BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (372 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_D0ZEI9 Hydrogenase-1 small subunit n=1 Tax=Edwardsiella... 718 0.0 UniRef50_P12635 Uptake hydrogenase small subunit n=8 Tax=Bacteri... 530 e-149 UniRef50_O33405 Uptake hydrogenase small subunit n=221 Tax=Bacte... 504 e-141 UniRef50_B0TDW1 Uptake [ni/fe] hydrogenase small subunit n=11 Ta... 395 e-108 UniRef50_D1BNB1 Hydrogenase (NiFe) small subunit HydA n=5 Tax=Ve... 374 e-102 UniRef50_B4U5S1 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Hy... 352 1e-95 UniRef50_A7BI79 Ni,Fe-hydrogenase small subunit n=2 Tax=Aquifica... 334 3e-90 UniRef50_C6NZV2 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Pr... 320 4e-86 UniRef50_A8LH34 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Fr... 307 3e-82 UniRef50_B2UPQ9 Hydrogenase (NiFe) small subunit HydA n=8 Tax=Ba... 301 2e-80 UniRef50_P31884 Quinone-reactive Ni/Fe-hydrogenase small chain n... 299 1e-79 UniRef50_C2KSS0 Hydrogenase (Acceptor) n=3 Tax=Bacteria RepID=C2... 298 2e-79 UniRef50_C1DUF2 Quinone-reactive Ni/Fe-hydrogenase small chain (... 296 6e-79 UniRef50_C3XGH6 Ni/Fe-hydrogenase small subunit n=8 Tax=Proteoba... 295 1e-78 UniRef50_A5GFC8 Hydrogenase (NiFe) small subunit HydA n=6 Tax=Pr... 287 4e-76 UniRef50_A6DCC1 NI/FE-HYDROGENASE SMALL SUBUNIT n=1 Tax=Caminiba... 281 3e-74 UniRef50_A7NNQ8 Hydrogenase (NiFe) small subunit HydA n=12 Tax=B... 277 4e-73 UniRef50_P69743 Hydrogenase-2 small chain n=130 Tax=Proteobacter... 259 9e-68 UniRef50_C0QEJ1 HynB n=4 Tax=Deltaproteobacteria RepID=C0QEJ1_DESAH 257 6e-67 UniRef50_Q3ABV6 [Ni/Fe] hydrogenase, small subunit n=3 Tax=Clost... 252 1e-65 UniRef50_Q06173 Periplasmic [NiFe] hydrogenase small subunit 1 n... 250 6e-65 UniRef50_D1U6F3 Hydrogenase (NiFe) small subunit HydA n=1 Tax=De... 250 7e-65 UniRef50_P61429 Periplasmic [NiFe] hydrogenase small subunit 2 n... 247 5e-64 UniRef50_P13061 Periplasmic [NiFe] hydrogenase small subunit n=6... 239 1e-61 UniRef50_Q24X54 Hup-type Ni,Fe-hydrogenase small subunit n=3 Tax... 239 1e-61 UniRef50_Q24VQ2 Ni,Fe-hydrogenase small subunit n=2 Tax=Desulfit... 234 4e-60 UniRef50_Q7VJP5 Putative uncharacterized protein n=3 Tax=Helicob... 232 2e-59 UniRef50_B9KFD7 Quinone-reactive Ni/Fe-hydrogenase, small subuni... 231 2e-59 UniRef50_UPI000197A0EB hypothetical protein HcinC1_01015 n=1 Tax... 228 2e-58 UniRef50_Q31DZ5 Ni,Fe-hydrogenase small subunit n=4 Tax=Proteoba... 227 7e-58 UniRef50_Q5HT18 Hydrogenase, (NiFe)/(NiFeSe) small subunit famil... 221 3e-56 UniRef50_C3XE47 Quinone-reactive Ni/Fe hydrogenase n=1 Tax=Helic... 217 6e-55 UniRef50_C7MNR7 Hydrogenase (NiFe) small subunit HydA n=4 Tax=Co... 215 2e-54 UniRef50_A1HLY8 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Th... 191 4e-47 UniRef50_D2BG44 Ni/Fe hydrogenase, small subunit n=5 Tax=Dehaloc... 190 8e-47 UniRef50_A5D1L0 Ni,Fe-hydrogenase I small subunit n=1 Tax=Peloto... 189 1e-46 UniRef50_P13063 Periplasmic [NiFeSe] hydrogenase small subunit n... 185 2e-45 UniRef50_Q6ARY6 Related to periplasmic [NiFeSe] hydrogenase, sma... 174 6e-42 UniRef50_B1I618 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Cl... 172 2e-41 UniRef50_D2RD73 Hydrogenase (NiFe) small subunit HydA n=3 Tax=Ar... 168 3e-40 UniRef50_A5I2W4 Hydrogenase small subunit n=13 Tax=Firmicutes Re... 168 3e-40 UniRef50_B8FWY3 Hydrogenase (NiFe) small subunit HydA n=2 Tax=De... 167 4e-40 UniRef50_B8HZS9 Hydrogenase (NiFe) small subunit HydA n=3 Tax=Cl... 159 1e-37 UniRef50_C8S958 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Fe... 154 6e-36 UniRef50_B2TM84 [Ni/Fe] hydrogenase, small subunit n=2 Tax=Clost... 152 2e-35 UniRef50_B8D1R7 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Ha... 152 2e-35 UniRef50_Q1NM22 Ni-Fe hydrogenase, small subunit n=3 Tax=Deltapr... 147 5e-34 UniRef50_C1SPM4 Hydrogenase (NiFe) small subunit HydA n=1 Tax=De... 143 8e-33 UniRef50_Q1NRB7 Ni-Fe hydrogenase, small subunit:Twin-arginine t... 140 7e-32 UniRef50_Q0W5V7 F420-nonreducing hydrogenase (Membrane-bound), s... 137 5e-31 UniRef50_D1TP47 Ni Fe-hydrogenase I small subunit-like protein n... 135 3e-30 UniRef50_C8R2V0 Hydrogenase (NiFe) small subunit HydA n=1 Tax=De... 134 6e-30 UniRef50_Q46BG0 Methanophenazine-reducing hydrogenase, small sub... 131 3e-29 UniRef50_B9L9V0 Hydrogenase n=1 Tax=Nautilia profundicola AmH Re... 114 7e-24 UniRef50_D2QHS8 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 112 2e-23 UniRef50_A1RXR6 Hydrogenase (NiFe) small subunit HydA n=3 Tax=Th... 105 3e-21 UniRef50_D2ATL3 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 103 1e-20 UniRef50_A6QAV6 Ni-Fe hydrogenase, small subunit HupS n=3 Tax=Ep... 100 1e-19 UniRef50_A3MWH6 Nickel-iron dehydrogenase small subunit, N-termi... 97 7e-19 UniRef50_C1DUE6 Hydrogenase-2, small subunit n=1 Tax=Sulfurihydr... 97 8e-19 UniRef50_A4YF94 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 97 1e-18 UniRef50_Q79IP7 Regulatory n=46 Tax=Proteobacteria RepID=Q79IP7_... 92 3e-17 UniRef50_D1VJL8 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Ac... 91 7e-17 UniRef50_Q53161 Hydrogen uptake hydrogenase small subunit (Fragm... 91 8e-17 UniRef50_Q0RN51 Uptake hydrogenase small subunit (Hydrogenlyase)... 91 9e-17 UniRef50_B1Y6B2 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 89 2e-16 UniRef50_C0QPV6 Hydrogenase-2, small subunit n=7 Tax=Bacteria Re... 89 3e-16 UniRef50_C0BH99 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Fl... 88 4e-16 UniRef50_Q2W8A6 Ni,Fe-hydrogenase I small subunit n=4 Tax=Proteo... 87 1e-15 UniRef50_D2LGK5 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 83 1e-14 UniRef50_B9L8N0 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 80 8e-14 UniRef50_A2BMI5 NiFe hydrogenase n=1 Tax=Hyperthermus butylicus ... 78 4e-13 UniRef50_Q30QL6 Ni-Fe hydrogenase, small subunit n=2 Tax=Campylo... 77 8e-13 UniRef50_UPI000190EB16 hydrogenase-1 small chain n=1 Tax=Salmone... 70 9e-11 UniRef50_A4YFB4 Nickel-iron dehydrogenase small subunit, N-termi... 62 4e-08 UniRef50_B6YTV9 Coenzyme F420 hydrogenase gamma subunit n=1 Tax=... 45 0.004 UniRef50_C5A2R7 Coenzyme F420 hydrogenase subunit gamma (FrhG) n... 45 0.004 >UniRef50_D0ZEI9 Hydrogenase-1 small subunit n=1 Tax=Edwardsiella tarda EIB202 RepID=D0ZEI9_EDWTE Length = 471 Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/373 (94%), Positives = 364/373 (97%), Gaps = 1/373 (0%) Query: 1 MNNEETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGL 60 MNNE+TFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGL Sbjct: 99 MNNEDTFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGL 158 Query: 61 ECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAV 120 ECTCCTESFIRS+HPLAKDVILSLISLDYDDTLMAAAGTQAE VF+DIIT+Y+GKYILAV Sbjct: 159 ECTCCTESFIRSSHPLAKDVILSLISLDYDDTLMAAAGTQAEAVFDDIITRYHGKYILAV 218 Query: 121 EGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPID 180 EGNPPLGEQGMFCISSGRPFIEKLK+AAAGASAIIAWGTCASWGCVQAARPNPTQATPID Sbjct: 219 EGNPPLGEQGMFCISSGRPFIEKLKKAAAGASAIIAWGTCASWGCVQAARPNPTQATPID 278 Query: 181 KVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAH 240 KVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAH Sbjct: 279 KVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAH 338 Query: 241 FDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAEN 300 FDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGC+EN Sbjct: 339 FDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCSEN 398 Query: 301 GFWDRGSFYSRVVDIPQMGTHSTADTVGLTALGVVAAAVGVHAVASAVDQRRRHN-QQPT 359 GFWDRGSFYSRVVDIPQMGTHSTADTVGLTALGVVAA VGVHAVASAV+QR+RHN Q Sbjct: 399 GFWDRGSFYSRVVDIPQMGTHSTADTVGLTALGVVAAGVGVHAVASAVNQRKRHNQQLAE 458 Query: 360 ETEHQPGNEDKQA 372 + QPGNEDKQA Sbjct: 459 AEQQQPGNEDKQA 471 >UniRef50_P12635 Uptake hydrogenase small subunit n=8 Tax=Bacteria RepID=MBHS_BRAJA Length = 363 Score = 530 bits (1366), Expect = e-149, Method: Compositional matrix adjust. Identities = 235/325 (72%), Positives = 276/325 (84%) Query: 5 ETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTC 64 ETFY +RRQG+TRRSF K+CSL ATSLGLG A +IA ALE KPR+PV+W+HGLECTC Sbjct: 6 ETFYSVIRRQGITRRSFHKFCSLTATSLGLGPLAASRIANALETKPRVPVIWMHGLECTC 65 Query: 65 CTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNP 124 C+ESFIRSAHPL KD +LS+ISLDYDDT+MAAAG QAE + E+ ++ G+YILAVEGNP Sbjct: 66 CSESFIRSAHPLVKDAVLSMISLDYDDTIMAAAGHQAEAILEETRAKHKGQYILAVEGNP 125 Query: 125 PLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVIT 184 PL E GMFCI G+PF+EKLK A A AIIAWG CASWGCVQAA+PNPTQATPIDKVIT Sbjct: 126 PLNEGGMFCIDGGKPFVEKLKMMAEDAMAIIAWGACASWGCVQAAKPNPTQATPIDKVIT 185 Query: 185 DKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAG 244 +KPIIKVPGCPPI +VM+ ++T++ TF +LP++DR GRP MFY QRIHDKCYRR HFDAG Sbjct: 186 NKPIIKVPGCPPIAEVMTGVVTFITTFGKLPELDRQGRPKMFYSQRIHDKCYRRPHFDAG 245 Query: 245 EFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWD 304 +FV+ WDD+AARKGYCLYKMGCKGPTTYNACS+ RWN GVSFPIQSGHGC+GC+E+GFWD Sbjct: 246 QFVEEWDDEAARKGYCLYKMGCKGPTTYNACSTVRWNGGVSFPIQSGHGCIGCSEDGFWD 305 Query: 305 RGSFYSRVVDIPQMGTHSTADTVGL 329 +GSFY R+ +I Q G AD +G+ Sbjct: 306 KGSFYDRLTNIKQFGIEKNADQIGM 330 >UniRef50_O33405 Uptake hydrogenase small subunit n=221 Tax=Bacteria RepID=MBHS_OLICO Length = 360 Score = 504 bits (1299), Expect = e-141, Method: Compositional matrix adjust. Identities = 231/327 (70%), Positives = 276/327 (84%) Query: 1 MNNEETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGL 60 M ETFY+ MRRQGVTRRSFLK+CSL AT+LGLG +IA A+E KPR PV+W+HGL Sbjct: 1 MTPTETFYEVMRRQGVTRRSFLKFCSLTATALGLGPAYTSEIAHAMETKPRTPVLWLHGL 60 Query: 61 ECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAV 120 ECTCC+ESFIRSAHPL KDV+LS+ISLDYDDTLMAAAG QAE D I +Y G YILAV Sbjct: 61 ECTCCSESFIRSAHPLVKDVVLSMISLDYDDTLMAAAGHQAEAALADTIERYKGNYILAV 120 Query: 121 EGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPID 180 EGNPPL E GMFCI G+PF+++L+ AA A AII+WG+CAS GCVQAARPNPT+ATP+ Sbjct: 121 EGNPPLNEDGMFCIIGGKPFVDQLRYAAKHAKAIISWGSCASHGCVQAARPNPTRATPVH 180 Query: 181 KVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAH 240 +VITDKPIIKVPGCPPI +VM+ +ITYM+TF +LP++DR GRP MFY QRIHDKCYRR H Sbjct: 181 QVITDKPIIKVPGCPPIAEVMTGVITYMLTFGKLPELDRTGRPKMFYSQRIHDKCYRRPH 240 Query: 241 FDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAEN 300 FDAG+FV+S+DD+ AR+GYCLYK+GCKGPTTYNACS+ RWN+G SFPIQ+GHGC+GC+E Sbjct: 241 FDAGQFVESFDDEGARRGYCLYKVGCKGPTTYNACSTIRWNEGTSFPIQAGHGCIGCSEE 300 Query: 301 GFWDRGSFYSRVVDIPQMGTHSTADTV 327 GFWD+GS+Y+R+ DI Q G + AD + Sbjct: 301 GFWDKGSWYARLQDIHQFGIEANADQI 327 >UniRef50_B0TDW1 Uptake [ni/fe] hydrogenase small subunit n=11 Tax=Bacteria RepID=B0TDW1_HELMI Length = 395 Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust. Identities = 191/360 (53%), Positives = 255/360 (70%), Gaps = 3/360 (0%) Query: 1 MNNEETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGL 60 M ++++FYQ +R +GV+RR F+K+C++ A SLGL G A IA ALE K R+PV+W + Sbjct: 25 MASQDSFYQYLRNRGVSRRDFIKFCTVMAASLGLEPGAAGAIAEALETKRRMPVIWRNFQ 84 Query: 61 ECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAV 120 ECTCCTESFIR+ HP A D+I+++ISLDY +TLM AAG QAEE I G YILAV Sbjct: 85 ECTCCTESFIRTQHPKASDIIMTMISLDYHETLMVAAGHQAEEAVAKAIEDNRGNYILAV 144 Query: 121 EGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPID 180 EG P+ + G++C +GR ++ LK A A AIIAWG+CA GCVQAA PNPT A P+ Sbjct: 145 EGAIPVKDGGIYCCIAGRTAVDMLKEEAKHAKAIIAWGSCAVNGCVQAANPNPTGAVPVQ 204 Query: 181 KVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAH 240 +I DKPII VPGCP I +VM+ +IT+++TF+RLP++D GRP FYG RIHDKC RRA+ Sbjct: 205 DIIKDKPIINVPGCPAIAEVMAGVITHVLTFERLPELDSQGRPKAFYGHRIHDKCNRRAY 264 Query: 241 FDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAEN 300 FDAG FV+++DD A++G+CLYK+GCKGP TYN+CS+ WN G+S+PI+SGH C+GC+E Sbjct: 265 FDAGMFVENFDDQGAKEGWCLYKLGCKGPNTYNSCSNLEWNGGLSYPIKSGHPCIGCSEF 324 Query: 301 GFWDR---GSFYSRVVDIPQMGTHSTADTVGLTALGVVAAAVGVHAVASAVDQRRRHNQQ 357 GFWD S Y+ + ++P + D G A+G A VHA SAV +++ Q+ Sbjct: 325 GFWDNTGGTSMYAHLSEVPGLKIGVNVDAFGAAAVGAAIAGAAVHAGLSAVTKKQMDRQE 384 >UniRef50_D1BNB1 Hydrogenase (NiFe) small subunit HydA n=5 Tax=Veillonellaceae RepID=D1BNB1_VEIPT Length = 379 Score = 374 bits (959), Expect = e-102, Method: Compositional matrix adjust. Identities = 186/371 (50%), Positives = 245/371 (66%), Gaps = 3/371 (0%) Query: 1 MNNEETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGL 60 +N+ T +Q R ++RR+F+K C LGL M A E V+W+HG Sbjct: 5 INSLWTLFQERR---LSRRTFMKSCVALTAILGLPPTMLDTFVKAAETTELPTVIWLHGH 61 Query: 61 ECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAV 120 ECT C+ESFIRS+ P DVIL++ISL+YDDTL AA+G EE E II + GKYILAV Sbjct: 62 ECTGCSESFIRSSSPFTSDVILNMISLEYDDTLAAASGAPLEEHLEKIIKEKAGKYILAV 121 Query: 121 EGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPID 180 EG PL E G++C GR F E L AA GA+AII +G+CASWG +QAA+PNPT + Sbjct: 122 EGGVPLDEDGVYCTVGGRTFKESLLEAAKGAAAIIEYGSCASWGGIQAAKPNPTNTVSVS 181 Query: 181 KVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAH 240 V++ KPIIKVPGCPPIP+VM+ +I + F ++P +D GRP FYG RIHD CYRRA Sbjct: 182 SVVSGKPIIKVPGCPPIPEVMTGVIMHYALFGQIPPLDSQGRPKQFYGNRIHDTCYRRAF 241 Query: 241 FDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAEN 300 FD+G FV+ +DDDA++ G+CLYK+GC+GP TYN+C + RW +G+S+PIQSGHGC+GC+E Sbjct: 242 FDSGLFVEKFDDDASKSGWCLYKVGCRGPQTYNSCGNLRWWNGLSYPIQSGHGCIGCSEK 301 Query: 301 GFWDRGSFYSRVVDIPQMGTHSTADTVGLTALGVVAAAVGVHAVASAVDQRRRHNQQPTE 360 GFWD FY R+ DIP T +TADT+G A AAV VH A+ + ++ Sbjct: 302 GFWDNDVFYKRLPDIPLANTITTADTIGTVAAVGATAAVIVHGAATLTRNKILDMKEEKR 361 Query: 361 TEHQPGNEDKQ 371 + Q ++K+ Sbjct: 362 LKEQGLWDEKK 372 >UniRef50_B4U5S1 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U5S1_HYDS0 Length = 320 Score = 352 bits (903), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 159/313 (50%), Positives = 217/313 (69%), Gaps = 1/313 (0%) Query: 5 ETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTC 64 ET+Y + +GV R F+ + + LG+ I AL+ KPRIPV+W HGLECTC Sbjct: 2 ETYYDFLAGRGVRYREFISFSTKICGLLGINPNEINDIINALKQKPRIPVLWFHGLECTC 61 Query: 65 CTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNP 124 C+ES +RS+ P+ D++ SLISL+YDD + A+ G + II QY G YILA+EG+ Sbjct: 62 CSESLMRSSSPVFSDMV-SLISLEYDDLISASCGENLLNYKKKIIEQYKGNYILAIEGSI 120 Query: 125 PLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVIT 184 E G C+ GR F E+L AA GA AIIAWG+CAS+GCVQ A PNPT+++ +D +I Sbjct: 121 TEFEDGACCMVGGRSFNEELLEAAEGAKAIIAWGSCASFGCVQVAYPNPTKSSSVDTIIK 180 Query: 185 DKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAG 244 +KPI+KVPGCPPIP+VM+++I YM+ D LP +D RP MFYG IHD CYR+ ++A Sbjct: 181 NKPIVKVPGCPPIPEVMASVIVYMLLKDELPPLDSKLRPKMFYGMTIHDTCYRKNFYNAN 240 Query: 245 EFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWD 304 +F + +DD+ ++ G+CLYK+GCKGP+TYNACSS W +G+SFPI+SGHGC+GC++ GFWD Sbjct: 241 KFAERFDDEGSKAGHCLYKLGCKGPSTYNACSSIGWYNGLSFPIKSGHGCIGCSQEGFWD 300 Query: 305 RGSFYSRVVDIPQ 317 + + PQ Sbjct: 301 KTMYKEEAPITPQ 313 >UniRef50_A7BI79 Ni,Fe-hydrogenase small subunit n=2 Tax=Aquificaceae RepID=A7BI79_HYDTH Length = 345 Score = 334 bits (856), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 165/351 (47%), Positives = 221/351 (62%), Gaps = 7/351 (1%) Query: 5 ETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTC 64 E+ Y RR+G TRR FLK L + LG + ALE KP+ V+W+ +C Sbjct: 2 ESLYHIYRRRGYTRRDFLKSVLLLSAVLGFPPTSFGQAVKALELKPKPVVIWLEFQDCAG 61 Query: 65 CTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNP 124 CTESFIRS L DV+L ISL+Y +TLM+ +G AEE + I +Y GKYIL VEG+ Sbjct: 62 CTESFIRSTSILPSDVLLDYISLEYHETLMSPSGFYAEEAKREAIEKYKGKYILIVEGSV 121 Query: 125 PLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVIT 184 +G++C SG+ +E LK AA A +IA G+CASWG + A PNPT A P+ +++ Sbjct: 122 SPRNKGVYCTVSGKSNVELLKEAAQNAGLVIAVGSCASWGGIPHAEPNPTGAVPVSQILG 181 Query: 185 DKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAG 244 D+ ++ +PGCPPI DVM A+I V + P++D MGRP FYGQ IHD+CYRR ++AG Sbjct: 182 DRQVVNIPGCPPISDVMVAVIAGFVITGKPPELDSMGRPKTFYGQTIHDRCYRRPFYNAG 241 Query: 245 EFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWD 304 + S+DD++ARKGYCLYK+GCKGP T NAC++ RWN G+SFPIQSGH C GC+E FWD Sbjct: 242 KLAGSFDDESARKGYCLYKLGCKGPITRNACATIRWNGGLSFPIQSGHPCFGCSEPNFWD 301 Query: 305 RGSFYSRVVDIPQMGTHSTADTVGLTALGVVAAAVGVHAVASAVDQRRRHN 355 RG YS P G+ L VA V + A ++A++++ R Sbjct: 302 RGFIYS-----PLSVVEGGFGWKGI--LAGVATGVALGAASAAINKKFREK 345 >UniRef50_C6NZV2 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Proteobacteria RepID=C6NZV2_9PROT Length = 371 Score = 320 bits (821), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 148/315 (46%), Positives = 210/315 (66%), Gaps = 2/315 (0%) Query: 6 TFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCC 65 T + + ++G++RR FL++C+ A L L MA +A A+ R V+W+ ECT C Sbjct: 13 TVGEGLAQRGISRREFLQFCTSLAALLALPPSMASVMAEAISKARRQSVIWLSFQECTGC 72 Query: 66 TESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPP 125 TES RS P + +I +ISLDY TL AA+G AE + GKY++ V+G+ P Sbjct: 73 TESITRSHSPTLESLIFEMISLDYHHTLQAASGEAAEHARLQAMKDNEGKYLVIVDGSIP 132 Query: 126 LGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITD 185 +G G I+ G + L A GA+AI+A GTCA++G + A PNPT A P+ ++ D Sbjct: 133 MGNPGYSAIA-GISNHDMLVETAKGAAAIVAVGTCATYGGIPMADPNPTGAVPVSDIVKD 191 Query: 186 KPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGE 245 KPII VPGCPPIP VM+ ++ + +TF +P++D +GRP FYG+ IHD+CYRR +D G+ Sbjct: 192 KPIINVPGCPPIPVVMTGVLAHFLTFGGIPELDALGRPKSFYGETIHDRCYRRPFYDQGK 251 Query: 246 FVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDR 305 F +++DD+AAR G+CL+K+GCKGP TYNAC++T+WNDG SFPI+SGHGC+GC+E FWD Sbjct: 252 FAETFDDEAARNGWCLFKLGCKGPVTYNACATTKWNDGTSFPIESGHGCIGCSEPKFWDA 311 Query: 306 GSFYSRVVDIPQMGT 320 G FY + + +P T Sbjct: 312 GPFY-KALSMPVSAT 325 >UniRef50_A8LH34 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Frankia sp. EAN1pec RepID=A8LH34_FRASN Length = 400 Score = 307 bits (787), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 155/361 (42%), Positives = 220/361 (60%), Gaps = 10/361 (2%) Query: 15 GVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFIRSAH 74 GV RRSFLK+C+ +L L A +AP++A+AL+ R V+W+ +C +E+F+RS + Sbjct: 17 GVDRRSFLKFCAGITATLALPAQLAPRVAYALDKVDRPTVIWLEFQDCAGDSEAFLRSRN 76 Query: 75 PLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCI 134 P A D+IL +ISLDY +T+MAA+GT AE+ +D + + G +++ VEG+ P G G C Sbjct: 77 PSAADLILGMISLDYHETVMAASGTAAEKARDDAVAK--GGHLVVVEGSIPTGIPGA-CT 133 Query: 135 SSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGC 194 G+ + L+ A GA+ II GTC+++G + AA PNPT A ++ V+ P++ + GC Sbjct: 134 IGGKSAEDILREAVRGAAGIINVGTCSAFGGIPAAGPNPTGAVRVEDVVGGVPVVNLTGC 193 Query: 195 PPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDA 254 P D ++A I + +TF P DR RPL YGQRIHD C RR HFDAGEF + W D Sbjct: 194 PVNADNLTATIVHHLTFGEFPARDRFSRPLFAYGQRIHDTCQRRGHFDAGEFAEQWGDAG 253 Query: 255 ARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGS-FYSRVV 313 R G+CLY++GCKGP+T++ C S R+N G S+P+ +GHGC+GC+E GFWD S FY R+ Sbjct: 254 HRNGWCLYRLGCKGPSTFHNCPSVRFNGGTSWPVAAGHGCVGCSEPGFWDTMSPFYDRLP 313 Query: 314 DIPQMGTHSTADTVGLTALGVVAAAVGVHAVASAVDQR---RRHNQQP---TETEHQPGN 367 + G TAD +G+ L A H V V R RR Q E + P + Sbjct: 314 HVATSGFDLTADRIGVGVLAATATGFAAHGVGKVVQHRVAARREKQAARDLVEDDEAPTD 373 Query: 368 E 368 E Sbjct: 374 E 374 >UniRef50_B2UPQ9 Hydrogenase (NiFe) small subunit HydA n=8 Tax=Bacteria RepID=B2UPQ9_AKKM8 Length = 398 Score = 301 bits (771), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 161/378 (42%), Positives = 233/378 (61%), Gaps = 14/378 (3%) Query: 5 ETFYQAMRRQGVTRRSFLKYCSLAATSLGL-----GAGMAPKIAWALENKPRIPVVWIHG 59 ET + M R+GV+RR F K+C + +G+ G A +IA + R V+W+ Sbjct: 21 ETLGEHMERRGVSRREFNKWCLKMISLMGVATVTGGISNAQEIADKMAALKRPVVIWLQL 80 Query: 60 LECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILA 119 ECT C ES IRS + D++LS +S+ Y + LMA +G A + ED I + +IL Sbjct: 81 QECTGCLESTIRSYNEEIGDMVLSAVSMPYVELLMAPSGEAANQALEDAIRE---PHILV 137 Query: 120 VEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPI 179 + G+ P+ + G++C +G L+ A AS I+A G+CA +G +QAARPNPT A I Sbjct: 138 INGSVPVNDGGVYCTVAGDTVENMLRHCAENASHILAVGSCAYFGSIQAARPNPTGAVGI 197 Query: 180 DKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRA 239 ++TD+ +I VPGCPPI DV++A+I Y++TFDR P+ D RPLM YG RIH+ C RRA Sbjct: 198 RDILTDRTVINVPGCPPIGDVITAVIMYILTFDRAPECDLESRPLMAYGTRIHNNCPRRA 257 Query: 240 HFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAE 299 HFDAG+FV +DD+ AR+ +CLYK+GCKGP T++ C +WN GVSFPIQSGH C+GC E Sbjct: 258 HFDAGQFVNVFDDENARECFCLYKVGCKGPDTFSPCPIVKWNGGVSFPIQSGHPCIGCTE 317 Query: 300 NGFWDRGS-FYSRVVDIPQMGTHSTADTVGLTALGVVAAAVGVHAVASAVDQRRRHNQQP 358 F+DR + FY + ++ G ++A+ +G + AA+ HAV SA+ R++H ++ Sbjct: 318 LYFFDRMTPFYKTLPNVNGFGVEASANIIGAVGVAGAGAAIAAHAVGSAIHYRKQHMKEE 377 Query: 359 TETE-----HQPGNEDKQ 371 PG+ DK+ Sbjct: 378 ANVSLPAFGDAPGSPDKE 395 >UniRef50_P31884 Quinone-reactive Ni/Fe-hydrogenase small chain n=12 Tax=Bacteria RepID=MBHS_WOLSU Length = 354 Score = 299 bits (765), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 159/354 (44%), Positives = 211/354 (59%), Gaps = 10/354 (2%) Query: 11 MRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFI 70 + +G+ RR F+K+ L L A P A A E R+PV+W+H ECT C+ES + Sbjct: 2 LEEKGIERRDFMKWAGAMTAMLSLPATFTPLTAKAAELADRLPVIWLHMAECTGCSESLL 61 Query: 71 RSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQG 130 R+ P +I ISL+Y +T+MAAAG QAE E I +Y G+Y+L VEG P G Sbjct: 62 RTDGPGIDSLIFDYISLEYHETVMAAAGWQAEHNLEHAIEKYKGRYVLMVEGGIPAGSSE 121 Query: 131 MFCISS--GRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI 188 + G E + A+A A+AI A G+C+S+G VQAARPNPT A P+ KV T+KP+ Sbjct: 122 FYLTVGPHGTTGAEHARHASANAAAIFAIGSCSSFGGVQAARPNPTNAQPLSKV-TNKPV 180 Query: 189 IKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQ 248 I VPGCPP + + + + F LP VD RP+ YG RIHD C RR FDAGEFVQ Sbjct: 181 INVPGCPPSEKNIVGNVLHFILFGTLPSVDAFNRPMWAYGLRIHDLCERRGRFDAGEFVQ 240 Query: 249 SWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWD-RGS 307 + D+ A+KGYCLYK+GCKGP T+N CS R+N S+P+Q+GHGC+GC+E FWD G Sbjct: 241 EFGDEGAKKGYCLYKVGCKGPYTFNNCSKLRFNQHTSWPVQAGHGCIGCSEPDFWDTMGP 300 Query: 308 FYSRVVD------IPQMGTHSTADTVGLTALGVVAAAVGVHAVASAVDQRRRHN 355 F V + +G TAD +G+T L A V HAV S + + + +N Sbjct: 301 FEEPVANRLYATAFDGLGADKTADKIGITLLAATAVGVAAHAVLSMMVKDKENN 354 >UniRef50_C2KSS0 Hydrogenase (Acceptor) n=3 Tax=Bacteria RepID=C2KSS0_9ACTO Length = 423 Score = 298 bits (763), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 147/351 (41%), Positives = 221/351 (62%), Gaps = 14/351 (3%) Query: 4 EETFYQAMRRQGVTRRSFLKYCSLAATSLGLGA-------GMAPK---IAWALENKPRIP 53 E T + + + GV+RR F+K+CS A +G + P IA L + Sbjct: 25 EGTLAENIAKAGVSRRDFMKFCSSLAAIFAVGTPVMANAKALRPSTEHIAKVLGEVKKPL 84 Query: 54 VVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYN 113 V W+ ECT C ES +RS ++V+L+L+S++Y++ +MAA+G AE+ E++ Q Sbjct: 85 VAWLQLQECTGCMESTLRSGGTTVEEVVLNLLSVNYNELVMAASGEAAEKALEEVNAQ-- 142 Query: 114 GKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNP 173 +IL V G+ P+ + G++C G+ + L+ +A AS I+A G CA +G VQAARPNP Sbjct: 143 -DHILVVNGSIPVKDGGIYCTIGGKSAQQVLEESAENASMILAVGACAVYGSVQAARPNP 201 Query: 174 TQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHD 233 T A +D++I DKP+I V GCPPI +V++A + Y++T + P++D GRPL YGQRIHD Sbjct: 202 TGAVGVDEIIKDKPVINVAGCPPIGEVITATLAYILTKGKAPELDAEGRPLFAYGQRIHD 261 Query: 234 KCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHG 293 C RR HFDAG+FV+++DD AR+G+CLY +GCKGP+T++ C +WN +PI +GH Sbjct: 262 SCPRRPHFDAGQFVRTFDDAGAREGWCLYDVGCKGPSTFSPCPIVQWNLKSGWPIGAGHP 321 Query: 294 CLGCAENGFWDRGS-FYSRVVDIPQMGTHSTADTVGLTALGVVAAAVGVHA 343 C+GC E F+DR + FYS++ ++ G +TA+ +G +VA V VHA Sbjct: 322 CIGCTERDFYDRFTPFYSKLPNVTGFGIEATAEQIGWGMTALVAGGVAVHA 372 >UniRef50_C1DUF2 Quinone-reactive Ni/Fe-hydrogenase small chain (Membrane-bound hydrogenase small subunit) (Hydrogen:quinoneoxidoreductase) n=3 Tax=Bacteria RepID=C1DUF2_SULAA Length = 416 Score = 296 bits (759), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 150/355 (42%), Positives = 218/355 (61%), Gaps = 10/355 (2%) Query: 7 FYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCT 66 F + + ++RR F K+ S+ +L L P +A A E R+PV+WI+ +C T Sbjct: 56 FDEYLSMWDISRRDFFKWVSMMTATLMLPPSFEPLVAQAAEVMNRVPVIWINIQDCDGNT 115 Query: 67 ESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPL 126 E+ IRS+ P ++IL +S++Y +TLMAAAG QAE+ ED + + G+Y+L VEG+ P+ Sbjct: 116 EALIRSSAPTVDELILDYLSIEYQETLMAAAGDQAEKCLEDAVKTFKGQYLLFVEGSIPV 175 Query: 127 GEQGMFCISSGR---PFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVI 183 + + ++GR +++++R A A A+IA G CAS+G V AA PNPT A + V+ Sbjct: 176 KME--YAFTTGRHPETGVQRVRRLAKDAKAVIAVGACASFGGVPAAYPNPTGAVGVMDVV 233 Query: 184 TDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDA 243 + P++ +P CP P + +I + V LP++D + RP +G RIHD C RRAHFDA Sbjct: 234 SGVPVVNIPACPANPVNIVGVIMHYVLTGSLPELDSLKRPKFAFGYRIHDNCERRAHFDA 293 Query: 244 GEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFW 303 GEFV+ W D+ A+ +CLYKMGCKGP T+N CS R+NDG ++PI G GC+GC+E FW Sbjct: 294 GEFVEEWGDEGAKNNFCLYKMGCKGPFTFNNCSIVRYNDGTNWPIGVGRGCIGCSEPDFW 353 Query: 304 DRGSFYSRVV--DI--PQM-GTHSTADTVGLTALGVVAAAVGVHAVASAVDQRRR 353 D+ + V DI P + G ST D VGLT L A +G HAV SA+ ++ Sbjct: 354 DKYATERPVAASDIRPPAIGGVESTVDKVGLTILTATAIGIGAHAVMSALAGKKE 408 >UniRef50_C3XGH6 Ni/Fe-hydrogenase small subunit n=8 Tax=Proteobacteria RepID=C3XGH6_9HELI Length = 425 Score = 295 bits (756), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 147/345 (42%), Positives = 208/345 (60%), Gaps = 9/345 (2%) Query: 9 QAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTES 68 + ++ +G+ RR F+K+ ++ S+GL A AP A A E R+P++W+H ECT C+ES Sbjct: 77 EVLQEKGIQRRDFMKWAAVVTASIGLPATFAPLTARAAELADRVPIIWLHMAECTGCSES 136 Query: 69 FIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGE 128 +RS P +I +S++Y +T+MAA+G QAE+ ED + +Y+G+Y++ VEG P Sbjct: 137 LLRSEDPCIDSIIFDYVSMEYHETIMAASGYQAEKSLEDAVKKYDGRYVMMVEGGIPKDT 196 Query: 129 QGMFCI-SSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKP 187 + I +SGR E+ + A A+AI A GTC+S+G VQAA PNPT A P+ +I DK Sbjct: 197 EYFLTIGASGRTGAEECRHVAKHAAAIFAIGTCSSFGGVQAAAPNPTNAHPLSDII-DKK 255 Query: 188 IIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFV 247 +I VPGCPP + + + F + +D RP YG RIHD C RR FDAGEFV Sbjct: 256 VINVPGCPPNEKNIVGTLMQHILFGDMA-LDAFHRPKWAYGHRIHDLCERRGRFDAGEFV 314 Query: 248 QSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGS 307 Q + D+ A+ GYCLYK+GCKGP T+N CS R+N ++PI +GHGC+GC+E FWD S Sbjct: 315 QHFGDENAKNGYCLYKVGCKGPYTFNNCSKLRFNSHTNWPIGAGHGCIGCSEPHFWDTMS 374 Query: 308 FYSRVVD------IPQMGTHSTADTVGLTALGVVAAAVGVHAVAS 346 + + G TAD VG+ LG A + HA+ S Sbjct: 375 PFEVPLGNRYQTAFRGAGADHTADRVGMVILGATAIGIAAHAMLS 419 >UniRef50_A5GFC8 Hydrogenase (NiFe) small subunit HydA n=6 Tax=Proteobacteria RepID=A5GFC8_GEOUR Length = 378 Score = 287 bits (735), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 139/299 (46%), Positives = 193/299 (64%), Gaps = 4/299 (1%) Query: 1 MNNEETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGL 60 M EE F A GV+RRSF+K C A +GL M K+A A+E V+W+H Sbjct: 6 MKKEEDFLCA----GVSRRSFMKTCITATAMMGLPFSMHTKVAEAMEKNGNPSVIWLHFQ 61 Query: 61 ECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAV 120 ECT C+ES +RS HP +IL +ISLDY +TLMA +G QAE+ D + GKY+L V Sbjct: 62 ECTGCSESLLRSTHPTISTLILDMISLDYHETLMAGSGAQAEKSLHDSMLANKGKYLLVV 121 Query: 121 EGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPID 180 EG P E G++C G+ +E L+ AA+ A+AII+ GTCAS+G +Q+ PNPT A + Sbjct: 122 EGAIPTKESGIYCKVGGKTALESLQHAASNAAAIISIGTCASYGGIQSVGPNPTGAVGVR 181 Query: 181 KVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAH 240 ++ DKPII +PGCPP P + + + Y +TF ++P++D +GRP YG++IH+ C RR H Sbjct: 182 DIVKDKPIINIPGCPPSPYNLLSTVMYYLTFKKIPELDALGRPKFAYGRKIHEHCERRPH 241 Query: 241 FDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAE 299 FDAG F +++ DD +GYCL+K+GCKGP TY CS R+N+ +P+ GH C+GC E Sbjct: 242 FDAGRFAKAYGDDTHAQGYCLFKLGCKGPATYANCSVQRFNEVGVWPVSVGHPCIGCTE 300 >UniRef50_A6DCC1 NI/FE-HYDROGENASE SMALL SUBUNIT n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DCC1_9PROT Length = 369 Score = 281 bits (719), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 136/318 (42%), Positives = 205/318 (64%), Gaps = 5/318 (1%) Query: 1 MNNEETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGL 60 ++ ++ + + +G++RR FLK+ S+ LGL P +A ++ +IPV+W++ Sbjct: 15 LSPDKNIEKILEVEGISRRDFLKWVSVTTAMLGLPGFFEPLVAQSINALNKIPVIWMNYQ 74 Query: 61 ECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAV 120 +C +ES +R++ P ++I++LISL++ + LMA +GTQAE E+ I Y G+Y+L V Sbjct: 75 DCAGNSESILRASKPTIDEIIINLISLEFHELLMAPSGTQAENQLEETIQNYEGEYLLFV 134 Query: 121 EGNPPLGEQGMFCI--SSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATP 178 EG+ PL + G++ SG + + L R A+ A AIIA G CAS+G V AA PNPT AT Sbjct: 135 EGSIPLADNGVYGTIGPSGETYKDHLLRLASKAKAIIAVGNCASFGGVVAANPNPTGATG 194 Query: 179 IDKVI-TDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYR 237 + V + PII +P CP P+ M ++ LP++D + RPL Y RIHD+C R Sbjct: 195 VMGVDGINVPIINLPACPVNPETMIGVLIMYALTGELPELDSLKRPLFAYASRIHDRCER 254 Query: 238 RAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGC 297 R HFDAGEFV+S+ D+A++ GYCLYK+GCKGP T+N C + ++ND S+P+ +GHGC+GC Sbjct: 255 RVHFDAGEFVESFGDNASQSGYCLYKVGCKGPFTFNNCPTVKFND-TSWPVDAGHGCIGC 313 Query: 298 AENGFWDR-GSFYSRVVD 314 +E GF D+ GSF V+ Sbjct: 314 SEPGFVDKFGSFEKPFVE 331 >UniRef50_A7NNQ8 Hydrogenase (NiFe) small subunit HydA n=12 Tax=Bacteria RepID=A7NNQ8_ROSCS Length = 417 Score = 277 bits (709), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 136/316 (43%), Positives = 191/316 (60%), Gaps = 2/316 (0%) Query: 14 QGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFIRSA 73 +GV+RR FLK+C+ + +L L + P+IA AL R+PVVW+ +C TESF+R+ Sbjct: 15 RGVSRRQFLKFCAAMSAALALPSTFTPRIARALNTAERLPVVWLEFQDCAGNTESFLRAE 74 Query: 74 HPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFC 133 P D++L ISL+Y +T+MA AG +AE + ++ Y G+YI VEG+ P+ G++C Sbjct: 75 SPGVADIVLEQISLEYHETIMAPAGHRAEHSLDAVVENYPGQYIAIVEGSIPIANGGVYC 134 Query: 134 ISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITD-KPIIKVP 192 GR + +R + A A IA G CA G AA PNPT A + + + K +I +P Sbjct: 135 TIGGRTALSIAERVCSNALATIAVGACAWDGGWPAASPNPTGAVGVRQAVPGLKNLINLP 194 Query: 193 GCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDD 252 GCP ++A+I + +TF +LP D GRP YGQ IH+ C RR HFD+G FV+ W D Sbjct: 195 GCPMNVINLTAVIVHYLTFKQLPATDEQGRPFFAYGQLIHNNCERRGHFDSGRFVERWGD 254 Query: 253 DAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGS-FYSR 311 + R G+CLYKMGCKGP T + C + WN +PI +GHGC+GC FWD S FY R Sbjct: 255 EGHRLGWCLYKMGCKGPQTLSNCPAVGWNGTSYWPIGAGHGCVGCMSPRFWDTMSPFYER 314 Query: 312 VVDIPQMGTHSTADTV 327 + ++ G TADT+ Sbjct: 315 LPNVEGFGIEVTADTL 330 >UniRef50_P69743 Hydrogenase-2 small chain n=130 Tax=Proteobacteria RepID=MBHT_ECO57 Length = 372 Score = 259 bits (663), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 123/293 (41%), Positives = 189/293 (64%), Gaps = 1/293 (0%) Query: 11 MRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFI 70 + G+ RR F+K C+ A ++GL + A ++A ++ N R PV+WI ECT CTES + Sbjct: 8 IHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLL 67 Query: 71 RSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQG 130 R+ HP ++++L ISL+Y + L AA G Q EE + + +Y G+Y+L V+G+ PL + G Sbjct: 68 RATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNG 127 Query: 131 MFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIK 190 ++C+ +G P ++ +++AA GA+AIIA G+C++WG V AA NPT A + +V+ K +I Sbjct: 128 IYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVIN 187 Query: 191 VPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSW 250 +PGCPP P A + +++T+ + P +D RP YG+ IH+ C RR HFDAG F + + Sbjct: 188 IPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEF 247 Query: 251 DDDAARKGYCLYKMGCKGPTTYNACSSTRWND-GVSFPIQSGHGCLGCAENGF 302 D+ R+G+CLY +GCKGP TY CS+ ++ D G +P+ GH C GC E G Sbjct: 248 GDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGI 300 >UniRef50_C0QEJ1 HynB n=4 Tax=Deltaproteobacteria RepID=C0QEJ1_DESAH Length = 330 Score = 257 bits (656), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 127/305 (41%), Positives = 184/305 (60%), Gaps = 9/305 (2%) Query: 4 EETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKP---RIPVVWIHGL 60 E++FY+ + +GV+RR FLKYC++ S+GL A ++A ++E R VVW+H Sbjct: 22 EKSFYERLEGKGVSRRDFLKYCTVMTASMGLSASCVGQVASSIEKAASGTRPSVVWLHFG 81 Query: 61 ECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAV 120 ECT C+E+F+R+ P +IL IS++Y +T+MAA+G QAE+ E I + GK+I V Sbjct: 82 ECTGCSEAFLRT--PNVGAIILETISVEYHETIMAASGHQAEKSLEQAIKTHKGKFICVV 139 Query: 121 EGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPID 180 EG+ G + GR F+E A+ IA GTCA++G + +A PNP + Sbjct: 140 EGSIATAYNGAYGKVGGRTFLEIANDVIPKAAVTIALGTCAAYGGIPSAAPNPGGYKGVK 199 Query: 181 KVITDKPIIKVPGCPPIP-DVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRA 239 I I + GCPP P +++S I+ Y+ ++D +GRPL Y + +HD+C R Sbjct: 200 DAI-GVATINISGCPPNPLNLLSTIVKYLN--KETIELDELGRPLFAYAETVHDRCPRLK 256 Query: 240 HFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAE 299 HF+ EFV+ + A GYCLY MGCKGP TYN C + ++NDG SFPIQ+GH C+GC+E Sbjct: 257 HFENDEFVEEFGSKEAELGYCLYHMGCKGPETYNNCPTAKFNDGTSFPIQAGHPCIGCSE 316 Query: 300 NGFWD 304 FWD Sbjct: 317 PDFWD 321 >UniRef50_Q3ABV6 [Ni/Fe] hydrogenase, small subunit n=3 Tax=Clostridia RepID=Q3ABV6_CARHZ Length = 354 Score = 252 bits (644), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 132/344 (38%), Positives = 195/344 (56%), Gaps = 14/344 (4%) Query: 16 VTRRSFLKYCSLAATSLGLGAGMAPKIAWALEN--KPRIPVVWIHGLECTCCTESFIRSA 73 ++RR FLK+ S A +LGL + P++A+ALEN K + PV+WI G CT C+ S + S Sbjct: 4 ISRREFLKFASFTAATLGLSQSV-PEVAYALENAAKGQPPVIWIQGASCTGCSVSLLNSV 62 Query: 74 HPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFC 133 HP K+++L +I+L + + AA G A E F + GK+ L VEG P + G++C Sbjct: 63 HPDIKEILLEIINLKFHPNISAATGHVAVEAFLGEAEKNKGKFFLVVEGAVPTKDNGVYC 122 Query: 134 I---SSGRP--FIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI 188 GR F E +K A A+IA GTCA++G + AA PNPT P+ +VI K + Sbjct: 123 SIGEKDGRELYFSEVVKELGEKAKAVIAIGTCAAFGGIPAADPNPTGCVPVTEVIDPKKV 182 Query: 189 IKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQ 248 + +PGCPP PD + +++ ++ LP D+ GRP MFY IHD C RR +FD F + Sbjct: 183 LNIPGCPPHPDWFVGSLAHVLLYNELPKTDKFGRPKMFYEGIIHDNCPRRQYFDNSIFAK 242 Query: 249 SWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDR-GS 307 + + CL +GCKGP T++ C + WN GV++ I++GH C+GC E GF D+ G Sbjct: 243 DFSEPG-----CLLLLGCKGPVTHSDCPTRLWNGGVNWCIKAGHPCIGCTEPGFPDKTGP 297 Query: 308 FYSRVVDIPQMGTHSTADTVGLTALGVVAAAVGVHAVASAVDQR 351 Y ++ +I G ++ADT G A +G H + + R Sbjct: 298 IYEKMPEIKLPGISASADTFGEVVGAATAIGLGAHLIGNIATGR 341 >UniRef50_Q06173 Periplasmic [NiFe] hydrogenase small subunit 1 n=17 Tax=Bacteria RepID=PHNS1_DESVH Length = 317 Score = 250 bits (638), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 126/304 (41%), Positives = 188/304 (61%), Gaps = 5/304 (1%) Query: 9 QAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTES 68 + + R+GV+RR FLK+C+ A ++G+G AP++A AL R VV++H ECT C+ES Sbjct: 14 ERLARRGVSRRDFLKFCTAIAVTMGMGPAFAPEVARALTGSRRPSVVYLHNAECTGCSES 73 Query: 69 FIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGE 128 +R+ P ++IL ISLDY +T+MAAAG AE + +G +I VEG P + Sbjct: 74 VLRAFQPYLDELILDTISLDYHETIMAAAGDAAEAALHQAVANPDG-FICIVEGAIPTAD 132 Query: 129 QGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI 188 G++ + + A A+IA+GTCA++G VQAA+PNPT A ++ + + Sbjct: 133 NGIYGKVANHTMLSICSDIVPKAKAVIAYGTCATFGGVQAAKPNPTGAKGLNDALKHLGV 192 Query: 189 --IKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEF 246 I + GCPP P + + Y + + P++D RPLMF+GQ +HD C R HFDAGEF Sbjct: 193 NAINLAGCPPNPYNLVGTLVYYLKNNAAPEMDEFNRPLMFFGQSVHDNCPRLKHFDAGEF 252 Query: 247 VQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRG 306 S++ + ARKG+CLY++GCKGP+T N C ++N ++P+++GH C+GC+E FWD Sbjct: 253 APSFESEEARKGWCLYELGCKGPSTMNNCPKIKFNQ-TNWPVEAGHPCIGCSEPDFWDEK 311 Query: 307 S-FY 309 S FY Sbjct: 312 SPFY 315 >UniRef50_D1U6F3 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U6F3_9DELT Length = 328 Score = 250 bits (638), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 131/319 (41%), Positives = 189/319 (59%), Gaps = 16/319 (5%) Query: 9 QAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTES 68 + + ++GVTRR F+K+C A +G+G APK+A AL + R VVW+H ECT C+ES Sbjct: 14 ERLEKRGVTRRDFMKFCGTVAAVMGMGPAFAPKVAEALTSDTRPDVVWLHNAECTGCSES 73 Query: 69 FIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLG- 127 +R+ P +IL ISL+Y +TLMAAAG AE+ D + GKY+ +EG P Sbjct: 74 ILRTVEPYIDALILDYISLNYHETLMAAAGHAAEKALWDTVAA--GKYVAVIEGGVPTAP 131 Query: 128 -----EQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKV 182 E G G +E + A A I +GTCAS+G VQ A PNPT +D++ Sbjct: 132 AGTANEPGGHGKVGGHTMLENTTKVVEKALATITYGTCASYGGVQKAAPNPTACKGVDEL 191 Query: 183 ITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFD 242 KPII VPGCPP P + I Y VT +P++D +GRP+ FYG+ +HD C R+ F+ Sbjct: 192 FPGKPIINVPGCPPNPYSLVGTIVYYVT-KGVPELDSVGRPVAFYGESVHDNCPRQEFFN 250 Query: 243 AGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGF 302 +F S+ + ARKG+CL K+GC+G TYN C + ++N ++P+Q+GH C+GC++ F Sbjct: 251 MDQFAPSFGSEEARKGWCLRKLGCRGVETYNNCPTVKFNQ-YNWPVQAGHPCIGCSQPNF 309 Query: 303 WD------RGSFYSRVVDI 315 WD + FY+ + D+ Sbjct: 310 WDGEDWDGKTYFYADLTDL 328 >UniRef50_P61429 Periplasmic [NiFe] hydrogenase small subunit 2 n=9 Tax=Desulfovibrio RepID=PHNS2_DESVH Length = 324 Score = 247 bits (630), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 124/291 (42%), Positives = 185/291 (63%), Gaps = 5/291 (1%) Query: 16 VTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFIRSAHP 75 +TRR F+K+C + A ++G+G G AP +A AL+ K R VV++HG ECT CTE +RS P Sbjct: 21 MTRREFMKFCGIVAVAMGMGPGFAPAVAEALQAKGRPSVVYMHGAECTGCTEGLLRSIDP 80 Query: 76 LAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCIS 135 +++ +ISLDY +T+MAAAG A ED + G Y+ +EG P + G++ Sbjct: 81 FIDILMMEVISLDYCETVMAAAGRAAHHALEDALRNPAG-YVCTIEGAIPTRKGGVYGQV 139 Query: 136 SGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI--IKVPG 193 G + R A+GA A+IA GTCAS+G +QAA PNP+ A + + + I I + G Sbjct: 140 GGETMLSLFSRVASGAKAVIAMGTCASFGGIQAAAPNPSGAIGVREALAPFGIQPINIAG 199 Query: 194 CPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDD 253 CPP P + +++T +P++D GRP MFYG +HD+C RR HF+A EF ++ Sbjct: 200 CPPNPVNYIGTVVHLLT-KGMPELDSAGRPKMFYGTTVHDQCERRKHFNADEFAPGFESK 258 Query: 254 AARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWD 304 AR+G+CL+K+GC+GP TYN C + ++N V++P+++G C+GC+E GFWD Sbjct: 259 EAREGWCLHKLGCRGPYTYNNCPTAQFNQ-VNWPVRAGAPCIGCSEPGFWD 308 >UniRef50_P13061 Periplasmic [NiFe] hydrogenase small subunit n=63 Tax=Proteobacteria RepID=PHNS_DESDA Length = 315 Score = 239 bits (609), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 125/298 (41%), Positives = 184/298 (61%), Gaps = 6/298 (2%) Query: 9 QAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTES 68 + + RQG++RR F+K+C+ A ++G+G A +A AL + R VV++H ECT C+E+ Sbjct: 14 ERLERQGISRRDFMKFCTAVAVAMGMGPAFATDVAAALTGR-RPSVVYLHAAECTGCSEA 72 Query: 69 FIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGE 128 +R+ P +IL ISLDY +T+MAAAG AEE + + +G +I VEG P G Sbjct: 73 LLRTYQPFIDTLILDTISLDYHETIMAAAGEAAEEALQAAVNGPDG-FICLVEGAIPTGM 131 Query: 129 QGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI 188 + +G + K A A+++ GTCA +G +QAA+PNPT A I+ D + Sbjct: 132 DNKYGYIAGHTMYDICKNILPKAKAVVSIGTCACYGGIQAAKPNPTAAKGINDCYADLGV 191 Query: 189 --IKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEF 246 I VPGCPP P M + + ++ ++D +GRP+MF+GQ +HD C RR HFDAGEF Sbjct: 192 KAINVPGCPPNPLNMVGTLVAFLKGQKI-ELDEVGRPVMFFGQSVHDLCERRKHFDAGEF 250 Query: 247 VQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWD 304 S++ + ARKG+CLY +GCKGP TYN C +N+ ++P+ +GH C+GC+E FWD Sbjct: 251 APSFNSEEARKGWCLYDVGCKGPETYNNCPKVLFNE-TNWPVAAGHPCIGCSEPNFWD 307 >UniRef50_Q24X54 Hup-type Ni,Fe-hydrogenase small subunit n=3 Tax=Desulfitobacterium RepID=Q24X54_DESHY Length = 362 Score = 239 bits (609), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 135/365 (36%), Positives = 211/365 (57%), Gaps = 23/365 (6%) Query: 11 MRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALE---NKPRIPVVWIHGLECTCCTE 67 ++ +G++RR F+K + +LGL +AP+ A A+E KP PV+W+HG+ECT C+E Sbjct: 7 LQARGISRRDFMKLMAATTAALGLPEVLAPQAAKAVEAAMEKP--PVIWLHGMECTGCSE 64 Query: 68 SFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLG 127 S + + +P + ++L +S+ Y +T+MAA+G AE+ ++D + + K++L VEG+ P Sbjct: 65 SLLATLNPSIESLVLDTLSIRYHETIMAASGHVAEQAYQDTLDE---KFVLVVEGSVPAS 121 Query: 128 E-QGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPI------D 180 E +C+ G+PF E + AAA A A+IA G+CA+ G A P + PI Sbjct: 122 EATDSYCMVGGKPFRETVLEAAAKAQAVIAVGSCATDG---AGIPGACEIKPIGVRELLQ 178 Query: 181 KVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAH 240 K P+I +P CP P+ + I Y +TF +P++D RPL++YG+ +HD C RR Sbjct: 179 KHNIATPVINLPCCPVKPNTLIGTIVYYLTFSAVPELDEQARPLIYYGKLLHDNCPRRGQ 238 Query: 241 FDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAEN 300 F+AG F+ W +D A+K YCL GCKGP TY C+ WND +F I +G C GC+E+ Sbjct: 239 FEAGNFLSDW-NDPAQKDYCLLLKGCKGPKTYTDCAQVWWNDNANFCINAGSPCSGCSES 297 Query: 301 GFWDRGS-FYSRVVD--IPQMGTHSTADTVGLTALGVVAAAVGVHAVASAVDQRRRHNQQ 357 GF+ + S Y++ + +P +G ADTVG G +G H +A+ R ++N Sbjct: 298 GFYGQFSPLYAKQENFSLPGLG-QIHADTVGKVVGGATVVGLGAHLIATVASGRLKNNDS 356 Query: 358 PTETE 362 + E Sbjct: 357 EQKKE 361 >UniRef50_Q24VQ2 Ni,Fe-hydrogenase small subunit n=2 Tax=Desulfitobacterium hafniense RepID=Q24VQ2_DESHY Length = 319 Score = 234 bits (597), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 118/301 (39%), Positives = 180/301 (59%), Gaps = 7/301 (2%) Query: 5 ETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALE-NKPRIPVVWIHGLECT 63 E+ YQ + R+GV+RR FLK C+ +LG+ +AP+IA A E N + PV+W+ G CT Sbjct: 12 ESGYQRLARRGVSRRDFLKLCTFTCAALGIDLSLAPQIAEAAEANLSKKPVIWMQGQGCT 71 Query: 64 CCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGN 123 C+ES + S P +++IL L+S+ Y TLMAA+G QA + ED I Q G YIL +EG+ Sbjct: 72 GCSESLLSSVDPGPEEIILDLLSVRYHPTLMAASGEQAVQSLEDCIAQ--GHYILVLEGS 129 Query: 124 PPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVI 183 P + +C G+PFIE+ K AA A A+IA G+CA +G + R T A +V+ Sbjct: 130 IPTADS-RYCFVEGKPFIEQFKLAAEKAEAVIAVGSCACYGGI--PRAGFTGAAGAQEVL 186 Query: 184 TDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDA 243 ++ +P CP PD + ++ Y ++ + LP +D + RP +Y +HD CYRR H++ Sbjct: 187 EGVKVVNLPSCPVKPDRLVGLLLYYLSHNALPKLDGLNRPEAYYRYTLHDSCYRRWHYEK 246 Query: 244 GEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFW 303 GE+++ W++ +CLY GCKG TY C++ WN G +F +G C GC++ ++ Sbjct: 247 GEYLEDWNNPDTLD-WCLYHKGCKGQDTYTNCANAWWNGGANFCGYAGSPCAGCSQPEYY 305 Query: 304 D 304 D Sbjct: 306 D 306 >UniRef50_Q7VJP5 Putative uncharacterized protein n=3 Tax=Helicobacter RepID=Q7VJP5_HELHP Length = 552 Score = 232 bits (592), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 121/302 (40%), Positives = 176/302 (58%), Gaps = 14/302 (4%) Query: 6 TFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCC 65 T+ ++ + V S++ CSL +G+ A L KP +VW+H ECT C Sbjct: 20 TYKESRHKVNVQWVSYI--CSL----IGIPKEGVELCAQILSLKPPTRLVWLHLAECTGC 73 Query: 66 TESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPP 125 + SF+R P + V+L I+L+Y +T+M A G A++ + + + ++IL +EG Sbjct: 74 SSSFLRLDKPDIESVLLEYITLEYHETIMGAVGFSAKKSLHNTLDK---EFILVIEGGVS 130 Query: 126 LGEQGMFCISSGRPFI---EKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKV 182 LG F ++SG I E+ K A A AI A GTC+S+G VQAA PNPTQ+ ID Sbjct: 131 LGNHAHF-LTSGADSITGEEECKEVAQKAQAIFAVGTCSSFGGVQAAYPNPTQSIGIDSF 189 Query: 183 ITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFD 242 ++ + II +PGCPP + I Y + LP D + RP+ YG+ +HD C R+A F+ Sbjct: 190 LSQR-IINIPGCPPSEANIIGSILYYILLQELPPTDSLHRPIWSYGKNLHDMCERKAKFE 248 Query: 243 AGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGF 302 +G+FVQS+DD GYCLYK+GCKGP +N C ++N S+PIQ+GHGC+ C+E F Sbjct: 249 SGDFVQSFDDPHLEDGYCLYKVGCKGPYVFNNCPKVKFNAKTSYPIQAGHGCIACSEPDF 308 Query: 303 WD 304 WD Sbjct: 309 WD 310 >UniRef50_B9KFD7 Quinone-reactive Ni/Fe-hydrogenase, small subunit n=2 Tax=Campylobacter RepID=B9KFD7_CAMLR Length = 544 Score = 231 bits (590), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 107/259 (41%), Positives = 164/259 (63%), Gaps = 4/259 (1%) Query: 54 VVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYN 113 ++W+H ECT C+ES +R++ P D+I ISL+Y +T M+A+G QAE E+++ + + Sbjct: 63 LIWLHLSECTGCSESLLRTSLPDFLDLIFDFISLEYHETFMSASGHQAESHLEEVLEKKD 122 Query: 114 GKYILAVEGNPPLGEQGMFCI-SSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPN 172 ++LAVEG + I + G E L++ A A I A GTC+S+G +QAA PN Sbjct: 123 --FLLAVEGGVCAIDPFYLTIGAHGENGYEILQKCAKNAKTIFAMGTCSSFGGIQAAHPN 180 Query: 173 PTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIH 232 PT++ I KV+ +K +I +PGCPP + A + + + F++ +D RPL YG+ +H Sbjct: 181 PTKSIGISKVLEEK-VINIPGCPPSDANIIAALCFYILFEQDMALDDQNRPLALYGKCLH 239 Query: 233 DKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGH 292 D C R+A F+AG F QS+DD+ ++GYCL+K+GCKGP YN C ++N S+P+ +GH Sbjct: 240 DLCERKAKFEAGNFAQSFDDEKIKEGYCLFKVGCKGPYAYNNCPKVKFNSKTSWPVAAGH 299 Query: 293 GCLGCAENGFWDRGSFYSR 311 GC+ C+E FWD FY + Sbjct: 300 GCIACSEENFWDDFGFYEK 318 >UniRef50_UPI000197A0EB hypothetical protein HcinC1_01015 n=1 Tax=Helicobacter cinaedi CCUG 18818 RepID=UPI000197A0EB Length = 554 Score = 228 bits (582), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 115/295 (38%), Positives = 171/295 (57%), Gaps = 12/295 (4%) Query: 13 RQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFIRS 72 R V+ + C+L +G+ AP L KP +VW+H ECT C+ESF+R Sbjct: 25 RNEVSIEWVTQICNL----IGIPKDYAPLCEQILSYKPLTRLVWLHMAECTGCSESFLRL 80 Query: 73 AHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMF 132 P + ++L ISL+Y +T+M A G A++ D + + ++IL +EG LGE F Sbjct: 81 DKPGVESLLLEYISLEYHETIMGAVGFNAKQCLHDTLKE---EFILVIEGGVSLGENAYF 137 Query: 133 CISSGRPFIE---KLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPII 189 ++SG + A A AI A GTC+S+G VQAA PNPTQ+ I + +PI+ Sbjct: 138 -LTSGADSTNGENECLEVARHAQAIFAIGTCSSFGGVQAAYPNPTQSQGISTFLR-QPIV 195 Query: 190 KVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQS 249 +PGCPP M + Y + +P D + RPL YG+ +H+ C R+A F++G+FV+S Sbjct: 196 NIPGCPPSEANMIGSLMYYILLQEIPPCDSLNRPLWSYGKNLHEMCERKAKFESGDFVES 255 Query: 250 WDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWD 304 +DD+ + GYCLYK+GCKGP N C ++N S+P+++GHGC+ C+E FWD Sbjct: 256 FDDERLQDGYCLYKVGCKGPYVANNCPKVKFNAKTSWPVRAGHGCIACSEPDFWD 310 >UniRef50_Q31DZ5 Ni,Fe-hydrogenase small subunit n=4 Tax=Proteobacteria RepID=Q31DZ5_THICR Length = 813 Score = 227 bits (578), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 111/302 (36%), Positives = 177/302 (58%), Gaps = 3/302 (0%) Query: 19 RSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFIRSAHPLAK 78 + F + S+ +L L + ++++ ++PV+W+ +CT +E+FI++ +P Sbjct: 508 QDFNGWVSMMTLNLQLPPEYDNLVCRSIQHLNKVPVIWLELADCTGNSEAFIKTVNPTID 567 Query: 79 DVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCI--SS 136 ++IL ISLDY + LMAA+G +E + +I + G YIL VEG PLG G F Sbjct: 568 ELILKFISLDYHELLMAASGPHSETRLDQLIEEDQGDYILIVEGAVPLGMGGNFLRIGPQ 627 Query: 137 GRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPP 196 G LKR A ASA++A G+CA G V AA PNPT A + + + II +PGCP Sbjct: 628 GETGEALLKRVAQHASAVMAVGSCAFDGGVVAAAPNPTGAVGVSEALGRDDIINLPGCPV 687 Query: 197 IPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAAR 256 P + + + + F +P++ +P+ Y R+HD C RR H+DAGEFV+ W D+ A+ Sbjct: 688 NPINVVGTLLHYIMFAEMPELGDNNKPVWAYAPRVHDNCERRGHYDAGEFVKEWGDEGAK 747 Query: 257 KGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGF-WDRGSFYSRVVDI 315 KG+CL++MGCKGP C+ ++N+G S+P+Q GHGC+ C + +D + +V+++ Sbjct: 748 KGWCLFEMGCKGPYADMNCAQMKFNEGTSWPVQVGHGCIACGKGKVAFDEFANNRKVINV 807 Query: 316 PQ 317 P+ Sbjct: 808 PK 809 >UniRef50_Q5HT18 Hydrogenase, (NiFe)/(NiFeSe) small subunit family n=14 Tax=Campylobacter RepID=Q5HT18_CAMJR Length = 497 Score = 221 bits (564), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 111/286 (38%), Positives = 170/286 (59%), Gaps = 5/286 (1%) Query: 27 LAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLIS 86 + A L LG + + P+ +VW+H ECT C+ES +R+ P +++ S Sbjct: 38 ILARHLSLGNEIPALAQRFFQIAPKTKLVWLHLCECTGCSESLLRADLPSFDELVFDFFS 97 Query: 87 LDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCI-SSGRPFIEKLK 145 L+Y +TLMAA GT+AEE+ + +ILAVEG + I + G E L+ Sbjct: 98 LEYHETLMAANGTKAEEL---LEYVLEEDFILAVEGGVAAIDTFFLTIGAQGESGYEILE 154 Query: 146 RAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAII 205 + AA A AI A GTC+S+G +QAA PNP++ I +V++ K ++ +PGCPP + A + Sbjct: 155 KLAAKAKAIFAVGTCSSYGGIQAAYPNPSKTCGISEVLSQK-VVNIPGCPPSDINIIATL 213 Query: 206 TYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMG 265 ++ F LP++D RP+ YG+ +HD C R+A F++G F + +DD+AA+ G CL+K+G Sbjct: 214 SFFALFGVLPELDEQNRPVWAYGKCLHDICERKAKFESGIFAEHFDDEAAKNGACLFKIG 273 Query: 266 CKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYSR 311 CKGP TYN C ++N S+P+ +GHGC+ C+E FWD Y + Sbjct: 274 CKGPYTYNNCPKVKFNAKTSWPVAAGHGCIACSEKNFWDEFGNYEK 319 >UniRef50_C3XE47 Quinone-reactive Ni/Fe hydrogenase n=1 Tax=Helicobacter bilis ATCC 43879 RepID=C3XE47_9HELI Length = 593 Score = 217 bits (552), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 101/260 (38%), Positives = 152/260 (58%), Gaps = 3/260 (1%) Query: 46 LENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVF 105 LE + VVW+H ECT C+ES +R+ P + ++ + + Y D +M ++G A Sbjct: 59 LEYMGDLKVVWLHLQECTGCSESLLRTETPSFEVLLFDIFKIVYHDLVMVSSGHGAVAAL 118 Query: 106 EDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGC 165 E + KY+L VEG+ P+G + R +++ A A+ A GTC+S+G Sbjct: 119 EH--ANSHEKYVLLVEGSIPMGFAKDYITLGDRNGYDEISHLIHNAEAVFAIGTCSSFGG 176 Query: 166 VQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLM 225 +Q+A PNPT + ++ ++ II VPGCPP + A + Y F P +D + RPL Sbjct: 177 IQSAYPNPTNGHALSEIF-EREIINVPGCPPSDKNIVATLLYYYLFAESPSLDTLKRPLW 235 Query: 226 FYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVS 285 Y + +HD C R++ F AG+FV+S+DD ++GYCLYK+GCKGP TYN C ++N S Sbjct: 236 AYSKSVHDLCERKSSFMAGDFVESFDDSNMKEGYCLYKVGCKGPYTYNNCPKVKFNAKTS 295 Query: 286 FPIQSGHGCLGCAENGFWDR 305 +P+Q GHGC+GC+E FWD Sbjct: 296 WPVQGGHGCIGCSEPNFWDN 315 >UniRef50_C7MNR7 Hydrogenase (NiFe) small subunit HydA n=4 Tax=Coriobacteriaceae RepID=C7MNR7_CRYCD Length = 439 Score = 215 bits (548), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 129/369 (34%), Positives = 186/369 (50%), Gaps = 27/369 (7%) Query: 7 FYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENK-------PRIPVVWIHG 59 F + +GV+RRSFLK C + G P++A ALE PV+WI G Sbjct: 10 FEALLEARGVSRRSFLKLCGAVVAAAGASQLTIPQVADALEKSVIGAKEGKLYPVIWIEG 69 Query: 60 LECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILA 119 CT CTE+F + P ++L +ISL+Y +TL AAAG EE E I G YIL Sbjct: 70 ASCTGCTEAFAQVETPDPATIVLEMISLNYSETLSAAAGYSMEEAKEQTIEA--GNYILI 127 Query: 120 VEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPI 179 EG G +G+P E L AA A+A++A G+CA G A PN A + Sbjct: 128 YEGAVLEKWGGEALRVAGKPGTEHLLEAAPSANAVVALGSCAVNGGWMGANPNSAGAVGV 187 Query: 180 DKVITDK----PIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKC 235 +K + + P++ +PGCP P+ + A++ +V ++LP +D +P + + + IHD C Sbjct: 188 EKFLKESGINVPVVNIPGCPANPEWLVAVLVDVVMMNKLPALDYENKPALIFDETIHDNC 247 Query: 236 YRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCL 295 RR HF+ GEFV + + K YCLY MGC+GP T C R+N+ S+ +++G C+ Sbjct: 248 ERRGHFENGEFVYQFGSEEEAKNYCLYAMGCRGPQTKANCGIVRYNNRRSWCVEAGAPCI 307 Query: 296 GCAENGFWDRGSFYSRVVDIPQMGTH-----------STADTVGLTALGVVAAAVGVHAV 344 GC E D G + V+ P M H + A +GLTA +VAA + VH Sbjct: 308 GCCEAAPMDPGHNWVE-VNTPFMKRHRDLRIGDWTFQTEAVCLGLTA--IVAAGIAVHGF 364 Query: 345 ASAVDQRRR 353 R + Sbjct: 365 GIKASGRMK 373 >UniRef50_A1HLY8 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HLY8_9FIRM Length = 325 Score = 191 bits (485), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 109/318 (34%), Positives = 174/318 (54%), Gaps = 16/318 (5%) Query: 14 QGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKP--RIPVVWIHGLECTCCTESFIR 71 + +TRR FL+ C +LGL + +I A PVVW+ G C+ C+ S + Sbjct: 2 RNLTRRDFLRLCGATGAALGLSNVLHAEIVEAFSGPAAGHPPVVWLQGGSCSGCSVSLLN 61 Query: 72 SAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGM 131 S P V+ +ISL + TLMAAAG A V +++ +Y G+Y L VEG P+ G Sbjct: 62 SVAPDIGKVLTDIISLKFHQTLMAAAGEPAMAVLDEVRARYAGQYYLVVEGAVPVA-AGR 120 Query: 132 FCISSGR------PFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITD 185 + G PF +++++ AA A A++A GTCA++G + AA NPT + + V+ Sbjct: 121 HTATLGEHNGQPVPFADRVRQMAAKAKAVMAVGTCAAYGGIPAAGVNPTASKAVSAVVRG 180 Query: 186 KPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGE 245 P++ VPGCP PD + + +++ + +P++D++ RPLMF+G+ IHD C RR FD G Sbjct: 181 TPLVNVPGCPIHPDWVLGTLLHLIRYG-MPELDKLQRPLMFFGKSIHDICERRPDFDQGR 239 Query: 246 FVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDR 305 F + + CLYK+GCKGP + C+ ++N+G ++ + + CL C F D Sbjct: 240 FAKKLSEPG-----CLYKLGCKGPMAFGDCAERKFNNGANWCVGANSPCLSCTGPEFPDA 294 Query: 306 GS-FYSRVVDIPQMGTHS 322 + F+ ++ + GT S Sbjct: 295 SAPFFVKIKEYGPAGTPS 312 >UniRef50_D2BG44 Ni/Fe hydrogenase, small subunit n=5 Tax=Dehalococcoides RepID=D2BG44_DEHSV Length = 354 Score = 190 bits (482), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 114/351 (32%), Positives = 181/351 (51%), Gaps = 28/351 (7%) Query: 11 MRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWAL-ENKPRIPVVWIHGLECTCCTESF 69 M +TRR F++ + + +L LGA P+ E IPV+W+ G C CT S Sbjct: 1 MFNTKLTRRDFVQLAAGSTAALSLGALKLPEFEKMFAEALKEIPVIWLQGAGCNGCTIST 60 Query: 70 IRSAHPLAKDVILSLI------SLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGN 123 I P +D++L+ + S+ Y T+MAA G A D T G ++L +EG+ Sbjct: 61 INVVSPTIQDLLLTSVVPGTHVSMQYHPTIMAAQGDLAMSTITD--TAAKGPFVLVIEGS 118 Query: 124 PPLGEQGMFCI-----SSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATP 178 PL + G++ G +E + A A A++A GTC+++G + A+ PNPT A Sbjct: 119 VPLKDDGVYAEIGEKDGEGITMLEHVLNLAPKALAVVAAGTCSAFGGITASAPNPTGAKA 178 Query: 179 IDKVITD----KPIIKVPGCPPIPD-VMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHD 233 + +++ + P++ +PGCPP PD V+ + T +++ D+D MGRP +YG+ +HD Sbjct: 179 VSEILKEHNITTPVVNLPGCPPHPDWVVGTLATVLMSGLDALDLDDMGRPKAYYGKLLHD 238 Query: 234 KCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHG 293 +C RR H++ G F + YCL+ +GCKGP TY CS WN+ + +++ Sbjct: 239 QCPRRGHYEKGLFATKLSEP-----YCLFLVGCKGPVTYADCSDRLWNNKTRWCVEADSP 293 Query: 294 CLGCAENGFWDRGSFYSRVVDIPQMGTHSTADTVGLTALGVVAAAVGVHAV 344 C+GCA GF D S + + P + + +G+ VV A GV AV Sbjct: 294 CIGCAHPGFPDE---VSPMFEAPPVINSTDKLAIGIAGTAVVLTA-GVAAV 340 >UniRef50_A5D1L0 Ni,Fe-hydrogenase I small subunit n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D1L0_PELTS Length = 332 Score = 189 bits (481), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 109/303 (35%), Positives = 162/303 (53%), Gaps = 16/303 (5%) Query: 14 QGVTRRSFLKYCSLAATSLGLGAGMAPKI----AWALENKPRIPVVWIHGLECTCCTESF 69 G+TRR F+K C A L + P++ A A E KP PV+W+ G CT C+ S Sbjct: 1 MGLTRREFIKLCMTTAAGASLFTVIGPELQESLALAAEGKP--PVIWLQGASCTGCSISL 58 Query: 70 IRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQ 129 + S P + VIL +ISL Y + AA+G E+ ++++ + ++IL VEG PL Sbjct: 59 LNSVDPAIEKVILDVISLRYHPNISAASGHFVAEIMDEMLLSHKDQFILVVEGAIPLKND 118 Query: 130 GMFCI---SSGRP--FIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVIT 184 G +C +GR ++ ++ A A+IA G CAS+G + PNPT + KV+T Sbjct: 119 GKYCTIAEKNGREITMLKAVQVLGNAAKAVIAAGQCASYGGIPGGAPNPTGVVGVKKVVT 178 Query: 185 DKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAG 244 KP+I + CP PD + Y++ + +P +DR GRP MFY + IH+ C RR +FD+G Sbjct: 179 KKPVINISLCPMHPDHFLGTVVYILKYGDIPPLDRYGRPAMFYPKPIHESCLRRPYFDSG 238 Query: 245 EFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWD 304 F D+ CL +GCKG Y C WN+ V++ I++G C+ C+E F D Sbjct: 239 RFASFIGDEG-----CLALLGCKGFVGYADCPVRGWNNNVNWCIKAGAPCMACSEPTFPD 293 Query: 305 RGS 307 S Sbjct: 294 AAS 296 >UniRef50_P13063 Periplasmic [NiFeSe] hydrogenase small subunit n=10 Tax=Deltaproteobacteria RepID=PHSS_DESBA Length = 315 Score = 185 bits (469), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 105/316 (33%), Positives = 168/316 (53%), Gaps = 28/316 (8%) Query: 16 VTRRSFLKYCSLAATSLGLGAGMAPKIAWAL-ENKPRIPVVWIHGLECTCCTESFIRSAH 74 ++RR F+K CS LG+ P I A+ E + PV+W+ G CT C+ S + + H Sbjct: 3 LSRREFVKLCSAGVAGLGISQIYHPGIVHAMTEGAKKAPVIWVQGQGCTGCSVSLLNAVH 62 Query: 75 PLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCI 134 P K+++L +ISL++ T+MA+ G A +I ++NG + L VEG P ++G +CI Sbjct: 63 PRIKEILLDVISLEFHPTVMASEGEMALAHMYEIAEKFNGNFFLLVEGAIPTAKEGRYCI 122 Query: 135 ------SSGR----PFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVIT 184 + G +E ++ A + A +A GTC+++G + AA N T + + Sbjct: 123 VGETLDAKGHHHEVTMMELIRDLAPKSLATVAVGTCSAYGGIPAAEGNVTGSKSVRDFFA 182 Query: 185 DKPI----IKVPGCPPIPDVMSAII------TYMVTFDRLPDVDRMGRPLMFYGQRIHDK 234 D+ I + VPGCPP PD M + T LP++D GRPL+F+G IH+ Sbjct: 183 DEKIEKLLVNVPGCPPHPDWMVGTLVAAWSHVLNPTEHPLPELDDDGRPLLFFGDNIHEN 242 Query: 235 CYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGC 294 C +D EF +++ K C ++GCKGP+TY C+ RWN+G+++ +++ C Sbjct: 243 CPYLDKYDNSEFAETF-----TKPGCKAELGCKGPSTYADCAKRRWNNGINWCVENA-VC 296 Query: 295 LGCAENGFWD-RGSFY 309 +GC E F D + FY Sbjct: 297 IGCVEPDFPDGKSPFY 312 >UniRef50_Q6ARY6 Related to periplasmic [NiFeSe] hydrogenase, small subunit [Precursor] n=1 Tax=Desulfotalea psychrophila RepID=Q6ARY6_DESPS Length = 300 Score = 174 bits (440), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 106/304 (34%), Positives = 157/304 (51%), Gaps = 17/304 (5%) Query: 16 VTRRSFLKYCSLAATSLGLGAGMAPKIAWALE--NKPRIPVVWIHGLECTCCTESFIRSA 73 +TRR FL+ + + LGLG+ P++A ALE R V+W+ C+ C+ S + S Sbjct: 4 LTRRQFLELSAKMSVVLGLGSSAIPQVAEALEALTTGRSKVLWLQAQSCSGCSISMLDSE 63 Query: 74 HPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFC 133 P +++ ISL + TL AA G + + Q G YIL VEG+ P G C Sbjct: 64 SPGPAELLTQYISLLFHHTLSAATGESCMHIVRKSVQQ--GGYILVVEGSIPAGMPEA-C 120 Query: 134 ISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVI----TDKPII 189 + G P E +K+AA A +IA GTCA++G + AA NPT A P+ + PII Sbjct: 121 MMGGIPVGELIKQAAERADYVIALGTCAAFGGIPAAEGNPTGAVPLGPFLQANKIKTPII 180 Query: 190 KVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQS 249 +PGCP PD + + ++ F LP D RP MF+ + HDKC R + ++ F + Sbjct: 181 NIPGCPSHPDWLVGTLVHLCKFG-LPPCDEQRRPKMFFASKNHDKCPRFSDYEQENFARK 239 Query: 250 WDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGS-- 307 + D CL+K+GC G +TY C+ N G + I++G C+GC+ F + S Sbjct: 240 FSDPG-----CLFKLGCLGVSTYADCTIRDRNGGTNACIKAGAPCIGCSSPQFAQKKSLP 294 Query: 308 FYSR 311 FY + Sbjct: 295 FYRK 298 >UniRef50_B1I618 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Clostridiales RepID=B1I618_DESAP Length = 375 Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 102/313 (32%), Positives = 165/313 (52%), Gaps = 15/313 (4%) Query: 47 ENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFE 106 E + P+VW+ C S + HP + ++ L+ + + +TLM A G QA EV E Sbjct: 49 ERLEKHPLVWLETNTCHGNILSLMNGQHPDFEAIMRELLDVYWTNTLMGAKGHQAIEVLE 108 Query: 107 DIITQYNGKYILAVEGNPPLGEQGMFC----ISSGRPFI--EKLKRAAAGASAIIAWGTC 160 ++ + G YIL VEG P G + +G P+ + + AA A ++A G+C Sbjct: 109 KVMVERPGDYILVVEGTVPTAAGGRYAHIGLRGNGEPWTAWDAVVELAAAAKHVVAVGSC 168 Query: 161 ASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRM 220 A+WG A PNPT + P+ V+ D+ +I VPGCP PD + + +++ + +P++D M Sbjct: 169 AAWGLPFGAHPNPTGSKPVSAVV-DRTVINVPGCPAHPDWILGTLAHLIWYG-VPELDAM 226 Query: 221 GRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRW 280 RP++FYG+ IH+ C RR +F++G F + +CLYK+GCKGP TY C S +W Sbjct: 227 NRPVVFYGETIHNLCQRRHYFESGIFAGEIGEP-----WCLYKIGCKGPVTYADCPSRQW 281 Query: 281 -NDGVSFPIQSGHGCLGCAENGFWDRGS-FYSRVVDIPQMGTHSTADTVGLTALGVVAAA 338 + +++P+ + C+GC F + + F+ + D+ G TAD VG A Sbjct: 282 CGEHMNWPVGANTPCIGCTSPEFLEHTAPFFEHLPDVRLPGVRVTADRVGAATGLAAALG 341 Query: 339 VGVHAVASAVDQR 351 +G+H + R Sbjct: 342 IGLHLTGKLLTGR 354 >UniRef50_D2RD73 Hydrogenase (NiFe) small subunit HydA n=3 Tax=Archaeoglobaceae RepID=D2RD73_ARCPR Length = 352 Score = 168 bits (426), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 117/362 (32%), Positives = 190/362 (52%), Gaps = 32/362 (8%) Query: 16 VTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFIRSAHP 75 ++RR+FLK S L A + + K + W++G CT CT SF +SA P Sbjct: 3 LSRRNFLKLVGAMGASTFLTTCKADLVKALEDVKDYWHICWLNGAACTGCTISFAQSADP 62 Query: 76 ---------LAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPL 126 L + L + DY +T+ A+GT AEE+ E K IL VEG + Sbjct: 63 DLVQILTEILVGNSGLPIALPDYMETIHVASGTLAEELKERWRQSKRAK-ILIVEG--AV 119 Query: 127 GEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARP-----NPTQATPID- 180 ++G FC G+ F E LK AA A IIA G CA++G + A+P NPT A + Sbjct: 120 QDEG-FCTIHGKDFREHLKEAAEVADYIIAVGQCATYGGIPGAKPWDGEPNPTGAKGVQD 178 Query: 181 ---KVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDK-CY 236 +V +K +I +P CP PD + + ++ +P++D+ GRP +F+G+ +H++ C Sbjct: 179 FLYEVGINKTVINIPCCPAHPDHIIVTLASLM-LGVVPELDKYGRPKVFFGKNMHNELCP 237 Query: 237 RRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLG 296 R ++D G F+ ++ C +KMGCKGP C+ +WN+G S+ +++ + C+G Sbjct: 238 YRPYYDRGIFITKPGEEG-----CRFKMGCKGPICNTDCAIRKWNNGTSYCVET-NICIG 291 Query: 297 CAENGFWDRGS-FYSRVVDIPQMGTHSTADTVGLTALGVVAAAVGVHAVASAVDQRRRHN 355 CAE G+ D+ S FY+ V ++P++ A+T+G LG +G+HAV ++ + Sbjct: 292 CAEPGWPDKFSPFYAEVPELPRV-LGVGAETIGAGLLGATLLGIGIHAVRHLGAKKHKKE 350 Query: 356 QQ 357 ++ Sbjct: 351 EE 352 >UniRef50_A5I2W4 Hydrogenase small subunit n=13 Tax=Firmicutes RepID=A5I2W4_CLOBH Length = 290 Score = 168 bits (426), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 85/259 (32%), Positives = 148/259 (57%), Gaps = 15/259 (5%) Query: 51 RIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIIT 110 ++ +W+ C+ S + + +P ++ ++++L ++++LM A G E +E + Sbjct: 34 KVNAIWLEVTGCSGNIISLLNAENPGLIYILRNIVNLTFNNSLMGAEG---EFAYEQFLN 90 Query: 111 QYNGKYILAVEGNPPLGEQGMFCISS---GRPF--IEKLKRAAAGASAIIAWGTCASWGC 165 + ++IL V+G E G + I + GRP +E +K A A ++ GTC+S+G Sbjct: 91 TLDTEFILLVDGAVSTKENGYYNIIANYRGRPVTALEAIKMAGEKAKYVVTVGTCSSYGG 150 Query: 166 VQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLM 225 + AA+PNP+ + +D VI +K +IK+PGCP PD + + ++VT+ + P++D GRP++ Sbjct: 151 ISAAKPNPSGSKSVDAVI-NKEVIKLPGCPCHPDWVVGTLAHLVTYGK-PELDNKGRPIL 208 Query: 226 FYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVS 285 FYG IHD C RR FD F + + ++ C++K+GC+GP T C +WN V+ Sbjct: 209 FYGITIHDSCTRRGFFDKRIFAKKFGEEG-----CMFKLGCRGPVTKTDCPRRKWNGYVN 263 Query: 286 FPIQSGHGCLGCAENGFWD 304 +PI C+GCA+ F D Sbjct: 264 WPIGDNTNCIGCAQERFPD 282 >UniRef50_B8FWY3 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Desulfitobacterium hafniense RepID=B8FWY3_DESHD Length = 375 Score = 167 bits (424), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 102/349 (29%), Positives = 175/349 (50%), Gaps = 15/349 (4%) Query: 16 VTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKP--RIPVVWIHGLECTCCTESFIRSA 73 + RR FLK A + + P++ AL ++P++ + CT + S Sbjct: 2 LNRREFLKLVVKGAILGNFISLVTPELEKALAQGEINKLPIIMVETGTCTGDSISLDNIW 61 Query: 74 HPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFC 133 P D+ ++ YD T+M + G A +V +I +++L V+G+ + G + Sbjct: 62 SPTLSDIFTNITEWRYDWTMMQSQGELAYDVLLEIEKNQAHEFVLLVQGSMIRRDGGHYN 121 Query: 134 ---ISSGRPF--IEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI 188 + +G+ ++ ++R A ++A G CA++G A PNPTQ+T + ++ ++ + Sbjct: 122 YAGLENGQLITGLDLVRRLGLKAKYVVAVGHCATYGGPVAGYPNPTQSTGVQNILPERRV 181 Query: 189 IKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQ 248 I V GCP PD + + ++ + P++++ GRP MF+G+ IH+ C RR ++D G F Sbjct: 182 INVSGCPAHPDWIMGTLLHLALYGE-PELEKFGRPKMFFGETIHNNCPRRRYYDQGIFAT 240 Query: 249 SWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGS- 307 D +K CLY++GCKGP TY C RWND ++PI C+GC E G+ D Sbjct: 241 ----DIGQK-ECLYRVGCKGPVTYADCPIRRWNDHYNWPIGCNSPCIGCTEPGYPDLMEP 295 Query: 308 FYSRVVDIP-QMGTHSTADTVGLTALGVVAAAVGVHAVASAVDQRRRHN 355 F + DIP G+ + D +G LG+ +G + ++S R N Sbjct: 296 FTAHFPDIPFPGGSRAATDRIGRGVLGLATLGIGGYFLSSFYKGRLHRN 344 >UniRef50_B8HZS9 Hydrogenase (NiFe) small subunit HydA n=3 Tax=Clostridium RepID=B8HZS9_CLOCE Length = 299 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 88/260 (33%), Positives = 141/260 (54%), Gaps = 15/260 (5%) Query: 51 RIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIIT 110 R +VW+ C+ S + A+P K +I + + YD++L+AA G E+ E ++ Sbjct: 35 RRNLVWLELTGCSGNIISLLDGANPDFKYLISQMTNFLYDNSLVAAEG---EKAMEKLMG 91 Query: 111 QYNGKYILAVEGNPPLGEQGMFCIS---SGRPF--IEKLKRAAAGASAIIAWGTCASWGC 165 +YILAVEG GM+ + G+P + +K AS +IA G CAS G Sbjct: 92 SIGDEYILAVEGAVATKNNGMYNVIGRWQGKPVTALNAIKLLGEKASYVIALGACASHGG 151 Query: 166 VQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLM 225 V AA+PNP+ + ++ K +IK+PGCP PD + +++ + P++D RP++ Sbjct: 152 VSAAKPNPSDCVSVQSILNRK-VIKLPGCPCHPDWFMGTLAHILLYGE-PELDNRDRPVL 209 Query: 226 FYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVS 285 FY IHD+C RR+ FD G F + + C++K+GC+GP T C +WN V+ Sbjct: 210 FYSTLIHDRCPRRSFFDKGIFAKKLGEST-----CMFKLGCRGPVTRIDCPIRKWNQYVN 264 Query: 286 FPIQSGHGCLGCAENGFWDR 305 +P++ C+GCA+ GF D+ Sbjct: 265 WPVEDDTPCIGCAQFGFPDQ 284 >UniRef50_C8S958 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Ferroglobus placidus DSM 10642 RepID=C8S958_FERPL Length = 355 Score = 154 bits (388), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 105/363 (28%), Positives = 181/363 (49%), Gaps = 33/363 (9%) Query: 18 RRSFLKYCSLAATSLGLGAGMAPKIAWALE-----NKPRIPVVWIHGLECTCCTESFIRS 72 RR F+K A T+LG A ++ ++ +E + +VW+ G + CT S +++ Sbjct: 5 RRGFVK----ALTTLGAAAFLSKYKSFIVEAFEEAKSNDVKLVWLQGQSDSACTVSLLQA 60 Query: 73 AHPLAKDVILSL-ISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGM 131 A P D + L + + + T+M G +A +V E+I +L +EG+ P G+ Sbjct: 61 ADPDLYDAVEELKVGIYFHPTVMPDFGDKAIKVLEEIEPD-----VLVLEGSIPTGDMEY 115 Query: 132 FCI---SSGRP--FIEKLKRAAAGAS-AIIAWGTCASWGCVQAAR----PNPTQATPIDK 181 C +G+P +E L A++ +G+CA++G + +A+ +PT A + + Sbjct: 116 ACTFGERNGKPVTLVEWLNELIPKTKVAVVGFGSCATYGGIPSAKDFEGKSPTNAVGLYQ 175 Query: 182 VITDK----PIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYR 237 + DK P++ +PGCP PD + + ++ ++ D+D RP F+ Q IHD C R Sbjct: 176 FLKDKKPAVPVVLLPGCPGHPDWLLVTLAAVLLGVKV-DLDDYWRPKWFFSQLIHDNCAR 234 Query: 238 RAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGC 297 R +D G F +S+++ + CL+K+GC+GP TY ACS T+WN GV+ + +G C+GC Sbjct: 235 RGFYDEGWFAKSFEESDLKYETCLFKLGCRGPMTYAACSETKWNGGVNVCMNAGAPCIGC 294 Query: 298 AENGFWDRGSFYSRVVDIPQMGTHSTADTVGLTALGVVAAAVGVHAVASAVDQRRRHNQQ 357 GF D S + + ++ TV T G V G + V A+ + + + Sbjct: 295 MHPGFPDETSPFFKEQSRLEI---DLTKTVFSTLTGAVLVGAGAYIVTHAIKEGKEDKKG 351 Query: 358 PTE 360 E Sbjct: 352 GEE 354 >UniRef50_B2TM84 [Ni/Fe] hydrogenase, small subunit n=2 Tax=Clostridium botulinum RepID=B2TM84_CLOBB Length = 313 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 89/264 (33%), Positives = 139/264 (52%), Gaps = 16/264 (6%) Query: 48 NKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFED 107 NK +I +W+ C S + S P V+ +L+++ + ++ G Q E+ +E Sbjct: 47 NKEKINAIWLETSGCFGEVISLLNSEMPDLPFVLKNLVNMTFFGSI---CGDQGEKAYER 103 Query: 108 IITQYNG--KYILAVEGNPPLGEQGMFCISS---GRPF--IEKLKRAAAGASAIIAWGTC 160 I+ N +YIL V G P+ G++ + + GR +E +K+AA A II+ GTC Sbjct: 104 ILDTLNSDKEYILLVCGAIPINADGLYTVLATYQGRKITAMELVKQAAQKAKYIISIGTC 163 Query: 161 ASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRM 220 A +G AA+PN +QA + + + II +PGCP P + Y++ + + D+D Sbjct: 164 ACYGGPTAAKPNVSQALSVKEYLMRNDIINIPGCPANPVWTLGTVGYLINYGTI-DLDEE 222 Query: 221 GRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRW 280 GRP+ FYG+ IH+ C +R FD G F + + CLY++GCKGP T C +RW Sbjct: 223 GRPVAFYGKTIHEICPKRKFFDKGIFAKKLGNPE-----CLYELGCKGPITKVYCPISRW 277 Query: 281 NDGVSFPIQSGHGCLGCAENGFWD 304 N ++PI C+GCA GF D Sbjct: 278 NQSDNWPIGDRTPCIGCARKGFPD 301 >UniRef50_B8D1R7 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Halothermothrix orenii H 168 RepID=B8D1R7_HALOH Length = 334 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 88/265 (33%), Positives = 133/265 (50%), Gaps = 12/265 (4%) Query: 48 NKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFED 107 N ++PV+WI + SF+ + +P V +I L Y +T MAA G A ++ + Sbjct: 36 NGKKLPVIWIETNDSGDNNISFMNTTYPYLDQVFEDIIDLYYSNTFMAAQGEDAYQILKK 95 Query: 108 IITQYNGKYILAVEGNPPLGEQGMF---CISSGRPF--IEKLKRAAAGASAIIAWGTCAS 162 + + ++ L VEG PL G + I+ P +E ++ A +A GTCAS Sbjct: 96 VALREKREFTLVVEGAIPLKANGRYNITFITDEGPVTAVELVRWLGELAKYAVAVGTCAS 155 Query: 163 WGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGR 222 +G AA PN T + + V+ D+ II V GCP PD + ++ + LPD+DR+GR Sbjct: 156 FGGASAASPNITGSVALGDVL-DRQIINVSGCPINPDWFVGTLAHLQMYG-LPDLDRLGR 213 Query: 223 PLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWND 282 P +FY +H C RR++FD G F + D C++ GC GP T C W++ Sbjct: 214 PELFYQFTVHRHCQRRSYFDDGNFAEELGDIE-----CMFSQGCVGPRTGADCPYRLWDN 268 Query: 283 GVSFPIQSGHGCLGCAENGFWDRGS 307 VS+PI+ C+GC F D S Sbjct: 269 HVSYPIKVNTPCIGCTNEDFPDGSS 293 >UniRef50_Q1NM22 Ni-Fe hydrogenase, small subunit n=3 Tax=Deltaproteobacteria RepID=Q1NM22_9DELT Length = 343 Score = 147 bits (372), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 97/328 (29%), Positives = 153/328 (46%), Gaps = 24/328 (7%) Query: 12 RRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAW-------ALENK-PRIPVVWIHGLECT 63 R Q +RR FLK + AG AP +++ EN PR +VW+ G C+ Sbjct: 12 RMQICSRREFLKKIYRVVVA----AGAAPLLSFDELLAAEGGENPFPRPNLVWLQGASCS 67 Query: 64 CCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGN 123 C+ S + + D++ L Y TL A G Q ++ + T Y+L +EG Sbjct: 68 GCSLSLLNTEEITVLDLLTRFSRLLYHPTLAQATGNQVTDLLTKLTTGVE-PYLLVLEGG 126 Query: 124 PPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVI 183 P G C+ + RPF E + R A GA A +A GTCA++G V A T +D+ + Sbjct: 127 IPAG-MPHACLLAHRPFEEWVSRLAQGADACVAVGTCAAFGGVAAMPGTLTGVVSLDRHL 185 Query: 184 TDK----PIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRA 239 + P++ +P CP P+ + + + RLP++D GRP F+ +H +C R A Sbjct: 186 ATRDIAVPLVNLPSCPMKPEHLVYTLLHYGRHRRLPELDGRGRPRRFFANTVHQRCPRYA 245 Query: 240 HFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAE 299 F +F + +D CL ++GC+GP + N C +N +++ +++GH C GCA Sbjct: 246 AFQELDFARHIGEDG-----CLLELGCQGPVSNNDCPDLGYNGNLNYCLKAGHPCTGCAG 300 Query: 300 NGFWDRGSFYSRVVDIPQMGTHSTADTV 327 + R Y D G DT+ Sbjct: 301 E-LFPRPVLYHLYDDPRLKGGLLQGDTI 327 >UniRef50_C1SPM4 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SPM4_9BACT Length = 310 Score = 143 bits (361), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 87/290 (30%), Positives = 150/290 (51%), Gaps = 16/290 (5%) Query: 16 VTRRSFLKYC-SLAATSLG---LGAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFIR 71 ++RR FLK C ++A G GA +A +++ R +V+I G CT C+ S + Sbjct: 2 LSRRDFLKRCRDISAVVFGAEVFGAQIAEGF-MKIQSADRPQLVFIQGQSCTGCSTSLMY 60 Query: 72 SAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGM 131 D I+ L+ + L + G + +++ + G +IL +EG+ P E Sbjct: 61 GNETDFIDFIMKLVRVQVHPNLSLSQGNGYLNMLDEVTSA--GGHILVLEGSIP-AEMKK 117 Query: 132 FCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITD----KP 187 C+ P + LK+ ASA++A G+C+ +G + A+ N T A I + + + KP Sbjct: 118 ACMLGEEPLYDALKKHLEKASAVVASGSCSCFGGIPASGANETGAIDIVQYMRETGISKP 177 Query: 188 IIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFV 247 +IK+PGCP PD + + Y++ ++PD++ G P+ ++G IH+ C R +F ++ Sbjct: 178 LIKIPGCPVHPDRLMGTVAYILGAGKMPDMED-GIPVQYFGDLIHNNCTRFQYFSQDIYL 236 Query: 248 QSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGC 297 + + D K CL K GC+G T + C+ RWN GV+ ++S C+GC Sbjct: 237 EDYAKD---KHSCLLKKGCRGTITKSDCALRRWNGGVNVCVESNAPCVGC 283 >UniRef50_Q1NRB7 Ni-Fe hydrogenase, small subunit:Twin-arginine translocation pathway signal n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NRB7_9DELT Length = 299 Score = 140 bits (353), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 93/292 (31%), Positives = 148/292 (50%), Gaps = 14/292 (4%) Query: 16 VTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIP-VVWIHGLECTCCTESFIRSAH 74 + RR+FLK + A + G+ G+ +A AL+ ++P ++++ GL CT C+ S +++A Sbjct: 1 MDRRNFLKMAAALAAAFGV-RGLPEPVAAALKEIDQVPKILYLQGLSCTGCSISLLQAAS 59 Query: 75 PLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCI 134 P ++I L + L + +G QA E+ I G+Y LA+EG P G C+ Sbjct: 60 PTPLEMITDYSQLAFHTDLSSTSGAQAMELINAFIDGEAGEYFLAIEGAVP-GTMPRACV 118 Query: 135 SSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKP----IIK 190 +PF L+RAA S +A G+CA G + AA NPT A + + + +I Sbjct: 119 IDHQPFASYLERAARTMSGAVAVGSCACDGGIPAAEGNPTGAIGLREFYRQRELEPLLID 178 Query: 191 VPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSW 250 + GCP PD + IT++V LP + G P F+ +R+H+ C R F F + Sbjct: 179 IRGCPIHPDWLWHTITHLVKVG-LPSLVN-GAPQAFFQRRLHELCPRYYDFQEEIFAEKM 236 Query: 251 DDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGF 302 + CL+K+GC GP T+ C + WN G ++ I + C+GCA F Sbjct: 237 GERG-----CLFKLGCLGPITFADCPTRWWNGGRTWCIDTNAPCIGCASPDF 283 >UniRef50_Q0W5V7 F420-nonreducing hydrogenase (Membrane-bound), small subunit n=2 Tax=Euryarchaeota RepID=Q0W5V7_UNCMA Length = 388 Score = 137 bits (346), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 110/337 (32%), Positives = 159/337 (47%), Gaps = 43/337 (12%) Query: 39 APKIAWALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLIS----LDYDDTLM 94 +P +A A+ + R ++W+ G C CT SF+ +P DV+ +L S + Y D LM Sbjct: 36 SPGVAAAIADS-RKKLLWLRGSGCGGCTASFLNGGYP---DVLAALDSVGAVITYHDGLM 91 Query: 95 AAAGTQAEEVFE-----------DIITQYNGKYILAVEGNPPLGEQGM--FCISSGRPFI 141 A G + V + D++ +G Y+L VEG P G G +C + GR Sbjct: 92 AQQGITLDGVSKTPDTYNALKKLDLLID-SGDYVLVVEGAIPNGPDGTGKYCTTGGRAVK 150 Query: 142 EKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPI--------DKVITD----KPII 189 E AA A IIA GTCA++G + +A + T A + + ++++ K +I Sbjct: 151 EIFSEAAEKAETIIALGTCAAFGGISSAGRSVTDARGVAYTGASRFNGILSELNMRKKVI 210 Query: 190 KVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQR-IHDKCYRRAHFDAGEFVQ 248 VPGCP PD + +++ + VD RP F+ + IHD C RR +D G+ Sbjct: 211 NVPGCPAHPDWFLLTLADVLSGAEVT-VDDYRRPAAFFSKSAIHDTCTRRGSYDQGQ--- 266 Query: 249 SWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGF-WDRGS 307 D A +G CLY GCKG TY C RWN GVS +G C+GC E F Sbjct: 267 -RDTQFAGEG-CLYGAGCKGMITYADCPVRRWNGGVSTCTLAGGPCVGCVEAEFPGAFMP 324 Query: 308 FYSRVVDIPQMGTHSTADTVGLTALGVVAAAVGVHAV 344 F++RV D + + + D LG GVHAV Sbjct: 325 FFNRVEDRSLI-SGTNVDLGAKVILGAAILGAGVHAV 360 >UniRef50_D1TP47 Ni Fe-hydrogenase I small subunit-like protein n=1 Tax=Burkholderia sp. CCGE1002 RepID=D1TP47_9BURK Length = 303 Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 55/87 (63%), Positives = 68/87 (78%) Query: 241 FDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAEN 300 F G ++WDD+AAR+GYCLYK+GCKGPTTYNACS+ RWN G SFPIQ+GHGC+GC+E Sbjct: 180 FRRGPVRRAWDDEAARRGYCLYKVGCKGPTTYNACSTVRWNRGTSFPIQAGHGCIGCSEE 239 Query: 301 GFWDRGSFYSRVVDIPQMGTHSTADTV 327 GFWD+GS Y R+ I Q G + AD + Sbjct: 240 GFWDKGSIYDRLTRIDQFGVEANADKI 266 >UniRef50_C8R2V0 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R2V0_9DELT Length = 305 Score = 134 bits (336), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 81/253 (32%), Positives = 127/253 (50%), Gaps = 12/253 (4%) Query: 54 VVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYN 113 ++++ GL CT C+ S +++ P +I L + L A +G QA E+ I Sbjct: 42 LLYLQGLSCTGCSISLLQADSPSPLSMITDYSQLVFHTDLSATSGAQAMELINSFIDGQA 101 Query: 114 GKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNP 173 G Y+LA+EG P G CI +PF + L+RAA S +A G+CA G + AA NP Sbjct: 102 GDYVLAIEGAIPAGMPEA-CIIDHKPFADYLERAARTMSGAVAIGSCACDGGIPAAEGNP 160 Query: 174 TQATPIDKVITDK----PIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQ 229 T A + + ++ P+I + GCP PD + IT++V V+ G P +F+ + Sbjct: 161 TGAVGLAEFYRNRNINQPVINIRGCPVHPDWVWHTITHLVLVGNPNLVN--GSPRVFFER 218 Query: 230 RIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQ 289 R+H+ C R F F + D CL+++GC GP T+ C + WN G ++ + Sbjct: 219 RLHELCPRYYDFQEEIFAEKLGDRG-----CLFRLGCLGPITFADCPTRWWNGGRTWCVD 273 Query: 290 SGHGCLGCAENGF 302 + C+GCA F Sbjct: 274 TNAPCIGCASPKF 286 >UniRef50_Q46BG0 Methanophenazine-reducing hydrogenase, small subunit n=9 Tax=Methanosarcina RepID=Q46BG0_METBF Length = 411 Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 103/339 (30%), Positives = 159/339 (46%), Gaps = 54/339 (15%) Query: 8 YQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTE 67 ++ + + RR+F+K + SL L +A ALE VVW+HG+ + CT Sbjct: 15 FKNLDFMKMDRRTFIKAVGVLGASLFLQT-YKNDLAKALEFS-ETKVVWLHGVMDSGCTI 72 Query: 68 SFIRSAHPLAKDVILSL----ISLDYDDTLMAAAGT------------QAEEVFEDIITQ 111 S + P D+I L + L Y + LM G +E V +DI+ + Sbjct: 73 SMLDGGSP---DIIEFLQEYNLKLLYHEVLMMQQGIFVDGKLANTSDLNSEIVLDDILEK 129 Query: 112 YNGKYILAVEG---NPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQA 168 G Y+L EG N P G G + + GR + E +AA A AI+A G CA+ G V + Sbjct: 130 EKG-YVLVSEGAISNGPEG-SGKYLMLGGRTYKEIYAKAAKNALAIVAIGNCATNGGVNS 187 Query: 169 ARPNPTQATP---------------IDKVITDKPIIKVPGCPPIPD-VMSAIITYMVTFD 212 A+ + + +D + +KP+I + GCP PD V I ++ Sbjct: 188 AKSDIVELMDPRGVAFTMEDASKGILDLLGIEKPVINLTGCPTHPDWVFLTIGAVVLGKI 247 Query: 213 RLPD-----VDRMGRPLMFY--GQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMG 265 ++PD +D RP +F+ IHD C RR ++D GEF + CL+K+G Sbjct: 248 KIPDDLPYVLDHWKRPKVFFPPDHVIHDNCSRRGYYDRGEF-----ELTVGGPKCLWKLG 302 Query: 266 CKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWD 304 CKGP T+ C++ WN +++ Q+G C+GC + GF D Sbjct: 303 CKGPYTHADCATRNWNGHLNYCPQAGSPCIGCVQPGFPD 341 >UniRef50_B9L9V0 Hydrogenase n=1 Tax=Nautilia profundicola AmH RepID=B9L9V0_NAUPA Length = 306 Score = 114 bits (284), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 82/313 (26%), Positives = 140/313 (44%), Gaps = 20/313 (6%) Query: 18 RRSFLKYCSLAATSLGLGAGMAPKIAWAL-ENKPRIPVVWIHGLECTCCTESFIRSAHPL 76 RR FLK ++G + + A E R ++W+ L C C+ +F+ + P+ Sbjct: 3 RREFLKNVHNLLVAIGGSSFFTMEELEAFDETDDRPDIIWLQALSCDGCSVNFLNAEIPV 62 Query: 77 AKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNG-KYILAVEGNPPLGEQGMFCIS 135 +++ ++ + T+MA+ G +A DI+ Y IL VEG P C+ Sbjct: 63 T-EILNRFANIVFHPTIMASDGKEAM----DILMNYKSDNMILVVEGAIPTAMPHA-CMM 116 Query: 136 SGRPFIEKL-KRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVI----TDKPIIK 190 G F+ + + A A AI+A GTCA++ + + T+A + + + P++ Sbjct: 117 -GEMFVNDIILKKAKEAKAIVAAGTCATFAGICDMKNMYTKAGSVKYFLETNNINTPVVN 175 Query: 191 VPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSW 250 +P CP P + + Y + LP +D RP+ F+ IH++C + F + Sbjct: 176 LPTCPMKPKHLLYTLFYYIKHKSLPPLDMSHRPIKFFSNTIHERCIYYNDYQQNIFAKKI 235 Query: 251 DDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYS 310 D CL+K+GC+GP T N C + I+SGH C+GC F R + Sbjct: 236 GDRG-----CLFKLGCQGPVTKNDCVKSTGEYDKYNCIKSGHPCVGCGSENF-PRTIMFK 289 Query: 311 RVVDIPQMGTHST 323 R D ++ + T Sbjct: 290 RSDDKREIEKYKT 302 >UniRef50_D2QHS8 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QHS8_9SPHI Length = 326 Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 75/269 (27%), Positives = 126/269 (46%), Gaps = 27/269 (10%) Query: 54 VVWIHGLECTCCTESFIRSAHPLAKDVILSL-ISLDYDDTLMAAAGTQAEEVFEDIITQY 112 V+W+ G C+ T SF+ + P D++ +++ + ++ G Q + DI++ Sbjct: 4 VLWLQGGACSGNTMSFLNAEEPTVVDLVTDFGVNILWHPSIGLEIGDQVTHLLNDIVSGR 63 Query: 113 NGKYILAVEGNPPLGEQGMFCIS--SGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAAR 170 IL EG+ G G ++ + RP + ++ + ++A G CA+WG + A Sbjct: 64 TQCDILVYEGSIIQGPNGTGTMNYFADRPMQDWVRDLSKVVGYVVAIGDCATWGGIPAVA 123 Query: 171 PNPTQATPIDKVITDK--------------PIIKVPGCPPIPDVMSAIITYMVTFDRLPD 216 PNP+++T + + K P+I +PGCP PD ++ I+ + T R+ D Sbjct: 124 PNPSESTGMQFLKKAKGGFLGSDYVSKGGLPVINIPGCPAHPDWITQILVAIAT-GRIGD 182 Query: 217 V--DRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCL-YKMGCKGPTTYN 273 V D RP F+ + C F Q D ++G CL Y++GC+GP T Sbjct: 183 VLIDEYHRPKTFFTDFVQTGCTNVV-----SFAQKVDGGFGKRGGCLFYEVGCRGPMTRA 237 Query: 274 ACSSTRWNDGVSFPIQSGHGCLGCAENGF 302 +C+ WN S ++ H CLGC E GF Sbjct: 238 SCNRILWNRQSS-KTRANHPCLGCTEPGF 265 >UniRef50_A1RXR6 Hydrogenase (NiFe) small subunit HydA n=3 Tax=Thermoprotei RepID=A1RXR6_THEPD Length = 423 Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 95/418 (22%), Positives = 173/418 (41%), Gaps = 79/418 (18%) Query: 10 AMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTESF 69 +++ ++RR FLK +AA L ++A A I +VW +C T + Sbjct: 2 SLKGISISRRDFLKMGGVAALLASLNWDELVRLAVAQAQSGSINIVWFEAQDCAGNTTAL 61 Query: 70 IRSAHPLAKDVILSL--------ISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVE 121 I++ P DV+ + L + +T+M G A + ++L +E Sbjct: 62 IQATEPDLIDVLGGSFHLVGPGNVKLAFHETVMPEWGEGALSIARAAAQGKLDPFVLVLE 121 Query: 122 GNPPLGEQG-------MFCI---SSGRPF--IEKLKRAAAGASAIIAWGTCASWGCVQAA 169 G+ P E+ +C +G+ +E ++R A A++ G CAS+G + A Sbjct: 122 GSFPQDEKAGGPPGSDSYCYIGDENGKVISCVEWMRRLLPRAVAVVTMGNCASYGGLVAN 181 Query: 170 R--------------PNPT---------------------QATPIDKVITD--------- 185 + +PT +A P + IT Sbjct: 182 KVLERVPGLPSSSWSDSPTGAVGFFDDPIRGIKGLVSTLPEAEPFRRFITGQCTLKPGEI 241 Query: 186 ----KPIIKVPGCPPIPD----VMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYR 237 +P + VPGCP + ++A++ + LP++D+ RP +G +H++C R Sbjct: 242 RPDCRPAMAVPGCPANGNGQLRALAALVLWAKGLLPLPELDKYWRPKFIFGNTVHEQCPR 301 Query: 238 RAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGC 297 + AG+F +++ R CLY +GCKGP + + W +GV P ++G C+GC Sbjct: 302 AGSYAAGDFRAYPGENSYR---CLYAVGCKGPISNCPWNKLGWVNGVGGPTRTGGVCIGC 358 Query: 298 AENGFWDRGSFYSRVVDIPQMGTHSTADTVGLTALGVVAAAVGVHAVASAVDQRRRHN 355 GF D + + + P++ + G+ A+ + A VG+ AS ++R+ Sbjct: 359 TMPGFTDAYEPFYKPLQAPRV----PSGLEGVAAIAALLAGVGLAYGASKSIEKRKEE 412 >UniRef50_D2ATL3 NADH ubiquinone oxidoreductase, 20 kDa subunit n=10 Tax=Bacteria RepID=D2ATL3_STRRD Length = 358 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 77/292 (26%), Positives = 133/292 (45%), Gaps = 39/292 (13%) Query: 47 ENKPRIPVVWIH-GLECTCCTESFIRSAHPLAKDVILSLIS-----------LDYDDTLM 94 + +P + ++WI+ GL C + + + P ++++L + +D++ M Sbjct: 15 QEEPVVHILWINAGLSCDGDSVALTAATQPSIEEIVLGALPGLPKVAVHWPLIDFESGPM 74 Query: 95 AAAGTQAEEVFEDIITQYNGKYILAVEGNPP---LGEQGMFC-----ISSGRPFI--EKL 144 A E F+ + + ++L VEG+ P + ++G +C +G+P E L Sbjct: 75 QGADVFIEWFFKADRGELD-PFVLVVEGSIPNESIKQEGYWCGFGNNPETGQPMTTSEWL 133 Query: 145 KRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVI-------TDKPIIKVPGCPPI 197 R A A+A++A GTCA++G + A NPT A + + PI+ VPGCP Sbjct: 134 DRLAPKATAVLAAGTCATYGGIHAMAGNPTGAMGVADYLGWDWRSKAGLPIVNVPGCPIQ 193 Query: 198 PDVMSAIITYMV--TFDRLP--DVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDD 253 PD +S I Y++ + P +D RP +GQ +H+ C R +++ G+F + Sbjct: 194 PDNLSETILYLLYQVAGQAPMIPLDEALRPTWLFGQTVHEGCDRAGYYEQGQFATEYGSP 253 Query: 254 AARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDR 305 CL K+GC GP W +G+ G C+ C GF D+ Sbjct: 254 K-----CLVKIGCWGPVVKCNVPKRGWMNGIGGCPNVGGICIACTMPGFPDK 300 >UniRef50_A6QAV6 Ni-Fe hydrogenase, small subunit HupS n=3 Tax=Epsilonproteobacteria RepID=A6QAV6_SULNB Length = 298 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 85/309 (27%), Positives = 133/309 (43%), Gaps = 49/309 (15%) Query: 48 NKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFED 107 NKP++ +W+ + C T SF+ + ILS L + L +A E+ Sbjct: 5 NKPKL--LWLQSITCNGNTHSFLNHPELFS---ILSHFELVHHPVLESAY------TLEN 53 Query: 108 IITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWG--- 164 +I +L VEG E+G + SG LK+ A A II+ GTCA++G Sbjct: 54 VIKGEVPCDLLIVEG--AFKEEGF--LKSGVEVSSVLKKYADKAKYIISAGTCATFGGIF 109 Query: 165 -----------CVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDR 213 C P + K+I+ +PGCP P +S ++ + + ++ Sbjct: 110 KENDPEEISGFCFDGEEKTPRYESYASKLIS------LPGCPIHPRWLSYLLLMIASGNK 163 Query: 214 LPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDA----ARKGYCLYKMGCKGP 269 +P +D + RP+ YG +H C R +F+ W DA ++G Y+ GC+GP Sbjct: 164 VP-LDTLHRPVELYGYTVHTGCTRNEYFE-------WKIDAKQFGVKEGCLFYEQGCQGP 215 Query: 270 TTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYSRV-VDIPQMGTHSTADTVG 328 T +C+ WND S + G C GC E GF G + ++ + IP Sbjct: 216 YTRGSCNKILWND-TSSKTRVGTPCFGCTEPGFPQAGLYRTKTHMGIPATMPLGIPRRAY 274 Query: 329 LTALGVVAA 337 LT GVV + Sbjct: 275 LTLTGVVKS 283 >UniRef50_A3MWH6 Nickel-iron dehydrogenase small subunit, N-terminal domain protein n=4 Tax=Thermoproteaceae RepID=A3MWH6_PYRCJ Length = 442 Score = 97.4 bits (241), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 109/433 (25%), Positives = 170/433 (39%), Gaps = 106/433 (24%) Query: 16 VTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFIRSAHP 75 +TRR F++ SLAA L K A + +VW +C T + I++ P Sbjct: 4 ITRRDFIRAGSLAAALSALNWSALVKAAGEAVRSGAVNIVWFEAQDCAGNTTAVIQATDP 63 Query: 76 LAKDVILSL--------ISLDYDDTLMAAAGT--------------------------QA 101 DV+L + L + +T+M GT A Sbjct: 64 SLLDVLLGTTPLVGPGTVRLIFHETVMPQWGTYHVKQASDVASEKILESYVEHQPPPGDA 123 Query: 102 EEVFEDIITQYNGKYILAVEGNPPL----------GEQGMFCISSGRPFIEKLKRAAAGA 151 ++ E+I G Y+L +EG+ P E G +C+ + LK A Sbjct: 124 MKILEEIAQGKYGPYVLVLEGSFPQEYGIEGSNIKQEGGYYCVVGHKTCTAWLKSLLNNA 183 Query: 152 SAIIAWGTCASWGCVQAAR--------------PNPTQAT-------------------- 177 A++A G CA++G + A + P+PT A Sbjct: 184 LAVVAVGNCAAYGGLVANKVLEPPPGFTYPTWSPSPTGAIGFFDDPIRGIKGAIHQPYFQ 243 Query: 178 ----PIDKVI---------TDKPIIKVPGCPPIPDVMS---AIITYMVTFDRLPDV---- 217 P K I T KP + VPGCP + + A++T + PDV Sbjct: 244 PEIEPFRKYIDEGGVPDFKTIKPAVAVPGCPANGNGILRTLALLTLVAAGYLKPDVLERK 303 Query: 218 ---DRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNA 274 D+ RP + +H++C R A + AG F + A G CL+++GCKGP + Sbjct: 304 AFLDKYARPRFIFELTVHEQCPRAAWYAAGNFRPT---PGAGDGKCLFEVGCKGPISNCP 360 Query: 275 CSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYSRVVDIPQMGTHSTADTVGLTALGV 334 + W GV P ++G C+GC GF D + ++ P++ +TA VG+ GV Sbjct: 361 WNKVGWVSGVGGPTRTGGVCIGCTMPGFTDAYEPFWAPLNAPRL-PDTTAIAVGV-GTGV 418 Query: 335 VAAAVGVHAVASA 347 A+G +A+A A Sbjct: 419 ALGALGAYALARA 431 >UniRef50_C1DUE6 Hydrogenase-2, small subunit n=1 Tax=Sulfurihydrogenibium azorense Az-Fu1 RepID=C1DUE6_SULAA Length = 312 Score = 97.4 bits (241), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 75/279 (26%), Positives = 122/279 (43%), Gaps = 32/279 (11%) Query: 54 VVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYN 113 +VWI GL C + SF+ S + DV LS I++ Y M + + ++V++ +++ Sbjct: 11 LVWIQGLTCNGNSHSFL-SINDTMLDVFLSNINILYHP--MLTSEMEFKDVYKLLLSGKE 67 Query: 114 GKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNP 173 L VEG + +F G E L + I+A G CA +G A Sbjct: 68 SLNFLVVEGAVNTKKDEVF--FQGFDVFEILNNLKDKSDYILAVGNCACYGNFPALYNEN 125 Query: 174 TQATPID------------KVITDKPIIKVPGCPPIPD-VMSAIITYMVTFDRLPDVDRM 220 + K + PII + GCP P+ ++ I++ +D +D + Sbjct: 126 VKGLQYRFKDKGGFLGEDFKTKSGYPIINITGCPAHPEWIVRTILSLNFGYD--IKLDNL 183 Query: 221 GRPLMFYGQRIHDKCYRRAHFD----AGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACS 276 RP FY HD C R +F+ A EF ++G Y++GC+GP T++ C+ Sbjct: 184 NRPKDFYMYLAHDGCIRNEYFEWKVEAHEF-------GTKEGCLFYELGCRGPLTHSPCN 236 Query: 277 STRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYSRVVDI 315 WN+ S +SG C+GC E F R ++ +I Sbjct: 237 KILWNEKSS-KTRSGMPCIGCTEFDFPLRSKYFETKTNI 274 >UniRef50_A4YF94 NADH ubiquinone oxidoreductase, 20 kDa subunit n=8 Tax=cellular organisms RepID=A4YF94_METS5 Length = 322 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 70/270 (25%), Positives = 128/270 (47%), Gaps = 28/270 (10%) Query: 54 VVWIHGLECTCCTESFIRSAHPLAKDVILSL----ISLDYDDTLMAAAGTQAEEVFEDII 109 ++W+ G C T S + ++ P D++ L + L + +L G +++ E II Sbjct: 4 LLWLQGGACGGNTLSVLNASDP---DILSFLYQNNVKLLWHPSLSQECGRDLKKILESII 60 Query: 110 TQYNGKYILAVEGNPPLGE--QGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQ 167 IL EG+ G +G F + +G+P + ++ A A+ I+A G CAS+G + Sbjct: 61 EGKINLDILLFEGSIVRGPAGKGTFNMFAGKPMMWWVREIAPQANYIVAVGDCASFGGIP 120 Query: 168 AARPNPTQATPID--------------KVITDKPIIKVPGCPPIPDVMSAIITYMVTFDR 213 AA PNPT++T + + + P+I + GCP P+ + +T ++ + Sbjct: 121 AADPNPTESTGLQFHRKEMSGFLGKDFRCKSGLPVINLSGCPVHPEWLITTLTLILRGEM 180 Query: 214 LPD-VDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTY 272 + +D RP +FY C R+ +F + S + ++G + +GC+G T Sbjct: 181 NQEMLDEFNRPRIFYATTTQFGCPRQPYFT---YKISTKEFGHKEGCLFFDLGCRGSYTR 237 Query: 273 NACSSTRWNDGVSFPIQSGHGCLGCAENGF 302 ++C++ WN+ S + G C+GC E F Sbjct: 238 SSCNNILWNNQSS-KTRVGTPCMGCTEFDF 266 >UniRef50_Q79IP7 Regulatory n=46 Tax=Proteobacteria RepID=Q79IP7_RALEH Length = 347 Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 78/288 (27%), Positives = 122/288 (42%), Gaps = 28/288 (9%) Query: 52 IPVVWIHGLECTCCTESFIRSAHPLAKDVILSL-ISLDYDDTLMAAAGTQAEEVFEDIIT 110 + V+WI C C+ S + + ++ S I + + +L +G + ++ ED + Sbjct: 17 LNVLWIQSGGCGGCSMSLLCADTTDFTGMLKSAGIHMLWHPSLSLESGVEQLQILEDCLQ 76 Query: 111 QYNGKYILAVEGNPPLGEQGM----FCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCV 166 + L VEG G G +G P IE + R AA A +A GTCA++G + Sbjct: 77 GRVALHALCVEGAMLRGPHGTGRFHLLAGTGVPMIEWVSRLAAVADYTLAVGTCAAYGGI 136 Query: 167 QAARPNPTQATPID--------------KVITDKPIIKVPGCPPIPD-VMSAIITYMVTF 211 A NPT A + + P+I V GCP P V A+ Sbjct: 137 TAGGGNPTDACGLQYEGDQPGGLLGLNYRSRAGLPVINVAGCPTHPGWVTDALALLSARL 196 Query: 212 DRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTT 271 D+D +GRP + Q +H C R ++ EF S + + G + MGCKG Sbjct: 197 LTASDLDTLGRPRFYADQLVHHGCTRNEYY---EFKAS-AEKPSDLGCMMENMGCKGTQA 252 Query: 272 YNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYS---RVVDIP 316 + C++ WN G + G+ C+ C E GF + G + +V IP Sbjct: 253 HADCNTRLWN-GEGSCTRGGYACISCTEPGFEEPGHPFHQTPKVAGIP 299 >UniRef50_D1VJL8 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Actinobacteria (class) RepID=D1VJL8_9ACTO Length = 416 Score = 90.9 bits (224), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 81/306 (26%), Positives = 133/306 (43%), Gaps = 49/306 (16%) Query: 38 MAPKIAWALENKPRIPVVWIH-GLECTCCTESFIRSAHPLAKDVILSLIS---------- 86 +AP+ A E++ I ++WI+ GL C + + + P +++ L + Sbjct: 45 VAPERVPAWEDQAPIHLLWINAGLSCDGDSVALTAATQPSIEEIALGALPGLPKVAVHWP 104 Query: 87 -LDYDDTLMAAAGTQAEEVFEDIITQYN----GKYILAVEGNPP---LGEQGMFC----- 133 +D+D + Q + F + + + ++L VEG+ P + G + Sbjct: 105 LIDFD-----SGPEQGADAFLEWFRKADRGELDPFVLVVEGSIPNERINGDGYWTGFGSD 159 Query: 134 ISSGRPFIEK--LKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPID-------KVIT 184 ++G+P L R A A A++A GTCA++G + A NPT A + K Sbjct: 160 QATGQPITVNAWLDRLAPKALAVLAVGTCATYGGIHAMAGNPTGAMGVPDYLGWDWKSSA 219 Query: 185 DKPIIKVPGCPPIPDVMSAIITYMV-----TFDRLPDVDRMGRPLMFYGQRIHDKCYRRA 239 PI+ VPGCP PD +S I Y++ +P D++ RP +G +HD C R Sbjct: 220 GIPIVCVPGCPIQPDNLSETIVYLLYQASGQAPMIPLDDQL-RPRWLFGTTVHDGCDRAG 278 Query: 240 HFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAE 299 ++ G F ++ + CL K+GC GP W +GV G C+ C Sbjct: 279 FYEEGRFAHAYGEPE-----CLVKLGCWGPVVKCNVPKRGWMNGVGGCPNVGGICIACTM 333 Query: 300 NGFWDR 305 GF DR Sbjct: 334 PGFPDR 339 >UniRef50_Q53161 Hydrogen uptake hydrogenase small subunit (Fragment) n=2 Tax=Rhodobacteraceae RepID=Q53161_RHOSH Length = 59 Score = 90.5 bits (223), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 39/59 (66%), Positives = 45/59 (76%) Query: 1 MNNEETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHG 59 M ETFY MRRQG+TRRSF+KYCSL A +LGLG PKIA A+E KPR PV+W+HG Sbjct: 1 MPQIETFYDVMRRQGITRRSFMKYCSLTAAALGLGPSFVPKIAHAMETKPRTPVIWVHG 59 >UniRef50_Q0RN51 Uptake hydrogenase small subunit (Hydrogenlyase) (Membrane-bound hydrogenase small subunit) n=23 Tax=Bacteria RepID=Q0RN51_FRAAA Length = 359 Score = 90.5 bits (223), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 84/347 (24%), Positives = 148/347 (42%), Gaps = 42/347 (12%) Query: 54 VVWI-HGLECTCCTESFIRSAHPLAKDVILSLI----SLDYDDTLMAAAGTQAEEVFEDI 108 ++WI G+ C T S ++ P +DVI +I ++ + +++ EE Sbjct: 22 ILWISEGMSCDGDTVSVTAASQPAIEDVITGVIPGLPTVHLHNKVLSPT-LGGEEFLAPF 80 Query: 109 ITQYNGK---YILAVEGNPP---LGEQGMFCI-----SSGRPFIEK--LKRAAAGASAII 155 G+ ++L +EG+ P + +G + +G+P + R A A A+I Sbjct: 81 RAAARGELEPFVLVIEGSIPNENINGEGYWTSFGNDPDTGQPLTINWWIDRLAPRAWAVI 140 Query: 156 AWGTCASWGCVQAARPNPTQATPIDKVIT-------DKPIIKVPGCPPIPDVMSAIITYM 208 A GTCA++G + A NPT + + + + PI+ VPGCP PD +T++ Sbjct: 141 AIGTCAAYGGIHAMAGNPTGSMGLLDYLGRDFTSAGNLPIVNVPGCPVQPDDFMETLTWL 200 Query: 209 VTFDR----LPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKM 264 + P +D RP +G+ +H+ C R +++ G+F + ++ C K+ Sbjct: 201 LYHAAGTAPPPPLDDQHRPQWIFGRTVHEGCDRAGYYEQGDFAKDYNSPK-----CQVKI 255 Query: 265 GCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYSRVVDIPQMGTHSTA 324 GC GP W GV G C+ C GF D+ + +D+P + S Sbjct: 256 GCWGPVVNCNVPKRGWMGGVGGCPNVGGICIACTMPGFPDK---FMPFMDMPPGASLS-- 310 Query: 325 DTVGLTALG-VVAAAVGVHAVASAVDQRRRHNQQPTETEHQPGNEDK 370 ++ + G V+ G+ + R RHN+ T + P K Sbjct: 311 -SLAVKPYGSVIRRLRGITNATVNREPRWRHNRDLLTTGYDPSYRPK 356 >UniRef50_B1Y6B2 NADH ubiquinone oxidoreductase 20 kDa subunit n=3 Tax=Proteobacteria RepID=B1Y6B2_LEPCP Length = 313 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 70/282 (24%), Positives = 125/282 (44%), Gaps = 25/282 (8%) Query: 54 VVWIHGLECTCCTESFIRSAHPLAKDVILSL-ISLDYDDTLMAAAGTQAEEVFEDIITQY 112 ++W+ C + + + + P + ++ S I L + +L + + V + I+ Sbjct: 4 LLWLQTGSCGGDSLAILSADSPSLEQLLDSYSIELLWHPSLSNGHARRLDRVIDQILAGE 63 Query: 113 NGKYILAVEGNPPLGEQG--MFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAAR 170 IL VEG+ G +G ++ G + ++ AA A A++A GTCA++G + AA Sbjct: 64 QALDILCVEGSIITGPRGTGLYDPWRGGAKMNLVRDLAAKAGAVVAMGTCAAYGGIHAAP 123 Query: 171 PNPTQATPID--------------KVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPD 216 PNP+ T + + + P+I V GCP P M+ + + L + Sbjct: 124 PNPSDCTGLQFDHEQPGGLLGPGWRSRSGMPVINVAGCPAHPHAMTQTLAALAAGLPL-E 182 Query: 217 VDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACS 276 +D + RP+ + +H C R + + D K + +GC+GP T C+ Sbjct: 183 LDAIHRPVSHFSTMVHQGCTRNEYHE----YNIEDSTPGGKACMFFNLGCQGPLTRAVCN 238 Query: 277 STRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYS--RVVDIP 316 + WN GVS ++G C GC F G +S ++ D+P Sbjct: 239 TDLWN-GVSSKTRAGVPCFGCTSPNFPHDGDLFSTEKIGDVP 279 >UniRef50_C0QPV6 Hydrogenase-2, small subunit n=7 Tax=Bacteria RepID=C0QPV6_PERMH Length = 306 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 83/292 (28%), Positives = 125/292 (42%), Gaps = 51/292 (17%) Query: 54 VVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYN 113 ++WI GL C+ ++SF+ +P D S I+L + + + EDI+ N Sbjct: 4 LLWIQGLTCSGNSQSFLCGENPTVSD-FFSEINLLWHPEISYS---------EDIMDILN 53 Query: 114 GKY-------ILAVEG----NPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCAS 162 G Y L +EG N G + I + I KLK + A IIA G CA Sbjct: 54 GIYRDEIKLDFLIIEGAVTSNKRFHRIGKYSI---KYIINKLK---SKADYIIAVGNCAV 107 Query: 163 WGCVQAARPNPTQATPIDKVITDK--------------PIIKVPGCPPIPD-VMSAIITY 207 G A NP Q T I + K P+I + GCP P+ + ++T Sbjct: 108 HGNYPALY-NPDQITGIQFGLNGKKGLLPQKFRTKSGYPVINITGCPVHPEWITKTVLTL 166 Query: 208 MVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCK 267 D +D RP Y HD C R +F E+ ++ ++G Y++GC+ Sbjct: 167 SYGLDL--KLDSQNRPKELYMYLSHDGCTRNEYF---EWKVEAEEFGTKEGCLFYELGCR 221 Query: 268 GPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYS--RVVDIPQ 317 GP T+ C+ WN G S ++G C+GC E F R ++ + + IPQ Sbjct: 222 GPVTHAPCNRILWN-GRSSKTRAGMPCIGCTEFDFPYRENYLETKKYMGIPQ 272 >UniRef50_C0BH99 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Flavobacteria bacterium MS024-2A RepID=C0BH99_9BACT Length = 384 Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 66/289 (22%), Positives = 123/289 (42%), Gaps = 42/289 (14%) Query: 56 WIHGLECTCCTESFIRSAHPLAKDVILSLIS-----LDYDDTLMAAAGTQAEEVFEDIIT 110 WI G C C+ + + + P ++++ I + + L AG + + F Sbjct: 24 WIAGGSCDGCSIATVGATSPSVENLLNGTIPGAAKVILHHPVLAVNAGEEFMKPFRLAAK 83 Query: 111 -QYNGKYILAVEGNPPLGEQGMFCISSGR-----------------PFIEKLKRAAAGAS 152 + +++ EG+ + ++GM + G P + R + A+ Sbjct: 84 GELGAPFVVLCEGS--IMDEGMAAETGGYWSGLGADEDENGDPQPIPSSSWVTRMSEHAA 141 Query: 153 AIIAWGTCASWGCVQAARPNPTQATPIDKVITDK-------PIIKVPGCPP----IPDVM 201 A++A GTCA+WG + AA NPT + + ++ + P++ +PGC P I + + Sbjct: 142 AVVAVGTCATWGGIPAAANNPTNSASVMDLLGEDYRSTLGLPVVNIPGCAPQGDNITETI 201 Query: 202 SAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCL 261 +++ ++ LP+ D +GRP + + +H C R ++ G F + D CL Sbjct: 202 VSVLMFLNGLTPLPEFDELGRPSWLFDETVHRGCTRAGFYEEGNFAEEHGDKE-----CL 256 Query: 262 YKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDR-GSFY 309 ++GC GP + + V + G C+GC GF D FY Sbjct: 257 VEVGCWGPVVQCNINKRGAINHVGGCMNVGAPCIGCTMPGFPDSFAPFY 305 >UniRef50_Q2W8A6 Ni,Fe-hydrogenase I small subunit n=4 Tax=Proteobacteria RepID=Q2W8A6_MAGSA Length = 384 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 85/332 (25%), Positives = 136/332 (40%), Gaps = 28/332 (8%) Query: 38 MAPKIAWALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSL-ISLDYDDTLMAA 96 M ++A + + W+ C T SF+ S P + L I + Y +L Sbjct: 61 MMKEVAGGRRPGMNLNLYWLQCGGCGGDTMSFLNSETPDILQLFSGLGIDVVYHPSLSNT 120 Query: 97 AGTQAEEVFEDIITQYNGKYILAVEG---NPPLGEQGMFCISSGRPFIEKLKRAAAGASA 153 + + E I + IL VEG P G GM+ RP + + A A Sbjct: 121 SQAEQHSQLEVISSGEMPLDILVVEGAVLRGPAG-TGMYDTKGRRPKKDIVAALARQARF 179 Query: 154 IIAWGTCASWGC-----------VQAARPNPTQATPID-KVITDKPIIKVPGCPPIPDVM 201 ++A GTCA++G +Q R P D + + P++ + GCP P V+ Sbjct: 180 VVAAGTCAAFGGFGARTEIEATGLQFHRSEPGGFLGADFRAKSGLPVLNLSGCPCHPQVL 239 Query: 202 SAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCL 261 S+++T + T LP + + RPL +YG +H C R + + + +D+ KG Sbjct: 240 SSVLTALATGAELP-LAPLNRPLPWYGMMVHQGCTRNEYHE----YRVEEDNFGEKGCLF 294 Query: 262 YKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGF-WDRGSFYSRVVDIPQMGT 320 + MGC GP C+ WN S ++G C GC F D F +R ++ + Sbjct: 295 FHMGCHGPLVTGPCNKLLWNQRSS-KTRAGVPCFGCTSPEFPQDHAFFETRNIEGIPLDL 353 Query: 321 HSTADTVGLTALGVVAAAVGVHAVASAVDQRR 352 + + V+AAA A + QRR Sbjct: 354 PNGINRAHYMVYKVMAAA----AAPERLRQRR 381 >UniRef50_D2LGK5 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LGK5_RHOVA Length = 358 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 83/343 (24%), Positives = 141/343 (41%), Gaps = 33/343 (9%) Query: 51 RIPVVWIHGLECTCCTESFIRSAHP-LAKDVILSLISLDYDDTLMAAAGTQAEEVFEDII 109 R+ ++W+ C C+ S + + P L + L I + +L A+G + I+ Sbjct: 23 RLSLLWLQSGGCGGCSMSLLNADSPDLFAALDLGRIDVLAHPSLSEASGEDYHALIARIL 82 Query: 110 TQYNGKYILAVEGNPPLGEQGM----FCISSGRPFIEKLKRAAAGASAIIAWGTCASWGC 165 + IL VEG G G +G+P ++ + AA A +IA G+C ++G Sbjct: 83 SGQQPLDILCVEGAILRGPNGTGRFHLQPGTGKPVMQLVAELAACAGHVIAIGSCTAYGG 142 Query: 166 VQAARPNPTQAT--------------PIDKVITDKPIIKVPGCPPIPD-VMSAIITYMVT 210 V AA N T+A P + + P I + GCP P ++ ++ Sbjct: 143 VSAAGDNVTEACGLAFEGAEPGGLLGPGFRSHSGLPAINIAGCPTHPGWIVETLVQLGDG 202 Query: 211 FDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPT 270 D+D GRP + +H C R ++ ++ + + G + +GC G Sbjct: 203 TFSASDLDTYGRPRFYADHLVHHGCTRNEFYE----YKASAKEPGQLGCLMEHLGCIGTQ 258 Query: 271 TYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYSRVVDIPQMGTHSTADTVGLT 330 + C+ WN G I+ G+ C+GC E F +R + Y ++ P+ G VGL Sbjct: 259 VHGDCNMRAWN-GEGSCIRGGYPCIGCTEPTFGERDAPY---LETPKRG----GIPVGLP 310 Query: 331 ALGVVAAAVGVHAVA-SAVDQRRRHNQQPTETEHQPGNEDKQA 372 A V + ++A +A +R R N PG +A Sbjct: 311 TDMPKAWFVALASLAKAATPERLRKNALAERIAVPPGQASGKA 353 >UniRef50_B9L8N0 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Nautilia profundicola AmH RepID=B9L8N0_NAUPA Length = 288 Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 76/312 (24%), Positives = 133/312 (42%), Gaps = 54/312 (17%) Query: 51 RIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIIT 110 ++ V+WI + C CT SF+ + + ++ +Y + + E+ + + Sbjct: 4 KLNVIWIDAVTCYGCTHSFLNYKEISS---LFEKVNFEYHPLFL----SNDLEIKQCDLL 56 Query: 111 QYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCV--QA 168 G A++ N P G E + + A ++A GTCA +G + + Sbjct: 57 IVEG----ALKNNYP---------RLGYSLNELISKLFFKAKKVLALGTCAVYGGMFGEG 103 Query: 169 ARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYG 228 N Q K DK II +PGCPP PD ++ ++ M++ ++ +D + RP + Sbjct: 104 LMYNKEQKGHYYKC-RDK-IINLPGCPPHPDWIAFVLD-MISENKKIALDDLNRPKDIFA 160 Query: 229 QRIHDKCYRRAHFDAGEFVQSWDDDA----ARKGYCLYKMGCKGPTTYNACSSTRWNDGV 284 H C R +F+ W DA ++G Y GC+GP T+++C+ WN+ Sbjct: 161 YTSHMGCTRNEYFE-------WKIDAENFGTKEGCLFYFQGCQGPFTHSSCNKVLWNEVS 213 Query: 285 SFPIQSGHGCLGCAENGFWDRGSFYSRVVDIPQMGTHSTADTVGLTA---LGVVA-AAVG 340 S P ++G C GC E F P+ T +G+ A LGV A + Sbjct: 214 SKP-RAGTPCFGCTEPNF-------------PKNDLFKTDTFMGIPANIPLGVSKRAYLT 259 Query: 341 VHAVASAVDQRR 352 + +A +++ R Sbjct: 260 LSGIAKSLNNER 271 >UniRef50_A2BMI5 NiFe hydrogenase n=1 Tax=Hyperthermus butylicus DSM 5456 RepID=A2BMI5_HYPBU Length = 506 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 50/173 (28%), Positives = 85/173 (49%), Gaps = 8/173 (4%) Query: 186 KPIIKVPGCPPIPDVMSAIITYMVTFDR----LPDVDRMGRPLMFYGQRIHDKCYRRAHF 241 KP + VPGCP + +T ++ + + LP++D+ RP + +G +H++C R + Sbjct: 335 KPAVAVPGCPSNGNAQLKTLTNLILWVKGELPLPELDQYWRPKIIFGGSVHEQCPRNEKY 394 Query: 242 DAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENG 301 AG ++S + G CL+ +GCKGP + + W +GV P ++G C+GC G Sbjct: 395 RAG-ILRS--EPGEPSGACLFSVGCKGPISNCPYNKIGWVNGVGGPTRTGGVCIGCTMPG 451 Query: 302 FWDRGSFYSRVVDIPQMGTHSTADTVGLTALGV-VAAAVGVHAVASAVDQRRR 353 F D Y + + P S A + A V V AA G+ +A ++ + Sbjct: 452 FMDAYEPYYKPLPAPVKPEASAATELAAGAAVVGVLAAYGIRKLAGGEKEKEK 504 >UniRef50_Q30QL6 Ni-Fe hydrogenase, small subunit n=2 Tax=Campylobacterales RepID=Q30QL6_SULDN Length = 293 Score = 77.4 bits (189), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 75/302 (24%), Positives = 122/302 (40%), Gaps = 32/302 (10%) Query: 46 LENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVF 105 +E K RI +W+ + C T SF+ H + L Y + + Q Sbjct: 1 MEKKMRI--LWLSAITCNGNTHSFLNYPH---MEQFLDDFEFIYHPVIDSKYSLQ----- 50 Query: 106 EDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGC 165 +I++ +L +EG + E+ G P E +K + I+ GTCA++G Sbjct: 51 -EIVSNEIECEVLIIEG--AISEEFQ---RGGVPIFEIIKNYSKRVQKILTVGTCATFGG 104 Query: 166 V-QAARPNPTQATPIDKV--------ITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPD 216 + + + T D+ DK I + GCP P+V+ + Y + L Sbjct: 105 IFRESDYKDTAGMHFDQDRALHNFSDFLDKTI-SISGCPIHPEVLVNTL-YAIKKSVLLR 162 Query: 217 VDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACS 276 VD RP FY +H+ C R +F E+ +G Y GC+ P T+ +C+ Sbjct: 163 VDNFLRPKEFYAYTVHNGCTRNEYF---EYKVDNHKFGELEGCMFYDHGCQAPFTHGSCN 219 Query: 277 STRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYSRV-VDIPQMGTHSTADTVGLTALGVV 335 WN+ V+ ++G C GC E F F ++ + IP+ V LT G+ Sbjct: 220 KILWNE-VNSKTRAGVPCFGCTEPSFPRDNLFNTKKNMAIPEHLPLGVNKRVYLTLAGIT 278 Query: 336 AA 337 A Sbjct: 279 KA 280 >UniRef50_UPI000190EB16 hydrogenase-1 small chain n=1 Tax=Salmonella enterica subsp. enterica serovar Typhi str. E01-6750 RepID=UPI000190EB16 Length = 61 Score = 70.5 bits (171), Expect = 9e-11, Method: Composition-based stats. Identities = 31/33 (93%), Positives = 33/33 (100%) Query: 1 MNNEETFYQAMRRQGVTRRSFLKYCSLAATSLG 33 MNNEETFYQAMRR+GVTRRSFLK+CSLAATSLG Sbjct: 29 MNNEETFYQAMRRKGVTRRSFLKFCSLAATSLG 61 >UniRef50_A4YFB4 Nickel-iron dehydrogenase small subunit, N-terminal domain protein n=1 Tax=Metallosphaera sedula DSM 5348 RepID=A4YFB4_METS5 Length = 432 Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 98/393 (24%), Positives = 139/393 (35%), Gaps = 116/393 (29%) Query: 15 GVTRRSFLKYCSLAA--TSLGL-GAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFIR 71 G+TRR FLK + A TSL L G ++ A E I +VW C T +FI Sbjct: 2 GLTRRDFLKVSGVTALGTSLALSGLSYEELLSKAQEADQPINIVWTGNGWCGGNTIAFID 61 Query: 72 SAHPLAKDVI-------------------LSLISLDYDDTLMAAAGTQAEEVFEDIITQY 112 + +P +DV+ L +I+L Y LM Q + + Sbjct: 62 AMNPSVEDVVTGVYFNGKPITLRQPSIPDLGMINLVYHPILMP----QDNMAYATMEMAL 117 Query: 113 NGK---YILAVEGN--PPLG-----EQGMFCISSGRP----------FIEKLKRAAAGAS 152 NG+ ++L VEG G G F S+GR F+ L + AA Sbjct: 118 NGELDPFVLVVEGTMFDEFGVYYKKPSGSFWCSAGRKPDGSVLLCDEFVFNLMKKAA--- 174 Query: 153 AIIAWGTCASWGCVQAARPNPTQATP---------------------------------I 179 A++A G CA++G + A Q +P I Sbjct: 175 AVVATGACATYGGIPATTNGLGQRSPTYAMGMLDDPYRGIYGFPYYVHQVYTQDLAPDII 234 Query: 180 DKVI---TDKP-------------------IIKVPGCPPIPD-VMSAIITYMVTFDRL-- 214 D+ I T+ P II + PP D +M +++ ++ L Sbjct: 235 DQDIYSVTNSPVNTSWPGPSYHWLSTAGLPIISIAADPPAGDWIMRTLVSAVLYLRGLGP 294 Query: 215 ---PDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTT 271 D+D RP FYG H C R F G F + D C Y +GCKG T Sbjct: 295 NPADDLDVFNRPKFFYGNETHQNCPRAGFFAQGIFAYEFGDPQ-----CTYSLGCKG-TE 348 Query: 272 YNACSSTRWNDGVSFPIQSGHGCLGCAENGFWD 304 N+ + G G C+ C GF D Sbjct: 349 ANSPAPLLGWVGGVGGCTRGGVCIACTAPGFPD 381 >UniRef50_B6YTV9 Coenzyme F420 hydrogenase gamma subunit n=1 Tax=Thermococcus onnurineus NA1 RepID=B6YTV9_THEON Length = 225 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 10/87 (11%) Query: 133 CISSGRPFIEKLKRAAAGASAIIAWGTCASWGCV-------QAARPNPTQATPIDKVITD 185 C++ R +E+LK A ++A+G+CA++ + Q RP+ PI+ VI Sbjct: 59 CMNEPR-ILEELKEIREKAHTVVAFGSCATFSGILRFCRGGQEPRPDHRNFQPINSVI-- 115 Query: 186 KPIIKVPGCPPIPDVMSAIITYMVTFD 212 K +PGCPP P ++ + + + D Sbjct: 116 KVDYSIPGCPPTPQMLQSFFKFYINGD 142 >UniRef50_C5A2R7 Coenzyme F420 hydrogenase subunit gamma (FrhG) n=1 Tax=Thermococcus gammatolerans EJ3 RepID=C5A2R7_THEGJ Length = 229 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 12/85 (14%) Query: 133 CISSGRPFIEKLKRAAAGASAIIAWGTCASWGCV-------QAARPNPTQATPIDKVITD 185 C++ R +E+LK A ++A+G+CAS G + Q RP+ PI+ VI Sbjct: 62 CMNEPR-ILEELKEIREKARVVVAFGSCASLGGILRFARGGQEPRPDHRNFQPINSVI-- 118 Query: 186 KPI-IKVPGCPPIPDVMSAIITYMV 209 P+ +PGCPP P ++ + + + Sbjct: 119 -PVDYSIPGCPPTPQMLQSFFKFFM 142 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_D0ZEI9 Hydrogenase-1 small subunit n=1 Tax=Edwardsiella... 521 e-146 UniRef50_P12635 Uptake hydrogenase small subunit n=8 Tax=Bacteri... 479 e-134 UniRef50_B0TDW1 Uptake [ni/fe] hydrogenase small subunit n=11 Ta... 475 e-133 UniRef50_O33405 Uptake hydrogenase small subunit n=221 Tax=Bacte... 475 e-132 UniRef50_C1DUF2 Quinone-reactive Ni/Fe-hydrogenase small chain (... 470 e-131 UniRef50_D1BNB1 Hydrogenase (NiFe) small subunit HydA n=5 Tax=Ve... 467 e-130 UniRef50_C3XGH6 Ni/Fe-hydrogenase small subunit n=8 Tax=Proteoba... 455 e-126 UniRef50_Q3ABV6 [Ni/Fe] hydrogenase, small subunit n=3 Tax=Clost... 444 e-123 UniRef50_A7BI79 Ni,Fe-hydrogenase small subunit n=2 Tax=Aquifica... 444 e-123 UniRef50_A8LH34 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Fr... 441 e-122 UniRef50_C6NZV2 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Pr... 435 e-120 UniRef50_P31884 Quinone-reactive Ni/Fe-hydrogenase small chain n... 435 e-120 UniRef50_A6DCC1 NI/FE-HYDROGENASE SMALL SUBUNIT n=1 Tax=Caminiba... 429 e-119 UniRef50_A7NNQ8 Hydrogenase (NiFe) small subunit HydA n=12 Tax=B... 428 e-118 UniRef50_C2KSS0 Hydrogenase (Acceptor) n=3 Tax=Bacteria RepID=C2... 422 e-117 UniRef50_B2UPQ9 Hydrogenase (NiFe) small subunit HydA n=8 Tax=Ba... 418 e-115 UniRef50_A5GFC8 Hydrogenase (NiFe) small subunit HydA n=6 Tax=Pr... 418 e-115 UniRef50_Q06173 Periplasmic [NiFe] hydrogenase small subunit 1 n... 413 e-114 UniRef50_B4U5S1 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Hy... 403 e-111 UniRef50_C0QEJ1 HynB n=4 Tax=Deltaproteobacteria RepID=C0QEJ1_DESAH 403 e-111 UniRef50_Q31DZ5 Ni,Fe-hydrogenase small subunit n=4 Tax=Proteoba... 393 e-108 UniRef50_B8FWY3 Hydrogenase (NiFe) small subunit HydA n=2 Tax=De... 393 e-108 UniRef50_P13061 Periplasmic [NiFe] hydrogenase small subunit n=6... 392 e-107 UniRef50_P69743 Hydrogenase-2 small chain n=130 Tax=Proteobacter... 389 e-107 UniRef50_D1U6F3 Hydrogenase (NiFe) small subunit HydA n=1 Tax=De... 388 e-106 UniRef50_Q24VQ2 Ni,Fe-hydrogenase small subunit n=2 Tax=Desulfit... 383 e-105 UniRef50_Q24X54 Hup-type Ni,Fe-hydrogenase small subunit n=3 Tax... 383 e-105 UniRef50_P61429 Periplasmic [NiFe] hydrogenase small subunit 2 n... 382 e-104 UniRef50_UPI000197A0EB hypothetical protein HcinC1_01015 n=1 Tax... 378 e-103 UniRef50_D2BG44 Ni/Fe hydrogenase, small subunit n=5 Tax=Dehaloc... 376 e-103 UniRef50_Q7VJP5 Putative uncharacterized protein n=3 Tax=Helicob... 376 e-103 UniRef50_B9KFD7 Quinone-reactive Ni/Fe-hydrogenase, small subuni... 375 e-102 UniRef50_Q5HT18 Hydrogenase, (NiFe)/(NiFeSe) small subunit famil... 371 e-101 UniRef50_P13063 Periplasmic [NiFeSe] hydrogenase small subunit n... 370 e-101 UniRef50_C7MNR7 Hydrogenase (NiFe) small subunit HydA n=4 Tax=Co... 369 e-101 UniRef50_C3XE47 Quinone-reactive Ni/Fe hydrogenase n=1 Tax=Helic... 365 1e-99 UniRef50_A5D1L0 Ni,Fe-hydrogenase I small subunit n=1 Tax=Peloto... 360 4e-98 UniRef50_D2RD73 Hydrogenase (NiFe) small subunit HydA n=3 Tax=Ar... 358 2e-97 UniRef50_Q6ARY6 Related to periplasmic [NiFeSe] hydrogenase, sma... 358 3e-97 UniRef50_A1HLY8 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Th... 353 4e-96 UniRef50_C8S958 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Fe... 342 1e-92 UniRef50_B1I618 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Cl... 330 4e-89 UniRef50_A5I2W4 Hydrogenase small subunit n=13 Tax=Firmicutes Re... 328 1e-88 UniRef50_Q1NM22 Ni-Fe hydrogenase, small subunit n=3 Tax=Deltapr... 325 2e-87 UniRef50_B8HZS9 Hydrogenase (NiFe) small subunit HydA n=3 Tax=Cl... 324 3e-87 UniRef50_B8D1R7 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Ha... 324 4e-87 UniRef50_Q1NRB7 Ni-Fe hydrogenase, small subunit:Twin-arginine t... 313 7e-84 UniRef50_B9L9V0 Hydrogenase n=1 Tax=Nautilia profundicola AmH Re... 312 1e-83 UniRef50_Q46BG0 Methanophenazine-reducing hydrogenase, small sub... 309 9e-83 UniRef50_C8R2V0 Hydrogenase (NiFe) small subunit HydA n=1 Tax=De... 309 1e-82 UniRef50_B2TM84 [Ni/Fe] hydrogenase, small subunit n=2 Tax=Clost... 306 8e-82 UniRef50_A4YF94 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 304 3e-81 UniRef50_Q0RN51 Uptake hydrogenase small subunit (Hydrogenlyase)... 304 4e-81 UniRef50_C1SPM4 Hydrogenase (NiFe) small subunit HydA n=1 Tax=De... 303 9e-81 UniRef50_Q0W5V7 F420-nonreducing hydrogenase (Membrane-bound), s... 301 4e-80 UniRef50_A1RXR6 Hydrogenase (NiFe) small subunit HydA n=3 Tax=Th... 300 6e-80 UniRef50_D2LGK5 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 296 8e-79 UniRef50_D2ATL3 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 287 4e-76 UniRef50_D2QHS8 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 286 7e-76 UniRef50_A3MWH6 Nickel-iron dehydrogenase small subunit, N-termi... 286 1e-75 UniRef50_D1VJL8 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Ac... 284 3e-75 UniRef50_C1DUE6 Hydrogenase-2, small subunit n=1 Tax=Sulfurihydr... 284 3e-75 UniRef50_Q2W8A6 Ni,Fe-hydrogenase I small subunit n=4 Tax=Proteo... 283 8e-75 UniRef50_C0QPV6 Hydrogenase-2, small subunit n=7 Tax=Bacteria Re... 279 1e-73 UniRef50_Q79IP7 Regulatory n=46 Tax=Proteobacteria RepID=Q79IP7_... 277 5e-73 UniRef50_C0BH99 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Fl... 275 2e-72 UniRef50_A6QAV6 Ni-Fe hydrogenase, small subunit HupS n=3 Tax=Ep... 267 6e-70 UniRef50_B1Y6B2 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 266 9e-70 UniRef50_Q30QL6 Ni-Fe hydrogenase, small subunit n=2 Tax=Campylo... 258 2e-67 UniRef50_B9L8N0 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 246 7e-64 UniRef50_A4YFB4 Nickel-iron dehydrogenase small subunit, N-termi... 235 2e-60 UniRef50_A2BMI5 NiFe hydrogenase n=1 Tax=Hyperthermus butylicus ... 170 1e-40 UniRef50_D1TP47 Ni Fe-hydrogenase I small subunit-like protein n... 130 8e-29 UniRef50_Q53161 Hydrogen uptake hydrogenase small subunit (Fragm... 86 2e-15 UniRef50_UPI000190EB16 hydrogenase-1 small chain n=1 Tax=Salmone... 53 2e-05 Sequences not found previously or not previously below threshold: UniRef50_D2BHA4 Nickel-dependent hydrogenase, group 3, small sub... 91 8e-17 UniRef50_Q58591 F420-non-reducing hydrogenase vhu subunit G n=13... 88 3e-16 UniRef50_Q8TYW2 Coenzyme F420-reducing hydrogenase, gamma subuni... 88 3e-16 UniRef50_C8S807 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 83 2e-14 UniRef50_B4SFA2 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 82 2e-14 UniRef50_A0LP54 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 81 8e-14 UniRef50_Q50782 F420-non-reducing hydrogenase subunit G n=15 Tax... 80 1e-13 UniRef50_C8X546 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 78 4e-13 UniRef50_A6UVU9 Coenzyme F420 hydrogenase n=2 Tax=Euryarchaeota ... 76 2e-12 UniRef50_B1L5Y5 Coenzyme F420-reducing hydrogenase, gamma subuni... 73 2e-11 UniRef50_B6YSK0 Sulfhydrogenase II, delta chain n=6 Tax=Thermoco... 73 2e-11 UniRef50_P80491 Coenzyme F420 hydrogenase subunit gamma n=27 Tax... 70 2e-10 UniRef50_B1I576 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 68 4e-10 UniRef50_C7NPL1 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 68 5e-10 UniRef50_Q00393 Coenzyme F420 hydrogenase subunit gamma n=3 Tax=... 68 5e-10 UniRef50_D2REQ3 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 67 8e-10 UniRef50_B1ZXG1 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 67 1e-09 UniRef50_UPI0001C420D3 coenzyme F420 hydrogenase gamma subunit F... 67 1e-09 UniRef50_Q0W6U0 Coenzyme F420-non-reducing hydrogenase (Methyl v... 66 3e-09 UniRef50_C9R9W3 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 65 3e-09 UniRef50_Q2LYD8 Nickel-dependent hydrogenase, small chain n=2 Ta... 65 5e-09 UniRef50_C6YT65 Predicted protein n=2 Tax=Francisella philomirag... 65 5e-09 UniRef50_Q2IH66 Methyl-viologen-reducing hydrogenase, delta subu... 65 5e-09 UniRef50_Q0W6J6 Coenzyme F420-non-reducing hydrogenase (Methyl v... 64 9e-09 UniRef50_A5UM99 Coenzyme F420-reducing hydrogenase, gamma subuni... 64 1e-08 UniRef50_A0L609 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 63 1e-08 UniRef50_B5YB68 NAD-reducing hydrogenase HoxS delta subunit n=2 ... 63 2e-08 UniRef50_B6YTV9 Coenzyme F420 hydrogenase gamma subunit n=1 Tax=... 62 3e-08 UniRef50_Q39QE2 F420-non-reducing hydrogenase subunit G n=5 Tax=... 62 3e-08 UniRef50_C6A155 NiFe hydrogenase I, subunit delta n=1 Tax=Thermo... 62 3e-08 UniRef50_C5S9B0 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 62 4e-08 UniRef50_Q1NJF2 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 62 4e-08 UniRef50_A0LLU1 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 62 4e-08 UniRef50_C1DUT4 Putative [NiFe] hydrogenase, delta subunit n=1 T... 62 5e-08 UniRef50_A0LKF2 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 62 5e-08 UniRef50_Q2KJQ3 HoxY n=4 Tax=Proteobacteria RepID=Q2KJQ3_CHRVI 61 7e-08 UniRef50_A8UU12 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 61 8e-08 UniRef50_B6YT72 Hydrogenase 4, component I or formate hydrogen l... 60 2e-07 UniRef50_O28898 Methylviologen-reducing hydrogenase, subunit gam... 59 2e-07 UniRef50_P22319 NAD-reducing hydrogenase hoxS subunit delta n=6 ... 59 3e-07 UniRef50_Q2J4E9 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 59 3e-07 UniRef50_B1L3Q1 Coenzyme F420-reducing hydrogenase, gamma subuni... 59 3e-07 UniRef50_C5A2R7 Coenzyme F420 hydrogenase subunit gamma (FrhG) n... 58 5e-07 UniRef50_Q59113 Hydrogenase small beta subunit n=2 Tax=Bacteria ... 58 6e-07 UniRef50_C8WGI4 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 58 6e-07 UniRef50_B3TC56 Putative NADH ubiquinone oxidoreductase, 20 Kd s... 57 9e-07 UniRef50_C0QP84 Putative [NiFe] hydrogenase, delta subunit n=1 T... 57 1e-06 UniRef50_A1SU83 Hydrogen dehydrogenase n=23 Tax=Proteobacteria R... 57 1e-06 UniRef50_B6YTX0 Hydrogenase 4, component I or formate hydrogen l... 57 1e-06 UniRef50_Q24ST9 Formate hydrogenlyase subunit 7 n=2 Tax=Desulfit... 56 2e-06 UniRef50_A3DKH2 NADH-quinone oxidoreductase, B subunit n=5 Tax=c... 56 2e-06 UniRef50_B5YFX1 F420-non-reducing hydrogenase subunit G n=1 Tax=... 55 3e-06 UniRef50_Q21RP8 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 55 4e-06 UniRef50_B8G3U7 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 55 5e-06 UniRef50_B5EBV9 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 55 6e-06 UniRef50_B6YU80 Cytosolic NiFe-hydrogenase, delta subunit n=9 Ta... 55 6e-06 UniRef50_Q0W6T1 [NiFe]-hydrogenase, small subunit (EchC-like) n=... 54 1e-05 UniRef50_B5EQ53 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 53 1e-05 UniRef50_A9KS72 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 53 2e-05 UniRef50_C7JEU9 NADH-ubiquinone oxidoreductase 20 kDa subunit n=... 53 2e-05 UniRef50_C5U7Y6 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 52 3e-05 UniRef50_A7GWN3 HsdS n=9 Tax=Proteobacteria RepID=A7GWN3_CAMC5 51 5e-05 UniRef50_A6LXQ4 NADH-quinone oxidoreductase subunit B n=4 Tax=Ba... 50 1e-04 UniRef50_Q3M430 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 50 1e-04 UniRef50_Q58758 Uncharacterized protein MJ1363 n=17 Tax=Euryarch... 50 1e-04 UniRef50_Q21TB3 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 50 2e-04 UniRef50_B5YKI3 NADH-quinone oxidoreductase subunit B 1 n=1 Tax=... 50 2e-04 UniRef50_C0GED7 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 48 4e-04 UniRef50_B8HLE8 NAD(P)H-quinone oxidoreductase subunit K 2 n=94 ... 48 5e-04 UniRef50_A6UVJ5 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 48 6e-04 UniRef50_B1L7S0 F420H2 dehydrogenase subunit n=3 Tax=Archaea Rep... 48 7e-04 UniRef50_A9A345 NADH-quinone oxidoreductase, B subunit n=1 Tax=N... 48 7e-04 UniRef50_C5A2Q7 Formate hydrogenlyase II subunit H (Mhy2H) n=3 T... 48 7e-04 UniRef50_D1Z1F3 Coenzyme F420 hydrogenase subunit gamma n=1 Tax=... 47 8e-04 UniRef50_B2A054 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 47 0.001 UniRef50_A9GUX6 NADH-quinone oxidoreductase subunit B 1 n=10 Tax... 47 0.001 UniRef50_C7NUN9 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 46 0.001 UniRef50_C8QXK1 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 46 0.001 UniRef50_P80510 Cytochrome c3 hydrogenase small chain (Fragment)... 46 0.001 UniRef50_Q1IPE7 NADH-quinone oxidoreductase subunit B 1 n=10 Tax... 46 0.001 UniRef50_B6IT61 Hydrogenase-4 component I n=4 Tax=Bacteria RepID... 46 0.002 UniRef50_B6YU96 Membrane bound hydrogenase, NiFe-hydrogenase sma... 46 0.002 UniRef50_C7PSH0 NADH-quinone oxidoreductase, B subunit n=4 Tax=S... 46 0.002 UniRef50_C5CEV5 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 46 0.002 UniRef50_B2V8R1 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 46 0.003 UniRef50_A0RY66 NADH-ubiquinone oxidoreductase, subunit B n=3 Ta... 46 0.003 UniRef50_C1A8Z3 NADH-quinone oxidoreductase chain B n=1 Tax=Gemm... 46 0.003 UniRef50_B6YR59 NADH-quinone oxidoreductase subunit B n=5 Tax=Ba... 46 0.003 UniRef50_C9RKY2 NADH-quinone oxidoreductase, B subunit n=2 Tax=c... 45 0.003 UniRef50_Q0W2X8 Coenzyme F420-reducing hydrogenase, gamma subuni... 45 0.003 UniRef50_C7IWD0 Os01g0791600 protein n=3 Tax=Oryza sativa Japoni... 45 0.003 UniRef50_C8W241 Hydrogenase, small subunit-like protein n=1 Tax=... 45 0.004 UniRef50_Q1D8S3 NADH-quinone oxidoreductase subunit B n=2 Tax=Cy... 45 0.004 UniRef50_A3THJ2 NADH dehydrogenase beta subunit n=2 Tax=Bacteria... 45 0.004 UniRef50_C0QR84 NADH-quinone oxidoreductase chain b (Nadh dehydr... 45 0.004 UniRef50_UPI0001698F29 hypothetical protein Epers_23938 n=1 Tax=... 45 0.004 UniRef50_C7DI98 NADH-quinone oxidoreductase, B subunit n=1 Tax=C... 45 0.004 UniRef50_B0TH78 NADH-quinone oxidoreductase subunit B n=5 Tax=Ba... 45 0.005 UniRef50_C7MLM8 Ni,Fe-hydrogenase III small subunit n=20 Tax=Bac... 45 0.005 UniRef50_Q57936 Uncharacterized protein MJ0516 n=21 Tax=Euryarch... 45 0.005 UniRef50_A5UXK1 NADH-quinone oxidoreductase subunit B 1 n=13 Tax... 45 0.005 UniRef50_Q8TXX1 Coenzyme F420-reducing hydrogenase, gamma subuni... 45 0.005 UniRef50_B0R3U2 NADH dehydrogenase-like complex subunit B n=11 T... 44 0.008 UniRef50_A5FW47 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 44 0.008 UniRef50_Q978D5 Formate hydrogenlyase subunit 2 n=2 Tax=Thermopl... 44 0.009 UniRef50_B0SFT5 NADH-quinone oxidoreductase subunit B n=13 Tax=c... 44 0.009 UniRef50_B6YWP9 NADH dehydrogenase (Ubiquinone), 20 kDa subunit ... 43 0.012 UniRef50_Q1IZX2 NADH-quinone oxidoreductase subunit B n=16 Tax=c... 43 0.012 UniRef50_A4J659 NADH-quinone oxidoreductase subunit B n=34 Tax=F... 43 0.012 UniRef50_P13064 Periplasmic [NiFeSe] hydrogenase small subunit (... 43 0.013 UniRef50_A8A9X3 NADH-quinone oxidoreductase, B subunit n=1 Tax=I... 43 0.019 UniRef50_C6PUG1 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 43 0.019 UniRef50_C6X0Z2 NADH-ubiquinone oxidoreductase chain B n=2 Tax=F... 43 0.019 UniRef50_A1RZ48 NADH-quinone oxidoreductase, B subunit n=3 Tax=T... 43 0.020 UniRef50_Q8DKZ4 NAD(P)H-quinone oxidoreductase subunit K n=21 Ta... 43 0.020 UniRef50_A2BJ94 NAD(P)H-quinone oxidoreductase chain K n=10 Tax=... 43 0.020 UniRef50_UPI00016C3AA7 NADH-quinone oxidoreductase, B subunit n=... 43 0.022 UniRef50_Q3V6B5 Hydrogen-uptake [NiFe] hydrogenase small subunit... 43 0.026 UniRef50_B4U8H3 NADH-quinone oxidoreductase subunit B n=4 Tax=Ba... 42 0.030 UniRef50_D1B297 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 42 0.030 UniRef50_P13062 Periplasmic [NiFe] hydrogenase small subunit (Fr... 42 0.032 UniRef50_UPI0001854780 quinone-reactive Ni/Fe hydrogenase HydA n... 42 0.033 UniRef50_A6L170 NADH-quinone oxidoreductase subunit B n=35 Tax=B... 42 0.036 UniRef50_C7IG01 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 42 0.042 UniRef50_Q5FU78 Putative uncharacterized protein n=1 Tax=Glucono... 42 0.044 UniRef50_B1W4V9 NADH-quinone oxidoreductase subunit B 2 n=27 Tax... 42 0.044 UniRef50_A5FW77 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 42 0.044 UniRef50_A1ASR2 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 41 0.053 UniRef50_B8J1E3 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 41 0.056 UniRef50_A3ETD3 Putative hydrogenase-3 (HycG) n=3 Tax=Leptospiri... 41 0.065 UniRef50_Q0W2C0 Hydrogenase, small subunit-like protein (HycG-li... 41 0.086 >UniRef50_D0ZEI9 Hydrogenase-1 small subunit n=1 Tax=Edwardsiella tarda EIB202 RepID=D0ZEI9_EDWTE Length = 471 Score = 521 bits (1343), Expect = e-146, Method: Composition-based stats. Identities = 354/373 (94%), Positives = 364/373 (97%), Gaps = 1/373 (0%) Query: 1 MNNEETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGL 60 MNNE+TFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGL Sbjct: 99 MNNEDTFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGL 158 Query: 61 ECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAV 120 ECTCCTESFIRS+HPLAKDVILSLISLDYDDTLMAAAGTQAE VF+DIIT+Y+GKYILAV Sbjct: 159 ECTCCTESFIRSSHPLAKDVILSLISLDYDDTLMAAAGTQAEAVFDDIITRYHGKYILAV 218 Query: 121 EGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPID 180 EGNPPLGEQGMFCISSGRPFIEKLK+AAAGASAIIAWGTCASWGCVQAARPNPTQATPID Sbjct: 219 EGNPPLGEQGMFCISSGRPFIEKLKKAAAGASAIIAWGTCASWGCVQAARPNPTQATPID 278 Query: 181 KVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAH 240 KVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAH Sbjct: 279 KVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAH 338 Query: 241 FDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAEN 300 FDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGC+EN Sbjct: 339 FDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCSEN 398 Query: 301 GFWDRGSFYSRVVDIPQMGTHSTADTVGLTALGVVAAAVGVHAVASAVDQRRRHN-QQPT 359 GFWDRGSFYSRVVDIPQMGTHSTADTVGLTALGVVAA VGVHAVASAV+QR+RHN Q Sbjct: 399 GFWDRGSFYSRVVDIPQMGTHSTADTVGLTALGVVAAGVGVHAVASAVNQRKRHNQQLAE 458 Query: 360 ETEHQPGNEDKQA 372 + QPGNEDKQA Sbjct: 459 AEQQQPGNEDKQA 471 >UniRef50_P12635 Uptake hydrogenase small subunit n=8 Tax=Bacteria RepID=MBHS_BRAJA Length = 363 Score = 479 bits (1234), Expect = e-134, Method: Composition-based stats. Identities = 235/328 (71%), Positives = 276/328 (84%) Query: 2 NNEETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLE 61 ETFY +RRQG+TRRSF K+CSL ATSLGLG A +IA ALE KPR+PV+W+HGLE Sbjct: 3 AATETFYSVIRRQGITRRSFHKFCSLTATSLGLGPLAASRIANALETKPRVPVIWMHGLE 62 Query: 62 CTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVE 121 CTCC+ESFIRSAHPL KD +LS+ISLDYDDT+MAAAG QAE + E+ ++ G+YILAVE Sbjct: 63 CTCCSESFIRSAHPLVKDAVLSMISLDYDDTIMAAAGHQAEAILEETRAKHKGQYILAVE 122 Query: 122 GNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDK 181 GNPPL E GMFCI G+PF+EKLK A A AIIAWG CASWGCVQAA+PNPTQATPIDK Sbjct: 123 GNPPLNEGGMFCIDGGKPFVEKLKMMAEDAMAIIAWGACASWGCVQAAKPNPTQATPIDK 182 Query: 182 VITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHF 241 VIT+KPIIKVPGCPPI +VM+ ++T++ TF +LP++DR GRP MFY QRIHDKCYRR HF Sbjct: 183 VITNKPIIKVPGCPPIAEVMTGVVTFITTFGKLPELDRQGRPKMFYSQRIHDKCYRRPHF 242 Query: 242 DAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENG 301 DAG+FV+ WDD+AARKGYCLYKMGCKGPTTYNACS+ RWN GVSFPIQSGHGC+GC+E+G Sbjct: 243 DAGQFVEEWDDEAARKGYCLYKMGCKGPTTYNACSTVRWNGGVSFPIQSGHGCIGCSEDG 302 Query: 302 FWDRGSFYSRVVDIPQMGTHSTADTVGL 329 FWD+GSFY R+ +I Q G AD +G+ Sbjct: 303 FWDKGSFYDRLTNIKQFGIEKNADQIGM 330 >UniRef50_B0TDW1 Uptake [ni/fe] hydrogenase small subunit n=11 Tax=Bacteria RepID=B0TDW1_HELMI Length = 395 Score = 475 bits (1223), Expect = e-133, Method: Composition-based stats. Identities = 191/363 (52%), Positives = 256/363 (70%), Gaps = 3/363 (0%) Query: 1 MNNEETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGL 60 M ++++FYQ +R +GV+RR F+K+C++ A SLGL G A IA ALE K R+PV+W + Sbjct: 25 MASQDSFYQYLRNRGVSRRDFIKFCTVMAASLGLEPGAAGAIAEALETKRRMPVIWRNFQ 84 Query: 61 ECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAV 120 ECTCCTESFIR+ HP A D+I+++ISLDY +TLM AAG QAEE I G YILAV Sbjct: 85 ECTCCTESFIRTQHPKASDIIMTMISLDYHETLMVAAGHQAEEAVAKAIEDNRGNYILAV 144 Query: 121 EGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPID 180 EG P+ + G++C +GR ++ LK A A AIIAWG+CA GCVQAA PNPT A P+ Sbjct: 145 EGAIPVKDGGIYCCIAGRTAVDMLKEEAKHAKAIIAWGSCAVNGCVQAANPNPTGAVPVQ 204 Query: 181 KVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAH 240 +I DKPII VPGCP I +VM+ +IT+++TF+RLP++D GRP FYG RIHDKC RRA+ Sbjct: 205 DIIKDKPIINVPGCPAIAEVMAGVITHVLTFERLPELDSQGRPKAFYGHRIHDKCNRRAY 264 Query: 241 FDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAEN 300 FDAG FV+++DD A++G+CLYK+GCKGP TYN+CS+ WN G+S+PI+SGH C+GC+E Sbjct: 265 FDAGMFVENFDDQGAKEGWCLYKLGCKGPNTYNSCSNLEWNGGLSYPIKSGHPCIGCSEF 324 Query: 301 GFWDR---GSFYSRVVDIPQMGTHSTADTVGLTALGVVAAAVGVHAVASAVDQRRRHNQQ 357 GFWD S Y+ + ++P + D G A+G A VHA SAV +++ Q+ Sbjct: 325 GFWDNTGGTSMYAHLSEVPGLKIGVNVDAFGAAAVGAAIAGAAVHAGLSAVTKKQMDRQE 384 Query: 358 PTE 360 + Sbjct: 385 NEK 387 >UniRef50_O33405 Uptake hydrogenase small subunit n=221 Tax=Bacteria RepID=MBHS_OLICO Length = 360 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 231/327 (70%), Positives = 276/327 (84%) Query: 1 MNNEETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGL 60 M ETFY+ MRRQGVTRRSFLK+CSL AT+LGLG +IA A+E KPR PV+W+HGL Sbjct: 1 MTPTETFYEVMRRQGVTRRSFLKFCSLTATALGLGPAYTSEIAHAMETKPRTPVLWLHGL 60 Query: 61 ECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAV 120 ECTCC+ESFIRSAHPL KDV+LS+ISLDYDDTLMAAAG QAE D I +Y G YILAV Sbjct: 61 ECTCCSESFIRSAHPLVKDVVLSMISLDYDDTLMAAAGHQAEAALADTIERYKGNYILAV 120 Query: 121 EGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPID 180 EGNPPL E GMFCI G+PF+++L+ AA A AII+WG+CAS GCVQAARPNPT+ATP+ Sbjct: 121 EGNPPLNEDGMFCIIGGKPFVDQLRYAAKHAKAIISWGSCASHGCVQAARPNPTRATPVH 180 Query: 181 KVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAH 240 +VITDKPIIKVPGCPPI +VM+ +ITYM+TF +LP++DR GRP MFY QRIHDKCYRR H Sbjct: 181 QVITDKPIIKVPGCPPIAEVMTGVITYMLTFGKLPELDRTGRPKMFYSQRIHDKCYRRPH 240 Query: 241 FDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAEN 300 FDAG+FV+S+DD+ AR+GYCLYK+GCKGPTTYNACS+ RWN+G SFPIQ+GHGC+GC+E Sbjct: 241 FDAGQFVESFDDEGARRGYCLYKVGCKGPTTYNACSTIRWNEGTSFPIQAGHGCIGCSEE 300 Query: 301 GFWDRGSFYSRVVDIPQMGTHSTADTV 327 GFWD+GS+Y+R+ DI Q G + AD + Sbjct: 301 GFWDKGSWYARLQDIHQFGIEANADQI 327 >UniRef50_C1DUF2 Quinone-reactive Ni/Fe-hydrogenase small chain (Membrane-bound hydrogenase small subunit) (Hydrogen:quinoneoxidoreductase) n=3 Tax=Bacteria RepID=C1DUF2_SULAA Length = 416 Score = 470 bits (1211), Expect = e-131, Method: Composition-based stats. Identities = 148/353 (41%), Positives = 212/353 (60%), Gaps = 6/353 (1%) Query: 7 FYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCT 66 F + + ++RR F K+ S+ +L L P +A A E R+PV+WI+ +C T Sbjct: 56 FDEYLSMWDISRRDFFKWVSMMTATLMLPPSFEPLVAQAAEVMNRVPVIWINIQDCDGNT 115 Query: 67 ESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPL 126 E+ IRS+ P ++IL +S++Y +TLMAAAG QAE+ ED + + G+Y+L VEG+ P+ Sbjct: 116 EALIRSSAPTVDELILDYLSIEYQETLMAAAGDQAEKCLEDAVKTFKGQYLLFVEGSIPV 175 Query: 127 GEQGMFCISSG-RPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITD 185 + F +++++R A A A+IA G CAS+G V AA PNPT A + V++ Sbjct: 176 KMEYAFTTGRHPETGVQRVRRLAKDAKAVIAVGACASFGGVPAAYPNPTGAVGVMDVVSG 235 Query: 186 KPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGE 245 P++ +P CP P + +I + V LP++D + RP +G RIHD C RRAHFDAGE Sbjct: 236 VPVVNIPACPANPVNIVGVIMHYVLTGSLPELDSLKRPKFAFGYRIHDNCERRAHFDAGE 295 Query: 246 FVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDR 305 FV+ W D+ A+ +CLYKMGCKGP T+N CS R+NDG ++PI G GC+GC+E FWD+ Sbjct: 296 FVEEWGDEGAKNNFCLYKMGCKGPFTFNNCSIVRYNDGTNWPIGVGRGCIGCSEPDFWDK 355 Query: 306 GSFYSRVV--DIPQM---GTHSTADTVGLTALGVVAAAVGVHAVASAVDQRRR 353 + V DI G ST D VGLT L A +G HAV SA+ ++ Sbjct: 356 YATERPVAASDIRPPAIGGVESTVDKVGLTILTATAIGIGAHAVMSALAGKKE 408 >UniRef50_D1BNB1 Hydrogenase (NiFe) small subunit HydA n=5 Tax=Veillonellaceae RepID=D1BNB1_VEIPT Length = 379 Score = 467 bits (1202), Expect = e-130, Method: Composition-based stats. Identities = 186/371 (50%), Positives = 245/371 (66%), Gaps = 3/371 (0%) Query: 1 MNNEETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGL 60 +N+ T +Q R ++RR+F+K C LGL M A E V+W+HG Sbjct: 5 INSLWTLFQERR---LSRRTFMKSCVALTAILGLPPTMLDTFVKAAETTELPTVIWLHGH 61 Query: 61 ECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAV 120 ECT C+ESFIRS+ P DVIL++ISL+YDDTL AA+G EE E II + GKYILAV Sbjct: 62 ECTGCSESFIRSSSPFTSDVILNMISLEYDDTLAAASGAPLEEHLEKIIKEKAGKYILAV 121 Query: 121 EGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPID 180 EG PL E G++C GR F E L AA GA+AII +G+CASWG +QAA+PNPT + Sbjct: 122 EGGVPLDEDGVYCTVGGRTFKESLLEAAKGAAAIIEYGSCASWGGIQAAKPNPTNTVSVS 181 Query: 181 KVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAH 240 V++ KPIIKVPGCPPIP+VM+ +I + F ++P +D GRP FYG RIHD CYRRA Sbjct: 182 SVVSGKPIIKVPGCPPIPEVMTGVIMHYALFGQIPPLDSQGRPKQFYGNRIHDTCYRRAF 241 Query: 241 FDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAEN 300 FD+G FV+ +DDDA++ G+CLYK+GC+GP TYN+C + RW +G+S+PIQSGHGC+GC+E Sbjct: 242 FDSGLFVEKFDDDASKSGWCLYKVGCRGPQTYNSCGNLRWWNGLSYPIQSGHGCIGCSEK 301 Query: 301 GFWDRGSFYSRVVDIPQMGTHSTADTVGLTALGVVAAAVGVHAVASAVDQRRRHNQQPTE 360 GFWD FY R+ DIP T +TADT+G A AAV VH A+ + ++ Sbjct: 302 GFWDNDVFYKRLPDIPLANTITTADTIGTVAAVGATAAVIVHGAATLTRNKILDMKEEKR 361 Query: 361 TEHQPGNEDKQ 371 + Q ++K+ Sbjct: 362 LKEQGLWDEKK 372 >UniRef50_C3XGH6 Ni/Fe-hydrogenase small subunit n=8 Tax=Proteobacteria RepID=C3XGH6_9HELI Length = 425 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 146/357 (40%), Positives = 209/357 (58%), Gaps = 11/357 (3%) Query: 2 NNEETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLE 61 + + + ++ +G+ RR F+K+ ++ S+GL A AP A A E R+P++W+H E Sbjct: 70 KSGKDLNEVLQEKGIQRRDFMKWAAVVTASIGLPATFAPLTARAAELADRVPIIWLHMAE 129 Query: 62 CTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVE 121 CT C+ES +RS P +I +S++Y +T+MAA+G QAE+ ED + +Y+G+Y++ VE Sbjct: 130 CTGCSESLLRSEDPCIDSIIFDYVSMEYHETIMAASGYQAEKSLEDAVKKYDGRYVMMVE 189 Query: 122 GNPPLGEQGMFCISS--GRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPI 179 G P + F GR E+ + A A+AI A GTC+S+G VQAA PNPT A P+ Sbjct: 190 GGIP-KDTEYFLTIGASGRTGAEECRHVAKHAAAIFAIGTCSSFGGVQAAAPNPTNAHPL 248 Query: 180 DKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRA 239 +I DK +I VPGCPP + + + F + +D RP YG RIHD C RR Sbjct: 249 SDII-DKKVINVPGCPPNEKNIVGTLMQHILFGDM-ALDAFHRPKWAYGHRIHDLCERRG 306 Query: 240 HFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAE 299 FDAGEFVQ + D+ A+ GYCLYK+GCKGP T+N CS R+N ++PI +GHGC+GC+E Sbjct: 307 RFDAGEFVQHFGDENAKNGYCLYKVGCKGPYTFNNCSKLRFNSHTNWPIGAGHGCIGCSE 366 Query: 300 NGFWDRGSFYSRVVD------IPQMGTHSTADTVGLTALGVVAAAVGVHAVASAVDQ 350 FWD S + + G TAD VG+ LG A + HA+ S + Sbjct: 367 PHFWDTMSPFEVPLGNRYQTAFRGAGADHTADRVGMVILGATAIGIAAHAMLSGAIK 423 >UniRef50_Q3ABV6 [Ni/Fe] hydrogenase, small subunit n=3 Tax=Clostridia RepID=Q3ABV6_CARHZ Length = 354 Score = 444 bits (1143), Expect = e-123, Method: Composition-based stats. Identities = 130/348 (37%), Positives = 194/348 (55%), Gaps = 14/348 (4%) Query: 13 RQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALEN--KPRIPVVWIHGLECTCCTESFI 70 ++RR FLK+ S A +LGL + P++A+ALEN K + PV+WI G CT C+ S + Sbjct: 1 MNKISRREFLKFASFTAATLGLSQSV-PEVAYALENAAKGQPPVIWIQGASCTGCSVSLL 59 Query: 71 RSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQG 130 S HP K+++L +I+L + + AA G A E F + GK+ L VEG P + G Sbjct: 60 NSVHPDIKEILLEIINLKFHPNISAATGHVAVEAFLGEAEKNKGKFFLVVEGAVPTKDNG 119 Query: 131 MFCISSGRP-----FIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITD 185 ++C + F E +K A A+IA GTCA++G + AA PNPT P+ +VI Sbjct: 120 VYCSIGEKDGRELYFSEVVKELGEKAKAVIAIGTCAAFGGIPAADPNPTGCVPVTEVIDP 179 Query: 186 KPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGE 245 K ++ +PGCPP PD + +++ ++ LP D+ GRP MFY IHD C RR +FD Sbjct: 180 KKVLNIPGCPPHPDWFVGSLAHVLLYNELPKTDKFGRPKMFYEGIIHDNCPRRQYFDNSI 239 Query: 246 FVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDR 305 F + + + CL +GCKGP T++ C + WN GV++ I++GH C+GC E GF D+ Sbjct: 240 FAKDFSEPG-----CLLLLGCKGPVTHSDCPTRLWNGGVNWCIKAGHPCIGCTEPGFPDK 294 Query: 306 -GSFYSRVVDIPQMGTHSTADTVGLTALGVVAAAVGVHAVASAVDQRR 352 G Y ++ +I G ++ADT G A +G H + + R Sbjct: 295 TGPIYEKMPEIKLPGISASADTFGEVVGAATAIGLGAHLIGNIATGRL 342 >UniRef50_A7BI79 Ni,Fe-hydrogenase small subunit n=2 Tax=Aquificaceae RepID=A7BI79_HYDTH Length = 345 Score = 444 bits (1142), Expect = e-123, Method: Composition-based stats. Identities = 165/351 (47%), Positives = 221/351 (62%), Gaps = 7/351 (1%) Query: 5 ETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTC 64 E+ Y RR+G TRR FLK L + LG + ALE KP+ V+W+ +C Sbjct: 2 ESLYHIYRRRGYTRRDFLKSVLLLSAVLGFPPTSFGQAVKALELKPKPVVIWLEFQDCAG 61 Query: 65 CTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNP 124 CTESFIRS L DV+L ISL+Y +TLM+ +G AEE + I +Y GKYIL VEG+ Sbjct: 62 CTESFIRSTSILPSDVLLDYISLEYHETLMSPSGFYAEEAKREAIEKYKGKYILIVEGSV 121 Query: 125 PLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVIT 184 +G++C SG+ +E LK AA A +IA G+CASWG + A PNPT A P+ +++ Sbjct: 122 SPRNKGVYCTVSGKSNVELLKEAAQNAGLVIAVGSCASWGGIPHAEPNPTGAVPVSQILG 181 Query: 185 DKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAG 244 D+ ++ +PGCPPI DVM A+I V + P++D MGRP FYGQ IHD+CYRR ++AG Sbjct: 182 DRQVVNIPGCPPISDVMVAVIAGFVITGKPPELDSMGRPKTFYGQTIHDRCYRRPFYNAG 241 Query: 245 EFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWD 304 + S+DD++ARKGYCLYK+GCKGP T NAC++ RWN G+SFPIQSGH C GC+E FWD Sbjct: 242 KLAGSFDDESARKGYCLYKLGCKGPITRNACATIRWNGGLSFPIQSGHPCFGCSEPNFWD 301 Query: 305 RGSFYSRVVDIPQMGTHSTADTVGLTALGVVAAAVGVHAVASAVDQRRRHN 355 RG YS P G+ L VA V + A ++A++++ R Sbjct: 302 RGFIYS-----PLSVVEGGFGWKGI--LAGVATGVALGAASAAINKKFREK 345 >UniRef50_A8LH34 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Frankia sp. EAN1pec RepID=A8LH34_FRASN Length = 400 Score = 441 bits (1135), Expect = e-122, Method: Composition-based stats. Identities = 155/366 (42%), Positives = 220/366 (60%), Gaps = 10/366 (2%) Query: 10 AMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTESF 69 + GV RRSFLK+C+ +L L A +AP++A+AL+ R V+W+ +C +E+F Sbjct: 12 RLADAGVDRRSFLKFCAGITATLALPAQLAPRVAYALDKVDRPTVIWLEFQDCAGDSEAF 71 Query: 70 IRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQ 129 +RS +P A D+IL +ISLDY +T+MAA+GT AE+ +D + G +++ VEG+ P G Sbjct: 72 LRSRNPSAADLILGMISLDYHETVMAASGTAAEKARDDAVA--KGGHLVVVEGSIPTGIP 129 Query: 130 GMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPII 189 G C G+ + L+ A GA+ II GTC+++G + AA PNPT A ++ V+ P++ Sbjct: 130 G-ACTIGGKSAEDILREAVRGAAGIINVGTCSAFGGIPAAGPNPTGAVRVEDVVGGVPVV 188 Query: 190 KVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQS 249 + GCP D ++A I + +TF P DR RPL YGQRIHD C RR HFDAGEF + Sbjct: 189 NLTGCPVNADNLTATIVHHLTFGEFPARDRFSRPLFAYGQRIHDTCQRRGHFDAGEFAEQ 248 Query: 250 WDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGS-F 308 W D R G+CLY++GCKGP+T++ C S R+N G S+P+ +GHGC+GC+E GFWD S F Sbjct: 249 WGDAGHRNGWCLYRLGCKGPSTFHNCPSVRFNGGTSWPVAAGHGCVGCSEPGFWDTMSPF 308 Query: 309 YSRVVDIPQMGTHSTADTVGLTALGVVAAAVGVHAVASAVDQR---RRHNQQP---TETE 362 Y R+ + G TAD +G+ L A H V V R RR Q E + Sbjct: 309 YDRLPHVATSGFDLTADRIGVGVLAATATGFAAHGVGKVVQHRVAARREKQAARDLVEDD 368 Query: 363 HQPGNE 368 P +E Sbjct: 369 EAPTDE 374 >UniRef50_C6NZV2 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Proteobacteria RepID=C6NZV2_9PROT Length = 371 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 145/308 (47%), Positives = 206/308 (66%), Gaps = 1/308 (0%) Query: 5 ETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTC 64 T + + ++G++RR FL++C+ A L L MA +A A+ R V+W+ ECT Sbjct: 12 GTVGEGLAQRGISRREFLQFCTSLAALLALPPSMASVMAEAISKARRQSVIWLSFQECTG 71 Query: 65 CTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNP 124 CTES RS P + +I +ISLDY TL AA+G AE + GKY++ V+G+ Sbjct: 72 CTESITRSHSPTLESLIFEMISLDYHHTLQAASGEAAEHARLQAMKDNEGKYLVIVDGSI 131 Query: 125 PLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVIT 184 P+G G + +G + L A GA+AI+A GTCA++G + A PNPT A P+ ++ Sbjct: 132 PMGNPG-YSAIAGISNHDMLVETAKGAAAIVAVGTCATYGGIPMADPNPTGAVPVSDIVK 190 Query: 185 DKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAG 244 DKPII VPGCPPIP VM+ ++ + +TF +P++D +GRP FYG+ IHD+CYRR +D G Sbjct: 191 DKPIINVPGCPPIPVVMTGVLAHFLTFGGIPELDALGRPKSFYGETIHDRCYRRPFYDQG 250 Query: 245 EFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWD 304 +F +++DD+AAR G+CL+K+GCKGP TYNAC++T+WNDG SFPI+SGHGC+GC+E FWD Sbjct: 251 KFAETFDDEAARNGWCLFKLGCKGPVTYNACATTKWNDGTSFPIESGHGCIGCSEPKFWD 310 Query: 305 RGSFYSRV 312 G FY + Sbjct: 311 AGPFYKAL 318 >UniRef50_P31884 Quinone-reactive Ni/Fe-hydrogenase small chain n=12 Tax=Bacteria RepID=MBHS_WOLSU Length = 354 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 156/354 (44%), Positives = 208/354 (58%), Gaps = 10/354 (2%) Query: 11 MRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFI 70 + +G+ RR F+K+ L L A P A A E R+PV+W+H ECT C+ES + Sbjct: 2 LEEKGIERRDFMKWAGAMTAMLSLPATFTPLTAKAAELADRLPVIWLHMAECTGCSESLL 61 Query: 71 RSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQG 130 R+ P +I ISL+Y +T+MAAAG QAE E I +Y G+Y+L VEG P G Sbjct: 62 RTDGPGIDSLIFDYISLEYHETVMAAAGWQAEHNLEHAIEKYKGRYVLMVEGGIPAGSSE 121 Query: 131 MFCISS--GRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI 188 + G E + A+A A+AI A G+C+S+G VQAARPNPT A P+ KV T+KP+ Sbjct: 122 FYLTVGPHGTTGAEHARHASANAAAIFAIGSCSSFGGVQAARPNPTNAQPLSKV-TNKPV 180 Query: 189 IKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQ 248 I VPGCPP + + + + F LP VD RP+ YG RIHD C RR FDAGEFVQ Sbjct: 181 INVPGCPPSEKNIVGNVLHFILFGTLPSVDAFNRPMWAYGLRIHDLCERRGRFDAGEFVQ 240 Query: 249 SWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGSF 308 + D+ A+KGYCLYK+GCKGP T+N CS R+N S+P+Q+GHGC+GC+E FWD Sbjct: 241 EFGDEGAKKGYCLYKVGCKGPYTFNNCSKLRFNQHTSWPVQAGHGCIGCSEPDFWDTMGP 300 Query: 309 YSRV-------VDIPQMGTHSTADTVGLTALGVVAAAVGVHAVASAVDQRRRHN 355 + +G TAD +G+T L A V HAV S + + + +N Sbjct: 301 FEEPVANRLYATAFDGLGADKTADKIGITLLAATAVGVAAHAVLSMMVKDKENN 354 >UniRef50_A6DCC1 NI/FE-HYDROGENASE SMALL SUBUNIT n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DCC1_9PROT Length = 369 Score = 429 bits (1104), Expect = e-119, Method: Composition-based stats. Identities = 131/315 (41%), Positives = 201/315 (63%), Gaps = 4/315 (1%) Query: 1 MNNEETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGL 60 ++ ++ + + +G++RR FLK+ S+ LGL P +A ++ +IPV+W++ Sbjct: 15 LSPDKNIEKILEVEGISRRDFLKWVSVTTAMLGLPGFFEPLVAQSINALNKIPVIWMNYQ 74 Query: 61 ECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAV 120 +C +ES +R++ P ++I++LISL++ + LMA +GTQAE E+ I Y G+Y+L V Sbjct: 75 DCAGNSESILRASKPTIDEIIINLISLEFHELLMAPSGTQAENQLEETIQNYEGEYLLFV 134 Query: 121 EGNPPLGEQGMFCISS--GRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATP 178 EG+ PL + G++ G + + L R A+ A AIIA G CAS+G V AA PNPT AT Sbjct: 135 EGSIPLADNGVYGTIGPSGETYKDHLLRLASKAKAIIAVGNCASFGGVVAANPNPTGATG 194 Query: 179 IDKV-ITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYR 237 + V + PII +P CP P+ M ++ LP++D + RPL Y RIHD+C R Sbjct: 195 VMGVDGINVPIINLPACPVNPETMIGVLIMYALTGELPELDSLKRPLFAYASRIHDRCER 254 Query: 238 RAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGC 297 R HFDAGEFV+S+ D+A++ GYCLYK+GCKGP T+N C + ++ND S+P+ +GHGC+GC Sbjct: 255 RVHFDAGEFVESFGDNASQSGYCLYKVGCKGPFTFNNCPTVKFND-TSWPVDAGHGCIGC 313 Query: 298 AENGFWDRGSFYSRV 312 +E GF D+ + + Sbjct: 314 SEPGFVDKFGSFEKP 328 >UniRef50_A7NNQ8 Hydrogenase (NiFe) small subunit HydA n=12 Tax=Bacteria RepID=A7NNQ8_ROSCS Length = 417 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 136/323 (42%), Positives = 193/323 (59%), Gaps = 2/323 (0%) Query: 7 FYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCT 66 + + +GV+RR FLK+C+ + +L L + P+IA AL R+PVVW+ +C T Sbjct: 8 LEERLAARGVSRRQFLKFCAAMSAALALPSTFTPRIARALNTAERLPVVWLEFQDCAGNT 67 Query: 67 ESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPL 126 ESF+R+ P D++L ISL+Y +T+MA AG +AE + ++ Y G+YI VEG+ P+ Sbjct: 68 ESFLRAESPGVADIVLEQISLEYHETIMAPAGHRAEHSLDAVVENYPGQYIAIVEGSIPI 127 Query: 127 GEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITD- 185 G++C GR + +R + A A IA G CA G AA PNPT A + + + Sbjct: 128 ANGGVYCTIGGRTALSIAERVCSNALATIAVGACAWDGGWPAASPNPTGAVGVRQAVPGL 187 Query: 186 KPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGE 245 K +I +PGCP ++A+I + +TF +LP D GRP YGQ IH+ C RR HFD+G Sbjct: 188 KNLINLPGCPMNVINLTAVIVHYLTFKQLPATDEQGRPFFAYGQLIHNNCERRGHFDSGR 247 Query: 246 FVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDR 305 FV+ W D+ R G+CLYKMGCKGP T + C + WN +PI +GHGC+GC FWD Sbjct: 248 FVERWGDEGHRLGWCLYKMGCKGPQTLSNCPAVGWNGTSYWPIGAGHGCVGCMSPRFWDT 307 Query: 306 GS-FYSRVVDIPQMGTHSTADTV 327 S FY R+ ++ G TADT+ Sbjct: 308 MSPFYERLPNVEGFGIEVTADTL 330 >UniRef50_C2KSS0 Hydrogenase (Acceptor) n=3 Tax=Bacteria RepID=C2KSS0_9ACTO Length = 423 Score = 422 bits (1085), Expect = e-117, Method: Composition-based stats. Identities = 145/351 (41%), Positives = 218/351 (62%), Gaps = 14/351 (3%) Query: 4 EETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMA----------PKIAWALENKPRIP 53 E T + + + GV+RR F+K+CS A +G + IA L + Sbjct: 25 EGTLAENIAKAGVSRRDFMKFCSSLAAIFAVGTPVMANAKALRPSTEHIAKVLGEVKKPL 84 Query: 54 VVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYN 113 V W+ ECT C ES +RS ++V+L+L+S++Y++ +MAA+G AE+ E++ Sbjct: 85 VAWLQLQECTGCMESTLRSGGTTVEEVVLNLLSVNYNELVMAASGEAAEKALEEV---NA 141 Query: 114 GKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNP 173 +IL V G+ P+ + G++C G+ + L+ +A AS I+A G CA +G VQAARPNP Sbjct: 142 QDHILVVNGSIPVKDGGIYCTIGGKSAQQVLEESAENASMILAVGACAVYGSVQAARPNP 201 Query: 174 TQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHD 233 T A +D++I DKP+I V GCPPI +V++A + Y++T + P++D GRPL YGQRIHD Sbjct: 202 TGAVGVDEIIKDKPVINVAGCPPIGEVITATLAYILTKGKAPELDAEGRPLFAYGQRIHD 261 Query: 234 KCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHG 293 C RR HFDAG+FV+++DD AR+G+CLY +GCKGP+T++ C +WN +PI +GH Sbjct: 262 SCPRRPHFDAGQFVRTFDDAGAREGWCLYDVGCKGPSTFSPCPIVQWNLKSGWPIGAGHP 321 Query: 294 CLGCAENGFWDRG-SFYSRVVDIPQMGTHSTADTVGLTALGVVAAAVGVHA 343 C+GC E F+DR FYS++ ++ G +TA+ +G +VA V VHA Sbjct: 322 CIGCTERDFYDRFTPFYSKLPNVTGFGIEATAEQIGWGMTALVAGGVAVHA 372 >UniRef50_B2UPQ9 Hydrogenase (NiFe) small subunit HydA n=8 Tax=Bacteria RepID=B2UPQ9_AKKM8 Length = 398 Score = 418 bits (1074), Expect = e-115, Method: Composition-based stats. Identities = 161/380 (42%), Positives = 232/380 (61%), Gaps = 14/380 (3%) Query: 3 NEETFYQAMRRQGVTRRSFLKYCSLAATSLGL-----GAGMAPKIAWALENKPRIPVVWI 57 ET + M R+GV+RR F K+C + +G+ G A +IA + R V+W+ Sbjct: 19 PGETLGEHMERRGVSRREFNKWCLKMISLMGVATVTGGISNAQEIADKMAALKRPVVIWL 78 Query: 58 HGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYI 117 ECT C ES IRS + D++LS +S+ Y + LMA +G A + ED I + +I Sbjct: 79 QLQECTGCLESTIRSYNEEIGDMVLSAVSMPYVELLMAPSGEAANQALEDAIRE---PHI 135 Query: 118 LAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQAT 177 L + G+ P+ + G++C +G L+ A AS I+A G+CA +G +QAARPNPT A Sbjct: 136 LVINGSVPVNDGGVYCTVAGDTVENMLRHCAENASHILAVGSCAYFGSIQAARPNPTGAV 195 Query: 178 PIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYR 237 I ++TD+ +I VPGCPPI DV++A+I Y++TFDR P+ D RPLM YG RIH+ C R Sbjct: 196 GIRDILTDRTVINVPGCPPIGDVITAVIMYILTFDRAPECDLESRPLMAYGTRIHNNCPR 255 Query: 238 RAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGC 297 RAHFDAG+FV +DD+ AR+ +CLYK+GCKGP T++ C +WN GVSFPIQSGH C+GC Sbjct: 256 RAHFDAGQFVNVFDDENARECFCLYKVGCKGPDTFSPCPIVKWNGGVSFPIQSGHPCIGC 315 Query: 298 AENGFWDRG-SFYSRVVDIPQMGTHSTADTVGLTALGVVAAAVGVHAVASAVDQRRRHNQ 356 E F+DR FY + ++ G ++A+ +G + AA+ HAV SA+ R++H + Sbjct: 316 TELYFFDRMTPFYKTLPNVNGFGVEASANIIGAVGVAGAGAAIAAHAVGSAIHYRKQHMK 375 Query: 357 QPTET-----EHQPGNEDKQ 371 + PG+ DK+ Sbjct: 376 EEANVSLPAFGDAPGSPDKE 395 >UniRef50_A5GFC8 Hydrogenase (NiFe) small subunit HydA n=6 Tax=Proteobacteria RepID=A5GFC8_GEOUR Length = 378 Score = 418 bits (1074), Expect = e-115, Method: Composition-based stats. Identities = 139/301 (46%), Positives = 193/301 (64%), Gaps = 4/301 (1%) Query: 1 MNNEETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGL 60 M EE F A GV+RRSF+K C A +GL M K+A A+E V+W+H Sbjct: 6 MKKEEDFLCA----GVSRRSFMKTCITATAMMGLPFSMHTKVAEAMEKNGNPSVIWLHFQ 61 Query: 61 ECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAV 120 ECT C+ES +RS HP +IL +ISLDY +TLMA +G QAE+ D + GKY+L V Sbjct: 62 ECTGCSESLLRSTHPTISTLILDMISLDYHETLMAGSGAQAEKSLHDSMLANKGKYLLVV 121 Query: 121 EGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPID 180 EG P E G++C G+ +E L+ AA+ A+AII+ GTCAS+G +Q+ PNPT A + Sbjct: 122 EGAIPTKESGIYCKVGGKTALESLQHAASNAAAIISIGTCASYGGIQSVGPNPTGAVGVR 181 Query: 181 KVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAH 240 ++ DKPII +PGCPP P + + + Y +TF ++P++D +GRP YG++IH+ C RR H Sbjct: 182 DIVKDKPIINIPGCPPSPYNLLSTVMYYLTFKKIPELDALGRPKFAYGRKIHEHCERRPH 241 Query: 241 FDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAEN 300 FDAG F +++ DD +GYCL+K+GCKGP TY CS R+N+ +P+ GH C+GC E Sbjct: 242 FDAGRFAKAYGDDTHAQGYCLFKLGCKGPATYANCSVQRFNEVGVWPVSVGHPCIGCTEP 301 Query: 301 G 301 Sbjct: 302 D 302 >UniRef50_Q06173 Periplasmic [NiFe] hydrogenase small subunit 1 n=17 Tax=Bacteria RepID=PHNS1_DESVH Length = 317 Score = 413 bits (1062), Expect = e-114, Method: Composition-based stats. Identities = 125/309 (40%), Positives = 188/309 (60%), Gaps = 4/309 (1%) Query: 5 ETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTC 64 E + + R+GV+RR FLK+C+ A ++G+G AP++A AL R VV++H ECT Sbjct: 10 EGAEERLARRGVSRRDFLKFCTAIAVTMGMGPAFAPEVARALTGSRRPSVVYLHNAECTG 69 Query: 65 CTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNP 124 C+ES +R+ P ++IL ISLDY +T+MAAAG AE + +G +I VEG Sbjct: 70 CSESVLRAFQPYLDELILDTISLDYHETIMAAAGDAAEAALHQAVANPDG-FICIVEGAI 128 Query: 125 PLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVIT 184 P + G++ + + A A+IA+GTCA++G VQAA+PNPT A ++ + Sbjct: 129 PTADNGIYGKVANHTMLSICSDIVPKAKAVIAYGTCATFGGVQAAKPNPTGAKGLNDALK 188 Query: 185 DKPI--IKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFD 242 + I + GCPP P + + Y + + P++D RPLMF+GQ +HD C R HFD Sbjct: 189 HLGVNAINLAGCPPNPYNLVGTLVYYLKNNAAPEMDEFNRPLMFFGQSVHDNCPRLKHFD 248 Query: 243 AGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGF 302 AGEF S++ + ARKG+CLY++GCKGP+T N C ++N ++P+++GH C+GC+E F Sbjct: 249 AGEFAPSFESEEARKGWCLYELGCKGPSTMNNCPKIKFNQ-TNWPVEAGHPCIGCSEPDF 307 Query: 303 WDRGSFYSR 311 WD S + Sbjct: 308 WDEKSPFYE 316 >UniRef50_B4U5S1 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U5S1_HYDS0 Length = 320 Score = 403 bits (1036), Expect = e-111, Method: Composition-based stats. Identities = 159/313 (50%), Positives = 217/313 (69%), Gaps = 1/313 (0%) Query: 5 ETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTC 64 ET+Y + +GV R F+ + + LG+ I AL+ KPRIPV+W HGLECTC Sbjct: 2 ETYYDFLAGRGVRYREFISFSTKICGLLGINPNEINDIINALKQKPRIPVLWFHGLECTC 61 Query: 65 CTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNP 124 C+ES +RS+ P+ D++ SLISL+YDD + A+ G + II QY G YILA+EG+ Sbjct: 62 CSESLMRSSSPVFSDMV-SLISLEYDDLISASCGENLLNYKKKIIEQYKGNYILAIEGSI 120 Query: 125 PLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVIT 184 E G C+ GR F E+L AA GA AIIAWG+CAS+GCVQ A PNPT+++ +D +I Sbjct: 121 TEFEDGACCMVGGRSFNEELLEAAEGAKAIIAWGSCASFGCVQVAYPNPTKSSSVDTIIK 180 Query: 185 DKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAG 244 +KPI+KVPGCPPIP+VM+++I YM+ D LP +D RP MFYG IHD CYR+ ++A Sbjct: 181 NKPIVKVPGCPPIPEVMASVIVYMLLKDELPPLDSKLRPKMFYGMTIHDTCYRKNFYNAN 240 Query: 245 EFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWD 304 +F + +DD+ ++ G+CLYK+GCKGP+TYNACSS W +G+SFPI+SGHGC+GC++ GFWD Sbjct: 241 KFAERFDDEGSKAGHCLYKLGCKGPSTYNACSSIGWYNGLSFPIKSGHGCIGCSQEGFWD 300 Query: 305 RGSFYSRVVDIPQ 317 + + PQ Sbjct: 301 KTMYKEEAPITPQ 313 >UniRef50_C0QEJ1 HynB n=4 Tax=Deltaproteobacteria RepID=C0QEJ1_DESAH Length = 330 Score = 403 bits (1035), Expect = e-111, Method: Composition-based stats. Identities = 125/313 (39%), Positives = 184/313 (58%), Gaps = 7/313 (2%) Query: 2 NNEETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKP---RIPVVWIH 58 E++FY+ + +GV+RR