BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (1160 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q8X8X5 DNA polymerase III subunit alpha n=288 Tax=cellu... 2380 0.0 UniRef50_P52022 DNA polymerase III subunit alpha n=118 Tax=Gamma... 1874 0.0 UniRef50_Q8K9S3 DNA polymerase III subunit alpha n=4 Tax=Enterob... 1392 0.0 UniRef50_Q9HXZ1 DNA polymerase III subunit alpha n=46 Tax=Gammap... 1371 0.0 UniRef50_C5BQZ9 DNA polymerase III, alpha subunit n=10 Tax=Gamma... 1353 0.0 UniRef50_D0SVP0 DNA polymerase subunit III n=3 Tax=Gammaproteoba... 1114 0.0 UniRef50_C5V5V8 DNA polymerase III, alpha subunit n=2 Tax=Gallio... 1113 0.0 UniRef50_B5EQR5 DNA polymerase III, alpha subunit n=4 Tax=Bacter... 1095 0.0 UniRef50_C8ND72 DNA polymerase III, alpha subunit n=1 Tax=Cardio... 1078 0.0 UniRef50_Q6FAL5 DNA polymerase III, alpha chain n=16 Tax=Acineto... 1071 0.0 UniRef50_Q87EY0 DNA polymerase III subunit alpha n=22 Tax=Gammap... 1058 0.0 UniRef50_Q4FSI0 DNA polymerase III, alpha subunit n=6 Tax=Bacter... 1058 0.0 UniRef50_Q9JVX8 DNA polymerase III subunit alpha n=201 Tax=cellu... 1048 0.0 UniRef50_A5EV47 DNA polymerase III, alpha subunit n=1 Tax=Dichel... 1047 0.0 UniRef50_B1XVK6 DNA polymerase III, alpha subunit n=21 Tax=Burkh... 1001 0.0 UniRef50_A1AX67 DNA polymerase III, alpha subunit n=2 Tax=sulfur... 983 0.0 UniRef50_D1KB28 DNA polymerase III, alpha subunit n=1 Tax=uncult... 957 0.0 UniRef50_A0LCM6 DNA polymerase III, alpha subunit n=1 Tax=Magnet... 950 0.0 UniRef50_A1AQQ6 DNA polymerase III, alpha subunit n=12 Tax=Delta... 926 0.0 UniRef50_B5E8T0 DNA polymerase III, alpha subunit n=6 Tax=Deltap... 920 0.0 UniRef50_B0TZK7 DNA-directed DNA polymerase n=16 Tax=Francisella... 920 0.0 UniRef50_Q0F0W7 Putative uncharacterized protein n=2 Tax=root Re... 906 0.0 UniRef50_Q6Q8S4 Predicted DNA polymerase III, alpha subunit n=1 ... 893 0.0 UniRef50_D0LJI6 DNA polymerase III, alpha subunit n=1 Tax=Halian... 892 0.0 UniRef50_C1SP26 DNA polymerase III, alpha subunit n=1 Tax=Denitr... 885 0.0 UniRef50_Q1D042 DNA polymerase III, alpha subunit n=1 Tax=Myxoco... 883 0.0 UniRef50_Q1MRR3 DNA polymerase III, alpha subunit n=3 Tax=Desulf... 872 0.0 UniRef50_Q2Z0E7 DNA polymerase III, alpha subunit n=1 Tax=uncult... 867 0.0 UniRef50_C6BS12 DNA polymerase III, alpha subunit n=4 Tax=Desulf... 866 0.0 UniRef50_Q0C1C2 DNA polymerase III, alpha subunit n=2 Tax=Alphap... 856 0.0 UniRef50_A3EVF9 DNA polymerase III, alpha subunit n=3 Tax=Leptos... 850 0.0 UniRef50_B5YIK8 DNA polymerase III alpha subunit n=1 Tax=Thermod... 848 0.0 UniRef50_A9GWC5 DNA polymerase III, alpha subunit n=1 Tax=Sorang... 845 0.0 UniRef50_C0QG07 DnaE n=1 Tax=Desulfobacterium autotrophicum HRM2... 842 0.0 UniRef50_B9JDK3 DNA polymerase III alpha subunit protein n=54 Ta... 841 0.0 UniRef50_Q1PZM1 Similar to DNA polymerase III, alpha subunit n=1... 840 0.0 UniRef50_D1BNX7 DNA polymerase III, alpha subunit n=3 Tax=Veillo... 840 0.0 UniRef50_C9KIR5 DNA polymerase III, alpha subunit n=1 Tax=Mitsuo... 838 0.0 UniRef50_A4J6X6 DNA polymerase III catalytic subunit, DnaE type ... 838 0.0 UniRef50_Q2LTT3 DNA polymerase III alpha subunit n=3 Tax=Deltapr... 838 0.0 UniRef50_A7HG87 DNA polymerase III, alpha subunit n=4 Tax=Anaero... 837 0.0 UniRef50_B6FXS8 Putative uncharacterized protein (Fragment) n=1 ... 833 0.0 UniRef50_C0Z7W1 DNA polymerase III alpha subunit n=1 Tax=Breviba... 831 0.0 UniRef50_B3DUG0 DNA polymerase III, alpha subunit n=1 Tax=Methyl... 827 0.0 UniRef50_Q1IN02 DNA polymerase III, alpha subunit n=2 Tax=Acidob... 824 0.0 UniRef50_B0TI36 DNA polymerase iii alpha subunit, putative n=1 T... 821 0.0 UniRef50_UPI00017463A7 DNA polymerase III, alpha subunit n=1 Tax... 818 0.0 UniRef50_C1F714 DNA polymerase III, alpha subunit n=1 Tax=Acidob... 817 0.0 UniRef50_A6G5Y5 DNA polymerase III, alpha subunit n=1 Tax=Plesio... 813 0.0 UniRef50_B8GWS6 DNA polymerase III subunit alpha n=75 Tax=Alphap... 813 0.0 UniRef50_D2RIQ1 DNA polymerase III, alpha subunit n=3 Tax=Veillo... 810 0.0 UniRef50_B5YEZ7 DNA polymerase III alpha subunit n=2 Tax=Dictyog... 810 0.0 UniRef50_C9XRY5 DNA polymerase III alpha subunit n=38 Tax=Clostr... 809 0.0 UniRef50_Q6MLD4 DnaE protein n=1 Tax=Bdellovibrio bacteriovorus ... 808 0.0 UniRef50_C1DXC6 DNA polymerase III subunit alpha n=3 Tax=Sulfuri... 805 0.0 UniRef50_B9XPL1 DNA polymerase III, alpha subunit n=1 Tax=bacter... 804 0.0 UniRef50_A8ZSF2 DNA polymerase III, alpha subunit n=6 Tax=Deltap... 804 0.0 UniRef50_B8D1J8 DNA polymerase III catalytic subunit, DnaE type ... 800 0.0 UniRef50_D1B9W1 DNA polymerase III, alpha subunit n=3 Tax=Synerg... 799 0.0 UniRef50_D1Y4Y5 DNA polymerase III, alpha subunit n=1 Tax=Pyrami... 798 0.0 UniRef50_Q67RP9 DNA polymerase III alpha subunit n=4 Tax=Clostri... 796 0.0 UniRef50_Q160T2 DNA polymerase III, alpha subunit n=39 Tax=Rhodo... 795 0.0 UniRef50_C6XJW1 DNA polymerase III, alpha subunit n=1 Tax=Hirsch... 795 0.0 UniRef50_O51526 DNA polymerase III subunit alpha n=25 Tax=Borrel... 792 0.0 UniRef50_C5EYF1 DNA polymerase III alpha subunit n=3 Tax=Helicob... 791 0.0 UniRef50_C8WER6 DNA polymerase III, alpha subunit n=10 Tax=Alpha... 791 0.0 UniRef50_B8FTK4 DNA polymerase III, alpha subunit n=2 Tax=Desulf... 776 0.0 UniRef50_Q055U5 DNA-directed DNA polymerase, alpha subunit n=6 T... 775 0.0 UniRef50_C0R3A1 DNA polymerase III, alpha subunit n=9 Tax=Ricket... 773 0.0 UniRef50_B1C7S2 Putative uncharacterized protein n=1 Tax=Anaerof... 771 0.0 UniRef50_Q4FM70 DNA polymerase III alpha subunit n=8 Tax=Candida... 768 0.0 UniRef50_B2TQR7 DNA polymerase III subunit alpha n=23 Tax=Clostr... 768 0.0 UniRef50_Q9ZJF9 DNA polymerase III subunit alpha n=51 Tax=cellul... 768 0.0 UniRef50_A1ZEC3 DNA polymerase III alpha subunit n=2 Tax=Bactero... 767 0.0 UniRef50_B2KB15 DNA polymerase III, alpha subunit n=1 Tax=Elusim... 767 0.0 UniRef50_C6J6J2 DNA polymerase III (Fragment) n=4 Tax=Bacteria R... 765 0.0 UniRef50_B5Y9K9 DNA polymerase III subunit alpha n=1 Tax=Coproth... 762 0.0 UniRef50_Q2GJ87 DNA polymerase III, alpha subunit n=8 Tax=Ricket... 761 0.0 UniRef50_C3WEY7 DNA polymerase III alpha subunit n=1 Tax=Fusobac... 759 0.0 UniRef50_A0PYC7 DNA polimerase III, alpha chain n=22 Tax=Bacteri... 757 0.0 UniRef50_Q9XDH5 DNA polymerase III subunit alpha n=6 Tax=Bacteri... 757 0.0 UniRef50_Q2S3X0 DNA polymerase III, alpha subunit n=1 Tax=Salini... 755 0.0 UniRef50_B2UNA1 DNA polymerase III, alpha subunit n=1 Tax=Akkerm... 754 0.0 UniRef50_B0S231 DNA polymerase III alpha subunit n=3 Tax=Clostri... 754 0.0 UniRef50_Q3AVK2 DNA polymerase III, alpha subunit n=11 Tax=Cyano... 753 0.0 UniRef50_B5VUX8 DNA polymerase III, alpha subunit n=2 Tax=Arthro... 752 0.0 UniRef50_B9L5T8 DNA polymerase III alpha subunit n=1 Tax=Nautili... 751 0.0 UniRef50_A5GTL9 DNA polymerase III alpha subunit n=20 Tax=cellul... 751 0.0 UniRef50_C6JJK2 DNA-directed DNA polymerase III alpha subunit n=... 748 0.0 UniRef50_C1A6B9 DNA polymerase III alpha subunit n=1 Tax=Gemmati... 748 0.0 UniRef50_C4Z382 DNA polymerase III subunit alpha n=1 Tax=Eubacte... 748 0.0 UniRef50_B1GZ26 DNA polymerase III subunit alpha n=2 Tax=cellula... 748 0.0 UniRef50_O67125 DNA polymerase III subunit alpha n=4 Tax=Aquific... 746 0.0 UniRef50_A0YQD0 DNA polymerase III subunit alpha n=1 Tax=Lyngbya... 744 0.0 UniRef50_C8PHM9 DNA polymerase III, alpha subunit n=1 Tax=Campyl... 743 0.0 UniRef50_C7H0A9 DNA polymerase III, subunit alpha n=1 Tax=Eubact... 742 0.0 UniRef50_B9KZ27 DNA polymerase III alpha subunit n=1 Tax=Thermom... 742 0.0 UniRef50_C4ZGM2 DNA polymerase III, alpha subunit n=7 Tax=Bacter... 741 0.0 UniRef50_C7RGV3 DNA polymerase III, alpha subunit n=4 Tax=Clostr... 739 0.0 UniRef50_Q3Z6I2 DNA polymerase III, alpha subunit n=5 Tax=Dehalo... 737 0.0 UniRef50_O83675 DNA polymerase III subunit alpha n=5 Tax=Trepone... 735 0.0 UniRef50_D1C3B9 DNA polymerase III, alpha subunit n=1 Tax=Sphaer... 733 0.0 UniRef50_D1CB25 DNA polymerase III, alpha subunit n=1 Tax=Thermo... 733 0.0 UniRef50_D0RP61 DNA polymerase III subunit alpha n=1 Tax=alpha p... 730 0.0 UniRef50_Q1AX16 DNA polymerase III catalytic subunit, DnaE type ... 729 0.0 UniRef50_O34623 DNA polymerase III subunit alpha n=111 Tax=Bacte... 729 0.0 UniRef50_D2R3M9 DNA polymerase III, alpha subunit n=4 Tax=Planct... 728 0.0 UniRef50_Q11YX8 DNA polymerase III, alpha subunit n=3 Tax=Bacter... 726 0.0 UniRef50_B0MXW1 Putative uncharacterized protein n=1 Tax=Alistip... 726 0.0 UniRef50_C3XGX7 DNA polymerase subunit III n=1 Tax=Helicobacter ... 726 0.0 UniRef50_C6D8C3 DNA polymerase III, alpha subunit n=5 Tax=Firmic... 724 0.0 UniRef50_C1XIK2 DNA polymerase III, alpha subunit n=2 Tax=Meioth... 724 0.0 UniRef50_B4S7C7 DNA polymerase III, alpha subunit n=11 Tax=Chlor... 723 0.0 UniRef50_D1NB43 DNA polymerase III, alpha subunit n=1 Tax=Victiv... 722 0.0 UniRef50_A6CCN9 DNA polymerase III alpha subunit n=1 Tax=Plancto... 721 0.0 UniRef50_Q2G7G3 DNA polymerase III, alpha subunit n=2 Tax=Alphap... 720 0.0 UniRef50_B0VJC8 DNA polymerase III, alpha subunit n=1 Tax=Candid... 717 0.0 UniRef50_Q1RKF9 DNA polymerase III subunit alpha n=21 Tax=Ricket... 717 0.0 UniRef50_C6VZ84 DNA polymerase III, alpha subunit n=3 Tax=Sphing... 712 0.0 UniRef50_D0WG97 DNA polymerase III, alpha subunit n=1 Tax=Slacki... 710 0.0 UniRef50_Q9Z7N8 DNA polymerase III subunit alpha n=16 Tax=Chlamy... 706 0.0 UniRef50_B0MN02 Putative uncharacterized protein n=1 Tax=Eubacte... 706 0.0 UniRef50_D1NST8 DNA polymerase III, alpha subunit n=1 Tax=Bifido... 705 0.0 UniRef50_D1AIM1 DNA polymerase III, alpha subunit n=1 Tax=Sebald... 704 0.0 UniRef50_B1ZMU7 DNA polymerase III, alpha subunit n=3 Tax=Opitut... 702 0.0 UniRef50_C7MKU1 DNA-directed DNA polymerase III PolC n=1 Tax=Cry... 702 0.0 UniRef50_UPI0001C3188F DNA polymerase III, alpha subunit n=1 Tax... 699 0.0 UniRef50_D2LTB4 DNA polymerase III, alpha subunit n=1 Tax=Bacill... 699 0.0 UniRef50_Q2GEN2 DNA polymerase III, alpha subunit n=2 Tax=Neoric... 699 0.0 UniRef50_A8VX11 DNA polymerase III, alpha subunit n=1 Tax=Bacill... 694 0.0 UniRef50_A5TY39 DNA-directed DNA polymerase III alpha subunit n=... 694 0.0 UniRef50_C4YXX0 DNA polymerase III, alpha subunit family n=1 Tax... 692 0.0 UniRef50_B5JFB3 DNA polymerase III, alpha subunit subfamily, put... 692 0.0 UniRef50_A5FKC9 DNA polymerase III, alpha subunit n=26 Tax=cellu... 687 0.0 UniRef50_C7N8B2 DNA-directed DNA polymerase III PolC n=2 Tax=Cor... 686 0.0 UniRef50_A6DMI0 DNA polymerase III, alpha subunit n=1 Tax=Lentis... 684 0.0 UniRef50_C7NEL3 DNA polymerase III, alpha subunit n=3 Tax=Leptot... 684 0.0 UniRef50_Q9K838 DNA polymerase III subunit alpha n=1 Tax=Bacillu... 684 0.0 UniRef50_Q9Z618 DNA polymerase III subunit alpha n=43 Tax=Actino... 683 0.0 UniRef50_P63978 DNA polymerase III subunit alpha n=117 Tax=root ... 683 0.0 UniRef50_UPI0001C42452 DNA polymerase III alpha subunit n=1 Tax=... 672 0.0 UniRef50_Q83I40 DNA polymerase III alpha subunit n=2 Tax=Tropher... 669 0.0 UniRef50_C7M0P6 DNA polymerase III, alpha subunit n=1 Tax=Acidim... 667 0.0 UniRef50_C0QYZ2 DNA polymerase III, alpha subunit n=2 Tax=Brachy... 666 0.0 UniRef50_A9B8D8 DNA polymerase III, alpha subunit n=6 Tax=Chloro... 662 0.0 UniRef50_B4CWT5 DNA polymerase III, alpha subunit n=1 Tax=Chthon... 657 0.0 UniRef50_Q8CXA8 DNA polymerase III (Alpha subunit) n=1 Tax=Ocean... 656 0.0 UniRef50_C5B539 DNA polymerase III, alpha subunit n=1 Tax=Methyl... 650 0.0 UniRef50_Q8KTR8 DNA polymerase alpha subunit n=1 Tax=Candidatus ... 648 0.0 UniRef50_C3CTJ5 Putative uncharacterized protein n=1 Tax=Bacillu... 646 0.0 UniRef50_C8W788 DNA polymerase III, alpha subunit n=1 Tax=Atopob... 642 0.0 UniRef50_A6LHM2 DNA polymerase III alpha subunit n=46 Tax=Bacter... 641 0.0 UniRef50_C1CZH7 Putative DNA-directed DNA polymerase (DNA polyme... 639 0.0 UniRef50_C0YII7 DNA-directed DNA polymerase n=1 Tax=Chryseobacte... 639 0.0 UniRef50_A4IRQ9 DNA polymerase III alpha subunit n=5 Tax=Geobaci... 638 0.0 UniRef50_B2RGQ8 DNA polymerase III alpha subunit n=2 Tax=Porphyr... 633 e-179 UniRef50_C2MCQ0 DNA polymerase III, alpha subunit family n=1 Tax... 632 e-179 UniRef50_C3JBN3 DNA polymerase III, alpha subunit family n=2 Tax... 629 e-178 UniRef50_B7GGS6 DNA polymerase III, alpha subunit n=1 Tax=Anoxyb... 627 e-178 UniRef50_Q9RX08 DNA polymerase III subunit alpha n=2 Tax=Deinoco... 626 e-177 UniRef50_Q8RNG1 Polymerase III subunit alpha (Fragment) n=17 Tax... 625 e-177 UniRef50_C4F7F9 Putative uncharacterized protein n=2 Tax=Collins... 625 e-177 UniRef50_A8ZS53 DNA polymerase III, alpha subunit n=1 Tax=Desulf... 625 e-177 UniRef50_D0JAY7 DNA polymerase III subunit alpha n=2 Tax=Blattab... 619 e-175 UniRef50_B3XXI1 Putative DNA polymerase III, alpha subunit n=1 T... 617 e-175 UniRef50_Q38WU5 DNA-directed DNA polymerase III, alpha subunit n... 616 e-174 UniRef50_B9CKX0 DNA polymerase III subunit alpha n=1 Tax=Atopobi... 609 e-172 UniRef50_C7XU22 DNA polymerase III n=1 Tax=Lactobacillus coleoho... 604 e-171 UniRef50_C6X5Z0 DNA polymerase III alpha subunit n=1 Tax=Flavoba... 602 e-170 UniRef50_A8RC96 Putative uncharacterized protein n=2 Tax=Erysipe... 600 e-170 UniRef50_B7ABG0 DNA polymerase III, alpha subunit n=2 Tax=cellul... 597 e-169 UniRef50_B1HX19 DNA polymerase III subunit alpha n=2 Tax=Bacilla... 596 e-168 UniRef50_Q1WTT4 DNA polymerase III alpha subunit n=2 Tax=Lactoba... 591 e-167 UniRef50_Q03SB6 DNA polymerase III catalytic subunit, DnaE type ... 590 e-167 UniRef50_A4EAI0 Putative uncharacterized protein n=1 Tax=Collins... 586 e-165 UniRef50_C2D6U4 Possible DNA-directed DNA polymerase n=1 Tax=Ato... 585 e-165 UniRef50_C3RN28 DNA polymerase III dnaE (Fragment) n=3 Tax=Bacte... 584 e-165 UniRef50_P74750 Ssp dnaE intein (Fragments) n=29 Tax=Cyanobacter... 575 e-162 UniRef50_B2GC21 DNA-directed DNA polymerase III alpha subunit n=... 570 e-161 UniRef50_C5QT78 DNA polymerase III, alpha subunit n=5 Tax=Staphy... 569 e-160 UniRef50_Q5WEF1 DNA polymerase III alpha subunit DnaE n=1 Tax=Ba... 565 e-159 UniRef50_C9B7L3 DNA polymerase III alpha subunit n=18 Tax=Entero... 563 e-158 UniRef50_Q6G8M4 DNA polymerase III subunit alpha n=62 Tax=Staphy... 562 e-158 UniRef50_D0MJZ2 DNA polymerase III, alpha subunit n=1 Tax=Rhodot... 558 e-157 UniRef50_C8WRV2 DNA polymerase III, alpha subunit n=2 Tax=Alicyc... 555 e-156 UniRef50_C2E227 Possible DNA-directed DNA polymerase n=9 Tax=Lac... 552 e-155 UniRef50_C0QPU4 DNA polymerase III subunit alpha n=2 Tax=Aquific... 548 e-154 UniRef50_B3WE63 DNA-directed DNA polymerase III, alpha subunit n... 548 e-154 UniRef50_C9RMS0 DNA polymerase III, alpha subunit n=1 Tax=Fibrob... 546 e-153 UniRef50_C5RC77 DNA-directed DNA polymerase III, alpha chain n=1... 546 e-153 UniRef50_B9E7A8 DNA polymerase III alpha chain n=1 Tax=Macrococc... 543 e-152 UniRef50_Q043V3 DNA polymerase III catalytic subunit, DnaE type ... 542 e-152 UniRef50_C0GKP9 DNA polymerase III, alpha subunit n=1 Tax=Dethio... 537 e-150 UniRef50_D2EL28 DNA polymerase III subunit alpha n=1 Tax=Pedioco... 536 e-150 UniRef50_A8YV21 DNA polymerase III alpha subunit n=5 Tax=Lactoba... 535 e-150 UniRef50_B9L411 Error-prone DNA polymerase n=1 Tax=Thermomicrobi... 533 e-149 UniRef50_C0GW63 DNA polymerase III, alpha subunit n=2 Tax=Desulf... 533 e-149 UniRef50_C2E9M6 DNA polymerase III alpha subunit n=1 Tax=Lactoba... 532 e-149 UniRef50_D0BKV5 DNA polymerase III, alpha subunit n=1 Tax=Granul... 527 e-147 UniRef50_C8NF53 DNA polymerase III, alpha subunit n=1 Tax=Granul... 527 e-147 UniRef50_Q67N73 Error-prone DNA polymerase n=1 Tax=Symbiobacteri... 525 e-147 UniRef50_C8NZJ2 DNA polymerase III subunit alpha n=1 Tax=Erysipe... 522 e-146 UniRef50_C4FWP2 Putative uncharacterized protein n=1 Tax=Catonel... 521 e-146 UniRef50_Q03F73 DNA polymerase III catalytic subunit, DnaE type ... 521 e-146 UniRef50_B1MYD7 DNA polymerase III, alpha subunit n=3 Tax=Leucon... 517 e-144 UniRef50_UPI00016C4B8A DNA polymerase III alpha subunit n=1 Tax=... 514 e-144 UniRef50_C8WVC5 DNA polymerase III, alpha subunit n=2 Tax=Alicyc... 513 e-143 UniRef50_C3RQQ8 DNA polymerase III subunit alpha n=1 Tax=Mollicu... 510 e-142 UniRef50_B7CD33 Putative uncharacterized protein n=1 Tax=Eubacte... 510 e-142 UniRef50_C6I172 DNA-directed DNA polymerase n=1 Tax=Leptospirill... 497 e-138 UniRef50_Q114C9 DNA polymerase III, alpha subunit / Intein n=28 ... 497 e-138 UniRef50_C6UN37 DNA polymerase III, alpha subunit n=1 Tax=Candid... 495 e-138 UniRef50_B6W6J1 Putative uncharacterized protein n=1 Tax=Anaeroc... 491 e-137 UniRef50_D1AVZ7 DNA polymerase III, alpha subunit n=1 Tax=Strept... 488 e-136 UniRef50_D1C6C8 DNA polymerase III, alpha subunit n=1 Tax=Sphaer... 482 e-134 UniRef50_Q3ADH8 DNA polymerase III, alpha subunit n=1 Tax=Carbox... 466 e-129 UniRef50_Q14LT7 Probable dna polymerase III alpha chain transmem... 464 e-129 UniRef50_C5NW81 DNA polymerase III subunit alpha n=1 Tax=Gemella... 454 e-126 UniRef50_Q04B00 DNA polymerase III catalytic subunit, DnaE type ... 453 e-125 UniRef50_A9NET2 DNA polymerase III alpha subunit n=1 Tax=Acholep... 440 e-121 UniRef50_B1ZZZ1 DNA polymerase III, alpha subunit n=1 Tax=Opitut... 439 e-121 UniRef50_Q1AUQ9 DNA polymerase III, alpha subunit n=1 Tax=Rubrob... 437 e-120 UniRef50_A0LGS3 DNA polymerase III, alpha subunit n=1 Tax=Syntro... 436 e-120 UniRef50_Q8EWK5 DNA polymerase III subunit alpha n=1 Tax=Mycopla... 433 e-119 UniRef50_B7IZN8 DNA polymerase III, alpha subunit n=1 Tax=Bacill... 433 e-119 UniRef50_Q9PQ74 DNA polymerase III subunit alpha n=15 Tax=Ureapl... 432 e-119 UniRef50_Q04F63 DNA polymerase III, alpha subunit n=5 Tax=Oenoco... 432 e-119 UniRef50_C1F6L4 DNA polymerase III, alpha subunit n=2 Tax=Acidob... 432 e-119 UniRef50_Q05FW7 DNA polymerase III alpha subunit n=1 Tax=Candida... 430 e-118 UniRef50_D2DXW4 DNA polymerase III alpha subunit (Fragment) n=1 ... 426 e-117 UniRef50_B8FIN6 DNA polymerase III, alpha subunit n=1 Tax=Desulf... 423 e-116 UniRef50_Q1IJA3 DNA polymerase III, alpha subunit n=4 Tax=Bacter... 421 e-116 UniRef50_A7BC77 Putative uncharacterized protein n=1 Tax=Actinom... 421 e-115 UniRef50_B3PMZ7 DNA polymerase III subunit alpha n=1 Tax=Mycopla... 419 e-115 UniRef50_Q9CI70 DNA polymerase III subunit alpha n=4 Tax=Lactoco... 418 e-115 UniRef50_Q5XBV1 DNA polymerase III subunit alpha n=99 Tax=Strept... 417 e-114 UniRef50_B8HIY5 DNA polymerase III, alpha subunit n=1 Tax=Arthro... 416 e-114 UniRef50_Q6F0N2 DNA polymerase III alpha subunit n=2 Tax=Mollicu... 414 e-114 UniRef50_Q6A780 Error-prone DNA polymerase n=9 Tax=Actinobacteri... 414 e-113 UniRef50_B4W2C3 DNA polymerase III, alpha subunit subfamily, put... 413 e-113 UniRef50_Q7UXK9 Error-prone DNA polymerase n=1 Tax=Rhodopirellul... 412 e-113 UniRef50_B2ZNW2 Gp65 n=6 Tax=unclassified Siphoviridae RepID=B2Z... 412 e-113 UniRef50_D0LSK7 DNA polymerase III, alpha subunit n=2 Tax=Nannoc... 410 e-112 UniRef50_Q98PK3 DNA POLYMERASE III, ALPHA CHAIN n=1 Tax=Mycoplas... 409 e-112 UniRef50_D1J8K0 DNA polymerase III, alpha chain n=1 Tax=Mycoplas... 405 e-111 UniRef50_D1BHX7 DNA polymerase III, alpha subunit n=1 Tax=Sangui... 405 e-111 UniRef50_A4X9U2 DNA polymerase III, alpha subunit n=5 Tax=Actino... 405 e-111 UniRef50_Q3A3S3 DNA polymerase III, alpha subunit n=2 Tax=Desulf... 404 e-111 UniRef50_Q5Z1D1 Error-prone DNA polymerase n=42 Tax=Bacteria Rep... 404 e-111 UniRef50_A5CR60 DNA polymerase III, alpha chain n=2 Tax=Micrococ... 403 e-110 >UniRef50_Q8X8X5 DNA polymerase III subunit alpha n=288 Tax=cellular organisms RepID=DPO3A_ECO57 Length = 1160 Score = 2380 bits (6169), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1158/1160 (99%), Positives = 1159/1160 (99%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA Sbjct: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW Sbjct: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 180 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES Sbjct: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 180 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM Sbjct: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 Query: 241 RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKEGL 300 RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKEGL Sbjct: 241 RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKEGL 300 Query: 301 EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360 EERLAFLFPDEEER+KRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP Sbjct: 301 EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360 Query: 361 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD Sbjct: 361 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420 Query: 421 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQ 480 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQ Sbjct: 421 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQ 480 Query: 481 LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQ 540 LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQ Sbjct: 481 LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQ 540 Query: 541 FDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDML 600 FDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDML Sbjct: 541 FDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDML 600 Query: 601 QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE 660 QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE Sbjct: 601 QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE 660 Query: 661 ISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM 720 ISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM Sbjct: 661 ISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM 720 Query: 721 AKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA 780 AKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA Sbjct: 721 AKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA 780 Query: 781 EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG 840 EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG Sbjct: 781 EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG 840 Query: 841 VGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMN 900 VGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMN Sbjct: 841 VGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMN 900 Query: 901 SLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLY 960 SLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLY Sbjct: 901 SLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLY 960 Query: 961 LTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLD 1020 LTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLD Sbjct: 961 LTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLD 1020 Query: 1021 DRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKY 1080 DRSGRLEVMLFTDALDKYQ LLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKY Sbjct: 1021 DRSGRLEVMLFTDALDKYQHLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKY 1080 Query: 1081 ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSD 1140 ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSD Sbjct: 1081 ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSD 1140 Query: 1141 RLLNDLRGLIGSEQVELEFD 1160 RLLNDLRGLIGSEQVELEFD Sbjct: 1141 RLLNDLRGLIGSEQVELEFD 1160 >UniRef50_P52022 DNA polymerase III subunit alpha n=118 Tax=Gammaproteobacteria RepID=DPO3A_VIBCH Length = 1159 Score = 1874 bits (4854), Expect = 0.0, Method: Compositional matrix adjust. Identities = 882/1160 (76%), Positives = 1014/1160 (87%), Gaps = 1/1160 (0%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS+P+F+HLR+HSD+SM+DGL+K PLVKK AA+GMPA+A+TDFTNLCGLVKFY H Sbjct: 1 MSDPKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNC 60 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 G+KPI+GADF +Q + GDELT LT+LA NN GY+NLTLLISKAY RG+ P+ID+ W Sbjct: 61 GVKPIIGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAW 120 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 180 L+E EGLI+LSGG+ G+VGR+LL+GN V+ C+ FY+ HF D ++LELIRTGR DEES Sbjct: 121 LVEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEES 180 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 YLH A+++AE LPVVATN+V FI F+AHEIRVAIHDG+TL+DP+RP+NYSP+QY+ Sbjct: 181 YLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYL 240 Query: 241 RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKEGL 300 RSE EMCELFADIPEALAN+VEIAKRCNVTVRLGEYFLP FPTG M+ ED+LV +++EGL Sbjct: 241 RSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTGGMAIEDFLVMKSREGL 300 Query: 301 EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360 EERL FLFPD E R KRRPEYDERL+ EL VINQMGFPGYFLIVMEFIQWSKDN +PVGP Sbjct: 301 EERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 360 Query: 361 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420 GRGSGAGSLVAYALKITDLDPLE+DLLFERFLNPERVSMPDFDVDFCM+KRDQVI+HVA+ Sbjct: 361 GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420 Query: 421 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQ 480 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHP+GFVDRISKL+PPDPGMTL KAF AEP Sbjct: 421 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFIAEPA 480 Query: 481 LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQ 540 L E+Y+ADEEVK LID R LEG TRNAGKHAGGVVI+PT ITDFAP+YCD EG PVTQ Sbjct: 481 LQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPVTQ 540 Query: 541 FDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDML 600 FDK+DVE AGLVKFDFLGLRTLTII+WAL ++N R K G+PP+ I AIPLDD +SF L Sbjct: 541 FDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFRNL 600 Query: 601 QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE 660 Q ++TTAVFQLESRGMK+LIKRLQPDCFED+IALVALFRPGPLQSGMVDNFIDRKHGRE Sbjct: 601 QDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREA 660 Query: 661 ISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM 720 ISYPD +WQHESLK +LEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM Sbjct: 661 ISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM 720 Query: 721 AKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA 780 AKQR+VF EGAEKNG++ ELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK HYPA Sbjct: 721 AKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPA 780 Query: 781 EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG 840 EFMAAVMTADMDNTEKVVGLVDEC MGL +LPPDINSGLY F+V+D+G IVYGIGAIKG Sbjct: 781 EFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDDNGAIVYGIGAIKG 840 Query: 841 VGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMN 900 VGEGPIEAI+EARNKGGYF++LFD CAR D KK+N+RV+EKLI++GA DRLGPHRAA+M Sbjct: 841 VGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLGPHRAAMMA 900 Query: 901 SLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLY 960 S+ DA++AA QH +AEA GQADMFGVL + PE++EQ Y WPE+V L+GERETLGLY Sbjct: 901 SVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLEGERETLGLY 960 Query: 961 LTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLD 1020 LTGHP+++YLKE+ +Y RL + PT R + +T AGLV+AARVM TKRG RIG+ TLD Sbjct: 961 LTGHPVDEYLKELTKYT-SCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRGTRIGLMTLD 1019 Query: 1021 DRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKY 1080 DRSGR+EVML+++ALD+Y + LEKD+IL+VSGQVSFDDF+GGLKM+AREVMD+ AREK+ Sbjct: 1020 DRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGGLKMSAREVMDLGSAREKF 1079 Query: 1081 ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSD 1140 ARGL+IS+ QID Q R LEPHR+GT+PV++YYQR DARARL G WRV+PSD Sbjct: 1080 ARGLSISILQSQIDQQFFERFSHILEPHRAGTVPVNVYYQRPDARARLTLGTEWRVTPSD 1139 Query: 1141 RLLNDLRGLIGSEQVELEFD 1160 LL++L+ L+G +QVELEF+ Sbjct: 1140 TLLDELKQLLGHDQVELEFN 1159 >UniRef50_Q8K9S3 DNA polymerase III subunit alpha n=4 Tax=Enterobacteriaceae RepID=DPO3A_BUCAP Length = 1161 Score = 1392 bits (3603), Expect = 0.0, Method: Compositional matrix adjust. Identities = 654/1166 (56%), Positives = 883/1166 (75%), Gaps = 13/1166 (1%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M+ FVHL VHSDYS++DGL+K L+KK+ LGM AL+ITDF NL G +KFY A H Sbjct: 1 MNLEEFVHLHVHSDYSIVDGLSKPEDLIKKSVNLGMKALSITDFNNLYGAIKFYNAAHKW 60 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPI-IDRD 119 G+KPI+G +L+ +ELT LT+LA N GY+NL LLIS+AY++GY + I++ Sbjct: 61 GLKPIIGVTVKFFSELIKNELTELTLLATNQDGYKNLILLISRAYKKGYFCEKYVTIEKK 120 Query: 120 WLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEE 179 WL ELN GLILLSGG G++G++LLRG ++L+ +C+ FYE++F Y+LELIRT R +EE Sbjct: 121 WLSELNNGLILLSGGCQGEIGKTLLRGQTSLISDCLHFYEKYFSGFYYLELIRTYRENEE 180 Query: 180 SYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQY 239 YL AV+L+ ++ +PVVATNDV F++ DF H+IR+AI++G L + K NYS Q+ Sbjct: 181 KYLSLAVDLSYSQNIPVVATNDVCFLNKEDFKIHKIRIAINEGVRLKESKIQNNYSKHQF 240 Query: 240 MRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKEG 299 +++E+EMC LF+DIPEA+ N+VEI+KRCNV ++ G+YFLPQF T +S E+YL++++ +G Sbjct: 241 LKTEKEMCFLFSDIPEAIINSVEISKRCNVFIKSGQYFLPQFNTRKISIENYLIQKSNKG 300 Query: 300 LEERLAFLFP--DEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVP 357 L++RL F D+E LK Y RL+TEL +IN+MGFP YFLIVMEFIQW+KDN +P Sbjct: 301 LKKRLESNFKKVDKEIFLK----YKNRLDTELGIINKMGFPSYFLIVMEFIQWAKDNNIP 356 Query: 358 VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEH 417 VGPGRGSGAGSLVAY L IT++DPL FDLLFERFLNPER+S+PDFD+DFCMEKRD+VIEH Sbjct: 357 VGPGRGSGAGSLVAYVLNITEVDPLFFDLLFERFLNPERISLPDFDIDFCMEKRDRVIEH 416 Query: 418 VADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEA 477 V YGR++V+QIITFGTM AKAVIRDVGRVLG+PYGF++ +SKL+P DPG+TL AF Sbjct: 417 VVHTYGRESVAQIITFGTMTAKAVIRDVGRVLGYPYGFINNLSKLVPLDPGITLKDAFSK 476 Query: 478 EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHP 537 +L +Y++DE+++ LID+++KLEGV RN GKHAGGVVI+P+KITDF P+YCDE+G +P Sbjct: 477 NSELYTLYKSDEDIQNLIDVSKKLEGVNRNVGKHAGGVVISPSKITDFCPVYCDEKGNNP 536 Query: 538 VTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSF 597 VTQFDK+D+EY GL+KFDFLGLRTLTIIN A+ MINK + + ++I +IPL++ K F Sbjct: 537 VTQFDKNDIEYVGLLKFDFLGLRTLTIINCAVNMINKNLLLSNKKTININSIPLNESKCF 596 Query: 598 DMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHG 657 +L++ ETT +FQLES GMKDL+KRLQPDCFED+IAL+ALFRPGPLQSGMVDNFI+RKHG Sbjct: 597 LLLKKCETTGIFQLESYGMKDLVKRLQPDCFEDIIALIALFRPGPLQSGMVDNFINRKHG 656 Query: 658 REEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKP 717 EEISYPD +WQH LKPVLE TYGIILYQEQVMQIAQ+L+GYTLG AD+LRRAM KK Sbjct: 657 YEEISYPDHKWQHILLKPVLESTYGIILYQEQVMQIAQILAGYTLGKADILRRAMSKKNI 716 Query: 718 EEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAH 777 ++MA+QRS+F EGA+KNGIN +LA+KIFDL+EKFAGYGFNKSHS AYALVSYQTLWLKAH Sbjct: 717 KDMAEQRSIFIEGAQKNGINRKLAIKIFDLLEKFAGYGFNKSHSVAYALVSYQTLWLKAH 776 Query: 778 YPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGA 837 YP+EFMA+ MT+D+DNT+K+V LV+E +MG+KI+PP+IN Y F+V+ IVYG+GA Sbjct: 777 YPSEFMASAMTSDIDNTDKIVMLVNESIQMGIKIIPPNINLSKYEFYVDHTKNIVYGLGA 836 Query: 838 IKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAA 897 +KG+G PI +++ R K G F +LFDLC RTD K+ R+VLEKLIMSG+ D +R Sbjct: 837 VKGIGRNPILNLVQEREKNGLFSDLFDLCMRTDPNKITRKVLEKLIMSGSCDCFNKNRNY 896 Query: 898 LMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWP-EQVVLDGERET 956 L++ + DA+KA+ +H K + Q +FG EE ++++ + E+ L+ E + Sbjct: 897 LLSLIEDAIKASKEHFKIKKFQQESLFGSFKEELNILKKNNNLLNSFSDEEKKLENEHKV 956 Query: 957 LGLYLTGHPINQYLKEIERYVGG---VRLKDMHPTERGKVITAAGLVVAARVMVTKRGNR 1013 LGLYLTGHPI++Y +E++ Y+ +LK + T+ K I AG+VV+ + VTK NR Sbjct: 957 LGLYLTGHPIDRYAEELKYYLNNSTFSKLKLFNHTK--KKIMVAGIVVSIKTKVTKNKNR 1014 Query: 1014 IGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDI 1073 I I LDD +G LEV++F L+ ++L++ ++ILIVSG ++ + S LKMTA ++M++ Sbjct: 1015 IVILILDDSTGLLEVVIFKRLLNISEKLIQLNKILIVSGFLNTNFISKNLKMTAYDIMNL 1074 Query: 1074 DEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGAT 1133 + AREKY L I LT++Q D L ++ Q + +G +PV+++ ++ D + + Sbjct: 1075 NLAREKYLDKLTIVLTEKQRDKCFLKKIYQFFQNQTTGIVPVYIFCKKKDLDSEYKLIKK 1134 Query: 1134 WRVSPSDRLLNDLRGLIGSEQVELEF 1159 W ++ S++LL +L ++++++ Sbjct: 1135 WLITISNKLLVELDIFSKENKMQIKY 1160 >UniRef50_Q9HXZ1 DNA polymerase III subunit alpha n=46 Tax=Gammaproteobacteria RepID=DPO3A_PSEAE Length = 1173 Score = 1371 bits (3548), Expect = 0.0, Method: Compositional matrix adjust. Identities = 689/1174 (58%), Positives = 865/1174 (73%), Gaps = 26/1174 (2%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHLR+H+++S++DGL + PL K A LGMPA+A+TD +N+C LVKFY GAGIKPI Sbjct: 5 FVHLRLHTEFSLVDGLVRVKPLAKAVAGLGMPAVAVTDQSNMCSLVKFYKTAMGAGIKPI 64 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 GAD + L+ L++LA N GY+NLT LIS+ + G II+RDW+ E Sbjct: 65 CGADIWLASREEDGPLSRLSLLAMNAKGYRNLTELISRGWSEGQRNGEIIIERDWVKEAA 124 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 185 EGLI LS + G++G +LL G A + + + E FP+R+++E+ RT R ++E +LHAA Sbjct: 125 EGLIALSAAKEGEIGHALLDGEEAKAEALLREWMEVFPERFYVEVQRTSRVNDEEHLHAA 184 Query: 186 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 245 V LA P+VATNDVRFI DF+AHE RV I +G TLDDP+RPR YS QQY++S E Sbjct: 185 VALASRCNAPLVATNDVRFIKQEDFEAHETRVCIGEGRTLDDPRRPRTYSDQQYLKSPAE 244 Query: 246 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGD-MSTEDYLVKRAKEGLEERL 304 M ELF+D+PEAL NTVEIAKRCN+ V+LG+YFLP FPT + M +DYL + EGLEERL Sbjct: 245 MAELFSDLPEALENTVEIAKRCNIEVQLGKYFLPDFPTPNGMGIDDYLRHASFEGLEERL 304 Query: 305 AFLFP-DEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRG 363 L P D + +R Y +RL EL +I QMGFPGYFLIVM+FI+W+K+NGVPVGPGRG Sbjct: 305 EVLLPKDTPDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIKWAKNNGVPVGPGRG 364 Query: 364 SGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYG 423 SGAGSLVAY LKITDLDPL +DLLFERFLNPER+SMPDFDVDFCME RD+VI++VAD YG Sbjct: 365 SGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFCMEGRDRVIDYVADAYG 424 Query: 424 RDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPE 483 R+AVSQIITFGTMAAKAV+RDV RV G YG DR+SK+IP + GMTL KA+E E L + Sbjct: 425 RNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLDKAYEQEEMLRD 484 Query: 484 IYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDK 543 ++DEE + +MA KLEG+TR GKHAGGVVIAPTK+TDF+P+ CDEEG VTQFDK Sbjct: 485 FLKSDEEAAEIWEMALKLEGITRGTGKHAGGVVIAPTKLTDFSPIACDEEGGGLVTQFDK 544 Query: 544 SDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRS 603 DVE AGLVKFDFLGLRTLTII WA+E+IN+ +AK G P++I IPLDDK ++ +LQ++ Sbjct: 545 DDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKGLEPVNIDFIPLDDKPTYSLLQKA 604 Query: 604 ETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISY 663 ETTAVFQLESRGMK+LIK+L+PDC ED+IALVALFRPGPLQSGMVD+FI+RKHGR E+SY Sbjct: 605 ETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGRAELSY 664 Query: 664 PDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQ 723 P +Q+ L+PVL+PTYGIILYQEQVMQIAQV++GYTLGGADMLRRAMGKKKPEEMAKQ Sbjct: 665 PHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPEEMAKQ 724 Query: 724 RSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFM 783 R F EG + NGI+A+LA IFDLVEKFAGYGFNKSHSAAY LVSYQT WLK H+PA FM Sbjct: 725 RGGFIEGCKNNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHFPAPFM 784 Query: 784 AAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGE 843 AAV+TADM NT+KVV L++EC M L+I+ PD+N+ + F V+DDG IVYG+GAIKGVGE Sbjct: 785 AAVLTADMQNTDKVVTLIEECRHMKLRIVAPDVNNSEFRFTVDDDGRIVYGLGAIKGVGE 844 Query: 844 GPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPH--------- 894 GP+EAI E R +GG F LFD C R D K++N+R LE LI +GA DRLGPH Sbjct: 845 GPVEAITECRAEGGPFNTLFDFCDRVDLKRINKRTLEALIRAGALDRLGPHYHDELKAYQ 904 Query: 895 ------RAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQV 948 RA L+ ++ +A++AA+Q A++ G D+FG + EPE YA+ + E Sbjct: 905 ATVDLNRAVLLAAMEEAIQAAEQTARSHDSGHMDLFGGVFAEPEA--DVYANHRKVKELT 962 Query: 949 V---LDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARV 1005 + L GE++TLGLYLTGHPI++Y E+ R+ R+ ++ P + T AGL+V RV Sbjct: 963 LKERLKGEKDTLGLYLTGHPIDEYEGEVRRFARQ-RIVELKPARDTQ--TVAGLIVNLRV 1019 Query: 1006 MVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKM 1065 M K+G+++G TLDDRSGR+E LF++A Q LL+ D +++V G+VS DDFSGGL++ Sbjct: 1020 MKNKKGDKMGFVTLDDRSGRIEASLFSEAFAAAQSLLQTDALVVVEGEVSQDDFSGGLRL 1079 Query: 1066 TAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADAR 1125 A+ VM ++EAR A L + L + L L + HR G+ P+ L Y ADA+ Sbjct: 1080 RAKRVMSLEEARTGLAESLRMKLHADLLKGDRLRWLGELFNRHR-GSCPITLDYTSADAK 1138 Query: 1126 ARLRFGATWRVSPSDRLLNDLRGLIGSEQVELEF 1159 A L+FG +WRV P+D L+ LR G + V L + Sbjct: 1139 ALLQFGESWRVDPADDLIQALRDQFGRDNVFLNY 1172 >UniRef50_C5BQZ9 DNA polymerase III, alpha subunit n=10 Tax=Gammaproteobacteria RepID=C5BQZ9_TERTT Length = 1171 Score = 1353 bits (3503), Expect = 0.0, Method: Compositional matrix adjust. Identities = 676/1169 (57%), Positives = 865/1169 (73%), Gaps = 21/1169 (1%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL+V +++S++D + + PL+++ A MPA ITD N GL+KFY A G+GIKPI Sbjct: 3 FVHLKVRTEFSLVDSIIRVKPLLQRVQAEAMPACGITDLHNFFGLLKFYRAAQGSGIKPI 62 Query: 66 VGADFNVQCDLLGDELTH---LTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLI 122 GADF + GD+ H +T+ A N GY+N+T LIS+++Q G P ID WL Sbjct: 63 CGADFRIHK--AGDDDLHPPLITLYAMNLAGYKNITALISRSFQEGQSMGEPYIDESWLE 120 Query: 123 ELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYL 182 +EG+I LSG + G++G+ L+ +E + + DR++LEL RTGR ++E +L Sbjct: 121 PHSEGVIALSGAKFGEIGQLLVTNKLDEAEEKLQQMMGIYRDRFYLELQRTGRENDELHL 180 Query: 183 HAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRS 242 H AV LA PVVATNDVRF+DS F+ HE RV I +G TLDDP+R R YS +QY RS Sbjct: 181 HRAVGLAAKLDCPVVATNDVRFLDSDQFEVHEARVCIGEGRTLDDPRRERRYSDEQYFRS 240 Query: 243 EEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTED-YLVKRAKEGLE 301 EMCELFADIPEA+ NTVEIA+RCN+ + LG+YFLP++P + TE+ + K +EGL+ Sbjct: 241 TAEMCELFADIPEAIENTVEIARRCNLDILLGKYFLPEYPIPEGLTENEFFEKICREGLD 300 Query: 302 ERLA-FLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360 RL L + L+RR YDERL+ EL +I QMGFPGYFLIVM+FIQW+KD+ +PVGP Sbjct: 301 LRLERILDTSAPDYLERRKVYDERLKFELDIIIQMGFPGYFLIVMDFIQWAKDHKIPVGP 360 Query: 361 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420 GRGSGAGSLVAY LKITDLDPL++DLLFERFLNPERVSMPDFDVDFCME RD+VI +VAD Sbjct: 361 GRGSGAGSLVAYVLKITDLDPLQYDLLFERFLNPERVSMPDFDVDFCMEDRDKVIGYVAD 420 Query: 421 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQ 480 YGRDAVSQIITFGTMAAKAV+RDV RV G YG D++SK+IPPD GMTL KA+E E Sbjct: 421 NYGRDAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKMIPPDVGMTLTKAYEQEEI 480 Query: 481 LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQ 540 L E + D + + + DMA +LEGVTRN GKHAGGVVIAPTK+ DFAPLYCD+ G VTQ Sbjct: 481 LREFLQNDGDGQEIWDMALQLEGVTRNVGKHAGGVVIAPTKLIDFAPLYCDDTGGGLVTQ 540 Query: 541 FDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDML 600 FDK+DVE AGLVKFDFLGLRTLTII+WA+ MI+++R + GEPPLDI+AIPLDD +FDML Sbjct: 541 FDKNDVEDAGLVKFDFLGLRTLTIIDWAVTMIDQQRTRLGEPPLDISAIPLDDPTTFDML 600 Query: 601 QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE 660 +++ETTAVFQLESRGMKDLIKRLQPD EDMIALVALFRPGPLQSGMVD+FI+RKHGR + Sbjct: 601 KKAETTAVFQLESRGMKDLIKRLQPDNLEDMIALVALFRPGPLQSGMVDDFINRKHGRAQ 660 Query: 661 ISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM 720 ++YPD ++QH SL+P+LEPTYG+I+YQEQVMQIAQVL+GYTLGGAD+LRRAMGKKKPEEM Sbjct: 661 VAYPDAKYQHTSLQPILEPTYGVIVYQEQVMQIAQVLAGYTLGGADLLRRAMGKKKPEEM 720 Query: 721 AKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA 780 AKQRS+FA+GA+ GI+ +LAMKIFDLVEKFAGYGFNKSHSAAYALVSYQT WLKAHYPA Sbjct: 721 AKQRSIFADGAKGLGIDPDLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTAWLKAHYPA 780 Query: 781 EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG 840 FMAA M++DMD T+KVV ++EC M L +LPPD+N G + F V++D I+YG+GAIKG Sbjct: 781 HFMAATMSSDMDKTDKVVTFIEECRTMKLNLLPPDVNRGEFQFTVDEDANIIYGLGAIKG 840 Query: 841 VGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGP------H 894 +GEGP+E+I+EAR K G F++LFD CAR D ++LN+R LE L+ SGA D LGP Sbjct: 841 LGEGPVESILEAR-KTGPFKDLFDFCARVDGRRLNKRALEALVRSGALDNLGPGKDIDYD 899 Query: 895 RAALMNSLGDALKAADQHAKAEAIGQADMFG---VLAEEPEQIEQSYASCQPWPEQVVLD 951 RA + ++ +A+KAA+Q + G +D+FG ++E+ + + Q + + W + L+ Sbjct: 900 RAVMHIAIAEAVKAAEQKSANANAGISDLFGEVVPVSEDRQSVYQDFHRVRRWSMKERLN 959 Query: 952 GERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRG 1011 GE+ETLGLYLTGHPI++Y KE+ +V + H T AGLVVA RVM TKRG Sbjct: 960 GEKETLGLYLTGHPIDEYDKELSNFVSS---RIFHLKAEKNKQTVAGLVVAFRVMKTKRG 1016 Query: 1012 NRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVM 1071 + + TLDDR+GR+EV +F+DA ++ L KD +L+++GQVSFDD+SGGLKM A E+ Sbjct: 1017 DNMAFVTLDDRTGRIEVAVFSDAYSDNREKLVKDALLVITGQVSFDDYSGGLKMRADEIT 1076 Query: 1072 DIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHR-SGTIPVHLYYQRADARARLRF 1130 D++EAR+ R + + + + R+ ++ + +G + + YQ+A A Sbjct: 1077 DLNEARQASVRAIKLRWRSEALPLDYEKQFRELVKSYSGAGNCALIVDYQKAGVSATYTL 1136 Query: 1131 GATWRVSPSDRLLNDLRGLIGSEQVELEF 1159 W V+P D L+ L+ L G++ VEL + Sbjct: 1137 SQEWNVAPGDELVESLKMLYGNKNVELVY 1165 >UniRef50_D0SVP0 DNA polymerase subunit III n=3 Tax=Gammaproteobacteria RepID=D0SVP0_ACILW Length = 1190 Score = 1114 bits (2881), Expect = 0.0, Method: Compositional matrix adjust. Identities = 586/1174 (49%), Positives = 781/1174 (66%), Gaps = 49/1174 (4%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 FVHL +H+++S+ + + + LVK A MPALA+TD +NL VKFYG GIKP Sbjct: 2 HFVHLGIHTEFSITESIVRIPDLVKAAEEEQMPALALTDLSNLHAAVKFYGKCLSKGIKP 61 Query: 65 IVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL 124 I+G++ L D +T+LA NTG++NLT L+S+ + G P + + W++ Sbjct: 62 ILGSEIR-----LNDAEHRMTLLAMTNTGWRNLTELVSEGFISGQQLDIPCVQKQWILNQ 116 Query: 125 NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHA 184 E +I L G DVG+ L+ N + + + E F +R +L L RT RPDE++++ Sbjct: 117 PEDMIALLGMH-SDVGKMLMSSNPQKAEPLLEEWVEKFGNRVYLALTRTNRPDEDNFILE 175 Query: 185 AVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEE 244 AV+LA+ + VVA NDV F+ D++AHE RV I DG+ L D +RP+ YSP+QY +S E Sbjct: 176 AVKLAKKYNIGVVAHNDVHFMTRDDYEAHEARVCIADGYVLGDNRRPKTYSPEQYFKSAE 235 Query: 245 EMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTED-YLVKRAKEGLEER 303 EM LF+DIP A+ NT IAKRCNVT++LG+YFLP +P + T D + +KEGLEER Sbjct: 236 EMTALFSDIPSAIENTYHIAKRCNVTLQLGKYFLPDYPIPEGHTIDTFFAHLSKEGLEER 295 Query: 304 LAFLFPDE---EERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360 L FL+P E E+ + R YDER+E E+ +IN MGFPGYFLIVM+FIQWSK NGVPVGP Sbjct: 296 LNFLYPPEQRDEDWPEIRKPYDERIEYEINIINSMGFPGYFLIVMDFIQWSKSNGVPVGP 355 Query: 361 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420 GRGSGAGSLVAY+LKITDLDPL ++LLFERFLNPERVSMPDFDVDFC+ RD+VI++VA Sbjct: 356 GRGSGAGSLVAYSLKITDLDPLRYELLFERFLNPERVSMPDFDVDFCIAGRDRVIDYVAR 415 Query: 421 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFE-AEP 479 YGRDAVSQI TFGTMAAK IRDV RVLG YG DRISK+IP P AEP Sbjct: 416 TYGRDAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMIPTKPLGLSLLESLEAEP 475 Query: 480 QLPEIYEA-----DEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEG 534 QL +I ++ + +MA KLEG+TRN GKHAGGVVI+PTKITDF+ + CD +G Sbjct: 476 QLKDIVTNPSNPDHDDAAEIWEMALKLEGITRNTGKHAGGVVISPTKITDFSAVMCDADG 535 Query: 535 KHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDK 594 V QFDK DVE AGLVKFDFLGLR LT+I A++ INKR + PLDIA I L+DK Sbjct: 536 TGRVAQFDKDDVESAGLVKFDFLGLRNLTVIEDAVKNINKR--IKADKPLDIAYIQLEDK 593 Query: 595 KSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDR 654 ++ + + TTAVFQ ES GMK ++K +P FE++IA V+L+RPGP+ ++ +FI R Sbjct: 594 DAYLVFANANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRPGPMD--LIPDFIHR 651 Query: 655 KHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK 714 HG D ++ H L+ VLEPTYGI++YQEQVMQ AQ +GYTLGGAD+LRRAMGK Sbjct: 652 MHGG------DFEYLHPLLEGVLEPTYGIMVYQEQVMQAAQYCAGYTLGGADLLRRAMGK 705 Query: 715 KKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWL 774 KKPEEM KQR +F EGA K I+ A IFD +EKFAGYGFNKSH+AAYALV+YQT WL Sbjct: 706 KKPEEMVKQRQIFIEGASKKDIDEATANHIFDYMEKFAGYGFNKSHAAAYALVAYQTAWL 765 Query: 775 KAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYG 834 KAHYPAEF++AV+T++M NT+ VV L+D+C + L++LPP +N LY FH D+ IVYG Sbjct: 766 KAHYPAEFLSAVLTSEMQNTDNVVFLIDDCRKNNLEVLPPSVNMSLYQFHAIDEQTIVYG 825 Query: 835 IGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPH 894 +GAIKGVGE ++++I++R + G FR+LFD C R D KK+N+R LE LI SGA D LG Sbjct: 826 LGAIKGVGEAAMQSVIDSRAQEGPFRDLFDFCHRIDLKKINKRTLEALIRSGALDCLGID 885 Query: 895 RAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYAS-CQPWPEQVVLDGE 953 RA LM L +A++AA+Q G D+FG E E++++ + +PW ++V L GE Sbjct: 886 RADLMAQLPEAVQAAEQARSNRETGIMDLFG----EVEEVQRKPSKPVKPWADEVRLKGE 941 Query: 954 RETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNR 1013 ++TLGLYLTGHPI+ Y E++ +V ++ ++ PT RG AGLVV + NR Sbjct: 942 KDTLGLYLTGHPIDVYRNELKAFV-PCQINELTPTRRGVTTVFAGLVVD----IANFPNR 996 Query: 1014 IGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQV----SFDDFSGGLKMTARE 1069 + + TLDD + R+E+ + ++++++++ D+++++ G++ FD G L + Sbjct: 997 M-MMTLDDGTARIEISANHERFNRFKEIIQLDKVVVIEGEIYEREGFDRPMGRLT----K 1051 Query: 1070 VMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPH----RSGTIPVHLYYQRADAR 1125 ++E R+K A + I+LT L L+Q L P+ S IPV LY A Sbjct: 1052 AFSLNEIRQKRANSIKITLTAEHFSKSLSRDLQQILTPYCNVDMSAHIPVILYLDYPYAT 1111 Query: 1126 ARLRFGATWRVSPSDRLLNDLRGLIGSEQVELEF 1159 L G W+V+P D LL LR G E + +E+ Sbjct: 1112 TELHLGLNWKVAPLDELLAKLRDYFGKEALHIEY 1145 >UniRef50_C5V5V8 DNA polymerase III, alpha subunit n=2 Tax=Gallionellaceae RepID=C5V5V8_9PROT Length = 1204 Score = 1113 bits (2878), Expect = 0.0, Method: Compositional matrix adjust. Identities = 594/1216 (48%), Positives = 797/1216 (65%), Gaps = 76/1216 (6%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M P FVHLR+HS+YS+ DG+A+ V A A GMPALA+TD +N GLVKFY G Sbjct: 1 MPSPVFVHLRLHSEYSITDGMARIDEAVDAAIADGMPALALTDLSNFSGLVKFYKKTRGK 60 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 G+KP+ G D + + D L +L ++ GY L L+S+AY + R+W Sbjct: 61 GLKPVAGVDVFITNEADRDRPYRLLLLCQSSEGYLRLCRLLSRAYLSNQYRERAELRREW 120 Query: 121 LI-ELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEE 179 E EGLI LSG +GDVG +L+ GN A + F DRY++E+ R G DE Sbjct: 121 FKDEGTEGLIALSGAHLGDVGCALMSGNVAEARRYAQGWAALFEDRYYIEVQRAGFADEA 180 Query: 180 SYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQY 239 +Y+ AA LA LPVVAT+ V+F+ S+DF AHE RV I +G+ L+D +R + ++ QQY Sbjct: 181 AYVDAATALAAGLDLPVVATHPVQFLTSADFKAHEARVCIAEGYVLNDKRREKAFTAQQY 240 Query: 240 MRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKE 298 +++ EM ELFAD+PEAL N+VEIA+RCN+T+ LG+ LP FPT S +D+++ ++ Sbjct: 241 FKTQAEMSELFADLPEALQNSVEIARRCNLTLVLGKPRLPDFPTPSGESLDDFMLSESER 300 Query: 299 GLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSK------ 352 GL +R+AFL+PDE ER ++ P+Y ERL E+ I +MGFPGYFLIV +FI+W+K Sbjct: 301 GLADRMAFLYPDEAERAEKFPQYHERLLFEINTIIKMGFPGYFLIVADFIRWAKAYRSDA 360 Query: 353 -DNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKR 411 NGVPVGPGRGSGAGSLVAY L ITDLDPL ++LLFERFLNPERVSMPDFDVDFC + R Sbjct: 361 FPNGVPVGPGRGSGAGSLVAYCLLITDLDPLRYELLFERFLNPERVSMPDFDVDFCQDGR 420 Query: 412 DQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPD--PGM 469 + VI++V YG VSQI TFGTMA+KAVIRDVGRV+ PYG DR+SK IP + + Sbjct: 421 ELVIDYVKQKYGAACVSQIATFGTMASKAVIRDVGRVMEFPYGLCDRLSKAIPLEGVKPV 480 Query: 470 TLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLY 529 +L KA E EP++ I E++E V L+++A +LE +TRN G HAGGVVIAP K+TDF PLY Sbjct: 481 SLQKAREMEPEINAIAESEEGVPELLELAMRLEDLTRNVGMHAGGVVIAPGKLTDFCPLY 540 Query: 530 CDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKN--GEPP---- 583 C + G V+QFDK DVE GLVKFDFLGLRTLTII+WA+ I++ +A++ G P Sbjct: 541 CADGGASVVSQFDKDDVEAIGLVKFDFLGLRTLTIIDWAVRHIHRLQARDRKGLPRTTNE 600 Query: 584 -----------------------------LDIAAIPLDDKKSFDMLQRSETTAVFQLESR 614 I AIPLDDK S+D+L++ TTAVFQLESR Sbjct: 601 TTTELLREGSRIEDQTQVSTQSSVHNPQLFSIEAIPLDDKPSYDLLKKCNTTAVFQLESR 660 Query: 615 GMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLK 674 GMKDLIKRLQPD FED++ALVALFRPGPL+SGMVD+F+DRKHGR Y H L+ Sbjct: 661 GMKDLIKRLQPDTFEDIVALVALFRPGPLESGMVDDFVDRKHGRATADY-----FHPELE 715 Query: 675 PVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKN 734 L+PTYG+I+YQEQVMQI+Q++ GYTLGGADMLRRAMGKK P EMA+QR +F GA Sbjct: 716 ASLKPTYGVIVYQEQVMQISQIIGGYTLGGADMLRRAMGKKDPAEMARQRDIFVSGALNR 775 Query: 735 GINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNT 794 I+ +LA ++FDL+E FAGYGFNKSHSAAYALV+YQT +LKAH+PA FMAA ++ D+DNT Sbjct: 776 EIDKDLATRLFDLMEMFAGYGFNKSHSAAYALVAYQTAYLKAHHPAAFMAATLSGDLDNT 835 Query: 795 EKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARN 854 EKV + + G+ IL PD+NS Y F D+ I YG+GAIKG GE I +I++AR Sbjct: 836 EKVRTFYADTLQQGITILLPDVNSSGYAFSPTDEKTISYGLGAIKGTGEAAIASIVKARA 895 Query: 855 KGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAK 914 G F++LFD C R D + +NRR +E LI +GAFD + HRAALM S+ AL +ADQ A+ Sbjct: 896 TGP-FKDLFDFCRRVDKRAVNRRTIETLIRAGAFDSINDHRAALMASVDAALASADQQAR 954 Query: 915 AEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIE 974 +I Q +FG + IEQ + W + L E+ +LG+YL GHP +Y KE+ Sbjct: 955 --SINQDSLFGEDDADAVLIEQK-SDVPRWSLREQLAFEKVSLGIYLGGHPYQEYEKELT 1011 Query: 975 RYVGGVRLKDMHP-------------TERGKVITAAGLVVAARVMVTKRGNRIGICTLDD 1021 ++ VRL D+ P + RG + AG+V R+ T+RG R+ + TLDD Sbjct: 1012 NFI-KVRLGDLTPAFLGKNSGSGGYVSRRGVQVRLAGIVSGLRLQQTRRG-RMAVITLDD 1069 Query: 1022 RSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYA 1081 S ++E+ +F + +K +Q + +D +L+V G+ S D++SG ++++ E+ + +AR ++A Sbjct: 1070 GSAQIELTVFNEEYEKSRQWIVEDELLVVEGKASLDEYSGNIRVSGEELFNFAQARSRFA 1129 Query: 1082 RGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDR 1141 R L + + ++ + +L++ L+P G V + Y A +LR G W+V+ + Sbjct: 1130 RQLELH-CNSSVN---IAQLKEILKPWSGGACAVQINYNNEVAVCQLRLGTDWQVTLDEA 1185 Query: 1142 LLNDLRGLI--GSEQV 1155 L+ DL L+ G+ QV Sbjct: 1186 LMRDLGVLLQPGNMQV 1201 >UniRef50_B5EQR5 DNA polymerase III, alpha subunit n=4 Tax=Bacteria RepID=B5EQR5_ACIF5 Length = 1167 Score = 1095 bits (2831), Expect = 0.0, Method: Compositional matrix adjust. Identities = 580/1090 (53%), Positives = 759/1090 (69%), Gaps = 19/1090 (1%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M P+FVHL VHS+YS+ DG+ L ++ A GMPA+AITD NL LVKFY A G Sbjct: 2 MRTPQFVHLHVHSEYSLEDGIIPVKALARRCAERGMPAVAITDHGNLFALVKFYNAARGQ 61 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 G+KP++G++ V + L +L + TGY+NL+ L+S+AY G P ID W Sbjct: 62 GVKPLIGSEVWVHDVAEPERPVSLVLLCMDKTGYRNLSRLLSRAYLEGSRHGRPQIDVAW 121 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 180 L ++GLI LS G++GR+L R + + +Y FP+R++LE+ R G ++E+ Sbjct: 122 LEGSSDGLIALSAAGQGEIGRALQR-HPQQAESRARYYARLFPERFYLEVQRNGEAEQEA 180 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 + A V LAE LP+VATN+ F+D++DF A + R I GFTLDDP+RPR ++P+ + Sbjct: 181 LVQATVALAEKLDLPLVATNNAHFLDAADFAAFDARQCISAGFTLDDPRRPRRFTPEHRL 240 Query: 241 RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEG 299 EEM E FAD+PEA NTVEIA+RCN+ + LG Y LP +P + S ++YL A++G Sbjct: 241 PDPEEMRERFADLPEACDNTVEIARRCNMELVLGHYALPDYPIPANQSVDEYLHDAAQKG 300 Query: 300 LEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVG 359 L+ERL L + L Y ERL E+ VI QMGFPGYFLIV +FIQW+K+NGVPVG Sbjct: 301 LQERLQELRITGDATLP----YHERLLREVGVIQQMGFPGYFLIVADFIQWAKNNGVPVG 356 Query: 360 PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVA 419 PGRGSGAGSLVAYAL+ITDLDP+ LLFERFLNPERVSMPDFDVDFCM++RD+VI++VA Sbjct: 357 PGRGSGAGSLVAYALRITDLDPIGNGLLFERFLNPERVSMPDFDVDFCMDQRDRVIQYVA 416 Query: 420 DMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEP 479 D YGRD V QIITFGTM A+AV+RDVGRVLG PYGFVD+++KL+P D GMTLAKA E Sbjct: 417 DKYGRDRVGQIITFGTMKARAVVRDVGRVLGLPYGFVDQLAKLVPGDLGMTLAKALEESE 476 Query: 480 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCD-EEGKHPV 538 +L +++V+ L+D+A +LEG+ R+A HAGGVVI+P + D PL+ D EG V Sbjct: 477 ELRRRQAEEDDVRDLLDIALRLEGLPRHASTHAGGVVISPEPLADRLPLFNDGSEGGGNV 536 Query: 539 TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598 TQ DK DVE GLVKFDFLGLRTLTII+ A+++IN A G P+DI +PLDD +F Sbjct: 537 TQLDKDDVEKMGLVKFDFLGLRTLTIIDMAVKLINADAAAAGRAPVDIQQLPLDDAATFA 596 Query: 599 MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658 +L+ +ET AVFQLES GM+DL++RLQPD FED++ALVALFRPGPLQSGMVD+FI RKHG+ Sbjct: 597 LLKSTETAAVFQLESSGMRDLVRRLQPDTFEDIVALVALFRPGPLQSGMVDDFIARKHGK 656 Query: 659 EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718 +++Y H L P+L TYG+I+YQEQVMQ AQ L+GY+LGGAD+LRRAMGKKKPE Sbjct: 657 AQVTY-----LHPDLAPILRETYGVIVYQEQVMQSAQALAGYSLGGADLLRRAMGKKKPE 711 Query: 719 EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778 EMAKQRS+F EGA KNG+ A+ A IFDL+EKFA YGFNKSHSAAYALVSYQT +LKAHY Sbjct: 712 EMAKQRSIFLEGAHKNGLAADQAGAIFDLMEKFAEYGFNKSHSAAYALVSYQTAYLKAHY 771 Query: 779 PAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAI 838 P FM+AV+TADMD+T+KVV ++ EC RMGL+I PP + + F D I +G+GAI Sbjct: 772 PQFFMSAVLTADMDHTDKVVAMIAECARMGLRIAPPSVQHSVLEFRPEGDDHIRFGLGAI 831 Query: 839 KGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAAL 898 KG+G I+AI++AR +GG F LFDL R DT+K+NRR LE LI +GA D G RA+L Sbjct: 832 KGLGRAAIQAILDAR-RGGAFLNLFDLLCRVDTQKINRRALEALIRAGAMDDWGVSRASL 890 Query: 899 MNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLG 958 + S+ ++AA Q ++A Q +F +E ++ S + W L ERETLG Sbjct: 891 IASVDGCMEAAAQFQSSQASLQESLFS--GQEALRVAPPLVSAEAWSLTETLRQERETLG 948 Query: 959 LYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICT 1018 YL+GHP++ L++ +G + L D+ G + AGLVVA R TKRG+RI T Sbjct: 949 FYLSGHPMDS-LRDDLTALGTIPLGDV---AVGSTVLVAGLVVARRSTRTKRGDRIYFLT 1004 Query: 1019 LDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEARE 1078 LDD GRLEV++F + + ++ E + ++V G+V D +SGGL+++A ++D +ARE Sbjct: 1005 LDDGQGRLEVVVFGEVWARAGKIREGEEPVLVLGEVGEDSYSGGLRLSALRLLDTAQARE 1064 Query: 1079 KYARGLAISL 1088 + A L + L Sbjct: 1065 ELAAQLTLDL 1074 >UniRef50_C8ND72 DNA polymerase III, alpha subunit n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8ND72_9GAMM Length = 1177 Score = 1078 bits (2788), Expect = 0.0, Method: Compositional matrix adjust. Identities = 576/1183 (48%), Positives = 773/1183 (65%), Gaps = 38/1183 (3%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 HL +HS++S+ D + + +V A + G A+A+TD NL G +KFY AGIKPI Sbjct: 4 LTHLHIHSEFSLSDSILRVGEIVDFAKSQGAEAIALTDRNNLYGALKFYKKARAAGIKPI 63 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 +G D V+ D G + L +LA N G+ +L L+S AYQ G + + Sbjct: 64 LGCDLTVR-DSDGTD-NQLILLAQNLKGFIHLCELVSFAYQYDQDHQGVAVHIERFTPTQ 121 Query: 126 -EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHA 184 EGLI LSGG GD+ R L R ++ ++ AF++ FPDRY+L+L R G+P E Y Sbjct: 122 CEGLIALSGGIDGDLARFLRRRDAQGAEKRAAFWQGIFPDRYYLQLARHGQPGEAEYFDW 181 Query: 185 AVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEE 244 + G+ VATN F + D+D HE+RV I +G+ D KRPR ++ + + S+ Sbjct: 182 CRDAGRKLGIAAVATNLACFPTADDYDVHEVRVCISNGWLRADDKRPRYFTQKYHFTSDA 241 Query: 245 EMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGD-MSTEDYLVKRAKEGLEER 303 M E FAD P+ LANT +A RCN+ + LG+ +LP FP D ++ E +L+ AK GLE R Sbjct: 242 VMAERFADAPQILANTHAVAARCNLELTLGKNYLPDFPLPDGVNIETFLIDSAKSGLELR 301 Query: 304 LAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRG 363 LA LFPDE ER +R YDERL EL VINQMGFPGYFLIV +FIQW+KD+ +PVGPGRG Sbjct: 302 LAQLFPDEAERAAKRAPYDERLAIELGVINQMGFPGYFLIVADFIQWAKDHDIPVGPGRG 361 Query: 364 SGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYG 423 SGAGSLVAYALKITDLDPL +DL FERFLNPERVSMPDFDVDFCME+RD+VIE+V+ YG Sbjct: 362 SGAGSLVAYALKITDLDPLAYDLFFERFLNPERVSMPDFDVDFCMERRDEVIEYVSHKYG 421 Query: 424 RDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAF------EA 477 VSQI T GTMAAKAV+RDVGRVLG PY VD++ +PP G+TL A + Sbjct: 422 AQRVSQIATHGTMAAKAVLRDVGRVLGVPYPVVDKLVATVPPVLGITLPDALGRSTKSQD 481 Query: 478 EPQL-----PEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDE 532 +P+L E+YE DEE++ +ID+ +LEG+ RN GKHAGGVVIAPTK+TDF+ LY + Sbjct: 482 KPELRSEAMQELYEKDEEMRDIIDIGLQLEGLARNVGKHAGGVVIAPTKLTDFSALYSES 541 Query: 533 EGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLD 592 G TQFDK D+E GLVKFDFLGLRTLT+I+WAL IN RR + G+PPLDIA +PLD Sbjct: 542 AGAGIATQFDKDDIEAMGLVKFDFLGLRTLTVIDWALGHINARRTREGQPPLDIATLPLD 601 Query: 593 DKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFI 652 D +++ +LQ + TTAVFQLES GMK+LI++L+PD FED+IALVALFRPGPL SGMVD+FI Sbjct: 602 DPQTYALLQSTRTTAVFQLESSGMKELIRKLRPDTFEDIIALVALFRPGPLGSGMVDDFI 661 Query: 653 DRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAM 712 +RKHG E+ YP H L+ +L+ TYG+++YQEQVMQ+AQ L+ Y+LG AD LRRAM Sbjct: 662 NRKHGLAEVEYP-----HPDLEGILQTTYGVMVYQEQVMQVAQKLANYSLGEADNLRRAM 716 Query: 713 GKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTL 772 GKKK EEMA+ + +F A + G+ + A IFDL+ KFA YGFNKSHSAAYAL+SYQT Sbjct: 717 GKKKAEEMARNKDIFVSRAVERGVPEKQATDIFDLMAKFAEYGFNKSHSAAYALLSYQTA 776 Query: 773 WLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIV 832 WLKAHYPAE MAAV+T++++ +K+V ++E MGL ++PP IN Y F V++ GEI+ Sbjct: 777 WLKAHYPAELMAAVLTSEIEKIDKIVRFINEARDMGLTVIPPCINRSQYTFTVSERGEII 836 Query: 833 YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892 YG+GA+KGVGE I ++E R K G + L DLC R D KKLNR+ LE LI +G+FD + Sbjct: 837 YGLGAVKGVGEAAINILLEERAKNGDYTSLEDLCRRLDLKKLNRKTLETLIRAGSFDNIE 896 Query: 893 PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASC--QPWPEQVVL 950 P+R AL ++ A+K A+QH + GQ DMFG+ + S + W + L Sbjct: 897 PNRGALFAAVEQAIKLAEQHHRNRHQGQGDMFGLFGDSSRDQPPSLIMNPEEAWDLRQTL 956 Query: 951 DGERETLGLYLTGHPINQ---YLKEIERYVGGVRLKD-----MHPTERGKVITA--AGLV 1000 E++TLGL+L+ HPI++ L +I R +L++ PT RG I AG+V Sbjct: 957 AEEKQTLGLFLSAHPIDEARDTLLQISRGRNLAQLQENMENWQRPTRRGDSIEVILAGVV 1016 Query: 1001 VAARVMVTKR-GNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDF 1059 + AR MV+K+ GN + T+DDRSGR E+ +F A + Y+ L + D ILI+ G+ ++ + Sbjct: 1017 IEARSMVSKKNGNPMIFLTIDDRSGRQEIGVFGKAAEAYKDLCKADNILIIHGKADYNYY 1076 Query: 1060 SGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEP---HRSGTIPVH 1116 ++ A + D +AR + + L ++ + D + L+++L P I + Sbjct: 1077 KEEWRINAETIHDYYDARYELLQKLDFTVNAEALADNIWQTLQETLAPLEDTHGARISIT 1136 Query: 1117 LYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSEQVELEF 1159 L +A+ RL A +R+ D LL L+ L+ + QV + Sbjct: 1137 LQNTSINAQGRLHLPAAYRID-HDNLLR-LQTLLAAPQVRRHY 1177 >UniRef50_Q6FAL5 DNA polymerase III, alpha chain n=16 Tax=Acinetobacter RepID=Q6FAL5_ACIAD Length = 1187 Score = 1071 bits (2770), Expect = 0.0, Method: Compositional matrix adjust. Identities = 569/1173 (48%), Positives = 785/1173 (66%), Gaps = 47/1173 (4%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 +FVHL +H+++S+ + + + L+K A MPALA+TD +NL VKFY + GIKP Sbjct: 2 QFVHLGIHTEFSITESIVRIPDLIKAAVQDDMPALALTDLSNLHAAVKFYTSCLKKGIKP 61 Query: 65 IVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL 124 I+G+ L D +T+LA N G++ LT ++S+ + G + P + ++W++E Sbjct: 62 ILGSVVR-----LNDPEHRITLLAMTNDGWKGLTEIVSRGHIEGQQLSIPCVQKEWILEQ 116 Query: 125 NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHA 184 ++ +I+L G + DVG+ L N + + ++E F +R ++ L RT R EE Y+ Sbjct: 117 HQDIIVLLG-QHSDVGKMLCSSNPQKAEPLLQAWQEKFGNRVYIALTRTQRAGEEDYMVE 175 Query: 185 AVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEE 244 AV+LA + VVA NDV FI+ DFDAHE RV I DG+ L D +RPR YS +QY ++ Sbjct: 176 AVKLAAKYNIGVVAHNDVHFIERDDFDAHEARVCIADGYVLADHRRPRIYSSEQYFKTAS 235 Query: 245 EMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTED-YLVKRAKEGLEER 303 EM ELF+DIP A+ NT IA+RCNV+++LG YFLP +P D T D Y +KEGLEER Sbjct: 236 EMEELFSDIPSAIENTYYIAQRCNVSLQLGTYFLPDYPIPDGFTIDTYFEHLSKEGLEER 295 Query: 304 LAFLFP----DEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVG 359 L L+P D++ R+P YDER+E E+ +I +MGFPGYFLIVM+FIQW+K NGVPVG Sbjct: 296 LNHLYPIETRDQDWPEIRKP-YDERIEYEVGIILKMGFPGYFLIVMDFIQWAKSNGVPVG 354 Query: 360 PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVA 419 PGRGSGAGSLVAY+LKITDLDPL +DLLFERFLNPERVSMPDFDVDFC+ RD+VI++V+ Sbjct: 355 PGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDFCIAGRDRVIDYVS 414 Query: 420 DMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP-GMTLAKAFEAE 478 YGR+AVSQI TFGTMAAK IRDV RVLG YG DRISK++P P G+ L +A E E Sbjct: 415 RTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTKPLGVDLKQAIEME 474 Query: 479 PQLPEIYEA-----DEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEE 533 PQL +I +++ + +MA KLEG+TRN GKHAGGVVIAP KITD++ + CD + Sbjct: 475 PQLKDIVTNPSNPDNDDAAEIWEMALKLEGITRNTGKHAGGVVIAPGKITDYSAVLCDAD 534 Query: 534 GKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDD 593 G + V Q+DK DVE AGLVKFDFLGLR LT+I A++ INKR E PLDIA +PLDD Sbjct: 535 GTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAVQNINKR--IQSEIPLDIANVPLDD 592 Query: 594 KKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFID 653 K ++ + + TTAVFQ ES GMK ++K +P FE++IA V+L+RPGP+ ++ +FI Sbjct: 593 KDAYLVFADANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRPGPMD--LIPDFIH 650 Query: 654 RKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMG 713 R HG E ++ H L+ VLEPTYGI++YQEQVMQ AQ +GYTLGGAD+LRRAMG Sbjct: 651 RMHGGE------FEYLHPLLESVLEPTYGIMVYQEQVMQAAQFCAGYTLGGADLLRRAMG 704 Query: 714 KKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLW 773 KKKPEEM KQR +F +GA + I+ A IFD +EKFAGYGFNKSH+AAYALV+Y T W Sbjct: 705 KKKPEEMVKQRQIFIKGAAEKEIDEATANHIFDYMEKFAGYGFNKSHAAAYALVAYHTAW 764 Query: 774 LKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVY 833 LKAHYPAEFMAAV++++M NT+ +V L+D+C L++LPP +N LYHFH +D+ IVY Sbjct: 765 LKAHYPAEFMAAVLSSEMQNTDSIVFLIDDCRNNALEVLPPSVNMSLYHFHASDERTIVY 824 Query: 834 GIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGP 893 G+GAIKGVGE ++++I++R K G + +LFD C R D KK+N+R LE LI +GA D L Sbjct: 825 GLGAIKGVGEQAMQSVIDSRIKNGPYTDLFDFCHRIDLKKINKRTLEALIRAGALDCLQI 884 Query: 894 HRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYAS-CQPWPEQVVLDG 952 R++LM L +A++AA+Q + G D+FG E E++++ A +PW ++V L G Sbjct: 885 ERSSLMAQLPEAVQAAEQARQNRETGIMDLFG----EVEEVQRKPAKPVKPWSDEVRLKG 940 Query: 953 ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012 E++TLGLYLTGHPI+ Y E++ ++ +L ++ PT RG AGLV+ V N Sbjct: 941 EKDTLGLYLTGHPIDVYRPELKSFIPA-KLNEVTPTRRGVTTVFAGLVLD----VANFPN 995 Query: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAR--EV 1070 R+ + TLDD + R+EV + +++ ++ ++++++ G++ + G + AR + Sbjct: 996 RM-VITLDDGTARIEVSCNHERFQRFKDIVVVEQVVVIEGEIY--EREGFDRPMARLSKA 1052 Query: 1071 MDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPH----RSGTIPVHLYYQRADARA 1126 ++E R+K A + I + QI L + L+ + P IPV L ++ A A Sbjct: 1053 FSLNEIRQKRANHIRIQPAEEQISKTLAHDLQNIILPFCNVDMCQHIPVMLTLEQPYATA 1112 Query: 1127 RLRFGATWRVSPSDRLLNDLRGLIGSEQVELEF 1159 + G W+V+P D LL LR G + + +E+ Sbjct: 1113 EVHLGQNWKVAPLDELLIKLRDYFGKDAIYIEY 1145 >UniRef50_Q87EY0 DNA polymerase III subunit alpha n=22 Tax=Gammaproteobacteria RepID=DPO3A_XYLFT Length = 1193 Score = 1058 bits (2737), Expect = 0.0, Method: Compositional matrix adjust. Identities = 573/1170 (48%), Positives = 762/1170 (65%), Gaps = 82/1170 (7%) Query: 1 MSEPRFVHLRVHSDYSMIDGL--------------AKTAPLVKKAAALGMPALAITDFTN 46 MS FVHL +H+++S+ D AK A L+ +A LG+PALA+TD N Sbjct: 1 MSTSSFVHLHIHTEFSLADSTIRVPEKPEQAHPKKAKQANLLSRAVELGLPALAVTDLNN 60 Query: 47 LCGLVKFYGAGHGAGIKPIVGADFNVQCDLLGDELTH----LTVLAANNTGYQNLTLLIS 102 L L+KFY A GIKPI GAD LL E H +T+L ++ GY NL+ LIS Sbjct: 61 LFALIKFYKAAETVGIKPISGAD------LLIAEPEHPPWGMTLLCRDHAGYLNLSQLIS 114 Query: 103 KAYQRGYGAAGPI-IDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEH 161 + + G+ G + + DW+ + ++ L L G R G+ L +G + L ++ +A ++ Sbjct: 115 RGWLEGHRPEGGVAVHPDWVRDHHKNLFALIG-RHSLAGQLLAKGRADLAEQQLADWQHV 173 Query: 162 FPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHD 221 F D LEL RTGR EE + A+++A RG+PV+A+NDVRF+ SDF AHE RV I Sbjct: 174 FGDGLHLELTRTGRDGEEPFNQFALQVAGIRGIPVIASNDVRFLVQSDFLAHEARVCIAS 233 Query: 222 GFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF 281 G LDDPKRPR YS QQY+RS EEM LFADIP+AL NT +A+RCN+ +RLG YFLP + Sbjct: 234 GRMLDDPKRPRTYSEQQYLRSSEEMAALFADIPDALDNTRTLAQRCNIEMRLGTYFLPNY 293 Query: 282 PT-GDMSTEDYLVKRAKEGLEERLAF--LFPDEEERLKRRPEYDERLETELQVINQMGFP 338 P D + + ++ K++ EGLE RL L P + R +Y RLE EL I +MGF Sbjct: 294 PVPNDETLDSWIRKQSHEGLEARLLKHPLAPGQT-----REDYVTRLEFELDTIIKMGFS 348 Query: 339 GYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVS 398 GYFLIV +FIQW K G+P+GPGRGSGAGSLVA+AL ITDLDPL ++LLFERFLNPERVS Sbjct: 349 GYFLIVADFIQWGKQQGIPIGPGRGSGAGSLVAWALLITDLDPLPYNLLFERFLNPERVS 408 Query: 399 MPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDR 458 MPDFD+DFCME+RD+VI +VA YGR+ VSQIIT+GTMAAKAV+RDVGRVLG PYG VD Sbjct: 409 MPDFDIDFCMERRDEVISYVARKYGRERVSQIITYGTMAAKAVVRDVGRVLGFPYGLVDS 468 Query: 459 ISKLIPPDPGMTLAKAF-------EAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKH 511 ++KLIP G+TL A A +L + Y+A+E+V+ L+++AR+LE +TRNAGKH Sbjct: 469 VAKLIPSTLGITLKDAMGEGETNDNASAELIQRYQAEEDVQELLNLARQLEDLTRNAGKH 528 Query: 512 AGGVVIAPTKITDFAPLYCDEE----GKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINW 567 AGGVVIAP +T+F PL+ + + GK+PVTQFDK+DVE GLVKFDFLGLRTLTII+W Sbjct: 529 AGGVVIAPNPLTEFCPLFAEHDENGRGKNPVTQFDKNDVEEVGLVKFDFLGLRTLTIIDW 588 Query: 568 ALEMINKRRAKNGEPPLDIAAIPLDDKKSF-DMLQRSETTAVFQLESRGMKDLIKRLQPD 626 A++ INKR A+ P+DI A+PLDD ++ D+ T+AVFQ ES GM+ L+K +PD Sbjct: 589 AVKAINKRHARACIDPVDITALPLDDIPTYKDVFASGNTSAVFQFESSGMRRLLKDARPD 648 Query: 627 CFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILY 686 FED+IALV+L+RPGP+ ++ F RKHG +E YPD + K +L+ TYGI++Y Sbjct: 649 RFEDLIALVSLYRPGPMD--LIPEFTARKHGVQETIYPDPR-----TKNILKDTYGIMVY 701 Query: 687 QEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFD 746 QEQVMQ+AQ++ GY+LG AD+LRRAMGKK P EMAK R +F EGA K G++A A +IFD Sbjct: 702 QEQVMQMAQIVGGYSLGSADLLRRAMGKKVPAEMAKHREIFREGAAKGGMDAVKADEIFD 761 Query: 747 LVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWR 806 L+EKFAGYGFNKSH+AAYALVSYQT WLK HYPAEFMAA +++DMDNT+KVVG +DE Sbjct: 762 LMEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEARN 821 Query: 807 MGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLC 866 + LK+L P+IN Y F I YG+GAIKGVG+ EAI++ R G + L D C Sbjct: 822 LNLKVLRPNINHSAYMFEATHADTIQYGLGAIKGVGQSVCEAIVKERLHYGPYTSLLDFC 881 Query: 867 ARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGV 926 R + KLNRR LE +I +GA D LG +RA++M L + +KA +Q ++ GQ +FG Sbjct: 882 TRVTSAKLNRRALEAMIHAGALDELGKNRASVMLQLPEVIKATEQMSRERESGQNSLFGN 941 Query: 927 LAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMH 986 I+ C+ WP +L+GERETLGLY +GHP + Y K+++ VG D++ Sbjct: 942 ADPGTPVIQLDLPECEEWPLTRMLNGERETLGLYFSGHPFDPYRKQVKELVGC----DLN 997 Query: 987 PTERGKVITA-------------------AGLVVAARVMVTKRGNRIGICTLDDRSGRLE 1027 + +++ + AGLVV+ R ++G+ L+D GR+E Sbjct: 998 TSALERILGSQQRGNGEKRTWQPEVNTILAGLVVSVR----RKGDSQVFVQLEDGRGRIE 1053 Query: 1028 VMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAIS 1087 F+DAL ++ LL +DRILIV G + D+F+GG + R+ D + YA+ L + Sbjct: 1054 CSAFSDALAEFGHLLTRDRILIVKGGLREDEFNGGYSLRIRQCWDYAQLCTDYAQRLLLR 1113 Query: 1088 LTDRQIDDQLLNRLRQSLEPHRSGTIPVHL 1117 + R R+ L +R G P+ L Sbjct: 1114 VDLRT--SHAWERIDAILARYRPGNTPLRL 1141 >UniRef50_Q4FSI0 DNA polymerase III, alpha subunit n=6 Tax=Bacteria RepID=Q4FSI0_PSYA2 Length = 1247 Score = 1058 bits (2735), Expect = 0.0, Method: Compositional matrix adjust. Identities = 555/1142 (48%), Positives = 758/1142 (66%), Gaps = 60/1142 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL +HS+YS+ D + + PLVK AAA ALA+TD +NL VKFY A GAGIKPI Sbjct: 3 FVHLGIHSEYSITDSIVRIKPLVKAAAADNQRALALTDLSNLYATVKFYRACLGAGIKPI 62 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRG----YGAAGPIIDRDWL 121 +G++ ++ +E T LT+LA +N GYQN+T ++S + G P+I R + Sbjct: 63 IGSEV-----IMENEDTRLTLLAMDNEGYQNITRIVSLGFTEGRADPVNHGTPVIKRSHI 117 Query: 122 IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181 +E G+I+L + DVG++L+ DE + ++ F DR + + RT R E+++ Sbjct: 118 LEHGAGVIVLFTEK-SDVGQALVGSMPEKADELITEWQASFDDRLYFAIKRTNRTGEDAF 176 Query: 182 LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241 + AA+ +P++A NDVRF++ DFDAHE RV I + L D RP+ YS QY++ Sbjct: 177 IKAAIHSGAKHHIPIIAHNDVRFLEQDDFDAHEARVCIAGSYVLADQNRPQTYSDAQYLK 236 Query: 242 SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGD-MSTEDYLVKRAKEGL 300 ++ +M +LFADIP+ + NT+ +A RCNVT+ LG LP+FP + +TE + ++ GL Sbjct: 237 TQAQMQQLFADIPQVIDNTLRLATRCNVTLTLGINVLPEFPVPEGETTESFFRLESQRGL 296 Query: 301 EERLAFLFP-----DEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNG 355 E RL LFP D +++R YDERLE EL+VI MGFPGYFLIVM+FI+W+K NG Sbjct: 297 ENRLDKLFPVDARSDHWSDIRQR--YDERLEYELKVILSMGFPGYFLIVMDFIRWAKANG 354 Query: 356 VPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVI 415 VPVGPGRGSGAGSLVAYAL ITDLDP+ +DLLFERFLNPERVSMPDFD+DFC+E RD+VI Sbjct: 355 VPVGPGRGSGAGSLVAYALNITDLDPIHYDLLFERFLNPERVSMPDFDIDFCIEGRDRVI 414 Query: 416 EHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAF 475 ++VA YGR+AVSQIITFGTMAAKAV+RDV R Y ++SKLIP PG+TL++A Sbjct: 415 DYVAQTYGREAVSQIITFGTMAAKAVVRDVARAQSKSYFLASKMSKLIPKTPGITLSQAL 474 Query: 476 EAEPQLPEIYEAD-----EEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYC 530 E EPQL ++ E+ + +MA KLEG+ RN GKHAGGV+IAP KITDF+ +YC Sbjct: 475 EQEPQLKDLISNPDNMDYEDAIEVWEMAIKLEGICRNVGKHAGGVLIAPHKITDFSAIYC 534 Query: 531 DEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIP 590 D+EG H V+QFDK DVE GLVKFDFLGLR LT+I+ A+E INKRRAK G+ L + +P Sbjct: 535 DDEG-HRVSQFDKDDVEAVGLVKFDFLGLRNLTVISAAVENINKRRAKEGKEALVLEDLP 593 Query: 591 LDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDN 650 LDD K++ +LQ ++TTAVFQLES GMK + +LQP ED+IA+ AL+RPGPL +GMV+ Sbjct: 594 LDDAKAYKLLQDAKTTAVFQLESMGMKKYLAKLQPTNIEDVIAMCALYRPGPLDAGMVEM 653 Query: 651 FIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRR 710 +IDRKHGREE+ Y H +L+P+LE T G+I+YQEQVMQI+QV++GY+LGGADMLRR Sbjct: 654 YIDRKHGREEVIY-----DHPNLEPILENTNGVIVYQEQVMQISQVMAGYSLGGADMLRR 708 Query: 711 AMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQ 770 AMGKKKPEEMAKQR +F GA GI+ + +FDL+EKFAGYGFN+SHSAAY +++YQ Sbjct: 709 AMGKKKPEEMAKQRDIFVTGATAQGIDEATSGGVFDLMEKFAGYGFNRSHSAAYGVLAYQ 768 Query: 771 TLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECW-RMGLKILPPDINSGLYHFHVNDDG 829 T +LK +YPAEFMAAV+T+DM+NT+ VV +++C L ++ P +N +HF + Sbjct: 769 TAYLKQYYPAEFMAAVLTSDMNNTDNVVFFINDCRENFALTVVNPSVNRSEWHFVADTPT 828 Query: 830 EIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFD 889 I+YG+GAIKGVGEG +E+I+EAR + G F++L+D C R D KK+N+R LE LI +G FD Sbjct: 829 NIIYGLGAIKGVGEGAVESIVEARRREGPFKDLYDFCRRVDIKKVNKRTLEGLINAGCFD 888 Query: 890 RLGPH-------------RAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAEEPE 932 R ALM+ L A++AA+Q + IG D+F GV+A P Sbjct: 889 DFAATLRPDLPSDEAYEIRGALMSQLPSAVQAAEQDRQNREIGMMDLFGEMDGVVAAPPL 948 Query: 933 QIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGK 992 + W ++ L E+ TLGLYLTGHPI++Y E++RY G RL + T Sbjct: 949 VMTPELI----WGDKHRLKAEKNTLGLYLTGHPIDEYRDELKRYTSGARLDKLADTGYNG 1004 Query: 993 VITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSG 1052 AGL++ + G R + TLDD + RLEV + + ++ + L+ D ++I+ G Sbjct: 1005 SCYFAGLIID----IANFGTR-NVITLDDGTSRLEVSCYAERFNRVKDQLKIDEVVIIKG 1059 Query: 1053 QVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGT 1112 + D G L M + +AR ++ + ++I + I+ LL ++ L+ ++ Sbjct: 1060 SIRERD--GRLFARLDNAMSMVDARLRWLKKISIKVHGSDIN--LLTCMQPLLKSAQASI 1115 Query: 1113 IP 1114 IP Sbjct: 1116 IP 1117 >UniRef50_Q9JVX8 DNA polymerase III subunit alpha n=201 Tax=cellular organisms RepID=DPO3A_NEIMA Length = 1144 Score = 1048 bits (2709), Expect = 0.0, Method: Compositional matrix adjust. Identities = 560/1167 (47%), Positives = 758/1167 (64%), Gaps = 31/1167 (2%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M+EP ++ LR+H+++S+ DG+ + L+ KA G+PAL I+D N GLVKFY A A Sbjct: 1 MTEPTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSA 60 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAY-QRGYGAAGPIIDRD 119 GIKPI AD + D+ ++ N+ GY L+ L++ AY + ++ + Sbjct: 61 GIKPIGAADVRIGNPDAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKDRNVHHAELNPE 120 Query: 120 WLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTG-RPD 177 WL N GLI LSG G+VG +LL GN Y FPD ++LEL R RP+ Sbjct: 121 WLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQRLPERPE 180 Query: 178 EESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQ 237 E+ + +V+LAE GLPVVAT+ +F+ DF+AHE RV I G+ L D KRPR+++P Sbjct: 181 WEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKRPRDFTPS 240 Query: 238 QYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGD-MSTEDYLVKRA 296 Q+ E M E F+D+PEAL NTVEIAKRCN+ + LG+ FLP FPT D +S +DYLVK + Sbjct: 241 QFFIPPETMAERFSDLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLDDYLVKLS 300 Query: 297 KEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGV 356 EGL+ER+ L+PDE ER + PEY ERL+ EL +I QM FPGYFLIV +FI W+K +G Sbjct: 301 NEGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGC 360 Query: 357 PVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIE 416 PVGPGRGSGAGSLVAY+LKITDLDPL++ LLFERFLNPERVSMPDFDVDFC R +VIE Sbjct: 361 PVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQANRGRVIE 420 Query: 417 HVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIP--PDPGMTLAKA 474 +V + YG +AVSQI+TFGTM++KAVIRDVGRVL P+ D++SKLIP + + L A Sbjct: 421 YVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSKLIPLEANKPLGLDDA 480 Query: 475 FEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEG 534 +AEPQ+ E+ EA EE LI +A+KLE +TR G HAGGV+IAP KI+D++P+Y +E Sbjct: 481 MKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADES 539 Query: 535 KHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDK 594 PV+ +DK DVE GLVKFDFLGLR LTII A N + G+ +D+ IPLDD+ Sbjct: 540 ASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQ---NNIKNTTGDI-VDVGTIPLDDQ 595 Query: 595 KSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDR 654 ++ + + + TTAVFQ ES GMK ++K FE++IA V+L+RPGP+ + + +F+ R Sbjct: 596 TAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDN--IPDFVAR 653 Query: 655 KHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK 714 G+E Q+ H L+ +L PTYGI++YQEQVMQ AQ++ GY+LGGAD+LRRAMGK Sbjct: 654 MKGQE------FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGK 707 Query: 715 KKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWL 774 KKPEEM K R +FAEGA K GI+ E + +IF+ +EKFAGYGFNKSH+AAYAL+SYQT WL Sbjct: 708 KKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWL 767 Query: 775 KAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYG 834 KAHYPAEFMAA M++++DNT+++ D+C G++ LPPDIN Y F D +I Y Sbjct: 768 KAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMKIRYA 827 Query: 835 IGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPH 894 +GAIKG GE +E+I AR GG F L D C R + +NRR LE LI GAFD + P+ Sbjct: 828 LGAIKGTGEAAVESITSARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPN 887 Query: 895 RAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGER 954 RA L+ ++ A+ ADQ KA Q +F ++ + E + A W E L E+ Sbjct: 888 RAMLLANIDLAMNNADQ--KAANANQGGLFDMMEDAIEPVRLIDAPM--WSESEKLAEEK 943 Query: 955 ETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRI 1014 +G YL+GHP Y +E+ R + +L + P + + AG V A R M+ KRG +I Sbjct: 944 TVIGFYLSGHPFGPYAQEV-RQIAPQKLSKLKPQDS---VRLAGFVTAVRTMMGKRG-KI 998 Query: 1015 GICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSG--GLKMTAREVMD 1072 +L+D SG++E+M+ L+ L+ D++LI+ +VS DD+ G GL++ A +VM Sbjct: 999 AFVSLEDLSGQVEIMVGGQTLENCADCLKADQVLIIESKVSRDDYGGGDGLRILANQVMT 1058 Query: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGA 1132 + ARE+YAR L+++L +L+ L P + IP+ L Y A RL+ Sbjct: 1059 LQTARERYARSLSLALAPHHDIGELVQLLAAHQLPD-TPRIPLQLSYANEKASGRLQVPP 1117 Query: 1133 TWRVSPSDRLLNDLRGLIGSEQVELEF 1159 W V+PS L +L L+GS V + + Sbjct: 1118 KWTVTPSSALFGELETLLGSRSVRVNW 1144 >UniRef50_A5EV47 DNA polymerase III, alpha subunit n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EV47_DICNV Length = 1175 Score = 1047 bits (2708), Expect = 0.0, Method: Compositional matrix adjust. Identities = 560/1184 (47%), Positives = 765/1184 (64%), Gaps = 44/1184 (3%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 +V L VHS+YS+ D L + +V A + ++A+TD NL +KFY A IKPI Sbjct: 4 YVPLHVHSEYSLNDSLLRIHDIVAFAQTHDLTSIALTDRNNLYAAIKFYQCARRAKIKPI 63 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLI-EL 124 +G D +++ D +G ++ L +LA N G+++L L+S AY +D+ L E Sbjct: 64 LGCDLSIR-DEVG-QIHQLILLAQNALGFRHLCELVSFAYTHDQTPNEIAVDKTRLTAEQ 121 Query: 125 NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHA 184 +GLI LSGG GDVG+++ RG+ +C +++ F +R++L++ R G+ + + Sbjct: 122 CQGLIALSGGEEGDVGKAIARGDRKHALQCATHWQKIFSNRFYLQIARFGQTEPPLFSQN 181 Query: 185 AVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEE 244 E+ + + VATN F ++DFD HE RV I G T+D+PKR R ++PQ ++R+ + Sbjct: 182 LAEIGQKLRIAAVATNLACFKTAADFDYHEARVCIASGDTIDNPKRVRRFTPQHHLRAPQ 241 Query: 245 EMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGD-MSTEDYLVKRAKEGLEER 303 ++ ++FAD P+ L NT IA+RCNV + LG+++LP FP + + E YLV+ A+ GLEER Sbjct: 242 DLAQIFADAPQLLVNTELIAQRCNVVLSLGKHYLPDFPLPECIDIERYLVQEAERGLEER 301 Query: 304 LAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRG 363 L LFPD + R ++ Y ERL+TEL VIN+M FPGYFLIV +FIQW+K++ VPVGPGRG Sbjct: 302 LVQLFPDPQIRAEKTALYQERLQTELAVINRMQFPGYFLIVADFIQWAKNHDVPVGPGRG 361 Query: 364 SGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYG 423 SGAGSLVA+ LKIT+LDP+ +DLLFERFLNPERVSMPDFDVDFCM KRD VI +VAD YG Sbjct: 362 SGAGSLVAFCLKITELDPMAYDLLFERFLNPERVSMPDFDVDFCMNKRDDVIRYVADKYG 421 Query: 424 RDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKA--------- 474 D VSQI T GTMAAKAVIRDVGRVL PY VD+ISK++P G+TL A Sbjct: 422 HDKVSQIATHGTMAAKAVIRDVGRVLSLPYPVVDKISKMVPNTLGVTLPDALGKTEKSRT 481 Query: 475 ----FEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYC 530 F AE L + YE DEEVK LID+A LEG+ RN GKHAGGVVIAPT +TDF+ LYC Sbjct: 482 HPEFFSAE--LTKRYEEDEEVKYLIDIALPLEGLARNVGKHAGGVVIAPTTLTDFSALYC 539 Query: 531 DEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIP 590 + G VTQFDK D+E AGLVKFDFLGLRTLT+I+WA++ +N+ N + LDI I Sbjct: 540 EHAGSALVTQFDKEDIEAAGLVKFDFLGLRTLTVIDWAVQNVNQYAPANEK--LDIRQIR 597 Query: 591 LDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDN 650 DD+ +F +L+ +TTAVFQLES GMK+LI +LQPD FED+IALVALFRPGPLQSGMVD+ Sbjct: 598 DDDEATFQLLKSGKTTAVFQLESSGMKNLIAKLQPDNFEDLIALVALFRPGPLQSGMVDD 657 Query: 651 FIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRR 710 FI+RKHGR ++ YP H +L +L+ TYG+++YQEQVMQ+AQ+L+ Y+LG AD+LRR Sbjct: 658 FINRKHGRAKVVYP-----HPALAEILKNTYGVMVYQEQVMQVAQILAKYSLGEADLLRR 712 Query: 711 AMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQ 770 AMGKKKPEEMAKQ+ F A G++ ++A+ IFDL+ KFA YGFNKSHSAAYAL+SYQ Sbjct: 713 AMGKKKPEEMAKQKGTFVARASAGGVDEQVAIDIFDLMAKFAEYGFNKSHSAAYALLSYQ 772 Query: 771 TLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGE 830 T WLKAHYPA FMAAV+T++MD TEK+V L+DEC MGL+ILPP IN Y F +N GE Sbjct: 773 TAWLKAHYPAAFMAAVLTSEMDKTEKIVLLIDECHEMGLRILPPSINHSAYDFTINQQGE 832 Query: 831 IVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDR 890 I++G+GAIKGVG+ IE I+ R +GG F+ L DLC R D K L R+ LE LI +GAFD Sbjct: 833 ILFGLGAIKGVGQAVIEQILAERRRGGAFQSLTDLCQRLDLKTLKRKTLETLIYAGAFDL 892 Query: 891 LGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVL 950 + +R AL L ALK A+Q+ + + Q +MF +L + + W Q L Sbjct: 893 IEKNRGALFAVLPQALKLAEQYHQDKKNRQTNMFSLLDAAHCEAHLALNPENSWQPQQQL 952 Query: 951 DGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKV--------ITAAGLVVA 1002 E+ LGL+L+GHP Q E+ R + + ++ K GL+V Sbjct: 953 MWEKSVLGLFLSGHPA-QVAAEMIRPICPKNIAEIQHELNQKTPHQGEYHFFYLGGLLVD 1011 Query: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSF--DDFS 1060 R + +K+G T+DD SG++E+ + + L LE+D ++I + F ++ S Sbjct: 1012 KRNITSKKGKNFCFITIDDCSGKIEIAVPEELLQTENAALERDTLIIAQIKARFVVNEQS 1071 Query: 1061 GGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRL---RQSLEPHRSGTIPVH- 1116 + T + +D+AR + A + I + Q LN L R++ + + + ++ Sbjct: 1072 ENWRYTLAHIYTVDDARYQLATDVKIESEINALTPQFLNALASWRRADDDESTAGVTLYF 1131 Query: 1117 -LYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSEQVELEF 1159 L ++ A +R G +R + + DL GS+ + + + Sbjct: 1132 ALRLEQEAVAASIRLGGRYRFDRT--IFTDLAHHFGSQNIHMHY 1173 >UniRef50_B1XVK6 DNA polymerase III, alpha subunit n=21 Tax=Burkholderiales RepID=B1XVK6_POLNS Length = 1205 Score = 1001 bits (2589), Expect = 0.0, Method: Compositional matrix adjust. Identities = 547/1152 (47%), Positives = 753/1152 (65%), Gaps = 69/1152 (5%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M+ PRFVHLRVHS++S+ DG+ + V A GM ALAITD +NL GLV+FY A + Sbjct: 1 MALPRFVHLRVHSEFSITDGVVRIDDAVAAAVKDGMGALAITDLSNLFGLVRFYTAARSS 60 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 GIKPI GAD + D+ L +L N++GY NL L+S+A +D W Sbjct: 61 GIKPITGADVWISNPQDPDQPHRLLLLVQNHSGYLNLCELLSRASLDNQSRGRAEVDSAW 120 Query: 121 LIE-------------LNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYF 167 E L GLI LSG RMG+VG +LL G + YE+ FP ++ Sbjct: 121 FSEPAAKTEDKAAKRTLPYGLIALSGARMGEVGAALLAGQADQAKIVARRYEKLFPKSFY 180 Query: 168 LELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDD 227 +E+ R G P +E +L A LA LPVVAT+ V+F+ SDF AHE RV I +G L + Sbjct: 181 IEVQRGGNPQDERHLQLACHLASELDLPVVATHPVQFMQRSDFTAHEARVCIAEGELLGN 240 Query: 228 PKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTG-DM 286 P+R + ++ +QY ++EEM + FAD+P ALAN+VEIAKRCN+++ LG+ LP FPT + Sbjct: 241 PRRTKKFNEEQYFLTQEEMEKRFADLPVALANSVEIAKRCNLSLVLGQPRLPDFPTPPGI 300 Query: 287 STEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVME 346 + ++YL+ +++ GLE + FPD EER K Y ERL E++ I+QMGFPGYFLIV + Sbjct: 301 TLDEYLLAQSEVGLERHMERNFPDPEERAKEMARYHERLVFEVKTISQMGFPGYFLIVAD 360 Query: 347 FIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 406 FI W+K+NGVPVGPGRGSGAGSLVAY+L ITDLDPL ++LLFERFLNPERVSMPDFD+DF Sbjct: 361 FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 420 Query: 407 CMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPD 466 C RD+VI++V D YG+DAVSQI TFGTMAA+A IRDVGRVL Y FVD I+KL+P Sbjct: 421 CQHGRDRVIQYVKDKYGKDAVSQIATFGTMAARAAIRDVGRVLEQGYNFVDGIAKLVPNK 480 Query: 467 PG--MTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524 PG MT+ A + E QL E + ++EV+ L+ +A++LEG+TRN G HAGGV+IAP ++TD Sbjct: 481 PGQYMTIEMAKKKEKQLAEREKNEDEVRQLLSLAQQLEGMTRNVGMHAGGVLIAPGRLTD 540 Query: 525 FAPLYC----DEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNG 580 F PLY D++ ++QFDK DVE GLVKFDFLGL TLTI+ A I A Sbjct: 541 FCPLYTQESKDQDSSSVISQFDKDDVEAVGLVKFDFLGLTTLTILAAAERWIKALHADRR 600 Query: 581 EPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRP 640 + +I IPLDD+K+FD+L+R+ T AVFQLESRGM+ +++ +PD FED+IALVAL+RP Sbjct: 601 D--WNIGEIPLDDEKAFDVLKRANTVAVFQLESRGMQGMLREAKPDRFEDIIALVALYRP 658 Query: 641 GPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGY 700 GP+ ++ +FI+RKHGR+++ YPD + ++PVL TYGI++YQEQVMQ+AQ++ GY Sbjct: 659 GPMD--LIPDFIERKHGRQKVEYPDPR-----IEPVLRETYGIMVYQEQVMQMAQMIGGY 711 Query: 701 TLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSH 760 +LGGADMLRRAMGKKKPEEMA+ R +F++GA+ GI+ A +I+DL+E+FAGYGFNKSH Sbjct: 712 SLGGADMLRRAMGKKKPEEMAQHRKIFSDGAKAGGISEGKANEIYDLMERFAGYGFNKSH 771 Query: 761 SAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGL 820 +AAYAL++YQT WLKA+YPAEFMAA ++ MD+T+KV L D+C +++ PDIN+G+ Sbjct: 772 AAAYALLAYQTAWLKAYYPAEFMAANLSLAMDDTDKVKILYDDCLVNNIRVFSPDINTGV 831 Query: 821 YHFHV---------NDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDT 871 Y F + + YG+GA++G GE IE+I++AR GG F++LFD CAR D Sbjct: 832 YEFTPLRAPDAAPDSPISHVRYGLGAVRGTGEAAIESIVKARETGGPFKDLFDFCARVDR 891 Query: 872 KKLNRRVLEKLIMSGAFD-----------RLGPHRAALMNSLGDALKAADQHAKAEAIGQ 920 +++NRR +E L+ +GAFD L R+ L+ SL A +I Q Sbjct: 892 RQVNRRAIEALMRAGAFDDLYRDSVPAGGNLYDIRSTLLASL--ARAIEAAEQAEASIYQ 949 Query: 921 ADMFGVLAEE----PEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERY 976 +F V EE PE + + W E+ L E+ LGL LTGH + Y E + Sbjct: 950 VSLFEVAGEENRHLPELVREPV-----WSEKKRLQEEKTALGLCLTGHMFDAYRDETSHF 1004 Query: 977 VGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALD 1036 + + + GK AG++ +AR++ +RG R+ I T+DD + LEV L+++ + Sbjct: 1005 I----RQPLSKVTEGKDQLIAGIITSARMLTGQRG-RMMIATIDDGTAALEVTLYSEVYE 1059 Query: 1037 KYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQ 1096 + L++D +L+ V+ D FSGG+++ + VMDI AR ++A + + + D ID Sbjct: 1060 PNRSWLKEDELLVAKVNVTPDKFSGGMRIVSEAVMDITGARMRFAHNVHVCI-DNVID-- 1116 Query: 1097 LLNRLRQSLEPH 1108 + LR + P+ Sbjct: 1117 -IKMLRSQINPY 1127 >UniRef50_A1AX67 DNA polymerase III, alpha subunit n=2 Tax=sulfur-oxidizing symbionts RepID=A1AX67_RUTMC Length = 1144 Score = 983 bits (2540), Expect = 0.0, Method: Compositional matrix adjust. Identities = 508/1157 (43%), Positives = 748/1157 (64%), Gaps = 32/1157 (2%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M+ FVHL S++S+ + L + L++K +GM ++A+TD +NL VKFY A Sbjct: 1 MTNSNFVHLHCQSEFSVENSLIRIPKLIEKVQEIGMNSIALTDESNLFTAVKFYQKATIA 60 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 IKPI GA N++ D G E + +L + GY NL+ LIS +Y +G + + Sbjct: 61 NIKPIFGARINIK-DKEG-EFYSVLLLCQDYQGYLNLSELISLSYTQGRSFECVSVTQQQ 118 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 180 LI+ N+GLI+++ DV + L+ + F++ +RY+L + RT R +E Sbjct: 119 LIDHNQGLIMIATPIYSDVAKYLISNQMIEAKQKAEFWQTILVERYYLSVQRTSREFDEE 178 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 +LH V+LA + VVATNDV+F++ SDFDAHE R+ I G LDD +R +++S QQ++ Sbjct: 179 HLHLCVKLALELDIAVVATNDVQFLNESDFDAHEARICISQGGLLDDVRREKHFSNQQFL 238 Query: 241 RSEEEMCELFADIPEALANTVEIAKRCNVTVRL-GEYFLPQFPT-GDMSTEDYLVKRAKE 298 +S E+M ELF+D+PE L NT+EIAKRCNV +L + +LP FP D++ E + + ++ Sbjct: 239 KSSEQMHELFSDLPEILENTLEIAKRCNVHFKLFKKNYLPDFPVPKDLTIERFFCEESEH 298 Query: 299 GLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPV 358 GL +RL L D Y +RL+ EL VI QMGFPGYFLIV +FI+WSK+N +PV Sbjct: 299 GLVQRLQNLKVDT-------LVYYQRLKFELNVIIQMGFPGYFLIVADFIRWSKENDIPV 351 Query: 359 GPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHV 418 GPGRGSGAGSLVAY L IT++DP+ +LLFERFLNPERVSMPDFD+DFC ++RD+VI++V Sbjct: 352 GPGRGSGAGSLVAYVLGITNVDPIRHELLFERFLNPERVSMPDFDIDFCTDRRDEVIDYV 411 Query: 419 ADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFE-- 476 A YG VSQIIT+GTMAAK V+RDVGR+LGHPYGF D+ISK+IP D MTL KA Sbjct: 412 AKKYGYKKVSQIITYGTMAAKGVVRDVGRILGHPYGFSDKISKMIPNDLKMTLEKALSKP 471 Query: 477 ---AEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDE- 532 +L Y+++E V ALID++++LEG+ RN G HAGGVVIAP+KI+DF P+Y Sbjct: 472 EEGGSEELRARYDSEESVTALIDLSKQLEGLVRNVGTHAGGVVIAPSKISDFCPVYKGYG 531 Query: 533 EGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLD 592 E V+QFDK D+E GLVKFDFLGL LT+I+ +++I+ + N P+D+ A+PLD Sbjct: 532 ENDGVVSQFDKDDIEAIGLVKFDFLGLSNLTVIHKTVKLISAKGLSN--EPIDLDALPLD 589 Query: 593 DKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFI 652 DKK +++LQR +TT +FQLES GM+ +K+LQ D FED++A++AL+RPGPL +GMVD++I Sbjct: 590 DKKVYELLQRCDTTGIFQLESEGMRSYLKKLQADNFEDIVAMLALYRPGPLDAGMVDDYI 649 Query: 653 DRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAM 712 + KHG + V++ H L+ +L+PT G+ LYQEQVM+ AQV++GY+LGGAD+LRRAM Sbjct: 650 NVKHGAQ------VKYPHPMLEQILKPTNGVFLYQEQVMKSAQVMAGYSLGGADLLRRAM 703 Query: 713 GKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTL 772 GKKK EM++QRSVF +GA + GI+ + A +IFDL++KF+GYGFNKSHS AYA VSY T Sbjct: 704 GKKKDSEMSRQRSVFVKGAAEKGIDEKKANEIFDLIDKFSGYGFNKSHSVAYAYVSYHTA 763 Query: 773 WLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIV 832 WLK+H+PA FMAAV++ MDNT+++ + E +MGL + P++ Y F +ND+ + Sbjct: 764 WLKSHHPAPFMAAVLSGMMDNTDRISFTISEVRKMGLVVNGPNVCESNYEFSINDEKTVA 823 Query: 833 YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892 YG+GAIKGVG ++A++ RN G ++ LF+ C+R + + LN+R +E LI SGAFD LG Sbjct: 824 YGLGAIKGVGGALVDALVFERNTNGVYKSLFEFCSRIEKRYLNKRAIEALIYSGAFDVLG 883 Query: 893 PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952 RA+L+ + A++ A+Q GQ +F + E+ + E +Y S + + L Sbjct: 884 VDRASLIKTYPIAIRQAEQKQNDYFSGQKGLFSNI-EQHNEYEMNYLSASSFSFKERLQL 942 Query: 953 ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012 E+ LG Y HP ++Y ++ +++G + L K + L+ R TK G Sbjct: 943 EKSVLGYYFNDHPTDEYKTDL-KHIGAI-LPSKIVFRNNKDMRILALISELRYRATKSGG 1000 Query: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072 +I + T++D + L ++FT L L D ++++SG+++ +F ++ ++ + Sbjct: 1001 QIALITVEDGAKLLNAVIFTKTLGLVSDQLIVDEVVVISGKIN-KNFRDQWQVVVDKIEN 1059 Query: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGA 1132 I E + YARG + L + + ++ + L ++ G PV + Y + R + Sbjct: 1060 IGEVKMSYARGFEVLLNAKH--QSIFDKFVKVLLDYK-GNCPVKISYMTDNLRGSMLLNK 1116 Query: 1133 TWRVSPSDRLLNDLRGL 1149 + V+P+ +L++ + L Sbjct: 1117 AYLVAPNQQLIDAVNAL 1133 >UniRef50_D1KB28 DNA polymerase III, alpha subunit n=1 Tax=uncultured SUP05 cluster bacterium RepID=D1KB28_9GAMM Length = 1150 Score = 957 bits (2473), Expect = 0.0, Method: Compositional matrix adjust. Identities = 522/1174 (44%), Positives = 734/1174 (62%), Gaps = 54/1174 (4%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL HS+YS+ + L + L+ K LGM A+A+TD NL VKFY GIKPI Sbjct: 6 FVHLHCHSEYSVKNSLIRIPKLIDKTKDLGMKAIALTDVGNLFAAVKFYQKSISNGIKPI 65 Query: 66 VGADFNVQCDLLGDELTHLTVL--AANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIE 123 GA+ V+ D+ + +VL + GY NL+ LIS +Y G G I + L+ Sbjct: 66 FGAELTVK-----DKAQNFSVLLLCQDRQGYANLSELISLSYLHGQSVEGVSITTEQLVN 120 Query: 124 LNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLH 183 ++GLI+++ DV L+ + E V F+ F DR++L + RTGR ++E YLH Sbjct: 121 HHQGLIMIAPHTRSDVAHHLMANQALEAREKVQFWASVFTDRFYLSVQRTGRANDEKYLH 180 Query: 184 AAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSE 243 +EL G+P+VATNDV F+ +SD+ AHE R+ I G LDD +R + YS +QY++S Sbjct: 181 LCLELGLESGIPLVATNDVEFLVASDYQAHEARICISQGKLLDDARREKFYSAEQYLKSA 240 Query: 244 EEMCELFADIPEALANTVEIAKRCNVTVRL-GEYFLPQFPTGD-MSTEDYLVKRAKEGLE 301 +EM LF+D+P+ LAN+VEIAKRCN+ L + +LP FP + +S + + +K GL Sbjct: 241 DEMAALFSDLPQLLANSVEIAKRCNLHFELHKKNYLPNFPVPEGLSIAQFFEQESKAGLG 300 Query: 302 ERLAFLFPDEEERLK-RRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360 +RL E++K R YDERL EL VI QM FPGYFLIV +FI WS++N +PVGP Sbjct: 301 KRL--------EKIKANRKIYDERLTFELGVIVQMDFPGYFLIVADFIAWSRNNDIPVGP 352 Query: 361 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420 GRGSGAGSLVAYAL IT++DP++ +LLFERFLNPERVSMPDFD+DFC ++RD+VI +VA Sbjct: 353 GRGSGAGSLVAYALGITNVDPIKHELLFERFLNPERVSMPDFDIDFCTDRRDEVITYVAK 412 Query: 421 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQ 480 YG++ VSQIIT+G MAAK V+RDVGRVLGHPYGF DRISK IP D + L++A Q Sbjct: 413 KYGQEKVSQIITYGKMAAKGVVRDVGRVLGHPYGFSDRISKSIPNDLKINLSRALGIFDQ 472 Query: 481 --------------LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 L + Y+++E V ALID++ +LEG+ RN G HAGGV+IAP+KI+DF Sbjct: 473 KDSKEDKDKWYSEELKQRYDSEESVTALIDLSLELEGLVRNVGTHAGGVLIAPSKISDFC 532 Query: 527 PLYCDE-EGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLD 585 P+Y E V+QFD DVE GLVKFDFLGL LT+I+ ++MI+ + + +D Sbjct: 533 PIYKGPGESDGVVSQFDMKDVEALGLVKFDFLGLSNLTVIDKTVKMIHAKGL--SDELID 590 Query: 586 IAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQS 645 I A+ LDDK + +LQRS+TT +FQLES GM+ +K+L+ D FED++A++AL+RPGPL + Sbjct: 591 IDALSLDDKAVYKLLQRSDTTGIFQLESDGMRGYLKKLKADSFEDIVAMLALYRPGPLGA 650 Query: 646 GMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGA 705 GMVD++I+ KHG D ++ H L+ +L+PT G+ LYQEQVM+ AQV++GY+LGGA Sbjct: 651 GMVDDYINVKHGE------DAKYPHPMLEEILKPTNGVFLYQEQVMKSAQVMAGYSLGGA 704 Query: 706 DMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYA 765 D+LRRAMGKK EM KQR VF +GA K I E A +IFDL++KF+GYGFNKSHS AYA Sbjct: 705 DLLRRAMGKKIASEMEKQRDVFVKGAAKKKIKKEKANEIFDLIDKFSGYGFNKSHSVAYA 764 Query: 766 LVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHV 825 +SYQT WLKAHYPA FMA+V++ MD+T+K+ + E MGL + P++ Y F + Sbjct: 765 YISYQTAWLKAHYPAAFMASVLSDKMDDTDKIAFTIGEVQNMGLIVNGPNVCESDYEFSI 824 Query: 826 NDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMS 885 DD IVYG+GAIKGVGE ++ ++ R GG +++LF+ CAR + K LN+R +E LI S Sbjct: 825 KDDKTIVYGLGAIKGVGEALVQTLVAEREAGGEYKDLFEFCARIEKKSLNKRAIEALIYS 884 Query: 886 GAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWP 945 GAFD G RA+L+ + A+K A+Q + GQ +F + E E E SY C + Sbjct: 885 GAFDVFGVDRASLLKTYPKAVKQAEQRQNDQTNGQNTLFNSIQEHAE-YELSYDPCPRFS 943 Query: 946 EQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARV 1005 + L E+ +G Y HP ++Y +++R GV L K + L+ R Sbjct: 944 FKERLKLEKSVMGYYFYDHPTDEYKDDLKRI--GVTLPKDTVLRNNKEVRVLALISELRY 1001 Query: 1006 MVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFD-DFSGGLK 1064 + T+ G+++ ++D S +L ++F AL L + I+++S ++ + F + Sbjct: 1002 ITTRSGDQMASIIIEDGSTKLSAVIFPRALGPLSDKLIANEIVVISAKIKKNKKFGDEYQ 1061 Query: 1065 MTAREVMDIDEAREKYARGLAISLTDRQIDDQ-LLNRLRQSLEPHRSGTIPVHLYYQRAD 1123 + E+ D + + + I L +++ Q L N+L L H G PV YQ + Sbjct: 1062 LIVDEIDSFDS----FFKSVEIKL---KVEHQTLFNQLSDVLHEHH-GQCPVKFLYQYDN 1113 Query: 1124 ARARLRFGATWRVSPSDRLLNDLRGLIGSEQVEL 1157 +L ++ VSP +L +L L+G E+ Sbjct: 1114 LEGQLLLPQSYFVSPKQQLSEELDDLLGDRVSEI 1147 >UniRef50_A0LCM6 DNA polymerase III, alpha subunit n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LCM6_MAGSM Length = 1195 Score = 950 bits (2456), Expect = 0.0, Method: Compositional matrix adjust. Identities = 553/1185 (46%), Positives = 747/1185 (63%), Gaps = 58/1185 (4%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL +H+ YS++ + +++A +L MPALA+TD NL G ++FY AGIKP+ Sbjct: 5 FVHLHLHTGYSLLTSTVRLKQAIERAQSLQMPALALTDQGNLFGAIQFYSGCLKAGIKPL 64 Query: 66 VGADFNVQCDLLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDR 118 +GA + D E + +L N G++NL LI+K + G P ID Sbjct: 65 LGAQLYLVPDHTNKEERVDKEVRDQVILLCRNEEGWKNLMRLIAKGHLDGSHGL-PRIDL 123 Query: 119 DWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPD-----RYFLELIRT 173 L + + GL+ LS G G VGR L + A + A F D + LEL R Sbjct: 124 PLLKQHSAGLLALSAGAKGAVGRLLAQERPAEAEAAAAELAAIFGDDGQMPNFHLELQRH 183 Query: 174 GRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRN 233 G P EE + V LA+ LP+VA+ D+ ++D D +A + + TL + RPR Sbjct: 184 GEPGEERLIQQTVVLAQKLNLPIVASCDIHYMDPEDANARDALYCVGAVRTLYEENRPR- 242 Query: 234 YSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF--PTGDMSTEDY 291 S + + EM E FAD+PEAL NT IA RCN+ ++LG LP F P G + E Sbjct: 243 LSDRYAFATPAEMAERFADLPEALENTRRIAMRCNLQLKLGTPMLPDFALPPGQ-TLEGE 301 Query: 292 LVKRAKEGLEERLA-FLFP--DEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFI 348 + +++ GLEERL+ ++ P E + R Y +RL EL +INQMGFPGYFLIV +FI Sbjct: 302 MRTQSEAGLEERLSKYVLPRFPAAEHAELRQRYHDRLTYELGIINQMGFPGYFLIVSDFI 361 Query: 349 QWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCM 408 +W KD+ +PVGPGRGSGAGSLVA++L ITDLDP+ + LLFERFLNPERVSMPDFDVDFCM Sbjct: 362 KWGKDHHIPVGPGRGSGAGSLVAWSLSITDLDPIRYTLLFERFLNPERVSMPDFDVDFCM 421 Query: 409 EKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG 468 ++R++VI +V YG D V+QIITFGTM AKAVIRDVGRVL PYG VD+I+KL+P G Sbjct: 422 DRREEVIGYVQQKYGEDRVAQIITFGTMQAKAVIRDVGRVLEFPYGRVDKIAKLVPNVLG 481 Query: 469 MTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPL 528 +TL +A E EP+L ++ E +EEV LI++A LEG R+ G HA GVVI+ +TD PL Sbjct: 482 ITLKEALEQEPRLRDMMEDEEEVGHLINLALALEGSPRSCGTHAAGVVISNGPLTDTVPL 541 Query: 529 YCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGE-----PP 583 Y D PVTQF+ DVE AGLVKFDFLGL+TLT+I+ L+++N RRA+ GE P Sbjct: 542 YRDPRSSMPVTQFNMGDVEKAGLVKFDFLGLKTLTVIDNTLKIVNARRAQEGERAEDRVP 601 Query: 584 LDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPL 643 +DIAAI ++D+++F +L T VFQLES GM++++K+L PD FED+IALVAL+RPGPL Sbjct: 602 IDIAAIDIEDERAFRLLMDGRTKGVFQLESSGMREILKKLAPDTFEDIIALVALYRPGPL 661 Query: 644 QSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLG 703 SGMVD+FI RKHGR + YP Q L+P+L TYG+ILYQEQVM+IAQVL+GY+LG Sbjct: 662 GSGMVDDFIARKHGRAVVEYPLPQ-----LEPILRETYGVILYQEQVMKIAQVLAGYSLG 716 Query: 704 GADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAA 763 AD+LRRAMGKKKPEEMAKQRS+F +GA+ I+ E A IFDL+EKFAGYGFNKSHSAA Sbjct: 717 AADLLRRAMGKKKPEEMAKQRSIFMDGAKAQQIDPEKAGYIFDLMEKFAGYGFNKSHSAA 776 Query: 764 YALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHF 823 YAL+SYQT WLKAHYP FMAA ++AD++NT+KVV V EC M +++LPPD+N F Sbjct: 777 YALISYQTAWLKAHYPVAFMAATLSADINNTDKVVNFVRECHDMSVQVLPPDVNRSAVIF 836 Query: 824 HVN----DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVL 879 V D+ + +G+ AIK VGE P+ A+++AR +GG F L DLC RT+ LNRR L Sbjct: 837 SVQPGAGDEDAVRFGLAAIKNVGEAPMAALVKAREEGGPFASLLDLCQRTEGGNLNRRTL 896 Query: 880 EKLIMSGAFDRLGP-HRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSY 938 E LI +GA D LG +RAAL+++L +AL QH K + +G ++FG EE E E + Sbjct: 897 ENLIKAGACDGLGKGNRAALLSALPEALNRGTQHQKDQKLGFMNLFG--DEEAENSESTA 954 Query: 939 ASCQP----WPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMH----PTER 990 P WPE+ L+ E+E LG Y++ HP+ +Y E+ Y G + L ++ PT + Sbjct: 955 NWKLPEVPDWPEEERLEREKEALGFYISSHPLRKYEAEMHDY-GLMSLSELREKYGPTSQ 1013 Query: 991 ------GKV-ITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLE 1043 G+V + G+VV ++ TK+G+R+ TL+D G++E ++F DA +++LE Sbjct: 1014 EPMGNDGRVSVRFTGVVVERKLHRTKKGDRMLFVTLEDMLGQMEGVVFPDAYVANREVLE 1073 Query: 1044 KDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQ 1103 ++ LI GQ D +K+ + ++ R R L + + + L+ L Sbjct: 1074 EEGPLIFEGQAEVRDEE--VKVAIHSAVTLNNYRRHACRFLRVEVPAGLLRGGGLDELMA 1131 Query: 1104 SLEPH--RSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDL 1146 L+PH G + L + A AR L V PSD +L+ L Sbjct: 1132 LLQPHIGVDGCRTI-LVVRMAKARVTLELTLPGLVVPSDGVLDTL 1175 >UniRef50_A1AQQ6 DNA polymerase III, alpha subunit n=12 Tax=Deltaproteobacteria RepID=A1AQQ6_PELPD Length = 1184 Score = 926 bits (2394), Expect = 0.0, Method: Compositional matrix adjust. Identities = 506/1195 (42%), Positives = 739/1195 (61%), Gaps = 67/1195 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL VH+ YS++DG + L+ KA A MPALAITD N+ G V+FY AGIKP+ Sbjct: 15 FVHLHVHTQYSLLDGAIRLEDLIAKAKAHNMPALAITDHGNMFGAVEFYLKCKKAGIKPL 74 Query: 66 VGADFNVQCDL---------LGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPII 116 +G + + D + + HL +L N GY+NL+ L S Y+ G+ P I Sbjct: 75 IGCEVYIAPDSRFSRESTRGISEAAYHLILLCENMQGYRNLSYLTSAGYKEGF-YYRPRI 133 Query: 117 DRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRP 176 DR+ L E +EGLI LS G+V R E +Y + FPDRY++EL P Sbjct: 134 DRELLQEHSEGLIALSACLKGEVAMQCFRDRMDDALETARWYSQLFPDRYYIELQENTLP 193 Query: 177 DEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSP 236 +++ +E+A LP+VATND +++ D AHE+ + I G T+ DP + + Sbjct: 194 EQDVVNKRLMEVAATLQLPLVATNDCHYLNREDARAHEVLLCIQTGKTMSDPSHMKFSAE 253 Query: 237 QQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRL--GEYFLPQF-PTGDMSTEDYLV 293 + Y++S EEM F PEA++NT++IA RC++ + L GEY P F P + +D L Sbjct: 254 EFYVKSPEEMVAAFGYAPEAVSNTLKIADRCDLKLPLDTGEYHFPHFDPPAGKNHDDMLE 313 Query: 294 KRAKEGLEERLAFL---FPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQW 350 + A +GL+ER+ + +PD L+RR Y ERL+ EL+ I +M FP YFLIV +FI W Sbjct: 314 ELAVQGLKERMVTILAKYPDMS--LERRQAYFERLQIELKCIREMQFPAYFLIVSDFITW 371 Query: 351 SKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEK 410 +K+ G+PVGPGRGS AGSLVAYA++ITDLDPL ++LLFERFLNPER++MPD DVDFC ++ Sbjct: 372 AKNKGIPVGPGRGSAAGSLVAYAIRITDLDPLPYNLLFERFLNPERITMPDIDVDFCQDR 431 Query: 411 RDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMT 470 R++VI++V + YGR+ V QIITFGTM AKAV+RDVGR L YG VDRI+KLIP D MT Sbjct: 432 REEVIQYVIEKYGRERVCQIITFGTMKAKAVVRDVGRALNMTYGDVDRIAKLIPDDLKMT 491 Query: 471 LAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYC 530 LAKA + EPQL E+ E D +V+ L+D A LEG+TR+A HA GVV+AP ++ +F P+Y Sbjct: 492 LAKALKQEPQLNEMAERDPQVRDLLDTALCLEGLTRHASTHAAGVVVAPRQLEEFLPVYK 551 Query: 531 DEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIP 590 D++ TQ+ VE GLVKFDFLGL+ LT+I A+ ++ + +P DI + Sbjct: 552 DQKTGSINTQYSMKYVEMVGLVKFDFLGLKNLTVIENAVHLVRAGK----DPDFDITRLR 607 Query: 591 LDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDN 650 DD +S+D++ TT +FQLES GMK+++ +L+P CFED+IA AL+RPGPL GMVD Sbjct: 608 DDDSESYDLISSGNTTGIFQLESSGMKEMLVKLKPSCFEDVIAACALYRPGPLGCGMVDE 667 Query: 651 FIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRR 710 FI+RKHGR+++ Y Q L+P+L+ TYG+I+YQEQVMQI++ L+GY+LG AD+LRR Sbjct: 668 FIERKHGRQKVVYDLPQ-----LEPILKDTYGVIVYQEQVMQISRTLAGYSLGRADLLRR 722 Query: 711 AMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQ 770 AMGKK P MAK++ F EGA+ GI+ + A IFD + KFA YGFNKSHSAAYAL++YQ Sbjct: 723 AMGKKDPAVMAKEKEPFLEGAKAQGIDPKKAEAIFDQMAKFAEYGFNKSHSAAYALIAYQ 782 Query: 771 TLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGE 830 T WLK+HYP EF+AA++T DMD+T+KV+ +++C G+++LPPD+N F V + Sbjct: 783 TAWLKSHYPVEFLAALLTCDMDSTDKVIKNINDCREQGIEVLPPDVNKSGLTFTVVGNS- 841 Query: 831 IVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDR 890 + +G+GA+KGVG G +EAI+EAR G F++++D C R D ++ N++VLE LI GAFD Sbjct: 842 MRFGLGAVKGVGTGAVEAILEARQDGP-FKDVYDFCERVDMRRSNKKVLEALIKCGAFDS 900 Query: 891 LGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ------PW 944 RAA+M L A+ + + A Q +FG +++ +S + W Sbjct: 901 TNAPRAAMMEGLETAMNFGQRIQQERASAQVSLFG-----DDEVARSGGNGHRLPDVPEW 955 Query: 945 PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004 ++ L E+E LG +TGHP+++Y+ +I+R + V + + G I G+V + + Sbjct: 956 HDKEKLALEKEALGFLITGHPLDRYVDDIKR-LNCVEISRLTEQADGGEIRVCGIVSSLK 1014 Query: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLK 1064 + TK+G+R+G T++D +G +EV +F+D LL+ D L++ G++ + G K Sbjct: 1015 EITTKKGDRMGFVTIEDLTGSVEVTVFSDIYTSAVSLLKGDDPLLIDGKLERGE--KGAK 1072 Query: 1065 MTAR------------------EVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLE 1106 + R ++ + + R + + + +L + + L L+ +E Sbjct: 1073 ILVRGQSEGASEWQLKQRGPAGDIRHLLDVRAQSTKRVVFTLLTDETPPEHLEVLKGIIE 1132 Query: 1107 PHRSGTIPVHLYY---QRADARARLRFGATWRVSPSDRLLNDLRGLIGSEQVELE 1158 H+ G++P + + QR +R+ L + V+ SD L ++ L G E Sbjct: 1133 RHQ-GSVPTEIQFLIPQR--SRSTLALPESMNVAASDDLRLEVERLFGYNAASFE 1184 >UniRef50_B5E8T0 DNA polymerase III, alpha subunit n=6 Tax=Deltaproteobacteria RepID=B5E8T0_GEOBB Length = 1156 Score = 920 bits (2378), Expect = 0.0, Method: Compositional matrix adjust. Identities = 499/1184 (42%), Positives = 732/1184 (61%), Gaps = 54/1184 (4%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M FVHL +HS YS++DG + L+KK MPA+A+TD N+ G ++FY Sbjct: 1 MDSTNFVHLHLHSQYSLLDGAIRIGDLLKKVKECHMPAVAMTDHGNMFGTLEFYLKCKDK 60 Query: 61 GIKPIVGADFNV--QCDLLGDELT--------HLTVLAANNTGYQNLTLLISKAYQRGYG 110 G+KPI+G++ + Q L + HL +L N TG++NL+ L+S Y+ G+ Sbjct: 61 GVKPILGSEVYIAPQDRFLKQAPSSPGQASSYHLILLCENMTGFKNLSYLVSAGYKEGF- 119 Query: 111 AAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170 P ID++ L++ EGLI+LS G+V R ++Y E+FP Y++EL Sbjct: 120 YRRPRIDKELLLKHKEGLIVLSACLQGEVAYLAGRNKMDEARAAASWYAENFPGSYYIEL 179 Query: 171 IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230 P+++ +E+A LP+VATND +++ D AHEI + I G T+ DP Sbjct: 180 QENKLPEQDIANRRLMEIAREMDLPLVATNDCHYLNREDARAHEILLCIQTGKTMSDPTH 239 Query: 231 PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTED 290 + Y+++ +EM + F PEA+ NTV+IA+RCN+ Y+ P + + T D Sbjct: 240 MAFSVDEFYVKTPQEMAQAFHYAPEAIENTVKIAERCNLEFDFKTYYFPAYEAPEGETLD 299 Query: 291 YLVKR-AKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQ 349 ++R A GL ERL + ++ Y RL EL I QMGFPGYFLIV +FI Sbjct: 300 QQLEREATVGLVERLKKIRIKYNLTEEQEQAYHARLRIELDCIKQMGFPGYFLIVADFIN 359 Query: 350 WSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCME 409 W+KD+G+PVGPGRGS AGSLVA+ ++ITD+DP+ ++LLFERFLNPER+SMPD DVDFC + Sbjct: 360 WAKDHGIPVGPGRGSAAGSLVAFCIRITDIDPMPYNLLFERFLNPERISMPDIDVDFCQD 419 Query: 410 KRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGM 469 +R++VI+++ + YGR+ V QIITFGTMAA+ VIRDVGR L +G VDRI+KL+P G+ Sbjct: 420 RREEVIQYMVEKYGREKVCQIITFGTMAARGVIRDVGRALDLTFGEVDRIAKLVPEVLGI 479 Query: 470 TLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLY 529 TL KA E EP+L E+ AD +VK ++ +A +LEG+ R+A HA G+V+AP ++ +F P+Y Sbjct: 480 TLDKALEQEPKLKELMAADPKVKEVMTVALRLEGLARHASTHAAGLVVAPRQMEEFCPVY 539 Query: 530 CDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNG-EPPLDIAA 588 D++ TQ+ VE GLVKFDFLGL+ LT+I+ A + I +NG +P DI Sbjct: 540 KDQKTGSLTTQYSMKYVEKIGLVKFDFLGLKNLTVIDNACKHI-----RNGKDPNFDITL 594 Query: 589 IPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMV 648 + DD++S+ +LQ TT VFQLES GMK+L+ +L+P CFED+IA+ AL+RPGPL SGMV Sbjct: 595 LRDDDEESYKLLQAGNTTGVFQLESSGMKELLVKLKPSCFEDIIAVCALYRPGPLGSGMV 654 Query: 649 DNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADML 708 D+FI+RKHGR++ Y Q L+PVL+ TYG+I+YQEQVMQI++ L+GY+LGGAD+L Sbjct: 655 DDFIERKHGRKQTVYDLPQ-----LEPVLKDTYGVIVYQEQVMQISRSLAGYSLGGADLL 709 Query: 709 RRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVS 768 RRAMGKK E+MAK+R F EG+EK G++ + IFDL+ KFA YGFNKSHSAAYALV+ Sbjct: 710 RRAMGKKDAEQMAKERDKFLEGSEKLGLDGKKCAAIFDLMAKFAEYGFNKSHSAAYALVA 769 Query: 769 YQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDD 828 YQT +LKAHYP EFMAA++T DM NT+KV+ + +C MG+++LPPDIN F V D Sbjct: 770 YQTAFLKAHYPVEFMAALLTEDMGNTDKVIKSIGDCREMGIEVLPPDINESDRSFRVLDK 829 Query: 829 GEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAF 888 + +G+GA+K VGEG IEAIIEAR F++LFD C R D +++N+RV+E LI GAF Sbjct: 830 A-MRFGLGAVKNVGEGAIEAIIEARGDEP-FKDLFDFCERVDLRRVNKRVIEALIKCGAF 887 Query: 889 DRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGV-------------LAEEPEQIE 935 D G R+ LM L DA A + + QA +FG L E PE Sbjct: 888 DCTGAKRSQLMAGLEDAASAGQRVQQERESAQASLFGAAEIVRGANGGGNRLPEIPE--- 944 Query: 936 QSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVIT 995 W E+ L E+E +G ++TGHP+++Y+ ++ R+ V + + + Sbjct: 945 --------WDEKYRLGCEKEAIGFFITGHPLDRYVADMRRF-SSVDCSTILDAKEKSEVR 995 Query: 996 AAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVS 1055 G+ + + ++TK+G+R+ L+D G +EV++F + K ++L D + V+G V Sbjct: 996 ICGVPASVKELITKKGDRMAFLALEDLVGSVEVVVFPETYAKCSEVLRGDDPIHVTGTVE 1055 Query: 1056 FDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIP- 1114 + G K+ A +++ + + E+ R + ++ +++D+ L L+ + ++ Sbjct: 1056 LSE--KGAKVMASDIVLLRDLVERETRKVNFTIDAKEVDEGKLKTLKDIISRYQGICRSF 1113 Query: 1115 VHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSEQVELE 1158 +HL + + +R ++ ++VS S+ L ++ L G V E Sbjct: 1114 LHLDIENS-SRVTIKLPDVYKVSASEELTVEVSNLFGYNAVSFE 1156 >UniRef50_B0TZK7 DNA-directed DNA polymerase n=16 Tax=Francisella RepID=B0TZK7_FRAP2 Length = 1159 Score = 920 bits (2377), Expect = 0.0, Method: Compositional matrix adjust. Identities = 493/1125 (43%), Positives = 719/1125 (63%), Gaps = 37/1125 (3%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F HLR+H+ YS++D + L +A + A+A+TD NL VKFY G+KPI Sbjct: 2 FSHLRIHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALSNGVKPI 61 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRG--YGAAGPIIDRDWLIE 123 G + + + + L +LA NN GYQN+ L+SKAYQ +G+ P+I +DWL Sbjct: 62 FGVELKIDTEF---GVCDLVLLAENNQGYQNIVNLVSKAYQEADRFGSI-PLIPKDWLKN 117 Query: 124 LN-EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRTGRPDEESY 181 +N +I L+GG+ G++G+++L + V+E ++ F D Y +E+ + +E Y Sbjct: 118 INLANVICLNGGQNGELGKAILAKDDIRVEEIISESIAIFGRDNYIIEIHKLEYENEGLY 177 Query: 182 LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241 A+ELA L VATN F++S D+D HEIR I++ T+ D R ++ +QY++ Sbjct: 178 NEKALELASKHNLIAVATNLTVFMESDDYDIHEIRACINEKTTILDESRKSKFTREQYLK 237 Query: 242 SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTE-DYLVKRAKEGL 300 S +EM + F+++P L NT+ IAKRCNVT LG+ LP D TE +Y K +GL Sbjct: 238 SADEMYQTFSELPVLLENTLAIAKRCNVTFDLGKPCLPTVDIPDGLTEREYFSKLCYQGL 297 Query: 301 EERLAFLFP----DEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGV 356 ++RLA + D+ E + + Y +RL+ E+ +I MGFPGYFLIV +FI+WSK+N + Sbjct: 298 DKRLAKILENRPVDKHEHIIKV--YKDRLQREIDIICDMGFPGYFLIVEDFIRWSKENDI 355 Query: 357 PVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIE 416 PVGPGRGSGAGSLVAY+L ITD+DPL + LLFERFLNPERVSMPDFD+DFC++ RD+VI+ Sbjct: 356 PVGPGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDIDFCIQGRDRVIK 415 Query: 417 HVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAF- 475 +V YG+ +V QIIT+GTMAAK V+RDV RV+G +GF DRI+KLIP PG T K Sbjct: 416 YVEQKYGKQSVGQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPETPGTTFKKILH 475 Query: 476 EAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGK 535 E EP E+ +ADEEV +++ A+KLEG+ R+ GKHA G+VI+PT I+DFAP+YC+++G Sbjct: 476 EGEPLYDEM-QADEEVAEIVEKAQKLEGLPRSLGKHAAGIVISPTVISDFAPVYCEDKGG 534 Query: 536 HPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKK 595 VTQFDK DVE GLVKFDFLGL+ LTII A+ IN +R+ N E PLDI+ IPLDD+K Sbjct: 535 DIVTQFDKGDVEDVGLVKFDFLGLKNLTIIKNAIASINAKRSAN-ETPLDISDIPLDDEK 593 Query: 596 SFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRK 655 +F +LQ +T +FQLES+GM+ ++K L FE++IALVAL+RPGP+++ + F+DRK Sbjct: 594 TFKLLQAGKTIGIFQLESQGMQQIVKDLGTSNFEEIIALVALYRPGPMEN--IPTFVDRK 651 Query: 656 HGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKK 715 HGR++ +Y H L+ VL TYGI +YQEQVMQ+AQ L+GYTLGGAD+LRRAMGKK Sbjct: 652 HGRKQTTY-----LHPLLEEVLRETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMGKK 706 Query: 716 KPEEMAKQRSVFAEGAEK-NGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWL 774 KPEEM +QR +F EGA K + I A LA +IFD +E FAGYGFNKSH+AAYAL++YQT WL Sbjct: 707 KPEEMEQQRKIFKEGAAKYHNIEAGLADEIFDQMEAFAGYGFNKSHAAAYALIAYQTAWL 766 Query: 775 KAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYG 834 KAHYP E+MAA+M+ DM NT+++V + + MG+ +L P++N +Y G I+ G Sbjct: 767 KAHYPDEYMAALMSGDMGNTDQLVKFILDAKNMGITVLAPNVNKSVYDCIAASKGTILLG 826 Query: 835 IGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPH 894 +GAIKG+G I++I+ R G F +FDL R D +K+N++ LE L +GA + + Sbjct: 827 LGAIKGLGGEAIKSILNEREASGEFSSIFDLTRRVDLRKVNKKALEALCFAGAIKDISKN 886 Query: 895 RAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASC--QPWPEQVVLDG 952 RA NS+ A+K A + A GQ D+FG +E + + C + W + +L Sbjct: 887 RATAFNSIEKAIKNAGYVNEMAAAGQNDLFGFTEQESDTDTELERECIVEEWNLRELLIN 946 Query: 953 ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVM-----V 1007 E++ LG+Y +GH I+ + + V D+ ++ + + ++A+ + Sbjct: 947 EKKALGMYFSGHIID----DESHWRNHVSFSDLEKIQKPNMDGNSVRIIASMITPPARRK 1002 Query: 1008 TKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTA 1067 TK G + I +DD R + ++ D + ++ D +++V G+VS+D K++ Sbjct: 1003 TKTGRVLYIINIDDEFDRADCLVGEDVFAAVKDNIQVDDVVVVEGKVSYDKQRECNKLSV 1062 Query: 1068 REVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGT 1112 +V I + ++ + ++L + ++ L ++ +L+ + + T Sbjct: 1063 DKVQPISQYIDENFSKVELNLRSQNVNPTNLKKVLDNLKKNIATT 1107 >UniRef50_Q0F0W7 Putative uncharacterized protein n=2 Tax=root RepID=Q0F0W7_9PROT Length = 1169 Score = 906 bits (2342), Expect = 0.0, Method: Compositional matrix adjust. Identities = 491/1061 (46%), Positives = 671/1061 (63%), Gaps = 28/1061 (2%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F HL VHSD+S++ K L+ K A L PA+A+TD+ NL G ++FY GIKPI Sbjct: 6 FAHLHVHSDFSLLGSTLKIGDLLHKVAELRQPAVALTDYGNLFGAIEFYSKAMRMGIKPI 65 Query: 66 VGADFNVQCDLL--------GDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIID 117 +G + + D G L +LA NN G++NL L+S +Y G+ P + Sbjct: 66 MGCEVFICEDHTKRISEGPRGPRFPQLVLLARNNHGWKNLLKLVSISYLDGF-YYKPRVG 124 Query: 118 RDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDR-YFLELIRTGRP 176 + L E +GLI +S G G++ + L RG+ + Y + F + +F+E+ R Sbjct: 125 KPLLSEHADGLIAISSGWNGEIEQHLQRGDIEGARKVAIAYRDMFHEGCFFIEIQRQNGS 184 Query: 177 DEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSP 236 +E +ELA +P+VA+N+ F++ DF+A + A+ TL+D +++P Sbjct: 185 GQEQINELLIELAHELDIPLVASNNAHFLEREDFEAFQAMQALQQNRTLND-DVSGHFTP 243 Query: 237 QQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF-PTGDMSTEDYLVKR 295 + Y++S EEM ELF DIPEAL NTV IA RCNV ++ G Y LP F P DM Y+ ++ Sbjct: 244 EYYLKSYEEMQELFEDIPEALENTVHIANRCNVDLQFGNYQLPDFQPPEDMELSAYMRQQ 303 Query: 296 AKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNG 355 + EGL++R + + + + R YD RL EL VI MGFPGYFLIV +FI W+K G Sbjct: 304 SMEGLDDRWPAILAGDPDAV--RETYDARLAFELDVIENMGFPGYFLIVSDFITWAKHQG 361 Query: 356 VPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVI 415 +PVGPGRGSGAGSLVAY LKITDLDP+++ LLFERFLNPERVSMPDFD+DFCM +R++ I Sbjct: 362 IPVGPGRGSGAGSLVAYCLKITDLDPIKYGLLFERFLNPERVSMPDFDIDFCMSRREEAI 421 Query: 416 EHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAF 475 +V YG D V+QIITFG+M AKAVIRDVGRVL V+ I+KL+P D MTL KA Sbjct: 422 RYVTHKYGEDKVAQIITFGSMKAKAVIRDVGRVLPMELAKVNMIAKLVPNDLKMTLEKAL 481 Query: 476 EAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLY--CDEE 533 EP+L ++ + D EV L +A++LEG RNAGKHA GV+I ++ D APL+ EE Sbjct: 482 VDEPKLAKMVKEDVEVARLFALAKRLEGSHRNAGKHAAGVIIGRRELVDTAPLFKVAGEE 541 Query: 534 GKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDD 593 GK V Q+D ++VE GL+KFDFLGL+TLT+I+ A++++ + + + DI IP+ D Sbjct: 542 GK--VVQWDMANVEKVGLIKFDFLGLKTLTVIDIAVKLVRQYESGDAAKHFDITTIPMHD 599 Query: 594 KKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFID 653 + +F ++QR +T AVFQ+ES GM+DL+ RL+PDCFED+IALVAL+RPGPL+SGMVD FI+ Sbjct: 600 EATFQLMQRGQTGAVFQVESSGMRDLLTRLKPDCFEDIIALVALYRPGPLESGMVDTFIE 659 Query: 654 RKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMG 713 KHGR+ I YP Q LK +L+ T G+ILYQEQVMQIAQ+L+G++LG ADMLRRAMG Sbjct: 660 CKHGRQAIEYPLPQ-----LKTILQETNGVILYQEQVMQIAQLLAGFSLGQADMLRRAMG 714 Query: 714 KKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLW 773 KKK EEMA+QR +F GAEK ++ + A +FDL+EKFAGYGFNKSHSAAYAL+SYQT + Sbjct: 715 KKKAEEMAEQRKIFMAGAEKQKVDLDKAEHMFDLMEKFAGYGFNKSHSAAYALISYQTAF 774 Query: 774 LKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVY 833 LKAHYP FMAA M+ DM NT+K+ LV +C MG+ +L P IN + F D I Y Sbjct: 775 LKAHYPRAFMAATMSCDMGNTDKLALLVTDCRNMGIDVLQPHINESDWEFRPEGDC-IRY 833 Query: 834 GIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGP 893 G+G IKGVGE + A+I+ R G F D+ R + LN+R+LE +I +GA L P Sbjct: 834 GLGGIKGVGEAALRAVIDERKTNGEFTSFEDMIMRAPARTLNKRILEAMIRAGALQGLIP 893 Query: 894 HRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGE 953 H+ A + LG+ L+ + K A Q+ +F V EPE + + + W L E Sbjct: 894 HQRAALEGLGEVLENLSRKRKEFASNQSFLFTV--AEPESADGGFPTLPAWSPGESLQAE 951 Query: 954 RETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNR 1013 RE LG YLTGHP+ +LK +G L ++ E G I + + R RG Sbjct: 952 REVLGFYLTGHPLEAWLKRTTG-LGDCNLSELKEREEGAEIVVPVGISSIRQYQGGRGT- 1009 Query: 1014 IGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQV 1054 + L+D G+ E++ F+ +LL+ D L+++ +V Sbjct: 1010 MAFVQLEDLHGQAEMVCFSTIYADIAELLQADIPLLIAARV 1050 >UniRef50_Q6Q8S4 Predicted DNA polymerase III, alpha subunit n=1 Tax=uncultured marine gamma proteobacterium EBAC20E09 RepID=Q6Q8S4_9GAMM Length = 1148 Score = 893 bits (2307), Expect = 0.0, Method: Compositional matrix adjust. Identities = 493/1167 (42%), Positives = 708/1167 (60%), Gaps = 38/1167 (3%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F HLRV S++S+ GL +V+ A+ L MP++A+TD +N+ G+VKF+ GIKPI Sbjct: 5 FSHLRVSSEFSISQGLLTIDQIVENASRLSMPSVALTDKSNMFGMVKFFNKCESVGIKPI 64 Query: 66 VGADFNVQCDLLGDELTH-LTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL 124 G D GD+ ++ + LA N G++NL +IS A+ PII D LI L Sbjct: 65 SGVTIRTIFD--GDDKSYEILCLAKTNIGHKNLMKIISNAHNSNSFNV-PIIKFDDLISL 121 Query: 125 NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHA 184 + ++++SGGR + L N ++ + + E F D + LE+ RT R DE Y Sbjct: 122 KDDILIISGGRGTHIFEYLKINNFEDANKKIDKFRESFGDDFILEVQRTNRSDELEYFKN 181 Query: 185 AVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEE 244 + ++ + +P++ATNDV F D+D HE +V I+ G TL+DP R + +S QQY +S + Sbjct: 182 ILPISYEKNIPLIATNDVLFSSQDDYDTHETKVCINTGKTLNDPNREKLFSDQQYFKSSK 241 Query: 245 EMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKR-AKEGLEER 303 EM LF D + NT EI+K+CNV++ YFLP++P D +K+ + + L Sbjct: 242 EMSLLFNDYSSLVDNTNEISKKCNVSLSTKGYFLPEYPVPKEHDFDSFIKKLSSDRLNTL 301 Query: 304 LAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRG 363 ++ L D+++ EY RL EL I +MGF YFLIV +FI+WSK+N VPVGPGRG Sbjct: 302 ISGLAKDKQD------EYKSRLNYELDQIKKMGFSSYFLIVYDFIEWSKNNDVPVGPGRG 355 Query: 364 SGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYG 423 SGAGSLVAYAL IT LDP++ LLFERFLNPER+SMPDFDVDFCMEKRD VI++V+ YG Sbjct: 356 SGAGSLVAYALGITTLDPIKHGLLFERFLNPERLSMPDFDVDFCMEKRDLVIDYVSQKYG 415 Query: 424 RDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPE 483 +AVSQI TFGTMAA+AVIRDV R LG P+ DRI+K+IP PG+TL +A + +P E Sbjct: 416 SEAVSQIATFGTMAARAVIRDVTRALGKPHPLGDRIAKMIPFTPGITLDQAKKEQPLFAE 475 Query: 484 IYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDK 543 ++EV+ ++D+A KLEG+ RN GKHAGGVVIAP I+DF P+Y D +TQ+DK Sbjct: 476 TIRKEDEVREIVDLAYKLEGIARNVGKHAGGVVIAPGSISDFCPVYVDRSSDSIMTQYDK 535 Query: 544 SDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRS 603 DVE GLVKFDFLGLRTLT+I+ A++ IN+ + + LD+ IPLDDK F L Sbjct: 536 DDVEKIGLVKFDFLGLRTLTVIDRAVKSINEDLDEFNK--LDLNKIPLDDKNVFKFLSSG 593 Query: 604 ETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISY 663 +TTAVFQLES GM+DLIKRL+P FE++ AL+AL+RPGPL SGM D F+DRKHG ++Y Sbjct: 594 KTTAVFQLESSGMRDLIKRLKPTKFEEITALLALYRPGPLNSGMHDEFVDRKHGNSPVTY 653 Query: 664 PDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQ 723 P H+ L+P+LE TYG+I+YQEQVM+ A+VL+G++LG AD+LRRAMGKKK EEM +Q Sbjct: 654 P-----HKLLEPILEETYGVIVYQEQVMEAARVLAGFSLGQADILRRAMGKKKKEEMEEQ 708 Query: 724 RSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFM 783 R +F G KN I+ A IF+L+ +FA YGFNKSHSAAYAL+SYQT +LK +YP FM Sbjct: 709 REIFVNGCAKNDISTSNAEHIFNLINQFAEYGFNKSHSAAYALISYQTAYLKTYYPEYFM 768 Query: 784 AAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGE 843 A+V+++++ NT+K+ L+ EC RM +K+L P+I G F VN + EI YG+GAIKGV Sbjct: 769 ASVLSSELSNTDKIYSLIQECSRMNIKVLKPNILLGKKRFFVNANKEIEYGLGAIKGVAS 828 Query: 844 GPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLG 903 I+ + E R R L+D + D K ++ LE L SGAFD L P R + + Sbjct: 829 SFIDHVCEKR-ASIKLRNLWDFSQKIDIKLGGKKSLEALSYSGAFDSLAPTRNVAIECVK 887 Query: 904 DALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTG 963 D ++ + + D+F + E+ + E+ + L+ E+++LG YL+G Sbjct: 888 DMVRDGANRSAKNNLKSGDLFAQVEEDFDPYEK-FKDLPKLKLTEKLEFEKKSLGYYLSG 946 Query: 964 HPINQYLKEIERYVGGVR-LKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDR 1022 HP+ IE + +R L T + + L+ R + ++G + D Sbjct: 947 HPV----LAIENKIKNLRTLAIQQVTNDTQKASLVCLINNVRQIKDRKGQPLIFVNFSDG 1002 Query: 1023 SGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGG------LKMTAREVMDIDEA 1076 +G ++ ++ +D ++ ++++ I+ + G V DD+ +M RE ID Sbjct: 1003 TGSMDGIISSDVIENCHSVIKEGEIVNLKGLVELDDYRSKELGNTMFRMRIREAKAIDNE 1062 Query: 1077 REKYARGLAISLTDRQIDDQLLNRLRQSLEPHRS-----GTIPVHLYYQRADARARLRFG 1131 + + + I + ++ D L L L+ G+ +++ + A + G Sbjct: 1063 LIRLIKDVIIDV--QKSDATSLEDLSAKLDSINKEFWLDGSCSLNVKVMSEQSEAIIDLG 1120 Query: 1132 ATWRVSPSDRLLNDLRGLIGSEQVELE 1158 ++ SPS + L L + G +E++ Sbjct: 1121 DDYKFSPSLKNLTYLEDIFGKNILEIK 1147 >UniRef50_D0LJI6 DNA polymerase III, alpha subunit n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LJI6_HALO1 Length = 1174 Score = 892 bits (2306), Expect = 0.0, Method: Compositional matrix adjust. Identities = 496/1179 (42%), Positives = 719/1179 (60%), Gaps = 46/1179 (3%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F HL +H+ YS++DG + L K LGM ++A+TD N+ G V Y A G+K I Sbjct: 4 FTHLHLHTQYSLLDGAIRVKDLFPKVLELGMDSVAVTDHGNMFGAVDLYTAAREHGVKMI 63 Query: 66 VGADFNVQC----DLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL 121 G + + D H+ +LA + GY+NL+ L S Y G+ P ID+ L Sbjct: 64 FGCETYIAASDRFDRTNRRSYHMVLLAKDQVGYKNLSFLNSMGYLEGF-YYNPRIDKKIL 122 Query: 122 IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRTGRPDEES 180 E +EGLI +S G+V ++LL+ +A + Y++ F ++LE++ + +E+ Sbjct: 123 REHSEGLIGMSACLGGEVAQTLLKQGTAEAEAVALEYQDIFGKGNFYLEMM-GNQLEEQQ 181 Query: 181 YLHAAVE-LAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQY 239 L+A ++ ++ G+P+VATND ++ D AHEI ++I G T D KR R+ + Sbjct: 182 QLNADLKRMSRKLGIPLVATNDCHYVSQQDAHAHEILLSIQTGKTTSDDKRLRHTVDSYF 241 Query: 240 MRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF--PTGDMSTEDYLVKRAK 297 +++ EM F+D+PEA+ NTV+IA+RCNV + LG FLP + P G MS E YL K Sbjct: 242 LKNAAEMEVDFSDVPEAMENTVDIARRCNVELDLGNTFLPNYKVPEG-MSVESYLEKVVF 300 Query: 298 EGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVP 357 +GLE R L E R +Y ERL EL VIN+MGFPGYFLIV +FI W+K++ +P Sbjct: 301 DGLERRFREL--SEIGRSFDPDQYRERLRHELGVINKMGFPGYFLIVWDFINWAKEHNIP 358 Query: 358 VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEH 417 VGPGRGSGAGS VA+A++ITD+DPLEF LLFERFLNPERVSMPDFDVDFCM +RD+VI++ Sbjct: 359 VGPGRGSGAGSCVAWAMRITDIDPLEFKLLFERFLNPERVSMPDFDVDFCMNRRDEVIDY 418 Query: 418 VADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIP-PDPGMT--LAKA 474 V YG V QI TF + A+ VIRD+ RV+ PY D+++KL+P P G + + A Sbjct: 419 VKRKYGEKNVGQIATFHQLKARGVIRDIARVMELPYAEADKLAKLVPDPVGGKSPPVRDA 478 Query: 475 FEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEG 534 E EP+L +Y D +++ L+D+A LEG+ R+ G HA GVVIA + ++ P + + G Sbjct: 479 IEQEPELKRLYNEDPKMRDLLDVAASLEGLNRHVGMHAAGVVIAEDPLWEYVPCFRGQNG 538 Query: 535 KHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDK 594 + VTQF + E AGLVKFDFLGL+TLT+I+ A+ +IN++R GEP DI I D Sbjct: 539 E-IVTQFAMKEAEKAGLVKFDFLGLKTLTVIHTAVRLINEQREAAGEPLFDIDKIDKGDP 597 Query: 595 KSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDR 654 + M+ R +TT VFQLES G ++++ +L+PD ED++A VAL+RPGPL+ GMVD+FI+R Sbjct: 598 AVYKMISRGDTTGVFQLESSGFREILTKLKPDQLEDIVAAVALYRPGPLEGGMVDDFIER 657 Query: 655 KHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK 714 KHGR+ + YP H L+PVL TYG+I+YQEQVMQIAQVL+GY+LG AD+LRRAMGK Sbjct: 658 KHGRKRVEYP-----HPDLEPVLRDTYGVIVYQEQVMQIAQVLAGYSLGRADLLRRAMGK 712 Query: 715 KKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWL 774 K + MAK++ F GA + G++++LA ++FDL+ FAGYGFN+SHSAAY +SYQT +L Sbjct: 713 KNKDVMAKEKDGFVTGATERGVDSKLAEQVFDLMAFFAGYGFNRSHSAAYGWISYQTAYL 772 Query: 775 KAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHV----NDDGE 830 K HYP EFMA +M+ D DNT+ +V + E MGL + PD+N F V +D Sbjct: 773 KHHYPHEFMAGLMSCDQDNTDNIVKFIAEARAMGLVVARPDVNESAADFTVVVGEDDTKR 832 Query: 831 IVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDR 890 I +G+GA+KGVG+G +EAIIE RN+ F +++ C R D++K NRRV+E L+ SGAFD Sbjct: 833 IRFGLGAVKGVGQGAVEAIIECRNQDEKFISIYEFCRRVDSQKCNRRVIEALVKSGAFDG 892 Query: 891 L----GPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPE--------QIEQSY 938 L G HRA + ++ A+++ Q + GQ +FG++A PE + ++Y Sbjct: 893 LSEDAGLHRARVFATIEAAMESGAQAQRDRRSGQTSLFGLIA-APEGDSGATADGMPETY 951 Query: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998 + WP + +L E+E+LG Y++GHP+++Y ++ RY + G Sbjct: 952 PEVEEWPAKELLAFEKESLGFYISGHPLDRYRADLTRYANATTTDFLEGKRPAGPAAVGG 1011 Query: 999 LVVAARVMVTKRGN-RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFD 1057 +V A R T++G+ +I L+D +G+LEV++F ++ ++ L D ++ SG+V D Sbjct: 1012 VVSAYRERPTRKGDGKIAFFQLEDATGQLEVIVFPKTFERVRETLVLDEPILCSGKV-VD 1070 Query: 1058 DFSG---GLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIP 1114 + G +M E + R+ + I + Q+ + L Q L R Sbjct: 1071 EGEGAQHAWRMLLEEATPLAHLRQSQTSRVDIHIAADQVTPDQIEALEQILTASRGSCQA 1130 Query: 1115 V-HLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGS 1152 V HL R A + + W V+PS+ LL + L G+ Sbjct: 1131 VLHLSIPRRSATS-VWLDPRWNVAPSEELLARIERLFGA 1168 >UniRef50_C1SP26 DNA polymerase III, alpha subunit n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SP26_9BACT Length = 1188 Score = 885 bits (2286), Expect = 0.0, Method: Compositional matrix adjust. Identities = 480/1183 (40%), Positives = 726/1183 (61%), Gaps = 61/1183 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGM-PALAITDFTNLCGLVKFYGAGHGAGIKP 64 FVHL +H+ YS++DG L++K GM P + I+D + G+V FY IKP Sbjct: 16 FVHLHLHTQYSLLDGAILVGDLMQKIKEKGMTPMVGISDHGTMHGIVDFYRQARANDIKP 75 Query: 65 IVGAD--------FNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPII 116 I+G + FN + + HL + A NN G NL L+S A G+ P + Sbjct: 76 ILGCEVYVAPDSRFNTTYERGQERNHHLVLQAVNNKGLSNLQKLVSLAQFEGFHYK-PRV 134 Query: 117 DRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF----PDRYFLELIR 172 D++ + + +EGLI +S G++ R ++R DE VA E+ D +FLE+ Sbjct: 135 DKEIMAQYSEGLIAMSACLAGEIPRKIIRDQ---YDEAVAAAHEYRDIFGKDNFFLEIQE 191 Query: 173 TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 G ++ ++++ G+P+VATND +++ D +HE+ + I T++ P R Sbjct: 192 NGIEEQLMVNRNIIKMSRDSGIPLVATNDCHYLNKGDHLSHEVLICIQTQSTINSPNRFE 251 Query: 233 NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF--PTGDMSTED 290 +S Q ++++ EEM F ++P+AL NTVEIA RCN ++ GE LP++ P G + Sbjct: 252 IHSDQLWVKTPEEMWAAFGEVPDALTNTVEIANRCNTSITFGELHLPEYEVPEG-YTISS 310 Query: 291 YLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQW 350 YL A++GL E+LA + P E+ ++ Y +R++ E VI F GYFLIV +F+ + Sbjct: 311 YLEHLARKGLHEKLAKI-PSEKHQI-----YYDRMQKEFDVIIGKNFAGYFLIVWDFMNY 364 Query: 351 SKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEK 410 S+ G+PVGPGRGSGAGSLVAY+L ITDLDP+ F+LLFERFLNPER SMPDFD+DFC++ Sbjct: 365 SRSVGIPVGPGRGSGAGSLVAYSLGITDLDPIYFNLLFERFLNPERSSMPDFDIDFCVKG 424 Query: 411 RDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMT 470 R+QVI++V + YG D VSQIITFG + ++ +RDVGRVL P VD+++K IP DPGMT Sbjct: 425 REQVIKYVREKYGDDRVSQIITFGKLLGRSTVRDVGRVLEVPLPIVDKLAKAIPSDPGMT 484 Query: 471 LAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYC 530 L KA + + L ++++A E+ + +++ A KLEG+ RN G HA G+VI+ + ++ PL C Sbjct: 485 LRKALKKDEDLRKVFQAAEQGELILNHAVKLEGLVRNTGMHAAGIVISDKPLNEYVPL-C 543 Query: 531 DEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIP 590 + + QF+K +E GLVKFDFLGL LTII+ A++ I K R ++ LDIA+IP Sbjct: 544 RGQNNEVIAQFEKDTLESVGLVKFDFLGLNNLTIIDEAIKQIKKNRGED----LDIASIP 599 Query: 591 LDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDN 650 LD+KK +++L R +TTAVFQLES GMK+L+K+L+P+ FED+IALVAL+RPGP++SGM+D+ Sbjct: 600 LDNKKVYELLSRGDTTAVFQLESSGMKNLLKKLRPEQFEDIIALVALYRPGPMESGMLDS 659 Query: 651 FIDRKHGREEISY--PDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADML 708 F+ RK+G EEI Y PD L+ +L+ T G+++YQEQVMQIAQ++ GY+LG AD L Sbjct: 660 FVKRKYGEEEIDYIFPD-------LEEILKETRGVVIYQEQVMQIAQIIGGYSLGSADNL 712 Query: 709 RRAMGKKKPEEMAKQRSVF-------AEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHS 761 RRAMGKKK EM KQ+ F GA+ G + ++A +FD + KFAGYGFNKSHS Sbjct: 713 RRAMGKKKAAEMEKQKQFFLYGDGDTIPGAKARGYDMKMAEDLFDKLAKFAGYGFNKSHS 772 Query: 762 AAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLY 821 AAYAL+SYQT +LKA YP E+MAA+++ ++D +K+V +EC MG+ +LPP+IN Sbjct: 773 AAYALISYQTAYLKALYPVEYMAAILSCEIDKGDKIVTFTEECKNMGIDVLPPNINKSGV 832 Query: 822 HFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEK 881 +F + + I +G+GAIK VG IEA ++ R+K G F+ ++D C R D + N+RVLE Sbjct: 833 NFEI-EGTAIHFGLGAIKNVGFNAIEAALQERDKNGEFKNIYDFCERVDLRACNKRVLES 891 Query: 882 LIMSGAFDRLGPHRAALMNSLGDALKAAD-QHAKAE-AIGQADMFGVLAEEPEQIEQSYA 939 L+ +GAFD G +R + + AL+ +H AE I + F V E E+ + + Sbjct: 892 LVKAGAFDCSGKNRRQNLQVIERALEEGQRKHKMAEQGIMSIEAFLVDEESDEEEQFFFP 951 Query: 940 SCQPWPEQVVLDGERETLGLYLTGHPI---NQYLKEIERYVGGVRLKDMHPTERGKVITA 996 + PE +L E+E L Y++ HP+ N LK +G V +P G ++ Sbjct: 952 DVEEMPENELLKMEKEVLDFYISNHPLAIYNNILKTFTIPIGEV----ANPDSEGDIVIG 1007 Query: 997 AGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSF 1056 + R++ K+G ++ ++D +EV++F ++Y + LE D+I+I++G++ Sbjct: 1008 GLVKHVKRIVTKKKGEKMAFANVEDMDSEVEVVVFPRTFEQYSRHLENDKIIIIAGKI-- 1065 Query: 1057 DDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVH 1116 D + A ++MD+ EA E + I LT + ++LN+L+ +L H G +PV Sbjct: 1066 DHKEDNTVIMADKIMDVTEAMEMLTELVTIKLTSTGMTSEILNKLKTTLATHH-GDVPVK 1124 Query: 1117 LYYQRADARA-RLRFGATWRVSPSDRLLNDLRGLIGSEQVELE 1158 LY ++ A ++ G + + P N++ L+G ++ E++ Sbjct: 1125 LYLEKPKAYGVHIKTGPDFGIKPGYDFYNEIDNLLGKDRYEIK 1167 >UniRef50_Q1D042 DNA polymerase III, alpha subunit n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1D042_MYXXD Length = 1185 Score = 883 bits (2281), Expect = 0.0, Method: Compositional matrix adjust. Identities = 494/1198 (41%), Positives = 717/1198 (59%), Gaps = 62/1198 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F HL +H+ YS++DG + L+K GM ++A+TD N+ G + FY AGIKPI Sbjct: 3 FTHLHLHTLYSLLDGAIRMKDLIKTVKEKGMSSVAVTDHGNMFGAIDFYKKAKDAGIKPI 62 Query: 66 VGADFNV-----QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 +G + V + D HL ++A N GY NL L S AY G+ P ID+ Sbjct: 63 LGMEAYVAGPKGREDRSEKVSHHLILVAKNEEGYANLRYLSSTAYMHGF-YYHPRIDKKV 121 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRTGRPDEE 179 L E ++GL L+ G+V + RG+ Y++ F P +FLE+ G P+++ Sbjct: 122 LAEHSKGLFALTACLGGEVTSACFRGDMDHARRAAQEYKDIFDPGHFFLEVQSNGMPEQD 181 Query: 180 SYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQY 239 +L+ +P+ AT D +I D AHE+ + I G TL D KR ++ + + Y Sbjct: 182 KANENLKQLSRDLDIPLCATADAHYIKREDARAHELLMCIASGKTLADGKRMKHSTDKLY 241 Query: 240 MRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTED-YLVKRAKE 298 + S EM E F DIPEA+ NT IA++CN+ ++LG+ LP F D T D Y+ + A E Sbjct: 242 VTSPTEMLEFFKDIPEAVHNTQRIAEQCNLELKLGKPMLPTFKVPDSHTPDSYMAELAYE 301 Query: 299 GLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPV 358 GL ER L + R +Y RL E+ VI +MGF GYFLIV +FI W+K +PV Sbjct: 302 GLRERFTELAATVTYPIDRE-QYQARLALEIGVIQKMGFCGYFLIVQDFINWAKKMNIPV 360 Query: 359 GPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHV 418 GPGRGSGAGSLVAYAL+ITD+DP+ ++LLFERFLNPERVSMPDFD+DFC ++RD+VI++V Sbjct: 361 GPGRGSGAGSLVAYALRITDVDPIPYNLLFERFLNPERVSMPDFDIDFCQDRRDEVIQYV 420 Query: 419 ADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAE 478 YG V QIITFG++ AK+V+RDV RV P+ DRI+KL+P +TL +A E E Sbjct: 421 GRKYGEMNVGQIITFGSLKAKSVLRDVCRVFALPFSEGDRIAKLVPEVLNITLREAIEME 480 Query: 479 PQLPEIYEADEEV----------KALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPL 528 P+L E+ E + + ++++A LEG+ R G HA GVVIA + +F P+ Sbjct: 481 PRLKEMMETPSNIGEVEGKPVTTRDVLEIALALEGLHRQPGMHAAGVVIADKPLWEFVPV 540 Query: 529 YCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAA 588 Y K +TQF K +VE AGLVKFDFLGL+TLT+I AL+++ + K+ + Sbjct: 541 YQPPGEKTLITQFAKDEVEAAGLVKFDFLGLKTLTVIQHALDLVKRNHGKD----IPRHE 596 Query: 589 IPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMV 648 IPL+D+K+++++ + +T +FQ+ES G +++ +L+P+CFED+IA AL+RPGPL SGMV Sbjct: 597 IPLNDEKTWELMAKGDTAGIFQMESSGFTEMVVKLKPNCFEDVIAAGALYRPGPLDSGMV 656 Query: 649 DNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADML 708 D FI+RKHGRE++SYP H +L+PVL+ TYG+I+YQEQVMQI+QVL GYTLG AD+L Sbjct: 657 DVFINRKHGREKVSYP-----HPALEPVLKDTYGVIVYQEQVMQISQVLGGYTLGRADLL 711 Query: 709 RRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVS 768 RRAMGKKK E M +R+ F EG KN ++ ++A +IFDL+EKFA YGFNKSHSAAY LV+ Sbjct: 712 RRAMGKKKAEVMQAERAGFLEGCAKNNVDLKVAGEIFDLMEKFAEYGFNKSHSAAYGLVT 771 Query: 769 YQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDD 828 T WLKAHYP EFMAA+++++ DNT+KVV + E GL++LPPD+N F Sbjct: 772 IHTAWLKAHYPCEFMAALLSSEKDNTDKVVKHIGEARESGLEVLPPDVNQSDMEFGAV-S 830 Query: 829 GEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAF 888 G+I +G+GAIKGVGEG IE+I+EAR K G F+ LFD C R D++K+NR+V+E L+ +G+F Sbjct: 831 GKIRFGLGAIKGVGEGAIESILEAR-KDGSFKSLFDFCERVDSRKVNRKVMEALVKAGSF 889 Query: 889 DRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLA-----EEPEQIEQSYASCQP 943 D R + +++ A+ K +A GQ+ +FG+LA ++ Y + Sbjct: 890 DFEKRSRRQIFDTIEKAMNRGSASQKDKAAGQSSLFGMLAGPSSDGGGGGLKDDYVEVED 949 Query: 944 WPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAA 1003 W E+ L E+E +G Y++GHP++QY KE++RY + + + +T AG+V Sbjct: 950 WSEKERLSLEKEAIGFYVSGHPLHQYDKELKRYARPITA--VQRARKDDKLTVAGIVTVL 1007 Query: 1004 RVMVTKRGNRIGICTLDDRSGRLEVMLF---------------------TDALDKYQQLL 1042 R TK G R+ T++D SG +E++ F + ++ LL Sbjct: 1008 RERPTKTGKRMAWVTIEDLSGSIELVCFPGKDGTRNVMGRDGKWAKQGPKPGFENWEHLL 1067 Query: 1043 EKDRILIVSGQVSF---DDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLN 1099 + D ++VSG V D+ + ++ ++ + REK + L + + + ++ + Sbjct: 1068 KSDDPILVSGTVQISQRDEDTPTPELIVDDIQSLKAVREKRTKRLELRVPADLLTEERVA 1127 Query: 1100 RLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSEQVEL 1157 +L + L +G PV + L + +V +D LL + L G VE Sbjct: 1128 KLHE-LAKKYAGATPVAVSVLFKGEGEALIGNTSIKVQVNDDLLLAVDRLFGMRVVEF 1184 >UniRef50_Q1MRR3 DNA polymerase III, alpha subunit n=3 Tax=Desulfovibrionaceae RepID=Q1MRR3_LAWIP Length = 1169 Score = 872 bits (2252), Expect = 0.0, Method: Compositional matrix adjust. Identities = 480/1185 (40%), Positives = 709/1185 (59%), Gaps = 56/1185 (4%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL HS+YS++DG + L + GMPA A+TD NL FY GIKPI Sbjct: 4 FVHLHCHSEYSLLDGAIRLDALCARTKEFGMPAAAVTDHGNLFAATHFYSICKEYGIKPI 63 Query: 66 VGADFNVQCDLLGDELT-------HLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDR 118 +G + V D D+L+ HL +LA N GY NL L+++ Y G+ P +D+ Sbjct: 64 IGCEVYVTKDH-ADKLSKFSKARHHLILLARNKEGYHNLVKLVTRGYLDGFHYK-PRVDK 121 Query: 119 DWLIELNEGLILLSGGRMGDVGRSLLRGN-----SALVDECVAFYEEH---FPDRYFLEL 170 L + + G+ LS G++ R+++ N D+ ++ +E+ +P +++LE+ Sbjct: 122 TLLKQFSSGITALSACLAGELPRTIMGKNIFVEKGGTFDDAISIAQEYASIYPGQFYLEV 181 Query: 171 IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230 P+++ ELAE LP+VATND ++++ D +AH+I + + +D R Sbjct: 182 QANMLPEQQKVNEKLYELAEYTNLPLVATNDCHYLNADDVEAHDILLCVQTQAKFNDTDR 241 Query: 231 PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLP--QFPTGDMST 288 R + Y +S EEM + F+ +P A+ NT++IA+ C+V + + P + P G ++ Sbjct: 242 MRFNATDLYYKSSEEMEKAFSHLPIAIENTIKIAESCSVEMDFSKNLFPVYELPKG-VTP 300 Query: 289 EDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFI 348 +D + A+EGL++RL ++P++++ Y +RLE EL +I +MGFPGYFLIV +FI Sbjct: 301 DDEFRRLAREGLQKRLE-VYPNKKQLTTEN--YWKRLEQELDIICKMGFPGYFLIVQDFI 357 Query: 349 QWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCM 408 W+KDN +PVGPGRGS GSLVA+AL+IT++DPL ++LLFERFLN ER+S+PD DVDFC Sbjct: 358 NWAKDNNIPVGPGRGSATGSLVAWALRITNIDPLPYNLLFERFLNIERISLPDIDVDFCE 417 Query: 409 EKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG 468 +KR VI +V + YG ++V+QI TFG M AKAV+RD+GRVL + D I+KLIP D Sbjct: 418 DKRGDVIRYVMNKYGVNSVAQITTFGKMKAKAVVRDIGRVLDMSFKETDNIAKLIPDDLH 477 Query: 469 MTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPL 528 MT+ KA E EP+L +Y + +K L+D++ KLEG+ R+A HA GVV++ + ++ PL Sbjct: 478 MTILKAMEVEPKLQALYNEEPHIKRLLDISMKLEGLVRHASTHAAGVVVSDKPMDEYLPL 537 Query: 529 YCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAA 588 Y ++G+ VTQFD VE GLVKFDFLGLRT+T+I+ L+ I + G+ P ++ Sbjct: 538 YRGKKGE-LVTQFDMKMVEKVGLVKFDFLGLRTMTLIHTTLKTIKDQ----GKIPPNLDT 592 Query: 589 IPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMV 648 +PLDD K++++L + +T VFQ+ES GM+ ++ L+P+CFED+IA++AL+RPGPL SGMV Sbjct: 593 LPLDDPKTYELLSKGDTDGVFQVESSGMRQYLRMLKPNCFEDLIAMLALYRPGPLGSGMV 652 Query: 649 DNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADML 708 D FI RKHG I YP SLK L+ TYG+I+YQEQVMQIAQ+++GY+LG AD+L Sbjct: 653 DEFIKRKHGTVTIEYP-----LPSLKDCLKDTYGVIVYQEQVMQIAQIVAGYSLGEADLL 707 Query: 709 RRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVS 768 RRAMGKK PE MAK+R+ F EGA KN + +A IFDL+EKFA YGFNKSHSAAYAL+S Sbjct: 708 RRAMGKKNPEAMAKERTRFVEGAIKNNVTESIASDIFDLMEKFAEYGFNKSHSAAYALIS 767 Query: 769 YQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDD 828 Y T +LKAH+ EFMAA++T++ N K++ C MG+ IL PDI + F V D+ Sbjct: 768 YHTAYLKAHFTLEFMAALLTSESGNQNKILKYTAACKDMGIDILKPDIQTSCREFIVKDN 827 Query: 829 GEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAF 888 IV+G+ AIK VG+ IE II R K G F L D+ R + KK+ RRVLE L+ GA Sbjct: 828 S-IVFGLCAIKNVGDDAIEKIITTRKKDGPFLSLLDMSFRVNLKKVTRRVLESLVKGGAC 886 Query: 889 DRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAE-EPEQIEQSYASCQ----- 942 D G RA ++ +L + + K E Q + + E + +C+ Sbjct: 887 DSFGCSRAGMLTALDKIIARTYKKIKDEQSNQGSLLAFAPKIESVSLPGIGFTCEEQNMP 946 Query: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVA 1002 W E L E+E LG +LT HP+ Y +EI R +G L+++ I +A +V Sbjct: 947 EWDEDEKLLYEKEALGFFLTSHPLQTYRQEIYR-LGLQPLEEVREMNDKITIKSAIIVNN 1005 Query: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQV-------- 1054 R ++ KRGNR+ ++D + EV F++ L K ++LL ++ L+++ + Sbjct: 1006 IREILNKRGNRMAFVRVEDLTASAEVTFFSEELQKSRELLSSNQPLLLTATIDSRESTQN 1065 Query: 1055 -----SFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHR 1109 S D +K+ A V + A + ++ + ++ + L+ L+ H+ Sbjct: 1066 DTIDESDDTQLRSIKLRAISVESLSSACQNSELPISYYVDKNRLTTSGIEELKAILDKHK 1125 Query: 1110 SGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDL-RGLIGSE 1153 G VHL + + ++R G++W VSPS D+ R I SE Sbjct: 1126 -GQTEVHLIFSLDNINCQVRLGSSWNVSPSPAFQQDMYRWSIASE 1169 >UniRef50_Q2Z0E7 DNA polymerase III, alpha subunit n=1 Tax=uncultured candidate division WS3 bacterium RepID=Q2Z0E7_9BACT Length = 1160 Score = 867 bits (2240), Expect = 0.0, Method: Compositional matrix adjust. Identities = 465/1170 (39%), Positives = 699/1170 (59%), Gaps = 37/1170 (3%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M FVHL HS YS++DG + +V++A MPALAITD ++ G ++FY Sbjct: 1 MMHSDFVHLHNHSQYSLLDGACRIDRMVQRALEFRMPALAITDHGSMFGAIEFYSEAREH 60 Query: 61 GIKPIVGADFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAA 112 GIKPI+G + V ++ +HL +L N GY+NL L S +Y G+ Sbjct: 61 GIKPIIGMEAYVTPGSHAEKPAGKGMESYSHLLLLIRNAEGYRNLMKLSSASYVDGF-YY 119 Query: 113 GPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRY-FLELI 171 P +D++ L + +GL+ + G+ + +L GN E + E F D + +LE+ Sbjct: 120 KPRVDKELLRKYGDGLLACTACLKGEPAQHVLAGNEDAARESIIELVEIFGDGHVYLEVH 179 Query: 172 RTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRP 231 G P+E A V L G+P+VA ND ++ AH++ + I G +D+P R Sbjct: 180 NHGMPEEAVIRQAYVRLGRELGVPLVAANDCHYVRREQAAAHDVLLCIQTGREIDEPNRM 239 Query: 232 RNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT--GDMSTE 289 R + + YM+S EEM ELF D P A NT+E+A++CN+ + +P+FP G Sbjct: 240 RMPNDEFYMKSPEEMRELFLDCPGAYENTIEVAEKCNLQLDFDHVHMPEFPIPQGYTDAA 299 Query: 290 DYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQ 349 +L +EGLEER + PE + R EL +I QMGF GYFLIV +FI Sbjct: 300 AHLEALTREGLEERYETV----------TPEVEARAALELSMIGQMGFAGYFLIVHDFIH 349 Query: 350 WSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCME 409 ++ G+PVGPGRGS A S+V+YAL IT+LDPLEF L+FERFLNP R SMPDFD+DFC E Sbjct: 350 EARRRGIPVGPGRGSAAASIVSYALGITELDPLEFGLVFERFLNPARKSMPDFDIDFCYE 409 Query: 410 KRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGM 469 +R+++IE+V + YGR++V+QIITFGTM A+A IRDVGRVL PY VDR++K++P + + Sbjct: 410 RRNEIIEYVTEKYGRESVAQIITFGTMQARAAIRDVGRVLKFPYSEVDRVAKMVPRELNI 469 Query: 470 TLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLY 529 TL +A P+L + ++DE L+D A LEG+ R+A HA GV+IAP +I D+APLY Sbjct: 470 TLEEALAKTPELKALRDSDERYAKLLDYAGDLEGLARHASVHAAGVIIAPGRIDDWAPLY 529 Query: 530 CDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAI 589 +G+ TQ+ + + GL+KFDFLGLRTLT+I+ AL MI + R + P I Sbjct: 530 RSNKGE-ITTQYPMNSLARIGLLKFDFLGLRTLTVIHDALAMIRENRGIDLAPD----RI 584 Query: 590 PLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVD 649 PLDD +++++L T +FQ+ES GM+DL+++++P+ EDM A+ ALFRPGPL SGMVD Sbjct: 585 PLDDPETYELLGTGHTVGIFQVESSGMRDLLRKVRPERLEDMTAVNALFRPGPLGSGMVD 644 Query: 650 NFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLR 709 +++ RKHGR+++SY H L PVLE TYG++ YQEQVMQI+ L+G+++ AD+L Sbjct: 645 DYVKRKHGRQKVSY-----IHPKLAPVLEETYGVMAYQEQVMQISSALAGFSMSQADVLL 699 Query: 710 RAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSY 769 AM KK E+MA QR F G +NGI+ +A+K+FD +E F+GYGFNK HSA YA+++ Sbjct: 700 NAMRKKVVEQMATQREDFLAGCRENGISERIAVKVFDQMEFFSGYGFNKPHSACYAVLAV 759 Query: 770 QTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDG 829 +T +LK H+ EFMAA +T++MDN+++VV L EC R+G+++LPPD+N G F G Sbjct: 760 RTAYLKTHFAPEFMAATLTSEMDNSDRVVALTGECRRLGIRVLPPDVNEGHVEFRATSRG 819 Query: 830 EIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFD 889 +I +G+ A+K VG + +++ AR + G F ++FDL +R D + +NRRVLE L+ +GA D Sbjct: 820 DIQFGLSAVKNVGRAAVRSMVAARREHGSFEDVFDLTSRVDLRLVNRRVLESLVAAGALD 879 Query: 890 RLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEE--PEQIEQSYASCQPWPEQ 947 L HRA ++G AL + + GQ + +L + E + PWP+ Sbjct: 880 GLHGHRAQQYEAIGAALDLGQRAQRDRDSGQTSLMDILDTDAGSELRPRRLPEATPWPDG 939 Query: 948 VVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMV 1007 V L E+E LG+Y++GHP+ +Y KE+ + + D+ + + G++ + Sbjct: 940 VALAKEKEVLGMYVSGHPLARYEKELSTFATATTM-DLAEMVDDEPVRLGGIITHVKTTA 998 Query: 1008 TKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTA 1067 ++G ++ TL+D +G +E+++F+ K +++ +D +IV G+VS + K+ Sbjct: 999 DRKGEQMAFVTLEDFTGSVELVVFSSTYAKKSEIIRRDAAVIVDGKVSTRE-EEEPKVIV 1057 Query: 1068 REVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARAR 1127 +V+ + A ++ + IS+T ++ +L LR L H GT PV + + A Sbjct: 1058 ADVVSLSHAHGRFVERMTISITSVGFEESMLEDLRDVLLSH-GGTCPVDIVVKAASGEDV 1116 Query: 1128 LRFGATWRVSPSDRLLNDLRGLIGSEQVEL 1157 + RV PS L+ L ++G V L Sbjct: 1117 MISTGGMRVEPSRELVARLEDIVGETGVAL 1146 >UniRef50_C6BS12 DNA polymerase III, alpha subunit n=4 Tax=Desulfovibrio RepID=C6BS12_DESAD Length = 1175 Score = 866 bits (2237), Expect = 0.0, Method: Compositional matrix adjust. Identities = 482/1176 (40%), Positives = 711/1176 (60%), Gaps = 59/1176 (5%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MSE FVHL VH++YS++DG + L ++A GMPA+AITD ++ G V FY Sbjct: 1 MSE--FVHLHVHTEYSLLDGAIRIKDLCQQAKDFGMPAVAITDHGSMFGAVTFYMTAMDM 58 Query: 61 GIKPIVGADFNVQCDLLGDELTH----------LTVLAANNTGYQNLTLLISKAYQRGYG 110 GIKPI+G + V + DEL H L +LA N GY+N+ L S + G+ Sbjct: 59 GIKPIIGCEVYVAPGDIDDELAHTRKDKKGRYHLVLLAKNQQGYKNIIKLCSLGFLEGFH 118 Query: 111 AAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170 P + + L + +EG+I LS G+V R+L+ E YE FP ++LE+ Sbjct: 119 YK-PRVSKYLLNKYSEGVIALSACLAGEVPRALMNEGLDAGIEMAKTYESIFPGNFYLEV 177 Query: 171 IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230 G ++E + AE GLP+VATND ++ D++AH++ + I T+D KR Sbjct: 178 QANGLKEQEDLNELIYKCAEQTGLPLVATNDCHYLTKEDYEAHDLLLCIQTQTTVDAEKR 237 Query: 231 PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF--PTGDMST 288 R + Q Y + +EE E FA +PEA+ANT +IA+ CN+ + LG Y+ P++ P G M+ Sbjct: 238 FRMGTDQLYFKPQEEFEEYFAHVPEAIANTQKIAEMCNLEIELGNYYFPEYELPEG-MTI 296 Query: 289 EDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFI 348 E VK KEGL++R+ P E + K Y ERL+ EL VIN+MGFP YFLIV +FI Sbjct: 297 ETEFVKLCKEGLQKRIENA-PYEIDEAK----YWERLDYELGVINEMGFPAYFLIVQDFI 351 Query: 349 QWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCM 408 W+KDN +PVGPGRGS AGS+VA+AL+IT+LDP+ +DLLFERFLN ERVSMPD DVDFC Sbjct: 352 NWAKDNRIPVGPGRGSAAGSIVAWALRITNLDPIPYDLLFERFLNVERVSMPDIDVDFCE 411 Query: 409 EKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG 468 +R +V+++ ++ YG D V+QI T+GTM KAVI+DVGR +G + D I+KL+P DP Sbjct: 412 RRRLEVVKYCSEKYGWDHVAQITTYGTMKTKAVIKDVGRAMGMHFSETDPIAKLVPDDPA 471 Query: 469 ------------MTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVV 516 +T+ A EA P+L + D ++ L+D+A +LEG++R+A HA GVV Sbjct: 472 VIAQGLGVKKAKITVPNAVEAIPELSNMVATDPKIAKLMDIATRLEGMSRHASTHAAGVV 531 Query: 517 IAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRR 576 I+ +TD+ PLY ++G+ VTQ+D VE GL+KFDFLGLRT+T+I L++I R Sbjct: 532 ISDKPMTDYLPLYKGKKGE-IVTQYDMKKVEKVGLIKFDFLGLRTMTVIEDCLDII---R 587 Query: 577 AKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVA 636 + E P D+ + LDD+ +FD+ + +T VFQ+ES GM+ ++ L+P CFED+IA++A Sbjct: 588 LQGKEAP-DLDTLTLDDQDTFDIFCKGDTDGVFQVESSGMRKYLRMLRPSCFEDIIAMLA 646 Query: 637 LFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQV 696 L+RPGPL SGMVD FI RKHG E++Y W +L+P L+PTYG+I+YQEQVM A Sbjct: 647 LYRPGPLGSGMVDEFIKRKHGEIEVTY---LWP--TLEPSLKPTYGVIVYQEQVMGAAMT 701 Query: 697 LSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGF 756 ++ Y+LG D+LRRAMGKK PEEMAK R F +GA++N I + A IFDL+E+FA YGF Sbjct: 702 IANYSLGEGDLLRRAMGKKIPEEMAKHRVRFVDGAKENNIPEQTANDIFDLMEQFAAYGF 761 Query: 757 NKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDI 816 NKSHSAAYAL+SY T +LKAH+P EFMAA+M+ +M+NTEK++ ++ C M + + PDI Sbjct: 762 NKSHSAAYALISYYTAYLKAHFPVEFMAALMSTEMNNTEKIIMYINACRDMDVTVRQPDI 821 Query: 817 NSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNR 876 N G+ F V +G+I+YG+ IK VGE I+ I+E R K G F++ D R + +++ + Sbjct: 822 NLGVARFSVY-EGDIIYGMAGIKNVGEEAIDEIVEERQKNGPFKDFIDFITRVNLRRVTK 880 Query: 877 RVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVL-----AEEP 931 RV+E LI +GAFD +G R+ L+ SL A+ + K + G +M +L AEEP Sbjct: 881 RVIEYLIRAGAFDSMGLTRSGLIASLDKAVSYGQKKNKEKESGMINMLDMLGGGGEAEEP 940 Query: 932 EQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERG 991 + + ++ + E+E LG YLT HP+ Y E+ R +G +++ Sbjct: 941 AVVSFEEFNMPEMDDKEMQRLEKEALGFYLTCHPLLSYRNEMSR-LGLQTIENCPNLAHE 999 Query: 992 KVITAAGLVVAARVMVTKR-GNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIV 1050 I ++ + ++TK+ G ++ T++D +G E+++F ++ Q L +D L++ Sbjct: 1000 ATIKLGAIITGYKEIITKKSGKKMAFATIEDMTGSGELIIFPKTYEEVHQYLGQDIPLLI 1059 Query: 1051 SGQVSFDDFSGGL-------KMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQ 1103 G+V G K+ E+ ++ A+ + +S+ ++ + L+ Sbjct: 1060 KGKVDNPPPEEGQEEAMPESKVMCDEISPLENAQAGCQEAVPLSVHHSLCSEEGIAELKA 1119 Query: 1104 SLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPS 1139 L + G+ P+ L D+ LR G T+ + P+ Sbjct: 1120 ILAGY-PGSAPITLQMFLPDSICTLRLGHTYNIKPN 1154 >UniRef50_Q0C1C2 DNA polymerase III, alpha subunit n=2 Tax=Alphaproteobacteria RepID=Q0C1C2_HYPNA Length = 1140 Score = 856 bits (2211), Expect = 0.0, Method: Compositional matrix adjust. Identities = 475/1055 (45%), Positives = 653/1055 (61%), Gaps = 27/1055 (2%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M++P F+HL + S +S+++ + A L K MPA+A+TD L G ++ Sbjct: 1 MTKPVFIHLAIRSSFSLLESMITPADLAKWCKQYSMPAMAVTDRNCLFGALELSIKLSDY 60 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 G++PI+ F+V EL LT A ++ GY+ L L S+AY P + + + Sbjct: 61 GVQPIMACCFDVTDGSPKAELFRLTAYAQDDVGYKRLMFLSSRAYLEADDGV-PRLHKKY 119 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 180 L+E EGLILL+GG G+V R +L+G A ++ +P R ++E+ R G +E Sbjct: 120 LLENTEGLILLTGGAEGEVARHILKGRLADARTELSTLATAYPGRCYVEITRHGTQEEIK 179 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 VELA GLP+VAT+D RF+ D AH+ + I +G L R R P QY+ Sbjct: 180 SETGLVELAYELGLPLVATHDARFLKPEDVTAHDAMMCIANGQYLGQDDRKR-VEPDQYL 238 Query: 241 RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKEGL 300 +S EEM LFAD+PEA+ANT EIA RC+V + LP F S + L +A++GL Sbjct: 239 KSPEEMEVLFADLPEAIANTSEIAIRCSVRAETRKPILPNFSKEGRSEGEELALQARQGL 298 Query: 301 EERLAFLFPDEEERL-KRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVG 359 EERLA E +RL R Y +RLE EL +I++MGFPGYFLIV +FI+W+K NG+PVG Sbjct: 299 EERLA-----EADRLYAERQVYLDRLEYELGIIDRMGFPGYFLIVSDFIKWAKANGIPVG 353 Query: 360 PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVA 419 PGRGSGAGSLVA+ L ITDLDPL FDLLFERFLNPERVSMPDFDVDFC E+R +VI +V Sbjct: 354 PGRGSGAGSLVAWVLLITDLDPLRFDLLFERFLNPERVSMPDFDVDFCQERRGEVIRYVR 413 Query: 420 DMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGM--TLAKAFEA 477 + YG D+V+ IITFGT+ AKAV+RDVGRV+ PYG VDR++KLIP +P TL +A A Sbjct: 414 EKYGADSVAMIITFGTLQAKAVVRDVGRVMQMPYGQVDRLAKLIPFNPAKPPTLDEAIAA 473 Query: 478 EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHP 537 EP+ + AD V LID AR LEG+ RNAG HA GVVIA + + PLY D P Sbjct: 474 EPKFDDEIAADARVGELIDTARALEGMYRNAGTHAAGVVIADRPLVELVPLYNDPRADLP 533 Query: 538 VTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSF 597 TQF+ E AGLVKFDFLGL+TLT+I+ AL I + G A +DD ++ Sbjct: 534 ATQFNMKYAEMAGLVKFDFLGLKTLTVIDRALNFIRRDGGDVGP-----AWRSMDDPATY 588 Query: 598 DMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHG 657 +++ ET VFQLE GM+D ++R++P+ ED+IA+++L+RPGP++ N G Sbjct: 589 ELMASGETLGVFQLEGAGMRDTLRRVRPNNIEDLIAIISLYRPGPME-----NIPVYVQG 643 Query: 658 REEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKP 717 +E+ + V++QH LKPVLE TYG+ +YQEQVM++AQ ++GY+LG AD+LRRAMGKKK Sbjct: 644 KEDPA--SVRYQHPDLKPVLEATYGVPVYQEQVMRMAQEIAGYSLGEADLLRRAMGKKKL 701 Query: 718 EEMAKQRSVFAEGAEKN-GINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKA 776 EEM QR F EGA N G+ LA +IFD +EKFAGYGFNKSH+AAYAL+ Y T +LK Sbjct: 702 EEMIAQRRRFVEGAAANKGMKDSLANEIFDTMEKFAGYGFNKSHAAAYALIGYHTAFLKC 761 Query: 777 HYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIG 836 HYP EF+AA M+ D+ NT+K+ E R+ L +L PDINS F VN+DG IVY +G Sbjct: 762 HYPKEFLAASMSLDIGNTDKLAAFFQEAKRLRLHVLAPDINSSQPDFDVNEDG-IVYALG 820 Query: 837 AIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRA 896 AIKGVG ++ + R++GG F++L+D R D K +N++ LE L SGA D L +RA Sbjct: 821 AIKGVGVEAMKHVSAVRSEGGPFKDLYDFAERVDPKHVNKKALESLAKSGALDCLEGNRA 880 Query: 897 ALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERET 956 + + + HA+ + GQ +FG E + + +PW Q LD E ++ Sbjct: 881 RVFAVVPMLAQYCASHAEDRSGGQGGLFG---ESEPALRPEFPPSRPWTAQQKLDEEFKS 937 Query: 957 LGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGI 1016 +G Y +GHP++ L I+R + ++ GK + G+V +KRG + Sbjct: 938 IGFYFSGHPLDDVLTSIDRDRVTLAMEVHERAGDGKPLEMIGIVRTRNDKPSKRGGKFAF 997 Query: 1017 CTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVS 1051 T+ D +G LE+M+F + L +Y LL+ + + ++ Sbjct: 998 LTISDPTGELEMMVFNEGLQQYGDLLQPGKAVAIT 1032 >UniRef50_A3EVF9 DNA polymerase III, alpha subunit n=3 Tax=Leptospirillum RepID=A3EVF9_9BACT Length = 1201 Score = 850 bits (2197), Expect = 0.0, Method: Compositional matrix adjust. Identities = 489/1188 (41%), Positives = 700/1188 (58%), Gaps = 63/1188 (5%) Query: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61 S +FVHL VH+ YS++DG K PL++KA A MPA+A+TD NL G ++F+ G Sbjct: 3 STDQFVHLHVHTQYSLLDGANKIDPLIRKARAENMPAIAMTDHGNLFGAIEFFQTAKKHG 62 Query: 62 IKPIVGADFNV-------------------QCDLLGDELTHLTVLAANNTGYQNLTLLIS 102 +KPI+G + + Q + + HL +LA N+TGY+NL ++S Sbjct: 63 VKPIIGCEVYITPRSRFDRQDLYFGGDGPHQAKKINNASFHLILLAENDTGYRNLLKIVS 122 Query: 103 KAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF 162 ++ G+ P ID + L +EGLI LSG G + L RG++ + E F Sbjct: 123 LSHLEGF-YYRPRIDLELLSRHHEGLIALSGCLKGQISYMLTRGDTDRAYATAGLFREIF 181 Query: 163 -PDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHD 221 P+ YF E+ G D+ + L++ +P+VATND +++ D H+I + + Sbjct: 182 GPENYFFEVQANGLEDQRIANREIIGLSKKLSIPLVATNDCHYLEREDSVPHDILLCLQT 241 Query: 222 GFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF 281 G TL+DP R R S + Y+++ EM F ++PEA+ NT+ IA R +V++ L +P + Sbjct: 242 GKTLEDPARLRFGSDEFYLKTPREMVRSFEELPEAIENTLRIADRIDVSIDLQTTHMPSY 301 Query: 282 ----PTGDMST-EDYLVKRAKEGLEERLA-FLFPDEEERLKRRPEYDERLETELQVINQM 335 G +T + V+ ++EGL+ R F D E+ L Y ERLE E+QVI +M Sbjct: 302 RLDENQGQTTTVPELFVRTSREGLDARFQENTFSDTEKAL-----YLERLEREIQVIQKM 356 Query: 336 GFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPE 395 G+ GYFLIV +FI+ +++ G+PVGPGRGS AGS+VA++L+IT++DP+ F LLFERFLNPE Sbjct: 357 GYEGYFLIVWDFIRKAREMGIPVGPGRGSAAGSVVAWSLRITNIDPIRFGLLFERFLNPE 416 Query: 396 RVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGF 455 RVS+PD DVDFCM +R +VI++V D YG D V+ I TFGTM AK IRDVGRVLG Y Sbjct: 417 RVSLPDIDVDFCMNRRGEVIQYVVDRYGMDRVAMIATFGTMGAKGSIRDVGRVLGMTYAE 476 Query: 456 VDRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGV 515 VDR++K+IP MTL KA E P L + E D ++ L ++RKLEG+TR++ HA GV Sbjct: 477 VDRVAKMIPNSLDMTLEKALEENPDLRALLEKDPRMEELFSLSRKLEGITRHSSIHAAGV 536 Query: 516 VIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKR 575 VI+ + + PL G+ VTQF K DVE GLVKFDFLGL TLT+I A + Sbjct: 537 VISREPLLEHVPLMRGANGE-IVTQFTKDDVEKVGLVKFDFLGLTTLTLIQGA-----EN 590 Query: 576 RAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALV 635 R + P IPLDD +++ +L +T +FQLESRGM DLI ++QP+ FED+IAL+ Sbjct: 591 RIQAHTPDFSADRIPLDDARTYRLLSEGKTLGIFQLESRGMTDLIMKMQPETFEDLIALL 650 Query: 636 ALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQ 695 AL+RPGP+ SGMVD+FI RK EI Y + L+PVL TYG+I+YQEQVMQIA Sbjct: 651 ALYRPGPINSGMVDDFIKRKKNPREIRY-----ELPELEPVLRETYGVIVYQEQVMQIAN 705 Query: 696 VLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYG 755 VL+G++LG AD+LRRAMGKKKPEEMAK + F +GA + G E A +F+L+ FAGYG Sbjct: 706 VLAGFSLGEADLLRRAMGKKKPEEMAKMQDKFVDGAIRKGFPKEKATHVFELMAYFAGYG 765 Query: 756 FNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPD 815 FNKSHSAAYAL+SYQT +LKAHYP E AA++T +D+TEK+ + MG+++L PD Sbjct: 766 FNKSHSAAYALISYQTAYLKAHYPLELWAALLTNALDDTEKIGVFLAGAKDMGIEVLAPD 825 Query: 816 INSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLN 875 IN + F + I++G+GA+K VG+ ++ I+EAR G F + D R KK+N Sbjct: 826 INQSEFDFAILPGSRILFGLGAVKNVGKQAVDCILEARANDGPFVDFPDFLKRIVGKKVN 885 Query: 876 RRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIE 935 RRV+E LI +GAF LG R+ M SL D L A++ + Q +F + Sbjct: 886 RRVIEALIRAGAFRSLGIRRSVAMESLDDLLAWAEKQKSGKGSLQKSLFSE--------D 937 Query: 936 QSYASCQP-------WPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPT 988 Q S P W E+++L E+ LG YLT HP+ +Y + + + + + Sbjct: 938 QGGRSSGPPLREVPEWDERMLLREEKNALGFYLTSHPMARYADLLLK-LDTRSTRSLESV 996 Query: 989 ERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRIL 1048 G+ + +V A R + TK+G+++ TL D G +E +LF D + Q+ L+ D + Sbjct: 997 SEGETVRVFAVVSALREVKTKKGDKMAQLTLLDMEGTIEAVLFPDVYAQVQEKLQTDLPI 1056 Query: 1049 IVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPH 1108 +V+G + +DF +++T E I +A E + + + L + + L L+Q L + Sbjct: 1057 LVTGPLERNDFGSKIRVTRVET--IGQALETLYQTVVVRLQTDGLSVKDLEDLKQILLGY 1114 Query: 1109 RSGTIPVHLYYQRADARARLR-FGATWRVSPSDRLLNDLRGLIGSEQV 1155 G +P L + + G VSPSD L++ L G G + V Sbjct: 1115 -PGPVPAVLELKVMTRPYPVAVIGLHLNVSPSDELVHALSGRFGEQAV 1161 >UniRef50_B5YIK8 DNA polymerase III alpha subunit n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YIK8_THEYD Length = 1135 Score = 848 bits (2192), Expect = 0.0, Method: Compositional matrix adjust. Identities = 470/1135 (41%), Positives = 694/1135 (61%), Gaps = 66/1135 (5%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS FVHL +H++YS++DG K L+++A MPA+AITD NL G+V+F+ + A Sbjct: 1 MSMSEFVHLHIHTEYSLLDGAIKINELIEQAKKYNMPAVAITDHGNLFGVVEFFKKANKA 60 Query: 61 GIKPIVGADFNVQCDLLGDELT-------------HLTVLAANNTGYQNLTLLISKAYQR 107 G+KPI+G + V D+ HLT+L N GY+NLT L++++Y Sbjct: 61 GVKPIIGCEVYVAPQSRFDKTKINKDPGMPEEASFHLTLLVENEEGYKNLTRLVTRSYLE 120 Query: 108 GYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYF 167 G+ P ID + L N+GL+ LSG G++ +++ N + ++ F + +F Sbjct: 121 GF-YYKPRIDMELLSMYNKGLLALSGCLKGEIPYNIVYENIERAENTAKTLKDIFGNNFF 179 Query: 168 LELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDD 227 LE+ P++ +EL++ +PVVATND ++ SD AHEI + I G T+ D Sbjct: 180 LEIQSNSLPEQTIANRGLIELSKKFDIPVVATNDCHYLHKSDARAHEILLCIQTGKTIKD 239 Query: 228 PKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF--PTGD 285 KR + S + Y +S EEM F +IPEAL NT++IA+RCN +RLGE+ LP++ P G Sbjct: 240 EKRLKFQSDEFYFKSPEEMYSAFVEIPEALKNTLQIAERCNFKLRLGEHKLPKYNVPQG- 298 Query: 286 MSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVM 345 + E+YL K A+EGL+ER + +Y +RLE EL+VI +MGF YFLIV Sbjct: 299 YTAEEYLKKLAQEGLKERF---------KGNVAEDYIKRLEEELKVITEMGFASYFLIVW 349 Query: 346 EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405 +FI +++ +PVGPGRGS AGSLVAYALKITD+DP+++ LLFERFLNPER+S+PD DVD Sbjct: 350 DFINYARRKSIPVGPGRGSAAGSLVAYALKITDIDPIKYGLLFERFLNPERISLPDIDVD 409 Query: 406 FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465 FC ++R++VI++VA+ YG+D V+ IITFGTMAA+AV+RDVGR L PY VD+I+K+IP Sbjct: 410 FCKDRREEVIQYVAENYGKDRVAHIITFGTMAARAVVRDVGRALNIPYADVDKIAKMIPF 469 Query: 466 DPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDF 525 +L +A EP+L E+Y +E VK LID+A +LEG+ R+A +HA GVVI+P + D Sbjct: 470 -ACPSLEEALNLEPRLKELYNKNETVKELIDIALRLEGLARHASQHAAGVVISPEPLEDL 528 Query: 526 APLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLD 585 PLY + + ++QFD +E GL+KFDFLGL+TLT+I+ ++ + K + K+ +D Sbjct: 529 MPLYKNSGEETVISQFDMKALEDVGLLKFDFLGLKTLTVIDDTIKYV-KAQGKD----ID 583 Query: 586 IAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQS 645 + IPLDD +++ +L +TT VFQLESRGMK+L+KR++P FED+IALVAL+RPGPL S Sbjct: 584 LNNIPLDDSETYRLLSSGQTTGVFQLESRGMKELLKRMEPQRFEDLIALVALYRPGPLGS 643 Query: 646 GMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGA 705 GMVD+FI RK G V+++ LK +L+ TYG+ILYQEQVM+IA ++G+T+G A Sbjct: 644 GMVDDFIKRKKG-----LVPVEYELPELKDILDETYGVILYQEQVMKIANKIAGFTMGQA 698 Query: 706 DMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYA 765 D+LR+AMGKK PE MA + F +GA+KNGI E A +F+++ F YGFNKSHSAAYA Sbjct: 699 DVLRKAMGKKIPELMASLKEEFIQGAQKNGIPYEKAESLFNIMAAFGEYGFNKSHSAAYA 758 Query: 766 LVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHV 825 ++Y T +LKAHYP EF AA ++ +M +T K+V ++EC G++I PDIN F V Sbjct: 759 YLAYITAYLKAHYPQEFFAANLSNEMGDTNKIVKFINECKAWGIEIKGPDINESDRAFTV 818 Query: 826 NDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMS 885 + I +G+ A+KGVG ++ I+ R K F + D R DT+K+N++V+E LI + Sbjct: 819 KEKF-IRFGLEAVKGVGGSALQCILNEREKKK-FTSIDDFLTRLDTRKVNKKVIESLIKA 876 Query: 886 GAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWP 945 GAFD L P + +A H G G+ ++ + + W Sbjct: 877 GAFDSLYPQYTP------NQARAIAMHELLSFKGVKSSRGLFF--------THENIEAWD 922 Query: 946 EQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPT---------ERGKVITA 996 VL E+ +LG YLTGHP+ L+ + + + D+ T E I Sbjct: 923 NNTVLSEEKSSLGFYLTGHPMKP-LRPVLNKINVSTIADIFDTDEDDFVNNNEETHEIKI 981 Query: 997 AGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSF 1056 AG+V + ++G I T++D +GR+EV+++ + K+ +L + +++ G + Sbjct: 982 AGIVEEIKSKAKEKGVTAYI-TIEDETGRVEVVIYPELFKKFSNILTEKNAILIKGIIF- 1039 Query: 1057 DDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSG 1111 + K ARE+ D+ K ++I +D + ++L +RQ LE +G Sbjct: 1040 -KYPDSTKFLAREIEDLRNVDLKIKYEISIDCSDTEKAYRILKEVRQCLEERHNG 1093 >UniRef50_A9GWC5 DNA polymerase III, alpha subunit n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GWC5_SORC5 Length = 1212 Score = 845 bits (2183), Expect = 0.0, Method: Compositional matrix adjust. Identities = 513/1222 (41%), Positives = 721/1222 (59%), Gaps = 85/1222 (6%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F+HL VHS YS++DG + L +A +LGM A+A+TD N+ G ++ Y A GI I Sbjct: 5 FIHLHVHSQYSLLDGSLRVKDLAARAKSLGMRAVALTDHGNMFGAIQHYKACKDQGIGAI 64 Query: 66 VGADFNV---------QCDLLGDELT---HLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 +G + NV Q G + T HL +LAA+ GY+NL ++S+ + Sbjct: 65 IGCEVNVARSWGTAAGQVSRSGVDETPVDHLVLLAASEEGYKNLVRIVSQGHVDPASGLA 124 Query: 114 PIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIR 172 P + D + + N GLI L+G G V + +L E ++ + F P ++EL Sbjct: 125 PSVRLDTVAQHNAGLIGLTGCMGGVVAQRILEQGEGEGREALSRLRDCFQPGSLYVELQD 184 Query: 173 TGRPDEESYLHAAVELAEAR-GLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRP 231 G E+S L+ + A GLP+VATND F D + I T + Sbjct: 185 HGLV-EQSVLNGILARAAGDLGLPLVATNDAHFGAREDGEGQLYLSCIAANRTFAEASAA 243 Query: 232 RNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCN-VTVRLGEYFLPQFP--TGDMST 288 + S + +++ +EM LF D P+A+ +T+EIA+RC+ + ++LG+ LP FP +G + Sbjct: 244 HHGSFEMFLKPADEMMHLFRDHPQAVRSTLEIAERCSTLKLKLGKPMLPTFPLPSGFADS 303 Query: 289 EDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFI 348 Y A +GL +RLA + + R Y RL+ EL VI QM FPGYFLIV +FI Sbjct: 304 ASYFRHVAHDGLTKRLAQI--AQTGRKVDEATYRARLDVELNVIVQMDFPGYFLIVWDFI 361 Query: 349 QWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCM 408 +++KD+G+PVGPGRGSGAGSLVAYA++ITDLDPL ++LLFERFLNPERVSMPDFDVDFCM Sbjct: 362 KYAKDHGIPVGPGRGSGAGSLVAYAMEITDLDPLPYNLLFERFLNPERVSMPDFDVDFCM 421 Query: 409 EKRDQVIEHVADMYGRDA----VSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIP 464 ++RD+VI +V Y ++A V QI TF + A++VI+DV R + P +I+ LIP Sbjct: 422 DRRDEVISYVTKKYSKEADKPSVGQIATFHELKARSVIKDVARAMAFPANEAQKIASLIP 481 Query: 465 -PDPGM--TLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTK 521 PG+ T+ +A E EP+L + E+D V L+ A+KLEG+TR+AG HA GVVI+ Sbjct: 482 QKSPGIMYTIPEALEIEPKLKALKESDPTVAELLKQAQKLEGLTRHAGMHAAGVVISEGP 541 Query: 522 ITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKR---RAK 578 + D P C + G+ VTQ+ K D E AGLVKFDFLGL+TLT+I+ A+ ++N R AK Sbjct: 542 LWDHVP--CFKNGEQLVTQYYKDDAELAGLVKFDFLGLKTLTVIDIAVRLVNARPDLAAK 599 Query: 579 NGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALF 638 G+ D+ +PLDD ++ +LQ ETT VFQLES GM+ L K L+PD FED++A VAL+ Sbjct: 600 EGKR-FDVNTVPLDDTATYALLQSGETTGVFQLESSGMQQLFKDLKPDAFEDIVAAVALY 658 Query: 639 RPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLS 698 RPGPL +GMV +F+D KHGR+ I + H + +L+PTYG+I+YQEQVMQIAQ L+ Sbjct: 659 RPGPLGTGMVKDFVDCKHGRKPI-----EKMHPLVDELLQPTYGVIVYQEQVMQIAQKLA 713 Query: 699 GYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNK 758 GYTLGGAD+LRRAMGKKKPEEMAKQ++ F +G+ KNG+ AE A +IF L+E FAGYGFNK Sbjct: 714 GYTLGGADLLRRAMGKKKPEEMAKQKATFVDGSLKNGVKAEDAERIFGLLEYFAGYGFNK 773 Query: 759 SHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINS 818 SHSAAYAL++YQT +LKAHYP EF+ A+MTAD D EKVV ++ E G++ILPP+IN Sbjct: 774 SHSAAYALLTYQTAYLKAHYPVEFLCALMTADRDKIEKVVRIIAEGRAWGVEILPPEINE 833 Query: 819 GLYHF-----------------------HVND--DGEIVYGIGAIKGVGEGPIEAIIEAR 853 F V D D +I +G+GAI+GVGE +EAI+EAR Sbjct: 834 SKTDFTVVYSAKPATNGKRVAGTRRGGSRVRDPYDPKIRFGMGAIRGVGESALEAILEAR 893 Query: 854 NKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRL----GPHRAALMNSLGDALKAA 909 + GG F +LFD R D +++N+ V E L+ GAFD G RA + AL+ + Sbjct: 894 DAGGVFADLFDFAERVDPRRVNKGVFEALVQCGAFDASLHARGISRARAFAGIDRALERS 953 Query: 910 DQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQY 969 +K Q +F +A + E Y + + W + L E+++LG Y++GHP+++Y Sbjct: 954 RSASKERNSAQIGLFAAVASKSEVRLDDYPTAEDWDLRETLSREKQSLGFYVSGHPLDRY 1013 Query: 970 LKEIERY-VGGVR-LKDMHPTERGKVITAAGLVVAARVMVTK-RGNRIGICTLDDRSGRL 1026 ++ R+ V V L M R +V G+V R + K G +I L+D +GR+ Sbjct: 1014 GVDLNRFDVTAVSALAGMDAWARVRV---GGMVEGYRERIFKGGGGKIAFFVLEDTTGRV 1070 Query: 1027 EVMLFTDALDKYQQLLEKDRILIVSGQVSF---DDFSGGLKMTAR-------EVMDIDEA 1076 EV + ++ Y LL + +++SG++SF D+ + + R EV + +A Sbjct: 1071 EVKVREKQIESYADLLNRGEPVLISGKISFPMVDEGAEEAEAAPREPTLLLDEVQPLADA 1130 Query: 1077 REKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRAD-ARARLRFGATWR 1135 R +AI+L R + ++RL L G PV L Q D A A L G R Sbjct: 1131 ILAQTRSVAITLKSRSARREHIDRLGALLRAS-PGVCPVQLVIQLDDGAEAVLSLGRDLR 1189 Query: 1136 VSPSDRLLNDLRGLIGSEQVEL 1157 V P+D +L L L G + EL Sbjct: 1190 VEPNDAMLGRLEKLFGEKVAEL 1211 >UniRef50_C0QG07 DnaE n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QG07_DESAH Length = 1184 Score = 842 bits (2174), Expect = 0.0, Method: Compositional matrix adjust. Identities = 482/1177 (40%), Positives = 707/1177 (60%), Gaps = 50/1177 (4%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F HL VH+++S++DG + L+K+ M +AITD + G F GI+PI Sbjct: 8 FCHLHVHTEFSLLDGAIRLDALLKRCKEFNMDTVAITDHGTMFGTAPFNEKARKVGIQPI 67 Query: 66 VGADFNVQCDLLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDR 118 +G + V + ++ L HL +LA + GY NL L+S A G+ P IDR Sbjct: 68 LGCEVYVAPRSIRNKTAEDNKGLNHLVLLAKDREGYGNLCKLVSIAQFEGF-YYKPRIDR 126 Query: 119 DWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRTGRPD 177 + L + ++GLI LS GD+ + ++ L + +Y + F D +FLE+ + G Sbjct: 127 ELLTKYSKGLIALSACLKGDIPQKIIHNQMDLAFDSARYYLDTFGEDNFFLEIQKNGMEI 186 Query: 178 EESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQ 237 +E E+++ +P+VATND ++ AHE + I G TL+D R + S + Sbjct: 187 QEKVNQGLWEVSKKLSIPMVATNDCHYLSRDHVRAHEALLCIQTGNTLNDANRFKFDSDE 246 Query: 238 QYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT--GDMSTEDYL--- 292 Y +S +EM F P A+ NT+ IAKRCNV Y P++ + G+ S ED + Sbjct: 247 LYFKSADEMIADFKTYPGAIENTLLIAKRCNVEFGEKVYHFPRYTSAQGEKSGEDCVQTA 306 Query: 293 ----VKRAKEGLEERLAFL---FPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVM 345 ++A+EG E RL L P+ +E L Y ERL E+ VI MGFPGYFLIV Sbjct: 307 GEIFKRQAQEGFERRLKMLKRKNPNLDEAL-----YRERLAYEIGVILDMGFPGYFLIVA 361 Query: 346 EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405 +FI++S+++ +PVGPGRGS AGS+VAYA++IT LDP+ L+FERFLNP R+SMPD DVD Sbjct: 362 DFIRYSREHNIPVGPGRGSAAGSMVAYAMEITALDPIAHGLIFERFLNPSRISMPDIDVD 421 Query: 406 FCMEKRDQVIEHVADMYG-RDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIP 464 FC+E RD+V ++V D YG D VSQIITFG + AKAV+RDVGR L P VD ++KLIP Sbjct: 422 FCIEGRDEVYKYVIDRYGGADYVSQIITFGKLKAKAVVRDVGRALSVPLPEVDVLAKLIP 481 Query: 465 PDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524 D L +A + P++ E+ D K LID+A LEG+ R A HA GVVI+ + + Sbjct: 482 -DNAKNLGQALKDVPRIMELVNQDPVKKELIDIALLLEGLPRQASTHACGVVISDKPLVE 540 Query: 525 FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584 + P Y +EG+ VTQFD + VE GLVKFDFLGLR LT+I L+++ K ++ E P Sbjct: 541 YLPTYKGKEGE-VVTQFDMNFVEKLGLVKFDFLGLRNLTVIKNTLDLLKK---QSKEVP- 595 Query: 585 DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644 D+ I +DD ++++L R++TT VFQLES GMK+LI RLQP CF D++ALVAL+RPGPL Sbjct: 596 DLLEIDMDDPPTYELLARADTTGVFQLESSGMKELITRLQPACFSDIVALVALYRPGPLD 655 Query: 645 SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704 SGM D++++RKHGRE DV + L+P+L+ TYG+ILYQEQVM+IA VL+ Y++ Sbjct: 656 SGMADSYVERKHGRE-----DVVYLFPQLEPILKETYGVILYQEQVMKIAGVLANYSMAD 710 Query: 705 ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764 AD LR+AMGKK P M + R +F +GA++N ++ A ++FDL+EKF GYGFNKSHSAAY Sbjct: 711 ADGLRKAMGKKIPAMMEEHRGLFLKGAKENNLDGAKAAELFDLMEKFGGYGFNKSHSAAY 770 Query: 765 ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824 AL+ +QT +LKAHYP E+MAA+MT+DM N + VV +DEC + +LPPD+N F Sbjct: 771 ALICFQTAYLKAHYPLEYMAALMTSDMSNIDSVVKFIDECRNHEINVLPPDVNESESVFT 830 Query: 825 VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884 V I +G+ A+KG+G I++I+E R++ G F ++D C R + K+N+RVLE LI Sbjct: 831 VA-PAAIRFGLAAVKGIGSAAIDSIVEIRSQEGPFTSIYDFCERVNLTKVNKRVLEALIK 889 Query: 885 SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944 GAFD G R+ +M L DAL ++ + +A Q D+F E E + S S Sbjct: 890 CGAFDSTGSKRSQMMAVLEDALDHGNRIQREKADAQMDLFAD-TEGGEALPLSVPSMPDI 948 Query: 945 PE---QVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVV 1001 PE +L E+ETLG Y+TGHP+++Y + I+++ V + + T G+ + G + Sbjct: 949 PELDDNDLLAMEKETLGFYITGHPLDRYEEMIKKF-ANVNSETLVETPEGQSVRMGGALR 1007 Query: 1002 AARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSG 1061 +++ TK+G+ + L+D+ G +EV++F + + LL D +I+ +V + Sbjct: 1008 PLKILKTKKGDMMAFAALEDKKGSVEVVIFPELYQEVHYLLNDDTPVILQAEVQKRE--S 1065 Query: 1062 GLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHR-SGTIPVHLYYQ 1120 +K+ A +++ ID+A ++ + I++ + D +L RL+ L HR +GT V L Sbjct: 1066 NVKLLAEQIVPIDKAEAEWTASIVITMAAKGADISVLERLKGLL--HRFAGTCSVFLEIT 1123 Query: 1121 RAD-ARARLRFGATWRVSPSDRLLNDLRGLIGSEQVE 1156 D + ++ VSP L ++ L+G +E Sbjct: 1124 VEDGSSVVIQLSQDELVSPDPLLFQEVEALLGKNTIE 1160 >UniRef50_B9JDK3 DNA polymerase III alpha subunit protein n=54 Tax=cellular organisms RepID=B9JDK3_AGRRK Length = 1187 Score = 841 bits (2173), Expect = 0.0, Method: Compositional matrix adjust. Identities = 480/1120 (42%), Positives = 684/1120 (61%), Gaps = 67/1120 (5%) Query: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 P FVHLRVHS YS+++G ++ KAA PA+A+TD NL ++F G++ Sbjct: 40 PEFVHLRVHSAYSLLEGALPLKKILAKAAGDNQPAIAVTDTNNLFVALEFSQKAMDEGLQ 99 Query: 64 PIVGADFNVQCD--LLGDE---------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAA 112 PI+G ++ + + G++ L + + AA GY+ L L+S+AY G G Sbjct: 100 PIIGCQVSIDMEDGVEGEKRGPQQALAKLPSIVLFAATERGYERLVDLVSRAYLGGEGNQ 159 Query: 113 GPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELI 171 I WL E+ EG+I L+G G V +L G++ + + F DR ++EL Sbjct: 160 AVHITASWLEEIGTEGMIALTGSLGGPVDMALKEGHAPQALSRLLALKRLFGDRLYIELQ 219 Query: 172 RTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRP 231 R G D + + LA LP+VATN+ F D+DAH+ +A+ + D R Sbjct: 220 RHGTYDRR-HEQKMIALAYEHELPLVATNEAFFPTRDDYDAHDALMAVAHNAIVSDDTRF 278 Query: 232 RNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFP-------TG 284 R +P Y++S +M +LFA++PEAL NTVEIA+RC+ ++ + LP+F Sbjct: 279 R-LTPDHYLKSRADMAKLFANLPEALENTVEIARRCSFVLKTRKPILPRFTGAADDEEEA 337 Query: 285 DMSTEDYLVKRAKEGLEERLAFL--FPDEEERLKRRPEYDERLETELQVINQMGFPGYFL 342 D + L +A EGL++RLA L P E+ +Y ERLE EL VI +M FPGYFL Sbjct: 338 DRAESAELRAQAIEGLDQRLASLGMAPGYVEK-----DYRERLEFELSVIERMKFPGYFL 392 Query: 343 IVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDF 402 IV +FI+W+K + +PVGPGRGSGAGSLVAYAL ITD+DPL F LLFERFLNPERVSMPDF Sbjct: 393 IVADFIKWAKRHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDF 452 Query: 403 DVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL 462 D+DFC ++R++VI +V YGR+ V+QIITFG++ A+A +RDVGRVL PYG VD+I KL Sbjct: 453 DIDFCQDRREEVIRYVQAKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKL 512 Query: 463 IPPDPG--MTLAKAFEAEPQLPEIYEADEE--VKALIDMARKLEGVTRNAGKHAGGVVIA 518 +P +P L +A + EP+L E EAD+E V L+D+A+K+EG+ R+A HA G+VI Sbjct: 513 VPNNPANPTPLHQAIKEEPRLQE--EADKEPVVARLLDIAQKIEGLYRHASTHAAGIVIG 570 Query: 519 PTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAK 578 ++ P+Y D PVTQF+ VE AGLVKFDFLGL+TLT++ A++ + KR Sbjct: 571 DRPLSKLVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKTAVDFVAKRGIS 630 Query: 579 NGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALF 638 +D+A+IPLDDKK++DML R ET VFQ+ES GM+ + ++PDC ED+IALVAL+ Sbjct: 631 -----IDLASIPLDDKKTYDMLSRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVALY 685 Query: 639 RPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLS 698 RPGP+++ V N RKHG EEI + H ++ +L+ T G+I+YQEQVMQ+AQVLS Sbjct: 686 RPGPMENIPVYN--ARKHGEEEI-----ESIHPTIDYLLKETQGVIVYQEQVMQVAQVLS 738 Query: 699 GYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNK 758 GY+LG AD+LRRAMGKK EM +QR F +GA KNG++ + IFDL+ KFA YGFNK Sbjct: 739 GYSLGEADLLRRAMGKKIKAEMDQQRERFVDGAVKNGVSKGQSDVIFDLLAKFANYGFNK 798 Query: 759 SHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINS 818 SH+AAYA+VSYQT ++KAHYP EF+AA MT DM NTEKV + R+G++++ P I + Sbjct: 799 SHAAAYAIVSYQTAYMKAHYPVEFLAASMTLDMANTEKVNDFRQDAKRLGIEVIAPSIQT 858 Query: 819 GLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRV 878 F ++ I Y + A+KGVGE ++ I+E R F + D C R D K++NRRV Sbjct: 859 SFRRFETGEN-RIYYALAALKGVGESAVDHIVEVRGDQP-FAGIEDFCLRIDPKQINRRV 916 Query: 879 LEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSY 938 LE LI +GAFD RA L+ + + A + + GQ DMFG A PE+I S+ Sbjct: 917 LESLIAAGAFDCFEIDRAQLIGGIDRIMGYAQVAQENKRSGQHDMFGSAASGPEKI--SF 974 Query: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDM--------HPTER 990 PW L E + LG YLT HP++ Y +++ +R+++ Sbjct: 975 PPFTPWLASERLLREFQVLGFYLTAHPLDTYKSVLDK----MRVQNFADFSAAVKQGASN 1030 Query: 991 GKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIV 1050 G++ AG V++ + T+ GN++GI D SG+ E +LF++ L++Y+ +LE + +V Sbjct: 1031 GRL---AGTVISKQERKTRTGNKMGIFVFSDASGQFEAVLFSEVLNQYRDVLEVGKSFVV 1087 Query: 1051 SGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTD 1090 + Q D+ G+ + + ++E + + L + + D Sbjct: 1088 TAQA--DERPEGISLRLQTAQSLEEKSLQMQKALRVYVRD 1125 >UniRef50_Q1PZM1 Similar to DNA polymerase III, alpha subunit n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZM1_9BACT Length = 1155 Score = 840 bits (2171), Expect = 0.0, Method: Compositional matrix adjust. Identities = 463/1172 (39%), Positives = 713/1172 (60%), Gaps = 45/1172 (3%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M FVHL VHS+YS++DG K LV KA MPALA+TD N+ G ++FY A A Sbjct: 1 MDTNNFVHLHVHSEYSLLDGACKIKDLVSKALHFKMPALALTDHGNMYGAIEFYEAAQSA 60 Query: 61 GIKPIVGAD-FNVQCDLLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAA 112 GIKPI+G + + Q L E L+H+T+LA N GY+NL L + AY G+ Sbjct: 61 GIKPIIGYEAYVAQGGRLDKESKNGKETLSHITLLAENYEGYRNLLKLSTSAYLEGF-YY 119 Query: 113 GPIIDRDWLIELNEGLILLSGGRMGDVGRSLL--RGNSALVDECVAFYEEHFPDRYFLEL 170 P ID++ L + G+I LSG ++ R L R + A+ + + + E + ++LE+ Sbjct: 120 KPRIDKELLKSHSAGIICLSGCMASEINRHLSFDRHDDAM-NLAIEYLELFGENHFYLEI 178 Query: 171 IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230 P +E + AA ++ + +P+VATNDV +++ D AH+ + I+ G + D +R Sbjct: 179 QNNKIPLQEKLVSAAFKIGKTLNIPLVATNDVHYMNIDDAVAHDALLCINTGKRVSDRQR 238 Query: 231 PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF-PTGDMSTE 289 R + + Y ++ +EM LF +IP AL NT+ IA+RC+V + G+ LP+F P +S + Sbjct: 239 LRFDTNEFYFKNYQEMHALFKEIPHALENTLHIAERCDVKMDFGKLHLPKFTPPEGISNK 298 Query: 290 DYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQ 349 YL K +EG+ + + P ERL+ EL+VI + GF YFLIV +FI Sbjct: 299 AYLRKLCEEGVIRKYGAILP----------HISERLDHELKVIEKTGFVEYFLIVWDFIH 348 Query: 350 WSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCME 409 ++ +P GRGSGAGS+VAY L IT++DP+E DLLFERFLN ER+SMPD D+DFC E Sbjct: 349 YANTLNIP-ATGRGSGAGSIVAYVLNITNIDPIENDLLFERFLNAERISMPDLDIDFCAE 407 Query: 410 KRDQVIEHVADMYGRDA-VSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG 468 R+++I +V + YG D+ V+QIITFGTM AKAVIRDVGRVL P VD+I+KLIP Sbjct: 408 GREEIIRYVREKYGGDSNVAQIITFGTMKAKAVIRDVGRVLDIPLSEVDKIAKLIPNTLN 467 Query: 469 MTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPL 528 +TL +A E EP L I +A+++ K L D+++KLEG+ R+A HA G+VI+ +T++ PL Sbjct: 468 ITLEEALEQEPALKAICQAEKQFKELFDISKKLEGLCRHASVHAAGIVISDEPLTEYVPL 527 Query: 529 YCDEEGKHPVTQF-DKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIA 587 ++G TQ+ D+ V+ GL+K DFLG+R LT+I AL++I++ +D+A Sbjct: 528 --AKKGDAVTTQYYDEILVDKIGLLKADFLGVRKLTVIKRALQLIHE----TTREIIDLA 581 Query: 588 AIPLDDKKSFDMLQRSETTAVFQLE-SRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 IP+DDK ++ ML VFQ+E S+G K+L+K+L+PD F D++ LVAL+RPGPLQSG Sbjct: 582 KIPVDDKATYQMLSSGNVKGVFQVETSKGFKELLKKLKPDTFADILPLVALYRPGPLQSG 641 Query: 647 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 MVD+FI+RKHG+E V++ H +L+ +L+ TYG+ILYQEQVM+IA L+G+TL AD Sbjct: 642 MVDSFINRKHGKEA-----VEYIHPTLELILKETYGVILYQEQVMRIANRLAGFTLNEAD 696 Query: 707 MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 LR+AMGKKKPE MAK + F GA N I + A+KIF+L+E FAGYGFNKSHSAAYA+ Sbjct: 697 NLRKAMGKKKPEIMAKFKDQFVNGAISNDIPKKTAIKIFELMEFFAGYGFNKSHSAAYAV 756 Query: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 ++YQT +LK +YP ++M A ++ + NTEK++ +++C RM ++IL PD+N L F ++ Sbjct: 757 ITYQTAYLKTNYPLQYMTAQLSCEKQNTEKIIDYIEDCRRMNIEILKPDVNESLSDFIIS 816 Query: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 + +I +G+G++K G+ IE+I+ AR KGG F + D C R D + +N++V+E L+ SG Sbjct: 817 EGNKIRFGLGSVKNAGDKAIESIVSAREKGGKFSSILDFCKRVDLRTVNKQVIESLVKSG 876 Query: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF--GVLAEEPEQIEQSYASCQPW 944 +FD L RA L+ SL A++ K + GQ +F G + E + ++ PW Sbjct: 877 SFDSLSDDRARLLASLDSAMELGSAVNKGKRKGQRALFDIGSAMDVIETGNTAISNTTPW 936 Query: 945 PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004 E + E+E+LG Y + P+++Y ++I + + ++ G + G++ + Sbjct: 937 NENEIRQAEKESLGFYFSSSPLSEYEEKI-KLLATNSSSEISELPEGTDVIIGGIITDIK 995 Query: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLK 1064 TK+G+ + TLDD G ++ + F+ L +Y+ L + D ++ + G V + + +K Sbjct: 996 KSTTKKGDPMMYITLDDMEGAIKCIAFSKELKEYEPLAKIDAVVFICGNVGYKGSTPSVK 1055 Query: 1065 MTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQR-AD 1123 + E++ A ++ + + L D+ L +L+ ++ HR G P + + Sbjct: 1056 IN--ELIAGKNAFQRLVKSFGLRLEAAHFDETKLIQLKDLIKKHR-GACPFFIEIATPNN 1112 Query: 1124 ARARLRFGATWRVSPSDRLLNDLRGLIGSEQV 1155 +++ + + + +D L+ R L S+ + Sbjct: 1113 GSVQIKTSSQYSAAITDDFLSRTRELFDSQNL 1144 >UniRef50_D1BNX7 DNA polymerase III, alpha subunit n=3 Tax=Veillonella RepID=D1BNX7_VEIPT Length = 1135 Score = 840 bits (2170), Expect = 0.0, Method: Compositional matrix adjust. Identities = 480/1167 (41%), Positives = 699/1167 (59%), Gaps = 49/1167 (4%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL H+++S++DG+++ +V++A L PALAITD N+ + FY G+KPI Sbjct: 4 FVHLHSHTEFSLLDGISRLPDMVRRAKELNQPALAITDHGNMYAAIYFYKECMAQGVKPI 63 Query: 66 VGADFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIID 117 +G + V + D L HL +LA GY+NL ++SKA G P D Sbjct: 64 IGCEVYVTENNRFDRPEGRSRERLKHLILLAETMEGYRNLVKIVSKASTEGM-LYRPRAD 122 Query: 118 RDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRTGRP 176 RD L + ++G+I LS G++ + +L+ N + +Y E + D +FLE+ G P Sbjct: 123 RDLLRQYSKGIIALSACIQGEIPQYILQDNMEGAKRSIEWYIETYGKDNFFLEIQNHGLP 182 Query: 177 DEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSP 236 +E ++L++ GL +VA+ND ++ D DA +I+V I G + R + + Sbjct: 183 EEAKAQEELIKLSKEYGLGIVASNDFHYVLKEDADAQDIKVCISTGRRRAEVDRLKFPND 242 Query: 237 QQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF--PTGDMSTEDYLVK 294 + Y++S +EM ELF IP A+ NT++IA+RCNV E+ LP F P G+ S + YL K Sbjct: 243 EFYLKSGDEMAELFGHIPGAIENTLKIAERCNVEFNFDEHHLPHFDVPEGETS-KTYLRK 301 Query: 295 RAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDN 354 E + L+ + E L++R +Y EL VI MGF YFLIV +++++++++ Sbjct: 302 VC----EREIPRLYGETSEELQKRLDY------ELDVIGTMGFEDYFLIVWDYVRYAREH 351 Query: 355 GVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQV 414 + VGPGRGS AGS+VAY L IT LDPL++DLLFERFLNPERVSMPD D+DFC EKR Q Sbjct: 352 DILVGPGRGSAAGSVVAYLLGITGLDPLKYDLLFERFLNPERVSMPDIDIDFCYEKRGQA 411 Query: 415 IEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKA 474 IE+V YG+ VSQIITFGT AA+AVIRDVGRVL P V+RI+K+IP + G+TL KA Sbjct: 412 IEYVTRKYGQARVSQIITFGTEAARAVIRDVGRVLDLPLAEVNRIAKMIPNELGITLDKA 471 Query: 475 FEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLY-CDEE 533 + + +L +YEAD VK L D +KLEG+ RN+ HA GVVI+ + D P+ ++E Sbjct: 472 LQGK-ELKALYEADPNVKELFDFGKKLEGIARNSSTHAAGVVISADPLDDHVPVQNANDE 530 Query: 534 GKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDD 593 G VTQ+DK ++E GL+K DFLGLRTLT++ AL++I R + LD+ AIPLDD Sbjct: 531 GF--VTQYDKDNIEELGLLKMDFLGLRTLTVMGDALKLIKANRGID----LDLDAIPLDD 584 Query: 594 KKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFID 653 K + D+L + +T+ VFQLES G+ L+ L+P+ FED+I LVAL+RPGPL SGMV +FID Sbjct: 585 KAACDLLTKGDTSGVFQLESEGITKLVMDLKPEHFEDLIPLVALYRPGPLGSGMVADFID 644 Query: 654 RKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMG 713 R+HG++E++Y H L+P+L+ T+G+ILYQEQVMQIA + G++LG AD++RRAMG Sbjct: 645 RRHGKKEVTY-----LHPILEPILKDTFGVILYQEQVMQIASAMGGFSLGQADLMRRAMG 699 Query: 714 KKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLW 773 KKK + QR F +G+ KNGI+ +A ++FDL+ FAGYGFNKSHSAAYA ++YQT + Sbjct: 700 KKKESVLKAQRESFIQGSVKNGIDESVANEVFDLLVYFAGYGFNKSHSAAYAYIAYQTAY 759 Query: 774 LKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVY 833 LKAHY EFMAA MT+ M N +K+ ++ C + +K+L PDIN F V DD I + Sbjct: 760 LKAHYFPEFMAATMTSFMQNMQKLTYYINSCKKHNVKVLGPDINYSERSFAVQDDA-IRF 818 Query: 834 GIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGP 893 G+G IK VG+ I+ +I RN+ G + ++ D C R D K +N+R+LE LI G+ D Sbjct: 819 GLGGIKNVGDNAIDRLIRERNEHGLYTDIVDFCKRVDNKVVNKRLLESLIRCGSMDGFKE 878 Query: 894 HRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGE 953 +R L++ A + K A+G ++FG + E + I + + E L E Sbjct: 879 NRNQLLHMYESAQAVGAKEQKDAAMGTMNLFGDMEEAVDFI--PVPNVEDLSEDDKLKDE 936 Query: 954 RETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNR 1013 +E G Y+TGHP+ Y KE+E L + G+ IT GL+ +TKR Sbjct: 937 KEYTGFYITGHPLQGYAKELEGLFELGALAENPEQYDGQTITFGGLIENKSDRMTKRNEV 996 Query: 1014 IGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREV--M 1071 + I ++D SG V+ F + QQ L D I+ V G+V D+ G+++ A + + Sbjct: 997 MSILRIEDYSGAANVVAFPKVFSQSQQFLAVDMIVKVKGRVDADE--KGVQIIADRITPL 1054 Query: 1072 DIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG 1131 ++ ++ K S D + ++L R+ S +G++P LY R R R+ Sbjct: 1055 KVNYSQAKQVAIHIYSQYDTPENSEVLKRVLTST----AGSVPTSLYLHR--QRKRINLP 1108 Query: 1132 ATWRVSPSDRLLNDLRGLIGSEQVELE 1158 PSD + + ++G VE++ Sbjct: 1109 PNMCFDPSDESIKAIEAILGEGSVEVQ 1135 >UniRef50_C9KIR5 DNA polymerase III, alpha subunit n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KIR5_9FIRM Length = 1128 Score = 838 bits (2166), Expect = 0.0, Method: Compositional matrix adjust. Identities = 480/1091 (43%), Positives = 668/1091 (61%), Gaps = 50/1091 (4%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F HL VH+++S++DG ++ L++ ALGM ++AITD + G++ FY G+KPI Sbjct: 3 FTHLHVHTEFSLLDGASRIKELIETTKALGMDSIAITDHGAMYGVIDFYKEAKKQGVKPI 62 Query: 66 VGADFNV-------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDR 118 +G + V ++ G HL +LA N TGY+NL L+S A G P +D+ Sbjct: 63 IGCEVYVAPGARQEHREVNGVRYYHLILLAENQTGYRNLVKLVSLANVEGM-YYKPRVDK 121 Query: 119 DWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRTGRPD 177 D L + +EG+I LS G++ R++L+ N D V Y E F + +FLE+ G P+ Sbjct: 122 DLLRQYHEGIICLSACIAGEIPRAILQDNMERADALVREYLEIFGRENFFLEIQNHGLPE 181 Query: 178 EESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQ 237 E VELA+ + +VATND+ ++ D + H+I + I T DDP R R S Sbjct: 182 ERKANAGLVELAKKYDVGLVATNDLHYVHREDSEFHDILLCIQMNKTFDDPDRMRFASDD 241 Query: 238 QYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTED--YLVKR 295 Y++S EEM LF D+PEA+ANT +IA RC V G LP +P +D YL Sbjct: 242 YYLKSPEEMAALFPDLPEAIANTEKIAARCKVDFEFGHLQLPYYPIPAPYADDEAYLRHL 301 Query: 296 AKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNG 355 +E L R A + E+++ ERLE EL +I++MG+ YFLIV +FI +S+++G Sbjct: 302 CEENLPRRYATV----TEKIR------ERLEYELGIIHRMGYDSYFLIVWDFINYSREHG 351 Query: 356 VPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVI 415 + VGPGRGS AGS+VAY L IT+LDPL++DLLFERFLNPERV+MPD DVDF +R +VI Sbjct: 352 IGVGPGRGSAAGSIVAYLLGITNLDPLKYDLLFERFLNPERVTMPDIDVDFDYIQRGKVI 411 Query: 416 EHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAF 475 ++V + YG D V+QI+TFGTMAAK IRDVGRVL PY V I+KL+P + +TL KA Sbjct: 412 DYVKERYGYDHVAQIVTFGTMAAKGAIRDVGRVLNLPYAEVAEIAKLVPNELKITLDKAM 471 Query: 476 EAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGK 535 + + YE+ E+V LID+ARK+EG+ R++ HA GVVIA +TD+ P+ E Sbjct: 472 QESADFRKAYESSEDVHRLIDLARKIEGLPRHSSTHAAGVVIARHPLTDYVPVSISEGTL 531 Query: 536 HPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKK 595 VT++DK VE GL+K DFLGLRTLT+I+ + I K R + +DI IPL D Sbjct: 532 --VTEYDKDHVEELGLLKMDFLGLRTLTVISDTIANIEKSRHEK----VDIDKIPLTDGL 585 Query: 596 SFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRK 655 + ML +T AVFQ+ES GM L++ L P+ F D+I LVAL+RPGPL SGMV++FI + Sbjct: 586 TSKMLCEGKTGAVFQMESAGMTQLVRDLAPENFADLIPLVALYRPGPLGSGMVEDFIKGR 645 Query: 656 HGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKK 715 HG +E++Y H L+P+L+ T+G++LYQEQVMQI QVL+G+TLG AD+LRRAMGKK Sbjct: 646 HGEKEVTY-----MHPLLEPILKETFGVVLYQEQVMQIVQVLAGFTLGQADLLRRAMGKK 700 Query: 716 KPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 775 K E + Q+ F +G EKN I+A LA IFDL+ FA YGFNKSHSAAYALV++QT +LK Sbjct: 701 KHEILMAQKENFLDGCEKNHIDAGLANTIFDLLTHFADYGFNKSHSAAYALVAWQTAYLK 760 Query: 776 AHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGI 835 AHYPAEFMAA++T+ MD T KV ++ C RMG+KILPPDIN+ +F V+ D I +G+ Sbjct: 761 AHYPAEFMAAMLTSIMD-TPKVSTYIELCRRMGIKILPPDINASSAYFSVDGDA-IRFGL 818 Query: 836 GAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHR 895 A++ VGE IE + R GG F L D C R D + +NRRV+E LI GAFD G R Sbjct: 819 AAVRNVGETAIENVARIRETGGPFSSLSDFCRRVDMRVVNRRVIESLIKCGAFDSFGAKR 878 Query: 896 AALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQP----WPEQVVLD 951 + L+ L + A Q K GQ +F E IE++ P P+ L Sbjct: 879 SQLLAVLPQTVMEAAQQQKDAVSGQMGLFS-----DETIEETGMLQLPDIDEVPKAERLR 933 Query: 952 GERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHP-TERGK-VITAAGLVVAARVMVTK 1009 E+E G Y+TGHP++QY ++E R+ + P T R K V+ G++ A+ + TK Sbjct: 934 WEKEATGFYITGHPLDQYAAKLENL---PRIGSLQPDTVRDKQVVRIGGMLTEAKRITTK 990 Query: 1010 RGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTARE 1069 +G+ + T++D + +EV +F + LL D ++V G + D + +K+ A Sbjct: 991 KGDTMCFATVEDFTDSIEVTVFPRTFYQNMNLLVPDTPVVVQGHIDMTDET--VKLIADS 1048 Query: 1070 VMDIDEAREKY 1080 V + + R Y Sbjct: 1049 VWALKDYRFAY 1059 >UniRef50_A4J6X6 DNA polymerase III catalytic subunit, DnaE type n=28 Tax=Bacteria RepID=A4J6X6_DESRM Length = 1225 Score = 838 bits (2165), Expect = 0.0, Method: Compositional matrix adjust. Identities = 480/1189 (40%), Positives = 714/1189 (60%), Gaps = 75/1189 (6%) Query: 3 EPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGI 62 E +FVHL VH++YS++DG ++ + K+A GM +LAITD + G+V FY H G+ Sbjct: 9 ENQFVHLHVHTEYSLLDGASRINQMAKQAKESGMNSLAITDHGCMFGVVDFYKVCHKEGV 68 Query: 63 KPIVGADFNV-------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPI 115 KPI+G + V + L D+ HL +LA N GY+NL L+S Y G+ P Sbjct: 69 KPILGCEVYVAPRRRIDRTPKLDDQPNHLVLLAENQEGYKNLLKLVSLGYTEGF-YYKPR 127 Query: 116 IDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRTG 174 +D++ L ++GLI LS G+V +L + Y + F D +FLEL G Sbjct: 128 VDKELLQRYHKGLIALSACLAGEVADKILGSQPEKARQAAREYVDIFGKDNFFLELQDHG 187 Query: 175 RPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNY 234 ++ + +++A+ +P+VATNDV ++ + ++ + I G +++ P R + Sbjct: 188 YQEQRTVNRELLKIAKELQIPLVATNDVHYLKREHAEIQDVLLCIQTGKSINTPGRMKFE 247 Query: 235 SPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMST-EDYLV 293 S + Y++S EM LFA+IP+AL+NT+ IA+RC V + G+Y LP F + S+ YL Sbjct: 248 SQEMYLKSPHEMNLLFAEIPDALSNTLRIAERCQVDLEFGKYHLPYFTVPEESSPAQYLR 307 Query: 294 KRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKD 353 ++ EG +R ERLE EL VI +MG+ YFLIV +FI +++ Sbjct: 308 EKCLEGAIKRYGHC----------SGPVQERLEYELNVIGKMGYDEYFLIVWDFIHYARQ 357 Query: 354 NGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQ 413 G+ VGPGRGS AGS+V+YAL IT++DPL++ LLFERFLNPER+SMPD D+DF E+R + Sbjct: 358 KGIAVGPGRGSAAGSIVSYALGITNIDPLKYGLLFERFLNPERISMPDIDIDFDYERRGE 417 Query: 414 VIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAK 473 VIE++ YG D V+QIITFGTMAA+A IRDVGR L PYG VDR++KL+P + +T+AK Sbjct: 418 VIEYIVQKYGTDRVAQIITFGTMAARAAIRDVGRALDMPYGDVDRVAKLVPTELNITIAK 477 Query: 474 AFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEE 533 A + P L Y+ D EVK L+D A LEG+ R+A HA GVVI+ + ++ PL + Sbjct: 478 ALTSSPDLKAAYDQDPEVKRLVDTAAALEGMPRHASTHAAGVVISREPLVEYLPLSKTSD 537 Query: 534 GKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDD 593 G TQF + VE GL+K D LGLR LT+I+ + +I + + E LDI IPLDD Sbjct: 538 GL-VTTQFPMTTVEELGLLKMDLLGLRNLTVISETVNLIEQIK----ETKLDINTIPLDD 592 Query: 594 KKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFID 653 + +FDML R E VFQLES GM+++++ L+P+ FED++ALVAL+RPGPL SGMV++FI Sbjct: 593 QATFDMLTRGEGVGVFQLESSGMRNILRELKPNAFEDIVALVALYRPGPLGSGMVEDFIQ 652 Query: 654 RKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMG 713 RKHG+ ++ Y H L+P+L+ TYG+ILYQEQVM IA++++GY+LG AD LR+AMG Sbjct: 653 RKHGQNKVDY-----FHPDLEPILKETYGVILYQEQVMMIARIMAGYSLGQADALRKAMG 707 Query: 714 KKKPEEMAKQRSVFAEGAE--------KN--------GINAELAMKIFDLVEKFAGYGFN 757 KK + M R F G+ KN G + +LA K+FDL+E FAGYGFN Sbjct: 708 KKIAKIMGMHRDWFINGSTLDDKGKPLKNPIPGAVARGYSRQLAEKMFDLMEYFAGYGFN 767 Query: 758 KSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDIN 817 KSHSAAYALVSYQT +LKA+YP E+MAA++T+ DNT+KVV +DEC RMG+++LPPDIN Sbjct: 768 KSHSAAYALVSYQTAYLKANYPVEYMAALLTSVRDNTDKVVLYIDECRRMGIQVLPPDIN 827 Query: 818 SGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRR 877 +F +G I +G+ A+K VG G ++ II+ R K G F +DLC R DT+ NRR Sbjct: 828 LSRENF-TAANGAIRFGMAAVKNVGWGAVQEIIQIREKKGPFTGFYDLCGRLDTRIANRR 886 Query: 878 VLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQI-EQ 936 VLE LI +GA D G +R+ L+ L L+ A + + GQ +F +++E P Q+ E Sbjct: 887 VLESLIKAGALDAFG-YRSQLLAGLDTGLEHAARSQRDREQGQVSLFDLMSESPAQVMEL 945 Query: 937 SYASCQPWPEQVVLDGERETLGLYLTGHPINQY-----LKEIERYVGGVRLKDMHPTERG 991 + L+ E+E LGLY++GHP++++ E++R V L D G Sbjct: 946 KLPHVPRLTSRQQLEMEKEALGLYISGHPLSEFGWLLDQLEVQRVVHLAELPD------G 999 Query: 992 KVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVS 1051 + AG++ + + +++G+ + TL+D +G EV++F ++ LL+ L++ Sbjct: 1000 NNLLVAGIISTIKRITSRKGDPMAFLTLEDLTGSCEVVVFPQVYRRHFSLLDLKVPLLLK 1059 Query: 1052 GQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSG 1111 G++ ++ K+ A E+ ++ + L+ ++ ++++++L++ G Sbjct: 1060 GKL--NNNGEETKILAEEIQPLENVTCELWLRLSENVISKELEERLIS---------HPG 1108 Query: 1112 TIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSEQVELEFD 1160 + PV L+Y + +L VS S L L L+G + + L F+ Sbjct: 1109 SSPVFLFYPEDRHKVQLE----KEVSLSLNLKRSLTSLLGEDNILLRFN 1153 >UniRef50_Q2LTT3 DNA polymerase III alpha subunit n=3 Tax=Deltaproteobacteria RepID=Q2LTT3_SYNAS Length = 1155 Score = 838 bits (2164), Expect = 0.0, Method: Compositional matrix adjust. Identities = 471/1172 (40%), Positives = 686/1172 (58%), Gaps = 55/1172 (4%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL VH+ YS++DG + L+ KA GM A+A+TD N+ G + FY A GIKPI Sbjct: 6 FVHLHVHTQYSLLDGTIRIKDLISKAKEFGMQAVAMTDHGNMFGTIDFYQAACKEGIKPI 65 Query: 66 VGADFNVQCDL--------LGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIID 117 +G + V +GD HL VLA + GYQNL L S Y G+ P +D Sbjct: 66 IGCELYVAPKTRFEKTGGSIGDTARHLLVLAKDYQGYQNLMKLSSLGYLDGF-YYRPRVD 124 Query: 118 RDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDR-YFLELIRTGRP 176 ++ L + ++GLI LS G++ +L+ Y + F + ++LE++ G P Sbjct: 125 KELLKKYHKGLIALSACLNGEIANYILKDKFKDALLAAENYRQIFGEHNFYLEIMENGLP 184 Query: 177 DEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSP 236 ++++ +E++ +PV ATND +++ D ++HE+ + I G TLDD R R + Sbjct: 185 EQKTANEGLLEISRQLSIPVAATNDCHYLNREDAESHEVLLCIQTGKTLDDSDRMRFSTD 244 Query: 237 QQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFP-TGDMSTEDYLVKR 295 Y RS ++M +LF PEA+ NT EIA RCN++ G+++LP+F + D + ED L K Sbjct: 245 AFYFRSPDDMKQLFNYCPEAVENTKEIADRCNLSFEFGKFYLPKFEVSSDETLEDRLEKV 304 Query: 296 AKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNG 355 A +GL ER+ + + E + R Y++RL EL++I MGF GYFLIV +F+ ++K Sbjct: 305 AIQGLAERMPPIVDERGEEV--RGIYEKRLADELKIIKSMGFAGYFLIVSDFVSYAKRMN 362 Query: 356 VPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVI 415 +PVGPGRGS AGSLVAYAL ITD+DP+ +DL FERFLNP+R+SMPD D+DFC E R +I Sbjct: 363 IPVGPGRGSAAGSLVAYALTITDIDPIRYDLFFERFLNPDRISMPDIDIDFCPEGRGDII 422 Query: 416 EHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAF 475 +V + YG D VSQIITFG M A+AVIRDVGR L PYG VD I+KL+P ++L A Sbjct: 423 RYVTEKYGEDKVSQIITFGKMQARAVIRDVGRALNIPYGEVDSIAKLVPNILNISLDDAM 482 Query: 476 EAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGK 535 E EP+L E + DE+++ L+ +++ LEG+ R+A HA GVVI+ + + PLY K Sbjct: 483 EMEPRLQEAAKRDEKIRKLLKLSKSLEGLNRHASVHAAGVVISDVPLVERVPLY-----K 537 Query: 536 HP----VTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPL 591 P TQF +D+ GL KFDFLGL+TLT+I AL I + + LD+ +PL Sbjct: 538 SPKDDVTTQFSMNDLSTVGLTKFDFLGLKTLTVIKNALSFIKEGLGTD----LDLKNLPL 593 Query: 592 DDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNF 651 +D +F +L + ET VFQLES GMK+++ R++PDC ED+IAL+AL+RPGP+ M+ F Sbjct: 594 NDADTFKLLSKGETDGVFQLESDGMKEILVRMKPDCIEDLIALIALYRPGPMN--MIPEF 651 Query: 652 IDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRA 711 I RK G+ I Y + + L+ +L+ TYG+ILYQEQVMQIA V++ Y++ AD LR+ Sbjct: 652 IARKQGKTPIIY-----EIDQLEGILKETYGVILYQEQVMQIASVIAQYSMSEADTLRKV 706 Query: 712 MGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQT 771 MGKK +M +R F EGA+ NGI + KI++ +E FA YGFNKSHS AYA+V+YQT Sbjct: 707 MGKKDTAKMETERPKFMEGAKANGIPEQKTRKIWEQMETFASYGFNKSHSTAYAMVTYQT 766 Query: 772 LWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEI 831 +LKAHYP EFMAA++T++ DN +K++ + C MG+ ILPPDIN F V + I Sbjct: 767 AYLKAHYPVEFMAALLTSEKDNRDKIIKYIHVCKEMGIAILPPDINESQRDFSVAGN-RI 825 Query: 832 VYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRL 891 +G+ AIK VG G I+A+I +R KGG F D C RTD KK+N+RVLE LI GAFD Sbjct: 826 RFGLAAIKNVGLGAIDAMISSRQKGGEFLSFEDFCNRTDLKKVNKRVLESLIKCGAFDST 885 Query: 892 GPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASC-----QPWPE 946 G R LM+ + ++ + + K +A QA F + + + ++SYA+ Q W Sbjct: 886 GQRRRQLMSEYENIIEISQKRQKDKASKQASFFDDMEDLGVEEKRSYANSSAAEIQEWDP 945 Query: 947 QVVLDGERETLGLYLTGHPINQYLKEIERY-----VGGVRLKDMHPTERGKVITAAGLVV 1001 + +L E+E LG Y+TGHP+ Y +I G + D P ++ AG+V Sbjct: 946 KELLAHEKEFLGFYVTGHPLEGYASKISMVANTDSAGILEKGDKEP------VSLAGIVS 999 Query: 1002 AARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSG 1061 R + T++ + +L+D G +V+ F + K +L D + V G + D Sbjct: 1000 GIREVFTRKKEIMAYVSLEDLKGATDVIFFPEIYKKVTDILHGDAPIFVKGIL--DVAEE 1057 Query: 1062 GLKMTAREVMDIDEAREK--YARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYY 1119 +K+ A E + E + + + + D L++RL Q L + G +L+ Sbjct: 1058 NVKVIAEEASLLSETEYNPFSSVHFMVDIENNGTSDHLVDRLHQ-LTKNYKGKYDAYLHL 1116 Query: 1120 QRADARARLRFGATWRVSPSDRLLNDLRGLIG 1151 ++ G ++S S L + ++G Sbjct: 1117 INGSCETKIYLGDKAKLSISPELKREANIILG 1148 >UniRef50_A7HG87 DNA polymerase III, alpha subunit n=4 Tax=Anaeromyxobacter RepID=A7HG87_ANADF Length = 1217 Score = 837 bits (2161), Expect = 0.0, Method: Compositional matrix adjust. Identities = 496/1227 (40%), Positives = 711/1227 (57%), Gaps = 99/1227 (8%) Query: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 P FVHL +H+ YS++DG + L+K A GM +A+TD NL G V FY AG+K Sbjct: 2 PDFVHLHLHTLYSLLDGAIRIKDLLKTVQAKGMKTVAVTDHGNLFGAVDFYKKAKDAGVK 61 Query: 64 PIVGADFNVQCDLLGDELT-----HLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDR 118 PI+G + V D + + HL +LA N G+ NL L SKA+ G+ P ID+ Sbjct: 62 PIMGMEAYVAGDKGRHDRSERVGRHLILLAKNAEGWANLRFLSSKAFTEGF-YYDPRIDK 120 Query: 119 DWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRTGRPD 177 L + ++GL+ L+ G+V R +G+ Y + F P +FLE+ G + Sbjct: 121 QLLRDHSKGLVGLTACLAGEVPRLARQGDMDGARRVAREYRDIFEPGSFFLEVQSNGMRE 180 Query: 178 EESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQ 237 + +L G+P+VAT D ++ D AHE+ + I T DPKR R+ + Sbjct: 181 QLDVNAKLAQLGRDEGIPLVATADAHYVSRQDAKAHEVLMCIASNKTFQDPKRLRHETDG 240 Query: 238 QYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGD-MSTEDYLVKRA 296 +++S ++M + EA+ NT+ IA+ CNV ++LG+ FLP+F D +S E+++ K A Sbjct: 241 LFIQSPDDMVAALPEYREAIDNTIRIAEMCNVELQLGKSFLPRFQLPDGVSEEEWIEKLA 300 Query: 297 KEGLEERLAFL---FPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKD 353 K+GL+ R + +P + R Y +RLE EL VI +MGF GYFLIV +FI W K Sbjct: 301 KDGLDARFREIDGKYPHD------RDAYRQRLEMELGVIKKMGFSGYFLIVQDFINWGKQ 354 Query: 354 NGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQ 413 + +PVGPGRGSGAGS+VA++L+ITDLDPL ++LLFERFLNPERVSMPDFDVDFC +RD+ Sbjct: 355 HQIPVGPGRGSGAGSIVAWSLRITDLDPLRWNLLFERFLNPERVSMPDFDVDFCQNRRDE 414 Query: 414 VIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIP-PDPGMTL- 471 VI++V + YG+D V QIITFG++ A++VIRDV RV+G P+ D+I+KL+P P G T Sbjct: 415 VIDYVREKYGKDNVGQIITFGSLKARSVIRDVVRVMGLPFAEGDKIAKLVPDPVQGKTPP 474 Query: 472 -------AKAFEAEPQLPEIYE--------ADEE-------VKALIDMARKLEGVTRNAG 509 + AEP+L E+Y+ DE+ K L+D+A LEG+ R AG Sbjct: 475 LKELVFGSDKMPAEPRLEELYKKPTVISQWVDEKGVQHTVTTKDLLDIAMSLEGLNRQAG 534 Query: 510 KHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWAL 569 HA GVVIA + D+ P Y D++ + V+QF K +VE AGLVKFDFLGL+TLT+I+ AL Sbjct: 535 LHAAGVVIADKPLWDYVPAYKDDKSEMLVSQFAKEEVEAAGLVKFDFLGLKTLTVIDDAL 594 Query: 570 EMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFE 629 M+ + + + A IP+DD K ++++ R +T VFQ+ES G +++ +++P FE Sbjct: 595 RMVKQNHPEMKD--FTAADIPIDDPKVYELISRGDTAGVFQMESSGFTEMVIKMKPSRFE 652 Query: 630 DMIALVALFRPGPLQS------GMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGI 683 D+IA AL+RPGPL MVD +IDRKHGRE++ Y H L+PVLEPTYG+ Sbjct: 653 DVIAAGALYRPGPLDQKLEDGRTMVDVYIDRKHGREKVVY-----DHPKLEPVLEPTYGV 707 Query: 684 ILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMK 743 I+YQEQVMQI+QVL+GY+LG AD+LRRAMGKKK E MAK+R F GA K+G++ ++A Sbjct: 708 IVYQEQVMQISQVLAGYSLGQADLLRRAMGKKKAEVMAKERVGFLAGAVKSGVDEKVAGG 767 Query: 744 IFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDE 803 IFDL+EKFA YGFNKSHSAAY L++ QT WLKAHYP EFMAA+++++ NT+KVV + E Sbjct: 768 IFDLMEKFAAYGFNKSHSAAYGLLTVQTAWLKAHYPVEFMAALISSEASNTDKVVLHISE 827 Query: 804 CWRMGLKILPPDINSGLYHF----------------HVNDDGEIVYGIGAIKGVGEGPIE 847 G+++LPPD+N F + G I +G+GA++GVG+ ++ Sbjct: 828 ARADGIEVLPPDVNESDKDFGAFGPAESARPSTGPGRAANKGRIRFGLGAVRGVGDSAVQ 887 Query: 848 AIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALK 907 AI+EAR +GG F+ L+DL +R D+KK+N++V+E L+ SGA D G R L + A Sbjct: 888 AILEARAEGGPFKTLYDLASRVDSKKINKKVVEALVKSGALDFEGVPRWQLFAGIDSAFA 947 Query: 908 AADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQP-----------WPEQVVLDGERET 956 A A GQA +FG L Q+EQ +P WPE+V L E+E Sbjct: 948 AGASAQADRASGQASLFGALP--AAQVEQKPRYPRPGDVVGELTVEEWPERVRLAFEKEA 1005 Query: 957 LGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGI 1016 LG YLTGHP+ Y KE+ RY + KV + M ++G R G Sbjct: 1006 LGFYLTGHPLQGYEKEVRRYASTTCAAVANKRHGDKVSVVGVVAAVRERMNKEKGTRFGF 1065 Query: 1017 CTLDDRSGRLEVMLFT-----------DALDKYQQLLEKDRILIVSGQVSFDDF---SGG 1062 TL+D +G +EV+ + ++ + D L+V G+V ++ + Sbjct: 1066 LTLEDLTGTVEVVCWAARPANGQRPAQKGWTDWEVFCKSDEPLLVHGEVRINNREEENPR 1125 Query: 1063 LKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRA 1122 ++TA ++ + R++ +A+ + ++ + L+ L H G Sbjct: 1126 AEITALDIEPLALVRKQKTSEIALRIDADRLTKERTTDLKALLGRHPGGCAITVRAVIPE 1185 Query: 1123 DARARLRFGATWRVSPSDRLLNDLRGL 1149 ++ L A RV P D LL R L Sbjct: 1186 ESETTLSVAA--RVEPGDELLEAARRL 1210 >UniRef50_B6FXS8 Putative uncharacterized protein (Fragment) n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6FXS8_9CLOT Length = 1192 Score = 833 bits (2151), Expect = 0.0, Method: Compositional matrix adjust. Identities = 456/1109 (41%), Positives = 671/1109 (60%), Gaps = 59/1109 (5%) Query: 3 EPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGI 62 E F HL VH++YS++DG ++ LVK+A GM A+AITD + G + FY A GI Sbjct: 5 EKNFTHLHVHTEYSLLDGFSRVKTLVKRAKEKGMTAVAITDHGCMFGAIDFYKAAKAEGI 64 Query: 63 KPIVGADFNVQCDLLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPI 115 KPI+G + L D+ HL +LA + GY+NL ++SK+Y G+ P Sbjct: 65 KPIIGCEVYTAPRKLTDKDPNYDKHQGHLVLLAKDMVGYKNLIKIVSKSYVDGF-YYKPR 123 Query: 116 IDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPD-RYFLELIRTG 174 D D L + ++GLI LS GDV R+++ GN + Y + F + Y+LE+ G Sbjct: 124 TDMDELKKHSQGLIALSACLAGDVPRAIMNGNYDKARKLAMEYRDIFGNGNYYLEIQDHG 183 Query: 175 RPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNY 234 P+++ V L+ +P+VATNDV ++D D +I + + T+DD R + Sbjct: 184 LPEQKQVNTEVVRLSRELNIPLVATNDVHYVDKDDAKIQDILMCLQMQKTIDDENRMKFP 243 Query: 235 SPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF--PTGDMSTEDYL 292 S + Y++S EEM +LF ++ EAL NT EIA+RCNV +Y LP++ P G +T Y Sbjct: 244 SDEFYLKSREEMEQLFPELEEALDNTNEIAERCNVEFEFHKYHLPRYDVPEG-YTTNGYF 302 Query: 293 VKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSK 352 + ++GL ER P+E Y ERLE EL I MG+ YFLIV +FI ++K Sbjct: 303 RELCQKGLVERYGEDCPEE---------YKERLEYELNTIENMGYVEYFLIVWDFINFAK 353 Query: 353 DNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRD 412 N + VGPGRGS AGS+VAY LKITD+DP+++ LLFERFLNPERVSMPD D+DFC E+R+ Sbjct: 354 QNNIMVGPGRGSAAGSIVAYTLKITDIDPMKYSLLFERFLNPERVSMPDIDIDFCYERRE 413 Query: 413 QVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA 472 +VI++V YG D V+QIITFGTM AK IRDV RVL Y D+I+K IP + GMT+ Sbjct: 414 EVIDYVKRKYGEDHVAQIITFGTMGAKIAIRDVARVLNVSYNKADQIAKEIPFELGMTID 473 Query: 473 KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDE 532 KA ++ P L E+YE+D E + +ID++++LEG R+A HA GVVIA + ++ PLY + Sbjct: 474 KAMDSNPTLVELYESDAEAREVIDISKRLEGTLRHASTHAAGVVIARNPVDEYVPLYKHQ 533 Query: 533 EGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMIN-KRRAKNGEPPLDIAAIPL 591 + TQF + +E GL+K DFLGLRTLT+I AL++I R K +D + + Sbjct: 534 DS--ITTQFTMTTLEELGLLKMDFLGLRTLTVIRDALDLIELNRDIKGYTEHIDFSKMEY 591 Query: 592 DDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNF 651 DD + F+ L + T VFQLES GM++ +K+L+P+ FED++A ++LFRPGP+ S + + Sbjct: 592 DDDEVFETLSQGNTLGVFQLESSGMRNFMKQLKPNSFEDIVAGISLFRPGPMDS--IPTY 649 Query: 652 IDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRA 711 I+ K+ E+++Y + + L+P+LE TYG ++YQEQVMQ+ + L+GY+ G +D++RRA Sbjct: 650 IENKNNPEKVTYIN-----DKLRPILEVTYGCLVYQEQVMQVVRDLAGYSYGRSDLVRRA 704 Query: 712 MGKKKPEEMAKQRSVFAE------------GAEKNGINAELAMKIFDLVEKFAGYGFNKS 759 M KKK + M ++R F G +NGI+ E A KIFD + FA Y FNKS Sbjct: 705 MSKKKMDVMEEERQYFIHGKFDDEGNIEIPGCIRNGISEEDANKIFDDMIDFARYAFNKS 764 Query: 760 HSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSG 819 H+AAY +++Y+T +LK HYP EFMAA+MT+ M N++KVV + EC +G+ + PPDIN Sbjct: 765 HAAAYGVLAYETAYLKVHYPVEFMAALMTSIMGNSDKVVEYIRECNAIGIPVNPPDINKS 824 Query: 820 LYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVL 879 F V D I +G+ A+K VG IE I++ R + G F++ D R DTK N+RV+ Sbjct: 825 FSKFSVEGDS-IRFGLAAVKNVGVNIIENIVKEREENGEFKDFVDFAKRLDTKDTNKRVV 883 Query: 880 EKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLA----EEPE-QI 934 E LI GAFD++ +RA LM L++ K GQ +F + E PE Q+ Sbjct: 884 ESLIKCGAFDQISENRATLMAGYESVLESISMDRKKNVQGQISLFDAFSTQVEEAPEMQL 943 Query: 935 EQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIER--YVGGVRLKDMHPTERG- 991 + + + E+ L+ E+E LG+YL+GHP+++Y E++R + ++ ++ E+ Sbjct: 944 STNLPVVREFSEKERLNMEKEVLGMYLSGHPLSEYKSELDRKTSINMKKINELKEDEKTY 1003 Query: 992 -----KVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDR 1046 + + G+V+A R+M TKR + TL+D G +EV++F L K+ LL D Sbjct: 1004 MKLHDREVIMGGMVIAKRIMTTKRNEIMAFITLEDLYGTIEVVVFPQTLKKFNILLNDDS 1063 Query: 1047 ILIVSGQVSFDDFSGGLKMTAREVMDIDE 1075 I+++ G +S DD K+ AR++ DI+E Sbjct: 1064 IILIKGAISIDDDEA--KLIARDIKDINE 1090 >UniRef50_C0Z7W1 DNA polymerase III alpha subunit n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z7W1_BREBN Length = 1142 Score = 831 bits (2147), Expect = 0.0, Method: Compositional matrix adjust. Identities = 467/1160 (40%), Positives = 696/1160 (60%), Gaps = 42/1160 (3%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL VH++YS++DG A+ LVK+A+ LGM ALA+TD NL G + FY A AGI+PI Sbjct: 4 FVHLHVHTEYSLLDGAARIDTLVKRASELGMHALAMTDHANLYGAIPFYKACLEAGIRPI 63 Query: 66 VGADFNVQCDLLGDEL------THLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRD 119 +G + V L D + +HL VLA N TGY+NL L + A G P ++++ Sbjct: 64 IGMELYVIEGNLQDRVRNAPPPSHLIVLAENETGYRNLLRLATIANTDG-NYILPRLNKE 122 Query: 120 WLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYF-LELIRTGRPDE 178 L + +GLI LSG + G+V + LL G + E Y+ F +++F LEL G E Sbjct: 123 VLAKHTDGLIALSGCQQGEVAKLLLAGEADTAKEAALRYQRMFGEQHFYLELADHGLEVE 182 Query: 179 ESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQ 238 V+L++ G+P++ATN+V +I D H+I +AI +G T+ + R R + Q Sbjct: 183 RRLNTRLVKLSQETGIPLIATNNVHYIHREDHQQHDILLAIKEGKTIGEENRFRYETDQY 242 Query: 239 YMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGD-MSTEDYLVKRAK 297 Y++S EEM LFA P+ALANTV +A RC + + G + LP+FP + + YL + + Sbjct: 243 YLKSAEEMAALFAFAPQALANTVAVADRCKLDLTFGAHILPEFPLAEGQDSTQYLRELCE 302 Query: 298 EGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVP 357 +G ER + PE RL+ EL +I GF YFLIV +F++++ +NG+P Sbjct: 303 KGCLERYGEI----------TPEAQARLDHELAIITGTGFTDYFLIVWDFMRYAHENGIP 352 Query: 358 VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEH 417 GPGRGS AGSLVAY LKIT++DPL F LLFERFLNPERV+MPD D+DF +E+RD+VI + Sbjct: 353 TGPGRGSAAGSLVAYVLKITNVDPLRFQLLFERFLNPERVTMPDIDIDFSVERRDEVIHY 412 Query: 418 VADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEA 477 VA YG D V+QIITFGTMAA+A +RDVGR LG G VDR++K+IP PGMT+ +A + Sbjct: 413 VASKYGHDRVAQIITFGTMAARAAVRDVGRALGLSLGIVDRVAKMIPQSPGMTIERAMQI 472 Query: 478 EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHP 537 P + ++ +++ LI+ AR +EG+ R+A HA GVVI+ +T++ PL EG Sbjct: 473 NPDIGKLCAENKQAAQLIETARGVEGLPRHASTHAAGVVISREPLTNYVPLQTGNEGL-A 531 Query: 538 VTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSF 597 +TQ+ +E GL+K DFLGLR LTII L + ++ LD+ +P DD+K+F Sbjct: 532 LTQYPMEILEEVGLLKMDFLGLRNLTIIQETLRHLQEQGIS-----LDLDKLPTDDEKTF 586 Query: 598 DMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHG 657 ML R ETT +FQLES GM+++++ L+P +D+IA++AL+RPGP++ ++ +I KHG Sbjct: 587 RMLSRGETTGIFQLESSGMRNVLRDLKPSSLDDIIAVLALYRPGPME--IIPQYIAAKHG 644 Query: 658 REEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKP 717 + VQ+ H L+P+L T+G ++YQEQ+MQI+ L+G++LG AD+LRRA+GKKK Sbjct: 645 TSK-----VQYAHPVLEPILRETHGFMIYQEQIMQISSTLAGFSLGEADILRRAVGKKKR 699 Query: 718 EEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAH 777 E +A+QR F G + G EL +++DL+ +FA YGFNK+HS AYA+++YQ +LKA Sbjct: 700 ELLAEQREKFVAGCVRQGYGDELGNQVYDLIVRFADYGFNKAHSVAYAIIAYQMAYLKAT 759 Query: 778 YPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGA 837 YP FMAA+++ + + ++ +E R+ L +L PD+N L F V D I +G+ A Sbjct: 760 YPLAFMAALLSLSIGSQTRIAEYTEEARRLQLTVLGPDVNKSLAFFTVEQDA-IRFGLAA 818 Query: 838 IKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAA 897 +K VG G IE+I++ R KG +R++FD CAR D + +NRRV+E L + GA D L HR Sbjct: 819 VKNVGYGAIESIVKER-KGRPYRDVFDFCARVDARLVNRRVVESLTLCGALDSLPGHRNQ 877 Query: 898 LMNSLGDALKAADQHAKAEAIGQADMF-GVLAEEPEQIEQSYASCQPWPEQVVLDGERET 956 L+ L +A+ A+ Q ++F G P + Y P L ER+ Sbjct: 878 LLLLLDEAVGKANNKRIERDANQLNLFAGEEDAAPLREPAEYPEVPPLSHTQQLKEERDL 937 Query: 957 LGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGI 1016 +G+Y++GHP++Q+ R V + + R K + G++ AR + TK+G+ + Sbjct: 938 IGVYISGHPLDQFAHVASRPEVTV-ISSLGDVPRDKTVKVFGMITEARRIQTKKGDPMAF 996 Query: 1017 CTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDE- 1075 TL+D++ +E+++F KY QLLE+++I++ +V D +K+ A V D Sbjct: 997 ITLEDKTAPVELVVFPQVYAKYAQLLEREQIIVAEARV--DHQEDMVKLLASRVWDAQTL 1054 Query: 1076 AREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWR 1135 + K L + ++ Q D L +L + L + GTIPV L+Y+ RL A W Sbjct: 1055 PQPKSETVLFVKISAEQEHDSTLQKLSR-LFVEKKGTIPVILFYEGKRQTIRLP-EANW- 1111 Query: 1136 VSPSDRLLNDLRGLIGSEQV 1155 V + L R ++G + V Sbjct: 1112 VVVDESFLEQAREIVGPDSV 1131 >UniRef50_B3DUG0 DNA polymerase III, alpha subunit n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DUG0_METI4 Length = 1159 Score = 827 bits (2136), Expect = 0.0, Method: Compositional matrix adjust. Identities = 476/1177 (40%), Positives = 696/1177 (59%), Gaps = 62/1177 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL +HS+YS++D A+ +V KA LGMPA+A+TD NL G + FY A IKPI Sbjct: 5 FVHLHLHSEYSLLDASARIKDVVSKAKQLGMPAVALTDHGNLYGTIDFYKACVSQNIKPI 64 Query: 66 VGADFNVQCDLLGD------ELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRD 119 +G + + D + H+T+LA NN GY+NL LISKA+ G+ P ID + Sbjct: 65 IGCEAYITSGSRFDRKGSRSHIYHMTLLAKNNQGYKNLLKLISKAHLEGF-YYKPRIDLE 123 Query: 120 WLIELNEGLILLSGGRMGDVGRSLL----RGNSALVDECVAFYEEHFPDRYFLELIRTGR 175 L E GLI SG G++ + +L +G L +E ++ P+ ++LE+ G Sbjct: 124 LLKEHKAGLIGTSGCMNGEIPQKILEGDLKGAKKLAEELSRLFD---PNCFYLEIQNHGL 180 Query: 176 PDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYS 235 +E+ + A++ GLP+VATNDV +++ D H++ + I + DPKR + Sbjct: 181 KEEKEIREVLADFAQSLGLPLVATNDVHYVEQEDAQFHDVLLCIGTASQIHDPKRKKYPC 240 Query: 236 PQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF--PTGDMSTEDYLV 293 P+ Y ++ ++M ELF + P+A+ NT IA+ C+VT+ LG+ P + P+ + +YL Sbjct: 241 PEFYFKTPQQMAELFNEFPQAVENTANIARLCDVTIELGKNHFPSYTLPSPYKTHGEYLR 300 Query: 294 KRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKD 353 EGL++R + + E++K ERLE EL VI Q GF YFLIV +FI ++K Sbjct: 301 TLCYEGLQKR----YDNISEQIK------ERLEYELSVIEQTGFSSYFLIVWDFIHYAKK 350 Query: 354 NGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQ 413 G+PVGPGRGS AGSL AY L ITD+DP+++ L+FERFLNP+RVS PD D+DFC +R Q Sbjct: 351 EGIPVGPGRGSAAGSLTAYVLGITDIDPIKYGLVFERFLNPQRVSPPDIDIDFCYNRRSQ 410 Query: 414 VIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAK 473 VI++V YG +V+QIITFGT+ AK +RDV RVLG Y DRI+K+IPPDP +TL + Sbjct: 411 VIDYVRKKYGERSVAQIITFGTLGAKMAVRDVARVLGMSYQEADRIAKMIPPDPQLTLER 470 Query: 474 AFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEE 533 A E PQL +++E D + + ++ +A KLEG+TR AG HA GVVI+ + DF PL Sbjct: 471 ARELNPQLDQLWENDPQSREVLTIATKLEGLTRQAGVHAAGVVISEGDLLDFIPL---SR 527 Query: 534 GKHP--VTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPL 591 G+H VTQ+ + GL+K DFLGL+TLT+I+ L +I ++ LD PL Sbjct: 528 GEHNEIVTQWSMEPIAEIGLLKMDFLGLKTLTVISECLALIKEKE----NILLDPKQFPL 583 Query: 592 DDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNF 651 DDK ++++L R +T VFQLES GM +L+K+L+P ED+IALVAL+RPGP+++ + + Sbjct: 584 DDKNTYELLGRGQTIGVFQLESSGMVELVKKLKPGNIEDIIALVALYRPGPMEN--IPAY 641 Query: 652 IDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRA 711 DRK G+ I+Y H L+P+L+ TYG+++YQEQVMQ A VL+GY+LG +D+LRRA Sbjct: 642 ADRKLGKVPITY-----DHPLLEPILKDTYGVMIYQEQVMQAANVLAGYSLGESDLLRRA 696 Query: 712 MGKKKPEEMAKQRSVFAEGA-EKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQ 770 MGKKKPEEM KQR F +G EKN I E A++IF+ +EKFAGYGFNK+HSA Y ++Y Sbjct: 697 MGKKKPEEMRKQRDQFIKGCKEKNNIPEEKAIQIFETLEKFAGYGFNKAHSACYGYLAYV 756 Query: 771 TLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGE 830 T +LKA+YP ++ +++ + +TEK+ LV EC RMG+ +LPPDI+ F V + G Sbjct: 757 TAYLKANYPVFYLCTLLSYESGDTEKIELLVSECRRMGIGVLPPDISKSEVRFSV-EGGS 815 Query: 831 IVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDR 890 I +G+ AIK VGE EAI+E+R K G + LFDLC R + LN+++LE LI SGA D Sbjct: 816 IRWGLSAIKNVGEAAAEAIVESRKKRGSYHSLFDLCLRISGRTLNKKILESLIKSGACDS 875 Query: 891 LGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIE----QSYASCQPWPE 946 LG R L+ SL AL A +K GQ ++F EE I+ QS A + +P Sbjct: 876 LGRSRKELLESLPAALSAGSITSKERLSGQQNLF----EEHNFIDPTDRQSSAKGEDYPL 931 Query: 947 QVVLDGERETLGLYLTGHPINQYLKEIERYVGG--VRLKDMHPTERGKVITAAGLVVAAR 1004 + L E+E LG YL+ HP+++++ I + LK++ R + G++ Sbjct: 932 NIRLHWEKELLGTYLSSHPLDEWMSWIRLFQNEPISSLKELADNSR---LYVPGMITHIE 988 Query: 1005 VMVTKRGNRIGI-CTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGL 1063 +++ + L+D++G +EV+LF D L +V GQ+S + + Sbjct: 989 KKTSQKSKKPYFKLILEDQTGHIEVILFKDNLSSSLIDHWTTTAFVVDGQLSCRE--NAV 1046 Query: 1064 KMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRAD 1123 + + + I+EA + L I++ + Q +L + +R G IPV Y + + Sbjct: 1047 SIRSEHLYTIEEALQSLPTSLVITVKEGQGGADPWKKLYELFLENR-GDIPVVFRYVKNE 1105 Query: 1124 A-RARLRFGATWRVSPSDRLLNDLRGLIGSEQVELEF 1159 + G + V S + L L + LE Sbjct: 1106 GIICNIEVGREFFVKLSIPFMEKLFSLFTPGSINLEL 1142 >UniRef50_Q1IN02 DNA polymerase III, alpha subunit n=2 Tax=Acidobacteria RepID=Q1IN02_ACIBL Length = 1159 Score = 824 bits (2129), Expect = 0.0, Method: Compositional matrix adjust. Identities = 451/1097 (41%), Positives = 675/1097 (61%), Gaps = 40/1097 (3%) Query: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 P FVHL +H+DYSM+DG + LV + LG PA+A+TD N+ G V F A G+K Sbjct: 3 PEFVHLHLHTDYSMLDGASDVEKLVARVKELGQPAVAMTDHGNIYGAVHFQNAAKEKGVK 62 Query: 64 PIVGADFNVQCDLL-------GDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPII 116 I+G + + C GD+ HL VLA N GY+NL ++S+A G+ P + Sbjct: 63 AILGCELYI-CQKENHREAPEGDKYNHLIVLAENEEGYRNLVKIVSEASLHGF-YYKPRV 120 Query: 117 DRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRTGR 175 +++L E ++GLI LS G+V L G + + + F + ++LE+ G Sbjct: 121 SKNFLAEHSKGLIGLSACLKGEVAERLTEGKYEAAKKAATTFGDIFGANNFYLEIQDQGL 180 Query: 176 PDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYS 235 +E+ +L + G P+VATND ++ D A ++ V I G ++ D R + + Sbjct: 181 EEEKRIHQGLFDLEKDLGYPMVATNDSHYLCEDDSHAQDVMVCIQTGKSIHDTNRMKFST 240 Query: 236 PQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF--PTGDMSTEDYLV 293 Q +++S EM ++F LA T+EIA+RCNV + + P+F P G MS + Y Sbjct: 241 NQFFVKSAHEMSQVFTGADRVLARTMEIAERCNVKLEKVKNPFPRFDVPEG-MSIDSYFE 299 Query: 294 KRAKEGLEERLAFLFPDEEE-RLKRR-PEYDERLETELQVINQMGFPGYFLIVMEFIQWS 351 A+ G+ +R+ + + RL+ EY+ERL E+ I +M FPGYFLIV +FI+++ Sbjct: 300 DVARRGMAKRMNLMRDLQSAGRLRHTFAEYEERLNFEIDTIKKMQFPGYFLIVWDFIRYA 359 Query: 352 KDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKR 411 ++N +PVGPGRGS AGSLVAYA+ ITD+DPL+ +LLF+RFLNPER+SMPD DVDFCM +R Sbjct: 360 RENNIPVGPGRGSAAGSLVAYAMTITDVDPLQNNLLFQRFLNPERISMPDIDVDFCMNRR 419 Query: 412 DQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL 471 +VI++V + YGRD V+QIITFGTMAAKA I+D GR + PY VDR++K++P +T+ Sbjct: 420 GEVIKYVTEKYGRDQVAQIITFGTMAAKAAIKDCGRAMDIPYAEVDRVAKMVPTTINITI 479 Query: 472 AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCD 531 A + P L YE++ +VK LID A++LEG+ RN+G HA VVIAP +TD PL+ Sbjct: 480 DGALKDSPMLATAYESEPQVKELIDTAKRLEGLVRNSGVHASAVVIAPQPLTDLVPLH-K 538 Query: 532 EEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPL 591 + VT +D VE GL+K DFLGL TLTI++ AL++I++ + +++ +P Sbjct: 539 TKNDEIVTAYDMKAVEKMGLLKMDFLGLTTLTILDDALKLIDQTQGVK----IELEKLPF 594 Query: 592 DDKKSFD-MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDN 650 DDK++++ + T+ VFQ ES GM+D++++ +PD ED+ AL AL+RPGP+Q GM+D+ Sbjct: 595 DDKQTYERIFHSGYTSGVFQFESSGMRDVLRKYKPDTVEDLTALNALYRPGPIQGGMIDD 654 Query: 651 FIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRR 710 FI+RK GR ++ Y H+ LK +L T G+I+YQEQVMQIA L+GY+LG AD+LRR Sbjct: 655 FINRKWGRAKVDY-----FHDDLKTILVETLGVIVYQEQVMQIANKLAGYSLGDADLLRR 709 Query: 711 AMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQ 770 AMGKK +EM KQR F +GA G + +L + IFDL+E+FAGYGFNKSHSAAYAL++Y Sbjct: 710 AMGKKDAKEMEKQRDRFTKGAIDRGYDKQLTVHIFDLMEQFAGYGFNKSHSAAYALLAYH 769 Query: 771 TLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGE 830 T +LK H+P EFMAA++T+ +T+ VV ++EC MG+++ PPD+N L F D G Sbjct: 770 TAYLKTHFPIEFMAALLTSVSGSTDDVVKYINECRDMGIEVRPPDVNVSLASF-TPDQGA 828 Query: 831 IVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDR 890 I +G+ AIK +G IE+I+ AR G F F+ C + D + LN+RV+E LI SGA D Sbjct: 829 IRFGLSAIKNLGHNAIESIVTARQAIGKFSSFFEFCEKVDLRLLNKRVVESLIKSGAMDP 888 Query: 891 LGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQ--SYASCQPWPEQV 948 LG R+ L + A++AA + + GQ +FGV EEP ++ S + W E Sbjct: 889 LG-RRSQLFAVIDKAMEAAQKTQRDAESGQHGLFGVFDEEPVAGKKVDSLPNVPDWDEHQ 947 Query: 949 VLDGERETLGLYLTGHPINQYLKEIE--RYVGGVRLKDMH-PTERGKVITAAGLVVAARV 1005 L E+E LG ++TGHP+ +Y ++ R + LK+M T +G+ G++ +V Sbjct: 948 RLANEKEILGFFITGHPMEKYKDKLADFRAMSTEDLKNMRTSTAKGEEYYVGGVMSGVKV 1007 Query: 1006 MVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRI---LIVSGQVSFDDFSGG 1062 +K+G+ + TL+D G + + F + Y++L++K ++ ++V G + ++ Sbjct: 1008 AKSKKGDMYALGTLEDIHGAVSFLCFN---ENYKRLVDKLKLEVPVLVKGAIRIEE-DNP 1063 Query: 1063 LKMTAREVMDIDEAREK 1079 K+ +++ +D A K Sbjct: 1064 PKIMVSDIIPLDTAVPK 1080 >UniRef50_B0TI36 DNA polymerase iii alpha subunit, putative n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TI36_HELMI Length = 1208 Score = 821 bits (2120), Expect = 0.0, Method: Compositional matrix adjust. Identities = 461/1112 (41%), Positives = 667/1112 (59%), Gaps = 82/1112 (7%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 RFVHL VHS+YS++DG A+ LV +AA L MPALAITD + G+++FY G+KP Sbjct: 14 RFVHLHVHSEYSLLDGAARIDKLVDRAAELDMPALAITDHGVMYGVIEFYKKAKARGVKP 73 Query: 65 IVGADFNVQCDLLGD-------ELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIID 117 I+G + V + D + HL +LA + GY+NLT L+S+A+ G+ P +D Sbjct: 74 IIGCEVYVASRTMLDRDPQKDSDQHHLVLLAKDIEGYRNLTALVSQAHTEGF-YYKPRVD 132 Query: 118 RDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRTGRP 176 D L ++GLI LS G++ R LL E AFY + F D Y++EL P Sbjct: 133 HDRLARHSKGLIALSACLAGEIPRLLLNSQERQARERAAFYRDIFGCDNYYIELQDHDIP 192 Query: 177 DEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSP 236 ++ + + LA GL +VATNDV +++ D ++ + I G TL D +R + Sbjct: 193 AQKQVNRSLIRLAGELGLGLVATNDVHYVERKDAYIQDVLLCIQMGKTLQDTERMKFDGA 252 Query: 237 QQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM---------- 286 + Y++S EM LF ++PEAL N++ IA+ C++ + LP +P D Sbjct: 253 EFYLKSAREMAMLFGEVPEALFNSLAIAEACDLQFDFSKQHLPAYPIPDEPAFIQWRREH 312 Query: 287 -----------STEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQM 335 E YL +G+ R +R +Y RL ELQ I +M Sbjct: 313 ERAPWPGLPWGDAEQYLTYLCSQGMTWR----------GCAKRDDYRRRLAFELQTICRM 362 Query: 336 GFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPE 395 GF GYFLIV +F +++ G+ VGPGRGS AGSLVAY L ITD+DP+E++LLFERFLNPE Sbjct: 363 GFAGYFLIVQDFCAFARREGILVGPGRGSAAGSLVAYVLGITDIDPIEYNLLFERFLNPE 422 Query: 396 RVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGF 455 R+SMPD D+DF +R +VI++V YG D V+QIITFGTMAA+A +RDVGRVL P Sbjct: 423 RISMPDIDIDFDFVRRSEVIDYVVHKYGSDRVAQIITFGTMAARAAVRDVGRVLNLPLAD 482 Query: 456 VDRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGV 515 VD+++K IP + GMT+ KA E P+L + + D+ + L++ AR +EG+ R+A HA GV Sbjct: 483 VDKVAKAIPAELGMTIEKAIEISPELRALCQ-DQRISHLVETARAIEGMPRHASTHAAGV 541 Query: 516 VIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKR 575 VIAP+ + D+ P+ +G TQF K VE GL+K D LGL+TLT+I ++ I + Sbjct: 542 VIAPSPLIDYLPVQRGADGG-VTTQFPKDTVEEIGLLKMDLLGLKTLTLIGDVIDKIRRS 600 Query: 576 RAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALV 635 R L + +PLDD K+F +L R+++ VFQLES G++ +++ L+P+ F+D+IALV Sbjct: 601 RGLQ----LKLKDLPLDDPKTFQLLSRADSLGVFQLESSGLRAILRELKPNSFDDIIALV 656 Query: 636 ALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQ 695 AL+RPGPLQSGMVD+FI RKHG+ VQ+ H +L+P+L+ TYG+ILYQEQVM+IA Sbjct: 657 ALYRPGPLQSGMVDDFIRRKHGQTT-----VQYLHPALEPILKDTYGVILYQEQVMRIAS 711 Query: 696 VLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYG 755 L+G+TLG ADMLRRAMGKKKP+ +A R F EG + I+ + A IFDL+E FAGYG Sbjct: 712 ELAGFTLGEADMLRRAMGKKKPDVIAGLRQQFVEGCAAHHISEKTAGDIFDLMEFFAGYG 771 Query: 756 FNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPD 815 FNKSHSAAYAL++YQT +LKA+YP EFMA ++T+ D++EKV VDEC R+G+++LPPD Sbjct: 772 FNKSHSAAYALIAYQTAYLKANYPVEFMAGLLTSVADSSEKVAQYVDECQRLGIRVLPPD 831 Query: 816 INSGLYHFHVNDDG-----EIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTD 870 +N+ F V D +I +G+ A+K VG G I+AI+ AR GG F L D C R D Sbjct: 832 VNASEIDFSVVADPLTGGLQIRFGLAAVKNVGRGAIDAILLARETGGPFTSLDDFCTRID 891 Query: 871 TKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF------ 924 ++ NRRVLE LI +GA LG R L+ L ++ A + + A GQ ++F Sbjct: 892 NRQANRRVLESLIKAGALSSLGKRR-PLLQILDKCMEVAARRQRDLATGQMNLFDFGGFG 950 Query: 925 -----------GVLAE---EPEQIEQSYASCQP----WPEQVVLDGERETLGLYLTGHPI 966 G L++ + A P +P + +L E+E LG+Y +GHP+ Sbjct: 951 GEGGRGEPFEAGALSDFSGFSSGLSAETAVPLPEIADFPHREILAMEKELLGIYFSGHPL 1010 Query: 967 NQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRL 1026 + +E+ + + + + P + + G++ A R TK+G + TL+D SG + Sbjct: 1011 EELRPWLEQQI-SMTIARIQPDNDQQKVKLGGVIHALRRTTTKKGQLMAYFTLEDWSGGV 1069 Query: 1027 EVMLFTDALDKYQQLLEKDRILIVSGQVSFDD 1058 +V++F +K + ++ D +IV G++ +++ Sbjct: 1070 DVLVFPRTFEKCAEKIQDDAAVIVEGKIHYEE 1101 >UniRef50_UPI00017463A7 DNA polymerase III, alpha subunit n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017463A7 Length = 1155 Score = 818 bits (2112), Expect = 0.0, Method: Compositional matrix adjust. Identities = 479/1172 (40%), Positives = 701/1172 (59%), Gaps = 55/1172 (4%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL +H++YSM+DG + L+KKA +LGMPA+A+TD NL G ++FY + AGIKPI Sbjct: 5 FVHLHLHTEYSMLDGAVRIPDLMKKAKSLGMPAVAMTDHGNLFGAIEFYQEANKAGIKPI 64 Query: 66 VGADFNV-------QCDLLG-DELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIID 117 +G + + + D+ G +HLT+LAANN GY NL L++ A+ G P +D Sbjct: 65 IGCEIYLAPGSMWEKKDVTGRKRSSHLTLLAANNEGYANLVKLVTLAHLDGM-YHKPRVD 123 Query: 118 RDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRTGRP 176 ++ L + +EGLI LSG G++ +L + V + + F D ++LEL G Sbjct: 124 KEALKKHSEGLICLSGCISGEINEFILTDREDEARKTVQEFIDIFGKDNFYLELHNHGMA 183 Query: 177 DEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSP 236 ++ + E + GL +VA NDV F++ D +AH++ + I + D KR +YSP Sbjct: 184 QQQRCMLKLREFSREFGLKMVAANDVHFLNKEDHEAHDVMICIGTAANVHDEKR-LHYSP 242 Query: 237 QQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFL---PQFPTGDMST-EDYL 292 + Y ++ E+M ELF D EA T+EIA++CN+ ++L + PQFP + T E Y Sbjct: 243 EVYFKTAEQMRELFEDFEEACDTTLEIAEKCNIKLKLDASSIEKYPQFPPPEGQTREGYF 302 Query: 293 VKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSK 352 + ++G+ +F +ER ERL+ EL +IN+M F YFLIV +FI+W++ Sbjct: 303 RQLCEDGM------IFRYGKERAMNDAMLRERLDYELGIINKMNFTSYFLIVWDFIKWAR 356 Query: 353 DNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRD 412 D+G+PVGPGRGS AGSLVAY+L ITDL P+ F L+FERFLNPERVS PD D+DFC +R Sbjct: 357 DHGIPVGPGRGSAAGSLVAYSLGITDLCPIRFGLIFERFLNPERVSPPDVDIDFCQTRRP 416 Query: 413 QVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA 472 +VIE+V YG +VS IITFGTM AK+V+RDVGRVLG YG DR+SK+IP + + L Sbjct: 417 EVIEYVRQHYGERSVSHIITFGTMGAKSVVRDVGRVLGWSYGDADRLSKMIPTELNIDLE 476 Query: 473 KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDE 532 A E P+L E + + L A LEG+TRNAG HA G+VI + +F PL Sbjct: 477 SAVEKNPELKAALENESSTQQLWQYATFLEGMTRNAGIHAAGIVIGDQPLDNFIPLTRGS 536 Query: 533 EGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLD 592 EG+ V QF + G++K DFLGL+TLT+I A++ + R P ++ A+PLD Sbjct: 537 EGE-VVAQFAMGPLTDVGMLKMDFLGLKTLTVIKDAVDFVRLRF-----PDFNLDAVPLD 590 Query: 593 DKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFI 652 DK +++ML++ ET AVFQ+ES GM ++L+PD E++IAL+AL+RPGP+ ++ +FI Sbjct: 591 DKTTYEMLRKGETIAVFQMESGGMALTCRQLEPDKIEEIIALLALYRPGPMD--LIPDFI 648 Query: 653 DRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAM 712 RK G + + Y H L+ V + TYGI++YQEQV + A +L+GY+LG AD+LRRAM Sbjct: 649 KRKKGEQRVEY-----LHPLLEDVSKETYGILIYQEQVQKAANLLAGYSLGAADLLRRAM 703 Query: 713 GKKKPEEMAKQRSVFAEGA-EKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQT 771 GKKKPEEM KQR++F +G E N I A+ A IFDL+EKFAGYGFNKSHSAAY +V+Y+T Sbjct: 704 GKKKPEEMEKQRTIFVKGCGETNQIPAKKANDIFDLLEKFAGYGFNKSHSAAYGIVTYRT 763 Query: 772 LWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH------V 825 +LKA+YP EFMAAV++ ++++T+K+ G V EC RMG+ ILPPD+N F Sbjct: 764 AYLKANYPVEFMAAVLSYEVNSTDKLAGFVSECQRMGITILPPDVNKSSLKFAPECIEGS 823 Query: 826 NDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMS 885 + I YG+ A+K VGE + A I R K G F L D CAR D++ +N+R++E LI Sbjct: 824 DVPNAIRYGLAAVKNVGEAAMAAAIAERTKNGPFTSLEDFCARVDSRMINKRLMEPLIKV 883 Query: 886 GAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF--GVLAEEPEQIEQSYASCQP 943 G FD G RA + L + L A K G +F + + +S A P Sbjct: 884 GGFDWTGQDRAGMCFVLDEVLSNASSRQKERKAGMVSLFDDDTMGATKNTLAKS-AGPPP 942 Query: 944 WPEQVVLDGERETLGLYLTGHPINQYLKEIE-RYVGGVRLKDMHPTERGKV-ITAAGLVV 1001 W ++ ++ E+E LG +++GHP++ Y E +Y+ R+ D+ + +V + AGL+ Sbjct: 943 WKKEELMAFEKELLGFFVSGHPLDNYRHIYESKYI--TRIADVQEVKEERVSLRVAGLIQ 1000 Query: 1002 AARVMVTKRGNR-IGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFS 1060 V TK+ NR L+D SG +EV+ +++ +K++ LL + ++ + G+ D S Sbjct: 1001 RLEVKYTKKDNRAFATFALEDFSGTVEVISWSEGYEKFKDLLVEGGVIGMKGRCEKDSRS 1060 Query: 1061 GGLKMTAREVMDIDEAREKYARG----LAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVH 1116 ++MT +EV + + + G LA+ + + + L+ + + L H G PV Sbjct: 1061 ETIRMTVQEVKPLKPVKPEKPNGKPKPLALYMDVLKHGPKDLDAIHKILTDH-PGETPVQ 1119 Query: 1117 LYYQRADA-RARLRFGATWRVSPSDRLLNDLR 1147 L A A LR G + V + +L L+ Sbjct: 1120 LRIMTASGEEAVLRVGRSLNVEVNAQLQQALQ 1151 >UniRef50_C1F714 DNA polymerase III, alpha subunit n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F714_ACIC5 Length = 1173 Score = 817 bits (2111), Expect = 0.0, Method: Compositional matrix adjust. Identities = 458/1130 (40%), Positives = 682/1130 (60%), Gaps = 47/1130 (4%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F HL +H+DYS++DG LV A++G ++AITD N+ G V F+ A GIKPI Sbjct: 4 FTHLHLHTDYSLLDGACDVEKLVGHVASIGQTSVAITDHGNIYGAVHFFEAAKKKGIKPI 63 Query: 66 VGADFNV------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRD 119 +G + + + D GD+ HL VLA + GY+NL + S+A G+ P I + Sbjct: 64 LGCELYICQKEDHRADPQGDDYNHLLVLAESEEGYRNLVRITSEASLHGF-YRKPRISKK 122 Query: 120 WLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRTGRPDE 178 +L E GLI SG G+ ++L+ N A Y++ F +FLE+ G E Sbjct: 123 YLAEHAAGLIGFSGCLAGEFCQNLMADNYQAARATAAQYQDIFGRGNFFLEIQDQGLELE 182 Query: 179 ESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQ 238 + L + +P+VATND ++ D AH++ + + ++ DPKR + S Q Sbjct: 183 KKIHADMFRLEKDLDIPLVATNDSHYLCEDDHHAHDVLLCVQTAGSIHDPKRFKFDSDQF 242 Query: 239 YMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF--PTGDMSTEDYLVKRA 296 Y++S EM LF PE ++ T++ A+RCN+ + + P+F P G + + Y Sbjct: 243 YVKSAAEMERLFPHAPEVVSRTMQFAERCNLKLNKVDNPFPEFAVPPGH-TIDSYFEHVC 301 Query: 297 KEGLEERLAFLFPDEEER-LKRRP--EYDERLETELQVINQMGFPGYFLIVMEFIQWSKD 353 +EG ++RL ++R + R P +Y+ RLE E+ +I QM F GYFLIV +FI+++KD Sbjct: 302 REGFKKRLDTAIRHLQDRGILRSPISDYEARLEREIGIIKQMKFSGYFLIVWDFIRYAKD 361 Query: 354 NGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQ 413 + +PVGPGRGS AGSLV Y ++ITD+DPL+ LLFERFLNPERVSMPD D+DFCM +R + Sbjct: 362 HDIPVGPGRGSAAGSLVGYVMEITDIDPLQNVLLFERFLNPERVSMPDIDIDFCMNRRGE 421 Query: 414 VIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAK 473 VIE+V YGR+ V+QIITF TMAAKA I+DVGR L PYG VDRI+K+IP G+T+ + Sbjct: 422 VIEYVTRKYGREQVAQIITFNTMAAKAAIKDVGRALDMPYGDVDRIAKMIPATIGVTIDQ 481 Query: 474 AFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEE 533 A PQL E YE + +++ LID A++LEG+ R AG HA GVVIAP +TD PL + Sbjct: 482 ALTDSPQLQEAYEGNTQIRELIDTAKRLEGLVRGAGVHAAGVVIAPRPLTDLVPL-SRSK 540 Query: 534 GKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDD 593 VT +D VE GL+K DFLGL TLT+I+ L+MI K R + +D+A +PLDD Sbjct: 541 NDEIVTAYDMKAVEKMGLLKMDFLGLTTLTVIDDCLKMIRKNRGET----VDMAKVPLDD 596 Query: 594 KKSFD-MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFI 652 +++++ + R+ T+ VFQ ES GM+D+++R +P C ED+ AL AL+RPGP+Q GM+D+FI Sbjct: 597 QETYERVFHRALTSGVFQFESGGMRDVLRRYKPTCVEDLTALNALYRPGPIQGGMIDDFI 656 Query: 653 DRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAM 712 +RK GR ++ Y + L+ +L+ T G+I+YQEQVMQIA VL+GY+LG AD+LRRAM Sbjct: 657 ERKWGRRKVEY-----ELPPLETILKETLGVIVYQEQVMQIANVLAGYSLGEADLLRRAM 711 Query: 713 GKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTL 772 GKK PEEMAKQR F GA + + +KIFDL+E+FAGYGFNKSHSAAYAL++Y T Sbjct: 712 GKKNPEEMAKQRDRFVSGALEREFPKDKIVKIFDLMEQFAGYGFNKSHSAAYALLAYHTA 771 Query: 773 WLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIV 832 WLK HYP EFMAA++T+++ E VV + EC + + + PPD+ F + I Sbjct: 772 WLKTHYPVEFMAALLTSEISKPENVVKYIQECREIEIPVEPPDVLFSDADFTPHGKS-IR 830 Query: 833 YGIGAIKGVGEGPIEAIIEARNK----GGYFRELFDLCARTDTKKLNRRVLEKLIMSGAF 888 +G+ AIK VG I++I++AR K G F+ ++ C + D + +N+RV+E LI +GA Sbjct: 831 FGLTAIKNVGRNAIDSILDARGKLAAEGKSFQNFWEFCEKVDLRLMNKRVIESLIKAGAL 890 Query: 889 DRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYA---SCQPWP 945 D G RA LM S+ A++ A + + EA GQ+ +FG+ + + W Sbjct: 891 DSFG-RRAQLMASVDKAIERAQKAQRDEAAGQSGLFGLFDADAPASASPADDLPNVPDWE 949 Query: 946 EQVVLDGERETLGLYLTGHPINQYLKEIERYVG------GVRLKDMHPT-ERGKV----I 994 E + L E+E LG +++GHP+++Y +++ G + +K PT RG+ I Sbjct: 950 EALRLQSEKEVLGFFVSGHPLDRYAEKLRNLPGIIDTATALEMKPAPPTGRRGQSNENEI 1009 Query: 995 TAAGLVVAARVMVTKR-GNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQ 1053 AG++V +V +KR G+ +L+D +G+++++ F ++ L+ + ++V G Sbjct: 1010 AIAGMIVGLKVAKSKRSGDLYAQASLEDATGKIDLICFPRDYERLADSLKMEAPVVVRGA 1069 Query: 1054 VSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQ 1103 + ++ K+ + +D+ + K + I + +I + L L Q Sbjct: 1070 LRAEE-EAAPKLAISSIQALDDVKVKLPSNVRIRVQLDRISESTLEELHQ 1118 >UniRef50_A6G5Y5 DNA polymerase III, alpha subunit n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G5Y5_9DELT Length = 1255 Score = 813 bits (2101), Expect = 0.0, Method: Compositional matrix adjust. Identities = 481/1265 (38%), Positives = 716/1265 (56%), Gaps = 138/1265 (10%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F HL +H+ YS++DG + L K GM ++A+TD N+ G V+FY G+KPI Sbjct: 15 FAHLHLHTQYSLLDGAIRMNDLCGKVKERGMKSVAMTDHGNMFGAVQFYQQAKAHGVKPI 74 Query: 66 VGADFNVQCDLLGD-------ELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDR 118 G + + GD + H+ +LA N GYQNL L+S + G+ P IDR Sbjct: 75 FGCEAYIAD---GDAPAKTDRKNYHIVLLAKNEVGYQNLQRLVSYGHLEGF-YYNPRIDR 130 Query: 119 DWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRTGRPD 177 L E +EGL+ LS G + R + G+ E + Y + F P YFLEL G Sbjct: 131 KTLREHSEGLVGLSACLGGHISRMITGGDMDGARERIREYADIFEPGSYFLELQPNGMEL 190 Query: 178 EESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQ 237 +E +L +P+VATND +++ S+ AHE+ + + G T++D KR ++ + Sbjct: 191 QEKVNADLAQLGRDLDVPIVATNDCHYVNQSEAYAHEVLMCMGMGRTINDEKRLKHDCEE 250 Query: 238 QYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTE-DYLVKRA 296 ++++ ++M F PEA+ N IA+ CNV + LG+ LP F + + E +YL K A Sbjct: 251 FFIKTPQQMWGYFERYPEAMHNAARIARMCNVELSLGKPELPDFKLPEGTDEVEYLRKVA 310 Query: 297 KEGLEERLAFLFPDEEERLKRRPEYD---ERLETELQVINQMGFPGYFLIVMEFIQWSKD 353 +EGL++R+ E L + P+ D ERLE EL +I M FPGYFLIV +FI+ +K Sbjct: 311 REGLDQRIR-----ELRALGKAPDTDVYFERLERELGIIINMKFPGYFLIVWDFIKEAKK 365 Query: 354 NGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQ 413 GVPVGPGRGSGAGSLVAY+++ITD+DP+++DLLFERFLNPERVSMPDFD+DFCM++R++ Sbjct: 366 MGVPVGPGRGSGAGSLVAYSMRITDIDPMQYDLLFERFLNPERVSMPDFDIDFCMDRREE 425 Query: 414 VIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-- 471 VI++V D YG+ V QI TF ++ A+ ++RDV RV+ + ++K++P P ++L Sbjct: 426 VIQYVTDHYGKKRVGQIATFHSLKARGLLRDVCRVMEKLPAEANELAKMVPEGPKVSLSL 485 Query: 472 ------------------AKAFEAEPQLPEI-------YEADEEVKALIDMARKLEGVTR 506 A E + Q+ E EAD VK ++D+ LEG+ R Sbjct: 486 CMADPKAIRAKMKKEPEKAGKLEGKLQIAEAATKLRLRCEADPGVKQIVDIGCSLEGLNR 545 Query: 507 NAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIIN 566 +AG HA G+VI ++T+ P C + VTQ+ +DVE AGLVKFDFLGL+TLT+I Sbjct: 546 HAGMHAAGIVIGNRELTEHVP--CFKADDKIVTQYTMNDVEQAGLVKFDFLGLKTLTVIK 603 Query: 567 WALEMIN---------KRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMK 617 A++ IN + + P DI IP+DD + + M+ R ETT VFQLES G K Sbjct: 604 HAVDQINGLEGPWRLDPTQQGTADKPFDIDTIPMDDAEVYAMISRGETTGVFQLESTGFK 663 Query: 618 DLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVL 677 L+++L+PD FED+IA VAL+RPGPL+ GMVD FI+ KHGR +I YP HE L VL Sbjct: 664 KLLQKLKPDVFEDIIAAVALYRPGPLEGGMVDQFIECKHGRRKIEYP-----HELLADVL 718 Query: 678 EPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEK-NGI 736 TYG+ +YQEQVM AQ+L+G++LGGAD++RRAMGKKK +EM +QR++F EG E N I Sbjct: 719 RETYGVFVYQEQVMLAAQILAGFSLGGADLMRRAMGKKKVKEMERQRALFVEGCESVNNI 778 Query: 737 NAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEK 796 +A+ A +IFDL++KFAGYGFNKSHSAAY L++YQT +LK HYP FM +MT D D +E Sbjct: 779 DAKKANEIFDLIDKFAGYGFNKSHSAAYGLITYQTAYLKHHYPEAFMCGLMTCDKDKSEN 838 Query: 797 VVGLVDECWRMGLKILPPDINSGLYHFHV------------------------------- 825 VV + E M + +LPPD+N F+V Sbjct: 839 VVKFIAEARSMDITVLPPDVNESASDFNVVVRDRPELSEEELKKKKQLARKSKKVRRRQA 898 Query: 826 ----NDDGEIV---YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRV 878 +G+++ +G+GA++ VG +++I+ AR + G F+ +F+LC R D K++N+R Sbjct: 899 REDSRPEGKLLAIRFGMGAVRNVGGNAVDSILAAREEEGPFKNIFELCRRVDLKRVNKRT 958 Query: 879 LEKLIMSGAFDRL--GPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQ 936 LE L+ SGAFD + G HRA ++ ++ A++ + GQ +F + + +E+ Sbjct: 959 LEGLVHSGAFDSVSEGQHRAGVVAAIESAVEQGQSSQRDRESGQGGLFDAFSSDQVYVEE 1018 Query: 937 SYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITA 996 Y + W + L ER+ LG YLTGHP+++Y ++I+R+ VR+ ++ G+ + Sbjct: 1019 -YPKVREWAPKQRLLNERDALGFYLTGHPLDRYQQDIDRH-ASVRIGELRKELAGQEVVL 1076 Query: 997 AGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF----TDALDKYQQ---------LLE 1043 G++ R + TK G +G L+D+ GR+EV++F +D ++ + Sbjct: 1077 GGVITEMRQVTTKAGKTMGFFQLEDQFGRVEVIVFPRTWATPIDPDEESAPSWGDWLMAH 1136 Query: 1044 KDRILIVSGQVSFDDFSGG----LKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLN 1099 + + V+G++ + G K+ +V I + RE + + + L Q+DD+ + Sbjct: 1137 GEDPVFVTGKLEVEQNDMGEVSRYKILLAKVEPIAKVREARTKKVRLRLRAEQLDDRRIL 1196 Query: 1100 RLRQSLEPHR-------SGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGS 1152 L+ + HR S T+P Q + FG ++V D L L L G Sbjct: 1197 ALKHLVADHRGQCSMEMSVTVPGRYATQ-------VVFGDEFKVKADDSLFVALERLFGG 1249 Query: 1153 EQVEL 1157 EL Sbjct: 1250 PVAEL 1254 >UniRef50_B8GWS6 DNA polymerase III subunit alpha n=75 Tax=Alphaproteobacteria RepID=DPO3A_CAUCN Length = 1143 Score = 813 bits (2100), Expect = 0.0, Method: Compositional matrix adjust. Identities = 465/1117 (41%), Positives = 673/1117 (60%), Gaps = 42/1117 (3%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHLRV S YS+++G K + K AA MPA + D NL G +++ AG++PI Sbjct: 9 FVHLRVRSAYSLLEGAIKADQIGKLAAEAKMPAAGLADRANLFGALEYSSYAKDAGVQPI 68 Query: 66 VGADFNVQCDLLGDELTH-------LTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDR 118 +G V +G T L +LA N GY NL+ L S AY P++ Sbjct: 69 IGCAIPVVG--IGGGPTERWARAPTLMLLAQNERGYLNLSELSSIAYLDSAELPEPVVPW 126 Query: 119 DWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDE 178 + E +EGLILLSGG G V G +A +A F DR+++EL R G P + Sbjct: 127 AKVAEHSEGLILLSGGTDGPVDALFAAGKTAEASAALAEMHRVFGDRFYVELQRHGLPRQ 186 Query: 179 ESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQ 238 + V A +P+VATNDV F +DAH+ + I DG + +R R +P+ Sbjct: 187 AAAEPGLVNWAYDHDVPLVATNDVYFAKPGFYDAHDALLCISDGAFVGQDER-RRVTPEH 245 Query: 239 YMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTE-DYLVKRAK 297 + + EEM +LFAD+PEA NT++IA+RC V + LP FPTGD E + L +A+ Sbjct: 246 WFKPAEEMRKLFADLPEACDNTLDIARRCAFMVHKRDPILPSFPTGDGRNEAEELEHQAR 305 Query: 298 EGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVP 357 EGL+ RL L E EY +RL+ EL +I +MGFPGYFLIV +FI+W K +G+P Sbjct: 306 EGLKMRLEGLTLSAPEE-----EYWKRLDFELGIIKKMGFPGYFLIVSDFIKWGKAHGIP 360 Query: 358 VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEH 417 VGPGRGSGAGSLVA+ L ITDLDPL F LLFERFLNPERVSMPDFDVDFC E+R++VI + Sbjct: 361 VGPGRGSGAGSLVAWVLTITDLDPLRFGLLFERFLNPERVSMPDFDVDFCQERREEVISY 420 Query: 418 VADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAF 475 V + YGRD V+QIITFG++ A+AV+RDVGRV+ P G VDR+ K++P +P +TLA+A Sbjct: 421 VQEKYGRDRVAQIITFGSLQARAVLRDVGRVMQLPLGLVDRLCKMVPNNPAAPVTLAQAI 480 Query: 476 EAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGK 535 + EP+L + + D V A +D+A +LEG+ RNA HA G+VI +T PLY D Sbjct: 481 DLEPRLKQAKKEDANVSACLDVALQLEGLFRNASTHAAGLVIGDRPLTQLTPLYKDPRSD 540 Query: 536 HPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKK 595 P TQF+ VE AGLVKFDFLGL+TLT+++ A++ + KR + +D+ +P DD K Sbjct: 541 LPATQFNMKWVESAGLVKFDFLGLKTLTVLDRAVKHLKKRGFE-----IDLGKLPFDDAK 595 Query: 596 SFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRK 655 ++++L +T VFQLES+GM+D +++++ E++ AL++L+RPGP+ + +D F+D K Sbjct: 596 TYELLASGQTVGVFQLESQGMRDTLRKMRCGSIEEITALISLYRPGPMDN--IDTFVDCK 653 Query: 656 HGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKK 715 GR+ V H SL+ VL+ TYG+I+YQEQVMQIAQ+L+GY+LG AD+LRRAMGKK Sbjct: 654 FGRKP-----VDTLHPSLEAVLKETYGVIVYQEQVMQIAQILAGYSLGEADLLRRAMGKK 708 Query: 716 KPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 775 K EEM Q+ F GA++ + E + IF+LV KFAGYGFNKSH+AAYA +SYQT WLK Sbjct: 709 KKEEMDLQKIRFVSGAKEKNVPEEQSGSIFELVAKFAGYGFNKSHAAAYAFISYQTAWLK 768 Query: 776 AHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGI 835 A+ P EF AA M+ D+ NT+K+ + R G+ + PD+N F V ++GE++Y + Sbjct: 769 ANTPVEFFAASMSLDLSNTDKLAVFHQDARRFGITVRAPDVNRSGADFEV-ENGEVLYAL 827 Query: 836 GAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHR 895 GAI+ VG ++ ++ R +GG FR++FD R D +++N+R +E L +GAFD + +R Sbjct: 828 GAIRNVGLEAMKHLVAVRAEGGPFRDVFDFVERIDPRQVNKRAIENLARAGAFDSIHKNR 887 Query: 896 AALMNSLGDALKAADQHAKAEAI-GQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGER 954 A ++ S D L A Q A+ GQ +FG +P + + W + +LD E Sbjct: 888 AQIVAS-ADVLIAHAQSCHADRQGGQGGLFG---SDPGAGRPRLSKTENWNQVDLLDEEL 943 Query: 955 ETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERG-KVITAAGLVVAARVMVTKRGNR 1013 +G YLTGHP+ + + R + + M E G + G+V + ++ G + Sbjct: 944 SAVGFYLTGHPLEDMVGMLRRRRTVMLAEAMAQAEAGAEAFRMCGVVRRRQERASQSGEK 1003 Query: 1014 IGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDI 1073 +L D +G EV+ ++L K + +LE + + + + D G ++ + I Sbjct: 1004 FAFVSLSDPTGEYEVLYPPESLRKCRDVLEPGKAVAIKVRAKARD--GEVRFFGDDAEPI 1061 Query: 1074 DEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRS 1110 ++A E GL + L+ + ++ L++ LEP ++ Sbjct: 1062 EKAVENVVAGLRVHLSPSAAE---IDALKRRLEPAQA 1095 >UniRef50_D2RIQ1 DNA polymerase III, alpha subunit n=3 Tax=Veillonellaceae RepID=D2RIQ1_ACIFE Length = 1138 Score = 810 bits (2093), Expect = 0.0, Method: Compositional matrix adjust. Identities = 463/1072 (43%), Positives = 649/1072 (60%), Gaps = 45/1072 (4%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 +FVHL H+ YS++DG + LV+ A LGMPALAITD + G+++FY AGIKP Sbjct: 3 QFVHLHTHTQYSLLDGSCRIPELVQYAKELGMPALAITDHGVMYGVIEFYQECEKAGIKP 62 Query: 65 IVGADFNVQCDLLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIID 117 I+G + + D+ L HL +LA N TGYQNL L+S G+ P ID Sbjct: 63 IIGCEVYITSGSHLDKSLETRSKLYHLILLAENRTGYQNLMKLVSIGEVEGF-YYKPRID 121 Query: 118 RDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRTGRP 176 +D L +EGLI LS G+V R +LRG ++ + Y + F D Y+LE+ G P Sbjct: 122 KDVLRRYSEGLICLSACIAGEVPRHILRGELETAEKTMLEYLDIFGRDHYYLEIQNHGLP 181 Query: 177 DEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSP 236 +E + LA+ G+ +VATND+ +I D +I + I DP+R R + Sbjct: 182 EEATVRQELRRLAQKHGIKLVATNDLHYIRKEDASGQDILLCIQTNTRYLDPQRMRFNND 241 Query: 237 QQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTED-YLVKR 295 Y++S EEM ELF + EAL NT+EIA+RCNV + G LP+FP T D YL K Sbjct: 242 SYYLKSREEMEELFPEDQEALDNTLEIAERCNVQLEFGHLLLPEFPLPPGETMDGYLRKL 301 Query: 296 AKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNG 355 +EG R +P+++ ++R EY EL +I QMG+ GYFLIV +FI +S+ + Sbjct: 302 CEEGFPSR----YPEDDGTARKRMEY------ELGIIRQMGYSGYFLIVWDFINYSRRHD 351 Query: 356 VPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVI 415 +PVGPGRGS AGS+VAY IT +DPL+++L+FERFLNPERVSMPD D D C KR V+ Sbjct: 352 IPVGPGRGSAAGSIVAYLTGITSIDPLKYNLIFERFLNPERVSMPDIDTDICYVKRHLVV 411 Query: 416 EHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAF 475 +++A YG V+QIITFGT+AAKA ++DVGR + P V++++KLIP PG TL A Sbjct: 412 DYLARKYGESHVAQIITFGTLAAKAAVKDVGRAMDIPLNVVNQVNKLIPNTPGTTLKGAL 471 Query: 476 EAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLY----CD 531 E +L E+ + D + L+D A+K+EG+ R+ HA GVVI P ++TD+ PL D Sbjct: 472 EGSRELRELRDGDPSIAQLLDFAQKVEGMPRHTSTHAAGVVITPGELTDYVPLQITSSSD 531 Query: 532 EEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPL 591 +E ++ TQ+DK E GL+K D LGLRTLT+I+ AL+MI KN +DI I L Sbjct: 532 DEHEYICTQYDKDRSESLGLLKMDLLGLRTLTVIDDALKMIK----KNQGTEVDIRTIDL 587 Query: 592 DDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNF 651 D K+ ML + +T AVFQ+ES GM L+K+L P+ FED+I LVAL+RPGPL SGM ++F Sbjct: 588 HDPKTCRMLCKGDTAAVFQMESDGMTRLMKQLAPEGFEDLIPLVALYRPGPLGSGMAEDF 647 Query: 652 IDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRA 711 I +HGR Q H ++P++ TYG+ILYQEQVMQI L G+TLG AD+LRRA Sbjct: 648 IAGRHGRRT-----AQVLHPLMEPIVADTYGVILYQEQVMQIVSALGGFTLGEADILRRA 702 Query: 712 MGKKKPEEMAKQRSVFAEGAEK-NGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQ 770 MGKKK + + + F +GA+K +GI+ EL +IF L++ FAGYGFNKSHSAAYALV+Y Sbjct: 703 MGKKKAKLLDSMKEKFLDGAQKLHGISRELGSEIFALLQHFAGYGFNKSHSAAYALVAYH 762 Query: 771 TLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGE 830 T WLKA+YP E+MAA + + + +KV + C MG+++LPPDIN+ F V D Sbjct: 763 TAWLKANYPVEYMAAFLNSIITVADKVSWYIGVCRDMGIQVLPPDINTSEAGFSV-DGHT 821 Query: 831 IVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDR 890 I +G+GAIK VG+ + I+E R K G FR+ FD R D K+N+RV+E LI G+ + Sbjct: 822 IRFGLGAIKSVGDAAVTVILEERKKRGPFRDFFDFTRRVDLSKVNKRVVEALIKCGSMNG 881 Query: 891 LGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQP----WPE 946 G R+ L+ + AL+AA + GQ +FG E I + P P+ Sbjct: 882 FGLRRSQLLAIMDPALEAAASEQRDRITGQLGLFG-----EEDIASANTIPIPNLPEIPK 936 Query: 947 QVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVM 1006 +L ERE +G Y+TGHP++ Y + R +R + + + G+ I G++ R+ Sbjct: 937 AEILRLERELIGFYVTGHPLDAYRNALRRLTPLIRCTEENYKD-GERIAVGGIITDLRLR 995 Query: 1007 VTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDD 1058 TK G+R+ L+D +G L V+ F A + ++KDRI+++ G + D+ Sbjct: 996 STKNGDRMASFVLEDLTGSLTVIAFPRAYAASRANIDKDRIVMIQGILKLDE 1047 >UniRef50_B5YEZ7 DNA polymerase III alpha subunit n=2 Tax=Dictyoglomus RepID=B5YEZ7_DICT6 Length = 1127 Score = 810 bits (2091), Expect = 0.0, Method: Compositional matrix adjust. Identities = 452/1141 (39%), Positives = 702/1141 (61%), Gaps = 58/1141 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL VH++YS++DG + L+ +A MPA+AITD + G++ FY GIKPI Sbjct: 3 FVHLHVHTEYSLLDGACRIDELIDQALEFNMPAVAITDHGVMYGVIDFYKNAKEKGIKPI 62 Query: 66 VGADFNVQCDLLGD-----ELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 +G + V D +L HL +LA + GY+NL ++S ++ G+ P +D++ Sbjct: 63 IGCEVYVAPGSRFDKKQRTDLYHLILLAKDFEGYKNLIKIVSLSFLEGF-YYKPRVDKEL 121 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 180 L E ++G+I LS G++ +L+ N + Y + F + ++LEL G ++E Sbjct: 122 LREYSKGIIALSSCLAGEIPSYILQNNLEKAKNAIKEYLDIFGEDFYLELQNNGMEEQEY 181 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 ++L+ +P+VATNDV ++ D + H+I + I G L+D R R + + Y Sbjct: 182 VNSYLIKLSRELNVPLVATNDVHYLRKEDAEIHDILLCIQTGSKLNDKDRLRFKTNEFYF 241 Query: 241 RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF--PTGDMSTEDYLVKRAKE 298 +S EEM LF D+P+A+ NT++IA++CNV + L LP F P G+ + + Y + E Sbjct: 242 KSPEEMKALFKDVPDAIENTLKIAEKCNVEIPLNNVILPVFEVPEGE-TLDSYFERLCWE 300 Query: 299 GLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPV 358 G ++R P+ ERL E+ VI QMGF GYFLIV +F+ ++K G+PV Sbjct: 301 GAKKRFGEDIPEN---------IRERLSYEISVIKQMGFSGYFLIVQDFVNYAKSRGIPV 351 Query: 359 GPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHV 418 GPGRGS AGSLV+Y L IT+++P + L+FERFLNPERV+MPD D+DFC E+R++VIE+V Sbjct: 352 GPGRGSAAGSLVSYVLGITNIEPTRWGLIFERFLNPERVTMPDIDIDFCFERREEVIEYV 411 Query: 419 ADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAE 478 + YG++ V+QIITFGTMAA+A +RDVGRVL PY VDRI+KLIPP+ ++ +A Sbjct: 412 RNKYGKEHVAQIITFGTMAARASVRDVGRVLDVPYNEVDRIAKLIPPN--TSIEEALNTS 469 Query: 479 PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538 +L + E + + K +I++A+++EG R+A HA G+VI+ + ++ PL G V Sbjct: 470 EELRNLVENNPQAKRIIEIAKRIEGNARHASIHAAGIVISKDPLMEYVPLQV-MNGTDVV 528 Query: 539 TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598 TQ +++E GL+K DFLGLRTLT+I + K+ +N +DI I L D+K ++ Sbjct: 529 TQLPMTNLEELGLLKMDFLGLRTLTVIYDTI----KKIKENYGIEIDINNISLSDEKVYE 584 Query: 599 MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658 +LQ+ ET VFQLESRGM++L++ ++P+ FED+IA++AL+RPGPL G ++++I RK G Sbjct: 585 LLQKGETIGVFQLESRGMRNLLRDIKPEKFEDLIAVLALYRPGPL--GRLESYIKRKRGE 642 Query: 659 EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718 E+ V++ H +L+P+L TYG+I+YQEQVM+IA L+G+TLG AD+LRRAMGKKKPE Sbjct: 643 EK-----VEYMHPALEPILAETYGVIIYQEQVMEIAHRLAGFTLGQADVLRRAMGKKKPE 697 Query: 719 EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778 M +QR +F +GA + GI +A++IF+ + KFA YGFNKSHSAAYA VS+QT +LKA+Y Sbjct: 698 VMEEQRGIFVKGAVERGIPENVAIEIFEDMAKFAEYGFNKSHSAAYAFVSFQTAYLKAYY 757 Query: 779 PAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAI 838 P E+MA+++T+ ++T K+ + E R+G+KILPPD+N + F V G I +G+ AI Sbjct: 758 PKEYMASLLTSVKNSTTKLSKYIAEAKRIGIKILPPDVNESVVDFTVTPQG-IRFGLSAI 816 Query: 839 KGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAAL 898 K VGE EAI+E R++G F+ +FD R +K +N+R LE LI SGAFD G R AL Sbjct: 817 KNVGESVAEAIVEERSRGR-FKSIFDFIKRLSSKVINKRALESLIKSGAFDSFGYSRRAL 875 Query: 899 MNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPE---QVVLDGERE 955 + ++ L++A Q K IGQ + + + E+I PE +L+ E+E Sbjct: 876 LENIDKILESA-QVMKRAHIGQVSLIDLESLPQEEI------INNMPEFSIDEILEMEKE 928 Query: 956 TLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIG 1015 LG Y++ P + L++I + + D+ E G + G++ R ++ ++ ++ Sbjct: 929 MLGFYVSYDP-QEELRKISEKLFDYTIDDLVEVESGSQVIVPGILKNVREVIDRKNQKML 987 Query: 1016 ICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSF--DDFSGGLKMTAREVMDI 1073 TL+D +G E+ +F+ Y+ +L++ + +I+SG++ D+ +K+ +V D+ Sbjct: 988 FATLEDFTGEAEITVFSSVYGNYKDILKEGKKVIISGKLEIDRDESEERIKIIVDQVGDL 1047 Query: 1074 DEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGAT 1133 + + L I L D +I ++L ++R+ L+ ++ G +PV + R D A L Sbjct: 1048 E------SNILVIQL-DNKIGYEVLFKVREILK-NKKGLVPVII---RFDEHAILTAPDF 1096 Query: 1134 W 1134 W Sbjct: 1097 W 1097 >UniRef50_C9XRY5 DNA polymerase III alpha subunit n=38 Tax=Clostridia RepID=C9XRY5_CLODC Length = 1189 Score = 809 bits (2090), Expect = 0.0, Method: Compositional matrix adjust. Identities = 449/1105 (40%), Positives = 654/1105 (59%), Gaps = 58/1105 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F HL VH++YS++DG ++ L+K+A L M ++AITD + G++ FY GIKPI Sbjct: 5 FAHLHVHTEYSLLDGFSRVKKLIKRAKELNMSSIAITDHGCMFGVIDFYKTAIKEGIKPI 64 Query: 66 VGADFNVQCDLLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDR 118 +G + L D+ HL +LA N GY+NL ++S +Y G+ P +D Sbjct: 65 IGCEVYTAARGLRDKDPNYDKYQGHLVLLAKNMEGYKNLIKIVSTSYVEGF-YYKPRVDM 123 Query: 119 DWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRTGRPD 177 + L + N+G+I LS GDV R+L+ N + Y + F + +FLE+ P+ Sbjct: 124 EELKKHNKGIIALSACLAGDVARALMNRNYEKAKQFALDYRDIFGEENFFLEIQDHNLPE 183 Query: 178 EESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQ 237 ++ V+L++ G+P+VATNDV +++ D H++ + I G TL+DP R R S + Sbjct: 184 QKEVNSGLVKLSKETGIPLVATNDVHYVNKEDSKIHDVLMCIQMGKTLNDPNRMRFGSDE 243 Query: 238 QYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF--PTGDMSTEDYLVKR 295 Y++S EEM ELF EA+ NTV+IA CNV LP++ P G + E YL + Sbjct: 244 FYLKSREEMEELFPYALEAIDNTVKIADMCNVEFDFNTIHLPKYDVPEG-YTPETYLREL 302 Query: 296 AKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNG 355 GL+ER E ERL EL VI +MG+ YFLIV +FI +SK+N Sbjct: 303 CFNGLKERYD----------NPSNEILERLNYELDVIEKMGYVEYFLIVWDFINFSKENN 352 Query: 356 VPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVI 415 + VGPGRGS AGS+VAY LKITD+DP+++ LLFERFLNPER+SMPD D+DFC E+R++VI Sbjct: 353 IIVGPGRGSAAGSIVAYTLKITDIDPIKYSLLFERFLNPERISMPDIDIDFCYERREEVI 412 Query: 416 EHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAF 475 ++V YG D V+QIITFGTM AKA IRDVGRVL Y VD+++K IP GMT+ KA Sbjct: 413 DYVKRKYGDDHVAQIITFGTMGAKAAIRDVGRVLDIGYNKVDKVAKEIPFALGMTIDKAL 472 Query: 476 EAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGK 535 + P L E+Y+ D E K +I++++++EG+ R+A HA GVVI+ + ++ PLY ++ Sbjct: 473 DTNPNLKELYDQDPETKEIINISKQIEGMLRHASTHAAGVVISKNPVDEYVPLYKHQDA- 531 Query: 