BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (139 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_A7ZIG9 N utilization substance protein B homolog n=118 ... 281 3e-75 UniRef50_B8D9P0 N utilization substance protein B homolog n=5 Ta... 180 1e-44 UniRef50_Q493G9 N utilization substance protein B homolog n=3 Ta... 176 3e-43 UniRef50_A5F5Z6 N utilization substance protein B homolog n=91 T... 161 7e-39 UniRef50_Q48DC2 N utilization substance protein B homolog n=51 T... 148 4e-35 UniRef50_B0UU23 N utilization substance protein B homolog n=33 T... 147 1e-34 UniRef50_Q1IFL9 N utilization substance protein B homolog n=12 T... 144 9e-34 UniRef50_Q21F20 N utilization substance protein B homolog n=5 Ta... 142 3e-33 UniRef50_A4VHT5 N utilization substance protein B homolog n=23 T... 140 1e-32 UniRef50_Q2BM00 NusB protein n=1 Tax=Neptuniibacter caesariensis... 139 3e-32 UniRef50_C5BS84 N utilization substance protein B homolog n=2 Ta... 138 5e-32 UniRef50_A6W2L6 N utilization substance protein B homolog n=4 Ta... 137 1e-31 UniRef50_A7C6S2 Transcription antitermination protein NusB n=1 T... 132 3e-30 UniRef50_Q31FT2 N utilization substance protein B homolog n=1 Ta... 128 4e-29 UniRef50_Q3JCY0 N utilization substance protein B homolog n=2 Ta... 128 5e-29 UniRef50_Q1N2N9 Transcription antitermination protein NusB n=1 T... 125 3e-28 UniRef50_A8PLC7 Transcription antitermination factor NusB n=1 Ta... 124 1e-27 UniRef50_Q3BXH9 N utilization substance protein B homolog n=20 T... 122 3e-27 UniRef50_B6IZ82 N utilization substance protein B homolog n=6 Ta... 120 2e-26 UniRef50_C4KD91 NusB antitermination factor n=1 Tax=Thauera sp. ... 118 5e-26 UniRef50_Q0K7T8 N utilization substance protein B homolog n=70 T... 117 9e-26 UniRef50_A1WVG0 N utilization substance protein B homolog n=1 Ta... 117 9e-26 UniRef50_Q057F3 N utilization substance protein B homolog n=1 Ta... 114 1e-24 UniRef50_C1DB31 N utilization substance protein B homolog n=3 Ta... 111 6e-24 UniRef50_A1W9I4 N utilization substance protein B homolog n=6 Ta... 110 2e-23 UniRef50_B5ELV9 NusB antitermination factor n=3 Tax=Acidithiobac... 109 3e-23 UniRef50_Q5X720 N utilization substance protein B homolog n=6 Ta... 109 3e-23 UniRef50_C7HWX1 NusB antitermination factor n=1 Tax=Thiomonas in... 109 4e-23 UniRef50_D0L1W4 NusB antitermination factor n=1 Tax=Halothiobaci... 108 4e-23 UniRef50_Q1H424 N utilization substance protein B homolog n=2 Ta... 107 8e-23 UniRef50_C6WU13 NusB antitermination factor n=1 Tax=Methylotener... 107 9e-23 UniRef50_Q0AD60 N utilization substance protein B homolog n=3 Ta... 106 2e-22 UniRef50_Q5F9Y0 N utilization substance protein B homolog n=22 T... 106 2e-22 UniRef50_Q2YD50 N utilization substance protein B homolog n=4 Ta... 105 4e-22 UniRef50_Q479L3 N utilization substance protein B homolog n=3 Ta... 105 5e-22 UniRef50_B5JUN2 Transcription antitermination factor NusB n=1 Ta... 104 1e-21 UniRef50_A5CWS4 N utilization substance protein B n=2 Tax=sulfur... 103 2e-21 UniRef50_D1KDZ6 Transcription termination factor n=1 Tax=uncultu... 103 2e-21 UniRef50_C5TIT6 Transcription antitermination factor NusB n=5 Ta... 102 3e-21 UniRef50_Q5P3H4 N utilization substance protein B homolog n=9 Ta... 102 4e-21 UniRef50_Q0ABQ3 N utilization substance protein B homolog n=2 Ta... 101 7e-21 UniRef50_A9BVN7 N utilization substance protein B homolog n=7 Ta... 100 1e-20 UniRef50_Q607V0 N utilization substance protein B homolog n=1 Ta... 100 2e-20 UniRef50_A5EVR1 Transcription antitermination factor NusB n=2 Ta... 99 3e-20 UniRef50_UPI0000E87F00 transcription antitermination protein Nus... 98 1e-19 UniRef50_C6X9V7 NusB antitermination factor n=1 Tax=Methylovorus... 97 2e-19 UniRef50_C6CU26 NusB antitermination factor n=3 Tax=Bacillales R... 97 2e-19 UniRef50_C0N8C8 Transcription antitermination factor NusB n=1 Ta... 96 3e-19 UniRef50_Q0F2C5 Transcription antitermination protein NusB n=1 T... 95 6e-19 UniRef50_UPI00006A2BCA UPI00006A2BCA related cluster n=1 Tax=Xen... 95 7e-19 UniRef50_A0L3Z8 NusB antitermination factor n=1 Tax=Magnetococcu... 93 2e-18 UniRef50_Q30YL1 N utilization substance protein B homolog n=5 Ta... 93 3e-18 UniRef50_Q1D350 N utilization substance protein B homolog n=2 Ta... 93 3e-18 UniRef50_A5FQ51 N utilization substance protein B homolog n=5 Ta... 92 7e-18 UniRef50_UPI0001699525 transcription antitermination protein Nus... 91 8e-18 UniRef50_C0GE32 NusB antitermination factor n=1 Tax=Dethiobacter... 90 2e-17 UniRef50_C8PUW0 NusB antitermination factor n=1 Tax=Enhydrobacte... 89 4e-17 UniRef50_C0GMV1 NusB antitermination factor n=1 Tax=Desulfonatro... 89 5e-17 UniRef50_C1I679 NusB antitermination factor n=1 Tax=Clostridium ... 88 7e-17 UniRef50_A3DDP0 N utilization substance protein B homolog n=5 Ta... 88 1e-16 UniRef50_A7HDY2 N utilization substance protein B homolog n=4 Ta... 87 1e-16 UniRef50_A0Q099 N utilization substance protein B homolog n=3 Ta... 86 3e-16 UniRef50_C5S6Y6 NusB antitermination factor n=1 Tax=Allochromati... 86 4e-16 UniRef50_A5WHT3 NusB antitermination factor n=1 Tax=Psychrobacte... 86 5e-16 UniRef50_A6LU43 N utilization substance protein B homolog n=6 Ta... 85 6e-16 UniRef50_C0ZC03 N utilization substance protein B n=1 Tax=Brevib... 85 9e-16 UniRef50_B6BUY9 Transcription antitermination factor NusB n=1 Ta... 85 9e-16 UniRef50_Q4FPZ1 N utilization substance protein B homolog n=19 T... 84 1e-15 UniRef50_UPI00019779AE transcription antitermination protein Nus... 84 1e-15 UniRef50_A8FF16 N utilization substance protein B homolog n=28 T... 82 5e-15 UniRef50_B8FQ61 N utilization substance protein B homolog n=2 Ta... 82 5e-15 UniRef50_A4XLC1 N utilization substance protein B homolog n=2 Ta... 82 5e-15 UniRef50_D1CCN3 NusB antitermination factor n=1 Tax=Thermobaculu... 82 5e-15 UniRef50_C8WXH1 NusB antitermination factor n=1 Tax=Alicyclobaci... 82 6e-15 UniRef50_C1QBG1 Transcription antitermination factor NusB n=1 Ta... 82 7e-15 UniRef50_Q2RIA9 N utilization substance protein B homolog n=1 Ta... 81 9e-15 UniRef50_B7DR17 NusB antitermination factor n=1 Tax=Alicyclobaci... 81 9e-15 UniRef50_B1LAQ8 N utilization substance protein B homolog n=10 T... 81 1e-14 UniRef50_A8ZTU6 N utilization substance protein B homolog n=1 Ta... 81 1e-14 UniRef50_B5YHQ2 N utilization substance protein B homolog n=1 Ta... 81 1e-14 UniRef50_D2LH50 NusB antitermination factor n=1 Tax=Rhodomicrobi... 81 1e-14 UniRef50_UPI0001C42A93 transcription antitermination protein Nus... 81 1e-14 UniRef50_C9R7W0 NusB antitermination factor n=1 Tax=Ammonifex de... 81 1e-14 UniRef50_Q3A4L2 N utilization substance protein B homolog n=2 Ta... 80 2e-14 UniRef50_B3U4H5 Transcription antitermination protein n=1 Tax=Ca... 80 2e-14 UniRef50_D1BMJ1 NusB antitermination factor n=3 Tax=Veillonella ... 80 2e-14 UniRef50_B6WQ80 Putative uncharacterized protein n=1 Tax=Desulfo... 80 2e-14 UniRef50_A5G3J8 N utilization substance protein B homolog n=7 Ta... 80 2e-14 UniRef50_B7IXH3 N utilization substance protein B homolog n=82 T... 80 2e-14 UniRef50_D2L8L5 NusB antitermination factor n=1 Tax=Desulfovibri... 80 3e-14 UniRef50_Q1PUX1 Putative uncharacterized protein n=1 Tax=Candida... 80 3e-14 UniRef50_B0TEI6 N utilization substance protein B homolog n=1 Ta... 80 3e-14 UniRef50_C6BYC6 NusB antitermination factor n=1 Tax=Desulfovibri... 79 4e-14 UniRef50_A6Q4Q9 N utilization substance protein B homolog n=20 T... 79 5e-14 UniRef50_B1H071 Transcription antitermination factor NusB n=1 Ta... 79 5e-14 UniRef50_A0LI21 N utilization substance protein B homolog n=4 Ta... 79 5e-14 UniRef50_Q1NRI6 NusB antitermination factor n=1 Tax=delta proteo... 79 5e-14 UniRef50_A4W3P3 Transcription termination factor n=6 Tax=Strepto... 79 6e-14 UniRef50_Q0TPD3 N utilization substance protein B homolog n=10 T... 78 9e-14 UniRef50_C0R001 Transcription antitermination protein NusB n=1 T... 78 9e-14 UniRef50_Q1MS16 N utilization substance protein B homolog n=1 Ta... 78 9e-14 UniRef50_C8PMR7 Transcription antitermination factor NusB n=1 Ta... 78 1e-13 UniRef50_A9ET18 N utilization substance protein B homolog n=1 Ta... 77 1e-13 UniRef50_B9L0C6 Transcription antitermination factor NusB n=2 Ta... 77 1e-13 UniRef50_B4D6X5 NusB antitermination factor n=1 Tax=Chthoniobact... 77 1e-13 UniRef50_A7NB00 Transcription antitermination factor n=19 Tax=Fr... 77 2e-13 UniRef50_B9L730 Transcription antitermination factor NusB n=2 Ta... 77 2e-13 UniRef50_C5RKK7 NusB antitermination factor n=1 Tax=Clostridium ... 77 2e-13 UniRef50_B8H535 N utilization substance protein B homolog n=4 Ta... 77 2e-13 UniRef50_C4L3F7 N utilization substance protein B homolog n=2 Ta... 76 3e-13 UniRef50_D2R650 NusB antitermination factor n=2 Tax=Planctomycet... 76 3e-13 UniRef50_Q04EK8 Transcription termination factor n=2 Tax=Oenococ... 76 3e-13 UniRef50_Q5WF59 N utilization substance protein B homolog n=2 Ta... 76 4e-13 UniRef50_D1VSJ6 Transcription antitermination factor NusB n=1 Ta... 76 4e-13 UniRef50_B8DJF1 N utilization substance protein B homolog n=2 Ta... 75 5e-13 UniRef50_Q5HW85 N utilization substance protein B homolog n=24 T... 75 5e-13 UniRef50_B4SCZ7 N utilization substance protein B homolog n=2 Ta... 75 5e-13 UniRef50_Q6MNX9 N utilization substance protein B homolog n=1 Ta... 75 5e-13 UniRef50_Q2YYB7 N utilization substance protein B homolog n=59 T... 75 6e-13 UniRef50_Q38XV0 N utilization substance protein B homolog n=9 Ta... 75 7e-13 UniRef50_B1N082 Transcription termination factor n=3 Tax=Leucono... 75 7e-13 UniRef50_C7LSH4 NusB antitermination factor n=1 Tax=Desulfomicro... 75 8e-13 UniRef50_A8MFJ3 N utilization substance protein B homolog n=2 Ta... 75 1e-12 UniRef50_A8VXB3 Acetyl-CoA carboxylase, biotin carboxyl carrier ... 74 1e-12 UniRef50_B3DWQ3 N utilization substance protein B homolog n=1 Ta... 74 1e-12 UniRef50_B3QV72 N utilization substance protein B homolog n=1 Ta... 74 1e-12 UniRef50_B2S4Q2 N utilization substance protein B homolog n=3 Ta... 74 1e-12 UniRef50_Q67NA9 N utilization substance protein B homolog n=2 Ta... 74 1e-12 UniRef50_D2RJI2 NusB antitermination factor n=2 Tax=Acidaminococ... 74 1e-12 UniRef50_B9E6Q9 N utilization substance protein B homolog n=6 Ta... 74 1e-12 UniRef50_B9E100 N utilization substance protein B homolog n=14 T... 74 2e-12 UniRef50_D1U9R7 NusB antitermination factor n=1 Tax=Desulfovibri... 74 2e-12 UniRef50_UPI00016C04B6 transcription termination factor n=1 Tax=... 73 2e-12 UniRef50_C6JJK8 N utilization substance protein B n=2 Tax=Fusoba... 73 3e-12 UniRef50_Q983A9 N utilization substance protein B homolog n=3 Ta... 72 4e-12 UniRef50_C5CI90 NusB antitermination factor n=1 Tax=Kosmotoga ol... 72 5e-12 UniRef50_UPI0001745093 NusB antitermination factor n=1 Tax=Verru... 72 6e-12 UniRef50_B0CL95 N utilization substance protein B homolog n=42 T... 72 6e-12 UniRef50_C7N4M1 Transcription antitermination factor NusB n=1 Ta... 72 8e-12 UniRef50_B1ZVQ6 NusB antitermination factor n=3 Tax=Verrucomicro... 71 9e-12 UniRef50_C3XHP1 Predicted protein n=1 Tax=Helicobacter bilis ATC... 71 1e-11 UniRef50_Q2LQK4 N utilization substance protein B homolog n=1 Ta... 71 1e-11 UniRef50_A4TBX3 N utilization substance protein B homolog n=18 T... 71 1e-11 UniRef50_Q03RR0 N utilization substance protein B homolog n=23 T... 71 1e-11 UniRef50_Q836W8 N utilization substance protein B homolog n=39 T... 70 2e-11 UniRef50_A5D319 N utilization substance protein B homolog n=3 Ta... 70 2e-11 UniRef50_Q3ATI5 N utilization substance protein B homolog n=9 Ta... 70 2e-11 UniRef50_C1A8F7 Antitermination protein NusB n=1 Tax=Gemmatimona... 70 2e-11 UniRef50_C8W0Z5 NusB antitermination factor n=1 Tax=Desulfotomac... 70 2e-11 UniRef50_B9LDT2 N utilization substance protein B homolog n=6 Ta... 70 2e-11 UniRef50_Q3AAM1 N utilization substance protein B homolog n=1 Ta... 69 3e-11 UniRef50_C3XMJ2 Transcription termination protein n=1 Tax=Helico... 69 6e-11 UniRef50_C5R7W5 Transcription antitermination protein NusB n=1 T... 69 6e-11 UniRef50_B8D2G0 N utilization substance protein B homolog n=1 Ta... 69 7e-11 UniRef50_A8SLT0 Putative uncharacterized protein n=1 Tax=Parvimo... 68 7e-11 UniRef50_Q1JF82 N utilization substance protein B homolog n=57 T... 68 9e-11 UniRef50_C4XHY8 N utilization substance protein B homolog n=1 Ta... 68 1e-10 UniRef50_B8FJ78 N utilization substance protein B homolog n=2 Ta... 68 1e-10 UniRef50_D0LW51 NusB antitermination factor n=1 Tax=Haliangium o... 68 1e-10 UniRef50_C8WLN1 NusB antitermination factor n=2 Tax=Coriobacteri... 68 1e-10 UniRef50_A9BJY1 NusB antitermination factor n=1 Tax=Petrotoga mo... 67 2e-10 UniRef50_Q6AP93 N utilization substance protein B homolog n=1 Ta... 67 2e-10 UniRef50_D1B5H9 NusB antitermination factor n=1 Tax=Thermanaerov... 67 2e-10 UniRef50_Q8DSE9 N utilization substance protein B homolog n=5 Ta... 67 2e-10 UniRef50_B0VJ63 N utilization substance protein B n=1 Tax=Candid... 66 3e-10 UniRef50_B0MQ18 Putative uncharacterized protein n=1 Tax=Eubacte... 66 4e-10 UniRef50_C4ZCZ0 N utilization substance protein B homolog n=5 Ta... 66 4e-10 UniRef50_C5C681 N utilization substance protein B homolog n=14 T... 65 5e-10 UniRef50_C4FTS3 Putative uncharacterized protein n=1 Tax=Catonel... 65 6e-10 UniRef50_B8ZUK7 N utilization substance protein B homolog n=16 T... 65 7e-10 UniRef50_D1B3U2 Transcription antitermination factor NusB n=3 Ta... 65 8e-10 UniRef50_Q1ISD3 N utilization substance protein B homolog n=2 Ta... 65 8e-10 UniRef50_D0MK26 NusB antitermination factor n=1 Tax=Rhodothermus... 65 1e-09 UniRef50_D2EIA0 Transcription antitermination factor NusB n=1 Ta... 64 1e-09 UniRef50_C7NCF2 NusB antitermination factor n=4 Tax=Fusobacteria... 64 1e-09 UniRef50_C1TMF2 Transcription antitermination factor NusB n=1 Ta... 64 1e-09 UniRef50_Q136T4 N utilization substance protein B homolog n=36 T... 64 1e-09 UniRef50_B2KE32 N utilization substance protein B homolog n=1 Ta... 64 1e-09 UniRef50_C8PI00 Transcription antitermination factor NusB n=1 Ta... 64 1e-09 UniRef50_B0REX0 N utilization substance protein B homolog n=4 Ta... 64 1e-09 UniRef50_A5ZPE1 Putative uncharacterized protein n=4 Tax=Clostri... 64 2e-09 UniRef50_A6DTV7 NusB antitermination factor n=1 Tax=Lentisphaera... 64 2e-09 UniRef50_C6QHP1 NusB antitermination factor n=1 Tax=Hyphomicrobi... 64 2e-09 UniRef50_Q7USA9 N utilization substance protein B homolog n=2 Ta... 63 2e-09 UniRef50_A6CAX2 Transcription antitermination protein NusB n=1 T... 63 3e-09 UniRef50_D0WFZ4 Transcription antitermination factor NusB n=1 Ta... 63 3e-09 UniRef50_Q03FZ6 N utilization substance protein B homolog n=1 Ta... 63 3e-09 UniRef50_UPI0001BC6038 transcription antitermination protein Nus... 63 3e-09 UniRef50_B9XNZ3 NusB antitermination factor n=1 Tax=bacterium El... 63 3e-09 UniRef50_C9RN69 NusB antitermination factor n=1 Tax=Fibrobacter ... 63 4e-09 UniRef50_A8TL32 NusB antitermination factor n=1 Tax=alpha proteo... 62 4e-09 UniRef50_C2D814 Putative uncharacterized protein n=1 Tax=Atopobi... 62 4e-09 UniRef50_C5NYK7 Transcription antitermination factor NusB n=1 Ta... 62 5e-09 UniRef50_A1ZKP0 NusB antitermination factor n=1 Tax=Microscilla ... 62 5e-09 UniRef50_Q0APG4 N utilization substance protein B homolog n=3 Ta... 62 5e-09 UniRef50_B0K9D9 N utilization substance protein B homolog n=10 T... 62 5e-09 UniRef50_B3QJK9 N utilization substance protein B homolog n=9 Ta... 62 6e-09 UniRef50_Q2JHC7 N utilization substance protein B homolog n=3 Ta... 62 8e-09 UniRef50_C8WEQ4 NusB antitermination factor n=4 Tax=Zymomonas mo... 61 1e-08 UniRef50_B2A534 N utilization substance protein B homolog n=1 Ta... 61 1e-08 UniRef50_A7VX44 Putative uncharacterized protein n=1 Tax=Clostri... 61 1e-08 UniRef50_Q0AZF7 N utilization substance protein B homolog n=1 Ta... 61 1e-08 UniRef50_UPI0000D5356A transcription termination factor (NusB) n... 61 1e-08 UniRef50_B0S1M1 N utilization substance protein B homolog n=2 Ta... 60 2e-08 UniRef50_A9KMC2 N utilization substance protein B homolog n=17 T... 60 2e-08 UniRef50_C9KK33 Transcription antitermination factor NusB n=1 Ta... 60 2e-08 UniRef50_B0MDS2 Putative uncharacterized protein n=1 Tax=Anaeros... 60 3e-08 UniRef50_C9LLB0 Transcription antitermination factor NusB n=1 Ta... 60 3e-08 UniRef50_A7HX88 NusB antitermination factor n=1 Tax=Parvibaculum... 60 3e-08 UniRef50_C5VC90 Transcription antitermination factor NusB n=2 Ta... 60 3e-08 UniRef50_B3DQ30 N utilization substance protein B homolog n=7 Ta... 59 3e-08 UniRef50_A0JX79 N utilization substance protein B homolog n=3 Ta... 59 3e-08 UniRef50_B0SB76 N utilization substance protein B homolog n=6 Ta... 59 4e-08 UniRef50_Q2J830 N utilization substance protein B homolog n=3 Ta... 59 4e-08 UniRef50_Q4JVG6 N utilization substance protein B homolog n=5 Ta... 59 4e-08 UniRef50_Q1AW09 N utilization substance protein B homolog n=1 Ta... 59 4e-08 UniRef50_C9LUP3 Transcription antitermination factor NusB n=2 Ta... 59 4e-08 UniRef50_UPI00016C434C transcription antitermination protein Nus... 59 4e-08 UniRef50_Q5FNA1 N utilization substance protein B homolog n=1 Ta... 59 4e-08 UniRef50_B0NZC1 Putative uncharacterized protein n=2 Tax=Clostri... 59 6e-08 UniRef50_Q8DKS0 N utilization substance protein B homolog n=1 Ta... 59 6e-08 UniRef50_A0LUG6 N utilization substance protein B homolog n=2 Ta... 59 6e-08 UniRef50_C4DFR3 Transcription antitermination factor NusB n=1 Ta... 59 6e-08 UniRef50_Q030T8 Transcription termination factor n=3 Tax=Lactoco... 58 7e-08 UniRef50_B0PBD5 Putative uncharacterized protein n=1 Tax=Anaerot... 58 7e-08 UniRef50_C4V2M6 Transcription antitermination protein NusB n=1 T... 58 8e-08 UniRef50_UPI0001C3796F transcription termination factor n=1 Tax=... 58 9e-08 UniRef50_C5SLV1 NusB antitermination factor n=2 Tax=Caulobactera... 58 9e-08 UniRef50_P74395 N utilization substance protein B homolog n=16 T... 58 1e-07 UniRef50_C7H0C2 Transcription antitermination factor NusB n=1 Ta... 58 1e-07 UniRef50_C4G0T0 Putative uncharacterized protein n=1 Tax=Abiotro... 57 1e-07 UniRef50_D0BJY7 Transcription antitermination factor NusB n=2 Ta... 57 1e-07 UniRef50_Q9CHN4 N utilization substance protein B homolog n=1 Ta... 57 1e-07 UniRef50_A8RBL8 Putative uncharacterized protein n=2 Tax=unclass... 57 1e-07 UniRef50_Q7NKZ0 N utilization substance protein B homolog n=1 Ta... 57 2e-07 UniRef50_B5YE05 N utilization substance protein B homolog n=2 Ta... 57 2e-07 UniRef50_B1W456 N utilization substance protein B homolog n=7 Ta... 57 2e-07 UniRef50_Q6NH08 N utilization substance protein B homolog n=1 Ta... 57 2e-07 UniRef50_C8W9W3 NusB antitermination factor n=1 Tax=Atopobium pa... 57 2e-07 UniRef50_C2KZE7 Putative uncharacterized protein n=1 Tax=Oribact... 57 2e-07 UniRef50_Q01T72 N utilization substance protein B homolog n=1 Ta... 57 2e-07 UniRef50_D1Y3T9 Transcription antitermination factor NusB n=1 Ta... 57 2e-07 UniRef50_Q2W4S5 N utilization substance protein B homolog n=3 Ta... 57 2e-07 UniRef50_B3ERI6 Putative uncharacterized protein n=1 Tax=Candida... 56 3e-07 UniRef50_C1SH03 Transcription antitermination factor NusB n=1 Ta... 56 3e-07 UniRef50_C6XHS5 Transcription antitermination protein NusB n=1 T... 56 3e-07 UniRef50_Q1J0I4 N utilization substance protein B homolog n=3 Ta... 56 3e-07 UniRef50_C0EFY5 Putative uncharacterized protein n=1 Tax=Clostri... 56 3e-07 UniRef50_C0VVW4 Transcription antitermination protein NusB n=2 T... 56 4e-07 UniRef50_C4GAK6 Putative uncharacterized protein n=1 Tax=Shuttle... 56 4e-07 >UniRef50_A7ZIG9 N utilization substance protein B homolog n=118 Tax=Gammaproteobacteria RepID=NUSB_ECO24 Length = 139 Score = 281 bits (720), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 139/139 (100%), Positives = 139/139 (100%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA Sbjct: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH Sbjct: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 Query: 121 KFVNGVLDKAAPVIRPNKK 139 KFVNGVLDKAAPVIRPNKK Sbjct: 121 KFVNGVLDKAAPVIRPNKK 139 >UniRef50_B8D9P0 N utilization substance protein B homolog n=5 Tax=Buchnera aphidicola RepID=NUSB_BUCA5 Length = 143 Score = 180 bits (457), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 80/139 (57%), Positives = 108/139 (77%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MKP+ RR+AR CA+Q LYSW++S N+I + FL E++ K++D++YF EL+ G+ + Sbjct: 1 MKPSFRRKARACALQVLYSWEISHNNIKESAIYFLKEKNKKNIDIVYFYELIIGITYDCK 60 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D LMKPYL R L+ELG +E+A+LRI+ YEL KR+D+PYKV+INE IELAK FG+EDSH Sbjct: 61 NIDNLMKPYLFRSLKELGHIERAILRISFYELHKRNDIPYKVSINEGIELAKLFGSEDSH 120 Query: 121 KFVNGVLDKAAPVIRPNKK 139 KF+NGVLDKA + NKK Sbjct: 121 KFINGVLDKAVFKMGYNKK 139 >UniRef50_Q493G9 N utilization substance protein B homolog n=3 Tax=Enterobacteriaceae RepID=NUSB_BLOPB Length = 144 Score = 176 bits (445), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 81/131 (61%), Positives = 103/131 (78%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK +RRRAREC +QALYSWQ+S+ND+ ++E + EQD++D ++ YF EL GV + Sbjct: 1 MKAISRRRARECTLQALYSWQVSKNDVKEIERYVVTEQDIQDCNISYFHELYIGVISCAE 60 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD LM P+LSR LE+LG +E +VLRIAL+EL+K +D+PYKVAINEAIEL K FGAE SH Sbjct: 61 ELDKLMIPHLSRNLEKLGYIEHSVLRIALFELTKCNDIPYKVAINEAIELVKIFGAEKSH 120 Query: 121 KFVNGVLDKAA 131 KF+NGVLDK A Sbjct: 121 KFINGVLDKIA 131 >UniRef50_A5F5Z6 N utilization substance protein B homolog n=91 Tax=Gammaproteobacteria RepID=NUSB_VIBC3 Length = 156 Score = 161 bits (407), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 79/149 (53%), Positives = 106/149 (71%), Gaps = 14/149 (9%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKD--------------VDVL 46 +KPAARR AR+ A+QA+YSWQ+++ ++A +E QFL + DV Sbjct: 5 VKPAARRNARQFALQAIYSWQITKENVATIEEQFLTSGKYDEEEHRAAEPALAAPETDVS 64 Query: 47 YFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINE 106 YFR+LLAGV N LD ++P++SR +++L +E A+LR+A+YE+++R DVPYKV INE Sbjct: 65 YFRDLLAGVVLNHNELDSKLRPFVSRPMQDLDMMELALLRLAMYEMTRREDVPYKVVINE 124 Query: 107 AIELAKSFGAEDSHKFVNGVLDKAAPVIR 135 AIELAK F AEDSHKFVNGVLDKAAP +R Sbjct: 125 AIELAKVFAAEDSHKFVNGVLDKAAPHVR 153 >UniRef50_Q48DC2 N utilization substance protein B homolog n=51 Tax=Gammaproteobacteria RepID=NUSB_PSE14 Length = 165 Score = 148 bits (374), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 73/134 (54%), Positives = 92/134 (68%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 K A RR AR+ A QALY W ++ + + ++E QF + D +VD YFRELL GVATN Sbjct: 23 KSAKRREARQMATQALYQWHMAGHALNEIEAQFRVDNDFSNVDGAYFRELLHGVATNKTE 82 Query: 62 LDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 +D + P L +EEL VE AVLR++ +EL KR DVPY+V INE IELAK +G+ D HK Sbjct: 83 IDTALSPCLDLTIEELDPVELAVLRLSTFELLKRIDVPYRVVINEGIELAKVYGSTDGHK 142 Query: 122 FVNGVLDKAAPVIR 135 FVNGVLDK AP +R Sbjct: 143 FVNGVLDKLAPRLR 156 >UniRef50_B0UU23 N utilization substance protein B homolog n=33 Tax=Gammaproteobacteria RepID=NUSB_HAES2 Length = 144 Score = 147 bits (371), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 73/135 (54%), Positives = 94/135 (69%), Gaps = 2/135 (1%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQD--VKDVDVLYFRELLAGVATNT 59 K + RRRARECAVQ LYSW +S+N ++E F+ +QD +K VD+ YFR+L + Sbjct: 7 KISPRRRARECAVQNLYSWAISKNSPEEIELNFIVDQDNEMKGVDMPYFRKLFHQTINHV 66 Query: 60 AYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D M PYL R EL +E A+LR+A+YEL DVPYKV INEAIE+AK FGAE+S Sbjct: 67 ETIDSTMAPYLDRDNVELDPIECAILRLAVYELKFELDVPYKVVINEAIEVAKVFGAEES 126 Query: 120 HKFVNGVLDKAAPVI 134 HK++NGVLDK AP + Sbjct: 127 HKYINGVLDKIAPAL 141 >UniRef50_Q1IFL9 N utilization substance protein B homolog n=12 Tax=Proteobacteria RepID=NUSB_PSEE4 Length = 166 Score = 144 bits (363), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 71/134 (52%), Positives = 90/134 (67%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 K A RR AR+ A QALY W ++++ + +VE QF + D DVD YFRE+L GV Sbjct: 24 KSAKRREARKLATQALYQWHMAKHSLNEVEAQFRVDNDFSDVDGAYFREILHGVPAKKVE 83 Query: 62 LDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 +D +KP L LEEL VE +VLR++ +E R+DVPY+V INE +ELAK FGA D HK Sbjct: 84 IDEALKPCLDTPLEELDPVELSVLRLSAWEFMMRADVPYRVVINEGVELAKVFGATDGHK 143 Query: 122 FVNGVLDKAAPVIR 135 FVNGVLDK AP +R Sbjct: 144 FVNGVLDKLAPRLR 157 >UniRef50_Q21F20 N utilization substance protein B homolog n=5 Tax=Gammaproteobacteria RepID=NUSB_SACD2 Length = 150 Score = 142 bits (359), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 74/136 (54%), Positives = 93/136 (68%), Gaps = 1/136 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 AAR RAR A+QALY W++S N + +E +F + D+ VDV YF E+L GVA + LD Sbjct: 6 AARGRARHFAMQALYQWEMSGNALHVIEAEFHTDNDMSKVDVEYFHEILHGVAAIKSTLD 65 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 KP+L+ L L+E+ V AVLR A YE KR DVPYKV INEA+ LAK FGA DSHKF Sbjct: 66 ETFKPFLTGLRLDEIDPVSLAVLRQACYEFEKRVDVPYKVVINEAVNLAKKFGAADSHKF 125 Query: 123 VNGVLDKAAPVIRPNK 138 +NGVLDK A +R ++ Sbjct: 126 INGVLDKVALRVRKDE 141 >UniRef50_A4VHT5 N utilization substance protein B homolog n=23 Tax=Gammaproteobacteria RepID=NUSB_PSEU5 Length = 161 Score = 140 bits (353), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 71/134 (52%), Positives = 88/134 (65%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 K A RR AR A+QALY W ++ + ++E QF + D VD YF ELL GVA Sbjct: 19 KIATRRVARSLAMQALYQWHMAGQSLNEIEAQFRVDNDFSGVDGAYFHELLNGVARKKTE 78 Query: 62 LDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 +D + P L R L+EL VE A+LR++ YEL +R DVPY+V INE IELAK +GA D HK Sbjct: 79 VDQAIAPNLDRPLDELDPVELAILRLSTYELMQRIDVPYRVVINEGIELAKVYGATDGHK 138 Query: 122 FVNGVLDKAAPVIR 135 FVNGVLDK AP +R Sbjct: 139 FVNGVLDKLAPSLR 152 >UniRef50_Q2BM00 NusB protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BM00_9GAMM Length = 159 Score = 139 bits (350), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 69/130 (53%), Positives = 91/130 (70%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 RR AR A+QALYSW L+ + ++E QF + D++D D+ F ELL +A + LD L Sbjct: 20 RRNARSYALQALYSWTLAGQPLNELEAQFRVDNDMRDTDIRLFSELLHSIAGGKSELDQL 79 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 +L R ++EL +E VLRI YELSKR +VPY+VAINE++ELAK+FGA DSHK+VNG Sbjct: 80 YTDFLDRNVDELDPIELNVLRIGAYELSKRFEVPYRVAINESVELAKTFGATDSHKYVNG 139 Query: 126 VLDKAAPVIR 135 VLDK A +R Sbjct: 140 VLDKLAQRVR 149 >UniRef50_C5BS84 N utilization substance protein B homolog n=2 Tax=Gammaproteobacteria RepID=NUSB_TERTT Length = 147 Score = 138 bits (348), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 71/133 (53%), Positives = 88/133 (66%), Gaps = 1/133 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 A R RAR A+QA+Y WQ++ N + +E +F + D+ VD YF EL GVA + + LD Sbjct: 6 ATRSRARHFAMQAIYQWQMNGNPLHVIEAEFHTDNDMSKVDTEYFHELFHGVAADKSALD 65 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 P+L L LE+L V A+LR A +EL R DVPYKV INEA+ LAK FGAEDSHKF Sbjct: 66 ACFLPHLKSLPLEKLDPVTLALLRQATFELKNRVDVPYKVVINEAVNLAKKFGAEDSHKF 125 Query: 123 VNGVLDKAAPVIR 135 VNGVLDK A +R Sbjct: 126 VNGVLDKVAADLR 138 >UniRef50_A6W2L6 N utilization substance protein B homolog n=4 Tax=Gammaproteobacteria RepID=NUSB_MARMS Length = 174 Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 67/132 (50%), Positives = 93/132 (70%), Gaps = 2/132 (1%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQD--VKDVDVLYFRELLAGVATNTAYLD 63 R +R A+QA+Y WQ+++ ++++E QF+ +QD + D +YFRELL GV + LD Sbjct: 27 RSASRRLALQAVYQWQMNKTAVSEIETQFVIDQDRDMDSCDKVYFRELLQGVTASAKKLD 86 Query: 64 GLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 L + L R L EL +E AV+RI YELS+R DVPY+VAINE++ELAK FGA +SHK+V Sbjct: 87 TLFEELLDRPLSELDPIELAVMRIGSYELSQRLDVPYRVAINESVELAKGFGATESHKYV 146 Query: 124 NGVLDKAAPVIR 135 NG+LDK A +R Sbjct: 147 NGILDKLAQRVR 158 >UniRef50_A7C6S2 Transcription antitermination protein NusB n=1 Tax=Beggiatoa sp. PS RepID=A7C6S2_9GAMM Length = 164 Score = 132 bits (332), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 67/141 (47%), Positives = 88/141 (62%), Gaps = 12/141 (8%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQ------------DVKDVDVLYFRE 50 P AR ARE +QALY WQL+ + +E QFL E D++ D+ YF++ Sbjct: 10 PKARHVARERVLQALYQWQLTGQNTQLIESQFLDESTLSKEEDESEEPDMQKADIPYFKQ 69 Query: 51 LLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIEL 110 LL + T+ LD L P+L R + +L VE A+LRI YEL+ D+P+KV INEA+EL Sbjct: 70 LLHSIPEKTSDLDKLFAPFLDRKITQLDPVELAILRIGSYELTHCQDIPFKVVINEAVEL 129 Query: 111 AKSFGAEDSHKFVNGVLDKAA 131 AK FGAE SHK++NGVLDK A Sbjct: 130 AKQFGAEQSHKYINGVLDKLA 150 >UniRef50_Q31FT2 N utilization substance protein B homolog n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=NUSB_THICR Length = 161 Score = 128 bits (322), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 60/136 (44%), Positives = 92/136 (67%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 + R + R A+QALY WQ++ ++ D+ QF E + D DV F+E++ VA + A LD Sbjct: 22 SVRTQTRRVALQALYQWQVNHSETVDIIKQFSEEGRLVDTDVALFQEIVNEVANHAADLD 81 Query: 64 GLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 L P+L R + + VEK ++R+ ++EL + ++PY+V INE++ELAK FGAEDSHK++ Sbjct: 82 ELYAPFLDRAVARIDPVEKNIMRMGVFELQNKLEIPYRVVINESVELAKRFGAEDSHKYI 141 Query: 124 NGVLDKAAPVIRPNKK 139 NG+LDKAA +R +K Sbjct: 142 NGILDKAAEGLRSLEK 157 >UniRef50_Q3JCY0 N utilization substance protein B homolog n=2 Tax=Nitrosococcus oceani RepID=NUSB_NITOC Length = 148 Score = 128 bits (322), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 61/130 (46%), Positives = 86/130 (66%), Gaps = 1/130 (0%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R +AR A+Q LY WQL D+ ++ +F+ QD++ +D YF+ELL GV LD Sbjct: 5 RSKARTAALQGLYQWQLMGQDVDKIDIEFIV-QDIRGIDHAYFQELLRGVPQRQGELDEC 63 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 + P+L R + E+ VE A+LRI +EL R ++PY+V +NEAIELAK FGAE H++VNG Sbjct: 64 LGPFLDRPINEVDPVECAILRIGAFELLCRPEIPYRVVLNEAIELAKRFGAEHGHRYVNG 123 Query: 126 VLDKAAPVIR 135 +LDK A +R Sbjct: 124 ILDKVAQKVR 133 >UniRef50_Q1N2N9 Transcription antitermination protein NusB n=1 Tax=Bermanella marisrubri RepID=Q1N2N9_9GAMM Length = 128 Score = 125 bits (315), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 59/122 (48%), Positives = 84/122 (68%) Query: 14 VQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL 73 +QALY W L+ ++++E +FL + D+ VD YFR++L GV LD + P LSR Sbjct: 1 MQALYQWDLAGASLSNIEAEFLTDNDMSKVDTEYFRDILRGVPRELDDLDEKLAPCLSRN 60 Query: 74 LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPV 133 ++E+ VE+A+LR+ YEL R DVPY+V INE++EL+K FGA +SHKF+NG LDK A Sbjct: 61 MQEVTPVERAILRLGAYELLHRIDVPYRVVINESVELSKKFGANESHKFINGALDKLAQA 120 Query: 134 IR 135 +R Sbjct: 121 VR 122 >UniRef50_A8PLC7 Transcription antitermination factor NusB n=1 Tax=Rickettsiella grylli RepID=A8PLC7_9COXI Length = 148 Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 59/127 (46%), Positives = 89/127 (70%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 A++RAR AVQA+Y WQL+Q + ++ +FLA++++K VD YF ++ G+ + LD Sbjct: 12 AKQRARRFAVQAIYQWQLTQETFSVIQTKFLAQEEMKSVDTAYFTLIVQGILNDHELLDR 71 Query: 65 LMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 ++ ++ R L +L VE A+LR+ YEL S++PYKV +NEAIELAK FGA DS+K+VN Sbjct: 72 YLQSFVDRPLCQLDCVEWAILRLGTYELLNCSEIPYKVILNEAIELAKMFGATDSYKYVN 131 Query: 125 GVLDKAA 131 G+L + A Sbjct: 132 GILHRIA 138 >UniRef50_Q3BXH9 N utilization substance protein B homolog n=20 Tax=Xanthomonadaceae RepID=NUSB_XANC5 Length = 162 Score = 122 bits (307), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 62/117 (52%), Positives = 79/117 (67%) Query: 15 QALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLL 74 QA+Y+WQ+S V QF EQ + D+ YF L+ GV +N A LD + PYL R + Sbjct: 30 QAVYAWQISGGFAKQVIAQFAHEQAHEVADLAYFENLVEGVLSNRAELDTALTPYLDRSV 89 Query: 75 EELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAA 131 EE+ +E+AVLR+A YEL R DVPY+V INEAIE AK FG+E H +VNGVLD+AA Sbjct: 90 EEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRFGSEHGHTYVNGVLDRAA 146 >UniRef50_B6IZ82 N utilization substance protein B homolog n=6 Tax=Coxiella burnetii RepID=NUSB_COXB2 Length = 138 Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 60/135 (44%), Positives = 82/135 (60%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 M R AR A+QALY W + + QF+ E D+ D DV YF+E++ G + A Sbjct: 1 MINKTRHNARRYALQALYQWFFCETKPDALISQFMEEHDLSDTDVAYFKEVVTGTIQHVA 60 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D LM +L R + L VE +VLR+++YEL R +VPYKV I+EA+EL K FGAE H Sbjct: 61 IIDELMTAHLDRKISALNPVELSVLRLSIYELLHRKEVPYKVVIDEALELVKEFGAEAGH 120 Query: 121 KFVNGVLDKAAPVIR 135 K+VN +LD + IR Sbjct: 121 KYVNAILDVLSSEIR 135 >UniRef50_C4KD91 NusB antitermination factor n=1 Tax=Thauera sp. MZ1T RepID=C4KD91_THASP Length = 166 Score = 118 bits (296), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 61/133 (45%), Positives = 80/133 (60%), Gaps = 1/133 (0%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAE-QDVKDVDVLYFRELLAGVATNTAYLD 63 ARRRARE A+Q +Y W LS N+ V+ +E +++ +D F LL G L Sbjct: 23 ARRRARELALQGVYQWLLSGNNATTVQRHLESETENLDKIDRELFVSLLRGATGAADELR 82 Query: 64 GLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 G +P LSR + EL +E A+L + +EL D PY+V INEAIELAK +G D HKFV Sbjct: 83 GCFEPLLSRPVAELSPIEHAILLLGTHELRHNLDTPYRVVINEAIELAKGYGGTDGHKFV 142 Query: 124 NGVLDKAAPVIRP 136 NGVLDK + +RP Sbjct: 143 NGVLDKLSTRLRP 155 >UniRef50_Q0K7T8 N utilization substance protein B homolog n=70 Tax=Betaproteobacteria RepID=NUSB_RALEH Length = 172 Score = 117 bits (294), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 60/132 (45%), Positives = 80/132 (60%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +ARRR+RE A+Q LY W L++NDI ++ Q D +F LL G A L Sbjct: 33 SARRRSRELALQGLYQWLLNRNDIGAIQAHLHDAQGFNKADREHFDALLNGAVREEARLT 92 Query: 64 GLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 +P+L R +EEL VE+A L + YEL D+PYKV INEA+EL K+FG + +K+V Sbjct: 93 AAFEPFLDRKVEELSPVERAALLVGSYELVHCLDIPYKVVINEAVELTKTFGGVEGYKYV 152 Query: 124 NGVLDKAAPVIR 135 NGVLDK A +R Sbjct: 153 NGVLDKLAAQVR 164 >UniRef50_A1WVG0 N utilization substance protein B homolog n=1 Tax=Halorhodospira halophila SL1 RepID=NUSB_HALHL Length = 155 Score = 117 bits (294), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 59/129 (45%), Positives = 86/129 (66%), Gaps = 1/129 (0%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R RAR VQALY + ++ D+E QFLA + D+DV YFREL+ GV A LD Sbjct: 10 RSRARSKLVQALYQYAVTGASAEDIERQFLA-AGLGDIDVAYFRELIYGVTDRAAELDEQ 68 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 + L R L +L VE+++LR+ +ELS+R +VPY+V I+E++ELA+ FGA+ SH+++NG Sbjct: 69 LSALLDRPLVQLDPVERSILRLGAFELSERLEVPYRVVIDESVELARRFGADQSHRYING 128 Query: 126 VLDKAAPVI 134 VLD+ + Sbjct: 129 VLDRFGATV 137 >UniRef50_Q057F3 N utilization substance protein B homolog n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=NUSB_BUCCC Length = 142 Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 58/128 (45%), Positives = 88/128 (68%), Gaps = 1/128 (0%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVK-DVDVLYFRELLAGVATNTAY 61 + RR+ARE A+Q LYSWQ+S+ + +++ EQ+ K +D +YF +++ GV N Y Sbjct: 2 KSKRRKARELAIQVLYSWQISKKIVLFETEKYVIEQNKKYSLDKIYFHKIVTGVIKNIFY 61 Query: 62 LDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 +D ++K +S+ L +E+A+LR+A YE+ KR D+PYKV INE IELAK +G+ SHK Sbjct: 62 IDKIIKKNISKKKNRLDYIEQAILRLASYEIIKRLDIPYKVIINEGIELAKIYGSNKSHK 121 Query: 122 FVNGVLDK 129 F+N +LDK Sbjct: 122 FINSILDK 129 >UniRef50_C1DB31 N utilization substance protein B homolog n=3 Tax=Neisseriaceae RepID=NUSB_LARHH Length = 165 Score = 111 bits (278), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 56/131 (42%), Positives = 80/131 (61%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 RRRARE AVQ +Y WQL+ A +E + D FR LL GV + ++ Sbjct: 5 RRRAREFAVQGIYQWQLNALTPATIEKNLRDNEQFAKADEALFRTLLYGVLNDPVRIESA 64 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 + + R E++ VE+AVL +A +EL+++++ P V INEAIE+AK+FG + H+FVNG Sbjct: 65 IASHFERAPEDVSPVERAVLLMAAFELTQQAETPLAVIINEAIEIAKTFGGAEGHRFVNG 124 Query: 126 VLDKAAPVIRP 136 VLDK A +RP Sbjct: 125 VLDKYAAEVRP 135 >UniRef50_A1W9I4 N utilization substance protein B homolog n=6 Tax=Comamonadaceae RepID=NUSB_ACISJ Length = 177 Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 55/132 (41%), Positives = 74/132 (56%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 + R RARE A+QALY + ND ++ D ++ LL G T Y+D Sbjct: 33 SGRSRAREFALQALYQHLVGGNDATAIDVFTRDLSGFHKADAAHYDALLHGCITTAQYMD 92 Query: 64 GLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 L+ P L R + E+ +E AV+ I +YE DVP++V INE IELAK FG D HK+V Sbjct: 93 ELIAPQLDRKMSEISPIEHAVMWIGVYEFQHCQDVPWRVVINECIELAKEFGGTDGHKYV 152 Query: 124 NGVLDKAAPVIR 135 NGVL+ AP +R Sbjct: 153 NGVLNGLAPQLR 164 >UniRef50_B5ELV9 NusB antitermination factor n=3 Tax=Acidithiobacillus RepID=B5ELV9_ACIF5 Length = 147 Score = 109 bits (272), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 60/138 (43%), Positives = 84/138 (60%), Gaps = 3/138 (2%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNT 59 MK + RR AR+ AVQALY WQ++ A++E QF ++ + ++ DV +F+ L GV Sbjct: 1 MKISRRRLARQAAVQALYQWQMNPGHCAEIELQFTSDPERLQGADVAFFKSLWQGVCAAI 60 Query: 60 AYLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 + LD + + R +E+ +VE+A+LR+A EL PY+V INEAIEL K FG E Sbjct: 61 SELDPAIAEEVQDRRWADEVSEVERAILRLAACELRDYPQTPYRVIINEAIELDKDFGGE 120 Query: 118 DSHKFVNGVLDKAAPVIR 135 H+FVN VLDK A R Sbjct: 121 QGHRFVNAVLDKLAQRWR 138 >UniRef50_Q5X720 N utilization substance protein B homolog n=6 Tax=Legionella RepID=NUSB_LEGPA Length = 147 Score = 109 bits (272), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 52/131 (39%), Positives = 82/131 (62%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 +RRAR+ A+QALY W +S D+ ++E QF ++ VD YF LL G+ T+ L+ Sbjct: 8 GKRRARKFALQALYQWLMSGTDLHEIEAQFRTINNMDKVDGEYFCRLLYGIPTHVEALEA 67 Query: 65 LMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + PYL R + L +E VLRI +EL ++PYKV ++E++ L K FG+++ +++VN Sbjct: 68 SLLPYLDREINALNPIELTVLRIGSFELFHCPEIPYKVILDESVSLTKEFGSQEGYRYVN 127 Query: 125 GVLDKAAPVIR 135 GVL+ A +R Sbjct: 128 GVLNNLAKQVR 138 >UniRef50_C7HWX1 NusB antitermination factor n=1 Tax=Thiomonas intermedia K12 RepID=C7HWX1_THIIN Length = 202 Score = 109 bits (272), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 56/133 (42%), Positives = 82/133 (61%), Gaps = 2/133 (1%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQ-DVKDVDVLYFRELLAGVATNTAYL 62 +ARR++RE A Q +Y W L+ +D +E FL E+ +D +F+ LL G L Sbjct: 9 SARRKSRELAFQGIYEWLLAGSDTGAIE-AFLHERYPTIKLDDDHFQSLLHGALAEAGPL 67 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 D L++P++ R EL VE A+L + +EL + DVPY+V INEA+EL K +G D +K+ Sbjct: 68 DALIQPHIDRQTSELSPVEHALLLMGAFELQRHLDVPYRVVINEAVELGKVYGGTDGYKY 127 Query: 123 VNGVLDKAAPVIR 135 VNGVLD+ A +R Sbjct: 128 VNGVLDRIAAQLR 140 >UniRef50_D0L1W4 NusB antitermination factor n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L1W4_HALNC Length = 196 Score = 108 bits (271), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 59/140 (42%), Positives = 89/140 (63%), Gaps = 3/140 (2%) Query: 2 KPAARRR---ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATN 58 KP+ ++R ARE AVQALY L+ + ++ QF+ + + VD+ FR ++ GV+ N Sbjct: 54 KPSPKKRWRWARERAVQALYQQILNHTPVDLLDAQFMEDAFMLKVDLELFRRIVRGVSAN 113 Query: 59 TAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 LD P L R L E+ +E+A+LR+ +EL ++P VAINEA+E+AK +GA + Sbjct: 114 EESLDEAYSPLLDRPLAEIDPIEQAILRLGAFELIHTPEIPRAVAINEAVEMAKLYGATE 173 Query: 119 SHKFVNGVLDKAAPVIRPNK 138 SHK++NGVLDK A +R N+ Sbjct: 174 SHKYINGVLDKLADRVRLNE 193 >UniRef50_Q1H424 N utilization substance protein B homolog n=2 Tax=Betaproteobacteria RepID=NUSB_METFK Length = 154 Score = 107 bits (268), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 59/142 (41%), Positives = 84/142 (59%), Gaps = 5/142 (3%) Query: 2 KPA-----ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVA 56 KPA +RR++RE ++ +Y ++Q D + + + + D D YFR+LL GVA Sbjct: 7 KPAPKAGRSRRKSRELVLKGIYLGLMNQKDTSVIIRELADDPDFDRADYEYFRQLLEGVA 66 Query: 57 TNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 + LD + L R + EL +E A+L IA YEL +PY+VAINE +ELAK +G Sbjct: 67 ESIDELDARLAGLLDRQVSELSPIEHAILCIAAYELIHDVTIPYRVAINEGVELAKLYGG 126 Query: 117 EDSHKFVNGVLDKAAPVIRPNK 138 D HK+VNGVLDK A RP++ Sbjct: 127 TDGHKYVNGVLDKIAAEARPDE 148 >UniRef50_C6WU13 NusB antitermination factor n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WU13_METML Length = 178 Score = 107 bits (268), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 55/130 (42%), Positives = 78/130 (60%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 RR++RE ++A+Y L+ ++++ V + D D YF+ LL V N +DG Sbjct: 40 RRKSRELVLKAVYRGMLNDSELSQVFRDMRDDPDYNKADEAYFKHLLQAVTENLTAIDGK 99 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 + ++ R LEEL VE A+LRIA EL +PY+V INE +ELAK FG D HK++NG Sbjct: 100 IVGFIDRTLEELSPVEHAILRIAGCELMFDLSIPYRVVINEGVELAKVFGGTDGHKYING 159 Query: 126 VLDKAAPVIR 135 VLDK A +R Sbjct: 160 VLDKFAADVR 169 >UniRef50_Q0AD60 N utilization substance protein B homolog n=3 Tax=Nitrosomonas RepID=NUSB_NITEC Length = 167 Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 54/130 (41%), Positives = 78/130 (60%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 RR +RE A+Q +Y W+L+ + +++ Q D YF +LL GV ++ L+ Sbjct: 23 RRLSRELALQGIYQWRLAGGNAQEIDLQLQQVNFYSKADGSYFSDLLQGVLEHSRDLEAQ 82 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 ++ YL R L EL VE ++L I YE+ ++P + INEAIELAKS+G D HK+VNG Sbjct: 83 IQAYLDRQLAELSPVECSILLIGTYEMVHHPEIPCRAIINEAIELAKSYGGTDGHKYVNG 142 Query: 126 VLDKAAPVIR 135 VLDK A +R Sbjct: 143 VLDKLAAQLR 152 >UniRef50_Q5F9Y0 N utilization substance protein B homolog n=22 Tax=Neisseria RepID=NUSB_NEIG1 Length = 141 Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 57/135 (42%), Positives = 78/135 (57%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 ARRR+RE AVQA+Y +++ ++ D D F +L G TN A Sbjct: 3 TARRRSRELAVQAVYQSLINRTAAPEIAKNIREMSDFAKADEELFNKLFFGTQTNAADYI 62 Query: 64 GLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 ++P L R ++L +E+AVL A +ELS + PY V INEAIE+ K+FG D HKFV Sbjct: 63 QKIRPLLDRDEKDLNPIERAVLLTACHELSAMPETPYPVIINEAIEVTKTFGGTDGHKFV 122 Query: 124 NGVLDKAAPVIRPNK 138 NG+LDK A IRP++ Sbjct: 123 NGILDKLAAQIRPDE 137 >UniRef50_Q2YD50 N utilization substance protein B homolog n=4 Tax=Betaproteobacteria RepID=NUSB_NITMU Length = 158 Score = 105 bits (263), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 53/130 (40%), Positives = 74/130 (56%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 RR ARE A+Q LY W ++ +E Q ++ D YF LL GV L+ Sbjct: 21 RRLARELALQGLYQWCVAGGSAGTIEAQLRDTEEFPKTDEEYFSRLLHGVLMQAPELEKE 80 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 ++P L R EL VE ++L + YEL + ++PY+ INEA+ELAK++G HK+VNG Sbjct: 81 IQPCLDRPFNELSPVEISILLLGAYELERHPEIPYRAVINEAVELAKAYGGTHGHKYVNG 140 Query: 126 VLDKAAPVIR 135 VLDK A +R Sbjct: 141 VLDKLAVKLR 150 >UniRef50_Q479L3 N utilization substance protein B homolog n=3 Tax=Betaproteobacteria RepID=NUSB_DECAR Length = 163 Score = 105 bits (262), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 53/135 (39%), Positives = 77/135 (57%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +ARRRARE +Q LY W++ D A +E + D +F L GV + L Sbjct: 20 SARRRAREFVLQGLYQWRVGGADEASIEAYAPEMEGFAKADREFFVGTLRGVISQQEKLI 79 Query: 64 GLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 + ++ R EL VE +L + +E+ ++ PY+V INEAIEL K+FG D HK+V Sbjct: 80 EQVSTHIDRPFNELSPVEACILMLGSFEMLNHAETPYRVIINEAIELTKAFGGTDGHKYV 139 Query: 124 NGVLDKAAPVIRPNK 138 NGVLDK A ++RP++ Sbjct: 140 NGVLDKVAAILRPDE 154 >UniRef50_B5JUN2 Transcription antitermination factor NusB n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JUN2_9GAMM Length = 188 Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 58/142 (40%), Positives = 87/142 (61%), Gaps = 7/142 (4%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQ-------DVKDVDVLYFRELLAGVAT 57 ARR+ R+ +QALY + + + QF ++ D+ VD +F+ L+ Sbjct: 47 ARRKTRQRILQALYQCYFNPLPSSKLVQQFYDDEVGEEEGNDMFGVDADFFQAALSTCVD 106 Query: 58 NTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 T LD L +L ++ L VE +LR+A++ELS+R DVP +V INEA+ELAKS+GAE Sbjct: 107 KTEQLDELYCAHLKMPIDRLDPVELCILRLAVFELSERLDVPRRVVINEAVELAKSYGAE 166 Query: 118 DSHKFVNGVLDKAAPVIRPNKK 139 D HKF+NGV+DK A +RP+++ Sbjct: 167 DGHKFINGVIDKTARDLRPHEQ 188 >UniRef50_A5CWS4 N utilization substance protein B n=2 Tax=sulfur-oxidizing symbionts RepID=A5CWS4_VESOH Length = 141 Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 53/130 (40%), Positives = 82/130 (63%), Gaps = 1/130 (0%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 ++R RE +QALY + +S ++ +E QFL ++ K + ++F +L + N LD L Sbjct: 7 KQRTRERVIQALYQYLVSGGEVFQIEQQFLNQKQGK-ISKVFFSDLFINILENRFVLDEL 65 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 + +SR EELG VE ++L + +EL S+VPYKV INE++ LAK +GAE S+K +N Sbjct: 66 ITSTISRGTEELGSVEHSILYLGTFELKFNSEVPYKVVINESLALAKLYGAEGSYKLINV 125 Query: 126 VLDKAAPVIR 135 LDK A ++R Sbjct: 126 SLDKLARILR 135 >UniRef50_D1KDZ6 Transcription termination factor n=1 Tax=uncultured SUP05 cluster bacterium RepID=D1KDZ6_9GAMM Length = 142 Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 54/130 (41%), Positives = 82/130 (63%), Gaps = 1/130 (0%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 ++R+RE VQA+Y + +S ++ +E QFL +++ K + +F L + N LD L Sbjct: 7 KQRSRERVVQAVYQYLVSGGEVLQIEQQFLNQKEGK-ISKAFFSNLFINILKNRIELDEL 65 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 + P +SR +ELG VE AVL + +YEL +VPYKV INEA+E+AK +GAE + K +N Sbjct: 66 IAPTISRETDELGSVEHAVLYLGVYELQNSIEVPYKVVINEALEIAKLYGAEGAFKLINS 125 Query: 126 VLDKAAPVIR 135 LD+ A +R Sbjct: 126 SLDQLAKDLR 135 >UniRef50_C5TIT6 Transcription antitermination factor NusB n=5 Tax=Neisseriaceae RepID=C5TIT6_NEIFL Length = 142 Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 53/135 (39%), Positives = 78/135 (57%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 + RRRARE AVQA+Y +++ ++ ++D F +L G T+ Sbjct: 3 SPRRRARELAVQAIYQAGINKTAAPEIAKNIHELSQTSNMDEELFNKLFFGTQTHAEEYM 62 Query: 64 GLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 + P L R ++L +E+AVL +A +ELS + PY V INEAIE+ K+FG D HKFV Sbjct: 63 EKISPLLDRDEKDLSPIERAVLLVACHELSTMPETPYPVIINEAIEVTKTFGGTDGHKFV 122 Query: 124 NGVLDKAAPVIRPNK 138 NG+LD+ A IRP++ Sbjct: 123 NGILDQLASRIRPDE 137 >UniRef50_Q5P3H4 N utilization substance protein B homolog n=9 Tax=Betaproteobacteria RepID=NUSB_AZOSE Length = 145 Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 54/125 (43%), Positives = 69/125 (55%) Query: 11 ECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL 70 E A+Q +Y W LS N + +E D F LL G N L P++ Sbjct: 12 EFALQGIYQWLLSANSMLLIEEHVSQVSGFDKADRELFISLLRGTLNNVDDLQAEFAPFI 71 Query: 71 SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 R + EL VE+A+L +A +EL D PY+V INEAIELAKS+G D H+FVNGVLDK Sbjct: 72 HRAVHELSPVERAILLLATHELKHNLDTPYRVIINEAIELAKSYGGTDGHRFVNGVLDKL 131 Query: 131 APVIR 135 A +R Sbjct: 132 ATQLR 136 >UniRef50_Q0ABQ3 N utilization substance protein B homolog n=2 Tax=Ectothiorhodospiraceae RepID=NUSB_ALHEH Length = 178 Score = 101 bits (252), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 56/132 (42%), Positives = 76/132 (57%), Gaps = 19/132 (14%) Query: 18 YSWQLSQNDIADVEYQFLAEQDVKD------------------VDVLYFRELLAGVATNT 59 Y WQ++ D+ +E Q L E D ++ +D YFR LL GV Sbjct: 29 YQWQMTGQDLGAIEAQHL-EIDPEEPPVEAGDDEHYPRYPHDGLDRPYFRALLHGVPARL 87 Query: 60 AYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 LD ++P L R L L +EKA+LR+ +ELS+R D P++V INEA+ LAK FGAE S Sbjct: 88 NDLDQALEPLLDRPLRTLDPLEKALLRLGAWELSERMDTPWRVIINEAVNLAKRFGAEQS 147 Query: 120 HKFVNGVLDKAA 131 H+++NGVLDK A Sbjct: 148 HRYINGVLDKLA 159 >UniRef50_A9BVN7 N utilization substance protein B homolog n=7 Tax=Comamonadaceae RepID=NUSB_DELAS Length = 212 Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 51/130 (39%), Positives = 72/130 (55%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R RARE A+QALY + ND+ ++ D +++ LL G + LD L Sbjct: 35 RSRAREFALQALYQHLVGGNDVEAIDRFTRDLSGFHKADSVHYDALLRGCINSQVDLDAL 94 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 + P L R + E+ +E A + I +YE DVP++V +NE IELAK FG D HK+VN Sbjct: 95 IAPKLDRTMAEISPIEHASMWIGVYEFQHCPDVPWRVVLNECIELAKEFGGTDGHKYVNA 154 Query: 126 VLDKAAPVIR 135 VL+ AP +R Sbjct: 155 VLNGLAPTLR 164 >UniRef50_Q607V0 N utilization substance protein B homolog n=1 Tax=Methylococcus capsulatus RepID=NUSB_METCA Length = 198 Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 68/185 (36%), Positives = 92/185 (49%), Gaps = 54/185 (29%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLA---------------------------- 36 AR AR AVQA+Y WQL+++ + D+E QF+ Sbjct: 4 ARTLARRAAVQAVYQWQLARDSLPDIERQFVEELQLAKSLYRRHAEGFELSPPEREQLEE 63 Query: 37 ---------------EQDVK-----------DVDVLYFRELLAGVATNTAYLDGLMKPYL 70 E+DV DV V YF+ELL GVA N A LD + YL Sbjct: 64 LLEKFGRSQGTDEVEEEDVTLEQRASQCQVPDVQVGYFKELLHGVANNLALLDAALAKYL 123 Query: 71 SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 R ++E+ VE+A+LRI YE +R + PY+V +NEAI LAK FGA S+++VNG+LD+ Sbjct: 124 DRPIDEVDPVERAILRIGCYEFMRRPETPYRVILNEAINLAKEFGAAQSYRYVNGILDRV 183 Query: 131 APVIR 135 A R Sbjct: 184 AHECR 188 >UniRef50_A5EVR1 Transcription antitermination factor NusB n=2 Tax=Cardiobacteriaceae RepID=A5EVR1_DICNV Length = 145 Score = 99.4 bits (246), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 52/126 (41%), Positives = 75/126 (59%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R +AR +Q LY WQ+ +D V+ + + ++D YF A + TNT LD Sbjct: 14 RSQARRQLLQGLYQWQIIGDDAEIVKENQMIDARAGEIDHDYFDAAWAYITTNTEQLDCC 73 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 ++ R + L VE A+L I +YEL++R D+ V INEA+ELAK FG++D +KFVNG Sbjct: 74 AADFIRRNMATLDPVEHAILWIGIYELTQRIDIHQNVIINEAVELAKQFGSDDGYKFVNG 133 Query: 126 VLDKAA 131 VLD+ A Sbjct: 134 VLDQCA 139 >UniRef50_UPI0000E87F00 transcription antitermination protein NusB n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87F00 Length = 155 Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 54/133 (40%), Positives = 79/133 (59%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 RR++RE ++++Y ++Q DI ++ + D D + ++ GV N L Sbjct: 18 RRKSRELVMKSIYRGIVNQFDINQIKKDIREDPDFVRSDESMYLSIVEGVHNNFDSLKEE 77 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 +K YL R +EL +E A+L +LYEL DVPY+V INEAIE+AKSFG D KF+NG Sbjct: 78 IKTYLDRSYDELSPIELAILFSSLYELKFSLDVPYRVVINEAIEVAKSFGGVDGFKFING 137 Query: 126 VLDKAAPVIRPNK 138 +L+KAA R N+ Sbjct: 138 ILNKAAQHNRKNE 150 >UniRef50_C6X9V7 NusB antitermination factor n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6X9V7_METSD Length = 158 Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 51/133 (38%), Positives = 77/133 (57%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 RR++RE A++ +Y ++Q D + + E + D Y R+LL GV LD Sbjct: 20 RRKSRELALKGIYRNLMNQADFRAILRELADEPEFDKADQEYLRKLLDGVLAEREELDRR 79 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 + ++ R ++EL +E +L ++ YEL +PY+VAINE +ELAK +G D HK+VNG Sbjct: 80 IAVFVDRPMQELSPIEHGILCLSAYELIFDLSIPYRVAINEGVELAKIYGGTDGHKYVNG 139 Query: 126 VLDKAAPVIRPNK 138 VLDK A RP + Sbjct: 140 VLDKLAAEARPGE 152 >UniRef50_C6CU26 NusB antitermination factor n=3 Tax=Bacillales RepID=C6CU26_PAESJ Length = 153 Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 62/141 (43%), Positives = 86/141 (60%), Gaps = 23/141 (16%) Query: 6 RRRARECAVQALYSWQLSQNDIA----------------DVEYQFLAEQDVKDVDVLYFR 49 RR ARE AV +LY QL N++ ++E +F+ E D D Y R Sbjct: 3 RRLAREIAVSSLY--QLEMNEVTPMEAVDMLMEEARSENEIEAEFV-ENDQTDN---YVR 56 Query: 50 ELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAI 108 EL+ GVA N A +D ++ YL+ ++ L +V++ +LR+A +E++ R+DVP K AINEAI Sbjct: 57 ELVNGVAENKAAIDERLQHYLTGWQVDRLSRVDRQILRLAYFEIAYRNDVPPKAAINEAI 116 Query: 109 ELAKSFGAEDSHKFVNGVLDK 129 ELAK FG E+S KFVNGVL K Sbjct: 117 ELAKHFGTEESGKFVNGVLGK 137 >UniRef50_C0N8C8 Transcription antitermination factor NusB n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N8C8_9GAMM Length = 150 Score = 95.9 bits (237), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 50/133 (37%), Positives = 75/133 (56%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R +AR AVQALY ++ +F+ + +D YF L+ G +D Sbjct: 7 RTKARRAAVQALYQALVNNETPQKAGLEFVTAEYADKIDRKYFTTLIEGTIKYQQAIDAE 66 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 + + R L + VE +VLR+A++E ++PY+V +NEA+ELAKSFG E HK+VNG Sbjct: 67 LSEAVDRDLNAVDPVEISVLRLAVFEFMHLPEIPYRVVLNEAVELAKSFGGEQGHKYVNG 126 Query: 126 VLDKAAPVIRPNK 138 VLDK +RP++ Sbjct: 127 VLDKMGARLRPHE 139 >UniRef50_Q0F2C5 Transcription antitermination protein NusB n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F2C5_9PROT Length = 145 Score = 95.1 bits (235), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 51/137 (37%), Positives = 80/137 (58%), Gaps = 4/137 (2%) Query: 4 AARRRARECAVQALYSWQLSQND---IADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 A R +ARE ++ LY+W +Q D I ++ L ++ D D Y RE + G+ +T Sbjct: 2 ANRHQARESVLETLYAWSSAQQDSGMIPELLASRLQHEERADQDESYLREAVYGITDHTD 61 Query: 61 YLDGLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 LD L+K + R L + Q+E V+R+A++E+ R ++PY+V INEA+EL + + E Sbjct: 62 ALDELIKTAVRGRSLRSVAQIEINVIRLAVWEMQNRLEIPYRVIINEALELTRDYAGEPP 121 Query: 120 HKFVNGVLDKAAPVIRP 136 F+NGVLD A +RP Sbjct: 122 RGFINGVLDNLAKQLRP 138 >UniRef50_UPI00006A2BCA UPI00006A2BCA related cluster n=1 Tax=Xenopus (Silurana) tropicalis RepID=UPI00006A2BCA Length = 151 Score = 95.1 bits (235), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 52/132 (39%), Positives = 70/132 (53%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +AR RARE A+QALY + +N+ + ++ D ++ LL G LD Sbjct: 12 SARSRAREFALQALYQHLVGRNEASAIDLFTRDLAGFHKADAAHYDALLHGCVRTEDALD 71 Query: 64 GLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 L+ P L R L +E AV+ I YE DVP++V +NE IELAK FG D HK+V Sbjct: 72 ALIVPQLDRPLAAFSPIEHAVMWIGAYEFQHCMDVPWRVTLNECIELAKEFGGTDGHKYV 131 Query: 124 NGVLDKAAPVIR 135 N VL AP +R Sbjct: 132 NAVLGGLAPRLR 143 >UniRef50_A0L3Z8 NusB antitermination factor n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L3Z8_MAGSM Length = 165 Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 47/136 (34%), Positives = 80/136 (58%), Gaps = 1/136 (0%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 M+ R ++RE A+Q LY +++ + + L + + +D YF +L GV Sbjct: 15 MRRGGRSKSREIALQVLYGCEIAHDPVGPALRNMLEDPHSEGMDQDYFSQLTLGVEAERE 74 Query: 61 YLDGLM-KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 LD + + + ++ V+ +LR+ +YEL K+ +VP++V +NEAIEL+K FG E+S Sbjct: 75 VLDSWIGRAGAAWSMDRFSVVDHNILRLGIYELLKQPEVPHRVILNEAIELSKRFGGEES 134 Query: 120 HKFVNGVLDKAAPVIR 135 +FVNGV+DK A ++R Sbjct: 135 SRFVNGVMDKVANLVR 150 >UniRef50_Q30YL1 N utilization substance protein B homolog n=5 Tax=Desulfovibrionales RepID=NUSB_DESDG Length = 154 Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 54/138 (39%), Positives = 80/138 (57%), Gaps = 7/138 (5%) Query: 4 AARRRARECAVQALYSWQLS-QNDIADVEYQFLAEQDVKDVD-----VLYFRELLAGVAT 57 ++RR +R A Q LY S D+A ++ + A DV D V + EL+ G T Sbjct: 8 SSRRSSRALAFQVLYGLNFSPAKDLAQLQEAYCASPDVSDRGGEAHPVGFAWELIEGTWT 67 Query: 58 NTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 N LD ++ + +E +G++E +LR+A+YE+ R+DVP KVAINE IEL+K FG Sbjct: 68 NQKALDEIITRFAQNWRVERIGKIELTILRLAVYEMLYRADVPPKVAINEGIELSKQFGD 127 Query: 117 EDSHKFVNGVLDKAAPVI 134 + S F+NG+LD AA + Sbjct: 128 DKSRNFINGILDAAAKAL 145 >UniRef50_Q1D350 N utilization substance protein B homolog n=2 Tax=Cystobacterineae RepID=NUSB_MYXXD Length = 140 Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 51/133 (38%), Positives = 83/133 (62%), Gaps = 5/133 (3%) Query: 4 AARRRARECAVQALYSWQLSQNDIADV---EYQFLAEQDVKDVDVLYF-RELLAGVATNT 59 ARR RE A+QALY +++ A+ + E + +D D + F REL+ GV ++ Sbjct: 2 GARRTGRERALQALYQLEMATATTAEALESAWSAAEESNKRDPDAVKFARELVEGVQSHR 61 Query: 60 AYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 +D L++ + L+ + ++++ VLR+ ++EL R D+P KV+INEA+EL K+FG E+ Sbjct: 62 DEIDQLIERHSHNWRLDRMSRIDRNVLRLGIFELKYRPDIPRKVSINEAVELGKNFGNEE 121 Query: 119 SHKFVNGVLDKAA 131 S FVNG+LD+ A Sbjct: 122 SSAFVNGLLDRVA 134 >UniRef50_A5FQ51 N utilization substance protein B homolog n=5 Tax=Dehalococcoides RepID=NUSB_DEHSB Length = 143 Score = 91.7 bits (226), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 50/132 (37%), Positives = 79/132 (59%), Gaps = 1/132 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +RR+ARE +QALY L+ ++ DV + L E + +V + L V + LD Sbjct: 3 TSRRKAREIVLQALYEQDLAGHNAEDVLKRLLTENPQTEENVEFIFRLTNAVVKHKDLLD 62 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ + S +E+L +++ VLR+A++E+ +DVP KVAINEA+ELAKSFG S +F Sbjct: 63 ENIRQFASAWPVEQLSYIDRNVLRLAIFEIIHENDVPVKVAINEAVELAKSFGGNSSARF 122 Query: 123 VNGVLDKAAPVI 134 +NGVL + + Sbjct: 123 INGVLSSVSKAL 134 >UniRef50_UPI0001699525 transcription antitermination protein NusB n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001699525 Length = 182 Score = 91.3 bits (225), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 45/110 (40%), Positives = 67/110 (60%), Gaps = 4/110 (3%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R +AR AVQA+Y WQ++ D+A + QFL EQD+ +V YF++LL GV N LDGL Sbjct: 5 RSQARRHAVQAIYQWQMAGQDLAAIYEQFLGEQDLSQFEVPYFKDLLHGVPNNLQELDGL 64 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG 115 +KP L R +E + VE+AVLR+ +Y++ + P+ A+ + G Sbjct: 65 LKPALDRAIESVDPVERAVLRLGVYDV----ETPHGGALPSGDQRGGGVG 110 >UniRef50_C0GE32 NusB antitermination factor n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GE32_9FIRM Length = 138 Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 48/128 (37%), Positives = 78/128 (60%), Gaps = 1/128 (0%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 +RR ARE A + L+ + + +N++ Q + E ++ V + R+L+ G N +D Sbjct: 2 SRRLAREIAFKTLFQYDIGKNEVEPTISQLIEENGLEGAGVEFSRQLVLGTLKNLEAIDK 61 Query: 65 LMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 + YL + L L V++ VLR+A +E+ R D+P V INEA+EL+K+F +E++ KF+ Sbjct: 62 ALAGYLQKWELGRLAAVDRNVLRLAAFEILYREDIPAAVTINEALELSKAFHSEEAAKFL 121 Query: 124 NGVLDKAA 131 NGVLDK A Sbjct: 122 NGVLDKLA 129 >UniRef50_C8PUW0 NusB antitermination factor n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PUW0_9GAMM Length = 186 Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 50/132 (37%), Positives = 76/132 (57%), Gaps = 8/132 (6%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNT---- 59 A R+AR VQ LY W L+ N ++E +E + V + Y+ ELL+ + + Sbjct: 26 TAIRKARRFVVQGLYEWLLTGNPSHEIEAHTRSENAMHTVHLGYYHELLSKIIEQSDDLI 85 Query: 60 AYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 AY+D L L+R L +VE+AVL + YE+ + +VPYKV I+EAI+L FG+ D Sbjct: 86 AYIDSL----LNRPWTRLDKVEQAVLLVGAYEMKQHLEVPYKVVIDEAIQLNTHFGSSDG 141 Query: 120 HKFVNGVLDKAA 131 +K ++ V+DK A Sbjct: 142 YKMIHVVMDKIA 153 >UniRef50_C0GMV1 NusB antitermination factor n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GMV1_9DELT Length = 157 Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 53/135 (39%), Positives = 74/135 (54%), Gaps = 4/135 (2%) Query: 5 ARRRARECAVQALYSWQLSQN--DIADVEYQFLAEQDVK-DVDVLYFRELLAGVATNTAY 61 +R RE A Q LYS Q I D + F +QD D+ Y +L+ GV N Sbjct: 13 SRHAQREFAFQVLYSLHFDQTGTHILDTFHHFKNDQDTAVQQDMSYALQLINGVRENLEE 72 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD + + ++ + VE ++R+A+YE+ R D+P KV INEAIELAK+FG +S Sbjct: 73 LDAAIGRHSQNWKVKRIAMVELTIMRLAVYEMIYREDIPVKVGINEAIELAKTFGDNNSR 132 Query: 121 KFVNGVLDKAAPVIR 135 FVNG+LD A +R Sbjct: 133 NFVNGILDAVARDMR 147 >UniRef50_C1I679 NusB antitermination factor n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I679_9CLOT Length = 134 Score = 88.2 bits (217), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 50/128 (39%), Positives = 79/128 (61%), Gaps = 3/128 (2%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLA--EQDVKDVDVLYFRELLAGVATNTAYLD 63 R+R+RE A++ L+ LS+N + + F+ E ++K +D+ Y + +LA V N +D Sbjct: 3 RKRSREIAMELLFGMTLSKNTLEETIETFIEDYEMNLKTIDLEYIKGILAKVEENITVID 62 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ L+ ++ + +V ++LR+A+ E+ DVP KVAINEAIEL K + E S F Sbjct: 63 QKIEEALTNWKIDRVSKVNISILRLAIAEMLYVEDVPEKVAINEAIELTKKYSDEKSVSF 122 Query: 123 VNGVLDKA 130 VNGVLDKA Sbjct: 123 VNGVLDKA 130 >UniRef50_A3DDP0 N utilization substance protein B homolog n=5 Tax=Clostridium RepID=NUSB_CLOTH Length = 145 Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 44/130 (33%), Positives = 78/130 (60%), Gaps = 1/130 (0%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 RR +RE A++ +Y ++ ++ + L + D+ + D Y +++ GV N +DG Sbjct: 2 GRRASREIAMKLIYQLEIQKDSREEQINNTLEQYDLNENDREYILDVVKGVFKNQEEIDG 61 Query: 65 LMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 ++ + L + +V+ A+LR+A+YE+ R D+P+ VAINEA+ELAK++ E+S F+ Sbjct: 62 TIEKFSKGWKLSRISKVDLAILRLAIYEMCHRDDIPFTVAINEAVELAKNYSGEESGSFI 121 Query: 124 NGVLDKAAPV 133 NG+L K V Sbjct: 122 NGILGKVVKV 131 >UniRef50_A7HDY2 N utilization substance protein B homolog n=4 Tax=Anaeromyxobacter RepID=NUSB_ANADF Length = 143 Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 56/136 (41%), Positives = 83/136 (61%), Gaps = 3/136 (2%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRE-LLAGVATNTAYLDG 64 R RARE A+QALY ++ I D +F + + +V+ E + GVA + +D Sbjct: 5 RTRARERALQALYQIDVAAEGIDDALSRFWKSFEPVEREVMEDAEGFVRGVAAHRRTIDD 64 Query: 65 LMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 ++ + L+ + +V++ VLR+A+YEL R+DVP KVAINEAIEL K +G+E S FV Sbjct: 65 TIEGVSTNWRLDRMAKVDRNVLRLAVYELL-RTDVPVKVAINEAIELGKKYGSESSGAFV 123 Query: 124 NGVLDKAAPVIRPNKK 139 NGVLDK A + P ++ Sbjct: 124 NGVLDKVAAGLPPERR 139 >UniRef50_A0Q099 N utilization substance protein B homolog n=3 Tax=Clostridium RepID=NUSB_CLONN Length = 133 Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 43/125 (34%), Positives = 79/125 (63%), Gaps = 3/125 (2%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQD--VKDVDVLYFRELLAGVATNTAYLD 63 RR++RE A++ L+ +++ + +++ F D +++VD +Y +++ G+ N +D Sbjct: 3 RRKSREVAMKLLFEMSINKEEFSEILKNFKENTDTNMENVDFIYINKIVNGIEQNKEDID 62 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ L++ L L +++ +LRI+ YE+ D+P KVA+NEAIELAK + A++S F Sbjct: 63 KKIEENLTKWKLNRLSKIDLTILRISTYEIMFMEDIPNKVAVNEAIELAKKYSADNSPAF 122 Query: 123 VNGVL 127 VNGVL Sbjct: 123 VNGVL 127 >UniRef50_C5S6Y6 NusB antitermination factor n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S6Y6_CHRVI Length = 171 Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 51/150 (34%), Positives = 78/150 (52%), Gaps = 22/150 (14%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFL----------------------AEQDVK 41 + R ++R A ALY W+L+ +D ++ L A +D Sbjct: 11 SPRSQSRRYAALALYQWRLTGDDPMAIKRHLLDDPKWLDAVAASLNGVSDEDELAAEDRF 70 Query: 42 DVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYK 101 + +V ELL GV T+ +D + +L R + ++ VE A+LR+ YE+ ++P + Sbjct: 71 NFNVELLDELLNGVPTHIDAIDAQLDRFLDRPISQVDPVELAILRLGAYEILFSDNIPDR 130 Query: 102 VAINEAIELAKSFGAEDSHKFVNGVLDKAA 131 VAINEA+EL K GA + HK+VNGVLDK A Sbjct: 131 VAINEAVELTKLLGAHEGHKYVNGVLDKIA 160 >UniRef50_A5WHT3 NusB antitermination factor n=1 Tax=Psychrobacter sp. PRwf-1 RepID=A5WHT3_PSYWF Length = 252 Score = 85.5 bits (210), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 50/145 (34%), Positives = 76/145 (52%), Gaps = 13/145 (8%) Query: 4 AARRRARECAVQALYSW--------QLSQ-----NDIADVEYQFLAEQDVKDVDVLYFRE 50 AA R+AR A+Q LY W Q+ Q N D+ + A + V + Y+ Sbjct: 35 AAVRKARRFALQGLYEWLMTDHRFEQMGQGEWKANPPHDIAARTRATNAMHTVHLGYYHT 94 Query: 51 LLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIEL 110 L+ + L+ L+ +L R ++++ VE AVL I YEL +PYKV ++EA++L Sbjct: 95 LMREIPEQITDLEALIAQHLDRAIDKIDMVEHAVLLIGAYELKNSLHIPYKVVLDEAMKL 154 Query: 111 AKSFGAEDSHKFVNGVLDKAAPVIR 135 FGA D+HK +N V+DK A +R Sbjct: 155 NTHFGATDAHKLINAVMDKLAAQLR 179 >UniRef50_A6LU43 N utilization substance protein B homolog n=6 Tax=Clostridium RepID=NUSB_CLOB8 Length = 133 Score = 85.1 bits (209), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 47/127 (37%), Positives = 78/127 (61%), Gaps = 3/127 (2%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLA--EQDVKDVDVLYFRELLAGVATNTAYLD 63 R+ +RE A++ L+ LS++ + D F+ E D+K++D+ Y +++L GV N +D Sbjct: 3 RKLSREKAMELLFGMTLSKDTMEDAVEAFVENYEGDIKEIDLTYVKQVLIGVNNNKEAID 62 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 +++ L +E + +V ++LRIA YEL +VP VAINEA+E+ + + E S F Sbjct: 63 KVIQENLHNWKIERISKVNLSILRIATYELLYDKEVPRGVAINEALEITRRYSDEKSVSF 122 Query: 123 VNGVLDK 129 +NGVLDK Sbjct: 123 INGVLDK 129 >UniRef50_C0ZC03 N utilization substance protein B n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZC03_BREBN Length = 137 Score = 84.7 bits (208), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 50/128 (39%), Positives = 71/128 (55%), Gaps = 4/128 (3%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 M RR ARE VQ L+ +++ + D + E + + Y R LL GV N Sbjct: 1 MNGMKRRTAREKVVQCLFQIDMAEVPLTDAVALVMEE---SEENAQYLRYLLDGVLKNLT 57 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D +K YL LE + V++A+LR+A YE+ D P KV +NEAIE+AK F E S Sbjct: 58 EIDAEIKKYLRGWQLERIANVDRAILRLAFYEIMFEQDTPDKVVMNEAIEVAKLFSDEQS 117 Query: 120 HKFVNGVL 127 H+++NGVL Sbjct: 118 HRYINGVL 125 >UniRef50_B6BUY9 Transcription antitermination factor NusB n=1 Tax=beta proteobacterium KB13 RepID=B6BUY9_9PROT Length = 127 Score = 84.7 bits (208), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 42/122 (34%), Positives = 72/122 (59%) Query: 14 VQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL 73 ++++Y ++ D D++ L + D D ++ L+ G+ N + + ++ + Sbjct: 1 MKSIYRGIMNTFDYTDIKKDILEDPDYCRCDEEFYNSLIDGIKENYQEILEDLDNFMDKK 60 Query: 74 LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPV 133 EEL +E ++L +A YEL R D+P+KV+INEA+E+ KSFG ++S KFVNG LD+ A Sbjct: 61 KEELNPIELSILVVAYYELKTRVDIPFKVSINEALEITKSFGGQESFKFVNGSLDRVAKK 120 Query: 134 IR 135 R Sbjct: 121 YR 122 >UniRef50_Q4FPZ1 N utilization substance protein B homolog n=19 Tax=Moraxellaceae RepID=NUSB_PSYA2 Length = 375 Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 74/142 (52%), Gaps = 13/142 (9%) Query: 7 RRARECAVQALYSWQLSQ-------------NDIADVEYQFLAEQDVKDVDVLYFRELLA 53 R+AR A+Q LY W ++ N D+ + A + V + Y+ E++ Sbjct: 52 RKARRFAMQGLYEWLVTDRRFDIDGKLGWKANAPHDIAARTRATNAMHTVHIGYYHEMMR 111 Query: 54 GVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKS 113 + L+ L+ L R + +L VE A+L I YEL R ++PYKV ++EA++L Sbjct: 112 DIPEQIDALNTLITQQLDREINKLDTVEHAILLIGAYELQNRLEIPYKVVLDEAMKLNNH 171 Query: 114 FGAEDSHKFVNGVLDKAAPVIR 135 FGA D+HK +N VLD+ A +R Sbjct: 172 FGATDAHKLINAVLDRMAVELR 193 >UniRef50_UPI00019779AE transcription antitermination protein NusB n=1 Tax=Helicobacter cinaedi CCUG 18818 RepID=UPI00019779AE Length = 165 Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 55/139 (39%), Positives = 74/139 (53%), Gaps = 5/139 (3%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 A R +ARE + LY++ L DI D+ E+ +K+ + LL G TN +D Sbjct: 2 ATRTQAREAVIGMLYAYDLGNKDILDIARSMFEEKKIKNKQQDFAFLLLQGAITNLQSID 61 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYE-LSKRSDVPYKVAINEAIELAKSFGAEDSH- 120 + PYL LG +EKAVLR+ YE L +D P V INEAIEL K +G ED+ Sbjct: 62 EAIIPYLKEWDFSRLGGMEKAVLRLGAYEILYTDTDSP--VVINEAIELGKMYGGEDNTP 119 Query: 121 KFVNGVLDKAAPVIRPNKK 139 +F+NGVLD + R K Sbjct: 120 RFLNGVLDALSKAHRQMSK 138 >UniRef50_A8FF16 N utilization substance protein B homolog n=28 Tax=Bacillales RepID=NUSB_BACP2 Length = 131 Score = 82.4 bits (202), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 48/123 (39%), Positives = 73/123 (59%), Gaps = 5/123 (4%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 RR ARE A+Q L+ +S D + L EQ+ +F EL+ GV LD + Sbjct: 3 RRTAREKALQTLFQIDVSNIDPKEAITHALDEQESDP----FFEELVFGVLEQKDKLDDM 58 Query: 66 MKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + +L L+ + V++A+LR+++YE+ + D+P V++NEAIELAK FG + + KFVN Sbjct: 59 ISQHLVNWKLDRIANVDRAILRLSVYEMVYQEDIPVSVSMNEAIELAKLFGDDKAPKFVN 118 Query: 125 GVL 127 GVL Sbjct: 119 GVL 121 >UniRef50_B8FQ61 N utilization substance protein B homolog n=2 Tax=Desulfitobacterium hafniense RepID=NUSB_DESHD Length = 148 Score = 82.0 bits (201), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 50/138 (36%), Positives = 80/138 (57%), Gaps = 5/138 (3%) Query: 5 ARRRARECAVQALYSWQLS--QNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 +RR ARE A+Q L+ +++ D+ +++ E V + + + EL G T+ + Sbjct: 2 SRRLARETALQVLFQLEMTGESQDLKSAIHKWADEFAVPEGSIPFAEELAEGTLTHKEVI 61 Query: 63 D-GLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D L K L + V++ +LR+A YE+ R D+P +V INEAIE+AK +G+E+S K Sbjct: 62 DENLEKLSEGWSLARMANVDRNLLRLASYEILFRKDIPGRVTINEAIEIAKRYGSEESGK 121 Query: 122 FVNGVLDKAAPVIRPNKK 139 F+NG+LDK + NKK Sbjct: 122 FINGILDKVVESV--NKK 137 >UniRef50_A4XLC1 N utilization substance protein B homolog n=2 Tax=Clostridia RepID=NUSB_CALS8 Length = 142 Score = 82.0 bits (201), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 46/136 (33%), Positives = 78/136 (57%), Gaps = 14/136 (10%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEY-----QFLAEQDVKDVDVLYFRELLAGVATNTA 60 RR+ RE ++ LY+++ N+ +E+ + +++ K++D Y ++LL GV N Sbjct: 4 RRKTRELCMKILYAYRFQNNEYDIIEFLNKFKELNPDENFKEIDEEYLKKLLTGVIRNQQ 63 Query: 61 YLDGLMKPY-----LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG 115 +D L++ Y LSR+ VE ++RIA+YEL ++P VAI+EA++L+ FG Sbjct: 64 LIDNLIEKYSKDWPLSRI----PMVELELMRIAIYELLFEEEIPISVAIDEAVDLSSIFG 119 Query: 116 AEDSHKFVNGVLDKAA 131 E + FVNG+L A Sbjct: 120 VEKAPSFVNGILGSIA 135 >UniRef50_D1CCN3 NusB antitermination factor n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CCN3_THET1 Length = 153 Score = 82.0 bits (201), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 47/130 (36%), Positives = 78/130 (60%), Gaps = 1/130 (0%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R +AR A+Q LY + ++ ++ + E+++ + Y +L GV N D L Sbjct: 12 RHQARALAMQVLYEAETTRKQPYEILQRRRNEENIPEQVHAYASDLAIGVWQNRKEYDSL 71 Query: 66 MKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + + + ++++ +V++ +LRIA++E+ +R+DVP AINEA+ELAK +GAE S KFVN Sbjct: 72 ITRFTPTWTIDQMAKVDRNILRIAVHEMLRRNDVPIAAAINEAVELAKEYGAEASPKFVN 131 Query: 125 GVLDKAAPVI 134 GVL A I Sbjct: 132 GVLGAIADAI 141 >UniRef50_C8WXH1 NusB antitermination factor n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WXH1_ALIAD Length = 166 Score = 81.6 bits (200), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 53/138 (38%), Positives = 77/138 (55%), Gaps = 5/138 (3%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEY--QFLAEQDVK-DVDVLYFRELLAGVATNTAYL 62 R ARECA+QAL + Q D+ E LAE+ D Y EL+ G + + Sbjct: 3 RHEARECALQALCVLDV-QRDLGSAEAIASALAERGTDAGGDFTYIEELVDGTRRHLDEI 61 Query: 63 DGLMKPYLSRLL-EELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D L+ ++ R E +G+VE+ VLR+A YEL ++P AI+EA+E+AK+F E S + Sbjct: 62 DELLARHMERWSPERIGRVERNVLRLATYELLFEPELPIASAIDEAVEIAKTFATEQSGR 121 Query: 122 FVNGVLDKAAPVIRPNKK 139 FVNGVL K P + ++ Sbjct: 122 FVNGVLAKLLPAVADRRR 139 >UniRef50_C1QBG1 Transcription antitermination factor NusB n=1 Tax=Brachyspira murdochii DSM 12563 RepID=C1QBG1_9SPIR Length = 187 Score = 81.6 bits (200), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 45/131 (34%), Positives = 80/131 (61%), Gaps = 10/131 (7%) Query: 4 AARRRARECAVQALYSWQLSQ-----NDIADVEYQFLAEQDVKDVDVLYFRELLAGVATN 58 ARR+AR AV +LYS+++++ N+I D +Y +++ + R L+ G N Sbjct: 53 GARRQARIYAVMSLYSYEINERKISINNILDFDYDKKIPENI----FAFTRNLVEGTIKN 108 Query: 59 TAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 +D L++ Y + ++ + V+K+++R+++Y L D+P V I+EA+E+AK F + Sbjct: 109 LERIDSLIEKYSNNWDIKRIQYVDKSIIRMSIYSLIFLKDIPKSVVIDEAVEIAKIFSDK 168 Query: 118 DSHKFVNGVLD 128 DS+KFVNG+LD Sbjct: 169 DSYKFVNGILD 179 >UniRef50_Q2RIA9 N utilization substance protein B homolog n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=NUSB_MOOTA Length = 145 Score = 81.3 bits (199), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 47/126 (37%), Positives = 73/126 (57%), Gaps = 1/126 (0%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 RR AR A+QAL++ + Q L E ++ + + REL+ G +D + Sbjct: 3 RRAARAKALQALFAIDVGGTSPDMALEQVLEEGELPPRAMTFTRELVEGTMAKRDAIDAI 62 Query: 66 MKPY-LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 ++ Y + LE L V++ +LR+ALYE+ + P +V INEAIELAK+F E++ +FVN Sbjct: 63 IRKYAVGWRLERLAAVDRNILRMALYEMQYHRETPVRVVINEAIELAKNFNNEEAGRFVN 122 Query: 125 GVLDKA 130 G+LD A Sbjct: 123 GLLDNA 128 >UniRef50_B7DR17 NusB antitermination factor n=1 Tax=Alicyclobacillus acidocaldarius LAA1 RepID=B7DR17_9BACL Length = 165 Score = 81.3 bits (199), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 52/138 (37%), Positives = 78/138 (56%), Gaps = 5/138 (3%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEY--QFLAEQDVK-DVDVLYFRELLAGVATNTAYL 62 R ARECA+QAL + Q D+ E LAE+ + D Y EL+ G + + Sbjct: 3 RHEARECALQALCVLDV-QRDLGSAEAIASVLAERGLDAGGDWAYIEELVDGTRRHLGEI 61 Query: 63 DGLMKPYLSRLL-EELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D L+ ++ R E +G+VE+ VLR+A YEL ++P AI+EA+++AK+F E S + Sbjct: 62 DELLARHMERWSPERIGRVERNVLRLATYELLFEPELPIASAIDEAVQIAKTFATEQSGR 121 Query: 122 FVNGVLDKAAPVIRPNKK 139 FVNGVL K P + ++ Sbjct: 122 FVNGVLAKLLPAVADRRR 139 >UniRef50_B1LAQ8 N utilization substance protein B homolog n=10 Tax=Thermotogaceae RepID=NUSB_THESQ Length = 142 Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 51/143 (35%), Positives = 76/143 (53%), Gaps = 17/143 (11%) Query: 6 RRRARECAVQALYSWQLSQND--------IADVEYQFLAEQDVKDVDVLYFRELLAGVAT 57 RRR R +AL+ + +++ I D Y A++D R + G+ Sbjct: 5 RRRMRLAVFKALFQHEFRRDEDLEQILEEILDETYDKKAKEDA--------RRYIRGIKE 56 Query: 58 NTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 N +D L+ YL + L L V++ VLR+A YEL D+P +V I+EAIE+AK +G Sbjct: 57 NLPMIDNLISRYLEKWSLNRLSAVDRNVLRLATYELLFEKDIPIEVTIDEAIEIAKRYGT 116 Query: 117 EDSHKFVNGVLDKAAPVIRPNKK 139 E+S KFVNG+LD+ A P +K Sbjct: 117 ENSGKFVNGILDRIAKEHAPKEK 139 >UniRef50_A8ZTU6 N utilization substance protein B homolog n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=NUSB_DESOH Length = 154 Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 4/130 (3%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEY---QFLAEQDVKDVDVLYFRELLAGVATNTA 60 A+RRR+RE A+Q L+S+ L+ D + F A ++ + + +F L GV Sbjct: 2 ASRRRSRELALQFLFSYDLNAAGAGDFDAWMEDFCARFNLSEKNFPHFFTLAQGVKNRWE 61 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 L+ L+ L + V++ V+RIA++E+ DVP +VAINEAIE+ K +G ++S Sbjct: 62 KLNDLLAESSEHWKLSRMSGVDRNVMRIAIFEMLYCDDVPPRVAINEAIEIGKKYGTDES 121 Query: 120 HKFVNGVLDK 129 F+NGVLD+ Sbjct: 122 GAFINGVLDR 131 >UniRef50_B5YHQ2 N utilization substance protein B homolog n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=NUSB_THEYD Length = 151 Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 44/138 (31%), Positives = 82/138 (59%), Gaps = 11/138 (7%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQ---------DVKDVDVLYF-RELLAGV 55 RR+ARE +Q LY+ ++++N Y FL E+ + ++ D+ F +L+ G Sbjct: 3 RRKAREYVLQFLYACEMNENTQKICNYNFLQEEIEKFWERNYEEQNSDIKSFANQLIEGT 62 Query: 56 ATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 + +D +++ Y + +E + ++K +LR ++YE+ R D+PY+V INEA+E+AK + Sbjct: 63 IEHIDIIDKIIQKYADKWNIERMITIDKNILRFSIYEILYRQDIPYQVTINEAVEIAKKY 122 Query: 115 GAEDSHKFVNGVLDKAAP 132 ++S F+NG+LD+ A Sbjct: 123 STKESAAFINGILDRIAK 140 >UniRef50_D2LH50 NusB antitermination factor n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LH50_RHOVA Length = 185 Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 48/133 (36%), Positives = 76/133 (57%), Gaps = 7/133 (5%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAE-----QDVKDVDVLYFRELLAGVATNTA 60 R RAR AVQALY +++Q D++ V +FL + D +FR+++ G+A A Sbjct: 21 RTRARLAAVQALYQMEMTQRDLSLVLQEFLGRRFETVEIYAGADRSFFRDIVEGIARGQA 80 Query: 61 YLDGLMKPYLSRL--LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 +D + +L+ L + + +A+LR +YEL+ R+DVP + INE +E+AK F + Sbjct: 81 KIDLEIAAHLASGWKLSRIDSILRAILRSGVYELTDRNDVPARAVINEYVEIAKDFFGGE 140 Query: 119 SHKFVNGVLDKAA 131 VNGVLD+ A Sbjct: 141 EPGVVNGVLDRVA 153 >UniRef50_UPI0001C42A93 transcription antitermination protein NusB n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42A93 Length = 135 Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 76/135 (56%), Gaps = 4/135 (2%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 RR AR A QALY L+ +++ L + + + +F +L+ G +D Sbjct: 3 RRLARLRAAQALYQMDLTGSEMESAIESVLEDNEKQSE---FFTQLVQGTTELKTKIDET 59 Query: 66 MKPYLSR-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + L + +G V++A++R+A+YE+ + D+P V NEAIELAK+FG E++ +FVN Sbjct: 60 ISANLEGWTISRMGHVDRAIIRMAMYEMLEVEDIPVNVTFNEAIELAKAFGGEEAGRFVN 119 Query: 125 GVLDKAAPVIRPNKK 139 GVL K+ + ++K Sbjct: 120 GVLSKSIETLNLDRK 134 >UniRef50_C9R7W0 NusB antitermination factor n=1 Tax=Ammonifex degensii KC4 RepID=C9R7W0_AMMDK Length = 155 Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 48/128 (37%), Positives = 74/128 (57%), Gaps = 1/128 (0%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 +RRRARE A+ L+ + + + LAE + + + L+ G +D Sbjct: 2 SRRRAREAALMVLFQVDVGGAVPEEALERTLAEWRLGNASREFATSLVLGTLAYRPQIDR 61 Query: 65 LMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 +++ R LE + +V++ V+R+ALYEL R D+P VAINEA+ELAK +G E+S +FV Sbjct: 62 VIEELSQRWRLERMNRVDRNVMRLALYELLFRQDIPPAVAINEAVELAKRYGGEESPRFV 121 Query: 124 NGVLDKAA 131 NG+L K A Sbjct: 122 NGILGKVA 129 >UniRef50_Q3A4L2 N utilization substance protein B homolog n=2 Tax=Desulfuromonadales RepID=NUSB_PELCD Length = 156 Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 50/154 (32%), Positives = 79/154 (51%), Gaps = 20/154 (12%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVL-------------- 46 M RR RE A++ +YS+ + + F + +D DVL Sbjct: 1 MASGMRRTGRELAIKIIYSFD-GTGSVEALLATFWSNFRFRD-DVLGEPLEDSSQAVAEP 58 Query: 47 ---YFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKV 102 + +L+ GVA N +DGL+ + + LE + +V+ A+LR+A YEL DVP V Sbjct: 59 VREFAEDLVRGVAENLEKIDGLIGEFSTNWSLERMARVDLAILRMATYELLGHLDVPVSV 118 Query: 103 AINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRP 136 INEA+E+ K +G +++ FVNG+LD+ + RP Sbjct: 119 IINEAVEIGKRYGTKETPSFVNGILDRISRTCRP 152 >UniRef50_B3U4H5 Transcription antitermination protein n=1 Tax=Candidatus Nitrospira defluvii RepID=B3U4H5_9BACT Length = 157 Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 48/130 (36%), Positives = 77/130 (59%), Gaps = 8/130 (6%) Query: 4 AARRRARECAVQALYSWQLSQND---IADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 A+R +ARE AVQ L+ + + + D Q+ ++++ ++ L+AGV N Sbjct: 2 ASRHQARERAVQILFQYDIHGQAGPWLDDFWIQYPLAEELR----VFAERLVAGVRANKK 57 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 LD L+ Y + + + +++ +LR+ +EL +VP KV +NEAIELAKSFG E++ Sbjct: 58 ELDALIGTYATNWKVSRMPIIDRNILRMGCFELLHVPEVPAKVTLNEAIELAKSFGDEEA 117 Query: 120 HKFVNGVLDK 129 KFVNG+LDK Sbjct: 118 SKFVNGILDK 127 >UniRef50_D1BMJ1 NusB antitermination factor n=3 Tax=Veillonella RepID=D1BMJ1_VEIPT Length = 134 Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 46/127 (36%), Positives = 78/127 (61%), Gaps = 9/127 (7%) Query: 6 RRRARECAVQALYS--WQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 RR AR+ A Q LY+ + QND+ QF K +D Y ++ GV +N +D Sbjct: 7 RREARQYAFQMLYANEFHTDQNDV-----QFPEGNIHKAMDKAYANSIIEGVLSNAEAID 61 Query: 64 GLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSD-VPYKVAINEAIELAKSFGAEDSHK 121 ++P+ SR + L +V++++LRIA++E++ + + + +AINEAI+LAK FG++ S+K Sbjct: 62 ATLQPFCKSRKVANLDKVDRSILRIAVWEMNNKVEPLEPSIAINEAIQLAKEFGSDASYK 121 Query: 122 FVNGVLD 128 +N +LD Sbjct: 122 LINAILD 128 >UniRef50_B6WQ80 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WQ80_9DELT Length = 157 Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 51/140 (36%), Positives = 77/140 (55%), Gaps = 7/140 (5%) Query: 2 KPAARRRARECAVQALYSWQLSQ-NDIADVEYQFLAEQDVKDVD-----VLYFRELLAGV 55 K A+RR R A Q LY + + DV FL D ++ + + +L+ GV Sbjct: 5 KSASRRGERAQAFQVLYGLSFADATSLEDVRRAFLQSPDHQESEEGELPSGFSWDLVQGV 64 Query: 56 ATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 + LD + + ++ +G+VE +LR+A+YEL R DVP KVAINEA+EL + F Sbjct: 65 WSRRDELDKTISRFSRNWRVDRMGRVELTLLRLAMYELLYRQDVPAKVAINEALELTRQF 124 Query: 115 GAEDSHKFVNGVLDKAAPVI 134 G +++ FVNG+LD AA + Sbjct: 125 GEDNATSFVNGILDAAAKAL 144 >UniRef50_A5G3J8 N utilization substance protein B homolog n=7 Tax=Desulfuromonadales RepID=NUSB_GEOUR Length = 145 Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 51/145 (35%), Positives = 80/145 (55%), Gaps = 10/145 (6%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAE--------QDVKDVDVLYFRELLAGV 55 ++RR RE A+QALYS + D V + + D + EL+ GV Sbjct: 2 SSRREGRELALQALYSSDVEVMDGTTVLKRIMENFGDGSEPAVDAHSRSFSFAAELVNGV 61 Query: 56 ATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 N A +D ++ + + +V+ +LR+A++EL R D+P V INEAIE+AK F Sbjct: 62 VANRAAIDQRIEEKSKNWSISRMARVDLNILRLAVFELFYRPDIPKNVTINEAIEVAKKF 121 Query: 115 GAEDSHKFVNGVLDKAAPVIRPNKK 139 GA+DS F+NG+LD+ A ++ P+K+ Sbjct: 122 GADDSPAFINGILDEIASLL-PDKE 145 >UniRef50_B7IXH3 N utilization substance protein B homolog n=82 Tax=Bacillales RepID=NUSB_BACC2 Length = 130 Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 44/125 (35%), Positives = 75/125 (60%), Gaps = 7/125 (5%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVL--YFRELLAGVATNTAYLD 63 RR ARE A+QALY ++ ++E + E + + + + L+ G N +D Sbjct: 3 RRTARERAMQALYQMDIT----GELEPKVAVENTLDEGEETNEFLESLVVGFVENKEAID 58 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ L + LE + V++++LR+A+YE+ ++P+ V INEAIE+AK+FG E+S +F Sbjct: 59 EAIRQNLKKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIEIAKTFGDEESRRF 118 Query: 123 VNGVL 127 +NGVL Sbjct: 119 INGVL 123 >UniRef50_D2L8L5 NusB antitermination factor n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L8L5_9DELT Length = 167 Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 55/141 (39%), Positives = 78/141 (55%), Gaps = 8/141 (5%) Query: 2 KP-AARRRARECAVQALYSWQL-SQNDIADVEYQFL-AEQDVKD----VDVLYFRELLAG 54 KP A+RR+AR+ A + LY S D + F DV + + EL+ G Sbjct: 16 KPVASRRKARKQAFECLYGLIFESAADERSLRRVFARCPHDVMEGEDGAGQAFAWELVQG 75 Query: 55 VATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKS 113 V N LD L+ + L + +VE +LR+ALYE+ RSD+P +VA+NEAIELAK Sbjct: 76 VWQNQRELDALIVKFSKNWKLSRIAKVELTILRLALYEILHRSDIPLRVALNEAIELAKR 135 Query: 114 FGAEDSHKFVNGVLDKAAPVI 134 +G E+S F+NG+LD A + Sbjct: 136 YGDENSRNFINGILDAVAKAV 156 >UniRef50_Q1PUX1 Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PUX1_9BACT Length = 422 Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 51/126 (40%), Positives = 71/126 (56%), Gaps = 3/126 (2%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELL-AGVATNTAYLDG 64 R ARE A++ALY L D A+ E Q+ + D+ F LL G ++ +D Sbjct: 4 RTIARELAIKALYQLDL-LGDKAETEIDEFCRQNAEKPDIYKFALLLVTGCRSHVKEIDE 62 Query: 65 LMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 + L + ++K +LR+ +YEL R D+P KV+INEAIELAK FG +DS FV Sbjct: 63 RISLSAENWDLHRMAVIDKNILRLGVYELLYRDDIPPKVSINEAIELAKKFGDKDSGMFV 122 Query: 124 NGVLDK 129 NG+LDK Sbjct: 123 NGILDK 128 >UniRef50_B0TEI6 N utilization substance protein B homolog n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=NUSB_HELMI Length = 206 Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 78/133 (58%), Gaps = 3/133 (2%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQ-DVKDVDVLYFRELLAGVATNTAYLD 63 +RR+ RE A+Q L+ + + + A Q+ +E+ + + + REL+ G N +D Sbjct: 2 SRRQGRETALQTLFMADVGRMEPA-YALQYASEEFGISEAAAAFARELVEGAVANRETID 60 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 G ++ LE + V++ +LR+A++E+ R D+P AINEAIELAK + E+S KF Sbjct: 61 GNIRRLAKEWNLERMPHVDRNLLRVAIFEMLFREDIPLNAAINEAIELAKIYANEESAKF 120 Query: 123 VNGVLDKAAPVIR 135 VNG+L + A +R Sbjct: 121 VNGILGQLARELR 133 >UniRef50_C6BYC6 NusB antitermination factor n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BYC6_DESAD Length = 155 Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 54/145 (37%), Positives = 75/145 (51%), Gaps = 18/145 (12%) Query: 6 RRRARECAVQALYS---------WQLSQ--NDIADVEYQFLAEQDVKDVDVLYFRELLAG 54 RR+ R A Q LY W + N V + E+D+ +L+ RELL G Sbjct: 10 RRKGRVLAFQVLYGLSFVPPHGGWTTERIYNQSPAVIRE--TEEDL----ILFARELLIG 63 Query: 55 VATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKS 113 + LD ++ Y +E + +VE A+LR+A+YEL + D+P KV INE IELAK Sbjct: 64 IWNAQEELDEVIGRYSKHWKIERIAKVELAILRLAVYELVHKPDIPLKVGINEGIELAKK 123 Query: 114 FGAEDSHKFVNGVLDKAAPVIRPNK 138 FG +S F+NG+LD A I K Sbjct: 124 FGDGNSRNFINGILDAVARDIDTGK 148 >UniRef50_A6Q4Q9 N utilization substance protein B homolog n=20 Tax=Epsilonproteobacteria RepID=NUSB_NITSB Length = 139 Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 45/133 (33%), Positives = 75/133 (56%), Gaps = 2/133 (1%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 A R +ARE + LY++ L +I L E+ +++ + L G + +D Sbjct: 2 ATRHQAREAVIGLLYAYDLGNPEIKKFAEDILEEKKIRNKQREFALALFKGTVEHLDTID 61 Query: 64 GLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++K +L S +E +G +E+A+LR+ +YEL +D+ + INEA+ELAK G + S KF Sbjct: 62 EMIKKHLESWDMERVGHIERAILRLGVYELF-YTDLDPAIVINEAVELAKKLGTDQSPKF 120 Query: 123 VNGVLDKAAPVIR 135 +NGVLD A ++ Sbjct: 121 INGVLDAIAKEVK 133 >UniRef50_B1H071 Transcription antitermination factor NusB n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1H071_UNCTG Length = 142 Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 70/127 (55%), Gaps = 1/127 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 RR+AREC++ LY+ I + F + ++ +L GV N LD Sbjct: 2 GTRRKARECSLHMLYAVDNCNVPIESIYNSFAVYFPKGEAYRMFALDLFKGVCDNKEDLD 61 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 L+K +E + V++ ++R+A YE+ +++P +V I+EA+E++K + +DS KF Sbjct: 62 SLIKQCAKNWEIERMAAVDRNIIRLATYEIMATTNIPIRVIIDEAVEISKKYSTKDSSKF 121 Query: 123 VNGVLDK 129 VNG+LDK Sbjct: 122 VNGILDK 128 >UniRef50_A0LI21 N utilization substance protein B homolog n=4 Tax=Deltaproteobacteria RepID=NUSB_SYNFM Length = 151 Score = 78.6 bits (192), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 47/141 (33%), Positives = 79/141 (56%), Gaps = 7/141 (4%) Query: 6 RRRARECAVQALYSWQ---LSQNDIADVEYQFLAEQDVKDVDV---LYFRELLAGVATNT 59 RRR+RE A+Q LY + L + + YQ + + V + E++ GV+ + Sbjct: 4 RRRSREMALQVLYQMEMAVLPPEEALGLYYQLFDDDEKHRVPAEVRPFAEEIVRGVSLHR 63 Query: 60 AYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 A +D ++ L + V++ +LRIA++E+ D+P KV+INEAI+L K+FG+ D Sbjct: 64 ARIDEMITSASEHWRLARMSLVDRNILRIAVFEMLFCFDIPPKVSINEAIDLGKTFGSPD 123 Query: 119 SHKFVNGVLDKAAPVIRPNKK 139 S F+NG+LD P++ N + Sbjct: 124 SGAFINGILDHILPLLEANGR 144 >UniRef50_Q1NRI6 NusB antitermination factor n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NRI6_9DELT Length = 135 Score = 78.6 bits (192), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 48/129 (37%), Positives = 73/129 (56%), Gaps = 1/129 (0%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGV-ATNT 59 M RR+ARE A+QALY ++ D + + Y RELLAG+ A Sbjct: 1 MAVGTRRKARELALQALYQGEMLGVGALDTLPSLCENFEASRRALPYARELLAGIEAHGE 60 Query: 60 AYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 A + + L+ + +++ ++RIA+YE+ R +VP VAI+EA+ELAK +GA+DS Sbjct: 61 AIDAAIDAAAANWRLDRMSYIDRNLMRIAVYEMRWRDEVPAGVAIDEAVELAKRYGADDS 120 Query: 120 HKFVNGVLD 128 F+NG+LD Sbjct: 121 PAFINGILD 129 >UniRef50_A4W3P3 Transcription termination factor n=6 Tax=Streptococcus suis RepID=A4W3P3_STRS2 Length = 140 Score = 78.6 bits (192), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 51/137 (37%), Positives = 78/137 (56%), Gaps = 11/137 (8%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFL--AEQDVKDVDV-LYFRELLAGVAT 57 M R R+CA+QA+ S + Q + ++ +L E++ + V++ L+ L+ GVA Sbjct: 1 MMKNNRHALRKCALQAIVSLEFGQEPVQAAQFSYLYDREEEQEGVEIPLFLLNLVNGVAD 60 Query: 58 NTAYLDGLMKPYLSRL-----LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAK 112 Y D L K SRL L+ L ++K ++R+ L+E+ + P +VA+NEAIELAK Sbjct: 61 ---YRDDLDKELSSRLKAGWTLDRLTLIDKNIMRLGLFEILHFEETPDRVAVNEAIELAK 117 Query: 113 SFGAEDSHKFVNGVLDK 129 F E S KFVNGVL + Sbjct: 118 EFSDESSAKFVNGVLSQ 134 >UniRef50_Q0TPD3 N utilization substance protein B homolog n=10 Tax=Clostridium RepID=NUSB_CLOP1 Length = 135 Score = 77.8 bits (190), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 45/128 (35%), Positives = 71/128 (55%), Gaps = 3/128 (2%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVK--DVDVLYFRELLAGVATNTAYLD 63 R ++RE +Q Y +++ + F+ +D+ D+D+ Y + L G+ N LD Sbjct: 3 RVKSREYLLQLAYQMEITSETALETFNSFMENEDISKDDLDLAYIKSGLLGIEENKEKLD 62 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 L++ L + L + +V ++LRI+ YE+ DVP KV+INEAIEL K + S F Sbjct: 63 SLIESQLVKWKLNRISKVNLSILRISTYEILFAEDVPGKVSINEAIELCKKYSDNKSVSF 122 Query: 123 VNGVLDKA 130 +NGVLDK Sbjct: 123 INGVLDKV 130 >UniRef50_C0R001 Transcription antitermination protein NusB n=1 Tax=Brachyspira hyodysenteriae WA1 RepID=C0R001_BRAHW Length = 181 Score = 77.8 bits (190), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 79/131 (60%), Gaps = 10/131 (7%) Query: 4 AARRRARECAVQALYSWQLSQ-----NDIADVEYQFLAEQDVKDVDVLYFRELLAGVATN 58 ARR+AR AV +LYS++++ N+I +Y +++ + + R L+ G N Sbjct: 47 GARRQARIYAVMSLYSYEINDRKETINEILSFDYDKKIPENIFE----FTRTLVEGTINN 102 Query: 59 TAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 +D L++ Y + ++ + V+K+++R+++Y L D+P V I+EA+E++K F + Sbjct: 103 LERIDNLIEKYSNNWDIKRIQYVDKSIIRMSIYSLIFLKDIPKSVVIDEAVEISKIFSDK 162 Query: 118 DSHKFVNGVLD 128 DS+KFVNG+LD Sbjct: 163 DSYKFVNGILD 173 >UniRef50_Q1MS16 N utilization substance protein B homolog n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=NUSB_LAWIP Length = 161 Score = 77.8 bits (190), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 52/150 (34%), Positives = 78/150 (52%), Gaps = 13/150 (8%) Query: 2 KPAARRRARECAVQALYSWQLSQ-NDIADVEYQFL------AEQDVK-----DVDVLYFR 49 K +RR R A Q LYS +Q N I ++ FL E++ D + + Sbjct: 5 KKHSRRIDRTKAFQVLYSLHFTQINTIETLKEIFLNLPNPLEERNTGIITELDTQISFSW 64 Query: 50 ELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAI 108 +L+ GV N LD ++ + ++ LG++E +LRIA +E+ DVP KV++NEA+ Sbjct: 65 QLVEGVWRNVTRLDKIISQFSQNWRVDRLGKIELTLLRIATFEMYYCPDVPPKVSLNEAL 124 Query: 109 ELAKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 ELA FG E + KF+NG+LD I K Sbjct: 125 ELATCFGDEKARKFINGILDAIIKAIETEK 154 >UniRef50_C8PMR7 Transcription antitermination factor NusB n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PMR7_9SPIO Length = 147 Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 46/128 (35%), Positives = 69/128 (53%), Gaps = 4/128 (3%) Query: 5 ARRRARECAVQALYSW---QLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 RRR R A QALY+W LS +D+ + +++ D D L+ + L G + Sbjct: 4 GRRRGRILAFQALYAWDAGSLSPDDLLPFPWVERTGKELHDEDFLFSQLLFLGAVEHIDE 63 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +DGL+ L L V+KA+LR+ Y L + D ++ INEA+ +A+ +G +DS Sbjct: 64 IDGLIAKNLENWDFNRLKLVDKAILRLGTYSLLFQQDTDPRIVINEAVTIARIYGTDDSF 123 Query: 121 KFVNGVLD 128 KFVN VLD Sbjct: 124 KFVNAVLD 131 >UniRef50_A9ET18 N utilization substance protein B homolog n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=NUSB_SORC5 Length = 140 Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 47/129 (36%), Positives = 72/129 (55%), Gaps = 1/129 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 AR RE A+Q L++ + + V F E Y E++ GVA + A +D Sbjct: 2 GARSTGREAALQMLFAVEAGGSSAPRVVATFWRETPGDPEGRAYADEVVVGVAEDLAAVD 61 Query: 64 -GLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + K + LE + +V++ VLR+ +EL R +VP V ++EA+ELAK +G+E+S F Sbjct: 62 EAIRKASTNWRLERMARVDRNVLRLGAWELMNRPEVPRAVILDEAVELAKRYGSEESGAF 121 Query: 123 VNGVLDKAA 131 VNGVLD+ A Sbjct: 122 VNGVLDRIA 130 >UniRef50_B9L0C6 Transcription antitermination factor NusB n=2 Tax=Thermomicrobia (class) RepID=B9L0C6_THERP Length = 168 Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 45/127 (35%), Positives = 72/127 (56%), Gaps = 1/127 (0%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 RR+AR A+Q LY ++ + + +V + ++ + Y L+ GV + +D + Sbjct: 34 RRQARILALQILYEVDVANHSLEEVLERHRSQASIAQPVRRYAERLVTGVWADRERIDRM 93 Query: 66 MKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + +++L V++ +LRIA+YEL DVP K AINEA+E+AK +G E S +FVN Sbjct: 94 IAEAAPAFPVDQLPPVDRNILRIAIYELLHEPDVPLKAAINEAVEIAKQYGGESSSRFVN 153 Query: 125 GVLDKAA 131 GVL A Sbjct: 154 GVLGTIA 160 >UniRef50_B4D6X5 NusB antitermination factor n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6X5_9BACT Length = 151 Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 48/130 (36%), Positives = 69/130 (53%), Gaps = 6/130 (4%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDV-----LYFRELLAGVATNTA 60 RR RE AVQ LY LS + E ++ V ++ +L GV + Sbjct: 4 RREGREAAVQYLYQIDLSGETPVNAEQFWMLRSGPGKAPVAPKTRIFAEQLALGVRKHLE 63 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +DG +K Y + L+ L V++ +LR+A+YEL DV + INEAIE+AK FG + S Sbjct: 64 EIDGYIKKYTANYELDRLAVVDRNILRVAIYELLHSPDVAPVIIINEAIEVAKKFGTDKS 123 Query: 120 HKFVNGVLDK 129 FVNG+LD+ Sbjct: 124 GGFVNGILDR 133 >UniRef50_A7NB00 Transcription antitermination factor n=19 Tax=Francisella RepID=A7NB00_FRATF Length = 141 Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 50/139 (35%), Positives = 76/139 (54%), Gaps = 3/139 (2%) Query: 1 MKPAARRR--ARECAVQALYSWQLSQNDIADVEYQFLAEQ-DVKDVDVLYFRELLAGVAT 57 MK AR R AR AVQALY +++ N ++++ Q+ A+ D D F L+ V T Sbjct: 1 MKTTARARNNARLYAVQALYQKKIADNTFSELKIQYYADNADRHYTDWDLFYRLIDAVKT 60 Query: 58 NTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 N +D +K S +E + V+ VL++A+ EL + + PY+V I E +E+ S G E Sbjct: 61 NQDTIDKYIKENSSNGVESINYVDYVVLQVAIAELIECLENPYQVIIKEYVEICYSMGTE 120 Query: 118 DSHKFVNGVLDKAAPVIRP 136 + +KF+N VL A IR Sbjct: 121 EGYKFINAVLQNLAKSIRS 139 >UniRef50_B9L730 Transcription antitermination factor NusB n=2 Tax=Nautiliaceae RepID=B9L730_NAUPA Length = 136 Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 77/130 (59%), Gaps = 2/130 (1%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 A ARE +Q LY+ ++ + + + L ++ VK + ++LL GV+ + +D Sbjct: 2 ATITHAREAVIQTLYAQEMGNDQAIEQFDEILKDKKVKGSKAEFAKKLLKGVSEHIDKID 61 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++K +L E L +V+K +LR+ +YE+ +D PY++ I+EA+++AK+F + + F Sbjct: 62 EIIKNHLIDWDFERLDKVDKQILRVGIYEIL-YTDTPYQIVIDEAVKIAKNFSEDKAKSF 120 Query: 123 VNGVLDKAAP 132 +NG+LD+ A Sbjct: 121 INGILDRVAK 130 >UniRef50_C5RKK7 NusB antitermination factor n=1 Tax=Clostridium cellulovorans 743B RepID=C5RKK7_CLOCL Length = 134 Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 74/130 (56%), Gaps = 6/130 (4%) Query: 6 RRRARECAVQALYSWQLSQNDIADV-----EYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 RR+ RE A++ YS + Q D V E + ++D+KDVD + +L+G++ N + Sbjct: 3 RRKTREIAIKLTYSLMIQQIDYKTVIENFKEVEDKEDEDLKDVDFTFVETILSGISENKS 62 Query: 61 YLDGLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 + L+ L L + ++ A+L +A+YE+ D+P V+INEA+E+AK + + + Sbjct: 63 NYEELVSQNLIGWKLNRISKLNLAILLVAIYEIKNIDDIPKAVSINEAVEIAKKYSDDKA 122 Query: 120 HKFVNGVLDK 129 F+N +LDK Sbjct: 123 PNFINSILDK 132 >UniRef50_B8H535 N utilization substance protein B homolog n=4 Tax=Caulobacteraceae RepID=NUSB_CAUCN Length = 149 Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/136 (40%), Positives = 72/136 (52%), Gaps = 10/136 (7%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDV--------DVLYFRELLAGVAT 57 R AR AVQALY ++S + V +F + +DV D +F +L GV T Sbjct: 9 RSVARLAAVQALYQMEVSGAGVDSVIREFGEHRFDRDVEGEQLAAADETFFADLARGVVT 68 Query: 58 NTAYLD-GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG 115 N A +D G++K S LE L +AVLR +EL RSDVP +V INE +E+AKSF Sbjct: 69 NQAKIDQGIVKRLASGWRLERLDATARAVLRAGAFELMYRSDVPTEVVINEYVEIAKSFF 128 Query: 116 AEDSHKFVNGVLDKAA 131 F+NG LD A Sbjct: 129 EGPESGFINGALDAIA 144 >UniRef50_C4L3F7 N utilization substance protein B homolog n=2 Tax=Exiguobacterium RepID=NUSB_EXISA Length = 128 Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 46/123 (37%), Positives = 72/123 (58%), Gaps = 5/123 (4%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R ARE A+Q L+ ++S+ ++ D +F + + D ++ +L+ G + +D L Sbjct: 3 RHEAREKAIQTLFQIEVSKLEV-DEAIEFALDGEESDP---FYEQLVTGTLEHIEDIDAL 58 Query: 66 MKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + L L+ LG VE+ +LR+A +EL +P V INEA+ELAKSFG E++ K VN Sbjct: 59 LVENLKNWRLDRLGNVERTILRMATFELLYVETIPENVTINEAVELAKSFGDEEAGKLVN 118 Query: 125 GVL 127 GVL Sbjct: 119 GVL 121 >UniRef50_D2R650 NusB antitermination factor n=2 Tax=Planctomycetaceae RepID=D2R650_9PLAN Length = 136 Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 51/128 (39%), Positives = 73/128 (57%), Gaps = 3/128 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYF-RELLAGVATNTAYL 62 A R RARE +Q LY L+ + V FL + DV+++ F R+LL GV L Sbjct: 2 ARRSRAREVVLQILYEDDLNPDRSIAVSDVFLRRRLGDDVELVDFARDLLRGVRGRRKEL 61 Query: 63 DGLMKPYLSR-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D L++ L+ + ++ VLR+ YE+ + P +VAINEA+ELAK FGA S + Sbjct: 62 DVLLQQKADHWTLDRMAVTDRNVLRLGAYEILH-TQTPQRVAINEAVELAKRFGARQSPQ 120 Query: 122 FVNGVLDK 129 FVNG+LD+ Sbjct: 121 FVNGILDR 128 >UniRef50_Q04EK8 Transcription termination factor n=2 Tax=Oenococcus oeni RepID=Q04EK8_OENOB Length = 130 Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 45/125 (36%), Positives = 75/125 (60%), Gaps = 5/125 (4%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 +R++ RE + QA+++ +++ + + + L +Q+ D YF EL+ GV L+ Sbjct: 4 SRQQIRELSFQAIFALEINSDQDKALLKKVLFKQNTIDD---YFNELVDGVFAVHKELEE 60 Query: 65 LMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 KPYL + LE + + ++I L+EL+ R D+P KV++++A ELAK+FG E KF Sbjct: 61 KYKPYLKDNWSLERISKTADIAMQIGLFELTSRIDIPKKVSLDQATELAKNFGDESDGKF 120 Query: 123 VNGVL 127 VNGVL Sbjct: 121 VNGVL 125 >UniRef50_Q5WF59 N utilization substance protein B homolog n=2 Tax=Bacillus RepID=NUSB_BACSK Length = 133 Score = 75.9 bits (185), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 47/136 (34%), Positives = 71/136 (52%), Gaps = 8/136 (5%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVD--VLYFRELLAGVATNTAYLD 63 RR AR AVQ LY L D+ E + D + ++ L+ G + +D Sbjct: 3 RRVARLRAVQTLYQLTL-----IDINVDKAIENTLNDEEEPSEFYNTLVHGTLEHQDEID 57 Query: 64 GLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 G + L L+ LG V++A+ R+ L+E+ D+P V +NEAIELAK+FG D+ +F Sbjct: 58 GYLSENLKGYTLDRLGHVDRAIARMGLFEMLYLDDIPVNVTLNEAIELAKAFGGTDAGRF 117 Query: 123 VNGVLDKAAPVIRPNK 138 +NGVL + + NK Sbjct: 118 INGVLSNSYDMAMKNK 133 >UniRef50_D1VSJ6 Transcription antitermination factor NusB n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSJ6_9FIRM Length = 139 Score = 75.9 bits (185), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 73/124 (58%), Gaps = 1/124 (0%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 R+ AR A+Q LYS +L+++ + +F D + + Y +++ + N +D Sbjct: 2 GRKNARVGAMQLLYSMELNKDFSQENIEKFFENYDFSESEQSYINSVISELVNNLDSVDK 61 Query: 65 LMKPYLSR-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 ++ L + L V++ +LR+A++E R D+P +V+INEA+E+AK + +E+S KFV Sbjct: 62 VLSDNLQGWTIPRLATVDREILRVAIFEFLYRKDIPVEVSINEAVEIAKKYSSEESPKFV 121 Query: 124 NGVL 127 NG+L Sbjct: 122 NGIL 125 >UniRef50_B8DJF1 N utilization substance protein B homolog n=2 Tax=Desulfovibrio RepID=NUSB_DESVM Length = 165 Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 40/93 (43%), Positives = 58/93 (62%), Gaps = 1/93 (1%) Query: 47 YFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAIN 105 Y E++ GV A LD + + +E +G+VE +LRIA+YE+ R DVP KVA+N Sbjct: 67 YAWEVIHGVWKTQAELDEAVSGFSQNWRVERMGRVELTLLRIAVYEMLFRDDVPAKVAMN 126 Query: 106 EAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 EAIEL+K FG ++S F+NG+LD A + + Sbjct: 127 EAIELSKQFGDDNSRGFINGILDAVARAVESGR 159 >UniRef50_Q5HW85 N utilization substance protein B homolog n=24 Tax=Epsilonproteobacteria RepID=NUSB_CAMJR Length = 132 Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 46/127 (36%), Positives = 73/127 (57%), Gaps = 5/127 (3%) Query: 4 AARRRARECAVQALYSWQL-SQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 A R + R+ + LY+++L SQN++ E L E+ +++ + L G+ N + Sbjct: 2 ATRHQVRQSVISLLYAFELNSQNNVFVDE--ILDEKKIRNEQKNFTLNLYNGILDNLNNI 59 Query: 63 DGLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D + +L+ + LG VE+A+LR+ YEL +D P + INEAIELAK ++S K Sbjct: 60 DETLNSFLNDNQITALGHVERAILRLGAYEL-LFTDTPSAIVINEAIELAKELANDNSPK 118 Query: 122 FVNGVLD 128 F+NGVLD Sbjct: 119 FINGVLD 125 >UniRef50_B4SCZ7 N utilization substance protein B homolog n=2 Tax=Chlorobium/Pelodictyon group RepID=NUSB_PELPB Length = 171 Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 45/126 (35%), Positives = 74/126 (58%), Gaps = 3/126 (2%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVL-YFRELLAGVATNTAYLDG 64 RR+ RE +QALY+ ++ DI L E+ + D + + +F LL + + +D Sbjct: 5 RRQIREKILQALYTIEIRDTDIDSAAGWLLTEEILADPNAMKFFNMLLKNIKEHMEEIDR 64 Query: 65 -LMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED-SHKF 122 ++K + + + ++K ++R+AL E+ D+P KV+INEAIE+AK F + D S KF Sbjct: 65 YIVKHTFNWDMSRIAIIDKNIIRMALTEILYCEDIPPKVSINEAIEIAKKFNSTDKSSKF 124 Query: 123 VNGVLD 128 VNG+LD Sbjct: 125 VNGILD 130 >UniRef50_Q6MNX9 N utilization substance protein B homolog n=1 Tax=Bdellovibrio bacteriovorus RepID=NUSB_BDEBA Length = 135 Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 46/134 (34%), Positives = 79/134 (58%), Gaps = 9/134 (6%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAE--QDVKDVDVLYFRELL-AGVAT 57 MK ARR+ARE A+Q L+ + + + YQ E + D +V+ + +L+ GV + Sbjct: 1 MKLTARRQARELALQVLFQTEFA----PQISYQTFLEVFEQSLDPEVITYADLIVTGVKS 56 Query: 58 NTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSD-VPYKVAINEAIELAKSFG 115 N +D ++ + +E + +++ +LRIA+YE+ +D + +AINEA+E+AK +G Sbjct: 57 NKEAIDSKIQASSAHWKVERMATIDRNILRIAVYEMRFAADPIKENIAINEAVEIAKKYG 116 Query: 116 AEDSHKFVNGVLDK 129 DS FVNG+LD+ Sbjct: 117 TSDSGSFVNGLLDQ 130 >UniRef50_Q2YYB7 N utilization substance protein B homolog n=59 Tax=Staphylococcus RepID=NUSB_STAAB Length = 129 Score = 75.1 bits (183), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 42/124 (33%), Positives = 69/124 (55%), Gaps = 2/124 (1%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 +R+ +R A Q L+ ++ +D+ E + D+D + L++GV + LD Sbjct: 2 SRKESRVQAFQTLFQLEMKDSDLTINEAISFIKDGNPDLDFEFIHWLVSGVKDHEPVLDE 61 Query: 65 LMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 + PYL + L + ++ +LR+A YE+ SD P KV +NEA+EL K F +D +KF+ Sbjct: 62 TISPYLKDWTIARLLKTDRIILRMATYEIL-HSDTPAKVVMNEAVELTKQFSDDDHYKFI 120 Query: 124 NGVL 127 NGVL Sbjct: 121 NGVL 124 >UniRef50_Q38XV0 N utilization substance protein B homolog n=9 Tax=Lactobacillus RepID=NUSB_LACSS Length = 142 Score = 75.1 bits (183), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 45/133 (33%), Positives = 72/133 (54%), Gaps = 9/133 (6%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVL-------YFRELLAGVATN 58 R + R+ A Q L++ +Q+ + YQ + D D + + Y L++GV N Sbjct: 6 RHQIRQAAFQVLFTLNANQSLELEDAYQAVLTMDQFDAEEVTPVEVPAYLAFLVSGVTEN 65 Query: 59 TAYLDGLMKPYLSR--LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 A LD + PYL + L L + + +LR+ L+E+ ++ P KVA+NEA+ELAK F Sbjct: 66 QAALDAALTPYLKKGWQLSRLAKPDLIILRLGLFEMQNSTEAPAKVALNEALELAKQFTD 125 Query: 117 EDSHKFVNGVLDK 129 + + F+NGVL K Sbjct: 126 DQAKGFINGVLSK 138 >UniRef50_B1N082 Transcription termination factor n=3 Tax=Leuconostoc RepID=B1N082_LEUCK Length = 140 Score = 75.1 bits (183), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 52/135 (38%), Positives = 76/135 (56%), Gaps = 7/135 (5%) Query: 1 MKPAARRRARECAVQALYSWQLS-QNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNT 59 M R +R+ A Q L++ + QN+ D Y + E KD D Y L+ G+ N Sbjct: 1 MANLTRHESRQAAFQILFALEKDPQNNNIDRLYDIVLEG--KDFDD-YLPRLVNGILGNK 57 Query: 60 AYLDGLMKPYLSR--LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 LD + +L+ + + + + +LR+A+YELS++ VPYKVAI+EA+ LAK+F E Sbjct: 58 IDLDAQISEHLAAGWAIARINKADLVILRLAIYELSQQL-VPYKVAIDEALILAKTFADE 116 Query: 118 DSHKFVNGVLDKAAP 132 D KFVNGVL AP Sbjct: 117 DDRKFVNGVLKNFAP 131 >UniRef50_C7LSH4 NusB antitermination factor n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LSH4_DESBD Length = 154 Score = 74.7 bits (182), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 51/140 (36%), Positives = 78/140 (55%), Gaps = 8/140 (5%) Query: 6 RRRARECAVQALYSW----QLSQNDIADVEYQFLAEQ--DVKDVDVLYFRELLAGVATNT 59 RR R A Q +YS ++S++ + F E+ D++ D Y L+ GV N Sbjct: 5 RRHQRRFAFQVIYSLVFGQKMSKDSLIKSFDNFWTEEEFDMERQDS-YAWTLVEGVFDNY 63 Query: 60 AYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 +D ++ + L + +VE +LR++L+E+ D+P KVA+NEAIELAK FG ++ Sbjct: 64 DSIDEIITQHSQHWKLNRIAKVELTILRLSLFEMLFCPDIPIKVAMNEAIELAKDFGDDN 123 Query: 119 SHKFVNGVLDKAAPVIRPNK 138 S FVNGVLD AA + N+ Sbjct: 124 SKTFVNGVLDAAAKGAQRNE 143 >UniRef50_A8MFJ3 N utilization substance protein B homolog n=2 Tax=Alkaliphilus RepID=NUSB_ALKOO Length = 138 Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 43/127 (33%), Positives = 76/127 (59%), Gaps = 3/127 (2%) Query: 5 ARRRARECAVQALYSWQLSQN-DIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +R+ ARE ++ L+ ++ + +I VE+ L E +++ Y ++L N +D Sbjct: 2 SRKLARELTMKVLFEMHINNDFNIQRVEHH-LFEGSIEEQQKEYIHKVLNEAILNLEAID 60 Query: 64 GLMKPY-LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 +++ Y S L + V+ A+LR+A E+ D+PY+V+INEAIELAK +G++++ F Sbjct: 61 SIIEEYSTSWKLNRIANVDLAILRLAFSEIIYMKDIPYRVSINEAIELAKIYGSDETPNF 120 Query: 123 VNGVLDK 129 VNG+L K Sbjct: 121 VNGILGK 127 >UniRef50_A8VXB3 Acetyl-CoA carboxylase, biotin carboxyl carrier protein n=2 Tax=Bacillus RepID=A8VXB3_9BACI Length = 134 Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/134 (38%), Positives = 74/134 (55%), Gaps = 5/134 (3%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 RR AR A+QALY +++ + + L E + D Y L+ V LD Sbjct: 3 RRVARIKAIQALYQVEMTGVNPEEAIKTVLEENESMDP---YLLTLVERVLEEMDELDIK 59 Query: 66 MKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF-GAEDSHKFV 123 ++ + L L +V++A++RIA+YE+ DVP VAINEAI+LA+ F G E+S KFV Sbjct: 60 IQDSMDNWQLSRLARVDRAIMRIAMYEMIHSDDVPVSVAINEAIDLARGFSGDEESGKFV 119 Query: 124 NGVLDKAAPVIRPN 137 NGVL AA + N Sbjct: 120 NGVLSNAAKKLEVN 133 >UniRef50_B3DWQ3 N utilization substance protein B homolog n=1 Tax=Methylacidiphilum infernorum V4 RepID=NUSB_METI4 Length = 143 Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 42/128 (32%), Positives = 75/128 (58%), Gaps = 6/128 (4%) Query: 5 ARRRARECAVQALYSWQLSQN---DIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 +RR+ RE VQ LY W++++ D +++ + D KD + + + L +A + Sbjct: 3 SRRKIRELIVQFLYQWEMNKGVGLDNMLLDFWDFSPLDQKDKEAV--EQWLKEIAEHKEA 60 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 ++ + Y+ L+ L V+K +L + +YE+ R D+P V+INE++E+AK + E+S Sbjct: 61 IEEKINSYVKNWSLDRLAPVDKCILILGIYEILYRKDIPPAVSINESVEIAKKYSTEESG 120 Query: 121 KFVNGVLD 128 KFVNG+LD Sbjct: 121 KFVNGILD 128 >UniRef50_B3QV72 N utilization substance protein B homolog n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=NUSB_CHLT3 Length = 211 Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 43/128 (33%), Positives = 74/128 (57%), Gaps = 6/128 (4%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQ---DVKDVDVLYFRELLAGVATNTAY 61 +RR+ RE A+Q LY++++ + + V + E D+K D ++ +++ V N Sbjct: 4 SRRQIRELAMQVLYAYEVRKEKVDKVAKGIIPEDVVADIKAKDFIF--KIINSVIQNIQD 61 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D + + L + ++K ++RIA+ E+ DVP KV+INEAIE+AK + + S Sbjct: 62 IDTHIAKHADNWELNRMAIIDKNLMRIAIAEMLYLDDVPPKVSINEAIEIAKRYSTDKSS 121 Query: 121 KFVNGVLD 128 KFVNG+LD Sbjct: 122 KFVNGILD 129 >UniRef50_B2S4Q2 N utilization substance protein B homolog n=3 Tax=Treponema RepID=NUSB_TREPS Length = 141 Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 47/135 (34%), Positives = 71/135 (52%), Gaps = 13/135 (9%) Query: 5 ARRRARECAVQALYSWQLSQNDIADV------EYQFLAEQDVKDV-DVLYFRELLAGVAT 57 RRRAR A QAL++W D A + ++ +L D+ + R L G Sbjct: 9 GRRRARILAFQALFAW-----DAAGITPETLTQFTWLRRNPPPSTQDLGFSRLLFLGTLE 63 Query: 58 NTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 + +DG + L L +V+KA+LR++ Y L + D+P V I+EA+ +A+ FG Sbjct: 64 HLREIDGCVSSRLEHWDFVRLNKVDKAILRLSAYSLLFQKDIPPVVVIHEAVSIARDFGT 123 Query: 117 EDSHKFVNGVLDKAA 131 +DS +FVNGVLD A Sbjct: 124 DDSFRFVNGVLDNIA 138 >UniRef50_Q67NA9 N utilization substance protein B homolog n=2 Tax=Clostridiales RepID=NUSB_SYMTH Length = 153 Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/143 (36%), Positives = 76/143 (53%), Gaps = 12/143 (8%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDV--DVL------YFRELLAGVA 56 +RR+ARE A+QAL+ ++ D Q L + D D L + R L+ G Sbjct: 2 SRRKARELALQALFQMDIAGTDPDTAVAQALTRETEPDWAPDRLEEESAEFARRLVRGAW 61 Query: 57 TNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG 115 + D L+ Y +E + V++A+LR+A+YE+ DVP VA+ EA+ELAK+F Sbjct: 62 QHREESDRLIAQYARGWRVERMAAVDRAILRMAVYEIVHSEDVPDSVAVAEAVELAKTFS 121 Query: 116 AEDSHKFVNGVLDKAAPVIRPNK 138 DS +FVNG+L VIR K Sbjct: 122 TADSSRFVNGIL---GSVIRGMK 141 >UniRef50_D2RJI2 NusB antitermination factor n=2 Tax=Acidaminococcus RepID=D2RJI2_ACIFE Length = 139 Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 46/129 (35%), Positives = 75/129 (58%), Gaps = 6/129 (4%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAE----QDVKDVDVLYFRELLAGVATNTA 60 +RR AR A+++L++ + S + + +AE QD + D+ Y +L+ GV N Sbjct: 2 SRRDARTIAMRSLFALEFSPEQSPEETVRTMAEEEDIQDTRKKDLAYALDLVKGVRENQE 61 Query: 61 YLDGLMKPYLSR-LLEELGQVEKAVLRIALYEL-SKRSDVPYKVAINEAIELAKSFGAED 118 LDG + ++ L+ + +++ +LRIA YE+ VP VAINEA+ELAK +G +D Sbjct: 62 ALDGELNGLDAKWTLKRMNGIDRNLLRIAGYEMFCSPEPVPPAVAINEAVELAKVYGGDD 121 Query: 119 SHKFVNGVL 127 S F+NG+L Sbjct: 122 SPAFINGLL 130 >UniRef50_B9E6Q9 N utilization substance protein B homolog n=6 Tax=Staphylococcaceae RepID=NUSB_MACCJ Length = 130 Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 47/126 (37%), Positives = 78/126 (61%), Gaps = 8/126 (6%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVE--YQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 +R +RE A+Q L+ + ++I+ VE +F+ E +DV + EL+ GV + L Sbjct: 2 SRTESREHAIQILFQIENEAHEIS-VEDATRFIVEPPNRDV---FADELVHGVISKQNEL 57 Query: 63 DGLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D + P+L S LE L ++++ +LR++ +EL +D P KV +NEA+ LAK F ++S+K Sbjct: 58 DDKITPHLKSWALERLNKIDRIILRLSAFELL-YTDAPEKVIVNEAVNLAKKFSDDESYK 116 Query: 122 FVNGVL 127 F+NGVL Sbjct: 117 FINGVL 122 >UniRef50_B9E100 N utilization substance protein B homolog n=14 Tax=Clostridium RepID=NUSB_CLOK1 Length = 156 Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 38/90 (42%), Positives = 56/90 (62%), Gaps = 1/90 (1%) Query: 39 DVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSD 97 D+K++D+ Y +L G+ N L+ ++ YL L L +V+ A+L+I YE D Sbjct: 56 DLKNIDIDYVVRVLRGIEKNEDMLNIEIEKYLRNWKLNRLSKVDSAILKICTYEFLHEDD 115 Query: 98 VPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 +P KV+INEAIELAK + +E S F+NGVL Sbjct: 116 IPEKVSINEAIELAKKYSSEKSASFINGVL 145 >UniRef50_D1U9R7 NusB antitermination factor n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U9R7_9DELT Length = 151 Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 48/143 (33%), Positives = 72/143 (50%), Gaps = 7/143 (4%) Query: 2 KPAARRRARECAVQALYSWQLSQ-NDIADVEYQF----LAEQDVKDVDVLYFRELLAGVA 56 +P RR R A Q LY + D+ F + E+ + + R L+ GV Sbjct: 9 RPGIRRVGRTLAFQVLYGTHFDDPKNPVDIGTAFERNPMVEEQESETAREFARALVLGVD 68 Query: 57 TNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG 115 N A +D + + + + +E ++LR++LYE+ +D+P K AINEAIEL+K FG Sbjct: 69 KNLARIDAAIGEHSQHWKFDRIAVIELSILRLSLYEML-FTDIPVKAAINEAIELSKLFG 127 Query: 116 AEDSHKFVNGVLDKAAPVIRPNK 138 E S FVNG+LD A + K Sbjct: 128 DEKSRGFVNGILDGVARTMPSGK 150 >UniRef50_UPI00016C04B6 transcription termination factor n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C04B6 Length = 135 Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 45/136 (33%), Positives = 71/136 (52%), Gaps = 6/136 (4%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQ--DVKDVDVLYFRELLAGVATNTAYL 62 RR+AR C VQ LY+ + A + L E D+K + E G+ N + Sbjct: 2 TRRQARICVVQMLYNLSFHDKEQAQ---EILNENLLDIKGKVKTFISETFEGIVDNMDAI 58 Query: 63 DGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D ++ L L + +V+ +LR+A+YE++ D+P KVAINEA+E+A+ + E S K Sbjct: 59 DTEIEANLVDWNLSRIAKVDLMILRLAVYEINYAKDLPPKVAINEAVEIAQEYSTEKSGK 118 Query: 122 FVNGVLDKAAPVIRPN 137 F+NG+L + N Sbjct: 119 FINGILGNMNKKVSSN 134 >UniRef50_C6JJK8 N utilization substance protein B n=2 Tax=Fusobacterium RepID=C6JJK8_FUSVA Length = 132 Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 79/131 (60%), Gaps = 10/131 (7%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDV--KDVDVLYFRELLAGVATNTAYL 62 +RR ARE + ++ ++ + + D+ +L +++ + ++ + ++ + G+A N Sbjct: 2 SRRLAREELFKLVFEGEIKEENTKDILESYLNREEILQNENEIAFIKKYMNGIAENN--- 58 Query: 63 DGLMKPYLSRL----LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 D ++K ++ E +G VEKA+L+I++YE+ D PY++ INEA+ELAK +G E Sbjct: 59 DKILKVIEEKITGWSFERIGNVEKALLKISVYEIL-CEDTPYEIVINEAVELAKIYGDEK 117 Query: 119 SHKFVNGVLDK 129 + +F+NGVL K Sbjct: 118 TSEFLNGVLAK 128 >UniRef50_Q983A9 N utilization substance protein B homolog n=3 Tax=Alphaproteobacteria RepID=NUSB_RHILO Length = 155 Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 49/150 (32%), Positives = 82/150 (54%), Gaps = 11/150 (7%) Query: 1 MKPAARRRA-RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVD--------VLYFREL 51 M+ A +R A R AVQALY ++ + + ++ ++ A + K+VD +FR + Sbjct: 1 MRHANKRGAARLAAVQALYQMDVAGSGVFEITAEYEAFRLGKEVDGALYREADAQWFRAI 60 Query: 52 LAGVATNTAYLDGLMKPYLSR--LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIE 109 L GV + +D +++ L+ L L +A+LR +YEL KR DVP V ++E ++ Sbjct: 61 LTGVVEDQKTIDPVIRQALTDDWPLSRLDSTLRAILRAGVYELMKREDVPVAVIVSEYVD 120 Query: 110 LAKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 +AK+F ED K VN VLD+ + +R + Sbjct: 121 IAKAFYEEDEPKLVNAVLDRVSRRVRGEGR 150 >UniRef50_C5CI90 NusB antitermination factor n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CI90_KOSOT Length = 148 Score = 72.0 bits (175), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 75/135 (55%), Gaps = 11/135 (8%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQ------FLAEQDVKDVDVLYFRELLAGVAT 57 RR+ RE ++++ + ++ A +EY + +++ K+ Y L G+ Sbjct: 7 GQRRKIREIVFRSIFQYDFHKDFPAAMEYLERETAFYSLDKESKNRAKGY----LMGIIE 62 Query: 58 NTAYLDGLMKPYLSR-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 + +D ++ YL + L ++++VLR+A YEL DVP +V +NEAIE+ K +G+ Sbjct: 63 HLDEIDSIITAYLKNWTFDRLASIDRSVLRLATYELLYVDDVPIEVTLNEAIEITKKYGS 122 Query: 117 EDSHKFVNGVLDKAA 131 ++ KFVNGVLDK A Sbjct: 123 QEEGKFVNGVLDKIA 137 >UniRef50_UPI0001745093 NusB antitermination factor n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001745093 Length = 145 Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 46/136 (33%), Positives = 72/136 (52%), Gaps = 10/136 (7%) Query: 1 MKPAARRRARECAVQALYSW----QLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVA 56 M RR R+ A+Q L++ ++ D A A QD++ + L+ G+ Sbjct: 1 MAIGKRREGRQAAMQFLFAHDVHGKVEDTDRAAFWTLHSATQDIR----AHAESLVTGIK 56 Query: 57 TNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG 115 T+ +D + L E LG V++ +LR+A+YE+ ++VP V INEA+E++K FG Sbjct: 57 THQVQIDDCIAATLENFRFERLGVVDRNILRLAVYEML-HTEVPVPVVINEAVEISKVFG 115 Query: 116 AEDSHKFVNGVLDKAA 131 + FVNGVLDK A Sbjct: 116 DTQTRAFVNGVLDKIA 131 >UniRef50_B0CL95 N utilization substance protein B homolog n=42 Tax=Alphaproteobacteria RepID=NUSB_BRUSI Length = 171 Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 51/140 (36%), Positives = 75/140 (53%), Gaps = 10/140 (7%) Query: 6 RRRARECAVQALYSWQLSQNDIADV--EYQ-FLAEQDVK-----DVDVLYFRELLAGVAT 57 R AR A QALY ++ + +V EY+ F ++V D D +FR ++AGV Sbjct: 20 RGVARLAAAQALYQMDVAGTGVMEVVAEYEAFRLGKEVDGTQYLDADPQWFRAIVAGVVE 79 Query: 58 NTAYLDGLMKPYLSR--LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG 115 + LD ++ L+ L L +A+LR +EL R DVP V ++E +++AK+F Sbjct: 80 DQLKLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELKARKDVPTAVIVSEYVDIAKAFY 139 Query: 116 AEDSHKFVNGVLDKAAPVIR 135 ED K VN VLD+ A VIR Sbjct: 140 TEDEPKLVNAVLDRLALVIR 159 >UniRef50_C7N4M1 Transcription antitermination factor NusB n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N4M1_SLAHD Length = 183 Score = 71.6 bits (174), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 43/127 (33%), Positives = 73/127 (57%), Gaps = 3/127 (2%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD-G 64 R R A+Q LY + + V + + ++ D Y R LL GVA++ +D Sbjct: 7 RTLGRRAALQVLYESDILGTPVDKVVDEGVVPEEAALND--YARRLLLGVASHITDIDRQ 64 Query: 65 LMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + K + ++ + V++A+LRI ++E+ +VP V+INEA+ELAK FG +D+++FVN Sbjct: 65 ISKSSKNWAIDRMPLVDRALLRITVFEMQHVDEVPVAVSINEAVELAKDFGGDDTYRFVN 124 Query: 125 GVLDKAA 131 G+L + A Sbjct: 125 GILGRIA 131 >UniRef50_B1ZVQ6 NusB antitermination factor n=3 Tax=Verrucomicrobia RepID=B1ZVQ6_OPITP Length = 147 Score = 71.2 bits (173), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 74/129 (57%), Gaps = 4/129 (3%) Query: 4 AARRRARECAVQALYSWQLSQ--NDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 A RR R A+Q L++W +++ N D+ F + +D + EL+ GV ++ Sbjct: 7 AQRRDGRVAALQYLFAWSMNRPRNLAEDLRVFFENMEQPRD-HYAFGEELIHGVIEHSDD 65 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D +K + + +++ +LR+A++E+ R D+P V+INEAI+L+K F D+ Sbjct: 66 IDARIKGLAHNWEFDRIAKIDLTILRLAIFEILHRKDIPPVVSINEAIDLSKQFSNADAK 125 Query: 121 KFVNGVLDK 129 +F+NG+LD+ Sbjct: 126 RFINGILDR 134 >UniRef50_C3XHP1 Predicted protein n=1 Tax=Helicobacter bilis ATCC 43879 RepID=C3XHP1_9HELI Length = 368 Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 72/131 (54%), Gaps = 2/131 (1%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 A R++ARE +Q LY+ +L + + FL Q +++ + LL G+ + Sbjct: 2 ATRKQAREAIIQILYAKELGNDKAIEQAEAFLNAQKIRNKQQDFALNLLHGICNEERKIA 61 Query: 64 GLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ +L S L LG +EK ++++ +YEL +++ V INEAIEL KSF +D+ + Sbjct: 62 DIINVFLKSWDLSRLGVIEKNIIKLGVYELL-QTNTQKAVIINEAIELTKSFNVQDAFRL 120 Query: 123 VNGVLDKAAPV 133 VNG+LD A Sbjct: 121 VNGILDSVAKT 131 >UniRef50_Q2LQK4 N utilization substance protein B homolog n=1 Tax=Syntrophus aciditrophicus SB RepID=NUSB_SYNAS Length = 161 Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 43/125 (34%), Positives = 73/125 (58%), Gaps = 3/125 (2%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELL-AGVATNTAYLDG 64 RR ARE A+Q LYS ++ + + + + A + +D F LL G + +D Sbjct: 15 RRIAREIALQVLYSLEVVEMEAGEAIELYWAHYEAP-MDARPFSSLLIEGAWKHRDQIDS 73 Query: 65 LMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 L+ + + + +V+K++LR+A++EL D+P KV +NEAI+L K +G+E+S F+ Sbjct: 74 LIGGCSANWSIARMSKVDKSILRMAVFELCFCEDIPPKVTMNEAIDLGKVYGSENSGSFI 133 Query: 124 NGVLD 128 NG+LD Sbjct: 134 NGILD 138 >UniRef50_A4TBX3 N utilization substance protein B homolog n=18 Tax=Actinomycetales RepID=NUSB_MYCGI Length = 164 Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 48/128 (37%), Positives = 71/128 (55%), Gaps = 5/128 (3%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVE--YQFLAEQDVKDVDVL--YFRELLAGVATNTA 60 R +AR+ AV L+ + A+V LA+ D+ L Y + GV + A Sbjct: 9 GRHQARKRAVDLLFEAEARGITAAEVAEARNALADNGADDIAPLNPYTVTVARGVTDHAA 68 Query: 61 YLDGLMKPYLSR-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 ++D L+ +L L+ L V++AVLR+A++EL DVP VA++EA+ELAK +DS Sbjct: 69 HIDDLISAHLQGWTLDRLPAVDRAVLRVAVWELLHAVDVPEPVAVDEAVELAKQLSTDDS 128 Query: 120 HKFVNGVL 127 FVNGVL Sbjct: 129 PGFVNGVL 136 >UniRef50_Q03RR0 N utilization substance protein B homolog n=23 Tax=Lactobacillus RepID=NUSB_LACBA Length = 142 Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 44/127 (34%), Positives = 69/127 (54%), Gaps = 4/127 (3%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVL--YFRELLAGVATNTAYL 62 R + RE A Q L++ + D YQ + D + + Y L+ GV + + L Sbjct: 4 TRHQIRERAFQMLFALNANPEADHDALYQRVLTDDPNQLVPVPDYLATLVNGVLAHQSEL 63 Query: 63 DGLMKPYLSR--LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 D + YLS L+ + + + +LR+A YE+ DVP +VA+NEA+ELAK+F + S Sbjct: 64 DAQIDQYLSTGWQLKRIAKTDLVILRMAFYEIEHVDDVPNRVAVNEALELAKNFSDDRSR 123 Query: 121 KFVNGVL 127 +F+NGVL Sbjct: 124 RFINGVL 130 >UniRef50_Q836W8 N utilization substance protein B homolog n=39 Tax=Lactobacillales RepID=NUSB_ENTFA Length = 154 Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 45/133 (33%), Positives = 75/133 (56%), Gaps = 10/133 (7%) Query: 5 ARRRARECAVQALY----SWQLSQNDIADVEYQF----LAEQDVKDVDVLYFRELLAGVA 56 R RE A+QAL+ + L++ D D + + +D +D+ Y L+ GV Sbjct: 11 TRHEIREKALQALFPLDFNADLTKQDAIDYALAYDNREIVSEDGEDLVPTYLDLLVGGVC 70 Query: 57 TNTAYLDGLMKPYLSR--LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 + A LD ++ +L ++ L +++ +LR+A++E+ SDVP VA+NEA+EL+K + Sbjct: 71 SRKAELDEVITNHLGNNWSMQRLAKIDIVILRLAIFEMLYVSDVPNIVALNEAVELSKKY 130 Query: 115 GAEDSHKFVNGVL 127 + S KFVNGVL Sbjct: 131 SDDRSRKFVNGVL 143 >UniRef50_A5D319 N utilization substance protein B homolog n=3 Tax=Peptococcaceae RepID=NUSB_PELTS Length = 144 Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 77/131 (58%), Gaps = 11/131 (8%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQ--DVKDVDVLYFRELLAGVATNTAYL 62 +RR+ARE A+Q L+ + D + ++ + E ++K + R L+ G N A + Sbjct: 2 SRRQARERALQILFQVDVGGADPGEA-FRLMDEGFGELKKYQE-FARLLVGGTLENLAAI 59 Query: 63 D----GLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 D G+ K + + + V++ ++R+ALYE+ D+PY V++NEA+EL K++G E+ Sbjct: 60 DRVIAGVSKDWN---INRMANVDRNIIRMALYEIFFCEDIPYSVSVNEAVELGKTYGGEE 116 Query: 119 SHKFVNGVLDK 129 S +F+NG+L + Sbjct: 117 SGRFINGILGR 127 >UniRef50_Q3ATI5 N utilization substance protein B homolog n=9 Tax=Chlorobiaceae RepID=NUSB_CHLCH Length = 169 Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 43/126 (34%), Positives = 74/126 (58%), Gaps = 3/126 (2%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVL-YFRELLAGVATNTAYLDG 64 RR+ RE +QALY+ +L + + L E+ + D + + +F LL+ + + +D Sbjct: 5 RRQIREKILQALYTVELRGITLDEAAGWLLTEEILADPNAMKFFNLLLSSIKAHREEIDN 64 Query: 65 -LMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED-SHKF 122 + + + + + ++K ++R+AL E+ D+P KV+INEAIE+AK F + D S KF Sbjct: 65 YIAQQTFNWDMSRIAIIDKNIIRMALTEILYCEDIPPKVSINEAIEIAKKFNSTDKSSKF 124 Query: 123 VNGVLD 128 VNG+LD Sbjct: 125 VNGILD 130 >UniRef50_C1A8F7 Antitermination protein NusB n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A8F7_GEMAT Length = 157 Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 50/126 (39%), Positives = 71/126 (56%), Gaps = 9/126 (7%) Query: 8 RARECAVQALYSWQLSQ----NDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 R R A+QALY+ L IA + LA + + L+ L+A VA A LD Sbjct: 27 RGRARALQALYAADLRDLTQVKRIATTVFDDLA---IDPAERLFASRLIATVADRGAVLD 83 Query: 64 G-LMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 L++ + LE LG +E++VLR+A EL+ R + P KV + EA+ LA+ +G E S +F Sbjct: 84 AALVEVTANWRLERLGAIERSVLRLAAAELA-REETPVKVVLQEAVHLAERYGTERSARF 142 Query: 123 VNGVLD 128 VNGVLD Sbjct: 143 VNGVLD 148 >UniRef50_C8W0Z5 NusB antitermination factor n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W0Z5_DESAS Length = 156 Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 70/126 (55%), Gaps = 1/126 (0%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 +RR R+ A+Q L+ ++ D + +A+ + + R+L+ G + +D Sbjct: 2 SRREGRQIAMQILFQIEVGGIDPEEAFKNTVADSTCPVPIMEFARQLVFGTLGHLKEIDR 61 Query: 65 LMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 ++ L+ + V+K ++R+ALYE+ ++P V+ NEAIELAK FG E+S KFV Sbjct: 62 VISEISKGWRLDRIANVDKTLIRMALYEIFYEDNIPLNVSANEAIELAKIFGGEESGKFV 121 Query: 124 NGVLDK 129 NG++ K Sbjct: 122 NGIIGK 127 >UniRef50_B9LDT2 N utilization substance protein B homolog n=6 Tax=Chloroflexi (class) RepID=NUSB_CHLSY Length = 151 Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 45/125 (36%), Positives = 70/125 (56%), Gaps = 3/125 (2%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R R R A+Q L+ + + I V + L ++ + + R L+ G + +YLD + Sbjct: 10 RHRVRIAALQILFEVDETDHAIDQVLERRLTDEPMSQESAEFLRRLVFGAWEHRSYLDRI 69 Query: 66 MKPYLSRL-LEELGQVEKAVLRIALYEL--SKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ + ++ V+KAVLRIAL+EL P K INEA+ELAK FG+++S +F Sbjct: 70 IEEAAPNWPVAQMPGVDKAVLRIALFELLIDDVERTPIKAVINEAVELAKQFGSDNSSRF 129 Query: 123 VNGVL 127 VNGVL Sbjct: 130 VNGVL 134 >UniRef50_Q3AAM1 N utilization substance protein B homolog n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=NUSB_CARHZ Length = 144 Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 49/137 (35%), Positives = 73/137 (53%), Gaps = 10/137 (7%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDV-------KDVDVLYFRELLAGVATN 58 R ARE A +AL+ + D AE+ K VD + REL+ GV Sbjct: 3 RHTARELAFKALFGLDFAPEKTLDTLESLWAEKIAEGKIPPEKLVD--FSRELVRGVIEK 60 Query: 59 TAYLDGLMKPY-LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 LD +++ + + L +V+K +LR+ALYE+ R D+ V+I+EA+ELAK +G E Sbjct: 61 KERLDEIIRRRAIGWDFKRLAKVDKTLLRLALYEMLYRPDIDIPVSIDEAVELAKVYGEE 120 Query: 118 DSHKFVNGVLDKAAPVI 134 +S KF+NG+L A I Sbjct: 121 ESPKFINGILGYVAEHI 137 >UniRef50_C3XMJ2 Transcription termination protein n=1 Tax=Helicobacter winghamensis ATCC BAA-430 RepID=C3XMJ2_9HELI Length = 199 Score = 68.6 bits (166), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 68/129 (52%), Gaps = 2/129 (1%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 A R AR Q LY++ + I+ + L+E +K+ + + L GV + +D Sbjct: 2 ATRTHARVAVAQLLYAYGSGNDGISKFVEEILSEHKIKNAQNEFAKTLFNGVLEHLEEVD 61 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 +K + E +G +E+A+LR+ YE+ S + + INEA+E+ K+F E S KF Sbjct: 62 LRIKHQIKNWDFERIGDMERAILRLGAYEII-FSGMDKAIVINEALEITKNFSNETSTKF 120 Query: 123 VNGVLDKAA 131 +NG+LD A Sbjct: 121 INGILDGIA 129 >UniRef50_C5R7W5 Transcription antitermination protein NusB n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5R7W5_WEIPA Length = 139 Score = 68.6 bits (166), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 47/139 (33%), Positives = 78/139 (56%), Gaps = 13/139 (9%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLA------- 53 M R + R+ A Q+L+ L+ N ADV+ + + V D ++ + E+ A Sbjct: 1 MTELNRHQIRQAAFQSLFG--LALNPTADVDTT-ITQVLVGDPEIAWEDEIPADLTSVVL 57 Query: 54 GVATNTAYLDGLMKPYLSR--LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELA 111 GV LD ++ +LS L+ L + ++R+ALYE +K +DVP K+A+NEA++LA Sbjct: 58 GVVAKQDELDLMITDHLSSDWTLDRLNTTDLVLMRLALYE-AKFTDVPAKIAVNEALQLA 116 Query: 112 KSFGAEDSHKFVNGVLDKA 130 F + S KF+NG+L+K+ Sbjct: 117 HDFTDDKSRKFINGILNKS 135 >UniRef50_B8D2G0 N utilization substance protein B homolog n=1 Tax=Halothermothrix orenii H 168 RepID=NUSB_HALOH Length = 134 Score = 68.6 bits (166), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 46/133 (34%), Positives = 76/133 (57%), Gaps = 12/133 (9%) Query: 5 ARRRARECAVQALYSWQLSQN-DIADV-----EYQFLAEQDVKDVDVLYFRELLAGVATN 58 R + R A+Q LYS +S +I E+++ + V D YF +++ GV + Sbjct: 4 TRHQERVWALQILYSLDISSELNIQKARKTCREFKY---KKVLDKKRYYFEDIVEGVINS 60 Query: 59 TAYLDGLMKPY-LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 LD ++ Y + +E + +++ +LRIALYE+ S +P VAI+EA+E+AK FG Sbjct: 61 RQDLDSIINKYAIDWDVERMACIDRNILRIALYEIE--SGLPVGVAIDEAVEIAKDFGDS 118 Query: 118 DSHKFVNGVLDKA 130 +S KF+NG+L K+ Sbjct: 119 NSPKFINGILAKS 131 >UniRef50_A8SLT0 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SLT0_9FIRM Length = 134 Score = 68.2 bits (165), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 69/136 (50%), Gaps = 5/136 (3%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 R ARE ++ +Y + N D F+ D+ +V Y R+ + N +D Sbjct: 2 TRSEAREWCMKLIYQLSIHNNFKCDEIESFIEYFDLPSSEVKYIRKNCKSIIDNLDNIDN 61 Query: 65 LMKPYLSRLLE--ELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++K L + +++ A+LR+A+ E+ D+P VAINEAIE+A + + S+KF Sbjct: 62 IIKENLEGCWNYNRIAKIDLAILRVAVNEIYYLDDIPESVAINEAIEIANKYSTDASYKF 121 Query: 123 VNGVLDKAAPVIRPNK 138 +NG+L ++R K Sbjct: 122 INGIL---GTIVRAKK 134 >UniRef50_Q1JF82 N utilization substance protein B homolog n=57 Tax=Streptococcus RepID=NUSB_STRPD Length = 150 Score = 68.2 bits (165), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 76/132 (57%), Gaps = 7/132 (5%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQF----LAEQDVKDVDV-LYFRELLAGVATNT 59 +RR RE A QAL++ ++ +A ++ + + +D + +++ ++ L+ GV + Sbjct: 8 SRRDLRERAFQALFNIEMGAELLAASQFAYGYDKVTREDAQVLELPIFLLSLVTGVNNHK 67 Query: 60 AYLDGLMKPYLSR--LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 LD L+ +L + LE L +K +LR+ L+E+ + P +VA+NE IE+AK + E Sbjct: 68 EELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEVAKKYSDE 127 Query: 118 DSHKFVNGVLDK 129 S KF+NG+L + Sbjct: 128 TSAKFINGLLSQ 139 >UniRef50_C4XHY8 N utilization substance protein B homolog n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XHY8_DESMR Length = 159 Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 50/144 (34%), Positives = 77/144 (53%), Gaps = 14/144 (9%) Query: 2 KP-AARRRARECAVQALYSWQLSQNDIADVEYQFL-----AEQDV----KDVDVLYFREL 51 KP +RR+AR+ A + LY LS AD E L DV D + EL Sbjct: 8 KPIVSRRKARKQAFEFLYG--LSFEPAAD-ERSLLRLFKRCPHDVAEGEDDAGHEFAWEL 64 Query: 52 LAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIEL 110 + GV N +D + + + + +VE +LR+A++E+ R D+P +V++NEAIEL Sbjct: 65 VLGVWRNQRDIDATIVRFSKNWKISRIAKVELTILRLAVHEILSRPDIPLRVSLNEAIEL 124 Query: 111 AKSFGAEDSHKFVNGVLDKAAPVI 134 +K +G E+S F+NG+LD A + Sbjct: 125 SKRYGDENSRNFINGILDALAKAV 148 >UniRef50_B8FJ78 N utilization substance protein B homolog n=2 Tax=Desulfobacteraceae RepID=NUSB_DESAA Length = 143 Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 47/128 (36%), Positives = 71/128 (55%), Gaps = 9/128 (7%) Query: 6 RRRARECAVQALY---SWQLSQNDIADVEYQ-FLAEQDVKDVDVLYFRELLAGVATNTAY 61 RRRARE A+Q+L+ S + D+ Q F +D+ +F EL GV N Sbjct: 4 RRRARELALQSLFYVDSTSAPPLEALDLFCQNFPPPKDLAQ----FFYELAKGVINNQDE 59 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D L++ + + L + V+ ++RIA YE DVP +V+INEAI++ K FG +S Sbjct: 60 IDRLIEQHSNNWKLYRMSAVDLNLMRIAAYEFLFCPDVPRRVSINEAIDIGKRFGTAESG 119 Query: 121 KFVNGVLD 128 F+NG+LD Sbjct: 120 AFINGILD 127 >UniRef50_D0LW51 NusB antitermination factor n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LW51_HALO1 Length = 150 Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 49/134 (36%), Positives = 76/134 (56%), Gaps = 6/134 (4%) Query: 1 MKPAARRRARECAVQALYSWQLS---QNDIADVEYQFLAEQDVKDVDVLYFRELLAGVAT 57 MK ARRRAR A+Q LY+ L+ + A +EY + + + + R L+ V Sbjct: 1 MKVGARRRARSYALQVLYALDLNPLEEPTRALLEYAGRFDLRIDEEAGDFARSLIEQVYP 60 Query: 58 NTAYLDGLMKPYLSR--LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG 115 + +D ++ SR +E + +V++ VLR+A+ ELS+ +V INEA+ELAK FG Sbjct: 61 HLERIDERIQ-TASRNWRIERMSRVDRNVLRLAVGELSQPDGAAARVVINEAVELAKRFG 119 Query: 116 AEDSHKFVNGVLDK 129 +S FVNG+LD+ Sbjct: 120 TTESPAFVNGILDR 133 >UniRef50_C8WLN1 NusB antitermination factor n=2 Tax=Coriobacteriaceae RepID=C8WLN1_EGGLE Length = 195 Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 49/135 (36%), Positives = 76/135 (56%), Gaps = 11/135 (8%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVK-DVDVL---YFRELLAGVATNTAY 61 R AR A+Q LY+ ++I D +AE + + D D Y +L+ GV ++ Sbjct: 8 RTSARRAALQVLYT-----SEITDESPAAIAEGNSRLDEDGPLPEYALKLVLGVESHRCA 62 Query: 62 LDG-LMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED-S 119 +D L + L + V++++LR+A +E+ DVP V INEA+ELAK FG ED S Sbjct: 63 IDNHLAATSENWSLARMPIVDRSILRLATFEMMYIDDVPTSVTINEAVELAKDFGGEDES 122 Query: 120 HKFVNGVLDKAAPVI 134 H+FVNG+L + A ++ Sbjct: 123 HRFVNGILGRIAKML 137 >UniRef50_A9BJY1 NusB antitermination factor n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BJY1_PETMO Length = 151 Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 71/130 (54%), Gaps = 4/130 (3%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQF--LAEQ-DVKDVDVLYFRELLAGVATNTAYL 62 +R R+ ++L+ + + ++ + F L EQ +++ L ++ + + N Sbjct: 15 KRMMRKLIFESLFQLSIKDVKLDNILFTFEKLNEQAHLEESYYLEAKQYIEDIYKNKNEY 74 Query: 63 DGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D L+ Y +E +G +EK V+RI +YEL + D+P KV +NE+ EL K++ + + Sbjct: 75 DALINKYSEGWRVERIGNIEKTVMRIFIYELINKKDIPVKVILNESTELTKTYATQKAAA 134 Query: 122 FVNGVLDKAA 131 FVNG++DK A Sbjct: 135 FVNGIMDKIA 144 >UniRef50_Q6AP93 N utilization substance protein B homolog n=1 Tax=Desulfotalea psychrophila RepID=NUSB_DESPS Length = 141 Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/130 (34%), Positives = 71/130 (54%), Gaps = 7/130 (5%) Query: 6 RRRARECAVQALYSWQL------SQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNT 59 RR ARE A+Q LY + ++ + QF V Y L+AGV + Sbjct: 4 RRFAREAALQFLYQDDFIPESADTPGELKERFEQFCEIYQVNKKGRTYALNLIAGVLADQ 63 Query: 60 AYLDGLMK-PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 +D L++ ++ + + ++ +LR+A +E++ DVP +VAINEA+E+AK F ++ Sbjct: 64 EAIDRLIEEAAVNWRMSRISATDRNLLRVATFEINFCDDVPAEVAINEAVEIAKRFCGDE 123 Query: 119 SHKFVNGVLD 128 S KFVNGVLD Sbjct: 124 SPKFVNGVLD 133 >UniRef50_D1B5H9 NusB antitermination factor n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B5H9_THEAS Length = 148 Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/133 (38%), Positives = 74/133 (55%), Gaps = 11/133 (8%) Query: 3 PAARRRARECAVQALYSWQLSQN-DIADVEYQF-LAEQDVKDVDVLYFRELLAGVATNTA 60 P RRRARE A+Q Y + Q I +V L E+D + D Y L +G+ Sbjct: 6 PKKRRRARELALQLGYLMDMRQELGINEVLGSLPLDEEDPEVRD--YAVALTSGLYRERQ 63 Query: 61 YLDGLMKPYLSRLL----EELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 L+G+++ RL+ E + V++ +R+A+ E VP+ VAI+EA+ELAK FG Sbjct: 64 RLEGILR---ERLVGWRPERMVAVDRVAIRLAILEGYLERLVPFPVAISEAVELAKLFGT 120 Query: 117 EDSHKFVNGVLDK 129 EDS +FVNGVL + Sbjct: 121 EDSGRFVNGVLGR 133 >UniRef50_Q8DSE9 N utilization substance protein B homolog n=5 Tax=Streptococcus RepID=NUSB_STRMU Length = 142 Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 72/129 (55%), Gaps = 4/129 (3%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVL--YFRELLAGVATNTAYL 62 +RR RE A QAL+S + +++ + + +++ ++ L + L+ GV+ + Sbjct: 8 SRRDLRERAFQALFSLEFGGDNLTAARFAYTYDKNEEEEAELPLFLLTLIQGVSDCRREI 67 Query: 63 DGLMKPYLSR--LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 D + +L L L ++K++LR+ LYE+ + P +VA+NE IE+AK + E S Sbjct: 68 DKNISIHLKSGWTLSRLTLIDKSLLRLGLYEIKYHKETPERVALNEIIEIAKKYSDEKSS 127 Query: 121 KFVNGVLDK 129 KF+NGVL + Sbjct: 128 KFINGVLSQ 136 >UniRef50_B0VJ63 N utilization substance protein B n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VJ63_9BACT Length = 153 Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 50/141 (35%), Positives = 74/141 (52%), Gaps = 23/141 (16%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNT---AYL 62 RR+ARE AVQ LYS + S+ + EY L E D+L + N+ A+ Sbjct: 4 RRKAREMAVQCLYSLEFSEVEKDYREYGLLNEYP----DILLSLAEAEHIQPNSPVYAFA 59 Query: 63 DGLMKPYLSRL---------------LEELGQVEKAVLRIALYELSKRSDVPYKVAINEA 107 D L+K + + LE++ +++++L +A YEL +D P V INEA Sbjct: 60 DELVKNTIINIEQVESEIDKLSDNWELEDIALLDRSILCLAAYEL-LFTDTPAPVVINEA 118 Query: 108 IELAKSFGAEDSHKFVNGVLD 128 IE+AK F +E S KF+NG+LD Sbjct: 119 IEIAKKFSSEASGKFINGILD 139 >UniRef50_B0MQ18 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MQ18_9FIRM Length = 143 Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 11/129 (8%) Query: 5 ARRRARECAVQALYSWQLSQNDI----ADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 R RE A+ L+ +L+ + D + F E + + V +L GVA + Sbjct: 7 TRHEMREAALLILFQMKLNPETLDEILEDCKESFEMEYNSQSV------KLAKGVAEHED 60 Query: 61 YLDGLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 L+G+++ Y SR L+ + + A+++IALYE+ VP KVAINEAIE AK + + Sbjct: 61 ELNGIIESYSPSRKLDRISYINLAIMKIALYEMKYCPSVPDKVAINEAIEFAKEYADKTD 120 Query: 120 HKFVNGVLD 128 +F+NGVL+ Sbjct: 121 VRFINGVLN 129 >UniRef50_C4ZCZ0 N utilization substance protein B homolog n=5 Tax=Clostridiales RepID=NUSB_EUBR3 Length = 131 Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 1/86 (1%) Query: 47 YFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAIN 105 Y E + + + A LD L+ + + +V+ A++R+A+YE+ D+P KV+IN Sbjct: 46 YIDEKCSAIIEHMAELDALIDEKSTGWKTNRMAKVDLAIIRLAVYEIKFEDDIPTKVSIN 105 Query: 106 EAIELAKSFGAEDSHKFVNGVLDKAA 131 EA+ELAK +GA++S FVNGVL K A Sbjct: 106 EAVELAKKYGADESGAFVNGVLAKFA 131 >UniRef50_C5C681 N utilization substance protein B homolog n=14 Tax=Actinomycetales RepID=NUSB_BEUC1 Length = 153 Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 38/93 (40%), Positives = 57/93 (61%), Gaps = 4/93 (4%) Query: 47 YFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAIN 105 Y E++ GVA + A +D L++ Y LE + V++A+LRI ++EL DVP VA++ Sbjct: 53 YTVEIVEGVAAHQARIDELLETYAQGWSLERMPAVDRAILRIGVWELLFNDDVPDAVAVD 112 Query: 106 EAIELAKSFGAEDSHKFVNGVLD---KAAPVIR 135 EA+ LA +DS FVNG+L + APV+R Sbjct: 113 EAVALAAELSTDDSPTFVNGLLGQLLRLAPVLR 145 >UniRef50_C4FTS3 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FTS3_9FIRM Length = 154 Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 36/85 (42%), Positives = 52/85 (61%), Gaps = 4/85 (4%) Query: 47 YFRELLAGVATNTAYLDGLMKPYLSR--LLEELGQVEKAVLRIALYEL--SKRSDVPYKV 102 Y L+ GV LD + YL+ L+ L +++ A+LR+A YEL +VP KV Sbjct: 61 YLDRLVQGVNQTAEELDQRISHYLAEDWTLDRLARIDLAILRVAFYELLYVSEDEVPSKV 120 Query: 103 AINEAIELAKSFGAEDSHKFVNGVL 127 A+NEA+ELAK+F + S +F+NGVL Sbjct: 121 AVNEAVELAKTFSDDKSKQFINGVL 145 >UniRef50_B8ZUK7 N utilization substance protein B homolog n=16 Tax=Actinomycetales RepID=NUSB_MYCLB Length = 190 Score = 65.1 bits (157), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 37/86 (43%), Positives = 55/86 (63%), Gaps = 4/86 (4%) Query: 54 GVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAK 112 GV+ +TA +D L+ +L L+ L V++A+LR++++EL DVP VA++EA+ELAK Sbjct: 59 GVSEHTARIDELIISHLQGWKLDRLPAVDRAILRVSIWELLYADDVPEPVAVDEAVELAK 118 Query: 113 SFGAEDSHKFVNGVLDK---AAPVIR 135 +DS FVNG+L K P IR Sbjct: 119 ELSTDDSPGFVNGLLGKVMLVTPQIR 144 >UniRef50_D1B3U2 Transcription antitermination factor NusB n=3 Tax=Campylobacterales RepID=D1B3U2_SULD5 Length = 136 Score = 65.1 bits (157), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 43/126 (34%), Positives = 67/126 (53%), Gaps = 2/126 (1%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 A R +ARE + LY+ + I + E+ +++ + L GV + + +D Sbjct: 2 ATRHQARESIITLLYAEDIGNAGIDKFIDELFEEKKIRNQQKEFALGLYQGVKAHLSVID 61 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + +L L E+G +E+A+LR+ YE+ S++ V INEAIELAK E S KF Sbjct: 62 EAINRHLKEWNLSEIGMLERAILRLGGYEIL-YSELDNAVVINEAIELAKKLCNETSPKF 120 Query: 123 VNGVLD 128 +NGVLD Sbjct: 121 INGVLD 126 >UniRef50_Q1ISD3 N utilization substance protein B homolog n=2 Tax=Acidobacteria RepID=NUSB_ACIBL Length = 146 Score = 64.7 bits (156), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 70/133 (52%), Gaps = 2/133 (1%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVA-TNT 59 +K RR++RE A+Q L+ + + VE F AE+ + +V F L VA + Sbjct: 3 IKTGTRRKSRELALQMLFQMDMGKQSADHVEKTFWAERKDLEEEVRSFAIDLFHVAEKRS 62 Query: 60 AYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 +D L++ + +E + V++ +LR A E P V INE++E+A+ F + + Sbjct: 63 EEIDKLIEKHAEHWRMERMAAVDRNILRGACAEFMGFPKTPKPVVINESLEIARRFSSPE 122 Query: 119 SHKFVNGVLDKAA 131 S +F+NGVLD A Sbjct: 123 SVQFINGVLDSVA 135 >UniRef50_D0MK26 NusB antitermination factor n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MK26_RHOM4 Length = 165 Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 44/126 (34%), Positives = 68/126 (53%), Gaps = 2/126 (1%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYF-RELLAGVATNTAYLD 63 +RR RE +QALY++++ + V L D + L F +L + D Sbjct: 3 SRREVRERVLQALYAYEVGHDTAEHVIDTVLRPALKDDREALRFATQLFLRTINYSEEAD 62 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 L+ ++ L + +++ +LR+A+ EL D+P KV+INEAIELAK + E S +F Sbjct: 63 RLIADHVKNWDLTRIALIDRLLLRMAICELLAFEDIPPKVSINEAIELAKKYSTEKSGQF 122 Query: 123 VNGVLD 128 VNGVLD Sbjct: 123 VNGVLD 128 >UniRef50_D2EIA0 Transcription antitermination factor NusB n=1 Tax=Pediococcus acidilactici 7_4 RepID=D2EIA0_PEDAC Length = 134 Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 70/129 (54%), Gaps = 4/129 (3%) Query: 6 RRRARECAVQALYSWQLSQN-DIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 R + RE A + +++ ++ + D +++ Q L E DV + L+ GV N + ++ Sbjct: 5 RHQMRESAFKMIFAQSVNPDADPEELKKQVLEEFHETDVADPFLDNLVTGVQENVSSINE 64 Query: 65 LMKPYLSR--LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + L + L ++ +L+I YE+ K ++VP VAINEA+ELAK + E + KF Sbjct: 65 TIGKELKAGWTVNRLANPDRVILQIGTYEI-KHTEVPNNVAINEALELAKKYTDEKARKF 123 Query: 123 VNGVLDKAA 131 +NGVL A Sbjct: 124 INGVLSNVA 132 >UniRef50_C7NCF2 NusB antitermination factor n=4 Tax=Fusobacteriaceae RepID=C7NCF2_LEPBD Length = 138 Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 72/134 (53%), Gaps = 3/134 (2%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVL-YFRELLAGVATNTAYLD 63 RR RE + L+ +L N+I + E+++K D + + R + + N L Sbjct: 2 TRREIREEIFKLLFEHELIDNNIEKRINDVINEENLKKNDEIDFLRSYVTEIIENENILI 61 Query: 64 GLMKPYLSR-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 +K L E LG +EK +L+I+ YE++ ++ + Y++AINE +E+AK + D+ +F Sbjct: 62 EKIKNILDGWTYERLGTIEKVLLKISFYEITIKN-IGYEIAINEVLEIAKKYSYNDTKEF 120 Query: 123 VNGVLDKAAPVIRP 136 +NG+L K I+ Sbjct: 121 LNGILAKLVKDIKE 134 >UniRef50_C1TMF2 Transcription antitermination factor NusB n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TMF2_9BACT Length = 143 Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/123 (34%), Positives = 69/123 (56%), Gaps = 2/123 (1%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 + RARE A+Q LYS +++ A+ + +D DV+ R L+ GV + +D L Sbjct: 10 KHRAREVALQLLYSMDVTKKHDAEKALNDFSFEDEIDVET-GVRALVLGVMDHLGEIDNL 68 Query: 66 MK-PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + + + + V++A +R+A+YE VP VAI+EA+EL K FG ++S +FVN Sbjct: 69 INVNVVGWRGDRMVAVDRAAIRLAVYEGLIARVVPVPVAISEAVELVKVFGTDESGRFVN 128 Query: 125 GVL 127 G L Sbjct: 129 GAL 131 >UniRef50_Q136T4 N utilization substance protein B homolog n=36 Tax=Alphaproteobacteria RepID=NUSB_RHOPS Length = 174 Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 70/136 (51%), Gaps = 10/136 (7%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVD--------VLYFRELLAGVAT 57 R AR AVQALY + I D +F + +V+ +FR++++GV Sbjct: 29 RGAARLAAVQALYQMDIGGAGIDDTFAEFESHWIGNEVEGDQYLPAEAAFFRDIVSGVVR 88 Query: 58 NTAYLDGLMKPYLSR--LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG 115 + LD L+ L++ L + + +AV+R YEL R D+P +V ++E +++A +F Sbjct: 89 DQTKLDPLIDEALAKGWPLARIDAIIRAVMRAGAYELEHRKDIPARVVVSEYVDVAHAFV 148 Query: 116 AEDSHKFVNGVLDKAA 131 +D VN VLD+ A Sbjct: 149 EKDETGMVNAVLDQIA 164 >UniRef50_B2KE32 N utilization substance protein B homolog n=1 Tax=Elusimicrobium minutum Pei191 RepID=NUSB_ELUMP Length = 140 Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/131 (35%), Positives = 71/131 (54%), Gaps = 11/131 (8%) Query: 6 RRRARECAVQALYSWQLSQNDIADV-EYQFLAEQDVKD-VDVLYFR---ELLAGVATNTA 60 RR ARE A+Q LY + D+ EY+ +D KD +D F ++ G + A Sbjct: 4 RRLAREHALQTLYYADTGKTQGKDINEYK----EDFKDSLDAAGFEFCSGIIDGALEHQA 59 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYE-LSKRSDVPYKVAINEAIELAKSFGAED 118 LD ++ Y L + V++++LR+A YE L + P I+EAIELAK F E+ Sbjct: 60 ELDKIISAYAKNWSLNRMSVVDRSILRMAAYEMLFSPENTPVAAVIDEAIELAKKFSTEN 119 Query: 119 SHKFVNGVLDK 129 S +F+NG+LD+ Sbjct: 120 SSRFINGLLDQ 130 >UniRef50_C8PI00 Transcription antitermination factor NusB n=1 Tax=Campylobacter gracilis RM3268 RepID=C8PI00_9PROT Length = 342 Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/135 (36%), Positives = 74/135 (54%), Gaps = 11/135 (8%) Query: 4 AARRRARECAVQALYSWQLSQN--DIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 A R +AR A+ LYS ++ D AD ++L E+ +++ + LL G + N A Sbjct: 2 ATRHQARLAAISLLYSRDMNGGGEDFAD---EYLEEKRIRNEQRNWTLALLRGASENLAA 58 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D L+ L L E+ +E+A+LR+ YEL + +D + INEAI AK G S Sbjct: 59 VDALIDENLKEFKLAEISALERAILRLGAYEL-RFTDTDAGIVINEAINSAKELGI--SP 115 Query: 121 KFVNGVLD--KAAPV 133 +F+NGVLD K +PV Sbjct: 116 RFINGVLDALKDSPV 130 >UniRef50_B0REX0 N utilization substance protein B homolog n=4 Tax=Actinobacteria (class) RepID=NUSB_CLAMS Length = 137 Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/132 (32%), Positives = 73/132 (55%), Gaps = 4/132 (3%) Query: 4 AARRRARECAVQALYSWQLSQNDIAD---VEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 +AR +AR+ A+ LY + I VE Q A + + Y RE+ G + Sbjct: 2 SARTKARKRALDVLYVADIRGESIPATLAVEQQRAAAEPDRQASWAYAREIAEGFVEHQD 61 Query: 61 YLDGLMKPY-LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D L++ Y ++ L + V++A+LRI ++E+ +DVP VAI+E+++LA S ++S Sbjct: 62 EIDELIETYSVNWTLARMPAVDRAILRIGIWEILFNADVPDGVAISESVDLASSLSTDES 121 Query: 120 HKFVNGVLDKAA 131 FVNG+L + A Sbjct: 122 ASFVNGMLARIA 133 >UniRef50_A5ZPE1 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=A5ZPE1_9FIRM Length = 180 Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 46/133 (34%), Positives = 72/133 (54%), Gaps = 9/133 (6%) Query: 6 RRRARECAVQALYSWQL-SQNDIAD---VEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 R RE + L+ Q S+N+++D + + L E + KD + + + + + Sbjct: 3 RSEQREHIFKLLFMTQFNSENEMSDQVSMYFDTLGELEEKDQEAIQNK--YQHILEHLDE 60 Query: 62 LDGLMKPYLSR--LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D ++ Y SR + +V+ LR+A+YE+ +VP VAINEA+ELAK FG EDS Sbjct: 61 IDQILNEY-SRGWKTTRMNRVDLTALRLAVYEMKMDEEVPVGVAINEAVELAKLFGGEDS 119 Query: 120 HKFVNGVLDKAAP 132 FVNG+L K A Sbjct: 120 GSFVNGILGKIAS 132 >UniRef50_A6DTV7 NusB antitermination factor n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DTV7_9BACT Length = 156 Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/153 (32%), Positives = 78/153 (50%), Gaps = 23/153 (15%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQ------FLAE---------QDVKDVDV 45 +K R R+ A+Q LY Q+DIA +E+Q F+ + + Sbjct: 5 IKRNPRSLGRKWALQYLY-----QSDIAKLEFQEEEFALFIDQIENAPSAPNEHESSKGF 59 Query: 46 LYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSK-RSDVPYKVA 103 + RE++ GV +D + ++ + ++ VLRIA++EL + +S+ P V Sbjct: 60 AFAREIIQGVLDKVKEIDAYITEEAKNWKIDRMATTDRNVLRIAVFELMEIKSNHPV-VI 118 Query: 104 INEAIELAKSFGAEDSHKFVNGVLDKAAPVIRP 136 +NEA+ELAK+FG DS KFVNG+ D A +RP Sbjct: 119 VNEAVELAKTFGNTDSFKFVNGIGDTLARKLRP 151 >UniRef50_C6QHP1 NusB antitermination factor n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QHP1_9RHIZ Length = 170 Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 46/136 (33%), Positives = 76/136 (55%), Gaps = 12/136 (8%) Query: 14 VQALYSWQLSQNDIADVEYQFLAEQ---DVKD-----VDVLYFRELLAGVATNTAYLDGL 65 VQALY ++ D+ DV +FL E+ D +D D ++F ++L V +D + Sbjct: 23 VQALYQMDMAGTDLNDVIAEFLNERLSGDNRDEMLAGADRVFFADILRAVVRRQREIDPM 82 Query: 66 MKPYLS---RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + L+ RL+ + + +A+LR + EL R DVP +VAI+E + +A+ F E+ + Sbjct: 83 IDEQLAVGWRLVR-VDSILRAILRGGVAELVDRYDVPARVAISEYVNVARVFFDEEEPRV 141 Query: 123 VNGVLDKAAPVIRPNK 138 VNGVLDK A +R ++ Sbjct: 142 VNGVLDKLARRLRTSE 157 >UniRef50_Q7USA9 N utilization substance protein B homolog n=2 Tax=Planctomycetaceae RepID=NUSB_RHOBA Length = 145 Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/130 (34%), Positives = 69/130 (53%), Gaps = 3/130 (2%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQ-DVKDVDVLYFRELLAGVATNTA 60 + + RRRARE +Q LY L+ A +F+ + + V + ELL G Sbjct: 4 RMSTRRRAREIVLQLLYEADLNDWRDAATSRKFIRSRLQGRKVLTDFAAELLDGTMARRD 63 Query: 61 YLDG-LMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D L K + L + ++ VLR+ YE+ S P +VAI+EA+ LAK +G E+S Sbjct: 64 DIDAKLTKLSTNWALHRMPVTDRNVLRLGAYEILY-SGTPGQVAISEALTLAKRYGGENS 122 Query: 120 HKFVNGVLDK 129 +F+NGVLD+ Sbjct: 123 PRFINGVLDR 132 >UniRef50_A6CAX2 Transcription antitermination protein NusB n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CAX2_9PLAN Length = 171 Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 44/126 (34%), Positives = 70/126 (55%), Gaps = 4/126 (3%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFR-ELLAGVATNTAYLD- 63 R++AR VQ LY L+ DI+ E + + E+ ++ F EL GV LD Sbjct: 4 RKQARFLVVQMLYQIDLNP-DISINEIREMIEEHGRNKTARTFAWELFTGVMEFKQQLDE 62 Query: 64 GLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 +++ + L+ + ++ +LR+ YEL +D P V I+EA+ELA+ FG+ S +FV Sbjct: 63 HIVRVAENWTLKRMAVTDRNILRLGTYELL-HTDTPPAVVIDEAVELAREFGSAHSSQFV 121 Query: 124 NGVLDK 129 NG+LDK Sbjct: 122 NGILDK 127 >UniRef50_D0WFZ4 Transcription antitermination factor NusB n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WFZ4_9ACTN Length = 218 Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 41/126 (32%), Positives = 68/126 (53%), Gaps = 7/126 (5%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVL--YFRELLAGVATNTAYLDGLM 66 R A LY ++ I + L E D+ + L Y R LL G + + A +D ++ Sbjct: 12 GRRSAASVLYQSEI----IGKPVDRILEEGDIPEEAGLNEYGRLLLLGFSAHRAEIDRII 67 Query: 67 KPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 + + + V++ +LRI +YE+ VP V+INEA+E+AK FG +DS++F+NG Sbjct: 68 SERSANWAVNRMPMVDRELLRITVYEMKYVDAVPIPVSINEAVEIAKEFGGDDSYRFING 127 Query: 126 VLDKAA 131 +L + A Sbjct: 128 LLGRVA 133 >UniRef50_Q03FZ6 N utilization substance protein B homolog n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=NUSB_PEDPA Length = 133 Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 75/129 (58%), Gaps = 4/129 (3%) Query: 6 RRRARECAVQALYSWQLSQN-DIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 R + RE A + +++ + + D+++++ Q L E + + ++L+ GV+ N ++ Sbjct: 5 RHQIRESAFKIIFAKSANPDADLSELQDQVLEEFHETEAPDQFLKDLVMGVSLNLEAINE 64 Query: 65 LMKPYLSR--LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + L + ++ L ++ +L++ YE+ K ++ P KVAINEA+ELAK + ED+ KF Sbjct: 65 TISGELKKGWTVKRLESPDRVILQMGTYEI-KYTETPDKVAINEALELAKKYTDEDARKF 123 Query: 123 VNGVLDKAA 131 +NGVL A Sbjct: 124 INGVLSNIA 132 >UniRef50_UPI0001BC6038 transcription antitermination protein NusB n=3 Tax=Fusobacterium RepID=UPI0001BC6038 Length = 138 Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 73/128 (57%), Gaps = 4/128 (3%) Query: 5 ARRRARECAVQALYSWQLSQNDIAD-VEYQFLAEQDVKD-VDVLYFRELLAGVATNTAYL 62 RR ARE + ++ ++ N + EY L E+ KD V L+ G+A + + Sbjct: 6 TRREAREELFKWIFQTEIQGNSMEKAFEYSSLREEIEKDEVTKLFLERYRKGLAEHREEI 65 Query: 63 DGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 + ++ ++ +G VEK++L++A+YE+ D+P ++ +NEA+E+AK +G +H+ Sbjct: 66 ETKIQAAMTDWDFSRIGYVEKSLLKLAVYEMY-FEDLPVEIIVNEAVEIAKIYGDVKTHE 124 Query: 122 FVNGVLDK 129 F+NGVL K Sbjct: 125 FINGVLAK 132 >UniRef50_B9XNZ3 NusB antitermination factor n=1 Tax=bacterium Ellin514 RepID=B9XNZ3_9BACT Length = 185 Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 54/90 (60%), Gaps = 2/90 (2%) Query: 51 LLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIE 109 L+ G + D +K Y L + V++ +LR+A++E+ R D+P V+INEA++ Sbjct: 93 LIRGALEHRDEADAQIKKYAENWDLHRIAAVDRNILRLAIFEMLHREDIPPVVSINEAVD 152 Query: 110 LAKSFGAEDSHKFVNGVLDK-AAPVIRPNK 138 +AK F +S KFVNG+LDK ++RP + Sbjct: 153 IAKKFSTYESGKFVNGILDKIKGELMRPAR 182 >UniRef50_C9RN69 NusB antitermination factor n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RN69_FIBSS Length = 146 Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 42/128 (32%), Positives = 70/128 (54%), Gaps = 1/128 (0%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 M + R AR A+Q LY+ ++S +AD L Q ++D Y +L+ V + A Sbjct: 1 MAQVSFRPARVFAMQLLYAMEISGGTVADALPGVLEAQPLQDNMKKYGMKLVDLVLAHKA 60 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 LD ++ + +E + +++ VLRIA+ EL ++P KV I+EA+++A F + S Sbjct: 61 ELDSEIEACSAHWGIERMATLDRIVLRIAMVELLYVPEIPMKVVISEAVQVAAKFSTDSS 120 Query: 120 HKFVNGVL 127 FVNG+L Sbjct: 121 GTFVNGLL 128 >UniRef50_A8TL32 NusB antitermination factor n=1 Tax=alpha proteobacterium BAL199 RepID=A8TL32_9PROT Length = 139 Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 39/102 (38%), Positives = 55/102 (53%), Gaps = 2/102 (1%) Query: 39 DVKDVDVLYFRELLAGVATNTAYLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRS 96 D+ D +F L+ GVA LDG++ L LE L V +A+ R+ YEL Sbjct: 28 DMAPADPKFFERLVLGVAGEMPTLDGMLADCLQPEGHLERLEVVLRAIFRLGTYELLSVD 87 Query: 97 DVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 DVP +V I+E ++L +F A VNGVLDK A V+R ++ Sbjct: 88 DVPVRVVISEYVDLTHAFFAGREPGLVNGVLDKIARVVREDE 129 >UniRef50_C2D814 Putative uncharacterized protein n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D814_9ACTN Length = 239 Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 44/138 (31%), Positives = 71/138 (51%), Gaps = 7/138 (5%) Query: 4 AARRRARECAVQALYSWQLSQNDIADV--EYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 A R AR A+Q ++ + + DV L+E + D + + L G Sbjct: 11 AGRTLARSQALQLMFQAESRNMQVCDVLATNYLLSEGPLDD----FGKRLALGTDELRDK 66 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD L+ ++ L L V++ +LR+ALYE+ K DV V INE++ LAK++G ++S Sbjct: 67 LDALISRVITNWNLNRLLSVDRNILRLALYEMIKVDDVDIAVTINESVNLAKAYGTDESS 126 Query: 121 KFVNGVLDKAAPVIRPNK 138 FVNGVL + A ++ + Sbjct: 127 HFVNGVLGQVARMMENGR 144 >UniRef50_C5NYK7 Transcription antitermination factor NusB n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NYK7_9BACL Length = 131 Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 72/125 (57%), Gaps = 7/125 (5%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 +R RE + L+ Q+ ++ +E L ++++ +Y + L + +D Sbjct: 3 SRHELREAVFKILF--QVENTELDFIELLDLEQEEISTS--IYVNKTLTEILEKKEEIDE 58 Query: 65 LMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED-SHKF 122 ++ L LE L ++++ +LRI+ YE+ SD+PYKV+INEA+EL+K + +D S+KF Sbjct: 59 IISNNLKDWKLERLSKMDRQILRISAYEIL-YSDIPYKVSINEAVELSKKYSEKDESYKF 117 Query: 123 VNGVL 127 +NGVL Sbjct: 118 INGVL 122 >UniRef50_A1ZKP0 NusB antitermination factor n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZKP0_9SPHI Length = 462 Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 1/91 (1%) Query: 42 DVDVLYFRELLA-GVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPY 100 D DV++++ L V N Y D + K + +E L ++K +L++A+ E+ +P Sbjct: 352 DEDVVFYKNLYNFNVEGNQRYEDIIAKKTKNWDIERLALIDKVILKMAICEMINFYSIPV 411 Query: 101 KVAINEAIELAKSFGAEDSHKFVNGVLDKAA 131 KV INE IELAK++ S KFVNG+LD A Sbjct: 412 KVTINEYIELAKTYSTPKSKKFVNGLLDSIA 442 >UniRef50_Q0APG4 N utilization substance protein B homolog n=3 Tax=Alphaproteobacteria RepID=NUSB_MARMM Length = 160 Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 46/136 (33%), Positives = 69/136 (50%), Gaps = 10/136 (7%) Query: 13 AVQALYSWQLSQNDIADV-----EYQFLAEQDVKD---VDVLYFRELLAGVATNTAYLDG 64 AVQALY ++ + V E++F A + + D +F L+AGV A +D Sbjct: 24 AVQALYQMEIGGLGASAVIREFREHRFGACGEAPEFVEADEDFFESLVAGVVERQADVDP 83 Query: 65 LMKPYLSR--LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 M L+ LE L +A+LR+ +EL R DVP +V I+E IE+A +F KF Sbjct: 84 AMDALLADKWRLERLDATVRAILRVGGFELLYRKDVPARVVIDEYIEVANAFFEGAEPKF 143 Query: 123 VNGVLDKAAPVIRPNK 138 +N D+ A RP++ Sbjct: 144 INAAFDRCARGARPDE 159 >UniRef50_B0K9D9 N utilization substance protein B homolog n=10 Tax=Thermoanaerobacterales RepID=NUSB_THEP3 Length = 140 Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 68/123 (55%), Gaps = 3/123 (2%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R ARE V+ LY + +S+ I+ + F E+D + Y + G + +D Sbjct: 3 RTEAREWVVKMLYQYDVSRLPISKILENFYKEKDPGE-QKEYIENTVIGAIEHLEEIDKE 61 Query: 66 MKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 ++ Y L + +++ A+LR ++YE+ + ++P ++INEA+E+AK + EDS F+N Sbjct: 62 IERYSQNWALNRMPKIDLAILRCSIYEM-QYGNIPVNISINEAVEIAKKYSTEDSPAFIN 120 Query: 125 GVL 127 G+L Sbjct: 121 GLL 123 >UniRef50_B3QJK9 N utilization substance protein B homolog n=9 Tax=Alphaproteobacteria RepID=NUSB_RHOPT Length = 174 Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 75/151 (49%), Gaps = 16/151 (10%) Query: 1 MKPAARRRA------RECAVQALYSWQLSQNDIADV--EYQ-FLAEQDVKDVDVL----- 46 M P R+A R AVQALY + I + E++ F +V+ L Sbjct: 17 MTPKGERKANRRGAARLAAVQALYQMDIGGAGINETFAEFESFWIGNEVEGEQYLPAEAA 76 Query: 47 YFRELLAGVATNTAYLDGLMKPYLSR--LLEELGQVEKAVLRIALYELSKRSDVPYKVAI 104 +FR+++AGV +D L+ L+R L + + +AV+R YEL R D+P +V + Sbjct: 77 FFRDIVAGVVREQKQIDPLIDDLLARGWPLARIDAILRAVMRAGAYELEHRKDIPARVVV 136 Query: 105 NEAIELAKSFGAEDSHKFVNGVLDKAAPVIR 135 +E +++A +F +D VN VLD+ A R Sbjct: 137 SEYVDVAHAFVEKDETGMVNAVLDQIARRFR 167 >UniRef50_Q2JHC7 N utilization substance protein B homolog n=3 Tax=Bacteria RepID=NUSB_SYNJB Length = 291 Score = 61.6 bits (148), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 33/84 (39%), Positives = 53/84 (63%), Gaps = 1/84 (1%) Query: 47 YFRELLAGVATNTAYLDG-LMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAIN 105 Y +LL + T+ +D L K + L+ +G++E+ +LR+A+ E+ + P KVAIN Sbjct: 185 YALQLLTALRTHKEAIDARLQKALVGWQLQRVGRIERDILRLAVVEMEILASSPVKVAIN 244 Query: 106 EAIELAKSFGAEDSHKFVNGVLDK 129 EA+ELAK +G ++ FVNGVL + Sbjct: 245 EAVELAKKYGDPEAAAFVNGVLRR 268 >UniRef50_C8WEQ4 NusB antitermination factor n=4 Tax=Zymomonas mobilis RepID=C8WEQ4_ZYMMN Length = 157 Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 70/141 (49%), Gaps = 10/141 (7%) Query: 5 ARRRARECAVQALYSWQLSQ---NDIADVEYQFLAEQDVKDVDVL-----YFRELLAGVA 56 AR AR AVQALY ++ + N + D +Q+ ++D +F +++ GV Sbjct: 12 ARSAARLAAVQALYQREMEKTPLNILLDEFHQYRLGATIEDATYTKAEPSFFDDIVRGVG 71 Query: 57 TNTAYLDGLMKPYLSRL--LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 T +D ++ LS L+ L + + +LR YEL R DVP I+E I++A +F Sbjct: 72 TRCEEIDRVISENLSERWSLDRLDRPMRQILRAGTYELLARPDVPTATIISEYIDVANAF 131 Query: 115 GAEDSHKFVNGVLDKAAPVIR 135 FVNG+LD A +R Sbjct: 132 YDRQEKNFVNGLLDTVAKKLR 152 >UniRef50_B2A534 N utilization substance protein B homolog n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=NUSB_NATTJ Length = 139 Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 33/131 (25%), Positives = 77/131 (58%), Gaps = 4/131 (3%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFL---AEQDVKDVDVLYFRELLAGVATNTAY 61 +RR ARE +++ ++ + + + +V + + A++++ + Y +++ +N Sbjct: 2 SRRTAREASMKLVFQMAFNDDHVDEVGAEDILAQAKEELNYNNYQYIETVVSRTESNLQK 61 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D ++ + ++ L +V+ ++LR+A+ E+ D+P +V+INEA+ELAK F + + Sbjct: 62 IDEYIEKFSENWKIDRLSKVDLSILRLAISEILFFDDIPTRVSINEAVELAKKFSTDKAS 121 Query: 121 KFVNGVLDKAA 131 ++NG+LD+ A Sbjct: 122 GYINGILDQVA 132 >UniRef50_A7VX44 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VX44_9CLOT Length = 134 Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 68/128 (53%), Gaps = 5/128 (3%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYF-RELLAGVATNTAYLDG 64 R ARE A ++ + A +E + Q +D+ + F + + GV + +DG Sbjct: 3 RHEAREQAFFLIFERTFQE---ASLEELVESAQLARDITICGFAQNVFHGVEKHGEEIDG 59 Query: 65 LMKPY-LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 +++ + + L +V +VLR A+YE+ +P V+INEA+E+AK++G+ + FV Sbjct: 60 MIEKHCIGWTKNRLSRVAVSVLRTAVYEMLYEEKIPVSVSINEAVEIAKTYGSTEDASFV 119 Query: 124 NGVLDKAA 131 NGVL A Sbjct: 120 NGVLGSVA 127 >UniRef50_Q0AZF7 N utilization substance protein B homolog n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=NUSB_SYNWW Length = 134 Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/128 (33%), Positives = 71/128 (55%), Gaps = 5/128 (3%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNTAYLD 63 +RR+ARE A + ++ Q D A + +L D + + + + +L+ G A +D Sbjct: 2 SRRKARETAFKVVFQVDQVQAD-AKKAFDYLVLHDKLAEKNQGFSWDLIQGTLEKQAEID 60 Query: 64 GLMKPYLSR--LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 ++ Y SR L+ + V++ ++R+A YE+ D VAI+EAIE+AK +G E S Sbjct: 61 QMIASY-SREWALDRMSSVDRNIMRVAAYEILYLEDSQAVVAIDEAIEIAKKYGDEGSGS 119 Query: 122 FVNGVLDK 129 FVN +LDK Sbjct: 120 FVNAILDK 127 >UniRef50_UPI0000D5356A transcription termination factor (NusB) n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D5356A Length = 127 Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 32/81 (39%), Positives = 49/81 (60%), Gaps = 1/81 (1%) Query: 50 ELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAI 108 EL+ G+A +D ++ L L V++ +LR+A YE+ +P + AINEAI Sbjct: 39 ELVKGIARELPLIDEAIEDSLENYSFGRLANVDRNILRLATYEILFADHIPGQAAINEAI 98 Query: 109 ELAKSFGAEDSHKFVNGVLDK 129 E+AK G+EDS F+NG+LD+ Sbjct: 99 EVAKRLGSEDSPSFINGILDR 119 >UniRef50_B0S1M1 N utilization substance protein B homolog n=2 Tax=Finegoldia magna RepID=NUSB_FINM2 Length = 137 Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 73/125 (58%), Gaps = 3/125 (2%) Query: 5 ARRRARECAVQALYSWQLSQN-DIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +RR++R+ A+Q +Y ++ + D +E +F Q++ D+ +F+E++ + + Sbjct: 2 SRRQSRKSAMQLIYEMNMNGDYDKQRIE-EFCKYQNINKNDIEFFKEIVLNFIEHIDDIV 60 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 +++ + L+ + +++ ++L++ + E+ P VAINEA+ELAK + E S+ F Sbjct: 61 NIIENNTKQWNLDRINKLDLSILQVGVCEILYVESTPDSVAINEAVELAKEYSTEKSYSF 120 Query: 123 VNGVL 127 +NG+L Sbjct: 121 INGIL 125 >UniRef50_A9KMC2 N utilization substance protein B homolog n=17 Tax=Bacteria RepID=NUSB_CLOPH Length = 132 Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 28/56 (50%), Positives = 40/56 (71%) Query: 74 LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 L +G+V+ ++R+A +E+ +VP KVAINEAIELAK +G + S FVNG+L K Sbjct: 74 LNRMGKVDLNIMRLATFEIRFDDEVPVKVAINEAIELAKKYGGDSSASFVNGILAK 129 >UniRef50_C9KK33 Transcription antitermination factor NusB n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KK33_9FIRM Length = 143 Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 71/135 (52%), Gaps = 13/135 (9%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEY--------QFLAEQDVKDV-DVLYFRELLAGV 55 +RR+ARE A+QAL+ L+ + AD E L E + D + +L+ G Sbjct: 2 SRRQAREVALQALFQLDLNPAESADQEEMQETLAIDTALGEAEAMSAHDRAFVAQLVHGT 61 Query: 56 ATNTAYLDGLMKPYLSR--LLEELGQVEKAVLRIALYELS-KRSDVPYKVAINEAIELAK 112 N +D + SR +E + V++ + R+A YE+ + +AINEA+ELAK Sbjct: 62 RANLEAIDAQIAAN-SREWKVERMAAVDRNLTRMATYEMCFAEEKLTPNIAINEAVELAK 120 Query: 113 SFGAEDSHKFVNGVL 127 +G +DS ++VNG+L Sbjct: 121 KYGTDDSSRYVNGIL 135 >UniRef50_B0MDS2 Putative uncharacterized protein n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0MDS2_9FIRM Length = 131 Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 27/56 (48%), Positives = 41/56 (73%) Query: 74 LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 ++ LG+ E +LRIA+YE+ D+P KVAINEA+EL+K++ E + F+NG+L K Sbjct: 74 IKRLGKAELTILRIAVYEIMFDEDIPDKVAINEAVELSKTYCNEKAASFINGILGK 129 >UniRef50_C9LLB0 Transcription antitermination factor NusB n=1 Tax=Dialister invisus DSM 15470 RepID=C9LLB0_9FIRM Length = 133 Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 45/132 (34%), Positives = 74/132 (56%), Gaps = 18/132 (13%) Query: 5 ARRRARECAVQALYSWQLSQN------DIADVEYQFLAEQDVKDVDVLYFRELLAGVATN 58 +R +ARE A++ LY+ +++ N DI+D L+E+ D L + V + Sbjct: 2 SRSKAREHALKVLYAKEINPNTAELSADISDA----LSEKGKSFSDFL-----VEQVQLH 52 Query: 59 TAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYEL--SKRSDVPYKVAINEAIELAKSFG 115 +DG + +L + L +L V+K +LRIA+ E + KV INEA+ELAK +G Sbjct: 53 RDEIDGEIVRFLKKWSLSQLNIVDKNILRIAIAEFNYTYEDKADRKVIINEAVELAKVYG 112 Query: 116 AEDSHKFVNGVL 127 E+S++F+NG+L Sbjct: 113 GENSYRFINGIL 124 >UniRef50_A7HX88 NusB antitermination factor n=1 Tax=Parvibaculum lavamentivorans DS-1 RepID=A7HX88_PARL1 Length = 171 Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 10/133 (7%) Query: 13 AVQALYSWQLSQNDIADVEYQFL--------AEQDVKDVDVLYFRELLAGVATNTAYLDG 64 AVQALY ++ + +V +F+ + ++ D ++F +++ GV LD Sbjct: 26 AVQALYQMDIAATPLDEVVEEFVEHRLEEPEGDNEIFAADKVHFEDVVRGVVREQRELDV 85 Query: 65 LMKPYLSR--LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + L++ L L +A+LR YEL + DVP KV INE +E+A +F D Sbjct: 86 QVNSALAKGWSLARLDATLRAILRCGTYELRRCKDVPLKVVINEYVEIAHAFFEGDEPGV 145 Query: 123 VNGVLDKAAPVIR 135 VN VLD+ IR Sbjct: 146 VNAVLDRLGRDIR 158 >UniRef50_C5VC90 Transcription antitermination factor NusB n=2 Tax=Corynebacterium matruchotii RepID=C5VC90_9CORY Length = 312 Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 51/85 (60%), Gaps = 2/85 (2%) Query: 47 YFRELLAGVATNTAYLDGLMKPYLSR--LLEELGQVEKAVLRIALYELSKRSDVPYKVAI 104 Y E++AGVA +D ++ YL+ L + V++A+LR+A++E+ DVP K A+ Sbjct: 71 YTSEIIAGVAEELNRIDDVIAEYLAENWELSRISAVDRAILRVAVWEMIFNPDVPVKTAL 130 Query: 105 NEAIELAKSFGAEDSHKFVNGVLDK 129 +EA+ELA + + ++N VLD Sbjct: 131 SEAVELASQYSGASAPAYINAVLDS 155 >UniRef50_B3DQ30 N utilization substance protein B homolog n=7 Tax=Actinobacteridae RepID=NUSB_BIFLD Length = 190 Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 67/124 (54%), Gaps = 1/124 (0%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 AR AR+ A+ LY DI + + +A + Y E++ GVA + +D Sbjct: 2 ARSTARKRALNTLYEADEKSQDILSLLDERIAHPGAQTPLPDYAIEIVKGVAEHRRQIDM 61 Query: 65 LMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 + + + + +G V++ +LRIA +E+ DVP KVAI+EA+ LAK+ +DS F+ Sbjct: 62 TLDEHSTGWKVRRMGVVDRNILRIAAWEILFTDDVPDKVAIDEALALAKTLCDDDSPAFI 121 Query: 124 NGVL 127 +G+L Sbjct: 122 HGLL 125 >UniRef50_A0JX79 N utilization substance protein B homolog n=3 Tax=Actinomycetales RepID=NUSB_ARTS2 Length = 136 Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 1/84 (1%) Query: 47 YFRELLAGVATNTAYLDGLMKPY-LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAIN 105 Y E++ GV ++ A +D ++ Y LE + V++ +LRI +EL DVP VA++ Sbjct: 43 YTLEIVEGVVSHQAAIDEFLETYSQGWTLERMPSVDRIILRIGTWELLYNDDVPDGVAVS 102 Query: 106 EAIELAKSFGAEDSHKFVNGVLDK 129 EA+ LAK+ ++S F+NG+L + Sbjct: 103 EAVALAKTLSTDESPSFINGLLGR 126 >UniRef50_B0SB76 N utilization substance protein B homolog n=6 Tax=Leptospira RepID=NUSB_LEPBA Length = 140 Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 3/127 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQF-LAEQDVKDVDVLYFRELLAGVATNTAYL 62 ++R R R A+ LY L D D +F ++ + + Y L+ GV N + Sbjct: 2 SSRHRGRSLALMCLYQIDLVGTD-PDRAMKFDWYDKKITREEKDYAVFLVKGVVENRKAI 60 Query: 63 DGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D L+K Y L + V + +LR+++ L K + V INEA+EL K F E+S + Sbjct: 61 DTLIKKYSENWELSRISVVNRCILRLSILSLQKEPFLAAPVVINEAVELTKEFETEESAQ 120 Query: 122 FVNGVLD 128 F+NG+LD Sbjct: 121 FINGLLD 127 >UniRef50_Q2J830 N utilization substance protein B homolog n=3 Tax=Frankia RepID=NUSB_FRASC Length = 135 Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 42/119 (35%), Positives = 60/119 (50%), Gaps = 16/119 (13%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R AV + + +L+Q+D EY EL+ GV +D + Y Sbjct: 2 RASAVPEILAARLAQSDPPVSEYAV---------------ELVEGVVERRGEIDERIARY 46 Query: 70 L-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 LE + V++ +LRIA+ EL R DVP +VAI+EA+ELAK+ S FVNG+L Sbjct: 47 AEGWTLERMPPVDRNILRIAVLELLWRPDVPDRVAIDEAVELAKNLSTHRSPAFVNGLL 105 >UniRef50_Q4JVG6 N utilization substance protein B homolog n=5 Tax=Corynebacterium RepID=NUSB_CORJK Length = 202 Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 71/131 (54%), Gaps = 6/131 (4%) Query: 4 AARRRARECAVQALYSWQLSQNDIADV--EYQFLAEQDVKDVDVL--YFRELLAGVATNT 59 +R +AR AV L+ + D ++ E LA+ V + Y ++++ GVATN Sbjct: 21 GSRYKARRRAVDILFEAEFRDIDPVEIVEERISLAKDSANQVKPVPEYTQQIVPGVATNL 80 Query: 60 AYLDGLMKPYLSR--LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 LD + +LS L+ L V++AVLR+A +EL DVP +VA+ E +ELA + + Sbjct: 81 DALDEAIALHLSSDWQLDRLPAVDRAVLRVAAWELKFNDDVPPQVAVVEGVELASEYSHD 140 Query: 118 DSHKFVNGVLD 128 + +++ VLD Sbjct: 141 KAPSYIHAVLD 151 >UniRef50_Q1AW09 N utilization substance protein B homolog n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=NUSB_RUBXD Length = 139 Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 3/71 (4%) Query: 60 AYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 A LDG+ + + + + V++ +LR+ALYE+ DVP +VA+NEA+ELAK F E++ Sbjct: 58 AVLDGVSEGWP---VWRMSAVDRTILRLALYEMLHVQDVPPEVAVNEAVELAKGFSGEEA 114 Query: 120 HKFVNGVLDKA 130 FV GVL A Sbjct: 115 PSFVGGVLRGA 125 >UniRef50_C9LUP3 Transcription antitermination factor NusB n=2 Tax=Selenomonas RepID=C9LUP3_9FIRM Length = 160 Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 46/134 (34%), Positives = 75/134 (55%), Gaps = 11/134 (8%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVE--YQFLA-EQDVKDV------DVLYFRELLAGV 55 +RR+ARE A+Q L+ +L+ A E Q A + V+++ D Y L+ G Sbjct: 22 SRRQAREAALQTLFQLELNPPSEAASEEACQMWALDAAVEEMPVETKRDYSYAASLVRGT 81 Query: 56 ATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSD-VPYKVAINEAIELAKS 113 + A +D + L+ + V++ ++RIALYE+ ++ V +AINEA+ELAK Sbjct: 82 REHLAAIDEEIAASTHDWKLDRMTGVDRNIVRIALYEMKYGAEKVDVGIAINEAVELAKK 141 Query: 114 FGAEDSHKFVNGVL 127 FG +DS ++VNG+L Sbjct: 142 FGTDDSSRYVNGIL 155 >UniRef50_UPI00016C434C transcription antitermination protein NusB n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C434C Length = 139 Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 43/120 (35%), Positives = 64/120 (53%), Gaps = 4/120 (3%) Query: 14 VQALYSWQLSQNDIA-DVEYQFLAEQDVKDVDV-LYFRELLAGVATNTAYLDGLMKPYLS 71 +Q L+ W + + QF ++ + D ++ Y L GVA +D +K + Sbjct: 3 LQLLFQWDQNPTKVPRKAIQQFARDRLLGDAEMSTYALSLYDGVAGRKDAIDEALKSAAT 62 Query: 72 RL-LEELGQVEKAVLRIALYEL-SKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 L + V++ VLR+ +EL + P +V INEAIELAK FG+EDS FVNGVLD+ Sbjct: 63 NWRLTRMTPVDRNVLRLGAFELLFDAAPQPLEVVINEAIELAKRFGSEDSPAFVNGVLDR 122 >UniRef50_Q5FNA1 N utilization substance protein B homolog n=1 Tax=Gluconobacter oxydans RepID=NUSB_GLUOX Length = 160 Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 69/142 (48%), Gaps = 17/142 (11%) Query: 2 KPAARRR--ARECAVQALYSWQLSQNDIADVEYQFLAEQ-----------DVKDVDVLYF 48 P R R AR AVQAL+ + S + V QF+ + + D D+ F Sbjct: 10 NPTRRSRTIARVAAVQALFQCEQSGDTAETVISQFIRHRRISSTASFDDGHIPDADLKLF 69 Query: 49 RELLAGVATNTAYLDGLMKPYLSRL--LEELGQVEKAVLRIALYELSKRSDVPYKVAINE 106 +E++ GV +D + L L L V +A+LR A++E+ +D P ++ INE Sbjct: 70 QEIVLGVTRRQDDIDAKLSDVLPEQWPLPRLDPVLRALLRAAVFEIG--TDTPDRIIINE 127 Query: 107 AIELAKSFGAEDSHKFVNGVLD 128 +++A F + D K VNG+LD Sbjct: 128 YLDVAHGFFSGDEPKMVNGILD 149 >UniRef50_B0NZC1 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0NZC1_9CLOT Length = 167 Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 30/56 (53%), Positives = 39/56 (69%) Query: 74 LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 LE LG+ E ++LR+A YE+ VP KVAINEA+ELAK + E + F+NGVL K Sbjct: 104 LERLGKAELSILRLATYEILLDEQVPRKVAINEAVELAKKYCNEKAAPFINGVLSK 159 >UniRef50_Q8DKS0 N utilization substance protein B homolog n=1 Tax=Thermosynechococcus elongatus BP-1 RepID=NUSB_THEEB Length = 212 Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 29/63 (46%), Positives = 45/63 (71%), Gaps = 1/63 (1%) Query: 74 LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPV 133 LE L Q+++A++ IA+ E+ + +V +VAINEAIELAK + E SH+F+NGVL + + Sbjct: 144 LERLTQLDRAIIEIAVVEM-RYLEVAKQVAINEAIELAKRYSDEGSHRFINGVLRRISEA 202 Query: 134 IRP 136 + P Sbjct: 203 LDP 205 >UniRef50_A0LUG6 N utilization substance protein B homolog n=2 Tax=Actinomycetales RepID=NUSB_ACIC1 Length = 145 Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 39/124 (31%), Positives = 68/124 (54%), Gaps = 3/124 (2%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 AR +AR+ A+ L+ L D ++ A D + Y L+ GVA + A +D Sbjct: 3 ARTKARKRALDVLFEADLRAADPLEILADHTARADTPVPE--YAVRLVEGVAAHRAEIDR 60 Query: 65 LMKPY-LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 +++ + + L+ + V++ +LR+A+YEL ++VP V + EA++LA+ +S FV Sbjct: 61 IIEQFAVGWTLQRMPTVDRNILRLAIYELLWVTEVPDAVVLAEAVKLAQDLSTAESAPFV 120 Query: 124 NGVL 127 NGVL Sbjct: 121 NGVL 124 >UniRef50_C4DFR3 Transcription antitermination factor NusB n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DFR3_9ACTO Length = 147 Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 47/128 (36%), Positives = 70/128 (54%), Gaps = 5/128 (3%) Query: 5 ARRRARECAVQALYSWQLSQNDIADV--EYQFLAEQDVKDVDVL-YFRELLAGVATNTAY 61 ARR+AR+ AV LY + I V + + LA D + + Y EL+ GVA Sbjct: 11 ARRKARKRAVDVLYEAEQRDEPIRRVLEDRRKLAVTDPQMPGIPEYTFELVDGVAEYLDE 70 Query: 62 LDGLMKPYLSR--LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D ++ L L+ + V++ +LR+A +EL R DV VAI+EA+++A+ EDS Sbjct: 71 VDDVIARCLHSGWYLDRIAAVDRNILRVAAFELRYREDVDAAVAISEAVKIAEVLCGEDS 130 Query: 120 HKFVNGVL 127 FVNGVL Sbjct: 131 PAFVNGVL 138 >UniRef50_Q030T8 Transcription termination factor n=3 Tax=Lactococcus lactis RepID=Q030T8_LACLS Length = 325 Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 34/83 (40%), Positives = 51/83 (61%), Gaps = 3/83 (3%) Query: 47 YFRELLAGVATNTAYLDGLMKPYLSR--LLEELGQVEKAVLRIALYELSKRSDVPYKVAI 104 YF +L+ GV L+ + YL++ L VE+A+L+++ YE+ +D P VA+ Sbjct: 237 YFTQLVDGVLEKKEDLEINISKYLAKNWSFSRLTLVEQAILQVSTYEIL-FTDTPNVVAV 295 Query: 105 NEAIELAKSFGAEDSHKFVNGVL 127 NEAIEL+K F E S +F+NGVL Sbjct: 296 NEAIELSKDFSDEKSSRFINGVL 318 >UniRef50_B0PBD5 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PBD5_9FIRM Length = 161 Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 65/123 (52%), Gaps = 3/123 (2%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R +RE A ++ I ++ Q ++++ VD +R L + V N +LD Sbjct: 3 RSESREQAFMLIFERSFKDESIDEIIEQAAIGRNLQ-VDDYAYR-LASDVCGNLPWLDEA 60 Query: 66 MKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + Y + + + +V ++LR++L+E+ VP +INEA+ELAK +G +D FVN Sbjct: 61 IASYSKKWKINRMSRVALSILRLSLWEIDHVDTVPAGASINEAVELAKKYGNDDDFSFVN 120 Query: 125 GVL 127 GVL Sbjct: 121 GVL 123 >UniRef50_C4V2M6 Transcription antitermination protein NusB n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V2M6_9FIRM Length = 137 Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 69/130 (53%), Gaps = 9/130 (6%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDV---DVLYFRELLAGVATNTAY 61 +RR ARE A+ L+ + + V LA V + D+ Y L+ G + Sbjct: 2 SRRHAREAALLTLFQREFDHDRPPIVAAGDLASDAVDGLTEKDLAYANRLVQGTCSVQPE 61 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELS---KRSDVPYKVAINEAIELAKSFGAE 117 +D ++ L + V++ ++R+A YE+ +R D P +AINEA+ELAK +G++ Sbjct: 62 IDAAIECMAKEWKLHRMAPVDRNLIRMAYYEMCYQEERIDPP--IAINEAVELAKKYGSD 119 Query: 118 DSHKFVNGVL 127 D+ ++VNG+L Sbjct: 120 DAGRYVNGIL 129 >UniRef50_UPI0001C3796F transcription termination factor n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C3796F Length = 138 Score = 58.2 bits (139), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 9/127 (7%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQD---VKDVDVLYFRELLAGVATNTAY 61 +RR R+ A + ++ L +DI ++ Y E D V D ++++ G + Sbjct: 2 SRREIRDSAFKLVFEQLLRDDDITEL-YDIAEEIDEIIVND----EVKKIVEGTLAHAEE 56 Query: 62 LDGLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD ++ Y SR L + ++ A+LRIA+YE + P AI+EAI LA ++ + Sbjct: 57 LDSIIAGYSKSRSLSRISKLNIAILRIAIYESLYDDNTPMNAAISEAINLANTYSYNEDS 116 Query: 121 KFVNGVL 127 KF+NGVL Sbjct: 117 KFINGVL 123 >UniRef50_C5SLV1 NusB antitermination factor n=2 Tax=Caulobacteraceae RepID=C5SLV1_9CAUL Length = 177 Score = 58.2 bits (139), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 15/142 (10%) Query: 5 ARRRARECAVQALYSWQLSQNDI-------------ADVEYQFLAEQDVKDVDVLYFREL 51 AR AR VQALY +++ + ++E + EQ + D +F + Sbjct: 32 ARTVARLVLVQALYQMEIAGTGVESVIREFADFRFDGNIEGECGEEQRLGTADEAFFADG 91 Query: 52 LAGVATNTAYLDGLMKPYLSR--LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIE 109 L + A +D L+ L+ L+ + +A+LR +EL R DV +V INE +E Sbjct: 92 LRTIVKAQAEIDVLIAERLASNWRLDRIDTTLRAILRAGAWELKFRPDVAVEVVINEYVE 151 Query: 110 LAKSFGAEDSHKFVNGVLDKAA 131 +AK+F + +FVNG LD A Sbjct: 152 IAKAFFGNEEARFVNGALDGIA 173 >UniRef50_P74395 N utilization substance protein B homolog n=16 Tax=Cyanobacteria RepID=NUSB_SYNY3 Length = 221 Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/56 (48%), Positives = 40/56 (71%), Gaps = 1/56 (1%) Query: 74 LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 L L ++++ +LR+A+ EL VP KVAINEA+ELAK + +D H+F+NGVL + Sbjct: 150 LSRLAKIDQDILRLAIAELDYLG-VPQKVAINEAVELAKRYSGQDGHRFINGVLRR 204 >UniRef50_C7H0C2 Transcription antitermination factor NusB n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H0C2_9FIRM Length = 135 Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 66/123 (53%), Gaps = 1/123 (0%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R +AR A+Q ++ + + + + L++ + Y RE+ + V N +D Sbjct: 5 RSKARTIAMQIIFQIPVHKTTDKVLVDKILSDYKNIGKEEAYIREVFSLVTDNIDAIDAE 64 Query: 66 MKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + + ++ + +V+ A+LR+A+ E+ D+P VA+NEA+ +AK F + S KF+N Sbjct: 65 LNAKMKGWTIDSIPKVDLAILRLAVAEICYAKDIPKVVAVNEAVRIAKKFSDDKSAKFIN 124 Query: 125 GVL 127 G+L Sbjct: 125 GIL 127 >UniRef50_C4G0T0 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G0T0_ABIDE Length = 138 Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 48/69 (69%), Gaps = 5/69 (7%) Query: 62 LDGLMKPY-LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +DG K + +SRL + + +LR+A+YE+ S++P KV++NEA+ELAK +G ++S Sbjct: 63 IDGASKKWRISRL----SKTDLMLLRVAVYEIKFDSEIPDKVSVNEAVELAKIYGGDESP 118 Query: 121 KFVNGVLDK 129 FVNGVL K Sbjct: 119 AFVNGVLAK 127 >UniRef50_D0BJY7 Transcription antitermination factor NusB n=2 Tax=Granulicatella RepID=D0BJY7_9LACT Length = 154 Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 19/145 (13%) Query: 2 KPAARRRARECAVQALYSWQ----LSQNDIADVEYQFLAEQDVKDVDVL----------- 46 P RR R A+QALY LS+ D + L ++ D +V Sbjct: 4 NPLKRRALRIIAIQALYQMDICKDLSEFDAVRLALDVLHDEQSFDEEVYSNEALLDEFPE 63 Query: 47 --YFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYEL-SKRSDVPYKV 102 Y +L+ GV +D L+ +L L + +++ ++R+A+ E+ S +VP V Sbjct: 64 IHYSLDLIQGVQNQLEEIDALISSHLKGWELNRIVRLDLMIMRVAVCEMRSPELEVPQTV 123 Query: 103 AINEAIELAKSFGAEDSHKFVNGVL 127 A+NEAIE+AK + E S KF+NGVL Sbjct: 124 ALNEAIEIAKLYSDEKSAKFINGVL 148 >UniRef50_Q9CHN4 N utilization substance protein B homolog n=1 Tax=Lactococcus lactis subsp. lactis RepID=NUSB_LACLA Length = 192 Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 3/83 (3%) Query: 47 YFRELLAGVATNTAYLDGLMKPYLSRL--LEELGQVEKAVLRIALYELSKRSDVPYKVAI 104 YF +L+ GV L+ + YL++ L VE+A+L+++ YE+ ++ P VA+ Sbjct: 106 YFTQLVDGVLDKKEDLEANISKYLTKTWSFSRLTLVEQAILQVSSYEI-LYTETPDVVAV 164 Query: 105 NEAIELAKSFGAEDSHKFVNGVL 127 NEA+EL+K F E S +F+NGVL Sbjct: 165 NEAVELSKDFSDEKSSRFINGVL 187 >UniRef50_A8RBL8 Putative uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=A8RBL8_9FIRM Length = 126 Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 68/131 (51%), Gaps = 15/131 (11%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVK------DVDVLYFRELLAGVATN 58 +R + RE A+ +LY L DI + Y+ ++ +D + +++ G Sbjct: 4 SRHKLREIAMTSLYQHFLLSKDIKECVYENTQSNEIDPFLYTITIDAIRYKDTYVG---- 59 Query: 59 TAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 ++D ++ + E LG VEKA+L +A EL + P + I+EA+ LAK + ED Sbjct: 60 --HIDETLRDDWT--FERLGYVEKAILLMAACELDFET-APKAIVIDEAVNLAKKYCDED 114 Query: 119 SHKFVNGVLDK 129 +++ +NGVLD+ Sbjct: 115 TYRLINGVLDR 125 >UniRef50_Q7NKZ0 N utilization substance protein B homolog n=1 Tax=Gloeobacter violaceus RepID=NUSB_GLOVI Length = 211 Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 1/84 (1%) Query: 47 YFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAIN 105 Y ELL LD L+ + +E L ++++ +LR+AL E+ + VP++VAI+ Sbjct: 115 YAFELLGAFVREGDNLDKLLDTCMEGWQVERLTRIDRDILRLALVEMVELKSVPFRVAID 174 Query: 106 EAIELAKSFGAEDSHKFVNGVLDK 129 EA+ELAK + + + +F+NGVL + Sbjct: 175 EAVELAKKYSTDTAVRFINGVLRR 198 >UniRef50_B5YE05 N utilization substance protein B homolog n=2 Tax=Dictyoglomus RepID=NUSB_DICT6 Length = 144 Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 62/123 (50%), Gaps = 8/123 (6%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R R RE +Q L+ L Q +VE F D + L G D + Sbjct: 5 RTRCREKVLQLLFQKDLGQ----EVEVDF---SDFSPQGQAFAYRLYDGALQYKDLADSI 57 Query: 66 MKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + + LE +G +E+ +LR+A+ E+ SD+P V +NEA+ELAK + + ++ +FVN Sbjct: 58 ISRFSKNWKLERMGALERNILRLAIAEMFTFSDIPQAVTVNEAVELAKKYVSPEAGRFVN 117 Query: 125 GVL 127 G+L Sbjct: 118 GIL 120 >UniRef50_B1W456 N utilization substance protein B homolog n=7 Tax=Streptomyces RepID=NUSB_STRGG Length = 143 Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/128 (32%), Positives = 67/128 (52%), Gaps = 4/128 (3%) Query: 4 AARRRARECAVQALYSWQLSQNDIADV--EYQFLAEQDVKDVDVLYFR-ELLAGVATNTA 60 AAR +AR+ A Q L+ + V ++ L+ D + V F EL+ G A Sbjct: 2 AARNKARKRAFQILFEADQRGESVQSVLADWVRLSRTDDRQPPVGEFTMELVEGYAQYAD 61 Query: 61 YLDGLMKPY-LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D L+ Y + ++ + V++++LR+ YEL P V I+EA++LAK F +DS Sbjct: 62 RIDDLIVTYAVDWEIDRMPVVDRSILRLGAYELIWMDGTPDAVVIDEAVQLAKEFSTDDS 121 Query: 120 HKFVNGVL 127 FVNG+L Sbjct: 122 PSFVNGLL 129 >UniRef50_Q6NH08 N utilization substance protein B homolog n=1 Tax=Corynebacterium diphtheriae RepID=NUSB_CORDI Length = 182 Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 75/134 (55%), Gaps = 6/134 (4%) Query: 4 AARRRARECAVQALYSWQLSQND-IADVEYQF-LAEQDVKDVDVL--YFRELLAGVATNT 59 +R +AR AV L+ ++ D +A VE + L+ + DV+ + Y +E+++G A Sbjct: 14 GSRYKARRRAVDILFEAEMRDIDPVAIVEDRVVLSRLNGTDVNQVPSYTKEIVSGAAMEL 73 Query: 60 AYLDGLMKPYLSR--LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 LD L+ +L+ LE + V++A+LR++++EL DVP AI E +ELA + + Sbjct: 74 DRLDELIAAHLAEDWSLERIMTVDRAILRVSVWELIFNPDVPLATAIIEGVELASEYSTD 133 Query: 118 DSHKFVNGVLDKAA 131 S +V+ +LD A Sbjct: 134 VSPAYVHALLDSIA 147 >UniRef50_C8W9W3 NusB antitermination factor n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8W9W3_ATOPD Length = 167 Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 71/129 (55%), Gaps = 9/129 (6%) Query: 5 ARRRARECAVQALYSWQLSQNDIADV---EYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 R RAR A+Q L+ + + + +V +Y L+E + + Y R L G Sbjct: 7 GRTRARSQALQLLFQAEATNRSVLEVLGGDYT-LSEGPLDE----YARLLAVGADGIRDD 61 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD ++ Y ++ + V++ +LRI+LYE+ K +V VAINE ++LA+++ +DS Sbjct: 62 LDDIIAAYSKDWSIDRMPSVDRNLLRISLYEILKVPEVDVAVAINEVVDLARAYCGDDSP 121 Query: 121 KFVNGVLDK 129 +F+NGVL + Sbjct: 122 RFINGVLGR 130 >UniRef50_C2KZE7 Putative uncharacterized protein n=1 Tax=Oribacterium sinus F0268 RepID=C2KZE7_9FIRM Length = 185 Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/51 (50%), Positives = 35/51 (68%) Query: 77 LGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 + + + VLR+ALYEL + + P KV NEA+E+AK +G DS FVNGVL Sbjct: 90 MSKTDLTVLRLALYELEYQEETPDKVVFNEAVEIAKKYGGADSGSFVNGVL 140 >UniRef50_Q01T72 N utilization substance protein B homolog n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=NUSB_SOLUE Length = 146 Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 63/119 (52%), Gaps = 6/119 (5%) Query: 14 VQALYSWQLSQNDIADV---EYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL 70 +Q L+ W + + D Y L + + D +L+ G + A +D + + Sbjct: 12 LQILFIWDARKQPVEDAINAYYDTLYSDEKPERDPFVI-DLVRGTVEHLAEVDDRITRHA 70 Query: 71 SRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 +E + V++ +LR+A+YE++ R P V I+EA+ELA+ F E+S +FVNGVLD Sbjct: 71 EHWRMERMPAVDRNILRLAVYEMT-RGGTPAPVTIDEALELARKFSNEESVQFVNGVLD 128 >UniRef50_D1Y3T9 Transcription antitermination factor NusB n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y3T9_9BACT Length = 174 Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/67 (41%), Positives = 45/67 (67%), Gaps = 1/67 (1%) Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D L++ Y + E + V++ ++R+ALYE VP VA++EA+ LAK +G++DS Sbjct: 98 IDALIETYSTEWKTERMSLVDRTIIRLALYEAVIAKKVPPGVALSEAVRLAKEYGSDDSS 157 Query: 121 KFVNGVL 127 +FVNGVL Sbjct: 158 RFVNGVL 164 >UniRef50_Q2W4S5 N utilization substance protein B homolog n=3 Tax=Magnetospirillum RepID=NUSB_MAGSA Length = 156 Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 70/140 (50%), Gaps = 8/140 (5%) Query: 4 AARRRARECAVQALYSWQLSQND----IADVEYQFLAEQD--VKDVDVLYFRELLAGVAT 57 A R AR AVQ LY +++ D + D + + AE + D D +++ GV+ Sbjct: 9 AKRSAARLAAVQVLYQMEMTGADTERALQDAKDRRAAEPKGRMADPDNSLLNQVVRGVSA 68 Query: 58 NTAYLDGLMKPYLSR--LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG 115 +DG + LS +E L V +A++R +ELS R P +V I+E +++A +F Sbjct: 69 QLEDIDGHVGRALSGDWTVERLEAVLRAIVRAGAWELSARPQTPARVCISEWVDVAHAFY 128 Query: 116 AEDSHKFVNGVLDKAAPVIR 135 + VNGVLD A +R Sbjct: 129 SGPEPGLVNGVLDHLAQTLR 148 >UniRef50_B3ERI6 Putative uncharacterized protein n=1 Tax=Candidatus Amoebophilus asiaticus 5a2 RepID=B3ERI6_AMOA5 Length = 378 Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 51/89 (57%), Gaps = 1/89 (1%) Query: 47 YFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAIN 105 ++ +L+A ++D L++ ++ +E +++ ++++ L E+ +P KVAIN Sbjct: 290 FYDKLIATALEQEKFIDNLIQQHIKNWSIERTVLLDRIIIKMGLCEMKYFDSIPTKVAIN 349 Query: 106 EAIELAKSFGAEDSHKFVNGVLDKAAPVI 134 E ++LAK + S KF+NGVLD A I Sbjct: 350 EYVDLAKKYSTAKSSKFINGVLDTIAKTI 378 >UniRef50_C1SH03 Transcription antitermination factor NusB n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SH03_9BACT Length = 147 Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 8/138 (5%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYF-RELLAGVATNTAYLD 63 AR R R+ A +Y ++ ++ F +D V+ F L G A + D Sbjct: 7 ARTRGRKFAYMMMYQLIIADYTPKEITKTFWNSVKEEDESVIEFANRLFTGAAESVDAND 66 Query: 64 GLMKPYLSR--LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 ++ Y+ E +G+VEK +LR+A++EL R + PY IN+ + LA+ + E S Sbjct: 67 EIICRYIRSDWTYERMGEVEKDILRVAVHELF-RQEAPYYAVINDFVTLARKYSDEKSAS 125 Query: 122 FVNGVLDKAAPVIRPNKK 139 VNG+L+ IR N K Sbjct: 126 LVNGILEN----IRKNFK 139 >UniRef50_C6XHS5 Transcription antitermination protein NusB n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XHS5_LIBAP Length = 170 Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 46/145 (31%), Positives = 72/145 (49%), Gaps = 14/145 (9%) Query: 1 MKPAARRR-ARECAVQALYSWQLSQNDIADV-----EYQFLA--EQDVKDV----DVLYF 48 +K + RR AR AVQALY + ++ Y+F A E DV+ V D+ +F Sbjct: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 Query: 49 RELLAGVATNTAYLDGLMKPYLSR--LLEELGQVEKAVLRIALYELSKRSDVPYKVAINE 106 R ++ GV ++D L+ L+ L + ++LR + EL + VP +V I+E Sbjct: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 Query: 107 AIELAKSFGAEDSHKFVNGVLDKAA 131 + +A F D KF+N VLDK + Sbjct: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154 >UniRef50_Q1J0I4 N utilization substance protein B homolog n=3 Tax=Deinococcus RepID=NUSB_DEIGD Length = 169 Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 69/135 (51%), Gaps = 14/135 (10%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVD----------VLYFRELLA 53 RR ARE A + L+ + + + V + AE D+++ D + + R+L+ Sbjct: 13 GTRRAAREFAFRVLFEAERGKLPLETVFTR--AEGDMREGDDTFAQLNAEALAFARQLVD 70 Query: 54 GVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAK 112 G+ A +D ++ + E++ Q + VLR+A YE+ + P+ I A+ +A+ Sbjct: 71 GLGERRADVDAALRRTIRGWDFEQMAQTDLNVLRLATYEMLYTPE-PHPPVIESAVRIAR 129 Query: 113 SFGAEDSHKFVNGVL 127 FG EDS +FVNGVL Sbjct: 130 KFGGEDSGRFVNGVL 144 >UniRef50_C0EFY5 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EFY5_9CLOT Length = 132 Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 1/78 (1%) Query: 51 LLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIE 109 L GV + + LD L+ +L++ + L +V A+LR+A+YE+ V +AINEA+E Sbjct: 46 LFTGVQQHISELDRLISEHLTKWNITRLSKVILAILRLAVYEIVYVERVEAPIAINEAVE 105 Query: 110 LAKSFGAEDSHKFVNGVL 127 LAK + ++ FVNGVL Sbjct: 106 LAKEYATQEDAAFVNGVL 123 >UniRef50_C0VVW4 Transcription antitermination protein NusB n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VVW4_9CORY Length = 342 Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 33/86 (38%), Positives = 50/86 (58%), Gaps = 4/86 (4%) Query: 47 YFRELLAGVATNTAYLDGLMKPYLSRL---LEELGQVEKAVLRIALYEL-SKRSDVPYKV 102 Y RE++ GVA N +D ++ L+ + L V++AVLR+A +EL S+VP K Sbjct: 58 YTREIIEGVAVNLDLIDFAIERELADTDWTFDRLPGVDRAVLRVATWELLFNASNVPQKT 117 Query: 103 AINEAIELAKSFGAEDSHKFVNGVLD 128 A+ +A+EL +DS +VN VLD Sbjct: 118 AVTQAVELVSQLSTDDSPAYVNAVLD 143 >UniRef50_C4GAK6 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GAK6_9FIRM Length = 152 Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 75/155 (48%), Gaps = 31/155 (20%) Query: 2 KPAARRRARECAVQALY------------SWQLSQNDIADVEYQFLAEQD----VKDVDV 45 K RR+ RE A + L+ L D ++E L E++ V +D Sbjct: 4 KTMIRRQIRETAFRILFVLNFCPADQMQDQLNLYFTDHTELEIDDLTEEEDQKAVIRLDQ 63 Query: 46 LYFRELLAGVATNTAYLDGLMKPYLSRLLEE---------LGQVEKAVLRIALYELSKRS 96 + E+ A +L P + R++EE L +V+ +LR+A+YE+ K Sbjct: 64 ASWPEITAKCLGAAGHL-----PEIDRIIEESSEGWKLSRLTKVDLTLLRLAVYEM-KFE 117 Query: 97 DVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAA 131 ++P +AINEA+ELAK +G + S FVNGVL K + Sbjct: 118 NLPSGIAINEAVELAKRYGTDKSPAFVNGVLAKIS 152 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_A7ZIG9 N utilization substance protein B homolog n=118 ... 202 2e-51 UniRef50_A4VHT5 N utilization substance protein B homolog n=23 T... 185 5e-46 UniRef50_Q48DC2 N utilization substance protein B homolog n=51 T... 179 2e-44 UniRef50_Q1IFL9 N utilization substance protein B homolog n=12 T... 177 9e-44 UniRef50_C5BS84 N utilization substance protein B homolog n=2 Ta... 174 9e-43 UniRef50_Q493G9 N utilization substance protein B homolog n=3 Ta... 171 7e-42 UniRef50_A7C6S2 Transcription antitermination protein NusB n=1 T... 169 3e-41 UniRef50_Q21F20 N utilization substance protein B homolog n=5 Ta... 168 5e-41 UniRef50_B8D9P0 N utilization substance protein B homolog n=5 Ta... 167 9e-41 UniRef50_A1W9I4 N utilization substance protein B homolog n=6 Ta... 166 2e-40 UniRef50_Q0AD60 N utilization substance protein B homolog n=3 Ta... 164 7e-40 UniRef50_B0UU23 N utilization substance protein B homolog n=33 T... 164 1e-39 UniRef50_Q31FT2 N utilization substance protein B homolog n=1 Ta... 163 1e-39 UniRef50_Q3JCY0 N utilization substance protein B homolog n=2 Ta... 162 4e-39 UniRef50_C7HWX1 NusB antitermination factor n=1 Tax=Thiomonas in... 161 5e-39 UniRef50_A9BVN7 N utilization substance protein B homolog n=7 Ta... 161 6e-39 UniRef50_A5F5Z6 N utilization substance protein B homolog n=91 T... 161 6e-39 UniRef50_C0GMV1 NusB antitermination factor n=1 Tax=Desulfonatro... 161 7e-39 UniRef50_Q2YD50 N utilization substance protein B homolog n=4 Ta... 160 8e-39 UniRef50_B6IZ82 N utilization substance protein B homolog n=6 Ta... 160 2e-38 UniRef50_C9R7W0 NusB antitermination factor n=1 Tax=Ammonifex de... 160 2e-38 UniRef50_Q1N2N9 Transcription antitermination protein NusB n=1 T... 160 2e-38 UniRef50_Q479L3 N utilization substance protein B homolog n=3 Ta... 159 3e-38 UniRef50_A8PLC7 Transcription antitermination factor NusB n=1 Ta... 158 5e-38 UniRef50_Q2BM00 NusB protein n=1 Tax=Neptuniibacter caesariensis... 158 5e-38 UniRef50_A0L3Z8 NusB antitermination factor n=1 Tax=Magnetococcu... 158 6e-38 UniRef50_A6W2L6 N utilization substance protein B homolog n=4 Ta... 157 7e-38 UniRef50_Q0K7T8 N utilization substance protein B homolog n=70 T... 157 8e-38 UniRef50_Q1D350 N utilization substance protein B homolog n=2 Ta... 157 1e-37 UniRef50_D0L1W4 NusB antitermination factor n=1 Tax=Halothiobaci... 157 1e-37 UniRef50_A3DDP0 N utilization substance protein B homolog n=5 Ta... 156 2e-37 UniRef50_Q5X720 N utilization substance protein B homolog n=6 Ta... 156 2e-37 UniRef50_B5ELV9 NusB antitermination factor n=3 Tax=Acidithiobac... 155 3e-37 UniRef50_B3U4H5 Transcription antitermination protein n=1 Tax=Ca... 155 4e-37 UniRef50_C0N8C8 Transcription antitermination factor NusB n=1 Ta... 155 5e-37 UniRef50_A8FF16 N utilization substance protein B homolog n=28 T... 154 6e-37 UniRef50_C6WU13 NusB antitermination factor n=1 Tax=Methylotener... 154 7e-37 UniRef50_C4KD91 NusB antitermination factor n=1 Tax=Thauera sp. ... 154 7e-37 UniRef50_A8ZTU6 N utilization substance protein B homolog n=1 Ta... 152 2e-36 UniRef50_Q1PUX1 Putative uncharacterized protein n=1 Tax=Candida... 152 2e-36 UniRef50_Q1H424 N utilization substance protein B homolog n=2 Ta... 152 2e-36 UniRef50_B8FQ61 N utilization substance protein B homolog n=2 Ta... 152 3e-36 UniRef50_C6X9V7 NusB antitermination factor n=1 Tax=Methylovorus... 152 4e-36 UniRef50_C5TIT6 Transcription antitermination factor NusB n=5 Ta... 151 5e-36 UniRef50_B8FJ78 N utilization substance protein B homolog n=2 Ta... 151 5e-36 UniRef50_A5D319 N utilization substance protein B homolog n=3 Ta... 151 6e-36 UniRef50_Q30YL1 N utilization substance protein B homolog n=5 Ta... 151 6e-36 UniRef50_UPI00006A2BCA UPI00006A2BCA related cluster n=1 Tax=Xen... 151 7e-36 UniRef50_B0TEI6 N utilization substance protein B homolog n=1 Ta... 151 8e-36 UniRef50_A6Q4Q9 N utilization substance protein B homolog n=20 T... 151 8e-36 UniRef50_Q3BXH9 N utilization substance protein B homolog n=20 T... 150 1e-35 UniRef50_C7LSH4 NusB antitermination factor n=1 Tax=Desulfomicro... 150 1e-35 UniRef50_Q67NA9 N utilization substance protein B homolog n=2 Ta... 150 2e-35 UniRef50_B5JUN2 Transcription antitermination factor NusB n=1 Ta... 149 2e-35 UniRef50_B3QV72 N utilization substance protein B homolog n=1 Ta... 149 3e-35 UniRef50_A5FQ51 N utilization substance protein B homolog n=5 Ta... 149 4e-35 UniRef50_Q3A4L2 N utilization substance protein B homolog n=2 Ta... 148 4e-35 UniRef50_C1DB31 N utilization substance protein B homolog n=3 Ta... 148 4e-35 UniRef50_Q2RIA9 N utilization substance protein B homolog n=1 Ta... 148 5e-35 UniRef50_C0GE32 NusB antitermination factor n=1 Tax=Dethiobacter... 148 5e-35 UniRef50_B3DWQ3 N utilization substance protein B homolog n=1 Ta... 148 5e-35 UniRef50_Q1ISD3 N utilization substance protein B homolog n=2 Ta... 148 6e-35 UniRef50_A0LI21 N utilization substance protein B homolog n=4 Ta... 147 8e-35 UniRef50_B1H071 Transcription antitermination factor NusB n=1 Ta... 147 1e-34 UniRef50_Q2LQK4 N utilization substance protein B homolog n=1 Ta... 147 1e-34 UniRef50_A9ET18 N utilization substance protein B homolog n=1 Ta... 147 1e-34 UniRef50_A0Q099 N utilization substance protein B homolog n=3 Ta... 147 1e-34 UniRef50_A7HDY2 N utilization substance protein B homolog n=4 Ta... 147 2e-34 UniRef50_B9L0C6 Transcription antitermination factor NusB n=2 Ta... 146 2e-34 UniRef50_D1CCN3 NusB antitermination factor n=1 Tax=Thermobaculu... 146 2e-34 UniRef50_A5G3J8 N utilization substance protein B homolog n=7 Ta... 146 2e-34 UniRef50_C8W0Z5 NusB antitermination factor n=1 Tax=Desulfotomac... 145 3e-34 UniRef50_C8WLN1 NusB antitermination factor n=2 Tax=Coriobacteri... 145 3e-34 UniRef50_D2LH50 NusB antitermination factor n=1 Tax=Rhodomicrobi... 145 3e-34 UniRef50_UPI0001C42A93 transcription antitermination protein Nus... 145 3e-34 UniRef50_B2S4Q2 N utilization substance protein B homolog n=3 Ta... 145 4e-34 UniRef50_Q5P3H4 N utilization substance protein B homolog n=9 Ta... 144 6e-34 UniRef50_B6WQ80 Putative uncharacterized protein n=1 Tax=Desulfo... 144 7e-34 UniRef50_B4D6X5 NusB antitermination factor n=1 Tax=Chthoniobact... 144 8e-34 UniRef50_Q5F9Y0 N utilization substance protein B homolog n=22 T... 144 8e-34 UniRef50_Q5WF59 N utilization substance protein B homolog n=2 Ta... 144 1e-33 UniRef50_Q1NRI6 NusB antitermination factor n=1 Tax=delta proteo... 144 1e-33 UniRef50_B7IXH3 N utilization substance protein B homolog n=82 T... 143 1e-33 UniRef50_B4SCZ7 N utilization substance protein B homolog n=2 Ta... 143 2e-33 UniRef50_D2L8L5 NusB antitermination factor n=1 Tax=Desulfovibri... 143 2e-33 UniRef50_UPI0001745093 NusB antitermination factor n=1 Tax=Verru... 143 2e-33 UniRef50_Q6MNX9 N utilization substance protein B homolog n=1 Ta... 142 3e-33 UniRef50_B1LAQ8 N utilization substance protein B homolog n=10 T... 142 3e-33 UniRef50_Q6AP93 N utilization substance protein B homolog n=1 Ta... 142 3e-33 UniRef50_B0S1M1 N utilization substance protein B homolog n=2 Ta... 142 3e-33 UniRef50_C0ZC03 N utilization substance protein B n=1 Tax=Brevib... 142 4e-33 UniRef50_C6CU26 NusB antitermination factor n=3 Tax=Bacillales R... 142 4e-33 UniRef50_A1WVG0 N utilization substance protein B homolog n=1 Ta... 142 5e-33 UniRef50_D1VSJ6 Transcription antitermination factor NusB n=1 Ta... 141 5e-33 UniRef50_Q0AZF7 N utilization substance protein B homolog n=1 Ta... 141 6e-33 UniRef50_C5CI90 NusB antitermination factor n=1 Tax=Kosmotoga ol... 141 7e-33 UniRef50_A6CAX2 Transcription antitermination protein NusB n=1 T... 141 8e-33 UniRef50_C6BYC6 NusB antitermination factor n=1 Tax=Desulfovibri... 140 9e-33 UniRef50_C7N4M1 Transcription antitermination factor NusB n=1 Ta... 140 9e-33 UniRef50_C4L3F7 N utilization substance protein B homolog n=2 Ta... 140 1e-32 UniRef50_D1U9R7 NusB antitermination factor n=1 Tax=Desulfovibri... 140 1e-32 UniRef50_Q2YYB7 N utilization substance protein B homolog n=59 T... 140 1e-32 UniRef50_C8PMR7 Transcription antitermination factor NusB n=1 Ta... 140 2e-32 UniRef50_UPI0000E87F00 transcription antitermination protein Nus... 139 2e-32 UniRef50_Q1MS16 N utilization substance protein B homolog n=1 Ta... 139 2e-32 UniRef50_B8DJF1 N utilization substance protein B homolog n=2 Ta... 139 2e-32 UniRef50_C5S6Y6 NusB antitermination factor n=1 Tax=Allochromati... 139 2e-32 UniRef50_B9L730 Transcription antitermination factor NusB n=2 Ta... 139 2e-32 UniRef50_Q3ATI5 N utilization substance protein B homolog n=9 Ta... 139 2e-32 UniRef50_Q0TPD3 N utilization substance protein B homolog n=10 T... 139 3e-32 UniRef50_Q03RR0 N utilization substance protein B homolog n=23 T... 139 3e-32 UniRef50_B0K9D9 N utilization substance protein B homolog n=10 T... 139 3e-32 UniRef50_A8VXB3 Acetyl-CoA carboxylase, biotin carboxyl carrier ... 139 3e-32 UniRef50_UPI00019779AE transcription antitermination protein Nus... 139 4e-32 UniRef50_B9XNZ3 NusB antitermination factor n=1 Tax=bacterium El... 139 4e-32 UniRef50_A4TBX3 N utilization substance protein B homolog n=18 T... 139 4e-32 UniRef50_B2KE32 N utilization substance protein B homolog n=1 Ta... 137 7e-32 UniRef50_B7DR17 NusB antitermination factor n=1 Tax=Alicyclobaci... 137 2e-31 UniRef50_B8ZUK7 N utilization substance protein B homolog n=16 T... 136 2e-31 UniRef50_B0REX0 N utilization substance protein B homolog n=4 Ta... 136 2e-31 UniRef50_Q3AAM1 N utilization substance protein B homolog n=1 Ta... 136 2e-31 UniRef50_D2RJI2 NusB antitermination factor n=2 Tax=Acidaminococ... 135 3e-31 UniRef50_B2A534 N utilization substance protein B homolog n=1 Ta... 135 3e-31 UniRef50_A5EVR1 Transcription antitermination factor NusB n=2 Ta... 135 4e-31 UniRef50_D0LW51 NusB antitermination factor n=1 Tax=Haliangium o... 135 4e-31 UniRef50_C8WXH1 NusB antitermination factor n=1 Tax=Alicyclobaci... 135 4e-31 UniRef50_UPI00016C04B6 transcription termination factor n=1 Tax=... 135 4e-31 UniRef50_B1W456 N utilization substance protein B homolog n=7 Ta... 135 4e-31 UniRef50_A6LU43 N utilization substance protein B homolog n=6 Ta... 135 5e-31 UniRef50_D0MK26 NusB antitermination factor n=1 Tax=Rhodothermus... 135 5e-31 UniRef50_C4XHY8 N utilization substance protein B homolog n=1 Ta... 135 5e-31 UniRef50_Q7USA9 N utilization substance protein B homolog n=2 Ta... 135 5e-31 UniRef50_A0JX79 N utilization substance protein B homolog n=3 Ta... 135 5e-31 UniRef50_B3DQ30 N utilization substance protein B homolog n=7 Ta... 135 6e-31 UniRef50_C9RN69 NusB antitermination factor n=1 Tax=Fibrobacter ... 134 9e-31 UniRef50_C1QBG1 Transcription antitermination factor NusB n=1 Ta... 134 1e-30 UniRef50_Q0F2C5 Transcription antitermination protein NusB n=1 T... 134 1e-30 UniRef50_C8PUW0 NusB antitermination factor n=1 Tax=Enhydrobacte... 133 1e-30 UniRef50_B8DTW1 N utilization substance protein B homolog n=16 T... 133 2e-30 UniRef50_Q0ABQ3 N utilization substance protein B homolog n=2 Ta... 133 2e-30 UniRef50_D1KDZ6 Transcription termination factor n=1 Tax=uncultu... 133 2e-30 UniRef50_Q136T4 N utilization substance protein B homolog n=36 T... 132 2e-30 UniRef50_C1I679 NusB antitermination factor n=1 Tax=Clostridium ... 132 3e-30 UniRef50_B8H535 N utilization substance protein B homolog n=4 Ta... 132 3e-30 UniRef50_A8SLT0 Putative uncharacterized protein n=1 Tax=Parvimo... 132 3e-30 UniRef50_C9LUP3 Transcription antitermination factor NusB n=2 Ta... 132 3e-30 UniRef50_Q983A9 N utilization substance protein B homolog n=3 Ta... 132 3e-30 UniRef50_C0R001 Transcription antitermination protein NusB n=1 T... 132 3e-30 UniRef50_B1ZVQ6 NusB antitermination factor n=3 Tax=Verrucomicro... 132 4e-30 UniRef50_C9KK33 Transcription antitermination factor NusB n=1 Ta... 132 4e-30 UniRef50_C4FTS3 Putative uncharacterized protein n=1 Tax=Catonel... 132 4e-30 UniRef50_D2EIA0 Transcription antitermination factor NusB n=1 Ta... 132 5e-30 UniRef50_A4W3P3 Transcription termination factor n=6 Tax=Strepto... 131 6e-30 UniRef50_A4XLC1 N utilization substance protein B homolog n=2 Ta... 131 7e-30 UniRef50_A8MFJ3 N utilization substance protein B homolog n=2 Ta... 131 8e-30 UniRef50_C3XMJ2 Transcription termination protein n=1 Tax=Helico... 131 8e-30 UniRef50_B0CL95 N utilization substance protein B homolog n=42 T... 131 9e-30 UniRef50_C2D814 Putative uncharacterized protein n=1 Tax=Atopobi... 131 9e-30 UniRef50_A0LUG6 N utilization substance protein B homolog n=2 Ta... 130 9e-30 UniRef50_C4V2M6 Transcription antitermination protein NusB n=1 T... 130 9e-30 UniRef50_A6DTV7 NusB antitermination factor n=1 Tax=Lentisphaera... 130 9e-30 UniRef50_D2B6P7 Transcription antitermination factor NusB n=3 Ta... 130 9e-30 UniRef50_B0SB76 N utilization substance protein B homolog n=6 Ta... 130 1e-29 UniRef50_C4ZCZ0 N utilization substance protein B homolog n=5 Ta... 130 1e-29 UniRef50_D1N6Z8 NusB antitermination factor n=1 Tax=Victivallis ... 130 1e-29 UniRef50_Q8DSE9 N utilization substance protein B homolog n=5 Ta... 130 1e-29 UniRef50_B5YHQ2 N utilization substance protein B homolog n=1 Ta... 130 1e-29 UniRef50_B6GCG9 Putative uncharacterized protein n=2 Tax=Collins... 130 2e-29 UniRef50_B9LDT2 N utilization substance protein B homolog n=6 Ta... 130 2e-29 UniRef50_B3QJK9 N utilization substance protein B homolog n=9 Ta... 129 2e-29 UniRef50_Q47QY5 N utilization substance protein B homolog n=21 T... 129 2e-29 UniRef50_A7HX88 NusB antitermination factor n=1 Tax=Parvibaculum... 129 3e-29 UniRef50_B9E6Q9 N utilization substance protein B homolog n=6 Ta... 129 3e-29 UniRef50_D0WFZ4 Transcription antitermination factor NusB n=1 Ta... 129 3e-29 UniRef50_Q1AW09 N utilization substance protein B homolog n=1 Ta... 129 3e-29 UniRef50_C8W9W3 NusB antitermination factor n=1 Tax=Atopobium pa... 129 4e-29 UniRef50_Q03FZ6 N utilization substance protein B homolog n=1 Ta... 129 4e-29 UniRef50_D2R650 NusB antitermination factor n=2 Tax=Planctomycet... 129 4e-29 UniRef50_Q2W4S5 N utilization substance protein B homolog n=3 Ta... 128 5e-29 UniRef50_D1B3U2 Transcription antitermination factor NusB n=3 Ta... 128 5e-29 UniRef50_Q836W8 N utilization substance protein B homolog n=39 T... 128 5e-29 UniRef50_Q5FNA1 N utilization substance protein B homolog n=1 Ta... 128 6e-29 UniRef50_C8WEQ4 NusB antitermination factor n=4 Tax=Zymomonas mo... 128 7e-29 UniRef50_UPI00016C434C transcription antitermination protein Nus... 128 7e-29 UniRef50_A5CWS4 N utilization substance protein B n=2 Tax=sulfur... 128 7e-29 UniRef50_B0MQ18 Putative uncharacterized protein n=1 Tax=Eubacte... 128 7e-29 UniRef50_B5YE05 N utilization substance protein B homolog n=2 Ta... 127 8e-29 UniRef50_Q057F3 N utilization substance protein B homolog n=1 Ta... 127 9e-29 UniRef50_A7VX44 Putative uncharacterized protein n=1 Tax=Clostri... 127 1e-28 UniRef50_A5D1B7 tRNA and rRNA cytosine-C5-methylases n=6 Tax=Clo... 127 1e-28 UniRef50_Q1JF82 N utilization substance protein B homolog n=57 T... 127 1e-28 UniRef50_A7NB00 Transcription antitermination factor n=19 Tax=Fr... 127 1e-28 UniRef50_C7H0C2 Transcription antitermination factor NusB n=1 Ta... 126 2e-28 UniRef50_Q4JVG6 N utilization substance protein B homolog n=5 Ta... 126 2e-28 UniRef50_A5WHT3 NusB antitermination factor n=1 Tax=Psychrobacte... 126 2e-28 UniRef50_Q0APG4 N utilization substance protein B homolog n=3 Ta... 126 2e-28 UniRef50_Q2S6K8 N utilization substance protein B homolog n=1 Ta... 126 2e-28 UniRef50_Q38XV0 N utilization substance protein B homolog n=9 Ta... 125 3e-28 UniRef50_C5SLV1 NusB antitermination factor n=2 Tax=Caulobactera... 125 4e-28 UniRef50_A5ZPE1 Putative uncharacterized protein n=4 Tax=Clostri... 125 5e-28 UniRef50_A3EVA3 Transcription antitermination factor (NusB) n=2 ... 125 5e-28 UniRef50_A3DCX8 Sun protein n=5 Tax=Clostridium RepID=A3DCX8_CLOTH 125 6e-28 UniRef50_B9CP02 Transcription antitermination factor NusB n=1 Ta... 124 7e-28 UniRef50_Q6NH08 N utilization substance protein B homolog n=1 Ta... 124 9e-28 UniRef50_C6XHS5 Transcription antitermination protein NusB n=1 T... 123 1e-27 UniRef50_Q607V0 N utilization substance protein B homolog n=1 Ta... 123 1e-27 UniRef50_C6QHP1 NusB antitermination factor n=1 Tax=Hyphomicrobi... 123 2e-27 UniRef50_A9KMC2 N utilization substance protein B homolog n=17 T... 123 2e-27 UniRef50_Q5HW85 N utilization substance protein B homolog n=24 T... 123 2e-27 UniRef50_B8D2G0 N utilization substance protein B homolog n=1 Ta... 123 2e-27 UniRef50_C5C681 N utilization substance protein B homolog n=14 T... 123 2e-27 UniRef50_Q6A8H8 N utilization substance protein B homolog n=2 Ta... 122 3e-27 UniRef50_C1XPK4 NusB antitermination factor n=2 Tax=Meiothermus ... 122 3e-27 UniRef50_B0NZC1 Putative uncharacterized protein n=2 Tax=Clostri... 122 3e-27 UniRef50_Q0BTF1 N utilization substance protein B homolog n=11 T... 122 4e-27 UniRef50_B0PBD5 Putative uncharacterized protein n=1 Tax=Anaerot... 122 4e-27 UniRef50_Q1J0I4 N utilization substance protein B homolog n=3 Ta... 122 4e-27 UniRef50_C4DFR3 Transcription antitermination factor NusB n=1 Ta... 122 5e-27 UniRef50_B1C650 Putative uncharacterized protein n=1 Tax=Anaerof... 122 5e-27 UniRef50_B0VJ63 N utilization substance protein B n=1 Tax=Candid... 122 5e-27 UniRef50_C3XHP1 Predicted protein n=1 Tax=Helicobacter bilis ATC... 122 5e-27 UniRef50_C1TMF2 Transcription antitermination factor NusB n=1 Ta... 121 7e-27 UniRef50_C2BWJ7 Possible transcription antitermination protein N... 121 8e-27 UniRef50_B6BUY9 Transcription antitermination factor NusB n=1 Ta... 120 1e-26 UniRef50_Q2J830 N utilization substance protein B homolog n=3 Ta... 120 1e-26 UniRef50_B3EF03 Sun protein n=11 Tax=Chlorobiaceae RepID=B3EF03_... 120 1e-26 UniRef50_Q4FPZ1 N utilization substance protein B homolog n=19 T... 120 1e-26 UniRef50_B9E100 N utilization substance protein B homolog n=14 T... 120 1e-26 UniRef50_B3QZ49 Sun protein n=1 Tax=Chloroherpeton thalassium AT... 120 1e-26 UniRef50_C5RKK7 NusB antitermination factor n=1 Tax=Clostridium ... 120 1e-26 UniRef50_A3UCC3 Transcription antitermination protein NusB n=1 T... 120 1e-26 UniRef50_O66530 N utilization substance protein B homolog n=3 Ta... 120 2e-26 UniRef50_D1BMC4 Sun protein n=3 Tax=Veillonella RepID=D1BMC4_VEIPT 120 2e-26 UniRef50_Q18B61 N utilization substance protein B homolog n=6 Ta... 119 3e-26 UniRef50_C5VC90 Transcription antitermination factor NusB n=2 Ta... 119 3e-26 UniRef50_A7VUU4 Putative uncharacterized protein n=1 Tax=Clostri... 119 3e-26 UniRef50_Q72JL6 N utilization substance protein B homolog n=3 Ta... 119 3e-26 UniRef50_C9LLB0 Transcription antitermination factor NusB n=1 Ta... 119 3e-26 UniRef50_C8PI00 Transcription antitermination factor NusB n=1 Ta... 119 3e-26 UniRef50_Q01T72 N utilization substance protein B homolog n=1 Ta... 119 3e-26 UniRef50_B6IMS4 Transcription antitermination protein NusB, puta... 119 3e-26 UniRef50_D0LCQ6 Transcription antitermination factor NusB n=3 Ta... 118 4e-26 UniRef50_A8MH88 Sun protein n=7 Tax=Clostridiaceae RepID=A8MH88_... 118 4e-26 UniRef50_UPI0001699525 transcription antitermination protein Nus... 118 5e-26 UniRef50_Q0SP57 N utilization substance protein B homolog n=43 T... 118 6e-26 UniRef50_A8FD39 rRNA SAM-dependent methyltransferase RmsB n=3 Ta... 118 6e-26 UniRef50_C4GAK6 Putative uncharacterized protein n=1 Tax=Shuttle... 118 7e-26 UniRef50_B1N082 Transcription termination factor n=3 Tax=Leucono... 118 7e-26 UniRef50_UPI0000D5356A transcription termination factor (NusB) n... 117 9e-26 UniRef50_C5R7W5 Transcription antitermination protein NusB n=1 T... 117 1e-25 Sequences not found previously or not previously below threshold: >UniRef50_A7ZIG9 N utilization substance protein B homolog n=118 Tax=Gammaproteobacteria RepID=NUSB_ECO24 Length = 139 Score = 202 bits (516), Expect = 2e-51, Method: Composition-based stats. Identities = 139/139 (100%), Positives = 139/139 (100%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA Sbjct: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH Sbjct: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 Query: 121 KFVNGVLDKAAPVIRPNKK 139 KFVNGVLDKAAPVIRPNKK Sbjct: 121 KFVNGVLDKAAPVIRPNKK 139 >UniRef50_A4VHT5 N utilization substance protein B homolog n=23 Tax=Gammaproteobacteria RepID=NUSB_PSEU5 Length = 161 Score = 185 bits (470), Expect = 5e-46, Method: Composition-based stats. Identities = 71/137 (51%), Positives = 89/137 (64%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 K A RR AR A+QALY W ++ + ++E QF + D VD YF ELL GVA Sbjct: 19 KIATRRVARSLAMQALYQWHMAGQSLNEIEAQFRVDNDFSGVDGAYFHELLNGVARKKTE 78 Query: 62 LDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 +D + P L R L+EL VE A+LR++ YEL +R DVPY+V INE IELAK +GA D HK Sbjct: 79 VDQAIAPNLDRPLDELDPVELAILRLSTYELMQRIDVPYRVVINEGIELAKVYGATDGHK 138 Query: 122 FVNGVLDKAAPVIRPNK 138 FVNGVLDK AP +R + Sbjct: 139 FVNGVLDKLAPSLRSAE 155 >UniRef50_Q48DC2 N utilization substance protein B homolog n=51 Tax=Gammaproteobacteria RepID=NUSB_PSE14 Length = 165 Score = 179 bits (455), Expect = 2e-44, Method: Composition-based stats. Identities = 73/137 (53%), Positives = 93/137 (67%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 K A RR AR+ A QALY W ++ + + ++E QF + D +VD YFRELL GVATN Sbjct: 23 KSAKRREARQMATQALYQWHMAGHALNEIEAQFRVDNDFSNVDGAYFRELLHGVATNKTE 82 Query: 62 LDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 +D + P L +EEL VE AVLR++ +EL KR DVPY+V INE IELAK +G+ D HK Sbjct: 83 IDTALSPCLDLTIEELDPVELAVLRLSTFELLKRIDVPYRVVINEGIELAKVYGSTDGHK 142 Query: 122 FVNGVLDKAAPVIRPNK 138 FVNGVLDK AP +R + Sbjct: 143 FVNGVLDKLAPRLREVE 159 >UniRef50_Q1IFL9 N utilization substance protein B homolog n=12 Tax=Proteobacteria RepID=NUSB_PSEE4 Length = 166 Score = 177 bits (450), Expect = 9e-44, Method: Composition-based stats. Identities = 71/137 (51%), Positives = 91/137 (66%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 K A RR AR+ A QALY W ++++ + +VE QF + D DVD YFRE+L GV Sbjct: 24 KSAKRREARKLATQALYQWHMAKHSLNEVEAQFRVDNDFSDVDGAYFREILHGVPAKKVE 83 Query: 62 LDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 +D +KP L LEEL VE +VLR++ +E R+DVPY+V INE +ELAK FGA D HK Sbjct: 84 IDEALKPCLDTPLEELDPVELSVLRLSAWEFMMRADVPYRVVINEGVELAKVFGATDGHK 143 Query: 122 FVNGVLDKAAPVIRPNK 138 FVNGVLDK AP +R + Sbjct: 144 FVNGVLDKLAPRLREAE 160 >UniRef50_C5BS84 N utilization substance protein B homolog n=2 Tax=Gammaproteobacteria RepID=NUSB_TERTT Length = 147 Score = 174 bits (442), Expect = 9e-43, Method: Composition-based stats. Identities = 72/138 (52%), Positives = 89/138 (64%), Gaps = 3/138 (2%) Query: 1 MKP--AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATN 58 MK A R RAR A+QA+Y WQ++ N + +E +F + D+ VD YF EL GVA + Sbjct: 1 MKVTAATRSRARHFAMQAIYQWQMNGNPLHVIEAEFHTDNDMSKVDTEYFHELFHGVAAD 60 Query: 59 TAYLDGLMKPYLSR-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 + LD P+L LE+L V A+LR A +EL R DVPYKV INEA+ LAK FGAE Sbjct: 61 KSALDACFLPHLKSLPLEKLDPVTLALLRQATFELKNRVDVPYKVVINEAVNLAKKFGAE 120 Query: 118 DSHKFVNGVLDKAAPVIR 135 DSHKFVNGVLDK A +R Sbjct: 121 DSHKFVNGVLDKVAADLR 138 >UniRef50_Q493G9 N utilization substance protein B homolog n=3 Tax=Enterobacteriaceae RepID=NUSB_BLOPB Length = 144 Score = 171 bits (434), Expect = 7e-42, Method: Composition-based stats. Identities = 81/134 (60%), Positives = 104/134 (77%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK +RRRAREC +QALYSWQ+S+ND+ ++E + EQD++D ++ YF EL GV + Sbjct: 1 MKAISRRRARECTLQALYSWQVSKNDVKEIERYVVTEQDIQDCNISYFHELYIGVISCAE 60 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD LM P+LSR LE+LG +E +VLRIAL+EL+K +D+PYKVAINEAIEL K FGAE SH Sbjct: 61 ELDKLMIPHLSRNLEKLGYIEHSVLRIALFELTKCNDIPYKVAINEAIELVKIFGAEKSH 120 Query: 121 KFVNGVLDKAAPVI 134 KF+NGVLDK A + Sbjct: 121 KFINGVLDKIANQL 134 >UniRef50_A7C6S2 Transcription antitermination protein NusB n=1 Tax=Beggiatoa sp. PS RepID=A7C6S2_9GAMM Length = 164 Score = 169 bits (428), Expect = 3e-41, Method: Composition-based stats. Identities = 68/149 (45%), Positives = 91/149 (61%), Gaps = 12/149 (8%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFL------------AEQDVKDVDVLYFRE 50 P AR ARE +QALY WQL+ + +E QFL E D++ D+ YF++ Sbjct: 10 PKARHVARERVLQALYQWQLTGQNTQLIESQFLDESTLSKEEDESEEPDMQKADIPYFKQ 69 Query: 51 LLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIEL 110 LL + T+ LD L P+L R + +L VE A+LRI YEL+ D+P+KV INEA+EL Sbjct: 70 LLHSIPEKTSDLDKLFAPFLDRKITQLDPVELAILRIGSYELTHCQDIPFKVVINEAVEL 129 Query: 111 AKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 AK FGAE SHK++NGVLDK A + + K Sbjct: 130 AKQFGAEQSHKYINGVLDKLAHSQQKSTK 158 >UniRef50_Q21F20 N utilization substance protein B homolog n=5 Tax=Gammaproteobacteria RepID=NUSB_SACD2 Length = 150 Score = 168 bits (426), Expect = 5e-41, Method: Composition-based stats. Identities = 75/141 (53%), Positives = 94/141 (66%), Gaps = 3/141 (2%) Query: 1 MKP--AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATN 58 MK AAR RAR A+QALY W++S N + +E +F + D+ VDV YF E+L GVA Sbjct: 1 MKVSAAARGRARHFAMQALYQWEMSGNALHVIEAEFHTDNDMSKVDVEYFHEILHGVAAI 60 Query: 59 TAYLDGLMKPYLSR-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 + LD KP+L+ L+E+ V AVLR A YE KR DVPYKV INEA+ LAK FGA Sbjct: 61 KSTLDETFKPFLTGLRLDEIDPVSLAVLRQACYEFEKRVDVPYKVVINEAVNLAKKFGAA 120 Query: 118 DSHKFVNGVLDKAAPVIRPNK 138 DSHKF+NGVLDK A +R ++ Sbjct: 121 DSHKFINGVLDKVALRVRKDE 141 >UniRef50_B8D9P0 N utilization substance protein B homolog n=5 Tax=Buchnera aphidicola RepID=NUSB_BUCA5 Length = 143 Score = 167 bits (424), Expect = 9e-41, Method: Composition-based stats. Identities = 80/139 (57%), Positives = 108/139 (77%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MKP+ RR+AR CA+Q LYSW++S N+I + FL E++ K++D++YF EL+ G+ + Sbjct: 1 MKPSFRRKARACALQVLYSWEISHNNIKESAIYFLKEKNKKNIDIVYFYELIIGITYDCK 60 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D LMKPYL R L+ELG +E+A+LRI+ YEL KR+D+PYKV+INE IELAK FG+EDSH Sbjct: 61 NIDNLMKPYLFRSLKELGHIERAILRISFYELHKRNDIPYKVSINEGIELAKLFGSEDSH 120 Query: 121 KFVNGVLDKAAPVIRPNKK 139 KF+NGVLDKA + NKK Sbjct: 121 KFINGVLDKAVFKMGYNKK 139 >UniRef50_A1W9I4 N utilization substance protein B homolog n=6 Tax=Comamonadaceae RepID=NUSB_ACISJ Length = 177 Score = 166 bits (421), Expect = 2e-40, Method: Composition-based stats. Identities = 55/136 (40%), Positives = 75/136 (55%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 + R RARE A+QALY + ND ++ D ++ LL G T Y+ Sbjct: 32 KSGRSRAREFALQALYQHLVGGNDATAIDVFTRDLSGFHKADAAHYDALLHGCITTAQYM 91 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 D L+ P L R + E+ +E AV+ I +YE DVP++V INE IELAK FG D HK+ Sbjct: 92 DELIAPQLDRKMSEISPIEHAVMWIGVYEFQHCQDVPWRVVINECIELAKEFGGTDGHKY 151 Query: 123 VNGVLDKAAPVIRPNK 138 VNGVL+ AP +R + Sbjct: 152 VNGVLNGLAPQLRATE 167 >UniRef50_Q0AD60 N utilization substance protein B homolog n=3 Tax=Nitrosomonas RepID=NUSB_NITEC Length = 167 Score = 164 bits (416), Expect = 7e-40, Method: Composition-based stats. Identities = 54/133 (40%), Positives = 78/133 (58%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 RR +RE A+Q +Y W+L+ + +++ Q D YF +LL GV ++ L Sbjct: 20 KNRRRLSRELALQGIYQWRLAGGNAQEIDLQLQQVNFYSKADGSYFSDLLQGVLEHSRDL 79 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + ++ YL R L EL VE ++L I YE+ ++P + INEAIELAKS+G D HK+ Sbjct: 80 EAQIQAYLDRQLAELSPVECSILLIGTYEMVHHPEIPCRAIINEAIELAKSYGGTDGHKY 139 Query: 123 VNGVLDKAAPVIR 135 VNGVLDK A +R Sbjct: 140 VNGVLDKLAAQLR 152 >UniRef50_B0UU23 N utilization substance protein B homolog n=33 Tax=Gammaproteobacteria RepID=NUSB_HAES2 Length = 144 Score = 164 bits (415), Expect = 1e-39, Method: Composition-based stats. Identities = 73/135 (54%), Positives = 94/135 (69%), Gaps = 2/135 (1%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQD--VKDVDVLYFRELLAGVATNT 59 K + RRRARECAVQ LYSW +S+N ++E F+ +QD +K VD+ YFR+L + Sbjct: 7 KISPRRRARECAVQNLYSWAISKNSPEEIELNFIVDQDNEMKGVDMPYFRKLFHQTINHV 66 Query: 60 AYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D M PYL R EL +E A+LR+A+YEL DVPYKV INEAIE+AK FGAE+S Sbjct: 67 ETIDSTMAPYLDRDNVELDPIECAILRLAVYELKFELDVPYKVVINEAIEVAKVFGAEES 126 Query: 120 HKFVNGVLDKAAPVI 134 HK++NGVLDK AP + Sbjct: 127 HKYINGVLDKIAPAL 141 >UniRef50_Q31FT2 N utilization substance protein B homolog n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=NUSB_THICR Length = 161 Score = 163 bits (414), Expect = 1e-39, Method: Composition-based stats. Identities = 60/136 (44%), Positives = 92/136 (67%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 + R + R A+QALY WQ++ ++ D+ QF E + D DV F+E++ VA + A LD Sbjct: 22 SVRTQTRRVALQALYQWQVNHSETVDIIKQFSEEGRLVDTDVALFQEIVNEVANHAADLD 81 Query: 64 GLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 L P+L R + + VEK ++R+ ++EL + ++PY+V INE++ELAK FGAEDSHK++ Sbjct: 82 ELYAPFLDRAVARIDPVEKNIMRMGVFELQNKLEIPYRVVINESVELAKRFGAEDSHKYI 141 Query: 124 NGVLDKAAPVIRPNKK 139 NG+LDKAA +R +K Sbjct: 142 NGILDKAAEGLRSLEK 157 >UniRef50_Q3JCY0 N utilization substance protein B homolog n=2 Tax=Nitrosococcus oceani RepID=NUSB_NITOC Length = 148 Score = 162 bits (411), Expect = 4e-39, Method: Composition-based stats. Identities = 61/133 (45%), Positives = 87/133 (65%), Gaps = 1/133 (0%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R +AR A+Q LY WQL D+ ++ +F+ QD++ +D YF+ELL GV LD Sbjct: 5 RSKARTAALQGLYQWQLMGQDVDKIDIEFIV-QDIRGIDHAYFQELLRGVPQRQGELDEC 63 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 + P+L R + E+ VE A+LRI +EL R ++PY+V +NEAIELAK FGAE H++VNG Sbjct: 64 LGPFLDRPINEVDPVECAILRIGAFELLCRPEIPYRVVLNEAIELAKRFGAEHGHRYVNG 123 Query: 126 VLDKAAPVIRPNK 138 +LDK A +R + Sbjct: 124 ILDKVAQKVRATE 136 >UniRef50_C7HWX1 NusB antitermination factor n=1 Tax=Thiomonas intermedia K12 RepID=C7HWX1_THIIN Length = 202 Score = 161 bits (409), Expect = 5e-39, Method: Composition-based stats. Identities = 53/136 (38%), Positives = 79/136 (58%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 +ARR++RE A Q +Y W L+ +D +E +D +F+ LL G L Sbjct: 8 KSARRKSRELAFQGIYEWLLAGSDTGAIEAFLHERYPTIKLDDDHFQSLLHGALAEAGPL 67 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 D L++P++ R EL VE A+L + +EL + DVPY+V INEA+EL K +G D +K+ Sbjct: 68 DALIQPHIDRQTSELSPVEHALLLMGAFELQRHLDVPYRVVINEAVELGKVYGGTDGYKY 127 Query: 123 VNGVLDKAAPVIRPNK 138 VNGVLD+ A +R + Sbjct: 128 VNGVLDRIAAQLRKTE 143 >UniRef50_A9BVN7 N utilization substance protein B homolog n=7 Tax=Comamonadaceae RepID=NUSB_DELAS Length = 212 Score = 161 bits (409), Expect = 6e-39, Method: Composition-based stats. Identities = 51/136 (37%), Positives = 74/136 (54%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 + R RARE A+QALY + ND+ ++ D +++ LL G + L Sbjct: 32 