FLKYC++ S+GL A ++A ++E R VVW+H Sbjct: 20 TEEKSFYERLEGKGVSRRDFLKYCTVMTASMGLSASCVGQVASSIEKAASGTRPSVVWLH 79 Query: 59 GLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYIL 118 ECT C+E+F+R+ P +IL IS++Y +T+MAA+G QAE+ E I + GK+I Sbjct: 80 FGECTGCSEAFLRT--PNVGAIILETISVEYHETIMAASGHQAEKSLEQAIKTHKGKFIC 137 Query: 119 AVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATP 178 VEG+ G + GR F+E A+ IA GTCA++G + +A PNP Sbjct: 138 VVEGSIATAYNGAYGKVGGRTFLEIANDVIPKAAVTIALGTCAAYGGIPSAAPNPGGYKG 197 Query: 179 IDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRR 238 + I I + GCPP P + + I + + + ++D +GRPL Y + +HD+C R Sbjct: 198 VKDAI-GVATINISGCPPNPLNLLSTIVKYLNKETI-ELDELGRPLFAYAETVHDRCPRL 255 Query: 239 AHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCA 298 HF+ EFV+ + A GYCLY MGCKGP TYN C + ++NDG SFPIQ+GH C+GC+ Sbjct: 256 KHFENDEFVEEFGSKEAELGYCLYHMGCKGPETYNNCPTAKFNDGTSFPIQAGHPCIGCS 315 Query: 299 ENGFWDRGSFYSR 311 E FWD + + Sbjct: 316 EPDFWDTMTPFYE 328 >UniRef50_Q31DZ5 Ni,Fe-hydrogenase small subunit n=4 Tax=Proteobacteria RepID=Q31DZ5_THICR Length = 813 Score = 393 bits (1010), Expect = e-108, Method: Composition-based stats. Identities = 111/302 (36%), Positives = 177/302 (58%), Gaps = 3/302 (0%) Query: 19 RSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFIRSAHPLAK 78 + F + S+ +L L + ++++ ++PV+W+ +CT +E+FI++ +P Sbjct: 508 QDFNGWVSMMTLNLQLPPEYDNLVCRSIQHLNKVPVIWLELADCTGNSEAFIKTVNPTID 567 Query: 79 DVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISS-- 136 ++IL ISLDY + LMAA+G +E + +I + G YIL VEG PLG G F Sbjct: 568 ELILKFISLDYHELLMAASGPHSETRLDQLIEEDQGDYILIVEGAVPLGMGGNFLRIGPQ 627 Query: 137 GRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPP 196 G LKR A ASA++A G+CA G V AA PNPT A + + + II +PGCP Sbjct: 628 GETGEALLKRVAQHASAVMAVGSCAFDGGVVAAAPNPTGAVGVSEALGRDDIINLPGCPV 687 Query: 197 IPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAAR 256 P + + + + F +P++ +P+ Y R+HD C RR H+DAGEFV+ W D+ A+ Sbjct: 688 NPINVVGTLLHYIMFAEMPELGDNNKPVWAYAPRVHDNCERRGHYDAGEFVKEWGDEGAK 747 Query: 257 KGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGF-WDRGSFYSRVVDI 315 KG+CL++MGCKGP C+ ++N+G S+P+Q GHGC+ C + +D + +V+++ Sbjct: 748 KGWCLFEMGCKGPYADMNCAQMKFNEGTSWPVQVGHGCIACGKGKVAFDEFANNRKVINV 807 Query: 316 PQ 317 P+ Sbjct: 808 PK 809 >UniRef50_B8FWY3 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Desulfitobacterium hafniense RepID=B8FWY3_DESHD Length = 375 Score = 393 bits (1009), Expect = e-108, Method: Composition-based stats. Identities = 99/349 (28%), Positives = 171/349 (48%), Gaps = 15/349 (4%) Query: 16 VTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKP--RIPVVWIHGLECTCCTESFIRSA 73 + RR FLK A + + P++ AL ++P++ + CT + S Sbjct: 2 LNRREFLKLVVKGAILGNFISLVTPELEKALAQGEINKLPIIMVETGTCTGDSISLDNIW 61 Query: 74 HPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFC 133 P D+ ++ YD T+M + G A +V +I +++L V+G+ + G + Sbjct: 62 SPTLSDIFTNITEWRYDWTMMQSQGELAYDVLLEIEKNQAHEFVLLVQGSMIRRDGGHYN 121 Query: 134 ISS---GR--PFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI 188 + G+ ++ ++R A ++A G CA++G A PNPTQ+T + ++ ++ + Sbjct: 122 YAGLENGQLITGLDLVRRLGLKAKYVVAVGHCATYGGPVAGYPNPTQSTGVQNILPERRV 181 Query: 189 IKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQ 248 I V GCP PD + + ++ + P++++ GRP MF+G+ IH+ C RR ++D G F Sbjct: 182 INVSGCPAHPDWIMGTLLHLALYGE-PELEKFGRPKMFFGETIHNNCPRRRYYDQGIFAT 240 Query: 249 SWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGSF 308 CLY++GCKGP TY C RWND ++PI C+GC E G+ D Sbjct: 241 DIGQKE-----CLYRVGCKGPVTYADCPIRRWNDHYNWPIGCNSPCIGCTEPGYPDLMEP 295 Query: 309 Y-SRVVDIP-QMGTHSTADTVGLTALGVVAAAVGVHAVASAVDQRRRHN 355 + + DIP G+ + D +G LG+ +G + ++S R N Sbjct: 296 FTAHFPDIPFPGGSRAATDRIGRGVLGLATLGIGGYFLSSFYKGRLHRN 344 >UniRef50_P13061 Periplasmic [NiFe] hydrogenase small subunit n=63 Tax=Proteobacteria RepID=PHNS_DESDA Length = 315 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 126/308 (40%), Positives = 186/308 (60%), Gaps = 6/308 (1%) Query: 5 ETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTC 64 E + + RQG++RR F+K+C+ A ++G+G A +A AL R VV++H ECT Sbjct: 10 EGGEERLERQGISRRDFMKFCTAVAVAMGMGPAFATDVAAAL-TGRRPSVVYLHAAECTG 68 Query: 65 CTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNP 124 C+E+ +R+ P +IL ISLDY +T+MAAAG AEE + + +G +I VEG Sbjct: 69 CSEALLRTYQPFIDTLILDTISLDYHETIMAAAGEAAEEALQAAVNGPDG-FICLVEGAI 127 Query: 125 PLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVIT 184 P G + +G + K A A+++ GTCA +G +QAA+PNPT A I+ Sbjct: 128 PTGMDNKYGYIAGHTMYDICKNILPKAKAVVSIGTCACYGGIQAAKPNPTAAKGINDCYA 187 Query: 185 DKPI--IKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFD 242 D + I VPGCPP P M + + ++ ++D +GRP+MF+GQ +HD C RR HFD Sbjct: 188 DLGVKAINVPGCPPNPLNMVGTLVAFLKGQKI-ELDEVGRPVMFFGQSVHDLCERRKHFD 246 Query: 243 AGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGF 302 AGEF S++ + ARKG+CLY +GCKGP TYN C +N+ ++P+ +GH C+GC+E F Sbjct: 247 AGEFAPSFNSEEARKGWCLYDVGCKGPETYNNCPKVLFNE-TNWPVAAGHPCIGCSEPNF 305 Query: 303 WDRGSFYS 310 WD + + Sbjct: 306 WDDMTPFY 313 >UniRef50_P69743 Hydrogenase-2 small chain n=130 Tax=Proteobacteria RepID=MBHT_ECO57 Length = 372 Score = 389 bits (1000), Expect = e-107, Method: Composition-based stats. Identities = 123/292 (42%), Positives = 189/292 (64%), Gaps = 1/292 (0%) Query: 11 MRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFI 70 + G+ RR F+K C+ A ++GL + A ++A ++ N R PV+WI ECT CTES + Sbjct: 8 IHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLL 67 Query: 71 RSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQG 130 R+ HP ++++L ISL+Y + L AA G Q EE + + +Y G+Y+L V+G+ PL + G Sbjct: 68 RATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNG 127 Query: 131 MFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIK 190 ++C+ +G P ++ +++AA GA+AIIA G+C++WG V AA NPT A + +V+ K +I Sbjct: 128 IYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVIN 187 Query: 191 VPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSW 250 +PGCPP P A + +++T+ + P +D RP YG+ IH+ C RR HFDAG F + + Sbjct: 188 IPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEF 247 Query: 251 DDDAARKGYCLYKMGCKGPTTYNACSSTRWND-GVSFPIQSGHGCLGCAENG 301 D+ R+G+CLY +GCKGP TY CS+ ++ D G +P+ GH C GC E G Sbjct: 248 GDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEG 299 >UniRef50_D1U6F3 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U6F3_9DELT Length = 328 Score = 388 bits (996), Expect = e-106, Method: Composition-based stats. Identities = 130/319 (40%), Positives = 188/319 (58%), Gaps = 16/319 (5%) Query: 9 QAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTES 68 + + ++GVTRR F+K+C A +G+G APK+A AL + R VVW+H ECT C+ES Sbjct: 14 ERLEKRGVTRRDFMKFCGTVAAVMGMGPAFAPKVAEALTSDTRPDVVWLHNAECTGCSES 73 Query: 69 FIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGE 128 +R+ P +IL ISL+Y +TLMAAAG AE+ D + GKY+ +EG P Sbjct: 74 ILRTVEPYIDALILDYISLNYHETLMAAAGHAAEKALWDTVAA--GKYVAVIEGGVPTAP 131 Query: 129 QGMFC------ISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKV 182 G G +E + A A I +GTCAS+G VQ A PNPT +D++ Sbjct: 132 AGTANEPGGHGKVGGHTMLENTTKVVEKALATITYGTCASYGGVQKAAPNPTACKGVDEL 191 Query: 183 ITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFD 242 KPII VPGCPP P + I Y VT +P++D +GRP+ FYG+ +HD C R+ F+ Sbjct: 192 FPGKPIINVPGCPPNPYSLVGTIVYYVTKG-VPELDSVGRPVAFYGESVHDNCPRQEFFN 250 Query: 243 AGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGF 302 +F S+ + ARKG+CL K+GC+G TYN C + ++N ++P+Q+GH C+GC++ F Sbjct: 251 MDQFAPSFGSEEARKGWCLRKLGCRGVETYNNCPTVKFNQY-NWPVQAGHPCIGCSQPNF 309 Query: 303 WD------RGSFYSRVVDI 315 WD + FY+ + D+ Sbjct: 310 WDGEDWDGKTYFYADLTDL 328 >UniRef50_Q24VQ2 Ni,Fe-hydrogenase small subunit n=2 Tax=Desulfitobacterium hafniense RepID=Q24VQ2_DESHY Length = 319 Score = 383 bits (984), Expect = e-105, Method: Composition-based stats. Identities = 117/307 (38%), Positives = 180/307 (58%), Gaps = 7/307 (2%) Query: 3 NEETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALE-NKPRIPVVWIHGLE 61 E+ YQ + R+GV+RR FLK C+ +LG+ +AP+IA A E N + PV+W+ G Sbjct: 10 PMESGYQRLARRGVSRRDFLKLCTFTCAALGIDLSLAPQIAEAAEANLSKKPVIWMQGQG 69 Query: 62 CTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVE 121 CT C+ES + S P +++IL L+S+ Y TLMAA+G QA + ED I G YIL +E Sbjct: 70 CTGCSESLLSSVDPGPEEIILDLLSVRYHPTLMAASGEQAVQSLEDCIA--QGHYILVLE 127 Query: 122 GNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDK 181 G+ P + +C G+PFIE+ K AA A A+IA G+CA +G + A T A + Sbjct: 128 GSIPTADS-RYCFVEGKPFIEQFKLAAEKAEAVIAVGSCACYGGIPRAG--FTGAAGAQE 184 Query: 182 VITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHF 241 V+ ++ +P CP PD + ++ Y ++ + LP +D + RP +Y +HD CYRR H+ Sbjct: 185 VLEGVKVVNLPSCPVKPDRLVGLLLYYLSHNALPKLDGLNRPEAYYRYTLHDSCYRRWHY 244 Query: 242 DAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENG 301 + GE+++ W++ +CLY GCKG TY C++ WN G +F +G C GC++ Sbjct: 245 EKGEYLEDWNNPDTLD-WCLYHKGCKGQDTYTNCANAWWNGGANFCGYAGSPCAGCSQPE 303 Query: 302 FWDRGSF 308 ++D + Sbjct: 304 YYDGFAP 310 >UniRef50_Q24X54 Hup-type Ni,Fe-hydrogenase small subunit n=3 Tax=Desulfitobacterium RepID=Q24X54_DESHY Length = 362 Score = 383 bits (984), Expect = e-105, Method: Composition-based stats. Identities = 129/367 (35%), Positives = 209/367 (56%), Gaps = 21/367 (5%) Query: 9 QAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKP-RIPVVWIHGLECTCCTE 67 ++ +G++RR F+K + +LGL +AP+ A A+E + PV+W+HG+ECT C+E Sbjct: 5 DFLQARGISRRDFMKLMAATTAALGLPEVLAPQAAKAVEAAMEKPPVIWLHGMECTGCSE 64 Query: 68 SFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLG 127 S + + +P + ++L +S+ Y +T+MAA+G AE+ ++D + + K++L VEG+ P Sbjct: 65 SLLATLNPSIESLVLDTLSIRYHETIMAASGHVAEQAYQDTLDE---KFVLVVEGSVPAS 121 Query: 128 E-QGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWG-CVQAA---RPNPTQATPIDKV 182 E +C+ G+PF E + AAA A A+IA G+CA+ G + A +P + ++ Sbjct: 122 EATDSYCMVGGKPFRETVLEAAAKAQAVIAVGSCATDGAGIPGACEIKP-----IGVREL 176 Query: 183 I----TDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRR 238 + P+I +P CP P+ + I Y +TF +P++D RPL++YG+ +HD C RR Sbjct: 177 LQKHNIATPVINLPCCPVKPNTLIGTIVYYLTFSAVPELDEQARPLIYYGKLLHDNCPRR 236 Query: 239 AHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCA 298 F+AG F+ W+D A+K YCL GCKGP TY C+ WND +F I +G C GC+ Sbjct: 237 GQFEAGNFLSDWNDP-AQKDYCLLLKGCKGPKTYTDCAQVWWNDNANFCINAGSPCSGCS 295 Query: 299 ENGFWDRGSF-YSRVVDIPQMGTH-STADTVGLTALGVVAAAVGVHAVASAVDQRRRHNQ 356 E+GF+ + S Y++ + G ADTVG G +G H +A+ R ++N Sbjct: 296 ESGFYGQFSPLYAKQENFSLPGLGQIHADTVGKVVGGATVVGLGAHLIATVASGRLKNND 355 Query: 357 QPTETEH 363 + E Sbjct: 356 SEQKKED 362 >UniRef50_P61429 Periplasmic [NiFe] hydrogenase small subunit 2 n=9 Tax=Desulfovibrio RepID=PHNS2_DESVH Length = 324 Score = 382 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 124/298 (41%), Positives = 189/298 (63%), Gaps = 5/298 (1%) Query: 16 VTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFIRSAHP 75 +TRR F+K+C + A ++G+G G AP +A AL+ K R VV++HG ECT CTE +RS P Sbjct: 21 MTRREFMKFCGIVAVAMGMGPGFAPAVAEALQAKGRPSVVYMHGAECTGCTEGLLRSIDP 80 Query: 76 LAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCIS 135 +++ +ISLDY +T+MAAAG A ED + G Y+ +EG P + G++ Sbjct: 81 FIDILMMEVISLDYCETVMAAAGRAAHHALEDALRNPAG-YVCTIEGAIPTRKGGVYGQV 139 Query: 136 SGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI--IKVPG 193 G + R A+GA A+IA GTCAS+G +QAA PNP+ A + + + I I + G Sbjct: 140 GGETMLSLFSRVASGAKAVIAMGTCASFGGIQAAAPNPSGAIGVREALAPFGIQPINIAG 199 Query: 194 CPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDD 253 CPP P + +++T +P++D GRP MFYG +HD+C RR HF+A EF ++ Sbjct: 200 CPPNPVNYIGTVVHLLTKG-MPELDSAGRPKMFYGTTVHDQCERRKHFNADEFAPGFESK 258 Query: 254 AARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYSR 311 AR+G+CL+K+GC+GP TYN C + ++N V++P+++G C+GC+E GFWD + +++ Sbjct: 259 EAREGWCLHKLGCRGPYTYNNCPTAQFNQ-VNWPVRAGAPCIGCSEPGFWDALAPFNK 315 >UniRef50_UPI000197A0EB hypothetical protein HcinC1_01015 n=1 Tax=Helicobacter cinaedi CCUG 18818 RepID=UPI000197A0EB Length = 554 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 113/304 (37%), Positives = 168/304 (55%), Gaps = 10/304 (3%) Query: 13 RQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFIRS 72 R V+ + C+ +G+ AP L KP +VW+H ECT C+ESF+R Sbjct: 25 RNEVSIEWVTQICN----LIGIPKDYAPLCEQILSYKPLTRLVWLHMAECTGCSESFLRL 80 Query: 73 AHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMF 132 P + ++L ISL+Y +T+M A G A++ D + + ++IL +EG LGE F Sbjct: 81 DKPGVESLLLEYISLEYHETIMGAVGFNAKQCLHDTLKE---EFILVIEGGVSLGENAYF 137 Query: 133 CISSGRP--FIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIK 190 S + A A AI A GTC+S+G VQAA PNPTQ+ I + PI+ Sbjct: 138 LTSGADSTNGENECLEVARHAQAIFAIGTCSSFGGVQAAYPNPTQSQGISTFLRQ-PIVN 196 Query: 191 VPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSW 250 +PGCPP M + Y + +P D + RPL YG+ +H+ C R+A F++G+FV+S+ Sbjct: 197 IPGCPPSEANMIGSLMYYILLQEIPPCDSLNRPLWSYGKNLHEMCERKAKFESGDFVESF 256 Query: 251 DDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYS 310 DD+ + GYCLYK+GCKGP N C ++N S+P+++GHGC+ C+E FWD Sbjct: 257 DDERLQDGYCLYKVGCKGPYVANNCPKVKFNAKTSWPVRAGHGCIACSEPDFWDSFGKIE 316 Query: 311 RVVD 314 ++ Sbjct: 317 EPIN 320 >UniRef50_D2BG44 Ni/Fe hydrogenase, small subunit n=5 Tax=Dehalococcoides RepID=D2BG44_DEHSV Length = 354 Score = 376 bits (966), Expect = e-103, Method: Composition-based stats. Identities = 111/351 (31%), Positives = 177/351 (50%), Gaps = 28/351 (7%) Query: 11 MRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWAL-ENKPRIPVVWIHGLECTCCTESF 69 M +TRR F++ + + +L LGA P+ E IPV+W+ G C CT S Sbjct: 1 MFNTKLTRRDFVQLAAGSTAALSLGALKLPEFEKMFAEALKEIPVIWLQGAGCNGCTIST 60 Query: 70 IRSAHPLAKDVILS------LISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGN 123 I P +D++L+ +S+ Y T+MAA G A D G ++L +EG+ Sbjct: 61 INVVSPTIQDLLLTSVVPGTHVSMQYHPTIMAAQGDLAMSTITDTAA--KGPFVLVIEGS 118 Query: 124 PPLGEQGMFCISS-----GRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATP 178 PL + G++ G +E + A A A++A GTC+++G + A+ PNPT A Sbjct: 119 VPLKDDGVYAEIGEKDGEGITMLEHVLNLAPKALAVVAAGTCSAFGGITASAPNPTGAKA 178 Query: 179 IDKVITD----KPIIKVPGCPPIPDVMSAIITYMVTFD-RLPDVDRMGRPLMFYGQRIHD 233 + +++ + P++ +PGCPP PD + + ++ D+D MGRP +YG+ +HD Sbjct: 179 VSEILKEHNITTPVVNLPGCPPHPDWVVGTLATVLMSGLDALDLDDMGRPKAYYGKLLHD 238 Query: 234 KCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHG 293 +C RR H++ G F + YCL+ +GCKGP TY CS WN+ + +++ Sbjct: 239 QCPRRGHYEKGLFATKLSEP-----YCLFLVGCKGPVTYADCSDRLWNNKTRWCVEADSP 293 Query: 294 CLGCAENGFWDRGSFYSRVVDIPQMGTHSTADTVGLTALGVVAAAVGVHAV 344 C+GCA GF D S + + P + + +G+ VV A GV AV Sbjct: 294 CIGCAHPGFPDEVSP---MFEAPPVINSTDKLAIGIAGTAVVLTA-GVAAV 340 >UniRef50_Q7VJP5 Putative uncharacterized protein n=3 Tax=Helicobacter RepID=Q7VJP5_HELHP Length = 552 Score = 376 bits (965), Expect = e-103, Method: Composition-based stats. Identities = 116/311 (37%), Positives = 172/311 (55%), Gaps = 12/311 (3%) Query: 6 TFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCC 65 T+ ++ + V S++ + +G+ A L KP +VW+H ECT C Sbjct: 20 TYKESRHKVNVQWVSYI------CSLIGIPKEGVELCAQILSLKPPTRLVWLHLAECTGC 73 Query: 66 TESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPP 125 + SF+R P + V+L I+L+Y +T+M A G A++ + + + ++IL +EG Sbjct: 74 SSSFLRLDKPDIESVLLEYITLEYHETIMGAVGFSAKKSLHNTLDK---EFILVIEGGVS 130 Query: 126 LGEQGMFCISSGRPFI--EKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVI 183 LG F S E+ K A A AI A GTC+S+G VQAA PNPTQ+ ID + Sbjct: 131 LGNHAHFLTSGADSITGEEECKEVAQKAQAIFAVGTCSSFGGVQAAYPNPTQSIGIDSFL 190 Query: 184 TDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDA 243 + + II +PGCPP + I Y + LP D + RP+ YG+ +HD C R+A F++ Sbjct: 191 SQR-IINIPGCPPSEANIIGSILYYILLQELPPTDSLHRPIWSYGKNLHDMCERKAKFES 249 Query: 244 GEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFW 303 G+FVQS+DD GYCLYK+GCKGP +N C ++N S+PIQ+GHGC+ C+E FW Sbjct: 250 GDFVQSFDDPHLEDGYCLYKVGCKGPYVFNNCPKVKFNAKTSYPIQAGHGCIACSEPDFW 309 Query: 304 DRGSFYSRVVD 314 D ++ Sbjct: 310 DSFGRIEEPLN 320 >UniRef50_B9KFD7 Quinone-reactive Ni/Fe-hydrogenase, small subunit n=2 Tax=Campylobacter RepID=B9KFD7_CAMLR Length = 544 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 112/293 (38%), Positives = 173/293 (59%), Gaps = 4/293 (1%) Query: 22 LKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVI 81 L+ + LGL P + ++W+H ECT C+ES +R++ P D+I Sbjct: 31 LEAVNSIIKILGLPNDFGPLAHRYFQLHTPPSLIWLHLSECTGCSESLLRTSLPDFLDLI 90 Query: 82 LSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISS-GRPF 140 ISL+Y +T M+A+G QAE E+++ + + ++LAVEG + I + G Sbjct: 91 FDFISLEYHETFMSASGHQAESHLEEVLEKKD--FLLAVEGGVCAIDPFYLTIGAHGENG 148 Query: 141 IEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDV 200 E L++ A A I A GTC+S+G +QAA PNPT++ I KV+ +K +I +PGCPP Sbjct: 149 YEILQKCAKNAKTIFAMGTCSSFGGIQAAHPNPTKSIGISKVLEEK-VINIPGCPPSDAN 207 Query: 201 MSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYC 260 + A + + + F++ +D RPL YG+ +HD C R+A F+AG F QS+DD+ ++GYC Sbjct: 208 IIAALCFYILFEQDMALDDQNRPLALYGKCLHDLCERKAKFEAGNFAQSFDDEKIKEGYC 267 Query: 261 LYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYSRVV 313 L+K+GCKGP YN C ++N S+P+ +GHGC+ C+E FWD FY + + Sbjct: 268 LFKVGCKGPYAYNNCPKVKFNSKTSWPVAAGHGCIACSEENFWDDFGFYEKPM 320 >UniRef50_Q5HT18 Hydrogenase, (NiFe)/(NiFeSe) small subunit family n=14 Tax=Campylobacter RepID=Q5HT18_CAMJR Length = 497 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 111/290 (38%), Positives = 171/290 (58%), Gaps = 5/290 (1%) Query: 25 CSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSL 84 + A L LG + + P+ +VW+H ECT C+ES +R+ P +++ Sbjct: 36 VKILARHLSLGNEIPALAQRFFQIAPKTKLVWLHLCECTGCSESLLRADLPSFDELVFDF 95 Query: 85 ISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISS-GRPFIEK 143 SL+Y +TLMAA GT+AEE+ + +ILAVEG + I + G E Sbjct: 96 FSLEYHETLMAANGTKAEEL---LEYVLEEDFILAVEGGVAAIDTFFLTIGAQGESGYEI 152 Query: 144 LKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSA 203 L++ AA A AI A GTC+S+G +QAA PNP++ I +V++ K ++ +PGCPP + A Sbjct: 153 LEKLAAKAKAIFAVGTCSSYGGIQAAYPNPSKTCGISEVLSQK-VVNIPGCPPSDINIIA 211 Query: 204 IITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYK 263 +++ F LP++D RP+ YG+ +HD C R+A F++G F + +DD+AA+ G CL+K Sbjct: 212 TLSFFALFGVLPELDEQNRPVWAYGKCLHDICERKAKFESGIFAEHFDDEAAKNGACLFK 271 Query: 264 MGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYSRVV 313 +GCKGP TYN C ++N S+P+ +GHGC+ C+E FWD Y + + Sbjct: 272 IGCKGPYTYNNCPKVKFNAKTSWPVAAGHGCIACSEKNFWDEFGNYEKPM 321 >UniRef50_P13063 Periplasmic [NiFeSe] hydrogenase small subunit n=10 Tax=Deltaproteobacteria RepID=PHSS_DESBA Length = 315 Score = 370 bits (950), Expect = e-101, Method: Composition-based stats. Identities = 102/318 (32%), Positives = 166/318 (52%), Gaps = 27/318 (8%) Query: 14 QGVTRRSFLKYCSLAATSLGLGAGMAPKIAWAL-ENKPRIPVVWIHGLECTCCTESFIRS 72 ++RR F+K CS LG+ P I A+ E + PV+W+ G CT C+ S + + Sbjct: 1 MSLSRREFVKLCSAGVAGLGISQIYHPGIVHAMTEGAKKAPVIWVQGQGCTGCSVSLLNA 60 Query: 73 AHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMF 132 HP K+++L +ISL++ T+MA+ G A +I ++NG + L VEG P ++G + Sbjct: 61 VHPRIKEILLDVISLEFHPTVMASEGEMALAHMYEIAEKFNGNFFLLVEGAIPTAKEGRY 120 Query: 133 CISS----------GRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKV 182 CI +E ++ A + A +A GTC+++G + AA N T + + Sbjct: 121 CIVGETLDAKGHHHEVTMMELIRDLAPKSLATVAVGTCSAYGGIPAAEGNVTGSKSVRDF 180 Query: 183 ITDKPI----IKVPGCPPIPDVMSAIIT----YMV--TFDRLPDVDRMGRPLMFYGQRIH 232 D+ I + VPGCPP PD M + +++ T LP++D GRPL+F+G IH Sbjct: 181 FADEKIEKLLVNVPGCPPHPDWMVGTLVAAWSHVLNPTEHPLPELDDDGRPLLFFGDNIH 240 Query: 233 DKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGH 292 + C +D EF +++ C ++GCKGP+TY C+ RWN+G+++ ++ Sbjct: 241 ENCPYLDKYDNSEFAETFTKPG-----CKAELGCKGPSTYADCAKRRWNNGINWCVE-NA 294 Query: 293 GCLGCAENGFWDRGSFYS 310 C+GC E F D S + Sbjct: 295 VCIGCVEPDFPDGKSPFY 312 >UniRef50_C7MNR7 Hydrogenase (NiFe) small subunit HydA n=4 Tax=Coriobacteriaceae RepID=C7MNR7_CRYCD Length = 439 Score = 369 bits (948), Expect = e-101, Method: Composition-based stats. Identities = 126/384 (32%), Positives = 185/384 (48%), Gaps = 22/384 (5%) Query: 7 FYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENK-------PRIPVVWIHG 59 F + +GV+RRSFLK C + G P++A ALE PV+WI G Sbjct: 10 FEALLEARGVSRRSFLKLCGAVVAAAGASQLTIPQVADALEKSVIGAKEGKLYPVIWIEG 69 Query: 60 LECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILA 119 CT CTE+F + P ++L +ISL+Y +TL AAAG EE E I G YIL Sbjct: 70 ASCTGCTEAFAQVETPDPATIVLEMISLNYSETLSAAAGYSMEEAKEQTIEA--GNYILI 127 Query: 120 VEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPI 179 EG G +G+P E L AA A+A++A G+CA G A PN A + Sbjct: 128 YEGAVLEKWGGEALRVAGKPGTEHLLEAAPSANAVVALGSCAVNGGWMGANPNSAGAVGV 187 Query: 180 DKVIT----DKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKC 235 +K + + P++ +PGCP P+ + A++ +V ++LP +D +P + + + IHD C Sbjct: 188 EKFLKESGINVPVVNIPGCPANPEWLVAVLVDVVMMNKLPALDYENKPALIFDETIHDNC 247 Query: 236 YRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCL 295 RR HF+ GEFV + + K YCLY MGC+GP T C R+N+ S+ +++G C+ Sbjct: 248 ERRGHFENGEFVYQFGSEEEAKNYCLYAMGCRGPQTKANCGIVRYNNRRSWCVEAGAPCI 307 Query: 296 GCAENGFWDRG--------SFYSRVVDIPQMGTHSTADTVGLTALGVVAAAVGVHAVASA 347 GC E D G F R D+ + V L +VAA + VH Sbjct: 308 GCCEAAPMDPGHNWVEVNTPFMKRHRDLRIGDWTFQTEAVCLGLTAIVAAGIAVHGFGIK 367 Query: 348 VDQRRRHN-QQPTETEHQPGNEDK 370 R + + + + D+ Sbjct: 368 ASGRMKGKFRFEEKRAWDAKHPDR 391 >UniRef50_C3XE47 Quinone-reactive Ni/Fe hydrogenase n=1 Tax=Helicobacter bilis ATCC 43879 RepID=C3XE47_9HELI Length = 593 Score = 365 bits (938), Expect = 1e-99, Method: Composition-based stats. Identities = 102/284 (35%), Positives = 158/284 (55%), Gaps = 3/284 (1%) Query: 30 TSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDY 89 + + + M LE + VVW+H ECT C+ES +R+ P + ++ + + Y Sbjct: 43 SLISVPKTMLDTCVEILEYMGDLKVVWLHLQECTGCSESLLRTETPSFEVLLFDIFKIVY 102 Query: 90 DDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAA 149 D +M ++G A E + KY+L VEG+ P+G + R +++ Sbjct: 103 HDLVMVSSGHGAVAALEHA--NSHEKYVLLVEGSIPMGFAKDYITLGDRNGYDEISHLIH 160 Query: 150 GASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMV 209 A A+ A GTC+S+G +Q+A PNPT + ++ ++ II VPGCPP + A + Y Sbjct: 161 NAEAVFAIGTCSSFGGIQSAYPNPTNGHALSEIF-EREIINVPGCPPSDKNIVATLLYYY 219 Query: 210 TFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGP 269 F P +D + RPL Y + +HD C R++ F AG+FV+S+DD ++GYCLYK+GCKGP Sbjct: 220 LFAESPSLDTLKRPLWAYSKSVHDLCERKSSFMAGDFVESFDDSNMKEGYCLYKVGCKGP 279 Query: 270 TTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYSRVV 313 TYN C ++N S+P+Q GHGC+GC+E FWD + + Sbjct: 280 YTYNNCPKVKFNAKTSWPVQGGHGCIGCSEPNFWDNFGNIEKPL 323 >UniRef50_A5D1L0 Ni,Fe-hydrogenase I small subunit n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D1L0_PELTS Length = 332 Score = 360 bits (925), Expect = 4e-98, Method: Composition-based stats. Identities = 104/302 (34%), Positives = 160/302 (52%), Gaps = 12/302 (3%) Query: 14 QGVTRRSFLKYCSLAATSLGLGAGMAPKIAW--ALENKPRIPVVWIHGLECTCCTESFIR 71 G+TRR F+K C A L + P++ AL + + PV+W+ G CT C+ S + Sbjct: 1 MGLTRREFIKLCMTTAAGASLFTVIGPELQESLALAAEGKPPVIWLQGASCTGCSISLLN 60 Query: 72 SAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGM 131 S P + VIL +ISL Y + AA+G E+ ++++ + ++IL VEG PL G Sbjct: 61 SVDPAIEKVILDVISLRYHPNISAASGHFVAEIMDEMLLSHKDQFILVVEGAIPLKNDGK 120 Query: 132 FCISSGR-----PFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDK 186 +C + + ++ ++ A A+IA G CAS+G + PNPT + KV+T K Sbjct: 121 YCTIAEKNGREITMLKAVQVLGNAAKAVIAAGQCASYGGIPGGAPNPTGVVGVKKVVTKK 180 Query: 187 PIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEF 246 P+I + CP PD + Y++ + +P +DR GRP MFY + IH+ C RR +FD+G F Sbjct: 181 PVINISLCPMHPDHFLGTVVYILKYGDIPPLDRYGRPAMFYPKPIHESCLRRPYFDSGRF 240 Query: 247 VQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRG 306 D+ CL +GCKG Y C WN+ V++ I++G C+ C+E F D Sbjct: 241 ASFIGDEG-----CLALLGCKGFVGYADCPVRGWNNNVNWCIKAGAPCMACSEPTFPDAA 295 Query: 307 SF 308 S Sbjct: 296 SP 297 >UniRef50_D2RD73 Hydrogenase (NiFe) small subunit HydA n=3 Tax=Archaeoglobaceae RepID=D2RD73_ARCPR Length = 352 Score = 358 bits (919), Expect = 2e-97, Method: Composition-based stats. Identities = 115/364 (31%), Positives = 186/364 (51%), Gaps = 32/364 (8%) Query: 14 QGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFIRSA 73 ++RR+FLK S L A + + K + W++G CT CT SF +SA Sbjct: 1 MKLSRRNFLKLVGAMGASTFLTTCKADLVKALEDVKDYWHICWLNGAACTGCTISFAQSA 60 Query: 74 HPLAKDVILSL--------ISL-DYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNP 124 P ++ + I+L DY +T+ A+GT AEE+ E K IL VEG Sbjct: 61 DPDLVQILTEILVGNSGLPIALPDYMETIHVASGTLAEELKERWRQSKRAK-ILIVEGAV 119 Query: 125 PLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAAR-----PNPTQATPI 179 + FC G+ F E LK AA A IIA G CA++G + A+ PNPT A + Sbjct: 120 ---QDEGFCTIHGKDFREHLKEAAEVADYIIAVGQCATYGGIPGAKPWDGEPNPTGAKGV 176 Query: 180 DKVI----TDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIH-DK 234 + +K +I +P CP PD + + ++ +P++D+ GRP +F+G+ +H + Sbjct: 177 QDFLYEVGINKTVINIPCCPAHPDHIIVTLASLML-GVVPELDKYGRPKVFFGKNMHNEL 235 Query: 235 CYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGC 294 C R ++D G F+ ++ C +KMGCKGP C+ +WN+G S+ +++ C Sbjct: 236 CPYRPYYDRGIFITKPGEEG-----CRFKMGCKGPICNTDCAIRKWNNGTSYCVETN-IC 289 Query: 295 LGCAENGFWDRGS-FYSRVVDIPQMGTHSTADTVGLTALGVVAAAVGVHAVASAVDQRRR 353 +GCAE G+ D+ S FY+ V ++P++ A+T+G LG +G+HAV ++ + Sbjct: 290 IGCAEPGWPDKFSPFYAEVPELPRV-LGVGAETIGAGLLGATLLGIGIHAVRHLGAKKHK 348 Query: 354 HNQQ 357 ++ Sbjct: 349 KEEE 352 >UniRef50_Q6ARY6 Related to periplasmic [NiFeSe] hydrogenase, small subunit [Precursor] n=1 Tax=Desulfotalea psychrophila RepID=Q6ARY6_DESPS Length = 300 Score = 358 bits (918), Expect = 3e-97, Method: Composition-based stats. Identities = 105/307 (34%), Positives = 156/307 (50%), Gaps = 17/307 (5%) Query: 13 RQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALE--NKPRIPVVWIHGLECTCCTESFI 70 +TRR FL+ + + LGLG+ P++A ALE R V+W+ C+ C+ S + Sbjct: 1 MTTLTRRQFLELSAKMSVVLGLGSSAIPQVAEALEALTTGRSKVLWLQAQSCSGCSISML 60 Query: 71 RSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQG 130 S P +++ ISL + TL AA G + + G YIL VEG+ P G Sbjct: 61 DSESPGPAELLTQYISLLFHHTLSAATGESCMHIVRKSVQ--QGGYILVVEGSIPAGMPE 118 Query: 131 MFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVI----TDK 186 C+ G P E +K+AA A +IA GTCA++G + AA NPT A P+ + Sbjct: 119 -ACMMGGIPVGELIKQAAERADYVIALGTCAAFGGIPAAEGNPTGAVPLGPFLQANKIKT 177 Query: 187 PIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEF 246 PII +PGCP PD + + ++ F LP D RP MF+ + HDKC R + ++ F Sbjct: 178 PIINIPGCPSHPDWLVGTLVHLCKFG-LPPCDEQRRPKMFFASKNHDKCPRFSDYEQENF 236 Query: 247 VQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRG 306 + + D CL+K+GC G +TY C+ N G + I++G C+GC+ F + Sbjct: 237 ARKFSDPG-----CLFKLGCLGVSTYADCTIRDRNGGTNACIKAGAPCIGCSSPQFAQKK 291 Query: 307 S--FYSR 311 S FY + Sbjct: 292 SLPFYRK 298 >UniRef50_A1HLY8 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HLY8_9FIRM Length = 325 Score = 353 bits (907), Expect = 4e-96, Method: Composition-based stats. Identities = 107/318 (33%), Positives = 170/318 (53%), Gaps = 14/318 (4%) Query: 13 RQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALEN--KPRIPVVWIHGLECTCCTESFI 70 + +TRR FL+ C +LGL + +I A PVVW+ G C+ C+ S + Sbjct: 1 MRNLTRRDFLRLCGATGAALGLSNVLHAEIVEAFSGPAAGHPPVVWLQGGSCSGCSVSLL 60 Query: 71 RSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQG 130 S P V+ +ISL + TLMAAAG A V +++ +Y G+Y L VEG P+ Sbjct: 61 NSVAPDIGKVLTDIISLKFHQTLMAAAGEPAMAVLDEVRARYAGQYYLVVEGAVPVAAGR 120 Query: 131 MFCISSGR-----PFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITD 185 PF +++++ AA A A++A GTCA++G + AA NPT + + V+ Sbjct: 121 HTATLGEHNGQPVPFADRVRQMAAKAKAVMAVGTCAAYGGIPAAGVNPTASKAVSAVVRG 180 Query: 186 KPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGE 245 P++ VPGCP PD + + +++ + +P++D++ RPLMF+G+ IHD C RR FD G Sbjct: 181 TPLVNVPGCPIHPDWVLGTLLHLIRYG-MPELDKLQRPLMFFGKSIHDICERRPDFDQGR 239 Query: 246 FVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDR 305 F + + CLYK+GCKGP + C+ ++N+G ++ + + CL C F D Sbjct: 240 FAKKLSEPG-----CLYKLGCKGPMAFGDCAERKFNNGANWCVGANSPCLSCTGPEFPDA 294 Query: 306 G-SFYSRVVDIPQMGTHS 322 F+ ++ + GT S Sbjct: 295 SAPFFVKIKEYGPAGTPS 312 >UniRef50_C8S958 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Ferroglobus placidus DSM 10642 RepID=C8S958_FERPL Length = 355 Score = 342 bits (877), Expect = 1e-92, Method: Composition-based stats. Identities = 103/363 (28%), Positives = 175/363 (48%), Gaps = 27/363 (7%) Query: 16 VTRRSFLKYCSLAATSLGLGAGMAPKIAWALE--NKPRIPVVWIHGLECTCCTESFIRSA 73 + RR F+K + + L I A E + +VW+ G + CT S +++A Sbjct: 3 LGRRGFVKALTTLGAAAFLSK-YKSFIVEAFEEAKSNDVKLVWLQGQSDSACTVSLLQAA 61 Query: 74 HPLAKDVILSL-ISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMF 132 P D + L + + + T+M G +A +V E+I +L +EG+ P G+ Sbjct: 62 DPDLYDAVEELKVGIYFHPTVMPDFGDKAIKVLEEIE-----PDVLVLEGSIPTGDMEYA 116 Query: 133 CISS---GRPF--IEKLKRAAAGAS-AIIAWGTCASWGCVQAARP----NPTQATPIDKV 182 C G+P +E L A++ +G+CA++G + +A+ +PT A + + Sbjct: 117 CTFGERNGKPVTLVEWLNELIPKTKVAVVGFGSCATYGGIPSAKDFEGKSPTNAVGLYQF 176 Query: 183 ITDK----PIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRR 238 + DK P++ +PGCP PD + + ++ ++ D+D RP F+ Q IHD C RR Sbjct: 177 LKDKKPAVPVVLLPGCPGHPDWLLVTLAAVLLGVKV-DLDDYWRPKWFFSQLIHDNCARR 235 Query: 239 AHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCA 298 +D G F +S+++ + CL+K+GC+GP TY ACS T+WN GV+ + +G C+GC Sbjct: 236 GFYDEGWFAKSFEESDLKYETCLFKLGCRGPMTYAACSETKWNGGVNVCMNAGAPCIGCM 295 Query: 299 ENGFWDRGSFYSRVVDIPQMGTHSTADTVGLTALGVVAAAVGVHAVASAVDQRRRHNQQP 358 GF D S + + ++ TV T G V G + V A+ + + + Sbjct: 296 HPGFPDETSPFFKEQSRLEIDL---TKTVFSTLTGAVLVGAGAYIVTHAIKEGKEDKKGG 352 Query: 359 TET 361 E Sbjct: 353 EEK 355 >UniRef50_B1I618 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Clostridiales RepID=B1I618_DESAP Length = 375 Score = 330 bits (847), Expect = 4e-89, Method: Composition-based stats. Identities = 102/317 (32%), Positives = 162/317 (51%), Gaps = 15/317 (4%) Query: 47 ENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFE 106 E + P+VW+ C S + HP + ++ L+ + + +TLM A G QA EV E Sbjct: 49 ERLEKHPLVWLETNTCHGNILSLMNGQHPDFEAIMRELLDVYWTNTLMGAKGHQAIEVLE 108 Query: 107 DIITQYNGKYILAVEGNPPLGEQGMFCISS----GRPFIEK--LKRAAAGASAIIAWGTC 160 ++ + G YIL VEG P G + G P+ + AA A ++A G+C Sbjct: 109 KVMVERPGDYILVVEGTVPTAAGGRYAHIGLRGNGEPWTAWDAVVELAAAAKHVVAVGSC 168 Query: 161 ASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRM 220 A+WG A PNPT + P+ V+ D+ +I VPGCP PD + + +++ + +P++D M Sbjct: 169 AAWGLPFGAHPNPTGSKPVSAVV-DRTVINVPGCPAHPDWILGTLAHLIWYG-VPELDAM 226 Query: 221 GRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRW 280 RP++FYG+ IH+ C RR +F++G F + +CLYK+GCKGP TY C S +W Sbjct: 227 NRPVVFYGETIHNLCQRRHYFESGIFAGEIGEP-----WCLYKIGCKGPVTYADCPSRQW 281 Query: 281 ND-GVSFPIQSGHGCLGCAENGFWDRG-SFYSRVVDIPQMGTHSTADTVGLTALGVVAAA 338 +++P+ + C+GC F + F+ + D+ G TAD VG A Sbjct: 282 CGEHMNWPVGANTPCIGCTSPEFLEHTAPFFEHLPDVRLPGVRVTADRVGAATGLAAALG 341 Query: 339 VGVHAVASAVDQRRRHN 355 +G+H + R + Sbjct: 342 IGLHLTGKLLTGRLQKE 358 >UniRef50_A5I2W4 Hydrogenase small subunit n=13 Tax=Firmicutes RepID=A5I2W4_CLOBH Length = 290 Score = 328 bits (842), Expect = 1e-88, Method: Composition-based stats. Identities = 88/282 (31%), Positives = 153/282 (54%), Gaps = 20/282 (7%) Query: 41 KIAWALE-----NKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMA 95 A+E ++ +W+ C+ S + + +P ++ ++++L ++++LM Sbjct: 19 LCKEAMELINHRKIKKVNAIWLEVTGCSGNIISLLNAENPGLIYILRNIVNLTFNNSLMG 78 Query: 96 AAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISS---GRPF--IEKLKRAAAG 150 A G A +E + + ++IL V+G E G + I + GRP +E +K A Sbjct: 79 AEGEFA---YEQFLNTLDTEFILLVDGAVSTKENGYYNIIANYRGRPVTALEAIKMAGEK 135 Query: 151 ASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVT 210 A ++ GTC+S+G + AA+PNP+ + +D VI +K +IK+PGCP PD + + ++VT Sbjct: 136 AKYVVTVGTCSSYGGISAAKPNPSGSKSVDAVI-NKEVIKLPGCPCHPDWVVGTLAHLVT 194 Query: 211 FDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPT 270 + + P++D GRP++FYG IHD C RR FD F + + ++ C++K+GC+GP Sbjct: 195 YGK-PELDNKGRPILFYGITIHDSCTRRGFFDKRIFAKKFGEEG-----CMFKLGCRGPV 248 Query: 271 TYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYSRV 312 T C +WN V++PI C+GCA+ F D + R Sbjct: 249 TKTDCPRRKWNGYVNWPIGDNTNCIGCAQERFPDGMEPFVRY 290 >UniRef50_Q1NM22 Ni-Fe hydrogenase, small subunit n=3 Tax=Deltaproteobacteria RepID=Q1NM22_9DELT Length = 343 Score = 325 bits (833), Expect = 2e-87, Method: Composition-based stats. Identities = 95/324 (29%), Positives = 149/324 (45%), Gaps = 16/324 (4%) Query: 12 RRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENK----PRIPVVWIHGLECTCCTE 67 R Q +RR FLK + G ++ A E PR +VW+ G C+ C+ Sbjct: 12 RMQICSRREFLKKIYRVVVAAGAAPLLSFDELLAAEGGENPFPRPNLVWLQGASCSGCSL 71 Query: 68 SFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLG 127 S + + D++ L Y TL A G Q ++ + T Y+L +EG P G Sbjct: 72 SLLNTEEITVLDLLTRFSRLLYHPTLAQATGNQVTDLLTKLTTGVE-PYLLVLEGGIPAG 130 Query: 128 EQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDK- 186 C+ + RPF E + R A GA A +A GTCA++G V A T +D+ + + Sbjct: 131 MP-HACLLAHRPFEEWVSRLAQGADACVAVGTCAAFGGVAAMPGTLTGVVSLDRHLATRD 189 Query: 187 ---PIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDA 243 P++ +P CP P+ + + + RLP++D GRP F+ +H +C R A F Sbjct: 190 IAVPLVNLPSCPMKPEHLVYTLLHYGRHRRLPELDGRGRPRRFFANTVHQRCPRYAAFQE 249 Query: 244 GEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFW 303 +F + +D CL ++GC+GP + N C +N +++ +++GH C GCA F Sbjct: 250 LDFARHIGEDG-----CLLELGCQGPVSNNDCPDLGYNGNLNYCLKAGHPCTGCAGELFP 304 Query: 304 DRGSFYSRVVDIPQMGTHSTADTV 327 R Y D G DT+ Sbjct: 305 -RPVLYHLYDDPRLKGGLLQGDTI 327 >UniRef50_B8HZS9 Hydrogenase (NiFe) small subunit HydA n=3 Tax=Clostridium RepID=B8HZS9_CLOCE Length = 299 Score = 324 bits (831), Expect = 3e-87, Method: Composition-based stats. Identities = 91/295 (30%), Positives = 151/295 (51%), Gaps = 17/295 (5%) Query: 22 LKYCSLAATSLGLGAGMAPKIAWALENK--PRIPVVWIHGLECTCCTESFIRSAHPLAKD 79 K C A L + ++ + R +VW+ C+ S + A+P K Sbjct: 4 TKTCPEYAARLKTARELFDRVKDKISEGTLMRRNLVWLELTGCSGNIISLLDGANPDFKY 63 Query: 80 VILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISS--- 136 +I + + YD++L+AA G E+ E ++ +YILAVEG GM+ + Sbjct: 64 LISQMTNFLYDNSLVAAEG---EKAMEKLMGSIGDEYILAVEGAVATKNNGMYNVIGRWQ 120 Query: 137 GRPF--IEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGC 194 G+P + +K AS +IA G CAS G V AA+PNP+ + ++ ++ +IK+PGC Sbjct: 121 GKPVTALNAIKLLGEKASYVIALGACASHGGVSAAKPNPSDCVSVQSIL-NRKVIKLPGC 179 Query: 195 PPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDA 254 P PD + +++ + P++D RP++FY IHD+C RR+ FD G F + + Sbjct: 180 PCHPDWFMGTLAHILLYGE-PELDNRDRPVLFYSTLIHDRCPRRSFFDKGIFAKKLGEST 238 Query: 255 ARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGSFY 309 C++K+GC+GP T C +WN V++P++ C+GCA+ GF D+ + Sbjct: 239 -----CMFKLGCRGPVTRIDCPIRKWNQYVNWPVEDDTPCIGCAQFGFPDQMEPF 288 >UniRef50_B8D1R7 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Halothermothrix orenii H 168 RepID=B8D1R7_HALOH Length = 334 Score = 324 bits (830), Expect = 4e-87, Method: Composition-based stats. Identities = 91/292 (31%), Positives = 138/292 (47%), Gaps = 13/292 (4%) Query: 48 NKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFED 107 N ++PV+WI + SF+ + +P V +I L Y +T MAA G A ++ + Sbjct: 36 NGKKLPVIWIETNDSGDNNISFMNTTYPYLDQVFEDIIDLYYSNTFMAAQGEDAYQILKK 95 Query: 108 IITQYNGKYILAVEGNPPLGEQGMFCIS-----SGRPFIEKLKRAAAGASAIIAWGTCAS 162 + + ++ L VEG PL G + I+ +E ++ A +A GTCAS Sbjct: 96 VALREKREFTLVVEGAIPLKANGRYNITFITDEGPVTAVELVRWLGELAKYAVAVGTCAS 155 Query: 163 WGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGR 222 +G AA PN T + + V+ D+ II V GCP PD + ++ + LPD+DR+GR Sbjct: 156 FGGASAASPNITGSVALGDVL-DRQIINVSGCPINPDWFVGTLAHLQMYG-LPDLDRLGR 213 Query: 223 PLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWND 282 P +FY +H C RR++FD G F + D C++ GC GP T C W++ Sbjct: 214 PELFYQFTVHRHCQRRSYFDDGNFAEELGDIE-----CMFSQGCVGPRTGADCPYRLWDN 268 Query: 283 GVSFPIQSGHGCLGCAENGFWD-RGSFYSRVVDIPQMGTHSTADTVGLTALG 333 VS+PI+ C+GC F D F+ + Q T G G Sbjct: 269 HVSYPIKVNTPCIGCTNEDFPDGSSPFFVPLPLKRQEDEEVTPGRDGDKING 320 >UniRef50_Q1NRB7 Ni-Fe hydrogenase, small subunit:Twin-arginine translocation pathway signal n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NRB7_9DELT Length = 299 Score = 313 bits (802), Expect = 7e-84, Method: Composition-based stats. Identities = 93/301 (30%), Positives = 144/301 (47%), Gaps = 14/301 (4%) Query: 16 VTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFIRSAHP 75 + RR+FLK + A + G+ P A E ++++ GL CT C+ S +++A P Sbjct: 1 MDRRNFLKMAAALAAAFGVRGLPEPVAAALKEIDQVPKILYLQGLSCTGCSISLLQAASP 60 Query: 76 LAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCIS 135 ++I L + L + +G QA E+ I G+Y LA+EG P G C+ Sbjct: 61 TPLEMITDYSQLAFHTDLSSTSGAQAMELINAFIDGEAGEYFLAIEGAVP-GTMPRACVI 119 Query: 136 SGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKP----IIKV 191 +PF L+RAA S +A G+CA G + AA NPT A + + + +I + Sbjct: 120 DHQPFASYLERAARTMSGAVAVGSCACDGGIPAAEGNPTGAIGLREFYRQRELEPLLIDI 179 Query: 192 PGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWD 251 GCP PD + IT++V LP + G P F+ +R+H+ C R F F + Sbjct: 180 RGCPIHPDWLWHTITHLVKVG-LPSLVN-GAPQAFFQRRLHELCPRYYDFQEEIFAEKMG 237 Query: 252 DDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRG--SFY 309 + CL+K+GC GP T+ C + WN G ++ I + C+GCA F + FY Sbjct: 238 ERG-----CLFKLGCLGPITFADCPTRWWNGGRTWCIDTNAPCIGCASPDFARKKDLPFY 292 Query: 310 S 310 Sbjct: 293 R 293 >UniRef50_B9L9V0 Hydrogenase n=1 Tax=Nautilia profundicola AmH RepID=B9L9V0_NAUPA Length = 306 Score = 312 bits (800), Expect = 1e-83, Method: Composition-based stats. Identities = 77/317 (24%), Positives = 139/317 (43%), Gaps = 16/317 (5%) Query: 16 VTRRSFLKYCSLAATSLGLGAGMAPKIAWAL-ENKPRIPVVWIHGLECTCCTESFIRSAH 74 + RR FLK ++G + + A E R ++W+ L C C+ +F+ + Sbjct: 1 MDRREFLKNVHNLLVAIGGSSFFTMEELEAFDETDDRPDIIWLQALSCDGCSVNFLNAEI 60 Query: 75 PLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCI 134 P +++ ++ + T+MA+ G +A ++ + + IL VEG P C+ Sbjct: 61 P-VTEILNRFANIVFHPTIMASDGKEAMDIL---MNYKSDNMILVVEGAIPTAMP-HACM 115 Query: 135 SSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVI----TDKPIIK 190 + + + A A AI+A GTCA++ + + T+A + + + P++ Sbjct: 116 MGEMFVNDIILKKAKEAKAIVAAGTCATFAGICDMKNMYTKAGSVKYFLETNNINTPVVN 175 Query: 191 VPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSW 250 +P CP P + + Y + LP +D RP+ F+ IH++C + F + Sbjct: 176 LPTCPMKPKHLLYTLFYYIKHKSLPPLDMSHRPIKFFSNTIHERCIYYNDYQQNIFAKKI 235 Query: 251 DDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYS 310 D CL+K+GC+GP T N C + I+SGH C+GC F R + Sbjct: 236 GDRG-----CLFKLGCQGPVTKNDCVKSTGEYDKYNCIKSGHPCVGCGSENFP-RTIMFK 289 Query: 311 RVVDIPQMGTHSTADTV 327 R D ++ + T + Sbjct: 290 RSDDKREIEKYKTFKRI 306 >UniRef50_Q46BG0 Methanophenazine-reducing hydrogenase, small subunit n=9 Tax=Methanosarcina RepID=Q46BG0_METBF Length = 411 Score = 309 bits (792), Expect = 9e-83, Method: Composition-based stats. Identities = 100/360 (27%), Positives = 163/360 (45%), Gaps = 46/360 (12%) Query: 8 YQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTE 67 ++ + + RR+F+K + SL L +A ALE VVW+HG+ + CT Sbjct: 15 FKNLDFMKMDRRTFIKAVGVLGASLFL-QTYKNDLAKALEFSE-TKVVWLHGVMDSGCTI 72 Query: 68 SFIRSAHPLAKDVILSL-ISLDYDDTLMAAAGT------------QAEEVFEDIITQYNG 114 S + P + + + L Y + LM G +E V +DI+ + G Sbjct: 73 SMLDGGSPDIIEFLQEYNLKLLYHEVLMMQQGIFVDGKLANTSDLNSEIVLDDILEKEKG 132 Query: 115 KYILAVEGNPPLGEQG--MFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPN 172 Y+L EG G +G + + GR + E +AA A AI+A G CA+ G V +A+ + Sbjct: 133 -YVLVSEGAISNGPEGSGKYLMLGGRTYKEIYAKAAKNALAIVAIGNCATNGGVNSAKSD 191 Query: 173 ------PTQ--------ATPIDKVI-TDKPIIKVPGCPPIPDVMSAIITYMVTFD-RLPD 216 P + I ++ +KP+I + GCP PD + I +V ++PD Sbjct: 192 IVELMDPRGVAFTMEDASKGILDLLGIEKPVINLTGCPTHPDWVFLTIGAVVLGKIKIPD 251 Query: 217 -----VDRMGRPLMFY--GQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGP 269 +D RP +F+ IHD C RR ++D GEF + CL+K+GCKGP Sbjct: 252 DLPYVLDHWKRPKVFFPPDHVIHDNCSRRGYYDRGEFELTVGGPK-----CLWKLGCKGP 306 Query: 270 TTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYSRVVDIPQMGTHSTADTVGL 329 T+ C++ WN +++ Q+G C+GC + GF D + + + + G+ Sbjct: 307 YTHADCATRNWNGHLNYCPQAGSPCIGCVQPGFPDSTRPFFVEFEKTGIVGTNITTIAGV 366 >UniRef50_C8R2V0 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R2V0_9DELT Length = 305 Score = 309 bits (791), Expect = 1e-82, Method: Composition-based stats. Identities = 82/268 (30%), Positives = 133/268 (49%), Gaps = 13/268 (4%) Query: 52 IPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQ 111 ++++ GL CT C+ S +++ P +I L + L A +G QA E+ I Sbjct: 40 PKLLYLQGLSCTGCSISLLQADSPSPLSMITDYSQLVFHTDLSATSGAQAMELINSFIDG 99 Query: 112 YNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARP 171 G Y+LA+EG P G CI +PF + L+RAA S +A G+CA G + AA Sbjct: 100 QAGDYVLAIEGAIPAGMPE-ACIIDHKPFADYLERAARTMSGAVAIGSCACDGGIPAAEG 158 Query: 172 NPTQATPIDKVITDK----PIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFY 227 NPT A + + ++ P+I + GCP PD + IT++V P++ G P +F+ Sbjct: 159 NPTGAVGLAEFYRNRNINQPVINIRGCPVHPDWVWHTITHLVLVGN-PNLVN-GSPRVFF 216 Query: 228 GQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFP 287 +R+H+ C R F F + D CL+++GC GP T+ C + WN G ++ Sbjct: 217 ERRLHELCPRYYDFQEEIFAEKLGDRG-----CLFRLGCLGPITFADCPTRWWNGGRTWC 271 Query: 288 IQSGHGCLGCAENGFW-DRGSFYSRVVD 314 + + C+GCA F + + R+ + Sbjct: 272 VDTNAPCIGCASPKFARQKDLPFYRLSE 299 >UniRef50_B2TM84 [Ni/Fe] hydrogenase, small subunit n=2 Tax=Clostridium botulinum RepID=B2TM84_CLOBB Length = 313 Score = 306 bits (784), Expect = 8e-82, Method: Composition-based stats. Identities = 93/309 (30%), Positives = 151/309 (48%), Gaps = 23/309 (7%) Query: 19 RSFLKYCSLAATSLGLGAGMAPKIAWALE------NKPRIPVVWIHGLECTCCTESFIRS 72 + ++K A G A ++ NK +I +W+ C S + S Sbjct: 13 KDYMKNVG-CARGEGKPFKFAKEMIDKATEEIKARNKEKINAIWLETSGCFGEVISLLNS 71 Query: 73 AHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNG--KYILAVEGNPPLGEQG 130 P V+ +L+++ + ++ G Q E+ +E I+ N +YIL V G P+ G Sbjct: 72 EMPDLPFVLKNLVNMTFFGSI---CGDQGEKAYERILDTLNSDKEYILLVCGAIPINADG 128 Query: 131 MFCISS---GR--PFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITD 185 ++ + + GR +E +K+AA A II+ GTCA +G AA+PN +QA + + + Sbjct: 129 LYTVLATYQGRKITAMELVKQAAQKAKYIISIGTCACYGGPTAAKPNVSQALSVKEYLMR 188 Query: 186 KPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGE 245 II +PGCP P + Y++ + + D+D GRP+ FYG+ IH+ C +R FD G Sbjct: 189 NDIINIPGCPANPVWTLGTVGYLINYGTI-DLDEEGRPVAFYGKTIHEICPKRKFFDKGI 247 Query: 246 FVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDR 305 F + + CLY++GCKGP T C +RWN ++PI C+GCA GF D Sbjct: 248 FAKKLGNPE-----CLYELGCKGPITKVYCPISRWNQSDNWPIGDRTPCIGCARKGFPDA 302 Query: 306 GSFYSRVVD 314 +++ Sbjct: 303 MEPFTKYEG 311 >UniRef50_A4YF94 NADH ubiquinone oxidoreductase, 20 kDa subunit n=8 Tax=cellular organisms RepID=A4YF94_METS5 Length = 322 Score = 304 bits (780), Expect = 3e-81, Method: Composition-based stats. Identities = 73/308 (23%), Positives = 138/308 (44%), Gaps = 26/308 (8%) Query: 53 PVVWIHGLECTCCTESFIRSAHPLAKDVIL-SLISLDYDDTLMAAAGTQAEEVFEDIITQ 111 ++W+ G C T S + ++ P + + + L + +L G +++ E II Sbjct: 3 NLLWLQGGACGGNTLSVLNASDPDILSFLYQNNVKLLWHPSLSQECGRDLKKILESIIEG 62 Query: 112 YNGKYILAVEGNPPLGE--QGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAA 169 IL EG+ G +G F + +G+P + ++ A A+ I+A G CAS+G + AA Sbjct: 63 KINLDILLFEGSIVRGPAGKGTFNMFAGKPMMWWVREIAPQANYIVAVGDCASFGGIPAA 122 Query: 170 RPNPTQATPID--------------KVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLP 215 PNPT++T + + + P+I + GCP P+ + +T ++ + Sbjct: 123 DPNPTESTGLQFHRKEMSGFLGKDFRCKSGLPVINLSGCPVHPEWLITTLTLILRGEMNQ 182 Query: 216 D-VDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNA 274 + +D RP +FY C R+ +F + S + ++G + +GC+G T ++ Sbjct: 183 EMLDEFNRPRIFYATTTQFGCPRQPYFT---YKISTKEFGHKEGCLFFDLGCRGSYTRSS 239 Query: 275 CSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYSRVVD---IPQMGTHSTADTVGLTA 331 C++ WN+ S + G C+GC E F +F+ + IP+ + +T Sbjct: 240 CNNILWNNQ-SSKTRVGTPCMGCTEFDFP-TFNFFKTEKNRSGIPRRLPLGVSKGAYVTF 297 Query: 332 LGVVAAAV 339 + A Sbjct: 298 AAIARGAA 305 >UniRef50_Q0RN51 Uptake hydrogenase small subunit (Hydrogenlyase) (Membrane-bound hydrogenase small subunit) n=23 Tax=Bacteria RepID=Q0RN51_FRAAA Length = 359 Score = 304 bits (778), Expect = 4e-81, Method: Composition-based stats. Identities = 83/350 (23%), Positives = 146/350 (41%), Gaps = 40/350 (11%) Query: 50 PRIPVVWI-HGLECTCCTESFIRSAHPLAKDVILSLIS----LDYDDTLMAAA--GTQAE 102 + ++WI G+ C T S ++ P +DVI +I + + +++ G + Sbjct: 18 DEVHILWISEGMSCDGDTVSVTAASQPAIEDVITGVIPGLPTVHLHNKVLSPTLGGEEFL 77 Query: 103 EVFEDIITQYNGKYILAVEGNPP---LGEQGMFCISS-----GRPFI--EKLKRAAAGAS 152 F ++L +EG+ P + +G + G+P + R A A Sbjct: 78 APFRAAARGELEPFVLVIEGSIPNENINGEGYWTSFGNDPDTGQPLTINWWIDRLAPRAW 137 Query: 153 AIIAWGTCASWGCVQAARPNPTQATPIDKVIT-------DKPIIKVPGCPPIPDVMSAII 205 A+IA GTCA++G + A NPT + + + + PI+ VPGCP PD + Sbjct: 138 AVIAIGTCAAYGGIHAMAGNPTGSMGLLDYLGRDFTSAGNLPIVNVPGCPVQPDDFMETL 197 Query: 206 TYMVTFD----RLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCL 261 T+++ P +D RP +G+ +H+ C R +++ G+F + ++ C Sbjct: 198 TWLLYHAAGTAPPPPLDDQHRPQWIFGRTVHEGCDRAGYYEQGDFAKDYNSPK-----CQ 252 Query: 262 YKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYSRVVDIPQMGTH 321 K+GC GP W GV G C+ C GF D+ + +D+P + Sbjct: 253 VKIGCWGPVVNCNVPKRGWMGGVGGCPNVGGICIACTMPGFPDKFMPF---MDMPPGASL 309 Query: 322 STADTVGLTALG-VVAAAVGVHAVASAVDQRRRHNQQPTETEHQPGNEDK 370 S+ + + G V+ G+ + R RHN+ T + P K Sbjct: 310 SS---LAVKPYGSVIRRLRGITNATVNREPRWRHNRDLLTTGYDPSYRPK 356 >UniRef50_C1SPM4 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SPM4_9BACT Length = 310 Score = 303 bits (775), Expect = 9e-81, Method: Composition-based stats. Identities = 85/304 (27%), Positives = 152/304 (50%), Gaps = 14/304 (4%) Query: 16 VTRRSFLKYCSLAATSLGLGAGMAPKIAWA---LENKPRIPVVWIHGLECTCCTESFIRS 72 ++RR FLK C + + +IA +++ R +V+I G CT C+ S + Sbjct: 2 LSRRDFLKRCRDISAVVFGAEVFGAQIAEGFMKIQSADRPQLVFIQGQSCTGCSTSLMYG 61 Query: 73 AHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMF 132 D I+ L+ + L + G + +++ + G +IL +EG+ P E Sbjct: 62 NETDFIDFIMKLVRVQVHPNLSLSQGNGYLNMLDEVTSA--GGHILVLEGSIP-AEMKKA 118 Query: 133 CISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITD----KPI 188 C+ P + LK+ ASA++A G+C+ +G + A+ N T A I + + + KP+ Sbjct: 119 CMLGEEPLYDALKKHLEKASAVVASGSCSCFGGIPASGANETGAIDIVQYMRETGISKPL 178 Query: 189 IKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQ 248 IK+PGCP PD + + Y++ ++PD++ G P+ ++G IH+ C R +F +++ Sbjct: 179 IKIPGCPVHPDRLMGTVAYILGAGKMPDMED-GIPVQYFGDLIHNNCTRFQYFSQDIYLE 237 Query: 249 SWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGSF 308 + D K CL K GC+G T + C+ RWN GV+ ++S C+GC + + + Sbjct: 238 DYAKD---KHSCLLKKGCRGTITKSDCALRRWNGGVNVCVESNAPCVGCINEKWPFKENI 294 Query: 309 YSRV 312 Y + Sbjct: 295 YLKF 298 >UniRef50_Q0W5V7 F420-nonreducing hydrogenase (Membrane-bound), small subunit n=2 Tax=Euryarchaeota RepID=Q0W5V7_UNCMA Length = 388 Score = 301 bits (770), Expect = 4e-80, Method: Composition-based stats. Identities = 105/374 (28%), Positives = 158/374 (42%), Gaps = 34/374 (9%) Query: 15 GVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFIRSAH 74 G+ RR+FL + + A +P +A A+ + + ++W+ G C CT SF+ + Sbjct: 13 GLGRRAFLALAATTGAAAF-LAMHSPGVAAAIADSRK-KLLWLRGSGCGGCTASFLNGGY 70 Query: 75 PLAKDVILSL-ISLDYDDTLMAAAG----------TQAEEVFEDIITQYNGKYILAVEGN 123 P + S+ + Y D LMA G + + + +G Y+L VEG Sbjct: 71 PDVLAALDSVGAVITYHDGLMAQQGITLDGVSKTPDTYNALKKLDLLIDSGDYVLVVEGA 130 Query: 124 PPLGEQGM--FCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPI-- 179 P G G +C + GR E AA A IIA GTCA++G + +A + T A + Sbjct: 131 IPNGPDGTGKYCTTGGRAVKEIFSEAAEKAETIIALGTCAAFGGISSAGRSVTDARGVAY 190 Query: 180 ----------DKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQ 229 ++ K +I VPGCP PD + +++ + VD RP F+ + Sbjct: 191 TGASRFNGILSELNMRKKVINVPGCPAHPDWFLLTLADVLSGAEVT-VDDYRRPAAFFSK 249 Query: 230 R-IHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPI 288 IHD C RR +D G+ + + CLY GCKG TY C RWN GVS Sbjct: 250 SAIHDTCTRRGSYDQGQRDTQFAGEG-----CLYGAGCKGMITYADCPVRRWNGGVSTCT 304 Query: 289 QSGHGCLGCAENGFWDRGSFYSRVVDIPQMGTHSTADTVGLTALGVVAAAVGVHAVASAV 348 +G C+GC E F + V+ + + + D LG GVHAV Sbjct: 305 LAGGPCVGCVEAEFPGAFMPFFNRVEDRSLISGTNVDLGAKVILGAAILGAGVHAVKRLA 364 Query: 349 DQRRRHNQQPTETE 362 + E + Sbjct: 365 IGDNDNEGDGDEEK 378 >UniRef50_A1RXR6 Hydrogenase (NiFe) small subunit HydA n=3 Tax=Thermoprotei RepID=A1RXR6_THEPD Length = 423 Score = 300 bits (768), Expect = 6e-80, Method: Composition-based stats. Identities = 95/426 (22%), Positives = 169/426 (39%), Gaps = 79/426 (18%) Query: 10 AMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTESF 69 +++ ++RR FLK +AA L ++A A I +VW +C T + Sbjct: 2 SLKGISISRRDFLKMGGVAALLASLNWDELVRLAVAQAQSGSINIVWFEAQDCAGNTTAL 61 Query: 70 IRSAHPLAKDVILSL--------ISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVE 121 I++ P DV+ + L + +T+M G A + ++L +E Sbjct: 62 IQATEPDLIDVLGGSFHLVGPGNVKLAFHETVMPEWGEGALSIARAAAQGKLDPFVLVLE 121 Query: 122 GNPPL-----GEQGM--FCISSGR-----PFIEKLKRAAAGASAIIAWGTCASWGCVQAA 169 G+ P G G +C +E ++R A A++ G CAS+G + A Sbjct: 122 GSFPQDEKAGGPPGSDSYCYIGDENGKVISCVEWMRRLLPRAVAVVTMGNCASYGGLVAN 181 Query: 170 R--------------PNPTQATPI---------------------DKVITD--------- 185 + +PT A + IT Sbjct: 182 KVLERVPGLPSSSWSDSPTGAVGFFDDPIRGIKGLVSTLPEAEPFRRFITGQCTLKPGEI 241 Query: 186 ----KPIIKVPGCPPIPD----VMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYR 237 +P + VPGCP + ++A++ + LP++D+ RP +G +H++C R Sbjct: 242 RPDCRPAMAVPGCPANGNGQLRALAALVLWAKGLLPLPELDKYWRPKFIFGNTVHEQCPR 301 Query: 238 RAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGC 297 + AG+F +++ R CLY +GCKGP + + W +GV P ++G C+GC Sbjct: 302 AGSYAAGDFRAYPGENSYR---CLYAVGCKGPISNCPWNKLGWVNGVGGPTRTGGVCIGC 358 Query: 298 AENGFWDRGSFYSRVVDIPQMGTHSTADTVGLTALGVVAAAVGVHAVASAVDQRRRHNQQ 357 GF D + + + P++ + G+ A+ + A VG+ AS ++R+ Sbjct: 359 TMPGFTDAYEPFYKPLQAPRVPSGLE----GVAAIAALLAGVGLAYGASKSIEKRKEEVA 414 Query: 358 PTETEH 363 E Sbjct: 415 KEIKEV 420 >UniRef50_D2LGK5 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LGK5_RHOVA Length = 358 Score = 296 bits (758), Expect = 8e-79, Method: Composition-based stats. Identities = 82/349 (23%), Positives = 139/349 (39%), Gaps = 33/349 (9%) Query: 45 ALENKPRIPVVWIHGLECTCCTESFIRSAHPL-AKDVILSLISLDYDDTLMAAAGTQAEE 103 A R+ ++W+ C C+ S + + P + L I + +L A+G Sbjct: 17 ATGRPARLSLLWLQSGGCGGCSMSLLNADSPDLFAALDLGRIDVLAHPSLSEASGEDYHA 76 Query: 104 VFEDIITQYNGKYILAVEGNPPLGEQG----MFCISSGRPFIEKLKRAAAGASAIIAWGT 159 + I++ IL VEG G G +G+P ++ + AA A +IA G+ Sbjct: 77 LIARILSGQQPLDILCVEGAILRGPNGTGRFHLQPGTGKPVMQLVAELAACAGHVIAIGS 136 Query: 160 CASWGCVQAARPNPTQATPID--------------KVITDKPIIKVPGCPPIPDVMSAII 205 C ++G V AA N T+A + + + P I + GCP P + + Sbjct: 137 CTAYGGVSAAGDNVTEACGLAFEGAEPGGLLGPGFRSHSGLPAINIAGCPTHPGWIVETL 196 Query: 206 TYM-VTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKM 264 + D+D GRP + +H C R ++ ++ + + G + + Sbjct: 197 VQLGDGTFSASDLDTYGRPRFYADHLVHHGCTRNEFYE----YKASAKEPGQLGCLMEHL 252 Query: 265 GCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYSRVVDIPQMGTHSTA 324 GC G + C+ WN G I+ G+ C+GC E F +R + Y ++ P+ G Sbjct: 253 GCIGTQVHGDCNMRAWN-GEGSCIRGGYPCIGCTEPTFGERDAPY---LETPKRG----G 304 Query: 325 DTVGLTALGVVAAAVGVHAVAS-AVDQRRRHNQQPTETEHQPGNEDKQA 372 VGL A V + ++A A +R R N PG +A Sbjct: 305 IPVGLPTDMPKAWFVALASLAKAATPERLRKNALAERIAVPPGQASGKA 353 >UniRef50_D2ATL3 NADH ubiquinone oxidoreductase, 20 kDa subunit n=10 Tax=Bacteria RepID=D2ATL3_STRRD Length = 358 Score = 287 bits (735), Expect = 4e-76, Method: Composition-based stats. Identities = 82/354 (23%), Positives = 149/354 (42%), Gaps = 44/354 (12%) Query: 47 ENKPRIPVVWIH-GLECTCCTESFIRSAHPLAKDVILSLIS-----------LDYDDTLM 94 + +P + ++WI+ GL C + + + P ++++L + +D++ M Sbjct: 15 QEEPVVHILWINAGLSCDGDSVALTAATQPSIEEIVLGALPGLPKVAVHWPLIDFESGPM 74 Query: 95 AAAGTQAEEVFEDIITQYNGKYILAVEGNPP---LGEQGMFC-----ISSGRPFI--EKL 144 A E F+ ++L VEG+ P + ++G +C +G+P E L Sbjct: 75 QGADVFIEWFFKAD-RGELDPFVLVVEGSIPNESIKQEGYWCGFGNNPETGQPMTTSEWL 133 Query: 145 KRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVI-------TDKPIIKVPGCPPI 197 R A A+A++A GTCA++G + A NPT A + + PI+ VPGCP Sbjct: 134 DRLAPKATAVLAAGTCATYGGIHAMAGNPTGAMGVADYLGWDWRSKAGLPIVNVPGCPIQ 193 Query: 198 PDVMSAIITYMV----TFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDD 253 PD +S I Y++ + +D RP +GQ +H+ C R +++ G+F + Sbjct: 194 PDNLSETILYLLYQVAGQAPMIPLDEALRPTWLFGQTVHEGCDRAGYYEQGQFATEYGSP 253 Query: 254 AARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYSRVV 313 CL K+GC GP W +G+ G C+ C GF D+ + + Sbjct: 254 K-----CLVKIGCWGPVVKCNVPKRGWMNGIGGCPNVGGICIACTMPGFPDKFMPF---M 305 Query: 314 DIPQMGTHSTADTVGLTALGVVAAAVGVHAVASAVDQRRRHNQQPTETEHQPGN 367 D P S+ + ++ + + V + + R + T ++ Sbjct: 306 DEPPGARVSSTVSGAYGSVIRTLRGITLKTVDK--EPKWRKKGRELLTGYKASW 357 >UniRef50_D2QHS8 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QHS8_9SPHI Length = 326 Score = 286 bits (733), Expect = 7e-76, Method: Composition-based stats. Identities = 68/271 (25%), Positives = 117/271 (43%), Gaps = 23/271 (8%) Query: 53 PVVWIHGLECTCCTESFIRSAHPLAKDVILSL-ISLDYDDTLMAAAGTQAEEVFEDIITQ 111 V+W+ G C+ T SF+ + P D++ +++ + ++ G Q + DI++ Sbjct: 3 NVLWLQGGACSGNTMSFLNAEEPTVVDLVTDFGVNILWHPSIGLEIGDQVTHLLNDIVSG 62 Query: 112 YNGKYILAVEGNPPLGEQGMFCI--SSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAA 169 IL EG+ G G + + RP + ++ + ++A G CA+WG + A Sbjct: 63 RTQCDILVYEGSIIQGPNGTGTMNYFADRPMQDWVRDLSKVVGYVVAIGDCATWGGIPAV 122 Query: 170 RPNPTQATPIDKVIT--------------DKPIIKVPGCPPIPDVMSAIITYMVTFDRLP 215 PNP+++T + + P+I +PGCP PD ++ I+ + T Sbjct: 123 APNPSESTGMQFLKKAKGGFLGSDYVSKGGLPVINIPGCPAHPDWITQILVAIATGRIGD 182 Query: 216 DV-DRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNA 274 + D RP F+ + C F + R G Y++GC+GP T + Sbjct: 183 VLIDEYHRPKTFFTDFVQTGCTNVVSFAQ----KVDGGFGKRGGCLFYEVGCRGPMTRAS 238 Query: 275 CSSTRWNDGVSFPIQSGHGCLGCAENGFWDR 305 C+ WN S ++ H CLGC E GF Sbjct: 239 CNRILWNRQ-SSKTRANHPCLGCTEPGFPHH 268 >UniRef50_A3MWH6 Nickel-iron dehydrogenase small subunit, N-terminal domain protein n=4 Tax=Thermoproteaceae RepID=A3MWH6_PYRCJ Length = 442 Score = 286 bits (731), Expect = 1e-75, Method: Composition-based stats. Identities = 103/436 (23%), Positives = 165/436 (37%), Gaps = 106/436 (24%) Query: 13 RQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFIRS 72 +TRR F++ SLAA L K A + +VW +C T + I++ Sbjct: 1 MVKITRRDFIRAGSLAAALSALNWSALVKAAGEAVRSGAVNIVWFEAQDCAGNTTAVIQA 60 Query: 73 AHPLAKDVILSL--------ISLDYDDTLMAAAGT------------------------- 99 P DV+L + L + +T+M GT Sbjct: 61 TDPSLLDVLLGTTPLVGPGTVRLIFHETVMPQWGTYHVKQASDVASEKILESYVEHQPPP 120 Query: 100 -QAEEVFEDIITQYNGKYILAVEGNPPL----------GEQGMFCISSGRPFIEKLKRAA 148 A ++ E+I G Y+L +EG+ P E G +C+ + LK Sbjct: 121 GDAMKILEEIAQGKYGPYVLVLEGSFPQEYGIEGSNIKQEGGYYCVVGHKTCTAWLKSLL 180 Query: 149 AGASAIIAWGTCASWGCVQAAR--------------PNPTQATP---------------- 178 A A++A G CA++G + A + P+PT A Sbjct: 181 NNALAVVAVGNCAAYGGLVANKVLEPPPGFTYPTWSPSPTGAIGFFDDPIRGIKGAIHQP 240 Query: 179 -----------------IDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDR---LPD-- 216 + T KP + VPGCP + + + + PD Sbjct: 241 YFQPEIEPFRKYIDEGGVPDFKTIKPAVAVPGCPANGNGILRTLALLTLVAAGYLKPDVL 300 Query: 217 -----VDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTT 271 +D+ RP + +H++C R A + AG F + A G CL+++GCKGP + Sbjct: 301 ERKAFLDKYARPRFIFELTVHEQCPRAAWYAAGNFRPT---PGAGDGKCLFEVGCKGPIS 357 Query: 272 YNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYSRVVDIPQMGTHSTADTVGLTA 331 + W GV P ++G C+GC GF D + ++ P++ +TA VG+ Sbjct: 358 NCPWNKVGWVSGVGGPTRTGGVCIGCTMPGFTDAYEPFWAPLNAPRL-PDTTAIAVGVG- 415 Query: 332 LGVVAAAVGVHAVASA 347 GV A+G +A+A A Sbjct: 416 TGVALGALGAYALARA 431 >UniRef50_D1VJL8 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Actinobacteria (class) RepID=D1VJL8_9ACTO Length = 416 Score = 284 bits (728), Expect = 3e-75, Method: Composition-based stats. Identities = 85/359 (23%), Positives = 144/359 (40%), Gaps = 42/359 (11%) Query: 37 GMAPKIAWALENKPRIPVVWIH-GLECTCCTESFIRSAHPLAKDVILSLI----SLDYD- 90 +AP+ A E++ I ++WI+ GL C + + + P +++ L + + Sbjct: 44 QVAPERVPAWEDQAPIHLLWINAGLSCDGDSVALTAATQPSIEEIALGALPGLPKVAVHW 103 Query: 91 DTLMAAAG-----TQAEEVFEDIITQYNGKYILAVEGNPP---LGEQGMFC-----ISSG 137 + +G E F ++L VEG+ P + G + ++G Sbjct: 104 PLIDFDSGPEQGADAFLEWFRKADRGELDPFVLVVEGSIPNERINGDGYWTGFGSDQATG 163 Query: 138 RPFI--EKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVI-------TDKPI 188 +P L R A A A++A GTCA++G + A NPT A + + PI Sbjct: 164 QPITVNAWLDRLAPKALAVLAVGTCATYGGIHAMAGNPTGAMGVPDYLGWDWKSSAGIPI 223 Query: 189 IKVPGCPPIPDVMSAIITYMV----TFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAG 244 + VPGCP PD +S I Y++ + +D RP +G +HD C R ++ G Sbjct: 224 VCVPGCPIQPDNLSETIVYLLYQASGQAPMIPLDDQLRPRWLFGTTVHDGCDRAGFYEEG 283 Query: 245 EFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWD 304 F ++ + CL K+GC GP W +GV G C+ C GF D Sbjct: 284 RFAHAYGEPE-----CLVKLGCWGPVVKCNVPKRGWMNGVGGCPNVGGICIACTMPGFPD 338 Query: 305 RGSFYSRVVDIPQMGTHSTADTVGLTALGVVAAAVGVHAVASAVDQRRRHNQQPTETEH 363 R + +D P S+ + + + + +H + + R R T + Sbjct: 339 RFMPF---MDTPPGAKVSSGLSTVYGKVILNLRKITMH--TADREPRWRRPGDELLTGY 392 >UniRef50_C1DUE6 Hydrogenase-2, small subunit n=1 Tax=Sulfurihydrogenibium azorense Az-Fu1 RepID=C1DUE6_SULAA Length = 312 Score = 284 bits (727), Expect = 3e-75, Method: Composition-based stats. Identities = 77/309 (24%), Positives = 125/309 (40%), Gaps = 24/309 (7%) Query: 44 WALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEE 103 A K +VWI GL C + SF+ S + DV LS I++ Y M + + ++ Sbjct: 1 MAGTKKGLKNLVWIQGLTCNGNSHSFL-SINDTMLDVFLSNINILYHP--MLTSEMEFKD 57 Query: 104 VFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASW 163 V++ +++ L VEG + +F G E L + I+A G CA + Sbjct: 58 VYKLLLSGKESLNFLVVEGAVNTKKDEVF--FQGFDVFEILNNLKDKSDYILAVGNCACY 115 Query: 164 GCVQAARPNPTQATPID------------KVITDKPIIKVPGCPPIPDVMSAIITYMVTF 211 G A + K + PII + GCP P+ + I + F Sbjct: 116 GNFPALYNENVKGLQYRFKDKGGFLGEDFKTKSGYPIINITGCPAHPEWIVRTIL-SLNF 174 Query: 212 DRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTT 271 +D + RP FY HD C R +F+ + + ++G Y++GC+GP T Sbjct: 175 GYDIKLDNLNRPKDFYMYLAHDGCIRNEYFE---WKVEAHEFGTKEGCLFYELGCRGPLT 231 Query: 272 YNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYSRVVD--IPQMGTHSTADTVGL 329 ++ C+ WN+ S +SG C+GC E F R ++ + IP+ + Sbjct: 232 HSPCNKILWNEK-SSKTRSGMPCIGCTEFDFPLRSKYFETKTNIGIPEEVPLGVTKRAYI 290 Query: 330 TALGVVAAA 338 GV Sbjct: 291 MLSGVAKTF 299 >UniRef50_Q2W8A6 Ni,Fe-hydrogenase I small subunit n=4 Tax=Proteobacteria RepID=Q2W8A6_MAGSA Length = 384 Score = 283 bits (724), Expect = 8e-75, Method: Composition-based stats. Identities = 84/333 (25%), Positives = 134/333 (40%), Gaps = 26/333 (7%) Query: 38 MAPKIAWALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSL-ISLDYDDTLMAA 96 M ++A + + W+ C T SF+ S P + L I + Y +L Sbjct: 61 MMKEVAGGRRPGMNLNLYWLQCGGCGGDTMSFLNSETPDILQLFSGLGIDVVYHPSLSNT 120 Query: 97 AGTQAEEVFEDIITQYNGKYILAVEGNPPLGE--QGMFCISSGRPFIEKLKRAAAGASAI 154 + + E I + IL VEG G GM+ RP + + A A + Sbjct: 121 SQAEQHSQLEVISSGEMPLDILVVEGAVLRGPAGTGMYDTKGRRPKKDIVAALARQARFV 180 Query: 155 IAWGTCASWGCVQA-----------ARPNPTQATPID-KVITDKPIIKVPGCPPIPDVMS 202 +A GTCA++G A R P D + + P++ + GCP P V+S Sbjct: 181 VAAGTCAAFGGFGARTEIEATGLQFHRSEPGGFLGADFRAKSGLPVLNLSGCPCHPQVLS 240 Query: 203 AIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLY 262 +++T + T LP + + RPL +YG +H C R + + + +D+ KG + Sbjct: 241 SVLTALATGAELP-LAPLNRPLPWYGMMVHQGCTRNEYHE----YRVEEDNFGEKGCLFF 295 Query: 263 KMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFW-DRGSFYSRVVDIPQMGTH 321 MGC GP C+ WN S ++G C GC F D F +R ++ + Sbjct: 296 HMGCHGPLVTGPCNKLLWNQ-RSSKTRAGVPCFGCTSPEFPQDHAFFETRNIEGIPLDLP 354 Query: 322 STADTVGLTALGVVAAAVGVHAVASAVDQRRRH 354 + + V+AAA A + QRR Sbjct: 355 NGINRAHYMVYKVMAAA----AAPERLRQRRTD 383 >UniRef50_C0QPV6 Hydrogenase-2, small subunit n=7 Tax=Bacteria RepID=C0QPV6_PERMH Length = 306 Score = 279 bits (714), Expect = 1e-73, Method: Composition-based stats. Identities = 71/302 (23%), Positives = 119/302 (39%), Gaps = 27/302 (8%) Query: 53 PVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQY 112 ++WI GL C+ ++SF+ +P D S I+L + + + ++ I Sbjct: 3 NLLWIQGLTCSGNSQSFLCGENPTVSD-FFSEINLLWHPEISYS--EDIMDILNGIYRDE 59 Query: 113 NGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPN 172 L +EG F + + + A IIA G CA G A N Sbjct: 60 IKLDFLIIEGAV--TSNKRFHRIGKYSIKYIINKLKSKADYIIAVGNCAVHGNYPALY-N 116 Query: 173 PTQATPIDKVITDK--------------PIIKVPGCPPIPDVMSAIITYMVTFDRLPDVD 218 P Q T I + K P+I + GCP P+ ++ + +++ +D Sbjct: 117 PDQITGIQFGLNGKKGLLPQKFRTKSGYPVINITGCPVHPEWITKTVL-TLSYGLDLKLD 175 Query: 219 RMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSST 278 RP Y HD C R +F+ + ++ ++G Y++GC+GP T+ C+ Sbjct: 176 SQNRPKELYMYLSHDGCTRNEYFE---WKVEAEEFGTKEGCLFYELGCRGPVTHAPCNRI 232 Query: 279 RWNDGVSFPIQSGHGCLGCAENGFWDRGSFYS--RVVDIPQMGTHSTADTVGLTALGVVA 336 WN G S ++G C+GC E F R ++ + + IPQ + GV Sbjct: 233 LWN-GRSSKTRAGMPCIGCTEFDFPYRENYLETKKYMGIPQDIPLGVTKRAYIMITGVAK 291 Query: 337 AA 338 Sbjct: 292 TF 293 >UniRef50_Q79IP7 Regulatory n=46 Tax=Proteobacteria RepID=Q79IP7_RALEH Length = 347 Score = 277 bits (708), Expect = 5e-73, Method: Composition-based stats. Identities = 77/328 (23%), Positives = 134/328 (40%), Gaps = 32/328 (9%) Query: 45 ALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSL-ISLDYDDTLMAAAGTQAEE 103 A + V+WI C C+ S + + ++ S I + + +L +G + + Sbjct: 10 ASAKPGVLNVLWIQSGGCGGCSMSLLCADTTDFTGMLKSAGIHMLWHPSLSLESGVEQLQ 69 Query: 104 VFEDIITQYNGKYILAVEGNPPLGEQG----MFCISSGRPFIEKLKRAAAGASAIIAWGT 159 + ED + + L VEG G G +G P IE + R AA A +A GT Sbjct: 70 ILEDCLQGRVALHALCVEGAMLRGPHGTGRFHLLAGTGVPMIEWVSRLAAVADYTLAVGT 129 Query: 160 CASWGCVQAARPNPTQATPID--------------KVITDKPIIKVPGCPPIPDVMS-AI 204 CA++G + A NPT A + + P+I V GCP P ++ A+ Sbjct: 130 CAAYGGITAGGGNPTDACGLQYEGDQPGGLLGLNYRSRAGLPVINVAGCPTHPGWVTDAL 189 Query: 205 ITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKM 264 D+D +GRP + Q +H C R +++ ++ + + G + M Sbjct: 190 ALLSARLLTASDLDTLGRPRFYADQLVHHGCTRNEYYE----FKASAEKPSDLGCMMENM 245 Query: 265 GCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYSRVVDIPQMGTHSTA 324 GCKG + C++ WN G + G+ C+ C E GF + G + + + Sbjct: 246 GCKGTQAHADCNTRLWN-GEGSCTRGGYACISCTEPGFEEPGHPFHQTPKV-------AG 297 Query: 325 DTVGLTALGVVAAAVGVHAVASAVDQRR 352 +GL A V + +++ + +R Sbjct: 298 IPIGLPTDMPKAWFVALASLSKSATPKR 325 >UniRef50_C0BH99 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Flavobacteria bacterium MS024-2A RepID=C0BH99_9BACT Length = 384 Score = 275 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 70/310 (22%), Positives = 125/310 (40%), Gaps = 43/310 (13%) Query: 52 IPVVWIHGLECTCCTESFIRSAHPLAKDVILSLIS-----LDYDDTLMAAAGTQAEEVFE 106 + WI G C C+ + + + P ++++ I + + L AG + + F Sbjct: 20 VHAFWIAGGSCDGCSIATVGATSPSVENLLNGTIPGAAKVILHHPVLAVNAGEEFMKPFR 79 Query: 107 DIITQYNG-KYILAVEGNPPLGEQGMFCISSGR-----------------PFIEKLKRAA 148 G +++ EG+ ++GM + G P + R + Sbjct: 80 LAAKGELGAPFVVLCEGSI--MDEGMAAETGGYWSGLGADEDENGDPQPIPSSSWVTRMS 137 Query: 149 AGASAIIAWGTCASWGCVQAARPNPTQATPIDKVIT-------DKPIIKVPGCPPIPDVM 201 A+A++A GTCA+WG + AA NPT + + ++ P++ +PGC P D + Sbjct: 138 EHAAAVVAVGTCATWGGIPAAANNPTNSASVMDLLGEDYRSTLGLPVVNIPGCAPQGDNI 197 Query: 202 SAIITYMVTF----DRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARK 257 + I ++ F LP+ D +GRP + + +H C R ++ G F + D Sbjct: 198 TETIVSVLMFLNGLTPLPEFDELGRPSWLFDETVHRGCTRAGFYEEGNFAEEHGDKE--- 254 Query: 258 GYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYSRVVDIPQ 317 CL ++GC GP + + V + G C+GC GF D + + + P Sbjct: 255 --CLVEVGCWGPVVQCNINKRGAINHVGGCMNVGAPCIGCTMPGFPDSFAPFYKTP--PG 310 Query: 318 MGTHSTADTV 327 S V Sbjct: 311 TMVSSNISRV 320 >UniRef50_A6QAV6 Ni-Fe hydrogenase, small subunit HupS n=3 Tax=Epsilonproteobacteria RepID=A6QAV6_SULNB Length = 298 Score = 267 bits (682), Expect = 6e-70, Method: Composition-based stats. Identities = 80/303 (26%), Positives = 136/303 (44%), Gaps = 29/303 (9%) Query: 46 LENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVF 105 ++++ + ++W+ + C T SF+ HP ILS L + L +A Sbjct: 1 MQSRNKPKLLWLQSITCNGNTHSFLN--HPELFS-ILSHFELVHHPVLESAY------TL 51 Query: 106 EDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGC 165 E++I +L VEG E+G + SG LK+ A A II+ GTCA++G Sbjct: 52 ENVIKGEVPCDLLIVEGA--FKEEGF--LKSGVEVSSVLKKYADKAKYIISAGTCATFGG 107 Query: 166 VQAARPNPTQATPIDKVITDK---------PIIKVPGCPPIPDVMSAIITYMVTFDRLPD 216 + +P + + +K +I +PGCP P +S ++ + + +++P Sbjct: 108 I-FKENDPEEISGFCFDGEEKTPRYESYASKLISLPGCPIHPRWLSYLLLMIASGNKVP- 165 Query: 217 VDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACS 276 +D + RP+ YG +H C R +F+ + + ++G Y+ GC+GP T +C+ Sbjct: 166 LDTLHRPVELYGYTVHTGCTRNEYFEWKIDAKQFG---VKEGCLFYEQGCQGPYTRGSCN 222 Query: 277 STRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYSRV-VDIPQMGTHSTADTVGLTALGVV 335 WND S + G C GC E GF G + ++ + IP LT GVV Sbjct: 223 KILWND-TSSKTRVGTPCFGCTEPGFPQAGLYRTKTHMGIPATMPLGIPRRAYLTLTGVV 281 Query: 336 AAA 338 + Sbjct: 282 KSF 284 >UniRef50_B1Y6B2 NADH ubiquinone oxidoreductase 20 kDa subunit n=3 Tax=Proteobacteria RepID=B1Y6B2_LEPCP Length = 313 Score = 266 bits (680), Expect = 9e-70, Method: Composition-based stats. Identities = 69/288 (23%), Positives = 121/288 (42%), Gaps = 25/288 (8%) Query: 54 VVWIHGLECTCCTESFIRSAHPLAKDVILSL-ISLDYDDTLMAAAGTQAEEVFEDIITQY 112 ++W+ C + + + + P + ++ S I L + +L + + V + I+ Sbjct: 4 LLWLQTGSCGGDSLAILSADSPSLEQLLDSYSIELLWHPSLSNGHARRLDRVIDQILAGE 63 Query: 113 NGKYILAVEGNPPLGEQGM--FCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAAR 170 IL VEG+ G +G + G + ++ AA A A++A GTCA++G + AA Sbjct: 64 QALDILCVEGSIITGPRGTGLYDPWRGGAKMNLVRDLAAKAGAVVAMGTCAAYGGIHAAP 123 Query: 171 PNPTQATPID--------------KVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPD 216 PNP+ T + + + P+I V GCP P M+ + + L Sbjct: 124 PNPSDCTGLQFDHEQPGGLLGPGWRSRSGMPVINVAGCPAHPHAMTQTLAALAAGLPLEL 183 Query: 217 VDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACS 276 D + RP+ + +H C R + + D K + +GC+GP T C+ Sbjct: 184 -DAIHRPVSHFSTMVHQGCTRNEYHEYNI----EDSTPGGKACMFFNLGCQGPLTRAVCN 238 Query: 277 STRWNDGVSFPIQSGHGCLGCAENGFWDRGSFY--SRVVDIPQMGTHS 322 + WN GVS ++G C GC F G + ++ D+P Sbjct: 239 TDLWN-GVSSKTRAGVPCFGCTSPNFPHDGDLFSTEKIGDVPIRLPLG 285 >UniRef50_Q30QL6 Ni-Fe hydrogenase, small subunit n=2 Tax=Campylobacterales RepID=Q30QL6_SULDN Length = 293 Score = 258 bits (660), Expect = 2e-67, Method: Composition-based stats. Identities = 71/303 (23%), Positives = 119/303 (39%), Gaps = 32/303 (10%) Query: 46 LENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVF 105 +E K R ++W+ + C T SF+ H + L Y + + Sbjct: 1 MEKKMR--ILWLSAITCNGNTHSFLNYPH---MEQFLDDFEFIYHPVIDSKY------SL 49 Query: 106 EDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGC 165 ++I++ +L +EG G P E +K + I+ GTCA++G Sbjct: 50 QEIVSNEIECEVLIIEGAISEE-----FQRGGVPIFEIIKNYSKRVQKILTVGTCATFGG 104 Query: 166 V-QAARPNPTQATPIDKVIT--------DKPIIKVPGCPPIPDVMSAIITYMVTFDRLPD 216 + + + T D+ DK I + GCP P+V+ + Y + L Sbjct: 105 IFRESDYKDTAGMHFDQDRALHNFSDFLDKT-ISISGCPIHPEVLVNTL-YAIKKSVLLR 162 Query: 217 VDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACS 276 VD RP FY +H+ C R +F+ + +G Y GC+ P T+ +C+ Sbjct: 163 VDNFLRPKEFYAYTVHNGCTRNEYFE---YKVDNHKFGELEGCMFYDHGCQAPFTHGSCN 219 Query: 277 STRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYSRV-VDIPQMGTHSTADTVGLTALGVV 335 WN+ V+ ++G C GC E F F ++ + IP+ V LT G+ Sbjct: 220 KILWNE-VNSKTRAGVPCFGCTEPSFPRDNLFNTKKNMAIPEHLPLGVNKRVYLTLAGIT 278 Query: 336 AAA 338 A Sbjct: 279 KAF 281 >UniRef50_B9L8N0 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Nautilia profundicola AmH RepID=B9L8N0_NAUPA Length = 288 Score = 246 bits (629), Expect = 7e-64, Method: Composition-based stats. Identities = 67/312 (21%), Positives = 124/312 (39%), Gaps = 30/312 (9%) Query: 51 RIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIIT 110 ++ V+WI + C CT SF+ + + ++ +Y ++ Sbjct: 4 KLNVIWIDAVTCYGCTHSFLNYKEISS---LFEKVNFEYHPLFLSND------------L 48 Query: 111 QYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCV--QA 168 + +L VEG G E + + A ++A GTCA +G + + Sbjct: 49 EIKQCDLLIVEGALKNNYP-----RLGYSLNELISKLFFKAKKVLALGTCAVYGGMFGEG 103 Query: 169 ARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYG 228 N Q K II +PGCPP PD ++ ++ M++ ++ +D + RP + Sbjct: 104 LMYNKEQKGHYYKC--RDKIINLPGCPPHPDWIAFVL-DMISENKKIALDDLNRPKDIFA 160 Query: 229 QRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPI 288 H C R +F+ +++ ++G Y GC+GP T+++C+ WN+ VS Sbjct: 161 YTSHMGCTRNEYFEWKIDAENFG---TKEGCLFYFQGCQGPFTHSSCNKVLWNE-VSSKP 216 Query: 289 QSGHGCLGCAENGFWDRGSFYS-RVVDIPQMGTHSTADTVGLTALGVVAAAVGVHAVASA 347 ++G C GC E F F + + IP + LT G+ + Sbjct: 217 RAGTPCFGCTEPNFPKNDLFKTDTFMGIPANIPLGVSKRAYLTLSGIAKSLNNERLSCKL 276 Query: 348 VDQRRRHNQQPT 359 ++ + N + Sbjct: 277 INYKCGDNNEDK 288 >UniRef50_A4YFB4 Nickel-iron dehydrogenase small subunit, N-terminal domain protein n=1 Tax=Metallosphaera sedula DSM 5348 RepID=A4YFB4_METS5 Length = 432 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 87/406 (21%), Positives = 128/406 (31%), Gaps = 104/406 (25%) Query: 14 QGVTRRSFLKYCSLAATSLGL---GAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFI 70 G+TRR FLK + A L G ++ A E I +VW C T +FI Sbjct: 1 MGLTRRDFLKVSGVTALGTSLALSGLSYEELLSKAQEADQPINIVWTGNGWCGGNTIAFI 60 Query: 71 RSAHPLAKDVI-------------------LSLISLDYDDTLMAAAGTQAEEVFEDIITQ 111 + +P +DV+ L +I+L Y LM A E + Sbjct: 61 DAMNPSVEDVVTGVYFNGKPITLRQPSIPDLGMINLVYHPILMP-QDNMAYATMEMALNG 119 Query: 112 YNGKYILAVEGNP-------PLGEQGMFCISSGRP-------FIEKLKRAAAGASAIIAW 157 ++L VEG G F S+GR E + A+A++A Sbjct: 120 ELDPFVLVVEGTMFDEFGVYYKKPSGSFWCSAGRKPDGSVLLCDEFVFNLMKKAAAVVAT 179 Query: 158 GTCASWGCVQAARP-----NPTQATPI-----------------------------DKVI 183 G CA++G + A +PT A + + Sbjct: 180 GACATYGGIPATTNGLGQRSPTYAMGMLDDPYRGIYGFPYYVHQVYTQDLAPDIIDQDIY 239 Query: 184 T---------------------DKPIIKVPGCPPIPDVMSAIIT----YMVTFDRLP--D 216 + PII + PP D + + Y+ P D Sbjct: 240 SVTNSPVNTSWPGPSYHWLSTAGLPIISIAADPPAGDWIMRTLVSAVLYLRGLGPNPADD 299 Query: 217 VDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACS 276 +D RP FYG H C R F G F + D C Y +GCKG + Sbjct: 300 LDVFNRPKFFYGNETHQNCPRAGFFAQGIFAYEFGDPQ-----CTYSLGCKGTEANSPAP 354 Query: 277 STRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYSRVVDIPQMGTHS 322 G G C+ C GF D + + P + + + Sbjct: 355 LLG-WVGGVGGCTRGGVCIACTAPGFPDLYEPFYAPPNAPTIPSTT 399 >UniRef50_A2BMI5 NiFe hydrogenase n=1 Tax=Hyperthermus butylicus DSM 5456 RepID=A2BMI5_HYPBU Length = 506 Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 8/173 (4%) Query: 186 KPIIKVPGCPPIPDVMSAIITYMVTFDR----LPDVDRMGRPLMFYGQRIHDKCYRRAHF 241 KP + VPGCP + +T ++ + + LP++D+ RP + +G +H++C R + Sbjct: 335 KPAVAVPGCPSNGNAQLKTLTNLILWVKGELPLPELDQYWRPKIIFGGSVHEQCPRNEKY 394 Query: 242 DAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENG 301 AG + G CL+ +GCKGP + + W +GV P ++G C+GC G Sbjct: 395 RAGILRSEPGEP---SGACLFSVGCKGPISNCPYNKIGWVNGVGGPTRTGGVCIGCTMPG 451 Query: 302 FWDRGSFYSRVVDIPQMGTHSTADTVGLTALGV-VAAAVGVHAVASAVDQRRR 353 F D Y + + P S A + A V V AA G+ +A ++ + Sbjct: 452 FMDAYEPYYKPLPAPVKPEASAATELAAGAAVVGVLAAYGIRKLAGGEKEKEK 504 Score = 95.8 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 54/148 (36%), Gaps = 16/148 (10%) Query: 16 VTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFIRSAHP 75 ++RR FLK A L + A+A I +VW +C T S I++ P Sbjct: 6 LSRRQFLKLAGTTALLASLDWRKLIRRAFAELETGGISLVWFEAQDCAGDTTSLIQATEP 65 Query: 76 LAKDVILSLISLD--------YDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLG 127 +V+ L +L + +T+M G + + Y+L +EG P Sbjct: 66 DIVEVLAGLTNLTPPGAVVLPFHETVMPEWGFGSIAHLLLALGGVYDPYVLILEGAMPPD 125 Query: 128 EQ-------GMFCISSG-RPFIEKLKRA 147 E M C +E L++ Sbjct: 126 EDLTGIKGTNMLCYIGDYETVMESLEKL 153 >UniRef50_D1TP47 Ni Fe-hydrogenase I small subunit-like protein n=1 Tax=Burkholderia sp. CCGE1002 RepID=D1TP47_9BURK Length = 303 Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats. Identities = 55/87 (63%), Positives = 68/87 (78%) Query: 241 FDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAEN 300 F G ++WDD+AAR+GYCLYK+GCKGPTTYNACS+ RWN G SFPIQ+GHGC+GC+E Sbjct: 180 FRRGPVRRAWDDEAARRGYCLYKVGCKGPTTYNACSTVRWNRGTSFPIQAGHGCIGCSEE 239 Query: 301 GFWDRGSFYSRVVDIPQMGTHSTADTV 327 GFWD+GS Y R+ I Q G + AD + Sbjct: 240 GFWDKGSIYDRLTRIDQFGVEANADKI 266 >UniRef50_D2BHA4 Nickel-dependent hydrogenase, group 3, small subunit n=5 Tax=Dehalococcoides RepID=D2BHA4_DEHSV Length = 312 Score = 90.8 bits (224), Expect = 8e-17, Method: Composition-based stats. Identities = 54/284 (19%), Positives = 87/284 (30%), Gaps = 74/284 (26%) Query: 62 CTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAA--GTQAEEVFEDIITQYNGKYILA 119 C C S + PL +L + + + LM G + + + +I G Sbjct: 12 CGGCELSILDIGEPLLD--VLPNLKIVHMPVLMDHKLLGQKGDGIKYEIPEADLG----I 65 Query: 120 VEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARP-------- 171 + G E E I+A GTCA +G + A Sbjct: 66 ITGGIRNEEN-----------RELALEMRKKCKLIVALGTCACFGGIPALANLSTTEDML 114 Query: 172 -------------NPTQATP----IDKVITDKPIIKV----PGCPPIPDVMSAIITYMVT 210 +P +D+V II V PGCPP P + ++T ++ Sbjct: 115 KQVFSKEKGTDPASPPGDKSLPKMLDRVYAVDEIITVDIHLPGCPPTPAHIVELLTAVLA 174 Query: 211 FDR--LPDVDRMGRPLMFYGQRIHDKCY--RRAHFDAGEFVQSWDDDAARKG-----YCL 261 LP+ + + D C R G + + G CL Sbjct: 175 GKTFALPE------------RSVCDTCPTIREKQSTGGSIKRPLQNAQFTPGRYDNMRCL 222 Query: 262 YKMG--CKGPTTYNACSSTRW---NDGVSFPIQSGHGCLGCAEN 300 + G C GP T C+ ++ + I++ C GC Sbjct: 223 NEQGLFCLGPVTKAGCNRILGADPSEEIPRCIKAYMPCRGCFGP 266 >UniRef50_Q58591 F420-non-reducing hydrogenase vhu subunit G n=13 Tax=Methanococcales RepID=VHUG_METJA Length = 288 Score = 88.5 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 51/279 (18%), Positives = 91/279 (32%), Gaps = 79/279 (28%) Query: 52 IPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQ 111 + V I C+ C S + L + +L + + Y + D Sbjct: 6 VKVGMIQLCGCSGCHISLLDLHDKLLE--VLPNLEIVYAPII------------ADPKEI 51 Query: 112 YNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARP 171 G + VEG + + +IAWGTCA++G + Sbjct: 52 PEGIDVFLVEGGIRNEHDEH-----------LIHEIREKSKIVIAWGTCAAYGGIPGLGN 100 Query: 172 --------NPTQAT---------------PIDKVITD-KPIIK----VPGCPPIPDVMSA 203 N +T P+++ + K IK +PGCPP P +++ Sbjct: 101 LYKKEELLNYVYSTDSTENKGEIPSEEIPPLEEYVKPIKDFIKVDYTIPGCPPTPKMIAD 160 Query: 204 IITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKG---YC 260 I ++ + P + P + + D+C R+ F +++ + C Sbjct: 161 AIIALLNGEE-PKL-----PT----KIVCDECPRKK---ENVFPETFKRTHEGRPDPERC 207 Query: 261 LYKMG--CKGPTTYNACSSTRWNDGVSFPIQSGHGCLGC 297 L++ G C G T C + +G C GC Sbjct: 208 