536 HPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRA-KNGEPPLDIAAIPLDDK 594 TQF + +E GL+K DFLGLRTLT+I L++I K R KN +D + + DD Sbjct: 532 -ITTQFTMTTLEELGLLKMDFLGLRTLTVIRDTLDLIEKNRVIKNYTEKIDFSKMDYDDP 590 Query: 595 KSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDR 654 K ++ML T VFQLES GM+ +K+L+PD FED++A ++LFRPGP+ S + +I Sbjct: 591 KVYEMLSSGNTLGVFQLESAGMRSFMKQLKPDNFEDIVAGISLFRPGPMDS--IPAYIKN 648 Query: 655 KHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK 714 K + DV + HE LKP++E TYG ++YQEQVMQ+ + L GY+ G +D++RRAM K Sbjct: 649 KSNPK-----DVTYLHEKLKPIMEVTYGCLVYQEQVMQVVRDLGGYSYGRSDLVRRAMSK 703 Query: 715 KKPEEMAKQRSVFAE------------GAEKNGINAELAMKIFDLVEKFAGYGFNKSHSA 762 KK + M ++R F G +NG+ E+A KIFD + FA Y FNKSH+A Sbjct: 704 KKMDVMEEERQYFIHGKFDEDGNIEIAGCIRNGVEEEIANKIFDDMIDFARYAFNKSHAA 763 Query: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 AY +++Y+T +LK +YP EFMAA++T+ M NT+KVV + EC + + +LPPDIN Sbjct: 764 AYGVLAYETAYLKTYYPVEFMAALITSVMGNTDKVVEYIRECKALEIDVLPPDINKSFSK 823 Query: 823 FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKL 882 F V D I +G+ A+K VG I II R G F +L DL R D K N+RV+E L Sbjct: 824 FSVEGDN-IRFGLAAVKNVGVNIINNIIAERESNGLFVDLVDLVKRLDQKDTNKRVIESL 882 Query: 883 IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVL--AEEPEQIEQSYA- 939 I GAFD + +RA+LM L++ K GQ +F +EE +Q Y+ Sbjct: 883 IKCGAFDNISENRASLMAGYESLLESVSMDRKKNVQGQISLFDAFGDSEEDSDFQQIYSL 942 Query: 940 -SCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVG--GVRLKDMHPTERGKV--- 993 Q + E+ L+ E+E LG+Y++GHP++Q+ KE++ +L + E + Sbjct: 943 PKRQEYEERERLNLEKEVLGMYVSGHPLSQFEKELQEKTSMDNGKLNSLKEEEESYLQMN 1002 Query: 994 ---ITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIV 1050 + G++V + TKR + L+D G +E+++F L KY +L +D I+ V Sbjct: 1003 ETDVIMGGMIVTKTIKTTKRNEIMAFIELEDLYGAIEIIVFPQLLQKYNVILNEDNIIYV 1062 Query: 1051 SGQVSFDDFSGGLKMTAREVMDIDE 1075 G +S + K+ ARE+ DI++ Sbjct: 1063 KGTLSIKEGENA-KLIAREIKDIND 1086 >UniRef50_Q6MLD4 DnaE protein n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MLD4_BDEBA Length = 1179 Score = 808 bits (2088), Expect = 0.0, Method: Compositional matrix adjust. Identities = 463/1129 (41%), Positives = 677/1129 (59%), Gaps = 80/1129 (7%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL VHS+YS+++ + + KKAAA+ MPA+A+TD N+ G V+F+ A +KPI Sbjct: 3 FVHLHVHSEYSLLEAACRVKAIAKKAAAMQMPAVALTDNGNMFGAVEFFFACKDNNVKPI 62 Query: 66 VGADFNVQC----------DLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPI 115 +G D + D + L LA NN GY+NL L S YQ G+ P Sbjct: 63 LGLDAYIAPGSRLEKKQDRDQVNTGPRRLVFLAQNNDGYRNLCKLSSIGYQEGF-YWKPR 121 Query: 116 IDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGR 175 ID + + + NE LI L+GG G+V S LR + +E F DR +LE+ RTG Sbjct: 122 IDYEVIQQYNENLICLTGGLRGEVAESFLREGPDAALAKIRQLKEIFNDRLYLEMCRTGV 181 Query: 176 PDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYS 235 + + +E ++ G+PVVA+NDV ++ D A E+ + I TL D R R + Sbjct: 182 AEWDRLNPFLLEASKITGVPVVASNDVHYMTQDDQMAQEVLICIGSNKTLSDESRFRLGT 241 Query: 236 PQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE------YFLPQFPTGD-MST 288 + Y++ E+M ELFAD+PEA+ANT++IA+RC+V +L + Y LP FPT D +S Sbjct: 242 DEFYLKKPEQMTELFADVPEAIANTLQIAERCDVKFKLKDDQGKPIYHLPTFPTDDGLSL 301 Query: 289 EDYLVKRAKEGLEERL------AFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFL 342 ++ + ++AK GL R + P++ + PEYD+RLE EL +I++MGF GYFL Sbjct: 302 KEDIARKAKAGLLVRFEEAAARGEMIPED-----KIPEYDKRLEYELGIIDRMGFNGYFL 356 Query: 343 IVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDF 402 IV +FI W+K N +PVGPGRGSGAGSLVAY L+ITDLDPL LLFERFLNPER+SMPDF Sbjct: 357 IVQDFINWAKVNDIPVGPGRGSGAGSLVAYVLRITDLDPLPNFLLFERFLNPERISMPDF 416 Query: 403 DVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL 462 D+DFC ++R +VI++V YG+++VSQIIT+G + A+A I+DVGRVLG + VD ++KL Sbjct: 417 DIDFCQDRRQEVIQYVTRKYGQESVSQIITYGKLQARAAIKDVGRVLGMTFPEVDAVTKL 476 Query: 463 IPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 IP G+ L +A E EP++ E+ E + V L+D+A+++EG+ R+AG HA GV+IA ++ Sbjct: 477 IPEKLGINLKEAMEMEPRIGEMMEMNPTVNTLMDLAQRVEGMVRHAGIHAAGVIIADGQL 536 Query: 523 TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP 582 APLY +G+ V Q+D E GL+KFDFLGL+TLT IN AL++I K R K + Sbjct: 537 VRHAPLYKGADGEQ-VVQYDMKHAEKIGLIKFDFLGLKTLTHINHALKLILKNRGKKIQS 595 Query: 583 PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 + IP+ D +F+M+ R +T VFQ E G+ D ++++P F D+ A+ +L+RPGP Sbjct: 596 QM----IPMTDAATFEMMSRGDTAGVFQFEGEGITDATRKIRPSSFADVTAITSLYRPGP 651 Query: 643 LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 + + + +F DRKHG+ + Y E + VL TYGI++YQEQVM IA ++GY+L Sbjct: 652 MAN--IPDFTDRKHGKAPVEY-----LLEDTREVLSETYGIMVYQEQVMGIASRIAGYSL 704 Query: 703 GGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSA 762 G ADMLRRAMGKK EEM + R F +GA + G + + + +FDL+ KFA YGFNKSH+A Sbjct: 705 GEADMLRRAMGKKIKEEMDQHRERFMKGAIERGHDKQRSSDLFDLMYKFADYGFNKSHAA 764 Query: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 AY++V+ QT WLK HYPAEF AA+++ ++ +TEK+V + + GL + P +N Y Sbjct: 765 AYSVVTIQTAWLKCHYPAEFFAALLSTELSDTEKIVKYSKDATKRGLTVRSPSVNFSDYL 824 Query: 823 FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNK--GGYFRELFDLCARTDTKKLNRRVLE 880 F V+ D EI +G+GAIKGVG+ +EAIIEARN F L + DT+++N++V+E Sbjct: 825 FDVHGD-EIYFGLGAIKGVGQNAVEAIIEARNNLPEKKFNSLDEFFNSIDTRRVNKKVIE 883 Query: 881 KLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYAS 940 LI +GAFD G HRA L+ L A K +GQ+ +F + ++ + Sbjct: 884 CLIKAGAFDGFGAHRAQLVAGYQKYLDRAIGLQKDREMGQSSLFDLGPSTETKV--TLEE 941 Query: 941 CQPWPEQVVLDGERETLGLYLTGHPINQY--LKEIERYVGGVRL---------------- 982 +PW L E+E LG YL+ HP+ + L E+ + L Sbjct: 942 VKPWARTASLTYEKEVLGFYLSDHPLKGFDTLSELWTTCKVIDLPAQMPAPGSPEAEALK 1001 Query: 983 ---KDMHPTERGKV-ITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKY 1038 KD + GK + AGL+ R ++TK+G R+ ++D +G E+++F D+ ++ Sbjct: 1002 AAKKDWKNRDAGKKRVVVAGLITELRELITKKGTRMAFGKVEDLTGSCELVIFPDSYARF 1061 Query: 1039 QQLLEKDRILIVSGQVSFDDFSGG------------LKMTAREVMDIDE 1075 + L +R ++V G + ++ S LK T R V+ +D+ Sbjct: 1062 EAQLRDERPVLVGGGLEVEEGSAKIMVDTVSPLEDILKKTKRMVLRLDK 1110 >UniRef50_C1DXC6 DNA polymerase III subunit alpha n=3 Tax=Sulfurihydrogenibium RepID=C1DXC6_SULAA Length = 1172 Score = 805 bits (2079), Expect = 0.0, Method: Compositional matrix adjust. Identities = 456/1160 (39%), Positives = 685/1160 (59%), Gaps = 55/1160 (4%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL +H+ YS++DG K L KKA G A+ +TD N+ G V+FY G+KPI Sbjct: 5 FVHLHLHTHYSLLDGAIKIKDLAKKAVEYGYKAVGLTDHGNIFGAVEFYQEMKSVGVKPI 64 Query: 66 VGADFNVQC-----------DLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGP 114 +G + D+L D+ HL + A + TG++NL L S +Y G+ P Sbjct: 65 IGMESYFTNNRFEKKGEGSDDILTDKNYHLILFAKDKTGFKNLMKLSSLSYTEGF-YYKP 123 Query: 115 IIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTG 174 ID + L + +EGLI + G + L +G + ++ F + + E+ G Sbjct: 124 RIDWELLEKYHEGLICQTACLKGFIPNLLSKGQYEEAKKYAKRLKDIFGEDLYFEIQVNG 183 Query: 175 RPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDD-PKRPRN 233 ++E ++LA+ G+ VV TND +++ D AH++ A+ TL ++ + Sbjct: 184 LEEQEEANKGIIKLAKELGIKVVGTNDSHYLNPEDQPAHDVIKALQMKETLQSLQEKGKA 243 Query: 234 YSPQQ-YMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE---YFLP--QFPTGDMS 287 + + + S EEM E F E L NT+EIA++CNV + E Y P Q P + Sbjct: 244 FKVKGLHFTSPEEMYEKFKGYEEYLKNTMEIAEKCNVEIDTAETRGYLFPKYQIPGIENP 303 Query: 288 TED----YLVKRAKEGLEERLAFLFPDEEERLKRRP--EYDERLETELQVINQMGFPGYF 341 T++ Y K +KEGLE+RL ++E+ L + EY ERL+ E+ VIN MGF YF Sbjct: 304 TQEDIKAYFEKLSKEGLEKRL-----EKEKNLSKEKLQEYRERLQYEIDVINNMGFAEYF 358 Query: 342 LIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPD 401 LIV +FI ++K+NG+PVGPGRGS GSLVAY L IT++DPL+ L+FERFLNPER+SMPD Sbjct: 359 LIVQDFINYAKNNGIPVGPGRGSAGGSLVAYCLGITEIDPLKHGLIFERFLNPERISMPD 418 Query: 402 FDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISK 461 DVDFCME R++VI +V D YG D+V+QIITF M +K VIRDV RVLG PY D+I+K Sbjct: 419 IDVDFCMENREKVIRYVKDKYGEDSVAQIITFNFMKSKMVIRDVARVLGFPYQEADKIAK 478 Query: 462 LIPPDP----GMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVI 517 +I P P +T+ + EA P ++YE D +VK L+D+ARKLEG R+ G HA G+VI Sbjct: 479 MILPGPIQGSTLTIDENLEANPDFRKLYETDPKVKQLLDLARKLEGSARHTGIHAAGIVI 538 Query: 518 APTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRA 577 AP + ++ P+Y D++G + TQF+ +E GLVK DFLGL+TLT ++ ++I +R Sbjct: 539 APGPLDEYVPVYRDKDG-NKATQFEMKTLEQLGLVKMDFLGLKTLTELDLMKKLIKERHG 597 Query: 578 KNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVAL 637 ++ +PLDD+ + +LQ +TT VFQLES+GM+DL+ RL+P F+++IA++AL Sbjct: 598 ----IEINYQDLPLDDENVYKLLQSGKTTGVFQLESKGMQDLLVRLKPTVFDEIIAILAL 653 Query: 638 FRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVL 697 FRPGPL SGMVD +I+RKHGR+ I YP E +K VL+ TYG+I+YQEQ+M ++ +L Sbjct: 654 FRPGPLMSGMVDEYIERKHGRKPIEYP-----FEEVKEVLKETYGLIVYQEQIMFMSNIL 708 Query: 698 SGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFN 757 SG+++ AD LR+A+GKK PE MAK + F EGA + G + E K++D +EKFA Y FN Sbjct: 709 SGFSMAEADTLRKAIGKKNPETMAKMKGRFVEGAVERGFDREKVEKLWDDIEKFASYSFN 768 Query: 758 KSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDIN 817 KSHS AYA ++Y T W+K +Y EF A ++ ++ N K + L+ + G+K+LPPD+N Sbjct: 769 KSHSTAYAYLTYWTAWVKTYYTDEFFAVKLSTEV-NDSKFLNLLIDMENFGIKLLPPDVN 827 Query: 818 SGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRR 877 + F++ I +G+ IK VGE + I++ R K G F ++FD C R DTK N+R Sbjct: 828 KSMAEFYIESPKNIRFGLARIKNVGESSAKEIVKEREKNGEFVDIFDFCERLDTKTANKR 887 Query: 878 VLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQS 937 VLE LI +GAFD RA L+N++ A+ + + +++ GQ +F + ++ + Sbjct: 888 VLESLIKAGAFDFEKVDRAILLNNVDKAISSGQKARESKMAGQNSLFALTTTPVVNVKHT 947 Query: 938 Y--ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGV-RLKDM----HPTER 990 Y + E+ L E+E LG YL+GHPIN Y KE++ V + + D+ E Sbjct: 948 YEDTGIKKLTEREKLKYEKEVLGFYLSGHPINAYKKELKGKVAKIGEIYDLVFSGKRPEG 1007 Query: 991 GKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIV 1050 + AG+V ++ TK GN + + + D +G+++ F + L+ + LL+ D I+++ Sbjct: 1008 DLKVKFAGVVDEIKLKKTKSGNTMMMFSFSDETGQIDCRAFPEKLEN-KDLLKDDNIVVL 1066 Query: 1051 SGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRS 1110 G + DD + M V I E K +G+ I + + + LL +L+Q + HR Sbjct: 1067 EGFIEIDDEQEKISMNVVNVEPI-ENFLKDIKGVKIKIPKEKAMNGLLPKLQQLFKEHRG 1125 Query: 1111 GT-IPVHLYYQRADARARLR 1129 + +H+Y + + +L Sbjct: 1126 DKDVVIHIYDRNFECEIQLH 1145 >UniRef50_B9XPL1 DNA polymerase III, alpha subunit n=1 Tax=bacterium Ellin514 RepID=B9XPL1_9BACT Length = 1224 Score = 804 bits (2076), Expect = 0.0, Method: Compositional matrix adjust. Identities = 473/1202 (39%), Positives = 686/1202 (57%), Gaps = 78/1202 (6%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS FVHL +H++YS++DG + L+ KA L P+LAITD L G + FY A Sbjct: 1 MSHADFVHLHLHTEYSLLDGACRLDRLMDKAHELKFPSLAITDHGVLFGAIDFYKAARDK 60 Query: 61 GIKPIVGADFNV---------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111 GIKPI+G + V + D HL +LA + GY+NL L++ A+ GY Sbjct: 61 GIKPIIGCEVYVAPHSRTEKKSANGGRDVYNHLVLLAKDEIGYKNLIKLVTAAHLEGY-Y 119 Query: 112 AGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLEL 170 P ID++ L EGLI LSG ++ ++++ N + + ++++ + ++LEL Sbjct: 120 YKPRIDKEILAANKEGLIALSGCLASEIPEAIMKDNLQKARDGIDWFKQTLGAENFYLEL 179 Query: 171 IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230 G P++ + A+ GL +VA+NDV +I+ AH+ + I L D KR Sbjct: 180 QNHGIPEQAKVNKHLIPWAKEFGLKLVASNDVHYIEKGHSHAHDCLICIGTQTQLADTKR 239 Query: 231 PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF-PTGDMSTE 289 + Q Y+RS EEM FA+IPEA+ NT+E+A++CN+ V G+ P F P + E Sbjct: 240 MKYVEEQFYLRSAEEMKARFAEIPEAVQNTLEVAEKCNLEVEFGKLHYPVFDPPEAYTRE 299 Query: 290 DYLVKRAKEGLEERLAFLFPDEEERL--------KRRPEYD------------------- 322 YL K EGL R E + +R P Y Sbjct: 300 GYLRKLLAEGLHRRYTMHVRAEGQEFIVEGIDDARRLPTYKVQSPDAKVQGNGNGHHVDE 359 Query: 323 ------------------ERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGS 364 +RL+ EL+VI + GF YFLIV +F+++ ++ G+ RGS Sbjct: 360 PITNLEDPAVKEAVKAVIDRLQMELKVIEKTGFISYFLIVGDFVRYGREQGISC-VARGS 418 Query: 365 GAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGR 424 AGSLV Y L+I ++DP+ + LLFERFLNPERV+ PD D+DF ++R VIE+V YG Sbjct: 419 AAGSLVTYLLEIANVDPIRYALLFERFLNPERVNPPDIDIDFADDRRADVIEYVRKKYGN 478 Query: 425 DAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEI 484 +V+QI+TFGTM AK+V+RDVGRV+G YG DR++K+IP + M L KA + P L Sbjct: 479 SSVAQIVTFGTMGAKSVLRDVGRVMGLGYGDCDRLAKMIPNELKMDLHKALKQSPDLKAA 538 Query: 485 YEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKS 544 Y+ +E + LID A LE +TRN+ HA GVVI + + PL DEEG VTQ+ + Sbjct: 539 YDTEEVTRELIDTAFALEDITRNSSVHAAGVVIGDQPLVNLLPLKQDEEGT-LVTQYAMN 597 Query: 545 DVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSE 604 V GL+K DFLGL+TLT+I EMI + K + P+D +PLDDKK++D+L + Sbjct: 598 PVGELGLLKMDFLGLKTLTVIRNTCEMI--KATKGVDVPID--NLPLDDKKTYDLLNNAR 653 Query: 605 TTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYP 664 T VFQLES GM+DL ++ Q E + ALVAL+RPGP+ ++ FI R+HG +I Y Sbjct: 654 TLGVFQLESGGMRDLCRKFQIGSVEHITALVALYRPGPMD--LIPEFIKRRHGEVKIEY- 710 Query: 665 DVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQR 724 +H L+ + TYGI++YQEQVMQ AQ L+GYTLGGAD+LRRAMGKKK EEM KQR Sbjct: 711 ----EHPLLEKICSETYGIMVYQEQVMQAAQYLAGYTLGGADLLRRAMGKKKVEEMQKQR 766 Query: 725 SVFAEGAEK-NGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFM 783 F +GA N I A A +IFDL+EKFAGYGFNKSH+AAYA+V+YQT +LKA+YP EF+ Sbjct: 767 ETFVKGAASINKIPAAKANQIFDLLEKFAGYGFNKSHAAAYAIVAYQTAYLKANYPVEFL 826 Query: 784 AAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIV-YGIGAIKGVG 842 +A+MT DM +T K+ + E MG+++LPPD+N F +GE++ +G+ AIKGVG Sbjct: 827 SAMMTNDMADTSKLTEFIAEARSMGIEVLPPDVNESQVAFAPARNGEVIRFGLAAIKGVG 886 Query: 843 EGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSL 902 E +++I++AR GG F L D+C R D + +NR+VLE LI SGA D R+ + + Sbjct: 887 EIAVQSILDARKAGGEFTSLGDMCQRVDIRTVNRKVLEALIKSGACDAFKETRSTMYAHI 946 Query: 903 GDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLT 962 AL A + GQ+ MF +L E E + A WPE +L E+E LG Y+T Sbjct: 947 DKALTRAAGIIQDRQRGQSSMFDMLEENREDKPEVVAKLPEWPEHELLQAEKELLGFYVT 1006 Query: 963 GHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNR-IGICTLDD 1021 GHPIN Y+ +E+Y ++ ++ E + GLV + V+K+ N+ + TL+D Sbjct: 1007 GHPINPYVPLLEKY-ALTKIAELPKLENRALTRIGGLVSVVQQGVSKKSNKPYAMVTLED 1065 Query: 1022 RSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYA 1081 G ++++ + DKY+ L + L+V G+VS + K+ +E+M +++A KY Sbjct: 1066 LDGTVQLLCMNENYDKYRHLFVVNNALLVIGEVSAGE--DKPKIFPQEIMLLEDAPRKYT 1123 Query: 1082 RGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADAR-ARLRFGATWRVSPSD 1140 + + L +D+ + L + H G P+ L +++A + + V+PS Sbjct: 1124 KQVFFRLDAAHLDENKIQSLFELATAH-PGRCPLFLRFRQATGEYVYIETHEKYSVTPSL 1182 Query: 1141 RL 1142 +L Sbjct: 1183 KL 1184 >UniRef50_A8ZSF2 DNA polymerase III, alpha subunit n=6 Tax=Deltaproteobacteria RepID=A8ZSF2_DESOH Length = 1182 Score = 804 bits (2076), Expect = 0.0, Method: Compositional matrix adjust. Identities = 460/1174 (39%), Positives = 685/1174 (58%), Gaps = 42/1174 (3%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 ++ P FVHL VH+ YS++DG+ + L+K+A GM A+AITD + G+V FY A Sbjct: 5 VTGPDFVHLHVHTAYSLLDGIIRIEALMKRAVEYGMGAVAITDHGTMFGVVSFYKEAVKA 64 Query: 61 GIKPIVGADFNV-------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 GIKP++G + V + + D L+HL +LA GY+NL L S A +G+ Sbjct: 65 GIKPVIGCECYVAPRSITDRTPMDHDGLSHLVLLAETMEGYRNLCHLASIASLKGF-YHK 123 Query: 114 PIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIR 172 P ID++ L + GLI LS G+V + LL GN+ D FY+E + +FLE+ Sbjct: 124 PRIDKELLKQYGNGLIGLSACLKGEVAQRLLEGNTEAADRAARFYQEALGENSFFLEVQN 183 Query: 173 TGRPDEESYLHAAV-ELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRP 231 G P E++ L+AA+ E+++ +P+V TND ++D D + H++ + + G T+ D R Sbjct: 184 NGIP-EQTRLNAALREMSDRLSIPLVGTNDCHYLDREDHNIHDLSLCLQTGKTIHDADRF 242 Query: 232 RNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDY 291 R + Q + + EMC P A NTV IA RCNV + P F T T D Sbjct: 243 RFETDQLNFKPKHEMCTFLEPFPNAATNTVAIADRCNVELDFKTLHFPVFATPPGKTVDQ 302 Query: 292 LVKRA-KEGLEERLAFLF---PDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347 L + +EG RL + PD + R YD RLE EL VI MGFP YFLIV +F Sbjct: 303 LFEETVREGFARRLKAVARKNPDFD-----REAYDRRLEFELSVITDMGFPSYFLIVADF 357 Query: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 I +K+NG+P+GPGRGS AGS+V+YA+ ITDLDP+E LLFERFLNPER SMPD DVD C Sbjct: 358 IAHAKENGIPIGPGRGSAAGSIVSYAMGITDLDPIEHGLLFERFLNPERKSMPDIDVDIC 417 Query: 408 MEKRDQVIEHVADMYG-RDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPD 466 + R++V ++ + YG D V+QIITFG+M ++AVIRDVGRV+G P VDRI+KLIP + Sbjct: 418 IIGRERVYHYLVEKYGGSDYVAQIITFGSMKSRAVIRDVGRVMGIPLSDVDRIAKLIPMN 477 Query: 467 PGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 +L +A EP L ++ ++ + L+ R LEG+ R+A HA GVVI +T++ Sbjct: 478 K--SLDEALAEEPDLKKLVDSRPDFAELVAAGRALEGMPRHASTHAAGVVIGDKPLTEYL 535 Query: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586 PLY +E + +TQ+D VE GLVK D LGLR LT+I L+++ ++ G D+ Sbjct: 536 PLYAVKENE-ALTQYDMKCVEAIGLVKLDLLGLRNLTVIADTLKILQQQ----GRQVPDM 590 Query: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 + + L D+K++ +L +TT VFQLES GMK+L+ +L+P F D+ ALVAL+RPGP+ SG Sbjct: 591 SHLDLADEKTYQLLCAGKTTGVFQLESTGMKELLLKLKPTTFADITALVALYRPGPMGSG 650 Query: 647 MVDNFIDRKHGREEISY--PDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704 M+ +F++ +HGR+ + Y P+ L+P+L+ TYG+I+YQEQVMQIAQ ++GYT+G Sbjct: 651 MLVDFVECRHGRKRVEYLIPE-------LEPILKETYGVIVYQEQVMQIAQAVAGYTMGT 703 Query: 705 ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764 AD LR+AMGKK +MA+ ++ F EGA GI+ A +++ ++ F YGFNKSHSAAY Sbjct: 704 ADDLRKAMGKKIAAKMAEHQATFIEGALARGIDKAKAETLYEQIKFFGEYGFNKSHSAAY 763 Query: 765 ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824 ALV++QT +LKAH+P E MAA++T+ + T VV + EC + +++LPPDIN F Sbjct: 764 ALVAFQTAYLKAHFPVELMAALLTSSTNKTIDVVKFIAECRALDIEVLPPDINESEVAFS 823 Query: 825 VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884 V D + +G+ A+K VGEG IEAI+E R G F +FDLC R K+N++VLE L+ Sbjct: 824 VVGD-RLRFGLLAVKNVGEGAIEAIVEERRANGRFVSIFDLCERVPLTKVNKKVLESLVK 882 Query: 885 SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944 GA D G RA + L DAL + + Q +F + + + W Sbjct: 883 CGALDSTGAGRAQMTAVLEDALAHGQTVQREKNDSQMSLFDMPGADAALNAPTLPDMPEW 942 Query: 945 PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004 ++ L E+E LG Y++GHP+ Y + +Y L ++ VI G+ V R Sbjct: 943 SDRQRLAFEKEVLGFYVSGHPLAAYRDVLRKYANTDALTLKEIADQSNVIIGGGITVVNR 1002 Query: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLK 1064 TKRG+++ I T++D G +EV++F D + + L +D ++ V G++ + S ++ Sbjct: 1003 -KTTKRGDQMAIVTIEDMYGTVEVVVFPDLFEVVRGFLAEDALVFVQGKLESSEVSTAIQ 1061 Query: 1065 MTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSG-TIPVHLYYQRAD 1123 A V+ +D A + + + ++ + D Q L +L + + H + +H+ Sbjct: 1062 --AERVVPLDRAEDVWLPSVHCTIDPVKTDKQTLRKLHEVFKQHAGAYSAFLHITAPPGK 1119 Query: 1124 ARARLRFGATWRVSPSDRLLNDLRGLIGSEQVEL 1157 A + T ++ L + + L+G V++ Sbjct: 1120 AGTLIALPDTMKLDSDAALFDKVNDLLGYSAVQV 1153 >UniRef50_B8D1J8 DNA polymerase III catalytic subunit, DnaE type n=1 Tax=Halothermothrix orenii H 168 RepID=B8D1J8_HALOH Length = 1122 Score = 800 bits (2067), Expect = 0.0, Method: Compositional matrix adjust. Identities = 434/1058 (41%), Positives = 655/1058 (61%), Gaps = 36/1058 (3%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL VH++YS++DG + LVKK MP +AITD L G + FY GIKPI Sbjct: 5 FVHLHVHTEYSLLDGAIRLKDLVKKTKEYDMPGVAITDHGVLYGAIDFYKLARQYGIKPI 64 Query: 66 VGADFNVQCDLLGDELT----HLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL 121 +G + + + T HL ++A N GY NLT ++S+++ G+ P +D+D L Sbjct: 65 IGCEVYLTPSSFRKKDTRERYHLLLIAQNREGYHNLTKIVSRSWLEGF-YYKPRVDKDLL 123 Query: 122 IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRTGRPDEES 180 + +GLI LS G++ + +L+ ++ + YE F + ++LEL DE+ Sbjct: 124 YQHRKGLICLSSCLQGEIPQLILKDRLQEAEQAIKEYEAIFGRESFYLELQDHNLGDEKL 183 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 +EL+ G P+V TND +++ D H++ +A+ G T++D R + Y Sbjct: 184 VNSRLIELSNKLGTPLVVTNDSHYLNREDASLHDVLLAMQTGKTINDENRLSFTGEEFYF 243 Query: 241 RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFP--TGDMSTEDYLVKRAKE 298 +S +EM LF DI + NTV+IA+ ++ +++P FP GD + + L + ++ Sbjct: 244 KSPDEMKSLFPDIEDTYLNTVKIAEMTDIDFDFNTFYIPDFPDAKGDKTPVEILRDKCQQ 303 Query: 299 GLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPV 358 GL+E+ L+ E ERL+ EL++I +MG+ YFLIV +F+ +++ G+ V Sbjct: 304 GLKEK----------GLEDNKEARERLQYELEIIEEMGYVSYFLIVWDFVNFARQKGIRV 353 Query: 359 GPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHV 418 GPGRGS AGSLV+Y L IT ++PL++ L+FERFLNPERV+MPD D+DF E+RD++IE+V Sbjct: 354 GPGRGSAAGSLVSYLLGITKINPLKYGLIFERFLNPERVTMPDIDIDFD-ERRDEIIEYV 412 Query: 419 ADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAE 478 YGR+ V+QI TFGTMAA+A IRDVGRVL P VDRI+K++P +T+ +A + Sbjct: 413 KQRYGREKVAQIGTFGTMAARAAIRDVGRVLDIPLRKVDRIAKMVPGR--VTIKEALKMN 470 Query: 479 PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538 L ++Y+ D EVK L+D A ++EG+ R+ HA GV+I P +++ PL +E + + Sbjct: 471 DNLNKLYQQDSEVKRLLDYACRVEGMPRHISTHAAGVIIGPGDLSNIIPLQTQDE--NII 528 Query: 539 TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598 TQF ++E GL+K DFLGLR LTIIN L +I+KR + +D+ IPL+D + + Sbjct: 529 TQFHMENLEELGLLKMDFLGLRNLTIINKTLNLISKRYGRE----IDVDNIPLNDDRVYK 584 Query: 599 MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658 MLQ +T VFQ+ESR +DL +RL+P+ F D+IAL+AL RPGPL S +V+ +I +HG Sbjct: 585 MLQEGKTPGVFQMESRLFQDLNRRLKPEKFSDLIALLALGRPGPLGSNLVEQYIKSRHGE 644 Query: 659 EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718 E SY H L+P+LE T+G+ILYQEQVM+IA L+GYT+G AD+LRR MGKKK E Sbjct: 645 IEPSY-----LHPELEPILEETFGLILYQEQVMEIASKLAGYTMGEADLLRRGMGKKKKE 699 Query: 719 EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778 ++K+R F EGA KNGI E+A KIFD +E FAGYGFNKSHS AYA+++YQT +LKA+Y Sbjct: 700 LISKERERFVEGAVKNGIEKEVAHKIFDQMEYFAGYGFNKSHSTAYAMLAYQTAYLKANY 759 Query: 779 PAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAI 838 P+EFMAA+++ M+N +KV + EC MGL++LPPD+N + F DG+I +G+ AI Sbjct: 760 PSEFMAALLSTVMNNLDKVGQYIRECQEMGLRVLPPDVNRSGFEFETTPDGDISFGLKAI 819 Query: 839 KGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAAL 898 K VG IEAIIE RN+ G + L D R DT ++N +V+E LI +G FD +R+ + Sbjct: 820 KNVGIKAIEAIIEERNRNGNYSSLEDFIERVDTGRVNLQVIESLIKAGVFDSFNTYRSQM 879 Query: 899 MNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQS--YASCQPWPEQVVLDGERET 956 + + + ++ A GQ F + +E+ + QS Y + P + L+ E+E Sbjct: 880 LIKYEEIYEKLGSRSRNRAQGQTSFFDLFSEDEKFYNQSIEYPEIEELPLEERLNQEKEY 939 Query: 957 LGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGI 1016 LG+YL+ HP++ + +I+ ++ +D+ E G +T G+VV + +T+ ++ Sbjct: 940 LGIYLSAHPLDPFKDKIDHFISTTS-QDIKDYE-GDKVTIGGVVVDFKEHITRTNKKMAF 997 Query: 1017 CTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQV 1054 TL+D G ++V++F D ++ LEK L+++G+V Sbjct: 998 LTLEDWLGNIKVVVFPDLYNQLDINLEKGLKLLITGRV 1035 >UniRef50_D1B9W1 DNA polymerase III, alpha subunit n=3 Tax=Synergistaceae RepID=D1B9W1_THEAS Length = 1132 Score = 799 bits (2064), Expect = 0.0, Method: Compositional matrix adjust. Identities = 473/1157 (40%), Positives = 682/1157 (58%), Gaps = 59/1157 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL VHS+YS++DG + LV A++GM A+AITD + G +FY GIKPI Sbjct: 5 FVHLHVHSEYSLLDGAIRCGELVDTVASMGMGAVAITDHGVMYGCEEFYEKCVAKGIKPI 64 Query: 66 VGADFNVQCDLLGDE-----LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 +G + V + + HL + A + GY+NL L+S A G+ P +D Sbjct: 65 IGCEVYVDPNGMDSRDGKGRNNHLVLWAEDQVGYKNLIKLVSIANTDGF-YYKPRVDHRV 123 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPD-RYFLELIRTGRPDEE 179 L + ++G+I S G++ + L+ G+ Y + F + +F+E++ P++ Sbjct: 124 LSQHSKGIIASSACLAGEIPQLLMDGDFDGAVSRANLYRDIFGEGNFFIEIMYNQLPEQA 183 Query: 180 SYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQY 239 + LA+ LP++ATND ++ D H++ + + T+D P R R S Y Sbjct: 184 MANAELIRLAKRCSLPLIATNDAHYLRREDASWHDVLLCVQTNSTVDTPDRYRFGSDDFY 243 Query: 240 MRSEEEMCELFA-DIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTED-YLVKRAK 297 +R+ EEM L ++PEAL NT+ +A+RCNV ++LG Y LP+FP + T D +L K A+ Sbjct: 244 LRTPEEMWSLLGGEVPEALRNTLLVAERCNVELQLGHYMLPEFPLPEGETLDSHLEKMAR 303 Query: 298 EGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVP 357 EGL R+ P E Y +RLE EL VI QMGFPGYF IV + I +K G+P Sbjct: 304 EGLRARVGEPIPQE---------YRDRLEYELGVIKQMGFPGYFCIVADIITAAKSRGIP 354 Query: 358 VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEH 417 +GPGRGS AGSLVA+ L IT+LDP+++ LLFERFLNPER+SMPD D D ++RD+V+ + Sbjct: 355 IGPGRGSAAGSLVAWCLGITELDPIKYKLLFERFLNPERISMPDIDTDVSDKRRDEVLAY 414 Query: 418 VADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEA 477 + + YG D VSQIITF M +KA IRDVGR L PY VDR++KL+ PD +L +A E Sbjct: 415 IVEKYGIDRVSQIITFDRMKSKAAIRDVGRALAMPYPEVDRVAKLV-PDGVKSLKEALEK 473 Query: 478 EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHP 537 P L E++ +D +V+ L+D A +EG+ R+ +HA GVVI P + + P+ E + Sbjct: 474 SPDLKEVHSSDPKVRRLVDTASHIEGIARHCSQHAAGVVITPVPLVEMVPVRKIGENQ-V 532 Query: 538 VTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSF 597 VTQ+ +E+ GLVK DFLGLRTL++I AL + R +D+ AIPLDD K+F Sbjct: 533 VTQYSMEPLEHLGLVKMDFLGLRTLSVIEGALRNVEANRGLK----IDLRAIPLDDPKTF 588 Query: 598 DMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHG 657 DMLQR++T VFQLES GM+DL++RL+PDCFED+IA++AL+RPGPL SGMVD++I+RKHG Sbjct: 589 DMLQRADTLGVFQLESSGMQDLLRRLRPDCFEDLIAVLALYRPGPLGSGMVDDYIERKHG 648 Query: 658 REEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKP 717 R ++YP H L+ L+ TYG+ILYQEQVMQ A L+GYTLG AD+LRRAMGKKK Sbjct: 649 RSPVTYP-----HPCLEEALKETYGVILYQEQVMQCAAELAGYTLGEADLLRRAMGKKKA 703 Query: 718 EEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAH 777 + M KQRS F EGA+ G+ ++A IF+ +EKFA YGFNKSHSAAYAL+SYQT +LKAH Sbjct: 704 DVMEKQRSKFVEGAKARGVEPKMAEDIFNSIEKFAEYGFNKSHSAAYALISYQTAYLKAH 763 Query: 778 YPAEFMAAVMTADMDNTEKVVG-LVDECWRMGLKILPPDINSGLYHFHVNDDGEIV-YGI 835 Y EF+A+ +++ + + ++G + E +G +LPPDIN F GE++ G+ Sbjct: 764 YGPEFLASYLSSIVGSRMDILGRYIKEVRNLGYSVLPPDINESQSDFVAV--GEVIRLGL 821 Query: 836 GAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHR 895 A+ VG+ ++AI+ AR++G FR +D R D + +NR V+E LI +GAFD L P+R Sbjct: 822 SAVAKVGDSAVDAILRARSEGP-FRSFWDFLCRVDLRTVNRGVIENLIKAGAFDVLCPNR 880 Query: 896 AALMNSLGDALKAADQH---AKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952 L+++L L+ A + +K ++ D + + ++ + L+ Sbjct: 881 RMLLDNLEGLLEMAQRRCDPSKQVSLFDGDEEEEEEPKMDVVDDVDIHQR-------LEW 933 Query: 953 ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVI-TAAGLVVAARVMVTKRG 1011 ERE LGLY++GHP Q E+ ++ ++ D+ V AGL+ R TKRG Sbjct: 934 EREVLGLYISGHPFEQVEGELAPFL-VCKISDLRSWRSSNVAPVTAGLLAGIRERYTKRG 992 Query: 1012 NRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVM 1071 + +GI ++D ++E + F K + +L I + SG V D G L + E+M Sbjct: 993 DPMGILEMEDGDDKVEAVCFPKVWQKVKPMLRTGGIYVFSGMVKDD---GRLSVLIDEIM 1049 Query: 1072 DIDE-AREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRF 1130 + E REK L+ R L L + L+ H SG P+ +Y + Sbjct: 1050 EAREWIREKVPVAKLRVLSKRA---GLFRDLARELKGH-SGPSPLLIYVEEGGI-----I 1100 Query: 1131 GATWRVSPSDRLLNDLR 1147 A W S R+ + LR Sbjct: 1101 TALWSRSIKVRVDDSLR 1117 >UniRef50_D1Y4Y5 DNA polymerase III, alpha subunit n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y4Y5_9BACT Length = 1155 Score = 798 bits (2060), Expect = 0.0, Method: Compositional matrix adjust. Identities = 443/1047 (42%), Positives = 647/1047 (61%), Gaps = 46/1047 (4%) Query: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61 +E FVHL VH++YS++DG + A L K+ A GMPA+A+TD + G V+FY AG Sbjct: 3 AEKNFVHLHVHTEYSLLDGAIRCADLAKRCAEWGMPAVAMTDHGVMYGAVEFYQQCKSAG 62 Query: 62 IKPIVGADFNVQCDLLGDE---LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDR 118 +KPI+G + V D + ++ HL +LA N+ GY NL L+S A RG+ P +D Sbjct: 63 VKPIIGCEMYVSPDGIDNKEKKYNHLLLLAENDEGYHNLIKLVSIANTRGF-YYKPRVDH 121 Query: 119 DWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRTGRPD 177 L + ++GLI S G++ R LL G+ E Y + F + +FLE++ P+ Sbjct: 122 QLLAQYSKGLICSSACLAGEIPRFLLEGDEKGALERAQMYRDIFGAESFFLEIMPNQLPE 181 Query: 178 EESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQ 237 + + +E+A P++ATND +++SSD+D HE+ + + + DP R Sbjct: 182 QVAVNKMIIEMARKNNFPLLATNDAHYLNSSDYDWHELLLCVGTKKVITDPGRMSFRVND 241 Query: 238 QYMRSEEEMCELF-ADIPEALANTVEIAKRCNVTVRL--GEYFLPQF--PTGDMSTEDYL 292 Y RS +EM F ++ P++L NT+ IA+RC+ L G+Y LP+F P G M+ + YL Sbjct: 242 FYFRSAQEMWGYFGSEAPDSLENTLRIAERCHFDFALNTGDYLLPKFEIPEG-MTLDTYL 300 Query: 293 VKRAKEGLEERLAF-LFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWS 351 K A+ GL+ERL + PDE Y+ RL EL +I QM FPGYFLI+ + I Sbjct: 301 EKMARSGLKERLGVEVIPDE---------YENRLSYELGIIKQMKFPGYFLIIADVIGAC 351 Query: 352 KDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKR 411 K +G+P+GPGRGS AGSLVAY++KIT+LDP+ F L+FERFLNPERVSMPD D D + R Sbjct: 352 KSHGIPIGPGRGSAAGSLVAYSMKITELDPIRFGLIFERFLNPERVSMPDIDTDVSDKGR 411 Query: 412 DQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL 471 D++I++V D YG + VSQIITFG M +K I+DVGR +G PY V++++ L+ PD ++ Sbjct: 412 DRLIKYVVDKYGVENVSQIITFGRMKSKQAIKDVGRAMGMPYADVNKVANLV-PDGAKSI 470 Query: 472 AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCD 531 +A E P L ++ ++D ++ L+ A +EG+ R+ +HA GVVI P +TD P+ Sbjct: 471 KEAVEQTPDLQDLEKSDSQISKLLTSASSMEGLARHCSQHAAGVVITPKPLTDLVPVRQI 530 Query: 532 EEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPL 591 EEG+ TQF V GLVK DFLGL+TL+I+ A+ + +NG D+ +PL Sbjct: 531 EEGQ-VATQFSMDPVASLGLVKMDFLGLQTLSILEEAVANVK----RNGTTLGDLNRLPL 585 Query: 592 DDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNF 651 DD + + +LQ ++T +FQLES GM+ LIK++QPD F D++A++AL+RPGPL+SGMVD + Sbjct: 586 DDPEVYRLLQNADTLGIFQLESSGMRRLIKKMQPDRFADLVAILALYRPGPLESGMVDQY 645 Query: 652 IDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRA 711 ++ KHG E V + H L+PVL TYG++LYQEQVM+ A L+GYTLGGAD+LRRA Sbjct: 646 VNCKHGEE------VHYLHPLLEPVLNETYGVVLYQEQVMKCASTLAGYTLGGADLLRRA 699 Query: 712 MGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQT 771 MGKKK M + RS+F GA KNGI+AE +IFD++EKFAGYGFNKSHSAAYALV+YQT Sbjct: 700 MGKKKKSVMDEHRSIFINGAAKNGIDAEKGAEIFDIIEKFAGYGFNKSHSAAYALVTYQT 759 Query: 772 LWLKAHYPAEFMAAVMTADMDNTEKVVG-LVDECWRMGLKILPPDINSGLYHFHVNDDGE 830 WLK HYP EFMAA +++ + ++V+ V E G+ +L PDIN F + E Sbjct: 760 AWLKVHYPKEFMAAYLSSKIGAKKEVMAEYVREVRASGIDVLAPDINQSYADFTATKN-E 818 Query: 831 IVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDR 890 I +G+G + VGE + +I +AR +GG F+ +D R D + + V+E LI +GAFD Sbjct: 819 IRFGLGGVTKVGEAALNSIFKAREEGGPFKGFWDFIVRVDKHSVGKAVIESLIKAGAFDS 878 Query: 891 LGPHRAALMNSLGDALKAADQHAKAEAIG-QADMFGVLAEEPEQIEQSYASCQPWPEQVV 949 L +R L+ SL + + A ++ ++ G Q +FG + E +Q E + E+ Sbjct: 879 LNSNRKQLLTSLDNLFEVA---SRRDSQGDQGSLFGDMTSE-DQPELAEVDDLNITEK-- 932 Query: 950 LDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITA--AGLVVAARVMV 1007 L+ E+E LG+Y++GHP + + + + R+ D+ P + T AGL+ + + Sbjct: 933 LEMEKEALGMYISGHPFDGF-RRLAAQKANARIADL-PYWKSDTTTPTFAGLLSGWQEKM 990 Query: 1008 TKRGNRIGICTLDDRSGRLEVMLFTDA 1034 TKRG+ +GI ++DD ++V+ F A Sbjct: 991 TKRGDAMGIFSIDDGEDEIKVICFPKA 1017 >UniRef50_Q67RP9 DNA polymerase III alpha subunit n=4 Tax=Clostridia RepID=Q67RP9_SYMTH Length = 1252 Score = 796 bits (2057), Expect = 0.0, Method: Compositional matrix adjust. Identities = 445/1086 (40%), Positives = 653/1086 (60%), Gaps = 51/1086 (4%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M P FVHL +H++YS++DG + PL ++AA LGM A+A+TD L G++ FY A Sbjct: 26 MGRPEFVHLHLHTEYSLLDGANRIEPLARRAAELGMRAMAMTDHGVLFGVLPFYKAMRNH 85 Query: 61 GIKPIVGADFNV-----QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPI 115 G+KPI+G + V G++ HLTVLA N TGY+NL L+S Y G+ P Sbjct: 86 GVKPIIGCELYVAPGSRHVKSGGEKPYHLTVLAENYTGYKNLVKLVSAGYTEGF-YYKPR 144 Query: 116 IDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRTG 174 +D + L EGLI+LSG G+V + L G + Y E F PD YFLEL G Sbjct: 145 VDLELLNTYREGLIVLSGCLAGEVAQKFLAGQPEEARRAIGRYREIFGPDHYFLELQDLG 204 Query: 175 RPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNY 234 P+++ +E +GLPVVATND ++ D ++ + I T+DDP R R Sbjct: 205 LPEQQGLNRFLLE----QGLPVVATNDAHYLRPQDARTQDVLICIGTNKTIDDPNRMRMG 260 Query: 235 SPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF--PTGDMSTEDYL 292 + + Y++S EEM F +P AL N++ IA+RCNV + LG+ LP + P G YL Sbjct: 261 TSELYVKSAEEMYWRFGHVPGALENSLAIAERCNVELPLGQIHLPHYALPPG-YDAPGYL 319 Query: 293 VKRAKEGLEERLAFLFPDEEERLKRRPEYD-ERLETELQVINQMGFPGYFLIVMEFIQWS 351 K E + R R PE ERLE EL VI MGF GYFLIV +F++++ Sbjct: 320 RKLCYERIGPRYG----------GRPPEGAMERLEHELNVIISMGFAGYFLIVWDFVEFA 369 Query: 352 KDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKR 411 + G+PVGPGRGSGA SLVAY L ITD+DPL + LLFERFLNPERV MPDFD+DFC E+R Sbjct: 370 RSRGIPVGPGRGSGASSLVAYVLGITDVDPLRYGLLFERFLNPERVDMPDFDIDFCYERR 429 Query: 412 DQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL 471 +VIE+V + YG + V+Q+ITF TMAA+A +RDVGR LG YG VDR++KL+P G +L Sbjct: 430 GEVIEYVHNKYGAECVAQVITFNTMAARAAVRDVGRALGMSYGEVDRVAKLLP--WGQSL 487 Query: 472 AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCD 531 A E +L +YE EE++ LID AR +EG+ RN HA GVVI + + PLY Sbjct: 488 DAALEKTEELRTLYEEREEIRTLIDTARAVEGMPRNPSVHAAGVVITADPLVEHVPLYKM 547 Query: 532 EEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPL 591 + VTQFD ++ GL+K DFLGLRTLT+I+ A++ + + +P DI IP+ Sbjct: 548 GDDSI-VTQFDMDQLKEIGLLKMDFLGLRTLTVIDHAVKFV-----RQYQPDFDIERIPM 601 Query: 592 DDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNF 651 DD +++ M+ R ET +FQ+E+ + D++++++P FED+IA ++L RPGP++ + ++ Sbjct: 602 DDPETYAMIARGETLGLFQIEAGWVADVLRQMKPTRFEDIIATISLCRPGPMEH--IPDY 659 Query: 652 IDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRA 711 I K + V++ H L+P+L TYG+++YQEQ++QIA +L+G +LG AD+LRRA Sbjct: 660 IAGKQ-----NPAGVKYLHPDLEPILSETYGVMVYQEQIIQIAHLLAGLSLGQADLLRRA 714 Query: 712 MGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQT 771 + KKK E+M K +F E E+ G + E+A ++D + +FA YGFNK H+ YA V+YQT Sbjct: 715 IAKKKREDMEKYGRLFMEALEQRGYSHEVATALYDQMIRFANYGFNKCHATPYAKVAYQT 774 Query: 772 LWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEI 831 +LK H+P FMAA+M + M K+ ++EC R+G+++LPPD+N+ F V D I Sbjct: 775 AYLKRHHPVAFMAALMNSVMGQEAKLALYIEECRRLGIQVLPPDVNTSFARF-VPDGRTI 833 Query: 832 VYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRL 891 +G+GA+K +G ++AI+ AR +GG F L DLC R D + LNRR LE LIM+GAFDR+ Sbjct: 834 RFGLGAVKNIGWNAVDAIVAAREEGGPFTSLRDLCERVDLRPLNRRALESLIMAGAFDRV 893 Query: 892 GP------HRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQI-EQSYASCQPW 944 P R+ ++ +L L A + + GQ +F + P E+ + Sbjct: 894 APPGGRPARRSQMLEALDKILDDAQKLQRHRQAGQISLFDLGVAGPGTAGEEPLPDIPEF 953 Query: 945 PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004 P Q +L E+E LG Y++GHP+ QY + + G + + + G + G+V + Sbjct: 954 PPQRLLAMEKEVLGFYVSGHPLRQYQAALAAH-GCLPVAALPEQRDGARVAVGGMVAGLK 1012 Query: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLK 1064 + T+ G + TL+D++G++EV++F L ++L +++ L+V G++ + +K Sbjct: 1013 QVTTRSGANMAFLTLEDQTGQVEVVVFPRVLQACARVLREEQPLLVRGRLQVQEDE--VK 1070 Query: 1065 MTAREV 1070 + A EV Sbjct: 1071 LLADEV 1076 >UniRef50_Q160T2 DNA polymerase III, alpha subunit n=39 Tax=Rhodobacterales RepID=Q160T2_ROSDO Length = 1183 Score = 795 bits (2053), Expect = 0.0, Method: Compositional matrix adjust. Identities = 478/1119 (42%), Positives = 668/1119 (59%), Gaps = 66/1119 (5%) Query: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61 + PRF+HLR HS+YS+++G + L GMPALA+TD N+ ++F A GAG Sbjct: 3 THPRFIHLRTHSEYSLLEGALRLKKLPSMCRDAGMPALALTDKNNMFAALEFSVAMSGAG 62 Query: 62 IKPIVGADFNV-----QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPII 116 ++PI+G +V Q + +LA + GY+NL L S Y G A P + Sbjct: 63 VQPILGCQVDVAYVTAQPGERERAPAPVVLLAQSEAGYENLMRLNSCLYI-DKGGALPQV 121 Query: 117 DRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR---- 172 L G+I L+GG G VG+ L G + + F DR ++EL R Sbjct: 122 TLSELESNAGGIICLTGGPDGPVGQLLQLGQMPAAQALMDRLKAAFQDRLYIELQRHPGE 181 Query: 173 TGRPDEESYLHAA-VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRP 231 +G+P++E VE+A A LP+VATNDV F +S ++AH+ + I +G +D Sbjct: 182 SGQPEKERLTERGFVEMAYAMDLPLVATNDVYFPNSDMYEAHDALICIAEGAYVDQQDDR 241 Query: 232 RNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDY 291 R + Q Y +S+ EM LFAD+PEA+ NTVEIAKRC + LP+F D E+ Sbjct: 242 RRLTNQHYFKSQSEMVALFADLPEAIENTVEIAKRCAFQAYRRDPILPKF--ADDEVEE- 298 Query: 292 LVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWS 351 L K+A GL+ RL + +Y +RL+ EL +I MGFPGYFLIV +FI+W+ Sbjct: 299 LRKQAHAGLKARLEVI-----PHAASVEDYTKRLDFELGIIEGMGFPGYFLIVADFIKWA 353 Query: 352 KDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKR 411 K+ G+PVGPGRGSGAGSLVAYAL +TDLDPL ++LLFERFLNPERVSMPDFD+DFCM++R Sbjct: 354 KEQGIPVGPGRGSGAGSLVAYALTVTDLDPLRYNLLFERFLNPERVSMPDFDIDFCMDRR 413 Query: 412 DQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPD--PGM 469 ++VI +V + YGRD V QIITFG + +KA +RD+GRVL PYG VDR+SK+IP + + Sbjct: 414 EEVIRYVQEKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSKMIPVEGVKPV 473 Query: 470 TLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLY 529 ++ KA EP+L E + +E V L++ +++EG+ RNA HA GVVI + PLY Sbjct: 474 SIEKALADEPRLREEAKNEEVVARLLNYGQQVEGLLRNASTHAAGVVIGDRPLDALVPLY 533 Query: 530 CDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRR-----AKNG---- 580 D + P TQF+ VE AGLVKFDFLGL+TLT+I A+E I A +G Sbjct: 534 QDPRSEMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVEQIMASGRPLHIAADGTELY 593 Query: 581 EPPL----DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVA 636 EP DI AIPLDD++S+ + ++T AVFQ+ES GM D +KR++P C ED++ALVA Sbjct: 594 EPAPGTENDINAIPLDDERSYKLYASAKTVAVFQVESSGMMDALKRMKPTCIEDIVALVA 653 Query: 637 LFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQV 696 L+RPGP+++ + + + K+G E+ Q H + +LE T GII+YQEQVMQIAQV Sbjct: 654 LYRPGPMEN--IPTYCEVKNGLREL-----QSIHPLIDDILEETQGIIVYQEQVMQIAQV 706 Query: 697 LSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGF 756 ++GY+LGGAD+LRRAMGKK EEMAK+R F +GA NG++ + A ++FDL+EKFA YGF Sbjct: 707 MAGYSLGGADLLRRAMGKKIAEEMAKERPKFEKGAVANGVDKDKAREVFDLLEKFANYGF 766 Query: 757 NKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECW-RMGLKILPPD 815 NKSH+AAYA+VSYQT WLKA++P EFMA VM D+ T+K+ +E R+ L +PP Sbjct: 767 NKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAIYFEEVRKRLELPWVPPC 826 Query: 816 INSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEAR--------NKGGYFRELFDLCA 867 +N F V DG +VY +GA+K VG ++ I + R + F LFDL Sbjct: 827 VNRSDATFKVA-DGALVYALGALKNVGVEAMKLITDGRRADPGDEGSPDKPFATLFDLAR 885 Query: 868 RTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVL 927 R D K++ +R LE L SGAFD L +R + +L + + + +A Q +FG Sbjct: 886 RVDLKRVGKRPLEMLARSGAFDALDANRRRVFGALDALVNYSAAIHEQKASNQVSLFGEA 945 Query: 928 AEE-PEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVR----- 981 ++ PE QP L E + +G YL+GHP++ Y+ +++R G R Sbjct: 946 GDDLPEPRLHPVDDWQPAER---LSEEFKAVGFYLSGHPLDDYMGQLKRKWGNDRGVPFM 1002 Query: 982 -LKDMHP--TERGKV-ITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDK 1037 L ++ TERG + AG+V + + RGNR + D +G EV LF+D L+ Sbjct: 1003 TLDELTEKVTERGAMNARLAGIVAGRQERKSARGNRFAFAQMSDPTGAYEVTLFSDTLEA 1062 Query: 1038 YQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEA 1076 + LE ++V+ + + + S LK+ R V ID A Sbjct: 1063 ARDYLEAGSKVVVTVEATME--SDQLKLLGRSVGPIDAA 1099 >UniRef50_C6XJW1 DNA polymerase III, alpha subunit n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XJW1_HIRBI Length = 1145 Score = 795 bits (2053), Expect = 0.0, Method: Compositional matrix adjust. Identities = 448/1053 (42%), Positives = 643/1053 (61%), Gaps = 41/1053 (3%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 + +PRFVHLRV S S++ + L K G PA+AITD N+ G ++ Sbjct: 10 LDKPRFVHLRVRSALSLLGSMITIKKLCKWTFENGFPAVAITDDNNMFGALELSETLAPM 69 Query: 61 GIKPIVGADFNVQCDL-LGDELTHLTVLAANNTGYQNLTLLISKAY-QRGYGAAGPIIDR 118 G++PI+ ++ + E T L + A N GY+N+ +L +K + + G G +D Sbjct: 70 GVQPIIAITLHIYDRINPAAEPTELALFAQNEAGYKNMMILTTKGFLESPSGGTGVYLDD 129 Query: 119 DWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDE 178 ++E +EGLI +GG G+V + G+ E + E FP+R ++EL R GR E Sbjct: 130 --VLEHSEGLICTTGGGNGEVTQLCAAGDEEGAREYLLKLNEAFPNRLYVELQRHGRLTE 187 Query: 179 ESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQ 238 + V+LA LP+VATN+ RFI + AH+ + I + RP+ SP+Q Sbjct: 188 DKAEELLVDLAYELDLPLVATNEARFIKRAQHKAHDALLCIAGSTYVSVQDRPKA-SPEQ 246 Query: 239 YMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKE 298 YM++EEEM LF+D+PEA+ NT EIA+RC+ + LP F D + L ++A+E Sbjct: 247 YMKTEEEMINLFSDLPEAIENTCEIARRCSYRPAWRKPILPNFTGDDGDEGEELDRQARE 306 Query: 299 GLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPV 358 GL+ RL+ EEE++ Y +RL+ EL +I QMGFPGYFLIV +FI+W+K++ +PV Sbjct: 307 GLKMRLSSGILYEEEQV-----YWDRLDFELNIIRQMGFPGYFLIVSDFIKWAKEHDIPV 361 Query: 359 GPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHV 418 GPGRGSGAGSLVA+ L ITDLDPL F LLFERFLNPERVSMPDFDVDFC ++R +VIE+ Sbjct: 362 GPGRGSGAGSLVAWVLTITDLDPLRFGLLFERFLNPERVSMPDFDVDFCQDRRHEVIEYT 421 Query: 419 ADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGM--TLAKAFE 476 YG D V+ IIT+GT+ AKAVIRDVGRV P+G VD++SKLIP +P TL +A + Sbjct: 422 KRKYGADRVAMIITYGTLQAKAVIRDVGRVHQLPFGQVDKLSKLIPFNPANPPTLQEAID 481 Query: 477 AEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKH 536 EP+ + +E+V+ L++ A +LEG+ RNAG HA GVVI + + +PLY D + Sbjct: 482 GEPKFKQEMRENEDVRNLVETALELEGLYRNAGTHAAGVVIGDRPLVELSPLYKDPKSDI 541 Query: 537 PVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKS 596 P TQF+ E+ GLVKFDFLGL+TLT+I AL+ + + E DD+++ Sbjct: 542 PATQFNMKWAEHNGLVKFDFLGLKTLTVIQRALKFVISEGKQLTE-----KWHTFDDEEA 596 Query: 597 FDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKH 656 + +L ET VFQLES GM+D +++++PDC ED+IAL++L+RPGP+++ +D ++ RK Sbjct: 597 YKLLSSGETLGVFQLESTGMRDTLRKVKPDCIEDIIALISLYRPGPMKN--IDTYVARKE 654 Query: 657 GREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKK 716 GREEI Y H+ LKPVLE TYG+I+YQEQVM+IAQ+L+GY+LG AD+LRRAMGKKK Sbjct: 655 GREEIDY-----LHDDLKPVLEETYGVIVYQEQVMRIAQILAGYSLGEADLLRRAMGKKK 709 Query: 717 PEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKA 776 PEEM KQ+ F EGA K ++ E A IF+LV +FAGYGFNKSH+AAYA+++YQT +LKA Sbjct: 710 PEEMLKQKVRFLEGAAKKDVSKERAEFIFELVNEFAGYGFNKSHAAAYAVIAYQTAYLKA 769 Query: 777 HYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIG 836 +P EF+A M+ D+ NTEK+ E R+ + ++ PDI F V D +I Y +G Sbjct: 770 KHPVEFLAGSMSLDLTNTEKLAAFFQETKRLKIPVVTPDITLCNADFDVRDQ-KIYYALG 828 Query: 837 AIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRA 896 A+KGVG+ + + ARN+ F +LFD R D +++N+RV + L G FD+L +RA Sbjct: 829 AVKGVGKEAMLDVERARNEKP-FEDLFDFAERVDPRQINKRVYQALSKCGGFDQLEKNRA 887 Query: 897 ALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERET 956 + ++ + Q +FG +EP + PW + +LD E + Sbjct: 888 KAFEASEMLAAMSNAANRDRNSNQNSLFG---DEP-PMRPKLPKAAPWSSEKILDYELSS 943 Query: 957 LGLYLTGHPINQYLK--EIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKR---- 1010 +G YL+GHP++ L+ ER V ++ ++ G+ A ++ +V V K Sbjct: 944 VGFYLSGHPLDDILEGPARERIVLSSQMMEL-----GRERAALEMIGVVKVRVEKPSMSG 998 Query: 1011 GNRIGICTLDDRSGRLEVMLFTDALDKYQQLLE 1043 G + TL D SG E+ + + L + + E Sbjct: 999 GGKFAYITLSDPSGEYELFVAPETLAETRDYFE 1031 >UniRef50_O51526 DNA polymerase III subunit alpha n=25 Tax=Borrelia RepID=DPO3A_BORBU Length = 1147 Score = 792 bits (2046), Expect = 0.0, Method: Compositional matrix adjust. Identities = 456/1169 (39%), Positives = 697/1169 (59%), Gaps = 48/1169 (4%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 RF+HL VHSDYS++DG AK + ++ KA M +A+TD NL G +KFY AGIKP Sbjct: 6 RFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKKAGIKP 65 Query: 65 IVG--------ADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPII 116 I+G + F + D LG HL +LA N GY+NL L S +Y G+ P I Sbjct: 66 IIGIEAYMAKTSKFLKKQDDLGKMSYHLILLAKNELGYKNLLKLTSISYLEGF-YYRPRI 124 Query: 117 DRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRP 176 D+D L + +EGLI S G + R +L + ++++ F + ++LEL R G Sbjct: 125 DKDDLEKYSEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYLELQRHGIK 184 Query: 177 DEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSP 236 D++ V+ + G+P+ A ND +++ D A +I V I G D R + + Sbjct: 185 DQDIVNERLVKYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSDENRLKMETN 244 Query: 237 QQYMRSEEEMCELFADIPEALANTVEIAKRCN-VTVRLGEYFLP--QFPTGDMSTEDYLV 293 + Y++S+EEMCELF D+PEAL NTV IA++C+ + LP Q P + +YL Sbjct: 245 EFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVEFNTLGEYLE 304 Query: 294 KRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKD 353 EGL+ F + + ++K R Y EL VI MGF GYFLIV +FI+++ D Sbjct: 305 HLTLEGLK----FRYKNLTSKIKDRAFY------ELSVIIGMGFEGYFLIVWDFIKFAHD 354 Query: 354 NGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQ 413 N +PVG GRGSGAGS+VAYAL+ITD+DPL+++LLFERFLNPER+SMPDFD+DFC E RD+ Sbjct: 355 NDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDIDFCFEGRDE 414 Query: 414 VIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAK 473 +I++V + YG D V+QIITFGT+ KAV++DV RVL P+ + ++K IP P ++L + Sbjct: 415 IIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIPDGPKVSLKE 474 Query: 474 AFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEE 533 + + L E + + K L++ A LEG+ R+A HA G+VI+ T +TD+ PLY D + Sbjct: 475 VLD-DNSLKECFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLTDYVPLYKDYK 533 Query: 534 GKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDD 593 TQ+ +E GLVK DFLGL+TLT+I A +I R+ N P I IP +D Sbjct: 534 QGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLI---RSVN--PDFKIKNIPDND 588 Query: 594 KKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFID 653 K+F+ML + +VFQ ES GM+ ++K +PD ED+IAL AL+RPGP+Q + FI Sbjct: 589 VKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQ--FIPQFIA 646 Query: 654 RKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMG 713 K G + I YP H LK VL PTYG+I+YQEQVM++A+++ G++LG AD+LRRAMG Sbjct: 647 AKKGVKRIKYP-----HPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMG 701 Query: 714 KKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLW 773 KKK +EM + + F GA + G + E+A +IF+L++ F+GYGFNKSH+AAY+L++YQT + Sbjct: 702 KKKEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAY 761 Query: 774 LKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVY 833 LKA+YP FMAA +T +++N +K+ ++E +G+ +L PDIN F V D G I Y Sbjct: 762 LKANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSG-ISY 820 Query: 834 GIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGP 893 G+ IK +G ++ II+ R K G + D R D K +N++ LE I SG FD L Sbjct: 821 GLNGIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQ 880 Query: 894 HRAALMNSLGDALKAADQHAKAEAIGQADMFGVL-AEEPEQIEQSYASCQPWPEQVVLDG 952 +R L +L ++ + + +GQ +FG L +++P Q +Y + + + +L Sbjct: 881 NRKTLFENLDHLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLGF 940 Query: 953 ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012 E+E LG Y++GHP++ Y K I+ + L D+ ++ ++ +G++ + +V+ TKR N Sbjct: 941 EKELLGFYVSGHPLDPYKKAIDSFSSLNVLTDL-AAKKDSIVQFSGILNSVKVIQTKRNN 999 Query: 1013 -RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSF--DDFSGGLKMTARE 1069 ++ ++D G +++++FT++ ++Y+ L + ++ V G+++F D FS + + Sbjct: 1000 AKMAFGVIEDFKGAIDIVVFTESYERYRNFLLEGNVIGVVGRLTFNRDKFS----IVVEK 1055 Query: 1070 VMDIDEAREKYARGLAISLTDRQIDD-QLLNRLRQSLEPH--RSGTIPVHLYYQRADARA 1126 V++I+ E + I + +++D QLLN L++S+ SG V+ Y + Sbjct: 1056 VVNIERLSEYKINNIHIKFLNNKLNDLQLLNSLKESISNFEDNSGFSNVYFYLRENGKDL 1115 Query: 1127 RLRFGATWRVSPSDRLLNDLRGLIGSEQV 1155 +L+ + P + L+ LR + E V Sbjct: 1116 KLKMNSILNFVPDEDKLDKLRKCVIVEDV 1144 >UniRef50_C5EYF1 DNA polymerase III alpha subunit n=3 Tax=Helicobacter RepID=C5EYF1_9HELI Length = 1172 Score = 791 bits (2044), Expect = 0.0, Method: Compositional matrix adjust. Identities = 448/1107 (40%), Positives = 665/1107 (60%), Gaps = 61/1107 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F HL +H++YS++DGL K L K+ LGM ++AITD N+ G ++FY A GIKPI Sbjct: 16 FTHLHLHTEYSLLDGLNKIKILAKRIKELGMDSVAITDHGNMFGAIEFYKAMKEQGIKPI 75 Query: 66 VGADFNVQ-CDLLGDELT---HLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL 121 +G + + + + D+ HL + A N GY+NL L S+A GY P I + L Sbjct: 76 LGMEAYLHNAEEISDKSNQRFHLCLYAKNLQGYKNLMYLSSQACLYGY-YMKPRISKKML 134 Query: 122 IELNEGLILLSGGRMGDVGRSLL--------RGNSALVDECVAFYEEHFPDRYFLELIRT 173 E +EGLI S G+V L R E Y+E F D ++LEL+R Sbjct: 135 REHSEGLICSSACLNGEVQWHLNLKKEDNKGRKGYERAKEVALEYKEIFGDDFYLELMRH 194 Query: 174 GRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRN 233 G +++ ++++ G+ ++ATND + + D A E+ I G +DP R R+ Sbjct: 195 GIEEQQLIDKQIIQISLETGIKIIATNDTHYTNQGDSTAQEVAFCIGFGKDFNDPNRMRH 254 Query: 234 YSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFP-TGDMS----- 287 + Y++S E+M +L+ D+PEA+ANT EIA +CN+ + LG+ P F T + + Sbjct: 255 TVQEFYIKSPEQMAKLYMDLPEAIANTKEIADKCNLELHLGDPTPPSFKFTAEYAKAENL 314 Query: 288 --TED--YLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLI 343 T+D Y + +EGL++RL E R EY ERLE E+++IN+M FPGY LI Sbjct: 315 DFTQDSEYFAYKCREGLKKRL------ENVESSRHQEYKERLEKEIEIINKMKFPGYMLI 368 Query: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 V +F++ +K+ G+PVGPGRGS AGSLVA+ L+IT++DP+++DLLFERFLNPERVSMPD D Sbjct: 369 VWDFVRAAKERGIPVGPGRGSAAGSLVAFCLEITNIDPMKYDLLFERFLNPERVSMPDID 428 Query: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 +DFC +R++++E+V D YGR V+Q+ITFG M AKAVIRDV RV+G PYG D +KLI Sbjct: 429 MDFCQSRREEILEYVTDKYGRHNVAQVITFGMMKAKAVIRDVARVMGMPYGEADAFAKLI 488 Query: 464 PPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVI-APTKI 522 P + +TL KAFE EP++ E+ + D K + D A LE RN G HA VVI + ++ Sbjct: 489 PKELDITLEKAFEKEPKIKELIDKDPLAKKIWDFAVVLENTKRNPGTHAAAVVIDSEHEL 548 Query: 523 TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP 582 APLY TQ+ +E L+KFDFLGL+TLT+++ AL++I R N E Sbjct: 549 WHKAPLYRSTRDGIIATQYSMKYLEDVDLIKFDFLGLKTLTLVDDALKLIKNRH--NLE- 605 Query: 583 PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 +D + ++DKK ++ LQ T +FQ+ES + + KRL+P FED+IA++AL RPGP Sbjct: 606 -IDFLKLDVNDKKVYETLQSGNTLGIFQIESSMFQGINKRLRPSTFEDIIAIIALGRPGP 664 Query: 643 LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 ++SGMV +FIDRKHG+ I Y L+ +L PTYG I+YQEQVMQI Q + G++L Sbjct: 665 MESGMVSDFIDRKHGKAPIVY-----MFPELESILRPTYGTIVYQEQVMQIVQKIGGFSL 719 Query: 703 GGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSA 762 G AD++RRAMGKK + MA ++ FA+GAEK G N A ++++L+ KFAGYGFNKSHSA Sbjct: 720 GEADLIRRAMGKKDAQIMADNKNKFAQGAEKQGFNRAKAEELWELIVKFAGYGFNKSHSA 779 Query: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 AYA+++++T +LK +YP EFMAA++T++ ++T+K+V ++E +M +K+LPP+I Sbjct: 780 AYAMITFETAYLKTYYPKEFMAALLTSEKNSTDKIVEYIEEANKMDIKVLPPNIQKSELE 839 Query: 823 FHV---NDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVL 879 F V +D+ I++G+GAIKG GE I I+E R G F++L D +R D +K+N++ L Sbjct: 840 FSVARIDDEDCILFGLGAIKGAGEVAINIILEERKNNGDFKDLEDFLSRIDPQKVNKKSL 899 Query: 880 EKLIMSGAFDRLGPHRAALMNS---LGDALKAADQHAKAEA----IGQADMFGVLAEEPE 932 E I SGA D G R L+ L + K A Q AK EA G ++ F +A E E Sbjct: 900 EAFIKSGAMDCFGYTRRTLLEQVELLTENAKTA-QIAKKEAENSLFGDSEEFTAIALELE 958 Query: 933 QIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGK 992 E+ + ++ +L+ E+E+LG Y +GHP+ Y KEI + + + Sbjct: 959 NKEE-------YSKKEILEFEKESLGFYASGHPLEDY-KEIIKSINCAYTNQIQDIAENS 1010 Query: 993 VITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSG 1052 I G + +K G R GI L D G +E+ +F L + + DR + ++ Sbjct: 1011 SILLVGSIEDVITKFSKSGKRYGILKLQDFYGSVELTIFEKTLLALEGM---DREIPIAV 1067 Query: 1053 QVSFDDFSGGLKMTAREVMDIDEAREK 1079 + + + + A +++ ++EA+++ Sbjct: 1068 KCFVQEQNDTKSLRAEKILTLEEAQKE 1094 >UniRef50_C8WER6 DNA polymerase III, alpha subunit n=10 Tax=Alphaproteobacteria RepID=C8WER6_ZYMMN Length = 1174 Score = 791 bits (2042), Expect = 0.0, Method: Compositional matrix adjust. Identities = 457/1075 (42%), Positives = 640/1075 (59%), Gaps = 57/1075 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FV LR+ S ++M++G + + + A +G PA I D L G++ F +G G++PI Sbjct: 6 FVPLRIFSGFTMLEGAIEPKDITQHAKKMGFPAAGICDRNGLYGVMTFSDSGKKDGVQPI 65 Query: 66 VGADFNVQCDLLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDR 118 +G+ V L G E + L + A + GY NL L+S A+ P + Sbjct: 66 IGSLLAVARPLRGGEASGQELKIDWLPLYAQDEDGYNNLCALVSHAHLGRPLELPPHVSM 125 Query: 119 DWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDE 178 ++L + ++GL+ L+GG+ G + R L + + + ++ FPDR ++EL R E Sbjct: 126 EFLEQHSQGLLALTGGKEGALARLLAEEQQSEAEAYLTLLQKIFPDRLYIELSRRSEEIE 185 Query: 179 ESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQ 238 E+ ++LA R +P+VATN V F+++ AH+ + I D +D P R R+ SP+ Sbjct: 186 EAAEEGLIDLAYDRDIPLVATNPVCFLEADFHPAHDAMLCIADSAYVDSPDR-RHSSPEA 244 Query: 239 YMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKR-AK 297 +M+S EEM LF DIPEA+ N++ IA+RC V + + LP GD E ++++ A Sbjct: 245 WMKSGEEMARLFEDIPEAIQNSLVIAQRCAVAAPVRKPILPSL-AGDREGETLMLRKDAW 303 Query: 298 EGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVP 357 GLE RLA + + R Y+ERL+ EL +I MGFPGYFLIV +FI+W+K N +P Sbjct: 304 AGLEARLAAMTTPVD-----RKAYEERLQYELNIIENMGFPGYFLIVADFIKWAKSNQIP 358 Query: 358 VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEH 417 VGPGRGSGAGS+VA+AL IT+LDPL LLFERFLNPERVSMPDFD+DFC +R +VI + Sbjct: 359 VGPGRGSGAGSVVAWALTITNLDPLRLGLLFERFLNPERVSMPDFDIDFCETRRSEVISY 418 Query: 418 VADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIP---PDPGMTLAKA 474 V YG D V+QIITFG M A+AV++D GRVL YG VDR++KL+P DP TL +A Sbjct: 419 VQHKYGLDHVAQIITFGRMKARAVLKDTGRVLQMSYGQVDRLAKLVPSQASDP-WTLDRA 477 Query: 475 FEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEG 534 P++ YE +E+V L+D+A KLEG+ R++ HA GVVI + PLY D Sbjct: 478 LNGVPEIASAYENEEDVHRLLDLAMKLEGLPRHSSTHAAGVVIGDRPLHQLVPLYRDPRS 537 Query: 535 KHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDK 594 PVTQFD VE GLVKFDFLGL+TL+++N A++M+ R + +D+ IPLDD+ Sbjct: 538 DFPVTQFDMKYVEKTGLVKFDFLGLKTLSVLNKAVQMLKARGVE-----VDLDHIPLDDE 592 Query: 595 KSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDR 654 F++L++ +T VFQLES GM+ + ++P FED+IALVAL+RPGP+ + + +F R Sbjct: 593 AVFELLKQGDTVGVFQLESEGMRRTLAAVKPTRFEDIIALVALYRPGPMDN--IPSFGAR 650 Query: 655 KHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK 714 K+G EEI YP H L+PVL+ TYGII+YQEQVMQ AQVL+GY+LG AD+LRRAMGK Sbjct: 651 KNGGEEIVYP-----HPLLEPVLKETYGIIVYQEQVMQAAQVLAGYSLGEADLLRRAMGK 705 Query: 715 KKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWL 774 K EM QRS F EG++K+ I A ++FDL++KFAGYGFNKSH+AAYALV+YQT WL Sbjct: 706 KIQSEMDAQRSRFVEGSKKHDITENQANQLFDLIDKFAGYGFNKSHAAAYALVAYQTAWL 765 Query: 775 KAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYG 834 KAHY AEF AA M DM T+K+ VD+ R GL+ LPPDIN F V +DG + Y Sbjct: 766 KAHYRAEFYAAAMCFDMALTDKLQVFVDDMRRSGLRYLPPDINRSQSDFTV-EDGCVRYA 824 Query: 835 IGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPH 894 +GA+KGVGE ++ I + R K G F+ L D R + + LNRR LE L +GAFD LG Sbjct: 825 LGALKGVGEKAMDDICQEREKNGAFKSLDDFANRINPEHLNRRQLESLASAGAFDSLGVD 884 Query: 895 RAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGER 954 R A+ S + A + GQ +FG+ EE + W ++ E+ Sbjct: 885 RCAVKQSSEMIIGTAANIHRMRKSGQGGLFGM--EEMAMPSIKLPEDKIWSLTERMNAEK 942 Query: 955 ETLGLYLTGHPINQYLKEIERYVGGVRLK----------------DMHPTE-RGKVITA- 996 E G + + HPI+ Y + G+R++ D +P + R K I Sbjct: 943 EAFGFFFSSHPIDNY----RSLLSGLRIRSRADINRLAPPSYPQDDENPQDYRKKRIATQ 998 Query: 997 -AGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIV 1050 A ++ R + RG R + D SG+ F + K + K++ ++ Sbjct: 999 MAAMIEDVRWRDSARGRRYMMVAASDASGQFFASCFDEKATKDLEQAAKEKACVL 1053 >UniRef50_B8FTK4 DNA polymerase III, alpha subunit n=2 Tax=Desulfitobacterium hafniense RepID=B8FTK4_DESHD Length = 1190 Score = 776 bits (2005), Expect = 0.0, Method: Compositional matrix adjust. Identities = 469/1095 (42%), Positives = 650/1095 (59%), Gaps = 53/1095 (4%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL VH++YS++DG A+ LVKKA LGMP++AITD + G++ FY A AGIKPI Sbjct: 3 FVHLHVHTEYSLLDGAARIEKLVKKAVELGMPSVAITDHGVMYGIIDFYKACKKAGIKPI 62 Query: 66 VGADFNV-------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDR 118 +G + V + D HL +LA N GY+NL L+S A+ G+ P +D+ Sbjct: 63 IGCEVYVAPHRRTEKVPGRDDNNRHLVLLAENEEGYKNLIKLVSMAHIEGF-YYKPRVDK 121 Query: 119 DWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRTGRPD 177 D L + GLI LS G+V LL E YEE F +FLE+ G + Sbjct: 122 DILRRHSRGLIALSACLAGEVSEYLLNNQLETAVESALEYEEIFGKGNFFLEVQDHGLEE 181 Query: 178 EESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQ 237 ++ E+ G+P+VATNDV +++ D ++ + I G L D R S + Sbjct: 182 QQRVNTGMFEVQRRTGIPMVATNDVHYVNKEDAFIQDVLICIQTGKNLTDASRMSFSSEE 241 Query: 238 QYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTED-YLVKRA 296 +++SE EM LF + PE L NT IA+RC V + G+ +LP F + T D YL K+ Sbjct: 242 FFLKSEAEMNLLFGEHPEILENTARIAERCQVDFKFGDNYLPVFEVPEGYTLDTYLRKKC 301 Query: 297 KEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGV 356 E +P++ R E ERL+ EL VI Q GF GYFLIV +F Q+++ NG+ Sbjct: 302 YEAF----PLFYPNQ------RTEEKERLDYELGVIAQTGFSGYFLIVADFCQYARQNGI 351 Query: 357 PVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIE 416 VGPGRGS A S+VAY + IT ++P++ DLLFERFLNPER+SMPD D+DF + R++VI Sbjct: 352 AVGPGRGSAAASMVAYLMGITTVEPMQHDLLFERFLNPERISMPDIDIDFDPDGRERVIN 411 Query: 417 HVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFE 476 +V + YG D V QIITFGTM AKA IRDVGRVLG P VD+++K IP D GMTL KA Sbjct: 412 YVMEKYGADKVCQIITFGTMGAKAAIRDVGRVLGIPLARVDKVAKAIPSDLGMTLEKALA 471 Query: 477 AEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKH 536 P L ++ E D E+K L ++AR LEG+ R+A HA GVVIA + + PL +G Sbjct: 472 VSPDLVKLLEEDGEIKKLYEIARSLEGMPRHASTHAAGVVIAKDALDTYIPLQRTSDGGF 531 Query: 537 PVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKS 596 +TQF VE GL+K DFLGLR LTII L+ I R + LD+ ++PLDDK + Sbjct: 532 TMTQFPMKTVEEVGLLKMDFLGLRNLTIIQETLKQIEGNRGE----VLDLQSLPLDDKAT 587 Query: 597 FDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKH 656 FDML +T VFQLES GM++++K L+P CFED+IA+VALFRPGP++ + FI RKH Sbjct: 588 FDMLSLGNSTGVFQLESGGMRNVLKELKPSCFEDIIAVVALFRPGPMEQ--IPEFIRRKH 645 Query: 657 GREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKK 716 G +V + H L+P+L TYG+I+YQEQVMQIA+ L+GY+LG AD+LRRAMGKKK Sbjct: 646 G------GNVSYLHPLLEPILRSTYGVIVYQEQVMQIARDLAGYSLGRADLLRRAMGKKK 699 Query: 717 PEEMAKQRSVF------------AEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764 E M ++R F GA K G+ + A +IFDL+ KFA YGFNK H+ AY Sbjct: 700 KEIMEEERQSFIYGLQSPSGEEIIPGALKLGLTEKEAAEIFDLMAKFAEYGFNKGHATAY 759 Query: 765 ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824 A++SYQT +LKA+YP EF AA+++ M + +KV + E + G++ILPPD+ F Sbjct: 760 AVISYQTAYLKANYPLEFNAALISTVMSSADKVSFYIHEARQSGIEILPPDVQYSQVGFS 819 Query: 825 VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884 + G I +G+GAI+ VG +E IIEAR + G F L+D C R D K LN+RVLE L+ Sbjct: 820 IEGRG-IRFGLGAIRNVGVNVVEKIIEARQE-GLFDSLYDFCIRVDAKVLNKRVLESLLK 877 Query: 885 SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944 +GAF L RA + +L L+ A Q + + GQ +F + E IE + + Sbjct: 878 AGAFSLLC-KRAQGLLALDSILEIAQQRQRDKESGQISLFDFGDDLDEGIE--LPDVEEY 934 Query: 945 PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004 + +L E+E LGLYL+GHP+ L +++ V L + E KVI G+V R Sbjct: 935 SPRELLTMEKEYLGLYLSGHPLESVLPKLKNAVSEDILTCLEGDEEKKVIL-GGIVTGYR 993 Query: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLK 1064 VTKRG + L+D +G ++V++F + +L E D++++V G+ + D K Sbjct: 994 TTVTKRGEMMASFVLEDLTGTIDVLVFPRIFAQSARLTE-DQVVVVEGRYNIRD--DERK 1050 Query: 1065 MTAREVMDIDEAREK 1079 + A + D++ E+ Sbjct: 1051 IFAERITDLENGAER 1065 >UniRef50_Q055U5 DNA-directed DNA polymerase, alpha subunit n=6 Tax=Leptospira RepID=Q055U5_LEPBL Length = 1176 Score = 775 bits (2001), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/1179 (35%), Positives = 683/1179 (57%), Gaps = 60/1179 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F HL +H++YSM+DG + L++ GM ++A+TD N+ G V+FY GIKPI Sbjct: 8 FAHLHLHTNYSMLDGAIRIKELMQHVKENGMSSVAMTDHGNMFGAVEFYNEATKQGIKPI 67 Query: 66 VGADFNVQ---------CDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPII 116 +G++F V + HL +LA N GY+NL L SK+Y G+ I Sbjct: 68 IGSEFYVSPNRKQETEMVKIADGSAYHLILLAKNEEGYKNLIRLSSKSYTEGFYKKARI- 126 Query: 117 DRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRTGR 175 D D L + N GL+ L+ G+V R +L G + E F + +++E+ G Sbjct: 127 DYDLLAQHNGGLVCLTACLAGEVNRKILEGKIDESFQLAGKLNEIFRKEDFYMEIQNHGI 186 Query: 176 PDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYS 235 P++ + + + G+P+V TND F+ D +A +I + I + DP ++ Sbjct: 187 PEQMTVAKQIYDFGKRTGIPLVVTNDSHFLKKDDQEAQDILLRIGMQKRITDPME-FGFN 245 Query: 236 PQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF--PTGDMSTEDYLV 293 + Y++S +EM +F +IPEA NT+EI+ + ++ ++ G Y LP+F P G + YL Sbjct: 246 GEFYVKSPDEMARVFPEIPEAFYNTLEISNKVDLKLQFGNYLLPEFEVPEG-YDADSYLE 304 Query: 294 KRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKD 353 K EG+ + +P+ PE +R+ EL I M F GYFLIV ++I ++K Sbjct: 305 KLIWEGIGRK----YPN------LSPEIKDRVVFELNTIKNMKFAGYFLIVQDYINYAKR 354 Query: 354 NGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQ 413 NG+PVGPGRGS AGS+VAYAL IT+++PL+ +LLFERFLNP+R MPD D DFC+E+R++ Sbjct: 355 NGIPVGPGRGSAAGSIVAYALGITNVEPLQHNLLFERFLNPDRKDMPDIDTDFCVERREE 414 Query: 414 VIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAK 473 VI ++ YG + V QIITF ++AAKA ++DV RVL P+G + ++K P GM++A+ Sbjct: 415 VINYIRRRYGEEKVGQIITFNSLAAKAALKDVARVLNLPFGEANEMTKAFPNKLGMSIAE 474 Query: 474 AFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEE 533 A +L E D+ + +A++LEG R G+HA GVVI+P + + PL E Sbjct: 475 ALTTSSELKNFSEKDDINHKIFAIAQRLEGNYRQPGRHAAGVVISPYPLEEVVPLSTVAE 534 Query: 534 GKHP-----VTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAA 588 + P VTQ+DK+++E GL+K D LGL+ LT +++A+++I +RR +D+ Sbjct: 535 KERPGSRSIVTQYDKNNLESIGLIKMDILGLKNLTTLDYAIKLIERRRGVR----IDLDE 590 Query: 589 IPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMV 648 IP +D ++ +L+++ T +FQLES G+ DL+ + Q + F++++AL+AL+RPGP+ GM+ Sbjct: 591 IPYNDANTYALLRKANTLGIFQLESTGITDLVAKSQVNNFDEIVALIALYRPGPMGEGML 650 Query: 649 DNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADML 708 D ++DRK GR++++YP H S +P+L+ T+G+ +YQEQVM I++V+ G+++G +D+L Sbjct: 651 DEYLDRKSGRKQVTYP-----HPSCEPILKETFGVPVYQEQVMSISRVVGGFSVGDSDVL 705 Query: 709 RRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVS 768 R+AM KKK + M K + F EGA K GI ++A +F+ +E+F GYGFNKSHS AYA+++ Sbjct: 706 RKAMAKKKADLMEKLKYQFVEGAVKQGIQEKVAKDLFEQLERFGGYGFNKSHSVAYAIIT 765 Query: 769 YQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDD 828 YQT +LKA+Y E++ A++ +D T +V ++ MG++IL PD++ F+V DD Sbjct: 766 YQTAYLKANYTIEYLTALLASDHGKTTDIVKYINNAREMGIRILNPDVSESQASFNVIDD 825 Query: 829 GEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAF 888 I +G+ A+KGVGE +IIEAR+K G F+ L D DT+ +N++V E LI +GA Sbjct: 826 ATIRFGLSAMKGVGETAANSIIEARDKAGNFKTLQDFALNIDTRLINKKVFEALIQAGAL 885 Query: 889 DRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQP----- 943 D G R L S+ L A + + GQ +FGV E S+ P Sbjct: 886 DSFGYTRKCLFESVDSILTFAQREQERTNEGQFSLFGVG-------ESSFTLNLPKDALE 938 Query: 944 WPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAA 1003 W L E+ GLYL+GHP+++Y K++ + + + ++ + G + AG++ + Sbjct: 939 WEIDEKLRREKAIAGLYLSGHPLDKYEKQL-KSLRTIPIEKFDNLKSGSKVEVAGIISSK 997 Query: 1004 RVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSG-----QVSFDD 1058 + ++KR L+DR+G +E + F KY++ +++D+ + + G +V + Sbjct: 998 NIKLSKRNEEFANFKLEDRTGEIECVAFAKTYQKYKEFIKEDQAIFIKGDLDKIEVGDTE 1057 Query: 1059 FSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDD-QLLNRLRQSLEPHR-SGTIPVH 1116 G +K+ + E++D +K + L + L +R +D +L+ +L L ++ ++ H Sbjct: 1058 LRGQVKVNSIEILDDTTIEDKLEKSLHLRLEERHTEDPELIPKLYALLACYKGESSVYFH 1117 Query: 1117 LYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSEQV 1155 + R + R +R T+ + P + L L L+G V Sbjct: 1118 IVEDREEKRV-IRAHDTYSIQPINELFLRLADLLGDRSV 1155 >UniRef50_C0R3A1 DNA polymerase III, alpha subunit n=9 Tax=Rickettsiales RepID=C0R3A1_WOLWR Length = 1158 Score = 773 bits (1997), Expect = 0.0, Method: Compositional matrix adjust. Identities = 444/1097 (40%), Positives = 666/1097 (60%), Gaps = 60/1097 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F+HLRVHS YS+++ K L+ MPA+AITD NL G ++F GI+ I Sbjct: 51 FIHLRVHSVYSLLESSVKIEELIGLCLRNKMPAVAITDSGNLFGSLEFAEYAASRGIQLI 110 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAY-QRGYGAAGPIIDRDWLIEL 124 +G + V+ ++ + +LA N GY NL L+S+++ +R + P +D D L+ L Sbjct: 111 IGCNIIVKH---SEQNLPILLLAKNEQGYTNLVTLVSESFRKRKNNSDIPYVDFDELLNL 167 Query: 125 NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHA 184 + GLI L+GG + + LL + V++ ++ + H ++EL R G E Sbjct: 168 STGLIALTGGCLAQL---LLGQDKETVEKLLSAFNGHL----YVELQRHGLSKELELEET 220 Query: 185 AVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDG-FTLDDPKRPRNYSPQQYMRSE 243 ++ A R +P+VATNDV F + SD++A++I I +G + L++ ++ + + Y +S Sbjct: 221 LIDFAYQRNIPLVATNDVFFPNRSDYEAYDILTCISEGSYALENNRK--KLTTEHYFKSV 278 Query: 244 EEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDY-LVKRAKEGLEE 302 EM ELF+DIPEA+ NT+ IAKRC+ R + LP+FP + TE+ L ++A GLE Sbjct: 279 AEMEELFSDIPEAIHNTLVIAKRCSYMPRSRQPILPKFPCRENKTENEELREQAVAGLEF 338 Query: 303 RLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGR 362 R+A E + + YD RL EL VI M + GYFLIV +FI+WSK NG+PVGPGR Sbjct: 339 RIA-----NETDIDLKQYYD-RLNYELSVITSMNYAGYFLIVSDFIRWSKANGIPVGPGR 392 Query: 363 GSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMY 422 GSGAGS+VA+ L+ITDLDP++F L+FERFLNP+R+SMPDFD+DFC EKRD VI++V Y Sbjct: 393 GSGAGSIVAWGLQITDLDPIKFGLIFERFLNPDRISMPDFDIDFCQEKRDLVIDYVQKKY 452 Query: 423 GRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP--GMTLAKAFEAEPQ 480 G V+QIITFG + A+AV+RDVGRVL PY VD+ISK++P +P +TL++A E + Sbjct: 453 GY--VAQIITFGKLQARAVLRDVGRVLQMPYSQVDKISKMVPFNPVNPVTLSQAIEFDQN 510 Query: 481 LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQ 540 L + ++DE + L+D++ KLEG+ R+ HA G+VI K+ +F P+Y D P+TQ Sbjct: 511 LQKERDSDEVIAKLLDISLKLEGIYRHVSTHAAGIVICDQKLENFVPVYYDPNSALPITQ 570 Query: 541 FDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDML 600 + VE AGL+KFDFLGL TLT+I+ +IN+ R K +DI+++PLDD+K+++ML Sbjct: 571 YSMKYVEKAGLIKFDFLGLGTLTLIDHVCRLINRDRQK-----IDISSVPLDDQKTYEML 625 Query: 601 QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE 660 ++ VFQLES GM++ + +L+PDC ED+IAL++L+RPGP+ + + ++ RKHG E+ Sbjct: 626 SSGDSIGVFQLESSGMREALIKLKPDCIEDIIALISLYRPGPMDN--IPTYVARKHGLEK 683 Query: 661 ISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM 720 PD + H L+ VL+ T+G+I+YQEQVM+IA++LSGY+L AD+LRRAMGKK EEM Sbjct: 684 ---PD--YIHPLLEEVLKETFGVIIYQEQVMEIARILSGYSLAEADLLRRAMGKKIKEEM 738 Query: 721 AKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA 780 KQR +F +GA KNG++ + A IFDLV KFAGYGFNKSH+AAYA++SYQT +LKA+YP Sbjct: 739 DKQRELFIQGATKNGVDYDRASYIFDLVAKFAGYGFNKSHAAAYAVISYQTAYLKANYPL 798 Query: 781 EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG 840 EF A+M ++D+ +K+ G+ +L PDIN F + D+ I YGI A++ Sbjct: 799 EFFTALMNLNIDDRDKLNLFYHAAKFSGVTVLSPDINKSQAEFSIEDE-RIRYGIAALRN 857 Query: 841 VGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMN 900 VG E I+ R+ +++++ + +N+R LE LI SGAFD + +R L Sbjct: 858 VGFSIAEGIVNVRSSAC--KDIWEFI-QNSGHIINKRALESLIKSGAFDSVHKNRKQLYE 914 Query: 901 SLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLY 960 S+ + A+++ + QA +FG L ++E + + + E+ L+ E +LG Y Sbjct: 915 SMDTLIYFANKNKQDRESSQAALFGSLDVLKPKLE----NVEDFDEEEKLEHELFSLGFY 970 Query: 961 LTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLD 1020 LT HP+ ++ +E+ G + AG+++ AR+ ++RG R I TL Sbjct: 971 LTNHPLEKFRTLLEKLNIGF-------IGENRTAKTAGVILNARMRTSERG-RFVILTLS 1022 Query: 1021 DRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKY 1080 D E+ + + +++E+ R L G D T DI E ++ Sbjct: 1023 DPHNVSEIAFYNN------EIIEEKRDLFSPGTFVIIDLEASENTTRLAGKDISEFTKRV 1076 Query: 1081 ARGLA-ISLTDRQIDDQ 1096 + + LT D Q Sbjct: 1077 TSTIKELVLTTECTDSQ 1093 >UniRef50_B1C7S2 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C7S2_9FIRM Length = 1215 Score = 771 bits (1990), Expect = 0.0, Method: Compositional matrix adjust. Identities = 429/1138 (37%), Positives = 675/1138 (59%), Gaps = 90/1138 (7%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS P F HL VH++YS++DG K L K +GM ++AITD N+ G+++FY A Sbjct: 1 MSIP-FTHLHVHTEYSLLDGFCKIKELPKLVKDMGMDSIAITDHGNMFGVIEFYRACRKE 59 Query: 61 GIKPIVGADFNVQC------DLLGDELT-HLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 GIKP++G + + D + D+ + H + A N GY+NL ++S AY G+ Sbjct: 60 GIKPVLGCEIYMTMGDRKGRDPMNDKQSFHFILFAENEIGYKNLMKVVSIAYTEGF-YYK 118 Query: 114 PIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF----PDRYFLE 169 P D D L + +EG+I S G + R + NS ++E + E D +FLE Sbjct: 119 PRADFDLLEKYSEGIIATSACIGGIIPRKI---NSGEIEEAKKYLERFINIYGKDNFFLE 175 Query: 170 LIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPK 229 + G +E++ +++A+ G+ ++ATND ++ SD +AH++ + + L D Sbjct: 176 IQDHGLEEEKTANEELIKMAKEYGVGLIATNDSHYLRKSDSEAHDVLLCVQTASNLSDEN 235 Query: 230 RPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGD-MST 288 R R + + Y+++ EEM +LF PEA+ NT +IA+RCNV + G Y LP FP + M++ Sbjct: 236 RMRFPNDEFYIKTPEEMSDLFKYCPEAIENTHKIAERCNVEIEFGHYHLPVFPLPEGMTS 295 Query: 289 EDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFI 348 + YL K +GL ++ + E ERLE EL VIN MGF YFLIV +FI Sbjct: 296 QQYLKKLCMDGLYKKYDNV----------TKELTERLEYELGVINDMGFNDYFLIVWDFI 345 Query: 349 QWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCM 408 +S+ + +PVGPGRGS AGS+V+Y L IT +DP+++ L+FERFLN ERVSMPD D+DFC Sbjct: 346 NYSRTHDIPVGPGRGSAAGSIVSYTLDITQIDPIKYALIFERFLNNERVSMPDIDIDFCY 405 Query: 409 EKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG 468 EKR + IE+V + YG D VSQI+TFGT+ KA ++D+ R +G + ++I+KLIP + Sbjct: 406 EKRHEAIEYVIEKYGFDNVSQIVTFGTLKPKAAVKDIARSMGISFDQSNKIAKLIPDEAK 465 Query: 469 MTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPL 528 +T+ KA P+L ++Y+ D +K L+D A+ +EG+ R++ HA GV+I+ ++D+ PL Sbjct: 466 ITIEKAIAMNPELHQMYDEDPTIKKLLDTAKAVEGMPRHSSTHAAGVIISDRAVSDYVPL 525 Query: 529 YCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAA 588 Y +++ QF+ + VE GL+K DFLGL+ LT+I L+ I + + +DI Sbjct: 526 YLNKDS--IAAQFNMTTVEELGLLKMDFLGLKNLTVIKHTLDNIKLSKGID----VDIDN 579 Query: 589 IPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMV 648 I L D+ FD + R +T VFQL S GM+ ++RL+P+ FED+IA ++L+RPGP+ M+ Sbjct: 580 ISLTDQNVFDTISRGDTIGVFQLASPGMQSFMQRLKPNTFEDIIAGISLYRPGPMD--MI 637 Query: 649 DNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADML 708 +ID KH ISY H SL+P+L TYGII+YQEQVMQI + L+GY++G +D++ Sbjct: 638 PTYIDNKHNPANISY-----LHPSLEPILNVTYGIIIYQEQVMQIVRDLAGYSMGRSDLI 692 Query: 709 RRAMGKKKPEEMAKQRSVFAEGAEKN----------------GINAELAMKIFDLVEKFA 752 RRAMGKKK E +AK+R +F G E+ GI+ + +I+DL+EKFA Sbjct: 693 RRAMGKKKHEVIAKEREIFLHGNEEAFNKGEDKEKVHGCVAIGIDEKTGNEIYDLMEKFA 752 Query: 753 GYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKIL 812 YGFNKSH+AAY ++SYQT +LK +YPAEFMAA++T + + ++++ ++ G+K+L Sbjct: 753 SYGFNKSHAAAYGVISYQTAYLKTYYPAEFMAALITVYIGSDDRML-YMNHLKEKGIKLL 811 Query: 813 PPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTK 872 PPD+N F V D+G + +G+ A+KG+GE IE II+AR + G F D + + Sbjct: 812 PPDVNKSYSRFTV-DNGSVRFGLLALKGLGESAIEEIIQAREEKGDFTSFPDFVNKIEFN 870 Query: 873 KLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLA-EEP 931 LN++ +E LI+SGAFD LG +R L D L + K GQ + +L+ EE Sbjct: 871 SLNKKGVESLILSGAFDSLGNNRRELYCVYEDFLNDTLRQRKQNIAGQTTLLEMLSQEEN 930 Query: 932 EQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERG 991 EQIE + + + + L E+E +G+Y++GHP+ ++ +++ +Y ++L +++ Sbjct: 931 EQIEMTIPTMAEFETKEKLKFEKEVMGMYISGHPLAEHEEDLNKYTS-MQLYEVYDRYGN 989 Query: 992 K---------------------------VITAAGLVVAARVMVTKRGNR-IGICTLDDRS 1023 K +IT GLV +V+ TK+ N+ + T++D + Sbjct: 990 KNSEEEEEAEPQPPVNNKYNKFNKNKRELITIGGLVTYVKVIYTKKDNKQMAFMTVEDLT 1049 Query: 1024 GRLEVMLFTDALDKYQQLLEKDRILIVSGQVSF--DDFSGGLKMTAREVMDIDEAREK 1079 +E+++F ++Y+ +L++D LI+ GQVS +D + + A ++ D+++ R + Sbjct: 1050 SDMEIVVFPRTFEEYKDILKEDNKLIIKGQVSVKEEDEEKSVSIIADKIWDMEDKRSR 1107 >UniRef50_Q4FM70 DNA polymerase III alpha subunit n=8 Tax=Candidatus Pelagibacter RepID=Q4FM70_PELUB Length = 1138 Score = 768 bits (1984), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/1063 (39%), Positives = 634/1063 (59%), Gaps = 38/1063 (3%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 ++ F HL++H+ YS+ +G K L +P L I+D +NLCG ++F Sbjct: 4 LNNQNFNHLKIHTQYSICEGAIKIDNLKDFCKEKKIPCLGISDTSNLCGALEFAENISKV 63 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 G +PI+G + + D L ++A N GY+ + L S++Y + P +D Sbjct: 64 GTQPIIGTQIYFKFE---DTTGLLPLIALNENGYKRIIELSSRSYLENDALSDPHLDVKE 120 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFY---EEHFPDRYFLELIRTGRPD 177 L+ EG+ LLSG G G+ +G +DE Y F D ++LE+ R G + Sbjct: 121 LLIDTEGVSLLSGTIQGLFGKLFEKGR---LDEISKLYRSLSSKFNDNFYLEIQRHGDQN 177 Query: 178 EESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQ 237 E ++ +E + +P++ATN+V ++ +AH+ I +++ R + YS Q Sbjct: 178 EIAFEKFNLEQSLKIQIPIIATNEVYYLTPDMHEAHDALTCIGSKTYVNEKNRIK-YSNQ 236 Query: 238 QYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKR-A 296 Y +S EEM +LF+D+PEAL N + +CN + + LP + + D ++K+ + Sbjct: 237 HYFKSNEEMSKLFSDLPEALENNFNLPFKCNFRPQFSKPVLPNISSEKGGSADEILKKDS 296 Query: 297 KEGLEERLAFLFPDEEERLK---RRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKD 353 +GL+E+ +F EE LK + +Y +RL+ EL++I +M +P YFLIV ++I+W+K+ Sbjct: 297 LDGLKEKFQKVFKIEENNLKTDDKFLKYKDRLDHELKIIIEMKYPSYFLIVSDYIKWAKN 356 Query: 354 NGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQ 413 N +PVGPGRGSGAGSLVA+ L ITD+DP++F+L+FERFLNP+RVSMPDFD+DFC EKRD Sbjct: 357 NDIPVGPGRGSGAGSLVAWCLSITDVDPIKFNLIFERFLNPDRVSMPDFDIDFCEEKRDL 416 Query: 414 VIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTL 471 V +++ Y +D+V+ IITFG + A+ VIRDVGRVLG PYGFVD ISK+IP DP +L Sbjct: 417 VFKYLTTKY-KDSVAHIITFGKLKARMVIRDVGRVLGLPYGFVDSISKMIPFDPSRPQSL 475 Query: 472 AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCD 531 + +EP+L ++ D VK L D++ KLEG+ RN HA GVVIA K+T+ PLY D Sbjct: 476 TECINSEPRLQKLVNEDPRVKKLTDLSLKLEGLNRNVATHAAGVVIADRKLTEVVPLYKD 535 Query: 532 EEGKH--PVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAI 589 P TQFD E AGL+KFDFLGL+TLT+IN ++INK+ I I Sbjct: 536 AAADLLLPSTQFDMYSAENAGLIKFDFLGLKTLTVINRTQKLINKKVKD-----FKIEDI 590 Query: 590 PLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVD 649 DD+K F++L T +FQ+ES GM++ + +++P+ ED+IALVAL+RPGP+ + + Sbjct: 591 DFDDQKVFELLSSGNTVGLFQVESAGMREALLQMKPNHIEDIIALVALYRPGPMSNIPIY 650 Query: 650 NFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLR 709 N D KHGR+ PD + H L+ +L+PTYG+I+YQEQVMQIAQ LSG+T G AD+LR Sbjct: 651 N--DCKHGRQT---PD--YLHPLLEDILKPTYGVIIYQEQVMQIAQKLSGFTAGEADILR 703 Query: 710 RAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSY 769 RAMGKKK E+ KQ+ F GA KNGI+ E+A IF +E FA YGFNKSH+AAYA++SY Sbjct: 704 RAMGKKKRAELEKQKQGFIAGALKNGISKEVAASIFLKIEPFAEYGFNKSHAAAYAIISY 763 Query: 770 QTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDG 829 QT +LK +YP EF AA MT D+ N K+ +E R+ +K++ PDIN F DD Sbjct: 764 QTAFLKTYYPKEFFAASMTMDISNQNKLGEFHEELKRINIKVIRPDINKCFADFQF-DDN 822 Query: 830 EIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFD 889 Y +G IK VG I +++ RN+ G F+ + D R + K +N+ LE L+ +GAFD Sbjct: 823 NFYYALGGIKSVGYEAISNVVKERNENGDFKSINDFLNRVNPKDINKLQLEGLVKAGAFD 882 Query: 890 RLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVV 949 + +R AL NS+ + + + +A Q D+FG + EQ + + + W + Sbjct: 883 NIDNNRQALFNSIPNFILKTKNIYENKAANQIDLFG---SDDEQDNEIVLNIEDWKFEDR 939 Query: 950 LDGERETLGLYLTGHPINQYLKEIERY-VGGVRLKDMHPTERGKVITAAGLVVAARVMVT 1008 L E E +G +++ HP+NQ+ + + Y + +++ T + I A L + R T Sbjct: 940 LSREFEAIGFFISDHPLNQFKEIFDDYKIVDYAQFNLNDTIKEANIAATLLKITER--KT 997 Query: 1009 KRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVS 1051 +GN G+ D + E+ +F+D L+ ++ L + LI++ Sbjct: 998 AKGNSYGVIKFTDLTSVFELFIFSDILELNREALVEGSSLIIT 1040 >UniRef50_B2TQR7 DNA polymerase III subunit alpha n=23 Tax=Clostridia RepID=B2TQR7_CLOBB Length = 1203 Score = 768 bits (1984), Expect = 0.0, Method: Compositional matrix adjust. Identities = 453/1208 (37%), Positives = 687/1208 (56%), Gaps = 83/1208 (6%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL +H+ YS++DG K ++ K LGM ++AITD L GLV FY A GIKPI Sbjct: 20 FVHLHLHTGYSLLDGSGKIKEIMAKTKELGMNSIAITDHGVLYGLVDFYKAALEYGIKPI 79 Query: 66 VGADFNVQCDLLG-------DELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDR 118 +G + V + + HL +L N GY+NL ++S A G+ P +D Sbjct: 80 LGCEVYVAGKSMKIKQPDKDNSTYHLVLLVKNEIGYRNLMKIVSTASIEGF-YYKPRVDH 138 Query: 119 DWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDE 178 ++L +EGLI LS G+V L+GN E Y+E F + ++LE+ G ++ Sbjct: 139 EYLKAHSEGLIALSACLGGEVQSYELKGNYEKAKETAILYKEIFKEDFYLEIQNHGMDEQ 198 Query: 179 ESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQ 238 ++L++ G+P+VATNDV +I + +H+I + I G T+DD R R S Q Sbjct: 199 RKVNEENIKLSKELGIPLVATNDVHYIKKDGYKSHDILMCIQTGKTVDDVNRRRYPSDQF 258 Query: 239 YMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFP--TGDMSTEDYLVKRA 296 Y++S EEM E+F+ IPEAL NTV+I+K+CN + E LP+FP G+ +YL Sbjct: 259 YLKSPEEMWEMFSYIPEALENTVKISKQCNYEYKFHESKLPKFPLPQGE-EPYNYLKNTC 317 Query: 297 KEGLEER------LAFLFPDEEERLKRRPEYD------ERLETELQVINQMGFPGYFLIV 344 GL ER L D +E + + D +RLE ELQ+I QMG+ YFLIV Sbjct: 318 YMGLIERYEEFKELRDKDLDYDELDDLKSKNDSAKNLIDRLEYELQIIRQMGYIDYFLIV 377 Query: 345 MEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDV 404 +FI+++ DNG+P GPGRGS AGS++AY L IT +DP+++ L+FERFLNPERVSMPD D Sbjct: 378 WDFIKFANDNGIPTGPGRGSAAGSIIAYTLGITKIDPIKYSLIFERFLNPERVSMPDIDS 437 Query: 405 DFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIP 464 DFC E+R +VI++V + YG D VSQIITFGTMAA+A IRDVGR + + Y VD+I K+IP Sbjct: 438 DFCYERRQEVIDYVVEKYGEDNVSQIITFGTMAARACIRDVGRAMNYSYSEVDKICKMIP 497 Query: 465 PDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524 G+T+ KA + P+L EIY+ DE VK+LIDM++ LEG+ R++ HA GVVIA T + Sbjct: 498 TMLGITIEKALDFNPELKEIYDKDERVKSLIDMSKDLEGLPRHSSTHAAGVVIASTPLVQ 557 Query: 525 FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584 + PL ++E VTQF + +E GL+K DFLGLRTLT++N AL++I + R + + Sbjct: 558 YVPLQKNDE--MIVTQFGMTTLEELGLLKMDFLGLRTLTVMNEALKIIKENRNID----I 611 Query: 585 DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644 D+ I +DK+ + M+ +T VFQLES GM +K L+PD ED+IA ++L+RPGP+ Sbjct: 612 DLDKIDFEDKEVYKMIGEGKTAGVFQLESPGMVSFMKELKPDSLEDIIAGISLYRPGPMA 671 Query: 645 SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704 + +I+ K E+ V++ L+ +L+ TYG+++YQEQVM+I + L+GY++G Sbjct: 672 E--IPRYIECKRNPEK-----VKYDAPELEEILDVTYGVMVYQEQVMEIVRKLAGYSMGR 724 Query: 705 ADMLRRAMGKKKPEEMAKQRSVFAE-----------GAEKNGINAELAMKIFDLVEKFAG 753 +DM+RRAM KKK + M ++R F G +NGI+ E A KIFD + FA Sbjct: 725 SDMVRRAMSKKKHKVMEEERKNFIHGIIENDEVVVPGCIRNGISEEAANKIFDNMMDFAS 784 Query: 754 YGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILP 813 Y FNKSH+AAYA+V YQT +L +YP E +AA++ + M ++EKVV + + +G+++LP Sbjct: 785 YAFNKSHAAAYAVVGYQTAYLMKYYPVEMIAAMLNSFMGSSEKVVYYISKAEELGIQVLP 844 Query: 814 PDINSGLYHFHVNDDGEIV-YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTK 872 PDIN F V GE + +G+ AIK VG I ++++ R G F LFD ++ D Sbjct: 845 PDINESFAKFAVK--GETIRFGLAAIKNVGMNLINSVVKTRENKGKFDSLFDFISKIDLS 902 Query: 873 KLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPE 932 +N+R +E LI SG FD +R+ L+ + + K GQ +F +++ Sbjct: 903 AINKRTIESLIKSGTFDSFKIYRSKLLAVYEKMVDSISSDRKRNIDGQISLFA--SDDIY 960 Query: 933 QIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIE----RYVGGV-------- 980 E Y + + ++ +L E+E GLY++GHP++ Y + ++ +G + Sbjct: 961 VPEIEYPNINEFDKRSLLTMEKEMTGLYISGHPLDDYAQSLKFQTSNEIGKIFSHHELLD 1020 Query: 981 ------RLKDMHPTERG----KVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVML 1030 L D+ E G + G++ VT+ + L+D +G +EV++ Sbjct: 1021 DTLEIQMLDDVINNESGINDNDRVILGGILTQVNKKVTRNNTIMAFLQLEDLTGTIEVIV 1080 Query: 1031 FTDALDKYQQLLEKDRILIVSGQVSFD-DFSGGLKMTAREVMDIDEAREKYARGLAISLT 1089 F LD+ ++L +D ++I+ G++S D L + E ++ + + Y R Sbjct: 1081 FPKVLDRVRELCNEDDLVIIKGRISLKTDELPKLICESIEPLEKINSSKIYLR------V 1134 Query: 1090 DRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGL 1149 I + L+ + L G P++++ D R + R + ++ L LR Sbjct: 1135 QNTIKAKELSLNLKELIKDYKGDTPIYIF--ATDQRQQFRVPRDRWLDINEESLGVLRKF 1192 Query: 1150 IGSEQVEL 1157 IG E V++ Sbjct: 1193 IGEENVKV 1200 >UniRef50_Q9ZJF9 DNA polymerase III subunit alpha n=51 Tax=cellular organisms RepID=DPO3A_HELPJ Length = 1211 Score = 768 bits (1982), Expect = 0.0, Method: Compositional matrix adjust. Identities = 447/1130 (39%), Positives = 673/1130 (59%), Gaps = 81/1130 (7%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F HL +H++YS++DG K L K+ LGM ++++TD N+ G + FY + GIKPI Sbjct: 7 FTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKKEGIKPI 66 Query: 66 VGADFNVQCDLLGDELT--------HLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIID 117 +G + + D D L+ HL + A N GY+NL L S AY G+ P I+ Sbjct: 67 IGMEAYIHND---DNLSSKETKQRFHLCLFAKNQEGYENLMFLSSMAYLEGF-YYFPRIN 122 Query: 118 RDWLIELNEGLILLSGGRMGDVGRSLLRGN-------SALVDEC---VAFYEEHFPDRYF 167 + L E ++G+I S G+V L N + DE Y+E F D ++ Sbjct: 123 KKLLREHSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKRIACEYQEIFEDDFY 182 Query: 168 LELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDD 227 LE++R G D+ ++++ GL ++ATND + +D A E+ + + G TL+D Sbjct: 183 LEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMCVAMGKTLND 242 Query: 228 PKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----------Y 276 R ++ + Y++S EEM +LFADIPEAL NT EIA +C + + L + Sbjct: 243 KGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKKNPPTPPSFK 302 Query: 277 FLPQFPTGD-MSTED---YLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVI 332 F + + +S ED Y +A+EGL ERL L P+E + +Y ERLE E++VI Sbjct: 303 FTKAYAQNEGLSFEDDASYFAHKAREGLRERL-ILVPEE-----KHEQYKERLEKEIEVI 356 Query: 333 NQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFL 392 M FPGY LIV +FI+++K+ G+PVGPGRGS AGSLVA+ALKITD+DPL++DLLFERFL Sbjct: 357 TNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDLLFERFL 416 Query: 393 NPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHP 452 NPERVSMPD D DFC +R ++IE++ + YG+ V+Q+ITF M AK VIRDV RVL P Sbjct: 417 NPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVARVLDMP 476 Query: 453 YGFVDRISKLIPPDPGMTLA----------KAFEAEPQLPEIYEADEEVKALIDMARKLE 502 Y D +KLIP G+TL A+E EP++ E+ E++E K + + + LE Sbjct: 477 YKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNEVAKQVWEYSLNLE 536 Query: 503 GVTRNAGKHAGGVVIAPTK-ITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRT 561 + RNAG HA +V+ K + PL+ E+ VTQ+ +E L+KFDFLGL+T Sbjct: 537 NLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFDFLGLKT 596 Query: 562 LTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIK 621 LT+I+ AL++I + + +D ++ +DD K + +Q +T +FQ+ES + L K Sbjct: 597 LTVIDDALKIIKTQHNID----VDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGLNK 652 Query: 622 RLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTY 681 RL+P FED+IA++AL RPGP++SGMVD+F++RKHG E I+Y + L+P+L+PTY Sbjct: 653 RLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGVEPIAYA-----FKELEPILKPTY 707 Query: 682 GIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELA 741 G I+YQEQVMQI Q + G++LG AD++RRAMGKK + MA ++ F EGA+ G + + A Sbjct: 708 GTIVYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKA 767 Query: 742 MKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLV 801 ++DL+ KFAGYGFNKSHSAAYA++++QT +LK +Y EFMAA++T++ + E V + Sbjct: 768 ANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYI 827 Query: 802 DECWRMGLKILPPDINSGLYHFHV----NDDGE----IVYGIGAIKGVGEGPIEAIIEAR 853 DE + ++++PP INS + F V N GE IV+G+GA+KGVG PI+ IIE R Sbjct: 828 DEVRALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAVKGVGGEPIKNIIEER 887 Query: 854 NKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLG---DALKAAD 910 KG Y + L D +R D KL ++ LE L+ SG+ D LG R ++ +L DA +A D Sbjct: 888 AKGDY-KSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKD 946 Query: 911 QHAKAEAIGQADMFGVL-AEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQY 969 + A G +FG + EQ+ + +L+ E ETLG++++G+P++++ Sbjct: 947 K-ANEMMQGGNSLFGAMEGGIKEQVVLDMVDLGEHDAKTLLECEYETLGIHVSGNPLDEF 1005 Query: 970 LKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKR-GNRIGICTLDDRSGRLEV 1028 +EI+ + V+ D+ E G G ++ + + KR G G + DR G+ E+ Sbjct: 1006 KEEIKGFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFEL 1065 Query: 1029 MLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEARE 1078 MLF L+ ++ L+ ++ L+ ++ + L++ E++D++ ARE Sbjct: 1066 MLFEKQLNALEE-LDINKPLVFKCKIEEQEEVARLRLF--EILDLESARE 1112 >UniRef50_A1ZEC3 DNA polymerase III alpha subunit n=2 Tax=Bacteroidetes RepID=A1ZEC3_9SPHI Length = 1403 Score = 767 bits (1981), Expect = 0.0, Method: Compositional matrix adjust. Identities = 440/1143 (38%), Positives = 668/1143 (58%), Gaps = 80/1143 (6%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F HL VHS +S++ A L+K A GMPA+A TD N+ K G G +K I Sbjct: 240 FSHLHVHSQFSILQSTASVGGLIKFAKEHGMPAIAFTDHGNMHAAFKAVGEGAKNDVKVI 299 Query: 66 VGADFNVQCDLLGDELT--------HLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIID 117 +G +F V + + T + +LA + Y L L S Y GY A P I Sbjct: 300 IGCEFYVAQERTKTKFTKSDRDRRFNQVLLAKDQEAYHRLAKLSSLGYIEGYYAGFPRIG 359 Query: 118 RDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPD 177 +D + E +EGLI L+G G++ +L +E ++ F D +++E++R G+ + Sbjct: 360 KDLIEEYHEGLIALTGNLQGEIPDLILNQGEHEAEEAFKWWHNLFGDDFYVEIMRHGQEE 419 Query: 178 EESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDG--------FTLDDPK 229 EE ++ A G+ +ATN+V +I D DAH+ + + FT D + Sbjct: 420 EERVNEVLLKFAAKYGVKPIATNNVYYIGDEDADAHDSLLCVKGADKKSTPKMFTPDIKR 479 Query: 230 RPRNY---SPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLP--QFPTG 284 R Y + + YM++ EEM ELF+DIP AL T EI +C+ + +P + P+ Sbjct: 480 RNLRYGMPNEEYYMKTPEEMNELFSDIPIALETTQEIVDKCSPIKLKRDILMPVYEMPSE 539 Query: 285 DMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIV 344 + +DYL EG +R + EE R ERL+ EL +I MGFPGYFLIV Sbjct: 540 FATQDDYLRHLTYEGATKRYGEI--TEEIR--------ERLDHELNIIKSMGFPGYFLIV 589 Query: 345 MEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDV 404 +FI ++D GV VGPGRGS AGS VA+ + IT++DP++++LLFERFLNPERVSMPD D+ Sbjct: 590 QDFINAARDMGVFVGPGRGSAAGSAVAFCIGITNIDPIKYNLLFERFLNPERVSMPDVDI 649 Query: 405 DFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIP 464 DF E R I +V D YG++ V+QIIT+GTMAAK I+DV RVL P ++++K +P Sbjct: 650 DFDDEGRQDAINYVIDKYGKNQVAQIITYGTMAAKMAIKDVARVLELPIPDSNKLAKYVP 709 Query: 465 PDPGMTLAKAFEAEPQLPEIY---EADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTK 521 PG L AF +L ++ E D E + L A+ LEG R G HA GV+IAP Sbjct: 710 DKPGTKLKDAFAEVQELKDVLARPEGDLENQVL-RQAKILEGSVRGTGIHAAGVIIAPDD 768 Query: 522 ITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGE 581 + + P+ ++ VTQFD +E AG++K DFLGL+TLT+I AL MI KN + Sbjct: 769 LLKYIPVCTSKDADLLVTQFDGKVIEDAGMLKMDFLGLKTLTVIKDALRMIK----KNYD 824 Query: 582 PPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPG 641 +D+ IPLDD+ + ++ Q ET FQ ES GM+ +K+L+P ED+IA+ AL+RPG Sbjct: 825 IDIDMDKIPLDDQATLELYQNGETVGTFQFESEGMRMYLKQLKPTNIEDLIAMNALYRPG 884 Query: 642 PLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYT 701 PLQ + NFI+RKHG EE+ YP H+ L+P+L TYGI++YQEQ+MQ AQ+L GY+ Sbjct: 885 PLQ--FIPNFINRKHGTEEVEYP-----HDLLEPILNNTYGIMVYQEQIMQTAQILGGYS 937 Query: 702 LGGADMLRRAMGKKKPEEMAKQRSVFAEGA-EKNGINAELAMKIFDLVEKFAGYGFNKSH 760 LGGAD+LRRAMGKKK EEM +Q +F +GA E +GI E + K+F+++++FA YGFN+SH Sbjct: 938 LGGADLLRRAMGKKKLEEMDRQEVIFMKGAKEIHGIPEEKSRKVFEVMKEFAKYGFNRSH 997 Query: 761 SAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGL 820 SAAY++V+YQT +LKA+YP+E+MA+V+T +M+N +KV +DE MGL+IL PD+N Sbjct: 998 SAAYSVVAYQTAYLKANYPSEYMASVLTHNMNNIDKVTFFIDETKNMGLQILGPDVNESE 1057 Query: 821 YHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLE 880 F VN G+I +G+GA+KG G+ +E IIE R K G F+++FD R + + +N++ E Sbjct: 1058 QSFTVNPVGQIRFGLGAVKGTGDAAVENIIEERKKNGPFKDMFDFARRVNLRTVNKKSFE 1117 Query: 881 KLIMSGAFDRLGP-HRAALMNSL--------------GDALKAADQHAKAEAIGQADMFG 925 +GAFD LG HRA ++ G+A + ++AK G + Sbjct: 1118 CFAQAGAFDNLGKLHRAQFFAAMPNDTATFLERIIKFGNAYQKEIENAKTSLFGASG--A 1175 Query: 926 VLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDM 985 V +P+ +PW + L+ E+E +G Y++GHP+++Y ++++ G V L + Sbjct: 1176 VTIAQPK-----VPYTEPWSQLEKLNREKEVVGFYMSGHPLDRYRAGMKKF-GAVALDKI 1229 Query: 986 HPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKD 1045 + +V T A +V + TK G +++D S +++ LF ++ + L+E + Sbjct: 1230 ESFQHQEV-TVACIVTKKELRQTKNGKPFTSFSIEDYSTSMDLALFGESHETLSDLIEVN 1288 Query: 1046 RILIVSGQV-----SFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNR 1100 ++++++G+V S D + ++ ++ ++E +EK RGL I + +++D+L+ + Sbjct: 1289 QLILLTGKVQKRYGSEDRY----ELRTSQIKPLEEMQEKMCRGLVIQVDIAKLNDELMEK 1344 Query: 1101 LRQ 1103 + + Sbjct: 1345 MEK 1347 >UniRef50_B2KB15 DNA polymerase III, alpha subunit n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KB15_ELUMP Length = 1167 Score = 767 bits (1980), Expect = 0.0, Method: Compositional matrix adjust. Identities = 439/1134 (38%), Positives = 672/1134 (59%), Gaps = 62/1134 (5%) Query: 6 FVHLRVHSDYSMIDG---LAKTAP--LVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 FVHL HS+YS++DG L++ P +K+ AA G A+AITD N+ G + FY A Sbjct: 3 FVHLHNHSEYSLLDGMLRLSEKGPSKFLKQVAADGFKAMAITDHGNMYGAMDFYKNAAAA 62 Query: 61 GIKPIVGADF--------NVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAA 112 GIKPI+G + N + L D+ HLT+LA + GYQNL LISKA+ G+ Sbjct: 63 GIKPIIGCEAYITNGSHKNKEKGL--DKTFHLTLLAKDYEGYQNLMALISKAWLDGF-YY 119 Query: 113 GPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELI 171 P ID+D L + +G++ LSG G+V + LL G A E YE Y++EL+ Sbjct: 120 HPRIDKDILAQHAKGIMALSGCLKGEVSQELLNGTFAQACEYAKTYESILGKGNYYIELM 179 Query: 172 RTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRP 231 G +E+ L +E++++ G+PVVATND + D+ AH+I + I G TLDDP R Sbjct: 180 DHGIEEEQIILPKLIEVSKSTGIPVVATNDCHYEKQEDWQAHDIHMCISMGKTLDDPNRL 239 Query: 232 RNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF--PTGDMSTE 289 ++ + + Y +S +EM ELF+ IPEA++NT+E+A++CNV + + LP F P T+ Sbjct: 240 KSSTHELYFKSAQEMAELFSYIPEAVSNTLEVAEKCNVVMPKSGFVLPVFDIPPSFSDTD 299 Query: 290 DYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQ 349 Y+ +EGL ++++ + P P Y ERL+ EL VI +MGF YFLIV +FI Sbjct: 300 SYIKNLCQEGLAKKMSGIIP---------PNYQERLDYELGVIGKMGFSSYFLIVADFID 350 Query: 350 WSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCME 409 +++ N +PVGPGRGSGAGS+VAY+L IT +DP++ LLFERFLNP+R+SMPD D+DF E Sbjct: 351 YARQNHIPVGPGRGSGAGSIVAYSLNITKVDPIKNGLLFERFLNPDRLSMPDLDIDFSDE 410 Query: 410 KRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGM 469 R+QVI +V + YG V+QIITFGTM AK ++DV RVL P +RI+KLIP D G Sbjct: 411 GREQVINYVRNKYGETNVAQIITFGTMKAKMAVKDVARVLNIPVSESNRITKLIPNDLGT 470 Query: 470 TLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLY 529 T+ A E +L + ++ + L D A+KLEG+ R+AG HA G+V+ +++ +APL Sbjct: 471 TIDSAIETVKELKQEIASNPQTAKLFDFAKKLEGLKRHAGIHAAGIVVTREEVSKYAPL- 529 Query: 530 CDEEGKHPVTQFDKSDV-EYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAA 588 + TQ++ + + GL+K DFLGLRTLTII+ A+++I R + +DI Sbjct: 530 ARGSKEAITTQYEGGILADDLGLLKIDFLGLRTLTIIDNAVDIIKNMRGID----IDIDN 585 Query: 589 IPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMV 648 IPLD+KK++++L ++T +FQLES GM+DL+KRL+P F D+ ALVAL+RPGP++SGM+ Sbjct: 586 IPLDNKKTYELLSSAKTLGIFQLESGGMRDLVKRLKPSEFSDISALVALYRPGPMESGML 645 Query: 649 DNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADML 708 ++F+ RK G+E+I+Y ++PVL+ TYG ++YQEQ+M+++++L G+T G AD L Sbjct: 646 ESFVRRKAGQEKITY-----DTPLMEPVLKETYGTMVYQEQIMELSKLLGGFTPGQADSL 700 Query: 709 RRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVS 768 R+AMGKKK +EM K R F G IN + A KIF+ + KFAGYGFNKSHS AYALVS Sbjct: 701 RKAMGKKKVDEMEKARVNFVNGCAGKKINPKTADKIFEQMSKFAGYGFNKSHSVAYALVS 760 Query: 769 YQTLWLKAHYPAEFMAAVMTADM--------DNTEKVVGLVDECWRMGLKILPPDINSGL 820 YQT +LKA+YP EFM +++T ++ D K+V ++E +MG + L PD+N Sbjct: 761 YQTAYLKANYPIEFMCSLLTNEIGHNAIGSDDKENKIVTYIEEAKKMGFETLGPDVNHSK 820 Query: 821 YHF---HVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRR 877 +F VN I +G+ A+K VG +I+ AR Y DL R D K N++ Sbjct: 821 ENFSIEEVNGKEIIRFGLEAVKNVGTEAAASIVSARGDRPYCG-FQDLLERIDLKASNKK 879 Query: 878 VLEKLIMSGAFDRLGP------HRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEP 931 +E LI +GA D L P RA ++ + D L+ + + + +FG + Sbjct: 880 TIESLIKAGALDSLIPGKTPNSARAVMLAEMEDMLEITAKIKEEKESSICSLFGEDSSAF 939 Query: 932 EQIEQSYASCQPWP--EQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTE 989 +++ P P ++ +L+ E+E LG Y +GHP+ +Y K +++ + V +++++ Sbjct: 940 VSVKKKETKTAPRPLKQEQLLEMEKEVLGFYNSGHPLAKYKKHMDK-IKSVTIEEINENN 998 Query: 990 RGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILI 1049 + G++ + KR ++D +G++ ++ + + +E + I+ Sbjct: 999 IKGAVNILGIITRVKKRQNKRKEDWAQFIIEDETGQMSANAYSRVYAEIAEKIENNAIVY 1058 Query: 1050 VSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTD--RQIDDQLLNRL 1101 ++G + D+ S ++ + I + A + I + + + +LLN L Sbjct: 1059 LTGDIKTDEESARTEIMVSNIESIIPVISRAAAKVTIDIPKGYSETNSRLLNTL 1112 >UniRef50_C6J6J2 DNA polymerase III (Fragment) n=4 Tax=Bacteria RepID=C6J6J2_9BACL Length = 1110 Score = 765 bits (1975), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/1091 (40%), Positives = 639/1091 (58%), Gaps = 63/1091 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL VHS+YS++DG A+ LV KAAA GM ALA+TD + G V FY GIKPI Sbjct: 39 FVHLHVHSEYSLLDGAARLEDLVAKAAASGMKALALTDHGVMYGAVPFYKLCKKHGIKPI 98 Query: 66 VGADFNVQCDLLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDR 118 +G + + + HL +LA N TGY+NL L S + G+ P ID Sbjct: 99 IGCEVYFTAGSRKERGSRKDQPIHHLILLAKNETGYRNLMKLCSIGHLEGFHYK-PRIDW 157 Query: 119 DWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDE 178 D L EGL+ LS G+V LLRG+ + Y+ F + ++LEL G P++ Sbjct: 158 DALQRHREGLVCLSACLGGEVPFHLLRGHYEEAKKAALRYQAAFGEDFYLELQDHGIPEQ 217 Query: 179 ESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQ 238 + V+LA G +V TND ++ D + ++ + + G T+DD R + ++ Q Sbjct: 218 KKVNPLLVQLAGEIGAELVVTNDAHYLSKEDAEVQDVLICVGTGKTVDDEDRLKMHTNQL 277 Query: 239 YMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF---PTGDMSTEDYLVKR 295 Y+++ EEM +LF +PEA ANT +IA C + + + LP + P G + YL + Sbjct: 278 YLKTAEEMAQLFPHLPEAYANTAKIADSCELELEFDRHILPAYRPIPEGH-TAGSYLAEL 336 Query: 296 AKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNG 355 ++GL +R L D L R + ++RL EL++I MGF YFLIV +FI ++ NG Sbjct: 337 CQQGLVDRYGEL--DVWRDLTEREKLEQRLRYELEIIASMGFSDYFLIVWDFIAFAHRNG 394 Query: 356 VPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVI 415 + GPGRGS AGSLVAY L+ITD+DP++++LLFERFLNPERV+MPD D+DF E+RD+VI Sbjct: 395 IATGPGRGSSAGSLVAYVLRITDVDPIKYNLLFERFLNPERVTMPDIDIDFSDERRDEVI 454 Query: 416 EHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAF 475 +V D YG + V+QIITFGTMAA+A +RDVGR L P+G VD+++KLIP GMT+ +A Sbjct: 455 AYVVDKYGAEHVAQIITFGTMAARAAVRDVGRALNVPFGEVDKVAKLIPGHLGMTIERAL 514 Query: 476 EAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGK 535 + P L +Y+ E VK L+DMA K+EG+ R+A HA GVVI+ +TD PL E + Sbjct: 515 KESPDLKAMYDGSERVKRLLDMAMKVEGMPRHASTHAAGVVISRDPLTDAVPL--QEGSE 572 Query: 536 H-PVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDK 594 H +TQ+ ++E GL+K DFLGLRTL+II + I + ++G+ P D +P +D Sbjct: 573 HTALTQYSMENLEAIGLLKMDFLGLRTLSIIERCMNWIKE---QSGDAP-DFRLVPDNDP 628 Query: 595 KSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDR 654 +++ML R ETT VFQLES GM+ ++K ++P FED+I+L+AL+RPGP++ + +I Sbjct: 629 ATYEMLGRGETTGVFQLESTGMRRVLKEMKPSVFEDIISLLALYRPGPME--FIPKYIAG 686 Query: 655 KHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK 714 KHG+ + YP H L+P+L+ TYGII+YQEQ+MQIA ++G++LG AD+LRRA+ K Sbjct: 687 KHGQITVEYP-----HPDLEPILKDTYGIIVYQEQIMQIASRMAGFSLGEADLLRRAVSK 741 Query: 715 KKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWL 774 KK E + +QR F G+ + G + A ++D++ +FA YGF ++H+AAY ++++QT +L Sbjct: 742 KKREVLDEQRGHFVSGSVQQGYTEDEANVVYDMIVRFADYGFARAHAAAYGVLAFQTAYL 801 Query: 775 KAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHF----------- 823 KAHYP +FMA+++TA + KV + EC RMG+ +LPPD+N F Sbjct: 802 KAHYPVQFMASMLTAVTGSHRKVAEYIVECRRMGIVVLPPDVNESSVLFTPQVGAGSADA 861 Query: 824 --------------HVNDD------GEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELF 863 H G I +G+ AIK VG IE+I+ R K F L Sbjct: 862 ALSGEAKGRDAKDGHAGSGQEPPALGVIRFGLAAIKNVGTQAIESILRER-KERPFDSLL 920 Query: 864 DLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADM 923 D C R D + N+RV+E LI GAFD L HRA L+ L + ++AA + K Q + Sbjct: 921 DFCRRVDLRTCNKRVIESLIQGGAFDSLPGHRAQLLAMLDETVEAALKWRKERDELQIQL 980 Query: 924 FGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLK 983 F + IE Y + LD ERE LGLYL+GHP++ + +E G RL Sbjct: 981 FDFVESPNWDIE--YPDVPKFTAAQQLDLERELLGLYLSGHPLDDFDALLEGE-GVDRLM 1037 Query: 984 DMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLE 1043 D+ AG+VV+ + + TK+G + L+D+ R EV+LF + + +E Sbjct: 1038 DLAEAPDDTRTVVAGMVVSVKTITTKQGKAMAFMELEDQIERCEVVLFPEVWRRSAAHVE 1097 Query: 1044 KDRILIVSGQV 1054 K +L + G V Sbjct: 1098 KGALLALRGVV 1108 >UniRef50_B5Y9K9 DNA polymerase III subunit alpha n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y9K9_COPPD Length = 1128 Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust. Identities = 437/1066 (40%), Positives = 634/1066 (59%), Gaps = 62/1066 (5%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 +FVHL VHS YS++DG+ LV++A LGMPA+AITD GLV+F GIKP Sbjct: 4 QFVHLHVHSAYSLLDGVTLPKKLVQRAKDLGMPAIAITDHGVTYGLVEFVSEAQRLGIKP 63 Query: 65 IVGAD-FNVQCDLLGDELT------HLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIID 117 IVG + + Q D E HL +L N G++NL +L++KAY G+ P D Sbjct: 64 IVGVEGYQAQRDRKKREGNKDKEPFHLVLLVKNALGFRNLNILLTKAYLEGF-YYRPRFD 122 Query: 118 RDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRTGRP 176 + L + +EGLI S G + R+LL G+ E Y++ F ++LE++ Sbjct: 123 WELLEQYHEGLIASSACLAGAIPRALLEGDEKKALELAGRYQDIFGKGNFYLEIMDHNLA 182 Query: 177 DEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSP 236 D++ A VEL++ G+P++ TNDV + ++ ++ +AI G TL+DP R + + Sbjct: 183 DQQRVNKAIVELSKRTGIPLLVTNDVHYGRPEEYSIQDVLMAIATGATLNDPNRFKYETD 242 Query: 237 QQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTED-YLVKR 295 Q Y++S +EM E F++ PEAL N++ IA+ + + LGE LP+F + TE+ YL K Sbjct: 243 QMYLKSADEMWERFSETPEALLNSLAIAEMVDFMLPLGEQHLPKFSVPEGYTENSYLRKL 302 Query: 296 AKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNG 355 ++GL +R + D + E +R+E EL VI +MGF GYFLIV ++I W+K G Sbjct: 303 TQDGLLKR----YGDNPSK-----EVLDRMEYELSVIEKMGFAGYFLIVQDYINWAKSQG 353 Query: 356 VPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVI 415 +PVGPGRGS AGSLVAY ITD+DPL++ LLFERFLNPER+SMPD DVDFC +RD+V+ Sbjct: 354 IPVGPGRGSAAGSLVAYLTGITDVDPLQYGLLFERFLNPERISMPDIDVDFCARRRDEVL 413 Query: 416 EHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAF 475 +V + YG + V+QI TFGT+AA+A IRDVGRVLG P VDR+SK IP + M LA A Sbjct: 414 RYVRNKYGEENVAQIATFGTLAARAAIRDVGRVLGVPLALVDRLSKSIPQN--MELAHA- 470 Query: 476 EAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYC--DEE 533 E + + + ++ ++++A+++EG+ R+A HA GVVIA + ++ L DE Sbjct: 471 EKLDDVKNLISQNPDLARVLEIAKQVEGLPRHASTHAAGVVIADKPLYEYVALQASSDEA 530 Query: 534 GKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDD 593 G + TQ K DVE GL+K DFLGLR +T+I+ AL I +R + +D+ + DD Sbjct: 531 GINVTTQLAKDDVEKLGLLKMDFLGLRNMTVISDALRWIKERYGID----VDLNKLSKDD 586 Query: 594 KKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFID 653 K ++ML ET AVFQLES G + +K L+P FE++IA AL+RPG L SG V +++D Sbjct: 587 SKVYEMLSAGETVAVFQLESSGFRSFLKDLKPTRFEEIIAAEALYRPGTLGSGGVKSYVD 646 Query: 654 RKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMG 713 RKHGRE + Y H+ LKP+LE TYGII+YQEQ+MQIA V++GY+LG AD+LRRA+ Sbjct: 647 RKHGREPVDY-----FHDDLKPILEETYGIIVYQEQIMQIASVIAGYSLGEADVLRRAIS 701 Query: 714 KKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLW 773 KKK EE+ K R F + G E KI++ + FA YGFNKSHSAAYA V+Y T W Sbjct: 702 KKKEEEILKLREDFVSRGVQRGYARETVEKIYETIVHFAEYGFNKSHSAAYAHVTYYTAW 761 Query: 774 LKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVY 833 LK++YP E+ AA++ + +DNTEK+ + E R+G+KILPPD+N ++F + EI + Sbjct: 762 LKSYYPTEYFAALLASFVDNTEKLKVYISEARRLGIKILPPDVNKSEHYFIPEGENEIRF 821 Query: 834 GIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGP 893 G+ IK VG +E I++ R GG F D R + + +N++V E LI +GAFD LG Sbjct: 822 GLLGIKNVGLAAVEEILKTRATGGPFSSFQDFLLRVNDRVVNKKVTESLIRAGAFDSLG- 880 Query: 894 HRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGE 953 R +L+ L + I +F + E S P ++ E Sbjct: 881 DRKSLLRQL------------STGITTQTLFQI-----EDTSNDDLSLDP------MEDE 917 Query: 954 RETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPT-ERGKVITAAGLVVAARVMVTKRGN 1012 RE LGLY+T HP+ +Y+ + L + E ++ G V + RV ++ N Sbjct: 918 REYLGLYITTHPLERYMA----ILSNQNLTALDSVGEIDGLVQVGGFVSSTRVRKSRNNN 973 Query: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDD 1058 + TL+D + ++EV + D ++ ++ K I+ +S +V +D Sbjct: 974 QYMTFTLEDLTSQVEVTVLPQKFDAFKPIISKPGIITLSARVESED 1019 >UniRef50_Q2GJ87 DNA polymerase III, alpha subunit n=8 Tax=Rickettsiales RepID=Q2GJ87_ANAPZ Length = 1127 Score = 761 bits (1964), Expect = 0.0, Method: Compositional matrix adjust. Identities = 449/1081 (41%), Positives = 648/1081 (59%), Gaps = 52/1081 (4%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHLR HSDYS+++G+ K LV MPA+A+TD NL G ++F AG++PI Sbjct: 5 FVHLRTHSDYSLLEGMIKVESLVAMCVEQKMPAVALTDSGNLFGSLEFSDCAARAGLQPI 64 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 +G N+ + G+ L ++ +LA + G+ NLT LIS + ++ D L++LN Sbjct: 65 IGC--NIMVEESGNNLGNILLLAKSAEGFANLTNLISNGFNNSQLEKINRVNIDDLLKLN 122 Query: 126 EGLILLSGGRMGDVGRSLLRGNSAL--VDECVAFYEEHFPDRYFLELIRTGRPDEESYLH 183 GLI L+GG + R+LL L +D + + F D ++EL R G + Sbjct: 123 GGLIALTGGHDDILARALLNNGDDLRALDSIL----QVFKDNVYVELQRHGLNGQREVEE 178 Query: 184 AAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSE 243 + A R +P+VATNDV F DF AH+I I G + R R +P+ Y ++ Sbjct: 179 LLIRFAYERNIPLVATNDVFFACRGDFQAHDILSCISTGAYVVQEDRHR-LTPEHYFKTA 237 Query: 244 EEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTE-DYLVKRAKEGLEE 302 EM ELF+D+PEA+ NT IA+RC+ + + LP FP + TE + L + A GLE Sbjct: 238 SEMYELFSDVPEAVLNTSLIAQRCSFIQEVRKPQLPHFPCFEGRTEAEELTECALAGLEI 297 Query: 303 RLAFL-FPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPG 361 RL D+EE+ R Y +RL+ EL V+ M + GYFLIV +FI+WSK N + VGPG Sbjct: 298 RLKSKGIGDDEEQ---RDLYLKRLKYELGVVISMEYSGYFLIVADFIRWSKQNDIMVGPG 354 Query: 362 RGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADM 421 RGSGAGSL+A++L ITDLDP+EF L+FERFLNP+RVSMPDFD+DFC EKRD+VIE+V + Sbjct: 355 RGSGAGSLIAWSLGITDLDPIEFGLIFERFLNPDRVSMPDFDIDFCQEKRDKVIEYVKEK 414 Query: 422 YGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP--GMTLAKAFEAEP 479 YG V+ IITFG + A+AV+RDVGRV+ PY +DRI K+IP DP +TL +A E + Sbjct: 415 YGY--VAHIITFGKLQARAVLRDVGRVMQIPYAQIDRICKMIPHDPISPVTLLEAIEMDQ 472 Query: 480 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 539 L E DE V LI+++ KLEG+ R+A HA G+VI + +F PLY D+ P+T Sbjct: 473 NLKAEQENDETVAKLIEISLKLEGLYRHASVHAAGIVICDQPLENFVPLYYDKSSSLPIT 532 Query: 540 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 599 Q++ VE AGLVKFDFLGLRTLT+I+ +I R GE ++++ IPL+DKK+++M Sbjct: 533 QYNMKYVEKAGLVKFDFLGLRTLTMIDQICSLIRAR----GEE-IELSKIPLNDKKTYEM 587 Query: 600 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 659 L ++ VFQLES GM++ I +L+PD +D+IAL++L+RPGP+ + + +I RKHG E Sbjct: 588 LSAGDSIGVFQLESAGMREAISKLRPDSIQDIIALISLYRPGPMNNIAI--YISRKHGLE 645 Query: 660 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 719 E PD + H L+ VL+ T+G+I+YQEQVM+IA++L+GY+LG AD+LRRAMGKK EE Sbjct: 646 E---PD--YIHPMLECVLKETFGVIIYQEQVMEIARILAGYSLGEADLLRRAMGKKIKEE 700 Query: 720 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 779 M +QR F +GA NGI A IFDLV KFAGYGFNKSH+AAYAL+S+QT +L+A+Y Sbjct: 701 MDRQRQDFVDGAVSNGIEESKASYIFDLVAKFAGYGFNKSHAAAYALISFQTAYLRANYT 760 Query: 780 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 839 EF A M D+D+ +K+ L + G+ ++PPDIN F V+ + I YG+GA+K Sbjct: 761 KEFFTASMNLDIDDKDKLGLLCQQAKMCGIDVMPPDINLSSAEFTVSGNS-IRYGLGALK 819 Query: 840 GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 899 VG+ I+ +GG + +++D + +R LE LI SG+ D + P+R L Sbjct: 820 NVGQLTAHEILPV--EGGRYSDIWDFAGNVRIRSPLKRTLESLIKSGSLDGIHPNRRQLF 877 Query: 900 NSLGDALKAADQHAKAEAIGQADMFGVLAEEPE-QIEQSYASCQPWPEQVVLDGERETLG 958 SLG L + + A F + +E+ E Q+E+ W E ++ E T+G Sbjct: 878 ASLGIILNIIENKKVSM---DAHQFSLFSEKEEGQLEE----VDDWTEDEKIEHEFATIG 930 Query: 959 LYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICT 1018 YL HP+++Y + + ++ GVR E+ +T VV++ M + R I Sbjct: 931 FYLRYHPLSKYEQVLGKF--GVRFVSSTQEEKESGVTKRAGVVSSVKMRSANKERFAIVR 988 Query: 1019 LDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSG---QVSFDDFSGGLKMTAREVMDIDE 1075 + D G +V + + +E++R L SG + D + ++ R + + E Sbjct: 989 VSDPHGVNDVAFYN------SKTIEENRDLFNSGVPVMIDMDYNASKGRLVGRNICNFHE 1042 Query: 1076 A 1076 + Sbjct: 1043 S 1043 >UniRef50_C3WEY7 DNA polymerase III alpha subunit n=1 Tax=Fusobacterium mortiferum ATCC 9817 RepID=C3WEY7_FUSMR Length = 1138 Score = 759 bits (1959), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/1179 (37%), Positives = 691/1179 (58%), Gaps = 71/1179 (6%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL +H++YS++DG+ K + +A LGM A+AITD NL G ++FY GIKPI Sbjct: 5 FVHLHLHTEYSLLDGVGKIDDYLGRAKELGMQAIAITDHGNLFGALEFYKKARKKGIKPI 64 Query: 66 VGADFNVQC-----DLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 +G + V C D G HL +LA +N GY+NL + S+++ RG+ P +D+++ Sbjct: 65 IGMEAYV-CERGMEDKEGRNF-HLILLARDNEGYRNLLKISSESFIRGF-YYKPRVDKNF 121 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNS-----ALVDECVAFYEEHFPDRYFLELIRTGR 175 L E +EGLI LS G++ R +L S + +DE V + + + +F+E+ G Sbjct: 122 LKEHSEGLIALSACMQGEISRRILDMESEDKISSAIDEYVDIFGK---ENFFIEVQANGI 178 Query: 176 PDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYS 235 ++ E+A+ L +VATND +++ + +I + + G L D KR R + Sbjct: 179 KEQFELNEKLYEIAKQNNLKLVATNDTHYVNEGEHTLQDILICVQTGAKLSDEKRMRIET 238 Query: 236 PQQYMRSEEEMC-ELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF--PTGDMSTEDYL 292 + +++S E++ +L EA+ NT+ IA+RCNV + G + P + PT + E +L Sbjct: 239 EELFLKSREQVLGQLGEKYLEAVDNTIIIAERCNVDIEFGHFKFPDYKIPTCVKTIEAFL 298 Query: 293 VKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSK 352 K GL +R +P + ER+E EL +I +MG+ GYF++V +FI +++ Sbjct: 299 RKLVYLGLSKR----YPHGLTK-----SIVERVEYELGIIEKMGYAGYFVVVWDFIDFAR 349 Query: 353 DNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRD 412 +P+GPGRGS AGSL+AYAL IT LDPL+++L+FERFLNPER+SMPD D+D C E+R Sbjct: 350 RKNIPIGPGRGSAAGSLIAYALGITQLDPLKYNLIFERFLNPERISMPDIDIDICQERRQ 409 Query: 413 QVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA 472 +VI++V + YG D V+QIITFGTM A+A IRDVGRVL P +D ++KL+P + T+ Sbjct: 410 EVIDYVIEKYGADKVAQIITFGTMKARAAIRDVGRVLNTPLSKIDAVAKLVPFNA--TIK 467 Query: 473 KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDE 532 + E + + Y D E++ +ID++ K+E R+A HA G+VI +TD PLYCD Sbjct: 468 QTLEGVEEFRKQYLEDREIQKVIDISAKIENKVRHASVHAAGIVITKDPLTDTVPLYCDT 527 Query: 533 EGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLD 592 + K TQ+ ++E GL+K DFLGLR LT + ++ I + GE + + IPL+ Sbjct: 528 KNKVVSTQYQMKELEDLGLLKMDFLGLRNLTNLQRTIDYI---KEDLGE-EIRLEDIPLN 583 Query: 593 DKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFI 652 KK +++L R +T+ VFQ+ES G++ ++ +L+PD FED+IAL+AL+RPGPL SGMVD+FI Sbjct: 584 SKKVYELLSRGDTSGVFQMESVGIRKILVKLKPDKFEDIIALLALYRPGPLGSGMVDDFI 643 Query: 653 DRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAM 712 + K+G EI YP H SL+ L+ TYG+ILYQEQVM+IA +++GY+LG AD+LRRAM Sbjct: 644 NGKNGITEIKYP-----HPSLEQTLKETYGVILYQEQVMKIANIMAGYSLGEADLLRRAM 698 Query: 713 GKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTL 772 GKK + M + R F + +NG + E A+++F+L++KFAGYGFNKSHSAAYAL++Y T Sbjct: 699 GKKNVQIMEENREKFITRSIENGYSEEKALEMFELIDKFAGYGFNKSHSAAYALIAYWTA 758 Query: 773 WLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIV 832 + KAHY + AA+MT++M + E + VD+ LK+ PD+N F V+ DG IV Sbjct: 759 YFKAHYMKHYYAALMTSEMAHIEDIAYYVDDAKVHNLKLHLPDVNRATSKFIVDKDG-IV 817 Query: 833 YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892 + + AIK VGEG E I+E N+ G ++ L D RT LN++ LE LI++GA D L Sbjct: 818 FSLAAIKNVGEGVSEKILEEYNENGEYKNLEDFVVRTKKYGLNKKALESLILAGALDGLP 877 Query: 893 PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEE------PEQIEQSYASCQPWPE 946 +R S+ + A++ K + I Q ++FG P+ E S Sbjct: 878 GNRRQKFESVDKIIDYANRKLKEDDIQQMNLFGEAKSSLGVFTLPQVTEYSLDE------ 931 Query: 947 QVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGK---VITAAGLVVAA 1003 +L E+E LG Y + HP++ Y R + RL ++ + K ++ G++ Sbjct: 932 --LLSKEKEYLGFYFSAHPLDSY----RRLIKVFRLSPINEIKEEKTTQILKTCGILRDV 985 Query: 1004 RVMVTKRGNRI-GICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSG- 1061 + +VTK +I G+ L+D ++ +LF ++Y +L + + + + G + D F G Sbjct: 986 KKIVTKNSGQIMGVFELEDYYDKISCVLFPKDYERYTHILLEGKPVYIEGSIQIDYFKGT 1045 Query: 1062 -GLKMTAREVMDIDE-AREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYY 1119 K+ R++ +D+ REK L + + + D + +RL++ L G PV ++ Sbjct: 1046 ENKKLIVRKLKFLDDIVREK---NLKLYILMVEEDREKFSRLKEILNKS-VGETPV--FF 1099 Query: 1120 QRADARARLRFGATWRVSPSDRLLNDLRGLIGSEQVELE 1158 D + + + ++P L+++ L+G E+V ++ Sbjct: 1100 AIKDKNHKEIKKSKYNITPDKIFLDEIVELMGEERVTIK 1138 >UniRef50_A0PYC7 DNA polimerase III, alpha chain n=22 Tax=Bacteria RepID=A0PYC7_CLONN Length = 1167 Score = 757 bits (1955), Expect = 0.0, Method: Compositional matrix adjust. Identities = 446/1207 (36%), Positives = 691/1207 (57%), Gaps = 91/1207 (7%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M +FVHL H++YS++DG K L+++A LGM +LAITD + G V FY A Sbjct: 1 MKGQKFVHLHTHTEYSLLDGSGKIGGLIERAKELGMDSLAITDHGTMFGCVDFYKKAKEA 60 Query: 61 GIKPIVGADF-------NVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 GIKPI+G++ N++ + ++ HL +L N GY+NL ++SKA G+ Sbjct: 61 GIKPIIGSEIYVASKSMNIKRNDRENKNHHLVLLVKNEIGYKNLMKIVSKAAIDGF-YYK 119 Query: 114 PIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRT 173 P +D ++L E +EGLI LS G+V +LL G E FY++ F D ++LEL Sbjct: 120 PRVDHEYLREHSEGLIALSACLAGEVSYNLLNGTKEKAREVALFYKDIFKDGFYLELQYH 179 Query: 174 GRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRN 233 G + +EL+ +P+VATNDV +I D +H++ + I G TLDD R R Sbjct: 180 GIDKQLRVNEMLIELSRELDIPLVATNDVHYIKKEDAKSHDVLLCIQTGKTLDDTDRMR- 238 Query: 234 YSPQQ-YMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTE-DY 291 Y PQ Y++S EEM + F+ +PEAL NTV+IA+ CN E LP FP + +Y Sbjct: 239 YEPQNFYLKSPEEMYDTFSYVPEALENTVKIAEECNFDYVFHESKLPNFPLPESKDHFEY 298 Query: 292 LVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWS 351 + + +GL+ R +P+ PE ERLE EL VI QMG+ YFLIV +F ++S Sbjct: 299 MKELCYKGLKVR----YPE------ITPELKERLEYELGVIKQMGYVDYFLIVWDFFRFS 348 Query: 352 KDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKR 411 + G+ GPGRGS AGSLVAY L IT +DP++++L+FERFLNPERVSMPD D DFC E+R Sbjct: 349 HEKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLIFERFLNPERVSMPDIDSDFCYERR 408 Query: 412 DQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL 471 +VI++V + YG+D VSQI+TFGTMA +A IRDVGR + + Y VDRI+K+IP G+T+ Sbjct: 409 GEVIDYVVEKYGKDNVSQIVTFGTMAPRACIRDVGRAMNYSYAEVDRIAKMIPTVLGITI 468 Query: 472 AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCD 531 KA E P+L E Y+ D VK LID+AR LEG+ R+ HA GVVIA + ++ PL + Sbjct: 469 DKALEMNPELKEAYDIDSRVKELIDVARDLEGLPRHTSTHAAGVVIASQPLVNYVPLSKN 528 Query: 532 EEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPL 591 EE VTQF + +E GL+K DFLGLRTLT+I A++++ K+ +D+ I Sbjct: 529 EEA--IVTQFTMTTLEELGLLKMDFLGLRTLTVIRDAIDLVKKKTG----TEIDLDKINF 582 Query: 592 DDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNF 651 +D+ + ML + +T VFQLES GM + +K L+P+ ED+IA ++L+RPGP+ + + Sbjct: 583 EDENVYAMLGKGKTVGVFQLESAGMTNFMKELKPESLEDIIAGISLYRPGPMAE--IPKY 640 Query: 652 IDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRA 711 I K+ + D+++ L+P+L TYG+++YQEQVMQI + L+GY++G +D++RRA Sbjct: 641 IKNKNNPK-----DIEYLTPKLEPILNVTYGVMVYQEQVMQIVRDLAGYSMGRSDLVRRA 695 Query: 712 MGKKKPEEMAKQRSVFAEGAE------------KNGINAELAMKIFDLVEKFAGYGFNKS 759 M KKK + M ++R F G E +NGI+ E+A KI+D + FA Y FNKS Sbjct: 696 MSKKKHKVMEEERKNFIYGIEDEKGNVIVPGCLRNGISEEVANKIYDQMMDFASYAFNKS 755 Query: 760 HSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSG 819 H+AAYA+V+Y T +L +YP EFMAA++ + N++KV + +M +++LPP IN Sbjct: 756 HAAAYAVVAYYTAYLVYYYPTEFMAAILNSVRGNSDKVAAYIRAAKQMEIEVLPPKINKS 815 Query: 820 LYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVL 879 F V +G+I +G+ AIK VGE ++ I + R + G F D C + + +N+R++ Sbjct: 816 FGKFTVQ-NGKIRFGLSAIKNVGENVVDNIAKVREEKGEFNSFVDFCNKISSGSINKRMV 874 Query: 880 EKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYA 939 E L+ +GAFD G +R+ ++ + + K GQ +FG +E + E Y Sbjct: 875 ESLVKAGAFDCFGIYRSQILAVYEKIIDSVVNQRKKNIDGQMSLFGSFDDEFKDTEIKYP 934 Query: 940 SCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKD--------------- 984 + + ++ L E+E GLYLTGHP+ Y +E+ + + D Sbjct: 935 AIDEFDKKSKLAMEKEMTGLYLTGHPLEDY-EEVLKNRTSAKTTDIIVDESLEEELIDEV 993 Query: 985 -MHPTER------GKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDK 1037 +H E+ G + GL+ +T+ + + TL+D +EV++F L++ Sbjct: 994 TLHIEEQNSKIKDGDKVIIGGLITNVTRKITRTNSMMAFITLEDLYSSIEVIIFPKTLEQ 1053 Query: 1038 YQQLLEKDRILIVSGQVSFDDFSGGLKMTARE------VMD-IDEAREKYARGLAISLTD 1090 + +++ +D I+++ G+V T RE + D I+ ++ L I + + Sbjct: 1054 FNKIIMEDEIVLIKGRV-----------TKREDEQPKIICDYIERVFNFSSKKLYIQIEN 1102 Query: 1091 RQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLI 1150 +++ Q + +++ + +G IP+ Y + R + + ++ ++ +L ++ Sbjct: 1103 KKMLSQTKSDIKK-IAILNNGNIPI--YICTKEERKKFLISREFWINENEDVLKIIKQKY 1159 Query: 1151 GSEQVEL 1157 G E V+L Sbjct: 1160 GEENVKL 1166 >UniRef50_Q9XDH5 DNA polymerase III subunit alpha n=6 Tax=Bacteria RepID=DPO3A_THEAQ Length = 1220 Score = 757 bits (1954), Expect = 0.0, Method: Compositional matrix adjust. Identities = 474/1192 (39%), Positives = 690/1192 (57%), Gaps = 107/1192 (8%) Query: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVK--KAAALGMPALAITDFTNLCGLVKFYGAGHG 59 S+ +F HL H+ +S++DG AK L+K K PALA+TD NL G V+FY Sbjct: 3 SKLKFAHLHQHTQFSLLDGAAKLQDLLKWVKETTPEDPALAMTDHGNLFGAVEFYKKATA 62 Query: 60 AGIKPIVGADFNVQCDLLGDE---------LTHLTVLAANNTGYQNLTLLISKAYQRGYG 110 G+KPI+G + V + D HLT+LA + TGYQNL L S+AY G+ Sbjct: 63 MGVKPIIGYEAYVAAESRFDRKRGKGLDGGYFHLTLLAKDFTGYQNLVRLASRAYLEGF- 121 Query: 111 AAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170 P IDR+ L E +GLI LSG ++ + +L+ L + + F DR+F+E+ Sbjct: 122 YEKPRIDREILREHAQGLIALSGCLGAEIPQFILQDRLDLAEARLNEDLSIFGDRFFIEI 181 Query: 171 IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230 G P+++ E A GL +VATND ++ D AHE+ +AI TLDDP+R Sbjct: 182 QNHGLPEQKKVNQVLKEFARKYGLGMVATNDGHYVRKEDARAHEVLLAIQSKTTLDDPER 241 Query: 231 PRNYSPQQYMRSEEEMCELFADIP---EALANTVEIAKRCNVTVRLGE---YFLPQFPTG 284 R + Y+++ EEM + + E NTVEIA+ C+V + +G+ Y +P+FP Sbjct: 242 WRFPCDEFYVKTPEEMRAMLPEAEWGDEPFDNTVEIARMCDVDLPIGDKMVYRIPRFPLP 301 Query: 285 DMSTE-DYLVKRAKEGLEER----------------LAFLFPDEEERL------------ 315 + TE YL + GL R L + P +ER Sbjct: 302 EGRTEAQYLRELTFLGLLRRYPDRITEAFYREVLRLLGTMPPHGDERALAEALARVEEKA 361 Query: 316 -----KRRPEYD-----------ERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVG 359 KR P + R EL VI +MGFPGYFLIV ++I W++ +GV VG Sbjct: 362 WEELRKRLPPLEGVREWTAEAILHRALYELSVIERMGFPGYFLIVQDYINWARGHGVSVG 421 Query: 360 PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVA 419 PGRGS AGSLVAYA+ IT++DPL F LLFERFLNPERVSMPD D DF +RD+VI++V Sbjct: 422 PGRGSAAGSLVAYAVGITNIDPLRFGLLFERFLNPERVSMPDIDTDFSDRERDRVIQYVR 481 Query: 420 DMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIP-----PDPGMTLAKA 474 + YG D V+QI TFG++A+KA ++DV RV G P+ + ++KLIP P P L +A Sbjct: 482 ERYGEDKVAQIGTFGSLASKAALKDVARVYGIPHKKAEELAKLIPVQFGKPKP---LQEA 538 Query: 475 FEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEG 534 + P+L E DE ++ +I++A +LEG+ R+A HA GVVIA +TD PL D+EG Sbjct: 539 IQVVPELRAEMEKDERIRQVIEVAMRLEGLNRHASVHAAGVVIAAEPLTDLVPLMRDQEG 598 Query: 535 KHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDK 594 + PVTQ+D VE GL+K DFLGLRTLT ++ A ++ + + LD +PLDD Sbjct: 599 R-PVTQYDMGAVEALGLLKMDFLGLRTLTFLDEARRIVKESKGVE----LDYDRLPLDDP 653 Query: 595 KSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDR 654 K+F++L R ET VFQLES GM ++ L+P ED+IALV+L+RPGP++ + +I R Sbjct: 654 KTFELLSRGETKGVFQLESGGMTATVRGLKPRRLEDIIALVSLYRPGPMEH--IPTYIRR 711 Query: 655 KHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK 714 HG+E +SY + + L+P+L+ TYGI +YQEQ+MQIA ++GY+LG AD+LRRAMGK Sbjct: 712 HHGQEPVSYAEFPHAEKYLRPILDETYGIPVYQEQIMQIASQVAGYSLGEADLLRRAMGK 771 Query: 715 KKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWL 774 K+ EEM K R F GA++ G+ E A ++FD++E FA YGFNKSH+AAY+L+SYQT ++ Sbjct: 772 KRVEEMQKHRERFVRGAKERGVPEEEANRLFDMLEAFANYGFNKSHAAAYSLLSYQTAYV 831 Query: 775 KAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYG 834 KAHYP EFMAA+++ + +++KV + + +G+ +LPPD+N + F V + EI++G Sbjct: 832 KAHYPVEFMAALLSVERHDSDKVAEYIRDARALGIPVLPPDVNRSGFDFKVVGE-EILFG 890 Query: 835 IGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPH 894 + A+K VGE AI+E R +GG F+ L D R + +N+R LE L+ +GA D G Sbjct: 891 LSAVKNVGEMAARAILEERERGGPFKSLGDFLKRLPEQVVNKRALESLVKAGALDAFG-D 949 Query: 895 RAALMNSLGDALKAADQHAKAEAIGQADMFGVLA--EEPEQIEQSYASCQPWPEQVVLDG 952 RA L+ SL L+ A A+ G++ + G+ A EEP +E S P E +L Sbjct: 950 RARLLASLEPLLRWA---AETRERGRSGLVGLFAEVEEPPLVEAS-----PLDEITMLRY 1001 Query: 953 ERETLGLYLTGHPINQY--LKE-----IERYVGGVRLKDMHPTERGKVITAAGLVVAARV 1005 E+E LG+Y++GHP+ +Y L+E IE VR P + +G+V Sbjct: 1002 EKEALGIYVSGHPVLRYPGLREVASCTIEELSEFVRELPGKPK-----VLLSGMVEEVVR 1056 Query: 1006 MVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKM 1065 T+ G + TL D +G LEV++F A + L++D L+V +V + L++ Sbjct: 1057 KPTRSGGMMARFTLSDETGALEVVVFGRAYEGVSPKLKEDIPLLVLAEVEKGE---ELRV 1113 Query: 1066 TAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHL 1117 A+ V ++E E + L + + +D++ + RL+ L+ H G++PV+L Sbjct: 1114 LAQAVWTLEEVLEA-PKALEVEVDHALLDEKGVARLKSLLDEH-PGSLPVYL 1163 >UniRef50_Q2S3X0 DNA polymerase III, alpha subunit n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S3X0_SALRD Length = 1166 Score = 755 bits (1950), Expect = 0.0, Method: Compositional matrix adjust. Identities = 446/1197 (37%), Positives = 674/1197 (56%), Gaps = 76/1197 (6%) Query: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 P F HL H+ YS++DG A L++ A +PA+AITD NL G+ +FY + ++ Sbjct: 2 PNFSHLHCHTQYSLLDGAAGIDHLIESAERRDIPAVAITDHGNLYGVPEFYTTAQKSDVQ 61 Query: 64 PIVGADFNVQCDLLGDELT----HLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRD 119 PI+G +F + + D+ H +LA N TGY+NL L S ++ G+ P ID D Sbjct: 62 PIIGCEFYLTPSGIQDQSDPTRYHQVLLAKNQTGYENLMQLSSTSFLEGF-YYKPRIDLD 120 Query: 120 WLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEE 179 L + +EGL+ + G V + +L E Y + F D Y++E+ D+ Sbjct: 121 LLRKHHEGLVATTCCLQGQVPQMILNQGEEAAQEKFEEYLDIFGDDYYIEIQDHDIDDQH 180 Query: 180 SYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQY 239 + ++ A A + V+ATNDV ++D D +A +I + + G +DP R R + Q Y Sbjct: 181 TVNEVLLQWARAYDVEVLATNDVHYVDQQDHEAQDILLCLQTGDDYNDPDRMRFSNDQFY 240 Query: 240 MRSEEEMCELFADIPE-----ALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVK 294 ++ M E IPE AL NT ++A +C+ + +G+ +P +P Sbjct: 241 LKDSAGMMEALTGIPEEFQREALVNTNKVADKCSFDLPMGDLLMPHYPI----------- 289 Query: 295 RAKEGLEERLAFLFPDEEERLKRR-----PE-YDERLETELQVINQMGFPGYFLIVMEFI 348 EG E+ +L ER K R P+ +RL EL +I G+ GYFLIV +F Sbjct: 290 --PEGFEDMDGYLRHLTFERAKERYGDPLPQTVVDRLNHELGIIADEGYSGYFLIVQDFT 347 Query: 349 QWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCM 408 +++ V VGPGRGS AGS V+Y L IT++DPLE+DLLFERFLNPERVSMPD D+DF Sbjct: 348 DAARELDVRVGPGRGSAAGSCVSYCLGITNVDPLEYDLLFERFLNPERVSMPDIDIDFDD 407 Query: 409 EKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG 468 R++VI++V + YG++ V QI+TFGTM AK +RDV RVL P D I+K+IP PG Sbjct: 408 RGREKVIDYVVEKYGQENVCQIVTFGTMGAKTAVRDVSRVLDIPLDRADEIAKMIPDGPG 467 Query: 469 MTLAKAFEAEPQLPEIYEADE-EVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAP 527 + L +AF+ P + +A+ EV ++ A LEG R+ G HA GV+IAP +I+D+ P Sbjct: 468 VDLEQAFDENPDFRALKDANNPEVSKMMQYAEVLEGSVRHTGVHAAGVIIAPGEISDYVP 527 Query: 528 LYCDEEGKHPV--TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLD 585 + + V TQ+D VE GL+K DFLGL+TLT+I A+E++ R + L+ Sbjct: 528 VSVAKSKGEEVVTTQYDGDWVEEFGLLKMDFLGLKTLTLIEDAVELVEDTRDVD----LN 583 Query: 586 IAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQS 645 I IPLDD+ +F++ QR +T ++FQ ES GM++ +++L+P D+IA+ AL+RPGP+++ Sbjct: 584 IDDIPLDDEATFELFQRGDTVSIFQFESTGMREHLRKLKPTEIGDLIAMNALYRPGPMEN 643 Query: 646 GMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGA 705 + ++ RKHG+EE+ YP H L+ +LEPTYGI ++QEQVMQ+A+ L+G++LG A Sbjct: 644 --IPTYVARKHGQEEVEYP-----HPLLEDILEPTYGIAVFQEQVMQMARELAGFSLGEA 696 Query: 706 DMLRRAMGKKKPEEMAKQRSVFAEGAE-KNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764 D+LRRAMGKKK + M KQR F +G + +N I + A ++FD++ +FAGYGFNKSHSAAY Sbjct: 697 DILRRAMGKKKEKLMRKQREKFIKGCQAENDIPEDEADELFDIINEFAGYGFNKSHSAAY 756 Query: 765 ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824 +LV+Y+T +LKAHYP EFMAA MT +MDNT+K+ +++E MGL++LPP IN F Sbjct: 757 SLVAYRTAYLKAHYPPEFMAAAMTNEMDNTDKLSKVLEEARSMGLEVLPPSINRSQSRFT 816 Query: 825 VND--DG--EIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLE 880 V DG + +G+ AIK GE I A+I+AR + G F +FDL D +N+R LE Sbjct: 817 VEQGPDGAYRVRFGLAAIKNAGEKAINALIDAREEHGPFDSIFDLTKNVDLGTVNKRTLE 876 Query: 881 KLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYAS 940 L +GA D L HRA LM + A++ + GQ +FG E ++ Sbjct: 877 ALAQAGALDDLEGHRAQLMEIMDKAVRYGQKVQHDRMAGQNSLFGNGDAGTEAMQPGLPD 936 Query: 941 CQPWPEQVVLDGERETLGLYLTGHPINQYLKE------------------IERYVGGVRL 982 + W + L E E LG Y++GHP+++Y E IE+ GG Sbjct: 937 VETWAKSQRLKEEHEVLGFYVSGHPLDEYRAEADAFATAHFGEPDQLEQVIEQAAGG--- 993 Query: 983 KDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLL 1042 RG V T G++ TK G I T++D +G+ E+++F+ LD+ Q L Sbjct: 994 ---DGRNRGPVRTFCGIITEVDRNTTKSGKPIAFATIEDFTGQGEMVIFSSILDRVQPYL 1050 Query: 1043 EKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLR 1102 E D +++ G V G +K+ A+++ + + RE+ + +++ Q+ L R Sbjct: 1051 EVDNVVLAKGNVEVR--GGTVKVLAKDLTPMWKVREQMVSEVILTVDLDQVMPDELQTFR 1108 Query: 1103 QSLEPHRSGTIPVHLYYQRADARARLRFGA-TWRVSPSDRLLNDLRGLIGSEQVELE 1158 Q E G ++ + R + R + + V P+ + + + G + + L+ Sbjct: 1109 QLCE-RTEGNCTLYFDVDAPELRGQERLRSRAYVVEPTAEFMRGAQRIFGPDNIALK 1164 >UniRef50_B2UNA1 DNA polymerase III, alpha subunit n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UNA1_AKKM8 Length = 1174 Score = 754 bits (1948), Expect = 0.0, Method: Compositional matrix adjust. Identities = 444/1122 (39%), Positives = 653/1122 (58%), Gaps = 67/1122 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKF------------ 53 FVHL H++YS++DG L+ + + +GMPA+A+TD NL G ++ Sbjct: 5 FVHLHNHTEYSLLDGAVHIKDLIAECSRMGMPAVAVTDHGNLFGAIELVMETNSLNKSVA 64 Query: 54 -YGAGHGAG-----IKPIVGAD-------FNVQCDLLGD-ELTHLTVLAANNTGYQNLTL 99 + H G +KPI G + +V+ L G + THL +LA N TG+QNL Sbjct: 65 AWNKEHPEGPQKQEVKPIFGCEVYLSPTPISVKKQLPGRRKYTHLLLLAENETGWQNLVK 124 Query: 100 LISKAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYE 159 L+S+++ G+ P +D + L E +EGLI + G + LL +E + + Sbjct: 125 LVSRSHLEGF-YYKPRVDMETLREFHEGLICCTACIAGPLNEWLLNDQPEKAEEALLALK 183 Query: 160 EHF-PDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVA 218 + F D F+EL G +++ L V +A P+VATNDV F+ D D H++ + Sbjct: 184 DIFGDDNIFVELQDHGMEEQKKCLPELVRIARKTNTPIVATNDVHFLRKEDHDMHDVLIC 243 Query: 219 IHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFL 278 I L PKR R YS + Y++S EEM E+F D PEA+ NT++IA+RCNV ++L Sbjct: 244 IGTNEKLASPKRMR-YSTEVYLKSPEEMREVFKDYPEAVENTLKIAERCNVAIKLDSTST 302 Query: 279 ---PQFPTGDMST-EDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQ 334 P+F T D S+ E+YL K +GLEER +ER+ E +RL+ EL +INQ Sbjct: 303 EKYPEFGTPDGSSREEYLRKVCYKGLEERYG------KERVAADKELRDRLDYELGIINQ 356 Query: 335 MGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNP 394 + FP YFLI +FI W+KD+ +PVGPGRGS AGSLVAYA+KIT++DPL F L+FERFLNP Sbjct: 357 LKFPSYFLITADFINWAKDHDIPVGPGRGSAAGSLVAYAMKITNIDPLRFGLIFERFLNP 416 Query: 395 ERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYG 454 ERVS PD D+DFC +R +VI++V YG AVS IIT+GTM AK+V+RDV RV+ Y Sbjct: 417 ERVSPPDIDIDFCQTRRPEVIDYVRQKYGERAVSHIITYGTMGAKSVLRDVARVMDMSYA 476 Query: 455 FVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGG 514 DRISKLI P +TL ++++ +L E+ +DE L A +LEG+ RN G HA G Sbjct: 477 DGDRISKLIETGPKVTLQSSYKSNEELRELIASDEGYAELWGYATRLEGLIRNVGVHAAG 536 Query: 515 VVIAPTKITDFAPLYCDE-EGKHP--VTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEM 571 VVI + + L D+ H V Q D S + GL+K DFLGL+TLT+++ A Sbjct: 537 VVIGDRPLDEHVALTRDDLSDPHAAVVAQCDMSAIYEVGLLKMDFLGLKTLTVMHDA--- 593 Query: 572 INKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDM 631 ++ A+ P + ++PLDD+++ D+L R +T VFQLES GM D +R ED+ Sbjct: 594 --EQYARWRVPEFKLDSVPLDDRETLDLLNRGDTMGVFQLESGGMVDTCRRYGIQKIEDI 651 Query: 632 IALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVM 691 I L+AL+RPG +Q +D I+ K G ++ Y +H L+ V TYG+++YQEQV Sbjct: 652 IDLLALYRPGAMQ--FMDEMIEVKKGLRQVEY-----EHPLLEQVSGETYGVMIYQEQVQ 704 Query: 692 QIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEK-NGINAELAMKIFDLVEK 750 A++L+GYTLGGAD+LRRAMGKK P +MAK+++ F EG K N I+ + A IFD +EK Sbjct: 705 AAAKLLAGYTLGGADLLRRAMGKKDPAKMAKEKAHFVEGCWKTNQIDEKTATAIFDKIEK 764 Query: 751 FAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLK 810 FAGYGFNKSHSA Y +SY T +LKAH+P EF+ +M+ + +N +K+ + E RMG++ Sbjct: 765 FAGYGFNKSHSACYGHISYWTAYLKAHFPVEFLCGLMSNEANN-DKIGVFIQEANRMGIE 823 Query: 811 ILPPDINSGLYHFHVND--DGEIV--YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLC 866 ILPPD+N + F G++ YG+ AIK VGEG ++ ++E R K G F + D+C Sbjct: 824 ILPPDVNKSMLKFTPEKMPSGKLAVRYGLAAIKNVGEGAMQILLEEREKNGEFSSMEDIC 883 Query: 867 ARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGV 926 R D+K +N+++LE LI +GA D R L + AL A Q K +A+GQ +F + Sbjct: 884 NRLDSKSVNKKILESLIRAGALDWTLEPRCVLFERVDLALSGASQVHKDKALGQGSLFDM 943 Query: 927 LAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQY--LKEIERYVGGVRLKD 984 E P ++ + W ++ + E++ LG Y GHP++ + + E+Y + Sbjct: 944 TFEAPRVKDE--PAVPEWSKEQRMGDEKDLLGAYFCGHPLDSMRGVIDAEKYTRIGLIDT 1001 Query: 985 MHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQL--- 1041 + P E + AG+V + ++K G + I TL+D +G +EV+L++D +K Q++ Sbjct: 1002 LEPHELKQKHQIAGMVRSVTPKISKAGRKFAILTLEDFTGSIEVLLWSDVYEKAQEMEGG 1061 Query: 1042 LEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARG 1083 LE + V + DD + + A+ + + + K G Sbjct: 1062 LEPGVFVSVRANIREDDRTSSKSVAAQSIDPLGGKKRKSKSG 1103 >UniRef50_B0S231 DNA polymerase III alpha subunit n=3 Tax=Clostridiales Family XI. Incertae Sedis RepID=B0S231_FINM2 Length = 1161 Score = 754 bits (1946), Expect = 0.0, Method: Compositional matrix adjust. Identities = 431/1185 (36%), Positives = 678/1185 (57%), Gaps = 60/1185 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F HL VH++YS++DG + L+ KA L M A+AITD ++ G VKFY IKPI Sbjct: 5 FTHLHVHTEYSLLDGFSPIEKLLDKAKDLQMKAIAITDHGSMFGTVKFYKECKKRNIKPI 64 Query: 66 VGADF---NVQCDLLGDE---LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRD 119 +G + N + E HL +LA N GY NL ++S Y G+ P +D++ Sbjct: 65 IGCEIYTTNKDHKIKNPENKFYNHLVLLAKNQQGYSNLMKIVSLGYVEGF-YYKPRVDKN 123 Query: 120 WLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEE 179 L + +EG+I LS G+V SL+R + ++ + + ++LEL ++ Sbjct: 124 TLRKYSEGIIALSACLKGEVQESLIRYGYDKAKDVAKELKDIYGEDFYLELQNHSSREDM 183 Query: 180 SYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQY 239 + ++A+ + +V TNDV +I+ D+ H I + + G T+++ + + + Sbjct: 184 VVMENIPKIAKELDIGLVCTNDVHYIEKEDYKIHNILICLQTGKTIEEDNKMSYIPGEFF 243 Query: 240 MRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGD-MSTEDYLVKRAKE 298 +RSEE+M +LF + PEA+ NT +IA+ CNV + G LP F D + YL K + Sbjct: 244 LRSEEQMKDLFKEYPEAIENTKKIAEMCNVELEFGHLHLPYFAIPDGFTNSSYLKKLVFD 303 Query: 299 GLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPV 358 GLE+R A +ERL+ E ER E EL VI +MG+ YFLIV +FI+++K +PV Sbjct: 304 GLEKRFA-----NDERLQ---EAKERCEYELSVIEKMGYVDYFLIVWDFIRFAKSQDIPV 355 Query: 359 GPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHV 418 GPGRGS AGS+++Y L+ITD++PL++DL+FERFLNPERVSMPD D+DFC E+R++VI++V Sbjct: 356 GPGRGSAAGSIISYCLEITDINPLDYDLIFERFLNPERVSMPDIDIDFCYERREEVIDYV 415 Query: 419 ADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAE 478 + YG D V+QI+TFGTMAA+ IRDVGRVL + VD +K +P + + K+ E Sbjct: 416 VNKYGEDKVAQIVTFGTMAARNAIRDVGRVLAMDFKTVDDTAKKVPNLLNINIDKSLEIS 475 Query: 479 PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538 P+ + YE + +VK L+D+AR++EG+ R+ HA GVVI+ I ++ PL +++ + Sbjct: 476 PEFRKAYEENRDVKKLVDVARRVEGMPRHTSTHAAGVVISKLPIMEYVPLAINKDA--VI 533 Query: 539 TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598 TQF+ +++E GL+K DFLGLRTLT+I+ ++ I KN ++ + +D K Sbjct: 534 TQFNMTELEELGLLKMDFLGLRTLTVISDCIKYI----KKNKNIDVNFEDMNENDPKVLS 589 Query: 599 MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658 M ++T +FQ ES+GM++ +K L+P F+D+IA ALFRPGP+ + +I KH Sbjct: 590 MFTVAQTLGIFQFESQGMRNFLKELKPTKFDDLIAANALFRPGPMNE--IPTYIHNKHNE 647 Query: 659 EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718 E DV++ L+ +L+PTYG I+YQEQVMQI Q ++G++LG AD LRRAM KKK + Sbjct: 648 E-----DVEYLSPLLEDILKPTYGTIVYQEQVMQIVQKIAGFSLGEADNLRRAMSKKKMK 702 Query: 719 EMAKQR------------SVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 M R ++ EGA + G+ ++A KI+DL+ FA Y FNKSHSAAY+L Sbjct: 703 VMEDGRKEFIFGKEDENGNILIEGAIRRGVEEDVANKIYDLMIDFAKYAFNKSHSAAYSL 762 Query: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 V+ +T WLK +YP EF+AA++++ M NT ++ ++E R+ ++I PPDIN L F V Sbjct: 763 VAMRTAWLKYYYPVEFLAALISSVMGNTSQISLYIEEARRLEIEISPPDINYSLDKFDVK 822 Query: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCART---DTKKLNRRVLEKLI 883 D+ I+YG+ AIK VG I+ I +RN+ G F+ D R D +N+R +E LI Sbjct: 823 DNS-IIYGLKAIKNVGTNLIDQTIISRNENGKFKSFRDFVERIYAKDKSAINKRSIESLI 881 Query: 884 MSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQP 943 +GAF LG RA LM + + K GQ+++F + E + + Sbjct: 882 KAGAFSSLGETRATLMLQYQSIIDSVQSGLKNNVPGQSNLFDMFESNEENDRDDFTRREE 941 Query: 944 WPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVR--LKDMHPTER---GKVITAAG 998 + + +L E+E LG+YL+ HP+ Y I +Y L+D E+ GK + G Sbjct: 942 FDKSELLRMEKEVLGIYLSDHPLRAYSSIIGQYSNFSTGDLEDDAYNEKNFDGKRVKVVG 1001 Query: 999 LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDD 1058 ++ + TK + +D G +E+++F ++Y ++L +D ILIV G+++ + Sbjct: 1002 IIESINKKFTKNQKIMEFVKFEDLYGTMELIVFPQKYEQYSEILNEDEILIVGGRLNIIE 1061 Query: 1059 FSGGLKMTAREVMDID-----EAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTI 1113 K+ + I E +E+ L + +T + + +L++++ L + G Sbjct: 1062 -GEDPKIIVDSIQSIKSISNVEKQEESETKLFLRIT-KNMPSYILDKVKPIL-LNSKGDT 1118 Query: 1114 PVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSEQVELE 1158 ++Y++ D + G +R+S D +++L L+G E V L+ Sbjct: 1119 QSNIYFE--DKKQNYLLGNEFRISCEDNTIDELVSLLGRENVVLK 1161 >UniRef50_Q3AVK2 DNA polymerase III, alpha subunit n=11 Tax=Cyanobacteria RepID=Q3AVK2_SYNS9 Length = 1172 Score = 753 bits (1944), Expect = 0.0, Method: Compositional matrix adjust. Identities = 440/1171 (37%), Positives = 672/1171 (57%), Gaps = 67/1171 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FV L HSDYS++DG ++ +V++A LGMPA+A+TD + G ++ G +KPI Sbjct: 3 FVPLHNHSDYSLLDGASQLPSMVERAKELGMPAIALTDHGVMYGAIELLKLCKGTDLKPI 62 Query: 66 VGADFNVQCDLLGD------ELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG----PI 115 +G + V + D + HL VLA N GY+NL L S ++ RG G Sbjct: 63 IGNEMYVINGSIDDPQPKKEKRYHLVVLAKNAIGYRNLVKLTSISHLRGMRGRGIFSRAC 122 Query: 116 IDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGR 175 +D+D L +EGLI+ + G++ +++LRG + + +Y++ F + ++LE+ G Sbjct: 123 VDKDLLQRHSEGLIIATACLGGEIPQAILRGRPEVARDVARWYQDVFGEDFYLEIQDHGS 182 Query: 176 PDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYS 235 P++ V++AE + +VATND ++ D +AH+ + + G + D KR R Y+ Sbjct: 183 PEDRIVNSEIVKIAEELDIQLVATNDAHYLTKQDVEAHDALLCVLTGKLISDEKRLR-YT 241 Query: 236 PQQYMRSEEEMCELFAD------IPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTE 289 +Y+++EEEM LF D + +A+ NT ++A++ LG+Y +P+FP D T Sbjct: 242 GTEYIKTEEEMGRLFTDHLDPDVVQKAITNTAKVAEKVEDYDILGKYQMPRFPIPDGHTA 301 Query: 290 -DYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFI 348 YL + +GL +RL D Y +R+ EL+++ QMGFP YFL+V ++I Sbjct: 302 VTYLREVTLQGLRDRLELKSDDPIAE-----NYADRMSHELEIMEQMGFPTYFLVVWDYI 356 Query: 349 QWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCM 408 +++++ +PVGPGRGS AGSLVAYAL IT++DP+ LLFERFLNPER SMPD D DFC+ Sbjct: 357 RFAREQNIPVGPGRGSAAGSLVAYALGITNIDPVSNGLLFERFLNPERKSMPDIDTDFCI 416 Query: 409 EKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIP---- 464 E+R +VI++V + YG D V+QIITF M +KAV++DV RVL PYG DR++KLIP Sbjct: 417 ERRCEVIDYVTERYGDDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKLIPVVRG 476 Query: 465 -PDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKIT 523 P + P+ E Y+ D VK +DMA ++EG + G HA GVVIA + Sbjct: 477 KPAKLKAMIGDESPNPEFREKYQGDPVVKRWVDMAMRIEGTNKTFGVHAAGVVIAADPLD 536 Query: 524 DFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPP 583 PL + +G+ +TQ+ DVE GL+K DFLGL+ LT+I+ LE++ +P Sbjct: 537 QLVPLQRNNDGQ-VITQYFMEDVESMGLLKMDFLGLKNLTMIDKTLELVEVSSGTRIDPD 595 Query: 584 LDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPL 643 +P D +F +L R + +FQLES GM+ +++ L+P ED+ +++AL+RPGPL Sbjct: 596 ----KLPPQDADTFALLARGDLEGIFQLESSGMRQIVRDLKPSSLEDISSILALYRPGPL 651 Query: 644 QSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLG 703 +G++ FI+RKHGRE I + HE L+P+L TYGI++YQEQ+M+IAQ L+GY+LG Sbjct: 652 DAGLIPKFINRKHGREAIDF-----AHEILEPILSETYGIMVYQEQIMRIAQDLAGYSLG 706 Query: 704 GADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAA 763 AD+LRRAMGKKK EM K R +F EGA+K G++ +++ ++FD + FA Y FNKSHS A Sbjct: 707 QADLLRRAMGKKKVSEMQKHRGIFVEGAKKRGVDVKVSDELFDQMVLFAEYCFNKSHSTA 766 Query: 764 YALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHF 823 Y V+YQT +LKAHYP +MAA++T + +KV + C MG++++PPD+N+ L F Sbjct: 767 YGAVTYQTAYLKAHYPVAYMAALLTVNAGAADKVQRYISNCNAMGIEVMPPDLNASLIDF 826 Query: 824 HVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLI 883 N D I++G+ A++ +G+G I +IE+R G FR L DLC R + LNRR LE LI Sbjct: 827 TPNGD-RILFGLSAVRNLGDGAIRRLIESRENDGPFRSLADLCDRLPSSVLNRRGLESLI 885 Query: 884 MSGAFDRLGP--HRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASC 941 GA D + P +RA LM L L A AK GQ ++F ++A E + S Sbjct: 886 HCGAMDAMDPNANRAQLMADLDLLLDWASSRAKDRDSGQGNLFDLMAAPAEDDGPTDLSM 945 Query: 942 QP-------WPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVI 994 P +P L E++ +G YL+ HP+ Q L R + + L + + Sbjct: 946 APKAAPVPDYPPSEKLRLEKDLVGFYLSDHPLKQ-LTPSSRLLAPIGLGSLEEQPDKAKV 1004 Query: 995 TAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKY-QQLLEKDRILIVSGQ 1053 +A ++ R + T++G+R+ I L+D +G E ++F + + L+ + R+L+ +G Sbjct: 1005 SAITMITELRQVTTRKGDRMAILQLEDLTGSCEAVVFPKSYARLADHLMAEARLLVWAGV 1064 Query: 1054 VSFDDFSGGLKMTAREVMDIDEAR--EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSG 1111 D+ R + ID+ R + L +D+ D + ++LR+ L HR Sbjct: 1065 DRRDE---------RVQLIIDDCRAIDDLTLLLVQLPSDQANDIAIQHKLRECLTQHRPE 1115 Query: 1112 ------TIPVHLYYQRADARARLRFGATWRV 1136 +PV D+ +R GA + V Sbjct: 1116 RDELGVKVPVVAEVCLGDSVRYVRLGAQFCV 1146 >UniRef50_B5VUX8 DNA polymerase III, alpha subunit n=2 Tax=Arthrospira RepID=B5VUX8_SPIMA Length = 1219 Score = 752 bits (1942), Expect = 0.0, Method: Compositional matrix adjust. Identities = 429/1099 (39%), Positives = 652/1099 (59%), Gaps = 76/1099 (6%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FV L +HSDYS++DG ++ LV +A LGMPA+A+TD + G ++ GIKPI Sbjct: 3 FVGLHIHSDYSLLDGASQLPQLVSRAVELGMPAIALTDHGVMYGAIELIKICRSKGIKPI 62 Query: 66 VG-------ADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG----P 114 +G AD VQ G + H VLA N GY+NL L + ++ +G+ G P Sbjct: 63 IGNEMYVLNADVTVQQR--GIKKYHQVVLAKNTQGYKNLVKLTTISHLKGFQGKGIFARP 120 Query: 115 IIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTG 174 I+++ L E +EGLI+ S G+V +++L+ + + V +Y+ F D Y+LE+ G Sbjct: 121 CINKELLEEYHEGLIVTSACLGGEVPQAILQRRMDIARQTVEWYKRVFGDDYYLEIQDHG 180 Query: 175 RPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNY 234 P++ A V+LA + +VATND FI +D +AH+ + I+ + + R R Y Sbjct: 181 SPEDRIVNVALVQLAREFEVKIVATNDSHFISCNDVEAHDALLCINTQKLITEDNRLR-Y 239 Query: 235 SPQQYMRSEEEMCELFAD------IPEALANTVEIAKRCN-VTVRLGEYFLPQFPTGDMS 287 S +Y++S EEM +LF D I EA+ANT+E+A++ T LGE +P +P Sbjct: 240 SGTEYLKSAEEMMQLFRDHLPDEVIKEAIANTLEVAEKVEPYTGILGEPRIPDYPIPPNH 299 Query: 288 TED-YLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVME 346 T D YL + A EGL++RL + + R + +P Y ERLE EL+++ +MGF YFL+V + Sbjct: 300 TADTYLEEIAWEGLKKRL-----NAQGRSEIKPVYRERLEYELKMMQKMGFATYFLVVWD 354 Query: 347 FIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 406 +I+ ++DN +PVGPGRGS AGSLVAYAL+IT++DP+ LLFERFLNPER SMPD D DF Sbjct: 355 YIKHARDNHIPVGPGRGSAAGSLVAYALQITNIDPVHHGLLFERFLNPERKSMPDIDTDF 414 Query: 407 CMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIP-- 464 C+++RD++I++V YG + V+QIITF M +KAV++DV RVLG PY D+++K+IP Sbjct: 415 CIDRRDEMIKYVTSKYGEEKVAQIITFNRMTSKAVLKDVARVLGIPYSKSDQMAKMIPVS 474 Query: 465 ---PDPGMTLAKAFEAEPQLPEIYEAD---------EEVKAL-----IDMARKLEGVTRN 507 P + P+ + Y+ D EEV + +DMA ++EG + Sbjct: 475 RGKPTKLKVMISDQSPSPEFKQAYDNDFVPIKNDAGEEVGTIAVRQWVDMAIRIEGTNKT 534 Query: 508 AGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINW 567 G HA GVVI+ + + PL + +G +TQ+ D+E GL+K DFLGL+ LTII Sbjct: 535 FGVHAAGVVISKQPLDEIVPLQRNNDGS-VITQYFMEDIEALGLLKMDFLGLKNLTIIQR 593 Query: 568 ALEMINKRRAKNGEP---------PLDIAA------IPLDDKKSFDMLQRSETTAVFQLE 612 L I++ + +P +DI A +P D K++ +L+R + +FQLE Sbjct: 594 TLNYISQNHHLDIDPYNLAADERKAMDILAKGAVKKMPEDVAKTYKILERGDLEGLFQLE 653 Query: 613 SRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHES 672 S GM+ ++K L+P ED+ +++AL+RPGPL +G++ FI+RKH RE I Y +H+ Sbjct: 654 SSGMRQIVKDLKPSSIEDISSILALYRPGPLDAGLIPQFINRKHKREPIRY-----EHKL 708 Query: 673 LKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAE 732 L+P+L TYGI++YQEQ+M++AQ L+GY+LG AD+LRRAMGKKK EM K R F +GA Sbjct: 709 LEPILNETYGILVYQEQIMKMAQDLAGYSLGQADLLRRAMGKKKASEMQKHRETFIDGAT 768 Query: 733 KNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMD 792 +NG+ +A +FD + KFA Y FNKSHS AY ++YQT +LKA+YP E+MAA++T + Sbjct: 769 RNGVPQNIAEHLFDQMVKFAEYCFNKSHSTAYGYITYQTAYLKANYPTEYMAALLTENSG 828 Query: 793 NTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEA 852 NT+KV ++ C +G+ ++PPDIN F + IV+G+ AIK VG+G IE ++ Sbjct: 829 NTDKVRAYIESCKHLGIDVVPPDINRSNVDF-TPIENRIVFGLSAIKNVGDGAIEHLLSV 887 Query: 853 RNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQH 912 R +GG FR L DLC R + + +N R LE LI SGAFD L +R + L + A Sbjct: 888 REEGGPFRSLADLCDRINLQMVNSRALESLIKSGAFDSLHANRKQSIEYLNIVIPWAQDR 947 Query: 913 AKAEAIGQADMFGVL------AEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPI 966 AK IGQ ++F ++ + P E ++ + + L E+E LG Y++ HP+ Sbjct: 948 AKNREIGQTNLFDLVNYATTESNSPSG-EPAFPKGDDYAPKDKLQFEKELLGFYVSDHPL 1006 Query: 967 NQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRL 1026 L + V L + + + A +++ + +TK+G+R+ L+D +G++ Sbjct: 1007 KSLL-DSGILPDNVTLDKLPEQKSKAAVKVAVILINIKPHLTKKGDRMAFLLLEDLTGQI 1065 Query: 1027 EVMLFTDALDKYQQLLEKD 1045 + ++F + + QQ L+++ Sbjct: 1066 DAVVFPSSYEAVQQELKEN 1084 >UniRef50_B9L5T8 DNA polymerase III alpha subunit n=1 Tax=Nautilia profundicola AmH RepID=B9L5T8_NAUPA Length = 1132 Score = 751 bits (1940), Expect = 0.0, Method: Compositional matrix adjust. Identities = 436/1118 (38%), Positives = 674/1118 (60%), Gaps = 68/1118 (6%) Query: 9 LRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA 68 +HSDYS++ + L KKA G ALAIT+ N+ ++FY + IKPI+G+ Sbjct: 4 FHIHSDYSLLHSTIRIKDLTKKAKEYGFNALAITELDNMFSAIEFYESCRANEIKPIIGS 63 Query: 69 DFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEGL 128 D +V D + L ++A N TGY NL L S +Y P + + +++ EGL Sbjct: 64 DVSVIRD---GNIHRLILIAKNKTGYDNLMYLSSISYLYNMRGDKPYLPFEEIVKNKEGL 120 Query: 129 ILLSGGRMGDVG--------RSLLRGNSAL--VDECVAFYEEHFPDRYFLELIRTGRPDE 178 + + G ++L+G + E + Y ++ + Y LE+ R + +E Sbjct: 121 CFILPILESETGFHLNIFNENNILKGAAGYEKAKEILEIYRQNLNEVY-LEITRDSK-EE 178 Query: 179 ESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDD-PKRPRNYSPQ 237 ++L+ G P++A++++ F++ D+ + I + DD +RP+ + Sbjct: 179 RLIEDDLIKLSNETGTPLLASSNIFFLNKLDYIYKDALECIENNKQFDDLHRRPK--VKE 236 Query: 238 QYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFP-TGDMSTED------ 290 Y RS+EE E+F D+PEA+ NT ++A+ N+ + LG P F T D + E+ Sbjct: 237 NYFRSKEEFEEIFKDLPEAVENTDKLAESINLEIPLGNPTPPTFKFTKDYAAEEGLDIDN 296 Query: 291 ---YLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347 Y + KEGLEERL + + E EY +RL+ E+ +I +M FPGY LIV +F Sbjct: 297 DVEYFEYKCKEGLEERLKHIPENLHE------EYRKRLDYEIDIIKRMKFPGYMLIVWDF 350 Query: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 ++ +K +PVGPGRGS AG+LVAY+L+IT++DPL + LLFERFLNPERVSMPD D+DFC Sbjct: 351 VREAKKRKIPVGPGRGSAAGALVAYSLQITNIDPLRYGLLFERFLNPERVSMPDIDMDFC 410 Query: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467 E+R ++IE+V + YG+ V+Q+ITFG++ AK V+RDV R+ G Y DR KLIP Sbjct: 411 QERRGEIIEYVREKYGKVNVAQVITFGSLLAKGVLRDVARIFGIDYSEADRFVKLIPDQL 470 Query: 468 GMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAP 527 G+TL KA E EP++ EI E D L LEG+ RN G HA GVVI+ ++ +P Sbjct: 471 GITLEKAKELEPKIVEITEEDPLYNRLYSFGEHLEGLKRNTGMHAAGVVISDEELWKKSP 530 Query: 528 LY-CDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586 LY DE VTQ+ + +E L+KFDFLGL+TLT+I+ A++ N + KN + +D+ Sbjct: 531 LYRQDEHDDTIVTQYSLNYLEPVDLIKFDFLGLKTLTVIDRAVK--NVKFNKNEDINIDL 588 Query: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 + LDD K F+++Q T +FQ+ES GM+DL KRL+P FED+IA++AL+RPGP+ SG Sbjct: 589 --LTLDDPKVFELIQSGHTLGLFQIESDGMQDLAKRLKPTNFEDIIAMLALYRPGPMDSG 646 Query: 647 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 M+D++IDRKHGR+ +SY +++ E LKP+LEPTYG+I+YQEQVMQI Q + G++LG +D Sbjct: 647 MLDDYIDRKHGRKPVSYFFDEFE-EVLKPILEPTYGVIVYQEQVMQIVQAIGGFSLGESD 705 Query: 707 MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 ++RRAMGKKK + M K FA+ A++ G + + A +F+L+EKFAGYGFNKSHSAAYA+ Sbjct: 706 IIRRAMGKKKFDLMKKYAEEFAQRAQQRGFSYDNAKSLFELIEKFAGYGFNKSHSAAYAM 765 Query: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 ++YQT +LK +YP EF++A++T + +NT+K+ ++E +G+++LPP++N F Sbjct: 766 ITYQTAYLKTYYPTEFLSALLTYEAENTDKIAKYIEEAKVLGIEVLPPNVNKSNAEFTPI 825 Query: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 +D +I++G+ AIKGVG IE+I+ R + L D + DT K+N++VLE+LI +G Sbjct: 826 ED-KILFGLSAIKGVGSKAIESIVANRP----YESLEDFILKVDTSKVNKKVLEQLIKAG 880 Query: 887 AFDRLGPHRAALMNSLGDALKAADQ-HAKAEAIGQADMFGVLAEEPEQIEQ--SYASCQP 943 A D G R A+++ + + L+ + K AI EE E+I++ + Sbjct: 881 AMDDFGLSRKAMLSRVEEILEFKKRVEEKKNAINHEHSLFADMEENEEIDEHLDIPNTVE 940 Query: 944 WPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMH---PTERGKVITAAGLV 1000 + + +L+ E +TLG Y++ HP++ Y R+K ++ +E ++I+ L Sbjct: 941 FDIKTLLEYEYQTLGFYVSAHPLDPYKD---------RMKGINYNLSSEVEEIISQEALF 991 Query: 1001 V----AARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSF 1056 V A +V ++K+GN+ I TL D G+++VM+F L+K + D + + QV Sbjct: 992 VGKIDAMKVRISKKGNKFAIATLMDFHGKIDVMIFERDLEKLNE-FNLDEPIAIKAQV-- 1048 Query: 1057 DDFSGGLKMTAREVMDIDEAR-EKYARGLAISLTDRQI 1093 D L++T R++M ++EA+ EK A I++ RQI Sbjct: 1049 DKVGEFLRVTCRKLMTLEEAKEEKGAVKDEITVIQRQI 1086 >UniRef50_A5GTL9 DNA polymerase III alpha subunit n=20 Tax=cellular organisms RepID=A5GTL9_SYNR3 Length = 1179 Score = 751 bits (1938), Expect = 0.0, Method: Compositional matrix adjust. Identities = 454/1168 (38%), Positives = 682/1168 (58%), Gaps = 57/1168 (4%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FV L HSDYS++DG + +V++A LGMPA+A+TD + G ++ AGIKPI Sbjct: 7 FVPLHNHSDYSLLDGATQLPAMVQRAVDLGMPAVALTDHGVMYGAIELLKLCSKAGIKPI 66 Query: 66 VGADFNVQCDLLGD------ELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG----PI 115 +G + V + D HL VLA NN GY+NL L S ++ RG G Sbjct: 67 IGNEMYVVNGSIDDPQPKKERRYHLVVLAKNNVGYRNLVKLTSISHLRGMRGRGIFARAC 126 Query: 116 IDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGR 175 ID+ L + +EGLI+ + G++ +++LRG + + ++Y + D ++LE+ G Sbjct: 127 IDKHLLQQYSEGLIVATACLGGEIPQAILRGRMDVARQVASWYRDLLGDDFYLEIQDHGS 186 Query: 176 PDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYS 235 P++ + L+ G+ ++ATND ++ D +AH+ + + G L D KR R Y+ Sbjct: 187 PEDRIVNTGLLTLSRELGIQLIATNDAHYLSRDDVEAHDALLCVLTGKLLSDEKRLR-YT 245 Query: 236 PQQYMRSEEEMCELFAD------IPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTE 289 +Y++S EEM LF D + +AL NT+ +A++ LG Y +P+FP + T Sbjct: 246 GTEYIKSREEMERLFVDHLPAEVVQQALDNTMSVAEKVEDYDILGRYQMPRFPIPEGHTP 305 Query: 290 -DYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFI 348 YL + ++GL +RL + L Y ER+ EL+++ QMGFP YFL+V ++I Sbjct: 306 VSYLHEVTEQGLRQRLQLDADSSIDEL-----YGERMRHELKIMEQMGFPTYFLVVWDYI 360 Query: 349 QWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCM 408 ++++DNG+PVGPGRGS AGSLVAYAL IT++DP+ LLFERFLNPER SMPD D DFC+ Sbjct: 361 RFARDNGIPVGPGRGSAAGSLVAYALGITNIDPVSNGLLFERFLNPERKSMPDIDTDFCI 420 Query: 409 EKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIP---- 464 +R +VI++V + YG D V+QIITF M +KAV++DV RVL PYG DR++KLIP Sbjct: 421 ARRSEVIDYVTERYGDDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKLIPVVRG 480 Query: 465 -PDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKIT 523 P + EP+ + YE+D +VK +DMAR++EG + G HA GVVIA + Sbjct: 481 KPAKLAQMISEDSPEPEFRQKYESDPQVKRWVDMARRIEGTNKTFGVHAAGVVIAADPLD 540 Query: 524 DFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPP 583 + PL + +G+ +TQ+ DVE GL+K DFLGL+ LT+I LE+++ A++G+ P Sbjct: 541 ELVPLQRNNDGQ-VITQYFMEDVESMGLLKMDFLGLKNLTMIEKTLELVS---AEHGDRP 596 Query: 584 LDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPL 643 D +P DD +++ +L R + +FQLES GM+ +++ L+P ED+ +++AL+RPGPL Sbjct: 597 -DPDQLPADDPETYQLLARGDLEGIFQLESTGMRQIVRDLKPSSLEDISSILALYRPGPL 655 Query: 644 QSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLG 703 +G++ FI+RKHGRE I + D + L+P+L+ TYGI++YQEQ+M+IAQ L+GY+LG Sbjct: 656 DAGLIPKFINRKHGREAIEFADAK-----LQPILQETYGIMVYQEQIMRIAQDLAGYSLG 710 Query: 704 GADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAA 763 AD+LRRAMGKKK EM K R +F EGA + G++A++A ++FD + FA Y FNKSHS A Sbjct: 711 EADLLRRAMGKKKVSEMQKHRGIFVEGASQRGVDAKVADELFDQMVLFAEYCFNKSHSTA 770 Query: 764 YALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDIN-SGLYH 822 Y V+YQT +LKAHYP +MAA++T + TEKV + MG+ +LPPD+N SG+ Sbjct: 771 YGAVTYQTAYLKAHYPVAYMAALLTVNAGVTEKVQRYIANSNAMGIAVLPPDVNRSGIDF 830 Query: 823 FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCAR-TDTKKLNRRVLEK 881 V I++G+ A++ +G+G I A+I +R G F L +LC R +LNRR LE Sbjct: 831 TPVGQ--RILFGLSAVRNLGDGAIHALIASRQSDGPFTSLAELCDRMAGIGQLNRRSLES 888 Query: 882 LIMSGAFDRLGP--HRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSY- 938 LI SGA D L P +RA LM L L A A+ A GQ ++ +L E S Sbjct: 889 LIHSGALDALEPDGNRAQLMADLDLLLDWATARARDRASGQGNLLDLLGGGSEAEAASAT 948 Query: 939 -------ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERG 991 AS + L E+E +G YL+ HP+ Q L++ R + V L + Sbjct: 949 PASAPKAASVPDYAPTEKLRLEKELVGFYLSDHPLKQ-LQDTRRLLMPVGLGSLSEQSDR 1007 Query: 992 KVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVS 1051 + ++ +V RV+ T++G+R+ I ++D +G E ++F + L D L++ Sbjct: 1008 QRVSTLVMVPEMRVVTTRKGDRMAILQIEDLTGSAEAVVFPKTYARLSDHLMVDARLLLW 1067 Query: 1052 GQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQS-LEPHRS 1110 GQV D +++ +V ID+ R D + QL L+Q ++P Sbjct: 1068 GQV--DRRDDRVQLIVDDVSLIDQLDLVVVRLDGPQAADITVQHQLRECLQQHRIDPEIL 1125 Query: 1111 GT-IPVHLYYQRADARARLRFGATWRVS 1137 G+ +PV Q A+ R +R G + V+ Sbjct: 1126 GSRVPVVAEVQAANQRCFVRLGHQFCVN 1153 >UniRef50_C6JJK2 DNA-directed DNA polymerase III alpha subunit n=5 Tax=Fusobacterium RepID=C6JJK2_FUSVA Length = 1138 Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/1174 (36%), Positives = 692/1174 (58%), Gaps = 61/1174 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL +H++YS++DG+ K + + AL M A+AITD NL G+++FY GIKPI Sbjct: 5 FVHLHLHTEYSLLDGVGKIDDYLDRTKALNMQAIAITDHGNLFGVLEFYKKAIKKGIKPI 64 Query: 66 VGADFNV-QCDLLGDE--LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLI 122 +G + V + +L E + HL +LA NN GYQNL + S++Y +G+ P ID+++L Sbjct: 65 IGLEAYVSEFSMLEKEGRIFHLVLLAENNKGYQNLLKISSESYIKGF-YYKPRIDKEFLK 123 Query: 123 ELNEGLILLSGGRMGDVGRSLLRGNSA-LVDECVAFYEEHF-PDRYFLELIRTGRPDEES 180 +EG+I LS G++ R +L S VDE V Y + F D +++E+ G + + Sbjct: 124 MHSEGIIALSACMQGEIPRRILDNESEEKVDEIVNEYVDIFGKDNFYIEVQANGVKGQTA 183 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 LA+ L +VATND +++ + +I + + G + D KR R + + ++ Sbjct: 184 LNEKLYNLAQKHQLKMVATNDTHYVNEGEHTLQDILICVQTGAKVADEKRMRIETDELFL 243 Query: 241 RSEEEMCE-LFADIPEALANTVEIAKRCNVTVRLGEYFLPQF--PTGDMSTEDYLVKRAK 297 +S E++ + L A EA+ NT+EIA+RCNV + G++ P++ P+ + E++L K Sbjct: 244 KSREQIIDGLGAKYLEAVNNTIEIAERCNVNIEFGKFKFPEYEIPSCVKTIEEFLRKLVY 303 Query: 298 EGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVP 357 GL +R +P ER+E EL VI +MG+ YF++V +FI ++K N +P Sbjct: 304 FGLSKR----YPH-----GLTISVLERVEYELSVIEKMGYAAYFVVVWDFIDYAKRNRIP 354 Query: 358 VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEH 417 +GPGRGS AGSLVAYAL+IT+LDPL+++L+FERFLNPER+SMPD D+D C E+R +VIE+ Sbjct: 355 IGPGRGSAAGSLVAYALRITELDPLDYNLIFERFLNPERISMPDIDIDICQERRQEVIEY 414 Query: 418 VADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEA 477 V YG D V+QIITFGTM A+A IRDVGRV+ P VD I+KL+P + T+ + Sbjct: 415 VIRKYGEDKVAQIITFGTMKARAAIRDVGRVMDTPLSKVDSIAKLVPFNA--TIQQTLNN 472 Query: 478 EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHP 537 + +Y D E++ +ID++ +LE R+A HA G+VI +TD PLY D + K Sbjct: 473 VEEFKNMYLNDPEIQKVIDISARLENKVRHASIHAAGIVITKDPLTDTVPLYSDNKNKVV 532 Query: 538 VTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSF 597 TQ+ ++E GL+K DFLGLR LT + ++ I + ++ ++++ IPL+ KK + Sbjct: 533 STQYQMKELEDLGLLKMDFLGLRNLTNLQRTIDYIKEDLGED----IELSEIPLNSKKVY 588 Query: 598 DMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHG 657 +ML R +T+ VFQ+ES+G++ ++ +L+PD FED+IAL+AL+RPGPL SGMVD+FI+ K+G Sbjct: 589 EMLSRGDTSGVFQMESQGIRKILLKLKPDRFEDIIALLALYRPGPLGSGMVDDFINGKNG 648 Query: 658 REEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKP 717 EI YP H SL+ L+ TYG+ILYQEQVM+IA +++ Y+LG AD+LRRAMGKK Sbjct: 649 TSEIKYP-----HPSLELTLKETYGVILYQEQVMKIANIMANYSLGEADLLRRAMGKKNI 703 Query: 718 EEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAH 777 + M + R F E + NG E A+++F+L++KFAGYGFNKSHSAAYAL++Y T + KA+ Sbjct: 704 QIMEENREKFVERSMANGYTKEKAIEMFELIDKFAGYGFNKSHSAAYALIAYWTAYFKAY 763 Query: 778 YPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGA 837 Y + A++MT++M + E + +++ LK+ PD+N F V+ +G I++ + A Sbjct: 764 YMKHYYASLMTSEMSHVEDIAFYMEDAKVHNLKLHLPDVNRASPKFIVDKEG-IIFSLAA 822 Query: 838 IKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAA 897 IK VGEG I+E N+ G ++ D RT LN++ LE LI++GA D L +R Sbjct: 823 IKNVGEGVSGKILEECNENGKYKNFEDFVVRTRKHGLNKKALESLILAGALDGLPGNRRQ 882 Query: 898 LMNSLGDALKAADQHAKAEAIGQADMFG---------VLAEEPEQIEQSYASCQPWPEQV 948 S+ L A + K + I Q ++FG L + PE + + Sbjct: 883 KFESVDKILDYATRKIKEDEIQQMNLFGEAKSSLGVFTLPQIPE-----------YSLEE 931 Query: 949 VLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVT 1008 +L E+E LG Y + HP++ Y + IE Y R+ ++ + ++ G++ + +VT Sbjct: 932 LLAREKEYLGFYFSAHPLDNYRRLIEVYRLS-RIAELKEEKNVQIFRTCGILREIKKIVT 990 Query: 1009 KR-GNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGG--LKM 1065 K+ G + + L+D ++ ++F + + + +I+ + G V D F G K+ Sbjct: 991 KKTGQIMCLFELEDYYDKINCIVFPRDYAENAHIFMEGKIVYIEGSVQTDYFKGAETKKL 1050 Query: 1066 TAREVMDIDE-AREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADA 1124 + + +D+ R+K + +A L + D+ +RL++ + + T L + Sbjct: 1051 IVKNIKFLDDIVRDK--KFVAYILLKEEDKDK-FSRLKKIILSYPGET---KLSFAIKTK 1104 Query: 1125 RARLRFGATWRVSPSDRLLNDLRGLIGSEQVELE 1158 + ++++PS ++++ LIG +++ ++ Sbjct: 1105 TVKEIRTTKYKIAPSRLFIDEIIDLIGIDKLTIK 1138 >UniRef50_C1A6B9 DNA polymerase III alpha subunit n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A6B9_GEMAT Length = 1165 Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust. Identities = 461/1189 (38%), Positives = 672/1189 (56%), Gaps = 68/1189 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL HS+YS++DG + L+K+A MPALAITD N+ +F AGIKPI Sbjct: 3 FVHLHCHSEYSLLDGANRIDDLIKRAQHFEMPALAITDHGNMHAAWEFQEKARKAGIKPI 62 Query: 66 VGADFNVQCDLLGDE------------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 +G + V GD HL +LA + GY+NL L S Y G+ Sbjct: 63 LGMEAYVAP---GDRRQRGRPAPGVKPYYHLVLLARDIVGYRNLVKLTSLGYTEGF-YTK 118 Query: 114 PIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRT 173 P IDR+ L + +EGLI+ S G+V L+ E A+Y E F RY LE ++ Sbjct: 119 PRIDRELLAQYSEGLIVSSACLAGEVASHLMEDRVDQAREAAAWYAELFKGRYHLE-VQA 177 Query: 174 GRPDEESYLHAAV-ELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 + ++ L+A + LA+ LPVVATND F+ D DAH++ + I G +D R + Sbjct: 178 HTSEGQAILNAKILSLADELSLPVVATNDAHFLKHEDHDAHDVLLCIGLGKDRNDRDRMK 237 Query: 233 NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFP--TGDMSTED 290 Y Y ++ +E+ F + L NT+ IA +V +Y++P FP G + D Sbjct: 238 -YDDGLYFKAPDEIRTFFPGREDVLTNTLAIADAVDVQF-AKKYYVPSFPLPEGVATEND 295 Query: 291 YLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQW 350 LV+ A +G +ER P ERL+ EL VI + G+ GYFLI +FI+ Sbjct: 296 MLVQIATDGAKERYGDPLP---------ANVQERLDYELGVITKTGYAGYFLITADFIKA 346 Query: 351 SKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEK 410 ++D G+PVGPGRGS AGSLVAYA +ITD+ PLEFDLLFERFLNPERVSMPD DVDFC E+ Sbjct: 347 ARDRGIPVGPGRGSAAGSLVAYATRITDVCPLEFDLLFERFLNPERVSMPDVDVDFCFER 406 Query: 411 RDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIP--PDPG 468 R +VIE+V YG+D+V QI+TFGTM ++A I+DVGR LG D ++KLIP P+ Sbjct: 407 RGEVIEYVRQKYGKDSVGQIVTFGTMKSRAAIKDVGRTLGFTPAETDALAKLIPNAPNFS 466 Query: 469 MTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPL 528 +T+ +A E P++ Y+ DE + L+D A KLEG++R+ G HA GVVIAP + +F P+ Sbjct: 467 LTVKEAIEQVPEVKAFYKNDERYRQLLDFAVKLEGLSRHTGVHAAGVVIAPGPLDEFVPI 526 Query: 529 YCDEEGKHP---------VTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKN 579 C + K VTQ+D + +E AG++K DFLGL TLT+I L I +R K+ Sbjct: 527 -CTQASKGAGGDGDERVIVTQYDMTALEKAGMLKMDFLGLTTLTVITDTLRNIKERLGKD 585 Query: 580 GEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFR 639 + + D+K++ +L+ T VFQ ES D++KR++ D F+D++A AL R Sbjct: 586 ----VVLEERGFTDEKTYQVLRAGRTGGVFQFESPLATDVLKRMRCDRFDDLVASNALLR 641 Query: 640 PGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSG 699 PGPL +GM + +I RK G E Y L+P+L TYG+I YQEQVM+IAQVL+G Sbjct: 642 PGPLDAGMHNVYIRRKRGEEPTVY-----ALPELEPILSNTYGVITYQEQVMRIAQVLAG 696 Query: 700 YTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKS 759 +L AD+LR+A+GKK E + K+ F E A G + ++ ++ +E F YGFNKS Sbjct: 697 ISLAEADVLRKAVGKKDAELIKKELGKFTEKAIARGYSKKIIEELAGQIETFGRYGFNKS 756 Query: 760 HSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSG 819 HS AY++V+Y T +LK HYPAEFMAA++++++ TE+V+ + E MG+++L PD+N Sbjct: 757 HSVAYSVVAYHTAYLKTHYPAEFMAALLSSNIGKTEEVIKYIAEAREMGIEVLAPDVNES 816 Query: 820 LYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVL 879 + F V D I +G+GAI+ VG+G I++++ AR +G F L DLC R D + N+RV Sbjct: 817 GWRFTVIGDKRIRFGLGAIRNVGKGAIDSLLAARTEGA-FPTLHDLCGRVDLRLCNKRVF 875 Query: 880 EKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFG-VLAEEPEQIEQSY 938 E L+ +GA D LG HRA L+ +L A+ A + GQ +FG ++ + P + Sbjct: 876 EALVAAGACDTLGGHRAQLLGALDHAISEASLQQEEAERGQGSLFGDLMGDAPGNGGGNN 935 Query: 939 ASCQ------PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGK 992 A+ Q W E L E+E LG Y++GHP+ + E E + K T + Sbjct: 936 AAPQMLPNIAMWSESERLQREKELLGFYISGHPLEPHRTECELFATSTVAK--LGTWTAE 993 Query: 993 VITAAGLVVAARVMVTKR-GNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVS 1051 +T +V A R ++KR G T++D SG EV++F +A + + D L++ Sbjct: 994 PVTIGVVVTAIRKQISKRTGAEFARLTVEDFSGSSEVLVFPEAWGVIAERVRPDVPLLLK 1053 Query: 1052 GQVSFDDFS-GGLKMTAREVMDIDEAREKYARGLAISL-TDRQIDDQLLNRLRQSLEPHR 1109 G S D G EV E R +AI L + +++ +R +E H Sbjct: 1054 GGYSRKDQDVEGATFIVNEVTRFAELRASGDVAVAIDLGVSLDLSPAMMDDVRAKVESH- 1112 Query: 1110 SGTIPVHLYYQRADARARLRF-GATWRVSPSDRLLNDLRGLIGSEQVEL 1157 G+ P+ + + + + +RF + RV+ S +L+DLR L+G+++V L Sbjct: 1113 EGSAPLEVRWLDGNGKV-VRFRSKSLRVTASPAILSDLRALLGADRVRL 1160 >UniRef50_C4Z382 DNA polymerase III subunit alpha n=1 Tax=Eubacterium eligens ATCC 27750 RepID=C4Z382_EUBE2 Length = 1188 Score = 748 bits (1931), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/1109 (38%), Positives = 637/1109 (57%), Gaps = 73/1109 (6%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F HL VH++YS++DG +K + K+A LGM +LAITD + G+++FY A AGIKP+ Sbjct: 3 FTHLHVHTEYSLLDGSSKIKEITKRAKELGMDSLAITDHGVMYGVIEFYEAAKKAGIKPV 62 Query: 66 VGAD--------FNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIID 117 +G + F+ D+ HL +LA NNTGYQNL ++SK + G+ P +D Sbjct: 63 LGCEVYVAPGSRFDKGAGQSEDKYNHLVLLAENNTGYQNLMKIVSKGFTEGF-YYKPRVD 121 Query: 118 RDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRTGRP 176 ++ L E +EG+I S G+V R L RG + ++ F +FLEL G Sbjct: 122 KEVLREYHEGIIATSACLAGEVQRYLSRGMYETARDAALELQDIFGKGNFFLELQDHGIA 181 Query: 177 DEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSP 236 ++ + + G+ +V TNDV + + D DAH+I + I G L D R R Sbjct: 182 EQHYVNPQLMRMHNETGIELVCTNDVHYTYADDVDAHDILLCIQTGKKLSDENRMRYEGG 241 Query: 237 QQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTED---YLV 293 Q Y++SEEEM ELF PEA+ NT +IA+RCNV + G LP F + ++ YL Sbjct: 242 QFYLKSEEEMAELFKYAPEAVENTHKIAERCNVEIEFGVTKLPAFDVPEAYGKNSWVYLN 301 Query: 294 KRAKEGLEERL-----------------AFLFPDEEERLKRRPEYD----ERLETELQVI 332 EGL++R A + D ++ + +R E +RL EL VI Sbjct: 302 ALCYEGLKKRYPDKTADICIEDIIEQAKASIVADRKDVVIKRAEDSNDIFQRLSYELSVI 361 Query: 333 NQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFL 392 MG+ YFLIV ++I ++K + +PVGPGRGS AGSLV+Y L IT LDP++++L+FERFL Sbjct: 362 YSMGYVDYFLIVWDYINYAKTHDIPVGPGRGSAAGSLVSYCLGITTLDPVKYNLVFERFL 421 Query: 393 NPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHP 452 NPERVSMPD DVDF E R +VI++V + YG++ V QIITFGTMAA+AVI+DVGRV+ P Sbjct: 422 NPERVSMPDIDVDFAPEGRQKVIDYVIEKYGKECVCQIITFGTMAARAVIKDVGRVMDLP 481 Query: 453 YGFVDRISKLIPPDPGMTLAKAFEAE--------PQLPEIYEADEEVKALIDMARKLEGV 504 Y VD I+K+IP G+T+ A + + +YEADE V+ LID A++LEG+ Sbjct: 482 YAMVDNIAKMIPQKVGVTIDSAMNGDADRDIKPNAEFKALYEADETVRDLIDKAKRLEGL 541 Query: 505 TRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTI 564 R+A HA GV+I+ + ++ P+ + VTQF+ +E+ GL+KFDFLGLR LT+ Sbjct: 542 PRHASVHASGVLISQKDVGEYVPVAVGADNV-KVTQFEGPTLEHLGLLKFDFLGLRNLTV 600 Query: 565 INWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQ 624 I ++ + +P + IP +DK F+ + + + +FQLES GMK+ +K L+ Sbjct: 601 IQQT-----EKCEQQIDPAFSVDNIPYNDKAVFECISQGKCAGIFQLESGGMKNFMKELK 655 Query: 625 PDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGII 684 PDC ED+IA ++L+RPGP+ + +I K I+Y Q L+P+LEPTYG + Sbjct: 656 PDCLEDLIAGISLYRPGPMD--FIPQYIKGKENAGNITYECPQ-----LEPILEPTYGCM 708 Query: 685 LYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAE--------KNGI 736 +YQEQVMQI + L+GY+ GG+D +RRAM KKK + M ++R F G E KNGI Sbjct: 709 VYQEQVMQIVRDLAGYSWGGSDNVRRAMAKKKLDVMEQERQNFVYGNEANGVPGCIKNGI 768 Query: 737 NAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEK 796 + + A KI+D + FA Y FNKSH+A YA+V+YQT +LK H+P ++MA ++++ D T K Sbjct: 769 SEQTANKIYDEMMDFAKYAFNKSHAACYAVVAYQTAYLKVHFPVQYMAWLISSVTDKTSK 828 Query: 797 VVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKG 856 V + MG+ ILP D+N + F V + I +G A+K +G I AIIE R Sbjct: 829 VAEYILAAREMGISILPVDVNKSVADFGV-EGKNIRFGFNAVKSMGRPTITAIIEERTNN 887 Query: 857 GYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAE 916 G F + D R +N+R +E LI++GAFD G R +MN + +A + K Sbjct: 888 GDFHSMQDFITRM-AGVINKRTVEHLILAGAFDTFGNTRRGMMNVYERMIDSAVKQNKDA 946 Query: 917 AIGQADMFGVLAEEPEQ-IEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIER 975 GQ +F +EE +Q +E Q + ++ +L+ E+E LG+Y+TGHP+++Y E+ Sbjct: 947 ISGQMSLFDFASEEDKQSLEMRVPDIQEFEKEDLLEREKEVLGVYVTGHPLDEYTGMWEK 1006 Query: 976 YVGGVRLKDMHPTERGKVI-------TAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEV 1028 ++ + E G+ T GL+ +V+ T G ++ T++D G +EV Sbjct: 1007 HISARSTDFLIDEETGQAKLMNGSKQTIGGLISNIKVITTGSGQQMAYLTIEDFVGSVEV 1066 Query: 1029 MLFTDALDKYQQLLEKDRILIVSGQVSFD 1057 ++F +KY++ + + ++G++ D Sbjct: 1067 IMFPRNYEKYKRFFDTTNKVFITGRIQAD 1095 >UniRef50_B1GZ26 DNA polymerase III subunit alpha n=2 Tax=cellular organisms RepID=B1GZ26_UNCTG Length = 1174 Score = 748 bits (1930), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/1200 (36%), Positives = 692/1200 (57%), Gaps = 78/1200 (6%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAAL--------GMPALAITDFTNLCGLVKFYGAG 57 FVHL H++YS++DG + K L MPALAITD N+ G ++FY A Sbjct: 5 FVHLHNHTEYSLLDGACRLIDDKGKPGELFNLIAKEYKMPALAITDHGNMYGAMEFYLAA 64 Query: 58 HGAGIKPIVGADFNVQCDLLGDELT------------HLTVLAANNTGYQNLTLLISKAY 105 +GIKPI+G + V D+ HLT+LA + GYQNL ++S + Sbjct: 65 KQSGIKPIIGCEIYVAPKSRFDKKNINRITEDNVNYHHLTLLAKDFEGYQNLMRIVSAGF 124 Query: 106 QRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PD 164 G+ P +D++ L + GLI LSG G+V +L++GN Y + F D Sbjct: 125 TEGF-YYKPRVDKEVLKKYRCGLIALSGCLAGEVASALVKGNKKKAQNAAIEYRDIFDKD 183 Query: 165 RYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFT 224 +++E++ G ++ + + +EL+++ +P+VATND F+ D + H+I + I G Sbjct: 184 NFYIEIMDNGLETQKKIIPSLIELSKSAAIPLVATNDCHFLKKEDAEVHDILLCIGTGKM 243 Query: 225 LDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTG 284 L++ KR S Y RS E+M + F+ +PEA+ NT+EIA++ N+ + + LPQFP Sbjct: 244 LNETKRLHFDSDLFYYRSAEDMIKTFSSVPEAIKNTLEIAEKTNLEINTDKLLLPQFPIP 303 Query: 285 D--MSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFL 342 S +YL + GL R + +PE++ERL+ EL VIN+MGF YFL Sbjct: 304 KEYKSDSEYLETLCRRGLAARYDTI----------KPEHEERLKHELSVINKMGFASYFL 353 Query: 343 IVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDF 402 IV +FI+++KD+ +PVGPGRGSG+G++VAY L ITD+ PL++ LLFERFLNP+R SMPD Sbjct: 354 IVSDFIKYAKDHRIPVGPGRGSGSGAMVAYTLGITDICPLKYGLLFERFLNPDRRSMPDL 413 Query: 403 DVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL 462 D+DF RD+VI++V YG + +QIITFG+M ++ VI+DV RV+G + I+KL Sbjct: 414 DIDFADYGRDEVIQYVRRKYGEEKCAQIITFGSMQSRLVIKDVARVMGFTPAESNNIAKL 473 Query: 463 IPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 IP + ++A+A +A L ++ +ADE++ LI ++KLEG+ R+ G HA G+VIA +I Sbjct: 474 IPQNA--SIAEALQASTDLSKLVKADEKIAKLIAASQKLEGLKRHTGVHAAGMVIANKEI 531 Query: 523 TDFAPLYCDEEGKHPV--TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNG 580 T ++PL +G + TQ+D + GL+K DFLGL+TLTII+ ++ I R KN Sbjct: 532 TSYSPL---AKGSKDIVTTQYDGGVLPQLGLLKIDFLGLKTLTIIDDCVKFI---REKN- 584 Query: 581 EPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRP 640 P ++ IPLDDKK++++L ++T +FQLES GM+DLIK+L+P +D+IAL+AL+RP Sbjct: 585 -PSFNLDNIPLDDKKTYELLGEAKTMGIFQLESIGMRDLIKKLKPSNIDDIIALIALYRP 643 Query: 641 GPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGY 700 GP+ SGM+DNF++RKHGR +I Y H + +L+ TYG+ILYQEQVM+++ L+G+ Sbjct: 644 GPMGSGMLDNFVNRKHGRTKIVY-----DHPLQESILKDTYGVILYQEQVMKMSVALAGF 698 Query: 701 TLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSH 760 T G AD LR+AM KK PE + KQR F G ++ G+N +++ KIF+ + F GYGFNKSH Sbjct: 699 TPGEADSLRKAMSKKIPEVIEKQREKFVRGTKEKGVNKKISEKIFNNIVAFGGYGFNKSH 758 Query: 761 SAAYALVSYQTLWLKAHYPAEFMAAVMT------ADMDNTE-KVVGLVDECWRMGLKILP 813 SAAY ++SY+T +LKA+YP E++ A+ A +N E K+V + + +K+LP Sbjct: 759 SAAYGIISYKTAYLKANYPLEYITALCNNEIGRPATKNNEESKLVAYLGDALAFDIKVLP 818 Query: 814 PDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGY---FRELFDLCARTD 870 PD+ F +D I +G+ A+K VG+G ++I ++R + G F++ D R D Sbjct: 819 PDVQYSDGKFKT-EDKNIRFGMLAVKNVGKGVTDSIEQSRIENGQLKSFKDWVDFLQRID 877 Query: 871 TKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKA-ADQHAKAEAIGQADMFGVLAE 929 K +N++ LE LI +G FD G + + L + + AD+ AK + ++ + G L + Sbjct: 878 LKSINKKALESLIKAGVFDSFGKDKFTIRGRLIQNIDSYADKAAKVKQYRES-LQGFLFD 936 Query: 930 EPEQIEQSYASCQ---PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGV--RLKD 984 + I S Q P L+ E+E LG Y++GHP+ K+I Y +L Sbjct: 937 NVKTITDDILSLQEVKPLEPLEALNFEKEVLGFYISGHPLTHRKKDIIAYSNYRLDKLPQ 996 Query: 985 MHPTERGKVITAAGLVVAARVMV-TKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLE 1043 + K + AG++V+ + + T R ++D G + +LF +K+ L Sbjct: 997 LKENADRKTVRIAGMIVSVKKLTSTTRKEPYARFKIEDLHGNVNALLFPKNFEKFGGYLT 1056 Query: 1044 KDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARG---LAISLTDRQIDDQLLNR 1100 + I+++ G ++ + G L+M ++M IDEA++K + I + + L Sbjct: 1057 LNNIVVIKGWLT--NMQGQLEMITEDIMTIDEAKKKSPSKCDEIRIKFSAASFNVALEEE 1114 Query: 1101 LRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIG-SEQVELEF 1159 L++ + H +G V+L + + + SD +ND+ +IG + VEL + Sbjct: 1115 LKKIFKIH-TGKTKVYLILEDS-LHGNFSIETEYLSDCSDNFINDVETIIGVKDSVELHY 1172 >UniRef50_O67125 DNA polymerase III subunit alpha n=4 Tax=Aquificaceae RepID=DPO3A_AQUAE Length = 1161 Score = 746 bits (1926), Expect = 0.0, Method: Compositional matrix adjust. Identities = 434/1154 (37%), Positives = 661/1154 (57%), Gaps = 92/1154 (7%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL +H+ +S++DG K LVKKA G A+ ++D NL G KFY A GIKPI Sbjct: 5 FVHLHLHTQFSLLDGAIKIDELVKKAKEYGYKAVGMSDHGNLFGSYKFYKALKAEGIKPI 64 Query: 66 VGAD--------FNVQCDLLGDELT-----HLTVLAANNTGYQNLTLLISKAYQRGYGAA 112 +G + F+ + D +T HL ++A ++ G +NL L + AY+ G+ Sbjct: 65 IGMEAYFTTGSRFDRKTKTSEDNITDKYNHHLILIAKDDKGLKNLMKLSTLAYKEGF-YY 123 Query: 113 GPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172 P ID + L + EGLI L+ G +E V +++ F D +LEL Sbjct: 124 KPRIDYELLEKYGEGLIALTACLKGVPTYYASINEVKKAEEWVKKFKDIFGDDLYLELQA 183 Query: 173 TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDD----- 227 P++E +E+A+ + ++AT D +++ D AH + +A+ T+ + Sbjct: 184 NNIPEQEVANRNLIEIAKKYDVKLIATQDAHYLNPEDRYAHTVLMALQMKKTIHELSSGN 243 Query: 228 ---PKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE---YFLPQF 281 +++P +YM + E F +AL NT+E+ ++ + + E Y LP++ Sbjct: 244 FKCSNEDLHFAPPEYMWKKFEGK--FEGWEKALLNTLEVMEKTADSFEIFENSTYLLPKY 301 Query: 282 PTG-DMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGY 340 D + E+YL + A +GL +R+ E + K EY ERLE EL+VIN+MGF GY Sbjct: 302 DVPPDKTLEEYLRELAYKGLRQRI------ERGQAKDTKEYWERLEYELEVINKMGFAGY 355 Query: 341 FLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMP 400 FLIV +FI W+K N +PVGPGRGS GSLVAYA+ ITD+DP++ LFERFLNPERVSMP Sbjct: 356 FLIVQDFINWAKKNDIPVGPGRGSAGGSLVAYAIGITDVDPIKHGFLFERFLNPERVSMP 415 Query: 401 DFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIS 460 D DVDFC + R++VIE+V + YG D V+QIIT+ M AK +RDV R +G PY D+++ Sbjct: 416 DIDVDFCQDNREKVIEYVRNKYGHDNVAQIITYNVMKAKQTLRDVARAMGLPYSTADKLA 475 Query: 461 KLIPPDPGMTLAKAFEAEPQLP-----------------------EIYEADEEVKALIDM 497 KLIP + E + P +I E E+K L++ Sbjct: 476 KLIPQGDVQGTWLSLEEMYKTPVEELLQKYGEHRTDIEDNVKKFRQICEESPEIKQLVET 535 Query: 498 ARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFL 557 A KLEG+TR+ HA GVVIAP +++ PLY D+EG+ TQ+D +E GL+K DFL Sbjct: 536 ALKLEGLTRHTSLHAAGVVIAPKPLSELVPLYYDKEGE-VATQYDMVQLEELGLLKMDFL 594 Query: 558 GLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMK 617 GL+TLT + E+I +R + ++ +PLDD K + +LQ +TT VFQLESRGMK Sbjct: 595 GLKTLTELKLMKELIKERHGVD----INFLELPLDDPKVYKLLQEGKTTGVFQLESRGMK 650 Query: 618 DLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVL 677 +L+K+L+PD F+D++A++AL+RPGPL+SG+VD +I RKHG+E + YP L+PVL Sbjct: 651 ELLKKLKPDSFDDIVAVLALYRPGPLKSGLVDTYIKRKHGKEPVEYP-----FPELEPVL 705 Query: 678 EPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGIN 737 + TYG+I+YQEQVM+++Q+LSG+T G AD LR+A+GKKK + MA+ + F +GA + G Sbjct: 706 KETYGVIVYQEQVMKMSQILSGFTPGEADTLRKAIGKKKADLMAQMKDKFIQGAVERGYP 765 Query: 738 AELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKV 797 E K+++ +EKFA Y FNKSHS AY +SY T ++KAHYPAEF A +T + N K Sbjct: 766 EEKIRKLWEDIEKFASYSFNKSHSVAYGYISYWTAYVKAHYPAEFFAVKLTTE-KNDNKF 824 Query: 798 VGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGG 857 + L+ + G +ILPPDIN F + + I +G+ IKGVGE + I+EAR K Sbjct: 825 LNLIKDAKLFGFEILPPDINKSDVGFTIEGENRIRFGLARIKGVGEETAKIIVEARKKYK 884 Query: 858 YFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEA 917 F+ L D +T +K+N++V+E L+ +GAFD R L+ + ++ KA Sbjct: 885 QFKGLADFINKTKNRKINKKVVEALVKAGAFDFTKKKRKELLAKVANS-------EKALM 937 Query: 918 IGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIE-RY 976 Q +FG EE E+++ L E+E LG Y++GHP++ Y K ++ RY Sbjct: 938 ATQNSLFGAPKEEVEELDP-------------LKLEKEVLGFYISGHPLDNYEKLLKNRY 984 Query: 977 VGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALD 1036 ++D+ ++ G++ +V TK G+ + + L D++G +E ++F + Sbjct: 985 TP---IEDLEEWDKESEAVLTGVITELKVKKTKNGDYMAVFNLVDKTGLIECVVFPGVYE 1041 Query: 1037 KYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQ 1096 + ++L+E+DR+++V G + D + +K +EV +E ++ L I L Q + Sbjct: 1042 EAKELIEEDRVVVVKGFLDEDLETENVKFVVKEVFSPEEFAKEMRNTLYIFLKREQALNG 1101 Query: 1097 LLNRLRQSLEPHRS 1110 + +L+ +E +R+ Sbjct: 1102 VAEKLKGIIENNRT 1115 >UniRef50_A0YQD0 DNA polymerase III subunit alpha n=1 Tax=Lyngbya sp. PCC 8106 RepID=A0YQD0_9CYAN Length = 1206 Score = 744 bits (1920), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/1111 (38%), Positives = 651/1111 (58%), Gaps = 79/1111 (7%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FV L +HSDYS++DG ++ L+++A L MPA+A+TD + G ++ GIKPI Sbjct: 3 FVGLHIHSDYSLLDGASQLPQLIERAVELKMPAIAVTDHGVMYGAIELIKQCRSKGIKPI 62 Query: 66 VGAD-FNVQCDLLGDE----LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG----PII 116 +G + + + D+ + H VLA N GY+NL L + ++ +G+ G P I Sbjct: 63 IGNEMYVINADVTQQQGRLKKYHQVVLAKNTKGYKNLVKLTTISHLQGFQGKGIFARPCI 122 Query: 117 DRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRP 176 +++ L + +EGLI+ S G++ +++L+G S + + +Y++ F + Y++E+ G P Sbjct: 123 NKELLKQYHEGLIVTSACLGGELPQAILQGRSDVARKVAKWYQDVFGEDYYIEIQDHGSP 182 Query: 177 DEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSP 236 ++ V++A + ++ATND FI D +AH+ + I+ + + KR R YS Sbjct: 183 EDRIVNVELVKIAREFDIKIIATNDSHFISCYDVEAHDALLCINTQKLITEDKRMR-YSG 241 Query: 237 QQYMRSEEEMCELFAD------IPEALANTVEIAKRCN-VTVRLGEYFLPQFPTGDMSTE 289 +Y++S EEM +LF D I EA+ANT+E++++ T LGE +P +P T Sbjct: 242 TEYLKSAEEMAQLFRDHLPDDVIREAIANTIEVSEKIEPYTGILGESRIPDYPIPPNHTS 301 Query: 290 D-YLVKRAKEGLEERLAFLFPDEEERLKRR----PEYDERLETELQVINQMGFPGYFLIV 344 D YL + +GL ERL ++ +++ R P Y ERLE EL+++ +MGF YFL+V Sbjct: 302 DTYLEEVTWKGLIERL-----QDQIKIQTRSEIPPVYRERLEYELKMMQKMGFSTYFLVV 356 Query: 345 MEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDV 404 ++I++++D+ +PVGPGRGS AGSLVAY+L IT++DP+ LLFERFLNPER SMPD D Sbjct: 357 WDYIKYARDHQIPVGPGRGSAAGSLVAYSLGITNIDPVHHGLLFERFLNPERKSMPDIDT 416 Query: 405 DFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIP 464 DFC+ +RD++I +V + YG D V+QIITF M +KAV++DV RVLG PY D+++KLIP Sbjct: 417 DFCIARRDEMIRYVTNQYGEDKVAQIITFNRMTSKAVLKDVARVLGIPYSKSDQMAKLIP 476 Query: 465 -----PDPGMTLAKAFEAEPQLPEIYEADE--------------EVKALIDMARKLEGVT 505 P + P+ YE ++ V+ IDMA ++EG Sbjct: 477 VSRGKPAKLKVMISDDTPSPEFKSAYETEDVPIKNDLGNEVGTIPVRQWIDMAIRIEGTN 536 Query: 506 RNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTII 565 + G HA GVVI+ + + PL + +G +TQ+ D+E GL+K DFLGL+ LTII Sbjct: 537 KTFGVHAAGVVISKQPLDEIVPLQRNNDGA-VITQYFMEDIEALGLLKMDFLGLKNLTII 595 Query: 566 NWALEMINKRRAKNGEP---PLD------------IAAIPLDDKKSFDMLQRSETTAVFQ 610 +E+I + P P D I +P D +K++ +L+R + VFQ Sbjct: 596 QRVVELIEENHHFKMIPDQLPFDERKACQILAKGKIKKLPEDIQKTYKLLERGDLEGVFQ 655 Query: 611 LESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQH 670 LES GM+ +++ L+P ED+ +++AL+RPGPL +G++ FIDRKH R I Y +H Sbjct: 656 LESSGMRQIVRDLKPSNIEDISSILALYRPGPLDAGLIPKFIDRKHKRVPIEY-----EH 710 Query: 671 ESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEG 730 L+ +L+ TYGI++YQEQ+M++AQ L+GY+LG AD+LRRAMGKKK EM KQR F +G Sbjct: 711 PLLESILQETYGILVYQEQIMKMAQDLAGYSLGQADLLRRAMGKKKLSEMQKQREAFIDG 770 Query: 731 AEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTAD 790 + KNG++ ++A +FD + FA Y FNKSHS AY V+YQT +LKA+YP E+MAA++T + Sbjct: 771 STKNGVSKQIAEHLFDQMLAFAEYCFNKSHSMAYGFVTYQTAYLKANYPVEYMAALLTEN 830 Query: 791 MDNTEKVVGLVDECWR-MGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAI 849 DNT+KV +D C R + +K++ PD+N F DGEI++G+ AIK VGE IE I Sbjct: 831 SDNTDKVQKYIDSCQRSLKIKVVSPDVNHSNVDF-TPSDGEIIFGLSAIKNVGETAIENI 889 Query: 850 IEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAA 909 + AR +GG F +L D C+R +N R LE LI GA D L +R + L + A Sbjct: 890 LAARKEGGKFSDLPDFCSRVSLHIVNSRALESLIKCGALDSLHQNRKQAIEYLNFLIPWA 949 Query: 910 DQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQP------WPEQVVLDGERETLGLYLTG 963 AK IGQ+ +F +L + + A P PE+ L E+E LG Y++ Sbjct: 950 QGKAKDREIGQSSIFDLLGDTTTKSTNEGAPKPPKTDDFSTPEK--LQFEKELLGFYVSE 1007 Query: 964 HPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRS 1023 HP+ +K + L+D+ +GK + ++V + VTK+G + ++D S Sbjct: 1008 HPLQSVIKAYP-VEDAITLQDL-AEHKGKKVKVFLVIVEVKRHVTKKGETMAFLKVEDMS 1065 Query: 1024 GRLEVMLFTDALDKYQQLLEKDRILIVSGQV 1054 G+ E ++F + LE+++ +V+G+V Sbjct: 1066 GQAEAIVFPRTFQEILTSLEENKSFLVTGKV 1096 >UniRef50_C8PHM9 DNA polymerase III, alpha subunit n=1 Tax=Campylobacter gracilis RM3268 RepID=C8PHM9_9PROT Length = 1381 Score = 743 bits (1919), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/1089 (38%), Positives = 648/1089 (59%), Gaps = 69/1089 (6%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 + HL +H++YS++DG K + L + + G A AITD N+ G + FY GIKPI Sbjct: 4 YTHLHLHTEYSLLDGANKVSELAELLQSRGTKACAITDHGNMFGAIDFYQTMKKHGIKPI 63 Query: 66 VGADFNVQC-DLLGD----ELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 +G + + D +GD + HL +LA N TGY+NL L S+A+ G+ P I++ Sbjct: 64 IGIETYLHNHDDIGDKSDRQRYHLILLAKNETGYKNLMYLSSRAFLDGFYYY-PRINKKI 122 Query: 121 LIELNEGLILLSGGRMGDVG-------RSLLRGNSAL--VDECVAFYEEHFPDRYFLELI 171 L E +EGLI S G+V R+L RG + Y+E F + ++LE++ Sbjct: 123 LKEHSEGLICSSACLAGEVEFHLNRSERNLKRGAGGYEAAKKAALEYKEIFGEDFYLEIM 182 Query: 172 RTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRP 231 R G ++ + + L+ G+ ++ATND + AH++ I G T++D R Sbjct: 183 RHGIGEQLNVDKDLIRLSREIGVKIIATNDAHYSRKDRAKAHDVYQCISMGKTINDGDRL 242 Query: 232 RNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEY-FLPQFPTGDMSTE- 289 ++ + Y++S+EEM LFADIPE + NT EI ++CN+ E + P P + E Sbjct: 243 KHVVSEFYVKSDEEMRRLFADIPEVIENTAEIVQKCNLKFAFDEKDYAPTPPNFKFTIEY 302 Query: 290 --------------------DYLVKR-AKEGLEERLAFLFPDEEERLKRRPEYDERLETE 328 D+L +EGL+ERL F+ P + E Y ERLE E Sbjct: 303 AARLGLSLPQPDERYSFANDDFLFDHLCREGLKERLKFIDPAKHEI------YRERLEKE 356 Query: 329 LQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLF 388 L +I M F GY +IV +FI W+KD+ +PVGPGRGS AGS+ AYAL+ITDLDP+ ++LLF Sbjct: 357 LAIIKNMHFSGYMVIVQDFINWAKDHDIPVGPGRGSAAGSICAYALRITDLDPIPYNLLF 416 Query: 389 ERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRV 448 ERFLNP R+SMPD DVDFC +R +VI++V D YG+ V+Q+ TFG + A+ VIRDV RV Sbjct: 417 ERFLNPSRISMPDIDVDFCQARRGEVIDYVIDQYGKFNVAQVATFGKLLARGVIRDVARV 476 Query: 449 LGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNA 508 P D+++KLIP G+TL +A++AEP+L E +AD + + + A LEG+ RNA Sbjct: 477 CDMPLSQADKMAKLIPDKLGITLTQAYDAEPKLKEFIDADPIAQQVWEFALGLEGLNRNA 536 Query: 509 GKHAGGVVIAPTKITDFAPLYCDEEGKHP--VTQFDKSDVEYAGLVKFDFLGLRTLTIIN 566 G HA GVVI+ + + APL+ ++G+ VTQ+ K+ +E L+KFDFLGL+ L +I+ Sbjct: 537 GMHAAGVVISNEPLWNKAPLFKQDKGEDARLVTQYTKNYLEDVDLIKFDFLGLKNLDVID 596 Query: 567 WALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPD 626 A +++ +R ++ + I +D+K+++ +Q T +FQ+E GM+DL L+PD Sbjct: 597 NAAKLVKRRYGRD----IVWEEIDFNDRKTYETIQSGNTLGIFQIEGAGMQDLAMNLRPD 652 Query: 627 CFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILY 686 FED+IA+++L+RPGP+ ++ +FI KHG + SY LK +LEPTYGII+Y Sbjct: 653 RFEDIIAMISLYRPGPMD--LIPDFIRIKHGELKASYI-----FPELKEILEPTYGIIVY 705 Query: 687 QEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFD 746 QEQVMQI Q + G++LG AD++RRAMGKK +++A R + GA++ G + A ++FD Sbjct: 706 QEQVMQIVQKVGGFSLGDADLVRRAMGKKDEKKLAHMREQYLSGAKELGFDVAKADELFD 765 Query: 747 LVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWR 806 L+ KFA YGFNKSH+AAY+++++QT +LK +YPAEFMAA++T++ NT+K+ +DE R Sbjct: 766 LIMKFASYGFNKSHAAAYSMITFQTAYLKTYYPAEFMAALLTSEEGNTDKISKYIDEASR 825 Query: 807 MGLKILPPDINSGLYHFHVNDD------GEIVYGIGAIKGVGEGPIEAIIEARNKGGYFR 860 +G+ +LPP IN L F V DD I+YG+GAIKGVG IE I+E +++ F+ Sbjct: 826 LGIGLLPPSINQSLRGFSVVDDENSKSGTSIIYGLGAIKGVGAAAIENILELQSEAK-FQ 884 Query: 861 ELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQ 920 + D +R D ++N++V+E LI +GA D LG R A++ ++ + L+ + + + Sbjct: 885 SIDDFASRVDNFRVNKKVIESLIYAGAMDCLGKSRLAMIQNMENILEVMKKITEIKKDAA 944 Query: 921 ADMFGVLAEEPEQIEQSYASC-QPWPEQVVLDGERETLGLYLTGHPINQYLKEIE--RYV 977 + +FG + + S+ + +P+ +L E++T+G+YL+GHP++ Y +EIE Y Sbjct: 945 SSLFGEDEDMTSGMSVSFVDTDKEFPQGEILKFEQQTVGVYLSGHPLDDYKEEIEGIDYT 1004 Query: 978 GGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDK 1037 ++ + + G + +TK G ++GI + D G E+ +F +AL Sbjct: 1005 LSSAFSEIEGD--SAEVLSVGRIEDLSTRMTKTGKKMGILNVLDLHGSFELAVFDNALKA 1062 Query: 1038 YQQLLEKDR 1046 + L ++R Sbjct: 1063 IENLSPQER 1071 >UniRef50_C7H0A9 DNA polymerase III, subunit alpha n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H0A9_9FIRM Length = 1182 Score = 742 bits (1916), Expect = 0.0, Method: Compositional matrix adjust. Identities = 440/1210 (36%), Positives = 675/1210 (55%), Gaps = 95/1210 (7%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F HL VHS+YS++DG A+ LV +AA GM +LA+TD + G+V+FY GIKPI Sbjct: 3 FTHLHVHSEYSLLDGAARIRDLVAEAARFGMKSLALTDHGTMFGVVEFYKECKKQGIKPI 62 Query: 66 VGADFNV---QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLI 122 +G + V ++ HL +L N GY+NL L+S A + G+ P ID + + Sbjct: 63 IGCEVYVARGSIEVQEKSPNHLILLVKNEEGYKNLIKLVSIANKEGF-YYKPRIDENLME 121 Query: 123 ELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPD-RYFLELIRTGRPDEESY 181 ++GLI LS G + +L GN + Y + + + ++LE+ G E+ Sbjct: 122 RFSKGLIALSACPAGRIPELILEGNYEEAKKTAIKYRDIYGEGNFYLEIQNHGLDKEQII 181 Query: 182 LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241 +++E G+ +VATND ++ D H++ + I G L D R + S Y++ Sbjct: 182 NRELTKMSEETGIKLVATNDSHYVKKEDAKMHDVLLCIKTGARLSDEVRMKFPSDDFYLK 241 Query: 242 SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF--PTGDMSTEDYLVKRAKEG 299 SE+EM LF +A+ NT+E+A++CN LP F P G+ + E YL K EG Sbjct: 242 SEDEMRMLFPGQTKAIENTLEVAEKCNFDFDFNSQHLPDFEVPEGE-TKEGYLRKLCCEG 300 Query: 300 LEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVG 359 LE+R + E ERLE EL I+ MG+ YFLIV +FI ++K G+PVG Sbjct: 301 LEKRHKNV----------TNELRERLEFELDTIHNMGYDEYFLIVHDFIHYAKTRGIPVG 350 Query: 360 PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVA 419 PGRGS AGSLV+Y L IT +DP++++LLFERFLNPERVSMPD D+DFC ++R +VI++V Sbjct: 351 PGRGSAAGSLVSYCLDITCVDPIKYNLLFERFLNPERVSMPDIDIDFCKDRRQEVIDYVI 410 Query: 420 DMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEP 479 D YG D V+QI+TFGT+ AKA IRDVGR++ YG VDR++K +PP G+TL+ A + + Sbjct: 411 DKYGDDRVAQIVTFGTLKAKAAIRDVGRIMNAGYGEVDRLAKAVPPGLGVTLSDALK-DS 469 Query: 480 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 539 E+YE E+ K ++DMA +LEG+ RNAG HA GVVI+ I + P+Y ++G T Sbjct: 470 NFKELYEEGEDSKEVVDMALQLEGMVRNAGTHAAGVVISKESIDSYVPIYKSDKG--FCT 527 Query: 540 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 599 Q + +E GL+K DFLGL+ LT+I M+ +N ++ DD K +++ Sbjct: 528 QMTMTTIEELGLLKMDFLGLKNLTVIENCKNMV----YRNHGIKINFDDSNYDDSKVYEL 583 Query: 600 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 659 + T +FQLES GM + +K L+PD ED+IA ++L+RPGP+ S DN+I K Sbjct: 584 ISSGNTEGIFQLESEGMTEFMKDLKPDSIEDIIAGISLYRPGPMDSK--DNYIFNKR--- 638 Query: 660 EISYPD-VQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718 +PD ++++H +LKP+L TYG ++YQEQVMQI + L+GY+ G AD++RRAM KKK + Sbjct: 639 ---HPDRIKYKHPALKPILSLTYGCLVYQEQVMQIVRELAGYSYGRADLVRRAMSKKKAD 695 Query: 719 EMAKQRSVF------------------------------AEGAEKNGINAELAMKIFDLV 748 EMAK+R +F EG K GI E+ +IFD + Sbjct: 696 EMAKEREIFLFGTENEYWAEENEKSCKISDAPVTDDEEVVEGCVKRGIPKEVGNEIFDEM 755 Query: 749 EKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMG 808 E FA Y FNKSH+AAYA++SYQT +LKAHYP EFMA+++ + N K+ + M Sbjct: 756 ESFASYAFNKSHAAAYAVISYQTAYLKAHYPVEFMASLLASASGNDGKMARYIKNARDMN 815 Query: 809 LKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEAR-NKGGYFRELFDLCA 867 ++ILPPD+N F + EI++G+ +K VG+ + I++ R +KG + ++ Sbjct: 816 IEILPPDVNKSGVTFEARGN-EILFGLADVKNVGDNAADHIVKVRESKGKAYDNMYTFVQ 874 Query: 868 RTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVL 927 D K+N+ VLE LI +GAF AA ++ DAL+ + K Q +F Sbjct: 875 DMDISKVNKSVLENLIRAGAFRDFEGTMAANLSIYNDALEQKKKSNKGITADQMSLFEEG 934 Query: 928 AEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHP 987 E EQ Q + + + + E+E LG+YLT HP+ +Y + +E + V L +++P Sbjct: 935 EIEGEQFSQKIPNIPEFKDAQKMKFEKEALGMYLTTHPMKEYEQYLEGRITDV-LGNINP 993 Query: 988 T----------------ERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 G+ + AGL+ + +VTK+G + L+D +GR+E+++F Sbjct: 994 EADSDDEEDVASKSSAYREGQRVKLAGLITTVKTIVTKKGEMMAFANLEDMTGRMEMVIF 1053 Query: 1032 TDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISL-TD 1090 +KY+++L++D ++I G++S D G++ I + EK + + L Sbjct: 1054 PSIYEKYRRILDEDMVIIAEGKLSSRD---GVEYNLLVSDIILPSEEKTPEDMVVKLRLL 1110 Query: 1091 RQIDDQLLNR---LRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLR 1147 +++ + N+ +SLE G + LY + + +++ R++P L +DL Sbjct: 1111 EKLNSEEANKKIEFLKSLESSEPGAMEFLLYIEDKVYKMKMQ---GVRLTP--ELESDLE 1165 Query: 1148 GLIGSEQVEL 1157 + G E V++ Sbjct: 1166 VIFGKENVKV 1175 >UniRef50_B9KZ27 DNA polymerase III alpha subunit n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KZ27_THERP Length = 1166 Score = 742 bits (1915), Expect = 0.0, Method: Compositional matrix adjust. Identities = 439/1077 (40%), Positives = 630/1077 (58%), Gaps = 50/1077 (4%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M+ P + HL +H+++S++DGL + V +A LGM LAI+D L G++ +Y A Sbjct: 1 MARP-YAHLHLHTEFSLLDGLGRIPEYVGRARELGMEHLAISDHGVLYGIIDWYKAVRAE 59 Query: 61 GIKPIVGADFNVQCDLLGDE---LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIID 117 G+ PI+G + + + D + HL +LA N GY+NL L ++A G+ P ID Sbjct: 60 GLHPIIGMEAYLAPRSVQDRDKTIYHLLLLAENERGYKNLLKLATRASLEGF-YYKPRID 118 Query: 118 RDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRTGRP 176 L E EGLI S G + +LL GN E E F PDR+++EL G P Sbjct: 119 MAMLAEHAEGLIATSACLGGPIANNLLNGNHEAAREWGIRLRELFGPDRFYIELQDHGLP 178 Query: 177 DEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSP 236 ++ V LA LP+V TNDV ++ D ++ + I TLDDPKR R S Sbjct: 179 EQRRVNSELVALARELDLPLVVTNDVHYLRQEDASVQDLLICIQTNSTLDDPKRMRVQSD 238 Query: 237 QQYMRSEEEMCELF-ADIPEALANTVEIAKRCNVTVRLGEYFLPQ--FPTGDMSTEDYLV 293 Q Y +S EEM LF A++PEAL NTV IA+RC V + G LP P G M+ +DYL Sbjct: 239 QLYFKSAEEMWRLFGAEVPEALLNTVRIAERCEVELEFGRLHLPDPGIPAG-MTADDYLA 297 Query: 294 KRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKD 353 EG+ +R +P+ E ++RR EY EL VI Q GF Y LIV +F ++++ Sbjct: 298 ALCWEGIRQR----YPELTEEVRRRLEY------ELDVIRQTGFSSYMLIVRDFAEFARQ 347 Query: 354 NGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQ 413 G+ G RGS A S+V YAL ITD+DPL L+FERFLNPER MPD D+DF ++R + Sbjct: 348 RGILYGV-RGSAAASIVLYALGITDVDPLANRLVFERFLNPERREMPDIDMDFADDRRHE 406 Query: 414 VIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAK 473 VIE+VA YG + V+QIITFGTM AKA IRDVGR +G P+ VDRI++LIP MTL + Sbjct: 407 VIEYVARKYGAEHVAQIITFGTMGAKAAIRDVGRAMGWPHAEVDRIARLIPSGVNMTLER 466 Query: 474 AFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCD-- 531 A E P+L +YE D + LID ARKLEG+ R+AG HA GVVI+ + + + PL Sbjct: 467 ALEESPELRHLYETDPRSRELIDNARKLEGIARHAGTHAAGVVISASPLVEHVPLQRPAR 526 Query: 532 -EEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIP 590 EEG P TQF V GL+K DFLGL LTI+ A+E+I + R + +D+ IP Sbjct: 527 AEEGALPTTQFPMETVAEIGLLKMDFLGLANLTILANAVELIRETRGET----IDLKQIP 582 Query: 591 LDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDN 650 +DD+K+F++L +T VFQLES GM+ I+ L+P ++ A++AL+RPGP+Q + Sbjct: 583 MDDRKTFELLAEGQTFGVFQLESAGMRRYIRELRPTSVAELAAMIALYRPGPMQH--IPR 640 Query: 651 FIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRR 710 + KHG E I YP H L +L+ TYG+I+YQ+QV+ IA+ +GYTLG AD++R+ Sbjct: 641 YCRAKHGLEPIQYP-----HPDLAEILDETYGVIVYQDQVLLIARKFAGYTLGEADIMRK 695 Query: 711 AMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQ 770 AMGKK PE+M +R F GA G + E A +IF+L+E FAGY FNK+H+ YA+VSYQ Sbjct: 696 AMGKKIPEKMRAERERFIAGAIAKGYSEEDAERIFNLIEPFAGYAFNKAHATCYAVVSYQ 755 Query: 771 TLWLKAHYPAEFMAAVM----TADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 T +LKA+YP E+M A++ + +++ + EC ++G+ +LPPDIN F V Sbjct: 756 TAYLKANYPVEYMTAILRNAPSHPSGTVKRIAAALAECQKLGISVLPPDINHSEATFTVE 815 Query: 827 D--DGE--IVYGIGAIKGVGEGPIEAIIEARNK--GGYFRELFDLCARTDTKKLNRRVLE 880 DG I +G+ +K VGE +EAI+ ARN+ G FR C D +NRR +E Sbjct: 816 QLPDGSRAIRFGLAMVKHVGEAAVEAILAARNEQPGKVFRSFEHFCETIDWSVVNRRAVE 875 Query: 881 KLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLA-EEPEQIEQSYA 939 LI GA D G R L+ L A++AA KA GQ D+F + ++ + S Sbjct: 876 SLIKCGALDCFG-DRKILLAQLDQAIQAAQARQKALRRGQMDLFSAVGHDQAAPLRFSRP 934 Query: 940 SCQP--WPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAA 997 +P P + +L ERE LG+YL+ HP+++++ + R G V++ ++ G+ + Sbjct: 935 DIEPPDIPTRTLLGWERELLGVYLSAHPLDEFVL-LGRLRGLVQIAELDDESVGQTVELL 993 Query: 998 GLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQV 1054 L+ R + T+ G + + L+DRSG +E ++F D + ++ L ++ I+++ +V Sbjct: 994 ALISGVRKLTTRTGRVMAVLQLEDRSGTIEAVVFPDLYETTRERLAEESIVLLQARV 1050 >UniRef50_C4ZGM2 DNA polymerase III, alpha subunit n=7 Tax=Bacteria RepID=C4ZGM2_EUBR3 Length = 1181 Score = 741 bits (1913), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/1180 (36%), Positives = 655/1180 (55%), Gaps = 53/1180 (4%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F HL H++YS++DG K VK+ LGM + AITD N+ G+V+FY I P+ Sbjct: 18 FCHLHTHTEYSLLDGSNKIKEYVKRVKELGMNSAAITDHGNMYGVVEFYKTAKANDINPV 77 Query: 66 VGAD--------FNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIID 117 +G + F+ + D HL +LA NNTGY NL ++S + GY P +D Sbjct: 78 IGCEVYVAPNSRFDRETSHGDDRYYHLILLAENNTGYANLMKIVSIGFTEGY-YYRPRVD 136 Query: 118 RDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRTGRP 176 + L +EGLI LS G++ R ++RG E Y++ F D +FLEL G Sbjct: 137 FETLERYHEGLICLSACLAGEIPRYIVRGFYDEAKEIARKYQDCFGKDNFFLELQDHGID 196 Query: 177 DEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSP 236 D++ + +++ + +V TNDV + SD +AH++ + I G + D R R Sbjct: 197 DQKLVNQQLLRMSKELEIGLVCTNDVHYTYESDAEAHDVLLCIQTGKKVSDEDRMRYDGG 256 Query: 237 QQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF--PTGDMSTEDYLVK 294 Q +++SEE+M LF EA+ NT +IA RCNVT+ G Y +P++ P G S E +L + Sbjct: 257 QFFVKSEEQMRALFPYATEAIENTQKIADRCNVTLEFGNYKIPKYEVPEGYDSAEAFLTE 316 Query: 295 RAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDN 354 ++G E+ + LK+ ++ EL +I MGF Y LIV ++I W + + Sbjct: 317 LCEKGFREKYIGCGEYSADELKK---IHADMDYELGIIKTMGFIEYILIVWDYINWCRTH 373 Query: 355 GVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQV 414 VGPGRGS AGS V Y ITD+DP++++LLFERFLNPERVSMPD DVDF +R + Sbjct: 374 DCWVGPGRGSAAGSRVCYCTGITDIDPVKYNLLFERFLNPERVSMPDIDVDFEYAERYRA 433 Query: 415 IEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKA 474 IE+V YG D+V+QI+TFGTMAA+ VI+ VG+ L PY DR++K++P + +T+ KA Sbjct: 434 IEYVQQKYGHDSVTQIVTFGTMAARGVIKSVGKALDFPYAETDRLAKMVPQELNITIDKA 493 Query: 475 FEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEG 534 + P+ IY++D V +IDMA++LEG+ + HA GVVI P +D+ PL +G Sbjct: 494 LQMNPEFKGIYDSDARVHEMIDMAKRLEGLPNHTSVHAAGVVIYPGVASDYVPLGRANDG 553 Query: 535 KHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDK 594 P +++ +E GL+K DFLGLRTLT++ +++ I R + +DI I +DK Sbjct: 554 S-PTAEYNMVQLEELGLLKMDFLGLRTLTVLKDSVKNIKASRGID----VDIDHIDFNDK 608 Query: 595 KSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDR 654 + D + +T VFQLES GM+ +K L P FED++A ++L+RPGP+ + N+I Sbjct: 609 GTLDFIGTGKTEGVFQLESAGMQSFMKELSPQSFEDIVAGISLYRPGPMD--FIPNYIKG 666 Query: 655 KHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK 714 K+ +EISY + L+ +LEPTYG I+YQEQVMQI Q L+GYT+G AD +RRAM K Sbjct: 667 KNNPKEISYVTPE-----LESILEPTYGCIVYQEQVMQIVQKLAGYTMGQADNIRRAMSK 721 Query: 715 KKPEEMAKQRSVFAEGAEK--------NGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 KK + +R F G E+ NGI+ + A I+D + FA Y FNKSH+AAYA Sbjct: 722 KKQYVIDAERQSFVYGDEERGIKGCVANGIDEKAANSIYDSMVDFAKYAFNKSHAAAYAK 781 Query: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 +S QT WLK +YP EFMAA+MT+ +DN+ K + C MG+K+LPPDIN G F Sbjct: 782 ISVQTAWLKNYYPVEFMAALMTSVIDNSAKAAQYLYSCRDMGIKVLPPDINCGQGEFTAE 841 Query: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKL-NRRVLEKLIMS 885 D + YG+ AIK +G I+ IIE R GG +R L D RT K+L N+R +E LI + Sbjct: 842 GD-HVRYGMYAIKSLGRPVIDQIIEERESGGRYRTLSDFIERTCQKELINKRAIENLIKA 900 Query: 886 GAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQ-IEQSYASCQPW 944 GA D L R + + K+ GQ +F ++++E Q E Y + + Sbjct: 901 GACDSLDGTRKQMAMVYASIVDRVQHDKKSTMAGQMSLFDLVSDEDRQSFELKYPNVGEY 960 Query: 945 PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKV-------ITAA 997 + L E+E LG+YL+GHP+ +Y +++ + + + E G V + Sbjct: 961 DAEEALAYEKEVLGIYLSGHPLEKYAATLKKNITANAIDFVLEEESGAVKIEDNAHVVIG 1020 Query: 998 GLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFD 1057 G++ + TK + T++D +G +EV++F ++YQ+ L+ D + V G + + Sbjct: 1021 GMIATKTIKFTKYNQAMAFITIEDLTGTVEVIIFPRDYERYQRYLQDDAKIFVIGHATVE 1080 Query: 1058 DFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHL 1117 D G K+ +++ DE ++ ++ + +LL +R+S G V + Sbjct: 1081 DEQNG-KIICEKIIPFDELPKQLWLRFDTMEDYKKNESRLLETIRES-----DGGDEVII 1134 Query: 1118 YYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSEQVEL 1157 Y AD + + G + V+ ++ L+ L + E ++ Sbjct: 1135 YI--ADTKQMKKLGRNYSVNANNELMEQLLEFLDKENAKI 1172 >UniRef50_C7RGV3 DNA polymerase III, alpha subunit n=4 Tax=Clostridiales Family XI. Incertae Sedis RepID=C7RGV3_ANAPD Length = 1148 Score = 739 bits (1909), Expect = 0.0, Method: Compositional matrix adjust. Identities = 430/1183 (36%), Positives = 681/1183 (57%), Gaps = 69/1183 (5%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 +F HL VH++YS++DG ++ L+ +A LGM +LAITD + G+++FY GIKP Sbjct: 4 KFTHLHVHTEYSLLDGFSRIDLLLDRAKELGMDSLAITDHGQMYGVIEFYKQAKKRGIKP 63 Query: 65 IVGADFNV-QCDLLGDELT-----HLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDR 118 I+G + V + D E + HL +LA N GY+NL ++S+AY G+ P + Sbjct: 64 IIGCEVYVSENDHTIKEASNRRYYHLILLAKNMDGYKNLIKIVSEAYVNGF-YYKPRVSF 122 Query: 119 DWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRTGRPD 177 D++ + +E +I LS G+V + L+ + E YEE F ++LEL G + Sbjct: 123 DFIKKYSEDIIALSACLNGEVSQRLIENDYESAKETAQRYEEAFGKGNFYLELQNHGIKE 182 Query: 178 EESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQ 237 + + E +P+VATND+ +I+ D ++ + I G + D R + + + Sbjct: 183 QNIVNRGLARIHEEEDIPLVATNDIHYINKEDAYYQDVLLCIQTGKLVKDEDRMKMPASE 242 Query: 238 QYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTED--YLVKR 295 Y++S EM ELF A+ NT +IA +CNV E LP F + D YL K Sbjct: 243 FYLKSYNEMKELFGAYQGAIENTQKIADQCNVEFTFHEPHLPYFTKVEEGLTDLEYLKKL 302 Query: 296 AKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNG 355 +GL ++ + E+++ R + E++VI MG+ YFLIV +F++++++N Sbjct: 303 VDQGLIKKYGSI----SEKIRSRAD------KEIKVIADMGYVDYFLIVWDFVRYAREND 352 Query: 356 VPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVI 415 + VGPGRGS AGS+V+YAL IT +DPL++ L+FERFLNPERVSMPD D+DF RD+V+ Sbjct: 353 IAVGPGRGSAAGSIVSYALDITQIDPLKYKLIFERFLNPERVSMPDIDIDFDYVLRDKVV 412 Query: 416 EHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAF 475 E+V ++YGRD VSQI+TFG M A+ +RDVGRVL Y VD+I+KLIP GMT+ KAF Sbjct: 413 EYVNELYGRDHVSQIVTFGRMQARNAVRDVGRVLDISYAKVDKIAKLIPQAIGMTIDKAF 472 Query: 476 EAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGK 535 ++ + EIYE+D E K LID ARK+EG+ R+ HA GVVI+ +TD PL + Sbjct: 473 DSSSKFKEIYESDVEAKRLIDTARKVEGLPRHTSIHAAGVVISKEVLTDIIPLALSND-- 530 Query: 536 HPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKK 595 VTQ+D +++E GL+K DFLGLR LT+I ++ + K R + +D++ I ++DK Sbjct: 531 LVVTQYDMTEIEELGLLKMDFLGLRNLTVIKNTIKDVKKNRGID----VDLSKIDVNDKN 586 Query: 596 SFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRK 655 D ++T +FQ ES GM++ +K L+P F+D+IA +LFRPGP+ + +I K Sbjct: 587 VIDQFNNAKTIGIFQFESAGMRNFLKNLKPTVFDDLIAANSLFRPGPMDE--IPKYIHNK 644 Query: 656 HGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKK 715 + ++++ D +LKP+L+ TYGII+YQEQVMQI Q L+GY+LG AD LRRAM KK Sbjct: 645 NNPADVTFID-----PALKPILDVTYGIIVYQEQVMQIVQKLAGYSLGEADNLRRAMSKK 699 Query: 716 KPEEMAKQRSVFAEGAE------------KNGINAELAMKIFDLVEKFAGYGFNKSHSAA 763 K M + R +F +G +NG++ A +I+D + FA Y FNKSHSAA Sbjct: 700 KMAVMEENRGIFIKGKTDSSGNVVIPGCIRNGVDESSANQIYDEMISFAKYAFNKSHSAA 759 Query: 764 YALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHF 823 Y+LV+ QT +LK +YP E+MA ++++ MD + K+ V+E +G+++LPPD+N F Sbjct: 760 YSLVAIQTAYLKYYYPEEYMANLISSVMDQSSKLYLYVNETKALGIEVLPPDVNKSFAEF 819 Query: 824 HVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCART---DTKKLNRRVLE 880 V ++G+I++G+ IK VG I++I++AR K G F D R D++ LN++ +E Sbjct: 820 SV-EEGKIIFGLSGIKNVGSNLIDSIVKARKKDGKFTNFKDFLQRVDEIDSRSLNKKGIE 878 Query: 881 KLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYAS 940 LI +GAFD L R++LM A+ A + K GQ ++ LA++P++ + Sbjct: 879 SLIKAGAFDSLKYTRSSLMAIYEKAISAVSDNRKINVKGQLNLLDDLADKPKE-DVRIQE 937 Query: 941 CQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVG-GVRLKDMHPTER-----GKVI 994 +P++ L E+E LG Y++ HP++ + +V KD R K + Sbjct: 938 INEFPKKTKLKLEKEVLGFYISDHPLSDLGDRLGDFVNFTTDYKDHIDDTRIHLLDNKFV 997 Query: 995 TAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQV 1054 + AG++ ++TK+ + TL+D G +E+++F + KY+ ++++D +IV G + Sbjct: 998 SMAGVITNKSEIMTKKRQLMCFATLEDMQGSIEIVIFPEVYRKYRNVIDEDSAVIVKGNL 1057 Query: 1055 SFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIP 1114 D+ +K+ E +DI++ K + L ++ N++R L ++ GT P Sbjct: 1058 QVDE--RDIKLLTNEFVDIEKLNFK-----TLYLKSEYLE---YNKVRNILVQNK-GTTP 1106 Query: 1115 VHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSEQVEL 1157 V +Y+ AD ++ +++ + L +G E V++ Sbjct: 1107 VVIYF--ADKNKSVKLDKKLWFDINEKSIKVLEEFLGKENVKI 1147 >UniRef50_Q3Z6I2 DNA polymerase III, alpha subunit n=5 Tax=Dehalococcoides RepID=Q3Z6I2_DEHE1 Length = 1170 Score = 737 bits (1903), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/1067 (39%), Positives = 623/1067 (58%), Gaps = 49/1067 (4%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F HL VH+++S++DG+ + + LV +A LGM ALAITD + G+ +FY AGIKPI Sbjct: 2 FCHLHVHTEFSLLDGMCRISQLVARAKELGMEALAITDHGTMHGIPRFYKEAKEAGIKPI 61 Query: 66 VGADFNVQCDLLGDELT---------HLTVLAANNTGYQNLTLLISKAYQRGYGAAGPII 116 +G++F + GD HL +LA NN GY NL L S+++ G+ P I Sbjct: 62 LGSEFYLA---YGDRTAKTAADKNYYHLVLLAKNNKGYHNLIQLSSRSHIEGF-YYKPRI 117 Query: 117 DRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRP 176 D++ L + +EGL+ LS G+V R +L E +Y++ F + Y++E+ R P Sbjct: 118 DKELLEKYSEGLVCLSACPSGEVPRLILENRFDEAREAALWYKKTF-ENYYIEIQRHPMP 176 Query: 177 DEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSP 236 D E + +A +P+VATND ++D D H++ + I + D KR + Sbjct: 177 DLEKINSVLIPMARELDIPLVATNDTHYLDKEDAPYHDLLLCIGTNALVSDEKRMKMEGD 236 Query: 237 QQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF--PTGDMSTEDYLVK 294 Y++S EEM E + DIP+A+ NT +IA+ CNV++ G LP+ P G + ++YL Sbjct: 237 YFYLKSPEEMAEAYQDIPDAIENTAKIAEMCNVSLDFGRLHLPEIDIPAGK-TPDEYLAD 295 Query: 295 RAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDN 354 EGL + +PD + E +RL+ EL VI F YFL+ + I++ K+ Sbjct: 296 LCYEGLPK----FYPDASQ------EILDRLKYELDVIKTTEFANYFLVTWDIIRFVKEK 345 Query: 355 GVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQV 414 G+ G RGS A S+V Y L IT LDP+++ L+FERFLN ER MPD D+DF ++R++V Sbjct: 346 GLYYGV-RGSAASSIVLYCLGITALDPIKYKLVFERFLNIERKEMPDIDMDFQDDRREEV 404 Query: 415 IEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKA 474 IE+V YGRD VSQIITFGT+ AKA +RD GR LG Y VDR++K+IP MTL KA Sbjct: 405 IEYVVGKYGRDHVSQIITFGTLGAKAAVRDAGRALGMAYADVDRVAKVIPFSLHMTLDKA 464 Query: 475 FEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEG 534 E +L ++Y D V+ L+D ARK+EG++R+A HA GVVI+ +TD PL + Sbjct: 465 MEESTELKDMYNQDSVVRNLVDAARKIEGLSRHASTHAAGVVISKDPLTDHVPLQRLSKE 524 Query: 535 KH---PVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPL 591 + +TQ+ D+ GL+K DFLGL L I+ A +I + ++ +P AIPL Sbjct: 525 NNLGLVMTQYTMEDIAKIGLLKMDFLGLVNLNILGKACAVIKEYTGQDIDP----LAIPL 580 Query: 592 DDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNF 651 DD K+F++L ET VFQLE GM+ IK L+P F D+ A+VAL+RPGP++ + F Sbjct: 581 DDVKTFELLAAGETVGVFQLEGTGMRRYIKELKPTVFSDIGAMVALYRPGPMEQ--IPRF 638 Query: 652 IDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRA 711 I KHG E I+YP H +L+P+LE TYG+I+YQEQV+ IAQ SGYTLG AD+LR+A Sbjct: 639 IKSKHGLEPITYP-----HPALEPILEETYGVIVYQEQVLFIAQTFSGYTLGQADILRKA 693 Query: 712 MGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQT 771 MGKK M KQ++ F +GA KNG E+A ++F LVE FAGY FNK+H+ +YAL++YQT Sbjct: 694 MGKKIAAVMQKQKANFIDGALKNGYTPEIAEEVFALVEPFAGYAFNKAHATSYALIAYQT 753 Query: 772 LWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHV--NDDG 829 +LKA+YP E++ A + A D TEKVV V E MG+++LPPDIN +F + N+DG Sbjct: 754 AYLKANYPVEYITAYLQAFCDVTEKVVTAVTEARHMGIEVLPPDINRSGVNFEIEQNEDG 813 Query: 830 --EIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGA 887 +I +G+ A+K VG +E I+ R G + + DLC R + LN+RV+E L+ +GA Sbjct: 814 VKKIRFGLAAVKNVGVAAVEPIVAERKANGEYLSVEDLCRRAEGSSLNKRVMESLVKAGA 873 Query: 888 FDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEE-PEQIEQSYASCQPWPE 946 D LG R L+ +L + L A + K + Q MF + ++ P + + P Sbjct: 874 LDSLG-DRGTLLFNLPNILSLAQREQKLKDSNQTTMFDLFGQQSPMPMPSLEMAESPVTT 932 Query: 947 QVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVM 1006 + L E+E +G++++ HP Y + V + + +T AG+V + RV Sbjct: 933 REKLQWEKELVGIFISEHPFTPYASAAQE-VTTALCGQIDEELDNQPVTVAGMVASVRVS 991 Query: 1007 VTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQ 1053 T+ G + ++D GR+EV + + L E+ IL+V G+ Sbjct: 992 ATREGKPFVMAEIEDLVGRVEVAAWPKVYAATKALWEEGNILLVEGK 1038 >UniRef50_O83675 DNA polymerase III subunit alpha n=5 Tax=Treponema RepID=DPO3A_TREPA Length = 1170 Score = 735 bits (1897), Expect = 0.0, Method: Compositional matrix adjust. Identities = 449/1188 (37%), Positives = 657/1188 (55%), Gaps = 71/1188 (5%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M+ FVHL VHS+YS++DG + LV+ A +LG ALA+TD N+ G + F Sbjct: 1 MARMSFVHLHVHSNYSLLDGASSLQRLVRTAKSLGQEALALTDHGNMFGALHFQKVCSAE 60 Query: 61 GIKPIVGAD--------FNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAA 112 GIK I+G + F+ +G HL VLA N TGY+NL +L SKAY G Sbjct: 61 GIKAIIGCELYVAPESRFDRSEHTIGRRYYHLIVLAKNETGYRNLMVLSSKAYIEGM-YY 119 Query: 113 GPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELI 171 P +D + L + EGLI LS G + LL+G +E Y F D YF+E+ Sbjct: 120 KPRVDDELLAQHAEGLICLSSCLAGQLPYLLLQGRKREAEEHARKYRALFGVDNYFIEVQ 179 Query: 172 RTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRP 231 G +E+ +ELA G+P+V TNDV + + D A +I + I DP R Sbjct: 180 DHGLDEEKKVAPLLIELACRLGIPLVVTNDVHYAEQEDSVAQDILLCIGTKKNRSDPNRL 239 Query: 232 RNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLP--QFPTGDMSTE 289 + + + Y++S E+M +LF PE + NTV IA+RCNV + LP Q P S E Sbjct: 240 KFKTDEFYLKSSEKMAQLFPHYPEMVLNTVRIAQRCNVRIPQPGPLLPLYQIPHEFSSKE 299 Query: 290 DYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQ 349 Y+ GL +R A + E +K R +Y EL VI +M F GYFLIV +FI Sbjct: 300 HYIRHLVHRGLYDRYAVV----SEEIKARADY------ELDVIVRMDFVGYFLIVWDFIT 349 Query: 350 WSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCME 409 W+K++ +PVGPGRGSGA S+VAYALKITD+DPL + LLFERF+NPER+SMPDFD+DFC E Sbjct: 350 WAKEHDIPVGPGRGSGASSIVAYALKITDIDPLRYKLLFERFMNPERISMPDFDIDFCFE 409 Query: 410 KRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGM 469 +R +VIE+V YG D V QIITFGT+ KA IRDVGRVL P V I+KL+P DP + Sbjct: 410 RRQEVIEYVRARYGNDNVGQIITFGTLKPKAAIRDVGRVLDIPLSEVLMITKLMPDDPKL 469 Query: 470 TLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLY 529 T KA+E+E QL ++ + + L +A KLE RN HA G+VI T +TD+ PLY Sbjct: 470 TFKKAYESE-QLAQM-KQEPRYAELFQIAEKLEDTNRNTSLHAAGIVIGKTALTDYVPLY 527 Query: 530 CDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAI 589 D + TQF +E GLVK DFLGL+TLT+I ++ RR I+ I Sbjct: 528 KDSKTGKISTQFGMDLIEDCGLVKMDFLGLKTLTLIQRTQNLV--RRKGGKYTTFSISDI 585 Query: 590 PLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVD 649 D +F ML ++ AVFQ ESRGM+ ++KR +P ED+IAL AL+RPGP+ +D Sbjct: 586 SDQDPTTFSMLAEGKSAAVFQFESRGMQGILKRAKPSKMEDLIALNALYRPGPM--AFID 643 Query: 650 NFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLR 709 +I+ K +I YPD L+ +L TYG+I+YQEQVMQ+AQ ++G++LG AD+LR Sbjct: 644 QYIESKRDPGKIKYPD-----PCLEDILSETYGVIVYQEQVMQVAQRIAGFSLGEADILR 698 Query: 710 RAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSY 769 RAMGKKK M +++ FAE AEK G + + A IF+++ FAGYGFNKSH+ AY++V+Y Sbjct: 699 RAMGKKKLAVMQEKKKEFAERAEKQGFDKKHAENIFEILIPFAGYGFNKSHATAYSVVAY 758 Query: 770 QTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDG 829 QT +LKA++PAEFMAA ++ ++++ EK+ + E +MGL I PD+N+ +F V +G Sbjct: 759 QTAFLKANFPAEFMAANLSNEINSAEKLPLYMAEAEKMGLSIQKPDVNASEPYFSVC-EG 817 Query: 830 EIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFD 889 IVYG+ IKG+GE + + R + G + ++ R LN++ E +I +G FD Sbjct: 818 CIVYGLLGIKGLGEQVAFDVFDERIRNGPYTSFVEVLDRVPATSLNKKNAEIMIKAGCFD 877 Query: 890 RLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVV 949 R G RA+L L DA+K + + QA +F + E E ++ + W ++ Sbjct: 878 RFGVTRASLTAHLDDAMKYVARKKAVTSSRQASLFDE-TDLGECSEYTFPVMEEWSQRER 936 Query: 950 LDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKV---ITAAGLVVAARVM 1006 L E+E +G Y++GHP+++Y +G D+ E + G++ A Sbjct: 937 LRIEKELMGYYISGHPLDEY----RSVIGEKATLDLGHIENARSENKYLIVGVLNAIHPY 992 Query: 1007 VTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMT 1066 TK G + + +D G +++++F ++++ + I+ + G V F + + Sbjct: 993 TTKSGKNMAFGSFEDLHGSVDIVVFPVLWEEHRAQFLPETIMGLVGTVDFSKETPAFLVD 1052 Query: 1067 AREVMDIDEAR-------------EKYARGLAISLTDRQIDDQL-------------LNR 1100 + V+D+++ R + + G L R + ++ Sbjct: 1053 S--VIDLEQLRFAQVKTILAGSEHRRVSSGEKTPLQKRGVSQEVHIEVSSHVRAHAQFKS 1110 Query: 1101 LRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRG 1148 L + L H G+ V L + D R + + + +VS ++ L+G Sbjct: 1111 LYEILSAHTGGSGEVFL-HMHVDDRTYVVYVPSCKVSATEVFAQQLKG 1157 >UniRef50_D1C3B9 DNA polymerase III, alpha subunit n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C3B9_SPHTD Length = 1167 Score = 733 bits (1893), Expect = 0.0, Method: Compositional matrix adjust. Identities = 443/1128 (39%), Positives = 639/1128 (56%), Gaps = 53/1128 (4%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M+ F HL +H+++S++DG+ + + +A GM +AITD + G++ +Y A Sbjct: 1 MTARPFAHLHLHTEFSLLDGMGRIKDYMARAREFGMEHIAITDHGVMYGVIDWYKAARAH 60 Query: 61 GIKPIVGADFNVQCDLLGD---ELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIID 117 + PI+G + + + D + HL +LA N GY+NL L S+A G+ P +D Sbjct: 61 DLHPILGIEAYLAPGSIEDREKQSYHLLLLAENERGYRNLLRLASRASLEGF-YYKPRVD 119 Query: 118 RDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRTGRP 176 D L L +G+I S G V + L+G +E F PD +++E+ G Sbjct: 120 LDMLNSLRDGIICTSACLGGPVANNFLQGRDEEAVRLAGILKEMFGPDHFYIEIQDHGIE 179 Query: 177 DEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSP 236 + +ELA LP+VATNDV ++D SD E+ V I TL DPKR R S Sbjct: 180 GQRQTNPQLIELARKLDLPLVATNDVHYVDKSDAPLQELLVCIQTNTTLHDPKRLRMESD 239 Query: 237 QQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQ--FPTGDMSTEDYLVK 294 Q Y +S EEM LF ++PEAL NT+ IA+RCNV + G LP P G M+ +YL + Sbjct: 240 QLYFKSPEEMWRLFGEVPEALENTIRIAERCNVDLEFGRLHLPDPGIPEG-MTPHEYLCQ 298 Query: 295 RAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDN 354 +G+ R +P+ E ++RR EY EL VI + GF Y LIV +F ++++ Sbjct: 299 LCWDGVRRR----YPEVTEEVRRRLEY------ELDVIQETGFSSYMLIVRDFAEFARQR 348 Query: 355 GVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQV 414 + G RGS A S+V Y L ITD+DPL L+FERFLN ER MPD D+DF +R +V Sbjct: 349 RISFGV-RGSAAASIVLYTLGITDIDPLANRLVFERFLNRERREMPDIDMDFADNRRAEV 407 Query: 415 IEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKA 474 I++VA YG D V+QIITFGTM AKA IRD GR +G Y VDRI++LIP +TL KA Sbjct: 408 IDYVASKYGHDRVAQIITFGTMGAKAAIRDTGRAMGWAYNDVDRIARLIPSTLNITLDKA 467 Query: 475 FEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCD--- 531 + P+L ++YE D + LID A++LEG++R+AG HA GVVIA + + PL Sbjct: 468 LQESPELRQLYETDPACRELIDNAKRLEGISRHAGTHAAGVVIAADPLVEHLPLQRPARA 527 Query: 532 EEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPL 591 EEG P TQF V GL+K DFLGL LTI+ A+E+I + +P IP Sbjct: 528 EEGALPTTQFPMETVAEIGLLKMDFLGLANLTILGEAVELIRQTTGVEIDP----KKIPD 583 Query: 592 DDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNF 651 D+K++ ML + ET VFQLES GM+ I+ L+P ++ A+VAL+RPGP+Q + + Sbjct: 584 GDEKTYAMLSQGETFGVFQLESAGMRRYIRELRPSSIAELAAMVALYRPGPMQH--IPTY 641 Query: 652 IDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRA 711 KHG E I YP H L +L+ TYG+I+YQ+QV+ IA+ +GYTLG AD++R+A Sbjct: 642 CRAKHGLEPIRYP-----HPDLAEILDETYGVIVYQDQVLLIARKFAGYTLGEADIMRKA 696 Query: 712 MGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQT 771 MGKK PE M +R F GA++ G +AE A +F+L+E FAGY FNK+H+ YA +SYQT Sbjct: 697 MGKKIPEVMKAERERFLRGAQEKGYSAEDAQNVFNLIEPFAGYAFNKAHAVCYATISYQT 756 Query: 772 LWLKAHYPAEFMAAVMTADMDN----TEKVVGLVDECWRMGLKILPPDIN-SGL-YHFHV 825 +LKA+YPAE+M AV+ + T++V V EC ++G+ +LPPDIN SG+ + + Sbjct: 757 SYLKANYPAEYMTAVLRGAPSHPSGATQRVAAAVAECQKLGIPVLPPDINKSGVDFEIEI 816 Query: 826 NDDGE--IVYGIGAIKGVGEGPIEAIIEARNK--GGYFRELFDLCARTDTKKLNRRVLEK 881 +DG I +G+ +K VGE +E+I+ AR G F C D +NRRV E Sbjct: 817 LEDGTKAIRFGLAIVKNVGEAAVESIVAARKSLPGERFESFEQFCDTVDWTVVNRRVAES 876 Query: 882 LIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASC 941 LI GA D LG RA L+ L A+ AA +A GQ D+F + + Sbjct: 877 LIKCGALDSLG-DRATLLAVLEQAISAAQSRQRAAKRGQIDLFSAAPVAAPALALAMPDD 935 Query: 942 QP-WPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLV 1000 P P +L E+E LGLYL+ HP+N + I R G VRL ++ G+ I A ++ Sbjct: 936 VPEIPRATLLAWEKELLGLYLSSHPLNDLVPLI-RDGGYVRLAEIDEETVGQQIEAIVMI 994 Query: 1001 VAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFS 1060 R + TK + IC L+D++G +E+++F D ++ + L D I+ V+ +V D + Sbjct: 995 TGMRKLTTKTNRVMAICQLEDQTGAIEMVVFPDLYEQAGEHLVVDSIVRVAARV--DQRN 1052 Query: 1061 GGLKMTAREV--MDIDEAREKYARGLAISLTDR---QIDDQLLNRLRQ 1103 +++ A V + I+E + R + + L D D + +NR+R+ Sbjct: 1053 DRIQLVADRVGPVTIEEPKPVVVREVHVRLPDTGNVTADVETMNRVRE 1100 >UniRef50_D1CB25 DNA polymerase III, alpha subunit n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CB25_THET1 Length = 1180 Score = 733 bits (1891), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/1092 (38%), Positives = 634/1092 (58%), Gaps = 55/1092 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL +HSDYS++DGL K V A A GM A+A+TD + G ++ Y AGIKPI Sbjct: 5 FVHLHLHSDYSLLDGLGKIKDYVSLAKAYGMKAIALTDHGVMYGAIEMYTEALEAGIKPI 64 Query: 66 VGADFNV-------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDR 118 +G + V + L + HL VLA + GYQNL L+S A+ GY P ID Sbjct: 65 IGCELYVAPRSRHDREKRLDSDYAHLLVLAKDYEGYQNLIKLVSYAFLEGY-YYKPRIDH 123 Query: 119 DWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRTGRPD 177 + L + ++GLI+ S G+V + LL+G E Y + YF+EL P Sbjct: 124 ELLAKYSKGLIVTSSCIGGEVPQLLLQGKDKEARELADKYRSIVGRENYFIEL--QDHPF 181 Query: 178 EESYLHAA--VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYS 235 EE + +ELA+ +P+VAT DV + D +I + + G + D R R S Sbjct: 182 EEQRIANTKLIELAKDLEIPLVATCDVHYPRQEDAAIQDILLCVQTGKQVTDKNRMRMSS 241 Query: 236 PQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF--PTGDMSTEDYLV 293 YMRS +EM + F D PEA+ NT IA+ CN+ + +G++ LP F P G + YL Sbjct: 242 DTNYMRSPQEMEQAFRDYPEAIKNTALIAEMCNLQIPMGKWILPHFDVPEG-YDLQSYLR 300 Query: 294 KRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKD 353 +EGL ++ + + E +RLE EL VIN G+ Y LIV +F+ W++ Sbjct: 301 YLCEEGLRQKYS----------EVTQEIRDRLEYELDVINTKGYTAYMLIVQDFVNWARS 350 Query: 354 NGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQ 413 G+ V RGS AGSLV+Y L IT DP+E+ L FERFL R S PD D+DF ++R++ Sbjct: 351 RGIAVT-SRGSAAGSLVSYLLNITTADPIEYKLPFERFLTIHRPSPPDIDMDFEDKRREE 409 Query: 414 VIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAK 473 VIE+V YG + V+QIITFGTM A+A +RDVGR LG Y D I+K+I PG ++ + Sbjct: 410 VIEYVTSKYGEENVAQIITFGTMEARAAVRDVGRALGISYSDTDTIAKMI--QPGWSIKE 467 Query: 474 AFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEE 533 A E L + YE DE +K LID+A KLEGVTR+A HA GV+I+ I ++APL D+ Sbjct: 468 ALENSLALRQWYERDERIKQLIDVASKLEGVTRHASTHAAGVIISREPIINYAPLQKDKN 527 Query: 534 GKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDD 593 G P+ QFD E GL+K DFLGL L+I+ A++ I + R + +++ +PLDD Sbjct: 528 GSRPLVQFDMRMCEKIGLLKMDFLGLANLSILGRAVKTIKQTRGID----IELDKLPLDD 583 Query: 594 KKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFID 653 K++++L ETT VFQLES GM+ IK L+P D+ A++AL+RPGP+ M+ +I Sbjct: 584 TKTYELLSSGETTGVFQLESAGMRRYIKELKPSNIRDVAAMIALYRPGPMD--MIPTYIA 641 Query: 654 RKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMG 713 RKHGRE + Y L+P+L+ +YG+++YQ+ ++ IA ++GYT AD LR+A+G Sbjct: 642 RKHGREPVEY-----LVPGLEPILKDSYGVLVYQDDILLIAIEIAGYTWEEADKLRKAVG 696 Query: 714 KKKPEEMAKQRSVFAEGA-EKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTL 772 KK EE+ QR F +G E G++ E A +++D +E FA YGFNK+H+AAY+LV+YQT Sbjct: 697 KKIREELEAQRDKFIKGCQEHGGLSPEKARELWDWMEPFARYGFNKAHAAAYSLVAYQTA 756 Query: 773 WLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGE-- 830 +LKA+YP+E+M++++T MDN+EKV + EC RMG+++LPP +N F + + Sbjct: 757 YLKANYPSEYMSSLLTVGMDNSEKVASGIVECNRMGIRVLPPSVNDSFEEFTLEPQSQRP 816 Query: 831 -----IVYGIGAIKGVGEGPIEAIIEARNK--GGYFRELFDLCARTDTKKLNRRVLEKLI 883 I +G+GA+K VG GPI AI+ AR F+ C D K++N+R LE LI Sbjct: 817 GEPIPIRFGLGAVKNVGSGPISAIVSARESLPDKRFKSFEHFCTVVDFKQINKRALESLI 876 Query: 884 MSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFG-VLAEEPEQIEQSYASCQ 942 +GAFD G HR+ L+ ++ +A+ + +A +GQ +FG + + + Sbjct: 877 KAGAFDEFG-HRSQLLAAIDEAIALNQKMQRASDLGQFSLFGDAFSSQDHLPSLTLPEVD 935 Query: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVA 1002 P++ +L E+E LGLYL+ HP+N L + R + ++ G+ + A ++V Sbjct: 936 EAPKEQLLAWEKEMLGLYLSEHPLNAVLGK-RRLDSTSLISEISEEMVGQTVRVAAMLVN 994 Query: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGG 1062 ++ TKR + I L+D++ ++ ++F + +KY+ LL D +L+V+G++ D+ Sbjct: 995 PQIRTTKRQQEMLIGKLEDQTSSIDFVVFPEQYEKYRDLLVSDAVLLVTGKL--DERQES 1052 Query: 1063 LKMTAREVMDID 1074 ++ V ID Sbjct: 1053 FQIVCESVAKID 1064 >UniRef50_D0RP61 DNA polymerase III subunit alpha n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RP61_9RICK Length = 1139 Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/1042 (38%), Positives = 611/1042 (58%), Gaps = 33/1042 (3%) Query: 7 VHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIV 66 ++L++HS +S+ +G K LV + A+ + D NL G ++F GI+P++ Sbjct: 6 INLKIHSQFSICEGAIKIDKLVNYCKEHSVTAVGLCDSENLSGALEFSSQLKKEGIQPLI 65 Query: 67 GADFNVQCDLLGDELTHLT--VLAANNTGYQNLTLLISKAY-QRGYGAAGPIIDRDWLIE 123 G ++ ++ G ++T+ T + A N GY+NL L SK+Y P I+ + L + Sbjct: 66 GTKIYIKENVDG-KITYGTASLYAKNQIGYKNLLKLSSKSYLDLQEHDDKPNINLNILKK 124 Query: 124 LNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLH 183 +EG+I+L GG L++ V ++ F D ++E+ R E+ Sbjct: 125 YHEGIIILIGGSFSFFSDLLVKNKDEYCFNEVKKLKDIFNDNIYIEIQRHNESHEKQLEK 184 Query: 184 AAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSE 243 ++L+ +P++ATN+V +++ ++AH+ + + + +++ R + YS Q Y + Sbjct: 185 KLIKLSSDTSIPLIATNEVFYLEQDSYNAHDAFICVGEKNYVNEKNRLK-YSNQHYFKKT 243 Query: 244 EEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKEGLEER 303 E LFAD+P+AL N + N + LP F T L +A++GLEER Sbjct: 244 SEFENLFADLPDALENNKNFKYKFNYFPKKSNPLLPSFSENGKDTNQILKDKAEKGLEER 303 Query: 304 L-AFLFP-----DEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVP 357 L +++P +++ +K+ Y +RL E+ VI++M F GYFLIV ++I W+K N +P Sbjct: 304 LEKYVYPRLGATTDKDEIKKN--YFDRLNYEVNVISKMKFSGYFLIVSDYINWAKSNNIP 361 Query: 358 VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEH 417 VGPGRGSGAGSLVA+ L ITDLDP+ F L+FERFLNP+R+SMPDFD+DFC E RD+VI + Sbjct: 362 VGPGRGSGAGSLVAWCLSITDLDPIRFGLIFERFLNPDRISMPDFDIDFCQEGRDEVINY 421 Query: 418 VADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAF 475 V D Y + V+QIITFG + A+ +RD+GRVLG PYG VD++ K+IP DP ++LA++ Sbjct: 422 VKDKYP-NKVAQIITFGKLQARMALRDIGRVLGLPYGRVDQLCKMIPFDPSRPLSLAESI 480 Query: 476 EAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGK 535 EP+L E + D +K LI+ A KLEG+ RN HA GVVI + + PLY D Sbjct: 481 AIEPRLQEAEKNDPIIKKLINYALKLEGLYRNVATHAAGVVIGDRNLDEIVPLYKDLSST 540 Query: 536 HP--VTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDD 593 P VTQFD E AGLVKFDFLGL+TLT+I +E I K +A DI+ I L D Sbjct: 541 LPIPVTQFDMKSSEEAGLVKFDFLGLKTLTVIKKTIEFIQKDKA-----DFDISKINLSD 595 Query: 594 KKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFID 653 +K+F++L ET +FQLES GM++++K+L+P+ FED+IALVAL+RPGP+Q+ + +I Sbjct: 596 QKTFELLSSGETMGIFQLESSGMREVLKQLKPNKFEDIIALVALYRPGPMQN--IPTYIS 653 Query: 654 RKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMG 713 RKH +EE+ Y H L+ +L+ TYG+I+YQEQVMQIAQ LS ++ AD+LR+AMG Sbjct: 654 RKHEKEEVDYI-----HPKLENILKETYGVIIYQEQVMQIAQALSSFSASKADILRKAMG 708 Query: 714 KKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLW 773 KKK EM +Q+ F +GA KNGI+ + + IF LVEKFA YGFNKSH+AAYAL+++QT + Sbjct: 709 KKKSVEMERQKKDFIDGAVKNGISRDQVIYIFQLVEKFAQYGFNKSHAAAYALIAFQTAY 768 Query: 774 LKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVY 833 LK HYP F A M ++ NT+K+ +E R+ + I PP+IN F + D I Y Sbjct: 769 LKTHYPIYFFCASMNTELSNTDKLNLFYEELKRLKIDIRPPNINFSYAEF-LPRDKTIYY 827 Query: 834 GIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGP 893 + A+K VG I I+ R K G F + + +R ++K LN+ LE LI SG+ D L Sbjct: 828 ALSAVKAVGYDTISKIVYEREKNGKFNSISEFLSRVESKNLNKLQLEGLIKSGSLDILDN 887 Query: 894 HRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGE 953 +R L ++ + +K + K Q +F E + Q + + W + + E Sbjct: 888 NRKKLFENVPEYIKQSKSSDKVNDNEQDQLFSNEMENDQTNIQEF-NILDWDKNEKIKKE 946 Query: 954 RETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNR 1013 E++G ++ HP+ L+ +++Y +++ K AG +++ + T +GN Sbjct: 947 FESIGFFVGEHPLKSNLQVLKKYNVSSH-QELKNNNALKDAMIAGTLISIQEKKTAKGNP 1005 Query: 1014 IGICTLDDRSGRLEVMLFTDAL 1035 I L D E+ +F++ L Sbjct: 1006 YAIIKLVDLGSMYELFIFSEKL 1027 >UniRef50_Q1AX16 DNA polymerase III catalytic subunit, DnaE type n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AX16_RUBXD Length = 1165 Score = 729 bits (1881), Expect = 0.0, Method: Compositional matrix adjust. Identities = 428/1097 (39%), Positives = 628/1097 (57%), Gaps = 54/1097 (4%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F HL HS+YSM+DG ++ LV A GMP +A+TD N+ G V+FY AGIKP+ Sbjct: 8 FAHLHCHSEYSMLDGASRIRDLVAFAREEGMPGIALTDHGNMYGAVRFYQEATKAGIKPV 67 Query: 66 VGADFNVQ------CDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRD 119 +G + V D HLT+LA GY+NL L + + G+ P +D Sbjct: 68 MGCEVYVTEWGTPMSDRSRSRYYHLTLLARTPEGYKNLMKLSTAGFLHGF-YYKPRVDAR 126 Query: 120 WLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEE 179 L G+I LSG +V +L G E + Y E F D +LE+ G ++ Sbjct: 127 TLRRHGRGIICLSGCLSAEVPARILEGRLDRARELLLEYAEIF-DAVYLEMQDHGLEEQR 185 Query: 180 SYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQY 239 + L GLP+VATND + SD H++ + I G +DP R R + + Y Sbjct: 186 RVNRGLLRLHRETGLPLVATNDSHYTARSDARMHDVLLCIGTGKFYNDPNRMRFHGEEFY 245 Query: 240 MRSEEEMCELFADIPEALANTVEIAKRC-NVTVRLGEYFLPQFPTGDMST-EDYLVKRAK 297 ++ EEM LFAD PEAL NT + + + LG+ LP FP + T YL + + Sbjct: 246 VKPVEEMARLFADHPEALENTAGVVRSVEGPGIELGKTRLPNFPKPEGYTGSQYLRELCE 305 Query: 298 EGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVP 357 GL +R R PE RL+ EL+ I +MGF YFLIV +F++++KD G+ Sbjct: 306 RGLRKRYG--------RRASDPEVRRRLDFELETIARMGFEDYFLIVWDFVKYAKDRGIA 357 Query: 358 VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEH 417 VGPGRGS AGS+VAYAL+ITDLDPL++ LLFERFLNP+R+SMPD D+DF + R +V+ + Sbjct: 358 VGPGRGSAAGSIVAYALEITDLDPLQYSLLFERFLNPDRISMPDVDIDFSVAGRSEVMRY 417 Query: 418 VADMYG-RDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP-GMTLAKAF 475 V + YG + V+QIITFGT+ AKA IRD R+ +PY D+++KLIP P G TL Sbjct: 418 VTEKYGGHEHVAQIITFGTIGAKAAIRDAARIFQYPYAETDKLAKLIPEKPVGTTLKDVL 477 Query: 476 -----------EAEP----QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPT 520 E P ++ E DE K ++D A ++EG R+AG HA GVVI+ Sbjct: 478 RRTGDGRYEPTEKHPGAAREILRFVERDEAAKRVLDTAFEIEGYARHAGTHAAGVVISEE 537 Query: 521 KITDFAPLYCDEEGKHPV-TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKN 579 +TD PL + + V Q SDVE GL+K DFLGLR L +I L ++ R Sbjct: 538 PLTDIVPLQRVAKDESSVMVQHPMSDVEALGLLKVDFLGLRNLDVIEETLRIV---RETT 594 Query: 580 GEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFR 639 GE ++I IPLDD+++ + R +T VFQ ES GM+ +++ ++PD F+D++AL AL+R Sbjct: 595 GER-INIREIPLDDEETLKLFARGDTFGVFQFESSGMQRMLQEVRPDRFDDLVALNALYR 653 Query: 640 PGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSG 699 PGP+ + NF KH E + YPD + LKP+LEPTYG+ YQEQ+M+I++VL G Sbjct: 654 PGPMD--YIPNFKKGKHDPESVRYPDPR-----LKPILEPTYGVAAYQEQLMEISKVLGG 706 Query: 700 YTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKS 759 +T G AD LR+A+GKKK + +A R F G E+NG+ +A ++++ +EK GY FNKS Sbjct: 707 FTPGEADTLRKAIGKKKKDILATLRDKFMRGCEENGVEPGVARELWEWMEKAGGYSFNKS 766 Query: 760 HSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSG 819 HSA Y+ +++QT +LKAHYP +MAA++++ M+ ++V V E MG+++LPPD+N Sbjct: 767 HSACYSFLAFQTAYLKAHYPTAYMAALLSSVMNTKDRVPQYVAEARAMGIEVLPPDVNES 826 Query: 820 LYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVL 879 F V D I +G+ A+K VG+ +EAI+ +R +GG FR++FD C R D N+R L Sbjct: 827 GKRFTVVGD-TIRFGLSAVKNVGDNTVEAILASREEGGPFRDIFDFCERVDPSTYNKRTL 885 Query: 880 EKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYA 939 E LI GAFDR G R+A++ +A++ + +A + Q MF + P + E Sbjct: 886 ESLIKCGAFDRTGHSRSAMLAVHTEAVERVSRGRRASSESQFAMFDLAEVAPPRPE---V 942 Query: 940 SCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGL 999 P + L+ E+ETLGL+++ HP+ + ++ ++V + L ++ + G V+ AGL Sbjct: 943 PATPDDPRRNLEWEKETLGLFVSDHPLRPVMHKLRKHV-DLSLSELDGRQDGAVVCVAGL 1001 Query: 1000 VVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDF 1059 + RV T++G + + LDD G EV++F + +D I+ V G+V D Sbjct: 1002 ATSVRVSTTRKGETMAVLQLDDTRGMAEVLVFPRVYAGCSAGIREDAIVKVKGRV--DRK 1059 Query: 1060 SGGLKMTAREVMDIDEA 1076 G ++ A EV +++ A Sbjct: 1060 EGIPRIVAMEVEELELA 1076 >UniRef50_O34623 DNA polymerase III subunit alpha n=111 Tax=Bacteria RepID=DPO3A_BACSU Length = 1115 Score = 729 bits (1881), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/1166 (37%), Positives = 664/1166 (56%), Gaps = 68/1166 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL+VHS YS+++ A LV +A LG +LA+TD + G ++FY A GI PI Sbjct: 3 FVHLQVHSGYSLLNSAAAVEELVSEADRLGYASLALTDDHVMYGAIQFYKACKARGINPI 62 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 +G +V D E L +LA +NTGYQNL + S + G P WL Sbjct: 63 IGLTASVFTDDSELEAYPLVLLAKSNTGYQNLLKISSVLQSKSKGGLKP----KWLHSYR 118 Query: 126 EGLILLSGGRMGDVGRSLLRG-------NSALVDECV----AFYEEHFPDRYFLELIRTG 174 EG+I ++ G G + +LL G ++L + + AFY + P + Sbjct: 119 EGIIAITPGEKGYI-ETLLEGGLFEQAAQASLEFQSIFGKGAFYFSYQP-------FKGN 170 Query: 175 RPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNY 234 + E L +L+E G+PV AT DV +I D A+ AI G L D P Sbjct: 171 QVLSEQIL----KLSEETGIPVTATGDVHYIRKEDKAAYRCLKAIKAGEKLTDA--PAED 224 Query: 235 SPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGD-MSTEDYLV 293 P ++ EEM ++ + PEAL +VEIA++C V V LG+ LP FPT D S +DYL Sbjct: 225 LPDLDLKPLEEMQNIYREHPEALQASVEIAEQCRVDVSLGQTRLPSFPTPDGTSADDYLT 284 Query: 294 KRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKD 353 EGL R F PDE Y RL+ EL VI +M F YFLIV +F++ + + Sbjct: 285 DICMEGLRSR--FGKPDER--------YLRRLQYELDVIKRMKFSDYFLIVWDFMKHAHE 334 Query: 354 NGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQ 413 G+ GPGRGS AGSLVAY L ITD+DP++ LLFERFLNPERVSMPD D+DF +RD+ Sbjct: 335 KGIVTGPGRGSAAGSLVAYVLYITDVDPIKHHLLFERFLNPERVSMPDIDIDFPDTRRDE 394 Query: 414 VIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAK 473 VI++V YG V+QIITFGT+AAKA +RDVGRV G D+++KLIP PGMTL + Sbjct: 395 VIQYVQQKYGAMHVAQIITFGTLAAKAALRDVGRVFGVSPKEADQLAKLIPSRPGMTLDE 454 Query: 474 AFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEE 533 A + PQL + ++ + +ARK+EG+ R+A HA GVV++ +TD PL E Sbjct: 455 ARQQSPQLDKRLRESSLLQQVYSIARKIEGLPRHASTHAAGVVLSEEPLTDVVPLQEGHE 514 Query: 534 GKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDD 593 G + +TQ+ +E GL+K DFLGLR LT+I MI K +D+++I D Sbjct: 515 GIY-LTQYAMDHLEDLGLLKMDFLGLRNLTLIESITSMIEKEE----NIKIDLSSISYSD 569 Query: 594 KKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFID 653 K+F +L + +TT +FQLES GM+ ++KRL+P ED++A+ AL+RPGP+++ + FID Sbjct: 570 DKTFSLLSKGDTTGIFQLESAGMRSVLKRLKPSGLEDIVAVNALYRPGPMEN--IPLFID 627 Query: 654 RKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMG 713 RKHGR + YP HE L+ +LE TYG+I+YQEQ+M IA ++G++LG AD+LRRA+ Sbjct: 628 RKHGRAPVHYP-----HEDLRSILEDTYGVIVYQEQIMMIASRMAGFSLGEADLLRRAVS 682 Query: 714 KKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLW 773 KKK E + ++RS F EG K + + A +++DL+ KFA YGFN+SH+ AY+++ Q + Sbjct: 683 KKKKEILDRERSHFVEGCLKKEYSVDTANEVYDLIVKFANYGFNRSHAVAYSMIGCQLAY 742 Query: 774 LKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVY 833 LKAHYP FM ++T+ + N +K+ + E G++ILPP +N + F V ++G + Y Sbjct: 743 LKAHYPLYFMCGLLTSVIGNEDKISQYLYEAKGSGIRILPPSVNKSSFPFTV-ENGSVRY 801 Query: 834 GIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGP 893 + AIK VG ++ I +AR K F +LFD C R +K +NR++LE LI SGA D G Sbjct: 802 SLRAIKSVGVSAVKDIYKAR-KEKPFEDLFDFCFRVPSKSVNRKMLEALIFSGAMDEFGQ 860 Query: 894 HRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGE 953 +RA L+ S+ AL+ A+ A + D G+ +E I+ Y + P +L E Sbjct: 861 NRATLLASIDVALEHAELFAADD-----DQMGLFLDESFSIKPKYVETEELPLVDLLAFE 915 Query: 954 RETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNR 1013 +ETLG+Y + HP++ + K++ L+ +R ++ L+ + + TK G Sbjct: 916 KETLGIYFSNHPLSAFRKQLTAQGAVSILQAQRAVKRQ--LSLGVLLSKIKTIRTKTGQN 973 Query: 1014 IGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVM-D 1072 + TL D +G +E ++F + + +L + +L +G+ M+ E++ D Sbjct: 974 MAFLTLSDETGEMEAVVFPEQFRQLSPVLREGALLFTAGKCEVRQDKIQFIMSRAELLED 1033 Query: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGA 1132 +D + A + I + Q ++L ++++ L H+ G V+LYY+R + ++ Sbjct: 1034 MDAEK---APSVYIKIESSQHSQEILAKIKRILLEHK-GETGVYLYYER--QKQTIKLPE 1087 Query: 1133 TWRVSPSDRLLNDLRGLIGSEQVELE 1158 ++ ++ ++L L+ L+G + V L+ Sbjct: 1088 SFHINADHQVLYRLKELLGQKNVVLK 1113 >UniRef50_D2R3M9 DNA polymerase III, alpha subunit n=4 Tax=Planctomycetaceae RepID=D2R3M9_9PLAN Length = 1192 Score = 728 bits (1880), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/1140 (37%), Positives = 656/1140 (57%), Gaps = 62/1140 (5%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS+ +FVHL HS YS++DG + L+K+A GM ALA+TD NL G ++FY Sbjct: 1 MSDRKFVHLHCHSHYSLLDGASSVPKLLKRAKEHGMSALALTDHGNLHGALEFYNKAKAL 60 Query: 61 GIKPIVG--------ADFNVQCDLLGDELT-HLTVLAANNTGYQNLTLLISKAYQRGYGA 111 GI PI+G + F + E + HLT+LA N G++NL L S A G+ Sbjct: 61 GINPIIGYEAYIAPGSRFEKKDAANSKEASYHLTLLAQNRQGFKNLIKLASAASLEGF-Y 119 Query: 112 AGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSA---LVD--ECVAFYEEHFPDRY 166 P ID++ L +EG+I LSG + ++LRG+ L D E ++ + F DRY Sbjct: 120 YKPRIDKEILQAHSEGIICLSGCVSSEFSNAVLRGHGGDKELKDAQEIAGWFHKVFGDRY 179 Query: 167 FLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLD 226 FLE++ G + L AV++A+ GLP+VAT+D + + D +A ++ + ++ G Sbjct: 180 FLEIMNNGIDIQRFQLEGAVDVAKKMGLPLVATSDAHYAYAEDAEAQDVLLCVNTGKFRT 239 Query: 227 DPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTG-D 285 D R + + Y+RS EEM E F + +A+A + EIA ++ + LG+ P +P + Sbjct: 240 DTNRMKMENGSFYLRSAEEMYEHFHGLEDAVARSQEIADSVHIDLELGKRHFPVYPIPPE 299 Query: 286 MSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDE----RLETELQVINQMGFPGYF 341 + EDYL + +GL+ER A +E + E E RLE EL VIN++GFP YF Sbjct: 300 KTAEDYLRELCVQGLKERYA-----GDEEMLPGGELSEVVVARLERELNVINKLGFPNYF 354 Query: 342 LIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPD 401 LIV +F++ +++ VP RGSG G+LV +AL ++ + P+++DLLFERFL+ R PD Sbjct: 355 LIVWDFVRHAREQDVP-ATARGSGVGALVCFALYLSHVCPIKYDLLFERFLDLNRKEAPD 413 Query: 402 FDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISK 461 D+DFC ++R +I +V D YG V+QI TFGT+AA+A I+DVGRVLG P V++++ Sbjct: 414 IDIDFCKDRRGDIIRYVKDKYGESNVAQIGTFGTLAARAAIKDVGRVLGIPMERVNKVTA 473 Query: 462 LIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTK 521 ++P + + L+ A E +L +Y D +V+ ++D+A ++EG+ RN G HA VVIA Sbjct: 474 MVPDELHIHLSDALEKSDELKAVYNGDPDVREMLDLAMRIEGLARNVGTHAAAVVIADKP 533 Query: 522 ITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGE 581 +T++ PL +TQ+ DVE AGL+K DFLGLR LTI++ A+E+I + K + Sbjct: 534 LTEYVPLGRVGGKSDIITQWSMGDVEAAGLLKMDFLGLRNLTILSKAVEIIQQTTGKRVD 593 Query: 582 PPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPG 641 P PLDDK++F +LQR ET +FQLES G++DL+++++PD F D+IA AL+RPG Sbjct: 594 P----YKFPLDDKRTFALLQRGETKGIFQLESGGIRDLLQKMKPDHFRDIIATNALYRPG 649 Query: 642 PLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYT 701 PL+ GMV +++ KHGR++ Y H + +L T G+++YQEQVM+I L G Sbjct: 650 PLEGGMVADYVAVKHGRKQAEY-----IHPVCEKILSETNGVMVYQEQVMRILNELGGIE 704 Query: 702 LGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHS 761 L + + +A+ KKK + + K + F +GA + GI + A ++L+ KFAGYGFNKSHS Sbjct: 705 LAASYTVIKAISKKKEDLINKNKVQFLKGAVEKGITEKQADDFWNLIIKFAGYGFNKSHS 764 Query: 762 AAYALVSYQTLWLKAHYPAEFMAAVMTADMD-----NTEKVVGLVDECWRMGLKILPPDI 816 AYAL++Y T +LKAHYP EFMAA+++ D+ + +V +++C RMG+ + PP++ Sbjct: 765 TAYALIAYMTAYLKAHYPVEFMAALLSGDIQGRNFKTKDSLVEHLEDCTRMGITVQPPNV 824 Query: 817 NSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNR 876 N F V DG+I++G+ AIKG G E+I+ AR KGG FR+LFD C R D ++ Sbjct: 825 NESNVDFAVK-DGKILFGLSAIKGCGGSAGESIVAARTKGGPFRDLFDFCERVDATGSSK 883 Query: 877 RVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQ 936 +E LI +GAFD G R+ + A+++ A GQ ++FG EE E Sbjct: 884 GTIETLIKAGAFDCFGARRSQQFAIVERAIQSGQSVAADRKSGQKNLFGAFEEE----EP 939 Query: 937 SYASCQPWPE------QVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTER 990 S A P+ + + E+E LG YL+ HP++++ + + Y D+ P Sbjct: 940 SKAKSTTLPDVPELASKEMATQEKEVLGFYLSSHPLDEHKRTLATYRSHT-TADIGPIPD 998 Query: 991 GKVITAAGLVVAARVMVTKR-----GNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKD 1045 + G+V A ++ TK +R + L+D G + +L+ D + Q+++ D Sbjct: 999 RSEVILGGMVSAIKLSNTKNPKPGAPSRYVMFDLEDTEGTIRCILWPDGYAEMGQMVQPD 1058 Query: 1046 RILIVSGQVSFDDFSGG--LKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQ 1103 IL+V G + D GG + E+M +D+ +Y GL + + R D L ++R+ Sbjct: 1059 AILMVRGAI---DRRGGEEANLVINELMPLDQLSTRYTSGLVVRVDTRDQPDDCLLKIRE 1115 >UniRef50_Q11YX8 DNA polymerase III, alpha subunit n=3 Tax=Bacteria RepID=Q11YX8_CYTH3 Length = 1194 Score = 726 bits (1874), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/1214 (35%), Positives = 666/1214 (54%), Gaps = 94/1214 (7%) Query: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 P F HL VHS +S++DG A LV KA M ALA+TD N+ G+ +F IK Sbjct: 2 PDFAHLHVHSQFSLLDGAASIKGLVGKAVKNEMKALALTDHGNMHGIFQFVAEAVKNNIK 61 Query: 64 PIVGADFNVQCDLLGDELT--------HLTVLAANNTGYQNLTLLISKAYQRGYGAAGPI 115 PIVG +F + D T H +LA N GY+NL L S Y G P Sbjct: 62 PIVGCEFYLVEDRFKKNFTKDNKDVRYHQLLLAKNPEGYKNLIKLCSLGYIEGQYGKYPR 121 Query: 116 IDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGR 175 ID++ +++ ++GLI + +V R++L ++ ++ + F + Y++EL R Sbjct: 122 IDKELILQYHKGLIATTCCLGAEVPRTILAKGEEAGEKAFKWWLDLFGEDYYVELQRHDI 181 Query: 176 PDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDG----------FTL 225 ++ ++LA +P++A+ND ++D D +AH+I + I+ G F+ Sbjct: 182 KEQNIVNEVLIKLARKYQVPIIASNDSHYVDQKDSNAHDILLCINTGEKQSTPTMKDFSD 241 Query: 226 DDP----KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF 281 D+ +R + Q Y +++EEM LF+DIPEA+ NT++I + + + LP + Sbjct: 242 DESMMKGRRFAFANDQFYFKTKEEMSTLFSDIPEAIDNTMQIVDKVEILKLKQDILLPNY 301 Query: 282 --PTGDMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPG 339 P+ + ++YL EG R + PE ERL+ EL I MGF G Sbjct: 302 EIPSTFLDQDNYLQHLTYEGARNRY----------VDVTPEIKERLDFELHTIRTMGFAG 351 Query: 340 YFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSM 399 YFLIV +FI ++ GV +GPGRGS AGS VAY + IT++DP++++LLFERFLNP+R SM Sbjct: 352 YFLIVQDFINKGREIGVLIGPGRGSAAGSAVAYCIGITNIDPIKYNLLFERFLNPDRKSM 411 Query: 400 PDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRI 459 PD D DF E R +VI++V + YG+ V+QI+T+GTMAAK I+DV RVL P + + Sbjct: 412 PDIDTDFDDEGRQKVIDYVVEKYGKKQVAQIVTYGTMAAKMSIKDVARVLDLPLQESNAL 471 Query: 460 SKLIPPDPGMTLA-----------KAFEAEPQLPE--IYEADEEVKALIDM--------- 497 +KL+P PG+ L K E + L E E E VK L +M Sbjct: 472 AKLVPDKPGIELNWVMKGPMKASDKKNEKDKTLTEELTPEDIENVKKLREMLDDEGTLAS 531 Query: 498 -----ARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLV 552 A LEG R G HA G++IAP + D P++ ++ + VTQFD +E AG++ Sbjct: 532 DVLKEALILEGSVRGTGIHAAGIIIAPKDLYDIIPVFTAKDSELLVTQFDGKVIEDAGVI 591 Query: 553 KFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLE 612 K DFLGL+TLTII AL+MI + N +DI IPLDD K+F++ Q+ ET A FQ E Sbjct: 592 KMDFLGLKTLTIIRDALKMIEE----NHGIKIDIDYIPLDDAKTFELYQKGETNATFQFE 647 Query: 613 SRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHES 672 S GM+ + L+PD FED+IA+ AL+RPGP++ + FI RK G+EEI Y Sbjct: 648 SAGMQKHLINLKPDKFEDLIAMNALYRPGPIE--YIPKFIQRKLGKEEIVY-----DLPE 700 Query: 673 LKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAE 732 ++ L TYGI +YQEQVM ++Q L+G+T G AD+LR+AMGKK + K + F EGA Sbjct: 701 MEEYLGDTYGITVYQEQVMLLSQKLAGFTKGDADVLRKAMGKKDRATLDKMKGKFIEGAV 760 Query: 733 KNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMD 792 G++ ++ K++ E FA Y FNKSHS YA V+YQT +LKA+YP+E+MA+V+T ++ Sbjct: 761 AKGLDPKVCEKVWTDWEAFAQYAFNKSHSTCYAFVAYQTGYLKANYPSEYMASVLTHNLS 820 Query: 793 NTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEA 852 N +K+ ++EC RMG+ +L PD+N Y F VN +G+I +G+GAIKGVGEGP++AI++ Sbjct: 821 NFDKISFFMEECQRMGMAVLGPDVNESSYQFSVNSNGQIRFGMGAIKGVGEGPVQAIVDE 880 Query: 853 RNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGP-HRAALMNS--------LG 903 R G F++ FD +R + + ++++ E L ++GA D HRA N L Sbjct: 881 RKANGPFKDFFDFVSRVNLRAVSKKTFESLALAGALDYFTELHRAQYFNVAERETITFLE 940 Query: 904 DALKAADQHAKAEAIGQADMFGVLAE---EPEQIEQSYASCQPWPEQVVLDGERETLGLY 960 A++ + + Q+ +FG + P +I C+ W L E+E +G Y Sbjct: 941 KAIRYGNAFQTEDDSNQSSLFGDSSSAKPAPPKI----TPCEEWGNIEKLKKEKEIVGFY 996 Query: 961 LTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLD 1020 ++GHP++Q+ EI+ + L+++ + +GK +T AG+V V +K G + T++ Sbjct: 997 ISGHPLDQFKLEIDNFC-NCPLENVMSSPQGKDLTVAGIVTKVNVRQSKNGKPFVLFTIE 1055 Query: 1021 DRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGG---LKMTAREVMDIDEAR 1077 D SG L++ LF + K+ + L + G + G K+T +++ + R Sbjct: 1056 DYSGSLDLALFGEDYLKHAHFINIGEFLFMKGSLKPKWGREGELDFKITTTQLL--ADVR 1113 Query: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVS 1137 K + + IS+ QI+ + + + + H+ + + + F ++RV Sbjct: 1114 AKLCKSVNISVNLDQINAITVVEIDRIVSEHKGSCLLYLTLTKNTNEHTVKTFSRSYRVD 1173 Query: 1138 PSDRLLNDLRGLIG 1151 P++ L++L L G Sbjct: 1174 PNNVFLSELNKLEG 1187 >UniRef50_B0MXW1 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MXW1_9BACT Length = 1287 Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust. Identities = 451/1225 (36%), Positives = 689/1225 (56%), Gaps = 99/1225 (8%) Query: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 P FVHL VH+ YS++DG A +PL+K+A ALGM ALAITD N+ G+ F+ AGIK Sbjct: 70 PDFVHLHVHTQYSILDGAAAISPLIKRAKALGMKALAITDHGNMYGVKNFHDVATDAGIK 129 Query: 64 PIVGADFNVQCDLL---GDELT--HLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDR 118 PI+G + V + DE HL +LA N TGY NL ++S ++ G+ P ID+ Sbjct: 130 PILGCETYVVRNRFEKDKDEKAGDHLILLAKNLTGYHNLCKIVSYSFTEGF-YYKPRIDK 188 Query: 119 DWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR--TGRP 176 L + +EGLI S G+V ++++R + ++ V +++ F D Y+LEL +G P Sbjct: 189 KLLEQYHEGLICCSACLGGEVPQAIMRNDMEEAEQVVRWFKSIFGDDYYLELQLHPSGDP 248 Query: 177 DEESYLH--------AAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228 +++ ++ A +EL+ G+ + +NDV FI + D AH+ + ++ G LDDP Sbjct: 249 RKDADVYENQLLVNKALLELSAKCGVKYICSNDVHFILAEDAVAHDHLICLNTGRDLDDP 308 Query: 229 KRPRNYSPQQYMRSEEEMCELFADIPEALANT------VEIAKRCNVTVRLGEYFLPQFP 282 R R Y+ Q+Y++S EEM +LF D PEALA T VE K + + P+F Sbjct: 309 NRMR-YTFQEYLKSPEEMAQLFPDHPEALATTLEIADKVEEYKLTHAPLMPNFPPPPEFH 367 Query: 283 TGDMSTEDYLVKRAKEGLE----------ERLAFLFPDEEERLKR--------------- 317 + LVK+ ++ E E L + +ER ++ Sbjct: 368 MPFEELRESLVKKIEDQEELARIDACHSVEELDAWAEESKERSEKLMTAKQFCYLKDLTY 427 Query: 318 -----------RPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGA 366 E ++R+ EL I MGFPGYFLIV ++I+ +++ GV VGPGRGS A Sbjct: 428 KGAHLRYGAELSEEVEKRIRYELSTIEWMGFPGYFLIVWDYIRAAREMGVSVGPGRGSAA 487 Query: 367 GSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDA 426 GS+VAY LKIT++DPL++DLLFERFLNPER+S+PD DVDF + RD V+ + YG+ Sbjct: 488 GSVVAYCLKITNIDPLKYDLLFERFLNPERISLPDVDVDFDEDGRDDVLHYCVHKYGQKR 547 Query: 427 VSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIP----PD--PGMT-LAKAFEAEP 479 V+QI+TFGTMA K IRDV RV DR++KL+P PD G T ++ P Sbjct: 548 VAQIVTFGTMAPKLAIRDVARVQKLALSESDRLAKLVPDKVTPDKKAGETPFDFCYKESP 607 Query: 480 QLPEIYEA-DEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538 +L E+ ++ ++ + A KLEG R G HA GV+I + +FAP+ ++ V Sbjct: 608 ELAAERESPNQLIRNTLKYAEKLEGSIRQTGVHACGVIIGQDDLENFAPMAIAKDADLNV 667 Query: 539 TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598 +F+ +VE GL+K DFLGLRTL+II A+ + + +DI IPLDD +++ Sbjct: 668 VEFEGKEVESVGLIKMDFLGLRTLSIIKDAVTNVKNVHGID----VDIDNIPLDDAPTYE 723 Query: 599 MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658 + R +TT +FQ ES GMK ++ L+P+ FED+IA+ AL+RPGP++ + NFI RKHG Sbjct: 724 VFSRGDTTGLFQFESPGMKKHLRNLKPNRFEDLIAMNALYRPGPME--YIPNFIARKHGL 781 Query: 659 EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718 E ++Y D+ ++ L TYGI +YQEQVM ++Q L+G+T G AD LR+AMGKK+ Sbjct: 782 EPVTY-DIA----DMEEYLSDTYGITVYQEQVMLLSQKLAGFTGGEADTLRKAMGKKQRA 836 Query: 719 EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778 + K + F EG K G +A++ KI+ E FA Y FNKSHS YA ++YQT +LKAHY Sbjct: 837 VLDKMKPKFIEGCSKRGHDAKICEKIWGDWEAFASYAFNKSHSTCYAYIAYQTGYLKAHY 896 Query: 779 PAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAI 838 P+EFMAA+++ ++ + +++ ++EC RMG+++L PDIN L +F N G++ +G+ A+ Sbjct: 897 PSEFMAALLSRNLSDIKQITLYMNECKRMGIRVLGPDINESLNNFSSNKAGDVRFGLAAV 956 Query: 839 KGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRL-GPHRAA 897 KGVGE +E+I+ RNK G F++++D R + +NR+ LE + +G FD + G HR Sbjct: 957 KGVGEAAVESIVAERNKNGKFKDIYDFFERVNYTAVNRKCLENIAYAGGFDSISGFHRCK 1016 Query: 898 LMNS-LGDA---------LKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQ 947 + L D+ ++ + + Q +FG + +CQ W Sbjct: 1017 FFGTDLRDSSSTTFIEQLVRYGQRFQSEKDNAQQSLFGGGEGVVDIQHPVIPACQDWSTL 1076 Query: 948 VVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTE--RGKVITAAGLVVAARV 1005 L ERE +GLYL+ HP++ Y I R + +L D+ E RG+ I AG+V+A + Sbjct: 1077 ETLGKEREMIGLYLSAHPLDDY-AVIIRNMCKTQLSDLDNLESLRGQEIAVAGMVIATQN 1135 Query: 1006 MVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVS---FDDFSGG 1062 +VTK G G TL+D +G E LF+ + +++ L D L + G+V ++D Sbjct: 1136 LVTKTGKPWGKFTLEDYNGTHEFALFSKDYENFRKYLFNDYFLFIRGKVQPKPYNDKELE 1195 Query: 1063 LKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSL-EPHRSGTIPVHLYYQR 1121 K+T+ ++ + E R+ + + I L I +++ L + E S T+ V++Y + Sbjct: 1196 FKITS--MVQLSEMRDTMIKEMYIQLAIEDITREMIEELTHRIKESEGSTTLRVNVYDRD 1253 Query: 1122 ADARARLRFGATWRVSPSDRLLNDL 1146 A + F +VS + L++ L Sbjct: 1254 AQVSVNM-FSKRHKVSLTSNLVSFL 1277 >UniRef50_C3XGX7 DNA polymerase subunit III n=1 Tax=Helicobacter bilis ATCC 43879 RepID=C3XGX7_9HELI Length = 1268 Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/1149 (36%), Positives = 659/1149 (57%), Gaps = 101/1149 (8%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F HL +H++YS++DG K L K+ LGM ++A+TD N+ G ++FY AGIKPI Sbjct: 9 FTHLHLHTEYSLLDGANKLDVLAKRIKELGMNSVAMTDHGNMFGAIEFYKIMKKAGIKPI 68 Query: 66 VGADFNVQC-DLLGDELT-----HLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRD 119 +G + + + LGD+ H+ + A N GY+NL L S+++ +G+ I ++ Sbjct: 69 IGIEAYIHNKEDLGDKSPNTPKFHICLYAKNEEGYKNLMYLSSQSFIQGFYRTSRI-NKK 127 Query: 120 WLIELNEGLILLSGGRMGDVG---------------RSLLRGNSAL--VDECVAFYEEHF 162 L E ++G+I S G++ + ++ G E + Y++ F Sbjct: 128 ILREYSKGIICSSACLNGEISWNLNLSPYMDSKKRDKKIIMGAKGYDGAKEAIHEYQDIF 187 Query: 163 PDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDG 222 D +++E++R G D+ + + L+ G ++ATND + + D E + I Sbjct: 188 GDDFYIEIMRHGIADQRFIDNDLLRLSLETGAKLIATNDAHYTNKEDSSMQEAAMMIAMA 247 Query: 223 FTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFP 282 ++DPKR R+ + Y++S ++M +LF DIPEA+ NT EIA +C++T+ L + P P Sbjct: 248 TDINDPKRLRHTVQEFYIKSPKQMLDLFMDIPEAVFNTQEIADKCDLTIDLKDDKNPPTP 307 Query: 283 TG-----------DMSTED---YLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETE 328 ++ +D Y + K+GL +RL + D+ E Y +RL+ E Sbjct: 308 PSFKFAKEYAENEGLTIQDEAEYFAYKCKQGLVKRLEQVEKDKHEI------YHKRLQEE 361 Query: 329 LQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLF 388 + +I QM FPGY LIV +FI ++K N +PVGPGRGS AGSLVAY L+ITD+DP++++LLF Sbjct: 362 IDIITQMKFPGYMLIVWDFINYAKQNKIPVGPGRGSAAGSLVAYCLEITDVDPIKYNLLF 421 Query: 389 ERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRV 448 ERFLNPER+SMPD D DFC +R ++ E++ YG V+Q+ITFG M A+ VIRDV R+ Sbjct: 422 ERFLNPERISMPDIDTDFCQRRRPEMFEYMKAKYGEYNVAQVITFGKMLARGVIRDVARI 481 Query: 449 LGHPYGFVDRISKLIPPDPGMTLA----------KAFEAEPQLPE-IYEADEE------- 490 G DR +KLIP G+TL A+E EP++ E I E D + Sbjct: 482 YGMSIPNADRFAKLIPSKLGITLKGYNKNGNFIEGAYELEPKIQELITEGDNDRDEKNRG 541 Query: 491 -VKALIDMARKLEGVTRNAGKHAGGVVIAPTK-ITDFAPLYCDEEGKHP-VTQFDKSDVE 547 + + +MA +LE + RN GKHA +V+ K + PLY E K VTQ+ +E Sbjct: 542 LARKVWEMALRLEKLNRNTGKHAAALVVDSEKELWHKVPLYVSERTKGVMVTQYSMKYLE 601 Query: 548 YAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTA 607 L+KFDFLGL+TLT+I AL++I ++++ + ++D+K + L+ T Sbjct: 602 PVDLIKFDFLGLKTLTVIQDALDIIK----DTNNIDINLSTLDVNDEKVYRTLRSGNTLG 657 Query: 608 VFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQ 667 +FQLES GM++ +RLQP +D IAL+ALFRPGP+ SGM D +I+RKHGR +SY Sbjct: 658 IFQLESSGMQEFNRRLQPSGIDDAIALLALFRPGPMDSGMSDEYINRKHGRSPVSYT--- 714 Query: 668 WQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVF 727 + L+P+L+ TYG+I+YQEQVMQI QV+ G++LG AD++RRAMGKK + MA+ R+ F Sbjct: 715 --FKELEPILKNTYGVIVYQEQVMQIVQVIGGFSLGEADLVRRAMGKKDAQIMAENRTKF 772 Query: 728 AEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVM 787 A+GAEKNG + A ++FD + KFA YGFNKSHSAAY ++++QT +LK +Y EFMAA++ Sbjct: 773 ADGAEKNGFDRTKAEELFDQIAKFAEYGFNKSHSAAYGILTFQTAYLKTYYEHEFMAAML 832 Query: 788 TADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHV----NDDGEIVYGIGAIKGVGE 843 +++ E V +DE MG++ILPP +N+ +F V N +IV+G+ AIKG GE Sbjct: 833 SSESHKIEAVATYIDEARAMGIEILPPHVNTSQTNFSVIIDSNGKKKIVFGLNAIKGAGE 892 Query: 844 GPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLG 903 G +++II+ R + G F+ L D + D K+++++VLE L+ SG+ D LG RA+++++L Sbjct: 893 GALQSIIDDRKQKGAFKNLEDFITKADFKRISKKVLEPLVKSGSLDNLGYTRASMLDNLD 952 Query: 904 DALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPE---QVVLDGERETLGLY 960 + ++ + G +FG PE +P PE + +L+ E E+LG+Y Sbjct: 953 YICDLGRRMSRERSGG--GLFGAEELCPE------LQIKPLPELHNKSLLEYEYESLGIY 1004 Query: 961 LTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLD 1020 L+GHP++ + EIE+ V++ ++ G + G + + ++K G + Sbjct: 1005 LSGHPLDDFRSEIEQIKNVVKIAELENIADGSRVMLIGKLEDLQRKMSKNNRTYGTAKIM 1064 Query: 1021 DRSGRLEVMLFTDALDKYQQL-----------LEKDRILIVSGQVSFDDFSGGLKMTARE 1069 D SG+ + LF D L+ LEK+R ++ G+ + S +++ E Sbjct: 1065 DFSGKQPLTLFEDQLNLLDSFDLSNPIGIVGKLEKER-MVTEGEDGSAEVSYKIEIRVHE 1123 Query: 1070 VMDIDEARE 1078 + + +E Sbjct: 1124 IHTLQSCKE 1132 >UniRef50_C6D8C3 DNA polymerase III, alpha subunit n=5 Tax=Firmicutes RepID=C6D8C3_PAESJ Length = 1220 Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust. Identities = 431/1080 (39%), Positives = 636/1080 (58%), Gaps = 32/1080 (2%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL VHS+YS++DG A+ LV +AA GM ALA+TD + G + FY A GIKPI Sbjct: 8 FVHLHVHSEYSLLDGAARIRDLVARAAEQGMKALALTDHGVMYGAIPFYRACLARGIKPI 67 Query: 66 VGADFNVQCDLLGDELT-------HLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDR 118 +G + ++ T HL +LA N TGY+NL L+S + G+ P ID Sbjct: 68 IGCEMYFTAGSRFEKGTRKDNPIYHLILLAKNETGYRNLMKLVSIGHLEGFHYK-PRIDP 126 Query: 119 DWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDE 178 + L +EGL+ LS G++ + LL Y+ F D ++LEL G D+ Sbjct: 127 EVLEAHSEGLVCLSSCLHGEISQHLLHDRREEALTAAMRYKRIFGDDFYLELQDHGMLDQ 186 Query: 179 ESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQ 238 + A +ELA G+ + ATNDV ++ D ++ + I G ++DD R + + Q Sbjct: 187 KKVAAAMIELARETGIKLTATNDVHYLTPEDAAVQDVLICIGTGKSVDDTDRMKMGTDQL 246 Query: 239 YMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF-PT-GDMSTEDYLVKRA 296 YM+S EEM LF +PEA+ +T EIA +C++ + G LP F P G M++ YL + Sbjct: 247 YMKSGEEMELLFRHVPEAIRHTAEIADKCSLELTFGRAALPVFRPVPGGMTSTAYLAELC 306 Query: 297 KEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGV 356 + GL R A L P E R + + RL EL VI MGF YFLIV +F++++ + G+ Sbjct: 307 RSGLASRYAGL-PQWSEDPAYREQAEARLAYELSVIENMGFSDYFLIVWDFVRFAHEQGI 365 Query: 357 PVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIE 416 GPGRGS AGSLVAY L+ITD+DPL++ LLFERFLNPER++MPD D+DF E+RD+VI Sbjct: 366 RTGPGRGSSAGSLVAYVLRITDVDPLKYKLLFERFLNPERITMPDIDIDFNDERRDEVIA 425 Query: 417 HVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFE 476 +V+ YG + V+QIITFGTMAAKA +RDVGR + P+ VDR +K+IP +TL +A Sbjct: 426 YVSAKYGDEHVAQIITFGTMAAKAAVRDVGRAMNVPFAEVDRAAKMIPNQLHITLEEALR 485 Query: 477 AEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKH 536 L E + A+I MA K+EG+ R+A HA GVVI+ +TD+ PL E + Sbjct: 486 ISEGLREACQRQPRTDAMIKMALKVEGMPRHASTHAAGVVISGGPLTDYVPLQAGSE-RT 544 Query: 537 PVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKS 596 +TQ+ +E GL+K DFLGLRTL+I+ +L + K +D +P +D + Sbjct: 545 ALTQYSMEHLEAVGLLKMDFLGLRTLSIVERSLAWVKGLYGKE----IDFRKVPDNDPDT 600 Query: 597 FDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKH 656 + ML R ET +FQLES G++ ++K ++P FED+++++AL+RPGP++ + N+I KH Sbjct: 601 YAMLGRGETMGIFQLESSGVRRVLKEMKPSEFEDIVSVLALYRPGPME--FIPNYIQGKH 658 Query: 657 GREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKK 716 G + YP H SL+P+L TYGII+YQEQ+MQIA ++G++LG AD+LRRA+ KKK Sbjct: 659 GLAPVKYP-----HPSLEPILSDTYGIIVYQEQIMQIASAMAGFSLGEADLLRRAVSKKK 713 Query: 717 PEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKA 776 E + +QR+ F +G+ G +E A ++D++ +FA YGF ++H+AAY ++++QT WLKA Sbjct: 714 REVLDEQRAHFVKGSVSEGYTSEDANLVYDMIVRFADYGFPRAHAAAYGVLAFQTAWLKA 773 Query: 777 HYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDIN-SGLYHFHVNDDGEIVYGI 835 HYP FMA+++ + N K VDEC RMG+++LPPD+N SG+ V +G + +G+ Sbjct: 774 HYPIPFMASMLASVTGNQRKTAEYVDECRRMGIEVLPPDVNESGVTFTPV--EGAVRFGL 831 Query: 836 GAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHR 895 AIK VG IEA IE + F L DLC R D + +N+RVLE LI +GA + L HR Sbjct: 832 AAIKNVGTQAIEA-IEKERRERPFDSLLDLCRRVDLRVVNKRVLESLIQAGALESLPGHR 890 Query: 896 AALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERE 955 A + +L + ++AA + K Q ++FG +E + + +P+ L+ ERE Sbjct: 891 AQQLAALEETVEAALKWRKEREELQIELFGF--DEVQNWDVELPDIRPYSTGEQLELERE 948 Query: 956 TLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIG 1015 LGLYL+GHP++ +++E +G R ++ G VV+ + K+GN +G Sbjct: 949 LLGLYLSGHPLDAVEEQLEP-LGLDRFIELGEAAEGAAAFIGARVVSLKPFTNKKGNAMG 1007 Query: 1016 ICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDE 1075 ++DR R E ++F + L K + I+ V D K+ +V+ I E Sbjct: 1008 FIEIEDRVMRAEGVVFPAVWKRCGDRLVKGGLAIIHATVQHQDED--FKLIIEDVVPIQE 1065 >UniRef50_C1XIK2 DNA polymerase III, alpha subunit n=2 Tax=Meiothermus RepID=C1XIK2_MEIRU Length = 1257 Score = 724 bits (1868), Expect = 0.0, Method: Compositional matrix adjust. Identities = 444/1145 (38%), Positives = 642/1145 (56%), Gaps = 91/1145 (7%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVK--KAAALGMPALAITDFTNLCGLVKFYGAGHGAGI 62 +F HL H+ +S++DG A+ L+K K + P LA+TD N+ G V+FY G+ Sbjct: 21 KFAHLHQHTQFSLLDGAARLKDLLKWVKQVSPEEPMLAMTDHGNMFGAVQFYKYATELGV 80 Query: 63 KPIVGADFNVQCDLLGDE---------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 KPI+G + V + D HLT+LA N GYQNL+ L S+AY G+ Sbjct: 81 KPIIGYEAYVAAESRFDRKQGKGLDGGYFHLTLLAQNMEGYQNLSRLASRAYLEGF-YGK 139 Query: 114 PIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIR 172 P IDR+ L E N G+I LSG ++ + +L+ ++ + Y F P+RYF+E+ Sbjct: 140 PRIDREILREHNAGIIALSGCLGAEIPQFILQERFEDAEKRLQEYLAIFGPERYFIEIQN 199 Query: 173 TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 G ++ E A+ GL +VATND ++ D +AH + +A+ T DDP R + Sbjct: 200 HGLAEQHKVNRVLKEFADKYGLGLVATNDGHYVKKDDAEAHAVLLAVQSKATWDDPNRWK 259 Query: 233 NYSPQQYMRSEEEMCELFAD--------IPEALANTVEIAKRCNVTV--RLGEYFLPQFP 