BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (139 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_A4VHT5 N utilization substance protein B homolog n=23 T... 174 9e-43 UniRef50_A7ZIG9 N utilization substance protein B homolog n=118 ... 168 4e-41 UniRef50_Q48DC2 N utilization substance protein B homolog n=51 T... 165 3e-40 UniRef50_Q1IFL9 N utilization substance protein B homolog n=12 T... 165 4e-40 UniRef50_C5BS84 N utilization substance protein B homolog n=2 Ta... 163 2e-39 UniRef50_C9R7W0 NusB antitermination factor n=1 Tax=Ammonifex de... 159 2e-38 UniRef50_Q0AD60 N utilization substance protein B homolog n=3 Ta... 157 1e-37 UniRef50_A3DDP0 N utilization substance protein B homolog n=5 Ta... 156 2e-37 UniRef50_Q2YD50 N utilization substance protein B homolog n=4 Ta... 155 3e-37 UniRef50_A5D1B7 tRNA and rRNA cytosine-C5-methylases n=6 Tax=Clo... 155 4e-37 UniRef50_Q21F20 N utilization substance protein B homolog n=5 Ta... 155 5e-37 UniRef50_Q31FT2 N utilization substance protein B homolog n=1 Ta... 155 5e-37 UniRef50_A1W9I4 N utilization substance protein B homolog n=6 Ta... 155 6e-37 UniRef50_C7HWX1 NusB antitermination factor n=1 Tax=Thiomonas in... 154 7e-37 UniRef50_A7C6S2 Transcription antitermination protein NusB n=1 T... 154 7e-37 UniRef50_B6IZ82 N utilization substance protein B homolog n=6 Ta... 154 9e-37 UniRef50_C0GMV1 NusB antitermination factor n=1 Tax=Desulfonatro... 153 1e-36 UniRef50_Q493G9 N utilization substance protein B homolog n=3 Ta... 153 2e-36 UniRef50_A7VUU4 Putative uncharacterized protein n=1 Tax=Clostri... 152 3e-36 UniRef50_Q0K7T8 N utilization substance protein B homolog n=70 T... 152 3e-36 UniRef50_D1BMC4 Sun protein n=3 Tax=Veillonella RepID=D1BMC4_VEIPT 152 3e-36 UniRef50_D0L1W4 NusB antitermination factor n=1 Tax=Halothiobaci... 152 3e-36 UniRef50_B3U4H5 Transcription antitermination protein n=1 Tax=Ca... 152 4e-36 UniRef50_A5D319 N utilization substance protein B homolog n=3 Ta... 152 4e-36 UniRef50_Q3JCY0 N utilization substance protein B homolog n=2 Ta... 152 4e-36 UniRef50_B3DWQ3 N utilization substance protein B homolog n=1 Ta... 152 5e-36 UniRef50_A8FF16 N utilization substance protein B homolog n=28 T... 152 5e-36 UniRef50_A3DCX8 Sun protein n=5 Tax=Clostridium RepID=A3DCX8_CLOTH 152 5e-36 UniRef50_B0TEI6 N utilization substance protein B homolog n=1 Ta... 151 7e-36 UniRef50_A0L3Z8 NusB antitermination factor n=1 Tax=Magnetococcu... 151 7e-36 UniRef50_C0N8C8 Transcription antitermination factor NusB n=1 Ta... 150 9e-36 UniRef50_A9BVN7 N utilization substance protein B homolog n=7 Ta... 150 1e-35 UniRef50_B8FJ78 N utilization substance protein B homolog n=2 Ta... 150 1e-35 UniRef50_A8FD39 rRNA SAM-dependent methyltransferase RmsB n=3 Ta... 150 1e-35 UniRef50_B0UU23 N utilization substance protein B homolog n=33 T... 150 1e-35 UniRef50_Q479L3 N utilization substance protein B homolog n=3 Ta... 150 1e-35 UniRef50_Q67NA9 N utilization substance protein B homolog n=2 Ta... 150 2e-35 UniRef50_Q1PUX1 Putative uncharacterized protein n=1 Tax=Candida... 150 2e-35 UniRef50_C6X9V7 NusB antitermination factor n=1 Tax=Methylovorus... 150 2e-35 UniRef50_C6WU13 NusB antitermination factor n=1 Tax=Methylotener... 148 5e-35 UniRef50_Q2BM00 NusB protein n=1 Tax=Neptuniibacter caesariensis... 148 5e-35 UniRef50_B8D9P0 N utilization substance protein B homolog n=5 Ta... 148 5e-35 UniRef50_C5TIT6 Transcription antitermination factor NusB n=5 Ta... 148 6e-35 UniRef50_A8PLC7 Transcription antitermination factor NusB n=1 Ta... 148 7e-35 UniRef50_Q1N2N9 Transcription antitermination protein NusB n=1 T... 148 7e-35 UniRef50_B9L0C6 Transcription antitermination factor NusB n=2 Ta... 147 8e-35 UniRef50_B3QZ49 Sun protein n=1 Tax=Chloroherpeton thalassium AT... 147 9e-35 UniRef50_Q2RIA9 N utilization substance protein B homolog n=1 Ta... 147 9e-35 UniRef50_D2LH50 NusB antitermination factor n=1 Tax=Rhodomicrobi... 147 1e-34 UniRef50_B8FQ61 N utilization substance protein B homolog n=2 Ta... 147 1e-34 UniRef50_C4KD91 NusB antitermination factor n=1 Tax=Thauera sp. ... 147 1e-34 UniRef50_Q1D350 N utilization substance protein B homolog n=2 Ta... 147 1e-34 UniRef50_Q5X720 N utilization substance protein B homolog n=6 Ta... 147 1e-34 UniRef50_A5FQ51 N utilization substance protein B homolog n=5 Ta... 147 2e-34 UniRef50_C4ZEV6 Sun protein n=4 Tax=Clostridiales RepID=C4ZEV6_E... 146 2e-34 UniRef50_C8W0Z5 NusB antitermination factor n=1 Tax=Desulfotomac... 146 2e-34 UniRef50_A6W2L6 N utilization substance protein B homolog n=4 Ta... 146 2e-34 UniRef50_Q30YL1 N utilization substance protein B homolog n=5 Ta... 146 2e-34 UniRef50_Q1H424 N utilization substance protein B homolog n=2 Ta... 146 2e-34 UniRef50_C8WLN1 NusB antitermination factor n=2 Tax=Coriobacteri... 146 2e-34 UniRef50_B3QV72 N utilization substance protein B homolog n=1 Ta... 146 3e-34 UniRef50_D2RNU3 Sun protein n=3 Tax=Veillonellaceae RepID=D2RNU3... 145 4e-34 UniRef50_Q1ISD3 N utilization substance protein B homolog n=2 Ta... 145 4e-34 UniRef50_A5F5Z6 N utilization substance protein B homolog n=91 T... 145 4e-34 UniRef50_C7LSH4 NusB antitermination factor n=1 Tax=Desulfomicro... 145 4e-34 UniRef50_A8ZTU6 N utilization substance protein B homolog n=1 Ta... 145 5e-34 UniRef50_B5ELV9 NusB antitermination factor n=3 Tax=Acidithiobac... 145 6e-34 UniRef50_B0MGA0 Putative uncharacterized protein n=2 Tax=Clostri... 144 6e-34 UniRef50_C6D4F5 Sun protein n=87 Tax=Bacilli RepID=C6D4F5_PAESJ 144 6e-34 UniRef50_A6Q4Q9 N utilization substance protein B homolog n=20 T... 144 7e-34 UniRef50_Q3A4L2 N utilization substance protein B homolog n=2 Ta... 144 9e-34 UniRef50_A0Q099 N utilization substance protein B homolog n=3 Ta... 143 1e-33 UniRef50_UPI00006A2BCA UPI00006A2BCA related cluster n=1 Tax=Xen... 143 1e-33 UniRef50_A8MH88 Sun protein n=7 Tax=Clostridiaceae RepID=A8MH88_... 143 1e-33 UniRef50_B5JUN2 Transcription antitermination factor NusB n=1 Ta... 143 2e-33 UniRef50_C0GE32 NusB antitermination factor n=1 Tax=Dethiobacter... 143 2e-33 UniRef50_D1CCN3 NusB antitermination factor n=1 Tax=Thermobaculu... 143 2e-33 UniRef50_Q2RK22 Sun protein n=3 Tax=Clostridia RepID=Q2RK22_MOOTA 143 2e-33 UniRef50_D2L8L5 NusB antitermination factor n=1 Tax=Desulfovibri... 143 2e-33 UniRef50_Q3BXH9 N utilization substance protein B homolog n=20 T... 142 3e-33 UniRef50_C1DB31 N utilization substance protein B homolog n=3 Ta... 142 3e-33 UniRef50_B0S1M1 N utilization substance protein B homolog n=2 Ta... 142 3e-33 UniRef50_B0A9Y2 Putative uncharacterized protein n=2 Tax=Clostri... 142 3e-33 UniRef50_Q0AZF7 N utilization substance protein B homolog n=1 Ta... 142 3e-33 UniRef50_A0LI21 N utilization substance protein B homolog n=4 Ta... 142 3e-33 UniRef50_C4L3F7 N utilization substance protein B homolog n=2 Ta... 142 3e-33 UniRef50_B3EF03 Sun protein n=11 Tax=Chlorobiaceae RepID=B3EF03_... 142 4e-33 UniRef50_P94464 Ribosomal RNA small subunit methyltransferase B ... 142 4e-33 UniRef50_Q2LQK4 N utilization substance protein B homolog n=1 Ta... 142 5e-33 UniRef50_B1H071 Transcription antitermination factor NusB n=1 Ta... 141 7e-33 UniRef50_A6CAX2 Transcription antitermination protein NusB n=1 T... 140 9e-33 UniRef50_A9ET18 N utilization substance protein B homolog n=1 Ta... 140 1e-32 UniRef50_C5CI90 NusB antitermination factor n=1 Tax=Kosmotoga ol... 140 1e-32 UniRef50_C4FT85 Putative uncharacterized protein n=1 Tax=Catonel... 140 1e-32 UniRef50_A5G3J8 N utilization substance protein B homolog n=7 Ta... 140 2e-32 UniRef50_B1YIQ1 Sun protein n=2 Tax=Exiguobacterium RepID=B1YIQ1... 140 2e-32 UniRef50_UPI0001C42A93 transcription antitermination protein Nus... 140 2e-32 UniRef50_B2S4Q2 N utilization substance protein B homolog n=3 Ta... 140 2e-32 UniRef50_B1LAQ8 N utilization substance protein B homolog n=10 T... 140 2e-32 UniRef50_B4SCZ7 N utilization substance protein B homolog n=2 Ta... 140 2e-32 UniRef50_Q5WF59 N utilization substance protein B homolog n=2 Ta... 139 2e-32 UniRef50_UPI0001C36EDB sun protein n=1 Tax=Ruminococcus flavefac... 139 2e-32 UniRef50_C0EFK3 Putative uncharacterized protein n=1 Tax=Clostri... 139 3e-32 UniRef50_Q5F9Y0 N utilization substance protein B homolog n=22 T... 139 3e-32 UniRef50_D1VSJ6 Transcription antitermination factor NusB n=1 Ta... 139 3e-32 UniRef50_A6NUS8 Putative uncharacterized protein n=1 Tax=Bactero... 139 3e-32 UniRef50_Q136T4 N utilization substance protein B homolog n=36 T... 138 4e-32 UniRef50_UPI0001745093 NusB antitermination factor n=1 Tax=Verru... 138 4e-32 UniRef50_B1W456 N utilization substance protein B homolog n=7 Ta... 138 4e-32 UniRef50_B4D6X5 NusB antitermination factor n=1 Tax=Chthoniobact... 138 4e-32 UniRef50_A0Q113 Sun protein n=35 Tax=Clostridium RepID=A0Q113_CLONN 138 5e-32 UniRef50_C7N4M1 Transcription antitermination factor NusB n=1 Ta... 138 5e-32 UniRef50_C6CU26 NusB antitermination factor n=3 Tax=Bacillales R... 138 5e-32 UniRef50_Q6AP93 N utilization substance protein B homolog n=1 Ta... 138 6e-32 UniRef50_B8DJF1 N utilization substance protein B homolog n=2 Ta... 138 6e-32 UniRef50_B6WQ80 Putative uncharacterized protein n=1 Tax=Desulfo... 138 6e-32 UniRef50_C8PMR7 Transcription antitermination factor NusB n=1 Ta... 138 6e-32 UniRef50_B0K9D9 N utilization substance protein B homolog n=10 T... 138 7e-32 UniRef50_B1HQE5 Ribosomal RNA small subunit methyltransferase B ... 138 7e-32 UniRef50_B2KE32 N utilization substance protein B homolog n=1 Ta... 138 7e-32 UniRef50_A0LEK0 Sun protein n=1 Tax=Syntrophobacter fumaroxidans... 137 8e-32 UniRef50_C9RZP8 Sun protein n=5 Tax=Bacillales RepID=C9RZP8_GEOSY 137 9e-32 UniRef50_C5S6Y6 NusB antitermination factor n=1 Tax=Allochromati... 137 9e-32 UniRef50_Q5P3H4 N utilization substance protein B homolog n=9 Ta... 137 9e-32 UniRef50_C0WD86 SUN protein n=1 Tax=Acidaminococcus sp. D21 RepI... 137 1e-31 UniRef50_A7HDY2 N utilization substance protein B homolog n=4 Ta... 137 1e-31 UniRef50_Q3ATI5 N utilization substance protein B homolog n=9 Ta... 137 1e-31 UniRef50_B9L730 Transcription antitermination factor NusB n=2 Ta... 137 1e-31 UniRef50_Q6MNX9 N utilization substance protein B homolog n=1 Ta... 137 1e-31 UniRef50_P72943 Ribosomal RNA small subunit methyltransferase B ... 137 1e-31 UniRef50_B3QJK9 N utilization substance protein B homolog n=9 Ta... 136 2e-31 UniRef50_A1WVG0 N utilization substance protein B homolog n=1 Ta... 136 2e-31 UniRef50_B7IXH3 N utilization substance protein B homolog n=82 T... 136 2e-31 UniRef50_D1U9R7 NusB antitermination factor n=1 Tax=Desulfovibri... 136 2e-31 UniRef50_D0MK26 NusB antitermination factor n=1 Tax=Rhodothermus... 136 3e-31 UniRef50_B9M341 Sun protein n=4 Tax=Geobacter RepID=B9M341_GEOSF 135 3e-31 UniRef50_C5EIZ3 Putative uncharacterized protein n=2 Tax=Clostri... 135 3e-31 UniRef50_A8RWU3 Putative uncharacterized protein n=4 Tax=Clostri... 135 3e-31 UniRef50_C6PE58 NusB/RsmB/TIM44 protein n=1 Tax=Thermoanaerobact... 135 3e-31 UniRef50_D0BMY2 Ribosomal RNA small subunit methyltransferase B ... 135 3e-31 UniRef50_Q1NRI6 NusB antitermination factor n=1 Tax=delta proteo... 135 4e-31 UniRef50_C8WW78 Sun protein n=2 Tax=Alicyclobacillus acidocaldar... 135 4e-31 UniRef50_Q1MS16 N utilization substance protein B homolog n=1 Ta... 135 4e-31 UniRef50_C0ZC03 N utilization substance protein B n=1 Tax=Brevib... 135 4e-31 UniRef50_C4XHY8 N utilization substance protein B homolog n=1 Ta... 135 4e-31 UniRef50_Q2YYB7 N utilization substance protein B homolog n=59 T... 135 5e-31 UniRef50_A4TBX3 N utilization substance protein B homolog n=18 T... 135 6e-31 UniRef50_C6R1D5 Ribosomal RNA small subunit methyltransferase B ... 135 6e-31 UniRef50_UPI0001C335A0 ribosomal RNA small subunit methyltransfe... 135 6e-31 UniRef50_C4V0R0 rRNA SAM-dependent methyltransferase RmsB n=1 Ta... 134 7e-31 UniRef50_B8FHH2 Sun protein n=1 Tax=Desulfatibacillum alkenivora... 134 7e-31 UniRef50_C1QBG1 Transcription antitermination factor NusB n=1 Ta... 134 8e-31 UniRef50_Q03RR0 N utilization substance protein B homolog n=23 T... 134 9e-31 UniRef50_C9LLK5 Ribosomal RNA small subunit methyltransferase B ... 134 9e-31 UniRef50_B9LDT2 N utilization substance protein B homolog n=6 Ta... 134 1e-30 UniRef50_C6BYC6 NusB antitermination factor n=1 Tax=Desulfovibri... 134 1e-30 UniRef50_C0EY63 Putative uncharacterized protein n=1 Tax=Eubacte... 133 1e-30 UniRef50_B2A2K5 Sun protein n=1 Tax=Natranaerobius thermophilus ... 133 1e-30 UniRef50_C0W1K3 16S rRNA m(5)C 967 methyltransferase n=1 Tax=Act... 133 1e-30 UniRef50_A8ZUK3 Sun protein n=1 Tax=Desulfococcus oleovorans Hxd... 133 1e-30 UniRef50_Q0TPD3 N utilization substance protein B homolog n=10 T... 133 1e-30 UniRef50_B9XNZ3 NusB antitermination factor n=1 Tax=bacterium El... 133 1e-30 UniRef50_B8DTW1 N utilization substance protein B homolog n=16 T... 133 1e-30 UniRef50_B8ZUK7 N utilization substance protein B homolog n=16 T... 133 1e-30 UniRef50_B7DR17 NusB antitermination factor n=1 Tax=Alicyclobaci... 133 2e-30 UniRef50_D2NSI1 tRNA and rRNA cytosine-C5-methylase n=2 Tax=Micr... 133 2e-30 UniRef50_B3DQ30 N utilization substance protein B homolog n=7 Ta... 133 2e-30 UniRef50_A8VXB3 Acetyl-CoA carboxylase, biotin carboxyl carrier ... 133 2e-30 UniRef50_B2A534 N utilization substance protein B homolog n=1 Ta... 133 2e-30 UniRef50_C9L6W4 Ribosomal RNA small subunit methyltransferase B ... 133 2e-30 UniRef50_C0R001 Transcription antitermination protein NusB n=1 T... 132 3e-30 UniRef50_B8H535 N utilization substance protein B homolog n=4 Ta... 132 3e-30 UniRef50_Q1AW09 N utilization substance protein B homolog n=1 Ta... 132 3e-30 UniRef50_D2B6P7 Transcription antitermination factor NusB n=3 Ta... 132 3e-30 UniRef50_UPI00016C01E8 sun protein n=1 Tax=Epulopiscium sp. 'N.t... 132 4e-30 UniRef50_A9KM96 Sun protein n=1 Tax=Clostridium phytofermentans ... 132 4e-30 UniRef50_A0JX79 N utilization substance protein B homolog n=3 Ta... 132 4e-30 UniRef50_B6GCG9 Putative uncharacterized protein n=2 Tax=Collins... 132 4e-30 UniRef50_C9KK33 Transcription antitermination factor NusB n=1 Ta... 132 4e-30 UniRef50_UPI0000E87F00 transcription antitermination protein Nus... 132 4e-30 UniRef50_Q983A9 N utilization substance protein B homolog n=3 Ta... 132 4e-30 UniRef50_B8CWT0 Sun protein n=1 Tax=Halothermothrix orenii H 168... 132 5e-30 UniRef50_A4W3P3 Transcription termination factor n=6 Tax=Strepto... 131 6e-30 UniRef50_UPI00016C04B6 transcription termination factor n=1 Tax=... 131 7e-30 UniRef50_B9E6Q9 N utilization substance protein B homolog n=6 Ta... 131 7e-30 UniRef50_Q2S6K8 N utilization substance protein B homolog n=1 Ta... 131 8e-30 UniRef50_C4FTS3 Putative uncharacterized protein n=1 Tax=Catonel... 131 8e-30 UniRef50_C0GIQ4 Sun protein n=1 Tax=Dethiobacter alkaliphilus AH... 131 8e-30 UniRef50_A4XLC1 N utilization substance protein B homolog n=2 Ta... 131 9e-30 UniRef50_C8W9W3 NusB antitermination factor n=1 Tax=Atopobium pa... 131 9e-30 UniRef50_D2RJI2 NusB antitermination factor n=2 Tax=Acidaminococ... 131 9e-30 UniRef50_B0REX0 N utilization substance protein B homolog n=4 Ta... 131 9e-30 UniRef50_Q3AAM1 N utilization substance protein B homolog n=1 Ta... 130 1e-29 UniRef50_C8WXH1 NusB antitermination factor n=1 Tax=Alicyclobaci... 130 1e-29 UniRef50_C4V2M6 Transcription antitermination protein NusB n=1 T... 130 1e-29 UniRef50_B5YE05 N utilization substance protein B homolog n=2 Ta... 130 2e-29 UniRef50_A0LUG6 N utilization substance protein B homolog n=2 Ta... 130 2e-29 UniRef50_A8SLT0 Putative uncharacterized protein n=1 Tax=Parvimo... 130 2e-29 UniRef50_Q3A7Z0 Sun protein n=2 Tax=Desulfuromonadales RepID=Q3A... 130 2e-29 UniRef50_C2D814 Putative uncharacterized protein n=1 Tax=Atopobi... 129 2e-29 UniRef50_C4ZCZ0 N utilization substance protein B homolog n=5 Ta... 129 2e-29 UniRef50_D0LW51 NusB antitermination factor n=1 Tax=Haliangium o... 129 2e-29 UniRef50_C9RN69 NusB antitermination factor n=1 Tax=Fibrobacter ... 129 2e-29 UniRef50_UPI00016C38F9 Fmu, rRNA SAM-dependent methyltransferase... 129 3e-29 UniRef50_A5KNU7 Putative uncharacterized protein n=4 Tax=Clostri... 129 3e-29 UniRef50_Q2JK83 Ribosomal RNA small subunit methyltransferase B ... 129 3e-29 UniRef50_A7VX44 Putative uncharacterized protein n=1 Tax=Clostri... 129 3e-29 UniRef50_Q5FNA1 N utilization substance protein B homolog n=1 Ta... 128 4e-29 UniRef50_B7KB91 Sun protein n=19 Tax=Cyanobacteria RepID=B7KB91_... 128 4e-29 UniRef50_C7H0C2 Transcription antitermination factor NusB n=1 Ta... 128 5e-29 UniRef50_Q7USA9 N utilization substance protein B homolog n=2 Ta... 128 5e-29 UniRef50_A8LE23 Fmu (Sun) domain protein n=3 Tax=Frankia RepID=A... 128 5e-29 UniRef50_B2IXU2 Sun protein n=1 Tax=Nostoc punctiforme PCC 73102... 128 5e-29 UniRef50_Q4JVG6 N utilization substance protein B homolog n=5 Ta... 128 6e-29 UniRef50_A8MFJ3 N utilization substance protein B homolog n=2 Ta... 128 6e-29 UniRef50_C8WEQ4 NusB antitermination factor n=4 Tax=Zymomonas mo... 128 6e-29 UniRef50_B5GBK3 RNA-binding Sun protein n=1 Tax=Streptomyces sp.... 128 6e-29 UniRef50_B0MPP7 Putative uncharacterized protein n=1 Tax=Eubacte... 128 6e-29 UniRef50_B7APZ1 Putative uncharacterized protein n=1 Tax=Bactero... 128 6e-29 UniRef50_D1N6Z8 NusB antitermination factor n=1 Tax=Victivallis ... 128 7e-29 UniRef50_D1B3U2 Transcription antitermination factor NusB n=3 Ta... 128 7e-29 UniRef50_B0MQ18 Putative uncharacterized protein n=1 Tax=Eubacte... 128 7e-29 UniRef50_C9LUP3 Transcription antitermination factor NusB n=2 Ta... 128 7e-29 UniRef50_B0PBD5 Putative uncharacterized protein n=1 Tax=Anaerot... 128 7e-29 UniRef50_C3XMJ2 Transcription termination protein n=1 Tax=Helico... 128 7e-29 UniRef50_Q7A601 SA1060 protein n=63 Tax=Staphylococcaceae RepID=... 128 7e-29 UniRef50_UPI00019779AE transcription antitermination protein Nus... 128 7e-29 UniRef50_B4WR53 Ribosomal RNA small subunit methyltransferase B ... 127 8e-29 UniRef50_C7MCY2 tRNA/rRNA cytosine-C5-methylase n=2 Tax=Micrococ... 127 9e-29 UniRef50_A7HX88 NusB antitermination factor n=1 Tax=Parvibaculum... 127 9e-29 UniRef50_Q47QY5 N utilization substance protein B homolog n=21 T... 127 1e-28 UniRef50_D0WFZ4 Transcription antitermination factor NusB n=1 Ta... 126 1e-28 UniRef50_Q0AXL7 Putative uncharacterized protein n=1 Tax=Syntrop... 126 2e-28 UniRef50_Q836W8 N utilization substance protein B homolog n=39 T... 126 2e-28 UniRef50_C1I679 NusB antitermination factor n=1 Tax=Clostridium ... 126 2e-28 UniRef50_B0CL95 N utilization substance protein B homolog n=42 T... 126 2e-28 UniRef50_UPI0001BC34B4 sun protein n=1 Tax=Butyrivibrio crossotu... 126 2e-28 UniRef50_C5NYN0 Ribosomal RNA small subunit methyltransferase B ... 126 2e-28 UniRef50_B0NZC1 Putative uncharacterized protein n=2 Tax=Clostri... 126 2e-28 UniRef50_B0SB76 N utilization substance protein B homolog n=6 Ta... 126 2e-28 UniRef50_A6LU43 N utilization substance protein B homolog n=6 Ta... 126 2e-28 UniRef50_B0PFT6 Putative uncharacterized protein n=1 Tax=Anaerot... 126 3e-28 UniRef50_Q2LRX5 16S rRNA m(5)C 967 methyltransferase n=1 Tax=Syn... 126 3e-28 UniRef50_Q1IIS1 Sun protein n=1 Tax=Candidatus Koribacter versat... 126 3e-28 UniRef50_D0WMY6 Ribosomal RNA small subunit methyltransferase B ... 126 3e-28 UniRef50_Q0ABQ3 N utilization substance protein B homolog n=2 Ta... 126 3e-28 UniRef50_B1ZVQ6 NusB antitermination factor n=3 Tax=Verrucomicro... 126 3e-28 UniRef50_D2EIA0 Transcription antitermination factor NusB n=1 Ta... 125 3e-28 UniRef50_D1KDZ6 Transcription termination factor n=1 Tax=uncultu... 125 3e-28 UniRef50_UPI0001B583AE RNA-binding Sun protein n=2 Tax=Actinomyc... 125 4e-28 UniRef50_B5YHQ2 N utilization substance protein B homolog n=1 Ta... 125 4e-28 UniRef50_A3EVA3 Transcription antitermination factor (NusB) n=2 ... 125 4e-28 UniRef50_D2B6M0 Fmu, rRNA SAM-dependent methyltransferase:Nop2p ... 125 4e-28 UniRef50_Q0F2C5 Transcription antitermination protein NusB n=1 T... 125 5e-28 UniRef50_A5EVR1 Transcription antitermination factor NusB n=2 Ta... 125 6e-28 UniRef50_A8ST69 Putative uncharacterized protein n=2 Tax=Clostri... 125 6e-28 UniRef50_Q03FZ6 N utilization substance protein B homolog n=1 Ta... 125 6e-28 UniRef50_A6NUZ5 Putative uncharacterized protein n=1 Tax=Bactero... 125 6e-28 UniRef50_Q38XV0 N utilization substance protein B homolog n=9 Ta... 125 6e-28 UniRef50_A6DTV7 NusB antitermination factor n=1 Tax=Lentisphaera... 124 7e-28 UniRef50_A8SLL0 Putative uncharacterized protein n=1 Tax=Parvimo... 124 8e-28 UniRef50_C8PUW0 NusB antitermination factor n=1 Tax=Enhydrobacte... 124 8e-28 UniRef50_Q2W4S5 N utilization substance protein B homolog n=3 Ta... 124 8e-28 UniRef50_C5VC90 Transcription antitermination factor NusB n=2 Ta... 124 9e-28 UniRef50_D0LLT9 Sun protein n=1 Tax=Haliangium ochraceum DSM 143... 124 9e-28 UniRef50_B0KA07 Sun protein n=11 Tax=Thermoanaerobacterales RepI... 124 1e-27 UniRef50_C1ZLP1 Ribosomal RNA small subunit methyltransferase Rs... 124 1e-27 UniRef50_Q1JF82 N utilization substance protein B homolog n=57 T... 123 1e-27 UniRef50_Q6A8H8 N utilization substance protein B homolog n=2 Ta... 123 1e-27 UniRef50_A7BCC1 Putative uncharacterized protein n=1 Tax=Actinom... 123 1e-27 UniRef50_B0VJ63 N utilization substance protein B n=1 Tax=Candid... 123 1e-27 UniRef50_Q0APG4 N utilization substance protein B homolog n=3 Ta... 123 2e-27 UniRef50_C5CBJ2 Ribosomal RNA small subunit methyltransferase Rs... 123 2e-27 UniRef50_Q6NH08 N utilization substance protein B homolog n=1 Ta... 123 2e-27 UniRef50_B3WEW8 RRNA methylase (Putative) n=77 Tax=Bacilli RepID... 123 2e-27 UniRef50_D2R650 NusB antitermination factor n=2 Tax=Planctomycet... 123 2e-27 UniRef50_C8WZ45 NusB/RsmB/TIM44 n=1 Tax=Desulfohalobium retbaens... 123 2e-27 UniRef50_C2BWI2 Ribosomal RNA small subunit methyltransferase B ... 123 2e-27 UniRef50_B9CP02 Transcription antitermination factor NusB n=1 Ta... 123 2e-27 UniRef50_C6XHS5 Transcription antitermination protein NusB n=1 T... 122 3e-27 UniRef50_C4DFR3 Transcription antitermination factor NusB n=1 Ta... 122 3e-27 UniRef50_A5VKQ4 Sun protein n=14 Tax=Lactobacillus RepID=A5VKQ4_... 122 4e-27 UniRef50_Q8DSE9 N utilization substance protein B homolog n=5 Ta... 122 4e-27 UniRef50_C3RII4 SUN protein n=10 Tax=Bacteria RepID=C3RII4_9MOLU 122 4e-27 UniRef50_Q2J830 N utilization substance protein B homolog n=3 Ta... 122 4e-27 UniRef50_Q5HW85 N utilization substance protein B homolog n=24 T... 121 4e-27 UniRef50_D1PM68 Ribosomal RNA small subunit methyltransferase B ... 121 5e-27 UniRef50_C4G2S0 Putative uncharacterized protein n=1 Tax=Abiotro... 121 5e-27 UniRef50_A4XL79 Sun protein n=2 Tax=Clostridia RepID=A4XL79_CALS8 121 6e-27 UniRef50_Q022D6 NusB/RsmB/TIM44 n=1 Tax=Candidatus Solibacter us... 121 6e-27 UniRef50_C7Q4P0 Fmu (Sun) domain protein n=1 Tax=Catenulispora a... 121 6e-27 UniRef50_A5ZPE1 Putative uncharacterized protein n=4 Tax=Clostri... 121 8e-27 UniRef50_B8FS79 Sun protein n=2 Tax=Desulfitobacterium hafniense... 121 9e-27 UniRef50_A3UCC3 Transcription antitermination protein NusB n=1 T... 120 1e-26 UniRef50_B6IMS4 Transcription antitermination protein NusB, puta... 120 1e-26 UniRef50_C6QHP1 NusB antitermination factor n=1 Tax=Hyphomicrobi... 120 1e-26 UniRef50_Q0BTF1 N utilization substance protein B homolog n=11 T... 120 1e-26 UniRef50_C4DPH0 tRNA/rRNA cytosine-C5-methylase n=1 Tax=Stackebr... 120 1e-26 UniRef50_C5C681 N utilization substance protein B homolog n=14 T... 120 1e-26 UniRef50_A3TLN6 Putative RNA-binding Sun protein n=2 Tax=Actinob... 120 2e-26 UniRef50_A5CWS4 N utilization substance protein B n=2 Tax=sulfur... 120 2e-26 UniRef50_O66530 N utilization substance protein B homolog n=3 Ta... 119 2e-26 UniRef50_P71675 Putative methyltransferase Rv1407/MT1451 n=56 Ta... 119 3e-26 UniRef50_B9XT31 Sun protein n=1 Tax=bacterium Ellin514 RepID=B9X... 119 3e-26 UniRef50_B9E100 N utilization substance protein B homolog n=14 T... 119 3e-26 UniRef50_A9KMC2 N utilization substance protein B homolog n=17 T... 119 3e-26 UniRef50_C0VVW4 Transcription antitermination protein NusB n=2 T... 119 3e-26 UniRef50_C1XPK4 NusB antitermination factor n=2 Tax=Meiothermus ... 119 3e-26 UniRef50_Q6AS22 Related to SUN protein (FMU protein) n=1 Tax=Des... 119 3e-26 UniRef50_C5SLV1 NusB antitermination factor n=2 Tax=Caulobactera... 118 4e-26 UniRef50_B3ERI6 Putative uncharacterized protein n=1 Tax=Candida... 118 5e-26 UniRef50_Q1Q7P9 Putative uncharacterized protein n=1 Tax=Candida... 118 5e-26 UniRef50_UPI00016C434C transcription antitermination protein Nus... 118 5e-26 UniRef50_C6MTY9 Sun protein n=1 Tax=Geobacter sp. M18 RepID=C6MT... 118 6e-26 UniRef50_C1TMF2 Transcription antitermination factor NusB n=1 Ta... 118 8e-26 UniRef50_Q057F3 N utilization substance protein B homolog n=1 Ta... 118 8e-26 UniRef50_B1C650 Putative uncharacterized protein n=1 Tax=Anaerof... 118 8e-26 UniRef50_C9LLB0 Transcription antitermination factor NusB n=1 Ta... 118 8e-26 UniRef50_Q03FY2 tRNA and rRNA cytosine-C5-methylase n=2 Tax=Pedi... 117 8e-26 UniRef50_Q18B61 N utilization substance protein B homolog n=6 Ta... 117 9e-26 UniRef50_C1F543 Putative ribosomal RNA small subunit methyltrans... 117 1e-25 UniRef50_Q01T72 N utilization substance protein B homolog n=1 Ta... 117 1e-25 UniRef50_A8TL32 NusB antitermination factor n=1 Tax=alpha proteo... 117 1e-25 UniRef50_D1U6T4 NusB/RsmB/TIM44 n=1 Tax=Desulfovibrio aespoeensi... 117 1e-25 UniRef50_A4U1B3 Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p:Antite... 117 1e-25 UniRef50_C4XT41 rRNA (Cytosine-C(5)-)-methyltransferase n=1 Tax=... 117 1e-25 UniRef50_C5NYK7 Transcription antitermination factor NusB n=1 Ta... 116 1e-25 UniRef50_UPI0001BC2C1E Fmu (Sun) domain protein n=1 Tax=Brevibac... 116 1e-25 UniRef50_C0EFY5 Putative uncharacterized protein n=1 Tax=Clostri... 116 2e-25 UniRef50_B8D2G0 N utilization substance protein B homolog n=1 Ta... 116 2e-25 UniRef50_C5RKK7 NusB antitermination factor n=1 Tax=Clostridium ... 116 2e-25 UniRef50_C0W3L2 rRNA (Cytosine-C(5)-)-methyltransferase n=1 Tax=... 116 2e-25 UniRef50_A8I0J8 Antitermination protein n=1 Tax=Azorhizobium cau... 116 2e-25 UniRef50_C3XHP1 Predicted protein n=1 Tax=Helicobacter bilis ATC... 116 2e-25 UniRef50_B0MDS2 Putative uncharacterized protein n=1 Tax=Anaeros... 116 2e-25 UniRef50_A5WHT3 NusB antitermination factor n=1 Tax=Psychrobacte... 116 2e-25 UniRef50_Q2RTC4 N utilization substance protein B homolog n=1 Ta... 116 2e-25 UniRef50_Q317Q8 Sun protein n=1 Tax=Desulfovibrio desulfuricans ... 116 2e-25 UniRef50_A6BZY6 Sun protein n=1 Tax=Planctomyces maris DSM 8797 ... 116 3e-25 UniRef50_Q1NQ57 Fmu, rRNA SAM-dependent methyltransferase n=2 Ta... 116 3e-25 UniRef50_B1N082 Transcription termination factor n=3 Tax=Leucono... 115 4e-25 UniRef50_UPI0001C3796F transcription termination factor n=1 Tax=... 115 4e-25 UniRef50_C2BWJ7 Possible transcription antitermination protein N... 115 5e-25 UniRef50_C5RAE2 RNA methyltransferase n=3 Tax=Lactobacillales Re... 115 5e-25 UniRef50_UPI0000D5356A transcription termination factor (NusB) n... 115 6e-25 UniRef50_A8SZ12 Putative uncharacterized protein n=2 Tax=Clostri... 115 6e-25 UniRef50_A7NB00 Transcription antitermination factor n=19 Tax=Fr... 115 6e-25 UniRef50_Q3AC21 Sun protein n=1 Tax=Carboxydothermus hydrogenofo... 114 7e-25 UniRef50_Q03W17 tRNA and rRNA cytosine-C5-methylase n=11 Tax=Lac... 114 7e-25 UniRef50_C8R080 Sun protein n=1 Tax=Desulfurivibrio alkaliphilus... 114 8e-25 UniRef50_C8PI00 Transcription antitermination factor NusB n=1 Ta... 114 8e-25 UniRef50_Q1J0I4 N utilization substance protein B homolog n=3 Ta... 114 9e-25 UniRef50_Q72JL6 N utilization substance protein B homolog n=3 Ta... 114 1e-24 UniRef50_B1C5S4 Putative uncharacterized protein n=1 Tax=Anaerof... 114 1e-24 UniRef50_D0LCQ6 Transcription antitermination factor NusB n=3 Ta... 114 1e-24 UniRef50_C7H5H8 Ribosomal RNA small subunit methyltransferase B ... 114 1e-24 UniRef50_Q6A8H0 TRNA/rRNA cytosine-C5-methylase n=3 Tax=Propioni... 113 1e-24 UniRef50_A5GRG8 Ribosomal RNA small subunit methyltransferase B ... 113 2e-24 UniRef50_Q0SP57 N utilization substance protein B homolog n=43 T... 113 2e-24 UniRef50_UPI0001BC31DE NusB antitermination factor n=1 Tax=Butyr... 113 2e-24 UniRef50_C7H6X0 Transcription antitermination factor NusB n=3 Ta... 113 2e-24 UniRef50_B9K874 Sun protein n=6 Tax=Thermotogaceae RepID=B9K874_... 113 2e-24 UniRef50_C5R7W5 Transcription antitermination protein NusB n=1 T... 113 2e-24 UniRef50_C2GHU0 16S rRNA M(5)C 967 methyltransferase n=1 Tax=Cor... 113 2e-24 UniRef50_B6BUY9 Transcription antitermination factor NusB n=1 Ta... 113 2e-24 UniRef50_Q4FPZ1 N utilization substance protein B homolog n=19 T... 112 3e-24 UniRef50_D1BMJ1 NusB antitermination factor n=3 Tax=Veillonella ... 112 3e-24 UniRef50_Q8NQ33 N utilization substance protein B homolog n=5 Ta... 112 3e-24 UniRef50_Q1DCG5 Ribosomal RNA small subunit methyltransferase B ... 112 3e-24 UniRef50_B5YF43 Ribosomal RNA small subunit methyltransferase B ... 112 3e-24 UniRef50_UPI0001BC2C20 NusB antitermination factor n=1 Tax=Brevi... 111 5e-24 UniRef50_D0BJY7 Transcription antitermination factor NusB n=2 Ta... 111 7e-24 UniRef50_B0VHI6 Putative 16S rRNA m5C967 methyltransferase, S-ad... 111 7e-24 UniRef50_C0XM65 rRNA SAM-dependent methyltransferase RmsB n=3 Ta... 111 8e-24 UniRef50_C0W1L8 Putative uncharacterized protein n=1 Tax=Actinom... 111 8e-24 UniRef50_A8YVW1 rRNA methylase n=27 Tax=Lactobacillus RepID=A8YV... 111 9e-24 UniRef50_C5WIG1 16S rRNA m(5)C 967 methyltransferase n=44 Tax=St... 110 1e-23 UniRef50_C4GAK6 Putative uncharacterized protein n=1 Tax=Shuttle... 110 1e-23 UniRef50_B4CZF1 Sun protein n=1 Tax=Chthoniobacter flavus Ellin4... 110 1e-23 UniRef50_Q31J86 Ribosomal RNA small subunit methyltransferase B ... 110 1e-23 UniRef50_C6XIX5 NusB antitermination factor n=1 Tax=Hirschia bal... 110 1e-23 UniRef50_C6JJK8 N utilization substance protein B n=2 Tax=Fusoba... 110 2e-23 UniRef50_A7BC97 Putative uncharacterized protein n=1 Tax=Actinom... 110 2e-23 UniRef50_C1SH03 Transcription antitermination factor NusB n=1 Ta... 110 2e-23 UniRef50_D1B5H9 NusB antitermination factor n=1 Tax=Thermanaerov... 109 3e-23 UniRef50_A4E6J4 Putative uncharacterized protein n=1 Tax=Collins... 109 3e-23 UniRef50_D2QU07 NusB antitermination factor n=1 Tax=Spirosoma li... 108 4e-23 UniRef50_C6W6R3 NusB antitermination factor n=1 Tax=Dyadobacter ... 108 5e-23 UniRef50_A4CML6 NusB family protein n=2 Tax=Flavobacteria RepID=... 108 5e-23 UniRef50_C1A605 Putative rRNA methyltransferase n=1 Tax=Gemmatim... 108 5e-23 UniRef50_C4G0T0 Putative uncharacterized protein n=1 Tax=Abiotro... 108 6e-23 UniRef50_A8G3E0 Sun protein (Fmu protein) n=7 Tax=Prochlorococcu... 108 6e-23 UniRef50_C0VVY3 Possible rRNA SAM-dependent methyltransferase Rm... 108 8e-23 UniRef50_C2KZE7 Putative uncharacterized protein n=1 Tax=Oribact... 107 1e-22 UniRef50_D0MH27 Sun protein n=1 Tax=Rhodothermus marinus DSM 425... 107 1e-22 UniRef50_C7GZX3 16S rRNA M(5)C 967 methyltransferase n=1 Tax=Eub... 107 1e-22 UniRef50_C6I119 Transcription antitermination factor (NusB) n=1 ... 107 1e-22 UniRef50_D1VSE3 Ribosomal RNA small subunit methyltransferase B ... 107 1e-22 UniRef50_A1B2A9 NusB antitermination factor n=43 Tax=Rhodobacter... 107 1e-22 UniRef50_A1V9B6 NusB/RsmB/TIM44 n=3 Tax=Desulfovibrio vulgaris R... 107 1e-22 UniRef50_C7PI91 NusB antitermination factor n=1 Tax=Chitinophaga... 106 2e-22 UniRef50_D2L7S0 NusB/RsmB/TIM44 n=1 Tax=Desulfovibrio sp. FW1012... 106 2e-22 UniRef50_A8GMD2 N utilization substance protein B homolog n=15 T... 106 2e-22 UniRef50_Q607V0 N utilization substance protein B homolog n=1 Ta... 106 2e-22 UniRef50_C6BVK4 NusB/RsmB/TIM44 n=1 Tax=Desulfovibrio salexigens... 106 2e-22 UniRef50_C2KVE0 Possible rRNA (Cytosine-5-)-methyltransferase n=... 106 2e-22 UniRef50_A9BJY1 NusB antitermination factor n=1 Tax=Petrotoga mo... 106 2e-22 UniRef50_UPI0001BC6038 transcription antitermination protein Nus... 106 2e-22 UniRef50_C0QI57 RsmB n=1 Tax=Desulfobacterium autotrophicum HRM2... 106 2e-22 UniRef50_Q2WB24 tRNA and rRNA cytosine-C5-methylase n=3 Tax=Alph... 106 2e-22 UniRef50_C9L054 NusB family protein n=34 Tax=Bacteroidales RepID... 106 3e-22 UniRef50_UPI000174635C RsmB n=1 Tax=Verrucomicrobium spinosum DS... 106 3e-22 UniRef50_C2BPE4 Transcription antitermination protein NusB n=2 T... 106 3e-22 UniRef50_Q044I1 Transcription termination factor n=18 Tax=Lactob... 106 3e-22 UniRef50_B5FCW8 Ribosomal RNA small subunit methyltransferase B ... 106 3e-22 UniRef50_C0GN53 NusB/RsmB/TIM44 n=1 Tax=Desulfonatronospira thio... 105 3e-22 UniRef50_C7M0X2 NusB antitermination factor n=1 Tax=Acidimicrobi... 105 4e-22 UniRef50_C0QT45 N utilization substance protein B homolog n=2 Ta... 105 5e-22 UniRef50_Q9CHN4 N utilization substance protein B homolog n=1 Ta... 105 5e-22 UniRef50_C6XRR6 Fmu (Sun) domain protein n=1 Tax=Hirschia baltic... 105 5e-22 UniRef50_Q2SSR7 RRNA methyltransferase RsmB (Sun protein), putat... 105 6e-22 UniRef50_Q04EK8 Transcription termination factor n=2 Tax=Oenococ... 105 6e-22 UniRef50_C0WL14 Transcription antitermination protein NusB n=1 T... 105 6e-22 UniRef50_C3WQ58 16S rRNA m(5)C 967 methyltransferase n=15 Tax=Fu... 104 1e-21 UniRef50_B0JGZ3 N utilization substance protein B homolog n=12 T... 104 1e-21 UniRef50_C7RHU9 NusB antitermination factor n=2 Tax=Anaerococcus... 104 1e-21 UniRef50_C5PR17 N utilization substance protein n=2 Tax=Sphingob... 104 1e-21 UniRef50_Q1MPZ7 TRNA and rRNA cytosine-C5-methylases n=1 Tax=Law... 104 1e-21 UniRef50_D1R943 Putative uncharacterized protein n=1 Tax=Parachl... 104 1e-21 UniRef50_C8WHT5 NusB/RsmB/TIM44 n=1 Tax=Eggerthella lenta DSM 22... 103 1e-21 UniRef50_Q12TA7 Sun protein n=8 Tax=Gammaproteobacteria RepID=Q1... 103 2e-21 UniRef50_Q2SQX3 Sun protein n=1 Tax=Hahella chejuensis KCTC 2396... 103 2e-21 UniRef50_Q030T8 Transcription termination factor n=3 Tax=Lactoco... 103 2e-21 UniRef50_C3WZH3 Transcription antitermination protein NusB n=4 T... 103 2e-21 UniRef50_A9FBW8 Sun protein n=1 Tax=Sorangium cellulosum 'So ce ... 103 2e-21 UniRef50_A8RBL8 Putative uncharacterized protein n=2 Tax=unclass... 103 2e-21 UniRef50_C7LUK3 Sun protein n=1 Tax=Desulfomicrobium baculatum D... 103 3e-21 UniRef50_UPI0001699525 transcription antitermination protein Nus... 102 3e-21 UniRef50_P74395 N utilization substance protein B homolog n=16 T... 102 3e-21 UniRef50_A5EWM0 RRNA SAM-dependent methyltransferase, Fmu n=2 Ta... 102 4e-21 UniRef50_C9Q172 N utilization substance protein NusB n=9 Tax=Pre... 102 4e-21 UniRef50_A1ZKP0 NusB antitermination factor n=1 Tax=Microscilla ... 102 4e-21 UniRef50_Q8EKR0 Ribosomal RNA small subunit methyltransferase B ... 102 4e-21 UniRef50_C2KPZ2 Possible transcription antitermination protein N... 101 6e-21 UniRef50_C3J8Y9 NusB family protein n=2 Tax=Bacteria RepID=C3J8Y... 101 6e-21 UniRef50_A0M4D8 Antitermination protein NusB n=8 Tax=Bacteroidet... 101 6e-21 UniRef50_Q2G467 N utilization substance protein B homolog n=7 Ta... 101 6e-21 UniRef50_C0AZZ3 Putative uncharacterized protein n=1 Tax=Proteus... 101 7e-21 UniRef50_D0J9N1 Antitermination protein NusB n=2 Tax=Blattabacte... 100 1e-20 UniRef50_Q0C0J1 N utilization substance protein B homolog n=1 Ta... 100 1e-20 UniRef50_C2MAV6 NusB family protein n=1 Tax=Porphyromonas uenoni... 100 1e-20 UniRef50_A6EGS9 Putative N utilization substance protein n=1 Tax... 100 1e-20 UniRef50_C7MNL0 tRNA/rRNA cytosine-C5-methylase n=1 Tax=Cryptoba... 100 1e-20 UniRef50_D1R8R5 Putative uncharacterized protein n=1 Tax=Parachl... 100 1e-20 UniRef50_C0BGT7 Transcription antitermination factor NusB n=1 Ta... 100 2e-20 UniRef50_Q2RN41 tRNA and rRNA cytosine-C5-methylase n=1 Tax=Rhod... 100 2e-20 UniRef50_C1A8F7 Antitermination protein NusB n=1 Tax=Gemmatimona... 100 2e-20 UniRef50_Q2VBT2 NusB n=1 Tax=uncultured Bacteroidetes bacterium ... 100 2e-20 UniRef50_Q7NKZ0 N utilization substance protein B homolog n=1 Ta... 100 2e-20 UniRef50_B7S425 Predicted protein n=1 Tax=Phaeodactylum tricornu... 100 3e-20 UniRef50_UPI0001BC65B2 16S rRNA m(5)C 967 methyltransferase n=2 ... 99 3e-20 UniRef50_A8RCQ7 Putative uncharacterized protein n=1 Tax=Eubacte... 99 3e-20 UniRef50_B1A1G7 Putative N utilization substance protein (Fragme... 99 4e-20 UniRef50_B8J9P4 NusB/RsmB/TIM44 n=4 Tax=Anaeromyxobacter RepID=B... 98 7e-20 UniRef50_A6GX17 N utilization substance protein B homolog (NusBp... 98 8e-20 UniRef50_B2VK95 Ribosomal RNA small subunit methyltransferase B ... 98 8e-20 UniRef50_Q2JHC7 N utilization substance protein B homolog n=3 Ta... 98 9e-20 UniRef50_C3RL93 Predicted protein n=4 Tax=Bacteria RepID=C3RL93_... 98 9e-20 UniRef50_B5YIL4 Sun protein n=1 Tax=Thermodesulfovibrio yellowst... 98 9e-20 UniRef50_Q14PA1 Putative ribosomal rna small subunit methyltrans... 98 9e-20 UniRef50_B4U865 NusB antitermination factor n=1 Tax=Hydrogenobac... 98 1e-19 UniRef50_C2D8V4 Putative uncharacterized protein n=1 Tax=Atopobi... 97 1e-19 UniRef50_C9M539 Transcription antitermination factor NusB n=1 Ta... 97 1e-19 UniRef50_A3HY11 Putative N utilization substance protein n=1 Tax... 97 1e-19 UniRef50_C2CFC5 Possible transcription antitermination protein N... 97 1e-19 UniRef50_Q7MW39 NusB family protein n=2 Tax=Porphyromonas gingiv... 97 2e-19 UniRef50_C2M6F3 NusB family protein n=1 Tax=Capnocytophaga gingi... 97 2e-19 UniRef50_A5CEP9 N utilization substance protein B n=2 Tax=Orient... 97 2e-19 UniRef50_Q0BWV2 Putative ribosomal RNA small subunit methyltrans... 97 2e-19 UniRef50_Q2S463 Ribosomal RNA small subunit methyltransferase B ... 97 2e-19 UniRef50_B2UNF0 NusB antitermination factor n=1 Tax=Akkermansia ... 96 3e-19 UniRef50_B6FZ39 Putative uncharacterized protein n=1 Tax=Clostri... 96 3e-19 UniRef50_C7NCF2 NusB antitermination factor n=4 Tax=Fusobacteria... 96 4e-19 UniRef50_C7MCJ5 Transcription antitermination factor NusB n=1 Ta... 96 4e-19 UniRef50_C5CGV6 NusB/RsmB/TIM44 n=1 Tax=Kosmotoga olearia TBF 19... 95 5e-19 UniRef50_C0XST3 Transcription antitermination protein NusB n=1 T... 95 6e-19 UniRef50_A8YVX2 Transcription termination n=9 Tax=Lactobacillus ... 95 7e-19 UniRef50_C6WZZ6 Transcription termination protein NusB n=2 Tax=F... 95 7e-19 UniRef50_Q8RII1 N utilization substance protein B homolog n=7 Ta... 95 7e-19 UniRef50_B6GC41 Putative uncharacterized protein n=2 Tax=Collins... 95 8e-19 UniRef50_B0MX54 Putative uncharacterized protein n=1 Tax=Alistip... 94 1e-18 UniRef50_C8NU84 N utilization substance protein B family protein... 94 1e-18 UniRef50_Q2GKH0 N utilization substance protein B n=5 Tax=Anapla... 94 1e-18 UniRef50_UPI000185C78C antitermination protein NusB n=1 Tax=Capn... 94 1e-18 UniRef50_D1Y3T9 Transcription antitermination factor NusB n=1 Ta... 94 1e-18 UniRef50_A3VQU7 TRNA and rRNA cytosine-C5-methylase-like protein... 94 1e-18 UniRef50_Q6MAQ2 Putative transcription termination factor, nusB ... 94 2e-18 UniRef50_B4WQD6 Transcription antitermination factor NusB, putat... 93 2e-18 UniRef50_B7CB38 Putative uncharacterized protein n=1 Tax=Eubacte... 93 2e-18 UniRef50_Q26ET0 Putative antitermination protein NusB n=1 Tax=Fl... 93 2e-18 UniRef50_UPI0001C31BDA sun protein n=1 Tax=Conexibacter woesei D... 93 2e-18 UniRef50_C6XT54 NusB/RsmB/TIM44 n=1 Tax=Pedobacter heparinus DSM... 93 2e-18 UniRef50_B2VAC4 NusB antitermination factor n=2 Tax=Sulfurihydro... 93 3e-18 UniRef50_Q2BQD6 Fmu, rRNA SAM-dependent methyltransferase n=1 Ta... 93 3e-18 UniRef50_B9GFY0 Predicted protein n=6 Tax=Spermatophyta RepID=B9... 93 3e-18 UniRef50_A1AVP0 Sun protein n=1 Tax=Candidatus Ruthia magnifica ... 93 3e-18 UniRef50_A6LN58 NusB/RsmB/TIM44 n=2 Tax=Thermosipho RepID=A6LN58... 93 3e-18 UniRef50_Q5GT93 Transcription termination factor, NusB n=7 Tax=W... 92 4e-18 UniRef50_C8W755 NusB/RsmB/TIM44 n=1 Tax=Atopobium parvulum DSM 2... 92 4e-18 UniRef50_A6VR79 Sun protein n=2 Tax=Marinomonas RepID=A6VR79_MARMS 92 4e-18 UniRef50_A4BK87 Putative uncharacterized protein n=1 Tax=Reineke... 92 4e-18 UniRef50_Q3KKK7 N utilization substance protein B homolog n=9 Ta... 92 4e-18 UniRef50_Q2NQQ2 Ribosomal RNA small subunit methyltransferase B ... 92 5e-18 UniRef50_D2MQ58 Transcription antitermination factor NusB n=1 Ta... 92 5e-18 UniRef50_Q11SB2 Antitermination factor n=1 Tax=Cytophaga hutchin... 92 5e-18 UniRef50_UPI0001C31981 NusB antitermination factor n=1 Tax=Conex... 92 5e-18 UniRef50_C2HH21 Possible rRNA SAM-dependent methyltransferase Rm... 92 6e-18 UniRef50_C1DXN6 Transcription antitermination factor NusB n=1 Ta... 91 9e-18 UniRef50_A7IBA4 Sun protein n=6 Tax=Rhizobiales RepID=A7IBA4_XANP2 91 9e-18 UniRef50_C5X355 Putative uncharacterized protein Sb02g027560 n=1... 91 9e-18 UniRef50_B8DMM9 NusB/RsmB/TIM44 n=1 Tax=Desulfovibrio vulgaris s... 91 1e-17 UniRef50_C7RA09 Sun protein n=1 Tax=Kangiella koreensis DSM 1606... 91 1e-17 UniRef50_B5JST2 Ribosomal RNA small subunit methyltransferase B ... 91 1e-17 UniRef50_B8KLT3 Ribosomal RNA small subunit methyltransferase B ... 90 2e-17 UniRef50_B8J1H7 NusB/RsmB/TIM44 n=1 Tax=Desulfovibrio desulfuric... 90 3e-17 UniRef50_Q8DKS0 N utilization substance protein B homolog n=1 Ta... 90 3e-17 UniRef50_UPI0000E0DBE4 Putative Sun protein n=1 Tax=Rhodobactera... 90 3e-17 UniRef50_C9LEM4 NusB family protein n=1 Tax=Prevotella tannerae ... 89 4e-17 UniRef50_C8NZ84 rRNA methylase n=1 Tax=Erysipelothrix rhusiopath... 89 5e-17 UniRef50_C7N543 tRNA/rRNA cytosine-C5-methylase n=2 Tax=Slackia ... 88 6e-17 UniRef50_C9RK88 Fmu (Sun) domain protein n=1 Tax=Fibrobacter suc... 88 6e-17 UniRef50_A6G719 Putative uncharacterized protein n=1 Tax=Plesioc... 88 6e-17 UniRef50_Q9LK54 Similarity to SUN and FMU proteins n=3 Tax=Embry... 88 7e-17 UniRef50_Q21DD2 Fmu (Sun) n=13 Tax=Rhizobiales RepID=Q21DD2_RHOPB 88 8e-17 UniRef50_Q9Z6S0 N utilization substance protein B homolog n=5 Ta... 87 1e-16 UniRef50_B2UP28 Sun protein n=1 Tax=Akkermansia muciniphila ATCC... 87 1e-16 UniRef50_A1TWM9 Sun protein n=3 Tax=Marinobacter RepID=A1TWM9_MARAV 87 2e-16 UniRef50_D0WMZ9 B-like utilization substance protein n=1 Tax=Act... 87 2e-16 UniRef50_B6JAF7 SUN protein n=6 Tax=Alphaproteobacteria RepID=B6... 87 2e-16 UniRef50_D1AVZ4 NusB antitermination factor n=1 Tax=Streptobacil... 87 3e-16 UniRef50_Q651X9 Os09g0477900 protein n=3 Tax=Magnoliophyta RepID... 86 4e-16 UniRef50_A3MAA2 16S rRNA m5C967 SAM-dependent methyltransferase ... 86 4e-16 UniRef50_Q7V9D9 Antitermination protein NusB n=18 Tax=cellular o... 85 5e-16 UniRef50_C8NZM3 N utilization substance protein B family protein... 85 6e-16 UniRef50_D1KD39 Ribosomal RNA small subunit methyltransferase B ... 85 6e-16 UniRef50_Q2ST59 N utilization substance protein B (NusB), putati... 85 7e-16 UniRef50_D0RNV5 N utilization substance protein B n=1 Tax=alpha ... 85 8e-16 UniRef50_D2MQI4 Putative ribosomal RNA small subunit methyltrans... 84 1e-15 UniRef50_Q7V3R0 Antitermination protein NusB n=7 Tax=Prochloroco... 84 1e-15 UniRef50_A8PKU4 Ribosomal RNA small subunit methyltransferase B ... 84 1e-15 UniRef50_B9CK37 NusB/NOL1/NOP2/sun family protein n=1 Tax=Atopob... 84 1e-15 UniRef50_B3E3P1 Sun protein n=4 Tax=Desulfuromonadales RepID=B3E... 84 1e-15 UniRef50_Q0F395 Sun protein n=1 Tax=Mariprofundus ferrooxydans P... 84 1e-15 UniRef50_A5WI31 Fmu (Sun) domain protein n=3 Tax=Psychrobacter R... 83 2e-15 UniRef50_A1WZH2 Sun protein n=1 Tax=Halorhodospira halophila SL1... 83 2e-15 UniRef50_A4E6P2 Putative uncharacterized protein n=1 Tax=Collins... 82 4e-15 UniRef50_Q40J48 N utilization substance protein B, putative n=4 ... 82 4e-15 UniRef50_B9YCQ6 Putative uncharacterized protein n=1 Tax=Holdema... 82 5e-15 UniRef50_Q88B41 Ribosomal RNA small subunit methyltransferase B ... 82 7e-15 UniRef50_Q5SK01 Sun protein (RNA methyltransferase) n=4 Tax=Ther... 82 7e-15 UniRef50_B9ZKR1 Sun protein n=2 Tax=Chromatiales RepID=B9ZKR1_9GAMM 82 8e-15 UniRef50_A0Z2Z6 Sun protein n=2 Tax=unclassified Gammaproteobact... 82 8e-15 UniRef50_C0N5F9 Ribosomal RNA small subunit methyltransferase B ... 81 1e-14 UniRef50_Q0AKI8 Fmu (Sun) domain protein n=1 Tax=Maricaulis mari... 81 1e-14 UniRef50_A0LDW0 Sun protein n=2 Tax=cellular organisms RepID=A0L... 81 1e-14 UniRef50_Q0VTE3 tRNA and rRNA cytosine-C5-methylase, putative n=... 80 2e-14 UniRef50_Q46I53 Antitermination protein NusB n=2 Tax=Prochloroco... 80 2e-14 UniRef50_A6FYF2 Ribosomal RNA small subunit methyltransferase B ... 80 2e-14 UniRef50_A9IZD6 SUN-family protein n=5 Tax=Bartonella RepID=A9IZ... 80 2e-14 UniRef50_A6UED5 Fmu (Sun) domain protein n=14 Tax=Rhizobiales Re... 80 3e-14 UniRef50_B6YR78 Transcription termination factor NusB n=1 Tax=Ca... 80 3e-14 UniRef50_Q1IY91 rRNA methyltransferase, sun family protein n=3 T... 80 3e-14 UniRef50_B1AIT8 Transcription antitermination factor NusB n=15 T... 79 4e-14 UniRef50_Q0BRA0 16S rRNA m(5)C 967 methyltransferase n=12 Tax=Ac... 79 4e-14 UniRef50_B9Y7F7 Putative uncharacterized protein n=1 Tax=Holdema... 79 5e-14 UniRef50_C9UP93 Fmu domain-containing protein n=1 Tax=Brucella a... 78 7e-14 UniRef50_C6QJ47 Sun protein n=1 Tax=Hyphomicrobium denitrificans... 78 9e-14 UniRef50_D1AKD9 Fmu (Sun) domain protein n=4 Tax=Fusobacteriacea... 78 1e-13 UniRef50_Q1N3W2 16S rRNA m5C967 methyltransferase, S-adenosyl-L-... 77 2e-13 UniRef50_Q603G1 Sun protein n=1 Tax=Methylococcus capsulatus Rep... 77 2e-13 UniRef50_Q2GCQ0 Putative N utilization substance protein B n=2 T... 77 2e-13 UniRef50_B3PGY5 Ribosomal RNA small subunit methyltransferase B ... 77 2e-13 UniRef50_C8PZ41 Ribosomal RNA small subunit methyltransferase B ... 77 2e-13 UniRef50_B9QVY4 Ribosomal RNA small subunit methyltransferase B ... 76 4e-13 UniRef50_Q0FEH7 Ribosomal RNA small subunit methyltransferase B,... 75 6e-13 UniRef50_Q14MH2 Hypothetical transcription factor involved in an... 75 7e-13 UniRef50_D1RHX8 Ribosomal RNA small subunit methyltransferase B ... 75 9e-13 UniRef50_Q4FLU0 Antitermination protein NusB n=3 Tax=Candidatus ... 75 9e-13 UniRef50_A9NFG4 Transcription antitermination factor n=1 Tax=Ach... 74 1e-12 UniRef50_C1SIP0 tRNA/rRNA cytosine-C5-methylase n=1 Tax=Denitrov... 74 1e-12 UniRef50_Q87AR1 Ribosomal RNA small subunit methyltransferase B ... 74 1e-12 UniRef50_Q88RR3 Ribosomal RNA small subunit methyltransferase B ... 74 2e-12 UniRef50_A3UKE9 RRNA methyltransferase RsmB n=1 Tax=Oceanicaulis... 73 2e-12 UniRef50_Q0G330 Putative uncharacterized protein n=5 Tax=Rhizobi... 73 2e-12 UniRef50_C7RGU2 Fmu (Sun) domain protein n=4 Tax=Anaerococcus Re... 73 3e-12 UniRef50_Q601I2 Putative uncharacterized protein n=5 Tax=Mycopla... 72 4e-12 UniRef50_B8BTD6 Predicted protein n=1 Tax=Thalassiosira pseudona... 72 4e-12 UniRef50_Q5ZSC6 rRNA methyltransferase (SUN protein) n=5 Tax=Gam... 72 8e-12 UniRef50_O27960 Fmu and fmv protein n=1 Tax=Archaeoglobus fulgid... 72 8e-12 UniRef50_Q8EWP3 Transcription termination factor N-utilization s... 71 1e-11 UniRef50_B9JUI9 Sun protein n=44 Tax=Rhizobiales RepID=B9JUI9_AGRVS 71 1e-11 UniRef50_A5IYQ6 Transcription termination factor (NusB) n=2 Tax=... 71 1e-11 UniRef50_A1KRE7 SUN-family protein n=32 Tax=Neisseriaceae RepID=... 71 1e-11 UniRef50_C6P2V1 Sun protein n=1 Tax=Sideroxydans lithotrophicus ... 71 1e-11 UniRef50_Q8TGY0 tRNA/rRNA cytosine-C5-methylase n=1 Tax=Methanop... 70 2e-11 UniRef50_B6WUQ6 Putative uncharacterized protein n=1 Tax=Desulfo... 70 2e-11 UniRef50_D1J7Q8 N utilization substance protein B homolog(Protei... 70 2e-11 UniRef50_C5A6U4 SAM-dependent tRNA/rRNA cytosine-C5 methylase n=... 70 2e-11 UniRef50_C5J681 Putative uncharacterized protein MCJ_002820 n=1 ... 70 3e-11 UniRef50_C6XFI6 Fmu (Sun) domain protein n=1 Tax=Candidatus Libe... 69 4e-11 UniRef50_B2SFT3 tRNA and rRNA cytosine-C5-methylase, sun protein... 67 1e-10 UniRef50_Q16CE2 RRNA methyltransferase RsmB n=15 Tax=Rhodobacter... 67 2e-10 UniRef50_C5SHX2 Sun protein n=1 Tax=Asticcacaulis excentricus CB... 67 2e-10 UniRef50_B6W6K6 Putative uncharacterized protein n=1 Tax=Anaeroc... 66 3e-10 UniRef50_A4BP82 Fmu, rRNA SAM-dependent methyltransferase n=1 Ta... 66 4e-10 UniRef50_B7J3C2 Sun protein n=2 Tax=Acidithiobacillus ferrooxida... 66 5e-10 UniRef50_A5V7N4 Fmu (Sun) domain protein n=7 Tax=Sphingomonadale... 65 5e-10 UniRef50_Q3YSG7 Putative uncharacterized protein n=1 Tax=Ehrlich... 65 6e-10 UniRef50_B6BVG1 Sun protein n=1 Tax=beta proteobacterium KB13 Re... 64 1e-09 UniRef50_Q8TGZ4 tRNA/rRNA cytosine-C5-methylase n=1 Tax=Methanop... 64 1e-09 UniRef50_C5V0U6 Sun protein n=1 Tax=Gallionella ferruginea ES-2 ... 64 1e-09 UniRef50_Q7Y092 Os03g0656900 protein n=9 Tax=Poaceae RepID=Q7Y09... 64 2e-09 UniRef50_D2UG22 Putative trna and rrna cytosine-c5-methylase pro... 63 2e-09 UniRef50_P45679 Ribosomal RNA small subunit methyltransferase B ... 63 2e-09 UniRef50_B5Y8M6 Putative uncharacterized protein n=1 Tax=Coproth... 63 2e-09 UniRef50_Q4A684 Putative uncharacterized protein n=1 Tax=Mycopla... 63 4e-09 UniRef50_C1TRU2 tRNA/rRNA cytosine-C5-methylase n=1 Tax=Dethiosu... 62 6e-09 UniRef50_B3PM53 Transcription termination factor n=1 Tax=Mycopla... 62 7e-09 UniRef50_UPI0000E87C3C sun; rRNA methylase n=1 Tax=Methylophilal... 62 7e-09 UniRef50_D1N3Y9 Fmu (Sun) domain protein n=1 Tax=Victivallis vad... 62 7e-09 UniRef50_Q8TGY2 tRNA/rRNA cytosine-C5-methylase n=1 Tax=Methanop... 60 3e-08 UniRef50_C9M5B8 Putative Sun protein n=1 Tax=Jonquetella anthrop... 59 4e-08 UniRef50_D2RGI9 Fmu (Sun) domain protein n=2 Tax=Archaeoglobacea... 59 4e-08 UniRef50_Q9V089 Sun/NOL1/NOP nucleolar protein n=3 Tax=Pyrococcu... 59 5e-08 UniRef50_A1B5L0 Fmu (Sun) domain protein n=30 Tax=Alphaproteobac... 59 6e-08 UniRef50_D0GJC1 Putative ribosomal RNA small subunit methyltrans... 58 6e-08 UniRef50_Q2NJE9 N utilization substance protein B n=4 Tax=Candid... 58 9e-08 UniRef50_B4RCX9 rRNA methyltransferase RsmB n=8 Tax=Alphaproteob... 58 1e-07 UniRef50_C0B8Y2 Putative uncharacterized protein n=1 Tax=Coproco... 58 1e-07 UniRef50_D0KVS1 Sun protein n=1 Tax=Halothiobacillus neapolitanu... 58 1e-07 UniRef50_A9RW70 Predicted protein (Fragment) n=1 Tax=Physcomitre... 58 1e-07 UniRef50_C7I4U3 Sun protein n=1 Tax=Thiomonas intermedia K12 Rep... 56 3e-07 UniRef50_B1ZZX2 Fmu (Sun) domain protein n=2 Tax=Opitutaceae Rep... 55 6e-07 UniRef50_Q2YC21 Sun protein n=7 Tax=Betaproteobacteria RepID=Q2Y... 55 7e-07 UniRef50_D1H5W4 Whole genome shotgun sequence of line PN40024, s... 55 7e-07 UniRef50_B9GXX5 Predicted protein n=2 Tax=Spermatophyta RepID=B9... 53 3e-06 UniRef50_D1Y2M1 Fmu n=1 Tax=Pyramidobacter piscolens W5455 RepID... 53 3e-06 UniRef50_Q98R41 Putative uncharacterized protein MYPU_1690 n=1 T... 52 6e-06 UniRef50_C0ADS6 Fmu (Sun) domain protein (Fragment) n=1 Tax=Opit... 52 7e-06 UniRef50_D1B789 Fmu (Sun) domain protein n=1 Tax=Thermanaerovibr... 51 9e-06 UniRef50_UPI00003837A7 COG0144: tRNA and rRNA cytosine-C5-methyl... 50 3e-05 UniRef50_UPI000169938E Sun protein n=1 Tax=Endoriftia persephone... 48 1e-04 UniRef50_A6DSU1 tRNA and rRNA cytosine-C5-methylase n=1 Tax=Lent... 48 1e-04 UniRef50_C8WDB8 Fmu (Sun) domain protein n=3 Tax=Zymomonas mobil... 45 8e-04 UniRef50_Q8TGZ8 tRNA/rRNA cytosine-C5-methylase n=1 Tax=Methanop... 44 0.001 UniRef50_Q7NAX6 Putative uncharacterized protein n=1 Tax=Mycopla... 44 0.002 UniRef50_UPI000196CC25 hypothetical protein CATMIT_02482 n=1 Tax... 42 0.005 UniRef50_B6IQ69 tRNA and rRNA cytosine-C5-methylase, putative n=... 42 0.007 UniRef50_C5KW57 Putative uncharacterized protein (Fragment) n=3 ... 42 0.007 UniRef50_A5B766 Putative uncharacterized protein n=1 Tax=Vitis v... 42 0.007 UniRef50_A4T0M4 Sun protein n=2 Tax=Polynucleobacter necessarius... 41 0.010 UniRef50_Q8TGY3 tRNA/rRNA cytosine-C5-methylase n=1 Tax=Methanop... 40 0.029 UniRef50_D0ME27 Fmu (Sun) domain protein n=1 Tax=Rhodothermus ma... 39 0.038 UniRef50_Q5P4P8 tRNA and rRNA cytosine-C5-methylases sun n=8 Tax... 39 0.052 UniRef50_Q2T2A8 Sun protein n=76 Tax=Proteobacteria RepID=Q2T2A8... 38 0.067 >UniRef50_A4VHT5 N utilization substance protein B homolog n=23 Tax=Gammaproteobacteria RepID=NUSB_PSEU5 Length = 161 Score = 174 bits (442), Expect = 9e-43, Method: Composition-based stats. Identities = 71/137 (51%), Positives = 89/137 (64%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 K A RR AR A+QALY W ++ + ++E QF + D VD YF ELL GVA Sbjct: 19 KIATRRVARSLAMQALYQWHMAGQSLNEIEAQFRVDNDFSGVDGAYFHELLNGVARKKTE 78 Query: 62 LDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 +D + P L R L+EL VE A+LR++ YEL +R DVPY+V INE IELAK +GA D HK Sbjct: 79 VDQAIAPNLDRPLDELDPVELAILRLSTYELMQRIDVPYRVVINEGIELAKVYGATDGHK 138 Query: 122 FVNGVLDKAAPVIRPNK 138 FVNGVLDK AP +R + Sbjct: 139 FVNGVLDKLAPSLRSAE 155 >UniRef50_A7ZIG9 N utilization substance protein B homolog n=118 Tax=Gammaproteobacteria RepID=NUSB_ECO24 Length = 139 Score = 168 bits (428), Expect = 4e-41, Method: Composition-based stats. Identities = 139/139 (100%), Positives = 139/139 (100%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA Sbjct: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH Sbjct: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 Query: 121 KFVNGVLDKAAPVIRPNKK 139 KFVNGVLDKAAPVIRPNKK Sbjct: 121 KFVNGVLDKAAPVIRPNKK 139 >UniRef50_Q48DC2 N utilization substance protein B homolog n=51 Tax=Gammaproteobacteria RepID=NUSB_PSE14 Length = 165 Score = 165 bits (420), Expect = 3e-40, Method: Composition-based stats. Identities = 73/137 (53%), Positives = 93/137 (67%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 K A RR AR+ A QALY W ++ + + ++E QF + D +VD YFRELL GVATN Sbjct: 23 KSAKRREARQMATQALYQWHMAGHALNEIEAQFRVDNDFSNVDGAYFRELLHGVATNKTE 82 Query: 62 LDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 +D + P L +EEL VE AVLR++ +EL KR DVPY+V INE IELAK +G+ D HK Sbjct: 83 IDTALSPCLDLTIEELDPVELAVLRLSTFELLKRIDVPYRVVINEGIELAKVYGSTDGHK 142 Query: 122 FVNGVLDKAAPVIRPNK 138 FVNGVLDK AP +R + Sbjct: 143 FVNGVLDKLAPRLREVE 159 >UniRef50_Q1IFL9 N utilization substance protein B homolog n=12 Tax=Proteobacteria RepID=NUSB_PSEE4 Length = 166 Score = 165 bits (419), Expect = 4e-40, Method: Composition-based stats. Identities = 71/137 (51%), Positives = 91/137 (66%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 K A RR AR+ A QALY W ++++ + +VE QF + D DVD YFRE+L GV Sbjct: 24 KSAKRREARKLATQALYQWHMAKHSLNEVEAQFRVDNDFSDVDGAYFREILHGVPAKKVE 83 Query: 62 LDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 +D +KP L LEEL VE +VLR++ +E R+DVPY+V INE +ELAK FGA D HK Sbjct: 84 IDEALKPCLDTPLEELDPVELSVLRLSAWEFMMRADVPYRVVINEGVELAKVFGATDGHK 143 Query: 122 FVNGVLDKAAPVIRPNK 138 FVNGVLDK AP +R + Sbjct: 144 FVNGVLDKLAPRLREAE 160 >UniRef50_C5BS84 N utilization substance protein B homolog n=2 Tax=Gammaproteobacteria RepID=NUSB_TERTT Length = 147 Score = 163 bits (413), Expect = 2e-39, Method: Composition-based stats. Identities = 72/141 (51%), Positives = 90/141 (63%), Gaps = 3/141 (2%) Query: 1 MKP--AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATN 58 MK A R RAR A+QA+Y WQ++ N + +E +F + D+ VD YF EL GVA + Sbjct: 1 MKVTAATRSRARHFAMQAIYQWQMNGNPLHVIEAEFHTDNDMSKVDTEYFHELFHGVAAD 60 Query: 59 TAYLDGLMKPYLSR-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 + LD P+L LE+L V A+LR A +EL R DVPYKV INEA+ LAK FGAE Sbjct: 61 KSALDACFLPHLKSLPLEKLDPVTLALLRQATFELKNRVDVPYKVVINEAVNLAKKFGAE 120 Query: 118 DSHKFVNGVLDKAAPVIRPNK 138 DSHKFVNGVLDK A +R + Sbjct: 121 DSHKFVNGVLDKVAADLRALE 141 >UniRef50_C9R7W0 NusB antitermination factor n=1 Tax=Ammonifex degensii KC4 RepID=C9R7W0_AMMDK Length = 155 Score = 159 bits (404), Expect = 2e-38, Method: Composition-based stats. Identities = 48/132 (36%), Positives = 75/132 (56%), Gaps = 1/132 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +RRRARE A+ L+ + + + LAE + + + L+ G +D Sbjct: 1 MSRRRAREAALMVLFQVDVGGAVPEEALERTLAEWRLGNASREFATSLVLGTLAYRPQID 60 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 +++ R LE + +V++ V+R+ALYEL R D+P VAINEA+ELAK +G E+S +F Sbjct: 61 RVIEELSQRWRLERMNRVDRNVMRLALYELLFRQDIPPAVAINEAVELAKRYGGEESPRF 120 Query: 123 VNGVLDKAAPVI 134 VNG+L K A + Sbjct: 121 VNGILGKVAENL 132 >UniRef50_Q0AD60 N utilization substance protein B homolog n=3 Tax=Nitrosomonas RepID=NUSB_NITEC Length = 167 Score = 157 bits (397), Expect = 1e-37, Method: Composition-based stats. Identities = 54/136 (39%), Positives = 79/136 (58%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 RR +RE A+Q +Y W+L+ + +++ Q D YF +LL GV ++ L Sbjct: 20 KNRRRLSRELALQGIYQWRLAGGNAQEIDLQLQQVNFYSKADGSYFSDLLQGVLEHSRDL 79 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + ++ YL R L EL VE ++L I YE+ ++P + INEAIELAKS+G D HK+ Sbjct: 80 EAQIQAYLDRQLAELSPVECSILLIGTYEMVHHPEIPCRAIINEAIELAKSYGGTDGHKY 139 Query: 123 VNGVLDKAAPVIRPNK 138 VNGVLDK A +R + Sbjct: 140 VNGVLDKLAAQLRAVE 155 >UniRef50_A3DDP0 N utilization substance protein B homolog n=5 Tax=Clostridium RepID=NUSB_CLOTH Length = 145 Score = 156 bits (396), Expect = 2e-37, Method: Composition-based stats. Identities = 43/128 (33%), Positives = 77/128 (60%), Gaps = 1/128 (0%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 RR +RE A++ +Y ++ ++ + L + D+ + D Y +++ GV N +DG Sbjct: 3 RRASREIAMKLIYQLEIQKDSREEQINNTLEQYDLNENDREYILDVVKGVFKNQEEIDGT 62 Query: 66 MKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 ++ + L + +V+ A+LR+A+YE+ R D+P+ VAINEA+ELAK++ E+S F+N Sbjct: 63 IEKFSKGWKLSRISKVDLAILRLAIYEMCHRDDIPFTVAINEAVELAKNYSGEESGSFIN 122 Query: 125 GVLDKAAP 132 G+L K Sbjct: 123 GILGKVVK 130 >UniRef50_Q2YD50 N utilization substance protein B homolog n=4 Tax=Betaproteobacteria RepID=NUSB_NITMU Length = 158 Score = 155 bits (394), Expect = 3e-37, Method: Composition-based stats. Identities = 53/137 (38%), Positives = 77/137 (56%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 + + RR ARE A+Q LY W ++ +E Q ++ D YF LL GV Sbjct: 17 RKSRRRLARELALQGLYQWCVAGGSAGTIEAQLRDTEEFPKTDEEYFSRLLHGVLMQAPE 76 Query: 62 LDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 L+ ++P L R EL VE ++L + YEL + ++PY+ INEA+ELAK++G HK Sbjct: 77 LEKEIQPCLDRPFNELSPVEISILLLGAYELERHPEIPYRAVINEAVELAKAYGGTHGHK 136 Query: 122 FVNGVLDKAAPVIRPNK 138 +VNGVLDK A +R + Sbjct: 137 YVNGVLDKLAVKLRAAE 153 >UniRef50_A5D1B7 tRNA and rRNA cytosine-C5-methylases n=6 Tax=Clostridia RepID=A5D1B7_PELTS Length = 456 Score = 155 bits (393), Expect = 4e-37, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 57/128 (44%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 ARE A++ + + + Q L + +D + EL G + LD +++ Sbjct: 9 ARELALKVVNAVEEEGAYANLALNQVLEKHRPGKLDRAFATELAYGTLRSLNTLDWVLEQ 68 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 ++ + L + +LR+ +Y+L VP NE ELA+ +G + KFVNGVL Sbjct: 69 FIKQPLSSQSRTVLNILRLGVYQLMFMDRVPPSAVCNEGAELARKYGHAGTVKFVNGVLR 128 Query: 129 KAAPVIRP 136 + + Sbjct: 129 NISRRLNE 136 >UniRef50_Q21F20 N utilization substance protein B homolog n=5 Tax=Gammaproteobacteria RepID=NUSB_SACD2 Length = 150 Score = 155 bits (393), Expect = 5e-37, Method: Composition-based stats. Identities = 74/141 (52%), Positives = 94/141 (66%), Gaps = 3/141 (2%) Query: 1 MKPAA--RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATN 58 MK +A R RAR A+QALY W++S N + +E +F + D+ VDV YF E+L GVA Sbjct: 1 MKVSAAARGRARHFAMQALYQWEMSGNALHVIEAEFHTDNDMSKVDVEYFHEILHGVAAI 60 Query: 59 TAYLDGLMKPYLSR-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 + LD KP+L+ L+E+ V AVLR A YE KR DVPYKV INEA+ LAK FGA Sbjct: 61 KSTLDETFKPFLTGLRLDEIDPVSLAVLRQACYEFEKRVDVPYKVVINEAVNLAKKFGAA 120 Query: 118 DSHKFVNGVLDKAAPVIRPNK 138 DSHKF+NGVLDK A +R ++ Sbjct: 121 DSHKFINGVLDKVALRVRKDE 141 >UniRef50_Q31FT2 N utilization substance protein B homolog n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=NUSB_THICR Length = 161 Score = 155 bits (392), Expect = 5e-37, Method: Composition-based stats. Identities = 60/134 (44%), Positives = 91/134 (67%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R + R A+QALY WQ++ ++ D+ QF E + D DV F+E++ VA + A LD L Sbjct: 24 RTQTRRVALQALYQWQVNHSETVDIIKQFSEEGRLVDTDVALFQEIVNEVANHAADLDEL 83 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 P+L R + + VEK ++R+ ++EL + ++PY+V INE++ELAK FGAEDSHK++NG Sbjct: 84 YAPFLDRAVARIDPVEKNIMRMGVFELQNKLEIPYRVVINESVELAKRFGAEDSHKYING 143 Query: 126 VLDKAAPVIRPNKK 139 +LDKAA +R +K Sbjct: 144 ILDKAAEGLRSLEK 157 >UniRef50_A1W9I4 N utilization substance protein B homolog n=6 Tax=Comamonadaceae RepID=NUSB_ACISJ Length = 177 Score = 155 bits (392), Expect = 6e-37, Method: Composition-based stats. Identities = 55/136 (40%), Positives = 75/136 (55%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 + R RARE A+QALY + ND ++ D ++ LL G T Y+ Sbjct: 32 KSGRSRAREFALQALYQHLVGGNDATAIDVFTRDLSGFHKADAAHYDALLHGCITTAQYM 91 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 D L+ P L R + E+ +E AV+ I +YE DVP++V INE IELAK FG D HK+ Sbjct: 92 DELIAPQLDRKMSEISPIEHAVMWIGVYEFQHCQDVPWRVVINECIELAKEFGGTDGHKY 151 Query: 123 VNGVLDKAAPVIRPNK 138 VNGVL+ AP +R + Sbjct: 152 VNGVLNGLAPQLRATE 167 >UniRef50_C7HWX1 NusB antitermination factor n=1 Tax=Thiomonas intermedia K12 RepID=C7HWX1_THIIN Length = 202 Score = 154 bits (391), Expect = 7e-37, Method: Composition-based stats. Identities = 53/136 (38%), Positives = 79/136 (58%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 +ARR++RE A Q +Y W L+ +D +E +D +F+ LL G L Sbjct: 8 KSARRKSRELAFQGIYEWLLAGSDTGAIEAFLHERYPTIKLDDDHFQSLLHGALAEAGPL 67 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 D L++P++ R EL VE A+L + +EL + DVPY+V INEA+EL K +G D +K+ Sbjct: 68 DALIQPHIDRQTSELSPVEHALLLMGAFELQRHLDVPYRVVINEAVELGKVYGGTDGYKY 127 Query: 123 VNGVLDKAAPVIRPNK 138 VNGVLD+ A +R + Sbjct: 128 VNGVLDRIAAQLRKTE 143 >UniRef50_A7C6S2 Transcription antitermination protein NusB n=1 Tax=Beggiatoa sp. PS RepID=A7C6S2_9GAMM Length = 164 Score = 154 bits (391), Expect = 7e-37, Method: Composition-based stats. Identities = 67/141 (47%), Positives = 88/141 (62%), Gaps = 12/141 (8%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFL------------AEQDVKDVDVLYFRE 50 P AR ARE +QALY WQL+ + +E QFL E D++ D+ YF++ Sbjct: 10 PKARHVARERVLQALYQWQLTGQNTQLIESQFLDESTLSKEEDESEEPDMQKADIPYFKQ 69 Query: 51 LLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIEL 110 LL + T+ LD L P+L R + +L VE A+LRI YEL+ D+P+KV INEA+EL Sbjct: 70 LLHSIPEKTSDLDKLFAPFLDRKITQLDPVELAILRIGSYELTHCQDIPFKVVINEAVEL 129 Query: 111 AKSFGAEDSHKFVNGVLDKAA 131 AK FGAE SHK++NGVLDK A Sbjct: 130 AKQFGAEQSHKYINGVLDKLA 150 >UniRef50_B6IZ82 N utilization substance protein B homolog n=6 Tax=Coxiella burnetii RepID=NUSB_COXB2 Length = 138 Score = 154 bits (390), Expect = 9e-37, Method: Composition-based stats. Identities = 60/137 (43%), Positives = 82/137 (59%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 M R AR A+QALY W + + QF+ E D+ D DV YF+E++ G + A Sbjct: 1 MINKTRHNARRYALQALYQWFFCETKPDALISQFMEEHDLSDTDVAYFKEVVTGTIQHVA 60 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D LM +L R + L VE +VLR+++YEL R +VPYKV I+EA+EL K FGAE H Sbjct: 61 IIDELMTAHLDRKISALNPVELSVLRLSIYELLHRKEVPYKVVIDEALELVKEFGAEAGH 120 Query: 121 KFVNGVLDKAAPVIRPN 137 K+VN +LD + IR Sbjct: 121 KYVNAILDVLSSEIRKG 137 >UniRef50_C0GMV1 NusB antitermination factor n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GMV1_9DELT Length = 157 Score = 153 bits (389), Expect = 1e-36, Method: Composition-based stats. Identities = 52/140 (37%), Positives = 75/140 (53%), Gaps = 4/140 (2%) Query: 3 PAARRRARECAVQALYSW--QLSQNDIADVEYQFLAEQDVK-DVDVLYFRELLAGVATNT 59 +R RE A Q LYS + I D + F +QD D+ Y +L+ GV N Sbjct: 11 THSRHAQREFAFQVLYSLHFDQTGTHILDTFHHFKNDQDTAVQQDMSYALQLINGVRENL 70 Query: 60 AYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 LD + + ++ + VE ++R+A+YE+ R D+P KV INEAIELAK+FG + Sbjct: 71 EELDAAIGRHSQNWKVKRIAMVELTIMRLAVYEMIYREDIPVKVGINEAIELAKTFGDNN 130 Query: 119 SHKFVNGVLDKAAPVIRPNK 138 S FVNG+LD A +R + Sbjct: 131 SRNFVNGILDAVARDMRHGE 150 >UniRef50_Q493G9 N utilization substance protein B homolog n=3 Tax=Enterobacteriaceae RepID=NUSB_BLOPB Length = 144 Score = 153 bits (387), Expect = 2e-36, Method: Composition-based stats. Identities = 81/134 (60%), Positives = 104/134 (77%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK +RRRAREC +QALYSWQ+S+ND+ ++E + EQD++D ++ YF EL GV + Sbjct: 1 MKAISRRRARECTLQALYSWQVSKNDVKEIERYVVTEQDIQDCNISYFHELYIGVISCAE 60 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD LM P+LSR LE+LG +E +VLRIAL+EL+K +D+PYKVAINEAIEL K FGAE SH Sbjct: 61 ELDKLMIPHLSRNLEKLGYIEHSVLRIALFELTKCNDIPYKVAINEAIELVKIFGAEKSH 120 Query: 121 KFVNGVLDKAAPVI 134 KF+NGVLDK A + Sbjct: 121 KFINGVLDKIANQL 134 >UniRef50_A7VUU4 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VUU4_9CLOT Length = 446 Score = 152 bits (385), Expect = 3e-36, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 54/127 (42%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLM 66 + AR A++AL + + V LA + D + L GV LD + Sbjct: 5 KNARLTALKALLRVEEGKGYSNLVLDHGLAASGLDGRDAAFASALFYGVLERRITLDYQI 64 Query: 67 KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGV 126 Y L ++ + +LR+ Y+L VP A+NE+++L ++ + + FVNG+ Sbjct: 65 SRYSKMPLSQMAAPVREILRLGFYQLLYMDKVPQSAAVNESVKLTRAVKKDKASGFVNGI 124 Query: 127 LDKAAPV 133 L Sbjct: 125 LRSFIRD 131 >UniRef50_Q0K7T8 N utilization substance protein B homolog n=70 Tax=Betaproteobacteria RepID=NUSB_RALEH Length = 172 Score = 152 bits (385), Expect = 3e-36, Method: Composition-based stats. Identities = 60/136 (44%), Positives = 81/136 (59%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 +ARRR+RE A+Q LY W L++NDI ++ Q D +F LL G A L Sbjct: 32 KSARRRSRELALQGLYQWLLNRNDIGAIQAHLHDAQGFNKADREHFDALLNGAVREEARL 91 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 +P+L R +EEL VE+A L + YEL D+PYKV INEA+EL K+FG + +K+ Sbjct: 92 TAAFEPFLDRKVEELSPVERAALLVGSYELVHCLDIPYKVVINEAVELTKTFGGVEGYKY 151 Query: 123 VNGVLDKAAPVIRPNK 138 VNGVLDK A +R + Sbjct: 152 VNGVLDKLAAQVRAAE 167 >UniRef50_D1BMC4 Sun protein n=3 Tax=Veillonella RepID=D1BMC4_VEIPT Length = 451 Score = 152 bits (385), Expect = 3e-36, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 1/132 (0%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 K ++ R AV+AL + ++L + + D+D +F EL+ GV Y Sbjct: 5 KTNQQQNIRLLAVKALSEINRNGAYANIKLQEYLQKYHLSDLDRRFFTELVYGVIRRKNY 64 Query: 62 LDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 LD ++ + R +++L + +LR+ +Y++ VP A+NE+++LAK Sbjct: 65 LDAIIVFFAKRPIKKLSSMVLEILRLGIYQIIYMDKVPESAAVNESVKLAKKL-TRGLSG 123 Query: 122 FVNGVLDKAAPV 133 FVN VL Sbjct: 124 FVNAVLRSVLRE 135 >UniRef50_D0L1W4 NusB antitermination factor n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L1W4_HALNC Length = 196 Score = 152 bits (385), Expect = 3e-36, Method: Composition-based stats. Identities = 59/140 (42%), Positives = 89/140 (63%), Gaps = 3/140 (2%) Query: 2 KPAARRR---ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATN 58 KP+ ++R ARE AVQALY L+ + ++ QF+ + + VD+ FR ++ GV+ N Sbjct: 54 KPSPKKRWRWARERAVQALYQQILNHTPVDLLDAQFMEDAFMLKVDLELFRRIVRGVSAN 113 Query: 59 TAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 LD P L R L E+ +E+A+LR+ +EL ++P VAINEA+E+AK +GA + Sbjct: 114 EESLDEAYSPLLDRPLAEIDPIEQAILRLGAFELIHTPEIPRAVAINEAVEMAKLYGATE 173 Query: 119 SHKFVNGVLDKAAPVIRPNK 138 SHK++NGVLDK A +R N+ Sbjct: 174 SHKYINGVLDKLADRVRLNE 193 >UniRef50_B3U4H5 Transcription antitermination protein n=1 Tax=Candidatus Nitrospira defluvii RepID=B3U4H5_9BACT Length = 157 Score = 152 bits (385), Expect = 4e-36, Method: Composition-based stats. Identities = 49/138 (35%), Positives = 76/138 (55%), Gaps = 3/138 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 A+R +ARE AVQ L+ + + F + + + ++ L+AGV N LD Sbjct: 2 ASRHQARERAVQILFQYDIHGQ-AGPWLDDFWIQYPLAEELRVFAERLVAGVRANKKELD 60 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 L+ Y + + + +++ +LR+ +EL +VP KV +NEAIELAKSFG E++ KF Sbjct: 61 ALIGTYATNWKVSRMPIIDRNILRMGCFELLHVPEVPAKVTLNEAIELAKSFGDEEASKF 120 Query: 123 VNGVLDKAA-PVIRPNKK 139 VNG+LDK R +K Sbjct: 121 VNGILDKLLGSDARLERK 138 >UniRef50_A5D319 N utilization substance protein B homolog n=3 Tax=Peptococcaceae RepID=NUSB_PELTS Length = 144 Score = 152 bits (385), Expect = 4e-36, Method: Composition-based stats. Identities = 38/130 (29%), Positives = 68/130 (52%), Gaps = 1/130 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +RR+ARE A+Q L+ + D + + R L+ G N A +D Sbjct: 1 MSRRQARERALQILFQVDVGGADPGEAFRLMDEGFGELKKYQEFARLLVGGTLENLAAID 60 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ + + V++ ++R+ALYE+ D+PY V++NEA+EL K++G E+S +F Sbjct: 61 RVIAGVSKDWNINRMANVDRNIIRMALYEIFFCEDIPYSVSVNEAVELGKTYGGEESGRF 120 Query: 123 VNGVLDKAAP 132 +NG+L + Sbjct: 121 INGILGRIVE 130 >UniRef50_Q3JCY0 N utilization substance protein B homolog n=2 Tax=Nitrosococcus oceani RepID=NUSB_NITOC Length = 148 Score = 152 bits (384), Expect = 4e-36, Method: Composition-based stats. Identities = 60/135 (44%), Positives = 87/135 (64%), Gaps = 1/135 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 R +AR A+Q LY WQL D+ ++ +F+ + D++ +D YF+ELL GV LD Sbjct: 3 NRRSKARTAALQGLYQWQLMGQDVDKIDIEFIVQ-DIRGIDHAYFQELLRGVPQRQGELD 61 Query: 64 GLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 + P+L R + E+ VE A+LRI +EL R ++PY+V +NEAIELAK FGAE H++V Sbjct: 62 ECLGPFLDRPINEVDPVECAILRIGAFELLCRPEIPYRVVLNEAIELAKRFGAEHGHRYV 121 Query: 124 NGVLDKAAPVIRPNK 138 NG+LDK A +R + Sbjct: 122 NGILDKVAQKVRATE 136 >UniRef50_B3DWQ3 N utilization substance protein B homolog n=1 Tax=Methylacidiphilum infernorum V4 RepID=NUSB_METI4 Length = 143 Score = 152 bits (384), Expect = 5e-36, Method: Composition-based stats. Identities = 40/131 (30%), Positives = 70/131 (53%), Gaps = 2/131 (1%) Query: 5 ARRRARECAVQALYSWQLS-QNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +RR+ RE VQ LY W+++ + ++ F + D + L +A + ++ Sbjct: 3 SRRKIRELIVQFLYQWEMNKGVGLDNMLLDFWDFSPLDQKDKEAVEQWLKEIAEHKEAIE 62 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + Y+ L+ L V+K +L + +YE+ R D+P V+INE++E+AK + E+S KF Sbjct: 63 EKINSYVKNWSLDRLAPVDKCILILGIYEILYRKDIPPAVSINESVEIAKKYSTEESGKF 122 Query: 123 VNGVLDKAAPV 133 VNG+LD Sbjct: 123 VNGILDSVLKD 133 >UniRef50_A8FF16 N utilization substance protein B homolog n=28 Tax=Bacillales RepID=NUSB_BACP2 Length = 131 Score = 152 bits (384), Expect = 5e-36, Method: Composition-based stats. Identities = 50/136 (36%), Positives = 77/136 (56%), Gaps = 8/136 (5%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK RR ARE A+Q L+ +S D + L EQ+ +F EL+ GV Sbjct: 1 MK---RRTAREKALQTLFQIDVSNIDPKEAITHALDEQESDP----FFEELVFGVLEQKD 53 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 LD ++ +L L+ + V++A+LR+++YE+ + D+P V++NEAIELAK FG + + Sbjct: 54 KLDDMISQHLVNWKLDRIANVDRAILRLSVYEMVYQEDIPVSVSMNEAIELAKLFGDDKA 113 Query: 120 HKFVNGVLDKAAPVIR 135 KFVNGVL ++ Sbjct: 114 PKFVNGVLSNIKNDLK 129 >UniRef50_A3DCX8 Sun protein n=5 Tax=Clostridium RepID=A3DCX8_CLOTH Length = 455 Score = 152 bits (384), Expect = 5e-36, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 61/129 (47%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 + RE A++ LY ++L Q+ + +D + +++ G +D L++ Sbjct: 9 KVRETALKILYDINEKGAYSNISLNKYLNGQEFESIDRAFITDIVYGTLKWQYTIDYLIE 68 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 + S ++++ +LR+ +Y+L +P+ A NE+++LA +G S K+VN VL Sbjct: 69 KFSSVKIKKISPWIFNILRMGIYQLIYTDKIPFFAACNESVKLAAKYGHAASSKYVNAVL 128 Query: 128 DKAAPVIRP 136 A Sbjct: 129 RNIARNKEN 137 >UniRef50_B0TEI6 N utilization substance protein B homolog n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=NUSB_HELMI Length = 206 Score = 151 bits (382), Expect = 7e-36, Method: Composition-based stats. Identities = 46/136 (33%), Positives = 75/136 (55%), Gaps = 1/136 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +RR+ RE A+Q L+ + + + A E + + + REL+ G N +D Sbjct: 1 MSRRQGRETALQTLFMADVGRMEPAYALQYASEEFGISEAAAAFARELVEGAVANRETID 60 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 G ++ LE + V++ +LR+A++E+ R D+P AINEAIELAK + E+S KF Sbjct: 61 GNIRRLAKEWNLERMPHVDRNLLRVAIFEMLFREDIPLNAAINEAIELAKIYANEESAKF 120 Query: 123 VNGVLDKAAPVIRPNK 138 VNG+L + A +R + Sbjct: 121 VNGILGQLARELREAR 136 >UniRef50_A0L3Z8 NusB antitermination factor n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L3Z8_MAGSM Length = 165 Score = 151 bits (382), Expect = 7e-36, Method: Composition-based stats. Identities = 47/139 (33%), Positives = 79/139 (56%), Gaps = 1/139 (0%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 M+ R ++RE A+Q LY +++ + + L + + +D YF +L GV Sbjct: 15 MRRGGRSKSREIALQVLYGCEIAHDPVGPALRNMLEDPHSEGMDQDYFSQLTLGVEAERE 74 Query: 61 YLDGLMKPY-LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 LD + + ++ V+ +LR+ +YEL K+ +VP++V +NEAIEL+K FG E+S Sbjct: 75 VLDSWIGRAGAAWSMDRFSVVDHNILRLGIYELLKQPEVPHRVILNEAIELSKRFGGEES 134 Query: 120 HKFVNGVLDKAAPVIRPNK 138 +FVNGV+DK A ++R Sbjct: 135 SRFVNGVMDKVANLVREED 153 >UniRef50_C0N8C8 Transcription antitermination factor NusB n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N8C8_9GAMM Length = 150 Score = 150 bits (381), Expect = 9e-36, Method: Composition-based stats. Identities = 50/134 (37%), Positives = 75/134 (55%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 R +AR AVQALY ++ +F+ + +D YF L+ G +D Sbjct: 6 PRTKARRAAVQALYQALVNNETPQKAGLEFVTAEYADKIDRKYFTTLIEGTIKYQQAIDA 65 Query: 65 LMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + + R L + VE +VLR+A++E ++PY+V +NEA+ELAKSFG E HK+VN Sbjct: 66 ELSEAVDRDLNAVDPVEISVLRLAVFEFMHLPEIPYRVVLNEAVELAKSFGGEQGHKYVN 125 Query: 125 GVLDKAAPVIRPNK 138 GVLDK +RP++ Sbjct: 126 GVLDKMGARLRPHE 139 >UniRef50_A9BVN7 N utilization substance protein B homolog n=7 Tax=Comamonadaceae RepID=NUSB_DELAS Length = 212 Score = 150 bits (381), Expect = 1e-35, Method: Composition-based stats. Identities = 51/136 (37%), Positives = 74/136 (54%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 + R RARE A+QALY + ND+ ++ D +++ LL G + L Sbjct: 32 KSNRSRAREFALQALYQHLVGGNDVEAIDRFTRDLSGFHKADSVHYDALLRGCINSQVDL 91 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 D L+ P L R + E+ +E A + I +YE DVP++V +NE IELAK FG D HK+ Sbjct: 92 DALIAPKLDRTMAEISPIEHASMWIGVYEFQHCPDVPWRVVLNECIELAKEFGGTDGHKY 151 Query: 123 VNGVLDKAAPVIRPNK 138 VN VL+ AP +R + Sbjct: 152 VNAVLNGLAPTLRAAE 167 >UniRef50_B8FJ78 N utilization substance protein B homolog n=2 Tax=Desulfobacteraceae RepID=NUSB_DESAA Length = 143 Score = 150 bits (381), Expect = 1e-35, Method: Composition-based stats. Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 1/137 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 RRRARE A+Q+L+ + + F +F EL GV N +D Sbjct: 2 GKRRRARELALQSLFYVDSTSAPPLEALDLFCQNFPPPKDLAQFFYELAKGVINNQDEID 61 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 L++ + + L + V+ ++RIA YE DVP +V+INEAI++ K FG +S F Sbjct: 62 RLIEQHSNNWKLYRMSAVDLNLMRIAAYEFLFCPDVPRRVSINEAIDIGKRFGTAESGAF 121 Query: 123 VNGVLDKAAPVIRPNKK 139 +NG+LD + +K Sbjct: 122 INGILDSIHLHLGKEEK 138 >UniRef50_A8FD39 rRNA SAM-dependent methyltransferase RmsB n=3 Tax=Bacillaceae RepID=A8FD39_BACP2 Length = 447 Score = 150 bits (381), Expect = 1e-35, Method: Composition-based stats. Identities = 36/133 (27%), Positives = 64/133 (48%), Gaps = 4/133 (3%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK + RE A+ AL + +Q + + ++D+ D D EL+ G N Sbjct: 1 MKKSN---VREVALDALIKLEQNQAYSNLLLQSVMKDKDLADQDKPLLTELVYGTLQNKL 57 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD ++ P++ + +++ +LR++LY++ +P + AI+EA+EL K G + Sbjct: 58 ALDYMLAPFVKKP-QKVAPWVMQLLRMSLYQMVYLEKIPDRAAIHEAVELTKKRGHKGIS 116 Query: 121 KFVNGVLDKAAPV 133 VNGVL Sbjct: 117 SLVNGVLRSVQRE 129 >UniRef50_B0UU23 N utilization substance protein B homolog n=33 Tax=Gammaproteobacteria RepID=NUSB_HAES2 Length = 144 Score = 150 bits (380), Expect = 1e-35, Method: Composition-based stats. Identities = 71/135 (52%), Positives = 93/135 (68%), Gaps = 2/135 (1%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFL--AEQDVKDVDVLYFRELLAGVATNT 59 K + RRRARECAVQ LYSW +S+N ++E F+ + ++K VD+ YFR+L + Sbjct: 7 KISPRRRARECAVQNLYSWAISKNSPEEIELNFIVDQDNEMKGVDMPYFRKLFHQTINHV 66 Query: 60 AYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D M PYL R EL +E A+LR+A+YEL DVPYKV INEAIE+AK FGAE+S Sbjct: 67 ETIDSTMAPYLDRDNVELDPIECAILRLAVYELKFELDVPYKVVINEAIEVAKVFGAEES 126 Query: 120 HKFVNGVLDKAAPVI 134 HK++NGVLDK AP + Sbjct: 127 HKYINGVLDKIAPAL 141 >UniRef50_Q479L3 N utilization substance protein B homolog n=3 Tax=Betaproteobacteria RepID=NUSB_DECAR Length = 163 Score = 150 bits (380), Expect = 1e-35, Method: Composition-based stats. Identities = 53/136 (38%), Positives = 77/136 (56%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 +ARRRARE +Q LY W++ D A +E + D +F L GV + L Sbjct: 19 KSARRRAREFVLQGLYQWRVGGADEASIEAYAPEMEGFAKADREFFVGTLRGVISQQEKL 78 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + ++ R EL VE +L + +E+ ++ PY+V INEAIEL K+FG D HK+ Sbjct: 79 IEQVSTHIDRPFNELSPVEACILMLGSFEMLNHAETPYRVIINEAIELTKAFGGTDGHKY 138 Query: 123 VNGVLDKAAPVIRPNK 138 VNGVLDK A ++RP++ Sbjct: 139 VNGVLDKVAAILRPDE 154 >UniRef50_Q67NA9 N utilization substance protein B homolog n=2 Tax=Clostridiales RepID=NUSB_SYMTH Length = 153 Score = 150 bits (379), Expect = 2e-35, Method: Composition-based stats. Identities = 45/141 (31%), Positives = 74/141 (52%), Gaps = 9/141 (6%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQ--------DVKDVDVLYFRELLAGV 55 +RR+ARE A+QAL+ ++ D Q L + +++ + R L+ G Sbjct: 1 MSRRKARELALQALFQMDIAGTDPDTAVAQALTRETEPDWAPDRLEEESAEFARRLVRGA 60 Query: 56 ATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 + D L+ Y +E + V++A+LR+A+YE+ DVP VA+ EA+ELAK+F Sbjct: 61 WQHREESDRLIAQYARGWRVERMAAVDRAILRMAVYEIVHSEDVPDSVAVAEAVELAKTF 120 Query: 115 GAEDSHKFVNGVLDKAAPVIR 135 DS +FVNG+L ++ Sbjct: 121 STADSSRFVNGILGSVIRGMK 141 >UniRef50_Q1PUX1 Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PUX1_9BACT Length = 422 Score = 150 bits (379), Expect = 2e-35, Method: Composition-based stats. Identities = 48/140 (34%), Positives = 73/140 (52%), Gaps = 3/140 (2%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 M+ R ARE A++ALY L + +F + K + L+ G ++ Sbjct: 1 MR--NRTIARELAIKALYQLDLLGDKAETEIDEFCRQNAEKPDIYKFALLLVTGCRSHVK 58 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D + L + ++K +LR+ +YEL R D+P KV+INEAIELAK FG +DS Sbjct: 59 EIDERISLSAENWDLHRMAVIDKNILRLGVYELLYRDDIPPKVSINEAIELAKKFGDKDS 118 Query: 120 HKFVNGVLDKAAPVIRPNKK 139 FVNG+LDK ++ K+ Sbjct: 119 GMFVNGILDKVYNWLKNGKQ 138 >UniRef50_C6X9V7 NusB antitermination factor n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6X9V7_METSD Length = 158 Score = 150 bits (379), Expect = 2e-35, Method: Composition-based stats. Identities = 51/134 (38%), Positives = 77/134 (57%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 RR++RE A++ +Y ++Q D + + E + D Y R+LL GV LD Sbjct: 19 NRRKSRELALKGIYRNLMNQADFRAILRELADEPEFDKADQEYLRKLLDGVLAEREELDR 78 Query: 65 LMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + ++ R ++EL +E +L ++ YEL +PY+VAINE +ELAK +G D HK+VN Sbjct: 79 RIAVFVDRPMQELSPIEHGILCLSAYELIFDLSIPYRVAINEGVELAKIYGGTDGHKYVN 138 Query: 125 GVLDKAAPVIRPNK 138 GVLDK A RP + Sbjct: 139 GVLDKLAAEARPGE 152 >UniRef50_C6WU13 NusB antitermination factor n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WU13_METML Length = 178 Score = 148 bits (375), Expect = 5e-35, Method: Composition-based stats. Identities = 55/134 (41%), Positives = 79/134 (58%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 RR++RE ++A+Y L+ ++++ V + D D YF+ LL V N +DG Sbjct: 39 NRRKSRELVLKAVYRGMLNDSELSQVFRDMRDDPDYNKADEAYFKHLLQAVTENLTAIDG 98 Query: 65 LMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + ++ R LEEL VE A+LRIA EL +PY+V INE +ELAK FG D HK++N Sbjct: 99 KIVGFIDRTLEELSPVEHAILRIAGCELMFDLSIPYRVVINEGVELAKVFGGTDGHKYIN 158 Query: 125 GVLDKAAPVIRPNK 138 GVLDK A +R + Sbjct: 159 GVLDKFAADVRAAE 172 >UniRef50_Q2BM00 NusB protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BM00_9GAMM Length = 159 Score = 148 bits (375), Expect = 5e-35, Method: Composition-based stats. Identities = 69/136 (50%), Positives = 92/136 (67%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 RR AR A+QALYSW L+ + ++E QF + D++D D+ F ELL +A + L Sbjct: 17 TTQRRNARSYALQALYSWTLAGQPLNELEAQFRVDNDMRDTDIRLFSELLHSIAGGKSEL 76 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 D L +L R ++EL +E VLRI YELSKR +VPY+VAINE++ELAK+FGA DSHK+ Sbjct: 77 DQLYTDFLDRNVDELDPIELNVLRIGAYELSKRFEVPYRVAINESVELAKTFGATDSHKY 136 Query: 123 VNGVLDKAAPVIRPNK 138 VNGVLDK A +R + Sbjct: 137 VNGVLDKLAQRVRMAE 152 >UniRef50_B8D9P0 N utilization substance protein B homolog n=5 Tax=Buchnera aphidicola RepID=NUSB_BUCA5 Length = 143 Score = 148 bits (375), Expect = 5e-35, Method: Composition-based stats. Identities = 80/139 (57%), Positives = 108/139 (77%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MKP+ RR+AR CA+Q LYSW++S N+I + FL E++ K++D++YF EL+ G+ + Sbjct: 1 MKPSFRRKARACALQVLYSWEISHNNIKESAIYFLKEKNKKNIDIVYFYELIIGITYDCK 60 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D LMKPYL R L+ELG +E+A+LRI+ YEL KR+D+PYKV+INE IELAK FG+EDSH Sbjct: 61 NIDNLMKPYLFRSLKELGHIERAILRISFYELHKRNDIPYKVSINEGIELAKLFGSEDSH 120 Query: 121 KFVNGVLDKAAPVIRPNKK 139 KF+NGVLDKA + NKK Sbjct: 121 KFINGVLDKAVFKMGYNKK 139 >UniRef50_C5TIT6 Transcription antitermination factor NusB n=5 Tax=Neisseriaceae RepID=C5TIT6_NEIFL Length = 142 Score = 148 bits (374), Expect = 6e-35, Method: Composition-based stats. Identities = 55/138 (39%), Positives = 80/138 (57%), Gaps = 1/138 (0%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK + RRRARE AVQA+Y +++ ++ ++D F +L G T+ Sbjct: 1 MK-SPRRRARELAVQAIYQAGINKTAAPEIAKNIHELSQTSNMDEELFNKLFFGTQTHAE 59 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 + P L R ++L +E+AVL +A +ELS + PY V INEAIE+ K+FG D H Sbjct: 60 EYMEKISPLLDRDEKDLSPIERAVLLVACHELSTMPETPYPVIINEAIEVTKTFGGTDGH 119 Query: 121 KFVNGVLDKAAPVIRPNK 138 KFVNG+LD+ A IRP++ Sbjct: 120 KFVNGILDQLASRIRPDE 137 >UniRef50_A8PLC7 Transcription antitermination factor NusB n=1 Tax=Rickettsiella grylli RepID=A8PLC7_9COXI Length = 148 Score = 148 bits (374), Expect = 7e-35, Method: Composition-based stats. Identities = 60/132 (45%), Positives = 90/132 (68%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 A++RAR AVQA+Y WQL+Q + ++ +FLA++++K VD YF ++ G+ + LD Sbjct: 12 AKQRARRFAVQAIYQWQLTQETFSVIQTKFLAQEEMKSVDTAYFTLIVQGILNDHELLDR 71 Query: 65 LMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 ++ ++ R L +L VE A+LR+ YEL S++PYKV +NEAIELAK FGA DS+K+VN Sbjct: 72 YLQSFVDRPLCQLDCVEWAILRLGTYELLNCSEIPYKVILNEAIELAKMFGATDSYKYVN 131 Query: 125 GVLDKAAPVIRP 136 G+L + A R Sbjct: 132 GILHRIAEKNRA 143 >UniRef50_Q1N2N9 Transcription antitermination protein NusB n=1 Tax=Bermanella marisrubri RepID=Q1N2N9_9GAMM Length = 128 Score = 148 bits (374), Expect = 7e-35, Method: Composition-based stats. Identities = 59/125 (47%), Positives = 85/125 (68%) Query: 14 VQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL 73 +QALY W L+ ++++E +FL + D+ VD YFR++L GV LD + P LSR Sbjct: 1 MQALYQWDLAGASLSNIEAEFLTDNDMSKVDTEYFRDILRGVPRELDDLDEKLAPCLSRN 60 Query: 74 LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPV 133 ++E+ VE+A+LR+ YEL R DVPY+V INE++EL+K FGA +SHKF+NG LDK A Sbjct: 61 MQEVTPVERAILRLGAYELLHRIDVPYRVVINESVELSKKFGANESHKFINGALDKLAQA 120 Query: 134 IRPNK 138 +R + Sbjct: 121 VRVVE 125 >UniRef50_B9L0C6 Transcription antitermination factor NusB n=2 Tax=Thermomicrobia (class) RepID=B9L0C6_THERP Length = 168 Score = 147 bits (373), Expect = 8e-35, Method: Composition-based stats. Identities = 45/134 (33%), Positives = 74/134 (55%), Gaps = 1/134 (0%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 RR+AR A+Q LY ++ + + +V + ++ + Y L+ GV + +D + Sbjct: 34 RRQARILALQILYEVDVANHSLEEVLERHRSQASIAQPVRRYAERLVTGVWADRERIDRM 93 Query: 66 MKPYLSR-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + +++L V++ +LRIA+YEL DVP K AINEA+E+AK +G E S +FVN Sbjct: 94 IAEAAPAFPVDQLPPVDRNILRIAIYELLHEPDVPLKAAINEAVEIAKQYGGESSSRFVN 153 Query: 125 GVLDKAAPVIRPNK 138 GVL A + + Sbjct: 154 GVLGTIAANLASSG 167 >UniRef50_B3QZ49 Sun protein n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QZ49_CHLT3 Length = 443 Score = 147 bits (373), Expect = 9e-35, Method: Composition-based stats. Identities = 35/129 (27%), Positives = 61/129 (47%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 +ARE AVQAL +++ F + ++ VD + +++ G +D ++K Sbjct: 3 KAREIAVQALREVEVNHAKSDTALNHFFSITALEPVDRAFTMQIVYGTLREKMKIDHVIK 62 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 + +++ K +LRI Y+L S VP A+NE++ELAK + VNGVL Sbjct: 63 QFYRHDYDKMDIDVKNILRIGAYQLLFLSKVPRWAAVNESVELAKKLKGQFLGNLVNGVL 122 Query: 128 DKAAPVIRP 136 + + Sbjct: 123 RNISNNLES 131 >UniRef50_Q2RIA9 N utilization substance protein B homolog n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=NUSB_MOOTA Length = 145 Score = 147 bits (373), Expect = 9e-35, Method: Composition-based stats. Identities = 47/135 (34%), Positives = 76/135 (56%), Gaps = 1/135 (0%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 RR AR A+QAL++ + Q L E ++ + + REL+ G +D + Sbjct: 3 RRAARAKALQALFAIDVGGTSPDMALEQVLEEGELPPRAMTFTRELVEGTMAKRDAIDAI 62 Query: 66 MKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 ++ Y LE L V++ +LR+ALYE+ + P +V INEAIELAK+F E++ +FVN Sbjct: 63 IRKYAVGWRLERLAAVDRNILRMALYEMQYHRETPVRVVINEAIELAKNFNNEEAGRFVN 122 Query: 125 GVLDKAAPVIRPNKK 139 G+LD A + +++ Sbjct: 123 GLLDNARKDLGLSEE 137 >UniRef50_D2LH50 NusB antitermination factor n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LH50_RHOVA Length = 185 Score = 147 bits (372), Expect = 1e-34, Method: Composition-based stats. Identities = 49/141 (34%), Positives = 78/141 (55%), Gaps = 7/141 (4%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAE-----QDVKDVDVLYFRELLAGVATNT 59 R RAR AVQALY +++Q D++ V +FL + D +FR+++ G+A Sbjct: 20 PRTRARLAAVQALYQMEMTQRDLSLVLQEFLGRRFETVEIYAGADRSFFRDIVEGIARGQ 79 Query: 60 AYLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 A +D + +L+ L + + +A+LR +YEL+ R+DVP + INE +E+AK F Sbjct: 80 AKIDLEIAAHLASGWKLSRIDSILRAILRSGVYELTDRNDVPARAVINEYVEIAKDFFGG 139 Query: 118 DSHKFVNGVLDKAAPVIRPNK 138 + VNGVLD+ A R + Sbjct: 140 EEPGVVNGVLDRVARAKRSRE 160 >UniRef50_B8FQ61 N utilization substance protein B homolog n=2 Tax=Desulfitobacterium hafniense RepID=NUSB_DESHD Length = 148 Score = 147 bits (372), Expect = 1e-34, Method: Composition-based stats. Identities = 46/140 (32%), Positives = 81/140 (57%), Gaps = 4/140 (2%) Query: 4 AARRRARECAVQALYSWQLSQN--DIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 +RR ARE A+Q L+ +++ D+ +++ E V + + + EL G T+ Sbjct: 1 MSRRLARETALQVLFQLEMTGESQDLKSAIHKWADEFAVPEGSIPFAEELAEGTLTHKEV 60 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D ++ L + V++ +LR+A YE+ R D+P +V INEAIE+AK +G+E+S Sbjct: 61 IDENLEKLSEGWSLARMANVDRNLLRLASYEILFRKDIPGRVTINEAIEIAKRYGSEESG 120 Query: 121 KFVNGVLDKAAPVI-RPNKK 139 KF+NG+LDK + + ++K Sbjct: 121 KFINGILDKVVESVNKKDEK 140 >UniRef50_C4KD91 NusB antitermination factor n=1 Tax=Thauera sp. MZ1T RepID=C4KD91_THASP Length = 166 Score = 147 bits (372), Expect = 1e-34, Method: Composition-based stats. Identities = 61/137 (44%), Positives = 81/137 (59%), Gaps = 1/137 (0%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAE-QDVKDVDVLYFRELLAGVATNTAY 61 ARRRARE A+Q +Y W LS N+ V+ +E +++ +D F LL G Sbjct: 21 KMARRRARELALQGVYQWLLSGNNATTVQRHLESETENLDKIDRELFVSLLRGATGAADE 80 Query: 62 LDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 L G +P LSR + EL +E A+L + +EL D PY+V INEAIELAK +G D HK Sbjct: 81 LRGCFEPLLSRPVAELSPIEHAILLLGTHELRHNLDTPYRVVINEAIELAKGYGGTDGHK 140 Query: 122 FVNGVLDKAAPVIRPNK 138 FVNGVLDK + +RP + Sbjct: 141 FVNGVLDKLSTRLRPEE 157 >UniRef50_Q1D350 N utilization substance protein B homolog n=2 Tax=Cystobacterineae RepID=NUSB_MYXXD Length = 140 Score = 147 bits (372), Expect = 1e-34, Method: Composition-based stats. Identities = 50/138 (36%), Positives = 82/138 (59%), Gaps = 5/138 (3%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFL---AEQDVKDVDV-LYFRELLAGVATNT 59 ARR RE A+QALY +++ A+ E + +D D + REL+ GV ++ Sbjct: 2 GARRTGRERALQALYQLEMATATTAEALESAWSAAEESNKRDPDAVKFARELVEGVQSHR 61 Query: 60 AYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 +D L++ + L+ + ++++ VLR+ ++EL R D+P KV+INEA+EL K+FG E+ Sbjct: 62 DEIDQLIERHSHNWRLDRMSRIDRNVLRLGIFELKYRPDIPRKVSINEAVELGKNFGNEE 121 Query: 119 SHKFVNGVLDKAAPVIRP 136 S FVNG+LD+ A + Sbjct: 122 SSAFVNGLLDRVAVALNK 139 >UniRef50_Q5X720 N utilization substance protein B homolog n=6 Tax=Legionella RepID=NUSB_LEGPA Length = 147 Score = 147 bits (372), Expect = 1e-34, Method: Composition-based stats. Identities = 52/133 (39%), Positives = 83/133 (62%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 +RRAR+ A+QALY W +S D+ ++E QF ++ VD YF LL G+ T+ L+ Sbjct: 9 KRRARKFALQALYQWLMSGTDLHEIEAQFRTINNMDKVDGEYFCRLLYGIPTHVEALEAS 68 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 + PYL R + L +E VLRI +EL ++PYKV ++E++ L K FG+++ +++VNG Sbjct: 69 LLPYLDREINALNPIELTVLRIGSFELFHCPEIPYKVILDESVSLTKEFGSQEGYRYVNG 128 Query: 126 VLDKAAPVIRPNK 138 VL+ A +R + Sbjct: 129 VLNNLAKQVRSVE 141 >UniRef50_A5FQ51 N utilization substance protein B homolog n=5 Tax=Dehalococcoides RepID=NUSB_DEHSB Length = 143 Score = 147 bits (371), Expect = 2e-34, Method: Composition-based stats. Identities = 49/133 (36%), Positives = 79/133 (59%), Gaps = 1/133 (0%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 +RR+ARE +QALY L+ ++ DV + L E + +V + L V + L Sbjct: 2 TTSRRKAREIVLQALYEQDLAGHNAEDVLKRLLTENPQTEENVEFIFRLTNAVVKHKDLL 61 Query: 63 DGLMKPY-LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D ++ + + +E+L +++ VLR+A++E+ +DVP KVAINEA+ELAKSFG S + Sbjct: 62 DENIRQFASAWPVEQLSYIDRNVLRLAIFEIIHENDVPVKVAINEAVELAKSFGGNSSAR 121 Query: 122 FVNGVLDKAAPVI 134 F+NGVL + + Sbjct: 122 FINGVLSSVSKAL 134 >UniRef50_C4ZEV6 Sun protein n=4 Tax=Clostridiales RepID=C4ZEV6_EUBR3 Length = 469 Score = 146 bits (370), Expect = 2e-34, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 51/128 (39%), Gaps = 1/128 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNTAYLDGLMKP 68 RE A++ L V L + + D + L+ G LD ++ Sbjct: 42 RELALEMLIEINERGAFSHIVLRSVLDKYQYLSKQDRAFMTRLVDGTIEYMLQLDYIIDS 101 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 + + ++ + +LR+++Y++ VP NEA++LAK FVNGVL Sbjct: 102 FSKTKVRKMKPFIRNLLRMSVYQIKYMDAVPDSAVCNEAVKLAKRHKFAQLSGFVNGVLR 161 Query: 129 KAAPVIRP 136 A I Sbjct: 162 NIARNIDS 169 >UniRef50_C8W0Z5 NusB antitermination factor n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W0Z5_DESAS Length = 156 Score = 146 bits (370), Expect = 2e-34, Method: Composition-based stats. Identities = 40/131 (30%), Positives = 70/131 (53%), Gaps = 1/131 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +RR R+ A+Q L+ ++ D + +A+ + + R+L+ G + +D Sbjct: 1 MSRREGRQIAMQILFQIEVGGIDPEEAFKNTVADSTCPVPIMEFARQLVFGTLGHLKEID 60 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ L+ + V+K ++R+ALYE+ ++P V+ NEAIELAK FG E+S KF Sbjct: 61 RVISEISKGWRLDRIANVDKTLIRMALYEIFYEDNIPLNVSANEAIELAKIFGGEESGKF 120 Query: 123 VNGVLDKAAPV 133 VNG++ K Sbjct: 121 VNGIIGKVVQK 131 >UniRef50_A6W2L6 N utilization substance protein B homolog n=4 Tax=Gammaproteobacteria RepID=NUSB_MARMS Length = 174 Score = 146 bits (370), Expect = 2e-34, Method: Composition-based stats. Identities = 66/135 (48%), Positives = 94/135 (69%), Gaps = 2/135 (1%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFL--AEQDVKDVDVLYFRELLAGVATNTAYLD 63 R +R A+QA+Y WQ+++ ++++E QF+ ++D+ D +YFRELL GV + LD Sbjct: 27 RSASRRLALQAVYQWQMNKTAVSEIETQFVIDQDRDMDSCDKVYFRELLQGVTASAKKLD 86 Query: 64 GLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 L + L R L EL +E AV+RI YELS+R DVPY+VAINE++ELAK FGA +SHK+V Sbjct: 87 TLFEELLDRPLSELDPIELAVMRIGSYELSQRLDVPYRVAINESVELAKGFGATESHKYV 146 Query: 124 NGVLDKAAPVIRPNK 138 NG+LDK A +R + Sbjct: 147 NGILDKLAQRVRREE 161 >UniRef50_Q30YL1 N utilization substance protein B homolog n=5 Tax=Desulfovibrionales RepID=NUSB_DESDG Length = 154 Score = 146 bits (369), Expect = 2e-34, Method: Composition-based stats. Identities = 54/141 (38%), Positives = 80/141 (56%), Gaps = 7/141 (4%) Query: 4 AARRRARECAVQALYSWQLSQN-DIADVEYQFLAEQDVKDVD-----VLYFRELLAGVAT 57 ++RR +R A Q LY S D+A ++ + A DV D V + EL+ G T Sbjct: 8 SSRRSSRALAFQVLYGLNFSPAKDLAQLQEAYCASPDVSDRGGEAHPVGFAWELIEGTWT 67 Query: 58 NTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 N LD ++ + +E +G++E +LR+A+YE+ R+DVP KVAINE IEL+K FG Sbjct: 68 NQKALDEIITRFAQNWRVERIGKIELTILRLAVYEMLYRADVPPKVAINEGIELSKQFGD 127 Query: 117 EDSHKFVNGVLDKAAPVIRPN 137 + S F+NG+LD AA + Sbjct: 128 DKSRNFINGILDAAAKALEAG 148 >UniRef50_Q1H424 N utilization substance protein B homolog n=2 Tax=Betaproteobacteria RepID=NUSB_METFK Length = 154 Score = 146 bits (369), Expect = 2e-34, Method: Composition-based stats. Identities = 56/134 (41%), Positives = 81/134 (60%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 +RR++RE ++ +Y ++Q D + + + + D D YFR+LL GVA + LD Sbjct: 15 SRRKSRELVLKGIYLGLMNQKDTSVIIRELADDPDFDRADYEYFRQLLEGVAESIDELDA 74 Query: 65 LMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + L R + EL +E A+L IA YEL +PY+VAINE +ELAK +G D HK+VN Sbjct: 75 RLAGLLDRQVSELSPIEHAILCIAAYELIHDVTIPYRVAINEGVELAKLYGGTDGHKYVN 134 Query: 125 GVLDKAAPVIRPNK 138 GVLDK A RP++ Sbjct: 135 GVLDKIAAEARPDE 148 >UniRef50_C8WLN1 NusB antitermination factor n=2 Tax=Coriobacteriaceae RepID=C8WLN1_EGGLE Length = 195 Score = 146 bits (369), Expect = 2e-34, Method: Composition-based stats. Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 3/139 (2%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 K R AR A+Q LY+ +++ + + D Y +L+ GV ++ Sbjct: 4 KRHERTSARRAALQVLYTSEITDESP-AAIAEGNSRLDEDGPLPEYALKLVLGVESHRCA 62 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED-S 119 +D + L + V++++LR+A +E+ DVP V INEA+ELAK FG ED S Sbjct: 63 IDNHLAATSENWSLARMPIVDRSILRLATFEMMYIDDVPTSVTINEAVELAKDFGGEDES 122 Query: 120 HKFVNGVLDKAAPVIRPNK 138 H+FVNG+L + A ++ + Sbjct: 123 HRFVNGILGRIAKMLEGEE 141 >UniRef50_B3QV72 N utilization substance protein B homolog n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=NUSB_CHLT3 Length = 211 Score = 146 bits (369), Expect = 3e-34, Method: Composition-based stats. Identities = 42/136 (30%), Positives = 73/136 (53%), Gaps = 2/136 (1%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKD-VDVLYFRELLAGVATNTAYLD 63 +RR+ RE A+Q LY++++ + + V + E V D + +++ V N +D Sbjct: 4 SRRQIRELAMQVLYAYEVRKEKVDKVAKGIIPEDVVADIKAKDFIFKIINSVIQNIQDID 63 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + + L + ++K ++RIA+ E+ DVP KV+INEAIE+AK + + S KF Sbjct: 64 THIAKHADNWELNRMAIIDKNLMRIAIAEMLYLDDVPPKVSINEAIEIAKRYSTDKSSKF 123 Query: 123 VNGVLDKAAPVIRPNK 138 VNG+LD ++ Sbjct: 124 VNGILDATYNEVKSKG 139 >UniRef50_D2RNU3 Sun protein n=3 Tax=Veillonellaceae RepID=D2RNU3_ACIFE Length = 446 Score = 145 bits (367), Expect = 4e-34, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 57/132 (43%), Gaps = 1/132 (0%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK A+ RE A+ L L Q L + +D EL+ G Sbjct: 1 MKGTAK-NPREAALLILEQIFLRGAYANLALDQGLRGATLSPLDRKLTTELVYGTVKTMG 59 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD + ++R L +L + +LR+ Y+L +P A NE+++LAK + E + Sbjct: 60 TLDWYLSRVVNRPLRKLDPLVLVILRLGAYQLLYLDRIPASAACNESVKLAKKWVHEGAG 119 Query: 121 KFVNGVLDKAAP 132 K VNG L + A Sbjct: 120 KLVNGALRQLAR 131 >UniRef50_Q1ISD3 N utilization substance protein B homolog n=2 Tax=Acidobacteria RepID=NUSB_ACIBL Length = 146 Score = 145 bits (367), Expect = 4e-34, Method: Composition-based stats. Identities = 38/141 (26%), Positives = 71/141 (50%), Gaps = 2/141 (1%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFL-AEQDVKDVDVLYFRELLAGVATNT 59 +K RR++RE A+Q L+ + + VE F +D+++ + +L + Sbjct: 3 IKTGTRRKSRELALQMLFQMDMGKQSADHVEKTFWAERKDLEEEVRSFAIDLFHVAEKRS 62 Query: 60 AYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 +D L++ + +E + V++ +LR A E P V INE++E+A+ F + + Sbjct: 63 EEIDKLIEKHAEHWRMERMAAVDRNILRGACAEFMGFPKTPKPVVINESLEIARRFSSPE 122 Query: 119 SHKFVNGVLDKAAPVIRPNKK 139 S +F+NGVLD A + +K Sbjct: 123 SVQFINGVLDSVARELDAERK 143 >UniRef50_A5F5Z6 N utilization substance protein B homolog n=91 Tax=Gammaproteobacteria RepID=NUSB_VIBC3 Length = 156 Score = 145 bits (367), Expect = 4e-34, Method: Composition-based stats. Identities = 79/149 (53%), Positives = 105/149 (70%), Gaps = 14/149 (9%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDV--------------DVLY 47 KPAARR AR+ A+QA+YSWQ+++ ++A +E QFL + DV Y Sbjct: 6 KPAARRNARQFALQAIYSWQITKENVATIEEQFLTSGKYDEEEHRAAEPALAAPETDVSY 65 Query: 48 FRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEA 107 FR+LLAGV N LD ++P++SR +++L +E A+LR+A+YE+++R DVPYKV INEA Sbjct: 66 FRDLLAGVVLNHNELDSKLRPFVSRPMQDLDMMELALLRLAMYEMTRREDVPYKVVINEA 125 Query: 108 IELAKSFGAEDSHKFVNGVLDKAAPVIRP 136 IELAK F AEDSHKFVNGVLDKAAP +R Sbjct: 126 IELAKVFAAEDSHKFVNGVLDKAAPHVRK 154 >UniRef50_C7LSH4 NusB antitermination factor n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LSH4_DESBD Length = 154 Score = 145 bits (367), Expect = 4e-34, Method: Composition-based stats. Identities = 50/142 (35%), Positives = 72/142 (50%), Gaps = 6/142 (4%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVE----YQFLAEQDVK-DVDVLYFRELLAGVAT 57 RR R A Q +YS Q D F E++ + Y L+ GV Sbjct: 2 THNRRHQRRFAFQVIYSLVFGQKMSKDSLIKSFDNFWTEEEFDMERQDSYAWTLVEGVFD 61 Query: 58 NTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 N +D ++ + L + +VE +LR++L+E+ D+P KVA+NEAIELAK FG Sbjct: 62 NYDSIDEIITQHSQHWKLNRIAKVELTILRLSLFEMLFCPDIPIKVAMNEAIELAKDFGD 121 Query: 117 EDSHKFVNGVLDKAAPVIRPNK 138 ++S FVNGVLD AA + N+ Sbjct: 122 DNSKTFVNGVLDAAAKGAQRNE 143 >UniRef50_A8ZTU6 N utilization substance protein B homolog n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=NUSB_DESOH Length = 154 Score = 145 bits (366), Expect = 5e-34, Method: Composition-based stats. Identities = 47/139 (33%), Positives = 77/139 (55%), Gaps = 4/139 (2%) Query: 4 AARRRARECAVQALYSWQLSQN---DIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 A+RRR+RE A+Q L+S+ L+ D F A ++ + + +F L GV Sbjct: 2 ASRRRSRELALQFLFSYDLNAAGAGDFDAWMEDFCARFNLSEKNFPHFFTLAQGVKNRWE 61 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 L+ L+ L + V++ V+RIA++E+ DVP +VAINEAIE+ K +G ++S Sbjct: 62 KLNDLLAESSEHWKLSRMSGVDRNVMRIAIFEMLYCDDVPPRVAINEAIEIGKKYGTDES 121 Query: 120 HKFVNGVLDKAAPVIRPNK 138 F+NGVLD+ + ++ Sbjct: 122 GAFINGVLDRINKELGGSE 140 >UniRef50_B5ELV9 NusB antitermination factor n=3 Tax=Acidithiobacillus RepID=B5ELV9_ACIF5 Length = 147 Score = 145 bits (366), Expect = 6e-34, Method: Composition-based stats. Identities = 60/141 (42%), Positives = 85/141 (60%), Gaps = 3/141 (2%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNT 59 MK + RR AR+ AVQALY WQ++ A++E QF ++ + ++ DV +F+ L GV Sbjct: 1 MKISRRRLARQAAVQALYQWQMNPGHCAEIELQFTSDPERLQGADVAFFKSLWQGVCAAI 60 Query: 60 AYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 + LD + + R +E+ +VE+A+LR+A EL PY+V INEAIEL K FG E Sbjct: 61 SELDPAIAEEVQDRRWADEVSEVERAILRLAACELRDYPQTPYRVIINEAIELDKDFGGE 120 Query: 118 DSHKFVNGVLDKAAPVIRPNK 138 H+FVN VLDK A R + Sbjct: 121 QGHRFVNAVLDKLAQRWRSAE 141 >UniRef50_B0MGA0 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0MGA0_9FIRM Length = 448 Score = 144 bits (365), Expect = 6e-34, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 51/128 (39%), Gaps = 1/128 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDV-DVLYFRELLAGVATNTAYLDGLMKP 68 RE A+ L + + L + + D +F L G +D ++ Sbjct: 5 RELALDVLMKIDKKEELSHIAIGETLEKYQFSEKKDRAFFTRLCQGTLERRLTIDYVIDL 64 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 Y + ++ + +++LR+ ++ +P A NE ++LAK G FVNGVL Sbjct: 65 YSKTKVRKMKPLVRSLLRMGACQILFMDHIPDSAACNECVKLAKKRGFSKLSGFVNGVLR 124 Query: 129 KAAPVIRP 136 + + Sbjct: 125 TISRQKQE 132 >UniRef50_C6D4F5 Sun protein n=87 Tax=Bacilli RepID=C6D4F5_PAESJ Length = 491 Score = 144 bits (365), Expect = 6e-34, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 55/132 (41%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 +PA R RE A+ L + + L E ++ D EL+ G Sbjct: 33 RPARVRTPRELALDTLVKVAETGAYSNLQLNRVLQEAQLQRADAALVTELVYGTIQRQLT 92 Query: 62 LDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 LD + + ++ L +L +LR++ Y+L +P A+NEA+ +AK G + Sbjct: 93 LDHWLGKFAAKGLRKLEPWVHQLLRMSAYQLLYLDRIPAHAAVNEAVTIAKRRGHQGISG 152 Query: 122 FVNGVLDKAAPV 133 VNG+L Sbjct: 153 MVNGILRSIDRN 164 >UniRef50_A6Q4Q9 N utilization substance protein B homolog n=20 Tax=Epsilonproteobacteria RepID=NUSB_NITSB Length = 139 Score = 144 bits (365), Expect = 7e-34, Method: Composition-based stats. Identities = 44/137 (32%), Positives = 75/137 (54%), Gaps = 2/137 (1%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 A R +ARE + LY++ L +I L E+ +++ + L G + +D Sbjct: 2 ATRHQAREAVIGLLYAYDLGNPEIKKFAEDILEEKKIRNKQREFALALFKGTVEHLDTID 61 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++K +L +E +G +E+A+LR+ +YEL +D+ + INEA+ELAK G + S KF Sbjct: 62 EMIKKHLESWDMERVGHIERAILRLGVYELFY-TDLDPAIVINEAVELAKKLGTDQSPKF 120 Query: 123 VNGVLDKAAPVIRPNKK 139 +NGVLD A ++ + Sbjct: 121 INGVLDAIAKEVKNGSQ 137 >UniRef50_Q3A4L2 N utilization substance protein B homolog n=2 Tax=Desulfuromonadales RepID=NUSB_PELCD Length = 156 Score = 144 bits (364), Expect = 9e-34, Method: Composition-based stats. Identities = 47/153 (30%), Positives = 77/153 (50%), Gaps = 18/153 (11%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKD----------------VD 44 M RR RE A++ +YS+ + + + F + +D Sbjct: 1 MASGMRRTGRELAIKIIYSFDGTG-SVEALLATFWSNFRFRDDVLGEPLEDSSQAVAEPV 59 Query: 45 VLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVA 103 + +L+ GVA N +DGL+ + + LE + +V+ A+LR+A YEL DVP V Sbjct: 60 REFAEDLVRGVAENLEKIDGLIGEFSTNWSLERMARVDLAILRMATYELLGHLDVPVSVI 119 Query: 104 INEAIELAKSFGAEDSHKFVNGVLDKAAPVIRP 136 INEA+E+ K +G +++ FVNG+LD+ + RP Sbjct: 120 INEAVEIGKRYGTKETPSFVNGILDRISRTCRP 152 >UniRef50_A0Q099 N utilization substance protein B homolog n=3 Tax=Clostridium RepID=NUSB_CLONN Length = 133 Score = 143 bits (363), Expect = 1e-33, Method: Composition-based stats. Identities = 42/132 (31%), Positives = 78/132 (59%), Gaps = 3/132 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLA--EQDVKDVDVLYFRELLAGVATNTAY 61 RR++RE A++ L+ +++ + +++ F + ++++VD +Y +++ G+ N Sbjct: 1 MNRRKSREVAMKLLFEMSINKEEFSEILKNFKENTDTNMENVDFIYINKIVNGIEQNKED 60 Query: 62 LDGLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D ++ L L L +++ +LRI+ YE+ D+P KVA+NEAIELAK + A++S Sbjct: 61 IDKKIEENLTKWKLNRLSKIDLTILRISTYEIMFMEDIPNKVAVNEAIELAKKYSADNSP 120 Query: 121 KFVNGVLDKAAP 132 FVNGVL Sbjct: 121 AFVNGVLGNMIK 132 >UniRef50_UPI00006A2BCA UPI00006A2BCA related cluster n=1 Tax=Xenopus (Silurana) tropicalis RepID=UPI00006A2BCA Length = 151 Score = 143 bits (363), Expect = 1e-33, Method: Composition-based stats. Identities = 52/136 (38%), Positives = 71/136 (52%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 +AR RARE A+QALY + +N+ + ++ D ++ LL G L Sbjct: 11 KSARSRAREFALQALYQHLVGRNEASAIDLFTRDLAGFHKADAAHYDALLHGCVRTEDAL 70 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 D L+ P L R L +E AV+ I YE DVP++V +NE IELAK FG D HK+ Sbjct: 71 DALIVPQLDRPLAAFSPIEHAVMWIGAYEFQHCMDVPWRVTLNECIELAKEFGGTDGHKY 130 Query: 123 VNGVLDKAAPVIRPNK 138 VN VL AP +R + Sbjct: 131 VNAVLGGLAPRLRAAE 146 >UniRef50_A8MH88 Sun protein n=7 Tax=Clostridiaceae RepID=A8MH88_ALKOO Length = 445 Score = 143 bits (363), Expect = 1e-33, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 1/124 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 RE A++ LY +++ + L + +D EL+ GV N Y+D ++ + Sbjct: 4 REGALKVLYEINVNEAFSNIALNKELNNESYNLLDRNLLTELVYGVLENQIYIDHVLSQF 63 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 + L+++ +LR+ +Y+L VP A+NE + L+K + + + F+NGVL Sbjct: 64 SNFQLDKMNPYTLNLLRLGIYQLLFLDRVPSFAAVNETVNLSKKYC-KKTTGFINGVLRN 122 Query: 130 AAPV 133 Sbjct: 123 VQRN 126 >UniRef50_B5JUN2 Transcription antitermination factor NusB n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JUN2_9GAMM Length = 188 Score = 143 bits (362), Expect = 2e-33, Method: Composition-based stats. Identities = 58/145 (40%), Positives = 88/145 (60%), Gaps = 7/145 (4%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQ-------DVKDVDVLYFRELLAG 54 + ARR+ R+ +QALY + + + QF ++ D+ VD +F+ L+ Sbjct: 44 RTEARRKTRQRILQALYQCYFNPLPSSKLVQQFYDDEVGEEEGNDMFGVDADFFQAALST 103 Query: 55 VATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 T LD L +L ++ L VE +LR+A++ELS+R DVP +V INEA+ELAKS+ Sbjct: 104 CVDKTEQLDELYCAHLKMPIDRLDPVELCILRLAVFELSERLDVPRRVVINEAVELAKSY 163 Query: 115 GAEDSHKFVNGVLDKAAPVIRPNKK 139 GAED HKF+NGV+DK A +RP+++ Sbjct: 164 GAEDGHKFINGVIDKTARDLRPHEQ 188 >UniRef50_C0GE32 NusB antitermination factor n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GE32_9FIRM Length = 138 Score = 143 bits (362), Expect = 2e-33, Method: Composition-based stats. Identities = 48/136 (35%), Positives = 79/136 (58%), Gaps = 1/136 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +RR ARE A + L+ + + +N++ Q + E ++ V + R+L+ G N +D Sbjct: 1 MSRRLAREIAFKTLFQYDIGKNEVEPTISQLIEENGLEGAGVEFSRQLVLGTLKNLEAID 60 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + YL + L L V++ VLR+A +E+ R D+P V INEA+EL+K+F +E++ KF Sbjct: 61 KALAGYLQKWELGRLAAVDRNVLRLAAFEILYREDIPAAVTINEALELSKAFHSEEAAKF 120 Query: 123 VNGVLDKAAPVIRPNK 138 +NGVLDK A + Sbjct: 121 LNGVLDKLARHHEGKE 136 >UniRef50_D1CCN3 NusB antitermination factor n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CCN3_THET1 Length = 153 Score = 143 bits (361), Expect = 2e-33, Method: Composition-based stats. Identities = 47/132 (35%), Positives = 78/132 (59%), Gaps = 1/132 (0%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R +AR A+Q LY + ++ ++ + E+++ + Y +L GV N D L Sbjct: 12 RHQARALAMQVLYEAETTRKQPYEILQRRRNEENIPEQVHAYASDLAIGVWQNRKEYDSL 71 Query: 66 MKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + + + ++++ +V++ +LRIA++E+ +R+DVP AINEA+ELAK +GAE S KFVN Sbjct: 72 ITRFTPTWTIDQMAKVDRNILRIAVHEMLRRNDVPIAAAINEAVELAKEYGAEASPKFVN 131 Query: 125 GVLDKAAPVIRP 136 GVL A I Sbjct: 132 GVLGAIADAIES 143 >UniRef50_Q2RK22 Sun protein n=3 Tax=Clostridia RepID=Q2RK22_MOOTA Length = 457 Score = 143 bits (361), Expect = 2e-33, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 50/125 (40%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 ARE A+Q +Y + L + + EL LD + Sbjct: 10 AREAALQVIYRVTEEGAYAGLALDEVLKSAGLDGRERALATELAYSAIKAWGTLDWALGL 69 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 +L + LE+L + VLR+ +L +P + AI E +ELAK +G + VNGVL Sbjct: 70 FLRQPLEKLPPWIRCVLRLGATQLLYVPRIPPRAAIYETVELAKKYGHRGTTGLVNGVLR 129 Query: 129 KAAPV 133 Sbjct: 130 HLDRQ 134 >UniRef50_D2L8L5 NusB antitermination factor n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L8L5_9DELT Length = 167 Score = 143 bits (361), Expect = 2e-33, Method: Composition-based stats. Identities = 49/142 (34%), Positives = 73/142 (51%), Gaps = 7/142 (4%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAE------QDVKDVDVLYFRELLAGVAT 57 A+RR+AR+ A + LY + A + + EL+ GV Sbjct: 19 ASRRKARKQAFECLYGLIFESAADERSLRRVFARCPHDVMEGEDGAGQAFAWELVQGVWQ 78 Query: 58 NTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 N LD L+ + L + +VE +LR+ALYE+ RSD+P +VA+NEAIELAK +G Sbjct: 79 NQRELDALIVKFSKNWKLSRIAKVELTILRLALYEILHRSDIPLRVALNEAIELAKRYGD 138 Query: 117 EDSHKFVNGVLDKAAPVIRPNK 138 E+S F+NG+LD A + + Sbjct: 139 ENSRNFINGILDAVAKAVDSGE 160 >UniRef50_Q3BXH9 N utilization substance protein B homolog n=20 Tax=Xanthomonadaceae RepID=NUSB_XANC5 Length = 162 Score = 142 bits (360), Expect = 3e-33, Method: Composition-based stats. Identities = 63/124 (50%), Positives = 81/124 (65%) Query: 15 QALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLL 74 QA+Y+WQ+S V QF EQ + D+ YF L+ GV +N A LD + PYL R + Sbjct: 30 QAVYAWQISGGFAKQVIAQFAHEQAHEVADLAYFENLVEGVLSNRAELDTALTPYLDRSV 89 Query: 75 EELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVI 134 EE+ +E+AVLR+A YEL R DVPY+V INEAIE AK FG+E H +VNGVLD+AA Sbjct: 90 EEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRFGSEHGHTYVNGVLDRAAVEW 149 Query: 135 RPNK 138 R + Sbjct: 150 RKVE 153 >UniRef50_C1DB31 N utilization substance protein B homolog n=3 Tax=Neisseriaceae RepID=NUSB_LARHH Length = 165 Score = 142 bits (360), Expect = 3e-33, Method: Composition-based stats. Identities = 58/138 (42%), Positives = 83/138 (60%), Gaps = 1/138 (0%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK RRRARE AVQ +Y WQL+ A +E + D FR LL GV + Sbjct: 1 MKT-PRRRAREFAVQGIYQWQLNALTPATIEKNLRDNEQFAKADEALFRTLLYGVLNDPV 59 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 ++ + + R E++ VE+AVL +A +EL+++++ P V INEAIE+AK+FG + H Sbjct: 60 RIESAIASHFERAPEDVSPVERAVLLMAAFELTQQAETPLAVIINEAIEIAKTFGGAEGH 119 Query: 121 KFVNGVLDKAAPVIRPNK 138 +FVNGVLDK A +RP + Sbjct: 120 RFVNGVLDKYAAEVRPEE 137 >UniRef50_B0S1M1 N utilization substance protein B homolog n=2 Tax=Finegoldia magna RepID=NUSB_FINM2 Length = 137 Score = 142 bits (360), Expect = 3e-33, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 70/134 (52%), Gaps = 1/134 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +RR++R+ A+Q +Y ++ + +F Q++ D+ +F+E++ + + Sbjct: 1 MSRRQSRKSAMQLIYEMNMNGDYDKQRIEEFCKYQNINKNDIEFFKEIVLNFIEHIDDIV 60 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 +++ + L+ + +++ ++L++ + E+ P VAINEA+ELAK + E S+ F Sbjct: 61 NIIENNTKQWNLDRINKLDLSILQVGVCEILYVESTPDSVAINEAVELAKEYSTEKSYSF 120 Query: 123 VNGVLDKAAPVIRP 136 +NG+L Sbjct: 121 INGILGSVLKRKEN 134 >UniRef50_B0A9Y2 Putative uncharacterized protein n=2 Tax=Clostridium RepID=B0A9Y2_9CLOT Length = 441 Score = 142 bits (360), Expect = 3e-33, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 1/128 (0%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 ++R A + L+ + +QN + + ++ + D + E++ GV N YLD ++ Sbjct: 2 KSRNLAYKVLFDIEKNQNYSNMAINKHFKDCNLDNRDRGFATEIIYGVVENKIYLDYIID 61 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 +L K +LR+ +Y++ V A+NE + L K S FVN VL Sbjct: 62 KLSKIKSNKLNLKVKILLRMGIYQILFLDSVSDYAAVNETVNLTKKL-DNRSAGFVNAVL 120 Query: 128 DKAAPVIR 135 Sbjct: 121 RNVIRQKE 128 >UniRef50_Q0AZF7 N utilization substance protein B homolog n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=NUSB_SYNWW Length = 134 Score = 142 bits (360), Expect = 3e-33, Method: Composition-based stats. Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 1/128 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +RR+ARE A + ++ Q D + + + + + +L+ G A +D Sbjct: 1 MSRRKARETAFKVVFQVDQVQADAKKAFDYLVLHDKLAEKNQGFSWDLIQGTLEKQAEID 60 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ Y L+ + V++ ++R+A YE+ D VAI+EAIE+AK +G E S F Sbjct: 61 QMIASYSREWALDRMSSVDRNIMRVAAYEILYLEDSQAVVAIDEAIEIAKKYGDEGSGSF 120 Query: 123 VNGVLDKA 130 VN +LDK Sbjct: 121 VNAILDKI 128 >UniRef50_A0LI21 N utilization substance protein B homolog n=4 Tax=Deltaproteobacteria RepID=NUSB_SYNFM Length = 151 Score = 142 bits (359), Expect = 3e-33, Method: Composition-based stats. Identities = 44/143 (30%), Positives = 77/143 (53%), Gaps = 7/143 (4%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVE------YQFLAEQDVKDVDVLYFRELLAGVAT 57 RRR+RE A+Q LY +++ + + + V + E++ GV+ Sbjct: 2 GRRRRSREMALQVLYQMEMAVLPPEEALGLYYQLFDDDEKHRVPAEVRPFAEEIVRGVSL 61 Query: 58 NTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 + A +D ++ L + V++ +LRIA++E+ D+P KV+INEAI+L K+FG+ Sbjct: 62 HRARIDEMITSASEHWRLARMSLVDRNILRIAVFEMLFCFDIPPKVSINEAIDLGKTFGS 121 Query: 117 EDSHKFVNGVLDKAAPVIRPNKK 139 DS F+NG+LD P++ N + Sbjct: 122 PDSGAFINGILDHILPLLEANGR 144 >UniRef50_C4L3F7 N utilization substance protein B homolog n=2 Tax=Exiguobacterium RepID=NUSB_EXISA Length = 128 Score = 142 bits (359), Expect = 3e-33, Method: Composition-based stats. Identities = 46/134 (34%), Positives = 72/134 (53%), Gaps = 8/134 (5%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK R ARE A+Q L+ ++S+ ++ + L ++ ++ +L+ G + Sbjct: 1 MK---RHEAREKAIQTLFQIEVSKLEVDEAIEFALDGEESDP----FYEQLVTGTLEHIE 53 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D L+ L L+ LG VE+ +LR+A +EL +P V INEA+ELAKSFG E++ Sbjct: 54 DIDALLVENLKNWRLDRLGNVERTILRMATFELLYVETIPENVTINEAVELAKSFGDEEA 113 Query: 120 HKFVNGVLDKAAPV 133 K VNGVL Sbjct: 114 GKLVNGVLGNIIKE 127 >UniRef50_B3EF03 Sun protein n=11 Tax=Chlorobiaceae RepID=B3EF03_CHLL2 Length = 451 Score = 142 bits (358), Expect = 4e-33, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 5/136 (3%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 +RE A++ L + + + ++ L+ + D EL+ GV LD + Sbjct: 9 SRELALKVLQNIESGEKKSGTALHEQLSHTSLNQNDRALATELVNGVLRRRLTLDTFIGR 68 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 Y E+ V K +LRI Y+L +P+ A+NE++ LA+ + E K VN VL Sbjct: 69 YYHHRYEKAAPVLKNILRIGAYQLIYLDRIPHWAAVNESVSLARRYKGEHMAKLVNAVLR 128 Query: 129 K-----AAPVIRPNKK 139 + + P+ K Sbjct: 129 NITPETISADLDPSGK 144 >UniRef50_P94464 Ribosomal RNA small subunit methyltransferase B n=24 Tax=Bacillales RepID=RSMB_BACSU Length = 447 Score = 142 bits (358), Expect = 4e-33, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 67/133 (50%), Gaps = 4/133 (3%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK + R+ A++AL + +Q + + ++ D + EL+ G N Sbjct: 1 MKKTS---VRDIALEALIKLEQNQAYSNLLLKSVIKSNELSDQNRGLLTELVYGTLQNKI 57 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD ++KP++++ +++ +LR++LY++ +P + AI+EA+E+AK G + Sbjct: 58 ALDYMLKPFINKP-QKVKPWVIQLLRLSLYQMEYLEKIPDRAAIHEAVEIAKIRGHKGIA 116 Query: 121 KFVNGVLDKAAPV 133 FVNGVL Sbjct: 117 SFVNGVLRSIQRE 129 >UniRef50_Q2LQK4 N utilization substance protein B homolog n=1 Tax=Syntrophus aciditrophicus SB RepID=NUSB_SYNAS Length = 161 Score = 142 bits (358), Expect = 5e-33, Method: Composition-based stats. Identities = 42/137 (30%), Positives = 74/137 (54%), Gaps = 3/137 (2%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 M+ RR ARE A+Q LYS ++ + + + + A + + L+ G + Sbjct: 12 MR--QRRIAREIALQVLYSLEVVEMEAGEAIELYWAHYEAPMDARPFSSLLIEGAWKHRD 69 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D L+ + + + +V+K++LR+A++EL D+P KV +NEAI+L K +G+E+S Sbjct: 70 QIDSLIGGCSANWSIARMSKVDKSILRMAVFELCFCEDIPPKVTMNEAIDLGKVYGSENS 129 Query: 120 HKFVNGVLDKAAPVIRP 136 F+NG+LD I Sbjct: 130 GSFINGILDALYAKIHK 146 >UniRef50_B1H071 Transcription antitermination factor NusB n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1H071_UNCTG Length = 142 Score = 141 bits (357), Expect = 7e-33, Method: Composition-based stats. Identities = 44/136 (32%), Positives = 73/136 (53%), Gaps = 2/136 (1%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 RR+AREC++ LY+ I + F + ++ +L GV N LD Sbjct: 2 GTRRKARECSLHMLYAVDNCNVPIESIYNSFAVYFPKGEAYRMFALDLFKGVCDNKEDLD 61 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 L+K +E + V++ ++R+A YE+ +++P +V I+EA+E++K + +DS KF Sbjct: 62 SLIKQCAKNWEIERMAAVDRNIIRLATYEIMATTNIPIRVIIDEAVEISKKYSTKDSSKF 121 Query: 123 VNGVLDKAAPVIRPNK 138 VNG+LDK IR K Sbjct: 122 VNGILDKL-KKIRTQK 136 >UniRef50_A6CAX2 Transcription antitermination protein NusB n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CAX2_9PLAN Length = 171 Score = 140 bits (355), Expect = 9e-33, Method: Composition-based stats. Identities = 40/129 (31%), Positives = 62/129 (48%), Gaps = 2/129 (1%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R++AR VQ LY L+ + + + + E + EL GV LD Sbjct: 4 RKQARFLVVQMLYQIDLNPDISINEIREMIEEHGRNKTARTFAWELFTGVMEFKQQLDEH 63 Query: 66 MKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + L+ + ++ +LR+ YEL +D P V I+EA+ELA+ FG+ S +FVN Sbjct: 64 IVRVAENWTLKRMAVTDRNILRLGTYELLH-TDTPPAVVIDEAVELAREFGSAHSSQFVN 122 Query: 125 GVLDKAAPV 133 G+LDK Sbjct: 123 GILDKVVQR 131 >UniRef50_A9ET18 N utilization substance protein B homolog n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=NUSB_SORC5 Length = 140 Score = 140 bits (355), Expect = 1e-32, Method: Composition-based stats. Identities = 46/132 (34%), Positives = 73/132 (55%), Gaps = 1/132 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 AR RE A+Q L++ + + V F E Y E++ GVA + A +D Sbjct: 2 GARSTGREAALQMLFAVEAGGSSAPRVVATFWRETPGDPEGRAYADEVVVGVAEDLAAVD 61 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ + LE + +V++ VLR+ +EL R +VP V ++EA+ELAK +G+E+S F Sbjct: 62 EAIRKASTNWRLERMARVDRNVLRLGAWELMNRPEVPRAVILDEAVELAKRYGSEESGAF 121 Query: 123 VNGVLDKAAPVI 134 VNGVLD+ A + Sbjct: 122 VNGVLDRIAENL 133 >UniRef50_C5CI90 NusB antitermination factor n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CI90_KOSOT Length = 148 Score = 140 bits (355), Expect = 1e-32, Method: Composition-based stats. Identities = 41/140 (29%), Positives = 72/140 (51%), Gaps = 3/140 (2%) Query: 3 PAARRRARECAVQALYSWQLSQNDIA--DVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 RR+ RE ++++ + ++ A + + A + + L G+ + Sbjct: 6 TGQRRKIREIVFRSIFQYDFHKDFPAAMEYLERETAFYSLDKESKNRAKGYLMGIIEHLD 65 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D ++ YL + L ++++VLR+A YEL DVP +V +NEAIE+ K +G+++ Sbjct: 66 EIDSIITAYLKNWTFDRLASIDRSVLRLATYELLYVDDVPIEVTLNEAIEITKKYGSQEE 125 Query: 120 HKFVNGVLDKAAPVIRPNKK 139 KFVNGVLDK A +K Sbjct: 126 GKFVNGVLDKIAKERVSEEK 145 >UniRef50_C4FT85 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FT85_9FIRM Length = 457 Score = 140 bits (354), Expect = 1e-32, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 2/128 (1%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 + R A+Q L + + L++ ++K VD L+ G + LD Sbjct: 12 KHNVRFQALQLLVEIDWHDQYSNVLLNRALSQSELKPVDQGLLVNLVYGSIQHRLTLDFY 71 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 ++P++ ++L +++LR+ Y++ +P AINEA+ +AK G VNG Sbjct: 72 LEPFIKG--KKLEPWIRSLLRMTAYQMLYLERIPDHAAINEAVNIAKLNGHAGLAGLVNG 129 Query: 126 VLDKAAPV 133 VL Sbjct: 130 VLRNFRRQ 137 >UniRef50_A5G3J8 N utilization substance protein B homolog n=7 Tax=Desulfuromonadales RepID=NUSB_GEOUR Length = 145 Score = 140 bits (354), Expect = 2e-32, Method: Composition-based stats. Identities = 49/144 (34%), Positives = 77/144 (53%), Gaps = 9/144 (6%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQ--------DVKDVDVLYFRELLAGV 55 ++RR RE A+QALYS + D V + + D + EL+ GV Sbjct: 2 SSRREGRELALQALYSSDVEVMDGTTVLKRIMENFGDGSEPAVDAHSRSFSFAAELVNGV 61 Query: 56 ATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 N A +D ++ + + +V+ +LR+A++EL R D+P V INEAIE+AK F Sbjct: 62 VANRAAIDQRIEEKSKNWSISRMARVDLNILRLAVFELFYRPDIPKNVTINEAIEVAKKF 121 Query: 115 GAEDSHKFVNGVLDKAAPVIRPNK 138 GA+DS F+NG+LD+ A ++ + Sbjct: 122 GADDSPAFINGILDEIASLLPDKE 145 >UniRef50_B1YIQ1 Sun protein n=2 Tax=Exiguobacterium RepID=B1YIQ1_EXIS2 Length = 446 Score = 140 bits (353), Expect = 2e-32, Method: Composition-based stats. Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 1/128 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R+ AV L +Q L ++ + DV + EL+ G + LD +++P+ Sbjct: 4 RDAAVTTLLKIGQGGAFSTISVHQMLEKRAISKADVGLYTELVYGTLSRELTLDYILEPF 63 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 L++ ++L + +LR+++Y+L +P INEA+E+AK+ G K VNGVL Sbjct: 64 LTKQ-KKLDPFMRPLLRMSVYQLFYLDRIPDHAVINEAVEIAKTRGKPHIAKVVNGVLRN 122 Query: 130 AAPVIRPN 137 +P+ Sbjct: 123 VLRTGKPD 130 >UniRef50_UPI0001C42A93 transcription antitermination protein NusB n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42A93 Length = 135 Score = 140 bits (353), Expect = 2e-32, Method: Composition-based stats. Identities = 45/137 (32%), Positives = 76/137 (55%), Gaps = 4/137 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 RR AR A QALY L+ +++ L + + + +F +L+ G +D Sbjct: 1 MNRRLARLRAAQALYQMDLTGSEMESAIESVLEDNEKQS---EFFTQLVQGTTELKTKID 57 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + L + +G V++A++R+A+YE+ + D+P V NEAIELAK+FG E++ +F Sbjct: 58 ETISANLEGWTISRMGHVDRAIIRMAMYEMLEVEDIPVNVTFNEAIELAKAFGGEEAGRF 117 Query: 123 VNGVLDKAAPVIRPNKK 139 VNGVL K+ + ++K Sbjct: 118 VNGVLSKSIETLNLDRK 134 >UniRef50_B2S4Q2 N utilization substance protein B homolog n=3 Tax=Treponema RepID=NUSB_TREPS Length = 141 Score = 140 bits (353), Expect = 2e-32, Method: Composition-based stats. Identities = 44/130 (33%), Positives = 66/130 (50%), Gaps = 3/130 (2%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFL--AEQDVKDVDVLYFRELLAGVATNTAYLD 63 RRRAR A QAL++W + + D+ + R L G + +D Sbjct: 10 RRRARILAFQALFAWDAAGITPETLTQFTWLRRNPPPSTQDLGFSRLLFLGTLEHLREID 69 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 G + L L +V+KA+LR++ Y L + D+P V I+EA+ +A+ FG +DS +F Sbjct: 70 GCVSSRLEHWDFVRLNKVDKAILRLSAYSLLFQKDIPPVVVIHEAVSIARDFGTDDSFRF 129 Query: 123 VNGVLDKAAP 132 VNGVLD A Sbjct: 130 VNGVLDNIAK 139 >UniRef50_B1LAQ8 N utilization substance protein B homolog n=10 Tax=Thermotogaceae RepID=NUSB_THESQ Length = 142 Score = 140 bits (353), Expect = 2e-32, Method: Composition-based stats. Identities = 48/140 (34%), Positives = 76/140 (54%), Gaps = 2/140 (1%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK RRR R +AL+ + +++ + + + ++ R + G+ N Sbjct: 1 MKT-PRRRMRLAVFKALFQHEFRRDEDLEQILEEILDETYDKKAKEDARRYIRGIKENLP 59 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D L+ YL + L L V++ VLR+A YEL D+P +V I+EAIE+AK +G E+S Sbjct: 60 MIDNLISRYLEKWSLNRLSAVDRNVLRLATYELLFEKDIPIEVTIDEAIEIAKRYGTENS 119 Query: 120 HKFVNGVLDKAAPVIRPNKK 139 KFVNG+LD+ A P +K Sbjct: 120 GKFVNGILDRIAKEHAPKEK 139 >UniRef50_B4SCZ7 N utilization substance protein B homolog n=2 Tax=Chlorobium/Pelodictyon group RepID=NUSB_PELPB Length = 171 Score = 140 bits (353), Expect = 2e-32, Method: Composition-based stats. Identities = 46/142 (32%), Positives = 75/142 (52%), Gaps = 4/142 (2%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDV-LYFRELLAGVATNT 59 MK RR+ RE +QALY+ ++ DI L E+ + D + +F LL + + Sbjct: 1 MKTY-RRQIREKILQALYTIEIRDTDIDSAAGWLLTEEILADPNAMKFFNMLLKNIKEHM 59 Query: 60 AYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF-GAE 117 +D + + + + ++K ++R+AL E+ D+P KV+INEAIE+AK F + Sbjct: 60 EEIDRYIVKHTFNWDMSRIAIIDKNIIRMALTEILYCEDIPPKVSINEAIEIAKKFNSTD 119 Query: 118 DSHKFVNGVLDKAAPVIRPNKK 139 S KFVNG+LD ++ K Sbjct: 120 KSSKFVNGILDAIFNDLKNEGK 141 >UniRef50_Q5WF59 N utilization substance protein B homolog n=2 Tax=Bacillus RepID=NUSB_BACSK Length = 133 Score = 139 bits (352), Expect = 2e-32, Method: Composition-based stats. Identities = 43/127 (33%), Positives = 67/127 (52%), Gaps = 4/127 (3%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 RR AR AVQ LY L ++ L +++ ++ L+ G + +D Sbjct: 1 MNRRVARLRAVQTLYQLTLIDINVDKAIENTLNDEEEPS---EFYNTLVHGTLEHQDEID 57 Query: 64 GLMKPYLSR-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 G + L L+ LG V++A+ R+ L+E+ D+P V +NEAIELAK+FG D+ +F Sbjct: 58 GYLSENLKGYTLDRLGHVDRAIARMGLFEMLYLDDIPVNVTLNEAIELAKAFGGTDAGRF 117 Query: 123 VNGVLDK 129 +NGVL Sbjct: 118 INGVLSN 124 >UniRef50_UPI0001C36EDB sun protein n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C36EDB Length = 443 Score = 139 bits (352), Expect = 2e-32, Method: Composition-based stats. Identities = 35/127 (27%), Positives = 53/127 (41%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R AV+ L S + L D+ D + L GV LD ++ Sbjct: 5 RYTAVKLLDKTFRSGSYSNIQLDAGLKNSDLSPQDKRFCTALYYGVIERKITLDHILTGL 64 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 SR L +L + +LR +Y+L +VP A+NE+++LAK FG + VN VL Sbjct: 65 SSRPLSKLDSIIITILRCGIYQLLYMENVPDNAAVNESVKLAKKFGKTSASGMVNAVLRN 124 Query: 130 AAPVIRP 136 + Sbjct: 125 FIRKGKK 131 >UniRef50_C0EFK3 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EFK3_9CLOT Length = 441 Score = 139 bits (351), Expect = 3e-32, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 1/130 (0%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLM 66 R AR+ A+ AL L+ + D + +L GV LD ++ Sbjct: 4 RTARDLALSALLKMDKQGAYSNLAFDGMLSSSSLSPRDRDFAAKLFYGVLETKITLDYII 63 Query: 67 KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGV 126 Y + E++ + +LR+ LY++ D+ A+NE++ L K G + + FVN + Sbjct: 64 ASYATMKPEKISSDVRNILRLGLYQIKYL-DLEDFAAVNESVNLVKLRGKKSASGFVNAI 122 Query: 127 LDKAAPVIRP 136 L + Sbjct: 123 LRAFLRDGKN 132 >UniRef50_Q5F9Y0 N utilization substance protein B homolog n=22 Tax=Neisseria RepID=NUSB_NEIG1 Length = 141 Score = 139 bits (351), Expect = 3e-32, Method: Composition-based stats. Identities = 59/138 (42%), Positives = 80/138 (57%), Gaps = 1/138 (0%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK A RRR+RE AVQA+Y +++ ++ D D F +L G TN A Sbjct: 1 MKTA-RRRSRELAVQAVYQSLINRTAAPEIAKNIREMSDFAKADEELFNKLFFGTQTNAA 59 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 ++P L R ++L +E+AVL A +ELS + PY V INEAIE+ K+FG D H Sbjct: 60 DYIQKIRPLLDRDEKDLNPIERAVLLTACHELSAMPETPYPVIINEAIEVTKTFGGTDGH 119 Query: 121 KFVNGVLDKAAPVIRPNK 138 KFVNG+LDK A IRP++ Sbjct: 120 KFVNGILDKLAAQIRPDE 137 >UniRef50_D1VSJ6 Transcription antitermination factor NusB n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSJ6_9FIRM Length = 139 Score = 139 bits (351), Expect = 3e-32, Method: Composition-based stats. Identities = 40/133 (30%), Positives = 75/133 (56%), Gaps = 1/133 (0%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R+ AR A+Q LYS +L+++ + +F D + + Y +++ + N +D + Sbjct: 3 RKNARVGAMQLLYSMELNKDFSQENIEKFFENYDFSESEQSYINSVISELVNNLDSVDKV 62 Query: 66 MKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + L + L V++ +LR+A++E R D+P +V+INEA+E+AK + +E+S KFVN Sbjct: 63 LSDNLQGWTIPRLATVDREILRVAIFEFLYRKDIPVEVSINEAVEIAKKYSSEESPKFVN 122 Query: 125 GVLDKAAPVIRPN 137 G+L ++ Sbjct: 123 GILASILKNLKDE 135 >UniRef50_A6NUS8 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NUS8_9BACE Length = 447 Score = 139 bits (351), Expect = 3e-32, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 1/134 (0%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 P+ + ARE A+ AL + + + L E + D L GV N L Sbjct: 2 PSTDQTARETALLALSACERQGAWSDGFLKKTLREAGLDSRDAALATRLCFGVLQNRLLL 61 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG-AEDSHK 121 D + + + E++ + LR+ +Y+++ + +P+ A+NE++EL K + Sbjct: 62 DFYIGKFSTTRPEKMEIKVRNALRLGVYQMAFMTKIPHNAAVNESVELTKKHCKNPRAAG 121 Query: 122 FVNGVLDKAAPVIR 135 VNGVL + I Sbjct: 122 MVNGVLRNVSRNID 135 >UniRef50_Q136T4 N utilization substance protein B homolog n=36 Tax=Alphaproteobacteria RepID=NUSB_RHOPS Length = 174 Score = 138 bits (350), Expect = 4e-32, Method: Composition-based stats. Identities = 44/148 (29%), Positives = 73/148 (49%), Gaps = 11/148 (7%) Query: 2 KPAARR-RARECAVQALYSWQLSQNDIADVEYQF--------LAEQDVKDVDVLYFRELL 52 + A RR AR AVQALY + I D +F + + +FR+++ Sbjct: 24 RKANRRGAARLAAVQALYQMDIGGAGIDDTFAEFESHWIGNEVEGDQYLPAEAAFFRDIV 83 Query: 53 AGVATNTAYLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIEL 110 +GV + LD L+ L+ L + + +AV+R YEL R D+P +V ++E +++ Sbjct: 84 SGVVRDQTKLDPLIDEALAKGWPLARIDAIIRAVMRAGAYELEHRKDIPARVVVSEYVDV 143 Query: 111 AKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 A +F +D VN VLD+ A R ++ Sbjct: 144 AHAFVEKDETGMVNAVLDQIARQFRADE 171 >UniRef50_UPI0001745093 NusB antitermination factor n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001745093 Length = 145 Score = 138 bits (350), Expect = 4e-32, Method: Composition-based stats. Identities = 43/135 (31%), Positives = 66/135 (48%), Gaps = 2/135 (1%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 M RR R+ A+Q L++ + F + L+ G+ T+ Sbjct: 1 MAIGKRREGRQAAMQFLFAHDVHGKVEDTDRAAFWTLHSATQDIRAHAESLVTGIKTHQV 60 Query: 61 YLDGLMKPYLSR-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D + L E LG V++ +LR+A+YE+ ++VP V INEA+E++K FG + Sbjct: 61 QIDDCIAATLENFRFERLGVVDRNILRLAVYEMLH-TEVPVPVVINEAVEISKVFGDTQT 119 Query: 120 HKFVNGVLDKAAPVI 134 FVNGVLDK A I Sbjct: 120 RAFVNGVLDKIAKRI 134 >UniRef50_B1W456 N utilization substance protein B homolog n=7 Tax=Streptomyces RepID=NUSB_STRGG Length = 143 Score = 138 bits (350), Expect = 4e-32, Method: Composition-based stats. Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 5/140 (3%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDV---LYFRELLAGVATNTA 60 AAR +AR+ A Q L+ + V ++ D + EL+ G A Sbjct: 2 AARNKARKRAFQILFEADQRGESVQSVLADWVRLSRTDDRQPPVGEFTMELVEGYAQYAD 61 Query: 61 YLDGLMKPY-LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D L+ Y + ++ + V++++LR+ YEL P V I+EA++LAK F +DS Sbjct: 62 RIDDLIVTYAVDWEIDRMPVVDRSILRLGAYELIWMDGTPDAVVIDEAVQLAKEFSTDDS 121 Query: 120 HKFVNGVLDKAAPVIRPNKK 139 FVNG+L + ++PN + Sbjct: 122 PSFVNGLLARF-KDLKPNLR 140 >UniRef50_B4D6X5 NusB antitermination factor n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6X5_9BACT Length = 151 Score = 138 bits (350), Expect = 4e-32, Method: Composition-based stats. Identities = 48/137 (35%), Positives = 70/137 (51%), Gaps = 6/137 (4%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQ-----DVKDVDVLYFRELLAGVATN 58 RR RE AVQ LY LS + E ++ V ++ +L GV + Sbjct: 2 GKRREGREAAVQYLYQIDLSGETPVNAEQFWMLRSGPGKAPVAPKTRIFAEQLALGVRKH 61 Query: 59 TAYLDGLMKPYLSR-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 +DG +K Y + L+ L V++ +LR+A+YEL DV + INEAIE+AK FG + Sbjct: 62 LEEIDGYIKKYTANYELDRLAVVDRNILRVAIYELLHSPDVAPVIIINEAIEVAKKFGTD 121 Query: 118 DSHKFVNGVLDKAAPVI 134 S FVNG+LD+ + Sbjct: 122 KSGGFVNGILDRIKEEV 138 >UniRef50_A0Q113 Sun protein n=35 Tax=Clostridium RepID=A0Q113_CLONN Length = 443 Score = 138 bits (349), Expect = 5e-32, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 56/129 (43%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 +AR+ V L V Q L + + D D E++ G +D ++ Sbjct: 3 KARKICVDILEVVFNKNAYSNIVLRQTLNKNKIDDKDKGLITEIVYGTIKYKYTIDTILN 62 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 +L + ++ L +LRI +Y++ +P A+NEA+E+AK + + K VNGVL Sbjct: 63 NFLKKGIKSLDSYVLNILRITVYQIKFLDKIPNFAAVNEAVEIAKKEKSVGASKLVNGVL 122 Query: 128 DKAAPVIRP 136 + Sbjct: 123 RNYLRNLDK 131 >UniRef50_C7N4M1 Transcription antitermination factor NusB n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N4M1_SLAHD Length = 183 Score = 138 bits (349), Expect = 5e-32, Method: Composition-based stats. Identities = 43/137 (31%), Positives = 74/137 (54%), Gaps = 3/137 (2%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 K R R A+Q LY + + V + + ++ D Y R LL GVA++ Sbjct: 3 KRYDRTLGRRAALQVLYESDILGTPVDKVVDEGVVPEEAALND--YARRLLLGVASHITD 60 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D + ++ + V++A+LRI ++E+ +VP V+INEA+ELAK FG +D++ Sbjct: 61 IDRQISKSSKNWAIDRMPLVDRALLRITVFEMQHVDEVPVAVSINEAVELAKDFGGDDTY 120 Query: 121 KFVNGVLDKAAPVIRPN 137 +FVNG+L + A + + Sbjct: 121 RFVNGILGRIARTMGED 137 >UniRef50_C6CU26 NusB antitermination factor n=3 Tax=Bacillales RepID=C6CU26_PAESJ Length = 153 Score = 138 bits (349), Expect = 5e-32, Method: Composition-based stats. Identities = 57/148 (38%), Positives = 83/148 (56%), Gaps = 14/148 (9%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVL----------YFRE 50 MK RR ARE AV +LY ++++ + + E ++ Y RE Sbjct: 1 MK---RRLAREIAVSSLYQLEMNEVTPMEAVDMLMEEARSENEIEAEFVENDQTDNYVRE 57 Query: 51 LLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIE 109 L+ GVA N A +D ++ YL+ ++ L +V++ +LR+A +E++ R+DVP K AINEAIE Sbjct: 58 LVNGVAENKAAIDERLQHYLTGWQVDRLSRVDRQILRLAYFEIAYRNDVPPKAAINEAIE 117 Query: 110 LAKSFGAEDSHKFVNGVLDKAAPVIRPN 137 LAK FG E+S KFVNGVL K Sbjct: 118 LAKHFGTEESGKFVNGVLGKLLKEREGE 145 >UniRef50_Q6AP93 N utilization substance protein B homolog n=1 Tax=Desulfotalea psychrophila RepID=NUSB_DESPS Length = 141 Score = 138 bits (349), Expect = 6e-32, Method: Composition-based stats. Identities = 45/134 (33%), Positives = 67/134 (50%), Gaps = 7/134 (5%) Query: 4 AARRRARECAVQALYSWQLSQNDIA------DVEYQFLAEQDVKDVDVLYFRELLAGVAT 57 + RR ARE A+Q LY + QF V Y L+AGV Sbjct: 2 SIRRFAREAALQFLYQDDFIPESADTPGELKERFEQFCEIYQVNKKGRTYALNLIAGVLA 61 Query: 58 NTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 + +D L++ + + ++ +LR+A +E++ DVP +VAINEA+E+AK F Sbjct: 62 DQEAIDRLIEEAAVNWRMSRISATDRNLLRVATFEINFCDDVPAEVAINEAVEIAKRFCG 121 Query: 117 EDSHKFVNGVLDKA 130 ++S KFVNGVLD Sbjct: 122 DESPKFVNGVLDAV 135 >UniRef50_B8DJF1 N utilization substance protein B homolog n=2 Tax=Desulfovibrio RepID=NUSB_DESVM Length = 165 Score = 138 bits (348), Expect = 6e-32, Method: Composition-based stats. Identities = 50/154 (32%), Positives = 71/154 (46%), Gaps = 17/154 (11%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQ--------DVKDVDV-------- 45 K RR R A Q LY + A + + D Sbjct: 6 KKPTRRSERALAFQVLYGLSFTPATSEGALRAAYAASPDVADRNAEDEKADRQAPATAPQ 65 Query: 46 LYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAI 104 Y E++ GV A LD + + +E +G+VE +LRIA+YE+ R DVP KVA+ Sbjct: 66 GYAWEVIHGVWKTQAELDEAVSGFSQNWRVERMGRVELTLLRIAVYEMLFRDDVPAKVAM 125 Query: 105 NEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 NEAIEL+K FG ++S F+NG+LD A + + Sbjct: 126 NEAIELSKQFGDDNSRGFINGILDAVARAVESGR 159 >UniRef50_B6WQ80 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WQ80_9DELT Length = 157 Score = 138 bits (348), Expect = 6e-32, Method: Composition-based stats. Identities = 51/143 (35%), Positives = 77/143 (53%), Gaps = 7/143 (4%) Query: 2 KPAARRRARECAVQALYSWQLSQN-DIADVEYQFLAEQDVKDVDVL-----YFRELLAGV 55 K A+RR R A Q LY + + DV FL D ++ + + +L+ GV Sbjct: 5 KSASRRGERAQAFQVLYGLSFADATSLEDVRRAFLQSPDHQESEEGELPSGFSWDLVQGV 64 Query: 56 ATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 + LD + + ++ +G+VE +LR+A+YEL R DVP KVAINEA+EL + F Sbjct: 65 WSRRDELDKTISRFSRNWRVDRMGRVELTLLRLAMYELLYRQDVPAKVAINEALELTRQF 124 Query: 115 GAEDSHKFVNGVLDKAAPVIRPN 137 G +++ FVNG+LD AA + Sbjct: 125 GEDNATSFVNGILDAAAKALEKG 147 >UniRef50_C8PMR7 Transcription antitermination factor NusB n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PMR7_9SPIO Length = 147 Score = 138 bits (348), Expect = 6e-32, Method: Composition-based stats. Identities = 45/132 (34%), Positives = 66/132 (50%), Gaps = 4/132 (3%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAE---QDVKDVDVLYFRELLAGVATNTAYL 62 RRR R A QALY+W D+ E +++ D D L+ + L G + + Sbjct: 5 RRRGRILAFQALYAWDAGSLSPDDLLPFPWVERTGKELHDEDFLFSQLLFLGAVEHIDEI 64 Query: 63 DGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 DGL+ L L V+KA+LR+ Y L + D ++ INEA+ +A+ +G +DS K Sbjct: 65 DGLIAKNLENWDFNRLKLVDKAILRLGTYSLLFQQDTDPRIVINEAVTIARIYGTDDSFK 124 Query: 122 FVNGVLDKAAPV 133 FVN VLD Sbjct: 125 FVNAVLDSIKRE 136 >UniRef50_B0K9D9 N utilization substance protein B homolog n=10 Tax=Thermoanaerobacterales RepID=NUSB_THEP3 Length = 140 Score = 138 bits (348), Expect = 7e-32, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 67/136 (49%), Gaps = 3/136 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 R ARE V+ LY + +S+ I+ + F E+D Y + G + +D Sbjct: 1 MNRTEAREWVVKMLYQYDVSRLPISKILENFYKEKD-PGEQKEYIENTVIGAIEHLEEID 59 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ Y L + +++ A+LR ++YE+ ++P ++INEA+E+AK + EDS F Sbjct: 60 KEIERYSQNWALNRMPKIDLAILRCSIYEMQY-GNIPVNISINEAVEIAKKYSTEDSPAF 118 Query: 123 VNGVLDKAAPVIRPNK 138 +NG+L + Sbjct: 119 INGLLGAFVRDEGLEE 134 >UniRef50_B1HQE5 Ribosomal RNA small subunit methyltransferase B n=5 Tax=Bacillaceae RepID=B1HQE5_LYSSC Length = 453 Score = 138 bits (348), Expect = 7e-32, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 55/124 (44%), Gaps = 3/124 (2%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R+ A+ L + +Q + + + ++ D EL G + LD ++P+ Sbjct: 14 RDAALSILLAVDKNQAYSNLLLNETIKRHKIEAKDRALLTELTYGTLQHKMTLDYYLEPF 73 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 + + + +LRI+LY++ + +P A+NEA+E+AK G VNG+L Sbjct: 74 IRGS---IDHWVRWLLRISLYQMQYLTRIPAHAAVNEAVEIAKRRGHRGIASTVNGILRS 130 Query: 130 AAPV 133 Sbjct: 131 VLRQ 134 >UniRef50_B2KE32 N utilization substance protein B homolog n=1 Tax=Elusimicrobium minutum Pei191 RepID=NUSB_ELUMP Length = 140 Score = 138 bits (348), Expect = 7e-32, Method: Composition-based stats. Identities = 43/139 (30%), Positives = 70/139 (50%), Gaps = 4/139 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADV-EYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 RR ARE A+Q LY + D+ EY+ + + + ++ G + A L Sbjct: 2 GNRRLAREHALQTLYYADTGKTQGKDINEYKEDFKDSLDAAGFEFCSGIIDGALEHQAEL 61 Query: 63 DGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSD-VPYKVAINEAIELAKSFGAEDSH 120 D ++ Y L + V++++LR+A YE+ + P I+EAIELAK F E+S Sbjct: 62 DKIISAYAKNWSLNRMSVVDRSILRMAAYEMLFSPENTPVAAVIDEAIELAKKFSTENSS 121 Query: 121 KFVNGVLDKAAPVIRPNKK 139 +F+NG+LD+ R N + Sbjct: 122 RFINGLLDQIKKE-RKNGQ 139 >UniRef50_A0LEK0 Sun protein n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LEK0_SYNFM Length = 449 Score = 137 bits (347), Expect = 8e-32, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 1/126 (0%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFL-AEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 AR A Q L + + L + +++ D EL+ GV LD + Sbjct: 4 ARVLAFQILLHMDRDASHPDRLIRGMLGRHERLEERDRALLTELVYGVLRWQGRLDWHID 63 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 E++ + +LR+ALY++ +P A+NEA+ +AK+ KFVNGVL Sbjct: 64 QLSRTRPEKIDPAVRILLRLALYQILMLDRIPDHAAVNEAVNMAKTTQPAYLVKFVNGVL 123 Query: 128 DKAAPV 133 +A Sbjct: 124 REALRR 129 >UniRef50_C9RZP8 Sun protein n=5 Tax=Bacillales RepID=C9RZP8_GEOSY Length = 444 Score = 137 bits (347), Expect = 9e-32, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 1/127 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 RE A+ L + + + + + + D E++ G LD + P+ Sbjct: 4 RELALDTLLAIEQKGAYSHLQLNEAIQKGRLDGRDAALLTEIVYGTVQRRDTLDYYLAPF 63 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 L R L + +LR+ LY++ VP + A+ EA+E+AK G VNGVL Sbjct: 64 L-RKARRLEPWVRVLLRLTLYQMVYLDRVPDRAAVFEAVEIAKRRGHRGIASLVNGVLRA 122 Query: 130 AAPVIRP 136 P Sbjct: 123 IGREGLP 129 >UniRef50_C5S6Y6 NusB antitermination factor n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S6Y6_CHRVI Length = 171 Score = 137 bits (347), Expect = 9e-32, Method: Composition-based stats. Identities = 49/153 (32%), Positives = 76/153 (49%), Gaps = 22/153 (14%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQ-----------------DVKDVDV 45 + R ++R A ALY W+L+ +D ++ L + ++ D Sbjct: 10 ISPRSQSRRYAALALYQWRLTGDDPMAIKRHLLDDPKWLDAVAASLNGVSDEDELAAEDR 69 Query: 46 -----LYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPY 100 ELL GV T+ +D + +L R + ++ VE A+LR+ YE+ ++P Sbjct: 70 FNFNVELLDELLNGVPTHIDAIDAQLDRFLDRPISQVDPVELAILRLGAYEILFSDNIPD 129 Query: 101 KVAINEAIELAKSFGAEDSHKFVNGVLDKAAPV 133 +VAINEA+EL K GA + HK+VNGVLDK A Sbjct: 130 RVAINEAVELTKLLGAHEGHKYVNGVLDKIARR 162 >UniRef50_Q5P3H4 N utilization substance protein B homolog n=9 Tax=Betaproteobacteria RepID=NUSB_AZOSE Length = 145 Score = 137 bits (347), Expect = 9e-32, Method: Composition-based stats. Identities = 54/128 (42%), Positives = 70/128 (54%) Query: 11 ECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL 70 E A+Q +Y W LS N + +E D F LL G N L P++ Sbjct: 12 EFALQGIYQWLLSANSMLLIEEHVSQVSGFDKADRELFISLLRGTLNNVDDLQAEFAPFI 71 Query: 71 SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 R + EL VE+A+L +A +EL D PY+V INEAIELAKS+G D H+FVNGVLDK Sbjct: 72 HRAVHELSPVERAILLLATHELKHNLDTPYRVIINEAIELAKSYGGTDGHRFVNGVLDKL 131 Query: 131 APVIRPNK 138 A +R + Sbjct: 132 ATQLRVTE 139 >UniRef50_C0WD86 SUN protein n=1 Tax=Acidaminococcus sp. D21 RepID=C0WD86_9FIRM Length = 445 Score = 137 bits (346), Expect = 1e-31, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 52/123 (42%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 RE A+ L + L + +D EL+ G T LD + Sbjct: 8 RELALLVLDEIYERGAYANLALNKALRGNGLSSLDRKLCTELVYGTVKTTGTLDWYLCRV 67 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 ++R ++ + +LR+ Y++ +P A+NE LA+ + E+S K VNGVL + Sbjct: 68 INRPFRKMAPRLRTILRMGAYQILYLERIPDSAAVNECANLARYYVNENSVKLVNGVLRQ 127 Query: 130 AAP 132 + Sbjct: 128 LSR 130 >UniRef50_A7HDY2 N utilization substance protein B homolog n=4 Tax=Anaeromyxobacter RepID=NUSB_ANADF Length = 143 Score = 137 bits (346), Expect = 1e-31, Method: Composition-based stats. Identities = 55/137 (40%), Positives = 81/137 (59%), Gaps = 3/137 (2%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDV-LYFRELLAGVATNTAYLD 63 R RARE A+QALY ++ I D +F + + +V + GVA + +D Sbjct: 4 KRTRARERALQALYQIDVAAEGIDDALSRFWKSFEPVEREVMEDAEGFVRGVAAHRRTID 63 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ + L+ + +V++ VLR+A+YEL R+DVP KVAINEAIEL K +G+E S F Sbjct: 64 DTIEGVSTNWRLDRMAKVDRNVLRLAVYELL-RTDVPVKVAINEAIELGKKYGSESSGAF 122 Query: 123 VNGVLDKAAPVIRPNKK 139 VNGVLDK A + P ++ Sbjct: 123 VNGVLDKVAAGLPPERR 139 >UniRef50_Q3ATI5 N utilization substance protein B homolog n=9 Tax=Chlorobiaceae RepID=NUSB_CHLCH Length = 169 Score = 137 bits (346), Expect = 1e-31, Method: Composition-based stats. Identities = 45/142 (31%), Positives = 75/142 (52%), Gaps = 4/142 (2%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDV-LYFRELLAGVATNT 59 MK RR+ RE +QALY+ +L + + L E+ + D + +F LL+ + + Sbjct: 1 MKTY-RRQIREKILQALYTVELRGITLDEAAGWLLTEEILADPNAMKFFNLLLSSIKAHR 59 Query: 60 AYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF-GAE 117 +D + + + ++K ++R+AL E+ D+P KV+INEAIE+AK F + Sbjct: 60 EEIDNYIAQQTFNWDMSRIAIIDKNIIRMALTEILYCEDIPPKVSINEAIEIAKKFNSTD 119 Query: 118 DSHKFVNGVLDKAAPVIRPNKK 139 S KFVNG+LD ++ K Sbjct: 120 KSSKFVNGILDAIFNKLKTEGK 141 >UniRef50_B9L730 Transcription antitermination factor NusB n=2 Tax=Nautiliaceae RepID=B9L730_NAUPA Length = 136 Score = 137 bits (345), Expect = 1e-31, Method: Composition-based stats. Identities = 40/133 (30%), Positives = 78/133 (58%), Gaps = 2/133 (1%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLM 66 ARE +Q LY+ ++ + + + L ++ VK + ++LL GV+ + +D ++ Sbjct: 5 THAREAVIQTLYAQEMGNDQAIEQFDEILKDKKVKGSKAEFAKKLLKGVSEHIDKIDEII 64 Query: 67 KPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 K +L E L +V+K +LR+ +YE+ +D PY++ I+EA+++AK+F + + F+NG Sbjct: 65 KNHLIDWDFERLDKVDKQILRVGIYEILY-TDTPYQIVIDEAVKIAKNFSEDKAKSFING 123 Query: 126 VLDKAAPVIRPNK 138 +LD+ A N+ Sbjct: 124 ILDRVAKEKMSNE 136 >UniRef50_Q6MNX9 N utilization substance protein B homolog n=1 Tax=Bdellovibrio bacteriovorus RepID=NUSB_BDEBA Length = 135 Score = 137 bits (345), Expect = 1e-31, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 71/134 (52%), Gaps = 3/134 (2%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK ARR+ARE A+Q L+ + + + + + + Y ++ GV +N Sbjct: 1 MKLTARRQARELALQVLFQTEFAPQISYQTFLEVFEQS-LDPEVITYADLIVTGVKSNKE 59 Query: 61 YLDGLM-KPYLSRLLEELGQVEKAVLRIALYELSKRSD-VPYKVAINEAIELAKSFGAED 118 +D + +E + +++ +LRIA+YE+ +D + +AINEA+E+AK +G D Sbjct: 60 AIDSKIQASSAHWKVERMATIDRNILRIAVYEMRFAADPIKENIAINEAVEIAKKYGTSD 119 Query: 119 SHKFVNGVLDKAAP 132 S FVNG+LD+ Sbjct: 120 SGSFVNGLLDQVGK 133 >UniRef50_P72943 Ribosomal RNA small subunit methyltransferase B n=4 Tax=Chroococcales RepID=RSMB_SYNY3 Length = 446 Score = 137 bits (345), Expect = 1e-31, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 55/130 (42%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR+ A L + + L + + D + EL+ GV LD L++ Sbjct: 4 ARQLAFLILRDINRRDSYTDVAIDRALQKHPLSPPDRRFCTELVYGVVRRQRTLDCLIEQ 63 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 R + + + ++++ LY+L VP A+N ++LAK+ G + K VNG+L Sbjct: 64 LGDRPIGKQPPDLRRIVQLGLYQLRYLDQVPASAAVNTGVDLAKANGLKGLSKVVNGMLR 123 Query: 129 KAAPVIRPNK 138 + K Sbjct: 124 RYQRAEEQGK 133 >UniRef50_B3QJK9 N utilization substance protein B homolog n=9 Tax=Alphaproteobacteria RepID=NUSB_RHOPT Length = 174 Score = 136 bits (344), Expect = 2e-31, Method: Composition-based stats. Identities = 42/147 (28%), Positives = 70/147 (47%), Gaps = 10/147 (6%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQF--------LAEQDVKDVDVLYFRELLA 53 K R AR AVQALY + I + +F + + + +FR+++A Sbjct: 24 KANRRGAARLAAVQALYQMDIGGAGINETFAEFESFWIGNEVEGEQYLPAEAAFFRDIVA 83 Query: 54 GVATNTAYLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELA 111 GV +D L+ L+ L + + +AV+R YEL R D+P +V ++E +++A Sbjct: 84 GVVREQKQIDPLIDDLLARGWPLARIDAILRAVMRAGAYELEHRKDIPARVVVSEYVDVA 143 Query: 112 KSFGAEDSHKFVNGVLDKAAPVIRPNK 138 +F +D VN VLD+ A R + Sbjct: 144 HAFVEKDETGMVNAVLDQIARRFRAEE 170 >UniRef50_A1WVG0 N utilization substance protein B homolog n=1 Tax=Halorhodospira halophila SL1 RepID=NUSB_HALHL Length = 155 Score = 136 bits (344), Expect = 2e-31, Method: Composition-based stats. Identities = 60/136 (44%), Positives = 89/136 (65%), Gaps = 3/136 (2%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R RAR VQALY + ++ D+E QFLA + D+DV YFREL+ GV A LD Sbjct: 10 RSRARSKLVQALYQYAVTGASAEDIERQFLA-AGLGDIDVAYFRELIYGVTDRAAELDEQ 68 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 + L R L +L VE+++LR+ +ELS+R +VPY+V I+E++ELA+ FGA+ SH+++NG Sbjct: 69 LSALLDRPLVQLDPVERSILRLGAFELSERLEVPYRVVIDESVELARRFGADQSHRYING 128 Query: 126 VLDKAAP--VIRPNKK 139 VLD+ +R ++ Sbjct: 129 VLDRFGATVALRAAER 144 >UniRef50_B7IXH3 N utilization substance protein B homolog n=82 Tax=Bacillales RepID=NUSB_BACC2 Length = 130 Score = 136 bits (344), Expect = 2e-31, Method: Composition-based stats. Identities = 44/129 (34%), Positives = 72/129 (55%), Gaps = 5/129 (3%) Query: 4 AARRRARECAVQALYSWQLSQN-DIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 RR ARE A+QALY ++ + L E + + + L+ G N + Sbjct: 1 MKRRTARERAMQALYQMDITGELEPKVAVENTLDEGEETN---EFLESLVVGFVENKEAI 57 Query: 63 DGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D ++ L + LE + V++++LR+A+YE+ ++P+ V INEAIE+AK+FG E+S + Sbjct: 58 DEAIRQNLKKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIEIAKTFGDEESRR 117 Query: 122 FVNGVLDKA 130 F+NGVL Sbjct: 118 FINGVLSNI 126 >UniRef50_D1U9R7 NusB antitermination factor n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U9R7_9DELT Length = 151 Score = 136 bits (343), Expect = 2e-31, Method: Composition-based stats. Identities = 48/143 (33%), Positives = 72/143 (50%), Gaps = 7/143 (4%) Query: 2 KPAARRRARECAVQALYSWQL----SQNDIADVEYQF-LAEQDVKDVDVLYFRELLAGVA 56 +P RR R A Q LY + DI + + E+ + + R L+ GV Sbjct: 9 RPGIRRVGRTLAFQVLYGTHFDDPKNPVDIGTAFERNPMVEEQESETAREFARALVLGVD 68 Query: 57 TNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG 115 N A +D + + + + +E ++LR++LYE+ +D+P K AINEAIEL+K FG Sbjct: 69 KNLARIDAAIGEHSQHWKFDRIAVIELSILRLSLYEMLF-TDIPVKAAINEAIELSKLFG 127 Query: 116 AEDSHKFVNGVLDKAAPVIRPNK 138 E S FVNG+LD A + K Sbjct: 128 DEKSRGFVNGILDGVARTMPSGK 150 >UniRef50_D0MK26 NusB antitermination factor n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MK26_RHOM4 Length = 165 Score = 136 bits (343), Expect = 3e-31, Method: Composition-based stats. Identities = 42/138 (30%), Positives = 70/138 (50%), Gaps = 2/138 (1%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDV-LYFRELLAGVATNTAYL 62 +RR RE +QALY++++ + V L D + + +L + Sbjct: 2 HSRREVRERVLQALYAYEVGHDTAEHVIDTVLRPALKDDREALRFATQLFLRTINYSEEA 61 Query: 63 DGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D L+ ++ L + +++ +LR+A+ EL D+P KV+INEAIELAK + E S + Sbjct: 62 DRLIADHVKNWDLTRIALIDRLLLRMAICELLAFEDIPPKVSINEAIELAKKYSTEKSGQ 121 Query: 122 FVNGVLDKAAPVIRPNKK 139 FVNGVLD ++ + Sbjct: 122 FVNGVLDAVVLDLQRQGR 139 >UniRef50_B9M341 Sun protein n=4 Tax=Geobacter RepID=B9M341_GEOSF Length = 448 Score = 135 bits (342), Expect = 3e-31, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 1/124 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R A + L ++ + + L+ ++ D EL+ GV A LD +++ + Sbjct: 7 RSAAFEILLRIDKERSYADILIDRELSAGALQGPDRGLLTELVYGVLRRQATLDHIIRRF 66 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 S+ LE L + +LRI LY++ VP A+NE ++LAK + F+N VL Sbjct: 67 SSQRLERLERSVLLLLRIGLYQMFYLDRVPVSAAVNETVKLAKVLV-PRASGFINAVLRN 125 Query: 130 AAPV 133 A Sbjct: 126 ADRE 129 >UniRef50_C5EIZ3 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=C5EIZ3_9FIRM Length = 447 Score = 135 bits (342), Expect = 3e-31, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 49/125 (39%), Gaps = 1/125 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNTAYLDGLMKP 68 R + L + + V Q L + + D + + G +D ++ Sbjct: 13 RGIVLDILSEVLDKGSFVHLVLNQALQKYQYLDKSDRAFITRVTEGTLEYLLQIDHIINK 72 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 Y +++ + + +LR+++Y++ VP NEA++LA FVNGVL Sbjct: 73 YSRTKTDKMKPLIRNLLRMSVYQILYMDRVPDSAVCNEAVKLAVKRRFTGLKGFVNGVLR 132 Query: 129 KAAPV 133 + Sbjct: 133 TISRE 137 >UniRef50_A8RWU3 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=A8RWU3_9CLOT Length = 455 Score = 135 bits (342), Expect = 3e-31, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 49/128 (38%), Gaps = 1/128 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNTAYLDGLMKP 68 RE + L + V Q L + + D + + G +D ++ Sbjct: 12 REIVLDILTEVLEQGAFVHLVLNQALQKYQYLGKADRSFITRAVEGTLEYLIQIDEVINR 71 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 Y + ++ +++LR+++Y++ VP NEA+++A FVNGVL Sbjct: 72 YSKTKINKMKPFIRSLLRMSVYQILYMDRVPDSAVCNEAVKMAVKRHFSGLKGFVNGVLR 131 Query: 129 KAAPVIRP 136 + Sbjct: 132 TISREKEN 139 >UniRef50_C6PE58 NusB/RsmB/TIM44 protein n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PE58_CLOTS Length = 199 Score = 135 bits (342), Expect = 3e-31, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 57/124 (45%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R A + LY + + V ++L ++DV+ + +E++ G LD ++ Sbjct: 4 RNIAFKILYEILVKKGYSNIVLNKYLNNDGIEDVEKSFIKEIVFGTIERKYTLDRIIDYC 63 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 ++ ++++ +L + L++L VP AINE++ L K + + KFVN VL Sbjct: 64 STKDIKKIDNKVLIILEMGLFQLMYMDKVPDYAAINESVNLTKEHVGKYASKFVNAVLRS 123 Query: 130 AAPV 133 Sbjct: 124 YLRN 127 >UniRef50_D0BMY2 Ribosomal RNA small subunit methyltransferase B n=2 Tax=Granulicatella RepID=D0BMY2_9LACT Length = 441 Score = 135 bits (342), Expect = 3e-31, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 2/133 (1%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 + R V L + Q+ + + +Q D EL G +D + Sbjct: 3 KVRNAVVDLLVQVEQDQSYSTISLKKVIEQQKWTAKDKGLLTELFYGTIQRKMTIDFYLA 62 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 PY+ + +++ K +LRI++Y++ +P AI EA+++AK G + KFVNGVL Sbjct: 63 PYIQKA-KKIQPWVKQLLRISIYQMVFLDKIPDHAAIFEAVQIAKKRGHQGIAKFVNGVL 121 Query: 128 DKAAP-VIRPNKK 139 +R ++ Sbjct: 122 RNFQRNDLRSFEE 134 >UniRef50_Q1NRI6 NusB antitermination factor n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NRI6_9DELT Length = 135 Score = 135 bits (342), Expect = 4e-31, Method: Composition-based stats. Identities = 47/131 (35%), Positives = 74/131 (56%), Gaps = 1/131 (0%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 M RR+ARE A+QALY ++ D + + Y RELLAG+ + Sbjct: 1 MAVGTRRKARELALQALYQGEMLGVGALDTLPSLCENFEASRRALPYARELLAGIEAHGE 60 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D + + L+ + +++ ++RIA+YE+ R +VP VAI+EA+ELAK +GA+DS Sbjct: 61 AIDAAIDAAAANWRLDRMSYIDRNLMRIAVYEMRWRDEVPAGVAIDEAVELAKRYGADDS 120 Query: 120 HKFVNGVLDKA 130 F+NG+LD Sbjct: 121 PAFINGILDAV 131 >UniRef50_C8WW78 Sun protein n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WW78_ALIAD Length = 451 Score = 135 bits (341), Expect = 4e-31, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 1/131 (0%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 R A QAL + + + LA V + D E+ G LD L+ Sbjct: 4 EGRRRAYQALIRVERDGAFLNAALQEALAGAGVDERDRALATEIAYGTLRRQITLDRLLS 63 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 P + R + +L + +LR+ Y+++ + VP A N+A+ELAK + VN VL Sbjct: 64 PLVRRPMSKLDPEVRVILRMGAYQMTWLNRVPAYAAANDAVELAKRHR-PQAAALVNAVL 122 Query: 128 DKAAPVIRPNK 138 + A + + Sbjct: 123 RRYAERAQDWE 133 >UniRef50_Q1MS16 N utilization substance protein B homolog n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=NUSB_LAWIP Length = 161 Score = 135 bits (341), Expect = 4e-31, Method: Composition-based stats. Identities = 46/150 (30%), Positives = 71/150 (47%), Gaps = 13/150 (8%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDV------------LYFR 49 K +RR R A Q LYS +Q + + + + + Sbjct: 5 KKHSRRIDRTKAFQVLYSLHFTQINTIETLKEIFLNLPNPLEERNTGIITELDTQISFSW 64 Query: 50 ELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAI 108 +L+ GV N LD ++ + ++ LG++E +LRIA +E+ DVP KV++NEA+ Sbjct: 65 QLVEGVWRNVTRLDKIISQFSQNWRVDRLGKIELTLLRIATFEMYYCPDVPPKVSLNEAL 124 Query: 109 ELAKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 ELA FG E + KF+NG+LD I K Sbjct: 125 ELATCFGDEKARKFINGILDAIIKAIETEK 154 >UniRef50_C0ZC03 N utilization substance protein B n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZC03_BREBN Length = 137 Score = 135 bits (341), Expect = 4e-31, Method: Composition-based stats. Identities = 50/133 (37%), Positives = 71/133 (53%), Gaps = 4/133 (3%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 M RR ARE VQ L+ +++ + D + E + + Y R LL GV N Sbjct: 1 MNGMKRRTAREKVVQCLFQIDMAEVPLTDAVALVMEE---SEENAQYLRYLLDGVLKNLT 57 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D +K YL LE + V++A+LR+A YE+ D P KV +NEAIE+AK F E S Sbjct: 58 EIDAEIKKYLRGWQLERIANVDRAILRLAFYEIMFEQDTPDKVVMNEAIEVAKLFSDEQS 117 Query: 120 HKFVNGVLDKAAP 132 H+++NGVL Sbjct: 118 HRYINGVLSSFLQ 130 >UniRef50_C4XHY8 N utilization substance protein B homolog n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XHY8_DESMR Length = 159 Score = 135 bits (341), Expect = 4e-31, Method: Composition-based stats. Identities = 40/141 (28%), Positives = 70/141 (49%), Gaps = 7/141 (4%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAE------QDVKDVDVLYFRELLAGVATN 58 +RR+AR+ A + LY + + D + EL+ GV N Sbjct: 12 SRRKARKQAFEFLYGLSFEPAADERSLLRLFKRCPHDVAEGEDDAGHEFAWELVLGVWRN 71 Query: 59 TAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 +D + + + + +VE +LR+A++E+ R D+P +V++NEAIEL+K +G E Sbjct: 72 QRDIDATIVRFSKNWKISRIAKVELTILRLAVHEILSRPDIPLRVSLNEAIELSKRYGDE 131 Query: 118 DSHKFVNGVLDKAAPVIRPNK 138 +S F+NG+LD A + + Sbjct: 132 NSRNFINGILDALAKAVDSGE 152 >UniRef50_Q2YYB7 N utilization substance protein B homolog n=59 Tax=Staphylococcus RepID=NUSB_STAAB Length = 129 Score = 135 bits (340), Expect = 5e-31, Method: Composition-based stats. Identities = 42/130 (32%), Positives = 69/130 (53%), Gaps = 2/130 (1%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +R+ +R A Q L+ ++ +D+ E + D+D + L++GV + LD Sbjct: 1 MSRKESRVQAFQTLFQLEMKDSDLTINEAISFIKDGNPDLDFEFIHWLVSGVKDHEPVLD 60 Query: 64 GLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + PYL + L + ++ +LR+A YE+ SD P KV +NEA+EL K F +D +KF Sbjct: 61 ETISPYLKDWTIARLLKTDRIILRMATYEILH-SDTPAKVVMNEAVELTKQFSDDDHYKF 119 Query: 123 VNGVLDKAAP 132 +NGVL Sbjct: 120 INGVLSNIKK 129 >UniRef50_A4TBX3 N utilization substance protein B homolog n=18 Tax=Actinomycetales RepID=NUSB_MYCGI Length = 164 Score = 135 bits (340), Expect = 6e-31, Method: Composition-based stats. Identities = 47/130 (36%), Positives = 70/130 (53%), Gaps = 5/130 (3%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVL----YFRELLAGVATNTAY 61 R +AR+ AV L+ + A+V A D D+ Y + GV + A+ Sbjct: 10 RHQARKRAVDLLFEAEARGITAAEVAEARNALADNGADDIAPLNPYTVTVARGVTDHAAH 69 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D L+ +L L+ L V++AVLR+A++EL DVP VA++EA+ELAK +DS Sbjct: 70 IDDLISAHLQGWTLDRLPAVDRAVLRVAVWELLHAVDVPEPVAVDEAVELAKQLSTDDSP 129 Query: 121 KFVNGVLDKA 130 FVNGVL + Sbjct: 130 GFVNGVLGQV 139 >UniRef50_C6R1D5 Ribosomal RNA small subunit methyltransferase B n=1 Tax=Rothia mucilaginosa ATCC 25296 RepID=C6R1D5_9MICC Length = 659 Score = 135 bits (340), Expect = 6e-31, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 56/139 (40%), Gaps = 5/139 (3%) Query: 3 PAARRR----ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATN 58 P+AR R AR L S S V + + + D + EL G + Sbjct: 155 PSARSRTADTARATVFDVLRSVAESDAYANLVLPKAIRSHRLDHRDAGFATELTYGTLRH 214 Query: 59 TAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 D ++ + R +E++G VLR+ +++L VP A+N+++ LA+ Sbjct: 215 QGTYDAILSRCVDRPIEKVGTTTLIVLRMGVHQLLNM-RVPAHAALNQSVSLAREKIGAG 273 Query: 119 SHKFVNGVLDKAAPVIRPN 137 F+N VL + + Sbjct: 274 PASFINAVLRRVSERTPEE 292 >UniRef50_UPI0001C335A0 ribosomal RNA small subunit methyltransferase RsmB n=3 Tax=Cyanobacteria RepID=UPI0001C335A0 Length = 453 Score = 135 bits (340), Expect = 6e-31, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 57/137 (41%), Gaps = 3/137 (2%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK + AR+ ++ L + + I ++ D EL+ G+ Sbjct: 1 MKVSN---ARQLVLKILREIDKNNSFINISLDSAFKHNELSRQDRGLCTELVYGIIRCQR 57 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD L+ ++ ++ V + +L I LY+L VP A+N +++LAK+ Sbjct: 58 TLDSLIDQLGNKKSQKQSPVLRRILHIGLYQLLYLDHVPLSAAVNTSVDLAKNNNLNVLS 117 Query: 121 KFVNGVLDKAAPVIRPN 137 K VN +L + V + Sbjct: 118 KVVNAILREYIRVKKKE 134 >UniRef50_C4V0R0 rRNA SAM-dependent methyltransferase RmsB n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V0R0_9FIRM Length = 449 Score = 134 bits (339), Expect = 7e-31, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 1/126 (0%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 R RE A+Q L + L + + D + EL+ G LD +++ Sbjct: 12 RIREQAMQVLLRIHSEGAYANVALAEELRIAQMTERDRRFLTELVYGTVKAGETLDYMIR 71 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 Y++ L++ + +LR+ Y++ +P + A+ELAK G + + FVNGVL Sbjct: 72 RYVA-DLKKAQPPIRELLRLGFYQIFFMDKIPSSAVCHTAVELAKKHGGKGAASFVNGVL 130 Query: 128 DKAAPV 133 A Sbjct: 131 RTALRE 136 >UniRef50_B8FHH2 Sun protein n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FHH2_DESAA Length = 455 Score = 134 bits (339), Expect = 7e-31, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 62/137 (45%), Gaps = 2/137 (1%) Query: 1 MKP-AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATN 58 MKP A + ++R A + L + + V + L ++ + D L+ GV N Sbjct: 1 MKPPAGKDKSRITAARILDRLESGDQVLDVVLDRALDKEPGLTRKDRALVMALVYGVLRN 60 Query: 59 TAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 +D ++ + L+++ +LR+ +++L VP +A++ ++E+AK Sbjct: 61 RGRIDWIISSFSKTKLKKIQPEILNILRMGVFQLLFLDRVPPALAVDSSVEMAKKAAPVF 120 Query: 119 SHKFVNGVLDKAAPVIR 135 KFVNG+L R Sbjct: 121 VSKFVNGLLRNVERKGR 137 >UniRef50_C1QBG1 Transcription antitermination factor NusB n=1 Tax=Brachyspira murdochii DSM 12563 RepID=C1QBG1_9SPIR Length = 187 Score = 134 bits (339), Expect = 8e-31, Method: Composition-based stats. Identities = 43/132 (32%), Positives = 78/132 (59%), Gaps = 2/132 (1%) Query: 4 AARRRARECAVQALYSWQLSQNDIADV-EYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 ARR+AR AV +LYS+++++ I+ F ++ + + + R L+ G N + Sbjct: 53 GARRQARIYAVMSLYSYEINERKISINNILDFDYDKKIPENIFAFTRNLVEGTIKNLERI 112 Query: 63 DGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D L++ Y + ++ + V+K+++R+++Y L D+P V I+EA+E+AK F +DS+K Sbjct: 113 DSLIEKYSNNWDIKRIQYVDKSIIRMSIYSLIFLKDIPKSVVIDEAVEIAKIFSDKDSYK 172 Query: 122 FVNGVLDKAAPV 133 FVNG+LD Sbjct: 173 FVNGILDGIQEE 184 >UniRef50_Q03RR0 N utilization substance protein B homolog n=23 Tax=Lactobacillus RepID=NUSB_LACBA Length = 142 Score = 134 bits (338), Expect = 9e-31, Method: Composition-based stats. Identities = 44/129 (34%), Positives = 67/129 (51%), Gaps = 4/129 (3%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKD--VDVLYFRELLAGVATNTA 60 R + RE A Q L++ + D YQ + D Y L+ GV + + Sbjct: 2 TLTRHQIRERAFQMLFALNANPEADHDALYQRVLTDDPNQLVPVPDYLATLVNGVLAHQS 61 Query: 61 YLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 LD + YLS L+ + + + +LR+A YE+ DVP +VA+NEA+ELAK+F + Sbjct: 62 ELDAQIDQYLSTGWQLKRIAKTDLVILRMAFYEIEHVDDVPNRVAVNEALELAKNFSDDR 121 Query: 119 SHKFVNGVL 127 S +F+NGVL Sbjct: 122 SRRFINGVL 130 >UniRef50_C9LLK5 Ribosomal RNA small subunit methyltransferase B n=1 Tax=Dialister invisus DSM 15470 RepID=C9LLK5_9FIRM Length = 454 Score = 134 bits (338), Expect = 9e-31, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 50/125 (40%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR A +ALY L +K + EL+ GV Y ++ Sbjct: 12 ARTLAFEALYEIFEKNAYANLTIQSILRWCPLKKEERHLLTELIYGVCRKYNYCLWMISL 71 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 R + ++ + +L + +Y++ +P A+NE +++AK + KF+NGVL Sbjct: 72 ISDRPMFKIHPAVRILLALGIYQIVFLDRIPESAAVNETVKIAKKVTHIGNVKFINGVLR 131 Query: 129 KAAPV 133 Sbjct: 132 NFLRR 136 >UniRef50_B9LDT2 N utilization substance protein B homolog n=6 Tax=Chloroflexi (class) RepID=NUSB_CHLSY Length = 151 Score = 134 bits (338), Expect = 1e-30, Method: Composition-based stats. Identities = 45/138 (32%), Positives = 74/138 (53%), Gaps = 3/138 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 + R R R A+Q L+ + + I V + L ++ + + R L+ G + +YLD Sbjct: 8 SQRHRVRIAALQILFEVDETDHAIDQVLERRLTDEPMSQESAEFLRRLVFGAWEHRSYLD 67 Query: 64 GLMKPYL-SRLLEELGQVEKAVLRIALYELSKRS--DVPYKVAINEAIELAKSFGAEDSH 120 +++ + + ++ V+KAVLRIAL+EL P K INEA+ELAK FG+++S Sbjct: 68 RIIEEAAPNWPVAQMPGVDKAVLRIALFELLIDDVERTPIKAVINEAVELAKQFGSDNSS 127 Query: 121 KFVNGVLDKAAPVIRPNK 138 +FVNGVL ++ Sbjct: 128 RFVNGVLGTVVTRYLADR 145 >UniRef50_C6BYC6 NusB antitermination factor n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BYC6_DESAD Length = 155 Score = 134 bits (338), Expect = 1e-30, Method: Composition-based stats. Identities = 52/139 (37%), Positives = 71/139 (51%), Gaps = 6/139 (4%) Query: 6 RRRARECAVQALYSWQL----SQNDIADVEYQFLAEQDVKDVD-VLYFRELLAGVATNTA 60 RR+ R A Q LY + Q A + D +L+ RELL G+ Sbjct: 10 RRKGRVLAFQVLYGLSFVPPHGGWTTERIYNQSPAVIRETEEDLILFARELLIGIWNAQE 69 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 LD ++ Y +E + +VE A+LR+A+YEL + D+P KV INE IELAK FG +S Sbjct: 70 ELDEVIGRYSKHWKIERIAKVELAILRLAVYELVHKPDIPLKVGINEGIELAKKFGDGNS 129 Query: 120 HKFVNGVLDKAAPVIRPNK 138 F+NG+LD A I K Sbjct: 130 RNFINGILDAVARDIDTGK 148 >UniRef50_C0EY63 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0EY63_9FIRM Length = 466 Score = 133 bits (337), Expect = 1e-30, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 55/137 (40%), Gaps = 2/137 (1%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDV-DVLYFRELLAGVATNT 59 M+ R R A+ L + ++ + L + D ++ L GV Sbjct: 14 MQMEKRTDMRAEALDTLIDIERNKKLSHIAIGETLMRNQFEKKADRAFYTRLCEGVTERK 73 Query: 60 AYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 YLD ++ Y +++ + +++LR+ Y++ DV A +EA+ LAK G Sbjct: 74 IYLDYILDHYSKTPMKKCKPLIRSLLRMGAYQILFM-DVRDAAACSEAVSLAKKRGFGRL 132 Query: 120 HKFVNGVLDKAAPVIRP 136 FVNGVL Sbjct: 133 SGFVNGVLRTLVREKEN 149 >UniRef50_B2A2K5 Sun protein n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A2K5_NATTJ Length = 462 Score = 133 bits (337), Expect = 1e-30, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 50/133 (37%), Gaps = 3/133 (2%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK + +RE A A Q V Q L + D+ D + G Sbjct: 1 MKIKS---SRELAFVAYTRIIQDQAYSNLVLNQLLGKTDLLAQDKALASRITYGTLQWQG 57 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D +K R L +L +LR+ Y++ VP ++NE +++A + Sbjct: 58 LIDYYLKTLSHRPLSKLSNKALFLLRMGAYQILFLDRVPPSASVNETVKVAHRRTHKGIA 117 Query: 121 KFVNGVLDKAAPV 133 FVNG+L Sbjct: 118 NFVNGILRNLIRK 130 >UniRef50_C0W1K3 16S rRNA m(5)C 967 methyltransferase n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0W1K3_9ACTO Length = 487 Score = 133 bits (337), Expect = 1e-30, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 1/131 (0%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 K A +AR A + L + V + + E ++ D + EL+ G N A Sbjct: 23 KQARVSKARTVAFETLLKVDVEDAYANIVLPKAITEANLDSRDASFATELVYGTLRNLAR 82 Query: 62 LDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 +D +++ + + + +L +A+LR+ +++ VP A+ E++EL K K Sbjct: 83 VDWVIEQCMPKKIADLDPEVRAILRLTAHQILHL-RVPDHAAVAESVELTKHVAGFGVEK 141 Query: 122 FVNGVLDKAAP 132 FVNGV Sbjct: 142 FVNGVARAMVE 152 >UniRef50_A8ZUK3 Sun protein n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZUK3_DESOH Length = 468 Score = 133 bits (337), Expect = 1e-30, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 3/134 (2%) Query: 2 KPAARRRA--RECAVQALYSWQLSQNDIADVEYQFLAEQDVKD-VDVLYFRELLAGVATN 58 +P A R++ R A++ L + + + V + LA + D L+ GV Sbjct: 12 RPTAARKSDPRAVALRILTALEKGHRTLDQVADEALARVSFPEKRDRALVTTLVYGVLRW 71 Query: 59 TAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 LD + + L+ + +LR+ L++L +P AIN +++L+K G Sbjct: 72 RNTLDYTIVHFSRTPLQRMDPAVLNILRLGLFQLRFLDRIPDFAAINSSVDLSKQAGLGR 131 Query: 119 SHKFVNGVLDKAAP 132 FVNG+L + Sbjct: 132 LSGFVNGLLRSSTR 145 >UniRef50_Q0TPD3 N utilization substance protein B homolog n=10 Tax=Clostridium RepID=NUSB_CLOP1 Length = 135 Score = 133 bits (337), Expect = 1e-30, Method: Composition-based stats. Identities = 44/135 (32%), Positives = 71/135 (52%), Gaps = 3/135 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDV--KDVDVLYFRELLAGVATNTAY 61 R ++RE +Q Y +++ + F+ +D+ D+D+ Y + L G+ N Sbjct: 1 MNRVKSREYLLQLAYQMEITSETALETFNSFMENEDISKDDLDLAYIKSGLLGIEENKEK 60 Query: 62 LDGLM-KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD L+ + L + +V ++LRI+ YE+ DVP KV+INEAIEL K + S Sbjct: 61 LDSLIESQLVKWKLNRISKVNLSILRISTYEILFAEDVPGKVSINEAIELCKKYSDNKSV 120 Query: 121 KFVNGVLDKAAPVIR 135 F+NGVLDK ++ Sbjct: 121 SFINGVLDKVYKNMQ 135 >UniRef50_B9XNZ3 NusB antitermination factor n=1 Tax=bacterium Ellin514 RepID=B9XNZ3_9BACT Length = 185 Score = 133 bits (337), Expect = 1e-30, Method: Composition-based stats. Identities = 43/157 (27%), Positives = 69/157 (43%), Gaps = 26/157 (16%) Query: 4 AARRRARECAVQALYSWQLSQ-NDIADVEYQFLAEQD----------------------- 39 RR ARE AVQ L+ L+ + + F Q Sbjct: 21 GKRREARERAVQFLFQHDLNPPEKLEEALNHFWDSQRPAALAEDKGGATWGQKVELPAPT 80 Query: 40 -VKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSD 97 + ++ L+ G + D +K Y L + V++ +LR+A++E+ R D Sbjct: 81 AEEAAVRIFADPLIRGALEHRDEADAQIKKYAENWDLHRIAAVDRNILRLAIFEMLHRED 140 Query: 98 VPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVI 134 +P V+INEA+++AK F +S KFVNG+LDK + Sbjct: 141 IPPVVSINEAVDIAKKFSTYESGKFVNGILDKIKGEL 177 >UniRef50_B8DTW1 N utilization substance protein B homolog n=16 Tax=Actinobacteridae RepID=NUSB_BIFA0 Length = 154 Score = 133 bits (337), Expect = 1e-30, Method: Composition-based stats. Identities = 34/129 (26%), Positives = 64/129 (49%), Gaps = 1/129 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 AR AR A+ LY D + + +A+ + Y E++ GV + +D Sbjct: 1 MARSTARRRALNTLYEADEKGQDFLSLLDERIAQPGAQTPLPEYAIEIVRGVDEHRRDID 60 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + + + ++ + +++ +LRIA +E+ DVP KVAI+EA+ L+K+ + + F Sbjct: 61 SQLNTHSTGWKVKRMHAIDRNILRIATWEILYNDDVPDKVAIDEALNLSKTLSDDAAPSF 120 Query: 123 VNGVLDKAA 131 ++GVL Sbjct: 121 IHGVLSAIV 129 >UniRef50_B8ZUK7 N utilization substance protein B homolog n=16 Tax=Actinomycetales RepID=NUSB_MYCLB Length = 190 Score = 133 bits (336), Expect = 1e-30, Method: Composition-based stats. Identities = 43/130 (33%), Positives = 71/130 (54%), Gaps = 6/130 (4%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVL----YFRELLAGVATNTAY 61 R +AR+ AV L+ + ++ + + +DV Y + GV+ +TA Sbjct: 8 RHQARKRAVDLLFEAEARDLSPLEII-EVRSALAKSKLDVAPLHPYTVVVAQGVSEHTAR 66 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D L+ +L L+ L V++A+LR++++EL DVP VA++EA+ELAK +DS Sbjct: 67 IDELIISHLQGWKLDRLPAVDRAILRVSIWELLYADDVPEPVAVDEAVELAKELSTDDSP 126 Query: 121 KFVNGVLDKA 130 FVNG+L K Sbjct: 127 GFVNGLLGKV 136 >UniRef50_B7DR17 NusB antitermination factor n=1 Tax=Alicyclobacillus acidocaldarius LAA1 RepID=B7DR17_9BACL Length = 165 Score = 133 bits (336), Expect = 2e-30, Method: Composition-based stats. Identities = 50/139 (35%), Positives = 76/139 (54%), Gaps = 3/139 (2%) Query: 4 AARRRARECAVQALYSWQL-SQNDIADVEYQFLAEQDVK-DVDVLYFRELLAGVATNTAY 61 R ARECA+QAL + A+ LAE+ + D Y EL+ G + Sbjct: 1 MTRHEARECALQALCVLDVQRDLGSAEAIASVLAERGLDAGGDWAYIEELVDGTRRHLGE 60 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D L+ ++ R E +G+VE+ VLR+A YEL ++P AI+EA+++AK+F E S Sbjct: 61 IDELLARHMERWSPERIGRVERNVLRLATYELLFEPELPIASAIDEAVQIAKTFATEQSG 120 Query: 121 KFVNGVLDKAAPVIRPNKK 139 +FVNGVL K P + ++ Sbjct: 121 RFVNGVLAKLLPAVADRRR 139 >UniRef50_D2NSI1 tRNA and rRNA cytosine-C5-methylase n=2 Tax=Micrococcaceae RepID=D2NSI1_9MICC Length = 697 Score = 133 bits (336), Expect = 2e-30, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 5/139 (3%) Query: 3 PAARRR----ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATN 58 P+AR R AR + L S S V + + + D + EL G + Sbjct: 193 PSARSRTADTARATVFEVLRSVAESDAYANLVLPKAIRSHRLDHRDAGFATELTYGTLRH 252 Query: 59 TAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 D +++ + R LE++G VLR+ +++L VP A+N+++ LA+ Sbjct: 253 QGTYDAILRHCVDRPLEKVGTTTLIVLRMGVHQLLNM-RVPAHAALNQSVSLAREKIGAG 311 Query: 119 SHKFVNGVLDKAAPVIRPN 137 F+N VL + + Sbjct: 312 PASFINAVLRRVSERTPEE 330 >UniRef50_B3DQ30 N utilization substance protein B homolog n=7 Tax=Actinobacteridae RepID=NUSB_BIFLD Length = 190 Score = 133 bits (336), Expect = 2e-30, Method: Composition-based stats. Identities = 40/128 (31%), Positives = 67/128 (52%), Gaps = 1/128 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 AR AR+ A+ LY DI + + +A + Y E++ GVA + +D Sbjct: 1 MARSTARKRALNTLYEADEKSQDILSLLDERIAHPGAQTPLPDYAIEIVKGVAEHRRQID 60 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + + + + +G V++ +LRIA +E+ DVP KVAI+EA+ LAK+ +DS F Sbjct: 61 MTLDEHSTGWKVRRMGVVDRNILRIAAWEILFTDDVPDKVAIDEALALAKTLCDDDSPAF 120 Query: 123 VNGVLDKA 130 ++G+L Sbjct: 121 IHGLLSAV 128 >UniRef50_A8VXB3 Acetyl-CoA carboxylase, biotin carboxyl carrier protein n=2 Tax=Bacillus RepID=A8VXB3_9BACI Length = 134 Score = 133 bits (336), Expect = 2e-30, Method: Composition-based stats. Identities = 54/140 (38%), Positives = 76/140 (54%), Gaps = 8/140 (5%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK RR AR A+QALY +++ + + L E + D Y L+ V Sbjct: 1 MK---RRVARIKAIQALYQVEMTGVNPEEAIKTVLEENESMDP---YLLTLVERVLEEMD 54 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF-GAED 118 LD ++ + L L +V++A++RIA+YE+ DVP VAINEAI+LA+ F G E+ Sbjct: 55 ELDIKIQDSMDNWQLSRLARVDRAIMRIAMYEMIHSDDVPVSVAINEAIDLARGFSGDEE 114 Query: 119 SHKFVNGVLDKAAPVIRPNK 138 S KFVNGVL AA + N Sbjct: 115 SGKFVNGVLSNAAKKLEVND 134 >UniRef50_B2A534 N utilization substance protein B homolog n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=NUSB_NATTJ Length = 139 Score = 133 bits (336), Expect = 2e-30, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 79/139 (56%), Gaps = 4/139 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFL---AEQDVKDVDVLYFRELLAGVATNTA 60 +RR ARE +++ ++ + + + +V + + A++++ + Y +++ +N Sbjct: 1 MSRRTAREASMKLVFQMAFNDDHVDEVGAEDILAQAKEELNYNNYQYIETVVSRTESNLQ 60 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D ++ + ++ L +V+ ++LR+A+ E+ D+P +V+INEA+ELAK F + + Sbjct: 61 KIDEYIEKFSENWKIDRLSKVDLSILRLAISEILFFDDIPTRVSINEAVELAKKFSTDKA 120 Query: 120 HKFVNGVLDKAAPVIRPNK 138 ++NG+LD+ A + + Sbjct: 121 SGYINGILDQVANQLNKAR 139 >UniRef50_C9L6W4 Ribosomal RNA small subunit methyltransferase B n=12 Tax=Clostridiales RepID=C9L6W4_RUMHA Length = 454 Score = 133 bits (335), Expect = 2e-30, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 1/125 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNTAYLDGLMKP 68 RE + L V L + ++ + + + G LD ++ Sbjct: 8 RELVLGILLEINKEGQHSHLVIRSTLEKYQYLEKQERAFLTRVCEGTLEYKLRLDYILDQ 67 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 Y S +E++ V + +LR ++Y+L +VP +EA++LA+ G + FVNGVL Sbjct: 68 YSSVPVEKMKPVIREILRSSVYQLLYMDNVPDSAVCDEAVKLARKKGFYNLTGFVNGVLR 127 Query: 129 KAAPV 133 K A Sbjct: 128 KVARE 132 >UniRef50_C0R001 Transcription antitermination protein NusB n=1 Tax=Brachyspira hyodysenteriae WA1 RepID=C0R001_BRAHW Length = 181 Score = 132 bits (334), Expect = 3e-30, Method: Composition-based stats. Identities = 42/133 (31%), Positives = 78/133 (58%), Gaps = 4/133 (3%) Query: 4 AARRRARECAVQALYSWQLSQ--NDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 ARR+AR AV +LYS++++ I ++ F ++ + + + R L+ G N Sbjct: 47 GARRQARIYAVMSLYSYEINDRKETINEIL-SFDYDKKIPENIFEFTRTLVEGTINNLER 105 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D L++ Y + ++ + V+K+++R+++Y L D+P V I+EA+E++K F +DS+ Sbjct: 106 IDNLIEKYSNNWDIKRIQYVDKSIIRMSIYSLIFLKDIPKSVVIDEAVEISKIFSDKDSY 165 Query: 121 KFVNGVLDKAAPV 133 KFVNG+LD Sbjct: 166 KFVNGILDGIQEK 178 >UniRef50_B8H535 N utilization substance protein B homolog n=4 Tax=Caulobacteraceae RepID=NUSB_CAUCN Length = 149 Score = 132 bits (334), Expect = 3e-30, Method: Composition-based stats. Identities = 52/144 (36%), Positives = 71/144 (49%), Gaps = 10/144 (6%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQF--------LAEQDVKDVDVLYFRELLA 53 + R AR AVQALY ++S + V +F + + + D +F +L Sbjct: 5 RIQPRSVARLAAVQALYQMEVSGAGVDSVIREFGEHRFDRDVEGEQLAAADETFFADLAR 64 Query: 54 GVATNTAYLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELA 111 GV TN A +D + L+ LE L +AVLR +EL RSDVP +V INE +E+A Sbjct: 65 GVVTNQAKIDQGIVKRLASGWRLERLDATARAVLRAGAFELMYRSDVPTEVVINEYVEIA 124 Query: 112 KSFGAEDSHKFVNGVLDKAAPVIR 135 KSF F+NG LD A R Sbjct: 125 KSFFEGPESGFINGALDAIARDAR 148 >UniRef50_Q1AW09 N utilization substance protein B homolog n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=NUSB_RUBXD Length = 139 Score = 132 bits (334), Expect = 3e-30, Method: Composition-based stats. Identities = 39/126 (30%), Positives = 65/126 (51%), Gaps = 4/126 (3%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +RR AR+ A LY ++ + + ++ A + + Y ++ GV LD Sbjct: 1 MSRRTARKQAFFILYQSDVTGSPAEPLIGRWRAYRGELE---DYAERVVRGVERERERLD 57 Query: 64 GLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ + + V++ +LR+ALYE+ DVP +VA+NEA+ELAK F E++ F Sbjct: 58 AVLDGVSEGWPVWRMSAVDRTILRLALYEMLHVQDVPPEVAVNEAVELAKGFSGEEAPSF 117 Query: 123 VNGVLD 128 V GVL Sbjct: 118 VGGVLR 123 >UniRef50_D2B6P7 Transcription antitermination factor NusB n=3 Tax=Actinomycetales RepID=D2B6P7_STRRD Length = 136 Score = 132 bits (334), Expect = 3e-30, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 4/134 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +AR +AR A+ L+ + D V + L + Y ++ GV + A +D Sbjct: 2 SARGKARRRALDILFEAEARSQDPLSVLAERLERAE--PPVNEYTATIVEGVCRHRARID 59 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 L+ Y L+ + V++ +LR YEL DVP V I+E + LA ++S +F Sbjct: 60 ELITTYAEGWTLDRMPAVDRNLLRGGTYELLWMPDVPEGVVISEWVSLASELSTDESPQF 119 Query: 123 VNGVLDKAAPVIRP 136 VNG++ + ++P Sbjct: 120 VNGLMARF-KQLKP 132 >UniRef50_UPI00016C01E8 sun protein n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C01E8 Length = 229 Score = 132 bits (333), Expect = 4e-30, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 2/123 (1%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 RE V AL + + V + L ++ D E+ G +D ++ Sbjct: 5 REIVVDALVKVEKEGAYLQLVLKKDLE--ILESRDRGLATEIATGTLKYQIAIDYIINQV 62 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 S + ++ + ++RI++Y+L VP AINEA++LAKS G KFVNGVL Sbjct: 63 SSIKVSKMKPFIRNLMRISVYQLRYLDKVPAHAAINEAVKLAKSRGFAGLSKFVNGVLRS 122 Query: 130 AAP 132 Sbjct: 123 IER 125 >UniRef50_A9KM96 Sun protein n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KM96_CLOPH Length = 453 Score = 132 bits (333), Expect = 4e-30, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 1/129 (0%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQ-DVKDVDVLYFRELLAGVATNTAYLDGLMK 67 ARE + + V + L D+ D + L GV LD ++ Sbjct: 3 AREIVLTMCLKINEDKLPSHVVINETLKNYKDLSKQDRAFISRLCLGVLEQKLRLDYDLE 62 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 + ++++ V + VLRIA Y++ +P A +EA++L K G FVNG+L Sbjct: 63 RFSKIKVKKMKPVIRNVLRIAAYQIEFMEQIPDSAACDEAVKLVKKRGLGGLSGFVNGIL 122 Query: 128 DKAAPVIRP 136 + + Sbjct: 123 RNLSREFQK 131 >UniRef50_A0JX79 N utilization substance protein B homolog n=3 Tax=Actinomycetales RepID=NUSB_ARTS2 Length = 136 Score = 132 bits (333), Expect = 4e-30, Method: Composition-based stats. Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 3/130 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +AR +AR A+ L+ + DV + + Y E++ GV ++ A +D Sbjct: 2 SARGKARNRALDVLFEAEQRSLSAFDVLRSRREKT--DQIVNPYTLEIVEGVVSHQAAID 59 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ Y LE + V++ +LRI +EL DVP VA++EA+ LAK+ ++S F Sbjct: 60 EFLETYSQGWTLERMPSVDRIILRIGTWELLYNDDVPDGVAVSEAVALAKTLSTDESPSF 119 Query: 123 VNGVLDKAAP 132 +NG+L + Sbjct: 120 INGLLGRLQQ 129 >UniRef50_B6GCG9 Putative uncharacterized protein n=2 Tax=Collinsella RepID=B6GCG9_9ACTN Length = 216 Score = 132 bits (333), Expect = 4e-30, Method: Composition-based stats. Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 5/131 (3%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R AR A+Q L+ ++ + DV D Y ++ GV N +D Sbjct: 10 RTLARSQALQILFQAEVRGESVGDVLAGDFTLSKGPLAD--YAIQIARGVDANRERIDSA 67 Query: 66 MKPYLSRL-LEELGQVEKAVLRIALYELSKR--SDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ + LE + ++ +LR A+YEL + + V INEA+E+AK++G +DS F Sbjct: 68 LRAVSANWSLERMPGADRNLLRAAVYELYFQVADTLDAAVVINEAVEIAKAYGTDDSAGF 127 Query: 123 VNGVLDKAAPV 133 VNGVL + Sbjct: 128 VNGVLGRIVRE 138 >UniRef50_C9KK33 Transcription antitermination factor NusB n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KK33_9FIRM Length = 143 Score = 132 bits (333), Expect = 4e-30, Method: Composition-based stats. Identities = 40/140 (28%), Positives = 68/140 (48%), Gaps = 11/140 (7%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEY---------QFLAEQDVKDVDVLYFRELLAG 54 +RR+ARE A+QAL+ L+ + AD E + + D + +L+ G Sbjct: 1 MSRRQAREVALQALFQLDLNPAESADQEEMQETLAIDTALGEAEAMSAHDRAFVAQLVHG 60 Query: 55 VATNTAYLDGLMKPYL-SRLLEELGQVEKAVLRIALYELSK-RSDVPYKVAINEAIELAK 112 N +D + +E + V++ + R+A YE+ + +AINEA+ELAK Sbjct: 61 TRANLEAIDAQIAANSREWKVERMAAVDRNLTRMATYEMCFAEEKLTPNIAINEAVELAK 120 Query: 113 SFGAEDSHKFVNGVLDKAAP 132 +G +DS ++VNG+L Sbjct: 121 KYGTDDSSRYVNGILGAIMK 140 >UniRef50_UPI0000E87F00 transcription antitermination protein NusB n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87F00 Length = 155 Score = 132 bits (333), Expect = 4e-30, Method: Composition-based stats. Identities = 54/136 (39%), Positives = 79/136 (58%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 RR++RE ++++Y ++Q DI ++ + D D + ++ GV N L Sbjct: 15 INNRRKSRELVMKSIYRGIVNQFDINQIKKDIREDPDFVRSDESMYLSIVEGVHNNFDSL 74 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 +K YL R +EL +E A+L +LYEL DVPY+V INEAIE+AKSFG D KF Sbjct: 75 KEEIKTYLDRSYDELSPIELAILFSSLYELKFSLDVPYRVVINEAIEVAKSFGGVDGFKF 134 Query: 123 VNGVLDKAAPVIRPNK 138 +NG+L+KAA R N+ Sbjct: 135 INGILNKAAQHNRKNE 150 >UniRef50_Q983A9 N utilization substance protein B homolog n=3 Tax=Alphaproteobacteria RepID=NUSB_RHILO Length = 155 Score = 132 bits (333), Expect = 4e-30, Method: Composition-based stats. Identities = 46/150 (30%), Positives = 79/150 (52%), Gaps = 11/150 (7%) Query: 1 MKPAARR-RARECAVQALYSWQLSQNDIADVEYQF--------LAEQDVKDVDVLYFREL 51 M+ A +R AR AVQALY ++ + + ++ ++ + ++ D +FR + Sbjct: 1 MRHANKRGAARLAAVQALYQMDVAGSGVFEITAEYEAFRLGKEVDGALYREADAQWFRAI 60 Query: 52 LAGVATNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIE 109 L GV + +D +++ L L L +A+LR +YEL KR DVP V ++E ++ Sbjct: 61 LTGVVEDQKTIDPVIRQALTDDWPLSRLDSTLRAILRAGVYELMKREDVPVAVIVSEYVD 120 Query: 110 LAKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 +AK+F ED K VN VLD+ + +R + Sbjct: 121 IAKAFYEEDEPKLVNAVLDRVSRRVRGEGR 150 >UniRef50_B8CWT0 Sun protein n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWT0_HALOH Length = 440 Score = 132 bits (332), Expect = 5e-30, Method: Composition-based stats. Identities = 33/128 (25%), Positives = 54/128 (42%), Gaps = 2/128 (1%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 +R+ A++ L V + L + D + EL+ GV LD ++ Sbjct: 4 SRKVAIKVLIEID-KGAYSNLVLNKELNKVS-DKRDRAFITELVYGVLRQKKRLDYMLSC 61 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 + R L ++ + LR+ALY++ VP + A+ E +E KSF + KF NGVL Sbjct: 62 FSKRPLRKMDNEVLSALRVALYQIEYTDSVPARAAVYETVEALKSFTGHGAVKFTNGVLR 121 Query: 129 KAAPVIRP 136 Sbjct: 122 SYLRNKDK 129 >UniRef50_A4W3P3 Transcription termination factor n=6 Tax=Streptococcus suis RepID=A4W3P3_STRS2 Length = 140 Score = 131 bits (331), Expect = 6e-30, Method: Composition-based stats. Identities = 45/138 (32%), Positives = 72/138 (52%), Gaps = 5/138 (3%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVL---YFRELLAGVAT 57 M R R+CA+QA+ S + Q + ++ +L +++ + V + L+ GVA Sbjct: 1 MMKNNRHALRKCALQAIVSLEFGQEPVQAAQFSYLYDREEEQEGVEIPLFLLNLVNGVAD 60 Query: 58 NTAYLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG 115 LD + L L+ L ++K ++R+ L+E+ + P +VA+NEAIELAK F Sbjct: 61 YRDDLDKELSSRLKAGWTLDRLTLIDKNIMRLGLFEILHFEETPDRVAVNEAIELAKEFS 120 Query: 116 AEDSHKFVNGVLDKAAPV 133 E S KFVNGVL + Sbjct: 121 DESSAKFVNGVLSQFIKE 138 >UniRef50_UPI00016C04B6 transcription termination factor n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C04B6 Length = 135 Score = 131 bits (331), Expect = 7e-30, Method: Composition-based stats. Identities = 43/137 (31%), Positives = 71/137 (51%), Gaps = 4/137 (2%) Query: 4 AARRRARECAVQALYSWQLSQND-IADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 RR+AR C VQ LY+ + ++ + L D+K + E G+ N + Sbjct: 1 MTRRQARICVVQMLYNLSFHDKEQAQEILNENL--LDIKGKVKTFISETFEGIVDNMDAI 58 Query: 63 DGLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D ++ L L + +V+ +LR+A+YE++ D+P KVAINEA+E+A+ + E S K Sbjct: 59 DTEIEANLVDWNLSRIAKVDLMILRLAVYEINYAKDLPPKVAINEAVEIAQEYSTEKSGK 118 Query: 122 FVNGVLDKAAPVIRPNK 138 F+NG+L + N Sbjct: 119 FINGILGNMNKKVSSNG 135 >UniRef50_B9E6Q9 N utilization substance protein B homolog n=6 Tax=Staphylococcaceae RepID=NUSB_MACCJ Length = 130 Score = 131 bits (330), Expect = 7e-30, Method: Composition-based stats. Identities = 43/131 (32%), Positives = 73/131 (55%), Gaps = 4/131 (3%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +R +RE A+Q L+ + ++ VE + + DV + EL+ GV + LD Sbjct: 1 MSRTESREHAIQILFQIE-NEAHEISVEDATRFIVEPPNRDV-FADELVHGVISKQNELD 58 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + P+L LE L ++++ +LR++ +EL +D P KV +NEA+ LAK F ++S+KF Sbjct: 59 DKITPHLKSWALERLNKIDRIILRLSAFELLY-TDAPEKVIVNEAVNLAKKFSDDESYKF 117 Query: 123 VNGVLDKAAPV 133 +NGVL + Sbjct: 118 INGVLSEIIKN 128 >UniRef50_Q2S6K8 N utilization substance protein B homolog n=1 Tax=Salinibacter ruber DSM 13855 RepID=NUSB_SALRD Length = 160 Score = 131 bits (330), Expect = 8e-30, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 65/138 (47%), Gaps = 2/138 (1%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQ-DVKDVDVLYFRELLAGVATNTAYL 62 ++RR ARE ++ LY+ + + D + + D + L Sbjct: 2 SSRRDAREQVMKTLYANEQTDGDAEQALHALVRVPLDEDPSTRDFAEHLFRETLKTMEEA 61 Query: 63 DGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D +++ + + + +++++LR+A EL K +VP KV+++EAIE+AK + S Sbjct: 62 DEIIEKHADNWEIHRIAAIDRSLLRMATTELLKFEEVPPKVSVDEAIEIAKRYSTPRSGT 121 Query: 122 FVNGVLDKAAPVIRPNKK 139 FVNGV+D + + Sbjct: 122 FVNGVIDAILLDLHDQGR 139 >UniRef50_C4FTS3 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FTS3_9FIRM Length = 154 Score = 131 bits (330), Expect = 8e-30, Method: Composition-based stats. Identities = 46/145 (31%), Positives = 72/145 (49%), Gaps = 10/145 (6%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDV------LYFRELLAGV 55 K + R + RE AVQ ++ Q ++ + A + D + Y L+ GV Sbjct: 10 KMSNRHQVREKAVQTIFQLIRPQVPVSLDQACAFALEAGNDPEAGFEGSDAYLDRLVQGV 69 Query: 56 ATNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSK--RSDVPYKVAINEAIELA 111 LD + YL L+ L +++ A+LR+A YEL +VP KVA+NEA+ELA Sbjct: 70 NQTAEELDQRISHYLAEDWTLDRLARIDLAILRVAFYELLYVSEDEVPSKVAVNEAVELA 129 Query: 112 KSFGAEDSHKFVNGVLDKAAPVIRP 136 K+F + S +F+NGVL ++ Sbjct: 130 KTFSDDKSKQFINGVLAGLLKDLKN 154 >UniRef50_C0GIQ4 Sun protein n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GIQ4_9FIRM Length = 451 Score = 131 bits (330), Expect = 8e-30, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 55/133 (41%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 M + ARE ++ AL + + + L+ + D E+ GV T Sbjct: 1 MTRKRKIDAREASLLALQRVEADDAYVNLALDEVLSSHSLDPRDKRLAAEITYGVITYKL 60 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD L++ R +++L + +LRI Y+L VP A++ +EL K Sbjct: 61 TLDWLIEKVSGRPIKKLDKPIHQILRIGFYQLFYLDRVPPAAAVHATVELVKKGKKRGLA 120 Query: 121 KFVNGVLDKAAPV 133 FVNGV+ A Sbjct: 121 PFVNGVMRGALRK 133 >UniRef50_A4XLC1 N utilization substance protein B homolog n=2 Tax=Clostridia RepID=NUSB_CALS8 Length = 142 Score = 131 bits (330), Expect = 9e-30, Method: Composition-based stats. Identities = 44/134 (32%), Positives = 75/134 (55%), Gaps = 6/134 (4%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVE-----YQFLAEQDVKDVDVLYFRELLAGVATN 58 RR+ RE ++ LY+++ N+ +E + +++ K++D Y ++LL GV N Sbjct: 2 HKRRKTRELCMKILYAYRFQNNEYDIIEFLNKFKELNPDENFKEIDEEYLKKLLTGVIRN 61 Query: 59 TAYLDGLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 +D L++ Y L + VE ++RIA+YEL ++P VAI+EA++L+ FG E Sbjct: 62 QQLIDNLIEKYSKDWPLSRIPMVELELMRIAIYELLFEEEIPISVAIDEAVDLSSIFGVE 121 Query: 118 DSHKFVNGVLDKAA 131 + FVNG+L A Sbjct: 122 KAPSFVNGILGSIA 135 >UniRef50_C8W9W3 NusB antitermination factor n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8W9W3_ATOPD Length = 167 Score = 131 bits (330), Expect = 9e-30, Method: Composition-based stats. Identities = 42/140 (30%), Positives = 71/140 (50%), Gaps = 7/140 (5%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVE--YQFLAEQDVKDVDVLYFRELLAGVATNT 59 K R RAR A+Q L+ + + + +V L+E + Y R L G Sbjct: 4 KFFGRTRARSQALQLLFQAEATNRSVLEVLGGDYTLSEGPLD----EYARLLAVGADGIR 59 Query: 60 AYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 LD ++ Y ++ + V++ +LRI+LYE+ K +V VAINE ++LA+++ +D Sbjct: 60 DDLDDIIAAYSKDWSIDRMPSVDRNLLRISLYEILKVPEVDVAVAINEVVDLARAYCGDD 119 Query: 119 SHKFVNGVLDKAAPVIRPNK 138 S +F+NGVL + I + Sbjct: 120 SPRFINGVLGRIVDDIDAGE 139 >UniRef50_D2RJI2 NusB antitermination factor n=2 Tax=Acidaminococcus RepID=D2RJI2_ACIFE Length = 139 Score = 131 bits (330), Expect = 9e-30, Method: Composition-based stats. Identities = 45/136 (33%), Positives = 73/136 (53%), Gaps = 6/136 (4%) Query: 4 AARRRARECAVQALYSWQLSQN-DIADVEYQFLAEQDVKD---VDVLYFRELLAGVATNT 59 +RR AR A+++L++ + S + E+D++D D+ Y +L+ GV N Sbjct: 1 MSRRDARTIAMRSLFALEFSPEQSPEETVRTMAEEEDIQDTRKKDLAYALDLVKGVRENQ 60 Query: 60 AYLDGLMKPY-LSRLLEELGQVEKAVLRIALYELSKRSD-VPYKVAINEAIELAKSFGAE 117 LDG + L+ + +++ +LRIA YE+ + VP VAINEA+ELAK +G + Sbjct: 61 EALDGELNGLDAKWTLKRMNGIDRNLLRIAGYEMFCSPEPVPPAVAINEAVELAKVYGGD 120 Query: 118 DSHKFVNGVLDKAAPV 133 DS F+NG+L Sbjct: 121 DSPAFINGLLGSLVKK 136 >UniRef50_B0REX0 N utilization substance protein B homolog n=4 Tax=Actinobacteria (class) RepID=NUSB_CLAMS Length = 137 Score = 131 bits (330), Expect = 9e-30, Method: Composition-based stats. Identities = 43/132 (32%), Positives = 71/132 (53%), Gaps = 4/132 (3%) Query: 4 AARRRARECAVQALYSWQLSQNDIAD---VEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 +AR +AR+ A+ LY + I VE Q A + + Y RE+ G + Sbjct: 2 SARTKARKRALDVLYVADIRGESIPATLAVEQQRAAAEPDRQASWAYAREIAEGFVEHQD 61 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D L++ Y L + V++A+LRI ++E+ +DVP VAI+E+++LA S ++S Sbjct: 62 EIDELIETYSVNWTLARMPAVDRAILRIGIWEILFNADVPDGVAISESVDLASSLSTDES 121 Query: 120 HKFVNGVLDKAA 131 FVNG+L + A Sbjct: 122 ASFVNGMLARIA 133 >UniRef50_Q3AAM1 N utilization substance protein B homolog n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=NUSB_CARHZ Length = 144 Score = 130 bits (329), Expect = 1e-29, Method: Composition-based stats. Identities = 47/139 (33%), Positives = 72/139 (51%), Gaps = 6/139 (4%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQD-----VKDVDVLYFRELLAGVATN 58 R ARE A +AL+ + D AE+ + V + REL+ GV Sbjct: 1 MNRHTARELAFKALFGLDFAPEKTLDTLESLWAEKIAEGKIPPEKLVDFSRELVRGVIEK 60 Query: 59 TAYLDGLMKP-YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 LD +++ + + L +V+K +LR+ALYE+ R D+ V+I+EA+ELAK +G E Sbjct: 61 KERLDEIIRRRAIGWDFKRLAKVDKTLLRLALYEMLYRPDIDIPVSIDEAVELAKVYGEE 120 Query: 118 DSHKFVNGVLDKAAPVIRP 136 +S KF+NG+L A I Sbjct: 121 ESPKFINGILGYVAEHIDE 139 >UniRef50_C8WXH1 NusB antitermination factor n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WXH1_ALIAD Length = 166 Score = 130 bits (328), Expect = 1e-29, Method: Composition-based stats. Identities = 51/139 (36%), Positives = 75/139 (53%), Gaps = 3/139 (2%) Query: 4 AARRRARECAVQALYSWQL-SQNDIADVEYQFLAEQDVK-DVDVLYFRELLAGVATNTAY 61 R ARECA+QAL + A+ LAE+ D Y EL+ G + Sbjct: 1 MTRHEARECALQALCVLDVQRDLGSAEAIASALAERGTDAGGDFTYIEELVDGTRRHLDE 60 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D L+ ++ R E +G+VE+ VLR+A YEL ++P AI+EA+E+AK+F E S Sbjct: 61 IDELLARHMERWSPERIGRVERNVLRLATYELLFEPELPIASAIDEAVEIAKTFATEQSG 120 Query: 121 KFVNGVLDKAAPVIRPNKK 139 +FVNGVL K P + ++ Sbjct: 121 RFVNGVLAKLLPAVADRRR 139 >UniRef50_C4V2M6 Transcription antitermination protein NusB n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V2M6_9FIRM Length = 137 Score = 130 bits (328), Expect = 1e-29, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 67/136 (49%), Gaps = 5/136 (3%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQ---DVKDVDVLYFRELLAGVATNTA 60 +RR ARE A+ L+ + + V LA + + D+ Y L+ G + Sbjct: 1 MSRRHAREAALLTLFQREFDHDRPPIVAAGDLASDAVDGLTEKDLAYANRLVQGTCSVQP 60 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSK-RSDVPYKVAINEAIELAKSFGAED 118 +D ++ L + V++ ++R+A YE+ + +AINEA+ELAK +G++D Sbjct: 61 EIDAAIECMAKEWKLHRMAPVDRNLIRMAYYEMCYQEERIDPPIAINEAVELAKKYGSDD 120 Query: 119 SHKFVNGVLDKAAPVI 134 + ++VNG+L + Sbjct: 121 AGRYVNGILAALQKSM 136 >UniRef50_B5YE05 N utilization substance protein B homolog n=2 Tax=Dictyoglomus RepID=NUSB_DICT6 Length = 144 Score = 130 bits (328), Expect = 2e-29, Method: Composition-based stats. Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 8/132 (6%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R R RE +Q L+ L Q +VE F D + L G D + Sbjct: 5 RTRCREKVLQLLFQKDLGQ----EVEVDF---SDFSPQGQAFAYRLYDGALQYKDLADSI 57 Query: 66 MKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + + LE +G +E+ +LR+A+ E+ SD+P V +NEA+ELAK + + ++ +FVN Sbjct: 58 ISRFSKNWKLERMGALERNILRLAIAEMFTFSDIPQAVTVNEAVELAKKYVSPEAGRFVN 117 Query: 125 GVLDKAAPVIRP 136 G+L Sbjct: 118 GILRNIVRNWEE 129 >UniRef50_A0LUG6 N utilization substance protein B homolog n=2 Tax=Actinomycetales RepID=NUSB_ACIC1 Length = 145 Score = 130 bits (327), Expect = 2e-29, Method: Composition-based stats. Identities = 38/127 (29%), Positives = 65/127 (51%), Gaps = 3/127 (2%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 AR +AR+ A+ L+ L D ++ A Y L+ GVA + A +D Sbjct: 3 ARTKARKRALDVLFEADLRAADPLEILADHTARA--DTPVPEYAVRLVEGVAAHRAEIDR 60 Query: 65 LMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 +++ + L+ + V++ +LR+A+YEL ++VP V + EA++LA+ +S FV Sbjct: 61 IIEQFAVGWTLQRMPTVDRNILRLAIYELLWVTEVPDAVVLAEAVKLAQDLSTAESAPFV 120 Query: 124 NGVLDKA 130 NGVL Sbjct: 121 NGVLAAV 127 >UniRef50_A8SLT0 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SLT0_9FIRM Length = 134 Score = 130 bits (327), Expect = 2e-29, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 2/134 (1%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 R ARE ++ +Y + N D F+ D+ +V Y R+ + N +D Sbjct: 1 MTRSEAREWCMKLIYQLSIHNNFKCDEIESFIEYFDLPSSEVKYIRKNCKSIIDNLDNID 60 Query: 64 GLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 ++K L + +++ A+LR+A+ E+ D+P VAINEAIE+A + + S+K Sbjct: 61 NIIKENLEGCWNYNRIAKIDLAILRVAVNEIYYLDDIPESVAINEAIEIANKYSTDASYK 120 Query: 122 FVNGVLDKAAPVIR 135 F+NG+L + Sbjct: 121 FINGILGTIVRAKK 134 >UniRef50_Q3A7Z0 Sun protein n=2 Tax=Desulfuromonadales RepID=Q3A7Z0_PELCD Length = 451 Score = 130 bits (327), Expect = 2e-29, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 48/125 (38%), Gaps = 2/125 (1%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFL-AEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 R A L + L A D+ D EL+ GV LD ++ Sbjct: 7 RHIAFDILDKVH-NGAFADLALDSALQALPDMDVRDRALATELVYGVLRYRGRLDFALQQ 65 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 + L ++ +LR+ Y++ + +P A+ E +ELA+ + + F+NG+L Sbjct: 66 LCRKPLAKVEPAVLNLLRLGCYQILQLDRIPNHAAVFETVELARRLKLQRATGFINGILR 125 Query: 129 KAAPV 133 Sbjct: 126 GLVRQ 130 >UniRef50_C2D814 Putative uncharacterized protein n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D814_9ACTN Length = 239 Score = 129 bits (326), Expect = 2e-29, Method: Composition-based stats. Identities = 44/138 (31%), Positives = 71/138 (51%), Gaps = 7/138 (5%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEY--QFLAEQDVKDVDVLYFRELLAGVATNTAY 61 A R AR A+Q ++ + + DV L+E + D + + L G Sbjct: 11 AGRTLARSQALQLMFQAESRNMQVCDVLATNYLLSEGPLDD----FGKRLALGTDELRDK 66 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD L+ ++ L L V++ +LR+ALYE+ K DV V INE++ LAK++G ++S Sbjct: 67 LDALISRVITNWNLNRLLSVDRNILRLALYEMIKVDDVDIAVTINESVNLAKAYGTDESS 126 Query: 121 KFVNGVLDKAAPVIRPNK 138 FVNGVL + A ++ + Sbjct: 127 HFVNGVLGQVARMMENGR 144 >UniRef50_C4ZCZ0 N utilization substance protein B homolog n=5 Tax=Clostridiales RepID=NUSB_EUBR3 Length = 131 Score = 129 bits (326), Expect = 2e-29, Method: Composition-based stats. Identities = 41/131 (31%), Positives = 70/131 (53%), Gaps = 3/131 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQ--DVKDVDVLYFRELLAGVATNTAY 61 R + RE + L+ + + + L ++ + D + Y E + + + A Sbjct: 1 MTRSKIRENVFKMLFRVEFHDKSELAEQMELLNDELTNPTDEERQYIDEKCSAIIEHMAE 60 Query: 62 LDGLMKPYLSRLL-EELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD L+ + + +V+ A++R+A+YE+ D+P KV+INEA+ELAK +GA++S Sbjct: 61 LDALIDEKSTGWKTNRMAKVDLAIIRLAVYEIKFEDDIPTKVSINEAVELAKKYGADESG 120 Query: 121 KFVNGVLDKAA 131 FVNGVL K A Sbjct: 121 AFVNGVLAKFA 131 >UniRef50_D0LW51 NusB antitermination factor n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LW51_HALO1 Length = 150 Score = 129 bits (326), Expect = 2e-29, Method: Composition-based stats. Identities = 46/141 (32%), Positives = 74/141 (52%), Gaps = 4/141 (2%) Query: 1 MKPAARRRARECAVQALYSWQLSQ-NDIADVEYQFLAEQDV--KDVDVLYFRELLAGVAT 57 MK ARRRAR A+Q LY+ L+ + ++ D+ + + R L+ V Sbjct: 1 MKVGARRRARSYALQVLYALDLNPLEEPTRALLEYAGRFDLRIDEEAGDFARSLIEQVYP 60 Query: 58 NTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 + +D ++ +E + +V++ VLR+A+ ELS+ +V INEA+ELAK FG Sbjct: 61 HLERIDERIQTASRNWRIERMSRVDRNVLRLAVGELSQPDGAAARVVINEAVELAKRFGT 120 Query: 117 EDSHKFVNGVLDKAAPVIRPN 137 +S FVNG+LD+ R + Sbjct: 121 TESPAFVNGILDRVDQHKRDD 141 >UniRef50_C9RN69 NusB antitermination factor n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RN69_FIBSS Length = 146 Score = 129 bits (326), Expect = 2e-29, Method: Composition-based stats. Identities = 42/134 (31%), Positives = 70/134 (52%), Gaps = 1/134 (0%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 M + R AR A+Q LY+ ++S +AD L Q ++D Y +L+ V + A Sbjct: 1 MAQVSFRPARVFAMQLLYAMEISGGTVADALPGVLEAQPLQDNMKKYGMKLVDLVLAHKA 60 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 LD ++ + +E + +++ VLRIA+ EL ++P KV I+EA+++A F + S Sbjct: 61 ELDSEIEACSAHWGIERMATLDRIVLRIAMVELLYVPEIPMKVVISEAVQVAAKFSTDSS 120 Query: 120 HKFVNGVLDKAAPV 133 FVNG+L Sbjct: 121 GTFVNGLLAGFLQK 134 >UniRef50_UPI00016C38F9 Fmu, rRNA SAM-dependent methyltransferase:Nop2p n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C38F9 Length = 465 Score = 129 bits (325), Expect = 3e-29, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 62/130 (47%), Gaps = 1/130 (0%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR+ A L + A++ + ++ D + +L+ GV LD L+KP Sbjct: 5 ARQVAADVLNRSRSRDGFAAELVDDAVNAANLSPQDRRFVTQLVFGVIRRGGTLDALLKP 64 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 ++ + +LR+ ++L+ + VP A++E +ELA+ GA + FVNGVL Sbjct: 65 FIHLPTHAVQDRVWDLLRLGAFQLTFLTHVPKHAAVHETVELAEHVGAPKAKGFVNGVLR 124 Query: 129 KAAPVIRPNK 138 + A + ++ Sbjct: 125 RIA-ELTTDE 133 >UniRef50_A5KNU7 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=A5KNU7_9FIRM Length = 456 Score = 129 bits (325), Expect = 3e-29, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 53/130 (40%), Gaps = 1/130 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNTAYLDGLMKP 68 RE L + V + L + ++ + + + G + +D ++ Sbjct: 8 REIVAAILMEVTENGRYSHIVLREVLTKYQYLEKRERAFITRVTEGTLEHMTEIDYILDC 67 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 + ++++ + +A+LR A+Y++ +P +E+++LA G +VNGVL Sbjct: 68 FSKVKVKKMKPLIRAILRSAVYQIKYMDSIPDHAVCSESVKLAVKKGFSGLRGYVNGVLR 127 Query: 129 KAAPVIRPNK 138 I + Sbjct: 128 SVVKGIDEVE 137 >UniRef50_Q2JK83 Ribosomal RNA small subunit methyltransferase B n=1 Tax=Synechococcus sp. JA-2-3B'a(2-13) RepID=Q2JK83_SYNJB Length = 457 Score = 129 bits (325), Expect = 3e-29, Method: Composition-based stats. Identities = 31/126 (24%), Positives = 51/126 (40%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR+ A+ AL + V LA + D EL+ G+ LD L+ Sbjct: 3 ARQLALLALQKIERQNAYADLVLGHLLANSSLIPADRHLVSELVYGITRRRRTLDALIDC 62 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 R + + +L + LY+L+ +P AI+ ++ELA+ G VNG+L Sbjct: 63 LAQRPAHKQPPDLRLILHLGLYQLAFLDQIPASAAIHTSVELARQMGLGSLTGVVNGILR 122 Query: 129 KAAPVI 134 + Sbjct: 123 AYQRQV 128 >UniRef50_A7VX44 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VX44_9CLOT Length = 134 Score = 129 bits (325), Expect = 3e-29, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 68/137 (49%), Gaps = 6/137 (4%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK R ARE A ++ + + ++ +D+ + + + GV + Sbjct: 1 MK---RHEAREQAFFLIFERTFQEASLEELVESAQLARDIT--ICGFAQNVFHGVEKHGE 55 Query: 61 YLDGLMKPY-LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +DG+++ + + L +V +VLR A+YE+ +P V+INEA+E+AK++G+ + Sbjct: 56 EIDGMIEKHCIGWTKNRLSRVAVSVLRTAVYEMLYEEKIPVSVSINEAVEIAKTYGSTED 115 Query: 120 HKFVNGVLDKAAPVIRP 136 FVNGVL A + Sbjct: 116 ASFVNGVLGSVAKELES 132 >UniRef50_Q5FNA1 N utilization substance protein B homolog n=1 Tax=Gluconobacter oxydans RepID=NUSB_GLUOX Length = 160 Score = 128 bits (324), Expect = 4e-29, Method: Composition-based stats. Identities = 42/142 (29%), Positives = 69/142 (48%), Gaps = 15/142 (10%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVK-----------DVDVLYFRELLA 53 +R AR AVQAL+ + S + V QF+ + + D D+ F+E++ Sbjct: 15 SRTIARVAAVQALFQCEQSGDTAETVISQFIRHRRISSTASFDDGHIPDADLKLFQEIVL 74 Query: 54 GVATNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELA 111 GV +D + L L L V +A+LR A++E+ +D P ++ INE +++A Sbjct: 75 GVTRRQDDIDAKLSDVLPEQWPLPRLDPVLRALLRAAVFEI--GTDTPDRIIINEYLDVA 132 Query: 112 KSFGAEDSHKFVNGVLDKAAPV 133 F + D K VNG+LD + Sbjct: 133 HGFFSGDEPKMVNGILDTLSRR 154 >UniRef50_B7KB91 Sun protein n=19 Tax=Cyanobacteria RepID=B7KB91_CYAP7 Length = 452 Score = 128 bits (324), Expect = 4e-29, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 1/130 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R+ A+ L + Q + D+ ++D EL+ G+ LD ++ Sbjct: 9 RQLALIILRDIYQKEAYTDLALDQGIKRADLGNLDRGLVTELVYGIVRRQRTLDEIISQL 68 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 ++ + + +L I LY+L +P A+N ++ELAK VNG+L + Sbjct: 69 GTKKANQQPPDLRLILHIGLYQLRYLDQIPPSAAVNTSVELAKKNKLGKLSGVVNGILRQ 128 Query: 130 AAPVIRPNKK 139 I+ K Sbjct: 129 YDR-IKEQGK 137 >UniRef50_C7H0C2 Transcription antitermination factor NusB n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H0C2_9FIRM Length = 135 Score = 128 bits (324), Expect = 5e-29, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 67/132 (50%), Gaps = 1/132 (0%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 R +AR A+Q ++ + + + + L++ + Y RE+ + V N +D Sbjct: 4 NRSKARTIAMQIIFQIPVHKTTDKVLVDKILSDYKNIGKEEAYIREVFSLVTDNIDAIDA 63 Query: 65 LMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 + + ++ + +V+ A+LR+A+ E+ D+P VA+NEA+ +AK F + S KF+ Sbjct: 64 ELNAKMKGWTIDSIPKVDLAILRLAVAEICYAKDIPKVVAVNEAVRIAKKFSDDKSAKFI 123 Query: 124 NGVLDKAAPVIR 135 NG+L + Sbjct: 124 NGILANIGKDYK 135 >UniRef50_Q7USA9 N utilization substance protein B homolog n=2 Tax=Planctomycetaceae RepID=NUSB_RHOBA Length = 145 Score = 128 bits (323), Expect = 5e-29, Method: Composition-based stats. Identities = 43/139 (30%), Positives = 67/139 (48%), Gaps = 3/139 (2%) Query: 2 KPAARRRARECAVQALYSWQLSQ-NDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 + + RRRARE +Q LY L+ D A + + V + ELL G Sbjct: 4 RMSTRRRAREIVLQLLYEADLNDWRDAATSRKFIRSRLQGRKVLTDFAAELLDGTMARRD 63 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D + + L + ++ VLR+ YE+ S P +VAI+EA+ LAK +G E+S Sbjct: 64 DIDAKLTKLSTNWALHRMPVTDRNVLRLGAYEILY-SGTPGQVAISEALTLAKRYGGENS 122 Query: 120 HKFVNGVLDKAAPVIRPNK 138 +F+NGVLD+ + Sbjct: 123 PRFINGVLDRLFKYHSNPE 141 >UniRef50_A8LE23 Fmu (Sun) domain protein n=3 Tax=Frankia RepID=A8LE23_FRASN Length = 495 Score = 128 bits (323), Expect = 5e-29, Method: Composition-based stats. Identities = 33/142 (23%), Positives = 57/142 (40%), Gaps = 7/142 (4%) Query: 1 MKPAARRR------ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAG 54 M +A RR AR A + L + + L+ + + D + EL G Sbjct: 1 MSVSAPRRGGTTDPARLLAWEVLRAVDERGAYANLLLPALLSGRRLSPRDRGFATELTYG 60 Query: 55 VATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 LDG++ SR + + + LR+ Y+L + VP + A+ ++L ++ Sbjct: 61 SLRAQGTLDGVLDTVTSRPVASVDPPVRDALRLGAYQLL-STRVPPRAAVASTVDLVRAT 119 Query: 115 GAEDSHKFVNGVLDKAAPVIRP 136 E +F N VL + A I Sbjct: 120 CGERPVRFANAVLRRVAARIEA 141 >UniRef50_B2IXU2 Sun protein n=1 Tax=Nostoc punctiforme PCC 73102 RepID=B2IXU2_NOSP7 Length = 487 Score = 128 bits (323), Expect = 5e-29, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 1/124 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R+ A AL + L + ++ D D EL+ G LD L+ + Sbjct: 5 RQLAFIALRDVH-KGAYADVALDRVLQKVNLPDRDRRLVTELVYGSVRRQRTLDTLIDQF 63 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 + Q + +L + Y+L + +P A+N ++LAK G FVNG+L + Sbjct: 64 AKNKSHQQPQDLRTILHLGFYQLRYQERIPASAAVNTTVQLAKENGFSGLTGFVNGLLRQ 123 Query: 130 AAPV 133 Sbjct: 124 YLRK 127 >UniRef50_Q4JVG6 N utilization substance protein B homolog n=5 Tax=Corynebacterium RepID=NUSB_CORJK Length = 202 Score = 128 bits (323), Expect = 6e-29, Method: Composition-based stats. Identities = 38/140 (27%), Positives = 70/140 (50%), Gaps = 6/140 (4%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVK----DVDVLYFRELLAGVAT 57 + +R +AR AV L+ + D ++ + ++ Y ++++ GVAT Sbjct: 19 RHGSRYKARRRAVDILFEAEFRDIDPVEIVEERISLAKDSANQVKPVPEYTQQIVPGVAT 78 Query: 58 NTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG 115 N LD + +L L+ L V++AVLR+A +EL DVP +VA+ E +ELA + Sbjct: 79 NLDALDEAIALHLSSDWQLDRLPAVDRAVLRVAAWELKFNDDVPPQVAVVEGVELASEYS 138 Query: 116 AEDSHKFVNGVLDKAAPVIR 135 + + +++ VLD ++ Sbjct: 139 HDKAPSYIHAVLDGINKDLQ 158 >UniRef50_A8MFJ3 N utilization substance protein B homolog n=2 Tax=Alkaliphilus RepID=NUSB_ALKOO Length = 138 Score = 128 bits (323), Expect = 6e-29, Method: Composition-based stats. Identities = 40/131 (30%), Positives = 71/131 (54%), Gaps = 1/131 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +R+ ARE ++ L+ ++ + L E +++ Y ++L N +D Sbjct: 1 MSRKLARELTMKVLFEMHINNDFNIQRVEHHLFEGSIEEQQKEYIHKVLNEAILNLEAID 60 Query: 64 GLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 +++ Y S L + V+ A+LR+A E+ D+PY+V+INEAIELAK +G++++ F Sbjct: 61 SIIEEYSTSWKLNRIANVDLAILRLAFSEIIYMKDIPYRVSINEAIELAKIYGSDETPNF 120 Query: 123 VNGVLDKAAPV 133 VNG+L K Sbjct: 121 VNGILGKYVEQ 131 >UniRef50_C8WEQ4 NusB antitermination factor n=4 Tax=Zymomonas mobilis RepID=C8WEQ4_ZYMMN Length = 157 Score = 128 bits (323), Expect = 6e-29, Method: Composition-based stats. Identities = 41/144 (28%), Positives = 67/144 (46%), Gaps = 10/144 (6%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQF--------LAEQDVKDVDVLYFRELLAG 54 AR AR AVQALY ++ + + + +F + + + +F +++ G Sbjct: 10 KNARSAARLAAVQALYQREMEKTPLNILLDEFHQYRLGATIEDATYTKAEPSFFDDIVRG 69 Query: 55 VATNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAK 112 V T +D ++ L L+ L + + +LR YEL R DVP I+E I++A Sbjct: 70 VGTRCEEIDRVISENLSERWSLDRLDRPMRQILRAGTYELLARPDVPTATIISEYIDVAN 129 Query: 113 SFGAEDSHKFVNGVLDKAAPVIRP 136 +F FVNG+LD A +R Sbjct: 130 AFYDRQEKNFVNGLLDTVAKKLRS 153 >UniRef50_B5GBK3 RNA-binding Sun protein n=1 Tax=Streptomyces sp. SPB74 RepID=B5GBK3_9ACTO Length = 402 Score = 128 bits (323), Expect = 6e-29, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 47/128 (36%), Gaps = 5/128 (3%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQD----VKDVDVLYFRELLAGVATNTAYLDGL 65 R A AL + V L E D EL+ G D + Sbjct: 128 RVLAFDALRAVDERDAYANLVLPALLREAREKGGFDARDAALATELVYGTLRGRGTYDAV 187 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 + + R L E+ VL + ++L + +P A++ +ELA+ + +FVN Sbjct: 188 IAACVDRPLREVDPPVLDVLSLGAHQLL-GTRIPTHAAVSATVELARVVLGDGRSRFVNA 246 Query: 126 VLDKAAPV 133 VL + A Sbjct: 247 VLRRIARN 254 >UniRef50_B0MPP7 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MPP7_9FIRM Length = 439 Score = 128 bits (322), Expect = 6e-29, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 49/135 (36%), Gaps = 5/135 (3%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK AR+ + L + + D D + L GV Sbjct: 1 MKT-----ARQITLDLLIRMDTQGAYSNIILDHAFTQNDADRRDKAFSAALFYGVLERRM 55 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD L++ Y +++ +LR+ Y+L + VP A+NE++ L + + Sbjct: 56 TLDYLIRYYSGIEFDKIKTAVVEILRMGFYQLLFMNSVPDSAAVNESVALCDYCNSTKAK 115 Query: 121 KFVNGVLDKAAPVIR 135 +VN +L + Sbjct: 116 GYVNAILRTFLRNEK 130 >UniRef50_B7APZ1 Putative uncharacterized protein n=1 Tax=Bacteroides pectinophilus ATCC 43243 RepID=B7APZ1_9BACE Length = 374 Score = 128 bits (322), Expect = 6e-29, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 50/126 (39%), Gaps = 1/126 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNTAYLDGLMKP 68 R + L + + Q L++ + + L G + D L+ Sbjct: 11 RAVVLDILLENDKNPGHSNLITGQALSKFQYLPKSQRAFISRLAEGTIERSIEEDWLIDH 70 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 S +++ V + ++R++ Y+L VP NEA++LA+ G FVNGVL Sbjct: 71 VSSVSTKKMKPVIRNIMRMSAYQLKYMDSVPVSAVCNEAVKLARKRGFSSLTGFVNGVLR 130 Query: 129 KAAPVI 134 A I Sbjct: 131 SLARDI 136 >UniRef50_D1N6Z8 NusB antitermination factor n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N6Z8_9BACT Length = 170 Score = 128 bits (322), Expect = 7e-29, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 15/153 (9%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADV----------EYQFLAEQDVKDVDVLYFREL 51 KP A+R RE A+Q L+ + + E L E + Y ++L Sbjct: 13 KPHAKRLGRELAMQYLFRCDMRDELPSAATFGQFFEEVREQHALQENRLARKGREYAQQL 72 Query: 52 LAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIEL 110 VA + +D ++ + L V++ ++RIA+ E+ +VP V+I+EA+E+ Sbjct: 73 YNNVAVHKEEIDATIQARSENWEWDRLSVVDRNIMRIAVAEMLYEEEVPPVVSIDEAVEI 132 Query: 111 AKSFGAEDSHKFVNGVL----DKAAPVIRPNKK 139 A+ + E + F+NGVL D R +K+ Sbjct: 133 ARDYSGEAAGNFINGVLNGVKDTLKRSPRGDKR 165 >UniRef50_D1B3U2 Transcription antitermination factor NusB n=3 Tax=Campylobacterales RepID=D1B3U2_SULD5 Length = 136 Score = 128 bits (322), Expect = 7e-29, Method: Composition-based stats. Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 2/134 (1%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 A R +ARE + LY+ + I + E+ +++ + L GV + + +D Sbjct: 2 ATRHQARESIITLLYAEDIGNAGIDKFIDELFEEKKIRNQQKEFALGLYQGVKAHLSVID 61 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + +L L E+G +E+A+LR+ YE+ S++ V INEAIELAK E S KF Sbjct: 62 EAINRHLKEWNLSEIGMLERAILRLGGYEILY-SELDNAVVINEAIELAKKLCNETSPKF 120 Query: 123 VNGVLDKAAPVIRP 136 +NGVLD Sbjct: 121 INGVLDAICKEGEA 134 >UniRef50_B0MQ18 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MQ18_9FIRM Length = 143 Score = 128 bits (322), Expect = 7e-29, Method: Composition-based stats. Identities = 40/139 (28%), Positives = 71/139 (51%), Gaps = 3/139 (2%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 + R RE A+ L+ +L+ + ++ +++ +L GVA + Sbjct: 4 RKLTRHEMREAALLILFQMKLNPETLDEILEDCKESFEMEYNSQS--VKLAKGVAEHEDE 61 Query: 62 LDGLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 L+G+++ Y SR L+ + + A+++IALYE+ VP KVAINEAIE AK + + Sbjct: 62 LNGIIESYSPSRKLDRISYINLAIMKIALYEMKYCPSVPDKVAINEAIEFAKEYADKTDV 121 Query: 121 KFVNGVLDKAAPVIRPNKK 139 +F+NGVL+ ++ Sbjct: 122 RFINGVLNSYYKDNPTKEQ 140 >UniRef50_C9LUP3 Transcription antitermination factor NusB n=2 Tax=Selenomonas RepID=C9LUP3_9FIRM Length = 160 Score = 128 bits (322), Expect = 7e-29, Method: Composition-based stats. Identities = 45/140 (32%), Positives = 70/140 (50%), Gaps = 11/140 (7%) Query: 4 AARRRARECAVQALYSWQLSQNDIAD--------VEYQFLAEQDVK-DVDVLYFRELLAG 54 +RR+ARE A+Q L+ +L+ A + E V+ D Y L+ G Sbjct: 21 MSRRQAREAALQTLFQLELNPPSEAASEEACQMWALDAAVEEMPVETKRDYSYAASLVRG 80 Query: 55 VATNTAYLDGLMKPYL-SRLLEELGQVEKAVLRIALYELSK-RSDVPYKVAINEAIELAK 112 + A +D + L+ + V++ ++RIALYE+ V +AINEA+ELAK Sbjct: 81 TREHLAAIDEEIAASTHDWKLDRMTGVDRNIVRIALYEMKYGAEKVDVGIAINEAVELAK 140 Query: 113 SFGAEDSHKFVNGVLDKAAP 132 FG +DS ++VNG+L A Sbjct: 141 KFGTDDSSRYVNGILGGLAR 160 >UniRef50_B0PBD5 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PBD5_9FIRM Length = 161 Score = 128 bits (322), Expect = 7e-29, Method: Composition-based stats. Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 6/140 (4%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK R +RE A ++ I ++ Q ++++ D Y L + V N Sbjct: 1 MK---RSESREQAFMLIFERSFKDESIDEIIEQAAIGRNLQVDD--YAYRLASDVCGNLP 55 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +LD + Y + + + +V ++LR++L+E+ VP +INEA+ELAK +G +D Sbjct: 56 WLDEAIASYSKKWKINRMSRVALSILRLSLWEIDHVDTVPAGASINEAVELAKKYGNDDD 115 Query: 120 HKFVNGVLDKAAPVIRPNKK 139 FVNGVL +++ Sbjct: 116 FSFVNGVLGAYVRRKDSSEQ 135 >UniRef50_C3XMJ2 Transcription termination protein n=1 Tax=Helicobacter winghamensis ATCC BAA-430 RepID=C3XMJ2_9HELI Length = 199 Score = 128 bits (322), Expect = 7e-29, Method: Composition-based stats. Identities = 41/131 (31%), Positives = 68/131 (51%), Gaps = 2/131 (1%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 A R AR Q LY++ + I+ + L+E +K+ + + L GV + +D Sbjct: 2 ATRTHARVAVAQLLYAYGSGNDGISKFVEEILSEHKIKNAQNEFAKTLFNGVLEHLEEVD 61 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 +K + E +G +E+A+LR+ YE+ S + + INEA+E+ K+F E S KF Sbjct: 62 LRIKHQIKNWDFERIGDMERAILRLGAYEIIF-SGMDKAIVINEALEITKNFSNETSTKF 120 Query: 123 VNGVLDKAAPV 133 +NG+LD A Sbjct: 121 INGILDGIAKN 131 >UniRef50_Q7A601 SA1060 protein n=63 Tax=Staphylococcaceae RepID=Q7A601_STAAN Length = 461 Score = 128 bits (322), Expect = 7e-29, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 3/128 (2%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R A + + L+E ++ +D F E++ G LD +KP+ Sbjct: 32 RSLAFDTIQDILNEGAYSNLRINEVLSENELNAMDKALFTEIVYGTVKRKYTLDFYLKPF 91 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 + ++ + +L +++Y+ VP INEA+E+AK G + VNG+L Sbjct: 92 VK---TKIKAWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRT 148 Query: 130 AAPVIRPN 137 P+ Sbjct: 149 MMRSDLPD 156 >UniRef50_UPI00019779AE transcription antitermination protein NusB n=1 Tax=Helicobacter cinaedi CCUG 18818 RepID=UPI00019779AE Length = 165 Score = 128 bits (322), Expect = 7e-29, Method: Composition-based stats. Identities = 53/138 (38%), Positives = 73/138 (52%), Gaps = 3/138 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 A R +ARE + LY++ L DI D+ E+ +K+ + LL G TN +D Sbjct: 2 ATRTQAREAVIGMLYAYDLGNKDILDIARSMFEEKKIKNKQQDFAFLLLQGAITNLQSID 61 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED-SHK 121 + PYL LG +EKAVLR+ YE+ +D V INEAIEL K +G ED + + Sbjct: 62 EAIIPYLKEWDFSRLGGMEKAVLRLGAYEILY-TDTDSPVVINEAIELGKMYGGEDNTPR 120 Query: 122 FVNGVLDKAAPVIRPNKK 139 F+NGVLD + R K Sbjct: 121 FLNGVLDALSKAHRQMSK 138 >UniRef50_B4WR53 Ribosomal RNA small subunit methyltransferase B n=4 Tax=Cyanobacteria RepID=B4WR53_9SYNE Length = 491 Score = 127 bits (321), Expect = 8e-29, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 52/143 (36%), Gaps = 9/143 (6%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQD--------VKDVDVLYFRELLA 53 K A + AR+ A +AL + V + L + D EL+ Sbjct: 31 KTAKPKTARQIAFEALRAIDQ-GAFADVVIDRKLKGTQTGTQLGIQLSSQDKGLVTELVY 89 Query: 54 GVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKS 113 G LD L+ + R + + +LR+ Y+L VP ++ ++LAKS Sbjct: 90 GSVRRRRTLDALIDQFGKRPASKQHRDLLQILRLGFYQLRYLDHVPVHAVVDTTVQLAKS 149 Query: 114 FGAEDSHKFVNGVLDKAAPVIRP 136 VN +L + A P Sbjct: 150 QRLGKLSGVVNAMLRQYAREAMP 172 >UniRef50_C7MCY2 tRNA/rRNA cytosine-C5-methylase n=2 Tax=Micrococcineae RepID=C7MCY2_BRAFD Length = 551 Score = 127 bits (321), Expect = 9e-29, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 5/136 (3%) Query: 2 KPAARRR----ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVAT 57 +PA R R +R+ A++ L + + V + L V D + EL G Sbjct: 54 RPAERSRRSTPSRQVALEGLRLVREEDSYANLVLPRLLRSHRVSGRDAAFTTELFYGSLR 113 Query: 58 NTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 LD ++ + R LEE+ + VLR+ Y+L V A +E + LA++ Sbjct: 114 AQGRLDAILTACVDRPLEEVDPALRDVLRLGAYQLLDM-SVAPHAATSETVALARAEVGA 172 Query: 118 DSHKFVNGVLDKAAPV 133 FVN VL + Sbjct: 173 GGASFVNAVLRRVGEK 188 >UniRef50_A7HX88 NusB antitermination factor n=1 Tax=Parvibaculum lavamentivorans DS-1 RepID=A7HX88_PARL1 Length = 171 Score = 127 bits (321), Expect = 9e-29, Method: Composition-based stats. Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 10/136 (7%) Query: 12 CAVQALYSWQLSQNDIADVEYQFLA--------EQDVKDVDVLYFRELLAGVATNTAYLD 63 AVQALY ++ + +V +F+ + ++ D ++F +++ GV LD Sbjct: 25 FAVQALYQMDIAATPLDEVVEEFVEHRLEEPEGDNEIFAADKVHFEDVVRGVVREQRELD 84 Query: 64 GLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 + L+ L L +A+LR YEL + DVP KV INE +E+A +F D Sbjct: 85 VQVNSALAKGWSLARLDATLRAILRCGTYELRRCKDVPLKVVINEYVEIAHAFFEGDEPG 144 Query: 122 FVNGVLDKAAPVIRPN 137 VN VLD+ IR Sbjct: 145 VVNAVLDRLGRDIRAG 160 >UniRef50_Q47QY5 N utilization substance protein B homolog n=21 Tax=Actinomycetales RepID=NUSB_THEFY Length = 142 Score = 127 bits (320), Expect = 1e-28, Method: Composition-based stats. Identities = 38/133 (28%), Positives = 70/133 (52%), Gaps = 3/133 (2%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 + +R +AR AV+ LY ++ +++V + A+ + + +L V + A Sbjct: 6 RRGSRHKARVRAVEILYEAEVRGVPVSEVIERRRAQTE--PPINEFTEQLATRVDEHRAR 63 Query: 62 LDGLMKPY-LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D L++ Y + L+ + V++ +LRI +YEL D+P VAI EA+ +AK ++S Sbjct: 64 IDELLETYAIGWTLDRMPVVDRNILRIGVYELLWADDIPDGVAIAEAVAMAKELSTDESP 123 Query: 121 KFVNGVLDKAAPV 133 FVNG+L + Sbjct: 124 VFVNGLLSRLMEK 136 >UniRef50_D0WFZ4 Transcription antitermination factor NusB n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WFZ4_9ACTN Length = 218 Score = 126 bits (319), Expect = 1e-28, Method: Composition-based stats. Identities = 40/142 (28%), Positives = 70/142 (49%), Gaps = 10/142 (7%) Query: 1 MKPAARRR---ARECAVQALYSWQLSQNDIADVEYQ--FLAEQDVKDVDVLYFRELLAGV 55 M A R+ R A LY ++ + + + E + Y R LL G Sbjct: 1 MGKAKRQEHTFGRRSAASVLYQSEIIGKPVDRILEEGDIPEEAGLN----EYGRLLLLGF 56 Query: 56 ATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 + + A +D ++ + + + V++ +LRI +YE+ VP V+INEA+E+AK F Sbjct: 57 SAHRAEIDRIISERSANWAVNRMPMVDRELLRITVYEMKYVDAVPIPVSINEAVEIAKEF 116 Query: 115 GAEDSHKFVNGVLDKAAPVIRP 136 G +DS++F+NG+L + A + Sbjct: 117 GGDDSYRFINGLLGRVARDLDE 138 >UniRef50_Q0AXL7 Putative uncharacterized protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AXL7_SYNWW Length = 456 Score = 126 bits (319), Expect = 2e-28, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 53/131 (40%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 +AR A + +Y + L D+ D E++ G +LD +++ Sbjct: 11 KARIMAAEIVYEVMERGAFANLALAKALRNSDLSAADRHLLTEIVNGTVRMIKHLDWVLE 70 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 +L +++ ++LR ALY+L + VP +N+A+E+++ N VL Sbjct: 71 LFLHSPIKKQNPYLLSILRTALYQLMFLAKVPDYALVNDAVEISRQKMGAKMAGVSNAVL 130 Query: 128 DKAAPVIRPNK 138 + K Sbjct: 131 RNIIRKLDKIK 141 >UniRef50_Q836W8 N utilization substance protein B homolog n=39 Tax=Lactobacillales RepID=NUSB_ENTFA Length = 154 Score = 126 bits (318), Expect = 2e-28, Method: Composition-based stats. Identities = 46/143 (32%), Positives = 73/143 (51%), Gaps = 10/143 (6%) Query: 5 ARRRARECAVQALYSWQLS-QNDIADVEYQFLA-------EQDVKDVDVLYFRELLAGVA 56 R RE A+QAL+ + D LA +D +D+ Y L+ GV Sbjct: 11 TRHEIREKALQALFPLDFNADLTKQDAIDYALAYDNREIVSEDGEDLVPTYLDLLVGGVC 70 Query: 57 TNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 + A LD ++ +L + ++ L +++ +LR+A++E+ SDVP VA+NEA+EL+K + Sbjct: 71 SRKAELDEVITNHLGNNWSMQRLAKIDIVILRLAIFEMLYVSDVPNIVALNEAVELSKKY 130 Query: 115 GAEDSHKFVNGVLDKAAPVIRPN 137 + S KFVNGVL I Sbjct: 131 SDDRSRKFVNGVLSNVMKEIDSE 153 >UniRef50_C1I679 NusB antitermination factor n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I679_9CLOT Length = 134 Score = 126 bits (318), Expect = 2e-28, Method: Composition-based stats. Identities = 49/134 (36%), Positives = 80/134 (59%), Gaps = 3/134 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQD--VKDVDVLYFRELLAGVATNTAY 61 R+R+RE A++ L+ LS+N + + F+ + + +K +D+ Y + +LA V N Sbjct: 1 MNRKRSREIAMELLFGMTLSKNTLEETIETFIEDYEMNLKTIDLEYIKGILAKVEENITV 60 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D ++ L+ ++ + +V ++LR+A+ E+ DVP KVAINEAIEL K + E S Sbjct: 61 IDQKIEEALTNWKIDRVSKVNISILRLAIAEMLYVEDVPEKVAINEAIELTKKYSDEKSV 120 Query: 121 KFVNGVLDKAAPVI 134 FVNGVLDKA + Sbjct: 121 SFVNGVLDKAFKSL 134 >UniRef50_B0CL95 N utilization substance protein B homolog n=42 Tax=Alphaproteobacteria RepID=NUSB_BRUSI Length = 171 Score = 126 bits (318), Expect = 2e-28, Method: Composition-based stats. Identities = 47/146 (32%), Positives = 71/146 (48%), Gaps = 10/146 (6%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQF--------LAEQDVKDVDVLYFRELLAGV 55 R AR A QALY ++ + +V ++ + D D +FR ++AGV Sbjct: 18 NKRGVARLAAAQALYQMDVAGTGVMEVVAEYEAFRLGKEVDGTQYLDADPQWFRAIVAGV 77 Query: 56 ATNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKS 113 + LD ++ L L L +A+LR +EL R DVP V ++E +++AK+ Sbjct: 78 VEDQLKLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELKARKDVPTAVIVSEYVDIAKA 137 Query: 114 FGAEDSHKFVNGVLDKAAPVIRPNKK 139 F ED K VN VLD+ A VIR + Sbjct: 138 FYTEDEPKLVNAVLDRLALVIRGESR 163 >UniRef50_UPI0001BC34B4 sun protein n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=UPI0001BC34B4 Length = 443 Score = 126 bits (318), Expect = 2e-28, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 49/130 (37%), Gaps = 1/130 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNTAYLDGLMKP 68 R + AL V + L + + ++D + + G LD ++ Sbjct: 8 RNIILDALIEINEKDRFTHIVLPEVLKKYQYLDNIDRSFISRTILGTVERKITLDYIINL 67 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 + + ++ V + +LR++ Y+L V NEA+ L+ G FVNGVL Sbjct: 68 FSKTPVNKMKPVIRNILRMSTYQLIYMEGVKDFAVCNEAVRLSVKKGFTALKGFVNGVLR 127 Query: 129 KAAPVIRPNK 138 A + Sbjct: 128 TIAREKNKIE 137 >UniRef50_C5NYN0 Ribosomal RNA small subunit methyltransferase B n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NYN0_9BACL Length = 441 Score = 126 bits (318), Expect = 2e-28, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 3/125 (2%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR A + LY+ ++ + V++ D + E++ G N YL+ ++K Sbjct: 6 ARHIAYEVLYTIIQEDGYSNITLNKYFNQYKVEEQDKRFISEVVYGSIKNKLYLEHILKS 65 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 Y + K +L +++Y+L P I+EA++L K + KFVNG+L Sbjct: 66 YSKG---RVKPKVKVILLMSIYQLLYMDKTPNFAVIDEAVKLGKKIAGNITGKFVNGILR 122 Query: 129 KAAPV 133 Sbjct: 123 NIERN 127 >UniRef50_B0NZC1 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0NZC1_9CLOT Length = 167 Score = 126 bits (318), Expect = 2e-28, Method: Composition-based stats. Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 6/140 (4%) Query: 1 MKPAARRRARECAVQALYSWQL--SQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATN 58 MK R RE + L+ + + VE F +++ + E + + Sbjct: 31 MK---RSEVREHIFRILFCVEFCEKEEFEDQVELYFHGHENINEKTQKEITEKTENLIEH 87 Query: 59 TAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 +D + + + LE LG+ E ++LR+A YE+ VP KVAINEA+ELAK + E Sbjct: 88 LDEIDEQISAHTNAWNLERLGKAELSILRLATYEILLDEQVPRKVAINEAVELAKKYCNE 147 Query: 118 DSHKFVNGVLDKAAPVIRPN 137 + F+NGVL K + Sbjct: 148 KAAPFINGVLSKIGQDMDEE 167 >UniRef50_B0SB76 N utilization substance protein B homolog n=6 Tax=Leptospira RepID=NUSB_LEPBA Length = 140 Score = 126 bits (318), Expect = 2e-28, Method: Composition-based stats. Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 1/131 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 ++R R R A+ LY L D ++ + + Y L+ GV N +D Sbjct: 2 SSRHRGRSLALMCLYQIDLVGTDPDRAMKFDWYDKKITREEKDYAVFLVKGVVENRKAID 61 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 L+K Y L + V + +LR+++ L K + V INEA+EL K F E+S +F Sbjct: 62 TLIKKYSENWELSRISVVNRCILRLSILSLQKEPFLAAPVVINEAVELTKEFETEESAQF 121 Query: 123 VNGVLDKAAPV 133 +NG+LD Sbjct: 122 INGLLDAFYKK 132 >UniRef50_A6LU43 N utilization substance protein B homolog n=6 Tax=Clostridium RepID=NUSB_CLOB8 Length = 133 Score = 126 bits (317), Expect = 2e-28, Method: Composition-based stats. Identities = 47/133 (35%), Positives = 78/133 (58%), Gaps = 3/133 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLA--EQDVKDVDVLYFRELLAGVATNTAY 61 R+ +RE A++ L+ LS++ + D F+ E D+K++D+ Y +++L GV N Sbjct: 1 MNRKLSREKAMELLFGMTLSKDTMEDAVEAFVENYEGDIKEIDLTYVKQVLIGVNNNKEA 60 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D +++ L +E + +V ++LRIA YEL +VP VAINEA+E+ + + E S Sbjct: 61 IDKVIQENLHNWKIERISKVNLSILRIATYELLYDKEVPRGVAINEALEITRRYSDEKSV 120 Query: 121 KFVNGVLDKAAPV 133 F+NGVLDK Sbjct: 121 SFINGVLDKIKQD 133 >UniRef50_B0PFT6 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PFT6_9FIRM Length = 450 Score = 126 bits (317), Expect = 3e-28, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 51/132 (38%), Gaps = 4/132 (3%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK AR A QAL + + + + + + + L V Sbjct: 25 MKK----DARYTAAQALLRMESAGAYSNLTIDSLIEKNGLDAREGAFAAALFYTVLERRL 80 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D ++ Y +R L L + LR+ + +L V A++E++ L ++ G + Sbjct: 81 TIDHVLAAYCARGLASLSKPVLQTLRLGVCQLVWMDGVDDYAAVSESVNLTRALGCAKAS 140 Query: 121 KFVNGVLDKAAP 132 FVNGVL Sbjct: 141 GFVNGVLRAFLR 152 >UniRef50_Q2LRX5 16S rRNA m(5)C 967 methyltransferase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LRX5_SYNAS Length = 471 Score = 126 bits (317), Expect = 3e-28, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 49/130 (37%), Gaps = 2/130 (1%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDV-DVLYFRELLAGVATNTAYLDGLMKP 68 R AV+ L + + FL + + D L+ G LD +++ Sbjct: 25 RSLAVEILDRIDTTGAFAEPLLDAFLRDHLLDSAPDRHLLTSLVYGTLRMRGRLDWIIQQ 84 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 + + +LR ALY+ +P ++EA+ELAK K VN +L Sbjct: 85 LYQGRFSSMQGGIRNILRTALYQFLFMERIPAFALVDEAVELAKLRYPGRE-KLVNALLR 143 Query: 129 KAAPVIRPNK 138 A + N+ Sbjct: 144 NAVRKVSANE 153 >UniRef50_Q1IIS1 Sun protein n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IIS1_ACIBL Length = 432 Score = 126 bits (317), Expect = 3e-28, Method: Composition-based stats. Identities = 33/128 (25%), Positives = 54/128 (42%), Gaps = 1/128 (0%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 +R A L + Q +++ + D+ D EL+ G + LD L+ Sbjct: 6 SRATAFDILLRVERDQAFASELLHSDR-LNDLSAPDRGLATELVMGTLRWQSTLDALVAT 64 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 S+ L +L LR+A Y+L +P A+NE++EL K + F N VL Sbjct: 65 QSSQPLRKLDIEVLIALRLAAYQLQFLDRIPANAAVNESVELVKRARKRSAVPFANAVLR 124 Query: 129 KAAPVIRP 136 K + + R Sbjct: 125 KISKLPRE 132 >UniRef50_D0WMY6 Ribosomal RNA small subunit methyltransferase B n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WMY6_9ACTO Length = 534 Score = 126 bits (317), Expect = 3e-28, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 2/126 (1%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR A + L + V +A + +D Y L G D ++ Sbjct: 69 ARLVAFEVLRAVDEDDAYANLVLPVEIARAGLNKLDAAYATNLCYGTLRMRGRWDAIISR 128 Query: 69 YLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 R + ++ +LR+ +L + P AI+E + +A++F + + FVN VL Sbjct: 129 CAKGRRIYDIDPPVLDLLRMGCEQLLAM-ETPPHAAIHETVVIARNFFGQGTGGFVNAVL 187 Query: 128 DKAAPV 133 + + Sbjct: 188 RRISEK 193 >UniRef50_Q0ABQ3 N utilization substance protein B homolog n=2 Tax=Ectothiorhodospiraceae RepID=NUSB_ALHEH Length = 178 Score = 126 bits (317), Expect = 3e-28, Method: Composition-based stats. Identities = 54/134 (40%), Positives = 73/134 (54%), Gaps = 17/134 (12%) Query: 18 YSWQLSQNDIADVEYQFLA-----------------EQDVKDVDVLYFRELLAGVATNTA 60 Y WQ++ D+ +E Q L +D YFR LL GV Sbjct: 29 YQWQMTGQDLGAIEAQHLEIDPEEPPVEAGDDEHYPRYPHDGLDRPYFRALLHGVPARLN 88 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD ++P L R L L +EKA+LR+ +ELS+R D P++V INEA+ LAK FGAE SH Sbjct: 89 DLDQALEPLLDRPLRTLDPLEKALLRLGAWELSERMDTPWRVIINEAVNLAKRFGAEQSH 148 Query: 121 KFVNGVLDKAAPVI 134 +++NGVLDK A + Sbjct: 149 RYINGVLDKLARGL 162 >UniRef50_B1ZVQ6 NusB antitermination factor n=3 Tax=Verrucomicrobia RepID=B1ZVQ6_OPITP Length = 147 Score = 126 bits (317), Expect = 3e-28, Method: Composition-based stats. Identities = 39/141 (27%), Positives = 74/141 (52%), Gaps = 6/141 (4%) Query: 4 AARRRARECAVQALYSWQLS-QNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 A RR R A+Q L++W ++ ++A+ F + + EL+ GV ++ + Sbjct: 7 AQRRDGRVAALQYLFAWSMNRPRNLAEDLRVFFENMEQPRDHYAFGEELIHGVIEHSDDI 66 Query: 63 DGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D +K + + +++ +LR+A++E+ R D+P V+INEAI+L+K F D+ + Sbjct: 67 DARIKGLAHNWEFDRIAKIDLTILRLAIFEILHRKDIPPVVSINEAIDLSKQFSNADAKR 126 Query: 122 FVNGVLDK----AAPVIRPNK 138 F+NG+LD+ R + Sbjct: 127 FINGILDRLKDQVGRDARKAE 147 >UniRef50_D2EIA0 Transcription antitermination factor NusB n=1 Tax=Pediococcus acidilactici 7_4 RepID=D2EIA0_PEDAC Length = 134 Score = 125 bits (316), Expect = 3e-28, Method: Composition-based stats. Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 4/132 (3%) Query: 5 ARRRARECAVQALYSWQLS-QNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 R + RE A + +++ ++ D +++ Q L E DV + L+ GV N + ++ Sbjct: 4 NRHQMRESAFKMIFAQSVNPDADPEELKKQVLEEFHETDVADPFLDNLVTGVQENVSSIN 63 Query: 64 GLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 + L + L ++ +L+I YE+ ++VP VAINEA+ELAK + E + K Sbjct: 64 ETIGKELKAGWTVNRLANPDRVILQIGTYEIKH-TEVPNNVAINEALELAKKYTDEKARK 122 Query: 122 FVNGVLDKAAPV 133 F+NGVL A Sbjct: 123 FINGVLSNVAKD 134 >UniRef50_D1KDZ6 Transcription termination factor n=1 Tax=uncultured SUP05 cluster bacterium RepID=D1KDZ6_9GAMM Length = 142 Score = 125 bits (316), Expect = 3e-28, Method: Composition-based stats. Identities = 53/136 (38%), Positives = 82/136 (60%), Gaps = 1/136 (0%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 ++R+RE VQA+Y + +S ++ +E QFL +++ + +F L + N L Sbjct: 4 KTPKQRSRERVVQAVYQYLVSGGEVLQIEQQFLNQKE-GKISKAFFSNLFINILKNRIEL 62 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 D L+ P +SR +ELG VE AVL + +YEL +VPYKV INEA+E+AK +GAE + K Sbjct: 63 DELIAPTISRETDELGSVEHAVLYLGVYELQNSIEVPYKVVINEALEIAKLYGAEGAFKL 122 Query: 123 VNGVLDKAAPVIRPNK 138 +N LD+ A +R + Sbjct: 123 INSSLDQLAKDLRELE 138 >UniRef50_UPI0001B583AE RNA-binding Sun protein n=2 Tax=Actinomycetales RepID=UPI0001B583AE Length = 437 Score = 125 bits (316), Expect = 4e-28, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 52/145 (35%), Gaps = 16/145 (11%) Query: 4 AARRRAR-----------ECAVQALYSWQLSQNDIADVEYQFLAEQD----VKDVDVLYF 48 ++RRR R A AL + V L E D Sbjct: 12 SSRRRGRPHRAPRKDPVRVLAFDALRAVDERDAYANLVLPALLREAREKGGFDARDAALA 71 Query: 49 RELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAI 108 EL+ G D ++ + R L E+ VL + ++L + +P A++ + Sbjct: 72 TELVYGTLRGRGTYDAIIAACVDRPLREVDPPVLDVLSLGAHQLL-GTRIPTHAAVSATV 130 Query: 109 ELAKSFGAEDSHKFVNGVLDKAAPV 133 ELA+ + +FVN VL + + Sbjct: 131 ELARVVLGDGRSRFVNAVLRRISRN 155 >UniRef50_B5YHQ2 N utilization substance protein B homolog n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=NUSB_THEYD Length = 151 Score = 125 bits (315), Expect = 4e-28, Method: Composition-based stats. Identities = 41/144 (28%), Positives = 80/144 (55%), Gaps = 14/144 (9%) Query: 1 MKPAARRRARECAVQALYSWQLSQN--------DIADVEYQFLAE--QDVKDVDVLYFRE 50 MK RR+ARE +Q LY+ ++++N + + +F ++ + + Sbjct: 1 MK---RRKAREYVLQFLYACEMNENTQKICNYNFLQEEIEKFWERNYEEQNSDIKSFANQ 57 Query: 51 LLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIE 109 L+ G + +D +++ Y + +E + ++K +LR ++YE+ R D+PY+V INEA+E Sbjct: 58 LIEGTIEHIDIIDKIIQKYADKWNIERMITIDKNILRFSIYEILYRQDIPYQVTINEAVE 117 Query: 110 LAKSFGAEDSHKFVNGVLDKAAPV 133 +AK + ++S F+NG+LD+ A Sbjct: 118 IAKKYSTKESAAFINGILDRIAKE 141 >UniRef50_A3EVA3 Transcription antitermination factor (NusB) n=2 Tax=Leptospirillum sp. Group II RepID=A3EVA3_9BACT Length = 168 Score = 125 bits (315), Expect = 4e-28, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 64/133 (48%), Gaps = 5/133 (3%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLM 66 +AR +Q+L++ + F + L+ L + + +D ++ Sbjct: 22 HKARIEVLQSLFAGEYLPGGP----PPFTLTSTLPSQARLFRDRLGGAIREHREEIDTVI 77 Query: 67 KPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 + L+ + +V++ +LR+ + E+ +VP++V ++E++ELA F ++ +F+NG Sbjct: 78 SRFSVDWTLDRMSRVDRNILRMGICEILFEPEVPFRVTVDESLELAHQFSEPEAVRFING 137 Query: 126 VLDKAAPVIRPNK 138 +L + + P K Sbjct: 138 ILHRVGTELNPEK 150 >UniRef50_D2B6M0 Fmu, rRNA SAM-dependent methyltransferase:Nop2p n=2 Tax=Actinomycetales RepID=D2B6M0_STRRD Length = 515 Score = 125 bits (315), Expect = 4e-28, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 47/126 (37%), Gaps = 1/126 (0%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R AR A L + + L E+ + D EL G D + Sbjct: 53 RDEARNAAYDLLRAVDERDAYANLLMPALLRERRLSGRDAGLATELAYGTLRGLGTYDEV 112 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 + R E+L +R+ +++L K + VP A+ ++L + + K+ N Sbjct: 113 IAACSDRAPEDLDPPLLDAIRLGVHQLLK-TRVPPHAAVGTTVDLVRLRVGTGASKYANA 171 Query: 126 VLDKAA 131 VL K A Sbjct: 172 VLRKVA 177 >UniRef50_Q0F2C5 Transcription antitermination protein NusB n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F2C5_9PROT Length = 145 Score = 125 bits (315), Expect = 5e-28, Method: Composition-based stats. Identities = 51/139 (36%), Positives = 81/139 (58%), Gaps = 4/139 (2%) Query: 4 AARRRARECAVQALYSWQLSQND---IADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 A R +ARE ++ LY+W +Q D I ++ L ++ D D Y RE + G+ +T Sbjct: 2 ANRHQARESVLETLYAWSSAQQDSGMIPELLASRLQHEERADQDESYLREAVYGITDHTD 61 Query: 61 YLDGLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 LD L+K + R L + Q+E V+R+A++E+ R ++PY+V INEA+EL + + E Sbjct: 62 ALDELIKTAVRGRSLRSVAQIEINVIRLAVWEMQNRLEIPYRVIINEALELTRDYAGEPP 121 Query: 120 HKFVNGVLDKAAPVIRPNK 138 F+NGVLD A +RP + Sbjct: 122 RGFINGVLDNLAKQLRPAE 140 >UniRef50_A5EVR1 Transcription antitermination factor NusB n=2 Tax=Cardiobacteriaceae RepID=A5EVR1_DICNV Length = 145 Score = 125 bits (314), Expect = 6e-28, Method: Composition-based stats. Identities = 53/131 (40%), Positives = 76/131 (58%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R +AR +Q LY WQ+ +D V+ + + ++D YF A + TNT LD Sbjct: 14 RSQARRQLLQGLYQWQIIGDDAEIVKENQMIDARAGEIDHDYFDAAWAYITTNTEQLDCC 73 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 ++ R + L VE A+L I +YEL++R D+ V INEA+ELAK FG++D +KFVNG Sbjct: 74 AADFIRRNMATLDPVEHAILWIGIYELTQRIDIHQNVIINEAVELAKQFGSDDGYKFVNG 133 Query: 126 VLDKAAPVIRP 136 VLD+ A R Sbjct: 134 VLDQCAKRHRA 144 >UniRef50_A8ST69 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A8ST69_9FIRM Length = 452 Score = 125 bits (314), Expect = 6e-28, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 45/125 (36%), Gaps = 1/125 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNTAYLDGLMKP 68 RE + L + + L + D Y ++ GV LD ++ Sbjct: 6 REVVLSILLDIEKNHTFSNTALGTALRANQFMSKQDRAYITRMVEGVTEKRMRLDYIVNQ 65 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 + + + + + VLR+ YE+ V A N ++LA G FVNGVL Sbjct: 66 FSKTKINKCKPLIRCVLRMGTYEIFYMDSVQDHTACNLCVKLAADHGFGSLRGFVNGVLR 125 Query: 129 KAAPV 133 A Sbjct: 126 NIARN 130 >UniRef50_Q03FZ6 N utilization substance protein B homolog n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=NUSB_PEDPA Length = 133 Score = 125 bits (314), Expect = 6e-28, Method: Composition-based stats. Identities = 38/131 (29%), Positives = 72/131 (54%), Gaps = 4/131 (3%) Query: 5 ARRRARECAVQALYSWQLS-QNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 R + RE A + +++ + D+++++ Q L E + + ++L+ GV+ N ++ Sbjct: 4 NRHQIRESAFKIIFAKSANPDADLSELQDQVLEEFHETEAPDQFLKDLVMGVSLNLEAIN 63 Query: 64 GLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 + L ++ L ++ +L++ YE+ ++ P KVAINEA+ELAK + ED+ K Sbjct: 64 ETISGELKKGWTVKRLESPDRVILQMGTYEIKY-TETPDKVAINEALELAKKYTDEDARK 122 Query: 122 FVNGVLDKAAP 132 F+NGVL A Sbjct: 123 FINGVLSNIAK 133 >UniRef50_A6NUZ5 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NUZ5_9BACE Length = 223 Score = 125 bits (314), Expect = 6e-28, Method: Composition-based stats. Identities = 36/153 (23%), Positives = 60/153 (39%), Gaps = 15/153 (9%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDV--------------KDVDVLY 47 + R ARE AV + + ++ L Y Sbjct: 46 RNMTRTNAREIAVHLTFELSFTNQTADELLDTALTRATFALIGEEEPLYAEYPNAKQREY 105 Query: 48 FRELLAGVATNTAYLDGLMKPY-LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINE 106 EL+ GV + LD + Y + + ++ AV+R+A+YE+ DVP AINE Sbjct: 106 ISELVRGVYFHCPELDDYISRYAIGWTFSRIPRIAVAVMRVAMYEILYMQDVPNAAAINE 165 Query: 107 AIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 A+E+AK + + F+NG+L ++ Sbjct: 166 ALEIAKGYETPEVVSFINGILGSFVRKESIPER 198 >UniRef50_Q38XV0 N utilization substance protein B homolog n=9 Tax=Lactobacillus RepID=NUSB_LACSS Length = 142 Score = 125 bits (314), Expect = 6e-28, Method: Composition-based stats. Identities = 45/141 (31%), Positives = 70/141 (49%), Gaps = 9/141 (6%) Query: 1 MKPAARRRARECAVQALYSWQLSQN-DIADVEYQFLAEQDVKDVDV------LYFRELLA 53 M R + R+ A Q L++ +Q+ ++ D L +V Y L++ Sbjct: 1 MPNFNRHQIRQAAFQVLFTLNANQSLELEDAYQAVLTMDQFDAEEVTPVEVPAYLAFLVS 60 Query: 54 GVATNTAYLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELA 111 GV N A LD + PYL L L + + +LR+ L+E+ ++ P KVA+NEA+ELA Sbjct: 61 GVTENQAALDAALTPYLKKGWQLSRLAKPDLIILRLGLFEMQNSTEAPAKVALNEALELA 120 Query: 112 KSFGAEDSHKFVNGVLDKAAP 132 K F + + F+NGVL K Sbjct: 121 KQFTDDQAKGFINGVLSKFVE 141 >UniRef50_A6DTV7 NusB antitermination factor n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DTV7_9BACT Length = 156 Score = 124 bits (313), Expect = 7e-28, Method: Composition-based stats. Identities = 41/149 (27%), Positives = 71/149 (47%), Gaps = 11/149 (7%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAE----------QDVKDVDVLYFRE 50 +K R R+ A+Q LY +++ + + E+ + + + RE Sbjct: 5 IKRNPRSLGRKWALQYLYQSDIAKLEFQEEEFALFIDQIENAPSAPNEHESSKGFAFARE 64 Query: 51 LLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIE 109 ++ GV +D + ++ + ++ VLRIA++EL + V +NEA+E Sbjct: 65 IIQGVLDKVKEIDAYITEEAKNWKIDRMATTDRNVLRIAVFELMEIKSNHPVVIVNEAVE 124 Query: 110 LAKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 LAK+FG DS KFVNG+ D A +RP + Sbjct: 125 LAKTFGNTDSFKFVNGIGDTLARKLRPEE 153 >UniRef50_A8SLL0 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SLL0_9FIRM Length = 434 Score = 124 bits (313), Expect = 8e-28, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 60/127 (47%), Gaps = 2/127 (1%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 R+ A++ L + ++ ++ + + +++ D+D + RE++ G N YLD ++K Sbjct: 1 MRKLAIEILCEIKDENSNSTNLLNK--STKNISDLDSKFLREIVYGTLENRIYLDYIIKK 58 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 +++ +LRI++Y++ +P INEA+ L K F + FVNG L Sbjct: 59 LCKLRIKKFNPYILNILRISIYQIIFMDKIPEFAIINEAVNLTKVFKLKKFSSFVNGSLR 118 Query: 129 KAAPVIR 135 Sbjct: 119 NFLRNKE 125 >UniRef50_C8PUW0 NusB antitermination factor n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PUW0_9GAMM Length = 186 Score = 124 bits (313), Expect = 8e-28, Method: Composition-based stats. Identities = 47/132 (35%), Positives = 74/132 (56%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLM 66 R+AR VQ LY W L+ N ++E +E + V + Y+ ELL+ + + L + Sbjct: 29 RKARRFVVQGLYEWLLTGNPSHEIEAHTRSENAMHTVHLGYYHELLSKIIEQSDDLIAYI 88 Query: 67 KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGV 126 L+R L +VE+AVL + YE+ + +VPYKV I+EAI+L FG+ D +K ++ V Sbjct: 89 DSLLNRPWTRLDKVEQAVLLVGAYEMKQHLEVPYKVVIDEAIQLNTHFGSSDGYKMIHVV 148 Query: 127 LDKAAPVIRPNK 138 +DK A R + Sbjct: 149 MDKIAKDARMPE 160 >UniRef50_Q2W4S5 N utilization substance protein B homolog n=3 Tax=Magnetospirillum RepID=NUSB_MAGSA Length = 156 Score = 124 bits (313), Expect = 8e-28, Method: Composition-based stats. Identities = 40/143 (27%), Positives = 65/143 (45%), Gaps = 8/143 (5%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQ------DVKDVDVLYFRELLAGVAT 57 A R AR AVQ LY +++ D + + D D +++ GV+ Sbjct: 9 AKRSAARLAAVQVLYQMEMTGADTERALQDAKDRRAAEPKGRMADPDNSLLNQVVRGVSA 68 Query: 58 NTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG 115 +DG + L +E L V +A++R +ELS R P +V I+E +++A +F Sbjct: 69 QLEDIDGHVGRALSGDWTVERLEAVLRAIVRAGAWELSARPQTPARVCISEWVDVAHAFY 128 Query: 116 AEDSHKFVNGVLDKAAPVIRPNK 138 + VNGVLD A +R + Sbjct: 129 SGPEPGLVNGVLDHLAQTLRGGE 151 >UniRef50_C5VC90 Transcription antitermination factor NusB n=2 Tax=Corynebacterium matruchotii RepID=C5VC90_9CORY Length = 312 Score = 124 bits (313), Expect = 9e-28, Method: Composition-based stats. Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 6/132 (4%) Query: 14 VQALYSWQLSQNDIADVEYQFLAEQDVK----DVDVLYFRELLAGVATNTAYLDGLMKPY 69 V LY + D + + V Y E++AGVA +D ++ Y Sbjct: 34 VDVLYEAEARDVDPVAIVEDRINLARVDITLVAPIAAYTSEIIAGVAEELNRIDDVIAEY 93 Query: 70 L--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 L + L + V++A+LR+A++E+ DVP K A++EA+ELA + + ++N VL Sbjct: 94 LAENWELSRISAVDRAILRVAVWEMIFNPDVPVKTALSEAVELASQYSGASAPAYINAVL 153 Query: 128 DKAAPVIRPNKK 139 D I ++ Sbjct: 154 DSVVKNIDDLRR 165 >UniRef50_D0LLT9 Sun protein n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LLT9_HALO1 Length = 501 Score = 124 bits (312), Expect = 9e-28, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 45/127 (35%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R+ A + L L + D EL G LD + Sbjct: 45 RDVAHRVLRQVAKEGAFATLALGAALKSSGLDARDRALVTELCYGSLRQQMRLDRALAAL 104 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 R L +L ++LR+A YE+ VP ++N A+ A+ G + F NGVL Sbjct: 105 TPRGLGKLDAATLSILRVAAYEILFLERVPAHASVNSAVRAARRLGGQRFAGFANGVLRT 164 Query: 130 AAPVIRP 136 A P Sbjct: 165 LAREGEP 171 >UniRef50_B0KA07 Sun protein n=11 Tax=Thermoanaerobacterales RepID=B0KA07_THEP3 Length = 444 Score = 124 bits (312), Expect = 1e-27, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 55/135 (40%), Gaps = 9/135 (6%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MKP RE A + L + + L Q++K++D + +EL+ GV Sbjct: 1 MKP------REIAYKILQEVLSKEAYANISFNKHLKGQELKEIDRGFTKELVFGVIERKY 54 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD ++ ++ + + + L + LY+L VP AINE + +AK Sbjct: 55 TLDFILSFFVKKAPDLKTMI---FLEMGLYQLLYMDKVPSYAAINETVNIAKKVLGIKRA 111 Query: 121 KFVNGVLDKAAPVIR 135 F+N VL Sbjct: 112 NFINAVLRNYDREKE 126 >UniRef50_C1ZLP1 Ribosomal RNA small subunit methyltransferase RsmB n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZLP1_PLALI Length = 754 Score = 124 bits (312), Expect = 1e-27, Method: Composition-based stats. Identities = 38/137 (27%), Positives = 62/137 (45%), Gaps = 1/137 (0%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 M+ A R ARE A L + I +V Q + + D EL+ G+ + Sbjct: 295 MQLLAPRTARELAFNVLEAHHAGNKHIGEVFDQAVDRTTLSPSDRRLAYELICGIVRRQS 354 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 L L+ + R +E L + + +++I LY++ +P A++E +ELAK Sbjct: 355 TLQALLMSLVHRQMETLERPLQTIIKIGLYQIFLCQGIPQHAAVHETVELAKR-ANLRWG 413 Query: 121 KFVNGVLDKAAPVIRPN 137 FVNGVL A ++ N Sbjct: 414 GFVNGVLRSAIQLMTEN 430 >UniRef50_Q1JF82 N utilization substance protein B homolog n=57 Tax=Streptococcus RepID=NUSB_STRPD Length = 150 Score = 123 bits (311), Expect = 1e-27, Method: Composition-based stats. Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 9/144 (6%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVL------YFRELLAGVAT 57 +RR RE A QAL++ ++ ++ V D + L+ GV Sbjct: 7 NSRRDLRERAFQALFNIEM-GAELLAASQFAYGYDKVTREDAQVLELPIFLLSLVTGVNN 65 Query: 58 NTAYLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG 115 + LD L+ +L LE L +K +LR+ L+E+ + P +VA+NE IE+AK + Sbjct: 66 HKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEVAKKYS 125 Query: 116 AEDSHKFVNGVLDKAAPVIRPNKK 139 E S KF+NG+L + K Sbjct: 126 DETSAKFINGLLSQYVSEAPSANK 149 >UniRef50_Q6A8H8 N utilization substance protein B homolog n=2 Tax=Propionibacterium acnes RepID=NUSB_PROAC Length = 261 Score = 123 bits (311), Expect = 1e-27, Method: Composition-based stats. Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 5/130 (3%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 + R +AR+ A+ L+ L D +V + + +L+ GVA LD Sbjct: 37 STRSKARKQALDILFEADLIGTDPLEVLAA--RPGVFTNPVRPFAADLVRGVAATQVGLD 94 Query: 64 GLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 ++ LS L + +V++ + R+ +E+ +D P I+EAIEL++ F +DS Sbjct: 95 SVLTDCLSEGWTLARMPRVDRILARLGAFEILH-TDTPNPAVISEAIELSEEFSTDDSAP 153 Query: 122 FVNGVLDKAA 131 F+NG+L Sbjct: 154 FLNGLLGAVI 163 >UniRef50_A7BCC1 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BCC1_9ACTO Length = 490 Score = 123 bits (311), Expect = 1e-27, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 55/140 (39%), Gaps = 8/140 (5%) Query: 7 RRA---RECAVQALYSWQLSQNDIADVEYQFLA----EQDVKDVDVLYFRELLAGVATNT 59 R+A R A L+ + + + L + D D + EL+ G Sbjct: 14 RKADEPRRIAYDVLHEVETQGAFTNIILPKALRQARRDGHFSDRDAAFTSELVHGTLRAI 73 Query: 60 AYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 LD ++ ++ R L +L VLR+ ++L VP A++ +++A+ + Sbjct: 74 GRLDWVISRHIDRPLADLDPRALVVLRMGAHQLLDM-RVPDHAAVSATVDVAREHLTDGP 132 Query: 120 HKFVNGVLDKAAPVIRPNKK 139 +FVN VL ++ Sbjct: 133 VRFVNAVLRSITREDPSERE 152 >UniRef50_B0VJ63 N utilization substance protein B n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VJ63_9BACT Length = 153 Score = 123 bits (310), Expect = 1e-27, Method: Composition-based stats. Identities = 46/150 (30%), Positives = 72/150 (48%), Gaps = 15/150 (10%) Query: 4 AARRRARECAVQALYSWQLSQ-----------NDIADVEYQFLAEQDVKDVDV--LYFRE 50 RR+ARE AVQ LYS + S+ N+ D+ + ++ + E Sbjct: 2 GQRRKAREMAVQCLYSLEFSEVEKDYREYGLLNEYPDILLSLAEAEHIQPNSPVYAFADE 61 Query: 51 LLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIE 109 L+ N ++ + LE++ +++++L +A YEL +D P V INEAIE Sbjct: 62 LVKNTIINIEQVESEIDKLSDNWELEDIALLDRSILCLAAYELLF-TDTPAPVVINEAIE 120 Query: 110 LAKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 +AK F +E S KF+NG+LD I K Sbjct: 121 IAKKFSSEASGKFINGILDALNKEIIQKGK 150 >UniRef50_Q0APG4 N utilization substance protein B homolog n=3 Tax=Alphaproteobacteria RepID=NUSB_MARMM Length = 160 Score = 123 bits (310), Expect = 2e-27, Method: Composition-based stats. Identities = 44/136 (32%), Positives = 65/136 (47%), Gaps = 10/136 (7%) Query: 13 AVQALYSWQLSQNDIADVEYQFLAE--------QDVKDVDVLYFRELLAGVATNTAYLDG 64 AVQALY ++ + V +F + + D +F L+AGV A +D Sbjct: 24 AVQALYQMEIGGLGASAVIREFREHRFGACGEAPEFVEADEDFFESLVAGVVERQADVDP 83 Query: 65 LMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 M L LE L +A+LR+ +EL R DVP +V I+E IE+A +F KF Sbjct: 84 AMDALLADKWRLERLDATVRAILRVGGFELLYRKDVPARVVIDEYIEVANAFFEGAEPKF 143 Query: 123 VNGVLDKAAPVIRPNK 138 +N D+ A RP++ Sbjct: 144 INAAFDRCARGARPDE 159 >UniRef50_C5CBJ2 Ribosomal RNA small subunit methyltransferase RsmB n=10 Tax=Micrococcineae RepID=C5CBJ2_MICLC Length = 543 Score = 123 bits (310), Expect = 2e-27, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 50/135 (37%), Gaps = 5/135 (3%) Query: 3 PAARRR----ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATN 58 P+ R R AR A + S V + + + D + EL G Sbjct: 55 PSQRSRTADPARRVAFGVVRSVHAEDAYANLVLPARIRQARLDRRDAGFATELAYGTLRG 114 Query: 59 TAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 D ++ + R LE++ LR+ ++L VP A++ + L ++ Sbjct: 115 LGLYDAILTRCVDRPLEKIDPPVLDALRLGAHQLLGM-RVPAHAALDATVSLVRAEVGAG 173 Query: 119 SHKFVNGVLDKAAPV 133 + FVN VL + A Sbjct: 174 ASGFVNAVLRRIAER 188 >UniRef50_Q6NH08 N utilization substance protein B homolog n=1 Tax=Corynebacterium diphtheriae RepID=NUSB_CORDI Length = 182 Score = 123 bits (310), Expect = 2e-27, Method: Composition-based stats. Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 6/141 (4%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDV----LYFRELLAGVAT 57 + +R +AR AV L+ ++ D + + + DV Y +E+++G A Sbjct: 12 RRGSRYKARRRAVDILFEAEMRDIDPVAIVEDRVVLSRLNGTDVNQVPSYTKEIVSGAAM 71 Query: 58 NTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG 115 LD L+ +L LE + V++A+LR++++EL DVP AI E +ELA + Sbjct: 72 ELDRLDELIAAHLAEDWSLERIMTVDRAILRVSVWELIFNPDVPLATAIIEGVELASEYS 131 Query: 116 AEDSHKFVNGVLDKAAPVIRP 136 + S +V+ +LD A I Sbjct: 132 TDVSPAYVHALLDSIAKNIDE 152 >UniRef50_B3WEW8 RRNA methylase (Putative) n=77 Tax=Bacilli RepID=B3WEW8_LACCB Length = 446 Score = 123 bits (310), Expect = 2e-27, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 50/128 (39%), Gaps = 2/128 (1%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R AV+ L + + D ++ GV + LD + P+ Sbjct: 7 RLLAVETLSRVTGQGGYSNLTLDHVINSHKLTPRDAGLLTNIVYGVIQHQLTLDFYLAPF 66 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 + +L + +L IA+Y+L VP + ++ E+AK G + KFV GVL Sbjct: 67 IKGR--KLDNWIRCLLDIAVYQLQYLDKVPARAVFFDSTEIAKKLGHQGIAKFVTGVLRN 124 Query: 130 AAPVIRPN 137 A P+ Sbjct: 125 AQRTGFPD 132 >UniRef50_D2R650 NusB antitermination factor n=2 Tax=Planctomycetaceae RepID=D2R650_9PLAN Length = 136 Score = 123 bits (310), Expect = 2e-27, Method: Composition-based stats. Identities = 52/134 (38%), Positives = 73/134 (54%), Gaps = 3/134 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVD-VLYFRELLAGVATNTAYL 62 A R RARE +Q LY L+ + V FL + DV+ V + R+LL GV L Sbjct: 2 ARRSRAREVVLQILYEDDLNPDRSIAVSDVFLRRRLGDDVELVDFARDLLRGVRGRRKEL 61 Query: 63 DGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D L++ L+ + ++ VLR+ YE+ + P +VAINEA+ELAK FGA S + Sbjct: 62 DVLLQQKADHWTLDRMAVTDRNVLRLGAYEILH-TQTPQRVAINEAVELAKRFGARQSPQ 120 Query: 122 FVNGVLDKAAPVIR 135 FVNG+LD+ R Sbjct: 121 FVNGILDRFLQKKR 134 >UniRef50_C8WZ45 NusB/RsmB/TIM44 n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WZ45_DESRD Length = 429 Score = 123 bits (309), Expect = 2e-27, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 50/131 (38%), Gaps = 1/131 (0%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR+ A+ L L ++ L ++ D EL+ GV + +L+ + Sbjct: 10 ARQAALSCLEGVLLRDQELQASLDGVLDSASLEPRDRALATELVYGVCRHKTHLETAITR 69 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 ++ L + +L +A YE+ +P +++ A+ K A N VL Sbjct: 70 FVH-PKTRLKPRLRLILSVAAYEMLYLDRIPAYASVDWAVNAVKKRVAVQRAGVANAVLR 128 Query: 129 KAAPVIRPNKK 139 + A + + Sbjct: 129 RLADDLHNRGR 139 >UniRef50_C2BWI2 Ribosomal RNA small subunit methyltransferase B n=3 Tax=Mobiluncus RepID=C2BWI2_9ACTO Length = 523 Score = 123 bits (309), Expect = 2e-27, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 49/130 (37%), Gaps = 2/130 (1%) Query: 2 KPAARRR-ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 + RR AR+ A QAL V + + D + EL+ G Sbjct: 38 RSKTRRDPARDVAFQALRRVDQDHAYANLVLPGLIERARLHRRDAAFATELVYGTLRLQG 97 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 D ++ R + L VLR+ ++++ + V A++ ++LA+ + Sbjct: 98 RYDAIIGLLSDRDIAALDSELVTVLRMGIHQILQM-RVEDYAAVDTMVDLARDRLSAGPA 156 Query: 121 KFVNGVLDKA 130 VN VL K Sbjct: 157 GMVNAVLRKV 166 >UniRef50_B9CP02 Transcription antitermination factor NusB n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CP02_9ACTN Length = 161 Score = 123 bits (309), Expect = 2e-27, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 68/139 (48%), Gaps = 7/139 (5%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVE--YQFLAEQDVKDVDVLYFRELLAGVATNT 59 K R AR A+Q L+ + + + +V L+E + Y +L G Sbjct: 4 KFFGRTLARSQALQLLFQAEQTNRTVEEVLQGEYVLSEGPLDP----YAEKLACGTDGIR 59 Query: 60 AYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 LD ++ Y + + V++ +L+++LYE+ + S+V + INE IEL+ ++ ++ Sbjct: 60 DDLDMILNAYSHGWSVSRMPSVDRNLLQLSLYEMLEVSEVDVSITINEVIELSHAYCGDE 119 Query: 119 SHKFVNGVLDKAAPVIRPN 137 S +F+NG+L + A I Sbjct: 120 SPRFINGILGRVAADIAEG 138 >UniRef50_C6XHS5 Transcription antitermination protein NusB n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XHS5_LIBAP Length = 170 Score = 122 bits (308), Expect = 3e-27, Method: Composition-based stats. Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 14/146 (9%) Query: 2 KPAARR-RARECAVQALYSWQLSQNDIADVEYQ-----FLAEQDVKDV------DVLYFR 49 K + RR AR AVQALY + ++ + F A+ ++ D+ +FR Sbjct: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 Query: 50 ELLAGVATNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEA 107 ++ GV ++D L+ L L + ++LR + EL + VP +V I+E Sbjct: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 Query: 108 IELAKSFGAEDSHKFVNGVLDKAAPV 133 + +A F D KF+N VLDK + Sbjct: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156 >UniRef50_C4DFR3 Transcription antitermination factor NusB n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DFR3_9ACTO Length = 147 Score = 122 bits (308), Expect = 3e-27, Method: Composition-based stats. Identities = 44/133 (33%), Positives = 64/133 (48%), Gaps = 5/133 (3%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDV---DVLYFRELLAGVATNTAY 61 ARR+AR+ AV LY + I V Y EL+ GVA Sbjct: 11 ARRKARKRAVDVLYEAEQRDEPIRRVLEDRRKLAVTDPQMPGIPEYTFELVDGVAEYLDE 70 Query: 62 LDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D ++ L L+ + V++ +LR+A +EL R DV VAI+EA+++A+ EDS Sbjct: 71 VDDVIARCLHSGWYLDRIAAVDRNILRVAAFELRYREDVDAAVAISEAVKIAEVLCGEDS 130 Query: 120 HKFVNGVLDKAAP 132 FVNGVL + Sbjct: 131 PAFVNGVLQSVSE 143 >UniRef50_A5VKQ4 Sun protein n=14 Tax=Lactobacillus RepID=A5VKQ4_LACRD Length = 449 Score = 122 bits (307), Expect = 4e-27, Method: Composition-based stats. Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 3/140 (2%) Query: 1 MKPA-ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNT 59 MK + ARE A+ AL + Q L + + D D ++ GV + Sbjct: 1 MKTKFQPQNARELALVALEGVVENGAYSNLQVDQLLKKYPLADKDRRLATNIIYGVLQHK 60 Query: 60 AYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 L+ + ++ + L K +L ALY+ VP +E+IE+AK G Sbjct: 61 LTLEYWLNGFIQG--KRLDPWVKTLLLSALYQYHYLERVPDWAVTDESIEIAKRRGNPGI 118 Query: 120 HKFVNGVLDKAAPVIRPNKK 139 KFV GVL P+ + Sbjct: 119 RKFVTGVLHAILRKGLPDLR 138 >UniRef50_Q8DSE9 N utilization substance protein B homolog n=5 Tax=Streptococcus RepID=NUSB_STRMU Length = 142 Score = 122 bits (307), Expect = 4e-27, Method: Composition-based stats. Identities = 39/131 (29%), Positives = 70/131 (53%), Gaps = 4/131 (3%) Query: 5 ARRRARECAVQALYSWQLSQNDIADV-EYQFLAEQDVKDVDVL-YFRELLAGVATNTAYL 62 +RR RE A QAL+S + +++ + + ++ ++ + L+ GV+ + Sbjct: 8 SRRDLRERAFQALFSLEFGGDNLTAARFAYTYDKNEEEEAELPLFLLTLIQGVSDCRREI 67 Query: 63 DGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 D + +L L L ++K++LR+ LYE+ + P +VA+NE IE+AK + E S Sbjct: 68 DKNISIHLKSGWTLSRLTLIDKSLLRLGLYEIKYHKETPERVALNEIIEIAKKYSDEKSS 127 Query: 121 KFVNGVLDKAA 131 KF+NGVL + Sbjct: 128 KFINGVLSQFV 138 >UniRef50_C3RII4 SUN protein n=10 Tax=Bacteria RepID=C3RII4_9MOLU Length = 417 Score = 122 bits (307), Expect = 4e-27, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 3/127 (2%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR A+ L +Q Q+ + +L + + D ++ G N YL+ + P Sbjct: 2 ARTTALDVLIKYQNEQSYLNITLNDYLEKSLLSRNDKDLATRIVYGTIQNKLYLEYQLAP 61 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 Y+ +++ EK +L ++LY+L VP I+EA+ LAK + KFVN +L Sbjct: 62 YIQG--KKIKNREKMILLMSLYQLIFLDKVPDYAVIDEAVRLAKKR-DNFAGKFVNAILR 118 Query: 129 KAAPVIR 135 + Sbjct: 119 NFLRNGK 125 >UniRef50_Q2J830 N utilization substance protein B homolog n=3 Tax=Frankia RepID=NUSB_FRASC Length = 135 Score = 122 bits (307), Expect = 4e-27, Method: Composition-based stats. Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 3/112 (2%) Query: 22 LSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQV 80 + + + ++ LA+ Y EL+ GV +D + Y LE + V Sbjct: 1 MRASAVPEILAARLAQS--DPPVSEYAVELVEGVVERRGEIDERIARYAEGWTLERMPPV 58 Query: 81 EKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAP 132 ++ +LRIA+ EL R DVP +VAI+EA+ELAK+ S FVNG+L Sbjct: 59 DRNILRIAVLELLWRPDVPDRVAIDEAVELAKNLSTHRSPAFVNGLLASLVE 110 >UniRef50_Q5HW85 N utilization substance protein B homolog n=24 Tax=Epsilonproteobacteria RepID=NUSB_CAMJR Length = 132 Score = 121 bits (306), Expect = 4e-27, Method: Composition-based stats. Identities = 42/133 (31%), Positives = 70/133 (52%), Gaps = 3/133 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 A R + R+ + LY+++L+ + + L E+ +++ + L G+ N +D Sbjct: 2 ATRHQVRQSVISLLYAFELNSQN-NVFVDEILDEKKIRNEQKNFTLNLYNGILDNLNNID 60 Query: 64 GLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + +L + LG VE+A+LR+ YEL +D P + INEAIELAK ++S KF Sbjct: 61 ETLNSFLNDNQITALGHVERAILRLGAYELLF-TDTPSAIVINEAIELAKELANDNSPKF 119 Query: 123 VNGVLDKAAPVIR 135 +NGVLD + Sbjct: 120 INGVLDALIKAKK 132 >UniRef50_D1PM68 Ribosomal RNA small subunit methyltransferase B n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM68_9FIRM Length = 437 Score = 121 bits (306), Expect = 5e-27, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 4/124 (3%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAE--QDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 R AV+AL + + V L + ++ D + + V LD L+ Sbjct: 4 RRLAVKALLHQEQAG-YANLVLDAELKKCTPPLEGRDAAFAARIFYTVLEYQPLLDFLLD 62 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 + + + L +A+LR L + +VP A+NE+++L K+ G + VN VL Sbjct: 63 RFSKKPVARLDAPVRAILRAGLAQARFM-EVPLPAAVNESVKLTKAMGKTSAAGMVNAVL 121 Query: 128 DKAA 131 +AA Sbjct: 122 RRAA 125 >UniRef50_C4G2S0 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G2S0_ABIDE Length = 455 Score = 121 bits (306), Expect = 5e-27, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 49/125 (39%), Gaps = 2/125 (1%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQ-DVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 RE + + V L + + L G YLD ++ Sbjct: 6 REIVLDM-FLSLKDGKPGHIVLKDTLDNYLYLDKASRGFITRLYEGSIEKMIYLDFVINS 64 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 + +++L + K ++ A+Y++ VP AINEA++LAK G FVNGVL Sbjct: 65 FSKTPVKKLKPIIKILMETAVYQIFFMDRVPDSAAINEAVKLAKKRGLAGLSGFVNGVLR 124 Query: 129 KAAPV 133 A Sbjct: 125 NIARN 129 >UniRef50_A4XL79 Sun protein n=2 Tax=Clostridia RepID=A4XL79_CALS8 Length = 433 Score = 121 bits (306), Expect = 6e-27, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 57/139 (41%), Gaps = 7/139 (5%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK RR A ++ + +N AD + + K D F EL+ GV Sbjct: 1 MKINTRR----AAFLVIFEIESRKNVNADALMEKYHHKLKKTEDRALFVELVHGVLRYKN 56 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD + + ++ + +LRIA YEL +P +NEA ELAK+ ++ Sbjct: 57 ILDYYINFVAKKGVK--DKKILNILRIATYELLFLDKIPDYATVNEACELAKNV-NKNQK 113 Query: 121 KFVNGVLDKAAPVIRPNKK 139 FVN +L +K Sbjct: 114 DFVNAILRNIIRRKDEIEK 132 >UniRef50_Q022D6 NusB/RsmB/TIM44 n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q022D6_SOLUE Length = 360 Score = 121 bits (305), Expect = 6e-27, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 51/125 (40%), Gaps = 4/125 (3%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR A L S +D+ D+ D E++ GV A LD L+ Sbjct: 6 ARIAAFDIL-QLVESGGYASDLL--LARTADLDSRDAGLASEIVFGVLRYRAQLDFLIIH 62 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 Y R +L + LR+A+Y++ VP A+ E++EL K + FVN +L Sbjct: 63 YAGRS-RKLDPEVRTALRMAIYQIRYLERVPPHAAVKESVELVKRARKTSAAGFVNAILR 121 Query: 129 KAAPV 133 + Sbjct: 122 QVDRD 126 >UniRef50_C7Q4P0 Fmu (Sun) domain protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q4P0_CATAD Length = 493 Score = 121 bits (305), Expect = 6e-27, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 54/123 (43%), Gaps = 1/123 (0%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 +AR A++ L + + + + L ++ + D + EL G D ++ Sbjct: 12 QARAAALEVLEAVRTRDAYANLLLPRLLRDRGLSGRDAAFTTELSYGTLRGLGTYDAIIA 71 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 + R L+ + V LRI ++L DVP A++ ++L +S E + +F N +L Sbjct: 72 ACVDRDLDAVDPVVLDALRIGAHQLLAM-DVPPHAAVSTTVDLVRSVSNEGASRFANAIL 130 Query: 128 DKA 130 + Sbjct: 131 RRV 133 >UniRef50_A5ZPE1 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=A5ZPE1_9FIRM Length = 180 Score = 121 bits (304), Expect = 8e-27, Method: Composition-based stats. Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 3/131 (2%) Query: 4 AARRRARECAVQALYSWQLSQND--IADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 R RE + L+ Q + + V F ++++ D + + + Sbjct: 1 MRRSEQREHIFKLLFMTQFNSENEMSDQVSMYFDTLGELEEKDQEAIQNKYQHILEHLDE 60 Query: 62 LDGLMKPYLSRLLE-ELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D ++ Y + +V+ LR+A+YE+ +VP VAINEA+ELAK FG EDS Sbjct: 61 IDQILNEYSRGWKTTRMNRVDLTALRLAVYEMKMDEEVPVGVAINEAVELAKLFGGEDSG 120 Query: 121 KFVNGVLDKAA 131 FVNG+L K A Sbjct: 121 SFVNGILGKIA 131 >UniRef50_B8FS79 Sun protein n=2 Tax=Desulfitobacterium hafniense RepID=B8FS79_DESHD Length = 453 Score = 121 bits (304), Expect = 9e-27, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 2/124 (1%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 +R AVQ L + + V + L + + L+ G + LD ++ Sbjct: 6 SRALAVQILRRIEEEKAYANLVMQKALHDLS-DPRERQLATLLVNGTLKHRLTLDYALRR 64 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 +L + L +L + +LRI+ ++ S +P VAINE +EL K VN VL Sbjct: 65 HLRKPLSQLPHEVRWILRISALQILYLSRIPAAVAINEGVELTKKQQG-KYTSLVNSVLR 123 Query: 129 KAAP 132 + Sbjct: 124 RVLE 127 >UniRef50_A3UCC3 Transcription antitermination protein NusB n=1 Tax=Oceanicaulis alexandrii HTCC2633 RepID=A3UCC3_9RHOB Length = 158 Score = 120 bits (303), Expect = 1e-26, Method: Composition-based stats. Identities = 41/132 (31%), Positives = 59/132 (44%), Gaps = 10/132 (7%) Query: 14 VQALYSWQLSQNDIADVEYQFLAEQ--------DVKDVDVLYFRELLAGVATNTAYLDGL 65 VQALY + S + V +F + D + D +F L+ G+ + A +D Sbjct: 25 VQALYQMETSGSGAKAVVKEFRDHRFGYEDEPGDYVETDEDFFENLVTGIVSIQADVDKR 84 Query: 66 MKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 + L L L +A+LR YEL R DVP V INE +++A +F FV Sbjct: 85 ISGVLKEGWKLSRLDATVRAILRAGGYELIARKDVPPAVVINEYVDVAHAFFEGTEPGFV 144 Query: 124 NGVLDKAAPVIR 135 N LD A +R Sbjct: 145 NATLDALAKQVR 156 >UniRef50_B6IMS4 Transcription antitermination protein NusB, putative n=1 Tax=Rhodospirillum centenum SW RepID=B6IMS4_RHOCS Length = 179 Score = 120 bits (303), Expect = 1e-26, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 10/135 (7%) Query: 14 VQALYSWQLSQNDIADVEYQFLAEQ--------DVKDVDVLYFRELLAGVATNTAYLDGL 65 VQALY +L +F+ + D F +++ GV A +D L Sbjct: 37 VQALYQIELGGTPSETAIGEFVRHRLGQEIDGDRYVSADPQLFADIVRGVMARQADVDQL 96 Query: 66 MKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 + L L+ + + +A+LR +EL + V + IN+ I++ +F A V Sbjct: 97 VTGVLDRQWGLDRMEPILRAILRAGAWELLGNTGVAPHIVINDYIDVGHAFFAGREPGMV 156 Query: 124 NGVLDKAAPVIRPNK 138 NGVLD+ A +RP + Sbjct: 157 NGVLDRIARQLRPEE 171 >UniRef50_C6QHP1 NusB antitermination factor n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QHP1_9RHIZ Length = 170 Score = 120 bits (303), Expect = 1e-26, Method: Composition-based stats. Identities = 42/135 (31%), Positives = 72/135 (53%), Gaps = 10/135 (7%) Query: 14 VQALYSWQLSQNDIADVEYQFL--------AEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 VQALY ++ D+ DV +FL ++ + D ++F ++L V +D + Sbjct: 23 VQALYQMDMAGTDLNDVIAEFLNERLSGDNRDEMLAGADRVFFADILRAVVRRQREIDPM 82 Query: 66 MKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 + L+ L + + +A+LR + EL R DVP +VAI+E + +A+ F E+ + V Sbjct: 83 IDEQLAVGWRLVRVDSILRAILRGGVAELVDRYDVPARVAISEYVNVARVFFDEEEPRVV 142 Query: 124 NGVLDKAAPVIRPNK 138 NGVLDK A +R ++ Sbjct: 143 NGVLDKLARRLRTSE 157 >UniRef50_Q0BTF1 N utilization substance protein B homolog n=11 Tax=Acetobacteraceae RepID=NUSB_GRABC Length = 163 Score = 120 bits (302), Expect = 1e-26, Method: Composition-based stats. Identities = 39/152 (25%), Positives = 65/152 (42%), Gaps = 15/152 (9%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQF-------------LAEQDVKDVDVLYF 48 + R +R AVQAL+ + +Q + V QF + + D +V F Sbjct: 4 RTRPRTASRVAAVQALFQGEQAQESLEAVIEQFVRFRLGALPGQDGFEDGRIPDAEVPLF 63 Query: 49 RELLAGVATNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINE 106 ++ +D L+ L L L V +A+LR EL + P +V INE Sbjct: 64 SRIVRAATKEQDVIDPLLITALPAEWPLARLDPVLRALLRAGACELRMKDGPPPRVVINE 123 Query: 107 AIELAKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 +++A F + + VNG+L+ A +RP + Sbjct: 124 YLDIAHGFFQGEEPRMVNGILNALARQLRPEE 155 >UniRef50_C4DPH0 tRNA/rRNA cytosine-C5-methylase n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DPH0_9ACTO Length = 532 Score = 120 bits (302), Expect = 1e-26, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 46/123 (37%), Gaps = 1/123 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R A + L + V + L + V D + EL G LD ++ Sbjct: 29 RRIAYEVLAAVSTQDAYANLVLPKLLRHRGVSGRDAAFATELSYGTLRRRGSLDAVIASA 88 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 R + L Q VLR+ +Y+L + V A N + LA+ FVN V+ K Sbjct: 89 SGRAVSALDQSVADVLRLGVYQLLY-TRVAAHAAANTTVSLARKVCGHRPAGFVNAVMRK 147 Query: 130 AAP 132 + Sbjct: 148 VSR 150 >UniRef50_C5C681 N utilization substance protein B homolog n=14 Tax=Actinomycetales RepID=NUSB_BEUC1 Length = 153 Score = 120 bits (302), Expect = 1e-26, Method: Composition-based stats. Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 12/137 (8%) Query: 14 VQALYSWQLS--------QNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 + LY D + + +A + Y E++ GVA + A +D L Sbjct: 12 LDLLYEADQKAVSGGAPASGDAVALLAERIATPHGEAPMREYTVEIVEGVAAHQARIDEL 71 Query: 66 MKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 ++ Y LE + V++A+LRI ++EL DVP VA++EA+ LA +DS FVN Sbjct: 72 LETYAQGWSLERMPAVDRAILRIGVWELLFNDDVPDAVAVDEAVALAAELSTDDSPTFVN 131 Query: 125 GVLD---KAAPVIRPNK 138 G+L + APV+R + Sbjct: 132 GLLGQLLRLAPVLRDEE 148 >UniRef50_A3TLN6 Putative RNA-binding Sun protein n=2 Tax=Actinobacteria (class) RepID=A3TLN6_9MICO Length = 500 Score = 120 bits (302), Expect = 2e-26, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 50/140 (35%), Gaps = 6/140 (4%) Query: 2 KPAARRR----ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVAT 57 KP+ R + AR A L + + + D + EL G Sbjct: 27 KPSERAKHAEPARLAAYTLLRAVD-DGAYANLEFPAIIRRHKLDSRDAAFATELAFGTLR 85 Query: 58 NTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 + D +++ R + VLR+ ++L VP A ++ + LA++ Sbjct: 86 MQGFYDAVIERAADRSTSTIDSGVLDVLRLGAHQLLGM-RVPTHAAADQTVGLARTVSGA 144 Query: 118 DSHKFVNGVLDKAAPVIRPN 137 + FVN V+ + + R Sbjct: 145 GASGFVNAVMRRISERTREE 164 >UniRef50_A5CWS4 N utilization substance protein B n=2 Tax=sulfur-oxidizing symbionts RepID=A5CWS4_VESOH Length = 141 Score = 120 bits (301), Expect = 2e-26, Method: Composition-based stats. Identities = 52/136 (38%), Positives = 82/136 (60%), Gaps = 1/136 (0%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 ++R RE +QALY + +S ++ +E QFL ++ + ++F +L + N L Sbjct: 4 KTPKQRTRERVIQALYQYLVSGGEVFQIEQQFLNQKQ-GKISKVFFSDLFINILENRFVL 62 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 D L+ +SR EELG VE ++L + +EL S+VPYKV INE++ LAK +GAE S+K Sbjct: 63 DELITSTISRGTEELGSVEHSILYLGTFELKFNSEVPYKVVINESLALAKLYGAEGSYKL 122 Query: 123 VNGVLDKAAPVIRPNK 138 +N LDK A ++R + Sbjct: 123 INVSLDKLARILRKIE 138 >UniRef50_O66530 N utilization substance protein B homolog n=3 Tax=Aquificaceae RepID=NUSB_AQUAE Length = 148 Score = 119 bits (300), Expect = 2e-26, Method: Composition-based stats. Identities = 36/130 (27%), Positives = 67/130 (51%), Gaps = 4/130 (3%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDV-LYFRELLAGVATNTAYLDG 64 R+ AR+ A LY W L + ++ + + E+++K+ D Y ++L+ + +D Sbjct: 4 RKGARDTAFLVLYRWDLRGENPGELFKEVVEEKNIKNKDAYEYAKKLVDTAVRHIEEIDS 63 Query: 65 LMKPYLSRL-LEELGQVEKAVLRIALYELSKRS-DVPYKVAINEAIELAKSFGAEDSHKF 122 +++ +L ++ LG VE+ LR+ + EL P +V I+ ++L K + E + KF Sbjct: 64 IIEKHLKGWSIDRLGYVERNALRLGVAELIFLKSKEPGRVFID-IVDLVKKYADEKAGKF 122 Query: 123 VNGVLDKAAP 132 VNGVL Sbjct: 123 VNGVLSAIYK 132 >UniRef50_P71675 Putative methyltransferase Rv1407/MT1451 n=56 Tax=Actinomycetales RepID=Y1407_MYCTU Length = 457 Score = 119 bits (300), Expect = 3e-26, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 49/129 (37%), Gaps = 2/129 (1%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR A + L + V LA++ + D + EL G LD ++ Sbjct: 16 ARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTYGTCRARGLLDAVIGA 75 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 R + + V +LR+ Y+L R+ V A++ +E A FVNGVL Sbjct: 76 AAERSPQAIDPVLLDLLRLGTYQLL-RTRVDAHAAVSTTVEQAGIEFDSARAGFVNGVLR 134 Query: 129 KAA-PVIRP 136 A R Sbjct: 135 TIAGRDERS 143 >UniRef50_B9XT31 Sun protein n=1 Tax=bacterium Ellin514 RepID=B9XT31_9BACT Length = 444 Score = 119 bits (300), Expect = 3e-26, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 51/130 (39%), Gaps = 2/130 (1%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R+ AV+ L + ++ L+ + D +EL+ G+ L+ L+ Sbjct: 16 RQIAVRVLTERLSQEEYTENLLEIELSRARLSAPDRGLCQELVYGIVRWQETLNWLIDRK 75 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 + +L++ LY++ +P A++E +E+AK G FVN VL Sbjct: 76 TEGR--RQKPEMQVLLQLGLYQMFWLDRIPNHAAVHETVEIAKELGFVAQSGFVNAVLRG 133 Query: 130 AAPVIRPNKK 139 +K Sbjct: 134 YLRERVETEK 143 >UniRef50_B9E100 N utilization substance protein B homolog n=14 Tax=Clostridium RepID=NUSB_CLOK1 Length = 156 Score = 119 bits (300), Expect = 3e-26, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 21/153 (13%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAE--------------------QDVKDV 43 R++ RE ++ L+ +++ + D+K++ Sbjct: 1 MNRKKTRELTMKLLFQMAINKEKADVIISNLKENIEMEQGSQKNSISQIYGENMGDLKNI 60 Query: 44 DVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKV 102 D+ Y +L G+ N L+ ++ YL L L +V+ A+L+I YE D+P KV Sbjct: 61 DIDYVVRVLRGIEKNEDMLNIEIEKYLRNWKLNRLSKVDSAILKICTYEFLHEDDIPEKV 120 Query: 103 AINEAIELAKSFGAEDSHKFVNGVLDKAAPVIR 135 +INEAIELAK + +E S F+NGVL + Sbjct: 121 SINEAIELAKKYSSEKSASFINGVLGNMIKDEK 153 >UniRef50_A9KMC2 N utilization substance protein B homolog n=17 Tax=Bacteria RepID=NUSB_CLOPH Length = 132 Score = 119 bits (299), Expect = 3e-26, Method: Composition-based stats. Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 3/131 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIAD--VEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 RR RE + L+ + + + V + F + + + Y + Sbjct: 1 MTRREIREHLFRMLFRKEFHEPTELEEQVLFYFDSLESITPEQQEYLNVRFDKINEKLGE 60 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D ++ S L +G+V+ ++R+A +E+ +VP KVAINEAIELAK +G + S Sbjct: 61 IDTILANASSGWKLNRMGKVDLNIMRLATFEIRFDDEVPVKVAINEAIELAKKYGGDSSA 120 Query: 121 KFVNGVLDKAA 131 FVNG+L K Sbjct: 121 SFVNGILAKVI 131 >UniRef50_C0VVW4 Transcription antitermination protein NusB n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VVW4_9CORY Length = 342 Score = 119 bits (299), Expect = 3e-26, Method: Composition-based stats. Identities = 43/140 (30%), Positives = 65/140 (46%), Gaps = 8/140 (5%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAE----QDVKDVDVLYFRELLAGVAT 57 K AR +AR A + L+ + D +V + V Y RE++ GVA Sbjct: 9 KHGARYKARRHAAEILFEAEARDIDPVEVTRTREELSHGPEPVTAPVRPYTREIIEGVAV 68 Query: 58 NTAYLDGLMKPYL---SRLLEELGQVEKAVLRIALYELSKR-SDVPYKVAINEAIELAKS 113 N +D ++ L + L V++AVLR+A +EL S+VP K A+ +A+EL Sbjct: 69 NLDLIDFAIERELADTDWTFDRLPGVDRAVLRVATWELLFNASNVPQKTAVTQAVELVSQ 128 Query: 114 FGAEDSHKFVNGVLDKAAPV 133 +DS +VN VLD Sbjct: 129 LSTDDSPAYVNAVLDAMWKN 148 >UniRef50_C1XPK4 NusB antitermination factor n=2 Tax=Meiothermus RepID=C1XPK4_9DEIN Length = 156 Score = 119 bits (299), Expect = 3e-26, Method: Composition-based stats. Identities = 38/148 (25%), Positives = 66/148 (44%), Gaps = 16/148 (10%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDV----KDVD----------VLYFREL 51 RR+ARE A + L+ + + + D + D + + R L Sbjct: 2 RRKARELAFKVLFEHAVGGVSLEEAWEHVSQNHDPEEASSERDSYDDPLDQGGLEFARRL 61 Query: 52 LAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIEL 110 L G + + +D ++ + ++ + + AVLR+A YE+ PY I A+++ Sbjct: 62 LEGYQRHESEIDEVLGNTIQGWSFGQMAKTDLAVLRLAAYEMLYEP-TPYAPLIEVAVKI 120 Query: 111 AKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 AK +G EDS +FVNGVL + I + Sbjct: 121 AKRYGGEDSGRFVNGVLGRLLKRIENAE 148 >UniRef50_Q6AS22 Related to SUN protein (FMU protein) n=1 Tax=Desulfotalea psychrophila RepID=Q6AS22_DESPS Length = 454 Score = 119 bits (299), Expect = 3e-26, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 55/137 (40%), Gaps = 5/137 (3%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK ++R A + L Q + + + ++ + + ++ GV Sbjct: 1 MKTSSRY----IAAETLCQVYKKQQPVKPILEKLCQQKQLNPRERSLAMNMVFGVLRKRQ 56 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG-AEDS 119 YLD L++ + L++L L + LY+L +P +NEA+ K+ + Sbjct: 57 YLDILLRKLSTVRLKKLDPFVHQALTVGLYQLFFLDSIPESAIVNEAVNSCKTAKVHKRL 116 Query: 120 HKFVNGVLDKAAPVIRP 136 H FVNG+L A Sbjct: 117 HGFVNGILRNATRQKEA 133 >UniRef50_C5SLV1 NusB antitermination factor n=2 Tax=Caulobacteraceae RepID=C5SLV1_9CAUL Length = 177 Score = 118 bits (298), Expect = 4e-26, Method: Composition-based stats. Identities = 45/146 (30%), Positives = 68/146 (46%), Gaps = 15/146 (10%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFL-------------AEQDVKDVDVLYFREL 51 AR AR VQALY +++ + V +F EQ + D +F + Sbjct: 32 ARTVARLVLVQALYQMEIAGTGVESVIREFADFRFDGNIEGECGEEQRLGTADEAFFADG 91 Query: 52 LAGVATNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIE 109 L + A +D L+ L + L+ + +A+LR +EL R DV +V INE +E Sbjct: 92 LRTIVKAQAEIDVLIAERLASNWRLDRIDTTLRAILRAGAWELKFRPDVAVEVVINEYVE 151 Query: 110 LAKSFGAEDSHKFVNGVLDKAAPVIR 135 +AK+F + +FVNG LD A R Sbjct: 152 IAKAFFGNEEARFVNGALDGIAKDAR 177 >UniRef50_B3ERI6 Putative uncharacterized protein n=1 Tax=Candidatus Amoebophilus asiaticus 5a2 RepID=B3ERI6_AMOA5 Length = 378 Score = 118 bits (297), Expect = 5e-26, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 63/123 (51%), Gaps = 1/123 (0%) Query: 13 AVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSR 72 V+ L LS++DI + + + ++ +L+A ++D L++ ++ Sbjct: 256 VVKKLLHELLSKSDIELLVKEIEDAMQIGTNAASFYDKLIATALEQEKFIDNLIQQHIKN 315 Query: 73 L-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAA 131 +E +++ ++++ L E+ +P KVAINE ++LAK + S KF+NGVLD A Sbjct: 316 WSIERTVLLDRIIIKMGLCEMKYFDSIPTKVAINEYVDLAKKYSTAKSSKFINGVLDTIA 375 Query: 132 PVI 134 I Sbjct: 376 KTI 378 >UniRef50_Q1Q7P9 Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q7P9_9BACT Length = 462 Score = 118 bits (297), Expect = 5e-26, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 54/128 (42%), Gaps = 1/128 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R +++ L ++ + + +V D EL+ G+ + LD ++ + Sbjct: 4 RLESIRILRKVDEKDVLAQELVEERCQQTNVSRRDKHLLLELVNGITRHRLSLDTILSFF 63 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF-GAEDSHKFVNGVLD 128 +++ LR+ +Y++ +P+ A+N ++EL K+ D+ +F N +L Sbjct: 64 SKIPPQKIEPWLLYALRLGIYQMIFLDKIPHSAAVNTSVELVKNLIRRPDAARFANAILR 123 Query: 129 KAAPVIRP 136 I+ Sbjct: 124 AVDRTIKN 131 >UniRef50_UPI00016C434C transcription antitermination protein NusB n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C434C Length = 139 Score = 118 bits (297), Expect = 5e-26, Method: Composition-based stats. Identities = 45/131 (34%), Positives = 68/131 (51%), Gaps = 5/131 (3%) Query: 13 AVQALYSWQLSQNDIA-DVEYQFLAEQDVKDVDVL-YFRELLAGVATNTAYLDGLMKPYL 70 +Q L+ W + + QF ++ + D ++ Y L GVA +D +K Sbjct: 2 VLQLLFQWDQNPTKVPRKAIQQFARDRLLGDAEMSTYALSLYDGVAGRKDAIDEALKSAA 61 Query: 71 SRL-LEELGQVEKAVLRIALYELSKRS-DVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 + L + V++ VLR+ +EL + P +V INEAIELAK FG+EDS FVNGVLD Sbjct: 62 TNWRLTRMTPVDRNVLRLGAFELLFDAAPQPLEVVINEAIELAKRFGSEDSPAFVNGVLD 121 Query: 129 KAAPVIRPNKK 139 + +R +K Sbjct: 122 RVGK-MRDERK 131 >UniRef50_C6MTY9 Sun protein n=1 Tax=Geobacter sp. M18 RepID=C6MTY9_9DELT Length = 449 Score = 118 bits (297), Expect = 6e-26, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 1/124 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R A L + ++ + L++ +K D EL+ GV LD ++ + Sbjct: 7 RRAAFDILLRIEKEKSFADILIDHELSKDMIKGADRGLLTELVYGVLRRQGTLDHIIGQF 66 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 + ++L +LR+ LY+ VP A+NE ++LAK A + F+N +L Sbjct: 67 SKQRTDKLELYVLLLLRLGLYQCFFLDRVPVSAAVNETVKLAKEL-APRASGFINAILRN 125 Query: 130 AAPV 133 A Sbjct: 126 ADRN 129 >UniRef50_C1TMF2 Transcription antitermination factor NusB n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TMF2_9BACT Length = 143 Score = 118 bits (296), Expect = 8e-26, Method: Composition-based stats. Identities = 45/144 (31%), Positives = 75/144 (52%), Gaps = 6/144 (4%) Query: 1 MKPA----ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVA 56 MK + RARE A+Q LYS +++ A+ + +D DV+ R L+ GV Sbjct: 1 MKVGRGHYKKHRAREVALQLLYSMDVTKKHDAEKALNDFSFEDEIDVETG-VRALVLGVM 59 Query: 57 TNTAYLDGLMKPYLSRLL-EELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG 115 + +D L+ + + + V++A +R+A+YE VP VAI+EA+EL K FG Sbjct: 60 DHLGEIDNLINVNVVGWRGDRMVAVDRAAIRLAVYEGLIARVVPVPVAISEAVELVKVFG 119 Query: 116 AEDSHKFVNGVLDKAAPVIRPNKK 139 ++S +FVNG L + + + + Sbjct: 120 TDESGRFVNGALARIVRAMPEDDE 143 >UniRef50_Q057F3 N utilization substance protein B homolog n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=NUSB_BUCCC Length = 142 Score = 118 bits (296), Expect = 8e-26, Method: Composition-based stats. Identities = 58/132 (43%), Positives = 87/132 (65%), Gaps = 2/132 (1%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIA-DVEYQFLAEQDVKDVDVLYFRELLAGVATNT 59 MK + RR+ARE A+Q LYSWQ+S+ + + E + + +D +YF +++ GV N Sbjct: 1 MK-SKRRKARELAIQVLYSWQISKKIVLFETEKYVIEQNKKYSLDKIYFHKIVTGVIKNI 59 Query: 60 AYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 Y+D ++K +S+ L +E+A+LR+A YE+ KR D+PYKV INE IELAK +G+ S Sbjct: 60 FYIDKIIKKNISKKKNRLDYIEQAILRLASYEIIKRLDIPYKVIINEGIELAKIYGSNKS 119 Query: 120 HKFVNGVLDKAA 131 HKF+N +LDK Sbjct: 120 HKFINSILDKII 131 >UniRef50_B1C650 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C650_9FIRM Length = 132 Score = 118 bits (296), Expect = 8e-26, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 5/135 (3%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK R AR+ + ++ + + Q + + +K Y ++ + G+ N Sbjct: 1 MK---RDVARDLVYKIIFQINFHDDFA-ERYEQMILDSGIKGTQGEYAKKTVKGILDNLE 56 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D +K L E L AVLR+ ++E+ D+P V +NEA+ LA ++ E Sbjct: 57 EIDDTIKDNLKGWKFERLSTHVIAVLRLGVFEIMYNEDIPPLVGLNEAVSLAHTYSDEKE 116 Query: 120 HKFVNGVLDKAAPVI 134 FVNG+L+ + Sbjct: 117 ATFVNGLLNSVYKKV 131 >UniRef50_C9LLB0 Transcription antitermination factor NusB n=1 Tax=Dialister invisus DSM 15470 RepID=C9LLB0_9FIRM Length = 133 Score = 118 bits (296), Expect = 8e-26, Method: Composition-based stats. Identities = 39/130 (30%), Positives = 68/130 (52%), Gaps = 6/130 (4%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +R +ARE A++ LY+ +++ E + + + L+ V + +D Sbjct: 1 MSRSKAREHALKVLYAKEIN---PNTAELSADISDALSEKGKSFSDFLVEQVQLHRDEID 57 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYEL--SKRSDVPYKVAINEAIELAKSFGAEDSH 120 G + +L + L +L V+K +LRIA+ E + KV INEA+ELAK +G E+S+ Sbjct: 58 GEIVRFLKKWSLSQLNIVDKNILRIAIAEFNYTYEDKADRKVIINEAVELAKVYGGENSY 117 Query: 121 KFVNGVLDKA 130 +F+NG+L Sbjct: 118 RFINGILSAV 127 >UniRef50_Q03FY2 tRNA and rRNA cytosine-C5-methylase n=2 Tax=Pediococcus RepID=Q03FY2_PEDPA Length = 444 Score = 117 bits (295), Expect = 8e-26, Method: Composition-based stats. Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 2/128 (1%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR AV L + Q + + D+D E++ GV + LD + Sbjct: 8 ARNLAVDILEKIDE-GSFSNIQLNQDIKSSSLIDIDKNLLTEIVYGVLQHRLTLDFYLAD 66 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 Y+ + E + +LR A++++ VP NE+IE+AK G + K V GVL Sbjct: 67 YIRKP-EMTPRWVINLLRTAVFQMEFLDRVPDFAIFNESIEIAKLRGNDGIRKMVTGVLR 125 Query: 129 KAAPVIRP 136 +P Sbjct: 126 SYQRNGKP 133 >UniRef50_Q18B61 N utilization substance protein B homolog n=6 Tax=Clostridiales RepID=NUSB_CLOD6 Length = 169 Score = 117 bits (295), Expect = 9e-26, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 74/167 (44%), Gaps = 34/167 (20%) Query: 1 MKP--AARRRARECAVQALYSWQLSQNDIADVEYQF------------------------ 34 MK A + RE ++ +Y +++ D +E + Sbjct: 2 MKKDRAQKSTTREYIMKLIYQININKEDFETLEDKVDNFLKDNSEHIINRYKELALQYSK 61 Query: 35 -----LAEQDVKDV-DVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRI 87 L + +++DV D Y + + N +D L+ + ++ + +V+ ++LR+ Sbjct: 62 NTNLKLEDTEIEDVIDKKYINTVCKALKENHDKIDELINKHAKNWTVDRMPKVDVSILRL 121 Query: 88 ALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVI 134 ++ E+ D P KV+INEA+ELAK + + S KF+NG+L I Sbjct: 122 SVCEILYL-DTPNKVSINEAVELAKIYCDDKSPKFINGILGSVVDEI 167 >UniRef50_C1F543 Putative ribosomal RNA small subunit methyltransferase B n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F543_ACIC5 Length = 440 Score = 117 bits (294), Expect = 1e-25, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 1/122 (0%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR A L S ++ + + D L+ G LD ++ Sbjct: 5 ARRVAFDLLQRMATSDAHSDELLR-TMKVNALAAQDRNLVTTLVLGTLRWQPALDQILLQ 63 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 +L+R + L + +A LR+ ++L VP +N+++EL K + VN VL Sbjct: 64 FLTRPDQRLSEPVRAALRLGAFQLLHLDRVPPHAVLNDSVELVKLSNEAYATGLVNAVLR 123 Query: 129 KA 130 K Sbjct: 124 KV 125 >UniRef50_Q01T72 N utilization substance protein B homolog n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=NUSB_SOLUE Length = 146 Score = 117 bits (294), Expect = 1e-25, Method: Composition-based stats. Identities = 36/127 (28%), Positives = 64/127 (50%), Gaps = 6/127 (4%) Query: 14 VQALYSWQLSQNDIADVEY---QFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL 70 +Q L+ W + + D L + + D + +L+ G + A +D + + Sbjct: 12 LQILFIWDARKQPVEDAINAYYDTLYSDEKPERD-PFVIDLVRGTVEHLAEVDDRITRHA 70 Query: 71 SRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 +E + V++ +LR+A+YE++ R P V I+EA+ELA+ F E+S +FVNGVLD Sbjct: 71 EHWRMERMPAVDRNILRLAVYEMT-RGGTPAPVTIDEALELARKFSNEESVQFVNGVLDA 129 Query: 130 AAPVIRP 136 + Sbjct: 130 VRREMPE 136 >UniRef50_A8TL32 NusB antitermination factor n=1 Tax=alpha proteobacterium BAL199 RepID=A8TL32_9PROT Length = 139 Score = 117 bits (294), Expect = 1e-25, Method: Composition-based stats. Identities = 42/129 (32%), Positives = 63/129 (48%), Gaps = 10/129 (7%) Query: 20 WQLSQNDIADVEYQF--------LAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL- 70 ++S +V +F + D+ D +F L+ GVA LDG++ L Sbjct: 1 MEVSGKSGHEVVPEFVGRRFAGLIEGGDMAPADPKFFERLVLGVAGEMPTLDGMLADCLQ 60 Query: 71 -SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 LE L V +A+ R+ YEL DVP +V I+E ++L +F A VNGVLDK Sbjct: 61 PEGHLERLEVVLRAIFRLGTYELLSVDDVPVRVVISEYVDLTHAFFAGREPGLVNGVLDK 120 Query: 130 AAPVIRPNK 138 A V+R ++ Sbjct: 121 IARVVREDE 129 >UniRef50_D1U6T4 NusB/RsmB/TIM44 n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U6T4_9DELT Length = 425 Score = 117 bits (294), Expect = 1e-25, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 1/124 (0%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR A++AL S +DI L+ + D E+ G + ++ ++ Sbjct: 12 ARRIALEALSHCLFSGHDIQATLDTALSAKPTDPRDTGLATEIAYGYLRHKGRVEYVLSR 71 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 +L +L + + +A YE+ VP +++ A+E +K+ N VL Sbjct: 72 FLQDP-GKLPPKMRLAMGVAAYEMIFLDKVPAYASVDWAVEFSKTKPGTRLSGLFNAVLR 130 Query: 129 KAAP 132 + A Sbjct: 131 RVAE 134 >UniRef50_A4U1B3 Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p:Antitermination protein NusB n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4U1B3_9PROT Length = 437 Score = 117 bits (294), Expect = 1e-25, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 46/127 (36%), Gaps = 1/127 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R + L + + + + + D + R L+A +D ++ Sbjct: 15 RSIVLDLLECVLAQKRLLDETLDSEPRLTKLAERDRAFTRMLVATTLRRLGQIDAVIARC 74 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 + R L + +LR+ +L D P AI+ ++LAK+ K +N VL + Sbjct: 75 IDRPLPAKAGRVRNMLRLGAAQLLFL-DTPPHAAISTTVDLAKNSPLAGFAKLINAVLRR 133 Query: 130 AAPVIRP 136 R Sbjct: 134 LDREGRA 140 >UniRef50_C4XT41 rRNA (Cytosine-C(5)-)-methyltransferase n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XT41_DESMR Length = 477 Score = 117 bits (294), Expect = 1e-25, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 48/129 (37%), Gaps = 5/129 (3%) Query: 9 ARECAVQALYSWQLS----QNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 AR A+ L S D+ LA+ + D EL+ G LD Sbjct: 45 ARRIALTVLGRVLPSPKSPGQDVQAALDVALADSTLDPRDRGLATELVYGYLRLCGRLDY 104 Query: 65 LMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 ++ +L + + +L +A YE+ + VP +++ A+ + G + N Sbjct: 105 ILAQFLKNPTA-VPLAVRRILGLAAYEILHCAKVPAYASVDWAVSAVRKAGGKGLSGMAN 163 Query: 125 GVLDKAAPV 133 VL + A Sbjct: 164 AVLRRVAAD 172 >UniRef50_C5NYK7 Transcription antitermination factor NusB n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NYK7_9BACL Length = 131 Score = 116 bits (293), Expect = 1e-25, Method: Composition-based stats. Identities = 40/135 (29%), Positives = 73/135 (54%), Gaps = 9/135 (6%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK +R RE + L+ + ++ D ++ L ++++ Y + L + Sbjct: 1 MK--SRHELREAVFKILFQVENTELDFIELLD--LEQEEISTSI--YVNKTLTEILEKKE 54 Query: 61 YLDGLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA-ED 118 +D ++ L LE L ++++ +LRI+ YE+ SD+PYKV+INEA+EL+K + ++ Sbjct: 55 EIDEIISNNLKDWKLERLSKMDRQILRISAYEILY-SDIPYKVSINEAVELSKKYSEKDE 113 Query: 119 SHKFVNGVLDKAAPV 133 S+KF+NGVL Sbjct: 114 SYKFINGVLKGIVEN 128 >UniRef50_UPI0001BC2C1E Fmu (Sun) domain protein n=1 Tax=Brevibacterium linens BL2 RepID=UPI0001BC2C1E Length = 492 Score = 116 bits (293), Expect = 1e-25, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 58/148 (39%), Gaps = 14/148 (9%) Query: 2 KPAARRRA------------RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFR 49 K A RR+ R A + L + + + LA ++ D + Sbjct: 30 KSAPRRQQTEREPRQAKNLPRRIAWEVLVDVETKDSYANLLLPAKLARTHMEPQDAAFTT 89 Query: 50 ELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIE 109 EL G + D ++ +R ++ + A +R+ +++ VP A++E + Sbjct: 90 ELTYGALRQQEFYDAIIARAANRPIDSIDAEPLAGMRLGAHQILSM-RVPDHAALSETVA 148 Query: 110 LAKSFGAEDSHKFVNGVLDKAAPVIRPN 137 + K+ A + FVN VL + + V R Sbjct: 149 VIKT-NAPKTAGFVNAVLRRISEVDRAE 175 >UniRef50_C0EFY5 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EFY5_9CLOT Length = 132 Score = 116 bits (293), Expect = 2e-25, Method: Composition-based stats. Identities = 39/137 (28%), Positives = 66/137 (48%), Gaps = 6/137 (4%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK R + RE A ++ + +D+++V + + L GV + + Sbjct: 1 MK---RHQMRENAFILVFEKIFNDDDVSEVIAAAEECGEFEVNSD--VIALFTGVQQHIS 55 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 LD L+ +L++ + L +V A+LR+A+YE+ V +AINEA+ELAK + ++ Sbjct: 56 ELDRLISEHLTKWNITRLSKVILAILRLAVYEIVYVERVEAPIAINEAVELAKEYATQED 115 Query: 120 HKFVNGVLDKAAPVIRP 136 FVNGVL Sbjct: 116 AAFVNGVLGSFVRAAEK 132 >UniRef50_B8D2G0 N utilization substance protein B homolog n=1 Tax=Halothermothrix orenii H 168 RepID=NUSB_HALOH Length = 134 Score = 116 bits (293), Expect = 2e-25, Method: Composition-based stats. Identities = 47/137 (34%), Positives = 73/137 (53%), Gaps = 7/137 (5%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVK---DVDVLYFRELLAGVAT 57 MK R + R A+Q LYS +S + E K D YF +++ GV Sbjct: 1 MKI-TRHQERVWALQILYSLDISSELNIQKARKTCREFKYKKVLDKKRYYFEDIVEGVIN 59 Query: 58 NTAYLDGLMKPY-LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 + LD ++ Y + +E + +++ +LRIALYE+ S +P VAI+EA+E+AK FG Sbjct: 60 SRQDLDSIINKYAIDWDVERMACIDRNILRIALYEI--ESGLPVGVAIDEAVEIAKDFGD 117 Query: 117 EDSHKFVNGVLDKAAPV 133 +S KF+NG+L K+ Sbjct: 118 SNSPKFINGILAKSIED 134 >UniRef50_C5RKK7 NusB antitermination factor n=1 Tax=Clostridium cellulovorans 743B RepID=C5RKK7_CLOCL Length = 134 Score = 116 bits (293), Expect = 2e-25, Method: Composition-based stats. Identities = 42/133 (31%), Positives = 73/133 (54%), Gaps = 6/133 (4%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLA-----EQDVKDVDVLYFRELLAGVATN 58 RR+ RE A++ YS + Q D V F ++D+KDVD + +L+G++ N Sbjct: 1 MNRRKTREIAIKLTYSLMIQQIDYKTVIENFKEVEDKEDEDLKDVDFTFVETILSGISEN 60 Query: 59 TAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 + + L+ L L + ++ A+L +A+YE+ D+P V+INEA+E+AK + + Sbjct: 61 KSNYEELVSQNLIGWKLNRISKLNLAILLVAIYEIKNIDDIPKAVSINEAVEIAKKYSDD 120 Query: 118 DSHKFVNGVLDKA 130 + F+N +LDK Sbjct: 121 KAPNFINSILDKI 133 >UniRef50_C0W3L2 rRNA (Cytosine-C(5)-)-methyltransferase n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W3L2_9ACTO Length = 527 Score = 116 bits (293), Expect = 2e-25, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 50/132 (37%), Gaps = 1/132 (0%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 +P+ AR +++AL + V L + D + L G Sbjct: 58 RPSTVDAARLVSLEALTKVRQDGGFANLVLPPMLDAARLDRRDAGFATALTYGTLRLQGR 117 Query: 62 LDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D ++ + R L++L V VLR+ ++L V A++ ++LA + Sbjct: 118 YDAIIAQCVDRRLDQLDGVVLDVLRLGTHQLLGM-RVATHAAVSATVDLASHAAGRGAAG 176 Query: 122 FVNGVLDKAAPV 133 VN VL + + Sbjct: 177 LVNAVLRRISQK 188 >UniRef50_A8I0J8 Antitermination protein n=1 Tax=Azorhizobium caulinodans ORS 571 RepID=A8I0J8_AZOC5 Length = 137 Score = 116 bits (292), Expect = 2e-25, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 59/135 (43%), Gaps = 10/135 (7%) Query: 14 VQALYSWQLSQNDIADVEYQF--------LAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 +QALY ++ + ++ +F + + D FR ++ GV +D + Sbjct: 1 MQALYQMDIAGTPVNEILAEFETHWLGREVEGDVYPEADRALFRTVVEGVLAQQRTIDPM 60 Query: 66 MKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 + L+ L + V +A LR +EL + + P +V I E + +A +F + V Sbjct: 61 VDEALTAGWPLRRVELVMRATLRAGAFELIGKPETPARVVIAEYVNVAAAFFEREETGMV 120 Query: 124 NGVLDKAAPVIRPNK 138 N VLD A +R + Sbjct: 121 NAVLDSLARKLRAEE 135 >UniRef50_C3XHP1 Predicted protein n=1 Tax=Helicobacter bilis ATCC 43879 RepID=C3XHP1_9HELI Length = 368 Score = 116 bits (292), Expect = 2e-25, Method: Composition-based stats. Identities = 42/130 (32%), Positives = 71/130 (54%), Gaps = 2/130 (1%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 A R++ARE +Q LY+ +L + + FL Q +++ + LL G+ + Sbjct: 2 ATRKQAREAIIQILYAKELGNDKAIEQAEAFLNAQKIRNKQQDFALNLLHGICNEERKIA 61 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ +L L LG +EK ++++ +YEL +++ V INEAIEL KSF +D+ + Sbjct: 62 DIINVFLKSWDLSRLGVIEKNIIKLGVYELL-QTNTQKAVIINEAIELTKSFNVQDAFRL 120 Query: 123 VNGVLDKAAP 132 VNG+LD A Sbjct: 121 VNGILDSVAK 130 >UniRef50_B0MDS2 Putative uncharacterized protein n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0MDS2_9FIRM Length = 131 Score = 116 bits (292), Expect = 2e-25, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 63/130 (48%), Gaps = 3/130 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQD--VKDVDVLYFRELLAGVATNTAY 61 R + RE + +S ++ + + + ++ + Y + + + Sbjct: 1 MTRSKLREQMFRLCFSIDFHTSEEFEAQADLYFSNNDFFRNKEKDYIKTRTLDMLSRLEE 60 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D + ++ LG+ E +LRIA+YE+ D+P KVAINEA+EL+K++ E + Sbjct: 61 IDQKINENSKGWDIKRLGKAELTILRIAVYEIMFDEDIPDKVAINEAVELSKTYCNEKAA 120 Query: 121 KFVNGVLDKA 130 F+NG+L K Sbjct: 121 SFINGILGKI 130 >UniRef50_A5WHT3 NusB antitermination factor n=1 Tax=Psychrobacter sp. PRwf-1 RepID=A5WHT3_PSYWF Length = 252 Score = 116 bits (292), Expect = 2e-25, Method: Composition-based stats. Identities = 48/149 (32%), Positives = 76/149 (51%), Gaps = 13/149 (8%) Query: 3 PAARRRARECAVQALYSWQLSQ-------------NDIADVEYQFLAEQDVKDVDVLYFR 49 AA R+AR A+Q LY W ++ N D+ + A + V + Y+ Sbjct: 34 HAAVRKARRFALQGLYEWLMTDHRFEQMGQGEWKANPPHDIAARTRATNAMHTVHLGYYH 93 Query: 50 ELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIE 109 L+ + L+ L+ +L R ++++ VE AVL I YEL +PYKV ++EA++ Sbjct: 94 TLMREIPEQITDLEALIAQHLDRAIDKIDMVEHAVLLIGAYELKNSLHIPYKVVLDEAMK 153 Query: 110 LAKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 L FGA D+HK +N V+DK A +R + Sbjct: 154 LNTHFGATDAHKLINAVMDKLAAQLRTVE 182 >UniRef50_Q2RTC4 N utilization substance protein B homolog n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=NUSB_RHORT Length = 185 Score = 116 bits (292), Expect = 2e-25, Method: Composition-based stats. Identities = 43/157 (27%), Positives = 62/157 (39%), Gaps = 26/157 (16%) Query: 7 RRARECAVQALYSWQLSQ------------------------NDIADVEYQFLAEQDVKD 42 AR AVQALY L++ D + ++ Sbjct: 23 SAARLAAVQALYVLDLAEDARVDQVVLDFMSGSMGGMAIVEVADPEGIFDPTEEIAALEP 82 Query: 43 VDVLYFRELLAGVATNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPY 100 D F L+ G A LD ++ L + L V +AVLR +YEL +R P Sbjct: 83 PDGELFAMLVRGAHAELARLDEVIGASLSADWPWDRLEPVVRAVLRAGVYELLERQRTPP 142 Query: 101 KVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPN 137 +VAI E +++A +F + VN VLD+ A RP Sbjct: 143 RVAIKEYVDIAAAFYSGAEPGMVNAVLDRVARSARPE 179 >UniRef50_Q317Q8 Sun protein n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q317Q8_DESDG Length = 444 Score = 116 bits (291), Expect = 2e-25, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 51/140 (36%), Gaps = 9/140 (6%) Query: 1 MKPAARRR--------ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELL 52 MK + RR AR A++ L + + V +L + + D EL+ Sbjct: 1 MKKQSPRRGGVATLPPARGAALEILRDVLDKKREAQSVLDSYLKDNRLSPQDAALCTELV 60 Query: 53 AGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAK 112 G + + L++ +L L + I++YE+ VP +++ A+ + Sbjct: 61 YGYLRSEIRISWLIRRFLK-PDSRLPAELLLTMGISVYEILYLQRVPVYASVDWAVSYVR 119 Query: 113 SFGAEDSHKFVNGVLDKAAP 132 S + N VL Sbjct: 120 SRFGTGLSRLANAVLRSIDR 139 >UniRef50_A6BZY6 Sun protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6BZY6_9PLAN Length = 477 Score = 116 bits (291), Expect = 3e-25, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 55/126 (43%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLM 66 R AR+ A L ++ + I+D Q+ D+ D E+ GV LD ++ Sbjct: 31 RSARQLAFFLLEEYRRTDQFISDSMQQWERRIDLSSADWRLAMEISIGVVRRQLTLDTII 90 Query: 67 KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGV 126 + L+R E++ +L+I Y+L +P A++E +ELA K VN + Sbjct: 91 ESQLTRPREKVEAPLWTLLQIGAYQLVMLDQIPDHAAVSETVELAGKLQRVRWKKMVNAI 150 Query: 127 LDKAAP 132 L + Sbjct: 151 LRSISR 156 >UniRef50_Q1NQ57 Fmu, rRNA SAM-dependent methyltransferase n=2 Tax=delta proteobacterium MLMS-1 RepID=Q1NQ57_9DELT Length = 487 Score = 116 bits (291), Expect = 3e-25, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 58/141 (41%), Gaps = 4/141 (2%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDV-KDVDVLYFRELLAGVATNT 59 M P A R+ A+Q L + + S + + L E + D L+ GV Sbjct: 1 MTPTA--NIRQVALQLLLAQEQSGQPVEQLLEHQLREHPLADGRDRRLLEALVYGVLRWR 58 Query: 60 AYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED- 118 LD ++ Y L ++ + A LR+ + +L +P AINE I+ ++ Sbjct: 59 GLLDQVVAGYARHPLAKMKPLTLAALRLGILQLLILERLPASAAINETIKALRAARQPRW 118 Query: 119 SHKFVNGVLDKAAPVIRPNKK 139 FVN VL KAA I + Sbjct: 119 LTGFVNAVLRKAAADIERLGR 139 >UniRef50_B1N082 Transcription termination factor n=3 Tax=Leuconostoc RepID=B1N082_LEUCK Length = 140 Score = 115 bits (290), Expect = 4e-25, Method: Composition-based stats. Identities = 49/140 (35%), Positives = 75/140 (53%), Gaps = 9/140 (6%) Query: 1 MKPAARRRARECAVQALYSWQL--SQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATN 58 M R +R+ A Q L++ + N+I + L +D D Y L+ G+ N Sbjct: 1 MANLTRHESRQAAFQILFALEKDPQNNNIDRLYDIVLEGKDFDD----YLPRLVNGILGN 56 Query: 59 TAYLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 LD + +L+ + + + + +LR+A+YELS++ VPYKVAI+EA+ LAK+F Sbjct: 57 KIDLDAQISEHLAAGWAIARINKADLVILRLAIYELSQQL-VPYKVAIDEALILAKTFAD 115 Query: 117 EDSHKFVNGVLDKAAPVIRP 136 ED KFVNGVL AP + Sbjct: 116 EDDRKFVNGVLKNFAPKVEA 135 >UniRef50_UPI0001C3796F transcription termination factor n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C3796F Length = 138 Score = 115 bits (289), Expect = 4e-25, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 66/136 (48%), Gaps = 3/136 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +RR R+ A + ++ L +DI ++ ++ D ++++ G + LD Sbjct: 1 MSRREIRDSAFKLVFEQLLRDDDITELYDIAEEIDEIIVNDE--VKKIVEGTLAHAEELD 58 Query: 64 GLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ Y R L + ++ A+LRIA+YE + P AI+EAI LA ++ + KF Sbjct: 59 SIIAGYSKSRSLSRISKLNIAILRIAIYESLYDDNTPMNAAISEAINLANTYSYNEDSKF 118 Query: 123 VNGVLDKAAPVIRPNK 138 +NGVL + + + Sbjct: 119 INGVLGAFSRDQKQKE 134 >UniRef50_C2BWJ7 Possible transcription antitermination protein NusB n=1 Tax=Mobiluncus curtisii ATCC 43063 RepID=C2BWJ7_9ACTO Length = 191 Score = 115 bits (289), Expect = 5e-25, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 5/134 (3%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIAD---VEYQFLAEQDVKD-VDVLYFRELLAGVAT 57 K R R R AV LY + D + Q ++ Y E+L GVA Sbjct: 4 KLPRRTRERVRAVDVLYEAHVRGWDTPEGIFSLSQLRQDETTAQTPLPAYAVEILEGVAE 63 Query: 58 NTAYLDGLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 + +D + Y L + +V+ A++R+A +E+ DV VAI A+++A+ Sbjct: 64 HLERIDAALATYSKAWPLHRMPEVDLAIMRVAAWEILFNPDVTGPVAITAAMQIAEERST 123 Query: 117 EDSHKFVNGVLDKA 130 ++S KF+NG+L Sbjct: 124 DESPKFINGLLGAI 137 >UniRef50_C5RAE2 RNA methyltransferase n=3 Tax=Lactobacillales RepID=C5RAE2_WEIPA Length = 456 Score = 115 bits (288), Expect = 5e-25, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 58/128 (45%), Gaps = 2/128 (1%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R +V+ L Q + + + D+ + +V ++ GV + L+ + P+ Sbjct: 18 RALSVRVLEKVQ-NGAYSNLQLDSMIKQADLSEKNVHLMTTMVYGVIQHRLTLEYWLIPF 76 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 + + ++L + +L I+++++ +P +EAI +AK G + + KFV GVL Sbjct: 77 IKQP-QKLESWVRELLYISIFQMQYLDKIPDHAIFDEAINIAKRRGHDGTRKFVTGVLHA 135 Query: 130 AAPVIRPN 137 P+ Sbjct: 136 IQRQGLPD 143 >UniRef50_UPI0000D5356A transcription termination factor (NusB) n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D5356A Length = 127 Score = 115 bits (288), Expect = 6e-25, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 14 VQALYSWQLSQNDI--ADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLS 71 +Q LY ++ ++F + K + EL+ G+A +D ++ L Sbjct: 1 MQFLYGNEIQGETEITDGKLHEFWELRLTKTFARDFAAELVKGIARELPLIDEAIEDSLE 60 Query: 72 R-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 L V++ +LR+A YE+ +P + AINEAIE+AK G+EDS F+NG+LD+ Sbjct: 61 NYSFGRLANVDRNILRLATYEILFADHIPGQAAINEAIEVAKRLGSEDSPSFINGILDRI 120 Query: 131 AP 132 Sbjct: 121 LQ 122 >UniRef50_A8SZ12 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A8SZ12_9FIRM Length = 153 Score = 115 bits (288), Expect = 6e-25, Method: Composition-based stats. Identities = 34/149 (22%), Positives = 63/149 (42%), Gaps = 15/149 (10%) Query: 4 AARRRARECAVQALYSWQLS-QNDIADVEYQFLAEQ-------------DVKDVDVLYFR 49 RR R+ + +++ + + Q ++ + + V + D Y Sbjct: 1 MTRREIRDKIFKIVFTAEFNTQEEMKEQLELAFDTEMPGDEEDDPMLYASVSEKDKEYIT 60 Query: 50 ELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAI 108 + + + + +D + L +G+ E A+LR+ +YE+ +P KVAINEA+ Sbjct: 61 DKVMDILAHKDAIDNTISEISEGWKLPRIGKEELAILRLGVYEVVYDETIPEKVAINEAV 120 Query: 109 ELAKSFGAEDSHKFVNGVLDKAAPVIRPN 137 ELAK + + KFVN +L K Sbjct: 121 ELAKKYCDVSASKFVNALLAKLVKKEESG 149 >UniRef50_A7NB00 Transcription antitermination factor n=19 Tax=Francisella RepID=A7NB00_FRATF Length = 141 Score = 115 bits (288), Expect = 6e-25, Method: Composition-based stats. Identities = 50/141 (35%), Positives = 77/141 (54%), Gaps = 3/141 (2%) Query: 1 MKPAARRR--ARECAVQALYSWQLSQNDIADVEYQFLAEQ-DVKDVDVLYFRELLAGVAT 57 MK AR R AR AVQALY +++ N ++++ Q+ A+ D D F L+ V T Sbjct: 1 MKTTARARNNARLYAVQALYQKKIADNTFSELKIQYYADNADRHYTDWDLFYRLIDAVKT 60 Query: 58 NTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 N +D +K S +E + V+ VL++A+ EL + + PY+V I E +E+ S G E Sbjct: 61 NQDTIDKYIKENSSNGVESINYVDYVVLQVAIAELIECLENPYQVIIKEYVEICYSMGTE 120 Query: 118 DSHKFVNGVLDKAAPVIRPNK 138 + +KF+N VL A IR + Sbjct: 121 EGYKFINAVLQNLAKSIRSEE 141 >UniRef50_Q3AC21 Sun protein n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AC21_CARHZ Length = 440 Score = 114 bits (287), Expect = 7e-25, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 49/130 (37%), Gaps = 3/130 (2%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 RE ++ L + + + + + + +A K D + EL GV LD + Sbjct: 4 RELVIKTLVEVEKNNSYVNLLLPKLIANLA-KKEDKDFVVELTYGVLKQLKLLDYMAGKL 62 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 L + +L +R+ LY+L VP AINE +E K VNGVL Sbjct: 63 LKKR-SKLPPFVINAIRVGLYQLYFLDKVPTYAAINETVEAVKR-NYRGFTGVVNGVLRN 120 Query: 130 AAPVIRPNKK 139 K Sbjct: 121 FIRRREEITK 130 >UniRef50_Q03W17 tRNA and rRNA cytosine-C5-methylase n=11 Tax=Lactobacillales RepID=Q03W17_LEUMM Length = 448 Score = 114 bits (287), Expect = 7e-25, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 53/124 (42%), Gaps = 3/124 (2%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R AVQ L + + Q + + + + D L+ GV + + ++P+ Sbjct: 12 RVLAVQTL-AKIKNGAYSNLQLNQVIKQHKLGEADTRLLTTLVYGVIQHRLTFEYWLEPF 70 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 + +++ + +L A++++ +P NE+IE+AK G + KFV +L Sbjct: 71 VGS--KKIDPWVRELLYTAIFQMEYLDKIPQHAIFNESIEVAKILGHVGTGKFVTAILHN 128 Query: 130 AAPV 133 + Sbjct: 129 ISRK 132 >UniRef50_C8R080 Sun protein n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R080_9DELT Length = 501 Score = 114 bits (287), Expect = 8e-25, Method: Composition-based stats. Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 2/126 (1%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQ-DVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 R+ A++ L + + V ++ A + D R L+ V +LD ++ Sbjct: 19 RQVALEILLQQEQQNRPLDQVLAEYPARRWPSDRRDRQLVRALVYEVLRRRGFLDHVVAR 78 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED-SHKFVNGVL 127 Y L ++ + A LR+ L +L +P AI+E I K+ FVNG+L Sbjct: 79 YAKHPLAKMKPLTLAALRLGLAQLLYFDRLPPAAAIDETIRALKAARQPRWITGFVNGLL 138 Query: 128 DKAAPV 133 AA Sbjct: 139 RNAARE 144 >UniRef50_C8PI00 Transcription antitermination factor NusB n=1 Tax=Campylobacter gracilis RM3268 RepID=C8PI00_9PROT Length = 342 Score = 114 bits (287), Expect = 8e-25, Method: Composition-based stats. Identities = 44/128 (34%), Positives = 67/128 (52%), Gaps = 5/128 (3%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 A R +AR A+ LYS ++ D ++L E+ +++ + LL G + N A +D Sbjct: 2 ATRHQARLAAISLLYSRDMNGGG-EDFADEYLEEKRIRNEQRNWTLALLRGASENLAAVD 60 Query: 64 GLMKPYLSR-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 L+ L L E+ +E+A+LR+ YEL +D + INEAI AK G S +F Sbjct: 61 ALIDENLKEFKLAEISALERAILRLGAYELRF-TDTDAGIVINEAINSAKELGI--SPRF 117 Query: 123 VNGVLDKA 130 +NGVLD Sbjct: 118 INGVLDAL 125 >UniRef50_Q1J0I4 N utilization substance protein B homolog n=3 Tax=Deinococcus RepID=NUSB_DEIGD Length = 169 Score = 114 bits (287), Expect = 9e-25, Method: Composition-based stats. Identities = 36/145 (24%), Positives = 68/145 (46%), Gaps = 10/145 (6%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAE--------QDVKDVDVLYFRELLAGV 55 RR ARE A + L+ + + + V + + + + + R+L+ G+ Sbjct: 13 GTRRAAREFAFRVLFEAERGKLPLETVFTRAEGDMREGDDTFAQLNAEALAFARQLVDGL 72 Query: 56 ATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 A +D ++ + E++ Q + VLR+A YE+ + P+ I A+ +A+ F Sbjct: 73 GERRADVDAALRRTIRGWDFEQMAQTDLNVLRLATYEMLYTPE-PHPPVIESAVRIARKF 131 Query: 115 GAEDSHKFVNGVLDKAAPVIRPNKK 139 G EDS +FVNGVL + ++ + Sbjct: 132 GGEDSGRFVNGVLGGLSRSLKTAPR 156 >UniRef50_Q72JL6 N utilization substance protein B homolog n=3 Tax=Thermus RepID=NUSB_THET2 Length = 151 Score = 114 bits (286), Expect = 1e-24, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 70/143 (48%), Gaps = 11/143 (7%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAE---------QDVKDVDVLYFRELLAGVA 56 RRRARE A++AL++ + + + L E + + V + R LL+G Sbjct: 2 RRRARELAMRALFAHTVGGMGLEEAFQHALEEMGGEEEGYAEPLDQEGVAFARRLLSGYK 61 Query: 57 TNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG 115 + +D +++ + ++ + + AVLR+A+YE+ P++ I A+++A +G Sbjct: 62 AHQEEVDRVLEETVEGWDFRQMAKTDLAVLRLAVYEMLYEP-TPFEPLIEVAVKIANRYG 120 Query: 116 AEDSHKFVNGVLDKAAPVIRPNK 138 E S FVNGVL + + + Sbjct: 121 GEHSGSFVNGVLARVYRRVAAGE 143 >UniRef50_B1C5S4 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C5S4_9FIRM Length = 450 Score = 114 bits (286), Expect = 1e-24, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 53/125 (42%), Gaps = 1/125 (0%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 +R A + L ++ + LA + + D ++ GV L+ ++ Sbjct: 10 SRVSAYKVLSEVLMTGAYSNIALTKHLASIKI-EADRRLCTNIVHGVIKKINKLEYVLST 68 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 + + EL + K L I LY++ + +P +N+++ L K F + + FVNG+L Sbjct: 69 LSNTPVNELDERVKISLYIGLYQIIYLNKIPEYAIVNDSVNLVKMFVGKKASGFVNGILR 128 Query: 129 KAAPV 133 A Sbjct: 129 NALRK 133 >UniRef50_D0LCQ6 Transcription antitermination factor NusB n=3 Tax=Actinomycetales RepID=D0LCQ6_GORB4 Length = 163 Score = 114 bits (286), Expect = 1e-24, Method: Composition-based stats. Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 5/136 (3%) Query: 1 MK-PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKD---VDVLYFRELLAGVA 56 MK P R +AR AV L+ + Q A + + + Y ++ G+A Sbjct: 1 MKQPGTRHKARRRAVDILFEAEAKQVSPAQLVAERRELVRSDESVGAIHDYTARVIEGLA 60 Query: 57 TNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG 115 + +D ++ +L L L V++A+LR+A +EL DV V ++EA+ELAK Sbjct: 61 DDQEQIDSVISSHLREWTLPRLPAVDRAILRLATWELFNSVDVDTVVIVDEAVELAKELS 120 Query: 116 AEDSHKFVNGVLDKAA 131 +DS FVNGVL K A Sbjct: 121 TDDSPAFVNGVLAKIA 136 >UniRef50_C7H5H8 Ribosomal RNA small subunit methyltransferase B n=2 Tax=Faecalibacterium prausnitzii RepID=C7H5H8_9FIRM Length = 440 Score = 114 bits (286), Expect = 1e-24, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 1/109 (0%) Query: 21 QLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQV 80 Q V L Q ++ D + + V + LD +++ +L + L L Sbjct: 16 QEQDGFSNLVLDAELRRQKLEGRDKAFAGAIFYTVLEHQGTLDFILEQFLPKGLARLDPQ 75 Query: 81 EKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 + +LR AL + VP A+NEA++L ++F + VN VL K Sbjct: 76 VREILRAALAQARYMQ-VPVSAAVNEAVKLTRTFKKASASGLVNAVLRK 123 >UniRef50_Q6A8H0 TRNA/rRNA cytosine-C5-methylase n=3 Tax=Propionibacterium acnes RepID=Q6A8H0_PROAC Length = 458 Score = 113 bits (285), Expect = 1e-24, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 4/130 (3%) Query: 5 ARRRA---RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 RR+A R A AL + + L + D + EL+ G + T Sbjct: 8 KRRKADPARRLAYSALLAVETHGAYANLALADHLRAAKLTGRDAAFATELVDGTSRGTGT 67 Query: 62 LDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D +++ R +L + VLR+A +++ VP + A+ +++LA E Sbjct: 68 WDRIIEAASCRAPAKLQPGVRVVLRMAAHQILAM-RVPTRAAVASSVDLAGQVIGERVTG 126 Query: 122 FVNGVLDKAA 131 VN + + + Sbjct: 127 LVNAISRRIS 136 >UniRef50_A5GRG8 Ribosomal RNA small subunit methyltransferase B n=19 Tax=cellular organisms RepID=A5GRG8_SYNR3 Length = 454 Score = 113 bits (285), Expect = 2e-24, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 44/129 (34%), Gaps = 1/129 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R A + L + + L + D EL G LDG + Sbjct: 32 RLVAWRVLEAV-GDGAYADLALERELKRSKLSPRDRGLATELAYGAIRQRRRLDGWLDLL 90 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 + + +L + L ++ VP A++ A+ELAK + VNGVL Sbjct: 91 GKVPAAKQPPRLRWLLHVGLQQILLMDRVPASAAVSTAVELAKRERLQRLAPVVNGVLRA 150 Query: 130 AAPVIRPNK 138 A + + Sbjct: 151 AVRAVEAGE 159 >UniRef50_Q0SP57 N utilization substance protein B homolog n=43 Tax=Borrelia RepID=NUSB_BORAP Length = 137 Score = 113 bits (284), Expect = 2e-24, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 72/136 (52%), Gaps = 6/136 (4%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQF-LAEQDVK---DVDVLYFRELLAGVATNTAYL 62 R A Q +YS ++Q+ + D+ F + ++ + + ++ L+ G N ++ Sbjct: 2 HEVRVLAFQKIYSIDINQSAMDDIFDIFNIEDKGLDIENESIKSFYSSLVNGTFNNLEHI 61 Query: 63 DGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRS-DVPYKVAINEAIELAKSFGAEDSH 120 D L++ L+ + +V+ A+LR+ +Y L ++ + + I++AI +AK +G+++S Sbjct: 62 DSLIRDISWNWSLDRMDKVDLAILRMGVYSLKFQNFENSKRAVIDDAILIAKKYGSKNSC 121 Query: 121 KFVNGVLDKAAPVIRP 136 KF+NG+LD + Sbjct: 122 KFINGILDALLKNMEN 137 >UniRef50_UPI0001BC31DE NusB antitermination factor n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=UPI0001BC31DE Length = 142 Score = 113 bits (284), Expect = 2e-24, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 67/142 (47%), Gaps = 13/142 (9%) Query: 4 AARRRARECAVQALYSWQLSQNDI---------ADVEYQFLAEQDVKDVDVLYFREL--- 51 R RE + L+ ++ ++ A+ E++ +D E+ Sbjct: 1 MNRTALRETVFKVLFRYEFHDSESFAGQMNLFFAEYPESGDEEENWPALDSKSAEEITGK 60 Query: 52 LAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIEL 110 + + + +D ++ ++ +G+ E +++RIA+YE+ ++ V+I+EA++L Sbjct: 61 VTDILCHIDEIDKVISEKSEGWDIDRIGKAELSIMRIAVYEILYDDNIENAVSISEAVKL 120 Query: 111 AKSFGAEDSHKFVNGVLDKAAP 132 AK +G E ++ FVNGVL K Sbjct: 121 AKKYGDEKAYGFVNGVLAKIVK 142 >UniRef50_C7H6X0 Transcription antitermination factor NusB n=3 Tax=Ruminococcaceae RepID=C7H6X0_9FIRM Length = 147 Score = 113 bits (284), Expect = 2e-24, Method: Composition-based stats. Identities = 41/130 (31%), Positives = 68/130 (52%), Gaps = 2/130 (1%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 RR ARE A +S + + + + VDV + + LL+ +++A +D Sbjct: 6 PRREARENAFLLAFSQTFGDVPLQEALDTNNECGEERPVDV-FGQRLLSAYYSHSAEVDD 64 Query: 65 LMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 L++ +L +E L +V VLR+AL E+ + V INEA+EL K +GA++ ++FV Sbjct: 65 LIRDHLRNWTMERLPRVSLTVLRLALAEMLYGDERKPGVVINEAVELTKKYGADEDYQFV 124 Query: 124 NGVLDKAAPV 133 NG+L A Sbjct: 125 NGLLGAVARE 134 >UniRef50_B9K874 Sun protein n=6 Tax=Thermotogaceae RepID=B9K874_THENN Length = 431 Score = 113 bits (284), Expect = 2e-24, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 7/125 (5%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R R A + L ++ + + L+ + D D + +EL+ GV LD Sbjct: 2 RTNVRLLAYRLLRKYEKEKFLDREDVDSVLSV--LNDRDRRFLKELVWGVMRKEELLDWY 59 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 + L ++ + LR+ +Y+L VP A++E ++L K E+ K VN Sbjct: 60 INQLLRNP--DIPPAVRVALRMGVYQLLFMDGVPDYAAVSETVKLVK---NENFKKLVNA 114 Query: 126 VLDKA 130 VL + Sbjct: 115 VLRRV 119 >UniRef50_C5R7W5 Transcription antitermination protein NusB n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5R7W5_WEIPA Length = 139 Score = 113 bits (284), Expect = 2e-24, Method: Composition-based stats. Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 7/135 (5%) Query: 1 MKPAARRRARECAVQALYSWQLSQ-NDIADVEYQFLAEQDV---KDVDVLYFRELLAGVA 56 M R + R+ A Q+L+ L+ D+ Q L +D ++ GV Sbjct: 1 MTELNRHQIRQAAFQSLFGLALNPTADVDTTITQVLVGDPEIAWEDEIPADLTSVVLGVV 60 Query: 57 TNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 LD ++ +L L+ L + ++R+ALYE +DVP K+A+NEA++LA F Sbjct: 61 AKQDELDLMITDHLSSDWTLDRLNTTDLVLMRLALYEAKF-TDVPAKIAVNEALQLAHDF 119 Query: 115 GAEDSHKFVNGVLDK 129 + S KF+NG+L+K Sbjct: 120 TDDKSRKFINGILNK 134 >UniRef50_C2GHU0 16S rRNA M(5)C 967 methyltransferase n=1 Tax=Corynebacterium glucuronolyticum ATCC 51866 RepID=C2GHU0_9CORY Length = 620 Score = 113 bits (283), Expect = 2e-24, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 45/124 (36%), Gaps = 5/124 (4%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R + AL + + + E + D + E+ G LD ++ Sbjct: 141 RLITLSALGAVFNDGAYGNIALPREITEAGLSGRDAAFATEIGYGTMRMVGVLDEIIGSC 200 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 SR + EL + LR+ +Y+L + V A++ ++ L + FVN +L Sbjct: 201 SSRPMSELDPIVLNALRMGIYQLLY-TRVEDHAAVDTSVRLV----PQRVKGFVNAILRA 255 Query: 130 AAPV 133 Sbjct: 256 VQKK 259 >UniRef50_B6BUY9 Transcription antitermination factor NusB n=1 Tax=beta proteobacterium KB13 RepID=B6BUY9_9PROT Length = 127 Score = 113 bits (283), Expect = 2e-24, Method: Composition-based stats. Identities = 42/125 (33%), Positives = 73/125 (58%) Query: 14 VQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL 73 ++++Y ++ D D++ L + D D ++ L+ G+ N + + ++ + Sbjct: 1 MKSIYRGIMNTFDYTDIKKDILEDPDYCRCDEEFYNSLIDGIKENYQEILEDLDNFMDKK 60 Query: 74 LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPV 133 EEL +E ++L +A YEL R D+P+KV+INEA+E+ KSFG ++S KFVNG LD+ A Sbjct: 61 KEELNPIELSILVVAYYELKTRVDIPFKVSINEALEITKSFGGQESFKFVNGSLDRVAKK 120 Query: 134 IRPNK 138 R + Sbjct: 121 YRALE 125 >UniRef50_Q4FPZ1 N utilization substance protein B homolog n=19 Tax=Moraxellaceae RepID=NUSB_PSYA2 Length = 375 Score = 112 bits (282), Expect = 3e-24, Method: Composition-based stats. Identities = 47/145 (32%), Positives = 75/145 (51%), Gaps = 13/145 (8%) Query: 7 RRARECAVQALYSWQLSQ-------------NDIADVEYQFLAEQDVKDVDVLYFRELLA 53 R+AR A+Q LY W ++ N D+ + A + V + Y+ E++ Sbjct: 52 RKARRFAMQGLYEWLVTDRRFDIDGKLGWKANAPHDIAARTRATNAMHTVHIGYYHEMMR 111 Query: 54 GVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKS 113 + L+ L+ L R + +L VE A+L I YEL R ++PYKV ++EA++L Sbjct: 112 DIPEQIDALNTLITQQLDREINKLDTVEHAILLIGAYELQNRLEIPYKVVLDEAMKLNNH 171 Query: 114 FGAEDSHKFVNGVLDKAAPVIRPNK 138 FGA D+HK +N VLD+ A +R + Sbjct: 172 FGATDAHKLINAVLDRMAVELRAPE 196 >UniRef50_D1BMJ1 NusB antitermination factor n=3 Tax=Veillonella RepID=D1BMJ1_VEIPT Length = 134 Score = 112 bits (282), Expect = 3e-24, Method: Composition-based stats. Identities = 45/130 (34%), Positives = 76/130 (58%), Gaps = 5/130 (3%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 RR AR+ A Q LY+ + D DV QF K +D Y ++ GV +N +D Sbjct: 6 NRREARQYAFQMLYANEF-HTDQNDV--QFPEGNIHKAMDKAYANSIIEGVLSNAEAIDA 62 Query: 65 LMKPYLS-RLLEELGQVEKAVLRIALYELSKRSD-VPYKVAINEAIELAKSFGAEDSHKF 122 ++P+ R + L +V++++LRIA++E++ + + + +AINEAI+LAK FG++ S+K Sbjct: 63 TLQPFCKSRKVANLDKVDRSILRIAVWEMNNKVEPLEPSIAINEAIQLAKEFGSDASYKL 122 Query: 123 VNGVLDKAAP 132 +N +LD Sbjct: 123 INAILDAYNK 132 >UniRef50_Q8NQ33 N utilization substance protein B homolog n=5 Tax=Corynebacterium RepID=NUSB_CORGL Length = 227 Score = 112 bits (282), Expect = 3e-24, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 6/140 (4%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQ----FLAEQDVKDVDVLYFRELLAGVAT 57 + +R +AR AV L+ + D + + Y ++ GVA Sbjct: 10 RHGSRYKARMRAVDILFEAESRDVDPVAIIDDRHKLARDTNPIVAPVAEYTETIINGVAV 69 Query: 58 NTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG 115 LD + ++ + L L V++A+LR+A +E+ +DVP AI EA+E+A + Sbjct: 70 ELDTLDVFLAEHIAETWTLGRLPSVDRAILRVASWEMIYNADVPVTTAIVEAVEIASEYS 129 Query: 116 AEDSHKFVNGVLDKAAPVIR 135 + S ++N LD A + Sbjct: 130 GDKSSAYINATLDAMASKVE 149 >UniRef50_Q1DCG5 Ribosomal RNA small subunit methyltransferase B n=2 Tax=Cystobacterineae RepID=Q1DCG5_MYXXD Length = 438 Score = 112 bits (282), Expect = 3e-24, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 49/122 (40%), Gaps = 2/122 (1%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDV-KDVDVLYFRELLAGVATNTAYLDGLMK 67 AR A+Q L + + + V L+E D EL G LD + Sbjct: 3 ARALAIQVLARVRATDAYLNVVLDTQLSESPPKDPRDAALVTELTYGATRRQLALDYAIT 62 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 + R L+ L A LRI Y++ + VP + A+ E ++ K G + F N +L Sbjct: 63 RFADRKLDALEDKVLAALRIGAYQI-FHTRVPARAAVAETVQALKEVGLTRAAGFTNAIL 121 Query: 128 DK 129 K Sbjct: 122 RK 123 >UniRef50_B5YF43 Ribosomal RNA small subunit methyltransferase B n=2 Tax=Dictyoglomus RepID=B5YF43_DICT6 Length = 430 Score = 112 bits (282), Expect = 3e-24, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 50/126 (39%), Gaps = 3/126 (2%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 R A + LY + + + + L ++ + + EL+ GV LD + Sbjct: 2 EVRLKAAEILYDLEKREAYLNLLLRSRLPSYNLSLKEKHFITELVYGVTRWKTTLDYIWS 61 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 ++ R + L + +LR+ Y + D +A+NE +E+AK K +N V Sbjct: 62 RFVKR--DNLSLFGRILLRLVAYHIYFLKDTILPIAVNEIVEIAKR-KVPKEAKLINAVS 118 Query: 128 DKAAPV 133 + Sbjct: 119 RRMVKE 124 >UniRef50_UPI0001BC2C20 NusB antitermination factor n=1 Tax=Brevibacterium linens BL2 RepID=UPI0001BC2C20 Length = 121 Score = 111 bits (280), Expect = 5e-24, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 56/111 (50%), Gaps = 1/111 (0%) Query: 21 QLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQ 79 + Q + + + D Y E++ G+ ++ +D ++ Y LE + Sbjct: 3 EAGQRRLDTEQIVTMRSNDPDYPMKAYAVEIVEGITSHREEIDEIIATYAEGWTLERMPA 62 Query: 80 VEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 V+ A+L+I +E+ +VP K AI+EA+ LA+ F +DS F++G+L + Sbjct: 63 VDLALLQIGTWEIIFNDEVPDKAAIDEAVSLARQFSTDDSPGFISGLLSRV 113 >UniRef50_D0BJY7 Transcription antitermination factor NusB n=2 Tax=Granulicatella RepID=D0BJY7_9LACT Length = 154 Score = 111 bits (279), Expect = 7e-24, Method: Composition-based stats. Identities = 41/149 (27%), Positives = 68/149 (45%), Gaps = 19/149 (12%) Query: 3 PAARRRARECAVQALYSWQLSQN-----DIADVEYQFLAEQDVKDV------------DV 45 P RR R A+QALY + ++ + EQ + ++ Sbjct: 5 PLKRRALRIIAIQALYQMDICKDLSEFDAVRLALDVLHDEQSFDEEVYSNEALLDEFPEI 64 Query: 46 LYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSK-RSDVPYKVA 103 Y +L+ GV +D L+ +L L + +++ ++R+A+ E+ +VP VA Sbjct: 65 HYSLDLIQGVQNQLEEIDALISSHLKGWELNRIVRLDLMIMRVAVCEMRSPELEVPQTVA 124 Query: 104 INEAIELAKSFGAEDSHKFVNGVLDKAAP 132 +NEAIE+AK + E S KF+NGVL Sbjct: 125 LNEAIEIAKLYSDEKSAKFINGVLSNFVE 153 >UniRef50_B0VHI6 Putative 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VHI6_9BACT Length = 438 Score = 111 bits (279), Expect = 7e-24, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 49/125 (39%), Gaps = 1/125 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R A + + + +Q + D F L+ GV LD +++ Y Sbjct: 4 RSEAYTTILKVLKDKEYSDTLLHQRAKKLKNAGEDPALFYNLVKGVIKLYLKLDYILQQY 63 Query: 70 L-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 + + + K +L + LY+L + +P A+NE +ELAK+ FVN VL Sbjct: 64 VDKKKYTDTDIKIKVLLYMGLYQLLYLNSIPDYAAVNETVELAKTLFNPQVADFVNAVLR 123 Query: 129 KAAPV 133 Sbjct: 124 NYLRN 128 >UniRef50_C0XM65 rRNA SAM-dependent methyltransferase RmsB n=3 Tax=Lactobacillus RepID=C0XM65_LACHI Length = 444 Score = 111 bits (278), Expect = 8e-24, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 3/131 (2%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 RE AV+ L + + + DVD F ++ GV + L+ + P+ Sbjct: 9 RELAVRTLLR-TSGGSYSNLQINAVIESTSMSDVDKALFTNIVYGVIQHRMTLEYQLVPF 67 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 L E+ K +L A+Y+L VP + +E+I++AKS G + + +FV G+L + Sbjct: 68 LKDS-EKTEDWVKELLYTAMYQLEYLDRVPKRAIFDESIKIAKSMGHDGTRRFVTGILHQ 126 Query: 130 AAPV-IRPNKK 139 +R K Sbjct: 127 MDRKGVREPDK 137 >UniRef50_C0W1L8 Putative uncharacterized protein n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0W1L8_9ACTO Length = 180 Score = 111 bits (278), Expect = 8e-24, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 61/139 (43%), Gaps = 6/139 (4%) Query: 4 AARRRARECAVQALYSWQLSQ-----NDIADVEYQFLAEQDVKDVDVLYFRELLAGVATN 58 ++R RAR+ A+ ++ I + + + Y E++ GV + Sbjct: 7 SSRTRARKRAIDTIFEADQRGRAESAAGINLMLEERKEITAAQTPLPEYSIEIIEGVRDH 66 Query: 59 TAYLDGLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 +D L+ + + R L V++A+LR+A +E+ VP AI+EA+ + + + Sbjct: 67 LIEIDDLLDTHTTGRTFSRLPAVDRAILRVATWEIIWNETVPDITAIDEAVRITRKISTD 126 Query: 118 DSHKFVNGVLDKAAPVIRP 136 DS VN +LD + Sbjct: 127 DSPALVNAILDAVRRDSKN 145 >UniRef50_A8YVW1 rRNA methylase n=27 Tax=Lactobacillus RepID=A8YVW1_LACH4 Length = 454 Score = 111 bits (278), Expect = 9e-24, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 60/142 (42%), Gaps = 6/142 (4%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 K + + AR +++ L + + L D+ D ++ G + Sbjct: 12 KLSTNKSARAISLETLIKVLQNGSYSNISLNNSLKHSDLSIADQNLATRIVYGTIQYRLF 71 Query: 62 LDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 L+ + L + E + K +L ++LY++ VP + ++EA +LAK FG S Sbjct: 72 LEYQLTGLLKTKITE--KYLKPLLLMSLYQIIFLDKVPNRAVLDEANKLAKQFGKHHSSG 129 Query: 122 F--VNGVLDKAAPV--IRPNKK 139 + VNG+L I P++K Sbjct: 130 YRVVNGILRAFIRRGVILPDEK 151 >UniRef50_C5WIG1 16S rRNA m(5)C 967 methyltransferase n=44 Tax=Streptococcaceae RepID=C5WIG1_STRDG Length = 452 Score = 110 bits (277), Expect = 1e-23, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 2/123 (1%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 R A+ L Q L+ + + D E++ G + L+ + Sbjct: 21 IRGKALLTLEHIFDQGAYTNIALNQQLSNKALSTKDRALLTEIVYGTVSRKISLEWYLAH 80 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH-KFVNGVL 127 Y+ ++L + +L ++LY+L +P +N+A+ +AK+ G + KFVN +L Sbjct: 81 YVKDR-DKLDKWVYYLLMLSLYQLIYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVNAIL 139 Query: 128 DKA 130 + Sbjct: 140 RQF 142 >UniRef50_C4GAK6 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GAK6_9FIRM Length = 152 Score = 110 bits (277), Expect = 1e-23, Method: Composition-based stats. Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 21/150 (14%) Query: 2 KPAARRRARECAVQALY------------SWQLSQNDIADVEYQFLAEQDVKDVDVLY-- 47 K RR+ RE A + L+ L D ++E L E++ + + Sbjct: 4 KTMIRRQIRETAFRILFVLNFCPADQMQDQLNLYFTDHTELEIDDLTEEEDQKAVIRLDQ 63 Query: 48 -----FRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYK 101 G A + +D +++ L L +V+ +LR+A+YE+ ++P Sbjct: 64 ASWPEITAKCLGAAGHLPEIDRIIEESSEGWKLSRLTKVDLTLLRLAVYEMKF-ENLPSG 122 Query: 102 VAINEAIELAKSFGAEDSHKFVNGVLDKAA 131 +AINEA+ELAK +G + S FVNGVL K + Sbjct: 123 IAINEAVELAKRYGTDKSPAFVNGVLAKIS 152 >UniRef50_B4CZF1 Sun protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CZF1_9BACT Length = 410 Score = 110 bits (277), Expect = 1e-23, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 9/129 (6%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R+ V AL W+ + ++ + L + ++ +D +F E GV N + LD L+ Sbjct: 4 RQSCVLALLEWEKGKYFSDEILHTSLEKNPMQPLDRAFFMETFFGVLRNLSRLDFLIGQL 63 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 + +AVLR+ LY++ A+NE++ L + VN +L + Sbjct: 64 REG---RIDPQTRAVLRLGLYQIFHM-RTAPHAAVNESVAL-----GGRARGLVNAILRR 114 Query: 130 AAPVIRPNK 138 A + Sbjct: 115 ALREKEALE 123 >UniRef50_Q31J86 Ribosomal RNA small subunit methyltransferase B n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31J86_THICR Length = 436 Score = 110 bits (277), Expect = 1e-23, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 49/125 (39%), Gaps = 2/125 (1%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 +R A++ + ++ + LA+ + + + L+ G L+ + Sbjct: 5 SRYIALKICLTVIEHGRSLSQSLAEGLAQFS-DRRERAFTQNLVLGTLRWQERLEAIRSH 63 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 L + L+ + ++ + LY++ D P A++E + L KS + +NGVL Sbjct: 64 LLKKPLKAKDEDVNQLILLGLYQILYM-DTPEHAAVSETVNLTKSLKKPWARGLINGVLR 122 Query: 129 KAAPV 133 Sbjct: 123 TFLRD 127 >UniRef50_C6XIX5 NusB antitermination factor n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XIX5_HIRBI Length = 163 Score = 110 bits (276), Expect = 1e-23, Method: Composition-based stats. Identities = 35/144 (24%), Positives = 68/144 (47%), Gaps = 10/144 (6%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAE--------QDVKDVDVLYFRELLA 53 + +R AR AVQALY + + V + + + ++ D FR + Sbjct: 16 RKLSRSGARLAAVQALYQIEQTGRAGRAVIEDYCEDGIGLDDEGRPIEAADPEIFRNTVE 75 Query: 54 GVATNTAYLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELA 111 GV + ++ + L+ +E L +A+LR +YEL KR D+P ++ ++E + +A Sbjct: 76 GVIESLDDINLAIVKRLADGWKIERLDATSRAILRAGVYELMKRDDLPAQIILDEYVSIA 135 Query: 112 KSFGAEDSHKFVNGVLDKAAPVIR 135 +F + +F+N +L+ +R Sbjct: 136 HAFFDDAEPRFINALLENVREDVR 159 >UniRef50_C6JJK8 N utilization substance protein B n=2 Tax=Fusobacterium RepID=C6JJK8_FUSVA Length = 132 Score = 110 bits (276), Expect = 2e-23, Method: Composition-based stats. Identities = 39/131 (29%), Positives = 79/131 (60%), Gaps = 4/131 (3%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDV--KDVDVLYFRELLAGVATNTAY 61 +RR ARE + ++ ++ + + D+ +L +++ + ++ + ++ + G+A N Sbjct: 1 MSRRLAREELFKLVFEGEIKEENTKDILESYLNREEILQNENEIAFIKKYMNGIAENNDK 60 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 + +++ ++ E +G VEKA+L+I++YE+ D PY++ INEA+ELAK +G E + Sbjct: 61 ILKVIEEKITGWSFERIGNVEKALLKISVYEIL-CEDTPYEIVINEAVELAKIYGDEKTS 119 Query: 121 KFVNGVLDKAA 131 +F+NGVL K Sbjct: 120 EFLNGVLAKIV 130 >UniRef50_A7BC97 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BC97_9ACTO Length = 320 Score = 110 bits (276), Expect = 2e-23, Method: Composition-based stats. Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 7/140 (5%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIA-DVEYQFLAEQDVKDVDV----LYFRELLAGVA 56 + +R +AR+ A ++ +V L E+ V Y +++AGVA Sbjct: 6 RFTSRTKARKRAADVVFEADQRGMGRDPEVLRDLLRERRVITAAQTPLPEYSIQIIAGVA 65 Query: 57 TNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELS-KRSDVPYKVAINEAIELAKSF 114 + +D L++ + L+ + V+ AV+R+A++E+ DV VAI+EAI + +S Sbjct: 66 DSLRRIDDLIEAHARVPGLDRVAAVDLAVMRVAVWEMLANSDDVSPIVAIDEAISIVRSI 125 Query: 115 GAEDSHKFVNGVLDKAAPVI 134 + S +FVN VLD I Sbjct: 126 STDASPRFVNAVLDAIRKDI 145 >UniRef50_C1SH03 Transcription antitermination factor NusB n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SH03_9BACT Length = 147 Score = 110 bits (275), Expect = 2e-23, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 67/143 (46%), Gaps = 6/143 (4%) Query: 1 MKPA--ARRRARECAVQALYSWQLSQNDIADVEYQFLAE-QDVKDVDVLYFRELLAGVAT 57 MK AR R R+ A +Y ++ ++ F ++ + + + L G A Sbjct: 1 MKKNFKARTRGRKFAYMMMYQLIIADYTPKEITKTFWNSVKEEDESVIEFANRLFTGAAE 60 Query: 58 NTAYLDGLMKPY--LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG 115 + D ++ Y E +G+VEK +LR+A++EL R + PY IN+ + LA+ + Sbjct: 61 SVDANDEIICRYIRSDWTYERMGEVEKDILRVAVHEL-FRQEAPYYAVINDFVTLARKYS 119 Query: 116 AEDSHKFVNGVLDKAAPVIRPNK 138 E S VNG+L+ + ++ Sbjct: 120 DEKSASLVNGILENIRKNFKLSE 142 >UniRef50_D1B5H9 NusB antitermination factor n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B5H9_THEAS Length = 148 Score = 109 bits (273), Expect = 3e-23, Method: Composition-based stats. Identities = 47/135 (34%), Positives = 69/135 (51%), Gaps = 3/135 (2%) Query: 3 PAARRRARECAVQALYSWQLSQN-DIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 P RRRARE A+Q Y + Q I +V L + Y L +G+ Sbjct: 6 PKKRRRARELALQLGYLMDMRQELGINEVLGS-LPLDEEDPEVRDYAVALTSGLYRERQR 64 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 L+G+++ L E + V++ +R+A+ E VP+ VAI+EA+ELAK FG EDS Sbjct: 65 LEGILRERLVGWRPERMVAVDRVAIRLAILEGYLERLVPFPVAISEAVELAKLFGTEDSG 124 Query: 121 KFVNGVLDKAAPVIR 135 +FVNGVL + + Sbjct: 125 RFVNGVLGRIFKDLE 139 >UniRef50_A4E6J4 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E6J4_9ACTN Length = 466 Score = 109 bits (273), Expect = 3e-23, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 3/127 (2%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR+ A+ L DV + + + D + L GVA LD L+ Sbjct: 7 ARKLALDVLMEADRRGMYARDVLSSRASAKAIDQRDSAFAARLALGVAATQGILDELLDQ 66 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 +L + +++ + LRI+ +E+ P +VA+++ +EL +S GA+ + N VL Sbjct: 67 FLDKP-KKVAPRVRMALRISAFEMLYL-HTPGRVAVSQGVELVRS-GAKSAAGLANAVLH 123 Query: 129 KAAPVIR 135 K A + Sbjct: 124 KVADNVE 130 >UniRef50_D2QU07 NusB antitermination factor n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QU07_9SPHI Length = 378 Score = 108 bits (272), Expect = 4e-23, Method: Composition-based stats. Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 7/131 (5%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R A++ L S Q + + E ++ + L N A + L+ Sbjct: 242 RGLAIRTLKSVQSATGLQLEPLTDDWEEDEL------FLNTLFEKSIENDADYEQLLADQ 295 Query: 70 LSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 L +E + ++K +L++A+ EL ++P KV INE IELAK++ S KFVNG+LD Sbjct: 296 LKNWDVERVAMIDKIILKLAVCELLSFPNIPVKVTINEYIELAKAYSTPKSGKFVNGILD 355 Query: 129 KAAPVIRPNKK 139 + + + + Sbjct: 356 NLSEKLLASGR 366 >UniRef50_C6W6R3 NusB antitermination factor n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W6R3_DYAFD Length = 388 Score = 108 bits (272), Expect = 5e-23, Method: Composition-based stats. Identities = 37/131 (28%), Positives = 55/131 (41%), Gaps = 7/131 (5%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 R A++ L + + + E D + EL V + D ++ Sbjct: 251 IRSLAIKTLRTADDAHTFQLAPLTKDWEE------DRAFVEELCKIVIRESDQYDVYLED 304 Query: 69 YLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 L LE + V+ +L+ AL EL +P KV INE IE+AK + S KFVNGVL Sbjct: 305 QLKNWELERIALVDLIILKTALAELIHFPGIPVKVTINEFIEIAKRYSTPKSGKFVNGVL 364 Query: 128 DKAAPVIRPNK 138 D + + Sbjct: 365 DVLSVKLAKEG 375 >UniRef50_A4CML6 NusB family protein n=2 Tax=Flavobacteria RepID=A4CML6_9FLAO Length = 366 Score = 108 bits (271), Expect = 5e-23, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 1/100 (1%) Query: 41 KDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVP 99 D+ + +LL A L+ ++ E + +++ +L++ + EL +P Sbjct: 258 NSEDMEFAMDLLRKTLNKNAALEAEIEGKTPNWDKERIAEIDGILLKMGIAELLYFPSIP 317 Query: 100 YKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 +V INE +E+AK + S F+NG+LDK R + Sbjct: 318 ERVTINEYLEIAKEYSTPKSSIFINGILDKLIREYREAGR 357 >UniRef50_C1A605 Putative rRNA methyltransferase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A605_GEMAT Length = 428 Score = 108 bits (271), Expect = 5e-23, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 40/99 (40%) Query: 35 LAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSK 94 + D + +EL+ GV + LD ++ + L L +LR+ Y+L Sbjct: 13 RRTPTLDARDRRWVQELVWGVLRHRERLDAILATRIRGGLSVLDDGVLDILRLGTYQLLS 72 Query: 95 RSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPV 133 VP AI +++E K + K VN VL + Sbjct: 73 MDSVPPYAAIGQSVEAVKRKHGIGAGKLVNAVLRRIDRE 111 >UniRef50_C4G0T0 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G0T0_ABIDE Length = 138 Score = 108 bits (271), Expect = 6e-23, Method: Composition-based stats. Identities = 35/137 (25%), Positives = 66/137 (48%), Gaps = 1/137 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 RR RE + ++ + +++ A+ D + + + A +D Sbjct: 1 MTRREFREHTAKLIFIFDFYPEAEWKEQFESYADYSEIKEDREGLWQRVMALEEKKAEVD 60 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 L+ + + L + + +LR+A+YE+ S++P KV++NEA+ELAK +G ++S F Sbjct: 61 SLIDGASKKWRISRLSKTDLMLLRVAVYEIKFDSEIPDKVSVNEAVELAKIYGGDESPAF 120 Query: 123 VNGVLDKAAPVIRPNKK 139 VNGVL K ++ Sbjct: 121 VNGVLAKFMSGEEAKEE 137 >UniRef50_A8G3E0 Sun protein (Fmu protein) n=7 Tax=Prochlorococcus marinus RepID=A8G3E0_PROM2 Length = 438 Score = 108 bits (271), Expect = 6e-23, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 1/126 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R+ A + L S + + L +D+ + EL G +LD Sbjct: 8 RKAAWEILLKV-SSGDFSDHALEKVLKNYQFNSLDIAFITELSFGCIRYRKFLDLWTDHT 66 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 ++ + +L I LY+L K +P+ AI+ +E+AK VN +L Sbjct: 67 SKITHKKQPPKLRWLLHIGLYQLLKMDKIPFPAAISTTVEVAKKTDLNGLAGTVNAILRN 126 Query: 130 AAPVIR 135 A+ + Sbjct: 127 ASRKLE 132 >UniRef50_C0VVY3 Possible rRNA SAM-dependent methyltransferase RmsB n=1 Tax=Corynebacterium glucuronolyticum ATCC 51867 RepID=C0VVY3_9CORY Length = 470 Score = 108 bits (270), Expect = 8e-23, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 5/110 (4%) Query: 24 QNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKA 83 + + E + D + E+ G LD ++ SR + EL + Sbjct: 5 GAYGNIALPREITEAGLSGRDAAFATEIGYGTMRMVGVLDEIIGSCSSRPMSELDPIVLN 64 Query: 84 VLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPV 133 LR+ +Y+L + V A++ ++ L + FVN +L Sbjct: 65 ALRMGIYQLLY-TRVEDHAAVDTSVRLV----PQRVKGFVNAILRAVQKK 109 >UniRef50_C2KZE7 Putative uncharacterized protein n=1 Tax=Oribacterium sinus F0268 RepID=C2KZE7_9FIRM Length = 185 Score = 107 bits (269), Expect = 1e-22, Method: Composition-based stats. Identities = 34/143 (23%), Positives = 58/143 (40%), Gaps = 16/143 (11%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVD---------------VLYF 48 +R R+ + L+S + + + +D D + Sbjct: 1 MNKREERDHKFKLLFSTLFYPEEGKQEQLSHYSYSKEEDEDFLLPEKEEEHLSEEEEAFL 60 Query: 49 RELLAGVATNTAYLDGLMKPYLSRLL-EELGQVEKAVLRIALYELSKRSDVPYKVAINEA 107 + + + +LD + + + + VLR+ALYEL + + P KV NEA Sbjct: 61 SQEVMKILERLPHLDERINAVTEGWTTSRMSKTDLTVLRLALYELEYQEETPDKVVFNEA 120 Query: 108 IELAKSFGAEDSHKFVNGVLDKA 130 +E+AK +G DS FVNGVL + Sbjct: 121 VEIAKKYGGADSGSFVNGVLARI 143 >UniRef50_D0MH27 Sun protein n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MH27_RHOM4 Length = 453 Score = 107 bits (269), Expect = 1e-22, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 2/125 (1%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR AV+ L + Q + + L ++ + E +AGV +LD L+ Sbjct: 14 ARREAVRLLERIENDQAYVNRLMSAGLTDELEPEAGRR-ATEYVAGVTRWRRWLDFLLAQ 72 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 + + + +LR+ LYEL +D P A+NEA+ELA+ + VN VL Sbjct: 73 NYRGRYDSMEPRLRQILRLGLYELLF-TDTPPYAALNEAVELARRLVRPQAGAVVNAVLR 131 Query: 129 KAAPV 133 Sbjct: 132 SLLRQ 136 >UniRef50_C7GZX3 16S rRNA M(5)C 967 methyltransferase n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZX3_9FIRM Length = 461 Score = 107 bits (269), Expect = 1e-22, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 50/129 (38%), Gaps = 5/129 (3%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R A ALY+ + + + + + + + REL+ G LD M + Sbjct: 11 RLAAFWALYNIE-KGKYSNVAFEE--STKGLSAREAAFVRELVFGTLKLNIKLDHAMN-H 66 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 L + ++ +LR+ LY+L VP A+NE I +AK +N +L Sbjct: 67 LKDKKARIKLKDRILLRLGLYQLDYMDSVPDYAAVNETIAIAKKLVKNK-VGLINAILRG 125 Query: 130 AAPVIRPNK 138 + + Sbjct: 126 YIRKRQEIE 134 >UniRef50_C6I119 Transcription antitermination factor (NusB) n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6I119_9BACT Length = 180 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 35/142 (24%), Positives = 68/142 (47%), Gaps = 6/142 (4%) Query: 3 PAARRRA----RECAVQALYSWQLSQNDIAD-VEYQFLAEQDVKDVDVLYFRELLAGVAT 57 P++RRRA R +Q L++ + D + + + + Y L A + Sbjct: 9 PSSRRRALSAARGKVLQRLFAEEYESRPSPDPLLKDLIGWEGEDPMANAYADRLYAEILF 68 Query: 58 NTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 +D +++ L L +V++ +LRI L E+ +P++V+++EA++LA F Sbjct: 69 RKPEIDAVIEELARGWSLPRLTRVDRNILRIGLCEILFDPAMPFRVSVHEALDLAHRFSD 128 Query: 117 EDSHKFVNGVLDKAAPVIRPNK 138 ++ F+NG+L +A P K Sbjct: 129 PEAVSFLNGILHEAGVRHAPEK 150 >UniRef50_D1VSE3 Ribosomal RNA small subunit methyltransferase B n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSE3_9FIRM Length = 430 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 59/128 (46%), Gaps = 1/128 (0%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 R+ A+ + + + + + + ++ D D + + + GV N YLD ++K Sbjct: 4 IRQKALFIIDNVYNKGAFLEEQL-NIIKQSNISDRDFTFIKNITTGVIRNRTYLDYVIKI 62 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 +++ ++ +L +A+Y+ +P ++E+++LAK +G + S FVN +L Sbjct: 63 NSKIRFKKIHKIIAIILEMAIYQYYFLDKIPNYSIVDESVKLAKLYGNKGSSSFVNAILR 122 Query: 129 KAAPVIRP 136 + Sbjct: 123 NIVSKDKE 130 >UniRef50_A1B2A9 NusB antitermination factor n=43 Tax=Rhodobacterales RepID=A1B2A9_PARDP Length = 166 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 40/139 (28%), Positives = 61/139 (43%), Gaps = 14/139 (10%) Query: 12 CAVQALYSWQLSQNDIADVEYQFL------AEQDVK----DVDVLYFRELLAGVATNTAY 61 AVQAL+ + + V+ +FL ++D + D F ++ T + Sbjct: 27 YAVQALFQMEAAGQSADRVQREFLNWRIGREDEDDDIVSAEADQALFTRIVDDAVTWQSK 86 Query: 62 LDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE-D 118 +D + L ++ + V ++V R A EL P KV I E + LA++F AE Sbjct: 87 IDQMTDRALVAKWPIDRIDPVLRSVFRAAGAELV-TPKTPPKVVITEYVRLAQTFFAEGR 145 Query: 119 SHKFVNGVLDKAAPVIRPN 137 KFVN VLD A RP Sbjct: 146 ESKFVNAVLDHMAREARPE 164 >UniRef50_A1V9B6 NusB/RsmB/TIM44 n=3 Tax=Desulfovibrio vulgaris RepID=A1V9B6_DESVV Length = 507 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 49/124 (39%), Gaps = 1/124 (0%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR A+ AL + + D+ L+ + D EL+ G + L L++ Sbjct: 36 ARAGALVALDAVVRAGVDVQAALDDSLSHASLSRQDAALCTELVYGYLRSEIRLSWLVRR 95 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 +L +L A+L +A YEL++ VP ++ A+ ++ + N VL Sbjct: 96 FLKAP-SKLPPGVLALLCLAAYELTQCDRVPAYATLDWAVSAVRALYGTGVSRLANAVLR 154 Query: 129 KAAP 132 Sbjct: 155 NVDR 158 >UniRef50_C7PI91 NusB antitermination factor n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PI91_CHIPD Length = 309 Score = 106 bits (267), Expect = 2e-22, Method: Composition-based stats. Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 1/101 (0%) Query: 40 VKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDV 98 + + Y RELL V Y L+KP L E + V+ ++ + + E + Sbjct: 200 ISREKLEYARELLLTVLDKKEYCLELIKPKLQNWDPERIAAVDMLLMEMGVCEFLYFPTI 259 Query: 99 PYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 P KV INE I+LAK++ S +FVNG+LD + + Sbjct: 260 PTKVTINEYIDLAKAYSTPQSGQFVNGILDNILKDLDQANQ 300 >UniRef50_D2L7S0 NusB/RsmB/TIM44 n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L7S0_9DELT Length = 451 Score = 106 bits (267), Expect = 2e-22, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 52/137 (37%), Gaps = 13/137 (9%) Query: 9 ARECAVQALYSWQLSQ-----------NDIADVEYQFLA-EQDVKDVDVLYFRELLAGVA 56 AR+ A+ L ++ D+ LA + + D EL+ G Sbjct: 12 ARKLALAVLGRVFPAKGAARGPGPGGGQDVQAALDTALAGTKGLDPRDRGLATELVYGYL 71 Query: 57 TNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 +D ++ +L + E + + VL +A+YE+ S VP +++ A+ + Sbjct: 72 RLCGRIDWMLSRFLKKP-EAVPLPVRRVLGLAVYEILYCSRVPAYASVDWAVSAVRRLSG 130 Query: 117 EDSHKFVNGVLDKAAPV 133 + N VL + A Sbjct: 131 KGLGGMANAVLRRVAAD 147 >UniRef50_A8GMD2 N utilization substance protein B homolog n=15 Tax=Rickettsia RepID=NUSB_RICAH Length = 156 Score = 106 bits (267), Expect = 2e-22, Method: Composition-based stats. Identities = 38/150 (25%), Positives = 61/150 (40%), Gaps = 15/150 (10%) Query: 2 KPAARRRARECAVQALYS-WQLSQNDIADVEYQFLAEQDVKDV------------DVLYF 48 K + AR AVQA+Y + +D+ D+ L+ + +F Sbjct: 5 KINKKSIARIAAVQAIYQNILQNNDDMDDIMQNVLSFYRNDSSITNLTGNLKISLSISHF 64 Query: 49 RELLAGVATNTAYLDGLMKPYLSRLLE--ELGQVEKAVLRIALYELSKRSDVPYKVAINE 106 + L+ V N LD ++ +L+ + + + +A+LR +YEL P KV INE Sbjct: 65 KILVKSVFENINKLDEIIDNHLTNDKDPAHMPILLRALLRAGIYELLFYPTTPAKVVINE 124 Query: 107 AIELAKSFGAEDSHKFVNGVLDKAAPVIRP 136 ++A FVN VLD A Sbjct: 125 YTDIANDMLNGYEIGFVNSVLDTIAKEKNK 154 >UniRef50_Q607V0 N utilization substance protein B homolog n=1 Tax=Methylococcus capsulatus RepID=NUSB_METCA Length = 198 Score = 106 bits (267), Expect = 2e-22, Method: Composition-based stats. Identities = 51/114 (44%), Positives = 71/114 (62%) Query: 25 NDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAV 84 + Q ++ V DV V YF+ELL GVA N A LD + YL R ++E+ VE+A+ Sbjct: 78 EEEDVTLEQRASQCQVPDVQVGYFKELLHGVANNLALLDAALAKYLDRPIDEVDPVERAI 137 Query: 85 LRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 LRI YE +R + PY+V +NEAI LAK FGA S+++VNG+LD+ A R + Sbjct: 138 LRIGCYEFMRRPETPYRVILNEAINLAKEFGAAQSYRYVNGILDRVAHECRAVE 191 Score = 39.2 bits (91), Expect = 0.048, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 25/38 (65%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKD 42 AR AR AVQA+Y WQL+++ + D+E QF+ E + Sbjct: 4 ARTLARRAAVQAVYQWQLARDSLPDIERQFVEELQLAK 41 >UniRef50_C6BVK4 NusB/RsmB/TIM44 n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BVK4_DESAD Length = 427 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 45/123 (36%), Gaps = 2/123 (1%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R A + + D V L + D + E+L G L ++ + Sbjct: 11 RGVAYECVTRSLDGGADAQAVLDNALTAAKLDGRDRGFVTEILYGYLRMRLRLQSVLNCF 70 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 LSR + L VL +A YE+ DVP +++ ++ AK N VL K Sbjct: 71 LSRP-DGLPAPILRVLGMAAYEILHM-DVPAYASVDWGVDSAKRLSRGKLGGLANAVLRK 128 Query: 130 AAP 132 A Sbjct: 129 VAR 131 >UniRef50_C2KVE0 Possible rRNA (Cytosine-5-)-methyltransferase n=1 Tax=Oribacterium sinus F0268 RepID=C2KVE0_9FIRM Length = 449 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 1/117 (0%) Query: 24 QNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEK 82 I + ++ + + + + G+ LD ++ Y S L++L V Sbjct: 60 GEFIHLALRKLFSDYPGLGNREKAFLTRSSHGILERYLQLDYVISLYSSVKLKKLKPVVL 119 Query: 83 AVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 LRIA+Y+L +P ++EA++ K + FVN VL K KK Sbjct: 120 LSLRIAIYQLLFMDKIPEHAIVDEAVKSIKKRKLQGLVPFVNAVLRKIVGEKEEIKK 176 >UniRef50_A9BJY1 NusB antitermination factor n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BJY1_PETMO Length = 151 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 68/132 (51%), Gaps = 4/132 (3%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLY---FRELLAGVATNTAY 61 +R R+ ++L+ + + ++ + F + ++ Y ++ + + N Sbjct: 14 KKRMMRKLIFESLFQLSIKDVKLDNILFTFEKLNEQAHLEESYYLEAKQYIEDIYKNKNE 73 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 D L+ Y +E +G +EK V+RI +YEL + D+P KV +NE+ EL K++ + + Sbjct: 74 YDALINKYSEGWRVERIGNIEKTVMRIFIYELINKKDIPVKVILNESTELTKTYATQKAA 133 Query: 121 KFVNGVLDKAAP 132 FVNG++DK A Sbjct: 134 AFVNGIMDKIAR 145 >UniRef50_UPI0001BC6038 transcription antitermination protein NusB n=3 Tax=Fusobacterium RepID=UPI0001BC6038 Length = 138 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 70/136 (51%), Gaps = 5/136 (3%) Query: 1 MK-PAARRRARECAVQALYSWQLSQNDIADVEY--QFLAEQDVKDVDVLYFRELLAGVAT 57 M+ RR ARE + ++ ++ N + E + +V L+ G+A Sbjct: 1 MREKMTRREAREELFKWIFQTEIQGNSMEKAFEYSSLREEIEKDEVTKLFLERYRKGLAE 60 Query: 58 NTAYLDGLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 + ++ ++ + +G VEK++L++A+YE+ D+P ++ +NEA+E+AK +G Sbjct: 61 HREEIETKIQAAMTDWDFSRIGYVEKSLLKLAVYEM-YFEDLPVEIIVNEAVEIAKIYGD 119 Query: 117 EDSHKFVNGVLDKAAP 132 +H+F+NGVL K Sbjct: 120 VKTHEFINGVLAKVIK 135 >UniRef50_C0QI57 RsmB n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QI57_DESAH Length = 455 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 1/121 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAE-QDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 R A+ L + S+ + + ++ A+ + + D ++ G +LD L+ P Sbjct: 17 RFLALTILIENESSKFTLDKILERYSAQLESLAHRDRALANAIIYGTLRWKEHLDWLITP 76 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 + R L+++ LR ALY+ +P A+N A+ AK + FVN VL Sbjct: 77 FSKRPLDQIEPAICYTLRTALYQTVFMDKIPVSAAVNTAVNAAKKLSNTGAAGFVNAVLR 136 Query: 129 K 129 K Sbjct: 137 K 137 >UniRef50_Q2WB24 tRNA and rRNA cytosine-C5-methylase n=3 Tax=Alphaproteobacteria RepID=Q2WB24_MAGSA Length = 431 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 50/135 (37%), Gaps = 2/135 (1%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK A+ R AV L + DV ++D D + R LL Sbjct: 1 MKRASSTSPRAIAVDLLSMVLDKGRLLDDVLDDSR-LSRLEDRDRGFVRMLLGTTLRRLG 59 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D L++ L + + + LR+ + +L DV AI+ ++L K Sbjct: 60 QIDTLIEHCLDKPMRAGAAGAEHALRLGICQLLFL-DVAPHAAISTTVDLVKGSKLAGFA 118 Query: 121 KFVNGVLDKAAPVIR 135 K +N VL + R Sbjct: 119 KLLNAVLRRLDREGR 133 >UniRef50_C9L054 NusB family protein n=34 Tax=Bacteroidales RepID=C9L054_9BACE Length = 308 Score = 106 bits (265), Expect = 3e-22, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 55/129 (42%), Gaps = 6/129 (4%) Query: 12 CAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLS 71 ++ + + + ++ +F D D + R L N+ Y L+ Sbjct: 181 FVLKTIKRFDEKKGANQELLPEF-----KDDEDQEFARRLFRRTILNSDYYRHLISENTK 235 Query: 72 RL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 L+ + ++ +++ AL E+ ++P V++NE +E+AK + S F+NG LD Sbjct: 236 NWDLDRIAFMDIIIMQTALAEILSFPNIPVSVSLNEYVEIAKLYSTSKSGSFINGTLDGI 295 Query: 131 APVIRPNKK 139 ++ K Sbjct: 296 VNQLKKEGK 304 >UniRef50_UPI000174635C RsmB n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI000174635C Length = 414 Score = 106 bits (265), Expect = 3e-22, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 50/125 (40%), Gaps = 8/125 (6%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 +R+ A+Q L W+ S+ AD+ + A + D + L+ G N LD ++ Sbjct: 8 SRQLALQILVEWERSEIYAADLIEKAAATHRLDHRDTALLQTLVMGTLRNIDLLDIWLER 67 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 + L +LR+ + +L ++P +NE + A + VN VL Sbjct: 68 VCDN--QHLETSVHWLLRLGIAQLL-LLEMPAHAVVNETVNQA-----GKARGLVNAVLR 119 Query: 129 KAAPV 133 + Sbjct: 120 RVDRE 124 >UniRef50_C2BPE4 Transcription antitermination protein NusB n=2 Tax=Corynebacterium RepID=C2BPE4_9CORY Length = 221 Score = 106 bits (265), Expect = 3e-22, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 56/124 (45%), Gaps = 6/124 (4%) Query: 15 QALYSWQLSQNDIADVEYQFL----AEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL 70 LY + D + + +++ Y + ++ GVA +D + +L Sbjct: 27 DILYEAENRDVDPVAIVEDRIALAREDRNAVAPVAEYTQVIVKGVAEELDAIDDTISRFL 86 Query: 71 --SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 L + V++A+LR++++EL D+P A+ E +E+A + + + +++ VLD Sbjct: 87 AEDWELHRIPAVDRAILRLSVWELLFNPDIPTATAVVEGVEIASQYSNDQAAPYIHAVLD 146 Query: 129 KAAP 132 A Sbjct: 147 DVAQ 150 >UniRef50_Q044I1 Transcription termination factor n=18 Tax=Lactobacillus RepID=Q044I1_LACGA Length = 133 Score = 106 bits (265), Expect = 3e-22, Method: Composition-based stats. Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 4/133 (3%) Query: 4 AARRRARECAVQALYSWQLSQ-NDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 + R A+QA+Y + +V + L ++K Y E++ GV N L Sbjct: 1 MTQHEMRRIAMQAIYLANQGNLTNAEEVCQKALKALELKSF-PDYSTEIVNGVLANKKAL 59 Query: 63 DGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 D + YL L + +++ A+L +ALYE+ + A+NEA+ L F +++S Sbjct: 60 DEQLSKYLKKGWRLNRINEIDLAILEVALYEMQNSKVIEPVAALNEALNLCDEFSSKESK 119 Query: 121 KFVNGVLDKAAPV 133 KFVNG+L Sbjct: 120 KFVNGLLANFIKK 132 >UniRef50_B5FCW8 Ribosomal RNA small subunit methyltransferase B n=14 Tax=Gammaproteobacteria RepID=B5FCW8_VIBFM Length = 451 Score = 106 bits (265), Expect = 3e-22, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 51/123 (41%), Gaps = 3/123 (2%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R A + +Y + ++ + A+ ++K D +E+ GV L+ + + Sbjct: 29 RAAAAKVIYQVVDQGHSLSSALPK--AQSEIKPRDQALLQEICYGVLRFLPRLESVAQSL 86 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 + + L+ +V ++ + +Y+LS +P A+ E +E K+ +N VL Sbjct: 87 MDKPLKGKQRVFHHLILVGIYQLSFM-RIPAHAAVAETVEGTKNLKGPKLRGLINAVLRN 145 Query: 130 AAP 132 Sbjct: 146 YQR 148 >UniRef50_C0GN53 NusB/RsmB/TIM44 n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GN53_9DELT Length = 417 Score = 105 bits (264), Expect = 3e-22, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 45/123 (36%), Gaps = 2/123 (1%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R A+ + D+ V + L + ++ D EL G LD ++ + Sbjct: 8 RAVALNVVLDALRPGRDLQMVLDRNL-DPEMDLRDRSLATELAYGYLRYKGRLDFVLNCF 66 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 L L + ++ +A YE+ +P A++ A+ L + VN VL K Sbjct: 67 LKSP-AGLSGKIRVLMGLAAYEIFFLERIPDYAAVSRAVALTRKRFGSRMSSLVNAVLRK 125 Query: 130 AAP 132 Sbjct: 126 CCR 128 >UniRef50_C7M0X2 NusB antitermination factor n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M0X2_ACIFD Length = 145 Score = 105 bits (264), Expect = 4e-22, Method: Composition-based stats. Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 11/130 (8%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 RE ++ LY AD+ + + RE + G+ + +D + + Sbjct: 16 RERVLELLYEADTKGEAPADLLR---------GDEPAFIRERIRGLTERRSEIDAQLTAH 66 Query: 70 LSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 + LE L +++A+LR+A EL + P VAI EA++LA + E S FVNGVL Sbjct: 67 VIGWQLERLAPIDRAILRLATAELL-EASTPPSVAIAEAVKLADRYSTERSAAFVNGVLA 125 Query: 129 KAAPVIRPNK 138 A I Sbjct: 126 SIAVDIAGEG 135 >UniRef50_C0QT45 N utilization substance protein B homolog n=2 Tax=Aquificales RepID=NUSB_PERMH Length = 142 Score = 105 bits (263), Expect = 5e-22, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 4/132 (3%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAE--QDVKDVDVLYFRELLAGVATNTAYLD 63 R++ARE + LY++ + D+ ++ + + + V Y +L G+ + +D Sbjct: 5 RKKAREIVFRTLYTYDIKGGDLFEIMEDHIKDIRGKLSKKTVDYIYSILKGIDEHLPEID 64 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF-GAEDSHK 121 +++ L LE LG E+A+LR+ +YEL + ++L K + D+ K Sbjct: 65 DILRENLKNWRLERLGYPERALLRLGVYELLFSDIEDKGRVFMDILDLTKCYIDNPDTVK 124 Query: 122 FVNGVLDKAAPV 133 F+NGVL Sbjct: 125 FINGVLSTVYKN 136 >UniRef50_Q9CHN4 N utilization substance protein B homolog n=1 Tax=Lactococcus lactis subsp. lactis RepID=NUSB_LACLA Length = 192 Score = 105 bits (263), Expect = 5e-22, Method: Composition-based stats. Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 3/102 (2%) Query: 33 QFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLS--RLLEELGQVEKAVLRIALY 90 + ++ YF +L+ GV L+ + YL+ L VE+A+L+++ Y Sbjct: 92 NYDNDRPEDLEAPEYFTQLVDGVLDKKEDLEANISKYLTKTWSFSRLTLVEQAILQVSSY 151 Query: 91 ELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAP 132 E+ ++ P VA+NEA+EL+K F E S +F+NGVL Sbjct: 152 EILY-TETPDVVAVNEAVELSKDFSDEKSSRFINGVLTNFLK 192 >UniRef50_C6XRR6 Fmu (Sun) domain protein n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XRR6_HIRBI Length = 487 Score = 105 bits (263), Expect = 5e-22, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 51/132 (38%), Gaps = 2/132 (1%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 ++R A L D+ + +++ D + R + + +D ++ Sbjct: 62 QSRRAAADILMRIVHEGADMDEALASSKFFDELEGPDRGFARAIASAALRAFGRIDDALE 121 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG-AEDSHKFVNGV 126 YL R LE++ ++LR+ +L P A++ +E A+ + A VN + Sbjct: 122 TYLDRPLEKIDPAVLSLLRVGCAQL-WVLKAPSYAAVDATVEAARQWKPASRGGGMVNAI 180 Query: 127 LDKAAPVIRPNK 138 L +A + Sbjct: 181 LRRAGREPEAYE 192 >UniRef50_Q2SSR7 RRNA methyltransferase RsmB (Sun protein), putative n=4 Tax=Mollicutes RepID=Q2SSR7_MYCCT Length = 428 Score = 105 bits (262), Expect = 6e-22, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 60/124 (48%), Gaps = 4/124 (3%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 +R A L +++ + + ++++++ D + L+ GV +N +LD L+ Sbjct: 12 SRSIAFDILKKVFVNKAYSNVLLNK-ISKKNLNQQDKDFVFNLVHGVISNKIHLDYLLAK 70 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 + +++ + +L I+LY++ + +P +NE++ L K+ + F+N +L+ Sbjct: 71 LID--VKKTSIDLQVILLISLYQMIYLNSIPNYAIVNESVNLIKTTS-QKQANFINAILN 127 Query: 129 KAAP 132 K Sbjct: 128 KFLR 131 >UniRef50_Q04EK8 Transcription termination factor n=2 Tax=Oenococcus oeni RepID=Q04EK8_OENOB Length = 130 Score = 105 bits (262), Expect = 6e-22, Method: Composition-based stats. Identities = 45/129 (34%), Positives = 74/129 (57%), Gaps = 5/129 (3%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 +R++ RE + QA+++ +++ + + + L +Q+ D YF EL+ GV L+ Sbjct: 4 SRQQIRELSFQAIFALEINSDQDKALLKKVLFKQNTID---DYFNELVDGVFAVHKELEE 60 Query: 65 LMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 KPYL LE + + ++I L+EL+ R D+P KV++++A ELAK+FG E KF Sbjct: 61 KYKPYLKDNWSLERISKTADIAMQIGLFELTSRIDIPKKVSLDQATELAKNFGDESDGKF 120 Query: 123 VNGVLDKAA 131 VNGVL Sbjct: 121 VNGVLAHFV 129 >UniRef50_C0WL14 Transcription antitermination protein NusB n=1 Tax=Corynebacterium accolens ATCC 49725 RepID=C0WL14_9CORY Length = 211 Score = 105 bits (262), Expect = 6e-22, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 55/124 (44%), Gaps = 6/124 (4%) Query: 15 QALYSWQLSQNDIADVEYQ----FLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL 70 LY + D + ++ Y + ++ GVA +D + YL Sbjct: 27 DILYEAENRDVDPVAIVEDRVALAREDRHAVAPIADYTKVIVQGVAEELDAIDDTISRYL 86 Query: 71 --SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 + L + V++A+LR++++EL DVP A+ E +ELA + + + +++ VLD Sbjct: 87 SQNWELHRIPAVDRAILRLSVWELLFNPDVPTATAVVEGVELASQYSHDQAAPYIHAVLD 146 Query: 129 KAAP 132 A Sbjct: 147 DVAQ 150 >UniRef50_C3WQ58 16S rRNA m(5)C 967 methyltransferase n=15 Tax=Fusobacterium RepID=C3WQ58_9FUSO Length = 435 Score = 104 bits (260), Expect = 1e-21, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 49/129 (37%), Gaps = 5/129 (3%) Query: 11 ECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL 70 + A+ + + ++ + + E+ GV N +LD +++ Sbjct: 5 QVAINLISQVD-KGAYSNIALNETFKTLNINSKEKAFITEIFYGVIRNKKFLDYIIEKNT 63 Query: 71 SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 + +E + +LRI++Y+++ K + EA ELAK KF+NG L Sbjct: 64 KEIKKE---WIRNLLRISIYQITFMDS-DNKGVVWEATELAKKKYGVPISKFINGTLRNY 119 Query: 131 APVIRPNKK 139 K Sbjct: 120 LRNKDSELK 128 >UniRef50_B0JGZ3 N utilization substance protein B homolog n=12 Tax=Cyanobacteria RepID=NUSB_MICAN Length = 217 Score = 104 bits (260), Expect = 1e-21, Method: Composition-based stats. Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 2/96 (2%) Query: 45 VLYFRELLAGVATNTAYLDGLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVA 103 Y EL+ V A ++ + L L L ++++ +L+IA+ E+ D+P KVA Sbjct: 117 REYALELIGTVYRRRAEIEQELTGALVDWQLHRLPRIDRDILQIAVAEMLYL-DLPQKVA 175 Query: 104 INEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 INEAIELAK + ++ ++F+NGVL + + ++K Sbjct: 176 INEAIELAKRYSDDEGYRFINGVLRRVTNKLNESEK 211 >UniRef50_C7RHU9 NusB antitermination factor n=2 Tax=Anaerococcus RepID=C7RHU9_ANAPD Length = 127 Score = 104 bits (260), Expect = 1e-21, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 62/130 (47%), Gaps = 6/130 (4%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 R RE + +Y + I+ +E A +++ D + R+ ++ N + +D Sbjct: 1 MNRVEQREWVFKLIYQ-----DSISKIEDIDKALEELDLTDEDFVRKSISSFLNNFSSID 55 Query: 64 GLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 + L + L +V +++L +++ E+ D+P V+INEA+ LAK + ED +K V Sbjct: 56 EKLTSNLDSKRKRLSKVLRSILYLSINEMYFM-DIPVSVSINEAVNLAKKYSDEDDYKLV 114 Query: 124 NGVLDKAAPV 133 N +L Sbjct: 115 NSILGSIVRK 124 >UniRef50_C5PR17 N utilization substance protein n=2 Tax=Sphingobacterium spiritivorum RepID=C5PR17_9SPHI Length = 307 Score = 104 bits (260), Expect = 1e-21, Method: Composition-based stats. Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 2/129 (1%) Query: 13 AVQALYSWQLSQNDIADVEYQFLAEQDVK-DVDVLYFRELLAGVATNTAYLDGLMKPYLS 71 +QAL + + LAE D + +LLA L+ Sbjct: 169 VLQALIAKTFKNFSSEIPQQNKLAELTQNWLDDREFVLDLLANTIRYGEEYQSLIAAKTK 228 Query: 72 RL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 + + ++ ++R+A+ EL S +P KV INE IEL+K F S+ F+NG+LDK Sbjct: 229 NWEADRIALLDTILMRMAICELINFSSIPVKVTINEYIELSKVFSTLKSNTFINGILDKI 288 Query: 131 APVIRPNKK 139 + + Sbjct: 289 LADLNQQGR 297 >UniRef50_Q1MPZ7 TRNA and rRNA cytosine-C5-methylases n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MPZ7_LAWIP Length = 447 Score = 104 bits (260), Expect = 1e-21, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 50/140 (35%), Gaps = 5/140 (3%) Query: 2 KPAARRR---ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATN 58 K R++ ARE A AL I + L + D+ EL+ G Sbjct: 8 KYTNRKKTKTAREIATIAL-QKIKEGQPIQVLLNNILLTYPLSKQDIALVTELVYGYLRL 66 Query: 59 TAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 + +++ +L + E L K ++ +A YEL +P I+ A+ KS + Sbjct: 67 EIRIVWILEQFLKKS-EHLPYEVKLIIGLATYELLFLDKIPPYATIHTAVSTIKSKFGKI 125 Query: 119 SHKFVNGVLDKAAPVIRPNK 138 N L + N Sbjct: 126 LAGVANASLQTIFRKSKHND 145 >UniRef50_D1R943 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R943_9CHLA Length = 187 Score = 104 bits (260), Expect = 1e-21, Method: Composition-based stats. Identities = 37/127 (29%), Positives = 53/127 (41%), Gaps = 1/127 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 RE LYS + ++ + E V E + V A +D L+ Sbjct: 9 REVVFVLLYSQDCGRVSEQELVELVMKELAVTKKTAYSALEKVELVLEKKAEIDDLIANT 68 Query: 70 LSR-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 E + VEK VLR+ +YE+ +P KVAI EAI L++ F +S FVN +LD Sbjct: 69 SREYRFERIQTVEKNVLRLGIYEMLFDDSIPPKVAIAEAIRLSRKFSTPESATFVNALLD 128 Query: 129 KAAPVIR 135 Sbjct: 129 HIYQTKE 135 >UniRef50_C8WHT5 NusB/RsmB/TIM44 n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WHT5_EGGLE Length = 473 Score = 103 bits (259), Expect = 1e-21, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 6/132 (4%) Query: 3 PAARRRA---RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNT 59 R +A R A+ + + + DV + D+ D + +L GV + T Sbjct: 21 KKPRSKASPARLAALDVVRAVRERDAFAQDVIGTRIDRSDLSSEDRAFATKLALGVVSAT 80 Query: 60 AYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 LD ++ L+ + + + LR++ YE+ P A+++ +EL +SF + Sbjct: 81 GTLDEIIDRALNAPSD-VKPDVRDALRVSTYEIIFLGKTP-HAAVDQGVELVRSFAM-SA 137 Query: 120 HKFVNGVLDKAA 131 N VL K Sbjct: 138 SGLANAVLRKIV 149 >UniRef50_Q12TA7 Sun protein n=8 Tax=Gammaproteobacteria RepID=Q12TA7_SHEDO Length = 428 Score = 103 bits (259), Expect = 2e-21, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 45/124 (36%), Gaps = 2/124 (1%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R A +A++ ++ + D EL GV LD + Sbjct: 5 RALAAKAIFDVLEKGLSLSVALP-LQQQHVQNGKDKALLAELCYGVMRQLPQLDKCVSDC 63 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 L++ + ++ +L + Y+L + +P A++E E + + K VNGVL Sbjct: 64 LAKPFKGKQRILHQLLLVGCYQL-YFTRIPSHAAVSETAEACRQLKFDGLVKVVNGVLRN 122 Query: 130 AAPV 133 Sbjct: 123 IQRQ 126 >UniRef50_Q2SQX3 Sun protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SQX3_HAHCH Length = 447 Score = 103 bits (258), Expect = 2e-21, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 57/141 (40%), Gaps = 11/141 (7%) Query: 1 MKPAARRR---ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVAT 57 MK RR+ AR A + L + + L + V++ D + + L G Sbjct: 1 MK---RRKTLSARAAAAKTLRAVAEEGRSLTTAMAPALEQ--VEENDRSFLQALCYGACR 55 Query: 58 NTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 + L+ + L + ++ + +L L++L+ P V+INE + + K Sbjct: 56 HYLTLEHWLGQLLRQPIKAKERDIHFLLLSGLHQLAFMDK-PAHVSINETVNVTKELNKL 114 Query: 118 DSHKFVNGVLDKAAPVIRPNK 138 + K VNGVL R ++ Sbjct: 115 WATKLVNGVLRSFQR--RKDE 133 >UniRef50_Q030T8 Transcription termination factor n=3 Tax=Lactococcus lactis RepID=Q030T8_LACLS Length = 325 Score = 103 bits (258), Expect = 2e-21, Method: Composition-based stats. Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 3/103 (2%) Query: 33 QFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALY 90 + ++ YF +L+ GV L+ + YL + L VE+A+L+++ Y Sbjct: 223 NYDNDRAEDLEAPEYFTQLVDGVLEKKEDLEINISKYLAKNWSFSRLTLVEQAILQVSTY 282 Query: 91 ELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPV 133 E+ +D P VA+NEAIEL+K F E S +F+NGVL Sbjct: 283 EILF-TDTPNVVAVNEAIELSKDFSDEKSSRFINGVLTNFLKE 324 >UniRef50_C3WZH3 Transcription antitermination protein NusB n=4 Tax=Fusobacterium RepID=C3WZH3_9FUSO Length = 157 Score = 103 bits (258), Expect = 2e-21, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 63/140 (45%), Gaps = 10/140 (7%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAE--------QDVKDVDVLYFRELLAGVATN 58 R ARE + ++ +L+ + +++ F + + + + + + G+ N Sbjct: 17 RLAREEVFKLVFGAELTGSSSDELKQDFSIYLQNDEEFINALSEKQLEFIKNSINGIVEN 76 Query: 59 TAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 + ++K E +G +E+++L + YE + P +V NE +ELAK +G E Sbjct: 77 YDNIKDVIKKNTQNWTYERIGVIERSLLIVGTYEFL-IKNTPIEVIANEIVELAKEYGNE 135 Query: 118 DSHKFVNGVLDKAAPVIRPN 137 S++F+NG+L Sbjct: 136 KSYEFINGILANIEKAKNKG 155 >UniRef50_A9FBW8 Sun protein n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FBW8_SORC5 Length = 496 Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 49/129 (37%), Gaps = 1/129 (0%) Query: 12 CAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNTAYLDGLMKPYL 70 A + L S + L + D+ EL+ GV A L+ + + Sbjct: 33 VAARVLARVWGSDAFASAALDAELRRAPALDPRDIGLATELVYGVLRAQAALEARIAEFA 92 Query: 71 SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 ++ + +A + + Y L VP A++EA++ A++ G F N VL + Sbjct: 93 AKSRWTADPLVRAHVLMGAYSLCFLDRVPSFAAVSEAVDGAQAAGGPRVGAFANAVLRRL 152 Query: 131 APVIRPNKK 139 A + + Sbjct: 153 AAAVESGGR 161 >UniRef50_A8RBL8 Putative uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=A8RBL8_9FIRM Length = 126 Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 7/130 (5%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 +R + RE A+ +LY L DI + Y+ ++ + + Sbjct: 2 TLSRHKLREIAMTSLYQHFLLSKDIKECVYENTQSNEIDP----FLYTITIDAIRYKDTY 57 Query: 63 DGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 G + L E LG VEKA+L +A EL + P + I+EA+ LAK + ED++ Sbjct: 58 VGHIDETLRDDWTFERLGYVEKAILLMAACELDFET-APKAIVIDEAVNLAKKYCDEDTY 116 Query: 121 KFVNGVLDKA 130 + +NGVLD+ Sbjct: 117 RLINGVLDRL 126 >UniRef50_C7LUK3 Sun protein n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LUK3_DESBD Length = 424 Score = 103 bits (257), Expect = 3e-21, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 2/118 (1%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR A+ L + D+ + L D EL G +D L+ Sbjct: 6 ARRLALDILRRTLDHKQDLQAAVDEVLNPVQ-AGPDKGLATELAYGYLRMRGRIDFLLSQ 64 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGV 126 L + + + K +L +A+YEL S +P ++ A+ L + + K NGV Sbjct: 65 LLKNPV-QTSPIMKRILGVAMYELLFLSRIPDYATLDWAVTLVRERLDQTMGKVANGV 121 >UniRef50_UPI0001699525 transcription antitermination protein NusB n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001699525 Length = 182 Score = 102 bits (256), Expect = 3e-21, Method: Composition-based stats. Identities = 42/86 (48%), Positives = 58/86 (67%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 R +AR AVQA+Y WQ++ D+A + QFL EQD+ +V YF++LL GV N LDG Sbjct: 4 KRSQARRHAVQAIYQWQMAGQDLAAIYEQFLGEQDLSQFEVPYFKDLLHGVPNNLQELDG 63 Query: 65 LMKPYLSRLLEELGQVEKAVLRIALY 90 L+KP L R +E + VE+AVLR+ +Y Sbjct: 64 LLKPALDRAIESVDPVERAVLRLGVY 89 >UniRef50_P74395 N utilization substance protein B homolog n=16 Tax=Cyanobacteria RepID=NUSB_SYNY3 Length = 221 Score = 102 bits (256), Expect = 3e-21, Method: Composition-based stats. Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 2/90 (2%) Query: 45 VLYFRELLAGVATNTAYLDGLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVA 103 + EL+ V +D ++ + L L ++++ +LR+A+ EL VP KVA Sbjct: 120 RKFALELIGTVCRRRQQIDEQLQEAMVDWQLSRLAKIDQDILRLAIAELDYL-GVPQKVA 178 Query: 104 INEAIELAKSFGAEDSHKFVNGVLDKAAPV 133 INEA+ELAK + +D H+F+NGVL + Sbjct: 179 INEAVELAKRYSGQDGHRFINGVLRRVTEK 208 >UniRef50_A5EWM0 RRNA SAM-dependent methyltransferase, Fmu n=2 Tax=Cardiobacteriaceae RepID=A5EWM0_DICNV Length = 418 Score = 102 bits (255), Expect = 4e-21, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 53/126 (42%), Gaps = 4/126 (3%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 +ARE A + L++ + + + F + + D+D ++EL+ G L L Sbjct: 2 KAREAAARTLFAVIEQRQSLNQLLPAF--KNQLPDIDRALYQELVYGTLREYRSLSFLHN 59 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 L + L++ + +L + +Y+L + + + ++E +EL K N VL Sbjct: 60 RLLHQPLDK-NPLPAIILNLGIYQLLRLT-LGDHGVVHETVELCKKLRCPAVSGLTNAVL 117 Query: 128 DKAAPV 133 + Sbjct: 118 RRVQRE 123 >UniRef50_C9Q172 N utilization substance protein NusB n=9 Tax=Prevotella RepID=C9Q172_9BACT Length = 372 Score = 102 bits (255), Expect = 4e-21, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 49/116 (42%), Gaps = 2/116 (1%) Query: 25 NDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKA 83 + + + L E + D + R+L N M L ++ Sbjct: 189 DPANKAKQELLPEYK-DEEDKDFARKLFRSTILNADQYQRYMSENSRNWDFSRLAYMDVV 247 Query: 84 VLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 +++IA+ E+ ++P V INE +ELAK + S ++NG+LD A + + + Sbjct: 248 IMQIAIAEMLTFPNIPVSVTINEYVELAKLYSTHRSGGYINGMLDTIARGLIAHGQ 303 >UniRef50_A1ZKP0 NusB antitermination factor n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZKP0_9SPHI Length = 462 Score = 102 bits (255), Expect = 4e-21, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 7/121 (5%) Query: 21 QLSQNDIADVEYQFLAEQDVK------DVDVLYFRELLAGVATNTAYLDGLMKPYLSRL- 73 + D + E ++ D DV++++ L + ++ Sbjct: 325 EEEDGDAEETEITINKNFELSPLSKNWDEDVVFYKNLYNFNVEGNQRYEDIIAKKTKNWD 384 Query: 74 LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPV 133 +E L ++K +L++A+ E+ +P KV INE IELAK++ S KFVNG+LD A Sbjct: 385 IERLALIDKVILKMAICEMINFYSIPVKVTINEYIELAKTYSTPKSKKFVNGLLDSIAQD 444 Query: 134 I 134 + Sbjct: 445 L 445 >UniRef50_Q8EKR0 Ribosomal RNA small subunit methyltransferase B n=20 Tax=Gammaproteobacteria RepID=RSMB_SHEON Length = 428 Score = 102 bits (255), Expect = 4e-21, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 47/127 (37%), Gaps = 2/127 (1%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R A +A++ ++ + D EL GV ++ Sbjct: 4 RALAAKAIFDVLEKGVSLSVALPEQQKHLA-SGKDKALLAELCYGVMRTLPQIEKRTAEC 62 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 L++ L+ ++ +L + Y+L + +P AI+E E + E K VNGVL Sbjct: 63 LAKPLKGKQRIIHQLLIVGCYQL-YFTRIPSHAAISETAEACRQLKFEGMVKVVNGVLRN 121 Query: 130 AAPVIRP 136 + P Sbjct: 122 IQRQLTP 128 >UniRef50_C2KPZ2 Possible transcription antitermination protein NusB n=2 Tax=Mobiluncus mulieris RepID=C2KPZ2_9ACTO Length = 182 Score = 101 bits (254), Expect = 6e-21, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 14 VQALYSWQLSQNDIADVEYQFLAEQDVKDVDV----LYFRELLAGVATNTAYLDGLMKPY 69 + LY L D + Y ++ + Y RE+L GVA + +D + Y Sbjct: 1 MDVLYEAHLKDLDDSAGIYSLAKLRETETTAQTPMPPYAREILEGVAEHLDRIDAALATY 60 Query: 70 LS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 L + +V+ A++R+A +E+ DV VAI A++LA ++S KF+NG+L Sbjct: 61 SRAWSLHRMPEVDLAIMRVATWEILFNPDVDGPVAITAAMQLAAERSTDESPKFINGLLG 120 Query: 129 KA 130 Sbjct: 121 TI 122 >UniRef50_C3J8Y9 NusB family protein n=2 Tax=Bacteria RepID=C3J8Y9_9PORP Length = 348 Score = 101 bits (254), Expect = 6e-21, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 57/130 (43%), Gaps = 6/130 (4%) Query: 11 ECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL 70 E A+++ + + + + + D ELL + ++ L Sbjct: 220 EFALKS-----MRKAKPDTSFDEVIIPAYKDEEDTHLAAELLRTTIVHEEEYREIINKNL 274 Query: 71 SRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 ++ + V+ +L++AL EL +P V +NE IELAK + +S FVNG+LD Sbjct: 275 RNWDMDRVTDVDMIILQMALAELLSFPTIPTTVTLNEYIELAKIYSTAESGVFVNGLLDS 334 Query: 130 AAPVIRPNKK 139 A +R ++ Sbjct: 335 ALHQLRNERR 344 >UniRef50_A0M4D8 Antitermination protein NusB n=8 Tax=Bacteroidetes RepID=A0M4D8_GRAFK Length = 337 Score = 101 bits (253), Expect = 6e-21, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 1/100 (1%) Query: 41 KDVDVLYFRELLAGVATNTAYL-DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVP 99 + D + +L N L + ++ + + + +V+ ++++A+ E K + +P Sbjct: 229 NEEDKEFAIKLFRKTYLNDEDLSEEMLGKTPNWDKDRIAEVDMVLIKMAICEFLKFTSIP 288 Query: 100 YKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 KV INE +E+AK + S F+NGVLDK + + K Sbjct: 289 VKVTINEYLEIAKEYSTPKSSIFINGVLDKLSKEYQTEDK 328 >UniRef50_Q2G467 N utilization substance protein B homolog n=7 Tax=Sphingomonadales RepID=NUSB_NOVAD Length = 148 Score = 101 bits (253), Expect = 6e-21, Method: Composition-based stats. Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 10/128 (7%) Query: 18 YSWQLSQNDIADVEYQF--------LAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 Y + Q + + +F + + + DV +F +++ GV +DGL+ Sbjct: 21 YQADMEQTPLHLLLDEFHQHRLGAEIEDVEYAKADVAFFDDVVKGVDARRDEIDGLLSAR 80 Query: 70 LS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 L+ L L + +LR YEL R DV I E +++A +F E KFVNG+L Sbjct: 81 LAKGWALPRLDRTMLQILRAGAYELMARRDVNVGTVITEYVDVAHAFFEEREAKFVNGLL 140 Query: 128 DKAAPVIR 135 D A +R Sbjct: 141 DAVAKDVR 148 >UniRef50_C0AZZ3 Putative uncharacterized protein n=1 Tax=Proteus penneri ATCC 35198 RepID=C0AZZ3_9ENTR Length = 194 Score = 101 bits (253), Expect = 7e-21, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 56/133 (42%), Gaps = 5/133 (3%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK + R A +A+ ++ V + ++++ D D +E+ GV Sbjct: 1 MKTS--YNLRSIAAKAINQVLDQGLSLSTVIPEL--QKNISDKDKALLQEICFGVLRTLP 56 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 L+ +++ + + L+ ++ ++ + LY+L + +P A+ E + A + Sbjct: 57 QLEWIIQQLMDKPLKGKQRILHYLIMVGLYQLLY-TRIPAHAALAETVNGAVALKKPQLK 115 Query: 121 KFVNGVLDKAAPV 133 +NGVL + Sbjct: 116 GLINGVLRQFQRQ 128 >UniRef50_D0J9N1 Antitermination protein NusB n=2 Tax=Blattabacterium RepID=D0J9N1_BLASP Length = 312 Score = 100 bits (251), Expect = 1e-20, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 1/100 (1%) Query: 41 KDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVP 99 D + + L + + L+ + +E + ++ +L++A+ E ++P Sbjct: 204 NDENKKFIVSLYRNTIFHKREFNELISNISNNWNIERIAIIDLIILQMAICEFLYFPNIP 263 Query: 100 YKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 K +NE IE+AK F + S F+NG+LD+ ++ N K Sbjct: 264 PKATMNEYIEIAKIFCMDKSKTFINGILDQVFKLLHKNNK 303 >UniRef50_Q0C0J1 N utilization substance protein B homolog n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=NUSB_HYPNA Length = 154 Score = 100 bits (251), Expect = 1e-20, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 10/133 (7%) Query: 14 VQALYSWQLSQNDIADVEYQFLAEQ--------DVKDVDVLYFRELLAGVATNTAYLD-G 64 VQALY + ++ +F+ ++ V+D D F+ ++ V + A +D Sbjct: 22 VQALYEMEQTEKSARATIREFMEDRLGLGPDGTPVEDADPDLFKSIVNSVVEHQAKIDTA 81 Query: 65 LMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 ++ L L +A+LR E ++ + ++E + LA F E KF Sbjct: 82 ILARLAEGWKLTRLDATMRALLRAGAAEFIAHQELSDAIILSEYVSLAHDFFDEGDAKFA 141 Query: 124 NGVLDKAAPVIRP 136 N VL +R Sbjct: 142 NAVLQNMGRDLRA 154 >UniRef50_C2MAV6 NusB family protein n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2MAV6_9PORP Length = 347 Score = 100 bits (251), Expect = 1e-20, Method: Composition-based stats. Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 1/100 (1%) Query: 41 KDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLL-EELGQVEKAVLRIALYELSKRSDVP 99 D D LY +LL+ + D ++ P L + + V+ ++ +A+ E D+ Sbjct: 245 SDRDRLYAHQLLSETLLHREEYDAMLTPRLDNWEQDRVALVDMILMEMAVAEALSCPDIA 304 Query: 100 YKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 V INE IELAK + S F+N VLD+ ++ K Sbjct: 305 LVVTINEYIELAKVYDNAKSASFINAVLDRLFTDLKGEGK 344 >UniRef50_A6EGS9 Putative N utilization substance protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6EGS9_9SPHI Length = 297 Score = 100 bits (251), Expect = 1e-20, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 1/95 (1%) Query: 42 DVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPY 100 + D + +L A L+ E + ++ ++++A+ EL +P Sbjct: 188 EEDRKFVEDLFAYTLRKDKEYQELIADRTKNWESERIALMDTILMKMAICELMNFPSIPV 247 Query: 101 KVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIR 135 KV INE ++L+K + S+ F+NG+LDK ++ Sbjct: 248 KVTINEYLDLSKDYSTPKSNSFINGILDKILGDLK 282 >UniRef50_C7MNL0 tRNA/rRNA cytosine-C5-methylase n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MNL0_CRYCD Length = 500 Score = 100 bits (250), Expect = 1e-20, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 3/122 (2%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR AV+ + + +D+ L + + D + R L+ GV LD ++ Sbjct: 7 ARRLAVEIGRDARERKAFASDLLDARLGKSGLNAADRAFTRVLVLGVVATVGTLDEVIGR 66 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 L R + +G + LR++ YE+ + VA+++ +ELA +F + + N VL Sbjct: 67 CLDRAGD-VGLQLRDALRVSTYEIIFLNK-DAYVAVDQGVELA-AFVQPRARRLANAVLR 123 Query: 129 KA 130 + Sbjct: 124 RI 125 >UniRef50_D1R8R5 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R8R5_9CHLA Length = 417 Score = 100 bits (250), Expect = 1e-20, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 55/128 (42%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 ARE A A+YS+ +++ + ++ +D + +++ G LD + K Sbjct: 6 AREAAFLAVYSFLKEGKFLSESLENWKQKESPSSLDFSFAQDIAYGSVRMALALDYIAKS 65 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 R L E+++LR A+Y+ + + P E+ LAK + F+N +L Sbjct: 66 TAERQSLSLKVKERSLLRTAIYQAAFQRSTPLYAIGQESGNLAKKYCHPTFSSFLNALLR 125 Query: 129 KAAPVIRP 136 K I P Sbjct: 126 KLGSGIPP 133 >UniRef50_C0BGT7 Transcription antitermination factor NusB n=1 Tax=Flavobacteria bacterium MS024-2A RepID=C0BGT7_9BACT Length = 314 Score = 100 bits (250), Expect = 2e-20, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 1/119 (0%) Query: 22 LSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL-DGLMKPYLSRLLEELGQV 80 L D+ + D + +LL V N + L + L+ + E + Q+ Sbjct: 187 LKHIDVNSSQTLTFPRPSENKEDTDFGIQLLEKVIANDSKLQEELLGKTPNWDAERIAQL 246 Query: 81 EKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 + +L++A+ EL +P KV +NE +E+AK + S+ FVNGVLDK + Sbjct: 247 DNVILKVAIAELLYFPMIPSKVTLNEYLEIAKDYSTPKSNNFVNGVLDKLVKEFDHENR 305 >UniRef50_Q2RN41 tRNA and rRNA cytosine-C5-methylase n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RN41_RHORT Length = 438 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 47/118 (39%), Gaps = 3/118 (2%) Query: 14 VQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL 73 + L + + DV A + ++ D + R L A L+ ++K +L R Sbjct: 13 LDLLSAVLDHGRPLDDVFDA--ATRKLEPRDRAFARLLAATTLRRMGRLEKVIKTFLDRP 70 Query: 74 LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAA 131 L K +LR+ ++ D P A+ ++++A+ +N VL K A Sbjct: 71 LPRRAVGAKHILRLGAAQMLFL-DTPPHAAVATSVDVARVRRLAPYAGLINAVLRKVA 127 >UniRef50_C1A8F7 Antitermination protein NusB n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A8F7_GEMAT Length = 157 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 46/130 (35%), Positives = 69/130 (53%), Gaps = 3/130 (2%) Query: 7 RRARECAVQALYSWQLSQ-NDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R R A+QALY+ L + + + + + L+ L+A VA A LD Sbjct: 26 TRGRARALQALYAADLRDLTQVKRIATTVFDDLAIDPAERLFASRLIATVADRGAVLDAA 85 Query: 66 MKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + + LE LG +E++VLR+A EL+ R + P KV + EA+ LA+ +G E S +FVN Sbjct: 86 LVEVTANWRLERLGAIERSVLRLAAAELA-REETPVKVVLQEAVHLAERYGTERSARFVN 144 Query: 125 GVLDKAAPVI 134 GVLD A + Sbjct: 145 GVLDAYARRL 154 >UniRef50_Q2VBT2 NusB n=1 Tax=uncultured Bacteroidetes bacterium 'SBI2-18 P41A3' RepID=Q2VBT2_9BACT Length = 325 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 1/100 (1%) Query: 41 KDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVP 99 D D + EL+ V N L + E + Q++ +L++ L E +P Sbjct: 205 NDEDAEFGIELIKYVIENKEMLQDEISKVTPNWDNERIAQIDLILLQMCLSEFLFFKSIP 264 Query: 100 YKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 KV+INE +E+AK + ++ S+ F+NG++D + + Sbjct: 265 LKVSINEYLEIAKEYSSDKSNIFINGIMDSLSKQFENEGR 304 >UniRef50_Q7NKZ0 N utilization substance protein B homolog n=1 Tax=Gloeobacter violaceus RepID=NUSB_GLOVI Length = 211 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 64/119 (53%), Gaps = 2/119 (1%) Query: 22 LSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQV 80 +++ + +F+ D + Y ELL LD L+ + +E L ++ Sbjct: 91 INRVGASLELPEFVRLAD-ELQVRAYAFELLGAFVREGDNLDKLLDTCMEGWQVERLTRI 149 Query: 81 EKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 ++ +LR+AL E+ + VP++VAI+EA+ELAK + + + +F+NGVL + ++ ++ Sbjct: 150 DRDILRLALVEMVELKSVPFRVAIDEAVELAKKYSTDTAVRFINGVLRRVVQHLQLEQR 208 >UniRef50_B7S425 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7S425_PHATR Length = 413 Score = 99.6 bits (248), Expect = 3e-20, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 49/134 (36%), Gaps = 8/134 (5%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLM 66 R AR A +AL + S D + D + R L+ +D ++ Sbjct: 75 RNARFLAARALITKTGSAAFAVDRLESNKHYSTLSTRDRSFARLLVTTTERRLGQIDEVL 134 Query: 67 KPY---LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELA----KSFGAEDS 119 + + Q +A LRI +L VP A+ E +EL K+ E Sbjct: 135 RQCQKETKSRPNRVDQFVQAALRIGATQLLFL-KVPEHAAVKETVELLRHDPKTTVPESR 193 Query: 120 HKFVNGVLDKAAPV 133 KFVN VL + + Sbjct: 194 IKFVNAVLRRISRE 207 >UniRef50_UPI0001BC65B2 16S rRNA m(5)C 967 methyltransferase n=2 Tax=Fusobacterium RepID=UPI0001BC65B2 Length = 440 Score = 99.3 bits (247), Expect = 3e-20, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 44/124 (35%), Gaps = 4/124 (3%) Query: 16 ALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLE 75 AL + + K + + E+ GV N YLD ++ + E Sbjct: 9 ALLQEVDQGKYSNIALNELFHRKVFKKGEKNFITEVFYGVIRNKIYLDYMISQKVK---E 65 Query: 76 ELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIR 135 + + R++ Y++ K I E +ELAK +FVNGVL Sbjct: 66 VKKDWLQQLFRLSFYQIRFMKS-DDKGVIWEGVELAKKKYGVSVSRFVNGVLRNFQRSFI 124 Query: 136 PNKK 139 ++ Sbjct: 125 EEEE 128 >UniRef50_A8RCQ7 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RCQ7_9FIRM Length = 415 Score = 99.3 bits (247), Expect = 3e-20, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 45/129 (34%), Gaps = 5/129 (3%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR A L + + + L Q V D +++ G N + + Sbjct: 3 ARAYAFALLKEICIDEGYSNLLLRNKL--QSVDPKDKALVTQIVYGTLQNYRLVRYQWQS 60 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 Y+ + + +L +++Y+L +P I+EA+ + K VN VL Sbjct: 61 YVKKEPCK---EVALLLDMSVYQLLYMDKMPAYAVIDEAVRITKKNIHPRFSALVNAVLR 117 Query: 129 KAAPVIRPN 137 + + Sbjct: 118 QVERNGKRE 126 >UniRef50_B1A1G7 Putative N utilization substance protein (Fragment) n=1 Tax=Flammeovirga yaeyamensis RepID=B1A1G7_9SPHI Length = 200 Score = 99.3 bits (247), Expect = 4e-20, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 1/99 (1%) Query: 42 DVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPY 100 D D +F +L ++ + ++ + +V+ ++ +AL E+ ++P Sbjct: 90 DEDKEFFEDLYKYTLEQEESFKEIIAKKSKKWAIDRIAKVDSILINMALAEMLNFRNIPV 149 Query: 101 KVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 KV INE IE++K + S +F+NG+LD + + K Sbjct: 150 KVTINEFIEISKQYSTPKSWQFINGMLDSISEELEAEGK 188 >UniRef50_B8J9P4 NusB/RsmB/TIM44 n=4 Tax=Anaeromyxobacter RepID=B8J9P4_ANAD2 Length = 455 Score = 98.1 bits (244), Expect = 7e-20, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 48/128 (37%), Gaps = 2/128 (1%) Query: 9 ARECAVQALYSWQLSQNDIA-DVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 AR A L + + ++ A + + EL+ G LD + Sbjct: 12 ARGIAFDVLRRVEEGGAYASRALDAALGAAGALDPREAGLATELVYGTLRRALALDAALA 71 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 P+ R L EL + LR+ Y+L P A+ E + LAK+ + +VN VL Sbjct: 72 PHSRRALAELDPAARVALRLGAYQLLVL-GTPAHAAVGETVALAKAVDHGRAAGYVNAVL 130 Query: 128 DKAAPVIR 135 + R Sbjct: 131 RSLSRAAR 138 >UniRef50_A6GX17 N utilization substance protein B homolog (NusBprotein) n=7 Tax=Flavobacteriales RepID=A6GX17_FLAPJ Length = 303 Score = 98.1 bits (244), Expect = 8e-20, Method: Composition-based stats. Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 1/100 (1%) Query: 41 KDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVP 99 D + L VA N L + + +++ +L++A+ E K +P Sbjct: 195 DTEDKEFVGNLFRKVALNDQQLAKEFADKTPNWEADRIAEIDTIILKMAICEFLKFPSIP 254 Query: 100 YKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 KV INE +ELAK + S F+NG+LD N K Sbjct: 255 VKVTINEYLELAKEYSTPKSSIFINGILDNLVKEFESNDK 294 >UniRef50_B2VK95 Ribosomal RNA small subunit methyltransferase B n=3 Tax=Erwinia RepID=RSMB_ERWT9 Length = 429 Score = 98.1 bits (244), Expect = 8e-20, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 53/133 (39%), Gaps = 5/133 (3%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK R A Q + +++V A++ V D D +EL GV Sbjct: 1 MKKMT--NLRCIAAQTIEKVVEQGQSLSNVLPA--AQKSVGDKDAALLQELCYGVLRTLP 56 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 L+ ++ +SR + + ++ + LY+L + +P A+ E +E A + Sbjct: 57 QLEWVIGRLMSRPMTGKQRAVHFLIMVGLYQLMF-TRIPAHAALAETVEGAVALKRPQLK 115 Query: 121 KFVNGVLDKAAPV 133 +NGVL + Sbjct: 116 GLINGVLRQFQRQ 128 >UniRef50_Q2JHC7 N utilization substance protein B homolog n=3 Tax=Bacteria RepID=NUSB_SYNJB Length = 291 Score = 98.1 bits (244), Expect = 9e-20, Method: Composition-based stats. Identities = 32/92 (34%), Positives = 53/92 (57%), Gaps = 1/92 (1%) Query: 41 KDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVP 99 Y +LL + T+ +D ++ L L+ +G++E+ +LR+A+ E+ + P Sbjct: 179 SQEVRAYALQLLTALRTHKEAIDARLQKALVGWQLQRVGRIERDILRLAVVEMEILASSP 238 Query: 100 YKVAINEAIELAKSFGAEDSHKFVNGVLDKAA 131 KVAINEA+ELAK +G ++ FVNGVL + Sbjct: 239 VKVAINEAVELAKKYGDPEAAAFVNGVLRRVV 270 >UniRef50_C3RL93 Predicted protein n=4 Tax=Bacteria RepID=C3RL93_9MOLU Length = 134 Score = 98.1 bits (244), Expect = 9e-20, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 68/134 (50%), Gaps = 5/134 (3%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDV--DVLYFRELLAGVATN 58 MK ++ RE AV A Y L + ++ +++D+ D Y + +A+N Sbjct: 1 MKKYRKKIIREKAVIATYQKLLVDTNEDEIREYLNSDKDLSSNQDDFDYCFMFIISIASN 60 Query: 59 TAYLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 + YL L+ L ++E A+L + YEL ++ +V INEA+EL+K + Sbjct: 61 IERYKAEVAKYLKPGWTLDRLSKMELAILLVGCYELL-ETEQSKEVIINEAVELSKKYCD 119 Query: 117 EDSHKFVNGVLDKA 130 D++KF+NG+L++ Sbjct: 120 SDAYKFINGLLNRI 133 >UniRef50_B5YIL4 Sun protein n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YIL4_THEYD Length = 441 Score = 97.7 bits (243), Expect = 9e-20, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 5/129 (3%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R+ AV+ L + ++ + + + D + E++ GV N Y+D L++ + Sbjct: 7 RKVAVEVLNNVVGTKKPLKFALTENI-LSMFDKADRAFLLEVIYGVLRNLYYIDWLLEDF 65 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 E+L LR A+Y+L +P NE + + KSF + VN +L Sbjct: 66 YKSR-EKLSMYTINNLRCAIYQLVFM-HIPAYAVANETVNVEKSFNGK--PNVVNAILRN 121 Query: 130 AAPVIRPNK 138 + ++ Sbjct: 122 FLRKYQADE 130 >UniRef50_Q14PA1 Putative ribosomal rna small subunit methyltransferase protein n=1 Tax=Spiroplasma citri RepID=Q14PA1_SPICI Length = 423 Score = 97.7 bits (243), Expect = 9e-20, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 50/124 (40%), Gaps = 4/124 (3%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNTAYLDGLM 66 +ARE A L+ + + + D D D ++ G N YL+ + Sbjct: 2 QAREVAWNILWKIFAKNKFSNHLLSNIVEQNDNFIDQDKTLIYRIVYGTLKNKLYLEYIA 61 Query: 67 KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGV 126 ++ ++ Q + +L +++Y+ +P +NEA+ ++KS F+N Sbjct: 62 NQFIES--KKTNQKLQILLWMSIYQFRFLDRIPNYAIVNEAVNISKSVS-PKYAGFINTT 118 Query: 127 LDKA 130 L K Sbjct: 119 LKKI 122 >UniRef50_B4U865 NusB antitermination factor n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U865_HYDS0 Length = 139 Score = 97.7 bits (243), Expect = 1e-19, Method: Composition-based stats. Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 3/132 (2%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQF--LAEQDVKDVDVLYFRELLAGVATNTAYLD 63 R RARE A ++LY+W +S +I+ + + +++ +K Y + N +D Sbjct: 5 RARAREIAFRSLYAWDISGGEISIISQEIINMSKPPLKKDSQKYTLLITKKFGENIENID 64 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + YL L++LG +EKA+LR A EL AI + IE+A ++G + + F Sbjct: 65 KKIASYLENWNLDDLGSIEKAILRTAFTELLYIKPKKNIQAIIDYIEIASNYGNKKTPSF 124 Query: 123 VNGVLDKAAPVI 134 +NG+L K + I Sbjct: 125 INGILSKLSKDI 136 >UniRef50_C2D8V4 Putative uncharacterized protein n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D8V4_9ACTN Length = 537 Score = 97.3 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 53/123 (43%), Gaps = 3/123 (2%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 +R A +AL + + + D F A + + + + ++ GV ++ + +D ++ Sbjct: 9 SRTVAFKALCALRKNTTYAQDFLKHFDAFCALLQDEKSFVQHVVCGVISSQSMVDKILAQ 68 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 Y+ R LR+A YEL R +++ +EL + + FVN VL Sbjct: 69 YVKR-FAHQPYKVLICLRMATYELVYRQ-TAAYAVVSQYVELVR-LVDKRGASFVNAVLH 125 Query: 129 KAA 131 + A Sbjct: 126 RIA 128 >UniRef50_C9M539 Transcription antitermination factor NusB n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M539_9BACT Length = 165 Score = 97.3 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 36/144 (25%), Positives = 57/144 (39%), Gaps = 21/144 (14%) Query: 10 RECAVQALYSWQ--------------------LSQNDIADVEYQFLAEQDVKDVDVLYFR 49 R AVQAL++ +++ + + D Sbjct: 18 RFLAVQALFALDSSADPAGTLRLLADDWELLGFHGDELEIDDETASQLPAISAEDCGAAV 77 Query: 50 ELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAI 108 + V ++ +D L+ P L L L V++A+LR+ +E V VA +EA+ Sbjct: 78 QWAERVWSHLDQVDSLIAPCLRGWRLPRLDGVDRAILRLCFFESRVEGSVNDAVAASEAV 137 Query: 109 ELAKSFGAEDSHKFVNGVLDKAAP 132 LAK+ G E S KFVNGV+ Sbjct: 138 ILAKAMGGEQSAKFVNGVIGSIMR 161 >UniRef50_A3HY11 Putative N utilization substance protein n=1 Tax=Algoriphagus sp. PR1 RepID=A3HY11_9SPHI Length = 394 Score = 97.3 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 50/99 (50%), Gaps = 1/99 (1%) Query: 42 DVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPY 100 + D +F+ + N A L+ ++ L +K ++ +AL E+ +P Sbjct: 284 EEDKEFFQNIFNFTLENEAESKALISQKTKNWDIDRLAFTDKIIISMALAEMKNFPSIPV 343 Query: 101 KVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 KV+INE I+++K++ S +FVNG+LD + + + + Sbjct: 344 KVSINEYIDISKTYSTPKSKQFVNGLLDVMSKELTESGQ 382 >UniRef50_C2CFC5 Possible transcription antitermination protein NusB n=2 Tax=Anaerococcus RepID=C2CFC5_9FIRM Length = 133 Score = 97.3 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 59/136 (43%), Gaps = 8/136 (5%) Query: 4 AARRRARECAVQALYSWQLSQ-NDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 R RE + +Y +S+ D+ + + + D + + ++ + Sbjct: 1 MNRVEQREWVFKLIYQDMISKIEDVDKILAE------LNLADEDFIKASISSYLDKLTLI 54 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + + L + + +V +++L +++ E+ D+P V+INEA+ LAK + E+ +K Sbjct: 55 EEKVDSNLDSKHKRIAKVLRSILYLSINEIYFM-DIPVSVSINEAVNLAKKYSDEEDYKL 113 Query: 123 VNGVLDKAAPVIRPNK 138 VN +L K Sbjct: 114 VNSILGSIVRKDGNEK 129 >UniRef50_Q7MW39 NusB family protein n=2 Tax=Porphyromonas gingivalis RepID=Q7MW39_PORGI Length = 364 Score = 97.0 bits (241), Expect = 2e-19, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 56/130 (43%), Gaps = 6/130 (4%) Query: 11 ECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL 70 E ++ + + + A + + D ++ LL N +++ L Sbjct: 237 EFVLKTIRRIEQDTDPSAILLPAYKE-----KDDAVFGTTLLRNAIINGQEYRHIIRENL 291 Query: 71 SRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 ++ + ++ ++++A+ EL ++P V INE I+L+K F S FVNG+LD Sbjct: 292 INWEVDRIADMDMLIMQLAIAELLHFPNIPVLVTINEYIDLSKLFSTPKSGTFVNGLLDA 351 Query: 130 AAPVIRPNKK 139 +R K Sbjct: 352 VVKSLREKGK 361 >UniRef50_C2M6F3 NusB family protein n=1 Tax=Capnocytophaga gingivalis ATCC 33624 RepID=C2M6F3_CAPGI Length = 310 Score = 97.0 bits (241), Expect = 2e-19, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 1/110 (0%) Query: 31 EYQFLAEQDVKDVDVLYFRELLAGVATNTAYL-DGLMKPYLSRLLEELGQVEKAVLRIAL 89 FL D + ELL N L++ + + +++ ++++ + Sbjct: 192 VADFLPPLFKDKSDKDFAIELLRKAVLNDEAFHKYLVEKTPKWDADRIAELDAIMIKMGI 251 Query: 90 YELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 E K +P KV +NE +E+AK + S FVNG+LD + + K Sbjct: 252 AEFLKFPSIPVKVTLNEYVEIAKEYSTPKSSVFVNGILDTLSKDFQQEGK 301 >UniRef50_A5CEP9 N utilization substance protein B n=2 Tax=Orientia tsutsugamushi RepID=A5CEP9_ORITB Length = 162 Score = 96.6 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 72/156 (46%), Gaps = 19/156 (12%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIAD------VEYQFLAEQDVKDVDVL-------- 46 +K + R ++Q +YS+Q+ ++ + + + ++D+++ Sbjct: 6 IKINTKTITRIASIQGVYSYQILDSEPTIDSIIDFIITYYKDKSSLEDLELDSAIPCFKL 65 Query: 47 ---YFRELLAGVATNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYK 101 Y +L+ N +D ++ YL + +++L + ++LR+A EL + PYK Sbjct: 66 RTNYLTKLVNETIDNLETIDMIISSYLADNWQIKDLHLILLSILRVATCELKFFTSTPYK 125 Query: 102 VAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPN 137 V INE +A F E FVN +L+K + +R N Sbjct: 126 VVINEFTNIASDFVKESEIGFVNSLLEKISFNVRTN 161 >UniRef50_Q0BWV2 Putative ribosomal RNA small subunit methyltransferase B n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0BWV2_HYPNA Length = 423 Score = 96.6 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 53/123 (43%), Gaps = 2/123 (1%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 R A + L + + D A ++ D + R + + + ++D + P Sbjct: 6 IRLAAGRLLNLVLDKKRTLDDALATDDAYNNLDGSDRAFARAIASSALRHLGWIDRGVSP 65 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS-HKFVNGVL 127 +LSR L G +A++R ++ DVP+ A++E +E A+ + S F+N L Sbjct: 66 FLSRPLSATGAEIRALIRAGAAQIWFM-DVPHHAAVSETVEAARLWSPARSGGGFLNAAL 124 Query: 128 DKA 130 + Sbjct: 125 RRV 127 >UniRef50_Q2S463 Ribosomal RNA small subunit methyltransferase B n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S463_SALRD Length = 427 Score = 96.6 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 1/106 (0%) Query: 28 ADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRI 87 D L +D REL+AGV +LD ++ + + + +LR+ Sbjct: 4 DDAFVDKLTIEDADARTRRQARELVAGVTRQRRWLDFVLGEAYHGDYDSMEHRLQEILRL 63 Query: 88 ALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPV 133 LYEL P A++E +ELAK + VNGVL Sbjct: 64 GLYELLF-QSTPTHAAVDEYVELAKQALRPGAGNLVNGVLRTIDRD 108 >UniRef50_B2UNF0 NusB antitermination factor n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UNF0_AKKM8 Length = 294 Score = 96.2 bits (239), Expect = 3e-19, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 1/114 (0%) Query: 24 QNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSR-LLEELGQVEK 82 + + + + L + LD + L E + +++ Sbjct: 180 DRPSLAEIKKVVEAGRDAEELYREAKTLGEDILRRRDGLDAAIDSTLENYSPERVSAIDR 239 Query: 83 AVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRP 136 A+LR+ YEL R D+P + I+EAI L++ F + +S +F+NGVL + RP Sbjct: 240 AILRLGAYELLHRKDLPAPIVISEAIRLSERFSSAESPRFINGVLAGISKTGRP 293 >UniRef50_B6FZ39 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6FZ39_9CLOT Length = 173 Score = 96.2 bits (239), Expect = 3e-19, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 1/112 (0%) Query: 23 SQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVE 81 + +D+ + +++ Y + +D + Y + + +V+ Sbjct: 60 NDSDVHESMETEEEIDLENYLNLDYVSNVCKIYEEKHEEIDEAIDKYAKGWSIMTMPKVD 119 Query: 82 KAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPV 133 A+LR+A+ E+ +P KV+INEAIE+AK + + S KF+NGVL Sbjct: 120 VAILRLAIAEIGFIDSIPEKVSINEAIEMAKMYCDDKSPKFINGVLGSYLND 171 >UniRef50_C7NCF2 NusB antitermination factor n=4 Tax=Fusobacteriaceae RepID=C7NCF2_LEPBD Length = 138 Score = 95.8 bits (238), Expect = 4e-19, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 71/136 (52%), Gaps = 3/136 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVD-VLYFRELLAGVATNTAYL 62 RR RE + L+ +L N+I + E+++K D + + R + + N L Sbjct: 1 MTRREIREEIFKLLFEHELIDNNIEKRINDVINEENLKKNDEIDFLRSYVTEIIENENIL 60 Query: 63 DGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 +K L E LG +EK +L+I+ YE++ ++ Y++AINE +E+AK + D+ + Sbjct: 61 IEKIKNILDGWTYERLGTIEKVLLKISFYEIT-IKNIGYEIAINEVLEIAKKYSYNDTKE 119 Query: 122 FVNGVLDKAAPVIRPN 137 F+NG+L K I+ Sbjct: 120 FLNGILAKLVKDIKEE 135 >UniRef50_C7MCJ5 Transcription antitermination factor NusB n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MCJ5_BRAFD Length = 178 Score = 95.8 bits (238), Expect = 4e-19, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 57/132 (43%), Gaps = 2/132 (1%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 + R R R A+ L+ + D+ DV + L + + R L+ A + Sbjct: 40 RLHGRSRERIRAIDVLFEADAKRIDVLDVLQERLRRTAAQTPLPQWSRTLVELYAPHAVD 99 Query: 62 LDGLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYK-VAINEAIELAKSFGAEDS 119 +D + + L + V++A+LR+ E+ + + I E ++A+ +DS Sbjct: 100 IDEDLATHSRDWPLHRMPAVDRAILRLGAAEVLYGEEESRRGTIIGEYTKIAEVLSTDDS 159 Query: 120 HKFVNGVLDKAA 131 +FVNG+L + Sbjct: 160 PRFVNGLLQRLV 171 >UniRef50_C5CGV6 NusB/RsmB/TIM44 n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CGV6_KOSOT Length = 336 Score = 95.4 bits (237), Expect = 5e-19, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 6/123 (4%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R+ A++ L QN +A + + ++ L+ +D ++ + Sbjct: 5 RQKALETL--AFFDQNGYIPFRKVEIAISTLSSIGRRFYMNLVMETLRKRIQIDYILNQF 62 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 L + E+L LR+ + +L VP AI+ ++EL K+ + K VN VL K Sbjct: 63 LKKP-EKLPAPVMNALRLGVTQLFYMDSVPEFAAIHSSVELLKAKSFK---KLVNAVLRK 118 Query: 130 AAP 132 + Sbjct: 119 ISK 121 >UniRef50_C0XST3 Transcription antitermination protein NusB n=1 Tax=Corynebacterium lipophiloflavum DSM 44291 RepID=C0XST3_9CORY Length = 188 Score = 95.0 bits (236), Expect = 6e-19, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 55/131 (41%), Gaps = 6/131 (4%) Query: 14 VQALYSWQLSQNDIADVEYQFLAEQDVKD----VDVLYFRELLAGVATNTAYLDGLMKPY 69 V L+ + D V + Y RE++ GVA +D ++ + Sbjct: 18 VDILFEAETRDIDPVAVVEDRIELAQDPQNAVAPIAEYTREIITGVAEKLDDIDDAVEQF 77 Query: 70 L--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 L L L V++ +LR+A +E+ DV +AI+ A+ +A+ + + +++ VL Sbjct: 78 LSQDWELGRLPAVDRQILRVAAWEILFNDDVAAPIAISNALGMAEEYAGHAAPPYIHAVL 137 Query: 128 DKAAPVIRPNK 138 D + + Sbjct: 138 DDVVKTLPVPE 148 >UniRef50_A8YVX2 Transcription termination n=9 Tax=Lactobacillus RepID=A8YVX2_LACH4 Length = 130 Score = 95.0 bits (236), Expect = 7e-19, Method: Composition-based stats. Identities = 36/128 (28%), Positives = 63/128 (49%), Gaps = 4/128 (3%) Query: 7 RRARECAVQALY-SWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 +R+ A+QA+Y + Q DVE + +A ++K + Y ++L+ GV N L Sbjct: 4 HESRKVAMQAVYLANQEPDLSAEDVEAKVVATLNLKQLS-AYSKKLIEGVLENREDLQSE 62 Query: 66 MKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 + +L LE + Q+ A++ +AL+E+ + K A+NEA+ L F F+ Sbjct: 63 LTNHLKKSWRLERVSQIVVAIMEVALFEIKNSDKIDPKAAVNEALNLCDEFAEPKEKPFI 122 Query: 124 NGVLDKAA 131 NG+L Sbjct: 123 NGMLANFV 130 >UniRef50_C6WZZ6 Transcription termination protein NusB n=2 Tax=Flavobacteriaceae RepID=C6WZZ6_FLAB3 Length = 301 Score = 95.0 bits (236), Expect = 7e-19, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 1/98 (1%) Query: 41 KDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVP 99 + D + R LL + + + L +E + V+K +L A+ EL P Sbjct: 204 DEDDREFARRLLKDTLNHWEESEKKLVGRLENWDIERVSLVDKIILVTAITELDYFPLTP 263 Query: 100 YKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPN 137 +V INE IE++K F + S+ F+NG+LDK N Sbjct: 264 ARVVINEYIEISKVFSTDRSNIFINGILDKYTKDFNRN 301 >UniRef50_Q8RII1 N utilization substance protein B homolog n=7 Tax=Fusobacterium RepID=NUSB_FUSNN Length = 153 Score = 94.6 bits (235), Expect = 7e-19, Method: Composition-based stats. Identities = 35/142 (24%), Positives = 66/142 (46%), Gaps = 10/142 (7%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQD--------VKDVDVLYFRELLAG 54 R ARE + ++ + +++ +++ F + + + + + + G Sbjct: 13 KGGVRLAREEVFKLVFGVEATESASEELKQAFDIYLQNSEELIGTLNENQLEFLKSSIDG 72 Query: 55 VATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKS 113 +A N + ++K E +G VE+A+L +A YE + P +V NE IELAK Sbjct: 73 IAKNYDNIKDIIKKNTQNWAYERIGVVERALLIVATYEFIF-KNAPIEVIANEIIELAKE 131 Query: 114 FGAEDSHKFVNGVLDKAAPVIR 135 +G E S++FVNG+L + Sbjct: 132 YGNEKSYEFVNGILANIEKSKK 153 >UniRef50_B6GC41 Putative uncharacterized protein n=2 Tax=Collinsella RepID=B6GC41_9ACTN Length = 495 Score = 94.6 bits (235), Expect = 8e-19, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 3/122 (2%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR + AL Q S + D+ + D + L GV LD + Sbjct: 29 ARRATLDALMQAQESGRYVRDIFAHGDQLGRLSSRDAAFALRLALGVTATEGCLDDALNS 88 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 +L++ ++ + LRI+ YE D P V +++ +EL +S A+ + N VL Sbjct: 89 HLAKP-GKVSARVRCCLRISAYEALYL-DTPADVVVSQGVELVRS-CAKSASGLANAVLR 145 Query: 129 KA 130 + Sbjct: 146 RV 147 >UniRef50_B0MX54 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MX54_9BACT Length = 312 Score = 94.3 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 1/100 (1%) Query: 41 KDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVP 99 D D + + L N ++ + +E + ++ ++ A+ EL +P Sbjct: 204 SDEDAEFVKTLFEKTLINYNERLEYIEKFTRNWDVERIVFMDNLIMATAITELVSFPSIP 263 Query: 100 YKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 KV ++E I++AK + S F+NGVLDK + K Sbjct: 264 VKVTLDEYIDIAKFYSTPGSSTFINGVLDKIVEALTEEGK 303 >UniRef50_C8NU84 N utilization substance protein B family protein (Protein NusB) n=1 Tax=Corynebacterium genitalium ATCC 33030 RepID=C8NU84_9CORY Length = 217 Score = 94.3 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 58/130 (44%), Gaps = 6/130 (4%) Query: 14 VQALYSWQLSQNDIADVEYQFLAEQDVKDVDVL----YFRELLAGVATNTAYLDGLMKPY 69 V L+ + D + A V Y RE++AG A +D ++ + Sbjct: 18 VDILFEAETRDVDPVAIVEDRAALAGDPTNAVAPVADYTREIIAGAAAALDEIDNAIERF 77 Query: 70 L--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 L + L + V++A+LR+A +E+ +V ++I A+E++ + +++ +++ VL Sbjct: 78 LSDNWELNRIPAVDRAILRVATWEILYNDEVEPPISIANAMEMSTEYAGDNASPYIHAVL 137 Query: 128 DKAAPVIRPN 137 D N Sbjct: 138 DDIIQAHASN 147 >UniRef50_Q2GKH0 N utilization substance protein B n=5 Tax=Anaplasma RepID=Q2GKH0_ANAPZ Length = 282 Score = 94.3 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 60/141 (42%), Gaps = 10/141 (7%) Query: 6 RRRARECAVQALYSWQL---SQNDIADVEYQFLAEQ---DVKDVDVLYFRELLAGVATNT 59 + AR AVQ Y+ + +D+ D+ Q D+ VD ++L + Sbjct: 19 KTSARFLAVQGAYAMMFGAYTASDLEDLLEHLCEMQEVLDLHRVDKKLLSKILGCMIEKC 78 Query: 60 AYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 +D L+ +L +E + V AV+R + EL V INE + +A + + Sbjct: 79 NEVDSLISVHLNEKWSMERINLVSLAVMRAGVCELL-CLKTSECVIINEYVGIASTVLEK 137 Query: 118 DSHKFVNGVLDKAAPVIRPNK 138 FVN +L+K A +R + Sbjct: 138 SEVNFVNAILNK-AKTVRSPE 157 >UniRef50_UPI000185C78C antitermination protein NusB n=1 Tax=Capnocytophaga sputigena ATCC 33612 RepID=UPI000185C78C Length = 302 Score = 94.3 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 1/119 (0%) Query: 21 QLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQ 79 + E F + + +LL A N A L ++ L+ E + Sbjct: 174 EFKNLRPNPPEKYFTPSLYNNSEEKEFLVDLLKKTALNDAKLKSFVEDKLTNWDKERVAV 233 Query: 80 VEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 ++ +L++A+ E +P KV INE +ELAK + S F+NGVL+ + + Sbjct: 234 LDLIILKMAICEFLHFPSIPVKVTINEYLELAKEYSTAKSSLFINGVLNVVHKELSEKE 292 >UniRef50_D1Y3T9 Transcription antitermination factor NusB n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y3T9_9BACT Length = 174 Score = 94.3 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 1/81 (1%) Query: 55 VATNTAYLDGLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKS 113 V +D L++ Y E + V++ ++R+ALYE VP VA++EA+ LAK Sbjct: 91 VRRALPEIDALIETYSTEWKTERMSLVDRTIIRLALYEAVIAKKVPPGVALSEAVRLAKE 150 Query: 114 FGAEDSHKFVNGVLDKAAPVI 134 +G++DS +FVNGVL + + Sbjct: 151 YGSDDSSRFVNGVLARIVKAL 171 >UniRef50_A3VQU7 TRNA and rRNA cytosine-C5-methylase-like protein n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VQU7_9PROT Length = 455 Score = 93.9 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 3/126 (2%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR A+ L + + + A +D++ D + R L+ V LD Sbjct: 30 ARRAALDILLAI-RRGQALDMAMAESEAFEDLEGADRGFARTLIMAVLRRQNTLDEAYGT 88 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA-EDSHKFVNGVL 127 +L R L+ +LR+A ++ VP A ++LAK K +N + Sbjct: 89 FLDRPLKSTQGTVITLLRLAAAQIL-LLGVPPHAATATTVDLAKERRDSAGFAKLLNALC 147 Query: 128 DKAAPV 133 + Sbjct: 148 RRMVEK 153 >UniRef50_Q6MAQ2 Putative transcription termination factor, nusB n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MAQ2_PARUW Length = 154 Score = 93.9 bits (233), Expect = 2e-18, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 1/106 (0%) Query: 34 FLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY-LSRLLEELGQVEKAVLRIALYEL 92 + E + +V +E + + A +D + LS + V K +LR+ ++EL Sbjct: 5 IMNELSISKKNVRLAQEKVQKIVVQLAEIDSKISSVSLSYHFNRIQTVTKNILRLGVFEL 64 Query: 93 SKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 +D+P KV I EAI L++ F +S FVN +LD+ + + Sbjct: 65 FFETDIPQKVVIAEAIRLSRKFSTPESASFVNALLDQLYQKSKGEE 110 >UniRef50_B4WQD6 Transcription antitermination factor NusB, putative n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WQD6_9SYNE Length = 281 Score = 93.5 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 2/89 (2%) Query: 42 DVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPY 100 D Y ELL + +D + + + + L +V++ +LR+A+ E+ DVP Sbjct: 189 DDIRGYACELLGNWISYQKAIDAQLNEAMEKWSIRRLARVDRDILRLAMIEIVYM-DVPK 247 Query: 101 KVAINEAIELAKSFGAEDSHKFVNGVLDK 129 KVAI+EAIE+AK + ED ++F+NGVL + Sbjct: 248 KVAIDEAIEMAKRYSDEDGYRFINGVLRR 276 >UniRef50_B7CB38 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CB38_9FIRM Length = 397 Score = 93.5 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 39/122 (31%), Gaps = 6/122 (4%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 R+ +AL L +V + D + G N Y Sbjct: 1 MRKWIWKALDEVVNKDVYSNLYLRNHL--HEVDEKDRALATRIFYGTIQNYRYCKACWSK 58 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 Y+ +L +L ++ Y+L VP +N+A+ +AK N VL Sbjct: 59 YVKN---KLNPKMDVLLTMSTYQLLFLDKVPSYAIVNDAVNIAKKI-NMKYAGLTNAVLH 114 Query: 129 KA 130 K Sbjct: 115 KV 116 >UniRef50_Q26ET0 Putative antitermination protein NusB n=1 Tax=Flavobacteria bacterium BBFL7 RepID=Q26ET0_9BACT Length = 312 Score = 93.5 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 1/105 (0%) Query: 35 LAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLL-EELGQVEKAVLRIALYELS 93 L E + DV + +L N ++ + + Q++ ++ +A E Sbjct: 198 LPELIKDEDDVKFTMDLFRKTLFNREEFLERIEGKTPNWEQDRIAQIDLVLIMMAQCEFL 257 Query: 94 KRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 K + +P KV++NE +E++K + S F+NG+LD + Sbjct: 258 KFNSIPVKVSLNEYLEISKDYSTPKSSFFINGILDNLSKEYEKEG 302 >UniRef50_UPI0001C31BDA sun protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31BDA Length = 444 Score = 93.1 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 48/125 (38%), Gaps = 1/125 (0%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR+ A L + + D + L G LD +++ Sbjct: 11 ARQVAAAVLRRVESDGAYADRALAGEARRAGLDARDHAFAMALAFGAVQRRRTLDHVIER 70 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 R + +L + LR+ L +L V A+++++ELAK+ G +K VN VL Sbjct: 71 LARRPVGQLDPPVRDALRLGLLQLLFLGGVAPHAAVDQSVELAKAAGGPG-YKLVNAVLR 129 Query: 129 KAAPV 133 + A Sbjct: 130 RGARE 134 >UniRef50_C6XT54 NusB/RsmB/TIM44 n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6XT54_PEDHD Length = 316 Score = 93.1 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 1/94 (1%) Query: 43 VDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYK 101 D + +L + GL+ E + ++ ++++A+ EL +P K Sbjct: 208 EDSKFVEDLFVHTLKSDKEYQGLIAERTKNWESERIALMDTILMKMAICELMNFPSIPVK 267 Query: 102 VAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIR 135 V INE ++L+K + S+ F+NG+LDK ++ Sbjct: 268 VTINEYLDLSKDYSTPKSNSFINGILDKILGDLK 301 >UniRef50_B2VAC4 NusB antitermination factor n=2 Tax=Sulfurihydrogenibium RepID=B2VAC4_SULSY Length = 168 Score = 93.1 bits (231), Expect = 3e-18, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 68/141 (48%), Gaps = 11/141 (7%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR+ +++ L+++ + D+ +V +FL + Y +++ N+ +D ++K Sbjct: 19 ARDLSMRILFAYDFRKEDLFNVLEEFLNTKKFSPEIKEYVLKVVNFYNENSQEIDDIIKS 78 Query: 69 YLSRL-LEELGQVEKAVLRIALYELS---------KRSDVPYKVAINEAIELAKSFGAED 118 +L E +G +E+AVLR+ + EL + D ++ + ++L + + Sbjct: 79 HLKNWRFERIGYIERAVLRLGVSELLIIHSKEESKELKDKEIRILFLDLLDLVECYTNSK 138 Query: 119 -SHKFVNGVLDKAAPVIRPNK 138 S KFVNG+L K + N+ Sbjct: 139 LSVKFVNGILGKINKELEQNE 159 >UniRef50_Q2BQD6 Fmu, rRNA SAM-dependent methyltransferase n=1 Tax=Neptuniibacter caesariensis RepID=Q2BQD6_9GAMM Length = 432 Score = 93.1 bits (231), Expect = 3e-18, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 50/127 (39%), Gaps = 3/127 (2%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLM 66 + R A QAL ++ + E+ D D REL G L+ ++ Sbjct: 3 KNIRTLAAQALTPLLQNKGSLNTKYPAI--ERRCADKDRGLLRELCYGTLRYYPQLNRVL 60 Query: 67 KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGV 126 + +R + +A+ + LY++ + +P AI+E +E K + K +N + Sbjct: 61 QLLQNRPFKYKDIDVRALALVGLYQIQH-TRIPAHAAIHETVEACKELNKPGAAKLLNAI 119 Query: 127 LDKAAPV 133 L + Sbjct: 120 LRRFQRE 126 >UniRef50_B9GFY0 Predicted protein n=6 Tax=Spermatophyta RepID=B9GFY0_POPTR Length = 527 Score = 93.1 bits (231), Expect = 3e-18, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 3/99 (3%) Query: 35 LAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYEL 92 +D+ D D+ +++ G YLD L+ + + + +LRI YE+ Sbjct: 103 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDYLIGSLCHDEKAFRSMEPLLLQILRIGFYEI 162 Query: 93 SKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAA 131 K D+P ++E + LAK + VNG+L K Sbjct: 163 VKL-DMPSYAVVDENVRLAKVSLRPGAGNMVNGILRKLV 200 >UniRef50_A1AVP0 Sun protein n=1 Tax=Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica) RepID=A1AVP0_RUTMC Length = 421 Score = 92.7 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 48/126 (38%), Gaps = 8/126 (6%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R A++A+YS +++ ++ KD D + L+ G L+ ++ Sbjct: 7 RFIALEAIYSVIINKKSLSAF-------NYPKDNDTPLIKSLVFGTIRFYHQLNDIVSKR 59 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 L ++ ++ + Y+L S + +I E + + + + VN +L K Sbjct: 60 LKHSFKKEDLDVHCLMLLGAYQLLY-SKIAIHASIFETVNVVNALNKPWAKALVNAILRK 118 Query: 130 AAPVIR 135 + Sbjct: 119 IDRDKK 124 >UniRef50_A6LN58 NusB/RsmB/TIM44 n=2 Tax=Thermosipho RepID=A6LN58_THEM4 Length = 416 Score = 92.7 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 49/121 (40%), Gaps = 11/121 (9%) Query: 12 CAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLS 71 A + L S + F ++ +F+ L+ GV YLD ++ L Sbjct: 7 IAYRLLRKKFRSGIFSTEFYQAFSYVEE-----KAFFKNLIFGVLRKQEYLDWVINSLLK 61 Query: 72 RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAA 131 + +++ + +LRI Y+L + P +NE +EL + + VN +L K + Sbjct: 62 K--KDIPPSIRTILRIGTYQLLFTNK-PSYSIVNETVELVEKKSFK---GLVNAILRKIS 115 Query: 132 P 132 Sbjct: 116 K 116 >UniRef50_Q5GT93 Transcription termination factor, NusB n=7 Tax=Wolbachia RepID=Q5GT93_WOLTR Length = 160 Score = 92.3 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 14/147 (9%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDV----------KDVDVLYFRELLAG 54 R AR AVQ YS D + E + ++ ++ D + +LL Sbjct: 13 KRSAARFLAVQVAYSNIFMGYDKSTFELENCGLRNYVGKLADIFECEEFDYQFLEKLLYK 72 Query: 55 VATNTAYLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAK 112 V + D +++ YL L L V ++LR+A+ EL+ D P V INE +A Sbjct: 73 VIRSGGEYDKIIEYYLHPSWSLLRLNLVSLSILRVAVCELANC-DTPAPVVINEYTNIAS 131 Query: 113 SFGAEDSH-KFVNGVLDKAAPVIRPNK 138 + S F+NG+LDKA ++ NK Sbjct: 132 DLLDKPSEIGFINGLLDKAKSAVKLNK 158 >UniRef50_C8W755 NusB/RsmB/TIM44 n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8W755_ATOPD Length = 463 Score = 92.3 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 3/124 (2%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR+ A QA + + + + D + ++ D + L G LD +K Sbjct: 7 ARKVAYQAFFECRRNNLCVRDYLRESKDFSELSAQDKAFATRLALGATLTKGKLDEALKN 66 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 +L + L + RIA++E+ + AI++ +EL KS + S N VL Sbjct: 67 HLKSGIH-LEPKVQDAFRIAVFEVLYL-ETRRDAAISQGVELVKSVS-KRSSGLANAVLR 123 Query: 129 KAAP 132 K + Sbjct: 124 KISE 127 >UniRef50_A6VR79 Sun protein n=2 Tax=Marinomonas RepID=A6VR79_MARMS Length = 462 Score = 92.3 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 K ++ AR+ A++ + + L Q ++ + + DV +EL GV Sbjct: 16 KSTGQQSARQVAIKVITNILLQQGSLSTQLARH--QLDVASEHAPMLKELCFGVCRQYPR 73 Query: 62 LDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 L+ + L+ EE AVL + LY+L+ + P A+NE +E + + + K Sbjct: 74 LNSIALHLLAHPFEEKDTDLYAVLLLGLYQLTYM-NTPDHAAVNETVEACRILNKDWATK 132 Query: 122 FVNGVLDKAAPV 133 +N VL + Sbjct: 133 LMNAVLRRYQRE 144 >UniRef50_A4BK87 Putative uncharacterized protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BK87_9GAMM Length = 427 Score = 92.3 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 46/124 (37%), Gaps = 3/124 (2%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R A + L + D + L + + ++L+ G LD L+ Sbjct: 5 RLIAAEILLQVVDEGRSLNDELPRRLKH--IDPDQQAFLQQLVYGSTRYYFALDELINLL 62 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 + + + ++ +L I LY+L DV AINE +E + + + VN L + Sbjct: 63 VEKPIRGKERLVHMLLAIGLYQLWHL-DVAEHAAINETVEATLTAKKQWAKNLVNASLRR 121 Query: 130 AAPV 133 Sbjct: 122 FQRE 125 >UniRef50_Q3KKK7 N utilization substance protein B homolog n=9 Tax=Chlamydia RepID=NUSB_CHLTA Length = 168 Score = 92.3 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 4/133 (3%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 +P +++ RE +QALY+ ++ + + E V + Y + N Sbjct: 17 RPFPKQKLRELVLQALYALEIDPEGEDSLVSLLMTEASVSKKNAAYALMFCRAIRANQPD 76 Query: 62 LDGLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSD---VPYKVAINEAIELAKSFGAE 117 LD L+ + L L +E+ +LR+ L+E + D VP + I E L K F Sbjct: 77 LDALLDATIRTTTLARLTIIERNILRMMLFEHQQNQDCCPVPVAILIAETTRLIKKFSYS 136 Query: 118 DSHKFVNGVLDKA 130 + + VL Sbjct: 137 EGSSLILAVLGSI 149 >UniRef50_Q2NQQ2 Ribosomal RNA small subunit methyltransferase B n=264 Tax=Bacteria RepID=RSMB_SODGM Length = 433 Score = 92.3 bits (229), Expect = 5e-18, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 52/133 (39%), Gaps = 5/133 (3%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK R A +A+ + + + + + D +EL G+ Sbjct: 1 MKTH--YNLRVIAARAVAQVLDQGQSLGALLPPL--QAPLSEKDRALLQELCFGIMRVLP 56 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 L+ L++ +++ L + +L + LY+L+ + +P A+ E +E A + Sbjct: 57 QLEWLLRQLMAKPLTGKQRPVHYLLMVGLYQLTY-TRIPPHAALAETVEGAVAMKRPQFK 115 Query: 121 KFVNGVLDKAAPV 133 +NGVL + Sbjct: 116 GLINGVLRQFQRQ 128 >UniRef50_D2MQ58 Transcription antitermination factor NusB n=1 Tax=Bulleidia extructa W1219 RepID=D2MQ58_9FIRM Length = 124 Score = 92.3 bits (229), Expect = 5e-18, Method: Composition-based stats. Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 5/128 (3%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +R RE AV +LY++ DI + + + D YF ++ + Sbjct: 1 MSRSVQREKAVLSLYAYLSLPRDIHSIMED--SFGSLDKAD-PYFIRVVENAQEHIQEYT 57 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + L + LG +EKA+L I E +V + I+EA+ELAK++G DS++ Sbjct: 58 NYINQVLENWTFDRLGTIEKAILLIGCAEF-SLKEVAAVIIIDEAVELAKTYGEADSYRL 116 Query: 123 VNGVLDKA 130 +N VLD Sbjct: 117 INNVLDVI 124 >UniRef50_Q11SB2 Antitermination factor n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11SB2_CYTH3 Length = 389 Score = 91.9 bits (228), Expect = 5e-18, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 1/98 (1%) Query: 42 DVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPY 100 + D + EL + L+ + +E L ++ +L++AL E+ K ++P Sbjct: 279 EDDQEFMLELYKESTAFDDAAEKLITDKVQNWDIERLAFTDRIILKMALTEMVKFPNIPV 338 Query: 101 KVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 KV INE IEL+KS+ S +FVNG+LD + ++ + Sbjct: 339 KVTINEYIELSKSYSTPKSKQFVNGLLDTISIDLQKSG 376 >UniRef50_UPI0001C31981 NusB antitermination factor n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31981 Length = 133 Score = 91.9 bits (228), Expect = 5e-18, Method: Composition-based stats. Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 16/128 (12%) Query: 16 ALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-L 74 ALY L+ + EQ + + R L A D L+ + L Sbjct: 3 ALYQHDLTGRPL---------EQTLPKDAANFTRALAQAALARQAEFDALISRHAEGWTL 53 Query: 75 EELGQVEKAVLRIALYELSKRSD------VPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 + + +E+++LR++L E+ D +P + AI+EAIE AK++ D+ FVNGVL Sbjct: 54 QRIAPLERSILRVSLLEMLHPGDVPAERPIPPEGAIDEAIETAKAYCGADAPGFVNGVLA 113 Query: 129 KAAPVIRP 136 RP Sbjct: 114 AILRAERP 121 >UniRef50_C2HH21 Possible rRNA SAM-dependent methyltransferase RmsB n=2 Tax=Finegoldia magna RepID=C2HH21_PEPMA Length = 423 Score = 91.9 bits (228), Expect = 6e-18, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 46/114 (40%), Gaps = 4/114 (3%) Query: 25 NDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAV 84 +++ + D+ D+ Y + + N ++D ++ L +L ++ + Sbjct: 19 GYSSELLKTY-DYGDLDKRDIAYIKRCVFTEIENRFFIDYVISKCSDLELNKLDKIVLEI 77 Query: 85 LRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 LR+A E+ ++EA+ELA + +VN VL + + + Sbjct: 78 LRMATTEILFM-KTADYAVVDEAVELANNLTHYKD--YVNAVLREVCRINLDEE 128 >UniRef50_C1DXN6 Transcription antitermination factor NusB n=1 Tax=Sulfurihydrogenibium azorense Az-Fu1 RepID=C1DXN6_SULAA Length = 159 Score = 91.2 bits (226), Expect = 9e-18, Method: Composition-based stats. Identities = 34/145 (23%), Positives = 74/145 (51%), Gaps = 11/145 (7%) Query: 1 MKPAAR---RRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVAT 57 MK + + R+ARE ++ Y++ + D+ ++ +++ + Y +E+++ Sbjct: 1 MKQSIKNIQRQARELLLKVFYTFDQKGEPLEDILKEYTNLKEISPEVINYAKEIISFFNE 60 Query: 58 NTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDV------PYKVAINEAIEL 110 +D ++K +L + E LG +EKA+L+IA+ + K + K I + ++L Sbjct: 61 KKDKVDEMIKSHLEKWRFERLGYIEKALLKIAITDFLKLKEKGREENFMIKRIILDTLDL 120 Query: 111 AKSF-GAEDSHKFVNGVLDKAAPVI 134 + + G++ S KFVNG+L + + Sbjct: 121 VECYTGSKKSVKFVNGILGRVVREL 145 >UniRef50_A7IBA4 Sun protein n=6 Tax=Rhizobiales RepID=A7IBA4_XANP2 Length = 471 Score = 91.2 bits (226), Expect = 9e-18, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 43/129 (33%), Gaps = 5/129 (3%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR AV L + D A+ + D +LA L L+ Sbjct: 47 ARILAVDGLEQVLRHGAALEDALD---ADVALDPRDRALAYRILATSLRRIGTLRALIAK 103 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKS-FGAEDSHKFVNGVL 127 + R L + ++VL ++ DVP A+ +++A++ VN VL Sbjct: 104 LMERGLPKSAPRLESVLLAGATQILFM-DVPNHAAVGLCVDVARADRNTAGFAGLVNAVL 162 Query: 128 DKAAPVIRP 136 + Sbjct: 163 RRLTREADA 171 >UniRef50_C5X355 Putative uncharacterized protein Sb02g027560 n=1 Tax=Sorghum bicolor RepID=C5X355_SORBI Length = 574 Score = 91.2 bits (226), Expect = 9e-18, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 52/140 (37%), Gaps = 19/140 (13%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQD----------------VKDVDVLYFRELLA 53 R AV L + + + + + + + D D+ ++A Sbjct: 109 RAVAVVRLLRIEKGKAFVDLLNEKANDSGEKEIGYVERTLGFSTRYLDDRDIRLVTVIVA 168 Query: 54 GVATNTAYLDGLM-KPYLSRLLEE-LGQVEKAVLRIALYELSKRSDVPYKVAINEAIELA 111 G YLD L+ + + + +LRI +E+ K DVP A++E ++LA Sbjct: 169 GTVRWKRYLDYLIMSLCSEEKVFREMEPLLLQILRIGFFEILKL-DVPAYAAVDENVKLA 227 Query: 112 KSFGAEDSHKFVNGVLDKAA 131 K + VN +L K Sbjct: 228 KVALRPGAGNMVNAILRKLV 247 >UniRef50_B8DMM9 NusB/RsmB/TIM44 n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DMM9_DESVM Length = 530 Score = 90.8 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 1/100 (1%) Query: 33 QFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYEL 92 L + D EL+ G + + L++ +L+ E+L Q L +A +E+ Sbjct: 82 SALRHAGISRQDAALATELVYGYLRSEIRISWLLRRFLTAP-EKLPQEALLTLGVAAHEI 140 Query: 93 SKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAP 132 +P A++ A+ + K N VL A Sbjct: 141 VHLDRIPDYAAVDWAVTHIRQRFGPGLGKLANAVLRNVAR 180 >UniRef50_C7RA09 Sun protein n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RA09_KANKD Length = 443 Score = 90.8 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 50/126 (39%), Gaps = 4/126 (3%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 + R+ A AL++ DV EQ D FR L+ G L+ + K Sbjct: 14 QLRQQACLALHAIAFEGRSANDVLNSIQFEQG---SDNSLFRALVLGSCRYFIRLESIAK 70 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 L + + Q ++ I LY+L S VP AI+E + + + + K VNGVL Sbjct: 71 QLLQKPFKPKDQDLLCLIIIGLYQLEY-SRVPDHAAISETVSVCEQLKKPWATKLVNGVL 129 Query: 128 DKAAPV 133 Sbjct: 130 RNFVRQ 135 >UniRef50_B5JST2 Ribosomal RNA small subunit methyltransferase B n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JST2_9GAMM Length = 431 Score = 90.8 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 48/125 (38%), Gaps = 4/125 (3%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR+ A++A+ S Q ++ LA + D +EL G + L + Sbjct: 3 ARQQALRAITSVQQ-GQSLSAALPDLLA--PLPKRDRGLCQELSYGSLRYYHRYEWLSQQ 59 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 L + + +AVL + LY+L +P A++ + L + +N VL Sbjct: 60 LLKKPFKHKDSDLQAVLALGLYQL-FEMRIPDHAAVSNTVALVNGLKKSWAKGVINAVLR 118 Query: 129 KAAPV 133 A Sbjct: 119 NALRQ 123 >UniRef50_B8KLT3 Ribosomal RNA small subunit methyltransferase B n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KLT3_9GAMM Length = 433 Score = 90.4 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 47/133 (35%), Gaps = 6/133 (4%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MKP A R CA + + L + + L + D RE+ G Sbjct: 1 MKPGA--AVRACAARIIAEV-LRGDSLDRALESHLT--ILPGRDQPLCREICFGTLRQYP 55 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD L+ L + L + A+ LY+L+ +P A++ ++ A Sbjct: 56 RLDALLGQLLQKPLRAKDRDVHALALAGLYQLTSM-RIPAHAAVSATVDAATVLKKRQLS 114 Query: 121 KFVNGVLDKAAPV 133 +N VL + Sbjct: 115 GLLNAVLRRFQRE 127 >UniRef50_B8J1H7 NusB/RsmB/TIM44 n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8J1H7_DESDA Length = 526 Score = 89.6 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 48/149 (32%), Gaps = 24/149 (16%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAE----------------------QDVKDVDVLY 47 R A++AL L Q + D Sbjct: 17 RTAALRALLLVD-DGLSAQQALASVLDAPVAHGASGNSREKSHTANAGRCQGLSAQDRAL 75 Query: 48 FRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEA 107 EL+ G L+ L+ L R + L + + +L +A+Y L + VP + EA Sbjct: 76 CTELVYGCLRTELRLNFLLGRVLPRP-QGLPRPMQILLALAVYGLLFQDKVPSHAVVYEA 134 Query: 108 IELAKSFGAEDSHKFVNGVLDKAAPVIRP 136 +E A++ + + NG L + Sbjct: 135 VEQARALFGQGLARVANGALRSLQRMGEE 163 >UniRef50_Q8DKS0 N utilization substance protein B homolog n=1 Tax=Thermosynechococcus elongatus BP-1 RepID=NUSB_THEEB Length = 212 Score = 89.6 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 2/97 (2%) Query: 41 KDVDVLYFRELLAGVATNTAYLDGLMKPY-LSRLLEELGQVEKAVLRIALYELSKRSDVP 99 ++ Y LL + ++ L+ + LE L Q+++A++ IA+ E+ +V Sbjct: 110 QEEVQAYAIALLRCLQRYQNEIEELVNRSMVDWQLERLTQLDRAIIEIAVVEMRYL-EVA 168 Query: 100 YKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRP 136 +VAINEAIELAK + E SH+F+NGVL + + + P Sbjct: 169 KQVAINEAIELAKRYSDEGSHRFINGVLRRISEALDP 205 >UniRef50_UPI0000E0DBE4 Putative Sun protein n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E0DBE4 Length = 442 Score = 89.6 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 44/126 (34%), Gaps = 3/126 (2%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 + R A L+ Q L D + +E++ G L ++ Sbjct: 8 QLRADAAWVLFQILEKGVSSKQALAQRLEHYQ--GRDRAWLQEMVFGCLRTLPTLQFWLR 65 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 L + L+ ++ + ++ I LY+++ S V A++E + A +N +L Sbjct: 66 GLLDKPLKGRKKILEHLILIGLYQIAY-SRVSEHAAVSETVGAADLLKGTTLKALINAIL 124 Query: 128 DKAAPV 133 Sbjct: 125 RTFIRE 130 >UniRef50_C9LEM4 NusB family protein n=1 Tax=Prevotella tannerae ATCC 51259 RepID=C9LEM4_9BACT Length = 309 Score = 89.2 bits (221), Expect = 4e-17, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 2/108 (1%) Query: 32 YQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALY 90 + L E D +D D + EL + L++ L ++ +++IAL Sbjct: 199 QEILPEYDTED-DHQFALELFQTTIERGDEMRDLIRNNSKNWEFGRLAFMDVIIMQIALT 257 Query: 91 ELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 E+ +P V NE +++AK + S ++NG+LD ++ K Sbjct: 258 EMLTFPTIPLNVTFNEYLDIAKIYSTPRSSSYINGLLDHVVKYLQAEK 305 >UniRef50_C8NZ84 rRNA methylase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZ84_ERYRH Length = 404 Score = 88.9 bits (220), Expect = 5e-17, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 45/128 (35%), Gaps = 7/128 (5%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R + + L V + D+ D + + N+ +LD + Sbjct: 3 RIESYKVLSEVYFKGRHAHLVLKEL----DLPAQDQAFVSAFVYATLQNSLFLDYQYEDL 58 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 + + +L + + V+++ + K +P ++E ++L K+ G VN VL K Sbjct: 59 VDK---KLPKEVRLVIKMGCAQYFKMDKIPDYALVSETVDLCKAIGKHRYSGVVNAVLKK 115 Query: 130 AAPVIRPN 137 Sbjct: 116 VIERNERE 123 >UniRef50_C7N543 tRNA/rRNA cytosine-C5-methylase n=2 Tax=Slackia RepID=C7N543_SLAHD Length = 531 Score = 88.5 bits (219), Expect = 6e-17, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 50/125 (40%), Gaps = 4/125 (3%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAE-QDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 AR A + + +++V ++ +K DV + L GV + LD + Sbjct: 96 ARIAACLSCRIVRERDAFVSEVVPGVVSRMGPMKPEDVAFATRLARGVVATSGALDDFIN 155 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 L + + + LR++ YEL VA+++ +EL ++ + N VL Sbjct: 156 RNLYSPAD-IQPNVRDALRVSAYELLYLKK-DDYVAVDQGVELV-AYVEPKARALANAVL 212 Query: 128 DKAAP 132 K A Sbjct: 213 RKMAR 217 >UniRef50_C9RK88 Fmu (Sun) domain protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RK88_FIBSS Length = 419 Score = 88.5 bits (219), Expect = 6e-17, Method: Composition-based stats. Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 19/129 (14%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 RE A + L WQ F+ E + + EL GV YL+ +K Sbjct: 5 REEAFRVLLLWQRDG--------SFIKESGLSP----FAMELALGVCRRHLYLEYFVKSL 52 Query: 70 LSRLLEELGQVE-KAVLRIALYELSKRSDVPYKVAINEAIELAKSFG-AEDSHKFVNGVL 127 +L +E + +L + L+++ DVP AIN+++ELAKS E + + VN VL Sbjct: 53 TK----KLPSLEARVILEMGLFQMFFM-DVPDYAAINDSVELAKSANLGESTARLVNAVL 107 Query: 128 DKAAPVIRP 136 A P Sbjct: 108 RTARRQGEP 116 >UniRef50_A6G719 Putative uncharacterized protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G719_9DELT Length = 169 Score = 88.5 bits (219), Expect = 6e-17, Method: Composition-based stats. Identities = 36/144 (25%), Positives = 56/144 (38%), Gaps = 22/144 (15%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVD----------------- 44 KP +R R RE A+ + + F E+ +VD Sbjct: 7 KPTSRARGRELALWLMCHLERRGEGSRAALELFWTERPEFEVDDDFLGVAGPQMRDIIED 66 Query: 45 ---VLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPY 100 + R L + A +D + R +E + +V++ VLR+A EL P Sbjct: 67 SSARRWARRLTEAYLEDAAAVDQAIGAASERWRIERMDRVDRNVLRLAAVELR-TQKTPR 125 Query: 101 KVAINEAIELAKSFGAEDSHKFVN 124 V + EA+ LA +G+E S FVN Sbjct: 126 NVVVAEAVRLAARYGSERSAAFVN 149 >UniRef50_Q9LK54 Similarity to SUN and FMU proteins n=3 Tax=Embryophyta RepID=Q9LK54_ARATH Length = 531 Score = 88.1 bits (218), Expect = 7e-17, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 3/92 (3%) Query: 48 FRELLAGVATNTAYLDGLMKP--YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAIN 105 +++ G YLD L+ + R + + +LRI +YE+ KR D+P ++ Sbjct: 120 VTDVVGGTIRWRRYLDHLIGSLCHNERTFRNMEPLLLQILRIGVYEIIKR-DMPPYAVVD 178 Query: 106 EAIELAKSFGAEDSHKFVNGVLDKAAPVIRPN 137 E + LAK + FVNG+L K + + Sbjct: 179 ENVRLAKVALRPGAGDFVNGILRKLVSLKEKD 210 >UniRef50_Q21DD2 Fmu (Sun) n=13 Tax=Rhizobiales RepID=Q21DD2_RHOPB Length = 450 Score = 88.1 bits (218), Expect = 8e-17, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 45/132 (34%), Gaps = 5/132 (3%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDV---KDVDVLYFRELLAGVATNTAYLDGL 65 AR A L + D A + D D R L+A + L + Sbjct: 17 ARRIAADILDGVLHKHRTLDDQLEGAAAHPGLKTLSDRDRALMRRLVATILRRLGTLGHV 76 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELA-KSFGAEDSHKFVN 124 + L R L ++ L I ++ +VP A++ ++ L A VN Sbjct: 77 LSRMLDRGLPTDAPRAQSALLIGAAQILWM-EVPDHAAVDLSVRLVQSDRRAAKYAGLVN 135 Query: 125 GVLDKAAPVIRP 136 VL + A +P Sbjct: 136 AVLRRCAREGQP 147 >UniRef50_Q9Z6S0 N utilization substance protein B homolog n=5 Tax=Chlamydophila RepID=NUSB_CHLPN Length = 160 Score = 87.3 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 58/138 (42%), Gaps = 1/138 (0%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 K +++ RE +Q LY+ ++ + + +++ V VL + + Sbjct: 18 KEFPQQKMREIILQMLYALDMAPSAEDSLVPLLMSQTAVSQKHVLVALNQTKSILEKSQE 77 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD ++ L + L VEK VLR+ L+E + + I EAI L K F ++ Sbjct: 78 LDLIIGNALKNKSFDSLDLVEKNVLRLTLFEHFYSPPINKAILIAEAIRLVKKFSYSEAC 137 Query: 121 KFVNGVLDKAAPVIRPNK 138 F+ +L+ N+ Sbjct: 138 PFIQAILNDIFTDSSLNE 155 >UniRef50_B2UP28 Sun protein n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UP28_AKKM8 Length = 412 Score = 87.3 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 26/143 (18%), Positives = 51/143 (35%), Gaps = 13/143 (9%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK R+ A+ L SW ++ + + + + D + L+ V N Sbjct: 1 MKNNPPSP-RQTALNCLRSWHAGRSFAETLVDRECSRTALPSADRHLVQALVFSVLRNQT 59 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +LD ++ L + +L++ L +L + A+ E + LA + Sbjct: 60 WLDHVIGTLRKG---RLDVEARLILQLGLSQL-FLLGMADHAAVYETVNLA----SVRLR 111 Query: 121 KFVNGVLDKAAPV----IRPNKK 139 VN +L A + +K Sbjct: 112 GLVNAILRNALRREKTILEEREK 134 >UniRef50_A1TWM9 Sun protein n=3 Tax=Marinobacter RepID=A1TWM9_MARAV Length = 433 Score = 87.3 bits (216), Expect = 2e-16, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 45/130 (34%), Gaps = 4/130 (3%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R A L + + ++ L + + + G L+G + Sbjct: 9 RAIAANVLLAVEQ-GQSLSQCLPPAL--NQLPPEQRPQLQAICYGTCRWFHRLEGELNQR 65 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 L + L + ++ ++ +AL++L +NE +E ++ VNGVL Sbjct: 66 LKKPLRKPDRIIHHLMLVALFQLRYSEQ-ATYAVLNETVEACRALDKPHLTGLVNGVLRA 124 Query: 130 AAPVIRPNKK 139 A P K Sbjct: 125 AEREGAPEPK 134 >UniRef50_D0WMZ9 B-like utilization substance protein n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WMZ9_9ACTO Length = 171 Score = 86.9 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 54/140 (38%), Gaps = 7/140 (5%) Query: 4 AARRRARECAVQALYSWQLSQ----NDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNT 59 AR + R A+ ++ D+ + + + + ++ A N Sbjct: 15 TARTKQRNRALDVVFEADERGLLGQGDLLALLGERRVVSTSQSPIRDFGASIVEAYAENA 74 Query: 60 AYLDGLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 +D +++ + + V++++LR A EL I E LA+ + E Sbjct: 75 DDIDTIVEAASEDWAMSRMNAVDRSILRAAAAELVYV-GTDRFHVIPEWASLAREYSTER 133 Query: 119 SHKFVNGVLDKAAPVIRPNK 138 S FV GVL++ A IR + Sbjct: 134 SVGFVMGVLNRVA-DIRARE 152 >UniRef50_B6JAF7 SUN protein n=6 Tax=Alphaproteobacteria RepID=B6JAF7_OLICO Length = 446 Score = 86.9 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 48/129 (37%), Gaps = 5/129 (3%) Query: 9 ARECAVQALYSWQLSQNDIADVEY---QFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 AR A + + + D Q A + + D D R L+A V L L Sbjct: 17 ARRIAADIIDGVLHKRRTLDDQLEGAAQHPALKSLSDRDRALMRRLVATVLRRRGTLAYL 76 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKS-FGAEDSHKFVN 124 + L R + ++ L I ++ DVP A++ ++ L ++ A VN Sbjct: 77 LSRLLDRGVPSDAPRAQSALMIGAAQILWM-DVPDHAAVDLSVRLVQADRRAAKYAGLVN 135 Query: 125 GVLDKAAPV 133 VL + A Sbjct: 136 AVLRRCARE 144 >UniRef50_D1AVZ4 NusB antitermination factor n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AVZ4_STRM9 Length = 133 Score = 86.6 bits (214), Expect = 3e-16, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 59/134 (44%), Gaps = 2/134 (1%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +R R + L+ ++ +DI + + L + + + L N + + Sbjct: 1 MTQREVRNEIFKILFEHEVVNSDIIARKDEVLETLKISNSKREFLENYLNNFMLNESEII 60 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 +K + L EK +L++A +E+ V +++ INEA+EL+K +G E + F Sbjct: 61 EKIKEKIKGWTFSRLATPEKVILKMAFFEILF-EKVGHEIVINEAVELSKVYGDEKTKTF 119 Query: 123 VNGVLDKAAPVIRP 136 +NG+L I Sbjct: 120 INGILADLIKDIDK 133 >UniRef50_Q651X9 Os09g0477900 protein n=3 Tax=Magnoliophyta RepID=Q651X9_ORYSJ Length = 570 Score = 85.8 bits (212), Expect = 4e-16, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 3/93 (3%) Query: 40 VKDVDVLYFRELLAGVATNTAYLDGLM-KPYLSRLLEE-LGQVEKAVLRIALYELSKRSD 97 + + D+ ++AG YLD L+ + + + +LRI +E+ K + Sbjct: 151 LDNRDIRLVTVIVAGTVRWKRYLDYLIMSLCSEEKVFREMEPLLLQILRIGFFEILKL-N 209 Query: 98 VPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 VP A++E + LAK + VN +L K Sbjct: 210 VPAYAAVDENVRLAKVALRPGAGNLVNAILRKL 242 >UniRef50_A3MAA2 16S rRNA m5C967 SAM-dependent methyltransferase n=18 Tax=Acinetobacter RepID=A3MAA2_ACIBT Length = 434 Score = 85.8 bits (212), Expect = 4e-16, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 53/136 (38%), Gaps = 6/136 (4%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 ++R R VQ L Q +A + L V + D F EL+ G L Sbjct: 8 SSRFNLRAQVVQTLLKVQQ-GQSLASILNTQL--NQVAERDRALFHELVLGTLRQWFALK 64 Query: 64 GLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 + P LS+ L + + L + LY++ + + AI+E ++ K G V Sbjct: 65 SISLPLLSKPLN--NETVETCLYVGLYQVL-CTRIAAHAAISETVDATKQLGFPALSGIV 121 Query: 124 NGVLDKAAPVIRPNKK 139 N +L +A ++ Sbjct: 122 NAILRRATRETEDFEQ 137 >UniRef50_Q7V9D9 Antitermination protein NusB n=18 Tax=cellular organisms RepID=Q7V9D9_PROMM Length = 222 Score = 85.4 bits (211), Expect = 5e-16, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 2/84 (2%) Query: 48 FRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINE 106 E + V +D + + L L ++++ +LR+A+ +L+ P+ VA NE Sbjct: 131 ALERVRLVIEQRNSIDASIDAVMEGWRLSRLPRIDRDILRLAVVDLTALQ-TPFAVACNE 189 Query: 107 AIELAKSFGAEDSHKFVNGVLDKA 130 A+ELA + + + +NGVL + Sbjct: 190 AVELAHRYSDDQGRRMINGVLRRL 213 >UniRef50_C8NZM3 N utilization substance protein B family protein (Protein NusB) n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZM3_ERYRH Length = 134 Score = 85.4 bits (211), Expect = 6e-16, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 11/135 (8%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLY-----FRELLAGVATN 58 +R R+ A+ A+Y L + + +V +V + +++ V Sbjct: 3 MSRYNERQNAMSAIYIHLLREQSMQEVLEDNRFVSEVGTFIQDFNLQDEMLQVVMNVEAR 62 Query: 59 TAYLDGLMKPYL-SRLLEELGQVEKAVLRIALYELS--KRSDVPYKVAINEAIELAKSFG 115 + YL + LG +E+A+L +A EL + V V +NEA+ LAK F Sbjct: 63 KDIYSRAIDHYLTKWRFDRLGFIEQAILLMACAELELGYQDKV---VIVNEAVNLAKDFS 119 Query: 116 AEDSHKFVNGVLDKA 130 E+S+K +NGV+D Sbjct: 120 DEESYKLINGVIDAL 134 >UniRef50_D1KD39 Ribosomal RNA small subunit methyltransferase B n=1 Tax=uncultured SUP05 cluster bacterium RepID=D1KD39_9GAMM Length = 423 Score = 85.4 bits (211), Expect = 6e-16, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 48/133 (36%), Gaps = 9/133 (6%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 M+ + R A+ A+ S L + ++ Y D D + L+ G Sbjct: 1 MQNTNKSNTRAVALDAICSVVLDKRSLSSFVY--------PDQDDALAKSLVFGTIRFYH 52 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 L+ ++ L+ LE+ ++ + Y++ S V +I E ++ + Sbjct: 53 QLNDIVTDLLNHSLEKEDLDIHCLMLLGAYQILY-SKVAIHASIFETVDTLNFLDKTWAK 111 Query: 121 KFVNGVLDKAAPV 133 VN +L + Sbjct: 112 GLVNAILRQIDRD 124 >UniRef50_Q2ST59 N utilization substance protein B (NusB), putative n=4 Tax=Mollicutes RepID=Q2ST59_MYCCT Length = 132 Score = 85.0 bits (210), Expect = 7e-16, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 5/128 (3%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAE-QDVKDVDVLYFRELLAGVATNTAYLDGL 65 + R+ +QA Y +QL I + L + Q+ + +L+ L+ ++ + Sbjct: 8 SKKRKLLIQAFYKYQLLNASIDYIYQDVLDDVQNFNNKQLLFEINLI--AEKQVDLINHI 65 Query: 66 -MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + + + + V +A+L + YE+ +D P V INE + K + +KFVN Sbjct: 66 NINISSNWKWDRIPAVIRAILIVGTYEILY-TDTPKPVTINEMVNYVKEIEPDFDYKFVN 124 Query: 125 GVLDKAAP 132 VLDK Sbjct: 125 AVLDKIIK 132 >UniRef50_D0RNV5 N utilization substance protein B n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RNV5_9RICK Length = 127 Score = 84.6 bits (209), Expect = 8e-16, Method: Composition-based stats. Identities = 32/138 (23%), Positives = 61/138 (44%), Gaps = 15/138 (10%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK R + VQ +Y + + + D KD + + +++ G Sbjct: 1 MKSGTRTK----LVQKIYEKTKNPDGVIDF---------GKDPYIRHIKKVFKGYFEQEE 47 Query: 61 YLDGLMKPYLSRLLEE--LGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 L+ ++ LS +++ L + +L+ ++YEL +P+KV IN+ +++ F D Sbjct: 48 QLNEILSRSLSAEIKQKNLDSLLNIILKTSIYELKFCEKIPFKVVINQYLDVTAQFYGND 107 Query: 119 SHKFVNGVLDKAAPVIRP 136 + VNGVLD A + Sbjct: 108 QKRLVNGVLDNVAKSLNS 125 >UniRef50_D2MQI4 Putative ribosomal RNA small subunit methyltransferase B n=1 Tax=Bulleidia extructa W1219 RepID=D2MQI4_9FIRM Length = 404 Score = 84.2 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 48/125 (38%), Gaps = 14/125 (11%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 + RE V+ L + Q E + + E++ G + L K Sbjct: 2 KEREAIVRILEHVLYDHAYASLSLKQLKIEGSI-----GFVTEVVYGTLRHYKLLQEQYK 56 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 P++ ++ +++ +L +ALY+ VP +N +EL KS FVN VL Sbjct: 57 PFVKKIKKKMD----VLLVMALYQHHFM-KVPDYAIVNSTVELVKS----QEKGFVNAVL 107 Query: 128 DKAAP 132 K Sbjct: 108 RKIFQ 112 >UniRef50_Q7V3R0 Antitermination protein NusB n=7 Tax=Prochlorococcus marinus RepID=Q7V3R0_PROMP Length = 209 Score = 84.2 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 2/79 (2%) Query: 55 VATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKS 113 + N +D + + R L+ L +V++ +LR+A ++ D P VA +EA+ LA Sbjct: 128 IINNLKSIDSEIDEVMDRWRLKRLPRVDRDILRLAYVDIHFL-DTPVAVACDEAVNLANK 186 Query: 114 FGAEDSHKFVNGVLDKAAP 132 + K +NGVL + Sbjct: 187 YCDTQGRKMINGVLRRLQR 205 >UniRef50_A8PKU4 Ribosomal RNA small subunit methyltransferase B n=1 Tax=Rickettsiella grylli RepID=A8PKU4_9COXI Length = 442 Score = 84.2 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 47/124 (37%), Gaps = 2/124 (1%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R A + + + + + + + + D + +EL GV L L Sbjct: 5 RRIAAHIISRFLKKKIALNTILFAEVP-SGIDVRDRAFIQELCYGVIRWYFPLKKLSSFL 63 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 L + L Q A++ + LY+L+ ++ A+ E ++ AK + +NGVL Sbjct: 64 LKKSLNRSDQDIYALVLVGLYQLNYL-NISPHAAVYETVQAAKELRKRWAAPLINGVLRS 122 Query: 130 AAPV 133 Sbjct: 123 FQRQ 126 >UniRef50_B9CK37 NusB/NOL1/NOP2/sun family protein n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CK37_9ACTN Length = 480 Score = 84.2 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 46/118 (38%), Gaps = 3/118 (2%) Query: 19 SWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELG 78 ++ + D + + D LL G + LD ++ YL + L Sbjct: 17 QYRRKHARMRDFLRTSHRMDVLGEKDRALATRLLLGSVSAVGELDRVLASYLPKR-RHLE 75 Query: 79 QVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRP 136 + LR+A +E+ P VA+++ +E+A+ + N +L + A + P Sbjct: 76 PKLRDALRLATFEILYL-HTPKHVAVSQGVEMARRAS-AQATGLANAILRRIATDVSP 131 >UniRef50_B3E3P1 Sun protein n=4 Tax=Desulfuromonadales RepID=B3E3P1_GEOLS Length = 464 Score = 84.2 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 50/124 (40%), Gaps = 1/124 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R+ A L S D+ Q L+ ++ D F EL+ GV LD +K Sbjct: 19 RQAAYTTLQRLSGSDLHADDLIDQELSRNQLQGPDRGLFAELVFGVLRRQGTLDHYLKQL 78 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 + + LE L +LR+ LY+L VP A++ +EL + +NGVL Sbjct: 79 VQQPLERLELPVLLLLRLGLYQLRYLDRVPSHAAVHATVELTNEIL-PRAKGLINGVLRS 137 Query: 130 AAPV 133 Sbjct: 138 YLRR 141 >UniRef50_Q0F395 Sun protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F395_9PROT Length = 404 Score = 83.9 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 51/137 (37%), Gaps = 12/137 (8%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 + R+ A+++L + Q ++ + EL+ GV L+ Sbjct: 2 QVRKAAIESLADILVRQRKAEQAMERY--GVRLDARGRGLLHELVYGVLRRFYSLEADYS 59 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 + ++ + L I Y+L VP A++E + A + FVN VL Sbjct: 60 RFCRSKPDDTA---RMALLIGTYQLRYM-RVPAHAALSETV-AAVMQSNPKAGGFVNAVL 114 Query: 128 DKAA-----PVIRPNKK 139 + + ++PN++ Sbjct: 115 RRVSEHEPPQKLKPNQR 131 >UniRef50_A5WI31 Fmu (Sun) domain protein n=3 Tax=Psychrobacter RepID=A5WI31_PSYWF Length = 528 Score = 83.5 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 6/124 (4%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R + L S Q ++ + L + D + LL + L+ Sbjct: 15 RVAVINTLLSIQQ-GQSLSGLLDPLL--NSLNGDDKGFAHALLLTTLRHWHATARLLDSL 71 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 ++E+ + +++ + +L +V AI+E +E K + VN VL K Sbjct: 72 ADNPIDEIE--VRTTIQLGITQLLYL-NVADHAAIHETVEAVKHIDYARASGLVNAVLRK 128 Query: 130 AAPV 133 A Sbjct: 129 VAKN 132 >UniRef50_A1WZH2 Sun protein n=1 Tax=Halorhodospira halophila SL1 RepID=A1WZH2_HALHL Length = 429 Score = 83.5 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 43/128 (33%), Gaps = 3/128 (2%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R AV L + + + V + + + L+ G L+ + Sbjct: 6 RVAAVHVLERVLERGETLDEALEAQFSR--VSERNRSLLQALVYGALRWLTRLEAQVATL 63 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 R + + +L I +E + P A++EA++ A+ + VN VL K Sbjct: 64 TPRDDWRADPLLRGLLVIGAWEAQGLA-TPAHAAVSEAVDAARRLRRARAAGMVNAVLRK 122 Query: 130 AAPVIRPN 137 P Sbjct: 123 LHKATPPG 130 >UniRef50_A4E6P2 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E6P2_9ACTN Length = 118 Score = 82.3 bits (203), Expect = 4e-15, Method: Composition-based stats. Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 76 ELGQVEKAVLRIALYELSKRSD--VPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAP 132 + ++ +LRIA+YE+ +D V + INEA+ELAK++G + S FVNGVL K A Sbjct: 2 RMPGADRNLLRIAVYEMRFLTDEEVSDAIVINEAVELAKAYGTDQSASFVNGVLGKIAR 60 >UniRef50_Q40J48 N utilization substance protein B, putative n=4 Tax=canis group RepID=Q40J48_EHRCH Length = 174 Score = 82.3 bits (203), Expect = 4e-15, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 57/142 (40%), Gaps = 9/142 (6%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADV------EYQFLAEQDVKDVDVLYFRELLAGVA 56 + + R A+Q YS + I D+ Y+ D+ +D +++ + Sbjct: 12 HSKKTTTRFLAIQGTYSMIFNNYTINDIDNLIDYLYEMKEVLDLIQIDNQLLLKIMNTML 71 Query: 57 TNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 ++ + +L ++ + + ++++ A+ EL SD + INE + +A Sbjct: 72 LTFNTINSTIATFLNEKWSIDRINLISLSIIKTAVCELI-CSDTDAVIIINEYVNIASHI 130 Query: 115 GAEDSHKFVNGVLDKAAPVIRP 136 F+N +L++ RP Sbjct: 131 LERTDVNFINAILNQVKFTARP 152 >UniRef50_B9YCQ6 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YCQ6_9FIRM Length = 115 Score = 82.3 bits (203), Expect = 5e-15, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 56/115 (48%), Gaps = 4/115 (3%) Query: 17 LYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LE 75 LY +L + ++ + + + + D + R L+ N + L E Sbjct: 4 LYQHRLLNKPMDEIIEEVMEMKTGELDD--FSRILILDTLDNENRYIQYINETLKDWSFE 61 Query: 76 ELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 LG +E+A+L +A EL ++ + I+EA+ LAK + +++++ +NGVLD+ Sbjct: 62 RLGVLEQAILLMACSELDHQT-ASAAIIIDEAVRLAKDYCDDEAYRLINGVLDRI 115 >UniRef50_Q88B41 Ribosomal RNA small subunit methyltransferase B n=23 Tax=Gammaproteobacteria RepID=RSMB_PSESM Length = 448 Score = 81.5 bits (201), Expect = 7e-15, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 40/114 (35%), Gaps = 3/114 (2%) Query: 23 SQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEK 82 + + L + ++ D ++L G A L L L + + + Sbjct: 17 GKASLNSSLPTQLDKVEL--RDRGLTQDLAFGTARWQPRLSALAAKLLQKPFKAADADVE 74 Query: 83 AVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRP 136 A+L + LY+L S +P AI E + A + +N VL A Sbjct: 75 ALLLVGLYQLFY-SRIPAHAAIGETVGCADKLKKPWAKGLLNAVLRNAQRDGEA 127 >UniRef50_Q5SK01 Sun protein (RNA methyltransferase) n=4 Tax=Thermus RepID=Q5SK01_THET8 Length = 398 Score = 81.5 bits (201), Expect = 7e-15, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 45/137 (32%), Gaps = 8/137 (5%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 M+ R AV L + + L + D Y L+ G Sbjct: 1 MRAGTP---RALAVAVLLEVDRGGR-AQLLLDRALRRSPWPERDRAYATFLVYGALRRLR 56 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD L+ P L R E L + +LR+ E P ++ +E AK Sbjct: 57 LLDHLLAPLLPRP-EGLPPEVRWILRLGALE--WLEGKPDHARVSPWVEEAKRRY-PGLA 112 Query: 121 KFVNGVLDKAAPVIRPN 137 VN VL + AP P Sbjct: 113 GLVNAVLRRLAPREAPE 129 >UniRef50_B9ZKR1 Sun protein n=2 Tax=Chromatiales RepID=B9ZKR1_9GAMM Length = 451 Score = 81.5 bits (201), Expect = 8e-15, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 47/132 (35%), Gaps = 3/132 (2%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLM 66 R R+ A++A L + + A + + D + + L L L+ Sbjct: 17 RSPRQRALEAAEGVVLQGHSLTRAVEH--ATEGLNARDAAWVQALAYTTLRWYPQLSALV 74 Query: 67 KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGV 126 +L R L + V +L L EL A+ E ELA++ + +N V Sbjct: 75 NGFLERPLRKKDAVIGVLLAQGLAELMHF-STRDHAAVRETAELARAIHRPGAVGLINAV 133 Query: 127 LDKAAPVIRPNK 138 L +A + Sbjct: 134 LRRAQREQDALE 145 >UniRef50_A0Z2Z6 Sun protein n=2 Tax=unclassified Gammaproteobacteria (miscellaneous) RepID=A0Z2Z6_9GAMM Length = 438 Score = 81.5 bits (201), Expect = 8e-15, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 3/111 (2%) Query: 23 SQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEK 82 + + + L + + +EL+ G L+G+ L + Sbjct: 20 NGESLVRALPKGLE--PLSLENRPLVQELVYGTLREWPRLEGIALQLLRKPPRAKDADVL 77 Query: 83 AVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPV 133 ++ +++LS +VP A+ E +E AKS G + +NG L Sbjct: 78 CLILTGIHQLSGL-NVPSHAAVGETVEAAKSLGKSWAAGLINGCLRNYQRQ 127 >UniRef50_C0N5F9 Ribosomal RNA small subunit methyltransferase B n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N5F9_9GAMM Length = 406 Score = 81.2 bits (200), Expect = 1e-14, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 1/101 (0%) Query: 38 QDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSD 97 + D + ++++L GV L L L + + A+ LY+L Sbjct: 6 PQLNDNERSFYQQLCYGVLRLHPTLIFLGNQLLKKPFKNKDADIAALFLTGLYQLRDL-R 64 Query: 98 VPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 P AI+E + AK G + + +N L + Sbjct: 65 TPSHAAISETVNAAKKLGKQWATGLLNACLRNYQRQHTELE 105 >UniRef50_Q0AKI8 Fmu (Sun) domain protein n=1 Tax=Maricaulis maris MCS10 RepID=Q0AKI8_MARMM Length = 433 Score = 80.8 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 39/122 (31%), Gaps = 2/122 (1%) Query: 19 SWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELG 78 + + + + D D + R + A ++ LSR L E Sbjct: 17 AVMKQRRTLEAALEHTPEFAAMSDRDRAFARAITATTFRRLGQTRTVLNGLLSRPLHETS 76 Query: 79 QVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE-DSHKFVNGVLDKAAPVIRPN 137 + +A+L +L P ++ +ELA + +N VL + R Sbjct: 77 EGAQALLITGATQLLWMDGAP-HAVVSSTVELADARSDARKLKGLINAVLRRVDREGRER 135 Query: 138 KK 139 K Sbjct: 136 LK 137 >UniRef50_A0LDW0 Sun protein n=2 Tax=cellular organisms RepID=A0LDW0_MAGSM Length = 452 Score = 80.8 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 3/122 (2%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFL-AEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 R A A+ + + Q + + E++ G + A L+ + Sbjct: 9 RTMAAAAVSAMLSEHLPLETALEQQIHQQSGTSPEMRGRAHEIVVGTIRHMALLEATLTR 68 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF-GAEDSHKFVNGVL 127 ++ + L+ +AVL ALY+ P A++EA++L K + FVN VL Sbjct: 69 FMQKDLKAKHHYVRAVLLTALYQAQFM-RTPIHSAVDEAVKLVKQQPRDHNLSGFVNAVL 127 Query: 128 DK 129 + Sbjct: 128 RR 129 >UniRef50_Q0VTE3 tRNA and rRNA cytosine-C5-methylase, putative n=2 Tax=Alcanivorax RepID=Q0VTE3_ALCBS Length = 447 Score = 80.4 bits (198), Expect = 2e-14, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 2/123 (1%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R AV+AL + D + + L + ++ D R++ GV + L+ + Sbjct: 17 RLSAVRALNRVLPGKGD-GESLREVLRDFPLQGSDGGQMRDICFGVCRHLRPLNHWLNQQ 75 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 LS+ L+ Q + L LYEL + P +N +L + A + N VL K Sbjct: 76 LSKPLKGSAQPVRLALLAGLYELWFSNR-PAHAIVNAYPQLCRKLKAPWAAGLSNAVLRK 134 Query: 130 AAP 132 A+ Sbjct: 135 ASQ 137 >UniRef50_Q46I53 Antitermination protein NusB n=2 Tax=Prochlorococcus marinus RepID=Q46I53_PROMT Length = 208 Score = 80.0 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 2/92 (2%) Query: 41 KDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVP 99 + + V +D + + L+ L +++ +LR+A +L + P Sbjct: 109 QKEIRELALRRVDLVIEKQDEIDHKLDSVMEGWRLKRLPRIDSDILRLAWVDLIDF-NTP 167 Query: 100 YKVAINEAIELAKSFGAEDSHKFVNGVLDKAA 131 V NEA+ LA + E + +NGVL K Sbjct: 168 MAVTCNEAVNLANRYSDEQGRRMINGVLRKLQ 199 >UniRef50_A6FYF2 Ribosomal RNA small subunit methyltransferase B n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6FYF2_9DELT Length = 453 Score = 80.0 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 2/89 (2%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAE-QDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 R AV+ L + Q + + L D+ D L+ GV + LD + Sbjct: 14 RRLAVRTLREIEQRQGFSNRILSEQLERFPDLDPRDRGLITTLVYGVLRHRGRLDAHLDA 73 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSD 97 + +L + +LR+A YE+ + Sbjct: 74 AADKP-HKLKGELRTILRVAAYEVLELDR 101 >UniRef50_A9IZD6 SUN-family protein n=5 Tax=Bartonella RepID=A9IZD6_BART1 Length = 454 Score = 80.0 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 6/104 (5%) Query: 39 DVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDV 98 + D L R +L + + + +L R L + +L I++ ++ D+ Sbjct: 52 KLSQRDRLLCRAILTTSLRHRGQITAALSCFLERPLPSQALSLQHLLHISVAQILYL-DI 110 Query: 99 PYKVAINEAIELAKSFGAEDSHKF---VNGVLDKAAPVIRPNKK 139 P AI+ A+ +AK +F VN +L A P ++ Sbjct: 111 PDHAAIDLAVRVAK--FDPRMRRFSGVVNALLRNVAREAAPLRQ 152 >UniRef50_A6UED5 Fmu (Sun) domain protein n=14 Tax=Rhizobiales RepID=A6UED5_SINMW Length = 470 Score = 79.6 bits (196), Expect = 3e-14, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 52/135 (38%), Gaps = 9/135 (6%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQ---DVKDVDVLYFRELLAGVATNTAYLDG 64 ++R+ A + L + + + + ++ D D R +L + + Sbjct: 38 KSRQAAAKILAAVVDRKTPLDGMLDPERGNPVYRELNDADRALVRAILNSALRHLPRIRA 97 Query: 65 LMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF-- 122 + L L E + + VL +A ++ DVP A++ A+E A+ + +F Sbjct: 98 AIDSLLQTPLPEGARALEHVLTVAAAQILYL-DVPDHSAVDLAVEQAQ--SDPRNRRFAS 154 Query: 123 -VNGVLDKAAPVIRP 136 VN VL + + Sbjct: 155 LVNAVLRRLSREKEA 169 >UniRef50_B6YR78 Transcription termination factor NusB n=1 Tax=Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 RepID=B6YR78_AZOPC Length = 305 Score = 79.6 bits (196), Expect = 3e-14, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 60/127 (47%), Gaps = 4/127 (3%) Query: 12 CAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLS 71 ++ L +Q +++ V + ++ + R + N+ +D MK + Sbjct: 182 LVLKTLKQFQ-NRSIAEPVLLPLFKDNTTQEYAIQLLRSSIIEAEENSDLIDTQMK---N 237 Query: 72 RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAA 131 + + ++ ++++AL EL+ +P KV +NE I+LA+ + S F+NG+L Sbjct: 238 WDKKRIALLDLIIMQMALAELNNFPAIPLKVTLNEYIDLARYYSTPKSTSFINGILQAIV 297 Query: 132 PVIRPNK 138 +++ NK Sbjct: 298 SILKINK 304 >UniRef50_Q1IY91 rRNA methyltransferase, sun family protein n=3 Tax=Deinococcus RepID=Q1IY91_DEIGD Length = 427 Score = 79.6 bits (196), Expect = 3e-14, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 44/130 (33%), Gaps = 5/130 (3%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR AV+ L + A LAE + D L+ G L+ + P Sbjct: 11 ARALAVRVLTRVLAGETFAAPALDAALAEARLPARDAGLATHLVYGTLRFAPMLEAALAP 70 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 L E+ +A+L +E P A++E + +A+ VN VL Sbjct: 71 LLR---EKTHSKTRALLLAGAFEKLVL-GTPPHAALSEYVNVARMARLAP-PGLVNAVLR 125 Query: 129 KAAPVIRPNK 138 + + Sbjct: 126 RVERPAETEE 135 >UniRef50_B1AIT8 Transcription antitermination factor NusB n=15 Tax=Ureaplasma RepID=B1AIT8_UREP2 Length = 127 Score = 79.2 bits (195), Expect = 4e-14, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 56/123 (45%), Gaps = 7/123 (5%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R Q +Y W +++ + L + D+ D+ + + + N L ++KP Sbjct: 8 RVKLFQFIYHWLITKKNKPIALKCALVDFDL---DLNWI-NVGEYILDNYEQLTKMIKPL 63 Query: 70 L--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 + E L VE+A+L ++ Y P K+ I++ + ++ +S+KF+N +L Sbjct: 64 ISKDWTFERLSYVEQALL-LSAYGEYLVLKTPKKIIIDQTLITTHNYSNNESYKFINAIL 122 Query: 128 DKA 130 D+ Sbjct: 123 DQL 125 >UniRef50_Q0BRA0 16S rRNA m(5)C 967 methyltransferase n=12 Tax=Acetobacteraceae RepID=Q0BRA0_GRABC Length = 452 Score = 79.2 bits (195), Expect = 4e-14, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 7/122 (5%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R+ A + L + + + ++ D L A +D +++P+ Sbjct: 36 RDAACRLLNAVLEQHRSLEEALNAL---PPMEPRDRAAAHRLAAATLRRLGTIDAVLEPF 92 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 L R + +LR+ L D P A+ A++LA+ +N VL K Sbjct: 93 LRREP---PAPVRDILRLGAAGLLFL-DTPPHAAVGTAVDLARQLRLAPFTGLINAVLRK 148 Query: 130 AA 131 A Sbjct: 149 VA 150 >UniRef50_B9Y7F7 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y7F7_9FIRM Length = 412 Score = 78.8 bits (194), Expect = 5e-14, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 44/125 (35%), Gaps = 11/125 (8%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R+ A Q L + Q Q + + + + ++ GV + L + Sbjct: 5 RKRAWQGLNAILNEGQYANLWLRQH--GQTLSEEEKRWVTAVIYGVLRHREPLRWQWRDL 62 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK-FVNGVLD 128 + + E +L +++Y+L +N+A+EL S K VN VL Sbjct: 63 VRNVPE---PSVAVLLDMSVYQLFYLDKGAEYAIVNDAVELC-----PRSKKGLVNAVLR 114 Query: 129 KAAPV 133 + Sbjct: 115 QLLRR 119 >UniRef50_C9UP93 Fmu domain-containing protein n=1 Tax=Brucella abortus bv. 3 str. Tulya RepID=C9UP93_BRUAB Length = 252 Score = 78.5 bits (193), Expect = 7e-14, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 47/131 (35%), Gaps = 5/131 (3%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQD---VKDVDVLYFRELLAGVATNTAYLDGL 65 AR CA + L + + + ++ D R +L N ++ Sbjct: 31 ARLCAARLLGAVIEKNTSLDGLTDNAHGHPQYLALEPRDRALVRAILGSALRNRGSIERA 90 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAK-SFGAEDSHKFVN 124 + L R L E K +L +A+ ++ D+P A++ A+E A VN Sbjct: 91 INKRLDRPLPENAVALKHLLHVAVAQIFYL-DLPDHSAVDLAVEAANSDPRNRKYAGLVN 149 Query: 125 GVLDKAAPVIR 135 +L + A Sbjct: 150 ALLRRLARNKE 160 >UniRef50_C6QJ47 Sun protein n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QJ47_9RHIZ Length = 468 Score = 77.7 bits (191), Expect = 9e-14, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 4/126 (3%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR+ AV AL+S + + DV + A +++ D + R + V N L +++ Sbjct: 39 ARDVAVSALFSVLVEKRPFDDVFAKAAAARNLAPRDRAFARLIATTVLRNRGSLQAVLRT 98 Query: 69 YLSRLL-EELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKS-FGAEDSHKFVNGV 126 YL + L E LG++E+ +L A P AI+ A++ ++ + VN V Sbjct: 99 YLEKPLPEHLGRLEQILLAAAA--QLLLIKTPPHAAISLAVDQCRADRVGKRFGNLVNAV 156 Query: 127 LDKAAP 132 L + + Sbjct: 157 LRRLSE 162 >UniRef50_D1AKD9 Fmu (Sun) domain protein n=4 Tax=Fusobacteriaceae RepID=D1AKD9_SEBTE Length = 437 Score = 77.7 bits (191), Expect = 1e-13, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 41/118 (34%), Gaps = 4/118 (3%) Query: 16 ALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLE 75 L + + + + + ++ N ++D L++ S + + Sbjct: 11 LLDEIIAGGKYSNLQLNYYFSTKGYNKKEKSFITNIIHTTLKNLIFIDYLIEKNASNIKK 70 Query: 76 ELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPV 133 K +LRI++ + + Y + EA+E AK + FVN +L Sbjct: 71 R---KIKQLLRISVAQFLLNKESDYSGIVFEAVETAKII-NKHQTGFVNVILRNIFQK 124 >UniRef50_Q1N3W2 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent (Fragment) n=1 Tax=Bermanella marisrubri RepID=Q1N3W2_9GAMM Length = 184 Score = 77.3 bits (190), Expect = 2e-13, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 52/133 (39%), Gaps = 5/133 (3%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MKP R A L + + + +D+ D + + G + Sbjct: 1 MKPL--HNVRSIAAVILLGVIDEKKSLNTLLPYH--SRDLLPEDKAQLQSICFGACRHFF 56 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 ++ L K L + L E ++ +++L I LY+L+ S +P AI++ + + Sbjct: 57 SINALSKMLLDKPLPEKARLTQSLLWIGLYQLAH-SHMPEHAAIHQTVAACDNLKQTPFK 115 Query: 121 KFVNGVLDKAAPV 133 K +N +L + Sbjct: 116 KLINAILRRFQRE 128 >UniRef50_Q603G1 Sun protein n=1 Tax=Methylococcus capsulatus RepID=Q603G1_METCA Length = 431 Score = 76.9 bits (189), Expect = 2e-13, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 48/131 (36%), Gaps = 6/131 (4%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 ++R A AL+ + ++ + + L D + + L GV LD L+ Sbjct: 4 KSRTLAAAALHDVVVDRHSLTWALGKRLPSLP-DARDRAFVQSLCYGVLRAFETLDFLLG 62 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 ++ + + + I L++L +V A++E +E A + +N +L Sbjct: 63 RLATKPIR--DPEIRLLALIGLHQLRSM-NVKPHAAVSETVEAAGRKS--WAKPLLNAIL 117 Query: 128 DKAAPVIRPNK 138 + Sbjct: 118 RNYLRRKEELE 128 >UniRef50_Q2GCQ0 Putative N utilization substance protein B n=2 Tax=Neorickettsia RepID=Q2GCQ0_NEOSM Length = 141 Score = 76.9 bits (189), Expect = 2e-13, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 62/138 (44%), Gaps = 5/138 (3%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDV---KDVDVLYFRELLAGVATNT 59 P+ +R AR +++ YS S +++ + L Q++ K D+ +L N Sbjct: 2 PSEKRVARLLSIEVCYSSYFSDLPQSELISRALELQEMPYMKRYDLELLNSILDLCLANV 61 Query: 60 AYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 L+ +L + + ++ ++LR+A+ EL S + INE + L F + Sbjct: 62 EADTELIGRFLSEEWEINRIDNLKLSLLRVAISELRLSSVGQRNLVINEYVSLGGLFLSV 121 Query: 118 DSHKFVNGVLDKAAPVIR 135 FVN +L+K A I+ Sbjct: 122 KEVGFVNAILEKLASEIQ 139 >UniRef50_B3PGY5 Ribosomal RNA small subunit methyltransferase B n=2 Tax=Gammaproteobacteria RepID=B3PGY5_CELJU Length = 432 Score = 76.5 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 47/124 (37%), Gaps = 3/124 (2%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R A Q L Q ++ + + + D ++L GV L Sbjct: 5 RAAATQVLAQILRQQGSLSSLLPAM--SVKIAEQDRPLLQQLCFGVCRYYPQLQAYTSLL 62 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 L + L +A+L + LY+L + +P AI E +E+ + + K VNGVL + Sbjct: 63 LDKPLRAKDSDVQALLLLGLYQLIH-TRIPDHAAIGETVEVTRDIKKAWATKLVNGVLRQ 121 Query: 130 AAPV 133 Sbjct: 122 FQRD 125 >UniRef50_C8PZ41 Ribosomal RNA small subunit methyltransferase B n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PZ41_9GAMM Length = 450 Score = 76.5 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 41/124 (33%), Gaps = 6/124 (4%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R V L Q ++ + V + D + ELL G L + + Sbjct: 11 RAKVVATLERIQQGESLSS---LLDPLLNQVSEKDKGFAHELLLGTLRQWWALARIGESL 67 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 + + + A L I LY+L D P AI E +E K +N +L K Sbjct: 68 IEHEVT--DKGVWAALNIGLYQLLYM-DTPDYAAIGETVEAVKQLDKGYGAGLINAILRK 124 Query: 130 AAPV 133 Sbjct: 125 VQKN 128 >UniRef50_B9QVY4 Ribosomal RNA small subunit methyltransferase B n=2 Tax=Alphaproteobacteria RepID=B9QVY4_9RHOB Length = 468 Score = 75.8 bits (186), Expect = 4e-13, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 45/129 (34%), Gaps = 5/129 (3%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQD---VKDVDVLYFRELLAGVATNTAYLDGL 65 AR+ A L + + + + D R + + + + Sbjct: 37 ARKVAADILGNVVHKKRPLDGELDMASGHSGFRALAANDRALVRAIAGAALRHRGEITEI 96 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAK-SFGAEDSHKFVN 124 + L R + E +L +A+ ++ D+P + A++ A++ A A VN Sbjct: 97 LGRLLDRDIPEKTGRVLDILHVAIAQMQFL-DIPDRAAVSLAVDHASMDRRARPYKGLVN 155 Query: 125 GVLDKAAPV 133 GVL + Sbjct: 156 GVLRRLGRE 164 >UniRef50_Q0FEH7 Ribosomal RNA small subunit methyltransferase B, putative n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=Q0FEH7_9RHOB Length = 430 Score = 75.0 bits (184), Expect = 6e-13, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 53/127 (41%), Gaps = 6/127 (4%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQ-DVKDVDVLYFRELLAGVATNTAYLDGLMK 67 ARE AV+ L++ L + + D+ + D++ + + L N +D +++ Sbjct: 8 AREAAVRLLHAVLLERRLLIDIVNGEDSLLIDLEPSERARAQSLAMTTLRNLGPIDFVLQ 67 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF-GAEDSHKFVNGV 126 YL+ ++ +LR++ E+ + A++ A+ +AK N V Sbjct: 68 KYLT---KQTPFALLNILRVSAAEML-VDGIAAHAAVDSAVTMAKRRHKTAHLKDLANAV 123 Query: 127 LDKAAPV 133 L K A Sbjct: 124 LRKVASE 130 >UniRef50_Q14MH2 Hypothetical transcription factor involved in antitermination transcription regulator protein n=1 Tax=Spiroplasma citri RepID=Q14MH2_SPICI Length = 126 Score = 75.0 bits (184), Expect = 7e-13, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 54/129 (41%), Gaps = 5/129 (3%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 ++R+ R + LY + QND+ + + + V + + N + + Sbjct: 1 MSKRQERINIINLLYRHFVLQNDVLTTKQEAYDFSQMVTTSVE--TNQVEEILANLSDII 58 Query: 64 GLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 + +L L KAVL +YE+ + + INE++E+ K +G + Sbjct: 59 AKINQHLKPGWDFVRLSNYHKAVLVYGVYEICY-QHLAKAIVINESLEILKLYGEDVDFS 117 Query: 122 FVNGVLDKA 130 ++N VLD+ Sbjct: 118 YINSVLDQV 126 >UniRef50_D1RHX8 Ribosomal RNA small subunit methyltransferase B n=1 Tax=Legionella longbeachae D-4968 RepID=D1RHX8_LEGLO Length = 458 Score = 74.6 bits (183), Expect = 9e-13, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 40/127 (31%), Gaps = 10/127 (7%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R A+ L + + ++ + + +E+ G + L + Sbjct: 36 RLHALYILTHLLVEKTPLSQLMASSAEVSPM-------TKEICFGFCRHYFRLQAIANCL 88 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 + + +E+ L I +Y+L +P + E + L + + VN VL Sbjct: 89 IHKKPKEIELWV--ALLIGIYQLHYM-KLPDYAVVKETVALLEKIKKGWAKGLVNAVLRN 145 Query: 130 AAPVIRP 136 Sbjct: 146 FCRQHDE 152 >UniRef50_Q4FLU0 Antitermination protein NusB n=3 Tax=Candidatus Pelagibacter RepID=Q4FLU0_PELUB Length = 134 Score = 74.6 bits (183), Expect = 9e-13, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 54/128 (42%), Gaps = 11/128 (8%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R +Q LY + + + ++++ G + +K Y Sbjct: 12 RVIIIQKLYGNFFNDDTDLTFPKHRF---------KKFIKDVVLGTIERDEVIKEEVKKY 62 Query: 70 LSRLLE--ELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 LS LE L QV + +++ A++E + V K+ I E ++ + F + K++N +L Sbjct: 63 LSEDLELTNLDQVFQVIVKSAIFEFLYKPKVSSKIIIKEYLDASNFFLEDGQTKYLNAIL 122 Query: 128 DKAAPVIR 135 DK A IR Sbjct: 123 DKIAKKIR 130 >UniRef50_A9NFG4 Transcription antitermination factor n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NFG4_ACHLI Length = 126 Score = 74.2 bits (182), Expect = 1e-12, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 5/91 (5%) Query: 49 RELLAGVATNTAYLDGLMKPYLSR-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEA 107 +E++ G+ ++D L+ + ++ L V+ A++R+A+Y L K D P ++ INEA Sbjct: 37 KEVINGMIDELEHVDFLISSTIKNYTIDRLNLVDLAIIRVAVYALLKEID-PAEIVINEA 95 Query: 108 IELAKSFG---AEDSHKFVNGVLDKAAPVIR 135 IEL+K + E HKF N ++D I+ Sbjct: 96 IELSKEYTDLDDEKQHKFNNSLIDNIYKKIK 126 >UniRef50_C1SIP0 tRNA/rRNA cytosine-C5-methylase n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SIP0_9BACT Length = 379 Score = 74.2 bits (182), Expect = 1e-12, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 38/104 (36%), Gaps = 9/104 (8%) Query: 34 FLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELG-QVEKAVLRIALYEL 92 + + +R++ + + ++ L +L E+ +A L + ++ Sbjct: 21 LREDYFEDSAEQRLYRKIYFETFRHLGF----IEKCLDKLYTEMPGPELRAALALGTCQI 76 Query: 93 SKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRP 136 D+P A+NE++ L + + FVN VL Sbjct: 77 LFMDDIPDYAAVNESVILVQM----NKRSFVNAVLRNVGRRKEE 116 >UniRef50_Q87AR1 Ribosomal RNA small subunit methyltransferase B n=20 Tax=Gammaproteobacteria RepID=RSMB_XYLFT Length = 431 Score = 74.2 bits (182), Expect = 1e-12, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 39/124 (31%), Gaps = 2/124 (1%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R A + L + L + D + V + + + Sbjct: 8 RVVAARVLALVVDQGRSLKTELAAALPTLE-DVRDRALVEAICFAVLRRRPVYEAALTRW 66 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 L+R L + +L + +L VP A++ ++ + G FVN VL + Sbjct: 67 LARPLGRGDAQLRGLLMVGFAQL-DVLKVPPYAALSATVDACRVLGWPHRVSFVNAVLRR 125 Query: 130 AAPV 133 A Sbjct: 126 AQRE 129 >UniRef50_Q88RR3 Ribosomal RNA small subunit methyltransferase B n=10 Tax=Gammaproteobacteria RepID=RSMB_PSEPK Length = 436 Score = 73.8 bits (181), Expect = 2e-12, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 41/117 (35%), Gaps = 3/117 (2%) Query: 20 WQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQ 79 + + L V + D ++L G A LD L L + + Sbjct: 14 VLSGKASLNSSLPAQLD--KVDERDRGLTQDLAFGTARWQPRLDLLAAQLLQKPFKAADA 71 Query: 80 VEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRP 136 +A+L + LY+L + +P AI E + A + +N VL +A Sbjct: 72 DVQALLLVGLYQLFY-TRIPAHAAIGETVGCADKLKKPWAKGLLNAVLRRAQREGEE 127 >UniRef50_A3UKE9 RRNA methyltransferase RsmB n=1 Tax=Oceanicaulis alexandrii HTCC2633 RepID=A3UKE9_9RHOB Length = 450 Score = 73.5 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 40/127 (31%), Gaps = 2/127 (1%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R A+ A+ + + ++ D + R + + V LD + Sbjct: 27 RAVALGAVEGVLAKAVPLDGALAGRPEWKRMEPRDRAFARAIASAVIRRPIALDAALMQV 86 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIEL-AKSFGAEDSHKFVNGVLD 128 L + L + +LR E D P A++ + L A+ N VL Sbjct: 87 LDKPLPDEEVRAHLILRCGAAERLIL-DTPAHAAVDAWVSLMAQDRHTARFKNLANAVLR 145 Query: 129 KAAPVIR 135 + + Sbjct: 146 RVVDQGK 152 >UniRef50_Q0G330 Putative uncharacterized protein n=5 Tax=Rhizobiales RepID=Q0G330_9RHIZ Length = 473 Score = 73.5 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 49/137 (35%), Gaps = 9/137 (6%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQ---DVKDVDVLYFRELLAGVATNTAYLDG 64 +AR+ A + L + Q + + ++ D + +L L Sbjct: 44 KARQVAAKLLGAVIEQQTSLDGLTDPDHGHPHFRQLEARDQGLVKAILLTALRFRGTLTQ 103 Query: 65 LMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF-- 122 + L R L +L +A ++ DVP A++ A+ A++ + +F Sbjct: 104 EIAARLDRPLPSNATALNHLLHVAAAQIRFL-DVPDSAAVDLAVTAAEA--DPRTRRFKG 160 Query: 123 -VNGVLDKAAPVIRPNK 138 VN VL + + + Sbjct: 161 VVNAVLRRMTRELGGAE 177 >UniRef50_C7RGU2 Fmu (Sun) domain protein n=4 Tax=Anaerococcus RepID=C7RGU2_ANAPD Length = 430 Score = 73.1 bits (179), Expect = 3e-12, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 46/129 (35%), Gaps = 6/129 (4%) Query: 11 ECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL 70 E + +L + ++ Y +++ GV N Y+D ++ Sbjct: 5 ELILNSLVRIICEDKKSNEEINYLEKRVG----NLPYATKVIYGVLENKIYIDYMIGKLS 60 Query: 71 SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 L+++ + +L I +Y + + +++ +EL K S FVN +L Sbjct: 61 KIKLKKIHKNVLTILEIGIYNIHFL-ETKDYATVDKLVELTKR-KNRRSSGFVNAILRNF 118 Query: 131 APVIRPNKK 139 + K Sbjct: 119 IRDEKEIAK 127 >UniRef50_Q601I2 Putative uncharacterized protein n=5 Tax=Mycoplasma hyopneumoniae RepID=Q601I2_MYCH2 Length = 253 Score = 72.3 bits (177), Expect = 4e-12, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 12/132 (9%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 RR R + +Y WQL +I + + +D +LL + N ++L Sbjct: 119 TKRRLGRMGVISIIYIWQLFDKNID--IKEIKTKYFELTIDQ---LKLLNFIKKNYSFLR 173 Query: 64 GLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG--AEDS 119 ++ L E + + +++L + EL VP ++ NEA+E+ K F ++ Sbjct: 174 KVINLQLKSNWNWERILPLIRSILLVGAAELFF---VPSRIVFNEAVEITKIFSIAGDNE 230 Query: 120 HKFVNGVLDKAA 131 FVN VL K Sbjct: 231 FCFVNAVLQKIY 242 >UniRef50_B8BTD6 Predicted protein n=1 Tax=Thalassiosira pseudonana RepID=B8BTD6_THAPS Length = 1014 Score = 72.3 bits (177), Expect = 4e-12, Method: Composition-based stats. Identities = 32/150 (21%), Positives = 58/150 (38%), Gaps = 22/150 (14%) Query: 9 ARECAVQAL--YSWQLSQNDIADV------EYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 AR A+ AL + S + Q +++ D + R L+A V Sbjct: 513 ARSIAINALATSAASNSGAHVNAAAFATQQLEQDEHYNEMEARDRAFARLLVATVERRLG 572 Query: 61 YLDGLMKPYLSRLLEELGQ---VEKAVLRIALYELSKRSDVPYKVAINEAIE-------L 110 +DG++ + + + G+ + +A LR + +L D P A E ++ L Sbjct: 573 QIDGVLGSCIEKYPPKKGKHSHLIQATLRTGVAQLLFL-DTPPFAANKETVQVLRMHHHL 631 Query: 111 AKSFGAE---DSHKFVNGVLDKAAPVIRPN 137 +K+ KFVNGV K + + + Sbjct: 632 SKTSTYPVPEPMVKFVNGVFRKLSEPLAAD 661 >UniRef50_Q5ZSC6 rRNA methyltransferase (SUN protein) n=5 Tax=Gammaproteobacteria RepID=Q5ZSC6_LEGPH Length = 427 Score = 71.5 bits (175), Expect = 8e-12, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 46/124 (37%), Gaps = 11/124 (8%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R A++ L + S+ +++ ++ Q++ + +E+ G + L + Sbjct: 6 RFNALKILTALIESRKNLS----YLMSPQEISPM----TKEICYGFCRHYFRLQSIADTL 57 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 +++ + VL I +Y+L + P + E + L + VN VL Sbjct: 58 INKRPK--DNELWIVLLIGIYQLQYMNK-PDYAVVKETVSLLGQVKKSWAKGLVNAVLRN 114 Query: 130 AAPV 133 Sbjct: 115 FCRR 118 >UniRef50_O27960 Fmu and fmv protein n=1 Tax=Archaeoglobus fulgidus RepID=O27960_ARCFU Length = 437 Score = 71.5 bits (175), Expect = 8e-12, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 50/130 (38%), Gaps = 8/130 (6%) Query: 11 ECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL 70 E A + L + S+ + + D K ++ + +D +K L Sbjct: 15 EIAAKVLAEVERSRISVKSAVQKLAGGFDYKVRGSVHAYSV--ETLKRLNAIDYFLKSTL 72 Query: 71 SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 + + L + +LRIA+YE+ V +A + A+ +A+ G VN VL K Sbjct: 73 KK-FDGLDPFTRNLLRIAVYEMKY-KGVHPALATDSAVRIARERGK---ASLVNAVLRKV 127 Query: 131 AP-VIRPNKK 139 I+ + Sbjct: 128 EKLDIQAEGR 137 >UniRef50_Q8EWP3 Transcription termination factor N-utilization substance protein B n=1 Tax=Mycoplasma penetrans RepID=Q8EWP3_MYCPE Length = 149 Score = 71.1 bits (174), Expect = 1e-11, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 60/124 (48%), Gaps = 7/124 (5%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAE-QDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 R + +YS + D +F E ++KD D+ +++A N + +KP Sbjct: 27 RVACFRFIYSTLIMNLGDKDCILKFNEELAELKDKDIA---KVIAFYIKNKQNIKSRIKP 83 Query: 69 YLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGV 126 L ++ L +V+ +++ A E D+ K+ I++AI +K + +S+KF+N + Sbjct: 84 LLKEEWEIDRLNKVDLSIIMEAFCEF-HTLDIDRKIIIDQAIVTSKRYSENNSYKFINFI 142 Query: 127 LDKA 130 LDK Sbjct: 143 LDKL 146 >UniRef50_B9JUI9 Sun protein n=44 Tax=Rhizobiales RepID=B9JUI9_AGRVS Length = 493 Score = 71.1 bits (174), Expect = 1e-11, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 47/132 (35%), Gaps = 9/132 (6%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFL---AEQDVKDVDVLYFRELLAGVATNTAYLDG 64 AR A + L + + + + A + + D R +L ++ Sbjct: 53 EARMAASRLLAAVIDRKTSLDGMMDGDHGNPAYAALSEADRGLVRAILNTSLRFLPRIEA 112 Query: 65 LMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF-- 122 ++ L L + + L +A ++ DVP A++ A+E A S +F Sbjct: 113 MLARLLDAPLPDGARALYHSLIVAAAQMVYL-DVPDHSAVDLAVEQANR--DPRSRRFAK 169 Query: 123 -VNGVLDKAAPV 133 VN VL + Sbjct: 170 LVNAVLRRLGRE 181 >UniRef50_A5IYQ6 Transcription termination factor (NusB) n=2 Tax=Mycoplasma RepID=A5IYQ6_MYCAP Length = 139 Score = 71.1 bits (174), Expect = 1e-11, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 65/142 (45%), Gaps = 14/142 (9%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK +RR R + LY ++L + D D+D F++L ++ N Sbjct: 1 MK--SRREYRLGVINVLYKYEL----LEAKLLPSQIFSDESDIDNEQFKQL-ELISLNYD 53 Query: 61 YLDGLMKPYLSR--LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 Y + +L++ +L + +A+L A +EL + K+ INEA+E+ KSF ++ Sbjct: 54 YYQKTILKFLNQNTAWTKLPALIRAILLNATHELL---SISPKIVINEAVEITKSFYEQE 110 Query: 119 S--HKFVNGVLDKAAPVIRPNK 138 + +K VN +L N+ Sbjct: 111 ANFYKLVNALLQNIYKYFVINE 132 >UniRef50_A1KRE7 SUN-family protein n=32 Tax=Neisseriaceae RepID=A1KRE7_NEIMF Length = 419 Score = 71.1 bits (174), Expect = 1e-11, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 43/111 (38%), Gaps = 4/111 (3%) Query: 24 QNDIADVEYQFL-AEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEK 82 ++ DV Q A D+ + +++ G L ++ L + ++ + Sbjct: 20 GRNLQDVLAQIRTAHPDLTAQENGALQDIAYGCQRYLGSLKHMLAQMLKKPID--NPQLE 77 Query: 83 AVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPV 133 ++L ALY+L + P +NEA+E G F N +L + Sbjct: 78 SLLLAALYQLHYTRNAP-HAVVNEAVESIAKIGRGQYRSFANAILRRFLRE 127 >UniRef50_C6P2V1 Sun protein n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P2V1_9PROT Length = 424 Score = 70.8 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 50/122 (40%), Gaps = 5/122 (4%) Query: 13 AVQALYSWQLSQNDIADVEYQFL-AEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLS 71 A +A++ ++ V + L E + + ++L G + L ++ L Sbjct: 8 AAKAVHKVVHGGRNLTQVLSETLRKESKLTAQEKGALQDLCYGTLRYYSRLAYMLDSLLQ 67 Query: 72 RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAA 131 R + E + ++L +A+Y+L + V +++A+ AK+ + VN VL Sbjct: 68 RPVRE--PLLGSLLMVAIYQLEH-TKAGKHVIVDQAVHAAKN-TNPAASGLVNAVLRNYL 123 Query: 132 PV 133 Sbjct: 124 RR 125 >UniRef50_Q8TGY0 tRNA/rRNA cytosine-C5-methylase n=1 Tax=Methanopyrus kandleri RepID=Q8TGY0_METKA Length = 448 Score = 70.4 bits (172), Expect = 2e-11, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 38/122 (31%), Gaps = 4/122 (3%) Query: 12 CAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLS 71 AV+AL + I + + ++ + + + LD L+ Sbjct: 6 LAVKALVLVETRGMPIPEAVERTCRDRPID--VRRSVQAFVYETIKRRNLLDELVAAGSD 63 Query: 72 -RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 + + +LR+ E+ P + + +AK + FVN VL Sbjct: 64 AHPEDVRSPYVRQILRVGTLEMK-IWRNPPPAVTDCMVRIAKRLVGSKAGAFVNAVLRGV 122 Query: 131 AP 132 Sbjct: 123 ER 124 >UniRef50_B6WUQ6 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WUQ6_9DELT Length = 505 Score = 70.4 bits (172), Expect = 2e-11, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 40/111 (36%), Gaps = 3/111 (2%) Query: 24 QNDIADVEYQFLAEQD--VKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVE 81 Q + V Q+ + + D EL G L ++ L + L+ + Sbjct: 60 QAALQQVLEDTARRQEGGLAERDRHLAAELAYGTLRMENRLAFVLGKVLRQPLKLPLPLR 119 Query: 82 KAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAP 132 + + +A Y L +P ++ A++LA+ K VNG L Sbjct: 120 RLL-AVAAYGLLFLDRLPAHAVLHTAVDLARQLYGPGLAKVVNGSLRSVQR 169 >UniRef50_D1J7Q8 N utilization substance protein B homolog(Protein nusB) n=1 Tax=Mycoplasma hominis ATCC 23114 RepID=D1J7Q8_MYCHP Length = 157 Score = 70.4 bits (172), Expect = 2e-11, Method: Composition-based stats. Identities = 23/141 (16%), Positives = 53/141 (37%), Gaps = 12/141 (8%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 + +AR + +Y +L +++ + L ++ L + Sbjct: 21 NKYKARMHIINCIYQSELFNKNLS--IQEILENCGENQLNANEIESL-KIIEAKYDVFTR 77 Query: 65 LMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + K ++ + + +A++ YEL +V INE + ++K + + +KF Sbjct: 78 IAKKFISEDWEWNRILPLSRAIIIYGEYELLFND---PRVVINEMVNISKIYSPNNDYKF 134 Query: 123 VNGVLD----KAAPVIRPNKK 139 +N VLD ++K Sbjct: 135 INKVLDLVSKNVIKKNTKDEK 155 >UniRef50_C5A6U4 SAM-dependent tRNA/rRNA cytosine-C5 methylase n=6 Tax=Thermococcus RepID=C5A6U4_THEGJ Length = 451 Score = 70.0 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 44/125 (35%), Gaps = 4/125 (3%) Query: 11 ECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVL--YFRELLAGVATNTAYLDGLMKP 68 E AL + + + + KD + + + A +D ++ Sbjct: 11 EVVADALSLVEERELSSKHALERVFRKVAGKDREKARGLAHAYVFEIEKWRAKIDFIINS 70 Query: 69 YLSR-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 L +E+L +LRI +E+ R VP +A + I + K KFVN ++ Sbjct: 71 VLKGSKVEDLDPYLANLLRIGTFEIHFR-KVPPAIATDSIIRVVKERFDFSRAKFVNALM 129 Query: 128 DKAAP 132 Sbjct: 130 HSIEK 134 >UniRef50_C5J681 Putative uncharacterized protein MCJ_002820 n=1 Tax=Mycoplasma conjunctivae HRC/581 RepID=C5J681_MYCCR Length = 133 Score = 69.6 bits (170), Expect = 3e-11, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 55/131 (41%), Gaps = 12/131 (9%) Query: 12 CAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLS 71 + LY +L + I V F ++ + F+ + N + L L+ +L+ Sbjct: 2 AVISLLYQSELLEEQIN-VGQIFQDHPELDSEQIKMFKFIA----KNYSLLQKLIAAHLN 56 Query: 72 --RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG--AEDSHKFVNGVL 127 E + + +A+L + EL ++ INE IE++K F + + F+N V+ Sbjct: 57 SQWQWERILPLNRAILLYGISELFFSEH---RIVINEMIEISKEFTADGDKDYGFINAVI 113 Query: 128 DKAAPVIRPNK 138 + ++ K Sbjct: 114 ENVYQYLKRKK 124 >UniRef50_C6XFI6 Fmu (Sun) domain protein n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XFI6_LIBAP Length = 445 Score = 69.2 bits (169), Expect = 4e-11, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 37/95 (38%), Gaps = 2/95 (2%) Query: 40 VKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVP 99 + D + R ++ +D ++ L L + +LR+++ ++ DV Sbjct: 41 LSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVA 99 Query: 100 YKVAINEAIELAKS-FGAEDSHKFVNGVLDKAAPV 133 ++ A+E AK K VN +L + + Sbjct: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE 134 >UniRef50_B2SFT3 tRNA and rRNA cytosine-C5-methylase, sun protein n=17 Tax=Francisella RepID=B2SFT3_FRATM Length = 426 Score = 67.3 bits (164), Expect = 1e-10, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 48/126 (38%), Gaps = 5/126 (3%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R A + + ++ Q L + ++ + D + + L + L+ ++ Y Sbjct: 4 RAIAAKTILDILDNK-YSLLTIEQKLVKLNLLEQDKSFIKLLCYEFFRHYYSLEKIIALY 62 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 L++ + +V ++ + ++ PY INE + K + K VN +L + Sbjct: 63 LTQKTKVKAKV---LIMLGALQI-FEIKQPYYATINETVAACKVLKIIWAKKLVNRILRE 118 Query: 130 AAPVIR 135 I Sbjct: 119 MTRNIE 124 >UniRef50_Q16CE2 RRNA methyltransferase RsmB n=15 Tax=Rhodobacterales RepID=Q16CE2_ROSDO Length = 423 Score = 66.9 bits (163), Expect = 2e-10, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 40/128 (31%), Gaps = 11/128 (8%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR AV L ++++ ++ D L D +++ Sbjct: 8 ARRSAVYLLDQILGEGRLMSELLTAG-TLDKLEPEDRARAARLAQDTLRGLERADRILQK 66 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELA---KSFGAEDSHKFVNG 125 +LS+ + LR+ EL + +N +EL K + N Sbjct: 67 HLSKYP---PLTVRNALRVGAVEL--CTGTAAHGVVNAMVELVSRHKHYSH--LKGLTNA 119 Query: 126 VLDKAAPV 133 VL K A Sbjct: 120 VLRKVAAD 127 >UniRef50_C5SHX2 Sun protein n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SHX2_9CAUL Length = 464 Score = 66.9 bits (163), Expect = 2e-10, Method: Composition-based stats. Identities = 16/129 (12%), Positives = 46/129 (35%), Gaps = 8/129 (6%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR A+ + + ++ + + + + + L V LD ++ Sbjct: 45 ARVAAITLVEAALEKRSGFDEAAASA-DFLKLSETERAFAGALALLVLRRLGQLDHVI-- 101 Query: 69 YLSRLLEELGQV-EKAVLRIALYELSKRSDVPYKVAINEAIELA-KSFGAEDSHKFVNGV 126 + +++ + +LRI + ++ VP A++ +++A + +N + Sbjct: 102 --HKKTQKMPPEAVRQLLRIGMAQIFFMQ-VPDFAAVSTTVKIAERENKTRPFKGLINAI 158 Query: 127 LDKAAPVIR 135 L + Sbjct: 159 LRGLIRDGK 167 >UniRef50_B6W6K6 Putative uncharacterized protein n=1 Tax=Anaerococcus hydrogenalis DSM 7454 RepID=B6W6K6_9FIRM Length = 426 Score = 66.1 bits (161), Expect = 3e-10, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 6/123 (4%) Query: 11 ECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL 70 + + LY D+ E D+ Y + + GV N YL+ ++ Sbjct: 5 KLILDGLYRICYKNEKSTDIINDIAREVS----DISYITKNIYGVLENKLYLEYIIGKLS 60 Query: 71 SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 +++L + +L I +Y + +NE + L K S FVN VL Sbjct: 61 KIKIKKLDKKVLLILEIGIYNIHFLDRK-NYAIVNELVNLTKKVSY-KSKSFVNAVLRSY 118 Query: 131 APV 133 Sbjct: 119 IRD 121 >UniRef50_A4BP82 Fmu, rRNA SAM-dependent methyltransferase n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BP82_9GAMM Length = 423 Score = 66.1 bits (161), Expect = 4e-10, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 47/120 (39%), Gaps = 2/120 (1%) Query: 14 VQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL 73 +Q L + + +A D +EL GV + L+ L+ L + Sbjct: 1 MQTLQDVLAHGRTLPNALADSVAALQ-DSRDRALCQELCYGVLRWHSRLEALVLNLLEQR 59 Query: 74 LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPV 133 + +L + LY+L + +P A++ ++ A++ G + +VN VL + Sbjct: 60 PRNRDRDLTLLLELGLYQLMY-TQIPPHAAVSATVDTARALGKSWAAGWVNAVLRRFQRE 118 >UniRef50_B7J3C2 Sun protein n=2 Tax=Acidithiobacillus ferrooxidans RepID=B7J3C2_ACIF2 Length = 434 Score = 65.7 bits (160), Expect = 5e-10, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 41/124 (33%), Gaps = 6/124 (4%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R+ A+ L D L + D + L+ G + L Sbjct: 20 RKAAITVL-----RGVDSGQTVDAALLPVSLTGTDRATLQWLVLGTLREFLSVQALSAKL 74 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 L + E +L +AL+EL P +N+ +E+ ++ + +N VL + Sbjct: 75 LRKPWREEDADLGFLLSLALFELRHGQR-PAFAVVNDWVEMTEAVKKPWARGLMNAVLRR 133 Query: 130 AAPV 133 Sbjct: 134 YLRE 137 >UniRef50_A5V7N4 Fmu (Sun) domain protein n=7 Tax=Sphingomonadales RepID=A5V7N4_SPHWW Length = 422 Score = 65.4 bits (159), Expect = 5e-10, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 42/125 (33%), Gaps = 7/125 (5%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR A++ L + + A+ D D D + + A V TA LD L+ Sbjct: 10 ARRAALRLLDAVLRRGLPLEAAMDGACADLDRAD-DRGFAHAIAAEVLRRTADLDALIDG 68 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 R L + VLRIAL + P AI + L K V+ V Sbjct: 69 ATERPLPA-DAKARMVLRIALAQALAL-GTPGHAAITTVLPLV----DGGPRKLVHAVFG 122 Query: 129 KAAPV 133 Sbjct: 123 AVMRD 127 >UniRef50_Q3YSG7 Putative uncharacterized protein n=1 Tax=Ehrlichia canis str. Jake RepID=Q3YSG7_EHRCJ Length = 148 Score = 65.4 bits (159), Expect = 6e-10, Method: Composition-based stats. Identities = 17/119 (14%), Positives = 48/119 (40%), Gaps = 9/119 (7%) Query: 20 WQLSQNDIADV------EYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL--S 71 + I D+ Y+ D+ +D +++ + ++ + +L Sbjct: 1 MIFNNYTINDIDNLIDYLYEMKEVLDLIQIDNQLLIKIMNTMLLTFNTINSTIATFLNEK 60 Query: 72 RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 ++ + + ++++ A+ EL S+ + INE + +A + F+N +L++ Sbjct: 61 WSIDRINLISLSIIKTAVCELI-CSNTDAVIIINEYVNIASHILEKTEVNFINAILNQV 118 >UniRef50_B6BVG1 Sun protein n=1 Tax=beta proteobacterium KB13 RepID=B6BVG1_9PROT Length = 412 Score = 64.2 bits (156), Expect = 1e-09, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 54/124 (43%), Gaps = 9/124 (7%) Query: 13 AVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSR 72 A + L +S I + +FL E++ + + ++++ G + D ++K ++ + Sbjct: 8 AAKILSEL-ISGRKIDTLFNRFLKEEN----NKNFIKDIVYGGIRDFYLNDYILKKFVKK 62 Query: 73 LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAP 132 + + K +L +Y+++ +S +NEA++ AK + + VN VL Sbjct: 63 DIN--DHLIKYLLMNTIYQINHQSK-AEFTVVNEAVKAAKKI-NNNFYNLVNAVLRNYLR 118 Query: 133 VIRP 136 Sbjct: 119 EKDK 122 >UniRef50_Q8TGZ4 tRNA/rRNA cytosine-C5-methylase n=1 Tax=Methanopyrus kandleri RepID=Q8TGZ4_METKA Length = 452 Score = 64.2 bits (156), Expect = 1e-09, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 54/135 (40%), Gaps = 18/135 (13%) Query: 1 MKPAARRR--ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKD-----VDVLYFRELLA 53 M +R+ AR W+ ++ + + + L + V+D Y EL Sbjct: 1 MSSLSRQELTARVFV-----EWEETRRSLRECVKKVLLNEGVRDHRVWGTIHAYCFEL-- 53 Query: 54 GVATNTAYLDGLMKPYLSR-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAK 112 +D ++ + L +L + LR+ +E+ +DV +A NEA+++ Sbjct: 54 --MKRLRTVDAFLEATIRNAKLFDLDPWVRNALRVGTFEMKF-NDVKPAIATNEAVKIVV 110 Query: 113 SFGAEDSHKFVNGVL 127 E +FVN VL Sbjct: 111 ECVGEGPARFVNAVL 125 >UniRef50_C5V0U6 Sun protein n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V0U6_9PROT Length = 421 Score = 63.8 bits (155), Expect = 1e-09, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 41/125 (32%), Gaps = 9/125 (7%) Query: 12 CAVQALYSWQLSQNDIADVEYQFLAEQDV-KDVDVLYFRELLAGVATNTAYLDGLMKPYL 70 A Q + ++ V + L + V ++L G L+ +++ L Sbjct: 7 AATQIVQQVMEDGRNLNQVLDESLRRKSVWTPAQRAALQDLSYGTLRFYGQLNAILELLL 66 Query: 71 SRLL--EELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 + + + +L +ALY+L S ++ A+ A VN +L Sbjct: 67 HKHMTDHRISY----LLLVALYQLQY-SRAAQHAVVDHAVRSA-DILNPKIRGLVNAILR 120 Query: 129 KAAPV 133 Sbjct: 121 NFLRN 125 >UniRef50_Q7Y092 Os03g0656900 protein n=9 Tax=Poaceae RepID=Q7Y092_ORYSJ Length = 287 Score = 63.8 bits (155), Expect = 2e-09, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 3/63 (4%) Query: 71 SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 + + +E +L IA+ E++ P+K+ INEA++LAK F + + +NG L Sbjct: 212 DEPVARI--LELCILHIAMAEMT-SKGTPHKIVINEAVDLAKRFCDGGAPRVINGCLRTF 268 Query: 131 APV 133 Sbjct: 269 VKD 271 >UniRef50_D2UG22 Putative trna and rrna cytosine-c5-methylase protein n=1 Tax=Xanthomonas albilineans RepID=D2UG22_XANAL Length = 437 Score = 63.4 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 16/115 (13%), Positives = 34/115 (29%), Gaps = 2/115 (1%) Query: 23 SQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEK 82 + L D + V + ++ +L + L + + Sbjct: 27 RGRSLKAELAAALPGLP-DARDRALVEAICFAVLRRRPAYEAALRLWLQKQLPQRDAELR 85 Query: 83 AVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPN 137 A+L +L P A++ +E ++ VN +L +A P Sbjct: 86 ALLLAGFAQLDVLGLAP-HAALSATVEATRALERPRQAGLVNALLRRALRDGLPE 139 >UniRef50_P45679 Ribosomal RNA small subunit methyltransferase B n=6 Tax=Coxiella burnetii RepID=RSMB_COXBU Length = 430 Score = 63.4 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 13/96 (13%), Positives = 32/96 (33%), Gaps = 1/96 (1%) Query: 41 KDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPY 100 + +EL G L + + L L + ++ Y+L+ ++P Sbjct: 28 NKKNQSLIQELCYGTLRWYFKLKLIAEKLLHAPLRDKDHDIFCLILTGFYQLNYL-NIPT 86 Query: 101 KVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRP 136 +N+ + A+ + +N +L + Sbjct: 87 HTIVNQTVGAAEILKKPWAKGLINKLLRRFIAEKDE 122 >UniRef50_B5Y8M6 Putative uncharacterized protein n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y8M6_COPPD Length = 148 Score = 63.4 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 2/130 (1%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 RE +Q L ++L D+ + D + + LL N +D + Sbjct: 13 RELLLQELLGYELGLTSQEDLWPRLKVALPKSDRVKRHIKRLLNAYLENREEIDIWIDHS 72 Query: 70 LS-RLLEELGQVEKAVLRIALYELSKR-SDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 L + +EK ++R+A+ E + + ++ +++A+ + E K ++ ++ Sbjct: 73 LKSKSFAAYSDLEKMIMRLAVVETRFFGDEKMMPIIVSTWVDIARRYVDESFAKAIHAIM 132 Query: 128 DKAAPVIRPN 137 + Sbjct: 133 GTCYEEQNAD 142 >UniRef50_Q4A684 Putative uncharacterized protein n=1 Tax=Mycoplasma synoviae 53 RepID=Q4A684_MYCS5 Length = 156 Score = 62.7 bits (152), Expect = 4e-09, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 54/153 (35%), Gaps = 24/153 (15%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 KP +R+ R +Q LY +L + + +D +E + V N Y Sbjct: 5 KPKTQRQKRIEKIQILYQVEL----LNLQKDFDFVLNMEPYLDAKQTKE-VFVVLKNYDY 59 Query: 62 LDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG---- 115 ++ L + L + +A+L A E + ++ INEA+E+ K F Sbjct: 60 FKNFLESLLDPSWNWQRLSYMLRAILLNACAEFEF---IDARIVINEAVEITKIFFQLTS 116 Query: 116 ----------AEDSHKFVNGVLDKAAPVIRPNK 138 + KF N +L+ + Sbjct: 117 DTSAKEYNSIDYNLFKFTNALLETYYKTKVKIE 149 >UniRef50_C1TRU2 tRNA/rRNA cytosine-C5-methylase n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TRU2_9BACT Length = 479 Score = 61.9 bits (150), Expect = 6e-09, Method: Composition-based stats. Identities = 16/122 (13%), Positives = 36/122 (29%), Gaps = 4/122 (3%) Query: 11 ECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL 70 E A++ ++ V + D L+ + + ++ +L Sbjct: 45 EAALEVWREV-RRGRFASESLRAI--SDRVSEKDRPLAATLVYSLIRRESLWKEIVGRFL 101 Query: 71 SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 + + L + + +V +N +E K E + VN VL + Sbjct: 102 KTGSSGVSPAVRDALMVGAAGSLELRTFEPRVLVNALVEWTKCR-DERGSRVVNAVLRRI 160 Query: 131 AP 132 Sbjct: 161 VE 162 >UniRef50_B3PM53 Transcription termination factor n=1 Tax=Mycoplasma arthritidis 158L3-1 RepID=B3PM53_MYCA5 Length = 148 Score = 61.9 bits (150), Expect = 7e-09, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 50/127 (39%), Gaps = 14/127 (11%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R + +Y +L + I D+ ++ + + L + Sbjct: 24 RVKLITFIYQSELFEEKID--VNYLFEHFDLSKRELDSLT-----IISEKYDLFQSIAKR 76 Query: 70 L---SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS-HKFVNG 125 + + + +A++ ++EL S KV INE + +AKSF +DS +KFVN Sbjct: 77 SILEQWTWQRIQPLARAIIIYGIFELFFNS---PKVVINEMVNIAKSFIPDDSTYKFVNR 133 Query: 126 VLDKAAP 132 LD A Sbjct: 134 TLDMIAK 140 >UniRef50_UPI0000E87C3C sun; rRNA methylase n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87C3C Length = 423 Score = 61.5 bits (149), Expect = 7e-09, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 45/115 (39%), Gaps = 5/115 (4%) Query: 22 LSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVE 81 L N++ V + L D V + + G + L+ + +E +V Sbjct: 16 LDGNNLDHVFEKILKNPD-DSVQQSQVKAITYGTLRYMGQSNYLIGKLIKNKIE--NRVL 72 Query: 82 KAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRP 136 ++++ +A+Y+L++ + +++A+ AK S VN VL Sbjct: 73 ESLIHVAIYQLTQEAHT-DFTVVDQAVRAAKKIDFRKS-NLVNAVLRTFLRNKEK 125 >UniRef50_D1N3Y9 Fmu (Sun) domain protein n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N3Y9_9BACT Length = 409 Score = 61.5 bits (149), Expect = 7e-09, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 7/126 (5%) Query: 11 ECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL 70 E AV L + + + ++ D L ++ LL +L+G + Sbjct: 13 EEAVAGLAAVEAGEANLDDFLDFRLQYPEL----RRSISNLLFLCFRRKRFLEGWIGRLA 68 Query: 71 SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 +R + +L L +++ ++ + + A+N A+ L K G KFVN VL +A Sbjct: 69 ARPPR---PAVRRLLTAVLAQITFQTGIAPESAVNIAVGLVKHSGKLQEAKFVNAVLRRA 125 Query: 131 APVIRP 136 +P Sbjct: 126 LEQPQP 131 >UniRef50_Q8TGY2 tRNA/rRNA cytosine-C5-methylase n=1 Tax=Methanopyrus kandleri RepID=Q8TGY2_METKA Length = 431 Score = 59.6 bits (144), Expect = 3e-08, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 44/122 (36%), Gaps = 9/122 (7%) Query: 20 WQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSR-LLEELG 78 + + + L + + + L + +D ++ L +E+L Sbjct: 1 MEERGHSLKAALRNALR--GIGGRRHRFVQALAHELVRVLGNVDLVLNRVLRGSTVEDLH 58 Query: 79 QVEKAVLRIALYELSKRSDVPYKV--AINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRP 136 + LR+ +E+ R + P V A+ +++ K +F N +L + + P Sbjct: 59 PYLRNALRVGTWEIHWRREHPGPVTKAV---VDVVKERVGPKHARFANAILRQVER-VNP 114 Query: 137 NK 138 + Sbjct: 115 EE 116 >UniRef50_C9M5B8 Putative Sun protein n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M5B8_9BACT Length = 438 Score = 59.2 bits (143), Expect = 4e-08, Method: Composition-based stats. Identities = 18/123 (14%), Positives = 35/123 (28%), Gaps = 6/123 (4%) Query: 11 ECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL 70 E A++ L + + Q L + + D L+ L YL Sbjct: 5 EAALKVLSAVEKGGFAS-----QKLRDLPLDAPDRTLAASLVYACLRRAELWRFLAFEYL 59 Query: 71 SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 E + L++ + + +N ++ K K VN V+ + Sbjct: 60 RPKPEGFSPSVRLALQLGAAGALELKNFAVPALVNGLVDWTKR-SDRGGAKVVNAVMRRL 118 Query: 131 APV 133 Sbjct: 119 LDQ 121 >UniRef50_D2RGI9 Fmu (Sun) domain protein n=2 Tax=Archaeoglobaceae RepID=D2RGI9_ARCPR Length = 443 Score = 59.2 bits (143), Expect = 4e-08, Method: Composition-based stats. Identities = 18/129 (13%), Positives = 45/129 (34%), Gaps = 3/129 (2%) Query: 11 ECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL 70 E + L + ++ + + L+ + + + +D +++ Sbjct: 6 ELVAEVLKVIEETKLSEKEAIKRCLSGKISDHAIWSSVHAYVFEIEKRLNLIDFILRNCF 65 Query: 71 SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 R ++ V K +LR+ +YE+ V +A + + + K N VL + Sbjct: 66 -REFDKQNTVFKNLLRVGVYEM-HFKGVHPALATDSIVRIVKQRFNLKMASLANAVLRR- 122 Query: 131 APVIRPNKK 139 A ++ Sbjct: 123 AEKFDYERR 131 >UniRef50_Q9V089 Sun/NOL1/NOP nucleolar protein n=3 Tax=Pyrococcus RepID=Q9V089_PYRAB Length = 450 Score = 58.8 bits (142), Expect = 5e-08, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 42/125 (33%), Gaps = 4/125 (3%) Query: 11 ECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVD--VLYFRELLAGVATNTAYLDGLMKP 68 E AL + + + + KD + + + A +D ++ Sbjct: 11 EIIADALTLVEEKELSSKHALERIFKRVEGKDKETARGIAHAYVFEIEKWRAKIDFILNS 70 Query: 69 YLSR-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 L +E+L +LRI +E+ V +A + + + K KF N +L Sbjct: 71 VLRGSKVEDLDLYLANLLRIGTFEMKF-KGVNPAIATDSVVRVVKEKFDLTKAKFANAIL 129 Query: 128 DKAAP 132 + Sbjct: 130 REVEK 134 >UniRef50_A1B5L0 Fmu (Sun) domain protein n=30 Tax=Alphaproteobacteria RepID=A1B5L0_PARDP Length = 535 Score = 58.8 bits (142), Expect = 6e-08, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 47/129 (36%), Gaps = 10/129 (7%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 AR AR A++ L + + + + V +D Sbjct: 121 ARDGARSGALRLLAAVD-DGATLDEAGALTDRLAPAERARARRLA---LEVLRRADRVDL 176 Query: 65 LMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKS--FGAEDSHKF 122 L+ P L+R +LR+A E+ + P A+N A+ LA++ + + Sbjct: 177 LLAPMLARRPR---PEIMRILRLAAVEMLALGEAP-HGAVNAAVALARASGRKGQAAAGM 232 Query: 123 VNGVLDKAA 131 VN VL K A Sbjct: 233 VNAVLRKIA 241 >UniRef50_D0GJC1 Putative ribosomal RNA small subunit methyltransferase B n=1 Tax=Leptotrichia goodfellowii F0264 RepID=D0GJC1_9FUSO Length = 442 Score = 58.4 bits (141), Expect = 6e-08, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 44/115 (38%), Gaps = 5/115 (4%) Query: 22 LSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVE 81 +S + ++ + L+ ++ N Y+D L++ + + + Sbjct: 26 MSGKYSNIQLNHYFKTKNYLKKEKLFITNIINITIKNLIYIDYLLEKTVKNIQKR---KI 82 Query: 82 KAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRP 136 K +LRI++ +L ++ + EA+E+AK S FVN L Sbjct: 83 KQLLRISVAQL-FFTEADNAGVLYEAVEVAKIINNHQS-GFVNATLQSVLRNKDE 135 >UniRef50_Q2NJE9 N utilization substance protein B n=4 Tax=Candidatus Phytoplasma RepID=Q2NJE9_AYWBP Length = 138 Score = 58.0 bits (140), Expect = 9e-08, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 67/137 (48%), Gaps = 16/137 (11%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLM 66 R R ++ LY + QN++ + + +F+++ T ++D ++ Sbjct: 11 RLLRIELMKLLYQYDFYQNNLTLSQTNT-------NPIFTFFQKI----ITKLKFIDEII 59 Query: 67 KPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG---AEDSHKF 122 L + L +V++A++R+A YEL +++ + + I+EAIE+ K F E HKF Sbjct: 60 TKSLYDYKINRLNKVDRAIIRLATYELL-ETNISHAIIIDEAIEITKQFCNLNDEKQHKF 118 Query: 123 VNGVLDKAAPVIRPNKK 139 N +LD+ ++ KK Sbjct: 119 NNKLLDQIYRQLQMYKK 135 >UniRef50_B4RCX9 rRNA methyltransferase RsmB n=8 Tax=Alphaproteobacteria RepID=B4RCX9_PHEZH Length = 598 Score = 58.0 bits (140), Expect = 1e-07, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 9/98 (9%) Query: 39 DVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKA--VLRIALYELSKRS 96 + D + R L + +D ++ L + ++ VLR+ +L Sbjct: 212 RLAPRDRAFARALAMAALRHLGPIDAALQARLRKP-----PPDRIVQVLRLGAAQLLVL- 265 Query: 97 DVPYKVAINEAIEL-AKSFGAEDSHKFVNGVLDKAAPV 133 P A++ ++L A G + VN VL + Sbjct: 266 KTPAHAAVSATVDLAASQKGGQAFKGLVNAVLRGLSRE 303 >UniRef50_C0B8Y2 Putative uncharacterized protein n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0B8Y2_9FIRM Length = 77 Score = 58.0 bits (140), Expect = 1e-07, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 2/68 (2%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNTAYLDGLMKP 68 RE A+ L + V Q L + + D + L G LD ++ Sbjct: 11 RELALMILLEIE-RGEKSHIVLRQVLEKYQYLSKQDRAFLTRLAEGTTERRIELDYIINQ 69 Query: 69 YLSRLLEE 76 + E+ Sbjct: 70 FSKVKTEK 77 >UniRef50_D0KVS1 Sun protein n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KVS1_HALNC Length = 437 Score = 57.7 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 41/123 (33%), Gaps = 3/123 (2%) Query: 15 QALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLL 74 Q L S + + L++ V + + V + L L R + Sbjct: 12 QLLLSVVGQGVSLDAALGRVLSQAQ--PVHRGLVQAMGYEVLRHYEALVFWRDSLLERPI 69 Query: 75 EELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVI 134 + +L + L + + ++N A++ A+ G + +N VL +A I Sbjct: 70 PAKSAIIALLLLVGLERIRGARREASR-SVNSAVQAARELGHPWATGLLNAVLRRAVRQI 128 Query: 135 RPN 137 Sbjct: 129 EEG 131 >UniRef50_A9RW70 Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RW70_PHYPA Length = 207 Score = 57.7 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 45 VLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKA-VLRIALYELSKRSDVPYKVA 103 +E A L ++ L ++ + + VL++AL E+ +DVP +V Sbjct: 122 RTLVKETAYRWLQQEAILMEIIP--LKWKVQPKAALLQICVLQMALAEIE-ATDVPPRVV 178 Query: 104 INEAIELAKSFGAEDSHKFVNGVLDKAAP 132 +NEA+ELAK F + + +NG L Sbjct: 179 VNEAVELAKRFCDLAAPRIINGCLGSYIR 207 >UniRef50_C7I4U3 Sun protein n=1 Tax=Thiomonas intermedia K12 RepID=C7I4U3_THIIN Length = 457 Score = 56.1 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 38/126 (30%), Gaps = 16/126 (12%) Query: 13 AVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSR 72 AVQA ++ Q + L V + + L+ + Sbjct: 31 AVQA-------GASLSTALPQAATRGKWDASQRGAAQALSFAVLRHLGTVRALLTDLQPK 83 Query: 73 LLEELGQVEKAVLRIALYELSKRSDVPYK----VAINEAIELAKSF-GAEDSHKFVNGVL 127 + + + VL+ AL D P +N+A+E K + F N +L Sbjct: 84 PIH--PPLLRDVLQTALA--LLLPDAPAHYAAHTVVNQAVEACKRTPSLRHAQGFANALL 139 Query: 128 DKAAPV 133 + Sbjct: 140 RRFVSR 145 >UniRef50_B1ZZX2 Fmu (Sun) domain protein n=2 Tax=Opitutaceae RepID=B1ZZX2_OPITP Length = 488 Score = 55.3 bits (133), Expect = 6e-07, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 49/153 (32%), Gaps = 31/153 (20%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 AR A A + L W + + ++ + + + L+ G + +D Sbjct: 7 ARTTAWPAAARLLARWLDRRERVDELLESL--GGSLTGTERARCQHLVFGAIRHFGRIDA 64 Query: 65 LMKPYLSRLLEELGQVEKAVLRIALYELS-------------------KRSDVPYKVA-- 103 + +S +AVL +A +EL D P V Sbjct: 65 AIGRLVSHSPR---FATRAVLLVAGFELIEARAERGGAPTRASEAGTTNAPDQPTPVVDG 121 Query: 104 -----INEAIELAKSFGAEDSHKFVNGVLDKAA 131 ++ A+E K + + VN V+ K A Sbjct: 122 RVAKIVHHAVEQTKQLASPAEARMVNAVVRKLA 154 >UniRef50_Q2YC21 Sun protein n=7 Tax=Betaproteobacteria RepID=Q2YC21_NITMU Length = 442 Score = 55.0 bits (132), Expect = 7e-07, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 47/142 (33%), Gaps = 20/142 (14%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLA-EQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R R A +S + V + + D ++L GV LD L Sbjct: 3 RTQRLAATTV--ERVVSGASLTTVLQETWRSHSGLSDQQRGAIQDLSYGVLRFYGQLDIL 60 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIEL----------AKSFG 115 + L++ L+ Q + +L + LY+L S V ++ A+ +++ Sbjct: 61 LGLLLNKPLK--DQSLRYLLLVGLYQLQY-SKTAPHVVVDSAVSASCSPSIDGRNSRNML 117 Query: 116 AEDSHK----FVNGVLDKAAPV 133 K VN +L Sbjct: 118 DPRHAKSIGGLVNAILRNFLRK 139 >UniRef50_D1H5W4 Whole genome shotgun sequence of line PN40024, scaffold_4.assembly12x (Fragment) n=7 Tax=Magnoliophyta RepID=D1H5W4_VITVI Length = 218 Score = 55.0 bits (132), Expect = 7e-07, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 51/125 (40%), Gaps = 11/125 (8%) Query: 19 SWQLSQNDIADVEYQFLAEQD---VKDVDVLYFRELLAGVAT----NTAYLDGLMKPYLS 71 + + +E + L+ + + + R+LL V + +D + P Sbjct: 81 ELLRNNEKESAIEAEVLSAPPKLVYGKLILRFTRKLLVAVVDKWNSHVLVIDKVAPPNWK 140 Query: 72 R-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 + +E +L +A+ E++ +++ INEA++LAK F + + +NG L Sbjct: 141 NEPAGRI--LELCILHLAMSEIAVL-GTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTF 197 Query: 131 APVIR 135 + Sbjct: 198 VKDLE 202 >UniRef50_B9GXX5 Predicted protein n=2 Tax=Spermatophyta RepID=B9GXX5_POPTR Length = 218 Score = 53.0 bits (127), Expect = 3e-06, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 7/122 (5%) Query: 19 SWQLSQNDIADVEYQFLAEQD---VKDVDVLYFRELLAGVATNTAYLDGLMKPYLS-RLL 74 QLS + +E + L+ + + + R+LL V ++ Sbjct: 81 ELQLSDEKESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDSHVLVIDKVSPPNWK 140 Query: 75 EELGQVEK--AVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAP 132 E +L +A+ E++ +++ INEA++LAK F + +NG L Sbjct: 141 NEPAGRILEFCILHMAMSEITVL-GTRHQIVINEAVDLAKRFCDGAGPRIINGCLRTFLK 199 Query: 133 VI 134 + Sbjct: 200 DL 201 >UniRef50_D1Y2M1 Fmu n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y2M1_9BACT Length = 439 Score = 52.7 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 39/127 (30%), Gaps = 4/127 (3%) Query: 11 ECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL 70 E A+ +++ V D L + + + L + +L Sbjct: 13 EAAMYLWRQVDKGGI-VSESLRTL--GDRVSPPDRTLAASLAYALVRRLSLWEHLREKFL 69 Query: 71 SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 E+ Q +A + + L++ V I+ IE K+ + VN VL + Sbjct: 70 LPRPEKFSQSVRAAVLMGAAGLTELEKFAPAVLISSLIEWTKTR-DPRGARVVNAVLRRV 128 Query: 131 APVIRPN 137 Sbjct: 129 LEEGPAE 135 >UniRef50_Q98R41 Putative uncharacterized protein MYPU_1690 n=1 Tax=Mycoplasma pulmonis RepID=Q98R41_MYCPU Length = 160 Score = 51.9 bits (124), Expect = 6e-06, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 60/135 (44%), Gaps = 11/135 (8%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 +R +R + +Y W LS++++ + +++ ++L + N + L Sbjct: 20 KRLSRFLMICEIYKWYLSESNLDINDDFVNQAFSLEE------NKVLKLILKNKTKFENL 73 Query: 66 MKPYLSR---LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF-GAEDSHK 121 + +L E++ + KA++ ++ D+ V I+EA+E++K + Sbjct: 74 ISKFLKSNSLKWEQILPLIKAIILFFSVQI-SLQDLDGPVLISEALEISKDLIYEKKEVA 132 Query: 122 FVNGVLDKAAPVIRP 136 F+N +LDK + + Sbjct: 133 FINAILDKISKFFKE 147 >UniRef50_C0ADS6 Fmu (Sun) domain protein (Fragment) n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0ADS6_9BACT Length = 201 Score = 51.9 bits (124), Expect = 7e-06, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 49/133 (36%), Gaps = 18/133 (13%) Query: 12 CAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLS 71 A + L W + + + ++ + L+ G + ++G++ P Sbjct: 20 AAARLLVRWLDERARVDGLLAVL--PANLGRTGRARCQNLVLGALRHLGRIEGIITPL-- 75 Query: 72 RLLEELGQVE-KAVLRIALYELS------KRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + + + E +AV +A YEL + V + A+E K ++ + VN Sbjct: 76 --MSRMPRAEVQAVFLLAGYELIEGGGDGHVAKVAHH-----AVEQTKRLASQAEARMVN 128 Query: 125 GVLDKAAPVIRPN 137 ++ K A + Sbjct: 129 AIVRKLASALADE 141 >UniRef50_D1B789 Fmu (Sun) domain protein n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B789_THEAS Length = 430 Score = 51.5 bits (123), Expect = 9e-06, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 8/114 (7%) Query: 23 SQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEK 82 ++ + + + D L+ G + +++ L R +EL V + Sbjct: 9 KGAFASEALR--IVSEGMSPEDRRLASLLVYGALRRRSLWRNMVERRLKRPFKELKPVTR 66 Query: 83 AVLRIALY---ELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPV 133 L I EL P +++ + K+ GAED + VL + Sbjct: 67 DGLIIGAAALMELRNFRPGPLYGGLSQCL---KAEGAEDQVPILVAVLKRIERE 117 >UniRef50_UPI00003837A7 COG0144: tRNA and rRNA cytosine-C5-methylases n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI00003837A7 Length = 188 Score = 49.6 bits (118), Expect = 3e-05, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 47/139 (33%), Gaps = 7/139 (5%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 AAR ARE L + + D Q + D R + ++ Sbjct: 21 AARHVAREAVATLLGAA--RGLALEDALAQAGRGVGLAPADAALARAIATASFRRLGFIR 78 Query: 64 GLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF-GAEDSHKF 122 + L L + A+L ++ + V A++ ++ LAK+ + Sbjct: 79 AALAARLRDGLPDDRPHLLALLVTGAAQILDLA-VADHAAVDLSVRLAKADPQLQHLAPL 137 Query: 123 VNGVLDKAAPV---IRPNK 138 VN VL + A IR + Sbjct: 138 VNAVLRRIARERDAIRAEE 156 >UniRef50_UPI000169938E Sun protein n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI000169938E Length = 104 Score = 47.6 bits (113), Expect = 1e-04, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 6/105 (5%) Query: 1 MKPAARRRA---RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVAT 57 M R+ A R A + L L ++D+ + L D D +EL GV Sbjct: 3 MLATQRKSAADPRLIAARVLRDV-LKGRSLSDLLPERLNGLD-DPRDRALAQELCYGVMR 60 Query: 58 NTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKV 102 L L+ L + L+ Q +A++ I LY+LS+ V Sbjct: 61 GYPRLQALVGLLLKKPLKAKDQDLQALILIGLYQLSEM-RVAAHA 104 >UniRef50_A6DSU1 tRNA and rRNA cytosine-C5-methylase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DSU1_9BACT Length = 407 Score = 47.6 bits (113), Expect = 1e-04, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 41/114 (35%), Gaps = 7/114 (6%) Query: 12 CAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL- 70 A Q L +W S N D+E L + D+ +L V L+ ++K Sbjct: 12 LATQVLKNWTQSHNF--DLELNRLRRSGNHESDLKRASQLCLCVFRKKESLEKIVKKLSQ 69 Query: 71 SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 R +L ++ + + + + A+E AK ++ F+N Sbjct: 70 KRPRGR----VMHLLLPSMAAMLYMDKITPQGFADSAVEAAKKILSKHEANFLN 119 >UniRef50_C8WDB8 Fmu (Sun) domain protein n=3 Tax=Zymomonas mobilis RepID=C8WDB8_ZYMMN Length = 468 Score = 44.9 bits (106), Expect = 8e-04, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 48/139 (34%), Gaps = 14/139 (10%) Query: 2 KPAARRRA-------RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAG 54 +P R+ A R+ A+Q L + + V + + ++ D L A Sbjct: 34 RPPQRKNAQPIGLPVRKAALQLLEAVLRQGLPLEQVIG-RITQGLKQNADRALVHALAAA 92 Query: 55 VATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 V LD L+ ++ L + VLR+AL + P VAI + L Sbjct: 93 VLRWCHDLDQLIDSATAKPLA-PDVKARMVLRMALAQKLVLKQ-PAHVAIATVLPLV--- 147 Query: 115 GAEDSHKFVNGVLDKAAPV 133 + V+GV Sbjct: 148 -DGGPRRLVHGVYGSLDRR 165 >UniRef50_Q8TGZ8 tRNA/rRNA cytosine-C5-methylase n=1 Tax=Methanopyrus kandleri RepID=Q8TGZ8_METKA Length = 449 Score = 44.2 bits (104), Expect = 0.001, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 52/132 (39%), Gaps = 11/132 (8%) Query: 9 AR--ECAVQALYSWQLSQNDIAD-VEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 AR A ++L +++ V + L+E D R ++ V L+ + Sbjct: 6 ARCYALAAKSLIEVMRTKSYPIQYVLRKTLSEY--DDKTQSVTRSMVYDVLRRYGTLERV 63 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 ++ EL +E+A++ +A E+ P V + A AK G H+ V+G Sbjct: 64 VEDVSR---SELPPLERALVMVAANEVLYEGKHPAPVT-DSATRAAKELGLN--HRRVHG 117 Query: 126 VLDKAAPVIRPN 137 V+ RP Sbjct: 118 VVADLEEYERPE 129 >UniRef50_Q7NAX6 Putative uncharacterized protein n=1 Tax=Mycoplasma gallisepticum RepID=Q7NAX6_MYCGA Length = 132 Score = 43.8 bits (103), Expect = 0.002, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 48/120 (40%), Gaps = 9/120 (7%) Query: 14 VQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLS-- 71 + +Y L ++ ++ +D+ D + G+ + + +L Sbjct: 20 LTFIYQALLLDLNLDEIYQAISQLEDL--KDQEFLTN-WTGLINQVPTI---VSAHLKES 73 Query: 72 RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAA 131 L + KA+ + + E +K + I++A +L + +G +S K V+ +L+K Sbjct: 74 WSWNRLDYMIKALFNLVITE-AKVLKTEKAILISQATKLIQEYGDLNSIKLVSAILNKVI 132 >UniRef50_UPI000196CC25 hypothetical protein CATMIT_02482 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196CC25 Length = 80 Score = 42.3 bits (99), Expect = 0.005, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 2/74 (2%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKD--VDVLYFRELLAGVATN 58 M+ R+ ARE AV A+Y W +++ A++ + + + L+ V N Sbjct: 1 MEKTIRQIAREKAVIAVYQWLTVDASKEELKEYVHADEALIEGRSAEQFCYWLIDTVMEN 60 Query: 59 TAYLDGLMKPYLSR 72 + L+ L + Sbjct: 61 KGSYEALLNTKLKK 74 >UniRef50_B6IQ69 tRNA and rRNA cytosine-C5-methylase, putative n=1 Tax=Rhodospirillum centenum SW RepID=B6IQ69_RHOCS Length = 456 Score = 41.9 bits (98), Expect = 0.007, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 14/88 (15%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNT 59 M PAAR +A A+ L + + + QF + + D L+ V + Sbjct: 1 MTPAARIQA---AIDLLSEIEATPRPADALVSQFFRNRRYIGAKDRQGVAGLVYSVLRHR 57 Query: 60 AYLDGLMKPYLSRLLEELG--QVEKAVL 85 L L+ +A+L Sbjct: 58 GRL--------GWWLDRCNVMPTPRALL 77 >UniRef50_C5KW57 Putative uncharacterized protein (Fragment) n=3 Tax=Perkinsus marinus ATCC 50983 RepID=C5KW57_9ALVE Length = 294 Score = 41.9 bits (98), Expect = 0.007, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%) Query: 88 ALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 A +EL +P V INEA LAK F S V+ Sbjct: 2 AAFELLNHQHIPTTVVINEANSLAKEFC-PRSQTLVHA 38 >UniRef50_A5B766 Putative uncharacterized protein n=1 Tax=Vitis vinifera RepID=A5B766_VITVI Length = 360 Score = 41.9 bits (98), Expect = 0.007, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 42/127 (33%), Gaps = 39/127 (30%) Query: 45 VLYFRELLAGVAT----NTAYLDGLMKPYLSR-LLEELGQVEKAVLRIALYELSKRSDVP 99 + R+LL V + +D + P + +E +L +A+ E++ Sbjct: 221 RSFTRKLLVAVVDKWNSHVLVIDKVAPPNWKNEPAGRI--LELCILHLAMSEIAVL-GTR 277 Query: 100 YKVAINE-------------------------------AIELAKSFGAEDSHKFVNGVLD 128 +++ INE A++LAK F + + +NG L Sbjct: 278 HQIVINEVNSFSFSLSFSHDLPVKCISTSLTLIWLLMKAVDLAKRFCDGAAPRIINGCLR 337 Query: 129 KAAPVIR 135 + Sbjct: 338 TFVKDLE 344 >UniRef50_A4T0M4 Sun protein n=2 Tax=Polynucleobacter necessarius RepID=A4T0M4_POLSQ Length = 438 Score = 41.5 bits (97), Expect = 0.010, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 45/131 (34%), Gaps = 17/131 (12%) Query: 12 CAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLS 71 A QA+ +S + +V + + + + L L+K ++ Sbjct: 18 IAAQAISEV-MSGRSLTEVLDE------LDAHERPIVQSLTFDALRKWVRSHELIKQFVP 70 Query: 72 RLLEELGQVEKAVLRIALYELSKRSDVPY-----KVAINEAIELAKSFGAE-DSHKFVNG 125 + +L +A+ L R+D +++A+ + + VN Sbjct: 71 KTP---PPEVDHLLSVAIA-LFIRNDADDKGYAVHTVVDQAVRACGEYDQTLYAKGLVNA 126 Query: 126 VLDKAAPVIRP 136 VL K + ++P Sbjct: 127 VLRKVSLALQP 137 >UniRef50_Q8TGY3 tRNA/rRNA cytosine-C5-methylase n=1 Tax=Methanopyrus kandleri RepID=Q8TGY3_METKA Length = 450 Score = 39.6 bits (92), Expect = 0.029, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 3/95 (3%) Query: 11 ECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL 70 E ++ L + + + E + LL V LD +++ L Sbjct: 14 EIVLRTLVKAERIK-PTQYARRLVMKEMNPSREARSVSAGLLYSVLQKRGLLDEVIEDVL 72 Query: 71 S--RLLEELGQVEKAVLRIALYELSKRSDVPYKVA 103 + EL + RIA+ E+ P +VA Sbjct: 73 EITDDVTELDTWVRNAARIAVNEVVFEDGDPDEVA 107 >UniRef50_D0ME27 Fmu (Sun) domain protein n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0ME27_RHOM4 Length = 434 Score = 39.2 bits (91), Expect = 0.038, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 1/50 (2%) Query: 11 ECAVQALYSWQLSQNDIADVEYQF-LAEQDVKDVDVLYFRELLAGVATNT 59 E V L S V QF + + D + E + G+ + Sbjct: 16 EAVVTVLREILRSPLPADTVLQQFFRKHRKMGKRDRAFVAETVYGMLRHY 65 >UniRef50_Q5P4P8 tRNA and rRNA cytosine-C5-methylases sun n=8 Tax=Betaproteobacteria RepID=Q5P4P8_AZOSE Length = 447 Score = 38.8 bits (90), Expect = 0.052, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 6/118 (5%) Query: 17 LYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLE 75 L L ++ + + L D R+L G + D +++ L + Sbjct: 38 LVETVLGGANLTEAYERLLRANPGWPDATRGAVRDLAWGTLRDYGRGDVVLRRLLHKP-- 95 Query: 76 ELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPV 133 L A+L +AL+ L R D +++A++ A + A VNGVL K Sbjct: 96 -LPVALHALLLVALHRLEHRPD-QAHTVVDQAVDAA-AVLAPGLKGVVNGVLRKRLRD 150 >UniRef50_Q2T2A8 Sun protein n=76 Tax=Proteobacteria RepID=Q2T2A8_BURTA Length = 571 Score = 38.4 bits (89), Expect = 0.067, Method: Composition-based stats. Identities = 11/93 (11%), Positives = 27/93 (29%), Gaps = 7/93 (7%) Query: 45 VLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKV-- 102 +++ D L+ +++ A+L A L + Sbjct: 172 RGAIQDIAYRAMRRRGTADWLIAQLVAKAP---PAHVHALLVCAFALLVDDDEHAAYAPF 228 Query: 103 -AINEAI-ELAKSFGAEDSHKFVNGVLDKAAPV 133 +++A+ + + VN VL + Sbjct: 229 TVVDQAVTAIGARRECSFAKGLVNAVLRRFLRE 261 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_A4VHT5 N utilization substance protein B homolog n=23 T... 161 8e-39 UniRef50_A7ZIG9 N utilization substance protein B homolog n=118 ... 154 8e-37 UniRef50_A5D1B7 tRNA and rRNA cytosine-C5-methylases n=6 Tax=Clo... 154 1e-36 UniRef50_Q1IFL9 N utilization substance protein B homolog n=12 T... 153 2e-36 UniRef50_Q48DC2 N utilization substance protein B homolog n=51 T... 153 2e-36 UniRef50_C9R7W0 NusB antitermination factor n=1 Tax=Ammonifex de... 152 2e-36 UniRef50_A7VUU4 Putative uncharacterized protein n=1 Tax=Clostri... 152 3e-36 UniRef50_D1BMC4 Sun protein n=3 Tax=Veillonella RepID=D1BMC4_VEIPT 152 4e-36 UniRef50_C5BS84 N utilization substance protein B homolog n=2 Ta... 151 7e-36 UniRef50_A3DCX8 Sun protein n=5 Tax=Clostridium RepID=A3DCX8_CLOTH 150 1e-35 UniRef50_A8FD39 rRNA SAM-dependent methyltransferase RmsB n=3 Ta... 148 5e-35 UniRef50_Q0AD60 N utilization substance protein B homolog n=3 Ta... 147 1e-34 UniRef50_B3QZ49 Sun protein n=1 Tax=Chloroherpeton thalassium AT... 147 1e-34 UniRef50_A3DDP0 N utilization substance protein B homolog n=5 Ta... 146 2e-34 UniRef50_Q2YD50 N utilization substance protein B homolog n=4 Ta... 146 2e-34 UniRef50_A5D319 N utilization substance protein B homolog n=3 Ta... 146 2e-34 UniRef50_A1W9I4 N utilization substance protein B homolog n=6 Ta... 146 2e-34 UniRef50_C6D4F5 Sun protein n=87 Tax=Bacilli RepID=C6D4F5_PAESJ 146 3e-34 UniRef50_B6IZ82 N utilization substance protein B homolog n=6 Ta... 145 3e-34 UniRef50_Q2RK22 Sun protein n=3 Tax=Clostridia RepID=Q2RK22_MOOTA 145 4e-34 UniRef50_Q31FT2 N utilization substance protein B homolog n=1 Ta... 145 4e-34 UniRef50_D2RNU3 Sun protein n=3 Tax=Veillonellaceae RepID=D2RNU3... 145 4e-34 UniRef50_C4ZEV6 Sun protein n=4 Tax=Clostridiales RepID=C4ZEV6_E... 145 5e-34 UniRef50_Q493G9 N utilization substance protein B homolog n=3 Ta... 145 5e-34 UniRef50_C7HWX1 NusB antitermination factor n=1 Tax=Thiomonas in... 145 5e-34 UniRef50_B0MGA0 Putative uncharacterized protein n=2 Tax=Clostri... 145 5e-34 UniRef50_A7C6S2 Transcription antitermination protein NusB n=1 T... 145 5e-34 UniRef50_B0A9Y2 Putative uncharacterized protein n=2 Tax=Clostri... 144 7e-34 UniRef50_Q0K7T8 N utilization substance protein B homolog n=70 T... 144 7e-34 UniRef50_B3DWQ3 N utilization substance protein B homolog n=1 Ta... 143 2e-33 UniRef50_A0Q113 Sun protein n=35 Tax=Clostridium RepID=A0Q113_CLONN 143 2e-33 UniRef50_A8FF16 N utilization substance protein B homolog n=28 T... 142 3e-33 UniRef50_A8MH88 Sun protein n=7 Tax=Clostridiaceae RepID=A8MH88_... 142 3e-33 UniRef50_Q21F20 N utilization substance protein B homolog n=5 Ta... 142 4e-33 UniRef50_A9BVN7 N utilization substance protein B homolog n=7 Ta... 142 4e-33 UniRef50_B0TEI6 N utilization substance protein B homolog n=1 Ta... 142 4e-33 UniRef50_C5TIT6 Transcription antitermination factor NusB n=5 Ta... 141 5e-33 UniRef50_UPI0001C36EDB sun protein n=1 Tax=Ruminococcus flavefac... 141 6e-33 UniRef50_B9L0C6 Transcription antitermination factor NusB n=2 Ta... 141 7e-33 UniRef50_B3EF03 Sun protein n=11 Tax=Chlorobiaceae RepID=B3EF03_... 141 7e-33 UniRef50_C8W0Z5 NusB antitermination factor n=1 Tax=Desulfotomac... 140 9e-33 UniRef50_C0EFK3 Putative uncharacterized protein n=1 Tax=Clostri... 140 1e-32 UniRef50_C4KD91 NusB antitermination factor n=1 Tax=Thauera sp. ... 140 1e-32 UniRef50_Q3JCY0 N utilization substance protein B homolog n=2 Ta... 140 1e-32 UniRef50_D2LH50 NusB antitermination factor n=1 Tax=Rhodomicrobi... 140 1e-32 UniRef50_A6NUS8 Putative uncharacterized protein n=1 Tax=Bactero... 140 1e-32 UniRef50_D0L1W4 NusB antitermination factor n=1 Tax=Halothiobaci... 140 1e-32 UniRef50_C6X9V7 NusB antitermination factor n=1 Tax=Methylovorus... 140 1e-32 UniRef50_UPI0001C335A0 ribosomal RNA small subunit methyltransfe... 140 1e-32 UniRef50_B1YIQ1 Sun protein n=2 Tax=Exiguobacterium RepID=B1YIQ1... 140 2e-32 UniRef50_C0N8C8 Transcription antitermination factor NusB n=1 Ta... 140 2e-32 UniRef50_Q67NA9 N utilization substance protein B homolog n=2 Ta... 140 2e-32 UniRef50_B8FJ78 N utilization substance protein B homolog n=2 Ta... 140 2e-32 UniRef50_B0UU23 N utilization substance protein B homolog n=33 T... 140 2e-32 UniRef50_Q1PUX1 Putative uncharacterized protein n=1 Tax=Candida... 140 2e-32 UniRef50_Q479L3 N utilization substance protein B homolog n=3 Ta... 140 2e-32 UniRef50_Q5X720 N utilization substance protein B homolog n=6 Ta... 139 2e-32 UniRef50_B3U4H5 Transcription antitermination protein n=1 Tax=Ca... 139 2e-32 UniRef50_B8D9P0 N utilization substance protein B homolog n=5 Ta... 139 2e-32 UniRef50_Q2BM00 NusB protein n=1 Tax=Neptuniibacter caesariensis... 139 2e-32 UniRef50_P94464 Ribosomal RNA small subunit methyltransferase B ... 139 2e-32 UniRef50_A8PLC7 Transcription antitermination factor NusB n=1 Ta... 139 3e-32 UniRef50_A0LEK0 Sun protein n=1 Tax=Syntrophobacter fumaroxidans... 139 3e-32 UniRef50_P72943 Ribosomal RNA small subunit methyltransferase B ... 139 3e-32 UniRef50_B0S1M1 N utilization substance protein B homolog n=2 Ta... 139 3e-32 UniRef50_C0WD86 SUN protein n=1 Tax=Acidaminococcus sp. D21 RepI... 139 3e-32 UniRef50_C6WU13 NusB antitermination factor n=1 Tax=Methylotener... 138 4e-32 UniRef50_A8RWU3 Putative uncharacterized protein n=4 Tax=Clostri... 138 4e-32 UniRef50_B1HQE5 Ribosomal RNA small subunit methyltransferase B ... 138 4e-32 UniRef50_C4FT85 Putative uncharacterized protein n=1 Tax=Catonel... 138 4e-32 UniRef50_C0GMV1 NusB antitermination factor n=1 Tax=Desulfonatro... 138 5e-32 UniRef50_C5EIZ3 Putative uncharacterized protein n=2 Tax=Clostri... 138 5e-32 UniRef50_A5FQ51 N utilization substance protein B homolog n=5 Ta... 138 5e-32 UniRef50_B8FQ61 N utilization substance protein B homolog n=2 Ta... 138 7e-32 UniRef50_Q1N2N9 Transcription antitermination protein NusB n=1 T... 138 7e-32 UniRef50_C8WW78 Sun protein n=2 Tax=Alicyclobacillus acidocaldar... 138 7e-32 UniRef50_Q2RIA9 N utilization substance protein B homolog n=1 Ta... 137 9e-32 UniRef50_A0L3Z8 NusB antitermination factor n=1 Tax=Magnetococcu... 137 1e-31 UniRef50_Q1ISD3 N utilization substance protein B homolog n=2 Ta... 137 2e-31 UniRef50_D0BMY2 Ribosomal RNA small subunit methyltransferase B ... 136 2e-31 UniRef50_C1DB31 N utilization substance protein B homolog n=3 Ta... 136 2e-31 UniRef50_B9M341 Sun protein n=4 Tax=Geobacter RepID=B9M341_GEOSF 136 2e-31 UniRef50_C6PE58 NusB/RsmB/TIM44 protein n=1 Tax=Thermoanaerobact... 136 2e-31 UniRef50_B2A2K5 Sun protein n=1 Tax=Natranaerobius thermophilus ... 136 3e-31 UniRef50_C9RZP8 Sun protein n=5 Tax=Bacillales RepID=C9RZP8_GEOSY 136 3e-31 UniRef50_A5F5Z6 N utilization substance protein B homolog n=91 T... 135 3e-31 UniRef50_C4L3F7 N utilization substance protein B homolog n=2 Ta... 135 3e-31 UniRef50_C8WLN1 NusB antitermination factor n=2 Tax=Coriobacteri... 135 4e-31 UniRef50_UPI00006A2BCA UPI00006A2BCA related cluster n=1 Tax=Xen... 135 4e-31 UniRef50_C0GE32 NusB antitermination factor n=1 Tax=Dethiobacter... 135 4e-31 UniRef50_B8FHH2 Sun protein n=1 Tax=Desulfatibacillum alkenivora... 135 4e-31 UniRef50_B3QV72 N utilization substance protein B homolog n=1 Ta... 135 4e-31 UniRef50_A0Q099 N utilization substance protein B homolog n=3 Ta... 135 4e-31 UniRef50_C0GIQ4 Sun protein n=1 Tax=Dethiobacter alkaliphilus AH... 135 4e-31 UniRef50_C7LSH4 NusB antitermination factor n=1 Tax=Desulfomicro... 135 4e-31 UniRef50_C9LLK5 Ribosomal RNA small subunit methyltransferase B ... 135 4e-31 UniRef50_B8CWT0 Sun protein n=1 Tax=Halothermothrix orenii H 168... 135 5e-31 UniRef50_Q0AZF7 N utilization substance protein B homolog n=1 Ta... 135 5e-31 UniRef50_A6W2L6 N utilization substance protein B homolog n=4 Ta... 135 5e-31 UniRef50_A8ZTU6 N utilization substance protein B homolog n=1 Ta... 135 6e-31 UniRef50_Q1H424 N utilization substance protein B homolog n=2 Ta... 134 6e-31 UniRef50_A6Q4Q9 N utilization substance protein B homolog n=20 T... 134 7e-31 UniRef50_C0EY63 Putative uncharacterized protein n=1 Tax=Eubacte... 134 8e-31 UniRef50_D1VSJ6 Transcription antitermination factor NusB n=1 Ta... 134 8e-31 UniRef50_Q3BXH9 N utilization substance protein B homolog n=20 T... 133 1e-30 UniRef50_B7KB91 Sun protein n=19 Tax=Cyanobacteria RepID=B7KB91_... 133 1e-30 UniRef50_Q30YL1 N utilization substance protein B homolog n=5 Ta... 133 1e-30 UniRef50_Q1D350 N utilization substance protein B homolog n=2 Ta... 133 1e-30 UniRef50_C0W1K3 16S rRNA m(5)C 967 methyltransferase n=1 Tax=Act... 133 1e-30 UniRef50_Q3A4L2 N utilization substance protein B homolog n=2 Ta... 133 2e-30 UniRef50_B5ELV9 NusB antitermination factor n=3 Tax=Acidithiobac... 133 2e-30 UniRef50_UPI00016C01E8 sun protein n=1 Tax=Epulopiscium sp. 'N.t... 133 2e-30 UniRef50_C5CI90 NusB antitermination factor n=1 Tax=Kosmotoga ol... 133 2e-30 UniRef50_B0K9D9 N utilization substance protein B homolog n=10 T... 132 3e-30 UniRef50_UPI00016C38F9 Fmu, rRNA SAM-dependent methyltransferase... 132 3e-30 UniRef50_D1CCN3 NusB antitermination factor n=1 Tax=Thermobaculu... 132 3e-30 UniRef50_C6R1D5 Ribosomal RNA small subunit methyltransferase B ... 132 3e-30 UniRef50_B5JUN2 Transcription antitermination factor NusB n=1 Ta... 132 4e-30 UniRef50_A9KM96 Sun protein n=1 Tax=Clostridium phytofermentans ... 132 4e-30 UniRef50_B2IXU2 Sun protein n=1 Tax=Nostoc punctiforme PCC 73102... 132 5e-30 UniRef50_Q136T4 N utilization substance protein B homolog n=36 T... 132 5e-30 UniRef50_C4V0R0 rRNA SAM-dependent methyltransferase RmsB n=1 Ta... 132 5e-30 UniRef50_Q3A7Z0 Sun protein n=2 Tax=Desulfuromonadales RepID=Q3A... 132 5e-30 UniRef50_Q5F9Y0 N utilization substance protein B homolog n=22 T... 132 5e-30 UniRef50_A8ZUK3 Sun protein n=1 Tax=Desulfococcus oleovorans Hxd... 132 5e-30 UniRef50_A8LE23 Fmu (Sun) domain protein n=3 Tax=Frankia RepID=A... 132 5e-30 UniRef50_D2L8L5 NusB antitermination factor n=1 Tax=Desulfovibri... 131 6e-30 UniRef50_A6CAX2 Transcription antitermination protein NusB n=1 T... 131 6e-30 UniRef50_Q0AXL7 Putative uncharacterized protein n=1 Tax=Syntrop... 131 6e-30 UniRef50_Q2JK83 Ribosomal RNA small subunit methyltransferase B ... 131 7e-30 UniRef50_B2S4Q2 N utilization substance protein B homolog n=3 Ta... 131 7e-30 UniRef50_Q5WF59 N utilization substance protein B homolog n=2 Ta... 131 8e-30 UniRef50_UPI0001C42A93 transcription antitermination protein Nus... 131 8e-30 UniRef50_D2NSI1 tRNA and rRNA cytosine-C5-methylase n=2 Tax=Micr... 131 8e-30 UniRef50_C9L6W4 Ribosomal RNA small subunit methyltransferase B ... 131 8e-30 UniRef50_B0KA07 Sun protein n=11 Tax=Thermoanaerobacterales RepI... 131 9e-30 UniRef50_B1H071 Transcription antitermination factor NusB n=1 Ta... 131 9e-30 UniRef50_C6CU26 NusB antitermination factor n=3 Tax=Bacillales R... 130 1e-29 UniRef50_A9ET18 N utilization substance protein B homolog n=1 Ta... 130 1e-29 UniRef50_B0MPP7 Putative uncharacterized protein n=1 Tax=Eubacte... 130 1e-29 UniRef50_B1LAQ8 N utilization substance protein B homolog n=10 T... 130 1e-29 UniRef50_Q6AP93 N utilization substance protein B homolog n=1 Ta... 130 1e-29 UniRef50_B3QJK9 N utilization substance protein B homolog n=9 Ta... 130 1e-29 UniRef50_D0LLT9 Sun protein n=1 Tax=Haliangium ochraceum DSM 143... 130 1e-29 UniRef50_C5S6Y6 NusB antitermination factor n=1 Tax=Allochromati... 130 1e-29 UniRef50_B5GBK3 RNA-binding Sun protein n=1 Tax=Streptomyces sp.... 130 2e-29 UniRef50_B9L730 Transcription antitermination factor NusB n=2 Ta... 130 2e-29 UniRef50_Q5P3H4 N utilization substance protein B homolog n=9 Ta... 130 2e-29 UniRef50_C8PMR7 Transcription antitermination factor NusB n=1 Ta... 130 2e-29 UniRef50_A0LI21 N utilization substance protein B homolog n=4 Ta... 130 2e-29 UniRef50_B4SCZ7 N utilization substance protein B homolog n=2 Ta... 129 2e-29 UniRef50_Q7A601 SA1060 protein n=63 Tax=Staphylococcaceae RepID=... 129 2e-29 UniRef50_Q2YYB7 N utilization substance protein B homolog n=59 T... 129 3e-29 UniRef50_B4D6X5 NusB antitermination factor n=1 Tax=Chthoniobact... 129 3e-29 UniRef50_B4WR53 Ribosomal RNA small subunit methyltransferase B ... 129 3e-29 UniRef50_B7IXH3 N utilization substance protein B homolog n=82 T... 129 3e-29 UniRef50_A5KNU7 Putative uncharacterized protein n=4 Tax=Clostri... 129 3e-29 UniRef50_B1W456 N utilization substance protein B homolog n=7 Ta... 128 4e-29 UniRef50_D2B6M0 Fmu, rRNA SAM-dependent methyltransferase:Nop2p ... 128 4e-29 UniRef50_Q2LRX5 16S rRNA m(5)C 967 methyltransferase n=1 Tax=Syn... 128 5e-29 UniRef50_B9LDT2 N utilization substance protein B homolog n=6 Ta... 128 5e-29 UniRef50_UPI0001745093 NusB antitermination factor n=1 Tax=Verru... 128 5e-29 UniRef50_C1QBG1 Transcription antitermination factor NusB n=1 Ta... 128 5e-29 UniRef50_C7MCY2 tRNA/rRNA cytosine-C5-methylase n=2 Tax=Micrococ... 128 5e-29 UniRef50_B2KE32 N utilization substance protein B homolog n=1 Ta... 128 7e-29 UniRef50_Q0TPD3 N utilization substance protein B homolog n=10 T... 128 7e-29 UniRef50_C1ZLP1 Ribosomal RNA small subunit methyltransferase Rs... 128 7e-29 UniRef50_A1WVG0 N utilization substance protein B homolog n=1 Ta... 128 7e-29 UniRef50_Q2LQK4 N utilization substance protein B homolog n=1 Ta... 127 9e-29 UniRef50_Q3ATI5 N utilization substance protein B homolog n=9 Ta... 127 9e-29 UniRef50_B8DJF1 N utilization substance protein B homolog n=2 Ta... 127 1e-28 UniRef50_D0WMY6 Ribosomal RNA small subunit methyltransferase B ... 127 1e-28 UniRef50_D1U9R7 NusB antitermination factor n=1 Tax=Desulfovibri... 127 1e-28 UniRef50_B8DTW1 N utilization substance protein B homolog n=16 T... 127 1e-28 UniRef50_C0ZC03 N utilization substance protein B n=1 Tax=Brevib... 127 1e-28 UniRef50_UPI0001B583AE RNA-binding Sun protein n=2 Tax=Actinomyc... 127 2e-28 UniRef50_C0R001 Transcription antitermination protein NusB n=1 T... 127 2e-28 UniRef50_Q1MS16 N utilization substance protein B homolog n=1 Ta... 127 2e-28 UniRef50_UPI0001BC34B4 sun protein n=1 Tax=Butyrivibrio crossotu... 127 2e-28 UniRef50_B6WQ80 Putative uncharacterized protein n=1 Tax=Desulfo... 127 2e-28 UniRef50_B0PFT6 Putative uncharacterized protein n=1 Tax=Anaerot... 127 2e-28 UniRef50_Q1AW09 N utilization substance protein B homolog n=1 Ta... 127 2e-28 UniRef50_C5NYN0 Ribosomal RNA small subunit methyltransferase B ... 126 2e-28 UniRef50_C7N4M1 Transcription antitermination factor NusB n=1 Ta... 126 2e-28 UniRef50_A5G3J8 N utilization substance protein B homolog n=7 Ta... 126 2e-28 UniRef50_A8SLL0 Putative uncharacterized protein n=1 Tax=Parvimo... 126 2e-28 UniRef50_Q1IIS1 Sun protein n=1 Tax=Candidatus Koribacter versat... 126 2e-28 UniRef50_Q6MNX9 N utilization substance protein B homolog n=1 Ta... 126 3e-28 UniRef50_A8ST69 Putative uncharacterized protein n=2 Tax=Clostri... 126 3e-28 UniRef50_B7DR17 NusB antitermination factor n=1 Tax=Alicyclobaci... 126 3e-28 UniRef50_A5VKQ4 Sun protein n=14 Tax=Lactobacillus RepID=A5VKQ4_... 125 3e-28 UniRef50_A8SLT0 Putative uncharacterized protein n=1 Tax=Parvimo... 125 3e-28 UniRef50_A7BCC1 Putative uncharacterized protein n=1 Tax=Actinom... 125 3e-28 UniRef50_Q31J86 Ribosomal RNA small subunit methyltransferase B ... 125 4e-28 UniRef50_D0MK26 NusB antitermination factor n=1 Tax=Rhodothermus... 125 4e-28 UniRef50_B3DQ30 N utilization substance protein B homolog n=7 Ta... 125 4e-28 UniRef50_C2BWI2 Ribosomal RNA small subunit methyltransferase B ... 125 5e-28 UniRef50_A4TBX3 N utilization substance protein B homolog n=18 T... 125 5e-28 UniRef50_A8VXB3 Acetyl-CoA carboxylase, biotin carboxyl carrier ... 125 6e-28 UniRef50_C8W9W3 NusB antitermination factor n=1 Tax=Atopobium pa... 125 6e-28 UniRef50_B9XT31 Sun protein n=1 Tax=bacterium Ellin514 RepID=B9X... 125 6e-28 UniRef50_C4DPH0 tRNA/rRNA cytosine-C5-methylase n=1 Tax=Stackebr... 125 6e-28 UniRef50_UPI0000E87F00 transcription antitermination protein Nus... 124 8e-28 UniRef50_Q983A9 N utilization substance protein B homolog n=3 Ta... 124 8e-28 UniRef50_C8WZ45 NusB/RsmB/TIM44 n=1 Tax=Desulfohalobium retbaens... 124 9e-28 UniRef50_Q1NRI6 NusB antitermination factor n=1 Tax=delta proteo... 124 9e-28 UniRef50_B7APZ1 Putative uncharacterized protein n=1 Tax=Bactero... 124 9e-28 UniRef50_B8ZUK7 N utilization substance protein B homolog n=16 T... 124 1e-27 UniRef50_UPI00016C04B6 transcription termination factor n=1 Tax=... 124 1e-27 UniRef50_B2A534 N utilization substance protein B homolog n=1 Ta... 124 1e-27 UniRef50_Q6AS22 Related to SUN protein (FMU protein) n=1 Tax=Des... 123 1e-27 UniRef50_C4XHY8 N utilization substance protein B homolog n=1 Ta... 123 1e-27 UniRef50_Q3AAM1 N utilization substance protein B homolog n=1 Ta... 123 1e-27 UniRef50_Q03RR0 N utilization substance protein B homolog n=23 T... 123 1e-27 UniRef50_C3RII4 SUN protein n=10 Tax=Bacteria RepID=C3RII4_9MOLU 123 1e-27 UniRef50_Q2S6K8 N utilization substance protein B homolog n=1 Ta... 123 1e-27 UniRef50_A4U1B3 Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p:Antite... 123 1e-27 UniRef50_C6BYC6 NusB antitermination factor n=1 Tax=Desulfovibri... 123 1e-27 UniRef50_C5CBJ2 Ribosomal RNA small subunit methyltransferase Rs... 123 2e-27 UniRef50_Q022D6 NusB/RsmB/TIM44 n=1 Tax=Candidatus Solibacter us... 123 2e-27 UniRef50_A7VX44 Putative uncharacterized protein n=1 Tax=Clostri... 123 2e-27 UniRef50_A7HDY2 N utilization substance protein B homolog n=4 Ta... 123 2e-27 UniRef50_B5YE05 N utilization substance protein B homolog n=2 Ta... 123 2e-27 UniRef50_B6GCG9 Putative uncharacterized protein n=2 Tax=Collins... 123 2e-27 UniRef50_B9E6Q9 N utilization substance protein B homolog n=6 Ta... 123 2e-27 UniRef50_B0PBD5 Putative uncharacterized protein n=1 Tax=Anaerot... 122 3e-27 UniRef50_A4XL79 Sun protein n=2 Tax=Clostridia RepID=A4XL79_CALS8 122 3e-27 UniRef50_B0MQ18 Putative uncharacterized protein n=1 Tax=Eubacte... 122 3e-27 UniRef50_B3WEW8 RRNA methylase (Putative) n=77 Tax=Bacilli RepID... 122 3e-27 UniRef50_A8MFJ3 N utilization substance protein B homolog n=2 Ta... 122 3e-27 UniRef50_B8H535 N utilization substance protein B homolog n=4 Ta... 122 4e-27 UniRef50_A6NUZ5 Putative uncharacterized protein n=1 Tax=Bactero... 122 4e-27 UniRef50_A4W3P3 Transcription termination factor n=6 Tax=Strepto... 122 4e-27 UniRef50_Q5FNA1 N utilization substance protein B homolog n=1 Ta... 122 4e-27 UniRef50_A3TLN6 Putative RNA-binding Sun protein n=2 Tax=Actinob... 122 4e-27 UniRef50_C9KK33 Transcription antitermination factor NusB n=1 Ta... 122 4e-27 UniRef50_C6MTY9 Sun protein n=1 Tax=Geobacter sp. M18 RepID=C6MT... 122 4e-27 UniRef50_C4G2S0 Putative uncharacterized protein n=1 Tax=Abiotro... 122 4e-27 UniRef50_C7H0C2 Transcription antitermination factor NusB n=1 Ta... 122 4e-27 UniRef50_D1B3U2 Transcription antitermination factor NusB n=3 Ta... 122 5e-27 UniRef50_B9XNZ3 NusB antitermination factor n=1 Tax=bacterium El... 122 5e-27 UniRef50_C7Q4P0 Fmu (Sun) domain protein n=1 Tax=Catenulispora a... 122 5e-27 UniRef50_D2B6P7 Transcription antitermination factor NusB n=3 Ta... 122 5e-27 UniRef50_C8WXH1 NusB antitermination factor n=1 Tax=Alicyclobaci... 122 5e-27 UniRef50_B5FCW8 Ribosomal RNA small subunit methyltransferase B ... 122 5e-27 UniRef50_C4ZCZ0 N utilization substance protein B homolog n=5 Ta... 121 6e-27 UniRef50_P71675 Putative methyltransferase Rv1407/MT1451 n=56 Ta... 121 6e-27 UniRef50_A0JX79 N utilization substance protein B homolog n=3 Ta... 121 6e-27 UniRef50_C4V2M6 Transcription antitermination protein NusB n=1 T... 121 7e-27 UniRef50_Q03FY2 tRNA and rRNA cytosine-C5-methylase n=2 Tax=Pedi... 121 7e-27 UniRef50_C4FTS3 Putative uncharacterized protein n=1 Tax=Catonel... 121 8e-27 UniRef50_D2RJI2 NusB antitermination factor n=2 Tax=Acidaminococ... 121 9e-27 UniRef50_B8FS79 Sun protein n=2 Tax=Desulfitobacterium hafniense... 120 1e-26 UniRef50_Q0ABQ3 N utilization substance protein B homolog n=2 Ta... 120 1e-26 UniRef50_Q2SQX3 Sun protein n=1 Tax=Hahella chejuensis KCTC 2396... 120 1e-26 UniRef50_A5GRG8 Ribosomal RNA small subunit methyltransferase B ... 120 1e-26 UniRef50_A4XLC1 N utilization substance protein B homolog n=2 Ta... 120 1e-26 UniRef50_C4XT41 rRNA (Cytosine-C(5)-)-methyltransferase n=1 Tax=... 120 2e-26 UniRef50_Q1Q7P9 Putative uncharacterized protein n=1 Tax=Candida... 120 2e-26 UniRef50_Q4JVG6 N utilization substance protein B homolog n=5 Ta... 120 2e-26 UniRef50_C1I679 NusB antitermination factor n=1 Tax=Clostridium ... 120 2e-26 UniRef50_A6LU43 N utilization substance protein B homolog n=6 Ta... 119 2e-26 UniRef50_D1PM68 Ribosomal RNA small subunit methyltransferase B ... 119 2e-26 UniRef50_B0NZC1 Putative uncharacterized protein n=2 Tax=Clostri... 119 2e-26 UniRef50_B0REX0 N utilization substance protein B homolog n=4 Ta... 119 2e-26 UniRef50_A5EVR1 Transcription antitermination factor NusB n=2 Ta... 119 2e-26 UniRef50_Q3AC21 Sun protein n=1 Tax=Carboxydothermus hydrogenofo... 119 3e-26 UniRef50_B5YHQ2 N utilization substance protein B homolog n=1 Ta... 119 3e-26 UniRef50_C8WEQ4 NusB antitermination factor n=4 Tax=Zymomonas mo... 119 3e-26 UniRef50_B1C5S4 Putative uncharacterized protein n=1 Tax=Anaerof... 119 3e-26 UniRef50_Q7USA9 N utilization substance protein B homolog n=2 Ta... 119 3e-26 UniRef50_C9LUP3 Transcription antitermination factor NusB n=2 Ta... 119 3e-26 UniRef50_C9RN69 NusB antitermination factor n=1 Tax=Fibrobacter ... 119 3e-26 UniRef50_C2D814 Putative uncharacterized protein n=1 Tax=Atopobi... 119 3e-26 UniRef50_D1U6T4 NusB/RsmB/TIM44 n=1 Tax=Desulfovibrio aespoeensi... 119 3e-26 UniRef50_D0WFZ4 Transcription antitermination factor NusB n=1 Ta... 119 4e-26 UniRef50_Q47QY5 N utilization substance protein B homolog n=21 T... 118 4e-26 UniRef50_C5VC90 Transcription antitermination factor NusB n=2 Ta... 118 4e-26 UniRef50_D1KDZ6 Transcription termination factor n=1 Tax=uncultu... 118 5e-26 UniRef50_C0AZZ3 Putative uncharacterized protein n=1 Tax=Proteus... 118 5e-26 UniRef50_A0LUG6 N utilization substance protein B homolog n=2 Ta... 118 5e-26 UniRef50_C3XMJ2 Transcription termination protein n=1 Tax=Helico... 118 5e-26 UniRef50_C8PUW0 NusB antitermination factor n=1 Tax=Enhydrobacte... 118 5e-26 UniRef50_A7HX88 NusB antitermination factor n=1 Tax=Parvibaculum... 118 5e-26 UniRef50_A6BZY6 Sun protein n=1 Tax=Planctomyces maris DSM 8797 ... 118 5e-26 UniRef50_D0LW51 NusB antitermination factor n=1 Tax=Haliangium o... 118 6e-26 UniRef50_D1N6Z8 NusB antitermination factor n=1 Tax=Victivallis ... 118 6e-26 UniRef50_Q1NQ57 Fmu, rRNA SAM-dependent methyltransferase n=2 Ta... 118 7e-26 UniRef50_Q836W8 N utilization substance protein B homolog n=39 T... 118 7e-26 UniRef50_C0W3L2 rRNA (Cytosine-C(5)-)-methyltransferase n=1 Tax=... 118 8e-26 UniRef50_B9K874 Sun protein n=6 Tax=Thermotogaceae RepID=B9K874_... 117 8e-26 UniRef50_B0VHI6 Putative 16S rRNA m5C967 methyltransferase, S-ad... 117 9e-26 UniRef50_C2GHU0 16S rRNA M(5)C 967 methyltransferase n=1 Tax=Cor... 117 9e-26 UniRef50_C8R080 Sun protein n=1 Tax=Desulfurivibrio alkaliphilus... 117 1e-25 UniRef50_Q0F2C5 Transcription antitermination protein NusB n=1 T... 117 1e-25 UniRef50_B2VK95 Ribosomal RNA small subunit methyltransferase B ... 117 1e-25 UniRef50_Q317Q8 Sun protein n=1 Tax=Desulfovibrio desulfuricans ... 117 1e-25 UniRef50_Q12TA7 Sun protein n=8 Tax=Gammaproteobacteria RepID=Q1... 117 1e-25 UniRef50_B0CL95 N utilization substance protein B homolog n=42 T... 117 1e-25 UniRef50_Q03FZ6 N utilization substance protein B homolog n=1 Ta... 117 1e-25 UniRef50_D2EIA0 Transcription antitermination factor NusB n=1 Ta... 117 2e-25 UniRef50_Q38XV0 N utilization substance protein B homolog n=9 Ta... 117 2e-25 UniRef50_Q5HW85 N utilization substance protein B homolog n=24 T... 116 2e-25 UniRef50_B0SB76 N utilization substance protein B homolog n=6 Ta... 116 2e-25 UniRef50_B1ZVQ6 NusB antitermination factor n=3 Tax=Verrucomicro... 116 3e-25 UniRef50_C4DFR3 Transcription antitermination factor NusB n=1 Ta... 116 3e-25 UniRef50_B9CP02 Transcription antitermination factor NusB n=1 Ta... 116 3e-25 UniRef50_B0VJ63 N utilization substance protein B n=1 Tax=Candid... 116 3e-25 UniRef50_UPI00019779AE transcription antitermination protein Nus... 115 3e-25 UniRef50_UPI0001BC2C1E Fmu (Sun) domain protein n=1 Tax=Brevibac... 115 3e-25 UniRef50_Q6A8H0 TRNA/rRNA cytosine-C5-methylase n=3 Tax=Propioni... 115 4e-25 UniRef50_A5ZPE1 Putative uncharacterized protein n=4 Tax=Clostri... 115 4e-25 UniRef50_Q2WB24 tRNA and rRNA cytosine-C5-methylase n=3 Tax=Alph... 115 4e-25 UniRef50_C5RAE2 RNA methyltransferase n=3 Tax=Lactobacillales Re... 115 5e-25 UniRef50_Q1JF82 N utilization substance protein B homolog n=57 T... 115 5e-25 UniRef50_C6XRR6 Fmu (Sun) domain protein n=1 Tax=Hirschia baltic... 115 5e-25 UniRef50_C5WIG1 16S rRNA m(5)C 967 methyltransferase n=44 Tax=St... 115 6e-25 UniRef50_C1F543 Putative ribosomal RNA small subunit methyltrans... 115 6e-25 UniRef50_Q6A8H8 N utilization substance protein B homolog n=2 Ta... 115 6e-25 UniRef50_Q0APG4 N utilization substance protein B homolog n=3 Ta... 115 6e-25 UniRef50_B6IMS4 Transcription antitermination protein NusB, puta... 114 8e-25 UniRef50_Q6NH08 N utilization substance protein B homolog n=1 Ta... 114 8e-25 UniRef50_C1XPK4 NusB antitermination factor n=2 Tax=Meiothermus ... 114 8e-25 UniRef50_Q1DCG5 Ribosomal RNA small subunit methyltransferase B ... 114 9e-25 UniRef50_A8G3E0 Sun protein (Fmu protein) n=7 Tax=Prochlorococcu... 114 1e-24 UniRef50_A3EVA3 Transcription antitermination factor (NusB) n=2 ... 114 1e-24 UniRef50_C7H5H8 Ribosomal RNA small subunit methyltransferase B ... 114 1e-24 UniRef50_C0VVW4 Transcription antitermination protein NusB n=2 T... 114 1e-24 UniRef50_B4CZF1 Sun protein n=1 Tax=Chthoniobacter flavus Ellin4... 114 1e-24 UniRef50_Q8DSE9 N utilization substance protein B homolog n=5 Ta... 113 1e-24 UniRef50_A8YVW1 rRNA methylase n=27 Tax=Lactobacillus RepID=A8YV... 113 2e-24 UniRef50_Q03W17 tRNA and rRNA cytosine-C5-methylase n=11 Tax=Lac... 113 2e-24 UniRef50_Q8EKR0 Ribosomal RNA small subunit methyltransferase B ... 113 2e-24 UniRef50_C5RKK7 NusB antitermination factor n=1 Tax=Clostridium ... 113 2e-24 UniRef50_Q2BQD6 Fmu, rRNA SAM-dependent methyltransferase n=1 Ta... 113 2e-24 UniRef50_A5CWS4 N utilization substance protein B n=2 Tax=sulfur... 113 2e-24 UniRef50_C6QHP1 NusB antitermination factor n=1 Tax=Hyphomicrobi... 113 2e-24 UniRef50_A6DTV7 NusB antitermination factor n=1 Tax=Lentisphaera... 113 2e-24 UniRef50_B9E100 N utilization substance protein B homolog n=14 T... 113 2e-24 UniRef50_C6XHS5 Transcription antitermination protein NusB n=1 T... 113 3e-24 UniRef50_Q057F3 N utilization substance protein B homolog n=1 Ta... 112 3e-24 UniRef50_C0EFY5 Putative uncharacterized protein n=1 Tax=Clostri... 112 3e-24 UniRef50_Q2W4S5 N utilization substance protein B homolog n=3 Ta... 112 3e-24 UniRef50_C9LLB0 Transcription antitermination factor NusB n=1 Ta... 112 4e-24 UniRef50_C5NYK7 Transcription antitermination factor NusB n=1 Ta... 111 4e-24 UniRef50_D1VSE3 Ribosomal RNA small subunit methyltransferase B ... 111 5e-24 UniRef50_C6BVK4 NusB/RsmB/TIM44 n=1 Tax=Desulfovibrio salexigens... 111 5e-24 UniRef50_D2R650 NusB antitermination factor n=2 Tax=Planctomycet... 111 6e-24 UniRef50_C1A605 Putative rRNA methyltransferase n=1 Tax=Gemmatim... 111 7e-24 UniRef50_O66530 N utilization substance protein B homolog n=3 Ta... 111 7e-24 UniRef50_B1C650 Putative uncharacterized protein n=1 Tax=Anaerof... 111 8e-24 UniRef50_A1V9B6 NusB/RsmB/TIM44 n=3 Tax=Desulfovibrio vulgaris R... 111 8e-24 UniRef50_C0GN53 NusB/RsmB/TIM44 n=1 Tax=Desulfonatronospira thio... 111 8e-24 UniRef50_C0VVY3 Possible rRNA SAM-dependent methyltransferase Rm... 111 9e-24 UniRef50_C2KVE0 Possible rRNA (Cytosine-5-)-methyltransferase n=... 110 1e-23 UniRef50_A3UCC3 Transcription antitermination protein NusB n=1 T... 110 1e-23 UniRef50_C7GZX3 16S rRNA M(5)C 967 methyltransferase n=1 Tax=Eub... 110 1e-23 UniRef50_C0XM65 rRNA SAM-dependent methyltransferase RmsB n=3 Ta... 110 1e-23 UniRef50_UPI0001C3796F transcription termination factor n=1 Tax=... 110 1e-23 UniRef50_B5YF43 Ribosomal RNA small subunit methyltransferase B ... 110 1e-23 UniRef50_A9KMC2 N utilization substance protein B homolog n=17 T... 110 1e-23 UniRef50_A6VR79 Sun protein n=2 Tax=Marinomonas RepID=A6VR79_MARMS 110 1e-23 UniRef50_Q0BTF1 N utilization substance protein B homolog n=11 T... 110 1e-23 UniRef50_D2L7S0 NusB/RsmB/TIM44 n=1 Tax=Desulfovibrio sp. FW1012... 110 1e-23 UniRef50_Q2J830 N utilization substance protein B homolog n=3 Ta... 110 1e-23 UniRef50_B3ERI6 Putative uncharacterized protein n=1 Tax=Candida... 110 2e-23 UniRef50_C7RA09 Sun protein n=1 Tax=Kangiella koreensis DSM 1606... 110 2e-23 UniRef50_A4BK87 Putative uncharacterized protein n=1 Tax=Reineke... 110 2e-23 UniRef50_A9FBW8 Sun protein n=1 Tax=Sorangium cellulosum 'So ce ... 110 2e-23 UniRef50_Q2NQQ2 Ribosomal RNA small subunit methyltransferase B ... 110 2e-23 UniRef50_B8D2G0 N utilization substance protein B homolog n=1 Ta... 109 2e-23 UniRef50_A5EWM0 RRNA SAM-dependent methyltransferase, Fmu n=2 Ta... 109 2e-23 UniRef50_UPI000174635C RsmB n=1 Tax=Verrucomicrobium spinosum DS... 109 3e-23 UniRef50_C5SLV1 NusB antitermination factor n=2 Tax=Caulobactera... 109 3e-23 UniRef50_D0MH27 Sun protein n=1 Tax=Rhodothermus marinus DSM 425... 109 3e-23 UniRef50_A8TL32 NusB antitermination factor n=1 Tax=alpha proteo... 109 3e-23 UniRef50_C3WQ58 16S rRNA m(5)C 967 methyltransferase n=15 Tax=Fu... 109 3e-23 UniRef50_B0MDS2 Putative uncharacterized protein n=1 Tax=Anaeros... 109 4e-23 UniRef50_A5WHT3 NusB antitermination factor n=1 Tax=Psychrobacte... 108 4e-23 UniRef50_A7NB00 Transcription antitermination factor n=19 Tax=Fr... 108 4e-23 UniRef50_UPI0000D5356A transcription termination factor (NusB) n... 108 4e-23 UniRef50_B8KLT3 Ribosomal RNA small subunit methyltransferase B ... 108 4e-23 UniRef50_A8RCQ7 Putative uncharacterized protein n=1 Tax=Eubacte... 108 4e-23 UniRef50_UPI0001BC31DE NusB antitermination factor n=1 Tax=Butyr... 108 5e-23 UniRef50_C1TMF2 Transcription antitermination factor NusB n=1 Ta... 108 5e-23 UniRef50_A8GMD2 N utilization substance protein B homolog n=15 T... 108 5e-23 UniRef50_A8SZ12 Putative uncharacterized protein n=2 Tax=Clostri... 108 5e-23 UniRef50_Q01T72 N utilization substance protein B homolog n=1 Ta... 108 7e-23 UniRef50_Q1J0I4 N utilization substance protein B homolog n=3 Ta... 108 7e-23 UniRef50_Q0SP57 N utilization substance protein B homolog n=43 T... 108 7e-23 UniRef50_B5JST2 Ribosomal RNA small subunit methyltransferase B ... 108 8e-23 UniRef50_C3XHP1 Predicted protein n=1 Tax=Helicobacter bilis ATC... 108 8e-23 UniRef50_Q18B61 N utilization substance protein B homolog n=6 Ta... 107 9e-23 UniRef50_C5C681 N utilization substance protein B homolog n=14 T... 107 9e-23 UniRef50_Q1MPZ7 TRNA and rRNA cytosine-C5-methylases n=1 Tax=Law... 107 1e-22 UniRef50_Q2SSR7 RRNA methyltransferase RsmB (Sun protein), putat... 107 1e-22 UniRef50_A8I0J8 Antitermination protein n=1 Tax=Azorhizobium cau... 107 1e-22 UniRef50_C8PI00 Transcription antitermination factor NusB n=1 Ta... 107 1e-22 UniRef50_Q2RTC4 N utilization substance protein B homolog n=1 Ta... 107 1e-22 UniRef50_B1N082 Transcription termination factor n=3 Tax=Leucono... 107 1e-22 UniRef50_Q72JL6 N utilization substance protein B homolog n=3 Ta... 106 1e-22 UniRef50_A4E6J4 Putative uncharacterized protein n=1 Tax=Collins... 106 2e-22 UniRef50_C7LUK3 Sun protein n=1 Tax=Desulfomicrobium baculatum D... 106 2e-22 UniRef50_Q4FPZ1 N utilization substance protein B homolog n=19 T... 106 3e-22 UniRef50_D1BMJ1 NusB antitermination factor n=3 Tax=Veillonella ... 106 3e-22 UniRef50_C5R7W5 Transcription antitermination protein NusB n=1 T... 106 3e-22 UniRef50_UPI0000E0DBE4 Putative Sun protein n=1 Tax=Rhodobactera... 106 3e-22 UniRef50_B6BUY9 Transcription antitermination factor NusB n=1 Ta... 105 3e-22 UniRef50_C8WHT5 NusB/RsmB/TIM44 n=1 Tax=Eggerthella lenta DSM 22... 105 4e-22 UniRef50_C7H6X0 Transcription antitermination factor NusB n=3 Ta... 105 4e-22 UniRef50_Q0BWV2 Putative ribosomal RNA small subunit methyltrans... 105 6e-22 UniRef50_D0LCQ6 Transcription antitermination factor NusB n=3 Ta... 105 6e-22 UniRef50_C0W1L8 Putative uncharacterized protein n=1 Tax=Actinom... 105 6e-22 UniRef50_C0QI57 RsmB n=1 Tax=Desulfobacterium autotrophicum HRM2... 105 6e-22 UniRef50_C2BWJ7 Possible transcription antitermination protein N... 105 7e-22 UniRef50_Q21DD2 Fmu (Sun) n=13 Tax=Rhizobiales RepID=Q21DD2_RHOPB 104 8e-22 UniRef50_UPI00016C434C transcription antitermination protein Nus... 104 9e-22 UniRef50_Q2RN41 tRNA and rRNA cytosine-C5-methylase n=1 Tax=Rhod... 104 1e-21 UniRef50_C4G0T0 Putative uncharacterized protein n=1 Tax=Abiotro... 104 1e-21 UniRef50_C6JJK8 N utilization substance protein B n=2 Tax=Fusoba... 103 2e-21 UniRef50_A7BC97 Putative uncharacterized protein n=1 Tax=Actinom... 103 2e-21 UniRef50_C6XIX5 NusB antitermination factor n=1 Tax=Hirschia bal... 103 2e-21 UniRef50_A1TWM9 Sun protein n=3 Tax=Marinobacter RepID=A1TWM9_MARAV 103 2e-21 UniRef50_B7S425 Predicted protein n=1 Tax=Phaeodactylum tricornu... 103 3e-21 UniRef50_UPI0001BC2C20 NusB antitermination factor n=1 Tax=Brevi... 102 3e-21 UniRef50_Q8NQ33 N utilization substance protein B homolog n=5 Ta... 102 3e-21 UniRef50_B6JAF7 SUN protein n=6 Tax=Alphaproteobacteria RepID=B6... 102 3e-21 UniRef50_D1B5H9 NusB antitermination factor n=1 Tax=Thermanaerov... 102 3e-21 UniRef50_A0Z2Z6 Sun protein n=2 Tax=unclassified Gammaproteobact... 102 3e-21 UniRef50_A7IBA4 Sun protein n=6 Tax=Rhizobiales RepID=A7IBA4_XANP2 102 3e-21 UniRef50_C4GAK6 Putative uncharacterized protein n=1 Tax=Shuttle... 102 3e-21 UniRef50_D0BJY7 Transcription antitermination factor NusB n=2 Ta... 102 4e-21 UniRef50_C7RHU9 NusB antitermination factor n=2 Tax=Anaerococcus... 102 4e-21 UniRef50_A4CML6 NusB family protein n=2 Tax=Flavobacteria RepID=... 101 5e-21 UniRef50_C2KZE7 Putative uncharacterized protein n=1 Tax=Oribact... 101 5e-21 UniRef50_C7MNL0 tRNA/rRNA cytosine-C5-methylase n=1 Tax=Cryptoba... 101 6e-21 UniRef50_D1R8R5 Putative uncharacterized protein n=1 Tax=Parachl... 101 6e-21 UniRef50_A3MAA2 16S rRNA m5C967 SAM-dependent methyltransferase ... 101 7e-21 UniRef50_B8J1H7 NusB/RsmB/TIM44 n=1 Tax=Desulfovibrio desulfuric... 101 8e-21 UniRef50_C1SH03 Transcription antitermination factor NusB n=1 Ta... 101 8e-21 UniRef50_C6W6R3 NusB antitermination factor n=1 Tax=Dyadobacter ... 101 8e-21 UniRef50_UPI0001BC6038 transcription antitermination protein Nus... 101 9e-21 UniRef50_A1AVP0 Sun protein n=1 Tax=Candidatus Ruthia magnifica ... 101 1e-20 UniRef50_A8PKU4 Ribosomal RNA small subunit methyltransferase B ... 100 1e-20 UniRef50_Q044I1 Transcription termination factor n=18 Tax=Lactob... 100 1e-20 UniRef50_B7CB38 Putative uncharacterized protein n=1 Tax=Eubacte... 100 2e-20 UniRef50_C3WZH3 Transcription antitermination protein NusB n=4 T... 100 2e-20 UniRef50_C6I119 Transcription antitermination factor (NusB) n=1 ... 100 2e-20 UniRef50_B5YIL4 Sun protein n=1 Tax=Thermodesulfovibrio yellowst... 100 2e-20 UniRef50_D2QU07 NusB antitermination factor n=1 Tax=Spirosoma li... 100 2e-20 UniRef50_C9L054 NusB family protein n=34 Tax=Bacteroidales RepID... 100 2e-20 UniRef50_UPI0001C31BDA sun protein n=1 Tax=Conexibacter woesei D... 100 2e-20 UniRef50_Q607V0 N utilization substance protein B homolog n=1 Ta... 100 3e-20 UniRef50_A1B2A9 NusB antitermination factor n=43 Tax=Rhodobacter... 100 3e-20 UniRef50_D1KD39 Ribosomal RNA small subunit methyltransferase B ... 100 3e-20 UniRef50_C2BPE4 Transcription antitermination protein NusB n=2 T... 99 3e-20 UniRef50_UPI0001BC65B2 16S rRNA m(5)C 967 methyltransferase n=2 ... 99 3e-20 UniRef50_A3VQU7 TRNA and rRNA cytosine-C5-methylase-like protein... 99 3e-20 UniRef50_C7PI91 NusB antitermination factor n=1 Tax=Chitinophaga... 99 4e-20 UniRef50_Q88B41 Ribosomal RNA small subunit methyltransferase B ... 99 4e-20 UniRef50_Q14PA1 Putative ribosomal rna small subunit methyltrans... 99 5e-20 UniRef50_C0N5F9 Ribosomal RNA small subunit methyltransferase B ... 99 5e-20 UniRef50_C0QT45 N utilization substance protein B homolog n=2 Ta... 99 6e-20 UniRef50_C0WL14 Transcription antitermination protein NusB n=1 T... 98 7e-20 UniRef50_C8NZ84 rRNA methylase n=1 Tax=Erysipelothrix rhusiopath... 98 8e-20 UniRef50_Q2S463 Ribosomal RNA small subunit methyltransferase B ... 98 9e-20 UniRef50_B8J9P4 NusB/RsmB/TIM44 n=4 Tax=Anaeromyxobacter RepID=B... 98 9e-20 UniRef50_A6UED5 Fmu (Sun) domain protein n=14 Tax=Rhizobiales Re... 98 9e-20 UniRef50_Q1N3W2 16S rRNA m5C967 methyltransferase, S-adenosyl-L-... 98 1e-19 UniRef50_C2D8V4 Putative uncharacterized protein n=1 Tax=Atopobi... 97 1e-19 UniRef50_D1R943 Putative uncharacterized protein n=1 Tax=Parachl... 97 1e-19 UniRef50_Q9CHN4 N utilization substance protein B homolog n=1 Ta... 97 1e-19 UniRef50_B0JGZ3 N utilization substance protein B homolog n=12 T... 97 1e-19 UniRef50_A6LN58 NusB/RsmB/TIM44 n=2 Tax=Thermosipho RepID=A6LN58... 97 2e-19 UniRef50_UPI0001699525 transcription antitermination protein Nus... 97 2e-19 UniRef50_A8RBL8 Putative uncharacterized protein n=2 Tax=unclass... 97 2e-19 UniRef50_Q0VTE3 tRNA and rRNA cytosine-C5-methylase, putative n=... 97 2e-19 UniRef50_C7M0X2 NusB antitermination factor n=1 Tax=Acidimicrobi... 96 3e-19 UniRef50_A5WI31 Fmu (Sun) domain protein n=3 Tax=Psychrobacter R... 96 4e-19 UniRef50_C2CFC5 Possible transcription antitermination protein N... 96 4e-19 UniRef50_A9BJY1 NusB antitermination factor n=1 Tax=Petrotoga mo... 96 4e-19 UniRef50_Q030T8 Transcription termination factor n=3 Tax=Lactoco... 95 4e-19 UniRef50_C5PR17 N utilization substance protein n=2 Tax=Sphingob... 95 5e-19 UniRef50_Q04EK8 Transcription termination factor n=2 Tax=Oenococ... 95 6e-19 UniRef50_C0BGT7 Transcription antitermination factor NusB n=1 Ta... 95 7e-19 UniRef50_C5CGV6 NusB/RsmB/TIM44 n=1 Tax=Kosmotoga olearia TBF 19... 95 7e-19 UniRef50_B9GFY0 Predicted protein n=6 Tax=Spermatophyta RepID=B9... 95 7e-19 UniRef50_P74395 N utilization substance protein B homolog n=16 T... 95 7e-19 UniRef50_B6FZ39 Putative uncharacterized protein n=1 Tax=Clostri... 95 7e-19 UniRef50_Q0F395 Sun protein n=1 Tax=Mariprofundus ferrooxydans P... 95 8e-19 UniRef50_B9ZKR1 Sun protein n=2 Tax=Chromatiales RepID=B9ZKR1_9GAMM 95 8e-19 UniRef50_C9UP93 Fmu domain-containing protein n=1 Tax=Brucella a... 95 8e-19 UniRef50_B6GC41 Putative uncharacterized protein n=2 Tax=Collins... 95 9e-19 UniRef50_B8DMM9 NusB/RsmB/TIM44 n=1 Tax=Desulfovibrio vulgaris s... 95 9e-19 UniRef50_A1WZH2 Sun protein n=1 Tax=Halorhodospira halophila SL1... 95 9e-19 UniRef50_A1ZKP0 NusB antitermination factor n=1 Tax=Microscilla ... 95 9e-19 UniRef50_B1A1G7 Putative N utilization substance protein (Fragme... 95 9e-19 UniRef50_A5CEP9 N utilization substance protein B n=2 Tax=Orient... 94 1e-18 UniRef50_Q603G1 Sun protein n=1 Tax=Methylococcus capsulatus Rep... 94 1e-18 UniRef50_B3E3P1 Sun protein n=4 Tax=Desulfuromonadales RepID=B3E... 94 1e-18 UniRef50_C2MAV6 NusB family protein n=1 Tax=Porphyromonas uenoni... 94 1e-18 UniRef50_C3J8Y9 NusB family protein n=2 Tax=Bacteria RepID=C3J8Y... 94 1e-18 UniRef50_C2HH21 Possible rRNA SAM-dependent methyltransferase Rm... 94 1e-18 UniRef50_Q0C0J1 N utilization substance protein B homolog n=1 Ta... 94 2e-18 UniRef50_Q0AKI8 Fmu (Sun) domain protein n=1 Tax=Maricaulis mari... 94 2e-18 UniRef50_A0M4D8 Antitermination protein NusB n=8 Tax=Bacteroidet... 94 2e-18 UniRef50_C9Q172 N utilization substance protein NusB n=9 Tax=Pre... 93 2e-18 UniRef50_A6EGS9 Putative N utilization substance protein n=1 Tax... 93 2e-18 UniRef50_C5X355 Putative uncharacterized protein Sb02g027560 n=1... 93 3e-18 UniRef50_Q2VBT2 NusB n=1 Tax=uncultured Bacteroidetes bacterium ... 93 3e-18 UniRef50_C7N543 tRNA/rRNA cytosine-C5-methylase n=2 Tax=Slackia ... 93 3e-18 UniRef50_B2UP28 Sun protein n=1 Tax=Akkermansia muciniphila ATCC... 93 4e-18 UniRef50_Q2G467 N utilization substance protein B homolog n=7 Ta... 92 4e-18 UniRef50_Q7NKZ0 N utilization substance protein B homolog n=1 Ta... 92 5e-18 UniRef50_D2MQI4 Putative ribosomal RNA small subunit methyltrans... 92 5e-18 UniRef50_C2KPZ2 Possible transcription antitermination protein N... 92 6e-18 UniRef50_A0LDW0 Sun protein n=2 Tax=cellular organisms RepID=A0L... 92 7e-18 UniRef50_C3RL93 Predicted protein n=4 Tax=Bacteria RepID=C3RL93_... 92 7e-18 UniRef50_A8YVX2 Transcription termination n=9 Tax=Lactobacillus ... 92 8e-18 UniRef50_B9Y7F7 Putative uncharacterized protein n=1 Tax=Holdema... 92 8e-18 UniRef50_D0J9N1 Antitermination protein NusB n=2 Tax=Blattabacte... 91 8e-18 UniRef50_C7NCF2 NusB antitermination factor n=4 Tax=Fusobacteria... 91 9e-18 UniRef50_Q87AR1 Ribosomal RNA small subunit methyltransferase B ... 91 9e-18 UniRef50_A3HY11 Putative N utilization substance protein n=1 Tax... 91 1e-17 UniRef50_Q88RR3 Ribosomal RNA small subunit methyltransferase B ... 91 1e-17 UniRef50_C2M6F3 NusB family protein n=1 Tax=Capnocytophaga gingi... 91 1e-17 UniRef50_D1RHX8 Ribosomal RNA small subunit methyltransferase B ... 91 1e-17 UniRef50_B3PGY5 Ribosomal RNA small subunit methyltransferase B ... 90 2e-17 UniRef50_B9QVY4 Ribosomal RNA small subunit methyltransferase B ... 90 2e-17 UniRef50_Q6MAQ2 Putative transcription termination factor, nusB ... 90 2e-17 UniRef50_Q8RII1 N utilization substance protein B homolog n=7 Ta... 90 2e-17 UniRef50_C0XST3 Transcription antitermination protein NusB n=1 T... 90 2e-17 UniRef50_Q0BRA0 16S rRNA m(5)C 967 methyltransferase n=12 Tax=Ac... 90 2e-17 UniRef50_C1A8F7 Antitermination protein NusB n=1 Tax=Gemmatimona... 90 2e-17 UniRef50_A9IZD6 SUN-family protein n=5 Tax=Bartonella RepID=A9IZ... 90 2e-17 UniRef50_A6GX17 N utilization substance protein B homolog (NusBp... 90 3e-17 UniRef50_C8PZ41 Ribosomal RNA small subunit methyltransferase B ... 90 3e-17 UniRef50_B9JUI9 Sun protein n=44 Tax=Rhizobiales RepID=B9JUI9_AGRVS 90 3e-17 UniRef50_B2UNF0 NusB antitermination factor n=1 Tax=Akkermansia ... 90 3e-17 UniRef50_B4U865 NusB antitermination factor n=1 Tax=Hydrogenobac... 90 3e-17 UniRef50_C8W755 NusB/RsmB/TIM44 n=1 Tax=Atopobium parvulum DSM 2... 89 3e-17 UniRef50_Q7MW39 NusB family protein n=2 Tax=Porphyromonas gingiv... 89 3e-17 UniRef50_Q2JHC7 N utilization substance protein B homolog n=3 Ta... 89 3e-17 UniRef50_C9RK88 Fmu (Sun) domain protein n=1 Tax=Fibrobacter suc... 89 3e-17 UniRef50_C6WZZ6 Transcription termination protein NusB n=2 Tax=F... 89 4e-17 UniRef50_Q651X9 Os09g0477900 protein n=3 Tax=Magnoliophyta RepID... 89 5e-17 UniRef50_Q9LK54 Similarity to SUN and FMU proteins n=3 Tax=Embry... 89 6e-17 UniRef50_C9M539 Transcription antitermination factor NusB n=1 Ta... 88 8e-17 UniRef50_Q0G330 Putative uncharacterized protein n=5 Tax=Rhizobi... 88 9e-17 UniRef50_A3UKE9 RRNA methyltransferase RsmB n=1 Tax=Oceanicaulis... 88 9e-17 UniRef50_Q0FEH7 Ribosomal RNA small subunit methyltransferase B,... 88 9e-17 UniRef50_B0MX54 Putative uncharacterized protein n=1 Tax=Alistip... 87 1e-16 UniRef50_D2MQ58 Transcription antitermination factor NusB n=1 Ta... 87 2e-16 UniRef50_Q1IY91 rRNA methyltransferase, sun family protein n=3 T... 87 2e-16 UniRef50_B4WQD6 Transcription antitermination factor NusB, putat... 87 2e-16 UniRef50_C8NU84 N utilization substance protein B family protein... 87 2e-16 UniRef50_D1Y3T9 Transcription antitermination factor NusB n=1 Ta... 86 3e-16 UniRef50_Q5ZSC6 rRNA methyltransferase (SUN protein) n=5 Tax=Gam... 86 3e-16 UniRef50_UPI000185C78C antitermination protein NusB n=1 Tax=Capn... 86 3e-16 UniRef50_Q5SK01 Sun protein (RNA methyltransferase) n=4 Tax=Ther... 86 4e-16 UniRef50_C7MCJ5 Transcription antitermination factor NusB n=1 Ta... 86 4e-16 UniRef50_Q2GKH0 N utilization substance protein B n=5 Tax=Anapla... 86 4e-16 UniRef50_Q26ET0 Putative antitermination protein NusB n=1 Tax=Fl... 86 4e-16 UniRef50_B9CK37 NusB/NOL1/NOP2/sun family protein n=1 Tax=Atopob... 86 4e-16 UniRef50_B2VAC4 NusB antitermination factor n=2 Tax=Sulfurihydro... 85 5e-16 UniRef50_C6XT54 NusB/RsmB/TIM44 n=1 Tax=Pedobacter heparinus DSM... 85 8e-16 UniRef50_Q3KKK7 N utilization substance protein B homolog n=9 Ta... 85 8e-16 UniRef50_C1DXN6 Transcription antitermination factor NusB n=1 Ta... 84 1e-15 UniRef50_Q8TGY0 tRNA/rRNA cytosine-C5-methylase n=1 Tax=Methanop... 84 1e-15 UniRef50_Q5GT93 Transcription termination factor, NusB n=7 Tax=W... 84 1e-15 UniRef50_C6P2V1 Sun protein n=1 Tax=Sideroxydans lithotrophicus ... 84 1e-15 UniRef50_UPI0001C31981 NusB antitermination factor n=1 Tax=Conex... 84 1e-15 UniRef50_Q8DKS0 N utilization substance protein B homolog n=1 Ta... 84 1e-15 UniRef50_Q2ST59 N utilization substance protein B (NusB), putati... 84 2e-15 UniRef50_C1SIP0 tRNA/rRNA cytosine-C5-methylase n=1 Tax=Denitrov... 83 2e-15 UniRef50_Q11SB2 Antitermination factor n=1 Tax=Cytophaga hutchin... 83 2e-15 UniRef50_D1AKD9 Fmu (Sun) domain protein n=4 Tax=Fusobacteriacea... 83 2e-15 UniRef50_C6QJ47 Sun protein n=1 Tax=Hyphomicrobium denitrificans... 83 3e-15 UniRef50_P45679 Ribosomal RNA small subunit methyltransferase B ... 83 3e-15 UniRef50_B2SFT3 tRNA and rRNA cytosine-C5-methylase, sun protein... 83 4e-15 UniRef50_O27960 Fmu and fmv protein n=1 Tax=Archaeoglobus fulgid... 82 4e-15 UniRef50_D0RNV5 N utilization substance protein B n=1 Tax=alpha ... 82 5e-15 UniRef50_Q9Z6S0 N utilization substance protein B homolog n=5 Ta... 82 5e-15 UniRef50_B7J3C2 Sun protein n=2 Tax=Acidithiobacillus ferrooxida... 82 6e-15 UniRef50_D1AVZ4 NusB antitermination factor n=1 Tax=Streptobacil... 82 7e-15 UniRef50_C8NZM3 N utilization substance protein B family protein... 82 7e-15 UniRef50_A4BP82 Fmu, rRNA SAM-dependent methyltransferase n=1 Ta... 82 7e-15 UniRef50_A1KRE7 SUN-family protein n=32 Tax=Neisseriaceae RepID=... 82 7e-15 UniRef50_A6G719 Putative uncharacterized protein n=1 Tax=Plesioc... 82 8e-15 UniRef50_C5V0U6 Sun protein n=1 Tax=Gallionella ferruginea ES-2 ... 82 8e-15 UniRef50_C9LEM4 NusB family protein n=1 Tax=Prevotella tannerae ... 81 1e-14 UniRef50_B8BTD6 Predicted protein n=1 Tax=Thalassiosira pseudona... 81 1e-14 UniRef50_D0WMZ9 B-like utilization substance protein n=1 Tax=Act... 80 2e-14 UniRef50_D2UG22 Putative trna and rrna cytosine-c5-methylase pro... 80 2e-14 UniRef50_B6WUQ6 Putative uncharacterized protein n=1 Tax=Desulfo... 80 3e-14 UniRef50_D0KVS1 Sun protein n=1 Tax=Halothiobacillus neapolitanu... 79 4e-14 UniRef50_C6XFI6 Fmu (Sun) domain protein n=1 Tax=Candidatus Libe... 79 4e-14 UniRef50_C5A6U4 SAM-dependent tRNA/rRNA cytosine-C5 methylase n=... 79 4e-14 UniRef50_A6FYF2 Ribosomal RNA small subunit methyltransferase B ... 79 5e-14 UniRef50_Q7V3R0 Antitermination protein NusB n=7 Tax=Prochloroco... 79 5e-14 UniRef50_C7RGU2 Fmu (Sun) domain protein n=4 Tax=Anaerococcus Re... 79 5e-14 UniRef50_Q16CE2 RRNA methyltransferase RsmB n=15 Tax=Rhodobacter... 78 7e-14 UniRef50_C1TRU2 tRNA/rRNA cytosine-C5-methylase n=1 Tax=Dethiosu... 78 1e-13 UniRef50_C9M5B8 Putative Sun protein n=1 Tax=Jonquetella anthrop... 77 1e-13 UniRef50_B9YCQ6 Putative uncharacterized protein n=1 Tax=Holdema... 77 1e-13 UniRef50_A4E6P2 Putative uncharacterized protein n=1 Tax=Collins... 77 2e-13 UniRef50_Q7V9D9 Antitermination protein NusB n=18 Tax=cellular o... 77 2e-13 UniRef50_Q40J48 N utilization substance protein B, putative n=4 ... 77 2e-13 UniRef50_B6BVG1 Sun protein n=1 Tax=beta proteobacterium KB13 Re... 77 2e-13 UniRef50_D1N3Y9 Fmu (Sun) domain protein n=1 Tax=Victivallis vad... 76 4e-13 UniRef50_C5SHX2 Sun protein n=1 Tax=Asticcacaulis excentricus CB... 75 7e-13 UniRef50_D1Y2M1 Fmu n=1 Tax=Pyramidobacter piscolens W5455 RepID... 75 7e-13 UniRef50_UPI0000E87C3C sun; rRNA methylase n=1 Tax=Methylophilal... 74 1e-12 UniRef50_A5V7N4 Fmu (Sun) domain protein n=7 Tax=Sphingomonadale... 74 1e-12 UniRef50_Q46I53 Antitermination protein NusB n=2 Tax=Prochloroco... 73 2e-12 UniRef50_B6YR78 Transcription termination factor NusB n=1 Tax=Ca... 73 2e-12 UniRef50_Q601I2 Putative uncharacterized protein n=5 Tax=Mycopla... 73 3e-12 UniRef50_B1ZZX2 Fmu (Sun) domain protein n=2 Tax=Opitutaceae Rep... 72 5e-12 UniRef50_B6W6K6 Putative uncharacterized protein n=1 Tax=Anaeroc... 72 7e-12 UniRef50_Q8TGZ4 tRNA/rRNA cytosine-C5-methylase n=1 Tax=Methanop... 71 9e-12 UniRef50_C7I4U3 Sun protein n=1 Tax=Thiomonas intermedia K12 Rep... 71 1e-11 UniRef50_Q4FLU0 Antitermination protein NusB n=3 Tax=Candidatus ... 71 1e-11 UniRef50_Q14MH2 Hypothetical transcription factor involved in an... 70 2e-11 UniRef50_B5Y8M6 Putative uncharacterized protein n=1 Tax=Coproth... 70 2e-11 UniRef50_Q2YC21 Sun protein n=7 Tax=Betaproteobacteria RepID=Q2Y... 70 2e-11 UniRef50_B1AIT8 Transcription antitermination factor NusB n=15 T... 70 2e-11 UniRef50_D2RGI9 Fmu (Sun) domain protein n=2 Tax=Archaeoglobacea... 70 3e-11 UniRef50_D1J7Q8 N utilization substance protein B homolog(Protei... 70 3e-11 UniRef50_Q2GCQ0 Putative N utilization substance protein B n=2 T... 70 3e-11 UniRef50_Q8TGY2 tRNA/rRNA cytosine-C5-methylase n=1 Tax=Methanop... 69 4e-11 UniRef50_A5IYQ6 Transcription termination factor (NusB) n=2 Tax=... 69 5e-11 UniRef50_A9RW70 Predicted protein (Fragment) n=1 Tax=Physcomitre... 69 5e-11 UniRef50_Q9V089 Sun/NOL1/NOP nucleolar protein n=3 Tax=Pyrococcu... 69 6e-11 UniRef50_Q7Y092 Os03g0656900 protein n=9 Tax=Poaceae RepID=Q7Y09... 68 6e-11 UniRef50_C5J681 Putative uncharacterized protein MCJ_002820 n=1 ... 67 2e-10 UniRef50_Q4A684 Putative uncharacterized protein n=1 Tax=Mycopla... 67 3e-10 UniRef50_A1B5L0 Fmu (Sun) domain protein n=30 Tax=Alphaproteobac... 66 5e-10 UniRef50_UPI00003837A7 COG0144: tRNA and rRNA cytosine-C5-methyl... 65 6e-10 UniRef50_A9NFG4 Transcription antitermination factor n=1 Tax=Ach... 65 7e-10 UniRef50_D0GJC1 Putative ribosomal RNA small subunit methyltrans... 64 1e-09 UniRef50_B3PM53 Transcription termination factor n=1 Tax=Mycopla... 64 2e-09 UniRef50_B9GXX5 Predicted protein n=2 Tax=Spermatophyta RepID=B9... 63 3e-09 UniRef50_Q8EWP3 Transcription termination factor N-utilization s... 63 4e-09 UniRef50_D1H5W4 Whole genome shotgun sequence of line PN40024, s... 63 4e-09 UniRef50_B4RCX9 rRNA methyltransferase RsmB n=8 Tax=Alphaproteob... 62 4e-09 UniRef50_D1B789 Fmu (Sun) domain protein n=1 Tax=Thermanaerovibr... 62 6e-09 UniRef50_Q3YSG7 Putative uncharacterized protein n=1 Tax=Ehrlich... 61 1e-08 UniRef50_C0ADS6 Fmu (Sun) domain protein (Fragment) n=1 Tax=Opit... 61 1e-08 UniRef50_A6DSU1 tRNA and rRNA cytosine-C5-methylase n=1 Tax=Lent... 60 2e-08 UniRef50_UPI000169938E Sun protein n=1 Tax=Endoriftia persephone... 58 1e-07 UniRef50_C0B8Y2 Putative uncharacterized protein n=1 Tax=Coproco... 57 2e-07 UniRef50_Q98R41 Putative uncharacterized protein MYPU_1690 n=1 T... 57 2e-07 UniRef50_C8WDB8 Fmu (Sun) domain protein n=3 Tax=Zymomonas mobil... 55 7e-07 UniRef50_Q2NJE9 N utilization substance protein B n=4 Tax=Candid... 54 2e-06 UniRef50_Q7NAX6 Putative uncharacterized protein n=1 Tax=Mycopla... 47 2e-04 Sequences not found previously or not previously below threshold: UniRef50_A4T0M4 Sun protein n=2 Tax=Polynucleobacter necessarius... 53 3e-06 UniRef50_Q5P4P8 tRNA and rRNA cytosine-C5-methylases sun n=8 Tax... 49 4e-05 UniRef50_A5B766 Putative uncharacterized protein n=1 Tax=Vitis v... 48 8e-05 UniRef50_Q2T2A8 Sun protein n=76 Tax=Proteobacteria RepID=Q2T2A8... 48 8e-05 UniRef50_C6NTF2 Ribosomal RNA small subunit methyltransferase B ... 44 0.002 UniRef50_B6IQ69 tRNA and rRNA cytosine-C5-methylase, putative n=... 43 0.004 UniRef50_D0ME27 Fmu (Sun) domain protein n=1 Tax=Rhodothermus ma... 42 0.005 UniRef50_D0KW91 Fmu (Sun) domain protein n=1 Tax=Halothiobacillu... 42 0.006 UniRef50_UPI000196CC25 hypothetical protein CATMIT_02482 n=1 Tax... 42 0.008 UniRef50_C5KW57 Putative uncharacterized protein (Fragment) n=3 ... 42 0.008 UniRef50_C5CKF6 Sun protein n=5 Tax=Betaproteobacteria RepID=C5C... 41 0.010 UniRef50_A1WK57 Sun protein n=17 Tax=cellular organisms RepID=A1... 40 0.027 UniRef50_Q2RXU7 tRNA/rRNA cytosine-C5-methylase n=8 Tax=Alphapro... 39 0.057 UniRef50_Q8TH02 tRNA/rRNA cytosine-C5-methylase n=1 Tax=Methanop... 38 0.064 UniRef50_Q8TGY3 tRNA/rRNA cytosine-C5-methylase n=1 Tax=Methanop... 