LFEQGYTCLGFATRAGCGAK--------CPSAGVPCRGC 238 >UniRef50_Q8TYW2 Coenzyme F420-reducing hydrogenase, gamma subunit n=2 Tax=Methanopyrus kandleri RepID=Q8TYW2_METKA Length = 305 Score = 88.5 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 52/275 (18%), Positives = 83/275 (30%), Gaps = 74/275 (26%) Query: 58 HGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYI 117 C C S + H D++ I ++Y V D + Sbjct: 10 QLSSCVGCHVSLLD-LHEKLLDLLEDAIEIEYC------------YVLVDQKEIPEHVNV 56 Query: 118 LAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARP------ 171 +EG+ E +E + A ++A GTCA +G V Sbjct: 57 AVIEGSIRNEED-----------LEVAEELREAADIVVAVGTCACYGGVHGLANLYQLDD 105 Query: 172 -----------------NPTQATP-IDKVITDKP-IIKV----PGCPPIPDVMSAIITYM 208 P + P + + P +I V PGCPP P+ ++ +IT + Sbjct: 106 ILEWVFKETPTTDDEGETPEEVVPELFGYVRPLPEVIDVDYMLPGCPPKPESIAEVITAI 165 Query: 209 VTFDRLPDVDRMGRPLMFYGQRIHDKCYR-RAHFDAGEFVQSWDDDAARKGYCLYKMG-- 265 + DR P++ + ++C R + E CL + G Sbjct: 166 L-EDREPELPTTN---------LCEECPREKEDIPIEEIKFRTGQGRPDPDKCLLEQGYP 215 Query: 266 CKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAEN 300 C GP T C + G C GC Sbjct: 216 CMGPATVAGC--------GAACPSRGLSCRGCNGP 242 >UniRef50_Q53161 Hydrogen uptake hydrogenase small subunit (Fragment) n=2 Tax=Rhodobacteraceae RepID=Q53161_RHOSH Length = 59 Score = 85.8 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 39/59 (66%), Positives = 45/59 (76%) Query: 1 MNNEETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHG 59 M ETFY MRRQG+TRRSF+KYCSL A +LGLG PKIA A+E KPR PV+W+HG Sbjct: 1 MPQIETFYDVMRRQGITRRSFMKYCSLTAAALGLGPSFVPKIAHAMETKPRTPVIWVHG 59 >UniRef50_C8S807 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Ferroglobus placidus DSM 10642 RepID=C8S807_FERPL Length = 299 Score = 82.7 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 53/343 (15%), Positives = 98/343 (28%), Gaps = 81/343 (23%) Query: 49 KPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDI 108 +I + + C+ C SF ++ LS + + Sbjct: 1 MKKIRLAFYTASGCSGCILSFF-----DLEEFFLSS------ERFSVVWAPMFTNSKLED 49 Query: 109 ITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQA 168 + + + +EG+ L E E +K + ++A GTCA +G V Sbjct: 50 LEKIERIDLTFIEGSIRLSEHE-----------EIVKILREKSEKVVALGTCAVFGGVPG 98 Query: 169 ARPNPTQATPIDKVI-----TDKP------------------------IIK----VPGCP 195 + + V KP +I+ VPGCP Sbjct: 99 LSNFYSDEEILSDVFDSDENAPKPRTLLDGKYELTLPEFKDEMKRVEEVIEVDHFVPGCP 158 Query: 196 PIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQR-IHDKCYRRAHFDAGEFVQSWDDDA 254 P + + ++ D D R + + C R+ + + Sbjct: 159 PSKNQLL----------KIIDFDFEER--WIVEKTSVCSVCPRKV--EEIKVSAVKRAFE 204 Query: 255 ARKGYCLYKMG--CKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYSRV 312 G C G C GP T C + I+ C GC F + F ++ Sbjct: 205 KDDGRCFLLQGILCFGPLTPGNC--------EAACIKVNVPCRGCYG-SFPNVRDFGAKF 255 Query: 313 VDIPQMGTHSTADTVGLTALGVVAAAVGVHAVASAVDQRRRHN 355 VD+ +A + + + +A+ ++ Sbjct: 256 VDLISSIAEKNIAEELSRKYPSLARVIYAYTLPAAIINKKVRK 298 >UniRef50_B4SFA2 NADH ubiquinone oxidoreductase 20 kDa subunit n=10 Tax=Chlorobiaceae RepID=B4SFA2_PELPB Length = 258 Score = 82.3 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 49/292 (16%), Positives = 89/292 (30%), Gaps = 89/292 (30%) Query: 38 MAPKIAWALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAA 97 M IA + R+ + C C + ++L Sbjct: 1 MGELIAHQGVSFERLKIASFDFTCCEGCQLQLANREST-----LADFLNLL--------- 46 Query: 98 GTQAEEVFEDIITQYNGKY-ILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIA 156 F ++ ++ + Y I +EG+ ++ +E+L + A ++A Sbjct: 47 ---DIRNFRELSSEQHDDYDIALIEGSISRQDE-----------VERLLKIRQQAKILVA 92 Query: 157 WGTCASWGCVQAARPNPTQATPIDKVITDKPI---------------IKVPGCPPIPDVM 201 +GTCA +G + + + ID V PI + +PGCP + Sbjct: 93 FGTCACFGGINSLKNRFPAREMIDAVYPGMPIETLPVRKISDVVKVDLSIPGCPVDKREV 152 Query: 202 SAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCL 261 I+ +V ++ P Y + + A+ CL Sbjct: 153 ERIVVSLVRGSQITL------PK--YPVCV--------------------ECKAQLNTCL 184 Query: 262 YKMG--CKGPTTYNACSSTRWNDGVSFPIQSGHGCLGC-------AENGFWD 304 +++G C GP T C++ CLGC F D Sbjct: 185 FELGEICLGPITRAGCNAV--------CTTGKTPCLGCRGPSEEINMPAFLD 228 >UniRef50_A0LP54 NADH ubiquinone oxidoreductase, 20 kDa subunit n=7 Tax=Deltaproteobacteria RepID=A0LP54_SYNFM Length = 324 Score = 80.8 bits (198), Expect = 8e-14, Method: Composition-based stats. Identities = 56/284 (19%), Positives = 90/284 (31%), Gaps = 77/284 (27%) Query: 61 ECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAV 120 C C S + + +L I + + L + F + +I Sbjct: 12 SCAGCEISMLNMGGLFLE--LLKEIRIVHMPLL------FDHKYFGQAGEE---NFI--- 57 Query: 121 EGNPPLGEQGMFCISSGRPFIEKLKRAAAGASA----IIAWGTCASWGCVQA-------- 168 P + G I SG E+ A A ++A GTCA+ G + A Sbjct: 58 --GIPEADIG---IVSGGIRNEEQLEVALKVRAQCRILVALGTCATHGGIPALMNRYSDE 112 Query: 169 ----------------ARPNPTQATPIDK--VITDKPIIKV--PGCPPIPDVMSAIITYM 208 A PN +D+ + +K + V GCPP PD + + Sbjct: 113 DLFRRYYRTSETTEAAAPPNEVVPRFLDRTYALDEKARVDVYMAGCPPHPDYL-GAMFRT 171 Query: 209 VTFDRLPDVDRMGRPLMFYGQRIHDKCY-RRA---------HFDAGEFVQSWDDDAARKG 258 + + P++ P + + D C RR F + ++ + Sbjct: 172 LLDGQWPEM-----PT----KSVCDTCPTRREGKGNVQKIRRFTRS--ARFQNEKPLSEM 220 Query: 259 YCLYKMG--CKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAEN 300 CL + G C GP T C+ N V I + C GC Sbjct: 221 KCLLEQGLLCMGPVTRAGCAGLHGN--VPMCISARVPCRGCFGP 262 >UniRef50_Q50782 F420-non-reducing hydrogenase subunit G n=15 Tax=Euryarchaeota RepID=MVHG_METTH Length = 308 Score = 80.0 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 54/292 (18%), Positives = 95/292 (32%), Gaps = 83/292 (28%) Query: 46 LENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVF 105 + K +I +W+ C+ C S + ++ ++ LM Sbjct: 1 MAEKIKIGTMWL--GGCSGCHLSIADFHEKIID--VMEHADFEFSPVLM----------- 45 Query: 106 EDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGC 165 + + ++ +EG E R F E+L+ A +I++GTCA +G Sbjct: 46 DTKYDEIPELDVVIIEGGIVNDEN--------REFAEELRE---KAKFVISYGTCAVYGG 94 Query: 166 VQAAR-------------------PNPTQATPIDKV--ITDK-----PIIK----VPGCP 195 + R PN P + V + + +I VPGCP Sbjct: 95 IPGLRNLWDKDEVIEEAYINSITTPNEEGVIPSEDVPHLEGRVKPLGEVIDVDFEVPGCP 154 Query: 196 PIPDVMSAIITYMVTFD--RLPDVDRMGRPLMFYGQRIHDKCYRRAHFD--AGEF-VQSW 250 P DV + + ++T + LP+ + + C R + A +F + + Sbjct: 155 PRSDVAAEAVMALLTGEEIELPE------------TNLCEVCPREKPPEGLAMDFIKRQF 202 Query: 251 DDDAARKGYCLYKMG--CKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAEN 300 + CL G C GP T + C + C GC Sbjct: 203 EVGKPEDDLCLIPQGLICMGPATVSICGAE--------CPSIAIPCRGCYGP 246 >UniRef50_C8X546 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X546_DESRD Length = 334 Score = 78.5 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 54/309 (17%), Positives = 85/309 (27%), Gaps = 83/309 (26%) Query: 49 KPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDI 108 R+ + C C S + + L + + ++ + Y A + Sbjct: 2 SRRMSIAMNWAGACGGCDVSLLDTQGKLLE--LTAVADVVYWPV--------ALDYKRSD 51 Query: 109 ITQ--YNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCV 166 + I G EQ E +R ++A+G CA G + Sbjct: 52 LEALPEKSVDIGLFNGVVRTSEQ-----------AEDARRLRERCRVLVAYGACACHGGI 100 Query: 167 QAARP-------------------NPTQATPIDK----------------VITDKPIIKV 191 NP Q P + V ++ V Sbjct: 101 PGLANQSDREEIFRVAYQDTVSTDNPDQIRPQQRTPVPGGEVTLPAFHDSVRALHQVVDV 160 Query: 192 ----PGCPPIPDV---MSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAG 244 PGCPP P+ + ++ D LP + P + +C R AG Sbjct: 161 DYFLPGCPPTPERILDLLGVVQAYNAGDDLPPAGSILAPEA----TLCQECPRAETRRAG 216 Query: 245 EF--VQSWDDDAARKGYCLYKMG--CKGPTTYNACSSTRWNDGVSFPIQSGHGCLGC--A 298 + + A C + G C GP T C S I C GC Sbjct: 217 RMPRLYRPHEIVADPETCFLEQGVICMGPFTRGGC--------GSACITVNMPCRGCFGP 268 Query: 299 ENGFWDRGS 307 G +D G+ Sbjct: 269 APGVYDPGA 277 >UniRef50_A6UVU9 Coenzyme F420 hydrogenase n=2 Tax=Euryarchaeota RepID=A6UVU9_META3 Length = 227 Score = 76.2 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 47/253 (18%), Positives = 86/253 (33%), Gaps = 54/253 (21%) Query: 57 IHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKY 116 + C C S + L +L I L Y T+ A + Sbjct: 7 VQLSSCCGCLVSLTDTYEKLLD--VLGAIDLVYSQTIADA-------------REIPEAD 51 Query: 117 ILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCV-------QAA 169 I+ VEG+ L + +E + A ++A G CA+ G + Q + Sbjct: 52 IILVEGSVCLDDHHA---------MEIAQDVGKKAKILVALGACAATGGITRFCRGGQMS 102 Query: 170 RPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQ 229 +P + +PI +V+ + +PGCPP P+++ +IT + D P + + Sbjct: 103 KPIHSSFSPITEVVKCD--LAIPGCPPSPEIIVGLITAAIEGDM-----EYLAPFSEFAK 155 Query: 230 RIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQ 289 + C + ++ + + G GC +C + P+ Sbjct: 156 NNTEAC-------GCDVIEKVVNKSLCMGC-----GC----CAASCPTRAIEMVEGRPLI 199 Query: 290 SGHGCLGCAENGF 302 C+ C GF Sbjct: 200 LNEVCIKCGCCGF 212 >UniRef50_B1L5Y5 Coenzyme F420-reducing hydrogenase, gamma subunit n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L5Y5_KORCO Length = 319 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 49/298 (16%), Positives = 83/298 (27%), Gaps = 80/298 (26%) Query: 48 NKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLI---SLDYDDTLMAAAGTQAEEV 104 K +I W C C E+ D + LI + M E+V Sbjct: 2 AKAKIAFYW--CASCGGCEEA-----QVDLADKLFDLIEAADIVLWPVAMDFKKEDVEKV 54 Query: 105 FEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWG 164 + + G E E +K + +IA+G+CA G Sbjct: 55 ------GDGSIDVAIINGGIRTSEHE-----------EMVKLLRRKSKLVIAYGSCAHMG 97 Query: 165 CVQAARP-------------------NPTQA-----TPIDKVITDKP-----------II 189 + A NP +D + + P +I Sbjct: 98 GIPALANAYTRESILKYVYEEAPTVTNPEGKRPKTRVSVDGMDFELPEFLEYLDPLDAVI 157 Query: 190 K----VPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMF-YGQRIHDKCYRRAHFDAG 244 +PGCPP P++ ++ +++ + P G Y +++ + D Sbjct: 158 DVDYYIPGCPPTPEITWEAVSSILSGNLPPKGHVFGSDRALCYECPLNETKPEKVTIDT- 216 Query: 245 EFVQSWDDDAARKGYCLYKMG--CKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAEN 300 ++ C G C GP T C + I+ C GC Sbjct: 217 --IKRVHQTELDPNKCYLTQGVLCMGPVTRGGCKAL--------CIKGNMPCTGCFGP 264 >UniRef50_B6YSK0 Sulfhydrogenase II, delta chain n=6 Tax=Thermococcaceae RepID=B6YSK0_THEON Length = 246 Score = 72.7 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 47/280 (16%), Positives = 86/280 (30%), Gaps = 99/280 (35%) Query: 49 KPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISL----DYDDTLMAAAGTQAEEV 104 ++ + +C C + + + + L+ ++ MA + Sbjct: 2 MDKLKLAVFELTDCGGCALNIL-----FLYEKLFDLLEFYEITEFH---MATS------- 46 Query: 105 FEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWG 164 +++ + + V G + LK A + +IA GTCA+ G Sbjct: 47 ----LSEGSHYDVALVTGTVSSQRD-----------LALLKEARNHSDYLIALGTCATHG 91 Query: 165 CVQAA---------------RPNPTQATPIDKVITDKPII-------KVPGCPPIPDVMS 202 VQA+ NP + + KP++ +PGCP + + Sbjct: 92 SVQASVEGSIREKLKRVYGDEGNP------MRALDSKPVVEYVAVDFALPGCPYDKNEVY 145 Query: 203 AIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLY 262 ++ + D Y + +C + L Sbjct: 146 QVLMDIAKGIEPVKKD--------YPVCV--ECKLNEY-----------------ECVLV 178 Query: 263 KMG--CKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAEN 300 K G C GP TY C++ I+SG GC+GC Sbjct: 179 KKGLPCLGPITYGGCNAA--------CIRSGLGCIGCRGP 210 >UniRef50_P80491 Coenzyme F420 hydrogenase subunit gamma n=27 Tax=Euryarchaeota RepID=FRHG_METBF Length = 259 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 63/172 (36%), Gaps = 34/172 (19%) Query: 50 PRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDII 109 +I + +H CT C S + ++ L Y TL + Sbjct: 3 NKIKIGHVHMSGCTGCLVSLAD-NNLGLIKILDDYADLVYCLTL-------------ADV 48 Query: 110 TQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCV--- 166 + VEG+ L + +E +K + ++A G+CA +G + Sbjct: 49 RHIPEMDVALVEGSVCLQDHES---------VEDIKETRKKSKIVVALGSCACYGNITRF 99 Query: 167 ----QAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVM--SAIITYMVTFD 212 Q +P PI +I + +PGCPP P+++ A++ Y++ Sbjct: 100 SRGGQHNQPQHESYLPIGDLIDVD--VYIPGCPPSPELIRNVAVMAYLLLEG 149 >UniRef50_B1I576 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I576_DESAP Length = 317 Score = 68.4 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 52/338 (15%), Positives = 100/338 (29%), Gaps = 105/338 (31%) Query: 48 NKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFED 107 +K ++ W C C + + + + ++ + + A + Sbjct: 2 SKLKLASYW--AAACGGCDVAILDIHEKIVD--VAAVADIVFWPI--------AVDFKYA 49 Query: 108 IITQYNGKYI--LAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAI-IAWGTCASWG 164 + Y +I G E E + + S + +A+G+CA G Sbjct: 50 DVEGYEDGFIDVCLFHGAIRNSEG------------EHVAKLLRKKSKVMVAFGSCAISG 97 Query: 165 CVQAARP-------------------NPTQATP----------------IDKVITDKPII 189 + NP + P +V + ++ Sbjct: 98 GIPGLANFKQKNDIFYRVYIESQSTQNPEKVYPQTHYAVPEGVLELPEFYKEVKSLSDVV 157 Query: 190 KV----PGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFY----GQRIHDKCYR---- 237 V PGCPP + A+I + + LP P + Q + + C R Sbjct: 158 DVDYFMPGCPPTSAQIWAVIQVIAS-GALP-------PKGAFVGCENQTLCNTCTRTKTD 209 Query: 238 ---RAHFDAGEFVQSWDDDAARKGYCLYKMG--CKGPTTYNACSSTRWNDGVSFPIQSGH 292 + + + + + CL + G C GP T C + + + Sbjct: 210 KKVKKFYQPYQIITDPEK-------CLLEQGLTCMGPVTRAGC--------GNQCVSANQ 254 Query: 293 GCLGCAEN--GFWDRGSFY-SRVVDIPQMGTHSTADTV 327 C GC G D+G+ Y S + + + AD + Sbjct: 255 PCTGCYGPVDGVIDQGAKYISALASVVDADSPDEADRI 292 >UniRef50_C7NPL1 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Halorhabdus utahensis DSM 12940 RepID=C7NPL1_HALUD Length = 266 Score = 68.1 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 49/273 (17%), Positives = 84/273 (30%), Gaps = 85/273 (31%) Query: 46 LENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVF 105 + + + V + C I +D +L L F Sbjct: 1 MTGEDKPRVAFFDFTGCEGDQLQVIN-----LEDRLLDL------------VEVVEVVSF 43 Query: 106 EDIITQYNGKY-ILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWG 164 + +T+++ +Y I VEG +L A ++A G+CA++G Sbjct: 44 REAMTEHSDEYEIAFVEGGVATAHDER-----------RLTDIRDNADVVVALGSCAAFG 92 Query: 165 CVQAARPNP-----------TQATPIDKVITDKPIIK-------VPGCPPIPDVMSAIIT 206 + A R + A I +PI +PGCP + +T Sbjct: 93 GINALRNHQDFETVKERVYGEDADSITSYPIARPIEDVIEVEYEIPGCPIDREEFLGAVT 152 Query: 207 YMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMG- 265 +V P + P+ +C +F + C ++ G Sbjct: 153 ALVNGAE-PSIPNY--PVCL-------EC---------KFAE---------NTCAFERGE 184 Query: 266 -CKGPTTYNACSSTRWNDGVSFPIQSGHGCLGC 297 C GP T CS+T + +G C GC Sbjct: 185 TCLGPITRGGCSAT--------CVSAGTHCWGC 209 >UniRef50_Q00393 Coenzyme F420 hydrogenase subunit gamma n=3 Tax=Methanococcus RepID=FRHG_METVO Length = 243 Score = 68.1 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 42/172 (24%), Positives = 68/172 (39%), Gaps = 23/172 (13%) Query: 52 IPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQ 111 + + IH CT C S + L IL + L Y TL T+ E + I+ + Sbjct: 2 VKIAHIHMSGCTGCLISLTDTYEKLLD--ILGSVELVYALTLTGEK-TEITETDDKILIE 58 Query: 112 YN---GKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCV-- 166 + G I VEG+ C+ + L +++A G CA+ G V Sbjct: 59 RDIPGGIDIALVEGSV--------CLDDHHSMDDILTTRKNSKKSLVALGACAASGGVTR 110 Query: 167 -----QAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDR 213 Q ++P+ PI VI + +PGCPP + + ++T + D Sbjct: 111 FRRVGQMSQPSHASFVPIGDVIKVD--LALPGCPPSTESIVKLLTAALEGDM 160 >UniRef50_D2REQ3 NADH ubiquinone oxidoreductase 20 kDa subunit n=2 Tax=cellular organisms RepID=D2REQ3_ARCPR Length = 321 Score = 67.3 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 48/297 (16%), Positives = 86/297 (28%), Gaps = 81/297 (27%) Query: 52 IPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLD-YDDTLMAAAGTQAEEVFEDIIT 110 + + ++ C C + + + L L + + + T+ E + + I Sbjct: 3 LKLAYLLVGGCGGCDMAVVDLSEKLVDA--LEHLEIVFWAPTVADVKYKDLEAMPDQSI- 59 Query: 111 QYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAAR 170 + + G E +K I+A+G CA+ G + Sbjct: 60 -----DLGLISGMVRNKENEH-----------LVKVMRQKCKIIVAFGICAALGGIPGMA 103 Query: 171 P-------------------NPTQATP----------------IDKVITDKPIIKVP--- 192 NP P +D+V +I+V Sbjct: 104 NMHKNEELFENAYIKSPSTDNPNNVIPQPVSKEGEFELTLPEFLDRVKPIDEVIEVDYYV 163 Query: 193 -GCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFY-GQRIHDKCYRRA--HFDAGEFVQ 248 GCPP D ++ ++ ++T + P G+ + D C R EFV+ Sbjct: 164 GGCPPHHDHVAKVVEAVITGNLPPK------GSWITNGKAVCDVCARNPAVKGKTREFVK 217 Query: 249 S---WDDDAARKGYCLYKMG--CKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAEN 300 + + CL G C GP T C + + C GC Sbjct: 218 EVKRMHEGIPDEEECLLNQGYLCLGPVTQGDCGAL--------CPKVNIRCAGCGGP 266 >UniRef50_B1ZXG1 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZXG1_OPITP Length = 334 Score = 66.5 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 52/298 (17%), Positives = 85/298 (28%), Gaps = 80/298 (26%) Query: 49 KPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDI 108 P+ V + C C E+ + A VI + + + A + + Sbjct: 1 MPKPKVAFYWCAACGGCEEAIVDFAE-DILGVI-EAVDIVFWPV--------AMDFKKKD 50 Query: 109 ITQYNGKYILA--VEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCV 166 + + I A + G EQ + L+R + +IA+G CA G + Sbjct: 51 VDALPDQGITATFLNGAIRTSEQ--------EEMAQLLRR---KSQFLIAYGACAHLGGI 99 Query: 167 QAARPNPTQATPIDKVITDKPIIK------------------------------------ 190 + + V P I Sbjct: 100 PGLANQFDREQLLSYVYEQTPTIDNPTHVRPQPAHQNNGHSLTLPEFRHTVRSLDQVVAV 159 Query: 191 ---VPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFV 247 +PGCPP P + A IT ++ +LP + P + + ++C R+ A Sbjct: 160 DYYIPGCPPTPKITKAAITALL-EGKLPPRGSVLAPDVA----LCNECARKPSKPATLSF 214 Query: 248 QSWDDDAARK---GYCLYKMG--CKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAEN 300 + K CL G C GP T C + C GC Sbjct: 215 TEFKRPHLAKIDPDLCLLAQGFVCMGPATRAGCEAL--------CPAGNMPCTGCFGP 264 >UniRef50_UPI0001C420D3 coenzyme F420 hydrogenase gamma subunit FrhG n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C420D3 Length = 319 Score = 66.5 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 66/185 (35%), Gaps = 35/185 (18%) Query: 44 WALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEE 103 + + + +IH CT S + ++ ++ + Y TL+ Sbjct: 83 EVEKVADKPKIGYIHMSGCTGDGMSLTENYDI-LSTLLTDMVDIVYGTTLV--------- 132 Query: 104 VFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASW 163 + + + VEG+ C+ E L A + A+G+CA Sbjct: 133 ----DLWEMPEMDLALVEGSV--------CLQDEHSVKE-LMEVREKAGLVCAFGSCAMT 179 Query: 164 GCV-------QAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDR--- 213 GC Q A+P PI ++ I PGCP P++++ ++ ++ D Sbjct: 180 GCFTRYARGGQLAQPKHESFVPISDLVKVDCAI--PGCPASPEIIAKVVVALINGDMDYL 237 Query: 214 LPDVD 218 P +D Sbjct: 238 QPMLD 242 >UniRef50_Q0W6U0 Coenzyme F420-non-reducing hydrogenase (Methyl viologen-reducing hydrogenase), gamma subunit n=3 Tax=Euryarchaeota RepID=Q0W6U0_UNCMA Length = 306 Score = 65.8 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 63/193 (32%), Gaps = 48/193 (24%) Query: 138 RPFIEKLKRAAAGASAIIAWGTCASWGCVQAAR-----------------PNPTQATPID 180 + +E++K+ A +IA+GTCA +G V T P Sbjct: 63 KENMERVKKLRQRAKTVIAFGTCACYGGVSGLSILHSRDEILNGVYTNRQGTTTNVIPNQ 122 Query: 181 KV-------ITDKPIIK----VPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQ 229 + +IK + GCPP + I+ ++ R+PD+ + + Sbjct: 123 DIPDLLYRGYAVGDVIKVDYYITGCPPKEFFLRQILLPLI-EGRIPDLQK---------K 172 Query: 230 RIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMG--CKGPTTYNACSSTRWNDGVSFP 287 + +C R ++ + + CL G C G T+ C + Sbjct: 173 SVCSECDREMVLVKDWKIKRRYEGVPEEKTCLLGQGYICLGSVTFGRCHAL--------C 224 Query: 288 IQSGHGCLGCAEN 300 G C GC Sbjct: 225 THHGIPCHGCGGP 237 >UniRef50_C9R9W3 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Ammonifex degensii KC4 RepID=C9R9W3_AMMDK Length = 319 Score = 65.4 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 51/310 (16%), Positives = 95/310 (30%), Gaps = 82/310 (26%) Query: 46 LENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVF 105 + K +I W +C C + + + I+ + + A ++ Sbjct: 1 MAEKLKIASYW--AADCGGCDVAILDTHEKFLD--IVQAADIVFMPI--------AVDIK 48 Query: 106 EDIITQYNGKYI--LAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASW 163 E + + YI G E + L+R + ++A+G+CA Sbjct: 49 EKDVEAFPDGYIDVCFFHGAIRNSENEH--------MAKLLRR---KSKVLVAFGSCAMM 97 Query: 164 GCVQAARP-------------------NPTQATP-----IDKVITDKP-----------I 188 G V NP + P + + + P + Sbjct: 98 GGVPGLANFKDREGILSRVYFESPSTDNPDKVLPQTETQVREGVLTLPAFYEEVKTLADV 157 Query: 189 IKV----PGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYR-RAHFDA 243 + V PGCPP + + +V + P G + + + ++C R + + Sbjct: 158 VDVDYFMPGCPPASHQIVNVFQAIVAGNLPPK----GSIVGASTKSVCEECSRIKENKTI 213 Query: 244 GEFVQSWDDDAARKGYCLYKMG--CKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAEN- 300 F + + + CL + G C GP T C + + C GC Sbjct: 214 KRFYRVHEIIPDPER-CLLEQGIPCMGPATRGGC--------GAACPVANQPCRGCYGPL 264 Query: 301 -GFWDRGSFY 309 G D G+ Y Sbjct: 265 DGVIDHGAKY 274 >UniRef50_Q2LYD8 Nickel-dependent hydrogenase, small chain n=2 Tax=Bacteria RepID=Q2LYD8_SYNAS Length = 253 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 46/270 (17%), Positives = 81/270 (30%), Gaps = 87/270 (32%) Query: 50 PRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDII 109 + V + C C L IL I + +M+ E Sbjct: 6 MKPKVAFFDFACCEGCQLQVANLGEALLD--ILGAIDVVEFREVMS----------EKWD 53 Query: 110 TQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAA 169 Y + VEG+ + +++++ ++ +IA+G+CA+ G V Sbjct: 54 KNY---DVAIVEGSI-----------TDEHAEQRIRKIRDRSAVLIAYGSCATIGGVNGM 99 Query: 170 RPN-----PTQAT-----PIDKVITDKPI---------IKVPGCPP-IPDVMSAIITYMV 209 + + Q+ + +PI I GCP P+V+ Sbjct: 100 KNSFVLDEIRQSVYGKDYQLFDSKKTRPIHQVVKVDYFIN--GCPVYHPEVI-------- 149 Query: 210 TFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMG--CK 267 + G P + +C + C+Y G C Sbjct: 150 ---EVLKCALRGVPYAVPDNPVCSEC------------------KLNENVCMYDRGVACL 188 Query: 268 GPTTYNACSSTRWNDGVSFPIQSGHGCLGC 297 GP T C+ S+ I +G+ C GC Sbjct: 189 GPWTKAGCN--------SWCINNGNICYGC 210 >UniRef50_C6YT65 Predicted protein n=2 Tax=Francisella philomiragia RepID=C6YT65_9GAMM Length = 268 Score = 64.6 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 49/275 (17%), Positives = 84/275 (30%), Gaps = 88/275 (32%) Query: 49 KPRIPVVWIHGLECTCCTESFIRSAHPLAKDVIL--SLISLDYDDTLMAAAGTQAEEVFE 106 PR + C C + I A ++ ++ + + A AG Sbjct: 11 APRPKIAVHKFSSCDGCQLALIN----DAVSLLTLAEMVDIVHF----AEAGP------- 55 Query: 107 DIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCV 166 + ++ I +EG+ I +L++ A +IA G CA G + Sbjct: 56 --LDEFADVDIAFIEGSVNTHHD-----------IPRLQKIREKAKYVIAIGACAVAGGI 102 Query: 167 QAARPNPTQA----------------TPIDKVITDKPIIK--------VPGCPPIPDVMS 202 QA R N T A I + ++ IK + GCP + + Sbjct: 103 QALR-NYTNAAELLEWQKAVYPQDTDVIIKEDLSTAKAIKEYVNVDFEISGCPITTEQIL 161 Query: 203 AIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLY 262 I ++ F P+ + + C H + + D+ Sbjct: 162 KAIRQLL-FGVEPE------------KVVDPVCTSCKHASVTCVMVAKDEP--------- 199 Query: 263 KMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGC 297 C GP T + C + + G GC GC Sbjct: 200 ---CLGPVTADGCGAI--------CPKLGRGCYGC 223 >UniRef50_Q2IH66 Methyl-viologen-reducing hydrogenase, delta subunit n=4 Tax=Anaeromyxobacter RepID=Q2IH66_ANADE Length = 491 Score = 64.6 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 53/298 (17%), Positives = 82/298 (27%), Gaps = 82/298 (27%) Query: 49 KPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDI 108 KPR+ W C C E+ + A +L + + A + Sbjct: 168 KPRVAFYW--NASCGGCEEAVVDLGDGFAG--LLERVEVVLWPV--------ATDHKRAD 215 Query: 109 ITQYN--GKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCV 166 + G + V G L EQ E + A ++A+G CA G V Sbjct: 216 VEALPDGGIDLAFVNGAVRLDEQE-----------EWARLLRRKARTVVAFGACAHLGGV 264 Query: 167 QAA------------------------RPNPTQATPIDKVITDKPII------------- 189 P P D P++ Sbjct: 265 VGLGNLSEPEALLEAAYRAPPSVSNPEAPLPGGPVRADGATLSLPVLLPRTLTLADVVSV 324 Query: 190 --KVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGE-- 245 +PGCPP P V+ A + ++ D P + P + + C R+ Sbjct: 325 DYTIPGCPPSPAVVQAALDALL-GDAPPPRGAVLAP----DVSLCEDCPRKGSRPERIEL 379 Query: 246 -FVQSWDDDAARKGYCLYKMG--CKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAEN 300 ++ A C G C GP T C +++G C GC Sbjct: 380 HALRRLATSAVDPELCFLAQGLVCMGPATRQGCQP--------GCVEAGMPCRGCFGP 429 >UniRef50_Q0W6J6 Coenzyme F420-non-reducing hydrogenase (Methyl viologen-reducing hydrogenase), gamma subunit n=2 Tax=Euryarchaeota RepID=Q0W6J6_UNCMA Length = 305 Score = 63.8 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 47/280 (16%), Positives = 75/280 (26%), Gaps = 83/280 (29%) Query: 56 WIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGK 115 WI C C S + + L IL I Y LM + I G Sbjct: 10 WI--GACAGCEISVLDTHEALLP--ILDKIEFVYIPVLMDT---------KHIPKATVG- 55 Query: 116 YILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPT- 174 V G + + +L ++A G+CA +G T Sbjct: 56 ---IVSGCVRNSDN-----------LHELLEMRKNVDILVALGSCACFGGTPGMANLYTP 101 Query: 175 --------------------------------QATPIDKVITDKPIIKVPGCPPIPDVMS 202 A P+ + +I PGC P P +++ Sbjct: 102 EQLLEEVYVTTKSTKNEIQRHPYMDGLPTLLPDAKPLSDYVKVDAMI--PGCGPRPAMIA 159 Query: 203 AIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLY 262 I ++ + + D+C R + + + + CL+ Sbjct: 160 QAILSLLGAAEY----------KLSTKSVCDECAREKSERNLKKILRPFEGTIDEKKCLF 209 Query: 263 KMG--CKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAEN 300 + G C G T C + SG C GC Sbjct: 210 EQGYLCSGSATRAGCGAM--------CPSSGVACRGCFGP 241 >UniRef50_A5UM99 Coenzyme F420-reducing hydrogenase, gamma subunit, FrhG n=3 Tax=Methanobacteriaceae RepID=A5UM99_METS3 Length = 276 Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 40/199 (20%), Positives = 73/199 (36%), Gaps = 42/199 (21%) Query: 36 AGMAPKIAWALENK-----PRIPVVWIHGLECTCCTESFIRSAHPLAKDVIL-SLISLDY 89 + A E K + + +IH CT S + + DV+L ++ + Y Sbjct: 27 PEVEETAAPVAETKQETATNKPRIGYIHLSGCTGDGMSL--TENYDILDVVLTEMVDIVY 84 Query: 90 DDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAA 149 TL+ + + + +EG+ C+ E L A Sbjct: 85 GQTLV-------------DLWEMPEMDLCLIEGSV--------CLQDEHSVHELL-EARE 122 Query: 150 GASAIIAWGTCASWGCV-------QAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMS 202 ++ I A+G+CA GC Q A+P PI ++ + +PGCP P++++ Sbjct: 123 KSALICAFGSCALNGCFTTYARGGQQAQPKHESFLPISSLVKVD--VALPGCPVAPEMIA 180 Query: 203 AIITYMVTFDR---LPDVD 218 + + D P +D Sbjct: 181 KTVVALCNGDMEYLQPALD 199 >UniRef50_A0L609 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L609_MAGSM Length = 282 Score = 63.1 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 48/266 (18%), Positives = 76/266 (28%), Gaps = 87/266 (32%) Query: 59 GLECTCCTESFIRSAHPLAKDVILSLI-SLDYDDTLMAAAGTQAEEVFEDIITQYNGKYI 117 C + + V+L L + +MA++ Q + Sbjct: 19 FTGCAGDQLAILNDTT-----VLLGLAQRAEICSFIMASSQES---------DQEGRLDL 64 Query: 118 LAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAAR------- 170 VEG+ C R +EKL+ + A++A GTCA WG + A Sbjct: 65 AIVEGSI--------CSEQERTALEKLR---QRSDALMALGTCAVWGGLPAMNAKTIPIH 113 Query: 171 -------------PNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDV 217 P +A P+ + + V GCP D + ++T ++ R Sbjct: 114 TMKEQVYGDSTVFPGAREAEPLSRFVKVD--YAVTGCPIEIDEFAQVVTAILNGVRPVQT 171 Query: 218 DRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMG---CKGPTTYNA 274 D + + CL + C GP T Sbjct: 172 D----------------------------ASVCSECRIAENRCLVQAERRVCCGPITLAG 203 Query: 275 CSSTRWNDGVSFPIQSGHGCLGCAEN 300 C + IQ G C GC Sbjct: 204 CKAR--------CIQYGQPCYGCRGP 221 >UniRef50_B5YB68 NAD-reducing hydrogenase HoxS delta subunit n=2 Tax=Dictyoglomus RepID=B5YB68_DICT6 Length = 180 Score = 63.1 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 60/197 (30%), Gaps = 57/197 (28%) Query: 51 RIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIIT 110 ++ VW G C+ C SF+ ++I + ++ D+ Sbjct: 5 KVASVWCEG--CSGCHMSFLDMDE-RLVELINKGLEINATP-------------ITDLKI 48 Query: 111 QYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAAR 170 G I +EG E++K I+A G CA +G + R Sbjct: 49 PDEGTDIGIIEGAVATDHHE-----------EEVKMMRERCKIIVALGDCAVFGGIPTMR 97 Query: 171 P-----------------NPTQATP----IDKVITDKPIIK--------VPGCPPIPDVM 201 P I K + + VPGCPP D + Sbjct: 98 NYIPREELLERGYITTESTVDGKIPTSPEIGKHLPKTKAVNEVIKVDLYVPGCPPSADAI 157 Query: 202 SAIITYMVTFDRLPDVD 218 ++ ++ R+P ++ Sbjct: 158 YYVLKEVL-EGRIPKLE 173 >UniRef50_B6YTV9 Coenzyme F420 hydrogenase gamma subunit n=1 Tax=Thermococcus onnurineus NA1 RepID=B6YTV9_THEON Length = 225 Score = 62.3 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 64/172 (37%), Gaps = 36/172 (20%) Query: 49 KPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDI 108 ++ V+ + C C S IR+ +P D+I IS Sbjct: 1 MEKLKVLHVDVGGCEGCNVSIIRA-YPKLMDLIELDIS-----------------YLRKD 42 Query: 109 ITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCV-- 166 + + + + G + E +E+LK A ++A+G+CA++ + Sbjct: 43 ECKLDEYDVAIITGGACMNEP---------RILEELKEIREKAHTVVAFGSCATFSGILR 93 Query: 167 -----QAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDR 213 Q RP+ PI+ VI +PGCPP P ++ + + + D Sbjct: 94 FCRGGQEPRPDHRNFQPINSVIKVD--YSIPGCPPTPQMLQSFFKFYINGDE 143 >UniRef50_Q39QE2 F420-non-reducing hydrogenase subunit G n=5 Tax=Geobacter RepID=Q39QE2_GEOMG Length = 316 Score = 62.3 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 49/278 (17%), Positives = 83/278 (29%), Gaps = 75/278 (26%) Query: 51 RIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIIT 110 I + W+ +C+ C + + + +L +++ L + Sbjct: 5 PINLEWL--SDCSGCHVAIVDLHEKILA--VLESVTIQRCPVL-------------TDVK 47 Query: 111 QYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAAR 170 Y + V G I IIAWG+CA +G + A Sbjct: 48 DYPKAKLGLVSGAIRTEHDRHAAI-----------EMRKSCDLIIAWGSCAVYGGIAGAG 96 Query: 171 --------------PNPTQAT---PIDKVITDKP-------IIKV----PGCPPIPDVMS 202 N T AT P +V +P +I V PGC P P + Sbjct: 97 NVHSRQEIIDAVYIGNKTTATHAPPTKEVSALEPSVSPLDSVIDVDLYLPGCAPHPAFVF 156 Query: 203 AIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLY 262 + ++ P G+ + +C R+ + ++ + C Sbjct: 157 DALLALLEGRS---------PRTATGESVCARCRRKMEKTEVDRIRKNSEGVPDPDRCFL 207 Query: 263 KMG--CKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCA 298 G C G T + C +S +G C GCA Sbjct: 208 SQGYLCMGSVTLDRC--------MSPCPLNGIPCSGCA 237 >UniRef50_C6A155 NiFe hydrogenase I, subunit delta n=1 Tax=Thermococcus sibiricus MM 739 RepID=C6A155_THESM Length = 267 Score = 61.9 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 48/270 (17%), Positives = 79/270 (29%), Gaps = 84/270 (31%) Query: 49 KPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDI 108 ++ + + C C F D +L L+ A + + E Sbjct: 8 SEKVKIGFYALTSCYGCQLQF------AMMDEVLQLLD---------KANIECWFMLERG 52 Query: 109 ITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQA 168 + I +EG+ E+ +E +K+ A +IA G+CA G VQ+ Sbjct: 53 SDEDKEVDIAFIEGSVSTQEE-----------VELVKKIREKAKIVIAVGSCAVHGGVQS 101 Query: 169 -------------------ARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMV 209 + P A P++K I K+ GCPP + ++ Sbjct: 102 WDKDKEFNELWKTVYGDAHVKFEPKMAEPVEKYIKVD--YKLYGCPPEKKDFLYALGTLL 159 Query: 210 TFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMG--CK 267 D+D Y + +C R L + G C Sbjct: 160 IGSWPEDID--------YPVCV--ECRLRG-----------------NPCLLIEKGEPCL 192 Query: 268 GPTTYNACSSTRWNDGVSFPIQSGHGCLGC 297 GP T C + C+GC Sbjct: 193 GPLTVAGCDAR--------CPAFNIACIGC 214 >UniRef50_C5S9B0 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S9B0_CHRVI Length = 251 Score = 61.9 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 50/272 (18%), Positives = 82/272 (30%), Gaps = 92/272 (33%) Query: 50 PRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDII 109 + V + C C + + + + +L +I + M+ G + Sbjct: 1 MKPKVAFFEFTSCEGCQLTVLDTLQRHPE--LLEVIEIVQFREAMSERGEDYQ------- 51 Query: 110 TQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEK-LKRAAAGASAIIAWGTCASWGCVQA 168 I +EG+ C RP E ++ A ++A G CA G + A Sbjct: 52 -------IAFIEGS---------CT---RPSDEAKIREIREQAQIVVALGACAHLGGINA 92 Query: 169 ARP-NPTQ------------------ATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMV 209 R P + A P+ VI +I PGCP + +T+++ Sbjct: 93 IRNRMPLEQTREYVYGDKKDWFETYPARPLSAVIEVDAVI--PGCPIDRKEFATAVTHLL 150 Query: 210 TFDR--LPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMG-- 265 + +PD Y I D + C++ G Sbjct: 151 QGRKPAIPD----------YPLCI--------------------DCKLTENVCMFLRGQT 180 Query: 266 CKGPTTYNACSSTRWNDGVSFPIQSGHGCLGC 297 C GP T C + G GC GC Sbjct: 181 CLGPVTRAGCEAI--------CPAQGQGCEGC 204 >UniRef50_Q1NJF2 NADH ubiquinone oxidoreductase, 20 kDa subunit n=3 Tax=delta proteobacterium MLMS-1 RepID=Q1NJF2_9DELT Length = 366 Score = 61.9 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 52/335 (15%), Positives = 91/335 (27%), Gaps = 113/335 (33%) Query: 46 LENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVF 105 + KP++ + W C C + + + + + + L + L+ E + Sbjct: 1 MTAKPKLAIYW--AAACGGCEIAVVNLHEKILE--LDAAFELFFCPCLLDTKKGDIEALA 56 Query: 106 EDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGC 165 + I + G E + L+R + +IA+G+CA GC Sbjct: 57 DGEIA------VTLFNGAIRTSEN--------EEMAQLLRR---KSQTLIAFGSCAVEGC 99 Query: 166 VQAARP-------------------NPTQATP----------------IDKVITDKPIIK 190 + NP P D+V T ++ Sbjct: 100 IPGLANLYDRTAIFNTVYLDNPSLDNPAGILPQTRSQVPEGELRLPEFYDRVQTLADVVA 159 Query: 191 ----VPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYR-------RA 239 +PGCPP P + + ++ D P +G + H+ C R + Sbjct: 160 VDFFIPGCPPEPPRIWQAVESLLNGDPPPPDQVLGAGKLA---VCHE-CPRKIEEKKIKR 215 Query: 240 HFDAGEFVQSW--------------------------------DDDAARKGYCLYKMG-- 265 + + + D K CL + G Sbjct: 216 FYRNHQMISDHRVPPAALIAAASPTATRTPVREPAPSSQDAVPGDRFPDKESCLLEQGLL 275 Query: 266 CKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAEN 300 C G T C + Q G C GC Sbjct: 276 CMGIATREGCGAL--------CPQVGMPCTGCYGP 302 >UniRef50_A0LLU1 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LLU1_SYNFM Length = 184 Score = 61.5 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 42/202 (20%), Positives = 63/202 (31%), Gaps = 59/202 (29%) Query: 46 LENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVF 105 NK R+ W C C S + L ++ L+ + Y Sbjct: 5 ASNKVRLATAW--FGGCAGCHMSLLDLDERLID--VVGLVDIVYSPV------------- 47 Query: 106 EDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGC 165 DI G + VEG E + + +IA+G CA G Sbjct: 48 ADIKVFPEGVDVTLVEGACCNDEN-----------VHLAHEVRERSKIVIAFGDCAVTGN 96 Query: 166 VQAA-------------------RPNPTQATP------IDKVITDKPIIKV----PGCPP 196 V + +P PT I KV+ +I V PGCPP Sbjct: 97 VPSMRNRLDRDQMINSVYFEGPGKPPPTSVLGHFLPTLIPKVLPLHQVIPVDIFLPGCPP 156 Query: 197 IPDVMSAIITYMVTFDR--LPD 216 P+ + A I ++ + LP+ Sbjct: 157 DPERIWAAIVALLKGEPVLLPE 178 >UniRef50_C1DUT4 Putative [NiFe] hydrogenase, delta subunit n=1 Tax=Sulfurihydrogenibium azorense Az-Fu1 RepID=C1DUT4_SULAA Length = 249 Score = 61.5 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 50/264 (18%), Positives = 75/264 (28%), Gaps = 84/264 (31%) Query: 57 IHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFE-DIITQYNGK 115 C C SFI + LA+ L S+DY E + Y Sbjct: 6 FKFSSCDGCQLSFINLSGELAE---LENFSIDY--------------FLEGQSVNNYEYF 48 Query: 116 YILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARP--NP 173 VEG+ E+ IE++K + ++ G CA G VQ+ R N Sbjct: 49 DFSFVEGSVSTTEE-----------IERIKDIRERSKVLVGIGACAVSGGVQSIRNFRNI 97 Query: 174 TQATPID-----------KVITDKPIIK----VPGCPPIPDVMSAIITYMVTFDRLPDVD 218 + + ++K + GCP DV+ I ++ Sbjct: 98 DDIKTVYNTVDITKNVLENALPISQVVKVDFEIRGCPVSTDVVKDFINSILIGKSPH--- 154 Query: 219 RMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMG--CKGPTTYNACS 276 P+ +C RR CL + C GP T C+ Sbjct: 155 NYNYPVCL-------ECKRRG------------------NICLLVLNKPCLGPITTAGCN 189 Query: 277 STRWNDGVSFPIQSGHGCLGCAEN 300 + GC GC Sbjct: 190 AL--------CPSVNRGCYGCFGP 205 >UniRef50_A0LKF2 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LKF2_SYNFM Length = 300 Score = 61.5 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 49/276 (17%), Positives = 81/276 (29%), Gaps = 72/276 (26%) Query: 62 CTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVE 121 C C + + L IL IS+ + LM + + + + V Sbjct: 14 CAGCEVAILDQGELLLD--ILERISIVHAPILMDSKYRD--PAGDSDVVSIPRADVGIVS 69 Query: 122 GNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAAR----------- 170 G E G+ + R + L IA G+CA G + + Sbjct: 70 GGIRT-EHGLAVAKAVRESCDIL----------IANGSCACMGGIPSLANLVPPDVLKQG 118 Query: 171 -PNPTQATPIDKVITDKP-------IIK--------VPGCPPIPDVMSAIITYMVTFDRL 214 PN ++ + P I +PGCPP + +A + ++ Sbjct: 119 VPNLE--HGVEDGDFELPPLTARVAAINEVVPVDIFLPGCPPPTHLFAAALQAVL----- 171 Query: 215 PDVDRMGRPLMFYGQRIHDKCY-----RRAHFDAG-EFVQSWD--DDAARKGYCLYKMG- 265 GR + ++C R D G +F + + CL + G Sbjct: 172 -----EGRSFDLPEDTVCNECSKTKEKRTVFADNGLQFPEMLRPLETPPLDKRCLIEQGF 226 Query: 266 -CKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAEN 300 C G T + C + Q C GC Sbjct: 227 FCMGAATRSGCGAR--------CTQVNMPCRGCMGP 254 >UniRef50_Q2KJQ3 HoxY n=4 Tax=Proteobacteria RepID=Q2KJQ3_CHRVI Length = 180 Score = 61.1 bits (147), Expect = 7e-08, Method: Composition-based stats. Identities = 39/200 (19%), Positives = 72/200 (36%), Gaps = 58/200 (29%) Query: 46 LENKPRIPVV--WIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEE 103 + +P+I V W+ G C+ C SF+ L + ++ + + Y + Sbjct: 1 MSTQPKITVATAWLDG--CSGCHMSFLDLDERLIE--LVEHVEIVYSPLV---------- 46 Query: 104 VFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASW 163 D + +EG+ + + R F E+ R ++ G CA Sbjct: 47 ---DTKELPARVDVGILEGSISSEDD----LEKARLFRERCTRL-------VSLGDCAVT 92 Query: 164 GCVQAARPN---------------------PTQATP-----IDKVITDKPI-IKVPGCPP 196 G V A R + PT+ P + V + + + VPGCPP Sbjct: 93 GNVPAMRNHFKLADVFDRAYRENVTLQPQIPTRRVPALLTPVKPVHGEVKVDVFVPGCPP 152 Query: 197 IPDVMSAIITYMVTFDRLPD 216 D + +++ ++ R+PD Sbjct: 153 SADAIWHVLSELIA-GRMPD 171 >UniRef50_A8UU12 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UU12_9AQUI Length = 252 Score = 60.7 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 45/271 (16%), Positives = 73/271 (26%), Gaps = 85/271 (31%) Query: 49 KPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDI 108 K ++ V C C F+ + + Y Sbjct: 2 KNKLRVGVFKLSSCDGCQAIFLDLPS------LWEHLDFRY-------------WFLGKS 42 Query: 109 ITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQA 168 + I VEG+ E+ E +K A ++ G CA+ G +QA Sbjct: 43 ENKLEPIDIAFVEGSVSTQEE-----------AEFIKEVREKARLLVTIGACATSGGIQA 91 Query: 169 A------------RPNPTQATPIDKVITDKPIIKVP----GCPPIPDVMSAIITYMVTFD 212 P P + + +KV GCP P ++ + ++ Sbjct: 92 LRNFGSLEEFSSVYPKPEFIKVLKRSTPISEHVKVDYEIYGCPINPHILENFVKALL-HS 150 Query: 213 RLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCL---YKMGCKGP 269 R P++ PL C + R C+ Y++ C GP Sbjct: 151 RRPEIPSY--PL----------C---------------MECKLRGNICVMDAYRIPCLGP 183 Query: 270 TTYNACSSTRWNDGVSFPIQSGHGCLGCAEN 300 C + G GC GC Sbjct: 184 VVRAGCGAL--------CPSVGRGCYGCFGP 206 >UniRef50_B6YT72 Hydrogenase 4, component I or formate hydrogen lyase, subunit 7 n=3 Tax=cellular organisms RepID=B6YT72_THEON Length = 266 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 52/176 (29%), Gaps = 47/176 (26%) Query: 55 VWI---HGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQ 111 VW+ C C + P AE + ++ Sbjct: 7 VWVFHVDSGSCNGCDIEILDVLTPY----------------------YDAERLGIKLVPS 44 Query: 112 YNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCV----- 166 L V G PL Q + + + + ++A GTCAS G + Sbjct: 45 PRHADALLVSG--PLTRQTYYAVKA------AYEAMPPKPRIVVAIGTCASSGGIFYNGY 96 Query: 167 QAARPNP--------TQATPIDKV-ITDKPIIKVPGCPPIPDVMSAIITYMVTFDR 213 PNP T + KP + +PGCPP P+ + + ++ Sbjct: 97 PIYNPNPERGSDRLRTGGIEVLLAEYGKKPDMYIPGCPPSPEEILYGLAQLLGLKE 152 >UniRef50_O28898 Methylviologen-reducing hydrogenase, subunit gamma (VhuG) n=1 Tax=Archaeoglobus fulgidus RepID=O28898_ARCFU Length = 293 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 44/268 (16%), Positives = 83/268 (30%), Gaps = 81/268 (30%) Query: 61 ECTCCTESFIRSAHPLAKDVILSL-ISLDYD-DTLMAAAGTQAEEVFEDIITQYNGKYIL 118 C+ CT S + + + + + + TL G + ++ Sbjct: 11 GCSGCTMSML-----DLGERMNDFRMRVAWAAPTL----GDGKYDRIPEV-------DYA 54 Query: 119 AVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATP 178 +EG L E +E ++ + ++A+G CAS G + ++ Sbjct: 55 FIEGGIGLSEH-----------VEIVRELREKSETLVAFGICASCGGIMGLANLHSKEEI 103 Query: 179 IDKVITD-----------------KPIIK-------VPGCPPIPDVMSAIITYMVTFDRL 214 ++ V KP+ + GCPP P+ + + + Sbjct: 104 LEDVFGSAKSSVGDLRIPEMLEFVKPLDSVVEVDCYIGGCPPTPEQIYNAFKAIFEGE-- 161 Query: 215 PDVDRMGRPLMFYGQRIHDKCYRR---AHFDAGEFVQSWDDDAARKGYCLYKMG--CKGP 269 R + G+ + + C R + F++ D + C K G C GP Sbjct: 162 -------RGWITSGKSVCEFCSRNLSEKFGEVSRFLRVPDKE------CFLKQGILCFGP 208 Query: 270 TTYNACSSTRWNDGVSFPIQSGHGCLGC 297 T C ++ S C GC Sbjct: 209 ATQGDC--------MASCPNSNSPCRGC 228 >UniRef50_P22319 NAD-reducing hydrogenase hoxS subunit delta n=6 Tax=Bacteria RepID=HOXY_RALEH Length = 209 Score = 58.8 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 45/219 (20%), Positives = 62/219 (28%), Gaps = 58/219 (26%) Query: 36 AGMAPKIAWALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMA 95 A A + +I V I C CT SF+ L +L ++L Sbjct: 15 PATPMDPALAANREGKIKVATIGLCGCWGCTLSFLDMDERLLP--LLEKVTLL------- 65 Query: 96 AAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAII 155 DI I VEG E IE L+ +I Sbjct: 66 ------RSSLTDIKRIPERCAIGFVEGGVSSEEN-----------IETLEHFRENCDILI 108 Query: 156 AWGTCASWGCVQAAR--------------PNPT---QATPIDKVITDKPIIK-------- 190 + G CA WG V A R + T A + D P I Sbjct: 109 SVGACAVWGGVPAMRNVFELKDCLAEAYVNSATAVPGAKAVVPFHPDIPRITTKVYPCHE 168 Query: 191 -------VPGCPPIPDVMSAIITYMVTFDRLPDVDRMGR 222 +PGCPP D + ++ +V + R Sbjct: 169 VVKMDYFIPGCPPDGDAIFKVLDDLVNGRPFDLPSSINR 207 >UniRef50_Q2J4E9 NADH ubiquinone oxidoreductase, 20 kDa subunit n=29 Tax=Bacteria RepID=Q2J4E9_FRASC Length = 278 Score = 58.8 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 48/266 (18%), Positives = 77/266 (28%), Gaps = 83/266 (31%) Query: 55 VWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNG 114 VW C C + + + L A E +G Sbjct: 22 VW-KFASCDGCQLTLLDCED----------------ELLSLAGEIDVSYFLEASSATVDG 64 Query: 115 KYIL-AVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARP-- 171 Y L VEG+ + +E++ + A + ++ G CA+ G +QA R Sbjct: 65 PYDLSLVEGSVTTEQD-----------VERIHQVRAASRRLVTIGACATAGGIQALRNFA 113 Query: 172 ------NPTQATP--IDKVITDKPI-------IKVPGCPPIPDVMSAIITYMVTFDRLPD 216 ATP + + T PI ++ GCP P + +I+ + Sbjct: 114 DVGDFLAAVYATPAYVSTLATSTPISTHVRVDFELQGCPINPRQLLEVISAFL------- 166 Query: 217 VDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMG--CKGPTTYNA 274 RP + + +C RR + G C GP T+ Sbjct: 167 --ARRRPNIS-SSAVCTECKRRG-----------------TVCVMVAHGTPCLGPVTHAG 206 Query: 275 CSSTRWNDGVSFPIQSGHGCLGCAEN 300 C + GC GC Sbjct: 207 CGAI--------CPAYHRGCYGCFGP 224 >UniRef50_B1L3Q1 Coenzyme F420-reducing hydrogenase, gamma subunit n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L3Q1_KORCO Length = 258 Score = 58.8 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 46/273 (16%), Positives = 81/273 (29%), Gaps = 83/273 (30%) Query: 49 KPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDI 108 ++ + C + + +D++L L+SL E Sbjct: 1 MGKLRAAFYSLTGCQGEYLTIL-----GMEDILLDLLSLV-----------DIAEFKLAS 44 Query: 109 ITQYNGK-YILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQ 167 +Y+GK I VEG+ +E +KR + ++A G CA WG +Q Sbjct: 45 SKEYDGKVDIAFVEGSVSTERD-----------LEYIKRIRGNSKILVALGDCAVWGGIQ 93 Query: 168 AA----------------RPNPTQATPIDKVITDKPIIK--VPGCPPIPDVMSAIITYMV 209 A+ N K I++ + + GCP + ++ +V Sbjct: 94 ASTSGQDPKELMRSVYKTEKNLYGFLGEHKGISEVVPVDYEIQGCPIEGKEFARVLIDLV 153 Query: 210 TFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMG--CK 267 D P++ P+ +C R + + G C Sbjct: 154 R-DVKPELPDY--PVCI-------ECKVRE-----------------IPCLIVERGLPCL 186 Query: 268 GPTTYNACSSTRWNDGVSFPIQSGHGCLGCAEN 300 GP T C + C+GC Sbjct: 187 GPITVAGCDAR--------CPSYNTACIGCRGP 211 >UniRef50_C5A2R7 Coenzyme F420 hydrogenase subunit gamma (FrhG) n=1 Tax=Thermococcus gammatolerans EJ3 RepID=C5A2R7_THEGJ Length = 229 Score = 58.0 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 37/161 (22%), Positives = 61/161 (37%), Gaps = 38/161 (23%) Query: 49 KPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDI 108 ++ V+ + C C S IR+ L ++ L + D Sbjct: 4 MEKLKVLHVDFAGCEGCNVSIIRAYPKLMNEIDLDI------------------SYLRDG 45 Query: 109 ITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCV-- 166 QY + + G + E +E+LK A ++A+G+CAS G + Sbjct: 46 SCQYGEYDVALITGGACMNEP---------RILEELKEIREKARVVVAFGSCASLGGILR 96 Query: 167 -----QAARPNPTQATPIDKVITDKPI-IKVPGCPPIPDVM 201 Q RP+ PI+ VI P+ +PGCPP P ++ Sbjct: 97 FARGGQEPRPDHRNFQPINSVI---PVDYSIPGCPPTPQML 134 >UniRef50_Q59113 Hydrogenase small beta subunit n=2 Tax=Bacteria RepID=Q59113_9BACT Length = 179 Score = 58.0 bits (139), Expect = 6e-07, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 61/201 (30%), Gaps = 62/201 (30%) Query: 48 NKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFED 107 K ++ W+ C C SF+ L + + + + + A Sbjct: 2 AKAKVATFWLEA--CAGCHMSFLDLDERLID--LFQNVEILFSPIVDAKD---------- 47 Query: 108 IITQYNGKYILAVEGNPPLGEQGMFCISSG-RPFIEKLKRAAAGASAIIAWGTCASWGCV 166 P + G+ G +E K+ ++AWG CA +G + Sbjct: 48 ----------------IPNIDVGVLSGGLGNVEEVELAKKMRERCKYLVAWGDCAVFGGI 91 Query: 167 -------------------QAARPNPTQATPIDKV----ITDKPI-------IKVPGCPP 196 A+ NP P + + PI + VPGCPP Sbjct: 92 NCMRNFIPKDVVLREGYIETASTVNPQGIVPSEDIPELLPRALPIDYEVKVDVYVPGCPP 151 Query: 197 IPDVMSAIITYMVTFDRLPDV 217 D + + ++ R+P V Sbjct: 152 DADTIYYVFKELLA-GRVPKV 171 >UniRef50_C8WGI4 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WGI4_EGGLE Length = 261 Score = 57.7 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 38/271 (14%), Positives = 60/271 (22%), Gaps = 81/271 (29%) Query: 46 LENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVF 105 E VV + C C + L +L I L Y Sbjct: 9 QEKPSAPRVVVVGLASCFGCQLQITNAEAHLLD--VLGQIDLRY-------------WQL 53 Query: 106 EDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGC 165 + +EG E ++ A AIIA G CA+ Sbjct: 54 ASSDPMPEDFDVAIIEGAVTTEESEA-----------TVRSLREKAGAIIAVGACATTAG 102 Query: 166 VQAARPN-------------PTQATPIDKVITDKPIIK----VPGCPPIPDVMSAIITYM 208 + P+ + +I V CP ++ Sbjct: 103 IPGMAAEGFLERPGQVYDRVPSACGDMVAPRAVGAVIDVDFEVRACPIDSYDFIDVLQRA 162 Query: 209 VTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMG--C 266 + + + + C R + C + G C Sbjct: 163 LYGSN----------KTYPSRTMCGDCKRN------------------ETSCFFGKGQLC 194 Query: 267 KGPTTYNACSSTRWNDGVSFPIQSGHGCLGC 297 G T C + + G C GC Sbjct: 195 LGLVTTAGCGAK--------CVNLGRPCNGC 217 >UniRef50_B3TC56 Putative NADH ubiquinone oxidoreductase, 20 Kd subunit n=1 Tax=uncultured marine microorganism HF4000_APKG10H11 RepID=B3TC56_9ZZZZ Length = 182 Score = 57.3 bits (137), Expect = 9e-07, Method: Composition-based stats. Identities = 43/188 (22%), Positives = 62/188 (32%), Gaps = 44/188 (23%) Query: 42 IAWALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQA 101 + L R +W+ L CC+ P + A AG Sbjct: 33 LVKKLITWGRKNSLWVVHLTTGCCS--------PEFAAL--------------AGAGYDM 70 Query: 102 EEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGA---SAIIAWG 158 E ++ IL +EG E +KR +IA G Sbjct: 71 ERFGPLVMAAMRQCDILIIEGQVADK------------MAEVVKRTYDQMPDPKYVIAVG 118 Query: 159 TCASWGCVQAARPNPTQATPIDKVITDKPI-IKVPGCPPIPDVMSAIITYMVTFDRLPDV 217 CA G + + IDK+I P+ + VPGCPP P+ I + T + Sbjct: 119 NCAISGGFY--WDSYSMVMGIDKII---PVDVYVPGCPPRPEDWIDAIRLVQTRMDKEGL 173 Query: 218 DRMGRPLM 225 DR RPL+ Sbjct: 174 DRE-RPLL 180 >UniRef50_C0QP84 Putative [NiFe] hydrogenase, delta subunit n=1 Tax=Persephonella marina EX-H1 RepID=C0QP84_PERMH Length = 249 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 37/263 (14%), Positives = 70/263 (26%), Gaps = 81/263 (30%) Query: 57 IHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKY 116 C C SF + + + + Y + ++ Sbjct: 7 FKFASCDGCQISFFDISE--MLSHLEEKVRIKYF-------------IEGQDRNEFERFD 51 Query: 117 ILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQ--------- 167 I +EG+ EQ EK+K+ + ++ G C+S G +Q Sbjct: 52 ISFIEGSVSTPEQE-----------EKVKKIRDVSEYVVTIGACSSSGGIQSVRNFSDYK 100 Query: 168 ----AARPNPTQATPIDKVITDKPIIK----VPGCPPIPDVMSAIITYMVTFDRL--PDV 217 + P P +++ I + GCP + + +I ++ + P+ Sbjct: 101 DIVCSVYPKPEMIKSLERSRPVSDYIDVDFEIRGCPINKEALLEVIYSVILGKKPYNPE- 159 Query: 218 DRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSS 277 + +C R+ V + C G T C + Sbjct: 160 -----------YPVCMECKRKG----NPCVIIFGKP------------CLGSITSAGCGA 192 Query: 278 TRWNDGVSFPIQSGHGCLGCAEN 300 GC GC Sbjct: 193 V--------CPSYNRGCYGCFGP 207 >UniRef50_A1SU83 Hydrogen dehydrogenase n=23 Tax=Proteobacteria RepID=A1SU83_PSYIN Length = 433 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 60/201 (29%), Gaps = 56/201 (27%) Query: 46 LENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVF 105 ++ K ++ + C C SF+ L + +L + L Sbjct: 252 VKPKKKLKLATCSLAGCFGCHMSFLDMDERLIE--LLERVELSRSP-------------L 296 Query: 106 EDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGC 165 DI T + +EG E I L+ IIA G+CA G Sbjct: 297 NDIKTCAPDCDLGLIEGAVCNTEN-----------IAVLRHFRESCKIIIAVGSCAINGG 345 Query: 166 VQAARPNPTQATPIDK-VITDKPIIK----------------------------VPGCPP 196 V + R N +D+ + ++ +PGCPP Sbjct: 346 VPSLRNNIDVKDCLDEAYLNGIGLVNPKVPIDKELPYLLEKVYPIHEVIKVDYFLPGCPP 405 Query: 197 IPDVMSAIITYMVTFDRLPDV 217 D I+ ++ P++ Sbjct: 406 PADAFWKILNDLLDGKE-PEL 425 >UniRef50_B6YTX0 Hydrogenase 4, component I or formate hydrogen lyase, subunit 7 n=1 Tax=Thermococcus onnurineus NA1 RepID=B6YTX0_THEON Length = 273 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 58/192 (30%), Gaps = 54/192 (28%) Query: 46 LENKPRIPVVW---IHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAE 102 + KP++ +W ++ C C I P E Sbjct: 1 MSGKPKLRSIWVFHLNTGSCNGCDIEIIDVLTPF----------------------YDVE 38 Query: 103 EVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCAS 162 ++ + L V G PL Q + E +K I+A GTC Sbjct: 39 RFGIKLVGSPRHAHALLVSG--PLTRQAYYG------AKETIKAMPPEPRVIVAIGTCTC 90 Query: 163 WGCV----------QAARPNPTQ---ATPIDKVITDK--------PIIKVPGCPPIPDVM 201 G + + ++ I ++I D P+I +PGCPP P+ + Sbjct: 91 SGGIFYNGYPVYRRPESGREGSEYPRRGGIAELIADLRDEGEKVGPVIYIPGCPPRPEEI 150 Query: 202 SAIITYMVTFDR 213 I +V Sbjct: 151 IYGIAQLVGLVE 162 >UniRef50_Q24ST9 Formate hydrogenlyase subunit 7 n=2 Tax=Desulfitobacterium hafniense RepID=Q24ST9_DESHY Length = 155 Score = 56.1 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 51/173 (29%), Gaps = 49/173 (28%) Query: 43 AWALENKPRIPVVWIHGLECTCC---TESFIRSAHPLAKDVILSLISLDYDDTLMAAAGT 99 A + + + C C + + + + L ++ ++ G Sbjct: 24 AHLRSLRQSWHIRHLDCGSCNGCDWEMSALLNPIY-DLQRFGLDFVASPRHADILMCTGP 82 Query: 100 QAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGT 159 + + + + Y G IIA G Sbjct: 83 MSTHLIQAALATYEGT---------------------------------PNPKRIIAVGD 109 Query: 160 CASWGCVQ----AARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYM 208 CA G + AA +A P+D IK+PGCPP PD + ++ + Sbjct: 110 CALDGGMFKEAYAAHNGVGEALPVD--------IKIPGCPPSPDELLKVLLQL 154 >UniRef50_A3DKH2 NADH-quinone oxidoreductase, B subunit n=5 Tax=cellular organisms RepID=A3DKH2_STAMF Length = 165 Score = 55.7 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 51/163 (31%), Gaps = 43/163 (26%) Query: 52 IPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQ 111 ++ + C C + + P YD E + Sbjct: 31 PWLIHFNTGACNGCDIEVLAAITP------------LYDP----------ERFGIKLAPS 68 Query: 112 YNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGA---SAIIAWGTCASWGCVQA 168 IL V G + E+LKR ++A G CA G V Sbjct: 69 IRHADILVVTGAVT------------KKAAERLKRLYEQMPDPKFVVAVGACAISGGVF- 115 Query: 169 ARPNPTQATPIDKVITDKPI-IKVPGCPPIPDVMSAIITYMVT 210 + + DKVI P+ I VPGCPP P+ + I ++ Sbjct: 116 -HNSYSVLAGTDKVI---PVDIYVPGCPPRPEAILDGIVKLLK 154 >UniRef50_B5YFX1 F420-non-reducing hydrogenase subunit G n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YFX1_THEYD Length = 318 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 49/298 (16%), Positives = 99/298 (33%), Gaps = 81/298 (27%) Query: 51 RIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIIT 110 + + + C C + + + + DV L++ + + T+ A+ ++D+ Sbjct: 3 KPKLAYYLAGGCGGCDIAVVDISE-MLVDVALAVDIVFWAPTV-------ADVKYKDLEA 54 Query: 111 QYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAA-GASAIIAWGTCASWGCVQA- 168 + G+ + G+F + E + + +IA+G CA+ G ++ Sbjct: 55 MPD--------GSI---DVGLFTGNVRNSEHEHIAKVLRNKCKVLIAFGICAACGGIKGL 103 Query: 169 ------------------ARPNPTQATPIDKVITD----------------KPIIK---- 190 + NP + P + D ++K Sbjct: 104 VNLHTTDELLDKAYVNTFSTDNPNKELPQTTCVVDGKYELTLPTLMYARPLDEVVKVDYY 163 Query: 191 VPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFD------AG 244 + GCPP + + A T +++ +LP + G+ + + C R A Sbjct: 164 IGGCPPHYEHVKAAFTALLS-GQLPPPGSW----ITMGKAVCEVCDRNPVLKGKPKKLAT 218 Query: 245 EFVQSWDDDAARKGYCLYKMG--CKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAEN 300 E ++ D + G CL + G C GP T C + + C GC Sbjct: 219 EVKRTIDGAPSEDG-CLLEEGYLCLGPVTQGDCGAK--------CPAANIPCRGCGGP 267 >UniRef50_Q21RP8 NADH ubiquinone oxidoreductase, 20 kDa subunit n=4 Tax=Proteobacteria RepID=Q21RP8_RHOFD Length = 188 Score = 55.4 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 38/207 (18%), Positives = 66/207 (31%), Gaps = 59/207 (28%) Query: 42 IAWALENKPR-IPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQ 100 +A A+ PR + V + C C SF+ + + LI + Sbjct: 2 MAPAMSPTPRKLKVATVSLAGCFGCHMSFL-----DIDERLFDLIE---H--------IE 45 Query: 101 AEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTC 160 + I Q I +EG E ++ L+ A ++A G C Sbjct: 46 FDRSPLTDIKQVGACDIGLIEGGLCNAEN-----------VQVLREFRAHCKTLVAVGAC 94 Query: 161 ASWGCVQAARP------------------NPTQATP--------IDKVITDKPII----K 190 A G + A R + A P ++KV + ++ Sbjct: 95 AITGGLPAQRNHLDLGQLLTEVYRSRPGLSAGGAIPNDPELPLLLNKVHPIREVVHVDYS 154 Query: 191 VPGCPPIPDVMSAIITYMVTFDRLPDV 217 +PGCPP D ++ ++ R P + Sbjct: 155 LPGCPPSADAFWHFLSDLMA-GRTPHL 180 >UniRef50_B8G3U7 NADH ubiquinone oxidoreductase 20 kDa subunit n=6 Tax=Bacteria RepID=B8G3U7_CHLAD Length = 177 Score = 55.0 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 67/198 (33%), Gaps = 59/198 (29%) Query: 51 RIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIIT 110 RI +W+ C+ C S + D+ LI L AA D+ Sbjct: 5 RIATIWL--GGCSGCHMSLL--------DLDEWLIEL-------AAQADLVYSPIADVKR 47 Query: 111 QYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAAR 170 + + +EG E +E A + I+++G CA G V A R Sbjct: 48 FPSHVDVTLIEGAIANNEH-----------LELAHIARRNSKIIVSFGDCAVSGNVTALR 96 Query: 171 P-----------------NPTQATP---------IDKVITDKPIIKV----PGCPPIPDV 200 +P P +DKV+ +I V GCPP Sbjct: 97 NPLGSPEQLLQQVYIEHSDPRGKIPHEPGIVPVLLDKVMPVHQVIPVDYYLSGCPPSAPR 156 Query: 201 MSAIITYMVTFDRLPDVD 218 + A++ ++T + P+VD Sbjct: 157 IRALLEALLTGRK-PEVD 173 >UniRef50_B5EBV9 NADH ubiquinone oxidoreductase 20 kDa subunit n=5 Tax=Geobacter RepID=B5EBV9_GEOBB Length = 251 Score = 54.6 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 76/274 (27%), Gaps = 85/274 (31%) Query: 49 KPRIPVVWIHGLECTCCTESFIRSAHPLAKDVI-LSLISLDYDDTLMAAAGTQAEEVFED 107 R + C+ C + + LA+ L+S MA + Sbjct: 1 MNRPRLAIAGLTACSGCQLTLLNCEDELAQVAARFDLVSFP-----MAES---------- 45 Query: 108 IITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQ 167 + VEG + L R + ++A GTCA +G V Sbjct: 46 -VEGGAPFDAAIVEGAVSTPGD-----------LANLFRLRNSSRLLVALGTCAIFGGVA 93 Query: 168 AARPNPT------QATPID-----KVITDKPIIK-------VPGCPPIPDVMSAIITYMV 209 A + A D + P+ + GCPP + A++ ++ Sbjct: 94 AMNNGVSTREELVAAVYGDGEKTVESFAPAPLTNFVSVDFSITGCPPEKQEVMALLCALL 153 Query: 210 TFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLY---KMGC 266 LP + P+ C + +R+ CL K C Sbjct: 154 N-GTLPPLATY--PV----------CT---------------ECRSRENLCLLLERKELC 185 Query: 267 KGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAEN 300 GP C++ +G C GC Sbjct: 186 LGPIIQGGCNAR--------CPATGIVCEGCRGP 211 >UniRef50_B6YU80 Cytosolic NiFe-hydrogenase, delta subunit n=9 Tax=Thermococcaceae RepID=B6YU80_THEON Length = 265 Score = 54.6 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 38/213 (17%), Positives = 65/213 (30%), Gaps = 65/213 (30%) Query: 104 VFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASW 163 + + ++ I +EG+ E+ +E +K+ A ++A G CA+ Sbjct: 42 MLDRDSSEDEPVDIAFIEGSVSTEEE-----------VELVKKIRENAKIVVAVGACATQ 90 Query: 164 GCVQAARPNPT-----QATPIDKVITDKPIIKVP------------GCPPIPDVMSAIIT 206 G VQ+ + + +A D + +P + P GCPP I Sbjct: 91 GGVQSWEKDKSLEELWKAVYGDGKVKFEPKMAEPLENYIKVDYRIYGCPPEKKDFIYAIG 150 Query: 207 YMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMG- 265 + D+D P+ C + L + G Sbjct: 151 TFLVGSWPEDIDY---PV----------C--------------LECRLKGNTCILIEKGE 183 Query: 266 -CKGPTTYNACSSTRWNDGVSFPIQSGHGCLGC 297 C GP T C + G C+GC Sbjct: 184 PCLGPITRAGCDAR--------CPSYGIACIGC 208 >UniRef50_Q0W6T1 [NiFe]-hydrogenase, small subunit (EchC-like) n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W6T1_UNCMA Length = 135 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 56/165 (33%), Gaps = 35/165 (21%) Query: 49 KPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDI 108 K V H C C + S P E + + Sbjct: 5 KRSPWVYHAHAGGCVGCDIELVASMGPR----------------------YDLERLGVRL 42 Query: 109 ITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQA 168 + +L V G PL +PF+E++ +IA G C V Sbjct: 43 VPSPRYADVLLVTGPVPLHT---------KPFLERVYAQTPEPKRVIAIGACGCSCGVFI 93 Query: 169 ARPNPTQATPIDKVITDKPI-IKVPGCPPIPDVMSAIITYMVTFD 212 N + A P+DK+I P+ +K+PGCPP P+ + I ++ Sbjct: 94 DDENYSIAGPVDKII---PVDVKIPGCPPKPEAIMEGIIKVLRMK 135 >UniRef50_B5EQ53 NADH ubiquinone oxidoreductase 20 kDa subunit n=10 Tax=Proteobacteria RepID=B5EQ53_ACIF5 Length = 265 Score = 53.4 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 56/336 (16%), Positives = 103/336 (30%), Gaps = 91/336 (27%) Query: 48 NKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFED 107 + + C C +F+ L + + L+ + + A AG + D Sbjct: 2 AAAKPRLAVHKFSSCDGCQLAFLNLGEDLLR--LAELVEIVHF----AEAGPVDPDAVVD 55 Query: 108 IITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQ 167 I VEG+ E E++++ + +I+ G CA+ G +Q Sbjct: 56 IA---------FVEGSVSTPEDE-----------ERIQKIRKNSRHLISIGACATAGGLQ 95 Query: 168 AARP---NPT-------QATPIDKVITDKPIIK-VP------GCPPIPDVMSAIITYMVT 210 A R P Q I + T PI VP GCP + + ++ Sbjct: 96 ALRNLADGPGWIAEIYAQPEHIHSLATSTPIAAHVPVDLELWGCPVNGRQVLGAVRALL- 154 Query: 211 FDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMG--CKG 268 F+ +P +++ ++ +C R + L G C G Sbjct: 155 FEVVPALEK---------DKVCLECKR-----------------HQAVCVLVAKGLPCMG 188 Query: 269 PTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYSRVVDIPQMGTHSTADTVG 328 P T C + + G C C + + +G +G Sbjct: 189 PVTLTGCGAL--------CPRFGRDCYACYGP---------AENPNATALGRRLEG--LG 229 Query: 329 LTALGVVAAAVGVHAVASAVDQRRRHNQQPTETEHQ 364 L V + +++ A A + RH ++ Sbjct: 230 LVPEAVARRFLFINSGAPAFAEAGRHWREQVHDPKP 265 >UniRef50_UPI000190EB16 hydrogenase-1 small chain n=1 Tax=Salmonella enterica subsp. enterica serovar Typhi str. E01-6750 RepID=UPI000190EB16 Length = 61 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 31/33 (93%), Positives = 33/33 (100%) Query: 1 MNNEETFYQAMRRQGVTRRSFLKYCSLAATSLG 33 MNNEETFYQAMRR+GVTRRSFLK+CSLAATSLG Sbjct: 29 MNNEETFYQAMRRKGVTRRSFLKFCSLAATSLG 61 >UniRef50_A9KS72 NADH ubiquinone oxidoreductase 20 kDa subunit n=3 Tax=cellular organisms RepID=A9KS72_CLOPH Length = 144 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 50/155 (32%), Gaps = 37/155 (23%) Query: 49 KPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDI 108 K ++ G C C + PL +I+ Sbjct: 5 KKSPWIIHYDGSSCNGCDIEVLACLTPLYDVERFGIIN---------------------- 42 Query: 109 ITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQA 168 IL + G+ P ++++ A ++A G CA+ G + A Sbjct: 43 TGNPKHADILLITGSVNEQN---------IPVVKQIYEQMAEPKIVVAVGICANSGGIFA 93 Query: 169 ARPNPTQATPIDKVITDKPI-IKVPGCPPIPDVMS 202 N + +DKV+ P+ + VPGC P+ + Sbjct: 94 ECYNVSG--GVDKVL---PVDVYVPGCAARPEAII 123 >UniRef50_C7JEU9 NADH-ubiquinone oxidoreductase 20 kDa subunit n=8 Tax=Acetobacter pasteurianus RepID=C7JEU9_ACEP3 Length = 165 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 56/170 (32%), Gaps = 37/170 (21%) Query: 49 KPRIPVVWIH--GLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFE 106 PR P++ H C C L +L Y M AG Sbjct: 23 GPRWPLLLFHVDTGGCGGCGM---------------ELQALRYAPYDMEGAGFG------ 61 Query: 107 DIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCV 166 +T +L + G P +E +A +IA G+CA G + Sbjct: 62 -FVTSPRNADVLLITGALTRAMA---------PVLEAAWQAMPTPKGLIAVGSCALDGGM 111 Query: 167 QAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPD 216 N T +++ ++ +K+PGCPP P + + + +P Sbjct: 112 F--PENYTVLGGLERRVSID--LKIPGCPPAPQDVLNGLCSLFGKQAVPP 157 >UniRef50_C5U7Y6 NADH ubiquinone oxidoreductase 20 kDa subunit n=2 Tax=Euryarchaeota RepID=C5U7Y6_9EURY Length = 154 Score = 52.3 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 56/169 (33%), Gaps = 39/169 (23%) Query: 44 WALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEE 103 + K I V+ ++ C C + + ++ S YD AE+ Sbjct: 10 KKISRKKCIHVMLVYTGGCNGCDI-----------EAVNAVFSPYYD----------AEQ 48 Query: 104 VFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASW 163 + IL V G F S R EK+ A++A G+CA Sbjct: 49 YNVFLTFNPRETDILIVSGCVT-----KFVKESLRKIYEKI----PEPKAVVAIGSCALT 99 Query: 164 GCVQAARPNPTQATPIDKVITD-----KPI-IKVPGCPPIPDVMSAIIT 206 G V N + P+ +KVPGC P P+ + + I Sbjct: 100 GGV---YKNIGGDLGTSDFVAGPVENIIPVDVKVPGCAPRPEDIISGIV 145 >UniRef50_A7GWN3 HsdS n=9 Tax=Proteobacteria RepID=A7GWN3_CAMC5 Length = 274 Score = 51.5 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 53/175 (30%), Gaps = 37/175 (21%) Query: 37 GMAPKIAWALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAA 96 + K+ K V I C C + P +D Sbjct: 15 DLTAKLEHLKNIKRSFSVYRIDCGSCNGCEIEIFAAITP------------MWDP----- 57 Query: 97 AGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIA 156 E ++ IL G P+ Q + + AA ++A Sbjct: 58 -----ERFGFKLVANPRHADILICSG--PVTRQMYYPLLRAY-------EAAPDPKIVVA 103 Query: 157 WGTCASWGCVQAARPNPTQATPIDKVITDKPI-IKVPGCPPIPDVMSAIITYMVT 210 +G C S G + + IDK+I P+ + +PGCPP P + + + Sbjct: 104 FGACGSSGGIFHDAYSVWG--GIDKII---PVDVYIPGCPPHPASVIYGLGMALG 153 >UniRef50_A6LXQ4 NADH-quinone oxidoreductase subunit B n=4 Tax=Bacteria RepID=NUOB_CLOB8 Length = 169 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 43/118 (36%), Gaps = 18/118 (15%) Query: 93 LMAAAGTQAEEV---FEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAA 149 +MAA G + + +E ++ V G P ++K+ Sbjct: 50 MMAAGGARYDIARFGYEVFRASPRQADLMIVAGTITEKMA---------PIVKKIYDQMP 100 Query: 150 GASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI-IKVPGCPPIPDVMSAIIT 206 +IA G+CA+ G N D + P+ + +PGCPP P+ + + Sbjct: 101 EPKWVIAMGSCATSGGPFVDSYNVV--PGADTFL---PVDVYIPGCPPRPEALIHGLL 153 >UniRef50_Q3M430 NADH ubiquinone oxidoreductase, 20 kDa subunit n=46 Tax=Bacteria RepID=Q3M430_ANAVT Length = 181 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 65/198 (32%), Gaps = 61/198 (30%) Query: 51 RIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIIT 110 ++ VW+ C+ C SF+ + ++ L AA F DI Sbjct: 5 KLATVWL--GGCSGCHMSFL-----DLDEWLIDL----------AAQADVVFSPFADIKE 47 Query: 111 QYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAAR 170 G ++ VEG E + +K + +I++G CA G V A R Sbjct: 48 YPEGVDVVLVEGAIANEEH-----------LTTIKIVRERSQILISFGDCAVTGNVTALR 96 Query: 171 PNPTQAT------------------------------PIDKVITDKPI-IKVPGCPPIPD 199 NP + + V + P+ I +PGCPP Sbjct: 97 -NPLGSAEPVLQRCYIQAVDINPQIPQEPGIVPPLLDRVTPVHSIVPVDIYLPGCPPSAT 155 Query: 200 VMSAIITYMVTFDRLPDV 217 + A + ++ + P + Sbjct: 156 RIRAALEPLLQ-GKTPHL 172 >UniRef50_Q58758 Uncharacterized protein MJ1363 n=17 Tax=Euryarchaeota RepID=Y1363_METJA Length = 151 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 56/174 (32%), Gaps = 45/174 (25%) Query: 42 IAWALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQA 101 + + K I V+ ++ C C +V+ ++ S YD A Sbjct: 4 MIKKIARKKCIHVMLVYTGGCNACDI-----------EVVNAIFSPFYD----------A 42 Query: 102 EEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGA---SAIIAWG 158 E+ + IL V G + E L++ A++A G Sbjct: 43 EQYNVFLTFNPREADILVVTGCVT------------KVVAESLRKIYEKIPEPKAVVAVG 90 Query: 159 TCASWGCVQAARPNPTQATPIDKVITD-----KPI-IKVPGCPPIPDVMSAIIT 206 CA G V N + P+ +KVPGC P P+ + A I Sbjct: 91 ACALMGGV---YKNIGGDLGTSDFVAGPVENIIPVDVKVPGCAPRPEDIIAGIV 141 >UniRef50_Q21TB3 NADH ubiquinone oxidoreductase, 20 kDa subunit n=2 Tax=Proteobacteria RepID=Q21TB3_RHOFD Length = 254 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 34/107 (31%), Gaps = 13/107 (12%) Query: 107 DIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCV 166 DI+ L + G ++ A +IA G CA G V Sbjct: 161 DIVASPRHADALVLSGPITRNMAQA---------LQICWDAIPEPKLVIAVGACAISGGV 211 Query: 167 QAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDR 213 A + A + KP + VPGCP P + I ++ Sbjct: 212 FA----DSDALDRQFLDNFKPALYVPGCPAHPLTFISGIMDLLGIAP 254 >UniRef50_B5YKI3 NADH-quinone oxidoreductase subunit B 1 n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=NUOB1_THEYD Length = 199 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 7/69 (10%) Query: 139 PFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI-IKVPGCPPI 197 P I L +IA G+CA G + + +D+++ P+ + +PGCPP Sbjct: 96 PVIVNLYHQMPEPRYVIAMGSCACSGGI---FNTYSTVQGVDEIL---PVDVYIPGCPPR 149 Query: 198 PDVMSAIIT 206 P+ + + Sbjct: 150 PEALIEGLL 158 >UniRef50_C0GED7 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GED7_9FIRM Length = 254 Score = 48.4 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 48/272 (17%), Positives = 76/272 (27%), Gaps = 83/272 (30%) Query: 49 KPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDI 108 V C+ C F+ P+ D++ + + +MA Sbjct: 2 AELPKVAIFKFASCSGCQLEFLN-LEPVLLDLLGLVDLTHF---VMAR------------ 45 Query: 109 ITQYNGKY-ILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQ 167 G Y I VEG+ E IE+LK+A ++A G CA G +Q Sbjct: 46 RENKPGPYDIGFVEGSIVNPED-----------IERLKQARRDCGLLVAIGACACHGGLQ 94 Query: 168 AARPN-------------PTQATPIDKVITDKPI---IKVPGCPPIPDVMSAIITYMVTF 211 + P + + + D+ + K+ GCP + + + Sbjct: 95 SLNNGTPQREVEARVYEHPAEVSSLKSYPVDEYVDIDAKLSGCPINKNELVEFVK-SALL 153 Query: 212 DRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCL---YKMGCKG 268 P + RP H C + + CL K C G Sbjct: 154 GVTPRI----RP--------HCVCV---------------ECKLSENVCLTVSEKTPCMG 186 Query: 269 PTTYNACSSTRWNDGVSFPIQSGHGCLGCAEN 300 P T C + C GC Sbjct: 187 PVTRAGCGAL--------CPARSTACTGCHGP 210 >UniRef50_B8HLE8 NAD(P)H-quinone oxidoreductase subunit K 2 n=94 Tax=cellular organisms RepID=NDHK2_CYAP4 Length = 259 Score = 48.0 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Query: 152 SAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI-IKVPGCPPIPDVMSAIIT 206 +IA G C G + +A +PT DK++ PI + +PGCPP P+ + +T Sbjct: 109 KYVIAMGACMITGGMFSAD-SPTALRGADKLL---PIDVYIPGCPPRPEAILDAVT 160 >UniRef50_A6UVJ5 NADH ubiquinone oxidoreductase 20 kDa subunit n=2 Tax=cellular organisms RepID=A6UVJ5_META3 Length = 246 Score = 48.0 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 6/54 (11%) Query: 146 RAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI-IKVPGCPPIP 198 A +IA GTCA G + R N +DK++ P+ + +PGCPP P Sbjct: 186 DATPSPKFVIAVGTCAISGGIF--RENEEVVGGVDKIL---PVDLYIPGCPPHP 234 >UniRef50_B1L7S0 F420H2 dehydrogenase subunit n=3 Tax=Archaea RepID=B1L7S0_KORCO Length = 174 Score = 47.6 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 40/128 (31%), Gaps = 16/128 (12%) Query: 94 MAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASA 153 AA AE + +L +EG + Sbjct: 60 SAAPKYDAERLGFLPFIGIRQCNVLFIEGTLSKKMAEAAI---------WVYEQMPEPKF 110 Query: 154 IIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI-IKVPGCPPIPDVMSAIITYMVTFD 212 +I G CA G + N + I P+ + +PGCPP P+ ++ I + Sbjct: 111 VIGMGACAIDGGIFWNSYNIVRPMDI------LPVNVFIPGCPPRPEAVAQAIIMLQRKI 164 Query: 213 RLPDVDRM 220 R ++ + Sbjct: 165 RKGELVKY 172 >UniRef50_A9A345 NADH-quinone oxidoreductase, B subunit n=1 Tax=Nitrosopumilus maritimus SCM1 RepID=A9A345_NITMS Length = 174 Score = 47.6 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 49/154 (31%), Gaps = 36/154 (23%) Query: 50 PRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDII 109 RI +W +E CC+ F ++ P +I + Sbjct: 37 GRIWSLWPVHIETACCSVEFGAASSPRYDVERFGII---------------------EAF 75 Query: 110 TQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAA 169 ++ V+G P + + +IA G CA G + Sbjct: 76 GSLRQCDLVVVQGTITRKMA---------PRLRLVYDQMPEPKYVIAMGACAITGGLYFD 126 Query: 170 RPNPTQATPIDKVITDKPI-IKVPGCPPIPDVMS 202 N ID VI P+ + VPGCPP P+ + Sbjct: 127 SYNV--LPGIDGVI---PVDVYVPGCPPRPETLI 155 >UniRef50_C5A2Q7 Formate hydrogenlyase II subunit H (Mhy2H) n=3 Tax=Thermococcus RepID=C5A2Q7_THEGJ Length = 283 Score = 47.6 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 30/180 (16%), Positives = 50/180 (27%), Gaps = 55/180 (30%) Query: 57 IHGLECTCCTESFIRSAHP--LAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNG 114 + C C P A+ + + L + MAA G Sbjct: 11 LDTGACNGCEIELFDILTPYYDAERLGVRLAASPRHAHAMAATG---------------- 54 Query: 115 KYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQ------- 167 PL Q + E +K I+A GTCA G + Sbjct: 55 ----------PLTRQAYYA------AKEAIKAMPPKPRIIVAIGTCACSGGIFYNGYPIY 98 Query: 168 ---------AARPNPTQATPIDKVITDK-----PIIKVPGCPPIPDVMSAIITYMVTFDR 213 P + + + D+ P++ +PGCPP P+ + + + Sbjct: 99 RRPESGREGQEYPRRGGIFELVQDLRDEGEYVGPVVYIPGCPPRPEEILYGVALALGLVE 158 >UniRef50_D1Z1F3 Coenzyme F420 hydrogenase subunit gamma n=1 Tax=Methanocella paludicola SANAE RepID=D1Z1F3_METPS Length = 235 Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 57/157 (36%), Gaps = 37/157 (23%) Query: 51 RIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIIT 110 + ++H C+ C SF+ + L ++ ++ ++Y + +D Sbjct: 3 KPKFAYVHLAACSGCEISFLDNFERLLD--MMDMVDIEY------------MTLIKDATD 48 Query: 111 QYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAAR 170 I+ V+G +E LK+A A+ ++AWG C+S A Sbjct: 49 IPK-VDIVFVDGA---------ACLQSEDAVETLKKARENATYLVAWGGCSS----TATI 94 Query: 171 PNPT--QATPIDKVITDKPI-------IKVPGCPPIP 198 N + P + + PI VPG PP P Sbjct: 95 NNFSRGGQLPQPQHESFPPIKRLVKVDASVPGSPPGP 131 >UniRef50_B2A054 NADH ubiquinone oxidoreductase 20 kDa subunit n=54 Tax=cellular organisms RepID=B2A054_OPITP Length = 338 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 45/158 (28%), Gaps = 37/158 (23%) Query: 46 LENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVF 105 L + ++ C C + PL L +I+ Sbjct: 2 LGLRKSPWIIHYDASSCNGCDIETLACLTPLYDVERLGVIN------------------- 42 Query: 106 EDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGC 165 I V G + I + ++A G CAS G Sbjct: 43 ---TGNPKHADIFLVTGAVNEQS---------KEVIRNIYHQLPEPKVVVAIGVCASSGG 90 Query: 166 VQAARPNPTQATPIDKVITDKPI-IKVPGCPPIPDVMS 202 + N A +D+VI P+ + VPGC P+ + Sbjct: 91 IFRDCYNI--AGGVDRVI---PVDVYVPGCAARPEAII 123 >UniRef50_A9GUX6 NADH-quinone oxidoreductase subunit B 1 n=10 Tax=Bacteria RepID=NUOB1_SORC5 Length = 194 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 5/57 (8%) Query: 152 SAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYM 208 ++A+GTCAS G N T IDKVI + VPGCPP P+ + + + Sbjct: 105 KWVLAFGTCASCGGF---YDNYTTVAGIDKVIPCD--VYVPGCPPRPEAVLDGLMLL 156 >UniRef50_C7NUN9 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Halorhabdus utahensis DSM 12940 RepID=C7NUN9_HALUD Length = 183 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 48/165 (29%), Gaps = 37/165 (22%) Query: 46 LENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVF 105 ++ ++ C C + + P E Sbjct: 7 WARNRSPWILHMNCGSCNGCDIETLDALMPR----------------------YDVERFG 44 Query: 106 EDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGC 165 +L G P +E++ +IA G+CA+ G Sbjct: 45 IQQKDTPRHADVLVATGPVTKQMA---------PRLERIYEQMPEPKLVIAAGSCAATGG 95 Query: 166 VQAARPNPTQATPIDKVITDKPI-IKVPGCPPIPDVMSAIITYMV 209 V N + ID VI P+ + VPGCP P+ + I ++ Sbjct: 96 VFQDCYNCHE--GIDDVI---PVDMYVPGCPISPETLIDGIVALL 135 >UniRef50_C8QXK1 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QXK1_9DELT Length = 178 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 37/200 (18%), Positives = 63/200 (31%), Gaps = 56/200 (28%) Query: 46 LENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVF 105 + + R+ VW+ G C+ C SF+ + + L Y + Sbjct: 1 MSGRLRVATVWLDG--CSGCHMSFLDMD--ELLLELAPRLELAYSPLV------------ 44 Query: 106 EDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGC 165 D + + +EG E K + A + ++A G CA G Sbjct: 45 -DRKEFPDRVDLALLEGAVSTPEDEA-----------KARLVRAHSRLVVALGDCACQGN 92 Query: 166 VQAARP-----------------NPTQATP-------IDKVITDKPIIKV----PGCPPI 197 V A R P A P + + +I V PGCPP Sbjct: 93 VPALRNRLDNEQLLDLVYRQQADGPAAAPPDRNVPPLLTHSLPLHRVIAVDLFLPGCPPP 152 Query: 198 PDVMSAIITYMVTFDRLPDV 217 P + +T ++ + L ++ Sbjct: 153 PAAIVRALTAVLDGETLSEL 172 >UniRef50_P80510 Cytochrome c3 hydrogenase small chain (Fragment) n=52 Tax=Bacteria RepID=HC3S_THIFE Length = 40 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 1/37 (2%) Query: 53 PVVWIHGLECTCCTESFIRSAHPLAKDVILSL-ISLD 88 V+W+ G + T SF+ + P A D++ I++ Sbjct: 2 NVLWLQGGAXSGNTMSFLNAEEPSAXDLVTDFGINVL 38 >UniRef50_Q1IPE7 NADH-quinone oxidoreductase subunit B 1 n=10 Tax=Bacteria RepID=NUOB1_ACIBL Length = 213 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 7/71 (9%) Query: 139 PFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI-IKVPGCPPI 197 P I L +I+ G CA+ G V N +++ I P+ I VPGCPP Sbjct: 127 PVIRHLYLQMPEPKWVISMGACATSGGV---FNNYALVQGVNQYI---PVDIYVPGCPPR 180 Query: 198 PDVMSAIITYM 208 P+ + IT + Sbjct: 181 PEQLIYAITLL 191 >UniRef50_B6IT61 Hydrogenase-4 component I n=4 Tax=Bacteria RepID=B6IT61_RHOCS Length = 196 Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 40/117 (34%), Gaps = 19/117 (16%) Query: 108 IITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQ 167 + +L V G + + A ++A G CA G Sbjct: 79 FVASPRHADVLLVTGPVTTNMREALLKTW---------EATPDPKWVVALGQCAIDGGPF 129 Query: 168 AARPNPTQATPIDKVITDKPI-IKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRP 223 A ++KV+ P+ + +PGCPP P + A + ++ + P RP Sbjct: 130 ADSYAVVG--GVEKVV---PVDLMIPGCPPRPVDILAALVALIEAEARPP----SRP 177 >UniRef50_B6YU96 Membrane bound hydrogenase, NiFe-hydrogenase small subunit n=13 Tax=cellular organisms RepID=B6YU96_THEON Length = 175 Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 61/187 (32%), Gaps = 44/187 (23%) Query: 38 MAPKIAWALENKPRIPVVW-IHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAA 96 + +IA R P V+ ++ C C I + P Sbjct: 22 LEKRIAQLCRFIGRSPWVFHVNSGSCNGCDIEIIAALTPR-------------------- 61 Query: 97 AGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIA 156 AE ++ +L V G ++ + +IA Sbjct: 62 --YDAERFGVKLVGSPRHADVLLVTGPVTDQSLER---------VKLVYEQTPDPKIVIA 110 Query: 157 WGTCASWGCVQAARPNPTQATPIDKVITDKPI-IKVPGCPPIPDVMS-AIITYM-----V 209 G+C + G V P T A P+ +I P+ + VPGCPP P+ + ++ + + Sbjct: 111 VGSCPTGGSVFYESP-FTNA-PLSNII---PVDVYVPGCPPRPEAILYGVVLALEKLAKI 165 Query: 210 TFDRLPD 216 +P+ Sbjct: 166 LKGEVPE 172 >UniRef50_C7PSH0 NADH-quinone oxidoreductase, B subunit n=4 Tax=Sphingobacteriales RepID=C7PSH0_CHIPD Length = 187 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 41/110 (37%), Gaps = 16/110 (14%) Query: 94 MAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASA 153 MA+ + E + +L V G + + + A Sbjct: 60 MASTYDMSRFGSERMAFTPRQCDLLMVMGTISKKMAPV--------LRQVYLQMAEP-RW 110 Query: 154 IIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI-IKVPGCPPIPDVMS 202 ++A G CAS G V + ID+VI P+ + VPGCPP P+ + Sbjct: 111 VVAVGACASSGGVFDTY---SVLQGIDQVI---PVDVYVPGCPPRPEAII 154 >UniRef50_C5CEV5 NADH ubiquinone oxidoreductase 20 kDa subunit n=2 Tax=cellular organisms RepID=C5CEV5_KOSOT Length = 137 Score = 45.7 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 17/97 (17%) Query: 122 GNPPLGEQGMFCISSGRPFIEKLKRA---AAGASAIIAWGTC----ASWGCVQAARPNPT 174 G+ + + G E++ R A +IA GTC A++ + + T Sbjct: 48 GSVRHADVLLVTGMGGCKVSERVIRIYNQAPKPVFVIAVGTCPVAGATF------KESYT 101 Query: 175 QATPIDKVITDKPI-IKVPGCPPIPDVMSAIITYMVT 210 + P+D+ + P+ + +PGCPP P+ M A ++ ++ Sbjct: 102 RCGPLDRFV---PVDLYIPGCPPKPETMIAGLSELLG 135 >UniRef50_B2V8R1 NADH ubiquinone oxidoreductase 20 kDa subunit n=3 Tax=Aquificales RepID=B2V8R1_SULSY Length = 173 Score = 45.7 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 12/77 (15%) Query: 138 RPFIEKLKRA---AAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDK-PI-IKVP 192 R E + +A IIA G CA G + + I DK PI I + Sbjct: 96 RNMYEAVMKAYENVPNPKFIIAVGDCALDGG------TFKGSYAVMDGIKDKLPIDIWIK 149 Query: 193 GCPPIP-DVMSAIITYM 208 GCPP P D++S ++ + Sbjct: 150 GCPPEPIDIISGLLILL 166 >UniRef50_A0RY66 NADH-ubiquinone oxidoreductase, subunit B n=3 Tax=Thaumarchaeota RepID=A0RY66_CENSY Length = 160 Score = 45.7 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 15/97 (15%) Query: 107 DIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCV 166 + ++ V+G P + + +IA G CA G + Sbjct: 59 EAFGSLRQCDLIVVQGTITRKMA---------PRLRLVYDQMPEPKYVIAMGACAITGGL 109 Query: 167 QAARPNPTQATPIDKVITDKPI-IKVPGCPPIPDVMS 202 N ID V+ P+ + VPGCPP P+ + Sbjct: 110 YFDSYNV--LPGIDGVL---PVDVYVPGCPPRPETLI 141 >UniRef50_C1A8Z3 NADH-quinone oxidoreductase chain B n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A8Z3_GEMAT Length = 212 Score = 45.7 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 41/119 (34%), Gaps = 16/119 (13%) Query: 105 FEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWG 164 E + +L G PL P + ++ + +I+ G CAS G Sbjct: 72 MERLSYSPRQADVLLCAGRVPLKLA---------PVLRRIYQQMPQPKWVISMGACASTG 122 Query: 165 CVQAARPNPTQATPIDKVITDKPI-IKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGR 222 N ID +I P+ + VPGCPP P+ + I + + R Sbjct: 123 G---MFDNYAVVQGIDTII---PVDVYVPGCPPRPEALMHAIIMLQKKVMQERLKDSTR 175 >UniRef50_B6YR59 NADH-quinone oxidoreductase subunit B n=5 Tax=Bacteroidales RepID=NUOB_AZOPC Length = 191 Score = 45.7 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 16/104 (15%) Query: 125 PLGEQGMFCISS-GRPFIEKLKRAAAGA---SAIIAWGTCASWGCVQAARPNPTQATPID 180 P +FC + LKR +IA G+CA G + + ID Sbjct: 79 PRQADVVFCCGTIVHKMAPVLKRLYDQMSEPKYVIALGSCAISGGPF--KSSYHTIMGID 136 Query: 181 KVITDKPI-IKVPGCPPIPDVMSAIITYMVT------FDRLPDV 217 K+I P+ + +PGCPP PD M + + F +LP++ Sbjct: 137 KII---PVDVYIPGCPPRPDAMIYGMIQLARKIKVQNFFKLPNL 177 >UniRef50_C9RKY2 NADH-quinone oxidoreductase, B subunit n=2 Tax=cellular organisms RepID=C9RKY2_FIBSS Length = 419 Score = 45.3 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Query: 139 PFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI-IKVPGCPPI 197 P I+ L G +IA G C G N + +I P+ + VPGCPP Sbjct: 90 PAIQMLWEQIPGPKYVIAMGACTISGG-PFIYDNYSVVRGAQNLI---PVDVFVPGCPPR 145 Query: 198 PDVMSAIIT 206 P+ + + Sbjct: 146 PEALFHGLL 154 >UniRef50_Q0W2X8 Coenzyme F420-reducing hydrogenase, gamma subunit n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W2X8_UNCMA Length = 232 Score = 45.3 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 54/158 (34%), Gaps = 37/158 (23%) Query: 51 RIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIIT 110 + ++H C+ C SF+ + + ++ ++ +DY + A Sbjct: 3 KPKFAYVHLAACSGCEISFLDNFERVLD--MMDMVDIDYMTLIADAT------------- 47 Query: 111 QYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAAR 170 + +L V+G + +E LK+A ++AWG C+S A Sbjct: 48 EIPKVDLLFVDGA---------ACLQSKESVESLKKARENTGFLVAWGGCSS----TATI 94 Query: 171 PNPT-QATPIDKVITDKPIIK--------VPGCPPIPD 199 N + P I VPG PP P+ Sbjct: 95 NNFSRGGQSPQPQHESFPQISRLVKVDAFVPGSPPGPE 132 >UniRef50_C7IWD0 Os01g0791600 protein n=3 Tax=Oryza sativa Japonica Group RepID=C7IWD0_ORYSJ Length = 379 Score = 45.3 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 5/75 (6%) Query: 139 PFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI-IKVPGCPPI 197 P + +L +IA G C G + + T +DK+I P+ + +PGCPP Sbjct: 184 PSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYST-VRGVDKLI---PVDVYLPGCPPK 239 Query: 198 PDVMSAIITYMVTFD 212 P+ + +T ++ Sbjct: 240 PEAVIDALTKLLGLA 254 >UniRef50_C8W241 Hydrogenase, small subunit-like protein n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W241_DESAS Length = 236 Score = 45.3 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 61/181 (33%), Gaps = 44/181 (24%) Query: 36 AGMAPKIAWALENKPR------IPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDY 89 A + AL K + + + ++ C C I S+ + Y Sbjct: 89 PASAEDLGRALREKIKKICHRSLHIRYVDAGACNGC------------DFEINSMTNPVY 136 Query: 90 DDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAA 149 D + G D + +L V G + I+ + + A Sbjct: 137 D---IQQYGV-------DFVASPRHADMLLVTGVVTRNLE----IALHKTY-----EACP 177 Query: 150 GASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI-IKVPGCPPIP-DVMSAIITY 207 + ++A G CA G V +DK + P+ + VPGCPP P ++ I+T Sbjct: 178 RPALVVAVGACACGGGVFKEAYASGG--GVDKFL---PVDVYVPGCPPTPAQIIKGILTA 232 Query: 208 M 208 + Sbjct: 233 I 233 >UniRef50_Q1D8S3 NADH-quinone oxidoreductase subunit B n=2 Tax=Cystobacterineae RepID=NUOB_MYXXD Length = 187 Score = 45.3 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 16/94 (17%) Query: 116 YILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQ 175 +L V G L + P ++++ A ++A+G CAS G N Sbjct: 77 DLLMVVGTINLKQA---------PILKRVYEQMAEPKWVVAFGVCASSGGF---YDNYAV 124 Query: 176 ATPIDKVITDKPI-IKVPGCPPIPDVMSAIITYM 208 ID++I P+ + +PGCPP P+ + + + Sbjct: 125 LQGIDRII---PVDVYIPGCPPRPEQVLDGLMLL 155 >UniRef50_A3THJ2 NADH dehydrogenase beta subunit n=2 Tax=Bacteria RepID=A3THJ2_9MICO Length = 198 Score = 45.3 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 49/173 (28%), Gaps = 37/173 (21%) Query: 34 LGAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTL 93 L AG ++ R +W CC + P + Sbjct: 7 LPAGFVLTTLESVAGYMRKASIWPATFGLACCAIEMMAVGTPDYDIARFGM--------- 57 Query: 94 MAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASA 153 E ++ V G P + ++ Sbjct: 58 ------------ERFSATPRQADLMIVAGRVSNKMA---------PVVRQVYDQMPNPKW 96 Query: 154 IIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI-IKVPGCPPIPDVMSAII 205 +I+ G CAS G N +D +I P+ I +PGCPP P+++ I Sbjct: 97 VISMGVCASSGG---MFNNYAIVQGVDHII---PVDIYLPGCPPRPEMLLNAI 143 >UniRef50_C0QR84 NADH-quinone oxidoreductase chain b (Nadh dehydrogenasei, chain b) (Ndh-1, chain b) n=1 Tax=Persephonella marina EX-H1 RepID=C0QR84_PERMH Length = 181 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 20/90 (22%) Query: 116 YILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQ 175 +L V G P ++ + +IA G C+S G P PT Sbjct: 65 DVLIVAGTVVNKVA---------PMLKLIYDQMPDPKWVIAMGGCSSAGG-----PFPTY 110 Query: 176 AT--PIDKVITDKPI-IKVPGCPPIPDVMS 202 AT +D++I P+ + VPGCPP P + Sbjct: 111 ATLQGVDRII---PVDVYVPGCPPTPQALL 137 >UniRef50_UPI0001698F29 hypothetical protein Epers_23938 n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001698F29 Length = 156 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 40/113 (35%), Gaps = 26/113 (23%) Query: 59 GLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYIL 118 C C + + L + + + + + + A AG D+ Sbjct: 15 FSSCDGCQLALLNLGEALLE--LPNYLEIVHF----AEAGPSDPTAHVDLA--------- 59 Query: 119 AVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARP 171 VEG+ E IE++++ + +I+ G CA+ G +QA R Sbjct: 60 LVEGSISTPED-----------IERIRQVRKNSDYLISIGACATAGGIQALRN 101 >UniRef50_C7DI98 NADH-quinone oxidoreductase, B subunit n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DI98_9EURY Length = 206 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 7/72 (9%) Query: 138 RPFIEKLKRAAAGA---SAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGC 194 + + ++KR ++A+G CA+ G N ID+V+ + + GC Sbjct: 109 KSMVPRVKRLYEQMASPKYVVAYGECATAGGPWYESYNIV--KGIDQVLP-VDVYAI-GC 164 Query: 195 PPIPDVMSAIIT 206 PP P+ + A + Sbjct: 165 PPKPENLFAALM 176 >UniRef50_B0TH78 NADH-quinone oxidoreductase subunit B n=5 Tax=Bacteria RepID=NUOB_HELMI Length = 175 Score = 45.0 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 10/67 (14%) Query: 139 PFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQAT--PIDKVITDKPI-IKVPGCP 195 P I+++ IIA G+CA G A + A +DKVI P+ + VPGCP Sbjct: 94 PAIQRVYEQMPEPKWIIAMGSCACTGGPFA----DSYAVVPGVDKVI---PVDVYVPGCP 146 Query: 196 PIPDVMS 202 P P+ + Sbjct: 147 PRPEALL 153 >UniRef50_C7MLM8 Ni,Fe-hydrogenase III small subunit n=20 Tax=Bacteria RepID=C7MLM8_CRYCD Length = 283 Score = 45.0 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 29/167 (17%), Positives = 47/167 (28%), Gaps = 38/167 (22%) Query: 34 LGAGMAPKIAWALENKPRIPVVW-IHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDT 92 L +A A L + R ++ + C C + P+ Sbjct: 40 LDQKIAEAKAALLNDIKRSVYIYRVDCGGCNGCEIEIFGTLTPVFD-------------- 85 Query: 93 LMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGAS 152 AE + IL G + + AA Sbjct: 86 --------AERFGIKNMASPRHADILVYTGAVTRAMRLPALRAY---------EAAPDPK 128 Query: 153 AIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI-IKVPGCPPIP 198 I+++G C G + N DK+ P+ + +PGCPP P Sbjct: 129 LIVSYGACGCTGGIF--HDNYCVWGGTDKLF---PVDVYIPGCPPSP 170 >UniRef50_Q57936 Uncharacterized protein MJ0516 n=21 Tax=Euryarchaeota RepID=Y516_METJA Length = 148 Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 47/160 (29%), Gaps = 38/160 (23%) Query: 48 NKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFED 107 K I V ++ C C + P + + + Sbjct: 7 RKRSIHVCVVNTGGCNGCDIEIVACLAPRYD---IEQYGIYVHN---------------- 47 Query: 108 IITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQ 167 +L V G L ++++ ++A G CA G + Sbjct: 48 ---NPREADVLLVTGPVTLQWAER---------LKEIYEKTPEPKIVVAVGACALSGGI- 94 Query: 168 AARPNPTQATPIDKVITDKPI-IKVPGCPPIPDVMSAIIT 206 + +DKVI P+ K+PGCPP P + I Sbjct: 95 FKEGHVVG--GVDKVI---PVDAKIPGCPPRPSEIIETIL 129 >UniRef50_A5UXK1 NADH-quinone oxidoreductase subunit B 1 n=13 Tax=Bacteria RepID=NUOB1_ROSS1 Length = 268 Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 10/80 (12%) Query: 152 SAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI-IKVPGCPPIPDVMSAIITYMVT 210 +I+ G CA+ G N ID +I P+ + +PGCPP P+ + + + Sbjct: 100 RYVISMGACATSGGPFRDGYNV--LRGIDLLI---PVDVYIPGCPPRPEALLHALMTLQK 154 Query: 211 FDRLPDVDRMGRPLMFYGQR 230 +++ + +YG+R Sbjct: 155 QIDAQRLNQ----VRWYGKR 170 >UniRef50_Q8TXX1 Coenzyme F420-reducing hydrogenase, gamma subunit n=1 Tax=Methanopyrus kandleri RepID=Q8TXX1_METKA Length = 238 Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 18/120 (15%) Query: 96 AAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAII 155 G + + IL VEG + +EKL+ AA+ S ++ Sbjct: 24 EEGHEVVWSNLEGDEGEPDADILFVEGAVDFADAET---------LEKLEEAASAVSTVV 74 Query: 156 AWGTCASWGCVQA---ARPNPTQAT----PIDKVITDKPIIKVPGCPPIPDVMSAIITYM 208 + G+CA+ G + +P + P K + I GCPP DV+++ + + Sbjct: 75 SLGSCAATGGFERHVIGMRDPDRYHFTVFPAAKFVETDYAIN--GCPPTTDVIASFLRAL 132 >UniRef50_B0R3U2 NADH dehydrogenase-like complex subunit B n=11 Tax=Halobacteriaceae RepID=B0R3U2_HALS3 Length = 235 Score = 44.2 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 6/56 (10%) Query: 152 SAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI-IKVPGCPPIPDVMSAIIT 206 ++ G C++ G N ++VI P+ I +PGCPP P+ + + Sbjct: 130 KFVVNMGNCSTSGGPFQEGYNVV--KGAEEVI---PVDIHIPGCPPRPEALVYGVA 180 >UniRef50_A5FW47 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5FW47_ACICJ Length = 264 Score = 44.2 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 14/79 (17%) Query: 138 RPFIEKLKRAAAGASA---IIAWGTCASWGCVQAARPNPTQ---ATPIDKVITDKPIIKV 191 R +E L+R A ++A GTCA G + P + A P+D + Sbjct: 180 RAMLEPLRRTWEAMPAPRWVMASGTCAVSGGIAPGGPCLSGLEEALPVDLYL-------- 231 Query: 192 PGCPPIPDVMSAIITYMVT 210 PGCPP P + + + Sbjct: 232 PGCPPNPAAIIEALLMFLG 250 >UniRef50_Q978D5 Formate hydrogenlyase subunit 2 n=2 Tax=Thermoplasmatales RepID=Q978D5_THEVO Length = 222 Score = 44.2 bits (103), Expect = 0.009, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 43/149 (28%), Gaps = 41/149 (27%) Query: 57 IHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKY 116 I C C F+ P L + M A+ Sbjct: 94 IDSGACGACNMEFLSIFSPQYDANRLGIF--------MVNTPRYADA------------- 132 Query: 117 ILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQA 176 L V G G + +++ A +IA G CA G + P Sbjct: 133 -LIVMGVMTPGM---------KEALDRAYEAMPEPKLVIAMGACAVTGGIMGENP----- 177 Query: 177 TPIDKVITDKPIIKVPGCPPIPDVMSAII 205 + +K +++ GCPP P + A + Sbjct: 178 -----LDREKYNVEIAGCPPSPYTLIAAL 201 >UniRef50_B0SFT5 NADH-quinone oxidoreductase subunit B n=13 Tax=cellular organisms RepID=NUOB_LEPBA Length = 186 Score = 43.8 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 17/96 (17%) Query: 112 YNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARP 171 IL + G P + ++ A +I+ G CAS G + Sbjct: 72 RQADMILVL-GTITYKMA---------PVLRQIYDQLAEPKFVISVGACASSGGMFHTYG 121 Query: 172 NPTQATPIDKVITDKPI-IKVPGCPPIPDVMSAIIT 206 +D+++ P+ + VPGCPP P+ + + Sbjct: 122 ---VLQGVDRIL---PVDVYVPGCPPRPEAILDALV 151 >UniRef50_B6YWP9 NADH dehydrogenase (Ubiquinone), 20 kDa subunit n=4 Tax=Archaea RepID=B6YWP9_THEON Length = 191 Score = 43.4 bits (101), Expect = 0.012, Method: Composition-based stats. Identities = 21/166 (12%), Positives = 46/166 (27%), Gaps = 45/166 (27%) Query: 53 PVVW---IHGLECTCCTESFIRSAHP--LAKDVILSLISLDYDDTLMAAAGTQAEEVFED 107 +W ++ C C + P + + + L+ +A G E Sbjct: 4 NSLWVFHLNSGSCNGCDIEILNIFAPRNDVERLGIKLVGSPRHADAIAFTGPITRECLPK 63 Query: 108 IITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCV- 166 +I +A ++A G CA G + Sbjct: 64 VIDAL---------------------------------KAVPEPKVVLAIGACACGGGIW 90 Query: 167 QAARPNPTQATPIDKVITDK------PIIKVPGCPPIPDVMSAIIT 206 + +++ ++ + +PGCPP P+ + + Sbjct: 91 YDTYSVIGGVKELYRILKEEYNMEPPATVFIPGCPPKPEAIIYGVA 136 >UniRef50_Q1IZX2 NADH-quinone oxidoreductase subunit B n=16 Tax=cellular organisms RepID=NUOB_DEIGD Length = 178 Score = 43.4 bits (101), Expect = 0.012, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 42/136 (30%), Gaps = 22/136 (16%) Query: 91 DTLMAAAGTQAEEVF--EDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAA 148 + + + G F E ++ V G P + ++ Sbjct: 49 EMMSSTDGRNDLSRFGSEVFRASPRQADVMIVAGRLSKKMA---------PIMRRVYDQM 99 Query: 149 AGASAIIAWGTCASWGCVQ---AARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAII 205 +I+ G CAS G + A N P+D VPGCPP P+ + + Sbjct: 100 PDPKWVISMGACASSGGMFNNYAVVQNVDHVVPVDVF--------VPGCPPRPEALIYAV 151 Query: 206 TYMVTFDRLPDVDRMG 221 + R D G Sbjct: 152 MQLQKKVRGEAYDARG 167 >UniRef50_A4J659 NADH-quinone oxidoreductase subunit B n=34 Tax=Firmicutes RepID=NUOB_DESRM Length = 196 Score = 43.4 bits (101), Expect = 0.012, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 51/135 (37%), Gaps = 18/135 (13%) Query: 91 DTLMAAAGTQAEEV---FEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRA 147 + LMAA + + +E + ++ V G PF+ +L Sbjct: 73 EGLMAANMARFDLARFGYEVMRASPRQADVMLVCGTVTKKAA---------PFVVRLYEQ 123 Query: 148 AAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI-IKVPGCPPIPDVMSAIIT 206 A +IA G+CA G + +DK+I P+ + +PGC P PD + Sbjct: 124 MAEPKYVIAMGSCAISGGPFVDSYSVV--PGVDKLI---PVDVYIPGCAPRPDAVIHGFM 178 Query: 207 YMVTFDRLPDVDRMG 221 + P+V + G Sbjct: 179 KLKEKIINPEVVKRG 193 >UniRef50_P13064 Periplasmic [NiFeSe] hydrogenase small subunit (Fragment) n=2 Tax=Bacteria RepID=PHSS_DESNO Length = 32 Score = 43.4 bits (101), Expect = 0.013, Method: Composition-based stats. Identities = 9/29 (31%), Positives = 16/29 (55%) Query: 47 ENKPRIPVVWIHGLECTCCTESFIRSAHP 75 + + PV+W+ G CT C+ S + + P Sbjct: 3 QGAKKAPVIWVQGEGCTGCSVSLLNAVCP 31 >UniRef50_A8A9X3 NADH-quinone oxidoreductase, B subunit n=1 Tax=Ignicoccus hospitalis KIN4/I RepID=A8A9X3_IGNH4 Length = 207 Score = 43.0 bits (100), Expect = 0.019, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 17/107 (15%) Query: 138 RPFIEKLKRAA---AGASAIIAWGTCASWGC-------VQAARPNPTQATPIDKVITDKP 187 R E+L+R G +I G CA G V ++ P ++ D Sbjct: 81 RKLAERLRRLFMQTPGPRFVIVMGECAINGGPWWQSDYVLDGIHEVIESLP-EEYRKDVH 139 Query: 188 IIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGR-PLMFYGQRIHD 233 ++ + GCPP P+ ++ ++ + L + + R PL Y R+HD Sbjct: 140 VVNLAGCPPRPE---GLLRAILKMEELINEGDLARAPLTRY--RLHD 181 >UniRef50_C6PUG1 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PUG1_9CLOT Length = 242 Score = 43.0 bits (100), Expect = 0.019, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 9/66 (13%) Query: 154 IIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDR 213 +IA G+CA G + + + +++++ +I PGCPP P + Sbjct: 185 VIAVGSCAYSGGIF--KDGYSVCEDLNEILKVNLVI--PGCPPSPQAIL-----YGMLKI 235 Query: 214 LPDVDR 219 + +D Sbjct: 236 INKLDE 241 >UniRef50_C6X0Z2 NADH-ubiquinone oxidoreductase chain B n=2 Tax=Flavobacteriaceae RepID=C6X0Z2_FLAB3 Length = 185 Score = 43.0 bits (100), Expect = 0.019, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 7/54 (12%) Query: 154 IIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI-IKVPGCPPIPDVMSAIIT 206 ++A G CAS G + + IDK+I P+ + VPGCPP P+ + + Sbjct: 109 VVAVGACASSGGIFDTY---SVLQGIDKII---PVDVYVPGCPPRPEQIIEGVM 156 >UniRef50_A1RZ48 NADH-quinone oxidoreductase, B subunit n=3 Tax=Thermoprotei RepID=A1RZ48_THEPD Length = 171 Score = 43.0 bits (100), Expect = 0.020, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 20/95 (21%) Query: 117 ILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPN---P 173 ++ +EG I + +IA G CA G + N P Sbjct: 82 LMVIEGTLTKKMGEAAKIVYDQM---------PWPKFVIAMGACAIDGGLFYNSYNIVRP 132 Query: 174 TQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYM 208 P++ +PGCPP P+ ++ I + Sbjct: 133 KDILPVEYF--------IPGCPPRPEAVAQAIIML 159 >UniRef50_Q8DKZ4 NAD(P)H-quinone oxidoreductase subunit K n=21 Tax=cellular organisms RepID=NDHK_THEEB Length = 237 Score = 43.0 bits (100), Expect = 0.020, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 5/56 (8%) Query: 152 SAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI-IKVPGCPPIPDVMSAIIT 206 +IA G C G + ++ + + +DK+I P+ + +PGCPP P+ + I Sbjct: 109 KYVIAMGACTITGGMFSSD-SYSAVRGVDKLI---PVDVYLPGCPPRPEAIMDAIV 160 >UniRef50_A2BJ94 NAD(P)H-quinone oxidoreductase chain K n=10 Tax=Thermoprotei RepID=A2BJ94_HYPBU Length = 209 Score = 42.6 bits (99), Expect = 0.020, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 20/92 (21%) Query: 117 ILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPT-- 174 +L VEG + R E++ +IA G CA G + N Sbjct: 85 VLLVEGTLTRKM-----ARAARLVWEQM----PWPKFVIAMGACAITGGIFYNSYNIVRV 135 Query: 175 -QATPIDKVITDKPIIKVPGCPPIPDVMSAII 205 Q P+D VPGCPP P+ ++ + Sbjct: 136 NQILPVDYY--------VPGCPPTPEAVANAL 159 >UniRef50_UPI00016C3AA7 NADH-quinone oxidoreductase, B subunit n=2 Tax=Bacteria RepID=UPI00016C3AA7 Length = 201 Score = 42.6 bits (99), Expect = 0.022, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 23/122 (18%) Query: 93 LMAAAGTQAEEVF---EDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAA 149 LMA A ++ + E + ++ V G + P ++++ Sbjct: 41 LMATASSRYDIARFGSEAMRFSPRQCDVMIVAGRVAMKM---------VPVMQRIWLQMP 91 Query: 150 GASAIIAWGTCASWGCVQAARPNPTQAT--PIDKVITDKPI-IKVPGCPPIPDVMSAIIT 206 I+ G CAS G V T A ID+ I P+ + VPGCPP P+ + + Sbjct: 92 EPKWCISMGACASSGGVFD-----TYAVVQGIDRFI---PVDVYVPGCPPRPEQLIRAVL 143 Query: 207 YM 208 + Sbjct: 144 DL 145 >UniRef50_Q3V6B5 Hydrogen-uptake [NiFe] hydrogenase small subunit (Fragment) n=1 Tax=Hydrogenimonas thermophila RepID=Q3V6B5_9PROT Length = 64 Score = 42.6 bits (99), Expect = 0.026, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 4/64 (6%) Query: 299 ENGFWDRGSFYSRVVD----IPQMGTHSTADTVGLTALGVVAAAVGVHAVASAVDQRRRH 354 E FWD +F + D + + D + G++A A+A++++R Sbjct: 1 EPDFWDTYAFERPIDDTTIVVASNSIDTKIDRSSFGVVAATEIGAGIYAAATALEKKRAD 60 Query: 355 NQQP 358 + Sbjct: 61 KGEA 64 >UniRef50_B4U8H3 NADH-quinone oxidoreductase subunit B n=4 Tax=Bacteria RepID=NUOB_HYDS0 Length = 177 Score = 42.3 bits (98), Expect = 0.030, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 20/94 (21%) Query: 116 YILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQ 175 +L V G P ++ + I+ G CAS G P PT Sbjct: 66 DVLIVAGTVVNKVA---------PMLKLVWDQMPEPKWCISMGGCASAGG-----PFPTY 111 Query: 176 AT--PIDKVITDKPI-IKVPGCPPIPDVMSAIIT 206 +T ID++I P+ + +PGCPP P + + Sbjct: 112 STLQGIDRII---PVDVYIPGCPPTPQGLIYGLL 142 >UniRef50_D1B297 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B297_SULD5 Length = 138 Score = 42.3 bits (98), Expect = 0.030, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 43/152 (28%), Gaps = 38/152 (25%) Query: 57 IHGLECTCCTESFIRSAHPLAKDVILSLISLDY--DDTLMAAAGTQAEEVFEDIITQYNG 114 I+ C C + S L + Y D TL Sbjct: 10 INTGSCNGCDVEILASV--LLPKFGFDALGCVYTNDPTLAN------------------- 48 Query: 115 KYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPT 174 IL V G P+++ + ++A G C G V T Sbjct: 49 --ILLVTGAITARST---------PYLQAALKQLPSKKIVVALGICPISGGVFRDSYAIT 97 Query: 175 QATPIDKVITDKPIIKVPGCPPIPDVMSAIIT 206 P+D + + + GCPP P ++ + Sbjct: 98 G--PLDTFVDVD--VNISGCPPSPKEIAQGLA 125 >UniRef50_P13062 Periplasmic [NiFe] hydrogenase small subunit (Fragment) n=18 Tax=Bacteria RepID=PHNS_DESMU Length = 32 Score = 42.3 bits (98), Expect = 0.032, Method: Composition-based stats. Identities = 10/29 (34%), Positives = 17/29 (58%) Query: 48 NKPRIPVVWIHGLECTCCTESFIRSAHPL 76 R VV++H +CT C+E+ +R+ P Sbjct: 3 TGRRPSVVYLHAAQCTGCSEALLRTTKPF 31 >UniRef50_UPI0001854780 quinone-reactive Ni/Fe hydrogenase HydA n=1 Tax=Helicobacter pylori HPKX_438_CA4C1 RepID=UPI0001854780 Length = 68 Score = 42.3 bits (98), Expect = 0.033, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 18/40 (45%) Query: 2 NNEETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPK 41 N + G++RR LK+ + + +L L A AP Sbjct: 29 NEHKNLQDEFEGAGISRRDLLKWAGMMSATLALPASFAPL 68 >UniRef50_A6L170 NADH-quinone oxidoreductase subunit B n=35 Tax=Bacteroidales RepID=NUOB_BACV8 Length = 198 Score = 41.9 bits (97), Expect = 0.036, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 6/66 (9%) Query: 139 PFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI-IKVPGCPPI 197 P +++L A +IA G CA G + +DK++ P+ + +PGCPP Sbjct: 107 PVLKRLYDQMADPKYVIAVGGCAISGGPFKKSYHVLN--GVDKIL---PVDVYIPGCPPR 161 Query: 198 PDVMSA 203 P+ + Sbjct: 162 PEALLY 167 >UniRef50_C7IG01 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IG01_9CLOT Length = 266 Score = 41.9 bits (97), Expect = 0.042, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 9/73 (12%) Query: 138 RPFIEKLKR---AAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI-IKVPG 193 R E L + A ++A G CA G + + + ID ++ P+ + +PG Sbjct: 193 RNMEEALVKTYNATPSPKLVVAAGACACSGGLF--KDSYAGRNGIDTIL---PVDVYIPG 247 Query: 194 CPPIPDVMSAIIT 206 CPP P + I Sbjct: 248 CPPRPQALIYGIL 260 >UniRef50_Q5FU78 Putative uncharacterized protein n=1 Tax=Gluconobacter oxydans RepID=Q5FU78_GLUOX Length = 161 Score = 41.9 bits (97), Expect = 0.044, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 6/67 (8%) Query: 140 FIEKLKRAAAGASAIIAWGTCASWGC-VQAARPNPTQATPIDKVITDKPIIKVPGCPPIP 198 ++++ RA ++IA G CA G A + V + GCPP P Sbjct: 94 MVDRVWRAMPPGRSLIAVGACAVDGGPFPAGYATLGGLEALTPVRR-----SIAGCPPSP 148 Query: 199 DVMSAII 205 D + + Sbjct: 149 DDILRAL 155 >UniRef50_B1W4V9 NADH-quinone oxidoreductase subunit B 2 n=27 Tax=Bacteria RepID=NUOB2_STRGG Length = 235 Score = 41.9 bits (97), Expect = 0.044, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 62/176 (35%), Gaps = 36/176 (20%) Query: 32 LGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDD 91 LG+ + +AP+ + N R +W+ CC FI ++ + L +I Sbjct: 31 LGVLSRLAPEPMKVVLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPF---- 86 Query: 92 TLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGA 151 ++ V G P +++L Sbjct: 87 -----------------APGPRQADLMIVSGTVTDKMA---------PAVKRLYEQMPEP 120 Query: 152 SAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI-IKVPGCPPIPDVMSAIIT 206 +I++G C++ G + T +D++I P+ + VPGCPP P+ + I Sbjct: 121 KYVISFGACSNCGGPYWDSYSVT--KGVDQII---PVDVYVPGCPPRPEALLQGIL 171 >UniRef50_A5FW77 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5FW77_ACICJ Length = 164 Score = 41.9 bits (97), Expect = 0.044, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 46/120 (38%), Gaps = 28/120 (23%) Query: 94 MAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGAS- 152 MAA G ++ IL V G + R E ++++ AG + Sbjct: 53 MAAHGIA-------MVEDLRAADILLVTG------------VATRNLAEAVRKSLAGMAP 93 Query: 153 --AIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI-IKVPGCPPIPDVMSAIITYMV 209 ++A G CA G V P + VI P+ + + GCPP P + A + +V Sbjct: 94 PRFVVAAGDCALDGGVFKGVPAVLG--GVQAVI---PVDLLIAGCPPAPRQILAGLVALV 148 >UniRef50_A1ASR2 NADH ubiquinone oxidoreductase, 20 kDa subunit n=3 Tax=cellular organisms RepID=A1ASR2_PELPD Length = 179 Score = 41.5 bits (96), Expect = 0.053, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 51/179 (28%), Gaps = 51/179 (28%) Query: 55 VWI---HGLECTCCTESFIRSAHP--LAKDVILSLISLDYDDTLMAAAGTQAEEVFEDII 109 +W+ + C C + P + + L+ +M G A + Sbjct: 14 LWVYHANSGGCNGCDIEVLNVLTPYYDVERFGIKLVGSPRHADVMLCQG-PAMRSTGKAL 72 Query: 110 TQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAA 169 + A G + A G+CA G + Sbjct: 73 QRAYA--------------------------------AMPGPKLVFAIGSCACGGGIWHD 100 Query: 170 RPNPTQATPIDKVITDKPIIK--VPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMF 226 P++K+I + VPGCPP P+ + + VD+ P+ F Sbjct: 101 SYAVHG--PVEKLIP----VNYYVPGCPPRPEAIIWGVAVAAGL-----VDKKTAPVEF 148 >UniRef50_B8J1E3 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8J1E3_DESDA Length = 185 Score = 41.5 bits (96), Expect = 0.056, Method: Composition-based stats. Identities = 24/177 (13%), Positives = 47/177 (26%), Gaps = 44/177 (24%) Query: 47 ENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFE 106 +V C C + P+ +++ Sbjct: 11 SRLKSPWIVHFDCGSCNGCDIEVLACLTPMYDVERFGVVN-------------------- 50 Query: 107 DIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCV 166 +L V G R ++++ A+I+ G C G V Sbjct: 51 --AGNPKHADVLLVTGTVNHRN---------RHVLKQIYEQMPSPKAVISLGACNLSGGV 99 Query: 167 QAARPNPTQATPIDKVITDKPI-IKVPGCPPIPDVMS-------AIITYMVTFDRLP 215 N ++ P+ + VPGCPP P+ + ++ + +P Sbjct: 100 FKDTYNV-----LNGAHNVIPVDVFVPGCPPKPEAIIDGVVEALGVLKAKMGMGPVP 151 >UniRef50_A3ETD3 Putative hydrogenase-3 (HycG) n=3 Tax=Leptospirillum RepID=A3ETD3_9BACT Length = 169 Score = 41.1 bits (95), Expect = 0.065, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 4/60 (6%) Query: 146 RAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAII 205 A A ++A G CA G V R +P +D + + KVPGCPP P + + Sbjct: 99 EAMASPKTVLAVGDCACQGGVF--RGSPAVRNGVDGLFPEAR--KVPGCPPSPSDILRAL 154 >UniRef50_Q0W2C0 Hydrogenase, small subunit-like protein (HycG-like) n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W2C0_UNCMA Length = 247 Score = 40.7 bits (94), Expect = 0.086, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 24/68 (35%), Gaps = 12/68 (17%) Query: 146 RAAAGASAIIAWGTCASWGCVQ----AARPNPTQATPIDKVITDKPIIKVPGCPPIPDVM 201 A +IA G CA G + A P+D + +PGCPP P + Sbjct: 180 NATPDPKMVIAMGACAITGGIFRDSYAVYNGVDALVPVD--------VYIPGCPPRPQAI 231 Query: 202 SAIITYMV 209 I + Sbjct: 232 IQGIMLAI 239 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_D0ZEI9 Hydrogenase-1 small subunit n=1 Tax=Edwardsiella... 441 e-122 UniRef50_C1DUF2 Quinone-reactive Ni/Fe-hydrogenase small chain (... 419 e-116 UniRef50_B0TDW1 Uptake [ni/fe] hydrogenase small subunit n=11 Ta... 415 e-114 UniRef50_O33405 Uptake hydrogenase small subunit n=221 Tax=Bacte... 415 e-114 UniRef50_P12635 Uptake hydrogenase small subunit n=8 Tax=Bacteri... 411 e-113 UniRef50_C3XGH6 Ni/Fe-hydrogenase small subunit n=8 Tax=Proteoba... 408 e-112 UniRef50_D1BNB1 Hydrogenase (NiFe) small subunit HydA n=5 Tax=Ve... 406 e-112 UniRef50_Q3ABV6 [Ni/Fe] hydrogenase, small subunit n=3 Tax=Clost... 394 e-108 UniRef50_A7BI79 Ni,Fe-hydrogenase small subunit n=2 Tax=Aquifica... 394 e-108 UniRef50_P31884 Quinone-reactive Ni/Fe-hydrogenase small chain n... 389 e-107 UniRef50_C6NZV2 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Pr... 385 e-105 UniRef50_A8LH34 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Fr... 384 e-105 UniRef50_C2KSS0 Hydrogenase (Acceptor) n=3 Tax=Bacteria RepID=C2... 381 e-104 UniRef50_A6DCC1 NI/FE-HYDROGENASE SMALL SUBUNIT n=1 Tax=Caminiba... 379 e-103 UniRef50_A7NNQ8 Hydrogenase (NiFe) small subunit HydA n=12 Tax=B... 377 e-103 UniRef50_Q06173 Periplasmic [NiFe] hydrogenase small subunit 1 n... 374 e-102 UniRef50_B2UPQ9 Hydrogenase (NiFe) small subunit HydA n=8 Tax=Ba... 372 e-101 UniRef50_A5GFC8 Hydrogenase (NiFe) small subunit HydA n=6 Tax=Pr... 371 e-101 UniRef50_C0QEJ1 HynB n=4 Tax=Deltaproteobacteria RepID=C0QEJ1_DESAH 361 2e-98 UniRef50_B4U5S1 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Hy... 356 7e-97 UniRef50_P13061 Periplasmic [NiFe] hydrogenase small subunit n=6... 354 3e-96 UniRef50_B8FWY3 Hydrogenase (NiFe) small subunit HydA n=2 Tax=De... 350 5e-95 UniRef50_D1U6F3 Hydrogenase (NiFe) small subunit HydA n=1 Tax=De... 344 3e-93 UniRef50_C7MNR7 Hydrogenase (NiFe) small subunit HydA n=4 Tax=Co... 344 4e-93 UniRef50_Q7VJP5 Putative uncharacterized protein n=3 Tax=Helicob... 343 5e-93 UniRef50_B9KFD7 Quinone-reactive Ni/Fe-hydrogenase, small subuni... 342 1e-92 UniRef50_Q31DZ5 Ni,Fe-hydrogenase small subunit n=4 Tax=Proteoba... 342 1e-92 UniRef50_UPI000197A0EB hypothetical protein HcinC1_01015 n=1 Tax... 340 3e-92 UniRef50_Q24X54 Hup-type Ni,Fe-hydrogenase small subunit n=3 Tax... 338 2e-91 UniRef50_P69743 Hydrogenase-2 small chain n=130 Tax=Proteobacter... 337 3e-91 UniRef50_P61429 Periplasmic [NiFe] hydrogenase small subunit 2 n... 336 6e-91 UniRef50_Q24VQ2 Ni,Fe-hydrogenase small subunit n=2 Tax=Desulfit... 334 5e-90 UniRef50_C3XE47 Quinone-reactive Ni/Fe hydrogenase n=1 Tax=Helic... 332 1e-89 UniRef50_D2BG44 Ni/Fe hydrogenase, small subunit n=5 Tax=Dehaloc... 332 2e-89 UniRef50_Q5HT18 Hydrogenase, (NiFe)/(NiFeSe) small subunit famil... 329 1e-88 UniRef50_P13063 Periplasmic [NiFeSe] hydrogenase small subunit n... 321 2e-86 UniRef50_A5D1L0 Ni,Fe-hydrogenase I small subunit n=1 Tax=Peloto... 321 3e-86 UniRef50_D2RD73 Hydrogenase (NiFe) small subunit HydA n=3 Tax=Ar... 318 2e-85 UniRef50_Q6ARY6 Related to periplasmic [NiFeSe] hydrogenase, sma... 315 1e-84 UniRef50_C8S958 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Fe... 313 6e-84 UniRef50_A1HLY8 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Th... 313 7e-84 UniRef50_B8HZS9 Hydrogenase (NiFe) small subunit HydA n=3 Tax=Cl... 293 5e-78 UniRef50_B8D1R7 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Ha... 292 1e-77 UniRef50_B1I618 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Cl... 292 2e-77 UniRef50_A5I2W4 Hydrogenase small subunit n=13 Tax=Firmicutes Re... 292 2e-77 UniRef50_B9L9V0 Hydrogenase n=1 Tax=Nautilia profundicola AmH Re... 288 3e-76 UniRef50_Q1NM22 Ni-Fe hydrogenase, small subunit n=3 Tax=Deltapr... 286 8e-76 UniRef50_B2TM84 [Ni/Fe] hydrogenase, small subunit n=2 Tax=Clost... 283 8e-75 UniRef50_Q46BG0 Methanophenazine-reducing hydrogenase, small sub... 282 2e-74 UniRef50_Q0W5V7 F420-nonreducing hydrogenase (Membrane-bound), s... 280 5e-74 UniRef50_Q1NRB7 Ni-Fe hydrogenase, small subunit:Twin-arginine t... 276 6e-73 UniRef50_D1VJL8 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Ac... 273 9e-72 UniRef50_D2ATL3 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 273 1e-71 UniRef50_Q0RN51 Uptake hydrogenase small subunit (Hydrogenlyase)... 271 2e-71 UniRef50_A4YF94 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 271 2e-71 UniRef50_C1SPM4 Hydrogenase (NiFe) small subunit HydA n=1 Tax=De... 271 3e-71 UniRef50_A1RXR6 Hydrogenase (NiFe) small subunit HydA n=3 Tax=Th... 271 3e-71 UniRef50_C8R2V0 Hydrogenase (NiFe) small subunit HydA n=1 Tax=De... 268 2e-70 UniRef50_C1DUE6 Hydrogenase-2, small subunit n=1 Tax=Sulfurihydr... 260 5e-68 UniRef50_C0QPV6 Hydrogenase-2, small subunit n=7 Tax=Bacteria Re... 259 1e-67 UniRef50_D2LGK5 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 258 2e-67 UniRef50_D2QHS8 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 254 3e-66 UniRef50_C0BH99 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Fl... 254 5e-66 UniRef50_Q2W8A6 Ni,Fe-hydrogenase I small subunit n=4 Tax=Proteo... 251 4e-65 UniRef50_A6QAV6 Ni-Fe hydrogenase, small subunit HupS n=3 Tax=Ep... 250 7e-65 UniRef50_A3MWH6 Nickel-iron dehydrogenase small subunit, N-termi... 250 7e-65 UniRef50_B9L8N0 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 246 9e-64 UniRef50_Q79IP7 Regulatory n=46 Tax=Proteobacteria RepID=Q79IP7_... 237 4e-61 UniRef50_Q30QL6 Ni-Fe hydrogenase, small subunit n=2 Tax=Campylo... 236 1e-60 UniRef50_B1Y6B2 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 232 2e-59 UniRef50_A4YFB4 Nickel-iron dehydrogenase small subunit, N-termi... 225 2e-57 UniRef50_C8S807 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 170 1e-40 UniRef50_Q58591 F420-non-reducing hydrogenase vhu subunit G n=13... 169 1e-40 UniRef50_D2BHA4 Nickel-dependent hydrogenase, group 3, small sub... 162 2e-38 UniRef50_Q8TYW2 Coenzyme F420-reducing hydrogenase, gamma subuni... 159 2e-37 UniRef50_B1L5Y5 Coenzyme F420-reducing hydrogenase, gamma subuni... 158 2e-37 UniRef50_C8X546 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 158 3e-37 UniRef50_C9R9W3 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 158 3e-37 UniRef50_D2REQ3 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 155 2e-36 UniRef50_B1I576 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 154 5e-36 UniRef50_A2BMI5 NiFe hydrogenase n=1 Tax=Hyperthermus butylicus ... 154 6e-36 UniRef50_A0LP54 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 153 8e-36 UniRef50_Q50782 F420-non-reducing hydrogenase subunit G n=15 Tax... 152 2e-35 UniRef50_Q0W6J6 Coenzyme F420-non-reducing hydrogenase (Methyl v... 152 2e-35 UniRef50_B1ZXG1 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 150 9e-35 UniRef50_B4SFA2 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 144 6e-33 UniRef50_B5YFX1 F420-non-reducing hydrogenase subunit G n=1 Tax=... 142 2e-32 UniRef50_B5EQ53 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 141 5e-32 UniRef50_Q2IH66 Methyl-viologen-reducing hydrogenase, delta subu... 140 8e-32 UniRef50_Q1NJF2 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 137 4e-31 UniRef50_Q39QE2 F420-non-reducing hydrogenase subunit G n=5 Tax=... 137 5e-31 UniRef50_A0LKF2 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 137 5e-31 UniRef50_O28898 Methylviologen-reducing hydrogenase, subunit gam... 136 2e-30 UniRef50_C6A155 NiFe hydrogenase I, subunit delta n=1 Tax=Thermo... 134 6e-30 UniRef50_C1DUT4 Putative [NiFe] hydrogenase, delta subunit n=1 T... 134 7e-30 UniRef50_A6UVU9 Coenzyme F420 hydrogenase n=2 Tax=Euryarchaeota ... 131 5e-29 UniRef50_B6YU80 Cytosolic NiFe-hydrogenase, delta subunit n=9 Ta... 130 1e-28 UniRef50_A8UU12 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 129 1e-28 UniRef50_C6YT65 Predicted protein n=2 Tax=Francisella philomirag... 127 8e-28 UniRef50_C0QP84 Putative [NiFe] hydrogenase, delta subunit n=1 T... 125 3e-27 UniRef50_C7NPL1 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 124 4e-27 UniRef50_Q2LYD8 Nickel-dependent hydrogenase, small chain n=2 Ta... 123 1e-26 UniRef50_C5S9B0 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 123 1e-26 UniRef50_B1L3Q1 Coenzyme F420-reducing hydrogenase, gamma subuni... 122 2e-26 UniRef50_B6YSK0 Sulfhydrogenase II, delta chain n=6 Tax=Thermoco... 122 3e-26 UniRef50_Q0W6U0 Coenzyme F420-non-reducing hydrogenase (Methyl v... 121 4e-26 UniRef50_Q2J4E9 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 118 3e-25 UniRef50_A0L609 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 117 9e-25 UniRef50_D1TP47 Ni Fe-hydrogenase I small subunit-like protein n... 114 6e-24 UniRef50_P80491 Coenzyme F420 hydrogenase subunit gamma n=27 Tax... 114 8e-24 UniRef50_C8WGI4 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 111 4e-23 UniRef50_B5EBV9 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 111 5e-23 UniRef50_A0LLU1 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 111 5e-23 UniRef50_Q00393 Coenzyme F420 hydrogenase subunit gamma n=3 Tax=... 109 1e-22 UniRef50_C0GED7 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 109 2e-22 UniRef50_A3DKH2 NADH-quinone oxidoreductase, B subunit n=5 Tax=c... 108 3e-22 UniRef50_A1SU83 Hydrogen dehydrogenase n=23 Tax=Proteobacteria R... 108 3e-22 UniRef50_B6YT72 Hydrogenase 4, component I or formate hydrogen l... 107 5e-22 UniRef50_UPI0001C420D3 coenzyme F420 hydrogenase gamma subunit F... 105 2e-21 UniRef50_C7NUN9 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 104 4e-21 UniRef50_B2A054 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 104 5e-21 UniRef50_A7GWN3 HsdS n=9 Tax=Proteobacteria RepID=A7GWN3_CAMC5 104 6e-21 UniRef50_Q2KJQ3 HoxY n=4 Tax=Proteobacteria RepID=Q2KJQ3_CHRVI 104 7e-21 UniRef50_B5YB68 NAD-reducing hydrogenase HoxS delta subunit n=2 ... 104 8e-21 UniRef50_P22319 NAD-reducing hydrogenase hoxS subunit delta n=6 ... 103 1e-20 UniRef50_A9KS72 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 103 1e-20 UniRef50_B8G3U7 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 102 2e-20 UniRef50_A5UM99 Coenzyme F420-reducing hydrogenase, gamma subuni... 102 2e-20 UniRef50_Q0W6T1 [NiFe]-hydrogenase, small subunit (EchC-like) n=... 100 1e-19 UniRef50_B6YTV9 Coenzyme F420 hydrogenase gamma subunit n=1 Tax=... 100 2e-19 UniRef50_C5A2R7 Coenzyme F420 hydrogenase subunit gamma (FrhG) n... 99 2e-19 UniRef50_Q3M430 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 99 3e-19 UniRef50_Q21RP8 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 98 4e-19 UniRef50_Q59113 Hydrogenase small beta subunit n=2 Tax=Bacteria ... 98 4e-19 UniRef50_B6YU96 Membrane bound hydrogenase, NiFe-hydrogenase sma... 98 4e-19 UniRef50_B3TC56 Putative NADH ubiquinone oxidoreductase, 20 Kd s... 97 7e-19 UniRef50_B6YTX0 Hydrogenase 4, component I or formate hydrogen l... 97 1e-18 UniRef50_C5U7Y6 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 91 6e-17 UniRef50_B5YKI3 NADH-quinone oxidoreductase subunit B 1 n=1 Tax=... 90 1e-16 UniRef50_D1Z1F3 Coenzyme F420 hydrogenase subunit gamma n=1 Tax=... 90 1e-16 UniRef50_A9A345 NADH-quinone oxidoreductase, B subunit n=1 Tax=N... 89 3e-16 UniRef50_Q24ST9 Formate hydrogenlyase subunit 7 n=2 Tax=Desulfit... 89 3e-16 UniRef50_C8QXK1 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 89 3e-16 UniRef50_C7PSH0 NADH-quinone oxidoreductase, B subunit n=4 Tax=S... 88 4e-16 UniRef50_B6IT61 Hydrogenase-4 component I n=4 Tax=Bacteria RepID... 88 6e-16 UniRef50_Q58758 Uncharacterized protein MJ1363 n=17 Tax=Euryarch... 88 6e-16 UniRef50_C5A2Q7 Formate hydrogenlyase II subunit H (Mhy2H) n=3 T... 87 1e-15 UniRef50_C7JEU9 NADH-ubiquinone oxidoreductase 20 kDa subunit n=... 86 2e-15 UniRef50_Q1IPE7 NADH-quinone oxidoreductase subunit B 1 n=10 Tax... 84 6e-15 UniRef50_Q21TB3 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 83 2e-14 UniRef50_A6LXQ4 NADH-quinone oxidoreductase subunit B n=4 Tax=Ba... 82 3e-14 UniRef50_B1L7S0 F420H2 dehydrogenase subunit n=3 Tax=Archaea Rep... 81 7e-14 UniRef50_B8HLE8 NAD(P)H-quinone oxidoreductase subunit K 2 n=94 ... 81 1e-13 UniRef50_Q53161 Hydrogen uptake hydrogenase small subunit (Fragm... 80 2e-13 UniRef50_A9GUX6 NADH-quinone oxidoreductase subunit B 1 n=10 Tax... 78 6e-13 UniRef50_A6UVJ5 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 75 3e-12 Sequences not found previously or not previously below threshold: UniRef50_B5IEA4 NADH ubiquinone oxidoreductase, 20 Kd subunit fa... 102 2e-20 UniRef50_B8ERX2 Hydrogen dehydrogenase n=1 Tax=Methylocella silv... 96 1e-18 UniRef50_Q57936 Uncharacterized protein MJ0516 n=21 Tax=Euryarch... 91 8e-17 UniRef50_C7MLM8 Ni,Fe-hydrogenase III small subunit n=20 Tax=Bac... 90 1e-16 UniRef50_B8J1E3 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 90 2e-16 UniRef50_A3THJ2 NADH dehydrogenase beta subunit n=2 Tax=Bacteria... 89 2e-16 UniRef50_B9L8U0 Hydrogenase-4 component I n=2 Tax=Epsilonproteob... 89 4e-16 UniRef50_A4EBM2 Putative uncharacterized protein n=1 Tax=Collins... 87 1e-15 UniRef50_B6GAA3 Putative uncharacterized protein n=1 Tax=Collins... 86 2e-15 UniRef50_A0RY66 NADH-ubiquinone oxidoreductase, subunit B n=3 Ta... 86 2e-15 UniRef50_C1A8Z3 NADH-quinone oxidoreductase chain B n=1 Tax=Gemm... 85 5e-15 UniRef50_C7IG01 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 84 6e-15 UniRef50_Q8DKZ4 NAD(P)H-quinone oxidoreductase subunit K n=21 Ta... 84 6e-15 UniRef50_UPI00016C3AA7 NADH-quinone oxidoreductase, B subunit n=... 84 9e-15 UniRef50_Q0W2X8 Coenzyme F420-reducing hydrogenase, gamma subuni... 83 2e-14 UniRef50_B6YR59 NADH-quinone oxidoreductase subunit B n=5 Tax=Ba... 83 2e-14 UniRef50_A2BJ94 NAD(P)H-quinone oxidoreductase chain K n=10 Tax=... 82 2e-14 UniRef50_A6L170 NADH-quinone oxidoreductase subunit B n=35 Tax=B... 82 3e-14 UniRef50_A1ASR2 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 82 3e-14 UniRef50_C6X0Z2 NADH-ubiquinone oxidoreductase chain B n=2 Tax=F... 81 5e-14 UniRef50_B0TH78 NADH-quinone oxidoreductase subunit B n=5 Tax=Ba... 81 6e-14 UniRef50_B1W4V9 NADH-quinone oxidoreductase subunit B 2 n=27 Tax... 81 6e-14 UniRef50_P16433 Formate hydrogenlyase subunit 7 n=169 Tax=Bacter... 81 6e-14 UniRef50_Q1AVI4 NADH-quinone oxidoreductase subunit B n=15 Tax=B... 81 7e-14 UniRef50_Q1IZX2 NADH-quinone oxidoreductase subunit B n=16 Tax=c... 81 8e-14 UniRef50_Q1D8S3 NADH-quinone oxidoreductase subunit B n=2 Tax=Cy... 81 9e-14 UniRef50_C5GDP9 NADH-ubiquinone oxidoreductase 20 kDa subunit n=... 80 1e-13 UniRef50_B1ZSE5 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 80 1e-13 UniRef50_C7IWD0 Os01g0791600 protein n=3 Tax=Oryza sativa Japoni... 79 2e-13 UniRef50_B2IID4 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 79 2e-13 UniRef50_Q0W2C0 Hydrogenase, small subunit-like protein (HycG-li... 79 2e-13 UniRef50_C5CEV5 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 79 3e-13 UniRef50_B6YWP9 NADH dehydrogenase (Ubiquinone), 20 kDa subunit ... 79 3e-13 UniRef50_A5UXK1 NADH-quinone oxidoreductase subunit B 1 n=13 Tax... 78 5e-13 UniRef50_C9RKY2 NADH-quinone oxidoreductase, B subunit n=2 Tax=c... 78 6e-13 UniRef50_C6PUG1 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 78 6e-13 UniRef50_A8M069 NADH-quinone oxidoreductase subunit B 1 n=6 Tax=... 77 7e-13 UniRef50_C8W241 Hydrogenase, small subunit-like protein n=1 Tax=... 77 8e-13 UniRef50_Q12F15 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 77 9e-13 UniRef50_A3PKI1 NADH-quinone oxidoreductase subunit B 2 n=6 Tax=... 77 9e-13 UniRef50_Q1IL91 NADH-quinone oxidoreductase subunit B 2 n=4 Tax=... 77 1e-12 UniRef50_UPI0001698F29 hypothetical protein Epers_23938 n=1 Tax=... 76 2e-12 UniRef50_B4U8H3 NADH-quinone oxidoreductase subunit B n=4 Tax=Ba... 76 2e-12 UniRef50_A3ETD3 Putative hydrogenase-3 (HycG) n=3 Tax=Leptospiri... 76 2e-12 UniRef50_Q3A825 NADH-quinone oxidoreductase subunit B/C/D n=103 ... 76 2e-12 UniRef50_B1ZRT2 NADH-quinone oxidoreductase subunit B 1 n=4 Tax=... 76 3e-12 UniRef50_C7NU23 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 76 3e-12 UniRef50_Q0RRW7 NADH-quinone oxidoreductase subunit B n=5 Tax=Ba... 76 3e-12 UniRef50_A4J659 NADH-quinone oxidoreductase subunit B n=34 Tax=F... 75 4e-12 UniRef50_D1B297 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 75 5e-12 UniRef50_D2EGC1 NADH-quinone oxidoreductase, B subunit n=1 Tax=C... 74 6e-12 UniRef50_B1ZUJ0 NADH-quinone oxidoreductase subunit B 2 n=13 Tax... 74 6e-12 UniRef50_Q3ZXS0 NADH-quinone oxidoreductase subunit B n=5 Tax=De... 74 6e-12 UniRef50_Q9DC70 NADH dehydrogenase [ubiquinone] iron-sulfur prot... 74 6e-12 UniRef50_C0QR84 NADH-quinone oxidoreductase chain b (Nadh dehydr... 74 8e-12 UniRef50_Q978D5 Formate hydrogenlyase subunit 2 n=2 Tax=Thermopl... 74 9e-12 UniRef50_B0SFT5 NADH-quinone oxidoreductase subunit B n=13 Tax=c... 74 1e-11 UniRef50_D2R5G9 NADH-quinone oxidoreductase, B subunit n=2 Tax=P... 74 1e-11 UniRef50_C7DI98 NADH-quinone oxidoreductase, B subunit n=1 Tax=C... 72 2e-11 UniRef50_Q2T5T7 Formate hydrogenlyase subunit 7 n=21 Tax=Bacteri... 72 2e-11 UniRef50_O75251 NADH dehydrogenase [ubiquinone] iron-sulfur prot... 72 2e-11 UniRef50_C9RJJ6 NADH-quinone oxidoreductase, B subunit n=1 Tax=F... 72 3e-11 UniRef50_A1RZ48 NADH-quinone oxidoreductase, B subunit n=3 Tax=T... 72 3e-11 UniRef50_B3QY47 NADH-quinone oxidoreductase subunit B 2 n=8 Tax=... 72 3e-11 UniRef50_Q492H7 NADH-quinone oxidoreductase subunit B n=225 Tax=... 72 3e-11 UniRef50_A8MBS9 NADH-quinone oxidoreductase, B subunit n=5 Tax=T... 72 4e-11 UniRef50_D2R6Y4 NADH-quinone oxidoreductase, B subunit n=1 Tax=P... 72 4e-11 UniRef50_B1KJU9 NADH-quinone oxidoreductase subunit B n=8 Tax=Pr... 71 7e-11 UniRef50_B0R3U2 NADH dehydrogenase-like complex subunit B n=11 T... 71 8e-11 UniRef50_C1VB41 NADH dehydrogenase subunit B n=1 Tax=Halogeometr... 71 8e-11 UniRef50_D2PJN5 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 71 9e-11 UniRef50_B5E8B5 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 71 9e-11 UniRef50_C1ZCK3 NADH dehydrogenase subunit B n=1 Tax=Planctomyce... 71 1e-10 UniRef50_A5FW47 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 70 2e-10 UniRef50_O21272 NADH-ubiquinone oxidoreductase 20 kDa subunit n=... 69 2e-10 UniRef50_A6DAC3 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 69 3e-10 UniRef50_A9G9S9 NADH-quinone oxidoreductase subunit B 2 n=2 Tax=... 69 3e-10 UniRef50_Q39SF9 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 68 6e-10 UniRef50_A5TDF9 NADH-quinone oxidoreductase, B subunit n=2 Tax=p... 68 6e-10 UniRef50_B5ZJ00 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 68 7e-10 UniRef50_Q0BSK3 NADH-quinone oxidoreductase subunit B n=31 Tax=c... 67 7e-10 UniRef50_A0B811 F420H2 dehydrogenase subunit B n=6 Tax=Archaea R... 67 8e-10 UniRef50_B2V8R1 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 67 1e-09 UniRef50_A1SQ82 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 67 1e-09 UniRef50_A8A9X3 NADH-quinone oxidoreductase, B subunit n=1 Tax=I... 66 2e-09 UniRef50_A4WJL4 NADH-quinone oxidoreductase, B subunit n=6 Tax=T... 66 3e-09 UniRef50_B9SD17 NADH-ubiquinone oxidoreductase I subunit j, puta... 65 3e-09 UniRef50_B9L626 NADH-ubiquinone oxidoreductase 20 kDa subunit n=... 65 3e-09 UniRef50_A7I7C9 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 65 5e-09 UniRef50_A4YGN5 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 65 5e-09 UniRef50_Q64DY8 F420H2-quinone oxidoreductase 45 kD subunit n=8 ... 64 6e-09 UniRef50_A5FW77 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 63 1e-08 UniRef50_Q58136 Uncharacterized protein MJ0726 n=3 Tax=Methanoca... 62 3e-08 UniRef50_Q5FU78 Putative uncharacterized protein n=1 Tax=Glucono... 61 5e-08 >UniRef50_D0ZEI9 Hydrogenase-1 small subunit n=1 Tax=Edwardsiella tarda EIB202 RepID=D0ZEI9_EDWTE Length = 471 Score = 441 bits (1135), Expect = e-122, Method: Composition-based stats. Identities = 354/373 (94%), Positives = 364/373 (97%), Gaps = 1/373 (0%) Query: 1 MNNEETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGL 60 MNNE+TFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGL Sbjct: 99 MNNEDTFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGL 158 Query: 61 ECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAV 120 ECTCCTESFIRS+HPLAKDVILSLISLDYDDTLMAAAGTQAE VF+DIIT+Y+GKYILAV Sbjct: 159 ECTCCTESFIRSSHPLAKDVILSLISLDYDDTLMAAAGTQAEAVFDDIITRYHGKYILAV 218 Query: 121 EGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPID 180 EGNPPLGEQGMFCISSGRPFIEKLK+AAAGASAIIAWGTCASWGCVQAARPNPTQATPID Sbjct: 219 EGNPPLGEQGMFCISSGRPFIEKLKKAAAGASAIIAWGTCASWGCVQAARPNPTQATPID 278 Query: 181 KVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAH 240 KVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAH Sbjct: 279 KVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAH 338 Query: 241 FDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAEN 300 FDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGC+EN Sbjct: 339 FDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCSEN 398 Query: 301 GFWDRGSFYSRVVDIPQMGTHSTADTVGLTALGVVAAAVGVHAVASAVDQRRRHN-QQPT 359 GFWDRGSFYSRVVDIPQMGTHSTADTVGLTALGVVAA VGVHAVASAV+QR+RHN Q Sbjct: 399 GFWDRGSFYSRVVDIPQMGTHSTADTVGLTALGVVAAGVGVHAVASAVNQRKRHNQQLAE 458 Query: 360 ETEHQPGNEDKQA 372 + QPGNEDKQA Sbjct: 459 AEQQQPGNEDKQA 471 >UniRef50_C1DUF2 Quinone-reactive Ni/Fe-hydrogenase small chain (Membrane-bound hydrogenase small subunit) (Hydrogen:quinoneoxidoreductase) n=3 Tax=Bacteria RepID=C1DUF2_SULAA Length = 416 Score = 419 bits (1076), Expect = e-116, Method: Composition-based stats. Identities = 146/353 (41%), Positives = 211/353 (59%), Gaps = 6/353 (1%) Query: 7 FYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCT 66 F + + ++RR F K+ S+ +L L P +A A E R+PV+WI+ +C T Sbjct: 56 FDEYLSMWDISRRDFFKWVSMMTATLMLPPSFEPLVAQAAEVMNRVPVIWINIQDCDGNT 115 Query: 67 ESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPL 126 E+ IRS+ P ++IL +S++Y +TLMAAAG QAE+ ED + + G+Y+L VEG+ P+ Sbjct: 116 EALIRSSAPTVDELILDYLSIEYQETLMAAAGDQAEKCLEDAVKTFKGQYLLFVEGSIPV 175 Query: 127 GEQGMFCISSG-RPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITD 185 + F +++++R A A A+IA G CAS+G V AA PNPT A + V++ Sbjct: 176 KMEYAFTTGRHPETGVQRVRRLAKDAKAVIAVGACASFGGVPAAYPNPTGAVGVMDVVSG 235 Query: 186 KPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGE 245 P++ +P CP P + +I + V LP++D + RP +G RIHD C RRAHFDAGE Sbjct: 236 VPVVNIPACPANPVNIVGVIMHYVLTGSLPELDSLKRPKFAFGYRIHDNCERRAHFDAGE 295 Query: 246 FVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDR 305 FV+ W D+ A+ +CLYKMGCKGP T+N CS R+NDG ++PI G GC+GC+E FWD+ Sbjct: 296 FVEEWGDEGAKNNFCLYKMGCKGPFTFNNCSIVRYNDGTNWPIGVGRGCIGCSEPDFWDK 355 Query: 306 GS---FYSRVVDIPQ--MGTHSTADTVGLTALGVVAAAVGVHAVASAVDQRRR 353 + + P G ST D VGLT L A +G HAV SA+ ++ Sbjct: 356 YATERPVAASDIRPPAIGGVESTVDKVGLTILTATAIGIGAHAVMSALAGKKE 408 >UniRef50_B0TDW1 Uptake [ni/fe] hydrogenase small subunit n=11 Tax=Bacteria RepID=B0TDW1_HELMI Length = 395 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 191/363 (52%), Positives = 256/363 (70%), Gaps = 3/363 (0%) Query: 1 MNNEETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGL 60 M ++++FYQ +R +GV+RR F+K+C++ A SLGL G A IA ALE K R+PV+W + Sbjct: 25 MASQDSFYQYLRNRGVSRRDFIKFCTVMAASLGLEPGAAGAIAEALETKRRMPVIWRNFQ 84 Query: 61 ECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAV 120 ECTCCTESFIR+ HP A D+I+++ISLDY +TLM AAG QAEE I G YILAV Sbjct: 85 ECTCCTESFIRTQHPKASDIIMTMISLDYHETLMVAAGHQAEEAVAKAIEDNRGNYILAV 144 Query: 121 EGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPID 180 EG P+ + G++C +GR ++ LK A A AIIAWG+CA GCVQAA PNPT A P+ Sbjct: 145 EGAIPVKDGGIYCCIAGRTAVDMLKEEAKHAKAIIAWGSCAVNGCVQAANPNPTGAVPVQ 204 Query: 181 KVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAH 240 +I DKPII VPGCP I +VM+ +IT+++TF+RLP++D GRP FYG RIHDKC RRA+ Sbjct: 205 DIIKDKPIINVPGCPAIAEVMAGVITHVLTFERLPELDSQGRPKAFYGHRIHDKCNRRAY 264 Query: 241 FDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAEN 300 FDAG FV+++DD A++G+CLYK+GCKGP TYN+CS+ WN G+S+PI+SGH C+GC+E Sbjct: 265 FDAGMFVENFDDQGAKEGWCLYKLGCKGPNTYNSCSNLEWNGGLSYPIKSGHPCIGCSEF 324 Query: 301 GFWDR---GSFYSRVVDIPQMGTHSTADTVGLTALGVVAAAVGVHAVASAVDQRRRHNQQ 357 GFWD S Y+ + ++P + D G A+G A VHA SAV +++ Q+ Sbjct: 325 GFWDNTGGTSMYAHLSEVPGLKIGVNVDAFGAAAVGAAIAGAAVHAGLSAVTKKQMDRQE 384 Query: 358 PTE 360 + Sbjct: 385 NEK 387 >UniRef50_O33405 Uptake hydrogenase small subunit n=221 Tax=Bacteria RepID=MBHS_OLICO Length = 360 Score = 415 bits (1066), Expect = e-114, Method: Composition-based stats. Identities = 231/327 (70%), Positives = 276/327 (84%) Query: 1 MNNEETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGL 60 M ETFY+ MRRQGVTRRSFLK+CSL AT+LGLG +IA A+E KPR PV+W+HGL Sbjct: 1 MTPTETFYEVMRRQGVTRRSFLKFCSLTATALGLGPAYTSEIAHAMETKPRTPVLWLHGL 60 Query: 61 ECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAV 120 ECTCC+ESFIRSAHPL KDV+LS+ISLDYDDTLMAAAG QAE D I +Y G YILAV Sbjct: 61 ECTCCSESFIRSAHPLVKDVVLSMISLDYDDTLMAAAGHQAEAALADTIERYKGNYILAV 120 Query: 121 EGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPID 180 EGNPPL E GMFCI G+PF+++L+ AA A AII+WG+CAS GCVQAARPNPT+ATP+ Sbjct: 121 EGNPPLNEDGMFCIIGGKPFVDQLRYAAKHAKAIISWGSCASHGCVQAARPNPTRATPVH 180 Query: 181 KVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAH 240 +VITDKPIIKVPGCPPI +VM+ +ITYM+TF +LP++DR GRP MFY QRIHDKCYRR H Sbjct: 181 QVITDKPIIKVPGCPPIAEVMTGVITYMLTFGKLPELDRTGRPKMFYSQRIHDKCYRRPH 240 Query: 241 FDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAEN 300 FDAG+FV+S+DD+ AR+GYCLYK+GCKGPTTYNACS+ RWN+G SFPIQ+GHGC+GC+E Sbjct: 241 FDAGQFVESFDDEGARRGYCLYKVGCKGPTTYNACSTIRWNEGTSFPIQAGHGCIGCSEE 300 Query: 301 GFWDRGSFYSRVVDIPQMGTHSTADTV 327 GFWD+GS+Y+R+ DI Q G + AD + Sbjct: 301 GFWDKGSWYARLQDIHQFGIEANADQI 327 >UniRef50_P12635 Uptake hydrogenase small subunit n=8 Tax=Bacteria RepID=MBHS_BRAJA Length = 363 Score = 411 bits (1056), Expect = e-113, Method: Composition-based stats. Identities = 235/328 (71%), Positives = 276/328 (84%) Query: 2 NNEETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLE 61 ETFY +RRQG+TRRSF K+CSL ATSLGLG A +IA ALE KPR+PV+W+HGLE Sbjct: 3 AATETFYSVIRRQGITRRSFHKFCSLTATSLGLGPLAASRIANALETKPRVPVIWMHGLE 62 Query: 62 CTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVE 121 CTCC+ESFIRSAHPL KD +LS+ISLDYDDT+MAAAG QAE + E+ ++ G+YILAVE Sbjct: 63 CTCCSESFIRSAHPLVKDAVLSMISLDYDDTIMAAAGHQAEAILEETRAKHKGQYILAVE 122 Query: 122 GNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDK 181 GNPPL E GMFCI G+PF+EKLK A A AIIAWG CASWGCVQAA+PNPTQATPIDK Sbjct: 123 GNPPLNEGGMFCIDGGKPFVEKLKMMAEDAMAIIAWGACASWGCVQAAKPNPTQATPIDK 182 Query: 182 VITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHF 241 VIT+KPIIKVPGCPPI +VM+ ++T++ TF +LP++DR GRP MFY QRIHDKCYRR HF Sbjct: 183 VITNKPIIKVPGCPPIAEVMTGVVTFITTFGKLPELDRQGRPKMFYSQRIHDKCYRRPHF 242 Query: 242 DAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENG 301 DAG+FV+ WDD+AARKGYCLYKMGCKGPTTYNACS+ RWN GVSFPIQSGHGC+GC+E+G Sbjct: 243 DAGQFVEEWDDEAARKGYCLYKMGCKGPTTYNACSTVRWNGGVSFPIQSGHGCIGCSEDG 302 Query: 302 FWDRGSFYSRVVDIPQMGTHSTADTVGL 329 FWD+GSFY R+ +I Q G AD +G+ Sbjct: 303 FWDKGSFYDRLTNIKQFGIEKNADQIGM 330 >UniRef50_C3XGH6 Ni/Fe-hydrogenase small subunit n=8 Tax=Proteobacteria RepID=C3XGH6_9HELI Length = 425 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 146/357 (40%), Positives = 209/357 (58%), Gaps = 11/357 (3%) Query: 2 NNEETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLE 61 + + + ++ +G+ RR F+K+ ++ S+GL A AP A A E R+P++W+H E Sbjct: 70 KSGKDLNEVLQEKGIQRRDFMKWAAVVTASIGLPATFAPLTARAAELADRVPIIWLHMAE 129 Query: 62 CTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVE 121 CT C+ES +RS P +I +S++Y +T+MAA+G QAE+ ED + +Y+G+Y++ VE Sbjct: 130 CTGCSESLLRSEDPCIDSIIFDYVSMEYHETIMAASGYQAEKSLEDAVKKYDGRYVMMVE 189 Query: 122 GNPPLGEQGMFCISS--GRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPI 179 G P + F GR E+ + A A+AI A GTC+S+G VQAA PNPT A P+ Sbjct: 190 GGIP-KDTEYFLTIGASGRTGAEECRHVAKHAAAIFAIGTCSSFGGVQAAAPNPTNAHPL 248 Query: 180 DKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRA 239 +I DK +I VPGCPP + + + F + +D RP YG RIHD C RR Sbjct: 249 SDII-DKKVINVPGCPPNEKNIVGTLMQHILFGDM-ALDAFHRPKWAYGHRIHDLCERRG 306 Query: 240 HFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAE 299 FDAGEFVQ + D+ A+ GYCLYK+GCKGP T+N CS R+N ++PI +GHGC+GC+E Sbjct: 307 RFDAGEFVQHFGDENAKNGYCLYKVGCKGPYTFNNCSKLRFNSHTNWPIGAGHGCIGCSE 366 Query: 300 NGFWDRGSFYSRVVD------IPQMGTHSTADTVGLTALGVVAAAVGVHAVASAVDQ 350 FWD S + + G TAD VG+ LG A + HA+ S + Sbjct: 367 PHFWDTMSPFEVPLGNRYQTAFRGAGADHTADRVGMVILGATAIGIAAHAMLSGAIK 423 >UniRef50_D1BNB1 Hydrogenase (NiFe) small subunit HydA n=5 Tax=Veillonellaceae RepID=D1BNB1_VEIPT Length = 379 Score = 406 bits (1044), Expect = e-112, Method: Composition-based stats. Identities = 186/371 (50%), Positives = 245/371 (66%), Gaps = 3/371 (0%) Query: 1 MNNEETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGL 60 +N+ T +Q R ++RR+F+K C LGL M A E V+W+HG Sbjct: 5 INSLWTLFQERR---LSRRTFMKSCVALTAILGLPPTMLDTFVKAAETTELPTVIWLHGH 61 Query: 61 ECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAV 120 ECT C+ESFIRS+ P DVIL++ISL+YDDTL AA+G EE E II + GKYILAV Sbjct: 62 ECTGCSESFIRSSSPFTSDVILNMISLEYDDTLAAASGAPLEEHLEKIIKEKAGKYILAV 121 Query: 121 EGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPID 180 EG PL E G++C GR F E L AA GA+AII +G+CASWG +QAA+PNPT + Sbjct: 122 EGGVPLDEDGVYCTVGGRTFKESLLEAAKGAAAIIEYGSCASWGGIQAAKPNPTNTVSVS 181 Query: 181 KVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAH 240 V++ KPIIKVPGCPPIP+VM+ +I + F ++P +D GRP FYG RIHD CYRRA Sbjct: 182 SVVSGKPIIKVPGCPPIPEVMTGVIMHYALFGQIPPLDSQGRPKQFYGNRIHDTCYRRAF 241 Query: 241 FDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAEN 300 FD+G FV+ +DDDA++ G+CLYK+GC+GP TYN+C + RW +G+S+PIQSGHGC+GC+E Sbjct: 242 FDSGLFVEKFDDDASKSGWCLYKVGCRGPQTYNSCGNLRWWNGLSYPIQSGHGCIGCSEK 301 Query: 301 GFWDRGSFYSRVVDIPQMGTHSTADTVGLTALGVVAAAVGVHAVASAVDQRRRHNQQPTE 360 GFWD FY R+ DIP T +TADT+G A AAV VH A+ + ++ Sbjct: 302 GFWDNDVFYKRLPDIPLANTITTADTIGTVAAVGATAAVIVHGAATLTRNKILDMKEEKR 361 Query: 361 TEHQPGNEDKQ 371 + Q ++K+ Sbjct: 362 LKEQGLWDEKK 372 >UniRef50_Q3ABV6 [Ni/Fe] hydrogenase, small subunit n=3 Tax=Clostridia RepID=Q3ABV6_CARHZ Length = 354 Score = 394 bits (1013), Expect = e-108, Method: Composition-based stats. Identities = 128/348 (36%), Positives = 192/348 (55%), Gaps = 14/348 (4%) Query: 13 RQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALE--NKPRIPVVWIHGLECTCCTESFI 70 ++RR FLK+ S A +LGL + P++A+ALE K + PV+WI G CT C+ S + Sbjct: 1 MNKISRREFLKFASFTAATLGLSQSV-PEVAYALENAAKGQPPVIWIQGASCTGCSVSLL 59 Query: 71 RSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQG 130 S HP K+++L +I+L + + AA G A E F + GK+ L VEG P + G Sbjct: 60 NSVHPDIKEILLEIINLKFHPNISAATGHVAVEAFLGEAEKNKGKFFLVVEGAVPTKDNG 119 Query: 131 MFCISSGRP-----FIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITD 185 ++C + F E +K A A+IA GTCA++G + AA PNPT P+ +VI Sbjct: 120 VYCSIGEKDGRELYFSEVVKELGEKAKAVIAIGTCAAFGGIPAADPNPTGCVPVTEVIDP 179 Query: 186 KPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGE 245 K ++ +PGCPP PD + +++ ++ LP D+ GRP MFY IHD C RR +FD Sbjct: 180 KKVLNIPGCPPHPDWFVGSLAHVLLYNELPKTDKFGRPKMFYEGIIHDNCPRRQYFDNSI 239 Query: 246 FVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDR 305 F + + + CL +GCKGP T++ C + WN GV++ I++GH C+GC E GF D+ Sbjct: 240 FAKDFSEPG-----CLLLLGCKGPVTHSDCPTRLWNGGVNWCIKAGHPCIGCTEPGFPDK 294 Query: 306 GSF-YSRVVDIPQMGTHSTADTVGLTALGVVAAAVGVHAVASAVDQRR 352 Y ++ +I G ++ADT G A +G H + + R Sbjct: 295 TGPIYEKMPEIKLPGISASADTFGEVVGAATAIGLGAHLIGNIATGRL 342 >UniRef50_A7BI79 Ni,Fe-hydrogenase small subunit n=2 Tax=Aquificaceae RepID=A7BI79_HYDTH Length = 345 Score = 394 bits (1012), Expect = e-108, Method: Composition-based stats. Identities = 165/352 (46%), Positives = 221/352 (62%), Gaps = 7/352 (1%) Query: 4 EETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECT 63 E+ Y RR+G TRR FLK L + LG + ALE KP+ V+W+ +C Sbjct: 1 MESLYHIYRRRGYTRRDFLKSVLLLSAVLGFPPTSFGQAVKALELKPKPVVIWLEFQDCA 60 Query: 64 CCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGN 123 CTESFIRS L DV+L ISL+Y +TLM+ +G AEE + I +Y GKYIL VEG+ Sbjct: 61 GCTESFIRSTSILPSDVLLDYISLEYHETLMSPSGFYAEEAKREAIEKYKGKYILIVEGS 120 Query: 124 PPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVI 183 +G++C SG+ +E LK AA A +IA G+CASWG + A PNPT A P+ +++ Sbjct: 121 VSPRNKGVYCTVSGKSNVELLKEAAQNAGLVIAVGSCASWGGIPHAEPNPTGAVPVSQIL 180 Query: 184 TDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDA 243 D+ ++ +PGCPPI DVM A+I V + P++D MGRP FYGQ IHD+CYRR ++A Sbjct: 181 GDRQVVNIPGCPPISDVMVAVIAGFVITGKPPELDSMGRPKTFYGQTIHDRCYRRPFYNA 240 Query: 244 GEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFW 303 G+ S+DD++ARKGYCLYK+GCKGP T NAC++ RWN G+SFPIQSGH C GC+E FW Sbjct: 241 GKLAGSFDDESARKGYCLYKLGCKGPITRNACATIRWNGGLSFPIQSGHPCFGCSEPNFW 300 Query: 304 DRGSFYSRVVDIPQMGTHSTADTVGLTALGVVAAAVGVHAVASAVDQRRRHN 355 DRG YS P G+ L VA V + A ++A++++ R Sbjct: 301 DRGFIYS-----PLSVVEGGFGWKGI--LAGVATGVALGAASAAINKKFREK 345 >UniRef50_P31884 Quinone-reactive Ni/Fe-hydrogenase small chain n=12 Tax=Bacteria RepID=MBHS_WOLSU Length = 354 Score = 389 bits (999), Expect = e-107, Method: Composition-based stats. Identities = 157/354 (44%), Positives = 209/354 (59%), Gaps = 10/354 (2%) Query: 11 MRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFI 70 + +G+ RR F+K+ L L A P A A E R+PV+W+H ECT C+ES + Sbjct: 2 LEEKGIERRDFMKWAGAMTAMLSLPATFTPLTAKAAELADRLPVIWLHMAECTGCSESLL 61 Query: 71 RSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQG 130 R+ P +I ISL+Y +T+MAAAG QAE E I +Y G+Y+L VEG P G Sbjct: 62 RTDGPGIDSLIFDYISLEYHETVMAAAGWQAEHNLEHAIEKYKGRYVLMVEGGIPAGSSE 121 Query: 131 MFCISS--GRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI 188 + G E + A+A A+AI A G+C+S+G VQAARPNPT A P+ KV T+KP+ Sbjct: 122 FYLTVGPHGTTGAEHARHASANAAAIFAIGSCSSFGGVQAARPNPTNAQPLSKV-TNKPV 180 Query: 189 IKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQ 248 I VPGCPP + + + + F LP VD RP+ YG RIHD C RR FDAGEFVQ Sbjct: 181 INVPGCPPSEKNIVGNVLHFILFGTLPSVDAFNRPMWAYGLRIHDLCERRGRFDAGEFVQ 240 Query: 249 SWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGSF 308 + D+ A+KGYCLYK+GCKGP T+N CS R+N S+P+Q+GHGC+GC+E FWD Sbjct: 241 EFGDEGAKKGYCLYKVGCKGPYTFNNCSKLRFNQHTSWPVQAGHGCIGCSEPDFWDTMGP 300 Query: 309 YSRVVDIP-------QMGTHSTADTVGLTALGVVAAAVGVHAVASAVDQRRRHN 355 + V +G TAD +G+T L A V HAV S + + + +N Sbjct: 301 FEEPVANRLYATAFDGLGADKTADKIGITLLAATAVGVAAHAVLSMMVKDKENN 354 >UniRef50_C6NZV2 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Proteobacteria RepID=C6NZV2_9PROT Length = 371 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 145/308 (47%), Positives = 206/308 (66%), Gaps = 1/308 (0%) Query: 5 ETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTC 64 T + + ++G++RR FL++C+ A L L MA +A A+ R V+W+ ECT Sbjct: 12 GTVGEGLAQRGISRREFLQFCTSLAALLALPPSMASVMAEAISKARRQSVIWLSFQECTG 71 Query: 65 CTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNP 124 CTES RS P + +I +ISLDY TL AA+G AE + GKY++ V+G+ Sbjct: 72 CTESITRSHSPTLESLIFEMISLDYHHTLQAASGEAAEHARLQAMKDNEGKYLVIVDGSI 131 Query: 125 PLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVIT 184 P+G G + +G + L A GA+AI+A GTCA++G + A PNPT A P+ ++ Sbjct: 132 PMGNPG-YSAIAGISNHDMLVETAKGAAAIVAVGTCATYGGIPMADPNPTGAVPVSDIVK 190 Query: 185 DKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAG 244 DKPII VPGCPPIP VM+ ++ + +TF +P++D +GRP FYG+ IHD+CYRR +D G Sbjct: 191 DKPIINVPGCPPIPVVMTGVLAHFLTFGGIPELDALGRPKSFYGETIHDRCYRRPFYDQG 250 Query: 245 EFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWD 304 +F +++DD+AAR G+CL+K+GCKGP TYNAC++T+WNDG SFPI+SGHGC+GC+E FWD Sbjct: 251 KFAETFDDEAARNGWCLFKLGCKGPVTYNACATTKWNDGTSFPIESGHGCIGCSEPKFWD 310 Query: 305 RGSFYSRV 312 G FY + Sbjct: 311 AGPFYKAL 318 >UniRef50_A8LH34 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Frankia sp. EAN1pec RepID=A8LH34_FRASN Length = 400 Score = 384 bits (987), Expect = e-105, Method: Composition-based stats. Identities = 153/373 (41%), Positives = 220/373 (58%), Gaps = 10/373 (2%) Query: 3 NEETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLEC 62 + + GV RRSFLK+C+ +L L A +AP++A+AL+ R V+W+ +C Sbjct: 5 SGRPLSARLADAGVDRRSFLKFCAGITATLALPAQLAPRVAYALDKVDRPTVIWLEFQDC 64 Query: 63 TCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEG 122 +E+F+RS +P A D+IL +ISLDY +T+MAA+GT AE+ +D + G +++ VEG Sbjct: 65 AGDSEAFLRSRNPSAADLILGMISLDYHETVMAASGTAAEKARDDAVA--KGGHLVVVEG 122 Query: 123 NPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKV 182 + P G G C G+ + L+ A GA+ II GTC+++G + AA PNPT A ++ V Sbjct: 123 SIPTGIPG-ACTIGGKSAEDILREAVRGAAGIINVGTCSAFGGIPAAGPNPTGAVRVEDV 181 Query: 183 ITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFD 242 + P++ + GCP D ++A I + +TF P DR RPL YGQRIHD C RR HFD Sbjct: 182 VGGVPVVNLTGCPVNADNLTATIVHHLTFGEFPARDRFSRPLFAYGQRIHDTCQRRGHFD 241 Query: 243 AGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGF 302 AGEF + W D R G+CLY++GCKGP+T++ C S R+N G S+P+ +GHGC+GC+E GF Sbjct: 242 AGEFAEQWGDAGHRNGWCLYRLGCKGPSTFHNCPSVRFNGGTSWPVAAGHGCVGCSEPGF 301 Query: 303 WDRGSFYS-RVVDIPQMGTHSTADTVGLTALGVVAAAVGVHAVASAVDQR---RRHNQQP 358 WD S + R+ + G TAD +G+ L A H V V R RR Q Sbjct: 302 WDTMSPFYDRLPHVATSGFDLTADRIGVGVLAATATGFAAHGVGKVVQHRVAARREKQAA 361 Query: 359 ---TETEHQPGNE 368 E + P +E Sbjct: 362 RDLVEDDEAPTDE 374 >UniRef50_C2KSS0 Hydrogenase (Acceptor) n=3 Tax=Bacteria RepID=C2KSS0_9ACTO Length = 423 Score = 381 bits (978), Expect = e-104, Method: Composition-based stats. Identities = 142/352 (40%), Positives = 217/352 (61%), Gaps = 14/352 (3%) Query: 4 EETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMA----------PKIAWALENKPRIP 53 E T + + + GV+RR F+K+CS A +G + IA L + Sbjct: 25 EGTLAENIAKAGVSRRDFMKFCSSLAAIFAVGTPVMANAKALRPSTEHIAKVLGEVKKPL 84 Query: 54 VVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYN 113 V W+ ECT C ES +RS ++V+L+L+S++Y++ +MAA+G AE+ E++ Sbjct: 85 VAWLQLQECTGCMESTLRSGGTTVEEVVLNLLSVNYNELVMAASGEAAEKALEEV---NA 141 Query: 114 GKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNP 173 +IL V G+ P+ + G++C G+ + L+ +A AS I+A G CA +G VQAARPNP Sbjct: 142 QDHILVVNGSIPVKDGGIYCTIGGKSAQQVLEESAENASMILAVGACAVYGSVQAARPNP 201 Query: 174 TQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHD 233 T A +D++I DKP+I V GCPPI +V++A + Y++T + P++D GRPL YGQRIHD Sbjct: 202 TGAVGVDEIIKDKPVINVAGCPPIGEVITATLAYILTKGKAPELDAEGRPLFAYGQRIHD 261 Query: 234 KCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHG 293 C RR HFDAG+FV+++DD AR+G+CLY +GCKGP+T++ C +WN +PI +GH Sbjct: 262 SCPRRPHFDAGQFVRTFDDAGAREGWCLYDVGCKGPSTFSPCPIVQWNLKSGWPIGAGHP 321 Query: 294 CLGCAENGFWDRGSFYS-RVVDIPQMGTHSTADTVGLTALGVVAAAVGVHAV 344 C+GC E F+DR + + ++ ++ G +TA+ +G +VA V VHA Sbjct: 322 CIGCTERDFYDRFTPFYSKLPNVTGFGIEATAEQIGWGMTALVAGGVAVHAG 373 >UniRef50_A6DCC1 NI/FE-HYDROGENASE SMALL SUBUNIT n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DCC1_9PROT Length = 369 Score = 379 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 131/315 (41%), Positives = 201/315 (63%), Gaps = 4/315 (1%) Query: 1 MNNEETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGL 60 ++ ++ + + +G++RR FLK+ S+ LGL P +A ++ +IPV+W++ Sbjct: 15 LSPDKNIEKILEVEGISRRDFLKWVSVTTAMLGLPGFFEPLVAQSINALNKIPVIWMNYQ 74 Query: 61 ECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAV 120 +C +ES +R++ P ++I++LISL++ + LMA +GTQAE E+ I Y G+Y+L V Sbjct: 75 DCAGNSESILRASKPTIDEIIINLISLEFHELLMAPSGTQAENQLEETIQNYEGEYLLFV 134 Query: 121 EGNPPLGEQGMFCISS--GRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATP 178 EG+ PL + G++ G + + L R A+ A AIIA G CAS+G V AA PNPT AT Sbjct: 135 EGSIPLADNGVYGTIGPSGETYKDHLLRLASKAKAIIAVGNCASFGGVVAANPNPTGATG 194 Query: 179 IDKVIT-DKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYR 237 + V + PII +P CP P+ M ++ LP++D + RPL Y RIHD+C R Sbjct: 195 VMGVDGINVPIINLPACPVNPETMIGVLIMYALTGELPELDSLKRPLFAYASRIHDRCER 254 Query: 238 RAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGC 297 R HFDAGEFV+S+ D+A++ GYCLYK+GCKGP T+N C + ++ND S+P+ +GHGC+GC Sbjct: 255 RVHFDAGEFVESFGDNASQSGYCLYKVGCKGPFTFNNCPTVKFND-TSWPVDAGHGCIGC 313 Query: 298 AENGFWDRGSFYSRV 312 +E GF D+ + + Sbjct: 314 SEPGFVDKFGSFEKP 328 >UniRef50_A7NNQ8 Hydrogenase (NiFe) small subunit HydA n=12 Tax=Bacteria RepID=A7NNQ8_ROSCS Length = 417 Score = 377 bits (969), Expect = e-103, Method: Composition-based stats. Identities = 134/323 (41%), Positives = 192/323 (59%), Gaps = 2/323 (0%) Query: 7 FYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCT 66 + + +GV+RR FLK+C+ + +L L + P+IA AL R+PVVW+ +C T Sbjct: 8 LEERLAARGVSRRQFLKFCAAMSAALALPSTFTPRIARALNTAERLPVVWLEFQDCAGNT 67 Query: 67 ESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPL 126 ESF+R+ P D++L ISL+Y +T+MA AG +AE + ++ Y G+YI VEG+ P+ Sbjct: 68 ESFLRAESPGVADIVLEQISLEYHETIMAPAGHRAEHSLDAVVENYPGQYIAIVEGSIPI 127 Query: 127 GEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITD- 185 G++C GR + +R + A A IA G CA G AA PNPT A + + + Sbjct: 128 ANGGVYCTIGGRTALSIAERVCSNALATIAVGACAWDGGWPAASPNPTGAVGVRQAVPGL 187 Query: 186 KPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGE 245 K +I +PGCP ++A+I + +TF +LP D GRP YGQ IH+ C RR HFD+G Sbjct: 188 KNLINLPGCPMNVINLTAVIVHYLTFKQLPATDEQGRPFFAYGQLIHNNCERRGHFDSGR 247 Query: 246 FVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDR 305 FV+ W D+ R G+CLYKMGCKGP T + C + WN +PI +GHGC+GC FWD Sbjct: 248 FVERWGDEGHRLGWCLYKMGCKGPQTLSNCPAVGWNGTSYWPIGAGHGCVGCMSPRFWDT 307 Query: 306 GSFYS-RVVDIPQMGTHSTADTV 327 S + R+ ++ G TADT+ Sbjct: 308 MSPFYERLPNVEGFGIEVTADTL 330 >UniRef50_Q06173 Periplasmic [NiFe] hydrogenase small subunit 1 n=17 Tax=Bacteria RepID=PHNS1_DESVH Length = 317 Score = 374 bits (959), Expect = e-102, Method: Composition-based stats. Identities = 125/309 (40%), Positives = 188/309 (60%), Gaps = 4/309 (1%) Query: 5 ETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTC 64 E + + R+GV+RR FLK+C+ A ++G+G AP++A AL R VV++H ECT Sbjct: 10 EGAEERLARRGVSRRDFLKFCTAIAVTMGMGPAFAPEVARALTGSRRPSVVYLHNAECTG 69 Query: 65 CTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNP 124 C+ES +R+ P ++IL ISLDY +T+MAAAG AE + +G +I VEG Sbjct: 70 CSESVLRAFQPYLDELILDTISLDYHETIMAAAGDAAEAALHQAVANPDG-FICIVEGAI 128 Query: 125 PLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVIT 184 P + G++ + + A A+IA+GTCA++G VQAA+PNPT A ++ + Sbjct: 129 PTADNGIYGKVANHTMLSICSDIVPKAKAVIAYGTCATFGGVQAAKPNPTGAKGLNDALK 188 Query: 185 DKPI--IKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFD 242 + I + GCPP P + + Y + + P++D RPLMF+GQ +HD C R HFD Sbjct: 189 HLGVNAINLAGCPPNPYNLVGTLVYYLKNNAAPEMDEFNRPLMFFGQSVHDNCPRLKHFD 248 Query: 243 AGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGF 302 AGEF S++ + ARKG+CLY++GCKGP+T N C ++N ++P+++GH C+GC+E F Sbjct: 249 AGEFAPSFESEEARKGWCLYELGCKGPSTMNNCPKIKFNQ-TNWPVEAGHPCIGCSEPDF 307 Query: 303 WDRGSFYSR 311 WD S + Sbjct: 308 WDEKSPFYE 316 >UniRef50_B2UPQ9 Hydrogenase (NiFe) small subunit HydA n=8 Tax=Bacteria RepID=B2UPQ9_AKKM8 Length = 398 Score = 372 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 158/380 (41%), Positives = 232/380 (61%), Gaps = 14/380 (3%) Query: 3 NEETFYQAMRRQGVTRRSFLKYCSLAATSLGLGA-----GMAPKIAWALENKPRIPVVWI 57 ET + M R+GV+RR F K+C + +G+ A +IA + R V+W+ Sbjct: 19 PGETLGEHMERRGVSRREFNKWCLKMISLMGVATVTGGISNAQEIADKMAALKRPVVIWL 78 Query: 58 HGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYI 117 ECT C ES IRS + D++LS +S+ Y + LMA +G A + ED I + +I Sbjct: 79 QLQECTGCLESTIRSYNEEIGDMVLSAVSMPYVELLMAPSGEAANQALEDAIREP---HI 135 Query: 118 LAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQAT 177 L + G+ P+ + G++C +G L+ A AS I+A G+CA +G +QAARPNPT A Sbjct: 136 LVINGSVPVNDGGVYCTVAGDTVENMLRHCAENASHILAVGSCAYFGSIQAARPNPTGAV 195 Query: 178 PIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYR 237 I ++TD+ +I VPGCPPI DV++A+I Y++TFDR P+ D RPLM YG RIH+ C R Sbjct: 196 GIRDILTDRTVINVPGCPPIGDVITAVIMYILTFDRAPECDLESRPLMAYGTRIHNNCPR 255 Query: 238 RAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGC 297 RAHFDAG+FV +DD+ AR+ +CLYK+GCKGP T++ C +WN GVSFPIQSGH C+GC Sbjct: 256 RAHFDAGQFVNVFDDENARECFCLYKVGCKGPDTFSPCPIVKWNGGVSFPIQSGHPCIGC 315 Query: 298 AENGFWDRGSFYSR-VVDIPQMGTHSTADTVGLTALGVVAAAVGVHAVASAVDQRRRHNQ 356 E F+DR + + + + ++ G ++A+ +G + AA+ HAV SA+ R++H + Sbjct: 316 TELYFFDRMTPFYKTLPNVNGFGVEASANIIGAVGVAGAGAAIAAHAVGSAIHYRKQHMK 375 Query: 357 QPTET-----EHQPGNEDKQ 371 + PG+ DK+ Sbjct: 376 EEANVSLPAFGDAPGSPDKE 395 >UniRef50_A5GFC8 Hydrogenase (NiFe) small subunit HydA n=6 Tax=Proteobacteria RepID=A5GFC8_GEOUR Length = 378 Score = 371 bits (952), Expect = e-101, Method: Composition-based stats. Identities = 150/377 (39%), Positives = 214/377 (56%), Gaps = 17/377 (4%) Query: 1 MNNEETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGL 60 M EE F A GV+RRSF+K C A +GL M K+A A+E V+W+H Sbjct: 6 MKKEEDFLCA----GVSRRSFMKTCITATAMMGLPFSMHTKVAEAMEKNGNPSVIWLHFQ 61 Query: 61 ECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAV 120 ECT C+ES +RS HP +IL +ISLDY +TLMA +G QAE+ D + GKY+L V Sbjct: 62 ECTGCSESLLRSTHPTISTLILDMISLDYHETLMAGSGAQAEKSLHDSMLANKGKYLLVV 121 Query: 121 EGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPID 180 EG P E G++C G+ +E L+ AA+ A+AII+ GTCAS+G +Q+ PNPT A + Sbjct: 122 EGAIPTKESGIYCKVGGKTALESLQHAASNAAAIISIGTCASYGGIQSVGPNPTGAVGVR 181 Query: 181 KVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAH 240 ++ DKPII +PGCPP P + + + Y +TF ++P++D +GRP YG++IH+ C RR H Sbjct: 182 DIVKDKPIINIPGCPPSPYNLLSTVMYYLTFKKIPELDALGRPKFAYGRKIHEHCERRPH 241 Query: 241 FDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAEN 300 FDAG F +++ DD +GYCL+K+GCKGP TY CS R+N+ +P+ GH C+GC E Sbjct: 242 FDAGRFAKAYGDDTHAQGYCLFKLGCKGPATYANCSVQRFNEVGVWPVSVGHPCIGCTEP 301 Query: 301 GFWDRGS-----------FY--SRVVDIPQMGTHSTADTVGLTALGVVAAAVGVHAVASA 347 + + + VD+ + G T G L AA +A Sbjct: 302 DVLFKMAIADKVQIHEPTPFDSYAPVDLKEKGKGPEPLTTGFVGLAAGAALGAGAMLAKK 361 Query: 348 VDQRRRHNQQPTETEHQ 364 + + H + E + Sbjct: 362 LPKDDGHKEDDHHEEQE 378 >UniRef50_C0QEJ1 HynB n=4 Tax=Deltaproteobacteria RepID=C0QEJ1_DESAH Length = 330 Score = 361 bits (927), Expect = 2e-98, Method: Composition-based stats. Identities = 125/313 (39%), Positives = 184/313 (58%), Gaps = 7/313 (2%) Query: 2 NNEETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKP---RIPVVWIH 58 E++FY+ + +GV+RR FLKYC++ S+GL A ++A ++E R VVW+H Sbjct: 20 TEEKSFYERLEGKGVSRRDFLKYCTVMTASMGLSASCVGQVASSIEKAASGTRPSVVWLH 79 Query: 59 GLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYIL 118 ECT C+E+F+R+ P +IL IS++Y +T+MAA+G QAE+ E I + GK+I Sbjct: 80 FGECTGCSEAFLRT--PNVGAIILETISVEYHETIMAASGHQAEKSLEQAIKTHKGKFIC 137 Query: 119 AVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATP 178 VEG+ G + GR F+E A+ IA GTCA++G + +A PNP Sbjct: 138 VVEGSIATAYNGAYGKVGGRTFLEIANDVIPKAAVTIALGTCAAYGGIPSAAPNPGGYKG 197 Query: 179 IDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRR 238 + I I + GCPP P + + I + + + ++D +GRPL Y + +HD+C R Sbjct: 198 VKDAI-GVATINISGCPPNPLNLLSTIVKYLNKETI-ELDELGRPLFAYAETVHDRCPRL 