260 c3jr2D_ Probab=39.87   E-value=27  Score=15.51  Aligned_columns=120  Identities=18%

Q ss_pred             HHHHHHHHCCCCEEEEECCHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             99999997599889994587899549989999999999999663798499998345588079999999999951999898
Q batch____        88 AETRAAIAYGADEVDVVFPYRALMAGNEQVGFDLVKACKEACAAANVLLKVIIETGELKDEALIRKASEISIKAGADFIK  167 (259)
Q Consensus        88 ~E~~~Ai~~GA~EID~Vin~~~l~~g~~~~v~~ei~~v~~~~~~~~~~lKVIlEt~~L~~~e~I~~a~~~a~~aGadFIK  167 (259)
                      ...+.+.+.|+|-+=+-.--+          .+.+.++.+.++..+  .++++....-++.+.+....+.    |.+++-
T Consensus        69 ~~~~~~~~~g~d~v~vh~~~~----------~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  132 (212)
T c3jr2D_          69 ILSRXAFEAGADWITVSAAAH----------IATIAACKKVADELN--GEIQIEIYGNWTXQDAKAWVDL----GITQAI  132 (212)
T ss_dssp             HHHHHHHHHTCSEEEEETTSC----------HHHHHHHHHHHHHTT--CEEEEECCSSCCHHHHHHHHHT----TCCEEE
T ss_pred             HHHHHHHHCCCCEEEECCCCC----------HHHHHHHHHHHHHCC--CEEEEEECCCCCHHHHHHHHCC----CHHEEE
T ss_conf             999999956998999868899----------889999999997559--8399997159998999998608----920161


Q ss_pred             ECCC----CCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCHHH
Q ss_conf             4788----8889999899999999854226656304862188889999999997543222456415898733012389
Q batch____       168 TSTG----KVAVNATPESARIMMEVIRDMGVEKTVGFKPAGGVRTAEDAQKYLAIADELFGADWADARHYRFGASSLL  241 (259)
Q Consensus       168 TSTG----f~~~gAT~e~V~lm~~~i~~~~~g~~vgiKaaGGIrt~~~a~~~l~l~~~~lG~~~i~aga~RiGtSs~~  241 (259)
                      ...|    +.+..........+++...     ....|-+.||| +.++..            +.+++|++-+=..|++
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~v~gGi-~~~~~~------------~~~~~GaD~iVVGraI  192 (212)
T c3jr2D_         133 YHRSRDAELAGIGWTTDDLDKXRQLSA-----LGIELSITGGI-VPEDIY------------LFEGIKTKTFIAGRAL  192 (212)
T ss_dssp             EECCHHHHHHTCCSCHHHHHHHHHHHH-----HTCEEEEESSC-CGGGGG------------GGTTSCEEEEEESGGG
T ss_pred             EECCCCCCCCCCCCCCHHHHHHHHHHC-----CCCCEEEECCC-CHHHHH------------HHHHCCCCEEEECCHH
T ss_conf             331465310355653001788788622-----78834752688-812279------------9996499899987066