38 0.087 >UniRef50_A4VHT5 N utilization substance protein B homolog n=23 Tax=Gammaproteobacteria RepID=NUSB_PSEU5 Length = 161 Score = 161 bits (408), Expect = 8e-39, Method: Composition-based stats. Identities = 71/137 (51%), Positives = 89/137 (64%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 K A RR AR A+QALY W ++ + ++E QF + D VD YF ELL GVA Sbjct: 19 KIATRRVARSLAMQALYQWHMAGQSLNEIEAQFRVDNDFSGVDGAYFHELLNGVARKKTE 78 Query: 62 LDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 +D + P L R L+EL VE A+LR++ YEL +R DVPY+V INE IELAK +GA D HK Sbjct: 79 VDQAIAPNLDRPLDELDPVELAILRLSTYELMQRIDVPYRVVINEGIELAKVYGATDGHK 138 Query: 122 FVNGVLDKAAPVIRPNK 138 FVNGVLDK AP +R + Sbjct: 139 FVNGVLDKLAPSLRSAE 155 >UniRef50_A7ZIG9 N utilization substance protein B homolog n=118 Tax=Gammaproteobacteria RepID=NUSB_ECO24 Length = 139 Score = 154 bits (390), Expect = 8e-37, Method: Composition-based stats. Identities = 139/139 (100%), Positives = 139/139 (100%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA Sbjct: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH Sbjct: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 Query: 121 KFVNGVLDKAAPVIRPNKK 139 KFVNGVLDKAAPVIRPNKK Sbjct: 121 KFVNGVLDKAAPVIRPNKK 139 >UniRef50_A5D1B7 tRNA and rRNA cytosine-C5-methylases n=6 Tax=Clostridia RepID=A5D1B7_PELTS Length = 456 Score = 154 bits (390), Expect = 1e-36, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 57/128 (44%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 ARE A++ + + + Q L + +D + EL G + LD +++ Sbjct: 9 ARELALKVVNAVEEEGAYANLALNQVLEKHRPGKLDRAFATELAYGTLRSLNTLDWVLEQ 68 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 ++ + L + +LR+ +Y+L VP NE ELA+ +G + KFVNGVL Sbjct: 69 FIKQPLSSQSRTVLNILRLGVYQLMFMDRVPPSAVCNEGAELARKYGHAGTVKFVNGVLR 128 Query: 129 KAAPVIRP 136 + + Sbjct: 129 NISRRLNE 136 >UniRef50_Q1IFL9 N utilization substance protein B homolog n=12 Tax=Proteobacteria RepID=NUSB_PSEE4 Length = 166 Score = 153 bits (387), Expect = 2e-36, Method: Composition-based stats. Identities = 71/137 (51%), Positives = 91/137 (66%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 K A RR AR+ A QALY W ++++ + +VE QF + D DVD YFRE+L GV Sbjct: 24 KSAKRREARKLATQALYQWHMAKHSLNEVEAQFRVDNDFSDVDGAYFREILHGVPAKKVE 83 Query: 62 LDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 +D +KP L LEEL VE +VLR++ +E R+DVPY+V INE +ELAK FGA D HK Sbjct: 84 IDEALKPCLDTPLEELDPVELSVLRLSAWEFMMRADVPYRVVINEGVELAKVFGATDGHK 143 Query: 122 FVNGVLDKAAPVIRPNK 138 FVNGVLDK AP +R + Sbjct: 144 FVNGVLDKLAPRLREAE 160 >UniRef50_Q48DC2 N utilization substance protein B homolog n=51 Tax=Gammaproteobacteria RepID=NUSB_PSE14 Length = 165 Score = 153 bits (387), Expect = 2e-36, Method: Composition-based stats. Identities = 73/137 (53%), Positives = 93/137 (67%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 K A RR AR+ A QALY W ++ + + ++E QF + D +VD YFRELL GVATN Sbjct: 23 KSAKRREARQMATQALYQWHMAGHALNEIEAQFRVDNDFSNVDGAYFRELLHGVATNKTE 82 Query: 62 LDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 +D + P L +EEL VE AVLR++ +EL KR DVPY+V INE IELAK +G+ D HK Sbjct: 83 IDTALSPCLDLTIEELDPVELAVLRLSTFELLKRIDVPYRVVINEGIELAKVYGSTDGHK 142 Query: 122 FVNGVLDKAAPVIRPNK 138 FVNGVLDK AP +R + Sbjct: 143 FVNGVLDKLAPRLREVE 159 >UniRef50_C9R7W0 NusB antitermination factor n=1 Tax=Ammonifex degensii KC4 RepID=C9R7W0_AMMDK Length = 155 Score = 152 bits (386), Expect = 2e-36, Method: Composition-based stats. Identities = 48/132 (36%), Positives = 75/132 (56%), Gaps = 1/132 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +RRRARE A+ L+ + + + LAE + + + L+ G +D Sbjct: 1 MSRRRAREAALMVLFQVDVGGAVPEEALERTLAEWRLGNASREFATSLVLGTLAYRPQID 60 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 +++ R LE + +V++ V+R+ALYEL R D+P VAINEA+ELAK +G E+S +F Sbjct: 61 RVIEELSQRWRLERMNRVDRNVMRLALYELLFRQDIPPAVAINEAVELAKRYGGEESPRF 120 Query: 123 VNGVLDKAAPVI 134 VNG+L K A + Sbjct: 121 VNGILGKVAENL 132 >UniRef50_A7VUU4 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VUU4_9CLOT Length = 446 Score = 152 bits (385), Expect = 3e-36, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 54/128 (42%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLM 66 + AR A++AL + + V LA + D + L GV LD + Sbjct: 5 KNARLTALKALLRVEEGKGYSNLVLDHGLAASGLDGRDAAFASALFYGVLERRITLDYQI 64 Query: 67 KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGV 126 Y L ++ + +LR+ Y+L VP A+NE+++L ++ + + FVNG+ Sbjct: 65 SRYSKMPLSQMAAPVREILRLGFYQLLYMDKVPQSAAVNESVKLTRAVKKDKASGFVNGI 124 Query: 127 LDKAAPVI 134 L Sbjct: 125 LRSFIRDG 132 >UniRef50_D1BMC4 Sun protein n=3 Tax=Veillonella RepID=D1BMC4_VEIPT Length = 451 Score = 152 bits (384), Expect = 4e-36, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 1/132 (0%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 K ++ R AV+AL + ++L + + D+D +F EL+ GV Y Sbjct: 5 KTNQQQNIRLLAVKALSEINRNGAYANIKLQEYLQKYHLSDLDRRFFTELVYGVIRRKNY 64 Query: 62 LDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 LD ++ + R +++L + +LR+ +Y++ VP A+NE+++LAK Sbjct: 65 LDAIIVFFAKRPIKKLSSMVLEILRLGIYQIIYMDKVPESAAVNESVKLAKKL-TRGLSG 123 Query: 122 FVNGVLDKAAPV 133 FVN VL Sbjct: 124 FVNAVLRSVLRE 135 >UniRef50_C5BS84 N utilization substance protein B homolog n=2 Tax=Gammaproteobacteria RepID=NUSB_TERTT Length = 147 Score = 151 bits (382), Expect = 7e-36, Method: Composition-based stats. Identities = 72/141 (51%), Positives = 90/141 (63%), Gaps = 3/141 (2%) Query: 1 MKP--AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATN 58 MK A R RAR A+QA+Y WQ++ N + +E +F + D+ VD YF EL GVA + Sbjct: 1 MKVTAATRSRARHFAMQAIYQWQMNGNPLHVIEAEFHTDNDMSKVDTEYFHELFHGVAAD 60 Query: 59 TAYLDGLMKPYLSR-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 + LD P+L LE+L V A+LR A +EL R DVPYKV INEA+ LAK FGAE Sbjct: 61 KSALDACFLPHLKSLPLEKLDPVTLALLRQATFELKNRVDVPYKVVINEAVNLAKKFGAE 120 Query: 118 DSHKFVNGVLDKAAPVIRPNK 138 DSHKFVNGVLDK A +R + Sbjct: 121 DSHKFVNGVLDKVAADLRALE 141 >UniRef50_A3DCX8 Sun protein n=5 Tax=Clostridium RepID=A3DCX8_CLOTH Length = 455 Score = 150 bits (380), Expect = 1e-35, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 61/129 (47%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 + RE A++ LY ++L Q+ + +D + +++ G +D L++ Sbjct: 9 KVRETALKILYDINEKGAYSNISLNKYLNGQEFESIDRAFITDIVYGTLKWQYTIDYLIE 68 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 + S ++++ +LR+ +Y+L +P+ A NE+++LA +G S K+VN VL Sbjct: 69 KFSSVKIKKISPWIFNILRMGIYQLIYTDKIPFFAACNESVKLAAKYGHAASSKYVNAVL 128 Query: 128 DKAAPVIRP 136 A Sbjct: 129 RNIARNKEN 137 >UniRef50_A8FD39 rRNA SAM-dependent methyltransferase RmsB n=3 Tax=Bacillaceae RepID=A8FD39_BACP2 Length = 447 Score = 148 bits (375), Expect = 5e-35, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 1/131 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 + RE A+ AL + +Q + + ++D+ D D EL+ G N LD Sbjct: 1 MKKSNVREVALDALIKLEQNQAYSNLLLQSVMKDKDLADQDKPLLTELVYGTLQNKLALD 60 Query: 64 GLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 ++ P++ + +++ +LR++LY++ +P + AI+EA+EL K G + V Sbjct: 61 YMLAPFVKKP-QKVAPWVMQLLRMSLYQMVYLEKIPDRAAIHEAVELTKKRGHKGISSLV 119 Query: 124 NGVLDKAAPVI 134 NGVL Sbjct: 120 NGVLRSVQREG 130 >UniRef50_Q0AD60 N utilization substance protein B homolog n=3 Tax=Nitrosomonas RepID=NUSB_NITEC Length = 167 Score = 147 bits (372), Expect = 1e-34, Method: Composition-based stats. Identities = 54/136 (39%), Positives = 79/136 (58%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 RR +RE A+Q +Y W+L+ + +++ Q D YF +LL GV ++ L Sbjct: 20 KNRRRLSRELALQGIYQWRLAGGNAQEIDLQLQQVNFYSKADGSYFSDLLQGVLEHSRDL 79 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + ++ YL R L EL VE ++L I YE+ ++P + INEAIELAKS+G D HK+ Sbjct: 80 EAQIQAYLDRQLAELSPVECSILLIGTYEMVHHPEIPCRAIINEAIELAKSYGGTDGHKY 139 Query: 123 VNGVLDKAAPVIRPNK 138 VNGVLDK A +R + Sbjct: 140 VNGVLDKLAAQLRAVE 155 >UniRef50_B3QZ49 Sun protein n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QZ49_CHLT3 Length = 443 Score = 147 bits (371), Expect = 1e-34, Method: Composition-based stats. Identities = 35/129 (27%), Positives = 61/129 (47%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 +ARE AVQAL +++ F + ++ VD + +++ G +D ++K Sbjct: 3 KAREIAVQALREVEVNHAKSDTALNHFFSITALEPVDRAFTMQIVYGTLREKMKIDHVIK 62 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 + +++ K +LRI Y+L S VP A+NE++ELAK + VNGVL Sbjct: 63 QFYRHDYDKMDIDVKNILRIGAYQLLFLSKVPRWAAVNESVELAKKLKGQFLGNLVNGVL 122 Query: 128 DKAAPVIRP 136 + + Sbjct: 123 RNISNNLES 131 >UniRef50_A3DDP0 N utilization substance protein B homolog n=5 Tax=Clostridium RepID=NUSB_CLOTH Length = 145 Score = 146 bits (370), Expect = 2e-34, Method: Composition-based stats. Identities = 43/130 (33%), Positives = 77/130 (59%), Gaps = 1/130 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 RR +RE A++ +Y ++ ++ + L + D+ + D Y +++ GV N +D Sbjct: 1 MGRRASREIAMKLIYQLEIQKDSREEQINNTLEQYDLNENDREYILDVVKGVFKNQEEID 60 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 G ++ + L + +V+ A+LR+A+YE+ R D+P+ VAINEA+ELAK++ E+S F Sbjct: 61 GTIEKFSKGWKLSRISKVDLAILRLAIYEMCHRDDIPFTVAINEAVELAKNYSGEESGSF 120 Query: 123 VNGVLDKAAP 132 +NG+L K Sbjct: 121 INGILGKVVK 130 >UniRef50_Q2YD50 N utilization substance protein B homolog n=4 Tax=Betaproteobacteria RepID=NUSB_NITMU Length = 158 Score = 146 bits (370), Expect = 2e-34, Method: Composition-based stats. Identities = 53/137 (38%), Positives = 77/137 (56%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 + + RR ARE A+Q LY W ++ +E Q ++ D YF LL GV Sbjct: 17 RKSRRRLARELALQGLYQWCVAGGSAGTIEAQLRDTEEFPKTDEEYFSRLLHGVLMQAPE 76 Query: 62 LDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 L+ ++P L R EL VE ++L + YEL + ++PY+ INEA+ELAK++G HK Sbjct: 77 LEKEIQPCLDRPFNELSPVEISILLLGAYELERHPEIPYRAVINEAVELAKAYGGTHGHK 136 Query: 122 FVNGVLDKAAPVIRPNK 138 +VNGVLDK A +R + Sbjct: 137 YVNGVLDKLAVKLRAAE 153 >UniRef50_A5D319 N utilization substance protein B homolog n=3 Tax=Peptococcaceae RepID=NUSB_PELTS Length = 144 Score = 146 bits (369), Expect = 2e-34, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 68/134 (50%), Gaps = 1/134 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +RR+ARE A+Q L+ + D + + R L+ G N A +D Sbjct: 1 MSRRQARERALQILFQVDVGGADPGEAFRLMDEGFGELKKYQEFARLLVGGTLENLAAID 60 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ + + V++ ++R+ALYE+ D+PY V++NEA+EL K++G E+S +F Sbjct: 61 RVIAGVSKDWNINRMANVDRNIIRMALYEIFFCEDIPYSVSVNEAVELGKTYGGEESGRF 120 Query: 123 VNGVLDKAAPVIRP 136 +NG+L + Sbjct: 121 INGILGRIVESPEE 134 >UniRef50_A1W9I4 N utilization substance protein B homolog n=6 Tax=Comamonadaceae RepID=NUSB_ACISJ Length = 177 Score = 146 bits (369), Expect = 2e-34, Method: Composition-based stats. Identities = 55/136 (40%), Positives = 75/136 (55%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 + R RARE A+QALY + ND ++ D ++ LL G T Y+ Sbjct: 32 KSGRSRAREFALQALYQHLVGGNDATAIDVFTRDLSGFHKADAAHYDALLHGCITTAQYM 91 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 D L+ P L R + E+ +E AV+ I +YE DVP++V INE IELAK FG D HK+ Sbjct: 92 DELIAPQLDRKMSEISPIEHAVMWIGVYEFQHCQDVPWRVVINECIELAKEFGGTDGHKY 151 Query: 123 VNGVLDKAAPVIRPNK 138 VNGVL+ AP +R + Sbjct: 152 VNGVLNGLAPQLRATE 167 >UniRef50_C6D4F5 Sun protein n=87 Tax=Bacilli RepID=C6D4F5_PAESJ Length = 491 Score = 146 bits (369), Expect = 3e-34, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 55/132 (41%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 +PA R RE A+ L + + L E ++ D EL+ G Sbjct: 33 RPARVRTPRELALDTLVKVAETGAYSNLQLNRVLQEAQLQRADAALVTELVYGTIQRQLT 92 Query: 62 LDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 LD + + ++ L +L +LR++ Y+L +P A+NEA+ +AK G + Sbjct: 93 LDHWLGKFAAKGLRKLEPWVHQLLRMSAYQLLYLDRIPAHAAVNEAVTIAKRRGHQGISG 152 Query: 122 FVNGVLDKAAPV 133 VNG+L Sbjct: 153 MVNGILRSIDRN 164 >UniRef50_B6IZ82 N utilization substance protein B homolog n=6 Tax=Coxiella burnetii RepID=NUSB_COXB2 Length = 138 Score = 145 bits (368), Expect = 3e-34, Method: Composition-based stats. Identities = 60/137 (43%), Positives = 82/137 (59%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 M R AR A+QALY W + + QF+ E D+ D DV YF+E++ G + A Sbjct: 1 MINKTRHNARRYALQALYQWFFCETKPDALISQFMEEHDLSDTDVAYFKEVVTGTIQHVA 60 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D LM +L R + L VE +VLR+++YEL R +VPYKV I+EA+EL K FGAE H Sbjct: 61 IIDELMTAHLDRKISALNPVELSVLRLSIYELLHRKEVPYKVVIDEALELVKEFGAEAGH 120 Query: 121 KFVNGVLDKAAPVIRPN 137 K+VN +LD + IR Sbjct: 121 KYVNAILDVLSSEIRKG 137 >UniRef50_Q2RK22 Sun protein n=3 Tax=Clostridia RepID=Q2RK22_MOOTA Length = 457 Score = 145 bits (367), Expect = 4e-34, Method: Composition-based stats. Identities = 33/128 (25%), Positives = 50/128 (39%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 ARE A+Q +Y + L + + EL LD + Sbjct: 10 AREAALQVIYRVTEEGAYAGLALDEVLKSAGLDGRERALATELAYSAIKAWGTLDWALGL 69 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 +L + LE+L + VLR+ +L +P + AI E +ELAK +G + VNGVL Sbjct: 70 FLRQPLEKLPPWIRCVLRLGATQLLYVPRIPPRAAIYETVELAKKYGHRGTTGLVNGVLR 129 Query: 129 KAAPVIRP 136 Sbjct: 130 HLDRQKDA 137 >UniRef50_Q31FT2 N utilization substance protein B homolog n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=NUSB_THICR Length = 161 Score = 145 bits (367), Expect = 4e-34, Method: Composition-based stats. Identities = 60/134 (44%), Positives = 91/134 (67%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R + R A+QALY WQ++ ++ D+ QF E + D DV F+E++ VA + A LD L Sbjct: 24 RTQTRRVALQALYQWQVNHSETVDIIKQFSEEGRLVDTDVALFQEIVNEVANHAADLDEL 83 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 P+L R + + VEK ++R+ ++EL + ++PY+V INE++ELAK FGAEDSHK++NG Sbjct: 84 YAPFLDRAVARIDPVEKNIMRMGVFELQNKLEIPYRVVINESVELAKRFGAEDSHKYING 143 Query: 126 VLDKAAPVIRPNKK 139 +LDKAA +R +K Sbjct: 144 ILDKAAEGLRSLEK 157 >UniRef50_D2RNU3 Sun protein n=3 Tax=Veillonellaceae RepID=D2RNU3_ACIFE Length = 446 Score = 145 bits (367), Expect = 4e-34, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 57/132 (43%), Gaps = 1/132 (0%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK A+ RE A+ L L Q L + +D EL+ G Sbjct: 1 MKGTAK-NPREAALLILEQIFLRGAYANLALDQGLRGATLSPLDRKLTTELVYGTVKTMG 59 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD + ++R L +L + +LR+ Y+L +P A NE+++LAK + E + Sbjct: 60 TLDWYLSRVVNRPLRKLDPLVLVILRLGAYQLLYLDRIPASAACNESVKLAKKWVHEGAG 119 Query: 121 KFVNGVLDKAAP 132 K VNG L + A Sbjct: 120 KLVNGALRQLAR 131 >UniRef50_C4ZEV6 Sun protein n=4 Tax=Clostridiales RepID=C4ZEV6_EUBR3 Length = 469 Score = 145 bits (366), Expect = 5e-34, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 51/128 (39%), Gaps = 1/128 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNTAYLDGLMKP 68 RE A++ L V L + + D + L+ G LD ++ Sbjct: 42 RELALEMLIEINERGAFSHIVLRSVLDKYQYLSKQDRAFMTRLVDGTIEYMLQLDYIIDS 101 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 + + ++ + +LR+++Y++ VP NEA++LAK FVNGVL Sbjct: 102 FSKTKVRKMKPFIRNLLRMSVYQIKYMDAVPDSAVCNEAVKLAKRHKFAQLSGFVNGVLR 161 Query: 129 KAAPVIRP 136 A I Sbjct: 162 NIARNIDS 169 >UniRef50_Q493G9 N utilization substance protein B homolog n=3 Tax=Enterobacteriaceae RepID=NUSB_BLOPB Length = 144 Score = 145 bits (366), Expect = 5e-34, Method: Composition-based stats. Identities = 81/134 (60%), Positives = 104/134 (77%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK +RRRAREC +QALYSWQ+S+ND+ ++E + EQD++D ++ YF EL GV + Sbjct: 1 MKAISRRRARECTLQALYSWQVSKNDVKEIERYVVTEQDIQDCNISYFHELYIGVISCAE 60 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD LM P+LSR LE+LG +E +VLRIAL+EL+K +D+PYKVAINEAIEL K FGAE SH Sbjct: 61 ELDKLMIPHLSRNLEKLGYIEHSVLRIALFELTKCNDIPYKVAINEAIELVKIFGAEKSH 120 Query: 121 KFVNGVLDKAAPVI 134 KF+NGVLDK A + Sbjct: 121 KFINGVLDKIANQL 134 >UniRef50_C7HWX1 NusB antitermination factor n=1 Tax=Thiomonas intermedia K12 RepID=C7HWX1_THIIN Length = 202 Score = 145 bits (366), Expect = 5e-34, Method: Composition-based stats. Identities = 53/136 (38%), Positives = 79/136 (58%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 +ARR++RE A Q +Y W L+ +D +E +D +F+ LL G L Sbjct: 8 KSARRKSRELAFQGIYEWLLAGSDTGAIEAFLHERYPTIKLDDDHFQSLLHGALAEAGPL 67 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 D L++P++ R EL VE A+L + +EL + DVPY+V INEA+EL K +G D +K+ Sbjct: 68 DALIQPHIDRQTSELSPVEHALLLMGAFELQRHLDVPYRVVINEAVELGKVYGGTDGYKY 127 Query: 123 VNGVLDKAAPVIRPNK 138 VNGVLD+ A +R + Sbjct: 128 VNGVLDRIAAQLRKTE 143 >UniRef50_B0MGA0 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0MGA0_9FIRM Length = 448 Score = 145 bits (366), Expect = 5e-34, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 51/128 (39%), Gaps = 1/128 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDV-DVLYFRELLAGVATNTAYLDGLMKP 68 RE A+ L + + L + + D +F L G +D ++ Sbjct: 5 RELALDVLMKIDKKEELSHIAIGETLEKYQFSEKKDRAFFTRLCQGTLERRLTIDYVIDL 64 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 Y + ++ + +++LR+ ++ +P A NE ++LAK G FVNGVL Sbjct: 65 YSKTKVRKMKPLVRSLLRMGACQILFMDHIPDSAACNECVKLAKKRGFSKLSGFVNGVLR 124 Query: 129 KAAPVIRP 136 + + Sbjct: 125 TISRQKQE 132 >UniRef50_A7C6S2 Transcription antitermination protein NusB n=1 Tax=Beggiatoa sp. PS RepID=A7C6S2_9GAMM Length = 164 Score = 145 bits (366), Expect = 5e-34, Method: Composition-based stats. Identities = 67/141 (47%), Positives = 88/141 (62%), Gaps = 12/141 (8%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFL------------AEQDVKDVDVLYFRE 50 P AR ARE +QALY WQL+ + +E QFL E D++ D+ YF++ Sbjct: 10 PKARHVARERVLQALYQWQLTGQNTQLIESQFLDESTLSKEEDESEEPDMQKADIPYFKQ 69 Query: 51 LLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIEL 110 LL + T+ LD L P+L R + +L VE A+LRI YEL+ D+P+KV INEA+EL Sbjct: 70 LLHSIPEKTSDLDKLFAPFLDRKITQLDPVELAILRIGSYELTHCQDIPFKVVINEAVEL 129 Query: 111 AKSFGAEDSHKFVNGVLDKAA 131 AK FGAE SHK++NGVLDK A Sbjct: 130 AKQFGAEQSHKYINGVLDKLA 150 >UniRef50_B0A9Y2 Putative uncharacterized protein n=2 Tax=Clostridium RepID=B0A9Y2_9CLOT Length = 441 Score = 144 bits (365), Expect = 7e-34, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 1/132 (0%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 ++R A + L+ + +QN + + ++ + D + E++ GV N YLD ++ Sbjct: 2 KSRNLAYKVLFDIEKNQNYSNMAINKHFKDCNLDNRDRGFATEIIYGVVENKIYLDYIID 61 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 +L K +LR+ +Y++ V A+NE + L K S FVN VL Sbjct: 62 KLSKIKSNKLNLKVKILLRMGIYQILFLDSVSDYAAVNETVNLTKKL-DNRSAGFVNAVL 120 Query: 128 DKAAPVIRPNKK 139 + Sbjct: 121 RNVIRQKEDIGE 132 >UniRef50_Q0K7T8 N utilization substance protein B homolog n=70 Tax=Betaproteobacteria RepID=NUSB_RALEH Length = 172 Score = 144 bits (365), Expect = 7e-34, Method: Composition-based stats. Identities = 60/136 (44%), Positives = 81/136 (59%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 +ARRR+RE A+Q LY W L++NDI ++ Q D +F LL G A L Sbjct: 32 KSARRRSRELALQGLYQWLLNRNDIGAIQAHLHDAQGFNKADREHFDALLNGAVREEARL 91 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 +P+L R +EEL VE+A L + YEL D+PYKV INEA+EL K+FG + +K+ Sbjct: 92 TAAFEPFLDRKVEELSPVERAALLVGSYELVHCLDIPYKVVINEAVELTKTFGGVEGYKY 151 Query: 123 VNGVLDKAAPVIRPNK 138 VNGVLDK A +R + Sbjct: 152 VNGVLDKLAAQVRAAE 167 >UniRef50_B3DWQ3 N utilization substance protein B homolog n=1 Tax=Methylacidiphilum infernorum V4 RepID=NUSB_METI4 Length = 143 Score = 143 bits (362), Expect = 2e-33, Method: Composition-based stats. Identities = 40/131 (30%), Positives = 70/131 (53%), Gaps = 2/131 (1%) Query: 5 ARRRARECAVQALYSWQLS-QNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +RR+ RE VQ LY W+++ + ++ F + D + L +A + ++ Sbjct: 3 SRRKIRELIVQFLYQWEMNKGVGLDNMLLDFWDFSPLDQKDKEAVEQWLKEIAEHKEAIE 62 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + Y+ L+ L V+K +L + +YE+ R D+P V+INE++E+AK + E+S KF Sbjct: 63 EKINSYVKNWSLDRLAPVDKCILILGIYEILYRKDIPPAVSINESVEIAKKYSTEESGKF 122 Query: 123 VNGVLDKAAPV 133 VNG+LD Sbjct: 123 VNGILDSVLKD 133 >UniRef50_A0Q113 Sun protein n=35 Tax=Clostridium RepID=A0Q113_CLONN Length = 443 Score = 143 bits (361), Expect = 2e-33, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 56/129 (43%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 +AR+ V L V Q L + + D D E++ G +D ++ Sbjct: 3 KARKICVDILEVVFNKNAYSNIVLRQTLNKNKIDDKDKGLITEIVYGTIKYKYTIDTILN 62 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 +L + ++ L +LRI +Y++ +P A+NEA+E+AK + + K VNGVL Sbjct: 63 NFLKKGIKSLDSYVLNILRITVYQIKFLDKIPNFAAVNEAVEIAKKEKSVGASKLVNGVL 122 Query: 128 DKAAPVIRP 136 + Sbjct: 123 RNYLRNLDK 131 >UniRef50_A8FF16 N utilization substance protein B homolog n=28 Tax=Bacillales RepID=NUSB_BACP2 Length = 131 Score = 142 bits (360), Expect = 3e-33, Method: Composition-based stats. Identities = 48/133 (36%), Positives = 76/133 (57%), Gaps = 5/133 (3%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 RR ARE A+Q L+ +S D + L EQ+ +F EL+ GV LD Sbjct: 1 MKRRTAREKALQTLFQIDVSNIDPKEAITHALDEQESDP----FFEELVFGVLEQKDKLD 56 Query: 64 GLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ +L + L+ + V++A+LR+++YE+ + D+P V++NEAIELAK FG + + KF Sbjct: 57 DMISQHLVNWKLDRIANVDRAILRLSVYEMVYQEDIPVSVSMNEAIELAKLFGDDKAPKF 116 Query: 123 VNGVLDKAAPVIR 135 VNGVL ++ Sbjct: 117 VNGVLSNIKNDLK 129 >UniRef50_A8MH88 Sun protein n=7 Tax=Clostridiaceae RepID=A8MH88_ALKOO Length = 445 Score = 142 bits (360), Expect = 3e-33, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 1/124 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 RE A++ LY +++ + L + +D EL+ GV N Y+D ++ + Sbjct: 4 REGALKVLYEINVNEAFSNIALNKELNNESYNLLDRNLLTELVYGVLENQIYIDHVLSQF 63 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 + L+++ +LR+ +Y+L VP A+NE + L+K + + + F+NGVL Sbjct: 64 SNFQLDKMNPYTLNLLRLGIYQLLFLDRVPSFAAVNETVNLSKKYC-KKTTGFINGVLRN 122 Query: 130 AAPV 133 Sbjct: 123 VQRN 126 >UniRef50_Q21F20 N utilization substance protein B homolog n=5 Tax=Gammaproteobacteria RepID=NUSB_SACD2 Length = 150 Score = 142 bits (359), Expect = 4e-33, Method: Composition-based stats. Identities = 74/141 (52%), Positives = 94/141 (66%), Gaps = 3/141 (2%) Query: 1 MKPAA--RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATN 58 MK +A R RAR A+QALY W++S N + +E +F + D+ VDV YF E+L GVA Sbjct: 1 MKVSAAARGRARHFAMQALYQWEMSGNALHVIEAEFHTDNDMSKVDVEYFHEILHGVAAI 60 Query: 59 TAYLDGLMKPYLSR-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 + LD KP+L+ L+E+ V AVLR A YE KR DVPYKV INEA+ LAK FGA Sbjct: 61 KSTLDETFKPFLTGLRLDEIDPVSLAVLRQACYEFEKRVDVPYKVVINEAVNLAKKFGAA 120 Query: 118 DSHKFVNGVLDKAAPVIRPNK 138 DSHKF+NGVLDK A +R ++ Sbjct: 121 DSHKFINGVLDKVALRVRKDE 141 >UniRef50_A9BVN7 N utilization substance protein B homolog n=7 Tax=Comamonadaceae RepID=NUSB_DELAS Length = 212 Score = 142 bits (358), Expect = 4e-33, Method: Composition-based stats. Identities = 51/136 (37%), Positives = 74/136 (54%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 + R RARE A+QALY + ND+ ++ D +++ LL G + L Sbjct: 32 KSNRSRAREFALQALYQHLVGGNDVEAIDRFTRDLSGFHKADSVHYDALLRGCINSQVDL 91 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 D L+ P L R + E+ +E A + I +YE DVP++V +NE IELAK FG D HK+ Sbjct: 92 DALIAPKLDRTMAEISPIEHASMWIGVYEFQHCPDVPWRVVLNECIELAKEFGGTDGHKY 151 Query: 123 VNGVLDKAAPVIRPNK 138 VN VL+ AP +R + Sbjct: 152 VNAVLNGLAPTLRAAE 167 >UniRef50_B0TEI6 N utilization substance protein B homolog n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=NUSB_HELMI Length = 206 Score = 142 bits (358), Expect = 4e-33, Method: Composition-based stats. Identities = 46/136 (33%), Positives = 75/136 (55%), Gaps = 1/136 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +RR+ RE A+Q L+ + + + A E + + + REL+ G N +D Sbjct: 1 MSRRQGRETALQTLFMADVGRMEPAYALQYASEEFGISEAAAAFARELVEGAVANRETID 60 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 G ++ LE + V++ +LR+A++E+ R D+P AINEAIELAK + E+S KF Sbjct: 61 GNIRRLAKEWNLERMPHVDRNLLRVAIFEMLFREDIPLNAAINEAIELAKIYANEESAKF 120 Query: 123 VNGVLDKAAPVIRPNK 138 VNG+L + A +R + Sbjct: 121 VNGILGQLARELREAR 136 >UniRef50_C5TIT6 Transcription antitermination factor NusB n=5 Tax=Neisseriaceae RepID=C5TIT6_NEIFL Length = 142 Score = 141 bits (357), Expect = 5e-33, Method: Composition-based stats. Identities = 55/138 (39%), Positives = 80/138 (57%), Gaps = 1/138 (0%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK + RRRARE AVQA+Y +++ ++ ++D F +L G T+ Sbjct: 1 MK-SPRRRARELAVQAIYQAGINKTAAPEIAKNIHELSQTSNMDEELFNKLFFGTQTHAE 59 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 + P L R ++L +E+AVL +A +ELS + PY V INEAIE+ K+FG D H Sbjct: 60 EYMEKISPLLDRDEKDLSPIERAVLLVACHELSTMPETPYPVIINEAIEVTKTFGGTDGH 119 Query: 121 KFVNGVLDKAAPVIRPNK 138 KFVNG+LD+ A IRP++ Sbjct: 120 KFVNGILDQLASRIRPDE 137 >UniRef50_UPI0001C36EDB sun protein n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C36EDB Length = 443 Score = 141 bits (357), Expect = 6e-33, Method: Composition-based stats. Identities = 35/127 (27%), Positives = 53/127 (41%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R AV+ L S + L D+ D + L GV LD ++ Sbjct: 5 RYTAVKLLDKTFRSGSYSNIQLDAGLKNSDLSPQDKRFCTALYYGVIERKITLDHILTGL 64 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 SR L +L + +LR +Y+L +VP A+NE+++LAK FG + VN VL Sbjct: 65 SSRPLSKLDSIIITILRCGIYQLLYMENVPDNAAVNESVKLAKKFGKTSASGMVNAVLRN 124 Query: 130 AAPVIRP 136 + Sbjct: 125 FIRKGKK 131 >UniRef50_B9L0C6 Transcription antitermination factor NusB n=2 Tax=Thermomicrobia (class) RepID=B9L0C6_THERP Length = 168 Score = 141 bits (357), Expect = 7e-33, Method: Composition-based stats. Identities = 45/134 (33%), Positives = 74/134 (55%), Gaps = 1/134 (0%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 RR+AR A+Q LY ++ + + +V + ++ + Y L+ GV + +D + Sbjct: 34 RRQARILALQILYEVDVANHSLEEVLERHRSQASIAQPVRRYAERLVTGVWADRERIDRM 93 Query: 66 MKPYLSR-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + +++L V++ +LRIA+YEL DVP K AINEA+E+AK +G E S +FVN Sbjct: 94 IAEAAPAFPVDQLPPVDRNILRIAIYELLHEPDVPLKAAINEAVEIAKQYGGESSSRFVN 153 Query: 125 GVLDKAAPVIRPNK 138 GVL A + + Sbjct: 154 GVLGTIAANLASSG 167 >UniRef50_B3EF03 Sun protein n=11 Tax=Chlorobiaceae RepID=B3EF03_CHLL2 Length = 451 Score = 141 bits (356), Expect = 7e-33, Method: Composition-based stats. Identities = 34/125 (27%), Positives = 56/125 (44%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 +RE A++ L + + + ++ L+ + D EL+ GV LD + Sbjct: 9 SRELALKVLQNIESGEKKSGTALHEQLSHTSLNQNDRALATELVNGVLRRRLTLDTFIGR 68 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 Y E+ V K +LRI Y+L +P+ A+NE++ LA+ + E K VN VL Sbjct: 69 YYHHRYEKAAPVLKNILRIGAYQLIYLDRIPHWAAVNESVSLARRYKGEHMAKLVNAVLR 128 Query: 129 KAAPV 133 P Sbjct: 129 NITPE 133 >UniRef50_C8W0Z5 NusB antitermination factor n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W0Z5_DESAS Length = 156 Score = 140 bits (355), Expect = 9e-33, Method: Composition-based stats. Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 1/134 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +RR R+ A+Q L+ ++ D + +A+ + + R+L+ G + +D Sbjct: 1 MSRREGRQIAMQILFQIEVGGIDPEEAFKNTVADSTCPVPIMEFARQLVFGTLGHLKEID 60 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ L+ + V+K ++R+ALYE+ ++P V+ NEAIELAK FG E+S KF Sbjct: 61 RVISEISKGWRLDRIANVDKTLIRMALYEIFYEDNIPLNVSANEAIELAKIFGGEESGKF 120 Query: 123 VNGVLDKAAPVIRP 136 VNG++ K Sbjct: 121 VNGIIGKVVQKPDE 134 >UniRef50_C0EFK3 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EFK3_9CLOT Length = 441 Score = 140 bits (355), Expect = 1e-32, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 1/130 (0%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLM 66 R AR+ A+ AL L+ + D + +L GV LD ++ Sbjct: 4 RTARDLALSALLKMDKQGAYSNLAFDGMLSSSSLSPRDRDFAAKLFYGVLETKITLDYII 63 Query: 67 KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGV 126 Y + E++ + +LR+ LY++ D+ A+NE++ L K G + + FVN + Sbjct: 64 ASYATMKPEKISSDVRNILRLGLYQIKYL-DLEDFAAVNESVNLVKLRGKKSASGFVNAI 122 Query: 127 LDKAAPVIRP 136 L + Sbjct: 123 LRAFLRDGKN 132 >UniRef50_C4KD91 NusB antitermination factor n=1 Tax=Thauera sp. MZ1T RepID=C4KD91_THASP Length = 166 Score = 140 bits (355), Expect = 1e-32, Method: Composition-based stats. Identities = 61/137 (44%), Positives = 81/137 (59%), Gaps = 1/137 (0%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAE-QDVKDVDVLYFRELLAGVATNTAY 61 ARRRARE A+Q +Y W LS N+ V+ +E +++ +D F LL G Sbjct: 21 KMARRRARELALQGVYQWLLSGNNATTVQRHLESETENLDKIDRELFVSLLRGATGAADE 80 Query: 62 LDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 L G +P LSR + EL +E A+L + +EL D PY+V INEAIELAK +G D HK Sbjct: 81 LRGCFEPLLSRPVAELSPIEHAILLLGTHELRHNLDTPYRVVINEAIELAKGYGGTDGHK 140 Query: 122 FVNGVLDKAAPVIRPNK 138 FVNGVLDK + +RP + Sbjct: 141 FVNGVLDKLSTRLRPEE 157 >UniRef50_Q3JCY0 N utilization substance protein B homolog n=2 Tax=Nitrosococcus oceani RepID=NUSB_NITOC Length = 148 Score = 140 bits (355), Expect = 1e-32, Method: Composition-based stats. Identities = 60/136 (44%), Positives = 87/136 (63%), Gaps = 1/136 (0%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 R +AR A+Q LY WQL D+ ++ +F+ + D++ +D YF+ELL GV L Sbjct: 2 SNRRSKARTAALQGLYQWQLMGQDVDKIDIEFIVQ-DIRGIDHAYFQELLRGVPQRQGEL 60 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 D + P+L R + E+ VE A+LRI +EL R ++PY+V +NEAIELAK FGAE H++ Sbjct: 61 DECLGPFLDRPINEVDPVECAILRIGAFELLCRPEIPYRVVLNEAIELAKRFGAEHGHRY 120 Query: 123 VNGVLDKAAPVIRPNK 138 VNG+LDK A +R + Sbjct: 121 VNGILDKVAQKVRATE 136 >UniRef50_D2LH50 NusB antitermination factor n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LH50_RHOVA Length = 185 Score = 140 bits (354), Expect = 1e-32, Method: Composition-based stats. Identities = 49/141 (34%), Positives = 78/141 (55%), Gaps = 7/141 (4%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAE-----QDVKDVDVLYFRELLAGVATNT 59 R RAR AVQALY +++Q D++ V +FL + D +FR+++ G+A Sbjct: 20 PRTRARLAAVQALYQMEMTQRDLSLVLQEFLGRRFETVEIYAGADRSFFRDIVEGIARGQ 79 Query: 60 AYLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 A +D + +L+ L + + +A+LR +YEL+ R+DVP + INE +E+AK F Sbjct: 80 AKIDLEIAAHLASGWKLSRIDSILRAILRSGVYELTDRNDVPARAVINEYVEIAKDFFGG 139 Query: 118 DSHKFVNGVLDKAAPVIRPNK 138 + VNGVLD+ A R + Sbjct: 140 EEPGVVNGVLDRVARAKRSRE 160 >UniRef50_A6NUS8 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NUS8_9BACE Length = 447 Score = 140 bits (354), Expect = 1e-32, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 1/134 (0%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 P+ + ARE A+ AL + + + L E + D L GV N L Sbjct: 2 PSTDQTARETALLALSACERQGAWSDGFLKKTLREAGLDSRDAALATRLCFGVLQNRLLL 61 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG-AEDSHK 121 D + + + E++ + LR+ +Y+++ + +P+ A+NE++EL K + Sbjct: 62 DFYIGKFSTTRPEKMEIKVRNALRLGVYQMAFMTKIPHNAAVNESVELTKKHCKNPRAAG 121 Query: 122 FVNGVLDKAAPVIR 135 VNGVL + I Sbjct: 122 MVNGVLRNVSRNID 135 >UniRef50_D0L1W4 NusB antitermination factor n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L1W4_HALNC Length = 196 Score = 140 bits (354), Expect = 1e-32, Method: Composition-based stats. Identities = 59/140 (42%), Positives = 89/140 (63%), Gaps = 3/140 (2%) Query: 2 KPAARRR---ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATN 58 KP+ ++R ARE AVQALY L+ + ++ QF+ + + VD+ FR ++ GV+ N Sbjct: 54 KPSPKKRWRWARERAVQALYQQILNHTPVDLLDAQFMEDAFMLKVDLELFRRIVRGVSAN 113 Query: 59 TAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 LD P L R L E+ +E+A+LR+ +EL ++P VAINEA+E+AK +GA + Sbjct: 114 EESLDEAYSPLLDRPLAEIDPIEQAILRLGAFELIHTPEIPRAVAINEAVEMAKLYGATE 173 Query: 119 SHKFVNGVLDKAAPVIRPNK 138 SHK++NGVLDK A +R N+ Sbjct: 174 SHKYINGVLDKLADRVRLNE 193 >UniRef50_C6X9V7 NusB antitermination factor n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6X9V7_METSD Length = 158 Score = 140 bits (354), Expect = 1e-32, Method: Composition-based stats. Identities = 51/134 (38%), Positives = 77/134 (57%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 RR++RE A++ +Y ++Q D + + E + D Y R+LL GV LD Sbjct: 19 NRRKSRELALKGIYRNLMNQADFRAILRELADEPEFDKADQEYLRKLLDGVLAEREELDR 78 Query: 65 LMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + ++ R ++EL +E +L ++ YEL +PY+VAINE +ELAK +G D HK+VN Sbjct: 79 RIAVFVDRPMQELSPIEHGILCLSAYELIFDLSIPYRVAINEGVELAKIYGGTDGHKYVN 138 Query: 125 GVLDKAAPVIRPNK 138 GVLDK A RP + Sbjct: 139 GVLDKLAAEARPGE 152 >UniRef50_UPI0001C335A0 ribosomal RNA small subunit methyltransferase RsmB n=3 Tax=Cyanobacteria RepID=UPI0001C335A0 Length = 453 Score = 140 bits (354), Expect = 1e-32, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 57/137 (41%), Gaps = 3/137 (2%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK + AR+ ++ L + + I ++ D EL+ G+ Sbjct: 1 MKVSN---ARQLVLKILREIDKNNSFINISLDSAFKHNELSRQDRGLCTELVYGIIRCQR 57 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD L+ ++ ++ V + +L I LY+L VP A+N +++LAK+ Sbjct: 58 TLDSLIDQLGNKKSQKQSPVLRRILHIGLYQLLYLDHVPLSAAVNTSVDLAKNNNLNVLS 117 Query: 121 KFVNGVLDKAAPVIRPN 137 K VN +L + V + Sbjct: 118 KVVNAILREYIRVKKKE 134 >UniRef50_B1YIQ1 Sun protein n=2 Tax=Exiguobacterium RepID=B1YIQ1_EXIS2 Length = 446 Score = 140 bits (353), Expect = 2e-32, Method: Composition-based stats. Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 1/130 (0%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 R+ AV L +Q L ++ + DV + EL+ G + LD +++ Sbjct: 2 NVRDAAVTTLLKIGQGGAFSTISVHQMLEKRAISKADVGLYTELVYGTLSRELTLDYILE 61 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 P+L++ ++L + +LR+++Y+L +P INEA+E+AK+ G K VNGVL Sbjct: 62 PFLTKQ-KKLDPFMRPLLRMSVYQLFYLDRIPDHAVINEAVEIAKTRGKPHIAKVVNGVL 120 Query: 128 DKAAPVIRPN 137 +P+ Sbjct: 121 RNVLRTGKPD 130 >UniRef50_C0N8C8 Transcription antitermination factor NusB n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N8C8_9GAMM Length = 150 Score = 140 bits (353), Expect = 2e-32, Method: Composition-based stats. Identities = 50/134 (37%), Positives = 75/134 (55%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 R +AR AVQALY ++ +F+ + +D YF L+ G +D Sbjct: 6 PRTKARRAAVQALYQALVNNETPQKAGLEFVTAEYADKIDRKYFTTLIEGTIKYQQAIDA 65 Query: 65 LMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + + R L + VE +VLR+A++E ++PY+V +NEA+ELAKSFG E HK+VN Sbjct: 66 ELSEAVDRDLNAVDPVEISVLRLAVFEFMHLPEIPYRVVLNEAVELAKSFGGEQGHKYVN 125 Query: 125 GVLDKAAPVIRPNK 138 GVLDK +RP++ Sbjct: 126 GVLDKMGARLRPHE 139 >UniRef50_Q67NA9 N utilization substance protein B homolog n=2 Tax=Clostridiales RepID=NUSB_SYMTH Length = 153 Score = 140 bits (353), Expect = 2e-32, Method: Composition-based stats. Identities = 45/141 (31%), Positives = 74/141 (52%), Gaps = 9/141 (6%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQ--------DVKDVDVLYFRELLAGV 55 +RR+ARE A+QAL+ ++ D Q L + +++ + R L+ G Sbjct: 1 MSRRKARELALQALFQMDIAGTDPDTAVAQALTRETEPDWAPDRLEEESAEFARRLVRGA 60 Query: 56 ATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 + D L+ Y +E + V++A+LR+A+YE+ DVP VA+ EA+ELAK+F Sbjct: 61 WQHREESDRLIAQYARGWRVERMAAVDRAILRMAVYEIVHSEDVPDSVAVAEAVELAKTF 120 Query: 115 GAEDSHKFVNGVLDKAAPVIR 135 DS +FVNG+L ++ Sbjct: 121 STADSSRFVNGILGSVIRGMK 141 >UniRef50_B8FJ78 N utilization substance protein B homolog n=2 Tax=Desulfobacteraceae RepID=NUSB_DESAA Length = 143 Score = 140 bits (353), Expect = 2e-32, Method: Composition-based stats. Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 1/137 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 RRRARE A+Q+L+ + + F +F EL GV N +D Sbjct: 2 GKRRRARELALQSLFYVDSTSAPPLEALDLFCQNFPPPKDLAQFFYELAKGVINNQDEID 61 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 L++ + + L + V+ ++RIA YE DVP +V+INEAI++ K FG +S F Sbjct: 62 RLIEQHSNNWKLYRMSAVDLNLMRIAAYEFLFCPDVPRRVSINEAIDIGKRFGTAESGAF 121 Query: 123 VNGVLDKAAPVIRPNKK 139 +NG+LD + +K Sbjct: 122 INGILDSIHLHLGKEEK 138 >UniRef50_B0UU23 N utilization substance protein B homolog n=33 Tax=Gammaproteobacteria RepID=NUSB_HAES2 Length = 144 Score = 140 bits (353), Expect = 2e-32, Method: Composition-based stats. Identities = 70/132 (53%), Positives = 91/132 (68%), Gaps = 2/132 (1%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFL--AEQDVKDVDVLYFRELLAGVATNT 59 K + RRRARECAVQ LYSW +S+N ++E F+ + ++K VD+ YFR+L + Sbjct: 7 KISPRRRARECAVQNLYSWAISKNSPEEIELNFIVDQDNEMKGVDMPYFRKLFHQTINHV 66 Query: 60 AYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D M PYL R EL +E A+LR+A+YEL DVPYKV INEAIE+AK FGAE+S Sbjct: 67 ETIDSTMAPYLDRDNVELDPIECAILRLAVYELKFELDVPYKVVINEAIEVAKVFGAEES 126 Query: 120 HKFVNGVLDKAA 131 HK++NGVLDK A Sbjct: 127 HKYINGVLDKIA 138 >UniRef50_Q1PUX1 Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PUX1_9BACT Length = 422 Score = 140 bits (353), Expect = 2e-32, Method: Composition-based stats. Identities = 48/140 (34%), Positives = 73/140 (52%), Gaps = 3/140 (2%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 M+ R ARE A++ALY L + +F + K + L+ G ++ Sbjct: 1 MR--NRTIARELAIKALYQLDLLGDKAETEIDEFCRQNAEKPDIYKFALLLVTGCRSHVK 58 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D + L + ++K +LR+ +YEL R D+P KV+INEAIELAK FG +DS Sbjct: 59 EIDERISLSAENWDLHRMAVIDKNILRLGVYELLYRDDIPPKVSINEAIELAKKFGDKDS 118 Query: 120 HKFVNGVLDKAAPVIRPNKK 139 FVNG+LDK ++ K+ Sbjct: 119 GMFVNGILDKVYNWLKNGKQ 138 >UniRef50_Q479L3 N utilization substance protein B homolog n=3 Tax=Betaproteobacteria RepID=NUSB_DECAR Length = 163 Score = 140 bits (353), Expect = 2e-32, Method: Composition-based stats. Identities = 53/136 (38%), Positives = 77/136 (56%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 +ARRRARE +Q LY W++ D A +E + D +F L GV + L Sbjct: 19 KSARRRAREFVLQGLYQWRVGGADEASIEAYAPEMEGFAKADREFFVGTLRGVISQQEKL 78 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + ++ R EL VE +L + +E+ ++ PY+V INEAIEL K+FG D HK+ Sbjct: 79 IEQVSTHIDRPFNELSPVEACILMLGSFEMLNHAETPYRVIINEAIELTKAFGGTDGHKY 138 Query: 123 VNGVLDKAAPVIRPNK 138 VNGVLDK A ++RP++ Sbjct: 139 VNGVLDKVAAILRPDE 154 >UniRef50_Q5X720 N utilization substance protein B homolog n=6 Tax=Legionella RepID=NUSB_LEGPA Length = 147 Score = 139 bits (352), Expect = 2e-32, Method: Composition-based stats. Identities = 52/133 (39%), Positives = 83/133 (62%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 +RRAR+ A+QALY W +S D+ ++E QF ++ VD YF LL G+ T+ L+ Sbjct: 9 KRRARKFALQALYQWLMSGTDLHEIEAQFRTINNMDKVDGEYFCRLLYGIPTHVEALEAS 68 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 + PYL R + L +E VLRI +EL ++PYKV ++E++ L K FG+++ +++VNG Sbjct: 69 LLPYLDREINALNPIELTVLRIGSFELFHCPEIPYKVILDESVSLTKEFGSQEGYRYVNG 128 Query: 126 VLDKAAPVIRPNK 138 VL+ A +R + Sbjct: 129 VLNNLAKQVRSVE 141 >UniRef50_B3U4H5 Transcription antitermination protein n=1 Tax=Candidatus Nitrospira defluvii RepID=B3U4H5_9BACT Length = 157 Score = 139 bits (352), Expect = 2e-32, Method: Composition-based stats. Identities = 49/138 (35%), Positives = 76/138 (55%), Gaps = 3/138 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 A+R +ARE AVQ L+ + + F + + + ++ L+AGV N LD Sbjct: 2 ASRHQARERAVQILFQYDIHGQ-AGPWLDDFWIQYPLAEELRVFAERLVAGVRANKKELD 60 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 L+ Y + + + +++ +LR+ +EL +VP KV +NEAIELAKSFG E++ KF Sbjct: 61 ALIGTYATNWKVSRMPIIDRNILRMGCFELLHVPEVPAKVTLNEAIELAKSFGDEEASKF 120 Query: 123 VNGVLDKAA-PVIRPNKK 139 VNG+LDK R +K Sbjct: 121 VNGILDKLLGSDARLERK 138 >UniRef50_B8D9P0 N utilization substance protein B homolog n=5 Tax=Buchnera aphidicola RepID=NUSB_BUCA5 Length = 143 Score = 139 bits (352), Expect = 2e-32, Method: Composition-based stats. Identities = 80/139 (57%), Positives = 108/139 (77%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MKP+ RR+AR CA+Q LYSW++S N+I + FL E++ K++D++YF EL+ G+ + Sbjct: 1 MKPSFRRKARACALQVLYSWEISHNNIKESAIYFLKEKNKKNIDIVYFYELIIGITYDCK 60 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D LMKPYL R L+ELG +E+A+LRI+ YEL KR+D+PYKV+INE IELAK FG+EDSH Sbjct: 61 NIDNLMKPYLFRSLKELGHIERAILRISFYELHKRNDIPYKVSINEGIELAKLFGSEDSH 120 Query: 121 KFVNGVLDKAAPVIRPNKK 139 KF+NGVLDKA + NKK Sbjct: 121 KFINGVLDKAVFKMGYNKK 139 >UniRef50_Q2BM00 NusB protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BM00_9GAMM Length = 159 Score = 139 bits (352), Expect = 2e-32, Method: Composition-based stats. Identities = 69/136 (50%), Positives = 92/136 (67%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 RR AR A+QALYSW L+ + ++E QF + D++D D+ F ELL +A + L Sbjct: 17 TTQRRNARSYALQALYSWTLAGQPLNELEAQFRVDNDMRDTDIRLFSELLHSIAGGKSEL 76 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 D L +L R ++EL +E VLRI YELSKR +VPY+VAINE++ELAK+FGA DSHK+ Sbjct: 77 DQLYTDFLDRNVDELDPIELNVLRIGAYELSKRFEVPYRVAINESVELAKTFGATDSHKY 136 Query: 123 VNGVLDKAAPVIRPNK 138 VNGVLDK A +R + Sbjct: 137 VNGVLDKLAQRVRMAE 152 >UniRef50_P94464 Ribosomal RNA small subunit methyltransferase B n=24 Tax=Bacillales RepID=RSMB_BACSU Length = 447 Score = 139 bits (352), Expect = 2e-32, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 65/134 (48%), Gaps = 4/134 (2%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK + R+ A++AL + +Q + + ++ D + EL+ G N Sbjct: 1 MKKTS---VRDIALEALIKLEQNQAYSNLLLKSVIKSNELSDQNRGLLTELVYGTLQNKI 57 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD ++KP++++ + +LR++LY++ +P + AI+EA+E+AK G + Sbjct: 58 ALDYMLKPFINKPQKVK-PWVIQLLRLSLYQMEYLEKIPDRAAIHEAVEIAKIRGHKGIA 116 Query: 121 KFVNGVLDKAAPVI 134 FVNGVL Sbjct: 117 SFVNGVLRSIQREG 130 >UniRef50_A8PLC7 Transcription antitermination factor NusB n=1 Tax=Rickettsiella grylli RepID=A8PLC7_9COXI Length = 148 Score = 139 bits (352), Expect = 3e-32, Method: Composition-based stats. Identities = 60/132 (45%), Positives = 90/132 (68%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 A++RAR AVQA+Y WQL+Q + ++ +FLA++++K VD YF ++ G+ + LD Sbjct: 12 AKQRARRFAVQAIYQWQLTQETFSVIQTKFLAQEEMKSVDTAYFTLIVQGILNDHELLDR 71 Query: 65 LMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 ++ ++ R L +L VE A+LR+ YEL S++PYKV +NEAIELAK FGA DS+K+VN Sbjct: 72 YLQSFVDRPLCQLDCVEWAILRLGTYELLNCSEIPYKVILNEAIELAKMFGATDSYKYVN 131 Query: 125 GVLDKAAPVIRP 136 G+L + A R Sbjct: 132 GILHRIAEKNRA 143 >UniRef50_A0LEK0 Sun protein n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LEK0_SYNFM Length = 449 Score = 139 bits (351), Expect = 3e-32, Method: Composition-based stats. Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 1/127 (0%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFL-AEQDVKDVDVLYFRELLAGVATNTAYLDGLM 66 AR A Q L + + L + +++ D EL+ GV LD + Sbjct: 3 NARVLAFQILLHMDRDASHPDRLIRGMLGRHERLEERDRALLTELVYGVLRWQGRLDWHI 62 Query: 67 KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGV 126 E++ + +LR+ALY++ +P A+NEA+ +AK+ KFVNGV Sbjct: 63 DQLSRTRPEKIDPAVRILLRLALYQILMLDRIPDHAAVNEAVNMAKTTQPAYLVKFVNGV 122 Query: 127 LDKAAPV 133 L +A Sbjct: 123 LREALRR 129 >UniRef50_P72943 Ribosomal RNA small subunit methyltransferase B n=4 Tax=Chroococcales RepID=RSMB_SYNY3 Length = 446 Score = 139 bits (351), Expect = 3e-32, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 55/130 (42%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR+ A L + + L + + D + EL+ GV LD L++ Sbjct: 4 ARQLAFLILRDINRRDSYTDVAIDRALQKHPLSPPDRRFCTELVYGVVRRQRTLDCLIEQ 63 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 R + + + ++++ LY+L VP A+N ++LAK+ G + K VNG+L Sbjct: 64 LGDRPIGKQPPDLRRIVQLGLYQLRYLDQVPASAAVNTGVDLAKANGLKGLSKVVNGMLR 123 Query: 129 KAAPVIRPNK 138 + K Sbjct: 124 RYQRAEEQGK 133 >UniRef50_B0S1M1 N utilization substance protein B homolog n=2 Tax=Finegoldia magna RepID=NUSB_FINM2 Length = 137 Score = 139 bits (351), Expect = 3e-32, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 70/134 (52%), Gaps = 1/134 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +RR++R+ A+Q +Y ++ + +F Q++ D+ +F+E++ + + Sbjct: 1 MSRRQSRKSAMQLIYEMNMNGDYDKQRIEEFCKYQNINKNDIEFFKEIVLNFIEHIDDIV 60 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 +++ + L+ + +++ ++L++ + E+ P VAINEA+ELAK + E S+ F Sbjct: 61 NIIENNTKQWNLDRINKLDLSILQVGVCEILYVESTPDSVAINEAVELAKEYSTEKSYSF 120 Query: 123 VNGVLDKAAPVIRP 136 +NG+L Sbjct: 121 INGILGSVLKRKEN 134 >UniRef50_C0WD86 SUN protein n=1 Tax=Acidaminococcus sp. D21 RepID=C0WD86_9FIRM Length = 445 Score = 139 bits (351), Expect = 3e-32, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 52/123 (42%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 RE A+ L + L + +D EL+ G T LD + Sbjct: 8 RELALLVLDEIYERGAYANLALNKALRGNGLSSLDRKLCTELVYGTVKTTGTLDWYLCRV 67 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 ++R ++ + +LR+ Y++ +P A+NE LA+ + E+S K VNGVL + Sbjct: 68 INRPFRKMAPRLRTILRMGAYQILYLERIPDSAAVNECANLARYYVNENSVKLVNGVLRQ 127 Query: 130 AAP 132 + Sbjct: 128 LSR 130 >UniRef50_C6WU13 NusB antitermination factor n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WU13_METML Length = 178 Score = 138 bits (350), Expect = 4e-32, Method: Composition-based stats. Identities = 55/134 (41%), Positives = 79/134 (58%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 RR++RE ++A+Y L+ ++++ V + D D YF+ LL V N +DG Sbjct: 39 NRRKSRELVLKAVYRGMLNDSELSQVFRDMRDDPDYNKADEAYFKHLLQAVTENLTAIDG 98 Query: 65 LMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + ++ R LEEL VE A+LRIA EL +PY+V INE +ELAK FG D HK++N Sbjct: 99 KIVGFIDRTLEELSPVEHAILRIAGCELMFDLSIPYRVVINEGVELAKVFGGTDGHKYIN 158 Query: 125 GVLDKAAPVIRPNK 138 GVLDK A +R + Sbjct: 159 GVLDKFAADVRAAE 172 >UniRef50_A8RWU3 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=A8RWU3_9CLOT Length = 455 Score = 138 bits (350), Expect = 4e-32, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 49/128 (38%), Gaps = 1/128 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNTAYLDGLMKP 68 RE + L + V Q L + + D + + G +D ++ Sbjct: 12 REIVLDILTEVLEQGAFVHLVLNQALQKYQYLGKADRSFITRAVEGTLEYLIQIDEVINR 71 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 Y + ++ +++LR+++Y++ VP NEA+++A FVNGVL Sbjct: 72 YSKTKINKMKPFIRSLLRMSVYQILYMDRVPDSAVCNEAVKMAVKRHFSGLKGFVNGVLR 131 Query: 129 KAAPVIRP 136 + Sbjct: 132 TISREKEN 139 >UniRef50_B1HQE5 Ribosomal RNA small subunit methyltransferase B n=5 Tax=Bacillaceae RepID=B1HQE5_LYSSC Length = 453 Score = 138 bits (349), Expect = 4e-32, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 3/127 (2%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 R+ A+ L + +Q + + + ++ D EL G + LD ++ Sbjct: 12 NVRDAALSILLAVDKNQAYSNLLLNETIKRHKIEAKDRALLTELTYGTLQHKMTLDYYLE 71 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 P++ + + +LRI+LY++ + +P A+NEA+E+AK G VNG+L Sbjct: 72 PFIRG---SIDHWVRWLLRISLYQMQYLTRIPAHAAVNEAVEIAKRRGHRGIASTVNGIL 128 Query: 128 DKAAPVI 134 Sbjct: 129 RSVLRQG 135 >UniRef50_C4FT85 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FT85_9FIRM Length = 457 Score = 138 bits (349), Expect = 4e-32, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 2/128 (1%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 + R A+Q L + + L++ ++K VD L+ G + LD Sbjct: 12 KHNVRFQALQLLVEIDWHDQYSNVLLNRALSQSELKPVDQGLLVNLVYGSIQHRLTLDFY 71 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 ++P++ ++L +++LR+ Y++ +P AINEA+ +AK G VNG Sbjct: 72 LEPFIKG--KKLEPWIRSLLRMTAYQMLYLERIPDHAAINEAVNIAKLNGHAGLAGLVNG 129 Query: 126 VLDKAAPV 133 VL Sbjct: 130 VLRNFRRQ 137 >UniRef50_C0GMV1 NusB antitermination factor n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GMV1_9DELT Length = 157 Score = 138 bits (349), Expect = 5e-32, Method: Composition-based stats. Identities = 52/140 (37%), Positives = 75/140 (53%), Gaps = 4/140 (2%) Query: 3 PAARRRARECAVQALYSW--QLSQNDIADVEYQFLAEQDVK-DVDVLYFRELLAGVATNT 59 +R RE A Q LYS + I D + F +QD D+ Y +L+ GV N Sbjct: 11 THSRHAQREFAFQVLYSLHFDQTGTHILDTFHHFKNDQDTAVQQDMSYALQLINGVRENL 70 Query: 60 AYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 LD + + ++ + VE ++R+A+YE+ R D+P KV INEAIELAK+FG + Sbjct: 71 EELDAAIGRHSQNWKVKRIAMVELTIMRLAVYEMIYREDIPVKVGINEAIELAKTFGDNN 130 Query: 119 SHKFVNGVLDKAAPVIRPNK 138 S FVNG+LD A +R + Sbjct: 131 SRNFVNGILDAVARDMRHGE 150 >UniRef50_C5EIZ3 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=C5EIZ3_9FIRM Length = 447 Score = 138 bits (349), Expect = 5e-32, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 49/126 (38%), Gaps = 1/126 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNTAYLDGLMKP 68 R + L + + V Q L + + D + + G +D ++ Sbjct: 13 RGIVLDILSEVLDKGSFVHLVLNQALQKYQYLDKSDRAFITRVTEGTLEYLLQIDHIINK 72 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 Y +++ + + +LR+++Y++ VP NEA++LA FVNGVL Sbjct: 73 YSRTKTDKMKPLIRNLLRMSVYQILYMDRVPDSAVCNEAVKLAVKRRFTGLKGFVNGVLR 132 Query: 129 KAAPVI 134 + Sbjct: 133 TISREK 138 >UniRef50_A5FQ51 N utilization substance protein B homolog n=5 Tax=Dehalococcoides RepID=NUSB_DEHSB Length = 143 Score = 138 bits (349), Expect = 5e-32, Method: Composition-based stats. Identities = 49/133 (36%), Positives = 79/133 (59%), Gaps = 1/133 (0%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 +RR+ARE +QALY L+ ++ DV + L E + +V + L V + L Sbjct: 2 TTSRRKAREIVLQALYEQDLAGHNAEDVLKRLLTENPQTEENVEFIFRLTNAVVKHKDLL 61 Query: 63 DGLMKPY-LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D ++ + + +E+L +++ VLR+A++E+ +DVP KVAINEA+ELAKSFG S + Sbjct: 62 DENIRQFASAWPVEQLSYIDRNVLRLAIFEIIHENDVPVKVAINEAVELAKSFGGNSSAR 121 Query: 122 FVNGVLDKAAPVI 134 F+NGVL + + Sbjct: 122 FINGVLSSVSKAL 134 >UniRef50_B8FQ61 N utilization substance protein B homolog n=2 Tax=Desulfitobacterium hafniense RepID=NUSB_DESHD Length = 148 Score = 138 bits (348), Expect = 7e-32, Method: Composition-based stats. Identities = 46/140 (32%), Positives = 81/140 (57%), Gaps = 4/140 (2%) Query: 4 AARRRARECAVQALYSWQLSQN--DIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 +RR ARE A+Q L+ +++ D+ +++ E V + + + EL G T+ Sbjct: 1 MSRRLARETALQVLFQLEMTGESQDLKSAIHKWADEFAVPEGSIPFAEELAEGTLTHKEV 60 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D ++ L + V++ +LR+A YE+ R D+P +V INEAIE+AK +G+E+S Sbjct: 61 IDENLEKLSEGWSLARMANVDRNLLRLASYEILFRKDIPGRVTINEAIEIAKRYGSEESG 120 Query: 121 KFVNGVLDKAAPVI-RPNKK 139 KF+NG+LDK + + ++K Sbjct: 121 KFINGILDKVVESVNKKDEK 140 >UniRef50_Q1N2N9 Transcription antitermination protein NusB n=1 Tax=Bermanella marisrubri RepID=Q1N2N9_9GAMM Length = 128 Score = 138 bits (348), Expect = 7e-32, Method: Composition-based stats. Identities = 59/125 (47%), Positives = 85/125 (68%) Query: 14 VQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL 73 +QALY W L+ ++++E +FL + D+ VD YFR++L GV LD + P LSR Sbjct: 1 MQALYQWDLAGASLSNIEAEFLTDNDMSKVDTEYFRDILRGVPRELDDLDEKLAPCLSRN 60 Query: 74 LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPV 133 ++E+ VE+A+LR+ YEL R DVPY+V INE++EL+K FGA +SHKF+NG LDK A Sbjct: 61 MQEVTPVERAILRLGAYELLHRIDVPYRVVINESVELSKKFGANESHKFINGALDKLAQA 120 Query: 134 IRPNK 138 +R + Sbjct: 121 VRVVE 125 >UniRef50_C8WW78 Sun protein n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WW78_ALIAD Length = 451 Score = 138 bits (348), Expect = 7e-32, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 1/131 (0%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 R A QAL + + + LA V + D E+ G LD L+ Sbjct: 4 EGRRRAYQALIRVERDGAFLNAALQEALAGAGVDERDRALATEIAYGTLRRQITLDRLLS 63 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 P + R + +L + +LR+ Y+++ + VP A N+A+ELAK + VN VL Sbjct: 64 PLVRRPMSKLDPEVRVILRMGAYQMTWLNRVPAYAAANDAVELAKRHR-PQAAALVNAVL 122 Query: 128 DKAAPVIRPNK 138 + A + + Sbjct: 123 RRYAERAQDWE 133 >UniRef50_Q2RIA9 N utilization substance protein B homolog n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=NUSB_MOOTA Length = 145 Score = 137 bits (347), Expect = 9e-32, Method: Composition-based stats. Identities = 47/137 (34%), Positives = 77/137 (56%), Gaps = 1/137 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 RR AR A+QAL++ + Q L E ++ + + REL+ G +D Sbjct: 1 MLRRAARAKALQALFAIDVGGTSPDMALEQVLEEGELPPRAMTFTRELVEGTMAKRDAID 60 Query: 64 GLMKPY-LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 +++ Y + LE L V++ +LR+ALYE+ + P +V INEAIELAK+F E++ +F Sbjct: 61 AIIRKYAVGWRLERLAAVDRNILRMALYEMQYHRETPVRVVINEAIELAKNFNNEEAGRF 120 Query: 123 VNGVLDKAAPVIRPNKK 139 VNG+LD A + +++ Sbjct: 121 VNGLLDNARKDLGLSEE 137 >UniRef50_A0L3Z8 NusB antitermination factor n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L3Z8_MAGSM Length = 165 Score = 137 bits (345), Expect = 1e-31, Method: Composition-based stats. Identities = 47/138 (34%), Positives = 79/138 (57%), Gaps = 1/138 (0%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 M+ R ++RE A+Q LY +++ + + L + + +D YF +L GV Sbjct: 15 MRRGGRSKSREIALQVLYGCEIAHDPVGPALRNMLEDPHSEGMDQDYFSQLTLGVEAERE 74 Query: 61 YLDGLMKPY-LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 LD + + ++ V+ +LR+ +YEL K+ +VP++V +NEAIEL+K FG E+S Sbjct: 75 VLDSWIGRAGAAWSMDRFSVVDHNILRLGIYELLKQPEVPHRVILNEAIELSKRFGGEES 134 Query: 120 HKFVNGVLDKAAPVIRPN 137 +FVNGV+DK A ++R Sbjct: 135 SRFVNGVMDKVANLVREE 152 >UniRef50_Q1ISD3 N utilization substance protein B homolog n=2 Tax=Acidobacteria RepID=NUSB_ACIBL Length = 146 Score = 137 bits (345), Expect = 2e-31, Method: Composition-based stats. Identities = 38/140 (27%), Positives = 70/140 (50%), Gaps = 2/140 (1%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFL-AEQDVKDVDVLYFRELLAGVATNTA 60 K RR++RE A+Q L+ + + VE F +D+++ + +L + Sbjct: 4 KTGTRRKSRELALQMLFQMDMGKQSADHVEKTFWAERKDLEEEVRSFAIDLFHVAEKRSE 63 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D L++ + +E + V++ +LR A E P V INE++E+A+ F + +S Sbjct: 64 EIDKLIEKHAEHWRMERMAAVDRNILRGACAEFMGFPKTPKPVVINESLEIARRFSSPES 123 Query: 120 HKFVNGVLDKAAPVIRPNKK 139 +F+NGVLD A + +K Sbjct: 124 VQFINGVLDSVARELDAERK 143 >UniRef50_D0BMY2 Ribosomal RNA small subunit methyltransferase B n=2 Tax=Granulicatella RepID=D0BMY2_9LACT Length = 441 Score = 136 bits (344), Expect = 2e-31, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 2/133 (1%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 + R V L + Q+ + + +Q D EL G +D + Sbjct: 3 KVRNAVVDLLVQVEQDQSYSTISLKKVIEQQKWTAKDKGLLTELFYGTIQRKMTIDFYLA 62 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 PY+ + +++ K +LRI++Y++ +P AI EA+++AK G + KFVNGVL Sbjct: 63 PYIQKA-KKIQPWVKQLLRISIYQMVFLDKIPDHAAIFEAVQIAKKRGHQGIAKFVNGVL 121 Query: 128 DKAAP-VIRPNKK 139 +R ++ Sbjct: 122 RNFQRNDLRSFEE 134 >UniRef50_C1DB31 N utilization substance protein B homolog n=3 Tax=Neisseriaceae RepID=NUSB_LARHH Length = 165 Score = 136 bits (344), Expect = 2e-31, Method: Composition-based stats. Identities = 58/138 (42%), Positives = 83/138 (60%), Gaps = 1/138 (0%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK RRRARE AVQ +Y WQL+ A +E + D FR LL GV + Sbjct: 1 MKT-PRRRAREFAVQGIYQWQLNALTPATIEKNLRDNEQFAKADEALFRTLLYGVLNDPV 59 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 ++ + + R E++ VE+AVL +A +EL+++++ P V INEAIE+AK+FG + H Sbjct: 60 RIESAIASHFERAPEDVSPVERAVLLMAAFELTQQAETPLAVIINEAIEIAKTFGGAEGH 119 Query: 121 KFVNGVLDKAAPVIRPNK 138 +FVNGVLDK A +RP + Sbjct: 120 RFVNGVLDKYAAEVRPEE 137 >UniRef50_B9M341 Sun protein n=4 Tax=Geobacter RepID=B9M341_GEOSF Length = 448 Score = 136 bits (343), Expect = 2e-31, Method: Composition-based stats. Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 1/130 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 + R A + L ++ + + L+ ++ D EL+ GV A LD Sbjct: 1 MSSSNPRSAAFEILLRIDKERSYADILIDRELSAGALQGPDRGLLTELVYGVLRRQATLD 60 Query: 64 GLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 +++ + S+ LE L + +LRI LY++ VP A+NE ++LAK + F+ Sbjct: 61 HIIRRFSSQRLERLERSVLLLLRIGLYQMFYLDRVPVSAAVNETVKLAKVLV-PRASGFI 119 Query: 124 NGVLDKAAPV 133 N VL A Sbjct: 120 NAVLRNADRE 129 >UniRef50_C6PE58 NusB/RsmB/TIM44 protein n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PE58_CLOTS Length = 199 Score = 136 bits (343), Expect = 2e-31, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 57/124 (45%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R A + LY + + V ++L ++DV+ + +E++ G LD ++ Sbjct: 4 RNIAFKILYEILVKKGYSNIVLNKYLNNDGIEDVEKSFIKEIVFGTIERKYTLDRIIDYC 63 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 ++ ++++ +L + L++L VP AINE++ L K + + KFVN VL Sbjct: 64 STKDIKKIDNKVLIILEMGLFQLMYMDKVPDYAAINESVNLTKEHVGKYASKFVNAVLRS 123 Query: 130 AAPV 133 Sbjct: 124 YLRN 127 >UniRef50_B2A2K5 Sun protein n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A2K5_NATTJ Length = 462 Score = 136 bits (343), Expect = 3e-31, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 50/135 (37%), Gaps = 3/135 (2%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK + +RE A A Q V Q L + D+ D + G Sbjct: 1 MKIKS---SRELAFVAYTRIIQDQAYSNLVLNQLLGKTDLLAQDKALASRITYGTLQWQG 57 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D +K R L +L +LR+ Y++ VP ++NE +++A + Sbjct: 58 LIDYYLKTLSHRPLSKLSNKALFLLRMGAYQILFLDRVPPSASVNETVKVAHRRTHKGIA 117 Query: 121 KFVNGVLDKAAPVIR 135 FVNG+L Sbjct: 118 NFVNGILRNLIRKKD 132 >UniRef50_C9RZP8 Sun protein n=5 Tax=Bacillales RepID=C9RZP8_GEOSY Length = 444 Score = 136 bits (343), Expect = 3e-31, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 52/129 (40%), Gaps = 1/129 (0%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 RE A+ L + + + + + + D E++ G LD + Sbjct: 2 NVRELALDTLLAIEQKGAYSHLQLNEAIQKGRLDGRDAALLTEIVYGTVQRRDTLDYYLA 61 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 P+L R L + +LR+ LY++ VP + A+ EA+E+AK G VNGVL Sbjct: 62 PFL-RKARRLEPWVRVLLRLTLYQMVYLDRVPDRAAVFEAVEIAKRRGHRGIASLVNGVL 120 Query: 128 DKAAPVIRP 136 P Sbjct: 121 RAIGREGLP 129 >UniRef50_A5F5Z6 N utilization substance protein B homolog n=91 Tax=Gammaproteobacteria RepID=NUSB_VIBC3 Length = 156 Score = 135 bits (342), Expect = 3e-31, Method: Composition-based stats. Identities = 79/149 (53%), Positives = 105/149 (70%), Gaps = 14/149 (9%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDV--------------DVLY 47 KPAARR AR+ A+QA+YSWQ+++ ++A +E QFL + DV Y Sbjct: 6 KPAARRNARQFALQAIYSWQITKENVATIEEQFLTSGKYDEEEHRAAEPALAAPETDVSY 65 Query: 48 FRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEA 107 FR+LLAGV N LD ++P++SR +++L +E A+LR+A+YE+++R DVPYKV INEA Sbjct: 66 FRDLLAGVVLNHNELDSKLRPFVSRPMQDLDMMELALLRLAMYEMTRREDVPYKVVINEA 125 Query: 108 IELAKSFGAEDSHKFVNGVLDKAAPVIRP 136 IELAK F AEDSHKFVNGVLDKAAP +R Sbjct: 126 IELAKVFAAEDSHKFVNGVLDKAAPHVRK 154 >UniRef50_C4L3F7 N utilization substance protein B homolog n=2 Tax=Exiguobacterium RepID=NUSB_EXISA Length = 128 Score = 135 bits (342), Expect = 3e-31, Method: Composition-based stats. Identities = 44/131 (33%), Positives = 70/131 (53%), Gaps = 5/131 (3%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 R ARE A+Q L+ ++S+ ++ + L ++ ++ +L+ G + +D Sbjct: 1 MKRHEAREKAIQTLFQIEVSKLEVDEAIEFALDGEESDP----FYEQLVTGTLEHIEDID 56 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 L+ L L+ LG VE+ +LR+A +EL +P V INEA+ELAKSFG E++ K Sbjct: 57 ALLVENLKNWRLDRLGNVERTILRMATFELLYVETIPENVTINEAVELAKSFGDEEAGKL 116 Query: 123 VNGVLDKAAPV 133 VNGVL Sbjct: 117 VNGVLGNIIKE 127 >UniRef50_C8WLN1 NusB antitermination factor n=2 Tax=Coriobacteriaceae RepID=C8WLN1_EGGLE Length = 195 Score = 135 bits (342), Expect = 4e-31, Method: Composition-based stats. Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 3/139 (2%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 K R AR A+Q LY+ +++ + + D Y +L+ GV ++ Sbjct: 4 KRHERTSARRAALQVLYTSEITDESP-AAIAEGNSRLDEDGPLPEYALKLVLGVESHRCA 62 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED-S 119 +D + L + V++++LR+A +E+ DVP V INEA+ELAK FG ED S Sbjct: 63 IDNHLAATSENWSLARMPIVDRSILRLATFEMMYIDDVPTSVTINEAVELAKDFGGEDES 122 Query: 120 HKFVNGVLDKAAPVIRPNK 138 H+FVNG+L + A ++ + Sbjct: 123 HRFVNGILGRIAKMLEGEE 141 >UniRef50_UPI00006A2BCA UPI00006A2BCA related cluster n=1 Tax=Xenopus (Silurana) tropicalis RepID=UPI00006A2BCA Length = 151 Score = 135 bits (341), Expect = 4e-31, Method: Composition-based stats. Identities = 52/136 (38%), Positives = 71/136 (52%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 +AR RARE A+QALY + +N+ + ++ D ++ LL G L Sbjct: 11 KSARSRAREFALQALYQHLVGRNEASAIDLFTRDLAGFHKADAAHYDALLHGCVRTEDAL 70 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 D L+ P L R L +E AV+ I YE DVP++V +NE IELAK FG D HK+ Sbjct: 71 DALIVPQLDRPLAAFSPIEHAVMWIGAYEFQHCMDVPWRVTLNECIELAKEFGGTDGHKY 130 Query: 123 VNGVLDKAAPVIRPNK 138 VN VL AP +R + Sbjct: 131 VNAVLGGLAPRLRAAE 146 >UniRef50_C0GE32 NusB antitermination factor n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GE32_9FIRM Length = 138 Score = 135 bits (341), Expect = 4e-31, Method: Composition-based stats. Identities = 48/136 (35%), Positives = 79/136 (58%), Gaps = 1/136 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +RR ARE A + L+ + + +N++ Q + E ++ V + R+L+ G N +D Sbjct: 1 MSRRLAREIAFKTLFQYDIGKNEVEPTISQLIEENGLEGAGVEFSRQLVLGTLKNLEAID 60 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + YL + L L V++ VLR+A +E+ R D+P V INEA+EL+K+F +E++ KF Sbjct: 61 KALAGYLQKWELGRLAAVDRNVLRLAAFEILYREDIPAAVTINEALELSKAFHSEEAAKF 120 Query: 123 VNGVLDKAAPVIRPNK 138 +NGVLDK A + Sbjct: 121 LNGVLDKLARHHEGKE 136 >UniRef50_B8FHH2 Sun protein n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FHH2_DESAA Length = 455 Score = 135 bits (341), Expect = 4e-31, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 2/137 (1%) Query: 1 MKP-AARRRARECAVQALYSWQLSQNDIADVEYQFLA-EQDVKDVDVLYFRELLAGVATN 58 MKP A + ++R A + L + + V + L E + D L+ GV N Sbjct: 1 MKPPAGKDKSRITAARILDRLESGDQVLDVVLDRALDKEPGLTRKDRALVMALVYGVLRN 60 Query: 59 TAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 +D ++ + L+++ +LR+ +++L VP +A++ ++E+AK Sbjct: 61 RGRIDWIISSFSKTKLKKIQPEILNILRMGVFQLLFLDRVPPALAVDSSVEMAKKAAPVF 120 Query: 119 SHKFVNGVLDKAAPVIR 135 KFVNG+L R Sbjct: 121 VSKFVNGLLRNVERKGR 137 >UniRef50_B3QV72 N utilization substance protein B homolog n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=NUSB_CHLT3 Length = 211 Score = 135 bits (341), Expect = 4e-31, Method: Composition-based stats. Identities = 42/136 (30%), Positives = 73/136 (53%), Gaps = 2/136 (1%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKD-VDVLYFRELLAGVATNTAYLD 63 +RR+ RE A+Q LY++++ + + V + E V D + +++ V N +D Sbjct: 4 SRRQIRELAMQVLYAYEVRKEKVDKVAKGIIPEDVVADIKAKDFIFKIINSVIQNIQDID 63 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + + L + ++K ++RIA+ E+ DVP KV+INEAIE+AK + + S KF Sbjct: 64 THIAKHADNWELNRMAIIDKNLMRIAIAEMLYLDDVPPKVSINEAIEIAKRYSTDKSSKF 123 Query: 123 VNGVLDKAAPVIRPNK 138 VNG+LD ++ Sbjct: 124 VNGILDATYNEVKSKG 139 >UniRef50_A0Q099 N utilization substance protein B homolog n=3 Tax=Clostridium RepID=NUSB_CLONN Length = 133 Score = 135 bits (341), Expect = 4e-31, Method: Composition-based stats. Identities = 42/132 (31%), Positives = 78/132 (59%), Gaps = 3/132 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLA--EQDVKDVDVLYFRELLAGVATNTAY 61 RR++RE A++ L+ +++ + +++ F + ++++VD +Y +++ G+ N Sbjct: 1 MNRRKSREVAMKLLFEMSINKEEFSEILKNFKENTDTNMENVDFIYINKIVNGIEQNKED 60 Query: 62 LDGLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D ++ L L L +++ +LRI+ YE+ D+P KVA+NEAIELAK + A++S Sbjct: 61 IDKKIEENLTKWKLNRLSKIDLTILRISTYEIMFMEDIPNKVAVNEAIELAKKYSADNSP 120 Query: 121 KFVNGVLDKAAP 132 FVNGVL Sbjct: 121 AFVNGVLGNMIK 132 >UniRef50_C0GIQ4 Sun protein n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GIQ4_9FIRM Length = 451 Score = 135 bits (341), Expect = 4e-31, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 56/135 (41%), Gaps = 3/135 (2%) Query: 4 AARRR---ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 R+R ARE ++ AL + + + L+ + D E+ GV T Sbjct: 1 MTRKRKIDAREASLLALQRVEADDAYVNLALDEVLSSHSLDPRDKRLAAEITYGVITYKL 60 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD L++ R +++L + +LRI Y+L VP A++ +EL K Sbjct: 61 TLDWLIEKVSGRPIKKLDKPIHQILRIGFYQLFYLDRVPPAAAVHATVELVKKGKKRGLA 120 Query: 121 KFVNGVLDKAAPVIR 135 FVNGV+ A Sbjct: 121 PFVNGVMRGALRKKD 135 >UniRef50_C7LSH4 NusB antitermination factor n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LSH4_DESBD Length = 154 Score = 135 bits (341), Expect = 4e-31, Method: Composition-based stats. Identities = 50/142 (35%), Positives = 72/142 (50%), Gaps = 6/142 (4%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVE----YQFLAEQDVK-DVDVLYFRELLAGVAT 57 RR R A Q +YS Q D F E++ + Y L+ GV Sbjct: 2 THNRRHQRRFAFQVIYSLVFGQKMSKDSLIKSFDNFWTEEEFDMERQDSYAWTLVEGVFD 61 Query: 58 NTAYLDGLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 N +D ++ + L + +VE +LR++L+E+ D+P KVA+NEAIELAK FG Sbjct: 62 NYDSIDEIITQHSQHWKLNRIAKVELTILRLSLFEMLFCPDIPIKVAMNEAIELAKDFGD 121 Query: 117 EDSHKFVNGVLDKAAPVIRPNK 138 ++S FVNGVLD AA + N+ Sbjct: 122 DNSKTFVNGVLDAAAKGAQRNE 143 >UniRef50_C9LLK5 Ribosomal RNA small subunit methyltransferase B n=1 Tax=Dialister invisus DSM 15470 RepID=C9LLK5_9FIRM Length = 454 Score = 135 bits (341), Expect = 4e-31, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 50/125 (40%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR A +ALY L +K + EL+ GV Y ++ Sbjct: 12 ARTLAFEALYEIFEKNAYANLTIQSILRWCPLKKEERHLLTELIYGVCRKYNYCLWMISL 71 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 R + ++ + +L + +Y++ +P A+NE +++AK + KF+NGVL Sbjct: 72 ISDRPMFKIHPAVRILLALGIYQIVFLDRIPESAAVNETVKIAKKVTHIGNVKFINGVLR 131 Query: 129 KAAPV 133 Sbjct: 132 NFLRR 136 >UniRef50_B8CWT0 Sun protein n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWT0_HALOH Length = 440 Score = 135 bits (341), Expect = 5e-31, Method: Composition-based stats. Identities = 33/128 (25%), Positives = 54/128 (42%), Gaps = 2/128 (1%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 +R+ A++ L V + L + D + EL+ GV LD ++ Sbjct: 4 SRKVAIKVLIEID-KGAYSNLVLNKELNKVS-DKRDRAFITELVYGVLRQKKRLDYMLSC 61 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 + R L ++ + LR+ALY++ VP + A+ E +E KSF + KF NGVL Sbjct: 62 FSKRPLRKMDNEVLSALRVALYQIEYTDSVPARAAVYETVEALKSFTGHGAVKFTNGVLR 121 Query: 129 KAAPVIRP 136 Sbjct: 122 SYLRNKDK 129 >UniRef50_Q0AZF7 N utilization substance protein B homolog n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=NUSB_SYNWW Length = 134 Score = 135 bits (340), Expect = 5e-31, Method: Composition-based stats. Identities = 38/129 (29%), Positives = 65/129 (50%), Gaps = 1/129 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +RR+ARE A + ++ Q D + + + + + +L+ G A +D Sbjct: 1 MSRRKARETAFKVVFQVDQVQADAKKAFDYLVLHDKLAEKNQGFSWDLIQGTLEKQAEID 60 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ Y L+ + V++ ++R+A YE+ D VAI+EAIE+AK +G E S F Sbjct: 61 QMIASYSREWALDRMSSVDRNIMRVAAYEILYLEDSQAVVAIDEAIEIAKKYGDEGSGSF 120 Query: 123 VNGVLDKAA 131 VN +LDK Sbjct: 121 VNAILDKIL 129 >UniRef50_A6W2L6 N utilization substance protein B homolog n=4 Tax=Gammaproteobacteria RepID=NUSB_MARMS Length = 174 Score = 135 bits (340), Expect = 5e-31, Method: Composition-based stats. Identities = 66/135 (48%), Positives = 94/135 (69%), Gaps = 2/135 (1%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFL--AEQDVKDVDVLYFRELLAGVATNTAYLD 63 R +R A+QA+Y WQ+++ ++++E QF+ ++D+ D +YFRELL GV + LD Sbjct: 27 RSASRRLALQAVYQWQMNKTAVSEIETQFVIDQDRDMDSCDKVYFRELLQGVTASAKKLD 86 Query: 64 GLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 L + L R L EL +E AV+RI YELS+R DVPY+VAINE++ELAK FGA +SHK+V Sbjct: 87 TLFEELLDRPLSELDPIELAVMRIGSYELSQRLDVPYRVAINESVELAKGFGATESHKYV 146 Query: 124 NGVLDKAAPVIRPNK 138 NG+LDK A +R + Sbjct: 147 NGILDKLAQRVRREE 161 >UniRef50_A8ZTU6 N utilization substance protein B homolog n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=NUSB_DESOH Length = 154 Score = 135 bits (340), Expect = 6e-31, Method: Composition-based stats. Identities = 47/139 (33%), Positives = 77/139 (55%), Gaps = 4/139 (2%) Query: 4 AARRRARECAVQALYSWQLSQN---DIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 A+RRR+RE A+Q L+S+ L+ D F A ++ + + +F L GV Sbjct: 2 ASRRRSRELALQFLFSYDLNAAGAGDFDAWMEDFCARFNLSEKNFPHFFTLAQGVKNRWE 61 Query: 61 YLDGLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 L+ L+ L + V++ V+RIA++E+ DVP +VAINEAIE+ K +G ++S Sbjct: 62 KLNDLLAESSEHWKLSRMSGVDRNVMRIAIFEMLYCDDVPPRVAINEAIEIGKKYGTDES 121 Query: 120 HKFVNGVLDKAAPVIRPNK 138 F+NGVLD+ + ++ Sbjct: 122 GAFINGVLDRINKELGGSE 140 >UniRef50_Q1H424 N utilization substance protein B homolog n=2 Tax=Betaproteobacteria RepID=NUSB_METFK Length = 154 Score = 134 bits (339), Expect = 6e-31, Method: Composition-based stats. Identities = 56/134 (41%), Positives = 81/134 (60%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 +RR++RE ++ +Y ++Q D + + + + D D YFR+LL GVA + LD Sbjct: 15 SRRKSRELVLKGIYLGLMNQKDTSVIIRELADDPDFDRADYEYFRQLLEGVAESIDELDA 74 Query: 65 LMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + L R + EL +E A+L IA YEL +PY+VAINE +ELAK +G D HK+VN Sbjct: 75 RLAGLLDRQVSELSPIEHAILCIAAYELIHDVTIPYRVAINEGVELAKLYGGTDGHKYVN 134 Query: 125 GVLDKAAPVIRPNK 138 GVLDK A RP++ Sbjct: 135 GVLDKIAAEARPDE 148 >UniRef50_A6Q4Q9 N utilization substance protein B homolog n=20 Tax=Epsilonproteobacteria RepID=NUSB_NITSB Length = 139 Score = 134 bits (339), Expect = 7e-31, Method: Composition-based stats. Identities = 44/137 (32%), Positives = 75/137 (54%), Gaps = 2/137 (1%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 A R +ARE + LY++ L +I L E+ +++ + L G + +D Sbjct: 2 ATRHQAREAVIGLLYAYDLGNPEIKKFAEDILEEKKIRNKQREFALALFKGTVEHLDTID 61 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++K +L +E +G +E+A+LR+ +YEL +D+ + INEA+ELAK G + S KF Sbjct: 62 EMIKKHLESWDMERVGHIERAILRLGVYELFY-TDLDPAIVINEAVELAKKLGTDQSPKF 120 Query: 123 VNGVLDKAAPVIRPNKK 139 +NGVLD A ++ + Sbjct: 121 INGVLDAIAKEVKNGSQ 137 >UniRef50_C0EY63 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0EY63_9FIRM Length = 466 Score = 134 bits (339), Expect = 8e-31, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 55/137 (40%), Gaps = 2/137 (1%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDV-DVLYFRELLAGVATNT 59 M+ R R A+ L + ++ + L + D ++ L GV Sbjct: 14 MQMEKRTDMRAEALDTLIDIERNKKLSHIAIGETLMRNQFEKKADRAFYTRLCEGVTERK 73 Query: 60 AYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 YLD ++ Y +++ + +++LR+ Y++ DV A +EA+ LAK G Sbjct: 74 IYLDYILDHYSKTPMKKCKPLIRSLLRMGAYQILFM-DVRDAAACSEAVSLAKKRGFGRL 132 Query: 120 HKFVNGVLDKAAPVIRP 136 FVNGVL Sbjct: 133 SGFVNGVLRTLVREKEN 149 >UniRef50_D1VSJ6 Transcription antitermination factor NusB n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSJ6_9FIRM Length = 139 Score = 134 bits (339), Expect = 8e-31, Method: Composition-based stats. Identities = 40/135 (29%), Positives = 75/135 (55%), Gaps = 1/135 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 R+ AR A+Q LYS +L+++ + +F D + + Y +++ + N +D Sbjct: 1 MGRKNARVGAMQLLYSMELNKDFSQENIEKFFENYDFSESEQSYINSVISELVNNLDSVD 60 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ L + L V++ +LR+A++E R D+P +V+INEA+E+AK + +E+S KF Sbjct: 61 KVLSDNLQGWTIPRLATVDREILRVAIFEFLYRKDIPVEVSINEAVEIAKKYSSEESPKF 120 Query: 123 VNGVLDKAAPVIRPN 137 VNG+L ++ Sbjct: 121 VNGILASILKNLKDE 135 >UniRef50_Q3BXH9 N utilization substance protein B homolog n=20 Tax=Xanthomonadaceae RepID=NUSB_XANC5 Length = 162 Score = 133 bits (337), Expect = 1e-30, Method: Composition-based stats. Identities = 63/124 (50%), Positives = 81/124 (65%) Query: 15 QALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLL 74 QA+Y+WQ+S V QF EQ + D+ YF L+ GV +N A LD + PYL R + Sbjct: 30 QAVYAWQISGGFAKQVIAQFAHEQAHEVADLAYFENLVEGVLSNRAELDTALTPYLDRSV 89 Query: 75 EELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVI 134 EE+ +E+AVLR+A YEL R DVPY+V INEAIE AK FG+E H +VNGVLD+AA Sbjct: 90 EEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRFGSEHGHTYVNGVLDRAAVEW 149 Query: 135 RPNK 138 R + Sbjct: 150 RKVE 153 >UniRef50_B7KB91 Sun protein n=19 Tax=Cyanobacteria RepID=B7KB91_CYAP7 Length = 452 Score = 133 bits (337), Expect = 1e-30, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 52/129 (40%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R+ A+ L + Q + D+ ++D EL+ G+ LD ++ Sbjct: 9 RQLALIILRDIYQKEAYTDLALDQGIKRADLGNLDRGLVTELVYGIVRRQRTLDEIISQL 68 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 ++ + + +L I LY+L +P A+N ++ELAK VNG+L + Sbjct: 69 GTKKANQQPPDLRLILHIGLYQLRYLDQIPPSAAVNTSVELAKKNKLGKLSGVVNGILRQ 128 Query: 130 AAPVIRPNK 138 + K Sbjct: 129 YDRIKEQGK 137 >UniRef50_Q30YL1 N utilization substance protein B homolog n=5 Tax=Desulfovibrionales RepID=NUSB_DESDG Length = 154 Score = 133 bits (337), Expect = 1e-30, Method: Composition-based stats. Identities = 54/141 (38%), Positives = 80/141 (56%), Gaps = 7/141 (4%) Query: 4 AARRRARECAVQALYSWQLSQN-DIADVEYQFLAEQDVKDVD-----VLYFRELLAGVAT 57 ++RR +R A Q LY S D+A ++ + A DV D V + EL+ G T Sbjct: 8 SSRRSSRALAFQVLYGLNFSPAKDLAQLQEAYCASPDVSDRGGEAHPVGFAWELIEGTWT 67 Query: 58 NTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 N LD ++ + +E +G++E +LR+A+YE+ R+DVP KVAINE IEL+K FG Sbjct: 68 NQKALDEIITRFAQNWRVERIGKIELTILRLAVYEMLYRADVPPKVAINEGIELSKQFGD 127 Query: 117 EDSHKFVNGVLDKAAPVIRPN 137 + S F+NG+LD AA + Sbjct: 128 DKSRNFINGILDAAAKALEAG 148 >UniRef50_Q1D350 N utilization substance protein B homolog n=2 Tax=Cystobacterineae RepID=NUSB_MYXXD Length = 140 Score = 133 bits (337), Expect = 1e-30, Method: Composition-based stats. Identities = 48/133 (36%), Positives = 79/133 (59%), Gaps = 5/133 (3%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDV----KDVDVLYFRELLAGVATNT 59 ARR RE A+QALY +++ A+ + + V + REL+ GV ++ Sbjct: 2 GARRTGRERALQALYQLEMATATTAEALESAWSAAEESNKRDPDAVKFARELVEGVQSHR 61 Query: 60 AYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 +D L++ + L+ + ++++ VLR+ ++EL R D+P KV+INEA+EL K+FG E+ Sbjct: 62 DEIDQLIERHSHNWRLDRMSRIDRNVLRLGIFELKYRPDIPRKVSINEAVELGKNFGNEE 121 Query: 119 SHKFVNGVLDKAA 131 S FVNG+LD+ A Sbjct: 122 SSAFVNGLLDRVA 134 >UniRef50_C0W1K3 16S rRNA m(5)C 967 methyltransferase n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0W1K3_9ACTO Length = 487 Score = 133 bits (336), Expect = 1e-30, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 1/131 (0%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 K A +AR A + L + V + + E ++ D + EL+ G N A Sbjct: 23 KQARVSKARTVAFETLLKVDVEDAYANIVLPKAITEANLDSRDASFATELVYGTLRNLAR 82 Query: 62 LDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 +D +++ + + + +L +A+LR+ +++ VP A+ E++EL K K Sbjct: 83 VDWVIEQCMPKKIADLDPEVRAILRLTAHQILHL-RVPDHAAVAESVELTKHVAGFGVEK 141 Query: 122 FVNGVLDKAAP 132 FVNGV Sbjct: 142 FVNGVARAMVE 152 >UniRef50_Q3A4L2 N utilization substance protein B homolog n=2 Tax=Desulfuromonadales RepID=NUSB_PELCD Length = 156 Score = 133 bits (335), Expect = 2e-30, Method: Composition-based stats. Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 18/153 (11%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDV----------------KDVD 44 M RR RE A++ +YS+ + + + F + + Sbjct: 1 MASGMRRTGRELAIKIIYSFDGTG-SVEALLATFWSNFRFRDDVLGEPLEDSSQAVAEPV 59 Query: 45 VLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVA 103 + +L+ GVA N +DGL+ + + LE + +V+ A+LR+A YEL DVP V Sbjct: 60 REFAEDLVRGVAENLEKIDGLIGEFSTNWSLERMARVDLAILRMATYELLGHLDVPVSVI 119 Query: 104 INEAIELAKSFGAEDSHKFVNGVLDKAAPVIRP 136 INEA+E+ K +G +++ FVNG+LD+ + RP Sbjct: 120 INEAVEIGKRYGTKETPSFVNGILDRISRTCRP 152 >UniRef50_B5ELV9 NusB antitermination factor n=3 Tax=Acidithiobacillus RepID=B5ELV9_ACIF5 Length = 147 Score = 133 bits (335), Expect = 2e-30, Method: Composition-based stats. Identities = 60/141 (42%), Positives = 85/141 (60%), Gaps = 3/141 (2%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNT 59 MK + RR AR+ AVQALY WQ++ A++E QF ++ + ++ DV +F+ L GV Sbjct: 1 MKISRRRLARQAAVQALYQWQMNPGHCAEIELQFTSDPERLQGADVAFFKSLWQGVCAAI 60 Query: 60 AYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 + LD + + R +E+ +VE+A+LR+A EL PY+V INEAIEL K FG E Sbjct: 61 SELDPAIAEEVQDRRWADEVSEVERAILRLAACELRDYPQTPYRVIINEAIELDKDFGGE 120 Query: 118 DSHKFVNGVLDKAAPVIRPNK 138 H+FVN VLDK A R + Sbjct: 121 QGHRFVNAVLDKLAQRWRSAE 141 >UniRef50_UPI00016C01E8 sun protein n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C01E8 Length = 229 Score = 133 bits (335), Expect = 2e-30, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 57/132 (43%), Gaps = 7/132 (5%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK RE V AL + + V + L ++ D E+ G Sbjct: 1 MKHL-----REIVVDALVKVEKEGAYLQLVLKKDLEI--LESRDRGLATEIATGTLKYQI 53 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D ++ S + ++ + ++RI++Y+L VP AINEA++LAKS G Sbjct: 54 AIDYIINQVSSIKVSKMKPFIRNLMRISVYQLRYLDKVPAHAAINEAVKLAKSRGFAGLS 113 Query: 121 KFVNGVLDKAAP 132 KFVNGVL Sbjct: 114 KFVNGVLRSIER 125 >UniRef50_C5CI90 NusB antitermination factor n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CI90_KOSOT Length = 148 Score = 133 bits (335), Expect = 2e-30, Method: Composition-based stats. Identities = 41/140 (29%), Positives = 72/140 (51%), Gaps = 3/140 (2%) Query: 3 PAARRRARECAVQALYSWQLSQNDIA--DVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 RR+ RE ++++ + ++ A + + A + + L G+ + Sbjct: 6 TGQRRKIREIVFRSIFQYDFHKDFPAAMEYLERETAFYSLDKESKNRAKGYLMGIIEHLD 65 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D ++ YL + L ++++VLR+A YEL DVP +V +NEAIE+ K +G+++ Sbjct: 66 EIDSIITAYLKNWTFDRLASIDRSVLRLATYELLYVDDVPIEVTLNEAIEITKKYGSQEE 125 Query: 120 HKFVNGVLDKAAPVIRPNKK 139 KFVNGVLDK A +K Sbjct: 126 GKFVNGVLDKIAKERVSEEK 145 >UniRef50_B0K9D9 N utilization substance protein B homolog n=10 Tax=Thermoanaerobacterales RepID=NUSB_THEP3 Length = 140 Score = 132 bits (334), Expect = 3e-30, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 67/136 (49%), Gaps = 3/136 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 R ARE V+ LY + +S+ I+ + F E+D Y + G + +D Sbjct: 1 MNRTEAREWVVKMLYQYDVSRLPISKILENFYKEKD-PGEQKEYIENTVIGAIEHLEEID 59 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ Y L + +++ A+LR ++YE+ ++P ++INEA+E+AK + EDS F Sbjct: 60 KEIERYSQNWALNRMPKIDLAILRCSIYEMQY-GNIPVNISINEAVEIAKKYSTEDSPAF 118 Query: 123 VNGVLDKAAPVIRPNK 138 +NG+L + Sbjct: 119 INGLLGAFVRDEGLEE 134 >UniRef50_UPI00016C38F9 Fmu, rRNA SAM-dependent methyltransferase:Nop2p n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C38F9 Length = 465 Score = 132 bits (334), Expect = 3e-30, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 59/124 (47%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR+ A L + A++ + ++ D + +L+ GV LD L+KP Sbjct: 5 ARQVAADVLNRSRSRDGFAAELVDDAVNAANLSPQDRRFVTQLVFGVIRRGGTLDALLKP 64 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 ++ + +LR+ ++L+ + VP A++E +ELA+ GA + FVNGVL Sbjct: 65 FIHLPTHAVQDRVWDLLRLGAFQLTFLTHVPKHAAVHETVELAEHVGAPKAKGFVNGVLR 124 Query: 129 KAAP 132 + A Sbjct: 125 RIAE 128 >UniRef50_D1CCN3 NusB antitermination factor n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CCN3_THET1 Length = 153 Score = 132 bits (334), Expect = 3e-30, Method: Composition-based stats. Identities = 47/132 (35%), Positives = 77/132 (58%), Gaps = 1/132 (0%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R +AR A+Q LY + ++ ++ + E+++ + Y +L GV N D L Sbjct: 12 RHQARALAMQVLYEAETTRKQPYEILQRRRNEENIPEQVHAYASDLAIGVWQNRKEYDSL 71 Query: 66 MKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + + ++++ +V++ +LRIA++E+ +R+DVP AINEA+ELAK +GAE S KFVN Sbjct: 72 ITRFTPTWTIDQMAKVDRNILRIAVHEMLRRNDVPIAAAINEAVELAKEYGAEASPKFVN 131 Query: 125 GVLDKAAPVIRP 136 GVL A I Sbjct: 132 GVLGAIADAIES 143 >UniRef50_C6R1D5 Ribosomal RNA small subunit methyltransferase B n=1 Tax=Rothia mucilaginosa ATCC 25296 RepID=C6R1D5_9MICC Length = 659 Score = 132 bits (333), Expect = 3e-30, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 56/139 (40%), Gaps = 5/139 (3%) Query: 3 PAARRR----ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATN 58 P+AR R AR L S S V + + + D + EL G + Sbjct: 155 PSARSRTADTARATVFDVLRSVAESDAYANLVLPKAIRSHRLDHRDAGFATELTYGTLRH 214 Query: 59 TAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 D ++ + R +E++G VLR+ +++L VP A+N+++ LA+ Sbjct: 215 QGTYDAILSRCVDRPIEKVGTTTLIVLRMGVHQLLNM-RVPAHAALNQSVSLAREKIGAG 273 Query: 119 SHKFVNGVLDKAAPVIRPN 137 F+N VL + + Sbjct: 274 PASFINAVLRRVSERTPEE 292 >UniRef50_B5JUN2 Transcription antitermination factor NusB n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JUN2_9GAMM Length = 188 Score = 132 bits (332), Expect = 4e-30, Method: Composition-based stats. Identities = 58/145 (40%), Positives = 87/145 (60%), Gaps = 7/145 (4%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAE-------QDVKDVDVLYFRELLAG 54 + ARR+ R+ +QALY + + + QF + D+ VD +F+ L+ Sbjct: 44 RTEARRKTRQRILQALYQCYFNPLPSSKLVQQFYDDEVGEEEGNDMFGVDADFFQAALST 103 Query: 55 VATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 T LD L +L ++ L VE +LR+A++ELS+R DVP +V INEA+ELAKS+ Sbjct: 104 CVDKTEQLDELYCAHLKMPIDRLDPVELCILRLAVFELSERLDVPRRVVINEAVELAKSY 163 Query: 115 GAEDSHKFVNGVLDKAAPVIRPNKK 139 GAED HKF+NGV+DK A +RP+++ Sbjct: 164 GAEDGHKFINGVIDKTARDLRPHEQ 188 >UniRef50_A9KM96 Sun protein n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KM96_CLOPH Length = 453 Score = 132 bits (332), Expect = 4e-30, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 1/130 (0%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQ-DVKDVDVLYFRELLAGVATNTAYLDGLM 66 ARE + + V + L D+ D + L GV LD + Sbjct: 2 NAREIVLTMCLKINEDKLPSHVVINETLKNYKDLSKQDRAFISRLCLGVLEQKLRLDYDL 61 Query: 67 KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGV 126 + + ++++ V + VLRIA Y++ +P A +EA++L K G FVNG+ Sbjct: 62 ERFSKIKVKKMKPVIRNVLRIAAYQIEFMEQIPDSAACDEAVKLVKKRGLGGLSGFVNGI 121 Query: 127 LDKAAPVIRP 136 L + + Sbjct: 122 LRNLSREFQK 131 >UniRef50_B2IXU2 Sun protein n=1 Tax=Nostoc punctiforme PCC 73102 RepID=B2IXU2_NOSP7 Length = 487 Score = 132 bits (332), Expect = 5e-30, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 1/124 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R+ A AL + L + ++ D D EL+ G LD L+ + Sbjct: 5 RQLAFIALRDVH-KGAYADVALDRVLQKVNLPDRDRRLVTELVYGSVRRQRTLDTLIDQF 63 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 + Q + +L + Y+L + +P A+N ++LAK G FVNG+L + Sbjct: 64 AKNKSHQQPQDLRTILHLGFYQLRYQERIPASAAVNTTVQLAKENGFSGLTGFVNGLLRQ 123 Query: 130 AAPV 133 Sbjct: 124 YLRK 127 >UniRef50_Q136T4 N utilization substance protein B homolog n=36 Tax=Alphaproteobacteria RepID=NUSB_RHOPS Length = 174 Score = 132 bits (332), Expect = 5e-30, Method: Composition-based stats. Identities = 44/148 (29%), Positives = 73/148 (49%), Gaps = 11/148 (7%) Query: 2 KPAARR-RARECAVQALYSWQLSQNDIADVEYQF--------LAEQDVKDVDVLYFRELL 52 + A RR AR AVQALY + I D +F + + +FR+++ Sbjct: 24 RKANRRGAARLAAVQALYQMDIGGAGIDDTFAEFESHWIGNEVEGDQYLPAEAAFFRDIV 83 Query: 53 AGVATNTAYLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIEL 110 +GV + LD L+ L+ L + + +AV+R YEL R D+P +V ++E +++ Sbjct: 84 SGVVRDQTKLDPLIDEALAKGWPLARIDAIIRAVMRAGAYELEHRKDIPARVVVSEYVDV 143 Query: 111 AKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 A +F +D VN VLD+ A R ++ Sbjct: 144 AHAFVEKDETGMVNAVLDQIARQFRADE 171 >UniRef50_C4V0R0 rRNA SAM-dependent methyltransferase RmsB n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V0R0_9FIRM Length = 449 Score = 132 bits (332), Expect = 5e-30, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 1/128 (0%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 R RE A+Q L + L + + D + EL+ G LD +++ Sbjct: 12 RIREQAMQVLLRIHSEGAYANVALAEELRIAQMTERDRRFLTELVYGTVKAGETLDYMIR 71 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 Y++ L++ + +LR+ Y++ +P + A+ELAK G + + FVNGVL Sbjct: 72 RYVA-DLKKAQPPIRELLRLGFYQIFFMDKIPSSAVCHTAVELAKKHGGKGAASFVNGVL 130 Query: 128 DKAAPVIR 135 A + Sbjct: 131 RTALREPK 138 >UniRef50_Q3A7Z0 Sun protein n=2 Tax=Desulfuromonadales RepID=Q3A7Z0_PELCD Length = 451 Score = 132 bits (332), Expect = 5e-30, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 48/125 (38%), Gaps = 2/125 (1%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFL-AEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 R A L + L A D+ D EL+ GV LD ++ Sbjct: 7 RHIAFDILDKVH-NGAFADLALDSALQALPDMDVRDRALATELVYGVLRYRGRLDFALQQ 65 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 + L ++ +LR+ Y++ + +P A+ E +ELA+ + + F+NG+L Sbjct: 66 LCRKPLAKVEPAVLNLLRLGCYQILQLDRIPNHAAVFETVELARRLKLQRATGFINGILR 125 Query: 129 KAAPV 133 Sbjct: 126 GLVRQ 130 >UniRef50_Q5F9Y0 N utilization substance protein B homolog n=22 Tax=Neisseria RepID=NUSB_NEIG1 Length = 141 Score = 132 bits (332), Expect = 5e-30, Method: Composition-based stats. Identities = 59/138 (42%), Positives = 80/138 (57%), Gaps = 1/138 (0%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK ARRR+RE AVQA+Y +++ ++ D D F +L G TN A Sbjct: 1 MKT-ARRRSRELAVQAVYQSLINRTAAPEIAKNIREMSDFAKADEELFNKLFFGTQTNAA 59 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 ++P L R ++L +E+AVL A +ELS + PY V INEAIE+ K+FG D H Sbjct: 60 DYIQKIRPLLDRDEKDLNPIERAVLLTACHELSAMPETPYPVIINEAIEVTKTFGGTDGH 119 Query: 121 KFVNGVLDKAAPVIRPNK 138 KFVNG+LDK A IRP++ Sbjct: 120 KFVNGILDKLAAQIRPDE 137 >UniRef50_A8ZUK3 Sun protein n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZUK3_DESOH Length = 468 Score = 132 bits (332), Expect = 5e-30, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 3/134 (2%) Query: 2 KPAARRRA--RECAVQALYSWQLSQNDIADVEYQFLAEQDVKD-VDVLYFRELLAGVATN 58 +P A R++ R A++ L + + + V + LA + D L+ GV Sbjct: 12 RPTAARKSDPRAVALRILTALEKGHRTLDQVADEALARVSFPEKRDRALVTTLVYGVLRW 71 Query: 59 TAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 LD + + L+ + +LR+ L++L +P AIN +++L+K G Sbjct: 72 RNTLDYTIVHFSRTPLQRMDPAVLNILRLGLFQLRFLDRIPDFAAINSSVDLSKQAGLGR 131 Query: 119 SHKFVNGVLDKAAP 132 FVNG+L + Sbjct: 132 LSGFVNGLLRSSTR 145 >UniRef50_A8LE23 Fmu (Sun) domain protein n=3 Tax=Frankia RepID=A8LE23_FRASN Length = 495 Score = 132 bits (332), Expect = 5e-30, Method: Composition-based stats. Identities = 33/142 (23%), Positives = 57/142 (40%), Gaps = 7/142 (4%) Query: 1 MKPAARRR------ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAG 54 M +A RR AR A + L + + L+ + + D + EL G Sbjct: 1 MSVSAPRRGGTTDPARLLAWEVLRAVDERGAYANLLLPALLSGRRLSPRDRGFATELTYG 60 Query: 55 VATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 LDG++ SR + + + LR+ Y+L + VP + A+ ++L ++ Sbjct: 61 SLRAQGTLDGVLDTVTSRPVASVDPPVRDALRLGAYQLL-STRVPPRAAVASTVDLVRAT 119 Query: 115 GAEDSHKFVNGVLDKAAPVIRP 136 E +F N VL + A I Sbjct: 120 CGERPVRFANAVLRRVAARIEA 141 >UniRef50_D2L8L5 NusB antitermination factor n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L8L5_9DELT Length = 167 Score = 131 bits (331), Expect = 6e-30, Method: Composition-based stats. Identities = 49/142 (34%), Positives = 73/142 (51%), Gaps = 7/142 (4%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAE------QDVKDVDVLYFRELLAGVAT 57 A+RR+AR+ A + LY + A + + EL+ GV Sbjct: 19 ASRRKARKQAFECLYGLIFESAADERSLRRVFARCPHDVMEGEDGAGQAFAWELVQGVWQ 78 Query: 58 NTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 N LD L+ + L + +VE +LR+ALYE+ RSD+P +VA+NEAIELAK +G Sbjct: 79 NQRELDALIVKFSKNWKLSRIAKVELTILRLALYEILHRSDIPLRVALNEAIELAKRYGD 138 Query: 117 EDSHKFVNGVLDKAAPVIRPNK 138 E+S F+NG+LD A + + Sbjct: 139 ENSRNFINGILDAVAKAVDSGE 160 >UniRef50_A6CAX2 Transcription antitermination protein NusB n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CAX2_9PLAN Length = 171 Score = 131 bits (331), Expect = 6e-30, Method: Composition-based stats. Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 2/131 (1%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R++AR VQ LY L+ + + + + E + EL GV LD Sbjct: 4 RKQARFLVVQMLYQIDLNPDISINEIREMIEEHGRNKTARTFAWELFTGVMEFKQQLDEH 63 Query: 66 MKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + L+ + ++ +LR+ YEL +D P V I+EA+ELA+ FG+ S +FVN Sbjct: 64 IVRVAENWTLKRMAVTDRNILRLGTYELLH-TDTPPAVVIDEAVELAREFGSAHSSQFVN 122 Query: 125 GVLDKAAPVIR 135 G+LDK Sbjct: 123 GILDKVVQRKD 133 >UniRef50_Q0AXL7 Putative uncharacterized protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AXL7_SYNWW Length = 456 Score = 131 bits (331), Expect = 6e-30, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 53/131 (40%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 +AR A + +Y + L D+ D E++ G +LD +++ Sbjct: 11 KARIMAAEIVYEVMERGAFANLALAKALRNSDLSAADRHLLTEIVNGTVRMIKHLDWVLE 70 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 +L +++ ++LR ALY+L + VP +N+A+E+++ N VL Sbjct: 71 LFLHSPIKKQNPYLLSILRTALYQLMFLAKVPDYALVNDAVEISRQKMGAKMAGVSNAVL 130 Query: 128 DKAAPVIRPNK 138 + K Sbjct: 131 RNIIRKLDKIK 141 >UniRef50_Q2JK83 Ribosomal RNA small subunit methyltransferase B n=1 Tax=Synechococcus sp. JA-2-3B'a(2-13) RepID=Q2JK83_SYNJB Length = 457 Score = 131 bits (331), Expect = 7e-30, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 1/133 (0%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 AR+ A+ AL + V LA + D EL+ G+ LD L+ Sbjct: 2 NARQLALLALQKIERQNAYADLVLGHLLANSSLIPADRHLVSELVYGITRRRRTLDALID 61 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 R + + +L + LY+L+ +P AI+ ++ELA+ G VNG+L Sbjct: 62 CLAQRPAHKQPPDLRLILHLGLYQLAFLDQIPASAAIHTSVELARQMGLGSLTGVVNGIL 121 Query: 128 DKAAPV-IRPNKK 139 + +K Sbjct: 122 RAYQRQVLDQPEK 134 >UniRef50_B2S4Q2 N utilization substance protein B homolog n=3 Tax=Treponema RepID=NUSB_TREPS Length = 141 Score = 131 bits (330), Expect = 7e-30, Method: Composition-based stats. Identities = 44/130 (33%), Positives = 66/130 (50%), Gaps = 3/130 (2%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFL--AEQDVKDVDVLYFRELLAGVATNTAYLD 63 RRRAR A QAL++W + + D+ + R L G + +D Sbjct: 10 RRRARILAFQALFAWDAAGITPETLTQFTWLRRNPPPSTQDLGFSRLLFLGTLEHLREID 69 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 G + L L +V+KA+LR++ Y L + D+P V I+EA+ +A+ FG +DS +F Sbjct: 70 GCVSSRLEHWDFVRLNKVDKAILRLSAYSLLFQKDIPPVVVIHEAVSIARDFGTDDSFRF 129 Query: 123 VNGVLDKAAP 132 VNGVLD A Sbjct: 130 VNGVLDNIAK 139 >UniRef50_Q5WF59 N utilization substance protein B homolog n=2 Tax=Bacillus RepID=NUSB_BACSK Length = 133 Score = 131 bits (330), Expect = 8e-30, Method: Composition-based stats. Identities = 43/127 (33%), Positives = 67/127 (52%), Gaps = 4/127 (3%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 RR AR AVQ LY L ++ L +++ ++ L+ G + +D Sbjct: 1 MNRRVARLRAVQTLYQLTLIDINVDKAIENTLNDEEEPS---EFYNTLVHGTLEHQDEID 57 Query: 64 GLMKPYLSR-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 G + L L+ LG V++A+ R+ L+E+ D+P V +NEAIELAK+FG D+ +F Sbjct: 58 GYLSENLKGYTLDRLGHVDRAIARMGLFEMLYLDDIPVNVTLNEAIELAKAFGGTDAGRF 117 Query: 123 VNGVLDK 129 +NGVL Sbjct: 118 INGVLSN 124 >UniRef50_UPI0001C42A93 transcription antitermination protein NusB n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42A93 Length = 135 Score = 131 bits (330), Expect = 8e-30, Method: Composition-based stats. Identities = 45/137 (32%), Positives = 75/137 (54%), Gaps = 4/137 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 RR AR A QALY L+ +++ L + + +F +L+ G +D Sbjct: 1 MNRRLARLRAAQALYQMDLTGSEMESAIESVLEDN---EKQSEFFTQLVQGTTELKTKID 57 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + L + +G V++A++R+A+YE+ + D+P V NEAIELAK+FG E++ +F Sbjct: 58 ETISANLEGWTISRMGHVDRAIIRMAMYEMLEVEDIPVNVTFNEAIELAKAFGGEEAGRF 117 Query: 123 VNGVLDKAAPVIRPNKK 139 VNGVL K+ + ++K Sbjct: 118 VNGVLSKSIETLNLDRK 134 >UniRef50_D2NSI1 tRNA and rRNA cytosine-C5-methylase n=2 Tax=Micrococcaceae RepID=D2NSI1_9MICC Length = 697 Score = 131 bits (330), Expect = 8e-30, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 5/139 (3%) Query: 3 PAARRR----ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATN 58 P+AR R AR + L S S V + + + D + EL G + Sbjct: 193 PSARSRTADTARATVFEVLRSVAESDAYANLVLPKAIRSHRLDHRDAGFATELTYGTLRH 252 Query: 59 TAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 D +++ + R LE++G VLR+ +++L VP A+N+++ LA+ Sbjct: 253 QGTYDAILRHCVDRPLEKVGTTTLIVLRMGVHQLLNM-RVPAHAALNQSVSLAREKIGAG 311 Query: 119 SHKFVNGVLDKAAPVIRPN 137 F+N VL + + Sbjct: 312 PASFINAVLRRVSERTPEE 330 >UniRef50_C9L6W4 Ribosomal RNA small subunit methyltransferase B n=12 Tax=Clostridiales RepID=C9L6W4_RUMHA Length = 454 Score = 131 bits (330), Expect = 8e-30, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 1/130 (0%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNTAYLD 63 + RE + L V L + ++ + + + G LD Sbjct: 3 NKVNLRELVLGILLEINKEGQHSHLVIRSTLEKYQYLEKQERAFLTRVCEGTLEYKLRLD 62 Query: 64 GLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 ++ Y S +E++ V + +LR ++Y+L +VP +EA++LA+ G + FV Sbjct: 63 YILDQYSSVPVEKMKPVIREILRSSVYQLLYMDNVPDSAVCDEAVKLARKKGFYNLTGFV 122 Query: 124 NGVLDKAAPV 133 NGVL K A Sbjct: 123 NGVLRKVARE 132 >UniRef50_B0KA07 Sun protein n=11 Tax=Thermoanaerobacterales RepID=B0KA07_THEP3 Length = 444 Score = 131 bits (330), Expect = 9e-30, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 55/135 (40%), Gaps = 9/135 (6%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MKP RE A + L + + L Q++K++D + +EL+ GV Sbjct: 1 MKP------REIAYKILQEVLSKEAYANISFNKHLKGQELKEIDRGFTKELVFGVIERKY 54 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD ++ ++ + + + L + LY+L VP AINE + +AK Sbjct: 55 TLDFILSFFVKKAPDLKTMI---FLEMGLYQLLYMDKVPSYAAINETVNIAKKVLGIKRA 111 Query: 121 KFVNGVLDKAAPVIR 135 F+N VL Sbjct: 112 NFINAVLRNYDREKE 126 >UniRef50_B1H071 Transcription antitermination factor NusB n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1H071_UNCTG Length = 142 Score = 131 bits (330), Expect = 9e-30, Method: Composition-based stats. Identities = 41/130 (31%), Positives = 70/130 (53%), Gaps = 1/130 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 RR+AREC++ LY+ I + F + ++ +L GV N LD Sbjct: 2 GTRRKARECSLHMLYAVDNCNVPIESIYNSFAVYFPKGEAYRMFALDLFKGVCDNKEDLD 61 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 L+K +E + V++ ++R+A YE+ +++P +V I+EA+E++K + +DS KF Sbjct: 62 SLIKQCAKNWEIERMAAVDRNIIRLATYEIMATTNIPIRVIIDEAVEISKKYSTKDSSKF 121 Query: 123 VNGVLDKAAP 132 VNG+LDK Sbjct: 122 VNGILDKLKK 131 >UniRef50_C6CU26 NusB antitermination factor n=3 Tax=Bacillales RepID=C6CU26_PAESJ Length = 153 Score = 130 bits (329), Expect = 1e-29, Method: Composition-based stats. Identities = 55/145 (37%), Positives = 81/145 (55%), Gaps = 11/145 (7%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVL----------YFRELLA 53 RR ARE AV +LY ++++ + + E ++ Y REL+ Sbjct: 1 MKRRLAREIAVSSLYQLEMNEVTPMEAVDMLMEEARSENEIEAEFVENDQTDNYVRELVN 60 Query: 54 GVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAK 112 GVA N A +D ++ YL+ ++ L +V++ +LR+A +E++ R+DVP K AINEAIELAK Sbjct: 61 GVAENKAAIDERLQHYLTGWQVDRLSRVDRQILRLAYFEIAYRNDVPPKAAINEAIELAK 120 Query: 113 SFGAEDSHKFVNGVLDKAAPVIRPN 137 FG E+S KFVNGVL K Sbjct: 121 HFGTEESGKFVNGVLGKLLKEREGE 145 >UniRef50_A9ET18 N utilization substance protein B homolog n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=NUSB_SORC5 Length = 140 Score = 130 bits (329), Expect = 1e-29, Method: Composition-based stats. Identities = 46/132 (34%), Positives = 73/132 (55%), Gaps = 1/132 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 AR RE A+Q L++ + + V F E Y E++ GVA + A +D Sbjct: 2 GARSTGREAALQMLFAVEAGGSSAPRVVATFWRETPGDPEGRAYADEVVVGVAEDLAAVD 61 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ + LE + +V++ VLR+ +EL R +VP V ++EA+ELAK +G+E+S F Sbjct: 62 EAIRKASTNWRLERMARVDRNVLRLGAWELMNRPEVPRAVILDEAVELAKRYGSEESGAF 121 Query: 123 VNGVLDKAAPVI 134 VNGVLD+ A + Sbjct: 122 VNGVLDRIAENL 133 >UniRef50_B0MPP7 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MPP7_9FIRM Length = 439 Score = 130 bits (328), Expect = 1e-29, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 49/135 (36%), Gaps = 5/135 (3%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK AR+ + L + + D D + L GV Sbjct: 1 MKT-----ARQITLDLLIRMDTQGAYSNIILDHAFTQNDADRRDKAFSAALFYGVLERRM 55 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD L++ Y +++ +LR+ Y+L + VP A+NE++ L + + Sbjct: 56 TLDYLIRYYSGIEFDKIKTAVVEILRMGFYQLLFMNSVPDSAAVNESVALCDYCNSTKAK 115 Query: 121 KFVNGVLDKAAPVIR 135 +VN +L + Sbjct: 116 GYVNAILRTFLRNEK 130 >UniRef50_B1LAQ8 N utilization substance protein B homolog n=10 Tax=Thermotogaceae RepID=NUSB_THESQ Length = 142 Score = 130 bits (328), Expect = 1e-29, Method: Composition-based stats. Identities = 51/141 (36%), Positives = 74/141 (52%), Gaps = 4/141 (2%) Query: 1 MKPAARRRARECAVQALYSWQLS-QNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNT 59 MK RRR R +AL+ + D+ + + L E R + G+ N Sbjct: 1 MKT-PRRRMRLAVFKALFQHEFRRDEDLEQILEEILDET-YDKKAKEDARRYIRGIKENL 58 Query: 60 AYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 +D L+ YL + L L V++ VLR+A YEL D+P +V I+EAIE+AK +G E+ Sbjct: 59 PMIDNLISRYLEKWSLNRLSAVDRNVLRLATYELLFEKDIPIEVTIDEAIEIAKRYGTEN 118 Query: 119 SHKFVNGVLDKAAPVIRPNKK 139 S KFVNG+LD+ A P +K Sbjct: 119 SGKFVNGILDRIAKEHAPKEK 139 >UniRef50_Q6AP93 N utilization substance protein B homolog n=1 Tax=Desulfotalea psychrophila RepID=NUSB_DESPS Length = 141 Score = 130 bits (328), Expect = 1e-29, Method: Composition-based stats. Identities = 45/132 (34%), Positives = 68/132 (51%), Gaps = 7/132 (5%) Query: 6 RRRARECAVQALYSWQLSQNDIA------DVEYQFLAEQDVKDVDVLYFRELLAGVATNT 59 RR ARE A+Q LY + QF V Y L+AGV + Sbjct: 4 RRFAREAALQFLYQDDFIPESADTPGELKERFEQFCEIYQVNKKGRTYALNLIAGVLADQ 63 Query: 60 AYLDGLMKPY-LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 +D L++ ++ + + ++ +LR+A +E++ DVP +VAINEA+E+AK F ++ Sbjct: 64 EAIDRLIEEAAVNWRMSRISATDRNLLRVATFEINFCDDVPAEVAINEAVEIAKRFCGDE 123 Query: 119 SHKFVNGVLDKA 130 S KFVNGVLD Sbjct: 124 SPKFVNGVLDAV 135 >UniRef50_B3QJK9 N utilization substance protein B homolog n=9 Tax=Alphaproteobacteria RepID=NUSB_RHOPT Length = 174 Score = 130 bits (328), Expect = 1e-29, Method: Composition-based stats. Identities = 43/148 (29%), Positives = 72/148 (48%), Gaps = 11/148 (7%) Query: 2 KPAARR-RARECAVQALYSWQLSQNDIADVEYQF--------LAEQDVKDVDVLYFRELL 52 + A RR AR AVQALY + I + +F + + + +FR+++ Sbjct: 23 RKANRRGAARLAAVQALYQMDIGGAGINETFAEFESFWIGNEVEGEQYLPAEAAFFRDIV 82 Query: 53 AGVATNTAYLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIEL 110 AGV +D L+ L+ L + + +AV+R YEL R D+P +V ++E +++ Sbjct: 83 AGVVREQKQIDPLIDDLLARGWPLARIDAILRAVMRAGAYELEHRKDIPARVVVSEYVDV 142 Query: 111 AKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 A +F +D VN VLD+ A R + Sbjct: 143 AHAFVEKDETGMVNAVLDQIARRFRAEE 170 >UniRef50_D0LLT9 Sun protein n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LLT9_HALO1 Length = 501 Score = 130 bits (328), Expect = 1e-29, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 45/127 (35%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R+ A + L L + D EL G LD + Sbjct: 45 RDVAHRVLRQVAKEGAFATLALGAALKSSGLDARDRALVTELCYGSLRQQMRLDRALAAL 104 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 R L +L ++LR+A YE+ VP ++N A+ A+ G + F NGVL Sbjct: 105 TPRGLGKLDAATLSILRVAAYEILFLERVPAHASVNSAVRAARRLGGQRFAGFANGVLRT 164 Query: 130 AAPVIRP 136 A P Sbjct: 165 LAREGEP 171 >UniRef50_C5S6Y6 NusB antitermination factor n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S6Y6_CHRVI Length = 171 Score = 130 bits (328), Expect = 1e-29, Method: Composition-based stats. Identities = 49/154 (31%), Positives = 76/154 (49%), Gaps = 22/154 (14%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQ-----------------DVKDVDV 45 + R ++R A ALY W+L+ +D ++ L + ++ D Sbjct: 10 ISPRSQSRRYAALALYQWRLTGDDPMAIKRHLLDDPKWLDAVAASLNGVSDEDELAAEDR 69 Query: 46 -----LYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPY 100 ELL GV T+ +D + +L R + ++ VE A+LR+ YE+ ++P Sbjct: 70 FNFNVELLDELLNGVPTHIDAIDAQLDRFLDRPISQVDPVELAILRLGAYEILFSDNIPD 129 Query: 101 KVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVI 134 +VAINEA+EL K GA + HK+VNGVLDK A Sbjct: 130 RVAINEAVELTKLLGAHEGHKYVNGVLDKIARRK 163 >UniRef50_B5GBK3 RNA-binding Sun protein n=1 Tax=Streptomyces sp. SPB74 RepID=B5GBK3_9ACTO Length = 402 Score = 130 bits (327), Expect = 2e-29, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 47/128 (36%), Gaps = 5/128 (3%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQD----VKDVDVLYFRELLAGVATNTAYLDGL 65 R A AL + V L E D EL+ G D + Sbjct: 128 RVLAFDALRAVDERDAYANLVLPALLREAREKGGFDARDAALATELVYGTLRGRGTYDAV 187 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 + + R L E+ VL + ++L + +P A++ +ELA+ + +FVN Sbjct: 188 IAACVDRPLREVDPPVLDVLSLGAHQLLG-TRIPTHAAVSATVELARVVLGDGRSRFVNA 246 Query: 126 VLDKAAPV 133 VL + A Sbjct: 247 VLRRIARN 254 >UniRef50_B9L730 Transcription antitermination factor NusB n=2 Tax=Nautiliaceae RepID=B9L730_NAUPA Length = 136 Score = 130 bits (327), Expect = 2e-29, Method: Composition-based stats. Identities = 40/133 (30%), Positives = 78/133 (58%), Gaps = 2/133 (1%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLM 66 ARE +Q LY+ ++ + + + L ++ VK + ++LL GV+ + +D ++ Sbjct: 5 THAREAVIQTLYAQEMGNDQAIEQFDEILKDKKVKGSKAEFAKKLLKGVSEHIDKIDEII 64 Query: 67 KPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 K +L E L +V+K +LR+ +YE+ +D PY++ I+EA+++AK+F + + F+NG Sbjct: 65 KNHLIDWDFERLDKVDKQILRVGIYEILY-TDTPYQIVIDEAVKIAKNFSEDKAKSFING 123 Query: 126 VLDKAAPVIRPNK 138 +LD+ A N+ Sbjct: 124 ILDRVAKEKMSNE 136 >UniRef50_Q5P3H4 N utilization substance protein B homolog n=9 Tax=Betaproteobacteria RepID=NUSB_AZOSE Length = 145 Score = 130 bits (327), Expect = 2e-29, Method: Composition-based stats. Identities = 54/128 (42%), Positives = 70/128 (54%) Query: 11 ECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL 70 E A+Q +Y W LS N + +E D F LL G N L P++ Sbjct: 12 EFALQGIYQWLLSANSMLLIEEHVSQVSGFDKADRELFISLLRGTLNNVDDLQAEFAPFI 71 Query: 71 SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 R + EL VE+A+L +A +EL D PY+V INEAIELAKS+G D H+FVNGVLDK Sbjct: 72 HRAVHELSPVERAILLLATHELKHNLDTPYRVIINEAIELAKSYGGTDGHRFVNGVLDKL 131 Query: 131 APVIRPNK 138 A +R + Sbjct: 132 ATQLRVTE 139 >UniRef50_C8PMR7 Transcription antitermination factor NusB n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PMR7_9SPIO Length = 147 Score = 130 bits (327), Expect = 2e-29, Method: Composition-based stats. Identities = 45/132 (34%), Positives = 66/132 (50%), Gaps = 4/132 (3%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAE---QDVKDVDVLYFRELLAGVATNTAYL 62 RRR R A QALY+W D+ E +++ D D L+ + L G + + Sbjct: 5 RRRGRILAFQALYAWDAGSLSPDDLLPFPWVERTGKELHDEDFLFSQLLFLGAVEHIDEI 64 Query: 63 DGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 DGL+ L L V+KA+LR+ Y L + D ++ INEA+ +A+ +G +DS K Sbjct: 65 DGLIAKNLENWDFNRLKLVDKAILRLGTYSLLFQQDTDPRIVINEAVTIARIYGTDDSFK 124 Query: 122 FVNGVLDKAAPV 133 FVN VLD Sbjct: 125 FVNAVLDSIKRE 136 >UniRef50_A0LI21 N utilization substance protein B homolog n=4 Tax=Deltaproteobacteria RepID=NUSB_SYNFM Length = 151 Score = 130 bits (327), Expect = 2e-29, Method: Composition-based stats. Identities = 44/143 (30%), Positives = 77/143 (53%), Gaps = 7/143 (4%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDV------LYFRELLAGVAT 57 RRR+RE A+Q LY +++ + + D + + E++ GV+ Sbjct: 2 GRRRRSREMALQVLYQMEMAVLPPEEALGLYYQLFDDDEKHRVPAEVRPFAEEIVRGVSL 61 Query: 58 NTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 + A +D ++ L + V++ +LRIA++E+ D+P KV+INEAI+L K+FG+ Sbjct: 62 HRARIDEMITSASEHWRLARMSLVDRNILRIAVFEMLFCFDIPPKVSINEAIDLGKTFGS 121 Query: 117 EDSHKFVNGVLDKAAPVIRPNKK 139 DS F+NG+LD P++ N + Sbjct: 122 PDSGAFINGILDHILPLLEANGR 144 >UniRef50_B4SCZ7 N utilization substance protein B homolog n=2 Tax=Chlorobium/Pelodictyon group RepID=NUSB_PELPB Length = 171 Score = 129 bits (326), Expect = 2e-29, Method: Composition-based stats. Identities = 46/142 (32%), Positives = 75/142 (52%), Gaps = 4/142 (2%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDV-LYFRELLAGVATNT 59 MK RR+ RE +QALY+ ++ DI L E+ + D + +F LL + + Sbjct: 1 MKTY-RRQIREKILQALYTIEIRDTDIDSAAGWLLTEEILADPNAMKFFNMLLKNIKEHM 59 Query: 60 AYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF-GAE 117 +D + + + + ++K ++R+AL E+ D+P KV+INEAIE+AK F + Sbjct: 60 EEIDRYIVKHTFNWDMSRIAIIDKNIIRMALTEILYCEDIPPKVSINEAIEIAKKFNSTD 119 Query: 118 DSHKFVNGVLDKAAPVIRPNKK 139 S KFVNG+LD ++ K Sbjct: 120 KSSKFVNGILDAIFNDLKNEGK 141 >UniRef50_Q7A601 SA1060 protein n=63 Tax=Staphylococcaceae RepID=Q7A601_STAAN Length = 461 Score = 129 bits (326), Expect = 2e-29, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 3/125 (2%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 R A + + L+E ++ +D F E++ G LD +K Sbjct: 30 NVRSLAFDTIQDILNEGAYSNLRINEVLSENELNAMDKALFTEIVYGTVKRKYTLDFYLK 89 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 P++ ++ + +L +++Y+ VP INEA+E+AK G + VNG+L Sbjct: 90 PFVKTKIK---AWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGIL 146 Query: 128 DKAAP 132 Sbjct: 147 RTMMR 151 >UniRef50_Q2YYB7 N utilization substance protein B homolog n=59 Tax=Staphylococcus RepID=NUSB_STAAB Length = 129 Score = 129 bits (325), Expect = 3e-29, Method: Composition-based stats. Identities = 42/130 (32%), Positives = 69/130 (53%), Gaps = 2/130 (1%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +R+ +R A Q L+ ++ +D+ E + D+D + L++GV + LD Sbjct: 1 MSRKESRVQAFQTLFQLEMKDSDLTINEAISFIKDGNPDLDFEFIHWLVSGVKDHEPVLD 60 Query: 64 GLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + PYL + L + ++ +LR+A YE+ SD P KV +NEA+EL K F +D +KF Sbjct: 61 ETISPYLKDWTIARLLKTDRIILRMATYEILH-SDTPAKVVMNEAVELTKQFSDDDHYKF 119 Query: 123 VNGVLDKAAP 132 +NGVL Sbjct: 120 INGVLSNIKK 129 >UniRef50_B4D6X5 NusB antitermination factor n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6X5_9BACT Length = 151 Score = 129 bits (325), Expect = 3e-29, Method: Composition-based stats. Identities = 48/137 (35%), Positives = 70/137 (51%), Gaps = 6/137 (4%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQ-----DVKDVDVLYFRELLAGVATN 58 RR RE AVQ LY LS + E ++ V ++ +L GV + Sbjct: 2 GKRREGREAAVQYLYQIDLSGETPVNAEQFWMLRSGPGKAPVAPKTRIFAEQLALGVRKH 61 Query: 59 TAYLDGLMKPYLSR-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 +DG +K Y + L+ L V++ +LR+A+YEL DV + INEAIE+AK FG + Sbjct: 62 LEEIDGYIKKYTANYELDRLAVVDRNILRVAIYELLHSPDVAPVIIINEAIEVAKKFGTD 121 Query: 118 DSHKFVNGVLDKAAPVI 134 S FVNG+LD+ + Sbjct: 122 KSGGFVNGILDRIKEEV 138 >UniRef50_B4WR53 Ribosomal RNA small subunit methyltransferase B n=4 Tax=Cyanobacteria RepID=B4WR53_9SYNE Length = 491 Score = 129 bits (325), Expect = 3e-29, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 51/140 (36%), Gaps = 9/140 (6%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQD--------VKDVDVLYFRELLA 53 K A + AR+ A +AL + V + L + D EL+ Sbjct: 31 KTAKPKTARQIAFEALRAIDQ-GAFADVVIDRKLKGTQTGTQLGIQLSSQDKGLVTELVY 89 Query: 54 GVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKS 113 G LD L+ + R + + +LR+ Y+L VP ++ ++LAKS Sbjct: 90 GSVRRRRTLDALIDQFGKRPASKQHRDLLQILRLGFYQLRYLDHVPVHAVVDTTVQLAKS 149 Query: 114 FGAEDSHKFVNGVLDKAAPV 133 VN +L + A Sbjct: 150 QRLGKLSGVVNAMLRQYARE 169 >UniRef50_B7IXH3 N utilization substance protein B homolog n=82 Tax=Bacillales RepID=NUSB_BACC2 Length = 130 Score = 129 bits (325), Expect = 3e-29, Method: Composition-based stats. Identities = 44/129 (34%), Positives = 72/129 (55%), Gaps = 5/129 (3%) Query: 4 AARRRARECAVQALYSWQLSQN-DIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 RR ARE A+QALY ++ + L E + + + L+ G N + Sbjct: 1 MKRRTARERAMQALYQMDITGELEPKVAVENTLDEGEETN---EFLESLVVGFVENKEAI 57 Query: 63 DGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D ++ L + LE + V++++LR+A+YE+ ++P+ V INEAIE+AK+FG E+S + Sbjct: 58 DEAIRQNLKKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIEIAKTFGDEESRR 117 Query: 122 FVNGVLDKA 130 F+NGVL Sbjct: 118 FINGVLSNI 126 >UniRef50_A5KNU7 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=A5KNU7_9FIRM Length = 456 Score = 129 bits (325), Expect = 3e-29, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 53/130 (40%), Gaps = 1/130 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNTAYLDGLMKP 68 RE L + V + L + ++ + + + G + +D ++ Sbjct: 8 REIVAAILMEVTENGRYSHIVLREVLTKYQYLEKRERAFITRVTEGTLEHMTEIDYILDC 67 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 + ++++ + +A+LR A+Y++ +P +E+++LA G +VNGVL Sbjct: 68 FSKVKVKKMKPLIRAILRSAVYQIKYMDSIPDHAVCSESVKLAVKKGFSGLRGYVNGVLR 127 Query: 129 KAAPVIRPNK 138 I + Sbjct: 128 SVVKGIDEVE 137 >UniRef50_B1W456 N utilization substance protein B homolog n=7 Tax=Streptomyces RepID=NUSB_STRGG Length = 143 Score = 128 bits (324), Expect = 4e-29, Method: Composition-based stats. Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 5/140 (3%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDV---LYFRELLAGVATNTA 60 AAR +AR+ A Q L+ + V ++ D + EL+ G A Sbjct: 2 AARNKARKRAFQILFEADQRGESVQSVLADWVRLSRTDDRQPPVGEFTMELVEGYAQYAD 61 Query: 61 YLDGLMKPY-LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D L+ Y + ++ + V++++LR+ YEL P V I+EA++LAK F +DS Sbjct: 62 RIDDLIVTYAVDWEIDRMPVVDRSILRLGAYELIWMDGTPDAVVIDEAVQLAKEFSTDDS 121 Query: 120 HKFVNGVLDKAAPVIRPNKK 139 FVNG+L + ++PN + Sbjct: 122 PSFVNGLLARF-KDLKPNLR 140 >UniRef50_D2B6M0 Fmu, rRNA SAM-dependent methyltransferase:Nop2p n=2 Tax=Actinomycetales RepID=D2B6M0_STRRD Length = 515 Score = 128 bits (324), Expect = 4e-29, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 47/126 (37%), Gaps = 1/126 (0%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R AR A L + + L E+ + D EL G D + Sbjct: 53 RDEARNAAYDLLRAVDERDAYANLLMPALLRERRLSGRDAGLATELAYGTLRGLGTYDEV 112 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 + R E+L +R+ +++L K + VP A+ ++L + + K+ N Sbjct: 113 IAACSDRAPEDLDPPLLDAIRLGVHQLLK-TRVPPHAAVGTTVDLVRLRVGTGASKYANA 171 Query: 126 VLDKAA 131 VL K A Sbjct: 172 VLRKVA 177 >UniRef50_Q2LRX5 16S rRNA m(5)C 967 methyltransferase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LRX5_SYNAS Length = 471 Score = 128 bits (323), Expect = 5e-29, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 49/130 (37%), Gaps = 2/130 (1%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDV-DVLYFRELLAGVATNTAYLDGLMKP 68 R AV+ L + + FL + + D L+ G LD +++ Sbjct: 25 RSLAVEILDRIDTTGAFAEPLLDAFLRDHLLDSAPDRHLLTSLVYGTLRMRGRLDWIIQQ 84 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 + + +LR ALY+ +P ++EA+ELAK K VN +L Sbjct: 85 LYQGRFSSMQGGIRNILRTALYQFLFMERIPAFALVDEAVELAK-LRYPGREKLVNALLR 143 Query: 129 KAAPVIRPNK 138 A + N+ Sbjct: 144 NAVRKVSANE 153 >UniRef50_B9LDT2 N utilization substance protein B homolog n=6 Tax=Chloroflexi (class) RepID=NUSB_CHLSY Length = 151 Score = 128 bits (323), Expect = 5e-29, Method: Composition-based stats. Identities = 45/131 (34%), Positives = 72/131 (54%), Gaps = 3/131 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 + R R R A+Q L+ + + I V + L ++ + + R L+ G + +YLD Sbjct: 8 SQRHRVRIAALQILFEVDETDHAIDQVLERRLTDEPMSQESAEFLRRLVFGAWEHRSYLD 67 Query: 64 GLMKPYL-SRLLEELGQVEKAVLRIALYELSKRS--DVPYKVAINEAIELAKSFGAEDSH 120 +++ + + ++ V+KAVLRIAL+EL P K INEA+ELAK FG+++S Sbjct: 68 RIIEEAAPNWPVAQMPGVDKAVLRIALFELLIDDVERTPIKAVINEAVELAKQFGSDNSS 127 Query: 121 KFVNGVLDKAA 131 +FVNGVL Sbjct: 128 RFVNGVLGTVV 138 >UniRef50_UPI0001745093 NusB antitermination factor n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001745093 Length = 145 Score = 128 bits (323), Expect = 5e-29, Method: Composition-based stats. Identities = 43/135 (31%), Positives = 66/135 (48%), Gaps = 2/135 (1%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 M RR R+ A+Q L++ + F + L+ G+ T+ Sbjct: 1 MAIGKRREGRQAAMQFLFAHDVHGKVEDTDRAAFWTLHSATQDIRAHAESLVTGIKTHQV 60 Query: 61 YLDGLMKPYLSR-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D + L E LG V++ +LR+A+YE+ ++VP V INEA+E++K FG + Sbjct: 61 QIDDCIAATLENFRFERLGVVDRNILRLAVYEMLH-TEVPVPVVINEAVEISKVFGDTQT 119 Query: 120 HKFVNGVLDKAAPVI 134 FVNGVLDK A I Sbjct: 120 RAFVNGVLDKIAKRI 134 >UniRef50_C1QBG1 Transcription antitermination factor NusB n=1 Tax=Brachyspira murdochii DSM 12563 RepID=C1QBG1_9SPIR Length = 187 Score = 128 bits (323), Expect = 5e-29, Method: Composition-based stats. Identities = 43/133 (32%), Positives = 79/133 (59%), Gaps = 4/133 (3%) Query: 4 AARRRARECAVQALYSWQLSQN--DIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 ARR+AR AV +LYS+++++ I ++ F ++ + + + R L+ G N Sbjct: 53 GARRQARIYAVMSLYSYEINERKISINNILD-FDYDKKIPENIFAFTRNLVEGTIKNLER 111 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D L++ Y + ++ + V+K+++R+++Y L D+P V I+EA+E+AK F +DS+ Sbjct: 112 IDSLIEKYSNNWDIKRIQYVDKSIIRMSIYSLIFLKDIPKSVVIDEAVEIAKIFSDKDSY 171 Query: 121 KFVNGVLDKAAPV 133 KFVNG+LD Sbjct: 172 KFVNGILDGIQEE 184 >UniRef50_C7MCY2 tRNA/rRNA cytosine-C5-methylase n=2 Tax=Micrococcineae RepID=C7MCY2_BRAFD Length = 551 Score = 128 bits (323), Expect = 5e-29, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 5/136 (3%) Query: 2 KPAARRR----ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVAT 57 +PA R R +R+ A++ L + + V + L V D + EL G Sbjct: 54 RPAERSRRSTPSRQVALEGLRLVREEDSYANLVLPRLLRSHRVSGRDAAFTTELFYGSLR 113 Query: 58 NTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 LD ++ + R LEE+ + VLR+ Y+L V A +E + LA++ Sbjct: 114 AQGRLDAILTACVDRPLEEVDPALRDVLRLGAYQLLDM-SVAPHAATSETVALARAEVGA 172 Query: 118 DSHKFVNGVLDKAAPV 133 FVN VL + Sbjct: 173 GGASFVNAVLRRVGEK 188 >UniRef50_B2KE32 N utilization substance protein B homolog n=1 Tax=Elusimicrobium minutum Pei191 RepID=NUSB_ELUMP Length = 140 Score = 128 bits (322), Expect = 7e-29, Method: Composition-based stats. Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 7/139 (5%) Query: 4 AARRRARECAVQALYSWQLS---QNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 RR ARE A+Q LY DI + + F + + ++ G + A Sbjct: 2 GNRRLAREHALQTLYYADTGKTQGKDINEYKEDFKD--SLDAAGFEFCSGIIDGALEHQA 59 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSD-VPYKVAINEAIELAKSFGAED 118 LD ++ Y L + V++++LR+A YE+ + P I+EAIELAK F E+ Sbjct: 60 ELDKIISAYAKNWSLNRMSVVDRSILRMAAYEMLFSPENTPVAAVIDEAIELAKKFSTEN 119 Query: 119 SHKFVNGVLDKAAPVIRPN 137 S +F+NG+LD+ + Sbjct: 120 SSRFINGLLDQIKKERKNG 138 >UniRef50_Q0TPD3 N utilization substance protein B homolog n=10 Tax=Clostridium RepID=NUSB_CLOP1 Length = 135 Score = 128 bits (322), Expect = 7e-29, Method: Composition-based stats. Identities = 44/135 (32%), Positives = 72/135 (53%), Gaps = 3/135 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDV--KDVDVLYFRELLAGVATNTAY 61 R ++RE +Q Y +++ + F+ +D+ D+D+ Y + L G+ N Sbjct: 1 MNRVKSREYLLQLAYQMEITSETALETFNSFMENEDISKDDLDLAYIKSGLLGIEENKEK 60 Query: 62 LDGLMK-PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD L++ + L + +V ++LRI+ YE+ DVP KV+INEAIEL K + S Sbjct: 61 LDSLIESQLVKWKLNRISKVNLSILRISTYEILFAEDVPGKVSINEAIELCKKYSDNKSV 120 Query: 121 KFVNGVLDKAAPVIR 135 F+NGVLDK ++ Sbjct: 121 SFINGVLDKVYKNMQ 135 >UniRef50_C1ZLP1 Ribosomal RNA small subunit methyltransferase RsmB n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZLP1_PLALI Length = 754 Score = 128 bits (322), Expect = 7e-29, Method: Composition-based stats. Identities = 38/137 (27%), Positives = 62/137 (45%), Gaps = 1/137 (0%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 M+ A R ARE A L + I +V Q + + D EL+ G+ + Sbjct: 295 MQLLAPRTARELAFNVLEAHHAGNKHIGEVFDQAVDRTTLSPSDRRLAYELICGIVRRQS 354 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 L L+ + R +E L + + +++I LY++ +P A++E +ELAK Sbjct: 355 TLQALLMSLVHRQMETLERPLQTIIKIGLYQIFLCQGIPQHAAVHETVELAKRANLRW-G 413 Query: 121 KFVNGVLDKAAPVIRPN 137 FVNGVL A ++ N Sbjct: 414 GFVNGVLRSAIQLMTEN 430 >UniRef50_A1WVG0 N utilization substance protein B homolog n=1 Tax=Halorhodospira halophila SL1 RepID=NUSB_HALHL Length = 155 Score = 128 bits (322), Expect = 7e-29, Method: Composition-based stats. Identities = 59/139 (42%), Positives = 87/139 (62%), Gaps = 6/139 (4%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R RAR VQALY + ++ D+E QFLA + D+DV YFREL+ GV A LD Sbjct: 10 RSRARSKLVQALYQYAVTGASAEDIERQFLA-AGLGDIDVAYFRELIYGVTDRAAELDEQ 68 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 + L R L +L VE+++LR+ +ELS+R +VPY+V I+E++ELA+ FGA+ SH+++NG Sbjct: 69 LSALLDRPLVQLDPVERSILRLGAFELSERLEVPYRVVIDESVELARRFGADQSHRYING 128 Query: 126 VLDKA-----APVIRPNKK 139 VLD+ ++ Sbjct: 129 VLDRFGATVALRAAERGER 147 >UniRef50_Q2LQK4 N utilization substance protein B homolog n=1 Tax=Syntrophus aciditrophicus SB RepID=NUSB_SYNAS Length = 161 Score = 127 bits (321), Expect = 9e-29, Method: Composition-based stats. Identities = 42/142 (29%), Positives = 78/142 (54%), Gaps = 5/142 (3%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 M+ RR ARE A+Q LYS ++ + + + + A + + L+ G + Sbjct: 12 MR--QRRIAREIALQVLYSLEVVEMEAGEAIELYWAHYEAPMDARPFSSLLIEGAWKHRD 69 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D L+ + + + +V+K++LR+A++EL D+P KV +NEAI+L K +G+E+S Sbjct: 70 QIDSLIGGCSANWSIARMSKVDKSILRMAVFELCFCEDIPPKVTMNEAIDLGKVYGSENS 129 Query: 120 HKFVNGVLDKAAPVI--RPNKK 139 F+NG+LD I + +++ Sbjct: 130 GSFINGILDALYAKIHKKNDEQ 151 >UniRef50_Q3ATI5 N utilization substance protein B homolog n=9 Tax=Chlorobiaceae RepID=NUSB_CHLCH Length = 169 Score = 127 bits (321), Expect = 9e-29, Method: Composition-based stats. Identities = 45/142 (31%), Positives = 75/142 (52%), Gaps = 4/142 (2%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDV-LYFRELLAGVATNT 59 MK RR+ RE +QALY+ +L + + L E+ + D + +F LL+ + + Sbjct: 1 MKTY-RRQIREKILQALYTVELRGITLDEAAGWLLTEEILADPNAMKFFNLLLSSIKAHR 59 Query: 60 AYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF-GAE 117 +D + + + ++K ++R+AL E+ D+P KV+INEAIE+AK F + Sbjct: 60 EEIDNYIAQQTFNWDMSRIAIIDKNIIRMALTEILYCEDIPPKVSINEAIEIAKKFNSTD 119 Query: 118 DSHKFVNGVLDKAAPVIRPNKK 139 S KFVNG+LD ++ K Sbjct: 120 KSSKFVNGILDAIFNKLKTEGK 141 >UniRef50_B8DJF1 N utilization substance protein B homolog n=2 Tax=Desulfovibrio RepID=NUSB_DESVM Length = 165 Score = 127 bits (321), Expect = 1e-28, Method: Composition-based stats. Identities = 49/154 (31%), Positives = 70/154 (45%), Gaps = 17/154 (11%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFL--------AEQDVKDVDV-------- 45 K RR R A Q LY + + + D Sbjct: 6 KKPTRRSERALAFQVLYGLSFTPATSEGALRAAYAASPDVADRNAEDEKADRQAPATAPQ 65 Query: 46 LYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAI 104 Y E++ GV A LD + + +E +G+VE +LRIA+YE+ R DVP KVA+ Sbjct: 66 GYAWEVIHGVWKTQAELDEAVSGFSQNWRVERMGRVELTLLRIAVYEMLFRDDVPAKVAM 125 Query: 105 NEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 NEAIEL+K FG ++S F+NG+LD A + + Sbjct: 126 NEAIELSKQFGDDNSRGFINGILDAVARAVESGR 159 >UniRef50_D0WMY6 Ribosomal RNA small subunit methyltransferase B n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WMY6_9ACTO Length = 534 Score = 127 bits (320), Expect = 1e-28, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 2/126 (1%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR A + L + V +A + +D Y L G D ++ Sbjct: 69 ARLVAFEVLRAVDEDDAYANLVLPVEIARAGLNKLDAAYATNLCYGTLRMRGRWDAIISR 128 Query: 69 YLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 R + ++ +LR+ +L + P AI+E + +A++F + + FVN VL Sbjct: 129 CAKGRRIYDIDPPVLDLLRMGCEQLLAM-ETPPHAAIHETVVIARNFFGQGTGGFVNAVL 187 Query: 128 DKAAPV 133 + + Sbjct: 188 RRISEK 193 >UniRef50_D1U9R7 NusB antitermination factor n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U9R7_9DELT Length = 151 Score = 127 bits (320), Expect = 1e-28, Method: Composition-based stats. Identities = 48/143 (33%), Positives = 72/143 (50%), Gaps = 7/143 (4%) Query: 2 KPAARRRARECAVQALYSWQL----SQNDIADVEYQF-LAEQDVKDVDVLYFRELLAGVA 56 +P RR R A Q LY + DI + + E+ + + R L+ GV Sbjct: 9 RPGIRRVGRTLAFQVLYGTHFDDPKNPVDIGTAFERNPMVEEQESETAREFARALVLGVD 68 Query: 57 TNTAYLDGLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG 115 N A +D + + + + +E ++LR++LYE+ +D+P K AINEAIEL+K FG Sbjct: 69 KNLARIDAAIGEHSQHWKFDRIAVIELSILRLSLYEMLF-TDIPVKAAINEAIELSKLFG 127 Query: 116 AEDSHKFVNGVLDKAAPVIRPNK 138 E S FVNG+LD A + K Sbjct: 128 DEKSRGFVNGILDGVARTMPSGK 150 >UniRef50_B8DTW1 N utilization substance protein B homolog n=16 Tax=Actinobacteridae RepID=NUSB_BIFA0 Length = 154 Score = 127 bits (319), Expect = 1e-28, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 64/134 (47%), Gaps = 1/134 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 AR AR A+ LY D + + +A+ + Y E++ GV + +D Sbjct: 1 MARSTARRRALNTLYEADEKGQDFLSLLDERIAQPGAQTPLPEYAIEIVRGVDEHRRDID 60 Query: 64 GLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + + + ++ + +++ +LRIA +E+ DVP KVAI+EA+ L+K+ + + F Sbjct: 61 SQLNTHSTGWKVKRMHAIDRNILRIATWEILYNDDVPDKVAIDEALNLSKTLSDDAAPSF 120 Query: 123 VNGVLDKAAPVIRP 136 ++GVL Sbjct: 121 IHGVLSAIVAAKDK 134 >UniRef50_C0ZC03 N utilization substance protein B n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZC03_BREBN Length = 137 Score = 127 bits (319), Expect = 1e-28, Method: Composition-based stats. Identities = 50/133 (37%), Positives = 71/133 (53%), Gaps = 4/133 (3%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 M RR ARE VQ L+ +++ + D + E + + Y R LL GV N Sbjct: 1 MNGMKRRTAREKVVQCLFQIDMAEVPLTDAVALVMEE---SEENAQYLRYLLDGVLKNLT 57 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D +K YL LE + V++A+LR+A YE+ D P KV +NEAIE+AK F E S Sbjct: 58 EIDAEIKKYLRGWQLERIANVDRAILRLAFYEIMFEQDTPDKVVMNEAIEVAKLFSDEQS 117 Query: 120 HKFVNGVLDKAAP 132 H+++NGVL Sbjct: 118 HRYINGVLSSFLQ 130 >UniRef50_UPI0001B583AE RNA-binding Sun protein n=2 Tax=Actinomycetales RepID=UPI0001B583AE Length = 437 Score = 127 bits (319), Expect = 2e-28, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 47/128 (36%), Gaps = 5/128 (3%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQD----VKDVDVLYFRELLAGVATNTAYLDGL 65 R A AL + V L E D EL+ G D + Sbjct: 29 RVLAFDALRAVDERDAYANLVLPALLREAREKGGFDARDAALATELVYGTLRGRGTYDAI 88 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 + + R L E+ VL + ++L + +P A++ +ELA+ + +FVN Sbjct: 89 IAACVDRPLREVDPPVLDVLSLGAHQLLG-TRIPTHAAVSATVELARVVLGDGRSRFVNA 147 Query: 126 VLDKAAPV 133 VL + + Sbjct: 148 VLRRISRN 155 >UniRef50_C0R001 Transcription antitermination protein NusB n=1 Tax=Brachyspira hyodysenteriae WA1 RepID=C0R001_BRAHW Length = 181 Score = 127 bits (319), Expect = 2e-28, Method: Composition-based stats. Identities = 42/133 (31%), Positives = 78/133 (58%), Gaps = 4/133 (3%) Query: 4 AARRRARECAVQALYSWQLSQ--NDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 ARR+AR AV +LYS++++ I ++ F ++ + + + R L+ G N Sbjct: 47 GARRQARIYAVMSLYSYEINDRKETINEIL-SFDYDKKIPENIFEFTRTLVEGTINNLER 105 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D L++ Y + ++ + V+K+++R+++Y L D+P V I+EA+E++K F +DS+ Sbjct: 106 IDNLIEKYSNNWDIKRIQYVDKSIIRMSIYSLIFLKDIPKSVVIDEAVEISKIFSDKDSY 165 Query: 121 KFVNGVLDKAAPV 133 KFVNG+LD Sbjct: 166 KFVNGILDGIQEK 178 >UniRef50_Q1MS16 N utilization substance protein B homolog n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=NUSB_LAWIP Length = 161 Score = 127 bits (319), Expect = 2e-28, Method: Composition-based stats. Identities = 46/150 (30%), Positives = 71/150 (47%), Gaps = 13/150 (8%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDV------------LYFR 49 K +RR R A Q LYS +Q + + + + + Sbjct: 5 KKHSRRIDRTKAFQVLYSLHFTQINTIETLKEIFLNLPNPLEERNTGIITELDTQISFSW 64 Query: 50 ELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAI 108 +L+ GV N LD ++ + ++ LG++E +LRIA +E+ DVP KV++NEA+ Sbjct: 65 QLVEGVWRNVTRLDKIISQFSQNWRVDRLGKIELTLLRIATFEMYYCPDVPPKVSLNEAL 124 Query: 109 ELAKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 ELA FG E + KF+NG+LD I K Sbjct: 125 ELATCFGDEKARKFINGILDAIIKAIETEK 154 >UniRef50_UPI0001BC34B4 sun protein n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=UPI0001BC34B4 Length = 443 Score = 127 bits (319), Expect = 2e-28, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 49/130 (37%), Gaps = 1/130 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNTAYLDGLMKP 68 R + AL V + L + + ++D + + G LD ++ Sbjct: 8 RNIILDALIEINEKDRFTHIVLPEVLKKYQYLDNIDRSFISRTILGTVERKITLDYIINL 67 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 + + ++ V + +LR++ Y+L V NEA+ L+ G FVNGVL Sbjct: 68 FSKTPVNKMKPVIRNILRMSTYQLIYMEGVKDFAVCNEAVRLSVKKGFTALKGFVNGVLR 127 Query: 129 KAAPVIRPNK 138 A + Sbjct: 128 TIAREKNKIE 137 >UniRef50_B6WQ80 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WQ80_9DELT Length = 157 Score = 127 bits (319), Expect = 2e-28, Method: Composition-based stats. Identities = 51/143 (35%), Positives = 77/143 (53%), Gaps = 7/143 (4%) Query: 2 KPAARRRARECAVQALYSWQLSQN-DIADVEYQFLAEQDVKDVDVL-----YFRELLAGV 55 K A+RR R A Q LY + + DV FL D ++ + + +L+ GV Sbjct: 5 KSASRRGERAQAFQVLYGLSFADATSLEDVRRAFLQSPDHQESEEGELPSGFSWDLVQGV 64 Query: 56 ATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 + LD + + ++ +G+VE +LR+A+YEL R DVP KVAINEA+EL + F Sbjct: 65 WSRRDELDKTISRFSRNWRVDRMGRVELTLLRLAMYELLYRQDVPAKVAINEALELTRQF 124 Query: 115 GAEDSHKFVNGVLDKAAPVIRPN 137 G +++ FVNG+LD AA + Sbjct: 125 GEDNATSFVNGILDAAAKALEKG 147 >UniRef50_B0PFT6 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PFT6_9FIRM Length = 450 Score = 127 bits (319), Expect = 2e-28, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 52/136 (38%), Gaps = 4/136 (2%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK AR A QAL + + + + + + + L V Sbjct: 25 MKK----DARYTAAQALLRMESAGAYSNLTIDSLIEKNGLDAREGAFAAALFYTVLERRL 80 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D ++ Y +R L L + LR+ + +L V A++E++ L ++ G + Sbjct: 81 TIDHVLAAYCARGLASLSKPVLQTLRLGVCQLVWMDGVDDYAAVSESVNLTRALGCAKAS 140 Query: 121 KFVNGVLDKAAPVIRP 136 FVNGVL + Sbjct: 141 GFVNGVLRAFLRADKA 156 >UniRef50_Q1AW09 N utilization substance protein B homolog n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=NUSB_RUBXD Length = 139 Score = 127 bits (319), Expect = 2e-28, Method: Composition-based stats. Identities = 39/126 (30%), Positives = 65/126 (51%), Gaps = 4/126 (3%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +RR AR+ A LY ++ + + ++ A + + Y ++ GV LD Sbjct: 1 MSRRTARKQAFFILYQSDVTGSPAEPLIGRWRAYRGELE---DYAERVVRGVERERERLD 57 Query: 64 GLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ + + V++ +LR+ALYE+ DVP +VA+NEA+ELAK F E++ F Sbjct: 58 AVLDGVSEGWPVWRMSAVDRTILRLALYEMLHVQDVPPEVAVNEAVELAKGFSGEEAPSF 117 Query: 123 VNGVLD 128 V GVL Sbjct: 118 VGGVLR 123 >UniRef50_C5NYN0 Ribosomal RNA small subunit methyltransferase B n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NYN0_9BACL Length = 441 Score = 126 bits (318), Expect = 2e-28, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 3/126 (2%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 AR A + LY+ ++ + V++ D + E++ G N YL+ ++K Sbjct: 5 NARHIAYEVLYTIIQEDGYSNITLNKYFNQYKVEEQDKRFISEVVYGSIKNKLYLEHILK 64 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 Y ++ K +L +++Y+L P I+EA++L K + KFVNG+L Sbjct: 65 SYSKGRVK---PKVKVILLMSIYQLLYMDKTPNFAVIDEAVKLGKKIAGNITGKFVNGIL 121 Query: 128 DKAAPV 133 Sbjct: 122 RNIERN 127 >UniRef50_C7N4M1 Transcription antitermination factor NusB n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N4M1_SLAHD Length = 183 Score = 126 bits (318), Expect = 2e-28, Method: Composition-based stats. Identities = 43/137 (31%), Positives = 74/137 (54%), Gaps = 3/137 (2%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 K R R A+Q LY + + V + + ++ D Y R LL GVA++ Sbjct: 3 KRYDRTLGRRAALQVLYESDILGTPVDKVVDEGVVPEEAALND--YARRLLLGVASHITD 60 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D + ++ + V++A+LRI ++E+ +VP V+INEA+ELAK FG +D++ Sbjct: 61 IDRQISKSSKNWAIDRMPLVDRALLRITVFEMQHVDEVPVAVSINEAVELAKDFGGDDTY 120 Query: 121 KFVNGVLDKAAPVIRPN 137 +FVNG+L + A + + Sbjct: 121 RFVNGILGRIARTMGED 137 >UniRef50_A5G3J8 N utilization substance protein B homolog n=7 Tax=Desulfuromonadales RepID=NUSB_GEOUR Length = 145 Score = 126 bits (318), Expect = 2e-28, Method: Composition-based stats. Identities = 49/144 (34%), Positives = 77/144 (53%), Gaps = 9/144 (6%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQ--------DVKDVDVLYFRELLAGV 55 ++RR RE A+QALYS + D V + + D + EL+ GV Sbjct: 2 SSRREGRELALQALYSSDVEVMDGTTVLKRIMENFGDGSEPAVDAHSRSFSFAAELVNGV 61 Query: 56 ATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 N A +D ++ + + +V+ +LR+A++EL R D+P V INEAIE+AK F Sbjct: 62 VANRAAIDQRIEEKSKNWSISRMARVDLNILRLAVFELFYRPDIPKNVTINEAIEVAKKF 121 Query: 115 GAEDSHKFVNGVLDKAAPVIRPNK 138 GA+DS F+NG+LD+ A ++ + Sbjct: 122 GADDSPAFINGILDEIASLLPDKE 145 >UniRef50_A8SLL0 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SLL0_9FIRM Length = 434 Score = 126 bits (318), Expect = 2e-28, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 60/127 (47%), Gaps = 2/127 (1%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 R+ A++ L + ++ ++ + + +++ D+D + RE++ G N YLD ++K Sbjct: 1 MRKLAIEILCEIKDENSNSTNLLNK--STKNISDLDSKFLREIVYGTLENRIYLDYIIKK 58 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 +++ +LRI++Y++ +P INEA+ L K F + FVNG L Sbjct: 59 LCKLRIKKFNPYILNILRISIYQIIFMDKIPEFAIINEAVNLTKVFKLKKFSSFVNGSLR 118 Query: 129 KAAPVIR 135 Sbjct: 119 NFLRNKE 125 >UniRef50_Q1IIS1 Sun protein n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IIS1_ACIBL Length = 432 Score = 126 bits (318), Expect = 2e-28, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 55/133 (41%), Gaps = 1/133 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 ++ +R A L + Q +++ D+ D EL+ G + LD Sbjct: 1 MSKNPSRATAFDILLRVERDQAFASELL-HSDRLNDLSAPDRGLATELVMGTLRWQSTLD 59 Query: 64 GLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 L+ S+ L +L LR+A Y+L +P A+NE++EL K + F Sbjct: 60 ALVATQSSQPLRKLDIEVLIALRLAAYQLQFLDRIPANAAVNESVELVKRARKRSAVPFA 119 Query: 124 NGVLDKAAPVIRP 136 N VL K + + R Sbjct: 120 NAVLRKISKLPRE 132 >UniRef50_Q6MNX9 N utilization substance protein B homolog n=1 Tax=Bdellovibrio bacteriovorus RepID=NUSB_BDEBA Length = 135 Score = 126 bits (317), Expect = 3e-28, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 72/134 (53%), Gaps = 3/134 (2%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK ARR+ARE A+Q L+ + + + + + + Y ++ GV +N Sbjct: 1 MKLTARRQARELALQVLFQTEFAPQISYQTFLEVFEQS-LDPEVITYADLIVTGVKSNKE 59 Query: 61 YLDGLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSD-VPYKVAINEAIELAKSFGAED 118 +D ++ +E + +++ +LRIA+YE+ +D + +AINEA+E+AK +G D Sbjct: 60 AIDSKIQASSAHWKVERMATIDRNILRIAVYEMRFAADPIKENIAINEAVEIAKKYGTSD 119 Query: 119 SHKFVNGVLDKAAP 132 S FVNG+LD+ Sbjct: 120 SGSFVNGLLDQVGK 133 >UniRef50_A8ST69 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A8ST69_9FIRM Length = 452 Score = 126 bits (317), Expect = 3e-28, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 45/128 (35%), Gaps = 1/128 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNTAYLDGLMKP 68 RE + L + + L + D Y ++ GV LD ++ Sbjct: 6 REVVLSILLDIEKNHTFSNTALGTALRANQFMSKQDRAYITRMVEGVTEKRMRLDYIVNQ 65 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 + + + + + VLR+ YE+ V A N ++LA G FVNGVL Sbjct: 66 FSKTKINKCKPLIRCVLRMGTYEIFYMDSVQDHTACNLCVKLAADHGFGSLRGFVNGVLR 125 Query: 129 KAAPVIRP 136 A Sbjct: 126 NIARNKDS 133 >UniRef50_B7DR17 NusB antitermination factor n=1 Tax=Alicyclobacillus acidocaldarius LAA1 RepID=B7DR17_9BACL Length = 165 Score = 126 bits (317), Expect = 3e-28, Method: Composition-based stats. Identities = 50/139 (35%), Positives = 75/139 (53%), Gaps = 3/139 (2%) Query: 4 AARRRARECAVQALYSWQ-LSQNDIADVEYQFLAEQDVKDV-DVLYFRELLAGVATNTAY 61 R ARECA+QAL A+ LAE+ + D Y EL+ G + Sbjct: 1 MTRHEARECALQALCVLDVQRDLGSAEAIASVLAERGLDAGGDWAYIEELVDGTRRHLGE 60 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D L+ ++ R E +G+VE+ VLR+A YEL ++P AI+EA+++AK+F E S Sbjct: 61 IDELLARHMERWSPERIGRVERNVLRLATYELLFEPELPIASAIDEAVQIAKTFATEQSG 120 Query: 121 KFVNGVLDKAAPVIRPNKK 139 +FVNGVL K P + ++ Sbjct: 121 RFVNGVLAKLLPAVADRRR 139 >UniRef50_A5VKQ4 Sun protein n=14 Tax=Lactobacillus RepID=A5VKQ4_LACRD Length = 449 Score = 125 bits (316), Expect = 3e-28, Method: Composition-based stats. Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 3/140 (2%) Query: 1 MKPA-ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNT 59 MK + ARE A+ AL + Q L + + D D ++ GV + Sbjct: 1 MKTKFQPQNARELALVALEGVVENGAYSNLQVDQLLKKYPLADKDRRLATNIIYGVLQHK 60 Query: 60 AYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 L+ + ++ + L K +L ALY+ VP +E+IE+AK G Sbjct: 61 LTLEYWLNGFIQG--KRLDPWVKTLLLSALYQYHYLERVPDWAVTDESIEIAKRRGNPGI 118 Query: 120 HKFVNGVLDKAAPVIRPNKK 139 KFV GVL P+ + Sbjct: 119 RKFVTGVLHAILRKGLPDLR 138 >UniRef50_A8SLT0 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SLT0_9FIRM Length = 134 Score = 125 bits (316), Expect = 3e-28, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 2/134 (1%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 R ARE ++ +Y + N D F+ D+ +V Y R+ + N +D Sbjct: 1 MTRSEAREWCMKLIYQLSIHNNFKCDEIESFIEYFDLPSSEVKYIRKNCKSIIDNLDNID 60 Query: 64 GLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 ++K L + +++ A+LR+A+ E+ D+P VAINEAIE+A + + S+K Sbjct: 61 NIIKENLEGCWNYNRIAKIDLAILRVAVNEIYYLDDIPESVAINEAIEIANKYSTDASYK 120 Query: 122 FVNGVLDKAAPVIR 135 F+NG+L + Sbjct: 121 FINGILGTIVRAKK 134 >UniRef50_A7BCC1 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BCC1_9ACTO Length = 490 Score = 125 bits (316), Expect = 3e-28, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 55/140 (39%), Gaps = 8/140 (5%) Query: 7 RRA---RECAVQALYSWQLSQNDIADVEYQFLAEQD----VKDVDVLYFRELLAGVATNT 59 R+A R A L+ + + + L + D D + EL+ G Sbjct: 14 RKADEPRRIAYDVLHEVETQGAFTNIILPKALRQARRDGHFSDRDAAFTSELVHGTLRAI 73 Query: 60 AYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 LD ++ ++ R L +L VLR+ ++L VP A++ +++A+ + Sbjct: 74 GRLDWVISRHIDRPLADLDPRALVVLRMGAHQLLDM-RVPDHAAVSATVDVAREHLTDGP 132 Query: 120 HKFVNGVLDKAAPVIRPNKK 139 +FVN VL ++ Sbjct: 133 VRFVNAVLRSITREDPSERE 152 >UniRef50_Q31J86 Ribosomal RNA small subunit methyltransferase B n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31J86_THICR Length = 436 Score = 125 bits (315), Expect = 4e-28, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 49/129 (37%), Gaps = 2/129 (1%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 +R A++ + ++ + LA+ + + + L+ G L+ + Sbjct: 4 NSRYIALKICLTVIEHGRSLSQSLAEGLAQFS-DRRERAFTQNLVLGTLRWQERLEAIRS 62 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 L + L+ + ++ + LY++ D P A++E + L KS + +NGVL Sbjct: 63 HLLKKPLKAKDEDVNQLILLGLYQILYM-DTPEHAAVSETVNLTKSLKKPWARGLINGVL 121 Query: 128 DKAAPVIRP 136 Sbjct: 122 RTFLRDKDS 130 >UniRef50_D0MK26 NusB antitermination factor n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MK26_RHOM4 Length = 165 Score = 125 bits (315), Expect = 4e-28, Method: Composition-based stats. Identities = 42/138 (30%), Positives = 70/138 (50%), Gaps = 2/138 (1%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDV-LYFRELLAGVATNTAYL 62 +RR RE +QALY++++ + V L D + + +L + Sbjct: 2 HSRREVRERVLQALYAYEVGHDTAEHVIDTVLRPALKDDREALRFATQLFLRTINYSEEA 61 Query: 63 DGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D L+ ++ L + +++ +LR+A+ EL D+P KV+INEAIELAK + E S + Sbjct: 62 DRLIADHVKNWDLTRIALIDRLLLRMAICELLAFEDIPPKVSINEAIELAKKYSTEKSGQ 121 Query: 122 FVNGVLDKAAPVIRPNKK 139 FVNGVLD ++ + Sbjct: 122 FVNGVLDAVVLDLQRQGR 139 >UniRef50_B3DQ30 N utilization substance protein B homolog n=7 Tax=Actinobacteridae RepID=NUSB_BIFLD Length = 190 Score = 125 bits (315), Expect = 4e-28, Method: Composition-based stats. Identities = 40/128 (31%), Positives = 67/128 (52%), Gaps = 1/128 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 AR AR+ A+ LY DI + + +A + Y E++ GVA + +D Sbjct: 1 MARSTARKRALNTLYEADEKSQDILSLLDERIAHPGAQTPLPDYAIEIVKGVAEHRRQID 60 Query: 64 GLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + + + + +G V++ +LRIA +E+ DVP KVAI+EA+ LAK+ +DS F Sbjct: 61 MTLDEHSTGWKVRRMGVVDRNILRIAAWEILFTDDVPDKVAIDEALALAKTLCDDDSPAF 120 Query: 123 VNGVLDKA 130 ++G+L Sbjct: 121 IHGLLSAV 128 >UniRef50_C2BWI2 Ribosomal RNA small subunit methyltransferase B n=3 Tax=Mobiluncus RepID=C2BWI2_9ACTO Length = 523 Score = 125 bits (315), Expect = 5e-28, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 49/130 (37%), Gaps = 2/130 (1%) Query: 2 KPAARRR-ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 + RR AR+ A QAL V + + D + EL+ G Sbjct: 38 RSKTRRDPARDVAFQALRRVDQDHAYANLVLPGLIERARLHRRDAAFATELVYGTLRLQG 97 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 D ++ R + L VLR+ ++++ + V A++ ++LA+ + Sbjct: 98 RYDAIIGLLSDRDIAALDSELVTVLRMGIHQILQM-RVEDYAAVDTMVDLARDRLSAGPA 156 Query: 121 KFVNGVLDKA 130 VN VL K Sbjct: 157 GMVNAVLRKV 166 >UniRef50_A4TBX3 N utilization substance protein B homolog n=18 Tax=Actinomycetales RepID=NUSB_MYCGI Length = 164 Score = 125 bits (315), Expect = 5e-28, Method: Composition-based stats. Identities = 47/130 (36%), Positives = 70/130 (53%), Gaps = 5/130 (3%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVL----YFRELLAGVATNTAY 61 R +AR+ AV L+ + A+V A D D+ Y + GV + A+ Sbjct: 10 RHQARKRAVDLLFEAEARGITAAEVAEARNALADNGADDIAPLNPYTVTVARGVTDHAAH 69 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D L+ +L L+ L V++AVLR+A++EL DVP VA++EA+ELAK +DS Sbjct: 70 IDDLISAHLQGWTLDRLPAVDRAVLRVAVWELLHAVDVPEPVAVDEAVELAKQLSTDDSP 129 Query: 121 KFVNGVLDKA 130 FVNGVL + Sbjct: 130 GFVNGVLGQV 139 >UniRef50_A8VXB3 Acetyl-CoA carboxylase, biotin carboxyl carrier protein n=2 Tax=Bacillus RepID=A8VXB3_9BACI Length = 134 Score = 125 bits (314), Expect = 6e-28, Method: Composition-based stats. Identities = 51/134 (38%), Positives = 73/134 (54%), Gaps = 5/134 (3%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 RR AR A+QALY +++ + + L E + D Y L+ V LD Sbjct: 1 MKRRVARIKAIQALYQVEMTGVNPEEAIKTVLEENESMDP---YLLTLVERVLEEMDELD 57 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF-GAEDSHK 121 ++ + L L +V++A++RIA+YE+ DVP VAINEAI+LA+ F G E+S K Sbjct: 58 IKIQDSMDNWQLSRLARVDRAIMRIAMYEMIHSDDVPVSVAINEAIDLARGFSGDEESGK 117 Query: 122 FVNGVLDKAAPVIR 135 FVNGVL AA + Sbjct: 118 FVNGVLSNAAKKLE 131 >UniRef50_C8W9W3 NusB antitermination factor n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8W9W3_ATOPD Length = 167 Score = 125 bits (314), Expect = 6e-28, Method: Composition-based stats. Identities = 42/140 (30%), Positives = 72/140 (51%), Gaps = 7/140 (5%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVE--YQFLAEQDVKDVDVLYFRELLAGVATNT 59 K R RAR A+Q L+ + + + +V L+E + + Y R L G Sbjct: 4 KFFGRTRARSQALQLLFQAEATNRSVLEVLGGDYTLSEGPLDE----YARLLAVGADGIR 59 Query: 60 AYLDGLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 LD ++ Y ++ + V++ +LRI+LYE+ K +V VAINE ++LA+++ +D Sbjct: 60 DDLDDIIAAYSKDWSIDRMPSVDRNLLRISLYEILKVPEVDVAVAINEVVDLARAYCGDD 119 Query: 119 SHKFVNGVLDKAAPVIRPNK 138 S +F+NGVL + I + Sbjct: 120 SPRFINGVLGRIVDDIDAGE 139 >UniRef50_B9XT31 Sun protein n=1 Tax=bacterium Ellin514 RepID=B9XT31_9BACT Length = 444 Score = 125 bits (314), Expect = 6e-28, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 56/145 (38%), Gaps = 8/145 (5%) Query: 1 MKPAA------RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAG 54 MK + ++ R+ AV+ L + ++ L+ + D +EL+ G Sbjct: 1 MKTMSLLSVVSEQKPRQIAVRVLTERLSQEEYTENLLEIELSRARLSAPDRGLCQELVYG 60 Query: 55 VATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 + L+ L+ + +L++ LY++ +P A++E +E+AK Sbjct: 61 IVRWQETLNWLIDRKTEGR--RQKPEMQVLLQLGLYQMFWLDRIPNHAAVHETVEIAKEL 118 Query: 115 GAEDSHKFVNGVLDKAAPVIRPNKK 139 G FVN VL +K Sbjct: 119 GFVAQSGFVNAVLRGYLRERVETEK 143 >UniRef50_C4DPH0 tRNA/rRNA cytosine-C5-methylase n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DPH0_9ACTO Length = 532 Score = 125 bits (314), Expect = 6e-28, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 46/123 (37%), Gaps = 1/123 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R A + L + V + L + V D + EL G LD ++ Sbjct: 29 RRIAYEVLAAVSTQDAYANLVLPKLLRHRGVSGRDAAFATELSYGTLRRRGSLDAVIASA 88 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 R + L Q VLR+ +Y+L + V A N + LA+ FVN V+ K Sbjct: 89 SGRAVSALDQSVADVLRLGVYQLLY-TRVAAHAAANTTVSLARKVCGHRPAGFVNAVMRK 147 Query: 130 AAP 132 + Sbjct: 148 VSR 150 >UniRef50_UPI0000E87F00 transcription antitermination protein NusB n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87F00 Length = 155 Score = 124 bits (313), Expect = 8e-28, Method: Composition-based stats. Identities = 54/136 (39%), Positives = 79/136 (58%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 RR++RE ++++Y ++Q DI ++ + D D + ++ GV N L Sbjct: 15 INNRRKSRELVMKSIYRGIVNQFDINQIKKDIREDPDFVRSDESMYLSIVEGVHNNFDSL 74 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 +K YL R +EL +E A+L +LYEL DVPY+V INEAIE+AKSFG D KF Sbjct: 75 KEEIKTYLDRSYDELSPIELAILFSSLYELKFSLDVPYRVVINEAIEVAKSFGGVDGFKF 134 Query: 123 VNGVLDKAAPVIRPNK 138 +NG+L+KAA R N+ Sbjct: 135 INGILNKAAQHNRKNE 150 >UniRef50_Q983A9 N utilization substance protein B homolog n=3 Tax=Alphaproteobacteria RepID=NUSB_RHILO Length = 155 Score = 124 bits (313), Expect = 8e-28, Method: Composition-based stats. Identities = 46/150 (30%), Positives = 79/150 (52%), Gaps = 11/150 (7%) Query: 1 MKPAARR-RARECAVQALYSWQLSQNDIADVEYQF--------LAEQDVKDVDVLYFREL 51 M+ A +R AR AVQALY ++ + + ++ ++ + ++ D +FR + Sbjct: 1 MRHANKRGAARLAAVQALYQMDVAGSGVFEITAEYEAFRLGKEVDGALYREADAQWFRAI 60 Query: 52 LAGVATNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIE 109 L GV + +D +++ L L L +A+LR +YEL KR DVP V ++E ++ Sbjct: 61 LTGVVEDQKTIDPVIRQALTDDWPLSRLDSTLRAILRAGVYELMKREDVPVAVIVSEYVD 120 Query: 110 LAKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 +AK+F ED K VN VLD+ + +R + Sbjct: 121 IAKAFYEEDEPKLVNAVLDRVSRRVRGEGR 150 >UniRef50_C8WZ45 NusB/RsmB/TIM44 n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WZ45_DESRD Length = 429 Score = 124 bits (312), Expect = 9e-28, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 50/131 (38%), Gaps = 1/131 (0%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR+ A+ L L ++ L ++ D EL+ GV + +L+ + Sbjct: 10 ARQAALSCLEGVLLRDQELQASLDGVLDSASLEPRDRALATELVYGVCRHKTHLETAITR 69 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 ++ L + +L +A YE+ +P +++ A+ K A N VL Sbjct: 70 FVH-PKTRLKPRLRLILSVAAYEMLYLDRIPAYASVDWAVNAVKKRVAVQRAGVANAVLR 128 Query: 129 KAAPVIRPNKK 139 + A + + Sbjct: 129 RLADDLHNRGR 139 >UniRef50_Q1NRI6 NusB antitermination factor n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NRI6_9DELT Length = 135 Score = 124 bits (312), Expect = 9e-28, Method: Composition-based stats. Identities = 47/131 (35%), Positives = 74/131 (56%), Gaps = 1/131 (0%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 M RR+ARE A+QALY ++ D + + Y RELLAG+ + Sbjct: 1 MAVGTRRKARELALQALYQGEMLGVGALDTLPSLCENFEASRRALPYARELLAGIEAHGE 60 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D + + L+ + +++ ++RIA+YE+ R +VP VAI+EA+ELAK +GA+DS Sbjct: 61 AIDAAIDAAAANWRLDRMSYIDRNLMRIAVYEMRWRDEVPAGVAIDEAVELAKRYGADDS 120 Query: 120 HKFVNGVLDKA 130 F+NG+LD Sbjct: 121 PAFINGILDAV 131 >UniRef50_B7APZ1 Putative uncharacterized protein n=1 Tax=Bacteroides pectinophilus ATCC 43243 RepID=B7APZ1_9BACE Length = 374 Score = 124 bits (312), Expect = 9e-28, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 50/128 (39%), Gaps = 1/128 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNTAYLDGLMKP 68 R + L + + Q L++ + + L G + D L+ Sbjct: 11 RAVVLDILLENDKNPGHSNLITGQALSKFQYLPKSQRAFISRLAEGTIERSIEEDWLIDH 70 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 S +++ V + ++R++ Y+L VP NEA++LA+ G FVNGVL Sbjct: 71 VSSVSTKKMKPVIRNIMRMSAYQLKYMDSVPVSAVCNEAVKLARKRGFSSLTGFVNGVLR 130 Query: 129 KAAPVIRP 136 A I Sbjct: 131 SLARDINN 138 >UniRef50_B8ZUK7 N utilization substance protein B homolog n=16 Tax=Actinomycetales RepID=NUSB_MYCLB Length = 190 Score = 124 bits (312), Expect = 1e-27, Method: Composition-based stats. Identities = 43/129 (33%), Positives = 70/129 (54%), Gaps = 4/129 (3%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEY--QFLAEQDVK-DVDVLYFRELLAGVATNTAYL 62 R +AR+ AV L+ + ++ LA+ + Y + GV+ +TA + Sbjct: 8 RHQARKRAVDLLFEAEARDLSPLEIIEVRSALAKSKLDVAPLHPYTVVVAQGVSEHTARI 67 Query: 63 DGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D L+ +L L+ L V++A+LR++++EL DVP VA++EA+ELAK +DS Sbjct: 68 DELIISHLQGWKLDRLPAVDRAILRVSIWELLYADDVPEPVAVDEAVELAKELSTDDSPG 127 Query: 122 FVNGVLDKA 130 FVNG+L K Sbjct: 128 FVNGLLGKV 136 >UniRef50_UPI00016C04B6 transcription termination factor n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C04B6 Length = 135 Score = 124 bits (312), Expect = 1e-27, Method: Composition-based stats. Identities = 43/137 (31%), Positives = 71/137 (51%), Gaps = 4/137 (2%) Query: 4 AARRRARECAVQALYSWQLSQND-IADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 RR+AR C VQ LY+ + ++ + L D+K + E G+ N + Sbjct: 1 MTRRQARICVVQMLYNLSFHDKEQAQEILNENL--LDIKGKVKTFISETFEGIVDNMDAI 58 Query: 63 DGLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D ++ L L + +V+ +LR+A+YE++ D+P KVAINEA+E+A+ + E S K Sbjct: 59 DTEIEANLVDWNLSRIAKVDLMILRLAVYEINYAKDLPPKVAINEAVEIAQEYSTEKSGK 118 Query: 122 FVNGVLDKAAPVIRPNK 138 F+NG+L + N Sbjct: 119 FINGILGNMNKKVSSNG 135 >UniRef50_B2A534 N utilization substance protein B homolog n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=NUSB_NATTJ Length = 139 Score = 124 bits (312), Expect = 1e-27, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 79/139 (56%), Gaps = 4/139 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFL---AEQDVKDVDVLYFRELLAGVATNTA 60 +RR ARE +++ ++ + + + +V + + A++++ + Y +++ +N Sbjct: 1 MSRRTAREASMKLVFQMAFNDDHVDEVGAEDILAQAKEELNYNNYQYIETVVSRTESNLQ 60 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D ++ + ++ L +V+ ++LR+A+ E+ D+P +V+INEA+ELAK F + + Sbjct: 61 KIDEYIEKFSENWKIDRLSKVDLSILRLAISEILFFDDIPTRVSINEAVELAKKFSTDKA 120 Query: 120 HKFVNGVLDKAAPVIRPNK 138 ++NG+LD+ A + + Sbjct: 121 SGYINGILDQVANQLNKAR 139 >UniRef50_Q6AS22 Related to SUN protein (FMU protein) n=1 Tax=Desulfotalea psychrophila RepID=Q6AS22_DESPS Length = 454 Score = 123 bits (311), Expect = 1e-27, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 55/137 (40%), Gaps = 5/137 (3%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK ++R A + L Q + + + ++ + + ++ GV Sbjct: 1 MKTSSRY----IAAETLCQVYKKQQPVKPILEKLCQQKQLNPRERSLAMNMVFGVLRKRQ 56 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG-AEDS 119 YLD L++ + L++L L + LY+L +P +NEA+ K+ + Sbjct: 57 YLDILLRKLSTVRLKKLDPFVHQALTVGLYQLFFLDSIPESAIVNEAVNSCKTAKVHKRL 116 Query: 120 HKFVNGVLDKAAPVIRP 136 H FVNG+L A Sbjct: 117 HGFVNGILRNATRQKEA 133 >UniRef50_C4XHY8 N utilization substance protein B homolog n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XHY8_DESMR Length = 159 Score = 123 bits (311), Expect = 1e-27, Method: Composition-based stats. Identities = 40/141 (28%), Positives = 70/141 (49%), Gaps = 7/141 (4%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAE------QDVKDVDVLYFRELLAGVATN 58 +RR+AR+ A + LY + + D + EL+ GV N Sbjct: 12 SRRKARKQAFEFLYGLSFEPAADERSLLRLFKRCPHDVAEGEDDAGHEFAWELVLGVWRN 71 Query: 59 TAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 +D + + + + +VE +LR+A++E+ R D+P +V++NEAIEL+K +G E Sbjct: 72 QRDIDATIVRFSKNWKISRIAKVELTILRLAVHEILSRPDIPLRVSLNEAIELSKRYGDE 131 Query: 118 DSHKFVNGVLDKAAPVIRPNK 138 +S F+NG+LD A + + Sbjct: 132 NSRNFINGILDALAKAVDSGE 152 >UniRef50_Q3AAM1 N utilization substance protein B homolog n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=NUSB_CARHZ Length = 144 Score = 123 bits (311), Expect = 1e-27, Method: Composition-based stats. Identities = 47/139 (33%), Positives = 72/139 (51%), Gaps = 6/139 (4%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVD-----VLYFRELLAGVATN 58 R ARE A +AL+ + D AE+ + V + REL+ GV Sbjct: 1 MNRHTARELAFKALFGLDFAPEKTLDTLESLWAEKIAEGKIPPEKLVDFSRELVRGVIEK 60 Query: 59 TAYLDGLMKP-YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 LD +++ + + L +V+K +LR+ALYE+ R D+ V+I+EA+ELAK +G E Sbjct: 61 KERLDEIIRRRAIGWDFKRLAKVDKTLLRLALYEMLYRPDIDIPVSIDEAVELAKVYGEE 120 Query: 118 DSHKFVNGVLDKAAPVIRP 136 +S KF+NG+L A I Sbjct: 121 ESPKFINGILGYVAEHIDE 139 >UniRef50_Q03RR0 N utilization substance protein B homolog n=23 Tax=Lactobacillus RepID=NUSB_LACBA Length = 142 Score = 123 bits (311), Expect = 1e-27, Method: Composition-based stats. Identities = 44/129 (34%), Positives = 67/129 (51%), Gaps = 4/129 (3%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKD--VDVLYFRELLAGVATNTA 60 R + RE A Q L++ + D YQ + D Y L+ GV + + Sbjct: 2 TLTRHQIRERAFQMLFALNANPEADHDALYQRVLTDDPNQLVPVPDYLATLVNGVLAHQS 61 Query: 61 YLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 LD + YLS L+ + + + +LR+A YE+ DVP +VA+NEA+ELAK+F + Sbjct: 62 ELDAQIDQYLSTGWQLKRIAKTDLVILRMAFYEIEHVDDVPNRVAVNEALELAKNFSDDR 121 Query: 119 SHKFVNGVL 127 S +F+NGVL Sbjct: 122 SRRFINGVL 130 >UniRef50_C3RII4 SUN protein n=10 Tax=Bacteria RepID=C3RII4_9MOLU Length = 417 Score = 123 bits (311), Expect = 1e-27, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 3/127 (2%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR A+ L +Q Q+ + +L + + D ++ G N YL+ + P Sbjct: 2 ARTTALDVLIKYQNEQSYLNITLNDYLEKSLLSRNDKDLATRIVYGTIQNKLYLEYQLAP 61 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 Y+ +++ EK +L ++LY+L VP I+EA+ LAK + KFVN +L Sbjct: 62 YIQG--KKIKNREKMILLMSLYQLIFLDKVPDYAVIDEAVRLAKKR-DNFAGKFVNAILR 118 Query: 129 KAAPVIR 135 + Sbjct: 119 NFLRNGK 125 >UniRef50_Q2S6K8 N utilization substance protein B homolog n=1 Tax=Salinibacter ruber DSM 13855 RepID=NUSB_SALRD Length = 160 Score = 123 bits (311), Expect = 1e-27, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 65/138 (47%), Gaps = 2/138 (1%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQ-DVKDVDVLYFRELLAGVATNTAYL 62 ++RR ARE ++ LY+ + + D + + D + L Sbjct: 2 SSRRDAREQVMKTLYANEQTDGDAEQALHALVRVPLDEDPSTRDFAEHLFRETLKTMEEA 61 Query: 63 DGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D +++ + + + +++++LR+A EL K +VP KV+++EAIE+AK + S Sbjct: 62 DEIIEKHADNWEIHRIAAIDRSLLRMATTELLKFEEVPPKVSVDEAIEIAKRYSTPRSGT 121 Query: 122 FVNGVLDKAAPVIRPNKK 139 FVNGV+D + + Sbjct: 122 FVNGVIDAILLDLHDQGR 139 >UniRef50_A4U1B3 Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p:Antitermination protein NusB n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4U1B3_9PROT Length = 437 Score = 123 bits (311), Expect = 1e-27, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 46/127 (36%), Gaps = 1/127 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R + L + + + + + D + R L+A +D ++ Sbjct: 15 RSIVLDLLECVLAQKRLLDETLDSEPRLTKLAERDRAFTRMLVATTLRRLGQIDAVIARC 74 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 + R L + +LR+ +L D P AI+ ++LAK+ K +N VL + Sbjct: 75 IDRPLPAKAGRVRNMLRLGAAQLLFL-DTPPHAAISTTVDLAKNSPLAGFAKLINAVLRR 133 Query: 130 AAPVIRP 136 R Sbjct: 134 LDREGRA 140 >UniRef50_C6BYC6 NusB antitermination factor n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BYC6_DESAD Length = 155 Score = 123 bits (310), Expect = 1e-27, Method: Composition-based stats. Identities = 52/139 (37%), Positives = 71/139 (51%), Gaps = 6/139 (4%) Query: 6 RRRARECAVQALYSWQL----SQNDIADVEYQFLAEQDVKDVD-VLYFRELLAGVATNTA 60 RR+ R A Q LY + Q A + D +L+ RELL G+ Sbjct: 10 RRKGRVLAFQVLYGLSFVPPHGGWTTERIYNQSPAVIRETEEDLILFARELLIGIWNAQE 69 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 LD ++ Y +E + +VE A+LR+A+YEL + D+P KV INE IELAK FG +S Sbjct: 70 ELDEVIGRYSKHWKIERIAKVELAILRLAVYELVHKPDIPLKVGINEGIELAKKFGDGNS 129 Query: 120 HKFVNGVLDKAAPVIRPNK 138 F+NG+LD A I K Sbjct: 130 RNFINGILDAVARDIDTGK 148 >UniRef50_C5CBJ2 Ribosomal RNA small subunit methyltransferase RsmB n=10 Tax=Micrococcineae RepID=C5CBJ2_MICLC Length = 543 Score = 123 bits (310), Expect = 2e-27, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 50/139 (35%), Gaps = 5/139 (3%) Query: 3 PAARRR----ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATN 58 P+ R R AR A + S V + + + D + EL G Sbjct: 55 PSQRSRTADPARRVAFGVVRSVHAEDAYANLVLPARIRQARLDRRDAGFATELAYGTLRG 114 Query: 59 TAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 D ++ + R LE++ LR+ ++L VP A++ + L ++ Sbjct: 115 LGLYDAILTRCVDRPLEKIDPPVLDALRLGAHQLLGM-RVPAHAALDATVSLVRAEVGAG 173 Query: 119 SHKFVNGVLDKAAPVIRPN 137 + FVN VL + A Sbjct: 174 ASGFVNAVLRRIAERPLEE 192 >UniRef50_Q022D6 NusB/RsmB/TIM44 n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q022D6_SOLUE Length = 360 Score = 123 bits (310), Expect = 2e-27, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 49/125 (39%), Gaps = 4/125 (3%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR A L + + D+ D E++ GV A LD L+ Sbjct: 6 ARIAAFDILQLVESGGYASDLLLA---RTADLDSRDAGLASEIVFGVLRYRAQLDFLIIH 62 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 Y R + L + LR+A+Y++ VP A+ E++EL K + FVN +L Sbjct: 63 YAGRSRK-LDPEVRTALRMAIYQIRYLERVPPHAAVKESVELVKRARKTSAAGFVNAILR 121 Query: 129 KAAPV 133 + Sbjct: 122 QVDRD 126 >UniRef50_A7VX44 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VX44_9CLOT Length = 134 Score = 123 bits (310), Expect = 2e-27, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 66/134 (49%), Gaps = 3/134 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 R ARE A ++ + + ++ +D+ + + + GV + +D Sbjct: 1 MKRHEAREQAFFLIFERTFQEASLEELVESAQLARDIT--ICGFAQNVFHGVEKHGEEID 58 Query: 64 GLMKPYLSRLLEE-LGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 G+++ + + L +V +VLR A+YE+ +P V+INEA+E+AK++G+ + F Sbjct: 59 GMIEKHCIGWTKNRLSRVAVSVLRTAVYEMLYEEKIPVSVSINEAVEIAKTYGSTEDASF 118 Query: 123 VNGVLDKAAPVIRP 136 VNGVL A + Sbjct: 119 VNGVLGSVAKELES 132 >UniRef50_A7HDY2 N utilization substance protein B homolog n=4 Tax=Anaeromyxobacter RepID=NUSB_ANADF Length = 143 Score = 123 bits (310), Expect = 2e-27, Method: Composition-based stats. Identities = 55/137 (40%), Positives = 81/137 (59%), Gaps = 3/137 (2%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDV-LYFRELLAGVATNTAYLD 63 R RARE A+QALY ++ I D +F + + +V + GVA + +D Sbjct: 4 KRTRARERALQALYQIDVAAEGIDDALSRFWKSFEPVEREVMEDAEGFVRGVAAHRRTID 63 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ + L+ + +V++ VLR+A+YEL R+DVP KVAINEAIEL K +G+E S F Sbjct: 64 DTIEGVSTNWRLDRMAKVDRNVLRLAVYELL-RTDVPVKVAINEAIELGKKYGSESSGAF 122 Query: 123 VNGVLDKAAPVIRPNKK 139 VNGVLDK A + P ++ Sbjct: 123 VNGVLDKVAAGLPPERR 139 >UniRef50_B5YE05 N utilization substance protein B homolog n=2 Tax=Dictyoglomus RepID=NUSB_DICT6 Length = 144 Score = 123 bits (309), Expect = 2e-27, Method: Composition-based stats. Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 8/132 (6%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R R RE +Q L+ L Q + D + L G D + Sbjct: 5 RTRCREKVLQLLFQKDLGQ-------EVEVDFSDFSPQGQAFAYRLYDGALQYKDLADSI 57 Query: 66 MKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + + LE +G +E+ +LR+A+ E+ SD+P V +NEA+ELAK + + ++ +FVN Sbjct: 58 ISRFSKNWKLERMGALERNILRLAIAEMFTFSDIPQAVTVNEAVELAKKYVSPEAGRFVN 117 Query: 125 GVLDKAAPVIRP 136 G+L Sbjct: 118 GILRNIVRNWEE 129 >UniRef50_B6GCG9 Putative uncharacterized protein n=2 Tax=Collinsella RepID=B6GCG9_9ACTN Length = 216 Score = 123 bits (309), Expect = 2e-27, Method: Composition-based stats. Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 5/131 (3%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R AR A+Q L+ ++ + DV D Y ++ GV N +D Sbjct: 10 RTLARSQALQILFQAEVRGESVGDVLAGDFTLSKGPLAD--YAIQIARGVDANRERIDSA 67 Query: 66 MKPYLSRL-LEELGQVEKAVLRIALYELSKR--SDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ + LE + ++ +LR A+YEL + + V INEA+E+AK++G +DS F Sbjct: 68 LRAVSANWSLERMPGADRNLLRAAVYELYFQVADTLDAAVVINEAVEIAKAYGTDDSAGF 127 Query: 123 VNGVLDKAAPV 133 VNGVL + Sbjct: 128 VNGVLGRIVRE 138 >UniRef50_B9E6Q9 N utilization substance protein B homolog n=6 Tax=Staphylococcaceae RepID=NUSB_MACCJ Length = 130 Score = 123 bits (309), Expect = 2e-27, Method: Composition-based stats. Identities = 43/132 (32%), Positives = 73/132 (55%), Gaps = 4/132 (3%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +R +RE A+Q L+ + ++ VE + + DV + EL+ GV + LD Sbjct: 1 MSRTESREHAIQILFQIE-NEAHEISVEDATRFIVEPPNRDV-FADELVHGVISKQNELD 58 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + P+L LE L ++++ +LR++ +EL +D P KV +NEA+ LAK F ++S+KF Sbjct: 59 DKITPHLKSWALERLNKIDRIILRLSAFELLY-TDAPEKVIVNEAVNLAKKFSDDESYKF 117 Query: 123 VNGVLDKAAPVI 134 +NGVL + Sbjct: 118 INGVLSEIIKNK 129 >UniRef50_B0PBD5 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PBD5_9FIRM Length = 161 Score = 122 bits (308), Expect = 3e-27, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 66/137 (48%), Gaps = 3/137 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 R +RE A ++ I ++ Q ++++ D Y L + V N +LD Sbjct: 1 MKRSESREQAFMLIFERSFKDESIDEIIEQAAIGRNLQVDD--YAYRLASDVCGNLPWLD 58 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + Y + + + +V ++LR++L+E+ VP +INEA+ELAK +G +D F Sbjct: 59 EAIASYSKKWKINRMSRVALSILRLSLWEIDHVDTVPAGASINEAVELAKKYGNDDDFSF 118 Query: 123 VNGVLDKAAPVIRPNKK 139 VNGVL +++ Sbjct: 119 VNGVLGAYVRRKDSSEQ 135 >UniRef50_A4XL79 Sun protein n=2 Tax=Clostridia RepID=A4XL79_CALS8 Length = 433 Score = 122 bits (308), Expect = 3e-27, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 57/139 (41%), Gaps = 7/139 (5%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK RR A ++ + +N AD + + K D F EL+ GV Sbjct: 1 MKINTRR----AAFLVIFEIESRKNVNADALMEKYHHKLKKTEDRALFVELVHGVLRYKN 56 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD + + ++ + +LRIA YEL +P +NEA ELAK+ ++ Sbjct: 57 ILDYYINFVAKKGVK--DKKILNILRIATYELLFLDKIPDYATVNEACELAKNV-NKNQK 113 Query: 121 KFVNGVLDKAAPVIRPNKK 139 FVN +L +K Sbjct: 114 DFVNAILRNIIRRKDEIEK 132 >UniRef50_B0MQ18 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MQ18_9FIRM Length = 143 Score = 122 bits (308), Expect = 3e-27, Method: Composition-based stats. Identities = 40/139 (28%), Positives = 71/139 (51%), Gaps = 3/139 (2%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 + R RE A+ L+ +L+ + ++ +++ +L GVA + Sbjct: 4 RKLTRHEMREAALLILFQMKLNPETLDEILEDCKESFEMEYNSQS--VKLAKGVAEHEDE 61 Query: 62 LDGLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 L+G+++ Y SR L+ + + A+++IALYE+ VP KVAINEAIE AK + + Sbjct: 62 LNGIIESYSPSRKLDRISYINLAIMKIALYEMKYCPSVPDKVAINEAIEFAKEYADKTDV 121 Query: 121 KFVNGVLDKAAPVIRPNKK 139 +F+NGVL+ ++ Sbjct: 122 RFINGVLNSYYKDNPTKEQ 140 >UniRef50_B3WEW8 RRNA methylase (Putative) n=77 Tax=Bacilli RepID=B3WEW8_LACCB Length = 446 Score = 122 bits (308), Expect = 3e-27, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 48/129 (37%), Gaps = 2/129 (1%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 R AV+ L + + D ++ GV + LD Sbjct: 1 MTPNNPRLLAVETLSRVTGQGGYSNLTLDHVINSHKLTPRDAGLLTNIVYGVIQHQLTLD 60 Query: 64 GLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 + P++ +L + +L IA+Y+L VP + ++ E+AK G + KFV Sbjct: 61 FYLAPFIKGR--KLDNWIRCLLDIAVYQLQYLDKVPARAVFFDSTEIAKKLGHQGIAKFV 118 Query: 124 NGVLDKAAP 132 GVL A Sbjct: 119 TGVLRNAQR 127 >UniRef50_A8MFJ3 N utilization substance protein B homolog n=2 Tax=Alkaliphilus RepID=NUSB_ALKOO Length = 138 Score = 122 bits (308), Expect = 3e-27, Method: Composition-based stats. Identities = 40/131 (30%), Positives = 71/131 (54%), Gaps = 1/131 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +R+ ARE ++ L+ ++ + L E +++ Y ++L N +D Sbjct: 1 MSRKLARELTMKVLFEMHINNDFNIQRVEHHLFEGSIEEQQKEYIHKVLNEAILNLEAID 60 Query: 64 GLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 +++ Y S L + V+ A+LR+A E+ D+PY+V+INEAIELAK +G++++ F Sbjct: 61 SIIEEYSTSWKLNRIANVDLAILRLAFSEIIYMKDIPYRVSINEAIELAKIYGSDETPNF 120 Query: 123 VNGVLDKAAPV 133 VNG+L K Sbjct: 121 VNGILGKYVEQ 131 >UniRef50_B8H535 N utilization substance protein B homolog n=4 Tax=Caulobacteraceae RepID=NUSB_CAUCN Length = 149 Score = 122 bits (307), Expect = 4e-27, Method: Composition-based stats. Identities = 52/144 (36%), Positives = 71/144 (49%), Gaps = 10/144 (6%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQF--------LAEQDVKDVDVLYFRELLA 53 + R AR AVQALY ++S + V +F + + + D +F +L Sbjct: 5 RIQPRSVARLAAVQALYQMEVSGAGVDSVIREFGEHRFDRDVEGEQLAAADETFFADLAR 64 Query: 54 GVATNTAYLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELA 111 GV TN A +D + L+ LE L +AVLR +EL RSDVP +V INE +E+A Sbjct: 65 GVVTNQAKIDQGIVKRLASGWRLERLDATARAVLRAGAFELMYRSDVPTEVVINEYVEIA 124 Query: 112 KSFGAEDSHKFVNGVLDKAAPVIR 135 KSF F+NG LD A R Sbjct: 125 KSFFEGPESGFINGALDAIARDAR 148 >UniRef50_A6NUZ5 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NUZ5_9BACE Length = 223 Score = 122 bits (307), Expect = 4e-27, Method: Composition-based stats. Identities = 36/153 (23%), Positives = 59/153 (38%), Gaps = 15/153 (9%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDV--------------KDVDVLY 47 + R ARE AV + + ++ L Y Sbjct: 46 RNMTRTNAREIAVHLTFELSFTNQTADELLDTALTRATFALIGEEEPLYAEYPNAKQREY 105 Query: 48 FRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINE 106 EL+ GV + LD + Y + ++ AV+R+A+YE+ DVP AINE Sbjct: 106 ISELVRGVYFHCPELDDYISRYAIGWTFSRIPRIAVAVMRVAMYEILYMQDVPNAAAINE 165 Query: 107 AIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 A+E+AK + + F+NG+L ++ Sbjct: 166 ALEIAKGYETPEVVSFINGILGSFVRKESIPER 198 >UniRef50_A4W3P3 Transcription termination factor n=6 Tax=Streptococcus suis RepID=A4W3P3_STRS2 Length = 140 Score = 122 bits (307), Expect = 4e-27, Method: Composition-based stats. Identities = 45/138 (32%), Positives = 72/138 (52%), Gaps = 5/138 (3%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVL---YFRELLAGVAT 57 M R R+CA+QA+ S + Q + ++ +L +++ + V + L+ GVA Sbjct: 1 MMKNNRHALRKCALQAIVSLEFGQEPVQAAQFSYLYDREEEQEGVEIPLFLLNLVNGVAD 60 Query: 58 NTAYLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG 115 LD + L L+ L ++K ++R+ L+E+ + P +VA+NEAIELAK F Sbjct: 61 YRDDLDKELSSRLKAGWTLDRLTLIDKNIMRLGLFEILHFEETPDRVAVNEAIELAKEFS 120 Query: 116 AEDSHKFVNGVLDKAAPV 133 E S KFVNGVL + Sbjct: 121 DESSAKFVNGVLSQFIKE 138 >UniRef50_Q5FNA1 N utilization substance protein B homolog n=1 Tax=Gluconobacter oxydans RepID=NUSB_GLUOX Length = 160 Score = 122 bits (307), Expect = 4e-27, Method: Composition-based stats. Identities = 42/142 (29%), Positives = 69/142 (48%), Gaps = 15/142 (10%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVK-----------DVDVLYFRELLA 53 +R AR AVQAL+ + S + V QF+ + + D D+ F+E++ Sbjct: 15 SRTIARVAAVQALFQCEQSGDTAETVISQFIRHRRISSTASFDDGHIPDADLKLFQEIVL 74 Query: 54 GVATNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELA 111 GV +D + L L L V +A+LR A++E+ +D P ++ INE +++A Sbjct: 75 GVTRRQDDIDAKLSDVLPEQWPLPRLDPVLRALLRAAVFEI--GTDTPDRIIINEYLDVA 132 Query: 112 KSFGAEDSHKFVNGVLDKAAPV 133 F + D K VNG+LD + Sbjct: 133 HGFFSGDEPKMVNGILDTLSRR 154 >UniRef50_A3TLN6 Putative RNA-binding Sun protein n=2 Tax=Actinobacteria (class) RepID=A3TLN6_9MICO Length = 500 Score = 122 bits (307), Expect = 4e-27, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 50/140 (35%), Gaps = 6/140 (4%) Query: 2 KPAARRR----ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVAT 57 KP+ R + AR A L + + + D + EL G Sbjct: 27 KPSERAKHAEPARLAAYTLLRAVD-DGAYANLEFPAIIRRHKLDSRDAAFATELAFGTLR 85 Query: 58 NTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 + D +++ R + VLR+ ++L VP A ++ + LA++ Sbjct: 86 MQGFYDAVIERAADRSTSTIDSGVLDVLRLGAHQLLGM-RVPTHAAADQTVGLARTVSGA 144 Query: 118 DSHKFVNGVLDKAAPVIRPN 137 + FVN V+ + + R Sbjct: 145 GASGFVNAVMRRISERTREE 164 >UniRef50_C9KK33 Transcription antitermination factor NusB n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KK33_9FIRM Length = 143 Score = 122 bits (307), Expect = 4e-27, Method: Composition-based stats. Identities = 40/140 (28%), Positives = 68/140 (48%), Gaps = 11/140 (7%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEY---------QFLAEQDVKDVDVLYFRELLAG 54 +RR+ARE A+QAL+ L+ + AD E + + D + +L+ G Sbjct: 1 MSRRQAREVALQALFQLDLNPAESADQEEMQETLAIDTALGEAEAMSAHDRAFVAQLVHG 60 Query: 55 VATNTAYLDGLMKPYLS-RLLEELGQVEKAVLRIALYELSK-RSDVPYKVAINEAIELAK 112 N +D + +E + V++ + R+A YE+ + +AINEA+ELAK Sbjct: 61 TRANLEAIDAQIAANSREWKVERMAAVDRNLTRMATYEMCFAEEKLTPNIAINEAVELAK 120 Query: 113 SFGAEDSHKFVNGVLDKAAP 132 +G +DS ++VNG+L Sbjct: 121 KYGTDDSSRYVNGILGAIMK 140 >UniRef50_C6MTY9 Sun protein n=1 Tax=Geobacter sp. M18 RepID=C6MTY9_9DELT Length = 449 Score = 122 bits (307), Expect = 4e-27, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 1/130 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 + + R A L + ++ + L++ +K D EL+ GV LD Sbjct: 1 MSSKNPRRAAFDILLRIEKEKSFADILIDHELSKDMIKGADRGLLTELVYGVLRRQGTLD 60 Query: 64 GLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 ++ + + ++L +LR+ LY+ VP A+NE ++LAK A + F+ Sbjct: 61 HIIGQFSKQRTDKLELYVLLLLRLGLYQCFFLDRVPVSAAVNETVKLAKEL-APRASGFI 119 Query: 124 NGVLDKAAPV 133 N +L A Sbjct: 120 NAILRNADRN 129 >UniRef50_C4G2S0 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G2S0_ABIDE Length = 455 Score = 122 bits (306), Expect = 4e-27, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 49/128 (38%), Gaps = 2/128 (1%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQ-DVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 RE + + V L + + L G YLD ++ Sbjct: 6 REIVLDM-FLSLKDGKPGHIVLKDTLDNYLYLDKASRGFITRLYEGSIEKMIYLDFVINS 64 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 + +++L + K ++ A+Y++ VP AINEA++LAK G FVNGVL Sbjct: 65 FSKTPVKKLKPIIKILMETAVYQIFFMDRVPDSAAINEAVKLAKKRGLAGLSGFVNGVLR 124 Query: 129 KAAPVIRP 136 A Sbjct: 125 NIARNREN 132 >UniRef50_C7H0C2 Transcription antitermination factor NusB n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H0C2_9FIRM Length = 135 Score = 122 bits (306), Expect = 4e-27, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 67/132 (50%), Gaps = 1/132 (0%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 R +AR A+Q ++ + + + + L++ + Y RE+ + V N +D Sbjct: 4 NRSKARTIAMQIIFQIPVHKTTDKVLVDKILSDYKNIGKEEAYIREVFSLVTDNIDAIDA 63 Query: 65 LMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 + + ++ + +V+ A+LR+A+ E+ D+P VA+NEA+ +AK F + S KF+ Sbjct: 64 ELNAKMKGWTIDSIPKVDLAILRLAVAEICYAKDIPKVVAVNEAVRIAKKFSDDKSAKFI 123 Query: 124 NGVLDKAAPVIR 135 NG+L + Sbjct: 124 NGILANIGKDYK 135 >UniRef50_D1B3U2 Transcription antitermination factor NusB n=3 Tax=Campylobacterales RepID=D1B3U2_SULD5 Length = 136 Score = 122 bits (306), Expect = 5e-27, Method: Composition-based stats. Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 2/134 (1%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 A R +ARE + LY+ + I + E+ +++ + L GV + + +D Sbjct: 2 ATRHQARESIITLLYAEDIGNAGIDKFIDELFEEKKIRNQQKEFALGLYQGVKAHLSVID 61 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + +L L E+G +E+A+LR+ YE+ S++ V INEAIELAK E S KF Sbjct: 62 EAINRHLKEWNLSEIGMLERAILRLGGYEILY-SELDNAVVINEAIELAKKLCNETSPKF 120 Query: 123 VNGVLDKAAPVIRP 136 +NGVLD Sbjct: 121 INGVLDAICKEGEA 134 >UniRef50_B9XNZ3 NusB antitermination factor n=1 Tax=bacterium Ellin514 RepID=B9XNZ3_9BACT Length = 185 Score = 122 bits (306), Expect = 5e-27, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 26/153 (16%) Query: 4 AARRRARECAVQALYSWQLSQ-NDIADVEYQFLAEQD----------------------- 39 RR ARE AVQ L+ L+ + + F Q Sbjct: 21 GKRREARERAVQFLFQHDLNPPEKLEEALNHFWDSQRPAALAEDKGGATWGQKVELPAPT 80 Query: 40 -VKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSD 97 + ++ L+ G + D +K Y L + V++ +LR+A++E+ R D Sbjct: 81 AEEAAVRIFADPLIRGALEHRDEADAQIKKYAENWDLHRIAAVDRNILRLAIFEMLHRED 140 Query: 98 VPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 +P V+INEA+++AK F +S KFVNG+LDK Sbjct: 141 IPPVVSINEAVDIAKKFSTYESGKFVNGILDKI 173 >UniRef50_C7Q4P0 Fmu (Sun) domain protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q4P0_CATAD Length = 493 Score = 122 bits (306), Expect = 5e-27, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 54/123 (43%), Gaps = 1/123 (0%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 +AR A++ L + + + + L ++ + D + EL G D ++ Sbjct: 12 QARAAALEVLEAVRTRDAYANLLLPRLLRDRGLSGRDAAFTTELSYGTLRGLGTYDAIIA 71 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 + R L+ + V LRI ++L DVP A++ ++L +S E + +F N +L Sbjct: 72 ACVDRDLDAVDPVVLDALRIGAHQLLAM-DVPPHAAVSTTVDLVRSVSNEGASRFANAIL 130 Query: 128 DKA 130 + Sbjct: 131 RRV 133 >UniRef50_D2B6P7 Transcription antitermination factor NusB n=3 Tax=Actinomycetales RepID=D2B6P7_STRRD Length = 136 Score = 122 bits (306), Expect = 5e-27, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 4/134 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +AR +AR A+ L+ + D V + L + Y ++ GV + A +D Sbjct: 2 SARGKARRRALDILFEAEARSQDPLSVLAERLERAE--PPVNEYTATIVEGVCRHRARID 59 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 L+ Y L+ + V++ +LR YEL DVP V I+E + LA ++S +F Sbjct: 60 ELITTYAEGWTLDRMPAVDRNLLRGGTYELLWMPDVPEGVVISEWVSLASELSTDESPQF 119 Query: 123 VNGVLDKAAPVIRP 136 VNG++ + ++P Sbjct: 120 VNGLMARF-KQLKP 132 >UniRef50_C8WXH1 NusB antitermination factor n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WXH1_ALIAD Length = 166 Score = 122 bits (306), Expect = 5e-27, Method: Composition-based stats. Identities = 51/139 (36%), Positives = 74/139 (53%), Gaps = 3/139 (2%) Query: 4 AARRRARECAVQALYSWQ-LSQNDIADVEYQFLAEQDVKDV-DVLYFRELLAGVATNTAY 61 R ARECA+QAL A+ LAE+ D Y EL+ G + Sbjct: 1 MTRHEARECALQALCVLDVQRDLGSAEAIASALAERGTDAGGDFTYIEELVDGTRRHLDE 60 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D L+ ++ R E +G+VE+ VLR+A YEL ++P AI+EA+E+AK+F E S Sbjct: 61 IDELLARHMERWSPERIGRVERNVLRLATYELLFEPELPIASAIDEAVEIAKTFATEQSG 120 Query: 121 KFVNGVLDKAAPVIRPNKK 139 +FVNGVL K P + ++ Sbjct: 121 RFVNGVLAKLLPAVADRRR 139 >UniRef50_B5FCW8 Ribosomal RNA small subunit methyltransferase B n=14 Tax=Gammaproteobacteria RepID=B5FCW8_VIBFM Length = 451 Score = 122 bits (306), Expect = 5e-27, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 50/129 (38%), Gaps = 3/129 (2%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 R A + +Y + ++ + + ++K D +E+ GV L+ + + Sbjct: 27 NVRAAAAKVIYQVVDQGHSLSSALPKA--QSEIKPRDQALLQEICYGVLRFLPRLESVAQ 84 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 + + L+ +V ++ + +Y+LS +P A+ E +E K+ +N VL Sbjct: 85 SLMDKPLKGKQRVFHHLILVGIYQLSFM-RIPAHAAVAETVEGTKNLKGPKLRGLINAVL 143 Query: 128 DKAAPVIRP 136 Sbjct: 144 RNYQRSQEE 152 >UniRef50_C4ZCZ0 N utilization substance protein B homolog n=5 Tax=Clostridiales RepID=NUSB_EUBR3 Length = 131 Score = 121 bits (305), Expect = 6e-27, Method: Composition-based stats. Identities = 41/131 (31%), Positives = 68/131 (51%), Gaps = 3/131 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVD--VLYFRELLAGVATNTAY 61 R + RE + L+ + + + L ++ D Y E + + + A Sbjct: 1 MTRSKIRENVFKMLFRVEFHDKSELAEQMELLNDELTNPTDEERQYIDEKCSAIIEHMAE 60 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD L+ + + +V+ A++R+A+YE+ D+P KV+INEA+ELAK +GA++S Sbjct: 61 LDALIDEKSTGWKTNRMAKVDLAIIRLAVYEIKFEDDIPTKVSINEAVELAKKYGADESG 120 Query: 121 KFVNGVLDKAA 131 FVNGVL K A Sbjct: 121 AFVNGVLAKFA 131 >UniRef50_P71675 Putative methyltransferase Rv1407/MT1451 n=56 Tax=Actinomycetales RepID=Y1407_MYCTU Length = 457 Score = 121 bits (305), Expect = 6e-27, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 49/129 (37%), Gaps = 2/129 (1%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR A + L + V LA++ + D + EL G LD ++ Sbjct: 16 ARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTYGTCRARGLLDAVIGA 75 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 R + + V +LR+ Y+L R+ V A++ +E A FVNGVL Sbjct: 76 AAERSPQAIDPVLLDLLRLGTYQLL-RTRVDAHAAVSTTVEQAGIEFDSARAGFVNGVLR 134 Query: 129 KAA-PVIRP 136 A R Sbjct: 135 TIAGRDERS 143 >UniRef50_A0JX79 N utilization substance protein B homolog n=3 Tax=Actinomycetales RepID=NUSB_ARTS2 Length = 136 Score = 121 bits (305), Expect = 6e-27, Method: Composition-based stats. Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 3/130 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +AR +AR A+ L+ + DV + + Y E++ GV ++ A +D Sbjct: 2 SARGKARNRALDVLFEAEQRSLSAFDVLRSRREKT--DQIVNPYTLEIVEGVVSHQAAID 59 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ Y LE + V++ +LRI +EL DVP VA++EA+ LAK+ ++S F Sbjct: 60 EFLETYSQGWTLERMPSVDRIILRIGTWELLYNDDVPDGVAVSEAVALAKTLSTDESPSF 119 Query: 123 VNGVLDKAAP 132 +NG+L + Sbjct: 120 INGLLGRLQQ 129 >UniRef50_C4V2M6 Transcription antitermination protein NusB n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V2M6_9FIRM Length = 137 Score = 121 bits (305), Expect = 7e-27, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 66/134 (49%), Gaps = 5/134 (3%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQ---DVKDVDVLYFRELLAGVATNTA 60 +RR ARE A+ L+ + + V LA + + D+ Y L+ G + Sbjct: 1 MSRRHAREAALLTLFQREFDHDRPPIVAAGDLASDAVDGLTEKDLAYANRLVQGTCSVQP 60 Query: 61 YLDGLMKPYLS-RLLEELGQVEKAVLRIALYELSK-RSDVPYKVAINEAIELAKSFGAED 118 +D ++ L + V++ ++R+A YE+ + +AINEA+ELAK +G++D Sbjct: 61 EIDAAIECMAKEWKLHRMAPVDRNLIRMAYYEMCYQEERIDPPIAINEAVELAKKYGSDD 120 Query: 119 SHKFVNGVLDKAAP 132 + ++VNG+L Sbjct: 121 AGRYVNGILAALQK 134 >UniRef50_Q03FY2 tRNA and rRNA cytosine-C5-methylase n=2 Tax=Pediococcus RepID=Q03FY2_PEDPA Length = 444 Score = 121 bits (305), Expect = 7e-27, Method: Composition-based stats. Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 2/128 (1%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR AV L + Q + + D+D E++ GV + LD + Sbjct: 8 ARNLAVDILEKIDE-GSFSNIQLNQDIKSSSLIDIDKNLLTEIVYGVLQHRLTLDFYLAD 66 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 Y+ + E + +LR A++++ VP NE+IE+AK G + K V GVL Sbjct: 67 YIRKP-EMTPRWVINLLRTAVFQMEFLDRVPDFAIFNESIEIAKLRGNDGIRKMVTGVLR 125 Query: 129 KAAPVIRP 136 +P Sbjct: 126 SYQRNGKP 133 >UniRef50_C4FTS3 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FTS3_9FIRM Length = 154 Score = 121 bits (304), Expect = 8e-27, Method: Composition-based stats. Identities = 46/145 (31%), Positives = 72/145 (49%), Gaps = 10/145 (6%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDV------LYFRELLAGV 55 K + R + RE AVQ ++ Q ++ + A + D + Y L+ GV Sbjct: 10 KMSNRHQVREKAVQTIFQLIRPQVPVSLDQACAFALEAGNDPEAGFEGSDAYLDRLVQGV 69 Query: 56 ATNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSK--RSDVPYKVAINEAIELA 111 LD + YL L+ L +++ A+LR+A YEL +VP KVA+NEA+ELA Sbjct: 70 NQTAEELDQRISHYLAEDWTLDRLARIDLAILRVAFYELLYVSEDEVPSKVAVNEAVELA 129 Query: 112 KSFGAEDSHKFVNGVLDKAAPVIRP 136 K+F + S +F+NGVL ++ Sbjct: 130 KTFSDDKSKQFINGVLAGLLKDLKN 154 >UniRef50_D2RJI2 NusB antitermination factor n=2 Tax=Acidaminococcus RepID=D2RJI2_ACIFE Length = 139 Score = 121 bits (304), Expect = 9e-27, Method: Composition-based stats. Identities = 45/136 (33%), Positives = 73/136 (53%), Gaps = 6/136 (4%) Query: 4 AARRRARECAVQALYSWQLSQN-DIADVEYQFLAEQDVKD---VDVLYFRELLAGVATNT 59 +RR AR A+++L++ + S + E+D++D D+ Y +L+ GV N Sbjct: 1 MSRRDARTIAMRSLFALEFSPEQSPEETVRTMAEEEDIQDTRKKDLAYALDLVKGVRENQ 60 Query: 60 AYLDGLMKPY-LSRLLEELGQVEKAVLRIALYELSKRSD-VPYKVAINEAIELAKSFGAE 117 LDG + L+ + +++ +LRIA YE+ + VP VAINEA+ELAK +G + Sbjct: 61 EALDGELNGLDAKWTLKRMNGIDRNLLRIAGYEMFCSPEPVPPAVAINEAVELAKVYGGD 120 Query: 118 DSHKFVNGVLDKAAPV 133 DS F+NG+L Sbjct: 121 DSPAFINGLLGSLVKK 136 >UniRef50_B8FS79 Sun protein n=2 Tax=Desulfitobacterium hafniense RepID=B8FS79_DESHD Length = 453 Score = 120 bits (303), Expect = 1e-26, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 2/124 (1%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 +R AVQ L + + V + L + + L+ G + LD ++ Sbjct: 6 SRALAVQILRRIEEEKAYANLVMQKALHDLS-DPRERQLATLLVNGTLKHRLTLDYALRR 64 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 +L + L +L + +LRI+ ++ S +P VAINE +EL K VN VL Sbjct: 65 HLRKPLSQLPHEVRWILRISALQILYLSRIPAAVAINEGVELTKKQQG-KYTSLVNSVLR 123 Query: 129 KAAP 132 + Sbjct: 124 RVLE 127 >UniRef50_Q0ABQ3 N utilization substance protein B homolog n=2 Tax=Ectothiorhodospiraceae RepID=NUSB_ALHEH Length = 178 Score = 120 bits (303), Expect = 1e-26, Method: Composition-based stats. Identities = 56/146 (38%), Positives = 76/146 (52%), Gaps = 24/146 (16%) Query: 18 YSWQLSQNDIADVEYQFLA-----------------EQDVKDVDVLYFRELLAGVATNTA 60 Y WQ++ D+ +E Q L +D YFR LL GV Sbjct: 29 YQWQMTGQDLGAIEAQHLEIDPEEPPVEAGDDEHYPRYPHDGLDRPYFRALLHGVPARLN 88 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD ++P L R L L +EKA+LR+ +ELS+R D P++V INEA+ LAK FGAE SH Sbjct: 89 DLDQALEPLLDRPLRTLDPLEKALLRLGAWELSERMDTPWRVIINEAVNLAKRFGAEQSH 148 Query: 121 KFVNGVLDKAAP-------VIRPNKK 139 +++NGVLDK A I ++K Sbjct: 149 RYINGVLDKLARGLPLRATEIEADRK 174 >UniRef50_Q2SQX3 Sun protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SQX3_HAHCH Length = 447 Score = 120 bits (303), Expect = 1e-26, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 51/136 (37%), Gaps = 6/136 (4%) Query: 4 AARRR---ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 RR+ AR A + L + + L V++ D + + L G + Sbjct: 1 MKRRKTLSARAAAAKTLRAVAEEGRSLTTAMAPALE--QVEENDRSFLQALCYGACRHYL 58 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 L+ + L + ++ + +L L++L+ P V+INE + + K + Sbjct: 59 TLEHWLGQLLRQPIKAKERDIHFLLLSGLHQLAFMDK-PAHVSINETVNVTKELNKLWAT 117 Query: 121 KFVNGVLDKAAPVIRP 136 K VNGVL Sbjct: 118 KLVNGVLRSFQRRKDE 133 >UniRef50_A5GRG8 Ribosomal RNA small subunit methyltransferase B n=19 Tax=cellular organisms RepID=A5GRG8_SYNR3 Length = 454 Score = 120 bits (302), Expect = 1e-26, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 44/129 (34%), Gaps = 1/129 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R A + L + + L + D EL G LDG + Sbjct: 32 RLVAWRVLEAV-GDGAYADLALERELKRSKLSPRDRGLATELAYGAIRQRRRLDGWLDLL 90 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 + + +L + L ++ VP A++ A+ELAK + VNGVL Sbjct: 91 GKVPAAKQPPRLRWLLHVGLQQILLMDRVPASAAVSTAVELAKRERLQRLAPVVNGVLRA 150 Query: 130 AAPVIRPNK 138 A + + Sbjct: 151 AVRAVEAGE 159 >UniRef50_A4XLC1 N utilization substance protein B homolog n=2 Tax=Clostridia RepID=NUSB_CALS8 Length = 142 Score = 120 bits (302), Expect = 1e-26, Method: Composition-based stats. Identities = 43/134 (32%), Positives = 74/134 (55%), Gaps = 6/134 (4%) Query: 4 AARRRARECAVQALYSWQLSQNDIADV-----EYQFLAEQDVKDVDVLYFRELLAGVATN 58 RR+ RE ++ LY+++ N+ + + +++ K++D Y ++LL GV N Sbjct: 2 HKRRKTRELCMKILYAYRFQNNEYDIIEFLNKFKELNPDENFKEIDEEYLKKLLTGVIRN 61 Query: 59 TAYLDGLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 +D L++ Y L + VE ++RIA+YEL ++P VAI+EA++L+ FG E Sbjct: 62 QQLIDNLIEKYSKDWPLSRIPMVELELMRIAIYELLFEEEIPISVAIDEAVDLSSIFGVE 121 Query: 118 DSHKFVNGVLDKAA 131 + FVNG+L A Sbjct: 122 KAPSFVNGILGSIA 135 >UniRef50_C4XT41 rRNA (Cytosine-C(5)-)-methyltransferase n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XT41_DESMR Length = 477 Score = 120 bits (301), Expect = 2e-26, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 50/135 (37%), Gaps = 5/135 (3%) Query: 9 ARECAVQALYSWQLS----QNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 AR A+ L S D+ LA+ + D EL+ G LD Sbjct: 45 ARRIALTVLGRVLPSPKSPGQDVQAALDVALADSTLDPRDRGLATELVYGYLRLCGRLDY 104 Query: 65 LMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 ++ +L + + +L +A YE+ + VP +++ A+ + G + N Sbjct: 105 ILAQFLKNP-TAVPLAVRRILGLAAYEILHCAKVPAYASVDWAVSAVRKAGGKGLSGMAN 163 Query: 125 GVLDKAAPVIRPNKK 139 VL + A ++ Sbjct: 164 AVLRRVAADPGAFEE 178 >UniRef50_Q1Q7P9 Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q7P9_9BACT Length = 462 Score = 120 bits (301), Expect = 2e-26, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 54/128 (42%), Gaps = 1/128 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R +++ L ++ + + +V D EL+ G+ + LD ++ + Sbjct: 4 RLESIRILRKVDEKDVLAQELVEERCQQTNVSRRDKHLLLELVNGITRHRLSLDTILSFF 63 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF-GAEDSHKFVNGVLD 128 +++ LR+ +Y++ +P+ A+N ++EL K+ D+ +F N +L Sbjct: 64 SKIPPQKIEPWLLYALRLGIYQMIFLDKIPHSAAVNTSVELVKNLIRRPDAARFANAILR 123 Query: 129 KAAPVIRP 136 I+ Sbjct: 124 AVDRTIKN 131 >UniRef50_Q4JVG6 N utilization substance protein B homolog n=5 Tax=Corynebacterium RepID=NUSB_CORJK Length = 202 Score = 120 bits (301), Expect = 2e-26, Method: Composition-based stats. Identities = 38/140 (27%), Positives = 70/140 (50%), Gaps = 6/140 (4%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVK----DVDVLYFRELLAGVAT 57 + +R +AR AV L+ + D ++ + ++ Y ++++ GVAT Sbjct: 19 RHGSRYKARRRAVDILFEAEFRDIDPVEIVEERISLAKDSANQVKPVPEYTQQIVPGVAT 78 Query: 58 NTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG 115 N LD + +L L+ L V++AVLR+A +EL DVP +VA+ E +ELA + Sbjct: 79 NLDALDEAIALHLSSDWQLDRLPAVDRAVLRVAAWELKFNDDVPPQVAVVEGVELASEYS 138 Query: 116 AEDSHKFVNGVLDKAAPVIR 135 + + +++ VLD ++ Sbjct: 139 HDKAPSYIHAVLDGINKDLQ 158 >UniRef50_C1I679 NusB antitermination factor n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I679_9CLOT Length = 134 Score = 120 bits (301), Expect = 2e-26, Method: Composition-based stats. Identities = 48/134 (35%), Positives = 79/134 (58%), Gaps = 3/134 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVK--DVDVLYFRELLAGVATNTAY 61 R+R+RE A++ L+ LS+N + + F+ + ++ +D+ Y + +LA V N Sbjct: 1 MNRKRSREIAMELLFGMTLSKNTLEETIETFIEDYEMNLKTIDLEYIKGILAKVEENITV 60 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D ++ L+ ++ + +V ++LR+A+ E+ DVP KVAINEAIEL K + E S Sbjct: 61 IDQKIEEALTNWKIDRVSKVNISILRLAIAEMLYVEDVPEKVAINEAIELTKKYSDEKSV 120 Query: 121 KFVNGVLDKAAPVI 134 FVNGVLDKA + Sbjct: 121 SFVNGVLDKAFKSL 134 >UniRef50_A6LU43 N utilization substance protein B homolog n=6 Tax=Clostridium RepID=NUSB_CLOB8 Length = 133 Score = 119 bits (300), Expect = 2e-26, Method: Composition-based stats. Identities = 47/133 (35%), Positives = 78/133 (58%), Gaps = 3/133 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLA--EQDVKDVDVLYFRELLAGVATNTAY 61 R+ +RE A++ L+ LS++ + D F+ E D+K++D+ Y +++L GV N Sbjct: 1 MNRKLSREKAMELLFGMTLSKDTMEDAVEAFVENYEGDIKEIDLTYVKQVLIGVNNNKEA 60 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D +++ L +E + +V ++LRIA YEL +VP VAINEA+E+ + + E S Sbjct: 61 IDKVIQENLHNWKIERISKVNLSILRIATYELLYDKEVPRGVAINEALEITRRYSDEKSV 120 Query: 121 KFVNGVLDKAAPV 133 F+NGVLDK Sbjct: 121 SFINGVLDKIKQD 133 >UniRef50_D1PM68 Ribosomal RNA small subunit methyltransferase B n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM68_9FIRM Length = 437 Score = 119 bits (300), Expect = 2e-26, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 4/124 (3%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAE--QDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 R AV+AL + + V L + ++ D + + V LD L+ Sbjct: 4 RRLAVKALLHQEQAG-YANLVLDAELKKCTPPLEGRDAAFAARIFYTVLEYQPLLDFLLD 62 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 + + + L +A+LR L + +VP A+NE+++L K+ G + VN VL Sbjct: 63 RFSKKPVARLDAPVRAILRAGLAQARFM-EVPLPAAVNESVKLTKAMGKTSAAGMVNAVL 121 Query: 128 DKAA 131 +AA Sbjct: 122 RRAA 125 >UniRef50_B0NZC1 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0NZC1_9CLOT Length = 167 Score = 119 bits (300), Expect = 2e-26, Method: Composition-based stats. Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 3/137 (2%) Query: 4 AARRRARECAVQALYSWQL--SQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 R RE + L+ + + VE F +++ + E + + Sbjct: 31 MKRSEVREHIFRILFCVEFCEKEEFEDQVELYFHGHENINEKTQKEITEKTENLIEHLDE 90 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D + + + LE LG+ E ++LR+A YE+ VP KVAINEA+ELAK + E + Sbjct: 91 IDEQISAHTNAWNLERLGKAELSILRLATYEILLDEQVPRKVAINEAVELAKKYCNEKAA 150 Query: 121 KFVNGVLDKAAPVIRPN 137 F+NGVL K + Sbjct: 151 PFINGVLSKIGQDMDEE 167 >UniRef50_B0REX0 N utilization substance protein B homolog n=4 Tax=Actinobacteria (class) RepID=NUSB_CLAMS Length = 137 Score = 119 bits (300), Expect = 2e-26, Method: Composition-based stats. Identities = 40/133 (30%), Positives = 69/133 (51%), Gaps = 6/133 (4%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDV----LYFRELLAGVATNT 59 +AR +AR+ A+ LY + I ++ + D Y RE+ G + Sbjct: 2 SARTKARKRALDVLYVADIRGESIPATLA-VEQQRAAAEPDRQASWAYAREIAEGFVEHQ 60 Query: 60 AYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 +D L++ Y L + V++A+LRI ++E+ +DVP VAI+E+++LA S ++ Sbjct: 61 DEIDELIETYSVNWTLARMPAVDRAILRIGIWEILFNADVPDGVAISESVDLASSLSTDE 120 Query: 119 SHKFVNGVLDKAA 131 S FVNG+L + A Sbjct: 121 SASFVNGMLARIA 133 >UniRef50_A5EVR1 Transcription antitermination factor NusB n=2 Tax=Cardiobacteriaceae RepID=A5EVR1_DICNV Length = 145 Score = 119 bits (300), Expect = 2e-26, Method: Composition-based stats. Identities = 53/131 (40%), Positives = 76/131 (58%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R +AR +Q LY WQ+ +D V+ + + ++D YF A + TNT LD Sbjct: 14 RSQARRQLLQGLYQWQIIGDDAEIVKENQMIDARAGEIDHDYFDAAWAYITTNTEQLDCC 73 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 ++ R + L VE A+L I +YEL++R D+ V INEA+ELAK FG++D +KFVNG Sbjct: 74 AADFIRRNMATLDPVEHAILWIGIYELTQRIDIHQNVIINEAVELAKQFGSDDGYKFVNG 133 Query: 126 VLDKAAPVIRP 136 VLD+ A R Sbjct: 134 VLDQCAKRHRA 144 >UniRef50_Q3AC21 Sun protein n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AC21_CARHZ Length = 440 Score = 119 bits (300), Expect = 3e-26, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 49/130 (37%), Gaps = 3/130 (2%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 RE ++ L + + + + + + +A K D + EL GV LD + Sbjct: 4 RELVIKTLVEVEKNNSYVNLLLPKLIANLA-KKEDKDFVVELTYGVLKQLKLLDYMAGKL 62 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 L + +L +R+ LY+L VP AINE +E K VNGVL Sbjct: 63 LKKR-SKLPPFVINAIRVGLYQLYFLDKVPTYAAINETVEAVKR-NYRGFTGVVNGVLRN 120 Query: 130 AAPVIRPNKK 139 K Sbjct: 121 FIRRREEITK 130 >UniRef50_B5YHQ2 N utilization substance protein B homolog n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=NUSB_THEYD Length = 151 Score = 119 bits (300), Expect = 3e-26, Method: Composition-based stats. Identities = 39/141 (27%), Positives = 77/141 (54%), Gaps = 11/141 (7%) Query: 4 AARRRARECAVQALYSWQLSQN--------DIADVEYQFLAEQ--DVKDVDVLYFRELLA 53 RR+ARE +Q LY+ ++++N + + +F + + +L+ Sbjct: 1 MKRRKAREYVLQFLYACEMNENTQKICNYNFLQEEIEKFWERNYEEQNSDIKSFANQLIE 60 Query: 54 GVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAK 112 G + +D +++ Y + +E + ++K +LR ++YE+ R D+PY+V INEA+E+AK Sbjct: 61 GTIEHIDIIDKIIQKYADKWNIERMITIDKNILRFSIYEILYRQDIPYQVTINEAVEIAK 120 Query: 113 SFGAEDSHKFVNGVLDKAAPV 133 + ++S F+NG+LD+ A Sbjct: 121 KYSTKESAAFINGILDRIAKE 141 >UniRef50_C8WEQ4 NusB antitermination factor n=4 Tax=Zymomonas mobilis RepID=C8WEQ4_ZYMMN Length = 157 Score = 119 bits (300), Expect = 3e-26, Method: Composition-based stats. Identities = 41/144 (28%), Positives = 67/144 (46%), Gaps = 10/144 (6%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQF--------LAEQDVKDVDVLYFRELLAG 54 AR AR AVQALY ++ + + + +F + + + +F +++ G Sbjct: 10 KNARSAARLAAVQALYQREMEKTPLNILLDEFHQYRLGATIEDATYTKAEPSFFDDIVRG 69 Query: 55 VATNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAK 112 V T +D ++ L L+ L + + +LR YEL R DVP I+E I++A Sbjct: 70 VGTRCEEIDRVISENLSERWSLDRLDRPMRQILRAGTYELLARPDVPTATIISEYIDVAN 129 Query: 113 SFGAEDSHKFVNGVLDKAAPVIRP 136 +F FVNG+LD A +R Sbjct: 130 AFYDRQEKNFVNGLLDTVAKKLRS 153 >UniRef50_B1C5S4 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C5S4_9FIRM Length = 450 Score = 119 bits (299), Expect = 3e-26, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 55/131 (41%), Gaps = 1/131 (0%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 +R A + L ++ + LA + + D ++ GV L+ ++ Sbjct: 10 SRVSAYKVLSEVLMTGAYSNIALTKHLASIKI-EADRRLCTNIVHGVIKKINKLEYVLST 68 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 + + EL + K L I LY++ + +P +N+++ L K F + + FVNG+L Sbjct: 69 LSNTPVNELDERVKISLYIGLYQIIYLNKIPEYAIVNDSVNLVKMFVGKKASGFVNGILR 128 Query: 129 KAAPVIRPNKK 139 A K+ Sbjct: 129 NALRKKHELKE 139 >UniRef50_Q7USA9 N utilization substance protein B homolog n=2 Tax=Planctomycetaceae RepID=NUSB_RHOBA Length = 145 Score = 119 bits (299), Expect = 3e-26, Method: Composition-based stats. Identities = 43/139 (30%), Positives = 67/139 (48%), Gaps = 3/139 (2%) Query: 2 KPAARRRARECAVQALYSWQLSQ-NDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 + + RRRARE +Q LY L+ D A + + V + ELL G Sbjct: 4 RMSTRRRAREIVLQLLYEADLNDWRDAATSRKFIRSRLQGRKVLTDFAAELLDGTMARRD 63 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D + + L + ++ VLR+ YE+ S P +VAI+EA+ LAK +G E+S Sbjct: 64 DIDAKLTKLSTNWALHRMPVTDRNVLRLGAYEILY-SGTPGQVAISEALTLAKRYGGENS 122 Query: 120 HKFVNGVLDKAAPVIRPNK 138 +F+NGVLD+ + Sbjct: 123 PRFINGVLDRLFKYHSNPE 141 >UniRef50_C9LUP3 Transcription antitermination factor NusB n=2 Tax=Selenomonas RepID=C9LUP3_9FIRM Length = 160 Score = 119 bits (299), Expect = 3e-26, Method: Composition-based stats. Identities = 45/140 (32%), Positives = 70/140 (50%), Gaps = 11/140 (7%) Query: 4 AARRRARECAVQALYSWQLSQNDIAD--------VEYQFLAEQDVK-DVDVLYFRELLAG 54 +RR+ARE A+Q L+ +L+ A + E V+ D Y L+ G Sbjct: 21 MSRRQAREAALQTLFQLELNPPSEAASEEACQMWALDAAVEEMPVETKRDYSYAASLVRG 80 Query: 55 VATNTAYLDGLMKPYL-SRLLEELGQVEKAVLRIALYELSK-RSDVPYKVAINEAIELAK 112 + A +D + L+ + V++ ++RIALYE+ V +AINEA+ELAK Sbjct: 81 TREHLAAIDEEIAASTHDWKLDRMTGVDRNIVRIALYEMKYGAEKVDVGIAINEAVELAK 140 Query: 113 SFGAEDSHKFVNGVLDKAAP 132 FG +DS ++VNG+L A Sbjct: 141 KFGTDDSSRYVNGILGGLAR 160 >UniRef50_C9RN69 NusB antitermination factor n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RN69_FIBSS Length = 146 Score = 119 bits (299), Expect = 3e-26, Method: Composition-based stats. Identities = 42/134 (31%), Positives = 70/134 (52%), Gaps = 1/134 (0%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 M + R AR A+Q LY+ ++S +AD L Q ++D Y +L+ V + A Sbjct: 1 MAQVSFRPARVFAMQLLYAMEISGGTVADALPGVLEAQPLQDNMKKYGMKLVDLVLAHKA 60 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 LD ++ + +E + +++ VLRIA+ EL ++P KV I+EA+++A F + S Sbjct: 61 ELDSEIEACSAHWGIERMATLDRIVLRIAMVELLYVPEIPMKVVISEAVQVAAKFSTDSS 120 Query: 120 HKFVNGVLDKAAPV 133 FVNG+L Sbjct: 121 GTFVNGLLAGFLQK 134 >UniRef50_C2D814 Putative uncharacterized protein n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D814_9ACTN Length = 239 Score = 119 bits (299), Expect = 3e-26, Method: Composition-based stats. Identities = 43/136 (31%), Positives = 70/136 (51%), Gaps = 7/136 (5%) Query: 6 RRRARECAVQALYSWQLSQNDIADVE--YQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 R AR A+Q ++ + + DV L+E + D + + L G LD Sbjct: 13 RTLARSQALQLMFQAESRNMQVCDVLATNYLLSEGPLDD----FGKRLALGTDELRDKLD 68 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 L+ ++ L L V++ +LR+ALYE+ K DV V INE++ LAK++G ++S F Sbjct: 69 ALISRVITNWNLNRLLSVDRNILRLALYEMIKVDDVDIAVTINESVNLAKAYGTDESSHF 128 Query: 123 VNGVLDKAAPVIRPNK 138 VNGVL + A ++ + Sbjct: 129 VNGVLGQVARMMENGR 144 >UniRef50_D1U6T4 NusB/RsmB/TIM44 n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U6T4_9DELT Length = 425 Score = 119 bits (299), Expect = 3e-26, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 1/124 (0%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR A++AL S +DI L+ + D E+ G + ++ ++ Sbjct: 12 ARRIALEALSHCLFSGHDIQATLDTALSAKPTDPRDTGLATEIAYGYLRHKGRVEYVLSR 71 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 +L + L + + +A YE+ VP +++ A+E +K+ N VL Sbjct: 72 FLQDPGK-LPPKMRLAMGVAAYEMIFLDKVPAYASVDWAVEFSKTKPGTRLSGLFNAVLR 130 Query: 129 KAAP 132 + A Sbjct: 131 RVAE 134 >UniRef50_D0WFZ4 Transcription antitermination factor NusB n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WFZ4_9ACTN Length = 218 Score = 119 bits (299), Expect = 4e-26, Method: Composition-based stats. Identities = 40/142 (28%), Positives = 71/142 (50%), Gaps = 10/142 (7%) Query: 1 MKPAARRR---ARECAVQALYSWQLSQNDIADVEYQ--FLAEQDVKDVDVLYFRELLAGV 55 M A R+ R A LY ++ + + + E + + Y R LL G Sbjct: 1 MGKAKRQEHTFGRRSAASVLYQSEIIGKPVDRILEEGDIPEEAGLNE----YGRLLLLGF 56 Query: 56 ATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 + + A +D ++ + + + V++ +LRI +YE+ VP V+INEA+E+AK F Sbjct: 57 SAHRAEIDRIISERSANWAVNRMPMVDRELLRITVYEMKYVDAVPIPVSINEAVEIAKEF 116 Query: 115 GAEDSHKFVNGVLDKAAPVIRP 136 G +DS++F+NG+L + A + Sbjct: 117 GGDDSYRFINGLLGRVARDLDE 138 >UniRef50_Q47QY5 N utilization substance protein B homolog n=21 Tax=Actinomycetales RepID=NUSB_THEFY Length = 142 Score = 118 bits (298), Expect = 4e-26, Method: Composition-based stats. Identities = 38/136 (27%), Positives = 69/136 (50%), Gaps = 3/136 (2%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 + +R +AR AV+ LY ++ +++V + A+ + + +L V + A Sbjct: 6 RRGSRHKARVRAVEILYEAEVRGVPVSEVIERRRAQTE--PPINEFTEQLATRVDEHRAR 63 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D L++ Y L+ + V++ +LRI +YEL D+P VAI EA+ +AK ++S Sbjct: 64 IDELLETYAIGWTLDRMPVVDRNILRIGVYELLWADDIPDGVAIAEAVAMAKELSTDESP 123 Query: 121 KFVNGVLDKAAPVIRP 136 FVNG+L + Sbjct: 124 VFVNGLLSRLMEKKPS 139 >UniRef50_C5VC90 Transcription antitermination factor NusB n=2 Tax=Corynebacterium matruchotii RepID=C5VC90_9CORY Length = 312 Score = 118 bits (298), Expect = 4e-26, Method: Composition-based stats. Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 6/132 (4%) Query: 14 VQALYSWQLSQNDIADVEYQFLAEQDVK----DVDVLYFRELLAGVATNTAYLDGLMKPY 69 V LY + D + + V Y E++AGVA +D ++ Y Sbjct: 34 VDVLYEAEARDVDPVAIVEDRINLARVDITLVAPIAAYTSEIIAGVAEELNRIDDVIAEY 93 Query: 70 L--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 L + L + V++A+LR+A++E+ DVP K A++EA+ELA + + ++N VL Sbjct: 94 LAENWELSRISAVDRAILRVAVWEMIFNPDVPVKTALSEAVELASQYSGASAPAYINAVL 153 Query: 128 DKAAPVIRPNKK 139 D I ++ Sbjct: 154 DSVVKNIDDLRR 165 >UniRef50_D1KDZ6 Transcription termination factor n=1 Tax=uncultured SUP05 cluster bacterium RepID=D1KDZ6_9GAMM Length = 142 Score = 118 bits (298), Expect = 5e-26, Method: Composition-based stats. Identities = 53/136 (38%), Positives = 82/136 (60%), Gaps = 1/136 (0%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 ++R+RE VQA+Y + +S ++ +E QFL +++ + +F L + N L Sbjct: 4 KTPKQRSRERVVQAVYQYLVSGGEVLQIEQQFLNQKE-GKISKAFFSNLFINILKNRIEL 62 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 D L+ P +SR +ELG VE AVL + +YEL +VPYKV INEA+E+AK +GAE + K Sbjct: 63 DELIAPTISRETDELGSVEHAVLYLGVYELQNSIEVPYKVVINEALEIAKLYGAEGAFKL 122 Query: 123 VNGVLDKAAPVIRPNK 138 +N LD+ A +R + Sbjct: 123 INSSLDQLAKDLRELE 138 >UniRef50_C0AZZ3 Putative uncharacterized protein n=1 Tax=Proteus penneri ATCC 35198 RepID=C0AZZ3_9ENTR Length = 194 Score = 118 bits (298), Expect = 5e-26, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 56/133 (42%), Gaps = 5/133 (3%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK + R A +A+ ++ V + ++++ D D +E+ GV Sbjct: 1 MKTS--YNLRSIAAKAINQVLDQGLSLSTVIPEL--QKNISDKDKALLQEICFGVLRTLP 56 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 L+ +++ + + L+ ++ ++ + LY+L + +P A+ E + A + Sbjct: 57 QLEWIIQQLMDKPLKGKQRILHYLIMVGLYQLLY-TRIPAHAALAETVNGAVALKKPQLK 115 Query: 121 KFVNGVLDKAAPV 133 +NGVL + Sbjct: 116 GLINGVLRQFQRQ 128 >UniRef50_A0LUG6 N utilization substance protein B homolog n=2 Tax=Actinomycetales RepID=NUSB_ACIC1 Length = 145 Score = 118 bits (298), Expect = 5e-26, Method: Composition-based stats. Identities = 38/127 (29%), Positives = 65/127 (51%), Gaps = 3/127 (2%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 AR +AR+ A+ L+ L D ++ A Y L+ GVA + A +D Sbjct: 3 ARTKARKRALDVLFEADLRAADPLEILADHTARA--DTPVPEYAVRLVEGVAAHRAEIDR 60 Query: 65 LMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 +++ + L+ + V++ +LR+A+YEL ++VP V + EA++LA+ +S FV Sbjct: 61 IIEQFAVGWTLQRMPTVDRNILRLAIYELLWVTEVPDAVVLAEAVKLAQDLSTAESAPFV 120 Query: 124 NGVLDKA 130 NGVL Sbjct: 121 NGVLAAV 127 >UniRef50_C3XMJ2 Transcription termination protein n=1 Tax=Helicobacter winghamensis ATCC BAA-430 RepID=C3XMJ2_9HELI Length = 199 Score = 118 bits (297), Expect = 5e-26, Method: Composition-based stats. Identities = 41/131 (31%), Positives = 68/131 (51%), Gaps = 2/131 (1%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 A R AR Q LY++ + I+ + L+E +K+ + + L GV + +D Sbjct: 2 ATRTHARVAVAQLLYAYGSGNDGISKFVEEILSEHKIKNAQNEFAKTLFNGVLEHLEEVD 61 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 +K + E +G +E+A+LR+ YE+ S + + INEA+E+ K+F E S KF Sbjct: 62 LRIKHQIKNWDFERIGDMERAILRLGAYEIIF-SGMDKAIVINEALEITKNFSNETSTKF 120 Query: 123 VNGVLDKAAPV 133 +NG+LD A Sbjct: 121 INGILDGIAKN 131 >UniRef50_C8PUW0 NusB antitermination factor n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PUW0_9GAMM Length = 186 Score = 118 bits (297), Expect = 5e-26, Method: Composition-based stats. Identities = 47/132 (35%), Positives = 74/132 (56%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLM 66 R+AR VQ LY W L+ N ++E +E + V + Y+ ELL+ + + L + Sbjct: 29 RKARRFVVQGLYEWLLTGNPSHEIEAHTRSENAMHTVHLGYYHELLSKIIEQSDDLIAYI 88 Query: 67 KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGV 126 L+R L +VE+AVL + YE+ + +VPYKV I+EAI+L FG+ D +K ++ V Sbjct: 89 DSLLNRPWTRLDKVEQAVLLVGAYEMKQHLEVPYKVVIDEAIQLNTHFGSSDGYKMIHVV 148 Query: 127 LDKAAPVIRPNK 138 +DK A R + Sbjct: 149 MDKIAKDARMPE 160 >UniRef50_A7HX88 NusB antitermination factor n=1 Tax=Parvibaculum lavamentivorans DS-1 RepID=A7HX88_PARL1 Length = 171 Score = 118 bits (297), Expect = 5e-26, Method: Composition-based stats. Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 10/136 (7%) Query: 12 CAVQALYSWQLSQNDIADVEYQFLA--------EQDVKDVDVLYFRELLAGVATNTAYLD 63 AVQALY ++ + +V +F+ + ++ D ++F +++ GV LD Sbjct: 25 FAVQALYQMDIAATPLDEVVEEFVEHRLEEPEGDNEIFAADKVHFEDVVRGVVREQRELD 84 Query: 64 GLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 + L+ L L +A+LR YEL + DVP KV INE +E+A +F D Sbjct: 85 VQVNSALAKGWSLARLDATLRAILRCGTYELRRCKDVPLKVVINEYVEIAHAFFEGDEPG 144 Query: 122 FVNGVLDKAAPVIRPN 137 VN VLD+ IR Sbjct: 145 VVNAVLDRLGRDIRAG 160 >UniRef50_A6BZY6 Sun protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6BZY6_9PLAN Length = 477 Score = 118 bits (297), Expect = 5e-26, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 55/126 (43%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLM 66 R AR+ A L ++ + I+D Q+ D+ D E+ GV LD ++ Sbjct: 31 RSARQLAFFLLEEYRRTDQFISDSMQQWERRIDLSSADWRLAMEISIGVVRRQLTLDTII 90 Query: 67 KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGV 126 + L+R E++ +L+I Y+L +P A++E +ELA K VN + Sbjct: 91 ESQLTRPREKVEAPLWTLLQIGAYQLVMLDQIPDHAAVSETVELAGKLQRVRWKKMVNAI 150 Query: 127 LDKAAP 132 L + Sbjct: 151 LRSISR 156 >UniRef50_D0LW51 NusB antitermination factor n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LW51_HALO1 Length = 150 Score = 118 bits (297), Expect = 6e-26, Method: Composition-based stats. Identities = 46/141 (32%), Positives = 74/141 (52%), Gaps = 4/141 (2%) Query: 1 MKPAARRRARECAVQALYSWQLSQ-NDIADVEYQFLAEQDV--KDVDVLYFRELLAGVAT 57 MK ARRRAR A+Q LY+ L+ + ++ D+ + + R L+ V Sbjct: 1 MKVGARRRARSYALQVLYALDLNPLEEPTRALLEYAGRFDLRIDEEAGDFARSLIEQVYP 60 Query: 58 NTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 + +D ++ +E + +V++ VLR+A+ ELS+ +V INEA+ELAK FG Sbjct: 61 HLERIDERIQTASRNWRIERMSRVDRNVLRLAVGELSQPDGAAARVVINEAVELAKRFGT 120 Query: 117 EDSHKFVNGVLDKAAPVIRPN 137 +S FVNG+LD+ R + Sbjct: 121 TESPAFVNGILDRVDQHKRDD 141 >UniRef50_D1N6Z8 NusB antitermination factor n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N6Z8_9BACT Length = 170 Score = 118 bits (296), Expect = 6e-26, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 15/153 (9%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADV----------EYQFLAEQDVKDVDVLYFREL 51 KP A+R RE A+Q L+ + + E L E + Y ++L Sbjct: 13 KPHAKRLGRELAMQYLFRCDMRDELPSAATFGQFFEEVREQHALQENRLARKGREYAQQL 72 Query: 52 LAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIEL 110 VA + +D ++ + L V++ ++RIA+ E+ +VP V+I+EA+E+ Sbjct: 73 YNNVAVHKEEIDATIQARSENWEWDRLSVVDRNIMRIAVAEMLYEEEVPPVVSIDEAVEI 132 Query: 111 AKSFGAEDSHKFVNGVL----DKAAPVIRPNKK 139 A+ + E + F+NGVL D R +K+ Sbjct: 133 ARDYSGEAAGNFINGVLNGVKDTLKRSPRGDKR 165 >UniRef50_Q1NQ57 Fmu, rRNA SAM-dependent methyltransferase n=2 Tax=delta proteobacterium MLMS-1 RepID=Q1NQ57_9DELT Length = 487 Score = 118 bits (296), Expect = 7e-26, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 58/141 (41%), Gaps = 4/141 (2%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDV-KDVDVLYFRELLAGVATNT 59 M P A R+ A+Q L + + S + + L E + D L+ GV Sbjct: 1 MTPTA--NIRQVALQLLLAQEQSGQPVEQLLEHQLREHPLADGRDRRLLEALVYGVLRWR 58 Query: 60 AYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE-D 118 LD ++ Y L ++ + A LR+ + +L +P AINE I+ ++ Sbjct: 59 GLLDQVVAGYARHPLAKMKPLTLAALRLGILQLLILERLPASAAINETIKALRAARQPRW 118 Query: 119 SHKFVNGVLDKAAPVIRPNKK 139 FVN VL KAA I + Sbjct: 119 LTGFVNAVLRKAAADIERLGR 139 >UniRef50_Q836W8 N utilization substance protein B homolog n=39 Tax=Lactobacillales RepID=NUSB_ENTFA Length = 154 Score = 118 bits (296), Expect = 7e-26, Method: Composition-based stats. Identities = 46/143 (32%), Positives = 73/143 (51%), Gaps = 10/143 (6%) Query: 5 ARRRARECAVQALYSWQLS-QNDIADVEYQFLAE-------QDVKDVDVLYFRELLAGVA 56 R RE A+QAL+ + D LA +D +D+ Y L+ GV Sbjct: 11 TRHEIREKALQALFPLDFNADLTKQDAIDYALAYDNREIVSEDGEDLVPTYLDLLVGGVC 70 Query: 57 TNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 + A LD ++ +L + ++ L +++ +LR+A++E+ SDVP VA+NEA+EL+K + Sbjct: 71 SRKAELDEVITNHLGNNWSMQRLAKIDIVILRLAIFEMLYVSDVPNIVALNEAVELSKKY 130 Query: 115 GAEDSHKFVNGVLDKAAPVIRPN 137 + S KFVNGVL I Sbjct: 131 SDDRSRKFVNGVLSNVMKEIDSE 153 >UniRef50_C0W3L2 rRNA (Cytosine-C(5)-)-methyltransferase n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W3L2_9ACTO Length = 527 Score = 118 bits (296), Expect = 8e-26, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 50/132 (37%), Gaps = 1/132 (0%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 +P+ AR +++AL + V L + D + L G Sbjct: 58 RPSTVDAARLVSLEALTKVRQDGGFANLVLPPMLDAARLDRRDAGFATALTYGTLRLQGR 117 Query: 62 LDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D ++ + R L++L V VLR+ ++L V A++ ++LA + Sbjct: 118 YDAIIAQCVDRRLDQLDGVVLDVLRLGTHQLLGM-RVATHAAVSATVDLASHAAGRGAAG 176 Query: 122 FVNGVLDKAAPV 133 VN VL + + Sbjct: 177 LVNAVLRRISQK 188 >UniRef50_B9K874 Sun protein n=6 Tax=Thermotogaceae RepID=B9K874_THENN Length = 431 Score = 117 bits (295), Expect = 8e-26, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 7/125 (5%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R R A + L ++ + + L+ + D D + +EL+ GV LD Sbjct: 2 RTNVRLLAYRLLRKYEKEKFLDREDVDSVLSV--LNDRDRRFLKELVWGVMRKEELLDWY 59 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 + L ++ + LR+ +Y+L VP A++E ++L K E+ K VN Sbjct: 60 INQLLRNP--DIPPAVRVALRMGVYQLLFMDGVPDYAAVSETVKLVK---NENFKKLVNA 114 Query: 126 VLDKA 130 VL + Sbjct: 115 VLRRV 119 >UniRef50_B0VHI6 Putative 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VHI6_9BACT Length = 438 Score = 117 bits (295), Expect = 9e-26, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 49/127 (38%), Gaps = 1/127 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R A + + + +Q + D F L+ GV LD +++ Y Sbjct: 4 RSEAYTTILKVLKDKEYSDTLLHQRAKKLKNAGEDPALFYNLVKGVIKLYLKLDYILQQY 63 Query: 70 L-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 + + + K +L + LY+L + +P A+NE +ELAK+ FVN VL Sbjct: 64 VDKKKYTDTDIKIKVLLYMGLYQLLYLNSIPDYAAVNETVELAKTLFNPQVADFVNAVLR 123 Query: 129 KAAPVIR 135 Sbjct: 124 NYLRNPE 130 >UniRef50_C2GHU0 16S rRNA M(5)C 967 methyltransferase n=1 Tax=Corynebacterium glucuronolyticum ATCC 51866 RepID=C2GHU0_9CORY Length = 620 Score = 117 bits (295), Expect = 9e-26, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 45/124 (36%), Gaps = 5/124 (4%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R + AL + + + E + D + E+ G LD ++ Sbjct: 141 RLITLSALGAVFNDGAYGNIALPREITEAGLSGRDAAFATEIGYGTMRMVGVLDEIIGSC 200 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 SR + EL + LR+ +Y+L + V A++ ++ L + FVN +L Sbjct: 201 SSRPMSELDPIVLNALRMGIYQLLY-TRVEDHAAVDTSVRLV----PQRVKGFVNAILRA 255 Query: 130 AAPV 133 Sbjct: 256 VQKK 259 >UniRef50_C8R080 Sun protein n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R080_9DELT Length = 501 Score = 117 bits (295), Expect = 1e-25, Method: Composition-based stats. Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 2/126 (1%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQ-DVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 R+ A++ L + + V ++ A + D R L+ V +LD ++ Sbjct: 19 RQVALEILLQQEQQNRPLDQVLAEYPARRWPSDRRDRQLVRALVYEVLRRRGFLDHVVAR 78 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE-DSHKFVNGVL 127 Y L ++ + A LR+ L +L +P AI+E I K+ FVNG+L Sbjct: 79 YAKHPLAKMKPLTLAALRLGLAQLLYFDRLPPAAAIDETIRALKAARQPRWITGFVNGLL 138 Query: 128 DKAAPV 133 AA Sbjct: 139 RNAARE 144 >UniRef50_Q0F2C5 Transcription antitermination protein NusB n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F2C5_9PROT Length = 145 Score = 117 bits (294), Expect = 1e-25, Method: Composition-based stats. Identities = 50/139 (35%), Positives = 80/139 (57%), Gaps = 4/139 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDI---ADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 A R +ARE ++ LY+W +Q D ++ L ++ D D Y RE + G+ +T Sbjct: 2 ANRHQARESVLETLYAWSSAQQDSGMIPELLASRLQHEERADQDESYLREAVYGITDHTD 61 Query: 61 YLDGLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 LD L+K + R L + Q+E V+R+A++E+ R ++PY+V INEA+EL + + E Sbjct: 62 ALDELIKTAVRGRSLRSVAQIEINVIRLAVWEMQNRLEIPYRVIINEALELTRDYAGEPP 121 Query: 120 HKFVNGVLDKAAPVIRPNK 138 F+NGVLD A +RP + Sbjct: 122 RGFINGVLDNLAKQLRPAE 140 >UniRef50_B2VK95 Ribosomal RNA small subunit methyltransferase B n=3 Tax=Erwinia RepID=RSMB_ERWT9 Length = 429 Score = 117 bits (294), Expect = 1e-25, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 52/136 (38%), Gaps = 5/136 (3%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK R A Q + +++V ++ V D D +EL GV Sbjct: 1 MKKMT--NLRCIAAQTIEKVVEQGQSLSNVLPAA--QKSVGDKDAALLQELCYGVLRTLP 56 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 L+ ++ +SR + + ++ + LY+L + +P A+ E +E A + Sbjct: 57 QLEWVIGRLMSRPMTGKQRAVHFLIMVGLYQLMF-TRIPAHAALAETVEGAVALKRPQLK 115 Query: 121 KFVNGVLDKAAPVIRP 136 +NGVL + Sbjct: 116 GLINGVLRQFQRQQDE 131 >UniRef50_Q317Q8 Sun protein n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q317Q8_DESDG Length = 444 Score = 117 bits (294), Expect = 1e-25, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 51/140 (36%), Gaps = 9/140 (6%) Query: 1 MKPAARRR--------ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELL 52 MK + RR AR A++ L + + V +L + + D EL+ Sbjct: 1 MKKQSPRRGGVATLPPARGAALEILRDVLDKKREAQSVLDSYLKDNRLSPQDAALCTELV 60 Query: 53 AGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAK 112 G + + L++ +L L + I++YE+ VP +++ A+ + Sbjct: 61 YGYLRSEIRISWLIRRFLK-PDSRLPAELLLTMGISVYEILYLQRVPVYASVDWAVSYVR 119 Query: 113 SFGAEDSHKFVNGVLDKAAP 132 S + N VL Sbjct: 120 SRFGTGLSRLANAVLRSIDR 139 >UniRef50_Q12TA7 Sun protein n=8 Tax=Gammaproteobacteria RepID=Q12TA7_SHEDO Length = 428 Score = 117 bits (293), Expect = 1e-25, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 44/127 (34%), Gaps = 2/127 (1%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R A +A++ ++ D EL GV LD + Sbjct: 5 RALAAKAIFDVLEKGLSLSVALPLQQQHVQ-NGKDKALLAELCYGVMRQLPQLDKCVSDC 63 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 L++ + ++ +L + Y+L + +P A++E E + + K VNGVL Sbjct: 64 LAKPFKGKQRILHQLLLVGCYQL-YFTRIPSHAAVSETAEACRQLKFDGLVKVVNGVLRN 122 Query: 130 AAPVIRP 136 Sbjct: 123 IQRQEPE 129 >UniRef50_B0CL95 N utilization substance protein B homolog n=42 Tax=Alphaproteobacteria RepID=NUSB_BRUSI Length = 171 Score = 117 bits (293), Expect = 1e-25, Method: Composition-based stats. Identities = 47/146 (32%), Positives = 71/146 (48%), Gaps = 10/146 (6%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQF--------LAEQDVKDVDVLYFRELLAGV 55 R AR A QALY ++ + +V ++ + D D +FR ++AGV Sbjct: 18 NKRGVARLAAAQALYQMDVAGTGVMEVVAEYEAFRLGKEVDGTQYLDADPQWFRAIVAGV 77 Query: 56 ATNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKS 113 + LD ++ L L L +A+LR +EL R DVP V ++E +++AK+ Sbjct: 78 VEDQLKLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELKARKDVPTAVIVSEYVDIAKA 137 Query: 114 FGAEDSHKFVNGVLDKAAPVIRPNKK 139 F ED K VN VLD+ A VIR + Sbjct: 138 FYTEDEPKLVNAVLDRLALVIRGESR 163 >UniRef50_Q03FZ6 N utilization substance protein B homolog n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=NUSB_PEDPA Length = 133 Score = 117 bits (293), Expect = 1e-25, Method: Composition-based stats. Identities = 38/131 (29%), Positives = 72/131 (54%), Gaps = 4/131 (3%) Query: 5 ARRRARECAVQALYSWQLS-QNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 R + RE A + +++ + D+++++ Q L E + + ++L+ GV+ N ++ Sbjct: 4 NRHQIRESAFKIIFAKSANPDADLSELQDQVLEEFHETEAPDQFLKDLVMGVSLNLEAIN 63 Query: 64 GLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 + L ++ L ++ +L++ YE+ ++ P KVAINEA+ELAK + ED+ K Sbjct: 64 ETISGELKKGWTVKRLESPDRVILQMGTYEIKY-TETPDKVAINEALELAKKYTDEDARK 122 Query: 122 FVNGVLDKAAP 132 F+NGVL A Sbjct: 123 FINGVLSNIAK 133 >UniRef50_D2EIA0 Transcription antitermination factor NusB n=1 Tax=Pediococcus acidilactici 7_4 RepID=D2EIA0_PEDAC Length = 134 Score = 117 bits (293), Expect = 2e-25, Method: Composition-based stats. Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 4/132 (3%) Query: 5 ARRRARECAVQALYSWQLS-QNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 R + RE A + +++ ++ D +++ Q L E DV + L+ GV N + ++ Sbjct: 4 NRHQMRESAFKMIFAQSVNPDADPEELKKQVLEEFHETDVADPFLDNLVTGVQENVSSIN 63 Query: 64 GLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 + L + L ++ +L+I YE+ ++VP VAINEA+ELAK + E + K Sbjct: 64 ETIGKELKAGWTVNRLANPDRVILQIGTYEIKH-TEVPNNVAINEALELAKKYTDEKARK 122 Query: 122 FVNGVLDKAAPV 133 F+NGVL A Sbjct: 123 FINGVLSNVAKD 134 >UniRef50_Q38XV0 N utilization substance protein B homolog n=9 Tax=Lactobacillus RepID=NUSB_LACSS Length = 142 Score = 117 bits (293), Expect = 2e-25, Method: Composition-based stats. Identities = 45/141 (31%), Positives = 70/141 (49%), Gaps = 9/141 (6%) Query: 1 MKPAARRRARECAVQALYSWQLSQN-DIADVEYQFLAEQDVKDVDV------LYFRELLA 53 M R + R+ A Q L++ +Q+ ++ D L +V Y L++ Sbjct: 1 MPNFNRHQIRQAAFQVLFTLNANQSLELEDAYQAVLTMDQFDAEEVTPVEVPAYLAFLVS 60 Query: 54 GVATNTAYLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELA 111 GV N A LD + PYL L L + + +LR+ L+E+ ++ P KVA+NEA+ELA Sbjct: 61 GVTENQAALDAALTPYLKKGWQLSRLAKPDLIILRLGLFEMQNSTEAPAKVALNEALELA 120 Query: 112 KSFGAEDSHKFVNGVLDKAAP 132 K F + + F+NGVL K Sbjct: 121 KQFTDDQAKGFINGVLSKFVE 141 >UniRef50_Q5HW85 N utilization substance protein B homolog n=24 Tax=Epsilonproteobacteria RepID=NUSB_CAMJR Length = 132 Score = 116 bits (292), Expect = 2e-25, Method: Composition-based stats. Identities = 42/133 (31%), Positives = 70/133 (52%), Gaps = 3/133 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 A R + R+ + LY+++L+ + + L E+ +++ + L G+ N +D Sbjct: 2 ATRHQVRQSVISLLYAFELNSQN-NVFVDEILDEKKIRNEQKNFTLNLYNGILDNLNNID 60 Query: 64 GLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + +L + LG VE+A+LR+ YEL +D P + INEAIELAK ++S KF Sbjct: 61 ETLNSFLNDNQITALGHVERAILRLGAYELLF-TDTPSAIVINEAIELAKELANDNSPKF 119 Query: 123 VNGVLDKAAPVIR 135 +NGVLD + Sbjct: 120 INGVLDALIKAKK 132 >UniRef50_B0SB76 N utilization substance protein B homolog n=6 Tax=Leptospira RepID=NUSB_LEPBA Length = 140 Score = 116 bits (292), Expect = 2e-25, Method: Composition-based stats. Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 1/131 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 ++R R R A+ LY L D ++ + + Y L+ GV N +D Sbjct: 2 SSRHRGRSLALMCLYQIDLVGTDPDRAMKFDWYDKKITREEKDYAVFLVKGVVENRKAID 61 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 L+K Y L + V + +LR+++ L K + V INEA+EL K F E+S +F Sbjct: 62 TLIKKYSENWELSRISVVNRCILRLSILSLQKEPFLAAPVVINEAVELTKEFETEESAQF 121 Query: 123 VNGVLDKAAPV 133 +NG+LD Sbjct: 122 INGLLDAFYKK 132 >UniRef50_B1ZVQ6 NusB antitermination factor n=3 Tax=Verrucomicrobia RepID=B1ZVQ6_OPITP Length = 147 Score = 116 bits (291), Expect = 3e-25, Method: Composition-based stats. Identities = 39/141 (27%), Positives = 74/141 (52%), Gaps = 6/141 (4%) Query: 4 AARRRARECAVQALYSWQLS-QNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 A RR R A+Q L++W ++ ++A+ F + + EL+ GV ++ + Sbjct: 7 AQRRDGRVAALQYLFAWSMNRPRNLAEDLRVFFENMEQPRDHYAFGEELIHGVIEHSDDI 66 Query: 63 DGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D +K + + +++ +LR+A++E+ R D+P V+INEAI+L+K F D+ + Sbjct: 67 DARIKGLAHNWEFDRIAKIDLTILRLAIFEILHRKDIPPVVSINEAIDLSKQFSNADAKR 126 Query: 122 FVNGVLDK----AAPVIRPNK 138 F+NG+LD+ R + Sbjct: 127 FINGILDRLKDQVGRDARKAE 147 >UniRef50_C4DFR3 Transcription antitermination factor NusB n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DFR3_9ACTO Length = 147 Score = 116 bits (291), Expect = 3e-25, Method: Composition-based stats. Identities = 44/133 (33%), Positives = 64/133 (48%), Gaps = 5/133 (3%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDV---DVLYFRELLAGVATNTAY 61 ARR+AR+ AV LY + I V Y EL+ GVA Sbjct: 11 ARRKARKRAVDVLYEAEQRDEPIRRVLEDRRKLAVTDPQMPGIPEYTFELVDGVAEYLDE 70 Query: 62 LDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D ++ L L+ + V++ +LR+A +EL R DV VAI+EA+++A+ EDS Sbjct: 71 VDDVIARCLHSGWYLDRIAAVDRNILRVAAFELRYREDVDAAVAISEAVKIAEVLCGEDS 130 Query: 120 HKFVNGVLDKAAP 132 FVNGVL + Sbjct: 131 PAFVNGVLQSVSE 143 >UniRef50_B9CP02 Transcription antitermination factor NusB n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CP02_9ACTN Length = 161 Score = 116 bits (291), Expect = 3e-25, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 68/139 (48%), Gaps = 7/139 (5%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVE--YQFLAEQDVKDVDVLYFRELLAGVATNT 59 K R AR A+Q L+ + + + +V L+E + Y +L G Sbjct: 4 KFFGRTLARSQALQLLFQAEQTNRTVEEVLQGEYVLSEGPLDP----YAEKLACGTDGIR 59 Query: 60 AYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 LD ++ Y + + V++ +L+++LYE+ + S+V + INE IEL+ ++ ++ Sbjct: 60 DDLDMILNAYSHGWSVSRMPSVDRNLLQLSLYEMLEVSEVDVSITINEVIELSHAYCGDE 119 Query: 119 SHKFVNGVLDKAAPVIRPN 137 S +F+NG+L + A I Sbjct: 120 SPRFINGILGRVAADIAEG 138 >UniRef50_B0VJ63 N utilization substance protein B n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VJ63_9BACT Length = 153 Score = 116 bits (291), Expect = 3e-25, Method: Composition-based stats. Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 15/150 (10%) Query: 4 AARRRARECAVQALYSWQLS------------QNDIADVE-YQFLAEQDVKDVDVLYFRE 50 RR+ARE AVQ LYS + S + + E Sbjct: 2 GQRRKAREMAVQCLYSLEFSEVEKDYREYGLLNEYPDILLSLAEAEHIQPNSPVYAFADE 61 Query: 51 LLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIE 109 L+ N ++ + LE++ +++++L +A YEL +D P V INEAIE Sbjct: 62 LVKNTIINIEQVESEIDKLSDNWELEDIALLDRSILCLAAYELLF-TDTPAPVVINEAIE 120 Query: 110 LAKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 +AK F +E S KF+NG+LD I K Sbjct: 121 IAKKFSSEASGKFINGILDALNKEIIQKGK 150 >UniRef50_UPI00019779AE transcription antitermination protein NusB n=1 Tax=Helicobacter cinaedi CCUG 18818 RepID=UPI00019779AE Length = 165 Score = 115 bits (290), Expect = 3e-25, Method: Composition-based stats. Identities = 52/134 (38%), Positives = 72/134 (53%), Gaps = 3/134 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 A R +ARE + LY++ L DI D+ E+ +K+ + LL G TN +D Sbjct: 2 ATRTQAREAVIGMLYAYDLGNKDILDIARSMFEEKKIKNKQQDFAFLLLQGAITNLQSID 61 Query: 64 GLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED-SHK 121 + PYL LG +EKAVLR+ YE+ +D V INEAIEL K +G ED + + Sbjct: 62 EAIIPYLKEWDFSRLGGMEKAVLRLGAYEILY-TDTDSPVVINEAIELGKMYGGEDNTPR 120 Query: 122 FVNGVLDKAAPVIR 135 F+NGVLD + R Sbjct: 121 FLNGVLDALSKAHR 134 >UniRef50_UPI0001BC2C1E Fmu (Sun) domain protein n=1 Tax=Brevibacterium linens BL2 RepID=UPI0001BC2C1E Length = 492 Score = 115 bits (290), Expect = 3e-25, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 58/148 (39%), Gaps = 14/148 (9%) Query: 2 KPAARRRA------------RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFR 49 K A RR+ R A + L + + + LA ++ D + Sbjct: 30 KSAPRRQQTEREPRQAKNLPRRIAWEVLVDVETKDSYANLLLPAKLARTHMEPQDAAFTT 89 Query: 50 ELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIE 109 EL G + D ++ +R ++ + A +R+ +++ VP A++E + Sbjct: 90 ELTYGALRQQEFYDAIIARAANRPIDSIDAEPLAGMRLGAHQILSM-RVPDHAALSETVA 148 Query: 110 LAKSFGAEDSHKFVNGVLDKAAPVIRPN 137 + K+ A + FVN VL + + V R Sbjct: 149 VIKT-NAPKTAGFVNAVLRRISEVDRAE 175 >UniRef50_Q6A8H0 TRNA/rRNA cytosine-C5-methylase n=3 Tax=Propionibacterium acnes RepID=Q6A8H0_PROAC Length = 458 Score = 115 bits (290), Expect = 4e-25, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 4/130 (3%) Query: 5 ARRRA---RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 RR+A R A AL + + L + D + EL+ G + T Sbjct: 8 KRRKADPARRLAYSALLAVETHGAYANLALADHLRAAKLTGRDAAFATELVDGTSRGTGT 67 Query: 62 LDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D +++ R +L + VLR+A +++ VP + A+ +++LA E Sbjct: 68 WDRIIEAASCRAPAKLQPGVRVVLRMAAHQILAM-RVPTRAAVASSVDLAGQVIGERVTG 126 Query: 122 FVNGVLDKAA 131 VN + + + Sbjct: 127 LVNAISRRIS 136 >UniRef50_A5ZPE1 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=A5ZPE1_9FIRM Length = 180 Score = 115 bits (290), Expect = 4e-25, Method: Composition-based stats. Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 3/139 (2%) Query: 4 AARRRARECAVQALYSWQLSQND--IADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 R RE + L+ Q + + V F ++++ D + + + Sbjct: 1 MRRSEQREHIFKLLFMTQFNSENEMSDQVSMYFDTLGELEEKDQEAIQNKYQHILEHLDE 60 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D ++ Y + +V+ LR+A+YE+ +VP VAINEA+ELAK FG EDS Sbjct: 61 IDQILNEYSRGWKTTRMNRVDLTALRLAVYEMKMDEEVPVGVAINEAVELAKLFGGEDSG 120 Query: 121 KFVNGVLDKAAPVIRPNKK 139 FVNG+L K A + + + Sbjct: 121 SFVNGILGKIASGKKDSGE 139 >UniRef50_Q2WB24 tRNA and rRNA cytosine-C5-methylase n=3 Tax=Alphaproteobacteria RepID=Q2WB24_MAGSA Length = 431 Score = 115 bits (289), Expect = 4e-25, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 50/135 (37%), Gaps = 2/135 (1%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK A+ R AV L + DV ++D D + R LL Sbjct: 1 MKRASSTSPRAIAVDLLSMVLDKGRLLDDVLDDS-RLSRLEDRDRGFVRMLLGTTLRRLG 59 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D L++ L + + + LR+ + +L DV AI+ ++L K Sbjct: 60 QIDTLIEHCLDKPMRAGAAGAEHALRLGICQLLFL-DVAPHAAISTTVDLVKGSKLAGFA 118 Query: 121 KFVNGVLDKAAPVIR 135 K +N VL + R Sbjct: 119 KLLNAVLRRLDREGR 133 >UniRef50_C5RAE2 RNA methyltransferase n=3 Tax=Lactobacillales RepID=C5RAE2_WEIPA Length = 456 Score = 115 bits (289), Expect = 5e-25, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 58/128 (45%), Gaps = 2/128 (1%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R +V+ L Q + + + D+ + +V ++ GV + L+ + P+ Sbjct: 18 RALSVRVLEKVQ-NGAYSNLQLDSMIKQADLSEKNVHLMTTMVYGVIQHRLTLEYWLIPF 76 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 + + ++L + +L I+++++ +P +EAI +AK G + + KFV GVL Sbjct: 77 IKQP-QKLESWVRELLYISIFQMQYLDKIPDHAIFDEAINIAKRRGHDGTRKFVTGVLHA 135 Query: 130 AAPVIRPN 137 P+ Sbjct: 136 IQRQGLPD 143 >UniRef50_Q1JF82 N utilization substance protein B homolog n=57 Tax=Streptococcus RepID=NUSB_STRPD Length = 150 Score = 115 bits (289), Expect = 5e-25, Method: Composition-based stats. Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 9/144 (6%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVL------YFRELLAGVAT 57 +RR RE A QAL++ ++ ++ V D + L+ GV Sbjct: 7 NSRRDLRERAFQALFNIEM-GAELLAASQFAYGYDKVTREDAQVLELPIFLLSLVTGVNN 65 Query: 58 NTAYLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG 115 + LD L+ +L LE L +K +LR+ L+E+ + P +VA+NE IE+AK + Sbjct: 66 HKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEVAKKYS 125 Query: 116 AEDSHKFVNGVLDKAAPVIRPNKK 139 E S KF+NG+L + K Sbjct: 126 DETSAKFINGLLSQYVSEAPSANK 149 >UniRef50_C6XRR6 Fmu (Sun) domain protein n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XRR6_HIRBI Length = 487 Score = 115 bits (289), Expect = 5e-25, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 51/132 (38%), Gaps = 2/132 (1%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 ++R A L D+ + +++ D + R + + +D ++ Sbjct: 62 QSRRAAADILMRIVHEGADMDEALASSKFFDELEGPDRGFARAIASAALRAFGRIDDALE 121 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG-AEDSHKFVNGV 126 YL R LE++ ++LR+ +L P A++ +E A+ + A VN + Sbjct: 122 TYLDRPLEKIDPAVLSLLRVGCAQL-WVLKAPSYAAVDATVEAARQWKPASRGGGMVNAI 180 Query: 127 LDKAAPVIRPNK 138 L +A + Sbjct: 181 LRRAGREPEAYE 192 >UniRef50_C5WIG1 16S rRNA m(5)C 967 methyltransferase n=44 Tax=Streptococcaceae RepID=C5WIG1_STRDG Length = 452 Score = 115 bits (288), Expect = 6e-25, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 2/123 (1%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 R A+ L Q L+ + + D E++ G + L+ + Sbjct: 21 IRGKALLTLEHIFDQGAYTNIALNQQLSNKALSTKDRALLTEIVYGTVSRKISLEWYLAH 80 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH-KFVNGVL 127 Y+ ++L + +L ++LY+L +P +N+A+ +AK+ G + KFVN +L Sbjct: 81 YVKDR-DKLDKWVYYLLMLSLYQLIYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVNAIL 139 Query: 128 DKA 130 + Sbjct: 140 RQF 142 >UniRef50_C1F543 Putative ribosomal RNA small subunit methyltransferase B n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F543_ACIC5 Length = 440 Score = 115 bits (288), Expect = 6e-25, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 1/122 (0%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR A L S ++ + + D L+ G LD ++ Sbjct: 5 ARRVAFDLLQRMATSDAHSDELLR-TMKVNALAAQDRNLVTTLVLGTLRWQPALDQILLQ 63 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 +L+R + L + +A LR+ ++L VP +N+++EL K + VN VL Sbjct: 64 FLTRPDQRLSEPVRAALRLGAFQLLHLDRVPPHAVLNDSVELVKLSNEAYATGLVNAVLR 123 Query: 129 KA 130 K Sbjct: 124 KV 125 >UniRef50_Q6A8H8 N utilization substance protein B homolog n=2 Tax=Propionibacterium acnes RepID=NUSB_PROAC Length = 261 Score = 115 bits (288), Expect = 6e-25, Method: Composition-based stats. Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 5/130 (3%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 + R +AR+ A+ L+ L D +V + + +L+ GVA LD Sbjct: 37 STRSKARKQALDILFEADLIGTDPLEVLAA--RPGVFTNPVRPFAADLVRGVAATQVGLD 94 Query: 64 GLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 ++ LS L + +V++ + R+ +E+ +D P I+EAIEL++ F +DS Sbjct: 95 SVLTDCLSEGWTLARMPRVDRILARLGAFEILH-TDTPNPAVISEAIELSEEFSTDDSAP 153 Query: 122 FVNGVLDKAA 131 F+NG+L Sbjct: 154 FLNGLLGAVI 163 >UniRef50_Q0APG4 N utilization substance protein B homolog n=3 Tax=Alphaproteobacteria RepID=NUSB_MARMM Length = 160 Score = 115 bits (288), Expect = 6e-25, Method: Composition-based stats. Identities = 44/136 (32%), Positives = 65/136 (47%), Gaps = 10/136 (7%) Query: 13 AVQALYSWQLSQNDIADVEYQFLAE--------QDVKDVDVLYFRELLAGVATNTAYLDG 64 AVQALY ++ + V +F + + D +F L+AGV A +D Sbjct: 24 AVQALYQMEIGGLGASAVIREFREHRFGACGEAPEFVEADEDFFESLVAGVVERQADVDP 83 Query: 65 LMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 M L LE L +A+LR+ +EL R DVP +V I+E IE+A +F KF Sbjct: 84 AMDALLADKWRLERLDATVRAILRVGGFELLYRKDVPARVVIDEYIEVANAFFEGAEPKF 143 Query: 123 VNGVLDKAAPVIRPNK 138 +N D+ A RP++ Sbjct: 144 INAAFDRCARGARPDE 159 >UniRef50_B6IMS4 Transcription antitermination protein NusB, putative n=1 Tax=Rhodospirillum centenum SW RepID=B6IMS4_RHOCS Length = 179 Score = 114 bits (287), Expect = 8e-25, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 10/135 (7%) Query: 14 VQALYSWQLSQNDIADVEYQFLAEQ--------DVKDVDVLYFRELLAGVATNTAYLDGL 65 VQALY +L +F+ + D F +++ GV A +D L Sbjct: 37 VQALYQIELGGTPSETAIGEFVRHRLGQEIDGDRYVSADPQLFADIVRGVMARQADVDQL 96 Query: 66 MKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 + L L+ + + +A+LR +EL + V + IN+ I++ +F A V Sbjct: 97 VTGVLDRQWGLDRMEPILRAILRAGAWELLGNTGVAPHIVINDYIDVGHAFFAGREPGMV 156 Query: 124 NGVLDKAAPVIRPNK 138 NGVLD+ A +RP + Sbjct: 157 NGVLDRIARQLRPEE 171 >UniRef50_Q6NH08 N utilization substance protein B homolog n=1 Tax=Corynebacterium diphtheriae RepID=NUSB_CORDI Length = 182 Score = 114 bits (287), Expect = 8e-25, Method: Composition-based stats. Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 6/141 (4%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDV----LYFRELLAGVAT 57 + +R +AR AV L+ ++ D + + + DV Y +E+++G A Sbjct: 12 RRGSRYKARRRAVDILFEAEMRDIDPVAIVEDRVVLSRLNGTDVNQVPSYTKEIVSGAAM 71 Query: 58 NTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG 115 LD L+ +L LE + V++A+LR++++EL DVP AI E +ELA + Sbjct: 72 ELDRLDELIAAHLAEDWSLERIMTVDRAILRVSVWELIFNPDVPLATAIIEGVELASEYS 131 Query: 116 AEDSHKFVNGVLDKAAPVIRP 136 + S +V+ +LD A I Sbjct: 132 TDVSPAYVHALLDSIAKNIDE 152 >UniRef50_C1XPK4 NusB antitermination factor n=2 Tax=Meiothermus RepID=C1XPK4_9DEIN Length = 156 Score = 114 bits (287), Expect = 8e-25, Method: Composition-based stats. Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 16/148 (10%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLA--------------EQDVKDVDVLYFREL 51 RR+ARE A + L+ + + + + + + + R L Sbjct: 2 RRKARELAFKVLFEHAVGGVSLEEAWEHVSQNHDPEEASSERDSYDDPLDQGGLEFARRL 61 Query: 52 LAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIEL 110 L G + + +D ++ + ++ + + AVLR+A YE+ PY I A+++ Sbjct: 62 LEGYQRHESEIDEVLGNTIQGWSFGQMAKTDLAVLRLAAYEMLYEP-TPYAPLIEVAVKI 120 Query: 111 AKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 AK +G EDS +FVNGVL + I + Sbjct: 121 AKRYGGEDSGRFVNGVLGRLLKRIENAE 148 >UniRef50_Q1DCG5 Ribosomal RNA small subunit methyltransferase B n=2 Tax=Cystobacterineae RepID=Q1DCG5_MYXXD Length = 438 Score = 114 bits (286), Expect = 9e-25, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 49/123 (39%), Gaps = 2/123 (1%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAE-QDVKDVDVLYFRELLAGVATNTAYLDGLM 66 AR A+Q L + + + V L+E D EL G LD + Sbjct: 2 NARALAIQVLARVRATDAYLNVVLDTQLSESPPKDPRDAALVTELTYGATRRQLALDYAI 61 Query: 67 KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGV 126 + R L+ L A LRI Y++ + VP + A+ E ++ K G + F N + Sbjct: 62 TRFADRKLDALEDKVLAALRIGAYQI-FHTRVPARAAVAETVQALKEVGLTRAAGFTNAI 120 Query: 127 LDK 129 L K Sbjct: 121 LRK 123 >UniRef50_A8G3E0 Sun protein (Fmu protein) n=7 Tax=Prochlorococcus marinus RepID=A8G3E0_PROM2 Length = 438 Score = 114 bits (286), Expect = 1e-24, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 1/126 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R+ A + L S + + L +D+ + EL G +LD Sbjct: 8 RKAAWEILLKV-SSGDFSDHALEKVLKNYQFNSLDIAFITELSFGCIRYRKFLDLWTDHT 66 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 ++ + +L I LY+L K +P+ AI+ +E+AK VN +L Sbjct: 67 SKITHKKQPPKLRWLLHIGLYQLLKMDKIPFPAAISTTVEVAKKTDLNGLAGTVNAILRN 126 Query: 130 AAPVIR 135 A+ + Sbjct: 127 ASRKLE 132 >UniRef50_A3EVA3 Transcription antitermination factor (NusB) n=2 Tax=Leptospirillum sp. Group II RepID=A3EVA3_9BACT Length = 168 Score = 114 bits (286), Expect = 1e-24, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 64/133 (48%), Gaps = 5/133 (3%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLM 66 +AR +Q+L++ + F + L+ L + + +D ++ Sbjct: 22 HKARIEVLQSLFA----GEYLPGGPPPFTLTSTLPSQARLFRDRLGGAIREHREEIDTVI 77 Query: 67 KPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 + L+ + +V++ +LR+ + E+ +VP++V ++E++ELA F ++ +F+NG Sbjct: 78 SRFSVDWTLDRMSRVDRNILRMGICEILFEPEVPFRVTVDESLELAHQFSEPEAVRFING 137 Query: 126 VLDKAAPVIRPNK 138 +L + + P K Sbjct: 138 ILHRVGTELNPEK 150 >UniRef50_C7H5H8 Ribosomal RNA small subunit methyltransferase B n=2 Tax=Faecalibacterium prausnitzii RepID=C7H5H8_9FIRM Length = 440 Score = 114 bits (286), Expect = 1e-24, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 1/109 (0%) Query: 21 QLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQV 80 Q V L Q ++ D + + V + LD +++ +L + L L Sbjct: 16 QEQDGFSNLVLDAELRRQKLEGRDKAFAGAIFYTVLEHQGTLDFILEQFLPKGLARLDPQ 75 Query: 81 EKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 + +LR AL + VP A+NEA++L ++F + VN VL K Sbjct: 76 VREILRAALAQARYMQ-VPVSAAVNEAVKLTRTFKKASASGLVNAVLRK 123 >UniRef50_C0VVW4 Transcription antitermination protein NusB n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VVW4_9CORY Length = 342 Score = 114 bits (286), Expect = 1e-24, Method: Composition-based stats. Identities = 43/143 (30%), Positives = 65/143 (45%), Gaps = 8/143 (5%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAE----QDVKDVDVLYFRELLAGVAT 57 K AR +AR A + L+ + D +V + V Y RE++ GVA Sbjct: 9 KHGARYKARRHAAEILFEAEARDIDPVEVTRTREELSHGPEPVTAPVRPYTREIIEGVAV 68 Query: 58 NTAYLDGLMKPYL---SRLLEELGQVEKAVLRIALYELSKR-SDVPYKVAINEAIELAKS 113 N +D ++ L + L V++AVLR+A +EL S+VP K A+ +A+EL Sbjct: 69 NLDLIDFAIERELADTDWTFDRLPGVDRAVLRVATWELLFNASNVPQKTAVTQAVELVSQ 128 Query: 114 FGAEDSHKFVNGVLDKAAPVIRP 136 +DS +VN VLD Sbjct: 129 LSTDDSPAYVNAVLDAMWKNPES 151 >UniRef50_B4CZF1 Sun protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CZF1_9BACT Length = 410 Score = 114 bits (286), Expect = 1e-24, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 9/129 (6%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R+ V AL W+ + ++ + L + ++ +D +F E GV N + LD L+ Sbjct: 4 RQSCVLALLEWEKGKYFSDEILHTSLEKNPMQPLDRAFFMETFFGVLRNLSRLDFLIGQL 63 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 + +AVLR+ LY++ A+NE++ L + VN +L + Sbjct: 64 REGR---IDPQTRAVLRLGLYQIFHM-RTAPHAAVNESVAL-----GGRARGLVNAILRR 114 Query: 130 AAPVIRPNK 138 A + Sbjct: 115 ALREKEALE 123 >UniRef50_Q8DSE9 N utilization substance protein B homolog n=5 Tax=Streptococcus RepID=NUSB_STRMU Length = 142 Score = 113 bits (285), Expect = 1e-24, Method: Composition-based stats. Identities = 39/131 (29%), Positives = 70/131 (53%), Gaps = 4/131 (3%) Query: 5 ARRRARECAVQALYSWQLSQNDIADV-EYQFLAEQDVKDVDVL-YFRELLAGVATNTAYL 62 +RR RE A QAL+S + +++ + + ++ ++ + L+ GV+ + Sbjct: 8 SRRDLRERAFQALFSLEFGGDNLTAARFAYTYDKNEEEEAELPLFLLTLIQGVSDCRREI 67 Query: 63 DGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 D + +L L L ++K++LR+ LYE+ + P +VA+NE IE+AK + E S Sbjct: 68 DKNISIHLKSGWTLSRLTLIDKSLLRLGLYEIKYHKETPERVALNEIIEIAKKYSDEKSS 127 Query: 121 KFVNGVLDKAA 131 KF+NGVL + Sbjct: 128 KFINGVLSQFV 138 >UniRef50_A8YVW1 rRNA methylase n=27 Tax=Lactobacillus RepID=A8YVW1_LACH4 Length = 454 Score = 113 bits (284), Expect = 2e-24, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 60/142 (42%), Gaps = 6/142 (4%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 K + + AR +++ L + + L D+ D ++ G + Sbjct: 12 KLSTNKSARAISLETLIKVLQNGSYSNISLNNSLKHSDLSIADQNLATRIVYGTIQYRLF 71 Query: 62 LDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 L+ + L + E + K +L ++LY++ VP + ++EA +LAK FG S Sbjct: 72 LEYQLTGLLKTKITE--KYLKPLLLMSLYQIIFLDKVPNRAVLDEANKLAKQFGKHHSSG 129 Query: 122 F--VNGVLDKAAPV--IRPNKK 139 + VNG+L I P++K Sbjct: 130 YRVVNGILRAFIRRGVILPDEK 151 >UniRef50_Q03W17 tRNA and rRNA cytosine-C5-methylase n=11 Tax=Lactobacillales RepID=Q03W17_LEUMM Length = 448 Score = 113 bits (284), Expect = 2e-24, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 53/125 (42%), Gaps = 3/125 (2%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R AVQ L + + Q + + + + D L+ GV + + ++P+ Sbjct: 12 RVLAVQTL-AKIKNGAYSNLQLNQVIKQHKLGEADTRLLTTLVYGVIQHRLTFEYWLEPF 70 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 + +++ + +L A++++ +P NE+IE+AK G + KFV +L Sbjct: 71 VGS--KKIDPWVRELLYTAIFQMEYLDKIPQHAIFNESIEVAKILGHVGTGKFVTAILHN 128 Query: 130 AAPVI 134 + Sbjct: 129 ISRKG 133 >UniRef50_Q8EKR0 Ribosomal RNA small subunit methyltransferase B n=20 Tax=Gammaproteobacteria RepID=RSMB_SHEON Length = 428 Score = 113 bits (284), Expect = 2e-24, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 47/127 (37%), Gaps = 2/127 (1%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R A +A++ ++ + D EL GV ++ Sbjct: 4 RALAAKAIFDVLEKGVSLSVALPEQQKHLA-SGKDKALLAELCYGVMRTLPQIEKRTAEC 62 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 L++ L+ ++ +L + Y+L + +P AI+E E + E K VNGVL Sbjct: 63 LAKPLKGKQRIIHQLLIVGCYQL-YFTRIPSHAAISETAEACRQLKFEGMVKVVNGVLRN 121 Query: 130 AAPVIRP 136 + P Sbjct: 122 IQRQLTP 128 >UniRef50_C5RKK7 NusB antitermination factor n=1 Tax=Clostridium cellulovorans 743B RepID=C5RKK7_CLOCL Length = 134 Score = 113 bits (284), Expect = 2e-24, Method: Composition-based stats. Identities = 42/133 (31%), Positives = 73/133 (54%), Gaps = 6/133 (4%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLA-----EQDVKDVDVLYFRELLAGVATN 58 RR+ RE A++ YS + Q D V F ++D+KDVD + +L+G++ N Sbjct: 1 MNRRKTREIAIKLTYSLMIQQIDYKTVIENFKEVEDKEDEDLKDVDFTFVETILSGISEN 60 Query: 59 TAYLDGLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 + + L+ L L + ++ A+L +A+YE+ D+P V+INEA+E+AK + + Sbjct: 61 KSNYEELVSQNLIGWKLNRISKLNLAILLVAIYEIKNIDDIPKAVSINEAVEIAKKYSDD 120 Query: 118 DSHKFVNGVLDKA 130 + F+N +LDK Sbjct: 121 KAPNFINSILDKI 133 >UniRef50_Q2BQD6 Fmu, rRNA SAM-dependent methyltransferase n=1 Tax=Neptuniibacter caesariensis RepID=Q2BQD6_9GAMM Length = 432 Score = 113 bits (283), Expect = 2e-24, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 50/127 (39%), Gaps = 3/127 (2%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLM 66 + R A QAL ++ + E+ D D REL G L+ ++ Sbjct: 3 KNIRTLAAQALTPLLQNKGSLNTKYPAI--ERRCADKDRGLLRELCYGTLRYYPQLNRVL 60 Query: 67 KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGV 126 + +R + +A+ + LY++ + +P AI+E +E K + K +N + Sbjct: 61 QLLQNRPFKYKDIDVRALALVGLYQIQH-TRIPAHAAIHETVEACKELNKPGAAKLLNAI 119 Query: 127 LDKAAPV 133 L + Sbjct: 120 LRRFQRE 126 >UniRef50_A5CWS4 N utilization substance protein B n=2 Tax=sulfur-oxidizing symbionts RepID=A5CWS4_VESOH Length = 141 Score = 113 bits (283), Expect = 2e-24, Method: Composition-based stats. Identities = 52/136 (38%), Positives = 82/136 (60%), Gaps = 1/136 (0%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 ++R RE +QALY + +S ++ +E QFL ++ + ++F +L + N L Sbjct: 4 KTPKQRTRERVIQALYQYLVSGGEVFQIEQQFLNQKQ-GKISKVFFSDLFINILENRFVL 62 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 D L+ +SR EELG VE ++L + +EL S+VPYKV INE++ LAK +GAE S+K Sbjct: 63 DELITSTISRGTEELGSVEHSILYLGTFELKFNSEVPYKVVINESLALAKLYGAEGSYKL 122 Query: 123 VNGVLDKAAPVIRPNK 138 +N LDK A ++R + Sbjct: 123 INVSLDKLARILRKIE 138 >UniRef50_C6QHP1 NusB antitermination factor n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QHP1_9RHIZ Length = 170 Score = 113 bits (283), Expect = 2e-24, Method: Composition-based stats. Identities = 42/135 (31%), Positives = 72/135 (53%), Gaps = 10/135 (7%) Query: 14 VQALYSWQLSQNDIADVEYQFL--------AEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 VQALY ++ D+ DV +FL ++ + D ++F ++L V +D + Sbjct: 23 VQALYQMDMAGTDLNDVIAEFLNERLSGDNRDEMLAGADRVFFADILRAVVRRQREIDPM 82 Query: 66 MKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 + L+ L + + +A+LR + EL R DVP +VAI+E + +A+ F E+ + V Sbjct: 83 IDEQLAVGWRLVRVDSILRAILRGGVAELVDRYDVPARVAISEYVNVARVFFDEEEPRVV 142 Query: 124 NGVLDKAAPVIRPNK 138 NGVLDK A +R ++ Sbjct: 143 NGVLDKLARRLRTSE 157 >UniRef50_A6DTV7 NusB antitermination factor n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DTV7_9BACT Length = 156 Score = 113 bits (283), Expect = 2e-24, Method: Composition-based stats. Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 11/148 (7%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAE----------QDVKDVDVLYFREL 51 K R R+ A+Q LY +++ + + E+ + + + RE+ Sbjct: 6 KRNPRSLGRKWALQYLYQSDIAKLEFQEEEFALFIDQIENAPSAPNEHESSKGFAFAREI 65 Query: 52 LAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIEL 110 + GV +D + ++ + ++ VLRIA++EL + V +NEA+EL Sbjct: 66 IQGVLDKVKEIDAYITEEAKNWKIDRMATTDRNVLRIAVFELMEIKSNHPVVIVNEAVEL 125 Query: 111 AKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 AK+FG DS KFVNG+ D A +RP + Sbjct: 126 AKTFGNTDSFKFVNGIGDTLARKLRPEE 153 >UniRef50_B9E100 N utilization substance protein B homolog n=14 Tax=Clostridium RepID=NUSB_CLOK1 Length = 156 Score = 113 bits (283), Expect = 2e-24, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 21/153 (13%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAE--------------------QDVKDV 43 R++ RE ++ L+ +++ + D+K++ Sbjct: 1 MNRKKTRELTMKLLFQMAINKEKADVIISNLKENIEMEQGSQKNSISQIYGENMGDLKNI 60 Query: 44 DVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKV 102 D+ Y +L G+ N L+ ++ YL L L +V+ A+L+I YE D+P KV Sbjct: 61 DIDYVVRVLRGIEKNEDMLNIEIEKYLRNWKLNRLSKVDSAILKICTYEFLHEDDIPEKV 120 Query: 103 AINEAIELAKSFGAEDSHKFVNGVLDKAAPVIR 135 +INEAIELAK + +E S F+NGVL + Sbjct: 121 SINEAIELAKKYSSEKSASFINGVLGNMIKDEK 153 >UniRef50_C6XHS5 Transcription antitermination protein NusB n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XHS5_LIBAP Length = 170 Score = 113 bits (283), Expect = 3e-24, Method: Composition-based stats. Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 14/148 (9%) Query: 2 KPAARR-RARECAVQALYSWQLSQNDIADVEYQ-----FLAEQDVKDV------DVLYFR 49 K + RR AR AVQALY + ++ + F A+ ++ D+ +FR Sbjct: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 Query: 50 ELLAGVATNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEA 107 ++ GV ++D L+ L L + ++LR + EL + VP +V I+E Sbjct: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 Query: 108 IELAKSFGAEDSHKFVNGVLDKAAPVIR 135 + +A F D KF+N VLDK + Sbjct: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEE 158 >UniRef50_Q057F3 N utilization substance protein B homolog n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=NUSB_BUCCC Length = 142 Score = 112 bits (282), Expect = 3e-24, Method: Composition-based stats. Identities = 59/139 (42%), Positives = 88/139 (63%), Gaps = 2/139 (1%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIA-DVEYQFLAEQDVKDVDVLYFRELLAGVATNT 59 MK + RR+ARE A+Q LYSWQ+S+ + + E + + +D +YF +++ GV N Sbjct: 1 MK-SKRRKARELAIQVLYSWQISKKIVLFETEKYVIEQNKKYSLDKIYFHKIVTGVIKNI 59 Query: 60 AYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 Y+D ++K +S+ L +E+A+LR+A YE+ KR D+PYKV INE IELAK +G+ S Sbjct: 60 FYIDKIIKKNISKKKNRLDYIEQAILRLASYEIIKRLDIPYKVIINEGIELAKIYGSNKS 119 Query: 120 HKFVNGVLDKAAPVIRPNK 138 HKF+N +LDK K Sbjct: 120 HKFINSILDKIITNKNNIK 138 >UniRef50_C0EFY5 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EFY5_9CLOT Length = 132 Score = 112 bits (282), Expect = 3e-24, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 7/136 (5%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLA--EQDVKDVDVLYFRELLAGVATNTAY 61 R + RE A ++ + +D+++V E +V + F GV + + Sbjct: 1 MKRHQMRENAFILVFEKIFNDDDVSEVIAAAEECGEFEVNSDVIALFT----GVQQHISE 56 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD L+ +L++ + L +V A+LR+A+YE+ V +AINEA+ELAK + ++ Sbjct: 57 LDRLISEHLTKWNITRLSKVILAILRLAVYEIVYVERVEAPIAINEAVELAKEYATQEDA 116 Query: 121 KFVNGVLDKAAPVIRP 136 FVNGVL Sbjct: 117 AFVNGVLGSFVRAAEK 132 >UniRef50_Q2W4S5 N utilization substance protein B homolog n=3 Tax=Magnetospirillum RepID=NUSB_MAGSA Length = 156 Score = 112 bits (282), Expect = 3e-24, Method: Composition-based stats. Identities = 40/143 (27%), Positives = 65/143 (45%), Gaps = 8/143 (5%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQ------DVKDVDVLYFRELLAGVAT 57 A R AR AVQ LY +++ D + + D D +++ GV+ Sbjct: 9 AKRSAARLAAVQVLYQMEMTGADTERALQDAKDRRAAEPKGRMADPDNSLLNQVVRGVSA 68 Query: 58 NTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG 115 +DG + L +E L V +A++R +ELS R P +V I+E +++A +F Sbjct: 69 QLEDIDGHVGRALSGDWTVERLEAVLRAIVRAGAWELSARPQTPARVCISEWVDVAHAFY 128 Query: 116 AEDSHKFVNGVLDKAAPVIRPNK 138 + VNGVLD A +R + Sbjct: 129 SGPEPGLVNGVLDHLAQTLRGGE 151 >UniRef50_C9LLB0 Transcription antitermination factor NusB n=1 Tax=Dialister invisus DSM 15470 RepID=C9LLB0_9FIRM Length = 133 Score = 112 bits (281), Expect = 4e-24, Method: Composition-based stats. Identities = 39/130 (30%), Positives = 68/130 (52%), Gaps = 6/130 (4%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +R +ARE A++ LY+ +++ E + + + L+ V + +D Sbjct: 1 MSRSKAREHALKVLYAKEIN---PNTAELSADISDALSEKGKSFSDFLVEQVQLHRDEID 57 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYEL--SKRSDVPYKVAINEAIELAKSFGAEDSH 120 G + +L + L +L V+K +LRIA+ E + KV INEA+ELAK +G E+S+ Sbjct: 58 GEIVRFLKKWSLSQLNIVDKNILRIAIAEFNYTYEDKADRKVIINEAVELAKVYGGENSY 117 Query: 121 KFVNGVLDKA 130 +F+NG+L Sbjct: 118 RFINGILSAV 127 >UniRef50_C5NYK7 Transcription antitermination factor NusB n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NYK7_9BACL Length = 131 Score = 111 bits (280), Expect = 4e-24, Method: Composition-based stats. Identities = 40/135 (29%), Positives = 73/135 (54%), Gaps = 9/135 (6%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK +R RE + L+ + ++ D ++ L ++++ Y + L + Sbjct: 1 MK--SRHELREAVFKILFQVENTELDFIELLD--LEQEEISTSI--YVNKTLTEILEKKE 54 Query: 61 YLDGLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG-AED 118 +D ++ L LE L ++++ +LRI+ YE+ SD+PYKV+INEA+EL+K + ++ Sbjct: 55 EIDEIISNNLKDWKLERLSKMDRQILRISAYEILY-SDIPYKVSINEAVELSKKYSEKDE 113 Query: 119 SHKFVNGVLDKAAPV 133 S+KF+NGVL Sbjct: 114 SYKFINGVLKGIVEN 128 >UniRef50_D1VSE3 Ribosomal RNA small subunit methyltransferase B n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSE3_9FIRM Length = 430 Score = 111 bits (280), Expect = 5e-24, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 59/129 (45%), Gaps = 1/129 (0%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 R+ A+ + + + + + + ++ D D + + + GV N YLD ++K Sbjct: 3 NIRQKALFIIDNVYNKGAFLEEQLN-IIKQSNISDRDFTFIKNITTGVIRNRTYLDYVIK 61 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 +++ ++ +L +A+Y+ +P ++E+++LAK +G + S FVN +L Sbjct: 62 INSKIRFKKIHKIIAIILEMAIYQYYFLDKIPNYSIVDESVKLAKLYGNKGSSSFVNAIL 121 Query: 128 DKAAPVIRP 136 + Sbjct: 122 RNIVSKDKE 130 >UniRef50_C6BVK4 NusB/RsmB/TIM44 n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BVK4_DESAD Length = 427 Score = 111 bits (280), Expect = 5e-24, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 45/123 (36%), Gaps = 2/123 (1%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R A + + D V L + D + E+L G L ++ + Sbjct: 11 RGVAYECVTRSLDGGADAQAVLDNALTAAKLDGRDRGFVTEILYGYLRMRLRLQSVLNCF 70 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 LSR + L VL +A YE+ DVP +++ ++ AK N VL K Sbjct: 71 LSRP-DGLPAPILRVLGMAAYEILHM-DVPAYASVDWGVDSAKRLSRGKLGGLANAVLRK 128 Query: 130 AAP 132 A Sbjct: 129 VAR 131 >UniRef50_D2R650 NusB antitermination factor n=2 Tax=Planctomycetaceae RepID=D2R650_9PLAN Length = 136 Score = 111 bits (279), Expect = 6e-24, Method: Composition-based stats. Identities = 52/134 (38%), Positives = 73/134 (54%), Gaps = 3/134 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVD-VLYFRELLAGVATNTAYL 62 A R RARE +Q LY L+ + V FL + DV+ V + R+LL GV L Sbjct: 2 ARRSRAREVVLQILYEDDLNPDRSIAVSDVFLRRRLGDDVELVDFARDLLRGVRGRRKEL 61 Query: 63 DGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D L++ L+ + ++ VLR+ YE+ + P +VAINEA+ELAK FGA S + Sbjct: 62 DVLLQQKADHWTLDRMAVTDRNVLRLGAYEILH-TQTPQRVAINEAVELAKRFGARQSPQ 120 Query: 122 FVNGVLDKAAPVIR 135 FVNG+LD+ R Sbjct: 121 FVNGILDRFLQKKR 134 >UniRef50_C1A605 Putative rRNA methyltransferase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A605_GEMAT Length = 428 Score = 111 bits (279), Expect = 7e-24, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 41/104 (39%) Query: 35 LAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSK 94 + D + +EL+ GV + LD ++ + L L +LR+ Y+L Sbjct: 13 RRTPTLDARDRRWVQELVWGVLRHRERLDAILATRIRGGLSVLDDGVLDILRLGTYQLLS 72 Query: 95 RSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 VP AI +++E K + K VN VL + + Sbjct: 73 MDSVPPYAAIGQSVEAVKRKHGIGAGKLVNAVLRRIDRERATIE 116 >UniRef50_O66530 N utilization substance protein B homolog n=3 Tax=Aquificaceae RepID=NUSB_AQUAE Length = 148 Score = 111 bits (279), Expect = 7e-24, Method: Composition-based stats. Identities = 36/130 (27%), Positives = 67/130 (51%), Gaps = 4/130 (3%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDV-LYFRELLAGVATNTAYLDG 64 R+ AR+ A LY W L + ++ + + E+++K+ D Y ++L+ + +D Sbjct: 4 RKGARDTAFLVLYRWDLRGENPGELFKEVVEEKNIKNKDAYEYAKKLVDTAVRHIEEIDS 63 Query: 65 LMKPYLSRL-LEELGQVEKAVLRIALYELSKRS-DVPYKVAINEAIELAKSFGAEDSHKF 122 +++ +L ++ LG VE+ LR+ + EL P +V I+ ++L K + E + KF Sbjct: 64 IIEKHLKGWSIDRLGYVERNALRLGVAELIFLKSKEPGRVFID-IVDLVKKYADEKAGKF 122 Query: 123 VNGVLDKAAP 132 VNGVL Sbjct: 123 VNGVLSAIYK 132 >UniRef50_B1C650 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C650_9FIRM Length = 132 Score = 111 bits (278), Expect = 8e-24, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 2/132 (1%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 R AR+ + ++ + + Q + + +K Y ++ + G+ N +D Sbjct: 1 MKRDVARDLVYKIIFQINFHDDFA-ERYEQMILDSGIKGTQGEYAKKTVKGILDNLEEID 59 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 +K L E L AVLR+ ++E+ D+P V +NEA+ LA ++ E F Sbjct: 60 DTIKDNLKGWKFERLSTHVIAVLRLGVFEIMYNEDIPPLVGLNEAVSLAHTYSDEKEATF 119 Query: 123 VNGVLDKAAPVI 134 VNG+L+ + Sbjct: 120 VNGLLNSVYKKV 131 >UniRef50_A1V9B6 NusB/RsmB/TIM44 n=3 Tax=Desulfovibrio vulgaris RepID=A1V9B6_DESVV Length = 507 Score = 111 bits (278), Expect = 8e-24, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 49/124 (39%), Gaps = 1/124 (0%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR A+ AL + + D+ L+ + D EL+ G + L L++ Sbjct: 36 ARAGALVALDAVVRAGVDVQAALDDSLSHASLSRQDAALCTELVYGYLRSEIRLSWLVRR 95 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 +L +L A+L +A YEL++ VP ++ A+ ++ + N VL Sbjct: 96 FLKAP-SKLPPGVLALLCLAAYELTQCDRVPAYATLDWAVSAVRALYGTGVSRLANAVLR 154 Query: 129 KAAP 132 Sbjct: 155 NVDR 158 >UniRef50_C0GN53 NusB/RsmB/TIM44 n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GN53_9DELT Length = 417 Score = 111 bits (278), Expect = 8e-24, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 45/123 (36%), Gaps = 2/123 (1%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R A+ + D+ V + L + ++ D EL G LD ++ + Sbjct: 8 RAVALNVVLDALRPGRDLQMVLDRNL-DPEMDLRDRSLATELAYGYLRYKGRLDFVLNCF 66 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 L L + ++ +A YE+ +P A++ A+ L + VN VL K Sbjct: 67 LKSP-AGLSGKIRVLMGLAAYEIFFLERIPDYAAVSRAVALTRKRFGSRMSSLVNAVLRK 125 Query: 130 AAP 132 Sbjct: 126 CCR 128 >UniRef50_C0VVY3 Possible rRNA SAM-dependent methyltransferase RmsB n=1 Tax=Corynebacterium glucuronolyticum ATCC 51867 RepID=C0VVY3_9CORY Length = 470 Score = 111 bits (278), Expect = 9e-24, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 40/114 (35%), Gaps = 5/114 (4%) Query: 20 WQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQ 79 + + E + D + E+ G LD ++ SR + EL Sbjct: 1 MFNDGAYGNIALPREITEAGLSGRDAAFATEIGYGTMRMVGVLDEIIGSCSSRPMSELDP 60 Query: 80 VEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPV 133 + LR+ +Y+L + V A++ ++ L + FVN +L Sbjct: 61 IVLNALRMGIYQLLY-TRVEDHAAVDTSVRLV----PQRVKGFVNAILRAVQKK 109 >UniRef50_C2KVE0 Possible rRNA (Cytosine-5-)-methyltransferase n=1 Tax=Oribacterium sinus F0268 RepID=C2KVE0_9FIRM Length = 449 Score = 110 bits (277), Expect = 1e-23, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 47/121 (38%), Gaps = 1/121 (0%) Query: 20 WQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELG 78 I + ++ + + + + G+ LD ++ Y S L++L Sbjct: 56 VFYEGEFIHLALRKLFSDYPGLGNREKAFLTRSSHGILERYLQLDYVISLYSSVKLKKLK 115 Query: 79 QVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 V LRIA+Y+L +P ++EA++ K + FVN VL K K Sbjct: 116 PVVLLSLRIAIYQLLFMDKIPEHAIVDEAVKSIKKRKLQGLVPFVNAVLRKIVGEKEEIK 175 Query: 139 K 139 K Sbjct: 176 K 176 >UniRef50_A3UCC3 Transcription antitermination protein NusB n=1 Tax=Oceanicaulis alexandrii HTCC2633 RepID=A3UCC3_9RHOB Length = 158 Score = 110 bits (277), Expect = 1e-23, Method: Composition-based stats. Identities = 41/132 (31%), Positives = 59/132 (44%), Gaps = 10/132 (7%) Query: 14 VQALYSWQLSQNDIADVEYQFLAEQ--------DVKDVDVLYFRELLAGVATNTAYLDGL 65 VQALY + S + V +F + D + D +F L+ G+ + A +D Sbjct: 25 VQALYQMETSGSGAKAVVKEFRDHRFGYEDEPGDYVETDEDFFENLVTGIVSIQADVDKR 84 Query: 66 MKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 + L L L +A+LR YEL R DVP V INE +++A +F FV Sbjct: 85 ISGVLKEGWKLSRLDATVRAILRAGGYELIARKDVPPAVVINEYVDVAHAFFEGTEPGFV 144 Query: 124 NGVLDKAAPVIR 135 N LD A +R Sbjct: 145 NATLDALAKQVR 156 >UniRef50_C7GZX3 16S rRNA M(5)C 967 methyltransferase n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZX3_9FIRM Length = 461 Score = 110 bits (277), Expect = 1e-23, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 5/131 (3%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 + R A ALY+ + + + + + + + REL+ G LD M Sbjct: 9 KKRLAAFWALYNIE-KGKYSNVAFEE--STKGLSAREAAFVRELVFGTLKLNIKLDHAMN 65 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 +L + ++ +LR+ LY+L VP A+NE I +AK +N +L Sbjct: 66 -HLKDKKARIKLKDRILLRLGLYQLDYMDSVPDYAAVNETIAIAKKLVKNK-VGLINAIL 123 Query: 128 DKAAPVIRPNK 138 + + Sbjct: 124 RGYIRKRQEIE 134 >UniRef50_C0XM65 rRNA SAM-dependent methyltransferase RmsB n=3 Tax=Lactobacillus RepID=C0XM65_LACHI Length = 444 Score = 110 bits (277), Expect = 1e-23, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 3/131 (2%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 RE AV+ L + + + DVD F ++ GV + L+ + P+ Sbjct: 9 RELAVRTLLR-TSGGSYSNLQINAVIESTSMSDVDKALFTNIVYGVIQHRMTLEYQLVPF 67 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 L + K +L A+Y+L VP + +E+I++AKS G + + +FV G+L + Sbjct: 68 LKDSEKTED-WVKELLYTAMYQLEYLDRVPKRAIFDESIKIAKSMGHDGTRRFVTGILHQ 126 Query: 130 AAPV-IRPNKK 139 +R K Sbjct: 127 MDRKGVREPDK 137 >UniRef50_UPI0001C3796F transcription termination factor n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C3796F Length = 138 Score = 110 bits (277), Expect = 1e-23, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 66/136 (48%), Gaps = 3/136 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +RR R+ A + ++ L +DI ++ ++ D ++++ G + LD Sbjct: 1 MSRREIRDSAFKLVFEQLLRDDDITELYDIAEEIDEIIVNDE--VKKIVEGTLAHAEELD 58 Query: 64 GLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ Y R L + ++ A+LRIA+YE + P AI+EAI LA ++ + KF Sbjct: 59 SIIAGYSKSRSLSRISKLNIAILRIAIYESLYDDNTPMNAAISEAINLANTYSYNEDSKF 118 Query: 123 VNGVLDKAAPVIRPNK 138 +NGVL + + + Sbjct: 119 INGVLGAFSRDQKQKE 134 >UniRef50_B5YF43 Ribosomal RNA small subunit methyltransferase B n=2 Tax=Dictyoglomus RepID=B5YF43_DICT6 Length = 430 Score = 110 bits (277), Expect = 1e-23, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 50/126 (39%), Gaps = 3/126 (2%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 R A + LY + + + + L ++ + + EL+ GV LD + Sbjct: 2 EVRLKAAEILYDLEKREAYLNLLLRSRLPSYNLSLKEKHFITELVYGVTRWKTTLDYIWS 61 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 ++ R + L + +LR+ Y + D +A+NE +E+AK K +N V Sbjct: 62 RFVKR--DNLSLFGRILLRLVAYHIYFLKDTILPIAVNEIVEIAKR-KVPKEAKLINAVS 118 Query: 128 DKAAPV 133 + Sbjct: 119 RRMVKE 124 >UniRef50_A9KMC2 N utilization substance protein B homolog n=17 Tax=Bacteria RepID=NUSB_CLOPH Length = 132 Score = 110 bits (276), Expect = 1e-23, Method: Composition-based stats. Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 3/131 (2%) Query: 4 AARRRARECAVQALYSWQLSQ--NDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 RR RE + L+ + + V + F + + + Y + Sbjct: 1 MTRREIREHLFRMLFRKEFHEPTELEEQVLFYFDSLESITPEQQEYLNVRFDKINEKLGE 60 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D ++ S L +G+V+ ++R+A +E+ +VP KVAINEAIELAK +G + S Sbjct: 61 IDTILANASSGWKLNRMGKVDLNIMRLATFEIRFDDEVPVKVAINEAIELAKKYGGDSSA 120 Query: 121 KFVNGVLDKAA 131 FVNG+L K Sbjct: 121 SFVNGILAKVI 131 >UniRef50_A6VR79 Sun protein n=2 Tax=Marinomonas RepID=A6VR79_MARMS Length = 462 Score = 110 bits (276), Expect = 1e-23, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 57/134 (42%), Gaps = 3/134 (2%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 K ++ AR+ A++ + + L Q ++ + + DV +EL GV Sbjct: 16 KSTGQQSARQVAIKVITNILLQQGSLSTQLARH--QLDVASEHAPMLKELCFGVCRQYPR 73 Query: 62 LDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 L+ + L+ EE AVL + LY+L+ + P A+NE +E + + + K Sbjct: 74 LNSIALHLLAHPFEEKDTDLYAVLLLGLYQLTYM-NTPDHAAVNETVEACRILNKDWATK 132 Query: 122 FVNGVLDKAAPVIR 135 +N VL + Sbjct: 133 LMNAVLRRYQREAD 146 >UniRef50_Q0BTF1 N utilization substance protein B homolog n=11 Tax=Acetobacteraceae RepID=NUSB_GRABC Length = 163 Score = 110 bits (276), Expect = 1e-23, Method: Composition-based stats. Identities = 39/152 (25%), Positives = 65/152 (42%), Gaps = 15/152 (9%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQF-------------LAEQDVKDVDVLYF 48 + R +R AVQAL+ + +Q + V QF + + D +V F Sbjct: 4 RTRPRTASRVAAVQALFQGEQAQESLEAVIEQFVRFRLGALPGQDGFEDGRIPDAEVPLF 63 Query: 49 RELLAGVATNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINE 106 ++ +D L+ L L L V +A+LR EL + P +V INE Sbjct: 64 SRIVRAATKEQDVIDPLLITALPAEWPLARLDPVLRALLRAGACELRMKDGPPPRVVINE 123 Query: 107 AIELAKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 +++A F + + VNG+L+ A +RP + Sbjct: 124 YLDIAHGFFQGEEPRMVNGILNALARQLRPEE 155 >UniRef50_D2L7S0 NusB/RsmB/TIM44 n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L7S0_9DELT Length = 451 Score = 110 bits (276), Expect = 1e-23, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 53/140 (37%), Gaps = 13/140 (9%) Query: 9 ARECAVQALYSWQLSQ-----------NDIADVEYQFLA-EQDVKDVDVLYFRELLAGVA 56 AR+ A+ L ++ D+ LA + + D EL+ G Sbjct: 12 ARKLALAVLGRVFPAKGAARGPGPGGGQDVQAALDTALAGTKGLDPRDRGLATELVYGYL 71 Query: 57 TNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 +D ++ +L + E + + VL +A+YE+ S VP +++ A+ + Sbjct: 72 RLCGRIDWMLSRFLKKP-EAVPLPVRRVLGLAVYEILYCSRVPAYASVDWAVSAVRRLSG 130 Query: 117 EDSHKFVNGVLDKAAPVIRP 136 + N VL + A + Sbjct: 131 KGLGGMANAVLRRVAADPKA 150 >UniRef50_Q2J830 N utilization substance protein B homolog n=3 Tax=Frankia RepID=NUSB_FRASC Length = 135 Score = 110 bits (276), Expect = 1e-23, Method: Composition-based stats. Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 3/112 (2%) Query: 22 LSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQV 80 + + + ++ LA+ Y EL+ GV +D + Y LE + V Sbjct: 1 MRASAVPEILAARLAQS--DPPVSEYAVELVEGVVERRGEIDERIARYAEGWTLERMPPV 58 Query: 81 EKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAP 132 ++ +LRIA+ EL R DVP +VAI+EA+ELAK+ S FVNG+L Sbjct: 59 DRNILRIAVLELLWRPDVPDRVAIDEAVELAKNLSTHRSPAFVNGLLASLVE 110 >UniRef50_B3ERI6 Putative uncharacterized protein n=1 Tax=Candidatus Amoebophilus asiaticus 5a2 RepID=B3ERI6_AMOA5 Length = 378 Score = 110 bits (276), Expect = 2e-23, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 63/123 (51%), Gaps = 1/123 (0%) Query: 13 AVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSR 72 V+ L LS++DI + + + ++ +L+A ++D L++ ++ Sbjct: 256 VVKKLLHELLSKSDIELLVKEIEDAMQIGTNAASFYDKLIATALEQEKFIDNLIQQHIKN 315 Query: 73 L-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAA 131 +E +++ ++++ L E+ +P KVAINE ++LAK + S KF+NGVLD A Sbjct: 316 WSIERTVLLDRIIIKMGLCEMKYFDSIPTKVAINEYVDLAKKYSTAKSSKFINGVLDTIA 375 Query: 132 PVI 134 I Sbjct: 376 KTI 378 >UniRef50_C7RA09 Sun protein n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RA09_KANKD Length = 443 Score = 110 bits (275), Expect = 2e-23, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 51/130 (39%), Gaps = 4/130 (3%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLM 66 ++ R+ A AL++ DV EQ D FR L+ G L+ + Sbjct: 13 QQLRQQACLALHAIAFEGRSANDVLNSIQFEQG---SDNSLFRALVLGSCRYFIRLESIA 69 Query: 67 KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGV 126 K L + + Q ++ I LY+L S VP AI+E + + + + K VNGV Sbjct: 70 KQLLQKPFKPKDQDLLCLIIIGLYQLEY-SRVPDHAAISETVSVCEQLKKPWATKLVNGV 128 Query: 127 LDKAAPVIRP 136 L Sbjct: 129 LRNFVRQQPE 138 >UniRef50_A4BK87 Putative uncharacterized protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BK87_9GAMM Length = 427 Score = 110 bits (275), Expect = 2e-23, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 46/129 (35%), Gaps = 3/129 (2%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLM 66 R A + L + D + L + + ++L+ G LD L+ Sbjct: 2 TNTRLIAAEILLQVVDEGRSLNDELPRRLKH--IDPDQQAFLQQLVYGSTRYYFALDELI 59 Query: 67 KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGV 126 + + + ++ +L I LY+L DV AINE +E + + + VN Sbjct: 60 NLLVEKPIRGKERLVHMLLAIGLYQLWHL-DVAEHAAINETVEATLTAKKQWAKNLVNAS 118 Query: 127 LDKAAPVIR 135 L + Sbjct: 119 LRRFQRERE 127 >UniRef50_A9FBW8 Sun protein n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FBW8_SORC5 Length = 496 Score = 110 bits (275), Expect = 2e-23, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 49/129 (37%), Gaps = 1/129 (0%) Query: 12 CAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNTAYLDGLMKPYL 70 A + L S + L + D+ EL+ GV A L+ + + Sbjct: 33 VAARVLARVWGSDAFASAALDAELRRAPALDPRDIGLATELVYGVLRAQAALEARIAEFA 92 Query: 71 SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 ++ + +A + + Y L VP A++EA++ A++ G F N VL + Sbjct: 93 AKSRWTADPLVRAHVLMGAYSLCFLDRVPSFAAVSEAVDGAQAAGGPRVGAFANAVLRRL 152 Query: 131 APVIRPNKK 139 A + + Sbjct: 153 AAAVESGGR 161 >UniRef50_Q2NQQ2 Ribosomal RNA small subunit methyltransferase B n=264 Tax=Bacteria RepID=RSMB_SODGM Length = 433 Score = 110 bits (275), Expect = 2e-23, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 52/133 (39%), Gaps = 5/133 (3%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK R A +A+ + + + + + D +EL G+ Sbjct: 1 MKTH--YNLRVIAARAVAQVLDQGQSLGALLPPL--QAPLSEKDRALLQELCFGIMRVLP 56 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 L+ L++ +++ L + +L + LY+L+ + +P A+ E +E A + Sbjct: 57 QLEWLLRQLMAKPLTGKQRPVHYLLMVGLYQLTY-TRIPPHAALAETVEGAVAMKRPQFK 115 Query: 121 KFVNGVLDKAAPV 133 +NGVL + Sbjct: 116 GLINGVLRQFQRQ 128 >UniRef50_B8D2G0 N utilization substance protein B homolog n=1 Tax=Halothermothrix orenii H 168 RepID=NUSB_HALOH Length = 134 Score = 109 bits (274), Expect = 2e-23, Method: Composition-based stats. Identities = 47/137 (34%), Positives = 73/137 (53%), Gaps = 7/137 (5%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVK---DVDVLYFRELLAGVAT 57 MK R + R A+Q LYS +S + E K D YF +++ GV Sbjct: 1 MKI-TRHQERVWALQILYSLDISSELNIQKARKTCREFKYKKVLDKKRYYFEDIVEGVIN 59 Query: 58 NTAYLDGLMKPY-LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 + LD ++ Y + +E + +++ +LRIALYE+ S +P VAI+EA+E+AK FG Sbjct: 60 SRQDLDSIINKYAIDWDVERMACIDRNILRIALYEI--ESGLPVGVAIDEAVEIAKDFGD 117 Query: 117 EDSHKFVNGVLDKAAPV 133 +S KF+NG+L K+ Sbjct: 118 SNSPKFINGILAKSIED 134 >UniRef50_A5EWM0 RRNA SAM-dependent methyltransferase, Fmu n=2 Tax=Cardiobacteriaceae RepID=A5EWM0_DICNV Length = 418 Score = 109 bits (274), Expect = 2e-23, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 52/126 (41%), Gaps = 4/126 (3%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 +ARE A + L++ + + + F + + D+D ++EL+ G L L Sbjct: 2 KAREAAARTLFAVIEQRQSLNQLLPAF--KNQLPDIDRALYQELVYGTLREYRSLSFLHN 59 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 L + L+ + +L + +Y+L + + + ++E +EL K N VL Sbjct: 60 RLLHQPLD-KNPLPAIILNLGIYQLLRLT-LGDHGVVHETVELCKKLRCPAVSGLTNAVL 117 Query: 128 DKAAPV 133 + Sbjct: 118 RRVQRE 123 >UniRef50_UPI000174635C RsmB n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI000174635C Length = 414 Score = 109 bits (274), Expect = 3e-23, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 50/126 (39%), Gaps = 8/126 (6%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 +R+ A+Q L W+ S+ AD+ + A + D + L+ G N LD ++ Sbjct: 7 NSRQLALQILVEWERSEIYAADLIEKAAATHRLDHRDTALLQTLVMGTLRNIDLLDIWLE 66 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 + L +LR+ + +L ++P +NE + A + VN VL Sbjct: 67 RVCDN--QHLETSVHWLLRLGIAQLL-LLEMPAHAVVNETVNQA-----GKARGLVNAVL 118 Query: 128 DKAAPV 133 + Sbjct: 119 RRVDRE 124 >UniRef50_C5SLV1 NusB antitermination factor n=2 Tax=Caulobacteraceae RepID=C5SLV1_9CAUL Length = 177 Score = 109 bits (274), Expect = 3e-23, Method: Composition-based stats. Identities = 45/146 (30%), Positives = 68/146 (46%), Gaps = 15/146 (10%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFL-------------AEQDVKDVDVLYFREL 51 AR AR VQALY +++ + V +F EQ + D +F + Sbjct: 32 ARTVARLVLVQALYQMEIAGTGVESVIREFADFRFDGNIEGECGEEQRLGTADEAFFADG 91 Query: 52 LAGVATNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIE 109 L + A +D L+ L + L+ + +A+LR +EL R DV +V INE +E Sbjct: 92 LRTIVKAQAEIDVLIAERLASNWRLDRIDTTLRAILRAGAWELKFRPDVAVEVVINEYVE 151 Query: 110 LAKSFGAEDSHKFVNGVLDKAAPVIR 135 +AK+F + +FVNG LD A R Sbjct: 152 IAKAFFGNEEARFVNGALDGIAKDAR 177 >UniRef50_D0MH27 Sun protein n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MH27_RHOM4 Length = 453 Score = 109 bits (273), Expect = 3e-23, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 2/125 (1%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR AV+ L + Q + + L ++ + E +AGV +LD L+ Sbjct: 14 ARREAVRLLERIENDQAYVNRLMSAGLTDELEPEAGRR-ATEYVAGVTRWRRWLDFLLAQ 72 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 + + + +LR+ LYEL +D P A+NEA+ELA+ + VN VL Sbjct: 73 NYRGRYDSMEPRLRQILRLGLYELLF-TDTPPYAALNEAVELARRLVRPQAGAVVNAVLR 131 Query: 129 KAAPV 133 Sbjct: 132 SLLRQ 136 >UniRef50_A8TL32 NusB antitermination factor n=1 Tax=alpha proteobacterium BAL199 RepID=A8TL32_9PROT Length = 139 Score = 109 bits (273), Expect = 3e-23, Method: Composition-based stats. Identities = 42/129 (32%), Positives = 63/129 (48%), Gaps = 10/129 (7%) Query: 20 WQLSQNDIADVEYQF--------LAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL- 70 ++S +V +F + D+ D +F L+ GVA LDG++ L Sbjct: 1 MEVSGKSGHEVVPEFVGRRFAGLIEGGDMAPADPKFFERLVLGVAGEMPTLDGMLADCLQ 60 Query: 71 -SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 LE L V +A+ R+ YEL DVP +V I+E ++L +F A VNGVLDK Sbjct: 61 PEGHLERLEVVLRAIFRLGTYELLSVDDVPVRVVISEYVDLTHAFFAGREPGLVNGVLDK 120 Query: 130 AAPVIRPNK 138 A V+R ++ Sbjct: 121 IARVVREDE 129 >UniRef50_C3WQ58 16S rRNA m(5)C 967 methyltransferase n=15 Tax=Fusobacterium RepID=C3WQ58_9FUSO Length = 435 Score = 109 bits (273), Expect = 3e-23, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 48/129 (37%), Gaps = 5/129 (3%) Query: 11 ECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL 70 + A+ + + ++ + + E+ GV N +LD +++ Sbjct: 5 QVAINLISQVD-KGAYSNIALNETFKTLNINSKEKAFITEIFYGVIRNKKFLDYIIEKNT 63 Query: 71 SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 E + + +LRI++Y+++ K + EA ELAK KF+NG L Sbjct: 64 K---EIKKEWIRNLLRISIYQITFMDS-DNKGVVWEATELAKKKYGVPISKFINGTLRNY 119 Query: 131 APVIRPNKK 139 K Sbjct: 120 LRNKDSELK 128 >UniRef50_B0MDS2 Putative uncharacterized protein n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0MDS2_9FIRM Length = 131 Score = 109 bits (273), Expect = 4e-23, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 63/130 (48%), Gaps = 3/130 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQD--VKDVDVLYFRELLAGVATNTAY 61 R + RE + +S ++ + + + ++ + Y + + + Sbjct: 1 MTRSKLREQMFRLCFSIDFHTSEEFEAQADLYFSNNDFFRNKEKDYIKTRTLDMLSRLEE 60 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D + ++ LG+ E +LRIA+YE+ D+P KVAINEA+EL+K++ E + Sbjct: 61 IDQKINENSKGWDIKRLGKAELTILRIAVYEIMFDEDIPDKVAINEAVELSKTYCNEKAA 120 Query: 121 KFVNGVLDKA 130 F+NG+L K Sbjct: 121 SFINGILGKI 130 >UniRef50_A5WHT3 NusB antitermination factor n=1 Tax=Psychrobacter sp. PRwf-1 RepID=A5WHT3_PSYWF Length = 252 Score = 108 bits (272), Expect = 4e-23, Method: Composition-based stats. Identities = 46/145 (31%), Positives = 74/145 (51%), Gaps = 13/145 (8%) Query: 7 RRARECAVQALYSWQLSQ-------------NDIADVEYQFLAEQDVKDVDVLYFRELLA 53 R+AR A+Q LY W ++ N D+ + A + V + Y+ L+ Sbjct: 38 RKARRFALQGLYEWLMTDHRFEQMGQGEWKANPPHDIAARTRATNAMHTVHLGYYHTLMR 97 Query: 54 GVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKS 113 + L+ L+ +L R ++++ VE AVL I YEL +PYKV ++EA++L Sbjct: 98 EIPEQITDLEALIAQHLDRAIDKIDMVEHAVLLIGAYELKNSLHIPYKVVLDEAMKLNTH 157 Query: 114 FGAEDSHKFVNGVLDKAAPVIRPNK 138 FGA D+HK +N V+DK A +R + Sbjct: 158 FGATDAHKLINAVMDKLAAQLRTVE 182 >UniRef50_A7NB00 Transcription antitermination factor n=19 Tax=Francisella RepID=A7NB00_FRATF Length = 141 Score = 108 bits (272), Expect = 4e-23, Method: Composition-based stats. Identities = 48/141 (34%), Positives = 73/141 (51%), Gaps = 3/141 (2%) Query: 1 MKPAARRR--ARECAVQALYSWQLSQNDIADV-EYQFLAEQDVKDVDVLYFRELLAGVAT 57 MK AR R AR AVQALY +++ N +++ + D D F L+ V T Sbjct: 1 MKTTARARNNARLYAVQALYQKKIADNTFSELKIQYYADNADRHYTDWDLFYRLIDAVKT 60 Query: 58 NTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 N +D +K S +E + V+ VL++A+ EL + + PY+V I E +E+ S G E Sbjct: 61 NQDTIDKYIKENSSNGVESINYVDYVVLQVAIAELIECLENPYQVIIKEYVEICYSMGTE 120 Query: 118 DSHKFVNGVLDKAAPVIRPNK 138 + +KF+N VL A IR + Sbjct: 121 EGYKFINAVLQNLAKSIRSEE 141 >UniRef50_UPI0000D5356A transcription termination factor (NusB) n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D5356A Length = 127 Score = 108 bits (272), Expect = 4e-23, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 14 VQALYSWQLSQNDI--ADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLS 71 +Q LY ++ ++F + K + EL+ G+A +D ++ L Sbjct: 1 MQFLYGNEIQGETEITDGKLHEFWELRLTKTFARDFAAELVKGIARELPLIDEAIEDSLE 60 Query: 72 R-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 L V++ +LR+A YE+ +P + AINEAIE+AK G+EDS F+NG+LD+ Sbjct: 61 NYSFGRLANVDRNILRLATYEILFADHIPGQAAINEAIEVAKRLGSEDSPSFINGILDRI 120 Query: 131 AP 132 Sbjct: 121 LQ 122 >UniRef50_B8KLT3 Ribosomal RNA small subunit methyltransferase B n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KLT3_9GAMM Length = 433 Score = 108 bits (272), Expect = 4e-23, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 47/136 (34%), Gaps = 6/136 (4%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MKP A R CA + + L + + L + D RE+ G Sbjct: 1 MKPGA--AVRACAARIIAEV-LRGDSLDRALESHLTI--LPGRDQPLCREICFGTLRQYP 55 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD L+ L + L + A+ LY+L+ +P A++ ++ A Sbjct: 56 RLDALLGQLLQKPLRAKDRDVHALALAGLYQLTSM-RIPAHAAVSATVDAATVLKKRQLS 114 Query: 121 KFVNGVLDKAAPVIRP 136 +N VL + Sbjct: 115 GLLNAVLRRFQREEEA 130 >UniRef50_A8RCQ7 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RCQ7_9FIRM Length = 415 Score = 108 bits (272), Expect = 4e-23, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 45/130 (34%), Gaps = 5/130 (3%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 AR A L + + + L Q V D +++ G N + + Sbjct: 2 NARAYAFALLKEICIDEGYSNLLLRNKL--QSVDPKDKALVTQIVYGTLQNYRLVRYQWQ 59 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 Y+ + + +L +++Y+L +P I+EA+ + K VN VL Sbjct: 60 SYVKKEPC---KEVALLLDMSVYQLLYMDKMPAYAVIDEAVRITKKNIHPRFSALVNAVL 116 Query: 128 DKAAPVIRPN 137 + + Sbjct: 117 RQVERNGKRE 126 >UniRef50_UPI0001BC31DE NusB antitermination factor n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=UPI0001BC31DE Length = 142 Score = 108 bits (272), Expect = 5e-23, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 66/142 (46%), Gaps = 13/142 (9%) Query: 4 AARRRARECAVQALYSWQLSQNDI-----ADVEYQFLAEQDVKDV----DVLYFREL--- 51 R RE + L+ ++ ++ ++ D ++ D E+ Sbjct: 1 MNRTALRETVFKVLFRYEFHDSESFAGQMNLFFAEYPESGDEEENWPALDSKSAEEITGK 60 Query: 52 LAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIEL 110 + + + +D ++ ++ +G+ E +++RIA+YE+ ++ V+I+EA++L Sbjct: 61 VTDILCHIDEIDKVISEKSEGWDIDRIGKAELSIMRIAVYEILYDDNIENAVSISEAVKL 120 Query: 111 AKSFGAEDSHKFVNGVLDKAAP 132 AK +G E ++ FVNGVL K Sbjct: 121 AKKYGDEKAYGFVNGVLAKIVK 142 >UniRef50_C1TMF2 Transcription antitermination factor NusB n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TMF2_9BACT Length = 143 Score = 108 bits (272), Expect = 5e-23, Method: Composition-based stats. Identities = 44/145 (30%), Positives = 72/145 (49%), Gaps = 8/145 (5%) Query: 1 MKPA----ARRRARECAVQALYSWQLSQN-DIADVEYQFLAEQDVKDVDVLYFRELLAGV 55 MK + RARE A+Q LYS +++ D F E ++ R L+ GV Sbjct: 1 MKVGRGHYKKHRAREVALQLLYSMDVTKKHDAEKALNDFSFEDEIDVETG--VRALVLGV 58 Query: 56 ATNTAYLDGLMK-PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 + +D L+ + + + V++A +R+A+YE VP VAI+EA+EL K F Sbjct: 59 MDHLGEIDNLINVNVVGWRGDRMVAVDRAAIRLAVYEGLIARVVPVPVAISEAVELVKVF 118 Query: 115 GAEDSHKFVNGVLDKAAPVIRPNKK 139 G ++S +FVNG L + + + + Sbjct: 119 GTDESGRFVNGALARIVRAMPEDDE 143 >UniRef50_A8GMD2 N utilization substance protein B homolog n=15 Tax=Rickettsia RepID=NUSB_RICAH Length = 156 Score = 108 bits (272), Expect = 5e-23, Method: Composition-based stats. Identities = 38/150 (25%), Positives = 60/150 (40%), Gaps = 15/150 (10%) Query: 2 KPAARRRARECAVQALYS-WQLSQNDIADVEYQFLAEQDVKDVD------------VLYF 48 K + AR AVQA+Y + +D+ D+ L+ + +F Sbjct: 5 KINKKSIARIAAVQAIYQNILQNNDDMDDIMQNVLSFYRNDSSITNLTGNLKISLSISHF 64 Query: 49 RELLAGVATNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINE 106 + L+ V N LD ++ +L + + + +A+LR +YEL P KV INE Sbjct: 65 KILVKSVFENINKLDEIIDNHLTNDKDPAHMPILLRALLRAGIYELLFYPTTPAKVVINE 124 Query: 107 AIELAKSFGAEDSHKFVNGVLDKAAPVIRP 136 ++A FVN VLD A Sbjct: 125 YTDIANDMLNGYEIGFVNSVLDTIAKEKNK 154 >UniRef50_A8SZ12 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A8SZ12_9FIRM Length = 153 Score = 108 bits (271), Expect = 5e-23, Method: Composition-based stats. Identities = 34/149 (22%), Positives = 63/149 (42%), Gaps = 15/149 (10%) Query: 4 AARRRARECAVQALYSWQLS-QNDIADVEYQFLAEQ-------------DVKDVDVLYFR 49 RR R+ + +++ + + Q ++ + + V + D Y Sbjct: 1 MTRREIRDKIFKIVFTAEFNTQEEMKEQLELAFDTEMPGDEEDDPMLYASVSEKDKEYIT 60 Query: 50 ELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAI 108 + + + + +D + L +G+ E A+LR+ +YE+ +P KVAINEA+ Sbjct: 61 DKVMDILAHKDAIDNTISEISEGWKLPRIGKEELAILRLGVYEVVYDETIPEKVAINEAV 120 Query: 109 ELAKSFGAEDSHKFVNGVLDKAAPVIRPN 137 ELAK + + KFVN +L K Sbjct: 121 ELAKKYCDVSASKFVNALLAKLVKKEESG 149 >UniRef50_Q01T72 N utilization substance protein B homolog n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=NUSB_SOLUE Length = 146 Score = 108 bits (270), Expect = 7e-23, Method: Composition-based stats. Identities = 36/126 (28%), Positives = 63/126 (50%), Gaps = 4/126 (3%) Query: 14 VQALYSWQLSQNDIADVEYQFLA--EQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLS 71 +Q L+ W + + D + D K + +L+ G + A +D + + Sbjct: 12 LQILFIWDARKQPVEDAINAYYDTLYSDEKPERDPFVIDLVRGTVEHLAEVDDRITRHAE 71 Query: 72 RL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 +E + V++ +LR+A+YE++ R P V I+EA+ELA+ F E+S +FVNGVLD Sbjct: 72 HWRMERMPAVDRNILRLAVYEMT-RGGTPAPVTIDEALELARKFSNEESVQFVNGVLDAV 130 Query: 131 APVIRP 136 + Sbjct: 131 RREMPE 136 >UniRef50_Q1J0I4 N utilization substance protein B homolog n=3 Tax=Deinococcus RepID=NUSB_DEIGD Length = 169 Score = 108 bits (270), Expect = 7e-23, Method: Composition-based stats. Identities = 36/145 (24%), Positives = 68/145 (46%), Gaps = 10/145 (6%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAE--------QDVKDVDVLYFRELLAGV 55 RR ARE A + L+ + + + V + + + + + R+L+ G+ Sbjct: 13 GTRRAAREFAFRVLFEAERGKLPLETVFTRAEGDMREGDDTFAQLNAEALAFARQLVDGL 72 Query: 56 ATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 A +D ++ + E++ Q + VLR+A YE+ + P+ I A+ +A+ F Sbjct: 73 GERRADVDAALRRTIRGWDFEQMAQTDLNVLRLATYEMLYTPE-PHPPVIESAVRIARKF 131 Query: 115 GAEDSHKFVNGVLDKAAPVIRPNKK 139 G EDS +FVNGVL + ++ + Sbjct: 132 GGEDSGRFVNGVLGGLSRSLKTAPR 156 >UniRef50_Q0SP57 N utilization substance protein B homolog n=43 Tax=Borrelia RepID=NUSB_BORAP Length = 137 Score = 108 bits (270), Expect = 7e-23, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 72/136 (52%), Gaps = 6/136 (4%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQF-LAEQDVK---DVDVLYFRELLAGVATNTAYL 62 R A Q +YS ++Q+ + D+ F + ++ + + ++ L+ G N ++ Sbjct: 2 HEVRVLAFQKIYSIDINQSAMDDIFDIFNIEDKGLDIENESIKSFYSSLVNGTFNNLEHI 61 Query: 63 DGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRS-DVPYKVAINEAIELAKSFGAEDSH 120 D L++ L+ + +V+ A+LR+ +Y L ++ + + I++AI +AK +G+++S Sbjct: 62 DSLIRDISWNWSLDRMDKVDLAILRMGVYSLKFQNFENSKRAVIDDAILIAKKYGSKNSC 121 Query: 121 KFVNGVLDKAAPVIRP 136 KF+NG+LD + Sbjct: 122 KFINGILDALLKNMEN 137 >UniRef50_B5JST2 Ribosomal RNA small subunit methyltransferase B n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JST2_9GAMM Length = 431 Score = 108 bits (270), Expect = 8e-23, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 48/129 (37%), Gaps = 4/129 (3%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 AR+ A++A+ S Q ++ LA + D +EL G + L + Sbjct: 2 NARQQALRAITSVQQ-GQSLSAALPDLLA--PLPKRDRGLCQELSYGSLRYYHRYEWLSQ 58 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 L + + +AVL + LY+L +P A++ + L + +N VL Sbjct: 59 QLLKKPFKHKDSDLQAVLALGLYQL-FEMRIPDHAAVSNTVALVNGLKKSWAKGVINAVL 117 Query: 128 DKAAPVIRP 136 A Sbjct: 118 RNALRQRDE 126 >UniRef50_C3XHP1 Predicted protein n=1 Tax=Helicobacter bilis ATCC 43879 RepID=C3XHP1_9HELI Length = 368 Score = 108 bits (270), Expect = 8e-23, Method: Composition-based stats. Identities = 42/130 (32%), Positives = 71/130 (54%), Gaps = 2/130 (1%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 A R++ARE +Q LY+ +L + + FL Q +++ + LL G+ + Sbjct: 2 ATRKQAREAIIQILYAKELGNDKAIEQAEAFLNAQKIRNKQQDFALNLLHGICNEERKIA 61 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ +L L LG +EK ++++ +YEL +++ V INEAIEL KSF +D+ + Sbjct: 62 DIINVFLKSWDLSRLGVIEKNIIKLGVYELL-QTNTQKAVIINEAIELTKSFNVQDAFRL 120 Query: 123 VNGVLDKAAP 132 VNG+LD A Sbjct: 121 VNGILDSVAK 130 >UniRef50_Q18B61 N utilization substance protein B homolog n=6 Tax=Clostridiales RepID=NUSB_CLOD6 Length = 169 Score = 107 bits (269), Expect = 9e-23, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 74/167 (44%), Gaps = 34/167 (20%) Query: 1 MKP--AARRRARECAVQALYSWQLSQNDIADVEYQF------------------------ 34 MK A + RE ++ +Y +++ D +E + Sbjct: 2 MKKDRAQKSTTREYIMKLIYQININKEDFETLEDKVDNFLKDNSEHIINRYKELALQYSK 61 Query: 35 -----LAEQDVKDV-DVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRI 87 L + +++DV D Y + + N +D L+ + ++ + +V+ ++LR+ Sbjct: 62 NTNLKLEDTEIEDVIDKKYINTVCKALKENHDKIDELINKHAKNWTVDRMPKVDVSILRL 121 Query: 88 ALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVI 134 ++ E+ D P KV+INEA+ELAK + + S KF+NG+L I Sbjct: 122 SVCEILYL-DTPNKVSINEAVELAKIYCDDKSPKFINGILGSVVDEI 167 >UniRef50_C5C681 N utilization substance protein B homolog n=14 Tax=Actinomycetales RepID=NUSB_BEUC1 Length = 153 Score = 107 bits (269), Expect = 9e-23, Method: Composition-based stats. Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 9/128 (7%) Query: 14 VQALYSWQLS--------QNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 + LY D + + +A + Y E++ GVA + A +D L Sbjct: 12 LDLLYEADQKAVSGGAPASGDAVALLAERIATPHGEAPMREYTVEIVEGVAAHQARIDEL 71 Query: 66 MKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 ++ Y LE + V++A+LRI ++EL DVP VA++EA+ LA +DS FVN Sbjct: 72 LETYAQGWSLERMPAVDRAILRIGVWELLFNDDVPDAVAVDEAVALAAELSTDDSPTFVN 131 Query: 125 GVLDKAAP 132 G+L + Sbjct: 132 GLLGQLLR 139 >UniRef50_Q1MPZ7 TRNA and rRNA cytosine-C5-methylases n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MPZ7_LAWIP Length = 447 Score = 107 bits (269), Expect = 1e-22, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 50/139 (35%), Gaps = 5/139 (3%) Query: 2 KPAARRR---ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATN 58 K R++ ARE A AL I + L + D+ EL+ G Sbjct: 8 KYTNRKKTKTAREIATIAL-QKIKEGQPIQVLLNNILLTYPLSKQDIALVTELVYGYLRL 66 Query: 59 TAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 + +++ +L + E L K ++ +A YEL +P I+ A+ KS + Sbjct: 67 EIRIVWILEQFLKKS-EHLPYEVKLIIGLATYELLFLDKIPPYATIHTAVSTIKSKFGKI 125 Query: 119 SHKFVNGVLDKAAPVIRPN 137 N L + N Sbjct: 126 LAGVANASLQTIFRKSKHN 144 >UniRef50_Q2SSR7 RRNA methyltransferase RsmB (Sun protein), putative n=4 Tax=Mollicutes RepID=Q2SSR7_MYCCT Length = 428 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 58/129 (44%), Gaps = 4/129 (3%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 +R A L +++ + + ++++++ D + L+ GV +N +LD L+ Sbjct: 11 NSRSIAFDILKKVFVNKAYSNVLLNK-ISKKNLNQQDKDFVFNLVHGVISNKIHLDYLLA 69 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 + + + +L I+LY++ + +P +NE++ L K+ + F+N +L Sbjct: 70 KLIDVKKTSID--LQVILLISLYQMIYLNSIPNYAIVNESVNLIKTTS-QKQANFINAIL 126 Query: 128 DKAAPVIRP 136 +K Sbjct: 127 NKFLRFKDK 135 >UniRef50_A8I0J8 Antitermination protein n=1 Tax=Azorhizobium caulinodans ORS 571 RepID=A8I0J8_AZOC5 Length = 137 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 59/135 (43%), Gaps = 10/135 (7%) Query: 14 VQALYSWQLSQNDIADVEYQF--------LAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 +QALY ++ + ++ +F + + D FR ++ GV +D + Sbjct: 1 MQALYQMDIAGTPVNEILAEFETHWLGREVEGDVYPEADRALFRTVVEGVLAQQRTIDPM 60 Query: 66 MKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 + L+ L + V +A LR +EL + + P +V I E + +A +F + V Sbjct: 61 VDEALTAGWPLRRVELVMRATLRAGAFELIGKPETPARVVIAEYVNVAAAFFEREETGMV 120 Query: 124 NGVLDKAAPVIRPNK 138 N VLD A +R + Sbjct: 121 NAVLDSLARKLRAEE 135 >UniRef50_C8PI00 Transcription antitermination factor NusB n=1 Tax=Campylobacter gracilis RM3268 RepID=C8PI00_9PROT Length = 342 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 44/128 (34%), Positives = 67/128 (52%), Gaps = 5/128 (3%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 A R +AR A+ LYS ++ D ++L E+ +++ + LL G + N A +D Sbjct: 2 ATRHQARLAAISLLYSRDMNGGG-EDFADEYLEEKRIRNEQRNWTLALLRGASENLAAVD 60 Query: 64 GLMKPYLSR-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 L+ L L E+ +E+A+LR+ YEL +D + INEAI AK G S +F Sbjct: 61 ALIDENLKEFKLAEISALERAILRLGAYELRF-TDTDAGIVINEAINSAKELGI--SPRF 117 Query: 123 VNGVLDKA 130 +NGVLD Sbjct: 118 INGVLDAL 125 >UniRef50_Q2RTC4 N utilization substance protein B homolog n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=NUSB_RHORT Length = 185 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 43/157 (27%), Positives = 62/157 (39%), Gaps = 26/157 (16%) Query: 7 RRARECAVQALYSWQLSQ------------------------NDIADVEYQFLAEQDVKD 42 AR AVQALY L++ D + ++ Sbjct: 23 SAARLAAVQALYVLDLAEDARVDQVVLDFMSGSMGGMAIVEVADPEGIFDPTEEIAALEP 82 Query: 43 VDVLYFRELLAGVATNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPY 100 D F L+ G A LD ++ L + L V +AVLR +YEL +R P Sbjct: 83 PDGELFAMLVRGAHAELARLDEVIGASLSADWPWDRLEPVVRAVLRAGVYELLERQRTPP 142 Query: 101 KVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPN 137 +VAI E +++A +F + VN VLD+ A RP Sbjct: 143 RVAIKEYVDIAAAFYSGAEPGMVNAVLDRVARSARPE 179 >UniRef50_B1N082 Transcription termination factor n=3 Tax=Leuconostoc RepID=B1N082_LEUCK Length = 140 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 49/140 (35%), Positives = 75/140 (53%), Gaps = 9/140 (6%) Query: 1 MKPAARRRARECAVQALYSWQL--SQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATN 58 M R +R+ A Q L++ + N+I + L +D D Y L+ G+ N Sbjct: 1 MANLTRHESRQAAFQILFALEKDPQNNNIDRLYDIVLEGKDFDD----YLPRLVNGILGN 56 Query: 59 TAYLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 LD + +L+ + + + + +LR+A+YELS++ VPYKVAI+EA+ LAK+F Sbjct: 57 KIDLDAQISEHLAAGWAIARINKADLVILRLAIYELSQQL-VPYKVAIDEALILAKTFAD 115 Query: 117 EDSHKFVNGVLDKAAPVIRP 136 ED KFVNGVL AP + Sbjct: 116 EDDRKFVNGVLKNFAPKVEA 135 >UniRef50_Q72JL6 N utilization substance protein B homolog n=3 Tax=Thermus RepID=NUSB_THET2 Length = 151 Score = 106 bits (267), Expect = 1e-22, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 70/143 (48%), Gaps = 11/143 (7%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAE---------QDVKDVDVLYFRELLAGVA 56 RRRARE A++AL++ + + + L E + + V + R LL+G Sbjct: 2 RRRARELAMRALFAHTVGGMGLEEAFQHALEEMGGEEEGYAEPLDQEGVAFARRLLSGYK 61 Query: 57 TNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG 115 + +D +++ + ++ + + AVLR+A+YE+ P++ I A+++A +G Sbjct: 62 AHQEEVDRVLEETVEGWDFRQMAKTDLAVLRLAVYEMLYEP-TPFEPLIEVAVKIANRYG 120 Query: 116 AEDSHKFVNGVLDKAAPVIRPNK 138 E S FVNGVL + + + Sbjct: 121 GEHSGSFVNGVLARVYRRVAAGE 143 >UniRef50_A4E6J4 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E6J4_9ACTN Length = 466 Score = 106 bits (267), Expect = 2e-22, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 3/127 (2%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR+ A+ L DV + + + D + L GVA LD L+ Sbjct: 7 ARKLALDVLMEADRRGMYARDVLSSRASAKAIDQRDSAFAARLALGVAATQGILDELLDQ 66 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 +L + +++ + LRI+ +E+ P +VA+++ +EL +S GA+ + N VL Sbjct: 67 FLDKP-KKVAPRVRMALRISAFEMLYL-HTPGRVAVSQGVELVRS-GAKSAAGLANAVLH 123 Query: 129 KAAPVIR 135 K A + Sbjct: 124 KVADNVE 130 >UniRef50_C7LUK3 Sun protein n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LUK3_DESBD Length = 424 Score = 106 bits (267), Expect = 2e-22, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 2/118 (1%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR A+ L + D+ + L D EL G +D L+ Sbjct: 6 ARRLALDILRRTLDHKQDLQAAVDEVLNPVQ-AGPDKGLATELAYGYLRMRGRIDFLLSQ 64 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGV 126 L ++ + K +L +A+YEL S +P ++ A+ L + + K NGV Sbjct: 65 LLKNPVQT-SPIMKRILGVAMYELLFLSRIPDYATLDWAVTLVRERLDQTMGKVANGV 121 >UniRef50_Q4FPZ1 N utilization substance protein B homolog n=19 Tax=Moraxellaceae RepID=NUSB_PSYA2 Length = 375 Score = 106 bits (265), Expect = 3e-22, Method: Composition-based stats. Identities = 46/145 (31%), Positives = 74/145 (51%), Gaps = 13/145 (8%) Query: 7 RRARECAVQALYSWQLSQN-------------DIADVEYQFLAEQDVKDVDVLYFRELLA 53 R+AR A+Q LY W ++ D+ + A + V + Y+ E++ Sbjct: 52 RKARRFAMQGLYEWLVTDRRFDIDGKLGWKANAPHDIAARTRATNAMHTVHIGYYHEMMR 111 Query: 54 GVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKS 113 + L+ L+ L R + +L VE A+L I YEL R ++PYKV ++EA++L Sbjct: 112 DIPEQIDALNTLITQQLDREINKLDTVEHAILLIGAYELQNRLEIPYKVVLDEAMKLNNH 171 Query: 114 FGAEDSHKFVNGVLDKAAPVIRPNK 138 FGA D+HK +N VLD+ A +R + Sbjct: 172 FGATDAHKLINAVLDRMAVELRAPE 196 >UniRef50_D1BMJ1 NusB antitermination factor n=3 Tax=Veillonella RepID=D1BMJ1_VEIPT Length = 134 Score = 106 bits (265), Expect = 3e-22, Method: Composition-based stats. Identities = 45/130 (34%), Positives = 76/130 (58%), Gaps = 5/130 (3%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 RR AR+ A Q LY+ + D DV QF K +D Y ++ GV +N +D Sbjct: 6 NRREARQYAFQMLYANEF-HTDQNDV--QFPEGNIHKAMDKAYANSIIEGVLSNAEAIDA 62 Query: 65 LMKPYLS-RLLEELGQVEKAVLRIALYELSKRSD-VPYKVAINEAIELAKSFGAEDSHKF 122 ++P+ R + L +V++++LRIA++E++ + + + +AINEAI+LAK FG++ S+K Sbjct: 63 TLQPFCKSRKVANLDKVDRSILRIAVWEMNNKVEPLEPSIAINEAIQLAKEFGSDASYKL 122 Query: 123 VNGVLDKAAP 132 +N +LD Sbjct: 123 INAILDAYNK 132 >UniRef50_C5R7W5 Transcription antitermination protein NusB n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5R7W5_WEIPA Length = 139 Score = 106 bits (265), Expect = 3e-22, Method: Composition-based stats. Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 7/135 (5%) Query: 1 MKPAARRRARECAVQALYSWQLSQ-NDIADVEYQFLAEQDV---KDVDVLYFRELLAGVA 56 M R + R+ A Q+L+ L+ D+ Q L +D ++ GV Sbjct: 1 MTELNRHQIRQAAFQSLFGLALNPTADVDTTITQVLVGDPEIAWEDEIPADLTSVVLGVV 60 Query: 57 TNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 LD ++ +L L+ L + ++R+ALYE +DVP K+A+NEA++LA F Sbjct: 61 AKQDELDLMITDHLSSDWTLDRLNTTDLVLMRLALYEAKF-TDVPAKIAVNEALQLAHDF 119 Query: 115 GAEDSHKFVNGVLDK 129 + S KF+NG+L+K Sbjct: 120 TDDKSRKFINGILNK 134 >UniRef50_UPI0000E0DBE4 Putative Sun protein n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E0DBE4 Length = 442 Score = 106 bits (265), Expect = 3e-22, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 45/127 (35%), Gaps = 3/127 (2%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLM 66 ++ R A L+ Q L D + +E++ G L + Sbjct: 7 QQLRADAAWVLFQILEKGVSSKQALAQRLEHYQ--GRDRAWLQEMVFGCLRTLPTLQFWL 64 Query: 67 KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGV 126 + L + L+ ++ + ++ I LY+++ S V A++E + A +N + Sbjct: 65 RGLLDKPLKGRKKILEHLILIGLYQIAY-SRVSEHAAVSETVGAADLLKGTTLKALINAI 123 Query: 127 LDKAAPV 133 L Sbjct: 124 LRTFIRE 130 >UniRef50_B6BUY9 Transcription antitermination factor NusB n=1 Tax=beta proteobacterium KB13 RepID=B6BUY9_9PROT Length = 127 Score = 105 bits (264), Expect = 3e-22, Method: Composition-based stats. Identities = 42/125 (33%), Positives = 73/125 (58%) Query: 14 VQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL 73 ++++Y ++ D D++ L + D D ++ L+ G+ N + + ++ + Sbjct: 1 MKSIYRGIMNTFDYTDIKKDILEDPDYCRCDEEFYNSLIDGIKENYQEILEDLDNFMDKK 60 Query: 74 LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPV 133 EEL +E ++L +A YEL R D+P+KV+INEA+E+ KSFG ++S KFVNG LD+ A Sbjct: 61 KEELNPIELSILVVAYYELKTRVDIPFKVSINEALEITKSFGGQESFKFVNGSLDRVAKK 120 Query: 134 IRPNK 138 R + Sbjct: 121 YRALE 125 >UniRef50_C8WHT5 NusB/RsmB/TIM44 n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WHT5_EGGLE Length = 473 Score = 105 bits (264), Expect = 4e-22, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 6/132 (4%) Query: 3 PAARRRA---RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNT 59 R +A R A+ + + + DV + D+ D + +L GV + T Sbjct: 21 KKPRSKASPARLAALDVVRAVRERDAFAQDVIGTRIDRSDLSSEDRAFATKLALGVVSAT 80 Query: 60 AYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 LD ++ L ++ + LR++ YE+ P A+++ +EL +SF A + Sbjct: 81 GTLDEIIDRAL-NAPSDVKPDVRDALRVSTYEIIFLGKTP-HAAVDQGVELVRSF-AMSA 137 Query: 120 HKFVNGVLDKAA 131 N VL K Sbjct: 138 SGLANAVLRKIV 149 >UniRef50_C7H6X0 Transcription antitermination factor NusB n=3 Tax=Ruminococcaceae RepID=C7H6X0_9FIRM Length = 147 Score = 105 bits (263), Expect = 4e-22, Method: Composition-based stats. Identities = 41/130 (31%), Positives = 68/130 (52%), Gaps = 2/130 (1%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 RR ARE A +S + + + + VDV + + LL+ +++A +D Sbjct: 6 PRREARENAFLLAFSQTFGDVPLQEALDTNNECGEERPVDV-FGQRLLSAYYSHSAEVDD 64 Query: 65 LMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 L++ +L +E L +V VLR+AL E+ + V INEA+EL K +GA++ ++FV Sbjct: 65 LIRDHLRNWTMERLPRVSLTVLRLALAEMLYGDERKPGVVINEAVELTKKYGADEDYQFV 124 Query: 124 NGVLDKAAPV 133 NG+L A Sbjct: 125 NGLLGAVARE 134 >UniRef50_Q0BWV2 Putative ribosomal RNA small subunit methyltransferase B n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0BWV2_HYPNA Length = 423 Score = 105 bits (262), Expect = 6e-22, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 53/123 (43%), Gaps = 2/123 (1%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 R A + L + + D A ++ D + R + + + ++D + P Sbjct: 6 IRLAAGRLLNLVLDKKRTLDDALATDDAYNNLDGSDRAFARAIASSALRHLGWIDRGVSP 65 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS-HKFVNGVL 127 +LSR L G +A++R ++ DVP+ A++E +E A+ + S F+N L Sbjct: 66 FLSRPLSATGAEIRALIRAGAAQIWFM-DVPHHAAVSETVEAARLWSPARSGGGFLNAAL 124 Query: 128 DKA 130 + Sbjct: 125 RRV 127 >UniRef50_D0LCQ6 Transcription antitermination factor NusB n=3 Tax=Actinomycetales RepID=D0LCQ6_GORB4 Length = 163 Score = 105 bits (262), Expect = 6e-22, Method: Composition-based stats. Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 5/136 (3%) Query: 1 MK-PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKD---VDVLYFRELLAGVA 56 MK P R +AR AV L+ + Q A + + + Y ++ G+A Sbjct: 1 MKQPGTRHKARRRAVDILFEAEAKQVSPAQLVAERRELVRSDESVGAIHDYTARVIEGLA 60 Query: 57 TNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG 115 + +D ++ +L L L V++A+LR+A +EL DV V ++EA+ELAK Sbjct: 61 DDQEQIDSVISSHLREWTLPRLPAVDRAILRLATWELFNSVDVDTVVIVDEAVELAKELS 120 Query: 116 AEDSHKFVNGVLDKAA 131 +DS FVNGVL K A Sbjct: 121 TDDSPAFVNGVLAKIA 136 >UniRef50_C0W1L8 Putative uncharacterized protein n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0W1L8_9ACTO Length = 180 Score = 105 bits (262), Expect = 6e-22, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 61/139 (43%), Gaps = 6/139 (4%) Query: 4 AARRRARECAVQALYSWQLSQ-----NDIADVEYQFLAEQDVKDVDVLYFRELLAGVATN 58 ++R RAR+ A+ ++ I + + + Y E++ GV + Sbjct: 7 SSRTRARKRAIDTIFEADQRGRAESAAGINLMLEERKEITAAQTPLPEYSIEIIEGVRDH 66 Query: 59 TAYLDGLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 +D L+ + + R L V++A+LR+A +E+ VP AI+EA+ + + + Sbjct: 67 LIEIDDLLDTHTTGRTFSRLPAVDRAILRVATWEIIWNETVPDITAIDEAVRITRKISTD 126 Query: 118 DSHKFVNGVLDKAAPVIRP 136 DS VN +LD + Sbjct: 127 DSPALVNAILDAVRRDSKN 145 >UniRef50_C0QI57 RsmB n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QI57_DESAH Length = 455 Score = 105 bits (262), Expect = 6e-22, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 1/121 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAE-QDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 R A+ L + S+ + + ++ A+ + + D ++ G +LD L+ P Sbjct: 17 RFLALTILIENESSKFTLDKILERYSAQLESLAHRDRALANAIIYGTLRWKEHLDWLITP 76 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 + R L+++ LR ALY+ +P A+N A+ AK + FVN VL Sbjct: 77 FSKRPLDQIEPAICYTLRTALYQTVFMDKIPVSAAVNTAVNAAKKLSNTGAAGFVNAVLR 136 Query: 129 K 129 K Sbjct: 137 K 137 >UniRef50_C2BWJ7 Possible transcription antitermination protein NusB n=1 Tax=Mobiluncus curtisii ATCC 43063 RepID=C2BWJ7_9ACTO Length = 191 Score = 105 bits (262), Expect = 7e-22, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 5/134 (3%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIAD---VEYQFLAEQDVKD-VDVLYFRELLAGVAT 57 K R R R AV LY + D + Q ++ Y E+L GVA Sbjct: 4 KLPRRTRERVRAVDVLYEAHVRGWDTPEGIFSLSQLRQDETTAQTPLPAYAVEILEGVAE 63 Query: 58 NTAYLDGLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 + +D + Y L + +V+ A++R+A +E+ DV VAI A+++A+ Sbjct: 64 HLERIDAALATYSKAWPLHRMPEVDLAIMRVAAWEILFNPDVTGPVAITAAMQIAEERST 123 Query: 117 EDSHKFVNGVLDKA 130 ++S KF+NG+L Sbjct: 124 DESPKFINGLLGAI 137 >UniRef50_Q21DD2 Fmu (Sun) n=13 Tax=Rhizobiales RepID=Q21DD2_RHOPB Length = 450 Score = 104 bits (261), Expect = 8e-22, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 46/132 (34%), Gaps = 5/132 (3%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDV---KDVDVLYFRELLAGVATNTAYLDGL 65 AR A L + D A + D D R L+A + L + Sbjct: 17 ARRIAADILDGVLHKHRTLDDQLEGAAAHPGLKTLSDRDRALMRRLVATILRRLGTLGHV 76 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAK-SFGAEDSHKFVN 124 + L R L ++ L I ++ +VP A++ ++ L + A VN Sbjct: 77 LSRMLDRGLPTDAPRAQSALLIGAAQILWM-EVPDHAAVDLSVRLVQSDRRAAKYAGLVN 135 Query: 125 GVLDKAAPVIRP 136 VL + A +P Sbjct: 136 AVLRRCAREGQP 147 >UniRef50_UPI00016C434C transcription antitermination protein NusB n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C434C Length = 139 Score = 104 bits (261), Expect = 9e-22, Method: Composition-based stats. Identities = 45/131 (34%), Positives = 67/131 (51%), Gaps = 5/131 (3%) Query: 13 AVQALYSWQLSQND-IADVEYQFLAEQDVKDVDVL-YFRELLAGVATNTAYLDGLMKPYL 70 +Q L+ W + QF ++ + D ++ Y L GVA +D +K Sbjct: 2 VLQLLFQWDQNPTKVPRKAIQQFARDRLLGDAEMSTYALSLYDGVAGRKDAIDEALKSAA 61 Query: 71 SRL-LEELGQVEKAVLRIALYELSK-RSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 + L + V++ VLR+ +EL + P +V INEAIELAK FG+EDS FVNGVLD Sbjct: 62 TNWRLTRMTPVDRNVLRLGAFELLFDAAPQPLEVVINEAIELAKRFGSEDSPAFVNGVLD 121 Query: 129 KAAPVIRPNKK 139 + +R +K Sbjct: 122 RVGK-MRDERK 131 >UniRef50_Q2RN41 tRNA and rRNA cytosine-C5-methylase n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RN41_RHORT Length = 438 Score = 104 bits (260), Expect = 1e-21, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 3/118 (2%) Query: 14 VQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL 73 + L + + DV + ++ D + R L A L+ ++K +L R Sbjct: 13 LDLLSAVLDHGRPLDDVFDAA--TRKLEPRDRAFARLLAATTLRRMGRLEKVIKTFLDRP 70 Query: 74 LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAA 131 L K +LR+ ++ D P A+ ++++A+ +N VL K A Sbjct: 71 LPRRAVGAKHILRLGAAQMLFL-DTPPHAAVATSVDVARVRRLAPYAGLINAVLRKVA 127 >UniRef50_C4G0T0 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G0T0_ABIDE Length = 138 Score = 104 bits (260), Expect = 1e-21, Method: Composition-based stats. Identities = 35/137 (25%), Positives = 66/137 (48%), Gaps = 1/137 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 RR RE + ++ + +++ A+ D + + + A +D Sbjct: 1 MTRREFREHTAKLIFIFDFYPEAEWKEQFESYADYSEIKEDREGLWQRVMALEEKKAEVD 60 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 L+ + + L + + +LR+A+YE+ S++P KV++NEA+ELAK +G ++S F Sbjct: 61 SLIDGASKKWRISRLSKTDLMLLRVAVYEIKFDSEIPDKVSVNEAVELAKIYGGDESPAF 120 Query: 123 VNGVLDKAAPVIRPNKK 139 VNGVL K ++ Sbjct: 121 VNGVLAKFMSGEEAKEE 137 >UniRef50_C6JJK8 N utilization substance protein B n=2 Tax=Fusobacterium RepID=C6JJK8_FUSVA Length = 132 Score = 103 bits (258), Expect = 2e-21, Method: Composition-based stats. Identities = 39/131 (29%), Positives = 79/131 (60%), Gaps = 4/131 (3%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDV--KDVDVLYFRELLAGVATNTAY 61 +RR ARE + ++ ++ + + D+ +L +++ + ++ + ++ + G+A N Sbjct: 1 MSRRLAREELFKLVFEGEIKEENTKDILESYLNREEILQNENEIAFIKKYMNGIAENNDK 60 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 + +++ ++ E +G VEKA+L+I++YE+ D PY++ INEA+ELAK +G E + Sbjct: 61 ILKVIEEKITGWSFERIGNVEKALLKISVYEIL-CEDTPYEIVINEAVELAKIYGDEKTS 119 Query: 121 KFVNGVLDKAA 131 +F+NGVL K Sbjct: 120 EFLNGVLAKIV 130 >UniRef50_A7BC97 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BC97_9ACTO Length = 320 Score = 103 bits (258), Expect = 2e-21, Method: Composition-based stats. Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 7/140 (5%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIA-DVEYQFLAEQDVKDVDV----LYFRELLAGVA 56 + +R +AR+ A ++ +V L E+ V Y +++AGVA Sbjct: 6 RFTSRTKARKRAADVVFEADQRGMGRDPEVLRDLLRERRVITAAQTPLPEYSIQIIAGVA 65 Query: 57 TNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELS-KRSDVPYKVAINEAIELAKSF 114 + +D L++ + L+ + V+ AV+R+A++E+ DV VAI+EAI + +S Sbjct: 66 DSLRRIDDLIEAHARVPGLDRVAAVDLAVMRVAVWEMLANSDDVSPIVAIDEAISIVRSI 125 Query: 115 GAEDSHKFVNGVLDKAAPVI 134 + S +FVN VLD I Sbjct: 126 STDASPRFVNAVLDAIRKDI 145 >UniRef50_C6XIX5 NusB antitermination factor n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XIX5_HIRBI Length = 163 Score = 103 bits (258), Expect = 2e-21, Method: Composition-based stats. Identities = 35/144 (24%), Positives = 68/144 (47%), Gaps = 10/144 (6%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAE--------QDVKDVDVLYFRELLA 53 + +R AR AVQALY + + V + + + ++ D FR + Sbjct: 16 RKLSRSGARLAAVQALYQIEQTGRAGRAVIEDYCEDGIGLDDEGRPIEAADPEIFRNTVE 75 Query: 54 GVATNTAYLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELA 111 GV + ++ + L+ +E L +A+LR +YEL KR D+P ++ ++E + +A Sbjct: 76 GVIESLDDINLAIVKRLADGWKIERLDATSRAILRAGVYELMKRDDLPAQIILDEYVSIA 135 Query: 112 KSFGAEDSHKFVNGVLDKAAPVIR 135 +F + +F+N +L+ +R Sbjct: 136 HAFFDDAEPRFINALLENVREDVR 159 >UniRef50_A1TWM9 Sun protein n=3 Tax=Marinobacter RepID=A1TWM9_MARAV Length = 433 Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 45/130 (34%), Gaps = 4/130 (3%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R A L + + ++ L + + + G L+G + Sbjct: 9 RAIAANVLLAVEQ-GQSLSQCLPPAL--NQLPPEQRPQLQAICYGTCRWFHRLEGELNQR 65 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 L + L + ++ ++ +AL++L +NE +E ++ VNGVL Sbjct: 66 LKKPLRKPDRIIHHLMLVALFQLRYSEQ-ATYAVLNETVEACRALDKPHLTGLVNGVLRA 124 Query: 130 AAPVIRPNKK 139 A P K Sbjct: 125 AEREGAPEPK 134 >UniRef50_B7S425 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7S425_PHATR Length = 413 Score = 103 bits (257), Expect = 3e-21, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 49/136 (36%), Gaps = 8/136 (5%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLM 66 R AR A +AL + S D + D + R L+ +D ++ Sbjct: 75 RNARFLAARALITKTGSAAFAVDRLESNKHYSTLSTRDRSFARLLVTTTERRLGQIDEVL 134 Query: 67 KPY---LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELA----KSFGAEDS 119 + + Q +A LRI +L VP A+ E +EL K+ E Sbjct: 135 RQCQKETKSRPNRVDQFVQAALRIGATQLLFL-KVPEHAAVKETVELLRHDPKTTVPESR 193 Query: 120 HKFVNGVLDKAAPVIR 135 KFVN VL + + Sbjct: 194 IKFVNAVLRRISREGD 209 >UniRef50_UPI0001BC2C20 NusB antitermination factor n=1 Tax=Brevibacterium linens BL2 RepID=UPI0001BC2C20 Length = 121 Score = 102 bits (256), Expect = 3e-21, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 1/112 (0%) Query: 21 QLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQ 79 + Q + + + D Y E++ G+ ++ +D ++ Y LE + Sbjct: 3 EAGQRRLDTEQIVTMRSNDPDYPMKAYAVEIVEGITSHREEIDEIIATYAEGWTLERMPA 62 Query: 80 VEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAA 131 V+ A+L+I +E+ +VP K AI+EA+ LA+ F +DS F++G+L + Sbjct: 63 VDLALLQIGTWEIIFNDEVPDKAAIDEAVSLARQFSTDDSPGFISGLLSRVL 114 >UniRef50_Q8NQ33 N utilization substance protein B homolog n=5 Tax=Corynebacterium RepID=NUSB_CORGL Length = 227 Score = 102 bits (256), Expect = 3e-21, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 6/140 (4%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQ----FLAEQDVKDVDVLYFRELLAGVAT 57 + +R +AR AV L+ + D + + Y ++ GVA Sbjct: 10 RHGSRYKARMRAVDILFEAESRDVDPVAIIDDRHKLARDTNPIVAPVAEYTETIINGVAV 69 Query: 58 NTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG 115 LD + ++ + L L V++A+LR+A +E+ +DVP AI EA+E+A + Sbjct: 70 ELDTLDVFLAEHIAETWTLGRLPSVDRAILRVASWEMIYNADVPVTTAIVEAVEIASEYS 129 Query: 116 AEDSHKFVNGVLDKAAPVIR 135 + S ++N LD A + Sbjct: 130 GDKSSAYINATLDAMASKVE 149 >UniRef50_B6JAF7 SUN protein n=6 Tax=Alphaproteobacteria RepID=B6JAF7_OLICO Length = 446 Score = 102 bits (256), Expect = 3e-21, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 48/130 (36%), Gaps = 5/130 (3%) Query: 9 ARECAVQALYSWQLSQNDIADVEY---QFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 AR A + + + D Q A + + D D R L+A V L L Sbjct: 17 ARRIAADIIDGVLHKRRTLDDQLEGAAQHPALKSLSDRDRALMRRLVATVLRRRGTLAYL 76 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKS-FGAEDSHKFVN 124 + L R + ++ L I ++ DVP A++ ++ L ++ A VN Sbjct: 77 LSRLLDRGVPSDAPRAQSALMIGAAQILWM-DVPDHAAVDLSVRLVQADRRAAKYAGLVN 135 Query: 125 GVLDKAAPVI 134 VL + A Sbjct: 136 AVLRRCAREG 145 >UniRef50_D1B5H9 NusB antitermination factor n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B5H9_THEAS Length = 148 Score = 102 bits (256), Expect = 3e-21, Method: Composition-based stats. Identities = 46/135 (34%), Positives = 69/135 (51%), Gaps = 3/135 (2%) Query: 3 PAARRRARECAVQALYSWQLSQN-DIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 P RRRARE A+Q Y + Q I +V L + Y L +G+ Sbjct: 6 PKKRRRARELALQLGYLMDMRQELGINEVLGS-LPLDEEDPEVRDYAVALTSGLYRERQR 64 Query: 62 LDGLM-KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 L+G++ + + E + V++ +R+A+ E VP+ VAI+EA+ELAK FG EDS Sbjct: 65 LEGILRERLVGWRPERMVAVDRVAIRLAILEGYLERLVPFPVAISEAVELAKLFGTEDSG 124 Query: 121 KFVNGVLDKAAPVIR 135 +FVNGVL + + Sbjct: 125 RFVNGVLGRIFKDLE 139 >UniRef50_A0Z2Z6 Sun protein n=2 Tax=unclassified Gammaproteobacteria (miscellaneous) RepID=A0Z2Z6_9GAMM Length = 438 Score = 102 bits (256), Expect = 3e-21, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 42/116 (36%), Gaps = 3/116 (2%) Query: 23 SQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEK 82 + + + L + + +EL+ G L+G+ L + Sbjct: 20 NGESLVRALPKGLE--PLSLENRPLVQELVYGTLREWPRLEGIALQLLRKPPRAKDADVL 77 Query: 83 AVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 ++ +++LS +VP A+ E +E AKS G + +NG L + Sbjct: 78 CLILTGIHQLSGL-NVPSHAAVGETVEAAKSLGKSWAAGLINGCLRNYQRQKGALE 132 >UniRef50_A7IBA4 Sun protein n=6 Tax=Rhizobiales RepID=A7IBA4_XANP2 Length = 471 Score = 102 bits (256), Expect = 3e-21, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 43/129 (33%), Gaps = 5/129 (3%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR AV L + D A+ + D +LA L L+ Sbjct: 47 ARILAVDGLEQVLRHGAALEDALD---ADVALDPRDRALAYRILATSLRRIGTLRALIAK 103 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKS-FGAEDSHKFVNGVL 127 + R L + ++VL ++ DVP A+ +++A++ VN VL Sbjct: 104 LMERGLPKSAPRLESVLLAGATQILFM-DVPNHAAVGLCVDVARADRNTAGFAGLVNAVL 162 Query: 128 DKAAPVIRP 136 + Sbjct: 163 RRLTREADA 171 >UniRef50_C4GAK6 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GAK6_9FIRM Length = 152 Score = 102 bits (256), Expect = 3e-21, Method: Composition-based stats. Identities = 41/150 (27%), Positives = 67/150 (44%), Gaps = 21/150 (14%) Query: 2 KPAARRRARECAVQALYSWQLSQND-IADVEYQFLAEQDV-------KDVDVLYFREL-- 51 K RR+ RE A + L+ D + D + + ++ D L Sbjct: 4 KTMIRRQIRETAFRILFVLNFCPADQMQDQLNLYFTDHTELEIDDLTEEEDQKAVIRLDQ 63 Query: 52 ---------LAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYK 101 G A + +D +++ L L +V+ +LR+A+YE+ ++P Sbjct: 64 ASWPEITAKCLGAAGHLPEIDRIIEESSEGWKLSRLTKVDLTLLRLAVYEMKF-ENLPSG 122 Query: 102 VAINEAIELAKSFGAEDSHKFVNGVLDKAA 131 +AINEA+ELAK +G + S FVNGVL K + Sbjct: 123 IAINEAVELAKRYGTDKSPAFVNGVLAKIS 152 >UniRef50_D0BJY7 Transcription antitermination factor NusB n=2 Tax=Granulicatella RepID=D0BJY7_9LACT Length = 154 Score = 102 bits (255), Expect = 4e-21, Method: Composition-based stats. Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 19/149 (12%) Query: 3 PAARRRARECAVQALYSWQLSQNDIA-----DVEYQFLAEQDVKDV------------DV 45 P RR R A+QALY + ++ EQ + ++ Sbjct: 5 PLKRRALRIIAIQALYQMDICKDLSEFDAVRLALDVLHDEQSFDEEVYSNEALLDEFPEI 64 Query: 46 LYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSK-RSDVPYKVA 103 Y +L+ GV +D L+ +L L + +++ ++R+A+ E+ +VP VA Sbjct: 65 HYSLDLIQGVQNQLEEIDALISSHLKGWELNRIVRLDLMIMRVAVCEMRSPELEVPQTVA 124 Query: 104 INEAIELAKSFGAEDSHKFVNGVLDKAAP 132 +NEAIE+AK + E S KF+NGVL Sbjct: 125 LNEAIEIAKLYSDEKSAKFINGVLSNFVE 153 >UniRef50_C7RHU9 NusB antitermination factor n=2 Tax=Anaerococcus RepID=C7RHU9_ANAPD Length = 127 Score = 102 bits (255), Expect = 4e-21, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 62/130 (47%), Gaps = 6/130 (4%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 R RE + +Y + I+ +E A +++ D + R+ ++ N + +D Sbjct: 1 MNRVEQREWVFKLIYQ-----DSISKIEDIDKALEELDLTDEDFVRKSISSFLNNFSSID 55 Query: 64 GLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 + L + L +V +++L +++ E+ D+P V+INEA+ LAK + ED +K V Sbjct: 56 EKLTSNLDSKRKRLSKVLRSILYLSINEMYFM-DIPVSVSINEAVNLAKKYSDEDDYKLV 114 Query: 124 NGVLDKAAPV 133 N +L Sbjct: 115 NSILGSIVRK 124 >UniRef50_A4CML6 NusB family protein n=2 Tax=Flavobacteria RepID=A4CML6_9FLAO Length = 366 Score = 101 bits (254), Expect = 5e-21, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 5/118 (4%) Query: 23 SQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVE 81 + + L D+ + +LL A L+ ++ E + +++ Sbjct: 244 QGAPESYLLPALLK----NSEDMEFAMDLLRKTLNKNAALEAEIEGKTPNWDKERIAEID 299 Query: 82 KAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 +L++ + EL +P +V INE +E+AK + S F+NG+LDK R + Sbjct: 300 GILLKMGIAELLYFPSIPERVTINEYLEIAKEYSTPKSSIFINGILDKLIREYREAGR 357 >UniRef50_C2KZE7 Putative uncharacterized protein n=1 Tax=Oribacterium sinus F0268 RepID=C2KZE7_9FIRM Length = 185 Score = 101 bits (254), Expect = 5e-21, Method: Composition-based stats. Identities = 34/143 (23%), Positives = 58/143 (40%), Gaps = 16/143 (11%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVD---------------VLYF 48 +R R+ + L+S + + + +D D + Sbjct: 1 MNKREERDHKFKLLFSTLFYPEEGKQEQLSHYSYSKEEDEDFLLPEKEEEHLSEEEEAFL 60 Query: 49 RELLAGVATNTAYLDGLMKPYLSRLL-EELGQVEKAVLRIALYELSKRSDVPYKVAINEA 107 + + + +LD + + + + VLR+ALYEL + + P KV NEA Sbjct: 61 SQEVMKILERLPHLDERINAVTEGWTTSRMSKTDLTVLRLALYELEYQEETPDKVVFNEA 120 Query: 108 IELAKSFGAEDSHKFVNGVLDKA 130 +E+AK +G DS FVNGVL + Sbjct: 121 VEIAKKYGGADSGSFVNGVLARI 143 >UniRef50_C7MNL0 tRNA/rRNA cytosine-C5-methylase n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MNL0_CRYCD Length = 500 Score = 101 bits (253), Expect = 6e-21, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 3/122 (2%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR AV+ + + +D+ L + + D + R L+ GV LD ++ Sbjct: 7 ARRLAVEIGRDARERKAFASDLLDARLGKSGLNAADRAFTRVLVLGVVATVGTLDEVIGR 66 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 L R + +G + LR++ YE+ + VA+++ +ELA +F + + N VL Sbjct: 67 CLDRAGD-VGLQLRDALRVSTYEIIFLNK-DAYVAVDQGVELA-AFVQPRARRLANAVLR 123 Query: 129 KA 130 + Sbjct: 124 RI 125 >UniRef50_D1R8R5 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R8R5_9CHLA Length = 417 Score = 101 bits (253), Expect = 6e-21, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 53/122 (43%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 ARE A A+YS+ +++ + ++ +D + +++ G LD + K Sbjct: 6 AREAAFLAVYSFLKEGKFLSESLENWKQKESPSSLDFSFAQDIAYGSVRMALALDYIAKS 65 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 R L E+++LR A+Y+ + + P E+ LAK + F+N +L Sbjct: 66 TAERQSLSLKVKERSLLRTAIYQAAFQRSTPLYAIGQESGNLAKKYCHPTFSSFLNALLR 125 Query: 129 KA 130 K Sbjct: 126 KL 127 >UniRef50_A3MAA2 16S rRNA m5C967 SAM-dependent methyltransferase n=18 Tax=Acinetobacter RepID=A3MAA2_ACIBT Length = 434 Score = 101 bits (253), Expect = 7e-21, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 53/136 (38%), Gaps = 6/136 (4%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 ++R R VQ L Q +A + L V + D F EL+ G L Sbjct: 8 SSRFNLRAQVVQTLLKVQQ-GQSLASILNTQL--NQVAERDRALFHELVLGTLRQWFALK 64 Query: 64 GLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 + P LS+ L + + L + LY++ + + AI+E ++ K G V Sbjct: 65 SISLPLLSKPLNN--ETVETCLYVGLYQVL-CTRIAAHAAISETVDATKQLGFPALSGIV 121 Query: 124 NGVLDKAAPVIRPNKK 139 N +L +A ++ Sbjct: 122 NAILRRATRETEDFEQ 137 >UniRef50_B8J1H7 NusB/RsmB/TIM44 n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8J1H7_DESDA Length = 526 Score = 101 bits (252), Expect = 8e-21, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 47/151 (31%), Gaps = 24/151 (15%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQ----------------------DVKDVDV 45 R A++AL L + D Sbjct: 15 NGRTAALRALLLVD-DGLSAQQALASVLDAPVAHGASGNSREKSHTANAGRCQGLSAQDR 73 Query: 46 LYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAIN 105 EL+ G L+ L+ L R + L + + +L +A+Y L + VP + Sbjct: 74 ALCTELVYGCLRTELRLNFLLGRVLPRP-QGLPRPMQILLALAVYGLLFQDKVPSHAVVY 132 Query: 106 EAIELAKSFGAEDSHKFVNGVLDKAAPVIRP 136 EA+E A++ + + NG L + Sbjct: 133 EAVEQARALFGQGLARVANGALRSLQRMGEE 163 >UniRef50_C1SH03 Transcription antitermination factor NusB n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SH03_9BACT Length = 147 Score = 101 bits (252), Expect = 8e-21, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 67/143 (46%), Gaps = 6/143 (4%) Query: 1 MKPA--ARRRARECAVQALYSWQLSQNDIADVEYQFLAE-QDVKDVDVLYFRELLAGVAT 57 MK AR R R+ A +Y ++ ++ F ++ + + + L G A Sbjct: 1 MKKNFKARTRGRKFAYMMMYQLIIADYTPKEITKTFWNSVKEEDESVIEFANRLFTGAAE 60 Query: 58 NTAYLDGLMKPY--LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG 115 + D ++ Y E +G+VEK +LR+A++EL R + PY IN+ + LA+ + Sbjct: 61 SVDANDEIICRYIRSDWTYERMGEVEKDILRVAVHEL-FRQEAPYYAVINDFVTLARKYS 119 Query: 116 AEDSHKFVNGVLDKAAPVIRPNK 138 E S VNG+L+ + ++ Sbjct: 120 DEKSASLVNGILENIRKNFKLSE 142 >UniRef50_C6W6R3 NusB antitermination factor n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W6R3_DYAFD Length = 388 Score = 101 bits (252), Expect = 8e-21, Method: Composition-based stats. Identities = 37/131 (28%), Positives = 55/131 (41%), Gaps = 7/131 (5%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 R A++ L + + + E D + EL V + D ++ Sbjct: 251 IRSLAIKTLRTADDAHTFQLAPLTKDWEE------DRAFVEELCKIVIRESDQYDVYLED 304 Query: 69 YLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 L LE + V+ +L+ AL EL +P KV INE IE+AK + S KFVNGVL Sbjct: 305 QLKNWELERIALVDLIILKTALAELIHFPGIPVKVTINEFIEIAKRYSTPKSGKFVNGVL 364 Query: 128 DKAAPVIRPNK 138 D + + Sbjct: 365 DVLSVKLAKEG 375 >UniRef50_UPI0001BC6038 transcription antitermination protein NusB n=3 Tax=Fusobacterium RepID=UPI0001BC6038 Length = 138 Score = 101 bits (252), Expect = 9e-21, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 68/136 (50%), Gaps = 5/136 (3%) Query: 1 MK-PAARRRARECAVQALYSWQLSQNDIADVEYQ--FLAEQDVKDVDVLYFRELLAGVAT 57 M+ RR ARE + ++ ++ N + E + +V L+ G+A Sbjct: 1 MREKMTRREAREELFKWIFQTEIQGNSMEKAFEYSSLREEIEKDEVTKLFLERYRKGLAE 60 Query: 58 NTAYLDGLM-KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 + ++ + +G VEK++L++A+YE+ D+P ++ +NEA+E+AK +G Sbjct: 61 HREEIETKIQAAMTDWDFSRIGYVEKSLLKLAVYEM-YFEDLPVEIIVNEAVEIAKIYGD 119 Query: 117 EDSHKFVNGVLDKAAP 132 +H+F+NGVL K Sbjct: 120 VKTHEFINGVLAKVIK 135 >UniRef50_A1AVP0 Sun protein n=1 Tax=Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica) RepID=A1AVP0_RUTMC Length = 421 Score = 101 bits (252), Expect = 1e-20, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 48/126 (38%), Gaps = 8/126 (6%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R A++A+YS +++ ++ KD D + L+ G L+ ++ Sbjct: 7 RFIALEAIYSVIINKKSLSAF-------NYPKDNDTPLIKSLVFGTIRFYHQLNDIVSKR 59 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 L ++ ++ + Y+L S + +I E + + + + VN +L K Sbjct: 60 LKHSFKKEDLDVHCLMLLGAYQLLY-SKIAIHASIFETVNVVNALNKPWAKALVNAILRK 118 Query: 130 AAPVIR 135 + Sbjct: 119 IDRDKK 124 >UniRef50_A8PKU4 Ribosomal RNA small subunit methyltransferase B n=1 Tax=Rickettsiella grylli RepID=A8PKU4_9COXI Length = 442 Score = 100 bits (251), Expect = 1e-20, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 47/128 (36%), Gaps = 2/128 (1%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLM 66 R A + + + + + + + + D + +EL GV L L Sbjct: 2 SNTRRIAAHIISRFLKKKIALNTILFAEVP-SGIDVRDRAFIQELCYGVIRWYFPLKKLS 60 Query: 67 KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGV 126 L + L Q A++ + LY+L+ ++ A+ E ++ AK + +NGV Sbjct: 61 SFLLKKSLNRSDQDIYALVLVGLYQLNYL-NISPHAAVYETVQAAKELRKRWAAPLINGV 119 Query: 127 LDKAAPVI 134 L Sbjct: 120 LRSFQRQK 127 >UniRef50_Q044I1 Transcription termination factor n=18 Tax=Lactobacillus RepID=Q044I1_LACGA Length = 133 Score = 100 bits (251), Expect = 1e-20, Method: Composition-based stats. Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 4/133 (3%) Query: 4 AARRRARECAVQALYSWQLSQ-NDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 + R A+QA+Y + +V + L ++K Y E++ GV N L Sbjct: 1 MTQHEMRRIAMQAIYLANQGNLTNAEEVCQKALKALELKSF-PDYSTEIVNGVLANKKAL 59 Query: 63 DGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 D + YL L + +++ A+L +ALYE+ + A+NEA+ L F +++S Sbjct: 60 DEQLSKYLKKGWRLNRINEIDLAILEVALYEMQNSKVIEPVAALNEALNLCDEFSSKESK 119 Query: 121 KFVNGVLDKAAPV 133 KFVNG+L Sbjct: 120 KFVNGLLANFIKK 132 >UniRef50_B7CB38 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CB38_9FIRM Length = 397 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 38/122 (31%), Gaps = 6/122 (4%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 R+ +AL L +V + D + G N Y Sbjct: 1 MRKWIWKALDEVVNKDVYSNLYLRNHL--HEVDEKDRALATRIFYGTIQNYRYCKACWSK 58 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 Y+ L +L ++ Y+L VP +N+A+ +AK N VL Sbjct: 59 YVKNK---LNPKMDVLLTMSTYQLLFLDKVPSYAIVNDAVNIAKKI-NMKYAGLTNAVLH 114 Query: 129 KA 130 K Sbjct: 115 KV 116 >UniRef50_C3WZH3 Transcription antitermination protein NusB n=4 Tax=Fusobacterium RepID=C3WZH3_9FUSO Length = 157 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 63/140 (45%), Gaps = 10/140 (7%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAE--------QDVKDVDVLYFRELLAGVATN 58 R ARE + ++ +L+ + +++ F + + + + + + G+ N Sbjct: 17 RLAREEVFKLVFGAELTGSSSDELKQDFSIYLQNDEEFINALSEKQLEFIKNSINGIVEN 76 Query: 59 TAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 + ++K E +G +E+++L + YE + P +V NE +ELAK +G E Sbjct: 77 YDNIKDVIKKNTQNWTYERIGVIERSLLIVGTYEFL-IKNTPIEVIANEIVELAKEYGNE 135 Query: 118 DSHKFVNGVLDKAAPVIRPN 137 S++F+NG+L Sbjct: 136 KSYEFINGILANIEKAKNKG 155 >UniRef50_C6I119 Transcription antitermination factor (NusB) n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6I119_9BACT Length = 180 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 35/142 (24%), Positives = 69/142 (48%), Gaps = 6/142 (4%) Query: 3 PAARRRA----RECAVQALYSWQ-LSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVAT 57 P++RRRA R +Q L++ + S+ + + + + Y L A + Sbjct: 9 PSSRRRALSAARGKVLQRLFAEEYESRPSPDPLLKDLIGWEGEDPMANAYADRLYAEILF 68 Query: 58 NTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 +D +++ L L +V++ +LRI L E+ +P++V+++EA++LA F Sbjct: 69 RKPEIDAVIEELARGWSLPRLTRVDRNILRIGLCEILFDPAMPFRVSVHEALDLAHRFSD 128 Query: 117 EDSHKFVNGVLDKAAPVIRPNK 138 ++ F+NG+L +A P K Sbjct: 129 PEAVSFLNGILHEAGVRHAPEK 150 >UniRef50_B5YIL4 Sun protein n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YIL4_THEYD Length = 441 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 5/129 (3%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R+ AV+ L + ++ + + + D + E++ GV N Y+D L++ + Sbjct: 7 RKVAVEVLNNVVGTKKPLKFALTENI-LSMFDKADRAFLLEVIYGVLRNLYYIDWLLEDF 65 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 E+L LR A+Y+L +P NE + + KSF + VN +L Sbjct: 66 YKSR-EKLSMYTINNLRCAIYQLVFM-HIPAYAVANETVNVEKSFNGK--PNVVNAILRN 121 Query: 130 AAPVIRPNK 138 + ++ Sbjct: 122 FLRKYQADE 130 >UniRef50_D2QU07 NusB antitermination factor n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QU07_9SPHI Length = 378 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 7/131 (5%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R A++ L S Q + + E ++ + L N A + L+ Sbjct: 242 RGLAIRTLKSVQSATGLQLEPLTDDWEEDEL------FLNTLFEKSIENDADYEQLLADQ 295 Query: 70 LSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 L +E + ++K +L++A+ EL ++P KV INE IELAK++ S KFVNG+LD Sbjct: 296 LKNWDVERVAMIDKIILKLAVCELLSFPNIPVKVTINEYIELAKAYSTPKSGKFVNGILD 355 Query: 129 KAAPVIRPNKK 139 + + + + Sbjct: 356 NLSEKLLASGR 366 >UniRef50_C9L054 NusB family protein n=34 Tax=Bacteroidales RepID=C9L054_9BACE Length = 308 Score = 99.7 bits (248), Expect = 2e-20, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 55/129 (42%), Gaps = 6/129 (4%) Query: 12 CAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLS 71 ++ + + + ++ +F D D + R L N+ Y L+ Sbjct: 181 FVLKTIKRFDEKKGANQELLPEFK-----DDEDQEFARRLFRRTILNSDYYRHLISENTK 235 Query: 72 RL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 L+ + ++ +++ AL E+ ++P V++NE +E+AK + S F+NG LD Sbjct: 236 NWDLDRIAFMDIIIMQTALAEILSFPNIPVSVSLNEYVEIAKLYSTSKSGSFINGTLDGI 295 Query: 131 APVIRPNKK 139 ++ K Sbjct: 296 VNQLKKEGK 304 >UniRef50_UPI0001C31BDA sun protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31BDA Length = 444 Score = 99.7 bits (248), Expect = 2e-20, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 48/126 (38%), Gaps = 1/126 (0%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR+ A L + + D + L G LD +++ Sbjct: 11 ARQVAAAVLRRVESDGAYADRALAGEARRAGLDARDHAFAMALAFGAVQRRRTLDHVIER 70 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 R + +L + LR+ L +L V A+++++ELAK+ G +K VN VL Sbjct: 71 LARRPVGQLDPPVRDALRLGLLQLLFLGGVAPHAAVDQSVELAKAAGGPG-YKLVNAVLR 129 Query: 129 KAAPVI 134 + A Sbjct: 130 RGAREG 135 >UniRef50_Q607V0 N utilization substance protein B homolog n=1 Tax=Methylococcus capsulatus RepID=NUSB_METCA Length = 198 Score = 99.7 bits (248), Expect = 3e-20, Method: Composition-based stats. Identities = 51/111 (45%), Positives = 70/111 (63%) Query: 28 ADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRI 87 Q ++ V DV V YF+ELL GVA N A LD + YL R ++E+ VE+A+LRI Sbjct: 81 DVTLEQRASQCQVPDVQVGYFKELLHGVANNLALLDAALAKYLDRPIDEVDPVERAILRI 140 Query: 88 ALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 YE +R + PY+V +NEAI LAK FGA S+++VNG+LD+ A R + Sbjct: 141 GCYEFMRRPETPYRVILNEAINLAKEFGAAQSYRYVNGILDRVAHECRAVE 191 Score = 38.0 bits (88), Expect = 0.098, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 25/38 (65%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKD 42 AR AR AVQA+Y WQL+++ + D+E QF+ E + Sbjct: 4 ARTLARRAAVQAVYQWQLARDSLPDIERQFVEELQLAK 41 >UniRef50_A1B2A9 NusB antitermination factor n=43 Tax=Rhodobacterales RepID=A1B2A9_PARDP Length = 166 Score = 99.7 bits (248), Expect = 3e-20, Method: Composition-based stats. Identities = 40/138 (28%), Positives = 61/138 (44%), Gaps = 14/138 (10%) Query: 13 AVQALYSWQLSQNDIADVEYQFL------AEQDVK----DVDVLYFRELLAGVATNTAYL 62 AVQAL+ + + V+ +FL ++D + D F ++ T + + Sbjct: 28 AVQALFQMEAAGQSADRVQREFLNWRIGREDEDDDIVSAEADQALFTRIVDDAVTWQSKI 87 Query: 63 DGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE-DS 119 D + L ++ + V ++V R A EL P KV I E + LA++F AE Sbjct: 88 DQMTDRALVAKWPIDRIDPVLRSVFRAAGAELV-TPKTPPKVVITEYVRLAQTFFAEGRE 146 Query: 120 HKFVNGVLDKAAPVIRPN 137 KFVN VLD A RP Sbjct: 147 SKFVNAVLDHMAREARPE 164 >UniRef50_D1KD39 Ribosomal RNA small subunit methyltransferase B n=1 Tax=uncultured SUP05 cluster bacterium RepID=D1KD39_9GAMM Length = 423 Score = 99.7 bits (248), Expect = 3e-20, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 47/136 (34%), Gaps = 9/136 (6%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 M+ + R A+ A+ S L + ++ D D + L+ G Sbjct: 1 MQNTNKSNTRAVALDAICSVVLDKRSLSSFV--------YPDQDDALAKSLVFGTIRFYH 52 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 L+ ++ L+ LE+ ++ + Y++ S V +I E ++ + Sbjct: 53 QLNDIVTDLLNHSLEKEDLDIHCLMLLGAYQILY-SKVAIHASIFETVDTLNFLDKTWAK 111 Query: 121 KFVNGVLDKAAPVIRP 136 VN +L + Sbjct: 112 GLVNAILRQIDRDKDS 127 >UniRef50_C2BPE4 Transcription antitermination protein NusB n=2 Tax=Corynebacterium RepID=C2BPE4_9CORY Length = 221 Score = 99.3 bits (247), Expect = 3e-20, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 54/129 (41%), Gaps = 6/129 (4%) Query: 15 QALYSWQLSQNDIADVEYQFLAEQDVK----DVDVLYFRELLAGVATNTAYLDGLMKPYL 70 LY + D + +A Y + ++ GVA +D + +L Sbjct: 27 DILYEAENRDVDPVAIVEDRIALAREDRNAVAPVAEYTQVIVKGVAEELDAIDDTISRFL 86 Query: 71 --SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 L + V++A+LR++++EL D+P A+ E +E+A + + + +++ VLD Sbjct: 87 AEDWELHRIPAVDRAILRLSVWELLFNPDIPTATAVVEGVEIASQYSNDQAAPYIHAVLD 146 Query: 129 KAAPVIRPN 137 A Sbjct: 147 DVAQSRSAE 155 >UniRef50_UPI0001BC65B2 16S rRNA m(5)C 967 methyltransferase n=2 Tax=Fusobacterium RepID=UPI0001BC65B2 Length = 440 Score = 99.3 bits (247), Expect = 3e-20, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 44/124 (35%), Gaps = 4/124 (3%) Query: 16 ALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLE 75 AL + + K + + E+ GV N YLD ++ + E Sbjct: 9 ALLQEVDQGKYSNIALNELFHRKVFKKGEKNFITEVFYGVIRNKIYLDYMISQKVK---E 65 Query: 76 ELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIR 135 + + R++ Y++ K I E +ELAK +FVNGVL Sbjct: 66 VKKDWLQQLFRLSFYQIRFMKS-DDKGVIWEGVELAKKKYGVSVSRFVNGVLRNFQRSFI 124 Query: 136 PNKK 139 ++ Sbjct: 125 EEEE 128 >UniRef50_A3VQU7 TRNA and rRNA cytosine-C5-methylase-like protein n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VQU7_9PROT Length = 455 Score = 99.3 bits (247), Expect = 3e-20, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 46/129 (35%), Gaps = 3/129 (2%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR A+ L + + + A +D++ D + R L+ V LD Sbjct: 30 ARRAALDILLAI-RRGQALDMAMAESEAFEDLEGADRGFARTLIMAVLRRQNTLDEAYGT 88 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA-EDSHKFVNGVL 127 +L R L+ +LR+A ++ VP A ++LAK K +N + Sbjct: 89 FLDRPLKSTQGTVITLLRLAAAQIL-LLGVPPHAATATTVDLAKERRDSAGFAKLLNALC 147 Query: 128 DKAAPVIRP 136 + Sbjct: 148 RRMVEKGPS 156 >UniRef50_C7PI91 NusB antitermination factor n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PI91_CHIPD Length = 309 Score = 99.3 bits (247), Expect = 4e-20, Method: Composition-based stats. Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 1/101 (0%) Query: 40 VKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDV 98 + + Y RELL V Y L+KP L E + V+ ++ + + E + Sbjct: 200 ISREKLEYARELLLTVLDKKEYCLELIKPKLQNWDPERIAAVDMLLMEMGVCEFLYFPTI 259 Query: 99 PYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 P KV INE I+LAK++ S +FVNG+LD + + Sbjct: 260 PTKVTINEYIDLAKAYSTPQSGQFVNGILDNILKDLDQANQ 300 >UniRef50_Q88B41 Ribosomal RNA small subunit methyltransferase B n=23 Tax=Gammaproteobacteria RepID=RSMB_PSESM Length = 448 Score = 98.9 bits (246), Expect = 4e-20, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 40/114 (35%), Gaps = 3/114 (2%) Query: 23 SQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEK 82 + + L + ++ D ++L G A L L L + + + Sbjct: 17 GKASLNSSLPTQLDKVEL--RDRGLTQDLAFGTARWQPRLSALAAKLLQKPFKAADADVE 74 Query: 83 AVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRP 136 A+L + LY+L S +P AI E + A + +N VL A Sbjct: 75 ALLLVGLYQLFY-SRIPAHAAIGETVGCADKLKKPWAKGLLNAVLRNAQRDGEA 127 >UniRef50_Q14PA1 Putative ribosomal rna small subunit methyltransferase protein n=1 Tax=Spiroplasma citri RepID=Q14PA1_SPICI Length = 423 Score = 98.9 bits (246), Expect = 5e-20, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 50/124 (40%), Gaps = 4/124 (3%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNTAYLDGLM 66 +ARE A L+ + + + D D D ++ G N YL+ + Sbjct: 2 QAREVAWNILWKIFAKNKFSNHLLSNIVEQNDNFIDQDKTLIYRIVYGTLKNKLYLEYIA 61 Query: 67 KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGV 126 ++ ++ Q + +L +++Y+ +P +NEA+ ++KS F+N Sbjct: 62 NQFIES--KKTNQKLQILLWMSIYQFRFLDRIPNYAIVNEAVNISKSVS-PKYAGFINTT 118 Query: 127 LDKA 130 L K Sbjct: 119 LKKI 122 >UniRef50_C0N5F9 Ribosomal RNA small subunit methyltransferase B n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N5F9_9GAMM Length = 406 Score = 98.5 bits (245), Expect = 5e-20, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 1/101 (0%) Query: 38 QDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSD 97 + D + ++++L GV L L L + + A+ LY+L Sbjct: 6 PQLNDNERSFYQQLCYGVLRLHPTLIFLGNQLLKKPFKNKDADIAALFLTGLYQLRDL-R 64 Query: 98 VPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 P AI+E + AK G + + +N L + Sbjct: 65 TPSHAAISETVNAAKKLGKQWATGLLNACLRNYQRQHTELE 105 >UniRef50_C0QT45 N utilization substance protein B homolog n=2 Tax=Aquificales RepID=NUSB_PERMH Length = 142 Score = 98.5 bits (245), Expect = 6e-20, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 63/135 (46%), Gaps = 4/135 (2%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAE--QDVKDVDVLYFRELLAGVATNTAYLD 63 R++ARE + LY++ + D+ ++ + + + V Y +L G+ + +D Sbjct: 5 RKKAREIVFRTLYTYDIKGGDLFEIMEDHIKDIRGKLSKKTVDYIYSILKGIDEHLPEID 64 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF-GAEDSHK 121 +++ L LE LG E+A+LR+ +YEL + ++L K + D+ K Sbjct: 65 DILRENLKNWRLERLGYPERALLRLGVYELLFSDIEDKGRVFMDILDLTKCYIDNPDTVK 124 Query: 122 FVNGVLDKAAPVIRP 136 F+NGVL + Sbjct: 125 FINGVLSTVYKNRQK 139 >UniRef50_C0WL14 Transcription antitermination protein NusB n=1 Tax=Corynebacterium accolens ATCC 49725 RepID=C0WL14_9CORY Length = 211 Score = 98.1 bits (244), Expect = 7e-20, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 6/124 (4%) Query: 15 QALYSWQLSQNDIADVEYQFLAEQDVK----DVDVLYFRELLAGVATNTAYLDGLMKPYL 70 LY + D + +A Y + ++ GVA +D + YL Sbjct: 27 DILYEAENRDVDPVAIVEDRVALAREDRHAVAPIADYTKVIVQGVAEELDAIDDTISRYL 86 Query: 71 --SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 + L + V++A+LR++++EL DVP A+ E +ELA + + + +++ VLD Sbjct: 87 SQNWELHRIPAVDRAILRLSVWELLFNPDVPTATAVVEGVELASQYSHDQAAPYIHAVLD 146 Query: 129 KAAP 132 A Sbjct: 147 DVAQ 150 >UniRef50_C8NZ84 rRNA methylase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZ84_ERYRH Length = 404 Score = 98.1 bits (244), Expect = 8e-20, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 44/128 (34%), Gaps = 7/128 (5%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R + + L V + D+ D + + N+ +LD + Sbjct: 3 RIESYKVLSEVYFKGRHAHLVLKEL----DLPAQDQAFVSAFVYATLQNSLFLDYQYEDL 58 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 + + L + + V+++ + K +P ++E ++L K+ G VN VL K Sbjct: 59 VDKK---LPKEVRLVIKMGCAQYFKMDKIPDYALVSETVDLCKAIGKHRYSGVVNAVLKK 115 Query: 130 AAPVIRPN 137 Sbjct: 116 VIERNERE 123 >UniRef50_Q2S463 Ribosomal RNA small subunit methyltransferase B n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S463_SALRD Length = 427 Score = 97.7 bits (243), Expect = 9e-20, Method: Composition-based stats. Identities = 29/108 (26%), Positives = 43/108 (39%), Gaps = 1/108 (0%) Query: 28 ADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRI 87 D L +D REL+AGV +LD ++ + + + +LR+ Sbjct: 4 DDAFVDKLTIEDADARTRRQARELVAGVTRQRRWLDFVLGEAYHGDYDSMEHRLQEILRL 63 Query: 88 ALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIR 135 LYEL P A++E +ELAK + VNGVL Sbjct: 64 GLYELLF-QSTPTHAAVDEYVELAKQALRPGAGNLVNGVLRTIDRDRE 110 >UniRef50_B8J9P4 NusB/RsmB/TIM44 n=4 Tax=Anaeromyxobacter RepID=B8J9P4_ANAD2 Length = 455 Score = 97.7 bits (243), Expect = 9e-20, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 48/128 (37%), Gaps = 2/128 (1%) Query: 9 ARECAVQALYSWQLSQNDIA-DVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 AR A L + + ++ A + + EL+ G LD + Sbjct: 12 ARGIAFDVLRRVEEGGAYASRALDAALGAAGALDPREAGLATELVYGTLRRALALDAALA 71 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 P+ R L EL + LR+ Y+L P A+ E + LAK+ + +VN VL Sbjct: 72 PHSRRALAELDPAARVALRLGAYQLLVL-GTPAHAAVGETVALAKAVDHGRAAGYVNAVL 130 Query: 128 DKAAPVIR 135 + R Sbjct: 131 RSLSRAAR 138 >UniRef50_A6UED5 Fmu (Sun) domain protein n=14 Tax=Rhizobiales RepID=A6UED5_SINMW Length = 470 Score = 97.7 bits (243), Expect = 9e-20, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 49/133 (36%), Gaps = 5/133 (3%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQ---DVKDVDVLYFRELLAGVATNTAYLDG 64 ++R+ A + L + + + + ++ D D R +L + + Sbjct: 38 KSRQAAAKILAAVVDRKTPLDGMLDPERGNPVYRELNDADRALVRAILNSALRHLPRIRA 97 Query: 65 LMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAK-SFGAEDSHKFV 123 + L L E + + VL +A ++ DVP A++ A+E A+ V Sbjct: 98 AIDSLLQTPLPEGARALEHVLTVAAAQILYL-DVPDHSAVDLAVEQAQSDPRNRRFASLV 156 Query: 124 NGVLDKAAPVIRP 136 N VL + + Sbjct: 157 NAVLRRLSREKEA 169 >UniRef50_Q1N3W2 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent (Fragment) n=1 Tax=Bermanella marisrubri RepID=Q1N3W2_9GAMM Length = 184 Score = 97.7 bits (243), Expect = 1e-19, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 52/135 (38%), Gaps = 5/135 (3%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MKP R A L + + + +D+ D + + G + Sbjct: 1 MKPL--HNVRSIAAVILLGVIDEKKSLNTLLPYH--SRDLLPEDKAQLQSICFGACRHFF 56 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 ++ L K L + L E ++ +++L I LY+L+ S +P AI++ + + Sbjct: 57 SINALSKMLLDKPLPEKARLTQSLLWIGLYQLAH-SHMPEHAAIHQTVAACDNLKQTPFK 115 Query: 121 KFVNGVLDKAAPVIR 135 K +N +L + Sbjct: 116 KLINAILRRFQREKD 130 >UniRef50_C2D8V4 Putative uncharacterized protein n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D8V4_9ACTN Length = 537 Score = 97.4 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 53/123 (43%), Gaps = 3/123 (2%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 +R A +AL + + + D F A + + + + ++ GV ++ + +D ++ Sbjct: 9 SRTVAFKALCALRKNTTYAQDFLKHFDAFCALLQDEKSFVQHVVCGVISSQSMVDKILAQ 68 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 Y+ R LR+A YEL R +++ +EL + + FVN VL Sbjct: 69 YVKR-FAHQPYKVLICLRMATYELVYRQ-TAAYAVVSQYVELVR-LVDKRGASFVNAVLH 125 Query: 129 KAA 131 + A Sbjct: 126 RIA 128 >UniRef50_D1R943 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R943_9CHLA Length = 187 Score = 97.4 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 37/127 (29%), Positives = 53/127 (41%), Gaps = 1/127 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 RE LYS + ++ + E V E + V A +D L+ Sbjct: 9 REVVFVLLYSQDCGRVSEQELVELVMKELAVTKKTAYSALEKVELVLEKKAEIDDLIANT 68 Query: 70 LSR-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 E + VEK VLR+ +YE+ +P KVAI EAI L++ F +S FVN +LD Sbjct: 69 SREYRFERIQTVEKNVLRLGIYEMLFDDSIPPKVAIAEAIRLSRKFSTPESATFVNALLD 128 Query: 129 KAAPVIR 135 Sbjct: 129 HIYQTKE 135 >UniRef50_Q9CHN4 N utilization substance protein B homolog n=1 Tax=Lactococcus lactis subsp. lactis RepID=NUSB_LACLA Length = 192 Score = 97.4 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 3/102 (2%) Query: 33 QFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLS--RLLEELGQVEKAVLRIALY 90 + ++ YF +L+ GV L+ + YL+ L VE+A+L+++ Y Sbjct: 92 NYDNDRPEDLEAPEYFTQLVDGVLDKKEDLEANISKYLTKTWSFSRLTLVEQAILQVSSY 151 Query: 91 ELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAP 132 E+ ++ P VA+NEA+EL+K F E S +F+NGVL Sbjct: 152 EILY-TETPDVVAVNEAVELSKDFSDEKSSRFINGVLTNFLK 192 >UniRef50_B0JGZ3 N utilization substance protein B homolog n=12 Tax=Cyanobacteria RepID=NUSB_MICAN Length = 217 Score = 97.4 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 31/98 (31%), Positives = 55/98 (56%), Gaps = 2/98 (2%) Query: 43 VDVLYFRELLAGVATNTAYLDGLM-KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYK 101 Y EL+ V A ++ + + L L ++++ +L+IA+ E+ D+P K Sbjct: 115 EVREYALELIGTVYRRRAEIEQELTGALVDWQLHRLPRIDRDILQIAVAEMLYL-DLPQK 173 Query: 102 VAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 VAINEAIELAK + ++ ++F+NGVL + + ++K Sbjct: 174 VAINEAIELAKRYSDDEGYRFINGVLRRVTNKLNESEK 211 >UniRef50_A6LN58 NusB/RsmB/TIM44 n=2 Tax=Thermosipho RepID=A6LN58_THEM4 Length = 416 Score = 97.0 bits (241), Expect = 2e-19, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 11/121 (9%) Query: 12 CAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLS 71 A + L S + F ++ +F+ L+ GV YLD ++ L Sbjct: 7 IAYRLLRKKFRSGIFSTEFYQAFSYVEE-----KAFFKNLIFGVLRKQEYLDWVINSLLK 61 Query: 72 RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAA 131 + +++ + +LRI Y+L + P +NE +EL + VN +L K + Sbjct: 62 K--KDIPPSIRTILRIGTYQLLFTNK-PSYSIVNETVELVEKKS---FKGLVNAILRKIS 115 Query: 132 P 132 Sbjct: 116 K 116 >UniRef50_UPI0001699525 transcription antitermination protein NusB n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001699525 Length = 182 Score = 97.0 bits (241), Expect = 2e-19, Method: Composition-based stats. Identities = 42/86 (48%), Positives = 58/86 (67%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 R +AR AVQA+Y WQ++ D+A + QFL EQD+ +V YF++LL GV N LDG Sbjct: 4 KRSQARRHAVQAIYQWQMAGQDLAAIYEQFLGEQDLSQFEVPYFKDLLHGVPNNLQELDG 63 Query: 65 LMKPYLSRLLEELGQVEKAVLRIALY 90 L+KP L R +E + VE+AVLR+ +Y Sbjct: 64 LLKPALDRAIESVDPVERAVLRLGVY 89 >UniRef50_A8RBL8 Putative uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=A8RBL8_9FIRM Length = 126 Score = 96.6 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 7/130 (5%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 +R + RE A+ +LY L DI + Y+ ++ + + Sbjct: 2 TLSRHKLREIAMTSLYQHFLLSKDIKECVYENTQSNEIDP----FLYTITIDAIRYKDTY 57 Query: 63 DGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 G + L E LG VEKA+L +A EL + P + I+EA+ LAK + ED++ Sbjct: 58 VGHIDETLRDDWTFERLGYVEKAILLMAACELDFET-APKAIVIDEAVNLAKKYCDEDTY 116 Query: 121 KFVNGVLDKA 130 + +NGVLD+ Sbjct: 117 RLINGVLDRL 126 >UniRef50_Q0VTE3 tRNA and rRNA cytosine-C5-methylase, putative n=2 Tax=Alcanivorax RepID=Q0VTE3_ALCBS Length = 447 Score = 96.6 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 2/123 (1%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R AV+AL + D + + L + ++ D R++ GV + L+ + Sbjct: 17 RLSAVRALNRVLPGKGD-GESLREVLRDFPLQGSDGGQMRDICFGVCRHLRPLNHWLNQQ 75 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 LS+ L+ Q + L LYEL + P +N +L + A + N VL K Sbjct: 76 LSKPLKGSAQPVRLALLAGLYELWFSNR-PAHAIVNAYPQLCRKLKAPWAAGLSNAVLRK 134 Query: 130 AAP 132 A+ Sbjct: 135 ASQ 137 >UniRef50_C7M0X2 NusB antitermination factor n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M0X2_ACIFD Length = 145 Score = 96.2 bits (239), Expect = 3e-19, Method: Composition-based stats. Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 11/130 (8%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 RE ++ LY AD+ + + RE + G+ + +D + + Sbjct: 16 RERVLELLYEADTKGEAPADLLR---------GDEPAFIRERIRGLTERRSEIDAQLTAH 66 Query: 70 LSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 + LE L +++A+LR+A EL + P VAI EA++LA + E S FVNGVL Sbjct: 67 VIGWQLERLAPIDRAILRLATAELL-EASTPPSVAIAEAVKLADRYSTERSAAFVNGVLA 125 Query: 129 KAAPVIRPNK 138 A I Sbjct: 126 SIAVDIAGEG 135 >UniRef50_A5WI31 Fmu (Sun) domain protein n=3 Tax=Psychrobacter RepID=A5WI31_PSYWF Length = 528 Score = 95.8 bits (238), Expect = 4e-19, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 47/133 (35%), Gaps = 6/133 (4%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLM 66 + R + L S Q ++ + L + D + LL + L+ Sbjct: 12 KNVRVAVINTLLSIQQ-GQSLSGLLDPLL--NSLNGDDKGFAHALLLTTLRHWHATARLL 68 Query: 67 KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGV 126 ++E+ + +++ + +L +V AI+E +E K + VN V Sbjct: 69 DSLADNPIDEIE--VRTTIQLGITQLLYL-NVADHAAIHETVEAVKHIDYARASGLVNAV 125 Query: 127 LDKAAPVIRPNKK 139 L K A +K Sbjct: 126 LRKVAKNPNKFRK 138 >UniRef50_C2CFC5 Possible transcription antitermination protein NusB n=2 Tax=Anaerococcus RepID=C2CFC5_9FIRM Length = 133 Score = 95.8 bits (238), Expect = 4e-19, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 59/136 (43%), Gaps = 8/136 (5%) Query: 4 AARRRARECAVQALYSWQLSQ-NDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 R RE + +Y +S+ D+ + + + D + + ++ + Sbjct: 1 MNRVEQREWVFKLIYQDMISKIEDVDKILAE------LNLADEDFIKASISSYLDKLTLI 54 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + + L + + +V +++L +++ E+ D+P V+INEA+ LAK + E+ +K Sbjct: 55 EEKVDSNLDSKHKRIAKVLRSILYLSINEIYFM-DIPVSVSINEAVNLAKKYSDEEDYKL 113 Query: 123 VNGVLDKAAPVIRPNK 138 VN +L K Sbjct: 114 VNSILGSIVRKDGNEK 129 >UniRef50_A9BJY1 NusB antitermination factor n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BJY1_PETMO Length = 151 Score = 95.8 bits (238), Expect = 4e-19, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 68/132 (51%), Gaps = 4/132 (3%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLY---FRELLAGVATNTAY 61 +R R+ ++L+ + + ++ + F + ++ Y ++ + + N Sbjct: 14 KKRMMRKLIFESLFQLSIKDVKLDNILFTFEKLNEQAHLEESYYLEAKQYIEDIYKNKNE 73 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 D L+ Y +E +G +EK V+RI +YEL + D+P KV +NE+ EL K++ + + Sbjct: 74 YDALINKYSEGWRVERIGNIEKTVMRIFIYELINKKDIPVKVILNESTELTKTYATQKAA 133 Query: 121 KFVNGVLDKAAP 132 FVNG++DK A Sbjct: 134 AFVNGIMDKIAR 145 >UniRef50_Q030T8 Transcription termination factor n=3 Tax=Lactococcus lactis RepID=Q030T8_LACLS Length = 325 Score = 95.4 bits (237), Expect = 4e-19, Method: Composition-based stats. Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 3/103 (2%) Query: 33 QFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALY 90 + ++ YF +L+ GV L+ + YL + L VE+A+L+++ Y Sbjct: 223 NYDNDRAEDLEAPEYFTQLVDGVLEKKEDLEINISKYLAKNWSFSRLTLVEQAILQVSTY 282 Query: 91 ELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPV 133 E+ +D P VA+NEAIEL+K F E S +F+NGVL Sbjct: 283 EILF-TDTPNVVAVNEAIELSKDFSDEKSSRFINGVLTNFLKE 324 >UniRef50_C5PR17 N utilization substance protein n=2 Tax=Sphingobacterium spiritivorum RepID=C5PR17_9SPHI Length = 307 Score = 95.4 bits (237), Expect = 5e-19, Method: Composition-based stats. Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 2/129 (1%) Query: 13 AVQALYSWQLSQNDIADVEYQFLAEQDVK-DVDVLYFRELLAGVATNTAYLDGLMKPYLS 71 +QAL + + LAE D + +LLA L+ Sbjct: 169 VLQALIAKTFKNFSSEIPQQNKLAELTQNWLDDREFVLDLLANTIRYGEEYQSLIAAKTK 228 Query: 72 RL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 + + ++ ++R+A+ EL S +P KV INE IEL+K F S+ F+NG+LDK Sbjct: 229 NWEADRIALLDTILMRMAICELINFSSIPVKVTINEYIELSKVFSTLKSNTFINGILDKI 288 Query: 131 APVIRPNKK 139 + + Sbjct: 289 LADLNQQGR 297 >UniRef50_Q04EK8 Transcription termination factor n=2 Tax=Oenococcus oeni RepID=Q04EK8_OENOB Length = 130 Score = 95.0 bits (236), Expect = 6e-19, Method: Composition-based stats. Identities = 45/129 (34%), Positives = 74/129 (57%), Gaps = 5/129 (3%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 +R++ RE + QA+++ +++ + + + L +Q+ D YF EL+ GV L+ Sbjct: 4 SRQQIRELSFQAIFALEINSDQDKALLKKVLFKQNTID---DYFNELVDGVFAVHKELEE 60 Query: 65 LMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 KPYL LE + + ++I L+EL+ R D+P KV++++A ELAK+FG E KF Sbjct: 61 KYKPYLKDNWSLERISKTADIAMQIGLFELTSRIDIPKKVSLDQATELAKNFGDESDGKF 120 Query: 123 VNGVLDKAA 131 VNGVL Sbjct: 121 VNGVLAHFV 129 >UniRef50_C0BGT7 Transcription antitermination factor NusB n=1 Tax=Flavobacteria bacterium MS024-2A RepID=C0BGT7_9BACT Length = 314 Score = 95.0 bits (236), Expect = 7e-19, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 1/119 (0%) Query: 22 LSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL-DGLMKPYLSRLLEELGQV 80 L D+ + D + +LL V N + L + L+ + E + Q+ Sbjct: 187 LKHIDVNSSQTLTFPRPSENKEDTDFGIQLLEKVIANDSKLQEELLGKTPNWDAERIAQL 246 Query: 81 EKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 + +L++A+ EL +P KV +NE +E+AK + S+ FVNGVLDK + Sbjct: 247 DNVILKVAIAELLYFPMIPSKVTLNEYLEIAKDYSTPKSNNFVNGVLDKLVKEFDHENR 305 >UniRef50_C5CGV6 NusB/RsmB/TIM44 n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CGV6_KOSOT Length = 336 Score = 95.0 bits (236), Expect = 7e-19, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 6/123 (4%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R+ A++ L + + +A + + ++ L+ +D ++ + Sbjct: 5 RQKALETLAFFDQNGYIPFRKVE--IAISTLSSIGRRFYMNLVMETLRKRIQIDYILNQF 62 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 L + E+L LR+ + +L VP AI+ ++EL K+ K VN VL K Sbjct: 63 LKKP-EKLPAPVMNALRLGVTQLFYMDSVPEFAAIHSSVELLKAKS---FKKLVNAVLRK 118 Query: 130 AAP 132 + Sbjct: 119 ISK 121 >UniRef50_B9GFY0 Predicted protein n=6 Tax=Spermatophyta RepID=B9GFY0_POPTR Length = 527 Score = 95.0 bits (236), Expect = 7e-19, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 3/99 (3%) Query: 35 LAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLS--RLLEELGQVEKAVLRIALYEL 92 +D+ D D+ +++ G YLD L+ + + + +LRI YE+ Sbjct: 103 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDYLIGSLCHDEKAFRSMEPLLLQILRIGFYEI 162 Query: 93 SKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAA 131 K D+P ++E + LAK + VNG+L K Sbjct: 163 VKL-DMPSYAVVDENVRLAKVSLRPGAGNMVNGILRKLV 200 >UniRef50_P74395 N utilization substance protein B homolog n=16 Tax=Cyanobacteria RepID=NUSB_SYNY3 Length = 221 Score = 95.0 bits (236), Expect = 7e-19, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 2/93 (2%) Query: 43 VDVLYFRELLAGVATNTAYLDGLM-KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYK 101 + EL+ V +D + + + L L ++++ +LR+A+ EL VP K Sbjct: 118 EVRKFALELIGTVCRRRQQIDEQLQEAMVDWQLSRLAKIDQDILRLAIAELDYL-GVPQK 176 Query: 102 VAINEAIELAKSFGAEDSHKFVNGVLDKAAPVI 134 VAINEA+ELAK + +D H+F+NGVL + Sbjct: 177 VAINEAVELAKRYSGQDGHRFINGVLRRVTEKK 209 >UniRef50_B6FZ39 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6FZ39_9CLOT Length = 173 Score = 94.7 bits (235), Expect = 7e-19, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 1/114 (0%) Query: 23 SQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVE 81 + +D+ + +++ Y + +D + Y + + +V+ Sbjct: 60 NDSDVHESMETEEEIDLENYLNLDYVSNVCKIYEEKHEEIDEAIDKYAKGWSIMTMPKVD 119 Query: 82 KAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIR 135 A+LR+A+ E+ +P KV+INEAIE+AK + + S KF+NGVL + Sbjct: 120 VAILRLAIAEIGFIDSIPEKVSINEAIEMAKMYCDDKSPKFINGVLGSYLNDRK 173 >UniRef50_Q0F395 Sun protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F395_9PROT Length = 404 Score = 94.7 bits (235), Expect = 8e-19, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 47/131 (35%), Gaps = 7/131 (5%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 + R+ A+++L + Q ++ + EL+ GV L+ Sbjct: 2 QVRKAAIESLADILVRQRKAEQAMERY--GVRLDARGRGLLHELVYGVLRRFYSLEADYS 59 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 + ++ + L I Y+L VP A++E + A + FVN VL Sbjct: 60 RFCRSKPDDTA---RMALLIGTYQLRYM-RVPAHAALSETV-AAVMQSNPKAGGFVNAVL 114 Query: 128 DKAAPVIRPNK 138 + + P K Sbjct: 115 RRVSEHEPPQK 125 >UniRef50_B9ZKR1 Sun protein n=2 Tax=Chromatiales RepID=B9ZKR1_9GAMM Length = 451 Score = 94.7 bits (235), Expect = 8e-19, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 45/132 (34%), Gaps = 3/132 (2%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLM 66 R R+ A++A L + + + D + + L L L+ Sbjct: 17 RSPRQRALEAAEGVVLQGHSLTRAVEHATE--GLNARDAAWVQALAYTTLRWYPQLSALV 74 Query: 67 KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGV 126 +L R L + V +L L EL A+ E ELA++ + +N V Sbjct: 75 NGFLERPLRKKDAVIGVLLAQGLAELMHF-STRDHAAVRETAELARAIHRPGAVGLINAV 133 Query: 127 LDKAAPVIRPNK 138 L +A + Sbjct: 134 LRRAQREQDALE 145 >UniRef50_C9UP93 Fmu domain-containing protein n=1 Tax=Brucella abortus bv. 3 str. Tulya RepID=C9UP93_BRUAB Length = 252 Score = 94.7 bits (235), Expect = 8e-19, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 47/131 (35%), Gaps = 5/131 (3%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQD---VKDVDVLYFRELLAGVATNTAYLDGL 65 AR CA + L + + + ++ D R +L N ++ Sbjct: 31 ARLCAARLLGAVIEKNTSLDGLTDNAHGHPQYLALEPRDRALVRAILGSALRNRGSIERA 90 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAK-SFGAEDSHKFVN 124 + L R L E K +L +A+ ++ D+P A++ A+E A VN Sbjct: 91 INKRLDRPLPENAVALKHLLHVAVAQIFYL-DLPDHSAVDLAVEAANSDPRNRKYAGLVN 149 Query: 125 GVLDKAAPVIR 135 +L + A Sbjct: 150 ALLRRLARNKE 160 >UniRef50_B6GC41 Putative uncharacterized protein n=2 Tax=Collinsella RepID=B6GC41_9ACTN Length = 495 Score = 94.7 bits (235), Expect = 9e-19, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 3/125 (2%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR + AL Q S + D+ + D + L GV LD + Sbjct: 29 ARRATLDALMQAQESGRYVRDIFAHGDQLGRLSSRDAAFALRLALGVTATEGCLDDALNS 88 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 +L++ + + + LRI+ YE D P V +++ +EL +S A+ + N VL Sbjct: 89 HLAKPGK-VSARVRCCLRISAYEALYL-DTPADVVVSQGVELVRS-CAKSASGLANAVLR 145 Query: 129 KAAPV 133 + Sbjct: 146 RVCEN 150 >UniRef50_B8DMM9 NusB/RsmB/TIM44 n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DMM9_DESVM Length = 530 Score = 94.7 bits (235), Expect = 9e-19, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 1/100 (1%) Query: 33 QFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYEL 92 L + D EL+ G + + L++ +L+ E+L Q L +A +E+ Sbjct: 82 SALRHAGISRQDAALATELVYGYLRSEIRISWLLRRFLTAP-EKLPQEALLTLGVAAHEI 140 Query: 93 SKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAP 132 +P A++ A+ + K N VL A Sbjct: 141 VHLDRIPDYAAVDWAVTHIRQRFGPGLGKLANAVLRNVAR 180 >UniRef50_A1WZH2 Sun protein n=1 Tax=Halorhodospira halophila SL1 RepID=A1WZH2_HALHL Length = 429 Score = 94.7 bits (235), Expect = 9e-19, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 43/128 (33%), Gaps = 3/128 (2%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R AV L + + + V + + + L+ G L+ + Sbjct: 6 RVAAVHVLERVLERGETLDEALEAQFSR--VSERNRSLLQALVYGALRWLTRLEAQVATL 63 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 R + + +L I +E + P A++EA++ A+ + VN VL K Sbjct: 64 TPRDDWRADPLLRGLLVIGAWEAQGLA-TPAHAAVSEAVDAARRLRRARAAGMVNAVLRK 122 Query: 130 AAPVIRPN 137 P Sbjct: 123 LHKATPPG 130 >UniRef50_A1ZKP0 NusB antitermination factor n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZKP0_9SPHI Length = 462 Score = 94.7 bits (235), Expect = 9e-19, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 11/141 (7%) Query: 5 ARRRARECAVQALYSW----QLSQNDIADVEYQFLAEQDVK------DVDVLYFRELLAG 54 R+ + AV+ + + + D + E ++ D DV++++ L Sbjct: 305 NRKVVQSMAVKTIKAIMGDTEEEDGDAEETEITINKNFELSPLSKNWDEDVVFYKNLYNF 364 Query: 55 VATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKS 113 + ++ +E L ++K +L++A+ E+ +P KV INE IELAK+ Sbjct: 365 NVEGNQRYEDIIAKKTKNWDIERLALIDKVILKMAICEMINFYSIPVKVTINEYIELAKT 424 Query: 114 FGAEDSHKFVNGVLDKAAPVI 134 + S KFVNG+LD A + Sbjct: 425 YSTPKSKKFVNGLLDSIAQDL 445 >UniRef50_B1A1G7 Putative N utilization substance protein (Fragment) n=1 Tax=Flammeovirga yaeyamensis RepID=B1A1G7_9SPHI Length = 200 Score = 94.7 bits (235), Expect = 9e-19, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 1/99 (1%) Query: 42 DVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPY 100 D D +F +L ++ + ++ + +V+ ++ +AL E+ ++P Sbjct: 90 DEDKEFFEDLYKYTLEQEESFKEIIAKKSKKWAIDRIAKVDSILINMALAEMLNFRNIPV 149 Query: 101 KVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 KV INE IE++K + S +F+NG+LD + + K Sbjct: 150 KVTINEFIEISKQYSTPKSWQFINGMLDSISEELEAEGK 188 >UniRef50_A5CEP9 N utilization substance protein B n=2 Tax=Orientia tsutsugamushi RepID=A5CEP9_ORITB Length = 162 Score = 94.3 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 36/155 (23%), Positives = 64/155 (41%), Gaps = 19/155 (12%) Query: 2 KPAARRRARECAVQALY--SWQLSQNDIADVEYQF---------LAEQDVKDVDV----- 45 K + R ++Q +Y S+ I + L + ++ Sbjct: 7 KINTKTITRIASIQGVYSYQILDSEPTIDSIIDFIITYYKDKSSLEDLELDSAIPCFKLR 66 Query: 46 -LYFRELLAGVATNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKV 102 Y +L+ N +D ++ YL + +++L + ++LR+A EL + PYKV Sbjct: 67 TNYLTKLVNETIDNLETIDMIISSYLADNWQIKDLHLILLSILRVATCELKFFTSTPYKV 126 Query: 103 AINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPN 137 INE +A F E FVN +L+K + +R N Sbjct: 127 VINEFTNIASDFVKESEIGFVNSLLEKISFNVRTN 161 >UniRef50_Q603G1 Sun protein n=1 Tax=Methylococcus capsulatus RepID=Q603G1_METCA Length = 431 Score = 94.3 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 48/131 (36%), Gaps = 6/131 (4%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 ++R A AL+ + ++ + + L D + + L GV LD L+ Sbjct: 4 KSRTLAAAALHDVVVDRHSLTWALGKRLPSLP-DARDRAFVQSLCYGVLRAFETLDFLLG 62 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 ++ + + + I L++L +V A++E +E A + +N +L Sbjct: 63 RLATKPIR--DPEIRLLALIGLHQLRSM-NVKPHAAVSETVEAAGRKS--WAKPLLNAIL 117 Query: 128 DKAAPVIRPNK 138 + Sbjct: 118 RNYLRRKEELE 128 >UniRef50_B3E3P1 Sun protein n=4 Tax=Desulfuromonadales RepID=B3E3P1_GEOLS Length = 464 Score = 94.3 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 50/127 (39%), Gaps = 1/127 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R+ A L S D+ Q L+ ++ D F EL+ GV LD +K Sbjct: 19 RQAAYTTLQRLSGSDLHADDLIDQELSRNQLQGPDRGLFAELVFGVLRRQGTLDHYLKQL 78 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 + + LE L +LR+ LY+L VP A++ +EL + +NGVL Sbjct: 79 VQQPLERLELPVLLLLRLGLYQLRYLDRVPSHAAVHATVELTNEIL-PRAKGLINGVLRS 137 Query: 130 AAPVIRP 136 Sbjct: 138 YLRRQES 144 >UniRef50_C2MAV6 NusB family protein n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2MAV6_9PORP Length = 347 Score = 94.3 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 52/129 (40%), Gaps = 5/129 (3%) Query: 12 CAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLS 71 A++ L L D D LY +LL+ + D ++ P L Sbjct: 220 FALKTLR----RGAKDGLELPGDLLPMFHSDRDRLYAHQLLSETLLHREEYDAMLTPRLD 275 Query: 72 RL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 + + V+ ++ +A+ E D+ V INE IELAK + S F+N VLD+ Sbjct: 276 NWEQDRVALVDMILMEMAVAEALSCPDIALVVTINEYIELAKVYDNAKSASFINAVLDRL 335 Query: 131 APVIRPNKK 139 ++ K Sbjct: 336 FTDLKGEGK 344 >UniRef50_C3J8Y9 NusB family protein n=2 Tax=Bacteria RepID=C3J8Y9_9PORP Length = 348 Score = 94.3 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 1/119 (0%) Query: 22 LSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQV 80 + + + + + D ELL + ++ L ++ + V Sbjct: 226 MRKAKPDTSFDEVIIPAYKDEEDTHLAAELLRTTIVHEEEYREIINKNLRNWDMDRVTDV 285 Query: 81 EKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 + +L++AL EL +P V +NE IELAK + +S FVNG+LD A +R ++ Sbjct: 286 DMIILQMALAELLSFPTIPTTVTLNEYIELAKIYSTAESGVFVNGLLDSALHQLRNERR 344 >UniRef50_C2HH21 Possible rRNA SAM-dependent methyltransferase RmsB n=2 Tax=Finegoldia magna RepID=C2HH21_PEPMA Length = 423 Score = 93.9 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 46/113 (40%), Gaps = 4/113 (3%) Query: 26 DIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVL 85 +++ + D+ D+ Y + + N ++D ++ L +L ++ +L Sbjct: 20 YSSELLKTY-DYGDLDKRDIAYIKRCVFTEIENRFFIDYVISKCSDLELNKLDKIVLEIL 78 Query: 86 RIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 R+A E+ ++EA+ELA + +VN VL + + + Sbjct: 79 RMATTEILFM-KTADYAVVDEAVELANNLTHYKD--YVNAVLREVCRINLDEE 128 >UniRef50_Q0C0J1 N utilization substance protein B homolog n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=NUSB_HYPNA Length = 154 Score = 93.5 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 10/133 (7%) Query: 14 VQALYSWQLSQNDIADVEYQFLAEQ--------DVKDVDVLYFRELLAGVATNTAYLDGL 65 VQALY + ++ +F+ ++ V+D D F+ ++ V + A +D Sbjct: 22 VQALYEMEQTEKSARATIREFMEDRLGLGPDGTPVEDADPDLFKSIVNSVVEHQAKIDTA 81 Query: 66 MKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 + L+ L L +A+LR E ++ + ++E + LA F E KF Sbjct: 82 ILARLAEGWKLTRLDATMRALLRAGAAEFIAHQELSDAIILSEYVSLAHDFFDEGDAKFA 141 Query: 124 NGVLDKAAPVIRP 136 N VL +R Sbjct: 142 NAVLQNMGRDLRA 154 >UniRef50_Q0AKI8 Fmu (Sun) domain protein n=1 Tax=Maricaulis maris MCS10 RepID=Q0AKI8_MARMM Length = 433 Score = 93.5 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 39/122 (31%), Gaps = 2/122 (1%) Query: 19 SWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELG 78 + + + + D D + R + A ++ LSR L E Sbjct: 17 AVMKQRRTLEAALEHTPEFAAMSDRDRAFARAITATTFRRLGQTRTVLNGLLSRPLHETS 76 Query: 79 QVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE-DSHKFVNGVLDKAAPVIRPN 137 + +A+L +L P ++ +ELA + +N VL + R Sbjct: 77 EGAQALLITGATQLLWMDGAP-HAVVSSTVELADARSDARKLKGLINAVLRRVDREGRER 135 Query: 138 KK 139 K Sbjct: 136 LK 137 >UniRef50_A0M4D8 Antitermination protein NusB n=8 Tax=Bacteroidetes RepID=A0M4D8_GRAFK Length = 337 Score = 93.5 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 1/100 (1%) Query: 41 KDVDVLYFRELLAGVATNTAYL-DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVP 99 + D + +L N L + ++ + + + +V+ ++++A+ E K + +P Sbjct: 229 NEEDKEFAIKLFRKTYLNDEDLSEEMLGKTPNWDKDRIAEVDMVLIKMAICEFLKFTSIP 288 Query: 100 YKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 KV INE +E+AK + S F+NGVLDK + + K Sbjct: 289 VKVTINEYLEIAKEYSTPKSSIFINGVLDKLSKEYQTEDK 328 >UniRef50_C9Q172 N utilization substance protein NusB n=9 Tax=Prevotella RepID=C9Q172_9BACT Length = 372 Score = 93.1 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 49/116 (42%), Gaps = 2/116 (1%) Query: 25 NDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKA 83 + + + L E + D + R+L N M L ++ Sbjct: 189 DPANKAKQELLPEYK-DEEDKDFARKLFRSTILNADQYQRYMSENSRNWDFSRLAYMDVV 247 Query: 84 VLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 +++IA+ E+ ++P V INE +ELAK + S ++NG+LD A + + + Sbjct: 248 IMQIAIAEMLTFPNIPVSVTINEYVELAKLYSTHRSGGYINGMLDTIARGLIAHGQ 303 >UniRef50_A6EGS9 Putative N utilization substance protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6EGS9_9SPHI Length = 297 Score = 93.1 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 1/95 (1%) Query: 42 DVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPY 100 + D + +L A L+ E + ++ ++++A+ EL +P Sbjct: 188 EEDRKFVEDLFAYTLRKDKEYQELIADRTKNWESERIALMDTILMKMAICELMNFPSIPV 247 Query: 101 KVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIR 135 KV INE ++L+K + S+ F+NG+LDK ++ Sbjct: 248 KVTINEYLDLSKDYSTPKSNSFINGILDKILGDLK 282 >UniRef50_C5X355 Putative uncharacterized protein Sb02g027560 n=1 Tax=Sorghum bicolor RepID=C5X355_SORBI Length = 574 Score = 93.1 bits (231), Expect = 3e-18, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 54/140 (38%), Gaps = 19/140 (13%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQD----------------VKDVDVLYFRELLA 53 R AV L + + + + + + + D D+ ++A Sbjct: 109 RAVAVVRLLRIEKGKAFVDLLNEKANDSGEKEIGYVERTLGFSTRYLDDRDIRLVTVIVA 168 Query: 54 GVATNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELA 111 G YLD L+ ++ E+ + +LRI +E+ K DVP A++E ++LA Sbjct: 169 GTVRWKRYLDYLIMSLCSEEKVFREMEPLLLQILRIGFFEILKL-DVPAYAAVDENVKLA 227 Query: 112 KSFGAEDSHKFVNGVLDKAA 131 K + VN +L K Sbjct: 228 KVALRPGAGNMVNAILRKLV 247 >UniRef50_Q2VBT2 NusB n=1 Tax=uncultured Bacteroidetes bacterium 'SBI2-18 P41A3' RepID=Q2VBT2_9BACT Length = 325 Score = 92.7 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 1/100 (1%) Query: 41 KDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVP 99 D D + EL+ V N L + E + Q++ +L++ L E +P Sbjct: 205 NDEDAEFGIELIKYVIENKEMLQDEISKVTPNWDNERIAQIDLILLQMCLSEFLFFKSIP 264 Query: 100 YKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 KV+INE +E+AK + ++ S+ F+NG++D + + Sbjct: 265 LKVSINEYLEIAKEYSSDKSNIFINGIMDSLSKQFENEGR 304 >UniRef50_C7N543 tRNA/rRNA cytosine-C5-methylase n=2 Tax=Slackia RepID=C7N543_SLAHD Length = 531 Score = 92.7 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 50/125 (40%), Gaps = 4/125 (3%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAE-QDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 AR A + + +++V ++ +K DV + L GV + LD + Sbjct: 96 ARIAACLSCRIVRERDAFVSEVVPGVVSRMGPMKPEDVAFATRLARGVVATSGALDDFIN 155 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 L + + + LR++ YEL VA+++ +EL ++ + N VL Sbjct: 156 RNLYSPAD-IQPNVRDALRVSAYELLYLKK-DDYVAVDQGVELV-AYVEPKARALANAVL 212 Query: 128 DKAAP 132 K A Sbjct: 213 RKMAR 217 >UniRef50_B2UP28 Sun protein n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UP28_AKKM8 Length = 412 Score = 92.7 bits (230), Expect = 4e-18, Method: Composition-based stats. Identities = 26/143 (18%), Positives = 52/143 (36%), Gaps = 13/143 (9%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK R+ A+ L SW ++ + + + + D + L+ V N Sbjct: 1 MKNNPPSP-RQTALNCLRSWHAGRSFAETLVDRECSRTALPSADRHLVQALVFSVLRNQT 59 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +LD ++ L+ + +L++ L +L + A+ E + LA + Sbjct: 60 WLDHVIGTLRKGRLDVEA---RLILQLGLSQL-FLLGMADHAAVYETVNLA----SVRLR 111 Query: 121 KFVNGVLDKAAPV----IRPNKK 139 VN +L A + +K Sbjct: 112 GLVNAILRNALRREKTILEEREK 134 >UniRef50_Q2G467 N utilization substance protein B homolog n=7 Tax=Sphingomonadales RepID=NUSB_NOVAD Length = 148 Score = 92.4 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 10/128 (7%) Query: 18 YSWQLSQNDIADVEYQF--------LAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 Y + Q + + +F + + + DV +F +++ GV +DGL+ Sbjct: 21 YQADMEQTPLHLLLDEFHQHRLGAEIEDVEYAKADVAFFDDVVKGVDARRDEIDGLLSAR 80 Query: 70 LS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 L+ L L + +LR YEL R DV I E +++A +F E KFVNG+L Sbjct: 81 LAKGWALPRLDRTMLQILRAGAYELMARRDVNVGTVITEYVDVAHAFFEEREAKFVNGLL 140 Query: 128 DKAAPVIR 135 D A +R Sbjct: 141 DAVAKDVR 148 >UniRef50_Q7NKZ0 N utilization substance protein B homolog n=1 Tax=Gloeobacter violaceus RepID=NUSB_GLOVI Length = 211 Score = 92.4 bits (229), Expect = 5e-18, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 64/119 (53%), Gaps = 2/119 (1%) Query: 22 LSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQV 80 +++ + +F+ D + Y ELL LD L+ + +E L ++ Sbjct: 91 INRVGASLELPEFVRLAD-ELQVRAYAFELLGAFVREGDNLDKLLDTCMEGWQVERLTRI 149 Query: 81 EKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 ++ +LR+AL E+ + VP++VAI+EA+ELAK + + + +F+NGVL + ++ ++ Sbjct: 150 DRDILRLALVEMVELKSVPFRVAIDEAVELAKKYSTDTAVRFINGVLRRVVQHLQLEQR 208 >UniRef50_D2MQI4 Putative ribosomal RNA small subunit methyltransferase B n=1 Tax=Bulleidia extructa W1219 RepID=D2MQI4_9FIRM Length = 404 Score = 92.0 bits (228), Expect = 5e-18, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 14/123 (11%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 + RE V+ L + Q E + + E++ G + L K Sbjct: 2 KEREAIVRILEHVLYDHAYASLSLKQLKIEGSI-----GFVTEVVYGTLRHYKLLQEQYK 56 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 P++ ++ +++ +L +ALY+ VP +N +EL KS FVN VL Sbjct: 57 PFVKKIKKKMD----VLLVMALYQHHFM-KVPDYAIVNSTVELVKS----QEKGFVNAVL 107 Query: 128 DKA 130 K Sbjct: 108 RKI 110 >UniRef50_C2KPZ2 Possible transcription antitermination protein NusB n=2 Tax=Mobiluncus mulieris RepID=C2KPZ2_9ACTO Length = 182 Score = 92.0 bits (228), Expect = 6e-18, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 14 VQALYSWQLSQNDIADVEYQFLAEQDVKDVDV----LYFRELLAGVATNTAYLDGLMKPY 69 + LY L D + Y ++ + Y RE+L GVA + +D + Y Sbjct: 1 MDVLYEAHLKDLDDSAGIYSLAKLRETETTAQTPMPPYAREILEGVAEHLDRIDAALATY 60 Query: 70 LS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 L + +V+ A++R+A +E+ DV VAI A++LA ++S KF+NG+L Sbjct: 61 SRAWSLHRMPEVDLAIMRVATWEILFNPDVDGPVAITAAMQLAAERSTDESPKFINGLLG 120 Query: 129 KA 130 Sbjct: 121 TI 122 >UniRef50_A0LDW0 Sun protein n=2 Tax=cellular organisms RepID=A0LDW0_MAGSM Length = 452 Score = 91.6 bits (227), Expect = 7e-18, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 3/122 (2%) Query: 10 RECAVQALYSWQLSQNDIADVEYQ-FLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 R A A+ + + Q + E++ G + A L+ + Sbjct: 9 RTMAAAAVSAMLSEHLPLETALEQQIHQQSGTSPEMRGRAHEIVVGTIRHMALLEATLTR 68 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF-GAEDSHKFVNGVL 127 ++ + L+ +AVL ALY+ P A++EA++L K + FVN VL Sbjct: 69 FMQKDLKAKHHYVRAVLLTALYQAQFM-RTPIHSAVDEAVKLVKQQPRDHNLSGFVNAVL 127 Query: 128 DK 129 + Sbjct: 128 RR 129 >UniRef50_C3RL93 Predicted protein n=4 Tax=Bacteria RepID=C3RL93_9MOLU Length = 134 Score = 91.6 bits (227), Expect = 7e-18, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 68/134 (50%), Gaps = 5/134 (3%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKD--VDVLYFRELLAGVATN 58 MK ++ RE AV A Y L + ++ +++D+ D Y + +A+N Sbjct: 1 MKKYRKKIIREKAVIATYQKLLVDTNEDEIREYLNSDKDLSSNQDDFDYCFMFIISIASN 60 Query: 59 TAYLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 + YL L+ L ++E A+L + YEL ++ +V INEA+EL+K + Sbjct: 61 IERYKAEVAKYLKPGWTLDRLSKMELAILLVGCYELL-ETEQSKEVIINEAVELSKKYCD 119 Query: 117 EDSHKFVNGVLDKA 130 D++KF+NG+L++ Sbjct: 120 SDAYKFINGLLNRI 133 >UniRef50_A8YVX2 Transcription termination n=9 Tax=Lactobacillus RepID=A8YVX2_LACH4 Length = 130 Score = 91.6 bits (227), Expect = 8e-18, Method: Composition-based stats. Identities = 36/131 (27%), Positives = 64/131 (48%), Gaps = 4/131 (3%) Query: 4 AARRRARECAVQALY-SWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 + +R+ A+QA+Y + Q DVE + +A ++K + Y ++L+ GV N L Sbjct: 1 MNQHESRKVAMQAVYLANQEPDLSAEDVEAKVVATLNLKQLS-AYSKKLIEGVLENREDL 59 Query: 63 DGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 + +L LE + Q+ A++ +AL+E+ + K A+NEA+ L F Sbjct: 60 QSELTNHLKKSWRLERVSQIVVAIMEVALFEIKNSDKIDPKAAVNEALNLCDEFAEPKEK 119 Query: 121 KFVNGVLDKAA 131 F+NG+L Sbjct: 120 PFINGMLANFV 130 >UniRef50_B9Y7F7 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y7F7_9FIRM Length = 412 Score = 91.6 bits (227), Expect = 8e-18, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 44/128 (34%), Gaps = 11/128 (8%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R+ A Q L + Q Q + + + + ++ GV + L + Sbjct: 5 RKRAWQGLNAILNEGQYANLWLRQH--GQTLSEEEKRWVTAVIYGVLRHREPLRWQWRDL 62 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK-FVNGVLD 128 + + E +L +++Y+L +N+A+EL S K VN VL Sbjct: 63 VRNVPE---PSVAVLLDMSVYQLFYLDKGAEYAIVNDAVELC-----PRSKKGLVNAVLR 114 Query: 129 KAAPVIRP 136 + Sbjct: 115 QLLRRGPK 122 >UniRef50_D0J9N1 Antitermination protein NusB n=2 Tax=Blattabacterium RepID=D0J9N1_BLASP Length = 312 Score = 91.2 bits (226), Expect = 8e-18, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 1/100 (1%) Query: 41 KDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVP 99 D + + L + + L+ + +E + ++ +L++A+ E ++P Sbjct: 204 NDENKKFIVSLYRNTIFHKREFNELISNISNNWNIERIAIIDLIILQMAICEFLYFPNIP 263 Query: 100 YKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 K +NE IE+AK F + S F+NG+LD+ ++ N K Sbjct: 264 PKATMNEYIEIAKIFCMDKSKTFINGILDQVFKLLHKNNK 303 >UniRef50_C7NCF2 NusB antitermination factor n=4 Tax=Fusobacteriaceae RepID=C7NCF2_LEPBD Length = 138 Score = 91.2 bits (226), Expect = 9e-18, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 71/136 (52%), Gaps = 3/136 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVD-VLYFRELLAGVATNTAYL 62 RR RE + L+ +L N+I + E+++K D + + R + + N L Sbjct: 1 MTRREIREEIFKLLFEHELIDNNIEKRINDVINEENLKKNDEIDFLRSYVTEIIENENIL 60 Query: 63 DGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 +K L E LG +EK +L+I+ YE++ ++ Y++AINE +E+AK + D+ + Sbjct: 61 IEKIKNILDGWTYERLGTIEKVLLKISFYEIT-IKNIGYEIAINEVLEIAKKYSYNDTKE 119 Query: 122 FVNGVLDKAAPVIRPN 137 F+NG+L K I+ Sbjct: 120 FLNGILAKLVKDIKEE 135 >UniRef50_Q87AR1 Ribosomal RNA small subunit methyltransferase B n=20 Tax=Gammaproteobacteria RepID=RSMB_XYLFT Length = 431 Score = 91.2 bits (226), Expect = 9e-18, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 39/124 (31%), Gaps = 2/124 (1%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R A + L + L + D + V + + + Sbjct: 8 RVVAARVLALVVDQGRSLKTELAAALPTLE-DVRDRALVEAICFAVLRRRPVYEAALTRW 66 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 L+R L + +L + +L VP A++ ++ + G FVN VL + Sbjct: 67 LARPLGRGDAQLRGLLMVGFAQLDVL-KVPPYAALSATVDACRVLGWPHRVSFVNAVLRR 125 Query: 130 AAPV 133 A Sbjct: 126 AQRE 129 >UniRef50_A3HY11 Putative N utilization substance protein n=1 Tax=Algoriphagus sp. PR1 RepID=A3HY11_9SPHI Length = 394 Score = 91.2 bits (226), Expect = 1e-17, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 62/137 (45%), Gaps = 6/137 (4%) Query: 5 ARRRARECAVQALY-SWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 + R A + L + Q+ ++ + + + D +F+ + N A Sbjct: 250 NKSVVRSLASKILKNAAQVDGSETNPLPEIAMNW----EEDKEFFQNIFNFTLENEAESK 305 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 L+ ++ L +K ++ +AL E+ +P KV+INE I+++K++ S +F Sbjct: 306 ALISQKTKNWDIDRLAFTDKIIISMALAEMKNFPSIPVKVSINEYIDISKTYSTPKSKQF 365 Query: 123 VNGVLDKAAPVIRPNKK 139 VNG+LD + + + + Sbjct: 366 VNGLLDVMSKELTESGQ 382 >UniRef50_Q88RR3 Ribosomal RNA small subunit methyltransferase B n=10 Tax=Gammaproteobacteria RepID=RSMB_PSEPK Length = 436 Score = 91.2 bits (226), Expect = 1e-17, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 41/117 (35%), Gaps = 3/117 (2%) Query: 20 WQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQ 79 + + L V + D ++L G A LD L L + + Sbjct: 14 VLSGKASLNSSLPAQLD--KVDERDRGLTQDLAFGTARWQPRLDLLAAQLLQKPFKAADA 71 Query: 80 VEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRP 136 +A+L + LY+L + +P AI E + A + +N VL +A Sbjct: 72 DVQALLLVGLYQLFY-TRIPAHAAIGETVGCADKLKKPWAKGLLNAVLRRAQREGEE 127 >UniRef50_C2M6F3 NusB family protein n=1 Tax=Capnocytophaga gingivalis ATCC 33624 RepID=C2M6F3_CAPGI Length = 310 Score = 90.8 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 1/110 (0%) Query: 31 EYQFLAEQDVKDVDVLYFRELLA-GVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIAL 89 FL D + ELL V + A+ L++ + + +++ ++++ + Sbjct: 192 VADFLPPLFKDKSDKDFAIELLRKAVLNDEAFHKYLVEKTPKWDADRIAELDAIMIKMGI 251 Query: 90 YELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 E K +P KV +NE +E+AK + S FVNG+LD + + K Sbjct: 252 AEFLKFPSIPVKVTLNEYVEIAKEYSTPKSSVFVNGILDTLSKDFQQEGK 301 >UniRef50_D1RHX8 Ribosomal RNA small subunit methyltransferase B n=1 Tax=Legionella longbeachae D-4968 RepID=D1RHX8_LEGLO Length = 458 Score = 90.8 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 40/127 (31%), Gaps = 10/127 (7%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R A+ L + + ++ + + +E+ G + L + Sbjct: 36 RLHALYILTHLLVEKTPLSQLMASSAEVSPM-------TKEICFGFCRHYFRLQAIANCL 88 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 + + +E+ L I +Y+L +P + E + L + + VN VL Sbjct: 89 IHKKPKEIELWV--ALLIGIYQLHYM-KLPDYAVVKETVALLEKIKKGWAKGLVNAVLRN 145 Query: 130 AAPVIRP 136 Sbjct: 146 FCRQHDE 152 >UniRef50_B3PGY5 Ribosomal RNA small subunit methyltransferase B n=2 Tax=Gammaproteobacteria RepID=B3PGY5_CELJU Length = 432 Score = 90.4 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 49/130 (37%), Gaps = 3/130 (2%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R A Q L Q ++ + + + D ++L GV L Sbjct: 5 RAAATQVLAQILRQQGSLSSLLPAM--SVKIAEQDRPLLQQLCFGVCRYYPQLQAYTSLL 62 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 L + L +A+L + LY+L + +P AI E +E+ + + K VNGVL + Sbjct: 63 LDKPLRAKDSDVQALLLLGLYQLIH-TRIPDHAAIGETVEVTRDIKKAWATKLVNGVLRQ 121 Query: 130 AAPVIRPNKK 139 + + Sbjct: 122 FQRDQQTLGE 131 >UniRef50_B9QVY4 Ribosomal RNA small subunit methyltransferase B n=2 Tax=Alphaproteobacteria RepID=B9QVY4_9RHOB Length = 468 Score = 90.4 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 45/132 (34%), Gaps = 5/132 (3%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQD---VKDVDVLYFRELLAGVATNTAYLDGL 65 AR+ A L + + + + D R + + + + Sbjct: 37 ARKVAADILGNVVHKKRPLDGELDMASGHSGFRALAANDRALVRAIAGAALRHRGEITEI 96 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAK-SFGAEDSHKFVN 124 + L R + E +L +A+ ++ D+P + A++ A++ A A VN Sbjct: 97 LGRLLDRDIPEKTGRVLDILHVAIAQMQFL-DIPDRAAVSLAVDHASMDRRARPYKGLVN 155 Query: 125 GVLDKAAPVIRP 136 GVL + Sbjct: 156 GVLRRLGRERDE 167 >UniRef50_Q6MAQ2 Putative transcription termination factor, nusB n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MAQ2_PARUW Length = 154 Score = 90.4 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 1/106 (0%) Query: 34 FLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY-LSRLLEELGQVEKAVLRIALYEL 92 + E + +V +E + + A +D + LS + V K +LR+ ++EL Sbjct: 5 IMNELSISKKNVRLAQEKVQKIVVQLAEIDSKISSVSLSYHFNRIQTVTKNILRLGVFEL 64 Query: 93 SKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 +D+P KV I EAI L++ F +S FVN +LD+ + + Sbjct: 65 FFETDIPQKVVIAEAIRLSRKFSTPESASFVNALLDQLYQKSKGEE 110 >UniRef50_Q8RII1 N utilization substance protein B homolog n=7 Tax=Fusobacterium RepID=NUSB_FUSNN Length = 153 Score = 90.4 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 35/138 (25%), Positives = 66/138 (47%), Gaps = 10/138 (7%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAEQD--------VKDVDVLYFRELLAGVATN 58 R ARE + ++ + +++ +++ F + + + + + + G+A N Sbjct: 17 RLAREEVFKLVFGVEATESASEELKQAFDIYLQNSEELIGTLNENQLEFLKSSIDGIAKN 76 Query: 59 TAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 + ++K E +G VE+A+L +A YE + P +V NE IELAK +G E Sbjct: 77 YDNIKDIIKKNTQNWAYERIGVVERALLIVATYEFIF-KNAPIEVIANEIIELAKEYGNE 135 Query: 118 DSHKFVNGVLDKAAPVIR 135 S++FVNG+L + Sbjct: 136 KSYEFVNGILANIEKSKK 153 >UniRef50_C0XST3 Transcription antitermination protein NusB n=1 Tax=Corynebacterium lipophiloflavum DSM 44291 RepID=C0XST3_9CORY Length = 188 Score = 90.0 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 55/131 (41%), Gaps = 6/131 (4%) Query: 14 VQALYSWQLSQNDIADVEYQFLAEQDVKD----VDVLYFRELLAGVATNTAYLDGLMKPY 69 V L+ + D V + Y RE++ GVA +D ++ + Sbjct: 18 VDILFEAETRDIDPVAVVEDRIELAQDPQNAVAPIAEYTREIITGVAEKLDDIDDAVEQF 77 Query: 70 L--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 L L L V++ +LR+A +E+ DV +AI+ A+ +A+ + + +++ VL Sbjct: 78 LSQDWELGRLPAVDRQILRVAAWEILFNDDVAAPIAISNALGMAEEYAGHAAPPYIHAVL 137 Query: 128 DKAAPVIRPNK 138 D + + Sbjct: 138 DDVVKTLPVPE 148 >UniRef50_Q0BRA0 16S rRNA m(5)C 967 methyltransferase n=12 Tax=Acetobacteraceae RepID=Q0BRA0_GRABC Length = 452 Score = 90.0 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 7/122 (5%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R+ A + L + + + ++ D L A +D +++P+ Sbjct: 36 RDAACRLLNAVLEQHRSLEEALNAL---PPMEPRDRAAAHRLAAATLRRLGTIDAVLEPF 92 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 L R + +LR+ L D P A+ A++LA+ +N VL K Sbjct: 93 LRREP---PAPVRDILRLGAAGLLFL-DTPPHAAVGTAVDLARQLRLAPFTGLINAVLRK 148 Query: 130 AA 131 A Sbjct: 149 VA 150 >UniRef50_C1A8F7 Antitermination protein NusB n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A8F7_GEMAT Length = 157 Score = 90.0 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 46/130 (35%), Positives = 69/130 (53%), Gaps = 3/130 (2%) Query: 7 RRARECAVQALYSWQLSQND-IADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R R A+QALY+ L + + + + + L+ L+A VA A LD Sbjct: 26 TRGRARALQALYAADLRDLTQVKRIATTVFDDLAIDPAERLFASRLIATVADRGAVLDAA 85 Query: 66 MKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + + LE LG +E++VLR+A EL+ R + P KV + EA+ LA+ +G E S +FVN Sbjct: 86 LVEVTANWRLERLGAIERSVLRLAAAELA-REETPVKVVLQEAVHLAERYGTERSARFVN 144 Query: 125 GVLDKAAPVI 134 GVLD A + Sbjct: 145 GVLDAYARRL 154 >UniRef50_A9IZD6 SUN-family protein n=5 Tax=Bartonella RepID=A9IZD6_BART1 Length = 454 Score = 90.0 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 51/136 (37%), Gaps = 9/136 (6%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQD---VKDVDVLYFRELLAGVATNTAYLDGLM 66 R+ V+ L + ++ + + D L R +L + + + Sbjct: 20 RQVCVRLLGAVVDRYTPLSGLTDNEHGHPQYLKLSQRDRLLCRAILTTSLRHRGQITAAL 79 Query: 67 KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF---V 123 +L R L + +L I++ ++ D+P AI+ A+ +AK +F V Sbjct: 80 SCFLERPLPSQALSLQHLLHISVAQILYL-DIPDHAAIDLAVRVAK--FDPRMRRFSGVV 136 Query: 124 NGVLDKAAPVIRPNKK 139 N +L A P ++ Sbjct: 137 NALLRNVAREAAPLRQ 152 >UniRef50_A6GX17 N utilization substance protein B homolog (NusBprotein) n=7 Tax=Flavobacteriales RepID=A6GX17_FLAPJ Length = 303 Score = 89.7 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 1/100 (1%) Query: 41 KDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVP 99 D + L VA N L + + +++ +L++A+ E K +P Sbjct: 195 DTEDKEFVGNLFRKVALNDQQLAKEFADKTPNWEADRIAEIDTIILKMAICEFLKFPSIP 254 Query: 100 YKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 KV INE +ELAK + S F+NG+LD N K Sbjct: 255 VKVTINEYLELAKEYSTPKSSIFINGILDNLVKEFESNDK 294 >UniRef50_C8PZ41 Ribosomal RNA small subunit methyltransferase B n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PZ41_9GAMM Length = 450 Score = 89.7 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 40/124 (32%), Gaps = 6/124 (4%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R V L Q ++ V + D + ELL G L + + Sbjct: 11 RAKVVATLERIQQGES---LSSLLDPLLNQVSEKDKGFAHELLLGTLRQWWALARIGESL 67 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 + E + A L I LY+L D P AI E +E K +N +L K Sbjct: 68 IEH--EVTDKGVWAALNIGLYQLLYM-DTPDYAAIGETVEAVKQLDKGYGAGLINAILRK 124 Query: 130 AAPV 133 Sbjct: 125 VQKN 128 >UniRef50_B9JUI9 Sun protein n=44 Tax=Rhizobiales RepID=B9JUI9_AGRVS Length = 493 Score = 89.7 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 48/133 (36%), Gaps = 5/133 (3%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFL---AEQDVKDVDVLYFRELLAGVATNTAYLDG 64 AR A + L + + + + A + + D R +L ++ Sbjct: 53 EARMAASRLLAAVIDRKTSLDGMMDGDHGNPAYAALSEADRGLVRAILNTSLRFLPRIEA 112 Query: 65 LMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELA-KSFGAEDSHKFV 123 ++ L L + + L +A ++ DVP A++ A+E A + + K V Sbjct: 113 MLARLLDAPLPDGARALYHSLIVAAAQMVYL-DVPDHSAVDLAVEQANRDPRSRRFAKLV 171 Query: 124 NGVLDKAAPVIRP 136 N VL + + Sbjct: 172 NAVLRRLGREKQA 184 >UniRef50_B2UNF0 NusB antitermination factor n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UNF0_AKKM8 Length = 294 Score = 89.7 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 1/114 (0%) Query: 24 QNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSR-LLEELGQVEK 82 + + + + L + LD + L E + +++ Sbjct: 180 DRPSLAEIKKVVEAGRDAEELYREAKTLGEDILRRRDGLDAAIDSTLENYSPERVSAIDR 239 Query: 83 AVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRP 136 A+LR+ YEL R D+P + I+EAI L++ F + +S +F+NGVL + RP Sbjct: 240 AILRLGAYELLHRKDLPAPIVISEAIRLSERFSSAESPRFINGVLAGISKTGRP 293 >UniRef50_B4U865 NusB antitermination factor n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U865_HYDS0 Length = 139 Score = 89.7 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 3/132 (2%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQF--LAEQDVKDVDVLYFRELLAGVATNTAYLD 63 R RARE A ++LY+W +S +I+ + + +++ +K Y + N +D Sbjct: 5 RARAREIAFRSLYAWDISGGEISIISQEIINMSKPPLKKDSQKYTLLITKKFGENIENID 64 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + YL L++LG +EKA+LR A EL AI + IE+A ++G + + F Sbjct: 65 KKIASYLENWNLDDLGSIEKAILRTAFTELLYIKPKKNIQAIIDYIEIASNYGNKKTPSF 124 Query: 123 VNGVLDKAAPVI 134 +NG+L K + I Sbjct: 125 INGILSKLSKDI 136 >UniRef50_C8W755 NusB/RsmB/TIM44 n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8W755_ATOPD Length = 463 Score = 89.3 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 3/124 (2%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR+ A QA + + + + D + ++ D + L G LD +K Sbjct: 7 ARKVAYQAFFECRRNNLCVRDYLRESKDFSELSAQDKAFATRLALGATLTKGKLDEALKN 66 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 +L + L + RIA++E+ + AI++ +EL KS + S N VL Sbjct: 67 HLKSGI-HLEPKVQDAFRIAVFEVLYL-ETRRDAAISQGVELVKSVS-KRSSGLANAVLR 123 Query: 129 KAAP 132 K + Sbjct: 124 KISE 127 >UniRef50_Q7MW39 NusB family protein n=2 Tax=Porphyromonas gingivalis RepID=Q7MW39_PORGI Length = 364 Score = 89.3 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 56/130 (43%), Gaps = 6/130 (4%) Query: 11 ECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL 70 E ++ + + + A + + D ++ LL N +++ L Sbjct: 237 EFVLKTIRRIEQDTDPSAILLPAYKE-----KDDAVFGTTLLRNAIINGQEYRHIIRENL 291 Query: 71 SRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 ++ + ++ ++++A+ EL ++P V INE I+L+K F S FVNG+LD Sbjct: 292 INWEVDRIADMDMLIMQLAIAELLHFPNIPVLVTINEYIDLSKLFSTPKSGTFVNGLLDA 351 Query: 130 AAPVIRPNKK 139 +R K Sbjct: 352 VVKSLREKGK 361 >UniRef50_Q2JHC7 N utilization substance protein B homolog n=3 Tax=Bacteria RepID=NUSB_SYNJB Length = 291 Score = 89.3 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 32/92 (34%), Positives = 53/92 (57%), Gaps = 1/92 (1%) Query: 41 KDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVP 99 Y +LL + T+ +D ++ L L+ +G++E+ +LR+A+ E+ + P Sbjct: 179 SQEVRAYALQLLTALRTHKEAIDARLQKALVGWQLQRVGRIERDILRLAVVEMEILASSP 238 Query: 100 YKVAINEAIELAKSFGAEDSHKFVNGVLDKAA 131 KVAINEA+ELAK +G ++ FVNGVL + Sbjct: 239 VKVAINEAVELAKKYGDPEAAAFVNGVLRRVV 270 >UniRef50_C9RK88 Fmu (Sun) domain protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RK88_FIBSS Length = 419 Score = 89.3 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 36/128 (28%), Positives = 55/128 (42%), Gaps = 17/128 (13%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 RE A + L WQ + F+ E + + EL GV YL+ +K Sbjct: 5 REEAFRVLLLWQRDGS--------FIKESGLSP----FAMELALGVCRRHLYLEYFVKSL 52 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG-AEDSHKFVNGVLD 128 +L + +L + L+++ DVP AIN+++ELAKS E + + VN VL Sbjct: 53 TKKLPSLEA---RVILEMGLFQMFFM-DVPDYAAINDSVELAKSANLGESTARLVNAVLR 108 Query: 129 KAAPVIRP 136 A P Sbjct: 109 TARRQGEP 116 >UniRef50_C6WZZ6 Transcription termination protein NusB n=2 Tax=Flavobacteriaceae RepID=C6WZZ6_FLAB3 Length = 301 Score = 88.9 bits (220), Expect = 4e-17, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 1/98 (1%) Query: 41 KDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVP 99 + D + R LL + + + L +E + V+K +L A+ EL P Sbjct: 204 DEDDREFARRLLKDTLNHWEESEKKLVGRLENWDIERVSLVDKIILVTAITELDYFPLTP 263 Query: 100 YKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPN 137 +V INE IE++K F + S+ F+NG+LDK N Sbjct: 264 ARVVINEYIEISKVFSTDRSNIFINGILDKYTKDFNRN 301 >UniRef50_Q651X9 Os09g0477900 protein n=3 Tax=Magnoliophyta RepID=Q651X9_ORYSJ Length = 570 Score = 88.9 bits (220), Expect = 5e-17, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 53/140 (37%), Gaps = 19/140 (13%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQD----------------VKDVDVLYFRELLA 53 R A L + + + + + + + + + D+ ++A Sbjct: 105 RAVAAVRLLRIEKGKAFVDLLNEKGNSSGENEMSYVERTLGFSIRCLDNRDIRLVTVIVA 164 Query: 54 GVATNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELA 111 G YLD L+ ++ E+ + +LRI +E+ K +VP A++E + LA Sbjct: 165 GTVRWKRYLDYLIMSLCSEEKVFREMEPLLLQILRIGFFEILKL-NVPAYAAVDENVRLA 223 Query: 112 KSFGAEDSHKFVNGVLDKAA 131 K + VN +L K Sbjct: 224 KVALRPGAGNLVNAILRKLL 243 >UniRef50_Q9LK54 Similarity to SUN and FMU proteins n=3 Tax=Embryophyta RepID=Q9LK54_ARATH Length = 531 Score = 88.5 bits (219), Expect = 6e-17, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 3/92 (3%) Query: 48 FRELLAGVATNTAYLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAIN 105 +++ G YLD L+ R + + +LRI +YE+ KR D+P ++ Sbjct: 120 VTDVVGGTIRWRRYLDHLIGSLCHNERTFRNMEPLLLQILRIGVYEIIKR-DMPPYAVVD 178 Query: 106 EAIELAKSFGAEDSHKFVNGVLDKAAPVIRPN 137 E + LAK + FVNG+L K + + Sbjct: 179 ENVRLAKVALRPGAGDFVNGILRKLVSLKEKD 210 >UniRef50_C9M539 Transcription antitermination factor NusB n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M539_9BACT Length = 165 Score = 88.1 bits (218), Expect = 8e-17, Method: Composition-based stats. Identities = 36/144 (25%), Positives = 57/144 (39%), Gaps = 21/144 (14%) Query: 10 RECAVQALYSWQ--------------------LSQNDIADVEYQFLAEQDVKDVDVLYFR 49 R AVQAL++ +++ + + D Sbjct: 18 RFLAVQALFALDSSADPAGTLRLLADDWELLGFHGDELEIDDETASQLPAISAEDCGAAV 77 Query: 50 ELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAI 108 + V ++ +D L+ P L L L V++A+LR+ +E V VA +EA+ Sbjct: 78 QWAERVWSHLDQVDSLIAPCLRGWRLPRLDGVDRAILRLCFFESRVEGSVNDAVAASEAV 137 Query: 109 ELAKSFGAEDSHKFVNGVLDKAAP 132 LAK+ G E S KFVNGV+ Sbjct: 138 ILAKAMGGEQSAKFVNGVIGSIMR 161 >UniRef50_Q0G330 Putative uncharacterized protein n=5 Tax=Rhizobiales RepID=Q0G330_9RHIZ Length = 473 Score = 88.1 bits (218), Expect = 9e-17, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 49/137 (35%), Gaps = 9/137 (6%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQ---DVKDVDVLYFRELLAGVATNTAYLDG 64 +AR+ A + L + Q + + ++ D + +L L Sbjct: 44 KARQVAAKLLGAVIEQQTSLDGLTDPDHGHPHFRQLEARDQGLVKAILLTALRFRGTLTQ 103 Query: 65 LMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF-- 122 + L R L +L +A ++ DVP A++ A+ A++ + +F Sbjct: 104 EIAARLDRPLPSNATALNHLLHVAAAQIRFL-DVPDSAAVDLAVTAAEA--DPRTRRFKG 160 Query: 123 -VNGVLDKAAPVIRPNK 138 VN VL + + + Sbjct: 161 VVNAVLRRMTRELGGAE 177 >UniRef50_A3UKE9 RRNA methyltransferase RsmB n=1 Tax=Oceanicaulis alexandrii HTCC2633 RepID=A3UKE9_9RHOB Length = 450 Score = 87.7 bits (217), Expect = 9e-17, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 40/127 (31%), Gaps = 2/127 (1%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R A+ A+ + + ++ D + R + + V LD + Sbjct: 27 RAVALGAVEGVLAKAVPLDGALAGRPEWKRMEPRDRAFARAIASAVIRRPIALDAALMQV 86 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIEL-AKSFGAEDSHKFVNGVLD 128 L + L + +LR E D P A++ + L A+ N VL Sbjct: 87 LDKPLPDEEVRAHLILRCGAAERLIL-DTPAHAAVDAWVSLMAQDRHTARFKNLANAVLR 145 Query: 129 KAAPVIR 135 + + Sbjct: 146 RVVDQGK 152 >UniRef50_Q0FEH7 Ribosomal RNA small subunit methyltransferase B, putative n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=Q0FEH7_9RHOB Length = 430 Score = 87.7 bits (217), Expect = 9e-17, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 53/128 (41%), Gaps = 6/128 (4%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQ-DVKDVDVLYFRELLAGVATNTAYLDGLMK 67 ARE AV+ L++ L + + D+ + D++ + + L N +D +++ Sbjct: 8 AREAAVRLLHAVLLERRLLIDIVNGEDSLLIDLEPSERARAQSLAMTTLRNLGPIDFVLQ 67 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF-GAEDSHKFVNGV 126 YL++ + +LR++ E+ + A++ A+ +AK N V Sbjct: 68 KYLTK---QTPFALLNILRVSAAEML-VDGIAAHAAVDSAVTMAKRRHKTAHLKDLANAV 123 Query: 127 LDKAAPVI 134 L K A Sbjct: 124 LRKVASEG 131 >UniRef50_B0MX54 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MX54_9BACT Length = 312 Score = 87.3 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 1/100 (1%) Query: 41 KDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVP 99 D D + + L N ++ + +E + ++ ++ A+ EL +P Sbjct: 204 SDEDAEFVKTLFEKTLINYNERLEYIEKFTRNWDVERIVFMDNLIMATAITELVSFPSIP 263 Query: 100 YKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 KV ++E I++AK + S F+NGVLDK + K Sbjct: 264 VKVTLDEYIDIAKFYSTPGSSTFINGVLDKIVEALTEEGK 303 >UniRef50_D2MQ58 Transcription antitermination factor NusB n=1 Tax=Bulleidia extructa W1219 RepID=D2MQ58_9FIRM Length = 124 Score = 87.0 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 5/128 (3%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +R RE AV +LY++ DI + + + D YF ++ + Sbjct: 1 MSRSVQREKAVLSLYAYLSLPRDIHSIMED--SFGSLDKAD-PYFIRVVENAQEHIQEYT 57 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + L + LG +EKA+L I E +V + I+EA+ELAK++G DS++ Sbjct: 58 NYINQVLENWTFDRLGTIEKAILLIGCAEF-SLKEVAAVIIIDEAVELAKTYGEADSYRL 116 Query: 123 VNGVLDKA 130 +N VLD Sbjct: 117 INNVLDVI 124 >UniRef50_Q1IY91 rRNA methyltransferase, sun family protein n=3 Tax=Deinococcus RepID=Q1IY91_DEIGD Length = 427 Score = 86.6 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 42/130 (32%), Gaps = 5/130 (3%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR AV+ L + A LAE + D L+ G L+ + P Sbjct: 11 ARALAVRVLTRVLAGETFAAPALDAALAEARLPARDAGLATHLVYGTLRFAPMLEAALAP 70 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 L +A+L +E P A++E + +A+ VN VL Sbjct: 71 LLREKTHSKT---RALLLAGAFEKLVL-GTPPHAALSEYVNVARMARLAP-PGLVNAVLR 125 Query: 129 KAAPVIRPNK 138 + + Sbjct: 126 RVERPAETEE 135 >UniRef50_B4WQD6 Transcription antitermination factor NusB, putative n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WQD6_9SYNE Length = 281 Score = 86.6 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 2/89 (2%) Query: 42 DVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPY 100 D Y ELL + +D + + + + L +V++ +LR+A+ E+ DVP Sbjct: 189 DDIRGYACELLGNWISYQKAIDAQLNEAMEKWSIRRLARVDRDILRLAMIEIVYM-DVPK 247 Query: 101 KVAINEAIELAKSFGAEDSHKFVNGVLDK 129 KVAI+EAIE+AK + ED ++F+NGVL + Sbjct: 248 KVAIDEAIEMAKRYSDEDGYRFINGVLRR 276 >UniRef50_C8NU84 N utilization substance protein B family protein (Protein NusB) n=1 Tax=Corynebacterium genitalium ATCC 33030 RepID=C8NU84_9CORY Length = 217 Score = 86.6 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 57/130 (43%), Gaps = 6/130 (4%) Query: 14 VQALYSWQLSQNDIADVEYQFLAEQDVK----DVDVLYFRELLAGVATNTAYLDGLMKPY 69 V L+ + D + A Y RE++AG A +D ++ + Sbjct: 18 VDILFEAETRDVDPVAIVEDRAALAGDPTNAVAPVADYTREIIAGAAAALDEIDNAIERF 77 Query: 70 L--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 L + L + V++A+LR+A +E+ +V ++I A+E++ + +++ +++ VL Sbjct: 78 LSDNWELNRIPAVDRAILRVATWEILYNDEVEPPISIANAMEMSTEYAGDNASPYIHAVL 137 Query: 128 DKAAPVIRPN 137 D N Sbjct: 138 DDIIQAHASN 147 >UniRef50_D1Y3T9 Transcription antitermination factor NusB n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y3T9_9BACT Length = 174 Score = 86.2 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 1/81 (1%) Query: 55 VATNTAYLDGLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKS 113 V +D L++ Y E + V++ ++R+ALYE VP VA++EA+ LAK Sbjct: 91 VRRALPEIDALIETYSTEWKTERMSLVDRTIIRLALYEAVIAKKVPPGVALSEAVRLAKE 150 Query: 114 FGAEDSHKFVNGVLDKAAPVI 134 +G++DS +FVNGVL + + Sbjct: 151 YGSDDSSRFVNGVLARIVKAL 171 >UniRef50_Q5ZSC6 rRNA methyltransferase (SUN protein) n=5 Tax=Gammaproteobacteria RepID=Q5ZSC6_LEGPH Length = 427 Score = 86.2 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 48/135 (35%), Gaps = 15/135 (11%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK R A++ L + S+ +++ ++ Q++ + +E+ G + Sbjct: 1 MKVND----RFNALKILTALIESRKNLS----YLMSPQEISPM----TKEICYGFCRHYF 48 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 L + +++ + VL I +Y+L + P + E + L + Sbjct: 49 RLQSIADTLINKRPK--DNELWIVLLIGIYQLQYMNK-PDYAVVKETVSLLGQVKKSWAK 105 Query: 121 KFVNGVLDKAAPVIR 135 VN VL Sbjct: 106 GLVNAVLRNFCRRKD 120 >UniRef50_UPI000185C78C antitermination protein NusB n=1 Tax=Capnocytophaga sputigena ATCC 33612 RepID=UPI000185C78C Length = 302 Score = 85.8 bits (212), Expect = 3e-16, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 1/119 (0%) Query: 21 QLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQ 79 + E F + + +LL A N A L ++ L+ E + Sbjct: 174 EFKNLRPNPPEKYFTPSLYNNSEEKEFLVDLLKKTALNDAKLKSFVEDKLTNWDKERVAV 233 Query: 80 VEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 ++ +L++A+ E +P KV INE +ELAK + S F+NGVL+ + + Sbjct: 234 LDLIILKMAICEFLHFPSIPVKVTINEYLELAKEYSTAKSSLFINGVLNVVHKELSEKE 292 >UniRef50_Q5SK01 Sun protein (RNA methyltransferase) n=4 Tax=Thermus RepID=Q5SK01_THET8 Length = 398 Score = 85.8 bits (212), Expect = 4e-16, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 45/137 (32%), Gaps = 8/137 (5%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 M+ R AV L + + L + D Y L+ G Sbjct: 1 MRAGTP---RALAVAVLLEVDRGGR-AQLLLDRALRRSPWPERDRAYATFLVYGALRRLR 56 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD L+ P L R E L + +LR+ E P ++ +E AK Sbjct: 57 LLDHLLAPLLPRP-EGLPPEVRWILRLGALE--WLEGKPDHARVSPWVEEAKRRY-PGLA 112 Query: 121 KFVNGVLDKAAPVIRPN 137 VN VL + AP P Sbjct: 113 GLVNAVLRRLAPREAPE 129 >UniRef50_C7MCJ5 Transcription antitermination factor NusB n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MCJ5_BRAFD Length = 178 Score = 85.8 bits (212), Expect = 4e-16, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 57/132 (43%), Gaps = 2/132 (1%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 + R R R A+ L+ + D+ DV + L + + R L+ A + Sbjct: 40 RLHGRSRERIRAIDVLFEADAKRIDVLDVLQERLRRTAAQTPLPQWSRTLVELYAPHAVD 99 Query: 62 LDGLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYK-VAINEAIELAKSFGAEDS 119 +D + + L + V++A+LR+ E+ + + I E ++A+ +DS Sbjct: 100 IDEDLATHSRDWPLHRMPAVDRAILRLGAAEVLYGEEESRRGTIIGEYTKIAEVLSTDDS 159 Query: 120 HKFVNGVLDKAA 131 +FVNG+L + Sbjct: 160 PRFVNGLLQRLV 171 >UniRef50_Q2GKH0 N utilization substance protein B n=5 Tax=Anaplasma RepID=Q2GKH0_ANAPZ Length = 282 Score = 85.8 bits (212), Expect = 4e-16, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 59/141 (41%), Gaps = 10/141 (7%) Query: 6 RRRARECAVQALYSWQLSQ---NDIADVEYQFLAEQ---DVKDVDVLYFRELLAGVATNT 59 + AR AVQ Y+ +D+ D+ Q D+ VD ++L + Sbjct: 19 KTSARFLAVQGAYAMMFGAYTASDLEDLLEHLCEMQEVLDLHRVDKKLLSKILGCMIEKC 78 Query: 60 AYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 +D L+ +L +E + V AV+R + EL V INE + +A + + Sbjct: 79 NEVDSLISVHLNEKWSMERINLVSLAVMRAGVCELL-CLKTSECVIINEYVGIASTVLEK 137 Query: 118 DSHKFVNGVLDKAAPVIRPNK 138 FVN +L+K A +R + Sbjct: 138 SEVNFVNAILNK-AKTVRSPE 157 >UniRef50_Q26ET0 Putative antitermination protein NusB n=1 Tax=Flavobacteria bacterium BBFL7 RepID=Q26ET0_9BACT Length = 312 Score = 85.8 bits (212), Expect = 4e-16, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 44/99 (44%), Gaps = 1/99 (1%) Query: 41 KDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVP 99 + DV + +L N ++ + + Q++ ++ +A E K + +P Sbjct: 204 DEDDVKFTMDLFRKTLFNREEFLERIEGKTPNWEQDRIAQIDLVLIMMAQCEFLKFNSIP 263 Query: 100 YKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 KV++NE +E++K + S F+NG+LD + Sbjct: 264 VKVSLNEYLEISKDYSTPKSSFFINGILDNLSKEYEKEG 302 >UniRef50_B9CK37 NusB/NOL1/NOP2/sun family protein n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CK37_9ACTN Length = 480 Score = 85.8 bits (212), Expect = 4e-16, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 3/118 (2%) Query: 19 SWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELG 78 ++ + D + + D LL G + LD ++ YL + L Sbjct: 17 QYRRKHARMRDFLRTSHRMDVLGEKDRALATRLLLGSVSAVGELDRVLASYLPKR-RHLE 75 Query: 79 QVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRP 136 + LR+A +E+ P VA+++ +E+A+ A + N +L + A + P Sbjct: 76 PKLRDALRLATFEILYL-HTPKHVAVSQGVEMARRASA-QATGLANAILRRIATDVSP 131 >UniRef50_B2VAC4 NusB antitermination factor n=2 Tax=Sulfurihydrogenibium RepID=B2VAC4_SULSY Length = 168 Score = 85.4 bits (211), Expect = 5e-16, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 71/159 (44%), Gaps = 21/159 (13%) Query: 1 MKPAARRR----------ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRE 50 MK + AR+ +++ L+++ + D+ +V +FL + Y + Sbjct: 1 MKKKNKSLKFLRKRLLKAARDLSMRILFAYDFRKEDLFNVLEEFLNTKKFSPEIKEYVLK 60 Query: 51 LLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELS---------KRSDVPY 100 ++ N+ +D ++K +L E +G +E+AVLR+ + EL + D Sbjct: 61 VVNFYNENSQEIDDIIKSHLKNWRFERIGYIERAVLRLGVSELLIIHSKEESKELKDKEI 120 Query: 101 KVAINEAIELAKSFGAED-SHKFVNGVLDKAAPVIRPNK 138 ++ + ++L + + S KFVNG+L K + N+ Sbjct: 121 RILFLDLLDLVECYTNSKLSVKFVNGILGKINKELEQNE 159 >UniRef50_C6XT54 NusB/RsmB/TIM44 n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6XT54_PEDHD Length = 316 Score = 84.6 bits (209), Expect = 8e-16, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 1/95 (1%) Query: 42 DVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPY 100 D + +L + GL+ E + ++ ++++A+ EL +P Sbjct: 207 AEDSKFVEDLFVHTLKSDKEYQGLIAERTKNWESERIALMDTILMKMAICELMNFPSIPV 266 Query: 101 KVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIR 135 KV INE ++L+K + S+ F+NG+LDK ++ Sbjct: 267 KVTINEYLDLSKDYSTPKSNSFINGILDKILGDLK 301 >UniRef50_Q3KKK7 N utilization substance protein B homolog n=9 Tax=Chlamydia RepID=NUSB_CHLTA Length = 168 Score = 84.6 bits (209), Expect = 8e-16, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 4/133 (3%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 +P +++ RE +QALY+ ++ + + E V + Y + N Sbjct: 17 RPFPKQKLRELVLQALYALEIDPEGEDSLVSLLMTEASVSKKNAAYALMFCRAIRANQPD 76 Query: 62 LDGLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSD---VPYKVAINEAIELAKSFGAE 117 LD L+ + L L +E+ +LR+ L+E + D VP + I E L K F Sbjct: 77 LDALLDATIRTTTLARLTIIERNILRMMLFEHQQNQDCCPVPVAILIAETTRLIKKFSYS 136 Query: 118 DSHKFVNGVLDKA 130 + + VL Sbjct: 137 EGSSLILAVLGSI 149 >UniRef50_C1DXN6 Transcription antitermination factor NusB n=1 Tax=Sulfurihydrogenibium azorense Az-Fu1 RepID=C1DXN6_SULAA Length = 159 Score = 84.3 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 34/145 (23%), Positives = 74/145 (51%), Gaps = 11/145 (7%) Query: 1 MKPAAR---RRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVAT 57 MK + + R+ARE ++ Y++ + D+ ++ +++ + Y +E+++ Sbjct: 1 MKQSIKNIQRQARELLLKVFYTFDQKGEPLEDILKEYTNLKEISPEVINYAKEIISFFNE 60 Query: 58 NTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDV------PYKVAINEAIEL 110 +D ++K +L + E LG +EKA+L+IA+ + K + K I + ++L Sbjct: 61 KKDKVDEMIKSHLEKWRFERLGYIEKALLKIAITDFLKLKEKGREENFMIKRIILDTLDL 120 Query: 111 AKSF-GAEDSHKFVNGVLDKAAPVI 134 + + G++ S KFVNG+L + + Sbjct: 121 VECYTGSKKSVKFVNGILGRVVREL 145 >UniRef50_Q8TGY0 tRNA/rRNA cytosine-C5-methylase n=1 Tax=Methanopyrus kandleri RepID=Q8TGY0_METKA Length = 448 Score = 84.3 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 38/122 (31%), Gaps = 4/122 (3%) Query: 12 CAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLS 71 AV+AL + I + + ++ + + + LD L+ Sbjct: 6 LAVKALVLVETRGMPIPEAVERTCRDRPID--VRRSVQAFVYETIKRRNLLDELVAAGSD 63 Query: 72 -RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 + + +LR+ E+ P + + +AK + FVN VL Sbjct: 64 AHPEDVRSPYVRQILRVGTLEMK-IWRNPPPAVTDCMVRIAKRLVGSKAGAFVNAVLRGV 122 Query: 131 AP 132 Sbjct: 123 ER 124 >UniRef50_Q5GT93 Transcription termination factor, NusB n=7 Tax=Wolbachia RepID=Q5GT93_WOLTR Length = 160 Score = 84.3 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 41/147 (27%), Positives = 62/147 (42%), Gaps = 14/147 (9%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQ----------FLAEQDVKDVDVLYFRELLAG 54 R AR AVQ YS D + E + + ++ D + +LL Sbjct: 13 KRSAARFLAVQVAYSNIFMGYDKSTFELENCGLRNYVGKLADIFECEEFDYQFLEKLLYK 72 Query: 55 VATNTAYLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAK 112 V + D +++ YL L L V ++LR+A+ EL+ D P V INE +A Sbjct: 73 VIRSGGEYDKIIEYYLHPSWSLLRLNLVSLSILRVAVCELANC-DTPAPVVINEYTNIAS 131 Query: 113 SFGA-EDSHKFVNGVLDKAAPVIRPNK 138 F+NG+LDKA ++ NK Sbjct: 132 DLLDKPSEIGFINGLLDKAKSAVKLNK 158 >UniRef50_C6P2V1 Sun protein n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P2V1_9PROT Length = 424 Score = 84.3 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 50/122 (40%), Gaps = 5/122 (4%) Query: 13 AVQALYSWQLSQNDIADVEYQFLA-EQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLS 71 A +A++ ++ V + L E + + ++L G + L ++ L Sbjct: 8 AAKAVHKVVHGGRNLTQVLSETLRKESKLTAQEKGALQDLCYGTLRYYSRLAYMLDSLLQ 67 Query: 72 RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAA 131 R + E + ++L +A+Y+L + V +++A+ AK+ + VN VL Sbjct: 68 RPVRE--PLLGSLLMVAIYQLEH-TKAGKHVIVDQAVHAAKN-TNPAASGLVNAVLRNYL 123 Query: 132 PV 133 Sbjct: 124 RR 125 >UniRef50_UPI0001C31981 NusB antitermination factor n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31981 Length = 133 Score = 83.9 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 16/128 (12%) Query: 16 ALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-L 74 ALY L+ + + A A D L+ + L Sbjct: 3 ALYQHDLTGRPLEQTLPKDAANFTRALAQAA---------LARQAEFDALISRHAEGWTL 53 Query: 75 EELGQVEKAVLRIALYELSKRSD------VPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 + + +E+++LR++L E+ D +P + AI+EAIE AK++ D+ FVNGVL Sbjct: 54 QRIAPLERSILRVSLLEMLHPGDVPAERPIPPEGAIDEAIETAKAYCGADAPGFVNGVLA 113 Query: 129 KAAPVIRP 136 RP Sbjct: 114 AILRAERP 121 >UniRef50_Q8DKS0 N utilization substance protein B homolog n=1 Tax=Thermosynechococcus elongatus BP-1 RepID=NUSB_THEEB Length = 212 Score = 83.9 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 2/97 (2%) Query: 41 KDVDVLYFRELLAGVATNTAYLDGLMKP-YLSRLLEELGQVEKAVLRIALYELSKRSDVP 99 ++ Y LL + ++ L+ + LE L Q+++A++ IA+ E+ +V Sbjct: 110 QEEVQAYAIALLRCLQRYQNEIEELVNRSMVDWQLERLTQLDRAIIEIAVVEMRYL-EVA 168 Query: 100 YKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRP 136 +VAINEAIELAK + E SH+F+NGVL + + + P Sbjct: 169 KQVAINEAIELAKRYSDEGSHRFINGVLRRISEALDP 205 >UniRef50_Q2ST59 N utilization substance protein B (NusB), putative n=4 Tax=Mollicutes RepID=Q2ST59_MYCCT Length = 132 Score = 83.9 bits (207), Expect = 2e-15, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 5/128 (3%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAE-QDVKDVDVLYFRELLAGVATNTAYLDGL 65 + R+ +QA Y +QL I + L + Q+ + +L+ L+A ++ + Sbjct: 8 SKKRKLLIQAFYKYQLLNASIDYIYQDVLDDVQNFNNKQLLFEINLIAE--KQVDLINHI 65 Query: 66 -MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + + + + V +A+L + YE+ +D P V INE + K + +KFVN Sbjct: 66 NINISSNWKWDRIPAVIRAILIVGTYEILY-TDTPKPVTINEMVNYVKEIEPDFDYKFVN 124 Query: 125 GVLDKAAP 132 VLDK Sbjct: 125 AVLDKIIK 132 >UniRef50_C1SIP0 tRNA/rRNA cytosine-C5-methylase n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SIP0_9BACT Length = 379 Score = 83.5 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 16/103 (15%), Positives = 36/103 (34%), Gaps = 7/103 (6%) Query: 34 FLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELS 93 + + +R++ + +++ + E G +A L + ++ Sbjct: 21 LREDYFEDSAEQRLYRKIYFETFRHLGFIEKCLDKL---YTEMPGPELRAALALGTCQIL 77 Query: 94 KRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRP 136 D+P A+NE++ L + + FVN VL Sbjct: 78 FMDDIPDYAAVNESVILVQM----NKRSFVNAVLRNVGRRKEE 116 >UniRef50_Q11SB2 Antitermination factor n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11SB2_CYTH3 Length = 389 Score = 83.5 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 4/114 (3%) Query: 29 DVEYQFLAEQDVK---DVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAV 84 + + + + D + EL + L+ + +E L ++ + Sbjct: 263 ETTDEMYELPSLSPNWEDDQEFMLELYKESTAFDDAAEKLITDKVQNWDIERLAFTDRII 322 Query: 85 LRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 L++AL E+ K ++P KV INE IEL+KS+ S +FVNG+LD + ++ + Sbjct: 323 LKMALTEMVKFPNIPVKVTINEYIELSKSYSTPKSKQFVNGLLDTISIDLQKSG 376 >UniRef50_D1AKD9 Fmu (Sun) domain protein n=4 Tax=Fusobacteriaceae RepID=D1AKD9_SEBTE Length = 437 Score = 83.1 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 41/120 (34%), Gaps = 4/120 (3%) Query: 16 ALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLE 75 L + + + + + ++ N ++D L++ S + + Sbjct: 11 LLDEIIAGGKYSNLQLNYYFSTKGYNKKEKSFITNIIHTTLKNLIFIDYLIEKNASNIKK 70 Query: 76 ELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIR 135 K +LRI++ + + Y + EA+E AK + FVN +L Sbjct: 71 RK---IKQLLRISVAQFLLNKESDYSGIVFEAVETAKII-NKHQTGFVNVILRNIFQKYD 126 >UniRef50_C6QJ47 Sun protein n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QJ47_9RHIZ Length = 468 Score = 83.1 bits (205), Expect = 3e-15, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 4/126 (3%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR+ AV AL+S + + DV + A +++ D + R + V N L +++ Sbjct: 39 ARDVAVSALFSVLVEKRPFDDVFAKAAAARNLAPRDRAFARLIATTVLRNRGSLQAVLRT 98 Query: 69 YLSRLL-EELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKS-FGAEDSHKFVNGV 126 YL + L E LG++E+ +L A P AI+ A++ ++ + VN V Sbjct: 99 YLEKPLPEHLGRLEQILLAAAA--QLLLIKTPPHAAISLAVDQCRADRVGKRFGNLVNAV 156 Query: 127 LDKAAP 132 L + + Sbjct: 157 LRRLSE 162 >UniRef50_P45679 Ribosomal RNA small subunit methyltransferase B n=6 Tax=Coxiella burnetii RepID=RSMB_COXBU Length = 430 Score = 82.7 bits (204), Expect = 3e-15, Method: Composition-based stats. Identities = 13/96 (13%), Positives = 32/96 (33%), Gaps = 1/96 (1%) Query: 41 KDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPY 100 + +EL G L + + L L + ++ Y+L+ ++P Sbjct: 28 NKKNQSLIQELCYGTLRWYFKLKLIAEKLLHAPLRDKDHDIFCLILTGFYQLNYL-NIPT 86 Query: 101 KVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRP 136 +N+ + A+ + +N +L + Sbjct: 87 HTIVNQTVGAAEILKKPWAKGLINKLLRRFIAEKDE 122 >UniRef50_B2SFT3 tRNA and rRNA cytosine-C5-methylase, sun protein n=17 Tax=Francisella RepID=B2SFT3_FRATM Length = 426 Score = 82.7 bits (204), Expect = 4e-15, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 48/126 (38%), Gaps = 5/126 (3%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R A + + ++ Q L + ++ + D + + L + L+ ++ Y Sbjct: 4 RAIAAKTILDILDNK-YSLLTIEQKLVKLNLLEQDKSFIKLLCYEFFRHYYSLEKIIALY 62 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 L++ + +V ++ + ++ PY INE + K + K VN +L + Sbjct: 63 LTQKTKVKAKV---LIMLGALQI-FEIKQPYYATINETVAACKVLKIIWAKKLVNRILRE 118 Query: 130 AAPVIR 135 I Sbjct: 119 MTRNIE 124 >UniRef50_O27960 Fmu and fmv protein n=1 Tax=Archaeoglobus fulgidus RepID=O27960_ARCFU Length = 437 Score = 82.3 bits (203), Expect = 4e-15, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 45/130 (34%), Gaps = 8/130 (6%) Query: 11 ECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL 70 E A + L + S+ + + +D +K L Sbjct: 15 EIAAKVLAEVERSRISVKSAVQKL--AGGFDYKVRGSVHAYSVETLKRLNAIDYFLKSTL 72 Query: 71 SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 + + L + +LRIA+YE+ V +A + A+ +A+ G VN VL K Sbjct: 73 KK-FDGLDPFTRNLLRIAVYEMKY-KGVHPALATDSAVRIARERGK---ASLVNAVLRKV 127 Query: 131 AP-VIRPNKK 139 I+ + Sbjct: 128 EKLDIQAEGR 137 >UniRef50_D0RNV5 N utilization substance protein B n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RNV5_9RICK Length = 127 Score = 82.0 bits (202), Expect = 5e-15, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 58/138 (42%), Gaps = 15/138 (10%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK R + VQ +Y + + + D KD + + +++ G Sbjct: 1 MKSGTRTKL----VQKIYEKTKNPDGVIDF---------GKDPYIRHIKKVFKGYFEQEE 47 Query: 61 YLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 L+ ++ L + L + +L+ ++YEL +P+KV IN+ +++ F D Sbjct: 48 QLNEILSRSLSAEIKQKNLDSLLNIILKTSIYELKFCEKIPFKVVINQYLDVTAQFYGND 107 Query: 119 SHKFVNGVLDKAAPVIRP 136 + VNGVLD A + Sbjct: 108 QKRLVNGVLDNVAKSLNS 125 >UniRef50_Q9Z6S0 N utilization substance protein B homolog n=5 Tax=Chlamydophila RepID=NUSB_CHLPN Length = 160 Score = 82.0 bits (202), Expect = 5e-15, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 58/138 (42%), Gaps = 1/138 (0%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 K +++ RE +Q LY+ ++ + + +++ V VL + + Sbjct: 18 KEFPQQKMREIILQMLYALDMAPSAEDSLVPLLMSQTAVSQKHVLVALNQTKSILEKSQE 77 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD ++ L + L VEK VLR+ L+E + + I EAI L K F ++ Sbjct: 78 LDLIIGNALKNKSFDSLDLVEKNVLRLTLFEHFYSPPINKAILIAEAIRLVKKFSYSEAC 137 Query: 121 KFVNGVLDKAAPVIRPNK 138 F+ +L+ N+ Sbjct: 138 PFIQAILNDIFTDSSLNE 155 >UniRef50_B7J3C2 Sun protein n=2 Tax=Acidithiobacillus ferrooxidans RepID=B7J3C2_ACIF2 Length = 434 Score = 82.0 bits (202), Expect = 6e-15, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 41/126 (32%), Gaps = 6/126 (4%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R+ A+ L S + + D + L+ G + L Sbjct: 20 RKAAITVLRGVD-SGQTVDAALLPV----SLTGTDRATLQWLVLGTLREFLSVQALSAKL 74 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 L + E +L +AL+EL P +N+ +E+ ++ + +N VL + Sbjct: 75 LRKPWREEDADLGFLLSLALFELRHGQR-PAFAVVNDWVEMTEAVKKPWARGLMNAVLRR 133 Query: 130 AAPVIR 135 Sbjct: 134 YLRERE 139 >UniRef50_D1AVZ4 NusB antitermination factor n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AVZ4_STRM9 Length = 133 Score = 81.6 bits (201), Expect = 7e-15, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 59/134 (44%), Gaps = 2/134 (1%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +R R + L+ ++ +DI + + L + + + L N + + Sbjct: 1 MTQREVRNEIFKILFEHEVVNSDIIARKDEVLETLKISNSKREFLENYLNNFMLNESEII 60 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 +K + L EK +L++A +E+ V +++ INEA+EL+K +G E + F Sbjct: 61 EKIKEKIKGWTFSRLATPEKVILKMAFFEILF-EKVGHEIVINEAVELSKVYGDEKTKTF 119 Query: 123 VNGVLDKAAPVIRP 136 +NG+L I Sbjct: 120 INGILADLIKDIDK 133 >UniRef50_C8NZM3 N utilization substance protein B family protein (Protein NusB) n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZM3_ERYRH Length = 134 Score = 81.6 bits (201), Expect = 7e-15, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 11/135 (8%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLY-----FRELLAGVATN 58 +R R+ A+ A+Y L + + +V +V + +++ V Sbjct: 3 MSRYNERQNAMSAIYIHLLREQSMQEVLEDNRFVSEVGTFIQDFNLQDEMLQVVMNVEAR 62 Query: 59 TAYLDGLMKPYL-SRLLEELGQVEKAVLRIALYELS--KRSDVPYKVAINEAIELAKSFG 115 + YL + LG +E+A+L +A EL + V V +NEA+ LAK F Sbjct: 63 KDIYSRAIDHYLTKWRFDRLGFIEQAILLMACAELELGYQDKV---VIVNEAVNLAKDFS 119 Query: 116 AEDSHKFVNGVLDKA 130 E+S+K +NGV+D Sbjct: 120 DEESYKLINGVIDAL 134 >UniRef50_A4BP82 Fmu, rRNA SAM-dependent methyltransferase n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BP82_9GAMM Length = 423 Score = 81.6 bits (201), Expect = 7e-15, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 47/120 (39%), Gaps = 2/120 (1%) Query: 14 VQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL 73 +Q L + + +A D +EL GV + L+ L+ L + Sbjct: 1 MQTLQDVLAHGRTLPNALADSVAALQ-DSRDRALCQELCYGVLRWHSRLEALVLNLLEQR 59 Query: 74 LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPV 133 + +L + LY+L + +P A++ ++ A++ G + +VN VL + Sbjct: 60 PRNRDRDLTLLLELGLYQLMY-TQIPPHAAVSATVDTARALGKSWAAGWVNAVLRRFQRE 118 >UniRef50_A1KRE7 SUN-family protein n=32 Tax=Neisseriaceae RepID=A1KRE7_NEIMF Length = 419 Score = 81.6 bits (201), Expect = 7e-15, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 48/127 (37%), Gaps = 5/127 (3%) Query: 11 ECAVQALYSWQLSQNDIADVEYQFL-AEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 + A ++ + ++ DV Q A D+ + +++ G L ++ Sbjct: 8 KLAADSIAAV-AEGRNLQDVLAQIRTAHPDLTAQENGALQDIAYGCQRYLGSLKHMLAQM 66 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 L + ++ +++L ALY+L + P +NEA+E G F N +L + Sbjct: 67 LKKPIDN--PQLESLLLAALYQLHYTRNAP-HAVVNEAVESIAKIGRGQYRSFANAILRR 123 Query: 130 AAPVIRP 136 Sbjct: 124 FLRERDK 130 >UniRef50_A6G719 Putative uncharacterized protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G719_9DELT Length = 169 Score = 81.6 bits (201), Expect = 8e-15, Method: Composition-based stats. Identities = 36/144 (25%), Positives = 56/144 (38%), Gaps = 22/144 (15%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVD----------------- 44 KP +R R RE A+ + + F E+ +VD Sbjct: 7 KPTSRARGRELALWLMCHLERRGEGSRAALELFWTERPEFEVDDDFLGVAGPQMRDIIED 66 Query: 45 ---VLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPY 100 + R L + A +D + R +E + +V++ VLR+A EL P Sbjct: 67 SSARRWARRLTEAYLEDAAAVDQAIGAASERWRIERMDRVDRNVLRLAAVELR-TQKTPR 125 Query: 101 KVAINEAIELAKSFGAEDSHKFVN 124 V + EA+ LA +G+E S FVN Sbjct: 126 NVVVAEAVRLAARYGSERSAAFVN 149 >UniRef50_C5V0U6 Sun protein n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V0U6_9PROT Length = 421 Score = 81.6 bits (201), Expect = 8e-15, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 39/123 (31%), Gaps = 5/123 (4%) Query: 12 CAVQALYSWQLSQNDIADVEYQFLAEQDV-KDVDVLYFRELLAGVATNTAYLDGLMKPYL 70 A Q + ++ V + L + V ++L G L+ +++ L Sbjct: 7 AATQIVQQVMEDGRNLNQVLDESLRRKSVWTPAQRAALQDLSYGTLRFYGQLNAILELLL 66 Query: 71 SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 + +L +ALY+L S ++ A+ A VN +L Sbjct: 67 HK--HMTDHRISYLLLVALYQLQY-SRAAQHAVVDHAVRSA-DILNPKIRGLVNAILRNF 122 Query: 131 APV 133 Sbjct: 123 LRN 125 >UniRef50_C9LEM4 NusB family protein n=1 Tax=Prevotella tannerae ATCC 51259 RepID=C9LEM4_9BACT Length = 309 Score = 81.2 bits (200), Expect = 1e-14, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 2/108 (1%) Query: 32 YQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALY 90 + L E D +D D + EL + L++ L ++ +++IAL Sbjct: 199 QEILPEYDTED-DHQFALELFQTTIERGDEMRDLIRNNSKNWEFGRLAFMDVIIMQIALT 257 Query: 91 ELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 E+ +P V NE +++AK + S ++NG+LD ++ K Sbjct: 258 EMLTFPTIPLNVTFNEYLDIAKIYSTPRSSSYINGLLDHVVKYLQAEK 305 >UniRef50_B8BTD6 Predicted protein n=1 Tax=Thalassiosira pseudonana RepID=B8BTD6_THAPS Length = 1014 Score = 80.8 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 55/150 (36%), Gaps = 22/150 (14%) Query: 9 ARECAVQAL--YSWQLSQNDIADV------EYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 AR A+ AL + S + Q +++ D + R L+A V Sbjct: 513 ARSIAINALATSAASNSGAHVNAAAFATQQLEQDEHYNEMEARDRAFARLLVATVERRLG 572 Query: 61 YLDGLMKPYLSRLLEEL---GQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA- 116 +DG++ + + + + +A LR + +L D P A E +++ + Sbjct: 573 QIDGVLGSCIEKYPPKKGKHSHLIQATLRTGVAQLLFL-DTPPFAANKETVQVLRMHHHL 631 Query: 117 ---------EDSHKFVNGVLDKAAPVIRPN 137 E KFVNGV K + + + Sbjct: 632 SKTSTYPVPEPMVKFVNGVFRKLSEPLAAD 661 >UniRef50_D0WMZ9 B-like utilization substance protein n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WMZ9_9ACTO Length = 171 Score = 80.0 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 54/140 (38%), Gaps = 7/140 (5%) Query: 4 AARRRARECAVQALYSWQLSQ----NDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNT 59 AR + R A+ ++ D+ + + + + ++ A N Sbjct: 15 TARTKQRNRALDVVFEADERGLLGQGDLLALLGERRVVSTSQSPIRDFGASIVEAYAENA 74 Query: 60 AYLDGLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 +D +++ + + V++++LR A EL I E LA+ + E Sbjct: 75 DDIDTIVEAASEDWAMSRMNAVDRSILRAAAAELVYV-GTDRFHVIPEWASLAREYSTER 133 Query: 119 SHKFVNGVLDKAAPVIRPNK 138 S FV GVL++ A IR + Sbjct: 134 SVGFVMGVLNRVA-DIRARE 152 >UniRef50_D2UG22 Putative trna and rrna cytosine-c5-methylase protein n=1 Tax=Xanthomonas albilineans RepID=D2UG22_XANAL Length = 437 Score = 79.6 bits (196), Expect = 2e-14, Method: Composition-based stats. Identities = 15/115 (13%), Positives = 34/115 (29%), Gaps = 2/115 (1%) Query: 23 SQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEK 82 + L D + V + ++ +L + L + + Sbjct: 27 RGRSLKAELAAALPGLP-DARDRALVEAICFAVLRRRPAYEAALRLWLQKQLPQRDAELR 85 Query: 83 AVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPN 137 A+L +L + A++ +E ++ VN +L +A P Sbjct: 86 ALLLAGFAQLDVL-GLAPHAALSATVEATRALERPRQAGLVNALLRRALRDGLPE 139 >UniRef50_B6WUQ6 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WUQ6_9DELT Length = 505 Score = 79.6 bits (196), Expect = 3e-14, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 39/115 (33%), Gaps = 7/115 (6%) Query: 24 QNDIADVEYQFLAE------QDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEEL 77 I Q L + + + D EL G L ++ L + L+ Sbjct: 56 GCTIQAALQQVLEDTARRQEGGLAERDRHLAAELAYGTLRMENRLAFVLGKVLRQPLKLP 115 Query: 78 GQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAP 132 + + + +A Y L +P ++ A++LA+ K VNG L Sbjct: 116 LPLRRLL-AVAAYGLLFLDRLPAHAVLHTAVDLARQLYGPGLAKVVNGSLRSVQR 169 >UniRef50_D0KVS1 Sun protein n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KVS1_HALNC Length = 437 Score = 79.3 bits (195), Expect = 4e-14, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 41/124 (33%), Gaps = 3/124 (2%) Query: 14 VQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL 73 Q L S + + L++ V + + V + L L R Sbjct: 11 AQLLLSVVGQGVSLDAALGRVLSQAQ--PVHRGLVQAMGYEVLRHYEALVFWRDSLLERP 68 Query: 74 LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPV 133 + + +L + L + + ++N A++ A+ G + +N VL +A Sbjct: 69 IPAKSAIIALLLLVGLERIRGARREASR-SVNSAVQAARELGHPWATGLLNAVLRRAVRQ 127 Query: 134 IRPN 137 I Sbjct: 128 IEEG 131 >UniRef50_C6XFI6 Fmu (Sun) domain protein n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XFI6_LIBAP Length = 445 Score = 79.3 bits (195), Expect = 4e-14, Method: Composition-based stats. Identities = 22/138 (15%), Positives = 47/138 (34%), Gaps = 7/138 (5%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQD---VKDVDVLYFRELLAGVAT 57 MK AR + L + + + + + D + R ++ Sbjct: 1 MKSGM--NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 Query: 58 NTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG-A 116 +D ++ L L + +LR+++ ++ DV ++ A+E AK Sbjct: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 Query: 117 EDSHKFVNGVLDKAAPVI 134 K VN +L + + Sbjct: 118 RHFAKLVNSILRRVSREK 135 >UniRef50_C5A6U4 SAM-dependent tRNA/rRNA cytosine-C5 methylase n=6 Tax=Thermococcus RepID=C5A6U4_THEGJ Length = 451 Score = 79.3 bits (195), Expect = 4e-14, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 44/125 (35%), Gaps = 4/125 (3%) Query: 11 ECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVD--VLYFRELLAGVATNTAYLDGLMKP 68 E AL + + + + KD + + + A +D ++ Sbjct: 11 EVVADALSLVEERELSSKHALERVFRKVAGKDREKARGLAHAYVFEIEKWRAKIDFIINS 70 Query: 69 YLSR-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 L +E+L +LRI +E+ R VP +A + I + K KFVN ++ Sbjct: 71 VLKGSKVEDLDPYLANLLRIGTFEIHFR-KVPPAIATDSIIRVVKERFDFSRAKFVNALM 129 Query: 128 DKAAP 132 Sbjct: 130 HSIEK 134 >UniRef50_A6FYF2 Ribosomal RNA small subunit methyltransferase B n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6FYF2_9DELT Length = 453 Score = 78.9 bits (194), Expect = 5e-14, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 2/89 (2%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAE-QDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 R AV+ L + Q + + L D+ D L+ GV + LD + Sbjct: 14 RRLAVRTLREIEQRQGFSNRILSEQLERFPDLDPRDRGLITTLVYGVLRHRGRLDAHLDA 73 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSD 97 + +L + +LR+A YE+ + Sbjct: 74 AADKP-HKLKGELRTILRVAAYEVLELDR 101 >UniRef50_Q7V3R0 Antitermination protein NusB n=7 Tax=Prochlorococcus marinus RepID=Q7V3R0_PROMP Length = 209 Score = 78.9 bits (194), Expect = 5e-14, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 2/79 (2%) Query: 55 VATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKS 113 + N +D + + R L+ L +V++ +LR+A ++ D P VA +EA+ LA Sbjct: 128 IINNLKSIDSEIDEVMDRWRLKRLPRVDRDILRLAYVDIHFL-DTPVAVACDEAVNLANK 186 Query: 114 FGAEDSHKFVNGVLDKAAP 132 + K +NGVL + Sbjct: 187 YCDTQGRKMINGVLRRLQR 205 >UniRef50_C7RGU2 Fmu (Sun) domain protein n=4 Tax=Anaerococcus RepID=C7RGU2_ANAPD Length = 430 Score = 78.9 bits (194), Expect = 5e-14, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 46/129 (35%), Gaps = 6/129 (4%) Query: 11 ECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL 70 E + +L + ++ Y +++ GV N Y+D ++ Sbjct: 5 ELILNSLVRIICEDKKSNEEINYLEKRVG----NLPYATKVIYGVLENKIYIDYMIGKLS 60 Query: 71 SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 L+++ + +L I +Y + + +++ +EL K S FVN +L Sbjct: 61 KIKLKKIHKNVLTILEIGIYNIHFL-ETKDYATVDKLVELTKR-KNRRSSGFVNAILRNF 118 Query: 131 APVIRPNKK 139 + K Sbjct: 119 IRDEKEIAK 127 >UniRef50_Q16CE2 RRNA methyltransferase RsmB n=15 Tax=Rhodobacterales RepID=Q16CE2_ROSDO Length = 423 Score = 78.1 bits (192), Expect = 7e-14, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 38/129 (29%), Gaps = 7/129 (5%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR AV L ++++ ++ D L D +++ Sbjct: 8 ARRSAVYLLDQILGEGRLMSELL-TAGTLDKLEPEDRARAARLAQDTLRGLERADRILQK 66 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA-EDSHKFVNGVL 127 +LS+ + LR+ EL + +N +EL N VL Sbjct: 67 HLSKYP---PLTVRNALRVGAVEL--CTGTAAHGVVNAMVELVSRHKHYSHLKGLTNAVL 121 Query: 128 DKAAPVIRP 136 K A Sbjct: 122 RKVAADGPA 130 >UniRef50_C1TRU2 tRNA/rRNA cytosine-C5-methylase n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TRU2_9BACT Length = 479 Score = 77.7 bits (191), Expect = 1e-13, Method: Composition-based stats. Identities = 16/122 (13%), Positives = 36/122 (29%), Gaps = 4/122 (3%) Query: 11 ECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL 70 E A++ ++ V + D L+ + + ++ +L Sbjct: 45 EAALEVWREV-RRGRFASESLRAI--SDRVSEKDRPLAATLVYSLIRRESLWKEIVGRFL 101 Query: 71 SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 + + L + + +V +N +E K E + VN VL + Sbjct: 102 KTGSSGVSPAVRDALMVGAAGSLELRTFEPRVLVNALVEWTKCR-DERGSRVVNAVLRRI 160 Query: 131 AP 132 Sbjct: 161 VE 162 >UniRef50_C9M5B8 Putative Sun protein n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M5B8_9BACT Length = 438 Score = 77.3 bits (190), Expect = 1e-13, Method: Composition-based stats. Identities = 18/126 (14%), Positives = 35/126 (27%), Gaps = 6/126 (4%) Query: 11 ECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL 70 E A++ L + + Q L + + D L+ L YL Sbjct: 5 EAALKVLSAVEKGGFAS-----QKLRDLPLDAPDRTLAASLVYACLRRAELWRFLAFEYL 59 Query: 71 SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 E + L++ + + +N ++ K K VN V+ + Sbjct: 60 RPKPEGFSPSVRLALQLGAAGALELKNFAVPALVNGLVDWTKR-SDRGGAKVVNAVMRRL 118 Query: 131 APVIRP 136 Sbjct: 119 LDQGPA 124 >UniRef50_B9YCQ6 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YCQ6_9FIRM Length = 115 Score = 77.3 bits (190), Expect = 1e-13, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 56/115 (48%), Gaps = 4/115 (3%) Query: 17 LYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLS-RLLE 75 LY +L + ++ + + + + D + R L+ N + L E Sbjct: 4 LYQHRLLNKPMDEIIEEVMEMKTGELDD--FSRILILDTLDNENRYIQYINETLKDWSFE 61 Query: 76 ELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 LG +E+A+L +A EL ++ + I+EA+ LAK + +++++ +NGVLD+ Sbjct: 62 RLGVLEQAILLMACSELDHQT-ASAAIIIDEAVRLAKDYCDDEAYRLINGVLDRI 115 >UniRef50_A4E6P2 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E6P2_9ACTN Length = 118 Score = 76.9 bits (189), Expect = 2e-13, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 2/62 (3%) Query: 76 ELGQVEKAVLRIALYELSKRSD--VPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPV 133 + ++ +LRIA+YE+ +D V + INEA+ELAK++G + S FVNGVL K A Sbjct: 2 RMPGADRNLLRIAVYEMRFLTDEEVSDAIVINEAVELAKAYGTDQSASFVNGVLGKIARS 61 Query: 134 IR 135 Sbjct: 62 EE 63 >UniRef50_Q7V9D9 Antitermination protein NusB n=18 Tax=cellular organisms RepID=Q7V9D9_PROMM Length = 222 Score = 76.9 bits (189), Expect = 2e-13, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 58/128 (45%), Gaps = 7/128 (5%) Query: 7 RRARECAVQALY---SWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 + RE +QA ++ + + LA + ++ L E + V +D Sbjct: 89 SQVREH-LQACLIGAEQVINGVSTSLEISRLLALGN-QEQIRLGALERVRLVIEQRNSID 146 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + + L L ++++ +LR+A+ +L+ P+ VA NEA+ELA + + + Sbjct: 147 ASIDAVMEGWRLSRLPRIDRDILRLAVVDLTALQ-TPFAVACNEAVELAHRYSDDQGRRM 205 Query: 123 VNGVLDKA 130 +NGVL + Sbjct: 206 INGVLRRL 213 >UniRef50_Q40J48 N utilization substance protein B, putative n=4 Tax=canis group RepID=Q40J48_EHRCH Length = 174 Score = 76.6 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 23/136 (16%), Positives = 55/136 (40%), Gaps = 9/136 (6%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADV------EYQFLAEQDVKDVDVLYFRELLAGVA 56 + + R A+Q YS + I D+ Y+ D+ +D +++ + Sbjct: 12 HSKKTTTRFLAIQGTYSMIFNNYTINDIDNLIDYLYEMKEVLDLIQIDNQLLLKIMNTML 71 Query: 57 TNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 ++ + +L ++ + + ++++ A+ EL SD + INE + +A Sbjct: 72 LTFNTINSTIATFLNEKWSIDRINLISLSIIKTAVCELI-CSDTDAVIIINEYVNIASHI 130 Query: 115 GAEDSHKFVNGVLDKA 130 F+N +L++ Sbjct: 131 LERTDVNFINAILNQV 146 >UniRef50_B6BVG1 Sun protein n=1 Tax=beta proteobacterium KB13 RepID=B6BVG1_9PROT Length = 412 Score = 76.6 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 54/124 (43%), Gaps = 9/124 (7%) Query: 13 AVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSR 72 A + L +S I + +FL E++ + + ++++ G + D ++K ++ + Sbjct: 8 AAKILSE-LISGRKIDTLFNRFLKEEN----NKNFIKDIVYGGIRDFYLNDYILKKFVKK 62 Query: 73 LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAP 132 + + K +L +Y+++ +S +NEA++ AK + + VN VL Sbjct: 63 DIN--DHLIKYLLMNTIYQINHQSK-AEFTVVNEAVKAAKKI-NNNFYNLVNAVLRNYLR 118 Query: 133 VIRP 136 Sbjct: 119 EKDK 122 >UniRef50_D1N3Y9 Fmu (Sun) domain protein n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N3Y9_9BACT Length = 409 Score = 75.8 bits (186), Expect = 4e-13, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 7/126 (5%) Query: 11 ECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL 70 E AV L + + + ++ D L ++ LL +L+G + Sbjct: 13 EEAVAGLAAVEAGEANLDDFLDFRLQYPEL----RRSISNLLFLCFRRKRFLEGWIGRLA 68 Query: 71 SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 +R + +L L +++ ++ + + A+N A+ L K G KFVN VL +A Sbjct: 69 ARPPR---PAVRRLLTAVLAQITFQTGIAPESAVNIAVGLVKHSGKLQEAKFVNAVLRRA 125 Query: 131 APVIRP 136 +P Sbjct: 126 LEQPQP 131 >UniRef50_C5SHX2 Sun protein n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SHX2_9CAUL Length = 464 Score = 75.0 bits (184), Expect = 7e-13, Method: Composition-based stats. Identities = 16/129 (12%), Positives = 46/129 (35%), Gaps = 8/129 (6%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR A+ + + ++ + + + + + L V LD ++ Sbjct: 45 ARVAAITLVEAALEKRSGFDEAAASA-DFLKLSETERAFAGALALLVLRRLGQLDHVI-- 101 Query: 69 YLSRLLEELGQ-VEKAVLRIALYELSKRSDVPYKVAINEAIELA-KSFGAEDSHKFVNGV 126 + +++ + +LRI + ++ VP A++ +++A + +N + Sbjct: 102 --HKKTQKMPPEAVRQLLRIGMAQIFFMQ-VPDFAAVSTTVKIAERENKTRPFKGLINAI 158 Query: 127 LDKAAPVIR 135 L + Sbjct: 159 LRGLIRDGK 167 >UniRef50_D1Y2M1 Fmu n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y2M1_9BACT Length = 439 Score = 75.0 bits (184), Expect = 7e-13, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 39/127 (30%), Gaps = 4/127 (3%) Query: 11 ECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL 70 E A+ +++ V D L + + + L + +L Sbjct: 13 EAAMYLWRQVDKGGI-VSESLRTL--GDRVSPPDRTLAASLAYALVRRLSLWEHLREKFL 69 Query: 71 SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 E+ Q +A + + L++ V I+ IE K+ + VN VL + Sbjct: 70 LPRPEKFSQSVRAAVLMGAAGLTELEKFAPAVLISSLIEWTKTR-DPRGARVVNAVLRRV 128 Query: 131 APVIRPN 137 Sbjct: 129 LEEGPAE 135 >UniRef50_UPI0000E87C3C sun; rRNA methylase n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87C3C Length = 423 Score = 74.2 bits (182), Expect = 1e-12, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 50/136 (36%), Gaps = 11/136 (8%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 M + R A + L N++ V + L D V + + G Sbjct: 1 MHESQRYAA------IIIDGVLDGNNLDHVFEKILKNPD-DSVQQSQVKAITYGTLRYMG 53 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 + L+ + +E +V ++++ +A+Y+L++ + +++A+ AK S Sbjct: 54 QSNYLIGKLIKNKIEN--RVLESLIHVAIYQLTQEAHT-DFTVVDQAVRAAKKIDFRKS- 109 Query: 121 KFVNGVLDKAAPVIRP 136 VN VL Sbjct: 110 NLVNAVLRTFLRNKEK 125 >UniRef50_A5V7N4 Fmu (Sun) domain protein n=7 Tax=Sphingomonadales RepID=A5V7N4_SPHWW Length = 422 Score = 74.2 bits (182), Expect = 1e-12, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 42/128 (32%), Gaps = 7/128 (5%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR A++ L + + A+ D D D + + A V TA LD L+ Sbjct: 10 ARRAALRLLDAVLRRGLPLEAAMDGACADLDRAD-DRGFAHAIAAEVLRRTADLDALIDG 68 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 R L + VLRIAL + P AI + L K V+ V Sbjct: 69 ATERPLPA-DAKARMVLRIALAQALAL-GTPGHAAITTVLPLV----DGGPRKLVHAVFG 122 Query: 129 KAAPVIRP 136 Sbjct: 123 AVMRDGAA 130 >UniRef50_Q46I53 Antitermination protein NusB n=2 Tax=Prochlorococcus marinus RepID=Q46I53_PROMT Length = 208 Score = 73.5 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 2/92 (2%) Query: 41 KDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVP 99 + + V +D + + L+ L +++ +LR+A +L + P Sbjct: 109 QKEIRELALRRVDLVIEKQDEIDHKLDSVMEGWRLKRLPRIDSDILRLAWVDLIDF-NTP 167 Query: 100 YKVAINEAIELAKSFGAEDSHKFVNGVLDKAA 131 V NEA+ LA + E + +NGVL K Sbjct: 168 MAVTCNEAVNLANRYSDEQGRRMINGVLRKLQ 199 >UniRef50_B6YR78 Transcription termination factor NusB n=1 Tax=Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 RepID=B6YR78_AZOPC Length = 305 Score = 73.1 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 60/127 (47%), Gaps = 4/127 (3%) Query: 12 CAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLS 71 ++ L +Q +++ V + ++ + R + N+ +D MK + Sbjct: 182 LVLKTLKQFQ-NRSIAEPVLLPLFKDNTTQEYAIQLLRSSIIEAEENSDLIDTQMK---N 237 Query: 72 RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAA 131 + + ++ ++++AL EL+ +P KV +NE I+LA+ + S F+NG+L Sbjct: 238 WDKKRIALLDLIIMQMALAELNNFPAIPLKVTLNEYIDLARYYSTPKSTSFINGILQAIV 297 Query: 132 PVIRPNK 138 +++ NK Sbjct: 298 SILKINK 304 >UniRef50_Q601I2 Putative uncharacterized protein n=5 Tax=Mycoplasma hyopneumoniae RepID=Q601I2_MYCH2 Length = 253 Score = 72.7 bits (178), Expect = 3e-12, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 12/132 (9%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 RR R + +Y WQL +I + + +D +LL + N ++L Sbjct: 119 TKRRLGRMGVISIIYIWQLFDKNID--IKEIKTKYFELTIDQ---LKLLNFIKKNYSFLR 173 Query: 64 GLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG--AEDS 119 ++ L E + + +++L + EL VP ++ NEA+E+ K F ++ Sbjct: 174 KVINLQLKSNWNWERILPLIRSILLVGAAELFF---VPSRIVFNEAVEITKIFSIAGDNE 230 Query: 120 HKFVNGVLDKAA 131 FVN VL K Sbjct: 231 FCFVNAVLQKIY 242 >UniRef50_B1ZZX2 Fmu (Sun) domain protein n=2 Tax=Opitutaceae RepID=B1ZZX2_OPITP Length = 488 Score = 72.3 bits (177), Expect = 5e-12, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 49/153 (32%), Gaps = 31/153 (20%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 AR A A + L W + + ++ + + + L+ G + +D Sbjct: 7 ARTTAWPAAARLLARWLDRRERVDELLESL--GGSLTGTERARCQHLVFGAIRHFGRIDA 64 Query: 65 LMKPYLSRLLEELGQVEKAVLRIALYELS-------------------KRSDVPYKVA-- 103 + +S +AVL +A +EL D P V Sbjct: 65 AIGRLVSHSPRF---ATRAVLLVAGFELIEARAERGGAPTRASEAGTTNAPDQPTPVVDG 121 Query: 104 -----INEAIELAKSFGAEDSHKFVNGVLDKAA 131 ++ A+E K + + VN V+ K A Sbjct: 122 RVAKIVHHAVEQTKQLASPAEARMVNAVVRKLA 154 >UniRef50_B6W6K6 Putative uncharacterized protein n=1 Tax=Anaerococcus hydrogenalis DSM 7454 RepID=B6W6K6_9FIRM Length = 426 Score = 71.6 bits (175), Expect = 7e-12, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 44/129 (34%), Gaps = 6/129 (4%) Query: 11 ECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL 70 + + LY D+ E D+ Y + + GV N YL+ ++ Sbjct: 5 KLILDGLYRICYKNEKSTDIINDIAREVS----DISYITKNIYGVLENKLYLEYIIGKLS 60 Query: 71 SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 +++L + +L I +Y + +NE + L K S FVN VL Sbjct: 61 KIKIKKLDKKVLLILEIGIYNIHFLDRK-NYAIVNELVNLTKKVSY-KSKSFVNAVLRSY 118 Query: 131 APVIRPNKK 139 K Sbjct: 119 IRDEENLSK 127 >UniRef50_Q8TGZ4 tRNA/rRNA cytosine-C5-methylase n=1 Tax=Methanopyrus kandleri RepID=Q8TGZ4_METKA Length = 452 Score = 71.2 bits (174), Expect = 9e-12, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 50/136 (36%), Gaps = 10/136 (7%) Query: 1 MKPAARRR--ARECAVQALYSWQLSQNDIADVEYQFLAEQDV-KDVDVLYFRELLAGVAT 57 M +R+ AR W+ ++ + + + L + V + Sbjct: 1 MSSLSRQELTARVFV-----EWEETRRSLRECVKKVLLNEGVRDHRVWGTIHAYCFELMK 55 Query: 58 NTAYLDGLMKPYLSR-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 +D ++ + L +L + LR+ +E+ +DV +A NEA+++ Sbjct: 56 RLRTVDAFLEATIRNAKLFDLDPWVRNALRVGTFEMKF-NDVKPAIATNEAVKIVVECVG 114 Query: 117 EDSHKFVNGVLDKAAP 132 E +FVN VL Sbjct: 115 EGPARFVNAVLYDVER 130 >UniRef50_C7I4U3 Sun protein n=1 Tax=Thiomonas intermedia K12 RepID=C7I4U3_THIIN Length = 457 Score = 70.8 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 46/144 (31%), Gaps = 13/144 (9%) Query: 3 PAARRRARE---CAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNT 59 P+A+R R Q + + Q + ++ Q + L V + Sbjct: 12 PSAQRPLRRDLIACAQLIGAVQ-AGASLSTALPQAATRGKWDASQRGAAQALSFAVLRHL 70 Query: 60 AYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYK----VAINEAIELAKSF- 114 + L+ + + + + VL+ AL D P +N+A+E K Sbjct: 71 GTVRALLTDLQPKPIH--PPLLRDVLQTALA--LLLPDAPAHYAAHTVVNQAVEACKRTP 126 Query: 115 GAEDSHKFVNGVLDKAAPVIRPNK 138 + F N +L + + Sbjct: 127 SLRHAQGFANALLRRFVSRTADIE 150 >UniRef50_Q4FLU0 Antitermination protein NusB n=3 Tax=Candidatus Pelagibacter RepID=Q4FLU0_PELUB Length = 134 Score = 70.8 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 54/128 (42%), Gaps = 11/128 (8%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R +Q LY + + + ++++ G + +K Y Sbjct: 12 RVIIIQKLYGNFFNDDTDLTFPKHRF---------KKFIKDVVLGTIERDEVIKEEVKKY 62 Query: 70 LSRLLE--ELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 LS LE L QV + +++ A++E + V K+ I E ++ + F + K++N +L Sbjct: 63 LSEDLELTNLDQVFQVIVKSAIFEFLYKPKVSSKIIIKEYLDASNFFLEDGQTKYLNAIL 122 Query: 128 DKAAPVIR 135 DK A IR Sbjct: 123 DKIAKKIR 130 >UniRef50_Q14MH2 Hypothetical transcription factor involved in antitermination transcription regulator protein n=1 Tax=Spiroplasma citri RepID=Q14MH2_SPICI Length = 126 Score = 70.0 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 54/129 (41%), Gaps = 5/129 (3%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 ++R+ R + LY + QND+ + + + V + + N + + Sbjct: 1 MSKRQERINIINLLYRHFVLQNDVLTTKQEAYDFSQMVTTSVE--TNQVEEILANLSDII 58 Query: 64 GLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 + +L L KAVL +YE+ + + INE++E+ K +G + Sbjct: 59 AKINQHLKPGWDFVRLSNYHKAVLVYGVYEICY-QHLAKAIVINESLEILKLYGEDVDFS 117 Query: 122 FVNGVLDKA 130 ++N VLD+ Sbjct: 118 YINSVLDQV 126 >UniRef50_B5Y8M6 Putative uncharacterized protein n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y8M6_COPPD Length = 148 Score = 70.0 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 2/130 (1%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 RE +Q L ++L D+ + D + + LL N +D + Sbjct: 13 RELLLQELLGYELGLTSQEDLWPRLKVALPKSDRVKRHIKRLLNAYLENREEIDIWIDHS 72 Query: 70 LS-RLLEELGQVEKAVLRIALYELSKR-SDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 L + +EK ++R+A+ E + + ++ +++A+ + E K ++ ++ Sbjct: 73 LKSKSFAAYSDLEKMIMRLAVVETRFFGDEKMMPIIVSTWVDIARRYVDESFAKAIHAIM 132 Query: 128 DKAAPVIRPN 137 + Sbjct: 133 GTCYEEQNAD 142 >UniRef50_Q2YC21 Sun protein n=7 Tax=Betaproteobacteria RepID=Q2YC21_NITMU Length = 442 Score = 70.0 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 47/142 (33%), Gaps = 20/142 (14%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLA-EQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R R A +S + V + + D ++L GV LD L Sbjct: 3 RTQRLAATTV--ERVVSGASLTTVLQETWRSHSGLSDQQRGAIQDLSYGVLRFYGQLDIL 60 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIEL----------AKSFG 115 + L++ L+ Q + +L + LY+L S V ++ A+ +++ Sbjct: 61 LGLLLNKPLK--DQSLRYLLLVGLYQLQY-SKTAPHVVVDSAVSASCSPSIDGRNSRNML 117 Query: 116 AEDSHK----FVNGVLDKAAPV 133 K VN +L Sbjct: 118 DPRHAKSIGGLVNAILRNFLRK 139 >UniRef50_B1AIT8 Transcription antitermination factor NusB n=15 Tax=Ureaplasma RepID=B1AIT8_UREP2 Length = 127 Score = 70.0 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 56/124 (45%), Gaps = 7/124 (5%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R Q +Y W +++ + L + D+ D+ + + + N L ++KP Sbjct: 8 RVKLFQFIYHWLITKKNKPIALKCALVDFDL---DLNWI-NVGEYILDNYEQLTKMIKPL 63 Query: 70 L--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 + E L VE+A+L ++ Y P K+ I++ + ++ +S+KF+N +L Sbjct: 64 ISKDWTFERLSYVEQALL-LSAYGEYLVLKTPKKIIIDQTLITTHNYSNNESYKFINAIL 122 Query: 128 DKAA 131 D+ Sbjct: 123 DQLL 126 >UniRef50_D2RGI9 Fmu (Sun) domain protein n=2 Tax=Archaeoglobaceae RepID=D2RGI9_ARCPR Length = 443 Score = 69.6 bits (170), Expect = 3e-11, Method: Composition-based stats. Identities = 19/134 (14%), Positives = 44/134 (32%), Gaps = 7/134 (5%) Query: 11 ECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL 70 E + L + ++ + + L+ + + + +D +++ Sbjct: 6 ELVAEVLKVIEETKLSEKEAIKRCLSGKISDHAIWSSVHAYVFEIEKRLNLIDFILRNCF 65 Query: 71 SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK- 129 R ++ V K +LR+ +YE+ V +A + + + K N VL + Sbjct: 66 -REFDKQNTVFKNLLRVGVYEMHF-KGVHPALATDSIVRIVKQRFNLKMASLANAVLRRA 123 Query: 130 ----AAPVIRPNKK 139 R K Sbjct: 124 EKFDYERRFRKLGK 137 >UniRef50_D1J7Q8 N utilization substance protein B homolog(Protein nusB) n=1 Tax=Mycoplasma hominis ATCC 23114 RepID=D1J7Q8_MYCHP Length = 157 Score = 69.6 bits (170), Expect = 3e-11, Method: Composition-based stats. Identities = 23/141 (16%), Positives = 53/141 (37%), Gaps = 12/141 (8%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 + +AR + +Y +L +++ + L ++ L + Sbjct: 21 NKYKARMHIINCIYQSELFNKNLS--IQEILENCGENQLNANEIESL-KIIEAKYDVFTR 77 Query: 65 LMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + K ++ + + +A++ YEL +V INE + ++K + + +KF Sbjct: 78 IAKKFISEDWEWNRILPLSRAIIIYGEYELLFND---PRVVINEMVNISKIYSPNNDYKF 134 Query: 123 VNGVLD----KAAPVIRPNKK 139 +N VLD ++K Sbjct: 135 INKVLDLVSKNVIKKNTKDEK 155 >UniRef50_Q2GCQ0 Putative N utilization substance protein B n=2 Tax=Neorickettsia RepID=Q2GCQ0_NEOSM Length = 141 Score = 69.6 bits (170), Expect = 3e-11, Method: Composition-based stats. Identities = 32/138 (23%), Positives = 61/138 (44%), Gaps = 5/138 (3%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVK---DVDVLYFRELLAGVATNT 59 P+ +R AR +++ YS S +++ + L Q++ D+ +L N Sbjct: 2 PSEKRVARLLSIEVCYSSYFSDLPQSELISRALELQEMPYMKRYDLELLNSILDLCLANV 61 Query: 60 AYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 L+ +L + + ++ ++LR+A+ EL S + INE + L F + Sbjct: 62 EADTELIGRFLSEEWEINRIDNLKLSLLRVAISELRLSSVGQRNLVINEYVSLGGLFLSV 121 Query: 118 DSHKFVNGVLDKAAPVIR 135 FVN +L+K A I+ Sbjct: 122 KEVGFVNAILEKLASEIQ 139 >UniRef50_Q8TGY2 tRNA/rRNA cytosine-C5-methylase n=1 Tax=Methanopyrus kandleri RepID=Q8TGY2_METKA Length = 431 Score = 69.2 bits (169), Expect = 4e-11, Method: Composition-based stats. Identities = 17/120 (14%), Positives = 42/120 (35%), Gaps = 5/120 (4%) Query: 20 WQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELG 78 + + + L + + + L + +D ++ L +E+L Sbjct: 1 MEERGHSLKAALRNALR--GIGGRRHRFVQALAHELVRVLGNVDLVLNRVLRGSTVEDLH 58 Query: 79 QVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 + LR+ +E+ R + P V +++ K +F N +L + + P + Sbjct: 59 PYLRNALRVGTWEIHWRREHPGPVT-KAVVDVVKERVGPKHARFANAILRQVER-VNPEE 116 >UniRef50_A5IYQ6 Transcription termination factor (NusB) n=2 Tax=Mycoplasma RepID=A5IYQ6_MYCAP Length = 139 Score = 68.9 bits (168), Expect = 5e-11, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 65/142 (45%), Gaps = 14/142 (9%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK +RR R + LY ++L + D D+D F++L ++ N Sbjct: 1 MK--SRREYRLGVINVLYKYEL----LEAKLLPSQIFSDESDIDNEQFKQL-ELISLNYD 53 Query: 61 YLDGLMKPYLSR--LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 Y + +L++ +L + +A+L A +EL + K+ INEA+E+ KSF ++ Sbjct: 54 YYQKTILKFLNQNTAWTKLPALIRAILLNATHELL---SISPKIVINEAVEITKSFYEQE 110 Query: 119 S--HKFVNGVLDKAAPVIRPNK 138 + +K VN +L N+ Sbjct: 111 ANFYKLVNALLQNIYKYFVINE 132 >UniRef50_A9RW70 Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RW70_PHYPA Length = 207 Score = 68.9 bits (168), Expect = 5e-11, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 49/127 (38%), Gaps = 8/127 (6%) Query: 11 ECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGV----ATNTAYLDGLM 66 E AL ++ + + R L+ A L ++ Sbjct: 84 EATAMALEEALDAEASLEASVLTAPPPLVYNSFALRLARTLVKETAYRWLQQEAILMEII 143 Query: 67 KPYLSRLLEELGQVEK-AVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 L ++ + + VL++AL E+ +DVP +V +NEA+ELAK F + + +NG Sbjct: 144 P--LKWKVQPKAALLQICVLQMALAEIE-ATDVPPRVVVNEAVELAKRFCDLAAPRIING 200 Query: 126 VLDKAAP 132 L Sbjct: 201 CLGSYIR 207 >UniRef50_Q9V089 Sun/NOL1/NOP nucleolar protein n=3 Tax=Pyrococcus RepID=Q9V089_PYRAB Length = 450 Score = 68.9 bits (168), Expect = 6e-11, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 42/125 (33%), Gaps = 4/125 (3%) Query: 11 ECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVD--VLYFRELLAGVATNTAYLDGLMKP 68 E AL + + + + KD + + + A +D ++ Sbjct: 11 EIIADALTLVEEKELSSKHALERIFKRVEGKDKETARGIAHAYVFEIEKWRAKIDFILNS 70 Query: 69 YLSR-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 L +E+L +LRI +E+ V +A + + + K KF N +L Sbjct: 71 VLRGSKVEDLDLYLANLLRIGTFEMKF-KGVNPAIATDSVVRVVKEKFDLTKAKFANAIL 129 Query: 128 DKAAP 132 + Sbjct: 130 REVEK 134 >UniRef50_Q7Y092 Os03g0656900 protein n=9 Tax=Poaceae RepID=Q7Y092_ORYSJ Length = 287 Score = 68.5 bits (167), Expect = 6e-11, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 4/91 (4%) Query: 46 LYFRELLAGVATNTAYLDGLMKPYL--SRLLEELGQV-EKAVLRIALYELSKRSDVPYKV 102 RE+L VA+ ++ + E + ++ E +L IA+ E++ P+K+ Sbjct: 182 RLAREILVAVASGWDKHVDIINKITPQNWKDEPVARILELCILHIAMAEMT-SKGTPHKI 240 Query: 103 AINEAIELAKSFGAEDSHKFVNGVLDKAAPV 133 INEA++LAK F + + +NG L Sbjct: 241 VINEAVDLAKRFCDGGAPRVINGCLRTFVKD 271 >UniRef50_C5J681 Putative uncharacterized protein MCJ_002820 n=1 Tax=Mycoplasma conjunctivae HRC/581 RepID=C5J681_MYCCR Length = 133 Score = 66.5 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 55/131 (41%), Gaps = 12/131 (9%) Query: 12 CAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLS 71 + LY +L + I V F ++ + F+ + N + L L+ +L+ Sbjct: 2 AVISLLYQSELLEEQIN-VGQIFQDHPELDSEQIKMFKFIA----KNYSLLQKLIAAHLN 56 Query: 72 --RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG--AEDSHKFVNGVL 127 E + + +A+L + EL ++ INE IE++K F + + F+N V+ Sbjct: 57 SQWQWERILPLNRAILLYGISELFFSEH---RIVINEMIEISKEFTADGDKDYGFINAVI 113 Query: 128 DKAAPVIRPNK 138 + ++ K Sbjct: 114 ENVYQYLKRKK 124 >UniRef50_Q4A684 Putative uncharacterized protein n=1 Tax=Mycoplasma synoviae 53 RepID=Q4A684_MYCS5 Length = 156 Score = 66.5 bits (162), Expect = 3e-10, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 54/153 (35%), Gaps = 24/153 (15%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 KP +R+ R +Q LY +L + + +D +E + V N Y Sbjct: 5 KPKTQRQKRIEKIQILYQVEL----LNLQKDFDFVLNMEPYLDAKQTKE-VFVVLKNYDY 59 Query: 62 LDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG---- 115 ++ L + L + +A+L A E + ++ INEA+E+ K F Sbjct: 60 FKNFLESLLDPSWNWQRLSYMLRAILLNACAEFEF---IDARIVINEAVEITKIFFQLTS 116 Query: 116 ----------AEDSHKFVNGVLDKAAPVIRPNK 138 + KF N +L+ + Sbjct: 117 DTSAKEYNSIDYNLFKFTNALLETYYKTKVKIE 149 >UniRef50_A1B5L0 Fmu (Sun) domain protein n=30 Tax=Alphaproteobacteria RepID=A1B5L0_PARDP Length = 535 Score = 65.8 bits (160), Expect = 5e-10, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 47/129 (36%), Gaps = 10/129 (7%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 AR AR A++ L + + + + V +D Sbjct: 121 ARDGARSGALRLLAAVD-DGATLDEAGALTDRLAPAERARARRLA---LEVLRRADRVDL 176 Query: 65 LMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKS--FGAEDSHKF 122 L+ P L+R +LR+A E+ + P A+N A+ LA++ + + Sbjct: 177 LLAPMLARRPR---PEIMRILRLAAVEMLALGEAP-HGAVNAAVALARASGRKGQAAAGM 232 Query: 123 VNGVLDKAA 131 VN VL K A Sbjct: 233 VNAVLRKIA 241 >UniRef50_UPI00003837A7 COG0144: tRNA and rRNA cytosine-C5-methylases n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI00003837A7 Length = 188 Score = 65.0 bits (158), Expect = 6e-10, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 47/139 (33%), Gaps = 7/139 (5%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 AAR ARE L + + D Q + D R + ++ Sbjct: 21 AARHVAREAVATLLGAA--RGLALEDALAQAGRGVGLAPADAALARAIATASFRRLGFIR 78 Query: 64 GLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF-GAEDSHKF 122 + L L + A+L ++ + V A++ ++ LAK+ + Sbjct: 79 AALAARLRDGLPDDRPHLLALLVTGAAQILDLA-VADHAAVDLSVRLAKADPQLQHLAPL 137 Query: 123 VNGVLDKAAPV---IRPNK 138 VN VL + A IR + Sbjct: 138 VNAVLRRIARERDAIRAEE 156 >UniRef50_A9NFG4 Transcription antitermination factor n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NFG4_ACHLI Length = 126 Score = 65.0 bits (158), Expect = 7e-10, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 5/91 (5%) Query: 49 RELLAGVATNTAYLDGLMKPYLSR-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEA 107 +E++ G+ ++D L+ + ++ L V+ A++R+A+Y L K D P ++ INEA Sbjct: 37 KEVINGMIDELEHVDFLISSTIKNYTIDRLNLVDLAIIRVAVYALLKEID-PAEIVINEA 95 Query: 108 IELAKSFG---AEDSHKFVNGVLDKAAPVIR 135 IEL+K + E HKF N ++D I+ Sbjct: 96 IELSKEYTDLDDEKQHKFNNSLIDNIYKKIK 126 >UniRef50_D0GJC1 Putative ribosomal RNA small subunit methyltransferase B n=1 Tax=Leptotrichia goodfellowii F0264 RepID=D0GJC1_9FUSO Length = 442 Score = 63.8 bits (155), Expect = 1e-09, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 46/123 (37%), Gaps = 6/123 (4%) Query: 14 VQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL 73 V L +S + ++ + L+ ++ N Y+D L++ + + Sbjct: 19 VNLLDEI-MSGKYSNIQLNHYFKTKNYLKKEKLFITNIINITIKNLIYIDYLLEKTVKNI 77 Query: 74 LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPV 133 + K +LRI++ +L ++ + EA+E+AK S FVN L Sbjct: 78 QKRK---IKQLLRISVAQL-FFTEADNAGVLYEAVEVAKIINNHQS-GFVNATLQSVLRN 132 Query: 134 IRP 136 Sbjct: 133 KDE 135 >UniRef50_B3PM53 Transcription termination factor n=1 Tax=Mycoplasma arthritidis 158L3-1 RepID=B3PM53_MYCA5 Length = 148 Score = 63.8 bits (155), Expect = 2e-09, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 51/132 (38%), Gaps = 14/132 (10%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 + R + +Y +L + I D+ ++ + + L Sbjct: 19 KKYNERVKLITFIYQSELFEEKID--VNYLFEHFDLSKRELDSLT-----IISEKYDLFQ 71 Query: 65 LMKPYL---SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS-H 120 + + + + +A++ ++EL S KV INE + +AKSF +DS + Sbjct: 72 SIAKRSILEQWTWQRIQPLARAIIIYGIFELFFNS---PKVVINEMVNIAKSFIPDDSTY 128 Query: 121 KFVNGVLDKAAP 132 KFVN LD A Sbjct: 129 KFVNRTLDMIAK 140 >UniRef50_B9GXX5 Predicted protein n=2 Tax=Spermatophyta RepID=B9GXX5_POPTR Length = 218 Score = 63.1 bits (153), Expect = 3e-09, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 7/122 (5%) Query: 19 SWQLSQNDIADVEYQFLAEQD---VKDVDVLYFRELLAGVATNTAYLDGLMKPYLS-RLL 74 QLS + +E + L+ + + + R+LL V ++ Sbjct: 81 ELQLSDEKESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDSHVLVIDKVSPPNWK 140 Query: 75 EELGQVEK--AVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAP 132 E +L +A+ E++ +++ INEA++LAK F + +NG L Sbjct: 141 NEPAGRILEFCILHMAMSEITVL-GTRHQIVINEAVDLAKRFCDGAGPRIINGCLRTFLK 199 Query: 133 VI 134 + Sbjct: 200 DL 201 >UniRef50_Q8EWP3 Transcription termination factor N-utilization substance protein B n=1 Tax=Mycoplasma penetrans RepID=Q8EWP3_MYCPE Length = 149 Score = 62.7 bits (152), Expect = 4e-09, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 61/127 (48%), Gaps = 7/127 (5%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAE-QDVKDVDVLYFRELLAGVATNTAYLDGLM 66 + R + +YS + D +F E ++KD D+ +++A N + + Sbjct: 25 KKRVACFRFIYSTLIMNLGDKDCILKFNEELAELKDKDIA---KVIAFYIKNKQNIKSRI 81 Query: 67 KPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 KP L ++ L +V+ +++ A E D+ K+ I++AI +K + +S+KF+N Sbjct: 82 KPLLKEEWEIDRLNKVDLSIIMEAFCEF-HTLDIDRKIIIDQAIVTSKRYSENNSYKFIN 140 Query: 125 GVLDKAA 131 +LDK Sbjct: 141 FILDKLL 147 >UniRef50_D1H5W4 Whole genome shotgun sequence of line PN40024, scaffold_4.assembly12x (Fragment) n=7 Tax=Magnoliophyta RepID=D1H5W4_VITVI Length = 218 Score = 62.7 bits (152), Expect = 4e-09, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 50/124 (40%), Gaps = 9/124 (7%) Query: 19 SWQLSQNDIADVEYQFLAEQD---VKDVDVLYFRELLAGVAT----NTAYLDGLMKPYLS 71 + + +E + L+ + + + R+LL V + +D + P Sbjct: 81 ELLRNNEKESAIEAEVLSAPPKLVYGKLILRFTRKLLVAVVDKWNSHVLVIDKVAPPNWK 140 Query: 72 RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAA 131 +E +L +A+ E++ +++ INEA++LAK F + + +NG L Sbjct: 141 NEPAGR-ILELCILHLAMSEIAVL-GTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV 198 Query: 132 PVIR 135 + Sbjct: 199 KDLE 202 >UniRef50_B4RCX9 rRNA methyltransferase RsmB n=8 Tax=Alphaproteobacteria RepID=B4RCX9_PHEZH Length = 598 Score = 62.3 bits (151), Expect = 4e-09, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 7/78 (8%) Query: 58 NTAYLDGLMKPYLSRLL-EELGQVEKAVLRIALYELSKRSDVPYKVAINEAIEL-AKSFG 115 + +D ++ L + + + QV LR+ +L P A++ ++L A G Sbjct: 231 HLGPIDAALQARLRKPPPDRIVQV----LRLGAAQLLVL-KTPAHAAVSATVDLAASQKG 285 Query: 116 AEDSHKFVNGVLDKAAPV 133 + VN VL + Sbjct: 286 GQAFKGLVNAVLRGLSRE 303 >UniRef50_D1B789 Fmu (Sun) domain protein n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B789_THEAS Length = 430 Score = 61.9 bits (150), Expect = 6e-09, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 39/115 (33%), Gaps = 8/115 (6%) Query: 23 SQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEK 82 ++ + + + D L+ G + +++ L R +EL V + Sbjct: 9 KGAFASEALR--IVSEGMSPEDRRLASLLVYGALRRRSLWRNMVERRLKRPFKELKPVTR 66 Query: 83 AVLRIALY---ELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVI 134 L I EL P +++ + K+ GAED + VL + Sbjct: 67 DGLIIGAAALMELRNFRPGPLYGGLSQCL---KAEGAEDQVPILVAVLKRIEREG 118 >UniRef50_Q3YSG7 Putative uncharacterized protein n=1 Tax=Ehrlichia canis str. Jake RepID=Q3YSG7_EHRCJ Length = 148 Score = 61.2 bits (148), Expect = 1e-08, Method: Composition-based stats. Identities = 17/119 (14%), Positives = 48/119 (40%), Gaps = 9/119 (7%) Query: 20 WQLSQNDIADV------EYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL--S 71 + I D+ Y+ D+ +D +++ + ++ + +L Sbjct: 1 MIFNNYTINDIDNLIDYLYEMKEVLDLIQIDNQLLIKIMNTMLLTFNTINSTIATFLNEK 60 Query: 72 RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 ++ + + ++++ A+ EL S+ + INE + +A + F+N +L++ Sbjct: 61 WSIDRINLISLSIIKTAVCELI-CSNTDAVIIINEYVNIASHILEKTEVNFINAILNQV 118 >UniRef50_C0ADS6 Fmu (Sun) domain protein (Fragment) n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0ADS6_9BACT Length = 201 Score = 60.8 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 50/135 (37%), Gaps = 16/135 (11%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 A A + L W + + + A ++ + L+ G + ++G++ P Sbjct: 17 AWLAAARLLVRWLDERARVDGLLAVLPA--NLGRTGRARCQNLVLGALRHLGRIEGIITP 74 Query: 69 YLSRLLEELGQVEKAVLRIALYELS------KRSDVPYKVAINEAIELAKSFGAEDSHKF 122 +SR +AV +A YEL + V + A+E K ++ + Sbjct: 75 LMSR---MPRAEVQAVFLLAGYELIEGGGDGHVAKVAHH-----AVEQTKRLASQAEARM 126 Query: 123 VNGVLDKAAPVIRPN 137 VN ++ K A + Sbjct: 127 VNAIVRKLASALADE 141 >UniRef50_A6DSU1 tRNA and rRNA cytosine-C5-methylase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DSU1_9BACT Length = 407 Score = 60.0 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 42/125 (33%), Gaps = 5/125 (4%) Query: 12 CAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLS 71 A Q L +W S N D+E L + D+ +L V L+ ++K Sbjct: 12 LATQVLKNWTQSHNF--DLELNRLRRSGNHESDLKRASQLCLCVFRKKESLEKIVKKLSQ 69 Query: 72 RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAA 131 + +L ++ + + + + A+E AK ++ F+N K Sbjct: 70 KRPRG---RVMHLLLPSMAAMLYMDKITPQGFADSAVEAAKKILSKHEANFLNSFFHKLV 126 Query: 132 PVIRP 136 Sbjct: 127 DQKEN 131 >UniRef50_UPI000169938E Sun protein n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI000169938E Length = 104 Score = 57.7 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 6/105 (5%) Query: 1 MKPAARRRA---RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVAT 57 M R+ A R A + L L ++D+ + L D D +EL GV Sbjct: 3 MLATQRKSAADPRLIAARVLRDV-LKGRSLSDLLPERLNGLD-DPRDRALAQELCYGVMR 60 Query: 58 NTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKV 102 L L+ L + L+ Q +A++ I LY+LS+ V Sbjct: 61 GYPRLQALVGLLLKKPLKAKDQDLQALILIGLYQLSEM-RVAAHA 104 >UniRef50_C0B8Y2 Putative uncharacterized protein n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0B8Y2_9FIRM Length = 77 Score = 56.9 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 2/68 (2%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNTAYLDGLMKP 68 RE A+ L + V Q L + + D + L G LD ++ Sbjct: 11 RELALMILLEIE-RGEKSHIVLRQVLEKYQYLSKQDRAFLTRLAEGTTERRIELDYIINQ 69 Query: 69 YLSRLLEE 76 + E+ Sbjct: 70 FSKVKTEK 77 >UniRef50_Q98R41 Putative uncharacterized protein MYPU_1690 n=1 Tax=Mycoplasma pulmonis RepID=Q98R41_MYCPU Length = 160 Score = 56.9 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 60/135 (44%), Gaps = 11/135 (8%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 +R +R + +Y W LS++++ + +++ ++L + N + L Sbjct: 20 KRLSRFLMICEIYKWYLSESNLDINDDFVNQAFSLEE------NKVLKLILKNKTKFENL 73 Query: 66 MKPYLSR---LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF-GAEDSHK 121 + +L E++ + KA++ ++ D+ V I+EA+E++K + Sbjct: 74 ISKFLKSNSLKWEQILPLIKAIILFFSVQI-SLQDLDGPVLISEALEISKDLIYEKKEVA 132 Query: 122 FVNGVLDKAAPVIRP 136 F+N +LDK + + Sbjct: 133 FINAILDKISKFFKE 147 >UniRef50_C8WDB8 Fmu (Sun) domain protein n=3 Tax=Zymomonas mobilis RepID=C8WDB8_ZYMMN Length = 468 Score = 55.0 bits (132), Expect = 7e-07, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 47/139 (33%), Gaps = 14/139 (10%) Query: 2 KPAARRRA-------RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAG 54 +P R+ A R+ A+Q L + + V + ++ D L A Sbjct: 34 RPPQRKNAQPIGLPVRKAALQLLEAVLRQGLPLEQVIGRITQGLK-QNADRALVHALAAA 92 Query: 55 VATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 V LD L+ ++ L + VLR+AL + P VAI + L Sbjct: 93 VLRWCHDLDQLIDSATAKPLAP-DVKARMVLRMALAQKLVLKQ-PAHVAIATVLPLV--- 147 Query: 115 GAEDSHKFVNGVLDKAAPV 133 + V+GV Sbjct: 148 -DGGPRRLVHGVYGSLDRR 165 >UniRef50_Q2NJE9 N utilization substance protein B n=4 Tax=Candidatus Phytoplasma RepID=Q2NJE9_AYWBP Length = 138 Score = 53.8 bits (129), Expect = 2e-06, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 67/137 (48%), Gaps = 16/137 (11%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLM 66 R R ++ LY + QN++ + + +F+++ T ++D ++ Sbjct: 11 RLLRIELMKLLYQYDFYQNNLTLSQTNT-------NPIFTFFQKI----ITKLKFIDEII 59 Query: 67 KPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG---AEDSHKF 122 L + L +V++A++R+A YEL +++ + + I+EAIE+ K F E HKF Sbjct: 60 TKSLYDYKINRLNKVDRAIIRLATYELL-ETNISHAIIIDEAIEITKQFCNLNDEKQHKF 118 Query: 123 VNGVLDKAAPVIRPNKK 139 N +LD+ ++ KK Sbjct: 119 NNKLLDQIYRQLQMYKK 135 >UniRef50_A4T0M4 Sun protein n=2 Tax=Polynucleobacter necessarius RepID=A4T0M4_POLSQ Length = 438 Score = 53.1 bits (127), Expect = 3e-06, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 45/131 (34%), Gaps = 17/131 (12%) Query: 12 CAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLS 71 A QA+ +S + +V + + + + L L+K ++ Sbjct: 18 IAAQAISEV-MSGRSLTEVLDE------LDAHERPIVQSLTFDALRKWVRSHELIKQFV- 69 Query: 72 RLLEELGQVEKAVLRIALYELSKRSDVPY-----KVAINEAIELAKSFG-AEDSHKFVNG 125 + +L +A+ L R+D +++A+ + + VN Sbjct: 70 --PKTPPPEVDHLLSVAIA-LFIRNDADDKGYAVHTVVDQAVRACGEYDQTLYAKGLVNA 126 Query: 126 VLDKAAPVIRP 136 VL K + ++P Sbjct: 127 VLRKVSLALQP 137 >UniRef50_Q5P4P8 tRNA and rRNA cytosine-C5-methylases sun n=8 Tax=Betaproteobacteria RepID=Q5P4P8_AZOSE Length = 447 Score = 49.2 bits (117), Expect = 4e-05, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 42/121 (34%), Gaps = 6/121 (4%) Query: 17 LYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLE 75 L L ++ + + L D R+L G + D +++ L + L Sbjct: 38 LVETVLGGANLTEAYERLLRANPGWPDATRGAVRDLAWGTLRDYGRGDVVLRRLLHKPLP 97 Query: 76 ELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIR 135 +AL+ L R D +++A++ A + A VNGVL K Sbjct: 98 VALHALLL---VALHRLEHRPD-QAHTVVDQAVDAA-AVLAPGLKGVVNGVLRKRLRDEH 152 Query: 136 P 136 Sbjct: 153 E 153 >UniRef50_A5B766 Putative uncharacterized protein n=1 Tax=Vitis vinifera RepID=A5B766_VITVI Length = 360 Score = 48.4 bits (115), Expect = 8e-05, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 41/126 (32%), Gaps = 37/126 (29%) Query: 45 VLYFRELLAGVAT----NTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPY 100 + R+LL V + +D + P +E +L +A+ E++ + Sbjct: 221 RSFTRKLLVAVVDKWNSHVLVIDKVAPPNWKNEPAGR-ILELCILHLAMSEIAVL-GTRH 278 Query: 101 KVAINE-------------------------------AIELAKSFGAEDSHKFVNGVLDK 129 ++ INE A++LAK F + + +NG L Sbjct: 279 QIVINEVNSFSFSLSFSHDLPVKCISTSLTLIWLLMKAVDLAKRFCDGAAPRIINGCLRT 338 Query: 130 AAPVIR 135 + Sbjct: 339 FVKDLE 344 >UniRef50_Q2T2A8 Sun protein n=76 Tax=Proteobacteria RepID=Q2T2A8_BURTA Length = 571 Score = 48.1 bits (114), Expect = 8e-05, Method: Composition-based stats. Identities = 12/94 (12%), Positives = 29/94 (30%), Gaps = 9/94 (9%) Query: 45 VLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKV-- 102 +++ D L+ +++ A+L A L + Sbjct: 172 RGAIQDIAYRAMRRRGTADWLIAQLVAKAP---PAHVHALLVCAFALLVDDDEHAAYAPF 228 Query: 103 -AINEAIEL--AKSFGAEDSHKFVNGVLDKAAPV 133 +++A+ A+ + + VN VL + Sbjct: 229 TVVDQAVTAIGARRECS-FAKGLVNAVLRRFLRE 261 >UniRef50_Q7NAX6 Putative uncharacterized protein n=1 Tax=Mycoplasma gallisepticum RepID=Q7NAX6_MYCGA Length = 132 Score = 46.9 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 22/137 (16%), Positives = 52/137 (37%), Gaps = 13/137 (9%) Query: 1 MKPA----ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVA 56 MK ++ + R + +Y L ++ ++ +D+ D + G+ Sbjct: 3 MKKQANQRSQYQIRYDRLTFIYQALLLDLNLDEIYQAISQLEDL--KDQEFLTN-WTGLI 59 Query: 57 TNTAYLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 + + +L L + KA+ + + E + I++A +L + + Sbjct: 60 NQVPTI---VSAHLKESWSWNRLDYMIKALFNLVITEAKVL-KTEKAILISQATKLIQEY 115 Query: 115 GAEDSHKFVNGVLDKAA 131 G +S K V+ +L+K Sbjct: 116 GDLNSIKLVSAILNKVI 132 >UniRef50_C6NTF2 Ribosomal RNA small subunit methyltransferase B n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NTF2_9GAMM Length = 443 Score = 43.8 bits (103), Expect = 0.002, Method: Composition-based stats. Identities = 7/41 (17%), Positives = 15/41 (36%) Query: 99 PYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 P +N+ + E + VN +L + P ++ Sbjct: 91 PDFAVVNDWVGACALLHKEWARGLVNALLRRYLREREPLEE 131 >UniRef50_B6IQ69 tRNA and rRNA cytosine-C5-methylase, putative n=1 Tax=Rhodospirillum centenum SW RepID=B6IQ69_RHOCS Length = 456 Score = 42.7 bits (100), Expect = 0.004, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 29/87 (33%), Gaps = 10/87 (11%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNT 59 M PAAR +A A+ L + + + QF + + D L+ V + Sbjct: 1 MTPAARIQA---AIDLLSEIEATPRPADALVSQFFRNRRYIGAKDRQGVAGLVYSVLRHR 57 Query: 60 AYLDGLMKPYLSRLLEELGQVEKAVLR 86 L + + +A+L Sbjct: 58 GRLGWWLDRC------NVMPTPRALLL 78 >UniRef50_D0ME27 Fmu (Sun) domain protein n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0ME27_RHOM4 Length = 434 Score = 42.3 bits (99), Expect = 0.005, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 1/50 (2%) Query: 11 ECAVQALYSWQLSQNDIADVEYQFLA-EQDVKDVDVLYFRELLAGVATNT 59 E V L S V QF + + D + E + G+ + Sbjct: 16 EAVVTVLREILRSPLPADTVLQQFFRKHRKMGKRDRAFVAETVYGMLRHY 65 >UniRef50_D0KW91 Fmu (Sun) domain protein n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KW91_HALNC Length = 430 Score = 41.9 bits (98), Expect = 0.006, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 18/58 (31%), Gaps = 1/58 (1%) Query: 11 ECAVQALYSWQLSQNDIADVEYQ-FLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 + A L F AE+ + D + L+ V + LD L+ Sbjct: 24 QRAAAVLDVILSDGVPSDRALQHCFRAERQMGKRDRAQLQTLVFFVLRHWRLLDELLG 81 >UniRef50_UPI000196CC25 hypothetical protein CATMIT_02482 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196CC25 Length = 80 Score = 41.5 bits (97), Expect = 0.008, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 2/74 (2%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKD--VDVLYFRELLAGVATN 58 M+ R+ ARE AV A+Y W +++ A++ + + + L+ V N Sbjct: 1 MEKTIRQIAREKAVIAVYQWLTVDASKEELKEYVHADEALIEGRSAEQFCYWLIDTVMEN 60 Query: 59 TAYLDGLMKPYLSR 72 + L+ L + Sbjct: 61 KGSYEALLNTKLKK 74 >UniRef50_C5KW57 Putative uncharacterized protein (Fragment) n=3 Tax=Perkinsus marinus ATCC 50983 RepID=C5KW57_9ALVE Length = 294 Score = 41.5 bits (97), Expect = 0.008, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%) Query: 88 ALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAP 132 A +EL +P V INEA LAK F S V+ +++ Sbjct: 2 AAFELLNHQHIPTTVVINEANSLAKEFC-PRSQTLVHASVNRMIE 45 >UniRef50_C5CKF6 Sun protein n=5 Tax=Betaproteobacteria RepID=C5CKF6_VARPS Length = 442 Score = 41.1 bits (96), Expect = 0.010, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 26/90 (28%), Gaps = 2/90 (2%) Query: 48 FRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEA 107 + L V + L + R L ++ P +++A Sbjct: 40 VQALGFQVLRWLGRAEALRRHLAKRTPPPLPDALLCTALALAWDAQHAPYEP-FTLVDQA 98 Query: 108 IELAKSFGAEDS-HKFVNGVLDKAAPVIRP 136 +E AK A + F+N L + Sbjct: 99 VEAAKRNPATRAQASFINACLRRFLRERDE 128 >UniRef50_A1WK57 Sun protein n=17 Tax=cellular organisms RepID=A1WK57_VEREI Length = 470 Score = 40.0 bits (93), Expect = 0.027, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 36/130 (27%), Gaps = 18/130 (13%) Query: 13 AVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSR 72 AV S V A+ + LL V L R Sbjct: 37 AVAVALQAIRSGQSGTAVLAAVDADL------RPGVQALLFQVLRQAGR-----AELLRR 85 Query: 73 LL--EELGQVEKAVLRIALYELSKRSDVPYKV---AINEAIELAKSFGAEDS-HKFVNGV 126 L A+L +AL L + +N+A+E AK A + F+N Sbjct: 86 QLAARTPPPAVDALLCVALA-LCWNPEDAPYAPFTLVNQAVEAAKHSAAARAQSAFINAC 144 Query: 127 LDKAAPVIRP 136 L + Sbjct: 145 LRRFLREREA 154 >UniRef50_Q2RXU7 tRNA/rRNA cytosine-C5-methylase n=8 Tax=Alphaproteobacteria RepID=Q2RXU7_RHORT Length = 454 Score = 38.8 bits (90), Expect = 0.057, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 29/88 (32%), Gaps = 5/88 (5%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNT 59 M PAAR + CA+ L + + F+ + + D L + Sbjct: 1 MTPAARVQ---CAIDLLVDIDATNRPADGIASAFVRARRFMGSKDRRAVTALAWSTLRHR 57 Query: 60 AYLDGLMKPYLSRLLEELGQVEKAVLRI 87 A L L+ + + V +L + Sbjct: 58 ARLSWLIDRF-GGTPKARALVIAHLLVV 84 >UniRef50_Q8TH02 tRNA/rRNA cytosine-C5-methylase n=1 Tax=Methanopyrus kandleri RepID=Q8TH02_METKA Length = 444 Score = 38.4 bits (89), Expect = 0.064, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 37/115 (32%), Gaps = 3/115 (2%) Query: 14 VQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYF-RELLAGVATNTAYLDGLMKPYLS- 71 + L S + + Y+ L L + + ++ + Sbjct: 11 ARILAEHYRSGVSLKESFYRALDNPFSIPSHRARAIHRRLMELGKRLGLCEEILDDVIQS 70 Query: 72 RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGV 126 E+LG K VL A E+ P V + A +AK ++ FV+ V Sbjct: 71 GSFEDLGPELKGVLVTAADEMLFEGTSPALVT-DAATRVAKELVSDRVADFVHAV 124 >UniRef50_Q8TGY3 tRNA/rRNA cytosine-C5-methylase n=1 Tax=Methanopyrus kandleri RepID=Q8TGY3_METKA Length = 450 Score = 38.0 bits (88), Expect = 0.087, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 3/95 (3%) Query: 11 ECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL 70 E ++ L + + + E + LL V LD +++ L Sbjct: 14 EIVLRTLVKAERIK-PTQYARRLVMKEMNPSREARSVSAGLLYSVLQKRGLLDEVIEDVL 72 Query: 71 S--RLLEELGQVEKAVLRIALYELSKRSDVPYKVA 103 + EL + RIA+ E+ P +VA Sbjct: 73 EITDDVTELDTWVRNAARIAVNEVVFEDGDPDEVA 107 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_A4VHT5 N utilization substance protein B homolog n=23 T... 158 5e-38 UniRef50_A5D1B7 tRNA and rRNA cytosine-C5-methylases n=6 Tax=Clo... 152 3e-36 UniRef50_A7VUU4 Putative uncharacterized protein n=1 Tax=Clostri... 152 3e-36 UniRef50_D1BMC4 Sun protein n=3 Tax=Veillonella RepID=D1BMC4_VEIPT 152 3e-36 UniRef50_C9R7W0 NusB antitermination factor n=1 Tax=Ammonifex de... 152 4e-36 UniRef50_A3DCX8 Sun protein n=5 Tax=Clostridium RepID=A3DCX8_CLOTH 150 1e-35 UniRef50_A7ZIG9 N utilization substance protein B homolog n=118 ... 150 1e-35 UniRef50_Q1IFL9 N utilization substance protein B homolog n=12 T... 149 2e-35 UniRef50_Q48DC2 N utilization substance protein B homolog n=51 T... 149 2e-35 UniRef50_C5BS84 N utilization substance protein B homolog n=2 Ta... 149 3e-35 UniRef50_A8FD39 rRNA SAM-dependent methyltransferase RmsB n=3 Ta... 148 4e-35 UniRef50_B3QZ49 Sun protein n=1 Tax=Chloroherpeton thalassium AT... 147 1e-34 UniRef50_A3DDP0 N utilization substance protein B homolog n=5 Ta... 146 3e-34 UniRef50_Q2RK22 Sun protein n=3 Tax=Clostridia RepID=Q2RK22_MOOTA 145 3e-34 UniRef50_A5D319 N utilization substance protein B homolog n=3 Ta... 145 5e-34 UniRef50_D2RNU3 Sun protein n=3 Tax=Veillonellaceae RepID=D2RNU3... 144 6e-34 UniRef50_Q0AD60 N utilization substance protein B homolog n=3 Ta... 144 7e-34 UniRef50_C6D4F5 Sun protein n=87 Tax=Bacilli RepID=C6D4F5_PAESJ 144 8e-34 UniRef50_B6IZ82 N utilization substance protein B homolog n=6 Ta... 143 1e-33 UniRef50_A1W9I4 N utilization substance protein B homolog n=6 Ta... 143 1e-33 UniRef50_C4ZEV6 Sun protein n=4 Tax=Clostridiales RepID=C4ZEV6_E... 143 2e-33 UniRef50_B0MGA0 Putative uncharacterized protein n=2 Tax=Clostri... 143 2e-33 UniRef50_A0Q113 Sun protein n=35 Tax=Clostridium RepID=A0Q113_CLONN 143 2e-33 UniRef50_B3EF03 Sun protein n=11 Tax=Chlorobiaceae RepID=B3EF03_... 143 2e-33 UniRef50_B0A9Y2 Putative uncharacterized protein n=2 Tax=Clostri... 143 2e-33 UniRef50_A7C6S2 Transcription antitermination protein NusB n=1 T... 142 3e-33 UniRef50_B3DWQ3 N utilization substance protein B homolog n=1 Ta... 142 3e-33 UniRef50_Q2YD50 N utilization substance protein B homolog n=4 Ta... 142 3e-33 UniRef50_Q0K7T8 N utilization substance protein B homolog n=70 T... 142 4e-33 UniRef50_Q31FT2 N utilization substance protein B homolog n=1 Ta... 142 4e-33 UniRef50_B0TEI6 N utilization substance protein B homolog n=1 Ta... 141 5e-33 UniRef50_C7HWX1 NusB antitermination factor n=1 Tax=Thiomonas in... 141 7e-33 UniRef50_Q493G9 N utilization substance protein B homolog n=3 Ta... 141 7e-33 UniRef50_A8FF16 N utilization substance protein B homolog n=28 T... 141 7e-33 UniRef50_A8MH88 Sun protein n=7 Tax=Clostridiaceae RepID=A8MH88_... 141 8e-33 UniRef50_UPI0001C36EDB sun protein n=1 Tax=Ruminococcus flavefac... 141 8e-33 UniRef50_C8W0Z5 NusB antitermination factor n=1 Tax=Desulfotomac... 141 9e-33 UniRef50_C0EFK3 Putative uncharacterized protein n=1 Tax=Clostri... 140 1e-32 UniRef50_A6NUS8 Putative uncharacterized protein n=1 Tax=Bactero... 140 1e-32 UniRef50_A9BVN7 N utilization substance protein B homolog n=7 Ta... 140 1e-32 UniRef50_D0L1W4 NusB antitermination factor n=1 Tax=Halothiobaci... 139 2e-32 UniRef50_B9L0C6 Transcription antitermination factor NusB n=2 Ta... 139 2e-32 UniRef50_D2LH50 NusB antitermination factor n=1 Tax=Rhodomicrobi... 139 3e-32 UniRef50_Q21F20 N utilization substance protein B homolog n=5 Ta... 138 4e-32 UniRef50_UPI0001C335A0 ribosomal RNA small subunit methyltransfe... 138 4e-32 UniRef50_C0WD86 SUN protein n=1 Tax=Acidaminococcus sp. D21 RepI... 138 4e-32 UniRef50_Q1PUX1 Putative uncharacterized protein n=1 Tax=Candida... 138 4e-32 UniRef50_P94464 Ribosomal RNA small subunit methyltransferase B ... 138 5e-32 UniRef50_B1HQE5 Ribosomal RNA small subunit methyltransferase B ... 138 6e-32 UniRef50_A0LEK0 Sun protein n=1 Tax=Syntrophobacter fumaroxidans... 138 6e-32 UniRef50_Q67NA9 N utilization substance protein B homolog n=2 Ta... 138 6e-32 UniRef50_A8RWU3 Putative uncharacterized protein n=4 Tax=Clostri... 138 6e-32 UniRef50_B8FJ78 N utilization substance protein B homolog n=2 Ta... 138 7e-32 UniRef50_Q3JCY0 N utilization substance protein B homolog n=2 Ta... 138 7e-32 UniRef50_B1YIQ1 Sun protein n=2 Tax=Exiguobacterium RepID=B1YIQ1... 138 7e-32 UniRef50_C4KD91 NusB antitermination factor n=1 Tax=Thauera sp. ... 137 8e-32 UniRef50_Q5X720 N utilization substance protein B homolog n=6 Ta... 137 9e-32 UniRef50_C5TIT6 Transcription antitermination factor NusB n=5 Ta... 137 9e-32 UniRef50_B3U4H5 Transcription antitermination protein n=1 Tax=Ca... 137 1e-31 UniRef50_Q2RIA9 N utilization substance protein B homolog n=1 Ta... 137 1e-31 UniRef50_C6X9V7 NusB antitermination factor n=1 Tax=Methylovorus... 137 1e-31 UniRef50_C4FT85 Putative uncharacterized protein n=1 Tax=Catonel... 137 1e-31 UniRef50_C5EIZ3 Putative uncharacterized protein n=2 Tax=Clostri... 137 1e-31 UniRef50_C0N8C8 Transcription antitermination factor NusB n=1 Ta... 137 1e-31 UniRef50_Q2BM00 NusB protein n=1 Tax=Neptuniibacter caesariensis... 137 1e-31 UniRef50_C8WW78 Sun protein n=2 Tax=Alicyclobacillus acidocaldar... 137 2e-31 UniRef50_P72943 Ribosomal RNA small subunit methyltransferase B ... 137 2e-31 UniRef50_B0S1M1 N utilization substance protein B homolog n=2 Ta... 136 2e-31 UniRef50_B9M341 Sun protein n=4 Tax=Geobacter RepID=B9M341_GEOSF 136 2e-31 UniRef50_A8PLC7 Transcription antitermination factor NusB n=1 Ta... 136 2e-31 UniRef50_B8FQ61 N utilization substance protein B homolog n=2 Ta... 136 2e-31 UniRef50_Q479L3 N utilization substance protein B homolog n=3 Ta... 136 2e-31 UniRef50_A5FQ51 N utilization substance protein B homolog n=5 Ta... 136 2e-31 UniRef50_B8FHH2 Sun protein n=1 Tax=Desulfatibacillum alkenivora... 136 2e-31 UniRef50_C0GIQ4 Sun protein n=1 Tax=Dethiobacter alkaliphilus AH... 136 3e-31 UniRef50_C6WU13 NusB antitermination factor n=1 Tax=Methylotener... 135 3e-31 UniRef50_C9RZP8 Sun protein n=5 Tax=Bacillales RepID=C9RZP8_GEOSY 135 3e-31 UniRef50_B0UU23 N utilization substance protein B homolog n=33 T... 135 4e-31 UniRef50_B8D9P0 N utilization substance protein B homolog n=5 Ta... 135 4e-31 UniRef50_B8CWT0 Sun protein n=1 Tax=Halothermothrix orenii H 168... 135 5e-31 UniRef50_Q0AZF7 N utilization substance protein B homolog n=1 Ta... 135 5e-31 UniRef50_A0L3Z8 NusB antitermination factor n=1 Tax=Magnetococcu... 135 6e-31 UniRef50_D0BMY2 Ribosomal RNA small subunit methyltransferase B ... 135 6e-31 UniRef50_C0GMV1 NusB antitermination factor n=1 Tax=Desulfonatro... 134 6e-31 UniRef50_Q1ISD3 N utilization substance protein B homolog n=2 Ta... 134 7e-31 UniRef50_C4L3F7 N utilization substance protein B homolog n=2 Ta... 134 7e-31 UniRef50_B2A2K5 Sun protein n=1 Tax=Natranaerobius thermophilus ... 134 8e-31 UniRef50_Q1N2N9 Transcription antitermination protein NusB n=1 T... 134 8e-31 UniRef50_C6PE58 NusB/RsmB/TIM44 protein n=1 Tax=Thermoanaerobact... 134 8e-31 UniRef50_C0GE32 NusB antitermination factor n=1 Tax=Dethiobacter... 134 9e-31 UniRef50_C0EY63 Putative uncharacterized protein n=1 Tax=Eubacte... 134 1e-30 UniRef50_C1DB31 N utilization substance protein B homolog n=3 Ta... 133 1e-30 UniRef50_C7LSH4 NusB antitermination factor n=1 Tax=Desulfomicro... 133 1e-30 UniRef50_A6Q4Q9 N utilization substance protein B homolog n=20 T... 133 1e-30 UniRef50_C9LLK5 Ribosomal RNA small subunit methyltransferase B ... 133 1e-30 UniRef50_UPI00006A2BCA UPI00006A2BCA related cluster n=1 Tax=Xen... 133 1e-30 UniRef50_A0Q099 N utilization substance protein B homolog n=3 Ta... 133 1e-30 UniRef50_A5F5Z6 N utilization substance protein B homolog n=91 T... 133 2e-30 UniRef50_C8WLN1 NusB antitermination factor n=2 Tax=Coriobacteri... 133 2e-30 UniRef50_B3QV72 N utilization substance protein B homolog n=1 Ta... 133 2e-30 UniRef50_D1VSJ6 Transcription antitermination factor NusB n=1 Ta... 133 2e-30 UniRef50_Q1D350 N utilization substance protein B homolog n=2 Ta... 132 3e-30 UniRef50_A8ZTU6 N utilization substance protein B homolog n=1 Ta... 132 3e-30 UniRef50_B7KB91 Sun protein n=19 Tax=Cyanobacteria RepID=B7KB91_... 132 3e-30 UniRef50_C5CI90 NusB antitermination factor n=1 Tax=Kosmotoga ol... 132 4e-30 UniRef50_A6W2L6 N utilization substance protein B homolog n=4 Ta... 132 4e-30 UniRef50_Q3BXH9 N utilization substance protein B homolog n=20 T... 132 4e-30 UniRef50_D1CCN3 NusB antitermination factor n=1 Tax=Thermobaculu... 132 4e-30 UniRef50_Q3A7Z0 Sun protein n=2 Tax=Desulfuromonadales RepID=Q3A... 132 5e-30 UniRef50_Q3A4L2 N utilization substance protein B homolog n=2 Ta... 131 6e-30 UniRef50_C6R1D5 Ribosomal RNA small subunit methyltransferase B ... 131 6e-30 UniRef50_C4V0R0 rRNA SAM-dependent methyltransferase RmsB n=1 Ta... 131 6e-30 UniRef50_Q1H424 N utilization substance protein B homolog n=2 Ta... 131 6e-30 UniRef50_C0W1K3 16S rRNA m(5)C 967 methyltransferase n=1 Tax=Act... 131 6e-30 UniRef50_A8LE23 Fmu (Sun) domain protein n=3 Tax=Frankia RepID=A... 131 6e-30 UniRef50_Q136T4 N utilization substance protein B homolog n=36 T... 131 7e-30 UniRef50_B0K9D9 N utilization substance protein B homolog n=10 T... 131 7e-30 UniRef50_Q30YL1 N utilization substance protein B homolog n=5 Ta... 131 7e-30 UniRef50_Q0AXL7 Putative uncharacterized protein n=1 Tax=Syntrop... 131 8e-30 UniRef50_A6CAX2 Transcription antitermination protein NusB n=1 T... 131 8e-30 UniRef50_UPI00016C01E8 sun protein n=1 Tax=Epulopiscium sp. 'N.t... 130 1e-29 UniRef50_B2IXU2 Sun protein n=1 Tax=Nostoc punctiforme PCC 73102... 130 1e-29 UniRef50_A9KM96 Sun protein n=1 Tax=Clostridium phytofermentans ... 130 1e-29 UniRef50_A9ET18 N utilization substance protein B homolog n=1 Ta... 130 1e-29 UniRef50_UPI0001C42A93 transcription antitermination protein Nus... 130 1e-29 UniRef50_B1LAQ8 N utilization substance protein B homolog n=10 T... 130 1e-29 UniRef50_B1H071 Transcription antitermination factor NusB n=1 Ta... 130 1e-29 UniRef50_A8ZUK3 Sun protein n=1 Tax=Desulfococcus oleovorans Hxd... 130 1e-29 UniRef50_UPI00016C38F9 Fmu, rRNA SAM-dependent methyltransferase... 130 1e-29 UniRef50_D2L8L5 NusB antitermination factor n=1 Tax=Desulfovibri... 130 1e-29 UniRef50_D2NSI1 tRNA and rRNA cytosine-C5-methylase n=2 Tax=Micr... 130 2e-29 UniRef50_C9L6W4 Ribosomal RNA small subunit methyltransferase B ... 130 2e-29 UniRef50_Q5WF59 N utilization substance protein B homolog n=2 Ta... 130 2e-29 UniRef50_B0MPP7 Putative uncharacterized protein n=1 Tax=Eubacte... 130 2e-29 UniRef50_B5JUN2 Transcription antitermination factor NusB n=1 Ta... 130 2e-29 UniRef50_B3QJK9 N utilization substance protein B homolog n=9 Ta... 129 2e-29 UniRef50_B2S4Q2 N utilization substance protein B homolog n=3 Ta... 129 2e-29 UniRef50_Q2JK83 Ribosomal RNA small subunit methyltransferase B ... 129 2e-29 UniRef50_B5ELV9 NusB antitermination factor n=3 Tax=Acidithiobac... 129 2e-29 UniRef50_B4D6X5 NusB antitermination factor n=1 Tax=Chthoniobact... 129 3e-29 UniRef50_B7IXH3 N utilization substance protein B homolog n=82 T... 129 3e-29 UniRef50_Q7A601 SA1060 protein n=63 Tax=Staphylococcaceae RepID=... 129 3e-29 UniRef50_B9L730 Transcription antitermination factor NusB n=2 Ta... 129 3e-29 UniRef50_Q6AP93 N utilization substance protein B homolog n=1 Ta... 129 3e-29 UniRef50_C8PMR7 Transcription antitermination factor NusB n=1 Ta... 129 3e-29 UniRef50_A8ST69 Putative uncharacterized protein n=2 Tax=Clostri... 128 4e-29 UniRef50_D0LLT9 Sun protein n=1 Tax=Haliangium ochraceum DSM 143... 128 4e-29 UniRef50_C6CU26 NusB antitermination factor n=3 Tax=Bacillales R... 128 4e-29 UniRef50_B5GBK3 RNA-binding Sun protein n=1 Tax=Streptomyces sp.... 128 4e-29 UniRef50_B0KA07 Sun protein n=11 Tax=Thermoanaerobacterales RepI... 128 5e-29 UniRef50_Q2LRX5 16S rRNA m(5)C 967 methyltransferase n=1 Tax=Syn... 128 6e-29 UniRef50_A0LI21 N utilization substance protein B homolog n=4 Ta... 128 6e-29 UniRef50_C5S6Y6 NusB antitermination factor n=1 Tax=Allochromati... 128 6e-29 UniRef50_Q5F9Y0 N utilization substance protein B homolog n=22 T... 128 7e-29 UniRef50_UPI0001BC34B4 sun protein n=1 Tax=Butyrivibrio crossotu... 128 7e-29 UniRef50_B4WR53 Ribosomal RNA small subunit methyltransferase B ... 128 7e-29 UniRef50_B1W456 N utilization substance protein B homolog n=7 Ta... 127 8e-29 UniRef50_A5KNU7 Putative uncharacterized protein n=4 Tax=Clostri... 127 9e-29 UniRef50_Q2YYB7 N utilization substance protein B homolog n=59 T... 127 1e-28 UniRef50_Q5P3H4 N utilization substance protein B homolog n=9 Ta... 127 1e-28 UniRef50_C7MCY2 tRNA/rRNA cytosine-C5-methylase n=2 Tax=Micrococ... 127 1e-28 UniRef50_UPI0001745093 NusB antitermination factor n=1 Tax=Verru... 127 1e-28 UniRef50_Q1IIS1 Sun protein n=1 Tax=Candidatus Koribacter versat... 127 1e-28 UniRef50_B0PFT6 Putative uncharacterized protein n=1 Tax=Anaerot... 127 1e-28 UniRef50_B9LDT2 N utilization substance protein B homolog n=6 Ta... 127 1e-28 UniRef50_B2KE32 N utilization substance protein B homolog n=1 Ta... 127 2e-28 UniRef50_Q6MNX9 N utilization substance protein B homolog n=1 Ta... 127 2e-28 UniRef50_Q31J86 Ribosomal RNA small subunit methyltransferase B ... 127 2e-28 UniRef50_D2B6M0 Fmu, rRNA SAM-dependent methyltransferase:Nop2p ... 127 2e-28 UniRef50_Q0TPD3 N utilization substance protein B homolog n=10 T... 126 2e-28 UniRef50_C5NYN0 Ribosomal RNA small subunit methyltransferase B ... 126 2e-28 UniRef50_A5VKQ4 Sun protein n=14 Tax=Lactobacillus RepID=A5VKQ4_... 126 2e-28 UniRef50_B8DTW1 N utilization substance protein B homolog n=16 T... 126 2e-28 UniRef50_B4SCZ7 N utilization substance protein B homolog n=2 Ta... 126 2e-28 UniRef50_C1QBG1 Transcription antitermination factor NusB n=1 Ta... 126 3e-28 UniRef50_Q1AW09 N utilization substance protein B homolog n=1 Ta... 126 3e-28 UniRef50_B7DR17 NusB antitermination factor n=1 Tax=Alicyclobaci... 125 3e-28 UniRef50_C1ZLP1 Ribosomal RNA small subunit methyltransferase Rs... 125 3e-28 UniRef50_C0ZC03 N utilization substance protein B n=1 Tax=Brevib... 125 3e-28 UniRef50_A5G3J8 N utilization substance protein B homolog n=7 Ta... 125 3e-28 UniRef50_B9XT31 Sun protein n=1 Tax=bacterium Ellin514 RepID=B9X... 125 3e-28 UniRef50_A1WVG0 N utilization substance protein B homolog n=1 Ta... 125 3e-28 UniRef50_B8DJF1 N utilization substance protein B homolog n=2 Ta... 125 4e-28 UniRef50_UPI0001B583AE RNA-binding Sun protein n=2 Tax=Actinomyc... 125 4e-28 UniRef50_A7BCC1 Putative uncharacterized protein n=1 Tax=Actinom... 125 4e-28 UniRef50_Q2LQK4 N utilization substance protein B homolog n=1 Ta... 125 4e-28 UniRef50_D1U9R7 NusB antitermination factor n=1 Tax=Desulfovibri... 125 6e-28 UniRef50_C8W9W3 NusB antitermination factor n=1 Tax=Atopobium pa... 125 6e-28 UniRef50_D0WMY6 Ribosomal RNA small subunit methyltransferase B ... 125 6e-28 UniRef50_A8SLL0 Putative uncharacterized protein n=1 Tax=Parvimo... 125 6e-28 UniRef50_C2BWI2 Ribosomal RNA small subunit methyltransferase B ... 125 6e-28 UniRef50_Q1MS16 N utilization substance protein B homolog n=1 Ta... 124 7e-28 UniRef50_B6WQ80 Putative uncharacterized protein n=1 Tax=Desulfo... 124 9e-28 UniRef50_B3DQ30 N utilization substance protein B homolog n=7 Ta... 124 9e-28 UniRef50_A4TBX3 N utilization substance protein B homolog n=18 T... 124 9e-28 UniRef50_Q3ATI5 N utilization substance protein B homolog n=9 Ta... 124 9e-28 UniRef50_C0R001 Transcription antitermination protein NusB n=1 T... 124 1e-27 UniRef50_A8SLT0 Putative uncharacterized protein n=1 Tax=Parvimo... 123 1e-27 UniRef50_C7N4M1 Transcription antitermination factor NusB n=1 Ta... 123 1e-27 UniRef50_B8ZUK7 N utilization substance protein B homolog n=16 T... 123 1e-27 UniRef50_Q983A9 N utilization substance protein B homolog n=3 Ta... 123 1e-27 UniRef50_Q3AAM1 N utilization substance protein B homolog n=1 Ta... 123 1e-27 UniRef50_C8WZ45 NusB/RsmB/TIM44 n=1 Tax=Desulfohalobium retbaens... 123 1e-27 UniRef50_C6BYC6 NusB antitermination factor n=1 Tax=Desulfovibri... 123 1e-27 UniRef50_Q6AS22 Related to SUN protein (FMU protein) n=1 Tax=Des... 123 1e-27 UniRef50_A8VXB3 Acetyl-CoA carboxylase, biotin carboxyl carrier ... 123 2e-27 UniRef50_C4DPH0 tRNA/rRNA cytosine-C5-methylase n=1 Tax=Stackebr... 123 2e-27 UniRef50_Q022D6 NusB/RsmB/TIM44 n=1 Tax=Candidatus Solibacter us... 123 2e-27 UniRef50_D0MK26 NusB antitermination factor n=1 Tax=Rhodothermus... 123 2e-27 UniRef50_B3WEW8 RRNA methylase (Putative) n=77 Tax=Bacilli RepID... 123 2e-27 UniRef50_A6NUZ5 Putative uncharacterized protein n=1 Tax=Bactero... 123 2e-27 UniRef50_A4U1B3 Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p:Antite... 123 2e-27 UniRef50_B7APZ1 Putative uncharacterized protein n=1 Tax=Bactero... 123 2e-27 UniRef50_C5CBJ2 Ribosomal RNA small subunit methyltransferase Rs... 122 2e-27 UniRef50_Q1NRI6 NusB antitermination factor n=1 Tax=delta proteo... 122 3e-27 UniRef50_C4XHY8 N utilization substance protein B homolog n=1 Ta... 122 3e-27 UniRef50_B8H535 N utilization substance protein B homolog n=4 Ta... 122 3e-27 UniRef50_C6MTY9 Sun protein n=1 Tax=Geobacter sp. M18 RepID=C6MT... 122 3e-27 UniRef50_B5YE05 N utilization substance protein B homolog n=2 Ta... 122 3e-27 UniRef50_B6GCG9 Putative uncharacterized protein n=2 Tax=Collins... 122 3e-27 UniRef50_B0PBD5 Putative uncharacterized protein n=1 Tax=Anaerot... 122 3e-27 UniRef50_D1B3U2 Transcription antitermination factor NusB n=3 Ta... 122 4e-27 UniRef50_Q2S6K8 N utilization substance protein B homolog n=1 Ta... 122 4e-27 UniRef50_Q03RR0 N utilization substance protein B homolog n=23 T... 122 4e-27 UniRef50_B2A534 N utilization substance protein B homolog n=1 Ta... 122 5e-27 UniRef50_Q5FNA1 N utilization substance protein B homolog n=1 Ta... 122 5e-27 UniRef50_B9XNZ3 NusB antitermination factor n=1 Tax=bacterium El... 122 5e-27 UniRef50_C4V2M6 Transcription antitermination protein NusB n=1 T... 121 6e-27 UniRef50_C4XT41 rRNA (Cytosine-C(5)-)-methyltransferase n=1 Tax=... 121 6e-27 UniRef50_C9KK33 Transcription antitermination factor NusB n=1 Ta... 121 6e-27 UniRef50_P71675 Putative methyltransferase Rv1407/MT1451 n=56 Ta... 121 6e-27 UniRef50_B5FCW8 Ribosomal RNA small subunit methyltransferase B ... 121 7e-27 UniRef50_A4XL79 Sun protein n=2 Tax=Clostridia RepID=A4XL79_CALS8 121 7e-27 UniRef50_C8WXH1 NusB antitermination factor n=1 Tax=Alicyclobaci... 121 7e-27 UniRef50_UPI00016C04B6 transcription termination factor n=1 Tax=... 121 7e-27 UniRef50_A3TLN6 Putative RNA-binding Sun protein n=2 Tax=Actinob... 121 7e-27 UniRef50_C3RII4 SUN protein n=10 Tax=Bacteria RepID=C3RII4_9MOLU 121 7e-27 UniRef50_A4W3P3 Transcription termination factor n=6 Tax=Strepto... 121 8e-27 UniRef50_A7HDY2 N utilization substance protein B homolog n=4 Ta... 121 8e-27 UniRef50_A7VX44 Putative uncharacterized protein n=1 Tax=Clostri... 121 9e-27 UniRef50_B0MQ18 Putative uncharacterized protein n=1 Tax=Eubacte... 121 9e-27 UniRef50_A8MFJ3 N utilization substance protein B homolog n=2 Ta... 120 1e-26 UniRef50_UPI0000E87F00 transcription antitermination protein Nus... 120 1e-26 UniRef50_B9E6Q9 N utilization substance protein B homolog n=6 Ta... 120 1e-26 UniRef50_C4G2S0 Putative uncharacterized protein n=1 Tax=Abiotro... 120 1e-26 UniRef50_D2B6P7 Transcription antitermination factor NusB n=3 Ta... 120 1e-26 UniRef50_Q4JVG6 N utilization substance protein B homolog n=5 Ta... 120 1e-26 UniRef50_C7Q4P0 Fmu (Sun) domain protein n=1 Tax=Catenulispora a... 120 1e-26 UniRef50_D2RJI2 NusB antitermination factor n=2 Tax=Acidaminococ... 120 1e-26 UniRef50_Q2SQX3 Sun protein n=1 Tax=Hahella chejuensis KCTC 2396... 120 2e-26 UniRef50_B0NZC1 Putative uncharacterized protein n=2 Tax=Clostri... 120 2e-26 UniRef50_D1PM68 Ribosomal RNA small subunit methyltransferase B ... 120 2e-26 UniRef50_A6LU43 N utilization substance protein B homolog n=6 Ta... 120 2e-26 UniRef50_C7H0C2 Transcription antitermination factor NusB n=1 Ta... 120 2e-26 UniRef50_B8FS79 Sun protein n=2 Tax=Desulfitobacterium hafniense... 120 2e-26 UniRef50_A4XLC1 N utilization substance protein B homolog n=2 Ta... 120 2e-26 UniRef50_Q3AC21 Sun protein n=1 Tax=Carboxydothermus hydrogenofo... 119 2e-26 UniRef50_A0JX79 N utilization substance protein B homolog n=3 Ta... 119 2e-26 UniRef50_C4ZCZ0 N utilization substance protein B homolog n=5 Ta... 119 2e-26 UniRef50_Q0ABQ3 N utilization substance protein B homolog n=2 Ta... 119 3e-26 UniRef50_C4FTS3 Putative uncharacterized protein n=1 Tax=Catonel... 119 3e-26 UniRef50_B1C5S4 Putative uncharacterized protein n=1 Tax=Anaerof... 119 3e-26 UniRef50_C5VC90 Transcription antitermination factor NusB n=2 Ta... 119 3e-26 UniRef50_A5GRG8 Ribosomal RNA small subunit methyltransferase B ... 119 3e-26 UniRef50_C9LUP3 Transcription antitermination factor NusB n=2 Ta... 119 3e-26 UniRef50_C8WEQ4 NusB antitermination factor n=4 Tax=Zymomonas mo... 119 4e-26 UniRef50_A5EVR1 Transcription antitermination factor NusB n=2 Ta... 118 4e-26 UniRef50_Q1Q7P9 Putative uncharacterized protein n=1 Tax=Candida... 118 4e-26 UniRef50_C8R080 Sun protein n=1 Tax=Desulfurivibrio alkaliphilus... 118 4e-26 UniRef50_B0REX0 N utilization substance protein B homolog n=4 Ta... 118 4e-26 UniRef50_C2D814 Putative uncharacterized protein n=1 Tax=Atopobi... 118 4e-26 UniRef50_C3XMJ2 Transcription termination protein n=1 Tax=Helico... 118 5e-26 UniRef50_Q03FY2 tRNA and rRNA cytosine-C5-methylase n=2 Tax=Pedi... 118 5e-26 UniRef50_B5YHQ2 N utilization substance protein B homolog n=1 Ta... 118 6e-26 UniRef50_C0AZZ3 Putative uncharacterized protein n=1 Tax=Proteus... 118 6e-26 UniRef50_D0WFZ4 Transcription antitermination factor NusB n=1 Ta... 118 6e-26 UniRef50_Q47QY5 N utilization substance protein B homolog n=21 T... 118 7e-26 UniRef50_C1I679 NusB antitermination factor n=1 Tax=Clostridium ... 118 7e-26 UniRef50_D1U6T4 NusB/RsmB/TIM44 n=1 Tax=Desulfovibrio aespoeensi... 118 8e-26 UniRef50_Q7USA9 N utilization substance protein B homolog n=2 Ta... 118 8e-26 UniRef50_A0LUG6 N utilization substance protein B homolog n=2 Ta... 118 8e-26 UniRef50_C0W3L2 rRNA (Cytosine-C(5)-)-methyltransferase n=1 Tax=... 117 9e-26 UniRef50_D1N6Z8 NusB antitermination factor n=1 Tax=Victivallis ... 117 1e-25 UniRef50_A7HX88 NusB antitermination factor n=1 Tax=Parvibaculum... 117 1e-25 UniRef50_Q1NQ57 Fmu, rRNA SAM-dependent methyltransferase n=2 Ta... 117 1e-25 UniRef50_C9RN69 NusB antitermination factor n=1 Tax=Fibrobacter ... 117 1e-25 UniRef50_Q836W8 N utilization substance protein B homolog n=39 T... 117 1e-25 UniRef50_B0CL95 N utilization substance protein B homolog n=42 T... 117 1e-25 UniRef50_B9K874 Sun protein n=6 Tax=Thermotogaceae RepID=B9K874_... 117 1e-25 UniRef50_C2GHU0 16S rRNA M(5)C 967 methyltransferase n=1 Tax=Cor... 117 1e-25 UniRef50_Q317Q8 Sun protein n=1 Tax=Desulfovibrio desulfuricans ... 117 2e-25 UniRef50_C8PUW0 NusB antitermination factor n=1 Tax=Enhydrobacte... 117 2e-25 UniRef50_D2EIA0 Transcription antitermination factor NusB n=1 Ta... 116 2e-25 UniRef50_Q12TA7 Sun protein n=8 Tax=Gammaproteobacteria RepID=Q1... 116 2e-25 UniRef50_B0VHI6 Putative 16S rRNA m5C967 methyltransferase, S-ad... 116 2e-25 UniRef50_C0VVW4 Transcription antitermination protein NusB n=2 T... 116 3e-25 UniRef50_D0LW51 NusB antitermination factor n=1 Tax=Haliangium o... 116 3e-25 UniRef50_B2VK95 Ribosomal RNA small subunit methyltransferase B ... 116 3e-25 UniRef50_A6BZY6 Sun protein n=1 Tax=Planctomyces maris DSM 8797 ... 115 3e-25 UniRef50_C4DFR3 Transcription antitermination factor NusB n=1 Ta... 115 3e-25 UniRef50_Q6NH08 N utilization substance protein B homolog n=1 Ta... 115 4e-25 UniRef50_Q5HW85 N utilization substance protein B homolog n=24 T... 115 5e-25 UniRef50_Q1JF82 N utilization substance protein B homolog n=57 T... 115 5e-25 UniRef50_C6XRR6 Fmu (Sun) domain protein n=1 Tax=Hirschia baltic... 115 5e-25 UniRef50_B0VJ63 N utilization substance protein B n=1 Tax=Candid... 115 5e-25 UniRef50_B1ZVQ6 NusB antitermination factor n=3 Tax=Verrucomicro... 115 5e-25 UniRef50_D1KDZ6 Transcription termination factor n=1 Tax=uncultu... 115 5e-25 UniRef50_Q0APG4 N utilization substance protein B homolog n=3 Ta... 115 6e-25 UniRef50_C1XPK4 NusB antitermination factor n=2 Tax=Meiothermus ... 115 6e-25 UniRef50_Q38XV0 N utilization substance protein B homolog n=9 Ta... 115 6e-25 UniRef50_Q03FZ6 N utilization substance protein B homolog n=1 Ta... 114 7e-25 UniRef50_B9CP02 Transcription antitermination factor NusB n=1 Ta... 114 7e-25 UniRef50_B0SB76 N utilization substance protein B homolog n=6 Ta... 114 8e-25 UniRef50_Q6A8H8 N utilization substance protein B homolog n=2 Ta... 114 8e-25 UniRef50_Q2WB24 tRNA and rRNA cytosine-C5-methylase n=3 Tax=Alph... 114 9e-25 UniRef50_Q0F2C5 Transcription antitermination protein NusB n=1 T... 114 9e-25 UniRef50_A5ZPE1 Putative uncharacterized protein n=4 Tax=Clostri... 114 9e-25 UniRef50_A3EVA3 Transcription antitermination factor (NusB) n=2 ... 114 9e-25 UniRef50_UPI00019779AE transcription antitermination protein Nus... 114 1e-24 UniRef50_C5RAE2 RNA methyltransferase n=3 Tax=Lactobacillales Re... 114 1e-24 UniRef50_Q6A8H0 TRNA/rRNA cytosine-C5-methylase n=3 Tax=Propioni... 113 1e-24 UniRef50_Q1DCG5 Ribosomal RNA small subunit methyltransferase B ... 113 1e-24 UniRef50_B4CZF1 Sun protein n=1 Tax=Chthoniobacter flavus Ellin4... 113 1e-24 UniRef50_C1F543 Putative ribosomal RNA small subunit methyltrans... 113 1e-24 UniRef50_B6IMS4 Transcription antitermination protein NusB, puta... 113 2e-24 UniRef50_C5WIG1 16S rRNA m(5)C 967 methyltransferase n=44 Tax=St... 113 2e-24 UniRef50_Q8DSE9 N utilization substance protein B homolog n=5 Ta... 113 2e-24 UniRef50_UPI0001BC2C1E Fmu (Sun) domain protein n=1 Tax=Brevibac... 113 2e-24 UniRef50_C7H5H8 Ribosomal RNA small subunit methyltransferase B ... 112 3e-24 UniRef50_A8G3E0 Sun protein (Fmu protein) n=7 Tax=Prochlorococcu... 112 4e-24 UniRef50_Q2BQD6 Fmu, rRNA SAM-dependent methyltransferase n=1 Ta... 112 4e-24 UniRef50_Q03W17 tRNA and rRNA cytosine-C5-methylase n=11 Tax=Lac... 112 4e-24 UniRef50_C9LLB0 Transcription antitermination factor NusB n=1 Ta... 112 4e-24 UniRef50_Q2W4S5 N utilization substance protein B homolog n=3 Ta... 112 5e-24 UniRef50_C5RKK7 NusB antitermination factor n=1 Tax=Clostridium ... 112 5e-24 UniRef50_A6DTV7 NusB antitermination factor n=1 Tax=Lentisphaera... 112 5e-24 UniRef50_C3WQ58 16S rRNA m(5)C 967 methyltransferase n=15 Tax=Fu... 112 5e-24 UniRef50_A8YVW1 rRNA methylase n=27 Tax=Lactobacillus RepID=A8YV... 112 5e-24 UniRef50_C6XHS5 Transcription antitermination protein NusB n=1 T... 111 6e-24 UniRef50_O66530 N utilization substance protein B homolog n=3 Ta... 111 6e-24 UniRef50_D1VSE3 Ribosomal RNA small subunit methyltransferase B ... 111 6e-24 UniRef50_C0EFY5 Putative uncharacterized protein n=1 Tax=Clostri... 111 7e-24 UniRef50_Q8EKR0 Ribosomal RNA small subunit methyltransferase B ... 111 8e-24 UniRef50_C1A605 Putative rRNA methyltransferase n=1 Tax=Gemmatim... 111 8e-24 UniRef50_B9E100 N utilization substance protein B homolog n=14 T... 111 8e-24 UniRef50_A3UCC3 Transcription antitermination protein NusB n=1 T... 111 8e-24 UniRef50_C6QHP1 NusB antitermination factor n=1 Tax=Hyphomicrobi... 111 8e-24 UniRef50_B5YF43 Ribosomal RNA small subunit methyltransferase B ... 111 8e-24 UniRef50_A4BK87 Putative uncharacterized protein n=1 Tax=Reineke... 111 8e-24 UniRef50_Q2NQQ2 Ribosomal RNA small subunit methyltransferase B ... 111 9e-24 UniRef50_C6BVK4 NusB/RsmB/TIM44 n=1 Tax=Desulfovibrio salexigens... 110 1e-23 UniRef50_C0XM65 rRNA SAM-dependent methyltransferase RmsB n=3 Ta... 110 1e-23 UniRef50_B1C650 Putative uncharacterized protein n=1 Tax=Anaerof... 110 1e-23 UniRef50_D2L7S0 NusB/RsmB/TIM44 n=1 Tax=Desulfovibrio sp. FW1012... 110 1e-23 UniRef50_Q057F3 N utilization substance protein B homolog n=1 Ta... 110 1e-23 UniRef50_C0GN53 NusB/RsmB/TIM44 n=1 Tax=Desulfonatronospira thio... 110 2e-23 UniRef50_C2KVE0 Possible rRNA (Cytosine-5-)-methyltransferase n=... 110 2e-23 UniRef50_A5CWS4 N utilization substance protein B n=2 Tax=sulfur... 110 2e-23 UniRef50_A5EWM0 RRNA SAM-dependent methyltransferase, Fmu n=2 Ta... 110 2e-23 UniRef50_A6VR79 Sun protein n=2 Tax=Marinomonas RepID=A6VR79_MARMS 110 2e-23 UniRef50_C0VVY3 Possible rRNA SAM-dependent methyltransferase Rm... 110 2e-23 UniRef50_D2R650 NusB antitermination factor n=2 Tax=Planctomycet... 110 2e-23 UniRef50_A1V9B6 NusB/RsmB/TIM44 n=3 Tax=Desulfovibrio vulgaris R... 110 2e-23 UniRef50_UPI0001C3796F transcription termination factor n=1 Tax=... 109 2e-23 UniRef50_C7GZX3 16S rRNA M(5)C 967 methyltransferase n=1 Tax=Eub... 109 3e-23 UniRef50_C5NYK7 Transcription antitermination factor NusB n=1 Ta... 109 3e-23 UniRef50_B5JST2 Ribosomal RNA small subunit methyltransferase B ... 109 3e-23 UniRef50_Q2J830 N utilization substance protein B homolog n=3 Ta... 109 3e-23 UniRef50_Q1J0I4 N utilization substance protein B homolog n=3 Ta... 109 3e-23 UniRef50_C7RA09 Sun protein n=1 Tax=Kangiella koreensis DSM 1606... 109 4e-23 UniRef50_Q0BTF1 N utilization substance protein B homolog n=11 T... 108 4e-23 UniRef50_UPI0001BC31DE NusB antitermination factor n=1 Tax=Butyr... 108 4e-23 UniRef50_A9KMC2 N utilization substance protein B homolog n=17 T... 108 5e-23 UniRef50_B8KLT3 Ribosomal RNA small subunit methyltransferase B ... 108 5e-23 UniRef50_Q72JL6 N utilization substance protein B homolog n=3 Ta... 108 5e-23 UniRef50_B3ERI6 Putative uncharacterized protein n=1 Tax=Candida... 108 6e-23 UniRef50_C5SLV1 NusB antitermination factor n=2 Tax=Caulobactera... 108 6e-23 UniRef50_D0MH27 Sun protein n=1 Tax=Rhodothermus marinus DSM 425... 108 7e-23 UniRef50_UPI000174635C RsmB n=1 Tax=Verrucomicrobium spinosum DS... 108 7e-23 UniRef50_B8D2G0 N utilization substance protein B homolog n=1 Ta... 108 7e-23 UniRef50_A8SZ12 Putative uncharacterized protein n=2 Tax=Clostri... 108 8e-23 UniRef50_UPI0000D5356A transcription termination factor (NusB) n... 107 9e-23 UniRef50_A9FBW8 Sun protein n=1 Tax=Sorangium cellulosum 'So ce ... 107 9e-23 UniRef50_C3XHP1 Predicted protein n=1 Tax=Helicobacter bilis ATC... 107 1e-22 UniRef50_B0MDS2 Putative uncharacterized protein n=1 Tax=Anaeros... 107 1e-22 UniRef50_C5C681 N utilization substance protein B homolog n=14 T... 107 1e-22 UniRef50_A7NB00 Transcription antitermination factor n=19 Tax=Fr... 107 1e-22 UniRef50_A4E6J4 Putative uncharacterized protein n=1 Tax=Collins... 107 1e-22 UniRef50_Q2RTC4 N utilization substance protein B homolog n=1 Ta... 107 1e-22 UniRef50_Q01T72 N utilization substance protein B homolog n=1 Ta... 107 1e-22 UniRef50_C1TMF2 Transcription antitermination factor NusB n=1 Ta... 107 1e-22 UniRef50_A8GMD2 N utilization substance protein B homolog n=15 T... 107 2e-22 UniRef50_Q0SP57 N utilization substance protein B homolog n=43 T... 107 2e-22 UniRef50_Q2SSR7 RRNA methyltransferase RsmB (Sun protein), putat... 107 2e-22 UniRef50_C7LUK3 Sun protein n=1 Tax=Desulfomicrobium baculatum D... 107 2e-22 UniRef50_A8RCQ7 Putative uncharacterized protein n=1 Tax=Eubacte... 107 2e-22 UniRef50_A5WHT3 NusB antitermination factor n=1 Tax=Psychrobacte... 106 2e-22 UniRef50_A8TL32 NusB antitermination factor n=1 Tax=alpha proteo... 106 2e-22 UniRef50_A8I0J8 Antitermination protein n=1 Tax=Azorhizobium cau... 106 2e-22 UniRef50_C8PI00 Transcription antitermination factor NusB n=1 Ta... 106 2e-22 UniRef50_Q18B61 N utilization substance protein B homolog n=6 Ta... 106 2e-22 UniRef50_Q1MPZ7 TRNA and rRNA cytosine-C5-methylases n=1 Tax=Law... 106 3e-22 UniRef50_C0W1L8 Putative uncharacterized protein n=1 Tax=Actinom... 105 4e-22 UniRef50_UPI0000E0DBE4 Putative Sun protein n=1 Tax=Rhodobactera... 105 4e-22 UniRef50_C0QI57 RsmB n=1 Tax=Desulfobacterium autotrophicum HRM2... 105 4e-22 UniRef50_D1BMJ1 NusB antitermination factor n=3 Tax=Veillonella ... 105 5e-22 UniRef50_B1N082 Transcription termination factor n=3 Tax=Leucono... 105 5e-22 UniRef50_D0LCQ6 Transcription antitermination factor NusB n=3 Ta... 105 5e-22 UniRef50_C2BWJ7 Possible transcription antitermination protein N... 105 6e-22 UniRef50_Q0BWV2 Putative ribosomal RNA small subunit methyltrans... 105 6e-22 UniRef50_C7H6X0 Transcription antitermination factor NusB n=3 Ta... 105 7e-22 UniRef50_C8WHT5 NusB/RsmB/TIM44 n=1 Tax=Eggerthella lenta DSM 22... 104 8e-22 UniRef50_A7BC97 Putative uncharacterized protein n=1 Tax=Actinom... 104 8e-22 UniRef50_Q4FPZ1 N utilization substance protein B homolog n=19 T... 104 9e-22 UniRef50_Q2RN41 tRNA and rRNA cytosine-C5-methylase n=1 Tax=Rhod... 104 9e-22 UniRef50_C5R7W5 Transcription antitermination protein NusB n=1 T... 104 1e-21 UniRef50_Q8NQ33 N utilization substance protein B homolog n=5 Ta... 103 2e-21 UniRef50_C6XIX5 NusB antitermination factor n=1 Tax=Hirschia bal... 103 2e-21 UniRef50_B6BUY9 Transcription antitermination factor NusB n=1 Ta... 103 2e-21 UniRef50_A1TWM9 Sun protein n=3 Tax=Marinobacter RepID=A1TWM9_MARAV 103 2e-21 UniRef50_Q21DD2 Fmu (Sun) n=13 Tax=Rhizobiales RepID=Q21DD2_RHOPB 103 2e-21 UniRef50_UPI00016C434C transcription antitermination protein Nus... 103 2e-21 UniRef50_A0Z2Z6 Sun protein n=2 Tax=unclassified Gammaproteobact... 103 2e-21 UniRef50_C4G0T0 Putative uncharacterized protein n=1 Tax=Abiotro... 102 3e-21 UniRef50_A7IBA4 Sun protein n=6 Tax=Rhizobiales RepID=A7IBA4_XANP2 102 3e-21 UniRef50_A8PKU4 Ribosomal RNA small subunit methyltransferase B ... 102 4e-21 UniRef50_B7S425 Predicted protein n=1 Tax=Phaeodactylum tricornu... 102 4e-21 UniRef50_C6JJK8 N utilization substance protein B n=2 Tax=Fusoba... 102 5e-21 UniRef50_C2BPE4 Transcription antitermination protein NusB n=2 T... 102 5e-21 UniRef50_D0BJY7 Transcription antitermination factor NusB n=2 Ta... 102 5e-21 UniRef50_D1B5H9 NusB antitermination factor n=1 Tax=Thermanaerov... 101 6e-21 UniRef50_C4GAK6 Putative uncharacterized protein n=1 Tax=Shuttle... 101 6e-21 UniRef50_B6JAF7 SUN protein n=6 Tax=Alphaproteobacteria RepID=B6... 101 7e-21 UniRef50_D1KD39 Ribosomal RNA small subunit methyltransferase B ... 101 7e-21 UniRef50_A3MAA2 16S rRNA m5C967 SAM-dependent methyltransferase ... 101 7e-21 UniRef50_UPI0001BC6038 transcription antitermination protein Nus... 101 8e-21 UniRef50_C0QT45 N utilization substance protein B homolog n=2 Ta... 101 8e-21 UniRef50_UPI0001BC2C20 NusB antitermination factor n=1 Tax=Brevi... 101 9e-21 UniRef50_Q044I1 Transcription termination factor n=18 Tax=Lactob... 100 1e-20 UniRef50_A1AVP0 Sun protein n=1 Tax=Candidatus Ruthia magnifica ... 100 1e-20 UniRef50_C1SH03 Transcription antitermination factor NusB n=1 Ta... 100 2e-20 UniRef50_C6I119 Transcription antitermination factor (NusB) n=1 ... 100 2e-20 UniRef50_C2KZE7 Putative uncharacterized protein n=1 Tax=Oribact... 100 2e-20 UniRef50_D1R8R5 Putative uncharacterized protein n=1 Tax=Parachl... 100 2e-20 UniRef50_C6W6R3 NusB antitermination factor n=1 Tax=Dyadobacter ... 100 2e-20 UniRef50_A4CML6 NusB family protein n=2 Tax=Flavobacteria RepID=... 100 2e-20 UniRef50_C0WL14 Transcription antitermination protein NusB n=1 T... 100 3e-20 UniRef50_B8J1H7 NusB/RsmB/TIM44 n=1 Tax=Desulfovibrio desulfuric... 100 3e-20 UniRef50_B7CB38 Putative uncharacterized protein n=1 Tax=Eubacte... 100 3e-20 UniRef50_C7MNL0 tRNA/rRNA cytosine-C5-methylase n=1 Tax=Cryptoba... 100 3e-20 UniRef50_UPI0001BC65B2 16S rRNA m(5)C 967 methyltransferase n=2 ... 100 3e-20 UniRef50_C3WZH3 Transcription antitermination protein NusB n=4 T... 100 3e-20 UniRef50_A3VQU7 TRNA and rRNA cytosine-C5-methylase-like protein... 99 3e-20 UniRef50_Q88B41 Ribosomal RNA small subunit methyltransferase B ... 99 3e-20 UniRef50_C7RHU9 NusB antitermination factor n=2 Tax=Anaerococcus... 99 4e-20 UniRef50_A1B2A9 NusB antitermination factor n=43 Tax=Rhodobacter... 99 4e-20 UniRef50_UPI0001C31BDA sun protein n=1 Tax=Conexibacter woesei D... 99 5e-20 UniRef50_A6UED5 Fmu (Sun) domain protein n=14 Tax=Rhizobiales Re... 99 5e-20 UniRef50_Q1N3W2 16S rRNA m5C967 methyltransferase, S-adenosyl-L-... 99 6e-20 UniRef50_Q607V0 N utilization substance protein B homolog n=1 Ta... 98 7e-20 UniRef50_A5WI31 Fmu (Sun) domain protein n=3 Tax=Psychrobacter R... 98 9e-20 UniRef50_B9ZKR1 Sun protein n=2 Tax=Chromatiales RepID=B9ZKR1_9GAMM 97 1e-19 UniRef50_Q14PA1 Putative ribosomal rna small subunit methyltrans... 97 1e-19 UniRef50_C0N5F9 Ribosomal RNA small subunit methyltransferase B ... 97 1e-19 UniRef50_Q2S463 Ribosomal RNA small subunit methyltransferase B ... 97 1e-19 UniRef50_C8NZ84 rRNA methylase n=1 Tax=Erysipelothrix rhusiopath... 97 2e-19 UniRef50_C7PI91 NusB antitermination factor n=1 Tax=Chitinophaga... 97 2e-19 UniRef50_C9L054 NusB family protein n=34 Tax=Bacteroidales RepID... 97 2e-19 UniRef50_A6LN58 NusB/RsmB/TIM44 n=2 Tax=Thermosipho RepID=A6LN58... 97 2e-19 UniRef50_UPI0001699525 transcription antitermination protein Nus... 97 2e-19 UniRef50_Q9CHN4 N utilization substance protein B homolog n=1 Ta... 97 2e-19 UniRef50_D1R943 Putative uncharacterized protein n=1 Tax=Parachl... 97 2e-19 UniRef50_B5YIL4 Sun protein n=1 Tax=Thermodesulfovibrio yellowst... 97 2e-19 UniRef50_D2QU07 NusB antitermination factor n=1 Tax=Spirosoma li... 97 2e-19 UniRef50_B8J9P4 NusB/RsmB/TIM44 n=4 Tax=Anaeromyxobacter RepID=B... 97 2e-19 UniRef50_A8RBL8 Putative uncharacterized protein n=2 Tax=unclass... 97 2e-19 UniRef50_C5CGV6 NusB/RsmB/TIM44 n=1 Tax=Kosmotoga olearia TBF 19... 96 3e-19 UniRef50_Q603G1 Sun protein n=1 Tax=Methylococcus capsulatus Rep... 96 4e-19 UniRef50_Q0VTE3 tRNA and rRNA cytosine-C5-methylase, putative n=... 96 4e-19 UniRef50_C2D8V4 Putative uncharacterized protein n=1 Tax=Atopobi... 96 4e-19 UniRef50_B6GC41 Putative uncharacterized protein n=2 Tax=Collins... 96 4e-19 UniRef50_B0JGZ3 N utilization substance protein B homolog n=12 T... 96 4e-19 UniRef50_Q030T8 Transcription termination factor n=3 Tax=Lactoco... 95 4e-19 UniRef50_C9UP93 Fmu domain-containing protein n=1 Tax=Brucella a... 95 4e-19 UniRef50_C7M0X2 NusB antitermination factor n=1 Tax=Acidimicrobi... 95 7e-19 UniRef50_P74395 N utilization substance protein B homolog n=16 T... 94 1e-18 UniRef50_B8DMM9 NusB/RsmB/TIM44 n=1 Tax=Desulfovibrio vulgaris s... 94 1e-18 UniRef50_Q0C0J1 N utilization substance protein B homolog n=1 Ta... 94 1e-18 UniRef50_A1ZKP0 NusB antitermination factor n=1 Tax=Microscilla ... 94 2e-18 UniRef50_C2CFC5 Possible transcription antitermination protein N... 94 2e-18 UniRef50_B9GFY0 Predicted protein n=6 Tax=Spermatophyta RepID=B9... 94 2e-18 UniRef50_Q04EK8 Transcription termination factor n=2 Tax=Oenococ... 94 2e-18 UniRef50_A9BJY1 NusB antitermination factor n=1 Tax=Petrotoga mo... 94 2e-18 UniRef50_A0LDW0 Sun protein n=2 Tax=cellular organisms RepID=A0L... 94 2e-18 UniRef50_Q0F395 Sun protein n=1 Tax=Mariprofundus ferrooxydans P... 94 2e-18 UniRef50_B6FZ39 Putative uncharacterized protein n=1 Tax=Clostri... 94 2e-18 UniRef50_C5X355 Putative uncharacterized protein Sb02g027560 n=1... 94 2e-18 UniRef50_A5CEP9 N utilization substance protein B n=2 Tax=Orient... 93 2e-18 UniRef50_C2MAV6 NusB family protein n=1 Tax=Porphyromonas uenoni... 93 3e-18 UniRef50_C2KPZ2 Possible transcription antitermination protein N... 93 3e-18 UniRef50_Q2G467 N utilization substance protein B homolog n=7 Ta... 93 3e-18 UniRef50_B3E3P1 Sun protein n=4 Tax=Desulfuromonadales RepID=B3E... 93 3e-18 UniRef50_B2UP28 Sun protein n=1 Tax=Akkermansia muciniphila ATCC... 93 3e-18 UniRef50_C0BGT7 Transcription antitermination factor NusB n=1 Ta... 93 3e-18 UniRef50_C5PR17 N utilization substance protein n=2 Tax=Sphingob... 93 4e-18 UniRef50_Q0AKI8 Fmu (Sun) domain protein n=1 Tax=Maricaulis mari... 92 4e-18 UniRef50_C2HH21 Possible rRNA SAM-dependent methyltransferase Rm... 92 4e-18 UniRef50_A1WZH2 Sun protein n=1 Tax=Halorhodospira halophila SL1... 92 5e-18 UniRef50_C3J8Y9 NusB family protein n=2 Tax=Bacteria RepID=C3J8Y... 92 5e-18 UniRef50_B9QVY4 Ribosomal RNA small subunit methyltransferase B ... 92 5e-18 UniRef50_C0XST3 Transcription antitermination protein NusB n=1 T... 92 6e-18 UniRef50_C3RL93 Predicted protein n=4 Tax=Bacteria RepID=C3RL93_... 92 6e-18 UniRef50_B4U865 NusB antitermination factor n=1 Tax=Hydrogenobac... 92 7e-18 UniRef50_B1A1G7 Putative N utilization substance protein (Fragme... 91 9e-18 UniRef50_C7N543 tRNA/rRNA cytosine-C5-methylase n=2 Tax=Slackia ... 91 9e-18 UniRef50_Q88RR3 Ribosomal RNA small subunit methyltransferase B ... 91 9e-18 UniRef50_A3HY11 Putative N utilization substance protein n=1 Tax... 91 1e-17 UniRef50_B3PGY5 Ribosomal RNA small subunit methyltransferase B ... 91 1e-17 UniRef50_A8YVX2 Transcription termination n=9 Tax=Lactobacillus ... 91 1e-17 UniRef50_B9JUI9 Sun protein n=44 Tax=Rhizobiales RepID=B9JUI9_AGRVS 91 1e-17 UniRef50_Q87AR1 Ribosomal RNA small subunit methyltransferase B ... 91 1e-17 UniRef50_Q7NKZ0 N utilization substance protein B homolog n=1 Ta... 91 1e-17 UniRef50_D1RHX8 Ribosomal RNA small subunit methyltransferase B ... 90 1e-17 UniRef50_C9Q172 N utilization substance protein NusB n=9 Tax=Pre... 90 1e-17 UniRef50_C7NCF2 NusB antitermination factor n=4 Tax=Fusobacteria... 90 2e-17 UniRef50_C8PZ41 Ribosomal RNA small subunit methyltransferase B ... 90 2e-17 UniRef50_A6EGS9 Putative N utilization substance protein n=1 Tax... 90 2e-17 UniRef50_A9IZD6 SUN-family protein n=5 Tax=Bartonella RepID=A9IZ... 90 2e-17 UniRef50_B9Y7F7 Putative uncharacterized protein n=1 Tax=Holdema... 90 2e-17 UniRef50_D0J9N1 Antitermination protein NusB n=2 Tax=Blattabacte... 90 2e-17 UniRef50_Q2VBT2 NusB n=1 Tax=uncultured Bacteroidetes bacterium ... 90 2e-17 UniRef50_A0M4D8 Antitermination protein NusB n=8 Tax=Bacteroidet... 90 2e-17 UniRef50_C1A8F7 Antitermination protein NusB n=1 Tax=Gemmatimona... 90 3e-17 UniRef50_C8W755 NusB/RsmB/TIM44 n=1 Tax=Atopobium parvulum DSM 2... 90 3e-17 UniRef50_Q8RII1 N utilization substance protein B homolog n=7 Ta... 89 3e-17 UniRef50_A3UKE9 RRNA methyltransferase RsmB n=1 Tax=Oceanicaulis... 89 3e-17 UniRef50_D2MQI4 Putative ribosomal RNA small subunit methyltrans... 89 4e-17 UniRef50_C8NU84 N utilization substance protein B family protein... 89 4e-17 UniRef50_C2M6F3 NusB family protein n=1 Tax=Capnocytophaga gingi... 89 4e-17 UniRef50_Q651X9 Os09g0477900 protein n=3 Tax=Magnoliophyta RepID... 89 4e-17 UniRef50_C9RK88 Fmu (Sun) domain protein n=1 Tax=Fibrobacter suc... 89 4e-17 UniRef50_B2UNF0 NusB antitermination factor n=1 Tax=Akkermansia ... 89 4e-17 UniRef50_Q0BRA0 16S rRNA m(5)C 967 methyltransferase n=12 Tax=Ac... 89 5e-17 UniRef50_Q9LK54 Similarity to SUN and FMU proteins n=3 Tax=Embry... 88 8e-17 UniRef50_Q0G330 Putative uncharacterized protein n=5 Tax=Rhizobi... 88 9e-17 UniRef50_C9M539 Transcription antitermination factor NusB n=1 Ta... 88 1e-16 UniRef50_Q6MAQ2 Putative transcription termination factor, nusB ... 87 1e-16 UniRef50_C6WZZ6 Transcription termination protein NusB n=2 Tax=F... 87 1e-16 UniRef50_Q2JHC7 N utilization substance protein B homolog n=3 Ta... 87 2e-16 UniRef50_Q7MW39 NusB family protein n=2 Tax=Porphyromonas gingiv... 87 2e-16 UniRef50_Q5ZSC6 rRNA methyltransferase (SUN protein) n=5 Tax=Gam... 87 2e-16 UniRef50_Q2GKH0 N utilization substance protein B n=5 Tax=Anapla... 87 2e-16 UniRef50_D2MQ58 Transcription antitermination factor NusB n=1 Ta... 87 2e-16 UniRef50_B2VAC4 NusB antitermination factor n=2 Tax=Sulfurihydro... 87 2e-16 UniRef50_C7MCJ5 Transcription antitermination factor NusB n=1 Ta... 86 3e-16 UniRef50_C1DXN6 Transcription antitermination factor NusB n=1 Ta... 86 3e-16 UniRef50_A6GX17 N utilization substance protein B homolog (NusBp... 86 3e-16 UniRef50_Q5SK01 Sun protein (RNA methyltransferase) n=4 Tax=Ther... 86 3e-16 UniRef50_O27960 Fmu and fmv protein n=1 Tax=Archaeoglobus fulgid... 86 3e-16 UniRef50_Q0FEH7 Ribosomal RNA small subunit methyltransferase B,... 86 4e-16 UniRef50_Q9Z6S0 N utilization substance protein B homolog n=5 Ta... 86 4e-16 UniRef50_C6P2V1 Sun protein n=1 Tax=Sideroxydans lithotrophicus ... 86 4e-16 UniRef50_D1Y3T9 Transcription antitermination factor NusB n=1 Ta... 85 5e-16 UniRef50_Q1IY91 rRNA methyltransferase, sun family protein n=3 T... 85 5e-16 UniRef50_B4WQD6 Transcription antitermination factor NusB, putat... 85 8e-16 UniRef50_B9CK37 NusB/NOL1/NOP2/sun family protein n=1 Tax=Atopob... 85 9e-16 UniRef50_Q2ST59 N utilization substance protein B (NusB), putati... 84 1e-15 UniRef50_UPI0001C31981 NusB antitermination factor n=1 Tax=Conex... 84 1e-15 UniRef50_B0MX54 Putative uncharacterized protein n=1 Tax=Alistip... 84 1e-15 UniRef50_B8BTD6 Predicted protein n=1 Tax=Thalassiosira pseudona... 84 1e-15 UniRef50_UPI000185C78C antitermination protein NusB n=1 Tax=Capn... 84 1e-15 UniRef50_Q3KKK7 N utilization substance protein B homolog n=9 Ta... 84 1e-15 UniRef50_D1AKD9 Fmu (Sun) domain protein n=4 Tax=Fusobacteriacea... 84 1e-15 UniRef50_Q5GT93 Transcription termination factor, NusB n=7 Tax=W... 84 2e-15 UniRef50_D1AVZ4 NusB antitermination factor n=1 Tax=Streptobacil... 84 2e-15 UniRef50_P45679 Ribosomal RNA small subunit methyltransferase B ... 84 2e-15 UniRef50_D0WMZ9 B-like utilization substance protein n=1 Tax=Act... 84 2e-15 UniRef50_Q8DKS0 N utilization substance protein B homolog n=1 Ta... 84 2e-15 UniRef50_B7J3C2 Sun protein n=2 Tax=Acidithiobacillus ferrooxida... 84 2e-15 UniRef50_Q8TGY0 tRNA/rRNA cytosine-C5-methylase n=1 Tax=Methanop... 83 2e-15 UniRef50_C5V0U6 Sun protein n=1 Tax=Gallionella ferruginea ES-2 ... 83 3e-15 UniRef50_A1KRE7 SUN-family protein n=32 Tax=Neisseriaceae RepID=... 83 3e-15 UniRef50_C8NZM3 N utilization substance protein B family protein... 82 4e-15 UniRef50_C6XT54 NusB/RsmB/TIM44 n=1 Tax=Pedobacter heparinus DSM... 82 6e-15 UniRef50_C1SIP0 tRNA/rRNA cytosine-C5-methylase n=1 Tax=Denitrov... 82 7e-15 UniRef50_A6G719 Putative uncharacterized protein n=1 Tax=Plesioc... 82 7e-15 UniRef50_Q26ET0 Putative antitermination protein NusB n=1 Tax=Fl... 82 7e-15 UniRef50_C6XFI6 Fmu (Sun) domain protein n=1 Tax=Candidatus Libe... 82 8e-15 UniRef50_Q11SB2 Antitermination factor n=1 Tax=Cytophaga hutchin... 82 8e-15 UniRef50_C5A6U4 SAM-dependent tRNA/rRNA cytosine-C5 methylase n=... 81 1e-14 UniRef50_C6QJ47 Sun protein n=1 Tax=Hyphomicrobium denitrificans... 81 1e-14 UniRef50_A4BP82 Fmu, rRNA SAM-dependent methyltransferase n=1 Ta... 80 1e-14 UniRef50_D0KVS1 Sun protein n=1 Tax=Halothiobacillus neapolitanu... 80 2e-14 UniRef50_B2SFT3 tRNA and rRNA cytosine-C5-methylase, sun protein... 80 2e-14 UniRef50_D2UG22 Putative trna and rrna cytosine-c5-methylase pro... 80 2e-14 UniRef50_Q16CE2 RRNA methyltransferase RsmB n=15 Tax=Rhodobacter... 80 3e-14 UniRef50_D0RNV5 N utilization substance protein B n=1 Tax=alpha ... 79 3e-14 UniRef50_C9LEM4 NusB family protein n=1 Tax=Prevotella tannerae ... 79 3e-14 UniRef50_A6FYF2 Ribosomal RNA small subunit methyltransferase B ... 79 4e-14 UniRef50_UPI0000E87C3C sun; rRNA methylase n=1 Tax=Methylophilal... 79 5e-14 UniRef50_B6BVG1 Sun protein n=1 Tax=beta proteobacterium KB13 Re... 78 7e-14 UniRef50_B9YCQ6 Putative uncharacterized protein n=1 Tax=Holdema... 78 1e-13 UniRef50_Q7V9D9 Antitermination protein NusB n=18 Tax=cellular o... 78 1e-13 UniRef50_A4E6P2 Putative uncharacterized protein n=1 Tax=Collins... 78 1e-13 UniRef50_C7RGU2 Fmu (Sun) domain protein n=4 Tax=Anaerococcus Re... 77 1e-13 UniRef50_C1TRU2 tRNA/rRNA cytosine-C5-methylase n=1 Tax=Dethiosu... 77 1e-13 UniRef50_Q40J48 N utilization substance protein B, putative n=4 ... 77 1e-13 UniRef50_D1N3Y9 Fmu (Sun) domain protein n=1 Tax=Victivallis vad... 77 1e-13 UniRef50_C9M5B8 Putative Sun protein n=1 Tax=Jonquetella anthrop... 77 2e-13 UniRef50_Q7V3R0 Antitermination protein NusB n=7 Tax=Prochloroco... 77 2e-13 UniRef50_A5V7N4 Fmu (Sun) domain protein n=7 Tax=Sphingomonadale... 77 2e-13 UniRef50_B6WUQ6 Putative uncharacterized protein n=1 Tax=Desulfo... 77 2e-13 UniRef50_C5SHX2 Sun protein n=1 Tax=Asticcacaulis excentricus CB... 75 5e-13 UniRef50_Q8TGZ4 tRNA/rRNA cytosine-C5-methylase n=1 Tax=Methanop... 75 6e-13 UniRef50_B1ZZX2 Fmu (Sun) domain protein n=2 Tax=Opitutaceae Rep... 75 7e-13 UniRef50_D1Y2M1 Fmu n=1 Tax=Pyramidobacter piscolens W5455 RepID... 74 1e-12 UniRef50_C7I4U3 Sun protein n=1 Tax=Thiomonas intermedia K12 Rep... 74 2e-12 UniRef50_B5Y8M6 Putative uncharacterized protein n=1 Tax=Coproth... 72 4e-12 UniRef50_Q601I2 Putative uncharacterized protein n=5 Tax=Mycopla... 72 4e-12 UniRef50_Q46I53 Antitermination protein NusB n=2 Tax=Prochloroco... 72 5e-12 UniRef50_A9RW70 Predicted protein (Fragment) n=1 Tax=Physcomitre... 72 5e-12 UniRef50_B6YR78 Transcription termination factor NusB n=1 Tax=Ca... 72 5e-12 UniRef50_Q2GCQ0 Putative N utilization substance protein B n=2 T... 72 6e-12 UniRef50_D2RGI9 Fmu (Sun) domain protein n=2 Tax=Archaeoglobacea... 72 7e-12 UniRef50_Q2YC21 Sun protein n=7 Tax=Betaproteobacteria RepID=Q2Y... 72 7e-12 UniRef50_Q7Y092 Os03g0656900 protein n=9 Tax=Poaceae RepID=Q7Y09... 72 7e-12 UniRef50_Q9V089 Sun/NOL1/NOP nucleolar protein n=3 Tax=Pyrococcu... 71 9e-12 UniRef50_B6W6K6 Putative uncharacterized protein n=1 Tax=Anaeroc... 71 1e-11 UniRef50_Q14MH2 Hypothetical transcription factor involved in an... 70 3e-11 UniRef50_Q8TGY2 tRNA/rRNA cytosine-C5-methylase n=1 Tax=Methanop... 70 3e-11 UniRef50_D1J7Q8 N utilization substance protein B homolog(Protei... 69 4e-11 UniRef50_Q4FLU0 Antitermination protein NusB n=3 Tax=Candidatus ... 69 5e-11 UniRef50_B1AIT8 Transcription antitermination factor NusB n=15 T... 68 9e-11 UniRef50_Q4A684 Putative uncharacterized protein n=1 Tax=Mycopla... 68 9e-11 UniRef50_A5IYQ6 Transcription termination factor (NusB) n=2 Tax=... 67 1e-10 UniRef50_B9GXX5 Predicted protein n=2 Tax=Spermatophyta RepID=B9... 67 2e-10 UniRef50_D0GJC1 Putative ribosomal RNA small subunit methyltrans... 66 3e-10 UniRef50_D1H5W4 Whole genome shotgun sequence of line PN40024, s... 66 3e-10 UniRef50_C5J681 Putative uncharacterized protein MCJ_002820 n=1 ... 66 3e-10 UniRef50_A1B5L0 Fmu (Sun) domain protein n=30 Tax=Alphaproteobac... 66 4e-10 UniRef50_UPI00003837A7 COG0144: tRNA and rRNA cytosine-C5-methyl... 65 1e-09 UniRef50_B3PM53 Transcription termination factor n=1 Tax=Mycopla... 64 1e-09 UniRef50_A9NFG4 Transcription antitermination factor n=1 Tax=Ach... 63 2e-09 UniRef50_A6DSU1 tRNA and rRNA cytosine-C5-methylase n=1 Tax=Lent... 63 2e-09 UniRef50_Q8EWP3 Transcription termination factor N-utilization s... 63 3e-09 UniRef50_D1B789 Fmu (Sun) domain protein n=1 Tax=Thermanaerovibr... 63 3e-09 UniRef50_C0ADS6 Fmu (Sun) domain protein (Fragment) n=1 Tax=Opit... 62 4e-09 UniRef50_B4RCX9 rRNA methyltransferase RsmB n=8 Tax=Alphaproteob... 62 7e-09 UniRef50_Q3YSG7 Putative uncharacterized protein n=1 Tax=Ehrlich... 62 8e-09 UniRef50_A4T0M4 Sun protein n=2 Tax=Polynucleobacter necessarius... 59 3e-08 UniRef50_C0B8Y2 Putative uncharacterized protein n=1 Tax=Coproco... 57 2e-07 UniRef50_Q98R41 Putative uncharacterized protein MYPU_1690 n=1 T... 56 3e-07 UniRef50_C8WDB8 Fmu (Sun) domain protein n=3 Tax=Zymomonas mobil... 56 3e-07 UniRef50_UPI000169938E Sun protein n=1 Tax=Endoriftia persephone... 56 4e-07 UniRef50_Q5P4P8 tRNA and rRNA cytosine-C5-methylases sun n=8 Tax... 55 7e-07 UniRef50_Q2NJE9 N utilization substance protein B n=4 Tax=Candid... 55 8e-07 UniRef50_Q7NAX6 Putative uncharacterized protein n=1 Tax=Mycopla... 53 4e-06 UniRef50_A5B766 Putative uncharacterized protein n=1 Tax=Vitis v... 52 7e-06 UniRef50_Q2T2A8 Sun protein n=76 Tax=Proteobacteria RepID=Q2T2A8... 50 3e-05 UniRef50_C6NTF2 Ribosomal RNA small subunit methyltransferase B ... 45 6e-04 Sequences not found previously or not previously below threshold: UniRef50_C5CKF6 Sun protein n=5 Tax=Betaproteobacteria RepID=C5C... 43 0.002 UniRef50_B6IQ69 tRNA and rRNA cytosine-C5-methylase, putative n=... 43 0.004 UniRef50_D0KW91 Fmu (Sun) domain protein n=1 Tax=Halothiobacillu... 42 0.004 UniRef50_D0ME27 Fmu (Sun) domain protein n=1 Tax=Rhodothermus ma... 42 0.007 UniRef50_A1WK57 Sun protein n=17 Tax=cellular organisms RepID=A1... 42 0.008 UniRef50_C5KW57 Putative uncharacterized protein (Fragment) n=3 ... 41 0.010 UniRef50_UPI000196CC25 hypothetical protein CATMIT_02482 n=1 Tax... 41 0.012 UniRef50_Q8TH02 tRNA/rRNA cytosine-C5-methylase n=1 Tax=Methanop... 41 0.015 UniRef50_Q2RXU7 tRNA/rRNA cytosine-C5-methylase n=8 Tax=Alphapro... 40 0.031 >UniRef50_A4VHT5 N utilization substance protein B homolog n=23 Tax=Gammaproteobacteria RepID=NUSB_PSEU5 Length = 161 Score = 158 bits (401), Expect = 5e-38, Method: Composition-based stats. Identities = 71/137 (51%), Positives = 89/137 (64%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 K A RR AR A+QALY W ++ + ++E QF + D VD YF ELL GVA Sbjct: 19 KIATRRVARSLAMQALYQWHMAGQSLNEIEAQFRVDNDFSGVDGAYFHELLNGVARKKTE 78 Query: 62 LDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 +D + P L R L+EL VE A+LR++ YEL +R DVPY+V INE IELAK +GA D HK Sbjct: 79 VDQAIAPNLDRPLDELDPVELAILRLSTYELMQRIDVPYRVVINEGIELAKVYGATDGHK 138 Query: 122 FVNGVLDKAAPVIRPNK 138 FVNGVLDK AP +R + Sbjct: 139 FVNGVLDKLAPSLRSAE 155 >UniRef50_A5D1B7 tRNA and rRNA cytosine-C5-methylases n=6 Tax=Clostridia RepID=A5D1B7_PELTS Length = 456 Score = 152 bits (385), Expect = 3e-36, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 57/129 (44%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 ARE A++ + + + Q L + +D + EL G + LD +++ Sbjct: 9 ARELALKVVNAVEEEGAYANLALNQVLEKHRPGKLDRAFATELAYGTLRSLNTLDWVLEQ 68 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 ++ + L + +LR+ +Y+L VP NE ELA+ +G + KFVNGVL Sbjct: 69 FIKQPLSSQSRTVLNILRLGVYQLMFMDRVPPSAVCNEGAELARKYGHAGTVKFVNGVLR 128 Query: 129 KAAPVIRPN 137 + + Sbjct: 129 NISRRLNEI 137 >UniRef50_A7VUU4 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VUU4_9CLOT Length = 446 Score = 152 bits (385), Expect = 3e-36, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 54/128 (42%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLM 66 + AR A++AL + + V LA + D + L GV LD + Sbjct: 5 KNARLTALKALLRVEEGKGYSNLVLDHGLAASGLDGRDAAFASALFYGVLERRITLDYQI 64 Query: 67 KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGV 126 Y L ++ + +LR+ Y+L VP A+NE+++L ++ + + FVNG+ Sbjct: 65 SRYSKMPLSQMAAPVREILRLGFYQLLYMDKVPQSAAVNESVKLTRAVKKDKASGFVNGI 124 Query: 127 LDKAAPVI 134 L Sbjct: 125 LRSFIRDG 132 >UniRef50_D1BMC4 Sun protein n=3 Tax=Veillonella RepID=D1BMC4_VEIPT Length = 451 Score = 152 bits (385), Expect = 3e-36, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 1/136 (0%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 K ++ R AV+AL + ++L + + D+D +F EL+ GV Y Sbjct: 5 KTNQQQNIRLLAVKALSEINRNGAYANIKLQEYLQKYHLSDLDRRFFTELVYGVIRRKNY 64 Query: 62 LDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 LD ++ + R +++L + +LR+ +Y++ VP A+NE+++LAK Sbjct: 65 LDAIIVFFAKRPIKKLSSMVLEILRLGIYQIIYMDKVPESAAVNESVKLAKKL-TRGLSG 123 Query: 122 FVNGVLDKAAPVIRPN 137 FVN VL Sbjct: 124 FVNAVLRSVLRESDSI 139 >UniRef50_C9R7W0 NusB antitermination factor n=1 Tax=Ammonifex degensii KC4 RepID=C9R7W0_AMMDK Length = 155 Score = 152 bits (385), Expect = 4e-36, Method: Composition-based stats. Identities = 48/132 (36%), Positives = 75/132 (56%), Gaps = 1/132 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +RRRARE A+ L+ + + + LAE + + + L+ G +D Sbjct: 1 MSRRRAREAALMVLFQVDVGGAVPEEALERTLAEWRLGNASREFATSLVLGTLAYRPQID 60 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 +++ R LE + +V++ V+R+ALYEL R D+P VAINEA+ELAK +G E+S +F Sbjct: 61 RVIEELSQRWRLERMNRVDRNVMRLALYELLFRQDIPPAVAINEAVELAKRYGGEESPRF 120 Query: 123 VNGVLDKAAPVI 134 VNG+L K A + Sbjct: 121 VNGILGKVAENL 132 >UniRef50_A3DCX8 Sun protein n=5 Tax=Clostridium RepID=A3DCX8_CLOTH Length = 455 Score = 150 bits (380), Expect = 1e-35, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 61/129 (47%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 + RE A++ LY ++L Q+ + +D + +++ G +D L++ Sbjct: 9 KVRETALKILYDINEKGAYSNISLNKYLNGQEFESIDRAFITDIVYGTLKWQYTIDYLIE 68 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 + S ++++ +LR+ +Y+L +P+ A NE+++LA +G S K+VN VL Sbjct: 69 KFSSVKIKKISPWIFNILRMGIYQLIYTDKIPFFAACNESVKLAAKYGHAASSKYVNAVL 128 Query: 128 DKAAPVIRP 136 A Sbjct: 129 RNIARNKEN 137 >UniRef50_A7ZIG9 N utilization substance protein B homolog n=118 Tax=Gammaproteobacteria RepID=NUSB_ECO24 Length = 139 Score = 150 bits (379), Expect = 1e-35, Method: Composition-based stats. Identities = 139/139 (100%), Positives = 139/139 (100%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA Sbjct: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH Sbjct: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 Query: 121 KFVNGVLDKAAPVIRPNKK 139 KFVNGVLDKAAPVIRPNKK Sbjct: 121 KFVNGVLDKAAPVIRPNKK 139 >UniRef50_Q1IFL9 N utilization substance protein B homolog n=12 Tax=Proteobacteria RepID=NUSB_PSEE4 Length = 166 Score = 149 bits (378), Expect = 2e-35, Method: Composition-based stats. Identities = 71/137 (51%), Positives = 91/137 (66%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 K A RR AR+ A QALY W ++++ + +VE QF + D DVD YFRE+L GV Sbjct: 24 KSAKRREARKLATQALYQWHMAKHSLNEVEAQFRVDNDFSDVDGAYFREILHGVPAKKVE 83 Query: 62 LDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 +D +KP L LEEL VE +VLR++ +E R+DVPY+V INE +ELAK FGA D HK Sbjct: 84 IDEALKPCLDTPLEELDPVELSVLRLSAWEFMMRADVPYRVVINEGVELAKVFGATDGHK 143 Query: 122 FVNGVLDKAAPVIRPNK 138 FVNGVLDK AP +R + Sbjct: 144 FVNGVLDKLAPRLREAE 160 >UniRef50_Q48DC2 N utilization substance protein B homolog n=51 Tax=Gammaproteobacteria RepID=NUSB_PSE14 Length = 165 Score = 149 bits (378), Expect = 2e-35, Method: Composition-based stats. Identities = 73/137 (53%), Positives = 93/137 (67%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 K A RR AR+ A QALY W ++ + + ++E QF + D +VD YFRELL GVATN Sbjct: 23 KSAKRREARQMATQALYQWHMAGHALNEIEAQFRVDNDFSNVDGAYFRELLHGVATNKTE 82 Query: 62 LDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 +D + P L +EEL VE AVLR++ +EL KR DVPY+V INE IELAK +G+ D HK Sbjct: 83 IDTALSPCLDLTIEELDPVELAVLRLSTFELLKRIDVPYRVVINEGIELAKVYGSTDGHK 142 Query: 122 FVNGVLDKAAPVIRPNK 138 FVNGVLDK AP +R + Sbjct: 143 FVNGVLDKLAPRLREVE 159 >UniRef50_C5BS84 N utilization substance protein B homolog n=2 Tax=Gammaproteobacteria RepID=NUSB_TERTT Length = 147 Score = 149 bits (377), Expect = 3e-35, Method: Composition-based stats. Identities = 72/141 (51%), Positives = 90/141 (63%), Gaps = 3/141 (2%) Query: 1 MKP--AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATN 58 MK A R RAR A+QA+Y WQ++ N + +E +F + D+ VD YF EL GVA + Sbjct: 1 MKVTAATRSRARHFAMQAIYQWQMNGNPLHVIEAEFHTDNDMSKVDTEYFHELFHGVAAD 60 Query: 59 TAYLDGLMKPYLSR-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 + LD P+L LE+L V A+LR A +EL R DVPYKV INEA+ LAK FGAE Sbjct: 61 KSALDACFLPHLKSLPLEKLDPVTLALLRQATFELKNRVDVPYKVVINEAVNLAKKFGAE 120 Query: 118 DSHKFVNGVLDKAAPVIRPNK 138 DSHKFVNGVLDK A +R + Sbjct: 121 DSHKFVNGVLDKVAADLRALE 141 >UniRef50_A8FD39 rRNA SAM-dependent methyltransferase RmsB n=3 Tax=Bacillaceae RepID=A8FD39_BACP2 Length = 447 Score = 148 bits (376), Expect = 4e-35, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 1/131 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 + RE A+ AL + +Q + + ++D+ D D EL+ G N LD Sbjct: 1 MKKSNVREVALDALIKLEQNQAYSNLLLQSVMKDKDLADQDKPLLTELVYGTLQNKLALD 60 Query: 64 GLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 ++ P++ + +++ +LR++LY++ +P + AI+EA+EL K G + V Sbjct: 61 YMLAPFVKKP-QKVAPWVMQLLRMSLYQMVYLEKIPDRAAIHEAVELTKKRGHKGISSLV 119 Query: 124 NGVLDKAAPVI 134 NGVL Sbjct: 120 NGVLRSVQREG 130 >UniRef50_B3QZ49 Sun protein n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QZ49_CHLT3 Length = 443 Score = 147 bits (371), Expect = 1e-34, Method: Composition-based stats. Identities = 35/129 (27%), Positives = 61/129 (47%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 +ARE AVQAL +++ F + ++ VD + +++ G +D ++K Sbjct: 3 KAREIAVQALREVEVNHAKSDTALNHFFSITALEPVDRAFTMQIVYGTLREKMKIDHVIK 62 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 + +++ K +LRI Y+L S VP A+NE++ELAK + VNGVL Sbjct: 63 QFYRHDYDKMDIDVKNILRIGAYQLLFLSKVPRWAAVNESVELAKKLKGQFLGNLVNGVL 122 Query: 128 DKAAPVIRP 136 + + Sbjct: 123 RNISNNLES 131 >UniRef50_A3DDP0 N utilization substance protein B homolog n=5 Tax=Clostridium RepID=NUSB_CLOTH Length = 145 Score = 146 bits (369), Expect = 3e-34, Method: Composition-based stats. Identities = 43/130 (33%), Positives = 77/130 (59%), Gaps = 1/130 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 RR +RE A++ +Y ++ ++ + L + D+ + D Y +++ GV N +D Sbjct: 1 MGRRASREIAMKLIYQLEIQKDSREEQINNTLEQYDLNENDREYILDVVKGVFKNQEEID 60 Query: 64 GLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 G ++ + L + +V+ A+LR+A+YE+ R D+P+ VAINEA+ELAK++ E+S F Sbjct: 61 GTIEKFSKGWKLSRISKVDLAILRLAIYEMCHRDDIPFTVAINEAVELAKNYSGEESGSF 120 Query: 123 VNGVLDKAAP 132 +NG+L K Sbjct: 121 INGILGKVVK 130 >UniRef50_Q2RK22 Sun protein n=3 Tax=Clostridia RepID=Q2RK22_MOOTA Length = 457 Score = 145 bits (368), Expect = 3e-34, Method: Composition-based stats. Identities = 33/128 (25%), Positives = 50/128 (39%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 ARE A+Q +Y + L + + EL LD + Sbjct: 10 AREAALQVIYRVTEEGAYAGLALDEVLKSAGLDGRERALATELAYSAIKAWGTLDWALGL 69 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 +L + LE+L + VLR+ +L +P + AI E +ELAK +G + VNGVL Sbjct: 70 FLRQPLEKLPPWIRCVLRLGATQLLYVPRIPPRAAIYETVELAKKYGHRGTTGLVNGVLR 129 Query: 129 KAAPVIRP 136 Sbjct: 130 HLDRQKDA 137 >UniRef50_A5D319 N utilization substance protein B homolog n=3 Tax=Peptococcaceae RepID=NUSB_PELTS Length = 144 Score = 145 bits (366), Expect = 5e-34, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 68/134 (50%), Gaps = 1/134 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +RR+ARE A+Q L+ + D + + R L+ G N A +D Sbjct: 1 MSRRQARERALQILFQVDVGGADPGEAFRLMDEGFGELKKYQEFARLLVGGTLENLAAID 60 Query: 64 GLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ + + V++ ++R+ALYE+ D+PY V++NEA+EL K++G E+S +F Sbjct: 61 RVIAGVSKDWNINRMANVDRNIIRMALYEIFFCEDIPYSVSVNEAVELGKTYGGEESGRF 120 Query: 123 VNGVLDKAAPVIRP 136 +NG+L + Sbjct: 121 INGILGRIVESPEE 134 >UniRef50_D2RNU3 Sun protein n=3 Tax=Veillonellaceae RepID=D2RNU3_ACIFE Length = 446 Score = 144 bits (365), Expect = 6e-34, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 1/135 (0%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK A+ RE A+ L L Q L + +D EL+ G Sbjct: 1 MKGTAK-NPREAALLILEQIFLRGAYANLALDQGLRGATLSPLDRKLTTELVYGTVKTMG 59 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD + ++R L +L + +LR+ Y+L +P A NE+++LAK + E + Sbjct: 60 TLDWYLSRVVNRPLRKLDPLVLVILRLGAYQLLYLDRIPASAACNESVKLAKKWVHEGAG 119 Query: 121 KFVNGVLDKAAPVIR 135 K VNG L + A Sbjct: 120 KLVNGALRQLARTRD 134 >UniRef50_Q0AD60 N utilization substance protein B homolog n=3 Tax=Nitrosomonas RepID=NUSB_NITEC Length = 167 Score = 144 bits (365), Expect = 7e-34, Method: Composition-based stats. Identities = 54/136 (39%), Positives = 79/136 (58%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 RR +RE A+Q +Y W+L+ + +++ Q D YF +LL GV ++ L Sbjct: 20 KNRRRLSRELALQGIYQWRLAGGNAQEIDLQLQQVNFYSKADGSYFSDLLQGVLEHSRDL 79 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + ++ YL R L EL VE ++L I YE+ ++P + INEAIELAKS+G D HK+ Sbjct: 80 EAQIQAYLDRQLAELSPVECSILLIGTYEMVHHPEIPCRAIINEAIELAKSYGGTDGHKY 139 Query: 123 VNGVLDKAAPVIRPNK 138 VNGVLDK A +R + Sbjct: 140 VNGVLDKLAAQLRAVE 155 >UniRef50_C6D4F5 Sun protein n=87 Tax=Bacilli RepID=C6D4F5_PAESJ Length = 491 Score = 144 bits (365), Expect = 8e-34, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 55/135 (40%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 +PA R RE A+ L + + L E ++ D EL+ G Sbjct: 33 RPARVRTPRELALDTLVKVAETGAYSNLQLNRVLQEAQLQRADAALVTELVYGTIQRQLT 92 Query: 62 LDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 LD + + ++ L +L +LR++ Y+L +P A+NEA+ +AK G + Sbjct: 93 LDHWLGKFAAKGLRKLEPWVHQLLRMSAYQLLYLDRIPAHAAVNEAVTIAKRRGHQGISG 152 Query: 122 FVNGVLDKAAPVIRP 136 VNG+L Sbjct: 153 MVNGILRSIDRNRAE 167 >UniRef50_B6IZ82 N utilization substance protein B homolog n=6 Tax=Coxiella burnetii RepID=NUSB_COXB2 Length = 138 Score = 143 bits (363), Expect = 1e-33, Method: Composition-based stats. Identities = 60/137 (43%), Positives = 82/137 (59%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 M R AR A+QALY W + + QF+ E D+ D DV YF+E++ G + A Sbjct: 1 MINKTRHNARRYALQALYQWFFCETKPDALISQFMEEHDLSDTDVAYFKEVVTGTIQHVA 60 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D LM +L R + L VE +VLR+++YEL R +VPYKV I+EA+EL K FGAE H Sbjct: 61 IIDELMTAHLDRKISALNPVELSVLRLSIYELLHRKEVPYKVVIDEALELVKEFGAEAGH 120 Query: 121 KFVNGVLDKAAPVIRPN 137 K+VN +LD + IR Sbjct: 121 KYVNAILDVLSSEIRKG 137 >UniRef50_A1W9I4 N utilization substance protein B homolog n=6 Tax=Comamonadaceae RepID=NUSB_ACISJ Length = 177 Score = 143 bits (363), Expect = 1e-33, Method: Composition-based stats. Identities = 55/136 (40%), Positives = 75/136 (55%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 + R RARE A+QALY + ND ++ D ++ LL G T Y+ Sbjct: 32 KSGRSRAREFALQALYQHLVGGNDATAIDVFTRDLSGFHKADAAHYDALLHGCITTAQYM 91 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 D L+ P L R + E+ +E AV+ I +YE DVP++V INE IELAK FG D HK+ Sbjct: 92 DELIAPQLDRKMSEISPIEHAVMWIGVYEFQHCQDVPWRVVINECIELAKEFGGTDGHKY 151 Query: 123 VNGVLDKAAPVIRPNK 138 VNGVL+ AP +R + Sbjct: 152 VNGVLNGLAPQLRATE 167 >UniRef50_C4ZEV6 Sun protein n=4 Tax=Clostridiales RepID=C4ZEV6_EUBR3 Length = 469 Score = 143 bits (362), Expect = 2e-33, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 51/128 (39%), Gaps = 1/128 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNTAYLDGLMKP 68 RE A++ L V L + + D + L+ G LD ++ Sbjct: 42 RELALEMLIEINERGAFSHIVLRSVLDKYQYLSKQDRAFMTRLVDGTIEYMLQLDYIIDS 101 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 + + ++ + +LR+++Y++ VP NEA++LAK FVNGVL Sbjct: 102 FSKTKVRKMKPFIRNLLRMSVYQIKYMDAVPDSAVCNEAVKLAKRHKFAQLSGFVNGVLR 161 Query: 129 KAAPVIRP 136 A I Sbjct: 162 NIARNIDS 169 >UniRef50_B0MGA0 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0MGA0_9FIRM Length = 448 Score = 143 bits (361), Expect = 2e-33, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 52/132 (39%), Gaps = 1/132 (0%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDV-DVLYFRELLAGVATNTAYLDGL 65 + RE A+ L + + L + + D +F L G +D + Sbjct: 2 QNPRELALDVLMKIDKKEELSHIAIGETLEKYQFSEKKDRAFFTRLCQGTLERRLTIDYV 61 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 + Y + ++ + +++LR+ ++ +P A NE ++LAK G FVNG Sbjct: 62 IDLYSKTKVRKMKPLVRSLLRMGACQILFMDHIPDSAACNECVKLAKKRGFSKLSGFVNG 121 Query: 126 VLDKAAPVIRPN 137 VL + + Sbjct: 122 VLRTISRQKQEI 133 >UniRef50_A0Q113 Sun protein n=35 Tax=Clostridium RepID=A0Q113_CLONN Length = 443 Score = 143 bits (361), Expect = 2e-33, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 56/129 (43%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 +AR+ V L V Q L + + D D E++ G +D ++ Sbjct: 3 KARKICVDILEVVFNKNAYSNIVLRQTLNKNKIDDKDKGLITEIVYGTIKYKYTIDTILN 62 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 +L + ++ L +LRI +Y++ +P A+NEA+E+AK + + K VNGVL Sbjct: 63 NFLKKGIKSLDSYVLNILRITVYQIKFLDKIPNFAAVNEAVEIAKKEKSVGASKLVNGVL 122 Query: 128 DKAAPVIRP 136 + Sbjct: 123 RNYLRNLDK 131 >UniRef50_B3EF03 Sun protein n=11 Tax=Chlorobiaceae RepID=B3EF03_CHLL2 Length = 451 Score = 143 bits (361), Expect = 2e-33, Method: Composition-based stats. Identities = 34/125 (27%), Positives = 56/125 (44%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 +RE A++ L + + + ++ L+ + D EL+ GV LD + Sbjct: 9 SRELALKVLQNIESGEKKSGTALHEQLSHTSLNQNDRALATELVNGVLRRRLTLDTFIGR 68 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 Y E+ V K +LRI Y+L +P+ A+NE++ LA+ + E K VN VL Sbjct: 69 YYHHRYEKAAPVLKNILRIGAYQLIYLDRIPHWAAVNESVSLARRYKGEHMAKLVNAVLR 128 Query: 129 KAAPV 133 P Sbjct: 129 NITPE 133 >UniRef50_B0A9Y2 Putative uncharacterized protein n=2 Tax=Clostridium RepID=B0A9Y2_9CLOT Length = 441 Score = 143 bits (361), Expect = 2e-33, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 1/132 (0%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 ++R A + L+ + +QN + + ++ + D + E++ GV N YLD ++ Sbjct: 2 KSRNLAYKVLFDIEKNQNYSNMAINKHFKDCNLDNRDRGFATEIIYGVVENKIYLDYIID 61 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 +L K +LR+ +Y++ V A+NE + L K S FVN VL Sbjct: 62 KLSKIKSNKLNLKVKILLRMGIYQILFLDSVSDYAAVNETVNLTKKL-DNRSAGFVNAVL 120 Query: 128 DKAAPVIRPNKK 139 + Sbjct: 121 RNVIRQKEDIGE 132 >UniRef50_A7C6S2 Transcription antitermination protein NusB n=1 Tax=Beggiatoa sp. PS RepID=A7C6S2_9GAMM Length = 164 Score = 142 bits (360), Expect = 3e-33, Method: Composition-based stats. Identities = 67/141 (47%), Positives = 88/141 (62%), Gaps = 12/141 (8%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFL------------AEQDVKDVDVLYFRE 50 P AR ARE +QALY WQL+ + +E QFL E D++ D+ YF++ Sbjct: 10 PKARHVARERVLQALYQWQLTGQNTQLIESQFLDESTLSKEEDESEEPDMQKADIPYFKQ 69 Query: 51 LLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIEL 110 LL + T+ LD L P+L R + +L VE A+LRI YEL+ D+P+KV INEA+EL Sbjct: 70 LLHSIPEKTSDLDKLFAPFLDRKITQLDPVELAILRIGSYELTHCQDIPFKVVINEAVEL 129 Query: 111 AKSFGAEDSHKFVNGVLDKAA 131 AK FGAE SHK++NGVLDK A Sbjct: 130 AKQFGAEQSHKYINGVLDKLA 150 >UniRef50_B3DWQ3 N utilization substance protein B homolog n=1 Tax=Methylacidiphilum infernorum V4 RepID=NUSB_METI4 Length = 143 Score = 142 bits (360), Expect = 3e-33, Method: Composition-based stats. Identities = 40/131 (30%), Positives = 70/131 (53%), Gaps = 2/131 (1%) Query: 5 ARRRARECAVQALYSWQLS-QNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +RR+ RE VQ LY W+++ + ++ F + D + L +A + ++ Sbjct: 3 SRRKIRELIVQFLYQWEMNKGVGLDNMLLDFWDFSPLDQKDKEAVEQWLKEIAEHKEAIE 62 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + Y+ L+ L V+K +L + +YE+ R D+P V+INE++E+AK + E+S KF Sbjct: 63 EKINSYVKNWSLDRLAPVDKCILILGIYEILYRKDIPPAVSINESVEIAKKYSTEESGKF 122 Query: 123 VNGVLDKAAPV 133 VNG+LD Sbjct: 123 VNGILDSVLKD 133 >UniRef50_Q2YD50 N utilization substance protein B homolog n=4 Tax=Betaproteobacteria RepID=NUSB_NITMU Length = 158 Score = 142 bits (359), Expect = 3e-33, Method: Composition-based stats. Identities = 53/137 (38%), Positives = 77/137 (56%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 + + RR ARE A+Q LY W ++ +E Q ++ D YF LL GV Sbjct: 17 RKSRRRLARELALQGLYQWCVAGGSAGTIEAQLRDTEEFPKTDEEYFSRLLHGVLMQAPE 76 Query: 62 LDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 L+ ++P L R EL VE ++L + YEL + ++PY+ INEA+ELAK++G HK Sbjct: 77 LEKEIQPCLDRPFNELSPVEISILLLGAYELERHPEIPYRAVINEAVELAKAYGGTHGHK 136 Query: 122 FVNGVLDKAAPVIRPNK 138 +VNGVLDK A +R + Sbjct: 137 YVNGVLDKLAVKLRAAE 153 >UniRef50_Q0K7T8 N utilization substance protein B homolog n=70 Tax=Betaproteobacteria RepID=NUSB_RALEH Length = 172 Score = 142 bits (358), Expect = 4e-33, Method: Composition-based stats. Identities = 60/136 (44%), Positives = 81/136 (59%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 +ARRR+RE A+Q LY W L++NDI ++ Q D +F LL G A L Sbjct: 32 KSARRRSRELALQGLYQWLLNRNDIGAIQAHLHDAQGFNKADREHFDALLNGAVREEARL 91 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 +P+L R +EEL VE+A L + YEL D+PYKV INEA+EL K+FG + +K+ Sbjct: 92 TAAFEPFLDRKVEELSPVERAALLVGSYELVHCLDIPYKVVINEAVELTKTFGGVEGYKY 151 Query: 123 VNGVLDKAAPVIRPNK 138 VNGVLDK A +R + Sbjct: 152 VNGVLDKLAAQVRAAE 167 >UniRef50_Q31FT2 N utilization substance protein B homolog n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=NUSB_THICR Length = 161 Score = 142 bits (358), Expect = 4e-33, Method: Composition-based stats. Identities = 60/134 (44%), Positives = 91/134 (67%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R + R A+QALY WQ++ ++ D+ QF E + D DV F+E++ VA + A LD L Sbjct: 24 RTQTRRVALQALYQWQVNHSETVDIIKQFSEEGRLVDTDVALFQEIVNEVANHAADLDEL 83 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 P+L R + + VEK ++R+ ++EL + ++PY+V INE++ELAK FGAEDSHK++NG Sbjct: 84 YAPFLDRAVARIDPVEKNIMRMGVFELQNKLEIPYRVVINESVELAKRFGAEDSHKYING 143 Query: 126 VLDKAAPVIRPNKK 139 +LDKAA +R +K Sbjct: 144 ILDKAAEGLRSLEK 157 >UniRef50_B0TEI6 N utilization substance protein B homolog n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=NUSB_HELMI Length = 206 Score = 141 bits (357), Expect = 5e-33, Method: Composition-based stats. Identities = 46/134 (34%), Positives = 74/134 (55%), Gaps = 1/134 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +RR+ RE A+Q L+ + + + A E + + + REL+ G N +D Sbjct: 1 MSRRQGRETALQTLFMADVGRMEPAYALQYASEEFGISEAAAAFARELVEGAVANRETID 60 Query: 64 GLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 G ++ LE + V++ +LR+A++E+ R D+P AINEAIELAK + E+S KF Sbjct: 61 GNIRRLAKEWNLERMPHVDRNLLRVAIFEMLFREDIPLNAAINEAIELAKIYANEESAKF 120 Query: 123 VNGVLDKAAPVIRP 136 VNG+L + A +R Sbjct: 121 VNGILGQLARELRE 134 >UniRef50_C7HWX1 NusB antitermination factor n=1 Tax=Thiomonas intermedia K12 RepID=C7HWX1_THIIN Length = 202 Score = 141 bits (357), Expect = 7e-33, Method: Composition-based stats. Identities = 53/136 (38%), Positives = 79/136 (58%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 +ARR++RE A Q +Y W L+ +D +E +D +F+ LL G L Sbjct: 8 KSARRKSRELAFQGIYEWLLAGSDTGAIEAFLHERYPTIKLDDDHFQSLLHGALAEAGPL 67 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 D L++P++ R EL VE A+L + +EL + DVPY+V INEA+EL K +G D +K+ Sbjct: 68 DALIQPHIDRQTSELSPVEHALLLMGAFELQRHLDVPYRVVINEAVELGKVYGGTDGYKY 127 Query: 123 VNGVLDKAAPVIRPNK 138 VNGVLD+ A +R + Sbjct: 128 VNGVLDRIAAQLRKTE 143 >UniRef50_Q493G9 N utilization substance protein B homolog n=3 Tax=Enterobacteriaceae RepID=NUSB_BLOPB Length = 144 Score = 141 bits (356), Expect = 7e-33, Method: Composition-based stats. Identities = 81/134 (60%), Positives = 104/134 (77%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK +RRRAREC +QALYSWQ+S+ND+ ++E + EQD++D ++ YF EL GV + Sbjct: 1 MKAISRRRARECTLQALYSWQVSKNDVKEIERYVVTEQDIQDCNISYFHELYIGVISCAE 60 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD LM P+LSR LE+LG +E +VLRIAL+EL+K +D+PYKVAINEAIEL K FGAE SH Sbjct: 61 ELDKLMIPHLSRNLEKLGYIEHSVLRIALFELTKCNDIPYKVAINEAIELVKIFGAEKSH 120 Query: 121 KFVNGVLDKAAPVI 134 KF+NGVLDK A + Sbjct: 121 KFINGVLDKIANQL 134 >UniRef50_A8FF16 N utilization substance protein B homolog n=28 Tax=Bacillales RepID=NUSB_BACP2 Length = 131 Score = 141 bits (356), Expect = 7e-33, Method: Composition-based stats. Identities = 48/133 (36%), Positives = 76/133 (57%), Gaps = 5/133 (3%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 RR ARE A+Q L+ +S D + L EQ+ +F EL+ GV LD Sbjct: 1 MKRRTAREKALQTLFQIDVSNIDPKEAITHALDEQESDP----FFEELVFGVLEQKDKLD 56 Query: 64 GLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ +L + L+ + V++A+LR+++YE+ + D+P V++NEAIELAK FG + + KF Sbjct: 57 DMISQHLVNWKLDRIANVDRAILRLSVYEMVYQEDIPVSVSMNEAIELAKLFGDDKAPKF 116 Query: 123 VNGVLDKAAPVIR 135 VNGVL ++ Sbjct: 117 VNGVLSNIKNDLK 129 >UniRef50_A8MH88 Sun protein n=7 Tax=Clostridiaceae RepID=A8MH88_ALKOO Length = 445 Score = 141 bits (356), Expect = 8e-33, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 1/131 (0%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 RE A++ LY +++ + L + +D EL+ GV N Y+D ++ Sbjct: 2 NPREGALKVLYEINVNEAFSNIALNKELNNESYNLLDRNLLTELVYGVLENQIYIDHVLS 61 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 + + L+++ +LR+ +Y+L VP A+NE + L+K + + + F+NGVL Sbjct: 62 QFSNFQLDKMNPYTLNLLRLGIYQLLFLDRVPSFAAVNETVNLSKKYC-KKTTGFINGVL 120 Query: 128 DKAAPVIRPNK 138 K Sbjct: 121 RNVQRNRNNIK 131 >UniRef50_UPI0001C36EDB sun protein n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C36EDB Length = 443 Score = 141 bits (356), Expect = 8e-33, Method: Composition-based stats. Identities = 35/127 (27%), Positives = 53/127 (41%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R AV+ L S + L D+ D + L GV LD ++ Sbjct: 5 RYTAVKLLDKTFRSGSYSNIQLDAGLKNSDLSPQDKRFCTALYYGVIERKITLDHILTGL 64 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 SR L +L + +LR +Y+L +VP A+NE+++LAK FG + VN VL Sbjct: 65 SSRPLSKLDSIIITILRCGIYQLLYMENVPDNAAVNESVKLAKKFGKTSASGMVNAVLRN 124 Query: 130 AAPVIRP 136 + Sbjct: 125 FIRKGKK 131 >UniRef50_C8W0Z5 NusB antitermination factor n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W0Z5_DESAS Length = 156 Score = 141 bits (356), Expect = 9e-33, Method: Composition-based stats. Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 1/134 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +RR R+ A+Q L+ ++ D + +A+ + + R+L+ G + +D Sbjct: 1 MSRREGRQIAMQILFQIEVGGIDPEEAFKNTVADSTCPVPIMEFARQLVFGTLGHLKEID 60 Query: 64 GLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ L+ + V+K ++R+ALYE+ ++P V+ NEAIELAK FG E+S KF Sbjct: 61 RVISEISKGWRLDRIANVDKTLIRMALYEIFYEDNIPLNVSANEAIELAKIFGGEESGKF 120 Query: 123 VNGVLDKAAPVIRP 136 VNG++ K Sbjct: 121 VNGIIGKVVQKPDE 134 >UniRef50_C0EFK3 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EFK3_9CLOT Length = 441 Score = 140 bits (355), Expect = 1e-32, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 54/131 (41%), Gaps = 1/131 (0%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLM 66 R AR+ A+ AL L+ + D + +L GV LD ++ Sbjct: 4 RTARDLALSALLKMDKQGAYSNLAFDGMLSSSSLSPRDRDFAAKLFYGVLETKITLDYII 63 Query: 67 KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGV 126 Y + E++ + +LR+ LY++ D+ A+NE++ L K G + + FVN + Sbjct: 64 ASYATMKPEKISSDVRNILRLGLYQIKYL-DLEDFAAVNESVNLVKLRGKKSASGFVNAI 122 Query: 127 LDKAAPVIRPN 137 L + Sbjct: 123 LRAFLRDGKNI 133 >UniRef50_A6NUS8 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NUS8_9BACE Length = 447 Score = 140 bits (355), Expect = 1e-32, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 1/134 (0%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 P+ + ARE A+ AL + + + L E + D L GV N L Sbjct: 2 PSTDQTARETALLALSACERQGAWSDGFLKKTLREAGLDSRDAALATRLCFGVLQNRLLL 61 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG-AEDSHK 121 D + + + E++ + LR+ +Y+++ + +P+ A+NE++EL K + Sbjct: 62 DFYIGKFSTTRPEKMEIKVRNALRLGVYQMAFMTKIPHNAAVNESVELTKKHCKNPRAAG 121 Query: 122 FVNGVLDKAAPVIR 135 VNGVL + I Sbjct: 122 MVNGVLRNVSRNID 135 >UniRef50_A9BVN7 N utilization substance protein B homolog n=7 Tax=Comamonadaceae RepID=NUSB_DELAS Length = 212 Score = 140 bits (354), Expect = 1e-32, Method: Composition-based stats. Identities = 51/136 (37%), Positives = 74/136 (54%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 + R RARE A+QALY + ND+ ++ D +++ LL G + L Sbjct: 32 KSNRSRAREFALQALYQHLVGGNDVEAIDRFTRDLSGFHKADSVHYDALLRGCINSQVDL 91 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 D L+ P L R + E+ +E A + I +YE DVP++V +NE IELAK FG D HK+ Sbjct: 92 DALIAPKLDRTMAEISPIEHASMWIGVYEFQHCPDVPWRVVLNECIELAKEFGGTDGHKY 151 Query: 123 VNGVLDKAAPVIRPNK 138 VN VL+ AP +R + Sbjct: 152 VNAVLNGLAPTLRAAE 167 >UniRef50_D0L1W4 NusB antitermination factor n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L1W4_HALNC Length = 196 Score = 139 bits (352), Expect = 2e-32, Method: Composition-based stats. Identities = 59/140 (42%), Positives = 89/140 (63%), Gaps = 3/140 (2%) Query: 2 KPAARRR---ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATN 58 KP+ ++R ARE AVQALY L+ + ++ QF+ + + VD+ FR ++ GV+ N Sbjct: 54 KPSPKKRWRWARERAVQALYQQILNHTPVDLLDAQFMEDAFMLKVDLELFRRIVRGVSAN 113 Query: 59 TAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 LD P L R L E+ +E+A+LR+ +EL ++P VAINEA+E+AK +GA + Sbjct: 114 EESLDEAYSPLLDRPLAEIDPIEQAILRLGAFELIHTPEIPRAVAINEAVEMAKLYGATE 173 Query: 119 SHKFVNGVLDKAAPVIRPNK 138 SHK++NGVLDK A +R N+ Sbjct: 174 SHKYINGVLDKLADRVRLNE 193 >UniRef50_B9L0C6 Transcription antitermination factor NusB n=2 Tax=Thermomicrobia (class) RepID=B9L0C6_THERP Length = 168 Score = 139 bits (352), Expect = 2e-32, Method: Composition-based stats. Identities = 45/134 (33%), Positives = 74/134 (55%), Gaps = 1/134 (0%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 RR+AR A+Q LY ++ + + +V + ++ + Y L+ GV + +D + Sbjct: 34 RRQARILALQILYEVDVANHSLEEVLERHRSQASIAQPVRRYAERLVTGVWADRERIDRM 93 Query: 66 MKPYLSR-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + +++L V++ +LRIA+YEL DVP K AINEA+E+AK +G E S +FVN Sbjct: 94 IAEAAPAFPVDQLPPVDRNILRIAIYELLHEPDVPLKAAINEAVEIAKQYGGESSSRFVN 153 Query: 125 GVLDKAAPVIRPNK 138 GVL A + + Sbjct: 154 GVLGTIAANLASSG 167 >UniRef50_D2LH50 NusB antitermination factor n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LH50_RHOVA Length = 185 Score = 139 bits (351), Expect = 3e-32, Method: Composition-based stats. Identities = 49/141 (34%), Positives = 78/141 (55%), Gaps = 7/141 (4%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAE-----QDVKDVDVLYFRELLAGVATNT 59 R RAR AVQALY +++Q D++ V +FL + D +FR+++ G+A Sbjct: 20 PRTRARLAAVQALYQMEMTQRDLSLVLQEFLGRRFETVEIYAGADRSFFRDIVEGIARGQ 79 Query: 60 AYLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 A +D + +L+ L + + +A+LR +YEL+ R+DVP + INE +E+AK F Sbjct: 80 AKIDLEIAAHLASGWKLSRIDSILRAILRSGVYELTDRNDVPARAVINEYVEIAKDFFGG 139 Query: 118 DSHKFVNGVLDKAAPVIRPNK 138 + VNGVLD+ A R + Sbjct: 140 EEPGVVNGVLDRVARAKRSRE 160 >UniRef50_Q21F20 N utilization substance protein B homolog n=5 Tax=Gammaproteobacteria RepID=NUSB_SACD2 Length = 150 Score = 138 bits (350), Expect = 4e-32, Method: Composition-based stats. Identities = 74/141 (52%), Positives = 94/141 (66%), Gaps = 3/141 (2%) Query: 1 MKPAA--RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATN 58 MK +A R RAR A+QALY W++S N + +E +F + D+ VDV YF E+L GVA Sbjct: 1 MKVSAAARGRARHFAMQALYQWEMSGNALHVIEAEFHTDNDMSKVDVEYFHEILHGVAAI 60 Query: 59 TAYLDGLMKPYLSR-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 + LD KP+L+ L+E+ V AVLR A YE KR DVPYKV INEA+ LAK FGA Sbjct: 61 KSTLDETFKPFLTGLRLDEIDPVSLAVLRQACYEFEKRVDVPYKVVINEAVNLAKKFGAA 120 Query: 118 DSHKFVNGVLDKAAPVIRPNK 138 DSHKF+NGVLDK A +R ++ Sbjct: 121 DSHKFINGVLDKVALRVRKDE 141 >UniRef50_UPI0001C335A0 ribosomal RNA small subunit methyltransferase RsmB n=3 Tax=Cyanobacteria RepID=UPI0001C335A0 Length = 453 Score = 138 bits (350), Expect = 4e-32, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 57/137 (41%), Gaps = 3/137 (2%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK + AR+ ++ L + + I ++ D EL+ G+ Sbjct: 1 MKVSN---ARQLVLKILREIDKNNSFINISLDSAFKHNELSRQDRGLCTELVYGIIRCQR 57 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD L+ ++ ++ V + +L I LY+L VP A+N +++LAK+ Sbjct: 58 TLDSLIDQLGNKKSQKQSPVLRRILHIGLYQLLYLDHVPLSAAVNTSVDLAKNNNLNVLS 117 Query: 121 KFVNGVLDKAAPVIRPN 137 K VN +L + V + Sbjct: 118 KVVNAILREYIRVKKKE 134 >UniRef50_C0WD86 SUN protein n=1 Tax=Acidaminococcus sp. D21 RepID=C0WD86_9FIRM Length = 445 Score = 138 bits (350), Expect = 4e-32, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 53/128 (41%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLM 66 + RE A+ L + L + +D EL+ G T LD + Sbjct: 5 QNPRELALLVLDEIYERGAYANLALNKALRGNGLSSLDRKLCTELVYGTVKTTGTLDWYL 64 Query: 67 KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGV 126 ++R ++ + +LR+ Y++ +P A+NE LA+ + E+S K VNGV Sbjct: 65 CRVINRPFRKMAPRLRTILRMGAYQILYLERIPDSAAVNECANLARYYVNENSVKLVNGV 124 Query: 127 LDKAAPVI 134 L + + Sbjct: 125 LRQLSRTK 132 >UniRef50_Q1PUX1 Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PUX1_9BACT Length = 422 Score = 138 bits (349), Expect = 4e-32, Method: Composition-based stats. Identities = 48/140 (34%), Positives = 73/140 (52%), Gaps = 3/140 (2%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 M+ R ARE A++ALY L + +F + K + L+ G ++ Sbjct: 1 MR--NRTIARELAIKALYQLDLLGDKAETEIDEFCRQNAEKPDIYKFALLLVTGCRSHVK 58 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D + L + ++K +LR+ +YEL R D+P KV+INEAIELAK FG +DS Sbjct: 59 EIDERISLSAENWDLHRMAVIDKNILRLGVYELLYRDDIPPKVSINEAIELAKKFGDKDS 118 Query: 120 HKFVNGVLDKAAPVIRPNKK 139 FVNG+LDK ++ K+ Sbjct: 119 GMFVNGILDKVYNWLKNGKQ 138 >UniRef50_P94464 Ribosomal RNA small subunit methyltransferase B n=24 Tax=Bacillales RepID=RSMB_BACSU Length = 447 Score = 138 bits (349), Expect = 5e-32, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 65/131 (49%), Gaps = 1/131 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 + R+ A++AL + +Q + + ++ D + EL+ G N LD Sbjct: 1 MKKTSVRDIALEALIKLEQNQAYSNLLLKSVIKSNELSDQNRGLLTELVYGTLQNKIALD 60 Query: 64 GLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 ++KP++++ +++ +LR++LY++ +P + AI+EA+E+AK G + FV Sbjct: 61 YMLKPFINKP-QKVKPWVIQLLRLSLYQMEYLEKIPDRAAIHEAVEIAKIRGHKGIASFV 119 Query: 124 NGVLDKAAPVI 134 NGVL Sbjct: 120 NGVLRSIQREG 130 >UniRef50_B1HQE5 Ribosomal RNA small subunit methyltransferase B n=5 Tax=Bacillaceae RepID=B1HQE5_LYSSC Length = 453 Score = 138 bits (348), Expect = 6e-32, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 3/127 (2%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 R+ A+ L + +Q + + + ++ D EL G + LD ++ Sbjct: 12 NVRDAALSILLAVDKNQAYSNLLLNETIKRHKIEAKDRALLTELTYGTLQHKMTLDYYLE 71 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 P++ + + +LRI+LY++ + +P A+NEA+E+AK G VNG+L Sbjct: 72 PFIRGS---IDHWVRWLLRISLYQMQYLTRIPAHAAVNEAVEIAKRRGHRGIASTVNGIL 128 Query: 128 DKAAPVI 134 Sbjct: 129 RSVLRQG 135 >UniRef50_A0LEK0 Sun protein n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LEK0_SYNFM Length = 449 Score = 138 bits (348), Expect = 6e-32, Method: Composition-based stats. Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 1/127 (0%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFL-AEQDVKDVDVLYFRELLAGVATNTAYLDGLM 66 AR A Q L + + L + +++ D EL+ GV LD + Sbjct: 3 NARVLAFQILLHMDRDASHPDRLIRGMLGRHERLEERDRALLTELVYGVLRWQGRLDWHI 62 Query: 67 KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGV 126 E++ + +LR+ALY++ +P A+NEA+ +AK+ KFVNGV Sbjct: 63 DQLSRTRPEKIDPAVRILLRLALYQILMLDRIPDHAAVNEAVNMAKTTQPAYLVKFVNGV 122 Query: 127 LDKAAPV 133 L +A Sbjct: 123 LREALRR 129 >UniRef50_Q67NA9 N utilization substance protein B homolog n=2 Tax=Clostridiales RepID=NUSB_SYMTH Length = 153 Score = 138 bits (348), Expect = 6e-32, Method: Composition-based stats. Identities = 45/138 (32%), Positives = 72/138 (52%), Gaps = 9/138 (6%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQ--------DVKDVDVLYFRELLAGV 55 +RR+ARE A+QAL+ ++ D Q L + +++ + R L+ G Sbjct: 1 MSRRKARELALQALFQMDIAGTDPDTAVAQALTRETEPDWAPDRLEEESAEFARRLVRGA 60 Query: 56 ATNTAYLDGLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 + D L+ Y +E + V++A+LR+A+YE+ DVP VA+ EA+ELAK+F Sbjct: 61 WQHREESDRLIAQYARGWRVERMAAVDRAILRMAVYEIVHSEDVPDSVAVAEAVELAKTF 120 Query: 115 GAEDSHKFVNGVLDKAAP 132 DS +FVNG+L Sbjct: 121 STADSSRFVNGILGSVIR 138 >UniRef50_A8RWU3 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=A8RWU3_9CLOT Length = 455 Score = 138 bits (348), Expect = 6e-32, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 49/128 (38%), Gaps = 1/128 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNTAYLDGLMKP 68 RE + L + V Q L + + D + + G +D ++ Sbjct: 12 REIVLDILTEVLEQGAFVHLVLNQALQKYQYLGKADRSFITRAVEGTLEYLIQIDEVINR 71 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 Y + ++ +++LR+++Y++ VP NEA+++A FVNGVL Sbjct: 72 YSKTKINKMKPFIRSLLRMSVYQILYMDRVPDSAVCNEAVKMAVKRHFSGLKGFVNGVLR 131 Query: 129 KAAPVIRP 136 + Sbjct: 132 TISREKEN 139 >UniRef50_B8FJ78 N utilization substance protein B homolog n=2 Tax=Desulfobacteraceae RepID=NUSB_DESAA Length = 143 Score = 138 bits (348), Expect = 7e-32, Method: Composition-based stats. Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 1/137 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 RRRARE A+Q+L+ + + F +F EL GV N +D Sbjct: 2 GKRRRARELALQSLFYVDSTSAPPLEALDLFCQNFPPPKDLAQFFYELAKGVINNQDEID 61 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 L++ + + L + V+ ++RIA YE DVP +V+INEAI++ K FG +S F Sbjct: 62 RLIEQHSNNWKLYRMSAVDLNLMRIAAYEFLFCPDVPRRVSINEAIDIGKRFGTAESGAF 121 Query: 123 VNGVLDKAAPVIRPNKK 139 +NG+LD + +K Sbjct: 122 INGILDSIHLHLGKEEK 138 >UniRef50_Q3JCY0 N utilization substance protein B homolog n=2 Tax=Nitrosococcus oceani RepID=NUSB_NITOC Length = 148 Score = 138 bits (348), Expect = 7e-32, Method: Composition-based stats. Identities = 60/136 (44%), Positives = 87/136 (63%), Gaps = 1/136 (0%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 R +AR A+Q LY WQL D+ ++ +F+ + D++ +D YF+ELL GV L Sbjct: 2 SNRRSKARTAALQGLYQWQLMGQDVDKIDIEFIVQ-DIRGIDHAYFQELLRGVPQRQGEL 60 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 D + P+L R + E+ VE A+LRI +EL R ++PY+V +NEAIELAK FGAE H++ Sbjct: 61 DECLGPFLDRPINEVDPVECAILRIGAFELLCRPEIPYRVVLNEAIELAKRFGAEHGHRY 120 Query: 123 VNGVLDKAAPVIRPNK 138 VNG+LDK A +R + Sbjct: 121 VNGILDKVAQKVRATE 136 >UniRef50_B1YIQ1 Sun protein n=2 Tax=Exiguobacterium RepID=B1YIQ1_EXIS2 Length = 446 Score = 138 bits (348), Expect = 7e-32, Method: Composition-based stats. Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 1/130 (0%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 R+ AV L +Q L ++ + DV + EL+ G + LD +++ Sbjct: 2 NVRDAAVTTLLKIGQGGAFSTISVHQMLEKRAISKADVGLYTELVYGTLSRELTLDYILE 61 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 P+L++ ++L + +LR+++Y+L +P INEA+E+AK+ G K VNGVL Sbjct: 62 PFLTKQ-KKLDPFMRPLLRMSVYQLFYLDRIPDHAVINEAVEIAKTRGKPHIAKVVNGVL 120 Query: 128 DKAAPVIRPN 137 +P+ Sbjct: 121 RNVLRTGKPD 130 >UniRef50_C4KD91 NusB antitermination factor n=1 Tax=Thauera sp. MZ1T RepID=C4KD91_THASP Length = 166 Score = 137 bits (347), Expect = 8e-32, Method: Composition-based stats. Identities = 61/137 (44%), Positives = 81/137 (59%), Gaps = 1/137 (0%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAE-QDVKDVDVLYFRELLAGVATNTAY 61 ARRRARE A+Q +Y W LS N+ V+ +E +++ +D F LL G Sbjct: 21 KMARRRARELALQGVYQWLLSGNNATTVQRHLESETENLDKIDRELFVSLLRGATGAADE 80 Query: 62 LDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 L G +P LSR + EL +E A+L + +EL D PY+V INEAIELAK +G D HK Sbjct: 81 LRGCFEPLLSRPVAELSPIEHAILLLGTHELRHNLDTPYRVVINEAIELAKGYGGTDGHK 140 Query: 122 FVNGVLDKAAPVIRPNK 138 FVNGVLDK + +RP + Sbjct: 141 FVNGVLDKLSTRLRPEE 157 >UniRef50_Q5X720 N utilization substance protein B homolog n=6 Tax=Legionella RepID=NUSB_LEGPA Length = 147 Score = 137 bits (347), Expect = 9e-32, Method: Composition-based stats. Identities = 52/133 (39%), Positives = 83/133 (62%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 +RRAR+ A+QALY W +S D+ ++E QF ++ VD YF LL G+ T+ L+ Sbjct: 9 KRRARKFALQALYQWLMSGTDLHEIEAQFRTINNMDKVDGEYFCRLLYGIPTHVEALEAS 68 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 + PYL R + L +E VLRI +EL ++PYKV ++E++ L K FG+++ +++VNG Sbjct: 69 LLPYLDREINALNPIELTVLRIGSFELFHCPEIPYKVILDESVSLTKEFGSQEGYRYVNG 128 Query: 126 VLDKAAPVIRPNK 138 VL+ A +R + Sbjct: 129 VLNNLAKQVRSVE 141 >UniRef50_C5TIT6 Transcription antitermination factor NusB n=5 Tax=Neisseriaceae RepID=C5TIT6_NEIFL Length = 142 Score = 137 bits (347), Expect = 9e-32, Method: Composition-based stats. Identities = 55/138 (39%), Positives = 80/138 (57%), Gaps = 1/138 (0%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK + RRRARE AVQA+Y +++ ++ ++D F +L G T+ Sbjct: 1 MK-SPRRRARELAVQAIYQAGINKTAAPEIAKNIHELSQTSNMDEELFNKLFFGTQTHAE 59 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 + P L R ++L +E+AVL +A +ELS + PY V INEAIE+ K+FG D H Sbjct: 60 EYMEKISPLLDRDEKDLSPIERAVLLVACHELSTMPETPYPVIINEAIEVTKTFGGTDGH 119 Query: 121 KFVNGVLDKAAPVIRPNK 138 KFVNG+LD+ A IRP++ Sbjct: 120 KFVNGILDQLASRIRPDE 137 >UniRef50_B3U4H5 Transcription antitermination protein n=1 Tax=Candidatus Nitrospira defluvii RepID=B3U4H5_9BACT Length = 157 Score = 137 bits (346), Expect = 1e-31, Method: Composition-based stats. Identities = 47/137 (34%), Positives = 75/137 (54%), Gaps = 2/137 (1%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 A+R +ARE AVQ L+ + + F + + + ++ L+AGV N LD Sbjct: 2 ASRHQARERAVQILFQYDIHGQ-AGPWLDDFWIQYPLAEELRVFAERLVAGVRANKKELD 60 Query: 64 GLMKPY-LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 L+ Y + + + +++ +LR+ +EL +VP KV +NEAIELAKSFG E++ KF Sbjct: 61 ALIGTYATNWKVSRMPIIDRNILRMGCFELLHVPEVPAKVTLNEAIELAKSFGDEEASKF 120 Query: 123 VNGVLDKAAPVIRPNKK 139 VNG+LDK ++ Sbjct: 121 VNGILDKLLGSDARLER 137 >UniRef50_Q2RIA9 N utilization substance protein B homolog n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=NUSB_MOOTA Length = 145 Score = 137 bits (346), Expect = 1e-31, Method: Composition-based stats. Identities = 47/137 (34%), Positives = 77/137 (56%), Gaps = 1/137 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 RR AR A+QAL++ + Q L E ++ + + REL+ G +D Sbjct: 1 MLRRAARAKALQALFAIDVGGTSPDMALEQVLEEGELPPRAMTFTRELVEGTMAKRDAID 60 Query: 64 GLMKPY-LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 +++ Y + LE L V++ +LR+ALYE+ + P +V INEAIELAK+F E++ +F Sbjct: 61 AIIRKYAVGWRLERLAAVDRNILRMALYEMQYHRETPVRVVINEAIELAKNFNNEEAGRF 120 Query: 123 VNGVLDKAAPVIRPNKK 139 VNG+LD A + +++ Sbjct: 121 VNGLLDNARKDLGLSEE 137 >UniRef50_C6X9V7 NusB antitermination factor n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6X9V7_METSD Length = 158 Score = 137 bits (346), Expect = 1e-31, Method: Composition-based stats. Identities = 51/134 (38%), Positives = 77/134 (57%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 RR++RE A++ +Y ++Q D + + E + D Y R+LL GV LD Sbjct: 19 NRRKSRELALKGIYRNLMNQADFRAILRELADEPEFDKADQEYLRKLLDGVLAEREELDR 78 Query: 65 LMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + ++ R ++EL +E +L ++ YEL +PY+VAINE +ELAK +G D HK+VN Sbjct: 79 RIAVFVDRPMQELSPIEHGILCLSAYELIFDLSIPYRVAINEGVELAKIYGGTDGHKYVN 138 Query: 125 GVLDKAAPVIRPNK 138 GVLDK A RP + Sbjct: 139 GVLDKLAAEARPGE 152 >UniRef50_C4FT85 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FT85_9FIRM Length = 457 Score = 137 bits (346), Expect = 1e-31, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 2/128 (1%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 + R A+Q L + + L++ ++K VD L+ G + LD Sbjct: 12 KHNVRFQALQLLVEIDWHDQYSNVLLNRALSQSELKPVDQGLLVNLVYGSIQHRLTLDFY 71 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 ++P++ ++L +++LR+ Y++ +P AINEA+ +AK G VNG Sbjct: 72 LEPFIKG--KKLEPWIRSLLRMTAYQMLYLERIPDHAAINEAVNIAKLNGHAGLAGLVNG 129 Query: 126 VLDKAAPV 133 VL Sbjct: 130 VLRNFRRQ 137 >UniRef50_C5EIZ3 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=C5EIZ3_9FIRM Length = 447 Score = 137 bits (345), Expect = 1e-31, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 49/128 (38%), Gaps = 1/128 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNTAYLDGLMKP 68 R + L + + V Q L + + D + + G +D ++ Sbjct: 13 RGIVLDILSEVLDKGSFVHLVLNQALQKYQYLDKSDRAFITRVTEGTLEYLLQIDHIINK 72 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 Y +++ + + +LR+++Y++ VP NEA++LA FVNGVL Sbjct: 73 YSRTKTDKMKPLIRNLLRMSVYQILYMDRVPDSAVCNEAVKLAVKRRFTGLKGFVNGVLR 132 Query: 129 KAAPVIRP 136 + Sbjct: 133 TISREKAS 140 >UniRef50_C0N8C8 Transcription antitermination factor NusB n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N8C8_9GAMM Length = 150 Score = 137 bits (345), Expect = 1e-31, Method: Composition-based stats. Identities = 50/134 (37%), Positives = 75/134 (55%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 R +AR AVQALY ++ +F+ + +D YF L+ G +D Sbjct: 6 PRTKARRAAVQALYQALVNNETPQKAGLEFVTAEYADKIDRKYFTTLIEGTIKYQQAIDA 65 Query: 65 LMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + + R L + VE +VLR+A++E ++PY+V +NEA+ELAKSFG E HK+VN Sbjct: 66 ELSEAVDRDLNAVDPVEISVLRLAVFEFMHLPEIPYRVVLNEAVELAKSFGGEQGHKYVN 125 Query: 125 GVLDKAAPVIRPNK 138 GVLDK +RP++ Sbjct: 126 GVLDKMGARLRPHE 139 >UniRef50_Q2BM00 NusB protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BM00_9GAMM Length = 159 Score = 137 bits (345), Expect = 1e-31, Method: Composition-based stats. Identities = 69/136 (50%), Positives = 92/136 (67%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 RR AR A+QALYSW L+ + ++E QF + D++D D+ F ELL +A + L Sbjct: 17 TTQRRNARSYALQALYSWTLAGQPLNELEAQFRVDNDMRDTDIRLFSELLHSIAGGKSEL 76 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 D L +L R ++EL +E VLRI YELSKR +VPY+VAINE++ELAK+FGA DSHK+ Sbjct: 77 DQLYTDFLDRNVDELDPIELNVLRIGAYELSKRFEVPYRVAINESVELAKTFGATDSHKY 136 Query: 123 VNGVLDKAAPVIRPNK 138 VNGVLDK A +R + Sbjct: 137 VNGVLDKLAQRVRMAE 152 >UniRef50_C8WW78 Sun protein n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WW78_ALIAD Length = 451 Score = 137 bits (345), Expect = 2e-31, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 1/131 (0%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 R A QAL + + + LA V + D E+ G LD L+ Sbjct: 4 EGRRRAYQALIRVERDGAFLNAALQEALAGAGVDERDRALATEIAYGTLRRQITLDRLLS 63 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 P + R + +L + +LR+ Y+++ + VP A N+A+ELAK + VN VL Sbjct: 64 PLVRRPMSKLDPEVRVILRMGAYQMTWLNRVPAYAAANDAVELAKRHR-PQAAALVNAVL 122 Query: 128 DKAAPVIRPNK 138 + A + + Sbjct: 123 RRYAERAQDWE 133 >UniRef50_P72943 Ribosomal RNA small subunit methyltransferase B n=4 Tax=Chroococcales RepID=RSMB_SYNY3 Length = 446 Score = 137 bits (345), Expect = 2e-31, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 55/130 (42%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR+ A L + + L + + D + EL+ GV LD L++ Sbjct: 4 ARQLAFLILRDINRRDSYTDVAIDRALQKHPLSPPDRRFCTELVYGVVRRQRTLDCLIEQ 63 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 R + + + ++++ LY+L VP A+N ++LAK+ G + K VNG+L Sbjct: 64 LGDRPIGKQPPDLRRIVQLGLYQLRYLDQVPASAAVNTGVDLAKANGLKGLSKVVNGMLR 123 Query: 129 KAAPVIRPNK 138 + K Sbjct: 124 RYQRAEEQGK 133 >UniRef50_B0S1M1 N utilization substance protein B homolog n=2 Tax=Finegoldia magna RepID=NUSB_FINM2 Length = 137 Score = 136 bits (344), Expect = 2e-31, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 70/134 (52%), Gaps = 1/134 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +RR++R+ A+Q +Y ++ + +F Q++ D+ +F+E++ + + Sbjct: 1 MSRRQSRKSAMQLIYEMNMNGDYDKQRIEEFCKYQNINKNDIEFFKEIVLNFIEHIDDIV 60 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 +++ + L+ + +++ ++L++ + E+ P VAINEA+ELAK + E S+ F Sbjct: 61 NIIENNTKQWNLDRINKLDLSILQVGVCEILYVESTPDSVAINEAVELAKEYSTEKSYSF 120 Query: 123 VNGVLDKAAPVIRP 136 +NG+L Sbjct: 121 INGILGSVLKRKEN 134 >UniRef50_B9M341 Sun protein n=4 Tax=Geobacter RepID=B9M341_GEOSF Length = 448 Score = 136 bits (344), Expect = 2e-31, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 1/132 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 + R A + L ++ + + L+ ++ D EL+ GV A LD Sbjct: 1 MSSSNPRSAAFEILLRIDKERSYADILIDRELSAGALQGPDRGLLTELVYGVLRRQATLD 60 Query: 64 GLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 +++ + S+ LE L + +LRI LY++ VP A+NE ++LAK + F+ Sbjct: 61 HIIRRFSSQRLERLERSVLLLLRIGLYQMFYLDRVPVSAAVNETVKLAKVLV-PRASGFI 119 Query: 124 NGVLDKAAPVIR 135 N VL A Sbjct: 120 NAVLRNADRERD 131 >UniRef50_A8PLC7 Transcription antitermination factor NusB n=1 Tax=Rickettsiella grylli RepID=A8PLC7_9COXI Length = 148 Score = 136 bits (344), Expect = 2e-31, Method: Composition-based stats. Identities = 60/133 (45%), Positives = 90/133 (67%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 A++RAR AVQA+Y WQL+Q + ++ +FLA++++K VD YF ++ G+ + LD Sbjct: 12 AKQRARRFAVQAIYQWQLTQETFSVIQTKFLAQEEMKSVDTAYFTLIVQGILNDHELLDR 71 Query: 65 LMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 ++ ++ R L +L VE A+LR+ YEL S++PYKV +NEAIELAK FGA DS+K+VN Sbjct: 72 YLQSFVDRPLCQLDCVEWAILRLGTYELLNCSEIPYKVILNEAIELAKMFGATDSYKYVN 131 Query: 125 GVLDKAAPVIRPN 137 G+L + A R Sbjct: 132 GILHRIAEKNRAI 144 >UniRef50_B8FQ61 N utilization substance protein B homolog n=2 Tax=Desulfitobacterium hafniense RepID=NUSB_DESHD Length = 148 Score = 136 bits (344), Expect = 2e-31, Method: Composition-based stats. Identities = 46/140 (32%), Positives = 81/140 (57%), Gaps = 4/140 (2%) Query: 4 AARRRARECAVQALYSWQLSQN--DIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 +RR ARE A+Q L+ +++ D+ +++ E V + + + EL G T+ Sbjct: 1 MSRRLARETALQVLFQLEMTGESQDLKSAIHKWADEFAVPEGSIPFAEELAEGTLTHKEV 60 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D ++ L + V++ +LR+A YE+ R D+P +V INEAIE+AK +G+E+S Sbjct: 61 IDENLEKLSEGWSLARMANVDRNLLRLASYEILFRKDIPGRVTINEAIEIAKRYGSEESG 120 Query: 121 KFVNGVLDKAAPVI-RPNKK 139 KF+NG+LDK + + ++K Sbjct: 121 KFINGILDKVVESVNKKDEK 140 >UniRef50_Q479L3 N utilization substance protein B homolog n=3 Tax=Betaproteobacteria RepID=NUSB_DECAR Length = 163 Score = 136 bits (343), Expect = 2e-31, Method: Composition-based stats. Identities = 53/136 (38%), Positives = 77/136 (56%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 +ARRRARE +Q LY W++ D A +E + D +F L GV + L Sbjct: 19 KSARRRAREFVLQGLYQWRVGGADEASIEAYAPEMEGFAKADREFFVGTLRGVISQQEKL 78 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + ++ R EL VE +L + +E+ ++ PY+V INEAIEL K+FG D HK+ Sbjct: 79 IEQVSTHIDRPFNELSPVEACILMLGSFEMLNHAETPYRVIINEAIELTKAFGGTDGHKY 138 Query: 123 VNGVLDKAAPVIRPNK 138 VNGVLDK A ++RP++ Sbjct: 139 VNGVLDKVAAILRPDE 154 >UniRef50_A5FQ51 N utilization substance protein B homolog n=5 Tax=Dehalococcoides RepID=NUSB_DEHSB Length = 143 Score = 136 bits (343), Expect = 2e-31, Method: Composition-based stats. Identities = 49/133 (36%), Positives = 79/133 (59%), Gaps = 1/133 (0%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 +RR+ARE +QALY L+ ++ DV + L E + +V + L V + L Sbjct: 2 TTSRRKAREIVLQALYEQDLAGHNAEDVLKRLLTENPQTEENVEFIFRLTNAVVKHKDLL 61 Query: 63 DGLMKPY-LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D ++ + + +E+L +++ VLR+A++E+ +DVP KVAINEA+ELAKSFG S + Sbjct: 62 DENIRQFASAWPVEQLSYIDRNVLRLAIFEIIHENDVPVKVAINEAVELAKSFGGNSSAR 121 Query: 122 FVNGVLDKAAPVI 134 F+NGVL + + Sbjct: 122 FINGVLSSVSKAL 134 >UniRef50_B8FHH2 Sun protein n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FHH2_DESAA Length = 455 Score = 136 bits (343), Expect = 2e-31, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 2/137 (1%) Query: 1 MKP-AARRRARECAVQALYSWQLSQNDIADVEYQFLA-EQDVKDVDVLYFRELLAGVATN 58 MKP A + ++R A + L + + V + L E + D L+ GV N Sbjct: 1 MKPPAGKDKSRITAARILDRLESGDQVLDVVLDRALDKEPGLTRKDRALVMALVYGVLRN 60 Query: 59 TAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 +D ++ + L+++ +LR+ +++L VP +A++ ++E+AK Sbjct: 61 RGRIDWIISSFSKTKLKKIQPEILNILRMGVFQLLFLDRVPPALAVDSSVEMAKKAAPVF 120 Query: 119 SHKFVNGVLDKAAPVIR 135 KFVNG+L R Sbjct: 121 VSKFVNGLLRNVERKGR 137 >UniRef50_C0GIQ4 Sun protein n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GIQ4_9FIRM Length = 451 Score = 136 bits (343), Expect = 3e-31, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 56/135 (41%), Gaps = 3/135 (2%) Query: 4 AARRR---ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 R+R ARE ++ AL + + + L+ + D E+ GV T Sbjct: 1 MTRKRKIDAREASLLALQRVEADDAYVNLALDEVLSSHSLDPRDKRLAAEITYGVITYKL 60 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD L++ R +++L + +LRI Y+L VP A++ +EL K Sbjct: 61 TLDWLIEKVSGRPIKKLDKPIHQILRIGFYQLFYLDRVPPAAAVHATVELVKKGKKRGLA 120 Query: 121 KFVNGVLDKAAPVIR 135 FVNGV+ A Sbjct: 121 PFVNGVMRGALRKKD 135 >UniRef50_C6WU13 NusB antitermination factor n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WU13_METML Length = 178 Score = 135 bits (342), Expect = 3e-31, Method: Composition-based stats. Identities = 55/134 (41%), Positives = 79/134 (58%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 RR++RE ++A+Y L+ ++++ V + D D YF+ LL V N +DG Sbjct: 39 NRRKSRELVLKAVYRGMLNDSELSQVFRDMRDDPDYNKADEAYFKHLLQAVTENLTAIDG 98 Query: 65 LMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + ++ R LEEL VE A+LRIA EL +PY+V INE +ELAK FG D HK++N Sbjct: 99 KIVGFIDRTLEELSPVEHAILRIAGCELMFDLSIPYRVVINEGVELAKVFGGTDGHKYIN 158 Query: 125 GVLDKAAPVIRPNK 138 GVLDK A +R + Sbjct: 159 GVLDKFAADVRAAE 172 >UniRef50_C9RZP8 Sun protein n=5 Tax=Bacillales RepID=C9RZP8_GEOSY Length = 444 Score = 135 bits (342), Expect = 3e-31, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 1/127 (0%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 RE A+ L + + + + + + D E++ G LD + Sbjct: 2 NVRELALDTLLAIEQKGAYSHLQLNEAIQKGRLDGRDAALLTEIVYGTVQRRDTLDYYLA 61 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 P+L R L + +LR+ LY++ VP + A+ EA+E+AK G VNGVL Sbjct: 62 PFL-RKARRLEPWVRVLLRLTLYQMVYLDRVPDRAAVFEAVEIAKRRGHRGIASLVNGVL 120 Query: 128 DKAAPVI 134 Sbjct: 121 RAIGREG 127 >UniRef50_B0UU23 N utilization substance protein B homolog n=33 Tax=Gammaproteobacteria RepID=NUSB_HAES2 Length = 144 Score = 135 bits (342), Expect = 4e-31, Method: Composition-based stats. Identities = 70/132 (53%), Positives = 91/132 (68%), Gaps = 2/132 (1%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFL--AEQDVKDVDVLYFRELLAGVATNT 59 K + RRRARECAVQ LYSW +S+N ++E F+ + ++K VD+ YFR+L + Sbjct: 7 KISPRRRARECAVQNLYSWAISKNSPEEIELNFIVDQDNEMKGVDMPYFRKLFHQTINHV 66 Query: 60 AYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D M PYL R EL +E A+LR+A+YEL DVPYKV INEAIE+AK FGAE+S Sbjct: 67 ETIDSTMAPYLDRDNVELDPIECAILRLAVYELKFELDVPYKVVINEAIEVAKVFGAEES 126 Query: 120 HKFVNGVLDKAA 131 HK++NGVLDK A Sbjct: 127 HKYINGVLDKIA 138 >UniRef50_B8D9P0 N utilization substance protein B homolog n=5 Tax=Buchnera aphidicola RepID=NUSB_BUCA5 Length = 143 Score = 135 bits (341), Expect = 4e-31, Method: Composition-based stats. Identities = 80/139 (57%), Positives = 108/139 (77%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MKP+ RR+AR CA+Q LYSW++S N+I + FL E++ K++D++YF EL+ G+ + Sbjct: 1 MKPSFRRKARACALQVLYSWEISHNNIKESAIYFLKEKNKKNIDIVYFYELIIGITYDCK 60 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D LMKPYL R L+ELG +E+A+LRI+ YEL KR+D+PYKV+INE IELAK FG+EDSH Sbjct: 61 NIDNLMKPYLFRSLKELGHIERAILRISFYELHKRNDIPYKVSINEGIELAKLFGSEDSH 120 Query: 121 KFVNGVLDKAAPVIRPNKK 139 KF+NGVLDKA + NKK Sbjct: 121 KFINGVLDKAVFKMGYNKK 139 >UniRef50_B8CWT0 Sun protein n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWT0_HALOH Length = 440 Score = 135 bits (341), Expect = 5e-31, Method: Composition-based stats. Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 2/129 (1%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 +R+ A++ L V + L + D + EL+ GV LD ++ Sbjct: 4 SRKVAIKVLIEID-KGAYSNLVLNKELNKVS-DKRDRAFITELVYGVLRQKKRLDYMLSC 61 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 + R L ++ + LR+ALY++ VP + A+ E +E KSF + KF NGVL Sbjct: 62 FSKRPLRKMDNEVLSALRVALYQIEYTDSVPARAAVYETVEALKSFTGHGAVKFTNGVLR 121 Query: 129 KAAPVIRPN 137 Sbjct: 122 SYLRNKDKI 130 >UniRef50_Q0AZF7 N utilization substance protein B homolog n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=NUSB_SYNWW Length = 134 Score = 135 bits (340), Expect = 5e-31, Method: Composition-based stats. Identities = 38/133 (28%), Positives = 65/133 (48%), Gaps = 1/133 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +RR+ARE A + ++ Q D + + + + + +L+ G A +D Sbjct: 1 MSRRKARETAFKVVFQVDQVQADAKKAFDYLVLHDKLAEKNQGFSWDLIQGTLEKQAEID 60 Query: 64 GLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ Y L+ + V++ ++R+A YE+ D VAI+EAIE+AK +G E S F Sbjct: 61 QMIASYSREWALDRMSSVDRNIMRVAAYEILYLEDSQAVVAIDEAIEIAKKYGDEGSGSF 120 Query: 123 VNGVLDKAAPVIR 135 VN +LDK Sbjct: 121 VNAILDKILGEKN 133 >UniRef50_A0L3Z8 NusB antitermination factor n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L3Z8_MAGSM Length = 165 Score = 135 bits (340), Expect = 6e-31, Method: Composition-based stats. Identities = 47/138 (34%), Positives = 79/138 (57%), Gaps = 1/138 (0%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 M+ R ++RE A+Q LY +++ + + L + + +D YF +L GV Sbjct: 15 MRRGGRSKSREIALQVLYGCEIAHDPVGPALRNMLEDPHSEGMDQDYFSQLTLGVEAERE 74 Query: 61 YLDGLMKPY-LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 LD + + ++ V+ +LR+ +YEL K+ +VP++V +NEAIEL+K FG E+S Sbjct: 75 VLDSWIGRAGAAWSMDRFSVVDHNILRLGIYELLKQPEVPHRVILNEAIELSKRFGGEES 134 Query: 120 HKFVNGVLDKAAPVIRPN 137 +FVNGV+DK A ++R Sbjct: 135 SRFVNGVMDKVANLVREE 152 >UniRef50_D0BMY2 Ribosomal RNA small subunit methyltransferase B n=2 Tax=Granulicatella RepID=D0BMY2_9LACT Length = 441 Score = 135 bits (340), Expect = 6e-31, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 2/133 (1%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 + R V L + Q+ + + +Q D EL G +D + Sbjct: 3 KVRNAVVDLLVQVEQDQSYSTISLKKVIEQQKWTAKDKGLLTELFYGTIQRKMTIDFYLA 62 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 PY+ + +++ K +LRI++Y++ +P AI EA+++AK G + KFVNGVL Sbjct: 63 PYIQKA-KKIQPWVKQLLRISIYQMVFLDKIPDHAAIFEAVQIAKKRGHQGIAKFVNGVL 121 Query: 128 DKAAP-VIRPNKK 139 +R ++ Sbjct: 122 RNFQRNDLRSFEE 134 >UniRef50_C0GMV1 NusB antitermination factor n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GMV1_9DELT Length = 157 Score = 134 bits (339), Expect = 6e-31, Method: Composition-based stats. Identities = 52/140 (37%), Positives = 75/140 (53%), Gaps = 4/140 (2%) Query: 3 PAARRRARECAVQALYSW--QLSQNDIADVEYQFLAEQDVK-DVDVLYFRELLAGVATNT 59 +R RE A Q LYS + I D + F +QD D+ Y +L+ GV N Sbjct: 11 THSRHAQREFAFQVLYSLHFDQTGTHILDTFHHFKNDQDTAVQQDMSYALQLINGVRENL 70 Query: 60 AYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 LD + + ++ + VE ++R+A+YE+ R D+P KV INEAIELAK+FG + Sbjct: 71 EELDAAIGRHSQNWKVKRIAMVELTIMRLAVYEMIYREDIPVKVGINEAIELAKTFGDNN 130 Query: 119 SHKFVNGVLDKAAPVIRPNK 138 S FVNG+LD A +R + Sbjct: 131 SRNFVNGILDAVARDMRHGE 150 >UniRef50_Q1ISD3 N utilization substance protein B homolog n=2 Tax=Acidobacteria RepID=NUSB_ACIBL Length = 146 Score = 134 bits (339), Expect = 7e-31, Method: Composition-based stats. Identities = 38/140 (27%), Positives = 70/140 (50%), Gaps = 2/140 (1%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFL-AEQDVKDVDVLYFRELLAGVATNTA 60 K RR++RE A+Q L+ + + VE F +D+++ + +L + Sbjct: 4 KTGTRRKSRELALQMLFQMDMGKQSADHVEKTFWAERKDLEEEVRSFAIDLFHVAEKRSE 63 Query: 61 YLDGLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D L++ + +E + V++ +LR A E P V INE++E+A+ F + +S Sbjct: 64 EIDKLIEKHAEHWRMERMAAVDRNILRGACAEFMGFPKTPKPVVINESLEIARRFSSPES 123 Query: 120 HKFVNGVLDKAAPVIRPNKK 139 +F+NGVLD A + +K Sbjct: 124 VQFINGVLDSVARELDAERK 143 >UniRef50_C4L3F7 N utilization substance protein B homolog n=2 Tax=Exiguobacterium RepID=NUSB_EXISA Length = 128 Score = 134 bits (339), Expect = 7e-31, Method: Composition-based stats. Identities = 44/131 (33%), Positives = 70/131 (53%), Gaps = 5/131 (3%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 R ARE A+Q L+ ++S+ ++ + L ++ ++ +L+ G + +D Sbjct: 1 MKRHEAREKAIQTLFQIEVSKLEVDEAIEFALDGEESDP----FYEQLVTGTLEHIEDID 56 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 L+ L L+ LG VE+ +LR+A +EL +P V INEA+ELAKSFG E++ K Sbjct: 57 ALLVENLKNWRLDRLGNVERTILRMATFELLYVETIPENVTINEAVELAKSFGDEEAGKL 116 Query: 123 VNGVLDKAAPV 133 VNGVL Sbjct: 117 VNGVLGNIIKE 127 >UniRef50_B2A2K5 Sun protein n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A2K5_NATTJ Length = 462 Score = 134 bits (339), Expect = 8e-31, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 50/135 (37%), Gaps = 3/135 (2%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK + +RE A A Q V Q L + D+ D + G Sbjct: 1 MKIKS---SRELAFVAYTRIIQDQAYSNLVLNQLLGKTDLLAQDKALASRITYGTLQWQG 57 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D +K R L +L +LR+ Y++ VP ++NE +++A + Sbjct: 58 LIDYYLKTLSHRPLSKLSNKALFLLRMGAYQILFLDRVPPSASVNETVKVAHRRTHKGIA 117 Query: 121 KFVNGVLDKAAPVIR 135 FVNG+L Sbjct: 118 NFVNGILRNLIRKKD 132 >UniRef50_Q1N2N9 Transcription antitermination protein NusB n=1 Tax=Bermanella marisrubri RepID=Q1N2N9_9GAMM Length = 128 Score = 134 bits (338), Expect = 8e-31, Method: Composition-based stats. Identities = 59/125 (47%), Positives = 85/125 (68%) Query: 14 VQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL 73 +QALY W L+ ++++E +FL + D+ VD YFR++L GV LD + P LSR Sbjct: 1 MQALYQWDLAGASLSNIEAEFLTDNDMSKVDTEYFRDILRGVPRELDDLDEKLAPCLSRN 60 Query: 74 LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPV 133 ++E+ VE+A+LR+ YEL R DVPY+V INE++EL+K FGA +SHKF+NG LDK A Sbjct: 61 MQEVTPVERAILRLGAYELLHRIDVPYRVVINESVELSKKFGANESHKFINGALDKLAQA 120 Query: 134 IRPNK 138 +R + Sbjct: 121 VRVVE 125 >UniRef50_C6PE58 NusB/RsmB/TIM44 protein n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PE58_CLOTS Length = 199 Score = 134 bits (338), Expect = 8e-31, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 57/126 (45%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 R A + LY + + V ++L ++DV+ + +E++ G LD ++ Sbjct: 2 NQRNIAFKILYEILVKKGYSNIVLNKYLNNDGIEDVEKSFIKEIVFGTIERKYTLDRIID 61 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 ++ ++++ +L + L++L VP AINE++ L K + + KFVN VL Sbjct: 62 YCSTKDIKKIDNKVLIILEMGLFQLMYMDKVPDYAAINESVNLTKEHVGKYASKFVNAVL 121 Query: 128 DKAAPV 133 Sbjct: 122 RSYLRN 127 >UniRef50_C0GE32 NusB antitermination factor n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GE32_9FIRM Length = 138 Score = 134 bits (338), Expect = 9e-31, Method: Composition-based stats. Identities = 48/136 (35%), Positives = 79/136 (58%), Gaps = 1/136 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +RR ARE A + L+ + + +N++ Q + E ++ V + R+L+ G N +D Sbjct: 1 MSRRLAREIAFKTLFQYDIGKNEVEPTISQLIEENGLEGAGVEFSRQLVLGTLKNLEAID 60 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + YL + L L V++ VLR+A +E+ R D+P V INEA+EL+K+F +E++ KF Sbjct: 61 KALAGYLQKWELGRLAAVDRNVLRLAAFEILYREDIPAAVTINEALELSKAFHSEEAAKF 120 Query: 123 VNGVLDKAAPVIRPNK 138 +NGVLDK A + Sbjct: 121 LNGVLDKLARHHEGKE 136 >UniRef50_C0EY63 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0EY63_9FIRM Length = 466 Score = 134 bits (338), Expect = 1e-30, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 55/137 (40%), Gaps = 2/137 (1%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDV-DVLYFRELLAGVATNT 59 M+ R R A+ L + ++ + L + D ++ L GV Sbjct: 14 MQMEKRTDMRAEALDTLIDIERNKKLSHIAIGETLMRNQFEKKADRAFYTRLCEGVTERK 73 Query: 60 AYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 YLD ++ Y +++ + +++LR+ Y++ DV A +EA+ LAK G Sbjct: 74 IYLDYILDHYSKTPMKKCKPLIRSLLRMGAYQILFM-DVRDAAACSEAVSLAKKRGFGRL 132 Query: 120 HKFVNGVLDKAAPVIRP 136 FVNGVL Sbjct: 133 SGFVNGVLRTLVREKEN 149 >UniRef50_C1DB31 N utilization substance protein B homolog n=3 Tax=Neisseriaceae RepID=NUSB_LARHH Length = 165 Score = 133 bits (337), Expect = 1e-30, Method: Composition-based stats. Identities = 58/138 (42%), Positives = 83/138 (60%), Gaps = 1/138 (0%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK RRRARE AVQ +Y WQL+ A +E + D FR LL GV + Sbjct: 1 MKT-PRRRAREFAVQGIYQWQLNALTPATIEKNLRDNEQFAKADEALFRTLLYGVLNDPV 59 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 ++ + + R E++ VE+AVL +A +EL+++++ P V INEAIE+AK+FG + H Sbjct: 60 RIESAIASHFERAPEDVSPVERAVLLMAAFELTQQAETPLAVIINEAIEIAKTFGGAEGH 119 Query: 121 KFVNGVLDKAAPVIRPNK 138 +FVNGVLDK A +RP + Sbjct: 120 RFVNGVLDKYAAEVRPEE 137 >UniRef50_C7LSH4 NusB antitermination factor n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LSH4_DESBD Length = 154 Score = 133 bits (337), Expect = 1e-30, Method: Composition-based stats. Identities = 50/142 (35%), Positives = 72/142 (50%), Gaps = 6/142 (4%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVE----YQFLAEQDVK-DVDVLYFRELLAGVAT 57 RR R A Q +YS Q D F E++ + Y L+ GV Sbjct: 2 THNRRHQRRFAFQVIYSLVFGQKMSKDSLIKSFDNFWTEEEFDMERQDSYAWTLVEGVFD 61 Query: 58 NTAYLDGLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 N +D ++ + L + +VE +LR++L+E+ D+P KVA+NEAIELAK FG Sbjct: 62 NYDSIDEIITQHSQHWKLNRIAKVELTILRLSLFEMLFCPDIPIKVAMNEAIELAKDFGD 121 Query: 117 EDSHKFVNGVLDKAAPVIRPNK 138 ++S FVNGVLD AA + N+ Sbjct: 122 DNSKTFVNGVLDAAAKGAQRNE 143 >UniRef50_A6Q4Q9 N utilization substance protein B homolog n=20 Tax=Epsilonproteobacteria RepID=NUSB_NITSB Length = 139 Score = 133 bits (337), Expect = 1e-30, Method: Composition-based stats. Identities = 44/137 (32%), Positives = 75/137 (54%), Gaps = 2/137 (1%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 A R +ARE + LY++ L +I L E+ +++ + L G + +D Sbjct: 2 ATRHQAREAVIGLLYAYDLGNPEIKKFAEDILEEKKIRNKQREFALALFKGTVEHLDTID 61 Query: 64 GLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++K +L +E +G +E+A+LR+ +YEL +D+ + INEA+ELAK G + S KF Sbjct: 62 EMIKKHLESWDMERVGHIERAILRLGVYELFY-TDLDPAIVINEAVELAKKLGTDQSPKF 120 Query: 123 VNGVLDKAAPVIRPNKK 139 +NGVLD A ++ + Sbjct: 121 INGVLDAIAKEVKNGSQ 137 >UniRef50_C9LLK5 Ribosomal RNA small subunit methyltransferase B n=1 Tax=Dialister invisus DSM 15470 RepID=C9LLK5_9FIRM Length = 454 Score = 133 bits (337), Expect = 1e-30, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 50/125 (40%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR A +ALY L +K + EL+ GV Y ++ Sbjct: 12 ARTLAFEALYEIFEKNAYANLTIQSILRWCPLKKEERHLLTELIYGVCRKYNYCLWMISL 71 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 R + ++ + +L + +Y++ +P A+NE +++AK + KF+NGVL Sbjct: 72 ISDRPMFKIHPAVRILLALGIYQIVFLDRIPESAAVNETVKIAKKVTHIGNVKFINGVLR 131 Query: 129 KAAPV 133 Sbjct: 132 NFLRR 136 >UniRef50_UPI00006A2BCA UPI00006A2BCA related cluster n=1 Tax=Xenopus (Silurana) tropicalis RepID=UPI00006A2BCA Length = 151 Score = 133 bits (337), Expect = 1e-30, Method: Composition-based stats. Identities = 52/136 (38%), Positives = 71/136 (52%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 +AR RARE A+QALY + +N+ + ++ D ++ LL G L Sbjct: 11 KSARSRAREFALQALYQHLVGRNEASAIDLFTRDLAGFHKADAAHYDALLHGCVRTEDAL 70 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 D L+ P L R L +E AV+ I YE DVP++V +NE IELAK FG D HK+ Sbjct: 71 DALIVPQLDRPLAAFSPIEHAVMWIGAYEFQHCMDVPWRVTLNECIELAKEFGGTDGHKY 130 Query: 123 VNGVLDKAAPVIRPNK 138 VN VL AP +R + Sbjct: 131 VNAVLGGLAPRLRAAE 146 >UniRef50_A0Q099 N utilization substance protein B homolog n=3 Tax=Clostridium RepID=NUSB_CLONN Length = 133 Score = 133 bits (336), Expect = 1e-30, Method: Composition-based stats. Identities = 43/132 (32%), Positives = 77/132 (58%), Gaps = 3/132 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQD--VKDVDVLYFRELLAGVATNTAY 61 RR++RE A++ L+ +++ + +++ F D +++VD +Y +++ G+ N Sbjct: 1 MNRRKSREVAMKLLFEMSINKEEFSEILKNFKENTDTNMENVDFIYINKIVNGIEQNKED 60 Query: 62 LDGLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D ++ L L L +++ +LRI+ YE+ D+P KVA+NEAIELAK + A++S Sbjct: 61 IDKKIEENLTKWKLNRLSKIDLTILRISTYEIMFMEDIPNKVAVNEAIELAKKYSADNSP 120 Query: 121 KFVNGVLDKAAP 132 FVNGVL Sbjct: 121 AFVNGVLGNMIK 132 >UniRef50_A5F5Z6 N utilization substance protein B homolog n=91 Tax=Gammaproteobacteria RepID=NUSB_VIBC3 Length = 156 Score = 133 bits (336), Expect = 2e-30, Method: Composition-based stats. Identities = 79/149 (53%), Positives = 105/149 (70%), Gaps = 14/149 (9%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDV--------------DVLY 47 KPAARR AR+ A+QA+YSWQ+++ ++A +E QFL + DV Y Sbjct: 6 KPAARRNARQFALQAIYSWQITKENVATIEEQFLTSGKYDEEEHRAAEPALAAPETDVSY 65 Query: 48 FRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEA 107 FR+LLAGV N LD ++P++SR +++L +E A+LR+A+YE+++R DVPYKV INEA Sbjct: 66 FRDLLAGVVLNHNELDSKLRPFVSRPMQDLDMMELALLRLAMYEMTRREDVPYKVVINEA 125 Query: 108 IELAKSFGAEDSHKFVNGVLDKAAPVIRP 136 IELAK F AEDSHKFVNGVLDKAAP +R Sbjct: 126 IELAKVFAAEDSHKFVNGVLDKAAPHVRK 154 >UniRef50_C8WLN1 NusB antitermination factor n=2 Tax=Coriobacteriaceae RepID=C8WLN1_EGGLE Length = 195 Score = 133 bits (335), Expect = 2e-30, Method: Composition-based stats. Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 3/139 (2%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 K R AR A+Q LY+ +++ + + D Y +L+ GV ++ Sbjct: 4 KRHERTSARRAALQVLYTSEITDESP-AAIAEGNSRLDEDGPLPEYALKLVLGVESHRCA 62 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED-S 119 +D + L + V++++LR+A +E+ DVP V INEA+ELAK FG ED S Sbjct: 63 IDNHLAATSENWSLARMPIVDRSILRLATFEMMYIDDVPTSVTINEAVELAKDFGGEDES 122 Query: 120 HKFVNGVLDKAAPVIRPNK 138 H+FVNG+L + A ++ + Sbjct: 123 HRFVNGILGRIAKMLEGEE 141 >UniRef50_B3QV72 N utilization substance protein B homolog n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=NUSB_CHLT3 Length = 211 Score = 133 bits (335), Expect = 2e-30, Method: Composition-based stats. Identities = 42/136 (30%), Positives = 73/136 (53%), Gaps = 2/136 (1%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKD-VDVLYFRELLAGVATNTAYLD 63 +RR+ RE A+Q LY++++ + + V + E V D + +++ V N +D Sbjct: 4 SRRQIRELAMQVLYAYEVRKEKVDKVAKGIIPEDVVADIKAKDFIFKIINSVIQNIQDID 63 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + + L + ++K ++RIA+ E+ DVP KV+INEAIE+AK + + S KF Sbjct: 64 THIAKHADNWELNRMAIIDKNLMRIAIAEMLYLDDVPPKVSINEAIEIAKRYSTDKSSKF 123 Query: 123 VNGVLDKAAPVIRPNK 138 VNG+LD ++ Sbjct: 124 VNGILDATYNEVKSKG 139 >UniRef50_D1VSJ6 Transcription antitermination factor NusB n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSJ6_9FIRM Length = 139 Score = 133 bits (335), Expect = 2e-30, Method: Composition-based stats. Identities = 40/135 (29%), Positives = 75/135 (55%), Gaps = 1/135 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 R+ AR A+Q LYS +L+++ + +F D + + Y +++ + N +D Sbjct: 1 MGRKNARVGAMQLLYSMELNKDFSQENIEKFFENYDFSESEQSYINSVISELVNNLDSVD 60 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ L + L V++ +LR+A++E R D+P +V+INEA+E+AK + +E+S KF Sbjct: 61 KVLSDNLQGWTIPRLATVDREILRVAIFEFLYRKDIPVEVSINEAVEIAKKYSSEESPKF 120 Query: 123 VNGVLDKAAPVIRPN 137 VNG+L ++ Sbjct: 121 VNGILASILKNLKDE 135 >UniRef50_Q1D350 N utilization substance protein B homolog n=2 Tax=Cystobacterineae RepID=NUSB_MYXXD Length = 140 Score = 132 bits (334), Expect = 3e-30, Method: Composition-based stats. Identities = 48/133 (36%), Positives = 79/133 (59%), Gaps = 5/133 (3%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDV----KDVDVLYFRELLAGVATNT 59 ARR RE A+QALY +++ A+ + + V + REL+ GV ++ Sbjct: 2 GARRTGRERALQALYQLEMATATTAEALESAWSAAEESNKRDPDAVKFARELVEGVQSHR 61 Query: 60 AYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 +D L++ + L+ + ++++ VLR+ ++EL R D+P KV+INEA+EL K+FG E+ Sbjct: 62 DEIDQLIERHSHNWRLDRMSRIDRNVLRLGIFELKYRPDIPRKVSINEAVELGKNFGNEE 121 Query: 119 SHKFVNGVLDKAA 131 S FVNG+LD+ A Sbjct: 122 SSAFVNGLLDRVA 134 >UniRef50_A8ZTU6 N utilization substance protein B homolog n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=NUSB_DESOH Length = 154 Score = 132 bits (334), Expect = 3e-30, Method: Composition-based stats. Identities = 47/139 (33%), Positives = 77/139 (55%), Gaps = 4/139 (2%) Query: 4 AARRRARECAVQALYSWQLSQN---DIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 A+RRR+RE A+Q L+S+ L+ D F A ++ + + +F L GV Sbjct: 2 ASRRRSRELALQFLFSYDLNAAGAGDFDAWMEDFCARFNLSEKNFPHFFTLAQGVKNRWE 61 Query: 61 YLDGLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 L+ L+ L + V++ V+RIA++E+ DVP +VAINEAIE+ K +G ++S Sbjct: 62 KLNDLLAESSEHWKLSRMSGVDRNVMRIAIFEMLYCDDVPPRVAINEAIEIGKKYGTDES 121 Query: 120 HKFVNGVLDKAAPVIRPNK 138 F+NGVLD+ + ++ Sbjct: 122 GAFINGVLDRINKELGGSE 140 >UniRef50_B7KB91 Sun protein n=19 Tax=Cyanobacteria RepID=B7KB91_CYAP7 Length = 452 Score = 132 bits (334), Expect = 3e-30, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 53/132 (40%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLM 66 + R+ A+ L + Q + D+ ++D EL+ G+ LD ++ Sbjct: 6 KNPRQLALIILRDIYQKEAYTDLALDQGIKRADLGNLDRGLVTELVYGIVRRQRTLDEII 65 Query: 67 KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGV 126 ++ + + +L I LY+L +P A+N ++ELAK VNG+ Sbjct: 66 SQLGTKKANQQPPDLRLILHIGLYQLRYLDQIPPSAAVNTSVELAKKNKLGKLSGVVNGI 125 Query: 127 LDKAAPVIRPNK 138 L + + K Sbjct: 126 LRQYDRIKEQGK 137 >UniRef50_C5CI90 NusB antitermination factor n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CI90_KOSOT Length = 148 Score = 132 bits (333), Expect = 4e-30, Method: Composition-based stats. Identities = 41/140 (29%), Positives = 72/140 (51%), Gaps = 3/140 (2%) Query: 3 PAARRRARECAVQALYSWQLSQNDIA--DVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 RR+ RE ++++ + ++ A + + A + + L G+ + Sbjct: 6 TGQRRKIREIVFRSIFQYDFHKDFPAAMEYLERETAFYSLDKESKNRAKGYLMGIIEHLD 65 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D ++ YL + L ++++VLR+A YEL DVP +V +NEAIE+ K +G+++ Sbjct: 66 EIDSIITAYLKNWTFDRLASIDRSVLRLATYELLYVDDVPIEVTLNEAIEITKKYGSQEE 125 Query: 120 HKFVNGVLDKAAPVIRPNKK 139 KFVNGVLDK A +K Sbjct: 126 GKFVNGVLDKIAKERVSEEK 145 >UniRef50_A6W2L6 N utilization substance protein B homolog n=4 Tax=Gammaproteobacteria RepID=NUSB_MARMS Length = 174 Score = 132 bits (333), Expect = 4e-30, Method: Composition-based stats. Identities = 66/135 (48%), Positives = 94/135 (69%), Gaps = 2/135 (1%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFL--AEQDVKDVDVLYFRELLAGVATNTAYLD 63 R +R A+QA+Y WQ+++ ++++E QF+ ++D+ D +YFRELL GV + LD Sbjct: 27 RSASRRLALQAVYQWQMNKTAVSEIETQFVIDQDRDMDSCDKVYFRELLQGVTASAKKLD 86 Query: 64 GLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 L + L R L EL +E AV+RI YELS+R DVPY+VAINE++ELAK FGA +SHK+V Sbjct: 87 TLFEELLDRPLSELDPIELAVMRIGSYELSQRLDVPYRVAINESVELAKGFGATESHKYV 146 Query: 124 NGVLDKAAPVIRPNK 138 NG+LDK A +R + Sbjct: 147 NGILDKLAQRVRREE 161 >UniRef50_Q3BXH9 N utilization substance protein B homolog n=20 Tax=Xanthomonadaceae RepID=NUSB_XANC5 Length = 162 Score = 132 bits (333), Expect = 4e-30, Method: Composition-based stats. Identities = 63/124 (50%), Positives = 81/124 (65%) Query: 15 QALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLL 74 QA+Y+WQ+S V QF EQ + D+ YF L+ GV +N A LD + PYL R + Sbjct: 30 QAVYAWQISGGFAKQVIAQFAHEQAHEVADLAYFENLVEGVLSNRAELDTALTPYLDRSV 89 Query: 75 EELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVI 134 EE+ +E+AVLR+A YEL R DVPY+V INEAIE AK FG+E H +VNGVLD+AA Sbjct: 90 EEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRFGSEHGHTYVNGVLDRAAVEW 149 Query: 135 RPNK 138 R + Sbjct: 150 RKVE 153 >UniRef50_D1CCN3 NusB antitermination factor n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CCN3_THET1 Length = 153 Score = 132 bits (332), Expect = 4e-30, Method: Composition-based stats. Identities = 47/133 (35%), Positives = 78/133 (58%), Gaps = 1/133 (0%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 R +AR A+Q LY + ++ ++ + E+++ + Y +L GV N D Sbjct: 11 QRHQARALAMQVLYEAETTRKQPYEILQRRRNEENIPEQVHAYASDLAIGVWQNRKEYDS 70 Query: 65 LMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 L+ + + ++++ +V++ +LRIA++E+ +R+DVP AINEA+ELAK +GAE S KFV Sbjct: 71 LITRFTPTWTIDQMAKVDRNILRIAVHEMLRRNDVPIAAAINEAVELAKEYGAEASPKFV 130 Query: 124 NGVLDKAAPVIRP 136 NGVL A I Sbjct: 131 NGVLGAIADAIES 143 >UniRef50_Q3A7Z0 Sun protein n=2 Tax=Desulfuromonadales RepID=Q3A7Z0_PELCD Length = 451 Score = 132 bits (332), Expect = 5e-30, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 2/125 (1%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLA-EQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 R A L + L D+ D EL+ GV LD ++ Sbjct: 7 RHIAFDILDKVH-NGAFADLALDSALQALPDMDVRDRALATELVYGVLRYRGRLDFALQQ 65 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 + L ++ +LR+ Y++ + +P A+ E +ELA+ + + F+NG+L Sbjct: 66 LCRKPLAKVEPAVLNLLRLGCYQILQLDRIPNHAAVFETVELARRLKLQRATGFINGILR 125 Query: 129 KAAPV 133 Sbjct: 126 GLVRQ 130 >UniRef50_Q3A4L2 N utilization substance protein B homolog n=2 Tax=Desulfuromonadales RepID=NUSB_PELCD Length = 156 Score = 131 bits (331), Expect = 6e-30, Method: Composition-based stats. Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 18/153 (11%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDV----------------KDVD 44 M RR RE A++ +YS+ + + + F + + Sbjct: 1 MASGMRRTGRELAIKIIYSFDGTG-SVEALLATFWSNFRFRDDVLGEPLEDSSQAVAEPV 59 Query: 45 VLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVA 103 + +L+ GVA N +DGL+ + + LE + +V+ A+LR+A YEL DVP V Sbjct: 60 REFAEDLVRGVAENLEKIDGLIGEFSTNWSLERMARVDLAILRMATYELLGHLDVPVSVI 119 Query: 104 INEAIELAKSFGAEDSHKFVNGVLDKAAPVIRP 136 INEA+E+ K +G +++ FVNG+LD+ + RP Sbjct: 120 INEAVEIGKRYGTKETPSFVNGILDRISRTCRP 152 >UniRef50_C6R1D5 Ribosomal RNA small subunit methyltransferase B n=1 Tax=Rothia mucilaginosa ATCC 25296 RepID=C6R1D5_9MICC Length = 659 Score = 131 bits (331), Expect = 6e-30, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 56/139 (40%), Gaps = 5/139 (3%) Query: 3 PAARRR----ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATN 58 P+AR R AR L S S V + + + D + EL G + Sbjct: 155 PSARSRTADTARATVFDVLRSVAESDAYANLVLPKAIRSHRLDHRDAGFATELTYGTLRH 214 Query: 59 TAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 D ++ + R +E++G VLR+ +++L VP A+N+++ LA+ Sbjct: 215 QGTYDAILSRCVDRPIEKVGTTTLIVLRMGVHQLLNM-RVPAHAALNQSVSLAREKIGAG 273 Query: 119 SHKFVNGVLDKAAPVIRPN 137 F+N VL + + Sbjct: 274 PASFINAVLRRVSERTPEE 292 >UniRef50_C4V0R0 rRNA SAM-dependent methyltransferase RmsB n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V0R0_9FIRM Length = 449 Score = 131 bits (331), Expect = 6e-30, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 1/128 (0%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 R RE A+Q L + L + + D + EL+ G LD +++ Sbjct: 12 RIREQAMQVLLRIHSEGAYANVALAEELRIAQMTERDRRFLTELVYGTVKAGETLDYMIR 71 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 Y++ L++ + +LR+ Y++ +P + A+ELAK G + + FVNGVL Sbjct: 72 RYVA-DLKKAQPPIRELLRLGFYQIFFMDKIPSSAVCHTAVELAKKHGGKGAASFVNGVL 130 Query: 128 DKAAPVIR 135 A + Sbjct: 131 RTALREPK 138 >UniRef50_Q1H424 N utilization substance protein B homolog n=2 Tax=Betaproteobacteria RepID=NUSB_METFK Length = 154 Score = 131 bits (331), Expect = 6e-30, Method: Composition-based stats. Identities = 56/134 (41%), Positives = 81/134 (60%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 +RR++RE ++ +Y ++Q D + + + + D D YFR+LL GVA + LD Sbjct: 15 SRRKSRELVLKGIYLGLMNQKDTSVIIRELADDPDFDRADYEYFRQLLEGVAESIDELDA 74 Query: 65 LMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + L R + EL +E A+L IA YEL +PY+VAINE +ELAK +G D HK+VN Sbjct: 75 RLAGLLDRQVSELSPIEHAILCIAAYELIHDVTIPYRVAINEGVELAKLYGGTDGHKYVN 134 Query: 125 GVLDKAAPVIRPNK 138 GVLDK A RP++ Sbjct: 135 GVLDKIAAEARPDE 148 >UniRef50_C0W1K3 16S rRNA m(5)C 967 methyltransferase n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0W1K3_9ACTO Length = 487 Score = 131 bits (331), Expect = 6e-30, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 1/131 (0%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 K A +AR A + L + V + + E ++ D + EL+ G N A Sbjct: 23 KQARVSKARTVAFETLLKVDVEDAYANIVLPKAITEANLDSRDASFATELVYGTLRNLAR 82 Query: 62 LDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 +D +++ + + + +L +A+LR+ +++ VP A+ E++EL K K Sbjct: 83 VDWVIEQCMPKKIADLDPEVRAILRLTAHQILHL-RVPDHAAVAESVELTKHVAGFGVEK 141 Query: 122 FVNGVLDKAAP 132 FVNGV Sbjct: 142 FVNGVARAMVE 152 >UniRef50_A8LE23 Fmu (Sun) domain protein n=3 Tax=Frankia RepID=A8LE23_FRASN Length = 495 Score = 131 bits (331), Expect = 6e-30, Method: Composition-based stats. Identities = 33/142 (23%), Positives = 57/142 (40%), Gaps = 7/142 (4%) Query: 1 MKPAARRR------ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAG 54 M +A RR AR A + L + + L+ + + D + EL G Sbjct: 1 MSVSAPRRGGTTDPARLLAWEVLRAVDERGAYANLLLPALLSGRRLSPRDRGFATELTYG 60 Query: 55 VATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 LDG++ SR + + + LR+ Y+L + VP + A+ ++L ++ Sbjct: 61 SLRAQGTLDGVLDTVTSRPVASVDPPVRDALRLGAYQLL-STRVPPRAAVASTVDLVRAT 119 Query: 115 GAEDSHKFVNGVLDKAAPVIRP 136 E +F N VL + A I Sbjct: 120 CGERPVRFANAVLRRVAARIEA 141 >UniRef50_Q136T4 N utilization substance protein B homolog n=36 Tax=Alphaproteobacteria RepID=NUSB_RHOPS Length = 174 Score = 131 bits (331), Expect = 7e-30, Method: Composition-based stats. Identities = 44/148 (29%), Positives = 73/148 (49%), Gaps = 11/148 (7%) Query: 2 KPAARR-RARECAVQALYSWQLSQNDIADVEYQF--------LAEQDVKDVDVLYFRELL 52 + A RR AR AVQALY + I D +F + + +FR+++ Sbjct: 24 RKANRRGAARLAAVQALYQMDIGGAGIDDTFAEFESHWIGNEVEGDQYLPAEAAFFRDIV 83 Query: 53 AGVATNTAYLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIEL 110 +GV + LD L+ L+ L + + +AV+R YEL R D+P +V ++E +++ Sbjct: 84 SGVVRDQTKLDPLIDEALAKGWPLARIDAIIRAVMRAGAYELEHRKDIPARVVVSEYVDV 143 Query: 111 AKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 A +F +D VN VLD+ A R ++ Sbjct: 144 AHAFVEKDETGMVNAVLDQIARQFRADE 171 >UniRef50_B0K9D9 N utilization substance protein B homolog n=10 Tax=Thermoanaerobacterales RepID=NUSB_THEP3 Length = 140 Score = 131 bits (330), Expect = 7e-30, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 67/136 (49%), Gaps = 3/136 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 R ARE V+ LY + +S+ I+ + F E+D Y + G + +D Sbjct: 1 MNRTEAREWVVKMLYQYDVSRLPISKILENFYKEKD-PGEQKEYIENTVIGAIEHLEEID 59 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ Y L + +++ A+LR ++YE+ ++P ++INEA+E+AK + EDS F Sbjct: 60 KEIERYSQNWALNRMPKIDLAILRCSIYEMQY-GNIPVNISINEAVEIAKKYSTEDSPAF 118 Query: 123 VNGVLDKAAPVIRPNK 138 +NG+L + Sbjct: 119 INGLLGAFVRDEGLEE 134 >UniRef50_Q30YL1 N utilization substance protein B homolog n=5 Tax=Desulfovibrionales RepID=NUSB_DESDG Length = 154 Score = 131 bits (330), Expect = 7e-30, Method: Composition-based stats. Identities = 54/141 (38%), Positives = 80/141 (56%), Gaps = 7/141 (4%) Query: 4 AARRRARECAVQALYSWQLSQN-DIADVEYQFLAEQDVKDVD-----VLYFRELLAGVAT 57 ++RR +R A Q LY S D+A ++ + A DV D V + EL+ G T Sbjct: 8 SSRRSSRALAFQVLYGLNFSPAKDLAQLQEAYCASPDVSDRGGEAHPVGFAWELIEGTWT 67 Query: 58 NTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 N LD ++ + +E +G++E +LR+A+YE+ R+DVP KVAINE IEL+K FG Sbjct: 68 NQKALDEIITRFAQNWRVERIGKIELTILRLAVYEMLYRADVPPKVAINEGIELSKQFGD 127 Query: 117 EDSHKFVNGVLDKAAPVIRPN 137 + S F+NG+LD AA + Sbjct: 128 DKSRNFINGILDAAAKALEAG 148 >UniRef50_Q0AXL7 Putative uncharacterized protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AXL7_SYNWW Length = 456 Score = 131 bits (330), Expect = 8e-30, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 53/131 (40%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 +AR A + +Y + L D+ D E++ G +LD +++ Sbjct: 11 KARIMAAEIVYEVMERGAFANLALAKALRNSDLSAADRHLLTEIVNGTVRMIKHLDWVLE 70 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 +L +++ ++LR ALY+L + VP +N+A+E+++ N VL Sbjct: 71 LFLHSPIKKQNPYLLSILRTALYQLMFLAKVPDYALVNDAVEISRQKMGAKMAGVSNAVL 130 Query: 128 DKAAPVIRPNK 138 + K Sbjct: 131 RNIIRKLDKIK 141 >UniRef50_A6CAX2 Transcription antitermination protein NusB n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CAX2_9PLAN Length = 171 Score = 131 bits (330), Expect = 8e-30, Method: Composition-based stats. Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 2/131 (1%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R++AR VQ LY L+ + + + + E + EL GV LD Sbjct: 4 RKQARFLVVQMLYQIDLNPDISINEIREMIEEHGRNKTARTFAWELFTGVMEFKQQLDEH 63 Query: 66 MKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + L+ + ++ +LR+ YEL +D P V I+EA+ELA+ FG+ S +FVN Sbjct: 64 IVRVAENWTLKRMAVTDRNILRLGTYELLH-TDTPPAVVIDEAVELAREFGSAHSSQFVN 122 Query: 125 GVLDKAAPVIR 135 G+LDK Sbjct: 123 GILDKVVQRKD 133 >UniRef50_UPI00016C01E8 sun protein n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C01E8 Length = 229 Score = 130 bits (329), Expect = 1e-29, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 57/132 (43%), Gaps = 7/132 (5%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK RE V AL + + V + L ++ D E+ G Sbjct: 1 MKHL-----REIVVDALVKVEKEGAYLQLVLKKDLEI--LESRDRGLATEIATGTLKYQI 53 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D ++ S + ++ + ++RI++Y+L VP AINEA++LAKS G Sbjct: 54 AIDYIINQVSSIKVSKMKPFIRNLMRISVYQLRYLDKVPAHAAINEAVKLAKSRGFAGLS 113 Query: 121 KFVNGVLDKAAP 132 KFVNGVL Sbjct: 114 KFVNGVLRSIER 125 >UniRef50_B2IXU2 Sun protein n=1 Tax=Nostoc punctiforme PCC 73102 RepID=B2IXU2_NOSP7 Length = 487 Score = 130 bits (329), Expect = 1e-29, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 49/127 (38%), Gaps = 1/127 (0%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLM 66 R+ A AL + L + ++ D D EL+ G LD L+ Sbjct: 2 TNPRQLAFIALRDVH-KGAYADVALDRVLQKVNLPDRDRRLVTELVYGSVRRQRTLDTLI 60 Query: 67 KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGV 126 + + Q + +L + Y+L + +P A+N ++LAK G FVNG+ Sbjct: 61 DQFAKNKSHQQPQDLRTILHLGFYQLRYQERIPASAAVNTTVQLAKENGFSGLTGFVNGL 120 Query: 127 LDKAAPV 133 L + Sbjct: 121 LRQYLRK 127 >UniRef50_A9KM96 Sun protein n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KM96_CLOPH Length = 453 Score = 130 bits (329), Expect = 1e-29, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 1/130 (0%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQ-DVKDVDVLYFRELLAGVATNTAYLDGLM 66 ARE + + V + L D+ D + L GV LD + Sbjct: 2 NAREIVLTMCLKINEDKLPSHVVINETLKNYKDLSKQDRAFISRLCLGVLEQKLRLDYDL 61 Query: 67 KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGV 126 + + ++++ V + VLRIA Y++ +P A +EA++L K G FVNG+ Sbjct: 62 ERFSKIKVKKMKPVIRNVLRIAAYQIEFMEQIPDSAACDEAVKLVKKRGLGGLSGFVNGI 121 Query: 127 LDKAAPVIRP 136 L + + Sbjct: 122 LRNLSREFQK 131 >UniRef50_A9ET18 N utilization substance protein B homolog n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=NUSB_SORC5 Length = 140 Score = 130 bits (328), Expect = 1e-29, Method: Composition-based stats. Identities = 46/132 (34%), Positives = 73/132 (55%), Gaps = 1/132 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 AR RE A+Q L++ + + V F E Y E++ GVA + A +D Sbjct: 2 GARSTGREAALQMLFAVEAGGSSAPRVVATFWRETPGDPEGRAYADEVVVGVAEDLAAVD 61 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ + LE + +V++ VLR+ +EL R +VP V ++EA+ELAK +G+E+S F Sbjct: 62 EAIRKASTNWRLERMARVDRNVLRLGAWELMNRPEVPRAVILDEAVELAKRYGSEESGAF 121 Query: 123 VNGVLDKAAPVI 134 VNGVLD+ A + Sbjct: 122 VNGVLDRIAENL 133 >UniRef50_UPI0001C42A93 transcription antitermination protein NusB n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42A93 Length = 135 Score = 130 bits (328), Expect = 1e-29, Method: Composition-based stats. Identities = 45/137 (32%), Positives = 75/137 (54%), Gaps = 4/137 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 RR AR A QALY L+ +++ L + + +F +L+ G +D Sbjct: 1 MNRRLARLRAAQALYQMDLTGSEMESAIESVLED---NEKQSEFFTQLVQGTTELKTKID 57 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + L + +G V++A++R+A+YE+ + D+P V NEAIELAK+FG E++ +F Sbjct: 58 ETISANLEGWTISRMGHVDRAIIRMAMYEMLEVEDIPVNVTFNEAIELAKAFGGEEAGRF 117 Query: 123 VNGVLDKAAPVIRPNKK 139 VNGVL K+ + ++K Sbjct: 118 VNGVLSKSIETLNLDRK 134 >UniRef50_B1LAQ8 N utilization substance protein B homolog n=10 Tax=Thermotogaceae RepID=NUSB_THESQ Length = 142 Score = 130 bits (328), Expect = 1e-29, Method: Composition-based stats. Identities = 51/141 (36%), Positives = 74/141 (52%), Gaps = 4/141 (2%) Query: 1 MKPAARRRARECAVQALYSWQLS-QNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNT 59 MK RRR R +AL+ + D+ + + L E R + G+ N Sbjct: 1 MKT-PRRRMRLAVFKALFQHEFRRDEDLEQILEEILDET-YDKKAKEDARRYIRGIKENL 58 Query: 60 AYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 +D L+ YL + L L V++ VLR+A YEL D+P +V I+EAIE+AK +G E+ Sbjct: 59 PMIDNLISRYLEKWSLNRLSAVDRNVLRLATYELLFEKDIPIEVTIDEAIEIAKRYGTEN 118 Query: 119 SHKFVNGVLDKAAPVIRPNKK 139 S KFVNG+LD+ A P +K Sbjct: 119 SGKFVNGILDRIAKEHAPKEK 139 >UniRef50_B1H071 Transcription antitermination factor NusB n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1H071_UNCTG Length = 142 Score = 130 bits (328), Expect = 1e-29, Method: Composition-based stats. Identities = 41/130 (31%), Positives = 70/130 (53%), Gaps = 1/130 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 RR+AREC++ LY+ I + F + ++ +L GV N LD Sbjct: 2 GTRRKARECSLHMLYAVDNCNVPIESIYNSFAVYFPKGEAYRMFALDLFKGVCDNKEDLD 61 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 L+K +E + V++ ++R+A YE+ +++P +V I+EA+E++K + +DS KF Sbjct: 62 SLIKQCAKNWEIERMAAVDRNIIRLATYEIMATTNIPIRVIIDEAVEISKKYSTKDSSKF 121 Query: 123 VNGVLDKAAP 132 VNG+LDK Sbjct: 122 VNGILDKLKK 131 >UniRef50_A8ZUK3 Sun protein n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZUK3_DESOH Length = 468 Score = 130 bits (328), Expect = 1e-29, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 3/134 (2%) Query: 2 KPAARRRA--RECAVQALYSWQLSQNDIADVEYQFLAEQDVKD-VDVLYFRELLAGVATN 58 +P A R++ R A++ L + + + V + LA + D L+ GV Sbjct: 12 RPTAARKSDPRAVALRILTALEKGHRTLDQVADEALARVSFPEKRDRALVTTLVYGVLRW 71 Query: 59 TAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 LD + + L+ + +LR+ L++L +P AIN +++L+K G Sbjct: 72 RNTLDYTIVHFSRTPLQRMDPAVLNILRLGLFQLRFLDRIPDFAAINSSVDLSKQAGLGR 131 Query: 119 SHKFVNGVLDKAAP 132 FVNG+L + Sbjct: 132 LSGFVNGLLRSSTR 145 >UniRef50_UPI00016C38F9 Fmu, rRNA SAM-dependent methyltransferase:Nop2p n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C38F9 Length = 465 Score = 130 bits (328), Expect = 1e-29, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 59/124 (47%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR+ A L + A++ + ++ D + +L+ GV LD L+KP Sbjct: 5 ARQVAADVLNRSRSRDGFAAELVDDAVNAANLSPQDRRFVTQLVFGVIRRGGTLDALLKP 64 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 ++ + +LR+ ++L+ + VP A++E +ELA+ GA + FVNGVL Sbjct: 65 FIHLPTHAVQDRVWDLLRLGAFQLTFLTHVPKHAAVHETVELAEHVGAPKAKGFVNGVLR 124 Query: 129 KAAP 132 + A Sbjct: 125 RIAE 128 >UniRef50_D2L8L5 NusB antitermination factor n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L8L5_9DELT Length = 167 Score = 130 bits (328), Expect = 1e-29, Method: Composition-based stats. Identities = 49/142 (34%), Positives = 73/142 (51%), Gaps = 7/142 (4%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAE------QDVKDVDVLYFRELLAGVAT 57 A+RR+AR+ A + LY + A + + EL+ GV Sbjct: 19 ASRRKARKQAFECLYGLIFESAADERSLRRVFARCPHDVMEGEDGAGQAFAWELVQGVWQ 78 Query: 58 NTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 N LD L+ + L + +VE +LR+ALYE+ RSD+P +VA+NEAIELAK +G Sbjct: 79 NQRELDALIVKFSKNWKLSRIAKVELTILRLALYEILHRSDIPLRVALNEAIELAKRYGD 138 Query: 117 EDSHKFVNGVLDKAAPVIRPNK 138 E+S F+NG+LD A + + Sbjct: 139 ENSRNFINGILDAVAKAVDSGE 160 >UniRef50_D2NSI1 tRNA and rRNA cytosine-C5-methylase n=2 Tax=Micrococcaceae RepID=D2NSI1_9MICC Length = 697 Score = 130 bits (328), Expect = 2e-29, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 5/139 (3%) Query: 3 PAARRR----ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATN 58 P+AR R AR + L S S V + + + D + EL G + Sbjct: 193 PSARSRTADTARATVFEVLRSVAESDAYANLVLPKAIRSHRLDHRDAGFATELTYGTLRH 252 Query: 59 TAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 D +++ + R LE++G VLR+ +++L VP A+N+++ LA+ Sbjct: 253 QGTYDAILRHCVDRPLEKVGTTTLIVLRMGVHQLLNM-RVPAHAALNQSVSLAREKIGAG 311 Query: 119 SHKFVNGVLDKAAPVIRPN 137 F+N VL + + Sbjct: 312 PASFINAVLRRVSERTPEE 330 >UniRef50_C9L6W4 Ribosomal RNA small subunit methyltransferase B n=12 Tax=Clostridiales RepID=C9L6W4_RUMHA Length = 454 Score = 130 bits (327), Expect = 2e-29, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 1/130 (0%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNTAYLD 63 + RE + L V L + ++ + + + G LD Sbjct: 3 NKVNLRELVLGILLEINKEGQHSHLVIRSTLEKYQYLEKQERAFLTRVCEGTLEYKLRLD 62 Query: 64 GLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 ++ Y S +E++ V + +LR ++Y+L +VP +EA++LA+ G + FV Sbjct: 63 YILDQYSSVPVEKMKPVIREILRSSVYQLLYMDNVPDSAVCDEAVKLARKKGFYNLTGFV 122 Query: 124 NGVLDKAAPV 133 NGVL K A Sbjct: 123 NGVLRKVARE 132 >UniRef50_Q5WF59 N utilization substance protein B homolog n=2 Tax=Bacillus RepID=NUSB_BACSK Length = 133 Score = 130 bits (327), Expect = 2e-29, Method: Composition-based stats. Identities = 43/127 (33%), Positives = 67/127 (52%), Gaps = 4/127 (3%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 RR AR AVQ LY L ++ L +++ ++ L+ G + +D Sbjct: 1 MNRRVARLRAVQTLYQLTLIDINVDKAIENTLNDEEEPS---EFYNTLVHGTLEHQDEID 57 Query: 64 GLMKPYLSR-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 G + L L+ LG V++A+ R+ L+E+ D+P V +NEAIELAK+FG D+ +F Sbjct: 58 GYLSENLKGYTLDRLGHVDRAIARMGLFEMLYLDDIPVNVTLNEAIELAKAFGGTDAGRF 117 Query: 123 VNGVLDK 129 +NGVL Sbjct: 118 INGVLSN 124 >UniRef50_B0MPP7 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MPP7_9FIRM Length = 439 Score = 130 bits (327), Expect = 2e-29, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 49/135 (36%), Gaps = 5/135 (3%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK AR+ + L + + D D + L GV Sbjct: 1 MKT-----ARQITLDLLIRMDTQGAYSNIILDHAFTQNDADRRDKAFSAALFYGVLERRM 55 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD L++ Y +++ +LR+ Y+L + VP A+NE++ L + + Sbjct: 56 TLDYLIRYYSGIEFDKIKTAVVEILRMGFYQLLFMNSVPDSAAVNESVALCDYCNSTKAK 115 Query: 121 KFVNGVLDKAAPVIR 135 +VN +L + Sbjct: 116 GYVNAILRTFLRNEK 130 >UniRef50_B5JUN2 Transcription antitermination factor NusB n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JUN2_9GAMM Length = 188 Score = 130 bits (327), Expect = 2e-29, Method: Composition-based stats. Identities = 58/145 (40%), Positives = 87/145 (60%), Gaps = 7/145 (4%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAE-------QDVKDVDVLYFRELLAG 54 + ARR+ R+ +QALY + + + QF + D+ VD +F+ L+ Sbjct: 44 RTEARRKTRQRILQALYQCYFNPLPSSKLVQQFYDDEVGEEEGNDMFGVDADFFQAALST 103 Query: 55 VATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 T LD L +L ++ L VE +LR+A++ELS+R DVP +V INEA+ELAKS+ Sbjct: 104 CVDKTEQLDELYCAHLKMPIDRLDPVELCILRLAVFELSERLDVPRRVVINEAVELAKSY 163 Query: 115 GAEDSHKFVNGVLDKAAPVIRPNKK 139 GAED HKF+NGV+DK A +RP+++ Sbjct: 164 GAEDGHKFINGVIDKTARDLRPHEQ 188 >UniRef50_B3QJK9 N utilization substance protein B homolog n=9 Tax=Alphaproteobacteria RepID=NUSB_RHOPT Length = 174 Score = 129 bits (326), Expect = 2e-29, Method: Composition-based stats. Identities = 43/148 (29%), Positives = 72/148 (48%), Gaps = 11/148 (7%) Query: 2 KPAARR-RARECAVQALYSWQLSQNDIADVEYQF--------LAEQDVKDVDVLYFRELL 52 + A RR AR AVQALY + I + +F + + + +FR+++ Sbjct: 23 RKANRRGAARLAAVQALYQMDIGGAGINETFAEFESFWIGNEVEGEQYLPAEAAFFRDIV 82 Query: 53 AGVATNTAYLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIEL 110 AGV +D L+ L+ L + + +AV+R YEL R D+P +V ++E +++ Sbjct: 83 AGVVREQKQIDPLIDDLLARGWPLARIDAILRAVMRAGAYELEHRKDIPARVVVSEYVDV 142 Query: 111 AKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 A +F +D VN VLD+ A R + Sbjct: 143 AHAFVEKDETGMVNAVLDQIARRFRAEE 170 >UniRef50_B2S4Q2 N utilization substance protein B homolog n=3 Tax=Treponema RepID=NUSB_TREPS Length = 141 Score = 129 bits (326), Expect = 2e-29, Method: Composition-based stats. Identities = 44/130 (33%), Positives = 66/130 (50%), Gaps = 3/130 (2%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFL--AEQDVKDVDVLYFRELLAGVATNTAYLD 63 RRRAR A QAL++W + + D+ + R L G + +D Sbjct: 10 RRRARILAFQALFAWDAAGITPETLTQFTWLRRNPPPSTQDLGFSRLLFLGTLEHLREID 69 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 G + L L +V+KA+LR++ Y L + D+P V I+EA+ +A+ FG +DS +F Sbjct: 70 GCVSSRLEHWDFVRLNKVDKAILRLSAYSLLFQKDIPPVVVIHEAVSIARDFGTDDSFRF 129 Query: 123 VNGVLDKAAP 132 VNGVLD A Sbjct: 130 VNGVLDNIAK 139 >UniRef50_Q2JK83 Ribosomal RNA small subunit methyltransferase B n=1 Tax=Synechococcus sp. JA-2-3B'a(2-13) RepID=Q2JK83_SYNJB Length = 457 Score = 129 bits (326), Expect = 2e-29, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 1/133 (0%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 AR+ A+ AL + V LA + D EL+ G+ LD L+ Sbjct: 2 NARQLALLALQKIERQNAYADLVLGHLLANSSLIPADRHLVSELVYGITRRRRTLDALID 61 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 R + + +L + LY+L+ +P AI+ ++ELA+ G VNG+L Sbjct: 62 CLAQRPAHKQPPDLRLILHLGLYQLAFLDQIPASAAIHTSVELARQMGLGSLTGVVNGIL 121 Query: 128 DKAAPV-IRPNKK 139 + +K Sbjct: 122 RAYQRQVLDQPEK 134 >UniRef50_B5ELV9 NusB antitermination factor n=3 Tax=Acidithiobacillus RepID=B5ELV9_ACIF5 Length = 147 Score = 129 bits (326), Expect = 2e-29, Method: Composition-based stats. Identities = 60/141 (42%), Positives = 85/141 (60%), Gaps = 3/141 (2%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNT 59 MK + RR AR+ AVQALY WQ++ A++E QF ++ + ++ DV +F+ L GV Sbjct: 1 MKISRRRLARQAAVQALYQWQMNPGHCAEIELQFTSDPERLQGADVAFFKSLWQGVCAAI 60 Query: 60 AYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 + LD + + R +E+ +VE+A+LR+A EL PY+V INEAIEL K FG E Sbjct: 61 SELDPAIAEEVQDRRWADEVSEVERAILRLAACELRDYPQTPYRVIINEAIELDKDFGGE 120 Query: 118 DSHKFVNGVLDKAAPVIRPNK 138 H+FVN VLDK A R + Sbjct: 121 QGHRFVNAVLDKLAQRWRSAE 141 >UniRef50_B4D6X5 NusB antitermination factor n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6X5_9BACT Length = 151 Score = 129 bits (326), Expect = 3e-29, Method: Composition-based stats. Identities = 48/137 (35%), Positives = 70/137 (51%), Gaps = 6/137 (4%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQ-----DVKDVDVLYFRELLAGVATN 58 RR RE AVQ LY LS + E ++ V ++ +L GV + Sbjct: 2 GKRREGREAAVQYLYQIDLSGETPVNAEQFWMLRSGPGKAPVAPKTRIFAEQLALGVRKH 61 Query: 59 TAYLDGLMKPYLSR-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 +DG +K Y + L+ L V++ +LR+A+YEL DV + INEAIE+AK FG + Sbjct: 62 LEEIDGYIKKYTANYELDRLAVVDRNILRVAIYELLHSPDVAPVIIINEAIEVAKKFGTD 121 Query: 118 DSHKFVNGVLDKAAPVI 134 S FVNG+LD+ + Sbjct: 122 KSGGFVNGILDRIKEEV 138 >UniRef50_B7IXH3 N utilization substance protein B homolog n=82 Tax=Bacillales RepID=NUSB_BACC2 Length = 130 Score = 129 bits (325), Expect = 3e-29, Method: Composition-based stats. Identities = 44/129 (34%), Positives = 72/129 (55%), Gaps = 5/129 (3%) Query: 4 AARRRARECAVQALYSWQLSQN-DIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 RR ARE A+QALY ++ + L E + + + L+ G N + Sbjct: 1 MKRRTARERAMQALYQMDITGELEPKVAVENTLDEGEETN---EFLESLVVGFVENKEAI 57 Query: 63 DGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D ++ L + LE + V++++LR+A+YE+ ++P+ V INEAIE+AK+FG E+S + Sbjct: 58 DEAIRQNLKKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIEIAKTFGDEESRR 117 Query: 122 FVNGVLDKA 130 F+NGVL Sbjct: 118 FINGVLSNI 126 >UniRef50_Q7A601 SA1060 protein n=63 Tax=Staphylococcaceae RepID=Q7A601_STAAN Length = 461 Score = 129 bits (325), Expect = 3e-29, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 3/125 (2%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 R A + + L+E ++ +D F E++ G LD +K Sbjct: 30 NVRSLAFDTIQDILNEGAYSNLRINEVLSENELNAMDKALFTEIVYGTVKRKYTLDFYLK 89 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 P++ ++ + +L +++Y+ VP INEA+E+AK G + VNG+L Sbjct: 90 PFVKTKIK---AWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGIL 146 Query: 128 DKAAP 132 Sbjct: 147 RTMMR 151 >UniRef50_B9L730 Transcription antitermination factor NusB n=2 Tax=Nautiliaceae RepID=B9L730_NAUPA Length = 136 Score = 129 bits (325), Expect = 3e-29, Method: Composition-based stats. Identities = 40/133 (30%), Positives = 78/133 (58%), Gaps = 2/133 (1%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLM 66 ARE +Q LY+ ++ + + + L ++ VK + ++LL GV+ + +D ++ Sbjct: 5 THAREAVIQTLYAQEMGNDQAIEQFDEILKDKKVKGSKAEFAKKLLKGVSEHIDKIDEII 64 Query: 67 KPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 K +L E L +V+K +LR+ +YE+ +D PY++ I+EA+++AK+F + + F+NG Sbjct: 65 KNHLIDWDFERLDKVDKQILRVGIYEILY-TDTPYQIVIDEAVKIAKNFSEDKAKSFING 123 Query: 126 VLDKAAPVIRPNK 138 +LD+ A N+ Sbjct: 124 ILDRVAKEKMSNE 136 >UniRef50_Q6AP93 N utilization substance protein B homolog n=1 Tax=Desulfotalea psychrophila RepID=NUSB_DESPS Length = 141 Score = 129 bits (325), Expect = 3e-29, Method: Composition-based stats. Identities = 45/132 (34%), Positives = 68/132 (51%), Gaps = 7/132 (5%) Query: 6 RRRARECAVQALYSWQLSQNDIA------DVEYQFLAEQDVKDVDVLYFRELLAGVATNT 59 RR ARE A+Q LY + QF V Y L+AGV + Sbjct: 4 RRFAREAALQFLYQDDFIPESADTPGELKERFEQFCEIYQVNKKGRTYALNLIAGVLADQ 63 Query: 60 AYLDGLMKPY-LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 +D L++ ++ + + ++ +LR+A +E++ DVP +VAINEA+E+AK F ++ Sbjct: 64 EAIDRLIEEAAVNWRMSRISATDRNLLRVATFEINFCDDVPAEVAINEAVEIAKRFCGDE 123 Query: 119 SHKFVNGVLDKA 130 S KFVNGVLD Sbjct: 124 SPKFVNGVLDAV 135 >UniRef50_C8PMR7 Transcription antitermination factor NusB n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PMR7_9SPIO Length = 147 Score = 129 bits (325), Expect = 3e-29, Method: Composition-based stats. Identities = 45/132 (34%), Positives = 66/132 (50%), Gaps = 4/132 (3%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAE---QDVKDVDVLYFRELLAGVATNTAYL 62 RRR R A QALY+W D+ E +++ D D L+ + L G + + Sbjct: 5 RRRGRILAFQALYAWDAGSLSPDDLLPFPWVERTGKELHDEDFLFSQLLFLGAVEHIDEI 64 Query: 63 DGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 DGL+ L L V+KA+LR+ Y L + D ++ INEA+ +A+ +G +DS K Sbjct: 65 DGLIAKNLENWDFNRLKLVDKAILRLGTYSLLFQQDTDPRIVINEAVTIARIYGTDDSFK 124 Query: 122 FVNGVLDKAAPV 133 FVN VLD Sbjct: 125 FVNAVLDSIKRE 136 >UniRef50_A8ST69 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A8ST69_9FIRM Length = 452 Score = 128 bits (324), Expect = 4e-29, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 46/132 (34%), Gaps = 1/132 (0%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNTAYLDGL 65 + RE + L + + L + D Y ++ GV LD + Sbjct: 3 KNTREVVLSILLDIEKNHTFSNTALGTALRANQFMSKQDRAYITRMVEGVTEKRMRLDYI 62 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 + + + + + + VLR+ YE+ V A N ++LA G FVNG Sbjct: 63 VNQFSKTKINKCKPLIRCVLRMGTYEIFYMDSVQDHTACNLCVKLAADHGFGSLRGFVNG 122 Query: 126 VLDKAAPVIRPN 137 VL A Sbjct: 123 VLRNIARNKDSI 134 >UniRef50_D0LLT9 Sun protein n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LLT9_HALO1 Length = 501 Score = 128 bits (324), Expect = 4e-29, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 45/128 (35%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 R+ A + L L + D EL G LD + Sbjct: 44 VRDVAHRVLRQVAKEGAFATLALGAALKSSGLDARDRALVTELCYGSLRQQMRLDRALAA 103 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 R L +L ++LR+A YE+ VP ++N A+ A+ G + F NGVL Sbjct: 104 LTPRGLGKLDAATLSILRVAAYEILFLERVPAHASVNSAVRAARRLGGQRFAGFANGVLR 163 Query: 129 KAAPVIRP 136 A P Sbjct: 164 TLAREGEP 171 >UniRef50_C6CU26 NusB antitermination factor n=3 Tax=Bacillales RepID=C6CU26_PAESJ Length = 153 Score = 128 bits (324), Expect = 4e-29, Method: Composition-based stats. Identities = 55/145 (37%), Positives = 81/145 (55%), Gaps = 11/145 (7%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVL----------YFRELLA 53 RR ARE AV +LY ++++ + + E ++ Y REL+ Sbjct: 1 MKRRLAREIAVSSLYQLEMNEVTPMEAVDMLMEEARSENEIEAEFVENDQTDNYVRELVN 60 Query: 54 GVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAK 112 GVA N A +D ++ YL+ ++ L +V++ +LR+A +E++ R+DVP K AINEAIELAK Sbjct: 61 GVAENKAAIDERLQHYLTGWQVDRLSRVDRQILRLAYFEIAYRNDVPPKAAINEAIELAK 120 Query: 113 SFGAEDSHKFVNGVLDKAAPVIRPN 137 FG E+S KFVNGVL K Sbjct: 121 HFGTEESGKFVNGVLGKLLKEREGE 145 >UniRef50_B5GBK3 RNA-binding Sun protein n=1 Tax=Streptomyces sp. SPB74 RepID=B5GBK3_9ACTO Length = 402 Score = 128 bits (324), Expect = 4e-29, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 47/129 (36%), Gaps = 5/129 (3%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQD----VKDVDVLYFRELLAGVATNTAYLDG 64 R A AL + V L E D EL+ G D Sbjct: 127 VRVLAFDALRAVDERDAYANLVLPALLREAREKGGFDARDAALATELVYGTLRGRGTYDA 186 Query: 65 LMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 ++ + R L E+ VL + ++L + +P A++ +ELA+ + +FVN Sbjct: 187 VIAACVDRPLREVDPPVLDVLSLGAHQLLG-TRIPTHAAVSATVELARVVLGDGRSRFVN 245 Query: 125 GVLDKAAPV 133 VL + A Sbjct: 246 AVLRRIARN 254 >UniRef50_B0KA07 Sun protein n=11 Tax=Thermoanaerobacterales RepID=B0KA07_THEP3 Length = 444 Score = 128 bits (323), Expect = 5e-29, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 55/135 (40%), Gaps = 9/135 (6%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MKP RE A + L + + L Q++K++D + +EL+ GV Sbjct: 1 MKP------REIAYKILQEVLSKEAYANISFNKHLKGQELKEIDRGFTKELVFGVIERKY 54 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD ++ ++ + + + L + LY+L VP AINE + +AK Sbjct: 55 TLDFILSFFVKKAPDLKTMI---FLEMGLYQLLYMDKVPSYAAINETVNIAKKVLGIKRA 111 Query: 121 KFVNGVLDKAAPVIR 135 F+N VL Sbjct: 112 NFINAVLRNYDREKE 126 >UniRef50_Q2LRX5 16S rRNA m(5)C 967 methyltransferase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LRX5_SYNAS Length = 471 Score = 128 bits (322), Expect = 6e-29, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 49/130 (37%), Gaps = 2/130 (1%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDV-DVLYFRELLAGVATNTAYLDGLMKP 68 R AV+ L + + FL + + D L+ G LD +++ Sbjct: 25 RSLAVEILDRIDTTGAFAEPLLDAFLRDHLLDSAPDRHLLTSLVYGTLRMRGRLDWIIQQ 84 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 + + +LR ALY+ +P ++EA+ELAK K VN +L Sbjct: 85 LYQGRFSSMQGGIRNILRTALYQFLFMERIPAFALVDEAVELAK-LRYPGREKLVNALLR 143 Query: 129 KAAPVIRPNK 138 A + N+ Sbjct: 144 NAVRKVSANE 153 >UniRef50_A0LI21 N utilization substance protein B homolog n=4 Tax=Deltaproteobacteria RepID=NUSB_SYNFM Length = 151 Score = 128 bits (322), Expect = 6e-29, Method: Composition-based stats. Identities = 44/143 (30%), Positives = 77/143 (53%), Gaps = 7/143 (4%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKD------VDVLYFRELLAGVAT 57 RRR+RE A+Q LY +++ + + D + + E++ GV+ Sbjct: 2 GRRRRSREMALQVLYQMEMAVLPPEEALGLYYQLFDDDEKHRVPAEVRPFAEEIVRGVSL 61 Query: 58 NTAYLDGLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 + A +D ++ L + V++ +LRIA++E+ D+P KV+INEAI+L K+FG+ Sbjct: 62 HRARIDEMITSASEHWRLARMSLVDRNILRIAVFEMLFCFDIPPKVSINEAIDLGKTFGS 121 Query: 117 EDSHKFVNGVLDKAAPVIRPNKK 139 DS F+NG+LD P++ N + Sbjct: 122 PDSGAFINGILDHILPLLEANGR 144 >UniRef50_C5S6Y6 NusB antitermination factor n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S6Y6_CHRVI Length = 171 Score = 128 bits (322), Expect = 6e-29, Method: Composition-based stats. Identities = 49/154 (31%), Positives = 76/154 (49%), Gaps = 22/154 (14%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQ-----------------DVKDVDV 45 + R ++R A ALY W+L+ +D ++ L + ++ D Sbjct: 10 ISPRSQSRRYAALALYQWRLTGDDPMAIKRHLLDDPKWLDAVAASLNGVSDEDELAAEDR 69 Query: 46 -----LYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPY 100 ELL GV T+ +D + +L R + ++ VE A+LR+ YE+ ++P Sbjct: 70 FNFNVELLDELLNGVPTHIDAIDAQLDRFLDRPISQVDPVELAILRLGAYEILFSDNIPD 129 Query: 101 KVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVI 134 +VAINEA+EL K GA + HK+VNGVLDK A Sbjct: 130 RVAINEAVELTKLLGAHEGHKYVNGVLDKIARRK 163 >UniRef50_Q5F9Y0 N utilization substance protein B homolog n=22 Tax=Neisseria RepID=NUSB_NEIG1 Length = 141 Score = 128 bits (322), Expect = 7e-29, Method: Composition-based stats. Identities = 59/138 (42%), Positives = 80/138 (57%), Gaps = 1/138 (0%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK ARRR+RE AVQA+Y +++ ++ D D F +L G TN A Sbjct: 1 MKT-ARRRSRELAVQAVYQSLINRTAAPEIAKNIREMSDFAKADEELFNKLFFGTQTNAA 59 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 ++P L R ++L +E+AVL A +ELS + PY V INEAIE+ K+FG D H Sbjct: 60 DYIQKIRPLLDRDEKDLNPIERAVLLTACHELSAMPETPYPVIINEAIEVTKTFGGTDGH 119 Query: 121 KFVNGVLDKAAPVIRPNK 138 KFVNG+LDK A IRP++ Sbjct: 120 KFVNGILDKLAAQIRPDE 137 >UniRef50_UPI0001BC34B4 sun protein n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=UPI0001BC34B4 Length = 443 Score = 128 bits (322), Expect = 7e-29, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 49/132 (37%), Gaps = 1/132 (0%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNTAYLDGLM 66 R + AL V + L + + ++D + + G LD ++ Sbjct: 6 NTRNIILDALIEINEKDRFTHIVLPEVLKKYQYLDNIDRSFISRTILGTVERKITLDYII 65 Query: 67 KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGV 126 + + ++ V + +LR++ Y+L V NEA+ L+ G FVNGV Sbjct: 66 NLFSKTPVNKMKPVIRNILRMSTYQLIYMEGVKDFAVCNEAVRLSVKKGFTALKGFVNGV 125 Query: 127 LDKAAPVIRPNK 138 L A + Sbjct: 126 LRTIAREKNKIE 137 >UniRef50_B4WR53 Ribosomal RNA small subunit methyltransferase B n=4 Tax=Cyanobacteria RepID=B4WR53_9SYNE Length = 491 Score = 128 bits (322), Expect = 7e-29, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 51/140 (36%), Gaps = 9/140 (6%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQD--------VKDVDVLYFRELLA 53 K A + AR+ A +AL + V + L + D EL+ Sbjct: 31 KTAKPKTARQIAFEALRAIDQ-GAFADVVIDRKLKGTQTGTQLGIQLSSQDKGLVTELVY 89 Query: 54 GVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKS 113 G LD L+ + R + + +LR+ Y+L VP ++ ++LAKS Sbjct: 90 GSVRRRRTLDALIDQFGKRPASKQHRDLLQILRLGFYQLRYLDHVPVHAVVDTTVQLAKS 149 Query: 114 FGAEDSHKFVNGVLDKAAPV 133 VN +L + A Sbjct: 150 QRLGKLSGVVNAMLRQYARE 169 >UniRef50_B1W456 N utilization substance protein B homolog n=7 Tax=Streptomyces RepID=NUSB_STRGG Length = 143 Score = 127 bits (321), Expect = 8e-29, Method: Composition-based stats. Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 5/140 (3%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDV---LYFRELLAGVATNTA 60 AAR +AR+ A Q L+ + V ++ D + EL+ G A Sbjct: 2 AARNKARKRAFQILFEADQRGESVQSVLADWVRLSRTDDRQPPVGEFTMELVEGYAQYAD 61 Query: 61 YLDGLMKPY-LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D L+ Y + ++ + V++++LR+ YEL P V I+EA++LAK F +DS Sbjct: 62 RIDDLIVTYAVDWEIDRMPVVDRSILRLGAYELIWMDGTPDAVVIDEAVQLAKEFSTDDS 121 Query: 120 HKFVNGVLDKAAPVIRPNKK 139 FVNG+L + ++PN + Sbjct: 122 PSFVNGLLARF-KDLKPNLR 140 >UniRef50_A5KNU7 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=A5KNU7_9FIRM Length = 456 Score = 127 bits (321), Expect = 9e-29, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 53/132 (40%), Gaps = 1/132 (0%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNTAYLDGLM 66 RE L + V + L + ++ + + + G + +D ++ Sbjct: 6 NEREIVAAILMEVTENGRYSHIVLREVLTKYQYLEKRERAFITRVTEGTLEHMTEIDYIL 65 Query: 67 KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGV 126 + ++++ + +A+LR A+Y++ +P +E+++LA G +VNGV Sbjct: 66 DCFSKVKVKKMKPLIRAILRSAVYQIKYMDSIPDHAVCSESVKLAVKKGFSGLRGYVNGV 125 Query: 127 LDKAAPVIRPNK 138 L I + Sbjct: 126 LRSVVKGIDEVE 137 >UniRef50_Q2YYB7 N utilization substance protein B homolog n=59 Tax=Staphylococcus RepID=NUSB_STAAB Length = 129 Score = 127 bits (320), Expect = 1e-28, Method: Composition-based stats. Identities = 42/130 (32%), Positives = 69/130 (53%), Gaps = 2/130 (1%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +R+ +R A Q L+ ++ +D+ E + D+D + L++GV + LD Sbjct: 1 MSRKESRVQAFQTLFQLEMKDSDLTINEAISFIKDGNPDLDFEFIHWLVSGVKDHEPVLD 60 Query: 64 GLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + PYL + L + ++ +LR+A YE+ SD P KV +NEA+EL K F +D +KF Sbjct: 61 ETISPYLKDWTIARLLKTDRIILRMATYEILH-SDTPAKVVMNEAVELTKQFSDDDHYKF 119 Query: 123 VNGVLDKAAP 132 +NGVL Sbjct: 120 INGVLSNIKK 129 >UniRef50_Q5P3H4 N utilization substance protein B homolog n=9 Tax=Betaproteobacteria RepID=NUSB_AZOSE Length = 145 Score = 127 bits (320), Expect = 1e-28, Method: Composition-based stats. Identities = 54/128 (42%), Positives = 70/128 (54%) Query: 11 ECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL 70 E A+Q +Y W LS N + +E D F LL G N L P++ Sbjct: 12 EFALQGIYQWLLSANSMLLIEEHVSQVSGFDKADRELFISLLRGTLNNVDDLQAEFAPFI 71 Query: 71 SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 R + EL VE+A+L +A +EL D PY+V INEAIELAKS+G D H+FVNGVLDK Sbjct: 72 HRAVHELSPVERAILLLATHELKHNLDTPYRVIINEAIELAKSYGGTDGHRFVNGVLDKL 131 Query: 131 APVIRPNK 138 A +R + Sbjct: 132 ATQLRVTE 139 >UniRef50_C7MCY2 tRNA/rRNA cytosine-C5-methylase n=2 Tax=Micrococcineae RepID=C7MCY2_BRAFD Length = 551 Score = 127 bits (320), Expect = 1e-28, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 5/136 (3%) Query: 2 KPAARRR----ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVAT 57 +PA R R +R+ A++ L + + V + L V D + EL G Sbjct: 54 RPAERSRRSTPSRQVALEGLRLVREEDSYANLVLPRLLRSHRVSGRDAAFTTELFYGSLR 113 Query: 58 NTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 LD ++ + R LEE+ + VLR+ Y+L V A +E + LA++ Sbjct: 114 AQGRLDAILTACVDRPLEEVDPALRDVLRLGAYQLLDM-SVAPHAATSETVALARAEVGA 172 Query: 118 DSHKFVNGVLDKAAPV 133 FVN VL + Sbjct: 173 GGASFVNAVLRRVGEK 188 >UniRef50_UPI0001745093 NusB antitermination factor n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001745093 Length = 145 Score = 127 bits (320), Expect = 1e-28, Method: Composition-based stats. Identities = 43/136 (31%), Positives = 66/136 (48%), Gaps = 2/136 (1%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 M RR R+ A+Q L++ + F + L+ G+ T+ Sbjct: 1 MAIGKRREGRQAAMQFLFAHDVHGKVEDTDRAAFWTLHSATQDIRAHAESLVTGIKTHQV 60 Query: 61 YLDGLMKPYLSR-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D + L E LG V++ +LR+A+YE+ ++VP V INEA+E++K FG + Sbjct: 61 QIDDCIAATLENFRFERLGVVDRNILRLAVYEMLH-TEVPVPVVINEAVEISKVFGDTQT 119 Query: 120 HKFVNGVLDKAAPVIR 135 FVNGVLDK A I Sbjct: 120 RAFVNGVLDKIAKRIP 135 >UniRef50_Q1IIS1 Sun protein n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IIS1_ACIBL Length = 432 Score = 127 bits (320), Expect = 1e-28, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 1/134 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 ++ +R A L + Q +++ D+ D EL+ G + LD Sbjct: 1 MSKNPSRATAFDILLRVERDQAFASELL-HSDRLNDLSAPDRGLATELVMGTLRWQSTLD 59 Query: 64 GLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 L+ S+ L +L LR+A Y+L +P A+NE++EL K + F Sbjct: 60 ALVATQSSQPLRKLDIEVLIALRLAAYQLQFLDRIPANAAVNESVELVKRARKRSAVPFA 119 Query: 124 NGVLDKAAPVIRPN 137 N VL K + + R Sbjct: 120 NAVLRKISKLPREI 133 >UniRef50_B0PFT6 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PFT6_9FIRM Length = 450 Score = 127 bits (320), Expect = 1e-28, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 52/136 (38%), Gaps = 4/136 (2%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK AR A QAL + + + + + + + L V Sbjct: 25 MKK----DARYTAAQALLRMESAGAYSNLTIDSLIEKNGLDAREGAFAAALFYTVLERRL 80 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D ++ Y +R L L + LR+ + +L V A++E++ L ++ G + Sbjct: 81 TIDHVLAAYCARGLASLSKPVLQTLRLGVCQLVWMDGVDDYAAVSESVNLTRALGCAKAS 140 Query: 121 KFVNGVLDKAAPVIRP 136 FVNGVL + Sbjct: 141 GFVNGVLRAFLRADKA 156 >UniRef50_B9LDT2 N utilization substance protein B homolog n=6 Tax=Chloroflexi (class) RepID=NUSB_CHLSY Length = 151 Score = 127 bits (319), Expect = 1e-28, Method: Composition-based stats. Identities = 45/131 (34%), Positives = 72/131 (54%), Gaps = 3/131 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 + R R R A+Q L+ + + I V + L ++ + + R L+ G + +YLD Sbjct: 8 SQRHRVRIAALQILFEVDETDHAIDQVLERRLTDEPMSQESAEFLRRLVFGAWEHRSYLD 67 Query: 64 GLMKPYL-SRLLEELGQVEKAVLRIALYELSKRS--DVPYKVAINEAIELAKSFGAEDSH 120 +++ + + ++ V+KAVLRIAL+EL P K INEA+ELAK FG+++S Sbjct: 68 RIIEEAAPNWPVAQMPGVDKAVLRIALFELLIDDVERTPIKAVINEAVELAKQFGSDNSS 127 Query: 121 KFVNGVLDKAA 131 +FVNGVL Sbjct: 128 RFVNGVLGTVV 138 >UniRef50_B2KE32 N utilization substance protein B homolog n=1 Tax=Elusimicrobium minutum Pei191 RepID=NUSB_ELUMP Length = 140 Score = 127 bits (319), Expect = 2e-28, Method: Composition-based stats. Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 7/139 (5%) Query: 4 AARRRARECAVQALYSWQLS---QNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 RR ARE A+Q LY DI + + F + + ++ G + A Sbjct: 2 GNRRLAREHALQTLYYADTGKTQGKDINEYKEDFKD--SLDAAGFEFCSGIIDGALEHQA 59 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSD-VPYKVAINEAIELAKSFGAED 118 LD ++ Y L + V++++LR+A YE+ + P I+EAIELAK F E+ Sbjct: 60 ELDKIISAYAKNWSLNRMSVVDRSILRMAAYEMLFSPENTPVAAVIDEAIELAKKFSTEN 119 Query: 119 SHKFVNGVLDKAAPVIRPN 137 S +F+NG+LD+ + Sbjct: 120 SSRFINGLLDQIKKERKNG 138 >UniRef50_Q6MNX9 N utilization substance protein B homolog n=1 Tax=Bdellovibrio bacteriovorus RepID=NUSB_BDEBA Length = 135 Score = 127 bits (319), Expect = 2e-28, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 72/134 (53%), Gaps = 3/134 (2%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK ARR+ARE A+Q L+ + + + + + + Y ++ GV +N Sbjct: 1 MKLTARRQARELALQVLFQTEFAPQISYQTFLEVFEQS-LDPEVITYADLIVTGVKSNKE 59 Query: 61 YLDGLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSD-VPYKVAINEAIELAKSFGAED 118 +D ++ +E + +++ +LRIA+YE+ +D + +AINEA+E+AK +G D Sbjct: 60 AIDSKIQASSAHWKVERMATIDRNILRIAVYEMRFAADPIKENIAINEAVEIAKKYGTSD 119 Query: 119 SHKFVNGVLDKAAP 132 S FVNG+LD+ Sbjct: 120 SGSFVNGLLDQVGK 133 >UniRef50_Q31J86 Ribosomal RNA small subunit methyltransferase B n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31J86_THICR Length = 436 Score = 127 bits (319), Expect = 2e-28, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 49/130 (37%), Gaps = 2/130 (1%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 +R A++ + ++ + LA+ + + + L+ G L+ + Sbjct: 4 NSRYIALKICLTVIEHGRSLSQSLAEGLAQFS-DRRERAFTQNLVLGTLRWQERLEAIRS 62 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 L + L+ + ++ + LY++ D P A++E + L KS + +NGVL Sbjct: 63 HLLKKPLKAKDEDVNQLILLGLYQILYM-DTPEHAAVSETVNLTKSLKKPWARGLINGVL 121 Query: 128 DKAAPVIRPN 137 Sbjct: 122 RTFLRDKDSI 131 >UniRef50_D2B6M0 Fmu, rRNA SAM-dependent methyltransferase:Nop2p n=2 Tax=Actinomycetales RepID=D2B6M0_STRRD Length = 515 Score = 127 bits (319), Expect = 2e-28, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 50/134 (37%), Gaps = 3/134 (2%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R AR A L + + L E+ + D EL G D + Sbjct: 53 RDEARNAAYDLLRAVDERDAYANLLMPALLRERRLSGRDAGLATELAYGTLRGLGTYDEV 112 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 + R E+L +R+ +++L K + VP A+ ++L + + K+ N Sbjct: 113 IAACSDRAPEDLDPPLLDAIRLGVHQLLK-TRVPPHAAVGTTVDLVRLRVGTGASKYANA 171 Query: 126 VLDKAAPVIRPNKK 139 VL K A R ++ Sbjct: 172 VLRKVA--GRSLEQ 183 >UniRef50_Q0TPD3 N utilization substance protein B homolog n=10 Tax=Clostridium RepID=NUSB_CLOP1 Length = 135 Score = 126 bits (318), Expect = 2e-28, Method: Composition-based stats. Identities = 44/135 (32%), Positives = 72/135 (53%), Gaps = 3/135 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDV--KDVDVLYFRELLAGVATNTAY 61 R ++RE +Q Y +++ + F+ +D+ D+D+ Y + L G+ N Sbjct: 1 MNRVKSREYLLQLAYQMEITSETALETFNSFMENEDISKDDLDLAYIKSGLLGIEENKEK 60 Query: 62 LDGLMK-PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD L++ + L + +V ++LRI+ YE+ DVP KV+INEAIEL K + S Sbjct: 61 LDSLIESQLVKWKLNRISKVNLSILRISTYEILFAEDVPGKVSINEAIELCKKYSDNKSV 120 Query: 121 KFVNGVLDKAAPVIR 135 F+NGVLDK ++ Sbjct: 121 SFINGVLDKVYKNMQ 135 >UniRef50_C5NYN0 Ribosomal RNA small subunit methyltransferase B n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NYN0_9BACL Length = 441 Score = 126 bits (318), Expect = 2e-28, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 3/126 (2%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 AR A + LY+ ++ + V++ D + E++ G N YL+ ++K Sbjct: 5 NARHIAYEVLYTIIQEDGYSNITLNKYFNQYKVEEQDKRFISEVVYGSIKNKLYLEHILK 64 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 Y ++ K +L +++Y+L P I+EA++L K + KFVNG+L Sbjct: 65 SYSKGRVK---PKVKVILLMSIYQLLYMDKTPNFAVIDEAVKLGKKIAGNITGKFVNGIL 121 Query: 128 DKAAPV 133 Sbjct: 122 RNIERN 127 >UniRef50_A5VKQ4 Sun protein n=14 Tax=Lactobacillus RepID=A5VKQ4_LACRD Length = 449 Score = 126 bits (318), Expect = 2e-28, Method: Composition-based stats. Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 3/140 (2%) Query: 1 MKPA-ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNT 59 MK + ARE A+ AL + Q L + + D D ++ GV + Sbjct: 1 MKTKFQPQNARELALVALEGVVENGAYSNLQVDQLLKKYPLADKDRRLATNIIYGVLQHK 60 Query: 60 AYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 L+ + ++ + L K +L ALY+ VP +E+IE+AK G Sbjct: 61 LTLEYWLNGFIQG--KRLDPWVKTLLLSALYQYHYLERVPDWAVTDESIEIAKRRGNPGI 118 Query: 120 HKFVNGVLDKAAPVIRPNKK 139 KFV GVL P+ + Sbjct: 119 RKFVTGVLHAILRKGLPDLR 138 >UniRef50_B8DTW1 N utilization substance protein B homolog n=16 Tax=Actinobacteridae RepID=NUSB_BIFA0 Length = 154 Score = 126 bits (318), Expect = 2e-28, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 64/134 (47%), Gaps = 1/134 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 AR AR A+ LY D + + +A+ + Y E++ GV + +D Sbjct: 1 MARSTARRRALNTLYEADEKGQDFLSLLDERIAQPGAQTPLPEYAIEIVRGVDEHRRDID 60 Query: 64 GLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + + + ++ + +++ +LRIA +E+ DVP KVAI+EA+ L+K+ + + F Sbjct: 61 SQLNTHSTGWKVKRMHAIDRNILRIATWEILYNDDVPDKVAIDEALNLSKTLSDDAAPSF 120 Query: 123 VNGVLDKAAPVIRP 136 ++GVL Sbjct: 121 IHGVLSAIVAAKDK 134 >UniRef50_B4SCZ7 N utilization substance protein B homolog n=2 Tax=Chlorobium/Pelodictyon group RepID=NUSB_PELPB Length = 171 Score = 126 bits (318), Expect = 2e-28, Method: Composition-based stats. Identities = 46/142 (32%), Positives = 76/142 (53%), Gaps = 4/142 (2%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDV-LYFRELLAGVATNT 59 MK RR+ RE +QALY+ ++ DI L E+ + D + +F LL + + Sbjct: 1 MKTY-RRQIREKILQALYTIEIRDTDIDSAAGWLLTEEILADPNAMKFFNMLLKNIKEHM 59 Query: 60 AYLDGLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF-GAE 117 +D + + + + + ++K ++R+AL E+ D+P KV+INEAIE+AK F + Sbjct: 60 EEIDRYIVKHTFNWDMSRIAIIDKNIIRMALTEILYCEDIPPKVSINEAIEIAKKFNSTD 119 Query: 118 DSHKFVNGVLDKAAPVIRPNKK 139 S KFVNG+LD ++ K Sbjct: 120 KSSKFVNGILDAIFNDLKNEGK 141 >UniRef50_C1QBG1 Transcription antitermination factor NusB n=1 Tax=Brachyspira murdochii DSM 12563 RepID=C1QBG1_9SPIR Length = 187 Score = 126 bits (317), Expect = 3e-28, Method: Composition-based stats. Identities = 43/133 (32%), Positives = 79/133 (59%), Gaps = 4/133 (3%) Query: 4 AARRRARECAVQALYSWQLSQN--DIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 ARR+AR AV +LYS+++++ I ++ F ++ + + + R L+ G N Sbjct: 53 GARRQARIYAVMSLYSYEINERKISINNILD-FDYDKKIPENIFAFTRNLVEGTIKNLER 111 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D L++ Y + ++ + V+K+++R+++Y L D+P V I+EA+E+AK F +DS+ Sbjct: 112 IDSLIEKYSNNWDIKRIQYVDKSIIRMSIYSLIFLKDIPKSVVIDEAVEIAKIFSDKDSY 171 Query: 121 KFVNGVLDKAAPV 133 KFVNG+LD Sbjct: 172 KFVNGILDGIQEE 184 >UniRef50_Q1AW09 N utilization substance protein B homolog n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=NUSB_RUBXD Length = 139 Score = 126 bits (317), Expect = 3e-28, Method: Composition-based stats. Identities = 39/126 (30%), Positives = 65/126 (51%), Gaps = 4/126 (3%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +RR AR+ A LY ++ + + ++ A + + Y ++ GV LD Sbjct: 1 MSRRTARKQAFFILYQSDVTGSPAEPLIGRWRAYRGELE---DYAERVVRGVERERERLD 57 Query: 64 GLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ + + V++ +LR+ALYE+ DVP +VA+NEA+ELAK F E++ F Sbjct: 58 AVLDGVSEGWPVWRMSAVDRTILRLALYEMLHVQDVPPEVAVNEAVELAKGFSGEEAPSF 117 Query: 123 VNGVLD 128 V GVL Sbjct: 118 VGGVLR 123 >UniRef50_B7DR17 NusB antitermination factor n=1 Tax=Alicyclobacillus acidocaldarius LAA1 RepID=B7DR17_9BACL Length = 165 Score = 125 bits (316), Expect = 3e-28, Method: Composition-based stats. Identities = 50/139 (35%), Positives = 75/139 (53%), Gaps = 3/139 (2%) Query: 4 AARRRARECAVQALYSWQ-LSQNDIADVEYQFLAEQDVKDV-DVLYFRELLAGVATNTAY 61 R ARECA+QAL A+ LAE+ + D Y EL+ G + Sbjct: 1 MTRHEARECALQALCVLDVQRDLGSAEAIASVLAERGLDAGGDWAYIEELVDGTRRHLGE 60 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D L+ ++ R E +G+VE+ VLR+A YEL ++P AI+EA+++AK+F E S Sbjct: 61 IDELLARHMERWSPERIGRVERNVLRLATYELLFEPELPIASAIDEAVQIAKTFATEQSG 120 Query: 121 KFVNGVLDKAAPVIRPNKK 139 +FVNGVL K P + ++ Sbjct: 121 RFVNGVLAKLLPAVADRRR 139 >UniRef50_C1ZLP1 Ribosomal RNA small subunit methyltransferase RsmB n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZLP1_PLALI Length = 754 Score = 125 bits (316), Expect = 3e-28, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 1/132 (0%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 M+ A R ARE A L + I +V Q + + D EL+ G+ + Sbjct: 295 MQLLAPRTARELAFNVLEAHHAGNKHIGEVFDQAVDRTTLSPSDRRLAYELICGIVRRQS 354 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 L L+ + R +E L + + +++I LY++ +P A++E +ELAK Sbjct: 355 TLQALLMSLVHRQMETLERPLQTIIKIGLYQIFLCQGIPQHAAVHETVELAKRANLRW-G 413 Query: 121 KFVNGVLDKAAP 132 FVNGVL A Sbjct: 414 GFVNGVLRSAIQ 425 >UniRef50_C0ZC03 N utilization substance protein B n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZC03_BREBN Length = 137 Score = 125 bits (316), Expect = 3e-28, Method: Composition-based stats. Identities = 50/136 (36%), Positives = 71/136 (52%), Gaps = 4/136 (2%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 M RR ARE VQ L+ +++ + D + E + + Y R LL GV N Sbjct: 1 MNGMKRRTAREKVVQCLFQIDMAEVPLTDAVALVMEE---SEENAQYLRYLLDGVLKNLT 57 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D +K YL LE + V++A+LR+A YE+ D P KV +NEAIE+AK F E S Sbjct: 58 EIDAEIKKYLRGWQLERIANVDRAILRLAFYEIMFEQDTPDKVVMNEAIEVAKLFSDEQS 117 Query: 120 HKFVNGVLDKAAPVIR 135 H+++NGVL Sbjct: 118 HRYINGVLSSFLQSRE 133 >UniRef50_A5G3J8 N utilization substance protein B homolog n=7 Tax=Desulfuromonadales RepID=NUSB_GEOUR Length = 145 Score = 125 bits (316), Expect = 3e-28, Method: Composition-based stats. Identities = 49/144 (34%), Positives = 77/144 (53%), Gaps = 9/144 (6%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQ--------DVKDVDVLYFRELLAGV 55 ++RR RE A+QALYS + D V + + D + EL+ GV Sbjct: 2 SSRREGRELALQALYSSDVEVMDGTTVLKRIMENFGDGSEPAVDAHSRSFSFAAELVNGV 61 Query: 56 ATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 N A +D ++ + + +V+ +LR+A++EL R D+P V INEAIE+AK F Sbjct: 62 VANRAAIDQRIEEKSKNWSISRMARVDLNILRLAVFELFYRPDIPKNVTINEAIEVAKKF 121 Query: 115 GAEDSHKFVNGVLDKAAPVIRPNK 138 GA+DS F+NG+LD+ A ++ + Sbjct: 122 GADDSPAFINGILDEIASLLPDKE 145 >UniRef50_B9XT31 Sun protein n=1 Tax=bacterium Ellin514 RepID=B9XT31_9BACT Length = 444 Score = 125 bits (316), Expect = 3e-28, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 56/145 (38%), Gaps = 8/145 (5%) Query: 1 MKPAA------RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAG 54 MK + ++ R+ AV+ L + ++ L+ + D +EL+ G Sbjct: 1 MKTMSLLSVVSEQKPRQIAVRVLTERLSQEEYTENLLEIELSRARLSAPDRGLCQELVYG 60 Query: 55 VATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 + L+ L+ + +L++ LY++ +P A++E +E+AK Sbjct: 61 IVRWQETLNWLIDRKTEGR--RQKPEMQVLLQLGLYQMFWLDRIPNHAAVHETVEIAKEL 118 Query: 115 GAEDSHKFVNGVLDKAAPVIRPNKK 139 G FVN VL +K Sbjct: 119 GFVAQSGFVNAVLRGYLRERVETEK 143 >UniRef50_A1WVG0 N utilization substance protein B homolog n=1 Tax=Halorhodospira halophila SL1 RepID=NUSB_HALHL Length = 155 Score = 125 bits (316), Expect = 3e-28, Method: Composition-based stats. Identities = 59/139 (42%), Positives = 87/139 (62%), Gaps = 6/139 (4%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R RAR VQALY + ++ D+E QFLA + D+DV YFREL+ GV A LD Sbjct: 10 RSRARSKLVQALYQYAVTGASAEDIERQFLA-AGLGDIDVAYFRELIYGVTDRAAELDEQ 68 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 + L R L +L VE+++LR+ +ELS+R +VPY+V I+E++ELA+ FGA+ SH+++NG Sbjct: 69 LSALLDRPLVQLDPVERSILRLGAFELSERLEVPYRVVIDESVELARRFGADQSHRYING 128 Query: 126 VLDKA-----APVIRPNKK 139 VLD+ ++ Sbjct: 129 VLDRFGATVALRAAERGER 147 >UniRef50_B8DJF1 N utilization substance protein B homolog n=2 Tax=Desulfovibrio RepID=NUSB_DESVM Length = 165 Score = 125 bits (316), Expect = 4e-28, Method: Composition-based stats. Identities = 49/154 (31%), Positives = 70/154 (45%), Gaps = 17/154 (11%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFL--------AEQDVKDVDV-------- 45 K RR R A Q LY + + + D Sbjct: 6 KKPTRRSERALAFQVLYGLSFTPATSEGALRAAYAASPDVADRNAEDEKADRQAPATAPQ 65 Query: 46 LYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAI 104 Y E++ GV A LD + + +E +G+VE +LRIA+YE+ R DVP KVA+ Sbjct: 66 GYAWEVIHGVWKTQAELDEAVSGFSQNWRVERMGRVELTLLRIAVYEMLFRDDVPAKVAM 125 Query: 105 NEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 NEAIEL+K FG ++S F+NG+LD A + + Sbjct: 126 NEAIELSKQFGDDNSRGFINGILDAVARAVESGR 159 >UniRef50_UPI0001B583AE RNA-binding Sun protein n=2 Tax=Actinomycetales RepID=UPI0001B583AE Length = 437 Score = 125 bits (316), Expect = 4e-28, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 47/129 (36%), Gaps = 5/129 (3%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQD----VKDVDVLYFRELLAGVATNTAYLDG 64 R A AL + V L E D EL+ G D Sbjct: 28 VRVLAFDALRAVDERDAYANLVLPALLREAREKGGFDARDAALATELVYGTLRGRGTYDA 87 Query: 65 LMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 ++ + R L E+ VL + ++L + +P A++ +ELA+ + +FVN Sbjct: 88 IIAACVDRPLREVDPPVLDVLSLGAHQLLG-TRIPTHAAVSATVELARVVLGDGRSRFVN 146 Query: 125 GVLDKAAPV 133 VL + + Sbjct: 147 AVLRRISRN 155 >UniRef50_A7BCC1 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BCC1_9ACTO Length = 490 Score = 125 bits (316), Expect = 4e-28, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 52/134 (38%), Gaps = 5/134 (3%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQD----VKDVDVLYFRELLAGVATNTAYLDGL 65 R A L+ + + + L + D D + EL+ G LD + Sbjct: 20 RRIAYDVLHEVETQGAFTNIILPKALRQARRDGHFSDRDAAFTSELVHGTLRAIGRLDWV 79 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 + ++ R L +L VLR+ ++L VP A++ +++A+ + +FVN Sbjct: 80 ISRHIDRPLADLDPRALVVLRMGAHQLLDM-RVPDHAAVSATVDVAREHLTDGPVRFVNA 138 Query: 126 VLDKAAPVIRPNKK 139 VL ++ Sbjct: 139 VLRSITREDPSERE 152 >UniRef50_Q2LQK4 N utilization substance protein B homolog n=1 Tax=Syntrophus aciditrophicus SB RepID=NUSB_SYNAS Length = 161 Score = 125 bits (315), Expect = 4e-28, Method: Composition-based stats. Identities = 42/137 (30%), Positives = 74/137 (54%), Gaps = 3/137 (2%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 M+ RR ARE A+Q LYS ++ + + + + A + + L+ G + Sbjct: 12 MR--QRRIAREIALQVLYSLEVVEMEAGEAIELYWAHYEAPMDARPFSSLLIEGAWKHRD 69 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D L+ + + + +V+K++LR+A++EL D+P KV +NEAI+L K +G+E+S Sbjct: 70 QIDSLIGGCSANWSIARMSKVDKSILRMAVFELCFCEDIPPKVTMNEAIDLGKVYGSENS 129 Query: 120 HKFVNGVLDKAAPVIRP 136 F+NG+LD I Sbjct: 130 GSFINGILDALYAKIHK 146 >UniRef50_D1U9R7 NusB antitermination factor n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U9R7_9DELT Length = 151 Score = 125 bits (314), Expect = 6e-28, Method: Composition-based stats. Identities = 48/143 (33%), Positives = 72/143 (50%), Gaps = 7/143 (4%) Query: 2 KPAARRRARECAVQALYSWQL----SQNDIADVEYQF-LAEQDVKDVDVLYFRELLAGVA 56 +P RR R A Q LY + DI + + E+ + + R L+ GV Sbjct: 9 RPGIRRVGRTLAFQVLYGTHFDDPKNPVDIGTAFERNPMVEEQESETAREFARALVLGVD 68 Query: 57 TNTAYLDGLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG 115 N A +D + + + + +E ++LR++LYE+ +D+P K AINEAIEL+K FG Sbjct: 69 KNLARIDAAIGEHSQHWKFDRIAVIELSILRLSLYEMLF-TDIPVKAAINEAIELSKLFG 127 Query: 116 AEDSHKFVNGVLDKAAPVIRPNK 138 E S FVNG+LD A + K Sbjct: 128 DEKSRGFVNGILDGVARTMPSGK 150 >UniRef50_C8W9W3 NusB antitermination factor n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8W9W3_ATOPD Length = 167 Score = 125 bits (314), Expect = 6e-28, Method: Composition-based stats. Identities = 42/140 (30%), Positives = 72/140 (51%), Gaps = 7/140 (5%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVE--YQFLAEQDVKDVDVLYFRELLAGVATNT 59 K R RAR A+Q L+ + + + +V L+E + + Y R L G Sbjct: 4 KFFGRTRARSQALQLLFQAEATNRSVLEVLGGDYTLSEGPLDE----YARLLAVGADGIR 59 Query: 60 AYLDGLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 LD ++ Y ++ + V++ +LRI+LYE+ K +V VAINE ++LA+++ +D Sbjct: 60 DDLDDIIAAYSKDWSIDRMPSVDRNLLRISLYEILKVPEVDVAVAINEVVDLARAYCGDD 119 Query: 119 SHKFVNGVLDKAAPVIRPNK 138 S +F+NGVL + I + Sbjct: 120 SPRFINGVLGRIVDDIDAGE 139 >UniRef50_D0WMY6 Ribosomal RNA small subunit methyltransferase B n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WMY6_9ACTO Length = 534 Score = 125 bits (314), Expect = 6e-28, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 2/126 (1%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR A + L + V +A + +D Y L G D ++ Sbjct: 69 ARLVAFEVLRAVDEDDAYANLVLPVEIARAGLNKLDAAYATNLCYGTLRMRGRWDAIISR 128 Query: 69 YLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 R + ++ +LR+ +L + P AI+E + +A++F + + FVN VL Sbjct: 129 CAKGRRIYDIDPPVLDLLRMGCEQLLAM-ETPPHAAIHETVVIARNFFGQGTGGFVNAVL 187 Query: 128 DKAAPV 133 + + Sbjct: 188 RRISEK 193 >UniRef50_A8SLL0 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SLL0_9FIRM Length = 434 Score = 125 bits (314), Expect = 6e-28, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 60/128 (46%), Gaps = 2/128 (1%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 R+ A++ L + ++ ++ + + +++ D+D + RE++ G N YLD ++K Sbjct: 1 MRKLAIEILCEIKDENSNSTNLLNK--STKNISDLDSKFLREIVYGTLENRIYLDYIIKK 58 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 +++ +LRI++Y++ +P INEA+ L K F + FVNG L Sbjct: 59 LCKLRIKKFNPYILNILRISIYQIIFMDKIPEFAIINEAVNLTKVFKLKKFSSFVNGSLR 118 Query: 129 KAAPVIRP 136 Sbjct: 119 NFLRNKED 126 >UniRef50_C2BWI2 Ribosomal RNA small subunit methyltransferase B n=3 Tax=Mobiluncus RepID=C2BWI2_9ACTO Length = 523 Score = 125 bits (314), Expect = 6e-28, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 49/130 (37%), Gaps = 2/130 (1%) Query: 2 KPAARRR-ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 + RR AR+ A QAL V + + D + EL+ G Sbjct: 38 RSKTRRDPARDVAFQALRRVDQDHAYANLVLPGLIERARLHRRDAAFATELVYGTLRLQG 97 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 D ++ R + L VLR+ ++++ + V A++ ++LA+ + Sbjct: 98 RYDAIIGLLSDRDIAALDSELVTVLRMGIHQILQM-RVEDYAAVDTMVDLARDRLSAGPA 156 Query: 121 KFVNGVLDKA 130 VN VL K Sbjct: 157 GMVNAVLRKV 166 >UniRef50_Q1MS16 N utilization substance protein B homolog n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=NUSB_LAWIP Length = 161 Score = 124 bits (313), Expect = 7e-28, Method: Composition-based stats. Identities = 46/150 (30%), Positives = 71/150 (47%), Gaps = 13/150 (8%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDV------------LYFR 49 K +RR R A Q LYS +Q + + + + + Sbjct: 5 KKHSRRIDRTKAFQVLYSLHFTQINTIETLKEIFLNLPNPLEERNTGIITELDTQISFSW 64 Query: 50 ELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAI 108 +L+ GV N LD ++ + ++ LG++E +LRIA +E+ DVP KV++NEA+ Sbjct: 65 QLVEGVWRNVTRLDKIISQFSQNWRVDRLGKIELTLLRIATFEMYYCPDVPPKVSLNEAL 124 Query: 109 ELAKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 ELA FG E + KF+NG+LD I K Sbjct: 125 ELATCFGDEKARKFINGILDAIIKAIETEK 154 >UniRef50_B6WQ80 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WQ80_9DELT Length = 157 Score = 124 bits (312), Expect = 9e-28, Method: Composition-based stats. Identities = 51/143 (35%), Positives = 77/143 (53%), Gaps = 7/143 (4%) Query: 2 KPAARRRARECAVQALYSWQLSQN-DIADVEYQFLAEQDVKDVDVL-----YFRELLAGV 55 K A+RR R A Q LY + + DV FL D ++ + + +L+ GV Sbjct: 5 KSASRRGERAQAFQVLYGLSFADATSLEDVRRAFLQSPDHQESEEGELPSGFSWDLVQGV 64 Query: 56 ATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 + LD + + ++ +G+VE +LR+A+YEL R DVP KVAINEA+EL + F Sbjct: 65 WSRRDELDKTISRFSRNWRVDRMGRVELTLLRLAMYELLYRQDVPAKVAINEALELTRQF 124 Query: 115 GAEDSHKFVNGVLDKAAPVIRPN 137 G +++ FVNG+LD AA + Sbjct: 125 GEDNATSFVNGILDAAAKALEKG 147 >UniRef50_B3DQ30 N utilization substance protein B homolog n=7 Tax=Actinobacteridae RepID=NUSB_BIFLD Length = 190 Score = 124 bits (312), Expect = 9e-28, Method: Composition-based stats. Identities = 40/134 (29%), Positives = 67/134 (50%), Gaps = 1/134 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 AR AR+ A+ LY DI + + +A + Y E++ GVA + +D Sbjct: 1 MARSTARKRALNTLYEADEKSQDILSLLDERIAHPGAQTPLPDYAIEIVKGVAEHRRQID 60 Query: 64 GLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + + + + +G V++ +LRIA +E+ DVP KVAI+EA+ LAK+ +DS F Sbjct: 61 MTLDEHSTGWKVRRMGVVDRNILRIAAWEILFTDDVPDKVAIDEALALAKTLCDDDSPAF 120 Query: 123 VNGVLDKAAPVIRP 136 ++G+L Sbjct: 121 IHGLLSAVCTAKNA 134 >UniRef50_A4TBX3 N utilization substance protein B homolog n=18 Tax=Actinomycetales RepID=NUSB_MYCGI Length = 164 Score = 124 bits (312), Expect = 9e-28, Method: Composition-based stats. Identities = 47/130 (36%), Positives = 70/130 (53%), Gaps = 5/130 (3%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVL----YFRELLAGVATNTAY 61 R +AR+ AV L+ + A+V A D D+ Y + GV + A+ Sbjct: 10 RHQARKRAVDLLFEAEARGITAAEVAEARNALADNGADDIAPLNPYTVTVARGVTDHAAH 69 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D L+ +L L+ L V++AVLR+A++EL DVP VA++EA+ELAK +DS Sbjct: 70 IDDLISAHLQGWTLDRLPAVDRAVLRVAVWELLHAVDVPEPVAVDEAVELAKQLSTDDSP 129 Query: 121 KFVNGVLDKA 130 FVNGVL + Sbjct: 130 GFVNGVLGQV 139 >UniRef50_Q3ATI5 N utilization substance protein B homolog n=9 Tax=Chlorobiaceae RepID=NUSB_CHLCH Length = 169 Score = 124 bits (312), Expect = 9e-28, Method: Composition-based stats. Identities = 45/142 (31%), Positives = 76/142 (53%), Gaps = 4/142 (2%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDV-LYFRELLAGVATNT 59 MK RR+ RE +QALY+ +L + + L E+ + D + +F LL+ + + Sbjct: 1 MKTY-RRQIREKILQALYTVELRGITLDEAAGWLLTEEILADPNAMKFFNLLLSSIKAHR 59 Query: 60 AYLDGLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF-GAE 117 +D + + + + ++K ++R+AL E+ D+P KV+INEAIE+AK F + Sbjct: 60 EEIDNYIAQQTFNWDMSRIAIIDKNIIRMALTEILYCEDIPPKVSINEAIEIAKKFNSTD 119 Query: 118 DSHKFVNGVLDKAAPVIRPNKK 139 S KFVNG+LD ++ K Sbjct: 120 KSSKFVNGILDAIFNKLKTEGK 141 >UniRef50_C0R001 Transcription antitermination protein NusB n=1 Tax=Brachyspira hyodysenteriae WA1 RepID=C0R001_BRAHW Length = 181 Score = 124 bits (312), Expect = 1e-27, Method: Composition-based stats. Identities = 42/133 (31%), Positives = 78/133 (58%), Gaps = 4/133 (3%) Query: 4 AARRRARECAVQALYSWQLSQ--NDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 ARR+AR AV +LYS++++ I ++ F ++ + + + R L+ G N Sbjct: 47 GARRQARIYAVMSLYSYEINDRKETINEIL-SFDYDKKIPENIFEFTRTLVEGTINNLER 105 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D L++ Y + ++ + V+K+++R+++Y L D+P V I+EA+E++K F +DS+ Sbjct: 106 IDNLIEKYSNNWDIKRIQYVDKSIIRMSIYSLIFLKDIPKSVVIDEAVEISKIFSDKDSY 165 Query: 121 KFVNGVLDKAAPV 133 KFVNG+LD Sbjct: 166 KFVNGILDGIQEK 178 >UniRef50_A8SLT0 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SLT0_9FIRM Length = 134 Score = 123 bits (311), Expect = 1e-27, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 2/134 (1%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 R ARE ++ +Y + N D F+ D+ +V Y R+ + N +D Sbjct: 1 MTRSEAREWCMKLIYQLSIHNNFKCDEIESFIEYFDLPSSEVKYIRKNCKSIIDNLDNID 60 Query: 64 GLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 ++K L + +++ A+LR+A+ E+ D+P VAINEAIE+A + + S+K Sbjct: 61 NIIKENLEGCWNYNRIAKIDLAILRVAVNEIYYLDDIPESVAINEAIEIANKYSTDASYK 120 Query: 122 FVNGVLDKAAPVIR 135 F+NG+L + Sbjct: 121 FINGILGTIVRAKK 134 >UniRef50_C7N4M1 Transcription antitermination factor NusB n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N4M1_SLAHD Length = 183 Score = 123 bits (311), Expect = 1e-27, Method: Composition-based stats. Identities = 43/137 (31%), Positives = 74/137 (54%), Gaps = 3/137 (2%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 K R R A+Q LY + + V + + ++ D Y R LL GVA++ Sbjct: 3 KRYDRTLGRRAALQVLYESDILGTPVDKVVDEGVVPEEAALND--YARRLLLGVASHITD 60 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D + ++ + V++A+LRI ++E+ +VP V+INEA+ELAK FG +D++ Sbjct: 61 IDRQISKSSKNWAIDRMPLVDRALLRITVFEMQHVDEVPVAVSINEAVELAKDFGGDDTY 120 Query: 121 KFVNGVLDKAAPVIRPN 137 +FVNG+L + A + + Sbjct: 121 RFVNGILGRIARTMGED 137 >UniRef50_B8ZUK7 N utilization substance protein B homolog n=16 Tax=Actinomycetales RepID=NUSB_MYCLB Length = 190 Score = 123 bits (311), Expect = 1e-27, Method: Composition-based stats. Identities = 43/129 (33%), Positives = 70/129 (54%), Gaps = 4/129 (3%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEY--QFLAEQDVK-DVDVLYFRELLAGVATNTAYL 62 R +AR+ AV L+ + ++ LA+ + Y + GV+ +TA + Sbjct: 8 RHQARKRAVDLLFEAEARDLSPLEIIEVRSALAKSKLDVAPLHPYTVVVAQGVSEHTARI 67 Query: 63 DGLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D L+ +L L+ L V++A+LR++++EL DVP VA++EA+ELAK +DS Sbjct: 68 DELIISHLQGWKLDRLPAVDRAILRVSIWELLYADDVPEPVAVDEAVELAKELSTDDSPG 127 Query: 122 FVNGVLDKA 130 FVNG+L K Sbjct: 128 FVNGLLGKV 136 >UniRef50_Q983A9 N utilization substance protein B homolog n=3 Tax=Alphaproteobacteria RepID=NUSB_RHILO Length = 155 Score = 123 bits (311), Expect = 1e-27, Method: Composition-based stats. Identities = 46/150 (30%), Positives = 79/150 (52%), Gaps = 11/150 (7%) Query: 1 MKPAARR-RARECAVQALYSWQLSQNDIADVEYQF--------LAEQDVKDVDVLYFREL 51 M+ A +R AR AVQALY ++ + + ++ ++ + ++ D +FR + Sbjct: 1 MRHANKRGAARLAAVQALYQMDVAGSGVFEITAEYEAFRLGKEVDGALYREADAQWFRAI 60 Query: 52 LAGVATNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIE 109 L GV + +D +++ L L L +A+LR +YEL KR DVP V ++E ++ Sbjct: 61 LTGVVEDQKTIDPVIRQALTDDWPLSRLDSTLRAILRAGVYELMKREDVPVAVIVSEYVD 120 Query: 110 LAKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 +AK+F ED K VN VLD+ + +R + Sbjct: 121 IAKAFYEEDEPKLVNAVLDRVSRRVRGEGR 150 >UniRef50_Q3AAM1 N utilization substance protein B homolog n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=NUSB_CARHZ Length = 144 Score = 123 bits (311), Expect = 1e-27, Method: Composition-based stats. Identities = 47/139 (33%), Positives = 72/139 (51%), Gaps = 6/139 (4%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVD-----VLYFRELLAGVATN 58 R ARE A +AL+ + D AE+ + V + REL+ GV Sbjct: 1 MNRHTARELAFKALFGLDFAPEKTLDTLESLWAEKIAEGKIPPEKLVDFSRELVRGVIEK 60 Query: 59 TAYLDGLMKPY-LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 LD +++ + + L +V+K +LR+ALYE+ R D+ V+I+EA+ELAK +G E Sbjct: 61 KERLDEIIRRRAIGWDFKRLAKVDKTLLRLALYEMLYRPDIDIPVSIDEAVELAKVYGEE 120 Query: 118 DSHKFVNGVLDKAAPVIRP 136 +S KF+NG+L A I Sbjct: 121 ESPKFINGILGYVAEHIDE 139 >UniRef50_C8WZ45 NusB/RsmB/TIM44 n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WZ45_DESRD Length = 429 Score = 123 bits (311), Expect = 1e-27, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 52/140 (37%), Gaps = 5/140 (3%) Query: 4 AARRRA----RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNT 59 +R A R+ A+ L L ++ L ++ D EL+ GV + Sbjct: 1 MSRSPALPPARQAALSCLEGVLLRDQELQASLDGVLDSASLEPRDRALATELVYGVCRHK 60 Query: 60 AYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +L+ + ++ L + +L +A YE+ +P +++ A+ K A Sbjct: 61 THLETAITRFVH-PKTRLKPRLRLILSVAAYEMLYLDRIPAYASVDWAVNAVKKRVAVQR 119 Query: 120 HKFVNGVLDKAAPVIRPNKK 139 N VL + A + + Sbjct: 120 AGVANAVLRRLADDLHNRGR 139 >UniRef50_C6BYC6 NusB antitermination factor n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BYC6_DESAD Length = 155 Score = 123 bits (311), Expect = 1e-27, Method: Composition-based stats. Identities = 52/139 (37%), Positives = 71/139 (51%), Gaps = 6/139 (4%) Query: 6 RRRARECAVQALYSWQL----SQNDIADVEYQFLAEQDVKDVD-VLYFRELLAGVATNTA 60 RR+ R A Q LY + Q A + D +L+ RELL G+ Sbjct: 10 RRKGRVLAFQVLYGLSFVPPHGGWTTERIYNQSPAVIRETEEDLILFARELLIGIWNAQE 69 Query: 61 YLDGLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 LD ++ Y +E + +VE A+LR+A+YEL + D+P KV INE IELAK FG +S Sbjct: 70 ELDEVIGRYSKHWKIERIAKVELAILRLAVYELVHKPDIPLKVGINEGIELAKKFGDGNS 129 Query: 120 HKFVNGVLDKAAPVIRPNK 138 F+NG+LD A I K Sbjct: 130 RNFINGILDAVARDIDTGK 148 >UniRef50_Q6AS22 Related to SUN protein (FMU protein) n=1 Tax=Desulfotalea psychrophila RepID=Q6AS22_DESPS Length = 454 Score = 123 bits (311), Expect = 1e-27, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 55/137 (40%), Gaps = 5/137 (3%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK ++R A + L Q + + + ++ + + ++ GV Sbjct: 1 MKTSSRY----IAAETLCQVYKKQQPVKPILEKLCQQKQLNPRERSLAMNMVFGVLRKRQ 56 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAK-SFGAEDS 119 YLD L++ + L++L L + LY+L +P +NEA+ K + + Sbjct: 57 YLDILLRKLSTVRLKKLDPFVHQALTVGLYQLFFLDSIPESAIVNEAVNSCKTAKVHKRL 116 Query: 120 HKFVNGVLDKAAPVIRP 136 H FVNG+L A Sbjct: 117 HGFVNGILRNATRQKEA 133 >UniRef50_A8VXB3 Acetyl-CoA carboxylase, biotin carboxyl carrier protein n=2 Tax=Bacillus RepID=A8VXB3_9BACI Length = 134 Score = 123 bits (310), Expect = 2e-27, Method: Composition-based stats. Identities = 51/134 (38%), Positives = 73/134 (54%), Gaps = 5/134 (3%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 RR AR A+QALY +++ + + L E + D Y L+ V LD Sbjct: 1 MKRRVARIKAIQALYQVEMTGVNPEEAIKTVLEENESMDP---YLLTLVERVLEEMDELD 57 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF-GAEDSHK 121 ++ + L L +V++A++RIA+YE+ DVP VAINEAI+LA+ F G E+S K Sbjct: 58 IKIQDSMDNWQLSRLARVDRAIMRIAMYEMIHSDDVPVSVAINEAIDLARGFSGDEESGK 117 Query: 122 FVNGVLDKAAPVIR 135 FVNGVL AA + Sbjct: 118 FVNGVLSNAAKKLE 131 >UniRef50_C4DPH0 tRNA/rRNA cytosine-C5-methylase n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DPH0_9ACTO Length = 532 Score = 123 bits (310), Expect = 2e-27, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 48/131 (36%), Gaps = 1/131 (0%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 + A R A + L + V + L + V D + EL G Sbjct: 21 RSATVDNPRRIAYEVLAAVSTQDAYANLVLPKLLRHRGVSGRDAAFATELSYGTLRRRGS 80 Query: 62 LDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 LD ++ R + L Q VLR+ +Y+L + V A N + LA+ Sbjct: 81 LDAVIASASGRAVSALDQSVADVLRLGVYQLLY-TRVAAHAAANTTVSLARKVCGHRPAG 139 Query: 122 FVNGVLDKAAP 132 FVN V+ K + Sbjct: 140 FVNAVMRKVSR 150 >UniRef50_Q022D6 NusB/RsmB/TIM44 n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q022D6_SOLUE Length = 360 Score = 123 bits (309), Expect = 2e-27, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 49/125 (39%), Gaps = 4/125 (3%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR A L + + D+ D E++ GV A LD L+ Sbjct: 6 ARIAAFDILQLVESGGYASDLLLA---RTADLDSRDAGLASEIVFGVLRYRAQLDFLIIH 62 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 Y R +L + LR+A+Y++ VP A+ E++EL K + FVN +L Sbjct: 63 YAGRS-RKLDPEVRTALRMAIYQIRYLERVPPHAAVKESVELVKRARKTSAAGFVNAILR 121 Query: 129 KAAPV 133 + Sbjct: 122 QVDRD 126 >UniRef50_D0MK26 NusB antitermination factor n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MK26_RHOM4 Length = 165 Score = 123 bits (309), Expect = 2e-27, Method: Composition-based stats. Identities = 42/138 (30%), Positives = 70/138 (50%), Gaps = 2/138 (1%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDV-LYFRELLAGVATNTAYL 62 +RR RE +QALY++++ + V L D + + +L + Sbjct: 2 HSRREVRERVLQALYAYEVGHDTAEHVIDTVLRPALKDDREALRFATQLFLRTINYSEEA 61 Query: 63 DGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D L+ ++ L + +++ +LR+A+ EL D+P KV+INEAIELAK + E S + Sbjct: 62 DRLIADHVKNWDLTRIALIDRLLLRMAICELLAFEDIPPKVSINEAIELAKKYSTEKSGQ 121 Query: 122 FVNGVLDKAAPVIRPNKK 139 FVNGVLD ++ + Sbjct: 122 FVNGVLDAVVLDLQRQGR 139 >UniRef50_B3WEW8 RRNA methylase (Putative) n=77 Tax=Bacilli RepID=B3WEW8_LACCB Length = 446 Score = 123 bits (309), Expect = 2e-27, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 48/129 (37%), Gaps = 2/129 (1%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 R AV+ L + + D ++ GV + LD Sbjct: 1 MTPNNPRLLAVETLSRVTGQGGYSNLTLDHVINSHKLTPRDAGLLTNIVYGVIQHQLTLD 60 Query: 64 GLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 + P++ +L + +L IA+Y+L VP + ++ E+AK G + KFV Sbjct: 61 FYLAPFIKGR--KLDNWIRCLLDIAVYQLQYLDKVPARAVFFDSTEIAKKLGHQGIAKFV 118 Query: 124 NGVLDKAAP 132 GVL A Sbjct: 119 TGVLRNAQR 127 >UniRef50_A6NUZ5 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NUZ5_9BACE Length = 223 Score = 123 bits (309), Expect = 2e-27, Method: Composition-based stats. Identities = 36/153 (23%), Positives = 60/153 (39%), Gaps = 15/153 (9%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDV--------------KDVDVLY 47 + R ARE AV + + ++ L Y Sbjct: 46 RNMTRTNAREIAVHLTFELSFTNQTADELLDTALTRATFALIGEEEPLYAEYPNAKQREY 105 Query: 48 FRELLAGVATNTAYLDGLMKPY-LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINE 106 EL+ GV + LD + Y + + ++ AV+R+A+YE+ DVP AINE Sbjct: 106 ISELVRGVYFHCPELDDYISRYAIGWTFSRIPRIAVAVMRVAMYEILYMQDVPNAAAINE 165 Query: 107 AIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 A+E+AK + + F+NG+L ++ Sbjct: 166 ALEIAKGYETPEVVSFINGILGSFVRKESIPER 198 >UniRef50_A4U1B3 Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p:Antitermination protein NusB n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4U1B3_9PROT Length = 437 Score = 123 bits (309), Expect = 2e-27, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 46/127 (36%), Gaps = 1/127 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R + L + + + + + D + R L+A +D ++ Sbjct: 15 RSIVLDLLECVLAQKRLLDETLDSEPRLTKLAERDRAFTRMLVATTLRRLGQIDAVIARC 74 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 + R L + +LR+ +L D P AI+ ++LAK+ K +N VL + Sbjct: 75 IDRPLPAKAGRVRNMLRLGAAQLLFL-DTPPHAAISTTVDLAKNSPLAGFAKLINAVLRR 133 Query: 130 AAPVIRP 136 R Sbjct: 134 LDREGRA 140 >UniRef50_B7APZ1 Putative uncharacterized protein n=1 Tax=Bacteroides pectinophilus ATCC 43243 RepID=B7APZ1_9BACE Length = 374 Score = 123 bits (309), Expect = 2e-27, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 50/131 (38%), Gaps = 1/131 (0%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNTAYLDGLM 66 R + L + + Q L++ + + L G + D L+ Sbjct: 9 NLRAVVLDILLENDKNPGHSNLITGQALSKFQYLPKSQRAFISRLAEGTIERSIEEDWLI 68 Query: 67 KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGV 126 S +++ V + ++R++ Y+L VP NEA++LA+ G FVNGV Sbjct: 69 DHVSSVSTKKMKPVIRNIMRMSAYQLKYMDSVPVSAVCNEAVKLARKRGFSSLTGFVNGV 128 Query: 127 LDKAAPVIRPN 137 L A I Sbjct: 129 LRSLARDINNI 139 >UniRef50_C5CBJ2 Ribosomal RNA small subunit methyltransferase RsmB n=10 Tax=Micrococcineae RepID=C5CBJ2_MICLC Length = 543 Score = 122 bits (308), Expect = 2e-27, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 50/139 (35%), Gaps = 5/139 (3%) Query: 3 PAARRR----ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATN 58 P+ R R AR A + S V + + + D + EL G Sbjct: 55 PSQRSRTADPARRVAFGVVRSVHAEDAYANLVLPARIRQARLDRRDAGFATELAYGTLRG 114 Query: 59 TAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 D ++ + R LE++ LR+ ++L VP A++ + L ++ Sbjct: 115 LGLYDAILTRCVDRPLEKIDPPVLDALRLGAHQLLGM-RVPAHAALDATVSLVRAEVGAG 173 Query: 119 SHKFVNGVLDKAAPVIRPN 137 + FVN VL + A Sbjct: 174 ASGFVNAVLRRIAERPLEE 192 >UniRef50_Q1NRI6 NusB antitermination factor n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NRI6_9DELT Length = 135 Score = 122 bits (308), Expect = 3e-27, Method: Composition-based stats. Identities = 47/131 (35%), Positives = 73/131 (55%), Gaps = 1/131 (0%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATN-T 59 M RR+ARE A+QALY ++ D + + Y RELLAG+ + Sbjct: 1 MAVGTRRKARELALQALYQGEMLGVGALDTLPSLCENFEASRRALPYARELLAGIEAHGE 60 Query: 60 AYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 A + + L+ + +++ ++RIA+YE+ R +VP VAI+EA+ELAK +GA+DS Sbjct: 61 AIDAAIDAAAANWRLDRMSYIDRNLMRIAVYEMRWRDEVPAGVAIDEAVELAKRYGADDS 120 Query: 120 HKFVNGVLDKA 130 F+NG+LD Sbjct: 121 PAFINGILDAV 131 >UniRef50_C4XHY8 N utilization substance protein B homolog n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XHY8_DESMR Length = 159 Score = 122 bits (308), Expect = 3e-27, Method: Composition-based stats. Identities = 40/141 (28%), Positives = 70/141 (49%), Gaps = 7/141 (4%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAE------QDVKDVDVLYFRELLAGVATN 58 +RR+AR+ A + LY + + D + EL+ GV N Sbjct: 12 SRRKARKQAFEFLYGLSFEPAADERSLLRLFKRCPHDVAEGEDDAGHEFAWELVLGVWRN 71 Query: 59 TAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 +D + + + + +VE +LR+A++E+ R D+P +V++NEAIEL+K +G E Sbjct: 72 QRDIDATIVRFSKNWKISRIAKVELTILRLAVHEILSRPDIPLRVSLNEAIELSKRYGDE 131 Query: 118 DSHKFVNGVLDKAAPVIRPNK 138 +S F+NG+LD A + + Sbjct: 132 NSRNFINGILDALAKAVDSGE 152 >UniRef50_B8H535 N utilization substance protein B homolog n=4 Tax=Caulobacteraceae RepID=NUSB_CAUCN Length = 149 Score = 122 bits (308), Expect = 3e-27, Method: Composition-based stats. Identities = 52/145 (35%), Positives = 71/145 (48%), Gaps = 10/145 (6%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQF--------LAEQDVKDVDVLYFRELLA 53 + R AR AVQALY ++S + V +F + + + D +F +L Sbjct: 5 RIQPRSVARLAAVQALYQMEVSGAGVDSVIREFGEHRFDRDVEGEQLAAADETFFADLAR 64 Query: 54 GVATNTAYLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELA 111 GV TN A +D + L+ LE L +AVLR +EL RSDVP +V INE +E+A Sbjct: 65 GVVTNQAKIDQGIVKRLASGWRLERLDATARAVLRAGAFELMYRSDVPTEVVINEYVEIA 124 Query: 112 KSFGAEDSHKFVNGVLDKAAPVIRP 136 KSF F+NG LD A R Sbjct: 125 KSFFEGPESGFINGALDAIARDARD 149 >UniRef50_C6MTY9 Sun protein n=1 Tax=Geobacter sp. M18 RepID=C6MTY9_9DELT Length = 449 Score = 122 bits (308), Expect = 3e-27, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 55/134 (41%), Gaps = 1/134 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 + + R A L + ++ + L++ +K D EL+ GV LD Sbjct: 1 MSSKNPRRAAFDILLRIEKEKSFADILIDHELSKDMIKGADRGLLTELVYGVLRRQGTLD 60 Query: 64 GLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 ++ + + ++L +LR+ LY+ VP A+NE ++LAK A + F+ Sbjct: 61 HIIGQFSKQRTDKLELYVLLLLRLGLYQCFFLDRVPVSAAVNETVKLAKEL-APRASGFI 119 Query: 124 NGVLDKAAPVIRPN 137 N +L A Sbjct: 120 NAILRNADRNRDNI 133 >UniRef50_B5YE05 N utilization substance protein B homolog n=2 Tax=Dictyoglomus RepID=NUSB_DICT6 Length = 144 Score = 122 bits (307), Expect = 3e-27, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 8/134 (5%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R R RE +Q L+ L Q + D + L G D + Sbjct: 5 RTRCREKVLQLLFQKDLGQ-------EVEVDFSDFSPQGQAFAYRLYDGALQYKDLADSI 57 Query: 66 MKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + + LE +G +E+ +LR+A+ E+ SD+P V +NEA+ELAK + + ++ +FVN Sbjct: 58 ISRFSKNWKLERMGALERNILRLAIAEMFTFSDIPQAVTVNEAVELAKKYVSPEAGRFVN 117 Query: 125 GVLDKAAPVIRPNK 138 G+L K Sbjct: 118 GILRNIVRNWEEVK 131 >UniRef50_B6GCG9 Putative uncharacterized protein n=2 Tax=Collinsella RepID=B6GCG9_9ACTN Length = 216 Score = 122 bits (307), Expect = 3e-27, Method: Composition-based stats. Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 5/131 (3%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R AR A+Q L+ ++ + DV D Y ++ GV N +D Sbjct: 10 RTLARSQALQILFQAEVRGESVGDVLAGDFTLSKGPLAD--YAIQIARGVDANRERIDSA 67 Query: 66 MKPYLSRL-LEELGQVEKAVLRIALYELSKR--SDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ + LE + ++ +LR A+YEL + + V INEA+E+AK++G +DS F Sbjct: 68 LRAVSANWSLERMPGADRNLLRAAVYELYFQVADTLDAAVVINEAVEIAKAYGTDDSAGF 127 Query: 123 VNGVLDKAAPV 133 VNGVL + Sbjct: 128 VNGVLGRIVRE 138 >UniRef50_B0PBD5 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PBD5_9FIRM Length = 161 Score = 122 bits (307), Expect = 3e-27, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 66/137 (48%), Gaps = 3/137 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 R +RE A ++ I ++ Q ++++ D Y L + V N +LD Sbjct: 1 MKRSESREQAFMLIFERSFKDESIDEIIEQAAIGRNLQVDD--YAYRLASDVCGNLPWLD 58 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + Y + + + +V ++LR++L+E+ VP +INEA+ELAK +G +D F Sbjct: 59 EAIASYSKKWKINRMSRVALSILRLSLWEIDHVDTVPAGASINEAVELAKKYGNDDDFSF 118 Query: 123 VNGVLDKAAPVIRPNKK 139 VNGVL +++ Sbjct: 119 VNGVLGAYVRRKDSSEQ 135 >UniRef50_D1B3U2 Transcription antitermination factor NusB n=3 Tax=Campylobacterales RepID=D1B3U2_SULD5 Length = 136 Score = 122 bits (307), Expect = 4e-27, Method: Composition-based stats. Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 2/134 (1%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 A R +ARE + LY+ + I + E+ +++ + L GV + + +D Sbjct: 2 ATRHQARESIITLLYAEDIGNAGIDKFIDELFEEKKIRNQQKEFALGLYQGVKAHLSVID 61 Query: 64 GLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + +L L E+G +E+A+LR+ YE+ S++ V INEAIELAK E S KF Sbjct: 62 EAINRHLKEWNLSEIGMLERAILRLGGYEILY-SELDNAVVINEAIELAKKLCNETSPKF 120 Query: 123 VNGVLDKAAPVIRP 136 +NGVLD Sbjct: 121 INGVLDAICKEGEA 134 >UniRef50_Q2S6K8 N utilization substance protein B homolog n=1 Tax=Salinibacter ruber DSM 13855 RepID=NUSB_SALRD Length = 160 Score = 122 bits (307), Expect = 4e-27, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 65/138 (47%), Gaps = 2/138 (1%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQ-DVKDVDVLYFRELLAGVATNTAYL 62 ++RR ARE ++ LY+ + + D + + D + L Sbjct: 2 SSRRDAREQVMKTLYANEQTDGDAEQALHALVRVPLDEDPSTRDFAEHLFRETLKTMEEA 61 Query: 63 DGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D +++ + + + +++++LR+A EL K +VP KV+++EAIE+AK + S Sbjct: 62 DEIIEKHADNWEIHRIAAIDRSLLRMATTELLKFEEVPPKVSVDEAIEIAKRYSTPRSGT 121 Query: 122 FVNGVLDKAAPVIRPNKK 139 FVNGV+D + + Sbjct: 122 FVNGVIDAILLDLHDQGR 139 >UniRef50_Q03RR0 N utilization substance protein B homolog n=23 Tax=Lactobacillus RepID=NUSB_LACBA Length = 142 Score = 122 bits (307), Expect = 4e-27, Method: Composition-based stats. Identities = 44/129 (34%), Positives = 67/129 (51%), Gaps = 4/129 (3%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKD--VDVLYFRELLAGVATNTA 60 R + RE A Q L++ + D YQ + D Y L+ GV + + Sbjct: 2 TLTRHQIRERAFQMLFALNANPEADHDALYQRVLTDDPNQLVPVPDYLATLVNGVLAHQS 61 Query: 61 YLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 LD + YLS L+ + + + +LR+A YE+ DVP +VA+NEA+ELAK+F + Sbjct: 62 ELDAQIDQYLSTGWQLKRIAKTDLVILRMAFYEIEHVDDVPNRVAVNEALELAKNFSDDR 121 Query: 119 SHKFVNGVL 127 S +F+NGVL Sbjct: 122 SRRFINGVL 130 >UniRef50_B2A534 N utilization substance protein B homolog n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=NUSB_NATTJ Length = 139 Score = 122 bits (306), Expect = 5e-27, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 78/137 (56%), Gaps = 4/137 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFL---AEQDVKDVDVLYFRELLAGVATNTA 60 +RR ARE +++ ++ + + + +V + + A++++ + Y +++ +N Sbjct: 1 MSRRTAREASMKLVFQMAFNDDHVDEVGAEDILAQAKEELNYNNYQYIETVVSRTESNLQ 60 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D ++ + ++ L +V+ ++LR+A+ E+ D+P +V+INEA+ELAK F + + Sbjct: 61 KIDEYIEKFSENWKIDRLSKVDLSILRLAISEILFFDDIPTRVSINEAVELAKKFSTDKA 120 Query: 120 HKFVNGVLDKAAPVIRP 136 ++NG+LD+ A + Sbjct: 121 SGYINGILDQVANQLNK 137 >UniRef50_Q5FNA1 N utilization substance protein B homolog n=1 Tax=Gluconobacter oxydans RepID=NUSB_GLUOX Length = 160 Score = 122 bits (306), Expect = 5e-27, Method: Composition-based stats. Identities = 42/142 (29%), Positives = 69/142 (48%), Gaps = 15/142 (10%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVK-----------DVDVLYFRELLA 53 +R AR AVQAL+ + S + V QF+ + + D D+ F+E++ Sbjct: 15 SRTIARVAAVQALFQCEQSGDTAETVISQFIRHRRISSTASFDDGHIPDADLKLFQEIVL 74 Query: 54 GVATNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELA 111 GV +D + L L L V +A+LR A++E+ +D P ++ INE +++A Sbjct: 75 GVTRRQDDIDAKLSDVLPEQWPLPRLDPVLRALLRAAVFEI--GTDTPDRIIINEYLDVA 132 Query: 112 KSFGAEDSHKFVNGVLDKAAPV 133 F + D K VNG+LD + Sbjct: 133 HGFFSGDEPKMVNGILDTLSRR 154 >UniRef50_B9XNZ3 NusB antitermination factor n=1 Tax=bacterium Ellin514 RepID=B9XNZ3_9BACT Length = 185 Score = 122 bits (306), Expect = 5e-27, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 26/153 (16%) Query: 4 AARRRARECAVQALYSWQLSQ-NDIADVEYQFLAEQD----------------------- 39 RR ARE AVQ L+ L+ + + F Q Sbjct: 21 GKRREARERAVQFLFQHDLNPPEKLEEALNHFWDSQRPAALAEDKGGATWGQKVELPAPT 80 Query: 40 -VKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSD 97 + ++ L+ G + D +K Y L + V++ +LR+A++E+ R D Sbjct: 81 AEEAAVRIFADPLIRGALEHRDEADAQIKKYAENWDLHRIAAVDRNILRLAIFEMLHRED 140 Query: 98 VPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 +P V+INEA+++AK F +S KFVNG+LDK Sbjct: 141 IPPVVSINEAVDIAKKFSTYESGKFVNGILDKI 173 >UniRef50_C4V2M6 Transcription antitermination protein NusB n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V2M6_9FIRM Length = 137 Score = 121 bits (305), Expect = 6e-27, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 66/134 (49%), Gaps = 5/134 (3%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQ---DVKDVDVLYFRELLAGVATNTA 60 +RR ARE A+ L+ + + V LA + + D+ Y L+ G + Sbjct: 1 MSRRHAREAALLTLFQREFDHDRPPIVAAGDLASDAVDGLTEKDLAYANRLVQGTCSVQP 60 Query: 61 YLDGLMKPYLS-RLLEELGQVEKAVLRIALYELSK-RSDVPYKVAINEAIELAKSFGAED 118 +D ++ L + V++ ++R+A YE+ + +AINEA+ELAK +G++D Sbjct: 61 EIDAAIECMAKEWKLHRMAPVDRNLIRMAYYEMCYQEERIDPPIAINEAVELAKKYGSDD 120 Query: 119 SHKFVNGVLDKAAP 132 + ++VNG+L Sbjct: 121 AGRYVNGILAALQK 134 >UniRef50_C4XT41 rRNA (Cytosine-C(5)-)-methyltransferase n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XT41_DESMR Length = 477 Score = 121 bits (305), Expect = 6e-27, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 50/135 (37%), Gaps = 5/135 (3%) Query: 9 ARECAVQALYSWQLS----QNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 AR A+ L S D+ LA+ + D EL+ G LD Sbjct: 45 ARRIALTVLGRVLPSPKSPGQDVQAALDVALADSTLDPRDRGLATELVYGYLRLCGRLDY 104 Query: 65 LMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 ++ +L + + +L +A YE+ + VP +++ A+ + G + N Sbjct: 105 ILAQFLKNPTA-VPLAVRRILGLAAYEILHCAKVPAYASVDWAVSAVRKAGGKGLSGMAN 163 Query: 125 GVLDKAAPVIRPNKK 139 VL + A ++ Sbjct: 164 AVLRRVAADPGAFEE 178 >UniRef50_C9KK33 Transcription antitermination factor NusB n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KK33_9FIRM Length = 143 Score = 121 bits (305), Expect = 6e-27, Method: Composition-based stats. Identities = 40/140 (28%), Positives = 68/140 (48%), Gaps = 11/140 (7%) Query: 4 AARRRARECAVQALYSWQLSQNDIAD--------VEYQFL-AEQDVKDVDVLYFRELLAG 54 +RR+ARE A+QAL+ L+ + AD L + + D + +L+ G Sbjct: 1 MSRRQAREVALQALFQLDLNPAESADQEEMQETLAIDTALGEAEAMSAHDRAFVAQLVHG 60 Query: 55 VATNTAYLDGLMKPYLS-RLLEELGQVEKAVLRIALYELSK-RSDVPYKVAINEAIELAK 112 N +D + +E + V++ + R+A YE+ + +AINEA+ELAK Sbjct: 61 TRANLEAIDAQIAANSREWKVERMAAVDRNLTRMATYEMCFAEEKLTPNIAINEAVELAK 120 Query: 113 SFGAEDSHKFVNGVLDKAAP 132 +G +DS ++VNG+L Sbjct: 121 KYGTDDSSRYVNGILGAIMK 140 >UniRef50_P71675 Putative methyltransferase Rv1407/MT1451 n=56 Tax=Actinomycetales RepID=Y1407_MYCTU Length = 457 Score = 121 bits (305), Expect = 6e-27, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 49/129 (37%), Gaps = 2/129 (1%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR A + L + V LA++ + D + EL G LD ++ Sbjct: 16 ARRAAFETLRAVSARDAYANLVLPALLAQRGIGGRDAAFATELTYGTCRARGLLDAVIGA 75 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 R + + V +LR+ Y+L R+ V A++ +E A FVNGVL Sbjct: 76 AAERSPQAIDPVLLDLLRLGTYQLL-RTRVDAHAAVSTTVEQAGIEFDSARAGFVNGVLR 134 Query: 129 KAA-PVIRP 136 A R Sbjct: 135 TIAGRDERS 143 >UniRef50_B5FCW8 Ribosomal RNA small subunit methyltransferase B n=14 Tax=Gammaproteobacteria RepID=B5FCW8_VIBFM Length = 451 Score = 121 bits (305), Expect = 7e-27, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 50/129 (38%), Gaps = 3/129 (2%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 R A + +Y + ++ + + ++K D +E+ GV L+ + + Sbjct: 27 NVRAAAAKVIYQVVDQGHSLSSALPKA--QSEIKPRDQALLQEICYGVLRFLPRLESVAQ 84 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 + + L+ +V ++ + +Y+LS +P A+ E +E K+ +N VL Sbjct: 85 SLMDKPLKGKQRVFHHLILVGIYQLSFM-RIPAHAAVAETVEGTKNLKGPKLRGLINAVL 143 Query: 128 DKAAPVIRP 136 Sbjct: 144 RNYQRSQEE 152 >UniRef50_A4XL79 Sun protein n=2 Tax=Clostridia RepID=A4XL79_CALS8 Length = 433 Score = 121 bits (305), Expect = 7e-27, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 57/139 (41%), Gaps = 7/139 (5%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK RR A ++ + +N AD + + K D F EL+ GV Sbjct: 1 MKINTRR----AAFLVIFEIESRKNVNADALMEKYHHKLKKTEDRALFVELVHGVLRYKN 56 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD + + ++ + +LRIA YEL +P +NEA ELAK+ ++ Sbjct: 57 ILDYYINFVAKKGVK--DKKILNILRIATYELLFLDKIPDYATVNEACELAKNV-NKNQK 113 Query: 121 KFVNGVLDKAAPVIRPNKK 139 FVN +L +K Sbjct: 114 DFVNAILRNIIRRKDEIEK 132 >UniRef50_C8WXH1 NusB antitermination factor n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WXH1_ALIAD Length = 166 Score = 121 bits (305), Expect = 7e-27, Method: Composition-based stats. Identities = 51/139 (36%), Positives = 74/139 (53%), Gaps = 3/139 (2%) Query: 4 AARRRARECAVQALYSWQ-LSQNDIADVEYQFLAEQDVKDV-DVLYFRELLAGVATNTAY 61 R ARECA+QAL A+ LAE+ D Y EL+ G + Sbjct: 1 MTRHEARECALQALCVLDVQRDLGSAEAIASALAERGTDAGGDFTYIEELVDGTRRHLDE 60 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D L+ ++ R E +G+VE+ VLR+A YEL ++P AI+EA+E+AK+F E S Sbjct: 61 IDELLARHMERWSPERIGRVERNVLRLATYELLFEPELPIASAIDEAVEIAKTFATEQSG 120 Query: 121 KFVNGVLDKAAPVIRPNKK 139 +FVNGVL K P + ++ Sbjct: 121 RFVNGVLAKLLPAVADRRR 139 >UniRef50_UPI00016C04B6 transcription termination factor n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C04B6 Length = 135 Score = 121 bits (305), Expect = 7e-27, Method: Composition-based stats. Identities = 43/137 (31%), Positives = 71/137 (51%), Gaps = 4/137 (2%) Query: 4 AARRRARECAVQALYSWQLSQND-IADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 RR+AR C VQ LY+ + ++ + L D+K + E G+ N + Sbjct: 1 MTRRQARICVVQMLYNLSFHDKEQAQEILNENL--LDIKGKVKTFISETFEGIVDNMDAI 58 Query: 63 DGLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D ++ L L + +V+ +LR+A+YE++ D+P KVAINEA+E+A+ + E S K Sbjct: 59 DTEIEANLVDWNLSRIAKVDLMILRLAVYEINYAKDLPPKVAINEAVEIAQEYSTEKSGK 118 Query: 122 FVNGVLDKAAPVIRPNK 138 F+NG+L + N Sbjct: 119 FINGILGNMNKKVSSNG 135 >UniRef50_A3TLN6 Putative RNA-binding Sun protein n=2 Tax=Actinobacteria (class) RepID=A3TLN6_9MICO Length = 500 Score = 121 bits (305), Expect = 7e-27, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 50/140 (35%), Gaps = 6/140 (4%) Query: 2 KPAARRR----ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVAT 57 KP+ R + AR A L + + + D + EL G Sbjct: 27 KPSERAKHAEPARLAAYTLLRAVD-DGAYANLEFPAIIRRHKLDSRDAAFATELAFGTLR 85 Query: 58 NTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 + D +++ R + VLR+ ++L VP A ++ + LA++ Sbjct: 86 MQGFYDAVIERAADRSTSTIDSGVLDVLRLGAHQLLGM-RVPTHAAADQTVGLARTVSGA 144 Query: 118 DSHKFVNGVLDKAAPVIRPN 137 + FVN V+ + + R Sbjct: 145 GASGFVNAVMRRISERTREE 164 >UniRef50_C3RII4 SUN protein n=10 Tax=Bacteria RepID=C3RII4_9MOLU Length = 417 Score = 121 bits (305), Expect = 7e-27, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 3/127 (2%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR A+ L +Q Q+ + +L + + D ++ G N YL+ + P Sbjct: 2 ARTTALDVLIKYQNEQSYLNITLNDYLEKSLLSRNDKDLATRIVYGTIQNKLYLEYQLAP 61 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 Y+ +++ EK +L ++LY+L VP I+EA+ LAK + KFVN +L Sbjct: 62 YIQG--KKIKNREKMILLMSLYQLIFLDKVPDYAVIDEAVRLAKKR-DNFAGKFVNAILR 118 Query: 129 KAAPVIR 135 + Sbjct: 119 NFLRNGK 125 >UniRef50_A4W3P3 Transcription termination factor n=6 Tax=Streptococcus suis RepID=A4W3P3_STRS2 Length = 140 Score = 121 bits (304), Expect = 8e-27, Method: Composition-based stats. Identities = 45/138 (32%), Positives = 72/138 (52%), Gaps = 5/138 (3%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVL---YFRELLAGVAT 57 M R R+CA+QA+ S + Q + ++ +L +++ + V + L+ GVA Sbjct: 1 MMKNNRHALRKCALQAIVSLEFGQEPVQAAQFSYLYDREEEQEGVEIPLFLLNLVNGVAD 60 Query: 58 NTAYLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG 115 LD + L L+ L ++K ++R+ L+E+ + P +VA+NEAIELAK F Sbjct: 61 YRDDLDKELSSRLKAGWTLDRLTLIDKNIMRLGLFEILHFEETPDRVAVNEAIELAKEFS 120 Query: 116 AEDSHKFVNGVLDKAAPV 133 E S KFVNGVL + Sbjct: 121 DESSAKFVNGVLSQFIKE 138 >UniRef50_A7HDY2 N utilization substance protein B homolog n=4 Tax=Anaeromyxobacter RepID=NUSB_ANADF Length = 143 Score = 121 bits (304), Expect = 8e-27, Method: Composition-based stats. Identities = 55/137 (40%), Positives = 81/137 (59%), Gaps = 3/137 (2%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDV-LYFRELLAGVATNTAYLD 63 R RARE A+QALY ++ I D +F + + +V + GVA + +D Sbjct: 4 KRTRARERALQALYQIDVAAEGIDDALSRFWKSFEPVEREVMEDAEGFVRGVAAHRRTID 63 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ + L+ + +V++ VLR+A+YEL R+DVP KVAINEAIEL K +G+E S F Sbjct: 64 DTIEGVSTNWRLDRMAKVDRNVLRLAVYELL-RTDVPVKVAINEAIELGKKYGSESSGAF 122 Query: 123 VNGVLDKAAPVIRPNKK 139 VNGVLDK A + P ++ Sbjct: 123 VNGVLDKVAAGLPPERR 139 >UniRef50_A7VX44 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VX44_9CLOT Length = 134 Score = 121 bits (304), Expect = 9e-27, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 66/134 (49%), Gaps = 3/134 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 R ARE A ++ + + ++ +D+ + + + GV + +D Sbjct: 1 MKRHEAREQAFFLIFERTFQEASLEELVESAQLARDIT--ICGFAQNVFHGVEKHGEEID 58 Query: 64 GLMKPYLSRLLEE-LGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 G+++ + + L +V +VLR A+YE+ +P V+INEA+E+AK++G+ + F Sbjct: 59 GMIEKHCIGWTKNRLSRVAVSVLRTAVYEMLYEEKIPVSVSINEAVEIAKTYGSTEDASF 118 Query: 123 VNGVLDKAAPVIRP 136 VNGVL A + Sbjct: 119 VNGVLGSVAKELES 132 >UniRef50_B0MQ18 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MQ18_9FIRM Length = 143 Score = 121 bits (304), Expect = 9e-27, Method: Composition-based stats. Identities = 40/139 (28%), Positives = 71/139 (51%), Gaps = 3/139 (2%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 + R RE A+ L+ +L+ + ++ +++ +L GVA + Sbjct: 4 RKLTRHEMREAALLILFQMKLNPETLDEILEDCKESFEMEYNSQS--VKLAKGVAEHEDE 61 Query: 62 LDGLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 L+G+++ Y SR L+ + + A+++IALYE+ VP KVAINEAIE AK + + Sbjct: 62 LNGIIESYSPSRKLDRISYINLAIMKIALYEMKYCPSVPDKVAINEAIEFAKEYADKTDV 121 Query: 121 KFVNGVLDKAAPVIRPNKK 139 +F+NGVL+ ++ Sbjct: 122 RFINGVLNSYYKDNPTKEQ 140 >UniRef50_A8MFJ3 N utilization substance protein B homolog n=2 Tax=Alkaliphilus RepID=NUSB_ALKOO Length = 138 Score = 120 bits (303), Expect = 1e-26, Method: Composition-based stats. Identities = 40/131 (30%), Positives = 71/131 (54%), Gaps = 1/131 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +R+ ARE ++ L+ ++ + L E +++ Y ++L N +D Sbjct: 1 MSRKLARELTMKVLFEMHINNDFNIQRVEHHLFEGSIEEQQKEYIHKVLNEAILNLEAID 60 Query: 64 GLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 +++ Y S L + V+ A+LR+A E+ D+PY+V+INEAIELAK +G++++ F Sbjct: 61 SIIEEYSTSWKLNRIANVDLAILRLAFSEIIYMKDIPYRVSINEAIELAKIYGSDETPNF 120 Query: 123 VNGVLDKAAPV 133 VNG+L K Sbjct: 121 VNGILGKYVEQ 131 >UniRef50_UPI0000E87F00 transcription antitermination protein NusB n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87F00 Length = 155 Score = 120 bits (303), Expect = 1e-26, Method: Composition-based stats. Identities = 54/136 (39%), Positives = 79/136 (58%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 RR++RE ++++Y ++Q DI ++ + D D + ++ GV N L Sbjct: 15 INNRRKSRELVMKSIYRGIVNQFDINQIKKDIREDPDFVRSDESMYLSIVEGVHNNFDSL 74 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 +K YL R +EL +E A+L +LYEL DVPY+V INEAIE+AKSFG D KF Sbjct: 75 KEEIKTYLDRSYDELSPIELAILFSSLYELKFSLDVPYRVVINEAIEVAKSFGGVDGFKF 134 Query: 123 VNGVLDKAAPVIRPNK 138 +NG+L+KAA R N+ Sbjct: 135 INGILNKAAQHNRKNE 150 >UniRef50_B9E6Q9 N utilization substance protein B homolog n=6 Tax=Staphylococcaceae RepID=NUSB_MACCJ Length = 130 Score = 120 bits (303), Expect = 1e-26, Method: Composition-based stats. Identities = 43/132 (32%), Positives = 73/132 (55%), Gaps = 4/132 (3%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +R +RE A+Q L+ + ++ VE + + DV + EL+ GV + LD Sbjct: 1 MSRTESREHAIQILFQIE-NEAHEISVEDATRFIVEPPNRDV-FADELVHGVISKQNELD 58 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + P+L LE L ++++ +LR++ +EL +D P KV +NEA+ LAK F ++S+KF Sbjct: 59 DKITPHLKSWALERLNKIDRIILRLSAFELLY-TDAPEKVIVNEAVNLAKKFSDDESYKF 117 Query: 123 VNGVLDKAAPVI 134 +NGVL + Sbjct: 118 INGVLSEIIKNK 129 >UniRef50_C4G2S0 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G2S0_ABIDE Length = 455 Score = 120 bits (303), Expect = 1e-26, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 49/131 (37%), Gaps = 2/131 (1%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQ-DVKDVDVLYFRELLAGVATNTAYLDGLM 66 RE + + V L + + L G YLD ++ Sbjct: 4 NEREIVLDM-FLSLKDGKPGHIVLKDTLDNYLYLDKASRGFITRLYEGSIEKMIYLDFVI 62 Query: 67 KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGV 126 + +++L + K ++ A+Y++ VP AINEA++LAK G FVNGV Sbjct: 63 NSFSKTPVKKLKPIIKILMETAVYQIFFMDRVPDSAAINEAVKLAKKRGLAGLSGFVNGV 122 Query: 127 LDKAAPVIRPN 137 L A Sbjct: 123 LRNIARNRENI 133 >UniRef50_D2B6P7 Transcription antitermination factor NusB n=3 Tax=Actinomycetales RepID=D2B6P7_STRRD Length = 136 Score = 120 bits (302), Expect = 1e-26, Method: Composition-based stats. Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 3/128 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +AR +AR A+ L+ + D V + L + Y ++ GV + A +D Sbjct: 2 SARGKARRRALDILFEAEARSQDPLSVLAERLERAE--PPVNEYTATIVEGVCRHRARID 59 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 L+ Y L+ + V++ +LR YEL DVP V I+E + LA ++S +F Sbjct: 60 ELITTYAEGWTLDRMPAVDRNLLRGGTYELLWMPDVPEGVVISEWVSLASELSTDESPQF 119 Query: 123 VNGVLDKA 130 VNG++ + Sbjct: 120 VNGLMARF 127 >UniRef50_Q4JVG6 N utilization substance protein B homolog n=5 Tax=Corynebacterium RepID=NUSB_CORJK Length = 202 Score = 120 bits (302), Expect = 1e-26, Method: Composition-based stats. Identities = 38/140 (27%), Positives = 70/140 (50%), Gaps = 6/140 (4%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVK----DVDVLYFRELLAGVAT 57 + +R +AR AV L+ + D ++ + ++ Y ++++ GVAT Sbjct: 19 RHGSRYKARRRAVDILFEAEFRDIDPVEIVEERISLAKDSANQVKPVPEYTQQIVPGVAT 78 Query: 58 NTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG 115 N LD + +L L+ L V++AVLR+A +EL DVP +VA+ E +ELA + Sbjct: 79 NLDALDEAIALHLSSDWQLDRLPAVDRAVLRVAAWELKFNDDVPPQVAVVEGVELASEYS 138 Query: 116 AEDSHKFVNGVLDKAAPVIR 135 + + +++ VLD ++ Sbjct: 139 HDKAPSYIHAVLDGINKDLQ 158 >UniRef50_C7Q4P0 Fmu (Sun) domain protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q4P0_CATAD Length = 493 Score = 120 bits (302), Expect = 1e-26, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 54/123 (43%), Gaps = 1/123 (0%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 +AR A++ L + + + + L ++ + D + EL G D ++ Sbjct: 12 QARAAALEVLEAVRTRDAYANLLLPRLLRDRGLSGRDAAFTTELSYGTLRGLGTYDAIIA 71 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 + R L+ + V LRI ++L DVP A++ ++L +S E + +F N +L Sbjct: 72 ACVDRDLDAVDPVVLDALRIGAHQLLAM-DVPPHAAVSTTVDLVRSVSNEGASRFANAIL 130 Query: 128 DKA 130 + Sbjct: 131 RRV 133 >UniRef50_D2RJI2 NusB antitermination factor n=2 Tax=Acidaminococcus RepID=D2RJI2_ACIFE Length = 139 Score = 120 bits (302), Expect = 1e-26, Method: Composition-based stats. Identities = 45/136 (33%), Positives = 73/136 (53%), Gaps = 6/136 (4%) Query: 4 AARRRARECAVQALYSWQLSQN-DIADVEYQFLAEQDVKD---VDVLYFRELLAGVATNT 59 +RR AR A+++L++ + S + E+D++D D+ Y +L+ GV N Sbjct: 1 MSRRDARTIAMRSLFALEFSPEQSPEETVRTMAEEEDIQDTRKKDLAYALDLVKGVRENQ 60 Query: 60 AYLDGLMKPY-LSRLLEELGQVEKAVLRIALYELSKRSD-VPYKVAINEAIELAKSFGAE 117 LDG + L+ + +++ +LRIA YE+ + VP VAINEA+ELAK +G + Sbjct: 61 EALDGELNGLDAKWTLKRMNGIDRNLLRIAGYEMFCSPEPVPPAVAINEAVELAKVYGGD 120 Query: 118 DSHKFVNGVLDKAAPV 133 DS F+NG+L Sbjct: 121 DSPAFINGLLGSLVKK 136 >UniRef50_Q2SQX3 Sun protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SQX3_HAHCH Length = 447 Score = 120 bits (301), Expect = 2e-26, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 51/136 (37%), Gaps = 6/136 (4%) Query: 4 AARRR---ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 RR+ AR A + L + + L V++ D + + L G + Sbjct: 1 MKRRKTLSARAAAAKTLRAVAEEGRSLTTAMAPALE--QVEENDRSFLQALCYGACRHYL 58 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 L+ + L + ++ + +L L++L+ P V+INE + + K + Sbjct: 59 TLEHWLGQLLRQPIKAKERDIHFLLLSGLHQLAFMDK-PAHVSINETVNVTKELNKLWAT 117 Query: 121 KFVNGVLDKAAPVIRP 136 K VNGVL Sbjct: 118 KLVNGVLRSFQRRKDE 133 >UniRef50_B0NZC1 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0NZC1_9CLOT Length = 167 Score = 120 bits (301), Expect = 2e-26, Method: Composition-based stats. Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 3/137 (2%) Query: 4 AARRRARECAVQALYSWQL--SQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 R RE + L+ + + VE F +++ + E + + Sbjct: 31 MKRSEVREHIFRILFCVEFCEKEEFEDQVELYFHGHENINEKTQKEITEKTENLIEHLDE 90 Query: 62 LDGLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D + + + LE LG+ E ++LR+A YE+ VP KVAINEA+ELAK + E + Sbjct: 91 IDEQISAHTNAWNLERLGKAELSILRLATYEILLDEQVPRKVAINEAVELAKKYCNEKAA 150 Query: 121 KFVNGVLDKAAPVIRPN 137 F+NGVL K + Sbjct: 151 PFINGVLSKIGQDMDEE 167 >UniRef50_D1PM68 Ribosomal RNA small subunit methyltransferase B n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM68_9FIRM Length = 437 Score = 120 bits (301), Expect = 2e-26, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 4/124 (3%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAE--QDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 R AV+AL + + V L + ++ D + + V LD L+ Sbjct: 4 RRLAVKALLHQEQAG-YANLVLDAELKKCTPPLEGRDAAFAARIFYTVLEYQPLLDFLLD 62 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 + + + L +A+LR L + +VP A+NE+++L K+ G + VN VL Sbjct: 63 RFSKKPVARLDAPVRAILRAGLAQARFM-EVPLPAAVNESVKLTKAMGKTSAAGMVNAVL 121 Query: 128 DKAA 131 +AA Sbjct: 122 RRAA 125 >UniRef50_A6LU43 N utilization substance protein B homolog n=6 Tax=Clostridium RepID=NUSB_CLOB8 Length = 133 Score = 120 bits (301), Expect = 2e-26, Method: Composition-based stats. Identities = 47/133 (35%), Positives = 78/133 (58%), Gaps = 3/133 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLA--EQDVKDVDVLYFRELLAGVATNTAY 61 R+ +RE A++ L+ LS++ + D F+ E D+K++D+ Y +++L GV N Sbjct: 1 MNRKLSREKAMELLFGMTLSKDTMEDAVEAFVENYEGDIKEIDLTYVKQVLIGVNNNKEA 60 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D +++ L +E + +V ++LRIA YEL +VP VAINEA+E+ + + E S Sbjct: 61 IDKVIQENLHNWKIERISKVNLSILRIATYELLYDKEVPRGVAINEALEITRRYSDEKSV 120 Query: 121 KFVNGVLDKAAPV 133 F+NGVLDK Sbjct: 121 SFINGVLDKIKQD 133 >UniRef50_C7H0C2 Transcription antitermination factor NusB n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H0C2_9FIRM Length = 135 Score = 120 bits (301), Expect = 2e-26, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 67/132 (50%), Gaps = 1/132 (0%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 R +AR A+Q ++ + + + + L++ + Y RE+ + V N +D Sbjct: 4 NRSKARTIAMQIIFQIPVHKTTDKVLVDKILSDYKNIGKEEAYIREVFSLVTDNIDAIDA 63 Query: 65 LMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 + + ++ + +V+ A+LR+A+ E+ D+P VA+NEA+ +AK F + S KF+ Sbjct: 64 ELNAKMKGWTIDSIPKVDLAILRLAVAEICYAKDIPKVVAVNEAVRIAKKFSDDKSAKFI 123 Query: 124 NGVLDKAAPVIR 135 NG+L + Sbjct: 124 NGILANIGKDYK 135 >UniRef50_B8FS79 Sun protein n=2 Tax=Desulfitobacterium hafniense RepID=B8FS79_DESHD Length = 453 Score = 120 bits (301), Expect = 2e-26, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 2/124 (1%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 +R AVQ L + + V + L + + L+ G + LD ++ Sbjct: 6 SRALAVQILRRIEEEKAYANLVMQKALHDLS-DPRERQLATLLVNGTLKHRLTLDYALRR 64 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 +L + L +L + +LRI+ ++ S +P VAINE +EL K VN VL Sbjct: 65 HLRKPLSQLPHEVRWILRISALQILYLSRIPAAVAINEGVELTKKQQG-KYTSLVNSVLR 123 Query: 129 KAAP 132 + Sbjct: 124 RVLE 127 >UniRef50_A4XLC1 N utilization substance protein B homolog n=2 Tax=Clostridia RepID=NUSB_CALS8 Length = 142 Score = 120 bits (301), Expect = 2e-26, Method: Composition-based stats. Identities = 43/141 (30%), Positives = 75/141 (53%), Gaps = 6/141 (4%) Query: 4 AARRRARECAVQALYSWQLSQNDIADV-----EYQFLAEQDVKDVDVLYFRELLAGVATN 58 RR+ RE ++ LY+++ N+ + + +++ K++D Y ++LL GV N Sbjct: 2 HKRRKTRELCMKILYAYRFQNNEYDIIEFLNKFKELNPDENFKEIDEEYLKKLLTGVIRN 61 Query: 59 TAYLDGLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 +D L++ Y L + VE ++RIA+YEL ++P VAI+EA++L+ FG E Sbjct: 62 QQLIDNLIEKYSKDWPLSRIPMVELELMRIAIYELLFEEEIPISVAIDEAVDLSSIFGVE 121 Query: 118 DSHKFVNGVLDKAAPVIRPNK 138 + FVNG+L A + Sbjct: 122 KAPSFVNGILGSIAVNEVKRE 142 >UniRef50_Q3AC21 Sun protein n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AC21_CARHZ Length = 440 Score = 119 bits (300), Expect = 2e-26, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 49/132 (37%), Gaps = 3/132 (2%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 RE ++ L + + + + + + +A K D + EL GV LD + Sbjct: 2 NLRELVIKTLVEVEKNNSYVNLLLPKLIANLA-KKEDKDFVVELTYGVLKQLKLLDYMAG 60 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 L + +L +R+ LY+L VP AINE +E K VNGVL Sbjct: 61 KLLKKR-SKLPPFVINAIRVGLYQLYFLDKVPTYAAINETVEAVKR-NYRGFTGVVNGVL 118 Query: 128 DKAAPVIRPNKK 139 K Sbjct: 119 RNFIRRREEITK 130 >UniRef50_A0JX79 N utilization substance protein B homolog n=3 Tax=Actinomycetales RepID=NUSB_ARTS2 Length = 136 Score = 119 bits (300), Expect = 2e-26, Method: Composition-based stats. Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 3/130 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +AR +AR A+ L+ + DV + + Y E++ GV ++ A +D Sbjct: 2 SARGKARNRALDVLFEAEQRSLSAFDVLRSRREKT--DQIVNPYTLEIVEGVVSHQAAID 59 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ Y LE + V++ +LRI +EL DVP VA++EA+ LAK+ ++S F Sbjct: 60 EFLETYSQGWTLERMPSVDRIILRIGTWELLYNDDVPDGVAVSEAVALAKTLSTDESPSF 119 Query: 123 VNGVLDKAAP 132 +NG+L + Sbjct: 120 INGLLGRLQQ 129 >UniRef50_C4ZCZ0 N utilization substance protein B homolog n=5 Tax=Clostridiales RepID=NUSB_EUBR3 Length = 131 Score = 119 bits (300), Expect = 2e-26, Method: Composition-based stats. Identities = 41/131 (31%), Positives = 68/131 (51%), Gaps = 3/131 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVD--VLYFRELLAGVATNTAY 61 R + RE + L+ + + + L ++ D Y E + + + A Sbjct: 1 MTRSKIRENVFKMLFRVEFHDKSELAEQMELLNDELTNPTDEERQYIDEKCSAIIEHMAE 60 Query: 62 LDGLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD L+ + + +V+ A++R+A+YE+ D+P KV+INEA+ELAK +GA++S Sbjct: 61 LDALIDEKSTGWKTNRMAKVDLAIIRLAVYEIKFEDDIPTKVSINEAVELAKKYGADESG 120 Query: 121 KFVNGVLDKAA 131 FVNGVL K A Sbjct: 121 AFVNGVLAKFA 131 >UniRef50_Q0ABQ3 N utilization substance protein B homolog n=2 Tax=Ectothiorhodospiraceae RepID=NUSB_ALHEH Length = 178 Score = 119 bits (300), Expect = 3e-26, Method: Composition-based stats. Identities = 54/132 (40%), Positives = 72/132 (54%), Gaps = 17/132 (12%) Query: 18 YSWQLSQNDIADVEYQFLAEQDVKDV-----------------DVLYFRELLAGVATNTA 60 Y WQ++ D+ +E Q L + D YFR LL GV Sbjct: 29 YQWQMTGQDLGAIEAQHLEIDPEEPPVEAGDDEHYPRYPHDGLDRPYFRALLHGVPARLN 88 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD ++P L R L L +EKA+LR+ +ELS+R D P++V INEA+ LAK FGAE SH Sbjct: 89 DLDQALEPLLDRPLRTLDPLEKALLRLGAWELSERMDTPWRVIINEAVNLAKRFGAEQSH 148 Query: 121 KFVNGVLDKAAP 132 +++NGVLDK A Sbjct: 149 RYINGVLDKLAR 160 >UniRef50_C4FTS3 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FTS3_9FIRM Length = 154 Score = 119 bits (300), Expect = 3e-26, Method: Composition-based stats. Identities = 46/145 (31%), Positives = 72/145 (49%), Gaps = 10/145 (6%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDV------LYFRELLAGV 55 K + R + RE AVQ ++ Q ++ + A + D + Y L+ GV Sbjct: 10 KMSNRHQVREKAVQTIFQLIRPQVPVSLDQACAFALEAGNDPEAGFEGSDAYLDRLVQGV 69 Query: 56 ATNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSK--RSDVPYKVAINEAIELA 111 LD + YL L+ L +++ A+LR+A YEL +VP KVA+NEA+ELA Sbjct: 70 NQTAEELDQRISHYLAEDWTLDRLARIDLAILRVAFYELLYVSEDEVPSKVAVNEAVELA 129 Query: 112 KSFGAEDSHKFVNGVLDKAAPVIRP 136 K+F + S +F+NGVL ++ Sbjct: 130 KTFSDDKSKQFINGVLAGLLKDLKN 154 >UniRef50_B1C5S4 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C5S4_9FIRM Length = 450 Score = 119 bits (299), Expect = 3e-26, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 55/131 (41%), Gaps = 1/131 (0%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 +R A + L ++ + LA + + D ++ GV L+ ++ Sbjct: 10 SRVSAYKVLSEVLMTGAYSNIALTKHLASIKI-EADRRLCTNIVHGVIKKINKLEYVLST 68 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 + + EL + K L I LY++ + +P +N+++ L K F + + FVNG+L Sbjct: 69 LSNTPVNELDERVKISLYIGLYQIIYLNKIPEYAIVNDSVNLVKMFVGKKASGFVNGILR 128 Query: 129 KAAPVIRPNKK 139 A K+ Sbjct: 129 NALRKKHELKE 139 >UniRef50_C5VC90 Transcription antitermination factor NusB n=2 Tax=Corynebacterium matruchotii RepID=C5VC90_9CORY Length = 312 Score = 119 bits (299), Expect = 3e-26, Method: Composition-based stats. Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 6/132 (4%) Query: 14 VQALYSWQLSQNDIADVEYQFLAEQDVK----DVDVLYFRELLAGVATNTAYLDGLMKPY 69 V LY + D + + V Y E++AGVA +D ++ Y Sbjct: 34 VDVLYEAEARDVDPVAIVEDRINLARVDITLVAPIAAYTSEIIAGVAEELNRIDDVIAEY 93 Query: 70 L--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 L + L + V++A+LR+A++E+ DVP K A++EA+ELA + + ++N VL Sbjct: 94 LAENWELSRISAVDRAILRVAVWEMIFNPDVPVKTALSEAVELASQYSGASAPAYINAVL 153 Query: 128 DKAAPVIRPNKK 139 D I ++ Sbjct: 154 DSVVKNIDDLRR 165 >UniRef50_A5GRG8 Ribosomal RNA small subunit methyltransferase B n=19 Tax=cellular organisms RepID=A5GRG8_SYNR3 Length = 454 Score = 119 bits (299), Expect = 3e-26, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 44/129 (34%), Gaps = 1/129 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R A + L + + L + D EL G LDG + Sbjct: 32 RLVAWRVLEAV-GDGAYADLALERELKRSKLSPRDRGLATELAYGAIRQRRRLDGWLDLL 90 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 + + +L + L ++ VP A++ A+ELAK + VNGVL Sbjct: 91 GKVPAAKQPPRLRWLLHVGLQQILLMDRVPASAAVSTAVELAKRERLQRLAPVVNGVLRA 150 Query: 130 AAPVIRPNK 138 A + + Sbjct: 151 AVRAVEAGE 159 >UniRef50_C9LUP3 Transcription antitermination factor NusB n=2 Tax=Selenomonas RepID=C9LUP3_9FIRM Length = 160 Score = 119 bits (299), Expect = 3e-26, Method: Composition-based stats. Identities = 45/140 (32%), Positives = 70/140 (50%), Gaps = 11/140 (7%) Query: 4 AARRRARECAVQALYSWQLSQNDIAD--------VEYQFLAEQDVK-DVDVLYFRELLAG 54 +RR+ARE A+Q L+ +L+ A + E V+ D Y L+ G Sbjct: 21 MSRRQAREAALQTLFQLELNPPSEAASEEACQMWALDAAVEEMPVETKRDYSYAASLVRG 80 Query: 55 VATNTAYLDGLMKPYL-SRLLEELGQVEKAVLRIALYELSK-RSDVPYKVAINEAIELAK 112 + A +D + L+ + V++ ++RIALYE+ V +AINEA+ELAK Sbjct: 81 TREHLAAIDEEIAASTHDWKLDRMTGVDRNIVRIALYEMKYGAEKVDVGIAINEAVELAK 140 Query: 113 SFGAEDSHKFVNGVLDKAAP 132 FG +DS ++VNG+L A Sbjct: 141 KFGTDDSSRYVNGILGGLAR 160 >UniRef50_C8WEQ4 NusB antitermination factor n=4 Tax=Zymomonas mobilis RepID=C8WEQ4_ZYMMN Length = 157 Score = 119 bits (299), Expect = 4e-26, Method: Composition-based stats. Identities = 41/144 (28%), Positives = 67/144 (46%), Gaps = 10/144 (6%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQF--------LAEQDVKDVDVLYFRELLAG 54 AR AR AVQALY ++ + + + +F + + + +F +++ G Sbjct: 10 KNARSAARLAAVQALYQREMEKTPLNILLDEFHQYRLGATIEDATYTKAEPSFFDDIVRG 69 Query: 55 VATNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAK 112 V T +D ++ L L+ L + + +LR YEL R DVP I+E I++A Sbjct: 70 VGTRCEEIDRVISENLSERWSLDRLDRPMRQILRAGTYELLARPDVPTATIISEYIDVAN 129 Query: 113 SFGAEDSHKFVNGVLDKAAPVIRP 136 +F FVNG+LD A +R Sbjct: 130 AFYDRQEKNFVNGLLDTVAKKLRS 153 >UniRef50_A5EVR1 Transcription antitermination factor NusB n=2 Tax=Cardiobacteriaceae RepID=A5EVR1_DICNV Length = 145 Score = 118 bits (298), Expect = 4e-26, Method: Composition-based stats. Identities = 53/132 (40%), Positives = 76/132 (57%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 R +AR +Q LY WQ+ +D V+ + + ++D YF A + TNT LD Sbjct: 13 QRSQARRQLLQGLYQWQIIGDDAEIVKENQMIDARAGEIDHDYFDAAWAYITTNTEQLDC 72 Query: 65 LMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 ++ R + L VE A+L I +YEL++R D+ V INEA+ELAK FG++D +KFVN Sbjct: 73 CAADFIRRNMATLDPVEHAILWIGIYELTQRIDIHQNVIINEAVELAKQFGSDDGYKFVN 132 Query: 125 GVLDKAAPVIRP 136 GVLD+ A R Sbjct: 133 GVLDQCAKRHRA 144 >UniRef50_Q1Q7P9 Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q7P9_9BACT Length = 462 Score = 118 bits (298), Expect = 4e-26, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 54/129 (41%), Gaps = 1/129 (0%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 R +++ L ++ + + +V D EL+ G+ + LD ++ Sbjct: 3 VRLESIRILRKVDEKDVLAQELVEERCQQTNVSRRDKHLLLELVNGITRHRLSLDTILSF 62 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF-GAEDSHKFVNGVL 127 + +++ LR+ +Y++ +P+ A+N ++EL K+ D+ +F N +L Sbjct: 63 FSKIPPQKIEPWLLYALRLGIYQMIFLDKIPHSAAVNTSVELVKNLIRRPDAARFANAIL 122 Query: 128 DKAAPVIRP 136 I+ Sbjct: 123 RAVDRTIKN 131 >UniRef50_C8R080 Sun protein n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R080_9DELT Length = 501 Score = 118 bits (298), Expect = 4e-26, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 2/132 (1%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQ-DVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 R+ A++ L + + V ++ A + D R L+ V +LD ++ Sbjct: 19 RQVALEILLQQEQQNRPLDQVLAEYPARRWPSDRRDRQLVRALVYEVLRRRGFLDHVVAR 78 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE-DSHKFVNGVL 127 Y L ++ + A LR+ L +L +P AI+E I K+ FVNG+L Sbjct: 79 YAKHPLAKMKPLTLAALRLGLAQLLYFDRLPPAAAIDETIRALKAARQPRWITGFVNGLL 138 Query: 128 DKAAPVIRPNKK 139 AA + Sbjct: 139 RNAARERAELLR 150 >UniRef50_B0REX0 N utilization substance protein B homolog n=4 Tax=Actinobacteria (class) RepID=NUSB_CLAMS Length = 137 Score = 118 bits (298), Expect = 4e-26, Method: Composition-based stats. Identities = 40/133 (30%), Positives = 70/133 (52%), Gaps = 6/133 (4%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDV----LYFRELLAGVATNT 59 +AR +AR+ A+ LY + I ++ + D Y RE+ G + Sbjct: 2 SARTKARKRALDVLYVADIRGESIPATLA-VEQQRAAAEPDRQASWAYAREIAEGFVEHQ 60 Query: 60 AYLDGLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 +D L++ Y + L + V++A+LRI ++E+ +DVP VAI+E+++LA S ++ Sbjct: 61 DEIDELIETYSVNWTLARMPAVDRAILRIGIWEILFNADVPDGVAISESVDLASSLSTDE 120 Query: 119 SHKFVNGVLDKAA 131 S FVNG+L + A Sbjct: 121 SASFVNGMLARIA 133 >UniRef50_C2D814 Putative uncharacterized protein n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D814_9ACTN Length = 239 Score = 118 bits (298), Expect = 4e-26, Method: Composition-based stats. Identities = 43/136 (31%), Positives = 70/136 (51%), Gaps = 7/136 (5%) Query: 6 RRRARECAVQALYSWQLSQNDIADVE--YQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 R AR A+Q ++ + + DV L+E + D + + L G LD Sbjct: 13 RTLARSQALQLMFQAESRNMQVCDVLATNYLLSEGPLDD----FGKRLALGTDELRDKLD 68 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 L+ ++ L L V++ +LR+ALYE+ K DV V INE++ LAK++G ++S F Sbjct: 69 ALISRVITNWNLNRLLSVDRNILRLALYEMIKVDDVDIAVTINESVNLAKAYGTDESSHF 128 Query: 123 VNGVLDKAAPVIRPNK 138 VNGVL + A ++ + Sbjct: 129 VNGVLGQVARMMENGR 144 >UniRef50_C3XMJ2 Transcription termination protein n=1 Tax=Helicobacter winghamensis ATCC BAA-430 RepID=C3XMJ2_9HELI Length = 199 Score = 118 bits (297), Expect = 5e-26, Method: Composition-based stats. Identities = 41/131 (31%), Positives = 68/131 (51%), Gaps = 2/131 (1%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 A R AR Q LY++ + I+ + L+E +K+ + + L GV + +D Sbjct: 2 ATRTHARVAVAQLLYAYGSGNDGISKFVEEILSEHKIKNAQNEFAKTLFNGVLEHLEEVD 61 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 +K + E +G +E+A+LR+ YE+ S + + INEA+E+ K+F E S KF Sbjct: 62 LRIKHQIKNWDFERIGDMERAILRLGAYEIIF-SGMDKAIVINEALEITKNFSNETSTKF 120 Query: 123 VNGVLDKAAPV 133 +NG+LD A Sbjct: 121 INGILDGIAKN 131 >UniRef50_Q03FY2 tRNA and rRNA cytosine-C5-methylase n=2 Tax=Pediococcus RepID=Q03FY2_PEDPA Length = 444 Score = 118 bits (297), Expect = 5e-26, Method: Composition-based stats. Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 2/128 (1%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR AV L + Q + + D+D E++ GV + LD + Sbjct: 8 ARNLAVDILEKIDE-GSFSNIQLNQDIKSSSLIDIDKNLLTEIVYGVLQHRLTLDFYLAD 66 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 Y+ + E + +LR A++++ VP NE+IE+AK G + K V GVL Sbjct: 67 YIRKP-EMTPRWVINLLRTAVFQMEFLDRVPDFAIFNESIEIAKLRGNDGIRKMVTGVLR 125 Query: 129 KAAPVIRP 136 +P Sbjct: 126 SYQRNGKP 133 >UniRef50_B5YHQ2 N utilization substance protein B homolog n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=NUSB_THEYD Length = 151 Score = 118 bits (297), Expect = 6e-26, Method: Composition-based stats. Identities = 39/141 (27%), Positives = 77/141 (54%), Gaps = 11/141 (7%) Query: 4 AARRRARECAVQALYSWQLSQN--------DIADVEYQFLAEQ--DVKDVDVLYFRELLA 53 RR+ARE +Q LY+ ++++N + + +F + + +L+ Sbjct: 1 MKRRKAREYVLQFLYACEMNENTQKICNYNFLQEEIEKFWERNYEEQNSDIKSFANQLIE 60 Query: 54 GVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAK 112 G + +D +++ Y + +E + ++K +LR ++YE+ R D+PY+V INEA+E+AK Sbjct: 61 GTIEHIDIIDKIIQKYADKWNIERMITIDKNILRFSIYEILYRQDIPYQVTINEAVEIAK 120 Query: 113 SFGAEDSHKFVNGVLDKAAPV 133 + ++S F+NG+LD+ A Sbjct: 121 KYSTKESAAFINGILDRIAKE 141 >UniRef50_C0AZZ3 Putative uncharacterized protein n=1 Tax=Proteus penneri ATCC 35198 RepID=C0AZZ3_9ENTR Length = 194 Score = 118 bits (297), Expect = 6e-26, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 56/135 (41%), Gaps = 5/135 (3%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK + R A +A+ ++ V + ++++ D D +E+ GV Sbjct: 1 MKTS--YNLRSIAAKAINQVLDQGLSLSTVIPEL--QKNISDKDKALLQEICFGVLRTLP 56 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 L+ +++ + + L+ ++ ++ + LY+L + +P A+ E + A + Sbjct: 57 QLEWIIQQLMDKPLKGKQRILHYLIMVGLYQLLY-TRIPAHAALAETVNGAVALKKPQLK 115 Query: 121 KFVNGVLDKAAPVIR 135 +NGVL + Sbjct: 116 GLINGVLRQFQRQQD 130 >UniRef50_D0WFZ4 Transcription antitermination factor NusB n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WFZ4_9ACTN Length = 218 Score = 118 bits (296), Expect = 6e-26, Method: Composition-based stats. Identities = 40/142 (28%), Positives = 71/142 (50%), Gaps = 10/142 (7%) Query: 1 MKPAARRR---ARECAVQALYSWQLSQNDIADVEYQ--FLAEQDVKDVDVLYFRELLAGV 55 M A R+ R A LY ++ + + + E + + Y R LL G Sbjct: 1 MGKAKRQEHTFGRRSAASVLYQSEIIGKPVDRILEEGDIPEEAGLNE----YGRLLLLGF 56 Query: 56 ATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 + + A +D ++ + + + V++ +LRI +YE+ VP V+INEA+E+AK F Sbjct: 57 SAHRAEIDRIISERSANWAVNRMPMVDRELLRITVYEMKYVDAVPIPVSINEAVEIAKEF 116 Query: 115 GAEDSHKFVNGVLDKAAPVIRP 136 G +DS++F+NG+L + A + Sbjct: 117 GGDDSYRFINGLLGRVARDLDE 138 >UniRef50_Q47QY5 N utilization substance protein B homolog n=21 Tax=Actinomycetales RepID=NUSB_THEFY Length = 142 Score = 118 bits (296), Expect = 7e-26, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 68/136 (50%), Gaps = 3/136 (2%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 + +R +AR AV+ LY ++ +++V + + + +L V + A Sbjct: 6 RRGSRHKARVRAVEILYEAEVRGVPVSEVIER--RRAQTEPPINEFTEQLATRVDEHRAR 63 Query: 62 LDGLMKPY-LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D L++ Y + L+ + V++ +LRI +YEL D+P VAI EA+ +AK ++S Sbjct: 64 IDELLETYAIGWTLDRMPVVDRNILRIGVYELLWADDIPDGVAIAEAVAMAKELSTDESP 123 Query: 121 KFVNGVLDKAAPVIRP 136 FVNG+L + Sbjct: 124 VFVNGLLSRLMEKKPS 139 >UniRef50_C1I679 NusB antitermination factor n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I679_9CLOT Length = 134 Score = 118 bits (296), Expect = 7e-26, Method: Composition-based stats. Identities = 48/134 (35%), Positives = 78/134 (58%), Gaps = 3/134 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDV--DVLYFRELLAGVATNTAY 61 R+R+RE A++ L+ LS+N + + F+ + ++ D+ Y + +LA V N Sbjct: 1 MNRKRSREIAMELLFGMTLSKNTLEETIETFIEDYEMNLKTIDLEYIKGILAKVEENITV 60 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D ++ L+ ++ + +V ++LR+A+ E+ DVP KVAINEAIEL K + E S Sbjct: 61 IDQKIEEALTNWKIDRVSKVNISILRLAIAEMLYVEDVPEKVAINEAIELTKKYSDEKSV 120 Query: 121 KFVNGVLDKAAPVI 134 FVNGVLDKA + Sbjct: 121 SFVNGVLDKAFKSL 134 >UniRef50_D1U6T4 NusB/RsmB/TIM44 n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U6T4_9DELT Length = 425 Score = 118 bits (296), Expect = 8e-26, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 51/127 (40%), Gaps = 1/127 (0%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR A++AL S +DI L+ + D E+ G + ++ ++ Sbjct: 12 ARRIALEALSHCLFSGHDIQATLDTALSAKPTDPRDTGLATEIAYGYLRHKGRVEYVLSR 71 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 +L + L + + +A YE+ VP +++ A+E +K+ N VL Sbjct: 72 FLQDPGK-LPPKMRLAMGVAAYEMIFLDKVPAYASVDWAVEFSKTKPGTRLSGLFNAVLR 130 Query: 129 KAAPVIR 135 + A + Sbjct: 131 RVAELGE 137 >UniRef50_Q7USA9 N utilization substance protein B homolog n=2 Tax=Planctomycetaceae RepID=NUSB_RHOBA Length = 145 Score = 118 bits (296), Expect = 8e-26, Method: Composition-based stats. Identities = 43/139 (30%), Positives = 67/139 (48%), Gaps = 3/139 (2%) Query: 2 KPAARRRARECAVQALYSWQLSQ-NDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 + + RRRARE +Q LY L+ D A + + V + ELL G Sbjct: 4 RMSTRRRAREIVLQLLYEADLNDWRDAATSRKFIRSRLQGRKVLTDFAAELLDGTMARRD 63 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D + + L + ++ VLR+ YE+ S P +VAI+EA+ LAK +G E+S Sbjct: 64 DIDAKLTKLSTNWALHRMPVTDRNVLRLGAYEILY-SGTPGQVAISEALTLAKRYGGENS 122 Query: 120 HKFVNGVLDKAAPVIRPNK 138 +F+NGVLD+ + Sbjct: 123 PRFINGVLDRLFKYHSNPE 141 >UniRef50_A0LUG6 N utilization substance protein B homolog n=2 Tax=Actinomycetales RepID=NUSB_ACIC1 Length = 145 Score = 118 bits (296), Expect = 8e-26, Method: Composition-based stats. Identities = 38/127 (29%), Positives = 66/127 (51%), Gaps = 3/127 (2%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 AR +AR+ A+ L+ L D ++ A Y L+ GVA + A +D Sbjct: 3 ARTKARKRALDVLFEADLRAADPLEILADHTARA--DTPVPEYAVRLVEGVAAHRAEIDR 60 Query: 65 LMKPY-LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 +++ + + L+ + V++ +LR+A+YEL ++VP V + EA++LA+ +S FV Sbjct: 61 IIEQFAVGWTLQRMPTVDRNILRLAIYELLWVTEVPDAVVLAEAVKLAQDLSTAESAPFV 120 Query: 124 NGVLDKA 130 NGVL Sbjct: 121 NGVLAAV 127 >UniRef50_C0W3L2 rRNA (Cytosine-C(5)-)-methyltransferase n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W3L2_9ACTO Length = 527 Score = 117 bits (295), Expect = 9e-26, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 50/132 (37%), Gaps = 1/132 (0%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 +P+ AR +++AL + V L + D + L G Sbjct: 58 RPSTVDAARLVSLEALTKVRQDGGFANLVLPPMLDAARLDRRDAGFATALTYGTLRLQGR 117 Query: 62 LDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D ++ + R L++L V VLR+ ++L V A++ ++LA + Sbjct: 118 YDAIIAQCVDRRLDQLDGVVLDVLRLGTHQLLGM-RVATHAAVSATVDLASHAAGRGAAG 176 Query: 122 FVNGVLDKAAPV 133 VN VL + + Sbjct: 177 LVNAVLRRISQK 188 >UniRef50_D1N6Z8 NusB antitermination factor n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N6Z8_9BACT Length = 170 Score = 117 bits (295), Expect = 1e-25, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 15/153 (9%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADV----------EYQFLAEQDVKDVDVLYFREL 51 KP A+R RE A+Q L+ + + E L E + Y ++L Sbjct: 13 KPHAKRLGRELAMQYLFRCDMRDELPSAATFGQFFEEVREQHALQENRLARKGREYAQQL 72 Query: 52 LAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIEL 110 VA + +D ++ + L V++ ++RIA+ E+ +VP V+I+EA+E+ Sbjct: 73 YNNVAVHKEEIDATIQARSENWEWDRLSVVDRNIMRIAVAEMLYEEEVPPVVSIDEAVEI 132 Query: 111 AKSFGAEDSHKFVNGVL----DKAAPVIRPNKK 139 A+ + E + F+NGVL D R +K+ Sbjct: 133 ARDYSGEAAGNFINGVLNGVKDTLKRSPRGDKR 165 >UniRef50_A7HX88 NusB antitermination factor n=1 Tax=Parvibaculum lavamentivorans DS-1 RepID=A7HX88_PARL1 Length = 171 Score = 117 bits (295), Expect = 1e-25, Method: Composition-based stats. Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 10/136 (7%) Query: 12 CAVQALYSWQLSQNDIADVEYQFLA--------EQDVKDVDVLYFRELLAGVATNTAYLD 63 AVQALY ++ + +V +F+ + ++ D ++F +++ GV LD Sbjct: 25 FAVQALYQMDIAATPLDEVVEEFVEHRLEEPEGDNEIFAADKVHFEDVVRGVVREQRELD 84 Query: 64 GLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 + L+ L L +A+LR YEL + DVP KV INE +E+A +F D Sbjct: 85 VQVNSALAKGWSLARLDATLRAILRCGTYELRRCKDVPLKVVINEYVEIAHAFFEGDEPG 144 Query: 122 FVNGVLDKAAPVIRPN 137 VN VLD+ IR Sbjct: 145 VVNAVLDRLGRDIRAG 160 >UniRef50_Q1NQ57 Fmu, rRNA SAM-dependent methyltransferase n=2 Tax=delta proteobacterium MLMS-1 RepID=Q1NQ57_9DELT Length = 487 Score = 117 bits (295), Expect = 1e-25, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 58/141 (41%), Gaps = 4/141 (2%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDV-KDVDVLYFRELLAGVATNT 59 M P A R+ A+Q L + + S + + L E + D L+ GV Sbjct: 1 MTPTA--NIRQVALQLLLAQEQSGQPVEQLLEHQLREHPLADGRDRRLLEALVYGVLRWR 58 Query: 60 AYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE-D 118 LD ++ Y L ++ + A LR+ + +L +P AINE I+ ++ Sbjct: 59 GLLDQVVAGYARHPLAKMKPLTLAALRLGILQLLILERLPASAAINETIKALRAARQPRW 118 Query: 119 SHKFVNGVLDKAAPVIRPNKK 139 FVN VL KAA I + Sbjct: 119 LTGFVNAVLRKAAADIERLGR 139 >UniRef50_C9RN69 NusB antitermination factor n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RN69_FIBSS Length = 146 Score = 117 bits (294), Expect = 1e-25, Method: Composition-based stats. Identities = 42/134 (31%), Positives = 70/134 (52%), Gaps = 1/134 (0%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 M + R AR A+Q LY+ ++S +AD L Q ++D Y +L+ V + A Sbjct: 1 MAQVSFRPARVFAMQLLYAMEISGGTVADALPGVLEAQPLQDNMKKYGMKLVDLVLAHKA 60 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 LD ++ + +E + +++ VLRIA+ EL ++P KV I+EA+++A F + S Sbjct: 61 ELDSEIEACSAHWGIERMATLDRIVLRIAMVELLYVPEIPMKVVISEAVQVAAKFSTDSS 120 Query: 120 HKFVNGVLDKAAPV 133 FVNG+L Sbjct: 121 GTFVNGLLAGFLQK 134 >UniRef50_Q836W8 N utilization substance protein B homolog n=39 Tax=Lactobacillales RepID=NUSB_ENTFA Length = 154 Score = 117 bits (294), Expect = 1e-25, Method: Composition-based stats. Identities = 46/143 (32%), Positives = 73/143 (51%), Gaps = 10/143 (6%) Query: 5 ARRRARECAVQALYSWQLS-QNDIADVEYQFLAE-------QDVKDVDVLYFRELLAGVA 56 R RE A+QAL+ + D LA +D +D+ Y L+ GV Sbjct: 11 TRHEIREKALQALFPLDFNADLTKQDAIDYALAYDNREIVSEDGEDLVPTYLDLLVGGVC 70 Query: 57 TNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 + A LD ++ +L + ++ L +++ +LR+A++E+ SDVP VA+NEA+EL+K + Sbjct: 71 SRKAELDEVITNHLGNNWSMQRLAKIDIVILRLAIFEMLYVSDVPNIVALNEAVELSKKY 130 Query: 115 GAEDSHKFVNGVLDKAAPVIRPN 137 + S KFVNGVL I Sbjct: 131 SDDRSRKFVNGVLSNVMKEIDSE 153 >UniRef50_B0CL95 N utilization substance protein B homolog n=42 Tax=Alphaproteobacteria RepID=NUSB_BRUSI Length = 171 Score = 117 bits (294), Expect = 1e-25, Method: Composition-based stats. Identities = 47/146 (32%), Positives = 71/146 (48%), Gaps = 10/146 (6%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQF--------LAEQDVKDVDVLYFRELLAGV 55 R AR A QALY ++ + +V ++ + D D +FR ++AGV Sbjct: 18 NKRGVARLAAAQALYQMDVAGTGVMEVVAEYEAFRLGKEVDGTQYLDADPQWFRAIVAGV 77 Query: 56 ATNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKS 113 + LD ++ L L L +A+LR +EL R DVP V ++E +++AK+ Sbjct: 78 VEDQLKLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELKARKDVPTAVIVSEYVDIAKA 137 Query: 114 FGAEDSHKFVNGVLDKAAPVIRPNKK 139 F ED K VN VLD+ A VIR + Sbjct: 138 FYTEDEPKLVNAVLDRLALVIRGESR 163 >UniRef50_B9K874 Sun protein n=6 Tax=Thermotogaceae RepID=B9K874_THENN Length = 431 Score = 117 bits (293), Expect = 1e-25, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 7/125 (5%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R R A + L ++ + + L+ + D D + +EL+ GV LD Sbjct: 2 RTNVRLLAYRLLRKYEKEKFLDREDVDSVLSV--LNDRDRRFLKELVWGVMRKEELLDWY 59 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 + L ++ + LR+ +Y+L VP A++E ++L K E+ K VN Sbjct: 60 INQLLRNP--DIPPAVRVALRMGVYQLLFMDGVPDYAAVSETVKLVK---NENFKKLVNA 114 Query: 126 VLDKA 130 VL + Sbjct: 115 VLRRV 119 >UniRef50_C2GHU0 16S rRNA M(5)C 967 methyltransferase n=1 Tax=Corynebacterium glucuronolyticum ATCC 51866 RepID=C2GHU0_9CORY Length = 620 Score = 117 bits (293), Expect = 1e-25, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 45/124 (36%), Gaps = 5/124 (4%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R + AL + + + E + D + E+ G LD ++ Sbjct: 141 RLITLSALGAVFNDGAYGNIALPREITEAGLSGRDAAFATEIGYGTMRMVGVLDEIIGSC 200 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 SR + EL + LR+ +Y+L + V A++ ++ L + FVN +L Sbjct: 201 SSRPMSELDPIVLNALRMGIYQLLY-TRVEDHAAVDTSVRLV----PQRVKGFVNAILRA 255 Query: 130 AAPV 133 Sbjct: 256 VQKK 259 >UniRef50_Q317Q8 Sun protein n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q317Q8_DESDG Length = 444 Score = 117 bits (293), Expect = 2e-25, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 52/145 (35%), Gaps = 9/145 (6%) Query: 1 MKPAARRR--------ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELL 52 MK + RR AR A++ L + + V +L + + D EL+ Sbjct: 1 MKKQSPRRGGVATLPPARGAALEILRDVLDKKREAQSVLDSYLKDNRLSPQDAALCTELV 60 Query: 53 AGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAK 112 G + + L++ +L L + I++YE+ VP +++ A+ + Sbjct: 61 YGYLRSEIRISWLIRRFLK-PDSRLPAELLLTMGISVYEILYLQRVPVYASVDWAVSYVR 119 Query: 113 SFGAEDSHKFVNGVLDKAAPVIRPN 137 S + N VL + Sbjct: 120 SRFGTGLSRLANAVLRSIDRLGDAP 144 >UniRef50_C8PUW0 NusB antitermination factor n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PUW0_9GAMM Length = 186 Score = 117 bits (293), Expect = 2e-25, Method: Composition-based stats. Identities = 47/132 (35%), Positives = 74/132 (56%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLM 66 R+AR VQ LY W L+ N ++E +E + V + Y+ ELL+ + + L + Sbjct: 29 RKARRFVVQGLYEWLLTGNPSHEIEAHTRSENAMHTVHLGYYHELLSKIIEQSDDLIAYI 88 Query: 67 KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGV 126 L+R L +VE+AVL + YE+ + +VPYKV I+EAI+L FG+ D +K ++ V Sbjct: 89 DSLLNRPWTRLDKVEQAVLLVGAYEMKQHLEVPYKVVIDEAIQLNTHFGSSDGYKMIHVV 148 Query: 127 LDKAAPVIRPNK 138 +DK A R + Sbjct: 149 MDKIAKDARMPE 160 >UniRef50_D2EIA0 Transcription antitermination factor NusB n=1 Tax=Pediococcus acidilactici 7_4 RepID=D2EIA0_PEDAC Length = 134 Score = 116 bits (292), Expect = 2e-25, Method: Composition-based stats. Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 4/132 (3%) Query: 5 ARRRARECAVQALYSWQLS-QNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 R + RE A + +++ ++ D +++ Q L E DV + L+ GV N + ++ Sbjct: 4 NRHQMRESAFKMIFAQSVNPDADPEELKKQVLEEFHETDVADPFLDNLVTGVQENVSSIN 63 Query: 64 GLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 + L + L ++ +L+I YE+ ++VP VAINEA+ELAK + E + K Sbjct: 64 ETIGKELKAGWTVNRLANPDRVILQIGTYEIKH-TEVPNNVAINEALELAKKYTDEKARK 122 Query: 122 FVNGVLDKAAPV 133 F+NGVL A Sbjct: 123 FINGVLSNVAKD 134 >UniRef50_Q12TA7 Sun protein n=8 Tax=Gammaproteobacteria RepID=Q12TA7_SHEDO Length = 428 Score = 116 bits (292), Expect = 2e-25, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 44/129 (34%), Gaps = 2/129 (1%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 R A +A++ ++ D EL GV LD + Sbjct: 3 NLRALAAKAIFDVLEKGLSLSVALPLQQQHVQ-NGKDKALLAELCYGVMRQLPQLDKCVS 61 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 L++ + ++ +L + Y+L + +P A++E E + + K VNGVL Sbjct: 62 DCLAKPFKGKQRILHQLLLVGCYQL-YFTRIPSHAAVSETAEACRQLKFDGLVKVVNGVL 120 Query: 128 DKAAPVIRP 136 Sbjct: 121 RNIQRQEPE 129 >UniRef50_B0VHI6 Putative 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VHI6_9BACT Length = 438 Score = 116 bits (292), Expect = 2e-25, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 49/127 (38%), Gaps = 1/127 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R A + + + +Q + D F L+ GV LD +++ Y Sbjct: 4 RSEAYTTILKVLKDKEYSDTLLHQRAKKLKNAGEDPALFYNLVKGVIKLYLKLDYILQQY 63 Query: 70 L-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 + + + K +L + LY+L + +P A+NE +ELAK+ FVN VL Sbjct: 64 VDKKKYTDTDIKIKVLLYMGLYQLLYLNSIPDYAAVNETVELAKTLFNPQVADFVNAVLR 123 Query: 129 KAAPVIR 135 Sbjct: 124 NYLRNPE 130 >UniRef50_C0VVW4 Transcription antitermination protein NusB n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VVW4_9CORY Length = 342 Score = 116 bits (291), Expect = 3e-25, Method: Composition-based stats. Identities = 43/144 (29%), Positives = 65/144 (45%), Gaps = 8/144 (5%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAE----QDVKDVDVLYFRELLAGVAT 57 K AR +AR A + L+ + D +V + V Y RE++ GVA Sbjct: 9 KHGARYKARRHAAEILFEAEARDIDPVEVTRTREELSHGPEPVTAPVRPYTREIIEGVAV 68 Query: 58 NTAYLDGLMKPYL---SRLLEELGQVEKAVLRIALYELSKR-SDVPYKVAINEAIELAKS 113 N +D ++ L + L V++AVLR+A +EL S+VP K A+ +A+EL Sbjct: 69 NLDLIDFAIERELADTDWTFDRLPGVDRAVLRVATWELLFNASNVPQKTAVTQAVELVSQ 128 Query: 114 FGAEDSHKFVNGVLDKAAPVIRPN 137 +DS +VN VLD Sbjct: 129 LSTDDSPAYVNAVLDAMWKNPESP 152 >UniRef50_D0LW51 NusB antitermination factor n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LW51_HALO1 Length = 150 Score = 116 bits (291), Expect = 3e-25, Method: Composition-based stats. Identities = 46/141 (32%), Positives = 74/141 (52%), Gaps = 4/141 (2%) Query: 1 MKPAARRRARECAVQALYSWQLSQ-NDIADVEYQFLAEQDV--KDVDVLYFRELLAGVAT 57 MK ARRRAR A+Q LY+ L+ + ++ D+ + + R L+ V Sbjct: 1 MKVGARRRARSYALQVLYALDLNPLEEPTRALLEYAGRFDLRIDEEAGDFARSLIEQVYP 60 Query: 58 NTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 + +D ++ +E + +V++ VLR+A+ ELS+ +V INEA+ELAK FG Sbjct: 61 HLERIDERIQTASRNWRIERMSRVDRNVLRLAVGELSQPDGAAARVVINEAVELAKRFGT 120 Query: 117 EDSHKFVNGVLDKAAPVIRPN 137 +S FVNG+LD+ R + Sbjct: 121 TESPAFVNGILDRVDQHKRDD 141 >UniRef50_B2VK95 Ribosomal RNA small subunit methyltransferase B n=3 Tax=Erwinia RepID=RSMB_ERWT9 Length = 429 Score = 116 bits (291), Expect = 3e-25, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 52/136 (38%), Gaps = 5/136 (3%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK R A Q + +++V ++ V D D +EL GV Sbjct: 1 MKKMT--NLRCIAAQTIEKVVEQGQSLSNVLPAA--QKSVGDKDAALLQELCYGVLRTLP 56 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 L+ ++ +SR + + ++ + LY+L + +P A+ E +E A + Sbjct: 57 QLEWVIGRLMSRPMTGKQRAVHFLIMVGLYQLMF-TRIPAHAALAETVEGAVALKRPQLK 115 Query: 121 KFVNGVLDKAAPVIRP 136 +NGVL + Sbjct: 116 GLINGVLRQFQRQQDE 131 >UniRef50_A6BZY6 Sun protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6BZY6_9PLAN Length = 477 Score = 115 bits (290), Expect = 3e-25, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 55/126 (43%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLM 66 R AR+ A L ++ + I+D Q+ D+ D E+ GV LD ++ Sbjct: 31 RSARQLAFFLLEEYRRTDQFISDSMQQWERRIDLSSADWRLAMEISIGVVRRQLTLDTII 90 Query: 67 KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGV 126 + L+R E++ +L+I Y+L +P A++E +ELA K VN + Sbjct: 91 ESQLTRPREKVEAPLWTLLQIGAYQLVMLDQIPDHAAVSETVELAGKLQRVRWKKMVNAI 150 Query: 127 LDKAAP 132 L + Sbjct: 151 LRSISR 156 >UniRef50_C4DFR3 Transcription antitermination factor NusB n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DFR3_9ACTO Length = 147 Score = 115 bits (290), Expect = 3e-25, Method: Composition-based stats. Identities = 44/133 (33%), Positives = 64/133 (48%), Gaps = 5/133 (3%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDV---DVLYFRELLAGVATNTAY 61 ARR+AR+ AV LY + I V Y EL+ GVA Sbjct: 11 ARRKARKRAVDVLYEAEQRDEPIRRVLEDRRKLAVTDPQMPGIPEYTFELVDGVAEYLDE 70 Query: 62 LDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D ++ L L+ + V++ +LR+A +EL R DV VAI+EA+++A+ EDS Sbjct: 71 VDDVIARCLHSGWYLDRIAAVDRNILRVAAFELRYREDVDAAVAISEAVKIAEVLCGEDS 130 Query: 120 HKFVNGVLDKAAP 132 FVNGVL + Sbjct: 131 PAFVNGVLQSVSE 143 >UniRef50_Q6NH08 N utilization substance protein B homolog n=1 Tax=Corynebacterium diphtheriae RepID=NUSB_CORDI Length = 182 Score = 115 bits (289), Expect = 4e-25, Method: Composition-based stats. Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 6/141 (4%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDV----LYFRELLAGVAT 57 + +R +AR AV L+ ++ D + + + DV Y +E+++G A Sbjct: 12 RRGSRYKARRRAVDILFEAEMRDIDPVAIVEDRVVLSRLNGTDVNQVPSYTKEIVSGAAM 71 Query: 58 NTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG 115 LD L+ +L LE + V++A+LR++++EL DVP AI E +ELA + Sbjct: 72 ELDRLDELIAAHLAEDWSLERIMTVDRAILRVSVWELIFNPDVPLATAIIEGVELASEYS 131 Query: 116 AEDSHKFVNGVLDKAAPVIRP 136 + S +V+ +LD A I Sbjct: 132 TDVSPAYVHALLDSIAKNIDE 152 >UniRef50_Q5HW85 N utilization substance protein B homolog n=24 Tax=Epsilonproteobacteria RepID=NUSB_CAMJR Length = 132 Score = 115 bits (289), Expect = 5e-25, Method: Composition-based stats. Identities = 42/133 (31%), Positives = 70/133 (52%), Gaps = 3/133 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 A R + R+ + LY+++L+ + + L E+ +++ + L G+ N +D Sbjct: 2 ATRHQVRQSVISLLYAFELNSQN-NVFVDEILDEKKIRNEQKNFTLNLYNGILDNLNNID 60 Query: 64 GLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + +L + LG VE+A+LR+ YEL +D P + INEAIELAK ++S KF Sbjct: 61 ETLNSFLNDNQITALGHVERAILRLGAYELLF-TDTPSAIVINEAIELAKELANDNSPKF 119 Query: 123 VNGVLDKAAPVIR 135 +NGVLD + Sbjct: 120 INGVLDALIKAKK 132 >UniRef50_Q1JF82 N utilization substance protein B homolog n=57 Tax=Streptococcus RepID=NUSB_STRPD Length = 150 Score = 115 bits (289), Expect = 5e-25, Method: Composition-based stats. Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 9/144 (6%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVL------YFRELLAGVAT 57 +RR RE A QAL++ ++ ++ V D + L+ GV Sbjct: 7 NSRRDLRERAFQALFNIEM-GAELLAASQFAYGYDKVTREDAQVLELPIFLLSLVTGVNN 65 Query: 58 NTAYLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG 115 + LD L+ +L LE L +K +LR+ L+E+ + P +VA+NE IE+AK + Sbjct: 66 HKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEVAKKYS 125 Query: 116 AEDSHKFVNGVLDKAAPVIRPNKK 139 E S KF+NG+L + K Sbjct: 126 DETSAKFINGLLSQYVSEAPSANK 149 >UniRef50_C6XRR6 Fmu (Sun) domain protein n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XRR6_HIRBI Length = 487 Score = 115 bits (288), Expect = 5e-25, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 51/132 (38%), Gaps = 2/132 (1%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 ++R A L D+ + +++ D + R + + +D ++ Sbjct: 62 QSRRAAADILMRIVHEGADMDEALASSKFFDELEGPDRGFARAIASAALRAFGRIDDALE 121 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG-AEDSHKFVNGV 126 YL R LE++ ++LR+ +L P A++ +E A+ + A VN + Sbjct: 122 TYLDRPLEKIDPAVLSLLRVGCAQLWVL-KAPSYAAVDATVEAARQWKPASRGGGMVNAI 180 Query: 127 LDKAAPVIRPNK 138 L +A + Sbjct: 181 LRRAGREPEAYE 192 >UniRef50_B0VJ63 N utilization substance protein B n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VJ63_9BACT Length = 153 Score = 115 bits (288), Expect = 5e-25, Method: Composition-based stats. Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 15/150 (10%) Query: 4 AARRRARECAVQALYSWQLS------------QNDIADVEY-QFLAEQDVKDVDVLYFRE 50 RR+ARE AVQ LYS + S + + E Sbjct: 2 GQRRKAREMAVQCLYSLEFSEVEKDYREYGLLNEYPDILLSLAEAEHIQPNSPVYAFADE 61 Query: 51 LLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIE 109 L+ N ++ + LE++ +++++L +A YEL +D P V INEAIE Sbjct: 62 LVKNTIINIEQVESEIDKLSDNWELEDIALLDRSILCLAAYELLF-TDTPAPVVINEAIE 120 Query: 110 LAKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 +AK F +E S KF+NG+LD I K Sbjct: 121 IAKKFSSEASGKFINGILDALNKEIIQKGK 150 >UniRef50_B1ZVQ6 NusB antitermination factor n=3 Tax=Verrucomicrobia RepID=B1ZVQ6_OPITP Length = 147 Score = 115 bits (288), Expect = 5e-25, Method: Composition-based stats. Identities = 39/141 (27%), Positives = 74/141 (52%), Gaps = 6/141 (4%) Query: 4 AARRRARECAVQALYSWQLS-QNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 A RR R A+Q L++W ++ ++A+ F + + EL+ GV ++ + Sbjct: 7 AQRRDGRVAALQYLFAWSMNRPRNLAEDLRVFFENMEQPRDHYAFGEELIHGVIEHSDDI 66 Query: 63 DGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D +K + + +++ +LR+A++E+ R D+P V+INEAI+L+K F D+ + Sbjct: 67 DARIKGLAHNWEFDRIAKIDLTILRLAIFEILHRKDIPPVVSINEAIDLSKQFSNADAKR 126 Query: 122 FVNGVLDK----AAPVIRPNK 138 F+NG+LD+ R + Sbjct: 127 FINGILDRLKDQVGRDARKAE 147 >UniRef50_D1KDZ6 Transcription termination factor n=1 Tax=uncultured SUP05 cluster bacterium RepID=D1KDZ6_9GAMM Length = 142 Score = 115 bits (288), Expect = 5e-25, Method: Composition-based stats. Identities = 53/136 (38%), Positives = 82/136 (60%), Gaps = 1/136 (0%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 ++R+RE VQA+Y + +S ++ +E QFL +++ + +F L + N L Sbjct: 4 KTPKQRSRERVVQAVYQYLVSGGEVLQIEQQFLNQKE-GKISKAFFSNLFINILKNRIEL 62 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 D L+ P +SR +ELG VE AVL + +YEL +VPYKV INEA+E+AK +GAE + K Sbjct: 63 DELIAPTISRETDELGSVEHAVLYLGVYELQNSIEVPYKVVINEALEIAKLYGAEGAFKL 122 Query: 123 VNGVLDKAAPVIRPNK 138 +N LD+ A +R + Sbjct: 123 INSSLDQLAKDLRELE 138 >UniRef50_Q0APG4 N utilization substance protein B homolog n=3 Tax=Alphaproteobacteria RepID=NUSB_MARMM Length = 160 Score = 115 bits (288), Expect = 6e-25, Method: Composition-based stats. Identities = 44/136 (32%), Positives = 65/136 (47%), Gaps = 10/136 (7%) Query: 13 AVQALYSWQLSQNDIADVEYQFLAE--------QDVKDVDVLYFRELLAGVATNTAYLDG 64 AVQALY ++ + V +F + + D +F L+AGV A +D Sbjct: 24 AVQALYQMEIGGLGASAVIREFREHRFGACGEAPEFVEADEDFFESLVAGVVERQADVDP 83 Query: 65 LMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 M L LE L +A+LR+ +EL R DVP +V I+E IE+A +F KF Sbjct: 84 AMDALLADKWRLERLDATVRAILRVGGFELLYRKDVPARVVIDEYIEVANAFFEGAEPKF 143 Query: 123 VNGVLDKAAPVIRPNK 138 +N D+ A RP++ Sbjct: 144 INAAFDRCARGARPDE 159 >UniRef50_C1XPK4 NusB antitermination factor n=2 Tax=Meiothermus RepID=C1XPK4_9DEIN Length = 156 Score = 115 bits (288), Expect = 6e-25, Method: Composition-based stats. Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 16/148 (10%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLA--------------EQDVKDVDVLYFREL 51 RR+ARE A + L+ + + + + + + + R L Sbjct: 2 RRKARELAFKVLFEHAVGGVSLEEAWEHVSQNHDPEEASSERDSYDDPLDQGGLEFARRL 61 Query: 52 LAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIEL 110 L G + + +D ++ + ++ + + AVLR+A YE+ PY I A+++ Sbjct: 62 LEGYQRHESEIDEVLGNTIQGWSFGQMAKTDLAVLRLAAYEMLYEP-TPYAPLIEVAVKI 120 Query: 111 AKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 AK +G EDS +FVNGVL + I + Sbjct: 121 AKRYGGEDSGRFVNGVLGRLLKRIENAE 148 >UniRef50_Q38XV0 N utilization substance protein B homolog n=9 Tax=Lactobacillus RepID=NUSB_LACSS Length = 142 Score = 115 bits (288), Expect = 6e-25, Method: Composition-based stats. Identities = 45/141 (31%), Positives = 70/141 (49%), Gaps = 9/141 (6%) Query: 1 MKPAARRRARECAVQALYSWQLSQN-DIADVEYQFLAEQDVKDVDV------LYFRELLA 53 M R + R+ A Q L++ +Q+ ++ D L +V Y L++ Sbjct: 1 MPNFNRHQIRQAAFQVLFTLNANQSLELEDAYQAVLTMDQFDAEEVTPVEVPAYLAFLVS 60 Query: 54 GVATNTAYLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELA 111 GV N A LD + PYL L L + + +LR+ L+E+ ++ P KVA+NEA+ELA Sbjct: 61 GVTENQAALDAALTPYLKKGWQLSRLAKPDLIILRLGLFEMQNSTEAPAKVALNEALELA 120 Query: 112 KSFGAEDSHKFVNGVLDKAAP 132 K F + + F+NGVL K Sbjct: 121 KQFTDDQAKGFINGVLSKFVE 141 >UniRef50_Q03FZ6 N utilization substance protein B homolog n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=NUSB_PEDPA Length = 133 Score = 114 bits (287), Expect = 7e-25, Method: Composition-based stats. Identities = 38/131 (29%), Positives = 72/131 (54%), Gaps = 4/131 (3%) Query: 5 ARRRARECAVQALYSWQLS-QNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 R + RE A + +++ + D+++++ Q L E + + ++L+ GV+ N ++ Sbjct: 4 NRHQIRESAFKIIFAKSANPDADLSELQDQVLEEFHETEAPDQFLKDLVMGVSLNLEAIN 63 Query: 64 GLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 + L ++ L ++ +L++ YE+ ++ P KVAINEA+ELAK + ED+ K Sbjct: 64 ETISGELKKGWTVKRLESPDRVILQMGTYEIKY-TETPDKVAINEALELAKKYTDEDARK 122 Query: 122 FVNGVLDKAAP 132 F+NGVL A Sbjct: 123 FINGVLSNIAK 133 >UniRef50_B9CP02 Transcription antitermination factor NusB n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CP02_9ACTN Length = 161 Score = 114 bits (287), Expect = 7e-25, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 68/139 (48%), Gaps = 7/139 (5%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVE--YQFLAEQDVKDVDVLYFRELLAGVATNT 59 K R AR A+Q L+ + + + +V L+E + Y +L G Sbjct: 4 KFFGRTLARSQALQLLFQAEQTNRTVEEVLQGEYVLSEGPLDP----YAEKLACGTDGIR 59 Query: 60 AYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 LD ++ Y + + V++ +L+++LYE+ + S+V + INE IEL+ ++ ++ Sbjct: 60 DDLDMILNAYSHGWSVSRMPSVDRNLLQLSLYEMLEVSEVDVSITINEVIELSHAYCGDE 119 Query: 119 SHKFVNGVLDKAAPVIRPN 137 S +F+NG+L + A I Sbjct: 120 SPRFINGILGRVAADIAEG 138 >UniRef50_B0SB76 N utilization substance protein B homolog n=6 Tax=Leptospira RepID=NUSB_LEPBA Length = 140 Score = 114 bits (287), Expect = 8e-25, Method: Composition-based stats. Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 1/131 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 ++R R R A+ LY L D ++ + + Y L+ GV N +D Sbjct: 2 SSRHRGRSLALMCLYQIDLVGTDPDRAMKFDWYDKKITREEKDYAVFLVKGVVENRKAID 61 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 L+K Y L + V + +LR+++ L K + V INEA+EL K F E+S +F Sbjct: 62 TLIKKYSENWELSRISVVNRCILRLSILSLQKEPFLAAPVVINEAVELTKEFETEESAQF 121 Query: 123 VNGVLDKAAPV 133 +NG+LD Sbjct: 122 INGLLDAFYKK 132 >UniRef50_Q6A8H8 N utilization substance protein B homolog n=2 Tax=Propionibacterium acnes RepID=NUSB_PROAC Length = 261 Score = 114 bits (287), Expect = 8e-25, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 5/135 (3%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 + R +AR+ A+ L+ L D +V + + +L+ GVA LD Sbjct: 37 STRSKARKQALDILFEADLIGTDPLEVLAA--RPGVFTNPVRPFAADLVRGVAATQVGLD 94 Query: 64 GLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 ++ LS L + +V++ + R+ +E+ +D P I+EAIEL++ F +DS Sbjct: 95 SVLTDCLSEGWTLARMPRVDRILARLGAFEILH-TDTPNPAVISEAIELSEEFSTDDSAP 153 Query: 122 FVNGVLDKAAPVIRP 136 F+NG+L Sbjct: 154 FLNGLLGAVITHGPA 168 >UniRef50_Q2WB24 tRNA and rRNA cytosine-C5-methylase n=3 Tax=Alphaproteobacteria RepID=Q2WB24_MAGSA Length = 431 Score = 114 bits (286), Expect = 9e-25, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 50/136 (36%), Gaps = 2/136 (1%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK A+ R AV L + DV ++D D + R LL Sbjct: 1 MKRASSTSPRAIAVDLLSMVLDKGRLLDDVLDDS-RLSRLEDRDRGFVRMLLGTTLRRLG 59 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D L++ L + + + LR+ + +L DV AI+ ++L K Sbjct: 60 QIDTLIEHCLDKPMRAGAAGAEHALRLGICQLLFL-DVAPHAAISTTVDLVKGSKLAGFA 118 Query: 121 KFVNGVLDKAAPVIRP 136 K +N VL + R Sbjct: 119 KLLNAVLRRLDREGRD 134 >UniRef50_Q0F2C5 Transcription antitermination protein NusB n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F2C5_9PROT Length = 145 Score = 114 bits (286), Expect = 9e-25, Method: Composition-based stats. Identities = 50/139 (35%), Positives = 80/139 (57%), Gaps = 4/139 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDI---ADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 A R +ARE ++ LY+W +Q D ++ L ++ D D Y RE + G+ +T Sbjct: 2 ANRHQARESVLETLYAWSSAQQDSGMIPELLASRLQHEERADQDESYLREAVYGITDHTD 61 Query: 61 YLDGLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 LD L+K + R L + Q+E V+R+A++E+ R ++PY+V INEA+EL + + E Sbjct: 62 ALDELIKTAVRGRSLRSVAQIEINVIRLAVWEMQNRLEIPYRVIINEALELTRDYAGEPP 121 Query: 120 HKFVNGVLDKAAPVIRPNK 138 F+NGVLD A +RP + Sbjct: 122 RGFINGVLDNLAKQLRPAE 140 >UniRef50_A5ZPE1 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=A5ZPE1_9FIRM Length = 180 Score = 114 bits (286), Expect = 9e-25, Method: Composition-based stats. Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 3/139 (2%) Query: 4 AARRRARECAVQALYSWQLSQND--IADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 R RE + L+ Q + + V F ++++ D + + + Sbjct: 1 MRRSEQREHIFKLLFMTQFNSENEMSDQVSMYFDTLGELEEKDQEAIQNKYQHILEHLDE 60 Query: 62 LDGLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D ++ Y + +V+ LR+A+YE+ +VP VAINEA+ELAK FG EDS Sbjct: 61 IDQILNEYSRGWKTTRMNRVDLTALRLAVYEMKMDEEVPVGVAINEAVELAKLFGGEDSG 120 Query: 121 KFVNGVLDKAAPVIRPNKK 139 FVNG+L K A + + + Sbjct: 121 SFVNGILGKIASGKKDSGE 139 >UniRef50_A3EVA3 Transcription antitermination factor (NusB) n=2 Tax=Leptospirillum sp. Group II RepID=A3EVA3_9BACT Length = 168 Score = 114 bits (286), Expect = 9e-25, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 64/133 (48%), Gaps = 5/133 (3%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLM 66 +AR +Q+L++ + F + L+ L + + +D ++ Sbjct: 22 HKARIEVLQSLFA----GEYLPGGPPPFTLTSTLPSQARLFRDRLGGAIREHREEIDTVI 77 Query: 67 KPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 + L+ + +V++ +LR+ + E+ +VP++V ++E++ELA F ++ +F+NG Sbjct: 78 SRFSVDWTLDRMSRVDRNILRMGICEILFEPEVPFRVTVDESLELAHQFSEPEAVRFING 137 Query: 126 VLDKAAPVIRPNK 138 +L + + P K Sbjct: 138 ILHRVGTELNPEK 150 >UniRef50_UPI00019779AE transcription antitermination protein NusB n=1 Tax=Helicobacter cinaedi CCUG 18818 RepID=UPI00019779AE Length = 165 Score = 114 bits (286), Expect = 1e-24, Method: Composition-based stats. Identities = 52/134 (38%), Positives = 72/134 (53%), Gaps = 3/134 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 A R +ARE + LY++ L DI D+ E+ +K+ + LL G TN +D Sbjct: 2 ATRTQAREAVIGMLYAYDLGNKDILDIARSMFEEKKIKNKQQDFAFLLLQGAITNLQSID 61 Query: 64 GLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED-SHK 121 + PYL LG +EKAVLR+ YE+ +D V INEAIEL K +G ED + + Sbjct: 62 EAIIPYLKEWDFSRLGGMEKAVLRLGAYEILY-TDTDSPVVINEAIELGKMYGGEDNTPR 120 Query: 122 FVNGVLDKAAPVIR 135 F+NGVLD + R Sbjct: 121 FLNGVLDALSKAHR 134 >UniRef50_C5RAE2 RNA methyltransferase n=3 Tax=Lactobacillales RepID=C5RAE2_WEIPA Length = 456 Score = 114 bits (286), Expect = 1e-24, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 58/131 (44%), Gaps = 2/131 (1%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLM 66 R +V+ L Q + + + D+ + +V ++ GV + L+ + Sbjct: 15 TNPRALSVRVLEKVQ-NGAYSNLQLDSMIKQADLSEKNVHLMTTMVYGVIQHRLTLEYWL 73 Query: 67 KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGV 126 P++ + ++L + +L I+++++ +P +EAI +AK G + + KFV GV Sbjct: 74 IPFIKQP-QKLESWVRELLYISIFQMQYLDKIPDHAIFDEAINIAKRRGHDGTRKFVTGV 132 Query: 127 LDKAAPVIRPN 137 L P+ Sbjct: 133 LHAIQRQGLPD 143 >UniRef50_Q6A8H0 TRNA/rRNA cytosine-C5-methylase n=3 Tax=Propionibacterium acnes RepID=Q6A8H0_PROAC Length = 458 Score = 113 bits (285), Expect = 1e-24, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 4/130 (3%) Query: 5 ARRRA---RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 RR+A R A AL + + L + D + EL+ G + T Sbjct: 8 KRRKADPARRLAYSALLAVETHGAYANLALADHLRAAKLTGRDAAFATELVDGTSRGTGT 67 Query: 62 LDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D +++ R +L + VLR+A +++ VP + A+ +++LA E Sbjct: 68 WDRIIEAASCRAPAKLQPGVRVVLRMAAHQILAM-RVPTRAAVASSVDLAGQVIGERVTG 126 Query: 122 FVNGVLDKAA 131 VN + + + Sbjct: 127 LVNAISRRIS 136 >UniRef50_Q1DCG5 Ribosomal RNA small subunit methyltransferase B n=2 Tax=Cystobacterineae RepID=Q1DCG5_MYXXD Length = 438 Score = 113 bits (285), Expect = 1e-24, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 47/123 (38%), Gaps = 2/123 (1%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFL-AEQDVKDVDVLYFRELLAGVATNTAYLDGLM 66 AR A+Q L + + + V L D EL G LD + Sbjct: 2 NARALAIQVLARVRATDAYLNVVLDTQLSESPPKDPRDAALVTELTYGATRRQLALDYAI 61 Query: 67 KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGV 126 + R L+ L A LRI Y++ + VP + A+ E ++ K G + F N + Sbjct: 62 TRFADRKLDALEDKVLAALRIGAYQIFH-TRVPARAAVAETVQALKEVGLTRAAGFTNAI 120 Query: 127 LDK 129 L K Sbjct: 121 LRK 123 >UniRef50_B4CZF1 Sun protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CZF1_9BACT Length = 410 Score = 113 bits (285), Expect = 1e-24, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 9/131 (6%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 R+ V AL W+ + ++ + L + ++ +D +F E GV N + LD L+ Sbjct: 2 NPRQSCVLALLEWEKGKYFSDEILHTSLEKNPMQPLDRAFFMETFFGVLRNLSRLDFLIG 61 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 + +AVLR+ LY++ A+NE++ L + VN +L Sbjct: 62 QLREGR---IDPQTRAVLRLGLYQIFHM-RTAPHAAVNESVAL-----GGRARGLVNAIL 112 Query: 128 DKAAPVIRPNK 138 +A + Sbjct: 113 RRALREKEALE 123 >UniRef50_C1F543 Putative ribosomal RNA small subunit methyltransferase B n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F543_ACIC5 Length = 440 Score = 113 bits (285), Expect = 1e-24, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 49/122 (40%), Gaps = 1/122 (0%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR A L S ++ + + + D L+ G LD ++ Sbjct: 5 ARRVAFDLLQRMATSDAHSDELL-RTMKVNALAAQDRNLVTTLVLGTLRWQPALDQILLQ 63 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 +L+R + L + +A LR+ ++L VP +N+++EL K + VN VL Sbjct: 64 FLTRPDQRLSEPVRAALRLGAFQLLHLDRVPPHAVLNDSVELVKLSNEAYATGLVNAVLR 123 Query: 129 KA 130 K Sbjct: 124 KV 125 >UniRef50_B6IMS4 Transcription antitermination protein NusB, putative n=1 Tax=Rhodospirillum centenum SW RepID=B6IMS4_RHOCS Length = 179 Score = 113 bits (284), Expect = 2e-24, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 10/135 (7%) Query: 14 VQALYSWQLSQNDIADVEYQFLAEQ--------DVKDVDVLYFRELLAGVATNTAYLDGL 65 VQALY +L +F+ + D F +++ GV A +D L Sbjct: 37 VQALYQIELGGTPSETAIGEFVRHRLGQEIDGDRYVSADPQLFADIVRGVMARQADVDQL 96 Query: 66 MKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 + L L+ + + +A+LR +EL + V + IN+ I++ +F A V Sbjct: 97 VTGVLDRQWGLDRMEPILRAILRAGAWELLGNTGVAPHIVINDYIDVGHAFFAGREPGMV 156 Query: 124 NGVLDKAAPVIRPNK 138 NGVLD+ A +RP + Sbjct: 157 NGVLDRIARQLRPEE 171 >UniRef50_C5WIG1 16S rRNA m(5)C 967 methyltransferase n=44 Tax=Streptococcaceae RepID=C5WIG1_STRDG Length = 452 Score = 113 bits (284), Expect = 2e-24, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 2/123 (1%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 R A+ L Q L+ + + D E++ G + L+ + Sbjct: 21 IRGKALLTLEHIFDQGAYTNIALNQQLSNKALSTKDRALLTEIVYGTVSRKISLEWYLAH 80 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH-KFVNGVL 127 Y+ ++L + +L ++LY+L +P +N+A+ +AK+ G + KFVN +L Sbjct: 81 YVKDR-DKLDKWVYYLLMLSLYQLIYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVNAIL 139 Query: 128 DKA 130 + Sbjct: 140 RQF 142 >UniRef50_Q8DSE9 N utilization substance protein B homolog n=5 Tax=Streptococcus RepID=NUSB_STRMU Length = 142 Score = 113 bits (284), Expect = 2e-24, Method: Composition-based stats. Identities = 39/135 (28%), Positives = 71/135 (52%), Gaps = 4/135 (2%) Query: 5 ARRRARECAVQALYSWQLSQNDIADV-EYQFLAEQDVKDVDVL-YFRELLAGVATNTAYL 62 +RR RE A QAL+S + +++ + + ++ ++ + L+ GV+ + Sbjct: 8 SRRDLRERAFQALFSLEFGGDNLTAARFAYTYDKNEEEEAELPLFLLTLIQGVSDCRREI 67 Query: 63 DGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 D + +L L L ++K++LR+ LYE+ + P +VA+NE IE+AK + E S Sbjct: 68 DKNISIHLKSGWTLSRLTLIDKSLLRLGLYEIKYHKETPERVALNEIIEIAKKYSDEKSS 127 Query: 121 KFVNGVLDKAAPVIR 135 KF+NGVL + + Sbjct: 128 KFINGVLSQFVLERK 142 >UniRef50_UPI0001BC2C1E Fmu (Sun) domain protein n=1 Tax=Brevibacterium linens BL2 RepID=UPI0001BC2C1E Length = 492 Score = 113 bits (283), Expect = 2e-24, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 58/148 (39%), Gaps = 14/148 (9%) Query: 2 KPAARRRA------------RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFR 49 K A RR+ R A + L + + + LA ++ D + Sbjct: 30 KSAPRRQQTEREPRQAKNLPRRIAWEVLVDVETKDSYANLLLPAKLARTHMEPQDAAFTT 89 Query: 50 ELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIE 109 EL G + D ++ +R ++ + A +R+ +++ VP A++E + Sbjct: 90 ELTYGALRQQEFYDAIIARAANRPIDSIDAEPLAGMRLGAHQILSM-RVPDHAALSETVA 148 Query: 110 LAKSFGAEDSHKFVNGVLDKAAPVIRPN 137 + K+ A + FVN VL + + V R Sbjct: 149 VIKT-NAPKTAGFVNAVLRRISEVDRAE 175 >UniRef50_C7H5H8 Ribosomal RNA small subunit methyltransferase B n=2 Tax=Faecalibacterium prausnitzii RepID=C7H5H8_9FIRM Length = 440 Score = 112 bits (282), Expect = 3e-24, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 1/109 (0%) Query: 21 QLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQV 80 Q V L Q ++ D + + V + LD +++ +L + L L Sbjct: 16 QEQDGFSNLVLDAELRRQKLEGRDKAFAGAIFYTVLEHQGTLDFILEQFLPKGLARLDPQ 75 Query: 81 EKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 + +LR AL + VP A+NEA++L ++F + VN VL K Sbjct: 76 VREILRAALAQARYMQ-VPVSAAVNEAVKLTRTFKKASASGLVNAVLRK 123 >UniRef50_A8G3E0 Sun protein (Fmu protein) n=7 Tax=Prochlorococcus marinus RepID=A8G3E0_PROM2 Length = 438 Score = 112 bits (281), Expect = 4e-24, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 1/126 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R+ A + L S + + L +D+ + EL G +LD Sbjct: 8 RKAAWEILLKV-SSGDFSDHALEKVLKNYQFNSLDIAFITELSFGCIRYRKFLDLWTDHT 66 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 ++ + +L I LY+L K +P+ AI+ +E+AK VN +L Sbjct: 67 SKITHKKQPPKLRWLLHIGLYQLLKMDKIPFPAAISTTVEVAKKTDLNGLAGTVNAILRN 126 Query: 130 AAPVIR 135 A+ + Sbjct: 127 ASRKLE 132 >UniRef50_Q2BQD6 Fmu, rRNA SAM-dependent methyltransferase n=1 Tax=Neptuniibacter caesariensis RepID=Q2BQD6_9GAMM Length = 432 Score = 112 bits (281), Expect = 4e-24, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 50/131 (38%), Gaps = 3/131 (2%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLM 66 + R A QAL ++ + E+ D D REL G L+ ++ Sbjct: 3 KNIRTLAAQALTPLLQNKGSLNTKYPAI--ERRCADKDRGLLRELCYGTLRYYPQLNRVL 60 Query: 67 KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGV 126 + +R + +A+ + LY++ + +P AI+E +E K + K +N + Sbjct: 61 QLLQNRPFKYKDIDVRALALVGLYQIQH-TRIPAHAAIHETVEACKELNKPGAAKLLNAI 119 Query: 127 LDKAAPVIRPN 137 L + Sbjct: 120 LRRFQREQDDI 130 >UniRef50_Q03W17 tRNA and rRNA cytosine-C5-methylase n=11 Tax=Lactobacillales RepID=Q03W17_LEUMM Length = 448 Score = 112 bits (281), Expect = 4e-24, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 53/127 (41%), Gaps = 3/127 (2%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 R AVQ L + + Q + + + + D L+ GV + + ++ Sbjct: 10 NPRVLAVQTL-AKIKNGAYSNLQLNQVIKQHKLGEADTRLLTTLVYGVIQHRLTFEYWLE 68 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 P++ +++ + +L A++++ +P NE+IE+AK G + KFV +L Sbjct: 69 PFVGS--KKIDPWVRELLYTAIFQMEYLDKIPQHAIFNESIEVAKILGHVGTGKFVTAIL 126 Query: 128 DKAAPVI 134 + Sbjct: 127 HNISRKG 133 >UniRef50_C9LLB0 Transcription antitermination factor NusB n=1 Tax=Dialister invisus DSM 15470 RepID=C9LLB0_9FIRM Length = 133 Score = 112 bits (280), Expect = 4e-24, Method: Composition-based stats. Identities = 39/130 (30%), Positives = 68/130 (52%), Gaps = 6/130 (4%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +R +ARE A++ LY+ +++ E + + + L+ V + +D Sbjct: 1 MSRSKAREHALKVLYAKEIN---PNTAELSADISDALSEKGKSFSDFLVEQVQLHRDEID 57 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYEL--SKRSDVPYKVAINEAIELAKSFGAEDSH 120 G + +L + L +L V+K +LRIA+ E + KV INEA+ELAK +G E+S+ Sbjct: 58 GEIVRFLKKWSLSQLNIVDKNILRIAIAEFNYTYEDKADRKVIINEAVELAKVYGGENSY 117 Query: 121 KFVNGVLDKA 130 +F+NG+L Sbjct: 118 RFINGILSAV 127 >UniRef50_Q2W4S5 N utilization substance protein B homolog n=3 Tax=Magnetospirillum RepID=NUSB_MAGSA Length = 156 Score = 112 bits (280), Expect = 5e-24, Method: Composition-based stats. Identities = 40/143 (27%), Positives = 65/143 (45%), Gaps = 8/143 (5%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQ------DVKDVDVLYFRELLAGVAT 57 A R AR AVQ LY +++ D + + D D +++ GV+ Sbjct: 9 AKRSAARLAAVQVLYQMEMTGADTERALQDAKDRRAAEPKGRMADPDNSLLNQVVRGVSA 68 Query: 58 NTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG 115 +DG + L +E L V +A++R +ELS R P +V I+E +++A +F Sbjct: 69 QLEDIDGHVGRALSGDWTVERLEAVLRAIVRAGAWELSARPQTPARVCISEWVDVAHAFY 128 Query: 116 AEDSHKFVNGVLDKAAPVIRPNK 138 + VNGVLD A +R + Sbjct: 129 SGPEPGLVNGVLDHLAQTLRGGE 151 >UniRef50_C5RKK7 NusB antitermination factor n=1 Tax=Clostridium cellulovorans 743B RepID=C5RKK7_CLOCL Length = 134 Score = 112 bits (280), Expect = 5e-24, Method: Composition-based stats. Identities = 42/133 (31%), Positives = 73/133 (54%), Gaps = 6/133 (4%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLA-----EQDVKDVDVLYFRELLAGVATN 58 RR+ RE A++ YS + Q D V F ++D+KDVD + +L+G++ N Sbjct: 1 MNRRKTREIAIKLTYSLMIQQIDYKTVIENFKEVEDKEDEDLKDVDFTFVETILSGISEN 60 Query: 59 TAYLDGLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 + + L+ L L + ++ A+L +A+YE+ D+P V+INEA+E+AK + + Sbjct: 61 KSNYEELVSQNLIGWKLNRISKLNLAILLVAIYEIKNIDDIPKAVSINEAVEIAKKYSDD 120 Query: 118 DSHKFVNGVLDKA 130 + F+N +LDK Sbjct: 121 KAPNFINSILDKI 133 >UniRef50_A6DTV7 NusB antitermination factor n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DTV7_9BACT Length = 156 Score = 112 bits (280), Expect = 5e-24, Method: Composition-based stats. Identities = 41/148 (27%), Positives = 69/148 (46%), Gaps = 11/148 (7%) Query: 2 KPAARRRARECAVQALYSWQLSQ-NDIADVEYQFLAEQD---------VKDVDVLYFREL 51 K R R+ A+Q LY +++ + F+ + + + RE+ Sbjct: 6 KRNPRSLGRKWALQYLYQSDIAKLEFQEEEFALFIDQIENAPSAPNEHESSKGFAFAREI 65 Query: 52 LAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIEL 110 + GV +D + ++ + ++ VLRIA++EL + V +NEA+EL Sbjct: 66 IQGVLDKVKEIDAYITEEAKNWKIDRMATTDRNVLRIAVFELMEIKSNHPVVIVNEAVEL 125 Query: 111 AKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 AK+FG DS KFVNG+ D A +RP + Sbjct: 126 AKTFGNTDSFKFVNGIGDTLARKLRPEE 153 >UniRef50_C3WQ58 16S rRNA m(5)C 967 methyltransferase n=15 Tax=Fusobacterium RepID=C3WQ58_9FUSO Length = 435 Score = 112 bits (280), Expect = 5e-24, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 48/129 (37%), Gaps = 5/129 (3%) Query: 11 ECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL 70 + A+ + + ++ + + E+ GV N +LD +++ Sbjct: 5 QVAINLISQVD-KGAYSNIALNETFKTLNINSKEKAFITEIFYGVIRNKKFLDYIIEKNT 63 Query: 71 SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 E + + +LRI++Y+++ K + EA ELAK KF+NG L Sbjct: 64 K---EIKKEWIRNLLRISIYQITFMDS-DNKGVVWEATELAKKKYGVPISKFINGTLRNY 119 Query: 131 APVIRPNKK 139 K Sbjct: 120 LRNKDSELK 128 >UniRef50_A8YVW1 rRNA methylase n=27 Tax=Lactobacillus RepID=A8YVW1_LACH4 Length = 454 Score = 112 bits (280), Expect = 5e-24, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 59/142 (41%), Gaps = 6/142 (4%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 K + + AR +++ L + + L D+ D ++ G + Sbjct: 12 KLSTNKSARAISLETLIKVLQNGSYSNISLNNSLKHSDLSIADQNLATRIVYGTIQYRLF 71 Query: 62 LDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 L+ + L + + K +L ++LY++ VP + ++EA +LAK FG S Sbjct: 72 LEYQLTGLLKTKI--TEKYLKPLLLMSLYQIIFLDKVPNRAVLDEANKLAKQFGKHHSSG 129 Query: 122 F--VNGVLDKAAPV--IRPNKK 139 + VNG+L I P++K Sbjct: 130 YRVVNGILRAFIRRGVILPDEK 151 >UniRef50_C6XHS5 Transcription antitermination protein NusB n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XHS5_LIBAP Length = 170 Score = 111 bits (279), Expect = 6e-24, Method: Composition-based stats. Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 14/148 (9%) Query: 2 KPAARR-RARECAVQALYSWQLSQNDIADVEYQ-----FLAEQDVKDV------DVLYFR 49 K + RR AR AVQALY + ++ + F A+ ++ D+ +FR Sbjct: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70 Query: 50 ELLAGVATNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEA 107 ++ GV ++D L+ L L + ++LR + EL + VP +V I+E Sbjct: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130 Query: 108 IELAKSFGAEDSHKFVNGVLDKAAPVIR 135 + +A F D KF+N VLDK + Sbjct: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEE 158 >UniRef50_O66530 N utilization substance protein B homolog n=3 Tax=Aquificaceae RepID=NUSB_AQUAE Length = 148 Score = 111 bits (279), Expect = 6e-24, Method: Composition-based stats. Identities = 33/129 (25%), Positives = 63/129 (48%), Gaps = 2/129 (1%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDV-LYFRELLAGVATNTAYLDG 64 R+ AR+ A LY W L + ++ + + E+++K+ D Y ++L+ + +D Sbjct: 4 RKGARDTAFLVLYRWDLRGENPGELFKEVVEEKNIKNKDAYEYAKKLVDTAVRHIEEIDS 63 Query: 65 LMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 +++ +L ++ LG VE+ LR+ + EL + ++L K + E + KFV Sbjct: 64 IIEKHLKGWSIDRLGYVERNALRLGVAELIFLKSKEPGRVFIDIVDLVKKYADEKAGKFV 123 Query: 124 NGVLDKAAP 132 NGVL Sbjct: 124 NGVLSAIYK 132 >UniRef50_D1VSE3 Ribosomal RNA small subunit methyltransferase B n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSE3_9FIRM Length = 430 Score = 111 bits (279), Expect = 6e-24, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 59/129 (45%), Gaps = 1/129 (0%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 R+ A+ + + + + + + ++ D D + + + GV N YLD ++K Sbjct: 3 NIRQKALFIIDNVYNKGAFLEEQLN-IIKQSNISDRDFTFIKNITTGVIRNRTYLDYVIK 61 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 +++ ++ +L +A+Y+ +P ++E+++LAK +G + S FVN +L Sbjct: 62 INSKIRFKKIHKIIAIILEMAIYQYYFLDKIPNYSIVDESVKLAKLYGNKGSSSFVNAIL 121 Query: 128 DKAAPVIRP 136 + Sbjct: 122 RNIVSKDKE 130 >UniRef50_C0EFY5 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EFY5_9CLOT Length = 132 Score = 111 bits (279), Expect = 7e-24, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 7/136 (5%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLA--EQDVKDVDVLYFRELLAGVATNTAY 61 R + RE A ++ + +D+++V E +V + F GV + + Sbjct: 1 MKRHQMRENAFILVFEKIFNDDDVSEVIAAAEECGEFEVNSDVIALFT----GVQQHISE 56 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD L+ +L++ + L +V A+LR+A+YE+ V +AINEA+ELAK + ++ Sbjct: 57 LDRLISEHLTKWNITRLSKVILAILRLAVYEIVYVERVEAPIAINEAVELAKEYATQEDA 116 Query: 121 KFVNGVLDKAAPVIRP 136 FVNGVL Sbjct: 117 AFVNGVLGSFVRAAEK 132 >UniRef50_Q8EKR0 Ribosomal RNA small subunit methyltransferase B n=20 Tax=Gammaproteobacteria RepID=RSMB_SHEON Length = 428 Score = 111 bits (278), Expect = 8e-24, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 47/129 (36%), Gaps = 2/129 (1%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 R A +A++ ++ + D EL GV ++ Sbjct: 2 NLRALAAKAIFDVLEKGVSLSVALPEQQKHLA-SGKDKALLAELCYGVMRTLPQIEKRTA 60 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 L++ L+ ++ +L + Y+L + +P AI+E E + E K VNGVL Sbjct: 61 ECLAKPLKGKQRIIHQLLIVGCYQL-YFTRIPSHAAISETAEACRQLKFEGMVKVVNGVL 119 Query: 128 DKAAPVIRP 136 + P Sbjct: 120 RNIQRQLTP 128 >UniRef50_C1A605 Putative rRNA methyltransferase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A605_GEMAT Length = 428 Score = 111 bits (278), Expect = 8e-24, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 41/104 (39%) Query: 35 LAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSK 94 + D + +EL+ GV + LD ++ + L L +LR+ Y+L Sbjct: 13 RRTPTLDARDRRWVQELVWGVLRHRERLDAILATRIRGGLSVLDDGVLDILRLGTYQLLS 72 Query: 95 RSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 VP AI +++E K + K VN VL + + Sbjct: 73 MDSVPPYAAIGQSVEAVKRKHGIGAGKLVNAVLRRIDRERATIE 116 >UniRef50_B9E100 N utilization substance protein B homolog n=14 Tax=Clostridium RepID=NUSB_CLOK1 Length = 156 Score = 111 bits (278), Expect = 8e-24, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 21/153 (13%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAE--------------------QDVKDV 43 R++ RE ++ L+ +++ + D+K++ Sbjct: 1 MNRKKTRELTMKLLFQMAINKEKADVIISNLKENIEMEQGSQKNSISQIYGENMGDLKNI 60 Query: 44 DVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKV 102 D+ Y +L G+ N L+ ++ YL L L +V+ A+L+I YE D+P KV Sbjct: 61 DIDYVVRVLRGIEKNEDMLNIEIEKYLRNWKLNRLSKVDSAILKICTYEFLHEDDIPEKV 120 Query: 103 AINEAIELAKSFGAEDSHKFVNGVLDKAAPVIR 135 +INEAIELAK + +E S F+NGVL + Sbjct: 121 SINEAIELAKKYSSEKSASFINGVLGNMIKDEK 153 >UniRef50_A3UCC3 Transcription antitermination protein NusB n=1 Tax=Oceanicaulis alexandrii HTCC2633 RepID=A3UCC3_9RHOB Length = 158 Score = 111 bits (278), Expect = 8e-24, Method: Composition-based stats. Identities = 41/133 (30%), Positives = 59/133 (44%), Gaps = 10/133 (7%) Query: 14 VQALYSWQLSQNDIADVEYQFLAEQ--------DVKDVDVLYFRELLAGVATNTAYLDGL 65 VQALY + S + V +F + D + D +F L+ G+ + A +D Sbjct: 25 VQALYQMETSGSGAKAVVKEFRDHRFGYEDEPGDYVETDEDFFENLVTGIVSIQADVDKR 84 Query: 66 MKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 + L L L +A+LR YEL R DVP V INE +++A +F FV Sbjct: 85 ISGVLKEGWKLSRLDATVRAILRAGGYELIARKDVPPAVVINEYVDVAHAFFEGTEPGFV 144 Query: 124 NGVLDKAAPVIRP 136 N LD A +R Sbjct: 145 NATLDALAKQVRD 157 >UniRef50_C6QHP1 NusB antitermination factor n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QHP1_9RHIZ Length = 170 Score = 111 bits (278), Expect = 8e-24, Method: Composition-based stats. Identities = 42/135 (31%), Positives = 72/135 (53%), Gaps = 10/135 (7%) Query: 14 VQALYSWQLSQNDIADVEYQFL--------AEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 VQALY ++ D+ DV +FL ++ + D ++F ++L V +D + Sbjct: 23 VQALYQMDMAGTDLNDVIAEFLNERLSGDNRDEMLAGADRVFFADILRAVVRRQREIDPM 82 Query: 66 MKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 + L+ L + + +A+LR + EL R DVP +VAI+E + +A+ F E+ + V Sbjct: 83 IDEQLAVGWRLVRVDSILRAILRGGVAELVDRYDVPARVAISEYVNVARVFFDEEEPRVV 142 Query: 124 NGVLDKAAPVIRPNK 138 NGVLDK A +R ++ Sbjct: 143 NGVLDKLARRLRTSE 157 >UniRef50_B5YF43 Ribosomal RNA small subunit methyltransferase B n=2 Tax=Dictyoglomus RepID=B5YF43_DICT6 Length = 430 Score = 111 bits (278), Expect = 8e-24, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 50/129 (38%), Gaps = 3/129 (2%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 R A + LY + + + + L ++ + + EL+ GV LD + Sbjct: 2 EVRLKAAEILYDLEKREAYLNLLLRSRLPSYNLSLKEKHFITELVYGVTRWKTTLDYIWS 61 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 ++ R + L + +LR+ Y + D +A+NE +E+AK K +N V Sbjct: 62 RFVKR--DNLSLFGRILLRLVAYHIYFLKDTILPIAVNEIVEIAKRKV-PKEAKLINAVS 118 Query: 128 DKAAPVIRP 136 + Sbjct: 119 RRMVKERNN 127 >UniRef50_A4BK87 Putative uncharacterized protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BK87_9GAMM Length = 427 Score = 111 bits (278), Expect = 8e-24, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 46/129 (35%), Gaps = 3/129 (2%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLM 66 R A + L + D + L + + ++L+ G LD L+ Sbjct: 2 TNTRLIAAEILLQVVDEGRSLNDELPRRLKH--IDPDQQAFLQQLVYGSTRYYFALDELI 59 Query: 67 KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGV 126 + + + ++ +L I LY+L DV AINE +E + + + VN Sbjct: 60 NLLVEKPIRGKERLVHMLLAIGLYQLWHL-DVAEHAAINETVEATLTAKKQWAKNLVNAS 118 Query: 127 LDKAAPVIR 135 L + Sbjct: 119 LRRFQRERE 127 >UniRef50_Q2NQQ2 Ribosomal RNA small subunit methyltransferase B n=264 Tax=Bacteria RepID=RSMB_SODGM Length = 433 Score = 111 bits (278), Expect = 9e-24, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 52/136 (38%), Gaps = 5/136 (3%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK R A +A+ + + + + + D +EL G+ Sbjct: 1 MKTH--YNLRVIAARAVAQVLDQGQSLGALLPPL--QAPLSEKDRALLQELCFGIMRVLP 56 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 L+ L++ +++ L + +L + LY+L+ + +P A+ E +E A + Sbjct: 57 QLEWLLRQLMAKPLTGKQRPVHYLLMVGLYQLTY-TRIPPHAALAETVEGAVAMKRPQFK 115 Query: 121 KFVNGVLDKAAPVIRP 136 +NGVL + Sbjct: 116 GLINGVLRQFQRQQPA 131 >UniRef50_C6BVK4 NusB/RsmB/TIM44 n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BVK4_DESAD Length = 427 Score = 110 bits (277), Expect = 1e-23, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 47/133 (35%), Gaps = 6/133 (4%) Query: 4 AARRRA----RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNT 59 + + R A + + D V L + D + E+L G Sbjct: 1 MKKTNSLPGPRGVAYECVTRSLDGGADAQAVLDNALTAAKLDGRDRGFVTEILYGYLRMR 60 Query: 60 AYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 L ++ +LSR + L VL +A YE+ DVP +++ ++ AK Sbjct: 61 LRLQSVLNCFLSRP-DGLPAPILRVLGMAAYEILHM-DVPAYASVDWGVDSAKRLSRGKL 118 Query: 120 HKFVNGVLDKAAP 132 N VL K A Sbjct: 119 GGLANAVLRKVAR 131 >UniRef50_C0XM65 rRNA SAM-dependent methyltransferase RmsB n=3 Tax=Lactobacillus RepID=C0XM65_LACHI Length = 444 Score = 110 bits (277), Expect = 1e-23, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 3/134 (2%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK RE AV+ L + + + DVD F ++ GV + Sbjct: 1 MKYQT-NNPRELAVRTLLR-TSGGSYSNLQINAVIESTSMSDVDKALFTNIVYGVIQHRM 58 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 L+ + P+L + K +L A+Y+L VP + +E+I++AKS G + + Sbjct: 59 TLEYQLVPFLKDSEKTED-WVKELLYTAMYQLEYLDRVPKRAIFDESIKIAKSMGHDGTR 117 Query: 121 KFVNGVLDKAAPVI 134 +FV G+L + Sbjct: 118 RFVTGILHQMDRKG 131 >UniRef50_B1C650 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C650_9FIRM Length = 132 Score = 110 bits (277), Expect = 1e-23, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 2/132 (1%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 R AR+ + ++ + Q + + +K Y ++ + G+ N +D Sbjct: 1 MKRDVARDLVYKIIFQINFHDDFAER-YEQMILDSGIKGTQGEYAKKTVKGILDNLEEID 59 Query: 64 GLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 +K L E L AVLR+ ++E+ D+P V +NEA+ LA ++ E F Sbjct: 60 DTIKDNLKGWKFERLSTHVIAVLRLGVFEIMYNEDIPPLVGLNEAVSLAHTYSDEKEATF 119 Query: 123 VNGVLDKAAPVI 134 VNG+L+ + Sbjct: 120 VNGLLNSVYKKV 131 >UniRef50_D2L7S0 NusB/RsmB/TIM44 n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L7S0_9DELT Length = 451 Score = 110 bits (276), Expect = 1e-23, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 53/140 (37%), Gaps = 13/140 (9%) Query: 9 ARECAVQALYSWQLSQ-----------NDIADVEYQFLA-EQDVKDVDVLYFRELLAGVA 56 AR+ A+ L ++ D+ LA + + D EL+ G Sbjct: 12 ARKLALAVLGRVFPAKGAARGPGPGGGQDVQAALDTALAGTKGLDPRDRGLATELVYGYL 71 Query: 57 TNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 +D ++ +L + E + + VL +A+YE+ S VP +++ A+ + Sbjct: 72 RLCGRIDWMLSRFLKKP-EAVPLPVRRVLGLAVYEILYCSRVPAYASVDWAVSAVRRLSG 130 Query: 117 EDSHKFVNGVLDKAAPVIRP 136 + N VL + A + Sbjct: 131 KGLGGMANAVLRRVAADPKA 150 >UniRef50_Q057F3 N utilization substance protein B homolog n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=NUSB_BUCCC Length = 142 Score = 110 bits (276), Expect = 1e-23, Method: Composition-based stats. Identities = 59/139 (42%), Positives = 88/139 (63%), Gaps = 2/139 (1%) Query: 1 MKPAARRRARECAVQALYSWQLSQND-IADVEYQFLAEQDVKDVDVLYFRELLAGVATNT 59 MK + RR+ARE A+Q LYSWQ+S+ + + E + + +D +YF +++ GV N Sbjct: 1 MK-SKRRKARELAIQVLYSWQISKKIVLFETEKYVIEQNKKYSLDKIYFHKIVTGVIKNI 59 Query: 60 AYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 Y+D ++K +S+ L +E+A+LR+A YE+ KR D+PYKV INE IELAK +G+ S Sbjct: 60 FYIDKIIKKNISKKKNRLDYIEQAILRLASYEIIKRLDIPYKVIINEGIELAKIYGSNKS 119 Query: 120 HKFVNGVLDKAAPVIRPNK 138 HKF+N +LDK K Sbjct: 120 HKFINSILDKIITNKNNIK 138 >UniRef50_C0GN53 NusB/RsmB/TIM44 n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GN53_9DELT Length = 417 Score = 110 bits (276), Expect = 2e-23, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 45/123 (36%), Gaps = 2/123 (1%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R A+ + D+ V + L + ++ D EL G LD ++ + Sbjct: 8 RAVALNVVLDALRPGRDLQMVLDRNL-DPEMDLRDRSLATELAYGYLRYKGRLDFVLNCF 66 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 L L + ++ +A YE+ +P A++ A+ L + VN VL K Sbjct: 67 LKSP-AGLSGKIRVLMGLAAYEIFFLERIPDYAAVSRAVALTRKRFGSRMSSLVNAVLRK 125 Query: 130 AAP 132 Sbjct: 126 CCR 128 >UniRef50_C2KVE0 Possible rRNA (Cytosine-5-)-methyltransferase n=1 Tax=Oribacterium sinus F0268 RepID=C2KVE0_9FIRM Length = 449 Score = 110 bits (276), Expect = 2e-23, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 47/121 (38%), Gaps = 1/121 (0%) Query: 20 WQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELG 78 I + ++ + + + + G+ LD ++ Y S L++L Sbjct: 56 VFYEGEFIHLALRKLFSDYPGLGNREKAFLTRSSHGILERYLQLDYVISLYSSVKLKKLK 115 Query: 79 QVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 V LRIA+Y+L +P ++EA++ K + FVN VL K K Sbjct: 116 PVVLLSLRIAIYQLLFMDKIPEHAIVDEAVKSIKKRKLQGLVPFVNAVLRKIVGEKEEIK 175 Query: 139 K 139 K Sbjct: 176 K 176 >UniRef50_A5CWS4 N utilization substance protein B n=2 Tax=sulfur-oxidizing symbionts RepID=A5CWS4_VESOH Length = 141 Score = 110 bits (275), Expect = 2e-23, Method: Composition-based stats. Identities = 52/136 (38%), Positives = 82/136 (60%), Gaps = 1/136 (0%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 ++R RE +QALY + +S ++ +E QFL ++ + ++F +L + N L Sbjct: 4 KTPKQRTRERVIQALYQYLVSGGEVFQIEQQFLNQKQ-GKISKVFFSDLFINILENRFVL 62 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 D L+ +SR EELG VE ++L + +EL S+VPYKV INE++ LAK +GAE S+K Sbjct: 63 DELITSTISRGTEELGSVEHSILYLGTFELKFNSEVPYKVVINESLALAKLYGAEGSYKL 122 Query: 123 VNGVLDKAAPVIRPNK 138 +N LDK A ++R + Sbjct: 123 INVSLDKLARILRKIE 138 >UniRef50_A5EWM0 RRNA SAM-dependent methyltransferase, Fmu n=2 Tax=Cardiobacteriaceae RepID=A5EWM0_DICNV Length = 418 Score = 110 bits (275), Expect = 2e-23, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 52/129 (40%), Gaps = 4/129 (3%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 +ARE A + L++ + + + F + + D+D ++EL+ G L L Sbjct: 2 KAREAAARTLFAVIEQRQSLNQLLPAF--KNQLPDIDRALYQELVYGTLREYRSLSFLHN 59 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 L + L+ + +L + +Y+L + + + ++E +EL K N VL Sbjct: 60 RLLHQPLD-KNPLPAIILNLGIYQLLRLT-LGDHGVVHETVELCKKLRCPAVSGLTNAVL 117 Query: 128 DKAAPVIRP 136 + Sbjct: 118 RRVQRERSA 126 >UniRef50_A6VR79 Sun protein n=2 Tax=Marinomonas RepID=A6VR79_MARMS Length = 462 Score = 110 bits (275), Expect = 2e-23, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 57/136 (41%), Gaps = 3/136 (2%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 K ++ AR+ A++ + + L Q ++ + + DV +EL GV Sbjct: 16 KSTGQQSARQVAIKVITNILLQQGSLSTQLARH--QLDVASEHAPMLKELCFGVCRQYPR 73 Query: 62 LDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 L+ + L+ EE AVL + LY+L+ + P A+NE +E + + + K Sbjct: 74 LNSIALHLLAHPFEEKDTDLYAVLLLGLYQLTYM-NTPDHAAVNETVEACRILNKDWATK 132 Query: 122 FVNGVLDKAAPVIRPN 137 +N VL + Sbjct: 133 LMNAVLRRYQREADDI 148 >UniRef50_C0VVY3 Possible rRNA SAM-dependent methyltransferase RmsB n=1 Tax=Corynebacterium glucuronolyticum ATCC 51867 RepID=C0VVY3_9CORY Length = 470 Score = 110 bits (275), Expect = 2e-23, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 40/114 (35%), Gaps = 5/114 (4%) Query: 20 WQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQ 79 + + E + D + E+ G LD ++ SR + EL Sbjct: 1 MFNDGAYGNIALPREITEAGLSGRDAAFATEIGYGTMRMVGVLDEIIGSCSSRPMSELDP 60 Query: 80 VEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPV 133 + LR+ +Y+L + V A++ ++ L + FVN +L Sbjct: 61 IVLNALRMGIYQLLY-TRVEDHAAVDTSVRLV----PQRVKGFVNAILRAVQKK 109 >UniRef50_D2R650 NusB antitermination factor n=2 Tax=Planctomycetaceae RepID=D2R650_9PLAN Length = 136 Score = 110 bits (275), Expect = 2e-23, Method: Composition-based stats. Identities = 52/135 (38%), Positives = 73/135 (54%), Gaps = 3/135 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVD-VLYFRELLAGVATNTAYL 62 A R RARE +Q LY L+ + V FL + DV+ V + R+LL GV L Sbjct: 2 ARRSRAREVVLQILYEDDLNPDRSIAVSDVFLRRRLGDDVELVDFARDLLRGVRGRRKEL 61 Query: 63 DGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D L++ L+ + ++ VLR+ YE+ + P +VAINEA+ELAK FGA S + Sbjct: 62 DVLLQQKADHWTLDRMAVTDRNVLRLGAYEILH-TQTPQRVAINEAVELAKRFGARQSPQ 120 Query: 122 FVNGVLDKAAPVIRP 136 FVNG+LD+ R Sbjct: 121 FVNGILDRFLQKKRD 135 >UniRef50_A1V9B6 NusB/RsmB/TIM44 n=3 Tax=Desulfovibrio vulgaris RepID=A1V9B6_DESVV Length = 507 Score = 110 bits (275), Expect = 2e-23, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 49/124 (39%), Gaps = 1/124 (0%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR A+ AL + + D+ L+ + D EL+ G + L L++ Sbjct: 36 ARAGALVALDAVVRAGVDVQAALDDSLSHASLSRQDAALCTELVYGYLRSEIRLSWLVRR 95 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 +L +L A+L +A YEL++ VP ++ A+ ++ + N VL Sbjct: 96 FLKAP-SKLPPGVLALLCLAAYELTQCDRVPAYATLDWAVSAVRALYGTGVSRLANAVLR 154 Query: 129 KAAP 132 Sbjct: 155 NVDR 158 >UniRef50_UPI0001C3796F transcription termination factor n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C3796F Length = 138 Score = 109 bits (274), Expect = 2e-23, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 66/136 (48%), Gaps = 3/136 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +RR R+ A + ++ L +DI ++ ++ D ++++ G + LD Sbjct: 1 MSRREIRDSAFKLVFEQLLRDDDITELYDIAEEIDEIIVNDE--VKKIVEGTLAHAEELD 58 Query: 64 GLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ Y R L + ++ A+LRIA+YE + P AI+EAI LA ++ + KF Sbjct: 59 SIIAGYSKSRSLSRISKLNIAILRIAIYESLYDDNTPMNAAISEAINLANTYSYNEDSKF 118 Query: 123 VNGVLDKAAPVIRPNK 138 +NGVL + + + Sbjct: 119 INGVLGAFSRDQKQKE 134 >UniRef50_C7GZX3 16S rRNA M(5)C 967 methyltransferase n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZX3_9FIRM Length = 461 Score = 109 bits (274), Expect = 3e-23, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 5/131 (3%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 + R A ALY+ + + + + + + + REL+ G LD M Sbjct: 9 KKRLAAFWALYNIE-KGKYSNVAFEE--STKGLSAREAAFVRELVFGTLKLNIKLDHAMN 65 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 +L + ++ +LR+ LY+L VP A+NE I +AK +N +L Sbjct: 66 -HLKDKKARIKLKDRILLRLGLYQLDYMDSVPDYAAVNETIAIAKKLVKNK-VGLINAIL 123 Query: 128 DKAAPVIRPNK 138 + + Sbjct: 124 RGYIRKRQEIE 134 >UniRef50_C5NYK7 Transcription antitermination factor NusB n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NYK7_9BACL Length = 131 Score = 109 bits (274), Expect = 3e-23, Method: Composition-based stats. Identities = 40/135 (29%), Positives = 73/135 (54%), Gaps = 9/135 (6%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK +R RE + L+ + ++ D ++ L ++++ Y + L + Sbjct: 1 MK--SRHELREAVFKILFQVENTELDFIELLD--LEQEEISTSI--YVNKTLTEILEKKE 54 Query: 61 YLDGLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG-AED 118 +D ++ L LE L ++++ +LRI+ YE+ SD+PYKV+INEA+EL+K + ++ Sbjct: 55 EIDEIISNNLKDWKLERLSKMDRQILRISAYEILY-SDIPYKVSINEAVELSKKYSEKDE 113 Query: 119 SHKFVNGVLDKAAPV 133 S+KF+NGVL Sbjct: 114 SYKFINGVLKGIVEN 128 >UniRef50_B5JST2 Ribosomal RNA small subunit methyltransferase B n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JST2_9GAMM Length = 431 Score = 109 bits (273), Expect = 3e-23, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 49/129 (37%), Gaps = 4/129 (3%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 AR+ A++A+ S Q ++ LA + D +EL G + L + Sbjct: 2 NARQQALRAITSVQQ-GQSLSAALPDLLA--PLPKRDRGLCQELSYGSLRYYHRYEWLSQ 58 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 L + + +AVL + LY+L + +P A++ + L + +N VL Sbjct: 59 QLLKKPFKHKDSDLQAVLALGLYQLFEM-RIPDHAAVSNTVALVNGLKKSWAKGVINAVL 117 Query: 128 DKAAPVIRP 136 A Sbjct: 118 RNALRQRDE 126 >UniRef50_Q2J830 N utilization substance protein B homolog n=3 Tax=Frankia RepID=NUSB_FRASC Length = 135 Score = 109 bits (273), Expect = 3e-23, Method: Composition-based stats. Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 3/112 (2%) Query: 22 LSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQV 80 + + + ++ LA+ Y EL+ GV +D + Y LE + V Sbjct: 1 MRASAVPEILAARLAQS--DPPVSEYAVELVEGVVERRGEIDERIARYAEGWTLERMPPV 58 Query: 81 EKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAP 132 ++ +LRIA+ EL R DVP +VAI+EA+ELAK+ S FVNG+L Sbjct: 59 DRNILRIAVLELLWRPDVPDRVAIDEAVELAKNLSTHRSPAFVNGLLASLVE 110 >UniRef50_Q1J0I4 N utilization substance protein B homolog n=3 Tax=Deinococcus RepID=NUSB_DEIGD Length = 169 Score = 109 bits (273), Expect = 3e-23, Method: Composition-based stats. Identities = 36/145 (24%), Positives = 68/145 (46%), Gaps = 10/145 (6%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAE--------QDVKDVDVLYFRELLAGV 55 RR ARE A + L+ + + + V + + + + + R+L+ G+ Sbjct: 13 GTRRAAREFAFRVLFEAERGKLPLETVFTRAEGDMREGDDTFAQLNAEALAFARQLVDGL 72 Query: 56 ATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 A +D ++ + E++ Q + VLR+A YE+ + P+ I A+ +A+ F Sbjct: 73 GERRADVDAALRRTIRGWDFEQMAQTDLNVLRLATYEMLYTPE-PHPPVIESAVRIARKF 131 Query: 115 GAEDSHKFVNGVLDKAAPVIRPNKK 139 G EDS +FVNGVL + ++ + Sbjct: 132 GGEDSGRFVNGVLGGLSRSLKTAPR 156 >UniRef50_C7RA09 Sun protein n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RA09_KANKD Length = 443 Score = 109 bits (273), Expect = 4e-23, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 51/130 (39%), Gaps = 4/130 (3%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLM 66 ++ R+ A AL++ DV EQ D FR L+ G L+ + Sbjct: 13 QQLRQQACLALHAIAFEGRSANDVLNSIQFEQG---SDNSLFRALVLGSCRYFIRLESIA 69 Query: 67 KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGV 126 K L + + Q ++ I LY+L S VP AI+E + + + + K VNGV Sbjct: 70 KQLLQKPFKPKDQDLLCLIIIGLYQLEY-SRVPDHAAISETVSVCEQLKKPWATKLVNGV 128 Query: 127 LDKAAPVIRP 136 L Sbjct: 129 LRNFVRQQPE 138 >UniRef50_Q0BTF1 N utilization substance protein B homolog n=11 Tax=Acetobacteraceae RepID=NUSB_GRABC Length = 163 Score = 108 bits (272), Expect = 4e-23, Method: Composition-based stats. Identities = 39/152 (25%), Positives = 65/152 (42%), Gaps = 15/152 (9%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQF-------------LAEQDVKDVDVLYF 48 + R +R AVQAL+ + +Q + V QF + + D +V F Sbjct: 4 RTRPRTASRVAAVQALFQGEQAQESLEAVIEQFVRFRLGALPGQDGFEDGRIPDAEVPLF 63 Query: 49 RELLAGVATNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINE 106 ++ +D L+ L L L V +A+LR EL + P +V INE Sbjct: 64 SRIVRAATKEQDVIDPLLITALPAEWPLARLDPVLRALLRAGACELRMKDGPPPRVVINE 123 Query: 107 AIELAKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 +++A F + + VNG+L+ A +RP + Sbjct: 124 YLDIAHGFFQGEEPRMVNGILNALARQLRPEE 155 >UniRef50_UPI0001BC31DE NusB antitermination factor n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=UPI0001BC31DE Length = 142 Score = 108 bits (272), Expect = 4e-23, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 66/142 (46%), Gaps = 13/142 (9%) Query: 4 AARRRARECAVQALYSWQLSQNDI-----ADVEYQFLAEQDVKDV----DVLYFREL--- 51 R RE + L+ ++ ++ ++ D ++ D E+ Sbjct: 1 MNRTALRETVFKVLFRYEFHDSESFAGQMNLFFAEYPESGDEEENWPALDSKSAEEITGK 60 Query: 52 LAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIEL 110 + + + +D ++ ++ +G+ E +++RIA+YE+ ++ V+I+EA++L Sbjct: 61 VTDILCHIDEIDKVISEKSEGWDIDRIGKAELSIMRIAVYEILYDDNIENAVSISEAVKL 120 Query: 111 AKSFGAEDSHKFVNGVLDKAAP 132 AK +G E ++ FVNGVL K Sbjct: 121 AKKYGDEKAYGFVNGVLAKIVK 142 >UniRef50_A9KMC2 N utilization substance protein B homolog n=17 Tax=Bacteria RepID=NUSB_CLOPH Length = 132 Score = 108 bits (272), Expect = 5e-23, Method: Composition-based stats. Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 3/131 (2%) Query: 4 AARRRARECAVQALYSWQLSQ--NDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 RR RE + L+ + + V + F + + + Y + Sbjct: 1 MTRREIREHLFRMLFRKEFHEPTELEEQVLFYFDSLESITPEQQEYLNVRFDKINEKLGE 60 Query: 62 LDGLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D ++ S L +G+V+ ++R+A +E+ +VP KVAINEAIELAK +G + S Sbjct: 61 IDTILANASSGWKLNRMGKVDLNIMRLATFEIRFDDEVPVKVAINEAIELAKKYGGDSSA 120 Query: 121 KFVNGVLDKAA 131 FVNG+L K Sbjct: 121 SFVNGILAKVI 131 >UniRef50_B8KLT3 Ribosomal RNA small subunit methyltransferase B n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KLT3_9GAMM Length = 433 Score = 108 bits (272), Expect = 5e-23, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 47/136 (34%), Gaps = 6/136 (4%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MKP A R CA + + L + + L + D RE+ G Sbjct: 1 MKPGA--AVRACAARIIAEV-LRGDSLDRALESHLTI--LPGRDQPLCREICFGTLRQYP 55 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD L+ L + L + A+ LY+L+ +P A++ ++ A Sbjct: 56 RLDALLGQLLQKPLRAKDRDVHALALAGLYQLTSM-RIPAHAAVSATVDAATVLKKRQLS 114 Query: 121 KFVNGVLDKAAPVIRP 136 +N VL + Sbjct: 115 GLLNAVLRRFQREEEA 130 >UniRef50_Q72JL6 N utilization substance protein B homolog n=3 Tax=Thermus RepID=NUSB_THET2 Length = 151 Score = 108 bits (271), Expect = 5e-23, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 70/143 (48%), Gaps = 11/143 (7%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAE---------QDVKDVDVLYFRELLAGVA 56 RRRARE A++AL++ + + + L E + + V + R LL+G Sbjct: 2 RRRARELAMRALFAHTVGGMGLEEAFQHALEEMGGEEEGYAEPLDQEGVAFARRLLSGYK 61 Query: 57 TNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG 115 + +D +++ + ++ + + AVLR+A+YE+ P++ I A+++A +G Sbjct: 62 AHQEEVDRVLEETVEGWDFRQMAKTDLAVLRLAVYEMLYEP-TPFEPLIEVAVKIANRYG 120 Query: 116 AEDSHKFVNGVLDKAAPVIRPNK 138 E S FVNGVL + + + Sbjct: 121 GEHSGSFVNGVLARVYRRVAAGE 143 >UniRef50_B3ERI6 Putative uncharacterized protein n=1 Tax=Candidatus Amoebophilus asiaticus 5a2 RepID=B3ERI6_AMOA5 Length = 378 Score = 108 bits (271), Expect = 6e-23, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 63/123 (51%), Gaps = 1/123 (0%) Query: 13 AVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSR 72 V+ L LS++DI + + + ++ +L+A ++D L++ ++ Sbjct: 256 VVKKLLHELLSKSDIELLVKEIEDAMQIGTNAASFYDKLIATALEQEKFIDNLIQQHIKN 315 Query: 73 L-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAA 131 +E +++ ++++ L E+ +P KVAINE ++LAK + S KF+NGVLD A Sbjct: 316 WSIERTVLLDRIIIKMGLCEMKYFDSIPTKVAINEYVDLAKKYSTAKSSKFINGVLDTIA 375 Query: 132 PVI 134 I Sbjct: 376 KTI 378 >UniRef50_C5SLV1 NusB antitermination factor n=2 Tax=Caulobacteraceae RepID=C5SLV1_9CAUL Length = 177 Score = 108 bits (271), Expect = 6e-23, Method: Composition-based stats. Identities = 45/146 (30%), Positives = 68/146 (46%), Gaps = 15/146 (10%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFL-------------AEQDVKDVDVLYFREL 51 AR AR VQALY +++ + V +F EQ + D +F + Sbjct: 32 ARTVARLVLVQALYQMEIAGTGVESVIREFADFRFDGNIEGECGEEQRLGTADEAFFADG 91 Query: 52 LAGVATNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIE 109 L + A +D L+ L + L+ + +A+LR +EL R DV +V INE +E Sbjct: 92 LRTIVKAQAEIDVLIAERLASNWRLDRIDTTLRAILRAGAWELKFRPDVAVEVVINEYVE 151 Query: 110 LAKSFGAEDSHKFVNGVLDKAAPVIR 135 +AK+F + +FVNG LD A R Sbjct: 152 IAKAFFGNEEARFVNGALDGIAKDAR 177 >UniRef50_D0MH27 Sun protein n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MH27_RHOM4 Length = 453 Score = 108 bits (270), Expect = 7e-23, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 2/127 (1%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR AV+ L + Q + + L ++ + E +AGV +LD L+ Sbjct: 14 ARREAVRLLERIENDQAYVNRLMSAGLTDELEPEAGRR-ATEYVAGVTRWRRWLDFLLAQ 72 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 + + + +LR+ LYEL +D P A+NEA+ELA+ + VN VL Sbjct: 73 NYRGRYDSMEPRLRQILRLGLYELLF-TDTPPYAALNEAVELARRLVRPQAGAVVNAVLR 131 Query: 129 KAAPVIR 135 Sbjct: 132 SLLRQRD 138 >UniRef50_UPI000174635C RsmB n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI000174635C Length = 414 Score = 108 bits (270), Expect = 7e-23, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 50/126 (39%), Gaps = 8/126 (6%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 +R+ A+Q L W+ S+ AD+ + A + D + L+ G N LD ++ Sbjct: 7 NSRQLALQILVEWERSEIYAADLIEKAAATHRLDHRDTALLQTLVMGTLRNIDLLDIWLE 66 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 + L +LR+ + +L ++P +NE + A + VN VL Sbjct: 67 RVCDN--QHLETSVHWLLRLGIAQLL-LLEMPAHAVVNETVNQA-----GKARGLVNAVL 118 Query: 128 DKAAPV 133 + Sbjct: 119 RRVDRE 124 >UniRef50_B8D2G0 N utilization substance protein B homolog n=1 Tax=Halothermothrix orenii H 168 RepID=NUSB_HALOH Length = 134 Score = 108 bits (270), Expect = 7e-23, Method: Composition-based stats. Identities = 47/137 (34%), Positives = 73/137 (53%), Gaps = 7/137 (5%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVK---DVDVLYFRELLAGVAT 57 MK R + R A+Q LYS +S + E K D YF +++ GV Sbjct: 1 MKI-TRHQERVWALQILYSLDISSELNIQKARKTCREFKYKKVLDKKRYYFEDIVEGVIN 59 Query: 58 NTAYLDGLMKPY-LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 + LD ++ Y + +E + +++ +LRIALYE+ S +P VAI+EA+E+AK FG Sbjct: 60 SRQDLDSIINKYAIDWDVERMACIDRNILRIALYEI--ESGLPVGVAIDEAVEIAKDFGD 117 Query: 117 EDSHKFVNGVLDKAAPV 133 +S KF+NG+L K+ Sbjct: 118 SNSPKFINGILAKSIED 134 >UniRef50_A8SZ12 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A8SZ12_9FIRM Length = 153 Score = 108 bits (270), Expect = 8e-23, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 61/149 (40%), Gaps = 15/149 (10%) Query: 4 AARRRARECAVQALYSWQLS-----QNDIADVEYQFLAEQDVKD---------VDVLYFR 49 RR R+ + +++ + + + + + + D D Y Sbjct: 1 MTRREIRDKIFKIVFTAEFNTQEEMKEQLELAFDTEMPGDEEDDPMLYASVSEKDKEYIT 60 Query: 50 ELLAGVATNTAYLDGLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAI 108 + + + + +D + L +G+ E A+LR+ +YE+ +P KVAINEA+ Sbjct: 61 DKVMDILAHKDAIDNTISEISEGWKLPRIGKEELAILRLGVYEVVYDETIPEKVAINEAV 120 Query: 109 ELAKSFGAEDSHKFVNGVLDKAAPVIRPN 137 ELAK + + KFVN +L K Sbjct: 121 ELAKKYCDVSASKFVNALLAKLVKKEESG 149 >UniRef50_UPI0000D5356A transcription termination factor (NusB) n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D5356A Length = 127 Score = 107 bits (269), Expect = 9e-23, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 14 VQALYSWQLSQNDI--ADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLS 71 +Q LY ++ ++F + K + EL+ G+A +D ++ L Sbjct: 1 MQFLYGNEIQGETEITDGKLHEFWELRLTKTFARDFAAELVKGIARELPLIDEAIEDSLE 60 Query: 72 R-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 L V++ +LR+A YE+ +P + AINEAIE+AK G+EDS F+NG+LD+ Sbjct: 61 NYSFGRLANVDRNILRLATYEILFADHIPGQAAINEAIEVAKRLGSEDSPSFINGILDRI 120 Query: 131 AP 132 Sbjct: 121 LQ 122 >UniRef50_A9FBW8 Sun protein n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FBW8_SORC5 Length = 496 Score = 107 bits (269), Expect = 9e-23, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 49/129 (37%), Gaps = 1/129 (0%) Query: 12 CAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNTAYLDGLMKPYL 70 A + L S + L + D+ EL+ GV A L+ + + Sbjct: 33 VAARVLARVWGSDAFASAALDAELRRAPALDPRDIGLATELVYGVLRAQAALEARIAEFA 92 Query: 71 SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 ++ + +A + + Y L VP A++EA++ A++ G F N VL + Sbjct: 93 AKSRWTADPLVRAHVLMGAYSLCFLDRVPSFAAVSEAVDGAQAAGGPRVGAFANAVLRRL 152 Query: 131 APVIRPNKK 139 A + + Sbjct: 153 AAAVESGGR 161 >UniRef50_C3XHP1 Predicted protein n=1 Tax=Helicobacter bilis ATCC 43879 RepID=C3XHP1_9HELI Length = 368 Score = 107 bits (269), Expect = 1e-22, Method: Composition-based stats. Identities = 42/130 (32%), Positives = 71/130 (54%), Gaps = 2/130 (1%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 A R++ARE +Q LY+ +L + + FL Q +++ + LL G+ + Sbjct: 2 ATRKQAREAIIQILYAKELGNDKAIEQAEAFLNAQKIRNKQQDFALNLLHGICNEERKIA 61 Query: 64 GLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ +L L LG +EK ++++ +YEL +++ V INEAIEL KSF +D+ + Sbjct: 62 DIINVFLKSWDLSRLGVIEKNIIKLGVYELL-QTNTQKAVIINEAIELTKSFNVQDAFRL 120 Query: 123 VNGVLDKAAP 132 VNG+LD A Sbjct: 121 VNGILDSVAK 130 >UniRef50_B0MDS2 Putative uncharacterized protein n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0MDS2_9FIRM Length = 131 Score = 107 bits (269), Expect = 1e-22, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 63/130 (48%), Gaps = 3/130 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQD--VKDVDVLYFRELLAGVATNTAY 61 R + RE + +S ++ + + + ++ + Y + + + Sbjct: 1 MTRSKLREQMFRLCFSIDFHTSEEFEAQADLYFSNNDFFRNKEKDYIKTRTLDMLSRLEE 60 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D + ++ LG+ E +LRIA+YE+ D+P KVAINEA+EL+K++ E + Sbjct: 61 IDQKINENSKGWDIKRLGKAELTILRIAVYEIMFDEDIPDKVAINEAVELSKTYCNEKAA 120 Query: 121 KFVNGVLDKA 130 F+NG+L K Sbjct: 121 SFINGILGKI 130 >UniRef50_C5C681 N utilization substance protein B homolog n=14 Tax=Actinomycetales RepID=NUSB_BEUC1 Length = 153 Score = 107 bits (269), Expect = 1e-22, Method: Composition-based stats. Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 9/128 (7%) Query: 14 VQALYSWQLS----QNDIA----DVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 + LY + + + +A + Y E++ GVA + A +D L Sbjct: 12 LDLLYEADQKAVSGGAPASGDAVALLAERIATPHGEAPMREYTVEIVEGVAAHQARIDEL 71 Query: 66 MKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 ++ Y LE + V++A+LRI ++EL DVP VA++EA+ LA +DS FVN Sbjct: 72 LETYAQGWSLERMPAVDRAILRIGVWELLFNDDVPDAVAVDEAVALAAELSTDDSPTFVN 131 Query: 125 GVLDKAAP 132 G+L + Sbjct: 132 GLLGQLLR 139 >UniRef50_A7NB00 Transcription antitermination factor n=19 Tax=Francisella RepID=A7NB00_FRATF Length = 141 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 47/141 (33%), Positives = 72/141 (51%), Gaps = 3/141 (2%) Query: 1 MKPAAR--RRARECAVQALYSWQLSQNDIADV-EYQFLAEQDVKDVDVLYFRELLAGVAT 57 MK AR AR AVQALY +++ N +++ + D D F L+ V T Sbjct: 1 MKTTARARNNARLYAVQALYQKKIADNTFSELKIQYYADNADRHYTDWDLFYRLIDAVKT 60 Query: 58 NTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 N +D +K S +E + V+ VL++A+ EL + + PY+V I E +E+ S G E Sbjct: 61 NQDTIDKYIKENSSNGVESINYVDYVVLQVAIAELIECLENPYQVIIKEYVEICYSMGTE 120 Query: 118 DSHKFVNGVLDKAAPVIRPNK 138 + +KF+N VL A IR + Sbjct: 121 EGYKFINAVLQNLAKSIRSEE 141 >UniRef50_A4E6J4 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E6J4_9ACTN Length = 466 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 3/128 (2%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR+ A+ L DV + + + D + L GVA LD L+ Sbjct: 7 ARKLALDVLMEADRRGMYARDVLSSRASAKAIDQRDSAFAARLALGVAATQGILDELLDQ 66 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 +L + +++ + LRI+ +E+ P +VA+++ +EL +S GA+ + N VL Sbjct: 67 FLDKP-KKVAPRVRMALRISAFEMLYL-HTPGRVAVSQGVELVRS-GAKSAAGLANAVLH 123 Query: 129 KAAPVIRP 136 K A + Sbjct: 124 KVADNVED 131 >UniRef50_Q2RTC4 N utilization substance protein B homolog n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=NUSB_RHORT Length = 185 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 43/157 (27%), Positives = 62/157 (39%), Gaps = 26/157 (16%) Query: 7 RRARECAVQALYSWQLSQ------------------------NDIADVEYQFLAEQDVKD 42 AR AVQALY L++ D + ++ Sbjct: 23 SAARLAAVQALYVLDLAEDARVDQVVLDFMSGSMGGMAIVEVADPEGIFDPTEEIAALEP 82 Query: 43 VDVLYFRELLAGVATNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPY 100 D F L+ G A LD ++ L + L V +AVLR +YEL +R P Sbjct: 83 PDGELFAMLVRGAHAELARLDEVIGASLSADWPWDRLEPVVRAVLRAGVYELLERQRTPP 142 Query: 101 KVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPN 137 +VAI E +++A +F + VN VLD+ A RP Sbjct: 143 RVAIKEYVDIAAAFYSGAEPGMVNAVLDRVARSARPE 179 >UniRef50_Q01T72 N utilization substance protein B homolog n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=NUSB_SOLUE Length = 146 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 4/127 (3%) Query: 14 VQALYSWQLSQNDIADVEYQFLA--EQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL- 70 +Q L+ W + + D + D K + +L+ G + A +D + + Sbjct: 12 LQILFIWDARKQPVEDAINAYYDTLYSDEKPERDPFVIDLVRGTVEHLAEVDDRITRHAE 71 Query: 71 SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 +E + V++ +LR+A+YE++ R P V I+EA+ELA+ F E+S +FVNGVLD Sbjct: 72 HWRMERMPAVDRNILRLAVYEMT-RGGTPAPVTIDEALELARKFSNEESVQFVNGVLDAV 130 Query: 131 APVIRPN 137 + Sbjct: 131 RREMPEP 137 >UniRef50_C1TMF2 Transcription antitermination factor NusB n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TMF2_9BACT Length = 143 Score = 107 bits (267), Expect = 1e-22, Method: Composition-based stats. Identities = 44/145 (30%), Positives = 72/145 (49%), Gaps = 8/145 (5%) Query: 1 MKPA----ARRRARECAVQALYSWQLSQN-DIADVEYQFLAEQDVKDVDVLYFRELLAGV 55 MK + RARE A+Q LYS +++ D F E ++ R L+ GV Sbjct: 1 MKVGRGHYKKHRAREVALQLLYSMDVTKKHDAEKALNDFSFEDEIDVETG--VRALVLGV 58 Query: 56 ATNTAYLDGLMK-PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 + +D L+ + + + V++A +R+A+YE VP VAI+EA+EL K F Sbjct: 59 MDHLGEIDNLINVNVVGWRGDRMVAVDRAAIRLAVYEGLIARVVPVPVAISEAVELVKVF 118 Query: 115 GAEDSHKFVNGVLDKAAPVIRPNKK 139 G ++S +FVNG L + + + + Sbjct: 119 GTDESGRFVNGALARIVRAMPEDDE 143 >UniRef50_A8GMD2 N utilization substance protein B homolog n=15 Tax=Rickettsia RepID=NUSB_RICAH Length = 156 Score = 107 bits (267), Expect = 2e-22, Method: Composition-based stats. Identities = 38/151 (25%), Positives = 60/151 (39%), Gaps = 15/151 (9%) Query: 2 KPAARRRARECAVQALYS-WQLSQNDIADVEYQFLAEQDVKDVD------------VLYF 48 K + AR AVQA+Y + +D+ D+ L+ + +F Sbjct: 5 KINKKSIARIAAVQAIYQNILQNNDDMDDIMQNVLSFYRNDSSITNLTGNLKISLSISHF 64 Query: 49 RELLAGVATNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINE 106 + L+ V N LD ++ +L + + + +A+LR +YEL P KV INE Sbjct: 65 KILVKSVFENINKLDEIIDNHLTNDKDPAHMPILLRALLRAGIYELLFYPTTPAKVVINE 124 Query: 107 AIELAKSFGAEDSHKFVNGVLDKAAPVIRPN 137 ++A FVN VLD A Sbjct: 125 YTDIANDMLNGYEIGFVNSVLDTIAKEKNKI 155 >UniRef50_Q0SP57 N utilization substance protein B homolog n=43 Tax=Borrelia RepID=NUSB_BORAP Length = 137 Score = 107 bits (267), Expect = 2e-22, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 73/136 (53%), Gaps = 6/136 (4%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQF-LAEQDVK---DVDVLYFRELLAGVATNTAYL 62 R A Q +YS ++Q+ + D+ F + ++ + + ++ L+ G N ++ Sbjct: 2 HEVRVLAFQKIYSIDINQSAMDDIFDIFNIEDKGLDIENESIKSFYSSLVNGTFNNLEHI 61 Query: 63 DGLMKPYL-SRLLEELGQVEKAVLRIALYELSKRS-DVPYKVAINEAIELAKSFGAEDSH 120 D L++ + L+ + +V+ A+LR+ +Y L ++ + + I++AI +AK +G+++S Sbjct: 62 DSLIRDISWNWSLDRMDKVDLAILRMGVYSLKFQNFENSKRAVIDDAILIAKKYGSKNSC 121 Query: 121 KFVNGVLDKAAPVIRP 136 KF+NG+LD + Sbjct: 122 KFINGILDALLKNMEN 137 >UniRef50_Q2SSR7 RRNA methyltransferase RsmB (Sun protein), putative n=4 Tax=Mollicutes RepID=Q2SSR7_MYCCT Length = 428 Score = 107 bits (267), Expect = 2e-22, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 58/129 (44%), Gaps = 4/129 (3%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 +R A L +++ + + ++++++ D + L+ GV +N +LD L+ Sbjct: 11 NSRSIAFDILKKVFVNKAYSNVLLNK-ISKKNLNQQDKDFVFNLVHGVISNKIHLDYLLA 69 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 + + + +L I+LY++ + +P +NE++ L K+ + F+N +L Sbjct: 70 KLIDVKKTSID--LQVILLISLYQMIYLNSIPNYAIVNESVNLIKTTS-QKQANFINAIL 126 Query: 128 DKAAPVIRP 136 +K Sbjct: 127 NKFLRFKDK 135 >UniRef50_C7LUK3 Sun protein n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LUK3_DESBD Length = 424 Score = 107 bits (267), Expect = 2e-22, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 2/118 (1%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR A+ L + D+ + L D EL G +D L+ Sbjct: 6 ARRLALDILRRTLDHKQDLQAAVDEVLNPVQ-AGPDKGLATELAYGYLRMRGRIDFLLSQ 64 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGV 126 L ++ + K +L +A+YEL S +P ++ A+ L + + K NGV Sbjct: 65 LLKNPVQT-SPIMKRILGVAMYELLFLSRIPDYATLDWAVTLVRERLDQTMGKVANGV 121 >UniRef50_A8RCQ7 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RCQ7_9FIRM Length = 415 Score = 107 bits (267), Expect = 2e-22, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 44/130 (33%), Gaps = 5/130 (3%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 AR A L + + + L V D +++ G N + + Sbjct: 2 NARAYAFALLKEICIDEGYSNLLLRNKLQ--SVDPKDKALVTQIVYGTLQNYRLVRYQWQ 59 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 Y+ + + +L +++Y+L +P I+EA+ + K VN VL Sbjct: 60 SYVKKEPC---KEVALLLDMSVYQLLYMDKMPAYAVIDEAVRITKKNIHPRFSALVNAVL 116 Query: 128 DKAAPVIRPN 137 + + Sbjct: 117 RQVERNGKRE 126 >UniRef50_A5WHT3 NusB antitermination factor n=1 Tax=Psychrobacter sp. PRwf-1 RepID=A5WHT3_PSYWF Length = 252 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 46/145 (31%), Positives = 74/145 (51%), Gaps = 13/145 (8%) Query: 7 RRARECAVQALYSWQLSQ-------------NDIADVEYQFLAEQDVKDVDVLYFRELLA 53 R+AR A+Q LY W ++ N D+ + A + V + Y+ L+ Sbjct: 38 RKARRFALQGLYEWLMTDHRFEQMGQGEWKANPPHDIAARTRATNAMHTVHLGYYHTLMR 97 Query: 54 GVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKS 113 + L+ L+ +L R ++++ VE AVL I YEL +PYKV ++EA++L Sbjct: 98 EIPEQITDLEALIAQHLDRAIDKIDMVEHAVLLIGAYELKNSLHIPYKVVLDEAMKLNTH 157 Query: 114 FGAEDSHKFVNGVLDKAAPVIRPNK 138 FGA D+HK +N V+DK A +R + Sbjct: 158 FGATDAHKLINAVMDKLAAQLRTVE 182 >UniRef50_A8TL32 NusB antitermination factor n=1 Tax=alpha proteobacterium BAL199 RepID=A8TL32_9PROT Length = 139 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 42/129 (32%), Positives = 63/129 (48%), Gaps = 10/129 (7%) Query: 20 WQLSQNDIADVEYQF--------LAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL- 70 ++S +V +F + D+ D +F L+ GVA LDG++ L Sbjct: 1 MEVSGKSGHEVVPEFVGRRFAGLIEGGDMAPADPKFFERLVLGVAGEMPTLDGMLADCLQ 60 Query: 71 -SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 LE L V +A+ R+ YEL DVP +V I+E ++L +F A VNGVLDK Sbjct: 61 PEGHLERLEVVLRAIFRLGTYELLSVDDVPVRVVISEYVDLTHAFFAGREPGLVNGVLDK 120 Query: 130 AAPVIRPNK 138 A V+R ++ Sbjct: 121 IARVVREDE 129 >UniRef50_A8I0J8 Antitermination protein n=1 Tax=Azorhizobium caulinodans ORS 571 RepID=A8I0J8_AZOC5 Length = 137 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 59/135 (43%), Gaps = 10/135 (7%) Query: 14 VQALYSWQLSQNDIADVEYQF--------LAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 +QALY ++ + ++ +F + + D FR ++ GV +D + Sbjct: 1 MQALYQMDIAGTPVNEILAEFETHWLGREVEGDVYPEADRALFRTVVEGVLAQQRTIDPM 60 Query: 66 MKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 + L+ L + V +A LR +EL + + P +V I E + +A +F + V Sbjct: 61 VDEALTAGWPLRRVELVMRATLRAGAFELIGKPETPARVVIAEYVNVAAAFFEREETGMV 120 Query: 124 NGVLDKAAPVIRPNK 138 N VLD A +R + Sbjct: 121 NAVLDSLARKLRAEE 135 >UniRef50_C8PI00 Transcription antitermination factor NusB n=1 Tax=Campylobacter gracilis RM3268 RepID=C8PI00_9PROT Length = 342 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 44/128 (34%), Positives = 67/128 (52%), Gaps = 5/128 (3%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 A R +AR A+ LYS ++ D ++L E+ +++ + LL G + N A +D Sbjct: 2 ATRHQARLAAISLLYSRDMNGGG-EDFADEYLEEKRIRNEQRNWTLALLRGASENLAAVD 60 Query: 64 GLMKPYLSR-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 L+ L L E+ +E+A+LR+ YEL +D + INEAI AK G S +F Sbjct: 61 ALIDENLKEFKLAEISALERAILRLGAYELRF-TDTDAGIVINEAINSAKELGI--SPRF 117 Query: 123 VNGVLDKA 130 +NGVLD Sbjct: 118 INGVLDAL 125 >UniRef50_Q18B61 N utilization substance protein B homolog n=6 Tax=Clostridiales RepID=NUSB_CLOD6 Length = 169 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 74/167 (44%), Gaps = 34/167 (20%) Query: 1 MKP--AARRRARECAVQALYSWQLSQNDIADVEYQF------------------------ 34 MK A + RE ++ +Y +++ D +E + Sbjct: 2 MKKDRAQKSTTREYIMKLIYQININKEDFETLEDKVDNFLKDNSEHIINRYKELALQYSK 61 Query: 35 -----LAEQDVKDV-DVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRI 87 L + +++DV D Y + + N +D L+ + ++ + +V+ ++LR+ Sbjct: 62 NTNLKLEDTEIEDVIDKKYINTVCKALKENHDKIDELINKHAKNWTVDRMPKVDVSILRL 121 Query: 88 ALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVI 134 ++ E+ D P KV+INEA+ELAK + + S KF+NG+L I Sbjct: 122 SVCEILYL-DTPNKVSINEAVELAKIYCDDKSPKFINGILGSVVDEI 167 >UniRef50_Q1MPZ7 TRNA and rRNA cytosine-C5-methylases n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MPZ7_LAWIP Length = 447 Score = 106 bits (265), Expect = 3e-22, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 50/139 (35%), Gaps = 5/139 (3%) Query: 2 KPAARRR---ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATN 58 K R++ ARE A AL I + L + D+ EL+ G Sbjct: 8 KYTNRKKTKTAREIATIAL-QKIKEGQPIQVLLNNILLTYPLSKQDIALVTELVYGYLRL 66 Query: 59 TAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 + +++ +L + E L K ++ +A YEL +P I+ A+ KS + Sbjct: 67 EIRIVWILEQFLKKS-EHLPYEVKLIIGLATYELLFLDKIPPYATIHTAVSTIKSKFGKI 125 Query: 119 SHKFVNGVLDKAAPVIRPN 137 N L + N Sbjct: 126 LAGVANASLQTIFRKSKHN 144 >UniRef50_C0W1L8 Putative uncharacterized protein n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0W1L8_9ACTO Length = 180 Score = 105 bits (264), Expect = 4e-22, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 61/139 (43%), Gaps = 6/139 (4%) Query: 4 AARRRARECAVQALYSWQLSQ-----NDIADVEYQFLAEQDVKDVDVLYFRELLAGVATN 58 ++R RAR+ A+ ++ I + + + Y E++ GV + Sbjct: 7 SSRTRARKRAIDTIFEADQRGRAESAAGINLMLEERKEITAAQTPLPEYSIEIIEGVRDH 66 Query: 59 TAYLDGLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 +D L+ + + R L V++A+LR+A +E+ VP AI+EA+ + + + Sbjct: 67 LIEIDDLLDTHTTGRTFSRLPAVDRAILRVATWEIIWNETVPDITAIDEAVRITRKISTD 126 Query: 118 DSHKFVNGVLDKAAPVIRP 136 DS VN +LD + Sbjct: 127 DSPALVNAILDAVRRDSKN 145 >UniRef50_UPI0000E0DBE4 Putative Sun protein n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E0DBE4 Length = 442 Score = 105 bits (264), Expect = 4e-22, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 45/127 (35%), Gaps = 3/127 (2%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLM 66 ++ R A L+ Q L D + +E++ G L + Sbjct: 7 QQLRADAAWVLFQILEKGVSSKQALAQRLEHYQ--GRDRAWLQEMVFGCLRTLPTLQFWL 64 Query: 67 KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGV 126 + L + L+ ++ + ++ I LY+++ S V A++E + A +N + Sbjct: 65 RGLLDKPLKGRKKILEHLILIGLYQIAY-SRVSEHAAVSETVGAADLLKGTTLKALINAI 123 Query: 127 LDKAAPV 133 L Sbjct: 124 LRTFIRE 130 >UniRef50_C0QI57 RsmB n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QI57_DESAH Length = 455 Score = 105 bits (263), Expect = 4e-22, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 1/121 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNTAYLDGLMKP 68 R A+ L + S+ + + ++ A+ + + D ++ G +LD L+ P Sbjct: 17 RFLALTILIENESSKFTLDKILERYSAQLESLAHRDRALANAIIYGTLRWKEHLDWLITP 76 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 + R L+++ LR ALY+ +P A+N A+ AK + FVN VL Sbjct: 77 FSKRPLDQIEPAICYTLRTALYQTVFMDKIPVSAAVNTAVNAAKKLSNTGAAGFVNAVLR 136 Query: 129 K 129 K Sbjct: 137 K 137 >UniRef50_D1BMJ1 NusB antitermination factor n=3 Tax=Veillonella RepID=D1BMJ1_VEIPT Length = 134 Score = 105 bits (263), Expect = 5e-22, Method: Composition-based stats. Identities = 45/132 (34%), Positives = 76/132 (57%), Gaps = 5/132 (3%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 RR AR+ A Q LY+ + D DV QF K +D Y ++ GV +N +D Sbjct: 6 NRREARQYAFQMLYANEF-HTDQNDV--QFPEGNIHKAMDKAYANSIIEGVLSNAEAIDA 62 Query: 65 LMKPYLS-RLLEELGQVEKAVLRIALYELSKRSD-VPYKVAINEAIELAKSFGAEDSHKF 122 ++P+ R + L +V++++LRIA++E++ + + + +AINEAI+LAK FG++ S+K Sbjct: 63 TLQPFCKSRKVANLDKVDRSILRIAVWEMNNKVEPLEPSIAINEAIQLAKEFGSDASYKL 122 Query: 123 VNGVLDKAAPVI 134 +N +LD Sbjct: 123 INAILDAYNKSK 134 >UniRef50_B1N082 Transcription termination factor n=3 Tax=Leuconostoc RepID=B1N082_LEUCK Length = 140 Score = 105 bits (263), Expect = 5e-22, Method: Composition-based stats. Identities = 49/140 (35%), Positives = 75/140 (53%), Gaps = 9/140 (6%) Query: 1 MKPAARRRARECAVQALYSWQL--SQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATN 58 M R +R+ A Q L++ + N+I + L +D D Y L+ G+ N Sbjct: 1 MANLTRHESRQAAFQILFALEKDPQNNNIDRLYDIVLEGKDFDD----YLPRLVNGILGN 56 Query: 59 TAYLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 LD + +L+ + + + + +LR+A+YELS++ VPYKVAI+EA+ LAK+F Sbjct: 57 KIDLDAQISEHLAAGWAIARINKADLVILRLAIYELSQQL-VPYKVAIDEALILAKTFAD 115 Query: 117 EDSHKFVNGVLDKAAPVIRP 136 ED KFVNGVL AP + Sbjct: 116 EDDRKFVNGVLKNFAPKVEA 135 >UniRef50_D0LCQ6 Transcription antitermination factor NusB n=3 Tax=Actinomycetales RepID=D0LCQ6_GORB4 Length = 163 Score = 105 bits (263), Expect = 5e-22, Method: Composition-based stats. Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 5/136 (3%) Query: 1 MK-PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKD---VDVLYFRELLAGVA 56 MK P R +AR AV L+ + Q A + + + Y ++ G+A Sbjct: 1 MKQPGTRHKARRRAVDILFEAEAKQVSPAQLVAERRELVRSDESVGAIHDYTARVIEGLA 60 Query: 57 TNTAYLDGLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG 115 + +D ++ +L L L V++A+LR+A +EL DV V ++EA+ELAK Sbjct: 61 DDQEQIDSVISSHLREWTLPRLPAVDRAILRLATWELFNSVDVDTVVIVDEAVELAKELS 120 Query: 116 AEDSHKFVNGVLDKAA 131 +DS FVNGVL K A Sbjct: 121 TDDSPAFVNGVLAKIA 136 >UniRef50_C2BWJ7 Possible transcription antitermination protein NusB n=1 Tax=Mobiluncus curtisii ATCC 43063 RepID=C2BWJ7_9ACTO Length = 191 Score = 105 bits (262), Expect = 6e-22, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 5/134 (3%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIAD---VEYQFLAEQDVKD-VDVLYFRELLAGVAT 57 K R R R AV LY + D + Q ++ Y E+L GVA Sbjct: 4 KLPRRTRERVRAVDVLYEAHVRGWDTPEGIFSLSQLRQDETTAQTPLPAYAVEILEGVAE 63 Query: 58 NTAYLDGLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 + +D + Y L + +V+ A++R+A +E+ DV VAI A+++A+ Sbjct: 64 HLERIDAALATYSKAWPLHRMPEVDLAIMRVAAWEILFNPDVTGPVAITAAMQIAEERST 123 Query: 117 EDSHKFVNGVLDKA 130 ++S KF+NG+L Sbjct: 124 DESPKFINGLLGAI 137 >UniRef50_Q0BWV2 Putative ribosomal RNA small subunit methyltransferase B n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0BWV2_HYPNA Length = 423 Score = 105 bits (262), Expect = 6e-22, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 53/123 (43%), Gaps = 2/123 (1%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 R A + L + + D A ++ D + R + + + ++D + P Sbjct: 6 IRLAAGRLLNLVLDKKRTLDDALATDDAYNNLDGSDRAFARAIASSALRHLGWIDRGVSP 65 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS-HKFVNGVL 127 +LSR L G +A++R ++ DVP+ A++E +E A+ + S F+N L Sbjct: 66 FLSRPLSATGAEIRALIRAGAAQIWFM-DVPHHAAVSETVEAARLWSPARSGGGFLNAAL 124 Query: 128 DKA 130 + Sbjct: 125 RRV 127 >UniRef50_C7H6X0 Transcription antitermination factor NusB n=3 Tax=Ruminococcaceae RepID=C7H6X0_9FIRM Length = 147 Score = 105 bits (262), Expect = 7e-22, Method: Composition-based stats. Identities = 41/130 (31%), Positives = 68/130 (52%), Gaps = 2/130 (1%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 RR ARE A +S + + + + VDV + + LL+ +++A +D Sbjct: 6 PRREARENAFLLAFSQTFGDVPLQEALDTNNECGEERPVDV-FGQRLLSAYYSHSAEVDD 64 Query: 65 LMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 L++ +L +E L +V VLR+AL E+ + V INEA+EL K +GA++ ++FV Sbjct: 65 LIRDHLRNWTMERLPRVSLTVLRLALAEMLYGDERKPGVVINEAVELTKKYGADEDYQFV 124 Query: 124 NGVLDKAAPV 133 NG+L A Sbjct: 125 NGLLGAVARE 134 >UniRef50_C8WHT5 NusB/RsmB/TIM44 n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WHT5_EGGLE Length = 473 Score = 104 bits (261), Expect = 8e-22, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 6/132 (4%) Query: 3 PAARRRA---RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNT 59 R +A R A+ + + + DV + D+ D + +L GV + T Sbjct: 21 KKPRSKASPARLAALDVVRAVRERDAFAQDVIGTRIDRSDLSSEDRAFATKLALGVVSAT 80 Query: 60 AYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 LD ++ L ++ + LR++ YE+ P A+++ +EL +SF A + Sbjct: 81 GTLDEIIDRAL-NAPSDVKPDVRDALRVSTYEIIFLGKTP-HAAVDQGVELVRSF-AMSA 137 Query: 120 HKFVNGVLDKAA 131 N VL K Sbjct: 138 SGLANAVLRKIV 149 >UniRef50_A7BC97 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BC97_9ACTO Length = 320 Score = 104 bits (261), Expect = 8e-22, Method: Composition-based stats. Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 7/142 (4%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIA-DVEYQFLAEQDVKDVDV----LYFRELLAGVA 56 + +R +AR+ A ++ +V L E+ V Y +++AGVA Sbjct: 6 RFTSRTKARKRAADVVFEADQRGMGRDPEVLRDLLRERRVITAAQTPLPEYSIQIIAGVA 65 Query: 57 TNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELS-KRSDVPYKVAINEAIELAKSF 114 + +D L++ + L+ + V+ AV+R+A++E+ DV VAI+EAI + +S Sbjct: 66 DSLRRIDDLIEAHARVPGLDRVAAVDLAVMRVAVWEMLANSDDVSPIVAIDEAISIVRSI 125 Query: 115 GAEDSHKFVNGVLDKAAPVIRP 136 + S +FVN VLD I Sbjct: 126 STDASPRFVNAVLDAIRKDIAS 147 >UniRef50_Q4FPZ1 N utilization substance protein B homolog n=19 Tax=Moraxellaceae RepID=NUSB_PSYA2 Length = 375 Score = 104 bits (261), Expect = 9e-22, Method: Composition-based stats. Identities = 46/145 (31%), Positives = 74/145 (51%), Gaps = 13/145 (8%) Query: 7 RRARECAVQALYSWQLSQN-------------DIADVEYQFLAEQDVKDVDVLYFRELLA 53 R+AR A+Q LY W ++ D+ + A + V + Y+ E++ Sbjct: 52 RKARRFAMQGLYEWLVTDRRFDIDGKLGWKANAPHDIAARTRATNAMHTVHIGYYHEMMR 111 Query: 54 GVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKS 113 + L+ L+ L R + +L VE A+L I YEL R ++PYKV ++EA++L Sbjct: 112 DIPEQIDALNTLITQQLDREINKLDTVEHAILLIGAYELQNRLEIPYKVVLDEAMKLNNH 171 Query: 114 FGAEDSHKFVNGVLDKAAPVIRPNK 138 FGA D+HK +N VLD+ A +R + Sbjct: 172 FGATDAHKLINAVLDRMAVELRAPE 196 >UniRef50_Q2RN41 tRNA and rRNA cytosine-C5-methylase n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RN41_RHORT Length = 438 Score = 104 bits (260), Expect = 9e-22, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 3/118 (2%) Query: 14 VQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL 73 + L + + DV ++ D + R L A L+ ++K +L R Sbjct: 13 LDLLSAVLDHGRPLDDVFDAATR--KLEPRDRAFARLLAATTLRRMGRLEKVIKTFLDRP 70 Query: 74 LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAA 131 L K +LR+ ++ D P A+ ++++A+ +N VL K A Sbjct: 71 LPRRAVGAKHILRLGAAQMLFL-DTPPHAAVATSVDVARVRRLAPYAGLINAVLRKVA 127 >UniRef50_C5R7W5 Transcription antitermination protein NusB n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5R7W5_WEIPA Length = 139 Score = 104 bits (260), Expect = 1e-21, Method: Composition-based stats. Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 7/135 (5%) Query: 1 MKPAARRRARECAVQALYSWQLSQ-NDIADVEYQFLAEQDV---KDVDVLYFRELLAGVA 56 M R + R+ A Q+L+ L+ D+ Q L +D ++ GV Sbjct: 1 MTELNRHQIRQAAFQSLFGLALNPTADVDTTITQVLVGDPEIAWEDEIPADLTSVVLGVV 60 Query: 57 TNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 LD ++ +L L+ L + ++R+ALYE +DVP K+A+NEA++LA F Sbjct: 61 AKQDELDLMITDHLSSDWTLDRLNTTDLVLMRLALYEAKF-TDVPAKIAVNEALQLAHDF 119 Query: 115 GAEDSHKFVNGVLDK 129 + S KF+NG+L+K Sbjct: 120 TDDKSRKFINGILNK 134 >UniRef50_Q8NQ33 N utilization substance protein B homolog n=5 Tax=Corynebacterium RepID=NUSB_CORGL Length = 227 Score = 103 bits (258), Expect = 2e-21, Method: Composition-based stats. Identities = 35/144 (24%), Positives = 64/144 (44%), Gaps = 6/144 (4%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQ----FLAEQDVKDVDVLYFRELLAGVAT 57 + +R +AR AV L+ + D + + Y ++ GVA Sbjct: 10 RHGSRYKARMRAVDILFEAESRDVDPVAIIDDRHKLARDTNPIVAPVAEYTETIINGVAV 69 Query: 58 NTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG 115 LD + ++ + L L V++A+LR+A +E+ +DVP AI EA+E+A + Sbjct: 70 ELDTLDVFLAEHIAETWTLGRLPSVDRAILRVASWEMIYNADVPVTTAIVEAVEIASEYS 129 Query: 116 AEDSHKFVNGVLDKAAPVIRPNKK 139 + S ++N LD A + ++ Sbjct: 130 GDKSSAYINATLDAMASKVETLRE 153 >UniRef50_C6XIX5 NusB antitermination factor n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XIX5_HIRBI Length = 163 Score = 103 bits (258), Expect = 2e-21, Method: Composition-based stats. Identities = 35/145 (24%), Positives = 68/145 (46%), Gaps = 10/145 (6%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAE--------QDVKDVDVLYFRELLA 53 + +R AR AVQALY + + V + + + ++ D FR + Sbjct: 16 RKLSRSGARLAAVQALYQIEQTGRAGRAVIEDYCEDGIGLDDEGRPIEAADPEIFRNTVE 75 Query: 54 GVATNTAYLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELA 111 GV + ++ + L+ +E L +A+LR +YEL KR D+P ++ ++E + +A Sbjct: 76 GVIESLDDINLAIVKRLADGWKIERLDATSRAILRAGVYELMKRDDLPAQIILDEYVSIA 135 Query: 112 KSFGAEDSHKFVNGVLDKAAPVIRP 136 +F + +F+N +L+ +R Sbjct: 136 HAFFDDAEPRFINALLENVREDVRD 160 >UniRef50_B6BUY9 Transcription antitermination factor NusB n=1 Tax=beta proteobacterium KB13 RepID=B6BUY9_9PROT Length = 127 Score = 103 bits (258), Expect = 2e-21, Method: Composition-based stats. Identities = 42/125 (33%), Positives = 73/125 (58%) Query: 14 VQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL 73 ++++Y ++ D D++ L + D D ++ L+ G+ N + + ++ + Sbjct: 1 MKSIYRGIMNTFDYTDIKKDILEDPDYCRCDEEFYNSLIDGIKENYQEILEDLDNFMDKK 60 Query: 74 LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPV 133 EEL +E ++L +A YEL R D+P+KV+INEA+E+ KSFG ++S KFVNG LD+ A Sbjct: 61 KEELNPIELSILVVAYYELKTRVDIPFKVSINEALEITKSFGGQESFKFVNGSLDRVAKK 120 Query: 134 IRPNK 138 R + Sbjct: 121 YRALE 125 >UniRef50_A1TWM9 Sun protein n=3 Tax=Marinobacter RepID=A1TWM9_MARAV Length = 433 Score = 103 bits (258), Expect = 2e-21, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 45/130 (34%), Gaps = 4/130 (3%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R A L + + ++ L + + + G L+G + Sbjct: 9 RAIAANVLLAVEQ-GQSLSQCLPPAL--NQLPPEQRPQLQAICYGTCRWFHRLEGELNQR 65 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 L + L + ++ ++ +AL++L +NE +E ++ VNGVL Sbjct: 66 LKKPLRKPDRIIHHLMLVALFQLRYSEQ-ATYAVLNETVEACRALDKPHLTGLVNGVLRA 124 Query: 130 AAPVIRPNKK 139 A P K Sbjct: 125 AEREGAPEPK 134 >UniRef50_Q21DD2 Fmu (Sun) n=13 Tax=Rhizobiales RepID=Q21DD2_RHOPB Length = 450 Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 46/132 (34%), Gaps = 5/132 (3%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDV---KDVDVLYFRELLAGVATNTAYLDGL 65 AR A L + D A + D D R L+A + L + Sbjct: 17 ARRIAADILDGVLHKHRTLDDQLEGAAAHPGLKTLSDRDRALMRRLVATILRRLGTLGHV 76 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAK-SFGAEDSHKFVN 124 + L R L ++ L I ++ +VP A++ ++ L + A VN Sbjct: 77 LSRMLDRGLPTDAPRAQSALLIGAAQILWM-EVPDHAAVDLSVRLVQSDRRAAKYAGLVN 135 Query: 125 GVLDKAAPVIRP 136 VL + A +P Sbjct: 136 AVLRRCAREGQP 147 >UniRef50_UPI00016C434C transcription antitermination protein NusB n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C434C Length = 139 Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 44/130 (33%), Positives = 65/130 (50%), Gaps = 4/130 (3%) Query: 13 AVQALYSWQLSQND-IADVEYQFLAEQDVKDVDVL-YFRELLAGVATNTAYLDGLMKPYL 70 +Q L+ W + QF ++ + D ++ Y L GVA +D +K Sbjct: 2 VLQLLFQWDQNPTKVPRKAIQQFARDRLLGDAEMSTYALSLYDGVAGRKDAIDEALKSAA 61 Query: 71 SRL-LEELGQVEKAVLRIALYELSKRS-DVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 + L + V++ VLR+ +EL + P +V INEAIELAK FG+EDS FVNGVLD Sbjct: 62 TNWRLTRMTPVDRNVLRLGAFELLFDAAPQPLEVVINEAIELAKRFGSEDSPAFVNGVLD 121 Query: 129 KAAPVIRPNK 138 + + K Sbjct: 122 RVGKMRDERK 131 >UniRef50_A0Z2Z6 Sun protein n=2 Tax=unclassified Gammaproteobacteria (miscellaneous) RepID=A0Z2Z6_9GAMM Length = 438 Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 42/116 (36%), Gaps = 3/116 (2%) Query: 23 SQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEK 82 + + + L + + +EL+ G L+G+ L + Sbjct: 20 NGESLVRALPKGLE--PLSLENRPLVQELVYGTLREWPRLEGIALQLLRKPPRAKDADVL 77 Query: 83 AVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 ++ +++LS +VP A+ E +E AKS G + +NG L + Sbjct: 78 CLILTGIHQLSGL-NVPSHAAVGETVEAAKSLGKSWAAGLINGCLRNYQRQKGALE 132 >UniRef50_C4G0T0 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G0T0_ABIDE Length = 138 Score = 102 bits (256), Expect = 3e-21, Method: Composition-based stats. Identities = 35/137 (25%), Positives = 66/137 (48%), Gaps = 1/137 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 RR RE + ++ + +++ A+ D + + + A +D Sbjct: 1 MTRREFREHTAKLIFIFDFYPEAEWKEQFESYADYSEIKEDREGLWQRVMALEEKKAEVD 60 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 L+ + + L + + +LR+A+YE+ S++P KV++NEA+ELAK +G ++S F Sbjct: 61 SLIDGASKKWRISRLSKTDLMLLRVAVYEIKFDSEIPDKVSVNEAVELAKIYGGDESPAF 120 Query: 123 VNGVLDKAAPVIRPNKK 139 VNGVL K ++ Sbjct: 121 VNGVLAKFMSGEEAKEE 137 >UniRef50_A7IBA4 Sun protein n=6 Tax=Rhizobiales RepID=A7IBA4_XANP2 Length = 471 Score = 102 bits (256), Expect = 3e-21, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 43/129 (33%), Gaps = 5/129 (3%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR AV L + D A+ + D +LA L L+ Sbjct: 47 ARILAVDGLEQVLRHGAALEDALD---ADVALDPRDRALAYRILATSLRRIGTLRALIAK 103 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKS-FGAEDSHKFVNGVL 127 + R L + ++VL ++ DVP A+ +++A++ VN VL Sbjct: 104 LMERGLPKSAPRLESVLLAGATQILFM-DVPNHAAVGLCVDVARADRNTAGFAGLVNAVL 162 Query: 128 DKAAPVIRP 136 + Sbjct: 163 RRLTREADA 171 >UniRef50_A8PKU4 Ribosomal RNA small subunit methyltransferase B n=1 Tax=Rickettsiella grylli RepID=A8PKU4_9COXI Length = 442 Score = 102 bits (255), Expect = 4e-21, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 47/128 (36%), Gaps = 2/128 (1%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLM 66 R A + + + + + + + + D + +EL GV L L Sbjct: 2 SNTRRIAAHIISRFLKKKIALNTILFAEVP-SGIDVRDRAFIQELCYGVIRWYFPLKKLS 60 Query: 67 KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGV 126 L + L Q A++ + LY+L+ ++ A+ E ++ AK + +NGV Sbjct: 61 SFLLKKSLNRSDQDIYALVLVGLYQLNYL-NISPHAAVYETVQAAKELRKRWAAPLINGV 119 Query: 127 LDKAAPVI 134 L Sbjct: 120 LRSFQRQK 127 >UniRef50_B7S425 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7S425_PHATR Length = 413 Score = 102 bits (255), Expect = 4e-21, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 49/136 (36%), Gaps = 8/136 (5%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLM 66 R AR A +AL + S D + D + R L+ +D ++ Sbjct: 75 RNARFLAARALITKTGSAAFAVDRLESNKHYSTLSTRDRSFARLLVTTTERRLGQIDEVL 134 Query: 67 KPY---LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELA----KSFGAEDS 119 + + Q +A LRI +L VP A+ E +EL K+ E Sbjct: 135 RQCQKETKSRPNRVDQFVQAALRIGATQLLFL-KVPEHAAVKETVELLRHDPKTTVPESR 193 Query: 120 HKFVNGVLDKAAPVIR 135 KFVN VL + + Sbjct: 194 IKFVNAVLRRISREGD 209 >UniRef50_C6JJK8 N utilization substance protein B n=2 Tax=Fusobacterium RepID=C6JJK8_FUSVA Length = 132 Score = 102 bits (254), Expect = 5e-21, Method: Composition-based stats. Identities = 39/131 (29%), Positives = 79/131 (60%), Gaps = 4/131 (3%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDV--KDVDVLYFRELLAGVATNTAY 61 +RR ARE + ++ ++ + + D+ +L +++ + ++ + ++ + G+A N Sbjct: 1 MSRRLAREELFKLVFEGEIKEENTKDILESYLNREEILQNENEIAFIKKYMNGIAENNDK 60 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 + +++ ++ E +G VEKA+L+I++YE+ D PY++ INEA+ELAK +G E + Sbjct: 61 ILKVIEEKITGWSFERIGNVEKALLKISVYEIL-CEDTPYEIVINEAVELAKIYGDEKTS 119 Query: 121 KFVNGVLDKAA 131 +F+NGVL K Sbjct: 120 EFLNGVLAKIV 130 >UniRef50_C2BPE4 Transcription antitermination protein NusB n=2 Tax=Corynebacterium RepID=C2BPE4_9CORY Length = 221 Score = 102 bits (254), Expect = 5e-21, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 54/129 (41%), Gaps = 6/129 (4%) Query: 15 QALYSWQLSQNDIADVEYQFLAEQDVK----DVDVLYFRELLAGVATNTAYLDGLMKPYL 70 LY + D + +A Y + ++ GVA +D + +L Sbjct: 27 DILYEAENRDVDPVAIVEDRIALAREDRNAVAPVAEYTQVIVKGVAEELDAIDDTISRFL 86 Query: 71 --SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 L + V++A+LR++++EL D+P A+ E +E+A + + + +++ VLD Sbjct: 87 AEDWELHRIPAVDRAILRLSVWELLFNPDIPTATAVVEGVEIASQYSNDQAAPYIHAVLD 146 Query: 129 KAAPVIRPN 137 A Sbjct: 147 DVAQSRSAE 155 >UniRef50_D0BJY7 Transcription antitermination factor NusB n=2 Tax=Granulicatella RepID=D0BJY7_9LACT Length = 154 Score = 102 bits (254), Expect = 5e-21, Method: Composition-based stats. Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 19/149 (12%) Query: 3 PAARRRARECAVQALYSWQLSQNDIA-----DVEYQFLAEQDVKDV------------DV 45 P RR R A+QALY + ++ EQ + ++ Sbjct: 5 PLKRRALRIIAIQALYQMDICKDLSEFDAVRLALDVLHDEQSFDEEVYSNEALLDEFPEI 64 Query: 46 LYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSK-RSDVPYKVA 103 Y +L+ GV +D L+ +L L + +++ ++R+A+ E+ +VP VA Sbjct: 65 HYSLDLIQGVQNQLEEIDALISSHLKGWELNRIVRLDLMIMRVAVCEMRSPELEVPQTVA 124 Query: 104 INEAIELAKSFGAEDSHKFVNGVLDKAAP 132 +NEAIE+AK + E S KF+NGVL Sbjct: 125 LNEAIEIAKLYSDEKSAKFINGVLSNFVE 153 >UniRef50_D1B5H9 NusB antitermination factor n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B5H9_THEAS Length = 148 Score = 101 bits (253), Expect = 6e-21, Method: Composition-based stats. Identities = 46/136 (33%), Positives = 69/136 (50%), Gaps = 3/136 (2%) Query: 3 PAARRRARECAVQALYSWQLSQN-DIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 P RRRARE A+Q Y + Q I +V L + Y L +G+ Sbjct: 6 PKKRRRARELALQLGYLMDMRQELGINEVLGS-LPLDEEDPEVRDYAVALTSGLYRERQR 64 Query: 62 LDGLM-KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 L+G++ + + E + V++ +R+A+ E VP+ VAI+EA+ELAK FG EDS Sbjct: 65 LEGILRERLVGWRPERMVAVDRVAIRLAILEGYLERLVPFPVAISEAVELAKLFGTEDSG 124 Query: 121 KFVNGVLDKAAPVIRP 136 +FVNGVL + + Sbjct: 125 RFVNGVLGRIFKDLED 140 >UniRef50_C4GAK6 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GAK6_9FIRM Length = 152 Score = 101 bits (253), Expect = 6e-21, Method: Composition-based stats. Identities = 41/150 (27%), Positives = 67/150 (44%), Gaps = 21/150 (14%) Query: 2 KPAARRRARECAVQALYSWQLSQND-IADVEYQFLAEQDV-------KDVDVLYFREL-- 51 K RR+ RE A + L+ D + D + + ++ D L Sbjct: 4 KTMIRRQIRETAFRILFVLNFCPADQMQDQLNLYFTDHTELEIDDLTEEEDQKAVIRLDQ 63 Query: 52 ---------LAGVATNTAYLDGLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYK 101 G A + +D +++ L L +V+ +LR+A+YE+ ++P Sbjct: 64 ASWPEITAKCLGAAGHLPEIDRIIEESSEGWKLSRLTKVDLTLLRLAVYEMKF-ENLPSG 122 Query: 102 VAINEAIELAKSFGAEDSHKFVNGVLDKAA 131 +AINEA+ELAK +G + S FVNGVL K + Sbjct: 123 IAINEAVELAKRYGTDKSPAFVNGVLAKIS 152 >UniRef50_B6JAF7 SUN protein n=6 Tax=Alphaproteobacteria RepID=B6JAF7_OLICO Length = 446 Score = 101 bits (253), Expect = 7e-21, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 48/130 (36%), Gaps = 5/130 (3%) Query: 9 ARECAVQALYSWQLSQNDIADVEY---QFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 AR A + + + D Q A + + D D R L+A V L L Sbjct: 17 ARRIAADIIDGVLHKRRTLDDQLEGAAQHPALKSLSDRDRALMRRLVATVLRRRGTLAYL 76 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKS-FGAEDSHKFVN 124 + L R + ++ L I ++ DVP A++ ++ L ++ A VN Sbjct: 77 LSRLLDRGVPSDAPRAQSALMIGAAQILWM-DVPDHAAVDLSVRLVQADRRAAKYAGLVN 135 Query: 125 GVLDKAAPVI 134 VL + A Sbjct: 136 AVLRRCAREG 145 >UniRef50_D1KD39 Ribosomal RNA small subunit methyltransferase B n=1 Tax=uncultured SUP05 cluster bacterium RepID=D1KD39_9GAMM Length = 423 Score = 101 bits (253), Expect = 7e-21, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 47/136 (34%), Gaps = 9/136 (6%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 M+ + R A+ A+ S L + ++ D D + L+ G Sbjct: 1 MQNTNKSNTRAVALDAICSVVLDKRSLSSFV--------YPDQDDALAKSLVFGTIRFYH 52 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 L+ ++ L+ LE+ ++ + Y++ S V +I E ++ + Sbjct: 53 QLNDIVTDLLNHSLEKEDLDIHCLMLLGAYQILY-SKVAIHASIFETVDTLNFLDKTWAK 111 Query: 121 KFVNGVLDKAAPVIRP 136 VN +L + Sbjct: 112 GLVNAILRQIDRDKDS 127 >UniRef50_A3MAA2 16S rRNA m5C967 SAM-dependent methyltransferase n=18 Tax=Acinetobacter RepID=A3MAA2_ACIBT Length = 434 Score = 101 bits (253), Expect = 7e-21, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 53/136 (38%), Gaps = 6/136 (4%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 ++R R VQ L Q +A + L V + D F EL+ G L Sbjct: 8 SSRFNLRAQVVQTLLKVQQ-GQSLASILNTQL--NQVAERDRALFHELVLGTLRQWFALK 64 Query: 64 GLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 + P LS+ L + + L + LY++ + + AI+E ++ K G V Sbjct: 65 SISLPLLSKPLNN--ETVETCLYVGLYQVL-CTRIAAHAAISETVDATKQLGFPALSGIV 121 Query: 124 NGVLDKAAPVIRPNKK 139 N +L +A ++ Sbjct: 122 NAILRRATRETEDFEQ 137 >UniRef50_UPI0001BC6038 transcription antitermination protein NusB n=3 Tax=Fusobacterium RepID=UPI0001BC6038 Length = 138 Score = 101 bits (252), Expect = 8e-21, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 70/139 (50%), Gaps = 5/139 (3%) Query: 1 MK-PAARRRARECAVQALYSWQLSQNDIADVEYQ--FLAEQDVKDVDVLYFRELLAGVAT 57 M+ RR ARE + ++ ++ N + E + +V L+ G+A Sbjct: 1 MREKMTRREAREELFKWIFQTEIQGNSMEKAFEYSSLREEIEKDEVTKLFLERYRKGLAE 60 Query: 58 NTAYLDGLM-KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 + ++ + +G VEK++L++A+YE+ D+P ++ +NEA+E+AK +G Sbjct: 61 HREEIETKIQAAMTDWDFSRIGYVEKSLLKLAVYEM-YFEDLPVEIIVNEAVEIAKIYGD 119 Query: 117 EDSHKFVNGVLDKAAPVIR 135 +H+F+NGVL K + + Sbjct: 120 VKTHEFINGVLAKVIKMKQ 138 >UniRef50_C0QT45 N utilization substance protein B homolog n=2 Tax=Aquificales RepID=NUSB_PERMH Length = 142 Score = 101 bits (252), Expect = 8e-21, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 63/135 (46%), Gaps = 4/135 (2%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAE--QDVKDVDVLYFRELLAGVATNTAYLD 63 R++ARE + LY++ + D+ ++ + + + V Y +L G+ + +D Sbjct: 5 RKKAREIVFRTLYTYDIKGGDLFEIMEDHIKDIRGKLSKKTVDYIYSILKGIDEHLPEID 64 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF-GAEDSHK 121 +++ L LE LG E+A+LR+ +YEL + ++L K + D+ K Sbjct: 65 DILRENLKNWRLERLGYPERALLRLGVYELLFSDIEDKGRVFMDILDLTKCYIDNPDTVK 124 Query: 122 FVNGVLDKAAPVIRP 136 F+NGVL + Sbjct: 125 FINGVLSTVYKNRQK 139 >UniRef50_UPI0001BC2C20 NusB antitermination factor n=1 Tax=Brevibacterium linens BL2 RepID=UPI0001BC2C20 Length = 121 Score = 101 bits (252), Expect = 9e-21, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 1/112 (0%) Query: 21 QLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQ 79 + Q + + + D Y E++ G+ ++ +D ++ Y LE + Sbjct: 3 EAGQRRLDTEQIVTMRSNDPDYPMKAYAVEIVEGITSHREEIDEIIATYAEGWTLERMPA 62 Query: 80 VEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAA 131 V+ A+L+I +E+ +VP K AI+EA+ LA+ F +DS F++G+L + Sbjct: 63 VDLALLQIGTWEIIFNDEVPDKAAIDEAVSLARQFSTDDSPGFISGLLSRVL 114 >UniRef50_Q044I1 Transcription termination factor n=18 Tax=Lactobacillus RepID=Q044I1_LACGA Length = 133 Score = 100 bits (251), Expect = 1e-20, Method: Composition-based stats. Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 4/133 (3%) Query: 4 AARRRARECAVQALYSWQLSQ-NDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 + R A+QA+Y + +V + L ++K Y E++ GV N L Sbjct: 1 MTQHEMRRIAMQAIYLANQGNLTNAEEVCQKALKALELKSF-PDYSTEIVNGVLANKKAL 59 Query: 63 DGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 D + YL L + +++ A+L +ALYE+ + A+NEA+ L F +++S Sbjct: 60 DEQLSKYLKKGWRLNRINEIDLAILEVALYEMQNSKVIEPVAALNEALNLCDEFSSKESK 119 Query: 121 KFVNGVLDKAAPV 133 KFVNG+L Sbjct: 120 KFVNGLLANFIKK 132 >UniRef50_A1AVP0 Sun protein n=1 Tax=Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica) RepID=A1AVP0_RUTMC Length = 421 Score = 100 bits (250), Expect = 1e-20, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 48/126 (38%), Gaps = 8/126 (6%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R A++A+YS +++ ++ KD D + L+ G L+ ++ Sbjct: 7 RFIALEAIYSVIINKKSLSAF-------NYPKDNDTPLIKSLVFGTIRFYHQLNDIVSKR 59 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 L ++ ++ + Y+L S + +I E + + + + VN +L K Sbjct: 60 LKHSFKKEDLDVHCLMLLGAYQLLY-SKIAIHASIFETVNVVNALNKPWAKALVNAILRK 118 Query: 130 AAPVIR 135 + Sbjct: 119 IDRDKK 124 >UniRef50_C1SH03 Transcription antitermination factor NusB n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SH03_9BACT Length = 147 Score = 100 bits (250), Expect = 2e-20, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 67/143 (46%), Gaps = 6/143 (4%) Query: 1 MKPA--ARRRARECAVQALYSWQLSQNDIADVEYQFLAE-QDVKDVDVLYFRELLAGVAT 57 MK AR R R+ A +Y ++ ++ F ++ + + + L G A Sbjct: 1 MKKNFKARTRGRKFAYMMMYQLIIADYTPKEITKTFWNSVKEEDESVIEFANRLFTGAAE 60 Query: 58 NTAYLDGLMKPY--LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG 115 + D ++ Y E +G+VEK +LR+A++EL R + PY IN+ + LA+ + Sbjct: 61 SVDANDEIICRYIRSDWTYERMGEVEKDILRVAVHEL-FRQEAPYYAVINDFVTLARKYS 119 Query: 116 AEDSHKFVNGVLDKAAPVIRPNK 138 E S VNG+L+ + ++ Sbjct: 120 DEKSASLVNGILENIRKNFKLSE 142 >UniRef50_C6I119 Transcription antitermination factor (NusB) n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6I119_9BACT Length = 180 Score = 100 bits (250), Expect = 2e-20, Method: Composition-based stats. Identities = 35/142 (24%), Positives = 69/142 (48%), Gaps = 6/142 (4%) Query: 3 PAARRRA----RECAVQALYSWQ-LSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVAT 57 P++RRRA R +Q L++ + S+ + + + + Y L A + Sbjct: 9 PSSRRRALSAARGKVLQRLFAEEYESRPSPDPLLKDLIGWEGEDPMANAYADRLYAEILF 68 Query: 58 NTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 +D +++ L L +V++ +LRI L E+ +P++V+++EA++LA F Sbjct: 69 RKPEIDAVIEELARGWSLPRLTRVDRNILRIGLCEILFDPAMPFRVSVHEALDLAHRFSD 128 Query: 117 EDSHKFVNGVLDKAAPVIRPNK 138 ++ F+NG+L +A P K Sbjct: 129 PEAVSFLNGILHEAGVRHAPEK 150 >UniRef50_C2KZE7 Putative uncharacterized protein n=1 Tax=Oribacterium sinus F0268 RepID=C2KZE7_9FIRM Length = 185 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 34/143 (23%), Positives = 58/143 (40%), Gaps = 16/143 (11%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVD---------------VLYF 48 +R R+ + L+S + + + +D D + Sbjct: 1 MNKREERDHKFKLLFSTLFYPEEGKQEQLSHYSYSKEEDEDFLLPEKEEEHLSEEEEAFL 60 Query: 49 RELLAGVATNTAYLDGLMKPYLSRLL-EELGQVEKAVLRIALYELSKRSDVPYKVAINEA 107 + + + +LD + + + + VLR+ALYEL + + P KV NEA Sbjct: 61 SQEVMKILERLPHLDERINAVTEGWTTSRMSKTDLTVLRLALYELEYQEETPDKVVFNEA 120 Query: 108 IELAKSFGAEDSHKFVNGVLDKA 130 +E+AK +G DS FVNGVL + Sbjct: 121 VEIAKKYGGADSGSFVNGVLARI 143 >UniRef50_D1R8R5 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R8R5_9CHLA Length = 417 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 54/127 (42%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 + ARE A A+YS+ +++ + ++ +D + +++ G LD Sbjct: 1 MPQIHAREAAFLAVYSFLKEGKFLSESLENWKQKESPSSLDFSFAQDIAYGSVRMALALD 60 Query: 64 GLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 + K R L E+++LR A+Y+ + + P E+ LAK + F+ Sbjct: 61 YIAKSTAERQSLSLKVKERSLLRTAIYQAAFQRSTPLYAIGQESGNLAKKYCHPTFSSFL 120 Query: 124 NGVLDKA 130 N +L K Sbjct: 121 NALLRKL 127 >UniRef50_C6W6R3 NusB antitermination factor n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W6R3_DYAFD Length = 388 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 37/131 (28%), Positives = 55/131 (41%), Gaps = 7/131 (5%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 R A++ L + + + E D + EL V + D ++ Sbjct: 251 IRSLAIKTLRTADDAHTFQLAPLTKDWEE------DRAFVEELCKIVIRESDQYDVYLED 304 Query: 69 YLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 L LE + V+ +L+ AL EL +P KV INE IE+AK + S KFVNGVL Sbjct: 305 QLKNWELERIALVDLIILKTALAELIHFPGIPVKVTINEFIEIAKRYSTPKSGKFVNGVL 364 Query: 128 DKAAPVIRPNK 138 D + + Sbjct: 365 DVLSVKLAKEG 375 >UniRef50_A4CML6 NusB family protein n=2 Tax=Flavobacteria RepID=A4CML6_9FLAO Length = 366 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 5/118 (4%) Query: 23 SQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVE 81 + + L D+ + +LL A L+ ++ E + +++ Sbjct: 244 QGAPESYLLPALLK----NSEDMEFAMDLLRKTLNKNAALEAEIEGKTPNWDKERIAEID 299 Query: 82 KAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 +L++ + EL +P +V INE +E+AK + S F+NG+LDK R + Sbjct: 300 GILLKMGIAELLYFPSIPERVTINEYLEIAKEYSTPKSSIFINGILDKLIREYREAGR 357 >UniRef50_C0WL14 Transcription antitermination protein NusB n=1 Tax=Corynebacterium accolens ATCC 49725 RepID=C0WL14_9CORY Length = 211 Score = 99.7 bits (248), Expect = 3e-20, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 6/124 (4%) Query: 15 QALYSWQLSQNDIADVEYQFLAEQDVK----DVDVLYFRELLAGVATNTAYLDGLMKPYL 70 LY + D + +A Y + ++ GVA +D + YL Sbjct: 27 DILYEAENRDVDPVAIVEDRVALAREDRHAVAPIADYTKVIVQGVAEELDAIDDTISRYL 86 Query: 71 --SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 + L + V++A+LR++++EL DVP A+ E +ELA + + + +++ VLD Sbjct: 87 SQNWELHRIPAVDRAILRLSVWELLFNPDVPTATAVVEGVELASQYSHDQAAPYIHAVLD 146 Query: 129 KAAP 132 A Sbjct: 147 DVAQ 150 >UniRef50_B8J1H7 NusB/RsmB/TIM44 n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8J1H7_DESDA Length = 526 Score = 99.7 bits (248), Expect = 3e-20, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 47/152 (30%), Gaps = 24/152 (15%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQ----------------------DVKDVDV 45 R A++AL L + D Sbjct: 15 NGRTAALRALLLVD-DGLSAQQALASVLDAPVAHGASGNSREKSHTANAGRCQGLSAQDR 73 Query: 46 LYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAIN 105 EL+ G L+ L+ L R + L + + +L +A+Y L + VP + Sbjct: 74 ALCTELVYGCLRTELRLNFLLGRVLPRP-QGLPRPMQILLALAVYGLLFQDKVPSHAVVY 132 Query: 106 EAIELAKSFGAEDSHKFVNGVLDKAAPVIRPN 137 EA+E A++ + + NG L + Sbjct: 133 EAVEQARALFGQGLARVANGALRSLQRMGEEP 164 >UniRef50_B7CB38 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CB38_9FIRM Length = 397 Score = 99.7 bits (248), Expect = 3e-20, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 39/122 (31%), Gaps = 6/122 (4%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 R+ +AL L +V + D + G N Y Sbjct: 1 MRKWIWKALDEVVNKDVYSNLYLRNHL--HEVDEKDRALATRIFYGTIQNYRYCKACWSK 58 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 Y+ L V +L ++ Y+L VP +N+A+ +AK N VL Sbjct: 59 YVKNKLNPKMDV---LLTMSTYQLLFLDKVPSYAIVNDAVNIAKKI-NMKYAGLTNAVLH 114 Query: 129 KA 130 K Sbjct: 115 KV 116 >UniRef50_C7MNL0 tRNA/rRNA cytosine-C5-methylase n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MNL0_CRYCD Length = 500 Score = 99.7 bits (248), Expect = 3e-20, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 3/122 (2%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR AV+ + + +D+ L + + D + R L+ GV LD ++ Sbjct: 7 ARRLAVEIGRDARERKAFASDLLDARLGKSGLNAADRAFTRVLVLGVVATVGTLDEVIGR 66 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 L R + +G + LR++ YE+ + VA+++ +ELA +F + + N VL Sbjct: 67 CLDRAGD-VGLQLRDALRVSTYEIIFLNK-DAYVAVDQGVELA-AFVQPRARRLANAVLR 123 Query: 129 KA 130 + Sbjct: 124 RI 125 >UniRef50_UPI0001BC65B2 16S rRNA m(5)C 967 methyltransferase n=2 Tax=Fusobacterium RepID=UPI0001BC65B2 Length = 440 Score = 99.7 bits (248), Expect = 3e-20, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 44/124 (35%), Gaps = 4/124 (3%) Query: 16 ALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLE 75 AL + + K + + E+ GV N YLD ++ + E Sbjct: 9 ALLQEVDQGKYSNIALNELFHRKVFKKGEKNFITEVFYGVIRNKIYLDYMISQKVK---E 65 Query: 76 ELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIR 135 + + R++ Y++ K I E +ELAK +FVNGVL Sbjct: 66 VKKDWLQQLFRLSFYQIRFMKS-DDKGVIWEGVELAKKKYGVSVSRFVNGVLRNFQRSFI 124 Query: 136 PNKK 139 ++ Sbjct: 125 EEEE 128 >UniRef50_C3WZH3 Transcription antitermination protein NusB n=4 Tax=Fusobacterium RepID=C3WZH3_9FUSO Length = 157 Score = 99.7 bits (248), Expect = 3e-20, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 63/140 (45%), Gaps = 10/140 (7%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAE--------QDVKDVDVLYFRELLAGVATN 58 R ARE + ++ +L+ + +++ F + + + + + + G+ N Sbjct: 17 RLAREEVFKLVFGAELTGSSSDELKQDFSIYLQNDEEFINALSEKQLEFIKNSINGIVEN 76 Query: 59 TAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 + ++K E +G +E+++L + YE + P +V NE +ELAK +G E Sbjct: 77 YDNIKDVIKKNTQNWTYERIGVIERSLLIVGTYEFL-IKNTPIEVIANEIVELAKEYGNE 135 Query: 118 DSHKFVNGVLDKAAPVIRPN 137 S++F+NG+L Sbjct: 136 KSYEFINGILANIEKAKNKG 155 >UniRef50_A3VQU7 TRNA and rRNA cytosine-C5-methylase-like protein n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VQU7_9PROT Length = 455 Score = 99.3 bits (247), Expect = 3e-20, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 46/129 (35%), Gaps = 3/129 (2%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR A+ L + + + A +D++ D + R L+ V LD Sbjct: 30 ARRAALDILLAI-RRGQALDMAMAESEAFEDLEGADRGFARTLIMAVLRRQNTLDEAYGT 88 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE-DSHKFVNGVL 127 +L R L+ +LR+A ++ VP A ++LAK K +N + Sbjct: 89 FLDRPLKSTQGTVITLLRLAAAQIL-LLGVPPHAATATTVDLAKERRDSAGFAKLLNALC 147 Query: 128 DKAAPVIRP 136 + Sbjct: 148 RRMVEKGPS 156 >UniRef50_Q88B41 Ribosomal RNA small subunit methyltransferase B n=23 Tax=Gammaproteobacteria RepID=RSMB_PSESM Length = 448 Score = 99.3 bits (247), Expect = 3e-20, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 40/114 (35%), Gaps = 3/114 (2%) Query: 23 SQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEK 82 + + L + ++ D ++L G A L L L + + + Sbjct: 17 GKASLNSSLPTQLDKVEL--RDRGLTQDLAFGTARWQPRLSALAAKLLQKPFKAADADVE 74 Query: 83 AVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRP 136 A+L + LY+L S +P AI E + A + +N VL A Sbjct: 75 ALLLVGLYQLFY-SRIPAHAAIGETVGCADKLKKPWAKGLLNAVLRNAQRDGEA 127 >UniRef50_C7RHU9 NusB antitermination factor n=2 Tax=Anaerococcus RepID=C7RHU9_ANAPD Length = 127 Score = 99.3 bits (247), Expect = 4e-20, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 62/130 (47%), Gaps = 6/130 (4%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 R RE + +Y + I+ +E A +++ D + R+ ++ N + +D Sbjct: 1 MNRVEQREWVFKLIYQ-----DSISKIEDIDKALEELDLTDEDFVRKSISSFLNNFSSID 55 Query: 64 GLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 + L + L +V +++L +++ E+ D+P V+INEA+ LAK + ED +K V Sbjct: 56 EKLTSNLDSKRKRLSKVLRSILYLSINEMYFM-DIPVSVSINEAVNLAKKYSDEDDYKLV 114 Query: 124 NGVLDKAAPV 133 N +L Sbjct: 115 NSILGSIVRK 124 >UniRef50_A1B2A9 NusB antitermination factor n=43 Tax=Rhodobacterales RepID=A1B2A9_PARDP Length = 166 Score = 98.9 bits (246), Expect = 4e-20, Method: Composition-based stats. Identities = 40/138 (28%), Positives = 61/138 (44%), Gaps = 14/138 (10%) Query: 13 AVQALYSWQLSQNDIADVEYQFL------AEQDVK----DVDVLYFRELLAGVATNTAYL 62 AVQAL+ + + V+ +FL ++D + D F ++ T + + Sbjct: 28 AVQALFQMEAAGQSADRVQREFLNWRIGREDEDDDIVSAEADQALFTRIVDDAVTWQSKI 87 Query: 63 DGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE-DS 119 D + L ++ + V ++V R A EL P KV I E + LA++F AE Sbjct: 88 DQMTDRALVAKWPIDRIDPVLRSVFRAAGAELV-TPKTPPKVVITEYVRLAQTFFAEGRE 146 Query: 120 HKFVNGVLDKAAPVIRPN 137 KFVN VLD A RP Sbjct: 147 SKFVNAVLDHMAREARPE 164 >UniRef50_UPI0001C31BDA sun protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31BDA Length = 444 Score = 98.9 bits (246), Expect = 5e-20, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 48/127 (37%), Gaps = 1/127 (0%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR+ A L + + D + L G LD +++ Sbjct: 11 ARQVAAAVLRRVESDGAYADRALAGEARRAGLDARDHAFAMALAFGAVQRRRTLDHVIER 70 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 R + +L + LR+ L +L V A+++++ELAK+ G +K VN VL Sbjct: 71 LARRPVGQLDPPVRDALRLGLLQLLFLGGVAPHAAVDQSVELAKAAGGPG-YKLVNAVLR 129 Query: 129 KAAPVIR 135 + A Sbjct: 130 RGAREGP 136 >UniRef50_A6UED5 Fmu (Sun) domain protein n=14 Tax=Rhizobiales RepID=A6UED5_SINMW Length = 470 Score = 98.9 bits (246), Expect = 5e-20, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 49/134 (36%), Gaps = 5/134 (3%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQ---DVKDVDVLYFRELLAGVATNTAYLDG 64 ++R+ A + L + + + + ++ D D R +L + + Sbjct: 38 KSRQAAAKILAAVVDRKTPLDGMLDPERGNPVYRELNDADRALVRAILNSALRHLPRIRA 97 Query: 65 LMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAK-SFGAEDSHKFV 123 + L L E + + VL +A ++ DVP A++ A+E A+ V Sbjct: 98 AIDSLLQTPLPEGARALEHVLTVAAAQILYL-DVPDHSAVDLAVEQAQSDPRNRRFASLV 156 Query: 124 NGVLDKAAPVIRPN 137 N VL + + Sbjct: 157 NAVLRRLSREKEAI 170 >UniRef50_Q1N3W2 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent (Fragment) n=1 Tax=Bermanella marisrubri RepID=Q1N3W2_9GAMM Length = 184 Score = 98.5 bits (245), Expect = 6e-20, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 52/135 (38%), Gaps = 5/135 (3%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MKP R A L + + + +D+ D + + G + Sbjct: 1 MKPL--HNVRSIAAVILLGVIDEKKSLNTLLPYH--SRDLLPEDKAQLQSICFGACRHFF 56 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 ++ L K L + L E ++ +++L I LY+L+ S +P AI++ + + Sbjct: 57 SINALSKMLLDKPLPEKARLTQSLLWIGLYQLAH-SHMPEHAAIHQTVAACDNLKQTPFK 115 Query: 121 KFVNGVLDKAAPVIR 135 K +N +L + Sbjct: 116 KLINAILRRFQREKD 130 >UniRef50_Q607V0 N utilization substance protein B homolog n=1 Tax=Methylococcus capsulatus RepID=NUSB_METCA Length = 198 Score = 98.1 bits (244), Expect = 7e-20, Method: Composition-based stats. Identities = 51/111 (45%), Positives = 70/111 (63%) Query: 28 ADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRI 87 Q ++ V DV V YF+ELL GVA N A LD + YL R ++E+ VE+A+LRI Sbjct: 81 DVTLEQRASQCQVPDVQVGYFKELLHGVANNLALLDAALAKYLDRPIDEVDPVERAILRI 140 Query: 88 ALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 YE +R + PY+V +NEAI LAK FGA S+++VNG+LD+ A R + Sbjct: 141 GCYEFMRRPETPYRVILNEAINLAKEFGAAQSYRYVNGILDRVAHECRAVE 191 >UniRef50_A5WI31 Fmu (Sun) domain protein n=3 Tax=Psychrobacter RepID=A5WI31_PSYWF Length = 528 Score = 97.8 bits (243), Expect = 9e-20, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 47/133 (35%), Gaps = 6/133 (4%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLM 66 + R + L S Q ++ + L + D + LL + L+ Sbjct: 12 KNVRVAVINTLLSIQQ-GQSLSGLLDPLL--NSLNGDDKGFAHALLLTTLRHWHATARLL 68 Query: 67 KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGV 126 ++E+ + +++ + +L +V AI+E +E K + VN V Sbjct: 69 DSLADNPIDEIE--VRTTIQLGITQLLYL-NVADHAAIHETVEAVKHIDYARASGLVNAV 125 Query: 127 LDKAAPVIRPNKK 139 L K A +K Sbjct: 126 LRKVAKNPNKFRK 138 >UniRef50_B9ZKR1 Sun protein n=2 Tax=Chromatiales RepID=B9ZKR1_9GAMM Length = 451 Score = 97.4 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 45/132 (34%), Gaps = 3/132 (2%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLM 66 R R+ A++A L + + + D + + L L L+ Sbjct: 17 RSPRQRALEAAEGVVLQGHSLTRAVEHATE--GLNARDAAWVQALAYTTLRWYPQLSALV 74 Query: 67 KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGV 126 +L R L + V +L L EL A+ E ELA++ + +N V Sbjct: 75 NGFLERPLRKKDAVIGVLLAQGLAELMHF-STRDHAAVRETAELARAIHRPGAVGLINAV 133 Query: 127 LDKAAPVIRPNK 138 L +A + Sbjct: 134 LRRAQREQDALE 145 >UniRef50_Q14PA1 Putative ribosomal rna small subunit methyltransferase protein n=1 Tax=Spiroplasma citri RepID=Q14PA1_SPICI Length = 423 Score = 97.4 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 50/131 (38%), Gaps = 4/131 (3%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNTAYLDGLM 66 +ARE A L+ + + + D D D ++ G N YL+ + Sbjct: 2 QAREVAWNILWKIFAKNKFSNHLLSNIVEQNDNFIDQDKTLIYRIVYGTLKNKLYLEYIA 61 Query: 67 KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGV 126 ++ ++ Q + +L +++Y+ +P +NEA+ ++KS F+N Sbjct: 62 NQFIES--KKTNQKLQILLWMSIYQFRFLDRIPNYAIVNEAVNISKSVS-PKYAGFINTT 118 Query: 127 LDKAAPVIRPN 137 L K Sbjct: 119 LKKIFDSKDEI 129 >UniRef50_C0N5F9 Ribosomal RNA small subunit methyltransferase B n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N5F9_9GAMM Length = 406 Score = 97.4 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 1/101 (0%) Query: 38 QDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSD 97 + D + ++++L GV L L L + + A+ LY+L Sbjct: 6 PQLNDNERSFYQQLCYGVLRLHPTLIFLGNQLLKKPFKNKDADIAALFLTGLYQLRDL-R 64 Query: 98 VPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 P AI+E + AK G + + +N L + Sbjct: 65 TPSHAAISETVNAAKKLGKQWATGLLNACLRNYQRQHTELE 105 >UniRef50_Q2S463 Ribosomal RNA small subunit methyltransferase B n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S463_SALRD Length = 427 Score = 97.4 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 29/108 (26%), Positives = 43/108 (39%), Gaps = 1/108 (0%) Query: 28 ADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRI 87 D L +D REL+AGV +LD ++ + + + +LR+ Sbjct: 4 DDAFVDKLTIEDADARTRRQARELVAGVTRQRRWLDFVLGEAYHGDYDSMEHRLQEILRL 63 Query: 88 ALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIR 135 LYEL P A++E +ELAK + VNGVL Sbjct: 64 GLYELLF-QSTPTHAAVDEYVELAKQALRPGAGNLVNGVLRTIDRDRE 110 >UniRef50_C8NZ84 rRNA methylase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZ84_ERYRH Length = 404 Score = 97.0 bits (241), Expect = 2e-19, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 44/128 (34%), Gaps = 7/128 (5%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R + + L V + D+ D + + N+ +LD + Sbjct: 3 RIESYKVLSEVYFKGRHAHLVLKEL----DLPAQDQAFVSAFVYATLQNSLFLDYQYEDL 58 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 + + L + + V+++ + K +P ++E ++L K+ G VN VL K Sbjct: 59 VDKKL---PKEVRLVIKMGCAQYFKMDKIPDYALVSETVDLCKAIGKHRYSGVVNAVLKK 115 Query: 130 AAPVIRPN 137 Sbjct: 116 VIERNERE 123 >UniRef50_C7PI91 NusB antitermination factor n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PI91_CHIPD Length = 309 Score = 97.0 bits (241), Expect = 2e-19, Method: Composition-based stats. Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 1/101 (0%) Query: 40 VKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDV 98 + + Y RELL V Y L+KP L E + V+ ++ + + E + Sbjct: 200 ISREKLEYARELLLTVLDKKEYCLELIKPKLQNWDPERIAAVDMLLMEMGVCEFLYFPTI 259 Query: 99 PYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 P KV INE I+LAK++ S +FVNG+LD + + Sbjct: 260 PTKVTINEYIDLAKAYSTPQSGQFVNGILDNILKDLDQANQ 300 >UniRef50_C9L054 NusB family protein n=34 Tax=Bacteroidales RepID=C9L054_9BACE Length = 308 Score = 97.0 bits (241), Expect = 2e-19, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 55/129 (42%), Gaps = 6/129 (4%) Query: 12 CAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLS 71 ++ + + + ++ +F D D + R L N+ Y L+ Sbjct: 181 FVLKTIKRFDEKKGANQELLPEFK-----DDEDQEFARRLFRRTILNSDYYRHLISENTK 235 Query: 72 RL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 L+ + ++ +++ AL E+ ++P V++NE +E+AK + S F+NG LD Sbjct: 236 NWDLDRIAFMDIIIMQTALAEILSFPNIPVSVSLNEYVEIAKLYSTSKSGSFINGTLDGI 295 Query: 131 APVIRPNKK 139 ++ K Sbjct: 296 VNQLKKEGK 304 >UniRef50_A6LN58 NusB/RsmB/TIM44 n=2 Tax=Thermosipho RepID=A6LN58_THEM4 Length = 416 Score = 97.0 bits (241), Expect = 2e-19, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 11/121 (9%) Query: 12 CAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLS 71 A + L S + F + +F+ L+ GV YLD ++ L Sbjct: 7 IAYRLLRKKFRSGIFSTEFYQAFSYV-----EEKAFFKNLIFGVLRKQEYLDWVINSLLK 61 Query: 72 RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAA 131 + +++ + +LRI Y+L + P +NE +EL + VN +L K + Sbjct: 62 K--KDIPPSIRTILRIGTYQLLFTNK-PSYSIVNETVELVEKKS---FKGLVNAILRKIS 115 Query: 132 P 132 Sbjct: 116 K 116 >UniRef50_UPI0001699525 transcription antitermination protein NusB n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001699525 Length = 182 Score = 97.0 bits (241), Expect = 2e-19, Method: Composition-based stats. Identities = 42/86 (48%), Positives = 58/86 (67%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 R +AR AVQA+Y WQ++ D+A + QFL EQD+ +V YF++LL GV N LDG Sbjct: 4 KRSQARRHAVQAIYQWQMAGQDLAAIYEQFLGEQDLSQFEVPYFKDLLHGVPNNLQELDG 63 Query: 65 LMKPYLSRLLEELGQVEKAVLRIALY 90 L+KP L R +E + VE+AVLR+ +Y Sbjct: 64 LLKPALDRAIESVDPVERAVLRLGVY 89 >UniRef50_Q9CHN4 N utilization substance protein B homolog n=1 Tax=Lactococcus lactis subsp. lactis RepID=NUSB_LACLA Length = 192 Score = 96.6 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 3/102 (2%) Query: 33 QFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLS--RLLEELGQVEKAVLRIALY 90 + ++ YF +L+ GV L+ + YL+ L VE+A+L+++ Y Sbjct: 92 NYDNDRPEDLEAPEYFTQLVDGVLDKKEDLEANISKYLTKTWSFSRLTLVEQAILQVSSY 151 Query: 91 ELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAP 132 E+ ++ P VA+NEA+EL+K F E S +F+NGVL Sbjct: 152 EILY-TETPDVVAVNEAVELSKDFSDEKSSRFINGVLTNFLK 192 >UniRef50_D1R943 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R943_9CHLA Length = 187 Score = 96.6 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 37/127 (29%), Positives = 53/127 (41%), Gaps = 1/127 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 RE LYS + ++ + E V E + V A +D L+ Sbjct: 9 REVVFVLLYSQDCGRVSEQELVELVMKELAVTKKTAYSALEKVELVLEKKAEIDDLIANT 68 Query: 70 LS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 E + VEK VLR+ +YE+ +P KVAI EAI L++ F +S FVN +LD Sbjct: 69 SREYRFERIQTVEKNVLRLGIYEMLFDDSIPPKVAIAEAIRLSRKFSTPESATFVNALLD 128 Query: 129 KAAPVIR 135 Sbjct: 129 HIYQTKE 135 >UniRef50_B5YIL4 Sun protein n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YIL4_THEYD Length = 441 Score = 96.6 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 5/129 (3%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R+ AV+ L + ++ + + + D + E++ GV N Y+D L++ + Sbjct: 7 RKVAVEVLNNVVGTKKPLKFALTENI-LSMFDKADRAFLLEVIYGVLRNLYYIDWLLEDF 65 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 E+L LR A+Y+L +P NE + + KSF + VN +L Sbjct: 66 YKSR-EKLSMYTINNLRCAIYQLVFM-HIPAYAVANETVNVEKSFNGK--PNVVNAILRN 121 Query: 130 AAPVIRPNK 138 + ++ Sbjct: 122 FLRKYQADE 130 >UniRef50_D2QU07 NusB antitermination factor n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QU07_9SPHI Length = 378 Score = 96.6 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 7/132 (5%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 R A++ L S Q + + E ++ + L N A + L+ Sbjct: 241 VRGLAIRTLKSVQSATGLQLEPLTDDWEEDEL------FLNTLFEKSIENDADYEQLLAD 294 Query: 69 YLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 L +E + ++K +L++A+ EL ++P KV INE IELAK++ S KFVNG+L Sbjct: 295 QLKNWDVERVAMIDKIILKLAVCELLSFPNIPVKVTINEYIELAKAYSTPKSGKFVNGIL 354 Query: 128 DKAAPVIRPNKK 139 D + + + + Sbjct: 355 DNLSEKLLASGR 366 >UniRef50_B8J9P4 NusB/RsmB/TIM44 n=4 Tax=Anaeromyxobacter RepID=B8J9P4_ANAD2 Length = 455 Score = 96.6 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 48/128 (37%), Gaps = 2/128 (1%) Query: 9 ARECAVQALYSWQLSQNDIA-DVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 AR A L + + ++ A + + EL+ G LD + Sbjct: 12 ARGIAFDVLRRVEEGGAYASRALDAALGAAGALDPREAGLATELVYGTLRRALALDAALA 71 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 P+ R L EL + LR+ Y+L P A+ E + LAK+ + +VN VL Sbjct: 72 PHSRRALAELDPAARVALRLGAYQLLVL-GTPAHAAVGETVALAKAVDHGRAAGYVNAVL 130 Query: 128 DKAAPVIR 135 + R Sbjct: 131 RSLSRAAR 138 >UniRef50_A8RBL8 Putative uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=A8RBL8_9FIRM Length = 126 Score = 96.6 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 7/130 (5%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 +R + RE A+ +LY L DI + Y+ ++ + + Sbjct: 2 TLSRHKLREIAMTSLYQHFLLSKDIKECVYENTQSNEIDP----FLYTITIDAIRYKDTY 57 Query: 63 DGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 G + L E LG VEKA+L +A EL + P + I+EA+ LAK + ED++ Sbjct: 58 VGHIDETLRDDWTFERLGYVEKAILLMAACELDFET-APKAIVIDEAVNLAKKYCDEDTY 116 Query: 121 KFVNGVLDKA 130 + +NGVLD+ Sbjct: 117 RLINGVLDRL 126 >UniRef50_C5CGV6 NusB/RsmB/TIM44 n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CGV6_KOSOT Length = 336 Score = 95.8 bits (238), Expect = 3e-19, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 6/123 (4%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R+ A++ L + + +A + + ++ L+ +D ++ + Sbjct: 5 RQKALETLAFFDQNGYIPFRKVE--IAISTLSSIGRRFYMNLVMETLRKRIQIDYILNQF 62 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 L + E+L LR+ + +L VP AI+ ++EL K+ K VN VL K Sbjct: 63 LKKP-EKLPAPVMNALRLGVTQLFYMDSVPEFAAIHSSVELLKAKS---FKKLVNAVLRK 118 Query: 130 AAP 132 + Sbjct: 119 ISK 121 >UniRef50_Q603G1 Sun protein n=1 Tax=Methylococcus capsulatus RepID=Q603G1_METCA Length = 431 Score = 95.8 bits (238), Expect = 4e-19, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 48/131 (36%), Gaps = 6/131 (4%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 ++R A AL+ + ++ + + L D + + L GV LD L+ Sbjct: 4 KSRTLAAAALHDVVVDRHSLTWALGKRLPSLP-DARDRAFVQSLCYGVLRAFETLDFLLG 62 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 ++ + + + I L++L +V A++E +E A + +N +L Sbjct: 63 RLATKPIR--DPEIRLLALIGLHQLRSM-NVKPHAAVSETVEAAGRKS--WAKPLLNAIL 117 Query: 128 DKAAPVIRPNK 138 + Sbjct: 118 RNYLRRKEELE 128 >UniRef50_Q0VTE3 tRNA and rRNA cytosine-C5-methylase, putative n=2 Tax=Alcanivorax RepID=Q0VTE3_ALCBS Length = 447 Score = 95.8 bits (238), Expect = 4e-19, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 2/123 (1%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R AV+AL + D + + L + ++ D R++ GV + L+ + Sbjct: 17 RLSAVRALNRVLPGKGD-GESLREVLRDFPLQGSDGGQMRDICFGVCRHLRPLNHWLNQQ 75 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 LS+ L+ Q + L LYEL + P +N +L + A + N VL K Sbjct: 76 LSKPLKGSAQPVRLALLAGLYELWFSNR-PAHAIVNAYPQLCRKLKAPWAAGLSNAVLRK 134 Query: 130 AAP 132 A+ Sbjct: 135 ASQ 137 >UniRef50_C2D8V4 Putative uncharacterized protein n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D8V4_9ACTN Length = 537 Score = 95.8 bits (238), Expect = 4e-19, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 53/123 (43%), Gaps = 3/123 (2%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 +R A +AL + + + D F A + + + + ++ GV ++ + +D ++ Sbjct: 9 SRTVAFKALCALRKNTTYAQDFLKHFDAFCALLQDEKSFVQHVVCGVISSQSMVDKILAQ 68 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 Y+ R LR+A YEL R +++ +EL + + FVN VL Sbjct: 69 YVKR-FAHQPYKVLICLRMATYELVYRQ-TAAYAVVSQYVELVR-LVDKRGASFVNAVLH 125 Query: 129 KAA 131 + A Sbjct: 126 RIA 128 >UniRef50_B6GC41 Putative uncharacterized protein n=2 Tax=Collinsella RepID=B6GC41_9ACTN Length = 495 Score = 95.8 bits (238), Expect = 4e-19, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 3/125 (2%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR + AL Q S + D+ + D + L GV LD + Sbjct: 29 ARRATLDALMQAQESGRYVRDIFAHGDQLGRLSSRDAAFALRLALGVTATEGCLDDALNS 88 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 +L++ + + + LRI+ YE D P V +++ +EL +S A+ + N VL Sbjct: 89 HLAKPGK-VSARVRCCLRISAYEALYL-DTPADVVVSQGVELVRS-CAKSASGLANAVLR 145 Query: 129 KAAPV 133 + Sbjct: 146 RVCEN 150 >UniRef50_B0JGZ3 N utilization substance protein B homolog n=12 Tax=Cyanobacteria RepID=NUSB_MICAN Length = 217 Score = 95.8 bits (238), Expect = 4e-19, Method: Composition-based stats. Identities = 31/98 (31%), Positives = 55/98 (56%), Gaps = 2/98 (2%) Query: 43 VDVLYFRELLAGVATNTAYLDGLM-KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYK 101 Y EL+ V A ++ + + L L ++++ +L+IA+ E+ D+P K Sbjct: 115 EVREYALELIGTVYRRRAEIEQELTGALVDWQLHRLPRIDRDILQIAVAEMLYL-DLPQK 173 Query: 102 VAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 VAINEAIELAK + ++ ++F+NGVL + + ++K Sbjct: 174 VAINEAIELAKRYSDDEGYRFINGVLRRVTNKLNESEK 211 >UniRef50_Q030T8 Transcription termination factor n=3 Tax=Lactococcus lactis RepID=Q030T8_LACLS Length = 325 Score = 95.5 bits (237), Expect = 4e-19, Method: Composition-based stats. Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 3/103 (2%) Query: 33 QFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALY 90 + ++ YF +L+ GV L+ + YL + L VE+A+L+++ Y Sbjct: 223 NYDNDRAEDLEAPEYFTQLVDGVLEKKEDLEINISKYLAKNWSFSRLTLVEQAILQVSTY 282 Query: 91 ELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPV 133 E+ +D P VA+NEAIEL+K F E S +F+NGVL Sbjct: 283 EILF-TDTPNVVAVNEAIELSKDFSDEKSSRFINGVLTNFLKE 324 >UniRef50_C9UP93 Fmu domain-containing protein n=1 Tax=Brucella abortus bv. 3 str. Tulya RepID=C9UP93_BRUAB Length = 252 Score = 95.5 bits (237), Expect = 4e-19, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 47/131 (35%), Gaps = 5/131 (3%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQD---VKDVDVLYFRELLAGVATNTAYLDGL 65 AR CA + L + + + ++ D R +L N ++ Sbjct: 31 ARLCAARLLGAVIEKNTSLDGLTDNAHGHPQYLALEPRDRALVRAILGSALRNRGSIERA 90 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAK-SFGAEDSHKFVN 124 + L R L E K +L +A+ ++ D+P A++ A+E A VN Sbjct: 91 INKRLDRPLPENAVALKHLLHVAVAQIFYL-DLPDHSAVDLAVEAANSDPRNRKYAGLVN 149 Query: 125 GVLDKAAPVIR 135 +L + A Sbjct: 150 ALLRRLARNKE 160 >UniRef50_C7M0X2 NusB antitermination factor n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M0X2_ACIFD Length = 145 Score = 95.1 bits (236), Expect = 7e-19, Method: Composition-based stats. Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 11/130 (8%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 RE ++ LY AD+ + + RE + G+ + +D + + Sbjct: 16 RERVLELLYEADTKGEAPADLLR---------GDEPAFIRERIRGLTERRSEIDAQLTAH 66 Query: 70 LSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 + LE L +++A+LR+A EL + P VAI EA++LA + E S FVNGVL Sbjct: 67 VIGWQLERLAPIDRAILRLATAELL-EASTPPSVAIAEAVKLADRYSTERSAAFVNGVLA 125 Query: 129 KAAPVIRPNK 138 A I Sbjct: 126 SIAVDIAGEG 135 >UniRef50_P74395 N utilization substance protein B homolog n=16 Tax=Cyanobacteria RepID=NUSB_SYNY3 Length = 221 Score = 94.3 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 2/93 (2%) Query: 43 VDVLYFRELLAGVATNTAYLDGLM-KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYK 101 + EL+ V +D + + + L L ++++ +LR+A+ EL VP K Sbjct: 118 EVRKFALELIGTVCRRRQQIDEQLQEAMVDWQLSRLAKIDQDILRLAIAELDYL-GVPQK 176 Query: 102 VAINEAIELAKSFGAEDSHKFVNGVLDKAAPVI 134 VAINEA+ELAK + +D H+F+NGVL + Sbjct: 177 VAINEAVELAKRYSGQDGHRFINGVLRRVTEKK 209 >UniRef50_B8DMM9 NusB/RsmB/TIM44 n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DMM9_DESVM Length = 530 Score = 93.9 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 1/100 (1%) Query: 33 QFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYEL 92 L + D EL+ G + + L++ +L+ E+L Q L +A +E+ Sbjct: 82 SALRHAGISRQDAALATELVYGYLRSEIRISWLLRRFLTAP-EKLPQEALLTLGVAAHEI 140 Query: 93 SKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAP 132 +P A++ A+ + K N VL A Sbjct: 141 VHLDRIPDYAAVDWAVTHIRQRFGPGLGKLANAVLRNVAR 180 >UniRef50_Q0C0J1 N utilization substance protein B homolog n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=NUSB_HYPNA Length = 154 Score = 93.9 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 10/133 (7%) Query: 14 VQALYSWQLSQNDIADVEYQFLAEQ--------DVKDVDVLYFRELLAGVATNTAYLDGL 65 VQALY + ++ +F+ ++ V+D D F+ ++ V + A +D Sbjct: 22 VQALYEMEQTEKSARATIREFMEDRLGLGPDGTPVEDADPDLFKSIVNSVVEHQAKIDTA 81 Query: 66 MKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 + L+ L L +A+LR E ++ + ++E + LA F E KF Sbjct: 82 ILARLAEGWKLTRLDATMRALLRAGAAEFIAHQELSDAIILSEYVSLAHDFFDEGDAKFA 141 Query: 124 NGVLDKAAPVIRP 136 N VL +R Sbjct: 142 NAVLQNMGRDLRA 154 >UniRef50_A1ZKP0 NusB antitermination factor n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZKP0_9SPHI Length = 462 Score = 93.9 bits (233), Expect = 2e-18, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 11/141 (7%) Query: 5 ARRRARECAVQALYSW----QLSQNDIADVEYQFLAEQDVK------DVDVLYFRELLAG 54 R+ + AV+ + + + D + E ++ D DV++++ L Sbjct: 305 NRKVVQSMAVKTIKAIMGDTEEEDGDAEETEITINKNFELSPLSKNWDEDVVFYKNLYNF 364 Query: 55 VATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKS 113 + ++ +E L ++K +L++A+ E+ +P KV INE IELAK+ Sbjct: 365 NVEGNQRYEDIIAKKTKNWDIERLALIDKVILKMAICEMINFYSIPVKVTINEYIELAKT 424 Query: 114 FGAEDSHKFVNGVLDKAAPVI 134 + S KFVNG+LD A + Sbjct: 425 YSTPKSKKFVNGLLDSIAQDL 445 >UniRef50_C2CFC5 Possible transcription antitermination protein NusB n=2 Tax=Anaerococcus RepID=C2CFC5_9FIRM Length = 133 Score = 93.9 bits (233), Expect = 2e-18, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 59/136 (43%), Gaps = 8/136 (5%) Query: 4 AARRRARECAVQALYSWQLSQ-NDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 R RE + +Y +S+ D+ + + + D + + ++ + Sbjct: 1 MNRVEQREWVFKLIYQDMISKIEDVDKILAE------LNLADEDFIKASISSYLDKLTLI 54 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + + L + + +V +++L +++ E+ D+P V+INEA+ LAK + E+ +K Sbjct: 55 EEKVDSNLDSKHKRIAKVLRSILYLSINEIYFM-DIPVSVSINEAVNLAKKYSDEEDYKL 113 Query: 123 VNGVLDKAAPVIRPNK 138 VN +L K Sbjct: 114 VNSILGSIVRKDGNEK 129 >UniRef50_B9GFY0 Predicted protein n=6 Tax=Spermatophyta RepID=B9GFY0_POPTR Length = 527 Score = 93.9 bits (233), Expect = 2e-18, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 3/99 (3%) Query: 35 LAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLS--RLLEELGQVEKAVLRIALYEL 92 +D+ D D+ +++ G YLD L+ + + + +LRI YE+ Sbjct: 103 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDYLIGSLCHDEKAFRSMEPLLLQILRIGFYEI 162 Query: 93 SKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAA 131 K D+P ++E + LAK + VNG+L K Sbjct: 163 VKL-DMPSYAVVDENVRLAKVSLRPGAGNMVNGILRKLV 200 >UniRef50_Q04EK8 Transcription termination factor n=2 Tax=Oenococcus oeni RepID=Q04EK8_OENOB Length = 130 Score = 93.5 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 45/129 (34%), Positives = 74/129 (57%), Gaps = 5/129 (3%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 +R++ RE + QA+++ +++ + + + L +Q+ D YF EL+ GV L+ Sbjct: 4 SRQQIRELSFQAIFALEINSDQDKALLKKVLFKQNTID---DYFNELVDGVFAVHKELEE 60 Query: 65 LMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 KPYL LE + + ++I L+EL+ R D+P KV++++A ELAK+FG E KF Sbjct: 61 KYKPYLKDNWSLERISKTADIAMQIGLFELTSRIDIPKKVSLDQATELAKNFGDESDGKF 120 Query: 123 VNGVLDKAA 131 VNGVL Sbjct: 121 VNGVLAHFV 129 >UniRef50_A9BJY1 NusB antitermination factor n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BJY1_PETMO Length = 151 Score = 93.5 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 68/132 (51%), Gaps = 4/132 (3%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLY---FRELLAGVATNTAY 61 +R R+ ++L+ + + ++ + F + ++ Y ++ + + N Sbjct: 14 KKRMMRKLIFESLFQLSIKDVKLDNILFTFEKLNEQAHLEESYYLEAKQYIEDIYKNKNE 73 Query: 62 LDGLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 D L+ Y +E +G +EK V+RI +YEL + D+P KV +NE+ EL K++ + + Sbjct: 74 YDALINKYSEGWRVERIGNIEKTVMRIFIYELINKKDIPVKVILNESTELTKTYATQKAA 133 Query: 121 KFVNGVLDKAAP 132 FVNG++DK A Sbjct: 134 AFVNGIMDKIAR 145 >UniRef50_A0LDW0 Sun protein n=2 Tax=cellular organisms RepID=A0LDW0_MAGSM Length = 452 Score = 93.5 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 3/122 (2%) Query: 10 RECAVQALYSWQLSQNDIADVEYQ-FLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 R A A+ + + Q + E++ G + A L+ + Sbjct: 9 RTMAAAAVSAMLSEHLPLETALEQQIHQQSGTSPEMRGRAHEIVVGTIRHMALLEATLTR 68 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF-GAEDSHKFVNGVL 127 ++ + L+ +AVL ALY+ P A++EA++L K + FVN VL Sbjct: 69 FMQKDLKAKHHYVRAVLLTALYQAQFM-RTPIHSAVDEAVKLVKQQPRDHNLSGFVNAVL 127 Query: 128 DK 129 + Sbjct: 128 RR 129 >UniRef50_Q0F395 Sun protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F395_9PROT Length = 404 Score = 93.5 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 47/131 (35%), Gaps = 7/131 (5%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 + R+ A+++L + Q ++ + EL+ GV L+ Sbjct: 2 QVRKAAIESLADILVRQRKAEQAMERY--GVRLDARGRGLLHELVYGVLRRFYSLEADYS 59 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 + ++ + L I Y+L VP A++E + A + FVN VL Sbjct: 60 RFCRSKPDDTA---RMALLIGTYQLRYM-RVPAHAALSETV-AAVMQSNPKAGGFVNAVL 114 Query: 128 DKAAPVIRPNK 138 + + P K Sbjct: 115 RRVSEHEPPQK 125 >UniRef50_B6FZ39 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6FZ39_9CLOT Length = 173 Score = 93.5 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 1/114 (0%) Query: 23 SQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVE 81 + +D+ + +++ Y + +D + Y + + +V+ Sbjct: 60 NDSDVHESMETEEEIDLENYLNLDYVSNVCKIYEEKHEEIDEAIDKYAKGWSIMTMPKVD 119 Query: 82 KAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIR 135 A+LR+A+ E+ +P KV+INEAIE+AK + + S KF+NGVL + Sbjct: 120 VAILRLAIAEIGFIDSIPEKVSINEAIEMAKMYCDDKSPKFINGVLGSYLNDRK 173 >UniRef50_C5X355 Putative uncharacterized protein Sb02g027560 n=1 Tax=Sorghum bicolor RepID=C5X355_SORBI Length = 574 Score = 93.5 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 54/140 (38%), Gaps = 19/140 (13%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQD----------------VKDVDVLYFRELLA 53 R AV L + + + + + + + D D+ ++A Sbjct: 109 RAVAVVRLLRIEKGKAFVDLLNEKANDSGEKEIGYVERTLGFSTRYLDDRDIRLVTVIVA 168 Query: 54 GVATNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELA 111 G YLD L+ ++ E+ + +LRI +E+ K DVP A++E ++LA Sbjct: 169 GTVRWKRYLDYLIMSLCSEEKVFREMEPLLLQILRIGFFEILKL-DVPAYAAVDENVKLA 227 Query: 112 KSFGAEDSHKFVNGVLDKAA 131 K + VN +L K Sbjct: 228 KVALRPGAGNMVNAILRKLV 247 >UniRef50_A5CEP9 N utilization substance protein B n=2 Tax=Orientia tsutsugamushi RepID=A5CEP9_ORITB Length = 162 Score = 93.1 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 36/155 (23%), Positives = 64/155 (41%), Gaps = 19/155 (12%) Query: 2 KPAARRRARECAVQALY--SWQLSQNDIADVEYQF---------LAEQDVKDVDV----- 45 K + R ++Q +Y S+ I + L + ++ Sbjct: 7 KINTKTITRIASIQGVYSYQILDSEPTIDSIIDFIITYYKDKSSLEDLELDSAIPCFKLR 66 Query: 46 -LYFRELLAGVATNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKV 102 Y +L+ N +D ++ YL + +++L + ++LR+A EL + PYKV Sbjct: 67 TNYLTKLVNETIDNLETIDMIISSYLADNWQIKDLHLILLSILRVATCELKFFTSTPYKV 126 Query: 103 AINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPN 137 INE +A F E FVN +L+K + +R N Sbjct: 127 VINEFTNIASDFVKESEIGFVNSLLEKISFNVRTN 161 >UniRef50_C2MAV6 NusB family protein n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2MAV6_9PORP Length = 347 Score = 93.1 bits (231), Expect = 3e-18, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 52/129 (40%), Gaps = 5/129 (3%) Query: 12 CAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLS 71 A++ L L D D LY +LL+ + D ++ P L Sbjct: 220 FALKTLR----RGAKDGLELPGDLLPMFHSDRDRLYAHQLLSETLLHREEYDAMLTPRLD 275 Query: 72 RL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 + + V+ ++ +A+ E D+ V INE IELAK + S F+N VLD+ Sbjct: 276 NWEQDRVALVDMILMEMAVAEALSCPDIALVVTINEYIELAKVYDNAKSASFINAVLDRL 335 Query: 131 APVIRPNKK 139 ++ K Sbjct: 336 FTDLKGEGK 344 >UniRef50_C2KPZ2 Possible transcription antitermination protein NusB n=2 Tax=Mobiluncus mulieris RepID=C2KPZ2_9ACTO Length = 182 Score = 92.8 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 14 VQALYSWQLSQNDIADVEYQFLAEQDVKDVDV----LYFRELLAGVATNTAYLDGLMKPY 69 + LY L D + Y ++ + Y RE+L GVA + +D + Y Sbjct: 1 MDVLYEAHLKDLDDSAGIYSLAKLRETETTAQTPMPPYAREILEGVAEHLDRIDAALATY 60 Query: 70 LS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 L + +V+ A++R+A +E+ DV VAI A++LA ++S KF+NG+L Sbjct: 61 SRAWSLHRMPEVDLAIMRVATWEILFNPDVDGPVAITAAMQLAAERSTDESPKFINGLLG 120 Query: 129 KA 130 Sbjct: 121 TI 122 >UniRef50_Q2G467 N utilization substance protein B homolog n=7 Tax=Sphingomonadales RepID=NUSB_NOVAD Length = 148 Score = 92.8 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 10/128 (7%) Query: 18 YSWQLSQNDIADVEYQF--------LAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 Y + Q + + +F + + + DV +F +++ GV +DGL+ Sbjct: 21 YQADMEQTPLHLLLDEFHQHRLGAEIEDVEYAKADVAFFDDVVKGVDARRDEIDGLLSAR 80 Query: 70 LS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 L+ L L + +LR YEL R DV I E +++A +F E KFVNG+L Sbjct: 81 LAKGWALPRLDRTMLQILRAGAYELMARRDVNVGTVITEYVDVAHAFFEEREAKFVNGLL 140 Query: 128 DKAAPVIR 135 D A +R Sbjct: 141 DAVAKDVR 148 >UniRef50_B3E3P1 Sun protein n=4 Tax=Desulfuromonadales RepID=B3E3P1_GEOLS Length = 464 Score = 92.8 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 50/127 (39%), Gaps = 1/127 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R+ A L S D+ Q L+ ++ D F EL+ GV LD +K Sbjct: 19 RQAAYTTLQRLSGSDLHADDLIDQELSRNQLQGPDRGLFAELVFGVLRRQGTLDHYLKQL 78 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 + + LE L +LR+ LY+L VP A++ +EL + +NGVL Sbjct: 79 VQQPLERLELPVLLLLRLGLYQLRYLDRVPSHAAVHATVELTNEIL-PRAKGLINGVLRS 137 Query: 130 AAPVIRP 136 Sbjct: 138 YLRRQES 144 >UniRef50_B2UP28 Sun protein n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UP28_AKKM8 Length = 412 Score = 92.8 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 26/143 (18%), Positives = 52/143 (36%), Gaps = 13/143 (9%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK R+ A+ L SW ++ + + + + D + L+ V N Sbjct: 1 MKNNPPSP-RQTALNCLRSWHAGRSFAETLVDRECSRTALPSADRHLVQALVFSVLRNQT 59 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +LD ++ L+ + +L++ L +L + A+ E + LA + Sbjct: 60 WLDHVIGTLRKGRLDVEA---RLILQLGLSQL-FLLGMADHAAVYETVNLA----SVRLR 111 Query: 121 KFVNGVLDKAAPV----IRPNKK 139 VN +L A + +K Sbjct: 112 GLVNAILRNALRREKTILEEREK 134 >UniRef50_C0BGT7 Transcription antitermination factor NusB n=1 Tax=Flavobacteria bacterium MS024-2A RepID=C0BGT7_9BACT Length = 314 Score = 92.8 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 1/119 (0%) Query: 22 LSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL-DGLMKPYLSRLLEELGQV 80 L D+ + D + +LL V N + L + L+ + E + Q+ Sbjct: 187 LKHIDVNSSQTLTFPRPSENKEDTDFGIQLLEKVIANDSKLQEELLGKTPNWDAERIAQL 246 Query: 81 EKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 + +L++A+ EL +P KV +NE +E+AK + S+ FVNGVLDK + Sbjct: 247 DNVILKVAIAELLYFPMIPSKVTLNEYLEIAKDYSTPKSNNFVNGVLDKLVKEFDHENR 305 >UniRef50_C5PR17 N utilization substance protein n=2 Tax=Sphingobacterium spiritivorum RepID=C5PR17_9SPHI Length = 307 Score = 92.8 bits (230), Expect = 4e-18, Method: Composition-based stats. Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 2/129 (1%) Query: 13 AVQALYSWQLSQNDIADVEYQFLAEQDVK-DVDVLYFRELLAGVATNTAYLDGLMKPYLS 71 +QAL + + LAE D + +LLA L+ Sbjct: 169 VLQALIAKTFKNFSSEIPQQNKLAELTQNWLDDREFVLDLLANTIRYGEEYQSLIAAKTK 228 Query: 72 RL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 + + ++ ++R+A+ EL S +P KV INE IEL+K F S+ F+NG+LDK Sbjct: 229 NWEADRIALLDTILMRMAICELINFSSIPVKVTINEYIELSKVFSTLKSNTFINGILDKI 288 Query: 131 APVIRPNKK 139 + + Sbjct: 289 LADLNQQGR 297 >UniRef50_Q0AKI8 Fmu (Sun) domain protein n=1 Tax=Maricaulis maris MCS10 RepID=Q0AKI8_MARMM Length = 433 Score = 92.4 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 39/122 (31%), Gaps = 2/122 (1%) Query: 19 SWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELG 78 + + + + D D + R + A ++ LSR L E Sbjct: 17 AVMKQRRTLEAALEHTPEFAAMSDRDRAFARAITATTFRRLGQTRTVLNGLLSRPLHETS 76 Query: 79 QVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA-EDSHKFVNGVLDKAAPVIRPN 137 + +A+L +L P ++ +ELA + +N VL + R Sbjct: 77 EGAQALLITGATQLLWMDGAP-HAVVSSTVELADARSDARKLKGLINAVLRRVDREGRER 135 Query: 138 KK 139 K Sbjct: 136 LK 137 >UniRef50_C2HH21 Possible rRNA SAM-dependent methyltransferase RmsB n=2 Tax=Finegoldia magna RepID=C2HH21_PEPMA Length = 423 Score = 92.4 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 46/113 (40%), Gaps = 4/113 (3%) Query: 26 DIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVL 85 +++ + D+ D+ Y + + N ++D ++ L +L ++ +L Sbjct: 20 YSSELLKTY-DYGDLDKRDIAYIKRCVFTEIENRFFIDYVISKCSDLELNKLDKIVLEIL 78 Query: 86 RIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 R+A E+ ++EA+ELA + +VN VL + + + Sbjct: 79 RMATTEILFM-KTADYAVVDEAVELANNLTHYKD--YVNAVLREVCRINLDEE 128 >UniRef50_A1WZH2 Sun protein n=1 Tax=Halorhodospira halophila SL1 RepID=A1WZH2_HALHL Length = 429 Score = 92.0 bits (228), Expect = 5e-18, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 43/128 (33%), Gaps = 3/128 (2%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R AV L + + + V + + + L+ G L+ + Sbjct: 6 RVAAVHVLERVLERGETLDEALEAQFSR--VSERNRSLLQALVYGALRWLTRLEAQVATL 63 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 R + + +L I +E + P A++EA++ A+ + VN VL K Sbjct: 64 TPRDDWRADPLLRGLLVIGAWEAQGLA-TPAHAAVSEAVDAARRLRRARAAGMVNAVLRK 122 Query: 130 AAPVIRPN 137 P Sbjct: 123 LHKATPPG 130 >UniRef50_C3J8Y9 NusB family protein n=2 Tax=Bacteria RepID=C3J8Y9_9PORP Length = 348 Score = 92.0 bits (228), Expect = 5e-18, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 1/119 (0%) Query: 22 LSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQV 80 + + + + + D ELL + ++ L ++ + V Sbjct: 226 MRKAKPDTSFDEVIIPAYKDEEDTHLAAELLRTTIVHEEEYREIINKNLRNWDMDRVTDV 285 Query: 81 EKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 + +L++AL EL +P V +NE IELAK + +S FVNG+LD A +R ++ Sbjct: 286 DMIILQMALAELLSFPTIPTTVTLNEYIELAKIYSTAESGVFVNGLLDSALHQLRNERR 344 >UniRef50_B9QVY4 Ribosomal RNA small subunit methyltransferase B n=2 Tax=Alphaproteobacteria RepID=B9QVY4_9RHOB Length = 468 Score = 92.0 bits (228), Expect = 5e-18, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 45/133 (33%), Gaps = 5/133 (3%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQD---VKDVDVLYFRELLAGVATNTAYLDGL 65 AR+ A L + + + + D R + + + + Sbjct: 37 ARKVAADILGNVVHKKRPLDGELDMASGHSGFRALAANDRALVRAIAGAALRHRGEITEI 96 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAK-SFGAEDSHKFVN 124 + L R + E +L +A+ ++ D+P + A++ A++ A A VN Sbjct: 97 LGRLLDRDIPEKTGRVLDILHVAIAQMQFL-DIPDRAAVSLAVDHASMDRRARPYKGLVN 155 Query: 125 GVLDKAAPVIRPN 137 GVL + Sbjct: 156 GVLRRLGRERDEI 168 >UniRef50_C0XST3 Transcription antitermination protein NusB n=1 Tax=Corynebacterium lipophiloflavum DSM 44291 RepID=C0XST3_9CORY Length = 188 Score = 91.6 bits (227), Expect = 6e-18, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 55/131 (41%), Gaps = 6/131 (4%) Query: 14 VQALYSWQLSQNDIADVEYQFLAEQDVKD----VDVLYFRELLAGVATNTAYLDGLMKPY 69 V L+ + D V + Y RE++ GVA +D ++ + Sbjct: 18 VDILFEAETRDIDPVAVVEDRIELAQDPQNAVAPIAEYTREIITGVAEKLDDIDDAVEQF 77 Query: 70 L--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 L L L V++ +LR+A +E+ DV +AI+ A+ +A+ + + +++ VL Sbjct: 78 LSQDWELGRLPAVDRQILRVAAWEILFNDDVAAPIAISNALGMAEEYAGHAAPPYIHAVL 137 Query: 128 DKAAPVIRPNK 138 D + + Sbjct: 138 DDVVKTLPVPE 148 >UniRef50_C3RL93 Predicted protein n=4 Tax=Bacteria RepID=C3RL93_9MOLU Length = 134 Score = 91.6 bits (227), Expect = 6e-18, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 68/134 (50%), Gaps = 5/134 (3%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKD--VDVLYFRELLAGVATN 58 MK ++ RE AV A Y L + ++ +++D+ D Y + +A+N Sbjct: 1 MKKYRKKIIREKAVIATYQKLLVDTNEDEIREYLNSDKDLSSNQDDFDYCFMFIISIASN 60 Query: 59 TAYLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 + YL L+ L ++E A+L + YEL ++ +V INEA+EL+K + Sbjct: 61 IERYKAEVAKYLKPGWTLDRLSKMELAILLVGCYELL-ETEQSKEVIINEAVELSKKYCD 119 Query: 117 EDSHKFVNGVLDKA 130 D++KF+NG+L++ Sbjct: 120 SDAYKFINGLLNRI 133 >UniRef50_B4U865 NusB antitermination factor n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U865_HYDS0 Length = 139 Score = 91.6 bits (227), Expect = 7e-18, Method: Composition-based stats. Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 3/132 (2%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQF--LAEQDVKDVDVLYFRELLAGVATNTAYLD 63 R RARE A ++LY+W +S +I+ + + +++ +K Y + N +D Sbjct: 5 RARAREIAFRSLYAWDISGGEISIISQEIINMSKPPLKKDSQKYTLLITKKFGENIENID 64 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + YL L++LG +EKA+LR A EL AI + IE+A ++G + + F Sbjct: 65 KKIASYLENWNLDDLGSIEKAILRTAFTELLYIKPKKNIQAIIDYIEIASNYGNKKTPSF 124 Query: 123 VNGVLDKAAPVI 134 +NG+L K + I Sbjct: 125 INGILSKLSKDI 136 >UniRef50_B1A1G7 Putative N utilization substance protein (Fragment) n=1 Tax=Flammeovirga yaeyamensis RepID=B1A1G7_9SPHI Length = 200 Score = 91.2 bits (226), Expect = 9e-18, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 1/99 (1%) Query: 42 DVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPY 100 D D +F +L ++ + ++ + +V+ ++ +AL E+ ++P Sbjct: 90 DEDKEFFEDLYKYTLEQEESFKEIIAKKSKKWAIDRIAKVDSILINMALAEMLNFRNIPV 149 Query: 101 KVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 KV INE IE++K + S +F+NG+LD + + K Sbjct: 150 KVTINEFIEISKQYSTPKSWQFINGMLDSISEELEAEGK 188 >UniRef50_C7N543 tRNA/rRNA cytosine-C5-methylase n=2 Tax=Slackia RepID=C7N543_SLAHD Length = 531 Score = 91.2 bits (226), Expect = 9e-18, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 50/125 (40%), Gaps = 4/125 (3%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAE-QDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 AR A + + +++V ++ +K DV + L GV + LD + Sbjct: 96 ARIAACLSCRIVRERDAFVSEVVPGVVSRMGPMKPEDVAFATRLARGVVATSGALDDFIN 155 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 L + + + LR++ YEL VA+++ +EL ++ + N VL Sbjct: 156 RNLYSPAD-IQPNVRDALRVSAYELLYLKK-DDYVAVDQGVELV-AYVEPKARALANAVL 212 Query: 128 DKAAP 132 K A Sbjct: 213 RKMAR 217 >UniRef50_Q88RR3 Ribosomal RNA small subunit methyltransferase B n=10 Tax=Gammaproteobacteria RepID=RSMB_PSEPK Length = 436 Score = 91.2 bits (226), Expect = 9e-18, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 41/117 (35%), Gaps = 3/117 (2%) Query: 20 WQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQ 79 + + L V + D ++L G A LD L L + + Sbjct: 14 VLSGKASLNSSLPAQLD--KVDERDRGLTQDLAFGTARWQPRLDLLAAQLLQKPFKAADA 71 Query: 80 VEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRP 136 +A+L + LY+L + +P AI E + A + +N VL +A Sbjct: 72 DVQALLLVGLYQLFY-TRIPAHAAIGETVGCADKLKKPWAKGLLNAVLRRAQREGEE 127 >UniRef50_A3HY11 Putative N utilization substance protein n=1 Tax=Algoriphagus sp. PR1 RepID=A3HY11_9SPHI Length = 394 Score = 91.2 bits (226), Expect = 1e-17, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 62/137 (45%), Gaps = 6/137 (4%) Query: 5 ARRRARECAVQALY-SWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 + R A + L + Q+ ++ + + + D +F+ + N A Sbjct: 250 NKSVVRSLASKILKNAAQVDGSETNPLPEIAMNW----EEDKEFFQNIFNFTLENEAESK 305 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 L+ ++ L +K ++ +AL E+ +P KV+INE I+++K++ S +F Sbjct: 306 ALISQKTKNWDIDRLAFTDKIIISMALAEMKNFPSIPVKVSINEYIDISKTYSTPKSKQF 365 Query: 123 VNGVLDKAAPVIRPNKK 139 VNG+LD + + + + Sbjct: 366 VNGLLDVMSKELTESGQ 382 >UniRef50_B3PGY5 Ribosomal RNA small subunit methyltransferase B n=2 Tax=Gammaproteobacteria RepID=B3PGY5_CELJU Length = 432 Score = 90.8 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 49/131 (37%), Gaps = 3/131 (2%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 R A Q L Q ++ + + + D ++L GV L Sbjct: 4 VRAAATQVLAQILRQQGSLSSLLPAM--SVKIAEQDRPLLQQLCFGVCRYYPQLQAYTSL 61 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 L + L +A+L + LY+L + +P AI E +E+ + + K VNGVL Sbjct: 62 LLDKPLRAKDSDVQALLLLGLYQLIH-TRIPDHAAIGETVEVTRDIKKAWATKLVNGVLR 120 Query: 129 KAAPVIRPNKK 139 + + + Sbjct: 121 QFQRDQQTLGE 131 >UniRef50_A8YVX2 Transcription termination n=9 Tax=Lactobacillus RepID=A8YVX2_LACH4 Length = 130 Score = 90.8 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 35/131 (26%), Positives = 62/131 (47%), Gaps = 4/131 (3%) Query: 4 AARRRARECAVQALY-SWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 + +R+ A+QA+Y + Q DVE + +A ++ Y ++L+ GV N L Sbjct: 1 MNQHESRKVAMQAVYLANQEPDLSAEDVEAKVVATLNL-KQLSAYSKKLIEGVLENREDL 59 Query: 63 DGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 + +L LE + Q+ A++ +AL+E+ + K A+NEA+ L F Sbjct: 60 QSELTNHLKKSWRLERVSQIVVAIMEVALFEIKNSDKIDPKAAVNEALNLCDEFAEPKEK 119 Query: 121 KFVNGVLDKAA 131 F+NG+L Sbjct: 120 PFINGMLANFV 130 >UniRef50_B9JUI9 Sun protein n=44 Tax=Rhizobiales RepID=B9JUI9_AGRVS Length = 493 Score = 90.8 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 48/133 (36%), Gaps = 5/133 (3%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFL---AEQDVKDVDVLYFRELLAGVATNTAYLDG 64 AR A + L + + + + A + + D R +L ++ Sbjct: 53 EARMAASRLLAAVIDRKTSLDGMMDGDHGNPAYAALSEADRGLVRAILNTSLRFLPRIEA 112 Query: 65 LMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELA-KSFGAEDSHKFV 123 ++ L L + + L +A ++ DVP A++ A+E A + + K V Sbjct: 113 MLARLLDAPLPDGARALYHSLIVAAAQMVYL-DVPDHSAVDLAVEQANRDPRSRRFAKLV 171 Query: 124 NGVLDKAAPVIRP 136 N VL + + Sbjct: 172 NAVLRRLGREKQA 184 >UniRef50_Q87AR1 Ribosomal RNA small subunit methyltransferase B n=20 Tax=Gammaproteobacteria RepID=RSMB_XYLFT Length = 431 Score = 90.8 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 39/124 (31%), Gaps = 2/124 (1%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R A + L + L + D + V + + + Sbjct: 8 RVVAARVLALVVDQGRSLKTELAAALPTLE-DVRDRALVEAICFAVLRRRPVYEAALTRW 66 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 L+R L + +L + +L VP A++ ++ + G FVN VL + Sbjct: 67 LARPLGRGDAQLRGLLMVGFAQLDVL-KVPPYAALSATVDACRVLGWPHRVSFVNAVLRR 125 Query: 130 AAPV 133 A Sbjct: 126 AQRE 129 >UniRef50_Q7NKZ0 N utilization substance protein B homolog n=1 Tax=Gloeobacter violaceus RepID=NUSB_GLOVI Length = 211 Score = 90.8 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 64/119 (53%), Gaps = 2/119 (1%) Query: 22 LSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQV 80 +++ + +F+ D + Y ELL LD L+ + +E L ++ Sbjct: 91 INRVGASLELPEFVRLAD-ELQVRAYAFELLGAFVREGDNLDKLLDTCMEGWQVERLTRI 149 Query: 81 EKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 ++ +LR+AL E+ + VP++VAI+EA+ELAK + + + +F+NGVL + ++ ++ Sbjct: 150 DRDILRLALVEMVELKSVPFRVAIDEAVELAKKYSTDTAVRFINGVLRRVVQHLQLEQR 208 >UniRef50_D1RHX8 Ribosomal RNA small subunit methyltransferase B n=1 Tax=Legionella longbeachae D-4968 RepID=D1RHX8_LEGLO Length = 458 Score = 90.4 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 18/130 (13%), Positives = 39/130 (30%), Gaps = 10/130 (7%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 R A+ L + + ++ + + E+ G + L + Sbjct: 34 NERLHALYILTHLLVEKTPLSQLMASSAEVSPMTK-------EICFGFCRHYFRLQAIAN 86 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 + + +E+ L I +Y+L +P + E + L + + VN VL Sbjct: 87 CLIHKKPKEIELWV--ALLIGIYQLHYM-KLPDYAVVKETVALLEKIKKGWAKGLVNAVL 143 Query: 128 DKAAPVIRPN 137 Sbjct: 144 RNFCRQHDEI 153 >UniRef50_C9Q172 N utilization substance protein NusB n=9 Tax=Prevotella RepID=C9Q172_9BACT Length = 372 Score = 90.4 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 53/129 (41%), Gaps = 6/129 (4%) Query: 12 CAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLS 71 ++ + + + ++ ++ + D + R+L N M Sbjct: 180 FVLKTIKRFDPANKAKQELLPEYK-----DEEDKDFARKLFRSTILNADQYQRYMSENSR 234 Query: 72 RL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 L ++ +++IA+ E+ ++P V INE +ELAK + S ++NG+LD Sbjct: 235 NWDFSRLAYMDVVIMQIAIAEMLTFPNIPVSVTINEYVELAKLYSTHRSGGYINGMLDTI 294 Query: 131 APVIRPNKK 139 A + + + Sbjct: 295 ARGLIAHGQ 303 >UniRef50_C7NCF2 NusB antitermination factor n=4 Tax=Fusobacteriaceae RepID=C7NCF2_LEPBD Length = 138 Score = 90.4 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 71/136 (52%), Gaps = 3/136 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVD-VLYFRELLAGVATNTAYL 62 RR RE + L+ +L N+I + E+++K D + + R + + N L Sbjct: 1 MTRREIREEIFKLLFEHELIDNNIEKRINDVINEENLKKNDEIDFLRSYVTEIIENENIL 60 Query: 63 DGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 +K L E LG +EK +L+I+ YE++ ++ Y++AINE +E+AK + D+ + Sbjct: 61 IEKIKNILDGWTYERLGTIEKVLLKISFYEIT-IKNIGYEIAINEVLEIAKKYSYNDTKE 119 Query: 122 FVNGVLDKAAPVIRPN 137 F+NG+L K I+ Sbjct: 120 FLNGILAKLVKDIKEE 135 >UniRef50_C8PZ41 Ribosomal RNA small subunit methyltransferase B n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PZ41_9GAMM Length = 450 Score = 90.1 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 41/132 (31%), Gaps = 6/132 (4%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 R V L Q ++ V + D + ELL G L + + Sbjct: 9 NTRAKVVATLERIQQGES---LSSLLDPLLNQVSEKDKGFAHELLLGTLRQWWALARIGE 65 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 + E + A L I LY+L D P AI E +E K +N +L Sbjct: 66 SLIEH--EVTDKGVWAALNIGLYQLLYM-DTPDYAAIGETVEAVKQLDKGYGAGLINAIL 122 Query: 128 DKAAPVIRPNKK 139 K K Sbjct: 123 RKVQKNPAKFAK 134 >UniRef50_A6EGS9 Putative N utilization substance protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6EGS9_9SPHI Length = 297 Score = 90.1 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 1/95 (1%) Query: 42 DVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPY 100 + D + +L A L+ E + ++ ++++A+ EL +P Sbjct: 188 EEDRKFVEDLFAYTLRKDKEYQELIADRTKNWESERIALMDTILMKMAICELMNFPSIPV 247 Query: 101 KVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIR 135 KV INE ++L+K + S+ F+NG+LDK ++ Sbjct: 248 KVTINEYLDLSKDYSTPKSNSFINGILDKILGDLK 282 >UniRef50_A9IZD6 SUN-family protein n=5 Tax=Bartonella RepID=A9IZD6_BART1 Length = 454 Score = 90.1 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 51/137 (37%), Gaps = 9/137 (6%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQD---VKDVDVLYFRELLAGVATNTAYLDGL 65 R+ V+ L + ++ + + D L R +L + + Sbjct: 19 VRQVCVRLLGAVVDRYTPLSGLTDNEHGHPQYLKLSQRDRLLCRAILTTSLRHRGQITAA 78 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF--- 122 + +L R L + +L I++ ++ D+P AI+ A+ +AK +F Sbjct: 79 LSCFLERPLPSQALSLQHLLHISVAQILYL-DIPDHAAIDLAVRVAK--FDPRMRRFSGV 135 Query: 123 VNGVLDKAAPVIRPNKK 139 VN +L A P ++ Sbjct: 136 VNALLRNVAREAAPLRQ 152 >UniRef50_B9Y7F7 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y7F7_9FIRM Length = 412 Score = 90.1 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 11/129 (8%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R+ A Q L + Q Q + + + + ++ GV + L + Sbjct: 5 RKRAWQGLNAILNEGQYANLWLRQH--GQTLSEEEKRWVTAVIYGVLRHREPLRWQWRDL 62 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK-FVNGVLD 128 + + E +L +++Y+L +N+A+EL S K VN VL Sbjct: 63 VRNVPE---PSVAVLLDMSVYQLFYLDKGAEYAIVNDAVELC-----PRSKKGLVNAVLR 114 Query: 129 KAAPVIRPN 137 + Sbjct: 115 QLLRRGPKP 123 >UniRef50_D0J9N1 Antitermination protein NusB n=2 Tax=Blattabacterium RepID=D0J9N1_BLASP Length = 312 Score = 90.1 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 1/100 (1%) Query: 41 KDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVP 99 D + + L + + L+ + +E + ++ +L++A+ E ++P Sbjct: 204 NDENKKFIVSLYRNTIFHKREFNELISNISNNWNIERIAIIDLIILQMAICEFLYFPNIP 263 Query: 100 YKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 K +NE IE+AK F + S F+NG+LD+ ++ N K Sbjct: 264 PKATMNEYIEIAKIFCMDKSKTFINGILDQVFKLLHKNNK 303 >UniRef50_Q2VBT2 NusB n=1 Tax=uncultured Bacteroidetes bacterium 'SBI2-18 P41A3' RepID=Q2VBT2_9BACT Length = 325 Score = 89.7 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 1/100 (1%) Query: 41 KDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLL-EELGQVEKAVLRIALYELSKRSDVP 99 D D + EL+ V N L + E + Q++ +L++ L E +P Sbjct: 205 NDEDAEFGIELIKYVIENKEMLQDEISKVTPNWDNERIAQIDLILLQMCLSEFLFFKSIP 264 Query: 100 YKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 KV+INE +E+AK + ++ S+ F+NG++D + + Sbjct: 265 LKVSINEYLEIAKEYSSDKSNIFINGIMDSLSKQFENEGR 304 >UniRef50_A0M4D8 Antitermination protein NusB n=8 Tax=Bacteroidetes RepID=A0M4D8_GRAFK Length = 337 Score = 89.7 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 1/100 (1%) Query: 41 KDVDVLYFRELLAGVATNTAYL-DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVP 99 + D + +L N L + ++ + + + +V+ ++++A+ E K + +P Sbjct: 229 NEEDKEFAIKLFRKTYLNDEDLSEEMLGKTPNWDKDRIAEVDMVLIKMAICEFLKFTSIP 288 Query: 100 YKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 KV INE +E+AK + S F+NGVLDK + + K Sbjct: 289 VKVTINEYLEIAKEYSTPKSSIFINGVLDKLSKEYQTEDK 328 >UniRef50_C1A8F7 Antitermination protein NusB n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A8F7_GEMAT Length = 157 Score = 89.7 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 46/130 (35%), Positives = 69/130 (53%), Gaps = 3/130 (2%) Query: 7 RRARECAVQALYSWQLSQND-IADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R R A+QALY+ L + + + + + L+ L+A VA A LD Sbjct: 26 TRGRARALQALYAADLRDLTQVKRIATTVFDDLAIDPAERLFASRLIATVADRGAVLDAA 85 Query: 66 MKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + + LE LG +E++VLR+A EL+ R + P KV + EA+ LA+ +G E S +FVN Sbjct: 86 LVEVTANWRLERLGAIERSVLRLAAAELA-REETPVKVVLQEAVHLAERYGTERSARFVN 144 Query: 125 GVLDKAAPVI 134 GVLD A + Sbjct: 145 GVLDAYARRL 154 >UniRef50_C8W755 NusB/RsmB/TIM44 n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8W755_ATOPD Length = 463 Score = 89.7 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 3/131 (2%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR+ A QA + + + + D + ++ D + L G LD +K Sbjct: 7 ARKVAYQAFFECRRNNLCVRDYLRESKDFSELSAQDKAFATRLALGATLTKGKLDEALKN 66 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 +L + L + RIA++E+ + AI++ +EL KS + S N VL Sbjct: 67 HLKSGI-HLEPKVQDAFRIAVFEVLYL-ETRRDAAISQGVELVKSVS-KRSSGLANAVLR 123 Query: 129 KAAPVIRPNKK 139 K + + Sbjct: 124 KISEHEANLAR 134 >UniRef50_Q8RII1 N utilization substance protein B homolog n=7 Tax=Fusobacterium RepID=NUSB_FUSNN Length = 153 Score = 89.3 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 35/138 (25%), Positives = 66/138 (47%), Gaps = 10/138 (7%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAEQD--------VKDVDVLYFRELLAGVATN 58 R ARE + ++ + +++ +++ F + + + + + + G+A N Sbjct: 17 RLAREEVFKLVFGVEATESASEELKQAFDIYLQNSEELIGTLNENQLEFLKSSIDGIAKN 76 Query: 59 TAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 + ++K E +G VE+A+L +A YE + P +V NE IELAK +G E Sbjct: 77 YDNIKDIIKKNTQNWAYERIGVVERALLIVATYEFIF-KNAPIEVIANEIIELAKEYGNE 135 Query: 118 DSHKFVNGVLDKAAPVIR 135 S++FVNG+L + Sbjct: 136 KSYEFVNGILANIEKSKK 153 >UniRef50_A3UKE9 RRNA methyltransferase RsmB n=1 Tax=Oceanicaulis alexandrii HTCC2633 RepID=A3UKE9_9RHOB Length = 450 Score = 89.3 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 40/128 (31%), Gaps = 2/128 (1%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R A+ A+ + + ++ D + R + + V LD + Sbjct: 27 RAVALGAVEGVLAKAVPLDGALAGRPEWKRMEPRDRAFARAIASAVIRRPIALDAALMQV 86 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIEL-AKSFGAEDSHKFVNGVLD 128 L + L + +LR E D P A++ + L A+ N VL Sbjct: 87 LDKPLPDEEVRAHLILRCGAAERLIL-DTPAHAAVDAWVSLMAQDRHTARFKNLANAVLR 145 Query: 129 KAAPVIRP 136 + + Sbjct: 146 RVVDQGKD 153 >UniRef50_D2MQI4 Putative ribosomal RNA small subunit methyltransferase B n=1 Tax=Bulleidia extructa W1219 RepID=D2MQI4_9FIRM Length = 404 Score = 89.3 bits (221), Expect = 4e-17, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 47/123 (38%), Gaps = 14/123 (11%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 + RE V+ L + Q E + + E++ G + L K Sbjct: 2 KEREAIVRILEHVLYDHAYASLSLKQLKIEGSI-----GFVTEVVYGTLRHYKLLQEQYK 56 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 P++ ++ +++ +L +ALY+ VP +N +EL K FVN VL Sbjct: 57 PFVKKIKKKMD----VLLVMALYQHHFM-KVPDYAIVNSTVELVK----SQEKGFVNAVL 107 Query: 128 DKA 130 K Sbjct: 108 RKI 110 >UniRef50_C8NU84 N utilization substance protein B family protein (Protein NusB) n=1 Tax=Corynebacterium genitalium ATCC 33030 RepID=C8NU84_9CORY Length = 217 Score = 89.3 bits (221), Expect = 4e-17, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 57/130 (43%), Gaps = 6/130 (4%) Query: 14 VQALYSWQLSQNDIADVEYQFLAEQDVK----DVDVLYFRELLAGVATNTAYLDGLMKPY 69 V L+ + D + A Y RE++AG A +D ++ + Sbjct: 18 VDILFEAETRDVDPVAIVEDRAALAGDPTNAVAPVADYTREIIAGAAAALDEIDNAIERF 77 Query: 70 L--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 L + L + V++A+LR+A +E+ +V ++I A+E++ + +++ +++ VL Sbjct: 78 LSDNWELNRIPAVDRAILRVATWEILYNDEVEPPISIANAMEMSTEYAGDNASPYIHAVL 137 Query: 128 DKAAPVIRPN 137 D N Sbjct: 138 DDIIQAHASN 147 >UniRef50_C2M6F3 NusB family protein n=1 Tax=Capnocytophaga gingivalis ATCC 33624 RepID=C2M6F3_CAPGI Length = 310 Score = 89.3 bits (221), Expect = 4e-17, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 7/129 (5%) Query: 12 CAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLA-GVATNTAYLDGLMKPYL 70 V+ L FL D + ELL V + A+ L++ Sbjct: 179 LIVKILKGLSEGG------VADFLPPLFKDKSDKDFAIELLRKAVLNDEAFHKYLVEKTP 232 Query: 71 SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 + + +++ ++++ + E K +P KV +NE +E+AK + S FVNG+LD Sbjct: 233 KWDADRIAELDAIMIKMGIAEFLKFPSIPVKVTLNEYVEIAKEYSTPKSSVFVNGILDTL 292 Query: 131 APVIRPNKK 139 + + K Sbjct: 293 SKDFQQEGK 301 >UniRef50_Q651X9 Os09g0477900 protein n=3 Tax=Magnoliophyta RepID=Q651X9_ORYSJ Length = 570 Score = 89.3 bits (221), Expect = 4e-17, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 55/146 (37%), Gaps = 19/146 (13%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQD----------------VKDVDVLYFRELLA 53 R A L + + + + + + + + + D+ ++A Sbjct: 105 RAVAAVRLLRIEKGKAFVDLLNEKGNSSGENEMSYVERTLGFSIRCLDNRDIRLVTVIVA 164 Query: 54 GVATNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELA 111 G YLD L+ ++ E+ + +LRI +E+ K +VP A++E + LA Sbjct: 165 GTVRWKRYLDYLIMSLCSEEKVFREMEPLLLQILRIGFFEILKL-NVPAYAAVDENVRLA 223 Query: 112 KSFGAEDSHKFVNGVLDKAAPVIRPN 137 K + VN +L K + N Sbjct: 224 KVALRPGAGNLVNAILRKLLLLKEAN 249 >UniRef50_C9RK88 Fmu (Sun) domain protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RK88_FIBSS Length = 419 Score = 88.9 bits (220), Expect = 4e-17, Method: Composition-based stats. Identities = 35/128 (27%), Positives = 54/128 (42%), Gaps = 17/128 (13%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 RE A + L WQ + F+ E + + EL GV YL+ +K Sbjct: 5 REEAFRVLLLWQRDGS--------FIKESGLSP----FAMELALGVCRRHLYLEYFVKSL 52 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG-AEDSHKFVNGVLD 128 + + +L + L+++ DVP AIN+++ELAKS E + + VN VL Sbjct: 53 TKK---LPSLEARVILEMGLFQMFFM-DVPDYAAINDSVELAKSANLGESTARLVNAVLR 108 Query: 129 KAAPVIRP 136 A P Sbjct: 109 TARRQGEP 116 >UniRef50_B2UNF0 NusB antitermination factor n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UNF0_AKKM8 Length = 294 Score = 88.9 bits (220), Expect = 4e-17, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 1/114 (0%) Query: 24 QNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSR-LLEELGQVEK 82 + + + + L + LD + L E + +++ Sbjct: 180 DRPSLAEIKKVVEAGRDAEELYREAKTLGEDILRRRDGLDAAIDSTLENYSPERVSAIDR 239 Query: 83 AVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRP 136 A+LR+ YEL R D+P + I+EAI L++ F + +S +F+NGVL + RP Sbjct: 240 AILRLGAYELLHRKDLPAPIVISEAIRLSERFSSAESPRFINGVLAGISKTGRP 293 >UniRef50_Q0BRA0 16S rRNA m(5)C 967 methyltransferase n=12 Tax=Acetobacteraceae RepID=Q0BRA0_GRABC Length = 452 Score = 88.9 bits (220), Expect = 5e-17, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 7/122 (5%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R+ A + L + + + ++ D L A +D +++P+ Sbjct: 36 RDAACRLLNAVLEQHRSLEEALNAL---PPMEPRDRAAAHRLAAATLRRLGTIDAVLEPF 92 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 L R + +LR+ L D P A+ A++LA+ +N VL K Sbjct: 93 LRREP---PAPVRDILRLGAAGLLFL-DTPPHAAVGTAVDLARQLRLAPFTGLINAVLRK 148 Query: 130 AA 131 A Sbjct: 149 VA 150 >UniRef50_Q9LK54 Similarity to SUN and FMU proteins n=3 Tax=Embryophyta RepID=Q9LK54_ARATH Length = 531 Score = 88.1 bits (218), Expect = 8e-17, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 3/92 (3%) Query: 48 FRELLAGVATNTAYLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAIN 105 +++ G YLD L+ R + + +LRI +YE+ KR D+P ++ Sbjct: 120 VTDVVGGTIRWRRYLDHLIGSLCHNERTFRNMEPLLLQILRIGVYEIIKR-DMPPYAVVD 178 Query: 106 EAIELAKSFGAEDSHKFVNGVLDKAAPVIRPN 137 E + LAK + FVNG+L K + + Sbjct: 179 ENVRLAKVALRPGAGDFVNGILRKLVSLKEKD 210 >UniRef50_Q0G330 Putative uncharacterized protein n=5 Tax=Rhizobiales RepID=Q0G330_9RHIZ Length = 473 Score = 87.7 bits (217), Expect = 9e-17, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 46/135 (34%), Gaps = 5/135 (3%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQ---DVKDVDVLYFRELLAGVATNTAYLDG 64 +AR+ A + L + Q + + ++ D + +L L Sbjct: 44 KARQVAAKLLGAVIEQQTSLDGLTDPDHGHPHFRQLEARDQGLVKAILLTALRFRGTLTQ 103 Query: 65 LMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKS-FGAEDSHKFV 123 + L R L +L +A ++ DVP A++ A+ A++ V Sbjct: 104 EIAARLDRPLPSNATALNHLLHVAAAQIRFL-DVPDSAAVDLAVTAAEADPRTRRFKGVV 162 Query: 124 NGVLDKAAPVIRPNK 138 N VL + + + Sbjct: 163 NAVLRRMTRELGGAE 177 >UniRef50_C9M539 Transcription antitermination factor NusB n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M539_9BACT Length = 165 Score = 87.7 bits (217), Expect = 1e-16, Method: Composition-based stats. Identities = 36/144 (25%), Positives = 57/144 (39%), Gaps = 21/144 (14%) Query: 10 RECAVQALYSWQ--------------------LSQNDIADVEYQFLAEQDVKDVDVLYFR 49 R AVQAL++ +++ + + D Sbjct: 18 RFLAVQALFALDSSADPAGTLRLLADDWELLGFHGDELEIDDETASQLPAISAEDCGAAV 77 Query: 50 ELLAGVATNTAYLDGLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAI 108 + V ++ +D L+ P L L L V++A+LR+ +E V VA +EA+ Sbjct: 78 QWAERVWSHLDQVDSLIAPCLRGWRLPRLDGVDRAILRLCFFESRVEGSVNDAVAASEAV 137 Query: 109 ELAKSFGAEDSHKFVNGVLDKAAP 132 LAK+ G E S KFVNGV+ Sbjct: 138 ILAKAMGGEQSAKFVNGVIGSIMR 161 >UniRef50_Q6MAQ2 Putative transcription termination factor, nusB n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MAQ2_PARUW Length = 154 Score = 87.4 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 1/108 (0%) Query: 32 YQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY-LSRLLEELGQVEKAVLRIALY 90 + E + +V +E + + A +D + LS + V K +LR+ ++ Sbjct: 3 DLIMNELSISKKNVRLAQEKVQKIVVQLAEIDSKISSVSLSYHFNRIQTVTKNILRLGVF 62 Query: 91 ELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 EL +D+P KV I EAI L++ F +S FVN +LD+ + + Sbjct: 63 ELFFETDIPQKVVIAEAIRLSRKFSTPESASFVNALLDQLYQKSKGEE 110 >UniRef50_C6WZZ6 Transcription termination protein NusB n=2 Tax=Flavobacteriaceae RepID=C6WZZ6_FLAB3 Length = 301 Score = 87.4 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 1/98 (1%) Query: 41 KDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVP 99 + D + R LL + + + L +E + V+K +L A+ EL P Sbjct: 204 DEDDREFARRLLKDTLNHWEESEKKLVGRLENWDIERVSLVDKIILVTAITELDYFPLTP 263 Query: 100 YKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPN 137 +V INE IE++K F + S+ F+NG+LDK N Sbjct: 264 ARVVINEYIEISKVFSTDRSNIFINGILDKYTKDFNRN 301 >UniRef50_Q2JHC7 N utilization substance protein B homolog n=3 Tax=Bacteria RepID=NUSB_SYNJB Length = 291 Score = 87.0 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 32/92 (34%), Positives = 53/92 (57%), Gaps = 1/92 (1%) Query: 41 KDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVP 99 Y +LL + T+ +D ++ L L+ +G++E+ +LR+A+ E+ + P Sbjct: 179 SQEVRAYALQLLTALRTHKEAIDARLQKALVGWQLQRVGRIERDILRLAVVEMEILASSP 238 Query: 100 YKVAINEAIELAKSFGAEDSHKFVNGVLDKAA 131 KVAINEA+ELAK +G ++ FVNGVL + Sbjct: 239 VKVAINEAVELAKKYGDPEAAAFVNGVLRRVV 270 >UniRef50_Q7MW39 NusB family protein n=2 Tax=Porphyromonas gingivalis RepID=Q7MW39_PORGI Length = 364 Score = 87.0 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 57/130 (43%), Gaps = 6/130 (4%) Query: 11 ECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL 70 E ++ + + + A + + D ++ LL N +++ L Sbjct: 237 EFVLKTIRRIEQDTDPSAILLPAYKE-----KDDAVFGTTLLRNAIINGQEYRHIIRENL 291 Query: 71 -SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 + ++ + ++ ++++A+ EL ++P V INE I+L+K F S FVNG+LD Sbjct: 292 INWEVDRIADMDMLIMQLAIAELLHFPNIPVLVTINEYIDLSKLFSTPKSGTFVNGLLDA 351 Query: 130 AAPVIRPNKK 139 +R K Sbjct: 352 VVKSLREKGK 361 >UniRef50_Q5ZSC6 rRNA methyltransferase (SUN protein) n=5 Tax=Gammaproteobacteria RepID=Q5ZSC6_LEGPH Length = 427 Score = 86.6 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 48/135 (35%), Gaps = 15/135 (11%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK R A++ L + S+ +++ ++ Q++ + +E+ G + Sbjct: 1 MKVNDRFN----ALKILTALIESRKNLS----YLMSPQEISPM----TKEICYGFCRHYF 48 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 L + +++ + VL I +Y+L + P + E + L + Sbjct: 49 RLQSIADTLINKRPK--DNELWIVLLIGIYQLQYMNK-PDYAVVKETVSLLGQVKKSWAK 105 Query: 121 KFVNGVLDKAAPVIR 135 VN VL Sbjct: 106 GLVNAVLRNFCRRKD 120 >UniRef50_Q2GKH0 N utilization substance protein B n=5 Tax=Anaplasma RepID=Q2GKH0_ANAPZ Length = 282 Score = 86.6 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 59/141 (41%), Gaps = 10/141 (7%) Query: 6 RRRARECAVQALYSWQLSQ---NDIADVEYQFLAEQ---DVKDVDVLYFRELLAGVATNT 59 + AR AVQ Y+ +D+ D+ Q D+ VD ++L + Sbjct: 19 KTSARFLAVQGAYAMMFGAYTASDLEDLLEHLCEMQEVLDLHRVDKKLLSKILGCMIEKC 78 Query: 60 AYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 +D L+ +L +E + V AV+R + EL V INE + +A + + Sbjct: 79 NEVDSLISVHLNEKWSMERINLVSLAVMRAGVCELL-CLKTSECVIINEYVGIASTVLEK 137 Query: 118 DSHKFVNGVLDKAAPVIRPNK 138 FVN +L+K A +R + Sbjct: 138 SEVNFVNAILNK-AKTVRSPE 157 >UniRef50_D2MQ58 Transcription antitermination factor NusB n=1 Tax=Bulleidia extructa W1219 RepID=D2MQ58_9FIRM Length = 124 Score = 86.6 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 5/128 (3%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +R RE AV +LY++ DI + + + D YF ++ + Sbjct: 1 MSRSVQREKAVLSLYAYLSLPRDIHSIMED--SFGSLDKAD-PYFIRVVENAQEHIQEYT 57 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + L + LG +EKA+L I E +V + I+EA+ELAK++G DS++ Sbjct: 58 NYINQVLENWTFDRLGTIEKAILLIGCAEF-SLKEVAAVIIIDEAVELAKTYGEADSYRL 116 Query: 123 VNGVLDKA 130 +N VLD Sbjct: 117 INNVLDVI 124 >UniRef50_B2VAC4 NusB antitermination factor n=2 Tax=Sulfurihydrogenibium RepID=B2VAC4_SULSY Length = 168 Score = 86.6 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 71/159 (44%), Gaps = 21/159 (13%) Query: 1 MKPAARRR----------ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRE 50 MK + AR+ +++ L+++ + D+ +V +FL + Y + Sbjct: 1 MKKKNKSLKFLRKRLLKAARDLSMRILFAYDFRKEDLFNVLEEFLNTKKFSPEIKEYVLK 60 Query: 51 LLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELS---------KRSDVPY 100 ++ N+ +D ++K +L E +G +E+AVLR+ + EL + D Sbjct: 61 VVNFYNENSQEIDDIIKSHLKNWRFERIGYIERAVLRLGVSELLIIHSKEESKELKDKEI 120 Query: 101 KVAINEAIELAKSFGAED-SHKFVNGVLDKAAPVIRPNK 138 ++ + ++L + + S KFVNG+L K + N+ Sbjct: 121 RILFLDLLDLVECYTNSKLSVKFVNGILGKINKELEQNE 159 >UniRef50_C7MCJ5 Transcription antitermination factor NusB n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MCJ5_BRAFD Length = 178 Score = 86.2 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 57/132 (43%), Gaps = 2/132 (1%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 + R R R A+ L+ + D+ DV + L + + R L+ A + Sbjct: 40 RLHGRSRERIRAIDVLFEADAKRIDVLDVLQERLRRTAAQTPLPQWSRTLVELYAPHAVD 99 Query: 62 LDGLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYK-VAINEAIELAKSFGAEDS 119 +D + + L + V++A+LR+ E+ + + I E ++A+ +DS Sbjct: 100 IDEDLATHSRDWPLHRMPAVDRAILRLGAAEVLYGEEESRRGTIIGEYTKIAEVLSTDDS 159 Query: 120 HKFVNGVLDKAA 131 +FVNG+L + Sbjct: 160 PRFVNGLLQRLV 171 >UniRef50_C1DXN6 Transcription antitermination factor NusB n=1 Tax=Sulfurihydrogenibium azorense Az-Fu1 RepID=C1DXN6_SULAA Length = 159 Score = 86.2 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 34/145 (23%), Positives = 73/145 (50%), Gaps = 11/145 (7%) Query: 1 MKPAAR---RRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVAT 57 MK + + R+ARE ++ Y++ + D+ ++ +++ + Y +E+++ Sbjct: 1 MKQSIKNIQRQARELLLKVFYTFDQKGEPLEDILKEYTNLKEISPEVINYAKEIISFFNE 60 Query: 58 NTAYLDGLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDV------PYKVAINEAIEL 110 +D ++K +L E LG +EKA+L+IA+ + K + K I + ++L Sbjct: 61 KKDKVDEMIKSHLEKWRFERLGYIEKALLKIAITDFLKLKEKGREENFMIKRIILDTLDL 120 Query: 111 AKSF-GAEDSHKFVNGVLDKAAPVI 134 + + G++ S KFVNG+L + + Sbjct: 121 VECYTGSKKSVKFVNGILGRVVREL 145 >UniRef50_A6GX17 N utilization substance protein B homolog (NusBprotein) n=7 Tax=Flavobacteriales RepID=A6GX17_FLAPJ Length = 303 Score = 86.2 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 1/100 (1%) Query: 41 KDVDVLYFRELLAGVATNTAYL-DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVP 99 D + L VA N L + + + +++ +L++A+ E K +P Sbjct: 195 DTEDKEFVGNLFRKVALNDQQLAKEFADKTPNWEADRIAEIDTIILKMAICEFLKFPSIP 254 Query: 100 YKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 KV INE +ELAK + S F+NG+LD N K Sbjct: 255 VKVTINEYLELAKEYSTPKSSIFINGILDNLVKEFESNDK 294 >UniRef50_Q5SK01 Sun protein (RNA methyltransferase) n=4 Tax=Thermus RepID=Q5SK01_THET8 Length = 398 Score = 86.2 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 45/137 (32%), Gaps = 8/137 (5%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 M+ R AV L + + L + D Y L+ G Sbjct: 1 MRAGTP---RALAVAVLLEVDRGGR-AQLLLDRALRRSPWPERDRAYATFLVYGALRRLR 56 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD L+ P L R E L + +LR+ L P ++ +E AK Sbjct: 57 LLDHLLAPLLPRP-EGLPPEVRWILRLGA--LEWLEGKPDHARVSPWVEEAKRRY-PGLA 112 Query: 121 KFVNGVLDKAAPVIRPN 137 VN VL + AP P Sbjct: 113 GLVNAVLRRLAPREAPE 129 >UniRef50_O27960 Fmu and fmv protein n=1 Tax=Archaeoglobus fulgidus RepID=O27960_ARCFU Length = 437 Score = 85.8 bits (212), Expect = 3e-16, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 45/130 (34%), Gaps = 8/130 (6%) Query: 11 ECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL 70 E A + L + S+ + + +D +K L Sbjct: 15 EIAAKVLAEVERSRISVKSAVQKL--AGGFDYKVRGSVHAYSVETLKRLNAIDYFLKSTL 72 Query: 71 SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 + + L + +LRIA+YE+ V +A + A+ +A+ G VN VL K Sbjct: 73 KK-FDGLDPFTRNLLRIAVYEMKY-KGVHPALATDSAVRIARERGK---ASLVNAVLRKV 127 Query: 131 AP-VIRPNKK 139 I+ + Sbjct: 128 EKLDIQAEGR 137 >UniRef50_Q0FEH7 Ribosomal RNA small subunit methyltransferase B, putative n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=Q0FEH7_9RHOB Length = 430 Score = 85.8 bits (212), Expect = 4e-16, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 53/128 (41%), Gaps = 6/128 (4%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQ-DVKDVDVLYFRELLAGVATNTAYLDGLMK 67 ARE AV+ L++ L + + D+ + D++ + + L N +D +++ Sbjct: 8 AREAAVRLLHAVLLERRLLIDIVNGEDSLLIDLEPSERARAQSLAMTTLRNLGPIDFVLQ 67 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF-GAEDSHKFVNGV 126 YL++ + +LR++ E+ + A++ A+ +AK N V Sbjct: 68 KYLTK---QTPFALLNILRVSAAEML-VDGIAAHAAVDSAVTMAKRRHKTAHLKDLANAV 123 Query: 127 LDKAAPVI 134 L K A Sbjct: 124 LRKVASEG 131 >UniRef50_Q9Z6S0 N utilization substance protein B homolog n=5 Tax=Chlamydophila RepID=NUSB_CHLPN Length = 160 Score = 85.8 bits (212), Expect = 4e-16, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 58/138 (42%), Gaps = 1/138 (0%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 K +++ RE +Q LY+ ++ + + +++ V VL + + Sbjct: 18 KEFPQQKMREIILQMLYALDMAPSAEDSLVPLLMSQTAVSQKHVLVALNQTKSILEKSQE 77 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD ++ L + L VEK VLR+ L+E + + I EAI L K F ++ Sbjct: 78 LDLIIGNALKNKSFDSLDLVEKNVLRLTLFEHFYSPPINKAILIAEAIRLVKKFSYSEAC 137 Query: 121 KFVNGVLDKAAPVIRPNK 138 F+ +L+ N+ Sbjct: 138 PFIQAILNDIFTDSSLNE 155 >UniRef50_C6P2V1 Sun protein n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P2V1_9PROT Length = 424 Score = 85.8 bits (212), Expect = 4e-16, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 50/122 (40%), Gaps = 5/122 (4%) Query: 13 AVQALYSWQLSQNDIADVEYQFLA-EQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLS 71 A +A++ ++ V + L E + + ++L G + L ++ L Sbjct: 8 AAKAVHKVVHGGRNLTQVLSETLRKESKLTAQEKGALQDLCYGTLRYYSRLAYMLDSLLQ 67 Query: 72 RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAA 131 R + E + ++L +A+Y+L + V +++A+ AK+ + VN VL Sbjct: 68 RPVRE--PLLGSLLMVAIYQLEH-TKAGKHVIVDQAVHAAKN-TNPAASGLVNAVLRNYL 123 Query: 132 PV 133 Sbjct: 124 RR 125 >UniRef50_D1Y3T9 Transcription antitermination factor NusB n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y3T9_9BACT Length = 174 Score = 85.4 bits (211), Expect = 5e-16, Method: Composition-based stats. Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 1/81 (1%) Query: 55 VATNTAYLDGLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKS 113 V +D L++ Y E + V++ ++R+ALYE VP VA++EA+ LAK Sbjct: 91 VRRALPEIDALIETYSTEWKTERMSLVDRTIIRLALYEAVIAKKVPPGVALSEAVRLAKE 150 Query: 114 FGAEDSHKFVNGVLDKAAPVI 134 +G++DS +FVNGVL + + Sbjct: 151 YGSDDSSRFVNGVLARIVKAL 171 >UniRef50_Q1IY91 rRNA methyltransferase, sun family protein n=3 Tax=Deinococcus RepID=Q1IY91_DEIGD Length = 427 Score = 85.4 bits (211), Expect = 5e-16, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 42/130 (32%), Gaps = 5/130 (3%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR AV+ L + A LAE + D L+ G L+ + P Sbjct: 11 ARALAVRVLTRVLAGETFAAPALDAALAEARLPARDAGLATHLVYGTLRFAPMLEAALAP 70 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 L +A+L +E P A++E + +A+ VN VL Sbjct: 71 LLREKTHSKT---RALLLAGAFEKLVL-GTPPHAALSEYVNVARMARLAP-PGLVNAVLR 125 Query: 129 KAAPVIRPNK 138 + + Sbjct: 126 RVERPAETEE 135 >UniRef50_B4WQD6 Transcription antitermination factor NusB, putative n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WQD6_9SYNE Length = 281 Score = 84.7 bits (209), Expect = 8e-16, Method: Composition-based stats. Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 2/89 (2%) Query: 42 DVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPY 100 D Y ELL + +D + + + + L +V++ +LR+A+ E+ DVP Sbjct: 189 DDIRGYACELLGNWISYQKAIDAQLNEAMEKWSIRRLARVDRDILRLAMIEIVYM-DVPK 247 Query: 101 KVAINEAIELAKSFGAEDSHKFVNGVLDK 129 KVAI+EAIE+AK + ED ++F+NGVL + Sbjct: 248 KVAIDEAIEMAKRYSDEDGYRFINGVLRR 276 >UniRef50_B9CK37 NusB/NOL1/NOP2/sun family protein n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CK37_9ACTN Length = 480 Score = 84.7 bits (209), Expect = 9e-16, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 3/118 (2%) Query: 19 SWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELG 78 ++ + D + + D LL G + LD ++ YL + L Sbjct: 17 QYRRKHARMRDFLRTSHRMDVLGEKDRALATRLLLGSVSAVGELDRVLASYLPKR-RHLE 75 Query: 79 QVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRP 136 + LR+A +E+ P VA+++ +E+A+ A+ + N +L + A + P Sbjct: 76 PKLRDALRLATFEILYL-HTPKHVAVSQGVEMARRASAQ-ATGLANAILRRIATDVSP 131 >UniRef50_Q2ST59 N utilization substance protein B (NusB), putative n=4 Tax=Mollicutes RepID=Q2ST59_MYCCT Length = 132 Score = 84.3 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 5/128 (3%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAE-QDVKDVDVLYFRELLAGVATNTAYLDGL 65 + R+ +QA Y +QL I + L + Q+ + +L+ L+A ++ + Sbjct: 8 SKKRKLLIQAFYKYQLLNASIDYIYQDVLDDVQNFNNKQLLFEINLIAE--KQVDLINHI 65 Query: 66 -MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + + + + V +A+L + YE+ +D P V INE + K + +KFVN Sbjct: 66 NINISSNWKWDRIPAVIRAILIVGTYEILY-TDTPKPVTINEMVNYVKEIEPDFDYKFVN 124 Query: 125 GVLDKAAP 132 VLDK Sbjct: 125 AVLDKIIK 132 >UniRef50_UPI0001C31981 NusB antitermination factor n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31981 Length = 133 Score = 84.3 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 16/128 (12%) Query: 16 ALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-L 74 ALY L+ + + A A D L+ + L Sbjct: 3 ALYQHDLTGRPLEQTLPKDAANFTRALAQAA---------LARQAEFDALISRHAEGWTL 53 Query: 75 EELGQVEKAVLRIALYELSKRSD------VPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 + + +E+++LR++L E+ D +P + AI+EAIE AK++ D+ FVNGVL Sbjct: 54 QRIAPLERSILRVSLLEMLHPGDVPAERPIPPEGAIDEAIETAKAYCGADAPGFVNGVLA 113 Query: 129 KAAPVIRP 136 RP Sbjct: 114 AILRAERP 121 >UniRef50_B0MX54 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MX54_9BACT Length = 312 Score = 84.3 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 1/100 (1%) Query: 41 KDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVP 99 D D + + L N ++ + +E + ++ ++ A+ EL +P Sbjct: 204 SDEDAEFVKTLFEKTLINYNERLEYIEKFTRNWDVERIVFMDNLIMATAITELVSFPSIP 263 Query: 100 YKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 KV ++E I++AK + S F+NGVLDK + K Sbjct: 264 VKVTLDEYIDIAKFYSTPGSSTFINGVLDKIVEALTEEGK 303 >UniRef50_B8BTD6 Predicted protein n=1 Tax=Thalassiosira pseudonana RepID=B8BTD6_THAPS Length = 1014 Score = 84.3 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 58/161 (36%), Gaps = 26/161 (16%) Query: 2 KPAARRR----ARECAVQAL--YSWQLSQNDIADV------EYQFLAEQDVKDVDVLYFR 49 K ++ AR A+ AL + S + Q +++ D + R Sbjct: 502 KSTKKKNVQPTARSIAINALATSAASNSGAHVNAAAFATQQLEQDEHYNEMEARDRAFAR 561 Query: 50 ELLAGVATNTAYLDGLMKPYLSRLLEEL---GQVEKAVLRIALYELSKRSDVPYKVAINE 106 L+A V +DG++ + + + + +A LR + +L D P A E Sbjct: 562 LLVATVERRLGQIDGVLGSCIEKYPPKKGKHSHLIQATLRTGVAQLLFL-DTPPFAANKE 620 Query: 107 AIELAKSFGA----------EDSHKFVNGVLDKAAPVIRPN 137 +++ + E KFVNGV K + + + Sbjct: 621 TVQVLRMHHHLSKTSTYPVPEPMVKFVNGVFRKLSEPLAAD 661 >UniRef50_UPI000185C78C antitermination protein NusB n=1 Tax=Capnocytophaga sputigena ATCC 33612 RepID=UPI000185C78C Length = 302 Score = 84.3 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 1/119 (0%) Query: 21 QLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQ 79 + E F + + +LL A N A L ++ L+ E + Sbjct: 174 EFKNLRPNPPEKYFTPSLYNNSEEKEFLVDLLKKTALNDAKLKSFVEDKLTNWDKERVAV 233 Query: 80 VEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 ++ +L++A+ E +P KV INE +ELAK + S F+NGVL+ + + Sbjct: 234 LDLIILKMAICEFLHFPSIPVKVTINEYLELAKEYSTAKSSLFINGVLNVVHKELSEKE 292 >UniRef50_Q3KKK7 N utilization substance protein B homolog n=9 Tax=Chlamydia RepID=NUSB_CHLTA Length = 168 Score = 83.9 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 4/133 (3%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 +P +++ RE +QALY+ ++ + + E V + Y + N Sbjct: 17 RPFPKQKLRELVLQALYALEIDPEGEDSLVSLLMTEASVSKKNAAYALMFCRAIRANQPD 76 Query: 62 LDGLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSD---VPYKVAINEAIELAKSFGAE 117 LD L+ + L L +E+ +LR+ L+E + D VP + I E L K F Sbjct: 77 LDALLDATIRTTTLARLTIIERNILRMMLFEHQQNQDCCPVPVAILIAETTRLIKKFSYS 136 Query: 118 DSHKFVNGVLDKA 130 + + VL Sbjct: 137 EGSSLILAVLGSI 149 >UniRef50_D1AKD9 Fmu (Sun) domain protein n=4 Tax=Fusobacteriaceae RepID=D1AKD9_SEBTE Length = 437 Score = 83.9 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 40/120 (33%), Gaps = 4/120 (3%) Query: 16 ALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLE 75 L + + + + + ++ N ++D L++ S Sbjct: 11 LLDEIIAGGKYSNLQLNYYFSTKGYNKKEKSFITNIIHTTLKNLIFIDYLIEKNASN--- 67 Query: 76 ELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIR 135 + K +LRI++ + + Y + EA+E AK + FVN +L Sbjct: 68 IKKRKIKQLLRISVAQFLLNKESDYSGIVFEAVETAKII-NKHQTGFVNVILRNIFQKYD 126 >UniRef50_Q5GT93 Transcription termination factor, NusB n=7 Tax=Wolbachia RepID=Q5GT93_WOLTR Length = 160 Score = 83.9 bits (207), Expect = 2e-15, Method: Composition-based stats. Identities = 38/138 (27%), Positives = 57/138 (41%), Gaps = 14/138 (10%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQ----------FLAEQDVKDVDVLYFRELLAG 54 R AR AVQ YS D + E + + ++ D + +LL Sbjct: 13 KRSAARFLAVQVAYSNIFMGYDKSTFELENCGLRNYVGKLADIFECEEFDYQFLEKLLYK 72 Query: 55 VATNTAYLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAK 112 V + D +++ YL L L V ++LR+A+ EL+ D P V INE +A Sbjct: 73 VIRSGGEYDKIIEYYLHPSWSLLRLNLVSLSILRVAVCELANC-DTPAPVVINEYTNIAS 131 Query: 113 SFGA-EDSHKFVNGVLDK 129 F+NG+LDK Sbjct: 132 DLLDKPSEIGFINGLLDK 149 >UniRef50_D1AVZ4 NusB antitermination factor n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AVZ4_STRM9 Length = 133 Score = 83.9 bits (207), Expect = 2e-15, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 59/134 (44%), Gaps = 2/134 (1%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +R R + L+ ++ +DI + + L + + + L N + + Sbjct: 1 MTQREVRNEIFKILFEHEVVNSDIIARKDEVLETLKISNSKREFLENYLNNFMLNESEII 60 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 +K + L EK +L++A +E+ V +++ INEA+EL+K +G E + F Sbjct: 61 EKIKEKIKGWTFSRLATPEKVILKMAFFEILF-EKVGHEIVINEAVELSKVYGDEKTKTF 119 Query: 123 VNGVLDKAAPVIRP 136 +NG+L I Sbjct: 120 INGILADLIKDIDK 133 >UniRef50_P45679 Ribosomal RNA small subunit methyltransferase B n=6 Tax=Coxiella burnetii RepID=RSMB_COXBU Length = 430 Score = 83.5 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 14/129 (10%), Positives = 37/129 (28%), Gaps = 8/129 (6%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 R + + + + + +EL G L + + Sbjct: 2 NTRATTAILVNQVVQKKCSLTALLSA-------NKKNQSLIQELCYGTLRWYFKLKLIAE 54 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 L L + ++ Y+L+ ++P +N+ + A+ + +N +L Sbjct: 55 KLLHAPLRDKDHDIFCLILTGFYQLNYL-NIPTHTIVNQTVGAAEILKKPWAKGLINKLL 113 Query: 128 DKAAPVIRP 136 + Sbjct: 114 RRFIAEKDE 122 >UniRef50_D0WMZ9 B-like utilization substance protein n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WMZ9_9ACTO Length = 171 Score = 83.5 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 54/140 (38%), Gaps = 7/140 (5%) Query: 4 AARRRARECAVQALYSWQLSQ----NDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNT 59 AR + R A+ ++ D+ + + + + ++ A N Sbjct: 15 TARTKQRNRALDVVFEADERGLLGQGDLLALLGERRVVSTSQSPIRDFGASIVEAYAENA 74 Query: 60 AYLDGLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 +D +++ + + V++++LR A EL I E LA+ + E Sbjct: 75 DDIDTIVEAASEDWAMSRMNAVDRSILRAAAAELVYV-GTDRFHVIPEWASLAREYSTER 133 Query: 119 SHKFVNGVLDKAAPVIRPNK 138 S FV GVL++ A IR + Sbjct: 134 SVGFVMGVLNRVA-DIRARE 152 >UniRef50_Q8DKS0 N utilization substance protein B homolog n=1 Tax=Thermosynechococcus elongatus BP-1 RepID=NUSB_THEEB Length = 212 Score = 83.5 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 2/96 (2%) Query: 42 DVDVLYFRELLAGVATNTAYLDGLMKP-YLSRLLEELGQVEKAVLRIALYELSKRSDVPY 100 + Y LL + ++ L+ + LE L Q+++A++ IA+ E+ +V Sbjct: 111 EEVQAYAIALLRCLQRYQNEIEELVNRSMVDWQLERLTQLDRAIIEIAVVEMRYL-EVAK 169 Query: 101 KVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRP 136 +VAINEAIELAK + E SH+F+NGVL + + + P Sbjct: 170 QVAINEAIELAKRYSDEGSHRFINGVLRRISEALDP 205 >UniRef50_B7J3C2 Sun protein n=2 Tax=Acidithiobacillus ferrooxidans RepID=B7J3C2_ACIF2 Length = 434 Score = 83.5 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 41/127 (32%), Gaps = 6/127 (4%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 R+ A+ L S + + D + L+ G + L Sbjct: 19 VRKAAITVLRGVD-SGQTVDAALLPV----SLTGTDRATLQWLVLGTLREFLSVQALSAK 73 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 L + E +L +AL+EL P +N+ +E+ ++ + +N VL Sbjct: 74 LLRKPWREEDADLGFLLSLALFELRHGQR-PAFAVVNDWVEMTEAVKKPWARGLMNAVLR 132 Query: 129 KAAPVIR 135 + Sbjct: 133 RYLRERE 139 >UniRef50_Q8TGY0 tRNA/rRNA cytosine-C5-methylase n=1 Tax=Methanopyrus kandleri RepID=Q8TGY0_METKA Length = 448 Score = 83.1 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 38/122 (31%), Gaps = 4/122 (3%) Query: 12 CAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLS 71 AV+AL + I + + ++ + + + LD L+ Sbjct: 6 LAVKALVLVETRGMPIPEAVERTCRDRPID--VRRSVQAFVYETIKRRNLLDELVAAGSD 63 Query: 72 -RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 + + +LR+ E+ P + + +AK + FVN VL Sbjct: 64 AHPEDVRSPYVRQILRVGTLEMK-IWRNPPPAVTDCMVRIAKRLVGSKAGAFVNAVLRGV 122 Query: 131 AP 132 Sbjct: 123 ER 124 >UniRef50_C5V0U6 Sun protein n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V0U6_9PROT Length = 421 Score = 83.1 bits (205), Expect = 3e-15, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 40/128 (31%), Gaps = 5/128 (3%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAEQDV-KDVDVLYFRELLAGVATNTAYLDGL 65 + A Q + ++ V + L + V ++L G L+ + Sbjct: 2 HNIQLAATQIVQQVMEDGRNLNQVLDESLRRKSVWTPAQRAALQDLSYGTLRFYGQLNAI 61 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 ++ L + +L +ALY+L S ++ A+ A VN Sbjct: 62 LELLLHK--HMTDHRISYLLLVALYQLQY-SRAAQHAVVDHAVRSA-DILNPKIRGLVNA 117 Query: 126 VLDKAAPV 133 +L Sbjct: 118 ILRNFLRN 125 >UniRef50_A1KRE7 SUN-family protein n=32 Tax=Neisseriaceae RepID=A1KRE7_NEIMF Length = 419 Score = 82.7 bits (204), Expect = 3e-15, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 50/129 (38%), Gaps = 5/129 (3%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFL-AEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 A++ A ++ + ++ DV Q A D+ + +++ G L ++ Sbjct: 6 AQKLAADSIAAV-AEGRNLQDVLAQIRTAHPDLTAQENGALQDIAYGCQRYLGSLKHMLA 64 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 L + ++ +++L ALY+L + P +NEA+E G F N +L Sbjct: 65 QMLKKPIDN--PQLESLLLAALYQLHYTRNAP-HAVVNEAVESIAKIGRGQYRSFANAIL 121 Query: 128 DKAAPVIRP 136 + Sbjct: 122 RRFLRERDK 130 >UniRef50_C8NZM3 N utilization substance protein B family protein (Protein NusB) n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZM3_ERYRH Length = 134 Score = 82.4 bits (203), Expect = 4e-15, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 11/135 (8%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLY-----FRELLAGVATN 58 +R R+ A+ A+Y L + + +V +V + +++ V Sbjct: 3 MSRYNERQNAMSAIYIHLLREQSMQEVLEDNRFVSEVGTFIQDFNLQDEMLQVVMNVEAR 62 Query: 59 TAYLDGLMKPYL-SRLLEELGQVEKAVLRIALYELS--KRSDVPYKVAINEAIELAKSFG 115 + YL + LG +E+A+L +A EL + V V +NEA+ LAK F Sbjct: 63 KDIYSRAIDHYLTKWRFDRLGFIEQAILLMACAELELGYQDKV---VIVNEAVNLAKDFS 119 Query: 116 AEDSHKFVNGVLDKA 130 E+S+K +NGV+D Sbjct: 120 DEESYKLINGVIDAL 134 >UniRef50_C6XT54 NusB/RsmB/TIM44 n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6XT54_PEDHD Length = 316 Score = 81.6 bits (201), Expect = 6e-15, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 1/95 (1%) Query: 42 DVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPY 100 D + +L + GL+ E + ++ ++++A+ EL +P Sbjct: 207 AEDSKFVEDLFVHTLKSDKEYQGLIAERTKNWESERIALMDTILMKMAICELMNFPSIPV 266 Query: 101 KVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIR 135 KV INE ++L+K + S+ F+NG+LDK ++ Sbjct: 267 KVTINEYLDLSKDYSTPKSNSFINGILDKILGDLK 301 >UniRef50_C1SIP0 tRNA/rRNA cytosine-C5-methylase n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SIP0_9BACT Length = 379 Score = 81.6 bits (201), Expect = 7e-15, Method: Composition-based stats. Identities = 16/103 (15%), Positives = 37/103 (35%), Gaps = 7/103 (6%) Query: 34 FLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELS 93 + + +R++ + +++ + + E G +A L + ++ Sbjct: 21 LREDYFEDSAEQRLYRKIYFETFRHLGFIEKCLDKLYT---EMPGPELRAALALGTCQIL 77 Query: 94 KRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRP 136 D+P A+NE++ L + + FVN VL Sbjct: 78 FMDDIPDYAAVNESVILVQM----NKRSFVNAVLRNVGRRKEE 116 >UniRef50_A6G719 Putative uncharacterized protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G719_9DELT Length = 169 Score = 81.6 bits (201), Expect = 7e-15, Method: Composition-based stats. Identities = 36/144 (25%), Positives = 56/144 (38%), Gaps = 22/144 (15%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVD----------------- 44 KP +R R RE A+ + + F E+ +VD Sbjct: 7 KPTSRARGRELALWLMCHLERRGEGSRAALELFWTERPEFEVDDDFLGVAGPQMRDIIED 66 Query: 45 ---VLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPY 100 + R L + A +D + R +E + +V++ VLR+A EL P Sbjct: 67 SSARRWARRLTEAYLEDAAAVDQAIGAASERWRIERMDRVDRNVLRLAAVELR-TQKTPR 125 Query: 101 KVAINEAIELAKSFGAEDSHKFVN 124 V + EA+ LA +G+E S FVN Sbjct: 126 NVVVAEAVRLAARYGSERSAAFVN 149 >UniRef50_Q26ET0 Putative antitermination protein NusB n=1 Tax=Flavobacteria bacterium BBFL7 RepID=Q26ET0_9BACT Length = 312 Score = 81.6 bits (201), Expect = 7e-15, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 44/99 (44%), Gaps = 1/99 (1%) Query: 41 KDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVP 99 + DV + +L N ++ + + Q++ ++ +A E K + +P Sbjct: 204 DEDDVKFTMDLFRKTLFNREEFLERIEGKTPNWEQDRIAQIDLVLIMMAQCEFLKFNSIP 263 Query: 100 YKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 KV++NE +E++K + S F+NG+LD + Sbjct: 264 VKVSLNEYLEISKDYSTPKSSFFINGILDNLSKEYEKEG 302 >UniRef50_C6XFI6 Fmu (Sun) domain protein n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XFI6_LIBAP Length = 445 Score = 81.6 bits (201), Expect = 8e-15, Method: Composition-based stats. Identities = 22/138 (15%), Positives = 47/138 (34%), Gaps = 7/138 (5%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQD---VKDVDVLYFRELLAGVAT 57 MK AR + L + + + + + D + R ++ Sbjct: 1 MKSGM--NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 Query: 58 NTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKS-FGA 116 +D ++ L L + +LR+++ ++ DV ++ A+E AK Sbjct: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 Query: 117 EDSHKFVNGVLDKAAPVI 134 K VN +L + + Sbjct: 118 RHFAKLVNSILRRVSREK 135 >UniRef50_Q11SB2 Antitermination factor n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11SB2_CYTH3 Length = 389 Score = 81.6 bits (201), Expect = 8e-15, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 4/114 (3%) Query: 29 DVEYQFLAEQDVK---DVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAV 84 + + + + D + EL + L+ + +E L ++ + Sbjct: 263 ETTDEMYELPSLSPNWEDDQEFMLELYKESTAFDDAAEKLITDKVQNWDIERLAFTDRII 322 Query: 85 LRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 L++AL E+ K ++P KV INE IEL+KS+ S +FVNG+LD + ++ + Sbjct: 323 LKMALTEMVKFPNIPVKVTINEYIELSKSYSTPKSKQFVNGLLDTISIDLQKSG 376 >UniRef50_C5A6U4 SAM-dependent tRNA/rRNA cytosine-C5 methylase n=6 Tax=Thermococcus RepID=C5A6U4_THEGJ Length = 451 Score = 80.8 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 44/125 (35%), Gaps = 4/125 (3%) Query: 11 ECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVD--VLYFRELLAGVATNTAYLDGLMKP 68 E AL + + + + KD + + + A +D ++ Sbjct: 11 EVVADALSLVEERELSSKHALERVFRKVAGKDREKARGLAHAYVFEIEKWRAKIDFIINS 70 Query: 69 YLSR-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 L +E+L +LRI +E+ R VP +A + I + K KFVN ++ Sbjct: 71 VLKGSKVEDLDPYLANLLRIGTFEIHFR-KVPPAIATDSIIRVVKERFDFSRAKFVNALM 129 Query: 128 DKAAP 132 Sbjct: 130 HSIEK 134 >UniRef50_C6QJ47 Sun protein n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QJ47_9RHIZ Length = 468 Score = 80.8 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 4/126 (3%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR+ AV AL+S + + DV + A +++ D + R + V N L +++ Sbjct: 39 ARDVAVSALFSVLVEKRPFDDVFAKAAAARNLAPRDRAFARLIATTVLRNRGSLQAVLRT 98 Query: 69 YLSRLL-EELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKS-FGAEDSHKFVNGV 126 YL + L E LG++E+ +L A P AI+ A++ ++ + VN V Sbjct: 99 YLEKPLPEHLGRLEQILLAAAA--QLLLIKTPPHAAISLAVDQCRADRVGKRFGNLVNAV 156 Query: 127 LDKAAP 132 L + + Sbjct: 157 LRRLSE 162 >UniRef50_A4BP82 Fmu, rRNA SAM-dependent methyltransferase n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BP82_9GAMM Length = 423 Score = 80.4 bits (198), Expect = 1e-14, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 47/123 (38%), Gaps = 2/123 (1%) Query: 14 VQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL 73 +Q L + + +A D +EL GV + L+ L+ L + Sbjct: 1 MQTLQDVLAHGRTLPNALADSVAALQ-DSRDRALCQELCYGVLRWHSRLEALVLNLLEQR 59 Query: 74 LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPV 133 + +L + LY+L + +P A++ ++ A++ G + +VN VL + Sbjct: 60 PRNRDRDLTLLLELGLYQLMY-TQIPPHAAVSATVDTARALGKSWAAGWVNAVLRRFQRE 118 Query: 134 IRP 136 Sbjct: 119 RAN 121 >UniRef50_D0KVS1 Sun protein n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KVS1_HALNC Length = 437 Score = 80.4 bits (198), Expect = 2e-14, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 41/124 (33%), Gaps = 3/124 (2%) Query: 14 VQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL 73 Q L S + + L++ V + + V + L L R Sbjct: 11 AQLLLSVVGQGVSLDAALGRVLSQAQ--PVHRGLVQAMGYEVLRHYEALVFWRDSLLERP 68 Query: 74 LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPV 133 + + +L + L + + ++N A++ A+ G + +N VL +A Sbjct: 69 IPAKSAIIALLLLVGLERIRGARREASR-SVNSAVQAARELGHPWATGLLNAVLRRAVRQ 127 Query: 134 IRPN 137 I Sbjct: 128 IEEG 131 >UniRef50_B2SFT3 tRNA and rRNA cytosine-C5-methylase, sun protein n=17 Tax=Francisella RepID=B2SFT3_FRATM Length = 426 Score = 80.0 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 5/130 (3%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 R A + + ++ + +E + + + + D + + L + L+ ++ Sbjct: 2 NTRAIAAKTILDILDNKYSLLTIEQKLVKLN-LLEQDKSFIKLLCYEFFRHYYSLEKIIA 60 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 YL++ + +V ++ + ++ PY INE + K + K VN +L Sbjct: 61 LYLTQKTKVKAKV---LIMLGALQI-FEIKQPYYATINETVAACKVLKIIWAKKLVNRIL 116 Query: 128 DKAAPVIRPN 137 + I Sbjct: 117 REMTRNIEDI 126 >UniRef50_D2UG22 Putative trna and rrna cytosine-c5-methylase protein n=1 Tax=Xanthomonas albilineans RepID=D2UG22_XANAL Length = 437 Score = 79.7 bits (196), Expect = 2e-14, Method: Composition-based stats. Identities = 15/115 (13%), Positives = 34/115 (29%), Gaps = 2/115 (1%) Query: 23 SQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEK 82 + L D + V + ++ +L + L + + Sbjct: 27 RGRSLKAELAAALPGLP-DARDRALVEAICFAVLRRRPAYEAALRLWLQKQLPQRDAELR 85 Query: 83 AVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPN 137 A+L +L + A++ +E ++ VN +L +A P Sbjct: 86 ALLLAGFAQLDVL-GLAPHAALSATVEATRALERPRQAGLVNALLRRALRDGLPE 139 >UniRef50_Q16CE2 RRNA methyltransferase RsmB n=15 Tax=Rhodobacterales RepID=Q16CE2_ROSDO Length = 423 Score = 79.7 bits (196), Expect = 3e-14, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 38/129 (29%), Gaps = 7/129 (5%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR AV L ++++ ++ D L D +++ Sbjct: 8 ARRSAVYLLDQILGEGRLMSELL-TAGTLDKLEPEDRARAARLAQDTLRGLERADRILQK 66 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA-EDSHKFVNGVL 127 +LS+ + LR+ EL + +N +EL N VL Sbjct: 67 HLSK---YPPLTVRNALRVGAVEL--CTGTAAHGVVNAMVELVSRHKHYSHLKGLTNAVL 121 Query: 128 DKAAPVIRP 136 K A Sbjct: 122 RKVAADGPA 130 >UniRef50_D0RNV5 N utilization substance protein B n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RNV5_9RICK Length = 127 Score = 79.3 bits (195), Expect = 3e-14, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 58/138 (42%), Gaps = 15/138 (10%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK R + VQ +Y + + + D KD + + +++ G Sbjct: 1 MKSGTRTKL----VQKIYEKTKNPDGVIDF---------GKDPYIRHIKKVFKGYFEQEE 47 Query: 61 YLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 L+ ++ L + L + +L+ ++YEL +P+KV IN+ +++ F D Sbjct: 48 QLNEILSRSLSAEIKQKNLDSLLNIILKTSIYELKFCEKIPFKVVINQYLDVTAQFYGND 107 Query: 119 SHKFVNGVLDKAAPVIRP 136 + VNGVLD A + Sbjct: 108 QKRLVNGVLDNVAKSLNS 125 >UniRef50_C9LEM4 NusB family protein n=1 Tax=Prevotella tannerae ATCC 51259 RepID=C9LEM4_9BACT Length = 309 Score = 79.3 bits (195), Expect = 3e-14, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 42/98 (42%), Gaps = 1/98 (1%) Query: 42 DVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPY 100 + D + EL + L++ L ++ +++IAL E+ +P Sbjct: 208 EDDHQFALELFQTTIERGDEMRDLIRNNSKNWEFGRLAFMDVIIMQIALTEMLTFPTIPL 267 Query: 101 KVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 V NE +++AK + S ++NG+LD ++ K Sbjct: 268 NVTFNEYLDIAKIYSTPRSSSYINGLLDHVVKYLQAEK 305 >UniRef50_A6FYF2 Ribosomal RNA small subunit methyltransferase B n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6FYF2_9DELT Length = 453 Score = 79.3 bits (195), Expect = 4e-14, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 2/91 (2%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAE-QDVKDVDVLYFRELLAGVATNTAYLDGLM 66 R AV+ L + Q + + L D+ D L+ GV + LD + Sbjct: 12 NPRRLAVRTLREIEQRQGFSNRILSEQLERFPDLDPRDRGLITTLVYGVLRHRGRLDAHL 71 Query: 67 KPYLSRLLEELGQVEKAVLRIALYELSKRSD 97 + +L + +LR+A YE+ + Sbjct: 72 DAAADKP-HKLKGELRTILRVAAYEVLELDR 101 >UniRef50_UPI0000E87C3C sun; rRNA methylase n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87C3C Length = 423 Score = 78.5 bits (193), Expect = 5e-14, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 50/136 (36%), Gaps = 11/136 (8%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 M + R A + L N++ V + L D V + + G Sbjct: 1 MHESQRYAA------IIIDGVLDGNNLDHVFEKILKNPD-DSVQQSQVKAITYGTLRYMG 53 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 + L+ + +E +V ++++ +A+Y+L++ + +++A+ AK S Sbjct: 54 QSNYLIGKLIKNKIEN--RVLESLIHVAIYQLTQEAHT-DFTVVDQAVRAAKKIDFRKS- 109 Query: 121 KFVNGVLDKAAPVIRP 136 VN VL Sbjct: 110 NLVNAVLRTFLRNKEK 125 >UniRef50_B6BVG1 Sun protein n=1 Tax=beta proteobacterium KB13 RepID=B6BVG1_9PROT Length = 412 Score = 78.1 bits (192), Expect = 7e-14, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 54/124 (43%), Gaps = 9/124 (7%) Query: 13 AVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSR 72 A + L +S I + +FL E++ + + ++++ G + D ++K ++ + Sbjct: 8 AAKILSE-LISGRKIDTLFNRFLKEEN----NKNFIKDIVYGGIRDFYLNDYILKKFVKK 62 Query: 73 LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAP 132 + + K +L +Y+++ +S +NEA++ AK + + VN VL Sbjct: 63 DIN--DHLIKYLLMNTIYQINHQSK-AEFTVVNEAVKAAKKINN-NFYNLVNAVLRNYLR 118 Query: 133 VIRP 136 Sbjct: 119 EKDK 122 >UniRef50_B9YCQ6 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YCQ6_9FIRM Length = 115 Score = 77.7 bits (191), Expect = 1e-13, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 56/115 (48%), Gaps = 4/115 (3%) Query: 17 LYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLS-RLLE 75 LY +L + ++ + + + + D + R L+ N + L E Sbjct: 4 LYQHRLLNKPMDEIIEEVMEMKTGELDD--FSRILILDTLDNENRYIQYINETLKDWSFE 61 Query: 76 ELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 LG +E+A+L +A EL ++ + I+EA+ LAK + +++++ +NGVLD+ Sbjct: 62 RLGVLEQAILLMACSELDHQT-ASAAIIIDEAVRLAKDYCDDEAYRLINGVLDRI 115 >UniRef50_Q7V9D9 Antitermination protein NusB n=18 Tax=cellular organisms RepID=Q7V9D9_PROMM Length = 222 Score = 77.7 bits (191), Expect = 1e-13, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 60/132 (45%), Gaps = 7/132 (5%) Query: 3 PAARRRARECAVQALY---SWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNT 59 ++ + RE +QA ++ + + LA + ++ L E + V Sbjct: 85 SSSTSQVREH-LQACLIGAEQVINGVSTSLEISRLLALGN-QEQIRLGALERVRLVIEQR 142 Query: 60 AYLDGLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 +D + + L L ++++ +LR+A+ +L+ P+ VA NEA+ELA + + Sbjct: 143 NSIDASIDAVMEGWRLSRLPRIDRDILRLAVVDLTALQ-TPFAVACNEAVELAHRYSDDQ 201 Query: 119 SHKFVNGVLDKA 130 + +NGVL + Sbjct: 202 GRRMINGVLRRL 213 >UniRef50_A4E6P2 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E6P2_9ACTN Length = 118 Score = 77.7 bits (191), Expect = 1e-13, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 2/66 (3%) Query: 76 ELGQVEKAVLRIALYELSKRSD--VPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPV 133 + ++ +LRIA+YE+ +D V + INEA+ELAK++G + S FVNGVL K A Sbjct: 2 RMPGADRNLLRIAVYEMRFLTDEEVSDAIVINEAVELAKAYGTDQSASFVNGVLGKIARS 61 Query: 134 IRPNKK 139 + Sbjct: 62 EELPGE 67 >UniRef50_C7RGU2 Fmu (Sun) domain protein n=4 Tax=Anaerococcus RepID=C7RGU2_ANAPD Length = 430 Score = 77.3 bits (190), Expect = 1e-13, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 46/129 (35%), Gaps = 6/129 (4%) Query: 11 ECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL 70 E + +L + ++ Y +++ GV N Y+D ++ Sbjct: 5 ELILNSLVRIICEDKKSNEEINYLEKRVG----NLPYATKVIYGVLENKIYIDYMIGKLS 60 Query: 71 SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 L+++ + +L I +Y + + +++ +EL K S FVN +L Sbjct: 61 KIKLKKIHKNVLTILEIGIYNIHFL-ETKDYATVDKLVELTKR-KNRRSSGFVNAILRNF 118 Query: 131 APVIRPNKK 139 + K Sbjct: 119 IRDEKEIAK 127 >UniRef50_C1TRU2 tRNA/rRNA cytosine-C5-methylase n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TRU2_9BACT Length = 479 Score = 77.3 bits (190), Expect = 1e-13, Method: Composition-based stats. Identities = 16/127 (12%), Positives = 36/127 (28%), Gaps = 4/127 (3%) Query: 11 ECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL 70 E A++ ++ V + D L+ + + ++ +L Sbjct: 45 EAALEVWREV-RRGRFASESLRAISDR--VSEKDRPLAATLVYSLIRRESLWKEIVGRFL 101 Query: 71 SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 + + L + + +V +N +E K E + VN VL + Sbjct: 102 KTGSSGVSPAVRDALMVGAAGSLELRTFEPRVLVNALVEWTKCR-DERGSRVVNAVLRRI 160 Query: 131 APVIRPN 137 Sbjct: 161 VEGGPEI 167 >UniRef50_Q40J48 N utilization substance protein B, putative n=4 Tax=canis group RepID=Q40J48_EHRCH Length = 174 Score = 77.3 bits (190), Expect = 1e-13, Method: Composition-based stats. Identities = 23/136 (16%), Positives = 55/136 (40%), Gaps = 9/136 (6%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADV------EYQFLAEQDVKDVDVLYFRELLAGVA 56 + + R A+Q YS + I D+ Y+ D+ +D +++ + Sbjct: 12 HSKKTTTRFLAIQGTYSMIFNNYTINDIDNLIDYLYEMKEVLDLIQIDNQLLLKIMNTML 71 Query: 57 TNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 ++ + +L ++ + + ++++ A+ EL SD + INE + +A Sbjct: 72 LTFNTINSTIATFLNEKWSIDRINLISLSIIKTAVCELI-CSDTDAVIIINEYVNIASHI 130 Query: 115 GAEDSHKFVNGVLDKA 130 F+N +L++ Sbjct: 131 LERTDVNFINAILNQV 146 >UniRef50_D1N3Y9 Fmu (Sun) domain protein n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N3Y9_9BACT Length = 409 Score = 77.3 bits (190), Expect = 1e-13, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 7/126 (5%) Query: 11 ECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL 70 E AV L + + + ++ D L ++ LL +L+G + Sbjct: 13 EEAVAGLAAVEAGEANLDDFLDFRLQYPEL----RRSISNLLFLCFRRKRFLEGWIGRLA 68 Query: 71 SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 +R + +L L +++ ++ + + A+N A+ L K G KFVN VL +A Sbjct: 69 ARPPR---PAVRRLLTAVLAQITFQTGIAPESAVNIAVGLVKHSGKLQEAKFVNAVLRRA 125 Query: 131 APVIRP 136 +P Sbjct: 126 LEQPQP 131 >UniRef50_C9M5B8 Putative Sun protein n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M5B8_9BACT Length = 438 Score = 77.0 bits (189), Expect = 2e-13, Method: Composition-based stats. Identities = 18/126 (14%), Positives = 35/126 (27%), Gaps = 6/126 (4%) Query: 11 ECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL 70 E A++ L + + Q L + + D L+ L YL Sbjct: 5 EAALKVLSAVEKGGFAS-----QKLRDLPLDAPDRTLAASLVYACLRRAELWRFLAFEYL 59 Query: 71 SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 E + L++ + + +N ++ K K VN V+ + Sbjct: 60 RPKPEGFSPSVRLALQLGAAGALELKNFAVPALVNGLVDWTKR-SDRGGAKVVNAVMRRL 118 Query: 131 APVIRP 136 Sbjct: 119 LDQGPA 124 >UniRef50_Q7V3R0 Antitermination protein NusB n=7 Tax=Prochlorococcus marinus RepID=Q7V3R0_PROMP Length = 209 Score = 77.0 bits (189), Expect = 2e-13, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 2/79 (2%) Query: 55 VATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKS 113 + N +D + + R L+ L +V++ +LR+A ++ D P VA +EA+ LA Sbjct: 128 IINNLKSIDSEIDEVMDRWRLKRLPRVDRDILRLAYVDIHFL-DTPVAVACDEAVNLANK 186 Query: 114 FGAEDSHKFVNGVLDKAAP 132 + K +NGVL + Sbjct: 187 YCDTQGRKMINGVLRRLQR 205 >UniRef50_A5V7N4 Fmu (Sun) domain protein n=7 Tax=Sphingomonadales RepID=A5V7N4_SPHWW Length = 422 Score = 76.6 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 42/128 (32%), Gaps = 7/128 (5%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR A++ L + + A+ D D D + + A V TA LD L+ Sbjct: 10 ARRAALRLLDAVLRRGLPLEAAMDGACADLDRAD-DRGFAHAIAAEVLRRTADLDALIDG 68 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 R L + VLRIAL + P AI + L K V+ V Sbjct: 69 ATERPLPA-DAKARMVLRIALAQALAL-GTPGHAAITTVLPLV----DGGPRKLVHAVFG 122 Query: 129 KAAPVIRP 136 Sbjct: 123 AVMRDGAA 130 >UniRef50_B6WUQ6 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WUQ6_9DELT Length = 505 Score = 76.6 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 40/119 (33%), Gaps = 7/119 (5%) Query: 24 QNDIADVEYQFLAE------QDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEEL 77 I Q L + + + D EL G L ++ L + L+ Sbjct: 56 GCTIQAALQQVLEDTARRQEGGLAERDRHLAAELAYGTLRMENRLAFVLGKVLRQPLKLP 115 Query: 78 GQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRP 136 + + + +A Y L +P ++ A++LA+ K VNG L + Sbjct: 116 LPLRRLL-AVAAYGLLFLDRLPAHAVLHTAVDLARQLYGPGLAKVVNGSLRSVQRLGDA 173 >UniRef50_C5SHX2 Sun protein n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SHX2_9CAUL Length = 464 Score = 75.4 bits (185), Expect = 5e-13, Method: Composition-based stats. Identities = 16/129 (12%), Positives = 46/129 (35%), Gaps = 8/129 (6%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR A+ + + ++ + + + + + L V LD ++ Sbjct: 45 ARVAAITLVEAALEKRSGFDEAAASA-DFLKLSETERAFAGALALLVLRRLGQLDHVI-- 101 Query: 69 YLSRLLEELGQ-VEKAVLRIALYELSKRSDVPYKVAINEAIELA-KSFGAEDSHKFVNGV 126 + +++ + +LRI + ++ VP A++ +++A + +N + Sbjct: 102 --HKKTQKMPPEAVRQLLRIGMAQIFFMQ-VPDFAAVSTTVKIAERENKTRPFKGLINAI 158 Query: 127 LDKAAPVIR 135 L + Sbjct: 159 LRGLIRDGK 167 >UniRef50_Q8TGZ4 tRNA/rRNA cytosine-C5-methylase n=1 Tax=Methanopyrus kandleri RepID=Q8TGZ4_METKA Length = 452 Score = 75.0 bits (184), Expect = 6e-13, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 50/134 (37%), Gaps = 6/134 (4%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDV-KDVDVLYFRELLAGVATNT 59 M +R+ E + W+ ++ + + + L + V + Sbjct: 1 MSSLSRQ---ELTARVFVEWEETRRSLRECVKKVLLNEGVRDHRVWGTIHAYCFELMKRL 57 Query: 60 AYLDGLMKPYLSR-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 +D ++ + L +L + LR+ +E+ +DV +A NEA+++ E Sbjct: 58 RTVDAFLEATIRNAKLFDLDPWVRNALRVGTFEMKF-NDVKPAIATNEAVKIVVECVGEG 116 Query: 119 SHKFVNGVLDKAAP 132 +FVN VL Sbjct: 117 PARFVNAVLYDVER 130 >UniRef50_B1ZZX2 Fmu (Sun) domain protein n=2 Tax=Opitutaceae RepID=B1ZZX2_OPITP Length = 488 Score = 75.0 bits (184), Expect = 7e-13, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 49/153 (32%), Gaps = 31/153 (20%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 AR A A + L W + + ++ + + + L+ G + +D Sbjct: 7 ARTTAWPAAARLLARWLDRRERVDELLESL--GGSLTGTERARCQHLVFGAIRHFGRIDA 64 Query: 65 LMKPYLSRLLEELGQVEKAVLRIALYELS-------------------KRSDVPYKVA-- 103 + +S +AVL +A +EL D P V Sbjct: 65 AIGRLVSHSPRF---ATRAVLLVAGFELIEARAERGGAPTRASEAGTTNAPDQPTPVVDG 121 Query: 104 -----INEAIELAKSFGAEDSHKFVNGVLDKAA 131 ++ A+E K + + VN V+ K A Sbjct: 122 RVAKIVHHAVEQTKQLASPAEARMVNAVVRKLA 154 >UniRef50_D1Y2M1 Fmu n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y2M1_9BACT Length = 439 Score = 74.3 bits (182), Expect = 1e-12, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 39/127 (30%), Gaps = 4/127 (3%) Query: 11 ECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL 70 E A+ +++ V D L + + + L + +L Sbjct: 13 EAAMYLWRQVDKGGI-VSESLRTL--GDRVSPPDRTLAASLAYALVRRLSLWEHLREKFL 69 Query: 71 SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 E+ Q +A + + L++ V I+ IE K+ + VN VL + Sbjct: 70 LPRPEKFSQSVRAAVLMGAAGLTELEKFAPAVLISSLIEWTKTR-DPRGARVVNAVLRRV 128 Query: 131 APVIRPN 137 Sbjct: 129 LEEGPAE 135 >UniRef50_C7I4U3 Sun protein n=1 Tax=Thiomonas intermedia K12 RepID=C7I4U3_THIIN Length = 457 Score = 73.9 bits (181), Expect = 2e-12, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 46/144 (31%), Gaps = 13/144 (9%) Query: 3 PAARRRARE---CAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNT 59 P+A+R R Q + + Q + ++ Q + L V + Sbjct: 12 PSAQRPLRRDLIACAQLIGAVQ-AGASLSTALPQAATRGKWDASQRGAAQALSFAVLRHL 70 Query: 60 AYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYK----VAINEAIELAKSF- 114 + L+ + + + + VL+ AL D P +N+A+E K Sbjct: 71 GTVRALLTDLQPKPIH--PPLLRDVLQTALA--LLLPDAPAHYAAHTVVNQAVEACKRTP 126 Query: 115 GAEDSHKFVNGVLDKAAPVIRPNK 138 + F N +L + + Sbjct: 127 SLRHAQGFANALLRRFVSRTADIE 150 >UniRef50_B5Y8M6 Putative uncharacterized protein n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y8M6_COPPD Length = 148 Score = 72.3 bits (177), Expect = 4e-12, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 2/130 (1%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 RE +Q L ++L D+ + D + + LL N +D + Sbjct: 13 RELLLQELLGYELGLTSQEDLWPRLKVALPKSDRVKRHIKRLLNAYLENREEIDIWIDHS 72 Query: 70 LS-RLLEELGQVEKAVLRIALYELSKR-SDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 L + +EK ++R+A+ E + + ++ +++A+ + E K ++ ++ Sbjct: 73 LKSKSFAAYSDLEKMIMRLAVVETRFFGDEKMMPIIVSTWVDIARRYVDESFAKAIHAIM 132 Query: 128 DKAAPVIRPN 137 + Sbjct: 133 GTCYEEQNAD 142 >UniRef50_Q601I2 Putative uncharacterized protein n=5 Tax=Mycoplasma hyopneumoniae RepID=Q601I2_MYCH2 Length = 253 Score = 72.3 bits (177), Expect = 4e-12, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 12/132 (9%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 RR R + +Y WQL +I + + +D +LL + N ++L Sbjct: 119 TKRRLGRMGVISIIYIWQLFDKNID--IKEIKTKYFELTIDQ---LKLLNFIKKNYSFLR 173 Query: 64 GLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG--AEDS 119 ++ L E + + +++L + EL VP ++ NEA+E+ K F ++ Sbjct: 174 KVINLQLKSNWNWERILPLIRSILLVGAAELFF---VPSRIVFNEAVEITKIFSIAGDNE 230 Query: 120 HKFVNGVLDKAA 131 FVN VL K Sbjct: 231 FCFVNAVLQKIY 242 >UniRef50_Q46I53 Antitermination protein NusB n=2 Tax=Prochlorococcus marinus RepID=Q46I53_PROMT Length = 208 Score = 72.3 bits (177), Expect = 5e-12, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 2/91 (2%) Query: 42 DVDVLYFRELLAGVATNTAYLDGLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPY 100 + V +D + + L+ L +++ +LR+A +L + P Sbjct: 110 KEIRELALRRVDLVIEKQDEIDHKLDSVMEGWRLKRLPRIDSDILRLAWVDLIDF-NTPM 168 Query: 101 KVAINEAIELAKSFGAEDSHKFVNGVLDKAA 131 V NEA+ LA + E + +NGVL K Sbjct: 169 AVTCNEAVNLANRYSDEQGRRMINGVLRKLQ 199 >UniRef50_A9RW70 Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RW70_PHYPA Length = 207 Score = 72.0 bits (176), Expect = 5e-12, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 49/125 (39%), Gaps = 4/125 (3%) Query: 11 ECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY- 69 E AL ++ + + R L+ A + ++ Sbjct: 84 EATAMALEEALDAEASLEASVLTAPPPLVYNSFALRLARTLVKETAYRWLQQEAILMEII 143 Query: 70 -LSRLLEELGQVEK-AVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 L ++ + + VL++AL E+ +DVP +V +NEA+ELAK F + + +NG L Sbjct: 144 PLKWKVQPKAALLQICVLQMALAEIE-ATDVPPRVVVNEAVELAKRFCDLAAPRIINGCL 202 Query: 128 DKAAP 132 Sbjct: 203 GSYIR 207 >UniRef50_B6YR78 Transcription termination factor NusB n=1 Tax=Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 RepID=B6YR78_AZOPC Length = 305 Score = 72.0 bits (176), Expect = 5e-12, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 60/127 (47%), Gaps = 4/127 (3%) Query: 12 CAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLS 71 ++ L +Q +++ V + ++ + R + N+ +D MK + Sbjct: 182 LVLKTLKQFQ-NRSIAEPVLLPLFKDNTTQEYAIQLLRSSIIEAEENSDLIDTQMK---N 237 Query: 72 RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAA 131 + + ++ ++++AL EL+ +P KV +NE I+LA+ + S F+NG+L Sbjct: 238 WDKKRIALLDLIIMQMALAELNNFPAIPLKVTLNEYIDLARYYSTPKSTSFINGILQAIV 297 Query: 132 PVIRPNK 138 +++ NK Sbjct: 298 SILKINK 304 >UniRef50_Q2GCQ0 Putative N utilization substance protein B n=2 Tax=Neorickettsia RepID=Q2GCQ0_NEOSM Length = 141 Score = 72.0 bits (176), Expect = 6e-12, Method: Composition-based stats. Identities = 32/138 (23%), Positives = 61/138 (44%), Gaps = 5/138 (3%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVK---DVDVLYFRELLAGVATNT 59 P+ +R AR +++ YS S +++ + L Q++ D+ +L N Sbjct: 2 PSEKRVARLLSIEVCYSSYFSDLPQSELISRALELQEMPYMKRYDLELLNSILDLCLANV 61 Query: 60 AYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 L+ +L + + ++ ++LR+A+ EL S + INE + L F + Sbjct: 62 EADTELIGRFLSEEWEINRIDNLKLSLLRVAISELRLSSVGQRNLVINEYVSLGGLFLSV 121 Query: 118 DSHKFVNGVLDKAAPVIR 135 FVN +L+K A I+ Sbjct: 122 KEVGFVNAILEKLASEIQ 139 >UniRef50_D2RGI9 Fmu (Sun) domain protein n=2 Tax=Archaeoglobaceae RepID=D2RGI9_ARCPR Length = 443 Score = 71.6 bits (175), Expect = 7e-12, Method: Composition-based stats. Identities = 19/134 (14%), Positives = 43/134 (32%), Gaps = 7/134 (5%) Query: 11 ECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL 70 E + L + ++ + + L+ + + + +D ++ Sbjct: 6 ELVAEVLKVIEETKLSEKEAIKRCLSGKISDHAIWSSVHAYVFEIEKRLNLIDFIL-RNC 64 Query: 71 SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK- 129 R ++ V K +LR+ +YE+ V +A + + + K N VL + Sbjct: 65 FREFDKQNTVFKNLLRVGVYEM-HFKGVHPALATDSIVRIVKQRFNLKMASLANAVLRRA 123 Query: 130 ----AAPVIRPNKK 139 R K Sbjct: 124 EKFDYERRFRKLGK 137 >UniRef50_Q2YC21 Sun protein n=7 Tax=Betaproteobacteria RepID=Q2YC21_NITMU Length = 442 Score = 71.6 bits (175), Expect = 7e-12, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 47/145 (32%), Gaps = 20/145 (13%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLA-EQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R R A +S + V + + D ++L GV LD L Sbjct: 3 RTQRLAATTV--ERVVSGASLTTVLQETWRSHSGLSDQQRGAIQDLSYGVLRFYGQLDIL 60 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIEL----------AKSFG 115 + L++ L+ Q + +L + LY+L S V ++ A+ +++ Sbjct: 61 LGLLLNKPLK--DQSLRYLLLVGLYQLQY-SKTAPHVVVDSAVSASCSPSIDGRNSRNML 117 Query: 116 AEDSHK----FVNGVLDKAAPVIRP 136 K VN +L Sbjct: 118 DPRHAKSIGGLVNAILRNFLRKRPA 142 >UniRef50_Q7Y092 Os03g0656900 protein n=9 Tax=Poaceae RepID=Q7Y092_ORYSJ Length = 287 Score = 71.6 bits (175), Expect = 7e-12, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 55/126 (43%), Gaps = 5/126 (3%) Query: 11 ECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL 70 E A + + + + A+V + + + RE+L VA+ ++ Sbjct: 148 EEAEKLMSQNEKDSANEAEVL-SAPPKLVYNNFVLRLAREILVAVASGWDKHVDIINKIT 206 Query: 71 --SRLLEELGQV-EKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 + E + ++ E +L IA+ E++ P+K+ INEA++LAK F + + +NG L Sbjct: 207 PQNWKDEPVARILELCILHIAMAEMT-SKGTPHKIVINEAVDLAKRFCDGGAPRVINGCL 265 Query: 128 DKAAPV 133 Sbjct: 266 RTFVKD 271 >UniRef50_Q9V089 Sun/NOL1/NOP nucleolar protein n=3 Tax=Pyrococcus RepID=Q9V089_PYRAB Length = 450 Score = 71.2 bits (174), Expect = 9e-12, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 42/125 (33%), Gaps = 4/125 (3%) Query: 11 ECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVD--VLYFRELLAGVATNTAYLDGLMKP 68 E AL + + + + KD + + + A +D ++ Sbjct: 11 EIIADALTLVEEKELSSKHALERIFKRVEGKDKETARGIAHAYVFEIEKWRAKIDFILNS 70 Query: 69 YLSR-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 L +E+L +LRI +E+ V +A + + + K KF N +L Sbjct: 71 VLRGSKVEDLDLYLANLLRIGTFEMKF-KGVNPAIATDSVVRVVKEKFDLTKAKFANAIL 129 Query: 128 DKAAP 132 + Sbjct: 130 REVEK 134 >UniRef50_B6W6K6 Putative uncharacterized protein n=1 Tax=Anaerococcus hydrogenalis DSM 7454 RepID=B6W6K6_9FIRM Length = 426 Score = 70.8 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 44/129 (34%), Gaps = 6/129 (4%) Query: 11 ECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL 70 + + LY D+ E D+ Y + + GV N YL+ ++ Sbjct: 5 KLILDGLYRICYKNEKSTDIINDIAREVS----DISYITKNIYGVLENKLYLEYIIGKLS 60 Query: 71 SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 +++L + +L I +Y + +NE + L K S FVN VL Sbjct: 61 KIKIKKLDKKVLLILEIGIYNIHFLDR-KNYAIVNELVNLTKKVSY-KSKSFVNAVLRSY 118 Query: 131 APVIRPNKK 139 K Sbjct: 119 IRDEENLSK 127 >UniRef50_Q14MH2 Hypothetical transcription factor involved in antitermination transcription regulator protein n=1 Tax=Spiroplasma citri RepID=Q14MH2_SPICI Length = 126 Score = 69.6 bits (170), Expect = 3e-11, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 54/129 (41%), Gaps = 5/129 (3%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 ++R+ R + LY + QND+ + + + V + + N + + Sbjct: 1 MSKRQERINIINLLYRHFVLQNDVLTTKQEAYDFSQMVTTSVE--TNQVEEILANLSDII 58 Query: 64 GLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 + +L L KAVL +YE+ + + INE++E+ K +G + Sbjct: 59 AKINQHLKPGWDFVRLSNYHKAVLVYGVYEICY-QHLAKAIVINESLEILKLYGEDVDFS 117 Query: 122 FVNGVLDKA 130 ++N VLD+ Sbjct: 118 YINSVLDQV 126 >UniRef50_Q8TGY2 tRNA/rRNA cytosine-C5-methylase n=1 Tax=Methanopyrus kandleri RepID=Q8TGY2_METKA Length = 431 Score = 69.6 bits (170), Expect = 3e-11, Method: Composition-based stats. Identities = 17/119 (14%), Positives = 40/119 (33%), Gaps = 4/119 (3%) Query: 20 WQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELG 78 + + + L + + + L + +D ++ L +E+L Sbjct: 1 MEERGHSLKAALRNALR--GIGGRRHRFVQALAHELVRVLGNVDLVLNRVLRGSTVEDLH 58 Query: 79 QVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPN 137 + LR+ +E+ R + P V +++ K +F N +L + V Sbjct: 59 PYLRNALRVGTWEIHWRREHPGPVT-KAVVDVVKERVGPKHARFANAILRQVERVNPEE 116 >UniRef50_D1J7Q8 N utilization substance protein B homolog(Protein nusB) n=1 Tax=Mycoplasma hominis ATCC 23114 RepID=D1J7Q8_MYCHP Length = 157 Score = 68.9 bits (168), Expect = 4e-11, Method: Composition-based stats. Identities = 23/141 (16%), Positives = 53/141 (37%), Gaps = 12/141 (8%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 + +AR + +Y +L +++ + L ++ L + Sbjct: 21 NKYKARMHIINCIYQSELFNKNLS--IQEILENCGENQLNANEIESL-KIIEAKYDVFTR 77 Query: 65 LMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + K ++ + + +A++ YEL +V INE + ++K + + +KF Sbjct: 78 IAKKFISEDWEWNRILPLSRAIIIYGEYELLFND---PRVVINEMVNISKIYSPNNDYKF 134 Query: 123 VNGVLD----KAAPVIRPNKK 139 +N VLD ++K Sbjct: 135 INKVLDLVSKNVIKKNTKDEK 155 >UniRef50_Q4FLU0 Antitermination protein NusB n=3 Tax=Candidatus Pelagibacter RepID=Q4FLU0_PELUB Length = 134 Score = 68.9 bits (168), Expect = 5e-11, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 54/128 (42%), Gaps = 11/128 (8%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R +Q LY + + + ++++ G + +K Y Sbjct: 12 RVIIIQKLYGNFFNDDTDLTFPKHRF---------KKFIKDVVLGTIERDEVIKEEVKKY 62 Query: 70 LSRLLE--ELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 LS LE L QV + +++ A++E + V K+ I E ++ + F + K++N +L Sbjct: 63 LSEDLELTNLDQVFQVIVKSAIFEFLYKPKVSSKIIIKEYLDASNFFLEDGQTKYLNAIL 122 Query: 128 DKAAPVIR 135 DK A IR Sbjct: 123 DKIAKKIR 130 >UniRef50_B1AIT8 Transcription antitermination factor NusB n=15 Tax=Ureaplasma RepID=B1AIT8_UREP2 Length = 127 Score = 68.1 bits (166), Expect = 9e-11, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 55/124 (44%), Gaps = 7/124 (5%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R Q +Y W +++ + L + D+ D+ + + + N L ++KP Sbjct: 8 RVKLFQFIYHWLITKKNKPIALKCALVDFDL---DLNWI-NVGEYILDNYEQLTKMIKPL 63 Query: 70 L--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 + E L VE+A+L A E P K+ I++ + ++ +S+KF+N +L Sbjct: 64 ISKDWTFERLSYVEQALLLSAYGEYLVL-KTPKKIIIDQTLITTHNYSNNESYKFINAIL 122 Query: 128 DKAA 131 D+ Sbjct: 123 DQLL 126 >UniRef50_Q4A684 Putative uncharacterized protein n=1 Tax=Mycoplasma synoviae 53 RepID=Q4A684_MYCS5 Length = 156 Score = 68.1 bits (166), Expect = 9e-11, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 54/153 (35%), Gaps = 24/153 (15%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 KP +R+ R +Q LY +L + + +D +E + V N Y Sbjct: 5 KPKTQRQKRIEKIQILYQVEL----LNLQKDFDFVLNMEPYLDAKQTKE-VFVVLKNYDY 59 Query: 62 LDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG---- 115 ++ L + L + +A+L A E + ++ INEA+E+ K F Sbjct: 60 FKNFLESLLDPSWNWQRLSYMLRAILLNACAEFEF---IDARIVINEAVEITKIFFQLTS 116 Query: 116 ----------AEDSHKFVNGVLDKAAPVIRPNK 138 + KF N +L+ + Sbjct: 117 DTSAKEYNSIDYNLFKFTNALLETYYKTKVKIE 149 >UniRef50_A5IYQ6 Transcription termination factor (NusB) n=2 Tax=Mycoplasma RepID=A5IYQ6_MYCAP Length = 139 Score = 67.3 bits (164), Expect = 1e-10, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 14/136 (10%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK +RR R + LY ++L + D D+D F++L ++ N Sbjct: 1 MK--SRREYRLGVINVLYKYEL----LEAKLLPSQIFSDESDIDNEQFKQL-ELISLNYD 53 Query: 61 YLDGLMKPYLSR--LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 Y + +L++ +L + +A+L A +EL + K+ INEA+E+ KSF ++ Sbjct: 54 YYQKTILKFLNQNTAWTKLPALIRAILLNATHELL---SISPKIVINEAVEITKSFYEQE 110 Query: 119 S--HKFVNGVLDKAAP 132 + +K VN +L Sbjct: 111 ANFYKLVNALLQNIYK 126 >UniRef50_B9GXX5 Predicted protein n=2 Tax=Spermatophyta RepID=B9GXX5_POPTR Length = 218 Score = 66.9 bits (163), Expect = 2e-10, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 52/122 (42%), Gaps = 7/122 (5%) Query: 19 SWQLSQNDIADVEYQFLAEQD---VKDVDVLYFRELLAGVATNTAYLDGLMKPYL--SRL 73 QLS + +E + L+ + + + R+LL V ++ + Sbjct: 81 ELQLSDEKESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDSHVLVIDKVSPPNWK 140 Query: 74 LEELGQVEK-AVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAP 132 E G++ + +L +A+ E++ +++ INEA++LAK F + +NG L Sbjct: 141 NEPAGRILEFCILHMAMSEITVL-GTRHQIVINEAVDLAKRFCDGAGPRIINGCLRTFLK 199 Query: 133 VI 134 + Sbjct: 200 DL 201 >UniRef50_D0GJC1 Putative ribosomal RNA small subunit methyltransferase B n=1 Tax=Leptotrichia goodfellowii F0264 RepID=D0GJC1_9FUSO Length = 442 Score = 66.2 bits (161), Expect = 3e-10, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 45/124 (36%), Gaps = 6/124 (4%) Query: 14 VQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL 73 V L +S + ++ + L+ ++ N Y+D L++ + Sbjct: 19 VNLLDEI-MSGKYSNIQLNHYFKTKNYLKKEKLFITNIINITIKNLIYIDYLLEKTVKN- 76 Query: 74 LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPV 133 + K +LRI++ +L ++ + EA+E+AK S FVN L Sbjct: 77 --IQKRKIKQLLRISVAQL-FFTEADNAGVLYEAVEVAKIINNHQS-GFVNATLQSVLRN 132 Query: 134 IRPN 137 Sbjct: 133 KDEI 136 >UniRef50_D1H5W4 Whole genome shotgun sequence of line PN40024, scaffold_4.assembly12x (Fragment) n=7 Tax=Magnoliophyta RepID=D1H5W4_VITVI Length = 218 Score = 66.2 bits (161), Expect = 3e-10, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 51/123 (41%), Gaps = 7/123 (5%) Query: 19 SWQLSQNDIADVEYQFLAEQD---VKDVDVLYFRELLAGVATNTAYLDGLMKPYL--SRL 73 + + +E + L+ + + + R+LL V ++ + Sbjct: 81 ELLRNNEKESAIEAEVLSAPPKLVYGKLILRFTRKLLVAVVDKWNSHVLVIDKVAPPNWK 140 Query: 74 LEELGQV-EKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAP 132 E G++ E +L +A+ E++ +++ INEA++LAK F + + +NG L Sbjct: 141 NEPAGRILELCILHLAMSEIAVL-GTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVK 199 Query: 133 VIR 135 + Sbjct: 200 DLE 202 >UniRef50_C5J681 Putative uncharacterized protein MCJ_002820 n=1 Tax=Mycoplasma conjunctivae HRC/581 RepID=C5J681_MYCCR Length = 133 Score = 66.2 bits (161), Expect = 3e-10, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 56/131 (42%), Gaps = 12/131 (9%) Query: 12 CAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLS 71 + LY +L + I V F ++ + F+ + N + L L+ +L+ Sbjct: 2 AVISLLYQSELLEEQIN-VGQIFQDHPELDSEQIKMFKFIA----KNYSLLQKLIAAHLN 56 Query: 72 --RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG--AEDSHKFVNGVL 127 E + + +A+L + EL +++ INE IE++K F + + F+N V+ Sbjct: 57 SQWQWERILPLNRAILLYGISELFFSE---HRIVINEMIEISKEFTADGDKDYGFINAVI 113 Query: 128 DKAAPVIRPNK 138 + ++ K Sbjct: 114 ENVYQYLKRKK 124 >UniRef50_A1B5L0 Fmu (Sun) domain protein n=30 Tax=Alphaproteobacteria RepID=A1B5L0_PARDP Length = 535 Score = 65.8 bits (160), Expect = 4e-10, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 47/129 (36%), Gaps = 10/129 (7%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 AR AR A++ L + + + + V +D Sbjct: 121 ARDGARSGALRLLAAVD-DGATLDEAGALTDRLAPAERARARRLA---LEVLRRADRVDL 176 Query: 65 LMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKS--FGAEDSHKF 122 L+ P L+R +LR+A E+ + P A+N A+ LA++ + + Sbjct: 177 LLAPMLARRPR---PEIMRILRLAAVEMLALGEAP-HGAVNAAVALARASGRKGQAAAGM 232 Query: 123 VNGVLDKAA 131 VN VL K A Sbjct: 233 VNAVLRKIA 241 >UniRef50_UPI00003837A7 COG0144: tRNA and rRNA cytosine-C5-methylases n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI00003837A7 Length = 188 Score = 64.6 bits (157), Expect = 1e-09, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 45/136 (33%), Gaps = 4/136 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 AAR ARE L + + D Q + D R + ++ Sbjct: 21 AARHVAREAVATLLGAA--RGLALEDALAQAGRGVGLAPADAALARAIATASFRRLGFIR 78 Query: 64 GLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKS-FGAEDSHKF 122 + L L + A+L ++ + V A++ ++ LAK+ + Sbjct: 79 AALAARLRDGLPDDRPHLLALLVTGAAQILDLA-VADHAAVDLSVRLAKADPQLQHLAPL 137 Query: 123 VNGVLDKAAPVIRPNK 138 VN VL + A + Sbjct: 138 VNAVLRRIARERDAIR 153 >UniRef50_B3PM53 Transcription termination factor n=1 Tax=Mycoplasma arthritidis 158L3-1 RepID=B3PM53_MYCA5 Length = 148 Score = 64.3 bits (156), Expect = 1e-09, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 51/132 (38%), Gaps = 14/132 (10%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 + R + +Y +L + I D+ ++ + + L Sbjct: 19 KKYNERVKLITFIYQSELFEEKID--VNYLFEHFDLSKRELDSLT-----IISEKYDLFQ 71 Query: 65 LMKPYL---SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS-H 120 + + + + +A++ ++EL S KV INE + +AKSF +DS + Sbjct: 72 SIAKRSILEQWTWQRIQPLARAIIIYGIFELFFNS---PKVVINEMVNIAKSFIPDDSTY 128 Query: 121 KFVNGVLDKAAP 132 KFVN LD A Sbjct: 129 KFVNRTLDMIAK 140 >UniRef50_A9NFG4 Transcription antitermination factor n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NFG4_ACHLI Length = 126 Score = 63.5 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 5/91 (5%) Query: 49 RELLAGVATNTAYLDGLMKPYLSR-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEA 107 +E++ G+ ++D L+ + ++ L V+ A++R+A+Y L K D P ++ INEA Sbjct: 37 KEVINGMIDELEHVDFLISSTIKNYTIDRLNLVDLAIIRVAVYALLKEID-PAEIVINEA 95 Query: 108 IELAKSFG---AEDSHKFVNGVLDKAAPVIR 135 IEL+K + E HKF N ++D I+ Sbjct: 96 IELSKEYTDLDDEKQHKFNNSLIDNIYKKIK 126 >UniRef50_A6DSU1 tRNA and rRNA cytosine-C5-methylase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DSU1_9BACT Length = 407 Score = 63.1 bits (153), Expect = 2e-09, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 46/139 (33%), Gaps = 5/139 (3%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK + A Q L +W S N D+E L + D+ +L V Sbjct: 1 MKDNKTFKTLSLATQVLKNWTQSHNF--DLELNRLRRSGNHESDLKRASQLCLCVFRKKE 58 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 L+ ++K + +L ++ + + + + A+E AK ++ Sbjct: 59 SLEKIVKKLSQKRPRG---RVMHLLLPSMAAMLYMDKITPQGFADSAVEAAKKILSKHEA 115 Query: 121 KFVNGVLDKAAPVIRPNKK 139 F+N K + Sbjct: 116 NFLNSFFHKLVDQKENLLR 134 >UniRef50_Q8EWP3 Transcription termination factor N-utilization substance protein B n=1 Tax=Mycoplasma penetrans RepID=Q8EWP3_MYCPE Length = 149 Score = 63.1 bits (153), Expect = 3e-09, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 59/127 (46%), Gaps = 7/127 (5%) Query: 8 RARECAVQALYSWQLSQ-NDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLM 66 + R + +YS + D + ++KD D+ +++A N + + Sbjct: 25 KKRVACFRFIYSTLIMNLGDKDCILKFNEELAELKDKDIA---KVIAFYIKNKQNIKSRI 81 Query: 67 KPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 KP L ++ L +V+ +++ A E D+ K+ I++AI +K + +S+KF+N Sbjct: 82 KPLLKEEWEIDRLNKVDLSIIMEAFCEF-HTLDIDRKIIIDQAIVTSKRYSENNSYKFIN 140 Query: 125 GVLDKAA 131 +LDK Sbjct: 141 FILDKLL 147 >UniRef50_D1B789 Fmu (Sun) domain protein n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B789_THEAS Length = 430 Score = 62.7 bits (152), Expect = 3e-09, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 39/115 (33%), Gaps = 8/115 (6%) Query: 23 SQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEK 82 ++ + + + D L+ G + +++ L R +EL V + Sbjct: 9 KGAFASEALR--IVSEGMSPEDRRLASLLVYGALRRRSLWRNMVERRLKRPFKELKPVTR 66 Query: 83 AVLRIALY---ELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVI 134 L I EL P +++ + K+ GAED + VL + Sbjct: 67 DGLIIGAAALMELRNFRPGPLYGGLSQCL---KAEGAEDQVPILVAVLKRIEREG 118 >UniRef50_C0ADS6 Fmu (Sun) domain protein (Fragment) n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0ADS6_9BACT Length = 201 Score = 62.3 bits (151), Expect = 4e-09, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 50/135 (37%), Gaps = 16/135 (11%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 A A + L W + + + A ++ + L+ G + ++G++ P Sbjct: 17 AWLAAARLLVRWLDERARVDGLLAVLPA--NLGRTGRARCQNLVLGALRHLGRIEGIITP 74 Query: 69 YLSRLLEELGQVEKAVLRIALYELS------KRSDVPYKVAINEAIELAKSFGAEDSHKF 122 +SR +AV +A YEL + V + A+E K ++ + Sbjct: 75 LMSR---MPRAEVQAVFLLAGYELIEGGGDGHVAKVAHH-----AVEQTKRLASQAEARM 126 Query: 123 VNGVLDKAAPVIRPN 137 VN ++ K A + Sbjct: 127 VNAIVRKLASALADE 141 >UniRef50_B4RCX9 rRNA methyltransferase RsmB n=8 Tax=Alphaproteobacteria RepID=B4RCX9_PHEZH Length = 598 Score = 61.6 bits (149), Expect = 7e-09, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 7/78 (8%) Query: 58 NTAYLDGLMKPYLSRLL-EELGQVEKAVLRIALYELSKRSDVPYKVAINEAIEL-AKSFG 115 + +D ++ L + + + QV LR+ +L P A++ ++L A G Sbjct: 231 HLGPIDAALQARLRKPPPDRIVQV----LRLGAAQLLVL-KTPAHAAVSATVDLAASQKG 285 Query: 116 AEDSHKFVNGVLDKAAPV 133 + VN VL + Sbjct: 286 GQAFKGLVNAVLRGLSRE 303 >UniRef50_Q3YSG7 Putative uncharacterized protein n=1 Tax=Ehrlichia canis str. Jake RepID=Q3YSG7_EHRCJ Length = 148 Score = 61.6 bits (149), Expect = 8e-09, Method: Composition-based stats. Identities = 17/119 (14%), Positives = 48/119 (40%), Gaps = 9/119 (7%) Query: 20 WQLSQNDIADV------EYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL--S 71 + I D+ Y+ D+ +D +++ + ++ + +L Sbjct: 1 MIFNNYTINDIDNLIDYLYEMKEVLDLIQIDNQLLIKIMNTMLLTFNTINSTIATFLNEK 60 Query: 72 RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 ++ + + ++++ A+ EL S+ + INE + +A + F+N +L++ Sbjct: 61 WSIDRINLISLSIIKTAVCELI-CSNTDAVIIINEYVNIASHILEKTEVNFINAILNQV 118 >UniRef50_A4T0M4 Sun protein n=2 Tax=Polynucleobacter necessarius RepID=A4T0M4_POLSQ Length = 438 Score = 59.2 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 45/131 (34%), Gaps = 17/131 (12%) Query: 12 CAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLS 71 A QA+ +S + +V + + + + L L+K ++ Sbjct: 18 IAAQAISEV-MSGRSLTEVLDE------LDAHERPIVQSLTFDALRKWVRSHELIKQFV- 69 Query: 72 RLLEELGQVEKAVLRIALYELSKRSDVPY-----KVAINEAIELAKSFG-AEDSHKFVNG 125 + +L +A+ L R+D +++A+ + + VN Sbjct: 70 --PKTPPPEVDHLLSVAIA-LFIRNDADDKGYAVHTVVDQAVRACGEYDQTLYAKGLVNA 126 Query: 126 VLDKAAPVIRP 136 VL K + ++P Sbjct: 127 VLRKVSLALQP 137 >UniRef50_C0B8Y2 Putative uncharacterized protein n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0B8Y2_9FIRM Length = 77 Score = 57.3 bits (138), Expect = 2e-07, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 2/68 (2%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNTAYLDGLMKP 68 RE A+ L + V Q L + + D + L G LD ++ Sbjct: 11 RELALMILLEIE-RGEKSHIVLRQVLEKYQYLSKQDRAFLTRLAEGTTERRIELDYIINQ 69 Query: 69 YLSRLLEE 76 + E+ Sbjct: 70 FSKVKTEK 77 >UniRef50_Q98R41 Putative uncharacterized protein MYPU_1690 n=1 Tax=Mycoplasma pulmonis RepID=Q98R41_MYCPU Length = 160 Score = 56.2 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 59/131 (45%), Gaps = 11/131 (8%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 +R +R + +Y W LS++++ + +++ ++L + N + L Sbjct: 20 KRLSRFLMICEIYKWYLSESNLDINDDFVNQAFSLEE------NKVLKLILKNKTKFENL 73 Query: 66 MKPYLSR---LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF-GAEDSHK 121 + +L E++ + KA++ ++ D+ V I+EA+E++K + Sbjct: 74 ISKFLKSNSLKWEQILPLIKAIILFFSVQI-SLQDLDGPVLISEALEISKDLIYEKKEVA 132 Query: 122 FVNGVLDKAAP 132 F+N +LDK + Sbjct: 133 FINAILDKISK 143 >UniRef50_C8WDB8 Fmu (Sun) domain protein n=3 Tax=Zymomonas mobilis RepID=C8WDB8_ZYMMN Length = 468 Score = 56.2 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 47/139 (33%), Gaps = 14/139 (10%) Query: 2 KPAARRRA-------RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAG 54 +P R+ A R+ A+Q L + + V + ++ D L A Sbjct: 34 RPPQRKNAQPIGLPVRKAALQLLEAVLRQGLPLEQVIGRITQGLK-QNADRALVHALAAA 92 Query: 55 VATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 V LD L+ ++ L + VLR+AL + P VAI + L Sbjct: 93 VLRWCHDLDQLIDSATAKPLAP-DVKARMVLRMALAQKLVL-KQPAHVAIATVLPLV--- 147 Query: 115 GAEDSHKFVNGVLDKAAPV 133 + V+GV Sbjct: 148 -DGGPRRLVHGVYGSLDRR 165 >UniRef50_UPI000169938E Sun protein n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI000169938E Length = 104 Score = 55.8 bits (134), Expect = 4e-07, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 6/105 (5%) Query: 1 MKPAARRRA---RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVAT 57 M R+ A R A + L ++D+ + L D D +EL GV Sbjct: 3 MLATQRKSAADPRLIAARVLRDVL-KGRSLSDLLPERLNGLD-DPRDRALAQELCYGVMR 60 Query: 58 NTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKV 102 L L+ L + L+ Q +A++ I LY+LS+ V Sbjct: 61 GYPRLQALVGLLLKKPLKAKDQDLQALILIGLYQLSEM-RVAAHA 104 >UniRef50_Q5P4P8 tRNA and rRNA cytosine-C5-methylases sun n=8 Tax=Betaproteobacteria RepID=Q5P4P8_AZOSE Length = 447 Score = 55.0 bits (132), Expect = 7e-07, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 39/121 (32%), Gaps = 6/121 (4%) Query: 17 LYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLE 75 L L ++ + + L D R+L G + D +++ L + L Sbjct: 38 LVETVLGGANLTEAYERLLRANPGWPDATRGAVRDLAWGTLRDYGRGDVVLRRLLHKPLP 97 Query: 76 ELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIR 135 V L R D +++A++ A + A VNGVL K Sbjct: 98 VALHALLLVALH---RLEHRPD-QAHTVVDQAVDAA-AVLAPGLKGVVNGVLRKRLRDEH 152 Query: 136 P 136 Sbjct: 153 E 153 >UniRef50_Q2NJE9 N utilization substance protein B n=4 Tax=Candidatus Phytoplasma RepID=Q2NJE9_AYWBP Length = 138 Score = 55.0 bits (132), Expect = 8e-07, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 67/137 (48%), Gaps = 16/137 (11%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLM 66 R R ++ LY + QN++ + + +F+++ T ++D ++ Sbjct: 11 RLLRIELMKLLYQYDFYQNNLTLSQTNT-------NPIFTFFQKI----ITKLKFIDEII 59 Query: 67 KPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG---AEDSHKF 122 L + L +V++A++R+A YEL +++ + + I+EAIE+ K F E HKF Sbjct: 60 TKSLYDYKINRLNKVDRAIIRLATYELL-ETNISHAIIIDEAIEITKQFCNLNDEKQHKF 118 Query: 123 VNGVLDKAAPVIRPNKK 139 N +LD+ ++ KK Sbjct: 119 NNKLLDQIYRQLQMYKK 135 >UniRef50_Q7NAX6 Putative uncharacterized protein n=1 Tax=Mycoplasma gallisepticum RepID=Q7NAX6_MYCGA Length = 132 Score = 52.7 bits (126), Expect = 4e-06, Method: Composition-based stats. Identities = 22/137 (16%), Positives = 52/137 (37%), Gaps = 13/137 (9%) Query: 1 MKPA----ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVA 56 MK ++ + R + +Y L ++ ++ +D+ D + G+ Sbjct: 3 MKKQANQRSQYQIRYDRLTFIYQALLLDLNLDEIYQAISQLEDL--KDQEFLTN-WTGLI 59 Query: 57 TNTAYLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 + + +L L + KA+ + + E + I++A +L + + Sbjct: 60 NQVPTI---VSAHLKESWSWNRLDYMIKALFNLVITEAKVL-KTEKAILISQATKLIQEY 115 Query: 115 GAEDSHKFVNGVLDKAA 131 G +S K V+ +L+K Sbjct: 116 GDLNSIKLVSAILNKVI 132 >UniRef50_A5B766 Putative uncharacterized protein n=1 Tax=Vitis vinifera RepID=A5B766_VITVI Length = 360 Score = 51.9 bits (124), Expect = 7e-06, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 42/125 (33%), Gaps = 35/125 (28%) Query: 45 VLYFRELLAGVATNTAYLDGLMKPYL--SRLLEELGQV-EKAVLRIALYELSKRSDVPYK 101 + R+LL V ++ + E G++ E +L +A+ E++ ++ Sbjct: 221 RSFTRKLLVAVVDKWNSHVLVIDKVAPPNWKNEPAGRILELCILHLAMSEIAVL-GTRHQ 279 Query: 102 VAINE-------------------------------AIELAKSFGAEDSHKFVNGVLDKA 130 + INE A++LAK F + + +NG L Sbjct: 280 IVINEVNSFSFSLSFSHDLPVKCISTSLTLIWLLMKAVDLAKRFCDGAAPRIINGCLRTF 339 Query: 131 APVIR 135 + Sbjct: 340 VKDLE 344 >UniRef50_Q2T2A8 Sun protein n=76 Tax=Proteobacteria RepID=Q2T2A8_BURTA Length = 571 Score = 49.6 bits (118), Expect = 3e-05, Method: Composition-based stats. Identities = 12/94 (12%), Positives = 29/94 (30%), Gaps = 9/94 (9%) Query: 45 VLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKV-- 102 +++ D L+ +++ A+L A L + Sbjct: 172 RGAIQDIAYRAMRRRGTADWLIAQLVAKAP---PAHVHALLVCAFALLVDDDEHAAYAPF 228 Query: 103 -AINEAIEL--AKSFGAEDSHKFVNGVLDKAAPV 133 +++A+ A+ + + VN VL + Sbjct: 229 TVVDQAVTAIGARRECS-FAKGLVNAVLRRFLRE 261 >UniRef50_C6NTF2 Ribosomal RNA small subunit methyltransferase B n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NTF2_9GAMM Length = 443 Score = 45.4 bits (107), Expect = 6e-04, Method: Composition-based stats. Identities = 7/41 (17%), Positives = 15/41 (36%) Query: 99 PYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 P +N+ + E + VN +L + P ++ Sbjct: 91 PDFAVVNDWVGACALLHKEWARGLVNALLRRYLREREPLEE 131 >UniRef50_C5CKF6 Sun protein n=5 Tax=Betaproteobacteria RepID=C5CKF6_VARPS Length = 442 Score = 43.5 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 15/100 (15%), Positives = 29/100 (29%), Gaps = 2/100 (2%) Query: 38 QDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSD 97 + V+ + L V + L + R L ++ Sbjct: 30 EAVEPAMRPGVQALGFQVLRWLGRAEALRRHLAKRTPPPLPDALLCTALALAWDAQHAPY 89 Query: 98 VPYKVAINEAIELAKSFGAEDS-HKFVNGVLDKAAPVIRP 136 P +++A+E AK A + F+N L + Sbjct: 90 EP-FTLVDQAVEAAKRNPATRAQASFINACLRRFLRERDE 128 >UniRef50_B6IQ69 tRNA and rRNA cytosine-C5-methylase, putative n=1 Tax=Rhodospirillum centenum SW RepID=B6IQ69_RHOCS Length = 456 Score = 42.7 bits (100), Expect = 0.004, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 29/87 (33%), Gaps = 10/87 (11%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNT 59 M PAAR +A A+ L + + + QF + + D L+ V + Sbjct: 1 MTPAARIQA---AIDLLSEIEATPRPADALVSQFFRNRRYIGAKDRQGVAGLVYSVLRHR 57 Query: 60 AYLDGLMKPYLSRLLEELGQVEKAVLR 86 L + + +A+L Sbjct: 58 GRLGWWLDRC------NVMPTPRALLL 78 >UniRef50_D0KW91 Fmu (Sun) domain protein n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KW91_HALNC Length = 430 Score = 42.3 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 18/58 (31%), Gaps = 1/58 (1%) Query: 11 ECAVQALYSWQLSQNDIADVEYQ-FLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 + A L F AE+ + D + L+ V + LD L+ Sbjct: 24 QRAAAVLDVILSDGVPSDRALQHCFRAERQMGKRDRAQLQTLVFFVLRHWRLLDELLG 81 >UniRef50_D0ME27 Fmu (Sun) domain protein n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0ME27_RHOM4 Length = 434 Score = 41.9 bits (98), Expect = 0.007, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 1/50 (2%) Query: 11 ECAVQALYSWQLSQNDIADVEYQFLA-EQDVKDVDVLYFRELLAGVATNT 59 E V L S V QF + + D + E + G+ + Sbjct: 16 EAVVTVLREILRSPLPADTVLQQFFRKHRKMGKRDRAFVAETVYGMLRHY 65 >UniRef50_A1WK57 Sun protein n=17 Tax=cellular organisms RepID=A1WK57_VEREI Length = 470 Score = 41.5 bits (97), Expect = 0.008, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 37/127 (29%), Gaps = 12/127 (9%) Query: 13 AVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSR 72 AV S V A+ + LL V + L + +R Sbjct: 37 AVAVALQAIRSGQSGTAVLAAVDADL------RPGVQALLFQVLRQAGRAELLRRQLAAR 90 Query: 73 LLEELGQVEKAVLRIALYELSKRSDVP--YKVAINEAIELAKSFGAED-SHKFVNGVLDK 129 A+L +AL D P +N+A+E AK A F+N L + Sbjct: 91 TP---PPAVDALLCVALALCWNPEDAPYAPFTLVNQAVEAAKHSAAARAQSAFINACLRR 147 Query: 130 AAPVIRP 136 Sbjct: 148 FLREREA 154 >UniRef50_C5KW57 Putative uncharacterized protein (Fragment) n=3 Tax=Perkinsus marinus ATCC 50983 RepID=C5KW57_9ALVE Length = 294 Score = 41.1 bits (96), Expect = 0.010, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%) Query: 88 ALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAP 132 A +EL +P V INEA LAK F S V+ +++ Sbjct: 2 AAFELLNHQHIPTTVVINEANSLAKEFC-PRSQTLVHASVNRMIE 45 >UniRef50_UPI000196CC25 hypothetical protein CATMIT_02482 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196CC25 Length = 80 Score = 41.1 bits (96), Expect = 0.012, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 2/74 (2%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKD--VDVLYFRELLAGVATN 58 M+ R+ ARE AV A+Y W +++ A++ + + + L+ V N Sbjct: 1 MEKTIRQIAREKAVIAVYQWLTVDASKEELKEYVHADEALIEGRSAEQFCYWLIDTVMEN 60 Query: 59 TAYLDGLMKPYLSR 72 + L+ L + Sbjct: 61 KGSYEALLNTKLKK 74 >UniRef50_Q8TH02 tRNA/rRNA cytosine-C5-methylase n=1 Tax=Methanopyrus kandleri RepID=Q8TH02_METKA Length = 444 Score = 40.8 bits (95), Expect = 0.015, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 36/115 (31%), Gaps = 3/115 (2%) Query: 14 VQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYF-RELLAGVATNTAYLDGLMKPYLS- 71 + L S + + Y+ L L + + ++ + Sbjct: 11 ARILAEHYRSGVSLKESFYRALDNPFSIPSHRARAIHRRLMELGKRLGLCEEILDDVIQS 70 Query: 72 RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGV 126 E+LG K VL A E+ + + A +AK ++ FV+ V Sbjct: 71 GSFEDLGPELKGVLVTAADEMLF-EGTSPALVTDAATRVAKELVSDRVADFVHAV 124 >UniRef50_Q2RXU7 tRNA/rRNA cytosine-C5-methylase n=8 Tax=Alphaproteobacteria RepID=Q2RXU7_RHORT Length = 454 Score = 39.6 bits (92), Expect = 0.031, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 29/88 (32%), Gaps = 5/88 (5%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNT 59 M PAAR + CA+ L + + F+ + + D L + Sbjct: 1 MTPAARVQ---CAIDLLVDIDATNRPADGIASAFVRARRFMGSKDRRAVTALAWSTLRHR 57 Query: 60 AYLDGLMKPYLSRLLEELGQVEKAVLRI 87 A L L+ + + V +L + Sbjct: 58 ARLSWLIDRF-GGTPKARALVIAHLLVV 84 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.313 0.183 0.528 Lambda K H 0.267 0.0557 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,271,740,051 Number of Sequences: 3077464 Number of extensions: 69272117 Number of successful extensions: 205769 Number of sequences better than 1.0e-01: 678 Number of HSP's better than 0.1 without gapping: 1857 Number of HSP's successfully gapped in prelim test: 168 Number of HSP's that attempted gapping in prelim test: 200660 Number of HSP's gapped (non-prelim): 2231 length of query: 139 length of database: 1,040,396,356 effective HSP length: 103 effective length of query: 36 effective length of database: 723,417,564 effective search space: 26043032304 effective search space used: 26043032304 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.0 bits) S2: 88 (38.1 bits)