255 Query: 239 AHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCA 298 HF+ EFV+ + A GYCLY MGCKGP TYN C + ++NDG SFPIQ+GH C+GC+ Sbjct: 256 KHFENDEFVEEFGSKEAELGYCLYHMGCKGPETYNNCPTAKFNDGTSFPIQAGHPCIGCS 315 Query: 299 ENGFWDRGSFYSR 311 E FWD + + Sbjct: 316 EPDFWDTMTPFYE 328 >UniRef50_B4U5S1 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U5S1_HYDS0 Length = 320 Score = 356 bits (914), Expect = 7e-97, Method: Composition-based stats. Identities = 159/314 (50%), Positives = 217/314 (69%), Gaps = 1/314 (0%) Query: 4 EETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECT 63 ET+Y + +GV R F+ + + LG+ I AL+ KPRIPV+W HGLECT Sbjct: 1 METYYDFLAGRGVRYREFISFSTKICGLLGINPNEINDIINALKQKPRIPVLWFHGLECT 60 Query: 64 CCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGN 123 CC+ES +RS+ P+ D++ SLISL+YDD + A+ G + II QY G YILA+EG+ Sbjct: 61 CCSESLMRSSSPVFSDMV-SLISLEYDDLISASCGENLLNYKKKIIEQYKGNYILAIEGS 119 Query: 124 PPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVI 183 E G C+ GR F E+L AA GA AIIAWG+CAS+GCVQ A PNPT+++ +D +I Sbjct: 120 ITEFEDGACCMVGGRSFNEELLEAAEGAKAIIAWGSCASFGCVQVAYPNPTKSSSVDTII 179 Query: 184 TDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDA 243 +KPI+KVPGCPPIP+VM+++I YM+ D LP +D RP MFYG IHD CYR+ ++A Sbjct: 180 KNKPIVKVPGCPPIPEVMASVIVYMLLKDELPPLDSKLRPKMFYGMTIHDTCYRKNFYNA 239 Query: 244 GEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFW 303 +F + +DD+ ++ G+CLYK+GCKGP+TYNACSS W +G+SFPI+SGHGC+GC++ GFW Sbjct: 240 NKFAERFDDEGSKAGHCLYKLGCKGPSTYNACSSIGWYNGLSFPIKSGHGCIGCSQEGFW 299 Query: 304 DRGSFYSRVVDIPQ 317 D+ + PQ Sbjct: 300 DKTMYKEEAPITPQ 313 >UniRef50_P13061 Periplasmic [NiFe] hydrogenase small subunit n=63 Tax=Proteobacteria RepID=PHNS_DESDA Length = 315 Score = 354 bits (908), Expect = 3e-96, Method: Composition-based stats. Identities = 126/310 (40%), Positives = 187/310 (60%), Gaps = 6/310 (1%) Query: 5 ETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTC 64 E + + RQG++RR F+K+C+ A ++G+G A +A AL R VV++H ECT Sbjct: 10 EGGEERLERQGISRRDFMKFCTAVAVAMGMGPAFATDVAAAL-TGRRPSVVYLHAAECTG 68 Query: 65 CTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNP 124 C+E+ +R+ P +IL ISLDY +T+MAAAG AEE + + +G +I VEG Sbjct: 69 CSEALLRTYQPFIDTLILDTISLDYHETIMAAAGEAAEEALQAAVNGPDG-FICLVEGAI 127 Query: 125 PLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVIT 184 P G + +G + K A A+++ GTCA +G +QAA+PNPT A I+ Sbjct: 128 PTGMDNKYGYIAGHTMYDICKNILPKAKAVVSIGTCACYGGIQAAKPNPTAAKGINDCYA 187 Query: 185 DKPI--IKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFD 242 D + I VPGCPP P M + + ++ ++D +GRP+MF+GQ +HD C RR HFD Sbjct: 188 DLGVKAINVPGCPPNPLNMVGTLVAFLKGQKI-ELDEVGRPVMFFGQSVHDLCERRKHFD 246 Query: 243 AGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGF 302 AGEF S++ + ARKG+CLY +GCKGP TYN C +N+ ++P+ +GH C+GC+E F Sbjct: 247 AGEFAPSFNSEEARKGWCLYDVGCKGPETYNNCPKVLFNE-TNWPVAAGHPCIGCSEPNF 305 Query: 303 WDRGSFYSRV 312 WD + + + Sbjct: 306 WDDMTPFYQN 315 >UniRef50_B8FWY3 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Desulfitobacterium hafniense RepID=B8FWY3_DESHD Length = 375 Score = 350 bits (898), Expect = 5e-95, Method: Composition-based stats. Identities = 98/349 (28%), Positives = 169/349 (48%), Gaps = 15/349 (4%) Query: 16 VTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKP--RIPVVWIHGLECTCCTESFIRSA 73 + RR FLK A + + P++ AL ++P++ + CT + S Sbjct: 2 LNRREFLKLVVKGAILGNFISLVTPELEKALAQGEINKLPIIMVETGTCTGDSISLDNIW 61 Query: 74 HPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFC 133 P D+ ++ YD T+M + G A +V +I +++L V+G+ + G + Sbjct: 62 SPTLSDIFTNITEWRYDWTMMQSQGELAYDVLLEIEKNQAHEFVLLVQGSMIRRDGGHYN 121 Query: 134 ISSGR-----PFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI 188 + ++ ++R A ++A G CA++G A PNPTQ+T + ++ ++ + Sbjct: 122 YAGLENGQLITGLDLVRRLGLKAKYVVAVGHCATYGGPVAGYPNPTQSTGVQNILPERRV 181 Query: 189 IKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQ 248 I V GCP PD + + ++ + P++++ GRP MF+G+ IH+ C RR ++D G F Sbjct: 182 INVSGCPAHPDWIMGTLLHLALYGE-PELEKFGRPKMFFGETIHNNCPRRRYYDQGIFAT 240 Query: 249 SWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGSF 308 CLY++GCKGP TY C RWND ++PI C+GC E G+ D Sbjct: 241 DIGQKE-----CLYRVGCKGPVTYADCPIRRWNDHYNWPIGCNSPCIGCTEPGYPDLMEP 295 Query: 309 Y-SRVVDIP-QMGTHSTADTVGLTALGVVAAAVGVHAVASAVDQRRRHN 355 + + DIP G+ + D +G LG+ +G + ++S R N Sbjct: 296 FTAHFPDIPFPGGSRAATDRIGRGVLGLATLGIGGYFLSSFYKGRLHRN 344 >UniRef50_D1U6F3 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U6F3_9DELT Length = 328 Score = 344 bits (883), Expect = 3e-93, Method: Composition-based stats. Identities = 130/319 (40%), Positives = 188/319 (58%), Gaps = 16/319 (5%) Query: 9 QAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTES 68 + + ++GVTRR F+K+C A +G+G APK+A AL + R VVW+H ECT C+ES Sbjct: 14 ERLEKRGVTRRDFMKFCGTVAAVMGMGPAFAPKVAEALTSDTRPDVVWLHNAECTGCSES 73 Query: 69 FIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGE 128 +R+ P +IL ISL+Y +TLMAAAG AE+ D + GKY+ +EG P Sbjct: 74 ILRTVEPYIDALILDYISLNYHETLMAAAGHAAEKALWDTVAA--GKYVAVIEGGVPTAP 131 Query: 129 QGMFC------ISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKV 182 G G +E + A A I +GTCAS+G VQ A PNPT +D++ Sbjct: 132 AGTANEPGGHGKVGGHTMLENTTKVVEKALATITYGTCASYGGVQKAAPNPTACKGVDEL 191 Query: 183 ITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFD 242 KPII VPGCPP P + I Y VT +P++D +GRP+ FYG+ +HD C R+ F+ Sbjct: 192 FPGKPIINVPGCPPNPYSLVGTIVYYVTKG-VPELDSVGRPVAFYGESVHDNCPRQEFFN 250 Query: 243 AGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGF 302 +F S+ + ARKG+CL K+GC+G TYN C + ++N ++P+Q+GH C+GC++ F Sbjct: 251 MDQFAPSFGSEEARKGWCLRKLGCRGVETYNNCPTVKFNQY-NWPVQAGHPCIGCSQPNF 309 Query: 303 WD------RGSFYSRVVDI 315 WD + FY+ + D+ Sbjct: 310 WDGEDWDGKTYFYADLTDL 328 >UniRef50_C7MNR7 Hydrogenase (NiFe) small subunit HydA n=4 Tax=Coriobacteriaceae RepID=C7MNR7_CRYCD Length = 439 Score = 344 bits (882), Expect = 4e-93, Method: Composition-based stats. Identities = 126/389 (32%), Positives = 186/389 (47%), Gaps = 22/389 (5%) Query: 2 NNEETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENK-------PRIPV 54 + F + +GV+RRSFLK C + G P++A ALE PV Sbjct: 5 ATQTGFEALLEARGVSRRSFLKLCGAVVAAAGASQLTIPQVADALEKSVIGAKEGKLYPV 64 Query: 55 VWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNG 114 +WI G CT CTE+F + P ++L +ISL+Y +TL AAAG EE E I G Sbjct: 65 IWIEGASCTGCTEAFAQVETPDPATIVLEMISLNYSETLSAAAGYSMEEAKEQTIEA--G 122 Query: 115 KYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPT 174 YIL EG G +G+P E L AA A+A++A G+CA G A PN Sbjct: 123 NYILIYEGAVLEKWGGEALRVAGKPGTEHLLEAAPSANAVVALGSCAVNGGWMGANPNSA 182 Query: 175 QATPIDKVITD----KPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQR 230 A ++K + + P++ +PGCP P+ + A++ +V ++LP +D +P + + + Sbjct: 183 GAVGVEKFLKESGINVPVVNIPGCPANPEWLVAVLVDVVMMNKLPALDYENKPALIFDET 242 Query: 231 IHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQS 290 IHD C RR HF+ GEFV + + K YCLY MGC+GP T C R+N+ S+ +++ Sbjct: 243 IHDNCERRGHFENGEFVYQFGSEEEAKNYCLYAMGCRGPQTKANCGIVRYNNRRSWCVEA 302 Query: 291 GHGCLGCAENGFWDRG--------SFYSRVVDIPQMGTHSTADTVGLTALGVVAAAVGVH 342 G C+GC E D G F R D+ + V L +VAA + VH Sbjct: 303 GAPCIGCCEAAPMDPGHNWVEVNTPFMKRHRDLRIGDWTFQTEAVCLGLTAIVAAGIAVH 362 Query: 343 AVASAVDQRRRHN-QQPTETEHQPGNEDK 370 R + + + + D+ Sbjct: 363 GFGIKASGRMKGKFRFEEKRAWDAKHPDR 391 >UniRef50_Q7VJP5 Putative uncharacterized protein n=3 Tax=Helicobacter RepID=Q7VJP5_HELHP Length = 552 Score = 343 bits (880), Expect = 5e-93, Method: Composition-based stats. Identities = 116/311 (37%), Positives = 171/311 (54%), Gaps = 12/311 (3%) Query: 6 TFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCC 65 T+ ++ + V S++ + +G+ A L KP +VW+H ECT C Sbjct: 20 TYKESRHKVNVQWVSYI------CSLIGIPKEGVELCAQILSLKPPTRLVWLHLAECTGC 73 Query: 66 TESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPP 125 + SF+R P + V+L I+L+Y +T+M A G A++ + + + +IL +EG Sbjct: 74 SSSFLRLDKPDIESVLLEYITLEYHETIMGAVGFSAKKSLHNTLDKE---FILVIEGGVS 130 Query: 126 LGEQGMFCISSGRPFI--EKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVI 183 LG F S E+ K A A AI A GTC+S+G VQAA PNPTQ+ ID + Sbjct: 131 LGNHAHFLTSGADSITGEEECKEVAQKAQAIFAVGTCSSFGGVQAAYPNPTQSIGIDSFL 190 Query: 184 TDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDA 243 + + II +PGCPP + I Y + LP D + RP+ YG+ +HD C R+A F++ Sbjct: 191 SQR-IINIPGCPPSEANIIGSILYYILLQELPPTDSLHRPIWSYGKNLHDMCERKAKFES 249 Query: 244 GEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFW 303 G+FVQS+DD GYCLYK+GCKGP +N C ++N S+PIQ+GHGC+ C+E FW Sbjct: 250 GDFVQSFDDPHLEDGYCLYKVGCKGPYVFNNCPKVKFNAKTSYPIQAGHGCIACSEPDFW 309 Query: 304 DRGSFYSRVVD 314 D ++ Sbjct: 310 DSFGRIEEPLN 320 >UniRef50_B9KFD7 Quinone-reactive Ni/Fe-hydrogenase, small subunit n=2 Tax=Campylobacter RepID=B9KFD7_CAMLR Length = 544 Score = 342 bits (878), Expect = 1e-92, Method: Composition-based stats. Identities = 112/294 (38%), Positives = 173/294 (58%), Gaps = 4/294 (1%) Query: 22 LKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVI 81 L+ + LGL P + ++W+H ECT C+ES +R++ P D+I Sbjct: 31 LEAVNSIIKILGLPNDFGPLAHRYFQLHTPPSLIWLHLSECTGCSESLLRTSLPDFLDLI 90 Query: 82 LSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISS-GRPF 140 ISL+Y +T M+A+G QAE E+++ + + ++LAVEG + I + G Sbjct: 91 FDFISLEYHETFMSASGHQAESHLEEVLEKKD--FLLAVEGGVCAIDPFYLTIGAHGENG 148 Query: 141 IEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDV 200 E L++ A A I A GTC+S+G +QAA PNPT++ I KV+ +K +I +PGCPP Sbjct: 149 YEILQKCAKNAKTIFAMGTCSSFGGIQAAHPNPTKSIGISKVLEEK-VINIPGCPPSDAN 207 Query: 201 MSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYC 260 + A + + + F++ +D RPL YG+ +HD C R+A F+AG F QS+DD+ ++GYC Sbjct: 208 IIAALCFYILFEQDMALDDQNRPLALYGKCLHDLCERKAKFEAGNFAQSFDDEKIKEGYC 267 Query: 261 LYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYSRVVD 314 L+K+GCKGP YN C ++N S+P+ +GHGC+ C+E FWD FY + + Sbjct: 268 LFKVGCKGPYAYNNCPKVKFNSKTSWPVAAGHGCIACSEENFWDDFGFYEKPMS 321 >UniRef50_Q31DZ5 Ni,Fe-hydrogenase small subunit n=4 Tax=Proteobacteria RepID=Q31DZ5_THICR Length = 813 Score = 342 bits (877), Expect = 1e-92, Method: Composition-based stats. Identities = 111/302 (36%), Positives = 177/302 (58%), Gaps = 3/302 (0%) Query: 19 RSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFIRSAHPLAK 78 + F + S+ +L L + ++++ ++PV+W+ +CT +E+FI++ +P Sbjct: 508 QDFNGWVSMMTLNLQLPPEYDNLVCRSIQHLNKVPVIWLELADCTGNSEAFIKTVNPTID 567 Query: 79 DVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISS-- 136 ++IL ISLDY + LMAA+G +E + +I + G YIL VEG PLG G F Sbjct: 568 ELILKFISLDYHELLMAASGPHSETRLDQLIEEDQGDYILIVEGAVPLGMGGNFLRIGPQ 627 Query: 137 GRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPP 196 G LKR A ASA++A G+CA G V AA PNPT A + + + II +PGCP Sbjct: 628 GETGEALLKRVAQHASAVMAVGSCAFDGGVVAAAPNPTGAVGVSEALGRDDIINLPGCPV 687 Query: 197 IPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAAR 256 P + + + + F +P++ +P+ Y R+HD C RR H+DAGEFV+ W D+ A+ Sbjct: 688 NPINVVGTLLHYIMFAEMPELGDNNKPVWAYAPRVHDNCERRGHYDAGEFVKEWGDEGAK 747 Query: 257 KGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGF-WDRGSFYSRVVDI 315 KG+CL++MGCKGP C+ ++N+G S+P+Q GHGC+ C + +D + +V+++ Sbjct: 748 KGWCLFEMGCKGPYADMNCAQMKFNEGTSWPVQVGHGCIACGKGKVAFDEFANNRKVINV 807 Query: 316 PQ 317 P+ Sbjct: 808 PK 809 >UniRef50_UPI000197A0EB hypothetical protein HcinC1_01015 n=1 Tax=Helicobacter cinaedi CCUG 18818 RepID=UPI000197A0EB Length = 554 Score = 340 bits (873), Expect = 3e-92, Method: Composition-based stats. Identities = 113/304 (37%), Positives = 167/304 (54%), Gaps = 10/304 (3%) Query: 13 RQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFIRS 72 R V+ + C+ +G+ AP L KP +VW+H ECT C+ESF+R Sbjct: 25 RNEVSIEWVTQICN----LIGIPKDYAPLCEQILSYKPLTRLVWLHMAECTGCSESFLRL 80 Query: 73 AHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMF 132 P + ++L ISL+Y +T+M A G A++ D + + +IL +EG LGE F Sbjct: 81 DKPGVESLLLEYISLEYHETIMGAVGFNAKQCLHDTLKEE---FILVIEGGVSLGENAYF 137 Query: 133 CISSGRP--FIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIK 190 S + A A AI A GTC+S+G VQAA PNPTQ+ I + PI+ Sbjct: 138 LTSGADSTNGENECLEVARHAQAIFAIGTCSSFGGVQAAYPNPTQSQGISTFLRQ-PIVN 196 Query: 191 VPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSW 250 +PGCPP M + Y + +P D + RPL YG+ +H+ C R+A F++G+FV+S+ Sbjct: 197 IPGCPPSEANMIGSLMYYILLQEIPPCDSLNRPLWSYGKNLHEMCERKAKFESGDFVESF 256 Query: 251 DDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYS 310 DD+ + GYCLYK+GCKGP N C ++N S+P+++GHGC+ C+E FWD Sbjct: 257 DDERLQDGYCLYKVGCKGPYVANNCPKVKFNAKTSWPVRAGHGCIACSEPDFWDSFGKIE 316 Query: 311 RVVD 314 ++ Sbjct: 317 EPIN 320 >UniRef50_Q24X54 Hup-type Ni,Fe-hydrogenase small subunit n=3 Tax=Desulfitobacterium RepID=Q24X54_DESHY Length = 362 Score = 338 bits (867), Expect = 2e-91, Method: Composition-based stats. Identities = 129/362 (35%), Positives = 205/362 (56%), Gaps = 11/362 (3%) Query: 9 QAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALEN-KPRIPVVWIHGLECTCCTE 67 ++ +G++RR F+K + +LGL +AP+ A A+E + PV+W+HG+ECT C+E Sbjct: 5 DFLQARGISRRDFMKLMAATTAALGLPEVLAPQAAKAVEAAMEKPPVIWLHGMECTGCSE 64 Query: 68 SFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLG 127 S + + +P + ++L +S+ Y +T+MAA+G AE+ ++D + + ++L VEG+ P Sbjct: 65 SLLATLNPSIESLVLDTLSIRYHETIMAASGHVAEQAYQDTLDEK---FVLVVEGSVPAS 121 Query: 128 EQ-GMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWG-CVQAARP-NPTQATPI-DKVI 183 E +C+ G+PF E + AAA A A+IA G+CA+ G + A P + K Sbjct: 122 EATDSYCMVGGKPFRETVLEAAAKAQAVIAVGSCATDGAGIPGACEIKPIGVRELLQKHN 181 Query: 184 TDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDA 243 P+I +P CP P+ + I Y +TF +P++D RPL++YG+ +HD C RR F+A Sbjct: 182 IATPVINLPCCPVKPNTLIGTIVYYLTFSAVPELDEQARPLIYYGKLLHDNCPRRGQFEA 241 Query: 244 GEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFW 303 G F+ W+D A+K YCL GCKGP TY C+ WND +F I +G C GC+E+GF+ Sbjct: 242 GNFLSDWNDP-AQKDYCLLLKGCKGPKTYTDCAQVWWNDNANFCINAGSPCSGCSESGFY 300 Query: 304 DRGSF-YSRVVDIPQMGTH-STADTVGLTALGVVAAAVGVHAVASAVDQRRRHNQQPTET 361 + S Y++ + G ADTVG G +G H +A+ R ++N + Sbjct: 301 GQFSPLYAKQENFSLPGLGQIHADTVGKVVGGATVVGLGAHLIATVASGRLKNNDSEQKK 360 Query: 362 EH 363 E Sbjct: 361 ED 362 >UniRef50_P69743 Hydrogenase-2 small chain n=130 Tax=Proteobacteria RepID=MBHT_ECO57 Length = 372 Score = 337 bits (865), Expect = 3e-91, Method: Composition-based stats. Identities = 123/292 (42%), Positives = 189/292 (64%), Gaps = 1/292 (0%) Query: 11 MRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFI 70 + G+ RR F+K C+ A ++GL + A ++A ++ N R PV+WI ECT CTES + Sbjct: 8 IHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLL 67 Query: 71 RSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQG 130 R+ HP ++++L ISL+Y + L AA G Q EE + + +Y G+Y+L V+G+ PL + G Sbjct: 68 RATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNG 127 Query: 131 MFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIK 190 ++C+ +G P ++ +++AA GA+AIIA G+C++WG V AA NPT A + +V+ K +I Sbjct: 128 IYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVIN 187 Query: 191 VPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSW 250 +PGCPP P A + +++T+ + P +D RP YG+ IH+ C RR HFDAG F + + Sbjct: 188 IPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEF 247 Query: 251 DDDAARKGYCLYKMGCKGPTTYNACSSTRWND-GVSFPIQSGHGCLGCAENG 301 D+ R+G+CLY +GCKGP TY CS+ ++ D G +P+ GH C GC E G Sbjct: 248 GDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEG 299 >UniRef50_P61429 Periplasmic [NiFe] hydrogenase small subunit 2 n=9 Tax=Desulfovibrio RepID=PHNS2_DESVH Length = 324 Score = 336 bits (862), Expect = 6e-91, Method: Composition-based stats. Identities = 124/298 (41%), Positives = 189/298 (63%), Gaps = 5/298 (1%) Query: 16 VTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFIRSAHP 75 +TRR F+K+C + A ++G+G G AP +A AL+ K R VV++HG ECT CTE +RS P Sbjct: 21 MTRREFMKFCGIVAVAMGMGPGFAPAVAEALQAKGRPSVVYMHGAECTGCTEGLLRSIDP 80 Query: 76 LAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCIS 135 +++ +ISLDY +T+MAAAG A ED + G Y+ +EG P + G++ Sbjct: 81 FIDILMMEVISLDYCETVMAAAGRAAHHALEDALRNPAG-YVCTIEGAIPTRKGGVYGQV 139 Query: 136 SGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI--IKVPG 193 G + R A+GA A+IA GTCAS+G +QAA PNP+ A + + + I I + G Sbjct: 140 GGETMLSLFSRVASGAKAVIAMGTCASFGGIQAAAPNPSGAIGVREALAPFGIQPINIAG 199 Query: 194 CPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDD 253 CPP P + +++T +P++D GRP MFYG +HD+C RR HF+A EF ++ Sbjct: 200 CPPNPVNYIGTVVHLLTKG-MPELDSAGRPKMFYGTTVHDQCERRKHFNADEFAPGFESK 258 Query: 254 AARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYSR 311 AR+G+CL+K+GC+GP TYN C + ++N V++P+++G C+GC+E GFWD + +++ Sbjct: 259 EAREGWCLHKLGCRGPYTYNNCPTAQFNQ-VNWPVRAGAPCIGCSEPGFWDALAPFNK 315 >UniRef50_Q24VQ2 Ni,Fe-hydrogenase small subunit n=2 Tax=Desulfitobacterium hafniense RepID=Q24VQ2_DESHY Length = 319 Score = 334 bits (855), Expect = 5e-90, Method: Composition-based stats. Identities = 116/312 (37%), Positives = 179/312 (57%), Gaps = 7/312 (2%) Query: 3 NEETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENK-PRIPVVWIHGLE 61 E+ YQ + R+GV+RR FLK C+ +LG+ +AP+IA A E + PV+W+ G Sbjct: 10 PMESGYQRLARRGVSRRDFLKLCTFTCAALGIDLSLAPQIAEAAEANLSKKPVIWMQGQG 69 Query: 62 CTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVE 121 CT C+ES + S P +++IL L+S+ Y TLMAA+G QA + ED I G YIL +E Sbjct: 70 CTGCSESLLSSVDPGPEEIILDLLSVRYHPTLMAASGEQAVQSLEDCIA--QGHYILVLE 127 Query: 122 GNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDK 181 G+ P + +C G+PFIE+ K AA A A+IA G+CA +G + A T A + Sbjct: 128 GSIPTADS-RYCFVEGKPFIEQFKLAAEKAEAVIAVGSCACYGGIPRAG--FTGAAGAQE 184 Query: 182 VITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHF 241 V+ ++ +P CP PD + ++ Y ++ + LP +D + RP +Y +HD CYRR H+ Sbjct: 185 VLEGVKVVNLPSCPVKPDRLVGLLLYYLSHNALPKLDGLNRPEAYYRYTLHDSCYRRWHY 244 Query: 242 DAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENG 301 + GE+++ W++ +CLY GCKG TY C++ WN G +F +G C GC++ Sbjct: 245 EKGEYLEDWNNPDTLD-WCLYHKGCKGQDTYTNCANAWWNGGANFCGYAGSPCAGCSQPE 303 Query: 302 FWDRGSFYSRVV 313 ++D + Sbjct: 304 YYDGFAPLFVNP 315 >UniRef50_C3XE47 Quinone-reactive Ni/Fe hydrogenase n=1 Tax=Helicobacter bilis ATCC 43879 RepID=C3XE47_9HELI Length = 593 Score = 332 bits (852), Expect = 1e-89, Method: Composition-based stats. Identities = 102/291 (35%), Positives = 159/291 (54%), Gaps = 3/291 (1%) Query: 24 YCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILS 83 + + + + M LE + VVW+H ECT C+ES +R+ P + ++ Sbjct: 37 WLKEQLSLISVPKTMLDTCVEILEYMGDLKVVWLHLQECTGCSESLLRTETPSFEVLLFD 96 Query: 84 LISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEK 143 + + Y D +M ++G A E + KY+L VEG+ P+G + R ++ Sbjct: 97 IFKIVYHDLVMVSSGHGAVAALEHA--NSHEKYVLLVEGSIPMGFAKDYITLGDRNGYDE 154 Query: 144 LKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSA 203 + A A+ A GTC+S+G +Q+A PNPT + ++ ++ II VPGCPP + A Sbjct: 155 ISHLIHNAEAVFAIGTCSSFGGIQSAYPNPTNGHALSEIF-EREIINVPGCPPSDKNIVA 213 Query: 204 IITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYK 263 + Y F P +D + RPL Y + +HD C R++ F AG+FV+S+DD ++GYCLYK Sbjct: 214 TLLYYYLFAESPSLDTLKRPLWAYSKSVHDLCERKSSFMAGDFVESFDDSNMKEGYCLYK 273 Query: 264 MGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYSRVVD 314 +GCKGP TYN C ++N S+P+Q GHGC+GC+E FWD + + Sbjct: 274 VGCKGPYTYNNCPKVKFNAKTSWPVQGGHGCIGCSEPNFWDNFGNIEKPLS 324 >UniRef50_D2BG44 Ni/Fe hydrogenase, small subunit n=5 Tax=Dehalococcoides RepID=D2BG44_DEHSV Length = 354 Score = 332 bits (850), Expect = 2e-89, Method: Composition-based stats. Identities = 110/351 (31%), Positives = 176/351 (50%), Gaps = 28/351 (7%) Query: 11 MRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPR-IPVVWIHGLECTCCTESF 69 M +TRR F++ + + +L LGA P+ + IPV+W+ G C CT S Sbjct: 1 MFNTKLTRRDFVQLAAGSTAALSLGALKLPEFEKMFAEALKEIPVIWLQGAGCNGCTIST 60 Query: 70 IRSAHPLAKDVILS------LISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGN 123 I P +D++L+ +S+ Y T+MAA G A D G ++L +EG+ Sbjct: 61 INVVSPTIQDLLLTSVVPGTHVSMQYHPTIMAAQGDLAMSTITDTAA--KGPFVLVIEGS 118 Query: 124 PPLGEQGMFCISS-----GRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATP 178 PL + G++ G +E + A A A++A GTC+++G + A+ PNPT A Sbjct: 119 VPLKDDGVYAEIGEKDGEGITMLEHVLNLAPKALAVVAAGTCSAFGGITASAPNPTGAKA 178 Query: 179 IDKVITD----KPIIKVPGCPPIPDVMSAIITYMVTFD-RLPDVDRMGRPLMFYGQRIHD 233 + +++ + P++ +PGCPP PD + + ++ D+D MGRP +YG+ +HD Sbjct: 179 VSEILKEHNITTPVVNLPGCPPHPDWVVGTLATVLMSGLDALDLDDMGRPKAYYGKLLHD 238 Query: 234 KCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHG 293 +C RR H++ G F + YCL+ +GCKGP TY CS WN+ + +++ Sbjct: 239 QCPRRGHYEKGLFATKLSEP-----YCLFLVGCKGPVTYADCSDRLWNNKTRWCVEADSP 293 Query: 294 CLGCAENGFWDRGSFYSRVVDIPQMGTHSTADTVGLTALGVVAAAVGVHAV 344 C+GCA GF D S + P + + +G+ VV A GV AV Sbjct: 294 CIGCAHPGFPDEVSPMF---EAPPVINSTDKLAIGIAGTAVVLTA-GVAAV 340 >UniRef50_Q5HT18 Hydrogenase, (NiFe)/(NiFeSe) small subunit family n=14 Tax=Campylobacter RepID=Q5HT18_CAMJR Length = 497 Score = 329 bits (843), Expect = 1e-88, Method: Composition-based stats. Identities = 112/290 (38%), Positives = 174/290 (60%), Gaps = 5/290 (1%) Query: 25 CSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSL 84 + A L LG + + P+ +VW+H ECT C+ES +R+ P +++ Sbjct: 36 VKILARHLSLGNEIPALAQRFFQIAPKTKLVWLHLCECTGCSESLLRADLPSFDELVFDF 95 Query: 85 ISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISS-GRPFIEK 143 SL+Y +TLMAA GT+AEE+ E ++ + +ILAVEG + I + G E Sbjct: 96 FSLEYHETLMAANGTKAEELLEYVLEE---DFILAVEGGVAAIDTFFLTIGAQGESGYEI 152 Query: 144 LKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSA 203 L++ AA A AI A GTC+S+G +QAA PNP++ I +V++ K ++ +PGCPP + A Sbjct: 153 LEKLAAKAKAIFAVGTCSSYGGIQAAYPNPSKTCGISEVLSQK-VVNIPGCPPSDINIIA 211 Query: 204 IITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYK 263 +++ F LP++D RP+ YG+ +HD C R+A F++G F + +DD+AA+ G CL+K Sbjct: 212 TLSFFALFGVLPELDEQNRPVWAYGKCLHDICERKAKFESGIFAEHFDDEAAKNGACLFK 271 Query: 264 MGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYSRVV 313 +GCKGP TYN C ++N S+P+ +GHGC+ C+E FWD Y + + Sbjct: 272 IGCKGPYTYNNCPKVKFNAKTSWPVAAGHGCIACSEKNFWDEFGNYEKPM 321 >UniRef50_P13063 Periplasmic [NiFeSe] hydrogenase small subunit n=10 Tax=Deltaproteobacteria RepID=PHSS_DESBA Length = 315 Score = 321 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 101/318 (31%), Positives = 163/318 (51%), Gaps = 27/318 (8%) Query: 14 QGVTRRSFLKYCSLAATSLGLGAGMAPKIAWAL-ENKPRIPVVWIHGLECTCCTESFIRS 72 ++RR F+K CS LG+ P I A+ E + PV+W+ G CT C+ S + + Sbjct: 1 MSLSRREFVKLCSAGVAGLGISQIYHPGIVHAMTEGAKKAPVIWVQGQGCTGCSVSLLNA 60 Query: 73 AHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMF 132 HP K+++L +ISL++ T+MA+ G A +I ++NG + L VEG P ++G + Sbjct: 61 VHPRIKEILLDVISLEFHPTVMASEGEMALAHMYEIAEKFNGNFFLLVEGAIPTAKEGRY 120 Query: 133 CISS----------GRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKV 182 CI +E ++ A + A +A GTC+++G + AA N T + + Sbjct: 121 CIVGETLDAKGHHHEVTMMELIRDLAPKSLATVAVGTCSAYGGIPAAEGNVTGSKSVRDF 180 Query: 183 ITDKPI----IKVPGCPPIPDVMSAIITYMVTFD------RLPDVDRMGRPLMFYGQRIH 232 D+ I + VPGCPP PD M + + LP++D GRPL+F+G IH Sbjct: 181 FADEKIEKLLVNVPGCPPHPDWMVGTLVAAWSHVLNPTEHPLPELDDDGRPLLFFGDNIH 240 Query: 233 DKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGH 292 + C +D EF +++ C ++GCKGP+TY C+ RWN+G+++ ++ Sbjct: 241 ENCPYLDKYDNSEFAETFTKPG-----CKAELGCKGPSTYADCAKRRWNNGINWCVE-NA 294 Query: 293 GCLGCAENGFWDRGSFYS 310 C+GC E F D S + Sbjct: 295 VCIGCVEPDFPDGKSPFY 312 >UniRef50_A5D1L0 Ni,Fe-hydrogenase I small subunit n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D1L0_PELTS Length = 332 Score = 321 bits (822), Expect = 3e-86, Method: Composition-based stats. Identities = 105/304 (34%), Positives = 159/304 (52%), Gaps = 12/304 (3%) Query: 14 QGVTRRSFLKYCSLAATSLGLGAGMAPKIAW--ALENKPRIPVVWIHGLECTCCTESFIR 71 G+TRR F+K C A L + P++ AL + + PV+W+ G CT C+ S + Sbjct: 1 MGLTRREFIKLCMTTAAGASLFTVIGPELQESLALAAEGKPPVIWLQGASCTGCSISLLN 60 Query: 72 SAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGM 131 S P + VIL +ISL Y + AA+G E+ ++++ + ++IL VEG PL G Sbjct: 61 SVDPAIEKVILDVISLRYHPNISAASGHFVAEIMDEMLLSHKDQFILVVEGAIPLKNDGK 120 Query: 132 FCISSGRPFIEK-----LKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDK 186 +C + + E ++ A A+IA G CAS+G + PNPT + KV+T K Sbjct: 121 YCTIAEKNGREITMLKAVQVLGNAAKAVIAAGQCASYGGIPGGAPNPTGVVGVKKVVTKK 180 Query: 187 PIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEF 246 P+I + CP PD + Y++ + +P +DR GRP MFY + IH+ C RR +FD+G F Sbjct: 181 PVINISLCPMHPDHFLGTVVYILKYGDIPPLDRYGRPAMFYPKPIHESCLRRPYFDSGRF 240 Query: 247 VQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRG 306 D+ CL +GCKG Y C WN+ V++ I++G C+ C+E F D Sbjct: 241 ASFIGDEG-----CLALLGCKGFVGYADCPVRGWNNNVNWCIKAGAPCMACSEPTFPDAA 295 Query: 307 SFYS 310 S Sbjct: 296 SPIY 299 >UniRef50_D2RD73 Hydrogenase (NiFe) small subunit HydA n=3 Tax=Archaeoglobaceae RepID=D2RD73_ARCPR Length = 352 Score = 318 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 110/363 (30%), Positives = 178/363 (49%), Gaps = 30/363 (8%) Query: 14 QGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFIRSA 73 ++RR+FLK S L A + + K + W++G CT CT SF +SA Sbjct: 1 MKLSRRNFLKLVGAMGASTFLTTCKADLVKALEDVKDYWHICWLNGAACTGCTISFAQSA 60 Query: 74 HPLAKDVILSLIS---------LDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNP 124 P ++ ++ DY +T+ A+GT AEE+ E K IL VEG Sbjct: 61 DPDLVQILTEILVGNSGLPIALPDYMETIHVASGTLAEELKERWRQSKRAK-ILIVEGAV 119 Query: 125 PLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAAR-----PNPTQATPI 179 + FC G+ F E LK AA A IIA G CA++G + A+ PNPT A + Sbjct: 120 ---QDEGFCTIHGKDFREHLKEAAEVADYIIAVGQCATYGGIPGAKPWDGEPNPTGAKGV 176 Query: 180 DKVI----TDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDK- 234 + +K +I +P CP PD + + ++ +P++D+ GRP +F+G+ +H++ Sbjct: 177 QDFLYEVGINKTVINIPCCPAHPDHIIVTLASLML-GVVPELDKYGRPKVFFGKNMHNEL 235 Query: 235 CYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGC 294 C R ++D G F+ ++ C +KMGCKGP C+ +WN+G S+ +++ C Sbjct: 236 CPYRPYYDRGIFITKPGEEG-----CRFKMGCKGPICNTDCAIRKWNNGTSYCVETNI-C 289 Query: 295 LGCAENGFWDRGSFYSRVVDIPQMGTHSTADTVGLTALGVVAAAVGVHAVASAVDQRRRH 354 +GCAE G+ D+ S + V A+T+G LG +G+HAV ++ + Sbjct: 290 IGCAEPGWPDKFSPFYAEVPELPRVLGVGAETIGAGLLGATLLGIGIHAVRHLGAKKHKK 349 Query: 355 NQQ 357 ++ Sbjct: 350 EEE 352 >UniRef50_Q6ARY6 Related to periplasmic [NiFeSe] hydrogenase, small subunit [Precursor] n=1 Tax=Desulfotalea psychrophila RepID=Q6ARY6_DESPS Length = 300 Score = 315 bits (808), Expect = 1e-84, Method: Composition-based stats. Identities = 104/309 (33%), Positives = 156/309 (50%), Gaps = 16/309 (5%) Query: 13 RQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALE--NKPRIPVVWIHGLECTCCTESFI 70 +TRR FL+ + + LGLG+ P++A ALE R V+W+ C+ C+ S + Sbjct: 1 MTTLTRRQFLELSAKMSVVLGLGSSAIPQVAEALEALTTGRSKVLWLQAQSCSGCSISML 60 Query: 71 RSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQG 130 S P +++ ISL + TL AA G + + G YIL VEG+ P G Sbjct: 61 DSESPGPAELLTQYISLLFHHTLSAATGESCMHIVRKSVQ--QGGYILVVEGSIPAGMPE 118 Query: 131 MFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVI----TDK 186 C+ G P E +K+AA A +IA GTCA++G + AA NPT A P+ + Sbjct: 119 -ACMMGGIPVGELIKQAAERADYVIALGTCAAFGGIPAAEGNPTGAVPLGPFLQANKIKT 177 Query: 187 PIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEF 246 PII +PGCP PD + + ++ F LP D RP MF+ + HDKC R + ++ F Sbjct: 178 PIINIPGCPSHPDWLVGTLVHLCKFG-LPPCDEQRRPKMFFASKNHDKCPRFSDYEQENF 236 Query: 247 VQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRG 306 + + D CL+K+GC G +TY C+ N G + I++G C+GC+ F + Sbjct: 237 ARKFSDPG-----CLFKLGCLGVSTYADCTIRDRNGGTNACIKAGAPCIGCSSPQFAQKK 291 Query: 307 S-FYSRVVD 314 S + R + Sbjct: 292 SLPFYRKSE 300 >UniRef50_C8S958 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Ferroglobus placidus DSM 10642 RepID=C8S958_FERPL Length = 355 Score = 313 bits (802), Expect = 6e-84, Method: Composition-based stats. Identities = 102/365 (27%), Positives = 173/365 (47%), Gaps = 27/365 (7%) Query: 14 QGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPR--IPVVWIHGLECTCCTESFIR 71 + RR F+K + + L I A E + +VW+ G + CT S ++ Sbjct: 1 MRLGRRGFVKALTTLGAAAFLSK-YKSFIVEAFEEAKSNDVKLVWLQGQSDSACTVSLLQ 59 Query: 72 SAHPLAKDVILSL-ISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQG 130 +A P D + L + + + T+M G +A +V E+I +L +EG+ P G+ Sbjct: 60 AADPDLYDAVEELKVGIYFHPTVMPDFGDKAIKVLEEI-----EPDVLVLEGSIPTGDME 114 Query: 131 MFCISSGR-----PFIEKLKRAAAGAS-AIIAWGTCASWGCVQAARP----NPTQATPID 180 C R +E L A++ +G+CA++G + +A+ +PT A + Sbjct: 115 YACTFGERNGKPVTLVEWLNELIPKTKVAVVGFGSCATYGGIPSAKDFEGKSPTNAVGLY 174 Query: 181 KVITDK----PIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCY 236 + + DK P++ +PGCP PD + + ++ ++ D+D RP F+ Q IHD C Sbjct: 175 QFLKDKKPAVPVVLLPGCPGHPDWLLVTLAAVLLGVKV-DLDDYWRPKWFFSQLIHDNCA 233 Query: 237 RRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLG 296 RR +D G F +S+++ + CL+K+GC+GP TY ACS T+WN GV+ + +G C+G Sbjct: 234 RRGFYDEGWFAKSFEESDLKYETCLFKLGCRGPMTYAACSETKWNGGVNVCMNAGAPCIG 293 Query: 297 CAENGFWDRGSFYSRVVDIPQMGTHSTADTVGLTALGVVAAAVGVHAVASAVDQRRRHNQ 356 C GF D S + + ++ TV T G V G + V A+ + + + Sbjct: 294 CMHPGFPDETSPFFKEQSRLEIDL---TKTVFSTLTGAVLVGAGAYIVTHAIKEGKEDKK 350 Query: 357 QPTET 361 E Sbjct: 351 GGEEK 355 >UniRef50_A1HLY8 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HLY8_9FIRM Length = 325 Score = 313 bits (802), Expect = 7e-84, Method: Composition-based stats. Identities = 103/305 (33%), Positives = 164/305 (53%), Gaps = 13/305 (4%) Query: 13 RQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALE--NKPRIPVVWIHGLECTCCTESFI 70 + +TRR FL+ C +LGL + +I A PVVW+ G C+ C+ S + Sbjct: 1 MRNLTRRDFLRLCGATGAALGLSNVLHAEIVEAFSGPAAGHPPVVWLQGGSCSGCSVSLL 60 Query: 71 RSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQG 130 S P V+ +ISL + TLMAAAG A V +++ +Y G+Y L VEG P+ Sbjct: 61 NSVAPDIGKVLTDIISLKFHQTLMAAAGEPAMAVLDEVRARYAGQYYLVVEGAVPVAAGR 120 Query: 131 MFCISSGR-----PFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITD 185 PF +++++ AA A A++A GTCA++G + AA NPT + + V+ Sbjct: 121 HTATLGEHNGQPVPFADRVRQMAAKAKAVMAVGTCAAYGGIPAAGVNPTASKAVSAVVRG 180 Query: 186 KPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGE 245 P++ VPGCP PD + + +++ + +P++D++ RPLMF+G+ IHD C RR FD G Sbjct: 181 TPLVNVPGCPIHPDWVLGTLLHLIRYG-MPELDKLQRPLMFFGKSIHDICERRPDFDQGR 239 Query: 246 FVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDR 305 F + + CLYK+GCKGP + C+ ++N+G ++ + + CL C F D Sbjct: 240 FAKKLSEPG-----CLYKLGCKGPMAFGDCAERKFNNGANWCVGANSPCLSCTGPEFPDA 294 Query: 306 GSFYS 310 + + Sbjct: 295 SAPFF 299 >UniRef50_B8HZS9 Hydrogenase (NiFe) small subunit HydA n=3 Tax=Clostridium RepID=B8HZS9_CLOCE Length = 299 Score = 293 bits (751), Expect = 5e-78, Method: Composition-based stats. Identities = 89/295 (30%), Positives = 148/295 (50%), Gaps = 17/295 (5%) Query: 22 LKYCSLAATSLGLGAGMAPKIAWALENK--PRIPVVWIHGLECTCCTESFIRSAHPLAKD 79 K C A L + ++ + R +VW+ C+ S + A+P K Sbjct: 4 TKTCPEYAARLKTARELFDRVKDKISEGTLMRRNLVWLELTGCSGNIISLLDGANPDFKY 63 Query: 80 VILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSG-- 137 +I + + YD++L+AA G +A E ++ +YILAVEG GM+ + Sbjct: 64 LISQMTNFLYDNSLVAAEGEKAM---EKLMGSIGDEYILAVEGAVATKNNGMYNVIGRWQ 120 Query: 138 ---RPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGC 194 + +K AS +IA G CAS G V AA+PNP+ + ++ ++ +IK+PGC Sbjct: 121 GKPVTALNAIKLLGEKASYVIALGACASHGGVSAAKPNPSDCVSVQSIL-NRKVIKLPGC 179 Query: 195 PPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDA 254 P PD + +++ + P++D RP++FY IHD+C RR+ FD G F + + Sbjct: 180 PCHPDWFMGTLAHILLYGE-PELDNRDRPVLFYSTLIHDRCPRRSFFDKGIFAKKLGES- 237 Query: 255 ARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGSFY 309 C++K+GC+GP T C +WN V++P++ C+GCA+ GF D+ + Sbjct: 238 ----TCMFKLGCRGPVTRIDCPIRKWNQYVNWPVEDDTPCIGCAQFGFPDQMEPF 288 >UniRef50_B8D1R7 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Halothermothrix orenii H 168 RepID=B8D1R7_HALOH Length = 334 Score = 292 bits (748), Expect = 1e-77, Method: Composition-based stats. Identities = 91/293 (31%), Positives = 137/293 (46%), Gaps = 13/293 (4%) Query: 47 ENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFE 106 N ++PV+WI + SF+ + +P V +I L Y +T MAA G A ++ + Sbjct: 35 NNGKKLPVIWIETNDSGDNNISFMNTTYPYLDQVFEDIIDLYYSNTFMAAQGEDAYQILK 94 Query: 107 DIITQYNGKYILAVEGNPPLGEQGMFCIS-----SGRPFIEKLKRAAAGASAIIAWGTCA 161 + + ++ L VEG PL G + I+ +E ++ A +A GTCA Sbjct: 95 KVALREKREFTLVVEGAIPLKANGRYNITFITDEGPVTAVELVRWLGELAKYAVAVGTCA 154 Query: 162 SWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMG 221 S+G AA PN T + + V+ D+ II V GCP PD + ++ + LPD+DR+G Sbjct: 155 SFGGASAASPNITGSVALGDVL-DRQIINVSGCPINPDWFVGTLAHLQMYG-LPDLDRLG 212 Query: 222 RPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWN 281 RP +FY +H C RR++FD G F + D C++ GC GP T C W+ Sbjct: 213 RPELFYQFTVHRHCQRRSYFDDGNFAEELGDIE-----CMFSQGCVGPRTGADCPYRLWD 267 Query: 282 DGVSFPIQSGHGCLGCAENGFWDRGSFYSRV-VDIPQMGTHSTADTVGLTALG 333 + VS+PI+ C+GC F D S + Q T G G Sbjct: 268 NHVSYPIKVNTPCIGCTNEDFPDGSSPFFVPLPLKRQEDEEVTPGRDGDKING 320 >UniRef50_B1I618 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Clostridiales RepID=B1I618_DESAP Length = 375 Score = 292 bits (747), Expect = 2e-77, Method: Composition-based stats. Identities = 101/334 (30%), Positives = 166/334 (49%), Gaps = 16/334 (4%) Query: 47 ENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFE 106 E + P+VW+ C S + HP + ++ L+ + + +TLM A G QA EV E Sbjct: 49 ERLEKHPLVWLETNTCHGNILSLMNGQHPDFEAIMRELLDVYWTNTLMGAKGHQAIEVLE 108 Query: 107 DIITQYNGKYILAVEGNPPLGEQGMFCISS----GRPFIEK--LKRAAAGASAIIAWGTC 160 ++ + G YIL VEG P G + G P+ + AA A ++A G+C Sbjct: 109 KVMVERPGDYILVVEGTVPTAAGGRYAHIGLRGNGEPWTAWDAVVELAAAAKHVVAVGSC 168 Query: 161 ASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRM 220 A+WG A PNPT + P+ V+ D+ +I VPGCP PD + + +++ + +P++D M Sbjct: 169 AAWGLPFGAHPNPTGSKPVSAVV-DRTVINVPGCPAHPDWILGTLAHLIWYG-VPELDAM 226 Query: 221 GRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRW 280 RP++FYG+ IH+ C RR +F++G F + +CLYK+GCKGP TY C S +W Sbjct: 227 NRPVVFYGETIHNLCQRRHYFESGIFAGEIGEP-----WCLYKIGCKGPVTYADCPSRQW 281 Query: 281 ND-GVSFPIQSGHGCLGCAENGFWDRGSF-YSRVVDIPQMGTHSTADTVGLTALGVVAAA 338 +++P+ + C+GC F + + + + D+ G TAD VG A Sbjct: 282 CGEHMNWPVGANTPCIGCTSPEFLEHTAPFFEHLPDVRLPGVRVTADRVGAATGLAAALG 341 Query: 339 VGVHAVASAVDQRR-RHNQQPTETEHQPGNEDKQ 371 +G+H + R + + + ++ Sbjct: 342 IGLHLTGKLLTGRLQKEWGKGLRKAGKALRRKRK 375 >UniRef50_A5I2W4 Hydrogenase small subunit n=13 Tax=Firmicutes RepID=A5I2W4_CLOBH Length = 290 Score = 292 bits (746), Expect = 2e-77, Method: Composition-based stats. Identities = 85/283 (30%), Positives = 150/283 (53%), Gaps = 20/283 (7%) Query: 40 PKIAWALE-----NKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLM 94 A+E ++ +W+ C+ S + + +P ++ ++++L ++++LM Sbjct: 18 MLCKEAMELINHRKIKKVNAIWLEVTGCSGNIISLLNAENPGLIYILRNIVNLTFNNSLM 77 Query: 95 AAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGR-----PFIEKLKRAAA 149 A G A +E + + ++IL V+G E G + I + +E +K A Sbjct: 78 GAEGEFA---YEQFLNTLDTEFILLVDGAVSTKENGYYNIIANYRGRPVTALEAIKMAGE 134 Query: 150 GASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMV 209 A ++ GTC+S+G + AA+PNP+ + +D VI +K +IK+PGCP PD + + ++V Sbjct: 135 KAKYVVTVGTCSSYGGISAAKPNPSGSKSVDAVI-NKEVIKLPGCPCHPDWVVGTLAHLV 193 Query: 210 TFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGP 269 T+ + P++D GRP++FYG IHD C RR FD F + + ++ C++K+GC+GP Sbjct: 194 TYGK-PELDNKGRPILFYGITIHDSCTRRGFFDKRIFAKKFGEEG-----CMFKLGCRGP 247 Query: 270 TTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYSRV 312 T C +WN V++PI C+GCA+ F D + R Sbjct: 248 VTKTDCPRRKWNGYVNWPIGDNTNCIGCAQERFPDGMEPFVRY 290 >UniRef50_B9L9V0 Hydrogenase n=1 Tax=Nautilia profundicola AmH RepID=B9L9V0_NAUPA Length = 306 Score = 288 bits (736), Expect = 3e-76, Method: Composition-based stats. Identities = 77/317 (24%), Positives = 139/317 (43%), Gaps = 16/317 (5%) Query: 16 VTRRSFLKYCSLAATSLGLGAGMAPKIAWAL-ENKPRIPVVWIHGLECTCCTESFIRSAH 74 + RR FLK ++G + + A E R ++W+ L C C+ +F+ + Sbjct: 1 MDRREFLKNVHNLLVAIGGSSFFTMEELEAFDETDDRPDIIWLQALSCDGCSVNFLNAEI 60 Query: 75 PLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCI 134 P +++ ++ + T+MA+ G +A ++ + + IL VEG P C+ Sbjct: 61 P-VTEILNRFANIVFHPTIMASDGKEAMDIL---MNYKSDNMILVVEGAIPTAMP-HACM 115 Query: 135 SSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVIT----DKPIIK 190 + + + A A AI+A GTCA++ + + T+A + + + P++ Sbjct: 116 MGEMFVNDIILKKAKEAKAIVAAGTCATFAGICDMKNMYTKAGSVKYFLETNNINTPVVN 175 Query: 191 VPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSW 250 +P CP P + + Y + LP +D RP+ F+ IH++C + F + Sbjct: 176 LPTCPMKPKHLLYTLFYYIKHKSLPPLDMSHRPIKFFSNTIHERCIYYNDYQQNIFAKKI 235 Query: 251 DDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYS 310 D CL+K+GC+GP T N C + I+SGH C+GC F R + Sbjct: 236 GDRG-----CLFKLGCQGPVTKNDCVKSTGEYDKYNCIKSGHPCVGCGSENFP-RTIMFK 289 Query: 311 RVVDIPQMGTHSTADTV 327 R D ++ + T + Sbjct: 290 RSDDKREIEKYKTFKRI 306 >UniRef50_Q1NM22 Ni-Fe hydrogenase, small subunit n=3 Tax=Deltaproteobacteria RepID=Q1NM22_9DELT Length = 343 Score = 286 bits (732), Expect = 8e-76, Method: Composition-based stats. Identities = 94/324 (29%), Positives = 148/324 (45%), Gaps = 16/324 (4%) Query: 12 RRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENK----PRIPVVWIHGLECTCCTE 67 R Q +RR FLK + G ++ A E PR +VW+ G C+ C+ Sbjct: 12 RMQICSRREFLKKIYRVVVAAGAAPLLSFDELLAAEGGENPFPRPNLVWLQGASCSGCSL 71 Query: 68 SFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLG 127 S + + D++ L Y TL A G Q ++ + T Y+L +EG P G Sbjct: 72 SLLNTEEITVLDLLTRFSRLLYHPTLAQATGNQVTDLLTKLTTGVE-PYLLVLEGGIPAG 130 Query: 128 EQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDK- 186 C+ + RPF E + R A GA A +A GTCA++G V A T +D+ + + Sbjct: 131 MP-HACLLAHRPFEEWVSRLAQGADACVAVGTCAAFGGVAAMPGTLTGVVSLDRHLATRD 189 Query: 187 ---PIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDA 243 P++ +P CP P+ + + + RLP++D GRP F+ +H +C R A F Sbjct: 190 IAVPLVNLPSCPMKPEHLVYTLLHYGRHRRLPELDGRGRPRRFFANTVHQRCPRYAAFQE 249 Query: 244 GEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFW 303 +F + +D CL ++GC+GP + N C +N +++ +++GH C GCA F Sbjct: 250 LDFARHIGEDG-----CLLELGCQGPVSNNDCPDLGYNGNLNYCLKAGHPCTGCAGELFP 304 Query: 304 DRGSFYSRVVDIPQMGTHSTADTV 327 Y D G DT+ Sbjct: 305 RP-VLYHLYDDPRLKGGLLQGDTI 327 >UniRef50_B2TM84 [Ni/Fe] hydrogenase, small subunit n=2 Tax=Clostridium botulinum RepID=B2TM84_CLOBB Length = 313 Score = 283 bits (723), Expect = 8e-75, Method: Composition-based stats. Identities = 88/305 (28%), Positives = 144/305 (47%), Gaps = 19/305 (6%) Query: 19 RSFLKYCSLAATSLGLGAGMAPKIAWALEN------KPRIPVVWIHGLECTCCTESFIRS 72 + ++K A G A ++ K +I +W+ C S + S Sbjct: 13 KDYMKNVG-CARGEGKPFKFAKEMIDKATEEIKARNKEKINAIWLETSGCFGEVISLLNS 71 Query: 73 AHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMF 132 P V+ +L+++ + ++ G +A E D + YIL V G P+ G++ Sbjct: 72 EMPDLPFVLKNLVNMTFFGSICGDQGEKAYERILDTLNSDKE-YILLVCGAIPINADGLY 130 Query: 133 CISSGR-----PFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKP 187 + + +E +K+AA A II+ GTCA +G AA+PN +QA + + + Sbjct: 131 TVLATYQGRKITAMELVKQAAQKAKYIISIGTCACYGGPTAAKPNVSQALSVKEYLMRND 190 Query: 188 IIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFV 247 II +PGCP P + Y++ + + D+D GRP+ FYG+ IH+ C +R FD G F Sbjct: 191 IINIPGCPANPVWTLGTVGYLINYGTI-DLDEEGRPVAFYGKTIHEICPKRKFFDKGIFA 249 Query: 248 QSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGS 307 + + CLY++GCKGP T C +RWN ++PI C+GCA GF D Sbjct: 250 KKLGNPE-----CLYELGCKGPITKVYCPISRWNQSDNWPIGDRTPCIGCARKGFPDAME 304 Query: 308 FYSRV 312 +++ Sbjct: 305 PFTKY 309 >UniRef50_Q46BG0 Methanophenazine-reducing hydrogenase, small subunit n=9 Tax=Methanosarcina RepID=Q46BG0_METBF Length = 411 Score = 282 bits (721), Expect = 2e-74, Method: Composition-based stats. Identities = 99/360 (27%), Positives = 162/360 (45%), Gaps = 46/360 (12%) Query: 8 YQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTE 67 ++ + + RR+F+K + SL L +A ALE VVW+HG+ + CT Sbjct: 15 FKNLDFMKMDRRTFIKAVGVLGASLFL-QTYKNDLAKALEFSE-TKVVWLHGVMDSGCTI 72 Query: 68 SFIRSAHPLAKDVILSL-ISLDYDDTLMAAAGTQA------------EEVFEDIITQYNG 114 S + P + + + L Y + LM G E V +DI+ + G Sbjct: 73 SMLDGGSPDIIEFLQEYNLKLLYHEVLMMQQGIFVDGKLANTSDLNSEIVLDDILEKEKG 132 Query: 115 KYILAVEGNPPLGEQG--MFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPN 172 Y+L EG G +G + + GR + E +AA A AI+A G CA+ G V +A+ + Sbjct: 133 -YVLVSEGAISNGPEGSGKYLMLGGRTYKEIYAKAAKNALAIVAIGNCATNGGVNSAKSD 191 Query: 173 PTQ--------------ATPIDKVIT-DKPIIKVPGCPPIPDVMSAIITYMVTFD-RLPD 216 + + I ++ +KP+I + GCP PD + I +V ++PD Sbjct: 192 IVELMDPRGVAFTMEDASKGILDLLGIEKPVINLTGCPTHPDWVFLTIGAVVLGKIKIPD 251 Query: 217 -----VDRMGRPLMFY--GQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGP 269 +D RP +F+ IHD C RR ++D GEF + CL+K+GCKGP Sbjct: 252 DLPYVLDHWKRPKVFFPPDHVIHDNCSRRGYYDRGEFELTVGGPK-----CLWKLGCKGP 306 Query: 270 TTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYSRVVDIPQMGTHSTADTVGL 329 T+ C++ WN +++ Q+G C+GC + GF D + + + + G+ Sbjct: 307 YTHADCATRNWNGHLNYCPQAGSPCIGCVQPGFPDSTRPFFVEFEKTGIVGTNITTIAGV 366 >UniRef50_Q0W5V7 F420-nonreducing hydrogenase (Membrane-bound), small subunit n=2 Tax=Euryarchaeota RepID=Q0W5V7_UNCMA Length = 388 Score = 280 bits (717), Expect = 5e-74, Method: Composition-based stats. Identities = 105/374 (28%), Positives = 158/374 (42%), Gaps = 34/374 (9%) Query: 15 GVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFIRSAH 74 G+ RR+FL + + A +P +A A+ + + ++W+ G C CT SF+ + Sbjct: 13 GLGRRAFL-ALAATTGAAAFLAMHSPGVAAAIADSRK-KLLWLRGSGCGGCTASFLNGGY 70 Query: 75 PLAKDVILSL-ISLDYDDTLMAAAG----------TQAEEVFEDIITQYNGKYILAVEGN 123 P + S+ + Y D LMA G + + + +G Y+L VEG Sbjct: 71 PDVLAALDSVGAVITYHDGLMAQQGITLDGVSKTPDTYNALKKLDLLIDSGDYVLVVEGA 130 Query: 124 PPLGEQGM--FCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPI-- 179 P G G +C + GR E AA A IIA GTCA++G + +A + T A + Sbjct: 131 IPNGPDGTGKYCTTGGRAVKEIFSEAAEKAETIIALGTCAAFGGISSAGRSVTDARGVAY 190 Query: 180 ----------DKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQ 229 ++ K +I VPGCP PD + +++ + VD RP F+ + Sbjct: 191 TGASRFNGILSELNMRKKVINVPGCPAHPDWFLLTLADVLSGAEVT-VDDYRRPAAFFSK 249 Query: 230 R-IHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPI 288 IHD C RR +D G+ + + CLY GCKG TY C RWN GVS Sbjct: 250 SAIHDTCTRRGSYDQGQRDTQFAGEG-----CLYGAGCKGMITYADCPVRRWNGGVSTCT 304 Query: 289 QSGHGCLGCAENGFWDRGSFYSRVVDIPQMGTHSTADTVGLTALGVVAAAVGVHAVASAV 348 +G C+GC E F + V+ + + + D LG GVHAV Sbjct: 305 LAGGPCVGCVEAEFPGAFMPFFNRVEDRSLISGTNVDLGAKVILGAAILGAGVHAVKRLA 364 Query: 349 DQRRRHNQQPTETE 362 + E + Sbjct: 365 IGDNDNEGDGDEEK 378 >UniRef50_Q1NRB7 Ni-Fe hydrogenase, small subunit:Twin-arginine translocation pathway signal n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NRB7_9DELT Length = 299 Score = 276 bits (707), Expect = 6e-73, Method: Composition-based stats. Identities = 91/304 (29%), Positives = 145/304 (47%), Gaps = 13/304 (4%) Query: 16 VTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFIRSAHP 75 + RR+FLK + A + G+ P A E ++++ GL CT C+ S +++A P Sbjct: 1 MDRRNFLKMAAALAAAFGVRGLPEPVAAALKEIDQVPKILYLQGLSCTGCSISLLQAASP 60 Query: 76 LAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCIS 135 ++I L + L + +G QA E+ I G+Y LA+EG P C+ Sbjct: 61 TPLEMITDYSQLAFHTDLSSTSGAQAMELINAFIDGEAGEYFLAIEGAVPGTMP-RACVI 119 Query: 136 SGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKP----IIKV 191 +PF L+RAA S +A G+CA G + AA NPT A + + + +I + Sbjct: 120 DHQPFASYLERAARTMSGAVAVGSCACDGGIPAAEGNPTGAIGLREFYRQRELEPLLIDI 179 Query: 192 PGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWD 251 GCP PD + IT++V LP + G P F+ +R+H+ C R F F + Sbjct: 180 RGCPIHPDWLWHTITHLVKVG-LPSLVN-GAPQAFFQRRLHELCPRYYDFQEEIFAEKMG 237 Query: 252 DDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGS-FYS 310 + CL+K+GC GP T+ C + WN G ++ I + C+GCA F + + Sbjct: 238 ERG-----CLFKLGCLGPITFADCPTRWWNGGRTWCIDTNAPCIGCASPDFARKKDLPFY 292 Query: 311 RVVD 314 R+ + Sbjct: 293 RLNE 296 >UniRef50_D1VJL8 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Actinobacteria (class) RepID=D1VJL8_9ACTO Length = 416 Score = 273 bits (697), Expect = 9e-72, Method: Composition-based stats. Identities = 84/373 (22%), Positives = 139/373 (37%), Gaps = 42/373 (11%) Query: 23 KYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGL-ECTCCTESFIRSAHPLAKDVI 81 K AA +AP+ A E++ I ++WI+ C + + + P +++ Sbjct: 30 KLGVGAAARERPAEQVAPERVPAWEDQAPIHLLWINAGLSCDGDSVALTAATQPSIEEIA 89 Query: 82 LSLIS-----LDYDDTLMAAAGTQ-----AEEVFEDIITQYNGKYILAVEGNPPLGE--- 128 L + + + +G + E F ++L VEG+ P Sbjct: 90 LGALPGLPKVAVHWPLIDFDSGPEQGADAFLEWFRKADRGELDPFVLVVEGSIPNERING 149 Query: 129 QGMFCISSGR-------PFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDK 181 G + L R A A A++A GTCA++G + A NPT A + Sbjct: 150 DGYWTGFGSDQATGQPITVNAWLDRLAPKALAVLAVGTCATYGGIHAMAGNPTGAMGVPD 209 Query: 182 VI-------TDKPIIKVPGCPPIPDVMSAIITYMV----TFDRLPDVDRMGRPLMFYGQR 230 + PI+ VPGCP PD +S I Y++ + +D RP +G Sbjct: 210 YLGWDWKSSAGIPIVCVPGCPIQPDNLSETIVYLLYQASGQAPMIPLDDQLRPRWLFGTT 269 Query: 231 IHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQS 290 +HD C R ++ G F ++ + CL K+GC GP W +GV Sbjct: 270 VHDGCDRAGFYEEGRFAHAYGEPE-----CLVKLGCWGPVVKCNVPKRGWMNGVGGCPNV 324 Query: 291 GHGCLGCAENGFWDRGSFYSRVVDIPQMGTHSTADTVGLTALGVVAAAVGVHAVASAVDQ 350 G C+ C GF DR + +D P S+ + + + + +H + Sbjct: 325 GGICIACTMPGFPDRFMPF---MDTPPGAKVSSGLSTVYGKVILNLRKITMHTADR--EP 379 Query: 351 RRRHNQQPTETEH 363 R R T + Sbjct: 380 RWRRPGDELLTGY 392 >UniRef50_D2ATL3 NADH ubiquinone oxidoreductase, 20 kDa subunit n=10 Tax=Bacteria RepID=D2ATL3_STRRD Length = 358 Score = 273 bits (697), Expect = 1e-71, Method: Composition-based stats. Identities = 77/353 (21%), Positives = 140/353 (39%), Gaps = 42/353 (11%) Query: 47 ENKPRIPVVWIHGL-ECTCCTESFIRSAHPLAKDVILSLIS-----LDYDDTLMAAAGTQ 100 + +P + ++WI+ C + + + P ++++L + + + +G Sbjct: 15 QEEPVVHILWINAGLSCDGDSVALTAATQPSIEEIVLGALPGLPKVAVHWPLIDFESGPM 74 Query: 101 -----AEEVFEDIITQYNGKYILAVEGNPPL---GEQGMFCISSGRPFI-------EKLK 145 E F ++L VEG+ P ++G +C P E L Sbjct: 75 QGADVFIEWFFKADRGELDPFVLVVEGSIPNESIKQEGYWCGFGNNPETGQPMTTSEWLD 134 Query: 146 RAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVI-------TDKPIIKVPGCPPIP 198 R A A+A++A GTCA++G + A NPT A + + PI+ VPGCP P Sbjct: 135 RLAPKATAVLAAGTCATYGGIHAMAGNPTGAMGVADYLGWDWRSKAGLPIVNVPGCPIQP 194 Query: 199 DVMSAIITYMV----TFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDA 254 D +S I Y++ + +D RP +GQ +H+ C R +++ G+F + Sbjct: 195 DNLSETILYLLYQVAGQAPMIPLDEALRPTWLFGQTVHEGCDRAGYYEQGQFATEYGSPK 254 Query: 255 ARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYSRVVD 314 CL K+GC GP W +G+ G C+ C GF D+ + +D Sbjct: 255 -----CLVKIGCWGPVVKCNVPKRGWMNGIGGCPNVGGICIACTMPGFPDKFMPF---MD 306 Query: 315 IPQMGTHSTADTVGLTALGVVAAAVGVHAVASAVDQRRRHNQQPTETEHQPGN 367 P S+ + ++ + + V + + R + T ++ Sbjct: 307 EPPGARVSSTVSGAYGSVIRTLRGITLKTVDK--EPKWRKKGRELLTGYKASW 357 >UniRef50_Q0RN51 Uptake hydrogenase small subunit (Hydrogenlyase) (Membrane-bound hydrogenase small subunit) n=23 Tax=Bacteria RepID=Q0RN51_FRAAA Length = 359 Score = 271 bits (694), Expect = 2e-71, Method: Composition-based stats. Identities = 81/348 (23%), Positives = 141/348 (40%), Gaps = 40/348 (11%) Query: 52 IPVVWIHGL-ECTCCTESFIRSAHPLAKDVILSLI----SLDYDDTLMAAA--GTQAEEV 104 + ++WI C T S ++ P +DVI +I ++ + +++ G + Sbjct: 20 VHILWISEGMSCDGDTVSVTAASQPAIEDVITGVIPGLPTVHLHNKVLSPTLGGEEFLAP 79 Query: 105 FEDIITQYNGKYILAVEGNPPLGE---QGMFCISSGRP-------FIEKLKRAAAGASAI 154 F ++L +EG+ P +G + P + R A A A+ Sbjct: 80 FRAAARGELEPFVLVIEGSIPNENINGEGYWTSFGNDPDTGQPLTINWWIDRLAPRAWAV 139 Query: 155 IAWGTCASWGCVQAARPNPTQATPIDKVITDK-------PIIKVPGCPPIPDVMSAIITY 207 IA GTCA++G + A NPT + + + PI+ VPGCP PD +T+ Sbjct: 140 IAIGTCAAYGGIHAMAGNPTGSMGLLDYLGRDFTSAGNLPIVNVPGCPVQPDDFMETLTW 199 Query: 208 MVTFD----RLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYK 263 ++ P +D RP +G+ +H+ C R +++ G+F + ++ C K Sbjct: 200 LLYHAAGTAPPPPLDDQHRPQWIFGRTVHEGCDRAGYYEQGDFAKDYNSPK-----CQVK 254 Query: 264 MGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYSRVVDIPQMGTHST 323 +GC GP W GV G C+ C GF D+ + +D+P + S+ Sbjct: 255 IGCWGPVVNCNVPKRGWMGGVGGCPNVGGICIACTMPGFPDKFMPF---MDMPPGASLSS 311 Query: 324 ADTVGLTALG-VVAAAVGVHAVASAVDQRRRHNQQPTETEHQPGNEDK 370 + + G V+ G+ + R RHN+ T + P K Sbjct: 312 ---LAVKPYGSVIRRLRGITNATVNREPRWRHNRDLLTTGYDPSYRPK 356 >UniRef50_A4YF94 NADH ubiquinone oxidoreductase, 20 kDa subunit n=8 Tax=cellular organisms RepID=A4YF94_METS5 Length = 322 Score = 271 bits (693), Expect = 2e-71, Method: Composition-based stats. Identities = 72/326 (22%), Positives = 142/326 (43%), Gaps = 27/326 (8%) Query: 53 PVVWIHGLECTCCTESFIRSAHPLAKDVIL-SLISLDYDDTLMAAAGTQAEEVFEDIITQ 111 ++W+ G C T S + ++ P + + + L + +L G +++ E II Sbjct: 3 NLLWLQGGACGGNTLSVLNASDPDILSFLYQNNVKLLWHPSLSQECGRDLKKILESIIEG 62 Query: 112 YNGKYILAVEGNPPLGEQG--MFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAA 169 IL EG+ G G F + +G+P + ++ A A+ I+A G CAS+G + AA Sbjct: 63 KINLDILLFEGSIVRGPAGKGTFNMFAGKPMMWWVREIAPQANYIVAVGDCASFGGIPAA 122 Query: 170 RPNPTQATPID--------------KVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLP 215 PNPT++T + + + P+I + GCP P+ + +T ++ + Sbjct: 123 DPNPTESTGLQFHRKEMSGFLGKDFRCKSGLPVINLSGCPVHPEWLITTLTLILRGEMNQ 182 Query: 216 D-VDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNA 274 + +D RP +FY C R+ +F + + ++G + +GC+G T ++ Sbjct: 183 EMLDEFNRPRIFYATTTQFGCPRQPYFTYKISTKEFG---HKEGCLFFDLGCRGSYTRSS 239 Query: 275 CSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYSRVVD---IPQMGTHSTADTVGLTA 331 C++ WN+ S + G C+GC E F +F+ + IP+ + +T Sbjct: 240 CNNILWNNQ-SSKTRVGTPCMGCTEFDFP-TFNFFKTEKNRSGIPRRLPLGVSKGAYVTF 297 Query: 332 LGVVAAAVGVHAVASAVDQRRRHNQQ 357 +A + + +++ + Sbjct: 298 -AAIARGAAPQFLERPLIRKKGDWIE 322 >UniRef50_C1SPM4 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SPM4_9BACT Length = 310 Score = 271 bits (693), Expect = 3e-71, Method: Composition-based stats. Identities = 83/304 (27%), Positives = 150/304 (49%), Gaps = 14/304 (4%) Query: 16 VTRRSFLKYCSLAATSLGLGAGMAPKIAW---ALENKPRIPVVWIHGLECTCCTESFIRS 72 ++RR FLK C + + +IA +++ R +V+I G CT C+ S + Sbjct: 2 LSRRDFLKRCRDISAVVFGAEVFGAQIAEGFMKIQSADRPQLVFIQGQSCTGCSTSLMYG 61 Query: 73 AHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMF 132 D I+ L+ + L + G + +++ + G +IL +EG+ P Sbjct: 62 NETDFIDFIMKLVRVQVHPNLSLSQGNGYLNMLDEVTSA--GGHILVLEGSIPAEM-KKA 118 Query: 133 CISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITD----KPI 188 C+ P + LK+ ASA++A G+C+ +G + A+ N T A I + + + KP+ Sbjct: 119 CMLGEEPLYDALKKHLEKASAVVASGSCSCFGGIPASGANETGAIDIVQYMRETGISKPL 178 Query: 189 IKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQ 248 IK+PGCP PD + + Y++ ++PD++ G P+ ++G IH+ C R +F +++ Sbjct: 179 IKIPGCPVHPDRLMGTVAYILGAGKMPDMED-GIPVQYFGDLIHNNCTRFQYFSQDIYLE 237 Query: 249 SWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGSF 308 + D CL K GC+G T + C+ RWN GV+ ++S C+GC + + + Sbjct: 238 DYAKDKHS---CLLKKGCRGTITKSDCALRRWNGGVNVCVESNAPCVGCINEKWPFKENI 294 Query: 309 YSRV 312 Y + Sbjct: 295 YLKF 298 >UniRef50_A1RXR6 Hydrogenase (NiFe) small subunit HydA n=3 Tax=Thermoprotei RepID=A1RXR6_THEPD Length = 423 Score = 271 bits (693), Expect = 3e-71, Method: Composition-based stats. Identities = 95/428 (22%), Positives = 168/428 (39%), Gaps = 79/428 (18%) Query: 10 AMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTESF 69 +++ ++RR FLK +AA L ++A A I +VW +C T + Sbjct: 2 SLKGISISRRDFLKMGGVAALLASLNWDELVRLAVAQAQSGSINIVWFEAQDCAGNTTAL 61 Query: 70 IRSAHPLAKDVILS--------LISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVE 121 I++ P DV+ + L + +T+M G A + ++L +E Sbjct: 62 IQATEPDLIDVLGGSFHLVGPGNVKLAFHETVMPEWGEGALSIARAAAQGKLDPFVLVLE 121 Query: 122 GNPPLGE-------QGMFCISSGR-----PFIEKLKRAAAGASAIIAWGTCASWGCVQAA 169 G+ P E +C +E ++R A A++ G CAS+G + A Sbjct: 122 GSFPQDEKAGGPPGSDSYCYIGDENGKVISCVEWMRRLLPRAVAVVTMGNCASYGGLVAN 181 Query: 170 R--------------PNPTQAT---------------------PIDKVITD--------- 185 + +PT A P + IT Sbjct: 182 KVLERVPGLPSSSWSDSPTGAVGFFDDPIRGIKGLVSTLPEAEPFRRFITGQCTLKPGEI 241 Query: 186 ----KPIIKVPGCPPIPDVMSAIITYMVTFD----RLPDVDRMGRPLMFYGQRIHDKCYR 237 +P + VPGCP + + +V + LP++D+ RP +G +H++C R Sbjct: 242 RPDCRPAMAVPGCPANGNGQLRALAALVLWAKGLLPLPELDKYWRPKFIFGNTVHEQCPR 301 Query: 238 RAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGC 297 + AG+F +++ R CLY +GCKGP + + W +GV P ++G C+GC Sbjct: 302 AGSYAAGDFRAYPGENSYR---CLYAVGCKGPISNCPWNKLGWVNGVGGPTRTGGVCIGC 358 Query: 298 AENGFWDRGSFYSRVVDIPQMGTHSTADTVGLTALGVVAAAVGVHAVASAVDQRRRHNQQ 357 GF D + + + P++ + G+ A+ + A VG+ AS ++R+ Sbjct: 359 TMPGFTDAYEPFYKPLQAPRVPSGLE----GVAAIAALLAGVGLAYGASKSIEKRKEEVA 414 Query: 358 PTETEHQP 365 E + Sbjct: 415 KEIKEVKA 422 >UniRef50_C8R2V0 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R2V0_9DELT Length = 305 Score = 268 bits (685), Expect = 2e-70, Method: Composition-based stats. Identities = 82/268 (30%), Positives = 133/268 (49%), Gaps = 13/268 (4%) Query: 52 IPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQ 111 ++++ GL CT C+ S +++ P +I L + L A +G QA E+ I Sbjct: 40 PKLLYLQGLSCTGCSISLLQADSPSPLSMITDYSQLVFHTDLSATSGAQAMELINSFIDG 99 Query: 112 YNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARP 171 G Y+LA+EG P G CI +PF + L+RAA S +A G+CA G + AA Sbjct: 100 QAGDYVLAIEGAIPAGMPE-ACIIDHKPFADYLERAARTMSGAVAIGSCACDGGIPAAEG 158 Query: 172 NPTQATPIDKVITDK----PIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFY 227 NPT A + + ++ P+I + GCP PD + IT++V P++ G P +F+ Sbjct: 159 NPTGAVGLAEFYRNRNINQPVINIRGCPVHPDWVWHTITHLVLVG-NPNLVN-GSPRVFF 216 Query: 228 GQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFP 287 +R+H+ C R F F + D CL+++GC GP T+ C + WN G ++ Sbjct: 217 ERRLHELCPRYYDFQEEIFAEKLGDRG-----CLFRLGCLGPITFADCPTRWWNGGRTWC 271 Query: 288 IQSGHGCLGCAENGFW-DRGSFYSRVVD 314 + + C+GCA F + + R+ + Sbjct: 272 VDTNAPCIGCASPKFARQKDLPFYRLSE 299 >UniRef50_C1DUE6 Hydrogenase-2, small subunit n=1 Tax=Sulfurihydrogenibium azorense Az-Fu1 RepID=C1DUE6_SULAA Length = 312 Score = 260 bits (665), Expect = 5e-68, Method: Composition-based stats. Identities = 78/308 (25%), Positives = 126/308 (40%), Gaps = 24/308 (7%) Query: 45 ALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEV 104 A K +VWI GL C + SF+ S + DV LS I++ Y M + + ++V Sbjct: 2 AGTKKGLKNLVWIQGLTCNGNSHSFL-SINDTMLDVFLSNINILYHP--MLTSEMEFKDV 58 Query: 105 FEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWG 164 ++ +++ L VEG + +F G E L + I+A G CA +G Sbjct: 59 YKLLLSGKESLNFLVVEGAVNTKKDEVF--FQGFDVFEILNNLKDKSDYILAVGNCACYG 116 Query: 165 CVQAARP-----------NPTQATPID-KVITDKPIIKVPGCPPIPDVMSAIITYMVTFD 212 A + D K + PII + GCP P+ + I + F Sbjct: 117 NFPALYNENVKGLQYRFKDKGGFLGEDFKTKSGYPIINITGCPAHPEWIVRTILS-LNFG 175 Query: 213 RLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTY 272 +D + RP FY HD C R +F+ + + ++G Y++GC+GP T+ Sbjct: 176 YDIKLDNLNRPKDFYMYLAHDGCIRNEYFE---WKVEAHEFGTKEGCLFYELGCRGPLTH 232 Query: 273 NACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYSRVVD--IPQMGTHSTADTVGLT 330 + C+ WN+ S +SG C+GC E F R ++ + IP+ + Sbjct: 233 SPCNKILWNEK-SSKTRSGMPCIGCTEFDFPLRSKYFETKTNIGIPEEVPLGVTKRAYIM 291 Query: 331 ALGVVAAA 338 GV Sbjct: 292 LSGVAKTF 299 >UniRef50_C0QPV6 Hydrogenase-2, small subunit n=7 Tax=Bacteria RepID=C0QPV6_PERMH Length = 306 Score = 259 bits (662), Expect = 1e-67, Method: Composition-based stats. Identities = 70/311 (22%), Positives = 117/311 (37%), Gaps = 27/311 (8%) Query: 53 PVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQY 112 ++WI GL C+ ++SF+ +P D I+L + + + ++ I Sbjct: 3 NLLWIQGLTCSGNSQSFLCGENPTVSDFFSE-INLLWHPEISYS--EDIMDILNGIYRDE 59 Query: 113 NGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPN 172 L +EG F + + + A IIA G CA G A N Sbjct: 60 IKLDFLIIEGAVTS--NKRFHRIGKYSIKYIINKLKSKADYIIAVGNCAVHGNYPALY-N 116 Query: 173 PTQATPIDKVITDK--------------PIIKVPGCPPIPDVMSAIITYMVTFDRLPDVD 218 P Q T I + K P+I + GCP P+ ++ + +++ +D Sbjct: 117 PDQITGIQFGLNGKKGLLPQKFRTKSGYPVINITGCPVHPEWITKTVLT-LSYGLDLKLD 175 Query: 219 RMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSST 278 RP Y HD C R +F+ + + ++G Y++GC+GP T+ C+ Sbjct: 176 SQNRPKELYMYLSHDGCTRNEYFEWKVEAEEFG---TKEGCLFYELGCRGPVTHAPCNRI 232 Query: 279 RWNDGVSFPIQSGHGCLGCAENGFWDRGSFYS--RVVDIPQMGTHSTADTVGLTALGVVA 336 WN G S ++G C+GC E F R ++ + + IPQ + GV Sbjct: 233 LWN-GRSSKTRAGMPCIGCTEFDFPYRENYLETKKYMGIPQDIPLGVTKRAYIMITGVAK 291 Query: 337 AAVGVHAVASA 347 Sbjct: 292 TFKNERLTKKL 302 >UniRef50_D2LGK5 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LGK5_RHOVA Length = 358 Score = 258 bits (660), Expect = 2e-67, Method: Composition-based stats. Identities = 80/350 (22%), Positives = 131/350 (37%), Gaps = 33/350 (9%) Query: 44 WALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVI-LSLISLDYDDTLMAAAGTQAE 102 A R+ ++W+ C C+ S + + P + L I + +L A+G Sbjct: 16 DATGRPARLSLLWLQSGGCGGCSMSLLNADSPDLFAALDLGRIDVLAHPSLSEASGEDYH 75 Query: 103 EVFEDIITQYNGKYILAVEGNPPLGEQG----MFCISSGRPFIEKLKRAAAGASAIIAWG 158 + I++ IL VEG G G +G+P ++ + AA A +IA G Sbjct: 76 ALIARILSGQQPLDILCVEGAILRGPNGTGRFHLQPGTGKPVMQLVAELAACAGHVIAIG 135 Query: 159 TCASWGCVQAARPNPTQATPID--------------KVITDKPIIKVPGCPPIPDVMSAI 204 +C ++G V AA N T+A + + + P I + GCP P + Sbjct: 136 SCTAYGGVSAAGDNVTEACGLAFEGAEPGGLLGPGFRSHSGLPAINIAGCPTHPGWIVET 195 Query: 205 ITYMVTFD-RLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYK 263 + + D+D GRP + +H C R ++ + + G + Sbjct: 196 LVQLGDGTFSASDLDTYGRPRFYADHLVHHGCTRNEFYEYKASAKEPG----QLGCLMEH 251 Query: 264 MGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYSRVVDIPQMGTHST 323 +GC G + C+ WN G I+ G+ C+GC E F +R + Y Sbjct: 252 LGCIGTQVHGDCNMRAWN-GEGSCIRGGYPCIGCTEPTFGERDAPYLETPKR-------G 303 Query: 324 ADTVGLTALGVVAAAVGVHAVASAVDQ-RRRHNQQPTETEHQPGNEDKQA 372 VGL A V + ++A A R R N PG +A Sbjct: 304 GIPVGLPTDMPKAWFVALASLAKAATPERLRKNALAERIAVPPGQASGKA 353 >UniRef50_D2QHS8 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QHS8_9SPHI Length = 326 Score = 254 bits (649), Expect = 3e-66, Method: Composition-based stats. Identities = 68/271 (25%), Positives = 117/271 (43%), Gaps = 23/271 (8%) Query: 53 PVVWIHGLECTCCTESFIRSAHPLAKDVILSL-ISLDYDDTLMAAAGTQAEEVFEDIITQ 111 V+W+ G C+ T SF+ + P D++ +++ + ++ G Q + DI++ Sbjct: 3 NVLWLQGGACSGNTMSFLNAEEPTVVDLVTDFGVNILWHPSIGLEIGDQVTHLLNDIVSG 62 Query: 112 YNGKYILAVEGNPPLGEQGMFCI--SSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAA 169 IL EG+ G G + + RP + ++ + ++A G CA+WG + A Sbjct: 63 RTQCDILVYEGSIIQGPNGTGTMNYFADRPMQDWVRDLSKVVGYVVAIGDCATWGGIPAV 122 Query: 170 RPNPTQATPIDKVIT--------------DKPIIKVPGCPPIPDVMSAIITYMVTFDRLP 215 PNP+++T + + P+I +PGCP PD ++ I+ + T Sbjct: 123 APNPSESTGMQFLKKAKGGFLGSDYVSKGGLPVINIPGCPAHPDWITQILVAIATGRIGD 182 Query: 216 DV-DRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNA 274 + D RP F+ + C F + R G Y++GC+GP T + Sbjct: 183 VLIDEYHRPKTFFTDFVQTGCTNVVSFAQ----KVDGGFGKRGGCLFYEVGCRGPMTRAS 238 Query: 275 CSSTRWNDGVSFPIQSGHGCLGCAENGFWDR 305 C+ WN S ++ H CLGC E GF Sbjct: 239 CNRILWNRQ-SSKTRANHPCLGCTEPGFPHH 268 >UniRef50_C0BH99 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Flavobacteria bacterium MS024-2A RepID=C0BH99_9BACT Length = 384 Score = 254 bits (648), Expect = 5e-66, Method: Composition-based stats. Identities = 70/310 (22%), Positives = 126/310 (40%), Gaps = 43/310 (13%) Query: 52 IPVVWIHGLECTCCTESFIRSAHPLAKDVILSLIS-----LDYDDTLMAAAGTQAEEVFE 106 + WI G C C+ + + + P ++++ I + + L AG + + F Sbjct: 20 VHAFWIAGGSCDGCSIATVGATSPSVENLLNGTIPGAAKVILHHPVLAVNAGEEFMKPFR 79 Query: 107 DIITQYNG-KYILAVEGNPPLGEQGMFCISSGR-----------------PFIEKLKRAA 148 G +++ EG+ ++GM + G P + R + Sbjct: 80 LAAKGELGAPFVVLCEGSI--MDEGMAAETGGYWSGLGADEDENGDPQPIPSSSWVTRMS 137 Query: 149 AGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDK-------PIIKVPGCPPIPDVM 201 A+A++A GTCA+WG + AA NPT + + ++ + P++ +PGC P D + Sbjct: 138 EHAAAVVAVGTCATWGGIPAAANNPTNSASVMDLLGEDYRSTLGLPVVNIPGCAPQGDNI 197 Query: 202 SAIITYMVTF----DRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARK 257 + I ++ F LP+ D +GRP + + +H C R ++ G F + D Sbjct: 198 TETIVSVLMFLNGLTPLPEFDELGRPSWLFDETVHRGCTRAGFYEEGNFAEEHGDKE--- 254 Query: 258 GYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYSRVVDIPQ 317 CL ++GC GP + + V + G C+GC GF D + + + P Sbjct: 255 --CLVEVGCWGPVVQCNINKRGAINHVGGCMNVGAPCIGCTMPGFPDSFAPFYKTP--PG 310 Query: 318 MGTHSTADTV 327 S V Sbjct: 311 TMVSSNISRV 320 >UniRef50_Q2W8A6 Ni,Fe-hydrogenase I small subunit n=4 Tax=Proteobacteria RepID=Q2W8A6_MAGSA Length = 384 Score = 251 bits (640), Expect = 4e-65, Method: Composition-based stats. Identities = 83/333 (24%), Positives = 134/333 (40%), Gaps = 26/333 (7%) Query: 38 MAPKIAWALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSL-ISLDYDDTLMAA 96 M ++A + + W+ C T SF+ S P + L I + Y +L Sbjct: 61 MMKEVAGGRRPGMNLNLYWLQCGGCGGDTMSFLNSETPDILQLFSGLGIDVVYHPSLSNT 120 Query: 97 AGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQ--GMFCISSGRPFIEKLKRAAAGASAI 154 + + E I + IL VEG G GM+ RP + + A A + Sbjct: 121 SQAEQHSQLEVISSGEMPLDILVVEGAVLRGPAGTGMYDTKGRRPKKDIVAALARQARFV 180 Query: 155 IAWGTCASWGCV-----------QAARPNPTQATPID-KVITDKPIIKVPGCPPIPDVMS 202 +A GTCA++G Q R P D + + P++ + GCP P V+S Sbjct: 181 VAAGTCAAFGGFGARTEIEATGLQFHRSEPGGFLGADFRAKSGLPVLNLSGCPCHPQVLS 240 Query: 203 AIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLY 262 +++T + T LP + + RPL +YG +H C R + + + +D+ KG + Sbjct: 241 SVLTALATGAELP-LAPLNRPLPWYGMMVHQGCTRNEYHE----YRVEEDNFGEKGCLFF 295 Query: 263 KMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYS-RVVDIPQMGTH 321 MGC GP C+ WN S ++G C GC F +F+ R ++ + Sbjct: 296 HMGCHGPLVTGPCNKLLWNQ-RSSKTRAGVPCFGCTSPEFPQDHAFFETRNIEGIPLDLP 354 Query: 322 STADTVGLTALGVVAAAVGVHAVASAVDQRRRH 354 + + V+AAA A + QRR Sbjct: 355 NGINRAHYMVYKVMAAA----AAPERLRQRRTD 383 >UniRef50_A6QAV6 Ni-Fe hydrogenase, small subunit HupS n=3 Tax=Epsilonproteobacteria RepID=A6QAV6_SULNB Length = 298 Score = 250 bits (638), Expect = 7e-65, Method: Composition-based stats. Identities = 80/303 (26%), Positives = 136/303 (44%), Gaps = 29/303 (9%) Query: 46 LENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVF 105 ++++ + ++W+ + C T SF+ HP ILS L + L +A Sbjct: 1 MQSRNKPKLLWLQSITCNGNTHSFLN--HPELFS-ILSHFELVHHPVLESAY------TL 51 Query: 106 EDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGC 165 E++I +L VEG E+G + SG LK+ A A II+ GTCA++G Sbjct: 52 ENVIKGEVPCDLLIVEGAF--KEEGF--LKSGVEVSSVLKKYADKAKYIISAGTCATFGG 107 Query: 166 VQAARPNPTQATPIDKVITDK---------PIIKVPGCPPIPDVMSAIITYMVTFDRLPD 216 + +P + + +K +I +PGCP P +S ++ + + +++P Sbjct: 108 IF-KENDPEEISGFCFDGEEKTPRYESYASKLISLPGCPIHPRWLSYLLLMIASGNKVP- 165 Query: 217 VDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACS 276 +D + RP+ YG +H C R +F+ + + ++G Y+ GC+GP T +C+ Sbjct: 166 LDTLHRPVELYGYTVHTGCTRNEYFEWKIDAKQFG---VKEGCLFYEQGCQGPYTRGSCN 222 Query: 277 STRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYSR-VVDIPQMGTHSTADTVGLTALGVV 335 WND S + G C GC E GF G + ++ + IP LT GVV Sbjct: 223 KILWND-TSSKTRVGTPCFGCTEPGFPQAGLYRTKTHMGIPATMPLGIPRRAYLTLTGVV 281 Query: 336 AAA 338 + Sbjct: 282 KSF 284 >UniRef50_A3MWH6 Nickel-iron dehydrogenase small subunit, N-terminal domain protein n=4 Tax=Thermoproteaceae RepID=A3MWH6_PYRCJ Length = 442 Score = 250 bits (638), Expect = 7e-65, Method: Composition-based stats. Identities = 102/436 (23%), Positives = 163/436 (37%), Gaps = 106/436 (24%) Query: 13 RQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFIRS 72 +TRR F++ SLAA L K A + +VW +C T + I++ Sbjct: 1 MVKITRRDFIRAGSLAAALSALNWSALVKAAGEAVRSGAVNIVWFEAQDCAGNTTAVIQA 60 Query: 73 AHPLAKDVILSL--------ISLDYDDTLMAAAGT------------------------- 99 P DV+L + L + +T+M GT Sbjct: 61 TDPSLLDVLLGTTPLVGPGTVRLIFHETVMPQWGTYHVKQASDVASEKILESYVEHQPPP 120 Query: 100 -QAEEVFEDIITQYNGKYILAVEGNPPL----------GEQGMFCISSGRPFIEKLKRAA 148 A ++ E+I G Y+L +EG+ P E G +C+ + LK Sbjct: 121 GDAMKILEEIAQGKYGPYVLVLEGSFPQEYGIEGSNIKQEGGYYCVVGHKTCTAWLKSLL 180 Query: 149 AGASAIIAWGTCASWGCV--------------QAARPNPTQATP---------------- 178 A A++A G CA++G + P+PT A Sbjct: 181 NNALAVVAVGNCAAYGGLVANKVLEPPPGFTYPTWSPSPTGAIGFFDDPIRGIKGAIHQP 240 Query: 179 -----------------IDKVITDKPIIKVPGCPPIPDVMSAIITYM---VTFDRLPD-- 216 + T KP + VPGCP + + + + PD Sbjct: 241 YFQPEIEPFRKYIDEGGVPDFKTIKPAVAVPGCPANGNGILRTLALLTLVAAGYLKPDVL 300 Query: 217 -----VDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTT 271 +D+ RP + +H++C R A + AG F + A G CL+++GCKGP + Sbjct: 301 ERKAFLDKYARPRFIFELTVHEQCPRAAWYAAGNFRPT---PGAGDGKCLFEVGCKGPIS 357 Query: 272 YNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYSRVVDIPQMGTHSTADTVGLTA 331 + W GV P ++G C+GC GF D + ++ P++ +TA VG+ Sbjct: 358 NCPWNKVGWVSGVGGPTRTGGVCIGCTMPGFTDAYEPFWAPLNAPRL-PDTTAIAVGVG- 415 Query: 332 LGVVAAAVGVHAVASA 347 GV A+G +A+A A Sbjct: 416 TGVALGALGAYALARA 431 >UniRef50_B9L8N0 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Nautilia profundicola AmH RepID=B9L8N0_NAUPA Length = 288 Score = 246 bits (628), Expect = 9e-64, Method: Composition-based stats. Identities = 64/310 (20%), Positives = 121/310 (39%), Gaps = 26/310 (8%) Query: 51 RIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIIT 110 ++ V+WI + C CT SF+ + ++ +Y ++ Sbjct: 4 KLNVIWIDAVTCYGCTHSFLNYKE---ISSLFEKVNFEYHPLFLSND------------L 48 Query: 111 QYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAAR 170 + +L VEG + G E + + A ++A GTCA +G + Sbjct: 49 EIKQCDLLIVEGALKNNYPRL-----GYSLNELISKLFFKAKKVLALGTCAVYGGMFGEG 103 Query: 171 PNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQR 230 + II +PGCPP PD ++ ++ M++ ++ +D + RP + Sbjct: 104 LMYNKEQKGHYYKCRDKIINLPGCPPHPDWIAFVL-DMISENKKIALDDLNRPKDIFAYT 162 Query: 231 IHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQS 290 H C R +F+ +++ ++G Y GC+GP T+++C+ WN+ VS ++ Sbjct: 163 SHMGCTRNEYFEWKIDAENFG---TKEGCLFYFQGCQGPFTHSSCNKVLWNE-VSSKPRA 218 Query: 291 GHGCLGCAENGFWDRGSFYS-RVVDIPQMGTHSTADTVGLTALGVVAAAVGVHAVASAVD 349 G C GC E F F + + IP + LT G+ + ++ Sbjct: 219 GTPCFGCTEPNFPKNDLFKTDTFMGIPANIPLGVSKRAYLTLSGIAKSLNNERLSCKLIN 278 Query: 350 QRRRHNQQPT 359 + N + Sbjct: 279 YKCGDNNEDK 288 >UniRef50_Q79IP7 Regulatory n=46 Tax=Proteobacteria RepID=Q79IP7_RALEH Length = 347 Score = 237 bits (605), Expect = 4e-61, Method: Composition-based stats. Identities = 76/330 (23%), Positives = 133/330 (40%), Gaps = 32/330 (9%) Query: 45 ALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSL-ISLDYDDTLMAAAGTQAEE 103 A + V+WI C C+ S + + ++ S I + + +L +G + + Sbjct: 10 ASAKPGVLNVLWIQSGGCGGCSMSLLCADTTDFTGMLKSAGIHMLWHPSLSLESGVEQLQ 69 Query: 104 VFEDIITQYNGKYILAVEGNPPLGEQG----MFCISSGRPFIEKLKRAAAGASAIIAWGT 159 + ED + + L VEG G G +G P IE + R AA A +A GT Sbjct: 70 ILEDCLQGRVALHALCVEGAMLRGPHGTGRFHLLAGTGVPMIEWVSRLAAVADYTLAVGT 129 Query: 160 CASWGCVQAARPNPTQATPID--------------KVITDKPIIKVPGCPPIPDVMSA-I 204 CA++G + A NPT A + + P+I V GCP P ++ + Sbjct: 130 CAAYGGITAGGGNPTDACGLQYEGDQPGGLLGLNYRSRAGLPVINVAGCPTHPGWVTDAL 189 Query: 205 ITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKM 264 D+D +GRP + Q +H C R +++ ++ + + G + M Sbjct: 190 ALLSARLLTASDLDTLGRPRFYADQLVHHGCTRNEYYE----FKASAEKPSDLGCMMENM 245 Query: 265 GCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYSRVVDIPQMGTHSTA 324 GCKG + C++ WN G + G+ C+ C E GF + G + + + Sbjct: 246 GCKGTQAHADCNTRLWN-GEGSCTRGGYACISCTEPGFEEPGHPFHQTPKV-------AG 297 Query: 325 DTVGLTALGVVAAAVGVHAVASAVDQRRRH 354 +GL A V + +++ + +R Sbjct: 298 IPIGLPTDMPKAWFVALASLSKSATPKRVK 327 >UniRef50_Q30QL6 Ni-Fe hydrogenase, small subunit n=2 Tax=Campylobacterales RepID=Q30QL6_SULDN Length = 293 Score = 236 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 66/298 (22%), Positives = 114/298 (38%), Gaps = 28/298 (9%) Query: 50 PRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDII 109 ++ ++W+ + C T SF+ H + L Y + ++ ++I+ Sbjct: 3 KKMRILWLSAITCNGNTHSFLNYPH---MEQFLDDFEFIYHPVI------DSKYSLQEIV 53 Query: 110 TQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQ-A 168 + +L +EG G P E +K + I+ GTCA++G + Sbjct: 54 SNEIECEVLIIEGAISEE-----FQRGGVPIFEIIKNYSKRVQKILTVGTCATFGGIFRE 108 Query: 169 ARPNPTQATPIDKVITD-------KPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMG 221 + T D+ I + GCP P+V+ + Y + L VD Sbjct: 109 SDYKDTAGMHFDQDRALHNFSDFLDKTISISGCPIHPEVLVNTL-YAIKKSVLLRVDNFL 167 Query: 222 RPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWN 281 RP FY +H+ C R +F+ + +G Y GC+ P T+ +C+ WN Sbjct: 168 RPKEFYAYTVHNGCTRNEYFE---YKVDNHKFGELEGCMFYDHGCQAPFTHGSCNKILWN 224 Query: 282 DGVSFPIQSGHGCLGCAENGFWDRGSFY-SRVVDIPQMGTHSTADTVGLTALGVVAAA 338 + V+ ++G C GC E F F + + IP+ V LT G+ A Sbjct: 225 E-VNSKTRAGVPCFGCTEPSFPRDNLFNTKKNMAIPEHLPLGVNKRVYLTLAGITKAF 281 >UniRef50_B1Y6B2 NADH ubiquinone oxidoreductase 20 kDa subunit n=3 Tax=Proteobacteria RepID=B1Y6B2_LEPCP Length = 313 Score = 232 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 72/324 (22%), Positives = 129/324 (39%), Gaps = 34/324 (10%) Query: 54 VVWIHGLECTCCTESFIRSAHPLAKDVILSL-ISLDYDDTLMAAAGTQAEEVFEDIITQY 112 ++W+ C + + + + P + ++ S I L + +L + + V + I+ Sbjct: 4 LLWLQTGSCGGDSLAILSADSPSLEQLLDSYSIELLWHPSLSNGHARRLDRVIDQILAGE 63 Query: 113 NGKYILAVEGNPPLGEQGM--FCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAAR 170 IL VEG+ G +G + G + ++ AA A A++A GTCA++G + AA Sbjct: 64 QALDILCVEGSIITGPRGTGLYDPWRGGAKMNLVRDLAAKAGAVVAMGTCAAYGGIHAAP 123 Query: 171 PNPTQATPID--------------KVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPD 216 PNP+ T + + + P+I V GCP P M+ + + Sbjct: 124 PNPSDCTGLQFDHEQPGGLLGPGWRSRSGMPVINVAGCPAHPHAMTQT-LAALAAGLPLE 182 Query: 217 VDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACS 276 +D + RP+ + +H C R + + D K + +GC+GP T C+ Sbjct: 183 LDAIHRPVSHFSTMVHQGCTRNEYHEYNI----EDSTPGGKACMFFNLGCQGPLTRAVCN 238 Query: 277 STRWNDGVSFPIQSGHGCLGCAENGFWDRGSFY--SRVVDIPQMGTHSTADTVGLTALGV 334 + WN GVS ++G C GC F G + ++ D+P + Sbjct: 239 TDLWN-GVSSKTRAGVPCFGCTSPNFPHDGDLFSTEKIGDVPIRLPLGVERPRYM----- 292 Query: 335 VAAAVGVHAVASAVDQRRRHNQQP 358 + SA R R+ + Sbjct: 293 ----AYKNLARSAAPPRVRNKKME 312 >UniRef50_A4YFB4 Nickel-iron dehydrogenase small subunit, N-terminal domain protein n=1 Tax=Metallosphaera sedula DSM 5348 RepID=A4YFB4_METS5 Length = 432 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 89/406 (21%), Positives = 128/406 (31%), Gaps = 104/406 (25%) Query: 14 QGVTRRSFLKYCSLAATSLGL---GAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFI 70 G+TRR FLK + A L G ++ A E I +VW C T +FI Sbjct: 1 MGLTRRDFLKVSGVTALGTSLALSGLSYEELLSKAQEADQPINIVWTGNGWCGGNTIAFI 60 Query: 71 RSAHPLAKDVI-------------------LSLISLDYDDTLMAAAGTQAEEVFEDIITQ 111 + +P +DV+ L +I+L Y LM A E + Sbjct: 61 DAMNPSVEDVVTGVYFNGKPITLRQPSIPDLGMINLVYHPILMP-QDNMAYATMEMALNG 119 Query: 112 YNGKYILAVEGNP-------PLGEQGMFCISSGRP-------FIEKLKRAAAGASAIIAW 157 ++L VEG G F S+GR E + A+A++A Sbjct: 120 ELDPFVLVVEGTMFDEFGVYYKKPSGSFWCSAGRKPDGSVLLCDEFVFNLMKKAAAVVAT 179 Query: 158 GTCASWGCVQAARP-----NPTQATPIDK------------------------------- 181 G CA++G + A +PT A + Sbjct: 180 GACATYGGIPATTNGLGQRSPTYAMGMLDDPYRGIYGFPYYVHQVYTQDLAPDIIDQDIY 239 Query: 182 -------------------VITDKPIIKVPGCPPIPDVMSAIIT----YMVTFDRLP--D 216 PII + PP D + + Y+ P D Sbjct: 240 SVTNSPVNTSWPGPSYHWLSTAGLPIISIAADPPAGDWIMRTLVSAVLYLRGLGPNPADD 299 Query: 217 VDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACS 276 +D RP FYG H C R F G F + D C Y +GCKG + Sbjct: 300 LDVFNRPKFFYGNETHQNCPRAGFFAQGIFAYEFGDPQ-----CTYSLGCKGTEANSPAP 354 Query: 277 STRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYSRVVDIPQMGTHS 322 W GV G C+ C GF D + + P + + + Sbjct: 355 LLGWVGGVGG-CTRGGVCIACTAPGFPDLYEPFYAPPNAPTIPSTT 399 >UniRef50_C8S807 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Ferroglobus placidus DSM 10642 RepID=C8S807_FERPL Length = 299 Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 52/344 (15%), Positives = 94/344 (27%), Gaps = 81/344 (23%) Query: 49 KPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDI 108 +I + + C+ C SF S+ + + Sbjct: 1 MKKIRLAFYTASGCSGCILSFFDLEEFFLSS---ERFSVVWAP--------MFTNSKLED 49 Query: 109 ITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQA 168 + + + +EG+ L E E +K + ++A GTCA +G V Sbjct: 50 LEKIERIDLTFIEGSIRLSEHE-----------EIVKILREKSEKVVALGTCAVFGGVPG 98 Query: 169 ARPNPTQATPIDKVITDKP-----------------------------IIKV----PGCP 195 + + V +I+V PGCP Sbjct: 99 LSNFYSDEEILSDVFDSDENAPKPRTLLDGKYELTLPEFKDEMKRVEEVIEVDHFVPGCP 158 Query: 196 PIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQR-IHDKCYRRAHFDAGEFVQSWDDDA 254 P + + II D D R + + C R+ + + Sbjct: 159 PSKNQLLKII----------DFDFEER--WIVEKTSVCSVCPRKV--EEIKVSAVKRAFE 204 Query: 255 ARKGYCLYKMG--CKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYSRV 312 G C G C GP T C + I+ C GC F + F ++ Sbjct: 205 KDDGRCFLLQGILCFGPLTPGNCEA--------ACIKVNVPCRGCYG-SFPNVRDFGAKF 255 Query: 313 VDIPQMGTHSTADTVGLTALGVVAAAVGVHAVASAVDQRRRHNQ 356 VD+ +A + + + +A+ ++ Sbjct: 256 VDLISSIAEKNIAEELSRKYPSLARVIYAYTLPAAIINKKVRKG 299 >UniRef50_Q58591 F420-non-reducing hydrogenase vhu subunit G n=13 Tax=Methanococcales RepID=VHUG_METJA Length = 288 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 46/280 (16%), Positives = 78/280 (27%), Gaps = 77/280 (27%) Query: 52 IPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQ 111 + V I C+ C S + L + +L + + Y + D Sbjct: 6 VKVGMIQLCGCSGCHISLLDLHDKLLE--VLPNLEIVYAPII------------ADPKEI 51 Query: 112 YNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARP 171 G + VEG + + +IAWGTCA++G + Sbjct: 52 PEGIDVFLVEGGIRNEHDEH-----------LIHEIREKSKIVIAWGTCAAYGGIPGLGN 100 Query: 172 NP------------------------------TQATPIDKVITDKPIIKVPGCPPIPDVM 201 PI I +PGCPP P ++ Sbjct: 101 LYKKEELLNYVYSTDSTENKGEIPSEEIPPLEEYVKPIKDFIKVD--YTIPGCPPTPKMI 158 Query: 202 SAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCL 261 + I ++ + + + D+C R+ E + + CL Sbjct: 159 ADAIIALLNGEEP----------KLPTKIVCDECPRKKENVFPETFKRTHEGRPDPERCL 208 Query: 262 YKMG--CKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAE 299 ++ G C G T C + +G C GC Sbjct: 209 FEQGYTCLGFATRAGCGAK--------CPSAGVPCRGCFG 240 >UniRef50_D2BHA4 Nickel-dependent hydrogenase, group 3, small subunit n=5 Tax=Dehalococcoides RepID=D2BHA4_DEHSV Length = 312 Score = 162 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 51/290 (17%), Positives = 84/290 (28%), Gaps = 66/290 (22%) Query: 52 IPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQ 111 + V C C S + PL +L + + + LM + + I + Sbjct: 2 VRVAEEWFAVCGGCELSILDIGEPLLD--VLPNLKIVHMPVLMDHK--LLGQKGDGIKYE 57 Query: 112 YNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARP 171 + + G E E I+A GTCA +G + A Sbjct: 58 IPEADLGIITGGIRNEEN-----------RELALEMRKKCKLIVALGTCACFGGIPALAN 106 Query: 172 ---------------------NPTQATP----IDKVITDKPIIKV----PGCPPIPDVMS 202 +P +D+V II V PGCPP P + Sbjct: 107 LSTTEDMLKQVFSKEKGTDPASPPGDKSLPKMLDRVYAVDEIITVDIHLPGCPPTPAHIV 166 Query: 203 AIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCY--RRAHFDAGEFVQSWDDDAARKG-- 