49 c3csgA_ Probab=99.83   E-value=3.6e-18  Score=121.70  Aligned_columns=262  Identities=13%

Q ss_pred             EEEEEECCCC-HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCCCCC
Q ss_conf             7999963764-899999999999763211798359999408549999999729977299966967999998539654564
Q batch____        23 QLLNVSYDPT-RELYEQYNKAFSAHWKQQTGDNVVIRQSHGGSGKQATSVINGIEADVVTLALAYDVDAIAERGRIDKEW  101 (329)
Q Consensus        23 ~l~~~~~~~~-~~~~~~i~~~Fek~~~~~tg~~V~v~~~~~~s~~~~~~~~~g~~~Dv~~~~~~~~~~~l~~~g~~~~~~  101 (329)
                      +|++.+.+.. .+.+.++++.|||    +||++|+++...+-..++..++..|..+||+.. +..++..+.+.|++.+..
T Consensus         1 ~l~vW~~~~~~~~~~~e~~~~Fek----~tGIkV~~~~~~d~~~kl~~~~asG~~PDI~~~-~~~~~~~~~~~G~L~~L~   75 (458)
T c3csgA_           1 KLVIWINGDKGYNGLAEVGKKFEK----DTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFW-AHDRFGGYAQSGLLAEIT   75 (458)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHH----HHCCCEEEECCTTHHHHHHHHHTTTCSCSEEEE-EHHHHHHHHHTTCBCCCC
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHH----CCCCEEEEEECCCHHHHHHHHHHCCCCCCEEEE-CCHHHHHHHHCCCEECCC
T ss_conf             589997085357899999998720----379689998621079999999838999719998-721278899789821378


Q ss_pred             CCCCC------------------CCCEEEEEEEEEEECCCC-CCCCCCHHHHCC--CCCCEEEECCCCCCCCHHHHHHHH
Q ss_conf             00013------------------441145510478750766-568883466303--454135413566763058999999
Q batch____       102 IKRLP------------------DNSAPYTSTIVFLVRKGN-PKQIHDWNDLIK--PGVSVITPNPKSSGGARWNYLAAW  160 (329)
Q Consensus       102 ~~~~~------------------~~~~~~~~~~~~~~~~~~-~~~~~~w~dL~~--~~~k~~~~~~~~~~~g~~~~~~~~  160 (329)
                      .....                  +..++..+..+++||++. ...|++|++|.+  ..++.....+...+..........
T Consensus        76 ~~~~~~d~~~~~~~~~~~~dGk~YgiP~~~~~~~l~YNkdlf~e~P~Twdel~~~a~klk~~g~~~~~~~~~~~~~~~~~  155 (458)
T c3csgA_          76 PDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPL  155 (458)
T ss_dssp             CCHHHHTTBCHHHHHTTEETTEECSEEEEEECCEEEEETTTCSSCCSBGGGHHHHHHHHHTTTCEEECCCTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHEEECCEEEEEECCCCEEEEEEEHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHH
T ss_conf             10435653025656307788979997527714799980666121236888999999998857983067336420579999


Q ss_pred             HHHHCC-----------------CCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHCC
Q ss_conf             975014-----------------465202489999999731220255430478999604750699861248998875227
Q batch____       161 GYALHH-----------------NNNDQAKAQDFVRALYKNVEVLDSGARGSTNTFVERGIGDVLIAWENEALLAANELG  223 (329)
Q Consensus       161 ~~~~~~-----------------~~~~~~~~~~~~~~l~~n~~~~~~~~~~~~~~~v~~G~~~~~~~~~~~a~~~~~~~~  223 (329)
                      ....+.                 +......+.+++.+|.++...............+..|+..+.+.+............
T Consensus       156 ~~~~gg~~~~~~~~~~~~~~~~l~sp~~~~al~~~~~l~~~g~~~~~~~~~~~~~~F~~G~~am~~~g~w~~~~~~~~~~  235 (458)
T c3csgA_         156 IAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKV  235 (458)
T ss_dssp             HHHTTCEEEEECSSSEEEEEEESSSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHHTC
T ss_pred             HHHHCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCEEEEEECHHHHHHHHCCCC
T ss_conf             99856420012685234566343899999999999999970898988897789899864974599845033556741798


Q ss_pred             CCCEEEECCCCC-CCCCCCEEEEEECCCCCCCHHHHHHHHH-HHCCHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf             873488606778-7324755887310026799899999999-97598999999980991389435132
Q batch____       224 KDKFEIVTPSES-ILAEPTVSVVDKVVEKKGTKEVAEAYLK-YLYSPEGQEIAAKNYYRPRDAEVAKK  289 (329)
Q Consensus       224 ~~~~~~v~p~~~-~~~~~~~~~~~~i~k~a~~~eaA~~Fi~-fllS~e~Q~i~~~~G~~Pv~~~v~~~  289 (329)
                      ...+..+|...+ ...........+|.++++|+|+|++||+ |+.|+|+|+.+.+.+-.|.......+
T Consensus       236 ~~~v~~~P~~~g~~~~~~~g~~~~~I~~~SknkeaA~~Fl~~~~~s~e~~~~~~~~~~~~~~~~~~~~  303 (458)
T c3csgA_         236 NYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYE  303 (458)
T ss_dssp             CEEEECCCEETTEECCCEEEEEEEEEBTTCTTHHHHHHHHHHTTSSHHHHHHHHHHSCCCEESBHHHH
T ss_pred             CCCEEECCCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             61368713568887741678788998289879899999999883998999999731898874210011