KSNRSRAREFALQALYQHLVGGNDVEAIDRFTRDLSGFHKADSVHYDALLRGCINSQVDL 91 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 D L+ P L R + E+ +E A + I +YE DVP++V +NE IELAK FG D HK+ Sbjct: 92 DALIAPKLDRTMAEISPIEHASMWIGVYEFQHCPDVPWRVVLNECIELAKEFGGTDGHKY 151 Query: 123 VNGVLDKAAPVIRPNK 138 VN VL+ AP +R + Sbjct: 152 VNAVLNGLAPTLRAAE 167 >UniRef50_A5F5Z6 N utilization substance protein B homolog n=91 Tax=Gammaproteobacteria RepID=NUSB_VIBC3 Length = 156 Score = 161 bits (409), Expect = 6e-39, Method: Composition-based stats. Identities = 79/150 (52%), Positives = 106/150 (70%), Gaps = 14/150 (9%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDV--------------DVL 46 +KPAARR AR+ A+QA+YSWQ+++ ++A +E QFL + DV Sbjct: 5 VKPAARRNARQFALQAIYSWQITKENVATIEEQFLTSGKYDEEEHRAAEPALAAPETDVS 64 Query: 47 YFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINE 106 YFR+LLAGV N LD ++P++SR +++L +E A+LR+A+YE+++R DVPYKV INE Sbjct: 65 YFRDLLAGVVLNHNELDSKLRPFVSRPMQDLDMMELALLRLAMYEMTRREDVPYKVVINE 124 Query: 107 AIELAKSFGAEDSHKFVNGVLDKAAPVIRP 136 AIELAK F AEDSHKFVNGVLDKAAP +R Sbjct: 125 AIELAKVFAAEDSHKFVNGVLDKAAPHVRK 154 >UniRef50_C0GMV1 NusB antitermination factor n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GMV1_9DELT Length = 157 Score = 161 bits (408), Expect = 7e-39, Method: Composition-based stats. Identities = 52/140 (37%), Positives = 75/140 (53%), Gaps = 4/140 (2%) Query: 3 PAARRRARECAVQALYSW--QLSQNDIADVEYQFLAEQDVK-DVDVLYFRELLAGVATNT 59 +R RE A Q LYS + I D + F +QD D+ Y +L+ GV N Sbjct: 11 THSRHAQREFAFQVLYSLHFDQTGTHILDTFHHFKNDQDTAVQQDMSYALQLINGVRENL 70 Query: 60 AYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 LD + + ++ + VE ++R+A+YE+ R D+P KV INEAIELAK+FG + Sbjct: 71 EELDAAIGRHSQNWKVKRIAMVELTIMRLAVYEMIYREDIPVKVGINEAIELAKTFGDNN 130 Query: 119 SHKFVNGVLDKAAPVIRPNK 138 S FVNG+LD A +R + Sbjct: 131 SRNFVNGILDAVARDMRHGE 150 >UniRef50_Q2YD50 N utilization substance protein B homolog n=4 Tax=Betaproteobacteria RepID=NUSB_NITMU Length = 158 Score = 160 bits (407), Expect = 8e-39, Method: Composition-based stats. Identities = 53/137 (38%), Positives = 77/137 (56%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 + + RR ARE A+Q LY W ++ +E Q ++ D YF LL GV Sbjct: 17 RKSRRRLARELALQGLYQWCVAGGSAGTIEAQLRDTEEFPKTDEEYFSRLLHGVLMQAPE 76 Query: 62 LDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 L+ ++P L R EL VE ++L + YEL + ++PY+ INEA+ELAK++G HK Sbjct: 77 LEKEIQPCLDRPFNELSPVEISILLLGAYELERHPEIPYRAVINEAVELAKAYGGTHGHK 136 Query: 122 FVNGVLDKAAPVIRPNK 138 +VNGVLDK A +R + Sbjct: 137 YVNGVLDKLAVKLRAAE 153 >UniRef50_B6IZ82 N utilization substance protein B homolog n=6 Tax=Coxiella burnetii RepID=NUSB_COXB2 Length = 138 Score = 160 bits (405), Expect = 2e-38, Method: Composition-based stats. Identities = 60/137 (43%), Positives = 82/137 (59%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 M R AR A+QALY W + + QF+ E D+ D DV YF+E++ G + A Sbjct: 1 MINKTRHNARRYALQALYQWFFCETKPDALISQFMEEHDLSDTDVAYFKEVVTGTIQHVA 60 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D LM +L R + L VE +VLR+++YEL R +VPYKV I+EA+EL K FGAE H Sbjct: 61 IIDELMTAHLDRKISALNPVELSVLRLSIYELLHRKEVPYKVVIDEALELVKEFGAEAGH 120 Query: 121 KFVNGVLDKAAPVIRPN 137 K+VN +LD + IR Sbjct: 121 KYVNAILDVLSSEIRKG 137 >UniRef50_C9R7W0 NusB antitermination factor n=1 Tax=Ammonifex degensii KC4 RepID=C9R7W0_AMMDK Length = 155 Score = 160 bits (405), Expect = 2e-38, Method: Composition-based stats. Identities = 48/131 (36%), Positives = 75/131 (57%), Gaps = 1/131 (0%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 +RRRARE A+ L+ + + + LAE + + + L+ G +D Sbjct: 2 SRRRAREAALMVLFQVDVGGAVPEEALERTLAEWRLGNASREFATSLVLGTLAYRPQIDR 61 Query: 65 LMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 +++ R LE + +V++ V+R+ALYEL R D+P VAINEA+ELAK +G E+S +FV Sbjct: 62 VIEELSQRWRLERMNRVDRNVMRLALYELLFRQDIPPAVAINEAVELAKRYGGEESPRFV 121 Query: 124 NGVLDKAAPVI 134 NG+L K A + Sbjct: 122 NGILGKVAENL 132 >UniRef50_Q1N2N9 Transcription antitermination protein NusB n=1 Tax=Bermanella marisrubri RepID=Q1N2N9_9GAMM Length = 128 Score = 160 bits (405), Expect = 2e-38, Method: Composition-based stats. Identities = 59/122 (48%), Positives = 84/122 (68%) Query: 14 VQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL 73 +QALY W L+ ++++E +FL + D+ VD YFR++L GV LD + P LSR Sbjct: 1 MQALYQWDLAGASLSNIEAEFLTDNDMSKVDTEYFRDILRGVPRELDDLDEKLAPCLSRN 60 Query: 74 LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPV 133 ++E+ VE+A+LR+ YEL R DVPY+V INE++EL+K FGA +SHKF+NG LDK A Sbjct: 61 MQEVTPVERAILRLGAYELLHRIDVPYRVVINESVELSKKFGANESHKFINGALDKLAQA 120 Query: 134 IR 135 +R Sbjct: 121 VR 122 >UniRef50_Q479L3 N utilization substance protein B homolog n=3 Tax=Betaproteobacteria RepID=NUSB_DECAR Length = 163 Score = 159 bits (402), Expect = 3e-38, Method: Composition-based stats. Identities = 53/136 (38%), Positives = 77/136 (56%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 +ARRRARE +Q LY W++ D A +E + D +F L GV + L Sbjct: 19 KSARRRAREFVLQGLYQWRVGGADEASIEAYAPEMEGFAKADREFFVGTLRGVISQQEKL 78 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + ++ R EL VE +L + +E+ ++ PY+V INEAIEL K+FG D HK+ Sbjct: 79 IEQVSTHIDRPFNELSPVEACILMLGSFEMLNHAETPYRVIINEAIELTKAFGGTDGHKY 138 Query: 123 VNGVLDKAAPVIRPNK 138 VNGVLDK A ++RP++ Sbjct: 139 VNGVLDKVAAILRPDE 154 >UniRef50_A8PLC7 Transcription antitermination factor NusB n=1 Tax=Rickettsiella grylli RepID=A8PLC7_9COXI Length = 148 Score = 158 bits (401), Expect = 5e-38, Method: Composition-based stats. Identities = 60/131 (45%), Positives = 90/131 (68%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 A++RAR AVQA+Y WQL+Q + ++ +FLA++++K VD YF ++ G+ + LD Sbjct: 12 AKQRARRFAVQAIYQWQLTQETFSVIQTKFLAQEEMKSVDTAYFTLIVQGILNDHELLDR 71 Query: 65 LMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 ++ ++ R L +L VE A+LR+ YEL S++PYKV +NEAIELAK FGA DS+K+VN Sbjct: 72 YLQSFVDRPLCQLDCVEWAILRLGTYELLNCSEIPYKVILNEAIELAKMFGATDSYKYVN 131 Query: 125 GVLDKAAPVIR 135 G+L + A R Sbjct: 132 GILHRIAEKNR 142 >UniRef50_Q2BM00 NusB protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BM00_9GAMM Length = 159 Score = 158 bits (401), Expect = 5e-38, Method: Composition-based stats. Identities = 69/133 (51%), Positives = 91/133 (68%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 RR AR A+QALYSW L+ + ++E QF + D++D D+ F ELL +A + L Sbjct: 17 TTQRRNARSYALQALYSWTLAGQPLNELEAQFRVDNDMRDTDIRLFSELLHSIAGGKSEL 76 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 D L +L R ++EL +E VLRI YELSKR +VPY+VAINE++ELAK+FGA DSHK+ Sbjct: 77 DQLYTDFLDRNVDELDPIELNVLRIGAYELSKRFEVPYRVAINESVELAKTFGATDSHKY 136 Query: 123 VNGVLDKAAPVIR 135 VNGVLDK A +R Sbjct: 137 VNGVLDKLAQRVR 149 >UniRef50_A0L3Z8 NusB antitermination factor n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L3Z8_MAGSM Length = 165 Score = 158 bits (400), Expect = 6e-38, Method: Composition-based stats. Identities = 47/139 (33%), Positives = 79/139 (56%), Gaps = 1/139 (0%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 M+ R ++RE A+Q LY +++ + + L + + +D YF +L GV Sbjct: 15 MRRGGRSKSREIALQVLYGCEIAHDPVGPALRNMLEDPHSEGMDQDYFSQLTLGVEAERE 74 Query: 61 YLDGLMKPY-LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 LD + + ++ V+ +LR+ +YEL K+ +VP++V +NEAIEL+K FG E+S Sbjct: 75 VLDSWIGRAGAAWSMDRFSVVDHNILRLGIYELLKQPEVPHRVILNEAIELSKRFGGEES 134 Query: 120 HKFVNGVLDKAAPVIRPNK 138 +FVNGV+DK A ++R Sbjct: 135 SRFVNGVMDKVANLVREED 153 >UniRef50_A6W2L6 N utilization substance protein B homolog n=4 Tax=Gammaproteobacteria RepID=NUSB_MARMS Length = 174 Score = 157 bits (399), Expect = 7e-38, Method: Composition-based stats. Identities = 67/135 (49%), Positives = 94/135 (69%), Gaps = 2/135 (1%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQD--VKDVDVLYFRELLAGVATNTAYLD 63 R +R A+QA+Y WQ+++ ++++E QF+ +QD + D +YFRELL GV + LD Sbjct: 27 RSASRRLALQAVYQWQMNKTAVSEIETQFVIDQDRDMDSCDKVYFRELLQGVTASAKKLD 86 Query: 64 GLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 L + L R L EL +E AV+RI YELS+R DVPY+VAINE++ELAK FGA +SHK+V Sbjct: 87 TLFEELLDRPLSELDPIELAVMRIGSYELSQRLDVPYRVAINESVELAKGFGATESHKYV 146 Query: 124 NGVLDKAAPVIRPNK 138 NG+LDK A +R + Sbjct: 147 NGILDKLAQRVRREE 161 >UniRef50_Q0K7T8 N utilization substance protein B homolog n=70 Tax=Betaproteobacteria RepID=NUSB_RALEH Length = 172 Score = 157 bits (399), Expect = 8e-38, Method: Composition-based stats. Identities = 60/136 (44%), Positives = 81/136 (59%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 +ARRR+RE A+Q LY W L++NDI ++ Q D +F LL G A L Sbjct: 32 KSARRRSRELALQGLYQWLLNRNDIGAIQAHLHDAQGFNKADREHFDALLNGAVREEARL 91 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 +P+L R +EEL VE+A L + YEL D+PYKV INEA+EL K+FG + +K+ Sbjct: 92 TAAFEPFLDRKVEELSPVERAALLVGSYELVHCLDIPYKVVINEAVELTKTFGGVEGYKY 151 Query: 123 VNGVLDKAAPVIRPNK 138 VNGVLDK A +R + Sbjct: 152 VNGVLDKLAAQVRAAE 167 >UniRef50_Q1D350 N utilization substance protein B homolog n=2 Tax=Cystobacterineae RepID=NUSB_MYXXD Length = 140 Score = 157 bits (398), Expect = 1e-37, Method: Composition-based stats. Identities = 51/138 (36%), Positives = 83/138 (60%), Gaps = 5/138 (3%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFL---AEQDVKDVD-VLYFRELLAGVATNT 59 ARR RE A+QALY +++ A+ E + +D D V + REL+ GV ++ Sbjct: 2 GARRTGRERALQALYQLEMATATTAEALESAWSAAEESNKRDPDAVKFARELVEGVQSHR 61 Query: 60 AYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 +D L++ + L+ + ++++ VLR+ ++EL R D+P KV+INEA+EL K+FG E+ Sbjct: 62 DEIDQLIERHSHNWRLDRMSRIDRNVLRLGIFELKYRPDIPRKVSINEAVELGKNFGNEE 121 Query: 119 SHKFVNGVLDKAAPVIRP 136 S FVNG+LD+ A + Sbjct: 122 SSAFVNGLLDRVAVALNK 139 >UniRef50_D0L1W4 NusB antitermination factor n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L1W4_HALNC Length = 196 Score = 157 bits (397), Expect = 1e-37, Method: Composition-based stats. Identities = 59/140 (42%), Positives = 89/140 (63%), Gaps = 3/140 (2%) Query: 2 KPAARRR---ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATN 58 KP+ ++R ARE AVQALY L+ + ++ QF+ + + VD+ FR ++ GV+ N Sbjct: 54 KPSPKKRWRWARERAVQALYQQILNHTPVDLLDAQFMEDAFMLKVDLELFRRIVRGVSAN 113 Query: 59 TAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 LD P L R L E+ +E+A+LR+ +EL ++P VAINEA+E+AK +GA + Sbjct: 114 EESLDEAYSPLLDRPLAEIDPIEQAILRLGAFELIHTPEIPRAVAINEAVEMAKLYGATE 173 Query: 119 SHKFVNGVLDKAAPVIRPNK 138 SHK++NGVLDK A +R N+ Sbjct: 174 SHKYINGVLDKLADRVRLNE 193 >UniRef50_A3DDP0 N utilization substance protein B homolog n=5 Tax=Clostridium RepID=NUSB_CLOTH Length = 145 Score = 156 bits (396), Expect = 2e-37, Method: Composition-based stats. Identities = 43/129 (33%), Positives = 77/129 (59%), Gaps = 1/129 (0%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 RR +RE A++ +Y ++ ++ + L + D+ + D Y +++ GV N +DG Sbjct: 2 GRRASREIAMKLIYQLEIQKDSREEQINNTLEQYDLNENDREYILDVVKGVFKNQEEIDG 61 Query: 65 LMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 ++ + L + +V+ A+LR+A+YE+ R D+P+ VAINEA+ELAK++ E+S F+ Sbjct: 62 TIEKFSKGWKLSRISKVDLAILRLAIYEMCHRDDIPFTVAINEAVELAKNYSGEESGSFI 121 Query: 124 NGVLDKAAP 132 NG+L K Sbjct: 122 NGILGKVVK 130 >UniRef50_Q5X720 N utilization substance protein B homolog n=6 Tax=Legionella RepID=NUSB_LEGPA Length = 147 Score = 156 bits (395), Expect = 2e-37, Method: Composition-based stats. Identities = 52/134 (38%), Positives = 83/134 (61%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 +RRAR+ A+QALY W +S D+ ++E QF ++ VD YF LL G+ T+ L+ Sbjct: 8 GKRRARKFALQALYQWLMSGTDLHEIEAQFRTINNMDKVDGEYFCRLLYGIPTHVEALEA 67 Query: 65 LMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + PYL R + L +E VLRI +EL ++PYKV ++E++ L K FG+++ +++VN Sbjct: 68 SLLPYLDREINALNPIELTVLRIGSFELFHCPEIPYKVILDESVSLTKEFGSQEGYRYVN 127 Query: 125 GVLDKAAPVIRPNK 138 GVL+ A +R + Sbjct: 128 GVLNNLAKQVRSVE 141 >UniRef50_B5ELV9 NusB antitermination factor n=3 Tax=Acidithiobacillus RepID=B5ELV9_ACIF5 Length = 147 Score = 155 bits (394), Expect = 3e-37, Method: Composition-based stats. Identities = 60/141 (42%), Positives = 85/141 (60%), Gaps = 3/141 (2%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNT 59 MK + RR AR+ AVQALY WQ++ A++E QF ++ + ++ DV +F+ L GV Sbjct: 1 MKISRRRLARQAAVQALYQWQMNPGHCAEIELQFTSDPERLQGADVAFFKSLWQGVCAAI 60 Query: 60 AYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 + LD + + R +E+ +VE+A+LR+A EL PY+V INEAIEL K FG E Sbjct: 61 SELDPAIAEEVQDRRWADEVSEVERAILRLAACELRDYPQTPYRVIINEAIELDKDFGGE 120 Query: 118 DSHKFVNGVLDKAAPVIRPNK 138 H+FVN VLDK A R + Sbjct: 121 QGHRFVNAVLDKLAQRWRSAE 141 >UniRef50_B3U4H5 Transcription antitermination protein n=1 Tax=Candidatus Nitrospira defluvii RepID=B3U4H5_9BACT Length = 157 Score = 155 bits (393), Expect = 4e-37, Method: Composition-based stats. Identities = 49/138 (35%), Positives = 76/138 (55%), Gaps = 3/138 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 A+R +ARE AVQ L+ + + F + + + ++ L+AGV N LD Sbjct: 2 ASRHQARERAVQILFQYDIHGQ-AGPWLDDFWIQYPLAEELRVFAERLVAGVRANKKELD 60 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 L+ Y + + + +++ +LR+ +EL +VP KV +NEAIELAKSFG E++ KF Sbjct: 61 ALIGTYATNWKVSRMPIIDRNILRMGCFELLHVPEVPAKVTLNEAIELAKSFGDEEASKF 120 Query: 123 VNGVLDK-AAPVIRPNKK 139 VNG+LDK R +K Sbjct: 121 VNGILDKLLGSDARLERK 138 >UniRef50_C0N8C8 Transcription antitermination factor NusB n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N8C8_9GAMM Length = 150 Score = 155 bits (392), Expect = 5e-37, Method: Composition-based stats. Identities = 50/133 (37%), Positives = 75/133 (56%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R +AR AVQALY ++ +F+ + +D YF L+ G +D Sbjct: 7 RTKARRAAVQALYQALVNNETPQKAGLEFVTAEYADKIDRKYFTTLIEGTIKYQQAIDAE 66 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 + + R L + VE +VLR+A++E ++PY+V +NEA+ELAKSFG E HK+VNG Sbjct: 67 LSEAVDRDLNAVDPVEISVLRLAVFEFMHLPEIPYRVVLNEAVELAKSFGGEQGHKYVNG 126 Query: 126 VLDKAAPVIRPNK 138 VLDK +RP++ Sbjct: 127 VLDKMGARLRPHE 139 >UniRef50_A8FF16 N utilization substance protein B homolog n=28 Tax=Bacillales RepID=NUSB_BACP2 Length = 131 Score = 154 bits (391), Expect = 6e-37, Method: Composition-based stats. Identities = 48/131 (36%), Positives = 75/131 (57%), Gaps = 5/131 (3%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 RR ARE A+Q L+ +S D + L EQ+ +F EL+ GV LD + Sbjct: 3 RRTAREKALQTLFQIDVSNIDPKEAITHALDEQESD----PFFEELVFGVLEQKDKLDDM 58 Query: 66 MKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + +L L+ + V++A+LR+++YE+ + D+P V++NEAIELAK FG + + KFVN Sbjct: 59 ISQHLVNWKLDRIANVDRAILRLSVYEMVYQEDIPVSVSMNEAIELAKLFGDDKAPKFVN 118 Query: 125 GVLDKAAPVIR 135 GVL ++ Sbjct: 119 GVLSNIKNDLK 129 >UniRef50_C6WU13 NusB antitermination factor n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WU13_METML Length = 178 Score = 154 bits (391), Expect = 7e-37, Method: Composition-based stats. Identities = 55/133 (41%), Positives = 79/133 (59%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 RR++RE ++A+Y L+ ++++ V + D D YF+ LL V N +DG Sbjct: 40 RRKSRELVLKAVYRGMLNDSELSQVFRDMRDDPDYNKADEAYFKHLLQAVTENLTAIDGK 99 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 + ++ R LEEL VE A+LRIA EL +PY+V INE +ELAK FG D HK++NG Sbjct: 100 IVGFIDRTLEELSPVEHAILRIAGCELMFDLSIPYRVVINEGVELAKVFGGTDGHKYING 159 Query: 126 VLDKAAPVIRPNK 138 VLDK A +R + Sbjct: 160 VLDKFAADVRAAE 172 >UniRef50_C4KD91 NusB antitermination factor n=1 Tax=Thauera sp. MZ1T RepID=C4KD91_THASP Length = 166 Score = 154 bits (390), Expect = 7e-37, Method: Composition-based stats. Identities = 61/137 (44%), Positives = 81/137 (59%), Gaps = 1/137 (0%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAE-QDVKDVDVLYFRELLAGVATNTAY 61 ARRRARE A+Q +Y W LS N+ V+ +E +++ +D F LL G Sbjct: 21 KMARRRARELALQGVYQWLLSGNNATTVQRHLESETENLDKIDRELFVSLLRGATGAADE 80 Query: 62 LDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 L G +P LSR + EL +E A+L + +EL D PY+V INEAIELAK +G D HK Sbjct: 81 LRGCFEPLLSRPVAELSPIEHAILLLGTHELRHNLDTPYRVVINEAIELAKGYGGTDGHK 140 Query: 122 FVNGVLDKAAPVIRPNK 138 FVNGVLDK + +RP + Sbjct: 141 FVNGVLDKLSTRLRPEE 157 >UniRef50_A8ZTU6 N utilization substance protein B homolog n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=NUSB_DESOH Length = 154 Score = 152 bits (386), Expect = 2e-36, Method: Composition-based stats. Identities = 47/135 (34%), Positives = 76/135 (56%), Gaps = 4/135 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVE---YQFLAEQDVKDVDVLYFRELLAGVATNTA 60 A+RRR+RE A+Q L+S+ L+ D + F A ++ + + +F L GV Sbjct: 2 ASRRRSRELALQFLFSYDLNAAGAGDFDAWMEDFCARFNLSEKNFPHFFTLAQGVKNRWE 61 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 L+ L+ L + V++ V+RIA++E+ DVP +VAINEAIE+ K +G ++S Sbjct: 62 KLNDLLAESSEHWKLSRMSGVDRNVMRIAIFEMLYCDDVPPRVAINEAIEIGKKYGTDES 121 Query: 120 HKFVNGVLDKAAPVI 134 F+NGVLD+ + Sbjct: 122 GAFINGVLDRINKEL 136 >UniRef50_Q1PUX1 Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PUX1_9BACT Length = 422 Score = 152 bits (386), Expect = 2e-36, Method: Composition-based stats. Identities = 47/135 (34%), Positives = 71/135 (52%), Gaps = 1/135 (0%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R ARE A++ALY L + +F + K + L+ G ++ +D Sbjct: 4 RTIARELAIKALYQLDLLGDKAETEIDEFCRQNAEKPDIYKFALLLVTGCRSHVKEIDER 63 Query: 66 MKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + L + ++K +LR+ +YEL R D+P KV+INEAIELAK FG +DS FVN Sbjct: 64 ISLSAENWDLHRMAVIDKNILRLGVYELLYRDDIPPKVSINEAIELAKKFGDKDSGMFVN 123 Query: 125 GVLDKAAPVIRPNKK 139 G+LDK ++ K+ Sbjct: 124 GILDKVYNWLKNGKQ 138 >UniRef50_Q1H424 N utilization substance protein B homolog n=2 Tax=Betaproteobacteria RepID=NUSB_METFK Length = 154 Score = 152 bits (386), Expect = 2e-36, Method: Composition-based stats. Identities = 56/134 (41%), Positives = 81/134 (60%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 +RR++RE ++ +Y ++Q D + + + + D D YFR+LL GVA + LD Sbjct: 15 SRRKSRELVLKGIYLGLMNQKDTSVIIRELADDPDFDRADYEYFRQLLEGVAESIDELDA 74 Query: 65 LMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + L R + EL +E A+L IA YEL +PY+VAINE +ELAK +G D HK+VN Sbjct: 75 RLAGLLDRQVSELSPIEHAILCIAAYELIHDVTIPYRVAINEGVELAKLYGGTDGHKYVN 134 Query: 125 GVLDKAAPVIRPNK 138 GVLDK A RP++ Sbjct: 135 GVLDKIAAEARPDE 148 >UniRef50_B8FQ61 N utilization substance protein B homolog n=2 Tax=Desulfitobacterium hafniense RepID=NUSB_DESHD Length = 148 Score = 152 bits (385), Expect = 3e-36, Method: Composition-based stats. Identities = 46/139 (33%), Positives = 81/139 (58%), Gaps = 4/139 (2%) Query: 5 ARRRARECAVQALYSWQLSQN--DIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 +RR ARE A+Q L+ +++ D+ +++ E V + + + EL G T+ + Sbjct: 2 SRRLARETALQVLFQLEMTGESQDLKSAIHKWADEFAVPEGSIPFAEELAEGTLTHKEVI 61 Query: 63 DGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D ++ L + V++ +LR+A YE+ R D+P +V INEAIE+AK +G+E+S K Sbjct: 62 DENLEKLSEGWSLARMANVDRNLLRLASYEILFRKDIPGRVTINEAIEIAKRYGSEESGK 121 Query: 122 FVNGVLDKAAPVI-RPNKK 139 F+NG+LDK + + ++K Sbjct: 122 FINGILDKVVESVNKKDEK 140 >UniRef50_C6X9V7 NusB antitermination factor n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6X9V7_METSD Length = 158 Score = 152 bits (384), Expect = 4e-36, Method: Composition-based stats. Identities = 51/133 (38%), Positives = 77/133 (57%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 RR++RE A++ +Y ++Q D + + E + D Y R+LL GV LD Sbjct: 20 RRKSRELALKGIYRNLMNQADFRAILRELADEPEFDKADQEYLRKLLDGVLAEREELDRR 79 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 + ++ R ++EL +E +L ++ YEL +PY+VAINE +ELAK +G D HK+VNG Sbjct: 80 IAVFVDRPMQELSPIEHGILCLSAYELIFDLSIPYRVAINEGVELAKIYGGTDGHKYVNG 139 Query: 126 VLDKAAPVIRPNK 138 VLDK A RP + Sbjct: 140 VLDKLAAEARPGE 152 >UniRef50_C5TIT6 Transcription antitermination factor NusB n=5 Tax=Neisseriaceae RepID=C5TIT6_NEIFL Length = 142 Score = 151 bits (383), Expect = 5e-36, Method: Composition-based stats. Identities = 55/138 (39%), Positives = 80/138 (57%), Gaps = 1/138 (0%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK + RRRARE AVQA+Y +++ ++ ++D F +L G T+ Sbjct: 1 MK-SPRRRARELAVQAIYQAGINKTAAPEIAKNIHELSQTSNMDEELFNKLFFGTQTHAE 59 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 + P L R ++L +E+AVL +A +ELS + PY V INEAIE+ K+FG D H Sbjct: 60 EYMEKISPLLDRDEKDLSPIERAVLLVACHELSTMPETPYPVIINEAIEVTKTFGGTDGH 119 Query: 121 KFVNGVLDKAAPVIRPNK 138 KFVNG+LD+ A IRP++ Sbjct: 120 KFVNGILDQLASRIRPDE 137 >UniRef50_B8FJ78 N utilization substance protein B homolog n=2 Tax=Desulfobacteraceae RepID=NUSB_DESAA Length = 143 Score = 151 bits (383), Expect = 5e-36, Method: Composition-based stats. Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 1/137 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 RRRARE A+Q+L+ + + F +F EL GV N +D Sbjct: 2 GKRRRARELALQSLFYVDSTSAPPLEALDLFCQNFPPPKDLAQFFYELAKGVINNQDEID 61 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 L++ + + L + V+ ++RIA YE DVP +V+INEAI++ K FG +S F Sbjct: 62 RLIEQHSNNWKLYRMSAVDLNLMRIAAYEFLFCPDVPRRVSINEAIDIGKRFGTAESGAF 121 Query: 123 VNGVLDKAAPVIRPNKK 139 +NG+LD + +K Sbjct: 122 INGILDSIHLHLGKEEK 138 >UniRef50_A5D319 N utilization substance protein B homolog n=3 Tax=Peptococcaceae RepID=NUSB_PELTS Length = 144 Score = 151 bits (383), Expect = 6e-36, Method: Composition-based stats. Identities = 38/129 (29%), Positives = 68/129 (52%), Gaps = 1/129 (0%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 +RR+ARE A+Q L+ + D + + R L+ G N A +D Sbjct: 2 SRRQARERALQILFQVDVGGADPGEAFRLMDEGFGELKKYQEFARLLVGGTLENLAAIDR 61 Query: 65 LMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 ++ + + V++ ++R+ALYE+ D+PY V++NEA+EL K++G E+S +F+ Sbjct: 62 VIAGVSKDWNINRMANVDRNIIRMALYEIFFCEDIPYSVSVNEAVELGKTYGGEESGRFI 121 Query: 124 NGVLDKAAP 132 NG+L + Sbjct: 122 NGILGRIVE 130 >UniRef50_Q30YL1 N utilization substance protein B homolog n=5 Tax=Desulfovibrionales RepID=NUSB_DESDG Length = 154 Score = 151 bits (383), Expect = 6e-36, Method: Composition-based stats. Identities = 53/140 (37%), Positives = 79/140 (56%), Gaps = 7/140 (5%) Query: 2 KPAARRRARECAVQALYSWQLSQ-NDIADVEYQFLAEQDVKDVDVL-----YFRELLAGV 55 ++RR +R A Q LY S D+A ++ + A DV D + EL+ G Sbjct: 6 NNSSRRSSRALAFQVLYGLNFSPAKDLAQLQEAYCASPDVSDRGGEAHPVGFAWELIEGT 65 Query: 56 ATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 TN LD ++ + +E +G++E +LR+A+YE+ R+DVP KVAINE IEL+K F Sbjct: 66 WTNQKALDEIITRFAQNWRVERIGKIELTILRLAVYEMLYRADVPPKVAINEGIELSKQF 125 Query: 115 GAEDSHKFVNGVLDKAAPVI 134 G + S F+NG+LD AA + Sbjct: 126 GDDKSRNFINGILDAAAKAL 145 >UniRef50_UPI00006A2BCA UPI00006A2BCA related cluster n=1 Tax=Xenopus (Silurana) tropicalis RepID=UPI00006A2BCA Length = 151 Score = 151 bits (382), Expect = 7e-36, Method: Composition-based stats. Identities = 52/136 (38%), Positives = 71/136 (52%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 +AR RARE A+QALY + +N+ + ++ D ++ LL G L Sbjct: 11 KSARSRAREFALQALYQHLVGRNEASAIDLFTRDLAGFHKADAAHYDALLHGCVRTEDAL 70 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 D L+ P L R L +E AV+ I YE DVP++V +NE IELAK FG D HK+ Sbjct: 71 DALIVPQLDRPLAAFSPIEHAVMWIGAYEFQHCMDVPWRVTLNECIELAKEFGGTDGHKY 130 Query: 123 VNGVLDKAAPVIRPNK 138 VN VL AP +R + Sbjct: 131 VNAVLGGLAPRLRAAE 146 >UniRef50_B0TEI6 N utilization substance protein B homolog n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=NUSB_HELMI Length = 206 Score = 151 bits (382), Expect = 8e-36, Method: Composition-based stats. Identities = 46/135 (34%), Positives = 75/135 (55%), Gaps = 1/135 (0%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 +RR+ RE A+Q L+ + + + A E + + + REL+ G N +DG Sbjct: 2 SRRQGRETALQTLFMADVGRMEPAYALQYASEEFGISEAAAAFARELVEGAVANRETIDG 61 Query: 65 LMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 ++ LE + V++ +LR+A++E+ R D+P AINEAIELAK + E+S KFV Sbjct: 62 NIRRLAKEWNLERMPHVDRNLLRVAIFEMLFREDIPLNAAINEAIELAKIYANEESAKFV 121 Query: 124 NGVLDKAAPVIRPNK 138 NG+L + A +R + Sbjct: 122 NGILGQLARELREAR 136 >UniRef50_A6Q4Q9 N utilization substance protein B homolog n=20 Tax=Epsilonproteobacteria RepID=NUSB_NITSB Length = 139 Score = 151 bits (382), Expect = 8e-36, Method: Composition-based stats. Identities = 44/137 (32%), Positives = 75/137 (54%), Gaps = 2/137 (1%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 A R +ARE + LY++ L +I L E+ +++ + L G + +D Sbjct: 2 ATRHQAREAVIGLLYAYDLGNPEIKKFAEDILEEKKIRNKQREFALALFKGTVEHLDTID 61 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++K +L +E +G +E+A+LR+ +YEL +D+ + INEA+ELAK G + S KF Sbjct: 62 EMIKKHLESWDMERVGHIERAILRLGVYELFY-TDLDPAIVINEAVELAKKLGTDQSPKF 120 Query: 123 VNGVLDKAAPVIRPNKK 139 +NGVLD A ++ + Sbjct: 121 INGVLDAIAKEVKNGSQ 137 >UniRef50_Q3BXH9 N utilization substance protein B homolog n=20 Tax=Xanthomonadaceae RepID=NUSB_XANC5 Length = 162 Score = 150 bits (381), Expect = 1e-35, Method: Composition-based stats. Identities = 63/124 (50%), Positives = 81/124 (65%) Query: 15 QALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLL 74 QA+Y+WQ+S V QF EQ + D+ YF L+ GV +N A LD + PYL R + Sbjct: 30 QAVYAWQISGGFAKQVIAQFAHEQAHEVADLAYFENLVEGVLSNRAELDTALTPYLDRSV 89 Query: 75 EELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVI 134 EE+ +E+AVLR+A YEL R DVPY+V INEAIE AK FG+E H +VNGVLD+AA Sbjct: 90 EEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRFGSEHGHTYVNGVLDRAAVEW 149 Query: 135 RPNK 138 R + Sbjct: 150 RKVE 153 >UniRef50_C7LSH4 NusB antitermination factor n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LSH4_DESBD Length = 154 Score = 150 bits (379), Expect = 1e-35, Method: Composition-based stats. Identities = 49/142 (34%), Positives = 76/142 (53%), Gaps = 6/142 (4%) Query: 3 PAARRRARECAVQALYSW----QLSQNDIADVEYQFLAEQDVK-DVDVLYFRELLAGVAT 57 RR R A Q +YS ++S++ + F E++ + Y L+ GV Sbjct: 2 THNRRHQRRFAFQVIYSLVFGQKMSKDSLIKSFDNFWTEEEFDMERQDSYAWTLVEGVFD 61 Query: 58 NTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 N +D ++ + L + +VE +LR++L+E+ D+P KVA+NEAIELAK FG Sbjct: 62 NYDSIDEIITQHSQHWKLNRIAKVELTILRLSLFEMLFCPDIPIKVAMNEAIELAKDFGD 121 Query: 117 EDSHKFVNGVLDKAAPVIRPNK 138 ++S FVNGVLD AA + N+ Sbjct: 122 DNSKTFVNGVLDAAAKGAQRNE 143 >UniRef50_Q67NA9 N utilization substance protein B homolog n=2 Tax=Clostridiales RepID=NUSB_SYMTH Length = 153 Score = 150 bits (379), Expect = 2e-35, Method: Composition-based stats. Identities = 45/140 (32%), Positives = 74/140 (52%), Gaps = 9/140 (6%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQ--------DVKDVDVLYFRELLAGVA 56 +RR+ARE A+QAL+ ++ D Q L + +++ + R L+ G Sbjct: 2 SRRKARELALQALFQMDIAGTDPDTAVAQALTRETEPDWAPDRLEEESAEFARRLVRGAW 61 Query: 57 TNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG 115 + D L+ Y +E + V++A+LR+A+YE+ DVP VA+ EA+ELAK+F Sbjct: 62 QHREESDRLIAQYARGWRVERMAAVDRAILRMAVYEIVHSEDVPDSVAVAEAVELAKTFS 121 Query: 116 AEDSHKFVNGVLDKAAPVIR 135 DS +FVNG+L ++ Sbjct: 122 TADSSRFVNGILGSVIRGMK 141 >UniRef50_B5JUN2 Transcription antitermination factor NusB n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JUN2_9GAMM Length = 188 Score = 149 bits (378), Expect = 2e-35, Method: Composition-based stats. Identities = 58/145 (40%), Positives = 88/145 (60%), Gaps = 7/145 (4%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQ-------DVKDVDVLYFRELLAG 54 + ARR+ R+ +QALY + + + QF ++ D+ VD +F+ L+ Sbjct: 44 RTEARRKTRQRILQALYQCYFNPLPSSKLVQQFYDDEVGEEEGNDMFGVDADFFQAALST 103 Query: 55 VATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 T LD L +L ++ L VE +LR+A++ELS+R DVP +V INEA+ELAKS+ Sbjct: 104 CVDKTEQLDELYCAHLKMPIDRLDPVELCILRLAVFELSERLDVPRRVVINEAVELAKSY 163 Query: 115 GAEDSHKFVNGVLDKAAPVIRPNKK 139 GAED HKF+NGV+DK A +RP+++ Sbjct: 164 GAEDGHKFINGVIDKTARDLRPHEQ 188 >UniRef50_B3QV72 N utilization substance protein B homolog n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=NUSB_CHLT3 Length = 211 Score = 149 bits (377), Expect = 3e-35, Method: Composition-based stats. Identities = 42/134 (31%), Positives = 74/134 (55%), Gaps = 2/134 (1%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDV-DVLYFRELLAGVATNTAYLD 63 +RR+ RE A+Q LY++++ + + V + E V D+ + +++ V N +D Sbjct: 4 SRRQIRELAMQVLYAYEVRKEKVDKVAKGIIPEDVVADIKAKDFIFKIINSVIQNIQDID 63 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + + L + ++K ++RIA+ E+ DVP KV+INEAIE+AK + + S KF Sbjct: 64 THIAKHADNWELNRMAIIDKNLMRIAIAEMLYLDDVPPKVSINEAIEIAKRYSTDKSSKF 123 Query: 123 VNGVLDKAAPVIRP 136 VNG+LD ++ Sbjct: 124 VNGILDATYNEVKS 137 >UniRef50_A5FQ51 N utilization substance protein B homolog n=5 Tax=Dehalococcoides RepID=NUSB_DEHSB Length = 143 Score = 149 bits (376), Expect = 4e-35, Method: Composition-based stats. Identities = 49/133 (36%), Positives = 79/133 (59%), Gaps = 1/133 (0%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 +RR+ARE +QALY L+ ++ DV + L E + +V + L V + L Sbjct: 2 TTSRRKAREIVLQALYEQDLAGHNAEDVLKRLLTENPQTEENVEFIFRLTNAVVKHKDLL 61 Query: 63 DGLMKPY-LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D ++ + + +E+L +++ VLR+A++E+ +DVP KVAINEA+ELAKSFG S + Sbjct: 62 DENIRQFASAWPVEQLSYIDRNVLRLAIFEIIHENDVPVKVAINEAVELAKSFGGNSSAR 121 Query: 122 FVNGVLDKAAPVI 134 F+NGVL + + Sbjct: 122 FINGVLSSVSKAL 134 >UniRef50_Q3A4L2 N utilization substance protein B homolog n=2 Tax=Desulfuromonadales RepID=NUSB_PELCD Length = 156 Score = 148 bits (375), Expect = 4e-35, Method: Composition-based stats. Identities = 47/153 (30%), Positives = 76/153 (49%), Gaps = 18/153 (11%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKD----------------VD 44 M RR RE A++ +YS+ + + F + +D Sbjct: 1 MASGMRRTGRELAIKIIYSFD-GTGSVEALLATFWSNFRFRDDVLGEPLEDSSQAVAEPV 59 Query: 45 VLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVA 103 + +L+ GVA N +DGL+ + + LE + +V+ A+LR+A YEL DVP V Sbjct: 60 REFAEDLVRGVAENLEKIDGLIGEFSTNWSLERMARVDLAILRMATYELLGHLDVPVSVI 119 Query: 104 INEAIELAKSFGAEDSHKFVNGVLDKAAPVIRP 136 INEA+E+ K +G +++ FVNG+LD+ + RP Sbjct: 120 INEAVEIGKRYGTKETPSFVNGILDRISRTCRP 152 >UniRef50_C1DB31 N utilization substance protein B homolog n=3 Tax=Neisseriaceae RepID=NUSB_LARHH Length = 165 Score = 148 bits (375), Expect = 4e-35, Method: Composition-based stats. Identities = 58/138 (42%), Positives = 83/138 (60%), Gaps = 1/138 (0%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK RRRARE AVQ +Y WQL+ A +E + D FR LL GV + Sbjct: 1 MKT-PRRRAREFAVQGIYQWQLNALTPATIEKNLRDNEQFAKADEALFRTLLYGVLNDPV 59 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 ++ + + R E++ VE+AVL +A +EL+++++ P V INEAIE+AK+FG + H Sbjct: 60 RIESAIASHFERAPEDVSPVERAVLLMAAFELTQQAETPLAVIINEAIEIAKTFGGAEGH 119 Query: 121 KFVNGVLDKAAPVIRPNK 138 +FVNGVLDK A +RP + Sbjct: 120 RFVNGVLDKYAAEVRPEE 137 >UniRef50_Q2RIA9 N utilization substance protein B homolog n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=NUSB_MOOTA Length = 145 Score = 148 bits (375), Expect = 5e-35, Method: Composition-based stats. Identities = 47/130 (36%), Positives = 73/130 (56%), Gaps = 1/130 (0%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 RR AR A+QAL++ + Q L E ++ + + REL+ G +D + Sbjct: 3 RRAARAKALQALFAIDVGGTSPDMALEQVLEEGELPPRAMTFTRELVEGTMAKRDAIDAI 62 Query: 66 MKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 ++ Y LE L V++ +LR+ALYE+ + P +V INEAIELAK+F E++ +FVN Sbjct: 63 IRKYAVGWRLERLAAVDRNILRMALYEMQYHRETPVRVVINEAIELAKNFNNEEAGRFVN 122 Query: 125 GVLDKAAPVI 134 G+LD A + Sbjct: 123 GLLDNARKDL 132 >UniRef50_C0GE32 NusB antitermination factor n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GE32_9FIRM Length = 138 Score = 148 bits (375), Expect = 5e-35, Method: Composition-based stats. Identities = 48/135 (35%), Positives = 79/135 (58%), Gaps = 1/135 (0%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 +RR ARE A + L+ + + +N++ Q + E ++ V + R+L+ G N +D Sbjct: 2 SRRLAREIAFKTLFQYDIGKNEVEPTISQLIEENGLEGAGVEFSRQLVLGTLKNLEAIDK 61 Query: 65 LMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 + YL + L L V++ VLR+A +E+ R D+P V INEA+EL+K+F +E++ KF+ Sbjct: 62 ALAGYLQKWELGRLAAVDRNVLRLAAFEILYREDIPAAVTINEALELSKAFHSEEAAKFL 121 Query: 124 NGVLDKAAPVIRPNK 138 NGVLDK A + Sbjct: 122 NGVLDKLARHHEGKE 136 >UniRef50_B3DWQ3 N utilization substance protein B homolog n=1 Tax=Methylacidiphilum infernorum V4 RepID=NUSB_METI4 Length = 143 Score = 148 bits (375), Expect = 5e-35, Method: Composition-based stats. Identities = 40/131 (30%), Positives = 70/131 (53%), Gaps = 2/131 (1%) Query: 5 ARRRARECAVQALYSWQLS-QNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +RR+ RE VQ LY W+++ + ++ F + D + L +A + ++ Sbjct: 3 SRRKIRELIVQFLYQWEMNKGVGLDNMLLDFWDFSPLDQKDKEAVEQWLKEIAEHKEAIE 62 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + Y+ L+ L V+K +L + +YE+ R D+P V+INE++E+AK + E+S KF Sbjct: 63 EKINSYVKNWSLDRLAPVDKCILILGIYEILYRKDIPPAVSINESVEIAKKYSTEESGKF 122 Query: 123 VNGVLDKAAPV 133 VNG+LD Sbjct: 123 VNGILDSVLKD 133 >UniRef50_Q1ISD3 N utilization substance protein B homolog n=2 Tax=Acidobacteria RepID=NUSB_ACIBL Length = 146 Score = 148 bits (374), Expect = 6e-35, Method: Composition-based stats. Identities = 40/141 (28%), Positives = 73/141 (51%), Gaps = 2/141 (1%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAE-QDVKDVDVLYFRELLAGVATNT 59 +K RR++RE A+Q L+ + + VE F AE +D+++ + +L + Sbjct: 3 IKTGTRRKSRELALQMLFQMDMGKQSADHVEKTFWAERKDLEEEVRSFAIDLFHVAEKRS 62 Query: 60 AYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 +D L++ + +E + V++ +LR A E P V INE++E+A+ F + + Sbjct: 63 EEIDKLIEKHAEHWRMERMAAVDRNILRGACAEFMGFPKTPKPVVINESLEIARRFSSPE 122 Query: 119 SHKFVNGVLDKAAPVIRPNKK 139 S +F+NGVLD A + +K Sbjct: 123 SVQFINGVLDSVARELDAERK 143 >UniRef50_A0LI21 N utilization substance protein B homolog n=4 Tax=Deltaproteobacteria RepID=NUSB_SYNFM Length = 151 Score = 147 bits (373), Expect = 8e-35, Method: Composition-based stats. Identities = 46/143 (32%), Positives = 79/143 (55%), Gaps = 7/143 (4%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVE---YQFLAEQDVKDVD---VLYFRELLAGVAT 57 RRR+RE A+Q LY +++ + YQ + + V + E++ GV+ Sbjct: 2 GRRRRSREMALQVLYQMEMAVLPPEEALGLYYQLFDDDEKHRVPAEVRPFAEEIVRGVSL 61 Query: 58 NTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 + A +D ++ L + V++ +LRIA++E+ D+P KV+INEAI+L K+FG+ Sbjct: 62 HRARIDEMITSASEHWRLARMSLVDRNILRIAVFEMLFCFDIPPKVSINEAIDLGKTFGS 121 Query: 117 EDSHKFVNGVLDKAAPVIRPNKK 139 DS F+NG+LD P++ N + Sbjct: 122 PDSGAFINGILDHILPLLEANGR 144 >UniRef50_B1H071 Transcription antitermination factor NusB n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1H071_UNCTG Length = 142 Score = 147 bits (371), Expect = 1e-34, Method: Composition-based stats. Identities = 44/136 (32%), Positives = 73/136 (53%), Gaps = 2/136 (1%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 RR+AREC++ LY+ I + F + ++ +L GV N LD Sbjct: 2 GTRRKARECSLHMLYAVDNCNVPIESIYNSFAVYFPKGEAYRMFALDLFKGVCDNKEDLD 61 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 L+K +E + V++ ++R+A YE+ +++P +V I+EA+E++K + +DS KF Sbjct: 62 SLIKQCAKNWEIERMAAVDRNIIRLATYEIMATTNIPIRVIIDEAVEISKKYSTKDSSKF 121 Query: 123 VNGVLDKAAPVIRPNK 138 VNG+LDK IR K Sbjct: 122 VNGILDKL-KKIRTQK 136 >UniRef50_Q2LQK4 N utilization substance protein B homolog n=1 Tax=Syntrophus aciditrophicus SB RepID=NUSB_SYNAS Length = 161 Score = 147 bits (371), Expect = 1e-34, Method: Composition-based stats. Identities = 41/132 (31%), Positives = 72/132 (54%), Gaps = 1/132 (0%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 RR ARE A+Q LYS ++ + + + + A + + L+ G + +D L Sbjct: 15 RRIAREIALQVLYSLEVVEMEAGEAIELYWAHYEAPMDARPFSSLLIEGAWKHRDQIDSL 74 Query: 66 MKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + + + + +V+K++LR+A++EL D+P KV +NEAI+L K +G+E+S F+N Sbjct: 75 IGGCSANWSIARMSKVDKSILRMAVFELCFCEDIPPKVTMNEAIDLGKVYGSENSGSFIN 134 Query: 125 GVLDKAAPVIRP 136 G+LD I Sbjct: 135 GILDALYAKIHK 146 >UniRef50_A9ET18 N utilization substance protein B homolog n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=NUSB_SORC5 Length = 140 Score = 147 bits (371), Expect = 1e-34, Method: Composition-based stats. Identities = 46/132 (34%), Positives = 73/132 (55%), Gaps = 1/132 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 AR RE A+Q L++ + + V F E Y E++ GVA + A +D Sbjct: 2 GARSTGREAALQMLFAVEAGGSSAPRVVATFWRETPGDPEGRAYADEVVVGVAEDLAAVD 61 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ + LE + +V++ VLR+ +EL R +VP V ++EA+ELAK +G+E+S F Sbjct: 62 EAIRKASTNWRLERMARVDRNVLRLGAWELMNRPEVPRAVILDEAVELAKRYGSEESGAF 121 Query: 123 VNGVLDKAAPVI 134 VNGVLD+ A + Sbjct: 122 VNGVLDRIAENL 133 >UniRef50_A0Q099 N utilization substance protein B homolog n=3 Tax=Clostridium RepID=NUSB_CLONN Length = 133 Score = 147 bits (371), Expect = 1e-34, Method: Composition-based stats. Identities = 42/131 (32%), Positives = 80/131 (61%), Gaps = 3/131 (2%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLA--EQDVKDVDVLYFRELLAGVATNTAYLD 63 RR++RE A++ L+ +++ + +++ F + ++++VD +Y +++ G+ N +D Sbjct: 3 RRKSREVAMKLLFEMSINKEEFSEILKNFKENTDTNMENVDFIYINKIVNGIEQNKEDID 62 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ L++ L L +++ +LRI+ YE+ D+P KVA+NEAIELAK + A++S F Sbjct: 63 KKIEENLTKWKLNRLSKIDLTILRISTYEIMFMEDIPNKVAVNEAIELAKKYSADNSPAF 122 Query: 123 VNGVLDKAAPV 133 VNGVL Sbjct: 123 VNGVLGNMIKA 133 >UniRef50_A7HDY2 N utilization substance protein B homolog n=4 Tax=Anaeromyxobacter RepID=NUSB_ANADF Length = 143 Score = 147 bits (371), Expect = 2e-34, Method: Composition-based stats. Identities = 55/136 (40%), Positives = 82/136 (60%), Gaps = 3/136 (2%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLY-FRELLAGVATNTAYLDG 64 R RARE A+QALY ++ I D +F + + +V+ + GVA + +D Sbjct: 5 RTRARERALQALYQIDVAAEGIDDALSRFWKSFEPVEREVMEDAEGFVRGVAAHRRTIDD 64 Query: 65 LMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 ++ + L+ + +V++ VLR+A+YEL R+DVP KVAINEAIEL K +G+E S FV Sbjct: 65 TIEGVSTNWRLDRMAKVDRNVLRLAVYELL-RTDVPVKVAINEAIELGKKYGSESSGAFV 123 Query: 124 NGVLDKAAPVIRPNKK 139 NGVLDK A + P ++ Sbjct: 124 NGVLDKVAAGLPPERR 139 >UniRef50_B9L0C6 Transcription antitermination factor NusB n=2 Tax=Thermomicrobia (class) RepID=B9L0C6_THERP Length = 168 Score = 146 bits (370), Expect = 2e-34, Method: Composition-based stats. Identities = 45/130 (34%), Positives = 74/130 (56%), Gaps = 1/130 (0%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 RR+AR A+Q LY ++ + + +V + ++ + Y L+ GV + +D + Sbjct: 34 RRQARILALQILYEVDVANHSLEEVLERHRSQASIAQPVRRYAERLVTGVWADRERIDRM 93 Query: 66 MKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + + +++L V++ +LRIA+YEL DVP K AINEA+E+AK +G E S +FVN Sbjct: 94 IAEAAPAFPVDQLPPVDRNILRIAIYELLHEPDVPLKAAINEAVEIAKQYGGESSSRFVN 153 Query: 125 GVLDKAAPVI 134 GVL A + Sbjct: 154 GVLGTIAANL 163 >UniRef50_D1CCN3 NusB antitermination factor n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CCN3_THET1 Length = 153 Score = 146 bits (370), Expect = 2e-34, Method: Composition-based stats. Identities = 47/132 (35%), Positives = 78/132 (59%), Gaps = 1/132 (0%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R +AR A+Q LY + ++ ++ + E+++ + Y +L GV N D L Sbjct: 12 RHQARALAMQVLYEAETTRKQPYEILQRRRNEENIPEQVHAYASDLAIGVWQNRKEYDSL 71 Query: 66 MKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + + + ++++ +V++ +LRIA++E+ +R+DVP AINEA+ELAK +GAE S KFVN Sbjct: 72 ITRFTPTWTIDQMAKVDRNILRIAVHEMLRRNDVPIAAAINEAVELAKEYGAEASPKFVN 131 Query: 125 GVLDKAAPVIRP 136 GVL A I Sbjct: 132 GVLGAIADAIES 143 >UniRef50_A5G3J8 N utilization substance protein B homolog n=7 Tax=Desulfuromonadales RepID=NUSB_GEOUR Length = 145 Score = 146 bits (369), Expect = 2e-34, Method: Composition-based stats. Identities = 49/144 (34%), Positives = 77/144 (53%), Gaps = 9/144 (6%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQ--------DVKDVDVLYFRELLAGV 55 ++RR RE A+QALYS + D V + + D + EL+ GV Sbjct: 2 SSRREGRELALQALYSSDVEVMDGTTVLKRIMENFGDGSEPAVDAHSRSFSFAAELVNGV 61 Query: 56 ATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 N A +D ++ + + +V+ +LR+A++EL R D+P V INEAIE+AK F Sbjct: 62 VANRAAIDQRIEEKSKNWSISRMARVDLNILRLAVFELFYRPDIPKNVTINEAIEVAKKF 121 Query: 115 GAEDSHKFVNGVLDKAAPVIRPNK 138 GA+DS F+NG+LD+ A ++ + Sbjct: 122 GADDSPAFINGILDEIASLLPDKE 145 >UniRef50_C8W0Z5 NusB antitermination factor n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W0Z5_DESAS Length = 156 Score = 145 bits (368), Expect = 3e-34, Method: Composition-based stats. Identities = 41/135 (30%), Positives = 74/135 (54%), Gaps = 3/135 (2%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 +RR R+ A+Q L+ ++ D + +A+ + + R+L+ G + +D Sbjct: 2 SRREGRQIAMQILFQIEVGGIDPEEAFKNTVADSTCPVPIMEFARQLVFGTLGHLKEIDR 61 Query: 65 LMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 ++ L+ + V+K ++R+ALYE+ ++P V+ NEAIELAK FG E+S KFV Sbjct: 62 VISEISKGWRLDRIANVDKTLIRMALYEIFYEDNIPLNVSANEAIELAKIFGGEESGKFV 121 Query: 124 NGVLDKAAPVIRPNK 138 NG++ K +P++ Sbjct: 122 NGIIGKVVQ--KPDE 134 >UniRef50_C8WLN1 NusB antitermination factor n=2 Tax=Coriobacteriaceae RepID=C8WLN1_EGGLE Length = 195 Score = 145 bits (368), Expect = 3e-34, Method: Composition-based stats. Identities = 45/139 (32%), Positives = 74/139 (53%), Gaps = 3/139 (2%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 K R AR A+Q LY+ +++ A + + + D Y +L+ GV ++ Sbjct: 4 KRHERTSARRAALQVLYTSEITDESPAAI-AEGNSRLDEDGPLPEYALKLVLGVESHRCA 62 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED-S 119 +D + L + V++++LR+A +E+ DVP V INEA+ELAK FG ED S Sbjct: 63 IDNHLAATSENWSLARMPIVDRSILRLATFEMMYIDDVPTSVTINEAVELAKDFGGEDES 122 Query: 120 HKFVNGVLDKAAPVIRPNK 138 H+FVNG+L + A ++ + Sbjct: 123 HRFVNGILGRIAKMLEGEE 141 >UniRef50_D2LH50 NusB antitermination factor n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LH50_RHOVA Length = 185 Score = 145 bits (368), Expect = 3e-34, Method: Composition-based stats. Identities = 49/140 (35%), Positives = 78/140 (55%), Gaps = 7/140 (5%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAE-----QDVKDVDVLYFRELLAGVATNTA 60 R RAR AVQALY +++Q D++ V +FL + D +FR+++ G+A A Sbjct: 21 RTRARLAAVQALYQMEMTQRDLSLVLQEFLGRRFETVEIYAGADRSFFRDIVEGIARGQA 80 Query: 61 YLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 +D + +L+ L + + +A+LR +YEL+ R+DVP + INE +E+AK F + Sbjct: 81 KIDLEIAAHLASGWKLSRIDSILRAILRSGVYELTDRNDVPARAVINEYVEIAKDFFGGE 140 Query: 119 SHKFVNGVLDKAAPVIRPNK 138 VNGVLD+ A R + Sbjct: 141 EPGVVNGVLDRVARAKRSRE 160 >UniRef50_UPI0001C42A93 transcription antitermination protein NusB n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42A93 Length = 135 Score = 145 bits (368), Expect = 3e-34, Method: Composition-based stats. Identities = 45/135 (33%), Positives = 75/135 (55%), Gaps = 4/135 (2%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 RR AR A QALY L+ +++ L + + +F +L+ G +D Sbjct: 3 RRLARLRAAQALYQMDLTGSEMESAIESVLEDNE---KQSEFFTQLVQGTTELKTKIDET 59 Query: 66 MKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + L + +G V++A++R+A+YE+ + D+P V NEAIELAK+FG E++ +FVN Sbjct: 60 ISANLEGWTISRMGHVDRAIIRMAMYEMLEVEDIPVNVTFNEAIELAKAFGGEEAGRFVN 119 Query: 125 GVLDKAAPVIRPNKK 139 GVL K+ + ++K Sbjct: 120 GVLSKSIETLNLDRK 134 >UniRef50_B2S4Q2 N utilization substance protein B homolog n=3 Tax=Treponema RepID=NUSB_TREPS Length = 141 Score = 145 bits (367), Expect = 4e-34, Method: Composition-based stats. Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 3/131 (2%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKD--VDVLYFRELLAGVATNTAYL 62 RRRAR A QAL++W + + ++ D+ + R L G + + Sbjct: 9 GRRRARILAFQALFAWDAAGITPETLTQFTWLRRNPPPSTQDLGFSRLLFLGTLEHLREI 68 Query: 63 DGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 DG + L L +V+KA+LR++ Y L + D+P V I+EA+ +A+ FG +DS + Sbjct: 69 DGCVSSRLEHWDFVRLNKVDKAILRLSAYSLLFQKDIPPVVVIHEAVSIARDFGTDDSFR 128 Query: 122 FVNGVLDKAAP 132 FVNGVLD A Sbjct: 129 FVNGVLDNIAK 139 >UniRef50_Q5P3H4 N utilization substance protein B homolog n=9 Tax=Betaproteobacteria RepID=NUSB_AZOSE Length = 145 Score = 144 bits (365), Expect = 6e-34, Method: Composition-based stats. Identities = 54/128 (42%), Positives = 70/128 (54%) Query: 11 ECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL 70 E A+Q +Y W LS N + +E D F LL G N L P++ Sbjct: 12 EFALQGIYQWLLSANSMLLIEEHVSQVSGFDKADRELFISLLRGTLNNVDDLQAEFAPFI 71 Query: 71 SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 R + EL VE+A+L +A +EL D PY+V INEAIELAKS+G D H+FVNGVLDK Sbjct: 72 HRAVHELSPVERAILLLATHELKHNLDTPYRVIINEAIELAKSYGGTDGHRFVNGVLDKL 131 Query: 131 APVIRPNK 138 A +R + Sbjct: 132 ATQLRVTE 139 >UniRef50_B6WQ80 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WQ80_9DELT Length = 157 Score = 144 bits (365), Expect = 7e-34, Method: Composition-based stats. Identities = 51/143 (35%), Positives = 77/143 (53%), Gaps = 7/143 (4%) Query: 2 KPAARRRARECAVQALYSWQLSQ-NDIADVEYQFLAEQDVKDVDVL-----YFRELLAGV 55 K A+RR R A Q LY + + DV FL D ++ + + +L+ GV Sbjct: 5 KSASRRGERAQAFQVLYGLSFADATSLEDVRRAFLQSPDHQESEEGELPSGFSWDLVQGV 64 Query: 56 ATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 + LD + + ++ +G+VE +LR+A+YEL R DVP KVAINEA+EL + F Sbjct: 65 WSRRDELDKTISRFSRNWRVDRMGRVELTLLRLAMYELLYRQDVPAKVAINEALELTRQF 124 Query: 115 GAEDSHKFVNGVLDKAAPVIRPN 137 G +++ FVNG+LD AA + Sbjct: 125 GEDNATSFVNGILDAAAKALEKG 147 >UniRef50_B4D6X5 NusB antitermination factor n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6X5_9BACT Length = 151 Score = 144 bits (365), Expect = 8e-34, Method: Composition-based stats. Identities = 50/143 (34%), Positives = 75/143 (52%), Gaps = 7/143 (4%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFL-----AEQDVKDVDVLYFRELLAGVATN 58 RR RE AVQ LY LS + E ++ + V ++ +L GV + Sbjct: 2 GKRREGREAAVQYLYQIDLSGETPVNAEQFWMLRSGPGKAPVAPKTRIFAEQLALGVRKH 61 Query: 59 TAYLDGLMKPYLSR-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 +DG +K Y + L+ L V++ +LR+A+YEL DV + INEAIE+AK FG + Sbjct: 62 LEEIDGYIKKYTANYELDRLAVVDRNILRVAIYELLHSPDVAPVIIINEAIEVAKKFGTD 121 Query: 118 DSHKFVNGVLDKAAPVI-RPNKK 139 S FVNG+LD+ + RP ++ Sbjct: 122 KSGGFVNGILDRIKEEVGRPARE 144 >UniRef50_Q5F9Y0 N utilization substance protein B homolog n=22 Tax=Neisseria RepID=NUSB_NEIG1 Length = 141 Score = 144 bits (364), Expect = 8e-34, Method: Composition-based stats. Identities = 59/138 (42%), Positives = 80/138 (57%), Gaps = 1/138 (0%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK A RRR+RE AVQA+Y +++ ++ D D F +L G TN A Sbjct: 1 MKTA-RRRSRELAVQAVYQSLINRTAAPEIAKNIREMSDFAKADEELFNKLFFGTQTNAA 59 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 ++P L R ++L +E+AVL A +ELS + PY V INEAIE+ K+FG D H Sbjct: 60 DYIQKIRPLLDRDEKDLNPIERAVLLTACHELSAMPETPYPVIINEAIEVTKTFGGTDGH 119 Query: 121 KFVNGVLDKAAPVIRPNK 138 KFVNG+LDK A IRP++ Sbjct: 120 KFVNGILDKLAAQIRPDE 137 >UniRef50_Q5WF59 N utilization substance protein B homolog n=2 Tax=Bacillus RepID=NUSB_BACSK Length = 133 Score = 144 bits (363), Expect = 1e-33, Method: Composition-based stats. Identities = 45/134 (33%), Positives = 71/134 (52%), Gaps = 4/134 (2%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 RR AR AVQ LY L ++ L +++ ++ L+ G + +DG Sbjct: 3 RRVARLRAVQTLYQLTLIDINVDKAIENTLNDEEEPS---EFYNTLVHGTLEHQDEIDGY 59 Query: 66 MKPYLSR-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + L L+ LG V++A+ R+ L+E+ D+P V +NEAIELAK+FG D+ +F+N Sbjct: 60 LSENLKGYTLDRLGHVDRAIARMGLFEMLYLDDIPVNVTLNEAIELAKAFGGTDAGRFIN 119 Query: 125 GVLDKAAPVIRPNK 138 GVL + + NK Sbjct: 120 GVLSNSYDMAMKNK 133 >UniRef50_Q1NRI6 NusB antitermination factor n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NRI6_9DELT Length = 135 Score = 144 bits (363), Expect = 1e-33, Method: Composition-based stats. Identities = 47/131 (35%), Positives = 74/131 (56%), Gaps = 1/131 (0%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 M RR+ARE A+QALY ++ D + + Y RELLAG+ + Sbjct: 1 MAVGTRRKARELALQALYQGEMLGVGALDTLPSLCENFEASRRALPYARELLAGIEAHGE 60 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D + + L+ + +++ ++RIA+YE+ R +VP VAI+EA+ELAK +GA+DS Sbjct: 61 AIDAAIDAAAANWRLDRMSYIDRNLMRIAVYEMRWRDEVPAGVAIDEAVELAKRYGADDS 120 Query: 120 HKFVNGVLDKA 130 F+NG+LD Sbjct: 121 PAFINGILDAV 131 >UniRef50_B7IXH3 N utilization substance protein B homolog n=82 Tax=Bacillales RepID=NUSB_BACC2 Length = 130 Score = 143 bits (362), Expect = 1e-33, Method: Composition-based stats. Identities = 44/130 (33%), Positives = 72/130 (55%), Gaps = 3/130 (2%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 RR ARE A+QALY ++ V + D + + L+ G N +D Sbjct: 3 RRTARERAMQALYQMDITGELEPKVAVE--NTLDEGEETNEFLESLVVGFVENKEAIDEA 60 Query: 66 MKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 ++ L + LE + V++++LR+A+YE+ ++P+ V INEAIE+AK+FG E+S +F+N Sbjct: 61 IRQNLKKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIEIAKTFGDEESRRFIN 120 Query: 125 GVLDKAAPVI 134 GVL + Sbjct: 121 GVLSNIKDTL 130 >UniRef50_B4SCZ7 N utilization substance protein B homolog n=2 Tax=Chlorobium/Pelodictyon group RepID=NUSB_PELPB Length = 171 Score = 143 bits (361), Expect = 2e-33, Method: Composition-based stats. Identities = 46/142 (32%), Positives = 75/142 (52%), Gaps = 4/142 (2%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDV-LYFRELLAGVATNT 59 MK RR+ RE +QALY+ ++ DI L E+ + D + +F LL + + Sbjct: 1 MKTY-RRQIREKILQALYTIEIRDTDIDSAAGWLLTEEILADPNAMKFFNMLLKNIKEHM 59 Query: 60 AYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF-GAE 117 +D + + + + ++K ++R+AL E+ D+P KV+INEAIE+AK F + Sbjct: 60 EEIDRYIVKHTFNWDMSRIAIIDKNIIRMALTEILYCEDIPPKVSINEAIEIAKKFNSTD 119 Query: 118 DSHKFVNGVLDKAAPVIRPNKK 139 S KFVNG+LD ++ K Sbjct: 120 KSSKFVNGILDAIFNDLKNEGK 141 >UniRef50_D2L8L5 NusB antitermination factor n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L8L5_9DELT Length = 167 Score = 143 bits (361), Expect = 2e-33, Method: Composition-based stats. Identities = 49/142 (34%), Positives = 73/142 (51%), Gaps = 7/142 (4%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAE------QDVKDVDVLYFRELLAGVAT 57 A+RR+AR+ A + LY + A + + EL+ GV Sbjct: 19 ASRRKARKQAFECLYGLIFESAADERSLRRVFARCPHDVMEGEDGAGQAFAWELVQGVWQ 78 Query: 58 NTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 N LD L+ + L + +VE +LR+ALYE+ RSD+P +VA+NEAIELAK +G Sbjct: 79 NQRELDALIVKFSKNWKLSRIAKVELTILRLALYEILHRSDIPLRVALNEAIELAKRYGD 138 Query: 117 EDSHKFVNGVLDKAAPVIRPNK 138 E+S F+NG+LD A + + Sbjct: 139 ENSRNFINGILDAVAKAVDSGE 160 >UniRef50_UPI0001745093 NusB antitermination factor n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001745093 Length = 145 Score = 143 bits (361), Expect = 2e-33, Method: Composition-based stats. Identities = 43/135 (31%), Positives = 66/135 (48%), Gaps = 2/135 (1%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 M RR R+ A+Q L++ + F + L+ G+ T+ Sbjct: 1 MAIGKRREGRQAAMQFLFAHDVHGKVEDTDRAAFWTLHSATQDIRAHAESLVTGIKTHQV 60 Query: 61 YLDGLMKPYLSR-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D + L E LG V++ +LR+A+YE+ ++VP V INEA+E++K FG + Sbjct: 61 QIDDCIAATLENFRFERLGVVDRNILRLAVYEMLH-TEVPVPVVINEAVEISKVFGDTQT 119 Query: 120 HKFVNGVLDKAAPVI 134 FVNGVLDK A I Sbjct: 120 RAFVNGVLDKIAKRI 134 >UniRef50_Q6MNX9 N utilization substance protein B homolog n=1 Tax=Bdellovibrio bacteriovorus RepID=NUSB_BDEBA Length = 135 Score = 142 bits (360), Expect = 3e-33, Method: Composition-based stats. Identities = 43/135 (31%), Positives = 74/135 (54%), Gaps = 3/135 (2%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK ARR+ARE A+Q L+ + + + EQ + + Y ++ GV +N Sbjct: 1 MKLTARRQARELALQVLFQTEFAPQISYQTFLEVF-EQSLDPEVITYADLIVTGVKSNKE 59 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSD-VPYKVAINEAIELAKSFGAED 118 +D ++ + +E + +++ +LRIA+YE+ +D + +AINEA+E+AK +G D Sbjct: 60 AIDSKIQASSAHWKVERMATIDRNILRIAVYEMRFAADPIKENIAINEAVEIAKKYGTSD 119 Query: 119 SHKFVNGVLDKAAPV 133 S FVNG+LD+ Sbjct: 120 SGSFVNGLLDQVGKA 134 >UniRef50_B1LAQ8 N utilization substance protein B homolog n=10 Tax=Thermotogaceae RepID=NUSB_THESQ Length = 142 Score = 142 bits (360), Expect = 3e-33, Method: Composition-based stats. Identities = 46/138 (33%), Positives = 74/138 (53%), Gaps = 1/138 (0%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 RRR R +AL+ + +++ + + + ++ R + G+ N + Sbjct: 2 KTPRRRMRLAVFKALFQHEFRRDEDLEQILEEILDETYDKKAKEDARRYIRGIKENLPMI 61 Query: 63 DGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D L+ YL + L L V++ VLR+A YEL D+P +V I+EAIE+AK +G E+S K Sbjct: 62 DNLISRYLEKWSLNRLSAVDRNVLRLATYELLFEKDIPIEVTIDEAIEIAKRYGTENSGK 121 Query: 122 FVNGVLDKAAPVIRPNKK 139 FVNG+LD+ A P +K Sbjct: 122 FVNGILDRIAKEHAPKEK 139 >UniRef50_Q6AP93 N utilization substance protein B homolog n=1 Tax=Desulfotalea psychrophila RepID=NUSB_DESPS Length = 141 Score = 142 bits (360), Expect = 3e-33, Method: Composition-based stats. Identities = 45/134 (33%), Positives = 70/134 (52%), Gaps = 7/134 (5%) Query: 4 AARRRARECAVQALYSWQL------SQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVAT 57 + RR ARE A+Q LY + ++ + QF V Y L+AGV Sbjct: 2 SIRRFAREAALQFLYQDDFIPESADTPGELKERFEQFCEIYQVNKKGRTYALNLIAGVLA 61 Query: 58 NTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 + +D L++ + + ++ +LR+A +E++ DVP +VAINEA+E+AK F Sbjct: 62 DQEAIDRLIEEAAVNWRMSRISATDRNLLRVATFEINFCDDVPAEVAINEAVEIAKRFCG 121 Query: 117 EDSHKFVNGVLDKA 130 ++S KFVNGVLD Sbjct: 122 DESPKFVNGVLDAV 135 >UniRef50_B0S1M1 N utilization substance protein B homolog n=2 Tax=Finegoldia magna RepID=NUSB_FINM2 Length = 137 Score = 142 bits (359), Expect = 3e-33, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 70/130 (53%), Gaps = 1/130 (0%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 +RR++R+ A+Q +Y ++ + +F Q++ D+ +F+E++ + + Sbjct: 2 SRRQSRKSAMQLIYEMNMNGDYDKQRIEEFCKYQNINKNDIEFFKEIVLNFIEHIDDIVN 61 Query: 65 LMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 +++ + L+ + +++ ++L++ + E+ P VAINEA+ELAK + E S+ F+ Sbjct: 62 IIENNTKQWNLDRINKLDLSILQVGVCEILYVESTPDSVAINEAVELAKEYSTEKSYSFI 121 Query: 124 NGVLDKAAPV 133 NG+L Sbjct: 122 NGILGSVLKR 131 >UniRef50_C0ZC03 N utilization substance protein B n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZC03_BREBN Length = 137 Score = 142 bits (358), Expect = 4e-33, Method: Composition-based stats. Identities = 50/128 (39%), Positives = 71/128 (55%), Gaps = 4/128 (3%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 M RR ARE VQ L+ +++ + D + E + + Y R LL GV N Sbjct: 1 MNGMKRRTAREKVVQCLFQIDMAEVPLTDAVALVMEE---SEENAQYLRYLLDGVLKNLT 57 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D +K YL LE + V++A+LR+A YE+ D P KV +NEAIE+AK F E S Sbjct: 58 EIDAEIKKYLRGWQLERIANVDRAILRLAFYEIMFEQDTPDKVVMNEAIEVAKLFSDEQS 117 Query: 120 HKFVNGVL 127 H+++NGVL Sbjct: 118 HRYINGVL 125 >UniRef50_C6CU26 NusB antitermination factor n=3 Tax=Bacillales RepID=C6CU26_PAESJ Length = 153 Score = 142 bits (358), Expect = 4e-33, Method: Composition-based stats. Identities = 56/139 (40%), Positives = 84/139 (60%), Gaps = 11/139 (7%) Query: 6 RRRARECAVQALYSWQLSQNDIADVE----YQFLAEQDVK------DVDVLYFRELLAGV 55 RR ARE AV +LY ++++ + + +E +++ D Y REL+ GV Sbjct: 3 RRLAREIAVSSLYQLEMNEVTPMEAVDMLMEEARSENEIEAEFVENDQTDNYVRELVNGV 62 Query: 56 ATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 A N A +D ++ YL+ ++ L +V++ +LR+A +E++ R+DVP K AINEAIELAK F Sbjct: 63 AENKAAIDERLQHYLTGWQVDRLSRVDRQILRLAYFEIAYRNDVPPKAAINEAIELAKHF 122 Query: 115 GAEDSHKFVNGVLDKAAPV 133 G E+S KFVNGVL K Sbjct: 123 GTEESGKFVNGVLGKLLKE 141 >UniRef50_A1WVG0 N utilization substance protein B homolog n=1 Tax=Halorhodospira halophila SL1 RepID=NUSB_HALHL Length = 155 Score = 142 bits (358), Expect = 5e-33, Method: Composition-based stats. Identities = 59/129 (45%), Positives = 86/129 (66%), Gaps = 1/129 (0%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R RAR VQALY + ++ D+E QFLA + D+DV YFREL+ GV A LD Sbjct: 10 RSRARSKLVQALYQYAVTGASAEDIERQFLA-AGLGDIDVAYFRELIYGVTDRAAELDEQ 68 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 + L R L +L VE+++LR+ +ELS+R +VPY+V I+E++ELA+ FGA+ SH+++NG Sbjct: 69 LSALLDRPLVQLDPVERSILRLGAFELSERLEVPYRVVIDESVELARRFGADQSHRYING 128 Query: 126 VLDKAAPVI 134 VLD+ + Sbjct: 129 VLDRFGATV 137 >UniRef50_D1VSJ6 Transcription antitermination factor NusB n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSJ6_9FIRM Length = 139 Score = 141 bits (357), Expect = 5e-33, Method: Composition-based stats. Identities = 40/134 (29%), Positives = 75/134 (55%), Gaps = 1/134 (0%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 R+ AR A+Q LYS +L+++ + +F D + + Y +++ + N +D Sbjct: 2 GRKNARVGAMQLLYSMELNKDFSQENIEKFFENYDFSESEQSYINSVISELVNNLDSVDK 61 Query: 65 LMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 ++ L + L V++ +LR+A++E R D+P +V+INEA+E+AK + +E+S KFV Sbjct: 62 VLSDNLQGWTIPRLATVDREILRVAIFEFLYRKDIPVEVSINEAVEIAKKYSSEESPKFV 121 Query: 124 NGVLDKAAPVIRPN 137 NG+L ++ Sbjct: 122 NGILASILKNLKDE 135 >UniRef50_Q0AZF7 N utilization substance protein B homolog n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=NUSB_SYNWW Length = 134 Score = 141 bits (357), Expect = 6e-33, Method: Composition-based stats. Identities = 38/127 (29%), Positives = 65/127 (51%), Gaps = 1/127 (0%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 +RR+ARE A + ++ Q D + + + + + +L+ G A +D Sbjct: 2 SRRKARETAFKVVFQVDQVQADAKKAFDYLVLHDKLAEKNQGFSWDLIQGTLEKQAEIDQ 61 Query: 65 LMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 ++ Y L+ + V++ ++R+A YE+ D VAI+EAIE+AK +G E S FV Sbjct: 62 MIASYSREWALDRMSSVDRNIMRVAAYEILYLEDSQAVVAIDEAIEIAKKYGDEGSGSFV 121 Query: 124 NGVLDKA 130 N +LDK Sbjct: 122 NAILDKI 128 >UniRef50_C5CI90 NusB antitermination factor n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CI90_KOSOT Length = 148 Score = 141 bits (356), Expect = 7e-33, Method: Composition-based stats. Identities = 42/140 (30%), Positives = 72/140 (51%), Gaps = 3/140 (2%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAE--QDVKDVDVLYFRELLAGVATNTA 60 RR+ RE ++++ + ++ A +EY + + L G+ + Sbjct: 6 TGQRRKIREIVFRSIFQYDFHKDFPAAMEYLERETAFYSLDKESKNRAKGYLMGIIEHLD 65 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D ++ YL + L ++++VLR+A YEL DVP +V +NEAIE+ K +G+++ Sbjct: 66 EIDSIITAYLKNWTFDRLASIDRSVLRLATYELLYVDDVPIEVTLNEAIEITKKYGSQEE 125 Query: 120 HKFVNGVLDKAAPVIRPNKK 139 KFVNGVLDK A +K Sbjct: 126 GKFVNGVLDKIAKERVSEEK 145 >UniRef50_A6CAX2 Transcription antitermination protein NusB n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CAX2_9PLAN Length = 171 Score = 141 bits (356), Expect = 8e-33, Method: Composition-based stats. Identities = 40/129 (31%), Positives = 62/129 (48%), Gaps = 2/129 (1%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R++AR VQ LY L+ + + + + E + EL GV LD Sbjct: 4 RKQARFLVVQMLYQIDLNPDISINEIREMIEEHGRNKTARTFAWELFTGVMEFKQQLDEH 63 Query: 66 MKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + L+ + ++ +LR+ YEL +D P V I+EA+ELA+ FG+ S +FVN Sbjct: 64 IVRVAENWTLKRMAVTDRNILRLGTYELLH-TDTPPAVVIDEAVELAREFGSAHSSQFVN 122 Query: 125 GVLDKAAPV 133 G+LDK Sbjct: 123 GILDKVVQR 131 >UniRef50_C6BYC6 NusB antitermination factor n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BYC6_DESAD Length = 155 Score = 140 bits (355), Expect = 9e-33, Method: Composition-based stats. Identities = 52/139 (37%), Positives = 71/139 (51%), Gaps = 6/139 (4%) Query: 6 RRRARECAVQALYSWQL----SQNDIADVEYQFLAEQDVKDVD-VLYFRELLAGVATNTA 60 RR+ R A Q LY + Q A + D +L+ RELL G+ Sbjct: 10 RRKGRVLAFQVLYGLSFVPPHGGWTTERIYNQSPAVIRETEEDLILFARELLIGIWNAQE 69 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 LD ++ Y +E + +VE A+LR+A+YEL + D+P KV INE IELAK FG +S Sbjct: 70 ELDEVIGRYSKHWKIERIAKVELAILRLAVYELVHKPDIPLKVGINEGIELAKKFGDGNS 129 Query: 120 HKFVNGVLDKAAPVIRPNK 138 F+NG+LD A I K Sbjct: 130 RNFINGILDAVARDIDTGK 148 >UniRef50_C7N4M1 Transcription antitermination factor NusB n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N4M1_SLAHD Length = 183 Score = 140 bits (355), Expect = 9e-33, Method: Composition-based stats. Identities = 43/137 (31%), Positives = 74/137 (54%), Gaps = 3/137 (2%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 K R R A+Q LY + + V + + ++ D Y R LL GVA++ Sbjct: 3 KRYDRTLGRRAALQVLYESDILGTPVDKVVDEGVVPEEAALND--YARRLLLGVASHITD 60 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D + ++ + V++A+LRI ++E+ +VP V+INEA+ELAK FG +D++ Sbjct: 61 IDRQISKSSKNWAIDRMPLVDRALLRITVFEMQHVDEVPVAVSINEAVELAKDFGGDDTY 120 Query: 121 KFVNGVLDKAAPVIRPN 137 +FVNG+L + A + + Sbjct: 121 RFVNGILGRIARTMGED 137 >UniRef50_C4L3F7 N utilization substance protein B homolog n=2 Tax=Exiguobacterium RepID=NUSB_EXISA Length = 128 Score = 140 bits (354), Expect = 1e-32, Method: Composition-based stats. Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 5/129 (3%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R ARE A+Q L+ ++S+ ++ + L ++ ++ +L+ G + +D L Sbjct: 3 RHEAREKAIQTLFQIEVSKLEVDEAIEFALDGEESD----PFYEQLVTGTLEHIEDIDAL 58 Query: 66 MKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + L L+ LG VE+ +LR+A +EL +P V INEA+ELAKSFG E++ K VN Sbjct: 59 LVENLKNWRLDRLGNVERTILRMATFELLYVETIPENVTINEAVELAKSFGDEEAGKLVN 118 Query: 125 GVLDKAAPV 133 GVL Sbjct: 119 GVLGNIIKE 127 >UniRef50_D1U9R7 NusB antitermination factor n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U9R7_9DELT Length = 151 Score = 140 bits (354), Expect = 1e-32, Method: Composition-based stats. Identities = 48/143 (33%), Positives = 72/143 (50%), Gaps = 7/143 (4%) Query: 2 KPAARRRARECAVQALYSWQL----SQNDIADVEYQF-LAEQDVKDVDVLYFRELLAGVA 56 +P RR R A Q LY + DI + + E+ + + R L+ GV Sbjct: 9 RPGIRRVGRTLAFQVLYGTHFDDPKNPVDIGTAFERNPMVEEQESETAREFARALVLGVD 68 Query: 57 TNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG 115 N A +D + + + + +E ++LR++LYE+ +D+P K AINEAIEL+K FG Sbjct: 69 KNLARIDAAIGEHSQHWKFDRIAVIELSILRLSLYEMLF-TDIPVKAAINEAIELSKLFG 127 Query: 116 AEDSHKFVNGVLDKAAPVIRPNK 138 E S FVNG+LD A + K Sbjct: 128 DEKSRGFVNGILDGVARTMPSGK 150 >UniRef50_Q2YYB7 N utilization substance protein B homolog n=59 Tax=Staphylococcus RepID=NUSB_STAAB Length = 129 Score = 140 bits (354), Expect = 1e-32, Method: Composition-based stats. Identities = 42/129 (32%), Positives = 69/129 (53%), Gaps = 2/129 (1%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 +R+ +R A Q L+ ++ +D+ E + D+D + L++GV + LD Sbjct: 2 SRKESRVQAFQTLFQLEMKDSDLTINEAISFIKDGNPDLDFEFIHWLVSGVKDHEPVLDE 61 Query: 65 LMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 + PYL + L + ++ +LR+A YE+ SD P KV +NEA+EL K F +D +KF+ Sbjct: 62 TISPYLKDWTIARLLKTDRIILRMATYEILH-SDTPAKVVMNEAVELTKQFSDDDHYKFI 120 Query: 124 NGVLDKAAP 132 NGVL Sbjct: 121 NGVLSNIKK 129 >UniRef50_C8PMR7 Transcription antitermination factor NusB n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PMR7_9SPIO Length = 147 Score = 140 bits (353), Expect = 2e-32, Method: Composition-based stats. Identities = 45/133 (33%), Positives = 66/133 (49%), Gaps = 4/133 (3%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAE---QDVKDVDVLYFRELLAGVATNTAY 61 RRR R A QALY+W D+ E +++ D D L+ + L G + Sbjct: 4 GRRRGRILAFQALYAWDAGSLSPDDLLPFPWVERTGKELHDEDFLFSQLLFLGAVEHIDE 63 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +DGL+ L L V+KA+LR+ Y L + D ++ INEA+ +A+ +G +DS Sbjct: 64 IDGLIAKNLENWDFNRLKLVDKAILRLGTYSLLFQQDTDPRIVINEAVTIARIYGTDDSF 123 Query: 121 KFVNGVLDKAAPV 133 KFVN VLD Sbjct: 124 KFVNAVLDSIKRE 136 >UniRef50_UPI0000E87F00 transcription antitermination protein NusB n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87F00 Length = 155 Score = 139 bits (352), Expect = 2e-32, Method: Composition-based stats. Identities = 54/133 (40%), Positives = 79/133 (59%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 RR++RE ++++Y ++Q DI ++ + D D + ++ GV N L Sbjct: 18 RRKSRELVMKSIYRGIVNQFDINQIKKDIREDPDFVRSDESMYLSIVEGVHNNFDSLKEE 77 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 +K YL R +EL +E A+L +LYEL DVPY+V INEAIE+AKSFG D KF+NG Sbjct: 78 IKTYLDRSYDELSPIELAILFSSLYELKFSLDVPYRVVINEAIEVAKSFGGVDGFKFING 137 Query: 126 VLDKAAPVIRPNK 138 +L+KAA R N+ Sbjct: 138 ILNKAAQHNRKNE 150 >UniRef50_Q1MS16 N utilization substance protein B homolog n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=NUSB_LAWIP Length = 161 Score = 139 bits (352), Expect = 2e-32, Method: Composition-based stats. Identities = 51/150 (34%), Positives = 76/150 (50%), Gaps = 13/150 (8%) Query: 2 KPAARRRARECAVQALYSWQLSQ-NDIADVEYQFLAEQDVK-----------DVDVLYFR 49 K +RR R A Q LYS +Q N I ++ FL + D + + Sbjct: 5 KKHSRRIDRTKAFQVLYSLHFTQINTIETLKEIFLNLPNPLEERNTGIITELDTQISFSW 64 Query: 50 ELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAI 108 +L+ GV N LD ++ + ++ LG++E +LRIA +E+ DVP KV++NEA+ Sbjct: 65 QLVEGVWRNVTRLDKIISQFSQNWRVDRLGKIELTLLRIATFEMYYCPDVPPKVSLNEAL 124 Query: 109 ELAKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 ELA FG E + KF+NG+LD I K Sbjct: 125 ELATCFGDEKARKFINGILDAIIKAIETEK 154 >UniRef50_B8DJF1 N utilization substance protein B homolog n=2 Tax=Desulfovibrio RepID=NUSB_DESVM Length = 165 Score = 139 bits (352), Expect = 2e-32, Method: Composition-based stats. Identities = 50/154 (32%), Positives = 71/154 (46%), Gaps = 17/154 (11%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIA----------------DVEYQFLAEQDVKDVDV 45 K RR R A Q LY + + E + Q Sbjct: 6 KKPTRRSERALAFQVLYGLSFTPATSEGALRAAYAASPDVADRNAEDEKADRQAPATAPQ 65 Query: 46 LYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAI 104 Y E++ GV A LD + + +E +G+VE +LRIA+YE+ R DVP KVA+ Sbjct: 66 GYAWEVIHGVWKTQAELDEAVSGFSQNWRVERMGRVELTLLRIAVYEMLFRDDVPAKVAM 125 Query: 105 NEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 NEAIEL+K FG ++S F+NG+LD A + + Sbjct: 126 NEAIELSKQFGDDNSRGFINGILDAVARAVESGR 159 >UniRef50_C5S6Y6 NusB antitermination factor n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S6Y6_CHRVI Length = 171 Score = 139 bits (352), Expect = 2e-32, Method: Composition-based stats. Identities = 50/153 (32%), Positives = 78/153 (50%), Gaps = 22/153 (14%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAE----------------------QDV 40 + R ++R A ALY W+L+ +D ++ L + +D Sbjct: 10 ISPRSQSRRYAALALYQWRLTGDDPMAIKRHLLDDPKWLDAVAASLNGVSDEDELAAEDR 69 Query: 41 KDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPY 100 + +V ELL GV T+ +D + +L R + ++ VE A+LR+ YE+ ++P Sbjct: 70 FNFNVELLDELLNGVPTHIDAIDAQLDRFLDRPISQVDPVELAILRLGAYEILFSDNIPD 129 Query: 101 KVAINEAIELAKSFGAEDSHKFVNGVLDKAAPV 133 +VAINEA+EL K GA + HK+VNGVLDK A Sbjct: 130 RVAINEAVELTKLLGAHEGHKYVNGVLDKIARR 162 >UniRef50_B9L730 Transcription antitermination factor NusB n=2 Tax=Nautiliaceae RepID=B9L730_NAUPA Length = 136 Score = 139 bits (352), Expect = 2e-32, Method: Composition-based stats. Identities = 41/136 (30%), Positives = 79/136 (58%), Gaps = 2/136 (1%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 A ARE +Q LY+ ++ + + + L ++ VK + ++LL GV+ + +D Sbjct: 2 ATITHAREAVIQTLYAQEMGNDQAIEQFDEILKDKKVKGSKAEFAKKLLKGVSEHIDKID 61 Query: 64 GLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++K +L E L +V+K +LR+ +YE+ +D PY++ I+EA+++AK+F + + F Sbjct: 62 EIIKNHLIDWDFERLDKVDKQILRVGIYEILY-TDTPYQIVIDEAVKIAKNFSEDKAKSF 120 Query: 123 VNGVLDKAAPVIRPNK 138 +NG+LD+ A N+ Sbjct: 121 INGILDRVAKEKMSNE 136 >UniRef50_Q3ATI5 N utilization substance protein B homolog n=9 Tax=Chlorobiaceae RepID=NUSB_CHLCH Length = 169 Score = 139 bits (352), Expect = 2e-32, Method: Composition-based stats. Identities = 45/142 (31%), Positives = 75/142 (52%), Gaps = 4/142 (2%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDV-LYFRELLAGVATNT 59 MK RR+ RE +QALY+ +L + + L E+ + D + +F LL+ + + Sbjct: 1 MKTY-RRQIREKILQALYTVELRGITLDEAAGWLLTEEILADPNAMKFFNLLLSSIKAHR 59 Query: 60 AYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF-GAE 117 +D + + + ++K ++R+AL E+ D+P KV+INEAIE+AK F + Sbjct: 60 EEIDNYIAQQTFNWDMSRIAIIDKNIIRMALTEILYCEDIPPKVSINEAIEIAKKFNSTD 119 Query: 118 DSHKFVNGVLDKAAPVIRPNKK 139 S KFVNG+LD ++ K Sbjct: 120 KSSKFVNGILDAIFNKLKTEGK 141 >UniRef50_Q0TPD3 N utilization substance protein B homolog n=10 Tax=Clostridium RepID=NUSB_CLOP1 Length = 135 Score = 139 bits (351), Expect = 3e-32, Method: Composition-based stats. Identities = 45/132 (34%), Positives = 71/132 (53%), Gaps = 3/132 (2%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDV--KDVDVLYFRELLAGVATNTAYLD 63 R ++RE +Q Y +++ + F+ +D+ D+D+ Y + L G+ N LD Sbjct: 3 RVKSREYLLQLAYQMEITSETALETFNSFMENEDISKDDLDLAYIKSGLLGIEENKEKLD 62 Query: 64 GLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 L++ L L + +V ++LRI+ YE+ DVP KV+INEAIEL K + S F Sbjct: 63 SLIESQLVKWKLNRISKVNLSILRISTYEILFAEDVPGKVSINEAIELCKKYSDNKSVSF 122 Query: 123 VNGVLDKAAPVI 134 +NGVLDK + Sbjct: 123 INGVLDKVYKNM 134 >UniRef50_Q03RR0 N utilization substance protein B homolog n=23 Tax=Lactobacillus RepID=NUSB_LACBA Length = 142 Score = 139 bits (351), Expect = 3e-32, Method: Composition-based stats. Identities = 44/129 (34%), Positives = 67/129 (51%), Gaps = 4/129 (3%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKD--VDVLYFRELLAGVATNTA 60 R + RE A Q L++ + D YQ + D Y L+ GV + + Sbjct: 2 TLTRHQIRERAFQMLFALNANPEADHDALYQRVLTDDPNQLVPVPDYLATLVNGVLAHQS 61 Query: 61 YLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 LD + YLS L+ + + + +LR+A YE+ DVP +VA+NEA+ELAK+F + Sbjct: 62 ELDAQIDQYLSTGWQLKRIAKTDLVILRMAFYEIEHVDDVPNRVAVNEALELAKNFSDDR 121 Query: 119 SHKFVNGVL 127 S +F+NGVL Sbjct: 122 SRRFINGVL 130 >UniRef50_B0K9D9 N utilization substance protein B homolog n=10 Tax=Thermoanaerobacterales RepID=NUSB_THEP3 Length = 140 Score = 139 bits (351), Expect = 3e-32, Method: Composition-based stats. Identities = 37/129 (28%), Positives = 67/129 (51%), Gaps = 3/129 (2%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R ARE V+ LY + +S+ I+ + F E+D + Y + G + +D Sbjct: 3 RTEAREWVVKMLYQYDVSRLPISKILENFYKEKDPGEQ-KEYIENTVIGAIEHLEEIDKE 61 Query: 66 MKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 ++ Y L + +++ A+LR ++YE+ ++P ++INEA+E+AK + EDS F+N Sbjct: 62 IERYSQNWALNRMPKIDLAILRCSIYEMQY-GNIPVNISINEAVEIAKKYSTEDSPAFIN 120 Query: 125 GVLDKAAPV 133 G+L Sbjct: 121 GLLGAFVRD 129 >UniRef50_A8VXB3 Acetyl-CoA carboxylase, biotin carboxyl carrier protein n=2 Tax=Bacillus RepID=A8VXB3_9BACI Length = 134 Score = 139 bits (350), Expect = 3e-32, Method: Composition-based stats. Identities = 52/134 (38%), Positives = 74/134 (55%), Gaps = 5/134 (3%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 RR AR A+QALY +++ + + L E + D Y L+ V LD Sbjct: 3 RRVARIKAIQALYQVEMTGVNPEEAIKTVLEENESMDP---YLLTLVERVLEEMDELDIK 59 Query: 66 MKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF-GAEDSHKFV 123 ++ + L L +V++A++RIA+YE+ DVP VAINEAI+LA+ F G E+S KFV Sbjct: 60 IQDSMDNWQLSRLARVDRAIMRIAMYEMIHSDDVPVSVAINEAIDLARGFSGDEESGKFV 119 Query: 124 NGVLDKAAPVIRPN 137 NGVL AA + N Sbjct: 120 NGVLSNAAKKLEVN 133 >UniRef50_UPI00019779AE transcription antitermination protein NusB n=1 Tax=Helicobacter cinaedi CCUG 18818 RepID=UPI00019779AE Length = 165 Score = 139 bits (350), Expect = 4e-32, Method: Composition-based stats. Identities = 53/138 (38%), Positives = 73/138 (52%), Gaps = 3/138 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 A R +ARE + LY++ L DI D+ E+ +K+ + LL G TN +D Sbjct: 2 ATRTQAREAVIGMLYAYDLGNKDILDIARSMFEEKKIKNKQQDFAFLLLQGAITNLQSID 61 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED-SHK 121 + PYL LG +EKAVLR+ YE+ +D V INEAIEL K +G ED + + Sbjct: 62 EAIIPYLKEWDFSRLGGMEKAVLRLGAYEILY-TDTDSPVVINEAIELGKMYGGEDNTPR 120 Query: 122 FVNGVLDKAAPVIRPNKK 139 F+NGVLD + R K Sbjct: 121 FLNGVLDALSKAHRQMSK 138 >UniRef50_B9XNZ3 NusB antitermination factor n=1 Tax=bacterium Ellin514 RepID=B9XNZ3_9BACT Length = 185 Score = 139 bits (350), Expect = 4e-32, Method: Composition-based stats. Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 27/162 (16%) Query: 4 AARRRARECAVQALYSWQLSQ-NDIADVEYQFLAEQDV---------------------- 40 RR ARE AVQ L+ L+ + + F Q Sbjct: 21 GKRREARERAVQFLFQHDLNPPEKLEEALNHFWDSQRPAALAEDKGGATWGQKVELPAPT 80 Query: 41 --KDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSD 97 + ++ L+ G + D +K Y L + V++ +LR+A++E+ R D Sbjct: 81 AEEAAVRIFADPLIRGALEHRDEADAQIKKYAENWDLHRIAAVDRNILRLAIFEMLHRED 140 Query: 98 VPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA-APVIRPNK 138 +P V+INEA+++AK F +S KFVNG+LDK ++RP + Sbjct: 141 IPPVVSINEAVDIAKKFSTYESGKFVNGILDKIKGELMRPAR 182 >UniRef50_A4TBX3 N utilization substance protein B homolog n=18 Tax=Actinomycetales RepID=NUSB_MYCGI Length = 164 Score = 139 bits (350), Expect = 4e-32, Method: Composition-based stats. Identities = 47/131 (35%), Positives = 71/131 (54%), Gaps = 5/131 (3%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEY--QFLAEQDVKDVDV--LYFRELLAGVATNTA 60 R +AR+ AV L+ + A+V LA+ D+ Y + GV + A Sbjct: 9 GRHQARKRAVDLLFEAEARGITAAEVAEARNALADNGADDIAPLNPYTVTVARGVTDHAA 68 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 ++D L+ +L L+ L V++AVLR+A++EL DVP VA++EA+ELAK +DS Sbjct: 69 HIDDLISAHLQGWTLDRLPAVDRAVLRVAVWELLHAVDVPEPVAVDEAVELAKQLSTDDS 128 Query: 120 HKFVNGVLDKA 130 FVNGVL + Sbjct: 129 PGFVNGVLGQV 139 >UniRef50_B2KE32 N utilization substance protein B homolog n=1 Tax=Elusimicrobium minutum Pei191 RepID=NUSB_ELUMP Length = 140 Score = 137 bits (347), Expect = 7e-32, Method: Composition-based stats. Identities = 43/139 (30%), Positives = 70/139 (50%), Gaps = 4/139 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADV-EYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 RR ARE A+Q LY + D+ EY+ + + + ++ G + A L Sbjct: 2 GNRRLAREHALQTLYYADTGKTQGKDINEYKEDFKDSLDAAGFEFCSGIIDGALEHQAEL 61 Query: 63 DGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSD-VPYKVAINEAIELAKSFGAEDSH 120 D ++ Y L + V++++LR+A YE+ + P I+EAIELAK F E+S Sbjct: 62 DKIISAYAKNWSLNRMSVVDRSILRMAAYEMLFSPENTPVAAVIDEAIELAKKFSTENSS 121 Query: 121 KFVNGVLDKAAPVIRPNKK 139 +F+NG+LD+ R N + Sbjct: 122 RFINGLLDQIKKE-RKNGQ 139 >UniRef50_B7DR17 NusB antitermination factor n=1 Tax=Alicyclobacillus acidocaldarius LAA1 RepID=B7DR17_9BACL Length = 165 Score = 137 bits (345), Expect = 2e-31, Method: Composition-based stats. Identities = 50/138 (36%), Positives = 76/138 (55%), Gaps = 3/138 (2%) Query: 5 ARRRARECAVQALYSWQL-SQNDIADVEYQFLAEQDVK-DVDVLYFRELLAGVATNTAYL 62 R ARECA+QAL + A+ LAE+ + D Y EL+ G + + Sbjct: 2 TRHEARECALQALCVLDVQRDLGSAEAIASVLAERGLDAGGDWAYIEELVDGTRRHLGEI 61 Query: 63 DGLMKPYLSRLL-EELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D L+ ++ R E +G+VE+ VLR+A YEL ++P AI+EA+++AK+F E S + Sbjct: 62 DELLARHMERWSPERIGRVERNVLRLATYELLFEPELPIASAIDEAVQIAKTFATEQSGR 121 Query: 122 FVNGVLDKAAPVIRPNKK 139 FVNGVL K P + ++ Sbjct: 122 FVNGVLAKLLPAVADRRR 139 >UniRef50_B8ZUK7 N utilization substance protein B homolog n=16 Tax=Actinomycetales RepID=NUSB_MYCLB Length = 190 Score = 136 bits (344), Expect = 2e-31, Method: Composition-based stats. Identities = 43/131 (32%), Positives = 71/131 (54%), Gaps = 6/131 (4%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVL----YFRELLAGVATNTA 60 R +AR+ AV L+ + ++ + + +DV Y + GV+ +TA Sbjct: 7 GRHQARKRAVDLLFEAEARDLSPLEII-EVRSALAKSKLDVAPLHPYTVVVAQGVSEHTA 65 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D L+ +L L+ L V++A+LR++++EL DVP VA++EA+ELAK +DS Sbjct: 66 RIDELIISHLQGWKLDRLPAVDRAILRVSIWELLYADDVPEPVAVDEAVELAKELSTDDS 125 Query: 120 HKFVNGVLDKA 130 FVNG+L K Sbjct: 126 PGFVNGLLGKV 136 >UniRef50_B0REX0 N utilization substance protein B homolog n=4 Tax=Actinobacteria (class) RepID=NUSB_CLAMS Length = 137 Score = 136 bits (343), Expect = 2e-31, Method: Composition-based stats. Identities = 43/134 (32%), Positives = 71/134 (52%), Gaps = 4/134 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIAD---VEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 +AR +AR+ A+ LY + I VE Q A + + Y RE+ G + Sbjct: 2 SARTKARKRALDVLYVADIRGESIPATLAVEQQRAAAEPDRQASWAYAREIAEGFVEHQD 61 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D L++ Y L + V++A+LRI ++E+ +DVP VAI+E+++LA S ++S Sbjct: 62 EIDELIETYSVNWTLARMPAVDRAILRIGIWEILFNADVPDGVAISESVDLASSLSTDES 121 Query: 120 HKFVNGVLDKAAPV 133 FVNG+L + A Sbjct: 122 ASFVNGMLARIAAA 135 >UniRef50_Q3AAM1 N utilization substance protein B homolog n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=NUSB_CARHZ Length = 144 Score = 136 bits (343), Expect = 2e-31, Method: Composition-based stats. Identities = 47/135 (34%), Positives = 73/135 (54%), Gaps = 6/135 (4%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVK-----DVDVLYFRELLAGVATNTA 60 R ARE A +AL+ + D AE+ + + V + REL+ GV Sbjct: 3 RHTARELAFKALFGLDFAPEKTLDTLESLWAEKIAEGKIPPEKLVDFSRELVRGVIEKKE 62 Query: 61 YLDGLMKP-YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 LD +++ + + L +V+K +LR+ALYE+ R D+ V+I+EA+ELAK +G E+S Sbjct: 63 RLDEIIRRRAIGWDFKRLAKVDKTLLRLALYEMLYRPDIDIPVSIDEAVELAKVYGEEES 122 Query: 120 HKFVNGVLDKAAPVI 134 KF+NG+L A I Sbjct: 123 PKFINGILGYVAEHI 137 >UniRef50_D2RJI2 NusB antitermination factor n=2 Tax=Acidaminococcus RepID=D2RJI2_ACIFE Length = 139 Score = 135 bits (342), Expect = 3e-31, Method: Composition-based stats. Identities = 45/135 (33%), Positives = 74/135 (54%), Gaps = 6/135 (4%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQ----DVKDVDVLYFRELLAGVATNTA 60 +RR AR A+++L++ + S + + +AE+ D + D+ Y +L+ GV N Sbjct: 2 SRRDARTIAMRSLFALEFSPEQSPEETVRTMAEEEDIQDTRKKDLAYALDLVKGVRENQE 61 Query: 61 YLDGLMKPY-LSRLLEELGQVEKAVLRIALYELSKRSD-VPYKVAINEAIELAKSFGAED 118 LDG + L+ + +++ +LRIA YE+ + VP VAINEA+ELAK +G +D Sbjct: 62 ALDGELNGLDAKWTLKRMNGIDRNLLRIAGYEMFCSPEPVPPAVAINEAVELAKVYGGDD 121 Query: 119 SHKFVNGVLDKAAPV 133 S F+NG+L Sbjct: 122 SPAFINGLLGSLVKK 136 >UniRef50_B2A534 N utilization substance protein B homolog n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=NUSB_NATTJ Length = 139 Score = 135 bits (342), Expect = 3e-31, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 79/138 (57%), Gaps = 4/138 (2%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFL---AEQDVKDVDVLYFRELLAGVATNTAY 61 +RR ARE +++ ++ + + + +V + + A++++ + Y +++ +N Sbjct: 2 SRRTAREASMKLVFQMAFNDDHVDEVGAEDILAQAKEELNYNNYQYIETVVSRTESNLQK 61 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D ++ + ++ L +V+ ++LR+A+ E+ D+P +V+INEA+ELAK F + + Sbjct: 62 IDEYIEKFSENWKIDRLSKVDLSILRLAISEILFFDDIPTRVSINEAVELAKKFSTDKAS 121 Query: 121 KFVNGVLDKAAPVIRPNK 138 ++NG+LD+ A + + Sbjct: 122 GYINGILDQVANQLNKAR 139 >UniRef50_A5EVR1 Transcription antitermination factor NusB n=2 Tax=Cardiobacteriaceae RepID=A5EVR1_DICNV Length = 145 Score = 135 bits (342), Expect = 4e-31, Method: Composition-based stats. Identities = 53/130 (40%), Positives = 76/130 (58%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R +AR +Q LY WQ+ +D V+ + + ++D YF A + TNT LD Sbjct: 14 RSQARRQLLQGLYQWQIIGDDAEIVKENQMIDARAGEIDHDYFDAAWAYITTNTEQLDCC 73 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 ++ R + L VE A+L I +YEL++R D+ V INEA+ELAK FG++D +KFVNG Sbjct: 74 AADFIRRNMATLDPVEHAILWIGIYELTQRIDIHQNVIINEAVELAKQFGSDDGYKFVNG 133 Query: 126 VLDKAAPVIR 135 VLD+ A R Sbjct: 134 VLDQCAKRHR 143 >UniRef50_D0LW51 NusB antitermination factor n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LW51_HALO1 Length = 150 Score = 135 bits (341), Expect = 4e-31, Method: Composition-based stats. Identities = 47/141 (33%), Positives = 75/141 (53%), Gaps = 4/141 (2%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIAD---VEYQFLAEQDVKDVDVLYFRELLAGVAT 57 MK ARRRAR A+Q LY+ L+ + +EY + + + + R L+ V Sbjct: 1 MKVGARRRARSYALQVLYALDLNPLEEPTRALLEYAGRFDLRIDEEAGDFARSLIEQVYP 60 Query: 58 NTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 + +D ++ +E + +V++ VLR+A+ ELS+ +V INEA+ELAK FG Sbjct: 61 HLERIDERIQTASRNWRIERMSRVDRNVLRLAVGELSQPDGAAARVVINEAVELAKRFGT 120 Query: 117 EDSHKFVNGVLDKAAPVIRPN 137 +S FVNG+LD+ R + Sbjct: 121 TESPAFVNGILDRVDQHKRDD 141 >UniRef50_C8WXH1 NusB antitermination factor n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WXH1_ALIAD Length = 166 Score = 135 bits (341), Expect = 4e-31, Method: Composition-based stats. Identities = 51/138 (36%), Positives = 75/138 (54%), Gaps = 3/138 (2%) Query: 5 ARRRARECAVQALYSWQL-SQNDIADVEYQFLAEQDVK-DVDVLYFRELLAGVATNTAYL 62 R ARECA+QAL + A+ LAE+ D Y EL+ G + + Sbjct: 2 TRHEARECALQALCVLDVQRDLGSAEAIASALAERGTDAGGDFTYIEELVDGTRRHLDEI 61 Query: 63 DGLMKPYLSRLL-EELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D L+ ++ R E +G+VE+ VLR+A YEL ++P AI+EA+E+AK+F E S + Sbjct: 62 DELLARHMERWSPERIGRVERNVLRLATYELLFEPELPIASAIDEAVEIAKTFATEQSGR 121 Query: 122 FVNGVLDKAAPVIRPNKK 139 FVNGVL K P + ++ Sbjct: 122 FVNGVLAKLLPAVADRRR 139 >UniRef50_UPI00016C04B6 transcription termination factor n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C04B6 Length = 135 Score = 135 bits (341), Expect = 4e-31, Method: Composition-based stats. Identities = 44/136 (32%), Positives = 70/136 (51%), Gaps = 6/136 (4%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQ--DVKDVDVLYFRELLAGVATNTAYL 62 RR+AR C VQ LY+ + + L E D+K + E G+ N + Sbjct: 2 TRRQARICVVQMLYNLSFHD---KEQAQEILNENLLDIKGKVKTFISETFEGIVDNMDAI 58 Query: 63 DGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D ++ L L + +V+ +LR+A+YE++ D+P KVAINEA+E+A+ + E S K Sbjct: 59 DTEIEANLVDWNLSRIAKVDLMILRLAVYEINYAKDLPPKVAINEAVEIAQEYSTEKSGK 118 Query: 122 FVNGVLDKAAPVIRPN 137 F+NG+L + N Sbjct: 119 FINGILGNMNKKVSSN 134 >UniRef50_B1W456 N utilization substance protein B homolog n=7 Tax=Streptomyces RepID=NUSB_STRGG Length = 143 Score = 135 bits (341), Expect = 4e-31, Method: Composition-based stats. Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 5/140 (3%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDV---LYFRELLAGVATNTA 60 AAR +AR+ A Q L+ + V ++ D + EL+ G A Sbjct: 2 AARNKARKRAFQILFEADQRGESVQSVLADWVRLSRTDDRQPPVGEFTMELVEGYAQYAD 61 Query: 61 YLDGLMKPY-LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D L+ Y + ++ + V++++LR+ YEL P V I+EA++LAK F +DS Sbjct: 62 RIDDLIVTYAVDWEIDRMPVVDRSILRLGAYELIWMDGTPDAVVIDEAVQLAKEFSTDDS 121 Query: 120 HKFVNGVLDKAAPVIRPNKK 139 FVNG+L + ++PN + Sbjct: 122 PSFVNGLLARF-KDLKPNLR 140 >UniRef50_A6LU43 N utilization substance protein B homolog n=6 Tax=Clostridium RepID=NUSB_CLOB8 Length = 133 Score = 135 bits (340), Expect = 5e-31, Method: Composition-based stats. Identities = 47/131 (35%), Positives = 78/131 (59%), Gaps = 3/131 (2%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLA--EQDVKDVDVLYFRELLAGVATNTAYLD 63 R+ +RE A++ L+ LS++ + D F+ E D+K++D+ Y +++L GV N +D Sbjct: 3 RKLSREKAMELLFGMTLSKDTMEDAVEAFVENYEGDIKEIDLTYVKQVLIGVNNNKEAID 62 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 +++ L +E + +V ++LRIA YEL +VP VAINEA+E+ + + E S F Sbjct: 63 KVIQENLHNWKIERISKVNLSILRIATYELLYDKEVPRGVAINEALEITRRYSDEKSVSF 122 Query: 123 VNGVLDKAAPV 133 +NGVLDK Sbjct: 123 INGVLDKIKQD 133 >UniRef50_D0MK26 NusB antitermination factor n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MK26_RHOM4 Length = 165 Score = 135 bits (340), Expect = 5e-31, Method: Composition-based stats. Identities = 42/137 (30%), Positives = 70/137 (51%), Gaps = 2/137 (1%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDV-LYFRELLAGVATNTAYLD 63 +RR RE +QALY++++ + V L D + + +L + D Sbjct: 3 SRREVRERVLQALYAYEVGHDTAEHVIDTVLRPALKDDREALRFATQLFLRTINYSEEAD 62 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 L+ ++ L + +++ +LR+A+ EL D+P KV+INEAIELAK + E S +F Sbjct: 63 RLIADHVKNWDLTRIALIDRLLLRMAICELLAFEDIPPKVSINEAIELAKKYSTEKSGQF 122 Query: 123 VNGVLDKAAPVIRPNKK 139 VNGVLD ++ + Sbjct: 123 VNGVLDAVVLDLQRQGR 139 >UniRef50_C4XHY8 N utilization substance protein B homolog n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XHY8_DESMR Length = 159 Score = 135 bits (340), Expect = 5e-31, Method: Composition-based stats. Identities = 40/141 (28%), Positives = 70/141 (49%), Gaps = 7/141 (4%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAE------QDVKDVDVLYFRELLAGVATN 58 +RR+AR+ A + LY + + D + EL+ GV N Sbjct: 12 SRRKARKQAFEFLYGLSFEPAADERSLLRLFKRCPHDVAEGEDDAGHEFAWELVLGVWRN 71 Query: 59 TAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 +D + + + + +VE +LR+A++E+ R D+P +V++NEAIEL+K +G E Sbjct: 72 QRDIDATIVRFSKNWKISRIAKVELTILRLAVHEILSRPDIPLRVSLNEAIELSKRYGDE 131 Query: 118 DSHKFVNGVLDKAAPVIRPNK 138 +S F+NG+LD A + + Sbjct: 132 NSRNFINGILDALAKAVDSGE 152 >UniRef50_Q7USA9 N utilization substance protein B homolog n=2 Tax=Planctomycetaceae RepID=NUSB_RHOBA Length = 145 Score = 135 bits (340), Expect = 5e-31, Method: Composition-based stats. Identities = 43/133 (32%), Positives = 66/133 (49%), Gaps = 3/133 (2%) Query: 2 KPAARRRARECAVQALYSWQLSQ-NDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 + + RRRARE +Q LY L+ D A + + V + ELL G Sbjct: 4 RMSTRRRAREIVLQLLYEADLNDWRDAATSRKFIRSRLQGRKVLTDFAAELLDGTMARRD 63 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D + + L + ++ VLR+ YE+ S P +VAI+EA+ LAK +G E+S Sbjct: 64 DIDAKLTKLSTNWALHRMPVTDRNVLRLGAYEILY-SGTPGQVAISEALTLAKRYGGENS 122 Query: 120 HKFVNGVLDKAAP 132 +F+NGVLD+ Sbjct: 123 PRFINGVLDRLFK 135 >UniRef50_A0JX79 N utilization substance protein B homolog n=3 Tax=Actinomycetales RepID=NUSB_ARTS2 Length = 136 Score = 135 bits (340), Expect = 5e-31, Method: Composition-based stats. Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 4/134 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +AR +AR A+ L+ + DV + D + Y E++ GV ++ A +D Sbjct: 2 SARGKARNRALDVLFEAEQRSLSAFDVLRSRREKTD--QIVNPYTLEIVEGVVSHQAAID 59 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ Y LE + V++ +LRI +EL DVP VA++EA+ LAK+ ++S F Sbjct: 60 EFLETYSQGWTLERMPSVDRIILRIGTWELLYNDDVPDGVAVSEAVALAKTLSTDESPSF 119 Query: 123 VNGVLDKAAPVIRP 136 +NG+L + ++P Sbjct: 120 INGLLGRL-QQLKP 132 >UniRef50_B3DQ30 N utilization substance protein B homolog n=7 Tax=Actinobacteridae RepID=NUSB_BIFLD Length = 190 Score = 135 bits (340), Expect = 6e-31, Method: Composition-based stats. Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 1/127 (0%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 AR AR+ A+ LY DI + + +A + Y E++ GVA + +D Sbjct: 2 ARSTARKRALNTLYEADEKSQDILSLLDERIAHPGAQTPLPDYAIEIVKGVAEHRRQIDM 61 Query: 65 LMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 + + + + +G V++ +LRIA +E+ DVP KVAI+EA+ LAK+ +DS F+ Sbjct: 62 TLDEHSTGWKVRRMGVVDRNILRIAAWEILFTDDVPDKVAIDEALALAKTLCDDDSPAFI 121 Query: 124 NGVLDKA 130 +G+L Sbjct: 122 HGLLSAV 128 >UniRef50_C9RN69 NusB antitermination factor n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RN69_FIBSS Length = 146 Score = 134 bits (338), Expect = 9e-31, Method: Composition-based stats. Identities = 42/128 (32%), Positives = 70/128 (54%), Gaps = 1/128 (0%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 M + R AR A+Q LY+ ++S +AD L Q ++D Y +L+ V + A Sbjct: 1 MAQVSFRPARVFAMQLLYAMEISGGTVADALPGVLEAQPLQDNMKKYGMKLVDLVLAHKA 60 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 LD ++ + +E + +++ VLRIA+ EL ++P KV I+EA+++A F + S Sbjct: 61 ELDSEIEACSAHWGIERMATLDRIVLRIAMVELLYVPEIPMKVVISEAVQVAAKFSTDSS 120 Query: 120 HKFVNGVL 127 FVNG+L Sbjct: 121 GTFVNGLL 128 >UniRef50_C1QBG1 Transcription antitermination factor NusB n=1 Tax=Brachyspira murdochii DSM 12563 RepID=C1QBG1_9SPIR Length = 187 Score = 134 bits (337), Expect = 1e-30, Method: Composition-based stats. Identities = 43/129 (33%), Positives = 79/129 (61%), Gaps = 2/129 (1%) Query: 4 AARRRARECAVQALYSWQLSQNDIA-DVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 ARR+AR AV +LYS+++++ I+ + F ++ + + + R L+ G N + Sbjct: 53 GARRQARIYAVMSLYSYEINERKISINNILDFDYDKKIPENIFAFTRNLVEGTIKNLERI 112 Query: 63 DGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D L++ Y + ++ + V+K+++R+++Y L D+P V I+EA+E+AK F +DS+K Sbjct: 113 DSLIEKYSNNWDIKRIQYVDKSIIRMSIYSLIFLKDIPKSVVIDEAVEIAKIFSDKDSYK 172 Query: 122 FVNGVLDKA 130 FVNG+LD Sbjct: 173 FVNGILDGI 181 >UniRef50_Q0F2C5 Transcription antitermination protein NusB n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F2C5_9PROT Length = 145 Score = 134 bits (337), Expect = 1e-30, Method: Composition-based stats. Identities = 51/139 (36%), Positives = 81/139 (58%), Gaps = 4/139 (2%) Query: 4 AARRRARECAVQALYSWQLSQND---IADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 A R +ARE ++ LY+W +Q D I ++ L ++ D D Y RE + G+ +T Sbjct: 2 ANRHQARESVLETLYAWSSAQQDSGMIPELLASRLQHEERADQDESYLREAVYGITDHTD 61 Query: 61 YLDGLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 LD L+K + R L + Q+E V+R+A++E+ R ++PY+V INEA+EL + + E Sbjct: 62 ALDELIKTAVRGRSLRSVAQIEINVIRLAVWEMQNRLEIPYRVIINEALELTRDYAGEPP 121 Query: 120 HKFVNGVLDKAAPVIRPNK 138 F+NGVLD A +RP + Sbjct: 122 RGFINGVLDNLAKQLRPAE 140 >UniRef50_C8PUW0 NusB antitermination factor n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PUW0_9GAMM Length = 186 Score = 133 bits (336), Expect = 1e-30, Method: Composition-based stats. Identities = 47/129 (36%), Positives = 73/129 (56%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLM 66 R+AR VQ LY W L+ N ++E +E + V + Y+ ELL+ + + L + Sbjct: 29 RKARRFVVQGLYEWLLTGNPSHEIEAHTRSENAMHTVHLGYYHELLSKIIEQSDDLIAYI 88 Query: 67 KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGV 126 L+R L +VE+AVL + YE+ + +VPYKV I+EAI+L FG+ D +K ++ V Sbjct: 89 DSLLNRPWTRLDKVEQAVLLVGAYEMKQHLEVPYKVVIDEAIQLNTHFGSSDGYKMIHVV 148 Query: 127 LDKAAPVIR 135 +DK A R Sbjct: 149 MDKIAKDAR 157 >UniRef50_B8DTW1 N utilization substance protein B homolog n=16 Tax=Actinobacteridae RepID=NUSB_BIFA0 Length = 154 Score = 133 bits (336), Expect = 2e-30, Method: Composition-based stats. Identities = 34/130 (26%), Positives = 64/130 (49%), Gaps = 1/130 (0%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 AR AR A+ LY D + + +A+ + Y E++ GV + +D Sbjct: 2 ARSTARRRALNTLYEADEKGQDFLSLLDERIAQPGAQTPLPEYAIEIVRGVDEHRRDIDS 61 Query: 65 LMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 + + + ++ + +++ +LRIA +E+ DVP KVAI+EA+ L+K+ + + F+ Sbjct: 62 QLNTHSTGWKVKRMHAIDRNILRIATWEILYNDDVPDKVAIDEALNLSKTLSDDAAPSFI 121 Query: 124 NGVLDKAAPV 133 +GVL Sbjct: 122 HGVLSAIVAA 131 >UniRef50_Q0ABQ3 N utilization substance protein B homolog n=2 Tax=Ectothiorhodospiraceae RepID=NUSB_ALHEH Length = 178 Score = 133 bits (336), Expect = 2e-30, Method: Composition-based stats. Identities = 54/134 (40%), Positives = 73/134 (54%), Gaps = 17/134 (12%) Query: 18 YSWQLSQNDIADVEYQFLA-----------------EQDVKDVDVLYFRELLAGVATNTA 60 Y WQ++ D+ +E Q L +D YFR LL GV Sbjct: 29 YQWQMTGQDLGAIEAQHLEIDPEEPPVEAGDDEHYPRYPHDGLDRPYFRALLHGVPARLN 88 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD ++P L R L L +EKA+LR+ +ELS+R D P++V INEA+ LAK FGAE SH Sbjct: 89 DLDQALEPLLDRPLRTLDPLEKALLRLGAWELSERMDTPWRVIINEAVNLAKRFGAEQSH 148 Query: 121 KFVNGVLDKAAPVI 134 +++NGVLDK A + Sbjct: 149 RYINGVLDKLARGL 162 >UniRef50_D1KDZ6 Transcription termination factor n=1 Tax=uncultured SUP05 cluster bacterium RepID=D1KDZ6_9GAMM Length = 142 Score = 133 bits (335), Expect = 2e-30, Method: Composition-based stats. Identities = 53/136 (38%), Positives = 82/136 (60%), Gaps = 1/136 (0%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 ++R+RE VQA+Y + +S ++ +E QFL +++ + +F L + N L Sbjct: 4 KTPKQRSRERVVQAVYQYLVSGGEVLQIEQQFLNQKE-GKISKAFFSNLFINILKNRIEL 62 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 D L+ P +SR +ELG VE AVL + +YEL +VPYKV INEA+E+AK +GAE + K Sbjct: 63 DELIAPTISRETDELGSVEHAVLYLGVYELQNSIEVPYKVVINEALEIAKLYGAEGAFKL 122 Query: 123 VNGVLDKAAPVIRPNK 138 +N LD+ A +R + Sbjct: 123 INSSLDQLAKDLRELE 138 >UniRef50_Q136T4 N utilization substance protein B homolog n=36 Tax=Alphaproteobacteria RepID=NUSB_RHOPS Length = 174 Score = 132 bits (334), Expect = 2e-30, Method: Composition-based stats. Identities = 43/147 (29%), Positives = 71/147 (48%), Gaps = 10/147 (6%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQF--------LAEQDVKDVDVLYFRELLA 53 K R AR AVQALY + I D +F + + +FR++++ Sbjct: 25 KANRRGAARLAAVQALYQMDIGGAGIDDTFAEFESHWIGNEVEGDQYLPAEAAFFRDIVS 84 Query: 54 GVATNTAYLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELA 111 GV + LD L+ L+ L + + +AV+R YEL R D+P +V ++E +++A Sbjct: 85 GVVRDQTKLDPLIDEALAKGWPLARIDAIIRAVMRAGAYELEHRKDIPARVVVSEYVDVA 144 Query: 112 KSFGAEDSHKFVNGVLDKAAPVIRPNK 138 +F +D VN VLD+ A R ++ Sbjct: 145 HAFVEKDETGMVNAVLDQIARQFRADE 171 >UniRef50_C1I679 NusB antitermination factor n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I679_9CLOT Length = 134 Score = 132 bits (334), Expect = 3e-30, Method: Composition-based stats. Identities = 49/132 (37%), Positives = 80/132 (60%), Gaps = 3/132 (2%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDV--KDVDVLYFRELLAGVATNTAYLD 63 R+R+RE A++ L+ LS+N + + F+ + ++ K +D+ Y + +LA V N +D Sbjct: 3 RKRSREIAMELLFGMTLSKNTLEETIETFIEDYEMNLKTIDLEYIKGILAKVEENITVID 62 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ L+ ++ + +V ++LR+A+ E+ DVP KVAINEAIEL K + E S F Sbjct: 63 QKIEEALTNWKIDRVSKVNISILRLAIAEMLYVEDVPEKVAINEAIELTKKYSDEKSVSF 122 Query: 123 VNGVLDKAAPVI 134 VNGVLDKA + Sbjct: 123 VNGVLDKAFKSL 134 >UniRef50_B8H535 N utilization substance protein B homolog n=4 Tax=Caulobacteraceae RepID=NUSB_CAUCN Length = 149 Score = 132 bits (334), Expect = 3e-30, Method: Composition-based stats. Identities = 52/140 (37%), Positives = 70/140 (50%), Gaps = 10/140 (7%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQF--------LAEQDVKDVDVLYFRELLAGVAT 57 R AR AVQALY ++S + V +F + + + D +F +L GV T Sbjct: 9 RSVARLAAVQALYQMEVSGAGVDSVIREFGEHRFDRDVEGEQLAAADETFFADLARGVVT 68 Query: 58 NTAYLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG 115 N A +D + L+ LE L +AVLR +EL RSDVP +V INE +E+AKSF Sbjct: 69 NQAKIDQGIVKRLASGWRLERLDATARAVLRAGAFELMYRSDVPTEVVINEYVEIAKSFF 128 Query: 116 AEDSHKFVNGVLDKAAPVIR 135 F+NG LD A R Sbjct: 129 EGPESGFINGALDAIARDAR 148 >UniRef50_A8SLT0 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SLT0_9FIRM Length = 134 Score = 132 bits (334), Expect = 3e-30, Method: Composition-based stats. Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 2/131 (1%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 R ARE ++ +Y + N D F+ D+ +V Y R+ + N +D Sbjct: 2 TRSEAREWCMKLIYQLSIHNNFKCDEIESFIEYFDLPSSEVKYIRKNCKSIIDNLDNIDN 61 Query: 65 LMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++K L + +++ A+LR+A+ E+ D+P VAINEAIE+A + + S+KF Sbjct: 62 IIKENLEGCWNYNRIAKIDLAILRVAVNEIYYLDDIPESVAINEAIEIANKYSTDASYKF 121 Query: 123 VNGVLDKAAPV 133 +NG+L Sbjct: 122 INGILGTIVRA 132 >UniRef50_C9LUP3 Transcription antitermination factor NusB n=2 Tax=Selenomonas RepID=C9LUP3_9FIRM Length = 160 Score = 132 bits (334), Expect = 3e-30, Method: Composition-based stats. Identities = 44/139 (31%), Positives = 69/139 (49%), Gaps = 11/139 (7%) Query: 5 ARRRARECAVQALYSWQLSQ--NDIADVEYQFLAEQDV-------KDVDVLYFRELLAGV 55 +RR+ARE A+Q L+ +L+ ++ Q A D Y L+ G Sbjct: 22 SRRQAREAALQTLFQLELNPPSEAASEEACQMWALDAAVEEMPVETKRDYSYAASLVRGT 81 Query: 56 ATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSK-RSDVPYKVAINEAIELAKS 113 + A +D + L+ + V++ ++RIALYE+ V +AINEA+ELAK Sbjct: 82 REHLAAIDEEIAASTHDWKLDRMTGVDRNIVRIALYEMKYGAEKVDVGIAINEAVELAKK 141 Query: 114 FGAEDSHKFVNGVLDKAAP 132 FG +DS ++VNG+L A Sbjct: 142 FGTDDSSRYVNGILGGLAR 160 >UniRef50_Q983A9 N utilization substance protein B homolog n=3 Tax=Alphaproteobacteria RepID=NUSB_RHILO Length = 155 Score = 132 bits (333), Expect = 3e-30, Method: Composition-based stats. Identities = 46/150 (30%), Positives = 79/150 (52%), Gaps = 11/150 (7%) Query: 1 MKPAARR-RARECAVQALYSWQLSQNDIADVEYQF--------LAEQDVKDVDVLYFREL 51 M+ A +R AR AVQALY ++ + + ++ ++ + ++ D +FR + Sbjct: 1 MRHANKRGAARLAAVQALYQMDVAGSGVFEITAEYEAFRLGKEVDGALYREADAQWFRAI 60 Query: 52 LAGVATNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIE 109 L GV + +D +++ L L L +A+LR +YEL KR DVP V ++E ++ Sbjct: 61 LTGVVEDQKTIDPVIRQALTDDWPLSRLDSTLRAILRAGVYELMKREDVPVAVIVSEYVD 120 Query: 110 LAKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 +AK+F ED K VN VLD+ + +R + Sbjct: 121 IAKAFYEEDEPKLVNAVLDRVSRRVRGEGR 150 >UniRef50_C0R001 Transcription antitermination protein NusB n=1 Tax=Brachyspira hyodysenteriae WA1 RepID=C0R001_BRAHW Length = 181 Score = 132 bits (333), Expect = 3e-30, Method: Composition-based stats. Identities = 42/130 (32%), Positives = 78/130 (60%), Gaps = 4/130 (3%) Query: 4 AARRRARECAVQALYSWQLSQ--NDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 ARR+AR AV +LYS++++ I ++ F ++ + + + R L+ G N Sbjct: 47 GARRQARIYAVMSLYSYEINDRKETINEIL-SFDYDKKIPENIFEFTRTLVEGTINNLER 105 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D L++ Y + ++ + V+K+++R+++Y L D+P V I+EA+E++K F +DS+ Sbjct: 106 IDNLIEKYSNNWDIKRIQYVDKSIIRMSIYSLIFLKDIPKSVVIDEAVEISKIFSDKDSY 165 Query: 121 KFVNGVLDKA 130 KFVNG+LD Sbjct: 166 KFVNGILDGI 175 >UniRef50_B1ZVQ6 NusB antitermination factor n=3 Tax=Verrucomicrobia RepID=B1ZVQ6_OPITP Length = 147 Score = 132 bits (333), Expect = 4e-30, Method: Composition-based stats. Identities = 38/138 (27%), Positives = 75/138 (54%), Gaps = 2/138 (1%) Query: 4 AARRRARECAVQALYSWQLS-QNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 A RR R A+Q L++W ++ ++A+ F + + EL+ GV ++ + Sbjct: 7 AQRRDGRVAALQYLFAWSMNRPRNLAEDLRVFFENMEQPRDHYAFGEELIHGVIEHSDDI 66 Query: 63 DGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D +K + + +++ +LR+A++E+ R D+P V+INEAI+L+K F D+ + Sbjct: 67 DARIKGLAHNWEFDRIAKIDLTILRLAIFEILHRKDIPPVVSINEAIDLSKQFSNADAKR 126 Query: 122 FVNGVLDKAAPVIRPNKK 139 F+NG+LD+ + + + Sbjct: 127 FINGILDRLKDQVGRDAR 144 >UniRef50_C9KK33 Transcription antitermination factor NusB n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KK33_9FIRM Length = 143 Score = 132 bits (333), Expect = 4e-30, Method: Composition-based stats. Identities = 39/139 (28%), Positives = 69/139 (49%), Gaps = 11/139 (7%) Query: 5 ARRRARECAVQALYSWQLSQNDIAD---------VEYQFLAEQDVKDVDVLYFRELLAGV 55 +RR+ARE A+QAL+ L+ + AD ++ + + D + +L+ G Sbjct: 2 SRRQAREVALQALFQLDLNPAESADQEEMQETLAIDTALGEAEAMSAHDRAFVAQLVHGT 61 Query: 56 ATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSK-RSDVPYKVAINEAIELAKS 113 N +D + +E + V++ + R+A YE+ + +AINEA+ELAK Sbjct: 62 RANLEAIDAQIAANSREWKVERMAAVDRNLTRMATYEMCFAEEKLTPNIAINEAVELAKK 121 Query: 114 FGAEDSHKFVNGVLDKAAP 132 +G +DS ++VNG+L Sbjct: 122 YGTDDSSRYVNGILGAIMK 140 >UniRef50_C4FTS3 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FTS3_9FIRM Length = 154 Score = 132 bits (332), Expect = 4e-30, Method: Composition-based stats. Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 10/144 (6%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDV------LYFRELLAGV 55 K + R + RE AVQ ++ Q ++ + A + D + Y L+ GV Sbjct: 10 KMSNRHQVREKAVQTIFQLIRPQVPVSLDQACAFALEAGNDPEAGFEGSDAYLDRLVQGV 69 Query: 56 ATNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSK--RSDVPYKVAINEAIELA 111 LD + YL L+ L +++ A+LR+A YEL +VP KVA+NEA+ELA Sbjct: 70 NQTAEELDQRISHYLAEDWTLDRLARIDLAILRVAFYELLYVSEDEVPSKVAVNEAVELA 129 Query: 112 KSFGAEDSHKFVNGVLDKAAPVIR 135 K+F + S +F+NGVL ++ Sbjct: 130 KTFSDDKSKQFINGVLAGLLKDLK 153 >UniRef50_D2EIA0 Transcription antitermination factor NusB n=1 Tax=Pediococcus acidilactici 7_4 RepID=D2EIA0_PEDAC Length = 134 Score = 132 bits (332), Expect = 5e-30, Method: Composition-based stats. Identities = 40/131 (30%), Positives = 69/131 (52%), Gaps = 4/131 (3%) Query: 6 RRRARECAVQALYSWQLSQN-DIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 R + RE A + +++ ++ + D +++ Q L E DV + L+ GV N + ++ Sbjct: 5 RHQMRESAFKMIFAQSVNPDADPEELKKQVLEEFHETDVADPFLDNLVTGVQENVSSINE 64 Query: 65 LMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + L + L ++ +L+I YE+ ++VP VAINEA+ELAK + E + KF Sbjct: 65 TIGKELKAGWTVNRLANPDRVILQIGTYEIKH-TEVPNNVAINEALELAKKYTDEKARKF 123 Query: 123 VNGVLDKAAPV 133 +NGVL A Sbjct: 124 INGVLSNVAKD 134 >UniRef50_A4W3P3 Transcription termination factor n=6 Tax=Streptococcus suis RepID=A4W3P3_STRS2 Length = 140 Score = 131 bits (331), Expect = 6e-30, Method: Composition-based stats. Identities = 45/138 (32%), Positives = 72/138 (52%), Gaps = 5/138 (3%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVL---YFRELLAGVAT 57 M R R+CA+QA+ S + Q + ++ +L +++ + V + L+ GVA Sbjct: 1 MMKNNRHALRKCALQAIVSLEFGQEPVQAAQFSYLYDREEEQEGVEIPLFLLNLVNGVAD 60 Query: 58 NTAYLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG 115 LD + L L+ L ++K ++R+ L+E+ + P +VA+NEAIELAK F Sbjct: 61 YRDDLDKELSSRLKAGWTLDRLTLIDKNIMRLGLFEILHFEETPDRVAVNEAIELAKEFS 120 Query: 116 AEDSHKFVNGVLDKAAPV 133 E S KFVNGVL + Sbjct: 121 DESSAKFVNGVLSQFIKE 138 >UniRef50_A4XLC1 N utilization substance protein B homolog n=2 Tax=Clostridia RepID=NUSB_CALS8 Length = 142 Score = 131 bits (331), Expect = 7e-30, Method: Composition-based stats. Identities = 44/132 (33%), Positives = 76/132 (57%), Gaps = 6/132 (4%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEY-----QFLAEQDVKDVDVLYFRELLAGVATNTA 60 RR+ RE ++ LY+++ N+ +E+ + +++ K++D Y ++LL GV N Sbjct: 4 RRKTRELCMKILYAYRFQNNEYDIIEFLNKFKELNPDENFKEIDEEYLKKLLTGVIRNQQ 63 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D L++ Y L + VE ++RIA+YEL ++P VAI+EA++L+ FG E + Sbjct: 64 LIDNLIEKYSKDWPLSRIPMVELELMRIAIYELLFEEEIPISVAIDEAVDLSSIFGVEKA 123 Query: 120 HKFVNGVLDKAA 131 FVNG+L A Sbjct: 124 PSFVNGILGSIA 135 >UniRef50_A8MFJ3 N utilization substance protein B homolog n=2 Tax=Alkaliphilus RepID=NUSB_ALKOO Length = 138 Score = 131 bits (330), Expect = 8e-30, Method: Composition-based stats. Identities = 39/130 (30%), Positives = 71/130 (54%), Gaps = 1/130 (0%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 +R+ ARE ++ L+ ++ + L E +++ Y ++L N +D Sbjct: 2 SRKLARELTMKVLFEMHINNDFNIQRVEHHLFEGSIEEQQKEYIHKVLNEAILNLEAIDS 61 Query: 65 LMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 +++ Y + L + V+ A+LR+A E+ D+PY+V+INEAIELAK +G++++ FV Sbjct: 62 IIEEYSTSWKLNRIANVDLAILRLAFSEIIYMKDIPYRVSINEAIELAKIYGSDETPNFV 121 Query: 124 NGVLDKAAPV 133 NG+L K Sbjct: 122 NGILGKYVEQ 131 >UniRef50_C3XMJ2 Transcription termination protein n=1 Tax=Helicobacter winghamensis ATCC BAA-430 RepID=C3XMJ2_9HELI Length = 199 Score = 131 bits (330), Expect = 8e-30, Method: Composition-based stats. Identities = 41/130 (31%), Positives = 68/130 (52%), Gaps = 2/130 (1%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 A R AR Q LY++ + I+ + L+E +K+ + + L GV + +D Sbjct: 2 ATRTHARVAVAQLLYAYGSGNDGISKFVEEILSEHKIKNAQNEFAKTLFNGVLEHLEEVD 61 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 +K + E +G +E+A+LR+ YE+ S + + INEA+E+ K+F E S KF Sbjct: 62 LRIKHQIKNWDFERIGDMERAILRLGAYEIIF-SGMDKAIVINEALEITKNFSNETSTKF 120 Query: 123 VNGVLDKAAP 132 +NG+LD A Sbjct: 121 INGILDGIAK 130 >UniRef50_B0CL95 N utilization substance protein B homolog n=42 Tax=Alphaproteobacteria RepID=NUSB_BRUSI Length = 171 Score = 131 bits (330), Expect = 9e-30, Method: Composition-based stats. Identities = 47/144 (32%), Positives = 71/144 (49%), Gaps = 10/144 (6%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQF--------LAEQDVKDVDVLYFRELLAGVAT 57 R AR A QALY ++ + +V ++ + D D +FR ++AGV Sbjct: 20 RGVARLAAAQALYQMDVAGTGVMEVVAEYEAFRLGKEVDGTQYLDADPQWFRAIVAGVVE 79 Query: 58 NTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG 115 + LD ++ L L L +A+LR +EL R DVP V ++E +++AK+F Sbjct: 80 DQLKLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELKARKDVPTAVIVSEYVDIAKAFY 139 Query: 116 AEDSHKFVNGVLDKAAPVIRPNKK 139 ED K VN VLD+ A VIR + Sbjct: 140 TEDEPKLVNAVLDRLALVIRGESR 163 >UniRef50_C2D814 Putative uncharacterized protein n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D814_9ACTN Length = 239 Score = 131 bits (330), Expect = 9e-30, Method: Composition-based stats. Identities = 44/138 (31%), Positives = 71/138 (51%), Gaps = 7/138 (5%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQ--FLAEQDVKDVDVLYFRELLAGVATNTAY 61 A R AR A+Q ++ + + DV L+E + D + + L G Sbjct: 11 AGRTLARSQALQLMFQAESRNMQVCDVLATNYLLSEGPLDD----FGKRLALGTDELRDK 66 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD L+ ++ L L V++ +LR+ALYE+ K DV V INE++ LAK++G ++S Sbjct: 67 LDALISRVITNWNLNRLLSVDRNILRLALYEMIKVDDVDIAVTINESVNLAKAYGTDESS 126 Query: 121 KFVNGVLDKAAPVIRPNK 138 FVNGVL + A ++ + Sbjct: 127 HFVNGVLGQVARMMENGR 144 >UniRef50_A0LUG6 N utilization substance protein B homolog n=2 Tax=Actinomycetales RepID=NUSB_ACIC1 Length = 145 Score = 130 bits (329), Expect = 9e-30, Method: Composition-based stats. Identities = 39/127 (30%), Positives = 68/127 (53%), Gaps = 3/127 (2%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 AR +AR+ A+ L+ L D ++ A D + Y L+ GVA + A +D Sbjct: 3 ARTKARKRALDVLFEADLRAADPLEILADHTARADTPVPE--YAVRLVEGVAAHRAEIDR 60 Query: 65 LMKPY-LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 +++ + + L+ + V++ +LR+A+YEL ++VP V + EA++LA+ +S FV Sbjct: 61 IIEQFAVGWTLQRMPTVDRNILRLAIYELLWVTEVPDAVVLAEAVKLAQDLSTAESAPFV 120 Query: 124 NGVLDKA 130 NGVL Sbjct: 121 NGVLAAV 127 >UniRef50_C4V2M6 Transcription antitermination protein NusB n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V2M6_9FIRM Length = 137 Score = 130 bits (329), Expect = 9e-30, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 69/135 (51%), Gaps = 5/135 (3%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQ---DVKDVDVLYFRELLAGVATNTAY 61 +RR ARE A+ L+ + + V LA + + D+ Y L+ G + Sbjct: 2 SRRHAREAALLTLFQREFDHDRPPIVAAGDLASDAVDGLTEKDLAYANRLVQGTCSVQPE 61 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSD-VPYKVAINEAIELAKSFGAEDS 119 +D ++ L + V++ ++R+A YE+ + + + +AINEA+ELAK +G++D+ Sbjct: 62 IDAAIECMAKEWKLHRMAPVDRNLIRMAYYEMCYQEERIDPPIAINEAVELAKKYGSDDA 121 Query: 120 HKFVNGVLDKAAPVI 134 ++VNG+L + Sbjct: 122 GRYVNGILAALQKSM 136 >UniRef50_A6DTV7 NusB antitermination factor n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DTV7_9BACT Length = 156 Score = 130 bits (329), Expect = 9e-30, Method: Composition-based stats. Identities = 41/149 (27%), Positives = 71/149 (47%), Gaps = 11/149 (7%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAE----------QDVKDVDVLYFRE 50 +K R R+ A+Q LY +++ + + E+ + + + RE Sbjct: 5 IKRNPRSLGRKWALQYLYQSDIAKLEFQEEEFALFIDQIENAPSAPNEHESSKGFAFARE 64 Query: 51 LLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIE 109 ++ GV +D + ++ + ++ VLRIA++EL + V +NEA+E Sbjct: 65 IIQGVLDKVKEIDAYITEEAKNWKIDRMATTDRNVLRIAVFELMEIKSNHPVVIVNEAVE 124 Query: 110 LAKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 LAK+FG DS KFVNG+ D A +RP + Sbjct: 125 LAKTFGNTDSFKFVNGIGDTLARKLRPEE 153 >UniRef50_D2B6P7 Transcription antitermination factor NusB n=3 Tax=Actinomycetales RepID=D2B6P7_STRRD Length = 136 Score = 130 bits (329), Expect = 9e-30, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 4/134 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +AR +AR A+ L+ + D V + L + + Y ++ GV + A +D Sbjct: 2 SARGKARRRALDILFEAEARSQDPLSVLAERLERAEPPVNE--YTATIVEGVCRHRARID 59 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 L+ Y L+ + V++ +LR YEL DVP V I+E + LA ++S +F Sbjct: 60 ELITTYAEGWTLDRMPAVDRNLLRGGTYELLWMPDVPEGVVISEWVSLASELSTDESPQF 119 Query: 123 VNGVLDKAAPVIRP 136 VNG++ + ++P Sbjct: 120 VNGLMARF-KQLKP 132 >UniRef50_B0SB76 N utilization substance protein B homolog n=6 Tax=Leptospira RepID=NUSB_LEPBA Length = 140 Score = 130 bits (329), Expect = 1e-29, Method: Composition-based stats. Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 1/131 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 ++R R R A+ LY L D ++ + + Y L+ GV N +D Sbjct: 2 SSRHRGRSLALMCLYQIDLVGTDPDRAMKFDWYDKKITREEKDYAVFLVKGVVENRKAID 61 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 L+K Y L + V + +LR+++ L K + V INEA+EL K F E+S +F Sbjct: 62 TLIKKYSENWELSRISVVNRCILRLSILSLQKEPFLAAPVVINEAVELTKEFETEESAQF 121 Query: 123 VNGVLDKAAPV 133 +NG+LD Sbjct: 122 INGLLDAFYKK 132 >UniRef50_C4ZCZ0 N utilization substance protein B homolog n=5 Tax=Clostridiales RepID=NUSB_EUBR3 Length = 131 Score = 130 bits (328), Expect = 1e-29, Method: Composition-based stats. Identities = 41/130 (31%), Positives = 70/130 (53%), Gaps = 3/130 (2%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQ--DVKDVDVLYFRELLAGVATNTAYL 62 R + RE + L+ + + + L ++ + D + Y E + + + A L Sbjct: 2 TRSKIRENVFKMLFRVEFHDKSELAEQMELLNDELTNPTDEERQYIDEKCSAIIEHMAEL 61 Query: 63 DGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D L+ + + +V+ A++R+A+YE+ D+P KV+INEA+ELAK +GA++S Sbjct: 62 DALIDEKSTGWKTNRMAKVDLAIIRLAVYEIKFEDDIPTKVSINEAVELAKKYGADESGA 121 Query: 122 FVNGVLDKAA 131 FVNGVL K A Sbjct: 122 FVNGVLAKFA 131 >UniRef50_D1N6Z8 NusB antitermination factor n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N6Z8_9BACT Length = 170 Score = 130 bits (328), Expect = 1e-29, Method: Composition-based stats. Identities = 37/150 (24%), Positives = 70/150 (46%), Gaps = 11/150 (7%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADV----------EYQFLAEQDVKDVDVLYFRE 50 KP A+R RE A+Q L+ + + E L E + Y ++ Sbjct: 12 FKPHAKRLGRELAMQYLFRCDMRDELPSAATFGQFFEEVREQHALQENRLARKGREYAQQ 71 Query: 51 LLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIE 109 L VA + +D ++ + L V++ ++RIA+ E+ +VP V+I+EA+E Sbjct: 72 LYNNVAVHKEEIDATIQARSENWEWDRLSVVDRNIMRIAVAEMLYEEEVPPVVSIDEAVE 131 Query: 110 LAKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 +A+ + E + F+NGVL+ ++ + + Sbjct: 132 IARDYSGEAAGNFINGVLNGVKDTLKRSPR 161 >UniRef50_Q8DSE9 N utilization substance protein B homolog n=5 Tax=Streptococcus RepID=NUSB_STRMU Length = 142 Score = 130 bits (328), Expect = 1e-29, Method: Composition-based stats. Identities = 40/129 (31%), Positives = 72/129 (55%), Gaps = 4/129 (3%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVL--YFRELLAGVATNTAYL 62 +RR RE A QAL+S + +++ + + +++ ++ L + L+ GV+ + Sbjct: 8 SRRDLRERAFQALFSLEFGGDNLTAARFAYTYDKNEEEEAELPLFLLTLIQGVSDCRREI 67 Query: 63 DGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 D + +L L L ++K++LR+ LYE+ + P +VA+NE IE+AK + E S Sbjct: 68 DKNISIHLKSGWTLSRLTLIDKSLLRLGLYEIKYHKETPERVALNEIIEIAKKYSDEKSS 127 Query: 121 KFVNGVLDK 129 KF+NGVL + Sbjct: 128 KFINGVLSQ 136 >UniRef50_B5YHQ2 N utilization substance protein B homolog n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=NUSB_THEYD Length = 151 Score = 130 bits (328), Expect = 1e-29, Method: Composition-based stats. Identities = 44/139 (31%), Positives = 79/139 (56%), Gaps = 11/139 (7%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLY----------FRELLAGV 55 RR+ARE +Q LY+ ++++N Y FL E+ K + Y +L+ G Sbjct: 3 RRKAREYVLQFLYACEMNENTQKICNYNFLQEEIEKFWERNYEEQNSDIKSFANQLIEGT 62 Query: 56 ATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 + +D +++ Y + +E + ++K +LR ++YE+ R D+PY+V INEA+E+AK + Sbjct: 63 IEHIDIIDKIIQKYADKWNIERMITIDKNILRFSIYEILYRQDIPYQVTINEAVEIAKKY 122 Query: 115 GAEDSHKFVNGVLDKAAPV 133 ++S F+NG+LD+ A Sbjct: 123 STKESAAFINGILDRIAKE 141 >UniRef50_B6GCG9 Putative uncharacterized protein n=2 Tax=Collinsella RepID=B6GCG9_9ACTN Length = 216 Score = 130 bits (327), Expect = 2e-29, Method: Composition-based stats. Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 5/132 (3%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 R AR A+Q L+ ++ + DV D Y ++ GV N +D Sbjct: 9 GRTLARSQALQILFQAEVRGESVGDVLAGDFTLSKGPLAD--YAIQIARGVDANRERIDS 66 Query: 65 LMKPYLSRL-LEELGQVEKAVLRIALYELSKR--SDVPYKVAINEAIELAKSFGAEDSHK 121 ++ + LE + ++ +LR A+YEL + + V INEA+E+AK++G +DS Sbjct: 67 ALRAVSANWSLERMPGADRNLLRAAVYELYFQVADTLDAAVVINEAVEIAKAYGTDDSAG 126 Query: 122 FVNGVLDKAAPV 133 FVNGVL + Sbjct: 127 FVNGVLGRIVRE 138 >UniRef50_B9LDT2 N utilization substance protein B homolog n=6 Tax=Chloroflexi (class) RepID=NUSB_CHLSY Length = 151 Score = 130 bits (327), Expect = 2e-29, Method: Composition-based stats. Identities = 45/133 (33%), Positives = 71/133 (53%), Gaps = 3/133 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 + R R R A+Q L+ + + I V + L ++ + + R L+ G + +YLD Sbjct: 8 SQRHRVRIAALQILFEVDETDHAIDQVLERRLTDEPMSQESAEFLRRLVFGAWEHRSYLD 67 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRS--DVPYKVAINEAIELAKSFGAEDSH 120 +++ + ++ V+KAVLRIAL+EL P K INEA+ELAK FG+++S Sbjct: 68 RIIEEAAPNWPVAQMPGVDKAVLRIALFELLIDDVERTPIKAVINEAVELAKQFGSDNSS 127 Query: 121 KFVNGVLDKAAPV 133 +FVNGVL Sbjct: 128 RFVNGVLGTVVTR 140 >UniRef50_B3QJK9 N utilization substance protein B homolog n=9 Tax=Alphaproteobacteria RepID=NUSB_RHOPT Length = 174 Score = 129 bits (326), Expect = 2e-29, Method: Composition-based stats. Identities = 42/147 (28%), Positives = 70/147 (47%), Gaps = 10/147 (6%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQF--------LAEQDVKDVDVLYFRELLA 53 K R AR AVQALY + I + +F + + + +FR+++A Sbjct: 24 KANRRGAARLAAVQALYQMDIGGAGINETFAEFESFWIGNEVEGEQYLPAEAAFFRDIVA 83 Query: 54 GVATNTAYLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELA 111 GV +D L+ L+ L + + +AV+R YEL R D+P +V ++E +++A Sbjct: 84 GVVREQKQIDPLIDDLLARGWPLARIDAILRAVMRAGAYELEHRKDIPARVVVSEYVDVA 143 Query: 112 KSFGAEDSHKFVNGVLDKAAPVIRPNK 138 +F +D VN VLD+ A R + Sbjct: 144 HAFVEKDETGMVNAVLDQIARRFRAEE 170 >UniRef50_Q47QY5 N utilization substance protein B homolog n=21 Tax=Actinomycetales RepID=NUSB_THEFY Length = 142 Score = 129 bits (326), Expect = 2e-29, Method: Composition-based stats. Identities = 38/130 (29%), Positives = 71/130 (54%), Gaps = 3/130 (2%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 + +R +AR AV+ LY ++ +++V + A+ + + + +L V + A Sbjct: 6 RRGSRHKARVRAVEILYEAEVRGVPVSEVIERRRAQTEPPINE--FTEQLATRVDEHRAR 63 Query: 62 LDGLMKPY-LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D L++ Y + L+ + V++ +LRI +YEL D+P VAI EA+ +AK ++S Sbjct: 64 IDELLETYAIGWTLDRMPVVDRNILRIGVYELLWADDIPDGVAIAEAVAMAKELSTDESP 123 Query: 121 KFVNGVLDKA 130 FVNG+L + Sbjct: 124 VFVNGLLSRL 133 >UniRef50_A7HX88 NusB antitermination factor n=1 Tax=Parvibaculum lavamentivorans DS-1 RepID=A7HX88_PARL1 Length = 171 Score = 129 bits (325), Expect = 3e-29, Method: Composition-based stats. Identities = 42/134 (31%), Positives = 65/134 (48%), Gaps = 10/134 (7%) Query: 12 CAVQALYSWQLSQNDIADVEYQFLA--------EQDVKDVDVLYFRELLAGVATNTAYLD 63 AVQALY ++ + +V +F+ + ++ D ++F +++ GV LD Sbjct: 25 FAVQALYQMDIAATPLDEVVEEFVEHRLEEPEGDNEIFAADKVHFEDVVRGVVREQRELD 84 Query: 64 GLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 + L+ L L +A+LR YEL + DVP KV INE +E+A +F D Sbjct: 85 VQVNSALAKGWSLARLDATLRAILRCGTYELRRCKDVPLKVVINEYVEIAHAFFEGDEPG 144 Query: 122 FVNGVLDKAAPVIR 135 VN VLD+ IR Sbjct: 145 VVNAVLDRLGRDIR 158 >UniRef50_B9E6Q9 N utilization substance protein B homolog n=6 Tax=Staphylococcaceae RepID=NUSB_MACCJ Length = 130 Score = 129 bits (325), Expect = 3e-29, Method: Composition-based stats. Identities = 41/130 (31%), Positives = 73/130 (56%), Gaps = 6/130 (4%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVL-YFRELLAGVATNTAYLD 63 +R +RE A+Q L+ + N+ ++ + V+ + + EL+ GV + LD Sbjct: 2 SRTESREHAIQILFQIE---NEAHEISVEDATRFIVEPPNRDVFADELVHGVISKQNELD 58 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + P+L LE L ++++ +LR++ +EL +D P KV +NEA+ LAK F ++S+KF Sbjct: 59 DKITPHLKSWALERLNKIDRIILRLSAFELLY-TDAPEKVIVNEAVNLAKKFSDDESYKF 117 Query: 123 VNGVLDKAAP 132 +NGVL + Sbjct: 118 INGVLSEIIK 127 >UniRef50_D0WFZ4 Transcription antitermination factor NusB n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WFZ4_9ACTN Length = 218 Score = 129 bits (325), Expect = 3e-29, Method: Composition-based stats. Identities = 42/140 (30%), Positives = 72/140 (51%), Gaps = 10/140 (7%) Query: 1 MKPAARRR---ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDV--LYFRELLAGV 55 M A R+ R A LY ++ + + L E D+ + Y R LL G Sbjct: 1 MGKAKRQEHTFGRRSAASVLYQSEIIGKPVDRI----LEEGDIPEEAGLNEYGRLLLLGF 56 Query: 56 ATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 + + A +D ++ + + + V++ +LRI +YE+ VP V+INEA+E+AK F Sbjct: 57 SAHRAEIDRIISERSANWAVNRMPMVDRELLRITVYEMKYVDAVPIPVSINEAVEIAKEF 116 Query: 115 GAEDSHKFVNGVLDKAAPVI 134 G +DS++F+NG+L + A + Sbjct: 117 GGDDSYRFINGLLGRVARDL 136 >UniRef50_Q1AW09 N utilization substance protein B homolog n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=NUSB_RUBXD Length = 139 Score = 129 bits (325), Expect = 3e-29, Method: Composition-based stats. Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 4/125 (3%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 +RR AR+ A LY ++ + + ++ A + + Y ++ GV LD Sbjct: 2 SRRTARKQAFFILYQSDVTGSPAEPLIGRWRAYRGELE---DYAERVVRGVERERERLDA 58 Query: 65 LMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 ++ + + V++ +LR+ALYE+ DVP +VA+NEA+ELAK F E++ FV Sbjct: 59 VLDGVSEGWPVWRMSAVDRTILRLALYEMLHVQDVPPEVAVNEAVELAKGFSGEEAPSFV 118 Query: 124 NGVLD 128 GVL Sbjct: 119 GGVLR 123 >UniRef50_C8W9W3 NusB antitermination factor n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8W9W3_ATOPD Length = 167 Score = 129 bits (324), Expect = 4e-29, Method: Composition-based stats. Identities = 41/137 (29%), Positives = 71/137 (51%), Gaps = 7/137 (5%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVE--YQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 R RAR A+Q L+ + + + +V L+E + + Y R L G L Sbjct: 7 GRTRARSQALQLLFQAEATNRSVLEVLGGDYTLSEGPLDE----YARLLAVGADGIRDDL 62 Query: 63 DGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D ++ Y ++ + V++ +LRI+LYE+ K +V VAINE ++LA+++ +DS + Sbjct: 63 DDIIAAYSKDWSIDRMPSVDRNLLRISLYEILKVPEVDVAVAINEVVDLARAYCGDDSPR 122 Query: 122 FVNGVLDKAAPVIRPNK 138 F+NGVL + I + Sbjct: 123 FINGVLGRIVDDIDAGE 139 >UniRef50_Q03FZ6 N utilization substance protein B homolog n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=NUSB_PEDPA Length = 133 Score = 129 bits (324), Expect = 4e-29, Method: Composition-based stats. Identities = 38/130 (29%), Positives = 73/130 (56%), Gaps = 4/130 (3%) Query: 6 RRRARECAVQALYSWQLSQN-DIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 R + RE A + +++ + + D+++++ Q L E + + ++L+ GV+ N ++ Sbjct: 5 RHQIRESAFKIIFAKSANPDADLSELQDQVLEEFHETEAPDQFLKDLVMGVSLNLEAINE 64 Query: 65 LMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + L ++ L ++ +L++ YE+ ++ P KVAINEA+ELAK + ED+ KF Sbjct: 65 TISGELKKGWTVKRLESPDRVILQMGTYEIKY-TETPDKVAINEALELAKKYTDEDARKF 123 Query: 123 VNGVLDKAAP 132 +NGVL A Sbjct: 124 INGVLSNIAK 133 >UniRef50_D2R650 NusB antitermination factor n=2 Tax=Planctomycetaceae RepID=D2R650_9PLAN Length = 136 Score = 129 bits (324), Expect = 4e-29, Method: Composition-based stats. Identities = 52/134 (38%), Positives = 73/134 (54%), Gaps = 3/134 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVD-VLYFRELLAGVATNTAYL 62 A R RARE +Q LY L+ + V FL + DV+ V + R+LL GV L Sbjct: 2 ARRSRAREVVLQILYEDDLNPDRSIAVSDVFLRRRLGDDVELVDFARDLLRGVRGRRKEL 61 Query: 63 DGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D L++ L+ + ++ VLR+ YE+ + P +VAINEA+ELAK FGA S + Sbjct: 62 DVLLQQKADHWTLDRMAVTDRNVLRLGAYEILH-TQTPQRVAINEAVELAKRFGARQSPQ 120 Query: 122 FVNGVLDKAAPVIR 135 FVNG+LD+ R Sbjct: 121 FVNGILDRFLQKKR 134 >UniRef50_Q2W4S5 N utilization substance protein B homolog n=3 Tax=Magnetospirillum RepID=NUSB_MAGSA Length = 156 Score = 128 bits (323), Expect = 5e-29, Method: Composition-based stats. Identities = 43/143 (30%), Positives = 69/143 (48%), Gaps = 8/143 (5%) Query: 4 AARRRARECAVQALYSWQLSQNDIA----DVEYQFLAEQD--VKDVDVLYFRELLAGVAT 57 A R AR AVQ LY +++ D D + + AE + D D +++ GV+ Sbjct: 9 AKRSAARLAAVQVLYQMEMTGADTERALQDAKDRRAAEPKGRMADPDNSLLNQVVRGVSA 68 Query: 58 NTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG 115 +DG + L +E L V +A++R +ELS R P +V I+E +++A +F Sbjct: 69 QLEDIDGHVGRALSGDWTVERLEAVLRAIVRAGAWELSARPQTPARVCISEWVDVAHAFY 128 Query: 116 AEDSHKFVNGVLDKAAPVIRPNK 138 + VNGVLD A +R + Sbjct: 129 SGPEPGLVNGVLDHLAQTLRGGE 151 >UniRef50_D1B3U2 Transcription antitermination factor NusB n=3 Tax=Campylobacterales RepID=D1B3U2_SULD5 Length = 136 Score = 128 bits (323), Expect = 5e-29, Method: Composition-based stats. Identities = 43/131 (32%), Positives = 67/131 (51%), Gaps = 2/131 (1%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 A R +ARE + LY+ + I + E+ +++ + L GV + + +D Sbjct: 2 ATRHQARESIITLLYAEDIGNAGIDKFIDELFEEKKIRNQQKEFALGLYQGVKAHLSVID 61 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + +L L E+G +E+A+LR+ YE+ S++ V INEAIELAK E S KF Sbjct: 62 EAINRHLKEWNLSEIGMLERAILRLGGYEILY-SELDNAVVINEAIELAKKLCNETSPKF 120 Query: 123 VNGVLDKAAPV 133 +NGVLD Sbjct: 121 INGVLDAICKE 131 >UniRef50_Q836W8 N utilization substance protein B homolog n=39 Tax=Lactobacillales RepID=NUSB_ENTFA Length = 154 Score = 128 bits (323), Expect = 5e-29, Method: Composition-based stats. Identities = 45/143 (31%), Positives = 75/143 (52%), Gaps = 10/143 (6%) Query: 5 ARRRARECAVQALYSWQLS----QNDIADVEYQF----LAEQDVKDVDVLYFRELLAGVA 56 R RE A+QAL+ + + D D + + +D +D+ Y L+ GV Sbjct: 11 TRHEIREKALQALFPLDFNADLTKQDAIDYALAYDNREIVSEDGEDLVPTYLDLLVGGVC 70 Query: 57 TNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 + A LD ++ +L + ++ L +++ +LR+A++E+ SDVP VA+NEA+EL+K + Sbjct: 71 SRKAELDEVITNHLGNNWSMQRLAKIDIVILRLAIFEMLYVSDVPNIVALNEAVELSKKY 130 Query: 115 GAEDSHKFVNGVLDKAAPVIRPN 137 + S KFVNGVL I Sbjct: 131 SDDRSRKFVNGVLSNVMKEIDSE 153 >UniRef50_Q5FNA1 N utilization substance protein B homolog n=1 Tax=Gluconobacter oxydans RepID=NUSB_GLUOX Length = 160 Score = 128 bits (323), Expect = 6e-29, Method: Composition-based stats. Identities = 42/142 (29%), Positives = 69/142 (48%), Gaps = 15/142 (10%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFL-----------AEQDVKDVDVLYFRELLA 53 +R AR AVQAL+ + S + V QF+ + + D D+ F+E++ Sbjct: 15 SRTIARVAAVQALFQCEQSGDTAETVISQFIRHRRISSTASFDDGHIPDADLKLFQEIVL 74 Query: 54 GVATNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELA 111 GV +D + L L L V +A+LR A++E+ +D P ++ INE +++A Sbjct: 75 GVTRRQDDIDAKLSDVLPEQWPLPRLDPVLRALLRAAVFEIG--TDTPDRIIINEYLDVA 132 Query: 112 KSFGAEDSHKFVNGVLDKAAPV 133 F + D K VNG+LD + Sbjct: 133 HGFFSGDEPKMVNGILDTLSRR 154 >UniRef50_C8WEQ4 NusB antitermination factor n=4 Tax=Zymomonas mobilis RepID=C8WEQ4_ZYMMN Length = 157 Score = 128 bits (322), Expect = 7e-29, Method: Composition-based stats. Identities = 42/144 (29%), Positives = 68/144 (47%), Gaps = 10/144 (6%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQF--------LAEQDVKDVDVLYFRELLAG 54 AR AR AVQALY ++ + + + +F + + + +F +++ G Sbjct: 10 KNARSAARLAAVQALYQREMEKTPLNILLDEFHQYRLGATIEDATYTKAEPSFFDDIVRG 69 Query: 55 VATNTAYLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAK 112 V T +D ++ LS L+ L + + +LR YEL R DVP I+E I++A Sbjct: 70 VGTRCEEIDRVISENLSERWSLDRLDRPMRQILRAGTYELLARPDVPTATIISEYIDVAN 129 Query: 113 SFGAEDSHKFVNGVLDKAAPVIRP 136 +F FVNG+LD A +R Sbjct: 130 AFYDRQEKNFVNGLLDTVAKKLRS 153 >UniRef50_UPI00016C434C transcription antitermination protein NusB n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C434C Length = 139 Score = 128 bits (322), Expect = 7e-29, Method: Composition-based stats. Identities = 45/131 (34%), Positives = 68/131 (51%), Gaps = 5/131 (3%) Query: 13 AVQALYSWQLSQNDIA-DVEYQFLAEQDVKDVDVL-YFRELLAGVATNTAYLDGLMKPYL 70 +Q L+ W + + QF ++ + D ++ Y L GVA +D +K Sbjct: 2 VLQLLFQWDQNPTKVPRKAIQQFARDRLLGDAEMSTYALSLYDGVAGRKDAIDEALKSAA 61 Query: 71 SRL-LEELGQVEKAVLRIALYELSKRS-DVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 + L + V++ VLR+ +EL + P +V INEAIELAK FG+EDS FVNGVLD Sbjct: 62 TNWRLTRMTPVDRNVLRLGAFELLFDAAPQPLEVVINEAIELAKRFGSEDSPAFVNGVLD 121 Query: 129 KAAPVIRPNKK 139 + +R +K Sbjct: 122 RVGK-MRDERK 131 >UniRef50_A5CWS4 N utilization substance protein B n=2 Tax=sulfur-oxidizing symbionts RepID=A5CWS4_VESOH Length = 141 Score = 128 bits (322), Expect = 7e-29, Method: Composition-based stats. Identities = 52/136 (38%), Positives = 82/136 (60%), Gaps = 1/136 (0%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 ++R RE +QALY + +S ++ +E QFL ++ + ++F +L + N L Sbjct: 4 KTPKQRTRERVIQALYQYLVSGGEVFQIEQQFLNQKQ-GKISKVFFSDLFINILENRFVL 62 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 D L+ +SR EELG VE ++L + +EL S+VPYKV INE++ LAK +GAE S+K Sbjct: 63 DELITSTISRGTEELGSVEHSILYLGTFELKFNSEVPYKVVINESLALAKLYGAEGSYKL 122 Query: 123 VNGVLDKAAPVIRPNK 138 +N LDK A ++R + Sbjct: 123 INVSLDKLARILRKIE 138 >UniRef50_B0MQ18 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MQ18_9FIRM Length = 143 Score = 128 bits (322), Expect = 7e-29, Method: Composition-based stats. Identities = 40/139 (28%), Positives = 71/139 (51%), Gaps = 3/139 (2%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 + R RE A+ L+ +L+ + ++ +++ +L GVA + Sbjct: 4 RKLTRHEMREAALLILFQMKLNPETLDEILEDCKESFEMEYNSQS--VKLAKGVAEHEDE 61 Query: 62 LDGLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 L+G+++ Y SR L+ + + A+++IALYE+ VP KVAINEAIE AK + + Sbjct: 62 LNGIIESYSPSRKLDRISYINLAIMKIALYEMKYCPSVPDKVAINEAIEFAKEYADKTDV 121 Query: 121 KFVNGVLDKAAPVIRPNKK 139 +F+NGVL+ ++ Sbjct: 122 RFINGVLNSYYKDNPTKEQ 140 >UniRef50_B5YE05 N utilization substance protein B homolog n=2 Tax=Dictyoglomus RepID=NUSB_DICT6 Length = 144 Score = 127 bits (321), Expect = 8e-29, Method: Composition-based stats. Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 8/128 (6%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R R RE +Q L+ L Q +VE F D + L G D + Sbjct: 5 RTRCREKVLQLLFQKDLGQ----EVEVDF---SDFSPQGQAFAYRLYDGALQYKDLADSI 57 Query: 66 MKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + + LE +G +E+ +LR+A+ E+ SD+P V +NEA+ELAK + + ++ +FVN Sbjct: 58 ISRFSKNWKLERMGALERNILRLAIAEMFTFSDIPQAVTVNEAVELAKKYVSPEAGRFVN 117 Query: 125 GVLDKAAP 132 G+L Sbjct: 118 GILRNIVR 125 >UniRef50_Q057F3 N utilization substance protein B homolog n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=NUSB_BUCCC Length = 142 Score = 127 bits (321), Expect = 9e-29, Method: Composition-based stats. Identities = 56/129 (43%), Positives = 85/129 (65%), Gaps = 1/129 (0%) Query: 3 PAARRRARECAVQALYSWQLSQNDIA-DVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 + RR+ARE A+Q LYSWQ+S+ + + E + + +D +YF +++ GV N Y Sbjct: 2 KSKRRKARELAIQVLYSWQISKKIVLFETEKYVIEQNKKYSLDKIYFHKIVTGVIKNIFY 61 Query: 62 LDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 +D ++K +S+ L +E+A+LR+A YE+ KR D+PYKV INE IELAK +G+ SHK Sbjct: 62 IDKIIKKNISKKKNRLDYIEQAILRLASYEIIKRLDIPYKVIINEGIELAKIYGSNKSHK 121 Query: 122 FVNGVLDKA 130 F+N +LDK Sbjct: 122 FINSILDKI 130 >UniRef50_A7VX44 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VX44_9CLOT Length = 134 Score = 127 bits (320), Expect = 1e-28, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 66/132 (50%), Gaps = 3/132 (2%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R ARE A ++ + + ++ +D+ + + + GV + +DG+ Sbjct: 3 RHEAREQAFFLIFERTFQEASLEELVESAQLARDITIC--GFAQNVFHGVEKHGEEIDGM 60 Query: 66 MKPY-LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 ++ + + L +V +VLR A+YE+ +P V+INEA+E+AK++G+ + FVN Sbjct: 61 IEKHCIGWTKNRLSRVAVSVLRTAVYEMLYEEKIPVSVSINEAVEIAKTYGSTEDASFVN 120 Query: 125 GVLDKAAPVIRP 136 GVL A + Sbjct: 121 GVLGSVAKELES 132 >UniRef50_A5D1B7 tRNA and rRNA cytosine-C5-methylases n=6 Tax=Clostridia RepID=A5D1B7_PELTS Length = 456 Score = 127 bits (320), Expect = 1e-28, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 57/128 (44%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 ARE A++ + + + Q L + +D + EL G + LD +++ Sbjct: 9 ARELALKVVNAVEEEGAYANLALNQVLEKHRPGKLDRAFATELAYGTLRSLNTLDWVLEQ 68 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 ++ + L + +LR+ +Y+L VP NE ELA+ +G + KFVNGVL Sbjct: 69 FIKQPLSSQSRTVLNILRLGVYQLMFMDRVPPSAVCNEGAELARKYGHAGTVKFVNGVLR 128 Query: 129 KAAPVIRP 136 + + Sbjct: 129 NISRRLNE 136 >UniRef50_Q1JF82 N utilization substance protein B homolog n=57 Tax=Streptococcus RepID=NUSB_STRPD Length = 150 Score = 127 bits (319), Expect = 1e-28, Method: Composition-based stats. Identities = 42/142 (29%), Positives = 75/142 (52%), Gaps = 7/142 (4%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQF----LAEQDVKDVDVL-YFRELLAGVATNT 59 +RR RE A QAL++ ++ +A ++ + + +D + +++ + L+ GV + Sbjct: 8 SRRDLRERAFQALFNIEMGAELLAASQFAYGYDKVTREDAQVLELPIFLLSLVTGVNNHK 67 Query: 60 AYLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 LD L+ +L LE L +K +LR+ L+E+ + P +VA+NE IE+AK + E Sbjct: 68 EELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEVAKKYSDE 127 Query: 118 DSHKFVNGVLDKAAPVIRPNKK 139 S KF+NG+L + K Sbjct: 128 TSAKFINGLLSQYVSEAPSANK 149 >UniRef50_A7NB00 Transcription antitermination factor n=19 Tax=Francisella RepID=A7NB00_FRATF Length = 141 Score = 127 bits (319), Expect = 1e-28, Method: Composition-based stats. Identities = 50/141 (35%), Positives = 77/141 (54%), Gaps = 3/141 (2%) Query: 1 MKPAARRR--ARECAVQALYSWQLSQNDIADVEYQFLAEQ-DVKDVDVLYFRELLAGVAT 57 MK AR R AR AVQALY +++ N ++++ Q+ A+ D D F L+ V T Sbjct: 1 MKTTARARNNARLYAVQALYQKKIADNTFSELKIQYYADNADRHYTDWDLFYRLIDAVKT 60 Query: 58 NTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 N +D +K S +E + V+ VL++A+ EL + + PY+V I E +E+ S G E Sbjct: 61 NQDTIDKYIKENSSNGVESINYVDYVVLQVAIAELIECLENPYQVIIKEYVEICYSMGTE 120 Query: 118 DSHKFVNGVLDKAAPVIRPNK 138 + +KF+N VL A IR + Sbjct: 121 EGYKFINAVLQNLAKSIRSEE 141 >UniRef50_C7H0C2 Transcription antitermination factor NusB n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H0C2_9FIRM Length = 135 Score = 126 bits (318), Expect = 2e-28, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 67/131 (51%), Gaps = 1/131 (0%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R +AR A+Q ++ + + + + L++ + Y RE+ + V N +D Sbjct: 5 RSKARTIAMQIIFQIPVHKTTDKVLVDKILSDYKNIGKEEAYIREVFSLVTDNIDAIDAE 64 Query: 66 MKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + + ++ + +V+ A+LR+A+ E+ D+P VA+NEA+ +AK F + S KF+N Sbjct: 65 LNAKMKGWTIDSIPKVDLAILRLAVAEICYAKDIPKVVAVNEAVRIAKKFSDDKSAKFIN 124 Query: 125 GVLDKAAPVIR 135 G+L + Sbjct: 125 GILANIGKDYK 135 >UniRef50_Q4JVG6 N utilization substance protein B homolog n=5 Tax=Corynebacterium RepID=NUSB_CORJK Length = 202 Score = 126 bits (318), Expect = 2e-28, Method: Composition-based stats. Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 6/139 (4%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVK----DVDVLYFRELLAGVAT 57 + +R +AR AV L+ + D ++ + ++ Y ++++ GVAT Sbjct: 19 RHGSRYKARRRAVDILFEAEFRDIDPVEIVEERISLAKDSANQVKPVPEYTQQIVPGVAT 78 Query: 58 NTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG 115 N LD + +L L+ L V++AVLR+A +EL DVP +VA+ E +ELA + Sbjct: 79 NLDALDEAIALHLSSDWQLDRLPAVDRAVLRVAAWELKFNDDVPPQVAVVEGVELASEYS 138 Query: 116 AEDSHKFVNGVLDKAAPVI 134 + + +++ VLD + Sbjct: 139 HDKAPSYIHAVLDGINKDL 157 >UniRef50_A5WHT3 NusB antitermination factor n=1 Tax=Psychrobacter sp. PRwf-1 RepID=A5WHT3_PSYWF Length = 252 Score = 126 bits (317), Expect = 2e-28, Method: Composition-based stats. Identities = 48/148 (32%), Positives = 76/148 (51%), Gaps = 13/148 (8%) Query: 4 AARRRARECAVQALYSWQLSQ-------------NDIADVEYQFLAEQDVKDVDVLYFRE 50 AA R+AR A+Q LY W ++ N D+ + A + V + Y+ Sbjct: 35 AAVRKARRFALQGLYEWLMTDHRFEQMGQGEWKANPPHDIAARTRATNAMHTVHLGYYHT 94 Query: 51 LLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIEL 110 L+ + L+ L+ +L R ++++ VE AVL I YEL +PYKV ++EA++L Sbjct: 95 LMREIPEQITDLEALIAQHLDRAIDKIDMVEHAVLLIGAYELKNSLHIPYKVVLDEAMKL 154 Query: 111 AKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 FGA D+HK +N V+DK A +R + Sbjct: 155 NTHFGATDAHKLINAVMDKLAAQLRTVE 182 >UniRef50_Q0APG4 N utilization substance protein B homolog n=3 Tax=Alphaproteobacteria RepID=NUSB_MARMM Length = 160 Score = 126 bits (317), Expect = 2e-28, Method: Composition-based stats. Identities = 44/136 (32%), Positives = 65/136 (47%), Gaps = 10/136 (7%) Query: 13 AVQALYSWQLSQNDIADVEYQFLAE--------QDVKDVDVLYFRELLAGVATNTAYLDG 64 AVQALY ++ + V +F + + D +F L+AGV A +D Sbjct: 24 AVQALYQMEIGGLGASAVIREFREHRFGACGEAPEFVEADEDFFESLVAGVVERQADVDP 83 Query: 65 LMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 M L LE L +A+LR+ +EL R DVP +V I+E IE+A +F KF Sbjct: 84 AMDALLADKWRLERLDATVRAILRVGGFELLYRKDVPARVVIDEYIEVANAFFEGAEPKF 143 Query: 123 VNGVLDKAAPVIRPNK 138 +N D+ A RP++ Sbjct: 144 INAAFDRCARGARPDE 159 >UniRef50_Q2S6K8 N utilization substance protein B homolog n=1 Tax=Salinibacter ruber DSM 13855 RepID=NUSB_SALRD Length = 160 Score = 126 bits (317), Expect = 2e-28, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 64/138 (46%), Gaps = 2/138 (1%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQ-FLAEQDVKDVDVLYFRELLAGVATNTAYL 62 ++RR ARE ++ LY+ + + D + D + L Sbjct: 2 SSRRDAREQVMKTLYANEQTDGDAEQALHALVRVPLDEDPSTRDFAEHLFRETLKTMEEA 61 Query: 63 DGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D +++ + + + +++++LR+A EL K +VP KV+++EAIE+AK + S Sbjct: 62 DEIIEKHADNWEIHRIAAIDRSLLRMATTELLKFEEVPPKVSVDEAIEIAKRYSTPRSGT 121 Query: 122 FVNGVLDKAAPVIRPNKK 139 FVNGV+D + + Sbjct: 122 FVNGVIDAILLDLHDQGR 139 >UniRef50_Q38XV0 N utilization substance protein B homolog n=9 Tax=Lactobacillus RepID=NUSB_LACSS Length = 142 Score = 125 bits (316), Expect = 3e-28, Method: Composition-based stats. Identities = 45/142 (31%), Positives = 70/142 (49%), Gaps = 9/142 (6%) Query: 1 MKPAARRRARECAVQALYSWQLSQN-DIADVEYQFLAEQDVKDVDV------LYFRELLA 53 M R + R+ A Q L++ +Q+ ++ D L +V Y L++ Sbjct: 1 MPNFNRHQIRQAAFQVLFTLNANQSLELEDAYQAVLTMDQFDAEEVTPVEVPAYLAFLVS 60 Query: 54 GVATNTAYLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELA 111 GV N A LD + PYL L L + + +LR+ L+E+ ++ P KVA+NEA+ELA Sbjct: 61 GVTENQAALDAALTPYLKKGWQLSRLAKPDLIILRLGLFEMQNSTEAPAKVALNEALELA 120 Query: 112 KSFGAEDSHKFVNGVLDKAAPV 133 K F + + F+NGVL K Sbjct: 121 KQFTDDQAKGFINGVLSKFVEA 142 >UniRef50_C5SLV1 NusB antitermination factor n=2 Tax=Caulobacteraceae RepID=C5SLV1_9CAUL Length = 177 Score = 125 bits (315), Expect = 4e-28, Method: Composition-based stats. Identities = 45/146 (30%), Positives = 68/146 (46%), Gaps = 15/146 (10%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFL-------------AEQDVKDVDVLYFREL 51 AR AR VQALY +++ + V +F EQ + D +F + Sbjct: 32 ARTVARLVLVQALYQMEIAGTGVESVIREFADFRFDGNIEGECGEEQRLGTADEAFFADG 91 Query: 52 LAGVATNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIE 109 L + A +D L+ L + L+ + +A+LR +EL R DV +V INE +E Sbjct: 92 LRTIVKAQAEIDVLIAERLASNWRLDRIDTTLRAILRAGAWELKFRPDVAVEVVINEYVE 151 Query: 110 LAKSFGAEDSHKFVNGVLDKAAPVIR 135 +AK+F + +FVNG LD A R Sbjct: 152 IAKAFFGNEEARFVNGALDGIAKDAR 177 >UniRef50_A5ZPE1 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=A5ZPE1_9FIRM Length = 180 Score = 125 bits (315), Expect = 5e-28, Method: Composition-based stats. Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 3/130 (2%) Query: 6 RRRARECAVQALYSWQLSQND--IADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 R RE + L+ Q + + V F ++++ D + + + +D Sbjct: 3 RSEQREHIFKLLFMTQFNSENEMSDQVSMYFDTLGELEEKDQEAIQNKYQHILEHLDEID 62 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ Y + +V+ LR+A+YE+ +VP VAINEA+ELAK FG EDS F Sbjct: 63 QILNEYSRGWKTTRMNRVDLTALRLAVYEMKMDEEVPVGVAINEAVELAKLFGGEDSGSF 122 Query: 123 VNGVLDKAAP 132 VNG+L K A Sbjct: 123 VNGILGKIAS 132 >UniRef50_A3EVA3 Transcription antitermination factor (NusB) n=2 Tax=Leptospirillum sp. Group II RepID=A3EVA3_9BACT Length = 168 Score = 125 bits (314), Expect = 5e-28, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 64/133 (48%), Gaps = 5/133 (3%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLM 66 +AR +Q+L++ + F + L+ L + + +D ++ Sbjct: 22 HKARIEVLQSLFAGEYLPGGPPP----FTLTSTLPSQARLFRDRLGGAIREHREEIDTVI 77 Query: 67 KPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 + L+ + +V++ +LR+ + E+ +VP++V ++E++ELA F ++ +F+NG Sbjct: 78 SRFSVDWTLDRMSRVDRNILRMGICEILFEPEVPFRVTVDESLELAHQFSEPEAVRFING 137 Query: 126 VLDKAAPVIRPNK 138 +L + + P K Sbjct: 138 ILHRVGTELNPEK 150 >UniRef50_A3DCX8 Sun protein n=5 Tax=Clostridium RepID=A3DCX8_CLOTH Length = 455 Score = 125 bits (314), Expect = 6e-28, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 61/125 (48%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 + RE A++ LY ++L Q+ + +D + +++ G +D L++ Sbjct: 9 KVRETALKILYDINEKGAYSNISLNKYLNGQEFESIDRAFITDIVYGTLKWQYTIDYLIE 68 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 + S ++++ +LR+ +Y+L +P+ A NE+++LA +G S K+VN VL Sbjct: 69 KFSSVKIKKISPWIFNILRMGIYQLIYTDKIPFFAACNESVKLAAKYGHAASSKYVNAVL 128 Query: 128 DKAAP 132 A Sbjct: 129 RNIAR 133 >UniRef50_B9CP02 Transcription antitermination factor NusB n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CP02_9ACTN Length = 161 Score = 124 bits (313), Expect = 7e-28, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 67/133 (50%), Gaps = 7/133 (5%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVE--YQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 R AR A+Q L+ + + + +V L+E + Y +L G L Sbjct: 7 GRTLARSQALQLLFQAEQTNRTVEEVLQGEYVLSEGPLD----PYAEKLACGTDGIRDDL 62 Query: 63 DGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D ++ Y + + V++ +L+++LYE+ + S+V + INE IEL+ ++ ++S + Sbjct: 63 DMILNAYSHGWSVSRMPSVDRNLLQLSLYEMLEVSEVDVSITINEVIELSHAYCGDESPR 122 Query: 122 FVNGVLDKAAPVI 134 F+NG+L + A I Sbjct: 123 FINGILGRVAADI 135 >UniRef50_Q6NH08 N utilization substance protein B homolog n=1 Tax=Corynebacterium diphtheriae RepID=NUSB_CORDI Length = 182 Score = 124 bits (312), Expect = 9e-28, Method: Composition-based stats. Identities = 40/139 (28%), Positives = 69/139 (49%), Gaps = 6/139 (4%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDV----LYFRELLAGVAT 57 + +R +AR AV L+ ++ D + + + DV Y +E+++G A Sbjct: 12 RRGSRYKARRRAVDILFEAEMRDIDPVAIVEDRVVLSRLNGTDVNQVPSYTKEIVSGAAM 71 Query: 58 NTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG 115 LD L+ +L LE + V++A+LR++++EL DVP AI E +ELA + Sbjct: 72 ELDRLDELIAAHLAEDWSLERIMTVDRAILRVSVWELIFNPDVPLATAIIEGVELASEYS 131 Query: 116 AEDSHKFVNGVLDKAAPVI 134 + S +V+ +LD A I Sbjct: 132 TDVSPAYVHALLDSIAKNI 150 >UniRef50_C6XHS5 Transcription antitermination protein NusB n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XHS5_LIBAP Length = 170 Score = 123 bits (311), Expect = 1e-27, Method: Composition-based stats. Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 14/147 (9%) Query: 1 MKPAARRR-ARECAVQALYSWQLSQNDIADVE-----YQFLAEQDVKD------VDVLYF 48 +K + RR AR AVQALY + ++ Y+F A+ ++ VD+ +F Sbjct: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69 Query: 49 RELLAGVATNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINE 106 R ++ GV ++D L+ L L + ++LR + EL + VP +V I+E Sbjct: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129 Query: 107 AIELAKSFGAEDSHKFVNGVLDKAAPV 133 + +A F D KF+N VLDK + Sbjct: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156 >UniRef50_Q607V0 N utilization substance protein B homolog n=1 Tax=Methylococcus capsulatus RepID=NUSB_METCA Length = 198 Score = 123 bits (310), Expect = 1e-27, Method: Composition-based stats. Identities = 68/185 (36%), Positives = 92/185 (49%), Gaps = 54/185 (29%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFL----------------------------- 35 AR AR AVQA+Y WQL+++ + D+E QF+ Sbjct: 4 ARTLARRAAVQAVYQWQLARDSLPDIERQFVEELQLAKSLYRRHAEGFELSPPEREQLEE 63 Query: 36 --------------AEQDV-----------KDVDVLYFRELLAGVATNTAYLDGLMKPYL 70 E+DV DV V YF+ELL GVA N A LD + YL Sbjct: 64 LLEKFGRSQGTDEVEEEDVTLEQRASQCQVPDVQVGYFKELLHGVANNLALLDAALAKYL 123 Query: 71 SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 R ++E+ VE+A+LRI YE +R + PY+V +NEAI LAK FGA S+++VNG+LD+ Sbjct: 124 DRPIDEVDPVERAILRIGCYEFMRRPETPYRVILNEAINLAKEFGAAQSYRYVNGILDRV 183 Query: 131 APVIR 135 A R Sbjct: 184 AHECR 188 >UniRef50_C6QHP1 NusB antitermination factor n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QHP1_9RHIZ Length = 170 Score = 123 bits (309), Expect = 2e-27, Method: Composition-based stats. Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 10/135 (7%) Query: 14 VQALYSWQLSQNDIADVEYQFLAE--------QDVKDVDVLYFRELLAGVATNTAYLDGL 65 VQALY ++ D+ DV +FL E + + D ++F ++L V +D + Sbjct: 23 VQALYQMDMAGTDLNDVIAEFLNERLSGDNRDEMLAGADRVFFADILRAVVRRQREIDPM 82 Query: 66 MKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 + L+ L + + +A+LR + EL R DVP +VAI+E + +A+ F E+ + V Sbjct: 83 IDEQLAVGWRLVRVDSILRAILRGGVAELVDRYDVPARVAISEYVNVARVFFDEEEPRVV 142 Query: 124 NGVLDKAAPVIRPNK 138 NGVLDK A +R ++ Sbjct: 143 NGVLDKLARRLRTSE 157 >UniRef50_A9KMC2 N utilization substance protein B homolog n=17 Tax=Bacteria RepID=NUSB_CLOPH Length = 132 Score = 123 bits (309), Expect = 2e-27, Method: Composition-based stats. Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 3/129 (2%) Query: 5 ARRRARECAVQALYSWQLSQNDIAD--VEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 RR RE + L+ + + + V + F + + + Y + + Sbjct: 2 TRREIREHLFRMLFRKEFHEPTELEEQVLFYFDSLESITPEQQEYLNVRFDKINEKLGEI 61 Query: 63 DGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D ++ S L +G+V+ ++R+A +E+ +VP KVAINEAIELAK +G + S Sbjct: 62 DTILANASSGWKLNRMGKVDLNIMRLATFEIRFDDEVPVKVAINEAIELAKKYGGDSSAS 121 Query: 122 FVNGVLDKA 130 FVNG+L K Sbjct: 122 FVNGILAKV 130 >UniRef50_Q5HW85 N utilization substance protein B homolog n=24 Tax=Epsilonproteobacteria RepID=NUSB_CAMJR Length = 132 Score = 123 bits (309), Expect = 2e-27, Method: Composition-based stats. Identities = 42/131 (32%), Positives = 69/131 (52%), Gaps = 3/131 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 A R + R+ + LY+++L+ + + L E+ +++ + L G+ N +D Sbjct: 2 ATRHQVRQSVISLLYAFELNSQN-NVFVDEILDEKKIRNEQKNFTLNLYNGILDNLNNID 60 Query: 64 GLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + +L + LG VE+A+LR+ YEL +D P + INEAIELAK ++S KF Sbjct: 61 ETLNSFLNDNQITALGHVERAILRLGAYELLF-TDTPSAIVINEAIELAKELANDNSPKF 119 Query: 123 VNGVLDKAAPV 133 +NGVLD Sbjct: 120 INGVLDALIKA 130 >UniRef50_B8D2G0 N utilization substance protein B homolog n=1 Tax=Halothermothrix orenii H 168 RepID=NUSB_HALOH Length = 134 Score = 123 bits (309), Expect = 2e-27, Method: Composition-based stats. Identities = 47/133 (35%), Positives = 72/133 (54%), Gaps = 7/133 (5%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVK---DVDVLYFRELLAGVAT 57 MK R + R A+Q LYS +S + E K D YF +++ GV Sbjct: 1 MKI-TRHQERVWALQILYSLDISSELNIQKARKTCREFKYKKVLDKKRYYFEDIVEGVIN 59 Query: 58 NTAYLDGLMKPY-LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 + LD ++ Y + +E + +++ +LRIALYE+ S +P VAI+EA+E+AK FG Sbjct: 60 SRQDLDSIINKYAIDWDVERMACIDRNILRIALYEI--ESGLPVGVAIDEAVEIAKDFGD 117 Query: 117 EDSHKFVNGVLDK 129 +S KF+NG+L K Sbjct: 118 SNSPKFINGILAK 130 >UniRef50_C5C681 N utilization substance protein B homolog n=14 Tax=Actinomycetales RepID=NUSB_BEUC1 Length = 153 Score = 123 bits (309), Expect = 2e-27, Method: Composition-based stats. Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 12/137 (8%) Query: 14 VQALYSWQL--------SQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 + LY + D + + +A + Y E++ GVA + A +D L Sbjct: 12 LDLLYEADQKAVSGGAPASGDAVALLAERIATPHGEAPMREYTVEIVEGVAAHQARIDEL 71 Query: 66 MKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 ++ Y LE + V++A+LRI ++EL DVP VA++EA+ LA +DS FVN Sbjct: 72 LETYAQGWSLERMPAVDRAILRIGVWELLFNDDVPDAVAVDEAVALAAELSTDDSPTFVN 131 Query: 125 GVLD---KAAPVIRPNK 138 G+L + APV+R + Sbjct: 132 GLLGQLLRLAPVLRDEE 148 >UniRef50_Q6A8H8 N utilization substance protein B homolog n=2 Tax=Propionibacterium acnes RepID=NUSB_PROAC Length = 261 Score = 122 bits (308), Expect = 3e-27, Method: Composition-based stats. Identities = 35/129 (27%), Positives = 62/129 (48%), Gaps = 5/129 (3%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 + R +AR+ A+ L+ L D +V + + +L+ GVA LD Sbjct: 37 STRSKARKQALDILFEADLIGTDPLEVLAAR--PGVFTNPVRPFAADLVRGVAATQVGLD 94 Query: 64 GLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 ++ LS L + +V++ + R+ +E+ +D P I+EAIEL++ F +DS Sbjct: 95 SVLTDCLSEGWTLARMPRVDRILARLGAFEILH-TDTPNPAVISEAIELSEEFSTDDSAP 153 Query: 122 FVNGVLDKA 130 F+NG+L Sbjct: 154 FLNGLLGAV 162 >UniRef50_C1XPK4 NusB antitermination factor n=2 Tax=Meiothermus RepID=C1XPK4_9DEIN Length = 156 Score = 122 bits (307), Expect = 3e-27, Method: Composition-based stats. Identities = 37/148 (25%), Positives = 66/148 (44%), Gaps = 16/148 (10%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVD--------------VLYFREL 51 RR+ARE A + L+ + + + D ++ + + R L Sbjct: 2 RRKARELAFKVLFEHAVGGVSLEEAWEHVSQNHDPEEASSERDSYDDPLDQGGLEFARRL 61 Query: 52 LAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIEL 110 L G + + +D ++ + ++ + + AVLR+A YE+ PY I A+++ Sbjct: 62 LEGYQRHESEIDEVLGNTIQGWSFGQMAKTDLAVLRLAAYEMLYEP-TPYAPLIEVAVKI 120 Query: 111 AKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 AK +G EDS +FVNGVL + I + Sbjct: 121 AKRYGGEDSGRFVNGVLGRLLKRIENAE 148 >UniRef50_B0NZC1 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0NZC1_9CLOT Length = 167 Score = 122 bits (307), Expect = 3e-27, Method: Composition-based stats. Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 3/135 (2%) Query: 6 RRRARECAVQALYSWQLSQNDIAD--VEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 R RE + L+ + + + + VE F +++ + E + + +D Sbjct: 33 RSEVREHIFRILFCVEFCEKEEFEDQVELYFHGHENINEKTQKEITEKTENLIEHLDEID 92 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + + + LE LG+ E ++LR+A YE+ VP KVAINEA+ELAK + E + F Sbjct: 93 EQISAHTNAWNLERLGKAELSILRLATYEILLDEQVPRKVAINEAVELAKKYCNEKAAPF 152 Query: 123 VNGVLDKAAPVIRPN 137 +NGVL K + Sbjct: 153 INGVLSKIGQDMDEE 167 >UniRef50_Q0BTF1 N utilization substance protein B homolog n=11 Tax=Acetobacteraceae RepID=NUSB_GRABC Length = 163 Score = 122 bits (307), Expect = 4e-27, Method: Composition-based stats. Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 15/148 (10%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQF-------------LAEQDVKDVDVLYFRELL 52 R +R AVQAL+ + +Q + V QF + + D +V F ++ Sbjct: 8 RTASRVAAVQALFQGEQAQESLEAVIEQFVRFRLGALPGQDGFEDGRIPDAEVPLFSRIV 67 Query: 53 AGVATNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIEL 110 +D L+ L L L V +A+LR EL + P +V INE +++ Sbjct: 68 RAATKEQDVIDPLLITALPAEWPLARLDPVLRALLRAGACELRMKDGPPPRVVINEYLDI 127 Query: 111 AKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 A F + + VNG+L+ A +RP + Sbjct: 128 AHGFFQGEEPRMVNGILNALARQLRPEE 155 >UniRef50_B0PBD5 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PBD5_9FIRM Length = 161 Score = 122 bits (306), Expect = 4e-27, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 3/135 (2%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R +RE A ++ I ++ Q ++++ D Y L + V N +LD Sbjct: 3 RSESREQAFMLIFERSFKDESIDEIIEQAAIGRNLQVDD--YAYRLASDVCGNLPWLDEA 60 Query: 66 MKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + Y + + + +V ++LR++L+E+ VP +INEA+ELAK +G +D FVN Sbjct: 61 IASYSKKWKINRMSRVALSILRLSLWEIDHVDTVPAGASINEAVELAKKYGNDDDFSFVN 120 Query: 125 GVLDKAAPVIRPNKK 139 GVL +++ Sbjct: 121 GVLGAYVRRKDSSEQ 135 >UniRef50_Q1J0I4 N utilization substance protein B homolog n=3 Tax=Deinococcus RepID=NUSB_DEIGD Length = 169 Score = 122 bits (306), Expect = 4e-27, Method: Composition-based stats. Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 14/144 (9%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVD----------VLYFRELLA 53 RR ARE A + L+ + + + V AE D+++ D + + R+L+ Sbjct: 13 GTRRAAREFAFRVLFEAERGKLPLETVF--TRAEGDMREGDDTFAQLNAEALAFARQLVD 70 Query: 54 GVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAK 112 G+ A +D ++ + E++ Q + VLR+A YE+ + P+ I A+ +A+ Sbjct: 71 GLGERRADVDAALRRTIRGWDFEQMAQTDLNVLRLATYEMLYTPE-PHPPVIESAVRIAR 129 Query: 113 SFGAEDSHKFVNGVLDKAAPVIRP 136 FG EDS +FVNGVL + ++ Sbjct: 130 KFGGEDSGRFVNGVLGGLSRSLKT 153 >UniRef50_C4DFR3 Transcription antitermination factor NusB n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DFR3_9ACTO Length = 147 Score = 122 bits (306), Expect = 5e-27, Method: Composition-based stats. Identities = 44/134 (32%), Positives = 67/134 (50%), Gaps = 7/134 (5%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFL----AEQDVKDVDVLYFRELLAGVATNTA 60 ARR+AR+ AV LY + I V + + + Y EL+ GVA Sbjct: 11 ARRKARKRAVDVLYEAEQRDEPIRRVLEDRRKLAVTDPQMPGI-PEYTFELVDGVAEYLD 69 Query: 61 YLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 +D ++ L L+ + V++ +LR+A +EL R DV VAI+EA+++A+ ED Sbjct: 70 EVDDVIARCLHSGWYLDRIAAVDRNILRVAAFELRYREDVDAAVAISEAVKIAEVLCGED 129 Query: 119 SHKFVNGVLDKAAP 132 S FVNGVL + Sbjct: 130 SPAFVNGVLQSVSE 143 >UniRef50_B1C650 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C650_9FIRM Length = 132 Score = 122 bits (306), Expect = 5e-27, Method: Composition-based stats. Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 2/130 (1%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R AR+ + ++ +D A+ Q + + +K Y ++ + G+ N +D Sbjct: 3 RDVARDLVYKIIFQINF-HDDFAERYEQMILDSGIKGTQGEYAKKTVKGILDNLEEIDDT 61 Query: 66 MKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 +K L E L AVLR+ ++E+ D+P V +NEA+ LA ++ E FVN Sbjct: 62 IKDNLKGWKFERLSTHVIAVLRLGVFEIMYNEDIPPLVGLNEAVSLAHTYSDEKEATFVN 121 Query: 125 GVLDKAAPVI 134 G+L+ + Sbjct: 122 GLLNSVYKKV 131 >UniRef50_B0VJ63 N utilization substance protein B n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VJ63_9BACT Length = 153 Score = 122 bits (306), Expect = 5e-27, Method: Composition-based stats. Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 15/145 (10%) Query: 4 AARRRARECAVQALYSWQLSQ-----------NDIADVEYQFLAEQDVKDVD--VLYFRE 50 RR+ARE AVQ LYS + S+ N+ D+ + ++ + E Sbjct: 2 GQRRKAREMAVQCLYSLEFSEVEKDYREYGLLNEYPDILLSLAEAEHIQPNSPVYAFADE 61 Query: 51 LLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIE 109 L+ N ++ + LE++ +++++L +A YEL +D P V INEAIE Sbjct: 62 LVKNTIINIEQVESEIDKLSDNWELEDIALLDRSILCLAAYELLF-TDTPAPVVINEAIE 120 Query: 110 LAKSFGAEDSHKFVNGVLDKAAPVI 134 +AK F +E S KF+NG+LD I Sbjct: 121 IAKKFSSEASGKFINGILDALNKEI 145 >UniRef50_C3XHP1 Predicted protein n=1 Tax=Helicobacter bilis ATCC 43879 RepID=C3XHP1_9HELI Length = 368 Score = 122 bits (306), Expect = 5e-27, Method: Composition-based stats. Identities = 42/131 (32%), Positives = 71/131 (54%), Gaps = 2/131 (1%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 A R++ARE +Q LY+ +L + + FL Q +++ + LL G+ + Sbjct: 2 ATRKQAREAIIQILYAKELGNDKAIEQAEAFLNAQKIRNKQQDFALNLLHGICNEERKIA 61 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ +L L LG +EK ++++ +YEL +++ V INEAIEL KSF +D+ + Sbjct: 62 DIINVFLKSWDLSRLGVIEKNIIKLGVYELL-QTNTQKAVIINEAIELTKSFNVQDAFRL 120 Query: 123 VNGVLDKAAPV 133 VNG+LD A Sbjct: 121 VNGILDSVAKT 131 >UniRef50_C1TMF2 Transcription antitermination factor NusB n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TMF2_9BACT Length = 143 Score = 121 bits (304), Expect = 7e-27, Method: Composition-based stats. Identities = 43/135 (31%), Positives = 73/135 (54%), Gaps = 2/135 (1%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 + RARE A+Q LYS +++ A+ + +D DV+ R L+ GV + +D L Sbjct: 10 KHRAREVALQLLYSMDVTKKHDAEKALNDFSFEDEIDVETG-VRALVLGVMDHLGEIDNL 68 Query: 66 MKPYLSRLL-EELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + + + + V++A +R+A+YE VP VAI+EA+EL K FG ++S +FVN Sbjct: 69 INVNVVGWRGDRMVAVDRAAIRLAVYEGLIARVVPVPVAISEAVELVKVFGTDESGRFVN 128 Query: 125 GVLDKAAPVIRPNKK 139 G L + + + + Sbjct: 129 GALARIVRAMPEDDE 143 >UniRef50_C2BWJ7 Possible transcription antitermination protein NusB n=1 Tax=Mobiluncus curtisii ATCC 43063 RepID=C2BWJ7_9ACTO Length = 191 Score = 121 bits (304), Expect = 8e-27, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 5/134 (3%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFL----AEQDVKDVDVLYFRELLAGVAT 57 K R R R AV LY + D + + E + Y E+L GVA Sbjct: 4 KLPRRTRERVRAVDVLYEAHVRGWDTPEGIFSLSQLRQDETTAQTPLPAYAVEILEGVAE 63 Query: 58 NTAYLDGLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 + +D + Y L + +V+ A++R+A +E+ DV VAI A+++A+ Sbjct: 64 HLERIDAALATYSKAWPLHRMPEVDLAIMRVAAWEILFNPDVTGPVAITAAMQIAEERST 123 Query: 117 EDSHKFVNGVLDKA 130 ++S KF+NG+L Sbjct: 124 DESPKFINGLLGAI 137 >UniRef50_B6BUY9 Transcription antitermination factor NusB n=1 Tax=beta proteobacterium KB13 RepID=B6BUY9_9PROT Length = 127 Score = 120 bits (303), Expect = 1e-26, Method: Composition-based stats. Identities = 42/122 (34%), Positives = 72/122 (59%) Query: 14 VQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL 73 ++++Y ++ D D++ L + D D ++ L+ G+ N + + ++ + Sbjct: 1 MKSIYRGIMNTFDYTDIKKDILEDPDYCRCDEEFYNSLIDGIKENYQEILEDLDNFMDKK 60 Query: 74 LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPV 133 EEL +E ++L +A YEL R D+P+KV+INEA+E+ KSFG ++S KFVNG LD+ A Sbjct: 61 KEELNPIELSILVVAYYELKTRVDIPFKVSINEALEITKSFGGQESFKFVNGSLDRVAKK 120 Query: 134 IR 135 R Sbjct: 121 YR 122 >UniRef50_Q2J830 N utilization substance protein B homolog n=3 Tax=Frankia RepID=NUSB_FRASC Length = 135 Score = 120 bits (303), Expect = 1e-26, Method: Composition-based stats. Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 3/112 (2%) Query: 22 LSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQV 80 + + + ++ LA+ D + Y EL+ GV +D + Y LE + V Sbjct: 1 MRASAVPEILAARLAQSDPPVSE--YAVELVEGVVERRGEIDERIARYAEGWTLERMPPV 58 Query: 81 EKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAP 132 ++ +LRIA+ EL R DVP +VAI+EA+ELAK+ S FVNG+L Sbjct: 59 DRNILRIAVLELLWRPDVPDRVAIDEAVELAKNLSTHRSPAFVNGLLASLVE 110 >UniRef50_B3EF03 Sun protein n=11 Tax=Chlorobiaceae RepID=B3EF03_CHLL2 Length = 451 Score = 120 bits (303), Expect = 1e-26, Method: Composition-based stats. Identities = 34/125 (27%), Positives = 56/125 (44%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 +RE A++ L + + + ++ L+ + D EL+ GV LD + Sbjct: 9 SRELALKVLQNIESGEKKSGTALHEQLSHTSLNQNDRALATELVNGVLRRRLTLDTFIGR 68 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 Y E+ V K +LRI Y+L +P+ A+NE++ LA+ + E K VN VL Sbjct: 69 YYHHRYEKAAPVLKNILRIGAYQLIYLDRIPHWAAVNESVSLARRYKGEHMAKLVNAVLR 128 Query: 129 KAAPV 133 P Sbjct: 129 NITPE 133 >UniRef50_Q4FPZ1 N utilization substance protein B homolog n=19 Tax=Moraxellaceae RepID=NUSB_PSYA2 Length = 375 Score = 120 bits (303), Expect = 1e-26, Method: Composition-based stats. Identities = 47/145 (32%), Positives = 75/145 (51%), Gaps = 13/145 (8%) Query: 7 RRARECAVQALYSWQLSQ-------------NDIADVEYQFLAEQDVKDVDVLYFRELLA 53 R+AR A+Q LY W ++ N D+ + A + V + Y+ E++ Sbjct: 52 RKARRFAMQGLYEWLVTDRRFDIDGKLGWKANAPHDIAARTRATNAMHTVHIGYYHEMMR 111 Query: 54 GVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKS 113 + L+ L+ L R + +L VE A+L I YEL R ++PYKV ++EA++L Sbjct: 112 DIPEQIDALNTLITQQLDREINKLDTVEHAILLIGAYELQNRLEIPYKVVLDEAMKLNNH 171 Query: 114 FGAEDSHKFVNGVLDKAAPVIRPNK 138 FGA D+HK +N VLD+ A +R + Sbjct: 172 FGATDAHKLINAVLDRMAVELRAPE 196 >UniRef50_B9E100 N utilization substance protein B homolog n=14 Tax=Clostridium RepID=NUSB_CLOK1 Length = 156 Score = 120 bits (302), Expect = 1e-26, Method: Composition-based stats. Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 21/149 (14%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAE--------------------QDVKDVDV 45 R++ RE ++ L+ +++ + D+K++D+ Sbjct: 3 RKKTRELTMKLLFQMAINKEKADVIISNLKENIEMEQGSQKNSISQIYGENMGDLKNIDI 62 Query: 46 LYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAI 104 Y +L G+ N L+ ++ YL L L +V+ A+L+I YE D+P KV+I Sbjct: 63 DYVVRVLRGIEKNEDMLNIEIEKYLRNWKLNRLSKVDSAILKICTYEFLHEDDIPEKVSI 122 Query: 105 NEAIELAKSFGAEDSHKFVNGVLDKAAPV 133 NEAIELAK + +E S F+NGVL Sbjct: 123 NEAIELAKKYSSEKSASFINGVLGNMIKD 151 >UniRef50_B3QZ49 Sun protein n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QZ49_CHLT3 Length = 443 Score = 120 bits (302), Expect = 1e-26, Method: Composition-based stats. Identities = 35/129 (27%), Positives = 61/129 (47%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 +ARE AVQAL +++ F + ++ VD + +++ G +D ++K Sbjct: 3 KAREIAVQALREVEVNHAKSDTALNHFFSITALEPVDRAFTMQIVYGTLREKMKIDHVIK 62 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 + +++ K +LRI Y+L S VP A+NE++ELAK + VNGVL Sbjct: 63 QFYRHDYDKMDIDVKNILRIGAYQLLFLSKVPRWAAVNESVELAKKLKGQFLGNLVNGVL 122 Query: 128 DKAAPVIRP 136 + + Sbjct: 123 RNISNNLES 131 >UniRef50_C5RKK7 NusB antitermination factor n=1 Tax=Clostridium cellulovorans 743B RepID=C5RKK7_CLOCL Length = 134 Score = 120 bits (302), Expect = 1e-26, Method: Composition-based stats. Identities = 42/131 (32%), Positives = 73/131 (55%), Gaps = 6/131 (4%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLA-----EQDVKDVDVLYFRELLAGVATNTA 60 RR+ RE A++ YS + Q D V F ++D+KDVD + +L+G++ N + Sbjct: 3 RRKTREIAIKLTYSLMIQQIDYKTVIENFKEVEDKEDEDLKDVDFTFVETILSGISENKS 62 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 + L+ L L + ++ A+L +A+YE+ D+P V+INEA+E+AK + + + Sbjct: 63 NYEELVSQNLIGWKLNRISKLNLAILLVAIYEIKNIDDIPKAVSINEAVEIAKKYSDDKA 122 Query: 120 HKFVNGVLDKA 130 F+N +LDK Sbjct: 123 PNFINSILDKI 133 >UniRef50_A3UCC3 Transcription antitermination protein NusB n=1 Tax=Oceanicaulis alexandrii HTCC2633 RepID=A3UCC3_9RHOB Length = 158 Score = 120 bits (302), Expect = 1e-26, Method: Composition-based stats. Identities = 41/132 (31%), Positives = 59/132 (44%), Gaps = 10/132 (7%) Query: 14 VQALYSWQLSQNDIADVEYQFLAEQ--------DVKDVDVLYFRELLAGVATNTAYLDGL 65 VQALY + S + V +F + D + D +F L+ G+ + A +D Sbjct: 25 VQALYQMETSGSGAKAVVKEFRDHRFGYEDEPGDYVETDEDFFENLVTGIVSIQADVDKR 84 Query: 66 MKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 + L L L +A+LR YEL R DVP V INE +++A +F FV Sbjct: 85 ISGVLKEGWKLSRLDATVRAILRAGGYELIARKDVPPAVVINEYVDVAHAFFEGTEPGFV 144 Query: 124 NGVLDKAAPVIR 135 N LD A +R Sbjct: 145 NATLDALAKQVR 156 >UniRef50_O66530 N utilization substance protein B homolog n=3 Tax=Aquificaceae RepID=NUSB_AQUAE Length = 148 Score = 120 bits (301), Expect = 2e-26, Method: Composition-based stats. Identities = 36/131 (27%), Positives = 67/131 (51%), Gaps = 4/131 (3%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDV-LYFRELLAGVATNTAYLDG 64 R+ AR+ A LY W L + ++ + + E+++K+ D Y ++L+ + +D Sbjct: 4 RKGARDTAFLVLYRWDLRGENPGELFKEVVEEKNIKNKDAYEYAKKLVDTAVRHIEEIDS 63 Query: 65 LMKPYLSRL-LEELGQVEKAVLRIALYELSKRS-DVPYKVAINEAIELAKSFGAEDSHKF 122 +++ +L ++ LG VE+ LR+ + EL P +V I+ ++L K + E + KF Sbjct: 64 IIEKHLKGWSIDRLGYVERNALRLGVAELIFLKSKEPGRVFID-IVDLVKKYADEKAGKF 122 Query: 123 VNGVLDKAAPV 133 VNGVL Sbjct: 123 VNGVLSAIYKA 133 >UniRef50_D1BMC4 Sun protein n=3 Tax=Veillonella RepID=D1BMC4_VEIPT Length = 451 Score = 120 bits (301), Expect = 2e-26, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 63/133 (47%), Gaps = 1/133 (0%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 +K ++ R AV+AL + ++L + + D+D +F EL+ GV Sbjct: 4 VKTNQQQNIRLLAVKALSEINRNGAYANIKLQEYLQKYHLSDLDRRFFTELVYGVIRRKN 63 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 YLD ++ + R +++L + +LR+ +Y++ VP A+NE+++LAK Sbjct: 64 YLDAIIVFFAKRPIKKLSSMVLEILRLGIYQIIYMDKVPESAAVNESVKLAKKL-TRGLS 122 Query: 121 KFVNGVLDKAAPV 133 FVN VL Sbjct: 123 GFVNAVLRSVLRE 135 >UniRef50_Q18B61 N utilization substance protein B homolog n=6 Tax=Clostridiales RepID=NUSB_CLOD6 Length = 169 Score = 119 bits (300), Expect = 3e-26, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 74/167 (44%), Gaps = 34/167 (20%) Query: 1 MKP--AARRRARECAVQALYSWQLSQNDIADVEYQF------------------------ 34 MK A + RE ++ +Y +++ D +E + Sbjct: 2 MKKDRAQKSTTREYIMKLIYQININKEDFETLEDKVDNFLKDNSEHIINRYKELALQYSK 61 Query: 35 -----LAEQDVKDV-DVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRI 87 L + +++DV D Y + + N +D L+ + ++ + +V+ ++LR+ Sbjct: 62 NTNLKLEDTEIEDVIDKKYINTVCKALKENHDKIDELINKHAKNWTVDRMPKVDVSILRL 121 Query: 88 ALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVI 134 ++ E+ D P KV+INEA+ELAK + + S KF+NG+L I Sbjct: 122 SVCEILYL-DTPNKVSINEAVELAKIYCDDKSPKFINGILGSVVDEI 167 >UniRef50_C5VC90 Transcription antitermination factor NusB n=2 Tax=Corynebacterium matruchotii RepID=C5VC90_9CORY Length = 312 Score = 119 bits (299), Expect = 3e-26, Method: Composition-based stats. Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 6/132 (4%) Query: 14 VQALYSWQLSQNDIADVEYQFLAEQDVK----DVDVLYFRELLAGVATNTAYLDGLMKPY 69 V LY + D + + V Y E++AGVA +D ++ Y Sbjct: 34 VDVLYEAEARDVDPVAIVEDRINLARVDITLVAPIAAYTSEIIAGVAEELNRIDDVIAEY 93 Query: 70 L--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 L + L + V++A+LR+A++E+ DVP K A++EA+ELA + + ++N VL Sbjct: 94 LAENWELSRISAVDRAILRVAVWEMIFNPDVPVKTALSEAVELASQYSGASAPAYINAVL 153 Query: 128 DKAAPVIRPNKK 139 D I ++ Sbjct: 154 DSVVKNIDDLRR 165 >UniRef50_A7VUU4 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VUU4_9CLOT Length = 446 Score = 119 bits (299), Expect = 3e-26, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 56/130 (43%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +A + AR A++AL + + V LA + D + L GV LD Sbjct: 2 SAGKNARLTALKALLRVEEGKGYSNLVLDHGLAASGLDGRDAAFASALFYGVLERRITLD 61 Query: 64 GLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 + Y L ++ + +LR+ Y+L VP A+NE+++L ++ + + FV Sbjct: 62 YQISRYSKMPLSQMAAPVREILRLGFYQLLYMDKVPQSAAVNESVKLTRAVKKDKASGFV 121 Query: 124 NGVLDKAAPV 133 NG+L Sbjct: 122 NGILRSFIRD 131 >UniRef50_Q72JL6 N utilization substance protein B homolog n=3 Tax=Thermus RepID=NUSB_THET2 Length = 151 Score = 119 bits (299), Expect = 3e-26, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 70/143 (48%), Gaps = 11/143 (7%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAE---------QDVKDVDVLYFRELLAGVA 56 RRRARE A++AL++ + + + L E + + V + R LL+G Sbjct: 2 RRRARELAMRALFAHTVGGMGLEEAFQHALEEMGGEEEGYAEPLDQEGVAFARRLLSGYK 61 Query: 57 TNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG 115 + +D +++ + ++ + + AVLR+A+YE+ P++ I A+++A +G Sbjct: 62 AHQEEVDRVLEETVEGWDFRQMAKTDLAVLRLAVYEMLYEP-TPFEPLIEVAVKIANRYG 120 Query: 116 AEDSHKFVNGVLDKAAPVIRPNK 138 E S FVNGVL + + + Sbjct: 121 GEHSGSFVNGVLARVYRRVAAGE 143 >UniRef50_C9LLB0 Transcription antitermination factor NusB n=1 Tax=Dialister invisus DSM 15470 RepID=C9LLB0_9FIRM Length = 133 Score = 119 bits (299), Expect = 3e-26, Method: Composition-based stats. Identities = 40/129 (31%), Positives = 69/129 (53%), Gaps = 6/129 (4%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 +R +ARE A++ LY+ +++ N E + + + L+ V + +DG Sbjct: 2 SRSKAREHALKVLYAKEINPNT---AELSADISDALSEKGKSFSDFLVEQVQLHRDEIDG 58 Query: 65 LMKPYLSRL-LEELGQVEKAVLRIALYEL--SKRSDVPYKVAINEAIELAKSFGAEDSHK 121 + +L + L +L V+K +LRIA+ E + KV INEA+ELAK +G E+S++ Sbjct: 59 EIVRFLKKWSLSQLNIVDKNILRIAIAEFNYTYEDKADRKVIINEAVELAKVYGGENSYR 118 Query: 122 FVNGVLDKA 130 F+NG+L Sbjct: 119 FINGILSAV 127 >UniRef50_C8PI00 Transcription antitermination factor NusB n=1 Tax=Campylobacter gracilis RM3268 RepID=C8PI00_9PROT Length = 342 Score = 119 bits (299), Expect = 3e-26, Method: Composition-based stats. Identities = 44/128 (34%), Positives = 67/128 (52%), Gaps = 5/128 (3%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 A R +AR A+ LYS ++ D ++L E+ +++ + LL G + N A +D Sbjct: 2 ATRHQARLAAISLLYSRDMNGGG-EDFADEYLEEKRIRNEQRNWTLALLRGASENLAAVD 60 Query: 64 GLMKPYLSR-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 L+ L L E+ +E+A+LR+ YEL +D + INEAI AK G S +F Sbjct: 61 ALIDENLKEFKLAEISALERAILRLGAYELRF-TDTDAGIVINEAINSAKELGI--SPRF 117 Query: 123 VNGVLDKA 130 +NGVLD Sbjct: 118 INGVLDAL 125 >UniRef50_Q01T72 N utilization substance protein B homolog n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=NUSB_SOLUE Length = 146 Score = 119 bits (299), Expect = 3e-26, Method: Composition-based stats. Identities = 37/125 (29%), Positives = 65/125 (52%), Gaps = 6/125 (4%) Query: 14 VQALYSWQLSQNDIADVE---YQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL 70 +Q L+ W + + D Y L + + D + +L+ G + A +D + + Sbjct: 12 LQILFIWDARKQPVEDAINAYYDTLYSDEKPERD-PFVIDLVRGTVEHLAEVDDRITRHA 70 Query: 71 SRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 +E + V++ +LR+A+YE++ R P V I+EA+ELA+ F E+S +FVNGVLD Sbjct: 71 EHWRMERMPAVDRNILRLAVYEMT-RGGTPAPVTIDEALELARKFSNEESVQFVNGVLDA 129 Query: 130 AAPVI 134 + Sbjct: 130 VRREM 134 >UniRef50_B6IMS4 Transcription antitermination protein NusB, putative n=1 Tax=Rhodospirillum centenum SW RepID=B6IMS4_RHOCS Length = 179 Score = 119 bits (299), Expect = 3e-26, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 10/135 (7%) Query: 14 VQALYSWQLSQNDIADVEYQFLAEQDVKD--------VDVLYFRELLAGVATNTAYLDGL 65 VQALY +L +F+ + ++ D F +++ GV A +D L Sbjct: 37 VQALYQIELGGTPSETAIGEFVRHRLGQEIDGDRYVSADPQLFADIVRGVMARQADVDQL 96 Query: 66 MKPYLSRL--LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 + L R L+ + + +A+LR +EL + V + IN+ I++ +F A V Sbjct: 97 VTGVLDRQWGLDRMEPILRAILRAGAWELLGNTGVAPHIVINDYIDVGHAFFAGREPGMV 156 Query: 124 NGVLDKAAPVIRPNK 138 NGVLD+ A +RP + Sbjct: 157 NGVLDRIARQLRPEE 171 >UniRef50_D0LCQ6 Transcription antitermination factor NusB n=3 Tax=Actinomycetales RepID=D0LCQ6_GORB4 Length = 163 Score = 118 bits (298), Expect = 4e-26, Method: Composition-based stats. Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 5/136 (3%) Query: 1 MK-PAARRRARECAVQALYSWQLSQNDIADVEYQFLA---EQDVKDVDVLYFRELLAGVA 56 MK P R +AR AV L+ + Q A + + + Y ++ G+A Sbjct: 1 MKQPGTRHKARRRAVDILFEAEAKQVSPAQLVAERRELVRSDESVGAIHDYTARVIEGLA 60 Query: 57 TNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG 115 + +D ++ +L L L V++A+LR+A +EL DV V ++EA+ELAK Sbjct: 61 DDQEQIDSVISSHLREWTLPRLPAVDRAILRLATWELFNSVDVDTVVIVDEAVELAKELS 120 Query: 116 AEDSHKFVNGVLDKAA 131 +DS FVNGVL K A Sbjct: 121 TDDSPAFVNGVLAKIA 136 >UniRef50_A8MH88 Sun protein n=7 Tax=Clostridiaceae RepID=A8MH88_ALKOO Length = 445 Score = 118 bits (298), Expect = 4e-26, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 1/121 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 RE A++ LY +++ + L + +D EL+ GV N Y+D ++ + Sbjct: 4 REGALKVLYEINVNEAFSNIALNKELNNESYNLLDRNLLTELVYGVLENQIYIDHVLSQF 63 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 + L+++ +LR+ +Y+L VP A+NE + L+K + + + F+NGVL Sbjct: 64 SNFQLDKMNPYTLNLLRLGIYQLLFLDRVPSFAAVNETVNLSKKYC-KKTTGFINGVLRN 122 Query: 130 A 130 Sbjct: 123 V 123 >UniRef50_UPI0001699525 transcription antitermination protein NusB n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001699525 Length = 182 Score = 118 bits (297), Expect = 5e-26, Method: Composition-based stats. Identities = 44/99 (44%), Positives = 65/99 (65%), Gaps = 4/99 (4%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R +AR AVQA+Y WQ++ D+A + QFL EQD+ +V YF++LL GV N LDGL Sbjct: 5 RSQARRHAVQAIYQWQMAGQDLAAIYEQFLGEQDLSQFEVPYFKDLLHGVPNNLQELDGL 64 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAI 104 +KP L R +E + VE+AVLR+ +Y++ + P+ A+ Sbjct: 65 LKPALDRAIESVDPVERAVLRLGVYDV----ETPHGGAL 99 >UniRef50_Q0SP57 N utilization substance protein B homolog n=43 Tax=Borrelia RepID=NUSB_BORAP Length = 137 Score = 118 bits (296), Expect = 6e-26, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 71/134 (52%), Gaps = 6/134 (4%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVD----VLYFRELLAGVATNTAYL 62 R A Q +YS ++Q+ + D+ F E D++ ++ L+ G N ++ Sbjct: 2 HEVRVLAFQKIYSIDINQSAMDDIFDIFNIEDKGLDIENESIKSFYSSLVNGTFNNLEHI 61 Query: 63 DGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRS-DVPYKVAINEAIELAKSFGAEDSH 120 D L++ L+ + +V+ A+LR+ +Y L ++ + + I++AI +AK +G+++S Sbjct: 62 DSLIRDISWNWSLDRMDKVDLAILRMGVYSLKFQNFENSKRAVIDDAILIAKKYGSKNSC 121 Query: 121 KFVNGVLDKAAPVI 134 KF+NG+LD + Sbjct: 122 KFINGILDALLKNM 135 >UniRef50_A8FD39 rRNA SAM-dependent methyltransferase RmsB n=3 Tax=Bacillaceae RepID=A8FD39_BACP2 Length = 447 Score = 118 bits (296), Expect = 6e-26, Method: Composition-based stats. Identities = 36/133 (27%), Positives = 64/133 (48%), Gaps = 4/133 (3%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK + RE A+ AL + +Q + + ++D+ D D EL+ G N Sbjct: 1 MKKSN---VREVALDALIKLEQNQAYSNLLLQSVMKDKDLADQDKPLLTELVYGTLQNKL 57 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD ++ P++ + +++ +LR++LY++ +P + AI+EA+EL K G + Sbjct: 58 ALDYMLAPFVKKP-QKVAPWVMQLLRMSLYQMVYLEKIPDRAAIHEAVELTKKRGHKGIS 116 Query: 121 KFVNGVLDKAAPV 133 VNGVL Sbjct: 117 SLVNGVLRSVQRE 129 >UniRef50_C4GAK6 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GAK6_9FIRM Length = 152 Score = 118 bits (296), Expect = 7e-26, Method: Composition-based stats. Identities = 44/150 (29%), Positives = 72/150 (48%), Gaps = 21/150 (14%) Query: 2 KPAARRRARECAVQALY------------SWQLSQNDIADVEYQFLAEQDVKDV----DV 45 K RR+ RE A + L+ L D ++E L E++ + D Sbjct: 4 KTMIRRQIRETAFRILFVLNFCPADQMQDQLNLYFTDHTELEIDDLTEEEDQKAVIRLDQ 63 Query: 46 LYFREL---LAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYK 101 + E+ G A + +D +++ L L +V+ +LR+A+YE+ ++P Sbjct: 64 ASWPEITAKCLGAAGHLPEIDRIIEESSEGWKLSRLTKVDLTLLRLAVYEMKF-ENLPSG 122 Query: 102 VAINEAIELAKSFGAEDSHKFVNGVLDKAA 131 +AINEA+ELAK +G + S FVNGVL K + Sbjct: 123 IAINEAVELAKRYGTDKSPAFVNGVLAKIS 152 >UniRef50_B1N082 Transcription termination factor n=3 Tax=Leuconostoc RepID=B1N082_LEUCK Length = 140 Score = 118 bits (296), Expect = 7e-26, Method: Composition-based stats. Identities = 49/138 (35%), Positives = 75/138 (54%), Gaps = 9/138 (6%) Query: 1 MKPAARRRARECAVQALYSWQL--SQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATN 58 M R +R+ A Q L++ + N+I + L +D D Y L+ G+ N Sbjct: 1 MANLTRHESRQAAFQILFALEKDPQNNNIDRLYDIVLEGKDFDD----YLPRLVNGILGN 56 Query: 59 TAYLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 LD + +L+ + + + + +LR+A+YELS++ VPYKVAI+EA+ LAK+F Sbjct: 57 KIDLDAQISEHLAAGWAIARINKADLVILRLAIYELSQQL-VPYKVAIDEALILAKTFAD 115 Query: 117 EDSHKFVNGVLDKAAPVI 134 ED KFVNGVL AP + Sbjct: 116 EDDRKFVNGVLKNFAPKV 133 >UniRef50_UPI0000D5356A transcription termination factor (NusB) n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D5356A Length = 127 Score = 117 bits (295), Expect = 9e-26, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 3/120 (2%) Query: 14 VQALYSWQLSQND--IADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLS 71 +Q LY ++ ++F + K + EL+ G+A +D ++ L Sbjct: 1 MQFLYGNEIQGETEITDGKLHEFWELRLTKTFARDFAAELVKGIARELPLIDEAIEDSLE 60 Query: 72 R-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 L V++ +LR+A YE+ +P + AINEAIE+AK G+EDS F+NG+LD+ Sbjct: 61 NYSFGRLANVDRNILRLATYEILFADHIPGQAAINEAIEVAKRLGSEDSPSFINGILDRI 120 >UniRef50_C5R7W5 Transcription antitermination protein NusB n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5R7W5_WEIPA Length = 139 Score = 117 bits (295), Expect = 1e-25, Method: Composition-based stats. Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 7/135 (5%) Query: 1 MKPAARRRARECAVQALYSWQLSQN-DIADVEYQFLAEQDV---KDVDVLYFRELLAGVA 56 M R + R+ A Q+L+ L+ D+ Q L +D ++ GV Sbjct: 1 MTELNRHQIRQAAFQSLFGLALNPTADVDTTITQVLVGDPEIAWEDEIPADLTSVVLGVV 60 Query: 57 TNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 LD ++ +L L+ L + ++R+ALYE +DVP K+A+NEA++LA F Sbjct: 61 AKQDELDLMITDHLSSDWTLDRLNTTDLVLMRLALYEAKF-TDVPAKIAVNEALQLAHDF 119 Query: 115 GAEDSHKFVNGVLDK 129 + S KF+NG+L+K Sbjct: 120 TDDKSRKFINGILNK 134 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_A4VHT5 N utilization substance protein B homolog n=23 T... 174 9e-43 UniRef50_A7ZIG9 N utilization substance protein B homolog n=118 ... 168 4e-41 UniRef50_Q48DC2 N utilization substance protein B homolog n=51 T... 165 3e-40 UniRef50_Q1IFL9 N utilization substance protein B homolog n=12 T... 165 4e-40 UniRef50_C5BS84 N utilization substance protein B homolog n=2 Ta... 163 2e-39 UniRef50_C9R7W0 NusB antitermination factor n=1 Tax=Ammonifex de... 159 2e-38 UniRef50_Q0AD60 N utilization substance protein B homolog n=3 Ta... 157 1e-37 UniRef50_A3DDP0 N utilization substance protein B homolog n=5 Ta... 156 2e-37 UniRef50_Q2YD50 N utilization substance protein B homolog n=4 Ta... 155 3e-37 UniRef50_A5D1B7 tRNA and rRNA cytosine-C5-methylases n=6 Tax=Clo... 155 4e-37 UniRef50_Q21F20 N utilization substance protein B homolog n=5 Ta... 155 5e-37 UniRef50_Q31FT2 N utilization substance protein B homolog n=1 Ta... 155 5e-37 UniRef50_A1W9I4 N utilization substance protein B homolog n=6 Ta... 155 6e-37 UniRef50_C7HWX1 NusB antitermination factor n=1 Tax=Thiomonas in... 154 7e-37 UniRef50_A7C6S2 Transcription antitermination protein NusB n=1 T... 154 7e-37 UniRef50_B6IZ82 N utilization substance protein B homolog n=6 Ta... 154 9e-37 UniRef50_C0GMV1 NusB antitermination factor n=1 Tax=Desulfonatro... 153 1e-36 UniRef50_Q493G9 N utilization substance protein B homolog n=3 Ta... 153 2e-36 UniRef50_A7VUU4 Putative uncharacterized protein n=1 Tax=Clostri... 152 3e-36 UniRef50_Q0K7T8 N utilization substance protein B homolog n=70 T... 152 3e-36 UniRef50_D1BMC4 Sun protein n=3 Tax=Veillonella RepID=D1BMC4_VEIPT 152 3e-36 UniRef50_D0L1W4 NusB antitermination factor n=1 Tax=Halothiobaci... 152 3e-36 UniRef50_B3U4H5 Transcription antitermination protein n=1 Tax=Ca... 152 4e-36 UniRef50_A5D319 N utilization substance protein B homolog n=3 Ta... 152 4e-36 UniRef50_Q3JCY0 N utilization substance protein B homolog n=2 Ta... 152 4e-36 UniRef50_B3DWQ3 N utilization substance protein B homolog n=1 Ta... 152 5e-36 UniRef50_A8FF16 N utilization substance protein B homolog n=28 T... 152 5e-36 UniRef50_A3DCX8 Sun protein n=5 Tax=Clostridium RepID=A3DCX8_CLOTH 152 5e-36 UniRef50_B0TEI6 N utilization substance protein B homolog n=1 Ta... 151 7e-36 UniRef50_A0L3Z8 NusB antitermination factor n=1 Tax=Magnetococcu... 151 7e-36 UniRef50_C0N8C8 Transcription antitermination factor NusB n=1 Ta... 150 9e-36 UniRef50_A9BVN7 N utilization substance protein B homolog n=7 Ta... 150 1e-35 UniRef50_B8FJ78 N utilization substance protein B homolog n=2 Ta... 150 1e-35 UniRef50_A8FD39 rRNA SAM-dependent methyltransferase RmsB n=3 Ta... 150 1e-35 UniRef50_B0UU23 N utilization substance protein B homolog n=33 T... 150 1e-35 UniRef50_Q479L3 N utilization substance protein B homolog n=3 Ta... 150 1e-35 UniRef50_Q67NA9 N utilization substance protein B homolog n=2 Ta... 150 2e-35 UniRef50_Q1PUX1 Putative uncharacterized protein n=1 Tax=Candida... 150 2e-35 UniRef50_C6X9V7 NusB antitermination factor n=1 Tax=Methylovorus... 150 2e-35 UniRef50_C6WU13 NusB antitermination factor n=1 Tax=Methylotener... 148 5e-35 UniRef50_Q2BM00 NusB protein n=1 Tax=Neptuniibacter caesariensis... 148 5e-35 UniRef50_B8D9P0 N utilization substance protein B homolog n=5 Ta... 148 5e-35 UniRef50_C5TIT6 Transcription antitermination factor NusB n=5 Ta... 148 6e-35 UniRef50_A8PLC7 Transcription antitermination factor NusB n=1 Ta... 148 7e-35 UniRef50_Q1N2N9 Transcription antitermination protein NusB n=1 T... 148 7e-35 UniRef50_B9L0C6 Transcription antitermination factor NusB n=2 Ta... 147 8e-35 UniRef50_B3QZ49 Sun protein n=1 Tax=Chloroherpeton thalassium AT... 147 9e-35 UniRef50_Q2RIA9 N utilization substance protein B homolog n=1 Ta... 147 9e-35 UniRef50_D2LH50 NusB antitermination factor n=1 Tax=Rhodomicrobi... 147 1e-34 UniRef50_B8FQ61 N utilization substance protein B homolog n=2 Ta... 147 1e-34 UniRef50_C4KD91 NusB antitermination factor n=1 Tax=Thauera sp. ... 147 1e-34 UniRef50_Q1D350 N utilization substance protein B homolog n=2 Ta... 147 1e-34 UniRef50_Q5X720 N utilization substance protein B homolog n=6 Ta... 147 1e-34 UniRef50_A5FQ51 N utilization substance protein B homolog n=5 Ta... 147 2e-34 UniRef50_C4ZEV6 Sun protein n=4 Tax=Clostridiales RepID=C4ZEV6_E... 146 2e-34 UniRef50_C8W0Z5 NusB antitermination factor n=1 Tax=Desulfotomac... 146 2e-34 UniRef50_A6W2L6 N utilization substance protein B homolog n=4 Ta... 146 2e-34 UniRef50_Q30YL1 N utilization substance protein B homolog n=5 Ta... 146 2e-34 UniRef50_Q1H424 N utilization substance protein B homolog n=2 Ta... 146 2e-34 UniRef50_C8WLN1 NusB antitermination factor n=2 Tax=Coriobacteri... 146 2e-34 UniRef50_B3QV72 N utilization substance protein B homolog n=1 Ta... 146 3e-34 UniRef50_D2RNU3 Sun protein n=3 Tax=Veillonellaceae RepID=D2RNU3... 145 4e-34 UniRef50_Q1ISD3 N utilization substance protein B homolog n=2 Ta... 145 4e-34 UniRef50_A5F5Z6 N utilization substance protein B homolog n=91 T... 145 4e-34 UniRef50_C7LSH4 NusB antitermination factor n=1 Tax=Desulfomicro... 145 4e-34 UniRef50_A8ZTU6 N utilization substance protein B homolog n=1 Ta... 145 5e-34 UniRef50_B5ELV9 NusB antitermination factor n=3 Tax=Acidithiobac... 145 6e-34 UniRef50_B0MGA0 Putative uncharacterized protein n=2 Tax=Clostri... 144 6e-34 UniRef50_C6D4F5 Sun protein n=87 Tax=Bacilli RepID=C6D4F5_PAESJ 144 6e-34 UniRef50_A6Q4Q9 N utilization substance protein B homolog n=20 T... 144 7e-34 UniRef50_Q3A4L2 N utilization substance protein B homolog n=2 Ta... 144 9e-34 UniRef50_A0Q099 N utilization substance protein B homolog n=3 Ta... 143 1e-33 UniRef50_UPI00006A2BCA UPI00006A2BCA related cluster n=1 Tax=Xen... 143 1e-33 UniRef50_A8MH88 Sun protein n=7 Tax=Clostridiaceae RepID=A8MH88_... 143 1e-33 UniRef50_B5JUN2 Transcription antitermination factor NusB n=1 Ta... 143 2e-33 UniRef50_C0GE32 NusB antitermination factor n=1 Tax=Dethiobacter... 143 2e-33 UniRef50_D1CCN3 NusB antitermination factor n=1 Tax=Thermobaculu... 143 2e-33 UniRef50_Q2RK22 Sun protein n=3 Tax=Clostridia RepID=Q2RK22_MOOTA 143 2e-33 UniRef50_D2L8L5 NusB antitermination factor n=1 Tax=Desulfovibri... 143 2e-33 UniRef50_Q3BXH9 N utilization substance protein B homolog n=20 T... 142 3e-33 UniRef50_C1DB31 N utilization substance protein B homolog n=3 Ta... 142 3e-33 UniRef50_B0S1M1 N utilization substance protein B homolog n=2 Ta... 142 3e-33 UniRef50_B0A9Y2 Putative uncharacterized protein n=2 Tax=Clostri... 142 3e-33 UniRef50_Q0AZF7 N utilization substance protein B homolog n=1 Ta... 142 3e-33 UniRef50_A0LI21 N utilization substance protein B homolog n=4 Ta... 142 3e-33 UniRef50_C4L3F7 N utilization substance protein B homolog n=2 Ta... 142 3e-33 UniRef50_B3EF03 Sun protein n=11 Tax=Chlorobiaceae RepID=B3EF03_... 142 4e-33 UniRef50_P94464 Ribosomal RNA small subunit methyltransferase B ... 142 4e-33 UniRef50_Q2LQK4 N utilization substance protein B homolog n=1 Ta... 142 5e-33 UniRef50_B1H071 Transcription antitermination factor NusB n=1 Ta... 141 7e-33 UniRef50_A6CAX2 Transcription antitermination protein NusB n=1 T... 140 9e-33 UniRef50_A9ET18 N utilization substance protein B homolog n=1 Ta... 140 1e-32 UniRef50_C5CI90 NusB antitermination factor n=1 Tax=Kosmotoga ol... 140 1e-32 UniRef50_C4FT85 Putative uncharacterized protein n=1 Tax=Catonel... 140 1e-32 UniRef50_A5G3J8 N utilization substance protein B homolog n=7 Ta... 140 2e-32 UniRef50_B1YIQ1 Sun protein n=2 Tax=Exiguobacterium RepID=B1YIQ1... 140 2e-32 UniRef50_UPI0001C42A93 transcription antitermination protein Nus... 140 2e-32 UniRef50_B2S4Q2 N utilization substance protein B homolog n=3 Ta... 140 2e-32 UniRef50_B1LAQ8 N utilization substance protein B homolog n=10 T... 140 2e-32 UniRef50_B4SCZ7 N utilization substance protein B homolog n=2 Ta... 140 2e-32 UniRef50_Q5WF59 N utilization substance protein B homolog n=2 Ta... 139 2e-32 UniRef50_UPI0001C36EDB sun protein n=1 Tax=Ruminococcus flavefac... 139 2e-32 UniRef50_C0EFK3 Putative uncharacterized protein n=1 Tax=Clostri... 139 3e-32 UniRef50_Q5F9Y0 N utilization substance protein B homolog n=22 T... 139 3e-32 UniRef50_D1VSJ6 Transcription antitermination factor NusB n=1 Ta... 139 3e-32 UniRef50_A6NUS8 Putative uncharacterized protein n=1 Tax=Bactero... 139 3e-32 UniRef50_Q136T4 N utilization substance protein B homolog n=36 T... 138 4e-32 UniRef50_UPI0001745093 NusB antitermination factor n=1 Tax=Verru... 138 4e-32 UniRef50_B1W456 N utilization substance protein B homolog n=7 Ta... 138 4e-32 UniRef50_B4D6X5 NusB antitermination factor n=1 Tax=Chthoniobact... 138 4e-32 UniRef50_A0Q113 Sun protein n=35 Tax=Clostridium RepID=A0Q113_CLONN 138 5e-32 UniRef50_C7N4M1 Transcription antitermination factor NusB n=1 Ta... 138 5e-32 UniRef50_C6CU26 NusB antitermination factor n=3 Tax=Bacillales R... 138 5e-32 UniRef50_Q6AP93 N utilization substance protein B homolog n=1 Ta... 138 6e-32 UniRef50_B8DJF1 N utilization substance protein B homolog n=2 Ta... 138 6e-32 UniRef50_B6WQ80 Putative uncharacterized protein n=1 Tax=Desulfo... 138 6e-32 UniRef50_C8PMR7 Transcription antitermination factor NusB n=1 Ta... 138 6e-32 UniRef50_B0K9D9 N utilization substance protein B homolog n=10 T... 138 7e-32 UniRef50_B1HQE5 Ribosomal RNA small subunit methyltransferase B ... 138 7e-32 UniRef50_B2KE32 N utilization substance protein B homolog n=1 Ta... 138 7e-32 UniRef50_A0LEK0 Sun protein n=1 Tax=Syntrophobacter fumaroxidans... 137 8e-32 UniRef50_C9RZP8 Sun protein n=5 Tax=Bacillales RepID=C9RZP8_GEOSY 137 9e-32 UniRef50_C5S6Y6 NusB antitermination factor n=1 Tax=Allochromati... 137 9e-32 UniRef50_Q5P3H4 N utilization substance protein B homolog n=9 Ta... 137 9e-32 UniRef50_C0WD86 SUN protein n=1 Tax=Acidaminococcus sp. D21 RepI... 137 1e-31 UniRef50_A7HDY2 N utilization substance protein B homolog n=4 Ta... 137 1e-31 UniRef50_Q3ATI5 N utilization substance protein B homolog n=9 Ta... 137 1e-31 UniRef50_B9L730 Transcription antitermination factor NusB n=2 Ta... 137 1e-31 UniRef50_Q6MNX9 N utilization substance protein B homolog n=1 Ta... 137 1e-31 UniRef50_P72943 Ribosomal RNA small subunit methyltransferase B ... 137 1e-31 UniRef50_B3QJK9 N utilization substance protein B homolog n=9 Ta... 136 2e-31 UniRef50_A1WVG0 N utilization substance protein B homolog n=1 Ta... 136 2e-31 UniRef50_B7IXH3 N utilization substance protein B homolog n=82 T... 136 2e-31 UniRef50_D1U9R7 NusB antitermination factor n=1 Tax=Desulfovibri... 136 2e-31 UniRef50_D0MK26 NusB antitermination factor n=1 Tax=Rhodothermus... 136 3e-31 UniRef50_B9M341 Sun protein n=4 Tax=Geobacter RepID=B9M341_GEOSF 135 3e-31 UniRef50_C5EIZ3 Putative uncharacterized protein n=2 Tax=Clostri... 135 3e-31 UniRef50_A8RWU3 Putative uncharacterized protein n=4 Tax=Clostri... 135 3e-31 UniRef50_C6PE58 NusB/RsmB/TIM44 protein n=1 Tax=Thermoanaerobact... 135 3e-31 UniRef50_D0BMY2 Ribosomal RNA small subunit methyltransferase B ... 135 3e-31 UniRef50_Q1NRI6 NusB antitermination factor n=1 Tax=delta proteo... 135 4e-31 UniRef50_C8WW78 Sun protein n=2 Tax=Alicyclobacillus acidocaldar... 135 4e-31 UniRef50_Q1MS16 N utilization substance protein B homolog n=1 Ta... 135 4e-31 UniRef50_C0ZC03 N utilization substance protein B n=1 Tax=Brevib... 135 4e-31 UniRef50_C4XHY8 N utilization substance protein B homolog n=1 Ta... 135 4e-31 UniRef50_Q2YYB7 N utilization substance protein B homolog n=59 T... 135 5e-31 UniRef50_A4TBX3 N utilization substance protein B homolog n=18 T... 135 6e-31 UniRef50_C6R1D5 Ribosomal RNA small subunit methyltransferase B ... 135 6e-31 UniRef50_UPI0001C335A0 ribosomal RNA small subunit methyltransfe... 135 6e-31 UniRef50_C4V0R0 rRNA SAM-dependent methyltransferase RmsB n=1 Ta... 134 7e-31 UniRef50_B8FHH2 Sun protein n=1 Tax=Desulfatibacillum alkenivora... 134 7e-31 UniRef50_C1QBG1 Transcription antitermination factor NusB n=1 Ta... 134 8e-31 UniRef50_Q03RR0 N utilization substance protein B homolog n=23 T... 134 9e-31 UniRef50_C9LLK5 Ribosomal RNA small subunit methyltransferase B ... 134 9e-31 UniRef50_B9LDT2 N utilization substance protein B homolog n=6 Ta... 134 1e-30 UniRef50_C6BYC6 NusB antitermination factor n=1 Tax=Desulfovibri... 134 1e-30 UniRef50_C0EY63 Putative uncharacterized protein n=1 Tax=Eubacte... 133 1e-30 UniRef50_B2A2K5 Sun protein n=1 Tax=Natranaerobius thermophilus ... 133 1e-30 UniRef50_C0W1K3 16S rRNA m(5)C 967 methyltransferase n=1 Tax=Act... 133 1e-30 UniRef50_A8ZUK3 Sun protein n=1 Tax=Desulfococcus oleovorans Hxd... 133 1e-30 UniRef50_Q0TPD3 N utilization substance protein B homolog n=10 T... 133 1e-30 UniRef50_B9XNZ3 NusB antitermination factor n=1 Tax=bacterium El... 133 1e-30 UniRef50_B8DTW1 N utilization substance protein B homolog n=16 T... 133 1e-30 UniRef50_B8ZUK7 N utilization substance protein B homolog n=16 T... 133 1e-30 UniRef50_B7DR17 NusB antitermination factor n=1 Tax=Alicyclobaci... 133 2e-30 UniRef50_D2NSI1 tRNA and rRNA cytosine-C5-methylase n=2 Tax=Micr... 133 2e-30 UniRef50_B3DQ30 N utilization substance protein B homolog n=7 Ta... 133 2e-30 UniRef50_A8VXB3 Acetyl-CoA carboxylase, biotin carboxyl carrier ... 133 2e-30 UniRef50_B2A534 N utilization substance protein B homolog n=1 Ta... 133 2e-30 UniRef50_C9L6W4 Ribosomal RNA small subunit methyltransferase B ... 133 2e-30 UniRef50_C0R001 Transcription antitermination protein NusB n=1 T... 132 3e-30 UniRef50_B8H535 N utilization substance protein B homolog n=4 Ta... 132 3e-30 UniRef50_Q1AW09 N utilization substance protein B homolog n=1 Ta... 132 3e-30 UniRef50_D2B6P7 Transcription antitermination factor NusB n=3 Ta... 132 3e-30 UniRef50_UPI00016C01E8 sun protein n=1 Tax=Epulopiscium sp. 'N.t... 132 4e-30 UniRef50_A9KM96 Sun protein n=1 Tax=Clostridium phytofermentans ... 132 4e-30 UniRef50_A0JX79 N utilization substance protein B homolog n=3 Ta... 132 4e-30 UniRef50_B6GCG9 Putative uncharacterized protein n=2 Tax=Collins... 132 4e-30 UniRef50_C9KK33 Transcription antitermination factor NusB n=1 Ta... 132 4e-30 UniRef50_UPI0000E87F00 transcription antitermination protein Nus... 132 4e-30 UniRef50_Q983A9 N utilization substance protein B homolog n=3 Ta... 132 4e-30 UniRef50_B8CWT0 Sun protein n=1 Tax=Halothermothrix orenii H 168... 132 5e-30 UniRef50_A4W3P3 Transcription termination factor n=6 Tax=Strepto... 131 6e-30 UniRef50_UPI00016C04B6 transcription termination factor n=1 Tax=... 131 7e-30 UniRef50_B9E6Q9 N utilization substance protein B homolog n=6 Ta... 131 7e-30 UniRef50_Q2S6K8 N utilization substance protein B homolog n=1 Ta... 131 8e-30 UniRef50_C4FTS3 Putative uncharacterized protein n=1 Tax=Catonel... 131 8e-30 UniRef50_C0GIQ4 Sun protein n=1 Tax=Dethiobacter alkaliphilus AH... 131 8e-30 UniRef50_A4XLC1 N utilization substance protein B homolog n=2 Ta... 131 9e-30 UniRef50_C8W9W3 NusB antitermination factor n=1 Tax=Atopobium pa... 131 9e-30 UniRef50_D2RJI2 NusB antitermination factor n=2 Tax=Acidaminococ... 131 9e-30 UniRef50_B0REX0 N utilization substance protein B homolog n=4 Ta... 131 9e-30 UniRef50_Q3AAM1 N utilization substance protein B homolog n=1 Ta... 130 1e-29 UniRef50_C8WXH1 NusB antitermination factor n=1 Tax=Alicyclobaci... 130 1e-29 UniRef50_C4V2M6 Transcription antitermination protein NusB n=1 T... 130 1e-29 UniRef50_B5YE05 N utilization substance protein B homolog n=2 Ta... 130 2e-29 UniRef50_A0LUG6 N utilization substance protein B homolog n=2 Ta... 130 2e-29 UniRef50_A8SLT0 Putative uncharacterized protein n=1 Tax=Parvimo... 130 2e-29 UniRef50_Q3A7Z0 Sun protein n=2 Tax=Desulfuromonadales RepID=Q3A... 130 2e-29 UniRef50_C2D814 Putative uncharacterized protein n=1 Tax=Atopobi... 129 2e-29 UniRef50_C4ZCZ0 N utilization substance protein B homolog n=5 Ta... 129 2e-29 UniRef50_D0LW51 NusB antitermination factor n=1 Tax=Haliangium o... 129 2e-29 UniRef50_C9RN69 NusB antitermination factor n=1 Tax=Fibrobacter ... 129 2e-29 UniRef50_UPI00016C38F9 Fmu, rRNA SAM-dependent methyltransferase... 129 3e-29 UniRef50_A5KNU7 Putative uncharacterized protein n=4 Tax=Clostri... 129 3e-29 UniRef50_Q2JK83 Ribosomal RNA small subunit methyltransferase B ... 129 3e-29 UniRef50_A7VX44 Putative uncharacterized protein n=1 Tax=Clostri... 129 3e-29 UniRef50_Q5FNA1 N utilization substance protein B homolog n=1 Ta... 128 4e-29 UniRef50_B7KB91 Sun protein n=19 Tax=Cyanobacteria RepID=B7KB91_... 128 4e-29 UniRef50_C7H0C2 Transcription antitermination factor NusB n=1 Ta... 128 5e-29 UniRef50_Q7USA9 N utilization substance protein B homolog n=2 Ta... 128 5e-29 UniRef50_A8LE23 Fmu (Sun) domain protein n=3 Tax=Frankia RepID=A... 128 5e-29 UniRef50_B2IXU2 Sun protein n=1 Tax=Nostoc punctiforme PCC 73102... 128 5e-29 UniRef50_Q4JVG6 N utilization substance protein B homolog n=5 Ta... 128 6e-29 UniRef50_A8MFJ3 N utilization substance protein B homolog n=2 Ta... 128 6e-29 UniRef50_C8WEQ4 NusB antitermination factor n=4 Tax=Zymomonas mo... 128 6e-29 UniRef50_B5GBK3 RNA-binding Sun protein n=1 Tax=Streptomyces sp.... 128 6e-29 UniRef50_B0MPP7 Putative uncharacterized protein n=1 Tax=Eubacte... 128 6e-29 UniRef50_B7APZ1 Putative uncharacterized protein n=1 Tax=Bactero... 128 6e-29 UniRef50_D1N6Z8 NusB antitermination factor n=1 Tax=Victivallis ... 128 7e-29 UniRef50_D1B3U2 Transcription antitermination factor NusB n=3 Ta... 128 7e-29 UniRef50_B0MQ18 Putative uncharacterized protein n=1 Tax=Eubacte... 128 7e-29 UniRef50_C9LUP3 Transcription antitermination factor NusB n=2 Ta... 128 7e-29 UniRef50_B0PBD5 Putative uncharacterized protein n=1 Tax=Anaerot... 128 7e-29 UniRef50_C3XMJ2 Transcription termination protein n=1 Tax=Helico... 128 7e-29 UniRef50_Q7A601 SA1060 protein n=63 Tax=Staphylococcaceae RepID=... 128 7e-29 UniRef50_UPI00019779AE transcription antitermination protein Nus... 128 7e-29 UniRef50_B4WR53 Ribosomal RNA small subunit methyltransferase B ... 127 8e-29 UniRef50_C7MCY2 tRNA/rRNA cytosine-C5-methylase n=2 Tax=Micrococ... 127 9e-29 UniRef50_A7HX88 NusB antitermination factor n=1 Tax=Parvibaculum... 127 9e-29 UniRef50_Q47QY5 N utilization substance protein B homolog n=21 T... 127 1e-28 UniRef50_D0WFZ4 Transcription antitermination factor NusB n=1 Ta... 126 1e-28 UniRef50_Q0AXL7 Putative uncharacterized protein n=1 Tax=Syntrop... 126 2e-28 UniRef50_Q836W8 N utilization substance protein B homolog n=39 T... 126 2e-28 UniRef50_C1I679 NusB antitermination factor n=1 Tax=Clostridium ... 126 2e-28 UniRef50_B0CL95 N utilization substance protein B homolog n=42 T... 126 2e-28 UniRef50_UPI0001BC34B4 sun protein n=1 Tax=Butyrivibrio crossotu... 126 2e-28 UniRef50_C5NYN0 Ribosomal RNA small subunit methyltransferase B ... 126 2e-28 UniRef50_B0NZC1 Putative uncharacterized protein n=2 Tax=Clostri... 126 2e-28 UniRef50_B0SB76 N utilization substance protein B homolog n=6 Ta... 126 2e-28 UniRef50_A6LU43 N utilization substance protein B homolog n=6 Ta... 126 2e-28 UniRef50_B0PFT6 Putative uncharacterized protein n=1 Tax=Anaerot... 126 3e-28 UniRef50_Q2LRX5 16S rRNA m(5)C 967 methyltransferase n=1 Tax=Syn... 126 3e-28 UniRef50_Q1IIS1 Sun protein n=1 Tax=Candidatus Koribacter versat... 126 3e-28 UniRef50_D0WMY6 Ribosomal RNA small subunit methyltransferase B ... 126 3e-28 UniRef50_Q0ABQ3 N utilization substance protein B homolog n=2 Ta... 126 3e-28 UniRef50_B1ZVQ6 NusB antitermination factor n=3 Tax=Verrucomicro... 126 3e-28 UniRef50_D2EIA0 Transcription antitermination factor NusB n=1 Ta... 125 3e-28 UniRef50_D1KDZ6 Transcription termination factor n=1 Tax=uncultu... 125 3e-28 UniRef50_UPI0001B583AE RNA-binding Sun protein n=2 Tax=Actinomyc... 125 4e-28 Sequences not found previously or not previously below threshold: >UniRef50_A4VHT5 N utilization substance protein B homolog n=23 Tax=Gammaproteobacteria RepID=NUSB_PSEU5 Length = 161 Score = 174 bits (442), Expect = 9e-43, Method: Composition-based stats. Identities = 71/137 (51%), Positives = 89/137 (64%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 K A RR AR A+QALY W ++ + ++E QF + D VD YF ELL GVA Sbjct: 19 KIATRRVARSLAMQALYQWHMAGQSLNEIEAQFRVDNDFSGVDGAYFHELLNGVARKKTE 78 Query: 62 LDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 +D + P L R L+EL VE A+LR++ YEL +R DVPY+V INE IELAK +GA D HK Sbjct: 79 VDQAIAPNLDRPLDELDPVELAILRLSTYELMQRIDVPYRVVINEGIELAKVYGATDGHK 138 Query: 122 FVNGVLDKAAPVIRPNK 138 FVNGVLDK AP +R + Sbjct: 139 FVNGVLDKLAPSLRSAE 155 >UniRef50_A7ZIG9 N utilization substance protein B homolog n=118 Tax=Gammaproteobacteria RepID=NUSB_ECO24 Length = 139 Score = 168 bits (428), Expect = 4e-41, Method: Composition-based stats. Identities = 139/139 (100%), Positives = 139/139 (100%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA Sbjct: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH Sbjct: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 Query: 121 KFVNGVLDKAAPVIRPNKK 139 KFVNGVLDKAAPVIRPNKK Sbjct: 121 KFVNGVLDKAAPVIRPNKK 139 >UniRef50_Q48DC2 N utilization substance protein B homolog n=51 Tax=Gammaproteobacteria RepID=NUSB_PSE14 Length = 165 Score = 165 bits (420), Expect = 3e-40, Method: Composition-based stats. Identities = 73/137 (53%), Positives = 93/137 (67%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 K A RR AR+ A QALY W ++ + + ++E QF + D +VD YFRELL GVATN Sbjct: 23 KSAKRREARQMATQALYQWHMAGHALNEIEAQFRVDNDFSNVDGAYFRELLHGVATNKTE 82 Query: 62 LDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 +D + P L +EEL VE AVLR++ +EL KR DVPY+V INE IELAK +G+ D HK Sbjct: 83 IDTALSPCLDLTIEELDPVELAVLRLSTFELLKRIDVPYRVVINEGIELAKVYGSTDGHK 142 Query: 122 FVNGVLDKAAPVIRPNK 138 FVNGVLDK AP +R + Sbjct: 143 FVNGVLDKLAPRLREVE 159 >UniRef50_Q1IFL9 N utilization substance protein B homolog n=12 Tax=Proteobacteria RepID=NUSB_PSEE4 Length = 166 Score = 165 bits (419), Expect = 4e-40, Method: Composition-based stats. Identities = 71/137 (51%), Positives = 91/137 (66%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 K A RR AR+ A QALY W ++++ + +VE QF + D DVD YFRE+L GV Sbjct: 24 KSAKRREARKLATQALYQWHMAKHSLNEVEAQFRVDNDFSDVDGAYFREILHGVPAKKVE 83 Query: 62 LDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 +D +KP L LEEL VE +VLR++ +E R+DVPY+V INE +ELAK FGA D HK Sbjct: 84 IDEALKPCLDTPLEELDPVELSVLRLSAWEFMMRADVPYRVVINEGVELAKVFGATDGHK 143 Query: 122 FVNGVLDKAAPVIRPNK 138 FVNGVLDK AP +R + Sbjct: 144 FVNGVLDKLAPRLREAE 160 >UniRef50_C5BS84 N utilization substance protein B homolog n=2 Tax=Gammaproteobacteria RepID=NUSB_TERTT Length = 147 Score = 163 bits (413), Expect = 2e-39, Method: Composition-based stats. Identities = 72/141 (51%), Positives = 90/141 (63%), Gaps = 3/141 (2%) Query: 1 MKP--AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATN 58 MK A R RAR A+QA+Y WQ++ N + +E +F + D+ VD YF EL GVA + Sbjct: 1 MKVTAATRSRARHFAMQAIYQWQMNGNPLHVIEAEFHTDNDMSKVDTEYFHELFHGVAAD 60 Query: 59 TAYLDGLMKPYLSR-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 + LD P+L LE+L V A+LR A +EL R DVPYKV INEA+ LAK FGAE Sbjct: 61 KSALDACFLPHLKSLPLEKLDPVTLALLRQATFELKNRVDVPYKVVINEAVNLAKKFGAE 120 Query: 118 DSHKFVNGVLDKAAPVIRPNK 138 DSHKFVNGVLDK A +R + Sbjct: 121 DSHKFVNGVLDKVAADLRALE 141 >UniRef50_C9R7W0 NusB antitermination factor n=1 Tax=Ammonifex degensii KC4 RepID=C9R7W0_AMMDK Length = 155 Score = 159 bits (404), Expect = 2e-38, Method: Composition-based stats. Identities = 48/132 (36%), Positives = 75/132 (56%), Gaps = 1/132 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +RRRARE A+ L+ + + + LAE + + + L+ G +D Sbjct: 1 MSRRRAREAALMVLFQVDVGGAVPEEALERTLAEWRLGNASREFATSLVLGTLAYRPQID 60 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 +++ R LE + +V++ V+R+ALYEL R D+P VAINEA+ELAK +G E+S +F Sbjct: 61 RVIEELSQRWRLERMNRVDRNVMRLALYELLFRQDIPPAVAINEAVELAKRYGGEESPRF 120 Query: 123 VNGVLDKAAPVI 134 VNG+L K A + Sbjct: 121 VNGILGKVAENL 132 >UniRef50_Q0AD60 N utilization substance protein B homolog n=3 Tax=Nitrosomonas RepID=NUSB_NITEC Length = 167 Score = 157 bits (397), Expect = 1e-37, Method: Composition-based stats. Identities = 54/136 (39%), Positives = 79/136 (58%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 RR +RE A+Q +Y W+L+ + +++ Q D YF +LL GV ++ L Sbjct: 20 KNRRRLSRELALQGIYQWRLAGGNAQEIDLQLQQVNFYSKADGSYFSDLLQGVLEHSRDL 79 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + ++ YL R L EL VE ++L I YE+ ++P + INEAIELAKS+G D HK+ Sbjct: 80 EAQIQAYLDRQLAELSPVECSILLIGTYEMVHHPEIPCRAIINEAIELAKSYGGTDGHKY 139 Query: 123 VNGVLDKAAPVIRPNK 138 VNGVLDK A +R + Sbjct: 140 VNGVLDKLAAQLRAVE 155 >UniRef50_A3DDP0 N utilization substance protein B homolog n=5 Tax=Clostridium RepID=NUSB_CLOTH Length = 145 Score = 156 bits (396), Expect = 2e-37, Method: Composition-based stats. Identities = 43/128 (33%), Positives = 77/128 (60%), Gaps = 1/128 (0%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 RR +RE A++ +Y ++ ++ + L + D+ + D Y +++ GV N +DG Sbjct: 3 RRASREIAMKLIYQLEIQKDSREEQINNTLEQYDLNENDREYILDVVKGVFKNQEEIDGT 62 Query: 66 MKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 ++ + L + +V+ A+LR+A+YE+ R D+P+ VAINEA+ELAK++ E+S F+N Sbjct: 63 IEKFSKGWKLSRISKVDLAILRLAIYEMCHRDDIPFTVAINEAVELAKNYSGEESGSFIN 122 Query: 125 GVLDKAAP 132 G+L K Sbjct: 123 GILGKVVK 130 >UniRef50_Q2YD50 N utilization substance protein B homolog n=4 Tax=Betaproteobacteria RepID=NUSB_NITMU Length = 158 Score = 155 bits (394), Expect = 3e-37, Method: Composition-based stats. Identities = 53/137 (38%), Positives = 77/137 (56%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 + + RR ARE A+Q LY W ++ +E Q ++ D YF LL GV Sbjct: 17 RKSRRRLARELALQGLYQWCVAGGSAGTIEAQLRDTEEFPKTDEEYFSRLLHGVLMQAPE 76 Query: 62 LDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 L+ ++P L R EL VE ++L + YEL + ++PY+ INEA+ELAK++G HK Sbjct: 77 LEKEIQPCLDRPFNELSPVEISILLLGAYELERHPEIPYRAVINEAVELAKAYGGTHGHK 136 Query: 122 FVNGVLDKAAPVIRPNK 138 +VNGVLDK A +R + Sbjct: 137 YVNGVLDKLAVKLRAAE 153 >UniRef50_A5D1B7 tRNA and rRNA cytosine-C5-methylases n=6 Tax=Clostridia RepID=A5D1B7_PELTS Length = 456 Score = 155 bits (393), Expect = 4e-37, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 57/128 (44%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 ARE A++ + + + Q L + +D + EL G + LD +++ Sbjct: 9 ARELALKVVNAVEEEGAYANLALNQVLEKHRPGKLDRAFATELAYGTLRSLNTLDWVLEQ 68 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 ++ + L + +LR+ +Y+L VP NE ELA+ +G + KFVNGVL Sbjct: 69 FIKQPLSSQSRTVLNILRLGVYQLMFMDRVPPSAVCNEGAELARKYGHAGTVKFVNGVLR 128 Query: 129 KAAPVIRP 136 + + Sbjct: 129 NISRRLNE 136 >UniRef50_Q21F20 N utilization substance protein B homolog n=5 Tax=Gammaproteobacteria RepID=NUSB_SACD2 Length = 150 Score = 155 bits (393), Expect = 5e-37, Method: Composition-based stats. Identities = 74/141 (52%), Positives = 94/141 (66%), Gaps = 3/141 (2%) Query: 1 MKPAA--RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATN 58 MK +A R RAR A+QALY W++S N + +E +F + D+ VDV YF E+L GVA Sbjct: 1 MKVSAAARGRARHFAMQALYQWEMSGNALHVIEAEFHTDNDMSKVDVEYFHEILHGVAAI 60 Query: 59 TAYLDGLMKPYLSR-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 + LD KP+L+ L+E+ V AVLR A YE KR DVPYKV INEA+ LAK FGA Sbjct: 61 KSTLDETFKPFLTGLRLDEIDPVSLAVLRQACYEFEKRVDVPYKVVINEAVNLAKKFGAA 120 Query: 118 DSHKFVNGVLDKAAPVIRPNK 138 DSHKF+NGVLDK A +R ++ Sbjct: 121 DSHKFINGVLDKVALRVRKDE 141 >UniRef50_Q31FT2 N utilization substance protein B homolog n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=NUSB_THICR Length = 161 Score = 155 bits (392), Expect = 5e-37, Method: Composition-based stats. Identities = 60/134 (44%), Positives = 91/134 (67%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R + R A+QALY WQ++ ++ D+ QF E + D DV F+E++ VA + A LD L Sbjct: 24 RTQTRRVALQALYQWQVNHSETVDIIKQFSEEGRLVDTDVALFQEIVNEVANHAADLDEL 83 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 P+L R + + VEK ++R+ ++EL + ++PY+V INE++ELAK FGAEDSHK++NG Sbjct: 84 YAPFLDRAVARIDPVEKNIMRMGVFELQNKLEIPYRVVINESVELAKRFGAEDSHKYING 143 Query: 126 VLDKAAPVIRPNKK 139 +LDKAA +R +K Sbjct: 144 ILDKAAEGLRSLEK 157 >UniRef50_A1W9I4 N utilization substance protein B homolog n=6 Tax=Comamonadaceae RepID=NUSB_ACISJ Length = 177 Score = 155 bits (392), Expect = 6e-37, Method: Composition-based stats. Identities = 55/136 (40%), Positives = 75/136 (55%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 + R RARE A+QALY + ND ++ D ++ LL G T Y+ Sbjct: 32 KSGRSRAREFALQALYQHLVGGNDATAIDVFTRDLSGFHKADAAHYDALLHGCITTAQYM 91 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 D L+ P L R + E+ +E AV+ I +YE DVP++V INE IELAK FG D HK+ Sbjct: 92 DELIAPQLDRKMSEISPIEHAVMWIGVYEFQHCQDVPWRVVINECIELAKEFGGTDGHKY 151 Query: 123 VNGVLDKAAPVIRPNK 138 VNGVL+ AP +R + Sbjct: 152 VNGVLNGLAPQLRATE 167 >UniRef50_C7HWX1 NusB antitermination factor n=1 Tax=Thiomonas intermedia K12 RepID=C7HWX1_THIIN Length = 202 Score = 154 bits (391), Expect = 7e-37, Method: Composition-based stats. Identities = 53/136 (38%), Positives = 79/136 (58%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 +ARR++RE A Q +Y W L+ +D +E +D +F+ LL G L Sbjct: 8 KSARRKSRELAFQGIYEWLLAGSDTGAIEAFLHERYPTIKLDDDHFQSLLHGALAEAGPL 67 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 D L++P++ R EL VE A+L + +EL + DVPY+V INEA+EL K +G D +K+ Sbjct: 68 DALIQPHIDRQTSELSPVEHALLLMGAFELQRHLDVPYRVVINEAVELGKVYGGTDGYKY 127 Query: 123 VNGVLDKAAPVIRPNK 138 VNGVLD+ A +R + Sbjct: 128 VNGVLDRIAAQLRKTE 143 >UniRef50_A7C6S2 Transcription antitermination protein NusB n=1 Tax=Beggiatoa sp. PS RepID=A7C6S2_9GAMM Length = 164 Score = 154 bits (391), Expect = 7e-37, Method: Composition-based stats. Identities = 67/141 (47%), Positives = 88/141 (62%), Gaps = 12/141 (8%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFL------------AEQDVKDVDVLYFRE 50 P AR ARE +QALY WQL+ + +E QFL E D++ D+ YF++ Sbjct: 10 PKARHVARERVLQALYQWQLTGQNTQLIESQFLDESTLSKEEDESEEPDMQKADIPYFKQ 69 Query: 51 LLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIEL 110 LL + T+ LD L P+L R + +L VE A+LRI YEL+ D+P+KV INEA+EL Sbjct: 70 LLHSIPEKTSDLDKLFAPFLDRKITQLDPVELAILRIGSYELTHCQDIPFKVVINEAVEL 129 Query: 111 AKSFGAEDSHKFVNGVLDKAA 131 AK FGAE SHK++NGVLDK A Sbjct: 130 AKQFGAEQSHKYINGVLDKLA 150 >UniRef50_B6IZ82 N utilization substance protein B homolog n=6 Tax=Coxiella burnetii RepID=NUSB_COXB2 Length = 138 Score = 154 bits (390), Expect = 9e-37, Method: Composition-based stats. Identities = 60/137 (43%), Positives = 82/137 (59%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 M R AR A+QALY W + + QF+ E D+ D DV YF+E++ G + A Sbjct: 1 MINKTRHNARRYALQALYQWFFCETKPDALISQFMEEHDLSDTDVAYFKEVVTGTIQHVA 60 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D LM +L R + L VE +VLR+++YEL R +VPYKV I+EA+EL K FGAE H Sbjct: 61 IIDELMTAHLDRKISALNPVELSVLRLSIYELLHRKEVPYKVVIDEALELVKEFGAEAGH 120 Query: 121 KFVNGVLDKAAPVIRPN 137 K+VN +LD + IR Sbjct: 121 KYVNAILDVLSSEIRKG 137 >UniRef50_C0GMV1 NusB antitermination factor n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GMV1_9DELT Length = 157 Score = 153 bits (389), Expect = 1e-36, Method: Composition-based stats. Identities = 52/140 (37%), Positives = 75/140 (53%), Gaps = 4/140 (2%) Query: 3 PAARRRARECAVQALYSW--QLSQNDIADVEYQFLAEQDVK-DVDVLYFRELLAGVATNT 59 +R RE A Q LYS + I D + F +QD D+ Y +L+ GV N Sbjct: 11 THSRHAQREFAFQVLYSLHFDQTGTHILDTFHHFKNDQDTAVQQDMSYALQLINGVRENL 70 Query: 60 AYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 LD + + ++ + VE ++R+A+YE+ R D+P KV INEAIELAK+FG + Sbjct: 71 EELDAAIGRHSQNWKVKRIAMVELTIMRLAVYEMIYREDIPVKVGINEAIELAKTFGDNN 130 Query: 119 SHKFVNGVLDKAAPVIRPNK 138 S FVNG+LD A +R + Sbjct: 131 SRNFVNGILDAVARDMRHGE 150 >UniRef50_Q493G9 N utilization substance protein B homolog n=3 Tax=Enterobacteriaceae RepID=NUSB_BLOPB Length = 144 Score = 153 bits (387), Expect = 2e-36, Method: Composition-based stats. Identities = 81/134 (60%), Positives = 104/134 (77%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK +RRRAREC +QALYSWQ+S+ND+ ++E + EQD++D ++ YF EL GV + Sbjct: 1 MKAISRRRARECTLQALYSWQVSKNDVKEIERYVVTEQDIQDCNISYFHELYIGVISCAE 60 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD LM P+LSR LE+LG +E +VLRIAL+EL+K +D+PYKVAINEAIEL K FGAE SH Sbjct: 61 ELDKLMIPHLSRNLEKLGYIEHSVLRIALFELTKCNDIPYKVAINEAIELVKIFGAEKSH 120 Query: 121 KFVNGVLDKAAPVI 134 KF+NGVLDK A + Sbjct: 121 KFINGVLDKIANQL 134 >UniRef50_A7VUU4 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VUU4_9CLOT Length = 446 Score = 152 bits (385), Expect = 3e-36, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 54/127 (42%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLM 66 + AR A++AL + + V LA + D + L GV LD + Sbjct: 5 KNARLTALKALLRVEEGKGYSNLVLDHGLAASGLDGRDAAFASALFYGVLERRITLDYQI 64 Query: 67 KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGV 126 Y L ++ + +LR+ Y+L VP A+NE+++L ++ + + FVNG+ Sbjct: 65 SRYSKMPLSQMAAPVREILRLGFYQLLYMDKVPQSAAVNESVKLTRAVKKDKASGFVNGI 124 Query: 127 LDKAAPV 133 L Sbjct: 125 LRSFIRD 131 >UniRef50_Q0K7T8 N utilization substance protein B homolog n=70 Tax=Betaproteobacteria RepID=NUSB_RALEH Length = 172 Score = 152 bits (385), Expect = 3e-36, Method: Composition-based stats. Identities = 60/136 (44%), Positives = 81/136 (59%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 +ARRR+RE A+Q LY W L++NDI ++ Q D +F LL G A L Sbjct: 32 KSARRRSRELALQGLYQWLLNRNDIGAIQAHLHDAQGFNKADREHFDALLNGAVREEARL 91 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 +P+L R +EEL VE+A L + YEL D+PYKV INEA+EL K+FG + +K+ Sbjct: 92 TAAFEPFLDRKVEELSPVERAALLVGSYELVHCLDIPYKVVINEAVELTKTFGGVEGYKY 151 Query: 123 VNGVLDKAAPVIRPNK 138 VNGVLDK A +R + Sbjct: 152 VNGVLDKLAAQVRAAE 167 >UniRef50_D1BMC4 Sun protein n=3 Tax=Veillonella RepID=D1BMC4_VEIPT Length = 451 Score = 152 bits (385), Expect = 3e-36, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 1/132 (0%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 K ++ R AV+AL + ++L + + D+D +F EL+ GV Y Sbjct: 5 KTNQQQNIRLLAVKALSEINRNGAYANIKLQEYLQKYHLSDLDRRFFTELVYGVIRRKNY 64 Query: 62 LDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 LD ++ + R +++L + +LR+ +Y++ VP A+NE+++LAK Sbjct: 65 LDAIIVFFAKRPIKKLSSMVLEILRLGIYQIIYMDKVPESAAVNESVKLAKKL-TRGLSG 123 Query: 122 FVNGVLDKAAPV 133 FVN VL Sbjct: 124 FVNAVLRSVLRE 135 >UniRef50_D0L1W4 NusB antitermination factor n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L1W4_HALNC Length = 196 Score = 152 bits (385), Expect = 3e-36, Method: Composition-based stats. Identities = 59/140 (42%), Positives = 89/140 (63%), Gaps = 3/140 (2%) Query: 2 KPAARRR---ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATN 58 KP+ ++R ARE AVQALY L+ + ++ QF+ + + VD+ FR ++ GV+ N Sbjct: 54 KPSPKKRWRWARERAVQALYQQILNHTPVDLLDAQFMEDAFMLKVDLELFRRIVRGVSAN 113 Query: 59 TAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 LD P L R L E+ +E+A+LR+ +EL ++P VAINEA+E+AK +GA + Sbjct: 114 EESLDEAYSPLLDRPLAEIDPIEQAILRLGAFELIHTPEIPRAVAINEAVEMAKLYGATE 173 Query: 119 SHKFVNGVLDKAAPVIRPNK 138 SHK++NGVLDK A +R N+ Sbjct: 174 SHKYINGVLDKLADRVRLNE 193 >UniRef50_B3U4H5 Transcription antitermination protein n=1 Tax=Candidatus Nitrospira defluvii RepID=B3U4H5_9BACT Length = 157 Score = 152 bits (385), Expect = 4e-36, Method: Composition-based stats. Identities = 49/138 (35%), Positives = 76/138 (55%), Gaps = 3/138 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 A+R +ARE AVQ L+ + + F + + + ++ L+AGV N LD Sbjct: 2 ASRHQARERAVQILFQYDIHGQ-AGPWLDDFWIQYPLAEELRVFAERLVAGVRANKKELD 60 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 L+ Y + + + +++ +LR+ +EL +VP KV +NEAIELAKSFG E++ KF Sbjct: 61 ALIGTYATNWKVSRMPIIDRNILRMGCFELLHVPEVPAKVTLNEAIELAKSFGDEEASKF 120 Query: 123 VNGVLDKAA-PVIRPNKK 139 VNG+LDK R +K Sbjct: 121 VNGILDKLLGSDARLERK 138 >UniRef50_A5D319 N utilization substance protein B homolog n=3 Tax=Peptococcaceae RepID=NUSB_PELTS Length = 144 Score = 152 bits (385), Expect = 4e-36, Method: Composition-based stats. Identities = 38/130 (29%), Positives = 68/130 (52%), Gaps = 1/130 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +RR+ARE A+Q L+ + D + + R L+ G N A +D Sbjct: 1 MSRRQARERALQILFQVDVGGADPGEAFRLMDEGFGELKKYQEFARLLVGGTLENLAAID 60 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ + + V++ ++R+ALYE+ D+PY V++NEA+EL K++G E+S +F Sbjct: 61 RVIAGVSKDWNINRMANVDRNIIRMALYEIFFCEDIPYSVSVNEAVELGKTYGGEESGRF 120 Query: 123 VNGVLDKAAP 132 +NG+L + Sbjct: 121 INGILGRIVE 130 >UniRef50_Q3JCY0 N utilization substance protein B homolog n=2 Tax=Nitrosococcus oceani RepID=NUSB_NITOC Length = 148 Score = 152 bits (384), Expect = 4e-36, Method: Composition-based stats. Identities = 60/135 (44%), Positives = 87/135 (64%), Gaps = 1/135 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 R +AR A+Q LY WQL D+ ++ +F+ + D++ +D YF+ELL GV LD Sbjct: 3 NRRSKARTAALQGLYQWQLMGQDVDKIDIEFIVQ-DIRGIDHAYFQELLRGVPQRQGELD 61 Query: 64 GLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 + P+L R + E+ VE A+LRI +EL R ++PY+V +NEAIELAK FGAE H++V Sbjct: 62 ECLGPFLDRPINEVDPVECAILRIGAFELLCRPEIPYRVVLNEAIELAKRFGAEHGHRYV 121 Query: 124 NGVLDKAAPVIRPNK 138 NG+LDK A +R + Sbjct: 122 NGILDKVAQKVRATE 136 >UniRef50_B3DWQ3 N utilization substance protein B homolog n=1 Tax=Methylacidiphilum infernorum V4 RepID=NUSB_METI4 Length = 143 Score = 152 bits (384), Expect = 5e-36, Method: Composition-based stats. Identities = 40/131 (30%), Positives = 70/131 (53%), Gaps = 2/131 (1%) Query: 5 ARRRARECAVQALYSWQLS-QNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +RR+ RE VQ LY W+++ + ++ F + D + L +A + ++ Sbjct: 3 SRRKIRELIVQFLYQWEMNKGVGLDNMLLDFWDFSPLDQKDKEAVEQWLKEIAEHKEAIE 62 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + Y+ L+ L V+K +L + +YE+ R D+P V+INE++E+AK + E+S KF Sbjct: 63 EKINSYVKNWSLDRLAPVDKCILILGIYEILYRKDIPPAVSINESVEIAKKYSTEESGKF 122 Query: 123 VNGVLDKAAPV 133 VNG+LD Sbjct: 123 VNGILDSVLKD 133 >UniRef50_A8FF16 N utilization substance protein B homolog n=28 Tax=Bacillales RepID=NUSB_BACP2 Length = 131 Score = 152 bits (384), Expect = 5e-36, Method: Composition-based stats. Identities = 50/136 (36%), Positives = 77/136 (56%), Gaps = 8/136 (5%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK RR ARE A+Q L+ +S D + L EQ+ +F EL+ GV Sbjct: 1 MK---RRTAREKALQTLFQIDVSNIDPKEAITHALDEQESDP----FFEELVFGVLEQKD 53 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 LD ++ +L L+ + V++A+LR+++YE+ + D+P V++NEAIELAK FG + + Sbjct: 54 KLDDMISQHLVNWKLDRIANVDRAILRLSVYEMVYQEDIPVSVSMNEAIELAKLFGDDKA 113 Query: 120 HKFVNGVLDKAAPVIR 135 KFVNGVL ++ Sbjct: 114 PKFVNGVLSNIKNDLK 129 >UniRef50_A3DCX8 Sun protein n=5 Tax=Clostridium RepID=A3DCX8_CLOTH Length = 455 Score = 152 bits (384), Expect = 5e-36, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 61/129 (47%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 + RE A++ LY ++L Q+ + +D + +++ G +D L++ Sbjct: 9 KVRETALKILYDINEKGAYSNISLNKYLNGQEFESIDRAFITDIVYGTLKWQYTIDYLIE 68 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 + S ++++ +LR+ +Y+L +P+ A NE+++LA +G S K+VN VL Sbjct: 69 KFSSVKIKKISPWIFNILRMGIYQLIYTDKIPFFAACNESVKLAAKYGHAASSKYVNAVL 128 Query: 128 DKAAPVIRP 136 A Sbjct: 129 RNIARNKEN 137 >UniRef50_B0TEI6 N utilization substance protein B homolog n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=NUSB_HELMI Length = 206 Score = 151 bits (382), Expect = 7e-36, Method: Composition-based stats. Identities = 46/136 (33%), Positives = 75/136 (55%), Gaps = 1/136 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +RR+ RE A+Q L+ + + + A E + + + REL+ G N +D Sbjct: 1 MSRRQGRETALQTLFMADVGRMEPAYALQYASEEFGISEAAAAFARELVEGAVANRETID 60 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 G ++ LE + V++ +LR+A++E+ R D+P AINEAIELAK + E+S KF Sbjct: 61 GNIRRLAKEWNLERMPHVDRNLLRVAIFEMLFREDIPLNAAINEAIELAKIYANEESAKF 120 Query: 123 VNGVLDKAAPVIRPNK 138 VNG+L + A +R + Sbjct: 121 VNGILGQLARELREAR 136 >UniRef50_A0L3Z8 NusB antitermination factor n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L3Z8_MAGSM Length = 165 Score = 151 bits (382), Expect = 7e-36, Method: Composition-based stats. Identities = 47/139 (33%), Positives = 79/139 (56%), Gaps = 1/139 (0%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 M+ R ++RE A+Q LY +++ + + L + + +D YF +L GV Sbjct: 15 MRRGGRSKSREIALQVLYGCEIAHDPVGPALRNMLEDPHSEGMDQDYFSQLTLGVEAERE 74 Query: 61 YLDGLMKPY-LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 LD + + ++ V+ +LR+ +YEL K+ +VP++V +NEAIEL+K FG E+S Sbjct: 75 VLDSWIGRAGAAWSMDRFSVVDHNILRLGIYELLKQPEVPHRVILNEAIELSKRFGGEES 134 Query: 120 HKFVNGVLDKAAPVIRPNK 138 +FVNGV+DK A ++R Sbjct: 135 SRFVNGVMDKVANLVREED 153 >UniRef50_C0N8C8 Transcription antitermination factor NusB n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N8C8_9GAMM Length = 150 Score = 150 bits (381), Expect = 9e-36, Method: Composition-based stats. Identities = 50/134 (37%), Positives = 75/134 (55%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 R +AR AVQALY ++ +F+ + +D YF L+ G +D Sbjct: 6 PRTKARRAAVQALYQALVNNETPQKAGLEFVTAEYADKIDRKYFTTLIEGTIKYQQAIDA 65 Query: 65 LMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + + R L + VE +VLR+A++E ++PY+V +NEA+ELAKSFG E HK+VN Sbjct: 66 ELSEAVDRDLNAVDPVEISVLRLAVFEFMHLPEIPYRVVLNEAVELAKSFGGEQGHKYVN 125 Query: 125 GVLDKAAPVIRPNK 138 GVLDK +RP++ Sbjct: 126 GVLDKMGARLRPHE 139 >UniRef50_A9BVN7 N utilization substance protein B homolog n=7 Tax=Comamonadaceae RepID=NUSB_DELAS Length = 212 Score = 150 bits (381), Expect = 1e-35, Method: Composition-based stats. Identities = 51/136 (37%), Positives = 74/136 (54%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 + R RARE A+QALY + ND+ ++ D +++ LL G + L Sbjct: 32 KSNRSRAREFALQALYQHLVGGNDVEAIDRFTRDLSGFHKADSVHYDALLRGCINSQVDL 91 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 D L+ P L R + E+ +E A + I +YE DVP++V +NE IELAK FG D HK+ Sbjct: 92 DALIAPKLDRTMAEISPIEHASMWIGVYEFQHCPDVPWRVVLNECIELAKEFGGTDGHKY 151 Query: 123 VNGVLDKAAPVIRPNK 138 VN VL+ AP +R + Sbjct: 152 VNAVLNGLAPTLRAAE 167 >UniRef50_B8FJ78 N utilization substance protein B homolog n=2 Tax=Desulfobacteraceae RepID=NUSB_DESAA Length = 143 Score = 150 bits (381), Expect = 1e-35, Method: Composition-based stats. Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 1/137 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 RRRARE A+Q+L+ + + F +F EL GV N +D Sbjct: 2 GKRRRARELALQSLFYVDSTSAPPLEALDLFCQNFPPPKDLAQFFYELAKGVINNQDEID 61 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 L++ + + L + V+ ++RIA YE DVP +V+INEAI++ K FG +S F Sbjct: 62 RLIEQHSNNWKLYRMSAVDLNLMRIAAYEFLFCPDVPRRVSINEAIDIGKRFGTAESGAF 121 Query: 123 VNGVLDKAAPVIRPNKK 139 +NG+LD + +K Sbjct: 122 INGILDSIHLHLGKEEK 138 >UniRef50_A8FD39 rRNA SAM-dependent methyltransferase RmsB n=3 Tax=Bacillaceae RepID=A8FD39_BACP2 Length = 447 Score = 150 bits (381), Expect = 1e-35, Method: Composition-based stats. Identities = 36/133 (27%), Positives = 64/133 (48%), Gaps = 4/133 (3%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK + RE A+ AL + +Q + + ++D+ D D EL+ G N Sbjct: 1 MKKSN---VREVALDALIKLEQNQAYSNLLLQSVMKDKDLADQDKPLLTELVYGTLQNKL 57 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD ++ P++ + +++ +LR++LY++ +P + AI+EA+EL K G + Sbjct: 58 ALDYMLAPFVKKP-QKVAPWVMQLLRMSLYQMVYLEKIPDRAAIHEAVELTKKRGHKGIS 116 Query: 121 KFVNGVLDKAAPV 133 VNGVL Sbjct: 117 SLVNGVLRSVQRE 129 >UniRef50_B0UU23 N utilization substance protein B homolog n=33 Tax=Gammaproteobacteria RepID=NUSB_HAES2 Length = 144 Score = 150 bits (380), Expect = 1e-35, Method: Composition-based stats. Identities = 71/135 (52%), Positives = 93/135 (68%), Gaps = 2/135 (1%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFL--AEQDVKDVDVLYFRELLAGVATNT 59 K + RRRARECAVQ LYSW +S+N ++E F+ + ++K VD+ YFR+L + Sbjct: 7 KISPRRRARECAVQNLYSWAISKNSPEEIELNFIVDQDNEMKGVDMPYFRKLFHQTINHV 66 Query: 60 AYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D M PYL R EL +E A+LR+A+YEL DVPYKV INEAIE+AK FGAE+S Sbjct: 67 ETIDSTMAPYLDRDNVELDPIECAILRLAVYELKFELDVPYKVVINEAIEVAKVFGAEES 126 Query: 120 HKFVNGVLDKAAPVI 134 HK++NGVLDK AP + Sbjct: 127 HKYINGVLDKIAPAL 141 >UniRef50_Q479L3 N utilization substance protein B homolog n=3 Tax=Betaproteobacteria RepID=NUSB_DECAR Length = 163 Score = 150 bits (380), Expect = 1e-35, Method: Composition-based stats. Identities = 53/136 (38%), Positives = 77/136 (56%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 +ARRRARE +Q LY W++ D A +E + D +F L GV + L Sbjct: 19 KSARRRAREFVLQGLYQWRVGGADEASIEAYAPEMEGFAKADREFFVGTLRGVISQQEKL 78 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + ++ R EL VE +L + +E+ ++ PY+V INEAIEL K+FG D HK+ Sbjct: 79 IEQVSTHIDRPFNELSPVEACILMLGSFEMLNHAETPYRVIINEAIELTKAFGGTDGHKY 138 Query: 123 VNGVLDKAAPVIRPNK 138 VNGVLDK A ++RP++ Sbjct: 139 VNGVLDKVAAILRPDE 154 >UniRef50_Q67NA9 N utilization substance protein B homolog n=2 Tax=Clostridiales RepID=NUSB_SYMTH Length = 153 Score = 150 bits (379), Expect = 2e-35, Method: Composition-based stats. Identities = 45/141 (31%), Positives = 74/141 (52%), Gaps = 9/141 (6%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQ--------DVKDVDVLYFRELLAGV 55 +RR+ARE A+QAL+ ++ D Q L + +++ + R L+ G Sbjct: 1 MSRRKARELALQALFQMDIAGTDPDTAVAQALTRETEPDWAPDRLEEESAEFARRLVRGA 60 Query: 56 ATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 + D L+ Y +E + V++A+LR+A+YE+ DVP VA+ EA+ELAK+F Sbjct: 61 WQHREESDRLIAQYARGWRVERMAAVDRAILRMAVYEIVHSEDVPDSVAVAEAVELAKTF 120 Query: 115 GAEDSHKFVNGVLDKAAPVIR 135 DS +FVNG+L ++ Sbjct: 121 STADSSRFVNGILGSVIRGMK 141 >UniRef50_Q1PUX1 Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PUX1_9BACT Length = 422 Score = 150 bits (379), Expect = 2e-35, Method: Composition-based stats. Identities = 48/140 (34%), Positives = 73/140 (52%), Gaps = 3/140 (2%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 M+ R ARE A++ALY L + +F + K + L+ G ++ Sbjct: 1 MR--NRTIARELAIKALYQLDLLGDKAETEIDEFCRQNAEKPDIYKFALLLVTGCRSHVK 58 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D + L + ++K +LR+ +YEL R D+P KV+INEAIELAK FG +DS Sbjct: 59 EIDERISLSAENWDLHRMAVIDKNILRLGVYELLYRDDIPPKVSINEAIELAKKFGDKDS 118 Query: 120 HKFVNGVLDKAAPVIRPNKK 139 FVNG+LDK ++ K+ Sbjct: 119 GMFVNGILDKVYNWLKNGKQ 138 >UniRef50_C6X9V7 NusB antitermination factor n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6X9V7_METSD Length = 158 Score = 150 bits (379), Expect = 2e-35, Method: Composition-based stats. Identities = 51/134 (38%), Positives = 77/134 (57%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 RR++RE A++ +Y ++Q D + + E + D Y R+LL GV LD Sbjct: 19 NRRKSRELALKGIYRNLMNQADFRAILRELADEPEFDKADQEYLRKLLDGVLAEREELDR 78 Query: 65 LMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + ++ R ++EL +E +L ++ YEL +PY+VAINE +ELAK +G D HK+VN Sbjct: 79 RIAVFVDRPMQELSPIEHGILCLSAYELIFDLSIPYRVAINEGVELAKIYGGTDGHKYVN 138 Query: 125 GVLDKAAPVIRPNK 138 GVLDK A RP + Sbjct: 139 GVLDKLAAEARPGE 152 >UniRef50_C6WU13 NusB antitermination factor n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WU13_METML Length = 178 Score = 148 bits (375), Expect = 5e-35, Method: Composition-based stats. Identities = 55/134 (41%), Positives = 79/134 (58%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 RR++RE ++A+Y L+ ++++ V + D D YF+ LL V N +DG Sbjct: 39 NRRKSRELVLKAVYRGMLNDSELSQVFRDMRDDPDYNKADEAYFKHLLQAVTENLTAIDG 98 Query: 65 LMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + ++ R LEEL VE A+LRIA EL +PY+V INE +ELAK FG D HK++N Sbjct: 99 KIVGFIDRTLEELSPVEHAILRIAGCELMFDLSIPYRVVINEGVELAKVFGGTDGHKYIN 158 Query: 125 GVLDKAAPVIRPNK 138 GVLDK A +R + Sbjct: 159 GVLDKFAADVRAAE 172 >UniRef50_Q2BM00 NusB protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BM00_9GAMM Length = 159 Score = 148 bits (375), Expect = 5e-35, Method: Composition-based stats. Identities = 69/136 (50%), Positives = 92/136 (67%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 RR AR A+QALYSW L+ + ++E QF + D++D D+ F ELL +A + L Sbjct: 17 TTQRRNARSYALQALYSWTLAGQPLNELEAQFRVDNDMRDTDIRLFSELLHSIAGGKSEL 76 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 D L +L R ++EL +E VLRI YELSKR +VPY+VAINE++ELAK+FGA DSHK+ Sbjct: 77 DQLYTDFLDRNVDELDPIELNVLRIGAYELSKRFEVPYRVAINESVELAKTFGATDSHKY 136 Query: 123 VNGVLDKAAPVIRPNK 138 VNGVLDK A +R + Sbjct: 137 VNGVLDKLAQRVRMAE 152 >UniRef50_B8D9P0 N utilization substance protein B homolog n=5 Tax=Buchnera aphidicola RepID=NUSB_BUCA5 Length = 143 Score = 148 bits (375), Expect = 5e-35, Method: Composition-based stats. Identities = 80/139 (57%), Positives = 108/139 (77%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MKP+ RR+AR CA+Q LYSW++S N+I + FL E++ K++D++YF EL+ G+ + Sbjct: 1 MKPSFRRKARACALQVLYSWEISHNNIKESAIYFLKEKNKKNIDIVYFYELIIGITYDCK 60 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D LMKPYL R L+ELG +E+A+LRI+ YEL KR+D+PYKV+INE IELAK FG+EDSH Sbjct: 61 NIDNLMKPYLFRSLKELGHIERAILRISFYELHKRNDIPYKVSINEGIELAKLFGSEDSH 120 Query: 121 KFVNGVLDKAAPVIRPNKK 139 KF+NGVLDKA + NKK Sbjct: 121 KFINGVLDKAVFKMGYNKK 139 >UniRef50_C5TIT6 Transcription antitermination factor NusB n=5 Tax=Neisseriaceae RepID=C5TIT6_NEIFL Length = 142 Score = 148 bits (374), Expect = 6e-35, Method: Composition-based stats. Identities = 55/138 (39%), Positives = 80/138 (57%), Gaps = 1/138 (0%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK + RRRARE AVQA+Y +++ ++ ++D F +L G T+ Sbjct: 1 MK-SPRRRARELAVQAIYQAGINKTAAPEIAKNIHELSQTSNMDEELFNKLFFGTQTHAE 59 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 + P L R ++L +E+AVL +A +ELS + PY V INEAIE+ K+FG D H Sbjct: 60 EYMEKISPLLDRDEKDLSPIERAVLLVACHELSTMPETPYPVIINEAIEVTKTFGGTDGH 119 Query: 121 KFVNGVLDKAAPVIRPNK 138 KFVNG+LD+ A IRP++ Sbjct: 120 KFVNGILDQLASRIRPDE 137 >UniRef50_A8PLC7 Transcription antitermination factor NusB n=1 Tax=Rickettsiella grylli RepID=A8PLC7_9COXI Length = 148 Score = 148 bits (374), Expect = 7e-35, Method: Composition-based stats. Identities = 60/132 (45%), Positives = 90/132 (68%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 A++RAR AVQA+Y WQL+Q + ++ +FLA++++K VD YF ++ G+ + LD Sbjct: 12 AKQRARRFAVQAIYQWQLTQETFSVIQTKFLAQEEMKSVDTAYFTLIVQGILNDHELLDR 71 Query: 65 LMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 ++ ++ R L +L VE A+LR+ YEL S++PYKV +NEAIELAK FGA DS+K+VN Sbjct: 72 YLQSFVDRPLCQLDCVEWAILRLGTYELLNCSEIPYKVILNEAIELAKMFGATDSYKYVN 131 Query: 125 GVLDKAAPVIRP 136 G+L + A R Sbjct: 132 GILHRIAEKNRA 143 >UniRef50_Q1N2N9 Transcription antitermination protein NusB n=1 Tax=Bermanella marisrubri RepID=Q1N2N9_9GAMM Length = 128 Score = 148 bits (374), Expect = 7e-35, Method: Composition-based stats. Identities = 59/125 (47%), Positives = 85/125 (68%) Query: 14 VQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL 73 +QALY W L+ ++++E +FL + D+ VD YFR++L GV LD + P LSR Sbjct: 1 MQALYQWDLAGASLSNIEAEFLTDNDMSKVDTEYFRDILRGVPRELDDLDEKLAPCLSRN 60 Query: 74 LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPV 133 ++E+ VE+A+LR+ YEL R DVPY+V INE++EL+K FGA +SHKF+NG LDK A Sbjct: 61 MQEVTPVERAILRLGAYELLHRIDVPYRVVINESVELSKKFGANESHKFINGALDKLAQA 120 Query: 134 IRPNK 138 +R + Sbjct: 121 VRVVE 125 >UniRef50_B9L0C6 Transcription antitermination factor NusB n=2 Tax=Thermomicrobia (class) RepID=B9L0C6_THERP Length = 168 Score = 147 bits (373), Expect = 8e-35, Method: Composition-based stats. Identities = 45/134 (33%), Positives = 74/134 (55%), Gaps = 1/134 (0%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 RR+AR A+Q LY ++ + + +V + ++ + Y L+ GV + +D + Sbjct: 34 RRQARILALQILYEVDVANHSLEEVLERHRSQASIAQPVRRYAERLVTGVWADRERIDRM 93 Query: 66 MKPYLSR-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + +++L V++ +LRIA+YEL DVP K AINEA+E+AK +G E S +FVN Sbjct: 94 IAEAAPAFPVDQLPPVDRNILRIAIYELLHEPDVPLKAAINEAVEIAKQYGGESSSRFVN 153 Query: 125 GVLDKAAPVIRPNK 138 GVL A + + Sbjct: 154 GVLGTIAANLASSG 167 >UniRef50_B3QZ49 Sun protein n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QZ49_CHLT3 Length = 443 Score = 147 bits (373), Expect = 9e-35, Method: Composition-based stats. Identities = 35/129 (27%), Positives = 61/129 (47%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 +ARE AVQAL +++ F + ++ VD + +++ G +D ++K Sbjct: 3 KAREIAVQALREVEVNHAKSDTALNHFFSITALEPVDRAFTMQIVYGTLREKMKIDHVIK 62 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 + +++ K +LRI Y+L S VP A+NE++ELAK + VNGVL Sbjct: 63 QFYRHDYDKMDIDVKNILRIGAYQLLFLSKVPRWAAVNESVELAKKLKGQFLGNLVNGVL 122 Query: 128 DKAAPVIRP 136 + + Sbjct: 123 RNISNNLES 131 >UniRef50_Q2RIA9 N utilization substance protein B homolog n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=NUSB_MOOTA Length = 145 Score = 147 bits (373), Expect = 9e-35, Method: Composition-based stats. Identities = 47/135 (34%), Positives = 76/135 (56%), Gaps = 1/135 (0%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 RR AR A+QAL++ + Q L E ++ + + REL+ G +D + Sbjct: 3 RRAARAKALQALFAIDVGGTSPDMALEQVLEEGELPPRAMTFTRELVEGTMAKRDAIDAI 62 Query: 66 MKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 ++ Y LE L V++ +LR+ALYE+ + P +V INEAIELAK+F E++ +FVN Sbjct: 63 IRKYAVGWRLERLAAVDRNILRMALYEMQYHRETPVRVVINEAIELAKNFNNEEAGRFVN 122 Query: 125 GVLDKAAPVIRPNKK 139 G+LD A + +++ Sbjct: 123 GLLDNARKDLGLSEE 137 >UniRef50_D2LH50 NusB antitermination factor n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LH50_RHOVA Length = 185 Score = 147 bits (372), Expect = 1e-34, Method: Composition-based stats. Identities = 49/141 (34%), Positives = 78/141 (55%), Gaps = 7/141 (4%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAE-----QDVKDVDVLYFRELLAGVATNT 59 R RAR AVQALY +++Q D++ V +FL + D +FR+++ G+A Sbjct: 20 PRTRARLAAVQALYQMEMTQRDLSLVLQEFLGRRFETVEIYAGADRSFFRDIVEGIARGQ 79 Query: 60 AYLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 A +D + +L+ L + + +A+LR +YEL+ R+DVP + INE +E+AK F Sbjct: 80 AKIDLEIAAHLASGWKLSRIDSILRAILRSGVYELTDRNDVPARAVINEYVEIAKDFFGG 139 Query: 118 DSHKFVNGVLDKAAPVIRPNK 138 + VNGVLD+ A R + Sbjct: 140 EEPGVVNGVLDRVARAKRSRE 160 >UniRef50_B8FQ61 N utilization substance protein B homolog n=2 Tax=Desulfitobacterium hafniense RepID=NUSB_DESHD Length = 148 Score = 147 bits (372), Expect = 1e-34, Method: Composition-based stats. Identities = 46/140 (32%), Positives = 81/140 (57%), Gaps = 4/140 (2%) Query: 4 AARRRARECAVQALYSWQLSQN--DIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 +RR ARE A+Q L+ +++ D+ +++ E V + + + EL G T+ Sbjct: 1 MSRRLARETALQVLFQLEMTGESQDLKSAIHKWADEFAVPEGSIPFAEELAEGTLTHKEV 60 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D ++ L + V++ +LR+A YE+ R D+P +V INEAIE+AK +G+E+S Sbjct: 61 IDENLEKLSEGWSLARMANVDRNLLRLASYEILFRKDIPGRVTINEAIEIAKRYGSEESG 120 Query: 121 KFVNGVLDKAAPVI-RPNKK 139 KF+NG+LDK + + ++K Sbjct: 121 KFINGILDKVVESVNKKDEK 140 >UniRef50_C4KD91 NusB antitermination factor n=1 Tax=Thauera sp. MZ1T RepID=C4KD91_THASP Length = 166 Score = 147 bits (372), Expect = 1e-34, Method: Composition-based stats. Identities = 61/137 (44%), Positives = 81/137 (59%), Gaps = 1/137 (0%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAE-QDVKDVDVLYFRELLAGVATNTAY 61 ARRRARE A+Q +Y W LS N+ V+ +E +++ +D F LL G Sbjct: 21 KMARRRARELALQGVYQWLLSGNNATTVQRHLESETENLDKIDRELFVSLLRGATGAADE 80 Query: 62 LDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 L G +P LSR + EL +E A+L + +EL D PY+V INEAIELAK +G D HK Sbjct: 81 LRGCFEPLLSRPVAELSPIEHAILLLGTHELRHNLDTPYRVVINEAIELAKGYGGTDGHK 140 Query: 122 FVNGVLDKAAPVIRPNK 138 FVNGVLDK + +RP + Sbjct: 141 FVNGVLDKLSTRLRPEE 157 >UniRef50_Q1D350 N utilization substance protein B homolog n=2 Tax=Cystobacterineae RepID=NUSB_MYXXD Length = 140 Score = 147 bits (372), Expect = 1e-34, Method: Composition-based stats. Identities = 50/138 (36%), Positives = 82/138 (59%), Gaps = 5/138 (3%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFL---AEQDVKDVDV-LYFRELLAGVATNT 59 ARR RE A+QALY +++ A+ E + +D D + REL+ GV ++ Sbjct: 2 GARRTGRERALQALYQLEMATATTAEALESAWSAAEESNKRDPDAVKFARELVEGVQSHR 61 Query: 60 AYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 +D L++ + L+ + ++++ VLR+ ++EL R D+P KV+INEA+EL K+FG E+ Sbjct: 62 DEIDQLIERHSHNWRLDRMSRIDRNVLRLGIFELKYRPDIPRKVSINEAVELGKNFGNEE 121 Query: 119 SHKFVNGVLDKAAPVIRP 136 S FVNG+LD+ A + Sbjct: 122 SSAFVNGLLDRVAVALNK 139 >UniRef50_Q5X720 N utilization substance protein B homolog n=6 Tax=Legionella RepID=NUSB_LEGPA Length = 147 Score = 147 bits (372), Expect = 1e-34, Method: Composition-based stats. Identities = 52/133 (39%), Positives = 83/133 (62%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 +RRAR+ A+QALY W +S D+ ++E QF ++ VD YF LL G+ T+ L+ Sbjct: 9 KRRARKFALQALYQWLMSGTDLHEIEAQFRTINNMDKVDGEYFCRLLYGIPTHVEALEAS 68 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 + PYL R + L +E VLRI +EL ++PYKV ++E++ L K FG+++ +++VNG Sbjct: 69 LLPYLDREINALNPIELTVLRIGSFELFHCPEIPYKVILDESVSLTKEFGSQEGYRYVNG 128 Query: 126 VLDKAAPVIRPNK 138 VL+ A +R + Sbjct: 129 VLNNLAKQVRSVE 141 >UniRef50_A5FQ51 N utilization substance protein B homolog n=5 Tax=Dehalococcoides RepID=NUSB_DEHSB Length = 143 Score = 147 bits (371), Expect = 2e-34, Method: Composition-based stats. Identities = 49/133 (36%), Positives = 79/133 (59%), Gaps = 1/133 (0%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 +RR+ARE +QALY L+ ++ DV + L E + +V + L V + L Sbjct: 2 TTSRRKAREIVLQALYEQDLAGHNAEDVLKRLLTENPQTEENVEFIFRLTNAVVKHKDLL 61 Query: 63 DGLMKPY-LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D ++ + + +E+L +++ VLR+A++E+ +DVP KVAINEA+ELAKSFG S + Sbjct: 62 DENIRQFASAWPVEQLSYIDRNVLRLAIFEIIHENDVPVKVAINEAVELAKSFGGNSSAR 121 Query: 122 FVNGVLDKAAPVI 134 F+NGVL + + Sbjct: 122 FINGVLSSVSKAL 134 >UniRef50_C4ZEV6 Sun protein n=4 Tax=Clostridiales RepID=C4ZEV6_EUBR3 Length = 469 Score = 146 bits (370), Expect = 2e-34, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 51/128 (39%), Gaps = 1/128 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNTAYLDGLMKP 68 RE A++ L V L + + D + L+ G LD ++ Sbjct: 42 RELALEMLIEINERGAFSHIVLRSVLDKYQYLSKQDRAFMTRLVDGTIEYMLQLDYIIDS 101 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 + + ++ + +LR+++Y++ VP NEA++LAK FVNGVL Sbjct: 102 FSKTKVRKMKPFIRNLLRMSVYQIKYMDAVPDSAVCNEAVKLAKRHKFAQLSGFVNGVLR 161 Query: 129 KAAPVIRP 136 A I Sbjct: 162 NIARNIDS 169 >UniRef50_C8W0Z5 NusB antitermination factor n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W0Z5_DESAS Length = 156 Score = 146 bits (370), Expect = 2e-34, Method: Composition-based stats. Identities = 40/131 (30%), Positives = 70/131 (53%), Gaps = 1/131 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +RR R+ A+Q L+ ++ D + +A+ + + R+L+ G + +D Sbjct: 1 MSRREGRQIAMQILFQIEVGGIDPEEAFKNTVADSTCPVPIMEFARQLVFGTLGHLKEID 60 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ L+ + V+K ++R+ALYE+ ++P V+ NEAIELAK FG E+S KF Sbjct: 61 RVISEISKGWRLDRIANVDKTLIRMALYEIFYEDNIPLNVSANEAIELAKIFGGEESGKF 120 Query: 123 VNGVLDKAAPV 133 VNG++ K Sbjct: 121 VNGIIGKVVQK 131 >UniRef50_A6W2L6 N utilization substance protein B homolog n=4 Tax=Gammaproteobacteria RepID=NUSB_MARMS Length = 174 Score = 146 bits (370), Expect = 2e-34, Method: Composition-based stats. Identities = 66/135 (48%), Positives = 94/135 (69%), Gaps = 2/135 (1%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFL--AEQDVKDVDVLYFRELLAGVATNTAYLD 63 R +R A+QA+Y WQ+++ ++++E QF+ ++D+ D +YFRELL GV + LD Sbjct: 27 RSASRRLALQAVYQWQMNKTAVSEIETQFVIDQDRDMDSCDKVYFRELLQGVTASAKKLD 86 Query: 64 GLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 L + L R L EL +E AV+RI YELS+R DVPY+VAINE++ELAK FGA +SHK+V Sbjct: 87 TLFEELLDRPLSELDPIELAVMRIGSYELSQRLDVPYRVAINESVELAKGFGATESHKYV 146 Query: 124 NGVLDKAAPVIRPNK 138 NG+LDK A +R + Sbjct: 147 NGILDKLAQRVRREE 161 >UniRef50_Q30YL1 N utilization substance protein B homolog n=5 Tax=Desulfovibrionales RepID=NUSB_DESDG Length = 154 Score = 146 bits (369), Expect = 2e-34, Method: Composition-based stats. Identities = 54/141 (38%), Positives = 80/141 (56%), Gaps = 7/141 (4%) Query: 4 AARRRARECAVQALYSWQLSQN-DIADVEYQFLAEQDVKDVD-----VLYFRELLAGVAT 57 ++RR +R A Q LY S D+A ++ + A DV D V + EL+ G T Sbjct: 8 SSRRSSRALAFQVLYGLNFSPAKDLAQLQEAYCASPDVSDRGGEAHPVGFAWELIEGTWT 67 Query: 58 NTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 N LD ++ + +E +G++E +LR+A+YE+ R+DVP KVAINE IEL+K FG Sbjct: 68 NQKALDEIITRFAQNWRVERIGKIELTILRLAVYEMLYRADVPPKVAINEGIELSKQFGD 127 Query: 117 EDSHKFVNGVLDKAAPVIRPN 137 + S F+NG+LD AA + Sbjct: 128 DKSRNFINGILDAAAKALEAG 148 >UniRef50_Q1H424 N utilization substance protein B homolog n=2 Tax=Betaproteobacteria RepID=NUSB_METFK Length = 154 Score = 146 bits (369), Expect = 2e-34, Method: Composition-based stats. Identities = 56/134 (41%), Positives = 81/134 (60%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 +RR++RE ++ +Y ++Q D + + + + D D YFR+LL GVA + LD Sbjct: 15 SRRKSRELVLKGIYLGLMNQKDTSVIIRELADDPDFDRADYEYFRQLLEGVAESIDELDA 74 Query: 65 LMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + L R + EL +E A+L IA YEL +PY+VAINE +ELAK +G D HK+VN Sbjct: 75 RLAGLLDRQVSELSPIEHAILCIAAYELIHDVTIPYRVAINEGVELAKLYGGTDGHKYVN 134 Query: 125 GVLDKAAPVIRPNK 138 GVLDK A RP++ Sbjct: 135 GVLDKIAAEARPDE 148 >UniRef50_C8WLN1 NusB antitermination factor n=2 Tax=Coriobacteriaceae RepID=C8WLN1_EGGLE Length = 195 Score = 146 bits (369), Expect = 2e-34, Method: Composition-based stats. Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 3/139 (2%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 K R AR A+Q LY+ +++ + + D Y +L+ GV ++ Sbjct: 4 KRHERTSARRAALQVLYTSEITDESP-AAIAEGNSRLDEDGPLPEYALKLVLGVESHRCA 62 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED-S 119 +D + L + V++++LR+A +E+ DVP V INEA+ELAK FG ED S Sbjct: 63 IDNHLAATSENWSLARMPIVDRSILRLATFEMMYIDDVPTSVTINEAVELAKDFGGEDES 122 Query: 120 HKFVNGVLDKAAPVIRPNK 138 H+FVNG+L + A ++ + Sbjct: 123 HRFVNGILGRIAKMLEGEE 141 >UniRef50_B3QV72 N utilization substance protein B homolog n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=NUSB_CHLT3 Length = 211 Score = 146 bits (369), Expect = 3e-34, Method: Composition-based stats. Identities = 42/136 (30%), Positives = 73/136 (53%), Gaps = 2/136 (1%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKD-VDVLYFRELLAGVATNTAYLD 63 +RR+ RE A+Q LY++++ + + V + E V D + +++ V N +D Sbjct: 4 SRRQIRELAMQVLYAYEVRKEKVDKVAKGIIPEDVVADIKAKDFIFKIINSVIQNIQDID 63 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + + L + ++K ++RIA+ E+ DVP KV+INEAIE+AK + + S KF Sbjct: 64 THIAKHADNWELNRMAIIDKNLMRIAIAEMLYLDDVPPKVSINEAIEIAKRYSTDKSSKF 123 Query: 123 VNGVLDKAAPVIRPNK 138 VNG+LD ++ Sbjct: 124 VNGILDATYNEVKSKG 139 >UniRef50_D2RNU3 Sun protein n=3 Tax=Veillonellaceae RepID=D2RNU3_ACIFE Length = 446 Score = 145 bits (367), Expect = 4e-34, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 57/132 (43%), Gaps = 1/132 (0%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK A+ RE A+ L L Q L + +D EL+ G Sbjct: 1 MKGTAK-NPREAALLILEQIFLRGAYANLALDQGLRGATLSPLDRKLTTELVYGTVKTMG 59 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD + ++R L +L + +LR+ Y+L +P A NE+++LAK + E + Sbjct: 60 TLDWYLSRVVNRPLRKLDPLVLVILRLGAYQLLYLDRIPASAACNESVKLAKKWVHEGAG 119 Query: 121 KFVNGVLDKAAP 132 K VNG L + A Sbjct: 120 KLVNGALRQLAR 131 >UniRef50_Q1ISD3 N utilization substance protein B homolog n=2 Tax=Acidobacteria RepID=NUSB_ACIBL Length = 146 Score = 145 bits (367), Expect = 4e-34, Method: Composition-based stats. Identities = 38/141 (26%), Positives = 71/141 (50%), Gaps = 2/141 (1%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFL-AEQDVKDVDVLYFRELLAGVATNT 59 +K RR++RE A+Q L+ + + VE F +D+++ + +L + Sbjct: 3 IKTGTRRKSRELALQMLFQMDMGKQSADHVEKTFWAERKDLEEEVRSFAIDLFHVAEKRS 62 Query: 60 AYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 +D L++ + +E + V++ +LR A E P V INE++E+A+ F + + Sbjct: 63 EEIDKLIEKHAEHWRMERMAAVDRNILRGACAEFMGFPKTPKPVVINESLEIARRFSSPE 122 Query: 119 SHKFVNGVLDKAAPVIRPNKK 139 S +F+NGVLD A + +K Sbjct: 123 SVQFINGVLDSVARELDAERK 143 >UniRef50_A5F5Z6 N utilization substance protein B homolog n=91 Tax=Gammaproteobacteria RepID=NUSB_VIBC3 Length = 156 Score = 145 bits (367), Expect = 4e-34, Method: Composition-based stats. Identities = 79/149 (53%), Positives = 105/149 (70%), Gaps = 14/149 (9%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDV--------------DVLY 47 KPAARR AR+ A+QA+YSWQ+++ ++A +E QFL + DV Y Sbjct: 6 KPAARRNARQFALQAIYSWQITKENVATIEEQFLTSGKYDEEEHRAAEPALAAPETDVSY 65 Query: 48 FRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEA 107 FR+LLAGV N LD ++P++SR +++L +E A+LR+A+YE+++R DVPYKV INEA Sbjct: 66 FRDLLAGVVLNHNELDSKLRPFVSRPMQDLDMMELALLRLAMYEMTRREDVPYKVVINEA 125 Query: 108 IELAKSFGAEDSHKFVNGVLDKAAPVIRP 136 IELAK F AEDSHKFVNGVLDKAAP +R Sbjct: 126 IELAKVFAAEDSHKFVNGVLDKAAPHVRK 154 >UniRef50_C7LSH4 NusB antitermination factor n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LSH4_DESBD Length = 154 Score = 145 bits (367), Expect = 4e-34, Method: Composition-based stats. Identities = 50/142 (35%), Positives = 72/142 (50%), Gaps = 6/142 (4%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVE----YQFLAEQDVK-DVDVLYFRELLAGVAT 57 RR R A Q +YS Q D F E++ + Y L+ GV Sbjct: 2 THNRRHQRRFAFQVIYSLVFGQKMSKDSLIKSFDNFWTEEEFDMERQDSYAWTLVEGVFD 61 Query: 58 NTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 N +D ++ + L + +VE +LR++L+E+ D+P KVA+NEAIELAK FG Sbjct: 62 NYDSIDEIITQHSQHWKLNRIAKVELTILRLSLFEMLFCPDIPIKVAMNEAIELAKDFGD 121 Query: 117 EDSHKFVNGVLDKAAPVIRPNK 138 ++S FVNGVLD AA + N+ Sbjct: 122 DNSKTFVNGVLDAAAKGAQRNE 143 >UniRef50_A8ZTU6 N utilization substance protein B homolog n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=NUSB_DESOH Length = 154 Score = 145 bits (366), Expect = 5e-34, Method: Composition-based stats. Identities = 47/139 (33%), Positives = 77/139 (55%), Gaps = 4/139 (2%) Query: 4 AARRRARECAVQALYSWQLSQN---DIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 A+RRR+RE A+Q L+S+ L+ D F A ++ + + +F L GV Sbjct: 2 ASRRRSRELALQFLFSYDLNAAGAGDFDAWMEDFCARFNLSEKNFPHFFTLAQGVKNRWE 61 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 L+ L+ L + V++ V+RIA++E+ DVP +VAINEAIE+ K +G ++S Sbjct: 62 KLNDLLAESSEHWKLSRMSGVDRNVMRIAIFEMLYCDDVPPRVAINEAIEIGKKYGTDES 121 Query: 120 HKFVNGVLDKAAPVIRPNK 138 F+NGVLD+ + ++ Sbjct: 122 GAFINGVLDRINKELGGSE 140 >UniRef50_B5ELV9 NusB antitermination factor n=3 Tax=Acidithiobacillus RepID=B5ELV9_ACIF5 Length = 147 Score = 145 bits (366), Expect = 6e-34, Method: Composition-based stats. Identities = 60/141 (42%), Positives = 85/141 (60%), Gaps = 3/141 (2%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNT 59 MK + RR AR+ AVQALY WQ++ A++E QF ++ + ++ DV +F+ L GV Sbjct: 1 MKISRRRLARQAAVQALYQWQMNPGHCAEIELQFTSDPERLQGADVAFFKSLWQGVCAAI 60 Query: 60 AYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 + LD + + R +E+ +VE+A+LR+A EL PY+V INEAIEL K FG E Sbjct: 61 SELDPAIAEEVQDRRWADEVSEVERAILRLAACELRDYPQTPYRVIINEAIELDKDFGGE 120 Query: 118 DSHKFVNGVLDKAAPVIRPNK 138 H+FVN VLDK A R + Sbjct: 121 QGHRFVNAVLDKLAQRWRSAE 141 >UniRef50_B0MGA0 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0MGA0_9FIRM Length = 448 Score = 144 bits (365), Expect = 6e-34, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 51/128 (39%), Gaps = 1/128 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDV-DVLYFRELLAGVATNTAYLDGLMKP 68 RE A+ L + + L + + D +F L G +D ++ Sbjct: 5 RELALDVLMKIDKKEELSHIAIGETLEKYQFSEKKDRAFFTRLCQGTLERRLTIDYVIDL 64 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 Y + ++ + +++LR+ ++ +P A NE ++LAK G FVNGVL Sbjct: 65 YSKTKVRKMKPLVRSLLRMGACQILFMDHIPDSAACNECVKLAKKRGFSKLSGFVNGVLR 124 Query: 129 KAAPVIRP 136 + + Sbjct: 125 TISRQKQE 132 >UniRef50_C6D4F5 Sun protein n=87 Tax=Bacilli RepID=C6D4F5_PAESJ Length = 491 Score = 144 bits (365), Expect = 6e-34, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 55/132 (41%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 +PA R RE A+ L + + L E ++ D EL+ G Sbjct: 33 RPARVRTPRELALDTLVKVAETGAYSNLQLNRVLQEAQLQRADAALVTELVYGTIQRQLT 92 Query: 62 LDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 LD + + ++ L +L +LR++ Y+L +P A+NEA+ +AK G + Sbjct: 93 LDHWLGKFAAKGLRKLEPWVHQLLRMSAYQLLYLDRIPAHAAVNEAVTIAKRRGHQGISG 152 Query: 122 FVNGVLDKAAPV 133 VNG+L Sbjct: 153 MVNGILRSIDRN 164 >UniRef50_A6Q4Q9 N utilization substance protein B homolog n=20 Tax=Epsilonproteobacteria RepID=NUSB_NITSB Length = 139 Score = 144 bits (365), Expect = 7e-34, Method: Composition-based stats. Identities = 44/137 (32%), Positives = 75/137 (54%), Gaps = 2/137 (1%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 A R +ARE + LY++ L +I L E+ +++ + L G + +D Sbjct: 2 ATRHQAREAVIGLLYAYDLGNPEIKKFAEDILEEKKIRNKQREFALALFKGTVEHLDTID 61 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++K +L +E +G +E+A+LR+ +YEL +D+ + INEA+ELAK G + S KF Sbjct: 62 EMIKKHLESWDMERVGHIERAILRLGVYELFY-TDLDPAIVINEAVELAKKLGTDQSPKF 120 Query: 123 VNGVLDKAAPVIRPNKK 139 +NGVLD A ++ + Sbjct: 121 INGVLDAIAKEVKNGSQ 137 >UniRef50_Q3A4L2 N utilization substance protein B homolog n=2 Tax=Desulfuromonadales RepID=NUSB_PELCD Length = 156 Score = 144 bits (364), Expect = 9e-34, Method: Composition-based stats. Identities = 47/153 (30%), Positives = 77/153 (50%), Gaps = 18/153 (11%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKD----------------VD 44 M RR RE A++ +YS+ + + + F + +D Sbjct: 1 MASGMRRTGRELAIKIIYSFDGTG-SVEALLATFWSNFRFRDDVLGEPLEDSSQAVAEPV 59 Query: 45 VLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVA 103 + +L+ GVA N +DGL+ + + LE + +V+ A+LR+A YEL DVP V Sbjct: 60 REFAEDLVRGVAENLEKIDGLIGEFSTNWSLERMARVDLAILRMATYELLGHLDVPVSVI 119 Query: 104 INEAIELAKSFGAEDSHKFVNGVLDKAAPVIRP 136 INEA+E+ K +G +++ FVNG+LD+ + RP Sbjct: 120 INEAVEIGKRYGTKETPSFVNGILDRISRTCRP 152 >UniRef50_A0Q099 N utilization substance protein B homolog n=3 Tax=Clostridium RepID=NUSB_CLONN Length = 133 Score = 143 bits (363), Expect = 1e-33, Method: Composition-based stats. Identities = 42/132 (31%), Positives = 78/132 (59%), Gaps = 3/132 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLA--EQDVKDVDVLYFRELLAGVATNTAY 61 RR++RE A++ L+ +++ + +++ F + ++++VD +Y +++ G+ N Sbjct: 1 MNRRKSREVAMKLLFEMSINKEEFSEILKNFKENTDTNMENVDFIYINKIVNGIEQNKED 60 Query: 62 LDGLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D ++ L L L +++ +LRI+ YE+ D+P KVA+NEAIELAK + A++S Sbjct: 61 IDKKIEENLTKWKLNRLSKIDLTILRISTYEIMFMEDIPNKVAVNEAIELAKKYSADNSP 120 Query: 121 KFVNGVLDKAAP 132 FVNGVL Sbjct: 121 AFVNGVLGNMIK 132 >UniRef50_UPI00006A2BCA UPI00006A2BCA related cluster n=1 Tax=Xenopus (Silurana) tropicalis RepID=UPI00006A2BCA Length = 151 Score = 143 bits (363), Expect = 1e-33, Method: Composition-based stats. Identities = 52/136 (38%), Positives = 71/136 (52%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 +AR RARE A+QALY + +N+ + ++ D ++ LL G L Sbjct: 11 KSARSRAREFALQALYQHLVGRNEASAIDLFTRDLAGFHKADAAHYDALLHGCVRTEDAL 70 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 D L+ P L R L +E AV+ I YE DVP++V +NE IELAK FG D HK+ Sbjct: 71 DALIVPQLDRPLAAFSPIEHAVMWIGAYEFQHCMDVPWRVTLNECIELAKEFGGTDGHKY 130 Query: 123 VNGVLDKAAPVIRPNK 138 VN VL AP +R + Sbjct: 131 VNAVLGGLAPRLRAAE 146 >UniRef50_A8MH88 Sun protein n=7 Tax=Clostridiaceae RepID=A8MH88_ALKOO Length = 445 Score = 143 bits (363), Expect = 1e-33, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 1/124 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 RE A++ LY +++ + L + +D EL+ GV N Y+D ++ + Sbjct: 4 REGALKVLYEINVNEAFSNIALNKELNNESYNLLDRNLLTELVYGVLENQIYIDHVLSQF 63 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 + L+++ +LR+ +Y+L VP A+NE + L+K + + + F+NGVL Sbjct: 64 SNFQLDKMNPYTLNLLRLGIYQLLFLDRVPSFAAVNETVNLSKKYC-KKTTGFINGVLRN 122 Query: 130 AAPV 133 Sbjct: 123 VQRN 126 >UniRef50_B5JUN2 Transcription antitermination factor NusB n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JUN2_9GAMM Length = 188 Score = 143 bits (362), Expect = 2e-33, Method: Composition-based stats. Identities = 58/145 (40%), Positives = 88/145 (60%), Gaps = 7/145 (4%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQ-------DVKDVDVLYFRELLAG 54 + ARR+ R+ +QALY + + + QF ++ D+ VD +F+ L+ Sbjct: 44 RTEARRKTRQRILQALYQCYFNPLPSSKLVQQFYDDEVGEEEGNDMFGVDADFFQAALST 103 Query: 55 VATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 T LD L +L ++ L VE +LR+A++ELS+R DVP +V INEA+ELAKS+ Sbjct: 104 CVDKTEQLDELYCAHLKMPIDRLDPVELCILRLAVFELSERLDVPRRVVINEAVELAKSY 163 Query: 115 GAEDSHKFVNGVLDKAAPVIRPNKK 139 GAED HKF+NGV+DK A +RP+++ Sbjct: 164 GAEDGHKFINGVIDKTARDLRPHEQ 188 >UniRef50_C0GE32 NusB antitermination factor n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GE32_9FIRM Length = 138 Score = 143 bits (362), Expect = 2e-33, Method: Composition-based stats. Identities = 48/136 (35%), Positives = 79/136 (58%), Gaps = 1/136 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +RR ARE A + L+ + + +N++ Q + E ++ V + R+L+ G N +D Sbjct: 1 MSRRLAREIAFKTLFQYDIGKNEVEPTISQLIEENGLEGAGVEFSRQLVLGTLKNLEAID 60 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + YL + L L V++ VLR+A +E+ R D+P V INEA+EL+K+F +E++ KF Sbjct: 61 KALAGYLQKWELGRLAAVDRNVLRLAAFEILYREDIPAAVTINEALELSKAFHSEEAAKF 120 Query: 123 VNGVLDKAAPVIRPNK 138 +NGVLDK A + Sbjct: 121 LNGVLDKLARHHEGKE 136 >UniRef50_D1CCN3 NusB antitermination factor n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CCN3_THET1 Length = 153 Score = 143 bits (361), Expect = 2e-33, Method: Composition-based stats. Identities = 47/132 (35%), Positives = 78/132 (59%), Gaps = 1/132 (0%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R +AR A+Q LY + ++ ++ + E+++ + Y +L GV N D L Sbjct: 12 RHQARALAMQVLYEAETTRKQPYEILQRRRNEENIPEQVHAYASDLAIGVWQNRKEYDSL 71 Query: 66 MKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + + + ++++ +V++ +LRIA++E+ +R+DVP AINEA+ELAK +GAE S KFVN Sbjct: 72 ITRFTPTWTIDQMAKVDRNILRIAVHEMLRRNDVPIAAAINEAVELAKEYGAEASPKFVN 131 Query: 125 GVLDKAAPVIRP 136 GVL A I Sbjct: 132 GVLGAIADAIES 143 >UniRef50_Q2RK22 Sun protein n=3 Tax=Clostridia RepID=Q2RK22_MOOTA Length = 457 Score = 143 bits (361), Expect = 2e-33, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 50/125 (40%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 ARE A+Q +Y + L + + EL LD + Sbjct: 10 AREAALQVIYRVTEEGAYAGLALDEVLKSAGLDGRERALATELAYSAIKAWGTLDWALGL 69 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 +L + LE+L + VLR+ +L +P + AI E +ELAK +G + VNGVL Sbjct: 70 FLRQPLEKLPPWIRCVLRLGATQLLYVPRIPPRAAIYETVELAKKYGHRGTTGLVNGVLR 129 Query: 129 KAAPV 133 Sbjct: 130 HLDRQ 134 >UniRef50_D2L8L5 NusB antitermination factor n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L8L5_9DELT Length = 167 Score = 143 bits (361), Expect = 2e-33, Method: Composition-based stats. Identities = 49/142 (34%), Positives = 73/142 (51%), Gaps = 7/142 (4%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAE------QDVKDVDVLYFRELLAGVAT 57 A+RR+AR+ A + LY + A + + EL+ GV Sbjct: 19 ASRRKARKQAFECLYGLIFESAADERSLRRVFARCPHDVMEGEDGAGQAFAWELVQGVWQ 78 Query: 58 NTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 N LD L+ + L + +VE +LR+ALYE+ RSD+P +VA+NEAIELAK +G Sbjct: 79 NQRELDALIVKFSKNWKLSRIAKVELTILRLALYEILHRSDIPLRVALNEAIELAKRYGD 138 Query: 117 EDSHKFVNGVLDKAAPVIRPNK 138 E+S F+NG+LD A + + Sbjct: 139 ENSRNFINGILDAVAKAVDSGE 160 >UniRef50_Q3BXH9 N utilization substance protein B homolog n=20 Tax=Xanthomonadaceae RepID=NUSB_XANC5 Length = 162 Score = 142 bits (360), Expect = 3e-33, Method: Composition-based stats. Identities = 63/124 (50%), Positives = 81/124 (65%) Query: 15 QALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLL 74 QA+Y+WQ+S V QF EQ + D+ YF L+ GV +N A LD + PYL R + Sbjct: 30 QAVYAWQISGGFAKQVIAQFAHEQAHEVADLAYFENLVEGVLSNRAELDTALTPYLDRSV 89 Query: 75 EELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVI 134 EE+ +E+AVLR+A YEL R DVPY+V INEAIE AK FG+E H +VNGVLD+AA Sbjct: 90 EEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRFGSEHGHTYVNGVLDRAAVEW 149 Query: 135 RPNK 138 R + Sbjct: 150 RKVE 153 >UniRef50_C1DB31 N utilization substance protein B homolog n=3 Tax=Neisseriaceae RepID=NUSB_LARHH Length = 165 Score = 142 bits (360), Expect = 3e-33, Method: Composition-based stats. Identities = 58/138 (42%), Positives = 83/138 (60%), Gaps = 1/138 (0%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK RRRARE AVQ +Y WQL+ A +E + D FR LL GV + Sbjct: 1 MKT-PRRRAREFAVQGIYQWQLNALTPATIEKNLRDNEQFAKADEALFRTLLYGVLNDPV 59 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 ++ + + R E++ VE+AVL +A +EL+++++ P V INEAIE+AK+FG + H Sbjct: 60 RIESAIASHFERAPEDVSPVERAVLLMAAFELTQQAETPLAVIINEAIEIAKTFGGAEGH 119 Query: 121 KFVNGVLDKAAPVIRPNK 138 +FVNGVLDK A +RP + Sbjct: 120 RFVNGVLDKYAAEVRPEE 137 >UniRef50_B0S1M1 N utilization substance protein B homolog n=2 Tax=Finegoldia magna RepID=NUSB_FINM2 Length = 137 Score = 142 bits (360), Expect = 3e-33, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 70/134 (52%), Gaps = 1/134 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +RR++R+ A+Q +Y ++ + +F Q++ D+ +F+E++ + + Sbjct: 1 MSRRQSRKSAMQLIYEMNMNGDYDKQRIEEFCKYQNINKNDIEFFKEIVLNFIEHIDDIV 60 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 +++ + L+ + +++ ++L++ + E+ P VAINEA+ELAK + E S+ F Sbjct: 61 NIIENNTKQWNLDRINKLDLSILQVGVCEILYVESTPDSVAINEAVELAKEYSTEKSYSF 120 Query: 123 VNGVLDKAAPVIRP 136 +NG+L Sbjct: 121 INGILGSVLKRKEN 134 >UniRef50_B0A9Y2 Putative uncharacterized protein n=2 Tax=Clostridium RepID=B0A9Y2_9CLOT Length = 441 Score = 142 bits (360), Expect = 3e-33, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 1/128 (0%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 ++R A + L+ + +QN + + ++ + D + E++ GV N YLD ++ Sbjct: 2 KSRNLAYKVLFDIEKNQNYSNMAINKHFKDCNLDNRDRGFATEIIYGVVENKIYLDYIID 61 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 +L K +LR+ +Y++ V A+NE + L K S FVN VL Sbjct: 62 KLSKIKSNKLNLKVKILLRMGIYQILFLDSVSDYAAVNETVNLTKKL-DNRSAGFVNAVL 120 Query: 128 DKAAPVIR 135 Sbjct: 121 RNVIRQKE 128 >UniRef50_Q0AZF7 N utilization substance protein B homolog n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=NUSB_SYNWW Length = 134 Score = 142 bits (360), Expect = 3e-33, Method: Composition-based stats. Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 1/128 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +RR+ARE A + ++ Q D + + + + + +L+ G A +D Sbjct: 1 MSRRKARETAFKVVFQVDQVQADAKKAFDYLVLHDKLAEKNQGFSWDLIQGTLEKQAEID 60 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ Y L+ + V++ ++R+A YE+ D VAI+EAIE+AK +G E S F Sbjct: 61 QMIASYSREWALDRMSSVDRNIMRVAAYEILYLEDSQAVVAIDEAIEIAKKYGDEGSGSF 120 Query: 123 VNGVLDKA 130 VN +LDK Sbjct: 121 VNAILDKI 128 >UniRef50_A0LI21 N utilization substance protein B homolog n=4 Tax=Deltaproteobacteria RepID=NUSB_SYNFM Length = 151 Score = 142 bits (359), Expect = 3e-33, Method: Composition-based stats. Identities = 44/143 (30%), Positives = 77/143 (53%), Gaps = 7/143 (4%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVE------YQFLAEQDVKDVDVLYFRELLAGVAT 57 RRR+RE A+Q LY +++ + + + V + E++ GV+ Sbjct: 2 GRRRRSREMALQVLYQMEMAVLPPEEALGLYYQLFDDDEKHRVPAEVRPFAEEIVRGVSL 61 Query: 58 NTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 + A +D ++ L + V++ +LRIA++E+ D+P KV+INEAI+L K+FG+ Sbjct: 62 HRARIDEMITSASEHWRLARMSLVDRNILRIAVFEMLFCFDIPPKVSINEAIDLGKTFGS 121 Query: 117 EDSHKFVNGVLDKAAPVIRPNKK 139 DS F+NG+LD P++ N + Sbjct: 122 PDSGAFINGILDHILPLLEANGR 144 >UniRef50_C4L3F7 N utilization substance protein B homolog n=2 Tax=Exiguobacterium RepID=NUSB_EXISA Length = 128 Score = 142 bits (359), Expect = 3e-33, Method: Composition-based stats. Identities = 46/134 (34%), Positives = 72/134 (53%), Gaps = 8/134 (5%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK R ARE A+Q L+ ++S+ ++ + L ++ ++ +L+ G + Sbjct: 1 MK---RHEAREKAIQTLFQIEVSKLEVDEAIEFALDGEESDP----FYEQLVTGTLEHIE 53 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D L+ L L+ LG VE+ +LR+A +EL +P V INEA+ELAKSFG E++ Sbjct: 54 DIDALLVENLKNWRLDRLGNVERTILRMATFELLYVETIPENVTINEAVELAKSFGDEEA 113 Query: 120 HKFVNGVLDKAAPV 133 K VNGVL Sbjct: 114 GKLVNGVLGNIIKE 127 >UniRef50_B3EF03 Sun protein n=11 Tax=Chlorobiaceae RepID=B3EF03_CHLL2 Length = 451 Score = 142 bits (358), Expect = 4e-33, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 5/136 (3%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 +RE A++ L + + + ++ L+ + D EL+ GV LD + Sbjct: 9 SRELALKVLQNIESGEKKSGTALHEQLSHTSLNQNDRALATELVNGVLRRRLTLDTFIGR 68 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 Y E+ V K +LRI Y+L +P+ A+NE++ LA+ + E K VN VL Sbjct: 69 YYHHRYEKAAPVLKNILRIGAYQLIYLDRIPHWAAVNESVSLARRYKGEHMAKLVNAVLR 128 Query: 129 K-----AAPVIRPNKK 139 + + P+ K Sbjct: 129 NITPETISADLDPSGK 144 >UniRef50_P94464 Ribosomal RNA small subunit methyltransferase B n=24 Tax=Bacillales RepID=RSMB_BACSU Length = 447 Score = 142 bits (358), Expect = 4e-33, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 67/133 (50%), Gaps = 4/133 (3%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK + R+ A++AL + +Q + + ++ D + EL+ G N Sbjct: 1 MKKTS---VRDIALEALIKLEQNQAYSNLLLKSVIKSNELSDQNRGLLTELVYGTLQNKI 57 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD ++KP++++ +++ +LR++LY++ +P + AI+EA+E+AK G + Sbjct: 58 ALDYMLKPFINKP-QKVKPWVIQLLRLSLYQMEYLEKIPDRAAIHEAVEIAKIRGHKGIA 116 Query: 121 KFVNGVLDKAAPV 133 FVNGVL Sbjct: 117 SFVNGVLRSIQRE 129 >UniRef50_Q2LQK4 N utilization substance protein B homolog n=1 Tax=Syntrophus aciditrophicus SB RepID=NUSB_SYNAS Length = 161 Score = 142 bits (358), Expect = 5e-33, Method: Composition-based stats. Identities = 42/137 (30%), Positives = 74/137 (54%), Gaps = 3/137 (2%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 M+ RR ARE A+Q LYS ++ + + + + A + + L+ G + Sbjct: 12 MR--QRRIAREIALQVLYSLEVVEMEAGEAIELYWAHYEAPMDARPFSSLLIEGAWKHRD 69 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D L+ + + + +V+K++LR+A++EL D+P KV +NEAI+L K +G+E+S Sbjct: 70 QIDSLIGGCSANWSIARMSKVDKSILRMAVFELCFCEDIPPKVTMNEAIDLGKVYGSENS 129 Query: 120 HKFVNGVLDKAAPVIRP 136 F+NG+LD I Sbjct: 130 GSFINGILDALYAKIHK 146 >UniRef50_B1H071 Transcription antitermination factor NusB n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1H071_UNCTG Length = 142 Score = 141 bits (357), Expect = 7e-33, Method: Composition-based stats. Identities = 44/136 (32%), Positives = 73/136 (53%), Gaps = 2/136 (1%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 RR+AREC++ LY+ I + F + ++ +L GV N LD Sbjct: 2 GTRRKARECSLHMLYAVDNCNVPIESIYNSFAVYFPKGEAYRMFALDLFKGVCDNKEDLD 61 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 L+K +E + V++ ++R+A YE+ +++P +V I+EA+E++K + +DS KF Sbjct: 62 SLIKQCAKNWEIERMAAVDRNIIRLATYEIMATTNIPIRVIIDEAVEISKKYSTKDSSKF 121 Query: 123 VNGVLDKAAPVIRPNK 138 VNG+LDK IR K Sbjct: 122 VNGILDKL-KKIRTQK 136 >UniRef50_A6CAX2 Transcription antitermination protein NusB n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CAX2_9PLAN Length = 171 Score = 140 bits (355), Expect = 9e-33, Method: Composition-based stats. Identities = 40/129 (31%), Positives = 62/129 (48%), Gaps = 2/129 (1%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R++AR VQ LY L+ + + + + E + EL GV LD Sbjct: 4 RKQARFLVVQMLYQIDLNPDISINEIREMIEEHGRNKTARTFAWELFTGVMEFKQQLDEH 63 Query: 66 MKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + L+ + ++ +LR+ YEL +D P V I+EA+ELA+ FG+ S +FVN Sbjct: 64 IVRVAENWTLKRMAVTDRNILRLGTYELLH-TDTPPAVVIDEAVELAREFGSAHSSQFVN 122 Query: 125 GVLDKAAPV 133 G+LDK Sbjct: 123 GILDKVVQR 131 >UniRef50_A9ET18 N utilization substance protein B homolog n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=NUSB_SORC5 Length = 140 Score = 140 bits (355), Expect = 1e-32, Method: Composition-based stats. Identities = 46/132 (34%), Positives = 73/132 (55%), Gaps = 1/132 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 AR RE A+Q L++ + + V F E Y E++ GVA + A +D Sbjct: 2 GARSTGREAALQMLFAVEAGGSSAPRVVATFWRETPGDPEGRAYADEVVVGVAEDLAAVD 61 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ + LE + +V++ VLR+ +EL R +VP V ++EA+ELAK +G+E+S F Sbjct: 62 EAIRKASTNWRLERMARVDRNVLRLGAWELMNRPEVPRAVILDEAVELAKRYGSEESGAF 121 Query: 123 VNGVLDKAAPVI 134 VNGVLD+ A + Sbjct: 122 VNGVLDRIAENL 133 >UniRef50_C5CI90 NusB antitermination factor n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CI90_KOSOT Length = 148 Score = 140 bits (355), Expect = 1e-32, Method: Composition-based stats. Identities = 41/140 (29%), Positives = 72/140 (51%), Gaps = 3/140 (2%) Query: 3 PAARRRARECAVQALYSWQLSQNDIA--DVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 RR+ RE ++++ + ++ A + + A + + L G+ + Sbjct: 6 TGQRRKIREIVFRSIFQYDFHKDFPAAMEYLERETAFYSLDKESKNRAKGYLMGIIEHLD 65 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D ++ YL + L ++++VLR+A YEL DVP +V +NEAIE+ K +G+++ Sbjct: 66 EIDSIITAYLKNWTFDRLASIDRSVLRLATYELLYVDDVPIEVTLNEAIEITKKYGSQEE 125 Query: 120 HKFVNGVLDKAAPVIRPNKK 139 KFVNGVLDK A +K Sbjct: 126 GKFVNGVLDKIAKERVSEEK 145 >UniRef50_C4FT85 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FT85_9FIRM Length = 457 Score = 140 bits (354), Expect = 1e-32, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 2/128 (1%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 + R A+Q L + + L++ ++K VD L+ G + LD Sbjct: 12 KHNVRFQALQLLVEIDWHDQYSNVLLNRALSQSELKPVDQGLLVNLVYGSIQHRLTLDFY 71 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 ++P++ ++L +++LR+ Y++ +P AINEA+ +AK G VNG Sbjct: 72 LEPFIKG--KKLEPWIRSLLRMTAYQMLYLERIPDHAAINEAVNIAKLNGHAGLAGLVNG 129 Query: 126 VLDKAAPV 133 VL Sbjct: 130 VLRNFRRQ 137 >UniRef50_A5G3J8 N utilization substance protein B homolog n=7 Tax=Desulfuromonadales RepID=NUSB_GEOUR Length = 145 Score = 140 bits (354), Expect = 2e-32, Method: Composition-based stats. Identities = 49/144 (34%), Positives = 77/144 (53%), Gaps = 9/144 (6%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQ--------DVKDVDVLYFRELLAGV 55 ++RR RE A+QALYS + D V + + D + EL+ GV Sbjct: 2 SSRREGRELALQALYSSDVEVMDGTTVLKRIMENFGDGSEPAVDAHSRSFSFAAELVNGV 61 Query: 56 ATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 N A +D ++ + + +V+ +LR+A++EL R D+P V INEAIE+AK F Sbjct: 62 VANRAAIDQRIEEKSKNWSISRMARVDLNILRLAVFELFYRPDIPKNVTINEAIEVAKKF 121 Query: 115 GAEDSHKFVNGVLDKAAPVIRPNK 138 GA+DS F+NG+LD+ A ++ + Sbjct: 122 GADDSPAFINGILDEIASLLPDKE 145 >UniRef50_B1YIQ1 Sun protein n=2 Tax=Exiguobacterium RepID=B1YIQ1_EXIS2 Length = 446 Score = 140 bits (353), Expect = 2e-32, Method: Composition-based stats. Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 1/128 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R+ AV L +Q L ++ + DV + EL+ G + LD +++P+ Sbjct: 4 RDAAVTTLLKIGQGGAFSTISVHQMLEKRAISKADVGLYTELVYGTLSRELTLDYILEPF 63 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 L++ ++L + +LR+++Y+L +P INEA+E+AK+ G K VNGVL Sbjct: 64 LTKQ-KKLDPFMRPLLRMSVYQLFYLDRIPDHAVINEAVEIAKTRGKPHIAKVVNGVLRN 122 Query: 130 AAPVIRPN 137 +P+ Sbjct: 123 VLRTGKPD 130 >UniRef50_UPI0001C42A93 transcription antitermination protein NusB n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42A93 Length = 135 Score = 140 bits (353), Expect = 2e-32, Method: Composition-based stats. Identities = 45/137 (32%), Positives = 76/137 (55%), Gaps = 4/137 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 RR AR A QALY L+ +++ L + + + +F +L+ G +D Sbjct: 1 MNRRLARLRAAQALYQMDLTGSEMESAIESVLEDNEKQS---EFFTQLVQGTTELKTKID 57 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + L + +G V++A++R+A+YE+ + D+P V NEAIELAK+FG E++ +F Sbjct: 58 ETISANLEGWTISRMGHVDRAIIRMAMYEMLEVEDIPVNVTFNEAIELAKAFGGEEAGRF 117 Query: 123 VNGVLDKAAPVIRPNKK 139 VNGVL K+ + ++K Sbjct: 118 VNGVLSKSIETLNLDRK 134 >UniRef50_B2S4Q2 N utilization substance protein B homolog n=3 Tax=Treponema RepID=NUSB_TREPS Length = 141 Score = 140 bits (353), Expect = 2e-32, Method: Composition-based stats. Identities = 44/130 (33%), Positives = 66/130 (50%), Gaps = 3/130 (2%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFL--AEQDVKDVDVLYFRELLAGVATNTAYLD 63 RRRAR A QAL++W + + D+ + R L G + +D Sbjct: 10 RRRARILAFQALFAWDAAGITPETLTQFTWLRRNPPPSTQDLGFSRLLFLGTLEHLREID 69 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 G + L L +V+KA+LR++ Y L + D+P V I+EA+ +A+ FG +DS +F Sbjct: 70 GCVSSRLEHWDFVRLNKVDKAILRLSAYSLLFQKDIPPVVVIHEAVSIARDFGTDDSFRF 129 Query: 123 VNGVLDKAAP 132 VNGVLD A Sbjct: 130 VNGVLDNIAK 139 >UniRef50_B1LAQ8 N utilization substance protein B homolog n=10 Tax=Thermotogaceae RepID=NUSB_THESQ Length = 142 Score = 140 bits (353), Expect = 2e-32, Method: Composition-based stats. Identities = 48/140 (34%), Positives = 76/140 (54%), Gaps = 2/140 (1%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK RRR R +AL+ + +++ + + + ++ R + G+ N Sbjct: 1 MKT-PRRRMRLAVFKALFQHEFRRDEDLEQILEEILDETYDKKAKEDARRYIRGIKENLP 59 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D L+ YL + L L V++ VLR+A YEL D+P +V I+EAIE+AK +G E+S Sbjct: 60 MIDNLISRYLEKWSLNRLSAVDRNVLRLATYELLFEKDIPIEVTIDEAIEIAKRYGTENS 119 Query: 120 HKFVNGVLDKAAPVIRPNKK 139 KFVNG+LD+ A P +K Sbjct: 120 GKFVNGILDRIAKEHAPKEK 139 >UniRef50_B4SCZ7 N utilization substance protein B homolog n=2 Tax=Chlorobium/Pelodictyon group RepID=NUSB_PELPB Length = 171 Score = 140 bits (353), Expect = 2e-32, Method: Composition-based stats. Identities = 46/142 (32%), Positives = 75/142 (52%), Gaps = 4/142 (2%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDV-LYFRELLAGVATNT 59 MK RR+ RE +QALY+ ++ DI L E+ + D + +F LL + + Sbjct: 1 MKTY-RRQIREKILQALYTIEIRDTDIDSAAGWLLTEEILADPNAMKFFNMLLKNIKEHM 59 Query: 60 AYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF-GAE 117 +D + + + + ++K ++R+AL E+ D+P KV+INEAIE+AK F + Sbjct: 60 EEIDRYIVKHTFNWDMSRIAIIDKNIIRMALTEILYCEDIPPKVSINEAIEIAKKFNSTD 119 Query: 118 DSHKFVNGVLDKAAPVIRPNKK 139 S KFVNG+LD ++ K Sbjct: 120 KSSKFVNGILDAIFNDLKNEGK 141 >UniRef50_Q5WF59 N utilization substance protein B homolog n=2 Tax=Bacillus RepID=NUSB_BACSK Length = 133 Score = 139 bits (352), Expect = 2e-32, Method: Composition-based stats. Identities = 43/127 (33%), Positives = 67/127 (52%), Gaps = 4/127 (3%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 RR AR AVQ LY L ++ L +++ ++ L+ G + +D Sbjct: 1 MNRRVARLRAVQTLYQLTLIDINVDKAIENTLNDEEEPS---EFYNTLVHGTLEHQDEID 57 Query: 64 GLMKPYLSR-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 G + L L+ LG V++A+ R+ L+E+ D+P V +NEAIELAK+FG D+ +F Sbjct: 58 GYLSENLKGYTLDRLGHVDRAIARMGLFEMLYLDDIPVNVTLNEAIELAKAFGGTDAGRF 117 Query: 123 VNGVLDK 129 +NGVL Sbjct: 118 INGVLSN 124 >UniRef50_UPI0001C36EDB sun protein n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C36EDB Length = 443 Score = 139 bits (352), Expect = 2e-32, Method: Composition-based stats. Identities = 35/127 (27%), Positives = 53/127 (41%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R AV+ L S + L D+ D + L GV LD ++ Sbjct: 5 RYTAVKLLDKTFRSGSYSNIQLDAGLKNSDLSPQDKRFCTALYYGVIERKITLDHILTGL 64 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 SR L +L + +LR +Y+L +VP A+NE+++LAK FG + VN VL Sbjct: 65 SSRPLSKLDSIIITILRCGIYQLLYMENVPDNAAVNESVKLAKKFGKTSASGMVNAVLRN 124 Query: 130 AAPVIRP 136 + Sbjct: 125 FIRKGKK 131 >UniRef50_C0EFK3 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EFK3_9CLOT Length = 441 Score = 139 bits (351), Expect = 3e-32, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 1/130 (0%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLM 66 R AR+ A+ AL L+ + D + +L GV LD ++ Sbjct: 4 RTARDLALSALLKMDKQGAYSNLAFDGMLSSSSLSPRDRDFAAKLFYGVLETKITLDYII 63 Query: 67 KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGV 126 Y + E++ + +LR+ LY++ D+ A+NE++ L K G + + FVN + Sbjct: 64 ASYATMKPEKISSDVRNILRLGLYQIKYL-DLEDFAAVNESVNLVKLRGKKSASGFVNAI 122 Query: 127 LDKAAPVIRP 136 L + Sbjct: 123 LRAFLRDGKN 132 >UniRef50_Q5F9Y0 N utilization substance protein B homolog n=22 Tax=Neisseria RepID=NUSB_NEIG1 Length = 141 Score = 139 bits (351), Expect = 3e-32, Method: Composition-based stats. Identities = 59/138 (42%), Positives = 80/138 (57%), Gaps = 1/138 (0%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK A RRR+RE AVQA+Y +++ ++ D D F +L G TN A Sbjct: 1 MKTA-RRRSRELAVQAVYQSLINRTAAPEIAKNIREMSDFAKADEELFNKLFFGTQTNAA 59 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 ++P L R ++L +E+AVL A +ELS + PY V INEAIE+ K+FG D H Sbjct: 60 DYIQKIRPLLDRDEKDLNPIERAVLLTACHELSAMPETPYPVIINEAIEVTKTFGGTDGH 119 Query: 121 KFVNGVLDKAAPVIRPNK 138 KFVNG+LDK A IRP++ Sbjct: 120 KFVNGILDKLAAQIRPDE 137 >UniRef50_D1VSJ6 Transcription antitermination factor NusB n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSJ6_9FIRM Length = 139 Score = 139 bits (351), Expect = 3e-32, Method: Composition-based stats. Identities = 40/133 (30%), Positives = 75/133 (56%), Gaps = 1/133 (0%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R+ AR A+Q LYS +L+++ + +F D + + Y +++ + N +D + Sbjct: 3 RKNARVGAMQLLYSMELNKDFSQENIEKFFENYDFSESEQSYINSVISELVNNLDSVDKV 62 Query: 66 MKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + L + L V++ +LR+A++E R D+P +V+INEA+E+AK + +E+S KFVN Sbjct: 63 LSDNLQGWTIPRLATVDREILRVAIFEFLYRKDIPVEVSINEAVEIAKKYSSEESPKFVN 122 Query: 125 GVLDKAAPVIRPN 137 G+L ++ Sbjct: 123 GILASILKNLKDE 135 >UniRef50_A6NUS8 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NUS8_9BACE Length = 447 Score = 139 bits (351), Expect = 3e-32, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 1/134 (0%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 P+ + ARE A+ AL + + + L E + D L GV N L Sbjct: 2 PSTDQTARETALLALSACERQGAWSDGFLKKTLREAGLDSRDAALATRLCFGVLQNRLLL 61 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG-AEDSHK 121 D + + + E++ + LR+ +Y+++ + +P+ A+NE++EL K + Sbjct: 62 DFYIGKFSTTRPEKMEIKVRNALRLGVYQMAFMTKIPHNAAVNESVELTKKHCKNPRAAG 121 Query: 122 FVNGVLDKAAPVIR 135 VNGVL + I Sbjct: 122 MVNGVLRNVSRNID 135 >UniRef50_Q136T4 N utilization substance protein B homolog n=36 Tax=Alphaproteobacteria RepID=NUSB_RHOPS Length = 174 Score = 138 bits (350), Expect = 4e-32, Method: Composition-based stats. Identities = 44/148 (29%), Positives = 73/148 (49%), Gaps = 11/148 (7%) Query: 2 KPAARR-RARECAVQALYSWQLSQNDIADVEYQF--------LAEQDVKDVDVLYFRELL 52 + A RR AR AVQALY + I D +F + + +FR+++ Sbjct: 24 RKANRRGAARLAAVQALYQMDIGGAGIDDTFAEFESHWIGNEVEGDQYLPAEAAFFRDIV 83 Query: 53 AGVATNTAYLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIEL 110 +GV + LD L+ L+ L + + +AV+R YEL R D+P +V ++E +++ Sbjct: 84 SGVVRDQTKLDPLIDEALAKGWPLARIDAIIRAVMRAGAYELEHRKDIPARVVVSEYVDV 143 Query: 111 AKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 A +F +D VN VLD+ A R ++ Sbjct: 144 AHAFVEKDETGMVNAVLDQIARQFRADE 171 >UniRef50_UPI0001745093 NusB antitermination factor n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001745093 Length = 145 Score = 138 bits (350), Expect = 4e-32, Method: Composition-based stats. Identities = 43/135 (31%), Positives = 66/135 (48%), Gaps = 2/135 (1%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 M RR R+ A+Q L++ + F + L+ G+ T+ Sbjct: 1 MAIGKRREGRQAAMQFLFAHDVHGKVEDTDRAAFWTLHSATQDIRAHAESLVTGIKTHQV 60 Query: 61 YLDGLMKPYLSR-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D + L E LG V++ +LR+A+YE+ ++VP V INEA+E++K FG + Sbjct: 61 QIDDCIAATLENFRFERLGVVDRNILRLAVYEMLH-TEVPVPVVINEAVEISKVFGDTQT 119 Query: 120 HKFVNGVLDKAAPVI 134 FVNGVLDK A I Sbjct: 120 RAFVNGVLDKIAKRI 134 >UniRef50_B1W456 N utilization substance protein B homolog n=7 Tax=Streptomyces RepID=NUSB_STRGG Length = 143 Score = 138 bits (350), Expect = 4e-32, Method: Composition-based stats. Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 5/140 (3%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDV---LYFRELLAGVATNTA 60 AAR +AR+ A Q L+ + V ++ D + EL+ G A Sbjct: 2 AARNKARKRAFQILFEADQRGESVQSVLADWVRLSRTDDRQPPVGEFTMELVEGYAQYAD 61 Query: 61 YLDGLMKPY-LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D L+ Y + ++ + V++++LR+ YEL P V I+EA++LAK F +DS Sbjct: 62 RIDDLIVTYAVDWEIDRMPVVDRSILRLGAYELIWMDGTPDAVVIDEAVQLAKEFSTDDS 121 Query: 120 HKFVNGVLDKAAPVIRPNKK 139 FVNG+L + ++PN + Sbjct: 122 PSFVNGLLARF-KDLKPNLR 140 >UniRef50_B4D6X5 NusB antitermination factor n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6X5_9BACT Length = 151 Score = 138 bits (350), Expect = 4e-32, Method: Composition-based stats. Identities = 48/137 (35%), Positives = 70/137 (51%), Gaps = 6/137 (4%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQ-----DVKDVDVLYFRELLAGVATN 58 RR RE AVQ LY LS + E ++ V ++ +L GV + Sbjct: 2 GKRREGREAAVQYLYQIDLSGETPVNAEQFWMLRSGPGKAPVAPKTRIFAEQLALGVRKH 61 Query: 59 TAYLDGLMKPYLSR-LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 +DG +K Y + L+ L V++ +LR+A+YEL DV + INEAIE+AK FG + Sbjct: 62 LEEIDGYIKKYTANYELDRLAVVDRNILRVAIYELLHSPDVAPVIIINEAIEVAKKFGTD 121 Query: 118 DSHKFVNGVLDKAAPVI 134 S FVNG+LD+ + Sbjct: 122 KSGGFVNGILDRIKEEV 138 >UniRef50_A0Q113 Sun protein n=35 Tax=Clostridium RepID=A0Q113_CLONN Length = 443 Score = 138 bits (349), Expect = 5e-32, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 56/129 (43%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 +AR+ V L V Q L + + D D E++ G +D ++ Sbjct: 3 KARKICVDILEVVFNKNAYSNIVLRQTLNKNKIDDKDKGLITEIVYGTIKYKYTIDTILN 62 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 +L + ++ L +LRI +Y++ +P A+NEA+E+AK + + K VNGVL Sbjct: 63 NFLKKGIKSLDSYVLNILRITVYQIKFLDKIPNFAAVNEAVEIAKKEKSVGASKLVNGVL 122 Query: 128 DKAAPVIRP 136 + Sbjct: 123 RNYLRNLDK 131 >UniRef50_C7N4M1 Transcription antitermination factor NusB n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N4M1_SLAHD Length = 183 Score = 138 bits (349), Expect = 5e-32, Method: Composition-based stats. Identities = 43/137 (31%), Positives = 74/137 (54%), Gaps = 3/137 (2%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 K R R A+Q LY + + V + + ++ D Y R LL GVA++ Sbjct: 3 KRYDRTLGRRAALQVLYESDILGTPVDKVVDEGVVPEEAALND--YARRLLLGVASHITD 60 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D + ++ + V++A+LRI ++E+ +VP V+INEA+ELAK FG +D++ Sbjct: 61 IDRQISKSSKNWAIDRMPLVDRALLRITVFEMQHVDEVPVAVSINEAVELAKDFGGDDTY 120 Query: 121 KFVNGVLDKAAPVIRPN 137 +FVNG+L + A + + Sbjct: 121 RFVNGILGRIARTMGED 137 >UniRef50_C6CU26 NusB antitermination factor n=3 Tax=Bacillales RepID=C6CU26_PAESJ Length = 153 Score = 138 bits (349), Expect = 5e-32, Method: Composition-based stats. Identities = 57/148 (38%), Positives = 83/148 (56%), Gaps = 14/148 (9%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVL----------YFRE 50 MK RR ARE AV +LY ++++ + + E ++ Y RE Sbjct: 1 MK---RRLAREIAVSSLYQLEMNEVTPMEAVDMLMEEARSENEIEAEFVENDQTDNYVRE 57 Query: 51 LLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIE 109 L+ GVA N A +D ++ YL+ ++ L +V++ +LR+A +E++ R+DVP K AINEAIE Sbjct: 58 LVNGVAENKAAIDERLQHYLTGWQVDRLSRVDRQILRLAYFEIAYRNDVPPKAAINEAIE 117 Query: 110 LAKSFGAEDSHKFVNGVLDKAAPVIRPN 137 LAK FG E+S KFVNGVL K Sbjct: 118 LAKHFGTEESGKFVNGVLGKLLKEREGE 145 >UniRef50_Q6AP93 N utilization substance protein B homolog n=1 Tax=Desulfotalea psychrophila RepID=NUSB_DESPS Length = 141 Score = 138 bits (349), Expect = 6e-32, Method: Composition-based stats. Identities = 45/134 (33%), Positives = 67/134 (50%), Gaps = 7/134 (5%) Query: 4 AARRRARECAVQALYSWQLSQNDIA------DVEYQFLAEQDVKDVDVLYFRELLAGVAT 57 + RR ARE A+Q LY + QF V Y L+AGV Sbjct: 2 SIRRFAREAALQFLYQDDFIPESADTPGELKERFEQFCEIYQVNKKGRTYALNLIAGVLA 61 Query: 58 NTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 + +D L++ + + ++ +LR+A +E++ DVP +VAINEA+E+AK F Sbjct: 62 DQEAIDRLIEEAAVNWRMSRISATDRNLLRVATFEINFCDDVPAEVAINEAVEIAKRFCG 121 Query: 117 EDSHKFVNGVLDKA 130 ++S KFVNGVLD Sbjct: 122 DESPKFVNGVLDAV 135 >UniRef50_B8DJF1 N utilization substance protein B homolog n=2 Tax=Desulfovibrio RepID=NUSB_DESVM Length = 165 Score = 138 bits (348), Expect = 6e-32, Method: Composition-based stats. Identities = 50/154 (32%), Positives = 71/154 (46%), Gaps = 17/154 (11%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQ--------DVKDVDV-------- 45 K RR R A Q LY + A + + D Sbjct: 6 KKPTRRSERALAFQVLYGLSFTPATSEGALRAAYAASPDVADRNAEDEKADRQAPATAPQ 65 Query: 46 LYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAI 104 Y E++ GV A LD + + +E +G+VE +LRIA+YE+ R DVP KVA+ Sbjct: 66 GYAWEVIHGVWKTQAELDEAVSGFSQNWRVERMGRVELTLLRIAVYEMLFRDDVPAKVAM 125 Query: 105 NEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 NEAIEL+K FG ++S F+NG+LD A + + Sbjct: 126 NEAIELSKQFGDDNSRGFINGILDAVARAVESGR 159 >UniRef50_B6WQ80 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WQ80_9DELT Length = 157 Score = 138 bits (348), Expect = 6e-32, Method: Composition-based stats. Identities = 51/143 (35%), Positives = 77/143 (53%), Gaps = 7/143 (4%) Query: 2 KPAARRRARECAVQALYSWQLSQN-DIADVEYQFLAEQDVKDVDVL-----YFRELLAGV 55 K A+RR R A Q LY + + DV FL D ++ + + +L+ GV Sbjct: 5 KSASRRGERAQAFQVLYGLSFADATSLEDVRRAFLQSPDHQESEEGELPSGFSWDLVQGV 64 Query: 56 ATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 + LD + + ++ +G+VE +LR+A+YEL R DVP KVAINEA+EL + F Sbjct: 65 WSRRDELDKTISRFSRNWRVDRMGRVELTLLRLAMYELLYRQDVPAKVAINEALELTRQF 124 Query: 115 GAEDSHKFVNGVLDKAAPVIRPN 137 G +++ FVNG+LD AA + Sbjct: 125 GEDNATSFVNGILDAAAKALEKG 147 >UniRef50_C8PMR7 Transcription antitermination factor NusB n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PMR7_9SPIO Length = 147 Score = 138 bits (348), Expect = 6e-32, Method: Composition-based stats. Identities = 45/132 (34%), Positives = 66/132 (50%), Gaps = 4/132 (3%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAE---QDVKDVDVLYFRELLAGVATNTAYL 62 RRR R A QALY+W D+ E +++ D D L+ + L G + + Sbjct: 5 RRRGRILAFQALYAWDAGSLSPDDLLPFPWVERTGKELHDEDFLFSQLLFLGAVEHIDEI 64 Query: 63 DGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 DGL+ L L V+KA+LR+ Y L + D ++ INEA+ +A+ +G +DS K Sbjct: 65 DGLIAKNLENWDFNRLKLVDKAILRLGTYSLLFQQDTDPRIVINEAVTIARIYGTDDSFK 124 Query: 122 FVNGVLDKAAPV 133 FVN VLD Sbjct: 125 FVNAVLDSIKRE 136 >UniRef50_B0K9D9 N utilization substance protein B homolog n=10 Tax=Thermoanaerobacterales RepID=NUSB_THEP3 Length = 140 Score = 138 bits (348), Expect = 7e-32, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 67/136 (49%), Gaps = 3/136 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 R ARE V+ LY + +S+ I+ + F E+D Y + G + +D Sbjct: 1 MNRTEAREWVVKMLYQYDVSRLPISKILENFYKEKD-PGEQKEYIENTVIGAIEHLEEID 59 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ Y L + +++ A+LR ++YE+ ++P ++INEA+E+AK + EDS F Sbjct: 60 KEIERYSQNWALNRMPKIDLAILRCSIYEMQY-GNIPVNISINEAVEIAKKYSTEDSPAF 118 Query: 123 VNGVLDKAAPVIRPNK 138 +NG+L + Sbjct: 119 INGLLGAFVRDEGLEE 134 >UniRef50_B1HQE5 Ribosomal RNA small subunit methyltransferase B n=5 Tax=Bacillaceae RepID=B1HQE5_LYSSC Length = 453 Score = 138 bits (348), Expect = 7e-32, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 55/124 (44%), Gaps = 3/124 (2%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R+ A+ L + +Q + + + ++ D EL G + LD ++P+ Sbjct: 14 RDAALSILLAVDKNQAYSNLLLNETIKRHKIEAKDRALLTELTYGTLQHKMTLDYYLEPF 73 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 + + + +LRI+LY++ + +P A+NEA+E+AK G VNG+L Sbjct: 74 IRGS---IDHWVRWLLRISLYQMQYLTRIPAHAAVNEAVEIAKRRGHRGIASTVNGILRS 130 Query: 130 AAPV 133 Sbjct: 131 VLRQ 134 >UniRef50_B2KE32 N utilization substance protein B homolog n=1 Tax=Elusimicrobium minutum Pei191 RepID=NUSB_ELUMP Length = 140 Score = 138 bits (348), Expect = 7e-32, Method: Composition-based stats. Identities = 43/139 (30%), Positives = 70/139 (50%), Gaps = 4/139 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADV-EYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 RR ARE A+Q LY + D+ EY+ + + + ++ G + A L Sbjct: 2 GNRRLAREHALQTLYYADTGKTQGKDINEYKEDFKDSLDAAGFEFCSGIIDGALEHQAEL 61 Query: 63 DGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSD-VPYKVAINEAIELAKSFGAEDSH 120 D ++ Y L + V++++LR+A YE+ + P I+EAIELAK F E+S Sbjct: 62 DKIISAYAKNWSLNRMSVVDRSILRMAAYEMLFSPENTPVAAVIDEAIELAKKFSTENSS 121 Query: 121 KFVNGVLDKAAPVIRPNKK 139 +F+NG+LD+ R N + Sbjct: 122 RFINGLLDQIKKE-RKNGQ 139 >UniRef50_A0LEK0 Sun protein n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LEK0_SYNFM Length = 449 Score = 137 bits (347), Expect = 8e-32, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 1/126 (0%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFL-AEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 AR A Q L + + L + +++ D EL+ GV LD + Sbjct: 4 ARVLAFQILLHMDRDASHPDRLIRGMLGRHERLEERDRALLTELVYGVLRWQGRLDWHID 63 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 E++ + +LR+ALY++ +P A+NEA+ +AK+ KFVNGVL Sbjct: 64 QLSRTRPEKIDPAVRILLRLALYQILMLDRIPDHAAVNEAVNMAKTTQPAYLVKFVNGVL 123 Query: 128 DKAAPV 133 +A Sbjct: 124 REALRR 129 >UniRef50_C9RZP8 Sun protein n=5 Tax=Bacillales RepID=C9RZP8_GEOSY Length = 444 Score = 137 bits (347), Expect = 9e-32, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 1/127 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 RE A+ L + + + + + + D E++ G LD + P+ Sbjct: 4 RELALDTLLAIEQKGAYSHLQLNEAIQKGRLDGRDAALLTEIVYGTVQRRDTLDYYLAPF 63 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 L R L + +LR+ LY++ VP + A+ EA+E+AK G VNGVL Sbjct: 64 L-RKARRLEPWVRVLLRLTLYQMVYLDRVPDRAAVFEAVEIAKRRGHRGIASLVNGVLRA 122 Query: 130 AAPVIRP 136 P Sbjct: 123 IGREGLP 129 >UniRef50_C5S6Y6 NusB antitermination factor n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S6Y6_CHRVI Length = 171 Score = 137 bits (347), Expect = 9e-32, Method: Composition-based stats. Identities = 49/153 (32%), Positives = 76/153 (49%), Gaps = 22/153 (14%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQ-----------------DVKDVDV 45 + R ++R A ALY W+L+ +D ++ L + ++ D Sbjct: 10 ISPRSQSRRYAALALYQWRLTGDDPMAIKRHLLDDPKWLDAVAASLNGVSDEDELAAEDR 69 Query: 46 -----LYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPY 100 ELL GV T+ +D + +L R + ++ VE A+LR+ YE+ ++P Sbjct: 70 FNFNVELLDELLNGVPTHIDAIDAQLDRFLDRPISQVDPVELAILRLGAYEILFSDNIPD 129 Query: 101 KVAINEAIELAKSFGAEDSHKFVNGVLDKAAPV 133 +VAINEA+EL K GA + HK+VNGVLDK A Sbjct: 130 RVAINEAVELTKLLGAHEGHKYVNGVLDKIARR 162 >UniRef50_Q5P3H4 N utilization substance protein B homolog n=9 Tax=Betaproteobacteria RepID=NUSB_AZOSE Length = 145 Score = 137 bits (347), Expect = 9e-32, Method: Composition-based stats. Identities = 54/128 (42%), Positives = 70/128 (54%) Query: 11 ECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL 70 E A+Q +Y W LS N + +E D F LL G N L P++ Sbjct: 12 EFALQGIYQWLLSANSMLLIEEHVSQVSGFDKADRELFISLLRGTLNNVDDLQAEFAPFI 71 Query: 71 SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130 R + EL VE+A+L +A +EL D PY+V INEAIELAKS+G D H+FVNGVLDK Sbjct: 72 HRAVHELSPVERAILLLATHELKHNLDTPYRVIINEAIELAKSYGGTDGHRFVNGVLDKL 131 Query: 131 APVIRPNK 138 A +R + Sbjct: 132 ATQLRVTE 139 >UniRef50_C0WD86 SUN protein n=1 Tax=Acidaminococcus sp. D21 RepID=C0WD86_9FIRM Length = 445 Score = 137 bits (346), Expect = 1e-31, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 52/123 (42%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 RE A+ L + L + +D EL+ G T LD + Sbjct: 8 RELALLVLDEIYERGAYANLALNKALRGNGLSSLDRKLCTELVYGTVKTTGTLDWYLCRV 67 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 ++R ++ + +LR+ Y++ +P A+NE LA+ + E+S K VNGVL + Sbjct: 68 INRPFRKMAPRLRTILRMGAYQILYLERIPDSAAVNECANLARYYVNENSVKLVNGVLRQ 127 Query: 130 AAP 132 + Sbjct: 128 LSR 130 >UniRef50_A7HDY2 N utilization substance protein B homolog n=4 Tax=Anaeromyxobacter RepID=NUSB_ANADF Length = 143 Score = 137 bits (346), Expect = 1e-31, Method: Composition-based stats. Identities = 55/137 (40%), Positives = 81/137 (59%), Gaps = 3/137 (2%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDV-LYFRELLAGVATNTAYLD 63 R RARE A+QALY ++ I D +F + + +V + GVA + +D Sbjct: 4 KRTRARERALQALYQIDVAAEGIDDALSRFWKSFEPVEREVMEDAEGFVRGVAAHRRTID 63 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ + L+ + +V++ VLR+A+YEL R+DVP KVAINEAIEL K +G+E S F Sbjct: 64 DTIEGVSTNWRLDRMAKVDRNVLRLAVYELL-RTDVPVKVAINEAIELGKKYGSESSGAF 122 Query: 123 VNGVLDKAAPVIRPNKK 139 VNGVLDK A + P ++ Sbjct: 123 VNGVLDKVAAGLPPERR 139 >UniRef50_Q3ATI5 N utilization substance protein B homolog n=9 Tax=Chlorobiaceae RepID=NUSB_CHLCH Length = 169 Score = 137 bits (346), Expect = 1e-31, Method: Composition-based stats. Identities = 45/142 (31%), Positives = 75/142 (52%), Gaps = 4/142 (2%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDV-LYFRELLAGVATNT 59 MK RR+ RE +QALY+ +L + + L E+ + D + +F LL+ + + Sbjct: 1 MKTY-RRQIREKILQALYTVELRGITLDEAAGWLLTEEILADPNAMKFFNLLLSSIKAHR 59 Query: 60 AYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF-GAE 117 +D + + + ++K ++R+AL E+ D+P KV+INEAIE+AK F + Sbjct: 60 EEIDNYIAQQTFNWDMSRIAIIDKNIIRMALTEILYCEDIPPKVSINEAIEIAKKFNSTD 119 Query: 118 DSHKFVNGVLDKAAPVIRPNKK 139 S KFVNG+LD ++ K Sbjct: 120 KSSKFVNGILDAIFNKLKTEGK 141 >UniRef50_B9L730 Transcription antitermination factor NusB n=2 Tax=Nautiliaceae RepID=B9L730_NAUPA Length = 136 Score = 137 bits (345), Expect = 1e-31, Method: Composition-based stats. Identities = 40/133 (30%), Positives = 78/133 (58%), Gaps = 2/133 (1%) Query: 7 RRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLM 66 ARE +Q LY+ ++ + + + L ++ VK + ++LL GV+ + +D ++ Sbjct: 5 THAREAVIQTLYAQEMGNDQAIEQFDEILKDKKVKGSKAEFAKKLLKGVSEHIDKIDEII 64 Query: 67 KPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 K +L E L +V+K +LR+ +YE+ +D PY++ I+EA+++AK+F + + F+NG Sbjct: 65 KNHLIDWDFERLDKVDKQILRVGIYEILY-TDTPYQIVIDEAVKIAKNFSEDKAKSFING 123 Query: 126 VLDKAAPVIRPNK 138 +LD+ A N+ Sbjct: 124 ILDRVAKEKMSNE 136 >UniRef50_Q6MNX9 N utilization substance protein B homolog n=1 Tax=Bdellovibrio bacteriovorus RepID=NUSB_BDEBA Length = 135 Score = 137 bits (345), Expect = 1e-31, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 71/134 (52%), Gaps = 3/134 (2%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK ARR+ARE A+Q L+ + + + + + + Y ++ GV +N Sbjct: 1 MKLTARRQARELALQVLFQTEFAPQISYQTFLEVFEQS-LDPEVITYADLIVTGVKSNKE 59 Query: 61 YLDGLM-KPYLSRLLEELGQVEKAVLRIALYELSKRSD-VPYKVAINEAIELAKSFGAED 118 +D + +E + +++ +LRIA+YE+ +D + +AINEA+E+AK +G D Sbjct: 60 AIDSKIQASSAHWKVERMATIDRNILRIAVYEMRFAADPIKENIAINEAVEIAKKYGTSD 119 Query: 119 SHKFVNGVLDKAAP 132 S FVNG+LD+ Sbjct: 120 SGSFVNGLLDQVGK 133 >UniRef50_P72943 Ribosomal RNA small subunit methyltransferase B n=4 Tax=Chroococcales RepID=RSMB_SYNY3 Length = 446 Score = 137 bits (345), Expect = 1e-31, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 55/130 (42%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR+ A L + + L + + D + EL+ GV LD L++ Sbjct: 4 ARQLAFLILRDINRRDSYTDVAIDRALQKHPLSPPDRRFCTELVYGVVRRQRTLDCLIEQ 63 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 R + + + ++++ LY+L VP A+N ++LAK+ G + K VNG+L Sbjct: 64 LGDRPIGKQPPDLRRIVQLGLYQLRYLDQVPASAAVNTGVDLAKANGLKGLSKVVNGMLR 123 Query: 129 KAAPVIRPNK 138 + K Sbjct: 124 RYQRAEEQGK 133 >UniRef50_B3QJK9 N utilization substance protein B homolog n=9 Tax=Alphaproteobacteria RepID=NUSB_RHOPT Length = 174 Score = 136 bits (344), Expect = 2e-31, Method: Composition-based stats. Identities = 42/147 (28%), Positives = 70/147 (47%), Gaps = 10/147 (6%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQF--------LAEQDVKDVDVLYFRELLA 53 K R AR AVQALY + I + +F + + + +FR+++A Sbjct: 24 KANRRGAARLAAVQALYQMDIGGAGINETFAEFESFWIGNEVEGEQYLPAEAAFFRDIVA 83 Query: 54 GVATNTAYLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELA 111 GV +D L+ L+ L + + +AV+R YEL R D+P +V ++E +++A Sbjct: 84 GVVREQKQIDPLIDDLLARGWPLARIDAILRAVMRAGAYELEHRKDIPARVVVSEYVDVA 143 Query: 112 KSFGAEDSHKFVNGVLDKAAPVIRPNK 138 +F +D VN VLD+ A R + Sbjct: 144 HAFVEKDETGMVNAVLDQIARRFRAEE 170 >UniRef50_A1WVG0 N utilization substance protein B homolog n=1 Tax=Halorhodospira halophila SL1 RepID=NUSB_HALHL Length = 155 Score = 136 bits (344), Expect = 2e-31, Method: Composition-based stats. Identities = 60/136 (44%), Positives = 89/136 (65%), Gaps = 3/136 (2%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R RAR VQALY + ++ D+E QFLA + D+DV YFREL+ GV A LD Sbjct: 10 RSRARSKLVQALYQYAVTGASAEDIERQFLA-AGLGDIDVAYFRELIYGVTDRAAELDEQ 68 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 + L R L +L VE+++LR+ +ELS+R +VPY+V I+E++ELA+ FGA+ SH+++NG Sbjct: 69 LSALLDRPLVQLDPVERSILRLGAFELSERLEVPYRVVIDESVELARRFGADQSHRYING 128 Query: 126 VLDKAAP--VIRPNKK 139 VLD+ +R ++ Sbjct: 129 VLDRFGATVALRAAER 144 >UniRef50_B7IXH3 N utilization substance protein B homolog n=82 Tax=Bacillales RepID=NUSB_BACC2 Length = 130 Score = 136 bits (344), Expect = 2e-31, Method: Composition-based stats. Identities = 44/129 (34%), Positives = 72/129 (55%), Gaps = 5/129 (3%) Query: 4 AARRRARECAVQALYSWQLSQN-DIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 RR ARE A+QALY ++ + L E + + + L+ G N + Sbjct: 1 MKRRTARERAMQALYQMDITGELEPKVAVENTLDEGEETN---EFLESLVVGFVENKEAI 57 Query: 63 DGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D ++ L + LE + V++++LR+A+YE+ ++P+ V INEAIE+AK+FG E+S + Sbjct: 58 DEAIRQNLKKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIEIAKTFGDEESRR 117 Query: 122 FVNGVLDKA 130 F+NGVL Sbjct: 118 FINGVLSNI 126 >UniRef50_D1U9R7 NusB antitermination factor n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U9R7_9DELT Length = 151 Score = 136 bits (343), Expect = 2e-31, Method: Composition-based stats. Identities = 48/143 (33%), Positives = 72/143 (50%), Gaps = 7/143 (4%) Query: 2 KPAARRRARECAVQALYSWQL----SQNDIADVEYQF-LAEQDVKDVDVLYFRELLAGVA 56 +P RR R A Q LY + DI + + E+ + + R L+ GV Sbjct: 9 RPGIRRVGRTLAFQVLYGTHFDDPKNPVDIGTAFERNPMVEEQESETAREFARALVLGVD 68 Query: 57 TNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG 115 N A +D + + + + +E ++LR++LYE+ +D+P K AINEAIEL+K FG Sbjct: 69 KNLARIDAAIGEHSQHWKFDRIAVIELSILRLSLYEMLF-TDIPVKAAINEAIELSKLFG 127 Query: 116 AEDSHKFVNGVLDKAAPVIRPNK 138 E S FVNG+LD A + K Sbjct: 128 DEKSRGFVNGILDGVARTMPSGK 150 >UniRef50_D0MK26 NusB antitermination factor n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MK26_RHOM4 Length = 165 Score = 136 bits (343), Expect = 3e-31, Method: Composition-based stats. Identities = 42/138 (30%), Positives = 70/138 (50%), Gaps = 2/138 (1%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDV-LYFRELLAGVATNTAYL 62 +RR RE +QALY++++ + V L D + + +L + Sbjct: 2 HSRREVRERVLQALYAYEVGHDTAEHVIDTVLRPALKDDREALRFATQLFLRTINYSEEA 61 Query: 63 DGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D L+ ++ L + +++ +LR+A+ EL D+P KV+INEAIELAK + E S + Sbjct: 62 DRLIADHVKNWDLTRIALIDRLLLRMAICELLAFEDIPPKVSINEAIELAKKYSTEKSGQ 121 Query: 122 FVNGVLDKAAPVIRPNKK 139 FVNGVLD ++ + Sbjct: 122 FVNGVLDAVVLDLQRQGR 139 >UniRef50_B9M341 Sun protein n=4 Tax=Geobacter RepID=B9M341_GEOSF Length = 448 Score = 135 bits (342), Expect = 3e-31, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 1/124 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R A + L ++ + + L+ ++ D EL+ GV A LD +++ + Sbjct: 7 RSAAFEILLRIDKERSYADILIDRELSAGALQGPDRGLLTELVYGVLRRQATLDHIIRRF 66 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 S+ LE L + +LRI LY++ VP A+NE ++LAK + F+N VL Sbjct: 67 SSQRLERLERSVLLLLRIGLYQMFYLDRVPVSAAVNETVKLAKVLV-PRASGFINAVLRN 125 Query: 130 AAPV 133 A Sbjct: 126 ADRE 129 >UniRef50_C5EIZ3 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=C5EIZ3_9FIRM Length = 447 Score = 135 bits (342), Expect = 3e-31, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 49/125 (39%), Gaps = 1/125 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNTAYLDGLMKP 68 R + L + + V Q L + + D + + G +D ++ Sbjct: 13 RGIVLDILSEVLDKGSFVHLVLNQALQKYQYLDKSDRAFITRVTEGTLEYLLQIDHIINK 72 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 Y +++ + + +LR+++Y++ VP NEA++LA FVNGVL Sbjct: 73 YSRTKTDKMKPLIRNLLRMSVYQILYMDRVPDSAVCNEAVKLAVKRRFTGLKGFVNGVLR 132 Query: 129 KAAPV 133 + Sbjct: 133 TISRE 137 >UniRef50_A8RWU3 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=A8RWU3_9CLOT Length = 455 Score = 135 bits (342), Expect = 3e-31, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 49/128 (38%), Gaps = 1/128 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNTAYLDGLMKP 68 RE + L + V Q L + + D + + G +D ++ Sbjct: 12 REIVLDILTEVLEQGAFVHLVLNQALQKYQYLGKADRSFITRAVEGTLEYLIQIDEVINR 71 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 Y + ++ +++LR+++Y++ VP NEA+++A FVNGVL Sbjct: 72 YSKTKINKMKPFIRSLLRMSVYQILYMDRVPDSAVCNEAVKMAVKRHFSGLKGFVNGVLR 131 Query: 129 KAAPVIRP 136 + Sbjct: 132 TISREKEN 139 >UniRef50_C6PE58 NusB/RsmB/TIM44 protein n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PE58_CLOTS Length = 199 Score = 135 bits (342), Expect = 3e-31, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 57/124 (45%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R A + LY + + V ++L ++DV+ + +E++ G LD ++ Sbjct: 4 RNIAFKILYEILVKKGYSNIVLNKYLNNDGIEDVEKSFIKEIVFGTIERKYTLDRIIDYC 63 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 ++ ++++ +L + L++L VP AINE++ L K + + KFVN VL Sbjct: 64 STKDIKKIDNKVLIILEMGLFQLMYMDKVPDYAAINESVNLTKEHVGKYASKFVNAVLRS 123 Query: 130 AAPV 133 Sbjct: 124 YLRN 127 >UniRef50_D0BMY2 Ribosomal RNA small subunit methyltransferase B n=2 Tax=Granulicatella RepID=D0BMY2_9LACT Length = 441 Score = 135 bits (342), Expect = 3e-31, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 2/133 (1%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 + R V L + Q+ + + +Q D EL G +D + Sbjct: 3 KVRNAVVDLLVQVEQDQSYSTISLKKVIEQQKWTAKDKGLLTELFYGTIQRKMTIDFYLA 62 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 PY+ + +++ K +LRI++Y++ +P AI EA+++AK G + KFVNGVL Sbjct: 63 PYIQKA-KKIQPWVKQLLRISIYQMVFLDKIPDHAAIFEAVQIAKKRGHQGIAKFVNGVL 121 Query: 128 DKAAP-VIRPNKK 139 +R ++ Sbjct: 122 RNFQRNDLRSFEE 134 >UniRef50_Q1NRI6 NusB antitermination factor n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NRI6_9DELT Length = 135 Score = 135 bits (342), Expect = 4e-31, Method: Composition-based stats. Identities = 47/131 (35%), Positives = 74/131 (56%), Gaps = 1/131 (0%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 M RR+ARE A+QALY ++ D + + Y RELLAG+ + Sbjct: 1 MAVGTRRKARELALQALYQGEMLGVGALDTLPSLCENFEASRRALPYARELLAGIEAHGE 60 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D + + L+ + +++ ++RIA+YE+ R +VP VAI+EA+ELAK +GA+DS Sbjct: 61 AIDAAIDAAAANWRLDRMSYIDRNLMRIAVYEMRWRDEVPAGVAIDEAVELAKRYGADDS 120 Query: 120 HKFVNGVLDKA 130 F+NG+LD Sbjct: 121 PAFINGILDAV 131 >UniRef50_C8WW78 Sun protein n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WW78_ALIAD Length = 451 Score = 135 bits (341), Expect = 4e-31, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 1/131 (0%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 R A QAL + + + LA V + D E+ G LD L+ Sbjct: 4 EGRRRAYQALIRVERDGAFLNAALQEALAGAGVDERDRALATEIAYGTLRRQITLDRLLS 63 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 P + R + +L + +LR+ Y+++ + VP A N+A+ELAK + VN VL Sbjct: 64 PLVRRPMSKLDPEVRVILRMGAYQMTWLNRVPAYAAANDAVELAKRHR-PQAAALVNAVL 122 Query: 128 DKAAPVIRPNK 138 + A + + Sbjct: 123 RRYAERAQDWE 133 >UniRef50_Q1MS16 N utilization substance protein B homolog n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=NUSB_LAWIP Length = 161 Score = 135 bits (341), Expect = 4e-31, Method: Composition-based stats. Identities = 46/150 (30%), Positives = 71/150 (47%), Gaps = 13/150 (8%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDV------------LYFR 49 K +RR R A Q LYS +Q + + + + + Sbjct: 5 KKHSRRIDRTKAFQVLYSLHFTQINTIETLKEIFLNLPNPLEERNTGIITELDTQISFSW 64 Query: 50 ELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAI 108 +L+ GV N LD ++ + ++ LG++E +LRIA +E+ DVP KV++NEA+ Sbjct: 65 QLVEGVWRNVTRLDKIISQFSQNWRVDRLGKIELTLLRIATFEMYYCPDVPPKVSLNEAL 124 Query: 109 ELAKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 ELA FG E + KF+NG+LD I K Sbjct: 125 ELATCFGDEKARKFINGILDAIIKAIETEK 154 >UniRef50_C0ZC03 N utilization substance protein B n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZC03_BREBN Length = 137 Score = 135 bits (341), Expect = 4e-31, Method: Composition-based stats. Identities = 50/133 (37%), Positives = 71/133 (53%), Gaps = 4/133 (3%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 M RR ARE VQ L+ +++ + D + E + + Y R LL GV N Sbjct: 1 MNGMKRRTAREKVVQCLFQIDMAEVPLTDAVALVMEE---SEENAQYLRYLLDGVLKNLT 57 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D +K YL LE + V++A+LR+A YE+ D P KV +NEAIE+AK F E S Sbjct: 58 EIDAEIKKYLRGWQLERIANVDRAILRLAFYEIMFEQDTPDKVVMNEAIEVAKLFSDEQS 117 Query: 120 HKFVNGVLDKAAP 132 H+++NGVL Sbjct: 118 HRYINGVLSSFLQ 130 >UniRef50_C4XHY8 N utilization substance protein B homolog n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XHY8_DESMR Length = 159 Score = 135 bits (341), Expect = 4e-31, Method: Composition-based stats. Identities = 40/141 (28%), Positives = 70/141 (49%), Gaps = 7/141 (4%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAE------QDVKDVDVLYFRELLAGVATN 58 +RR+AR+ A + LY + + D + EL+ GV N Sbjct: 12 SRRKARKQAFEFLYGLSFEPAADERSLLRLFKRCPHDVAEGEDDAGHEFAWELVLGVWRN 71 Query: 59 TAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 +D + + + + +VE +LR+A++E+ R D+P +V++NEAIEL+K +G E Sbjct: 72 QRDIDATIVRFSKNWKISRIAKVELTILRLAVHEILSRPDIPLRVSLNEAIELSKRYGDE 131 Query: 118 DSHKFVNGVLDKAAPVIRPNK 138 +S F+NG+LD A + + Sbjct: 132 NSRNFINGILDALAKAVDSGE 152 >UniRef50_Q2YYB7 N utilization substance protein B homolog n=59 Tax=Staphylococcus RepID=NUSB_STAAB Length = 129 Score = 135 bits (340), Expect = 5e-31, Method: Composition-based stats. Identities = 42/130 (32%), Positives = 69/130 (53%), Gaps = 2/130 (1%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +R+ +R A Q L+ ++ +D+ E + D+D + L++GV + LD Sbjct: 1 MSRKESRVQAFQTLFQLEMKDSDLTINEAISFIKDGNPDLDFEFIHWLVSGVKDHEPVLD 60 Query: 64 GLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + PYL + L + ++ +LR+A YE+ SD P KV +NEA+EL K F +D +KF Sbjct: 61 ETISPYLKDWTIARLLKTDRIILRMATYEILH-SDTPAKVVMNEAVELTKQFSDDDHYKF 119 Query: 123 VNGVLDKAAP 132 +NGVL Sbjct: 120 INGVLSNIKK 129 >UniRef50_A4TBX3 N utilization substance protein B homolog n=18 Tax=Actinomycetales RepID=NUSB_MYCGI Length = 164 Score = 135 bits (340), Expect = 6e-31, Method: Composition-based stats. Identities = 47/130 (36%), Positives = 70/130 (53%), Gaps = 5/130 (3%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVL----YFRELLAGVATNTAY 61 R +AR+ AV L+ + A+V A D D+ Y + GV + A+ Sbjct: 10 RHQARKRAVDLLFEAEARGITAAEVAEARNALADNGADDIAPLNPYTVTVARGVTDHAAH 69 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D L+ +L L+ L V++AVLR+A++EL DVP VA++EA+ELAK +DS Sbjct: 70 IDDLISAHLQGWTLDRLPAVDRAVLRVAVWELLHAVDVPEPVAVDEAVELAKQLSTDDSP 