90 c3k30B_ Probab=96.70   E-value=0.048  Score=33.14  Aligned_columns=133  Identities=17%

Q ss_pred             HHHHHHHHHCCCCEEEEECCHHHH--------------------HCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECC---
Q ss_conf             999999997599889994587899--------------------549989999999999999663798499998345---
Q batch____        87 LAETRAAIAYGADEVDVVFPYRAL--------------------MAGNEQVGFDLVKACKEACAAANVLLKVIIETG---  143 (259)
Q Consensus        87 ~~E~~~Ai~~GA~EID~Vin~~~l--------------------~~g~~~~v~~ei~~v~~~~~~~~~~lKVIlEt~---  143 (259)
                      ..-++.|.+.|.|-|++-.-.|+|                    ..++.....+=|++|+++|+. +.++.+=+-..   
T Consensus       153 ~~aA~~a~~aG~Dgveih~ahgyl~~~qFlsp~~N~R~D~yGGs~enR~rf~~evi~~ir~~~g~-d~~i~~r~~~~~~~  231 (684)
T c3k30B_         153 RNAVRRSIEAGYDIVYVYGAHGYSGVHHFLSKRYNQRTDEYGGSLENRMRLLRELLEDTLDECAG-RAAVACRITVEEEI  231 (684)
T ss_dssp             HHHHHHHHHHTCSEEEEEECTTCSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHSS-SSEEEEEEESCCCS
T ss_pred             HHHHHHHHHCCCCEEEEECCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC-CCEEEEEECHHHCC
T ss_conf             99999999739988998448874105431265456366765888777376899999999996499-94799984645366


Q ss_pred             --CCCHHHHHHHHHHHHHHCCCCEEEECCCC----------CCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHH
Q ss_conf             --58807999999999995199989847888----------889999899999999854226656304862188889999
Q batch____       144 --ELKDEALIRKASEISIKAGADFIKTSTGK----------VAVNATPESARIMMEVIRDMGVEKTVGFKPAGGVRTAED  211 (259)
Q Consensus       144 --~L~~~e~I~~a~~~a~~aGadFIKTSTGf----------~~~gAT~e~V~lm~~~i~~~~~g~~vgiKaaGGIrt~~~  211 (259)
                        -++.+|.+..+-++  ++|.||+-.|.|-          .+.|...+..+.+++.+       .+-|=++|+|++.++
T Consensus       232 ~~g~~~~e~~~~~~~l--~~~~d~~~vs~g~~~~~~~~~~~~~~~~~~~~~~~ik~~~-------~~pv~~~g~~~~~~~  302 (684)
T c3k30B_         232 DGGITREDIEGVLREL--GELPDLWDFAMGSWEGDSVTSRFAPEGRQEEFVAGLKKLT-------TKPVVGVGRFTSPDA  302 (684)
T ss_dssp             TTSCCHHHHHHHHHHH--TTSSSEEEEECSSHHHHSCCTTTCCTTTTHHHHTTTGGGC-------SSCEEECSCCCCHHH
T ss_pred             CCCCCHHHHHHHHHHH--HCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-------CCCEEEECCCCCHHH
T ss_conf             8888999999999998--5485499973275566555765577654078999999860-------997999878899999


Q ss_pred             HHHHHHHHHHHHHHHHHCCC-CCEEECCHHH
Q ss_conf             99999754322245641589-8733012389
Q batch____       212 AQKYLAIADELFGADWADAR-HYRFGASSLL  241 (259)
Q Consensus       212 a~~~l~l~~~~lG~~~i~ag-a~RiGtSs~~  241 (259)
                      |.+            +|+.| ++-++.+..+
T Consensus       303 a~~------------~l~~g~~D~v~~~R~~  321 (684)
T c3k30B_         303 MVR------------QIKAGILDLIGAARPS  321 (684)
T ss_dssp             HHH------------HHHTTSCSEEEESHHH
T ss_pred             HHH------------HHHCCCCCEEEECCHH
T ss_conf             999------------9978996599983076