258 ++T ++ + + D C R G + + G Sbjct: 167 ELLTAVLAGKT----------FALPERSVCDTCPTIREKQSTGGSIKRPLQNAQFTPGRY 216 Query: 259 ---YCLYKMG--CKGPTTYNACSSTRW---NDGVSFPIQSGHGCLGCAEN 300 CL + G C GP T C+ ++ + I++ C GC Sbjct: 217 DNMRCLNEQGLFCLGPVTKAGCNRILGADPSEEIPRCIKAYMPCRGCFGP 266 >UniRef50_Q8TYW2 Coenzyme F420-reducing hydrogenase, gamma subunit n=2 Tax=Methanopyrus kandleri RepID=Q8TYW2_METKA Length = 305 Score = 159 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 52/284 (18%), Positives = 83/284 (29%), Gaps = 74/284 (26%) Query: 49 KPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDI 108 + + C C S + L D++ I ++Y V D Sbjct: 1 MGKATIATAQLSSCVGCHVSLLDLHEKLL-DLLEDAIEIEYC------------YVLVDQ 47 Query: 109 ITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQA 168 + +EG+ E +E + A ++A GTCA +G V Sbjct: 48 KEIPEHVNVAVIEGSIRNEED-----------LEVAEELREAADIVVAVGTCACYGGVHG 96 Query: 169 ARP-----------------------NPTQATP--IDKVITDKPIIKV----PGCPPIPD 199 P + P V +I V PGCPP P+ Sbjct: 97 LANLYQLDDILEWVFKETPTTDDEGETPEEVVPELFGYVRPLPEVIDVDYMLPGCPPKPE 156 Query: 200 VMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYR-RAHFDAGEFVQSWDDDAARKG 258 ++ +IT ++ DR P++ + ++C R + E Sbjct: 157 SIAEVITAILE-DREPELPTTN---------LCEECPREKEDIPIEEIKFRTGQGRPDPD 206 Query: 259 YCLYKMG--CKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAEN 300 CL + G C GP T C + G C GC Sbjct: 207 KCLLEQGYPCMGPATVAGCGA--------ACPSRGLSCRGCNGP 242 >UniRef50_B1L5Y5 Coenzyme F420-reducing hydrogenase, gamma subunit n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L5Y5_KORCO Length = 319 Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats. Identities = 43/296 (14%), Positives = 83/296 (28%), Gaps = 76/296 (25%) Query: 49 KPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDI 108 + + + C C E+ + A L ++ + M E+V + Sbjct: 1 MAKAKIAFYWCASCGGCEEAQVDLADKLFD--LIEAADIVLWPVAMDFKKEDVEKVGDGS 58 Query: 109 ITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQA 168 I + + G E E +K + +IA+G+CA G + A Sbjct: 59 I------DVAIINGGIRTSEHE-----------EMVKLLRRKSKLVIAYGSCAHMGGIPA 101 Query: 169 ARPNPTQATPIDKVITDKPII--------------------------------------- 189 T+ + + V + P + Sbjct: 102 LANAYTRESILKYVYEEAPTVTNPEGKRPKTRVSVDGMDFELPEFLEYLDPLDAVIDVDY 161 Query: 190 KVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAG---EF 246 +PGCPP P++ ++ +++ + P G + + +C + Sbjct: 162 YIPGCPPTPEITWEAVSSILSGNLPPKGHVFGS-----DRALCYECPLNETKPEKVTIDT 216 Query: 247 VQSWDDDAARKGYCLYKMG--CKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAEN 300 ++ C G C GP T C + I+ C GC Sbjct: 217 IKRVHQTELDPNKCYLTQGVLCMGPVTRGGCKAL--------CIKGNMPCTGCFGP 264 >UniRef50_C8X546 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X546_DESRD Length = 334 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 55/307 (17%), Positives = 88/307 (28%), Gaps = 79/307 (25%) Query: 49 KPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDI 108 R+ + C C S + + L + + ++ + Y + + E + E Sbjct: 2 SRRMSIAMNWAGACGGCDVSLLDTQGKLLE--LTAVADVVYWPVALDYKRSDLEALPEKS 59 Query: 109 ITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQA 168 + I G EQ E +R ++A+G CA G + Sbjct: 60 V------DIGLFNGVVRTSEQ-----------AEDARRLRERCRVLVAYGACACHGGIPG 102 Query: 169 ARP-------------------NPTQATPIDK----------------VITDKPIIKV-- 191 NP Q P + V ++ V Sbjct: 103 LANQSDREEIFRVAYQDTVSTDNPDQIRPQQRTPVPGGEVTLPAFHDSVRALHQVVDVDY 162 Query: 192 --PGCPPIPDVM---SAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEF 246 PGCPP P+ + ++ D LP + P + +C R AG Sbjct: 163 FLPGCPPTPERILDLLGVVQAYNAGDDLPPAGSILAPEA----TLCQECPRAETRRAGRM 218 Query: 247 VQ--SWDDDAARKGYCLYKMG--CKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAE--N 300 + + A C + G C GP T C S I C GC Sbjct: 219 PRLYRPHEIVADPETCFLEQGVICMGPFTRGGCG--------SACITVNMPCRGCFGPAP 270 Query: 301 GFWDRGS 307 G +D G+ Sbjct: 271 GVYDPGA 277 >UniRef50_C9R9W3 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Ammonifex degensii KC4 RepID=C9R9W3_AMMDK Length = 319 Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 47/306 (15%), Positives = 86/306 (28%), Gaps = 78/306 (25%) Query: 49 KPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDI 108 ++ + +C C + + + I+ + + A ++ E Sbjct: 2 AEKLKIASYWAADCGGCDVAILDTHEKFLD--IVQAADIVFMPI--------AVDIKEKD 51 Query: 109 ITQYNGKYI--LAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCV 166 + + YI G E K + ++A+G+CA G V Sbjct: 52 VEAFPDGYIDVCFFHGAIRNSENEH-----------MAKLLRRKSKVLVAFGSCAMMGGV 100 Query: 167 QAARP-------------------NPTQATP----------------IDKVITDKPIIKV 191 NP + P ++V T ++ V Sbjct: 101 PGLANFKDREGILSRVYFESPSTDNPDKVLPQTETQVREGVLTLPAFYEEVKTLADVVDV 160 Query: 192 ----PGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFV 247 PGCPP + + +V + P G + + + ++C R + Sbjct: 161 DYFMPGCPPASHQIVNVFQAIVAGNLPPK----GSIVGASTKSVCEECSRIKENKTIKRF 216 Query: 248 QSWDDDAARKGYCLYKMG--CKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAEN--GFW 303 + CL + G C GP T C + + C GC G Sbjct: 217 YRVHEIIPDPERCLLEQGIPCMGPATRGGCGA--------ACPVANQPCRGCYGPLDGVI 268 Query: 304 DRGSFY 309 D G+ Y Sbjct: 269 DHGAKY 274 >UniRef50_D2REQ3 NADH ubiquinone oxidoreductase 20 kDa subunit n=2 Tax=cellular organisms RepID=D2REQ3_ARCPR Length = 321 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 49/348 (14%), Positives = 101/348 (29%), Gaps = 79/348 (22%) Query: 52 IPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYD-DTLMAAAGTQAEEVFEDIIT 110 + + ++ C C + + + L L + + + T+ E + + I Sbjct: 3 LKLAYLLVGGCGGCDMAVVDLSEKLVDA--LEHLEIVFWAPTVADVKYKDLEAMPDQSI- 59 Query: 111 QYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAAR 170 + + G E +K I+A+G CA+ G + Sbjct: 60 -----DLGLISGMVRNKENEH-----------LVKVMRQKCKIIVAFGICAALGGIPGMA 103 Query: 171 P-------------------NPTQATP----------------IDKVITDKPII----KV 191 NP P +D+V +I V Sbjct: 104 NMHKNEELFENAYIKSPSTDNPNNVIPQPVSKEGEFELTLPEFLDRVKPIDEVIEVDYYV 163 Query: 192 PGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRA-----HFDAGEF 246 GCPP D ++ ++ ++T + P + G+ + D C R + + Sbjct: 164 GGCPPHHDHVAKVVEAVITGNLPPKGS-----WITNGKAVCDVCARNPAVKGKTREFVKE 218 Query: 247 VQSWDDDAARKGYCLYKMG--CKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWD 304 V+ + + CL G C GP T C + + C GC Sbjct: 219 VKRMHEGIPDEEECLLNQGYLCLGPVTQGDCGAL--------CPKVNIRCAGCGGPIPPT 270 Query: 305 RGSFYSRVVDIPQMGTHSTADTVGLTALGVVAAAVGVHAVASAVDQRR 352 R + + + + V+ + +++ A+ ++ Sbjct: 271 RDFGLRAISALGSILADENVTDQLIKKYPVLTKILYRYSLPGAMINKK 318 >UniRef50_B1I576 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I576_DESAP Length = 317 Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 47/323 (14%), Positives = 90/323 (27%), Gaps = 75/323 (23%) Query: 49 KPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDI 108 ++ + C C + + + + ++ + + + E + Sbjct: 1 MSKLKLASYWAAACGGCDVAILDIHEKIVD--VAAVADIVFWPIAVDFKYADVEGYEDGF 58 Query: 109 ITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQA 168 I + G E K + ++A+G+CA G + Sbjct: 59 I------DVCLFHGAIRNSEGEH-----------VAKLLRKKSKVMVAFGSCAISGGIPG 101 Query: 169 ARP-------------------NPTQATP----------------IDKVITDKPIIKV-- 191 NP + P +V + ++ V Sbjct: 102 LANFKQKNDIFYRVYIESQSTQNPEKVYPQTHYAVPEGVLELPEFYKEVKSLSDVVDVDY 161 Query: 192 --PGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQS 249 PGCPP + A+I + + P G + Q + + C R + Sbjct: 162 FMPGCPPTSAQIWAVIQVIASGALPPK----GAFVGCENQTLCNTCTRTKTDKKVKKFYQ 217 Query: 250 WDDDAARKGYCLYKMG--CKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAEN--GFWDR 305 CL + G C GP T C + + + C GC G D+ Sbjct: 218 PYQIITDPEKCLLEQGLTCMGPVTRAGCG--------NQCVSANQPCTGCYGPVDGVIDQ 269 Query: 306 GSFY-SRVVDIPQMGTHSTADTV 327 G+ Y S + + + AD + Sbjct: 270 GAKYISALASVVDADSPDEADRI 292 >UniRef50_A2BMI5 NiFe hydrogenase n=1 Tax=Hyperthermus butylicus DSM 5456 RepID=A2BMI5_HYPBU Length = 506 Score = 154 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 49/175 (28%), Positives = 83/175 (47%), Gaps = 8/175 (4%) Query: 184 TDKPIIKVPGCPPIPDVMSAIITYMVTFD----RLPDVDRMGRPLMFYGQRIHDKCYRRA 239 + KP + VPGCP + +T ++ + LP++D+ RP + +G +H++C R Sbjct: 333 SCKPAVAVPGCPSNGNAQLKTLTNLILWVKGELPLPELDQYWRPKIIFGGSVHEQCPRNE 392 Query: 240 HFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAE 299 + AG + + G CL+ +GCKGP + + W +GV P ++G C+GC Sbjct: 393 KYRAGILRSEPGEPS---GACLFSVGCKGPISNCPYNKIGWVNGVGGPTRTGGVCIGCTM 449 Query: 300 NGFWDRGSFYSRVVDIPQMGTHSTADTVGLTALGV-VAAAVGVHAVASAVDQRRR 353 GF D Y + + P S A + A V V AA G+ +A ++ + Sbjct: 450 PGFMDAYEPYYKPLPAPVKPEASAATELAAGAAVVGVLAAYGIRKLAGGEKEKEK 504 Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 54/150 (36%), Gaps = 16/150 (10%) Query: 16 VTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFIRSAHP 75 ++RR FLK A L + A+A I +VW +C T S I++ P Sbjct: 6 LSRRQFLKLAGTTALLASLDWRKLIRRAFAELETGGISLVWFEAQDCAGDTTSLIQATEP 65 Query: 76 LAKDVILSLIS--------LDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLG 127 +V+ L + L + +T+M G + + Y+L +EG P Sbjct: 66 DIVEVLAGLTNLTPPGAVVLPFHETVMPEWGFGSIAHLLLALGGVYDPYVLILEGAMPPD 125 Query: 128 EQ-------GMFCISSG-RPFIEKLKRAAA 149 E M C +E L++ Sbjct: 126 EDLTGIKGTNMLCYIGDYETVMESLEKLRR 155 >UniRef50_A0LP54 NADH ubiquinone oxidoreductase, 20 kDa subunit n=7 Tax=Deltaproteobacteria RepID=A0LP54_SYNFM Length = 324 Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats. Identities = 46/280 (16%), Positives = 81/280 (28%), Gaps = 65/280 (23%) Query: 59 GLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYIL 118 C C S + + +L I + + L + E+ I Sbjct: 10 LSSCAGCEISMLNMGGLFLE--LLKEIRIVHMPLLFDHKYFG--QAGEENFIGIPEADIG 65 Query: 119 AVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATP 178 V G EQ +E + A ++A GTCA+ G + A + Sbjct: 66 IVSGGIRNEEQ-----------LEVALKVRAQCRILVALGTCATHGGIPALMNRYSDEDL 114 Query: 179 IDKVITDKPI----------------------------IKVPGCPPIPDVMSAIITYMVT 210 + + + GCPP PD + + + Sbjct: 115 FRRYYRTSETTEAAAPPNEVVPRFLDRTYALDEKARVDVYMAGCPPHPDYL-GAMFRTLL 173 Query: 211 FDRLPDVDRMGRPLMFYGQRIHDKCY-RRAHFDAGEFVQSW-------DDDAARKGYCLY 262 + P++ + + D C RR + ++ + ++ + CL Sbjct: 174 DGQWPEMPT---------KSVCDTCPTRREGKGNVQKIRRFTRSARFQNEKPLSEMKCLL 224 Query: 263 KMG--CKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAEN 300 + G C GP T C+ N V I + C GC Sbjct: 225 EQGLLCMGPVTRAGCAGLHGN--VPMCISARVPCRGCFGP 262 >UniRef50_Q50782 F420-non-reducing hydrogenase subunit G n=15 Tax=Euryarchaeota RepID=MVHG_METTH Length = 308 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 47/287 (16%), Positives = 84/287 (29%), Gaps = 77/287 (26%) Query: 49 KPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDI 108 +I + + C+ C S + ++ ++ LM Sbjct: 2 AEKIKIGTMWLGGCSGCHLSIADFHEKIID--VMEHADFEFSPVLMDTKYD--------- 50 Query: 109 ITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQA 168 + ++ +EG E E + A +I++GTCA +G + Sbjct: 51 --EIPELDVVIIEGGIVNDEN-----------REFAEELREKAKFVISYGTCAVYGGIPG 97 Query: 169 AR-------------------PNPTQATPIDK-------VITDKPIIK----VPGCPPIP 198 R PN P + V +I VPGCPP Sbjct: 98 LRNLWDKDEVIEEAYINSITTPNEEGVIPSEDVPHLEGRVKPLGEVIDVDFEVPGCPPRS 157 Query: 199 DVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFD--AGEFVQS-WDDDAA 255 DV + + ++T + + + + C R + A +F++ ++ Sbjct: 158 DVAAEAVMALLTGEEIE----------LPETNLCEVCPREKPPEGLAMDFIKRQFEVGKP 207 Query: 256 RKGYCLYKMG--CKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAEN 300 CL G C GP T + C + C GC Sbjct: 208 EDDLCLIPQGLICMGPATVSICGAE--------CPSIAIPCRGCYGP 246 >UniRef50_Q0W6J6 Coenzyme F420-non-reducing hydrogenase (Methyl viologen-reducing hydrogenase), gamma subunit n=2 Tax=Euryarchaeota RepID=Q0W6J6_UNCMA Length = 305 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 44/287 (15%), Positives = 74/287 (25%), Gaps = 81/287 (28%) Query: 49 KPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDI 108 ++ V C C S + + L IL I Y LM Sbjct: 1 MSKVKVAETWIGACAGCEISVLDTHEALLP--ILDKIEFVYIPVLM-------------D 45 Query: 109 ITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQA 168 + V G + + +L ++A G+CA +G Sbjct: 46 TKHIPKATVGIVSGCVRNSDN-----------LHELLEMRKNVDILVALGSCACFGGTPG 94 Query: 169 ARPNPT---------------------------------QATPIDKVITDKPIIKVPGCP 195 T A P+ + +I PGC Sbjct: 95 MANLYTPEQLLEEVYVTTKSTKNEIQRHPYMDGLPTLLPDAKPLSDYVKVDAMI--PGCG 152 Query: 196 PIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAA 255 P P +++ I ++ + + D+C R + + + Sbjct: 153 PRPAMIAQAILSLLGAAE----------YKLSTKSVCDECAREKSERNLKKILRPFEGTI 202 Query: 256 RKGYCLYKMG--CKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAEN 300 + CL++ G C G T C + SG C GC Sbjct: 203 DEKKCLFEQGYLCSGSATRAGCGAM--------CPSSGVACRGCFGP 241 >UniRef50_B1ZXG1 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZXG1_OPITP Length = 334 Score = 150 bits (378), Expect = 9e-35, Method: Composition-based stats. Identities = 48/296 (16%), Positives = 82/296 (27%), Gaps = 76/296 (25%) Query: 49 KPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDI 108 P+ V + C C E+ + A + ++ + + + M + + + Sbjct: 1 MPKPKVAFYWCAACGGCEEAIVDFAEDILG--VIEAVDIVFWPVAMDFKKKDVDALPDQG 58 Query: 109 ITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQA 168 IT + G EQ E + + +IA+G CA G + Sbjct: 59 ITA------TFLNGAIRTSEQE-----------EMAQLLRRKSQFLIAYGACAHLGGIPG 101 Query: 169 ARPNPTQATPIDKVITDKPIIK-------------------------------------- 190 + + V P I Sbjct: 102 LANQFDREQLLSYVYEQTPTIDNPTHVRPQPAHQNNGHSLTLPEFRHTVRSLDQVVAVDY 161 Query: 191 -VPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQS 249 +PGCPP P + A IT ++ +LP + P + + ++C R+ A Sbjct: 162 YIPGCPPTPKITKAAITALLE-GKLPPRGSVLAPDVA----LCNECARKPSKPATLSFTE 216 Query: 250 WDDDAA---RKGYCLYKMG--CKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAEN 300 + CL G C GP T C + C GC Sbjct: 217 FKRPHLAKIDPDLCLLAQGFVCMGPATRAGCEAL--------CPAGNMPCTGCFGP 264 >UniRef50_B4SFA2 NADH ubiquinone oxidoreductase 20 kDa subunit n=10 Tax=Chlorobiaceae RepID=B4SFA2_PELPB Length = 258 Score = 144 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 48/280 (17%), Positives = 84/280 (30%), Gaps = 80/280 (28%) Query: 38 MAPKIAWALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAA 97 M IA + R+ + C C LA L+L+ + L + Sbjct: 1 MGELIAHQGVSFERLKIASFDFTCCEGCQLQLANRESTLAD--FLNLLDIRNFRELSSEQ 58 Query: 98 GTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAW 157 I +EG+ ++ +E+L + A ++A+ Sbjct: 59 HDDY--------------DIALIEGSISRQDE-----------VERLLKIRQQAKILVAF 93 Query: 158 GTCASWGCVQAARPNPTQATPIDKVITDKPI---------------IKVPGCPPIPDVMS 202 GTCA +G + + + ID V PI + +PGCP + Sbjct: 94 GTCACFGGINSLKNRFPAREMIDAVYPGMPIETLPVRKISDVVKVDLSIPGCPVDKREVE 153 Query: 203 AIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLY 262 I+ +V ++ + +C A+ CL+ Sbjct: 154 RIVVSLVRGSQI----------TLPKYPVCVEC------------------KAQLNTCLF 185 Query: 263 KMG--CKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAEN 300 ++G C GP T C++ CLGC Sbjct: 186 ELGEICLGPITRAGCNAV--------CTTGKTPCLGCRGP 217 >UniRef50_B5YFX1 F420-non-reducing hydrogenase subunit G n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YFX1_THEYD Length = 318 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 47/300 (15%), Positives = 85/300 (28%), Gaps = 81/300 (27%) Query: 49 KPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDI 108 + + + C C + + + + DV L++ + + T+ E + + Sbjct: 1 MSKPKLAYYLAGGCGGCDIAVVDISE-MLVDVALAVDIVFWAPTVADVKYKDLEAMPDGS 59 Query: 109 ITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQA 168 I + GN E K +IA+G CA+ G ++ Sbjct: 60 I------DVGLFTGNVRNSEHEH-----------IAKVLRNKCKVLIAFGICAACGGIKG 102 Query: 169 ARPNPT-----------------------------------------QATPIDKVITDKP 187 T A P+D+V+ Sbjct: 103 LVNLHTTDELLDKAYVNTFSTDNPNKELPQTTCVVDGKYELTLPTLMYARPLDEVVKVD- 161 Query: 188 IIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEF- 246 + GCPP + + A T +++ P + G+ + + C R Sbjct: 162 -YYIGGCPPHYEHVKAAFTALLSGQLPPPGS-----WITMGKAVCEVCDRNPVLKGKPKK 215 Query: 247 ----VQSWDDDAARKGYCLYKMG--CKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAEN 300 V+ D A + CL + G C GP T C + + C GC Sbjct: 216 LATEVKRTIDGAPSEDGCLLEEGYLCLGPVTQGDCGAK--------CPAANIPCRGCGGP 267 >UniRef50_B5EQ53 NADH ubiquinone oxidoreductase 20 kDa subunit n=10 Tax=Proteobacteria RepID=B5EQ53_ACIF5 Length = 265 Score = 141 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 51/336 (15%), Positives = 98/336 (29%), Gaps = 91/336 (27%) Query: 48 NKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFED 107 + + C C +F+ L + L+ + + A AG + Sbjct: 2 AAAKPRLAVHKFSSCDGCQLAFLNLGEDLL--RLAELVEIVHF----AEAGPVDPDAV-- 53 Query: 108 IITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQ 167 I VEG+ E E++++ + +I+ G CA+ G +Q Sbjct: 54 -------VDIAFVEGSVSTPEDE-----------ERIQKIRKNSRHLISIGACATAGGLQ 95 Query: 168 AARPNPTQATPIDKVITDKPII-----------KVP------GCPPIPDVMSAIITYMVT 210 A R I ++ I VP GCP + + ++ Sbjct: 96 ALRNLADGPGWIAEIYAQPEHIHSLATSTPIAAHVPVDLELWGCPVNGRQVLGAVRALL- 154 Query: 211 FDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMG--CKG 268 F+ +P +++ ++ +C R + L G C G Sbjct: 155 FEVVPALEK---------DKVCLECKR-----------------HQAVCVLVAKGLPCMG 188 Query: 269 PTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYSRVVDIPQMGTHSTADTVG 328 P T C + + G C C + + +G +G Sbjct: 189 PVTLTGCGAL--------CPRFGRDCYACYGP---------AENPNATALGRRLEG--LG 229 Query: 329 LTALGVVAAAVGVHAVASAVDQRRRHNQQPTETEHQ 364 L V + +++ A A + RH ++ Sbjct: 230 LVPEAVARRFLFINSGAPAFAEAGRHWREQVHDPKP 265 >UniRef50_Q2IH66 Methyl-viologen-reducing hydrogenase, delta subunit n=4 Tax=Anaeromyxobacter RepID=Q2IH66_ANADE Length = 491 Score = 140 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 50/294 (17%), Positives = 83/294 (28%), Gaps = 76/294 (25%) Query: 51 RIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIIT 110 + V + C C E+ + A +L + + E + + Sbjct: 168 KPRVAFYWNASCGGCEEAVVDLGDGFAG--LLERVEVVLWPVATDHKRADVEALPD---- 221 Query: 111 QYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAAR 170 G + V G L EQ E + A ++A+G CA G V Sbjct: 222 --GGIDLAFVNGAVRLDEQE-----------EWARLLRRKARTVVAFGACAHLGGVVGLG 268 Query: 171 P-------------------NPTQATP----------------IDKVITDKPIIK----V 191 NP P + + +T ++ + Sbjct: 269 NLSEPEALLEAAYRAPPSVSNPEAPLPGGPVRADGATLSLPVLLPRTLTLADVVSVDYTI 328 Query: 192 PGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGE---FVQ 248 PGCPP P V+ A + ++ D P + P + + C R+ ++ Sbjct: 329 PGCPPSPAVVQAALDALL-GDAPPPRGAVLAP----DVSLCEDCPRKGSRPERIELHALR 383 Query: 249 SWDDDAARKGYCLYKMG--CKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAEN 300 A C G C GP T C +++G C GC Sbjct: 384 RLATSAVDPELCFLAQGLVCMGPATRQGC--------QPGCVEAGMPCRGCFGP 429 >UniRef50_Q1NJF2 NADH ubiquinone oxidoreductase, 20 kDa subunit n=3 Tax=delta proteobacterium MLMS-1 RepID=Q1NJF2_9DELT Length = 366 Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats. Identities = 50/339 (14%), Positives = 89/339 (26%), Gaps = 113/339 (33%) Query: 51 RIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIIT 110 + + C C + + + + + + L + L+ E + + I Sbjct: 4 KPKLAIYWAAACGGCEIAVVNLHEKILE--LDAAFELFFCPCLLDTKKGDIEALADGEIA 61 Query: 111 QYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAAR 170 + G E E + + +IA+G+CA GC+ Sbjct: 62 ------VTLFNGAIRTSENE-----------EMAQLLRRKSQTLIAFGSCAVEGCIPGLA 104 Query: 171 P-------------------NPTQATP----------------IDKVITDKPIIK----V 191 NP P D+V T ++ + Sbjct: 105 NLYDRTAIFNTVYLDNPSLDNPAGILPQTRSQVPEGELRLPEFYDRVQTLADVVAVDFFI 164 Query: 192 PGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYR-------RAHFDAG 244 PGCPP P + + ++ D P +G + + +C R + + Sbjct: 165 PGCPPEPPRIWQAVESLLNGDPPPPDQVLGAGKLA----VCHECPRKIEEKKIKRFYRNH 220 Query: 245 EFVQS--------------------------------WDDDAARKGYCLYKMG--CKGPT 270 + + D K CL + G C G Sbjct: 221 QMISDHRVPPAALIAAASPTATRTPVREPAPSSQDAVPGDRFPDKESCLLEQGLLCMGIA 280 Query: 271 TYNACSSTRWNDGVSFPIQSGHGCLGCAEN--GFWDRGS 307 T C + Q G C GC G D+G+ Sbjct: 281 TREGCGAL--------CPQVGMPCTGCYGPPAGVEDQGA 311 >UniRef50_Q39QE2 F420-non-reducing hydrogenase subunit G n=5 Tax=Geobacter RepID=Q39QE2_GEOMG Length = 316 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 51/354 (14%), Positives = 97/354 (27%), Gaps = 86/354 (24%) Query: 51 RIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIIT 110 I + W+ +C+ C + + + +L +++ L + Sbjct: 5 PINLEWL--SDCSGCHVAIVDLHEKILA--VLESVTIQRCPVL-------------TDVK 47 Query: 111 QYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAAR 170 Y + V G I IIAWG+CA +G + A Sbjct: 48 DYPKAKLGLVSGAIRTEHDRHAAI-----------EMRKSCDLIIAWGSCAVYGGIAGAG 96 Query: 171 PNPTQATPIDKVITD------------------------KPIIKV----PGCPPIPDVMS 202 ++ ID V +I V PGC P P + Sbjct: 97 NVHSRQEIIDAVYIGNKTTATHAPPTKEVSALEPSVSPLDSVIDVDLYLPGCAPHPAFVF 156 Query: 203 AIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLY 262 + ++ P G+ + +C R+ + ++ + C Sbjct: 157 DALLALLEGRS---------PRTATGESVCARCRRKMEKTEVDRIRKNSEGVPDPDRCFL 207 Query: 263 KMG--CKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAENGFWDRGSF-----------Y 309 G C G T + C +S +G C GCA Sbjct: 208 SQGYLCMGSVTLDRC--------MSPCPLNGIPCSGCAGATMQVLAEPNRDIRTEIAERM 259 Query: 310 SRVVDIPQMGTHSTADTVGLTALGVVAAAVGVHAVASAVDQRRRHNQQPTETEH 363 SR+ +IP+ + T A + + + ++ ++ + Sbjct: 260 SRLTEIPREAIVREIERTSKTHYSYTMATPMIGEKPTFLIKKWTDEERDDYEQD 313 >UniRef50_A0LKF2 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LKF2_SYNFM Length = 300 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 45/274 (16%), Positives = 76/274 (27%), Gaps = 68/274 (24%) Query: 62 CTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVE 121 C C + + L IL IS+ + LM + + + + V Sbjct: 14 CAGCEVAILDQGELLLD--ILERISIVHAPILMDSKYRD--PAGDSDVVSIPRADVGIVS 69 Query: 122 GNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPN--------- 172 G + K +IA G+CA G + + Sbjct: 70 GGIRTEHG-----------LAVAKAVRESCDILIANGSCACMGGIPSLANLVPPDVLKQG 118 Query: 173 -PTQATPIDKVITDKPI---------------IKVPGCPPIPDVMSAIITYMVTFDRLPD 216 P ++ + P I +PGCPP + +A + ++ Sbjct: 119 VPNLEHGVEDGDFELPPLTARVAAINEVVPVDIFLPGCPPPTHLFAAALQAVL------- 171 Query: 217 VDRMGRPLMFYGQRIHDKC-----YRRAHFDAG-EFVQ--SWDDDAARKGYCLYKMG--C 266 GR + ++C R D G +F + + CL + G C Sbjct: 172 ---EGRSFDLPEDTVCNECSKTKEKRTVFADNGLQFPEMLRPLETPPLDKRCLIEQGFFC 228 Query: 267 KGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAEN 300 G T + C + Q C GC Sbjct: 229 MGAATRSGCGAR--------CTQVNMPCRGCMGP 254 >UniRef50_O28898 Methylviologen-reducing hydrogenase, subunit gamma (VhuG) n=1 Tax=Archaeoglobus fulgidus RepID=O28898_ARCFU Length = 293 Score = 136 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 49/335 (14%), Positives = 97/335 (28%), Gaps = 82/335 (24%) Query: 52 IPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQ 111 I V + C+ CT S + + A + + + Sbjct: 2 IDVAFYIAHGCSGCTMSMLDLGER--------------MNDFRMRVAWAAPTLGDGKYDR 47 Query: 112 YNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARP 171 +EG L E +E ++ + ++A+G CAS G + Sbjct: 48 IPEVDYAFIEGGIGLSEH-----------VEIVRELREKSETLVAFGICASCGGIMGLAN 96 Query: 172 NPTQATPIDKVI--------------------TDKPII----KVPGCPPIPDVMSAIITY 207 ++ ++ V ++ + GCPP P+ + Sbjct: 97 LHSKEEILEDVFGSAKSSVGDLRIPEMLEFVKPLDSVVEVDCYIGGCPPTPEQIYNAFKA 156 Query: 208 MVTFDRLPDVDRMGRPLMFYGQRIHDKCYRR---AHFDAGEFVQSWDDDAARKGYCLYKM 264 + + R + G+ + + C R + F++ D + C K Sbjct: 157 IFEGE---------RGWITSGKSVCEFCSRNLSEKFGEVSRFLRVPDKE------CFLKQ 201 Query: 265 G--CKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAE--NGFWDRGSFYSRVVDIPQMGT 320 G C GP T C ++ S C GC D GS +VD+ T Sbjct: 202 GILCFGPATQGDC--------MASCPNSNSPCRGCGGMLPSVDDHGS---ALVDMLSSLT 250 Query: 321 HSTADTVGLTALGVVAAAVGVHAVASAVDQRRRHN 355 ++ + ++ + S+ + + Sbjct: 251 DEKGIEALSMTYTNLSKLLYLYTLPSSTLRGKVRR 285 >UniRef50_C6A155 NiFe hydrogenase I, subunit delta n=1 Tax=Thermococcus sibiricus MM 739 RepID=C6A155_THESM Length = 267 Score = 134 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 47/279 (16%), Positives = 79/279 (28%), Gaps = 84/279 (30%) Query: 42 IAWALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQA 101 + ++ + + C C F D +L L+ A + Sbjct: 1 MTEVRRMSEKVKIGFYALTSCYGCQLQF------AMMDEVLQLLD---------KANIEC 45 Query: 102 EEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCA 161 + E + I +EG+ E+ +E +K+ A +IA G+CA Sbjct: 46 WFMLERGSDEDKEVDIAFIEGSVSTQEE-----------VELVKKIREKAKIVIAVGSCA 94 Query: 162 SWGCVQAARPN-------------------PTQATPIDKVITDKPIIKVPGCPPIPDVMS 202 G VQ+ + P A P++K I K+ GCPP Sbjct: 95 VHGGVQSWDKDKEFNELWKTVYGDAHVKFEPKMAEPVEKYIKVD--YKLYGCPPEKKDFL 152 Query: 203 AIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLY 262 + ++ D+D + +C R L Sbjct: 153 YALGTLLIGSWPEDID----------YPVCVECRLRG-----------------NPCLLI 185 Query: 263 KMG--CKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAE 299 + G C GP T C + C+GC Sbjct: 186 EKGEPCLGPLTVAGCDAR--------CPAFNIACIGCRG 216 >UniRef50_C1DUT4 Putative [NiFe] hydrogenase, delta subunit n=1 Tax=Sulfurihydrogenibium azorense Az-Fu1 RepID=C1DUT4_SULAA Length = 249 Score = 134 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 53/270 (19%), Positives = 79/270 (29%), Gaps = 86/270 (31%) Query: 52 IPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQ 111 + V C C SFI + LA+ L S+DY + + Sbjct: 1 MRVGIFKFSSCDGCQLSFINLSGELAE---LENFSIDYF-------------LEGQSVNN 44 Query: 112 YNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARP 171 Y VEG+ E+ IE++K + ++ G CA G VQ+ R Sbjct: 45 YEYFDFSFVEGSVSTTEE-----------IERIKDIRERSKVLVGIGACAVSGGVQSIRN 93 Query: 172 --NP-----------------TQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFD 212 N A PI +V+ ++ GCP DV+ I ++ Sbjct: 94 FRNIDDIKTVYNTVDITKNVLENALPISQVVKVD--FEIRGCPVSTDVVKDFINSILIGK 151 Query: 213 RLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCL--YKMGCKGPT 270 + Y + +C RR CL C GP Sbjct: 152 SPHN----------YNYPVCLECKRRG------------------NICLLVLNKPCLGPI 183 Query: 271 TYNACSSTRWNDGVSFPIQSGHGCLGCAEN 300 T C++ GC GC Sbjct: 184 TTAGCNAL--------CPSVNRGCYGCFGP 205 >UniRef50_A6UVU9 Coenzyme F420 hydrogenase n=2 Tax=Euryarchaeota RepID=A6UVU9_META3 Length = 227 Score = 131 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 48/258 (18%), Positives = 88/258 (34%), Gaps = 54/258 (20%) Query: 52 IPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQ 111 + V + C C S + L +L I L Y T+ A + Sbjct: 2 VTVAHVQLSSCCGCLVSLTDTYEKLLD--VLGAIDLVYSQTIADA-------------RE 46 Query: 112 YNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCV----- 166 I+ VEG+ L + +E + A ++A G CA+ G + Sbjct: 47 IPEADIILVEGSVCLDDH---------HAMEIAQDVGKKAKILVALGACAATGGITRFCR 97 Query: 167 --QAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPL 224 Q ++P + +PI +V+ + +PGCPP P+++ +IT + D P Sbjct: 98 GGQMSKPIHSSFSPITEVVKCD--LAIPGCPPSPEIIVGLITAAIEGDM-----EYLAPF 150 Query: 225 MFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGV 284 + + + C + ++ + + G GC +C + Sbjct: 151 SEFAKNNTEAC-------GCDVIEKVVNKSLCMGC-----GC----CAASCPTRAIEMVE 194 Query: 285 SFPIQSGHGCLGCAENGF 302 P+ C+ C GF Sbjct: 195 GRPLILNEVCIKCGCCGF 212 >UniRef50_B6YU80 Cytosolic NiFe-hydrogenase, delta subunit n=9 Tax=Thermococcaceae RepID=B6YU80_THEON Length = 265 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 46/271 (16%), Positives = 76/271 (28%), Gaps = 84/271 (30%) Query: 50 PRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDII 109 ++ + + C C F D IL L+ A + + Sbjct: 3 GKVRIGFYALTSCYGCQLRF------AMMDEILQ---------LLPNAEIVCWYMLDRDS 47 Query: 110 TQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAA 169 ++ I +EG+ E+ +E +K+ A ++A G CA+ G VQ+ Sbjct: 48 SEDEPVDIAFIEGSVSTEEE-----------VELVKKIRENAKIVVAVGACATQGGVQSW 96 Query: 170 RPN-------------------PTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVT 210 + P A P++ I I GCPP I + Sbjct: 97 EKDKSLEELWKAVYGDGKVKFEPKMAEPLENYIKVDYRIY--GCPPEKKDFIYAIGTFLV 154 Query: 211 FDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMG--CKG 268 D+D + +C + L + G C G Sbjct: 155 GSWPEDID----------YPVCLECRLKG-----------------NTCILIEKGEPCLG 187 Query: 269 PTTYNACSSTRWNDGVSFPIQSGHGCLGCAE 299 P T C + G C+GC Sbjct: 188 PITRAGCDAR--------CPSYGIACIGCRG 210 >UniRef50_A8UU12 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UU12_9AQUI Length = 252 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 44/270 (16%), Positives = 77/270 (28%), Gaps = 83/270 (30%) Query: 49 KPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDI 108 K ++ V C C F+ + + Y Sbjct: 2 KNKLRVGVFKLSSCDGCQAIFLDLPS------LWEHLDFRYW-------------FLGKS 42 Query: 109 ITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQA 168 + I VEG+ E+ E +K A ++ G CA+ G +QA Sbjct: 43 ENKLEPIDIAFVEGSVSTQEE-----------AEFIKEVREKARLLVTIGACATSGGIQA 91 Query: 169 AR------------PNPT------QATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVT 210 R P P ++TPI + + ++ GCP P ++ + ++ Sbjct: 92 LRNFGSLEEFSSVYPKPEFIKVLKRSTPISEHVKVD--YEIYGCPINPHILENFVKALL- 148 Query: 211 FDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPT 270 R P++ + +C R + + Y++ C GP Sbjct: 149 HSRRPEIPSY---------PLCMECKLRGNICVMDA---------------YRIPCLGPV 184 Query: 271 TYNACSSTRWNDGVSFPIQSGHGCLGCAEN 300 C + G GC GC Sbjct: 185 VRAGCGAL--------CPSVGRGCYGCFGP 206 >UniRef50_C6YT65 Predicted protein n=2 Tax=Francisella philomiragia RepID=C6YT65_9GAMM Length = 268 Score = 127 bits (318), Expect = 8e-28, Method: Composition-based stats. Identities = 48/280 (17%), Positives = 81/280 (28%), Gaps = 84/280 (30%) Query: 44 WALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEE 103 PR + C C + I A L + ++ + + A AG Sbjct: 6 KLKNLAPRPKIAVHKFSSCDGCQLALINDAVSLLT--LAEMVDIVHF----AEAGP---- 55 Query: 104 VFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASW 163 + ++ I +EG+ I +L++ A +IA G CA Sbjct: 56 -----LDEFADVDIAFIEGSVNTHHD-----------IPRLQKIREKAKYVIAIGACAVA 99 Query: 164 GCVQAARPNPTQA----------------TPIDKVITDKPIIK--------VPGCPPIPD 199 G +QA R N T A I + ++ IK + GCP + Sbjct: 100 GGIQALR-NYTNAAELLEWQKAVYPQDTDVIIKEDLSTAKAIKEYVNVDFEISGCPITTE 158 Query: 200 VMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGY 259 + I ++ + + C H + + D+ Sbjct: 159 QILKAIRQLLFGVEP-------------EKVVDPVCTSCKHASVTCVMVAKDEP------ 199 Query: 260 CLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAE 299 C GP T + C + + G GC GC Sbjct: 200 ------CLGPVTADGCGAI--------CPKLGRGCYGCFG 225 >UniRef50_C0QP84 Putative [NiFe] hydrogenase, delta subunit n=1 Tax=Persephonella marina EX-H1 RepID=C0QP84_PERMH Length = 249 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 39/266 (14%), Positives = 72/266 (27%), Gaps = 77/266 (28%) Query: 52 IPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQ 111 I V C C SF + + + + Y + + Sbjct: 2 IEVGIFKFASCDGCQISFFDISE--MLSHLEEKVRIKYF-------------IEGQDRNE 46 Query: 112 YNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAAR- 170 + I +EG+ EQ EK+K+ + ++ G C+S G +Q+ R Sbjct: 47 FERFDISFIEGSVSTPEQE-----------EKVKKIRDVSEYVVTIGACSSSGGIQSVRN 95 Query: 171 ------------PNPTQATPIDKVITDKPIIK----VPGCPPIPDVMSAIITYMVTFDRL 214 P P +++ I + GCP + + +I ++ + Sbjct: 96 FSDYKDIVCSVYPKPEMIKSLERSRPVSDYIDVDFEIRGCPINKEALLEVIYSVILGKKP 155 Query: 215 PDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNA 274 + +C R+ + F + C G T Sbjct: 156 ----------YNPEYPVCMECKRKGNPCVIIFGKP----------------CLGSITSAG 189 Query: 275 CSSTRWNDGVSFPIQSGHGCLGCAEN 300 C + GC GC Sbjct: 190 CGAV--------CPSYNRGCYGCFGP 207 >UniRef50_C7NPL1 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Halorhabdus utahensis DSM 12940 RepID=C7NPL1_HALUD Length = 266 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 47/277 (16%), Positives = 82/277 (29%), Gaps = 89/277 (32%) Query: 46 LENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVF 105 + + + V + C I +D +L L F Sbjct: 1 MTGEDKPRVAFFDFTGCEGDQLQVIN-----LEDRLLDL------------VEVVEVVSF 43 Query: 106 EDIITQYNGKY-ILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWG 164 + +T+++ +Y I VEG +L A ++A G+CA++G Sbjct: 44 REAMTEHSDEYEIAFVEGGVATAHDER-----------RLTDIRDNADVVVALGSCAAFG 92 Query: 165 CVQAARP--------------------NPTQATPIDKVITDKPIIKVPGCPPIPDVMSAI 204 + A R + A PI+ VI + ++PGCP + Sbjct: 93 GINALRNHQDFETVKERVYGEDADSITSYPIARPIEDVIEVE--YEIPGCPIDREEFLGA 150 Query: 205 ITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKM 264 +T +V + +C + C ++ Sbjct: 151 VTALVNGAEP----------SIPNYPVCLEC------------------KFAENTCAFER 182 Query: 265 G--CKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAE 299 G C GP T CS+T + +G C GC Sbjct: 183 GETCLGPITRGGCSAT--------CVSAGTHCWGCRG 211 >UniRef50_Q2LYD8 Nickel-dependent hydrogenase, small chain n=2 Tax=Bacteria RepID=Q2LYD8_SYNAS Length = 253 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 41/271 (15%), Positives = 76/271 (28%), Gaps = 85/271 (31%) Query: 50 PRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDII 109 + V + C C L IL I + +M+ Sbjct: 6 MKPKVAFFDFACCEGCQLQVANLGEALLD--ILGAIDVVEFREVMSEKWD---------- 53 Query: 110 TQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAA 169 + VEG+ +++++ ++ +IA+G+CA+ G V Sbjct: 54 ---KNYDVAIVEGSITDEHAE-----------QRIRKIRDRSAVLIAYGSCATIGGVNGM 99 Query: 170 RPNPT-------------------QATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVT 210 + + + PI +V+ I GCP + ++ + Sbjct: 100 KNSFVLDEIRQSVYGKDYQLFDSKKTRPIHQVVKVDYFIN--GCPVYHPEVIEVLKCALR 157 Query: 211 FDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMG--CKG 268 P + +C + C+Y G C G Sbjct: 158 GV----------PYAVPDNPVCSEC------------------KLNENVCMYDRGVACLG 189 Query: 269 PTTYNACSSTRWNDGVSFPIQSGHGCLGCAE 299 P T C+ S+ I +G+ C GC Sbjct: 190 PWTKAGCN--------SWCINNGNICYGCRG 212 >UniRef50_C5S9B0 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S9B0_CHRVI Length = 251 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 43/271 (15%), Positives = 75/271 (27%), Gaps = 86/271 (31%) Query: 50 PRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDII 109 + V + C C + + + + +L +I + M+ G + Sbjct: 1 MKPKVAFFEFTSCEGCQLTVLDTLQRHPE--LLEVIEIVQFREAMSERGEDYQ------- 51 Query: 110 TQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAA 169 I +EG+ K++ A ++A G CA G + A Sbjct: 52 -------IAFIEGSCTRPSDEA-----------KIREIREQAQIVVALGACAHLGGINAI 93 Query: 170 RP-NPTQ------------------ATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVT 210 R P + A P+ VI +I PGCP + +T+++ Sbjct: 94 RNRMPLEQTREYVYGDKKDWFETYPARPLSAVIEVDAVI--PGCPIDRKEFATAVTHLLQ 151 Query: 211 FDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMG--CKG 268 + + C + C++ G C G Sbjct: 152 GRKP----------AIPDYPLCIDC------------------KLTENVCMFLRGQTCLG 183 Query: 269 PTTYNACSSTRWNDGVSFPIQSGHGCLGCAE 299 P T C + G GC GC Sbjct: 184 PVTRAGCEAI--------CPAQGQGCEGCRG 206 >UniRef50_B1L3Q1 Coenzyme F420-reducing hydrogenase, gamma subunit n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L3Q1_KORCO Length = 258 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 43/272 (15%), Positives = 76/272 (27%), Gaps = 81/272 (29%) Query: 49 KPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDI 108 ++ + C + + +D++L L+SL AE Sbjct: 1 MGKLRAAFYSLTGCQGEYLTIL-----GMEDILLDLLSLV----------DIAEFKLASS 45 Query: 109 ITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQA 168 I VEG+ +E +KR + ++A G CA WG +QA Sbjct: 46 KEYDGKVDIAFVEGSVSTERD-----------LEYIKRIRGNSKILVALGDCAVWGGIQA 94 Query: 169 A----------------RPNPTQATPIDKVITDKPIIK--VPGCPPIPDVMSAIITYMVT 210 + N K I++ + + GCP + ++ +V Sbjct: 95 STSGQDPKELMRSVYKTEKNLYGFLGEHKGISEVVPVDYEIQGCPIEGKEFARVLIDLVR 154 Query: 211 FDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMG--CKG 268 D P++ + +C R + + G C G Sbjct: 155 -DVKPELPDY---------PVCIECKVRE-----------------IPCLIVERGLPCLG 187 Query: 269 PTTYNACSSTRWNDGVSFPIQSGHGCLGCAEN 300 P T C + C+GC Sbjct: 188 PITVAGCDAR--------CPSYNTACIGCRGP 211 >UniRef50_B6YSK0 Sulfhydrogenase II, delta chain n=6 Tax=Thermococcaceae RepID=B6YSK0_THEON Length = 246 Score = 122 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 45/270 (16%), Positives = 80/270 (29%), Gaps = 79/270 (29%) Query: 49 KPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDI 108 ++ + +C C + + + + L+ E Sbjct: 2 MDKLKLAVFELTDCGGCALNIL-----FLYEKLFDLLEFY----------EITEFHMATS 46 Query: 109 ITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQA 168 +++ + + V G + LK A + +IA GTCA+ G VQA Sbjct: 47 LSEGSHYDVALVTGTVSSQRD-----------LALLKEARNHSDYLIALGTCATHGSVQA 95 Query: 169 A---------------RPNPTQATPIDKVITDKPI-IKVPGCPPIPDVMSAIITYMVTFD 212 + NP +A V+ + +PGCP + + ++ + Sbjct: 96 SVEGSIREKLKRVYGDEGNPMRALDSKPVVEYVAVDFALPGCPYDKNEVYQVLMDIAKGI 155 Query: 213 RLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMG--CKGPT 270 D + +C + L K G C GP Sbjct: 156 EPVKKD----------YPVCVECKLNEY-----------------ECVLVKKGLPCLGPI 188 Query: 271 TYNACSSTRWNDGVSFPIQSGHGCLGCAEN 300 TY C++ I+SG GC+GC Sbjct: 189 TYGGCNA--------ACIRSGLGCIGCRGP 210 >UniRef50_Q0W6U0 Coenzyme F420-non-reducing hydrogenase (Methyl viologen-reducing hydrogenase), gamma subunit n=3 Tax=Euryarchaeota RepID=Q0W6U0_UNCMA Length = 306 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 44/279 (15%), Positives = 79/279 (28%), Gaps = 73/279 (26%) Query: 52 IPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQ 111 I + C C S +L+ + + Y LM + + Sbjct: 2 IKLATEPLASCAGCHMS--LLDLHEDLLELLNKVEIVYSPILM-------------DVKE 46 Query: 112 YNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAAR- 170 + + + +E++K+ A +IA+GTCA +G V Sbjct: 47 PPED----------IDIAIIGGAIRNKENMERVKKLRQRAKTVIAFGTCACYGGVSGLSI 96 Query: 171 -----------------------PNPTQATPIDKVITDKPIIK----VPGCPPIPDVMSA 203 PN + + +IK + GCPP + Sbjct: 97 LHSRDEILNGVYTNRQGTTTNVIPNQDIPDLLYRGYAVGDVIKVDYYITGCPP-KEFFLR 155 Query: 204 IITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYK 263 I + R+PD+ + + + +C R ++ + + CL Sbjct: 156 QILLPLIEGRIPDLQK---------KSVCSECDREMVLVKDWKIKRRYEGVPEEKTCLLG 206 Query: 264 MG--CKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAEN 300 G C G T+ C + G C GC Sbjct: 207 QGYICLGSVTFGRCHAL--------CTHHGIPCHGCGGP 237 >UniRef50_Q2J4E9 NADH ubiquinone oxidoreductase, 20 kDa subunit n=29 Tax=Bacteria RepID=Q2J4E9_FRASC Length = 278 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 44/270 (16%), Positives = 73/270 (27%), Gaps = 82/270 (30%) Query: 51 RIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIIT 110 R + C C + + + L A E Sbjct: 17 RPRLAVWKFASCDGCQLTLLDCED----------------ELLSLAGEIDVSYFLEASSA 60 Query: 111 QYNGKYIL-AVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAA 169 +G Y L VEG+ + +E++ + A + ++ G CA+ G +QA Sbjct: 61 TVDGPYDLSLVEGSVTTEQD-----------VERIHQVRAASRRLVTIGACATAGGIQAL 109 Query: 170 RPN----------PTQATPIDKVITDKPI-------IKVPGCPPIPDVMSAIITYMVTFD 212 R + + T PI ++ GCP P + +I+ + Sbjct: 110 RNFADVGDFLAAVYATPAYVSTLATSTPISTHVRVDFELQGCPINPRQLLEVISAFL--- 166 Query: 213 RLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMG--CKGPT 270 RP + +C RR + G C GP Sbjct: 167 ------ARRRPN-ISSSAVCTECKRRGT-----------------VCVMVAHGTPCLGPV 202 Query: 271 TYNACSSTRWNDGVSFPIQSGHGCLGCAEN 300 T+ C + GC GC Sbjct: 203 THAGCGAI--------CPAYHRGCYGCFGP 224 >UniRef50_A0L609 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L609_MAGSM Length = 282 Score = 117 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 44/274 (16%), Positives = 77/274 (28%), Gaps = 85/274 (31%) Query: 50 PRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDII 109 ++ V C + + L + + +MA++ Sbjct: 10 KKLRVGIYSFTGCAGDQLAILNDTTVLLG--LAQRAEI--CSFIMASSQES--------- 56 Query: 110 TQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAA 169 Q + VEG+ ++ L++ + A++A GTCA WG + A Sbjct: 57 DQEGRLDLAIVEGSICSEQERTA-----------LEKLRQRSDALMALGTCAVWGGLPAM 105 Query: 170 R--------------------PNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMV 209 P +A P+ + + V GCP D + ++T ++ Sbjct: 106 NAKTIPIHTMKEQVYGDSTVFPGAREAEPLSRFVKVD--YAVTGCPIEIDEFAQVVTAIL 163 Query: 210 TFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMG---C 266 R D + +C + CL + C Sbjct: 164 NGVRPVQTDA----------SVCSEC------------------RIAENRCLVQAERRVC 195 Query: 267 KGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAEN 300 GP T C + IQ G C GC Sbjct: 196 CGPITLAGCKAR--------CIQYGQPCYGCRGP 221 >UniRef50_D1TP47 Ni Fe-hydrogenase I small subunit-like protein n=1 Tax=Burkholderia sp. CCGE1002 RepID=D1TP47_9BURK Length = 303 Score = 114 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 55/87 (63%), Positives = 68/87 (78%) Query: 241 FDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAEN 300 F G ++WDD+AAR+GYCLYK+GCKGPTTYNACS+ RWN G SFPIQ+GHGC+GC+E Sbjct: 180 FRRGPVRRAWDDEAARRGYCLYKVGCKGPTTYNACSTVRWNRGTSFPIQAGHGCIGCSEE 239 Query: 301 GFWDRGSFYSRVVDIPQMGTHSTADTV 327 GFWD+GS Y R+ I Q G + AD + Sbjct: 240 GFWDKGSIYDRLTRIDQFGVEANADKI 266 >UniRef50_P80491 Coenzyme F420 hydrogenase subunit gamma n=27 Tax=Euryarchaeota RepID=FRHG_METBF Length = 259 Score = 114 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 49/263 (18%), Positives = 88/263 (33%), Gaps = 53/263 (20%) Query: 50 PRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDII 109 +I + +H CT C S + ++ L Y TL + Sbjct: 3 NKIKIGHVHMSGCTGCLVSLAD-NNLGLIKILDDYADLVYCLTL-------------ADV 48 Query: 110 TQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCV--- 166 + VEG+ L + +E +K + ++A G+CA +G + Sbjct: 49 RHIPEMDVALVEGSVCLQDHES---------VEDIKETRKKSKIVVALGSCACYGNITRF 99 Query: 167 ----QAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVM--SAIITYMVTFD---RLPDV 217 Q +P PI +I + +PGCPP P+++ A++ Y++ + Sbjct: 100 SRGGQHNQPQHESYLPIGDLIDVD--VYIPGCPPSPELIRNVAVMAYLLLEGNEEQKELA 157 Query: 218 DRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSS 277 + +PLM +R C+ +D +G C+ GC G +C Sbjct: 158 GKYLKPLMDLAKRGTSGCFCDLMYDV-----------INQGLCM---GC-GT-CAASCPV 201 Query: 278 TRWNDGVSFPIQSGHGCLGCAEN 300 P C+ C Sbjct: 202 HAITLEFGKPQGERDLCIKCGSC 224 >UniRef50_C8WGI4 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WGI4_EGGLE Length = 261 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 39/273 (14%), Positives = 62/273 (22%), Gaps = 81/273 (29%) Query: 46 LENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVF 105 E VV + C C + L +L I L Y + Sbjct: 9 QEKPSAPRVVVVGLASCFGCQLQITNAEAHLLD--VLGQIDLRYWQLASSD--------- 57 Query: 106 EDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGC 165 + +EG E ++ A AIIA G CA+ Sbjct: 58 ----PMPEDFDVAIIEGAVTTEESEA-----------TVRSLREKAGAIIAVGACATTAG 102 Query: 166 VQAARPN-------------PTQATPIDKVITDKPIIK----VPGCPPIPDVMSAIITYM 208 + P+ + +I V CP ++ Sbjct: 103 IPGMAAEGFLERPGQVYDRVPSACGDMVAPRAVGAVIDVDFEVRACPIDSYDFIDVLQRA 162 Query: 209 VTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMG--C 266 + G + + + C R + C + G C Sbjct: 163 L----------YGSNKTYPSRTMCGDCKRN------------------ETSCFFGKGQLC 194 Query: 267 KGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAE 299 G T C + + G C GC Sbjct: 195 LGLVTTAGCGAK--------CVNLGRPCNGCRG 219 >UniRef50_B5EBV9 NADH ubiquinone oxidoreductase 20 kDa subunit n=5 Tax=Geobacter RepID=B5EBV9_GEOBB Length = 251 Score = 111 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 41/275 (14%), Positives = 71/275 (25%), Gaps = 87/275 (31%) Query: 49 KPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDI 108 R + C+ C + + LA+ AA + Sbjct: 1 MNRPRLAIAGLTACSGCQLTLLNCEDELAQV---------------AARFDLVSFPMAES 45 Query: 109 ITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQA 168 + VEG + L R + ++A GTCA +G V A Sbjct: 46 VEGGAPFDAAIVEGAVSTPGD-----------LANLFRLRNSSRLLVALGTCAIFGGVAA 94 Query: 169 ARPNPT--------------------QATPIDKVITDKPIIKVPGCPPIPDVMSAIITYM 208 + P+ ++ + GCPP + A++ + Sbjct: 95 MNNGVSTREELVAAVYGDGEKTVESFAPAPLTNFVSVD--FSITGCPPEKQEVMALLCAL 152 Query: 209 VTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLY---KMG 265 + LP + + +C +R+ CL K Sbjct: 153 LN-GTLPPLATY---------PVCTEC------------------RSRENLCLLLERKEL 184 Query: 266 CKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAEN 300 C GP C++ +G C GC Sbjct: 185 CLGPIIQGGCNAR--------CPATGIVCEGCRGP 211 >UniRef50_A0LLU1 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LLU1_SYNFM Length = 184 Score = 111 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 36/197 (18%), Positives = 58/197 (29%), Gaps = 55/197 (27%) Query: 47 ENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFE 106 ++ + C C S + L ++ L+ + Y Sbjct: 4 TASNKVRLATAWFGGCAGCHMSLLDLDERLID--VVGLVDIVYSPV-------------A 48 Query: 107 DIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCV 166 DI G + VEG E + + +IA+G CA G V Sbjct: 49 DIKVFPEGVDVTLVEGACCNDEN-----------VHLAHEVRERSKIVIAFGDCAVTGNV 97 Query: 167 QAARPN-------------------PTQATP------IDKVITDKPIIKV----PGCPPI 197 + R PT I KV+ +I V PGCPP Sbjct: 98 PSMRNRLDRDQMINSVYFEGPGKPPPTSVLGHFLPTLIPKVLPLHQVIPVDIFLPGCPPD 157 Query: 198 PDVMSAIITYMVTFDRL 214 P+ + A I ++ + + Sbjct: 158 PERIWAAIVALLKGEPV 174 >UniRef50_Q00393 Coenzyme F420 hydrogenase subunit gamma n=3 Tax=Methanococcus RepID=FRHG_METVO Length = 243 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 51/256 (19%), Positives = 85/256 (33%), Gaps = 42/256 (16%) Query: 52 IPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQ 111 + + IH CT C S + L IL + L Y TL E + +I + Sbjct: 2 VKIAHIHMSGCTGCLISLTDTYEKLLD--ILGSVELVYALTLTGEKTEITETDDKILIER 59 Query: 112 --YNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCV--- 166 G I VEG+ L + + L +++A G CA+ G V Sbjct: 60 DIPGGIDIALVEGSVCLDDH--------HSMDDILTTRKNSKKSLVALGACAASGGVTRF 111 Query: 167 ----QAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGR 222 Q ++P+ PI VI + +PGCPP + + ++T + D Sbjct: 112 RRVGQMSQPSHASFVPIGDVIKVD--LALPGCPPSTESIVKLLTAALEGDM-----EYLE 164 Query: 223 PLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWND 282 P + D C + ++ + + G G AC + Sbjct: 165 PFAEIAKYGKDAC-------GCDVIKEVINKSLCMGC--------GT-CAAACQVNAIDM 208 Query: 283 GVSFPIQSGHGCLGCA 298 + P + C+ C Sbjct: 209 VEAKPNINSEFCIKCG 224 >UniRef50_C0GED7 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GED7_9FIRM Length = 254 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 42/268 (15%), Positives = 67/268 (25%), Gaps = 81/268 (30%) Query: 52 IPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQ 111 V C+ C F+ L V + Sbjct: 5 PKVAIFKFASCSGCQLEFLNLEPVLLDL---------------LGLVDLTHFVMARRENK 49 Query: 112 YNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARP 171 I VEG+ E IE+LK+A ++A G CA G +Q+ Sbjct: 50 PGPYDIGFVEGSIVNPED-----------IERLKQARRDCGLLVAIGACACHGGLQSLNN 98 Query: 172 -------------NPTQATPIDKVITDKPI---IKVPGCPPIPDVMSAIITYMVTFDRLP 215 +P + + + D+ + K+ GCP + + + + Sbjct: 99 GTPQREVEARVYEHPAEVSSLKSYPVDEYVDIDAKLSGCPINKNELVEFVKSALLGVTP- 157 Query: 216 DVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCL---YKMGCKGPTTY 272 RP + +C + CL K C GP T Sbjct: 158 ----RIRP-----HCVCVEC------------------KLSENVCLTVSEKTPCMGPVTR 190 Query: 273 NACSSTRWNDGVSFPIQSGHGCLGCAEN 300 C + C GC Sbjct: 191 AGCGAL--------CPARSTACTGCHGP 210 >UniRef50_A3DKH2 NADH-quinone oxidoreductase, B subunit n=5 Tax=cellular organisms RepID=A3DKH2_STAMF Length = 165 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 48/159 (30%), Gaps = 35/159 (22%) Query: 52 IPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQ 111 ++ + C C + + PL YD E + Sbjct: 31 PWLIHFNTGACNGCDIEVLAAITPL------------YDP----------ERFGIKLAPS 68 Query: 112 YNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARP 171 IL V G +++L ++A G CA G V Sbjct: 69 IRHADILVVTGAVTKKAAER---------LKRLYEQMPDPKFVVAVGACAISGGVF--HN 117 Query: 172 NPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVT 210 + + DKVI I VPGCPP P+ + I ++ Sbjct: 118 SYSVLAGTDKVIPVD--IYVPGCPPRPEAILDGIVKLLK 154 >UniRef50_A1SU83 Hydrogen dehydrogenase n=23 Tax=Proteobacteria RepID=A1SU83_PSYIN Length = 433 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 42/200 (21%), Positives = 60/200 (30%), Gaps = 56/200 (28%) Query: 48 NKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFED 107 K ++ + C C SF+ L + +L + L D Sbjct: 254 PKKKLKLATCSLAGCFGCHMSFLDMDERLIE--LLERVELSRSP-------------LND 298 Query: 108 IITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQ 167 I T + +EG E I L+ IIA G+CA G V Sbjct: 299 IKTCAPDCDLGLIEGAVCNTEN-----------IAVLRHFRESCKIIIAVGSCAINGGVP 347 Query: 168 AARPNPTQ-----------------ATPID--------KVITDKPIIKV----PGCPPIP 198 + R N PID KV +IKV PGCPP Sbjct: 348 SLRNNIDVKDCLDEAYLNGIGLVNPKVPIDKELPYLLEKVYPIHEVIKVDYFLPGCPPPA 407 Query: 199 DVMSAIITYMVTFDRLPDVD 218 D I+ ++ P++ Sbjct: 408 DAFWKILNDLLDGKE-PELP 426 >UniRef50_B6YT72 Hydrogenase 4, component I or formate hydrogen lyase, subunit 7 n=3 Tax=cellular organisms RepID=B6YT72_THEON Length = 266 Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 53/182 (29%), Gaps = 44/182 (24%) Query: 46 LENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVF 105 + + V + C C + P AE + Sbjct: 1 MSGLKSVWVFHVDSGSCNGCDIEILDVLTP----------------------YYDAERLG 38 Query: 106 EDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGC 165 ++ L V G PL Q + + + ++A GTCAS G Sbjct: 39 IKLVPSPRHADALLVSG--PLTRQTYYAVKAAYEA------MPPKPRIVVAIGTCASSGG 90 Query: 166 VQAAR---PNPTQATPIDKVITD-----------KPIIKVPGCPPIPDVMSAIITYMVTF 211 + NP D++ T KP + +PGCPP P+ + + ++ Sbjct: 91 IFYNGYPIYNPNPERGSDRLRTGGIEVLLAEYGKKPDMYIPGCPPSPEEILYGLAQLLGL 150 Query: 212 DR 213 Sbjct: 151 KE 152 >UniRef50_UPI0001C420D3 coenzyme F420 hydrogenase gamma subunit FrhG n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C420D3 Length = 319 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 42/264 (15%), Positives = 88/264 (33%), Gaps = 54/264 (20%) Query: 44 WALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEE 103 + + + +IH CT S + + ++ ++ + Y TL+ Sbjct: 83 EVEKVADKPKIGYIHMSGCTGDGMSLTENYD-ILSTLLTDMVDIVYGTTLV--------- 132 Query: 104 VFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASW 163 + + + VEG+ L + +++L A + A+G+CA Sbjct: 133 ----DLWEMPEMDLALVEGSVCLQD---------EHSVKELMEVREKAGLVCAFGSCAMT 179 Query: 164 GCV-------QAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPD 216 GC Q A+P PI ++ +PGCP P++++ ++ ++ D Sbjct: 180 GCFTRYARGGQLAQPKHESFVPISDLVKVDC--AIPGCPASPEIIAKVVVALING----D 233 Query: 217 VDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACS 276 +D + L + C + + ++ C GC G C Sbjct: 234 MDYLQPMLDMAACNLACGCDLQ------------TNVVSKALCC----GC-GTCVLA-CP 275 Query: 277 STRWNDGVSFPIQSGHGCLGCAEN 300 + P + + C+ C Sbjct: 276 TRALEMVEGRPSHNKNRCIKCGAC 299 >UniRef50_C7NUN9 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Halorhabdus utahensis DSM 12940 RepID=C7NUN9_HALUD Length = 183 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 46/164 (28%), Gaps = 35/164 (21%) Query: 46 LENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVF 105 ++ ++ C C + + P E Sbjct: 7 WARNRSPWILHMNCGSCNGCDIETLDALMPR----------------------YDVERFG 44 Query: 106 EDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGC 165 +L G P +E++ +IA G+CA+ G Sbjct: 45 IQQKDTPRHADVLVATGPVTKQMA---------PRLERIYEQMPEPKLVIAAGSCAATGG 95 Query: 166 VQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMV 209 V N + ID VI + VPGCP P+ + I ++ Sbjct: 96 VFQDCYNCHE--GIDDVIPVD--MYVPGCPISPETLIDGIVALL 135 >UniRef50_B2A054 NADH ubiquinone oxidoreductase 20 kDa subunit n=54 Tax=cellular organisms RepID=B2A054_OPITP Length = 338 Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats. Identities = 26/165 (15%), Positives = 44/165 (26%), Gaps = 35/165 (21%) Query: 46 LENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVF 105 L + ++ C C + PL L +I+ Sbjct: 2 LGLRKSPWIIHYDASSCNGCDIETLACLTPLYDVERLGVIN------------------- 42 Query: 106 EDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGC 165 I V G + I + ++A G CAS G Sbjct: 43 ---TGNPKHADIFLVTGAVNEQS---------KEVIRNIYHQLPEPKVVVAIGVCASSGG 90 Query: 166 VQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVT 210 + N +D+VI + VPGC P+ + + + Sbjct: 91 IFRDCYNIAG--GVDRVIPVD--VYVPGCAARPEAIIDGVVQALG 131 >UniRef50_A7GWN3 HsdS n=9 Tax=Proteobacteria RepID=A7GWN3_CAMC5 Length = 274 Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 50/179 (27%), Gaps = 35/179 (19%) Query: 32 LGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDD 91 + + K+ K V I C C + P +D Sbjct: 10 IKTANDLTAKLEHLKNIKRSFSVYRIDCGSCNGCEIEIFAAITP------------MWDP 57 Query: 92 TLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGA 151 E ++ IL G + + + AA Sbjct: 58 ----------ERFGFKLVANPRHADILICSGPVTRQM--YYPLL-------RAYEAAPDP 98 Query: 152 SAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVT 210 ++A+G C S G + + IDK+I + +PGCPP P + + + Sbjct: 99 KIVVAFGACGSSGGIFHDAYSVWG--GIDKIIPVD--VYIPGCPPHPASVIYGLGMALG 153 >UniRef50_Q2KJQ3 HoxY n=4 Tax=Proteobacteria RepID=Q2KJQ3_CHRVI Length = 180 Score = 104 bits (258), Expect = 7e-21, Method: Composition-based stats. Identities = 36/204 (17%), Positives = 71/204 (34%), Gaps = 54/204 (26%) Query: 46 LENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVF 105 + +P+I V C+ C SF+ L + ++ + + Y + Sbjct: 1 MSTQPKITVATAWLDGCSGCHMSFLDLDERLIE--LVEHVEIVYSPLV------------ 46 Query: 106 EDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGC 165 D + +EG+ + +EK + + +++ G CA G Sbjct: 47 -DTKELPARVDVGILEGSISSEDD-----------LEKARLFRERCTRLVSLGDCAVTGN 94 Query: 166 VQAARPN--------------------------PTQATPIDKVITDKPI-IKVPGCPPIP 198 V A R + P TP+ V + + + VPGCPP Sbjct: 95 VPAMRNHFKLADVFDRAYRENVTLQPQIPTRRVPALLTPVKPVHGEVKVDVFVPGCPPSA 154 Query: 199 DVMSAIITYMVTFDRLPDVDRMGR 222 D + +++ ++ R+PD + + R Sbjct: 155 DAIWHVLSELIA-GRMPDPNAVTR 177 >UniRef50_B5YB68 NAD-reducing hydrogenase HoxS delta subunit n=2 Tax=Dictyoglomus RepID=B5YB68_DICT6 Length = 180 Score = 104 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 34/199 (17%), Positives = 61/199 (30%), Gaps = 55/199 (27%) Query: 49 KPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDI 108 +I V + C+ C SF+ ++I + ++ D+ Sbjct: 1 MGKIKVASVWCEGCSGCHMSFLDMDE-RLVELINKGLEINATP-------------ITDL 46 Query: 109 ITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQA 168 G I +EG E++K I+A G CA +G + Sbjct: 47 KIPDEGTDIGIIEGAVATDHHE-----------EEVKMMRERCKIIVALGDCAVFGGIPT 95 Query: 169 ARP-------------------------NPTQATPIDKVITDKPIIK----VPGCPPIPD 199 R +P + K +IK VPGCPP D Sbjct: 96 MRNYIPREELLERGYITTESTVDGKIPTSPEIGKHLPKTKAVNEVIKVDLYVPGCPPSAD 155 Query: 200 VMSAIITYMVTFDRLPDVD 218 + ++ ++ R+P ++ Sbjct: 156 AIYYVLKEVLE-GRIPKLE 173 >UniRef50_P22319 NAD-reducing hydrogenase hoxS subunit delta n=6 Tax=Bacteria RepID=HOXY_RALEH Length = 209 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 44/219 (20%), Positives = 61/219 (27%), Gaps = 58/219 (26%) Query: 36 AGMAPKIAWALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMA 95 A A + +I V I C CT SF+ L +L ++L Sbjct: 15 PATPMDPALAANREGKIKVATIGLCGCWGCTLSFLDMDERLLP--LLEKVTLLR------ 66 Query: 96 AAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAII 155 DI I VEG E IE L+ +I Sbjct: 67 -------SSLTDIKRIPERCAIGFVEGGVSSEEN-----------IETLEHFRENCDILI 108 Query: 156 AWGTCASWGCVQAAR--------------PNPTQATPIDKVITDKPIIK----------- 190 + G CA WG V A R + T V+ P I Sbjct: 109 SVGACAVWGGVPAMRNVFELKDCLAEAYVNSATAVPGAKAVVPFHPDIPRITTKVYPCHE 168 Query: 191 -------VPGCPPIPDVMSAIITYMVTFDRLPDVDRMGR 222 +PGCPP D + ++ +V + R Sbjct: 169 VVKMDYFIPGCPPDGDAIFKVLDDLVNGRPFDLPSSINR 207 >UniRef50_A9KS72 NADH ubiquinone oxidoreductase 20 kDa subunit n=3 Tax=cellular organisms RepID=A9KS72_CLOPH Length = 144 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 49/158 (31%), Gaps = 35/158 (22%) Query: 49 KPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDI 108 K ++ G C C + PL +I+ Sbjct: 5 KKSPWIIHYDGSSCNGCDIEVLACLTPLYDVERFGIIN---------------------- 42 Query: 109 ITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQA 168 IL + G+ P ++++ A ++A G CA+ G + A Sbjct: 43 TGNPKHADILLITGSVNEQN---------IPVVKQIYEQMAEPKIVVAVGICANSGGIFA 93 Query: 169 ARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIIT 206 N + +DKV+ + VPGC P+ + + Sbjct: 94 ECYNVSG--GVDKVLPVD--VYVPGCAARPEAIIDGVV 127 >UniRef50_B8G3U7 NADH ubiquinone oxidoreductase 20 kDa subunit n=6 Tax=Bacteria RepID=B8G3U7_CHLAD Length = 177 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 38/200 (19%), Positives = 65/200 (32%), Gaps = 57/200 (28%) Query: 49 KPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDI 108 RI + I C+ C S + L + + + L Y D+ Sbjct: 1 MSRIRIATIWLGGCSGCHMSLLDLDEWLIE--LAAQADLVYSP-------------IADV 45 Query: 109 ITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQA 168 + + +EG E +E A + I+++G CA G V A Sbjct: 46 KRFPSHVDVTLIEGAIANNEH-----------LELAHIARRNSKIIVSFGDCAVSGNVTA 94 Query: 169 ARP-----------------NPTQATP---------IDKVITDKPII----KVPGCPPIP 198 R +P P +DKV+ +I + GCPP Sbjct: 95 LRNPLGSPEQLLQQVYIEHSDPRGKIPHEPGIVPVLLDKVMPVHQVIPVDYYLSGCPPSA 154 Query: 199 DVMSAIITYMVTFDRLPDVD 218 + A++ ++T + P+VD Sbjct: 155 PRIRALLEALLTGRK-PEVD 173 >UniRef50_A5UM99 Coenzyme F420-reducing hydrogenase, gamma subunit, FrhG n=3 Tax=Methanobacteriaceae RepID=A5UM99_METS3 Length = 276 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 49/281 (17%), Positives = 90/281 (32%), Gaps = 65/281 (23%) Query: 35 GAGMAPKIAWALENK-----PRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDY 89 + A E K + + +IH CT S + + V+ ++ + Y Sbjct: 26 APEVEETAAPVAETKQETATNKPRIGYIHLSGCTGDGMSLTENYD-ILDVVLTEMVDIVY 84 Query: 90 DDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAA 149 TL+ + + + +EG+ L ++ E L A Sbjct: 85 GQTLV-------------DLWEMPEMDLCLIEGSVCLQDE--------HSVHELL-EARE 122 Query: 150 GASAIIAWGTCASWGCV-------QAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMS 202 ++ I A+G+CA GC Q A+P PI ++ + +PGCP P++++ Sbjct: 123 KSALICAFGSCALNGCFTTYARGGQQAQPKHESFLPISSLVKVD--VALPGCPVAPEMIA 180 Query: 203 AIITYMVTFDR---LPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGY 259 + + D P +D C ++ R+G Sbjct: 181 KTVVALCNGDMEYLQPALD-------LAACSNACGC-------------DLLNNIIRQGL 220 Query: 260 CLYKMGCKGPTTYNACSSTRWNDGVSFPIQSGHGCLGCAEN 300 C GC G C + + P + C+ C Sbjct: 221 C---SGC-GSCALA-CQTRAIDMVEGRPTINTDRCIKCGSC 256 >UniRef50_B5IEA4 NADH ubiquinone oxidoreductase, 20 Kd subunit family n=2 Tax=Aciduliprofundum boonei T469 RepID=B5IEA4_9EURY Length = 248 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 43/266 (16%), Positives = 77/266 (28%), Gaps = 80/266 (30%) Query: 52 IPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQ 111 + + C C+ F+ + + + ++ G + ++I Sbjct: 1 MNIGIFSLSCCEGCSVQFLNLENEILE--------------ILKYMGINNFRLAKEINEW 46 Query: 112 YNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARP 171 I VEG P ++ + KL + + ++A GTCA+ G V A Sbjct: 47 PVE--IAFVEGTPTNRDEII-----------KLLKIRKYSKILVALGTCAATGGVPAIVN 93 Query: 172 NPTQATPIDKVITDKPIIKVP---------------GCPPIPDVMSAIITYMVTFDRLPD 216 + + P I + GCP + + +IT ++ Sbjct: 94 TLEKKEAMKIYNGVPPKIPIDAKQLKYYVDVDYILYGCPFSKEELKELITSVLLGKGF-- 151 Query: 217 VDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMG--CKGPTTYNA 274 R R + +C R+ CL + G C GP T Sbjct: 152 --RNKR------YSVCVECT------------------LRENGCLLEEGYLCMGPVTRAG 185 Query: 275 CSSTRWNDGVSFPIQSGHGCLGCAEN 300 C + + CLGC Sbjct: 186 CKAI--------CPSNNTQCLGCRGP 203 >UniRef50_Q0W6T1 [NiFe]-hydrogenase, small subunit (EchC-like) n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W6T1_UNCMA Length = 135 Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 54/162 (33%), Gaps = 33/162 (20%) Query: 49 KPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDI 108 K V H C C + S P E + + Sbjct: 5 KRSPWVYHAHAGGCVGCDIELVASMGPR----------------------YDLERLGVRL 42 Query: 109 ITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQA 168 + +L V G PL +PF+E++ +IA G C V Sbjct: 43 VPSPRYADVLLVTGPVPLH---------TKPFLERVYAQTPEPKRVIAIGACGCSCGVFI 93 Query: 169 ARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVT 210 N + A P+DK+I +K+PGCPP P+ + I ++ Sbjct: 94 DDENYSIAGPVDKIIPVD--VKIPGCPPKPEAIMEGIIKVLR 133 >UniRef50_B6YTV9 Coenzyme F420 hydrogenase gamma subunit n=1 Tax=Thermococcus onnurineus NA1 RepID=B6YTV9_THEON Length = 225 Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 64/172 (37%), Gaps = 36/172 (20%) Query: 49 KPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDI 108 ++ V+ + C C S IR+ +P D+I IS Sbjct: 1 MEKLKVLHVDVGGCEGCNVSIIRA-YPKLMDLIELDIS-----------------YLRKD 42 Query: 109 ITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCV-- 166 + + + + G + E +E+LK A ++A+G+CA++ + Sbjct: 43 ECKLDEYDVAIITGGACMNEPR---------ILEELKEIREKAHTVVAFGSCATFSGILR 93 Query: 167 -----QAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDR 213 Q RP+ PI+ VI +PGCPP P ++ + + + D Sbjct: 94 FCRGGQEPRPDHRNFQPINSVIKVD--YSIPGCPPTPQMLQSFFKFYINGDE 143 >UniRef50_C5A2R7 Coenzyme F420 hydrogenase subunit gamma (FrhG) n=1 Tax=Thermococcus gammatolerans EJ3 RepID=C5A2R7_THEGJ Length = 229 Score = 99.4 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 64/175 (36%), Gaps = 36/175 (20%) Query: 46 LENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVF 105 + ++ V+ + C C S IR+ L ++ L + Sbjct: 1 MMLMEKLKVLHVDFAGCEGCNVSIIRAYPKLMNEIDLDI------------------SYL 42 Query: 106 EDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGC 165 D QY + + G + E +E+LK A ++A+G+CAS G Sbjct: 43 RDGSCQYGEYDVALITGGACMNEPR---------ILEELKEIREKARVVVAFGSCASLGG 93 Query: 166 V-------QAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDR 213 + Q RP+ PI+ VI +PGCPP P ++ + + + + Sbjct: 94 ILRFARGGQEPRPDHRNFQPINSVIPVD--YSIPGCPPTPQMLQSFFKFFMAGNE 146 >UniRef50_Q3M430 NADH ubiquinone oxidoreductase, 20 kDa subunit n=46 Tax=Bacteria RepID=Q3M430_ANAVT Length = 181 Score = 98.6 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 36/196 (18%), Positives = 59/196 (30%), Gaps = 56/196 (28%) Query: 49 KPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDI 108 R+ + + C+ C SF+ L +AA F DI Sbjct: 1 MSRLKLATVWLGGCSGCHMSFLDLDEWLID---------------LAAQADVVFSPFADI 45 Query: 109 ITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQA 168 G ++ VEG E + +K + +I++G CA G V A Sbjct: 46 KEYPEGVDVVLVEGAIANEEH-----------LTTIKIVRERSQILISFGDCAVTGNVTA 94 Query: 169 ARPNPTQATPIDK-----------------------------VITDKPI-IKVPGCPPIP 198 R A P+ + V + P+ I +PGCPP Sbjct: 95 LRNPLGSAEPVLQRCYIQAVDINPQIPQEPGIVPPLLDRVTPVHSIVPVDIYLPGCPPSA 154 Query: 199 DVMSAIITYMVTFDRL 214 + A + ++ Sbjct: 155 TRIRAALEPLLQGKTP 170 >UniRef50_Q21RP8 NADH ubiquinone oxidoreductase, 20 kDa subunit n=4 Tax=Proteobacteria RepID=Q21RP8_RHOFD Length = 188 Score = 98.3 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 35/204 (17%), Positives = 61/204 (29%), Gaps = 58/204 (28%) Query: 42 IAWALE-NKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQ 100 +A A+ ++ V + C C SF+ L ++ I D Sbjct: 2 MAPAMSPTPRKLKVATVSLAGCFGCHMSFLDIDERLFD--LIEHIEFDRSPL-------- 51 Query: 101 AEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTC 160 I Q I +EG E ++ L+ A ++A G C Sbjct: 52 ------TDIKQVGACDIGLIEGGLCNAEN-----------VQVLREFRAHCKTLVAVGAC 94 Query: 161 ASWGCVQAARP------------------NPTQATP--------IDKVITDKPII----K 190 A G + A R + A P ++KV + ++ Sbjct: 95 AITGGLPAQRNHLDLGQLLTEVYRSRPGLSAGGAIPNDPELPLLLNKVHPIREVVHVDYS 154 Query: 191 VPGCPPIPDVMSAIITYMVTFDRL 214 +PGCPP D ++ ++ Sbjct: 155 LPGCPPSADAFWHFLSDLMAGRTP 178 >UniRef50_Q59113 Hydrogenase small beta subunit n=2 Tax=Bacteria RepID=Q59113_9BACT Length = 179 Score = 98.3 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 28/196 (14%), Positives = 50/196 (25%), Gaps = 57/196 (29%) Query: 49 KPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDI 108 + V C C SF+ L + + + + + A Sbjct: 1 MAKAKVATFWLEACAGCHMSFLDLDERLID--LFQNVEILFSPIVDA------------- 45 Query: 109 ITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQA 168 + + G +E K+ ++AWG CA +G + Sbjct: 46 -KDIPNIDVGVLSGG-----------LGNVEEVELAKKMRERCKYLVAWGDCAVFGGINC 93 Query: 169 ARP-------------------NPTQATPIDKVITDKPI-----------IKVPGCPPIP 198 R NP P + + P + VPGCPP Sbjct: 94 MRNFIPKDVVLREGYIETASTVNPQGIVPSEDIPELLPRALPIDYEVKVDVYVPGCPPDA 153 Query: 199 DVMSAIITYMVTFDRL 214 D + + ++ Sbjct: 154 DTIYYVFKELLAGRVP 169 >UniRef50_B6YU96 Membrane bound hydrogenase, NiFe-hydrogenase small subunit n=13 Tax=cellular organisms RepID=B6YU96_THEON Length = 175 Score = 98.3 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 55/186 (29%), Gaps = 42/186 (22%) Query: 38 MAPKIAWALENKPR-IPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAA 96 + +IA R V ++ C C I + P Sbjct: 22 LEKRIAQLCRFIGRSPWVFHVNSGSCNGCDIEIIAALTPR-------------------- 61 Query: 97 AGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIA 156 AE ++ +L V G ++ + +IA Sbjct: 62 --YDAERFGVKLVGSPRHADVLLVTGPVTDQSLER---------VKLVYEQTPDPKIVIA 110 Query: 157 WGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMV------T 210 G+C + G V P T A P+ +I + VPGCPP P+ + + + Sbjct: 111 VGSCPTGGSVFYESP-FTNA-PLSNIIPVD--VYVPGCPPRPEAILYGVVLALEKLAKIL 166 Query: 211 FDRLPD 216 +P+ Sbjct: 167 KGEVPE 172 >UniRef50_B3TC56 Putative NADH ubiquinone oxidoreductase, 20 Kd subunit n=1 Tax=uncultured marine microorganism HF4000_APKG10H11 RepID=B3TC56_9ZZZZ Length = 182 Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats. Identities = 39/184 (21%), Positives = 58/184 (31%), Gaps = 36/184 (19%) Query: 42 IAWALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQA 101 + L R +W+ L CC+ F A AG Sbjct: 33 LVKKLITWGRKNSLWVVHLTTGCCSPEFAAL----------------------AGAGYDM 70 Query: 102 EEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCA 161 E ++ IL +EG +++ +IA G CA Sbjct: 71 ERFGPLVMAAMRQCDILIIEGQVADKMAE---------VVKRTYDQMPDPKYVIAVGNCA 121 Query: 162 SWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMG 221 G + + IDK+I + VPGCPP P+ I + T +DR Sbjct: 122 ISGGFYW--DSYSMVMGIDKIIPVD--VYVPGCPPRPEDWIDAIRLVQTRMDKEGLDRE- 176 Query: 222 RPLM 225 RPL+ Sbjct: 177 RPLL 180 >UniRef50_B6YTX0 Hydrogenase 4, component I or formate hydrogen lyase, subunit 7 n=1 Tax=Thermococcus onnurineus NA1 RepID=B6YTX0_THEON Length = 273 Score = 96.7 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 56/192 (29%), Gaps = 54/192 (28%) Query: 46 LENKPRIPVVW---IHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAE 102 + KP++ +W ++ C C I P E Sbjct: 1 MSGKPKLRSIWVFHLNTGSCNGCDIEIIDVLTPF----------------------YDVE 38 Query: 103 EVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCAS 162 ++ + L V G PL Q + E +K I+A GTC Sbjct: 39 RFGIKLVGSPRHAHALLVSG--PLTRQAYYG------AKETIKAMPPEPRVIVAIGTCTC 90 Query: 163 WGCVQAARP-------------NPTQATPIDKVITDK--------PIIKVPGCPPIPDVM 201 G + + I ++I D P+I +PGCPP P+ + Sbjct: 91 SGGIFYNGYPVYRRPESGREGSEYPRRGGIAELIADLRDEGEKVGPVIYIPGCPPRPEEI 150 Query: 202 SAIITYMVTFDR 213 I +V Sbjct: 151 IYGIAQLVGLVE 162 >UniRef50_B8ERX2 Hydrogen dehydrogenase n=1 Tax=Methylocella silvestris BL2 RepID=B8ERX2_METSB Length = 190 Score = 96.3 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 57/197 (28%), Gaps = 56/197 (28%) Query: 48 NKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFED 107 + + C C S + + + ++ L+ LD F+D Sbjct: 10 ASAKPRLATCSLTGCFGCHMSLLDIDERILE--LIDLVDLDVSP-------------FDD 54 Query: 108 IITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQ 167 + + VEG +++L +++ G CA G V Sbjct: 55 KKSFDRPVDVGFVEGGCSNEYN-----------VKELIEFRKHCRILVSVGACAINGGVP 103 Query: 168 AARPNP------------------TQATP--------IDKVITDKPIIKV----PGCPPI 197 A R P +D+V ++K+ PGCPP Sbjct: 104 AMRNTVGLRECLEAVYLHGVSLEGGGMIPNDEDLPLLLDRVYPSHEVVKIDYFLPGCPPS 163 Query: 198 PDVMSAIITYMVTFDRL 214 D + A + ++T Sbjct: 164 GDAIWAALKALLTGTEP 180 >UniRef50_C5U7Y6 NADH ubiquinone oxidoreductase 20 kDa subunit n=2 Tax=Euryarchaeota RepID=C5U7Y6_9EURY Length = 154 Score = 90.9 bits (224), Expect = 6e-17, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 51/172 (29%), Gaps = 39/172 (22%) Query: 44 WALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEE 103 + K I V+ ++ C C ++ + AE+ Sbjct: 10 KKISRKKCIHVMLVYTGGCNGCDI---------------EAVNAVFSP------YYDAEQ 48 Query: 104 VFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASW 163 + IL V G + + K+ A++A G+CA Sbjct: 49 YNVFLTFNPRETDILIVSGCV---------TKFVKESLRKIYEKIPEPKAVVAIGSCALT 99 Query: 164 GCVQAARPNPTQATPIDKVITDK-----PI-IKVPGCPPIPDVMSAIITYMV 209 G V N + P+ +KVPGC P P+ + + I + Sbjct: 100 GGV---YKNIGGDLGTSDFVAGPVENIIPVDVKVPGCAPRPEDIISGIVKAI 148 >UniRef50_Q57936 Uncharacterized protein MJ0516 n=21 Tax=Euryarchaeota RepID=Y516_METJA Length = 148 Score = 90.6 bits (223), Expect = 8e-17, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 45/161 (27%), Gaps = 36/161 (22%) Query: 48 NKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFED 107 K I V ++ C C + P E+ Sbjct: 7 RKRSIHVCVVNTGGCNGCDIEIVACLAPR----------------------YDIEQYGIY 44 Query: 108 IITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQ 167 + +L V G L ++++ ++A G CA G + Sbjct: 45 VHNNPREADVLLVTGPVTLQWAER---------LKEIYEKTPEPKIVVAVGACALSGGIF 95 Query: 168 AARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYM 208 +DKVI K+PGCPP P + I + Sbjct: 96 KEG---HVVGGVDKVIPVDA--KIPGCPPRPSEIIETILKV 131 >UniRef50_B5YKI3 NADH-quinone oxidoreductase subunit B 1 n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=NUOB1_THEYD Length = 199 Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 29/202 (14%), Positives = 60/202 (29%), Gaps = 39/202 (19%) Query: 44 WALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEE 103 + + R +W CC + + AA+ + Sbjct: 32 DKIASWGRCSSLWPLTFGLACCAIEMMAT----------------------AASHYDLDR 69 Query: 104 VFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASW 163 + ++ + G P I L +IA G+CA Sbjct: 70 FGIIMRATPRQADVMIIAGTVTKKMA---------PVIVNLYHQMPEPRYVIAMGSCACS 120 Query: 164 GCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRP 223 G + + +D+++ + +PGCPP P+ + + + + + G Sbjct: 121 GGIF---NTYSTVQGVDEILPVD--VYIPGCPPRPEALIEGLLKLQEKIKTEPHKKTG-- 173 Query: 224 LMFYGQRIHDKCYRRAHFDAGE 245 G + DK RR +++ Sbjct: 174 -CLSGVCLIDKSQRRCSYESCR 194 >UniRef50_C7MLM8 Ni,Fe-hydrogenase III small subunit n=20 Tax=Bacteria RepID=C7MLM8_CRYCD Length = 283 Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 45/181 (24%), Gaps = 40/181 (22%) Query: 35 GAGMAPKIAWALEN-----KPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDY 89 + KIA A K + + + C C + P+ Sbjct: 37 PKVLDQKIAEAKAALLNDIKRSVYIYRVDCGGCNGCEIEIFGTLTPVFD----------- 85 Query: 90 DDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAA 149 AE + IL G + + AA Sbjct: 86 -----------AERFGIKNMASPRHADILVYTGAVTRAMRLPAL---------RAYEAAP 125 Query: 150 GASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMV 209 I+++G C G + N DK+ + +PGCPP P + Sbjct: 126 DPKLIVSYGACGCTGGIF--HDNYCVWGGTDKLFPVD--VYIPGCPPSPAQTIYGFAMAL 181 Query: 210 T 210 Sbjct: 182 G 182 >UniRef50_D1Z1F3 Coenzyme F420 hydrogenase subunit gamma n=1 Tax=Methanocella paludicola SANAE RepID=D1Z1F3_METPS Length = 235 Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 50/262 (19%), Positives = 84/262 (32%), Gaps = 61/262 (23%) Query: 49 KPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDI 108 + ++H C+ C SF+ + L ++ ++ ++Y + Sbjct: 1 MSKPKFAYVHLAACSGCEISFLDNFERLLD--MMDMVDIEYMTLI-------------KD 45 Query: 109 ITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASW----- 163 T I+ V+G L +E LK+A A+ ++AWG C+S Sbjct: 46 ATDIPKVDIVFVDGAACLQS---------EDAVETLKKARENATYLVAWGGCSSTATINN 96 Query: 164 ---GCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRM 220 G Q +P PI +++ VPG PP P + +I V D+D + Sbjct: 97 FSRGG-QLPQPQHESFPPIKRLVKVDA--SVPGSPPGPGMAYNVIRAFVEG----DLDYL 149 Query: 221 GRPLMFYGQRIHDKCYRRAHFDAGEFVQSWD--DDAARKGYCLYKMGCKGPTTYNACSST 278 + + G F D D G C +GC AC + Sbjct: 150 ---------------KYLSSYSLGGFACGCDLWKDIVDNGLC---IGCG--ACAMACPTR 189 Query: 279 RWNDGVSFPIQSGHGCLGCAEN 300 P C+ C Sbjct: 190 AITMVEGRPNNVFERCVKCGAC 211 >UniRef50_B8J1E3 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8J1E3_DESDA Length = 185 Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 42/166 (25%), Gaps = 35/166 (21%) Query: 45 ALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEV 104 +V C C + P+ +++ Sbjct: 9 KRSRLKSPWIVHFDCGSCNGCDIEVLACLTPMYDVERFGVVN------------------ 50 Query: 105 FEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWG 164 +L V G R ++++ A+I+ G C G Sbjct: 51 ----AGNPKHADVLLVTGTVNHRN---------RHVLKQIYEQMPSPKAVISLGACNLSG 97 Query: 165 CVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVT 210 V N VI + VPGCPP P+ + + + Sbjct: 98 GVFKDTYNVLN--GAHNVIPVD--VFVPGCPPKPEAIIDGVVEALG 139 >UniRef50_A3THJ2 NADH dehydrogenase beta subunit n=2 Tax=Bacteria RepID=A3THJ2_9MICO Length = 198 Score = 89.4 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 49/181 (27%), Gaps = 35/181 (19%) Query: 28 AATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISL 87 L AG ++ R +W CC + P + Sbjct: 1 MGLEEKLPAGFVLTTLESVAGYMRKASIWPATFGLACCAIEMMAVGTPDYDIARFGM--- 57 Query: 88 DYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRA 147 E ++ V G P + ++ Sbjct: 58 ------------------ERFSATPRQADLMIVAGRVSNKMA---------PVVRQVYDQ 90 Query: 148 AAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITY 207 +I+ G CAS G + N +D +I I +PGCPP P+++ I Sbjct: 91 MPNPKWVISMGVCASSGGMF---NNYAIVQGVDHIIPVD--IYLPGCPPRPEMLLNAIIE 145 Query: 208 M 208 + Sbjct: 146 L 146 >UniRef50_A9A345 NADH-quinone oxidoreductase, B subunit n=1 Tax=Nitrosopumilus maritimus SCM1 RepID=A9A345_NITMS Length = 174 Score = 89.0 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 47/156 (30%), Gaps = 34/156 (21%) Query: 48 NKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFED 107 N RI +W +E CC+ F ++ P +I Sbjct: 35 NWGRIWSLWPVHIETACCSVEFGAASSPRYDVERFGIIE--------------------- 73 Query: 108 IITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQ 167 ++ V+G P + + +IA G CA G + Sbjct: 74 AFGSLRQCDLVVVQGTITRKMA---------PRLRLVYDQMPEPKYVIAMGACAITGGLY 124 Query: 168 AARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSA 203 N ID VI + VPGCPP P+ + Sbjct: 125 FDSYNV--LPGIDGVIPVD--VYVPGCPPRPETLIQ 156 >UniRef50_Q24ST9 Formate hydrogenlyase subunit 7 n=2 Tax=Desulfitobacterium hafniense RepID=Q24ST9_DESHY Length = 155 Score = 88.6 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 45/170 (26%), Gaps = 43/170 (25%) Query: 43 AWALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAE 102 A + + + C C +P+ + Sbjct: 24 AHLRSLRQSWHIRHLDCGSCNGCDWEMSALLNPI----------------------YDLQ 61 Query: 103 EVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCAS 162 D + IL G + IIA G CA Sbjct: 62 RFGLDFVASPRHADILMCTGPMSTHLIQAALATYEGT---------PNPKRIIAVGDCAL 112 Query: 163 WGCVQ----AARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYM 208 G + AA +A P+D IK+PGCPP PD + ++ + Sbjct: 113 DGGMFKEAYAAHNGVGEALPVD--------IKIPGCPPSPDELLKVLLQL 154 >UniRef50_C8QXK1 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QXK1_9DELT Length = 178 Score = 88.6 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 35/200 (17%), Positives = 59/200 (29%), Gaps = 54/200 (27%) Query: 49 KPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDI 108 R+ V + C+ C SF + + L Y + D Sbjct: 2 SGRLRVATVWLDGCSGCHMSF--LDMDELLLELAPRLELAYSPLV-------------DR 46 Query: 109 ITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQA 168 + + +EG E K + A + ++A G CA G V A Sbjct: 47 KEFPDRVDLALLEGAVSTPEDEA-----------KARLVRAHSRLVVALGDCACQGNVPA 95 Query: 169 ARP-----------------NPTQATP-------IDKVITDKPIIKV----PGCPPIPDV 200 R P A P + + +I V PGCPP P Sbjct: 96 LRNRLDNEQLLDLVYRQQADGPAAAPPDRNVPPLLTHSLPLHRVIAVDLFLPGCPPPPAA 155 Query: 201 MSAIITYMVTFDRLPDVDRM 220 + +T ++ + L ++ + Sbjct: 156 IVRALTAVLDGETLSELPTL 175 >UniRef50_B9L8U0 Hydrogenase-4 component I n=2 Tax=Epsilonproteobacteria RepID=B9L8U0_NAUPA Length = 164 Score = 88.6 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 21/159 (13%), Positives = 42/159 (26%), Gaps = 35/159 (22%) Query: 48 NKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFED 107 K ++ + C C + + P +++ Sbjct: 8 RKKSPWILHYNTGGCNGCDIEILAALAPKYDIERFGMLN--------------------- 46 Query: 108 IITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQ 167 IL V G R + +L ++A G CA G + Sbjct: 47 -RGNPKQSDILLVTGPV---------TKRCRDVLRRLYLEMPEPKVVVAMGACAHGGGIF 96 Query: 168 AARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIIT 206 + +D +I + +PGC P + + + Sbjct: 97 RDFYHVEN--GVDNIIPVD--VWIPGCAPRVEAVIDGMV 131 >UniRef50_C7PSH0 NADH-quinone oxidoreductase, B subunit n=4 Tax=Sphingobacteriales RepID=C7PSH0_CHIPD Length = 187 Score = 88.2 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 50/158 (31%), Gaps = 35/158 (22%) Query: 51 RIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIIT 110 R +W +CC F+ + MA+ + E + Sbjct: 38 RKNSIWPLPFATSCCGIEFMAT---------------------MASTYDMSRFGSERMAF 76 Query: 111 QYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAAR 170 +L V G P + ++ A ++A G CAS G V Sbjct: 77 TPRQCDLLMVMGTISKKMA---------PVLRQVYLQMAEPRWVVAVGACASSGGVF--- 124 Query: 171 PNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYM 208 + ID+VI + VPGCPP P+ + + Sbjct: 125 DTYSVLQGIDQVIPVD--VYVPGCPPRPEAIIDGFMRV 160 >UniRef50_B6IT61 Hydrogenase-4 component I n=4 Tax=Bacteria RepID=B6IT61_RHOCS Length = 196 Score = 87.9 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 45/167 (26%), Gaps = 35/167 (20%) Query: 50 PRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDII 109 + + + C C +P+ E + Sbjct: 43 RSLAIRQVDAGSCNACEMEIHALNNPV----------------------YDLERFGFSFV 80 Query: 110 TQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAA 169 +L V G + + A ++A G CA G A Sbjct: 81 ASPRHADVLLVTGPVTTNMREALLKT---------WEATPDPKWVVALGQCAIDGGPFAD 131 Query: 170 RPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPD 216 ++KV+ + +PGCPP P + A + ++ + P Sbjct: 132 SYAVVG--GVEKVVPVD--LMIPGCPPRPVDILAALVALIEAEARPP 174 >UniRef50_Q58758 Uncharacterized protein MJ1363 n=17 Tax=Euryarchaeota RepID=Y1363_METJA Length = 151 Score = 87.9 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 52/174 (29%), Gaps = 39/174 (22%) Query: 42 IAWALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQA 101 + + K I V+ ++ C C + + + S Y A Sbjct: 4 MIKKIARKKCIHVMLVYTGGCNACDIEVVNA-----------IFSPFY----------DA 42 Query: 102 EEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCA 161 E+ + IL V G + K+ A++A G CA Sbjct: 43 EQYNVFLTFNPREADILVVTGCVTKVVAES---------LRKIYEKIPEPKAVVAVGACA 93 Query: 162 SWGCVQAARPNPTQATPIDKVITDK-----PI-IKVPGCPPIPDVMSAIITYMV 209 G V N + P+ +KVPGC P P+ + A I + Sbjct: 94 LMGGV---YKNIGGDLGTSDFVAGPVENIIPVDVKVPGCAPRPEDIIAGIVKAL 144 >UniRef50_A4EBM2 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EBM2_9ACTN Length = 195 Score = 86.7 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 41/158 (25%), Gaps = 35/158 (22%) Query: 49 KPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDI 108 V+ G C C + S PL +++ Sbjct: 6 SRSPWVIHYDGSSCNGCDIEVLASLTPLFDAERFGVVN---------------------- 43 Query: 109 ITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQA 168 I V G+ P + ++ ++A G CA G V Sbjct: 44 TGNPKHADIFLVTGSVNAQN---------LPVVRQIYNQMLEPKCVVACGICACSGGVFR 94 Query: 169 ARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIIT 206 N +D+ I + PGC P+ + I Sbjct: 95 DAYNVIG--GVDRAIPVD--VYAPGCAIRPETVIDAIV 128 >UniRef50_C5A2Q7 Formate hydrogenlyase II subunit H (Mhy2H) n=3 Tax=Thermococcus RepID=C5A2Q7_THEGJ Length = 283 Score = 86.7 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 50/185 (27%), Gaps = 51/185 (27%) Query: 50 PRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDII 109 + V + C C P AE + + Sbjct: 4 RSLYVFHLDTGACNGCEIELFDILTP----------------------YYDAERLGVRLA 41 Query: 110 TQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAA 169 + +A G PL Q + E +K I+A GTCA G + Sbjct: 42 ASPRHAHAMAATG--PLTRQAYYA------AKEAIKAMPPKPRIIVAIGTCACSGGIFYN 93 Query: 170 RP-------------NPTQATPIDKVITDK--------PIIKVPGCPPIPDVMSAIITYM 208 + I +++ D P++ +PGCPP P+ + + Sbjct: 94 GYPIYRRPESGREGQEYPRRGGIFELVQDLRDEGEYVGPVVYIPGCPPRPEEILYGVALA 153 Query: 209 VTFDR 213 + Sbjct: 154 LGLVE 158 >UniRef50_B6GAA3 Putative uncharacterized protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GAA3_9ACTN Length = 228 Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 24/159 (15%), Positives = 40/159 (25%), Gaps = 35/159 (22%) Query: 48 NKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFED 107 + ++ G C C + S PL +I+ Sbjct: 4 SSKSPWLIHYDGSSCNGCDIEVLDSMMPLYDIERFGIIN--------------------- 42 Query: 108 IITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQ 167 I V G+ + + ++A G CA G V Sbjct: 43 -TGNPKHADIFLVTGSVNAQNIE---------VVRHIYDQMLEPKVVVACGICACTGGVF 92 Query: 168 AARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIIT 206 N +DK I + PGC P+ + + Sbjct: 93 RDCYNVIG--GVDKAIPVD--VYAPGCAVRPETIIDAVL 127 >UniRef50_A0RY66 NADH-ubiquinone oxidoreductase, subunit B n=3 Tax=Thaumarchaeota RepID=A0RY66_CENSY Length = 160 Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 48/161 (29%), Gaps = 34/161 (21%) Query: 48 NKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFED 107 N RI +W +E CC+ F ++ P +I Sbjct: 21 NWGRIWSLWPVHIETACCSVEFGAASGPKYDVERFGIIE--------------------- 59 Query: 108 IITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQ 167 ++ V+G P + + +IA G CA G + Sbjct: 60 AFGSLRQCDLIVVQGTITRKMA---------PRLRLVYDQMPEPKYVIAMGACAITGGLY 110 Query: 168 AARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYM 208 N ID V+ + VPGCPP P+ + + Sbjct: 111 FDSYNV--LPGIDGVLPVD--VYVPGCPPRPETLIQGCMLL 147 >UniRef50_C7JEU9 NADH-ubiquinone oxidoreductase 20 kDa subunit n=8 Tax=Acetobacter pasteurianus RepID=C7JEU9_ACEP3 Length = 165 Score = 85.9 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 56/169 (33%), Gaps = 37/169 (21%) Query: 50 PRIPVV--WIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFED 107 PR P++ + C C L +L Y M AG Sbjct: 24 PRWPLLLFHVDTGGCGGCGM---------------ELQALRYAPYDMEGAGFGF------ 62 Query: 108 IITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQ 167 +T +L + G P +E +A +IA G+CA G + Sbjct: 63 -VTSPRNADVLLITGALTRAMA---------PVLEAAWQAMPTPKGLIAVGSCALDGGMF 112 Query: 168 AARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPD 216 N T +++ ++ +K+PGCPP P + + + +P Sbjct: 113 --PENYTVLGGLERRVSID--LKIPGCPPAPQDVLNGLCSLFGKQAVPP 157 >UniRef50_C1A8Z3 NADH-quinone oxidoreductase chain B n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A8Z3_GEMAT Length = 212 Score = 84.8 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 52/177 (29%), Gaps = 35/177 (19%) Query: 46 LENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVF 105 L N R +W CC F+ +A + L Y Sbjct: 34 LVNWGRAGSLWPMPFGTACCAIEFMATAASRFDLSRFGMERLSYSP-------------- 79 Query: 106 EDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGC 165 +L G PL P + ++ + +I+ G CAS G Sbjct: 80 -------RQADVLLCAGRVPLKLA---------PVLRRIYQQMPQPKWVISMGACASTGG 123 Query: 166 VQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGR 222 + N ID +I + VPGCPP P+ + I + + R Sbjct: 124 MF---DNYAVVQGIDTIIPVD--VYVPGCPPRPEALMHAIIMLQKKVMQERLKDSTR 175 >UniRef50_C7IG01 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IG01_9CLOT Length = 266 Score = 84.4 bits (207), Expect = 6e-15, Method: Composition-based stats. Identities = 25/173 (14%), Positives = 45/173 (26%), Gaps = 37/173 (21%) Query: 34 LGAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTL 93 +G + K+A + + + C C P Sbjct: 125 IGKKLNEKVAKKF--GRSLNIREVDAGSCNGCDYEIQALNGP------------------ 164 Query: 94 MAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASA 153 E + +L V G + + A Sbjct: 165 ----YNDIERFGIHFVASPRHADMLLVTGCVSRNMEEALVKT---------YNATPSPKL 211 Query: 154 IIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIIT 206 ++A G CA G + + + ID ++ + +PGCPP P + I Sbjct: 212 VVAAGACACSGGLF--KDSYAGRNGIDTILPVD--VYIPGCPPRPQALIYGIL 260 >UniRef50_Q1IPE7 NADH-quinone oxidoreductase subunit B 1 n=10 Tax=Bacteria RepID=NUOB1_ACIBL Length = 213 Score = 84.4 bits (207), Expect = 6e-15, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 39/116 (33%), Gaps = 15/116 (12%) Query: 94 MAAAGTQAEEVFEDIIT-QYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGAS 152 M A+ ++ ++ + G P I L Sbjct: 90 MGASRFDIARFGAEVFRPSPRQSDLMIIAGRVSQKMA---------PVIRHLYLQMPEPK 140 Query: 153 AIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYM 208 +I+ G CA+ G V N +++ I I VPGCPP P+ + IT + Sbjct: 141 WVISMGACATSGGVF---NNYALVQGVNQYIPVD--IYVPGCPPRPEQLIYAITLL 191 >UniRef50_Q8DKZ4 NAD(P)H-quinone oxidoreductase subunit K n=21 Tax=cellular organisms RepID=NDHK_THEEB Length = 237 Score = 84.4 bits (207), Expect = 6e-15, Method: Composition-based stats. Identities = 25/173 (14%), Positives = 49/173 (28%), Gaps = 34/173 (19%) Query: 49 KPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDI 108 R+ +W CC F M + + Sbjct: 37 WARLSSLWPLMYGTACCFIEFAA----------------------MIGSRFDFDRFGLVP 74 Query: 109 ITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQA 168 ++ G + P + +L +IA G C G + + Sbjct: 75 RNSPRQADLIITSGTITMKMA---------PALVRLYEQMPSPKYVIAMGACTITGGMFS 125 Query: 169 ARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMG 221 + + + +DK+I + +PGCPP P+ + I + ++ G Sbjct: 126 S-DSYSAVRGVDKLIPVD--VYLPGCPPRPEAIMDAIVKLRKKIANEHINERG 175 >UniRef50_UPI00016C3AA7 NADH-quinone oxidoreductase, B subunit n=2 Tax=Bacteria RepID=UPI00016C3AA7 Length = 201 Score = 83.6 bits (205), Expect = 9e-15, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 51/179 (28%), Gaps = 35/179 (19%) Query: 30 TSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDY 89 + L N R +W CC + +A Sbjct: 2 ALTNMLPDFMIAPLDYLANMARKHSLWPMPFATACCGIELMATASSRYD----------- 50 Query: 90 DDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAA 149 +A G++A ++ V G + P ++++ Sbjct: 51 ----IARFGSEAMRF------SPRQCDVMIVAGRVAMKM---------VPVMQRIWLQMP 91 Query: 150 GASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYM 208 I+ G CAS G V ID+ I + VPGCPP P+ + + + Sbjct: 92 EPKWCISMGACASSGGVF---DTYAVVQGIDRFIPVD--VYVPGCPPRPEQLIRAVLDL 145 >UniRef50_Q0W2X8 Coenzyme F420-reducing hydrogenase, gamma subunit n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W2X8_UNCMA Length = 232 Score = 83.2 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 64/173 (36%), Gaps = 35/173 (20%) Query: 49 KPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDI 108 + ++H C+ C SF+ + + ++ ++ +DY + A Sbjct: 1 MTKPKFAYVHLAACSGCEISFLDNFERVLD--MMDMVDIDYMTLIADAT----------- 47 Query: 109 ITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASW----- 163 + +L V+G L + +E LK+A ++AWG C+S Sbjct: 48 --EIPKVDLLFVDGAACLQS---------KESVESLKKARENTGFLVAWGGCSSTATINN 96 Query: 164 ---GCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDR 213 G Q+ +P I +++ VPG PP P++ +I V D Sbjct: 97 FSRGG-QSPQPQHESFPQISRLVKVDAF--VPGSPPGPEMAYNVIRAFVEGDT 146 >UniRef50_B6YR59 NADH-quinone oxidoreductase subunit B n=5 Tax=Bacteroidales RepID=NUOB_AZOPC Length = 191 Score = 83.2 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 54/169 (31%), Gaps = 34/169 (20%) Query: 46 LENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVF 105 L N R VW +CC F+ L AA A + Sbjct: 34 LINWGRSNSVWPLTFATSCCGIEFMC---------------------LGAARYDFARFGW 72 Query: 106 EDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGC 165 E ++ G P +++L + +IA G+CA G Sbjct: 73 EVTRNSPRQADVVFCCGTIVHKMA---------PVLKRLYDQMSEPKYVIALGSCAISGG 123 Query: 166 VQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRL 214 + + IDK+I + +PGCPP PD M + + ++ Sbjct: 124 PF--KSSYHTIMGIDKIIPVD--VYIPGCPPRPDAMIYGMIQLARKIKV 168 >UniRef50_Q21TB3 NADH ubiquinone oxidoreductase, 20 kDa subunit n=2 Tax=Proteobacteria RepID=Q21TB3_RHOFD Length = 254 Score = 82.9 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 30/206 (14%), Positives = 60/206 (29%), Gaps = 41/206 (19%) Query: 14 QGVTRRSFLKYCSLAATSLGLGAGMAPK----IAWALENK--PRIPVVWIHGLECTCCTE 67 + ++ + +K C+ + +L + + ++ AL + + + + C+ C Sbjct: 84 RKLSFNNDVKLCATSREALTVSSAHPNLDPIKVSKALHKRFGRSLKLRSVSAGGCSGCEM 143 Query: 68 SFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLG 127 ++ DI+ L + G Sbjct: 144 EINALSNVNFD----------------------LGRYGIDIVASPRHADALVLSGPITRN 181 Query: 128 EQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKP 187 ++ A +IA G CA G V A + A + KP Sbjct: 182 MAQ---------ALQICWDAIPEPKLVIAVGACAISGGVFAD----SDALDRQFLDNFKP 228 Query: 188 IIKVPGCPPIPDVMSAIITYMVTFDR 213 + VPGCP P + I ++ Sbjct: 229 ALYVPGCPAHPLTFISGIMDLLGIAP 254 >UniRef50_A2BJ94 NAD(P)H-quinone oxidoreductase chain K n=10 Tax=Thermoprotei RepID=A2BJ94_HYPBU Length = 209 Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 30/197 (15%), Positives = 55/197 (27%), Gaps = 39/197 (19%) Query: 14 QGVTRRSFLKYCSLA--ATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFIR 71 R+ F+ A + + + K +L + +W L +CC F Sbjct: 3 MACPRKGFM-LVGRLEEAAAKAMKWLLERKPIKSLLDWGISFSLWPVHLTTSCCGAEFAA 61 Query: 72 SAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGM 131 P L + + +L VEG Sbjct: 62 VYDPKYDSERLGSLPFTH----------------------PRNTNVLLVEGTLTRKMARA 99 Query: 132 FCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKV 191 + +IA G CA G + N +++++ V Sbjct: 100 A---------RLVWEQMPWPKFVIAMGACAITGGIFYNSYN---IVRVNQILPVD--YYV 145 Query: 192 PGCPPIPDVMSAIITYM 208 PGCPP P+ ++ + + Sbjct: 146 PGCPPTPEAVANALIKL 162 >UniRef50_A6L170 NADH-quinone oxidoreductase subunit B n=35 Tax=Bacteroidales RepID=NUOB_BACV8 Length = 198 Score = 82.5 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 54/171 (31%), Gaps = 34/171 (19%) Query: 46 LENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVF 105 L N R +W +CC F+ + AA A F Sbjct: 44 LINWGRSNSLWPLTFATSCCGIEFMA---------------------VGAARYDFARFGF 82 Query: 106 EDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGC 165 E ++ V G P +++L A +IA G CA G Sbjct: 83 EVARASPRQADMIMVAGTITHKMA---------PVLKRLYDQMADPKYVIAVGGCAISGG 133 Query: 166 VQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPD 216 + + +DK++ + +PGCPP P+ + + + +L Sbjct: 134 PF--KKSYHVLNGVDKILPVD--VYIPGCPPRPEALLYGMIQLQRKVKLEK 180 >UniRef50_A6LXQ4 NADH-quinone oxidoreductase subunit B n=4 Tax=Bacteria RepID=NUOB_CLOB8 Length = 169 Score = 82.1 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 41/119 (34%), Gaps = 16/119 (13%) Query: 93 LMAAAG---TQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAA 149 +MAA G A +E ++ V G P ++K+ Sbjct: 50 MMAAGGARYDIARFGYEVFRASPRQADLMIVAGTITEKMA---------PIVKKIYDQMP 100 Query: 150 GASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYM 208 +IA G+CA+ G N D + + +PGCPP P+ + + + Sbjct: 101 EPKWVIAMGSCATSGGPFVDSYNV--VPGADTFLPVD--VYIPGCPPRPEALIHGLLTL 155 >UniRef50_A1ASR2 NADH ubiquinone oxidoreductase, 20 kDa subunit n=3 Tax=cellular organisms RepID=A1ASR2_PELPD Length = 179 Score = 82.1 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 24/157 (15%), Positives = 46/157 (29%), Gaps = 35/157 (22%) Query: 50 PRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDII 109 + V + C C + P E ++ Sbjct: 12 RSLWVYHANSGGCNGCDIEVLNVLTP----------------------YYDVERFGIKLV 49 Query: 110 TQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAA 169 ++ +G + S +++ A G + A G+CA G + Sbjct: 50 GSPRHADVMLCQGP---------AMRSTGKALQRAYAAMPGPKLVFAIGSCACGGGI--W 98 Query: 170 RPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIIT 206 + P++K+I VPGCPP P+ + + Sbjct: 99 HDSYAVHGPVEKLIPVN--YYVPGCPPRPEAIIWGVA 133 >UniRef50_C6X0Z2 NADH-ubiquinone oxidoreductase chain B n=2 Tax=Flavobacteriaceae RepID=C6X0Z2_FLAB3 Length = 185 Score = 81.3 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 49/160 (30%), Gaps = 35/160 (21%) Query: 49 KPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDI 108 R +W +CC F+ +P + E Sbjct: 34 MARKYSLWPLPFATSCCGIEFMAVLNPTYDASRFGM---------------------ERN 72 Query: 109 ITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQA 168 +L V G P ++++ A ++A G CAS G + Sbjct: 73 SFSPRQADMLMVCGTISKKLG---------PVLKQVYTQMAEPRWVVAVGACASSGGIF- 122 Query: 169 ARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYM 208 + IDK+I + VPGCPP P+ + + + Sbjct: 123 --DTYSVLQGIDKIIPVD--VYVPGCPPRPEQIIEGVMQV 158 >UniRef50_B0TH78 NADH-quinone oxidoreductase subunit B n=5 Tax=Bacteria RepID=NUOB_HELMI Length = 175 Score = 81.3 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 51/172 (29%), Gaps = 34/172 (19%) Query: 44 WALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEE 103 A+ N R +W CC + + MA G + Sbjct: 29 EAVFNWARGNSLWPLSSGLACCAIEMMATGASRFD---------------MARFGYEVFR 73 Query: 104 VFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASW 163 ++ + G P I+++ IIA G+CA Sbjct: 74 P------SPRQADLIIIAGTLTWKMA---------PAIQRVYEQMPEPKWIIAMGSCACT 118 Query: 164 GCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLP 215 G A + +DKVI + VPGCPP P+ + + + P Sbjct: 119 GGPFA--DSYAVVPGVDKVIPVD--VYVPGCPPRPEALLDGFLKLKAKIQNP 166 >UniRef50_B1W4V9 NADH-quinone oxidoreductase subunit B 2 n=27 Tax=Bacteria RepID=NUOB2_STRGG Length = 235 Score = 81.3 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 61/177 (34%), Gaps = 34/177 (19%) Query: 32 LGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDD 91 LG+ + +AP+ + N R +W+ CC FI ++ + L +I Sbjct: 31 LGVLSRLAPEPMKVVLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPF---- 86 Query: 92 TLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGA 151 ++ V G P +++L Sbjct: 87 -----------------APGPRQADLMIVSGTVTDKMA---------PAVKRLYEQMPEP 120 Query: 152 SAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYM 208 +I++G C++ G + T +D++I + VPGCPP P+ + I + Sbjct: 121 KYVISFGACSNCGGPYWDSYSVT--KGVDQIIPVD--VYVPGCPPRPEALLQGILKL 173 >UniRef50_P16433 Formate hydrogenlyase subunit 7 n=169 Tax=Bacteria RepID=HYCG_ECOLI Length = 255 Score = 81.3 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 26/195 (13%), Positives = 46/195 (23%), Gaps = 38/195 (19%) Query: 19 RSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFIRSAHPLAK 78 R + + A + K V + C C + PL Sbjct: 8 RDANGIPVPMTVDESIASMKASLLKKI---KRSAYVYRVDCGGCNGCEIEIFATLSPLFD 64 Query: 79 DVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGR 138 AE ++ IL G + Sbjct: 65 ----------------------AERFGIKVVPSPRHADILLFTGAVTRAMRSPAL----- 97 Query: 139 PFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIP 198 + ++A I++G C + G + DK++ + +PGCPP P Sbjct: 98 ----RAWQSAPDPKICISYGACGNSGGIFHDLYCVWG--GTDKIVPVD--VYIPGCPPTP 149 Query: 199 DVMSAIITYMVTFDR 213 + Sbjct: 150 AATLYGFAMALGLLE 164 >UniRef50_Q1AVI4 NADH-quinone oxidoreductase subunit B n=15 Tax=Bacteria RepID=NUOB_RUBXD Length = 251 Score = 80.9 bits (198), Expect = 7e-14, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 32/114 (28%), Gaps = 13/114 (11%) Query: 111 QYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAAR 170 ++ V G +L +IA G CA G Sbjct: 64 SPRQADVMIVSGTVSTKMAERMT---------RLYEQMPEPKWVIAMGACAISGGPFLDG 114 Query: 171 PNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPL 224 + D+VI + VPGCPP P+ + I + +P Sbjct: 115 --YSVLMGADRVIPVD--VYVPGCPPRPEALIFGIMTLQKKIEREQQVGYEKPR 164 >UniRef50_B1L7S0 F420H2 dehydrogenase subunit n=3 Tax=Archaea RepID=B1L7S0_KORCO Length = 174 Score = 80.9 bits (198), Expect = 7e-14, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 40/128 (31%), Gaps = 16/128 (12%) Query: 94 MAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASA 153 AA AE + +L +EG + Sbjct: 60 SAAPKYDAERLGFLPFIGIRQCNVLFIEGTLSKKMAEAAI---------WVYEQMPEPKF 110 Query: 154 IIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI-IKVPGCPPIPDVMSAIITYMVTFD 212 +I G CA G + N + I P+ + +PGCPP P+ ++ I + Sbjct: 111 VIGMGACAIDGGIFWNSYNIVRPMDI------LPVNVFIPGCPPRPEAVAQAIIMLQRKI 164 Query: 213 RLPDVDRM 220 R ++ + Sbjct: 165 RKGELVKY 172 >UniRef50_Q1IZX2 NADH-quinone oxidoreductase subunit B n=16 Tax=cellular organisms RepID=NUOB_DEIGD Length = 178 Score = 80.5 bits (197), Expect = 8e-14, Method: Composition-based stats. Identities = 29/178 (16%), Positives = 46/178 (25%), Gaps = 35/178 (19%) Query: 44 WALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEE 103 L R +W CC + S Sbjct: 25 EKLVAWGRSNSLWPATFGLACCAIEMMSSTDGRNDLSRFGS------------------- 65 Query: 104 VFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASW 163 E ++ V G P + ++ +I+ G CAS Sbjct: 66 --EVFRASPRQADVMIVAGRLSKKMA---------PIMRRVYDQMPDPKWVISMGACASS 114 Query: 164 GCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMG 221 G + N +D V+ + VPGCPP P+ + + + R D G Sbjct: 115 GGMF---NNYAVVQNVDHVVPVD--VFVPGCPPRPEALIYAVMQLQKKVRGEAYDARG 167 >UniRef50_Q1D8S3 NADH-quinone oxidoreductase subunit B n=2 Tax=Cystobacterineae RepID=NUOB_MYXXD Length = 187 Score = 80.5 bits (197), Expect = 9e-14, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 43/115 (37%), Gaps = 15/115 (13%) Query: 95 AAAGTQAEEVFEDIIT-QYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASA 153 AA+ + +L V G L + P ++++ A Sbjct: 55 AASRHDISRFGAEFPRFSPRQADLLMVVGTINLKQA---------PILKRVYEQMAEPKW 105 Query: 154 IIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYM 208 ++A+G CAS G N ID++I + +PGCPP P+ + + + Sbjct: 106 VVAFGVCASSGGF---YDNYAVLQGIDRIIPVD--VYIPGCPPRPEQVLDGLMLL 155 >UniRef50_B8HLE8 NAD(P)H-quinone oxidoreductase subunit K 2 n=94 Tax=cellular organisms RepID=NDHK2_CYAP4 Length = 259 Score = 80.5 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 48/161 (29%), Gaps = 34/161 (21%) Query: 48 NKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFED 107 N RI ++ CC F M A+ E Sbjct: 36 NWARISSIYPLMYGTACCFIEFAA----------------------MIASRFDMERFGMF 73 Query: 108 IITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQ 167 ++ + G + +L +IA G C G + Sbjct: 74 PRASPRQADLIILAGTLTMQMA---------VPTRRLYDQMPEPKYVIAMGACMITGGMF 124 Query: 168 AARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYM 208 +A +PT DK++ + +PGCPP P+ + +T + Sbjct: 125 SA-DSPTALRGADKLLPID--VYIPGCPPRPEAILDAVTKL 162 >UniRef50_C5GDP9 NADH-ubiquinone oxidoreductase 20 kDa subunit n=2 Tax=Ajellomyces dermatitidis RepID=C5GDP9_AJEDR Length = 245 Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 47/163 (28%), Gaps = 35/163 (21%) Query: 43 AWALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAE 102 A+ N R +W L CC + + P L I Sbjct: 98 IDAVANWGRQASLWPISLGLACCGLEMMAVSMPRYDQDRLGTI----------------- 140 Query: 103 EVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCAS 162 +L V G P + + +I+ G+CA+ Sbjct: 141 -----FRASPRQSDLLIVAGTVTNKMA---------PALRLVYDQMPDPKWVISMGSCAN 186 Query: 163 WGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAII 205 G + + +D+++ + +PGCPP + + I Sbjct: 187 GGGYY--HYSYSVVRGVDRLLPVD--VYLPGCPPTAEALMYAI 225 >UniRef50_B1ZSE5 NADH ubiquinone oxidoreductase 20 kDa subunit n=14 Tax=Bacteria RepID=B1ZSE5_OPITP Length = 279 Score = 79.8 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 24/161 (14%), Positives = 41/161 (25%), Gaps = 35/161 (21%) Query: 50 PRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDII 109 + + + C C + P+ E ++ Sbjct: 149 RSLHIREVDAGSCNGCEVEINALSGPI----------------------YDLERFGIHLV 186 Query: 110 TQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAA 169 +L V G + K A ++A G C G + Sbjct: 187 ASPRHADMLLVTGPVTRNM---------ELALRKTYDATPEPRLVVAVGACGCSGGMFG- 236 Query: 170 RPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVT 210 N +D V+ + +PGCPP P + I V Sbjct: 237 -RNYATCGSVDSVLPVD--VYIPGCPPNPFALLHGILLAVG 274 >UniRef50_Q53161 Hydrogen uptake hydrogenase small subunit (Fragment) n=2 Tax=Rhodobacteraceae RepID=Q53161_RHOSH Length = 59 Score = 79.8 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 39/59 (66%), Positives = 45/59 (76%) Query: 1 MNNEETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHG 59 M ETFY MRRQG+TRRSF+KYCSL A +LGLG PKIA A+E KPR PV+W+HG Sbjct: 1 MPQIETFYDVMRRQGITRRSFMKYCSLTAAALGLGPSFVPKIAHAMETKPRTPVIWVHG 59 >UniRef50_C7IWD0 Os01g0791600 protein n=3 Tax=Oryza sativa Japonica Group RepID=C7IWD0_ORYSJ Length = 379 Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 43/128 (33%), Gaps = 13/128 (10%) Query: 85 ISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKL 144 I Y T + + + ++ G + P + +L Sbjct: 140 IPPTYSKTF-QGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMA---------PSLVRL 189 Query: 145 KRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAI 204 +IA G C G + + + + +DK+I + +PGCPP P+ + Sbjct: 190 YEQMPEPKYVIAMGACTITGGMFST-DSYSTVRGVDKLIPVD--VYLPGCPPKPEAVIDA 246 Query: 205 ITYMVTFD 212 +T ++ Sbjct: 247 LTKLLGLA 254 >UniRef50_B2IID4 NADH ubiquinone oxidoreductase 20 kDa subunit n=9 Tax=Bacteria RepID=B2IID4_BEII9 Length = 177 Score = 79.0 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 26/166 (15%), Positives = 44/166 (26%), Gaps = 34/166 (20%) Query: 50 PRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDII 109 + + + C C + A E + Sbjct: 41 RSLAIREVDAGSCNGCELEI----------------------NALGNAFYDLERFGLRFV 78 Query: 110 TQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAA 169 +L V G + + A ++A GTCA V A Sbjct: 79 ASPRHADVLLVTGPVTHNMREALLRT---------YDATPNPKWVVAAGTCALGEGVFAE 129 Query: 170 RPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLP 215 Q + VI + +PGCPP P + + ++T + P Sbjct: 130 SYAC-QKGGVSAVIAVD--LYIPGCPPTPTDLLKGLLALITKNTGP 172 >UniRef50_Q0W2C0 Hydrogenase, small subunit-like protein (HycG-like) n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W2C0_UNCMA Length = 247 Score = 79.0 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 49/175 (28%), Gaps = 37/175 (21%) Query: 35 GAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLM 94 G + KI A + + + C C + SL + Y Sbjct: 102 GRELEKKIKKAF--GRSLAIREVDAGSCNGCEVE------------VNSLSNAIY----- 142 Query: 95 AAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAI 154 E I+ L V G + S A + Sbjct: 143 -----DIERFGLHIVASPRHADALLVTGPVTRNMERGLMQS---------YNATPDPKMV 188 Query: 155 IAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMV 209 IA G CA G + R + +D ++ + +PGCPP P + I + Sbjct: 189 IAMGACAITGGIF--RDSYAVYNGVDALVPVD--VYIPGCPPRPQAIIQGIMLAI 239 >UniRef50_C5CEV5 NADH ubiquinone oxidoreductase 20 kDa subunit n=2 Tax=cellular organisms RepID=C5CEV5_KOSOT Length = 137 Score = 79.0 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 53/162 (32%), Gaps = 35/162 (21%) Query: 49 KPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDI 108 K + V + C C + P E + Sbjct: 9 KRSLWVFHVSASPCNNCDIEILDMLTPR----------------------YDLERFGIKL 46 Query: 109 ITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQA 168 + +L V G G C S R ++ A +IA GTC G Sbjct: 47 VGSVRHADVLLVTG-----MGG--CKVSERVI--RIYNQAPKPVFVIAVGTCPVAGATF- 96 Query: 169 ARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVT 210 + + T+ P+D+ + + +PGCPP P+ M A ++ ++ Sbjct: 97 -KESYTRCGPLDRFVPVD--LYIPGCPPKPETMIAGLSELLG 135 >UniRef50_B6YWP9 NADH dehydrogenase (Ubiquinone), 20 kDa subunit n=4 Tax=Archaea RepID=B6YWP9_THEON Length = 191 Score = 78.6 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 21/167 (12%), Positives = 43/167 (25%), Gaps = 42/167 (25%) Query: 49 KPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDI 108 K + V ++ C C + P E + + Sbjct: 3 KNSLWVFHLNSGSCNGCDIEILNIFAPR----------------------NDVERLGIKL 40 Query: 109 ITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQA 168 + +A G P + +A ++A G CA G + Sbjct: 41 VGSPRHADAIAFTGPITRE---------CLPKVIDALKAVPEPKVVLAIGACACGGGI-- 89 Query: 169 ARPNPTQATPIDKVITD---------KPIIKVPGCPPIPDVMSAIIT 206 + + ++ + +PGCPP P+ + + Sbjct: 90 WYDTYSVIGGVKELYRILKEEYNMEPPATVFIPGCPPKPEAIIYGVA 136 >UniRef50_A5UXK1 NADH-quinone oxidoreductase subunit B 1 n=13 Tax=Bacteria RepID=NUOB1_ROSS1 Length = 268 Score = 78.2 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 25/161 (15%), Positives = 42/161 (26%), Gaps = 34/161 (21%) Query: 48 NKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFED 107 N R +W CC + + E Sbjct: 26 NWGRRSSIWPLSFGLACCAIEMMATGLARFDLARFGA---------------------EM 64 Query: 108 IITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQ 167 ++ V G P + +L +I+ G CA+ G Sbjct: 65 FRASPRQADLMIVAGTVTKKMA---------PQVVRLYNQMPEPRYVISMGACATSGGPF 115 Query: 168 AARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYM 208 N ID +I + +PGCPP P+ + + + Sbjct: 116 RDGYNV--LRGIDLLIPVD--VYIPGCPPRPEALLHALMTL 152 >UniRef50_C9RKY2 NADH-quinone oxidoreductase, B subunit n=2 Tax=cellular organisms RepID=C9RKY2_FIBSS Length = 419 Score = 77.8 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 43/161 (26%), Gaps = 33/161 (20%) Query: 48 NKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFED 107 N R +W +CC + S A A E Sbjct: 29 NWARANSIWPLTYGTSCCAIEMMSS---------------------SMARYDIARFGSEV 67 Query: 108 IITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQ 167 + + + G P I+ L G +IA G C G Sbjct: 68 FRSSPRQADLFILAGTITRRMA---------PAIQMLWEQIPGPKYVIAMGACTISGG-P 117 Query: 168 AARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYM 208 N + +I + VPGCPP P+ + + + Sbjct: 118 FIYDNYSVVRGAQNLIPVD--VFVPGCPPRPEALFHGLLTL 156 >UniRef50_C6PUG1 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PUG1_9CLOT Length = 242 Score = 77.8 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 25/184 (13%), Positives = 51/184 (27%), Gaps = 37/184 (20%) Query: 27 LAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLIS 86 A+ LG + KI K + + + C C + + Sbjct: 91 KMASIEILGQEVKEKIYSKF--KRSLVLRSVDTGSCNGCMMEVSNTQN------------ 136 Query: 87 LDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKR 146 + V G L + + Sbjct: 137 ----------TYYDLSRYGIKFAASPRHADGIVVTGPVTLNMKEALIKT---------YD 177 Query: 147 AAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIIT 206 A + +IA G+CA G + + + +++++ +I PGCPP P + + Sbjct: 178 AISDPKIVIAVGSCAYSGGIF--KDGYSVCEDLNEILKVNLVI--PGCPPSPQAILYGML 233 Query: 207 YMVT 210 ++ Sbjct: 234 KIIN 237 >UniRef50_A9GUX6 NADH-quinone oxidoreductase subunit B 1 n=10 Tax=Bacteria RepID=NUOB1_SORC5 Length = 194 Score = 77.8 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 37/171 (21%), Positives = 58/171 (33%), Gaps = 35/171 (20%) Query: 38 MAPKIAWALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAA 97 A AL N + ++ + CC ++ A P MA Sbjct: 21 FATTRVDALLNWAKKYSLFQYPFVTACCGMEYMAMASPRFD---------------MARF 65 Query: 98 GTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAW 157 G + +L V G + P ++++ A ++A+ Sbjct: 66 GAEVPRF------SPRQADLLWVVGTISQRQA---------PALKRIYEQMADPKWVLAF 110 Query: 158 GTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYM 208 GTCAS G N T IDKVI + VPGCPP P+ + + + Sbjct: 111 GTCASCGGF---YDNYTTVAGIDKVIPCD--VYVPGCPPRPEAVLDGLMLL 156 >UniRef50_A8M069 NADH-quinone oxidoreductase subunit B 1 n=6 Tax=Actinomycetales RepID=NUOB1_SALAI Length = 188 Score = 77.5 bits (189), Expect = 7e-13, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 56/173 (32%), Gaps = 34/173 (19%) Query: 36 AGMAPKIAWALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMA 95 + + + N R +W+ CC FI ++ + L +I + Sbjct: 4 PAVLGEPIRFVLNWGRRYSLWVFNFGLACCAIEFIATSMSRHDFMRLGVIPFAH------ 57 Query: 96 AAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAII 155 ++ V G P I++L +I Sbjct: 58 ---------------GPRQADLMVVSGTVTDKMA---------PAIKRLYDQMPEPKYVI 93 Query: 156 AWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYM 208 ++G C++ G + T +D++I + VPGCPP P+ + I + Sbjct: 94 SFGACSNCGGPYWDSYSVT--KGVDQLIPVD--VYVPGCPPRPEALLHGILRL 142 >UniRef50_C8W241 Hydrogenase, small subunit-like protein n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W241_DESAS Length = 236 Score = 77.5 bits (189), Expect = 8e-13, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 51/182 (28%), Gaps = 41/182 (22%) Query: 35 GAGMAPKIAWALENKPR------IPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLD 88 A + AL K + + + ++ C C +P+ Sbjct: 88 APASAEDLGRALREKIKKICHRSLHIRYVDAGACNGCDFEINSMTNPV------------ 135 Query: 89 YDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAA 148 ++ D + +L V G + K A Sbjct: 136 ----------YDIQQYGVDFVASPRHADMLLVTGVVTRN---------LEIALHKTYEAC 176 Query: 149 AGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYM 208 + ++A G CA G V + +DK + + VPGCPP P + I Sbjct: 177 PRPALVVAVGACACGGGVF--KEAYASGGGVDKFLPVD--VYVPGCPPTPAQIIKGILTA 232 Query: 209 VT 210 + Sbjct: 233 IG 234 >UniRef50_Q12F15 NADH ubiquinone oxidoreductase, 20 kDa subunit n=15 Tax=Proteobacteria RepID=Q12F15_POLSJ Length = 181 Score = 77.1 bits (188), Expect = 9e-13, Method: Composition-based stats. Identities = 24/158 (15%), Positives = 38/158 (24%), Gaps = 35/158 (22%) Query: 57 IHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKY 116 + C C +P E + + Sbjct: 49 VDAGSCNGCELEIHALNNP----------------------YYNIEGLGIKFVASPRHAD 86 Query: 117 ILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQA 176 +L V G + + A ++A G C G + + Sbjct: 87 MLLVTGPVSRHMDE---------ALRRTYDATPEPKLVVAVGDCGCTGGIFG--DSYASC 135 Query: 177 TPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRL 214 + VI + VPGCPP P + I V R Sbjct: 136 GRVANVIPVD--VTVPGCPPPPIEILRGILTAVRQRRP 171 >UniRef50_A3PKI1 NADH-quinone oxidoreductase subunit B 2 n=6 Tax=Proteobacteria RepID=NUOB2_RHOS1 Length = 205 Score = 77.1 bits (188), Expect = 9e-13, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 49/181 (27%), Gaps = 40/181 (22%) Query: 46 LENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVF 105 L R +W +CC + P+ Sbjct: 29 LVAWSRKHSLWPFNFGLSCCYVEMATALTPVYDQARFGA--------------------- 67 Query: 106 EDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGC 165 E I + +L V G + +L +I+ G CA+ G Sbjct: 68 EVIRSTPRQADLLIVSGTVFRKMAVP---------LYRLYSQMREPRWVISMGACANSGG 118 Query: 166 VQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLM 225 + +D + + VPGCPP P+ + + + + + RPL Sbjct: 119 ---MYDIYSVVQGVDSFLPVD--VYVPGCPPRPEALMEALVLLQS-----KIATEARPLQ 168 Query: 226 F 226 Sbjct: 169 I 169 >UniRef50_Q1IL91 NADH-quinone oxidoreductase subunit B 2 n=4 Tax=Bacteria RepID=NUOB2_ACIBL Length = 202 Score = 77.1 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 38/117 (32%), Gaps = 14/117 (11%) Query: 92 TLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGA 151 T A A E ++ V G L P ++++ Sbjct: 45 TASTARYDIARFGSEVFRPSPRQSDLMIVAGTVTLKMA---------PVVQRIYEQMPEP 95 Query: 152 SAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYM 208 ++A G CAS G +DK++ + V GCPP P+ + + + Sbjct: 96 KWVMAMGACASVGGPF---NTYATLQGVDKIVPVD--VYVVGCPPRPENLFYGLLKL 147 >UniRef50_UPI0001698F29 hypothetical protein Epers_23938 n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001698F29 Length = 156 Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 44/131 (33%), Gaps = 26/131 (19%) Query: 46 LENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVF 105 + + + + C C + + L + + + + + + A AG Sbjct: 2 MMRETKPTLAVHKFSSCDGCQLALLNLGEALLE--LPNYLEIVHF----AEAGPSDPTA- 54 Query: 106 EDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGC 165 + VEG+ E IE++++ + +I+ G CA+ G Sbjct: 55 --------HVDLALVEGSISTPED-----------IERIRQVRKNSDYLISIGACATAGG 95 Query: 166 VQAARPNPTQA 176 +QA R A Sbjct: 96 IQALRNLADGA 106 >UniRef50_B4U8H3 NADH-quinone oxidoreductase subunit B n=4 Tax=Bacteria RepID=NUOB_HYDS0 Length = 177 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 30/174 (17%), Positives = 49/174 (28%), Gaps = 36/174 (20%) Query: 35 GAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLM 94 G G L + R +W + CC + +A L +I Sbjct: 7 GNGFITTTVDELLSWGRRNALWPVTIGLACCAIEMMHAAASRFDIDRLGMI--------- 57 Query: 95 AAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAI 154 +L V G P ++ + Sbjct: 58 -------------FRASPRQADVLIVAGTVVNK---------VAPMLKLVWDQMPEPKWC 95 Query: 155 IAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYM 208 I+ G CAS G P + ID++I + +PGCPP P + + + Sbjct: 96 ISMGGCASAGGPF---PTYSTLQGIDRIIPVD--VYIPGCPPTPQGLIYGLLEL 144 >UniRef50_A3ETD3 Putative hydrogenase-3 (HycG) n=3 Tax=Leptospirillum RepID=A3ETD3_9BACT Length = 169 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 31/196 (15%), Positives = 52/196 (26%), Gaps = 35/196 (17%) Query: 18 RRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFIRSAHPLA 77 R L+ + A L + + + C C Sbjct: 2 YRILLRILKTGLLTEARPPLPPDASAPFLPVGGSLSIRHVDAGSCNACELEL-------- 53 Query: 78 KDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSG 137 M + E + +L V G + Sbjct: 54 --------------HAMNGSYYAPERDGIRFVASPRHADLLLVTGPVSCQME-------- 91 Query: 138 RPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPI 197 +P ++ A A ++A G CA G V R +P +D + + KVPGCPP Sbjct: 92 QPLLDT-HEAMASPKTVLAVGDCACQGGVF--RGSPAVRNGVDGLFPEAR--KVPGCPPS 146 Query: 198 PDVMSAIITYMVTFDR 213 P + + + Sbjct: 147 PSDILRALRGLSRPGP 162 >UniRef50_Q3A825 NADH-quinone oxidoreductase subunit B/C/D n=103 Tax=cellular organisms RepID=NUBCD_PELCD Length = 794 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 24/161 (14%), Positives = 46/161 (28%), Gaps = 35/161 (21%) Query: 48 NKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFED 107 N R +W +CC + S P E Sbjct: 19 NWGRKNSMWPMFFGLSCCFVEMMGSMTPRFDLARFGA---------------------EV 57 Query: 108 IITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQ 167 + ++ + G P ++ A +IA G+CA+ G Sbjct: 58 LRGTPREADLMVIAGTPFKKMAASML---------RVYEEMANPKWVIAMGSCANSGG-- 106 Query: 168 AARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYM 208 + +++V+ + +PGCPP P+ + + Sbjct: 107 -MYDVYSVMQGVNQVLPVD--VYIPGCPPRPEAFMQGLMTL 144 >UniRef50_B1ZRT2 NADH-quinone oxidoreductase subunit B 1 n=4 Tax=Bacteria RepID=NUOB1_OPITP Length = 171 Score = 75.5 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 48/166 (28%), Gaps = 35/166 (21%) Query: 43 AWALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAE 102 A A+ N R +W + CC ++ + + + Sbjct: 23 ADAVINWIRTNSMWPMPMGLACCAIELMQVGNGRFDIARFGAEVMRFSP----------- 71 Query: 103 EVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCAS 162 + V G+ P I ++ +IA G CAS Sbjct: 72 ----------RQSDCMIVAGSVTYKMA---------PQIRRIYDQMMSPKWVIAMGACAS 112 Query: 163 WGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYM 208 G + +D+++ + + GCPP P+ + + + Sbjct: 113 SGG---MYRSYAHMQGVDRILPVD--VYISGCPPRPEGILDALMKL 153 >UniRef50_C7NU23 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Halorhabdus utahensis DSM 12940 RepID=C7NU23_HALUD Length = 191 Score = 75.5 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 30/209 (14%), Positives = 56/209 (26%), Gaps = 60/209 (28%) Query: 38 MAPKIAWALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAA 97 M+ + ++ R V + C+ C F+ H L ++ + + ++ Sbjct: 1 MSAQTEAEAQDDDRTTVATVCLGGCSGCHMEFLNVDHGLVD--LVEEVDIVASHMIVDEK 58 Query: 98 GTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAW 157 G + EG E ++AW Sbjct: 59 GV-------------PEADVGIAEGVVTNEENVEVAEE-----------LRENCDTVVAW 94 Query: 158 GTCASWGCVQAARP--------------------------------NPTQATPIDKVITD 185 G CA+ + + R A P+D+ I Sbjct: 95 GDCAALRGIMSLRNYQDRDEMLEETFMGEADDESEVPFGDDEGVPKLLEDARPLDEYIDV 154 Query: 186 KPIIKVPGCPPIPDVMSAIITYMVTFDRL 214 + VPGCPP +VM + + + Sbjct: 155 D--VYVPGCPPDAEVMKESLEALARGETP 181 >UniRef50_Q0RRW7 NADH-quinone oxidoreductase subunit B n=5 Tax=Bacteria RepID=NUOB_FRAAA Length = 281 Score = 75.5 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 27/181 (14%), Positives = 50/181 (27%), Gaps = 35/181 (19%) Query: 28 AATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISL 87 L G+ L N R +W CC + + Sbjct: 1 MGLEEKLPGGVLLASVEKLANWSRRSSLWPATFGLACCAIEMMSTG-------------- 46 Query: 88 DYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRA 147 A + E ++ V G P + ++ Sbjct: 47 -------AGRYDLSRFGMEVFRASPRQADLMIVAGRVSQKMA---------PVLRQIYDQ 90 Query: 148 AAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITY 207 +++ G CAS G + N +D ++ + +PGCPP P+++ I Sbjct: 91 MPEPKWVLSMGVCASSGGMF---NNYAIVQGVDHIVPVD--MYLPGCPPRPEMLMDAIIK 145 Query: 208 M 208 + Sbjct: 146 L 146 >UniRef50_A6UVJ5 NADH ubiquinone oxidoreductase 20 kDa subunit n=2 Tax=cellular organisms RepID=A6UVJ5_META3 Length = 246 Score = 75.2 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 31/110 (28%), Gaps = 13/110 (11%) Query: 99 TQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWG 158 + L + G + + A +IA G Sbjct: 148 YDLSRFGIKFVASPRHADGLVITGPVTKNMELALMKT---------YDATPSPKFVIAVG 198 Query: 159 TCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYM 208 TCA G + R N +DK++ + +PGCPP P Sbjct: 199 TCAISGGIF--RENEEVVGGVDKILPVD--LYIPGCPPHPFTNLYAFVKF 244 >UniRef50_A4J659 NADH-quinone oxidoreductase subunit B n=34 Tax=Firmicutes RepID=NUOB_DESRM Length = 196 Score = 75.2 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 71/221 (32%), Gaps = 40/221 (18%) Query: 1 MNNEETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGL 60 + +E + + ++R K + A + ++ L N R +W G Sbjct: 13 VAKDEMYEETVKRLK-------KLGAEPAVIGEVARTVSVGPLEKLLNLARANSLWPMGF 65 Query: 61 ECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAV 120 CC + +A+ A A +E + ++ V Sbjct: 66 GLACCAIEGLMAAN--------------------MARFDLARFGYEVMRASPRQADVMLV 105 Query: 121 EGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPID 180 G PF+ +L A +IA G+CA G + + +D Sbjct: 106 CGTVTKKAA---------PFVVRLYEQMAEPKYVIAMGSCAISGGPFV--DSYSVVPGVD 154 Query: 181 KVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMG 221 K+I + +PGC P PD + + P+V + G Sbjct: 155 KLIPVD--VYIPGCAPRPDAVIHGFMKLKEKIINPEVVKRG 193 >UniRef50_D1B297 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B297_SULD5 Length = 138 Score = 74.8 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 41/153 (26%), Gaps = 34/153 (22%) Query: 54 VVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYN 113 V I+ C C + S L + Y Sbjct: 7 VYRINTGSCNGCDVEILASV--LLPKFGFDALGCVY-------------------TNDPT 45 Query: 114 GKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNP 173 IL V G P+++ + ++A G C G V Sbjct: 46 LANILLVTGAITARST---------PYLQAALKQLPSKKIVVALGICPISGGVFRDSYAI 96 Query: 174 TQATPIDKVITDKPIIKVPGCPPIPDVMSAIIT 206 T P+D + + + GCPP P ++ + Sbjct: 97 TG--PLDTFVDVD--VNISGCPPSPKEIAQGLA 125 >UniRef50_D2EGC1 NADH-quinone oxidoreductase, B subunit n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EGC1_9EURY Length = 172 Score = 74.4 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 23/161 (14%), Positives = 39/161 (24%), Gaps = 34/161 (21%) Query: 48 NKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFED 107 N R +W +CC + L ++ Sbjct: 29 NWGRSNSLWPLTFGTSCCAIEMMTFGATKVDADRLGVL---------------------F 67 Query: 108 IITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQ 167 ++ V G + +IA G C G + Sbjct: 68 NGDSPRQSDLILVSGTITKKMARRLL---------NVYEQIPDPKYVIAVGACNVSGGLY 118 Query: 168 AARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYM 208 N ID+++ I PGCPP P+ + + Sbjct: 119 HDSYN--TIEGIDRIMPVDAFI--PGCPPRPEEFLDAVRVL 155 >UniRef50_B1ZUJ0 NADH-quinone oxidoreductase subunit B 2 n=13 Tax=Bacteria RepID=NUOB2_OPITP Length = 191 Score = 74.4 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 48/191 (25%), Gaps = 40/191 (20%) Query: 26 SLAATSLGLGAGMAPKIAWALENKP--------RIPVVWIHGLECTCCTESFIRSAHPLA 77 SL A + + P+++ R +W CC + + Sbjct: 16 SLVAATGPSTPEIPPEVSQIARFAKLDDLLALGRANSLWPLTFGLACCAIEMMAAGMARF 75 Query: 78 KDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSG 137 E ++ V G Sbjct: 76 DISRFGA---------------------EVFRPSPRQADVMIVAGTVNKKMA-------- 106 Query: 138 RPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPI 197 P ++ L +IA G CA G +D++ + VPGCPP Sbjct: 107 -PAVKLLYDQMLEPKWVIAMGQCAISGGPFKYPGQYAVVEGVDQLFPVD--VYVPGCPPR 163 Query: 198 PDVMSAIITYM 208 P+ + I + Sbjct: 164 PEALIEGILKL 174 >UniRef50_Q3ZXS0 NADH-quinone oxidoreductase subunit B n=5 Tax=Dehalococcoides RepID=NUOB_DEHSC Length = 200 Score = 74.4 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 52/175 (29%), Gaps = 36/175 (20%) Query: 35 GAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLM 94 G+ + N R +W CC + M Sbjct: 49 PPGVFITSVEKVLNWSRHYSLWPVMFGLACCAIEMMC----------------------M 86 Query: 95 AAAGTQAEEVFEDI-ITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASA 153 AA+ DI ++ V G P+++++ Sbjct: 87 AASRWDLARFGMDIFRASPRQADLMIVAGTLTWKMA---------PWLKRIYDQMPEPKW 137 Query: 154 IIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYM 208 ++A G C + G + R + + + V+ + VPGCPP P+ + I + Sbjct: 138 VLAMGACGTSGGLF--RDSYSVVPGFNLVVPVD--VYVPGCPPRPEALMRAIMDI 188 >UniRef50_Q9DC70 NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial n=57 Tax=cellular organisms RepID=NDUS7_MOUSE Length = 224 Score = 74.4 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 13/115 (11%) Query: 94 MAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASA 153 MAA + ++ V G P + K+ Sbjct: 107 MAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMA---------PALRKVYDQMPEPRY 157 Query: 154 IIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYM 208 +++ G+CA+ G + + D+++ I VPGCPP + + I + Sbjct: 158 VVSMGSCANGGGYY--HYSYSVVRGCDRIVPVD--IYVPGCPPTAEALLYGILQL 208 >UniRef50_C0QR84 NADH-quinone oxidoreductase chain b (Nadh dehydrogenasei, chain b) (Ndh-1, chain b) n=1 Tax=Persephonella marina EX-H1 RepID=C0QR84_PERMH Length = 181 Score = 74.0 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 46/161 (28%), Gaps = 36/161 (22%) Query: 48 NKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFED 107 + R +W + CC + +A L +I Sbjct: 19 SWGRRNSLWPASVGLACCAIEMMHTAASRFDTDRLGII---------------------- 56 Query: 108 IITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQ 167 +L V G P ++ + +IA G C+S G Sbjct: 57 FRGSPRQSDVLIVAGTVVNK---------VAPMLKLIYDQMPDPKWVIAMGGCSSAGGPF 107 Query: 168 AARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYM 208 P +D++I + VPGCPP P + I + Sbjct: 108 ---PTYATLQGVDRIIPVD--VYVPGCPPTPQALLWGILEL 143 >UniRef50_Q978D5 Formate hydrogenlyase subunit 2 n=2 Tax=Thermoplasmatales RepID=Q978D5_THEVO Length = 222 Score = 74.0 bits (180), Expect = 9e-12, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 48/174 (27%), Gaps = 41/174 (23%) Query: 49 KPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDI 108 + V I C C F+ P A + + Sbjct: 86 RRSFHVFPIDSGACGACNMEFLSIFSP----------------------QYDANRLGIFM 123 Query: 109 ITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQA 168 + L V G G + +++ A +IA G CA G + Sbjct: 124 VNTPRYADALIVMGVMTPGM---------KEALDRAYEAMPEPKLVIAMGACAVTGGIMG 174 Query: 169 ARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGR 222 P + +K +++ GCPP P + A + + R D R Sbjct: 175 ENP----------LDREKYNVEIAGCPPSPYTLIAALNAAMKDKRKADYFESKR 218 >UniRef50_B0SFT5 NADH-quinone oxidoreductase subunit B n=13 Tax=cellular organisms RepID=NUOB_LEPBA Length = 186 Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 42/122 (34%), Gaps = 15/122 (12%) Query: 87 LDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKR 146 ++Y T A A E ++ V G P + ++ Sbjct: 47 IEYMST-ACADYDIARFGAERPSFSPRQADMILVLGTITYKMA---------PVLRQIYD 96 Query: 147 AAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIIT 206 A +I+ G CAS G + +D+++ + VPGCPP P+ + + Sbjct: 97 QLAEPKFVISVGACASSGGMFHTYG---VLQGVDRILPVD--VYVPGCPPRPEAILDALV 151 Query: 207 YM 208 + Sbjct: 152 KL 153 >UniRef50_D2R5G9 NADH-quinone oxidoreductase, B subunit n=2 Tax=Planctomycetaceae RepID=D2R5G9_9PLAN Length = 192 Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 53/178 (29%), Gaps = 35/178 (19%) Query: 31 SLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYD 90 ++ L + L N R +W CC + + Sbjct: 2 AIDLPENVMVTKLDELANWCRKNSLWPMPFATACCGIELMATG----------------- 44 Query: 91 DTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAG 150 A+ A E ++ V G + P ++++ + Sbjct: 45 ----ASRHDLARFGAEVFRFSPRQCDLMIVAGRVVMKM---------LPVLQRIWQQMHE 91 Query: 151 ASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYM 208 I+ G CAS G V ID+ I + VPGCPP P+ ++ I + Sbjct: 92 PKWCISMGACASTGGVF---DTYAVVQGIDRFIPVD--MYVPGCPPRPEQLTQAIIDL 144 >UniRef50_C7DI98 NADH-quinone oxidoreductase, B subunit n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DI98_9EURY Length = 206 Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 27/191 (14%), Positives = 55/191 (28%), Gaps = 35/191 (18%) Query: 19 RSFLKYCSLAATSLGLG-AGMAPKIAWALENKPRIPVVWIHGLECTCCTESFIRSAHPLA 77 + LK ++ L + + ++ + R +W CC + Sbjct: 22 QDSLKKRKTPTNTMFLRLSDFSKAVSNGVVKWSRSNSMWPMLFGLACCAIELMDFGAARI 81 Query: 78 KDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSG 137 + ++ V G Sbjct: 82 DAERKGYLLFR---------------------GTPRQCDVMIVAGWVTKSM--------- 111 Query: 138 RPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPI 197 P +++L A ++A+G CA+ G N ID+V+ + + GCPP Sbjct: 112 VPRVKRLYEQMASPKYVVAYGECATAGGPWYESYNI--VKGIDQVLPVD-VYAI-GCPPK 167 Query: 198 PDVMSAIITYM 208 P+ + A + + Sbjct: 168 PENLFAALMKL 178 >UniRef50_Q2T5T7 Formate hydrogenlyase subunit 7 n=21 Tax=Bacteria RepID=Q2T5T7_BURTA Length = 174 Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 24/153 (15%), Positives = 41/153 (26%), Gaps = 35/153 (22%) Query: 57 IHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKY 116 I C C +P E + + Sbjct: 49 IDAGSCNGCELELNALGNP----------------------YYNIEGLGIKFVASPRHAD 86 Query: 117 ILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQA 176 +L + G L R + A ++A G CA G V A + Sbjct: 87 MLLITGPLTLNM---------RDAVRLAYDATPAPKLVVAAGDCACTGGVFA--GSYAVC 135 Query: 177 TPIDKVITDKPIIKVPGCPPIPDVMSAIITYMV 209 P++ ++ + + GCPP P + I + Sbjct: 136 GPVETLVPVD--VAIAGCPPRPIDLLRGIRGAL 166 >UniRef50_O75251 NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial n=638 Tax=cellular organisms RepID=NDUS7_HUMAN Length = 213 Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 38/115 (33%), Gaps = 13/115 (11%) Query: 94 MAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASA 153 MAA + ++ V G P + K+ Sbjct: 96 MAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMA---------PALRKVYDQMPEPRY 146 Query: 154 IIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYM 208 +++ G+CA+ G + + D+++ I +PGCPP + + I + Sbjct: 147 VVSMGSCANGGGYY--HYSYSVVRGCDRIVPVD--IYIPGCPPTAEALLYGILQL 197 >UniRef50_C9RJJ6 NADH-quinone oxidoreductase, B subunit n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RJJ6_FIBSS Length = 211 Score = 72.5 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 64/223 (28%), Gaps = 46/223 (20%) Query: 46 LENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVF 105 L N R +W CC F+ + LS I +Y Sbjct: 18 LVNWGRSNSLWPFPYGTACCAIEFMSTEVGRYD---LSRIGSEY---------------- 58 Query: 106 EDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGC 165 + +L V G + P ++++ A +IA G CAS G Sbjct: 59 --VRFTPRQSDVLLVAGTITYKQA---------PILKRIYEQMAEPRWVIAMGACASSGG 107 Query: 166 VQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRP-- 223 ID +I + + GCPP P+ + + + + Sbjct: 108 F---YDCYCTVPGIDHIIPVD--VYIGGCPPRPEAFFDAMFDLQKKVKDESFMKQRAESV 162 Query: 224 ---------LMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARK 257 +R C R D +F++ ++ +K Sbjct: 163 KEQLEMIKVKTAEAKREAAACAREKVVDIKDFMKEKQENLVKK 205 >UniRef50_A1RZ48 NADH-quinone oxidoreductase, B subunit n=3 Tax=Thermoprotei RepID=A1RZ48_THEPD Length = 171 Score = 72.5 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 24/176 (13%), Positives = 46/176 (26%), Gaps = 42/176 (23%) Query: 36 AGMAPKIAWALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMA 95 + +L + +W +CC F ++ P + Sbjct: 23 WLVEKTPIRSLRDWAITFSLWPVHFTTSCCGAEFAATSAPRFDAERFGFLPF-------- 74 Query: 96 AAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAII 155 ++ +EG + + +I Sbjct: 75 --------------NSPRQTNLMVIEGTLTKKMGEAA---------KIVYDQMPWPKFVI 111 Query: 156 AWGTCASWGCVQAARPN---PTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYM 208 A G CA G + N P P++ +PGCPP P+ ++ I + Sbjct: 112 AMGACAIDGGLFYNSYNIVRPKDILPVEYF--------IPGCPPRPEAVAQAIIML 159 >UniRef50_B3QY47 NADH-quinone oxidoreductase subunit B 2 n=8 Tax=Bacteria RepID=NUOB2_CHLT3 Length = 195 Score = 72.1 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 50/181 (27%), Gaps = 34/181 (18%) Query: 42 IAWALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQA 101 A + N R+ +W G CC + + A+ Sbjct: 17 AAENVLNWARLSSLWPMGFGLACCAIEMMATN----------------------ASNYDL 54 Query: 102 EEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCA 161 E + ++ V G +L +++ G+C+ Sbjct: 55 ERFGIFPRSSPRQSDLMIVAGTVTFKMAERVV---------RLYEQMPEPRYVLSMGSCS 105 Query: 162 SWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMG 221 + G +D++I + VPGCPP P+ + + + R Sbjct: 106 NCGG-PYWEHGYHVVKGVDRIIPVD--VYVPGCPPRPEALIGGLMKVQELIREEKFAGDR 162 Query: 222 R 222 R Sbjct: 163 R 163 >UniRef50_Q492H7 NADH-quinone oxidoreductase subunit B n=225 Tax=Bacteria RepID=NUOB_BLOPB Length = 236 Score = 72.1 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 27/165 (16%), Positives = 48/165 (29%), Gaps = 35/165 (21%) Query: 44 WALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEE 103 + N R +W + +CC + A A Sbjct: 48 HKIVNWGRGNSLWPYNFGLSCCYVEMTTAFT---------------------AIHDVARF 86 Query: 104 VFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASW 163 E + + + G P L P I++L +I+ G CA+ Sbjct: 87 GSEVLRASPRQADFMVIAGTPFLKM---------VPVIQRLYDQMLEPKWVISMGACANS 137 Query: 164 GCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYM 208 G + +DK + + +PGCPP P+ + + Sbjct: 138 GG---MYDIYSVVQGVDKFLPVD--LYIPGCPPRPEAYIQGLLLL 177 >UniRef50_A8MBS9 NADH-quinone oxidoreductase, B subunit n=5 Tax=Thermoproteaceae RepID=A8MBS9_CALMQ Length = 374 Score = 72.1 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 55/193 (28%), Gaps = 39/193 (20%) Query: 31 SLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYD 90 S+G+ + P + K I + C F ++ P Sbjct: 15 SIGMDIKLLPDSLASWGTKFSIWPAHLVTACCG---VEFAHASAP--------------- 56 Query: 91 DTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAG 150 G AE I + +EG ++ Sbjct: 57 -------GYDAERWGFLPIFGPRQTNSIVIEGTVTRKMAR---------IVKTAYEQMPY 100 Query: 151 ASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVT 210 +IA G+CA G V + +++++ + GCPP P+ + I + + Sbjct: 101 PKFVIAMGSCAMEGGVFWNSYH---VVRVNEIVPVDAWVM--GCPPTPEAVIRAIRMVQS 155 Query: 211 FDRLPDVDRMGRP 223 +V RP Sbjct: 156 KIEGKEVKPNIRP 168 >UniRef50_D2R6Y4 NADH-quinone oxidoreductase, B subunit n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R6Y4_9PLAN Length = 227 Score = 71.7 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 41/166 (24%), Gaps = 33/166 (19%) Query: 43 AWALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAE 102 N R +W CC + + M G A Sbjct: 39 VEQAINWARQSSIWPMTFGLACCAIEMMAAGASRYD---------------MDRFGAGAF 83 Query: 103 EVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCAS 162 ++ V G + +L +IA G C Sbjct: 84 RA------TPRQADLMIVAGTVTYKMA---------SRVRRLYNMMPDPKFVIAMGACTV 128 Query: 163 WGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYM 208 G + +D V+ + +PGCPP P+ + + + Sbjct: 129 GGG-PYFKWGYHVVKGVDLVVPVD--VYIPGCPPRPEALLEGLMRI 171 >UniRef50_B1KJU9 NADH-quinone oxidoreductase subunit B n=8 Tax=Proteobacteria RepID=NUOB_SHEWM Length = 213 Score = 70.9 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 41/119 (34%), Gaps = 15/119 (12%) Query: 106 EDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGC 165 E I ++ + G L P I+ L +I G+CA+ G Sbjct: 73 EVIRATPREADLIVISGTVFLKMA---------PVIKHLYDQMLEPKWVICMGSCANSGG 123 Query: 166 VQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPL 224 + D+ + + VPGCPP P+ + +T ++ R RPL Sbjct: 124 ---MYDVYSVVQGADRFLPID--LYVPGCPPRPEALMYGLT-LLQEAIKDGAPRQARPL 176 >UniRef50_B0R3U2 NADH dehydrogenase-like complex subunit B n=11 Tax=Halobacteriaceae RepID=B0R3U2_HALS3 Length = 235 Score = 70.9 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 16/99 (16%), Positives = 33/99 (33%), Gaps = 13/99 (13%) Query: 110 TQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAA 169 ++ V G P ++++ ++ G C++ G Sbjct: 97 ASPRQADVMIVPGTIVSKFA---------PRMKRVYDQMPEPKFVVNMGNCSTSGGPFQE 147 Query: 170 RPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYM 208 N ++VI I +PGCPP P+ + + + Sbjct: 148 GYNV--VKGAEEVIPVD--IHIPGCPPRPEALVYGVAKL 182 >UniRef50_C1VB41 NADH dehydrogenase subunit B n=1 Tax=Halogeometricum borinquense DSM 11551 RepID=C1VB41_9EURY Length = 236 Score = 70.5 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 13/99 (13%) Query: 110 TQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAA 169 ++ V G P ++++ ++ G+C G Sbjct: 98 ASPRQADVIIVPGTIVSKFA---------PRMKRVYDQMPEPKFVVGMGSCTVSGGPFQE 148 Query: 170 RPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYM 208 N ++VI I VPGCPP P+ + + + Sbjct: 149 GYNV--IKGAEEVIPVD--IHVPGCPPRPEALIYGVAKL 183 >UniRef50_D2PJN5 NADH ubiquinone oxidoreductase, 20 kDa subunit n=9 Tax=Sulfolobus RepID=D2PJN5_SULIS Length = 201 Score = 70.5 bits (171), Expect = 9e-11, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 45/160 (28%), Gaps = 43/160 (26%) Query: 49 KPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDI 108 K + I C C + P ++ S+ + +T Sbjct: 82 KRSFYLYPIDSGTCGGCNMELKLISSPEYD---MTRFSIFFTNT---------------- 122 Query: 109 ITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQA 168 L V G + ++K A +I G CA G + Sbjct: 123 ---PRHADALVVMGVMTEKM---------KEVLKKAYEAMPEPKVVILLGACAISGGI-- 168 Query: 169 ARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYM 208 I + + + ++++ GCPP P + + + Sbjct: 169 ----------IGEGVPLEAVVEISGCPPNPFTILEALMKV 198 >UniRef50_B5E8B5 NADH ubiquinone oxidoreductase 20 kDa subunit n=13 Tax=Bacteria RepID=B5E8B5_GEOBB Length = 332 Score = 70.5 bits (171), Expect = 9e-11, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 43/162 (26%), Gaps = 34/162 (20%) Query: 45 ALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEV 104 + + I+ C C A E++ Sbjct: 6 KETPAEPVRLFRINTGSCNGCDVELA---------------------VTAAVDEFDVEQL 44 Query: 105 FEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWG 164 + + IL + G R +L A +A G C G Sbjct: 45 GCRYTEEPHEADILLITGP---------LTVRARNEALRLYAEAPETKVTVAVGVCPVSG 95 Query: 165 CVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIIT 206 V R + P+ + + + VPGCPP P + A I Sbjct: 96 GVF--RDSYAVDGPVQRYLPVD--LNVPGCPPRPQALLAGIA 133 >UniRef50_C1ZCK3 NADH dehydrogenase subunit B n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZCK3_PLALI Length = 225 Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 35/119 (29%), Gaps = 16/119 (13%) Query: 94 MAAAGTQAEEVFE----DIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAA 149 M A G ++ ++ V G I +L Sbjct: 67 MMATGMSKYDLDRFGSGAFRATPRQADLMIVAGTVTYKMA---------SRIRRLYDQMP 117 Query: 150 GASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYM 208 +IA G C G + +D V+ + +PGCPP P+ + + + Sbjct: 118 DPKYVIAMGACTIGGG-PYFKYGYHVVKGVDLVVPVD--VYIPGCPPRPEALLEGVMRI 173 >UniRef50_A5FW47 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5FW47_ACICJ Length = 264 Score = 69.8 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 22/162 (13%), Positives = 43/162 (26%), Gaps = 36/162 (22%) Query: 49 KPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDI 108 + + V + C C +P L + Sbjct: 125 RRSLHVRHVDAGSCNGCESELQALNNPFYNLHRLGIF----------------------F 162 Query: 109 ITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQA 168 +L V G + + A ++A GTCA G + Sbjct: 163 TPSPRFADLLLVTGPVTRAMLEP---------LRRTWEAMPAPRWVMASGTCAVSGGIAP 213 Query: 169 ARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVT 210 P + +++ + + +PGCPP P + + + Sbjct: 214 GGPCLS---GLEEALPVD--LYLPGCPPNPAAIIEALLMFLG 250 >UniRef50_O21272 NADH-ubiquinone oxidoreductase 20 kDa subunit n=5 Tax=Eukaryota RepID=NDUS7_RECAM Length = 182 Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 18/115 (15%), Positives = 39/115 (33%), Gaps = 13/115 (11%) Query: 94 MAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASA 153 AA+ + ++ V G P + K+ + Sbjct: 65 SAASRYDLDRFGIIFRPSPRQSDVMIVAGTLTNKMA---------PALRKVYDQMSEPRW 115 Query: 154 IIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYM 208 +++ G+CA+ G + + D+++ I VPGCPP + + + + Sbjct: 116 VVSMGSCANGGGYY--HYSYSVVRGCDRIVPVD--IYVPGCPPTAEALLYGLLQL 166 >UniRef50_A6DAC3 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DAC3_9PROT Length = 140 Score = 69.0 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 23/164 (14%), Positives = 50/164 (30%), Gaps = 34/164 (20%) Query: 46 LENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVF 105 +E + I+ C C S ++ +++ Sbjct: 1 MEMSSNPKIFRINTGSCNGCDVEIAASV---------------------MSSRFDLQKLG 39 Query: 106 EDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGC 165 + I I + G + PF++++ + +I+ GTC+ Sbjct: 40 CEYIETSEDADIFMITGPV---------TARSLPFLKEVIKNHKKPYVVISLGTCSVTCG 90 Query: 166 VQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMV 209 + R + P+D + + V GCPP P + + + Sbjct: 91 IF--RDSYPILGPVDSYVNVD--VNVAGCPPRPQAILEGVKTAI 130 >UniRef50_A9G9S9 NADH-quinone oxidoreductase subunit B 2 n=2 Tax=Myxococcales RepID=NUOB2_SORC5 Length = 182 Score = 69.0 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 25/178 (14%), Positives = 52/178 (29%), Gaps = 35/178 (19%) Query: 31 SLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYD 90 G+ + L N R VW CC +++ P Sbjct: 22 GGGVITTSVDQTVNWLLNWGRSNSVWYMLFGLACCAIELMQTGGPR-------------- 67 Query: 91 DTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAG 150 E + + G +++L + Sbjct: 68 --------GDLERFGAAPRPSPRSSDLFIIAGTLTYKMA---------TRVKRLYDQMSE 110 Query: 151 ASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYM 208 +I+ G+C++ G + + + +D++I + VPGCPP P+ + + + Sbjct: 111 PRFVISMGSCSNCGGLF--QYAYSVCKGVDQIIPVD--VYVPGCPPRPEALLEGLLKI 164 >UniRef50_Q39SF9 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Geobacter metallireducens GS-15 RepID=Q39SF9_GEOMG Length = 244 Score = 67.8 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 34/118 (28%), Gaps = 13/118 (11%) Query: 93 LMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGAS 152 +++ G + L V G + A Sbjct: 136 VLSTIGWDLGRFGIQFVASPRHADGLWVTGPVTEHMAKALLTT---------YEAIPDPK 186 Query: 153 AIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVT 210 ++A G CA G P +D ++ + +PGCPP P + + ++ Sbjct: 187 IVVACGACAINGGPYIDTPQV--CNGVDSIVPVD--LYIPGCPPHPATILDGLLRILN 240 >UniRef50_A5TDF9 NADH-quinone oxidoreductase, B subunit n=2 Tax=pseudomallei group RepID=A5TDF9_BURMA Length = 293 Score = 67.8 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 48/136 (35%), Gaps = 17/136 (12%) Query: 93 LMAAAG--TQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAG 150 +M AAG + ++ V G P + ++ A Sbjct: 170 MMHAAGARYDMDRFGMIPRASPRQCDLMIVAGTLTNKMA---------PAMRRVYDQMAE 220 Query: 151 ASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVT 210 +++ G+CA+ G + + D+++ + VPGCPP + + + + Sbjct: 221 PRYVVSMGSCANGGGYY--HYSYSVVRGCDRIVPVD--VYVPGCPPTAEALVYGLMQL-- 274 Query: 211 FDRLPDVDRMGRPLMF 226 ++ + RP +F Sbjct: 275 QRKVAERSTHSRPKLF 290 >UniRef50_B5ZJ00 NADH ubiquinone oxidoreductase 20 kDa subunit n=2 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=B5ZJ00_GLUDA Length = 166 Score = 67.8 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 40/163 (24%), Gaps = 35/163 (21%) Query: 47 ENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFE 106 + V + C C A Sbjct: 20 TGARPLAVFHVETGGCEGCAMEVAALD----------------------GAAYGLPATGI 57 Query: 107 DIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCV 166 + +L V G P +E A A++A G CA G Sbjct: 58 AFVATPRLAEVLLVTGPLTRAMA---------PVLEAAWHAMPEPRALVAVGACAIDGGP 108 Query: 167 QAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMV 209 N ++ T + VPGCPP P + A + ++ Sbjct: 109 F--PENYAVLGGLEGRATLD--MTVPGCPPSPAAILAGLARVL 147 >UniRef50_Q0BSK3 NADH-quinone oxidoreductase subunit B n=31 Tax=cellular organisms RepID=NUOB_GRABC Length = 194 Score = 67.4 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 25/165 (15%), Positives = 46/165 (27%), Gaps = 35/165 (21%) Query: 44 WALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEE 103 L N R +W CC I + P +I Sbjct: 52 DKLVNWARTGSLWPMTFGLACCAVEMIHAYMPRYDLDRFGVIP----------------- 94 Query: 104 VFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASW 163 ++ V G P + ++ +I+ G+CA+ Sbjct: 95 -----RASPRQSDVMIVAGTLTNKMA---------PALRRVYDQMPEPRWVISMGSCANG 140 Query: 164 GCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYM 208 G + + D+++ + VPGCPP + + I + Sbjct: 141 GGYY--HYSYSVVRGCDRIVPVD--VYVPGCPPTAEALVYGIMQL 181 >UniRef50_A0B811 F420H2 dehydrogenase subunit B n=6 Tax=Archaea RepID=A0B811_METTP Length = 190 Score = 67.4 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 25/161 (15%), Positives = 35/161 (21%), Gaps = 35/161 (21%) Query: 48 NKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFED 107 N R +W CC + P +I Sbjct: 52 NWGRKNSLWFLMQPMGCCGVEMLVFGCPHYDCDRFGIIP--------------------- 90 Query: 108 IITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQ 167 ++ + G P I+ L IA G CA G Sbjct: 91 -RATPRQADVMIISGYITRKY---------LPAIKNLWEQMLEPKWCIAVGECAISGGPF 140 Query: 168 AARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYM 208 N + VPGCPP P+ + Sbjct: 141 YDSYNI--IQNTSDFFPID--VYVPGCPPRPEQFIKGFVEL 177 >UniRef50_B2V8R1 NADH ubiquinone oxidoreductase 20 kDa subunit n=3 Tax=Aquificales RepID=B2V8R1_SULSY Length = 173 Score = 67.1 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 20/156 (12%), Positives = 37/156 (23%), Gaps = 35/156 (22%) Query: 57 IHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKY 116 + C C ++P E + Sbjct: 49 VDSGSCNACEYEISALSNP----------------------YYDIERFGVKFVASPKHAD 86 Query: 117 ILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQA 176 + + G + E + IIA G CA G + + Sbjct: 87 AIMITGCLTRNM-----YEAVMKAYENV----PNPKFIIAVGDCALDGGTF--KGSYAVM 135 Query: 177 TPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFD 212 I + I + GCPP P + + + ++ Sbjct: 136 DGIKDKLPID--IWIKGCPPEPIDIISGLLILLNKK 169 >UniRef50_A1SQ82 NADH ubiquinone oxidoreductase, 20 kDa subunit n=15 Tax=Actinomycetales RepID=A1SQ82_NOCSJ Length = 162 Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 22/159 (13%), Positives = 42/159 (26%), Gaps = 35/159 (22%) Query: 47 ENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFE 106 E + + + C C + P+ AE Sbjct: 33 ELAGSVQIRHVDAGSCNGCEIEVGGAFGPV----------------------YDAERYGA 70 Query: 107 DIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCV 166 ++ ++ V G + + A ++A G CA Sbjct: 71 RLVASPRHADVVLVTGVVTHNMLEP---------LRRTVEATPRPRLVLAVGDCARNCG- 120 Query: 167 QAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAII 205 A + A + + ++VPGCPP P + + Sbjct: 121 -AFKGGYGVAGAVHDAVDVD--LEVPGCPPEPAAIVDAL 156 >UniRef50_A8A9X3 NADH-quinone oxidoreductase, B subunit n=1 Tax=Ignicoccus hospitalis KIN4/I RepID=A8A9X3_IGNH4 Length = 207 Score = 66.3 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 62/201 (30%), Gaps = 46/201 (22%) Query: 42 IAWALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQA 101 + AL R +W+ L CC +++ A A Sbjct: 20 VKEAL-KWSRRNSLWLLHLGIMCCAIEMMQA----------------------AFAFHDF 56 Query: 102 EEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCA 161 E + ++ + G + +L G +I G CA Sbjct: 57 ERLGVLARATPRQVDVILINGPVNRKLAER---------LRRLFMQTPGPRFVIVMGECA 107 Query: 162 SWGCVQAARPNPTQATPIDKVITDKP--------IIKVPGCPPIPDVMSAIITYMVTFDR 213 G + + I +VI P ++ + GCPP P+ + I + + Sbjct: 108 INGG-PWWQSDYV-LDGIHEVIESLPEEYRKDVHVVNLAGCPPRPEGLLRAI--LKMEEL 163 Query: 214 LPDVDRMGRPLMFYGQRIHDK 234 + + D PL Y R+HD+ Sbjct: 164 INEGDLARAPLTRY--RLHDE 182 >UniRef50_A4WJL4 NADH-quinone oxidoreductase, B subunit n=6 Tax=Thermoproteaceae RepID=A4WJL4_PYRAR Length = 196 Score = 65.5 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 24/175 (13%), Positives = 44/175 (25%), Gaps = 39/175 (22%) Query: 44 WALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEE 103 + N +W L +CC ++ P G AE Sbjct: 23 EKIFNWGVRWSLWPVHLVTSCCGVEVAHTSGP----------------------GFDAER 60 Query: 104 VFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASW 163 ++ VEG ++ + ++A G CA Sbjct: 61 WGVLPFHTMRQSNVILVEGTITRKMAK---------VLKMVYEQMPEPKFVLAMGACAVR 111 Query: 164 GCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYM---VTFDRLP 215 G + + Q + + GCPP P+ + + + P Sbjct: 112 GGLFWNSYHVVQVD-----TVVPVDVYIAGCPPTPEAVVRAFIMLHNKIKGKPGP 161 >UniRef50_B9SD17 NADH-ubiquinone oxidoreductase I subunit j, putative n=1 Tax=Ricinus communis RepID=B9SD17_RICCO Length = 188 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 3/70 (4%) Query: 139 PFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIP 198 P + +L +IA G C G + + + + +DK+I + GCPP P Sbjct: 3 PSLVRLYEQIPEPKYVIAMGACTITGGMFST-DSYSTIRGVDKLIPVDA--YLSGCPPKP 59 Query: 199 DVMSAIITYM 208 + + IT + Sbjct: 60 EAVIDAITKL 69 >UniRef50_B9L626 NADH-ubiquinone oxidoreductase 20 kDa subunit n=3 Tax=Epsilonproteobacteria RepID=B9L626_NAUPA Length = 157 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 20/163 (12%), Positives = 43/163 (26%), Gaps = 40/163 (24%) Query: 47 ENKPRIPVVWIHGLECTCC-TESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVF 105 +V C+ C + + + P I Sbjct: 11 ARSKSPWIVHF----CSGCCSLEMLAAMGPRYDWERYGYI-------------------- 46 Query: 106 EDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGC 165 + I+ + G P + + ++A G CA G Sbjct: 47 --MTPTPRQADIMFITGLVSKK---------ILPALLRTYEQMPEPRYVVAIGACAYDGG 95 Query: 166 VQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYM 208 + + + +++ + V GCPP P+ + A + + Sbjct: 96 PY--NDSVSVIKNMTEILPAD--VFVAGCPPRPEAIIAGLEEL 134 >UniRef50_A7I7C9 NADH ubiquinone oxidoreductase, 20 kDa subunit n=9 Tax=cellular organisms RepID=A7I7C9_METB6 Length = 172 Score = 64.7 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 33/116 (28%), Gaps = 13/116 (11%) Query: 95 AAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAI 154 + A E + +L V G +K A + Sbjct: 64 SNAYYDVERFGISFVASPRHADVLLVTGAITCNMA---------IAAQKTYDAMPSPKFV 114 Query: 155 IAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVT 210 +A G A G + + D + +K+PG PP P + + ++ Sbjct: 115 VAVGDDACDGGIY--KGTYAVLGGADAIFPVD--LKIPGNPPAPIQILTGLLALMR 166 >UniRef50_A4YGN5 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Metallosphaera sedula DSM 5348 RepID=A4YGN5_METS5 Length = 203 Score = 64.7 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 27/180 (15%), Positives = 43/180 (23%), Gaps = 44/180 (24%) Query: 35 GAGMAPKIAWA-LENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTL 93 G + P++ + + K + + C C + P Sbjct: 66 GETLTPRVERSDVTFKRSFYLYPLDAGSCGGCNLELRLISSP------------------ 107 Query: 94 MAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASA 153 L + GN + I + Sbjct: 108 ----QYDMTRFGIFFTNTPKHADALLIMGNLGKRMEE---------VIRRAYDVIPSPKL 154 Query: 154 IIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDR 213 +I GTCA G V P+ + VPGCPP P + + DR Sbjct: 155 VILLGTCAISGGVTGIPPDIRGD------------VIVPGCPPTPASILDALIKAKGGDR 202 >UniRef50_Q64DY8 F420H2-quinone oxidoreductase 45 kD subunit n=8 Tax=Archaea RepID=Q64DY8_9ARCH Length = 788 Score = 64.4 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 33/116 (28%), Gaps = 20/116 (17%) Query: 96 AAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAII 155 A G E + + + VEG + + + Sbjct: 49 ACGYDMERLGTLNMGISRQANFIMVEGTITRKMAR---------ALRIVWEQMPDPKFVN 99 Query: 156 AWGTCASWGCVQAARPN---PTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYM 208 GTC G + N P+ P+D +PGCP P+ + + + Sbjct: 100 VIGTCGQRGGIFWNSYNITRPSDIVPVDFF--------IPGCPITPESLLRGVRAV 147 >UniRef50_A5FW77 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5FW77_ACICJ Length = 164 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 47/174 (27%), Gaps = 35/174 (20%) Query: 50 PRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDII 109 + V + C C MAA G ++ Sbjct: 24 RSLAVRHVDAGSCGGCEIEIAAC---------------RRLRGGMAAHGIA-------MV 61 Query: 110 TQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAA 169 IL V G + + + L A ++A G CA G V Sbjct: 62 EDLRAADILLVTG--------VATRNLAEAVRKSLAGMAP-PRFVVAAGDCALDGGVF-- 110 Query: 170 RPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRP 223 + P + VI +I GCPP P + A + +V + P Sbjct: 111 KGVPAVLGGVQAVIPVDLLIA--GCPPAPRQILAGLVALVEANAREPRRARVEP 162 >UniRef50_Q58136 Uncharacterized protein MJ0726 n=3 Tax=Methanocaldococcus RepID=Y726_METJA Length = 216 Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 44/121 (36%), Gaps = 12/121 (9%) Query: 96 AAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAII 155 + G + + + Q K I+ V G L ++ ++K+ + +I Sbjct: 6 SCGKIIKNIEKKYYNQLKEKDIVLVGGAVNLDDEEE---------VKKIMEIRKNSKVLI 56 Query: 156 AWGTCASWGCVQAARPNPTQATPIDKVITDKPI---IKVPGCPPIPDVMSAIITYMVTFD 212 A G+CA G Q P V + + GCPP + + I+ ++ D Sbjct: 57 AVGSCAVSGGFQRMLIGLENGFPQRFVRIGDVVKVDYAIIGCPPDEEEVERIVKAVIEKD 116 Query: 213 R 213 + Sbjct: 117 K 117 >UniRef50_Q5FU78 Putative uncharacterized protein n=1 Tax=Gluconobacter oxydans RepID=Q5FU78_GLUOX Length = 161 Score = 61.3 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 23/162 (14%), Positives = 45/162 (27%), Gaps = 37/162 (22%) Query: 48 NKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFED 107 + I + + C C + + E+ Sbjct: 33 RERPIGLYVLEAGGCEGCFMEI----------------------ESLNGSAFALEQAGFV 70 Query: 108 IITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQ 167 ++ L + G ++++ RA ++IA G CA G Sbjct: 71 CVSDPADADWLLLTGAVTR---------VCAEMVDRVWRAMPPGRSLIAVGACAVDGG-- 119 Query: 168 AARPNPTQATPIDKVITDKPI-IKVPGCPPIPDVMSAIITYM 208 P P + + P+ + GCPP PD + + + Sbjct: 120 ---PFPAGYATLGGLEALTPVRRSIAGCPPSPDDILRALQEL 158 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.309 0.129 0.394 Lambda K H 0.267 0.0396 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,121,565,014 Number of Sequences: 3077464 Number of extensions: 86615264 Number of successful extensions: 234576 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 308 Number of HSP's successfully gapped in prelim test: 268 Number of HSP's that attempted gapping in prelim test: 232598 Number of HSP's gapped (non-prelim): 668 length of query: 372 length of database: 1,040,396,356 effective HSP length: 130 effective length of query: 242 effective length of database: 640,326,036 effective search space: 154958900712 effective search space used: 154958900712 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 94 (40.9 bits)