129 Query: 121 KFVNGVLDKA 130 FVNGVL + Sbjct: 130 GFVNGVLGQV 139 >UniRef50_C6R1D5 Ribosomal RNA small subunit methyltransferase B n=1 Tax=Rothia mucilaginosa ATCC 25296 RepID=C6R1D5_9MICC Length = 659 Score = 135 bits (340), Expect = 6e-31, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 56/139 (40%), Gaps = 5/139 (3%) Query: 3 PAARRR----ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATN 58 P+AR R AR L S S V + + + D + EL G + Sbjct: 155 PSARSRTADTARATVFDVLRSVAESDAYANLVLPKAIRSHRLDHRDAGFATELTYGTLRH 214 Query: 59 TAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 D ++ + R +E++G VLR+ +++L VP A+N+++ LA+ Sbjct: 215 QGTYDAILSRCVDRPIEKVGTTTLIVLRMGVHQLLNM-RVPAHAALNQSVSLAREKIGAG 273 Query: 119 SHKFVNGVLDKAAPVIRPN 137 F+N VL + + Sbjct: 274 PASFINAVLRRVSERTPEE 292 >UniRef50_UPI0001C335A0 ribosomal RNA small subunit methyltransferase RsmB n=3 Tax=Cyanobacteria RepID=UPI0001C335A0 Length = 453 Score = 135 bits (340), Expect = 6e-31, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 57/137 (41%), Gaps = 3/137 (2%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK + AR+ ++ L + + I ++ D EL+ G+ Sbjct: 1 MKVSN---ARQLVLKILREIDKNNSFINISLDSAFKHNELSRQDRGLCTELVYGIIRCQR 57 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD L+ ++ ++ V + +L I LY+L VP A+N +++LAK+ Sbjct: 58 TLDSLIDQLGNKKSQKQSPVLRRILHIGLYQLLYLDHVPLSAAVNTSVDLAKNNNLNVLS 117 Query: 121 KFVNGVLDKAAPVIRPN 137 K VN +L + V + Sbjct: 118 KVVNAILREYIRVKKKE 134 >UniRef50_C4V0R0 rRNA SAM-dependent methyltransferase RmsB n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V0R0_9FIRM Length = 449 Score = 134 bits (339), Expect = 7e-31, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 1/126 (0%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 R RE A+Q L + L + + D + EL+ G LD +++ Sbjct: 12 RIREQAMQVLLRIHSEGAYANVALAEELRIAQMTERDRRFLTELVYGTVKAGETLDYMIR 71 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 Y++ L++ + +LR+ Y++ +P + A+ELAK G + + FVNGVL Sbjct: 72 RYVA-DLKKAQPPIRELLRLGFYQIFFMDKIPSSAVCHTAVELAKKHGGKGAASFVNGVL 130 Query: 128 DKAAPV 133 A Sbjct: 131 RTALRE 136 >UniRef50_B8FHH2 Sun protein n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FHH2_DESAA Length = 455 Score = 134 bits (339), Expect = 7e-31, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 62/137 (45%), Gaps = 2/137 (1%) Query: 1 MKP-AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATN 58 MKP A + ++R A + L + + V + L ++ + D L+ GV N Sbjct: 1 MKPPAGKDKSRITAARILDRLESGDQVLDVVLDRALDKEPGLTRKDRALVMALVYGVLRN 60 Query: 59 TAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 +D ++ + L+++ +LR+ +++L VP +A++ ++E+AK Sbjct: 61 RGRIDWIISSFSKTKLKKIQPEILNILRMGVFQLLFLDRVPPALAVDSSVEMAKKAAPVF 120 Query: 119 SHKFVNGVLDKAAPVIR 135 KFVNG+L R Sbjct: 121 VSKFVNGLLRNVERKGR 137 >UniRef50_C1QBG1 Transcription antitermination factor NusB n=1 Tax=Brachyspira murdochii DSM 12563 RepID=C1QBG1_9SPIR Length = 187 Score = 134 bits (339), Expect = 8e-31, Method: Composition-based stats. Identities = 43/132 (32%), Positives = 78/132 (59%), Gaps = 2/132 (1%) Query: 4 AARRRARECAVQALYSWQLSQNDIADV-EYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 ARR+AR AV +LYS+++++ I+ F ++ + + + R L+ G N + Sbjct: 53 GARRQARIYAVMSLYSYEINERKISINNILDFDYDKKIPENIFAFTRNLVEGTIKNLERI 112 Query: 63 DGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D L++ Y + ++ + V+K+++R+++Y L D+P V I+EA+E+AK F +DS+K Sbjct: 113 DSLIEKYSNNWDIKRIQYVDKSIIRMSIYSLIFLKDIPKSVVIDEAVEIAKIFSDKDSYK 172 Query: 122 FVNGVLDKAAPV 133 FVNG+LD Sbjct: 173 FVNGILDGIQEE 184 >UniRef50_Q03RR0 N utilization substance protein B homolog n=23 Tax=Lactobacillus RepID=NUSB_LACBA Length = 142 Score = 134 bits (338), Expect = 9e-31, Method: Composition-based stats. Identities = 44/129 (34%), Positives = 67/129 (51%), Gaps = 4/129 (3%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKD--VDVLYFRELLAGVATNTA 60 R + RE A Q L++ + D YQ + D Y L+ GV + + Sbjct: 2 TLTRHQIRERAFQMLFALNANPEADHDALYQRVLTDDPNQLVPVPDYLATLVNGVLAHQS 61 Query: 61 YLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 LD + YLS L+ + + + +LR+A YE+ DVP +VA+NEA+ELAK+F + Sbjct: 62 ELDAQIDQYLSTGWQLKRIAKTDLVILRMAFYEIEHVDDVPNRVAVNEALELAKNFSDDR 121 Query: 119 SHKFVNGVL 127 S +F+NGVL Sbjct: 122 SRRFINGVL 130 >UniRef50_C9LLK5 Ribosomal RNA small subunit methyltransferase B n=1 Tax=Dialister invisus DSM 15470 RepID=C9LLK5_9FIRM Length = 454 Score = 134 bits (338), Expect = 9e-31, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 50/125 (40%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR A +ALY L +K + EL+ GV Y ++ Sbjct: 12 ARTLAFEALYEIFEKNAYANLTIQSILRWCPLKKEERHLLTELIYGVCRKYNYCLWMISL 71 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 R + ++ + +L + +Y++ +P A+NE +++AK + KF+NGVL Sbjct: 72 ISDRPMFKIHPAVRILLALGIYQIVFLDRIPESAAVNETVKIAKKVTHIGNVKFINGVLR 131 Query: 129 KAAPV 133 Sbjct: 132 NFLRR 136 >UniRef50_B9LDT2 N utilization substance protein B homolog n=6 Tax=Chloroflexi (class) RepID=NUSB_CHLSY Length = 151 Score = 134 bits (338), Expect = 1e-30, Method: Composition-based stats. Identities = 45/138 (32%), Positives = 74/138 (53%), Gaps = 3/138 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 + R R R A+Q L+ + + I V + L ++ + + R L+ G + +YLD Sbjct: 8 SQRHRVRIAALQILFEVDETDHAIDQVLERRLTDEPMSQESAEFLRRLVFGAWEHRSYLD 67 Query: 64 GLMKPYL-SRLLEELGQVEKAVLRIALYELSKRS--DVPYKVAINEAIELAKSFGAEDSH 120 +++ + + ++ V+KAVLRIAL+EL P K INEA+ELAK FG+++S Sbjct: 68 RIIEEAAPNWPVAQMPGVDKAVLRIALFELLIDDVERTPIKAVINEAVELAKQFGSDNSS 127 Query: 121 KFVNGVLDKAAPVIRPNK 138 +FVNGVL ++ Sbjct: 128 RFVNGVLGTVVTRYLADR 145 >UniRef50_C6BYC6 NusB antitermination factor n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BYC6_DESAD Length = 155 Score = 134 bits (338), Expect = 1e-30, Method: Composition-based stats. Identities = 52/139 (37%), Positives = 71/139 (51%), Gaps = 6/139 (4%) Query: 6 RRRARECAVQALYSWQL----SQNDIADVEYQFLAEQDVKDVD-VLYFRELLAGVATNTA 60 RR+ R A Q LY + Q A + D +L+ RELL G+ Sbjct: 10 RRKGRVLAFQVLYGLSFVPPHGGWTTERIYNQSPAVIRETEEDLILFARELLIGIWNAQE 69 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 LD ++ Y +E + +VE A+LR+A+YEL + D+P KV INE IELAK FG +S Sbjct: 70 ELDEVIGRYSKHWKIERIAKVELAILRLAVYELVHKPDIPLKVGINEGIELAKKFGDGNS 129 Query: 120 HKFVNGVLDKAAPVIRPNK 138 F+NG+LD A I K Sbjct: 130 RNFINGILDAVARDIDTGK 148 >UniRef50_C0EY63 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0EY63_9FIRM Length = 466 Score = 133 bits (337), Expect = 1e-30, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 55/137 (40%), Gaps = 2/137 (1%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDV-DVLYFRELLAGVATNT 59 M+ R R A+ L + ++ + L + D ++ L GV Sbjct: 14 MQMEKRTDMRAEALDTLIDIERNKKLSHIAIGETLMRNQFEKKADRAFYTRLCEGVTERK 73 Query: 60 AYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 YLD ++ Y +++ + +++LR+ Y++ DV A +EA+ LAK G Sbjct: 74 IYLDYILDHYSKTPMKKCKPLIRSLLRMGAYQILFM-DVRDAAACSEAVSLAKKRGFGRL 132 Query: 120 HKFVNGVLDKAAPVIRP 136 FVNGVL Sbjct: 133 SGFVNGVLRTLVREKEN 149 >UniRef50_B2A2K5 Sun protein n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A2K5_NATTJ Length = 462 Score = 133 bits (337), Expect = 1e-30, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 50/133 (37%), Gaps = 3/133 (2%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK + +RE A A Q V Q L + D+ D + G Sbjct: 1 MKIKS---SRELAFVAYTRIIQDQAYSNLVLNQLLGKTDLLAQDKALASRITYGTLQWQG 57 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D +K R L +L +LR+ Y++ VP ++NE +++A + Sbjct: 58 LIDYYLKTLSHRPLSKLSNKALFLLRMGAYQILFLDRVPPSASVNETVKVAHRRTHKGIA 117 Query: 121 KFVNGVLDKAAPV 133 FVNG+L Sbjct: 118 NFVNGILRNLIRK 130 >UniRef50_C0W1K3 16S rRNA m(5)C 967 methyltransferase n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0W1K3_9ACTO Length = 487 Score = 133 bits (337), Expect = 1e-30, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 1/131 (0%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 K A +AR A + L + V + + E ++ D + EL+ G N A Sbjct: 23 KQARVSKARTVAFETLLKVDVEDAYANIVLPKAITEANLDSRDASFATELVYGTLRNLAR 82 Query: 62 LDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 +D +++ + + + +L +A+LR+ +++ VP A+ E++EL K K Sbjct: 83 VDWVIEQCMPKKIADLDPEVRAILRLTAHQILHL-RVPDHAAVAESVELTKHVAGFGVEK 141 Query: 122 FVNGVLDKAAP 132 FVNGV Sbjct: 142 FVNGVARAMVE 152 >UniRef50_A8ZUK3 Sun protein n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZUK3_DESOH Length = 468 Score = 133 bits (337), Expect = 1e-30, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 3/134 (2%) Query: 2 KPAARRRA--RECAVQALYSWQLSQNDIADVEYQFLAEQDVKD-VDVLYFRELLAGVATN 58 +P A R++ R A++ L + + + V + LA + D L+ GV Sbjct: 12 RPTAARKSDPRAVALRILTALEKGHRTLDQVADEALARVSFPEKRDRALVTTLVYGVLRW 71 Query: 59 TAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 LD + + L+ + +LR+ L++L +P AIN +++L+K G Sbjct: 72 RNTLDYTIVHFSRTPLQRMDPAVLNILRLGLFQLRFLDRIPDFAAINSSVDLSKQAGLGR 131 Query: 119 SHKFVNGVLDKAAP 132 FVNG+L + Sbjct: 132 LSGFVNGLLRSSTR 145 >UniRef50_Q0TPD3 N utilization substance protein B homolog n=10 Tax=Clostridium RepID=NUSB_CLOP1 Length = 135 Score = 133 bits (337), Expect = 1e-30, Method: Composition-based stats. Identities = 44/135 (32%), Positives = 71/135 (52%), Gaps = 3/135 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDV--KDVDVLYFRELLAGVATNTAY 61 R ++RE +Q Y +++ + F+ +D+ D+D+ Y + L G+ N Sbjct: 1 MNRVKSREYLLQLAYQMEITSETALETFNSFMENEDISKDDLDLAYIKSGLLGIEENKEK 60 Query: 62 LDGLM-KPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD L+ + L + +V ++LRI+ YE+ DVP KV+INEAIEL K + S Sbjct: 61 LDSLIESQLVKWKLNRISKVNLSILRISTYEILFAEDVPGKVSINEAIELCKKYSDNKSV 120 Query: 121 KFVNGVLDKAAPVIR 135 F+NGVLDK ++ Sbjct: 121 SFINGVLDKVYKNMQ 135 >UniRef50_B9XNZ3 NusB antitermination factor n=1 Tax=bacterium Ellin514 RepID=B9XNZ3_9BACT Length = 185 Score = 133 bits (337), Expect = 1e-30, Method: Composition-based stats. Identities = 43/157 (27%), Positives = 69/157 (43%), Gaps = 26/157 (16%) Query: 4 AARRRARECAVQALYSWQLSQ-NDIADVEYQFLAEQD----------------------- 39 RR ARE AVQ L+ L+ + + F Q Sbjct: 21 GKRREARERAVQFLFQHDLNPPEKLEEALNHFWDSQRPAALAEDKGGATWGQKVELPAPT 80 Query: 40 -VKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSD 97 + ++ L+ G + D +K Y L + V++ +LR+A++E+ R D Sbjct: 81 AEEAAVRIFADPLIRGALEHRDEADAQIKKYAENWDLHRIAAVDRNILRLAIFEMLHRED 140 Query: 98 VPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVI 134 +P V+INEA+++AK F +S KFVNG+LDK + Sbjct: 141 IPPVVSINEAVDIAKKFSTYESGKFVNGILDKIKGEL 177 >UniRef50_B8DTW1 N utilization substance protein B homolog n=16 Tax=Actinobacteridae RepID=NUSB_BIFA0 Length = 154 Score = 133 bits (337), Expect = 1e-30, Method: Composition-based stats. Identities = 34/129 (26%), Positives = 64/129 (49%), Gaps = 1/129 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 AR AR A+ LY D + + +A+ + Y E++ GV + +D Sbjct: 1 MARSTARRRALNTLYEADEKGQDFLSLLDERIAQPGAQTPLPEYAIEIVRGVDEHRRDID 60 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + + + ++ + +++ +LRIA +E+ DVP KVAI+EA+ L+K+ + + F Sbjct: 61 SQLNTHSTGWKVKRMHAIDRNILRIATWEILYNDDVPDKVAIDEALNLSKTLSDDAAPSF 120 Query: 123 VNGVLDKAA 131 ++GVL Sbjct: 121 IHGVLSAIV 129 >UniRef50_B8ZUK7 N utilization substance protein B homolog n=16 Tax=Actinomycetales RepID=NUSB_MYCLB Length = 190 Score = 133 bits (336), Expect = 1e-30, Method: Composition-based stats. Identities = 43/130 (33%), Positives = 71/130 (54%), Gaps = 6/130 (4%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVL----YFRELLAGVATNTAY 61 R +AR+ AV L+ + ++ + + +DV Y + GV+ +TA Sbjct: 8 RHQARKRAVDLLFEAEARDLSPLEII-EVRSALAKSKLDVAPLHPYTVVVAQGVSEHTAR 66 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D L+ +L L+ L V++A+LR++++EL DVP VA++EA+ELAK +DS Sbjct: 67 IDELIISHLQGWKLDRLPAVDRAILRVSIWELLYADDVPEPVAVDEAVELAKELSTDDSP 126 Query: 121 KFVNGVLDKA 130 FVNG+L K Sbjct: 127 GFVNGLLGKV 136 >UniRef50_B7DR17 NusB antitermination factor n=1 Tax=Alicyclobacillus acidocaldarius LAA1 RepID=B7DR17_9BACL Length = 165 Score = 133 bits (336), Expect = 2e-30, Method: Composition-based stats. Identities = 50/139 (35%), Positives = 76/139 (54%), Gaps = 3/139 (2%) Query: 4 AARRRARECAVQALYSWQL-SQNDIADVEYQFLAEQDVK-DVDVLYFRELLAGVATNTAY 61 R ARECA+QAL + A+ LAE+ + D Y EL+ G + Sbjct: 1 MTRHEARECALQALCVLDVQRDLGSAEAIASVLAERGLDAGGDWAYIEELVDGTRRHLGE 60 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D L+ ++ R E +G+VE+ VLR+A YEL ++P AI+EA+++AK+F E S Sbjct: 61 IDELLARHMERWSPERIGRVERNVLRLATYELLFEPELPIASAIDEAVQIAKTFATEQSG 120 Query: 121 KFVNGVLDKAAPVIRPNKK 139 +FVNGVL K P + ++ Sbjct: 121 RFVNGVLAKLLPAVADRRR 139 >UniRef50_D2NSI1 tRNA and rRNA cytosine-C5-methylase n=2 Tax=Micrococcaceae RepID=D2NSI1_9MICC Length = 697 Score = 133 bits (336), Expect = 2e-30, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 5/139 (3%) Query: 3 PAARRR----ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATN 58 P+AR R AR + L S S V + + + D + EL G + Sbjct: 193 PSARSRTADTARATVFEVLRSVAESDAYANLVLPKAIRSHRLDHRDAGFATELTYGTLRH 252 Query: 59 TAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 D +++ + R LE++G VLR+ +++L VP A+N+++ LA+ Sbjct: 253 QGTYDAILRHCVDRPLEKVGTTTLIVLRMGVHQLLNM-RVPAHAALNQSVSLAREKIGAG 311 Query: 119 SHKFVNGVLDKAAPVIRPN 137 F+N VL + + Sbjct: 312 PASFINAVLRRVSERTPEE 330 >UniRef50_B3DQ30 N utilization substance protein B homolog n=7 Tax=Actinobacteridae RepID=NUSB_BIFLD Length = 190 Score = 133 bits (336), Expect = 2e-30, Method: Composition-based stats. Identities = 40/128 (31%), Positives = 67/128 (52%), Gaps = 1/128 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 AR AR+ A+ LY DI + + +A + Y E++ GVA + +D Sbjct: 1 MARSTARKRALNTLYEADEKSQDILSLLDERIAHPGAQTPLPDYAIEIVKGVAEHRRQID 60 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + + + + +G V++ +LRIA +E+ DVP KVAI+EA+ LAK+ +DS F Sbjct: 61 MTLDEHSTGWKVRRMGVVDRNILRIAAWEILFTDDVPDKVAIDEALALAKTLCDDDSPAF 120 Query: 123 VNGVLDKA 130 ++G+L Sbjct: 121 IHGLLSAV 128 >UniRef50_A8VXB3 Acetyl-CoA carboxylase, biotin carboxyl carrier protein n=2 Tax=Bacillus RepID=A8VXB3_9BACI Length = 134 Score = 133 bits (336), Expect = 2e-30, Method: Composition-based stats. Identities = 54/140 (38%), Positives = 76/140 (54%), Gaps = 8/140 (5%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK RR AR A+QALY +++ + + L E + D Y L+ V Sbjct: 1 MK---RRVARIKAIQALYQVEMTGVNPEEAIKTVLEENESMDP---YLLTLVERVLEEMD 54 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF-GAED 118 LD ++ + L L +V++A++RIA+YE+ DVP VAINEAI+LA+ F G E+ Sbjct: 55 ELDIKIQDSMDNWQLSRLARVDRAIMRIAMYEMIHSDDVPVSVAINEAIDLARGFSGDEE 114 Query: 119 SHKFVNGVLDKAAPVIRPNK 138 S KFVNGVL AA + N Sbjct: 115 SGKFVNGVLSNAAKKLEVND 134 >UniRef50_B2A534 N utilization substance protein B homolog n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=NUSB_NATTJ Length = 139 Score = 133 bits (336), Expect = 2e-30, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 79/139 (56%), Gaps = 4/139 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFL---AEQDVKDVDVLYFRELLAGVATNTA 60 +RR ARE +++ ++ + + + +V + + A++++ + Y +++ +N Sbjct: 1 MSRRTAREASMKLVFQMAFNDDHVDEVGAEDILAQAKEELNYNNYQYIETVVSRTESNLQ 60 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D ++ + ++ L +V+ ++LR+A+ E+ D+P +V+INEA+ELAK F + + Sbjct: 61 KIDEYIEKFSENWKIDRLSKVDLSILRLAISEILFFDDIPTRVSINEAVELAKKFSTDKA 120 Query: 120 HKFVNGVLDKAAPVIRPNK 138 ++NG+LD+ A + + Sbjct: 121 SGYINGILDQVANQLNKAR 139 >UniRef50_C9L6W4 Ribosomal RNA small subunit methyltransferase B n=12 Tax=Clostridiales RepID=C9L6W4_RUMHA Length = 454 Score = 133 bits (335), Expect = 2e-30, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 1/125 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNTAYLDGLMKP 68 RE + L V L + ++ + + + G LD ++ Sbjct: 8 RELVLGILLEINKEGQHSHLVIRSTLEKYQYLEKQERAFLTRVCEGTLEYKLRLDYILDQ 67 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 Y S +E++ V + +LR ++Y+L +VP +EA++LA+ G + FVNGVL Sbjct: 68 YSSVPVEKMKPVIREILRSSVYQLLYMDNVPDSAVCDEAVKLARKKGFYNLTGFVNGVLR 127 Query: 129 KAAPV 133 K A Sbjct: 128 KVARE 132 >UniRef50_C0R001 Transcription antitermination protein NusB n=1 Tax=Brachyspira hyodysenteriae WA1 RepID=C0R001_BRAHW Length = 181 Score = 132 bits (334), Expect = 3e-30, Method: Composition-based stats. Identities = 42/133 (31%), Positives = 78/133 (58%), Gaps = 4/133 (3%) Query: 4 AARRRARECAVQALYSWQLSQ--NDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 ARR+AR AV +LYS++++ I ++ F ++ + + + R L+ G N Sbjct: 47 GARRQARIYAVMSLYSYEINDRKETINEIL-SFDYDKKIPENIFEFTRTLVEGTINNLER 105 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D L++ Y + ++ + V+K+++R+++Y L D+P V I+EA+E++K F +DS+ Sbjct: 106 IDNLIEKYSNNWDIKRIQYVDKSIIRMSIYSLIFLKDIPKSVVIDEAVEISKIFSDKDSY 165 Query: 121 KFVNGVLDKAAPV 133 KFVNG+LD Sbjct: 166 KFVNGILDGIQEK 178 >UniRef50_B8H535 N utilization substance protein B homolog n=4 Tax=Caulobacteraceae RepID=NUSB_CAUCN Length = 149 Score = 132 bits (334), Expect = 3e-30, Method: Composition-based stats. Identities = 52/144 (36%), Positives = 71/144 (49%), Gaps = 10/144 (6%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQF--------LAEQDVKDVDVLYFRELLA 53 + R AR AVQALY ++S + V +F + + + D +F +L Sbjct: 5 RIQPRSVARLAAVQALYQMEVSGAGVDSVIREFGEHRFDRDVEGEQLAAADETFFADLAR 64 Query: 54 GVATNTAYLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELA 111 GV TN A +D + L+ LE L +AVLR +EL RSDVP +V INE +E+A Sbjct: 65 GVVTNQAKIDQGIVKRLASGWRLERLDATARAVLRAGAFELMYRSDVPTEVVINEYVEIA 124 Query: 112 KSFGAEDSHKFVNGVLDKAAPVIR 135 KSF F+NG LD A R Sbjct: 125 KSFFEGPESGFINGALDAIARDAR 148 >UniRef50_Q1AW09 N utilization substance protein B homolog n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=NUSB_RUBXD Length = 139 Score = 132 bits (334), Expect = 3e-30, Method: Composition-based stats. Identities = 39/126 (30%), Positives = 65/126 (51%), Gaps = 4/126 (3%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +RR AR+ A LY ++ + + ++ A + + Y ++ GV LD Sbjct: 1 MSRRTARKQAFFILYQSDVTGSPAEPLIGRWRAYRGELE---DYAERVVRGVERERERLD 57 Query: 64 GLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ + + V++ +LR+ALYE+ DVP +VA+NEA+ELAK F E++ F Sbjct: 58 AVLDGVSEGWPVWRMSAVDRTILRLALYEMLHVQDVPPEVAVNEAVELAKGFSGEEAPSF 117 Query: 123 VNGVLD 128 V GVL Sbjct: 118 VGGVLR 123 >UniRef50_D2B6P7 Transcription antitermination factor NusB n=3 Tax=Actinomycetales RepID=D2B6P7_STRRD Length = 136 Score = 132 bits (334), Expect = 3e-30, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 4/134 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +AR +AR A+ L+ + D V + L + Y ++ GV + A +D Sbjct: 2 SARGKARRRALDILFEAEARSQDPLSVLAERLERAE--PPVNEYTATIVEGVCRHRARID 59 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 L+ Y L+ + V++ +LR YEL DVP V I+E + LA ++S +F Sbjct: 60 ELITTYAEGWTLDRMPAVDRNLLRGGTYELLWMPDVPEGVVISEWVSLASELSTDESPQF 119 Query: 123 VNGVLDKAAPVIRP 136 VNG++ + ++P Sbjct: 120 VNGLMARF-KQLKP 132 >UniRef50_UPI00016C01E8 sun protein n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C01E8 Length = 229 Score = 132 bits (333), Expect = 4e-30, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 2/123 (1%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 RE V AL + + V + L ++ D E+ G +D ++ Sbjct: 5 REIVVDALVKVEKEGAYLQLVLKKDLE--ILESRDRGLATEIATGTLKYQIAIDYIINQV 62 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 S + ++ + ++RI++Y+L VP AINEA++LAKS G KFVNGVL Sbjct: 63 SSIKVSKMKPFIRNLMRISVYQLRYLDKVPAHAAINEAVKLAKSRGFAGLSKFVNGVLRS 122 Query: 130 AAP 132 Sbjct: 123 IER 125 >UniRef50_A9KM96 Sun protein n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KM96_CLOPH Length = 453 Score = 132 bits (333), Expect = 4e-30, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 1/129 (0%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQ-DVKDVDVLYFRELLAGVATNTAYLDGLMK 67 ARE + + V + L D+ D + L GV LD ++ Sbjct: 3 AREIVLTMCLKINEDKLPSHVVINETLKNYKDLSKQDRAFISRLCLGVLEQKLRLDYDLE 62 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 + ++++ V + VLRIA Y++ +P A +EA++L K G FVNG+L Sbjct: 63 RFSKIKVKKMKPVIRNVLRIAAYQIEFMEQIPDSAACDEAVKLVKKRGLGGLSGFVNGIL 122 Query: 128 DKAAPVIRP 136 + + Sbjct: 123 RNLSREFQK 131 >UniRef50_A0JX79 N utilization substance protein B homolog n=3 Tax=Actinomycetales RepID=NUSB_ARTS2 Length = 136 Score = 132 bits (333), Expect = 4e-30, Method: Composition-based stats. Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 3/130 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +AR +AR A+ L+ + DV + + Y E++ GV ++ A +D Sbjct: 2 SARGKARNRALDVLFEAEQRSLSAFDVLRSRREKT--DQIVNPYTLEIVEGVVSHQAAID 59 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ Y LE + V++ +LRI +EL DVP VA++EA+ LAK+ ++S F Sbjct: 60 EFLETYSQGWTLERMPSVDRIILRIGTWELLYNDDVPDGVAVSEAVALAKTLSTDESPSF 119 Query: 123 VNGVLDKAAP 132 +NG+L + Sbjct: 120 INGLLGRLQQ 129 >UniRef50_B6GCG9 Putative uncharacterized protein n=2 Tax=Collinsella RepID=B6GCG9_9ACTN Length = 216 Score = 132 bits (333), Expect = 4e-30, Method: Composition-based stats. Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 5/131 (3%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R AR A+Q L+ ++ + DV D Y ++ GV N +D Sbjct: 10 RTLARSQALQILFQAEVRGESVGDVLAGDFTLSKGPLAD--YAIQIARGVDANRERIDSA 67 Query: 66 MKPYLSRL-LEELGQVEKAVLRIALYELSKR--SDVPYKVAINEAIELAKSFGAEDSHKF 122 ++ + LE + ++ +LR A+YEL + + V INEA+E+AK++G +DS F Sbjct: 68 LRAVSANWSLERMPGADRNLLRAAVYELYFQVADTLDAAVVINEAVEIAKAYGTDDSAGF 127 Query: 123 VNGVLDKAAPV 133 VNGVL + Sbjct: 128 VNGVLGRIVRE 138 >UniRef50_C9KK33 Transcription antitermination factor NusB n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KK33_9FIRM Length = 143 Score = 132 bits (333), Expect = 4e-30, Method: Composition-based stats. Identities = 40/140 (28%), Positives = 68/140 (48%), Gaps = 11/140 (7%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEY---------QFLAEQDVKDVDVLYFRELLAG 54 +RR+ARE A+QAL+ L+ + AD E + + D + +L+ G Sbjct: 1 MSRRQAREVALQALFQLDLNPAESADQEEMQETLAIDTALGEAEAMSAHDRAFVAQLVHG 60 Query: 55 VATNTAYLDGLMKPYL-SRLLEELGQVEKAVLRIALYELSK-RSDVPYKVAINEAIELAK 112 N +D + +E + V++ + R+A YE+ + +AINEA+ELAK Sbjct: 61 TRANLEAIDAQIAANSREWKVERMAAVDRNLTRMATYEMCFAEEKLTPNIAINEAVELAK 120 Query: 113 SFGAEDSHKFVNGVLDKAAP 132 +G +DS ++VNG+L Sbjct: 121 KYGTDDSSRYVNGILGAIMK 140 >UniRef50_UPI0000E87F00 transcription antitermination protein NusB n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87F00 Length = 155 Score = 132 bits (333), Expect = 4e-30, Method: Composition-based stats. Identities = 54/136 (39%), Positives = 79/136 (58%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 RR++RE ++++Y ++Q DI ++ + D D + ++ GV N L Sbjct: 15 INNRRKSRELVMKSIYRGIVNQFDINQIKKDIREDPDFVRSDESMYLSIVEGVHNNFDSL 74 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 +K YL R +EL +E A+L +LYEL DVPY+V INEAIE+AKSFG D KF Sbjct: 75 KEEIKTYLDRSYDELSPIELAILFSSLYELKFSLDVPYRVVINEAIEVAKSFGGVDGFKF 134 Query: 123 VNGVLDKAAPVIRPNK 138 +NG+L+KAA R N+ Sbjct: 135 INGILNKAAQHNRKNE 150 >UniRef50_Q983A9 N utilization substance protein B homolog n=3 Tax=Alphaproteobacteria RepID=NUSB_RHILO Length = 155 Score = 132 bits (333), Expect = 4e-30, Method: Composition-based stats. Identities = 46/150 (30%), Positives = 79/150 (52%), Gaps = 11/150 (7%) Query: 1 MKPAARR-RARECAVQALYSWQLSQNDIADVEYQF--------LAEQDVKDVDVLYFREL 51 M+ A +R AR AVQALY ++ + + ++ ++ + ++ D +FR + Sbjct: 1 MRHANKRGAARLAAVQALYQMDVAGSGVFEITAEYEAFRLGKEVDGALYREADAQWFRAI 60 Query: 52 LAGVATNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIE 109 L GV + +D +++ L L L +A+LR +YEL KR DVP V ++E ++ Sbjct: 61 LTGVVEDQKTIDPVIRQALTDDWPLSRLDSTLRAILRAGVYELMKREDVPVAVIVSEYVD 120 Query: 110 LAKSFGAEDSHKFVNGVLDKAAPVIRPNKK 139 +AK+F ED K VN VLD+ + +R + Sbjct: 121 IAKAFYEEDEPKLVNAVLDRVSRRVRGEGR 150 >UniRef50_B8CWT0 Sun protein n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWT0_HALOH Length = 440 Score = 132 bits (332), Expect = 5e-30, Method: Composition-based stats. Identities = 33/128 (25%), Positives = 54/128 (42%), Gaps = 2/128 (1%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 +R+ A++ L V + L + D + EL+ GV LD ++ Sbjct: 4 SRKVAIKVLIEID-KGAYSNLVLNKELNKVS-DKRDRAFITELVYGVLRQKKRLDYMLSC 61 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 + R L ++ + LR+ALY++ VP + A+ E +E KSF + KF NGVL Sbjct: 62 FSKRPLRKMDNEVLSALRVALYQIEYTDSVPARAAVYETVEALKSFTGHGAVKFTNGVLR 121 Query: 129 KAAPVIRP 136 Sbjct: 122 SYLRNKDK 129 >UniRef50_A4W3P3 Transcription termination factor n=6 Tax=Streptococcus suis RepID=A4W3P3_STRS2 Length = 140 Score = 131 bits (331), Expect = 6e-30, Method: Composition-based stats. Identities = 45/138 (32%), Positives = 72/138 (52%), Gaps = 5/138 (3%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVL---YFRELLAGVAT 57 M R R+CA+QA+ S + Q + ++ +L +++ + V + L+ GVA Sbjct: 1 MMKNNRHALRKCALQAIVSLEFGQEPVQAAQFSYLYDREEEQEGVEIPLFLLNLVNGVAD 60 Query: 58 NTAYLDGLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG 115 LD + L L+ L ++K ++R+ L+E+ + P +VA+NEAIELAK F Sbjct: 61 YRDDLDKELSSRLKAGWTLDRLTLIDKNIMRLGLFEILHFEETPDRVAVNEAIELAKEFS 120 Query: 116 AEDSHKFVNGVLDKAAPV 133 E S KFVNGVL + Sbjct: 121 DESSAKFVNGVLSQFIKE 138 >UniRef50_UPI00016C04B6 transcription termination factor n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C04B6 Length = 135 Score = 131 bits (331), Expect = 7e-30, Method: Composition-based stats. Identities = 43/137 (31%), Positives = 71/137 (51%), Gaps = 4/137 (2%) Query: 4 AARRRARECAVQALYSWQLSQND-IADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 RR+AR C VQ LY+ + ++ + L D+K + E G+ N + Sbjct: 1 MTRRQARICVVQMLYNLSFHDKEQAQEILNENL--LDIKGKVKTFISETFEGIVDNMDAI 58 Query: 63 DGLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D ++ L L + +V+ +LR+A+YE++ D+P KVAINEA+E+A+ + E S K Sbjct: 59 DTEIEANLVDWNLSRIAKVDLMILRLAVYEINYAKDLPPKVAINEAVEIAQEYSTEKSGK 118 Query: 122 FVNGVLDKAAPVIRPNK 138 F+NG+L + N Sbjct: 119 FINGILGNMNKKVSSNG 135 >UniRef50_B9E6Q9 N utilization substance protein B homolog n=6 Tax=Staphylococcaceae RepID=NUSB_MACCJ Length = 130 Score = 131 bits (330), Expect = 7e-30, Method: Composition-based stats. Identities = 43/131 (32%), Positives = 73/131 (55%), Gaps = 4/131 (3%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +R +RE A+Q L+ + ++ VE + + DV + EL+ GV + LD Sbjct: 1 MSRTESREHAIQILFQIE-NEAHEISVEDATRFIVEPPNRDV-FADELVHGVISKQNELD 58 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + P+L LE L ++++ +LR++ +EL +D P KV +NEA+ LAK F ++S+KF Sbjct: 59 DKITPHLKSWALERLNKIDRIILRLSAFELLY-TDAPEKVIVNEAVNLAKKFSDDESYKF 117 Query: 123 VNGVLDKAAPV 133 +NGVL + Sbjct: 118 INGVLSEIIKN 128 >UniRef50_Q2S6K8 N utilization substance protein B homolog n=1 Tax=Salinibacter ruber DSM 13855 RepID=NUSB_SALRD Length = 160 Score = 131 bits (330), Expect = 8e-30, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 65/138 (47%), Gaps = 2/138 (1%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQ-DVKDVDVLYFRELLAGVATNTAYL 62 ++RR ARE ++ LY+ + + D + + D + L Sbjct: 2 SSRRDAREQVMKTLYANEQTDGDAEQALHALVRVPLDEDPSTRDFAEHLFRETLKTMEEA 61 Query: 63 DGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D +++ + + + +++++LR+A EL K +VP KV+++EAIE+AK + S Sbjct: 62 DEIIEKHADNWEIHRIAAIDRSLLRMATTELLKFEEVPPKVSVDEAIEIAKRYSTPRSGT 121 Query: 122 FVNGVLDKAAPVIRPNKK 139 FVNGV+D + + Sbjct: 122 FVNGVIDAILLDLHDQGR 139 >UniRef50_C4FTS3 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FTS3_9FIRM Length = 154 Score = 131 bits (330), Expect = 8e-30, Method: Composition-based stats. Identities = 46/145 (31%), Positives = 72/145 (49%), Gaps = 10/145 (6%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDV------LYFRELLAGV 55 K + R + RE AVQ ++ Q ++ + A + D + Y L+ GV Sbjct: 10 KMSNRHQVREKAVQTIFQLIRPQVPVSLDQACAFALEAGNDPEAGFEGSDAYLDRLVQGV 69 Query: 56 ATNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSK--RSDVPYKVAINEAIELA 111 LD + YL L+ L +++ A+LR+A YEL +VP KVA+NEA+ELA Sbjct: 70 NQTAEELDQRISHYLAEDWTLDRLARIDLAILRVAFYELLYVSEDEVPSKVAVNEAVELA 129 Query: 112 KSFGAEDSHKFVNGVLDKAAPVIRP 136 K+F + S +F+NGVL ++ Sbjct: 130 KTFSDDKSKQFINGVLAGLLKDLKN 154 >UniRef50_C0GIQ4 Sun protein n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GIQ4_9FIRM Length = 451 Score = 131 bits (330), Expect = 8e-30, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 55/133 (41%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 M + ARE ++ AL + + + L+ + D E+ GV T Sbjct: 1 MTRKRKIDAREASLLALQRVEADDAYVNLALDEVLSSHSLDPRDKRLAAEITYGVITYKL 60 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD L++ R +++L + +LRI Y+L VP A++ +EL K Sbjct: 61 TLDWLIEKVSGRPIKKLDKPIHQILRIGFYQLFYLDRVPPAAAVHATVELVKKGKKRGLA 120 Query: 121 KFVNGVLDKAAPV 133 FVNGV+ A Sbjct: 121 PFVNGVMRGALRK 133 >UniRef50_A4XLC1 N utilization substance protein B homolog n=2 Tax=Clostridia RepID=NUSB_CALS8 Length = 142 Score = 131 bits (330), Expect = 9e-30, Method: Composition-based stats. Identities = 44/134 (32%), Positives = 75/134 (55%), Gaps = 6/134 (4%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVE-----YQFLAEQDVKDVDVLYFRELLAGVATN 58 RR+ RE ++ LY+++ N+ +E + +++ K++D Y ++LL GV N Sbjct: 2 HKRRKTRELCMKILYAYRFQNNEYDIIEFLNKFKELNPDENFKEIDEEYLKKLLTGVIRN 61 Query: 59 TAYLDGLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 +D L++ Y L + VE ++RIA+YEL ++P VAI+EA++L+ FG E Sbjct: 62 QQLIDNLIEKYSKDWPLSRIPMVELELMRIAIYELLFEEEIPISVAIDEAVDLSSIFGVE 121 Query: 118 DSHKFVNGVLDKAA 131 + FVNG+L A Sbjct: 122 KAPSFVNGILGSIA 135 >UniRef50_C8W9W3 NusB antitermination factor n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8W9W3_ATOPD Length = 167 Score = 131 bits (330), Expect = 9e-30, Method: Composition-based stats. Identities = 42/140 (30%), Positives = 71/140 (50%), Gaps = 7/140 (5%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVE--YQFLAEQDVKDVDVLYFRELLAGVATNT 59 K R RAR A+Q L+ + + + +V L+E + Y R L G Sbjct: 4 KFFGRTRARSQALQLLFQAEATNRSVLEVLGGDYTLSEGPLD----EYARLLAVGADGIR 59 Query: 60 AYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED 118 LD ++ Y ++ + V++ +LRI+LYE+ K +V VAINE ++LA+++ +D Sbjct: 60 DDLDDIIAAYSKDWSIDRMPSVDRNLLRISLYEILKVPEVDVAVAINEVVDLARAYCGDD 119 Query: 119 SHKFVNGVLDKAAPVIRPNK 138 S +F+NGVL + I + Sbjct: 120 SPRFINGVLGRIVDDIDAGE 139 >UniRef50_D2RJI2 NusB antitermination factor n=2 Tax=Acidaminococcus RepID=D2RJI2_ACIFE Length = 139 Score = 131 bits (330), Expect = 9e-30, Method: Composition-based stats. Identities = 45/136 (33%), Positives = 73/136 (53%), Gaps = 6/136 (4%) Query: 4 AARRRARECAVQALYSWQLSQN-DIADVEYQFLAEQDVKD---VDVLYFRELLAGVATNT 59 +RR AR A+++L++ + S + E+D++D D+ Y +L+ GV N Sbjct: 1 MSRRDARTIAMRSLFALEFSPEQSPEETVRTMAEEEDIQDTRKKDLAYALDLVKGVRENQ 60 Query: 60 AYLDGLMKPY-LSRLLEELGQVEKAVLRIALYELSKRSD-VPYKVAINEAIELAKSFGAE 117 LDG + L+ + +++ +LRIA YE+ + VP VAINEA+ELAK +G + Sbjct: 61 EALDGELNGLDAKWTLKRMNGIDRNLLRIAGYEMFCSPEPVPPAVAINEAVELAKVYGGD 120 Query: 118 DSHKFVNGVLDKAAPV 133 DS F+NG+L Sbjct: 121 DSPAFINGLLGSLVKK 136 >UniRef50_B0REX0 N utilization substance protein B homolog n=4 Tax=Actinobacteria (class) RepID=NUSB_CLAMS Length = 137 Score = 131 bits (330), Expect = 9e-30, Method: Composition-based stats. Identities = 43/132 (32%), Positives = 71/132 (53%), Gaps = 4/132 (3%) Query: 4 AARRRARECAVQALYSWQLSQNDIAD---VEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 +AR +AR+ A+ LY + I VE Q A + + Y RE+ G + Sbjct: 2 SARTKARKRALDVLYVADIRGESIPATLAVEQQRAAAEPDRQASWAYAREIAEGFVEHQD 61 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D L++ Y L + V++A+LRI ++E+ +DVP VAI+E+++LA S ++S Sbjct: 62 EIDELIETYSVNWTLARMPAVDRAILRIGIWEILFNADVPDGVAISESVDLASSLSTDES 121 Query: 120 HKFVNGVLDKAA 131 FVNG+L + A Sbjct: 122 ASFVNGMLARIA 133 >UniRef50_Q3AAM1 N utilization substance protein B homolog n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=NUSB_CARHZ Length = 144 Score = 130 bits (329), Expect = 1e-29, Method: Composition-based stats. Identities = 47/139 (33%), Positives = 72/139 (51%), Gaps = 6/139 (4%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQD-----VKDVDVLYFRELLAGVATN 58 R ARE A +AL+ + D AE+ + V + REL+ GV Sbjct: 1 MNRHTARELAFKALFGLDFAPEKTLDTLESLWAEKIAEGKIPPEKLVDFSRELVRGVIEK 60 Query: 59 TAYLDGLMKP-YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 LD +++ + + L +V+K +LR+ALYE+ R D+ V+I+EA+ELAK +G E Sbjct: 61 KERLDEIIRRRAIGWDFKRLAKVDKTLLRLALYEMLYRPDIDIPVSIDEAVELAKVYGEE 120 Query: 118 DSHKFVNGVLDKAAPVIRP 136 +S KF+NG+L A I Sbjct: 121 ESPKFINGILGYVAEHIDE 139 >UniRef50_C8WXH1 NusB antitermination factor n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WXH1_ALIAD Length = 166 Score = 130 bits (328), Expect = 1e-29, Method: Composition-based stats. Identities = 51/139 (36%), Positives = 75/139 (53%), Gaps = 3/139 (2%) Query: 4 AARRRARECAVQALYSWQL-SQNDIADVEYQFLAEQDVK-DVDVLYFRELLAGVATNTAY 61 R ARECA+QAL + A+ LAE+ D Y EL+ G + Sbjct: 1 MTRHEARECALQALCVLDVQRDLGSAEAIASALAERGTDAGGDFTYIEELVDGTRRHLDE 60 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D L+ ++ R E +G+VE+ VLR+A YEL ++P AI+EA+E+AK+F E S Sbjct: 61 IDELLARHMERWSPERIGRVERNVLRLATYELLFEPELPIASAIDEAVEIAKTFATEQSG 120 Query: 121 KFVNGVLDKAAPVIRPNKK 139 +FVNGVL K P + ++ Sbjct: 121 RFVNGVLAKLLPAVADRRR 139 >UniRef50_C4V2M6 Transcription antitermination protein NusB n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V2M6_9FIRM Length = 137 Score = 130 bits (328), Expect = 1e-29, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 67/136 (49%), Gaps = 5/136 (3%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQ---DVKDVDVLYFRELLAGVATNTA 60 +RR ARE A+ L+ + + V LA + + D+ Y L+ G + Sbjct: 1 MSRRHAREAALLTLFQREFDHDRPPIVAAGDLASDAVDGLTEKDLAYANRLVQGTCSVQP 60 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSK-RSDVPYKVAINEAIELAKSFGAED 118 +D ++ L + V++ ++R+A YE+ + +AINEA+ELAK +G++D Sbjct: 61 EIDAAIECMAKEWKLHRMAPVDRNLIRMAYYEMCYQEERIDPPIAINEAVELAKKYGSDD 120 Query: 119 SHKFVNGVLDKAAPVI 134 + ++VNG+L + Sbjct: 121 AGRYVNGILAALQKSM 136 >UniRef50_B5YE05 N utilization substance protein B homolog n=2 Tax=Dictyoglomus RepID=NUSB_DICT6 Length = 144 Score = 130 bits (328), Expect = 2e-29, Method: Composition-based stats. Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 8/132 (6%) Query: 6 RRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGL 65 R R RE +Q L+ L Q +VE F D + L G D + Sbjct: 5 RTRCREKVLQLLFQKDLGQ----EVEVDF---SDFSPQGQAFAYRLYDGALQYKDLADSI 57 Query: 66 MKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVN 124 + + LE +G +E+ +LR+A+ E+ SD+P V +NEA+ELAK + + ++ +FVN Sbjct: 58 ISRFSKNWKLERMGALERNILRLAIAEMFTFSDIPQAVTVNEAVELAKKYVSPEAGRFVN 117 Query: 125 GVLDKAAPVIRP 136 G+L Sbjct: 118 GILRNIVRNWEE 129 >UniRef50_A0LUG6 N utilization substance protein B homolog n=2 Tax=Actinomycetales RepID=NUSB_ACIC1 Length = 145 Score = 130 bits (327), Expect = 2e-29, Method: Composition-based stats. Identities = 38/127 (29%), Positives = 65/127 (51%), Gaps = 3/127 (2%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 AR +AR+ A+ L+ L D ++ A Y L+ GVA + A +D Sbjct: 3 ARTKARKRALDVLFEADLRAADPLEILADHTARA--DTPVPEYAVRLVEGVAAHRAEIDR 60 Query: 65 LMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 +++ + L+ + V++ +LR+A+YEL ++VP V + EA++LA+ +S FV Sbjct: 61 IIEQFAVGWTLQRMPTVDRNILRLAIYELLWVTEVPDAVVLAEAVKLAQDLSTAESAPFV 120 Query: 124 NGVLDKA 130 NGVL Sbjct: 121 NGVLAAV 127 >UniRef50_A8SLT0 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SLT0_9FIRM Length = 134 Score = 130 bits (327), Expect = 2e-29, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 2/134 (1%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 R ARE ++ +Y + N D F+ D+ +V Y R+ + N +D Sbjct: 1 MTRSEAREWCMKLIYQLSIHNNFKCDEIESFIEYFDLPSSEVKYIRKNCKSIIDNLDNID 60 Query: 64 GLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 ++K L + +++ A+LR+A+ E+ D+P VAINEAIE+A + + S+K Sbjct: 61 NIIKENLEGCWNYNRIAKIDLAILRVAVNEIYYLDDIPESVAINEAIEIANKYSTDASYK 120 Query: 122 FVNGVLDKAAPVIR 135 F+NG+L + Sbjct: 121 FINGILGTIVRAKK 134 >UniRef50_Q3A7Z0 Sun protein n=2 Tax=Desulfuromonadales RepID=Q3A7Z0_PELCD Length = 451 Score = 130 bits (327), Expect = 2e-29, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 48/125 (38%), Gaps = 2/125 (1%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFL-AEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 R A L + L A D+ D EL+ GV LD ++ Sbjct: 7 RHIAFDILDKVH-NGAFADLALDSALQALPDMDVRDRALATELVYGVLRYRGRLDFALQQ 65 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 + L ++ +LR+ Y++ + +P A+ E +ELA+ + + F+NG+L Sbjct: 66 LCRKPLAKVEPAVLNLLRLGCYQILQLDRIPNHAAVFETVELARRLKLQRATGFINGILR 125 Query: 129 KAAPV 133 Sbjct: 126 GLVRQ 130 >UniRef50_C2D814 Putative uncharacterized protein n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D814_9ACTN Length = 239 Score = 129 bits (326), Expect = 2e-29, Method: Composition-based stats. Identities = 44/138 (31%), Positives = 71/138 (51%), Gaps = 7/138 (5%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEY--QFLAEQDVKDVDVLYFRELLAGVATNTAY 61 A R AR A+Q ++ + + DV L+E + D + + L G Sbjct: 11 AGRTLARSQALQLMFQAESRNMQVCDVLATNYLLSEGPLDD----FGKRLALGTDELRDK 66 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD L+ ++ L L V++ +LR+ALYE+ K DV V INE++ LAK++G ++S Sbjct: 67 LDALISRVITNWNLNRLLSVDRNILRLALYEMIKVDDVDIAVTINESVNLAKAYGTDESS 126 Query: 121 KFVNGVLDKAAPVIRPNK 138 FVNGVL + A ++ + Sbjct: 127 HFVNGVLGQVARMMENGR 144 >UniRef50_C4ZCZ0 N utilization substance protein B homolog n=5 Tax=Clostridiales RepID=NUSB_EUBR3 Length = 131 Score = 129 bits (326), Expect = 2e-29, Method: Composition-based stats. Identities = 41/131 (31%), Positives = 70/131 (53%), Gaps = 3/131 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQ--DVKDVDVLYFRELLAGVATNTAY 61 R + RE + L+ + + + L ++ + D + Y E + + + A Sbjct: 1 MTRSKIRENVFKMLFRVEFHDKSELAEQMELLNDELTNPTDEERQYIDEKCSAIIEHMAE 60 Query: 62 LDGLMKPYLSRLL-EELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD L+ + + +V+ A++R+A+YE+ D+P KV+INEA+ELAK +GA++S Sbjct: 61 LDALIDEKSTGWKTNRMAKVDLAIIRLAVYEIKFEDDIPTKVSINEAVELAKKYGADESG 120 Query: 121 KFVNGVLDKAA 131 FVNGVL K A Sbjct: 121 AFVNGVLAKFA 131 >UniRef50_D0LW51 NusB antitermination factor n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LW51_HALO1 Length = 150 Score = 129 bits (326), Expect = 2e-29, Method: Composition-based stats. Identities = 46/141 (32%), Positives = 74/141 (52%), Gaps = 4/141 (2%) Query: 1 MKPAARRRARECAVQALYSWQLSQ-NDIADVEYQFLAEQDV--KDVDVLYFRELLAGVAT 57 MK ARRRAR A+Q LY+ L+ + ++ D+ + + R L+ V Sbjct: 1 MKVGARRRARSYALQVLYALDLNPLEEPTRALLEYAGRFDLRIDEEAGDFARSLIEQVYP 60 Query: 58 NTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGA 116 + +D ++ +E + +V++ VLR+A+ ELS+ +V INEA+ELAK FG Sbjct: 61 HLERIDERIQTASRNWRIERMSRVDRNVLRLAVGELSQPDGAAARVVINEAVELAKRFGT 120 Query: 117 EDSHKFVNGVLDKAAPVIRPN 137 +S FVNG+LD+ R + Sbjct: 121 TESPAFVNGILDRVDQHKRDD 141 >UniRef50_C9RN69 NusB antitermination factor n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RN69_FIBSS Length = 146 Score = 129 bits (326), Expect = 2e-29, Method: Composition-based stats. Identities = 42/134 (31%), Positives = 70/134 (52%), Gaps = 1/134 (0%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 M + R AR A+Q LY+ ++S +AD L Q ++D Y +L+ V + A Sbjct: 1 MAQVSFRPARVFAMQLLYAMEISGGTVADALPGVLEAQPLQDNMKKYGMKLVDLVLAHKA 60 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 LD ++ + +E + +++ VLRIA+ EL ++P KV I+EA+++A F + S Sbjct: 61 ELDSEIEACSAHWGIERMATLDRIVLRIAMVELLYVPEIPMKVVISEAVQVAAKFSTDSS 120 Query: 120 HKFVNGVLDKAAPV 133 FVNG+L Sbjct: 121 GTFVNGLLAGFLQK 134 >UniRef50_UPI00016C38F9 Fmu, rRNA SAM-dependent methyltransferase:Nop2p n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C38F9 Length = 465 Score = 129 bits (325), Expect = 3e-29, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 62/130 (47%), Gaps = 1/130 (0%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR+ A L + A++ + ++ D + +L+ GV LD L+KP Sbjct: 5 ARQVAADVLNRSRSRDGFAAELVDDAVNAANLSPQDRRFVTQLVFGVIRRGGTLDALLKP 64 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 ++ + +LR+ ++L+ + VP A++E +ELA+ GA + FVNGVL Sbjct: 65 FIHLPTHAVQDRVWDLLRLGAFQLTFLTHVPKHAAVHETVELAEHVGAPKAKGFVNGVLR 124 Query: 129 KAAPVIRPNK 138 + A + ++ Sbjct: 125 RIA-ELTTDE 133 >UniRef50_A5KNU7 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=A5KNU7_9FIRM Length = 456 Score = 129 bits (325), Expect = 3e-29, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 53/130 (40%), Gaps = 1/130 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNTAYLDGLMKP 68 RE L + V + L + ++ + + + G + +D ++ Sbjct: 8 REIVAAILMEVTENGRYSHIVLREVLTKYQYLEKRERAFITRVTEGTLEHMTEIDYILDC 67 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 + ++++ + +A+LR A+Y++ +P +E+++LA G +VNGVL Sbjct: 68 FSKVKVKKMKPLIRAILRSAVYQIKYMDSIPDHAVCSESVKLAVKKGFSGLRGYVNGVLR 127 Query: 129 KAAPVIRPNK 138 I + Sbjct: 128 SVVKGIDEVE 137 >UniRef50_Q2JK83 Ribosomal RNA small subunit methyltransferase B n=1 Tax=Synechococcus sp. JA-2-3B'a(2-13) RepID=Q2JK83_SYNJB Length = 457 Score = 129 bits (325), Expect = 3e-29, Method: Composition-based stats. Identities = 31/126 (24%), Positives = 51/126 (40%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR+ A+ AL + V LA + D EL+ G+ LD L+ Sbjct: 3 ARQLALLALQKIERQNAYADLVLGHLLANSSLIPADRHLVSELVYGITRRRRTLDALIDC 62 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 R + + +L + LY+L+ +P AI+ ++ELA+ G VNG+L Sbjct: 63 LAQRPAHKQPPDLRLILHLGLYQLAFLDQIPASAAIHTSVELARQMGLGSLTGVVNGILR 122 Query: 129 KAAPVI 134 + Sbjct: 123 AYQRQV 128 >UniRef50_A7VX44 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VX44_9CLOT Length = 134 Score = 129 bits (325), Expect = 3e-29, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 68/137 (49%), Gaps = 6/137 (4%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK R ARE A ++ + + ++ +D+ + + + GV + Sbjct: 1 MK---RHEAREQAFFLIFERTFQEASLEELVESAQLARDIT--ICGFAQNVFHGVEKHGE 55 Query: 61 YLDGLMKPY-LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +DG+++ + + L +V +VLR A+YE+ +P V+INEA+E+AK++G+ + Sbjct: 56 EIDGMIEKHCIGWTKNRLSRVAVSVLRTAVYEMLYEEKIPVSVSINEAVEIAKTYGSTED 115 Query: 120 HKFVNGVLDKAAPVIRP 136 FVNGVL A + Sbjct: 116 ASFVNGVLGSVAKELES 132 >UniRef50_Q5FNA1 N utilization substance protein B homolog n=1 Tax=Gluconobacter oxydans RepID=NUSB_GLUOX Length = 160 Score = 128 bits (324), Expect = 4e-29, Method: Composition-based stats. Identities = 42/142 (29%), Positives = 69/142 (48%), Gaps = 15/142 (10%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVK-----------DVDVLYFRELLA 53 +R AR AVQAL+ + S + V QF+ + + D D+ F+E++ Sbjct: 15 SRTIARVAAVQALFQCEQSGDTAETVISQFIRHRRISSTASFDDGHIPDADLKLFQEIVL 74 Query: 54 GVATNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELA 111 GV +D + L L L V +A+LR A++E+ +D P ++ INE +++A Sbjct: 75 GVTRRQDDIDAKLSDVLPEQWPLPRLDPVLRALLRAAVFEI--GTDTPDRIIINEYLDVA 132 Query: 112 KSFGAEDSHKFVNGVLDKAAPV 133 F + D K VNG+LD + Sbjct: 133 HGFFSGDEPKMVNGILDTLSRR 154 >UniRef50_B7KB91 Sun protein n=19 Tax=Cyanobacteria RepID=B7KB91_CYAP7 Length = 452 Score = 128 bits (324), Expect = 4e-29, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 1/130 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R+ A+ L + Q + D+ ++D EL+ G+ LD ++ Sbjct: 9 RQLALIILRDIYQKEAYTDLALDQGIKRADLGNLDRGLVTELVYGIVRRQRTLDEIISQL 68 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 ++ + + +L I LY+L +P A+N ++ELAK VNG+L + Sbjct: 69 GTKKANQQPPDLRLILHIGLYQLRYLDQIPPSAAVNTSVELAKKNKLGKLSGVVNGILRQ 128 Query: 130 AAPVIRPNKK 139 I+ K Sbjct: 129 YDR-IKEQGK 137 >UniRef50_C7H0C2 Transcription antitermination factor NusB n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H0C2_9FIRM Length = 135 Score = 128 bits (324), Expect = 5e-29, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 67/132 (50%), Gaps = 1/132 (0%) Query: 5 ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64 R +AR A+Q ++ + + + + L++ + Y RE+ + V N +D Sbjct: 4 NRSKARTIAMQIIFQIPVHKTTDKVLVDKILSDYKNIGKEEAYIREVFSLVTDNIDAIDA 63 Query: 65 LMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123 + + ++ + +V+ A+LR+A+ E+ D+P VA+NEA+ +AK F + S KF+ Sbjct: 64 ELNAKMKGWTIDSIPKVDLAILRLAVAEICYAKDIPKVVAVNEAVRIAKKFSDDKSAKFI 123 Query: 124 NGVLDKAAPVIR 135 NG+L + Sbjct: 124 NGILANIGKDYK 135 >UniRef50_Q7USA9 N utilization substance protein B homolog n=2 Tax=Planctomycetaceae RepID=NUSB_RHOBA Length = 145 Score = 128 bits (323), Expect = 5e-29, Method: Composition-based stats. Identities = 43/139 (30%), Positives = 67/139 (48%), Gaps = 3/139 (2%) Query: 2 KPAARRRARECAVQALYSWQLSQ-NDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 + + RRRARE +Q LY L+ D A + + V + ELL G Sbjct: 4 RMSTRRRAREIVLQLLYEADLNDWRDAATSRKFIRSRLQGRKVLTDFAAELLDGTMARRD 63 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +D + + L + ++ VLR+ YE+ S P +VAI+EA+ LAK +G E+S Sbjct: 64 DIDAKLTKLSTNWALHRMPVTDRNVLRLGAYEILY-SGTPGQVAISEALTLAKRYGGENS 122 Query: 120 HKFVNGVLDKAAPVIRPNK 138 +F+NGVLD+ + Sbjct: 123 PRFINGVLDRLFKYHSNPE 141 >UniRef50_A8LE23 Fmu (Sun) domain protein n=3 Tax=Frankia RepID=A8LE23_FRASN Length = 495 Score = 128 bits (323), Expect = 5e-29, Method: Composition-based stats. Identities = 33/142 (23%), Positives = 57/142 (40%), Gaps = 7/142 (4%) Query: 1 MKPAARRR------ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAG 54 M +A RR AR A + L + + L+ + + D + EL G Sbjct: 1 MSVSAPRRGGTTDPARLLAWEVLRAVDERGAYANLLLPALLSGRRLSPRDRGFATELTYG 60 Query: 55 VATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 LDG++ SR + + + LR+ Y+L + VP + A+ ++L ++ Sbjct: 61 SLRAQGTLDGVLDTVTSRPVASVDPPVRDALRLGAYQLL-STRVPPRAAVASTVDLVRAT 119 Query: 115 GAEDSHKFVNGVLDKAAPVIRP 136 E +F N VL + A I Sbjct: 120 CGERPVRFANAVLRRVAARIEA 141 >UniRef50_B2IXU2 Sun protein n=1 Tax=Nostoc punctiforme PCC 73102 RepID=B2IXU2_NOSP7 Length = 487 Score = 128 bits (323), Expect = 5e-29, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 1/124 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R+ A AL + L + ++ D D EL+ G LD L+ + Sbjct: 5 RQLAFIALRDVH-KGAYADVALDRVLQKVNLPDRDRRLVTELVYGSVRRQRTLDTLIDQF 63 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 + Q + +L + Y+L + +P A+N ++LAK G FVNG+L + Sbjct: 64 AKNKSHQQPQDLRTILHLGFYQLRYQERIPASAAVNTTVQLAKENGFSGLTGFVNGLLRQ 123 Query: 130 AAPV 133 Sbjct: 124 YLRK 127 >UniRef50_Q4JVG6 N utilization substance protein B homolog n=5 Tax=Corynebacterium RepID=NUSB_CORJK Length = 202 Score = 128 bits (323), Expect = 6e-29, Method: Composition-based stats. Identities = 38/140 (27%), Positives = 70/140 (50%), Gaps = 6/140 (4%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVK----DVDVLYFRELLAGVAT 57 + +R +AR AV L+ + D ++ + ++ Y ++++ GVAT Sbjct: 19 RHGSRYKARRRAVDILFEAEFRDIDPVEIVEERISLAKDSANQVKPVPEYTQQIVPGVAT 78 Query: 58 NTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFG 115 N LD + +L L+ L V++AVLR+A +EL DVP +VA+ E +ELA + Sbjct: 79 NLDALDEAIALHLSSDWQLDRLPAVDRAVLRVAAWELKFNDDVPPQVAVVEGVELASEYS 138 Query: 116 AEDSHKFVNGVLDKAAPVIR 135 + + +++ VLD ++ Sbjct: 139 HDKAPSYIHAVLDGINKDLQ 158 >UniRef50_A8MFJ3 N utilization substance protein B homolog n=2 Tax=Alkaliphilus RepID=NUSB_ALKOO Length = 138 Score = 128 bits (323), Expect = 6e-29, Method: Composition-based stats. Identities = 40/131 (30%), Positives = 71/131 (54%), Gaps = 1/131 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 +R+ ARE ++ L+ ++ + L E +++ Y ++L N +D Sbjct: 1 MSRKLARELTMKVLFEMHINNDFNIQRVEHHLFEGSIEEQQKEYIHKVLNEAILNLEAID 60 Query: 64 GLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 +++ Y S L + V+ A+LR+A E+ D+PY+V+INEAIELAK +G++++ F Sbjct: 61 SIIEEYSTSWKLNRIANVDLAILRLAFSEIIYMKDIPYRVSINEAIELAKIYGSDETPNF 120 Query: 123 VNGVLDKAAPV 133 VNG+L K Sbjct: 121 VNGILGKYVEQ 131 >UniRef50_C8WEQ4 NusB antitermination factor n=4 Tax=Zymomonas mobilis RepID=C8WEQ4_ZYMMN Length = 157 Score = 128 bits (323), Expect = 6e-29, Method: Composition-based stats. Identities = 41/144 (28%), Positives = 67/144 (46%), Gaps = 10/144 (6%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQF--------LAEQDVKDVDVLYFRELLAG 54 AR AR AVQALY ++ + + + +F + + + +F +++ G Sbjct: 10 KNARSAARLAAVQALYQREMEKTPLNILLDEFHQYRLGATIEDATYTKAEPSFFDDIVRG 69 Query: 55 VATNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAK 112 V T +D ++ L L+ L + + +LR YEL R DVP I+E I++A Sbjct: 70 VGTRCEEIDRVISENLSERWSLDRLDRPMRQILRAGTYELLARPDVPTATIISEYIDVAN 129 Query: 113 SFGAEDSHKFVNGVLDKAAPVIRP 136 +F FVNG+LD A +R Sbjct: 130 AFYDRQEKNFVNGLLDTVAKKLRS 153 >UniRef50_B5GBK3 RNA-binding Sun protein n=1 Tax=Streptomyces sp. SPB74 RepID=B5GBK3_9ACTO Length = 402 Score = 128 bits (323), Expect = 6e-29, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 47/128 (36%), Gaps = 5/128 (3%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQD----VKDVDVLYFRELLAGVATNTAYLDGL 65 R A AL + V L E D EL+ G D + Sbjct: 128 RVLAFDALRAVDERDAYANLVLPALLREAREKGGFDARDAALATELVYGTLRGRGTYDAV 187 Query: 66 MKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNG 125 + + R L E+ VL + ++L + +P A++ +ELA+ + +FVN Sbjct: 188 IAACVDRPLREVDPPVLDVLSLGAHQLL-GTRIPTHAAVSATVELARVVLGDGRSRFVNA 246 Query: 126 VLDKAAPV 133 VL + A Sbjct: 247 VLRRIARN 254 >UniRef50_B0MPP7 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MPP7_9FIRM Length = 439 Score = 128 bits (322), Expect = 6e-29, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 49/135 (36%), Gaps = 5/135 (3%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK AR+ + L + + D D + L GV Sbjct: 1 MKT-----ARQITLDLLIRMDTQGAYSNIILDHAFTQNDADRRDKAFSAALFYGVLERRM 55 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD L++ Y +++ +LR+ Y+L + VP A+NE++ L + + Sbjct: 56 TLDYLIRYYSGIEFDKIKTAVVEILRMGFYQLLFMNSVPDSAAVNESVALCDYCNSTKAK 115 Query: 121 KFVNGVLDKAAPVIR 135 +VN +L + Sbjct: 116 GYVNAILRTFLRNEK 130 >UniRef50_B7APZ1 Putative uncharacterized protein n=1 Tax=Bacteroides pectinophilus ATCC 43243 RepID=B7APZ1_9BACE Length = 374 Score = 128 bits (322), Expect = 6e-29, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 50/126 (39%), Gaps = 1/126 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNTAYLDGLMKP 68 R + L + + Q L++ + + L G + D L+ Sbjct: 11 RAVVLDILLENDKNPGHSNLITGQALSKFQYLPKSQRAFISRLAEGTIERSIEEDWLIDH 70 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 S +++ V + ++R++ Y+L VP NEA++LA+ G FVNGVL Sbjct: 71 VSSVSTKKMKPVIRNIMRMSAYQLKYMDSVPVSAVCNEAVKLARKRGFSSLTGFVNGVLR 130 Query: 129 KAAPVI 134 A I Sbjct: 131 SLARDI 136 >UniRef50_D1N6Z8 NusB antitermination factor n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N6Z8_9BACT Length = 170 Score = 128 bits (322), Expect = 7e-29, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 15/153 (9%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADV----------EYQFLAEQDVKDVDVLYFREL 51 KP A+R RE A+Q L+ + + E L E + Y ++L Sbjct: 13 KPHAKRLGRELAMQYLFRCDMRDELPSAATFGQFFEEVREQHALQENRLARKGREYAQQL 72 Query: 52 LAGVATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIEL 110 VA + +D ++ + L V++ ++RIA+ E+ +VP V+I+EA+E+ Sbjct: 73 YNNVAVHKEEIDATIQARSENWEWDRLSVVDRNIMRIAVAEMLYEEEVPPVVSIDEAVEI 132 Query: 111 AKSFGAEDSHKFVNGVL----DKAAPVIRPNKK 139 A+ + E + F+NGVL D R +K+ Sbjct: 133 ARDYSGEAAGNFINGVLNGVKDTLKRSPRGDKR 165 >UniRef50_D1B3U2 Transcription antitermination factor NusB n=3 Tax=Campylobacterales RepID=D1B3U2_SULD5 Length = 136 Score = 128 bits (322), Expect = 7e-29, Method: Composition-based stats. Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 2/134 (1%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 A R +ARE + LY+ + I + E+ +++ + L GV + + +D Sbjct: 2 ATRHQARESIITLLYAEDIGNAGIDKFIDELFEEKKIRNQQKEFALGLYQGVKAHLSVID 61 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 + +L L E+G +E+A+LR+ YE+ S++ V INEAIELAK E S KF Sbjct: 62 EAINRHLKEWNLSEIGMLERAILRLGGYEILY-SELDNAVVINEAIELAKKLCNETSPKF 120 Query: 123 VNGVLDKAAPVIRP 136 +NGVLD Sbjct: 121 INGVLDAICKEGEA 134 >UniRef50_B0MQ18 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MQ18_9FIRM Length = 143 Score = 128 bits (322), Expect = 7e-29, Method: Composition-based stats. Identities = 40/139 (28%), Positives = 71/139 (51%), Gaps = 3/139 (2%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 + R RE A+ L+ +L+ + ++ +++ +L GVA + Sbjct: 4 RKLTRHEMREAALLILFQMKLNPETLDEILEDCKESFEMEYNSQS--VKLAKGVAEHEDE 61 Query: 62 LDGLMKPYL-SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 L+G+++ Y SR L+ + + A+++IALYE+ VP KVAINEAIE AK + + Sbjct: 62 LNGIIESYSPSRKLDRISYINLAIMKIALYEMKYCPSVPDKVAINEAIEFAKEYADKTDV 121 Query: 121 KFVNGVLDKAAPVIRPNKK 139 +F+NGVL+ ++ Sbjct: 122 RFINGVLNSYYKDNPTKEQ 140 >UniRef50_C9LUP3 Transcription antitermination factor NusB n=2 Tax=Selenomonas RepID=C9LUP3_9FIRM Length = 160 Score = 128 bits (322), Expect = 7e-29, Method: Composition-based stats. Identities = 45/140 (32%), Positives = 70/140 (50%), Gaps = 11/140 (7%) Query: 4 AARRRARECAVQALYSWQLSQNDIAD--------VEYQFLAEQDVK-DVDVLYFRELLAG 54 +RR+ARE A+Q L+ +L+ A + E V+ D Y L+ G Sbjct: 21 MSRRQAREAALQTLFQLELNPPSEAASEEACQMWALDAAVEEMPVETKRDYSYAASLVRG 80 Query: 55 VATNTAYLDGLMKPYL-SRLLEELGQVEKAVLRIALYELSK-RSDVPYKVAINEAIELAK 112 + A +D + L+ + V++ ++RIALYE+ V +AINEA+ELAK Sbjct: 81 TREHLAAIDEEIAASTHDWKLDRMTGVDRNIVRIALYEMKYGAEKVDVGIAINEAVELAK 140 Query: 113 SFGAEDSHKFVNGVLDKAAP 132 FG +DS ++VNG+L A Sbjct: 141 KFGTDDSSRYVNGILGGLAR 160 >UniRef50_B0PBD5 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PBD5_9FIRM Length = 161 Score = 128 bits (322), Expect = 7e-29, Method: Composition-based stats. Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 6/140 (4%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK R +RE A ++ I ++ Q ++++ D Y L + V N Sbjct: 1 MK---RSESREQAFMLIFERSFKDESIDEIIEQAAIGRNLQVDD--YAYRLASDVCGNLP 55 Query: 61 YLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDS 119 +LD + Y + + + +V ++LR++L+E+ VP +INEA+ELAK +G +D Sbjct: 56 WLDEAIASYSKKWKINRMSRVALSILRLSLWEIDHVDTVPAGASINEAVELAKKYGNDDD 115 Query: 120 HKFVNGVLDKAAPVIRPNKK 139 FVNGVL +++ Sbjct: 116 FSFVNGVLGAYVRRKDSSEQ 135 >UniRef50_C3XMJ2 Transcription termination protein n=1 Tax=Helicobacter winghamensis ATCC BAA-430 RepID=C3XMJ2_9HELI Length = 199 Score = 128 bits (322), Expect = 7e-29, Method: Composition-based stats. Identities = 41/131 (31%), Positives = 68/131 (51%), Gaps = 2/131 (1%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 A R AR Q LY++ + I+ + L+E +K+ + + L GV + +D Sbjct: 2 ATRTHARVAVAQLLYAYGSGNDGISKFVEEILSEHKIKNAQNEFAKTLFNGVLEHLEEVD 61 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 +K + E +G +E+A+LR+ YE+ S + + INEA+E+ K+F E S KF Sbjct: 62 LRIKHQIKNWDFERIGDMERAILRLGAYEIIF-SGMDKAIVINEALEITKNFSNETSTKF 120 Query: 123 VNGVLDKAAPV 133 +NG+LD A Sbjct: 121 INGILDGIAKN 131 >UniRef50_Q7A601 SA1060 protein n=63 Tax=Staphylococcaceae RepID=Q7A601_STAAN Length = 461 Score = 128 bits (322), Expect = 7e-29, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 3/128 (2%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY 69 R A + + L+E ++ +D F E++ G LD +KP+ Sbjct: 32 RSLAFDTIQDILNEGAYSNLRINEVLSENELNAMDKALFTEIVYGTVKRKYTLDFYLKPF 91 Query: 70 LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129 + ++ + +L +++Y+ VP INEA+E+AK G + VNG+L Sbjct: 92 VK---TKIKAWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRT 148 Query: 130 AAPVIRPN 137 P+ Sbjct: 149 MMRSDLPD 156 >UniRef50_UPI00019779AE transcription antitermination protein NusB n=1 Tax=Helicobacter cinaedi CCUG 18818 RepID=UPI00019779AE Length = 165 Score = 128 bits (322), Expect = 7e-29, Method: Composition-based stats. Identities = 53/138 (38%), Positives = 73/138 (52%), Gaps = 3/138 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 A R +ARE + LY++ L DI D+ E+ +K+ + LL G TN +D Sbjct: 2 ATRTQAREAVIGMLYAYDLGNKDILDIARSMFEEKKIKNKQQDFAFLLLQGAITNLQSID 61 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAED-SHK 121 + PYL LG +EKAVLR+ YE+ +D V INEAIEL K +G ED + + Sbjct: 62 EAIIPYLKEWDFSRLGGMEKAVLRLGAYEILY-TDTDSPVVINEAIELGKMYGGEDNTPR 120 Query: 122 FVNGVLDKAAPVIRPNKK 139 F+NGVLD + R K Sbjct: 121 FLNGVLDALSKAHRQMSK 138 >UniRef50_B4WR53 Ribosomal RNA small subunit methyltransferase B n=4 Tax=Cyanobacteria RepID=B4WR53_9SYNE Length = 491 Score = 127 bits (321), Expect = 8e-29, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 52/143 (36%), Gaps = 9/143 (6%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQD--------VKDVDVLYFRELLA 53 K A + AR+ A +AL + V + L + D EL+ Sbjct: 31 KTAKPKTARQIAFEALRAIDQ-GAFADVVIDRKLKGTQTGTQLGIQLSSQDKGLVTELVY 89 Query: 54 GVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKS 113 G LD L+ + R + + +LR+ Y+L VP ++ ++LAKS Sbjct: 90 GSVRRRRTLDALIDQFGKRPASKQHRDLLQILRLGFYQLRYLDHVPVHAVVDTTVQLAKS 149 Query: 114 FGAEDSHKFVNGVLDKAAPVIRP 136 VN +L + A P Sbjct: 150 QRLGKLSGVVNAMLRQYAREAMP 172 >UniRef50_C7MCY2 tRNA/rRNA cytosine-C5-methylase n=2 Tax=Micrococcineae RepID=C7MCY2_BRAFD Length = 551 Score = 127 bits (321), Expect = 9e-29, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 5/136 (3%) Query: 2 KPAARRR----ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVAT 57 +PA R R +R+ A++ L + + V + L V D + EL G Sbjct: 54 RPAERSRRSTPSRQVALEGLRLVREEDSYANLVLPRLLRSHRVSGRDAAFTTELFYGSLR 113 Query: 58 NTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 LD ++ + R LEE+ + VLR+ Y+L V A +E + LA++ Sbjct: 114 AQGRLDAILTACVDRPLEEVDPALRDVLRLGAYQLLDM-SVAPHAATSETVALARAEVGA 172 Query: 118 DSHKFVNGVLDKAAPV 133 FVN VL + Sbjct: 173 GGASFVNAVLRRVGEK 188 >UniRef50_A7HX88 NusB antitermination factor n=1 Tax=Parvibaculum lavamentivorans DS-1 RepID=A7HX88_PARL1 Length = 171 Score = 127 bits (321), Expect = 9e-29, Method: Composition-based stats. Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 10/136 (7%) Query: 12 CAVQALYSWQLSQNDIADVEYQFLA--------EQDVKDVDVLYFRELLAGVATNTAYLD 63 AVQALY ++ + +V +F+ + ++ D ++F +++ GV LD Sbjct: 25 FAVQALYQMDIAATPLDEVVEEFVEHRLEEPEGDNEIFAADKVHFEDVVRGVVREQRELD 84 Query: 64 GLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 + L+ L L +A+LR YEL + DVP KV INE +E+A +F D Sbjct: 85 VQVNSALAKGWSLARLDATLRAILRCGTYELRRCKDVPLKVVINEYVEIAHAFFEGDEPG 144 Query: 122 FVNGVLDKAAPVIRPN 137 VN VLD+ IR Sbjct: 145 VVNAVLDRLGRDIRAG 160 >UniRef50_Q47QY5 N utilization substance protein B homolog n=21 Tax=Actinomycetales RepID=NUSB_THEFY Length = 142 Score = 127 bits (320), Expect = 1e-28, Method: Composition-based stats. Identities = 38/133 (28%), Positives = 70/133 (52%), Gaps = 3/133 (2%) Query: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61 + +R +AR AV+ LY ++ +++V + A+ + + +L V + A Sbjct: 6 RRGSRHKARVRAVEILYEAEVRGVPVSEVIERRRAQTE--PPINEFTEQLATRVDEHRAR 63 Query: 62 LDGLMKPY-LSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D L++ Y + L+ + V++ +LRI +YEL D+P VAI EA+ +AK ++S Sbjct: 64 IDELLETYAIGWTLDRMPVVDRNILRIGVYELLWADDIPDGVAIAEAVAMAKELSTDESP 123 Query: 121 KFVNGVLDKAAPV 133 FVNG+L + Sbjct: 124 VFVNGLLSRLMEK 136 >UniRef50_D0WFZ4 Transcription antitermination factor NusB n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WFZ4_9ACTN Length = 218 Score = 126 bits (319), Expect = 1e-28, Method: Composition-based stats. Identities = 40/142 (28%), Positives = 70/142 (49%), Gaps = 10/142 (7%) Query: 1 MKPAARRR---ARECAVQALYSWQLSQNDIADVEYQ--FLAEQDVKDVDVLYFRELLAGV 55 M A R+ R A LY ++ + + + E + Y R LL G Sbjct: 1 MGKAKRQEHTFGRRSAASVLYQSEIIGKPVDRILEEGDIPEEAGLN----EYGRLLLLGF 56 Query: 56 ATNTAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 + + A +D ++ + + + V++ +LRI +YE+ VP V+INEA+E+AK F Sbjct: 57 SAHRAEIDRIISERSANWAVNRMPMVDRELLRITVYEMKYVDAVPIPVSINEAVEIAKEF 116 Query: 115 GAEDSHKFVNGVLDKAAPVIRP 136 G +DS++F+NG+L + A + Sbjct: 117 GGDDSYRFINGLLGRVARDLDE 138 >UniRef50_Q0AXL7 Putative uncharacterized protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AXL7_SYNWW Length = 456 Score = 126 bits (319), Expect = 2e-28, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 53/131 (40%) Query: 8 RARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 +AR A + +Y + L D+ D E++ G +LD +++ Sbjct: 11 KARIMAAEIVYEVMERGAFANLALAKALRNSDLSAADRHLLTEIVNGTVRMIKHLDWVLE 70 Query: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 +L +++ ++LR ALY+L + VP +N+A+E+++ N VL Sbjct: 71 LFLHSPIKKQNPYLLSILRTALYQLMFLAKVPDYALVNDAVEISRQKMGAKMAGVSNAVL 130 Query: 128 DKAAPVIRPNK 138 + K Sbjct: 131 RNIIRKLDKIK 141 >UniRef50_Q836W8 N utilization substance protein B homolog n=39 Tax=Lactobacillales RepID=NUSB_ENTFA Length = 154 Score = 126 bits (318), Expect = 2e-28, Method: Composition-based stats. Identities = 46/143 (32%), Positives = 73/143 (51%), Gaps = 10/143 (6%) Query: 5 ARRRARECAVQALYSWQLS-QNDIADVEYQFLA-------EQDVKDVDVLYFRELLAGVA 56 R RE A+QAL+ + D LA +D +D+ Y L+ GV Sbjct: 11 TRHEIREKALQALFPLDFNADLTKQDAIDYALAYDNREIVSEDGEDLVPTYLDLLVGGVC 70 Query: 57 TNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF 114 + A LD ++ +L + ++ L +++ +LR+A++E+ SDVP VA+NEA+EL+K + Sbjct: 71 SRKAELDEVITNHLGNNWSMQRLAKIDIVILRLAIFEMLYVSDVPNIVALNEAVELSKKY 130 Query: 115 GAEDSHKFVNGVLDKAAPVIRPN 137 + S KFVNGVL I Sbjct: 131 SDDRSRKFVNGVLSNVMKEIDSE 153 >UniRef50_C1I679 NusB antitermination factor n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I679_9CLOT Length = 134 Score = 126 bits (318), Expect = 2e-28, Method: Composition-based stats. Identities = 49/134 (36%), Positives = 80/134 (59%), Gaps = 3/134 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQD--VKDVDVLYFRELLAGVATNTAY 61 R+R+RE A++ L+ LS+N + + F+ + + +K +D+ Y + +LA V N Sbjct: 1 MNRKRSREIAMELLFGMTLSKNTLEETIETFIEDYEMNLKTIDLEYIKGILAKVEENITV 60 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D ++ L+ ++ + +V ++LR+A+ E+ DVP KVAINEAIEL K + E S Sbjct: 61 IDQKIEEALTNWKIDRVSKVNISILRLAIAEMLYVEDVPEKVAINEAIELTKKYSDEKSV 120 Query: 121 KFVNGVLDKAAPVI 134 FVNGVLDKA + Sbjct: 121 SFVNGVLDKAFKSL 134 >UniRef50_B0CL95 N utilization substance protein B homolog n=42 Tax=Alphaproteobacteria RepID=NUSB_BRUSI Length = 171 Score = 126 bits (318), Expect = 2e-28, Method: Composition-based stats. Identities = 47/146 (32%), Positives = 71/146 (48%), Gaps = 10/146 (6%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQF--------LAEQDVKDVDVLYFRELLAGV 55 R AR A QALY ++ + +V ++ + D D +FR ++AGV Sbjct: 18 NKRGVARLAAAQALYQMDVAGTGVMEVVAEYEAFRLGKEVDGTQYLDADPQWFRAIVAGV 77 Query: 56 ATNTAYLDGLMKPYL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKS 113 + LD ++ L L L +A+LR +EL R DVP V ++E +++AK+ Sbjct: 78 VEDQLKLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELKARKDVPTAVIVSEYVDIAKA 137 Query: 114 FGAEDSHKFVNGVLDKAAPVIRPNKK 139 F ED K VN VLD+ A VIR + Sbjct: 138 FYTEDEPKLVNAVLDRLALVIRGESR 163 >UniRef50_UPI0001BC34B4 sun protein n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=UPI0001BC34B4 Length = 443 Score = 126 bits (318), Expect = 2e-28, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 49/130 (37%), Gaps = 1/130 (0%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNTAYLDGLMKP 68 R + AL V + L + + ++D + + G LD ++ Sbjct: 8 RNIILDALIEINEKDRFTHIVLPEVLKKYQYLDNIDRSFISRTILGTVERKITLDYIINL 67 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 + + ++ V + +LR++ Y+L V NEA+ L+ G FVNGVL Sbjct: 68 FSKTPVNKMKPVIRNILRMSTYQLIYMEGVKDFAVCNEAVRLSVKKGFTALKGFVNGVLR 127 Query: 129 KAAPVIRPNK 138 A + Sbjct: 128 TIAREKNKIE 137 >UniRef50_C5NYN0 Ribosomal RNA small subunit methyltransferase B n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NYN0_9BACL Length = 441 Score = 126 bits (318), Expect = 2e-28, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 3/125 (2%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR A + LY+ ++ + V++ D + E++ G N YL+ ++K Sbjct: 6 ARHIAYEVLYTIIQEDGYSNITLNKYFNQYKVEEQDKRFISEVVYGSIKNKLYLEHILKS 65 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 Y + K +L +++Y+L P I+EA++L K + KFVNG+L Sbjct: 66 YSKG---RVKPKVKVILLMSIYQLLYMDKTPNFAVIDEAVKLGKKIAGNITGKFVNGILR 122 Query: 129 KAAPV 133 Sbjct: 123 NIERN 127 >UniRef50_B0NZC1 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0NZC1_9CLOT Length = 167 Score = 126 bits (318), Expect = 2e-28, Method: Composition-based stats. Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 6/140 (4%) Query: 1 MKPAARRRARECAVQALYSWQL--SQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATN 58 MK R RE + L+ + + VE F +++ + E + + Sbjct: 31 MK---RSEVREHIFRILFCVEFCEKEEFEDQVELYFHGHENINEKTQKEITEKTENLIEH 87 Query: 59 TAYLDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117 +D + + + LE LG+ E ++LR+A YE+ VP KVAINEA+ELAK + E Sbjct: 88 LDEIDEQISAHTNAWNLERLGKAELSILRLATYEILLDEQVPRKVAINEAVELAKKYCNE 147 Query: 118 DSHKFVNGVLDKAAPVIRPN 137 + F+NGVL K + Sbjct: 148 KAAPFINGVLSKIGQDMDEE 167 >UniRef50_B0SB76 N utilization substance protein B homolog n=6 Tax=Leptospira RepID=NUSB_LEPBA Length = 140 Score = 126 bits (318), Expect = 2e-28, Method: Composition-based stats. Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 1/131 (0%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 ++R R R A+ LY L D ++ + + Y L+ GV N +D Sbjct: 2 SSRHRGRSLALMCLYQIDLVGTDPDRAMKFDWYDKKITREEKDYAVFLVKGVVENRKAID 61 Query: 64 GLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 L+K Y L + V + +LR+++ L K + V INEA+EL K F E+S +F Sbjct: 62 TLIKKYSENWELSRISVVNRCILRLSILSLQKEPFLAAPVVINEAVELTKEFETEESAQF 121 Query: 123 VNGVLDKAAPV 133 +NG+LD Sbjct: 122 INGLLDAFYKK 132 >UniRef50_A6LU43 N utilization substance protein B homolog n=6 Tax=Clostridium RepID=NUSB_CLOB8 Length = 133 Score = 126 bits (317), Expect = 2e-28, Method: Composition-based stats. Identities = 47/133 (35%), Positives = 78/133 (58%), Gaps = 3/133 (2%) Query: 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLA--EQDVKDVDVLYFRELLAGVATNTAY 61 R+ +RE A++ L+ LS++ + D F+ E D+K++D+ Y +++L GV N Sbjct: 1 MNRKLSREKAMELLFGMTLSKDTMEDAVEAFVENYEGDIKEIDLTYVKQVLIGVNNNKEA 60 Query: 62 LDGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D +++ L +E + +V ++LRIA YEL +VP VAINEA+E+ + + E S Sbjct: 61 IDKVIQENLHNWKIERISKVNLSILRIATYELLYDKEVPRGVAINEALEITRRYSDEKSV 120 Query: 121 KFVNGVLDKAAPV 133 F+NGVLDK Sbjct: 121 SFINGVLDKIKQD 133 >UniRef50_B0PFT6 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PFT6_9FIRM Length = 450 Score = 126 bits (317), Expect = 3e-28, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 51/132 (38%), Gaps = 4/132 (3%) Query: 1 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 60 MK AR A QAL + + + + + + + L V Sbjct: 25 MKK----DARYTAAQALLRMESAGAYSNLTIDSLIEKNGLDAREGAFAAALFYTVLERRL 80 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 +D ++ Y +R L L + LR+ + +L V A++E++ L ++ G + Sbjct: 81 TIDHVLAAYCARGLASLSKPVLQTLRLGVCQLVWMDGVDDYAAVSESVNLTRALGCAKAS 140 Query: 121 KFVNGVLDKAAP 132 FVNGVL Sbjct: 141 GFVNGVLRAFLR 152 >UniRef50_Q2LRX5 16S rRNA m(5)C 967 methyltransferase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LRX5_SYNAS Length = 471 Score = 126 bits (317), Expect = 3e-28, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 49/130 (37%), Gaps = 2/130 (1%) Query: 10 RECAVQALYSWQLSQNDIADVEYQFLAEQDVKDV-DVLYFRELLAGVATNTAYLDGLMKP 68 R AV+ L + + FL + + D L+ G LD +++ Sbjct: 25 RSLAVEILDRIDTTGAFAEPLLDAFLRDHLLDSAPDRHLLTSLVYGTLRMRGRLDWIIQQ 84 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 + + +LR ALY+ +P ++EA+ELAK K VN +L Sbjct: 85 LYQGRFSSMQGGIRNILRTALYQFLFMERIPAFALVDEAVELAKLRYPGRE-KLVNALLR 143 Query: 129 KAAPVIRPNK 138 A + N+ Sbjct: 144 NAVRKVSANE 153 >UniRef50_Q1IIS1 Sun protein n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IIS1_ACIBL Length = 432 Score = 126 bits (317), Expect = 3e-28, Method: Composition-based stats. Identities = 33/128 (25%), Positives = 54/128 (42%), Gaps = 1/128 (0%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 +R A L + Q +++ + D+ D EL+ G + LD L+ Sbjct: 6 SRATAFDILLRVERDQAFASELLHSDR-LNDLSAPDRGLATELVMGTLRWQSTLDALVAT 64 Query: 69 YLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLD 128 S+ L +L LR+A Y+L +P A+NE++EL K + F N VL Sbjct: 65 QSSQPLRKLDIEVLIALRLAAYQLQFLDRIPANAAVNESVELVKRARKRSAVPFANAVLR 124 Query: 129 KAAPVIRP 136 K + + R Sbjct: 125 KISKLPRE 132 >UniRef50_D0WMY6 Ribosomal RNA small subunit methyltransferase B n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WMY6_9ACTO Length = 534 Score = 126 bits (317), Expect = 3e-28, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 2/126 (1%) Query: 9 ARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 AR A + L + V +A + +D Y L G D ++ Sbjct: 69 ARLVAFEVLRAVDEDDAYANLVLPVEIARAGLNKLDAAYATNLCYGTLRMRGRWDAIISR 128 Query: 69 YLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVL 127 R + ++ +LR+ +L + P AI+E + +A++F + + FVN VL Sbjct: 129 CAKGRRIYDIDPPVLDLLRMGCEQLLAM-ETPPHAAIHETVVIARNFFGQGTGGFVNAVL 187 Query: 128 DKAAPV 133 + + Sbjct: 188 RRISEK 193 >UniRef50_Q0ABQ3 N utilization substance protein B homolog n=2 Tax=Ectothiorhodospiraceae RepID=NUSB_ALHEH Length = 178 Score = 126 bits (317), Expect = 3e-28, Method: Composition-based stats. Identities = 54/134 (40%), Positives = 73/134 (54%), Gaps = 17/134 (12%) Query: 18 YSWQLSQNDIADVEYQFLA-----------------EQDVKDVDVLYFRELLAGVATNTA 60 Y WQ++ D+ +E Q L +D YFR LL GV Sbjct: 29 YQWQMTGQDLGAIEAQHLEIDPEEPPVEAGDDEHYPRYPHDGLDRPYFRALLHGVPARLN 88 Query: 61 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 120 LD ++P L R L L +EKA+LR+ +ELS+R D P++V INEA+ LAK FGAE SH Sbjct: 89 DLDQALEPLLDRPLRTLDPLEKALLRLGAWELSERMDTPWRVIINEAVNLAKRFGAEQSH 148 Query: 121 KFVNGVLDKAAPVI 134 +++NGVLDK A + Sbjct: 149 RYINGVLDKLARGL 162 >UniRef50_B1ZVQ6 NusB antitermination factor n=3 Tax=Verrucomicrobia RepID=B1ZVQ6_OPITP Length = 147 Score = 126 bits (317), Expect = 3e-28, Method: Composition-based stats. Identities = 39/141 (27%), Positives = 74/141 (52%), Gaps = 6/141 (4%) Query: 4 AARRRARECAVQALYSWQLS-QNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 A RR R A+Q L++W ++ ++A+ F + + EL+ GV ++ + Sbjct: 7 AQRRDGRVAALQYLFAWSMNRPRNLAEDLRVFFENMEQPRDHYAFGEELIHGVIEHSDDI 66 Query: 63 DGLMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 D +K + + +++ +LR+A++E+ R D+P V+INEAI+L+K F D+ + Sbjct: 67 DARIKGLAHNWEFDRIAKIDLTILRLAIFEILHRKDIPPVVSINEAIDLSKQFSNADAKR 126 Query: 122 FVNGVLDK----AAPVIRPNK 138 F+NG+LD+ R + Sbjct: 127 FINGILDRLKDQVGRDARKAE 147 >UniRef50_D2EIA0 Transcription antitermination factor NusB n=1 Tax=Pediococcus acidilactici 7_4 RepID=D2EIA0_PEDAC Length = 134 Score = 125 bits (316), Expect = 3e-28, Method: Composition-based stats. Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 4/132 (3%) Query: 5 ARRRARECAVQALYSWQLS-QNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD 63 R + RE A + +++ ++ D +++ Q L E DV + L+ GV N + ++ Sbjct: 4 NRHQMRESAFKMIFAQSVNPDADPEELKKQVLEEFHETDVADPFLDNLVTGVQENVSSIN 63 Query: 64 GLMKPYLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121 + L + L ++ +L+I YE+ ++VP VAINEA+ELAK + E + K Sbjct: 64 ETIGKELKAGWTVNRLANPDRVILQIGTYEIKH-TEVPNNVAINEALELAKKYTDEKARK 122 Query: 122 FVNGVLDKAAPV 133 F+NGVL A Sbjct: 123 FINGVLSNVAKD 134 >UniRef50_D1KDZ6 Transcription termination factor n=1 Tax=uncultured SUP05 cluster bacterium RepID=D1KDZ6_9GAMM Length = 142 Score = 125 bits (316), Expect = 3e-28, Method: Composition-based stats. Identities = 53/136 (38%), Positives = 82/136 (60%), Gaps = 1/136 (0%) Query: 3 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYL 62 ++R+RE VQA+Y + +S ++ +E QFL +++ + +F L + N L Sbjct: 4 KTPKQRSRERVVQAVYQYLVSGGEVLQIEQQFLNQKE-GKISKAFFSNLFINILKNRIEL 62 Query: 63 DGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKF 122 D L+ P +SR +ELG VE AVL + +YEL +VPYKV INEA+E+AK +GAE + K Sbjct: 63 DELIAPTISRETDELGSVEHAVLYLGVYELQNSIEVPYKVVINEALEIAKLYGAEGAFKL 122 Query: 123 VNGVLDKAAPVIRPNK 138 +N LD+ A +R + Sbjct: 123 INSSLDQLAKDLRELE 138 >UniRef50_UPI0001B583AE RNA-binding Sun protein n=2 Tax=Actinomycetales RepID=UPI0001B583AE Length = 437 Score = 125 bits (316), Expect = 4e-28, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 52/145 (35%), Gaps = 16/145 (11%) Query: 4 AARRRAR-----------ECAVQALYSWQLSQNDIADVEYQFLAEQD----VKDVDVLYF 48 ++RRR R A AL + V L E D Sbjct: 12 SSRRRGRPHRAPRKDPVRVLAFDALRAVDERDAYANLVLPALLREAREKGGFDARDAALA 71 Query: 49 RELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAI 108 EL+ G D ++ + R L E+ VL + ++L + +P A++ + Sbjct: 72 TELVYGTLRGRGTYDAIIAACVDRPLREVDPPVLDVLSLGAHQLL-GTRIPTHAAVSATV 130 Query: 109 ELAKSFGAEDSHKFVNGVLDKAAPV 133 ELA+ + +FVN VL + + Sbjct: 131 ELARVVLGDGRSRFVNAVLRRISRN 155 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.312 0.188 0.567 Lambda K H 0.267 0.0578 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,149,573,648 Number of Sequences: 3077464 Number of extensions: 59903705 Number of successful extensions: 158590 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 1508 Number of HSP's successfully gapped in prelim test: 243 Number of HSP's that attempted gapping in prelim test: 154909 Number of HSP's gapped (non-prelim): 1891 length of query: 139 length of database: 1,040,396,356 effective HSP length: 103 effective length of query: 36 effective length of database: 723,417,564 effective search space: 26043032304 effective search space used: 26043032304 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.9 bits) S2: 88 (38.0 bits)