282 + Y++S +EM + F D + E N+V I + C V + + +Y +P++P Sbjct: 260 FPCDEFYVKSPQEMRQTFEDERNLWGSRMDELFDNSVNIGRMCEVELVPKKVQYRIPKYP 319 Query: 283 TGDMSTE---------DYLVKRAKEGLEERLAFLF-----------------------PD 310 + TE + L+KR + + L F D Sbjct: 320 LPEGRTEVVYFRELTFNGLLKRYPDRVTPELYREFLRKLGRPVPHGDGEVLALELARIED 379 Query: 311 EEERLKRRPEYDERLE-----------TELQVINQMGFPGYFLIVMEFIQWSKDNGVPVG 359 E PE E ++ EL V+ +MGFPGY LIV +FI W+K+NG+ VG Sbjct: 380 LEATRAHLPELREGIQWDGWAILSRAIYELTVVERMGFPGYLLIVSDFINWAKNNGISVG 439 Query: 360 PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVA 419 PGRGS AGSLV YA +IT++DPLE++LLFERFLNP RVSMPD D DF +R +VIE+V Sbjct: 440 PGRGSAAGSLVTYATRITNIDPLEYNLLFERFLNPARVSMPDIDTDFSDVRRGEVIEYVR 499 Query: 420 DMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEA 477 YG + V+QI TFGT+A+KA I+D RV G P D ++KLIP G M L KA E Sbjct: 500 QRYGDEMVAQIGTFGTLASKAAIKDAARVFGLPVKKADELAKLIPVTFGKPMPLDKAIET 559 Query: 478 EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHP 537 P L E D VK ++++A+KLEG++R + HA GVVI+ + D+ PL + Sbjct: 560 IPDLRAEMEKDPLVKRVLEVAQKLEGLSRQSSVHAAGVVISDVPLRDYIPLMRAGDTGAK 619 Query: 538 VTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSF 597 VTQ+D VE G +K DFLGLRTL+ ++ +I + + LD +P+DD K+F Sbjct: 620 VTQYDMGSVEALGFLKMDFLGLRTLSFLDECKRIIKESKGVE----LDYDNLPIDDAKTF 675 Query: 598 DMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHG 657 ++L R ET VFQL+S GM ++ L+P +D+IAL AL+RPGP+++ + +I R HG Sbjct: 676 ELLGRGETKGVFQLDSAGMTSAVRGLKPRRIQDIIALGALYRPGPMEN--IPTYIRRHHG 733 Query: 658 REEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKP 717 REE+SYP + ++P+LE TYGI +YQEQ+MQIA ++GY+LG AD+LRRAMGKKK Sbjct: 734 REEVSYPQFPNAEKFIRPILEETYGIPVYQEQIMQIATAVAGYSLGEADLLRRAMGKKKM 793 Query: 718 EEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAH 777 EEM KQR+ F EGA KNGI AE A ++FDL+E FA YGFNKSH+AAYA+++YQT ++KAH Sbjct: 794 EEMVKQRAQFKEGAAKNGIPAEEADRLFDLLEAFANYGFNKSHAAAYAILTYQTAYVKAH 853 Query: 778 YPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGA 837 +P EF AAV+T + +++KV + G+++LPPDIN + F + +++G+ A Sbjct: 854 FPVEFFAAVLTVERHDSDKVAEYIRAARTAGVEVLPPDINQSGFSFRALEKS-VLFGLSA 912 Query: 838 IKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAA 897 +K VGE P E I+ R +GG ++ L D R D N+RV+E LI +GAFD GP R Sbjct: 913 VKNVGETPTELILRERERGGPYKSLPDFLRRLDGTVANKRVVESLIKAGAFDAFGP-RGP 971 Query: 898 LMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETL 957 ++ +L D LK A + G +FG E +E + L E+E L Sbjct: 972 MLAALDDLLKWAQAEREQAQSGMMGLFG------ESLEPVIPAVPQLDAITQLRMEKEAL 1025 Query: 958 GLYLTGHPINQY--LKE-----IERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKR 1010 G+Y+TGHP+++Y L+E IE ++ + AG+V TK Sbjct: 1026 GIYVTGHPLSRYQGLREAASCTIEELPQA--FAELKGNRNRARLLLAGMVEGIVRKPTKS 1083 Query: 1011 GNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREV 1070 G + TL D +G +EV+ F A DK + +D ++V+ +V D L++ A+EV Sbjct: 1084 GGMLVRFTLADETGAVEVVAFGRAYDKISPRIAEDAAVLVAVEVEPDGEGETLRVVAQEV 1143 Query: 1071 MDIDE 1075 E Sbjct: 1144 FPYHE 1148 >UniRef50_B4S7C7 DNA polymerase III, alpha subunit n=11 Tax=Chlorobiaceae RepID=B4S7C7_PROA2 Length = 1190 Score = 723 bits (1866), Expect = 0.0, Method: Compositional matrix adjust. Identities = 427/1210 (35%), Positives = 661/1210 (54%), Gaps = 75/1210 (6%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS FVHL H+ YSM L GM ++A+TD++ + + + + A Sbjct: 1 MSNIDFVHLHTHTHYSMQSSPIFPKELFSACKKAGMESVAVTDYSAMFNMPELFSLASDA 60 Query: 61 GIKPIVGADFNVQCDLLGDELTH---------LTVLAANNTGYQNLTLLISKAYQRGYGA 111 G+K I+G+ + LL + H L +L N GY+NL +L+S+A + G+ Sbjct: 61 GVKLIIGS----EVYLLEQDAHHNGRHSVSPSLILLVKNEEGYKNLCILLSRAAREGFVN 116 Query: 112 AGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELI 171 A P +D L E + GLI LSG G +GR+LL GN AFY + F D ++LEL Sbjct: 117 ATPHVDSSLLKEYHAGLICLSGYYAGRIGRALLAGNRDEAASFTAFYHDIFGDDFYLELQ 176 Query: 172 RTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRP 231 R ++ + LAE G+ +VATN+V ++ D + VAI L Sbjct: 177 RHFATFDDQLNSDTIALAEQHGVQLVATNNVHYLQKKDAGRYRAMVAIRTKERLSSSNLQ 236 Query: 232 RNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF--PTGDMSTE 289 + + Y +S +EM LF++ L+NT IA +C+ E LP F P G Sbjct: 237 CLPNSEHYFKSSDEMASLFSNEHHELSNTAAIAAKCSYVFCQQEPRLPHFLLPEGFSDEA 296 Query: 290 DYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQ 349 +YL EG E+ A D E + + ++R+E EL VI MGF YFLIV + I Sbjct: 297 EYLRHLTYEGAREKYA----DPESQGLTWQQVEDRIEKELGVIISMGFSSYFLIVSDLIA 352 Query: 350 WSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCME 409 S+ G VGPGRGS AGS++AY IT +DPL++ LLFERFLNPER+SMPD D+DF Sbjct: 353 ASRRLGYSVGPGRGSAAGSIIAYLTGITRIDPLKYKLLFERFLNPERLSMPDIDIDFTPV 412 Query: 410 KRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGM 469 + +V+++ D YG D+V++++ GT+ A+A IRD GRVL P VDR++KL+P PG Sbjct: 413 GKQRVLDYTVDKYGDDSVAKVVAIGTLGARAAIRDAGRVLEVPLQEVDRLAKLVPSKPGT 472 Query: 470 TLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLY 529 TL + + +L E+ E+ + L+D A LEG RN HAG VVI + + PLY Sbjct: 473 TLQQGLDEVNELRELVESSSQNSTLMDYALALEGRARNVSMHAGAVVITDGPLEEQVPLY 532 Query: 530 C---------------------------DEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTL 562 + + K VTQFDK+ +E AGL+K D+LGL TL Sbjct: 533 VSNKIETEARKFADEYNEDELERGALKSNSDEKQVVTQFDKNWIETAGLLKIDYLGLETL 592 Query: 563 TIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKR 622 +I+ L +I KR A+ +++ +P+D+KK+F + Q + +FQ ES+GM++ + + Sbjct: 593 AVIDETLHLIKKRHAE----VIELETVPMDNKKAFRIFQEGKMAGIFQFESQGMQNYMMQ 648 Query: 623 LQPDCFEDMIALVALFRPGPLQS------GMVDNFIDRKHGREEISYPDVQWQHESLKPV 676 LQP D+IA+ AL+RPG L + VD F+DRKH RE I Y H L+ + Sbjct: 649 LQPTQIGDIIAMSALYRPGALNARVDPKRNAVDLFVDRKHNREPIDY-----MHPMLEEI 703 Query: 677 LEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGI 736 L+ TYG+I+YQEQVMQI+QV+ G++L AD LR+AMGKKKPE M K ++ F EGA G+ Sbjct: 704 LKETYGVIVYQEQVMQISQVMGGFSLAKADNLRKAMGKKKPEIMQKFKADFVEGAVNQGV 763 Query: 737 NAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEK 796 + +LA +IFDL+ +FAGYGFNKSHSAAY +++Y T +LKAHYP EFM A++ +++ +T + Sbjct: 764 HDKLANRIFDLMAEFAGYGFNKSHSAAYGVLAYWTAYLKAHYPGEFMTAILNSEIGDTAR 823 Query: 797 VVGLVDECWRMGLKILPPDINSGLYHFHVND-DG--EIVYGIGAIKGVGEGPIEAIIEAR 853 + L DE + ILPPDIN+ F ++D DG I G+ AIK VG + Sbjct: 824 MKHLTDEARSFNISILPPDINTSDALFSIDDVDGLPAIRVGLSAIKQVGNAARAVVTSRL 883 Query: 854 NKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHA 913 + + LFDL A D + +NR+ LE LI++GA D + P+RA L+ ++ A+K Sbjct: 884 RRKKEYVNLFDLTASVDLRAMNRKALECLILAGALDSIDPNRAKLIANIDKAIKFGQLQN 943 Query: 914 KAEAIGQADMFG--VLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLK 971 ++ +GQ F + + P P+ L E++ +G YL+ HP++ + + Sbjct: 944 RSVTLGQCGFFSDDNAGGMQDSLYPDMDPADPMPDSEKLQAEKKLVGFYLSRHPLDPFRR 1003 Query: 972 EIERYVG-GVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVML 1030 + E + + +++ P+ + K+I G+VV+ + ++GN++ ++D SG+ + + Sbjct: 1004 DWEAFANLHLDARNVQPSRQYKII---GVVVSTKPHQDRKGNQMLFGVIEDFSGKADFTV 1060 Query: 1031 FTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLT- 1089 F ++++ L++ D +++ + + G LK+ RE++ + + RE + + + Sbjct: 1061 FASVYEQFRHLIKVDEAVMLVAEA--ESSGGALKLLVREIVPVRKVRENCIDKVVLKINA 1118 Query: 1090 DRQIDDQLLNRLRQSLEPHRSGT-IPVHLYYQRADARARLR-FGATWRVSPSDRLLNDLR 1147 D +D + L +R+ E H+ GT + + Q A+ LR F + SD L+ L Sbjct: 1119 DDPLDVEKLAAVREVFETHKGGTAVDFEVKVQSAENIEMLRVFARATPIDASDETLSKLE 1178 Query: 1148 GLIGSEQVEL 1157 ++G + V + Sbjct: 1179 KILGPDNVAI 1188 >UniRef50_D1NB43 DNA polymerase III, alpha subunit n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1NB43_9BACT Length = 1187 Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/1126 (39%), Positives = 645/1126 (57%), Gaps = 50/1126 (4%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL +H+ YSM+DG L++ A M A+AITD + G+ +F+ GAGI PI Sbjct: 5 FVHLHLHTHYSMLDGACTVKGLLQLAQEHEMNAMAITDHGYMGGVEEFHQVLSGAGINPI 64 Query: 66 VGADFNVQCDLLGDELT---------HLTVLAANNTGYQNLTLLISKAYQRGYGAAGPII 116 +G + V + D + HL +L N GY +L ++S A + G+ P I Sbjct: 65 IGVEAYVAPGDMRDFDSNKPFNRGGFHLILLCENEDGYSSLCKMMSAANKDGFHYK-PRI 123 Query: 117 DRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRTGR 175 D++ + + ++GLI S G++ + L+G+ ++ + Y + F D +F+EL+ G Sbjct: 124 DKELMRQYHKGLICTSACIGGEISQYYLQGDVKRAEQALGEYLDIFGRDNFFIELMDHGM 183 Query: 176 PDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYS 235 +E VELA+ L ++ATNDV ++ D +AHEI + I G L + K R + Sbjct: 184 EEERKCNKFLVELAKKNDLRLIATNDVHYMRKEDAEAHEIMLCIQTGARLAE-KHFRFPA 242 Query: 236 PQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVR----LGEYFLPQF--PTGDMSTE 289 P+ Y +SE EM ELF ++PE++ NT IA+RC++ + Y P+F P G ++ Sbjct: 243 PEFYFKSEAEMKELFRELPESITNTRLIAERCSMKFHYVPEVNHY--PKFYMPDGRLADR 300 Query: 290 DYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQ 349 + L + + +E R F E R+ + ER+E EL VI + GF YF +V +FI+ Sbjct: 301 NDLREVCYDNMEYRYGFDPRKTPELDDRQKKILERMEYELGVIEKTGFISYFFVVSDFIR 360 Query: 350 WSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCME 409 +K +PVGPGRGSGAGSLVAY +ITD+DPL F+L FERFLNPERVS PDFDVDFC Sbjct: 361 HAKGQDIPVGPGRGSGAGSLVAYLTRITDIDPLRFNLFFERFLNPERVSPPDFDVDFCER 420 Query: 410 KRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGM 469 +R +VI++V YG D+V+QI T+G + AKAV++DV RVLG + F +R+SK+IP DP M Sbjct: 421 RRGEVIDYVRGRYGFDSVAQICTYGQLKAKAVVKDVARVLGCDFEFGNRLSKMIPEDPKM 480 Query: 470 TLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLY 529 TL KA E +L E E D + + A+ LEG+ R G HA GV+I ++ + PL Sbjct: 481 TLDKAVEQNKELAEKIETDPMIAKVWKFAKVLEGLNRQTGIHAAGVIIGDQRLDNLVPL- 539 Query: 530 CDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAI 589 V F E GL+K DFLGL+TLTII AL+MI K +D I Sbjct: 540 ARSASDSMVVPFPAHPCEEQGLLKMDFLGLKTLTIIKDALDMIKKDYGI----VIDTMKI 595 Query: 590 PLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVD 649 PLDD K+F+MLQR +T AVFQLES GM++L + + E +IAL+A++RPGP+Q + Sbjct: 596 PLDDPKTFEMLQRGDTVAVFQLESGGMQNLCRSFGVETLEHIIALLAIYRPGPMQ--FIP 653 Query: 650 NFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLR 709 +FI RK G E+I Y H ++ L+ TYGI+LYQEQ+MQ+ QVL+G+TLGGAD+LR Sbjct: 654 DFIRRKKGEEKIIY-----DHPLMEDCLKETYGIMLYQEQIMQVVQVLAGFTLGGADILR 708 Query: 710 RAMGKKKPEEMAKQRSVFAEGA-EKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVS 768 RA+GKKK + +AKQ+ F +G E N I+ +LA +I++ ++ FAGYGFNKSHSAAY V Sbjct: 709 RAIGKKKVDVLAKQKEKFFKGCKETNNIDEKLADQIWEKIKLFAGYGFNKSHSAAYGFVC 768 Query: 769 YQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDD 828 YQT +LKA+YP +FMAA++ ++++ E++ +++ C MG+ +LPPD+NS F D+ Sbjct: 769 YQTAYLKANYPVQFMAAILNGEIESAERIAFMINTCKEMGINVLPPDVNSSDIRFST-DN 827 Query: 829 GEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAF 888 G I +G+GAIKGVGE IIE+R K G F D C R + +N R+LE L +GA Sbjct: 828 GNIRFGLGAIKGVGEVAASQIIESRQKDGKFETFLDFCERCGS-NVNSRMLEHLTRAGAL 886 Query: 889 DRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPE-- 946 D LG R+ ++ + A A+ A GQ +F +L S P P+ Sbjct: 887 DGLGLRRSQILAIAEPMMAFAAGRARDRAAGQGSLFDLLDGGDADDACSV----PIPDIP 942 Query: 947 ----QVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVA 1002 + +L E+E LG Y+TGHP++ Y E+ R V ++ + I AG+V Sbjct: 943 EFDKEDILKSEKELLGFYVTGHPLDPY-AELVRTYSTVPIRSLEELNDNAQIRIAGMVNT 1001 Query: 1003 ARVMVTKR-GNRIGICTLDDRSGRLEVMLFTDALDKYQQL---LEKDRILIVSGQVSFDD 1058 ++K G + GI L+D E M++ AL+ + + L++ VS D Sbjct: 1002 FTQKLSKNSGKQFGILLLEDLDASCECMIYERALNALTEANVDMSPGTPLLLEATVSKRD 1061 Query: 1059 FSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQS 1104 ++ +V + EA L I L Q+ + L L ++ Sbjct: 1062 EQEKPRVIVDKVTPLAEAPATLTEKLHIHLYADQVKSETLRELAKA 1107 >UniRef50_A6CCN9 DNA polymerase III alpha subunit n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CCN9_9PLAN Length = 1154 Score = 721 bits (1860), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/1165 (36%), Positives = 668/1165 (57%), Gaps = 50/1165 (4%) Query: 17 MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGAD------- 69 M+DG ++ +V K GM +LAITD NL G + FY + PI+G + Sbjct: 1 MLDGASRIPEMVSKVKEAGMNSLAITDHGNLYGAMDFYQHCRSQDVNPILGLEAYIAPRS 60 Query: 70 -FNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEGL 128 F + + HLT+LA N G++NL L S +Y G+ P ID++ L +EGL Sbjct: 61 RFEKGASRMKEASFHLTLLAQNRQGFENLIKLSSASYLEGF-YYKPRIDKEILEAHSEGL 119 Query: 129 ILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVEL 188 ILL+G G++ +L + ++ A+YE+ F DR ++E+ G + L V+L Sbjct: 120 ILLTGCAAGELSHHILGEDWEEAEKLCAWYEKVFGDRVYMEIQNAGLEIQRQCLEGTVDL 179 Query: 189 AEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCE 248 A GLP+VATND ++D D +A ++ + + + D KR + Q ++R+++EM Sbjct: 180 ANRMGLPLVATNDAHYVDQKDAEAQDVLLCVSTRAVVSDEKRMKMTGDQFFVRTQDEMYN 239 Query: 249 LFADIPEALANTVEIAKRCNVTVRLGEYFLPQF-PTGDMSTEDYLVKRAKEGLEERLAFL 307 F + +A+A T E+A+R ++ + + F P F P +++ YL K EERL Sbjct: 240 AFPGLEDAVARTQELAERVDIQMS-DKKFYPVFQPPDNLTDTQYLRKLC----EERLPIK 294 Query: 308 FPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAG 367 + DE + + +RL+ EL VI QMG+ YFLIV +F+Q++++ G+P RGS G Sbjct: 295 YGDELTQ-----AHWDRLDLELGVIEQMGYSSYFLIVWDFVQFAENEGIPC-TARGSACG 348 Query: 368 SLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAV 427 ++VA+ L ++ + PL++DLLFERFL+P R PD D+DFC ++R VI++ YG +V Sbjct: 349 AIVAFLLGMSQVCPLKYDLLFERFLDPSRTEPPDIDIDFCRDRRQLVIDYTKQKYGEKSV 408 Query: 428 SQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEA 487 +QI TFGT+ AKA IRDVGR LG P V+ I+K+IP G+ L A + P L Y+ Sbjct: 409 AQIGTFGTLKAKAAIRDVGRALGVPLARVNEIAKMIPESLGIKLKDALKESPDLQSAYDQ 468 Query: 488 DEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVE 547 D E+K L+D+A +LEG+ R+AG HA GVV+A +++ PL +TQ+D VE Sbjct: 469 DSEIKRLLDLAMQLEGLCRSAGTHAAGVVVADLPLSEVVPLQSITGKTDIITQWDGPTVE 528 Query: 548 YAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTA 607 GL+K DFLGLR LTI++ A++ + K R + P +PLDD+++F++LQR ET Sbjct: 529 SVGLLKMDFLGLRNLTILDKAVQNVKKHRGIDINP----HKLPLDDQETFELLQRGETKG 584 Query: 608 VFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQ 667 +FQLES GM+DL+ +++PD FED+IA AL+RPGPL+ GMV ++D K+ R I P V Sbjct: 585 IFQLESGGMRDLLTKMKPDKFEDIIATSALYRPGPLEGGMVMQYVDVKNNR--IPIPKV- 641 Query: 668 WQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVF 727 H + +L+ TYG+++YQEQVM+I + G L A +A+ KKK + +A R + Sbjct: 642 --HPIVDEILDETYGVMVYQEQVMRILNRVGGIELSAAYRCIKAISKKKLKIIADFRDQY 699 Query: 728 AEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVM 787 EGA+K+G++ +LA +F+++EKFAGYGFNKSHS AY V+Y T +LKAHYP EFMAA++ Sbjct: 700 LEGAKKSGVDVKLATDLFEMIEKFAGYGFNKSHSTAYGGVAYATAYLKAHYPKEFMAALL 759 Query: 788 TADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGE-IVYGIGAIKGVGEGPI 846 + M++ E++ VD+C RM +++LPPDIN F V DGE I +G+GAIKGVGE + Sbjct: 760 SCGMESHERITEHVDDCRRMKIEVLPPDINRSEVEFSV--DGEKIRFGMGAIKGVGEQVL 817 Query: 847 EAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDAL 906 EA+++ R + G F L++LC R D K LN+ LE LI +GA + LG ++A LM ++ A+ Sbjct: 818 EAVVKEREENGPFTSLYNLCERVDPKTLNKSTLETLIKAGALNSLGGNQAQLMLTVERAV 877 Query: 907 KAADQHAKAEAIGQADMFG---VLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTG 963 ++A + A GQ +FG V E + E S + WP L E+E G YLT Sbjct: 878 QSALNIHRDRARGQKSLFGDETVDEETGAEEEASLPEAEDWPRAQKLGAEKEVFGFYLTS 937 Query: 964 HPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICT----- 1018 HP+ + + +Y + +R +VI AG+V + ++ TK+ ++ G Sbjct: 938 HPLAEMGTSLTKYAQNQTNELAEMDDRVEVIL-AGMVSSIKMAATKKPSKNGNTRYVNFD 996 Query: 1019 LDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEARE 1078 L+D G + +++ + + ++ + ++I+ G++ D + +++ +++AR+ Sbjct: 997 LEDPHGLVRCIMWPEQFASMGEKVKMEAMVIIKGKI--DKRGREPNVIVDQLLTLNDARK 1054 Query: 1079 KYARGLAISLTDRQIDDQLLNRLRQSLE--PHRSGTIPVHLYYQRADARARLRF----GA 1132 ++ LAI+ Q + + L P ++ I V + +LR+ Sbjct: 1055 QFTDRLAINFKRGVHTRQDMVNVHDVLTQFPGQTEVILVVDSVDQEKPGTQLRYVLNPPG 1114 Query: 1133 TWRVSPSDRLLNDLRGLIGSEQVEL 1157 + RVS S+ L +IG + Sbjct: 1115 SLRVSCSNEFETQLTAVIGQSHIHF 1139 >UniRef50_Q2G7G3 DNA polymerase III, alpha subunit n=2 Tax=Alphaproteobacteria RepID=Q2G7G3_NOVAD Length = 1215 Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/1090 (40%), Positives = 612/1090 (56%), Gaps = 68/1090 (6%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M FV LR+ S Y+M+DG + K AA G PA AITD L G V + A Sbjct: 20 MPHAAFVPLRIFSSYTMLDGAIDPKAIAKTAAERGFPAAAITDRNGLYGSVAYAKACKDM 79 Query: 61 GIKPIVGADFNVQ----------CDLLGDELTHLTVLAANNTGYQNLTLLISKAY-QRGY 109 G++P++G V + L + A + GY NL L+S+A+ R Sbjct: 80 GVQPVIGTMLAVARPERDGAATGFGPAAPTIDWLALYAQDARGYDNLCHLVSRAHLDRPL 139 Query: 110 GAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLE 169 A ++ D L+ +GLI L+ G + + L G + + V E FP+R ++E Sbjct: 140 EFAPHVVLAD-LVGHTDGLICLTAASEGALAQLLAGGQQSAAEAYVDRLLELFPERLYIE 198 Query: 170 LIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPK 229 + R EE+ A ++LA AR LP+VATN F + + +DAH+ + I +D Sbjct: 199 IARRNDAVEEASETALIDLAYARDLPLVATNPACFAERTFYDAHDAMLCIASSTHVDSAD 258 Query: 230 RPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGD---- 285 RPR+ S + +++ M ELF D+PEALANT+ +A+RC V + LP GD Sbjct: 259 RPRS-SKEWWIKPAAVMEELFKDLPEALANTLVVAQRCAVMPPKRKPILPSL-AGDQEGE 316 Query: 286 --MSTEDY---LVKRAKEGLEE-------RLAFLFPDEEERLKRRPE------------Y 321 M ED LV R + E R+ L PD E P+ Y Sbjct: 317 ARMCAEDSRKGLVLRLEPYYPESTHAELARVLCLGPDAEPVAADHPQLVEAGVWEEVLDY 376 Query: 322 DERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDP 381 +RLE E+ +IN+MGF GYFLIV +FI+W+K++G+PVGPGRGSGAGSLVA+AL ITDLDP Sbjct: 377 RKRLEFEIAIINRMGFGGYFLIVADFIKWAKEHGIPVGPGRGSGAGSLVAWALTITDLDP 436 Query: 382 LEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAV 441 ++ LLFERFLNPERVSMPDFD+DFC +R +VI +V YG D V+QIITFG + A+AV Sbjct: 437 IKLGLLFERFLNPERVSMPDFDIDFCETRRGEVIRYVQRKYGEDHVAQIITFGKLKARAV 496 Query: 442 IRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAEPQLPEIYEADEEVKALIDMAR 499 +RD GR+L YG DR+ K++P P L +A +L Y+ D EVK LID+A Sbjct: 497 LRDTGRILQMSYGQTDRLCKMVPNHPTDPWPLPRALNGVAELKREYDRDPEVKRLIDLAM 556 Query: 500 KLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGL 559 +LEG+ RN+ HA GVVI + PLY D PVTQFD VE AGLVKFDFLGL Sbjct: 557 QLEGLPRNSSTHAAGVVIGDRPLAQLVPLYRDPRSDMPVTQFDMKHVEDAGLVKFDFLGL 616 Query: 560 RTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDL 619 +TL+++ A++++ KR + +D++A+P DD++++ +LQ +T VFQLES GM+ Sbjct: 617 KTLSVLRKAVDLMKKRSIE-----IDLSALPWDDEQTYKLLQSGDTVGVFQLESEGMRRT 671 Query: 620 IKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEP 679 + ++P F D+IALV+L+RPGP+ + + F RK+G E I YP H+ L +L Sbjct: 672 LAAVKPTNFGDIIALVSLYRPGPMDN--IPLFGRRKNGLEAIEYP-----HDKLAGILSE 724 Query: 680 TYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGA-EKNGINA 738 TYGI +YQEQVMQ AQ+L+GY+LG AD+LRRAMGKK EM QR F +G E +GI A Sbjct: 725 TYGIFVYQEQVMQAAQILAGYSLGDADLLRRAMGKKVQAEMDAQRQRFVDGCKEVSGIPA 784 Query: 739 ELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVV 798 A ++FDL++KFAGYGFNKSH+AAYAL++YQT WLK HYP EF AA M DM +EK+ Sbjct: 785 AKANELFDLIDKFAGYGFNKSHAAAYALLAYQTAWLKTHYPHEFYAAAMCFDMHQSEKLS 844 Query: 799 GLVDECWRMGLKILPPDINSGLYHFHV---NDDGEIVYGIGAIKGVGEGPIEAIIEARNK 855 VD+ R G+ + PDIN F V +D + Y + ++ VGE +E I+E R Sbjct: 845 VFVDDMRRNGVALAGPDINHSEAEFTVERTHDGYAVRYALAGLRNVGEKAMEQIVEEREA 904 Query: 856 GGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKA 915 G F L DL R +NRR LE L GA D L P+RA ++ + + A++ +++ Sbjct: 905 NGPFASLDDLFRRIPAGSMNRRQLEALAAGGALDCLEPNRAQIIANAELLMAVAEEASRS 964 Query: 916 EAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIE- 974 GQ +FG ++ + +PW + ERE G Y HP+ +Y Sbjct: 965 RTSGQGGLFG--GDDHATPATRLSDTKPWSRADQMAAERENFGFYFAAHPVEEYRAVASA 1022 Query: 975 ---RYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 R G + P R + AA LV + TK+G + D SG F Sbjct: 1023 NGARSYGSLMTSSGEPGGRSGAVMAA-LVENVQKRKTKKGKDFVMADFSDSSGLFSASCF 1081 Query: 1032 TDAL-DKYQQ 1040 ++L + +QQ Sbjct: 1082 EESLVEPFQQ 1091 >UniRef50_B0VJC8 DNA polymerase III, alpha subunit n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VJC8_9BACT Length = 1146 Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/1115 (36%), Positives = 637/1115 (57%), Gaps = 51/1115 (4%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL H+ YSM+DG + ++K A MPA+AITD NL G + FY AGIKPI Sbjct: 3 FVHLHNHTQYSMLDGACRVDRMIKLAKEYAMPAVAITDHGNLFGAIDFYKTAKNAGIKPI 62 Query: 66 VGAD-FNVQCDLLGDE-----LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRD 119 +G + + + DL + HL +LA N GY+NL L S +Y +G+ P I + Sbjct: 63 LGIEAYIINGDLESETGKNEIRYHLILLAQNEQGYKNLMKLSSYSYIKGF-YYKPRISKT 121 Query: 120 WLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEE 179 L + +EGLI LS G++ + +E +Y++ F + +++E+ E+ Sbjct: 122 LLKQYSEGLICLSACVKGEIPALIYNDRMQQAEEVALWYKDLFQEHFYIEIQDHNLEPEK 181 Query: 180 SYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQY 239 + ++LA+ +P+V TND +++ +D++AH+I + I G L DP R + Q Y Sbjct: 182 KIMPRLIDLAKKLEIPMVLTNDCHYLNKNDYEAHDILLCIQTGKLLHDPDRLHYGTNQLY 241 Query: 240 MRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF--PTGDMSTEDYLVKRAK 297 +S EEM ELF D+PEA NT++IA ++ + ++ LP P + +YL Sbjct: 242 FKSPEEMKELFPDVPEAYNNTLKIADMVDLELHYDKFLLPNIETPPEFKTMGEYLRFLCY 301 Query: 298 EGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVP 357 E + + +PD E +K+R EY EL+VI++MGF GYFLIV + I ++ VP Sbjct: 302 ENAKIK----YPDLNETIKQRIEY------ELEVIDRMGFNGYFLIVKDIIDNARKQSVP 351 Query: 358 VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEH 417 VGPGRGSGAGS+VAY L IT +DPL++ L+FERFLNP+R+SMPD D+DFC + R +VI++ Sbjct: 352 VGPGRGSGAGSIVAYLLDITQIDPLQYGLVFERFLNPDRISMPDIDIDFCAQNRSKVIDY 411 Query: 418 VADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEA 477 + YGR++V+QIITF T+ AK+VI+DV RVL P + I+K I + TL +A+ Sbjct: 412 IIQRYGRESVTQIITFSTLGAKSVIKDVARVLSVPASEANAITKTIQGNK--TLDEAYNQ 469 Query: 478 EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDE---EG 534 P+ + +++ + + ++ LEG+ R H GVVIAP +TD+ PL C E Sbjct: 470 YPEFSSLINSNDLYRTIFKHSKVLEGLVRQTSVHPAGVVIAPGDLTDYVPLACSTQKGEE 529 Query: 535 KHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDK 594 K + QF+ + L+K D LGL+ LT+I ++++ + + + +DI I L+DK Sbjct: 530 KVILVQFEGKWLNDLKLLKMDILGLKNLTLIQKTIDLVKQAQ----DIDIDINHISLEDK 585 Query: 595 KSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDR 654 K +++L + ET VFQ ES GM+ + L+P+ ED+IA+VAL+RPGP+Q +D++I R Sbjct: 586 KVYNILGKGETDGVFQFESDGMRKYLIELKPNKIEDLIAMVALYRPGPMQ--FIDSYIAR 643 Query: 655 KHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK 714 KHGRE++ Y H ++ L+ TYG+ +YQEQVMQIA+ + G+T G AD LR+AMGK Sbjct: 644 KHGREKVVY-----DHPLMENALKETYGVTIYQEQVMQIAREMGGFTGGEADSLRKAMGK 698 Query: 715 KKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWL 774 K + M + + F +GA+ + + KI+ +FA Y FNKSH+ YALV+YQT +L Sbjct: 699 KNSDLMQQYQEKFRQGAKAQNVPDAVIEKIWQDWLRFAEYAFNKSHATCYALVAYQTAYL 758 Query: 775 KAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYG 834 KA+YP EFMAA+++ + D T K+ G ++ C +MG+KI+PP+IN F V+ E+++G Sbjct: 759 KAYYPVEFMAALLSLEDDPT-KIPGKIEVCKKMGIKIIPPNINRSDSEFRVHGK-EVLFG 816 Query: 835 IGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPH 894 + AIK +G+ + IIE RN+ G + +F+ C R D+ +N+ +LE LI SGA D L Sbjct: 817 LRAIKNLGDAAMRDIIEDRNQNGPYTSIFEFCNRLDSTSVNKTILESLIASGAMDELEGT 876 Query: 895 RAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSY----ASCQPWPEQVVL 950 RA N + AL+ + K GQ+ +F + E E + +Y S +PW L Sbjct: 877 RAQKWNVIELALQFSSNDQKDRKRGQSTIFDFMDTEDE--DNNYYPPLPSVEPWSYIYQL 934 Query: 951 DGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKR 1010 + E+E LG YL+GHP+ +Y I+ T+ + AG++ + Sbjct: 935 EKEKEVLGFYLSGHPLFEYRSLIKHLTNAN--SSTGKTKNNGELLIAGIINNISKKKDNK 992 Query: 1011 GNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGG----LKMT 1066 GN I +D G+ EV LF +Y + + ++ + G S F+G L++ Sbjct: 993 GNPIAFVEFEDLCGKFEVPLFNKDFMQYHKKISPGKVFFIIGNKS--TFNGNEDSILRIL 1050 Query: 1067 AREVMDIDEAREKYARGLAISLTDRQIDDQLLNRL 1101 ++D E + + + I++ + + + LL L Sbjct: 1051 PNALIDFKELPSELSGEIKINIPNEHLKNGLLTEL 1085 >UniRef50_Q1RKF9 DNA polymerase III subunit alpha n=21 Tax=Rickettsia RepID=DPO3A_RICBR Length = 1172 Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/1120 (37%), Positives = 624/1120 (55%), Gaps = 72/1120 (6%) Query: 3 EPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGI 62 + F+HLR S YS + T +V+ A++ M A+ +TD NL G ++F G+ Sbjct: 2 QTEFIHLRTQSSYSFLASALTTEKIVELASSYKMAAICLTDKENLFGSLEFALYAIKKGL 61 Query: 63 KPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLI 122 +PI G N+Q + + ++A + TGY+NL L S + I + L Sbjct: 62 QPIHGVILNIQYE--TGVFAEILLIAKDETGYKNLLKLSSITFTTNDRKICNHITFEDLK 119 Query: 123 ELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYL 182 E EGLI L G +G+ LL + +E F DR++ E++R P+E+ Sbjct: 120 EHQEGLITLCCYTEGVIGKCLLANKEEQAEMFARNLQEIFGDRFYFEIMRHDLPEEQLIE 179 Query: 183 HAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRS 242 +++A +P+VATN V F S DAH++ + I G T + P R + S Y +S Sbjct: 180 DNYIKIASKLNIPLVATNKVLFSKKSMHDAHDVLLCISAGVTKEYPDR-KTVSENCYFKS 238 Query: 243 EEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKEGLEE 302 +EM ELFAD+P A+ NTV + +RC LP F T D+S D + K AK+GL Sbjct: 239 AKEMIELFADLPSAIENTVNLTQRCYFAAHTNPPMLPNFATKDISETDLIRKEAKDGLLA 298 Query: 303 RLAFLFPDE----EERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPV 358 RL F E E + + EY RL+ EL +I M F GYFLIV +FI+WSK G+ V Sbjct: 299 RLDTKFKSEHISIEHQESIKTEYFARLDYELNIICSMNFAGYFLIVSDFIKWSKKQGILV 358 Query: 359 GPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHV 418 GPGRGSGAGS+VA++L ITDLDP++F LLFERFLNP+R+SMPDFD+DFC E+R++VI +V Sbjct: 359 GPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPDRISMPDFDIDFCQERREEVINYV 418 Query: 419 ADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIP---PDPGMTLAKAF 475 YG + V QIITFG M AKAVI+DV RVL PY F D +++L+P +P +TL +A Sbjct: 419 RSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVPFSAINP-VTLEQAI 477 Query: 476 EAEPQLPEIYEAD---------EEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 P+L + + E +K ++D + LEG+ R++ HA G+VIA T + D Sbjct: 478 REVPELANAAKGNGLYNLEGELELIKLVLDTSLILEGLHRHSSTHAAGIVIAGTDLVDIV 537 Query: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586 P+Y D V + E AGL+KFDFLGL+TLT+I K+ K +D Sbjct: 538 PVYKDANSDMLVVGYSMKYCELAGLIKFDFLGLQTLTVITDC-----KKLLKEQNIEIDF 592 Query: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 + DD+K++ ML + + VFQ ES GMKD ++RL+PD D+IAL AL+RPGP+++ Sbjct: 593 NDMTFDDEKTYQMLCKGKGVGVFQFESVGMKDALRRLKPDSIHDLIALGALYRPGPMEN- 651 Query: 647 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 + +I KH ++ PD + HE LKP+LE TYG+++YQEQV +IAQVL+GYTLG AD Sbjct: 652 -IPTYIACKHKLQQ---PD--YLHELLKPILEETYGVVIYQEQVQRIAQVLAGYTLGAAD 705 Query: 707 MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 +LRRAMGKK EM +Q +F +GA N I+ A IF V KFAGYGFNK+H+AAY + Sbjct: 706 LLRRAMGKKIKAEMEQQEEIFVKGAIANNISEAQAKSIFATVAKFAGYGFNKAHAAAYGV 765 Query: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 +SYQT +LKA+YPAEF+ A + +++N +K+ + E +KI+ P+IN +F V Sbjct: 766 ISYQTAYLKANYPAEFVVACLNLELNNHDKINLFLQEAKDNNIKIIAPNINISGGYFSVK 825 Query: 827 D-------------------------DGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRE 861 D I++ +GAIKGV + + + RN G F+ Sbjct: 826 SVIPRLDCGIHGDQLKDTAVKPQYDIDSSIIFALGAIKGVTPNFGKLVTDERNARGAFKS 885 Query: 862 LFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQA 921 + D R K +N ++LE LI +G FD L +R L S+ L + + + +A Q Sbjct: 886 IVDFIERLPPKAINSKLLENLIKAGCFDELHDNRLQLFLSISKLLAYSVSYHEEQASNQF 945 Query: 922 DMFGVLAEEPEQIEQS-YASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGV 980 + V + E + S YA + + E E +GL+++ HP+ +Y KEI + + Sbjct: 946 SLIKVSSLSKEILVSSDYAD-----KNTLAFYEFEAMGLFISNHPLTEY-KEIFNRLNIL 999 Query: 981 RLKDMH---PTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFT-DALD 1036 D+H P +V+ AG++ ++ RG R L D E+ +F+ + L Sbjct: 1000 SSADLHNNLPDGTNRVMI-AGVIQKKDSRMSARG-RFVTLVLSDPENIFELSIFSEEVLK 1057 Query: 1037 KYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEA 1076 Y LL+ +++V+ + D+ GG+K+TA+ I+ A Sbjct: 1058 DYVHLLDVKSLVVVNCDIIKDE--GGIKITAKSFSSIENA 1095 >UniRef50_C6VZ84 DNA polymerase III, alpha subunit n=3 Tax=Sphingobacteriales RepID=C6VZ84_DYAFD Length = 1216 Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust. Identities = 434/1227 (35%), Positives = 670/1227 (54%), Gaps = 98/1227 (7%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 +F HL H+ +S++DG A L KKA MPA+AITD N+ G+ +F G+ GIKP Sbjct: 2 QFSHLHCHTQFSLLDGAADIKKLFKKAKEDNMPAVAITDHGNMFGVFEFVAEGNKQGIKP 61 Query: 65 IVGADFNVQCDLLGDELT--------HLTVLAANNTGYQNLTLLISKAYQRGYGAAGPII 116 IVG +F V D + T H +LA + GY+NL + S + G P I Sbjct: 62 IVGCEFYVVEDRHVRQFTKDKKDVRHHQLLLAKDEIGYKNLVKMCSLGFIEGMYGKYPRI 121 Query: 117 DRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRP 176 D+D +++ ++GLI + + ++++R + ++ + F D +++EL R Sbjct: 122 DKDLIVQYHKGLIATTCCIGAIIPKTIIRQGEEAAEREFKWWLDLFGDDFYVELQRHDIR 181 Query: 177 DEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDG--------FTLDDP 228 D+ ++ A + ++ +ND ++D D++AH+I + I+ G DD Sbjct: 182 DQYIVNEVLIKFARKYNVKIICSNDSHYVDRDDWNAHDILLCINTGDKQSTPSAKDFDDE 241 Query: 229 K------RPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFP 282 K R Y+ Q Y + EM +LF D+PE+L NT EI + + LP FP Sbjct: 242 KGIPKGSRFAFYNDQFYFKKTSEMLQLFNDLPESLDNTNEIVDKIKTLDLRKDILLPNFP 301 Query: 283 TGDMSTEDYLVKRAKEGLEERLAFLFPDEE-------ERLKRR-----PEYDERLETELQ 330 D L + G +E A + E E +++ PE +ERL ELQ Sbjct: 302 IPDEFKTHTLSEMV--GKKELTADVLNQWEYLRHLTFEGARKKYDVVTPEIEERLNFELQ 359 Query: 331 VINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFER 390 I MGFPGYFLIV +FI + GV +GPGRGS AGS VAYA+ IT++DP+++DLLFER Sbjct: 360 TIRNMGFPGYFLIVADFIDAGRKMGVFIGPGRGSAAGSAVAYAIGITNIDPVKYDLLFER 419 Query: 391 FLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLG 450 FLNP+R+SMPD D DF + R +VI++V YG + V+QI+T+GTMAAK+ I+DV RV+ Sbjct: 420 FLNPDRISMPDIDTDFDDDGRQKVIDYVVKKYGYNQVAQIVTYGTMAAKSAIKDVARVMD 479 Query: 451 HPYGFVDRISKLIPPDP--GMTLAKAFEA-----------EPQLPEIYEADEEVKAL--- 494 P + ++KL+P P MTL + F A E P+ E + ++A+ Sbjct: 480 LPLPDANMLAKLVPDKPTYNMTLNRIFTAPLEGEGSLMKKEGISPDELENVKRMRAIAVG 539 Query: 495 -------IDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVE 547 + AR+LEG RN G HA G++IAP+ +T+ P+ ++ +TQ+ +E Sbjct: 540 NDLQASVLQEARRLEGTVRNTGIHAAGIIIAPSDLTEIIPVSTSKDSDFLITQYQGKIIE 599 Query: 548 YAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTA 607 AG++K DFLGLR L+II AL MI + + I +PLDD K F++ QR ET A Sbjct: 600 DAGVIKMDFLGLRNLSIIKEALRMIKNNYGHD----IVIDDVPLDDPKVFELFQRGETNA 655 Query: 608 VFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQ 667 +FQ ES GMK ++ L PD FE +IA+ AL+RPGP+ + NFI RK+G+EE++Y Sbjct: 656 IFQFESDGMKKYMRDLIPDRFEHLIAMNALYRPGPI--AYIPNFIRRKNGQEEVTY---- 709 Query: 668 WQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVF 727 L+ L TYGI +YQEQVM ++Q L+G+T G AD LR+AMGKK+ E + K + F Sbjct: 710 -DLPELEEYLADTYGITVYQEQVMLLSQKLAGFTKGQADTLRKAMGKKQIETLNKLKGDF 768 Query: 728 AEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVM 787 +G + G++A+ KI+ E FA Y FNKSHS YA V+YQT +LKAHYPAE+MAAV+ Sbjct: 769 MKGGTEKGLDAKKLEKIWTDWEAFASYAFNKSHSTCYAFVAYQTAYLKAHYPAEYMAAVL 828 Query: 788 TADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIE 847 T+ + + +K+ ++EC + L +L PDIN F VN GEI +G+ +KG G+ +E Sbjct: 829 TSSLGSIDKITFFMEECKNLSLPVLGPDINESERQFSVNKKGEIRFGLAGVKGSGDAAVE 888 Query: 848 AIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGP-HRAALMNS----- 901 +IIE R KGG F+++FD R + + +N++ LE L +GAFD HRA + Sbjct: 889 SIIEERAKGGPFKDVFDFMTRVNLRTVNKKTLESLAYAGAFDCFTDYHRAQYFTAEQGEN 948 Query: 902 ---LGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYAS-CQPWPEQVVLDGERETL 957 + ++ A+ + ++ QA +FG+L + + + A+ PW + L E+E + Sbjct: 949 GTFIEKLIRYANNYHAEKSSAQASLFGMLGDSGSTLAKPKAADIGPWDDLAKLRYEQEVV 1008 Query: 958 GLYLTGHPINQYLKEIERYVGGVRLKDMH-------PTERGKVITAAGLVVAARVMVTKR 1010 G Y++GHP++ + E++ + K M P GK I AG+V +A+ ++K Sbjct: 1009 GFYISGHPLDTFRAELDNFCNCTLDKVMEINEGERAPKYYGKDINVAGIVTSAQERMSKN 1068 Query: 1011 GNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSF-----DDFSGGLKM 1065 G+ I ++D G +E+++ + +++ L+ + L + G+V D F + Sbjct: 1069 GSLFMIFKIEDYQGAMEMLIGGEDYIRFKNYLQVGQFLYIKGKVQNRWKQEDQF----EF 1124 Query: 1066 TAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADAR 1125 ++ + E EK R + I+LT QID Q ++ L ++ + G V + + + Sbjct: 1125 KISQIQLLPEIMEKMCRKIKINLTLDQIDAQFIHVLNETFGSYPGGC-QVSMTVKDPETH 1183 Query: 1126 ARLR-FGATWRVSPSDRLLNDLRGLIG 1151 + +RV+PS+ L LRG G Sbjct: 1184 LEVEMLSRGYRVAPSNELFKVLRGFHG 1210 >UniRef50_D0WG97 DNA polymerase III, alpha subunit n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WG97_9ACTN Length = 1194 Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust. Identities = 438/1173 (37%), Positives = 659/1173 (56%), Gaps = 59/1173 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAG------HG 59 FVHL H++YSM+DG +V++AA L MPA+AITD +CG+ + A G Sbjct: 25 FVHLHNHTEYSMLDGATHVKDMVRRAADLDMPAVAITDHGVMCGVPELCDACAAVERETG 84 Query: 60 AGIKPIVGADFNVQCD-LLGDE----LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGP 114 +KPI G + D +G + L H+ +LA N+ GY NL L+S+++ Y P Sbjct: 85 KKVKPIYGCEIYFTEDPEVGTKKRSPLYHMIMLAKNSEGYHNLLHLVSESHMDNY-YYKP 143 Query: 115 IIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRT 173 D + + +G++ S G + R L + A E +++ F P +++EL Sbjct: 144 RTTLDMIKKHAKGIVATSACIAGIIPRRLRERDVAGAREWAQTFKDIFEPGDFYIELQDQ 203 Query: 174 GRPDEESYLHAAVE-----LAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228 G EE + + LA GL +ATND ++ D A +I + I G DD Sbjct: 204 GISTEEGFSQHELNVQLSNLAHDLGLETIATNDFHYLTREDAKAQDIMLCIGTGSNYDDE 263 Query: 229 KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMST 288 R R + + YM++EEEM E D PEA NTV++A++C+V + + LP+FP + T Sbjct: 264 NRMRFANDEFYMKTEEEMREALRDFPEACDNTVKVAEKCSVELER-DSILPRFPLPEGYT 322 Query: 289 EDYLVKR-AKEGLEERLAFL--FPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVM 345 E+ L + ++GL R +E RP+ ER E E VI Q GFP YFLIV Sbjct: 323 EEMLFREECEKGLIHRYGNNGEITTMDELRAARPDVVERYEYEAGVIIQQGFPAYFLIVQ 382 Query: 346 EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405 E+I+W+KDNG+ VGPGRGS AG++ YA+ ITDL+PL+ LLFERFL+PERV MPD DVD Sbjct: 383 EYIRWAKDNGIGVGPGRGSAAGAICTYAMGITDLEPLDNGLLFERFLSPERVEMPDIDVD 442 Query: 406 FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465 F + R VI+HV D YG D ++ +ITFG + AK +RD RVLGHPYG D+I K I Sbjct: 443 FDDQHRQDVIDHVRDFYGADHIAGVITFGKLQAKNAVRDAARVLGHPYGVGDKICKTIGD 502 Query: 466 DPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDF 525 + G+TL A E L ++Y+ D + + +ID AR +EG R G HA +I + D Sbjct: 503 ELGITLDDALENNVDLKKMYDDDADTRDIIDAARSIEGNIRGEGVHACATIICRDPLVDH 562 Query: 526 APLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLD 585 P+ D +G +TQ+D GL+K DFLGLRTL +++ A + + R P Sbjct: 563 VPVKRDTKGGGMITQYDGHYTPELGLLKMDFLGLRTLGVLSRACKNVKARHGLEIRPD-- 620 Query: 586 IAAIPLDDKKSFDMLQ---RSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 IP++D ++F +++ R +FQ+E L RL P F D++A +AL RPGP Sbjct: 621 --EIPIEDAEAFRLMRGEMRWGMDGLFQVEGALYVSLFSRLPPRRFSDIVASIALNRPGP 678 Query: 643 LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 L+SGMVD+++ +G EI Y D + L+P+LE TYG ++YQEQ+MQI+ +SG++ Sbjct: 679 LESGMVDDYVKVANGTTEIHYYD-----DRLRPILEETYGTMVYQEQIMQISMAMSGFSA 733 Query: 703 GGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSA 762 G AD LR+AMGKKK + M + ++ + EGA +NG + E+A +I++ EKFA Y FNKSHSA Sbjct: 734 GKADRLRKAMGKKKLDIMRQLQADWNEGAVENGYSLEIAKQIWEDAEKFAKYAFNKSHSA 793 Query: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 AYAL+ +T +LKAHYP EFMAAV+++ M N ++++ + C G+ +LPPD+N+ Sbjct: 794 AYALLVMRTAYLKAHYPYEFMAAVLSSYMGNADRLIKYISSCTHSGIPVLPPDVNTSNLE 853 Query: 823 FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKL 882 F ++G I +G+ ++G+GE ++II+ R G + L D R D K NR+ LE L Sbjct: 854 FTPLEEG-IRFGLAGVRGIGEAVAQSIIDEREANGPYSSLHDFVNRLDAKCYNRKTLEAL 912 Query: 883 IMSGAFDRLGPHRAALMNSLGDA--LKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYAS 940 + SGAFD G R LM+ + D L++A + K GQ MF + A+ P + + Sbjct: 913 VKSGAFDSTGYTRKQLMHFIDDTPLLESAAKRQKDRDAGQVSMFDLFADVP---DSGFDD 969 Query: 941 CQP------WPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVI 994 P W ++++L E+E L +Y++ HP+ Y + +E V L D+ +G + Sbjct: 970 DVPAPDGIEWDKRMLLAYEKEILKIYVSDHPLRPYERSLES-VTKYHLGDL-AEHKGDIK 1027 Query: 995 TA--AGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSG 1052 A AGLV + V +T++G ++ L+D +G +E + F +++ +++D I+ + G Sbjct: 1028 NAVFAGLVASVTVKMTRKGTKMANFDLEDTTGHMECVCFK--YSDFEEAIQEDAIVKIKG 1085 Query: 1053 QVSFDDFSGGLKMTAREV--MDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRS 1110 + F+ G ++ A EV +D+D RE L ISL D + RL L + Sbjct: 1086 R--FEHSERGDQILAFEVERLDVDSMRET-PSNLQISLAAADFDQSVATRLYGILGDY-P 1141 Query: 1111 GTIPVHLYYQRADARARLRFGATWRVSPSDRLL 1143 G PV LY +++D R + R +V +D LL Sbjct: 1142 GNDPVVLYVEQSDGR-KFRAELPIKVDAADNLL 1173 >UniRef50_Q9Z7N8 DNA polymerase III subunit alpha n=16 Tax=Chlamydiales RepID=DPO3A_CHLPN Length = 1240 Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/1135 (37%), Positives = 646/1135 (56%), Gaps = 84/1135 (7%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 ++ L HS YS++D ++ V K G+PALA+TD NL G V FY GI+PI Sbjct: 3 WIPLHCHSQYSVLDAMSSIKDFVAKGQEFGIPALALTDHGNLYGAVDFYKECTQKGIQPI 62 Query: 66 VGAD--------FNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIID 117 +G + F+ + + HL +L N GY+NL +L S A+ G+ P ID Sbjct: 63 IGCECYIAPGSRFDKKKEKRSRAAHHLILLCKNEQGYRNLCILTSLAFTEGF-YYFPRID 121 Query: 118 RDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPD 177 +D L + +EGLI LSG V + L+ AL+ E + ++++ F D YF E ++ + Sbjct: 122 KDLLRQYSEGLICLSGCLSSSVSDAALKSPEALLLE-LQWFQDLFKDDYFTE-VQLHKMS 179 Query: 178 EESYL----------------------HAAVELAEARGLPVVATNDVRFIDSSDFDAHEI 215 EES A +E ++ G+P VATND+ +I+++D+ AHEI Sbjct: 180 EESIAGFKEEWLKQEYYSLIEKQIKVNTAVLEASKRLGIPTVATNDIHYINANDWQAHEI 239 Query: 216 RVAIHDGFT---------LDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKR 266 + + G T + +PKR S + Y +S +M ELF DIPE ++NT+E+AKR Sbjct: 240 LLNVQSGETVRIAKQNTHIPNPKRKVYRSREYYFKSPAQMAELFKDIPEVISNTLEVAKR 299 Query: 267 CNVTVRLGEYFLPQFPTGDMST------ED-------YLVKRAKEGLEERLAF-LFPDEE 312 C+ T + P + + T ED +L + A+E L ++ + + Sbjct: 300 CDFTFDFSKKHYPIYVPESLKTLNSYTEEDRYQASAVFLKQLAEEALPKKYSSEVLAHIA 359 Query: 313 ERLKRRPEYD---ERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSL 369 ++ R D ER++ E+ +I G Y LIV + I W+K NG+PVGPGRGSGAGS+ Sbjct: 360 KKFPHRDPIDIVKERMDMEMAIIIPKGMCDYLLIVWDIIHWAKANGIPVGPGRGSGAGSV 419 Query: 370 VAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQ 429 + + L IT+++P+ FDL FERF+NPER+S PD D+D CM R++VI + + +G+D V+Q Sbjct: 420 LLFLLGITEIEPIRFDLFFERFINPERLSYPDIDIDICMAGRERVINYAIERHGKDNVAQ 479 Query: 430 IITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEADE 489 IITFGTM AK ++DVGR L V+ I+K IP D TL+KA E +P L ++Y D Sbjct: 480 IITFGTMKAKMAVKDVGRTLDMALSKVNHIAKHIP-DLNTTLSKALETDPDLHQLYINDA 538 Query: 490 EVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYA 549 E +IDMA LEG RN G HA GV+I ++T+ P+ ++ TQ+ VE Sbjct: 539 ESAQVIDMALCLEGSIRNTGVHAAGVIICGDQLTNHIPICISKDSTMITTQYSMKPVESV 598 Query: 550 GLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVF 609 G++K D LGL+TLT IN A+ I K+ ++ L +A +PLDD +F +L + +T +F Sbjct: 599 GMLKVDLLGLKTLTSINIAMSAIEKKTGQS----LAMATLPLDDATTFSLLHQGKTMGIF 654 Query: 610 QLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQ 669 Q+ES+GM++L K L+PD FE++IA+ AL+RPGP+ M+ +FI+RKHG+E I Y Sbjct: 655 QMESKGMQELAKNLRPDLFEEIIAMGALYRPGPMD--MIPSFINRKHGKEIIEY-----D 707 Query: 670 HESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAE 729 H ++ +L+ TYGI++YQEQVMQIA L+ Y+LG D+LRRAMGKK ++M ++R F + Sbjct: 708 HPLMESILKETYGIMVYQEQVMQIAGALASYSLGEGDVLRRAMGKKDFQQMEQEREKFCK 767 Query: 730 GAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTA 789 A NGI+ ELA IFD +EKFA YGFNKSH+AAY L++Y T +LKA+YP E++AA++T Sbjct: 768 RACNNGIDPELATVIFDKMEKFAAYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTC 827 Query: 790 DMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAI 849 D D+ EK+ L+ E MG+ ILPP IN HF D+G I + +GAIKG+G G IE+I Sbjct: 828 DSDDIEKIGKLIREAQSMGIPILPPHINVSSNHFVATDEG-IRFAMGAIKGIGRGLIESI 886 Query: 850 IEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAA 909 +E R+ G + + D R+D KK++++ +E LI +G FD +R L+ S+ +A Sbjct: 887 VEERDHHGPYESIRDFIQRSDLKKVSKKSIESLIDAGCFDCFDSNRDLLLASVEPLYEAI 946 Query: 910 DQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQP-----WPEQVVLDGERETLGLYLTGH 964 + K A G F + A + + C P ++ +L E+E LG+YLT H Sbjct: 947 AKDKKEAASGVMTFFTLGAMDR---KNEVPICLPKDIPTRSKKELLKKEKELLGIYLTEH 1003 Query: 965 PINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN-RIGICTLDDRS 1023 P++ + R + V + G V+ ++ ++ + + + + D Sbjct: 1004 PMDTVRDHLSR-LSVVLAGEFENLPHGSVVRTVFIIDKVTTKISSKAQKKFAVLRVSDGI 1062 Query: 1024 GRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEARE 1078 E+ ++ D ++ Q+LLE+DR ++ + D S L+++ R + D+ E Sbjct: 1063 DSYELPIWPDMYEEQQELLEEDR--LIYAILVLDKRSDSLRISCRWMKDLSIVNE 1115 >UniRef50_B0MN02 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MN02_9FIRM Length = 1109 Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/1146 (37%), Positives = 634/1146 (55%), Gaps = 64/1146 (5%) Query: 34 LGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVQCDLLGDELT-------HLTV 86 +G A+A+TD + G + FY GIK I+G + V D+ T HL + Sbjct: 1 MGQTAVALTDHGVMYGSIDFYNECVENGIKAIIGCEVYVAPRTRFDKSTKSDMKPHHLVL 60 Query: 87 LAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRG 146 L +N GY+NL+ L++ Y G+ P +DR+ L ++GLI LS G++ R+LL G Sbjct: 61 LCKDNEGYKNLSKLVTLGYTEGF-YNKPRVDRELLRRYSKGLICLSACISGELARTLLDG 119 Query: 147 NSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFID 206 A V Y E F + Y++EL G ++E L + +A+ G +VATND +++ Sbjct: 120 RLADAVTLVKEYREIFGEDYYIELQSHGISEQERILPYLLRVAKDTGTQLVATNDAHYVE 179 Query: 207 SSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPE-ALANTVEIAK 265 D + I TLDD + + + Y++SE+EM L P+ A NTV+IA+ Sbjct: 180 KEDSYVQRVLTCIATNTTLDDKNSMQFATDEFYLKSEDEMKAL--GFPQSAYDNTVKIAE 237 Query: 266 RCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDER 324 +CNV+ G LP F G + E Y + ++GL +R P E +R Sbjct: 238 KCNVSFTFGHTILPFFKAEGYDNNEIYFNAQVRKGLVKRYGDPVP---------KEVLDR 288 Query: 325 LETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEF 384 E E+ VI +MGF YFLIV +FI ++K NG+ VGPGRGSGAGS+ AY L ITD+DP+ F Sbjct: 289 AEYEMSVIKKMGFIDYFLIVADFIGYAKRNGIAVGPGRGSGAGSVCAYCLGITDIDPIRF 348 Query: 385 DLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRD 444 +LLFERFLNPERV+MPDFDVDFC +R +VI++V YGRD V+QIITFGTMAA+ IRD Sbjct: 349 NLLFERFLNPERVTMPDFDVDFCYIRRQEVIDYVVRKYGRDHVAQIITFGTMAARGAIRD 408 Query: 445 VGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGV 504 GR +G PYG VD ++KLIP T+ A ++E +L ++ +D EV LI+ A+K+EG+ Sbjct: 409 AGRAMGLPYGKVDTVAKLIPMSMHSTIDGALKSEKELVKLASSDSEVSLLIETAKKIEGM 468 Query: 505 TRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTI 564 RN HA G+VI + D+ PLY + EG+ +TQ+ + +E GL+K DFLGLR LT+ Sbjct: 469 ARNTSIHAAGIVITRDPVADYVPLYQNSEGE-VMTQYTMTAIERLGLLKMDFLGLRYLTV 527 Query: 565 INWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQ 624 I +++ K P DI IP +D +++DM+ T VFQ ES GM L+ R++ Sbjct: 528 IQDCCKLVVK-----SCPDFDIEKIPENDAETYDMMSSGGTLGVFQFESAGMTSLLSRMK 582 Query: 625 PDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGII 684 P ED+ A ++L+RPGP+ S + ++ + E+I Y +H LK +L+ TYG I Sbjct: 583 PRSVEDLTAALSLYRPGPMDS--IPTYLANRRNPEKIRY-----KHPLLKGILDVTYGCI 635 Query: 685 LYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKI 744 +YQEQVM I +VL+GY+ G AD++RRAM KKKPE M K+R+ F EGA N ++ ++A +I Sbjct: 636 VYQEQVMMICRVLAGYSYGRADIVRRAMAKKKPEVMVKERATFVEGAVANNVDRQVAEEI 695 Query: 745 FDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDEC 804 FD + FA Y FNKSH+AAY+L++Y+T +L+ HY E+M A++T+ + K + + Sbjct: 696 FDDMMSFASYAFNKSHAAAYSLLAYRTAYLRCHYYKEYMVALLTSVIGWGGKTAEYIGDL 755 Query: 805 WRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFD 864 + GLK+LPP +N F +DG I +G+ AIK VG I IIE R K F+ LFD Sbjct: 756 AQHGLKLLPPHVNYSETGFSCENDG-IRFGLLAIKNVGANMIADIIEERTKHP-FKSLFD 813 Query: 865 LCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF 924 C R K +N+R LE LI GAFD LG +R +M SL L Q E GQ + Sbjct: 814 FCERMSDKNINKRALESLIKCGAFDGLGNNRREMMISLELMLDTLSQRHDLE--GQMSLM 871 Query: 925 GVLAEEPEQIEQSYASCQP---WPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVR 981 G E + ++ +P + +L E+E LG+Y++GHP + + + I R G Sbjct: 872 G----EDDAADEGAFQIKPADEYSHAQLLSYEKEMLGIYISGHPADPFYR-IARESGYEN 926 Query: 982 LKDMHPTERGKV-ITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQ 1040 + + + + K + L+ + R +TK G +G ++D SG +E ++F ++Y Sbjct: 927 IGSILESNKDKQNVRVTALLTSVRNHITKSGKTMGFIVIEDASGEIECLVFPKLYEQYSS 986 Query: 1041 LLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR-----------EKYARGLAISLT 1089 +L + G VS +D G K+ + D A+ + A L I + Sbjct: 987 MLRTGNVYAFEGTVSAED-EGDPKLLINAITQPDLAKLRKMHESRNTGQNKAAVLYIRFS 1045 Query: 1090 DRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGL 1149 R DD + ++ L+ ++ T+ + D R + V + + L G+ Sbjct: 1046 SR--DDADIPAVKALLKVNKGNTLTKICF---EDTRETITLPPALSVDLNSDFIQKLNGI 1100 Query: 1150 IGSEQV 1155 G + Sbjct: 1101 CGKNNI 1106 >UniRef50_D1NST8 DNA polymerase III, alpha subunit n=1 Tax=Bifidobacterium gallicum DSM 20093 RepID=D1NST8_9BIFI Length = 1185 Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust. Identities = 440/1200 (36%), Positives = 662/1200 (55%), Gaps = 72/1200 (6%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL H+ YS++DG +K LV++ LGM A+ ITD N+ G + + G+KPI Sbjct: 7 FVHLHNHTHYSLLDGASKIPNLVRRTKELGMNAVGITDHGNMHGAYELWSEAVANGVKPI 66 Query: 66 VGAD---------FNVQCDLLGDE------------LTHLTVLAANNTGYQNLTLLISKA 104 +G + F+ G E +THLT+ A N+ G NL S A Sbjct: 67 LGIEAYATPETSRFDKSRVHWGTEEQRRDDVSGGGLITHLTLWAENDEGLVNLLKASSVA 126 Query: 105 YQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-P 163 G P +D++ L +G+I SG G V L G ++ F Sbjct: 127 NLEGRVMRYPRMDKEVLQTYAKGIICGSGCPSGIVQTRLRLGQFDEALRAAGELQDIFGK 186 Query: 164 DRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGF 223 + +++EL+ E + + +A+ P++ATND ++ D A + + I+ G Sbjct: 187 ENFYIELMDHNLSIERKVTNDLLTIAKKLDAPLLATNDSHYVMPEDASAQDAMLCINSGS 246 Query: 224 TLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE--YFLPQF 281 TLD+P R + Y+R EEM ELF ++PEA NT+E+A+RCNV E F+P+F Sbjct: 247 TLDEPGRFKFEGEGYYLRPAEEMRELFKELPEACDNTLEVAERCNVIFDDHEDGAFMPEF 306 Query: 282 --PTGDMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPG 339 P G T +L ++ +EGLE+R P+E + ++ +Y E +I QM F G Sbjct: 307 DCPEGWDETSLFL-RKVEEGLEKRYDGNPPEE---VLKQADY------ECGIICQMQFCG 356 Query: 340 YFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSM 399 YFL+V ++I W+K++ V VGPGRGS AG++VAYA+ ITDLDPL+ L+FERFLNPERVS+ Sbjct: 357 YFLVVADYINWAKEHDVMVGPGRGSAAGAMVAYAMGITDLDPLQHGLIFERFLNPERVSL 416 Query: 400 PDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRI 459 PD DVDF E R +V+++VAD YG D V+Q + +GT+ K ++D R++G+ + +R+ Sbjct: 417 PDIDVDFDPEGRMRVLDYVADKYGHDKVAQCVIYGTIKTKQALKDSARIMGYEFSMGERV 476 Query: 460 SKLIPP-----------DPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNA 508 +K +PP D AK + + E+Y++D +VK + D A +EG+ R Sbjct: 477 TKALPPAQTGGKDIAIRDIFNPDAKRYAEAREYRELYDSDADVKRITDQAMGIEGLIRQT 536 Query: 509 GKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWA 568 G HA ++ ITD +PL +G T F+ E GLVK DFLGL LT+I+ Sbjct: 537 GVHACATIMGSKPITDTSPLLERTDGT-VTTTFEYHTCETLGLVKMDFLGLSNLTVIHDT 595 Query: 569 LEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCF 628 L+ I NG+ +D IPLDDK +F++L ET VFQL+S GM+ L+K L+PD F Sbjct: 596 LKNIEN----NGKESIDYTKIPLDDKATFELLSSGETLGVFQLDSDGMRSLLKMLRPDNF 651 Query: 629 EDMIALVALFRPGPLQSGMVDNFIDRKHGREEIS--YPDVQWQHESLKPVLEPTYGIILY 686 D+ AL+AL+RPGP+ N+ RK+G+++I +P+V E+L+P+L+ TYG+I+Y Sbjct: 652 SDISALIALYRPGPMGMDSHTNYAKRKNGQQQIDPIHPEVA---EALEPILKETYGLIVY 708 Query: 687 QEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFD 746 QEQ+ A++L+GY+LG AD+LRRAMGKKKPE +AK++ F +G + +G + E A ++D Sbjct: 709 QEQIQFAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFQGMKDHGYSEEAAQAVWD 768 Query: 747 LVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWR 806 + FAGY FNK+HSAAY L+SY T +LKAHYP EFMAA++ +N +K + E R Sbjct: 769 VFLPFAGYAFNKAHSAAYGLISYWTAYLKAHYPVEFMAALLQNAKNNKDKTALYLGEARR 828 Query: 807 MGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKG-GYFRELFDL 865 MG+K+L PD+N LY + D + +G+GA++ VGE ++ II RN G G + D Sbjct: 829 MGIKVLSPDVNESLYEYSAVGD-VVRFGLGAVRNVGESAVQDIIAERNNGKGKYVNFMDY 887 Query: 866 CARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFG 925 R LNRR++E LI +GAFD + P+R AL A+ + + +A GQ D+F Sbjct: 888 IQRVPLPALNRRLVESLIKAGAFDSIEPNRRALFQVHEAAIDSYVNIKRKQAEGQFDLFA 947 Query: 926 VLAEEPEQIEQSYA-----SCQPWPEQVVLDGERETLGLYLTGHPIN--QYLKEIERYVG 978 L + + A + W ++ L+ ERE LGLY++ HP++ Q + R + Sbjct: 948 DLDGDEKSDTMGDARIDIPDIEEWDKKTKLNFEREMLGLYVSDHPLSGMQSVLAGLREMS 1007 Query: 979 GVRLKDMHPTERGKV-ITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDK 1037 RL D P + +T AGLV V+KRGN + T++D ++ MLF + Sbjct: 1008 IARLIDRAPQMEDRTQVTIAGLVTHVERKVSKRGNAWALITVEDMESSIQCMLFGKVYEA 1067 Query: 1038 YQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQL 1097 L D ++ + G V D + L+ T +V D++ + +R L I L R +D Sbjct: 1068 NAAELAVDTVIQIRGTVDVRDETVSLRATEMQVADLE---NEDSRPLVIVLPQRVLDQHR 1124 Query: 1098 LNRLRQSLEPHRSGTIPVHLYYQRADARAR-LRFGATWRVSPSDRLLNDLRGLIGSEQVE 1156 L++L ++L H G V L AR L G +R+ L +++ L G +E Sbjct: 1125 LDQLGRTLTNH-PGYCEVKLAVVDDQGAARVLTLGDRFRIKRDTSLFAEIKVLFGPHSIE 1183 >UniRef50_D1AIM1 DNA polymerase III, alpha subunit n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AIM1_SEBTE Length = 1122 Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/1161 (36%), Positives = 677/1161 (58%), Gaps = 42/1161 (3%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M FVHL++H++YS+++G+ K + +A L + LA+TD T + G+V+FY Sbjct: 1 MMREEFVHLKLHTEYSLLEGVGKIEEYLDRAKKLDIKQLAVTD-TAMFGVVEFYEKAFKK 59 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 GIKPI+G + + E + LT+LA N TGY+NL L S ++ R + + I + Sbjct: 60 GIKPIIGLEIFMDGFFSEGEYS-LTLLARNQTGYKNLCKLSSLSFSR-FNRSRNKIRYEE 117 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 180 L + +EGL +LSGG ++ S+L + + + F + +++E+ R ++ Sbjct: 118 LKKHSEGLFILSGGINSELTESILTYKYSEFKNIITKLVQDFGEYFYVEVPAAERLKDKV 177 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 L+ +E+AE VA NDV + + D +I ++I DG ++ Y+ Y+ Sbjct: 178 KLY--IEMAEECNAEYVAANDVYYPNFGDSILQKIMISIKDGTKINSENTELKYN-DLYL 234 Query: 241 RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF--PTGDMSTEDYLVKRAKE 298 +S E+M E F+ +A+ N+++IA+ CNV+ ++ P++ P G TE Y+ + + Sbjct: 235 KSAEQMKENFSGYEKAIENSLKIARECNVSFEFDKFKFPEYNLPEGKSETE-YIRELVYD 293 Query: 299 GLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPV 358 GL+++ EE++ R EY EL +IN+MG+ GYF+IV +FI+++KDNG+ V Sbjct: 294 GLKKKYG---EPLEEKITERAEY------ELDIINKMGYNGYFIIVWDFIKYAKDNGIYV 344 Query: 359 GPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHV 418 GPGRGS AGS+V+YAL IT++DP++++L+FERFLNPER+SMPD D+DF E+R+QVI++V Sbjct: 345 GPGRGSSAGSIVSYALNITEVDPIKYNLIFERFLNPERISMPDIDIDFDQEQREQVIDYV 404 Query: 419 ADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAE 478 YG + V+ IITFGT+ A+A IRDVGRVL VD+++KLIP L A + Sbjct: 405 VKKYGHEKVAHIITFGTLKARAAIRDVGRVLDINLKKVDKVAKLIPHFS--ELEDAVKNV 462 Query: 479 PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538 +L +Y +D EV+ +ID + KLEG R+A HA G+VI+ + D P Y D Sbjct: 463 RELKTLYNSDSEVRDMIDYSLKLEGKVRHASVHAAGMVISKDVLDDEIPTYSDGRASFLS 522 Query: 539 TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598 TQ+ ++E G++K DFLGL+ LTI+ +E I + K + + IPLDDK+++ Sbjct: 523 TQYQMKELEDLGILKMDFLGLKNLTILRKTMENIKITQGK----VMVLDDIPLDDKETYK 578 Query: 599 MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658 ML +T VFQ ES G++ L+++++ + FED++AL+AL+RPGPL+SGMVD+FI K+ Sbjct: 579 MLTAGDTLGVFQCESIGIRRLMQKMKIEKFEDIVALLALYRPGPLRSGMVDDFIASKNEG 638 Query: 659 EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718 I YP HE+L VL TYG+ILYQEQV++I VL+ YT+G D LRRAMGKK PE Sbjct: 639 AAIKYP-----HEALIDVLSETYGVILYQEQVLKIVNVLANYTMGEGDSLRRAMGKKIPE 693 Query: 719 EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778 MA+ R VF + A +N I + A +IF+L++KF+GYGF KSHS AYALV+Y T +LK +Y Sbjct: 694 LMAQNREVFIKRAVENNITPDKAEEIFNLIDKFSGYGFPKSHSVAYALVAYWTAYLKTNY 753 Query: 779 PAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAI 838 EF AA M+ +M N +++ ++E G+K+L PD+N Y F DG I +G+ AI Sbjct: 754 FKEFFAATMSTEMYNIDRLSLFINEARDKGVKVLLPDVNLSAYEFLAEKDG-IRFGLLAI 812 Query: 839 KGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAAL 898 K VG ++ +IE R K F D + LN++ LE + SG+ D++ +R + Sbjct: 813 KHVGINIVKKVIEVR-KNEKFDSYEDFVYNLKKEGLNKKQLEAFVFSGSLDKIHNNRKEM 871 Query: 899 MNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLG 958 +S+ L+ ++ +E Q +FG +++ S + + E ++L+ E+E LG Sbjct: 872 FSSIDRVLEWCEKKFNSEEDLQMILFGGKSQKIGLF--SMEKSEEYSESLLLEKEKEFLG 929 Query: 959 LYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKR-GNRIGIC 1017 +YL+ HP++ Y K + R + R+ + +R +VI GLV + M+TK+ G + Sbjct: 930 VYLSKHPLDNY-KLLMRTIDKTRMDSLKQGKRARVI---GLVKDIKKMITKKTGEPMARF 985 Query: 1018 TLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077 ++D + EV+ F Y + +IV G VS D+ SG L + + + + Sbjct: 986 FVEDYGTKAEVVCFPRDYINYSHEIFDGNAVIVEGTVSSDN-SGRLNIHMTNISSLKDID 1044 Query: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVS 1137 E + L I L D + Q++ ++++ + ++ G V+ A + ++ +RVS Sbjct: 1045 ENHRLKLYI-LIDEETKGQMV-QVKKVITENK-GPNQVYFAVNEAGKKEIIKLSEKYRVS 1101 Query: 1138 PSDRLLNDLRGLIGSEQVELE 1158 + + + +L L ++++++ Sbjct: 1102 ITAKFIEELSQLFSYKKIKIK 1122 >UniRef50_B1ZMU7 DNA polymerase III, alpha subunit n=3 Tax=Opitutaceae RepID=B1ZMU7_OPITP Length = 1271 Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust. Identities = 466/1258 (37%), Positives = 662/1258 (52%), Gaps = 147/1258 (11%) Query: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61 ++P FVHL VHSDYS++DG + L+K+ LGM A+A+TD NL G ++FY A A Sbjct: 4 ADPNFVHLHVHSDYSLLDGSCRIDRLLKRTNELGMKAIALTDHGNLYGAIEFYKAAKDAQ 63 Query: 62 IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111 +KP++G + + + D G + HL +LA N TGYQNL L+S A+ +G+ Sbjct: 64 VKPLIGCELYLVEHSRLEKHGRSDDDGKTIFHLGLLARNLTGYQNLLKLVSDAHLKGF-Y 122 Query: 112 AGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDE----CVAFYEEHFPDRYF 167 P D + L + GLI SG V + LL DE C F E + YF Sbjct: 123 YKPRTDIETLAKYAGGLIGFSGCLASLVPQHLLNDRE---DEARKACARFVEIFGRENYF 179 Query: 168 LELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDD 227 +EL G P++ + ++LA+ L V+ +NDV +++ D H+ + I G +DD Sbjct: 180 IELQDHGIPEQRKIIPGLLDLAQEFKLQVICSNDVHYVNHGDAGPHDAMLCIQTGSKIDD 239 Query: 228 PKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRL--GEYFLPQFP-TG 284 KR R Q Y++S EEM ++F ++P +L NT +A C + + G P++P Sbjct: 240 EKRMRFSGSQFYLKSREEMAQVFREVPASLTNTQLVADMCELAIPFPKGSERYPKYPLPP 299 Query: 285 DMSTE-------------------DYLVKRAKEGLEERLAFLF---------PDEEERLK 316 ++ T+ DY + ERL L P + L Sbjct: 300 EIKTDRGGYLQDLCVAGLRRRYGVDYFAAASHPAAAERLDKLTNLPAGEKPQPPDYTGLT 359 Query: 317 RRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKI 376 E R+ EL +I GF YFL+V +FI W+K +GVPVGPGRGSGAG LVAY L I Sbjct: 360 HEEELVVRMGYELSIIRVTGFIDYFLVVWDFIAWAKSHGVPVGPGRGSGAGCLVAYLLGI 419 Query: 377 TDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTM 436 T+LDPL F LLFERFLNPERVS PDFD+DFCM +R++VI +V + YG+D V+ IIT+GT+ Sbjct: 420 TNLDPLRFKLLFERFLNPERVSPPDFDIDFCMRRREEVINYVREKYGKDCVANIITYGTL 479 Query: 437 AAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALID 496 AK VIRDV RV P+ DR++K+IP + +TL A +L + K ++D Sbjct: 480 GAKMVIRDVSRVHNLPFAEADRLAKMIPDELNITLTDAIAKSAELSSEIARNPVAKKIVD 539 Query: 497 MARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDF 556 A LEG+ RN GKHA G++I + DF PL +EG V QFD V GL+K DF Sbjct: 540 QALVLEGMVRNTGKHAAGIIITDQPLDDFVPLTL-QEGDVTV-QFDMGAVTKLGLLKMDF 597 Query: 557 LGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGM 616 LGL+TLT+I A++ N RR +P DI IPLDD K++ ML +T VFQLES GM Sbjct: 598 LGLKTLTVIADAVD--NVRR--TADPKFDIETIPLDDPKTYAMLNAGKTVGVFQLESSGM 653 Query: 617 KDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFI-DRKHGREEISYPDVQWQHESLKP 675 + K++ +D+ A+ AL+RPGP+Q FI D G+++ S V++ H L+ Sbjct: 654 QSACKQVGVSNIDDINAICALYRPGPMQ------FIPDYARGKKDPS--TVEYPHPLLEQ 705 Query: 676 VLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEK-N 734 L+ TYGII+YQEQVM+ A++++GYTLGGADMLRRAMGKK E MAK+R F EGA++ N Sbjct: 706 SLQETYGIIVYQEQVMECAKIIAGYTLGGADMLRRAMGKKDAEAMAKERVKFVEGAKRVN 765 Query: 735 GINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNT 794 I+ + A +IFDL+ KFA YGFNKSHSAAYALVSYQT +LKA+YP +FMAAV+TA++ N Sbjct: 766 AIDEKKANEIFDLLNKFASYGFNKSHSAAYALVSYQTAFLKANYPVQFMAAVLTAELGNA 825 Query: 795 EKVVGLVDECWRMGLKILPPDINSGLYHFH----------------------------VN 826 EKV + E MG+ +L PDIN F +N Sbjct: 826 EKVSHFIAEAEAMGITVLGPDINESREMFTPVLRGASSPRAQSPESRVQSQADSELSALN 885 Query: 827 DD----------GEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNR 876 G I +G+ IKGVGE + IIE R+K G F + D AR D + +N+ Sbjct: 886 SQLSAAEADRAGGAIRFGLAGIKGVGELAAQKIIEERDKNGAFCDFDDFAARMDGRAVNK 945 Query: 877 RVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEE--PEQI 934 RVLE L+ +GAFD G R L + + AL A+ A GQ + AE+ P++ Sbjct: 946 RVLEHLVKTGAFDYSGAPRKPLFDGIDAALATVAARARDRAAGQHSFLDMFAEDLAPKKN 1005 Query: 935 ---------------------------EQSYASCQPWPEQVVLDGERETLGLYLTGHPIN 967 Q S + L E+E LG Y++GHP+N Sbjct: 1006 GKNGSNGHGAATPSSRPASGSDFSTLDSQLSTSSDDFTSTERLTFEKELLGFYVSGHPLN 1065 Query: 968 QY---LKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNR-IGICTLDDRS 1023 + + I+ Y L TE G+V ++K+ NR TL ++ Sbjct: 1066 VFAGLTEAIDTYPITELLNQGDRTE----FRLCGIVSGIAKRLSKKDNRPWASFTLATKA 1121 Query: 1024 GRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARG 1083 G L + +F D Y +L ++ +++V G + + G ++ +E ++ R Sbjct: 1122 GALPLNMFADGYANYGTVLAENALVLVQGNIIVN--QEGARVNVKECYPLENQIAGLVRK 1179 Query: 1084 LAISLTDRQID-DQLLNRLRQSLEPHRSGTIPVHL---YYQRADARARLRFGATWRVS 1137 + L + ++LR +L+ +SG + L + R A + TW+V+ Sbjct: 1180 VTWLLRPAHPELAGFFHQLRATLD-KQSGDTRLELGFAFPNRFAPCAEISTALTWKVN 1236 >UniRef50_C7MKU1 DNA-directed DNA polymerase III PolC n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MKU1_CRYCD Length = 1165 Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust. Identities = 431/1181 (36%), Positives = 647/1181 (54%), Gaps = 61/1181 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAG------HG 59 FVHL H++YS++DG +V++AA LGMPA+AITD + G+ + A G Sbjct: 3 FVHLHNHTEYSLLDGATHVKDMVQRAADLGMPAVAITDHGVMSGVPELEDACISVEKETG 62 Query: 60 AGIKPIVGADFNVQCDLLGDELT--------HLTVLAANNTGYQNLTLLISKAYQRGYGA 111 +KPI G + D DEL H+ +LA N GY NL L+S+++ + Sbjct: 63 IKVKPIFGCEIYFTTD---DELKREGKPRLYHMILLAKTNEGYHNLVKLVSESHVDNF-Y 118 Query: 112 AGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNS----ALVDECVAFYEEHFPDRYF 167 P L ++GLI S G + R L G + + +E P ++ Sbjct: 119 YKPRTTFAMLKRYSKGLIGTSACIAGIIPRLLDLGQYEDAMSWARKLAGLFE---PGDFY 175 Query: 168 LELIRTGRPDEESYLHAAV-----ELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDG 222 LEL G + + + ++A+ GL +ATND ++ D A +I + I G Sbjct: 176 LELQDQGVVTDLGHTQHELNVQLSQIAKECGLKTIATNDFHYLTHDDAKAQDIILCIGTG 235 Query: 223 FTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFP 282 +DD R R + Q YM++EEEM AD PEA NTVEIA++CNV + + LP+FP Sbjct: 236 SQVDDTNRMRFSNDQFYMKTEEEMRAALADFPEACDNTVEIAEKCNVVLER-DSILPRFP 294 Query: 283 TGDMSTE-DYLVKRAKEGLEERLA-FLFPDEEERLKRRPEYDERLETELQVINQMGFPGY 340 + TE + K+ + GL R +E + RPE ER E E QVI + GFP Y Sbjct: 295 VPEGETEVSWFRKQCESGLVRRYGEGKVQTFQELAQVRPEVAERYEHEAQVIIKQGFPAY 354 Query: 341 FLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMP 400 FLIV E+I W+KD+G+ VGPGRGS AGS+V YA+ ITDLDPL + LLFERFL+ ERV MP Sbjct: 355 FLIVQEYIMWAKDHGIGVGPGRGSAAGSIVTYAMGITDLDPLPYGLLFERFLSEERVEMP 414 Query: 401 DFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIS 460 D DVDF + R VI+HV + YG D +S +ITFG + AK +RD RVLG+PYG DR+ Sbjct: 415 DIDVDFDDQHRQDVIDHVREFYGEDHISGVITFGKLQAKNAVRDAARVLGYPYGVGDRLC 474 Query: 461 KLIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPT 520 KLI + G+T+ +A E P L YE++ + +A+ID A+ +EG R G HA +I Sbjct: 475 KLIGNELGITIQQALETNPDLKAAYESEADAQAVIDAAQSIEGHVRGEGVHACATIICRD 534 Query: 521 KITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNG 580 + D P+ D +G +TQ+D GL+K DFLGLRTL +I+ A + + R + Sbjct: 535 PLADHVPVKRDTKGGGIITQYDGHYTPELGLLKMDFLGLRTLGVISRACDNVKARHGIDI 594 Query: 581 EPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRP 640 +P +AI L+D ++F ++ +FQ+E L R++P F D++A +AL RP Sbjct: 595 DP----SAISLEDPEAFKLMCGGNMDGLFQVEGNLYVTLFARMKPRRFSDIVASIALNRP 650 Query: 641 GPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGY 700 GPLQ+G VD+++DR G+ ++ Y D + L+P+LE TYG I+YQEQ+MQI+ +SG+ Sbjct: 651 GPLQNGFVDDYVDRVSGKSQVVYYD-----DRLRPILEETYGTIVYQEQLMQISMRMSGF 705 Query: 701 TLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSH 760 + G AD LR+AMGKKK E M + +GA NG + E++ KI+ EKFA Y FNKSH Sbjct: 706 SAGKADKLRKAMGKKKLEVMKALEEDWNQGAVDNGYSLEVSKKIWSDAEKFAQYAFNKSH 765 Query: 761 SAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGL 820 SA YA++ +T +LKAHYP EFMAAV+++ + N +K++ + C G+++LPPDINS Sbjct: 766 SACYAVLVMRTAYLKAHYPNEFMAAVLSSYLGNNDKLIHYIASCAASGIQVLPPDINSSN 825 Query: 821 YHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLE 880 F D+G + +G+ ++GVGE +E II R+ G + L D R D++ NR+ LE Sbjct: 826 VEFTPTDEG-VRFGLAGVRGVGEKVVEEIIAERDTHGPYTSLHDFVHRLDSRCYNRKTLE 884 Query: 881 KLIMSGAFDRLGPHRAALMNSLGDA--LKAADQHAKAEAIGQADMFGVLAEEPEQIEQSY 938 LI +GAFD G R LM + + L++A + K GQ MF + + + + Sbjct: 885 ALIKAGAFDSTGYTRKQLMYFIDETPLLESAAKRQKDRNCGQTSMFDLFGDSD---DSGF 941 Query: 939 ASCQP------WPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERG- 991 + P W ++ +L E++ L +Y++ HP+ Y + + + RL D+ E Sbjct: 942 SEETPAPDGVEWDKRTLLAFEKDILKIYVSDHPLRPYAGLLSK-LSKFRLGDLADREHDI 1000 Query: 992 KVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVS 1051 K T G++ + +TK+G R+ TL+D +G +E + F + + + +D I+ V Sbjct: 1001 KNATFVGMISSVVTKLTKKGTRMATFTLEDTTGHVEAVCFK--YEDFANAIAEDTIVKVK 1058 Query: 1052 GQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSG 1111 G+ D + + + DE + R +A+S+ R + + L Q L + G Sbjct: 1059 GKYEVGDRNQLMAFEVERLDLADEPTDVAPRTVALSVMQRDLSQSNMQFLTQILRKY-PG 1117 Query: 1112 TIPVHLYYQRADARARLRFGATWRVSPSDR-LLNDLRGLIG 1151 + L+ + D R + R V D+ L +L+ L G Sbjct: 1118 QDSLVLFVSQHDGR-KYRANLPLTVDSHDKALFGELQSLFG 1157 >UniRef50_UPI0001C3188F DNA polymerase III, alpha subunit n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C3188F Length = 1178 Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust. Identities = 437/1194 (36%), Positives = 668/1194 (55%), Gaps = 75/1194 (6%) Query: 8 HLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVG 67 HL VHS+YS++DG K L +AAA PAL +TD + G V+ Y A IKP++G Sbjct: 11 HLHVHSEYSLLDGACKIDALAARAAAFDQPALGLTDHGVMNGSVEMYKACKKHDIKPLLG 70 Query: 68 ADFNVQCDLL----GDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIE 123 + V D E HLT+LA N+ GY+NL L S Y G P +D + + + Sbjct: 71 CEVYVVDDRHFRAGRAERNHLTLLAQNDVGYRNLVKLSSTGYLEGLHRGKPGVDFEIMSQ 130 Query: 124 LNEGLILLSGGRMGDVGRSLLRGNS----ALVDECVAFYEEHFPDRYFLELIRTGRPDEE 179 +EG+I L+G + L+ A VD+ + + ++ + E+ + G D++ Sbjct: 131 HSEGIIALTGCLASRFCQRLVNDRPDEARAHVDDLMNIFGR---EQVYFEVQKNGIADQD 187 Query: 180 SYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQY 239 V +A G P+V T DV ++ D+ H + + TL +PK + + + Y Sbjct: 188 KANEGIVRIAREVGRPLVGTGDVHYLRREDYHHHTALLCVQTKSTLAEPKMTFDTN-EFY 246 Query: 240 MRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTED-YLVKRAKE 298 ++S +EM + FA+ P+AL T+E+A+RC V + LG +P +PT + E YL + + Sbjct: 247 LKSNQEMADAFAEWPDALPTTLEVAERCQVEIPLGGQLIPSYPTPNGEEERAYLRQLVLD 306 Query: 299 GLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPV 358 GL R P ER+E EL VI++MGF YFLIV +F+++SK+NGV V Sbjct: 307 GLHLRYGNPPPAAAV---------ERMEMELAVIDKMGFNAYFLIVWDFVRYSKENGVAV 357 Query: 359 GPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHV 418 GPGRGS AGS+VAY L ITD+DPL +DLLFERFLNPERVSMPD D+DF + R++VI +V Sbjct: 358 GPGRGSAAGSIVAYCLAITDVDPLAYDLLFERFLNPERVSMPDIDIDFSVRGRERVIRYV 417 Query: 419 ADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFE-- 476 + YGR++V+QIITFG M +A RD RVLGH YG D+++KLI PDP M +F+ Sbjct: 418 TEKYGRESVAQIITFGKMFPRAATRDAARVLGHDYGAGDKLAKLI-PDPIMGRPPSFDDC 476 Query: 477 ---AEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEE 533 EP E+ +++ + ++D+AR LEG+ RN+ HA VVIA +TD PL + Sbjct: 477 LQPGEPLRGEV-DSNPVSRQIVDVARGLEGIVRNSSIHAAAVVIADRPLTDIVPLQLADA 535 Query: 534 GK--------HPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLD 585 G VTQ+ VE GL+K DFLGLR L +I AL++I + G P D Sbjct: 536 GTDDRGDKVYRTVTQYSMKPVEELGLLKMDFLGLRNLDVIEDALDIIER---STGTRP-D 591 Query: 586 IAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQS 645 + +PLDD K++DM+ R ++ VFQ ES GM++ +K+++P ED+IAL AL+RPG + Sbjct: 592 MTTLPLDDGKTYDMIARGDSVGVFQFESEGMRETLKKVRPTELEDLIALNALYRPGAMDQ 651 Query: 646 GMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGA 705 + + K E ISYPD E L+P+LE T G+I+YQEQ MQIA+ L+G++ A Sbjct: 652 --IPTYARGKRNPESISYPD-----ERLRPILESTNGVIVYQEQAMQIAKSLAGFSGAKA 704 Query: 706 DMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYA 765 D LR+A+GKK MA+ + F EG + + ++ ++ EK A Y FNK+H+A YA Sbjct: 705 DDLRKAIGKKNRAAMAELKPEFIEGCRASRTSEQVIEWLWATNEKSADYSFNKAHAACYA 764 Query: 766 LVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHV 825 L++Y+T WLKA++PAE+MAA++++ MD +KV V + +MG++ILPPD+N + F V Sbjct: 765 LIAYRTAWLKANHPAEYMAALISSVMDTKDKVPFFVAQTEQMGIEILPPDVNESDHDFMV 824 Query: 826 NDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMS 885 DG I +G+ A+KGVG +E I AR + G F L+D C R D K +N++ +E LI Sbjct: 825 V-DGNIRFGLDAVKGVGYAAVEGIKRAREEDGPFTSLWDFCERVDGKAVNKKAIEALIKC 883 Query: 886 GAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWP 945 GAF G R ++ L A A + + IGQ +F L EP + AS P Sbjct: 884 GAFSSTGASRKGMLGVLEQAQAAGQKAQQDALIGQGSIFD-LGPEPGAANGAAASAFAAP 942 Query: 946 -----------EQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVI 994 + +L E+E++GL+++ HP+ + ++E R L ++ + G + Sbjct: 943 SHPGIPAEEFDQAEMLAAEKESIGLFISAHPL-KAVREAMRVKVDCTLAELSDRKDGDWV 1001 Query: 995 TAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQV 1054 T G++ + + TKRG+ + TLDD G +E+++F L ++ + D ++ + G+V Sbjct: 1002 TVGGIITQCKRLRTKRGDHMMFATLDDLEGTVEILIFGRVLAASEEAFQMDSVITLRGRV 1061 Query: 1055 SFDDFSGGL------KMTAREVMDIDEAREKYAR------GLAISLTDRQIDDQLLNRLR 1102 D S ++ A +I++ARE+ A+ + + L + +++ L+ Sbjct: 1062 DHKDASKTTVVVQDAELFAPSEAEIEKAREEAAKIPTGPPPVRLRLDCTALRAGVIDDLK 1121 Query: 1103 QSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSEQVE 1156 E ++ V L + + LR G T++VS + L +L ++GS +E Sbjct: 1122 AVFETFPGESVVV-LEMHTSGGQRTLRLGPTYKVSRNAALQAELDHVLGSAMLE 1174 >UniRef50_D2LTB4 DNA polymerase III, alpha subunit n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LTB4_BACS4 Length = 1128 Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/1163 (36%), Positives = 673/1163 (57%), Gaps = 50/1163 (4%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL VHS+YS++ K LVK+A LG ALAITD + G++ FY A IKPI Sbjct: 3 FVHLHVHSEYSLLRSTGKLEELVKQAKHLGYEALAITDIDAMYGVIPFYKACLKNNIKPI 62 Query: 66 VGAD--FNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIE 123 +G + + D + + L LA NN GYQ+L L ++A ++ + GP + + L Sbjct: 63 IGVELAYVKNQDEVKKDHHRLLFLAENNEGYQSLIRLTTRAQEKS-SSFGPYVTYEELQA 121 Query: 124 LNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRTGRPDEESYL 182 + G+I +S G V + + A + + + F + FLEL R +E L Sbjct: 122 NSNGVIAISPFAEGLVQQYIYDKQDASALQHFEWLQSIFGKENVFLELQNHWRQEEREKL 181 Query: 183 HAAVELAEAR--GLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQY- 239 A + + + V+A+N + F DAH +I G LD+ P +YS +Y Sbjct: 182 LAISNWLKGKEDAIRVIASNHIHFTHKEQHDAHRAIQSIRLGIKLDE--LPHDYSSSEYY 239 Query: 240 MRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMST-EDYLVKRAKE 298 ++S +EM LF EA NT+ +A +CNV + LG LP FP + +T +YL + + Sbjct: 240 LKSIDEMHHLFKKDGEASRNTLRVADKCNVKIELGNMILPHFPLPNETTATEYLRELCYK 299 Query: 299 GLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPV 358 G++ER + P EE +RL+ EL+VI++M + YFLIV +F++++ + + Sbjct: 300 GIQER--YENPSEETW--------KRLDYELEVISEMKYEDYFLIVADFMRYAHEKKILT 349 Query: 359 GPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHV 418 GPGRGS AGS+VAY LKIT++DP+++ L+FERFLN ER+SMPD D+DF +RD+VI +V Sbjct: 350 GPGRGSSAGSIVAYVLKITNVDPMKYGLIFERFLNRERISMPDIDIDFPDNRRDEVIRYV 409 Query: 419 ADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAE 478 + YGR V+QIITFGT+AAKA IRDVGRVLG +D+ISK IP P +TL A + Sbjct: 410 KEKYGRTHVAQIITFGTLAAKAAIRDVGRVLGIELPIIDKISKSIPSRPNITLENALKES 469 Query: 479 PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538 L + E++E+V L +A+++EG+ R++ HA G+V++ +T+ PL + + + Sbjct: 470 TVLQGMIESEEKVAELFTIAKEVEGLPRHSSIHAAGIVMSKEPLTNVVPLQIGNDEMY-L 528 Query: 539 TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598 TQF D+E GL+K DFLGLR L+ I L++I+ ++ + +++ IP D +F Sbjct: 529 TQFPMGDIEDIGLLKMDFLGLRNLSFIEQILKLIHNQQHID----IELNNIPFHDVNTFT 584 Query: 599 MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658 +L + +T+ VFQLES GM+ ++KRL+P FED++A+ AL+RPGP+++ + +I R H Sbjct: 585 LLGKGQTSGVFQLESTGMRSVLKRLKPTEFEDIVAVNALYRPGPMEN--IPVYIRRLHKE 642 Query: 659 EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718 E+++YP H SL+ +L PTYG+++YQEQ+MQIA ++G++LG AD+LRRA+GKKK + Sbjct: 643 EKVTYP-----HPSLEEILSPTYGVLIYQEQIMQIASKMAGFSLGEADILRRAVGKKKRD 697 Query: 719 EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778 + +QR F +G+ G + + A ++++L+ +FA YGF +SH+ AY++++Y +LKA+Y Sbjct: 698 VLEEQRQKFVQGSISKGYDEKEANEMYNLILRFADYGFPRSHAVAYSIIAYYLAYLKANY 757 Query: 779 PAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAI 838 EFM A+M + + + +K+ + E R G+K+ PP I F + + +I G+ AI Sbjct: 758 QLEFMTALMGSVIHHHDKLGEYITEARRSGMKVHPPSIQQSEAQFSIKNK-DIWIGLHAI 816 Query: 839 KGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAAL 898 K VG ++AI+E R K F LFDLCAR T+ L +R L+ LI++GA D + RA L Sbjct: 817 KNVGVQAVQAILEERAKSD-FDSLFDLCARIPTRLLPKRALDALIVAGALDCIHDDRAQL 875 Query: 899 MNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLG 958 + S+ DA++ ++ + E Q ++F ++PE Y S P + L+ E++ LG Sbjct: 876 LASVDDAIEYGEKLREQEKNAQTELFIEEVKQPE-----YMSVPPLSSKDRLNFEKQVLG 930 Query: 959 LYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICT 1018 Y +GHPI L +E + RL + E+ + AG++ +V+ TK+G+++ Sbjct: 931 FYASGHPIESELALVESF---GRLSVIDAKEKKSTLRIAGMIEDVKVIKTKKGDQMAFAQ 987 Query: 1019 LDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEARE 1078 L D +G +++ F + + L+K ++ V G V + G K+ + I + Sbjct: 988 LSDETGEIDLTFFPEVYKDCRLKLQKGELVFVQGNVQ--EHKGEGKVVVEKCTTISLLKS 1045 Query: 1079 KYARGLAISL---TDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWR 1135 K A+G +L + + + L L++ LE G + V + Y+R + L W Sbjct: 1046 KKAKGTEPTLYLKINALHEKKGLTALKKELE-MSPGNVSVIIVYER--TKKALHLSEMWN 1102 Query: 1136 VSPSDRLLNDLRGLIGSEQVELE 1158 VS +RLL LR L+G E V L+ Sbjct: 1103 VSADERLLLKLRSLLGKENVYLK 1125 >UniRef50_Q2GEN2 DNA polymerase III, alpha subunit n=2 Tax=Neorickettsia RepID=Q2GEN2_NEOSM Length = 1077 Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/1049 (40%), Positives = 604/1049 (57%), Gaps = 87/1049 (8%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M FVHLRV SDYS++ + K +V A A GMPA+A+TD + G ++F + Sbjct: 1 MRRQTFVHLRVRSDYSLLRAVTKPRRIVDLARAAGMPAVALTDIDTMAGALEFAEYAKAS 60 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 GI+PI+G D ++ + + + + ++A N GY N+ L R + + Sbjct: 61 GIQPIIGIDLSISHNRVD---SRVLLIAKNEEGYHNMIKLSGIVSLRR-------VALNE 110 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 180 + ++GLILL G D S LV + ++ F F+E+ R G E Sbjct: 111 VFTHSKGLILLLGEFFIDAINSYSIDAETLVSDL----KQVFGKDLFVEIQRLGNQSAEE 166 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 L ++L +P VATNDV F D+ +AH++ I ++D R +YSP+ Y Sbjct: 167 KL---IQLGYEHNIPFVATNDVLFPDTDFREAHDVLTCIGSLTYVNDINRV-HYSPESYF 222 Query: 241 RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKEGL 300 +S EEM LFAD+ EAL NTV IA+RC+ + LP+F +M D L + + GL Sbjct: 223 KSAEEMIALFADLKEALHNTVLIARRCSFMPEVRSPILPKFEC-EMDESDELRRLSYIGL 281 Query: 301 EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360 R+ P Y +RLE EL +I M + GYFLIV +FI+WSK NG+ VGP Sbjct: 282 HRRMGADVPQN---------YLDRLEYELGIIIDMNYAGYFLIVADFIRWSKANGIVVGP 332 Query: 361 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420 GRGSG GS+VA+ L IT LDPL+F L FERFLNP RVSMPDFDVDFC EKR VIE+V Sbjct: 333 GRGSGVGSIVAWCLGITGLDPLKFALFFERFLNPVRVSMPDFDVDFCQEKRHLVIEYVRK 392 Query: 421 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478 YG V+QI+TFGT+ +A +RDVGRVL PYG VDRI K+IP +P ++L +A + Sbjct: 393 KYGH--VAQIMTFGTLQPRAALRDVGRVLQLPYGRVDRICKMIPNNPANPISLQEAINLD 450 Query: 479 PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538 L E DE + L+D+A KLEG R+ HA G+VI+ T I D+ P+Y D+E PV Sbjct: 451 KDLQRESEDDESIAKLLDLALKLEGTLRHTSTHAAGIVISDTPIEDYLPVYHDKESDIPV 510 Query: 539 TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598 TQ+ VE AGL+KFDFLGL+TLT+IN A ++ R KN P DI +IPLDDK+++D Sbjct: 511 TQYSMKYVEKAGLIKFDFLGLKTLTVINQACLLV---RLKN--PNFDIDSIPLDDKRTYD 565 Query: 599 MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658 +L VFQL++ M + +KRL PDCFED+IAL++L RPGP+ + + +I RKHG+ Sbjct: 566 LLSAGNAIGVFQLDNAYMCETLKRLHPDCFEDIIALISLNRPGPMAN--IPTYIARKHGK 623 Query: 659 EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718 E + YP H L+ L+ T+G+++YQEQVM++ ++L+GYTL AD+LRR MGKK Sbjct: 624 EAVKYP-----HPLLESSLKETFGVVIYQEQVMEMVRLLAGYTLAEADILRRVMGKKIRA 678 Query: 719 EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778 EM++Q F EGA++NGI E A +IF+++EKFAGYGFNKSH+AAYAL+SYQT +LKA++ Sbjct: 679 EMSEQAEKFVEGAKRNGIETERAQEIFEMIEKFAGYGFNKSHAAAYALISYQTAFLKANF 738 Query: 779 PAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAI 838 P EF A + ++ +T+K+ L+ + G+ ILPPDIN F + D+ I Y + A+ Sbjct: 739 PIEFTTAALNLELHHTDKLAILIQDAKNYGITILPPDINKSKILFSIEDNA-IRYSLAAL 797 Query: 839 KGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAAL 898 K VGE AI + F + +L D K ++R+ +E LI SGA D L P R+ L Sbjct: 798 KNVGEAAASAI----QRRSPFATIPELQRCLDGKIVHRKAVESLIKSGATDVLSPDRSGL 853 Query: 899 MNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLG 958 + L + + D A Q +F + +PE+ + +PW E + G Sbjct: 854 YSCLKELVGKEDDGA------QMTLFDISVNKPEK------TVKPWNFFERTQCEFDAFG 901 Query: 959 LYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNR----I 1014 +L HP+ Y K ++ + P + VIT + + RG+R + Sbjct: 902 FFLFDHPLFPYRKFLK----------LSPNQIAGVIT--------ELRIRSRGDRKFAVM 943 Query: 1015 GICTLDDRSGRLEVMLF-TDALDKYQQLL 1042 + T++D VM + +D +D ++L Sbjct: 944 HVSTVND---IYTVMFYESDVIDSRRELF 969 >UniRef50_A8VX11 DNA polymerase III, alpha subunit n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VX11_9BACI Length = 1126 Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/1125 (36%), Positives = 635/1125 (56%), Gaps = 51/1125 (4%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 + HL VH+++S++ L + L ++A++ G ALA+TD N+ G V FY A GIKPI Sbjct: 3 YAHLHVHTEFSLLSSLIRIDDLTEQASSQGFTALAMTDLNNIYGAVSFYRACRARGIKPI 62 Query: 66 VGADFNVQCDLLG---DELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLI 122 +G + +++ L D T L + A + GYQ+L L++ A R A P + D L Sbjct: 63 LGVELSMERLSLNSGRDVPTSLLLYAKSFRGYQSLVRLVTMACAR---EAEPYVTMDELE 119 Query: 123 ELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEE----HFPDRYFLELIRTGRPDE 178 E L+++S GR L +E AF + + ++E+ E Sbjct: 120 AEGEELVVISPF---SEGRMQLLAEEGRDEEASAFLKTIRNVFGEEDVYVEIQNHWLRWE 176 Query: 179 ESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQ 238 + + +PVVATN V ++ F A + AI DG +++ +P Sbjct: 177 RERMQRIRKWLTNERVPVVATNHVHALEPDQFGALQTLQAIKDGVRIEEIDESLR-APDM 235 Query: 239 YMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKR-AK 297 Y+++EEEM E FA AL T EI +C V + LG LP +P D T L++ + Sbjct: 236 YLKNEEEMREQFAKWNTALDVTEEIVAKCEVELPLGGQILPSYPVSDGETAASLLRNWCE 295 Query: 298 EGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVP 357 +GL ER + P+E+ R ERLE ELQVI+ MG+ YFLIV +F+ ++ NG+ Sbjct: 296 KGLYER--YHAPEEKHR--------ERLEKELQVIHDMGYEDYFLIVADFMDYAHRNGIL 345 Query: 358 VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEH 417 GPGRGS AGSLVAY L+ITD+DP+ +DLLFERFLNPERVSMPD D+DF RDQVI + Sbjct: 346 TGPGRGSAAGSLVAYLLRITDVDPILYDLLFERFLNPERVSMPDIDIDFSDLDRDQVIHY 405 Query: 418 VADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEA 477 V + YG V+QI+TFGT+AAKA +RD RVLG P VDR+SKLIP P MT+ A E Sbjct: 406 VHERYGASKVAQIVTFGTLAAKAALRDTARVLGIPTADVDRLSKLIPARPNMTITAALEE 465 Query: 478 EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHP 537 P + + L+ A +EG+ R+ HA GVV++ +TD PL +G Sbjct: 466 APAFNKAIREMPKGDLLLKTALDIEGIARHTSIHAAGVVMSKDPLTDIVPLQPSNDGL-T 524 Query: 538 VTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSF 597 +TQF D+E GL+K DFLGLR L+ + E + + K GE LD+ +PL+D++ F Sbjct: 525 ITQFPMGDLEDLGLLKMDFLGLRNLSFMERIAETV---KEKTGE-ALDLTRLPLEDERMF 580 Query: 598 DMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHG 657 +L + ET +FQLES+GM+ ++K+L+P+ FED++A+ AL+RPGP++ + +I RK+G Sbjct: 581 ALLGKGETNGIFQLESQGMRRVLKQLKPERFEDIVAVNALYRPGPMEQ--IPLYIRRKNG 638 Query: 658 REEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKP 717 E ++YP HE L+ +L PTYG+++YQEQ+MQIA ++G++L ADMLRRA+ KKK Sbjct: 639 EEPVTYP-----HEDLREILAPTYGVMIYQEQIMQIASKMAGFSLAEADMLRRAVSKKKK 693 Query: 718 EEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAH 777 EE+ + R++F EGA G + A ++++L+E+FA YGFN+SH+ AY+++S + WLK Sbjct: 694 EELERSRTLFVEGAVGRGYAEDEATRVYELIERFANYGFNRSHAVAYSMISCRLAWLKTV 753 Query: 778 YPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGA 837 +P FMAA+M + +K+V + E +MGL++ P + F VN +GEIV + Sbjct: 754 HPEAFMAALMEQSVHAPDKLVRYIAEAKQMGLRVSGPSVQRSSRRFTVN-NGEIVMALQV 812 Query: 838 IKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAA 897 I+ G II AR + G F LFD C R K ++R+ +E LIM+GA D G R + Sbjct: 813 IRHTGHHAAAEIIRAREEEGPFGSLFDFCKRVSLKIVSRKTVESLIMAGAMDDFGVDRTS 872 Query: 898 LMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETL 957 L SL DA + D+ A+ G E E+ E Y LD ERE + Sbjct: 873 LFASLEDAFQFGDEDAE----------GFSLFEQEEGEPDYRQGGRMTLMDKLDEEREVM 922 Query: 958 GLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGIC 1017 G YL+GHP+ L+ ++ Y L+ M + AG++ R++ TK+G+++ Sbjct: 923 GFYLSGHPVEDDLELLKTYKRQSILEAMGVASEKMTVRLAGMIEHIRLIRTKKGDQMAFV 982 Query: 1018 TLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077 ++ D +G +++ +F + L YQ L+K+ ++ G++ + + + L + ++ +R Sbjct: 983 SMSDETGAMDITVFPEQLKHYQMALKKNGLIFTEGKMQWRNDAWNLILDKAVSLETLRSR 1042 Query: 1078 --EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ 1120 E+ L I + Q + + N++ ++L G +PV L ++ Sbjct: 1043 VKEEAQPTLYIRFSHAQEKEGVPNKV-EALLQDTPGEVPVVLKFE 1086 >UniRef50_A5TY39 DNA-directed DNA polymerase III alpha subunit n=10 Tax=Fusobacterium RepID=A5TY39_FUSNP Length = 1133 Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/1094 (36%), Positives = 637/1094 (58%), Gaps = 40/1094 (3%) Query: 3 EPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGI 62 E FVHL +H++YS+ +G+ + KA LGM +LA+TD+ N+ ++FY GI Sbjct: 2 ENNFVHLNLHTEYSLSEGVNSIDSFLVKAKELGMTSLAVTDYANMFCAIEFYQKAKKMGI 61 Query: 63 KPIVGADFNVQCDLLGDE--LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 KPI+G + + DE + LT+LA N GY+NL L S+ Y+ + +++ Sbjct: 62 KPIIGLELPISN---RDEQNIFSLTLLAKNYNGYKNLVKLASELYKNNENRELKL-NKEI 117 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNS-ALVDECVAFYEEHFPDRYFLELIRTGRPDEE 179 L E ++ LI LS G++G+++L +S V++ + Y E F F I+ E Sbjct: 118 LKEHSQDLIALSSSMNGEIGKAILTNSSDEKVNKIIDEYIEIFSKENFYLEIQANELSET 177 Query: 180 SYLHAAV-ELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQ 238 ++ +LA+ L +VATN+V ++D ++ +I + I G + + R R S + Sbjct: 178 KIINDRFYDLAKFHDLELVATNNVYYVDRDGYELQDIIICIQSGLKVKEKNRKRAISKEL 237 Query: 239 YMRSEEEMCELFAD-IPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAK 297 Y++S++EM + +A+ N IA CNV + G QFP ++ +E Sbjct: 238 YLKSKDEMKRFLGEKFEKAIENANYIADLCNVEIGFGNL---QFPYYEVPSE-------Y 287 Query: 298 EGLEERLAFLFPDEEERLKRR---PEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDN 354 G++E L + ++L + + +RLE EL VI +MG+ GYF++V +FI ++K Sbjct: 288 SGMDEYLKTICHTNIKKLYKEDLTKDILDRLEYELSVIIKMGYSGYFIVVWDFISYAKRR 347 Query: 355 GVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQV 414 G+PVGPGRGS AGSLVAY L IT +DP+ ++LLFERFLNPER+SMPD D+D C E+RD++ Sbjct: 348 GIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERISMPDIDIDICRERRDEL 407 Query: 415 IEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKA 474 I++V YGRD V+ IITFG M A+A IRD+GRVL +D++SKL+ P L K Sbjct: 408 IDYVVHKYGRDRVAHIITFGRMKARAAIRDIGRVLDIDLKKIDKLSKLVS--PFQALEKT 465 Query: 475 FEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEG 534 + ++ ++Y D E++ +ID+A ++E R+ HA G++I + P+Y DE+ Sbjct: 466 LKENVEVAKLYTTDIELQKVIDLAIRIENTVRHVSTHAAGILITKEDLDKTVPIYLDEKE 525 Query: 535 KHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDK 594 TQ+ ++E GL+K DFLGL+ L+ I ++ I K + +D+ IPLDDK Sbjct: 526 GVIATQYQMKELEELGLLKIDFLGLKNLSNIQRTIDYIKKYK----NVDIDLYKIPLDDK 581 Query: 595 KSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDR 654 K F ML ++T VFQLES G++ ++KRL+PD FED++AL+AL+RPGPLQSGMVD+FI+R Sbjct: 582 KVFHMLSLGDSTGVFQLESPGIRKIMKRLKPDKFEDIVALLALYRPGPLQSGMVDDFINR 641 Query: 655 KHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK 714 K+G+E+I YP H++L+ +L+ TYG+ILYQEQVM+IA ++ Y+LG AD+LRRAMGK Sbjct: 642 KNGKEKIEYP-----HKNLEIILKETYGVILYQEQVMKIASYMADYSLGEADLLRRAMGK 696 Query: 715 KKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWL 774 K M + R F E A NG E + +IF+L++KFAGYGFNKSHS AYA++SY T + Sbjct: 697 KNFAIMRENREKFIERAIHNGYTVEKSEEIFELIDKFAGYGFNKSHSVAYAMISYWTAYF 756 Query: 775 KAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYG 834 KA+YPA + AAVMT+++ T + ++ G+++ P++NS +F V ++G I Y Sbjct: 757 KAYYPAFYYAAVMTSEISETGDIAYYFNDAKEHGVRVYSPNVNSPSAYFEVKNEG-ITYS 815 Query: 835 IGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPH 894 + AIK G + I+E G + L + R +N+R LE LI+SGA D + + Sbjct: 816 LAAIKNFGLTMAKKIVEDVKLNGKYTTLEEFVFRNKKNGMNKRALEALILSGALDEIKGN 875 Query: 895 RAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGER 954 R S+ L + + K + I Q ++FG A+ ++ + + E+ L+ E+ Sbjct: 876 RKEKFLSIDKVLDYSSKAPKTDEIQQMNLFGAAAKTIDKFNLAISEDFTLDEK--LNKEQ 933 Query: 955 ETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRI 1014 E LG YL+ HP+++Y K+I +L + E +VI G + + +TK+ ++ Sbjct: 934 EFLGFYLSSHPLDRY-KDILTTFSIKKLSEF-DLEGNQVIKTFGTITNLKKTITKKEEQM 991 Query: 1015 GICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSG--GLKMTAREVMD 1072 + L + + F +++ + + + + + G++ D++ G K+ ++M+ Sbjct: 992 AMFNLSCYDRTISCIAFPRVYERFITEIIEKKTVYIEGKIQIDNYKGESTSKLLVDKLME 1051 Query: 1073 IDEAREKYARGLAI 1086 +D+ E A+ L I Sbjct: 1052 LDKIFEYPAKKLFI 1065 >UniRef50_C4YXX0 DNA polymerase III, alpha subunit family n=1 Tax=Rickettsia endosymbiont of Ixodes scapularis RepID=C4YXX0_9RICK Length = 1245 Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust. Identities = 434/1194 (36%), Positives = 629/1194 (52%), Gaps = 148/1194 (12%) Query: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 P F+HLR S YS ++ +V+ A++ M A+ + D NL G ++F G++ Sbjct: 3 PEFIHLRTQSSYSFLESALTIEKVVELASSNKMSAICLADKGNLFGSLEFALYAVKKGLQ 62 Query: 64 PIVGADFNVQCDL----------------------------------------LGDELTH 83 PI G N++ ++ GD Sbjct: 63 PIHGVILNIKYNIQHHSASFRQDEFKSKPAERTKVREQRLDSKNSLVSSLLNDAGDIFAQ 122 Query: 84 LTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSL 143 + ++A + TGY+NL L S + + ID + LIE EGLI L G VG+ L Sbjct: 123 ILLIAKDETGYKNLLKLSSLTFTKNDRKICDHIDFEDLIEYQEGLIALCCYTDGIVGKCL 182 Query: 144 LRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEE----SYLHAAVELAEARGLPVVAT 199 L N +E DR++ E++R P+E+ SY+ A ELA +P+VAT Sbjct: 183 LARNEEQAMLFARKLQEILGDRFYFEIMRHDLPEEQFIEDSYIRIAAELA----IPLVAT 238 Query: 200 NDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALAN 259 N V F + S DAH++ + I G T + P R + S Y RS EM ELF+D+P A+ N Sbjct: 239 NKVLFSEKSMHDAHDVLLCISAGVTKEYPDR-KTVSENCYFRSPHEMIELFSDLPSAIQN 297 Query: 260 TVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKEGLEERLAFLFPDE----EERL 315 TV + +RC LP F T D+S D + K AKEGL RLA F E E + Sbjct: 298 TVNLRERCYFAAHANPPMLPNFATKDISETDLIRKDAKEGLLARLATKFKSENISLENQE 357 Query: 316 KRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALK 375 + + EY RL EL +I M F GYFLIV +FI+WSK G+ VGPGRGSGAGS+VA++L Sbjct: 358 ELKTEYFARLNYELDIICNMNFAGYFLIVSDFIKWSKKEGILVGPGRGSGAGSVVAWSLL 417 Query: 376 ITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGT 435 ITDLDP++F LLFERFLNPER+SMPDFD+DFC E+R++VI +V YG + V QIITFG Sbjct: 418 ITDLDPIKFGLLFERFLNPERISMPDFDIDFCQERREEVINYVRSKYGDNRVGQIITFGK 477 Query: 436 MAAKAVIRDVGRVLGHPYGFVDRISKLIP---PDPGMTLAKAFEAEPQLPEIYEAD---- 488 M AKAVI+DV RVL PY F D +++L+P +P ++L +A P+L + + Sbjct: 478 MQAKAVIKDVARVLSLPYKFADYLTELVPFSAVNP-VSLEQAIREVPELANAAKGNGLYN 536 Query: 489 -----EEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDK 543 E +K ++D + LEG+ R++ HA G+VIA T + D P+Y D V + Sbjct: 537 LEGEAELIKLVLDTSLILEGLHRHSSTHAAGIVIAGTDLVDIVPVYKDANSDMLVVGYSM 596 Query: 544 SDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRS 603 E AGL+KFDFLGL+TLT+I K+ K +D + DD K++ ML + Sbjct: 597 KYSEIAGLIKFDFLGLQTLTVITDC-----KKLLKEQGIEVDFNNMTFDDNKTYQMLCKG 651 Query: 604 ETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISY 663 + VFQ ES GMKD ++RL+PD D+IAL AL+RPGP+++ + +I KH ++ Sbjct: 652 KGVGVFQFESIGMKDALRRLKPDSIHDLIALGALYRPGPMEN--IPTYIACKHKLQQ--- 706 Query: 664 PDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQ 723 PD + HE LKP+LE TYG+++YQEQV +IAQVL+GYTLG AD+LRRAMGKK +EM +Q Sbjct: 707 PD--YLHELLKPILEETYGVVIYQEQVQRIAQVLAGYTLGAADLLRRAMGKKIKKEMEEQ 764 Query: 724 RSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFM 783 +F +GA N I+ A IF V KFAGYGFNK+H+AAY ++SYQT +LKA+YPAEF+ Sbjct: 765 EEIFVKGAIANNISESQAKSIFATVAKFAGYGFNKAHAAAYGVISYQTAYLKANYPAEFL 824 Query: 784 AAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDD--------------- 828 A + +++N +K+ + E G+KI+ P+IN +F V Sbjct: 825 VACLNLELNNHDKINLFLQEAKDNGIKIIAPNINISEGYFSVKSSDTVIPRAATCHPQGS 884 Query: 829 -----------------------------GEIVYGIG-------------AIKGVGEGPI 846 G + GIG AIKGV Sbjct: 885 LCHPRESGDPEKLETALNHKSMKMDSRFRGNDIEGIGYDKEENAIIFALGAIKGVTPNFG 944 Query: 847 EAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDAL 906 + + + R G F+ + D R K +N ++LE LI SG FD L +R L +S+ L Sbjct: 945 KLVTDERKARGMFKSITDFIERLPPKSINSKLLENLIKSGCFDELHDNRLQLFSSISKLL 1004 Query: 907 KAADQHAKAEAIGQADMFGVLAEEPEQIEQS-YASCQPWPEQVVLDGERETLGLYLTGHP 965 + + + + Q + V P + S YA + + E E +GL+++ HP Sbjct: 1005 SYSTSYHEEQGSNQFSLIKVSTLSPTILVSSDYAD-----KNTLAFYEFEAMGLFISNHP 1059 Query: 966 INQYLKEIERYVGGVRLKDMHPT--ERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRS 1023 + QY +EI + + D+ E + AG++ ++ RG R L D Sbjct: 1060 LMQY-QEIFSRLNILNTADLQNNLPEGTNRVNLAGVIQKKDSRMSARG-RFVTLVLSDPE 1117 Query: 1024 GRLEVMLFT-DALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEA 1076 E+ +F+ + L Y LL+ +++V+ + D+ GG+K+TA+ + I++A Sbjct: 1118 NIFELSIFSEEVLKDYVHLLDVKSLVVVNCDIIKDE--GGIKLTAKSFLSIEDA 1169 >UniRef50_B5JFB3 DNA polymerase III, alpha subunit subfamily, putative n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JFB3_9BACT Length = 1259 Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust. Identities = 430/1242 (34%), Positives = 668/1242 (53%), Gaps = 119/1242 (9%) Query: 1 MSEPR---FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAG 57 MS P FVHL H+ YS++DG AK ++ LGMPALA+TD NL G + FY + Sbjct: 1 MSNPAEGPFVHLHNHTHYSLLDGCAKPLRAAQRCLELGMPALAMTDHGNLFGAIDFYRSC 60 Query: 58 HGAGIKPIVGADF---------------NVQCDLLGD---------------ELTHLTVL 87 GIKP++G + + D +GD ++ H V+ Sbjct: 61 KKVGIKPLIGCELYYVNDHKQSERPRRERKRTDDIGDIPEHYVPPKEDFPKYQIHHKGVI 120 Query: 88 AANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGN 147 A N GYQNL L+S A+ G P D + L + ++GLI LSG G + L+ G+ Sbjct: 121 AKNFEGYQNLCKLVSDAHINGV-YYKPRADIETLAKYSKGLIGLSGCINGVAAQYLIYGD 179 Query: 148 SALVDECVAFYEEHF-PDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFID 206 + A + + F + YF+E+ G P + + ++LA+ L V+ ND ++ Sbjct: 180 EENARKATATFVDIFGKENYFIEIQDHGMPVQRRIIPGLLKLAKEFDLKVICANDSHYVY 239 Query: 207 SSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKR 266 D + H+ + I G ++D R + S + Y++S +EM E+F ++PE+L NTV +A+ Sbjct: 240 KEDANPHDALLCIQTGKIIEDENRMKYPSQEFYLKSRQEMYEIFKEVPESLDNTVHVAEM 299 Query: 267 CNVTVRLGEYFLPQFPT----GDMSTED-------------------------------- 290 ++ + E P F G S +D Sbjct: 300 VDLEIPFDEDHYPVFECPPELGYKSDDDAFDRILDIYELEKTKVNKQNGDDTVCKLTAEE 359 Query: 291 ---------YLVKRAKEGLEERLAFLFPDEEERLKRRPEYDE-------RLETELQVINQ 334 L+ K+GL+ER + D + + E ++ +++ +L +I Sbjct: 360 RANHKKNGFVLLDLCKKGLKERYGVDYDDRASYVPKEGEREDFAEFVCDQMDFQLAIITG 419 Query: 335 MGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNP 394 GF YFLIV +FI +++ G+PVGPGRGSGAG ++AY LKITD+DPL F LLFER LN Sbjct: 420 TGFVDYFLIVWDFINFARSQGIPVGPGRGSGAGCIIAYVLKITDIDPLRFGLLFERMLNL 479 Query: 395 ERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYG 454 ERVS PDFD+DFCM +RD V+ +V + YG D+V+ IITFGT AK ++RD+ RV + Sbjct: 480 ERVSPPDFDIDFCMRRRDVVVNYVREKYGHDSVANIITFGTFGAKMIVRDLARVNNLQFA 539 Query: 455 FVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGG 514 D+I+K+IP + ++L + E L + K +++ + +EG+ RN GKHA G Sbjct: 540 EADKIAKMIPDELNISLDDSVEKSSDLRNEIAVNPVAKKIVEHGKVIEGMVRNTGKHACG 599 Query: 515 VVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINK 574 ++I I + P+ E TQ+ K E GL+K DFLGL+TLT+I+ A + I Sbjct: 600 IIIGDQPIHNLVPVTLQE--GDLTTQYPKGPSEDLGLLKMDFLGLKTLTVISDAQDNI-- 655 Query: 575 RRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIAL 634 +A P DI + L+D K++D+L T VFQLES GM++L K++ FE++IAL Sbjct: 656 -QATRNLPDFDIEKVTLEDPKTYDLLNAGNTVGVFQLESGGMQNLCKQIGLSVFEEIIAL 714 Query: 635 VALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIA 694 +AL+RPGP+Q + FI+ K ++I P H L+ ++ TYG+++YQEQVM+ A Sbjct: 715 IALYRPGPMQ--FIPQFIEGKRDPKKIQIP-----HPLLEELVSETYGVLVYQEQVMESA 767 Query: 695 QVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAE-KNGINAELAMKIFDLVEKFAG 753 ++++GYTLGGADMLRRAMGKK M Q+ +F +GA+ +GI + A+ IF ++EKFA Sbjct: 768 RIIAGYTLGGADMLRRAMGKKIASVMEAQKQIFVDGAKATHGIKEKEALNIFAILEKFAQ 827 Query: 754 YGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILP 813 YGFNKSHSAAYA++SY+T +LKA+YP EFMAA+++A++ N +KV +DE MG+++L Sbjct: 828 YGFNKSHSAAYAMLSYRTAYLKANYPVEFMAALLSAELGNADKVSHFIDEANSMGIRVLS 887 Query: 814 PDINSGLYHFHVNDD----------GEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELF 863 PDIN F D G IV+G+GA+KGVG+ + II R+ G + + Sbjct: 888 PDINKSKEMFTPVIDSEEDIADGKLGSIVFGMGAVKGVGDSAAKTIIAERDANGPYEGMD 947 Query: 864 DLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADM 923 +L R DTK +N+RVLE LI +GAFD G R +L + L A+ A + + + GQ Sbjct: 948 ELLERVDTKSVNKRVLENLIKTGAFDFTGEPRGSLFHRLEGAMNQAAEAQRDKERGQESF 1007 Query: 924 FGVLAEEPEQIEQ-SYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRL 982 F ++ EEP++ + + + + + +L E+E LG Y++GHP+++Y K I + L Sbjct: 1008 FDMIVEEPKEKDAPQWDLSKQFTKTEMLRYEKELLGFYVSGHPLDEY-KGIAEALTNFDL 1066 Query: 983 KDMHPTERGKVITAAGLVVAARVMVTKRGNR-IGICTLDDRSGRLEVMLFTDALDKYQQL 1041 + A G+ ++++ NR +L R L+V + DA ++Y Q Sbjct: 1067 SKVDQLGDKVEFQACGVAGGVVKKLSRKDNRPWAFFSLGTRKTSLQVNCYADAFEEYGQN 1126 Query: 1042 LEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRL 1101 LE D ++++ G V D G +++ E+ ++ + + L + D L + Sbjct: 1127 LENDALVLIKGTVIRRD--GEVRLNVLEIHPLEAFMPGQIKHITWVLDPDKDTDSFLYKY 1184 Query: 1102 RQSLEPHRSGTIPVHLYYQRAD---ARARLRFGATWRVSPSD 1140 R+ L+ R GT + ++ +D A A WRV+ ++ Sbjct: 1185 REVLDRTR-GTTTSDIAFRISDTCIASANTASSLRWRVNTNE 1225 >UniRef50_A5FKC9 DNA polymerase III, alpha subunit n=26 Tax=cellular organisms RepID=A5FKC9_FLAJ1 Length = 1510 Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/1183 (35%), Positives = 648/1183 (54%), Gaps = 103/1183 (8%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGA--GHGAG- 61 +F HL H+ +S++ +V A GMPA+A+TD N+ G F A H Sbjct: 260 KFAHLHNHTQFSVLQSTIGIGNIVAATAKNGMPAVAMTDTGNMMGAFHFVSAVMNHNKAA 319 Query: 62 ------------------IKPIVGADFNVQCDLL----GDELTHLTVLAANNTGYQNLTL 99 IKPIVG +FN+ + L D + +LA N GY NL Sbjct: 320 SGKNKALVEAGEEPTETEIKPIVGCEFNICENHLDKSKKDNGYQVVLLAKNKAGYHNLAK 379 Query: 100 LISKAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYE 159 + S AY G+ P ID++ + + +++LSG G++ +L +E + +++ Sbjct: 380 MASIAYTEGFYYV-PRIDKNIVEKYKGDIMVLSGNLYGEIPSKILNIGENQAEEALIWWK 438 Query: 160 EHFPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAI 219 E F + ++LE++R + DE +E ++ + ++ATN+ +++ D +AH+I + + Sbjct: 439 EQFGEDFYLEVMRHNQEDENRVNKTLIEFSQKHNVKLIATNNTYYLNKEDANAHDILLCV 498 Query: 220 HDGFTLDDP-KRPRNYS---PQQ--YMRSEEEMCELFADIPEALANTVEIAKRCNVTVRL 273 DG P R R Y P Q Y +SE EM +LFAD+PEA+ N E+ + Sbjct: 499 KDGEKQATPIGRGRGYRYGLPNQEYYFKSEAEMKKLFADLPEAIINIQEVIDKVEGYSLY 558 Query: 274 GEYFLPQFPTGDMSTEDYLVKRAKE--GLEERLAFLFPDEEERLKRR-----PEYDERLE 326 + LP+F D +++V +E G+ +L E KRR ERL+ Sbjct: 559 RDVLLPKFEIPD----EFMVPEDEEDGGVRGENKYLRHLTMEGAKRRYGEITESIQERLD 614 Query: 327 TELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDL 386 EL I+ G+PGYFLIV +FI ++ V VGPGRGS AGS VAY L IT++DP+++DL Sbjct: 615 FELMTISNSGYPGYFLIVQDFIAEARKMDVSVGPGRGSAAGSAVAYCLGITNIDPIKYDL 674 Query: 387 LFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVG 446 LFERFLNP+RVSMPD D+DF E R +V+++V + YG+ V+QIIT+G MA K+ IRD Sbjct: 675 LFERFLNPDRVSMPDIDIDFDDEGRGRVMDYVINKYGQKQVAQIITYGKMATKSAIRDTA 734 Query: 447 RVLGHPYGFVDRISKLIPPDPGMTLAK------AFEAEPQLPEIYEADE--EVKALIDMA 498 RVL P DRI+KLIP GM +K E+E ++ + +DE VK LI +A Sbjct: 735 RVLDLPLFEADRIAKLIP---GMMPSKWNLARFISESEEEVKKALRSDEFDNVKELIAIA 791 Query: 499 RK-------------LEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSD 545 + LEG RN G HA GV+I P+ IT++ P+ ++ VTQFD S Sbjct: 792 NEDDLAGETIQQAKILEGSMRNTGIHACGVIITPSDITNYVPVTTAKDSDLYVTQFDNSV 851 Query: 546 VEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSET 605 E AGL+K DFLGL+TLT+I ++++ R + LD P+DD++++ + QR ET Sbjct: 852 AESAGLLKMDFLGLKTLTLIKDTVKLVKYRTGID----LDPDNFPIDDEETYALFQRGET 907 Query: 606 TAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPD 665 +FQ ES GM+ +K L+P F D+IA+ AL+RPGPL+ + +F+ RK+G EEI Y Sbjct: 908 VGIFQYESPGMQKYMKDLKPTVFGDLIAMNALYRPGPLE--YIPSFVRRKNGDEEIKY-- 963 Query: 666 VQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRS 725 ++ L TYGI +YQEQVM ++Q L+G+T G AD+LR+AMGKK+ + + K + Sbjct: 964 ---DLDACAEYLSETYGITVYQEQVMLLSQSLAGFTKGEADVLRKAMGKKQKDVLDKMKP 1020 Query: 726 VFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAA 785 F E A + G +A++ KI+ E FA Y FNKSHS YA ++YQT +LKAHYPAE+MAA Sbjct: 1021 KFVEQAAQKGHDAKILEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAA 1080 Query: 786 VMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGP 845 V++ +M++ ++V ++EC RMGL++L PD+N Y F VNDD + +G+GAIKGVG G Sbjct: 1081 VLSNNMNDIKQVSFFMEECKRMGLQVLGPDVNESYYKFTVNDDYAVRFGMGAIKGVGSGA 1140 Query: 846 IEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRL-GPHRAALMNSLGD 904 +E I+E R K G ++ +FDL R D + N++ +E L ++G FD G RA + GD Sbjct: 1141 VETIVENR-KDGRYKSIFDLAKRIDLRAANKKAIENLALAGGFDSFEGTTRAQYFHDDGD 1199 Query: 905 -------ALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETL 957 A++ + + E Q +FG A E + E C+ W L E+E + Sbjct: 1200 GITFYEKAMRYGSKFQENENSSQVSLFGE-ASEVQIAEPVVPPCEDWSTMEKLAKEKEVV 1258 Query: 958 GLYLTGHPINQYLKEIERYVGGVRLKDMHPTER--GKVITAAGLVVAARVMVTKRGNRIG 1015 G+Y++GHP++ + E+ +Y RL+ + GK + AG++ + V K G Sbjct: 1259 GIYISGHPLDDFRFEM-KYFCNARLEALKSMNEYVGKNLNFAGIINNVQHRVAKNGKGWA 1317 Query: 1016 ICTLDDRSGRLEVMLFTDALDKYQQLLEKD-----RILIVSGQVSFDDFSGGLKMTAR-- 1068 L+ E +F + K++ L ++ +ILI G V+ D G K R Sbjct: 1318 AFNLEGYDESYEFKIFGEEYLKFRHFLIQNNFAFLKILIKDGWVNHD---TGKKTDPRMQ 1374 Query: 1069 --EVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHR 1109 E+ + + E +A+ L + L + + + +++L ++ Sbjct: 1375 FVEIRQLQDILEAFAKKLIVLLNIKDLHPEFIHKLSHLFNENK 1417 >UniRef50_C7N8B2 DNA-directed DNA polymerase III PolC n=2 Tax=Coriobacteriaceae RepID=C7N8B2_SLAHD Length = 1166 Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/1155 (36%), Positives = 646/1155 (55%), Gaps = 59/1155 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGH------G 59 FVHL H++YSM+DG K +V++AA LGMPA+AITD +CG+ + A G Sbjct: 3 FVHLHNHTEYSMLDGATKIKAMVRRAADLGMPAVAITDHGVMCGVPELCDAVEAVKKETG 62 Query: 60 AGIKPIVGADFNVQCDL-LGDE----LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGP 114 +KPI G + D +G L HL +LA NN GY NL ++S+++ + P Sbjct: 63 VYVKPIYGCEVYFTEDREIGTRKKSPLYHLILLAKNNVGYHNLLHIVSESHMDNF-FYKP 121 Query: 115 IIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRT 173 D L + +EG+I + G V R L N A + + F P +++EL Sbjct: 122 RTTIDVLEKYSEGIIGTTACMSGIVQRRLDDRNYADALAWTKRFADIFAPGDFYVELQDQ 181 Query: 174 GRPDEESYLHAAV-----ELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228 G + ++A+ GL +ATND ++ D A +I + I G DD Sbjct: 182 GLTSRGGLTQKEINTQLTQIAQELGLKTIATNDFHYLTREDAAAQDIMLCIGTGSLRDDE 241 Query: 229 KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMST 288 R R + + YM++EEEM E D PEA NT+E+A++C V + + LP+FP T Sbjct: 242 NRMRFSNDEFYMKTEEEMREALKDFPEACDNTIEVAEKCFVELER-DSVLPRFPLPPGYT 300 Query: 289 EDYLVKR-AKEGLEERLAFLFPDEEERLKRRPEYD----ERLETELQVINQMGFPGYFLI 343 E+ L + ++GLE R PD E +D ER E E VI Q GFP YFLI Sbjct: 301 EEQLFREECEKGLERRYG---PDWREIKISDGMHDVSVLERYEYEASVIVQQGFPAYFLI 357 Query: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 V E+I+W+K++G+ VGPGRGS AG++ YA+ ITDL+PL LLFERFL+PERV MPD D Sbjct: 358 VQEYIRWAKEHGIGVGPGRGSAAGAICTYAMGITDLEPLSNGLLFERFLSPERVEMPDID 417 Query: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 VDF E+R +VI+HV + YG D ++ +ITFG + AK +RD RVLGHPY DR+ K+I Sbjct: 418 VDFEDERRQEVIDHVREFYGADHIAGVITFGKLQAKNAVRDAARVLGHPYNTGDRLCKVI 477 Query: 464 PPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKIT 523 + G+ L A E P L +IY+ + E + ++D A +EG R G HA +I + Sbjct: 478 GDELGIKLKDAIENNPDLAKIYKEEPESREILDSAMSIEGNIRGEGVHACATIICRDPLV 537 Query: 524 DFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPP 583 D P+ D +G +TQ+D GL+K DFLGLRTL +++ A + R P Sbjct: 538 DHVPVKRDTKGGGMITQYDGHYTPELGLLKMDFLGLRTLGVLSRACRNVKDRFGITIVPD 597 Query: 584 LDIAAIPLDDKKSFDMLQRSET----TAVFQLESRGMKDLIKRLQPDCFEDMIALVALFR 639 IP+DD+ ++ ++ R ET +FQ+ES L R++P F D++A +AL R Sbjct: 598 ----EIPIDDEGAYKLM-RLETPYSMDGLFQVESALYVSLFARMKPRTFSDIVASIALNR 652 Query: 640 PGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSG 699 PGPL++G VD ++DR+ GR+ +SY D + LKP+LE TYG I+YQEQ+MQI+ +SG Sbjct: 653 PGPLENGFVDLYVDRRMGRKPVSYYD-----DRLKPLLEETYGTIVYQEQIMQISMAMSG 707 Query: 700 YTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKS 759 ++ G AD LR+AMGKK+ E M + + + GA +NG + E+A +I+ E+FA Y FNKS Sbjct: 708 FSAGKADKLRKAMGKKRIEVMMQLKDDWCNGAVENGFSLEIAERIWHDAEEFAKYAFNKS 767 Query: 760 HSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSG 819 HSAAYA++ +T ++KAHYP E+MAAV+++ M + +K++ + C R G+ +LPPDINS Sbjct: 768 HSAAYAVLVCRTAYMKAHYPYEYMAAVLSSYMGSADKLIKYISSCTRNGIPVLPPDINSS 827 Query: 820 LYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVL 879 F ++G I +G+ ++GVG E+II R++GG F L D R D K NR+ L Sbjct: 828 NLEFTPLEEG-IRFGLAGVRGVGAAVAESIIAERDEGGPFTSLHDFVNRVDGKCYNRKTL 886 Query: 880 EKLIMSGAFDRLGPHRAALMNSLGDA--LKAADQHAKAEAIGQADMFGVLAE-EPEQIEQ 936 E L+ +GAFD G R LM + + L+ + + GQ MF + + E E+ Sbjct: 887 EALVKAGAFDSTGYTRKQLMYFIDETSLLEDVAKRQRDRENGQVSMFDLFGDMEDSGFEE 946 Query: 937 SYASCQ--PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVI 994 + W ++ +L E+ L +Y++ HP++QY + + R + +L D+ +G + Sbjct: 947 DIPAPDGVEWDKRTLLAFEKSILKIYVSDHPLSQYERSL-RSISKFQLGDL-ADHKGDIK 1004 Query: 995 TA--AGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSG 1052 GL+ ++ +TK+G ++ ++D +G ++ + F D+++ +E+D I+ V G Sbjct: 1005 NGVFCGLISTVQIKMTKKGKKMATFVMEDTTGFVDCVCFK--YDEFKDAIEEDAIVKVKG 1062 Query: 1053 QVSFDDFSGGLKMTAREV--MDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRS 1110 + F+ G ++ A EV +D+D ++ L I L ++ +L L + Sbjct: 1063 K--FEHSERGDQLMAFEVERLDVDSMKQG-PSSLQIMLQSSDLNSMTSAQLNNVLANY-P 1118 Query: 1111 GTIPVHLYYQRADAR 1125 G PV L Q++D R Sbjct: 1119 GRDPVVLLVQQSDGR 1133 >UniRef50_A6DMI0 DNA polymerase III, alpha subunit n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DMI0_9BACT Length = 1223 Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/1101 (37%), Positives = 632/1101 (57%), Gaps = 45/1101 (4%) Query: 17 MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA-----DFN 71 M+ L+K+ G A A+TDF N+CG + F A IKPI+G + Sbjct: 1 MLQSACTMPALIKRLEEGGFEAAALTDFANMCGSIAFTNGLKKANIKPILGCYTYLNNSR 60 Query: 72 VQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEGLILL 131 Q L +LA NN GYQNL + ++++ + P IDR +L + +EG+I + Sbjct: 61 TQNPSNMSSFNGLILLAKNNVGYQNLCKINAQSHLESFHIK-PRIDRSFLRQYSEGIIAI 119 Query: 132 SGGRMGDVGRSLLRGNSALVDECVA--FYEEHF-PDRYFLELIRTGRPDEESYLHAAVEL 188 + D+ L S +D A FY + F + ++LE+ + R ++ ++L Sbjct: 120 APFHDSDIASDL----SKNIDPTNALNFYVDIFGKENFYLEIQKHKREGDDEKYPLVLQL 175 Query: 189 AEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCE 248 A+ + +VA+ V + ++ H+I + + T+ DP++ R Y+ EEM Sbjct: 176 AKDNEIGLVASQTVYYPEAKMAIPHDIVCCVGEK-TVHDPQKLRFPEKNYYLHLPEEMEG 234 Query: 249 LFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTED-YLVKRAKEGLEERLAFL 307 LF+D+PEAL NT +IA +C+V E++ P +P D T+ +L++ GL+ER Sbjct: 235 LFSDVPEALENTRKIANQCDVAFDTSEHY-PVYPMSDDRTQQQFLLEICVGGLKERYGLD 293 Query: 308 FPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAG 367 + +++ R E ER + EL VI++ G+ YFL+V +FI WSK N +PVGPGRGSGAG Sbjct: 294 HKNPKDQ--REKEIVERTDFELGVIHKSGYDSYFLVVWDFINWSKTNDIPVGPGRGSGAG 351 Query: 368 SLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAV 427 S+VAY IT++DP++++LLFERFLNPER+S PDFD+DFC +R +VI++V YG + V Sbjct: 352 SIVAYLTGITNIDPIKYNLLFERFLNPERISPPDFDIDFCERRRPEVIDYVRKKYGSEKV 411 Query: 428 SQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKA-FEAE---PQLPE 483 +QI T+GTM AKAVI+DV R LG+ + D+I+KLIP D +TL KA F+ + +L Sbjct: 412 AQIGTYGTMKAKAVIKDVTRALGYEHTRADQITKLIPEDLKITLHKALFDPKIKSEELIA 471 Query: 484 IYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDK 543 + +++E VK +ID A LEG+ RN G HA GV+I ++T+ PL G+ VTQF Sbjct: 472 LNDSEEWVKQIIDNAMPLEGLNRNMGIHACGVIIGDQELTNLIPLISGANGE-VVTQFSA 530 Query: 544 SDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRS 603 E GL+K DFLGLRTLT+I L +I +N + +DI AIP+DD++++ + Q Sbjct: 531 GPCEDLGLLKMDFLGLRTLTLIKDTLGLIK----ENHDIEIDIEAIPIDDRRTYKLFQEG 586 Query: 604 ETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISY 663 +TTAVFQ ES GM+ +K LQP F D+IA+ AL+RPGP+ + +FI+RKHGREEI+Y Sbjct: 587 KTTAVFQYESAGMQKYMKELQPTVFPDLIAMNALYRPGPI--AYIPSFIERKHGREEITY 644 Query: 664 PDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQ 723 E + L+ TYGI +YQEQVM ++Q L +T G AD LR+AMGKKK + +A+ Sbjct: 645 -----DCEGMDEYLQETYGITVYQEQVMLLSQKLGNFTKGEADTLRKAMGKKKMDLLAQL 699 Query: 724 RSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFM 783 + F + E NG + + + ++ E FA Y FNKSHS YA V+YQT +LKAHYPAEFM Sbjct: 700 KPKFLDQGEGNGHDRKKLEETWEKWEAFASYAFNKSHSTCYAWVAYQTAYLKAHYPAEFM 759 Query: 784 AAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGE 843 AAVMT+++ N +KV ++EC +GLK+LPP+IN F V ++G I + +GAIKGVG Sbjct: 760 AAVMTSELGNADKVTFFLEECRNLGLKVLPPNINKSKVTFSV-ENGAIRFALGAIKGVGT 818 Query: 844 GPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLG 903 E I+ R +G Y +LC R ++R+VLE +I SG D G R+AL + Sbjct: 819 SASETIVRIRKEGEY-ESFMNLCERVGHTNVSRKVLEGIIASGGMDEFGNKRSALTQFID 877 Query: 904 DALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTG 963 AL+ + A A+GQ +F + EE I S W + LD E+ LG Y TG Sbjct: 878 RALEHSSSKANDLAMGQMSLFAEV-EEVNTISPD-DSMPEWDLRYKLDMEKTLLGFYATG 935 Query: 964 HPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAA-RVMVTKRGNRIGICTLDDR 1022 HP+ ++ + I+++ + + + + G++++ + TK+G +D Sbjct: 936 HPVGEHKQLIKKFSSN-SITGLKKQSEDRAVARLGVMISNLNLRKTKKGKTFASFNAEDL 994 Query: 1023 SGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYAR 1082 S +E + + D+ + L+ + +++ + S + + ++ R + I E+ + Sbjct: 995 SDGIECICWD--YDQNSEALKDNSTILIEAEFSREPRT---QLIVRNAIPIHESVSAHTE 1049 Query: 1083 GLAISLTDRQIDDQLLNRLRQ 1103 I L + ++D + ++ ++ Sbjct: 1050 QTLIILDESKLDQEKESQFKE 1070 >UniRef50_C7NEL3 DNA polymerase III, alpha subunit n=3 Tax=Leptotrichia RepID=C7NEL3_LEPBD Length = 1185 Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust. Identities = 427/1209 (35%), Positives = 680/1209 (56%), Gaps = 80/1209 (6%) Query: 3 EPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGI 62 E +FVHL++H++YS+++G+ K V+KA G+ ALAITD T++ G ++F+ AGI Sbjct: 2 ENKFVHLKLHTEYSLLEGVGKIDEYVEKAKKTGVKALAITD-TSMFGAIEFFKKCKNAGI 60 Query: 63 KPIVGAD-FNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL 121 KPI+G + F + +G+ LT+LA N GY+NL+ L S +Y R + I D L Sbjct: 61 KPIIGLEVFLDGLEKVGE--FSLTLLAKNQNGYKNLSKLSSISYSR-FTRNRNKIKYDEL 117 Query: 122 IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181 + ++ L +LSGG +V + +L + V V + F D +F+E+ R ++ Sbjct: 118 KKYSDDLYILSGGINSEVVKGILDLENTQVRRVVEKLGKDFGDNFFIEVPAVERLEKARK 177 Query: 182 LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRN--YSPQQY 239 + + + + + V TNDV + + D +I +I +G +D K + Y Sbjct: 178 MLFDI-VRKNKFDNFVITNDVYYPNRKDAVLQKIVESIKEGSKIDTEKSENSEILYDDLY 236 Query: 240 MRSEEEMCELF-----ADIPEALANTVE-IAKRCNVTVRLGEYFLPQFPT-GDMSTEDYL 292 ++SE E+ + F ++ E N VE I + CNV + P++ ++S +++L Sbjct: 237 LKSENEIEKSFENKEYSEFYETGINNVEKIMENCNVDFEFHHFKFPKYSLPQNISEKEFL 296 Query: 293 VKRAKEGL-----------EERLAF----------LFPDE------------EERLKRRP 319 EGL E+L + DE EE LK Sbjct: 297 RNLVFEGLFHKYLKKSVSDSEKLQLDKNFEIIQKEIAKDEIAGQKLKEVKIREELLKNNL 356 Query: 320 E-YDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITD 378 E ER E EL++I++MG+ GYF+IV +FI++S++NGV VGPGRGS AGS+V+YAL IT+ Sbjct: 357 ENVLERAEYELEIIDKMGYNGYFIIVWDFIKFSRENGVYVGPGRGSAAGSIVSYALNITE 416 Query: 379 LDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAA 438 +DPLE++L+FERFLNPER+SMPD D+DF E+R+ VI +V + YG + V+ IITFGT+ A Sbjct: 417 IDPLEYNLIFERFLNPERISMPDIDIDFDQEQREIVINYVVNKYGAEYVAHIITFGTLKA 476 Query: 439 KAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMA 498 + IRDVGRVL VD+I+K+IP + L A P+ ++Y D E+K +ID + Sbjct: 477 RLAIRDVGRVLNVSLVKVDKIAKMIPFNT--ELKDALNNIPEFRKMYGTDREIKKVIDYS 534 Query: 499 RKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLG 558 KLEG R+A HA GVVI+ ++D P Y D + K TQ+ ++E G++K DFLG Sbjct: 535 LKLEGKVRHASVHAAGVVISKDVLSDEIPTYSDGKTKIVSTQYQMKELEELGILKMDFLG 594 Query: 559 LRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKD 618 L+ LTI+ +E I KRR + + + IPL+D+K++++L +++T VFQ ES G++ Sbjct: 595 LKNLTILRKTVENIEKRR----KTKIVLNDIPLNDEKTYELLTKADTMGVFQCESAGIRS 650 Query: 619 LIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLE 678 L+K+++ + FED+IAL+AL+RPGPL+SGMVD+FI+ K+ R EI Y D +SLK +LE Sbjct: 651 LMKKMKIEKFEDIIALLALYRPGPLRSGMVDDFINVKNNRTEIKYID-----DSLKYILE 705 Query: 679 PTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINA 738 TYGIILYQEQVM+I ++ Y+LG AD LRRA+GKK PE M K R F AEKNG+ + Sbjct: 706 ETYGIILYQEQVMKIVSEMANYSLGEADELRRAIGKKNPELMKKNREKFVTNAEKNGVFS 765 Query: 739 ELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVV 798 + A +I+DLVEKF GYGFNKSHSAAYAL+ Y T + KA+YP EF AA++T ++ N ++ V Sbjct: 766 KKANEIYDLVEKFGGYGFNKSHSAAYALIVYWTAYFKANYPLEFFAAIITTEVHNLDRFV 825 Query: 799 GLVDECWRMGLKILPPDINSGLYHFHVNDDGE---------IVYGIGAIKGVGEGPIEAI 849 V+E G+ I PD+N Y F + + E I +G+ A+KG+G I I Sbjct: 826 VFVNEAKEKGINIFLPDVNLSDYDFEIEESFENNNEIKKMGIRFGLFAVKGIGAALINEI 885 Query: 850 IEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAA 909 + R G F D R + ++ LE I+SGA D+L +R S+ L+ + Sbjct: 886 KKERENGD-FSSYEDFVYRMKQNGITKKQLESFILSGALDKLNGNRFEKYKSIDKILEYS 944 Query: 910 DQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQY 969 + ++E Q +F E+ + + +P++V+L+ E+E LG+Y++ HP+N+ Sbjct: 945 QKKYESEEDLQMILFS--GEKKFKGKFEMEKADEFPQKVLLENEKEYLGIYVSSHPLNEK 1002 Query: 970 LKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGI-CTLDDRSGRLEV 1028 K + + ++ ++ E KV G+V + T+ G + ++D +EV Sbjct: 1003 -KRLINIISHNKISEISQKELKKV-RIIGIVKNVKKFATRAGKEPMVKFEMEDFQKNIEV 1060 Query: 1029 MLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISL 1088 + F + + + +I+++ G V+ + + + + +I+ E L I L Sbjct: 1061 VCFPREYVTFGYKITEGQIMVLEGIVNSEQNKNTVILN--NICNIENLEENKNLKLYI-L 1117 Query: 1089 TDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRG 1148 D ++ ++ N+ + + G V L ++ + + ++ + V+ S + + + Sbjct: 1118 IDEEVKEK--NQKLKEIILKNKGDNQVFLAFKTNEKKEVVKLSKKYNVNLSLKFIRKVAK 1175 Query: 1149 LIGSEQVEL 1157 L G E+++L Sbjct: 1176 LFGIERIKL 1184 >UniRef50_Q9K838 DNA polymerase III subunit alpha n=1 Tax=Bacillus halodurans RepID=DPO3A_BACHD Length = 1116 Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/1169 (36%), Positives = 676/1169 (57%), Gaps = 85/1169 (7%) Query: 7 VHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIV 66 VH+ VHS+Y+++ + + LV+KA A ALA+TD + G V FY A +G+KPI+ Sbjct: 4 VHIHVHSEYTLLSSMCRIPALVEKAKAAQFSALALTDRHVMYGAVPFYKACKESGLKPII 63 Query: 67 GADFNVQCDLLGDELTHLTVLAANNTGYQNL----TLLISKAYQRGYGAAGPIIDRDWLI 122 G + V+ D + L + A +N GY++L T++ + + Y + + L+ Sbjct: 64 GMETTVR--FAEDRESDLLLYARSNKGYEHLLKLSTIIQCREEKEKY------VTWEELL 115 Query: 123 ELNEGLILL---SGG--RMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRTGRP 176 + L+ + SGG R +L RG + + F ++H + +LE+ T R Sbjct: 116 AYKDDLLYVIPYSGGFVRACLEDEALERG-----ERFIQFLKDHLGGESVYLEIQGTDRS 170 Query: 177 DEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSP 236 E A +LA +P+V + ++ ++ D DA ++ AI +G +++ + Sbjct: 171 KVEPINQLAAKLA----IPLVCSQHIQVLEREDLDAWKVIQAIREGVLVEELR------- 219 Query: 237 QQYMRSEEEMC--------ELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMS 287 + EE++C + F PEAL NT ++A RC+V + LG+ LP+F T + S Sbjct: 220 ---IEQEEDVCFFTLTEMEQTFRAYPEALQNTKKLADRCHVELTLGKPRLPKFQTPNEQS 276 Query: 288 TEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347 EDYL K ++G +ER EE K E +RL EL VI +MGF YFLIV +F Sbjct: 277 AEDYLRKLCEQGAKERYG------EEWTK---EKAQRLGEELAVIERMGFSDYFLIVWDF 327 Query: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 ++++++ + GPGRGS AGSLVAY L ITD+DPL +DLLFERFLNPER+S+PD D+DF Sbjct: 328 MRFAREASIVTGPGRGSVAGSLVAYVLFITDVDPLHYDLLFERFLNPERISLPDIDLDFP 387 Query: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467 +R++VI +V YG + V+QI+TFGT+AA+A +RDVG+ L P +++ISK I P Sbjct: 388 DHRREEVIVYVKKKYGANRVAQILTFGTLAARASVRDVGKALAIPPNVIEKISKEISGRP 447 Query: 468 GMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAP 527 GMTL KA+ +L ++ A +E + ++ +ARK+EG+ R+ HA GVVI+ +T+ Sbjct: 448 GMTLVKAYNENERLRQLVHASDEAQKVMKLARKVEGLPRHTSTHAAGVVISEQPLTEVIA 507 Query: 528 LYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIA 587 L +G+ P+TQ VE GL+K DFLGLR LT+ LEM+ KR + L++ Sbjct: 508 LQHG-QGEVPLTQGTMETVEDVGLIKMDFLGLRNLTL----LEMVVKRVRETYGHSLNVK 562 Query: 588 AIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGM 647 +PL+D K+F +L + ETT VFQLES GM+ +++ L+P+ F D++A+ AL+RPGP++ Sbjct: 563 QLPLNDAKTFALLAKGETTGVFQLESGGMRKVLRELKPNTFADIVAVNALYRPGPME--F 620 Query: 648 VDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADM 707 + ++I K G +EI+Y H L+P+L TYG+I+YQEQ+MQIA ++G++LG AD+ Sbjct: 621 IPDYIQGKEGTKEITY-----LHPDLEPILSSTYGVIVYQEQIMQIAAKMAGFSLGEADL 675 Query: 708 LRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALV 767 LRRA+ KKK E + +Q F GA + G E A KI++L+ +FA YGFNKSH+ AY+++ Sbjct: 676 LRRAISKKKGEALRQQEEAFVTGAVRQGYEQETAKKIYELIVRFANYGFNKSHAVAYSML 735 Query: 768 SYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVND 827 +YQ +LKAHYP+ F AA+ + + EK+ L+ E + G+++LPP ++ HF + Sbjct: 736 AYQLAYLKAHYPSSFYAALASTIWNQPEKLERLLQEMKQQGIRVLPPSLSKSDIHFSEEE 795 Query: 828 DGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGA 887 +G + + + ++ V I +I+AR + R LFDLC+R D + + RV+E LI +GA Sbjct: 796 EG-VRFPLLPLRYVSVRAIRELIKARREAP-VRSLFDLCSRVDGRIVTSRVMESLIKAGA 853 Query: 888 FDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQ 947 D LG RA L+ ++ +A + A+Q K +F + EEPE Y +P + Sbjct: 854 LDELG-ERATLLANIEEAFQFAEQ-VKEFQENTGGLFQLSVEEPE-----YIKVEPLTDL 906 Query: 948 VVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMV 1007 L E+E +G YL+GHP+ Y + + +Y RL + TER + + AG++ R + Sbjct: 907 EKLAYEKEAVGFYLSGHPLLAYTESLRQY---DRLTYLEGTER-RFVKLAGMIHRIRRIR 962 Query: 1008 TKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTA 1067 TKRG +G T+ D +G E ++F Y+ L++ + V G++ S L++ Sbjct: 963 TKRGEVMGFLTMSDETGEWEAVVFPAVWAMYEWGLKEGELYFVEGKMD-RGRSEELQLLV 1021 Query: 1068 REVMDIDEAREKYARGLAISLT-DRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARA 1126 +V+ + +K L + +T D + + + LN +R+ L+ H G PV +YY++ R Sbjct: 1022 DKVLPLKHMLKKEKEKLFLKITADVEKEVERLNDIRRLLQVHH-GPTPVVMYYEK--QRK 1078 Query: 1127 RLRFGATWRVSPSDRLLNDLRGLIGSEQV 1155 ++ + VS S LL++L L+G E V Sbjct: 1079 TIQLPEKYHVSLSFTLLHELEQLVGKEHV 1107 >UniRef50_Q9Z618 DNA polymerase III subunit alpha n=43 Tax=Actinobacteridae RepID=DPO3A_STRCO Length = 1179 Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust. Identities = 428/1196 (35%), Positives = 657/1196 (54%), Gaps = 68/1196 (5%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS+P F HL VH+ YS++DG A+ + +GM +A++D NL G F+ + A Sbjct: 1 MSKPPFTHLHVHTQYSLLDGAARLKDMFDACNEMGMSHIAMSDHGNLHGAYDFFHSAKKA 60 Query: 61 GIKPIVGADFNV-------------------QCDLLGDE-LTHLTVLAANNTGYQNLTLL 100 G+ PI+G + V + D+ G TH T+ A N+ G NL L Sbjct: 61 GVTPIIGIEAYVAPESRRNKRKIQWGQPHQKRDDVSGSGGYTHKTMWATNSKGLHNLFRL 120 Query: 101 ISKAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEE 160 S AY G+ P +D++ + + +EG++ +G G+V L G+ + A Y++ Sbjct: 121 SSDAYAEGWLQKWPRMDKETISQWSEGIVASTGCPSGEVQTRLRLGHFDEALKAAADYQD 180 Query: 161 HF-PDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAI 219 F DRYFLEL+ G E +E+ G+P + TND + + + AH+ + I Sbjct: 181 IFGKDRYFLELMDHGIEIEHRVRDGLLEIGRKLGIPPLVTNDSHYTYAHEATAHDALLCI 240 Query: 220 HDGFTLDDPKRPRNYSPQQYMRSEEEMCELFAD--IPEALANTVEIAKRCNVTVRLGEY- 276 G L DP R R Y++S +EM + + E ANT IA+ + T + Sbjct: 241 QTGKNLSDPDRFRFDGTGYYLKSTDEMYAIDSSDAWQEGCANTRLIAEMIDTTGMFEKRD 300 Query: 277 FLPQFPTGDMSTE-DYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQM 335 +P+F + TE + + + G+E R P++ ++ + E E+ VI QM Sbjct: 301 LMPKFDIPEGFTEITWFQEEVRRGMERRFPGGVPEDRQK---------QAEYEMDVIIQM 351 Query: 336 GFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPE 395 GFPGYFL+V +FI W+K+ G+ VGPGRGS AGS+VAYA+ ITDLDP+ L+FERFLNPE Sbjct: 352 GFPGYFLVVADFIMWAKNQGIAVGPGRGSAAGSIVAYAMGITDLDPIPHGLIFERFLNPE 411 Query: 396 RVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGF 455 RVSMPD D+DF +R +VI +V + YG D V+ I T+G + AK I+D RVLG+PY Sbjct: 412 RVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAM 471 Query: 456 VDRISKLIPPDPGMTLAKAFE----AEPQLP---------EIYEADEEVKALIDMARKLE 502 DR++K +P D L K + +P P +YE++ +VK +ID A+ +E Sbjct: 472 GDRLTKAMPAD---VLGKGIDLNGITDPTHPRYSEAGEIRSMYESEPDVKKVIDTAKGVE 528 Query: 503 GVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTL 562 G+ R G HA GV+++ I D AP++ +TQ+D E GL+K DFLGLR L Sbjct: 529 GLVRQMGVHAAGVIMSSEPIVDHAPIWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNL 588 Query: 563 TIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKR 622 TI++ A++M+ + + LD+ ++PLDD +F++LQR +T VFQ + M+ L++ Sbjct: 589 TIMDDAVKMVKSNKGID----LDLLSLPLDDPTTFELLQRGDTLGVFQFDGGPMRSLLRL 644 Query: 623 LQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYG 682 ++PD FED+ A+ AL+RPGP+ N+ RK+G +EI+ P + E L+ VL TYG Sbjct: 645 MKPDNFEDISAVSALYRPGPMGMDSHTNYALRKNGLQEIT-PIHKELEEPLQEVLAVTYG 703 Query: 683 IILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAM 742 +I+YQEQV + AQ+++GY+LG AD+LRR MGKKKP+E+AK +F GA KNG + E Sbjct: 704 LIVYQEQVQKAAQIIAGYSLGEADILRRVMGKKKPDELAKNFVLFQAGARKNGYSDEAIQ 763 Query: 743 KIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVD 802 ++D++ FAGY FNK+HSAAY LVSY T +LKA+YPAE+MAA++T+ D+ +K ++ Sbjct: 764 ALWDVLVPFAGYAFNKAHSAAYGLVSYWTGYLKANYPAEYMAALLTSVKDDKDKSAVYLN 823 Query: 803 ECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFREL 862 EC RMG+K+LPP++N + +F D I++G+ A++ VG +E+II+ R G + Sbjct: 824 ECRRMGIKVLPPNVNESMSNFAAQGDDVILFGLSAVRNVGTNVVESIIKCRKAKGKYASF 883 Query: 863 FDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQAD 922 D + + N+R E LI +GAFD +G R L + + EA GQ D Sbjct: 884 PDYLDKVEAVVCNKRTTESLIKAGAFDEMGHTRKGLTAQYEPMIDNVVAVKRKEAEGQFD 943 Query: 923 MFGVLAEEPEQIEQSYA-----SCQPWPEQVVLDGERETLGLYLTGHPINQYLKEI--ER 975 +FG + +E + E + W + +L ERE LGLY++ HP+ L+ + ++ Sbjct: 944 LFGGMGDE-QSDEPGFGLDVVFGEDEWDKTYLLAQEREMLGLYVSDHPLFG-LEHVLSDK 1001 Query: 976 YVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDAL 1035 G+ G V+T G++ + +TK+GN I T++D +G LE M F Sbjct: 1002 ADAGISQLTGGDFGDGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSLECMFFPATY 1061 Query: 1036 DKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDD 1095 L +D ++ V G++ D ++ A E+M D + + +++ +I Sbjct: 1062 QLVSTQLVEDAVVFVKGRL--DKREDVPRLVAMELMIPDLSNAGTNAPVVLTIPATRITP 1119 Query: 1096 QLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIG 1151 +++RL + L HR G V + Q LR RV P L DL+ L+G Sbjct: 1120 PMVSRLGEILTHHR-GDSEVRIKLQGPTKTTVLRLDRH-RVKPDPALFGDLKVLLG 1173 >UniRef50_P63978 DNA polymerase III subunit alpha n=117 Tax=root RepID=DPO3A_MYCBO Length = 1184 Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust. Identities = 431/1196 (36%), Positives = 654/1196 (54%), Gaps = 77/1196 (6%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL H++YSM+DG AK P++ + LGMPA+ +TD N+ G +FY + AGIKPI Sbjct: 10 FVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAGIKPI 69 Query: 66 VGAD--------FNVQCDLLGD------------ELTHLTVLAANNTGYQNLTLLISKAY 105 +G + F+ + L GD THLT++A N TG +NL L S A Sbjct: 70 IGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLSSHAS 129 Query: 106 QRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PD 164 G + +D + + E EG+I+ +G G+V L G E A + E PD Sbjct: 130 FEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWREIVGPD 189 Query: 165 RYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFT 224 YFLEL+ G E +E+ A +P +ATND ++ HE + + G T Sbjct: 190 NYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLCVQTGKT 249 Query: 225 LDDPKRPRNYSPQQYMRSEEEMCELFAD-IPEALANTVEIAKRCN--VTVRLGEYFLPQF 281 L DP R + Y++S EM +++ D +P A +T+ IA+R V +P F Sbjct: 250 LSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWTPRDRMPVF 309 Query: 282 PTGDMSTE-DYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGY 340 P D + +L GL R PD Y ER E+ VI GFP Y Sbjct: 310 PVPDGHDQASWLRHEVDAGLRRRFPAGPPDG---------YRERAAYEIDVICSKGFPSY 360 Query: 341 FLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMP 400 FLIV + I +++ G+ VGPGRGS AGSLVAYAL ITD+DP+ LLFERFLNPER SMP Sbjct: 361 FLIVADLISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMP 420 Query: 401 DFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRV-LGHP-YGFVDR 458 D D+DF +R +++ + AD +G D V+Q+ITFGT+ KA ++D R+ G P + DR Sbjct: 421 DIDIDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADR 480 Query: 459 ISKLIPP-------------DPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVT 505 I+K +PP DP + ++ ++ + E D +V+ + AR LEG+ Sbjct: 481 ITKALPPAIMAKDIPLSGITDPSH---ERYKEAAEVRGLIETDPDVRTIYQTARGLEGLI 537 Query: 506 RNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTII 565 RNAG HA V+++ +T+ PL+ + +T +D E GL+K DFLGLR LTII Sbjct: 538 RNAGVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTII 597 Query: 566 NWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQP 625 A++ + R + LD+ ++PLDDK ++++L R +T VFQL+ M+DL++R+QP Sbjct: 598 GDAIDNVRANRGID----LDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQP 653 Query: 626 DCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEIS--YPDVQWQHESLKPVLEPTYGI 683 FED++A++AL+RPGP+ +++ DRK+ R+ I +P+++ E L+ +L TYG+ Sbjct: 654 TGFEDVVAVIALYRPGPMGMNAHNDYADRKNNRQAIKPIHPELE---EPLREILAETYGL 710 Query: 684 ILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMK 743 I+YQEQ+M+IAQ ++ Y+L AD+LR+AMGKKK E + K+ F++G + NG + Sbjct: 711 IVYQEQIMRIAQKVASYSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKA 770 Query: 744 IFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDE 803 ++D + FA Y FNKSH+A Y +VSY T +LKA+YPAE+MA ++T+ D+ +K + + Sbjct: 771 LWDTILPFADYAFNKSHAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLAD 830 Query: 804 CWRMGLKILPPDIN-SGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFREL 862 C ++G+ +LPPD+N SGL V D I YG+GA++ VG + ++++ RN G F + Sbjct: 831 CRKLGITVLPPDVNESGLNFASVGQD--IRYGLGAVRNVGANVVGSLLQTRNDKGKFTDF 888 Query: 863 FDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQAD 922 D + D N++V E LI +GAFD LG R L DA+ + KAEA+GQ D Sbjct: 889 SDYLNKIDISACNKKVTESLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFD 948 Query: 923 MFGVLAEEPEQIEQSYASCQP---WPEQVVLDGERETLGLYLTGHPINQYLK----EIER 975 +FG + + + P W ++ L ERE LGLY++GHP+N +++ Sbjct: 949 LFGSNDDGTGTADPVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDT 1008 Query: 976 YVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDAL 1035 + + D+ + +V G++ + V K G L+D +G +EVM F Sbjct: 1009 AIPAILDGDVPNDAQVRV---GGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTY 1065 Query: 1036 DKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDD 1095 Y + D +++V+ +V+ D + + A ++ D + + R LA+SL RQ Sbjct: 1066 SSYGADIVDDAVVLVNAKVAVRDDR--IALIANDLTVPDFSNAEVERPLAVSLPTRQCTF 1123 Query: 1096 QLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIG 1151 ++ L+Q L H GT VHL D L + RV+PS L+ DL+ L+G Sbjct: 1124 DKVSALKQVLARH-PGTSQVHLRLISGDRITTLALDQSLRVTPSPALMGDLKELLG 1178 >UniRef50_UPI0001C42452 DNA polymerase III alpha subunit n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42452 Length = 1117 Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/1169 (35%), Positives = 652/1169 (55%), Gaps = 70/1169 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 +H V+S+YS++ + LV KA G ALA+TD N+ V FY A GIKP+ Sbjct: 3 LLHTNVYSEYSLLSSTNRIKELVSKAKETGFTALALTDKGNMFAAVPFYKACLETGIKPV 62 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 +G + ++ + + L +LA N TGY++L L IS Q + D +N Sbjct: 63 IGLEIPIKDN---EHSGSLRLLAKNTTGYKSL-LKISTLLQTEDNLRAGLAPDDLRSRIN 118 Query: 126 EGLILLSGGRMGDVGRSLLRGNS--ALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLH 183 + LI++ L++ A + CV + + ++++L G D ES+ Sbjct: 119 DCLIIIP---YDSPMHQLIKAGEVEAAKEWCVRWITRSKKEDWYIDL--AGNADRESHHW 173 Query: 184 AAV-ELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTL---DDPKRPRNYSPQQY 239 AV + A L + +N VRF +++A+ AI +G T+ D+ R++ Y Sbjct: 174 EAVSQFASRYNLKLCGSNPVRFTSKENYEAYAAVRAIREGKTIHLQDEGHAERSF----Y 229 Query: 240 MRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFP-TGDMSTEDYLVKRAKE 298 ++S+EE+ + F+ +P AL+ EI ++CN+T+ L +LP +P T ++ L K E Sbjct: 230 LKSKEELKQSFSPVPAALSGLGEIVEQCNITIDLDRRYLPAYPFTKSEPAKEVLKKACLE 289 Query: 299 GLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPV 358 G +R DE R RLE EL VI+QMGF YFLIV +F+Q ++ + Sbjct: 290 GANKRFNHTITDEVRR---------RLEKELAVIDQMGFNDYFLIVADFMQHARKRNMMT 340 Query: 359 GPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHV 418 GPGRGS AGSL AY L ITD++PL++DLLFERFLNPER+S+PD D+DF +RD+VI++V Sbjct: 341 GPGRGSAAGSLTAYVLYITDVNPLKYDLLFERFLNPERISLPDIDIDFPDHRRDEVIQYV 400 Query: 419 ADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAE 478 + YG D V+QI TFGT+AA+A IRD G+ L +++++KLIP PG+T+ KA E E Sbjct: 401 QEKYGPDHVAQIATFGTLAARAAIRDTGKALSCDSFLIEKVAKLIPSTPGITIKKAMEQE 460 Query: 479 PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538 L +I E+ L+ +A +EG+ R+ HA GVVI+P +T+ L ++G+ PV Sbjct: 461 RGLQQIRNDSEDANKLLSIAESIEGLMRHVSTHAAGVVISPVPLTELVAL---QKGQGPV 517 Query: 539 --TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKS 596 TQ VE GLVKFDFLGLR LT++ L +I + + +DI +IP DD K+ Sbjct: 518 RLTQATMGIVEDIGLVKFDFLGLRNLTLLERVLSIIEQESGRR----VDIHSIPWDDVKT 573 Query: 597 FDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKH 656 +++L +TT VFQLES+GM+ +++ L P FED++A+ AL+RPGP+ + +I+ KH Sbjct: 574 YELLANGDTTGVFQLESQGMRRVLRSLMPTEFEDIVAVNALYRPGPMD--YIQVYINGKH 631 Query: 657 GREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKK 716 + I+ D+ HE L P+L TYG+I+YQEQ+MQIA ++G++L AD+LRRA+ KK Sbjct: 632 KKAPIN--DI---HEELTPILGKTYGVIVYQEQIMQIAVKMAGFSLARADLLRRAISKKN 686 Query: 717 PEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKA 776 ++ K R F +GA++ G N ++A K+F L+E+FA YGFN+SH+ AY+++SYQ +LKA Sbjct: 687 KADLEKSRGDFLKGAKEKGYNEDIANKVFQLIERFANYGFNRSHAVAYSMISYQLAYLKA 746 Query: 777 HYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIV-YGI 835 H+P F A++++ + EK+ L+ E + + I+PP I+ F + D G V +G+ Sbjct: 747 HFPTAFYTALLSSVWNTPEKLTELLQETKKRKIDIMPPSISKSGLLFTLEDHGHTVRFGL 806 Query: 836 GAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHR 895 + VG + II+ + Y ++LFD C R + + +NRR E LI +GA D G R Sbjct: 807 LPVSHVGVQAAKHIIDTAREAPY-KDLFDYCVRVNQRIVNRRATENLIKAGAMDEWGEDR 865 Query: 896 AALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERE 955 A L+ +L A A++ + A +F + E P+ Y P Q L E+E Sbjct: 866 ATLLYNLDQAYSFAEKVLSFQD-EMAGLFTLDIETPQ-----YEHVDPLSLQEKLSFEQE 919 Query: 956 TLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERG---KVITAAGLVVAARVMVTKRGN 1012 LG+Y++GHPI Q + +Y V + DM ++G K + AG+V + + + TK+G+ Sbjct: 920 ALGVYVSGHPIEQVSDVLAKY-QRVLIADMIQDQKGQERKRLRIAGMVSSLKKITTKKGD 978 Query: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072 + D SG EV++F D +Y+ ++ + +L + G +FD + + + Sbjct: 979 PMAFLEAADESGHCEVVVFPDVWKEYETMIREGELLFMEG--AFDHTRDKPQFLLKRSVL 1036 Query: 1073 IDE--AREKYARGLAISLTDR-QIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLR 1129 I A + + L + L D+ Q+ D + L G V Y ++ R ++ Sbjct: 1037 IQSIVAASRKEKVLYLKLKDQSQLPDV------KKLLIGDEGATKVITYLEK--ERQTIQ 1088 Query: 1130 FGATWRVSPSDRLLNDLRGLIGSEQVELE 1158 + V PS+ +N L L+G EQV L+ Sbjct: 1089 MQPVYEVGPSEECMNHLMELLGREQVVLK 1117 >UniRef50_Q83I40 DNA polymerase III alpha subunit n=2 Tax=Tropheryma whipplei RepID=Q83I40_TROW8 Length = 1164 Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/1093 (37%), Positives = 620/1093 (56%), Gaps = 71/1093 (6%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL VH+DYSM+DG A+T L++KAA MPA+AITD N G F+ I PI Sbjct: 7 FVHLHVHTDYSMLDGAARTEDLMRKAAEDKMPAIAITDHGNTFGAFDFWKTAKTYDINPI 66 Query: 66 VGADFNVQCDL-------------------LGDELTHLTVLAANNTGYQNLTLLISKAYQ 106 +G + + G THLT+L+ NN G NL L S A Sbjct: 67 IGMEAYLTPGTNRKEKVRKFFASGGPDDVSAGGAYTHLTLLSQNNEGMHNLFKLSSLASI 126 Query: 107 RGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDR 165 GY P ID + L + + GLI +G G++ L G + + A + F P+ Sbjct: 127 EGY-YFKPRIDIELLNQYSNGLIATTGCPSGEIQTRLRLGQYSEARQAAAQMRDIFGPEN 185 Query: 166 YFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTL 225 Y+ E++ E++ + + LA GLP++ATND+ +++S D +H + + G T+ Sbjct: 186 YYCEVMDHNLEIEKAVMPDLLRLAGDLGLPLLATNDLHYVNSEDSASHAALLCVQSGSTI 245 Query: 226 DDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGD 285 +DP R + S + Y++S EM LF D+PEA NT+ +A+RC++ F+P+F + Sbjct: 246 NDPNRFKFDSDEFYLKSSSEMRILFEDLPEACDNTLLVAERCHINFDTQRSFMPRFSVPE 305 Query: 286 MSTED-YLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIV 344 TE+ + K G+ R +P+ R E+ E E++V+ + G+ GYFLIV Sbjct: 306 GETENSWFASEVKRGIASR----YPNGPSR-----RVIEQAEYEIRVVQEAGYAGYFLIV 356 Query: 345 MEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDV 404 +FI W+K NG+ VGPGRGSGA S+ AYA++ITDLDPLE L+FERFLNP R+SMPDFD+ Sbjct: 357 ADFINWAKLNGIRVGPGRGSGAASMAAYAMRITDLDPLEHGLIFERFLNPARISMPDFDI 416 Query: 405 DFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIP 464 DF +R +VI++V YG D V+QI+TF T+ AK ++D RVL +PY F +R++K +P Sbjct: 417 DFDERRRGEVIDYVTKKYGSDHVAQIVTFATIKAKQALKDSARVLSYPYSFGERLTKAMP 476 Query: 465 PDP-----------GMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAG 513 P T ++ EA ++ ++ E+D E++ + + A+ LE + R HA Sbjct: 477 PAVMGREIPLRAIFDTTHSRHREAS-EVRQMIESDYEMQQIFNTAKGLENLKRQWAVHAA 535 Query: 514 GVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMIN 573 GV+++ I D P+ E H VTQFD + E GLVK DFLGLR LTII+ AL N Sbjct: 536 GVIMSDAPIIDIIPIMKRESDGHIVTQFDYASCESLGLVKMDFLGLRNLTIIDDALA--N 593 Query: 574 KRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIA 633 R+ KN + +D+ +PLDD + + +L+R++T VFQL+S ++ L++ +QPD F+D+ A Sbjct: 594 IRQNKNTK--VDLENLPLDDPEVYKLLRRADTLGVFQLDSGPIRQLLELMQPDSFDDISA 651 Query: 634 LVALFRPGPLQSGMVDNFIDRKHGREEIS--YPDVQWQHESLKPVLEPTYGIILYQEQVM 691 +AL+RPGP+ + N+ RK+ ++EI +P++ + L +L TYG+I+YQEQV+ Sbjct: 652 AIALYRPGPMGARSHTNYALRKNRKQEIDHIHPELT---KDLSVLLSSTYGLIVYQEQVI 708 Query: 692 QIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKF 751 IAQ L+G+TL AD+LR AMGKKK +E+ +Q + FA G K G + +++++ F Sbjct: 709 GIAQKLAGFTLEEADVLRWAMGKKKKDELDRQYNKFANGMRKAGYSDGATEALWNVLLPF 768 Query: 752 AGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKI 811 + Y FNK+H+ AY L+SY T +LKAHYP E+MAA++T+ + +K+ + EC M +K+ Sbjct: 769 SDYAFNKAHATAYGLISYWTAYLKAHYPTEYMAALLTSVETSRDKLGLYLQECRHMCIKV 828 Query: 812 LPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDT 871 L PDIN F + + I++G+GAIK VG I+ I+E R G F L D R Sbjct: 829 LLPDINVSRSGFTPSGEN-ILFGLGAIKNVGANLIDDILEVREDGP-FVSLIDFVQRMPH 886 Query: 872 KKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEP 931 LNRR + LI +GAFD + P+R +LM+ L+ +A+ + D G+L E Sbjct: 887 SVLNRRSVMSLIQAGAFDSIHPNRRSLMDIHRSVLENCQANARRSDVSLLD--GLLDE-- 942 Query: 932 EQIEQSYASCQP-----WPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMH 986 Y P W + L ERE LG+Y++ HP++ + ++ + + Sbjct: 943 ------YEGFSPPDIPDWNNRERLKYEREMLGMYVSSHPLDGLEDSLLKF-RDCSIAECI 995 Query: 987 PTERGKVITAAGLVVAARVMVTKR-GNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKD 1045 + VI AGL+ + V +R G R L+D SG +++ML + + + L D Sbjct: 996 SRKPQDVIRVAGLITSVEHKVARRTGMRYAHAILEDTSGEIQIMLSGQNYNNFSEQLVTD 1055 Query: 1046 RILIVSGQVSFDD 1058 I+ V+G++SF D Sbjct: 1056 SIVSVTGRISFRD 1068 >UniRef50_C7M0P6 DNA polymerase III, alpha subunit n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M0P6_ACIFD Length = 1189 Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust. Identities = 444/1214 (36%), Positives = 652/1214 (53%), Gaps = 98/1214 (8%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL H++YSM+DG ++ L++ AAA G PALAITD NL G ++FY A G++PI Sbjct: 4 FVHLHTHTEYSMLDGASRINDLLRAAAADGQPALAITDHGNLYGALEFYKAATRTGVRPI 63 Query: 66 VGADFNV-------------QCDLLGDE-------LTHLTVLAANNTGYQNLTLLISKAY 105 +G + + + D G E HLT+LA N TGY NL L S+A+ Sbjct: 64 IGLEAYMAGGSRFERPQRRGRLDDTGGESERGEKLYYHLTLLAENETGYHNLIQLSSRAF 123 Query: 106 QRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PD 164 GY P ID + L E EGLI L+G G V + LLRG+ E PD Sbjct: 124 LEGY-YYKPRIDFELLEEHREGLIALTGCLGGLVLQHLLRGDEEGARTVAGTLREILGPD 182 Query: 165 RYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFT 224 F+EL G ++ +ELA+ GL VATND + D + H+ + + G T Sbjct: 183 NVFVELQDHGLAEQRRTNPQLLELAKHLGLRTVATNDSHYTHREDHETHDALLCVQTGAT 242 Query: 225 LDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF--- 281 ++D R R + Y++S EEM E F ++PEA T++IA+RC++ + G+ LP+ Sbjct: 243 INDQNRFRFEGSEHYLKSAEEMRERFREVPEACDATLDIAERCSLELTFGQPALPEIDIP 302 Query: 282 -----PTGDMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMG 336 T D +YL + +G R D +E ER+ EL VI MG Sbjct: 303 VRITGATYDERAGEYLAELVWQGARARYG---NDLDETTS------ERIRYELSVIESMG 353 Query: 337 FPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPER 396 FPGYFL+V + I+ +++ + VGPGRGS AGS+VAY L IT +DPL +DL+FERFLNP R Sbjct: 354 FPGYFLVVWDLIRHAREAHIRVGPGRGSAAGSVVAYCLGITQIDPLAYDLIFERFLNPGR 413 Query: 397 VSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFV 456 MPD D+DF R ++I + A+ YG D V+QI+TF T+ A+A +RD RVLG+PY Sbjct: 414 KQMPDIDMDFDERYRGEMIRYAAERYGHDHVAQIVTFSTIKARAAVRDAARVLGYPYAVG 473 Query: 457 DRISKLIPP---DPGMTLAKAFEAEP----------QLPEIYEADEEVKALIDMARKLEG 503 D+I+K +PP LA E P L E+ E+D +V ++ +A+ LEG Sbjct: 474 DKIAKAMPPLVMGRDTPLAACLELTPGHEDGYAQAAALREMVESDPDVARVVQVAKGLEG 533 Query: 504 VTRNAGKHAGGVVIAPTKITDFAPLYCD-EEGKHP-----VTQFDKSDVEYAGLVKFDFL 557 + R G HA VVI+ +T++ P+ + G+ P VTQF+ VE GL+K DFL Sbjct: 534 LRRQDGIHAAAVVISRDPLTEYLPIQRKPDPGQDPSEAPIVTQFEMHGVEELGLLKMDFL 593 Query: 558 GLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMK 617 GLRTL++I+ A+E+I R + LDI AI LDD+ +F ML+ + VFQLE M+ Sbjct: 594 GLRTLSVIDRAVELIRATRGVD----LDIDAIALDDEATFAMLRAGDAIGVFQLEGGPMR 649 Query: 618 DLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVL 677 L+++L P FED+ ALVAL+RPGP+ + M ++ DRK+GR+ +SY H L+PVL Sbjct: 650 QLMRQLAPSRFEDVAALVALYRPGPMAANMHVDYADRKNGRKPVSY-----LHPDLEPVL 704 Query: 678 EPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGIN 737 TYG+++YQE +M++AQ ++GY+L AD LR+A GKK +A +R F G +G Sbjct: 705 RDTYGLMIYQESMMRVAQQIAGYSLEEADNLRKACGKKIRTLIAAEREKFIAGCVASGYG 764 Query: 738 AELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKV 797 EL +FD++E FA Y FNKSH+ Y LVSYQT +LKA++P +F+AA++T+ D+ +K+ Sbjct: 765 PELGTALFDIIEPFADYAFNKSHAFGYGLVSYQTAYLKANFPVQFLAAILTSVRDDKDKL 824 Query: 798 VGLVDECWRMGLKILPPDINSGLYHFHVNDDGE---IVYGIGAIKGVGEGPIEAIIEARN 854 + + + +L PD+N+ F V E I +G+ A++ VGEG + +II+ R Sbjct: 825 AVYLADAAAHHIAVLVPDVNASDVDFSVTSGPEGEQIRFGLAAVRNVGEGLVRSIIDERT 884 Query: 855 KGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAK 914 + G F D R D LNRR LE LI +GAFD G R AL +L AL+ ++ + Sbjct: 885 RSGPFTSFADFLLRVDASVLNRRTLESLIKAGAFDSFGHPRRALYEALEGALERVNERRR 944 Query: 915 AEAIGQADMFGVLAEEPEQIEQSYASCQ------PWPEQVVLDGERETLGLYLTGHPINQ 968 G G L EEP + E + W +L ER+ LGLY++ HP++ Sbjct: 945 QRDRG----LGSLFEEPSEDESVVPDLRLDIGSVEWSTPELLAFERDMLGLYVSAHPMHG 1000 Query: 969 Y-LKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLE 1027 + + R V + T G+ +T G + A T++G+ + L+D +E Sbjct: 1001 VNVDRLGRDVTPILDLIEADTPPGEPVTVVGAITALAQRTTRKGDLMATLRLEDLQAGIE 1060 Query: 1028 VMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEA-------REKY 1080 VM+F + + L++D I+ ++G++ D G + A + +D A + Sbjct: 1061 VMVFPKTMADHGLHLKQDAIVAITGRI--DGREDGRTLVALAIEPVDTAALTSDDAADGA 1118 Query: 1081 ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRVSPS 1139 + + L R L RLR L H GT L + +RF A+ V P Sbjct: 1119 TDAVVLRLPKRLAVPDSLVRLRNVLADH-VGTARAVLDIE------GMRFELASTSVRPG 1171 Query: 1140 DRLLNDLRGLIGSE 1153 L+ LR + G + Sbjct: 1172 SSLVGHLRNVFGDQ 1185 >UniRef50_C0QYZ2 DNA polymerase III, alpha subunit n=2 Tax=Brachyspira RepID=C0QYZ2_BRAHW Length = 1236 Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/1084 (35%), Positives = 613/1084 (56%), Gaps = 51/1084 (4%) Query: 6 FVHLRVHSDYSMIDGLAKTAPL--------------VKKAAALGMPALAITDFTNLCGLV 51 FVHL VH+ YS++DG A+ L + +A LGMP +A+TD N+ G + Sbjct: 3 FVHLHVHTQYSILDGAARIKSLYSKKDKTKRLIPGLIDRAKELGMPGIAMTDHGNMFGAM 62 Query: 52 KFYGAGHGAGIKPIVGADFNVQCDLLGDE---------LTHLTVLAANNTGYQNLTLLIS 102 +F+ GI PI+G + V D+ HL +LA + GY NL L++ Sbjct: 63 EFFSEAKDKGIIPIIGCEVYVAPKTRFDKKIENSEEKSAMHLILLAKDKEGYNNLCKLVT 122 Query: 103 KAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF 162 Y G+ P +D + + + N+GLI LS G++ ++ + + + +Y+ F Sbjct: 123 FGYTEGF-YYRPRVDHELIEKYNKGLICLSACMGGEIPIAIRKKDYKQASKLAEYYKSIF 181 Query: 163 PDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDG 222 + +++EL P+E++ A +LA+ + +V TNDV ++ D AHEI +AI Sbjct: 182 GNDFYIELQDHNIPEEKALNSALYQLAKHHNIELVVTNDVHYVSKEDAKAHEILLAIQTK 241 Query: 223 FTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRC-NVTVRLGEYFLPQF 281 TLD P+R + S + ++++EEEM + FA +P+A NTV+IA++C ++ + Y++P + Sbjct: 242 ATLDSPRRYKFPSNEFHLKTEEEMMKSFAKLPKAFENTVKIAEQCQDLNIMTKTYYMPNY 301 Query: 282 --PTGDMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPG 339 P G+ T L +GL + P E +RLE EL VI +MGF G Sbjct: 302 ELPNGETETTA-LRNMCMDGLNKYYNNNIPKEAM---------DRLEMELGVIGKMGFEG 351 Query: 340 YFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSM 399 YFL+V +FI +++++ V VGPGRGS AGS+VA+A IT ++PL+++LLFERFLNPER SM Sbjct: 352 YFLVVQDFINYARNHDVAVGPGRGSAAGSIVAFATGITKVNPLDYNLLFERFLNPERKSM 411 Query: 400 PDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRI 459 PD DVDF +KR+ +I++V + YG+D VSQI TFG + ++VIRDV RV+G DR+ Sbjct: 412 PDIDVDFQDDKREVIIDYVKEKYGKDNVSQIATFGALGGRSVIRDVCRVMGIDLATADRL 471 Query: 460 SKLIPPDPG--MTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVI 517 +K IP D + + + + EI E + E+K + +++ +L+G+ RN G HA GV+I Sbjct: 472 AKSIPDDVKRVVDIYDHPDCAALVKEI-EGNRELKNMYEISTRLDGLVRNVGLHAAGVII 530 Query: 518 APTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRA 577 + I D AP+Y D + Q++ + VE AGL+K DFLG++ L +I A++ I R Sbjct: 531 SSHPIMDLAPVYQDSKTGTRACQYEMTYVESAGLIKMDFLGIKNLRLIKDAIKDIKDRYG 590 Query: 578 KNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVAL 637 +DI IPLDD+ +D+ ++++T VFQ ES GM+ ++ +QP F+D+++ VAL Sbjct: 591 ----IEIDIDKIPLDDEAVYDIFRKADTGGVFQFESPGMRQMLINIQPTGFDDLVSSVAL 646 Query: 638 FRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVL 697 +RPGPL SGM ++ DRK+ R+EI Y +H L+P+L+ + G+++YQEQ+M I++V+ Sbjct: 647 YRPGPLNSGMDKDYADRKNKRKEIVY-----KHPDLEPILKESQGVLIYQEQIMAISRVI 701 Query: 698 SGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFN 757 G+T AD LR+AMGKK E+M F +G + G + EL +FD ++ FA YGFN Sbjct: 702 GGFTAAEADDLRKAMGKKIVEKMNSMEEKFIKGGLERGYDKELLTYLFDTMKGFAEYGFN 761 Query: 758 KSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDIN 817 KSHS YAL++YQ ++KAHYP E+ A++ + +T+K+ ++E + ++I+ + Sbjct: 762 KSHSVCYALIAYQEAYIKAHYPMEYYVALLNTVIADTDKISLYLNEIKQKNIEIVTASVF 821 Query: 818 SGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRR 877 F DG+IVY + A+KGVG AI E R K G F+ L D R D +NR+ Sbjct: 822 ESDALFS-QKDGKIVYALHAVKGVGIHAALAIQEEREKNGQFKNLEDFVKRVDVHLVNRK 880 Query: 878 VLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQS 937 V E LI GAF G +AL++SL L A + K GQ +F ++E+ Sbjct: 881 VYETLIKCGAFSEFGHTESALLSSLDAILAHASNYQKETLSGQTMLFDSMSEDDSGSASL 940 Query: 938 YASCQ-PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITA 996 Q + ++++ E+E LG L HP +Y+ +I+ L + ++ + + Sbjct: 941 VIEKQVEYASNILMENEKEVLGFSLRYHPFARYITKIDYKYFHNTLDIDNLKDKDEFLLP 1000 Query: 997 AGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSF 1056 ++ A+ K I + +D + + + ++KY+ +LE+ +++ G+ Sbjct: 1001 CVVMSASETTTKKNTPMITLKVIDIFTEYVFYITANSQIEKYKDMLEEQTGILIKGRRDK 1060 Query: 1057 DDFS 1060 + FS Sbjct: 1061 NRFS 1064 >UniRef50_A9B8D8 DNA polymerase III, alpha subunit n=6 Tax=Chloroflexi (class) RepID=A9B8D8_HERA2 Length = 1296 Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/1087 (37%), Positives = 612/1087 (56%), Gaps = 62/1087 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL VHS+YS++DG A T + ++AA L M ++AITD + G ++FY A +KPI Sbjct: 4 FVHLHVHSEYSLLDGYATTKAIAERAAELQMDSIAITDHGVMYGAMEFYANAKKANVKPI 63 Query: 66 VGADF----NVQCDLL---GDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA---AGPI 115 +G + N D + G HL ++A N GY+NL L S+++ G G A P Sbjct: 64 IGMEAYIAPNSNKDPMVKGGKNYYHLLLIAQNEVGYRNLVKLTSRSHLDGMGKGIFARPR 123 Query: 116 IDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLEL-IRT 173 IDR L + +EGLI+ S G+V + + E VA++ + F P+ YF+EL + Sbjct: 124 IDRQLLEQYHEGLIVTSSCIAGEVIQQVQAKQRQKAIETVAWFRDLFGPENYFIELQLHN 183 Query: 174 GRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRN 233 P+ V +A +P+VATND F+ D D H +A+ TL + +N Sbjct: 184 NTPELVEINEELVRIANEMHVPLVATNDTHFVRREDLDTHSRVMAMGFNLTLQELCS-KN 242 Query: 234 YSPQQ--YMRSEEEMCELFADIPEA-LANTVEIAKRCNVTVRLGEYFLPQF--PTGDMST 288 Y + ++ S +EM + + A + NT IA CN+ + G LP+F P G Sbjct: 243 YQMDETYHIMSGDEMWDRYKIYGTAPMENTRRIADMCNLKLDFGRVELPEFDIPEGH-DA 301 Query: 289 EDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFI 348 YL +EGL +R P EE Y +RL EL VINQ GFP Y LIV +++ Sbjct: 302 ASYLRLICEEGLIKRCNG-NPTEE--------YVQRLSYELDVINQTGFPDYMLIVWDYV 352 Query: 349 QWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCM 408 ++++ NG+P P RGS SLV Y L ITD+DP++ LLFERFL+PER+ MPD D DF Sbjct: 353 KFARSNGIPCLP-RGSAGASLVLYCLGITDVDPVQNKLLFERFLSPERLEMPDIDTDFAD 411 Query: 409 EKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP- 467 +R ++++++A YGR+ V+QIIT+GT+ AKA +RD+GRVL P VDR++KLIP P Sbjct: 412 ARRGEILDYIATKYGRENVAQIITYGTLGAKAALRDMGRVLDIPLSEVDRVAKLIPTLPV 471 Query: 468 GMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAP 527 GMT+AK+ + P+L +IY+ D +++ L+D A+K+EG ++ G HA GVV++ + + P Sbjct: 472 GMTIAKSLDKVPELKQIYDTDPKLRELMDWAQKVEGRMKSVGTHACGVVVSRHPLENMVP 531 Query: 528 LYCDEEGKHPV-TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586 L + +H V F+ + GL+K D LGL L++ AL++I + K + + Sbjct: 532 LQRTTKDEHGVMAAFEGPTLAKMGLLKMDILGLTNLSVAAEALQLIEQTTGKT----MWL 587 Query: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 + IPLDDKK+F+ L R ET VFQLES GM + +L+P +D+ +VAL+RPGPL+ Sbjct: 588 SDIPLDDKKTFEALGRGETVDVFQLESAGMTRYLVQLKPTRVDDLYGMVALYRPGPLEQ- 646 Query: 647 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 + +I K+ I Y H LKP+LE TYG+I+YQEQ+MQ+ Q ++ YTLG A Sbjct: 647 -IPVYIHNKNNPHAIKY-----IHPILKPILEDTYGVIVYQEQIMQLLQAVAEYTLGEAY 700 Query: 707 MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 ++ +A+ KK E MA+ F EG + G+ A ++++L+ FAGY FN+ HS Y L Sbjct: 701 IVIKAISKKNKELMAENSVRFKEGCLRKGLTQAQADELWELILPFAGYSFNRPHSTLYGL 760 Query: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 +SYQT WLK +YP E+M A ++A ++V V E R+G+ + PPD+N F + Sbjct: 761 LSYQTAWLKNNYPTEYMTATLSAASGEIDEVAKSVAEASRLGVAVSPPDVNGSKEGFTIV 820 Query: 827 D-DGE----------IVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLN 875 D GE I +G+ AI+ VG GPI+AI++ R++ G F + D CAR D LN Sbjct: 821 DIAGELPEGIKYNRGIRFGLSAIRNVGVGPIQAILKVRDESGPFSSIEDFCARVDRGVLN 880 Query: 876 RRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIE 935 +RV+E L+ GA D L R + L A+ A + KA GQ +F +L EQ Sbjct: 881 KRVMESLVKCGAMDSLPGTRHQKLAILDRAISAGHETQKAREAGQNSLFDMLGGG-EQTS 939 Query: 936 QSYASCQPWP--------EQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHP 987 S P+P ++ +L+ E+E LG+Y++ HP+ Q L G + L + Sbjct: 940 TPTISPIPFPPAATGLEMQRELLNWEKELLGMYISEHPMAQALANAPHDPGRISLGMIDK 999 Query: 988 TERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRI 1047 G I G++ + + TK+G+ + + ++D G +E + F L++Y +LL D I Sbjct: 1000 KHIGTTIRLIGMINNTKRIQTKKGDSMLVGKVEDLEGEIEFVAFPRTLEQYAELLVDDAI 1059 Query: 1048 LIVSGQV 1054 + ++ +V Sbjct: 1060 VQITAKV 1066 >UniRef50_B4CWT5 DNA polymerase III, alpha subunit n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CWT5_9BACT Length = 1219 Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/847 (43%), Positives = 521/847 (61%), Gaps = 50/847 (5%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS FVHL H++YS +DG + +KKA GMPALAITD NL G ++FY AG + Sbjct: 1 MSADSFVHLHCHTEYSTLDGAVRIKEAMKKAKEYGMPALAITDHGNLFGAIEFYQAGKSS 60 Query: 61 GIKPIVGADFNVQCD--------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAA 112 G+ PI+G + V D + HLT+LA N+ GY+NL L+S A+ G Sbjct: 61 GVNPIIGCEVYVAPDSHLKKTATTQRESAFHLTLLAQNDQGYRNLVKLVSIAHLDGM-YY 119 Query: 113 GPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELI 171 P ID++ L + +GLI LSG G++ ++++ N E Y + P+ +F+EL Sbjct: 120 KPRIDKELLAQYGKGLIGLSGCLKGEINQAIIEDNLPKAKELTGAYRDILGPENFFIELH 179 Query: 172 RTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRP 231 G + LA+ GL +VA NDV F+ +D AH+ + I G + D +R Sbjct: 180 NHGIEAQLKCNKTLPVLAKEFGLGLVAANDVHFLQRTDHAAHDALICIGTGSNIADERR- 238 Query: 232 RNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDY 291 +Y + Y +S EM LFA++PEA NT+ IA+RCN+T+ + P + +Y Sbjct: 239 MHYVQEVYFKSPAEMRALFAEVPEACDNTLAIAERCNITIDTSPKYPNYTPPPGRTQNEY 298 Query: 292 LVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWS 351 L + G+ R D + + ++ R E E+ V+ + GF YFLIV +FI W+ Sbjct: 299 LREITLAGMHRRYG---SDADSEIVQK-----RFELEISVLEKQGFTNYFLIVWDFINWA 350 Query: 352 KDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKR 411 K++G+PVGPGRGS AGS++AYA+ ITD+DP++F LLFERFLNPERVS PD DVDFC+ +R Sbjct: 351 KEHGIPVGPGRGSAAGSMIAYAMGITDIDPIKFKLLFERFLNPERVSPPDIDVDFCVNRR 410 Query: 412 DQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL 471 +VI++V YG AVSQIITFGT+ AK+V+RDV RV G YG DR++K+IP + G+TL Sbjct: 411 GEVIDYVRQKYGERAVSQIITFGTLGAKSVLRDVARVQGWSYGDADRVAKMIPNELGITL 470 Query: 472 ----------------AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGV 515 A A + P+L + + + L D+A KLEG+TR G HA GV Sbjct: 471 KGLDKKNKETGQMDHIAGAIDKNPELKKAVDTEPATAQLWDVATKLEGLTRGVGVHAAGV 530 Query: 516 VIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKR 575 VI ++D+ PL V+Q+ + G++K DFLGL+TLT+I A+ +I R Sbjct: 531 VIGDRDLSDYIPL-TRANDNSIVSQYAMGPLTDVGMLKCDFLGLKTLTVITDAVVLIRHR 589 Query: 576 RAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALV 635 EP D+ IPL+++ +FD+L R ET +FQLES GM + ++ ED+ A++ Sbjct: 590 -----EPDFDVDKIPLENQPTFDLLNRGETIGIFQLESGGMVSVCRQFDIKDIEDINAIL 644 Query: 636 ALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQ 695 AL+RPGP+ ++ ++I RK G+ ++ P H+ L + + TYG+++YQEQVMQ AQ Sbjct: 645 ALYRPGPMD--LIPDYIKRKKGKAKVKAP-----HKLLLDMTKETYGVLVYQEQVMQAAQ 697 Query: 696 VLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEK-NGINAELAMKIFDLVEKFAGY 754 +L+GYTLGGAD+LRRAMGKK E+MAK+R F EG + + I + A +IFD +EKFAGY Sbjct: 698 ILAGYTLGGADLLRRAMGKKDKEKMAKERIKFCEGCKNLHNIEEKTANEIFDTLEKFAGY 757 Query: 755 GFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPP 814 GFN+SHSAAYA +SYQT +LKA+YP EFMAAVM+ ++ NT+K+ V EC RMG+ ILPP Sbjct: 758 GFNRSHSAAYAWISYQTAYLKANYPVEFMAAVMSNEVSNTDKISIFVGECERMGMTILPP 817 Query: 815 DIN-SGL 820 D+N SGL Sbjct: 818 DVNKSGL 824 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 78/230 (33%), Positives = 122/230 (53%), Gaps = 7/230 (3%) Query: 829 GEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAF 888 G I YG+ AIK VGE + A I RN G F+ L D C R D KK+N++ LE L+ GAF Sbjct: 897 GSIRYGLAAIKNVGEAAVAAAIVERNNKGAFQSLEDFCGRVDVKKMNKKALECLVKCGAF 956 Query: 889 DRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFG---VLAEEPEQIEQSYASCQPWP 945 D G RA L + + AL AA + A+GQ MF + + + + S PW Sbjct: 957 DWTGVERAQLHSEIDGALAAASSANRDRAVGQFSMFDDFEISGKATKTTKGSAPKVAPWS 1016 Query: 946 EQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARV 1005 L E+E LG Y+TGHP+++Y +E++V +L + E +T G + + Sbjct: 1017 STEKLAYEKELLGFYVTGHPLDEYRSALEKFVPIAKLSE---EEDKSTVTIGGALASVEK 1073 Query: 1006 MVTKRGNR-IGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQV 1054 TK+ N+ + L+D + LEVM++ + +K Q LL + ++ ++G++ Sbjct: 1074 KFTKKDNKPFAVVVLEDVTASLEVMIWNETFNKSQALLVQGSVVSITGRL 1123 >UniRef50_Q8CXA8 DNA polymerase III (Alpha subunit) n=1 Tax=Oceanobacillus iheyensis RepID=Q8CXA8_OCEIH Length = 1106 Score = 656 bits (1692), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/1166 (35%), Positives = 638/1166 (54%), Gaps = 81/1166 (6%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F HL + S YS+++ L+ KA ALA+TD L G + FY A GIKPI Sbjct: 3 FTHLYIKSGYSLMESTITIPKLIDKAKQERQEALALTDIGVLYGAISFYKACIDNGIKPI 62 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 +G V+ + L +E +LA NN GYQNL L + G + ++ ++ Sbjct: 63 IGLTVMVKDEQL-NETVPCVLLAKNNNGYQNLISLSTNININGNEEVEKSLLDNYTDDI- 120 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF---PDRYFLELIRTGRPDEESYL 182 G++ ++ G L S+ + F ++ F DR+ LE+I++ Sbjct: 121 VGILPVTTGMEKVFTEELGTYFSSWSN---LFSDDDFYIGVDRHSLEVIQS--------- 168 Query: 183 HAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRS 242 ++ +P+ + +VR++ +D A++ AI G D + + + Q + + Sbjct: 169 ------LQSLSIPLTSIQEVRYLHENDHIAYDCLQAIRYGEKWDGTE-INSKNKQLHFTT 221 Query: 243 EEEMCELFADI-PEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTED-YLVKRAKEGL 300 E+EM +LF I PEALANT I +CN+ + + E ++P FP + T D YL + + Sbjct: 222 EKEMEDLFQYIAPEALANTERIKDKCNLEINMNERYIPSFPVPNSLTADSYLQQLCISKI 281 Query: 301 EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360 EER +R + RL EL+VI M + YFLIV +FIQ++KDN + VGP Sbjct: 282 EERYK----------ERNDQIMNRLNYELEVIQSMNYSDYFLIVADFIQYAKDNQIAVGP 331 Query: 361 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420 GRGS AGS+VAY L IT++DPLE++LLFERFLNPER+SMPD DVDF +RD+VI++V + Sbjct: 332 GRGSSAGSIVAYLLGITEVDPLEYNLLFERFLNPERLSMPDIDVDFSDVRRDEVIDYVRE 391 Query: 421 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQ 480 YG+D V+QIITFGT AA++V+R++ + L ++ + K IP +L + + + Sbjct: 392 KYGQDHVAQIITFGTFAARSVLRELMKTLDVHEMDMNYVMKEIPTQSNRSLTDILKEKEE 451 Query: 481 LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQ 540 L + +K L +A KLEG+ RN HA GVVI+ K+T+ PL + +TQ Sbjct: 452 LKAYVKQSSRLKLLFSIAVKLEGIPRNVSTHAAGVVISEKKLTNHVPLTIGTNQTY-LTQ 510 Query: 541 FDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDML 600 + ++E GL+K DFLGLR L++I E +N + L +A IP D+ +F +L Sbjct: 511 YAMGELETIGLLKMDFLGLRNLSLI----EKVNTAITNSRHRSLQLAEIPEQDEATFQLL 566 Query: 601 QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE 660 ++ T VFQLES GMK +++ L P FED++A+ AL+RPGP+ + +I RK E Sbjct: 567 RKGHTNGVFQLESDGMKKVLQELMPSTFEDIVAVNALYRPGPM--DFIPTYIRRKKNVEP 624 Query: 661 ISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM 720 +SYP H LKP+L TYG+++YQEQ+MQIA V++G+TLG AD+LRRA+ KKK +M Sbjct: 625 VSYP-----HPDLKPILSKTYGVLIYQEQIMQIANVIAGFTLGEADILRRAVSKKKESDM 679 Query: 721 AKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA 780 KQ+ F +G G E+A +IF + +FA YGF +SH+ AY+ +SYQ ++KAHYP Sbjct: 680 YKQKQAFIDGCINRGYKKEVADEIFSWIVRFANYGFPRSHAVAYSKISYQLAYMKAHYPN 739 Query: 781 EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG 840 F A +++ + EK+ + E ++ ILPPDIN + V + +I G+ AIKG Sbjct: 740 AFYAELISGVRNQQEKINTYIQEFKKLNGNILPPDINKSYGKYAV-ERKDIRMGLSAIKG 798 Query: 841 VGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMN 900 +G PI+ I++AR K G F+ FD C R + K ++R ++E L++ G FD + +RA+L+ Sbjct: 799 IGIQPIQEILQAR-KDGTFKNFFDFCMRVNLKIVSRTIIENLVLVGVFDSIYRNRASLLA 857 Query: 901 SLGDALKAADQHAKAEAIGQADMFGVLAEEP----EQIE--QSYASCQPWPEQVVLDGER 954 S+ +AI Q ++F ++P +QIE +SY + + + L E+ Sbjct: 858 SID------------QAIEQKELFKEFLDQPSLFQDQIEMVESYTEIEDFTKIKKLSDEK 905 Query: 955 ETLGLYLTGHPINQYLKEIERYVGGVRLKDMHP-TERGKVITAAGLVVAARVMVTKRGNR 1013 E LG Y++ HP+ +Y K++ R G + L KVI A +V A +V+ TKRG+R Sbjct: 906 ELLGFYVSSHPLKEYRKKL-RSAGNITLSHAKKLVNTRKVIHAVVIVDAMKVIRTKRGDR 964 Query: 1014 IGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDI 1073 + T+ D ++ +LF D + +E+ +L +SG V +D L++ + Sbjct: 965 MAFLTISDEELEIDAVLFPDLFRQISNKVEEGMLLQISGVV--EDRKQRLQIVIQSGHPF 1022 Query: 1074 DEAR-EKYA-RGLAISLTDRQIDDQLLNRLRQ--SLEPHRSGTIPVHLYYQRADARARLR 1129 E+ E++ G T Q++ +LRQ LEP G IP+ +Y + D + R Sbjct: 1023 QESELERHEPSGEVFIRTHSSKRTQVIEKLRQLAELEP---GEIPIIVYDR--DLKQSYR 1077 Query: 1130 FGATWRVSPSDRLLNDLRGLIGSEQV 1155 + + ++ L G G E V Sbjct: 1078 LSEHYSLRVDRKVQKQLEGFFGKENV 1103 >UniRef50_C5B539 DNA polymerase III, alpha subunit n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B539_METEA Length = 1316 Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/1016 (40%), Positives = 576/1016 (56%), Gaps = 72/1016 (7%) Query: 1 MSEPRFVHLRVHSDYSM---IDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAG 57 M++ FVHL V SD+S G++ LV +AAALG PALA+TD N+ G+ KF A Sbjct: 1 MTDRPFVHLNVLSDFSFSHGTRGVSGVKELVARAAALGQPALALTDDMNMFGVYKFSSAA 60 Query: 58 HGAGIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKA-YQRGYGAAGPII 116 G++PIVG V+ + + +LA++ TGY NL L+ A + G Sbjct: 61 AEKGVQPIVGTKIWVRAGAT-NVFGTMQLLASSETGYVNLCRLLKVALFPDAEGRISAHK 119 Query: 117 DRDWL-------IELNEGLILLSGGRMGDVGR--SLLRGNSALVDECVAFYEEH------ 161 DR ++ E ++ ++ LSGG+ G + R R N+ + +++ E+ Sbjct: 120 DRSYVQLGHLLNAEYSQDVVCLSGGKDGFMSRVWDAARQNAQGAADWLSWVEDPGGLAAV 179 Query: 162 FPDRYFLELIRTGRPDEESYLHAA--VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAI 219 F DR+F E+ R G +E + A ++ A +G PVVAT V + DA EI A+ Sbjct: 180 FGDRFFFEICRNGVETDEDFAREAWLLDTAARQGRPVVATTQVLYAAEERHDALEILSAV 239 Query: 220 ---HDGFTLDDPKRPRNYSPQQY-MRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE 275 +G P R +Y MRS+ EM ELFAD+P A N +E+A+ V + Sbjct: 240 ARKENGSITVGPGTLRARVEARYHMRSDAEMRELFADLPTAYDNALEVARCTAFKVAKRK 299 Query: 276 YFLPQFPTGDMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQM 335 LP+F S + LV +A+ GLEER L EE R EY +RLE EL VI +M Sbjct: 300 PRLPRFDAAGRSEREELVHQARTGLEERFGELGTSEEAR----QEYRDRLEFELGVIGKM 355 Query: 336 GFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPE 395 GF GYFLIV +FI+W+ + VPVGPGRGSGAGSLVAYAL+IT+LDPL F LLFERFLNP+ Sbjct: 356 GFDGYFLIVSDFIKWALAHDVPVGPGRGSGAGSLVAYALRITNLDPLRFGLLFERFLNPD 415 Query: 396 RVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGH---- 451 RVSMPDFD+DFC++ R V+++V + YG D VSQI +FG + +K I+D GRVL H Sbjct: 416 RVSMPDFDIDFCIQGRASVVQYVRERYGSDLVSQIASFGEIKSKTAIKDAGRVLTHERDG 475 Query: 452 PYGF--VDRISKLIPPDPG--MTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRN 507 YG+ D ++KL+P G TL +A++ P L + +A E+ + L D ARK+EG+ R Sbjct: 476 SYGYSETDGMTKLVPMVQGNPYTLKRAYDEIPDLRQFVDASEKTRVLFDNARKIEGLLRQ 535 Query: 508 AGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINW 567 G HA G++I + + P+ + P+ QFD E GLVKFDFLGL TL+++ Sbjct: 536 RGVHAAGILIGDVPLEELLPVTWNATDGMPLAQFDLKGAEDVGLVKFDFLGLETLSVLKL 595 Query: 568 ALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDC 627 A + + R + LD IPLDD +++ R T A+FQ ES GMK ++ ++P Sbjct: 596 ARQYVKDSRGVD----LDFDKIPLDDAGVYEIFARGMTNAIFQFESGGMKRALREMKPTR 651 Query: 628 FEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQ 687 ED+IA AL+RPGP++ M+ + D K+GR+E YP+ E KP+LE T+GI++YQ Sbjct: 652 IEDLIAANALYRPGPME--MIPVYNDCKNGRQEPDYPE---PREKTKPILEETFGIMVYQ 706 Query: 688 EQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDL 747 EQVM +A+ ++G TLG AD+LRRAMGKK EM Q++ F +GA ++G +A A ++FD Sbjct: 707 EQVMAVARAVAGLTLGQADLLRRAMGKKIKAEMDAQKAGFVKGALEHGTSARTAEELFDK 766 Query: 748 VEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMT--ADMDNTEKVVGLVDECW 805 + KFA YGFNKSHSAAYAL++Y T WLK HYP EF AAV++ A +N ++ + ++ Sbjct: 767 IAKFAEYGFNKSHSAAYALIAYHTGWLKKHYPQEFYAAVLSFEAAKNNVHEMSLVKEDLD 826 Query: 806 RMGLKILPPDINSGLYHF---HVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFREL 862 G+ +LPPD+N F G I +G+ IKG+ G I+A++ R G FR + Sbjct: 827 AFGIPLLPPDVNRSTGQFAPERTEQGGAIRFGLVGIKGLSGG-IDAMVAEREANGPFRTV 885 Query: 863 FDLCARTDTKKLNRRVLEKLIMSGAFDRL-----GP---HRAALMNSLGDALKAADQHAK 914 D RT NR +E L GAF L GP +RA + A + AK Sbjct: 886 ADFGRRT-AGLFNRSQIENLAAVGAFVGLPIVAGGPPETNRAKAAIAAQFFANGAKREAK 944 Query: 915 AEAIGQADMFGVLAEEP---EQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPIN 967 + D FG+ A E E++ + S WP+ + D E +G Y HP+ Sbjct: 945 S-----TDQFGLFAAEETAREELPEEMHSTAEWPD--IPDREFRAVGFYFDQHPLK 993 >UniRef50_Q8KTR8 DNA polymerase alpha subunit n=1 Tax=Candidatus Tremblaya princeps RepID=Q8KTR8_TREPR Length = 1083 Score = 648 bits (1672), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/981 (38%), Positives = 565/981 (57%), Gaps = 52/981 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHLR+HS+YSM DG+ + V A A +LA+TD N+ G VKFY A +G+KPI Sbjct: 18 FVHLRMHSEYSMHDGMVRVEDAVNAARADMQCSLALTDLNNVFGAVKFYKAAVRSGVKPI 77 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLI--- 122 VG ++ GD + + LA + GY+N+ +++ A+ +D WL Sbjct: 78 VGCHLLLR-GAFGDT-SSVLALARSGGGYRNMCRILTAAWSDAATCVEARVDMRWLAGSP 135 Query: 123 ELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYL 182 + +G+++LSG G +GR ++ GN + V + ++LEL R+G E+Y+ Sbjct: 136 RILKGIVVLSGALDGPIGRHIIEGNYSAARRSVDDWLTMTQGSFYLELQRSGHSGTETYV 195 Query: 183 HAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRS 242 H A+EL+ +PVVAT+ ++FI SD+ H +R + G TL + ++ +Q+ +S Sbjct: 196 HRALELSMYSMVPVVATHPIQFIAPSDYPLHCVRCGMAAG-TLGS-RATGMFTREQHFKS 253 Query: 243 EEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTE-DYLVKRAKEGLE 301 E M +F DIP A++NT IA+ CN+ + +G P F E L GL Sbjct: 254 RESMSRIFRDIPSAISNTCAIARMCNLDMDIGRLRRPVFAVCSPCNEASALACTLGSGLR 313 Query: 302 ERLAFLFPDEEERLKR----RPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVP 357 R+ + R+ R R EY R+ E +++ MGF GYFLIV +F+ W++ G+P Sbjct: 314 SRIM------DGRMPRFTGTRREYAARIREEYRIVAGMGFCGYFLIVSDFVGWARARGIP 367 Query: 358 VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEH 417 VG GRGSGAGSL+AY L ITD+DP++ LLFERFLNPERV+MPD D+DFC E RD+V+++ Sbjct: 368 VGSGRGSGAGSLMAYVLGITDIDPIQHGLLFERFLNPERVTMPDLDIDFCQEGRDRVVQY 427 Query: 418 VADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAF 475 V Y +V+QI TFGTMAA+A +R+ R +G Y D I++L+P PG +T+ + Sbjct: 428 VRRRYSNGSVAQITTFGTMAARASVREAARAMGVSYTLADSIARLVPIRPGARVTIPNSL 487 Query: 476 EAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGK 535 + L Y ++ +V+ LID A ++EG+ RN HAGG++I+P I D PLY Sbjct: 488 KEVRMLRSRYASEGDVRLLIDTASRMEGLVRNMAVHAGGIIISPADIQDLCPLYQQAGSI 547 Query: 536 HPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALE-MINKRRAKNGEPPLDIAAIPLDDK 594 PV+Q DK D E GLVKFDFLGL TLTI++ A ++ RA + P D Sbjct: 548 VPVSQLDKDDAESLGLVKFDFLGLTTLTILSCAARCVVGTGRAVSQHSLCG----PPCDS 603 Query: 595 KSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDR 654 +F +LQ ++T AVFQLE GM++ ++ PD D+IAL++L+RPGP++ +V ++ R Sbjct: 604 ATFGLLQAADTVAVFQLEGIGMQEALRITVPDRLGDIIALISLYRPGPMR--LVRSYCRR 661 Query: 655 KHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK 714 KHG E D E L P+L TYG+++YQEQVM+IAQ + GYT G AD+LRR M + Sbjct: 662 KHGVEAAFVVD-----ERLLPILGETYGVMVYQEQVMRIAQAMGGYTPGEADLLRRVMSR 716 Query: 715 KKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWL 774 K+P +MA R F GA + GI A+ +F+ ++KFA YGFNKSH+AAYA +SYQT W+ Sbjct: 717 KQPRDMAAHRISFVNGASRLGIGGSSAVAVFEHIKKFASYGFNKSHAAAYATMSYQTAWV 776 Query: 775 KAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH------VNDD 828 KA +P +FMAA M+ + + +++ L +C R G+ + PD+N Y F Sbjct: 777 KARHPVDFMAANMSGSLRDYDRLRLLRLDCARRGVPLRAPDVNRPSYRFTPISCYGSEGH 836 Query: 829 GEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAF 888 G IVYG+GA+K GE + I R FR L+D AR +++ + R +E LI +GAF Sbjct: 837 GYIVYGLGAVKCGGEAVVRDIARCREDRP-FRSLYDFLARINSRIVKRSAVECLIKAGAF 895 Query: 889 D-RLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQ 947 D + G RA ++ L A++ D+H + + ++P A+ W + Sbjct: 896 DCKPGGARATMLAVLPAAMR--DRHEPTALLWR-------IQQPTSAACLIAA-SAW--R 943 Query: 948 VVLDGERETLGLYLTGHPINQ 968 + E E LG Y + HP ++ Sbjct: 944 FAVQHESEALGYYFSIHPFSR 964 >UniRef50_C3CTJ5 Putative uncharacterized protein n=1 Tax=Bacillus thuringiensis Bt407 RepID=C3CTJ5_BACTU Length = 1237 Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/1200 (34%), Positives = 652/1200 (54%), Gaps = 80/1200 (6%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 R+V L H+ YS++DG K +V K A AITD + G + FY A KP Sbjct: 73 RYVSLHGHTGYSLLDGATKIHEMVAKTEW----ASAITDHGVMYGTLDFYKKMKKANKKP 128 Query: 65 IVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL 124 I+G + ++ E H +LA N TGY+NL L S ++ Y P + +WL + Sbjct: 129 ILGFEAYIETLDGKKEGKHQLLLAINATGYRNLVKLTSMGFENKY--YKPHVKLEWLEKY 186 Query: 125 NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRTGRPDEESYLH 183 +EG++ S G V +++++G+ L + V + F + Y++E+ R G +EE Sbjct: 187 SEGVVSTSSCLGGLVPQAIIKGDMDLARKTVQKMIDIFGKENYYIEIQRHGCEEEEVVNP 246 Query: 184 AAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSE 243 A ++LAE GL +AT+D + + D HEI + I T+DDP R ++ + Sbjct: 247 ALLQLAEEFGLKAIATSDSHYTEIEDASVHEILLCIGTKTTMDDPNRMVFPGSGYHIHTS 306 Query: 244 EEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFP--TGDMSTEDYLVKRAKEGLE 301 EEM +LF D+PE L NT+++A+R N+ ++LGE +LP+FP G S DY A EG Sbjct: 307 EEMEDLFWDMPELLDNTLDLAERINIDIQLGEIYLPEFPLPEGFESQADYFEHLAWEGFA 366 Query: 302 ERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPG 361 +R F ++E + EY ERL E++ I MGFPGYF+IV +FI+++K+ G+ VGPG Sbjct: 367 KR----FKGQKEF--KSKEYRERLTFEIETIKTMGFPGYFVIVWDFIRFAKERGILVGPG 420 Query: 362 RGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADM 421 RGS GSLVAYAL ITD+DP+ + L+FERFLNP+R+SMPD D+DF +R++VI++V ++ Sbjct: 421 RGSACGSLVAYALDITDIDPIPYGLIFERFLNPDRISMPDIDIDFEDTRREEVIDYVKEL 480 Query: 422 YGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQL 481 YG +AVS+IITFGT+AAK +RDV RVL P G + I+ IP PGMTL KA P+ Sbjct: 481 YGEEAVSRIITFGTLAAKVSVRDVARVLDKPLG--NMIANAIPEKPGMTLNKALNESPEF 538 Query: 482 PEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLY----CDEEGKHP 537 +Y +D EVK ++D+A ++EG+ RN +HA GV+IAP+ +TD P D Sbjct: 539 YNMYHSDAEVKEIVDIALRIEGLPRNVSQHACGVIIAPSAVTDHIPQVLLENTDTGAYEH 598 Query: 538 VTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSF 597 TQ++K + E GL+K DFLGLRT+ ++ A INK+R + G P+ + +IPLDD + + Sbjct: 599 TTQYNKDECEEMGLLKMDFLGLRTMGVMGRAFIDINKKRKELGLEPITLESIPLDDIRVY 658 Query: 598 DMLQRSETTAVFQLESRGMKDLIKRLQPDC-----------FEDMIALVALFRPGPLQSG 646 + + + T VFQLES GM + + L D FE +IA ++L+RPGPL Sbjct: 659 EYIAKGNTAGVFQLESAGMTNFMMELFQDAHTLDAEMGKQLFERLIAGISLYRPGPLDE- 717 Query: 647 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 + N+I E I Y Q L+P+LE TY II+YQEQ M I + L+ +T G +D Sbjct: 718 -IPNYIKNMLKPEGIEYDVPQ-----LQPILETTYNIIVYQEQCMFIVRELANFTRGQSD 771 Query: 707 MLRRAMGKKKPEEMAKQRSVFAEGAEK--------NGINAELAMKIFDLVEKFAGYGFNK 758 +R+ M KK + + F G+E+ NGI+ +A+ +++ ++KF Y FNK Sbjct: 772 TIRKGMAKKVEALLNEYGEYFVHGSEEKGITGCVANGIDEHIAIALWERMKKFGRYAFNK 831 Query: 759 SHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINS 818 SH+ YA ++ +T +L +YP E+M A + + + ++K+ + R + +LPPD+N Sbjct: 832 SHATGYANIAIKTGFLAYYYPTEYMCATLNSFITMSDKIKAYMAVSKRQKIDVLPPDVNK 891 Query: 819 GLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCAR-TDTKKLNRR 877 F V + I +G+ I+ +G+ I +IE R+ G FR D R +K++RR Sbjct: 892 SREVFTVEGNS-IRFGLQGIRNMGKISIR-LIEERDTRGDFRNFQDCAVRMAKYQKVDRR 949 Query: 878 VLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQS 937 VLE LI SGA D R + + L L A Q K GQ +F + ++I + Sbjct: 950 VLEALIFSGAVDSFEGTRNSKLMMLDALLLVASQERKDYQSGQLSIFDIPLLSQDKIREV 1009 Query: 938 YA-SCQPWPEQVVLDGERETLGLYLTGHPINQY--LKEIERYVGGVRLKDMHPTERG--- 991 + + L+ E+E G Y++ HP++ Y L E + L+D + Sbjct: 1010 LTPTLTEFNIDFKLEKEKEFAGFYISAHPLDSYETLLAEEEFCEIGFLQDTDEKDEADRV 1069 Query: 992 ----KVITAAGLVVAARVMVTKRGNR-IGICTLDDRSGRLEVMLFTDALDKYQQLLEKDR 1046 K I AG++ TK+ N+ + + L+D +G ++ + F++ L++ LL + Sbjct: 1070 RSYKKSIRVAGIITEIETYYTKKDNKPLNVFKLEDTTGEIKCVAFSNVLEQSAGLLHEGS 1129 Query: 1047 ILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDD--QLLNRLRQS 1104 I+ V G+ DD G ++ + V+DI + + L R +++ + ++R Sbjct: 1130 IIAVEGKFEEDD--RGTQIMVKRVIDIHDVGNDGNPKEIVLLGSRNVNNARKQFVKVRDY 1187 Query: 1105 LEPHRS--GTIPVHLYYQRADARARLRFGATWRVSPSD---RLLNDLRGLIGSEQVELEF 1159 L+ + S T+PV+ + G T++V+ + ++ ++ ++G + + + Sbjct: 1188 LKEYESEDSTVPVYFIFG----------GNTYKVNFTHFNLTMITQMQEIVGKQNCRVNY 1237 >UniRef50_C8W788 DNA polymerase III, alpha subunit n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8W788_ATOPD Length = 1278 Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust. Identities = 441/1294 (34%), Positives = 656/1294 (50%), Gaps = 174/1294 (13%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPAL-----------------------AIT 42 FVHL HSD+S++DG ++ +V KA GMPAL A+ Sbjct: 3 FVHLHNHSDFSILDGASRVPDMVSKAVEFGMPALALTDHGYLFGIPDFDLACRKYNEALK 62 Query: 43 DFTNLCGLVKFYGAG-------------------HGAG---------------------- 61 DF C V+ + G H Sbjct: 63 DFGQWCHDVECFEKGWDLEEPPADAPDAQEHDRVHAQWASDVQIWNQTHNIEAVKANKPS 122 Query: 62 --IKPIVGADFNVQCDLLGDELT-----HLTVLAANNTGYQNLTLLISKAYQRGYGAAGP 114 IKPI G + D ++ T HL +LA N TGY NL ++S+A + P Sbjct: 123 PLIKPIFGCEAYFILDDCIEKGTKQVRYHLILLAKNETGYVNLMKMMSEAGSKEMFYYKP 182 Query: 115 IIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTG 174 + L +EG+I S G + R L G + Y++ F D ++LE+ G Sbjct: 183 RTTLEMLKRYHEGIICTSACVSGIIPRMLFEGRPEEAERWAKIYQDIFGDDFYLEIQDHG 242 Query: 175 RPD-------EESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDD 227 D + + V++ G+ VVATND ++ D +I I G +DD Sbjct: 243 LSDPSWGGYTDRTLAERIVKMGHDLGIKVVATNDNHYLTKEDASVQDIASCIGSGARVDD 302 Query: 228 PKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMS 287 R R + Y++SE+EM ++F+ PEA+ NT+E+A +CN + +LP+FP D++ Sbjct: 303 ENRKRMTGSEFYLKSEQEMRQIFSWCPEAIENTIEVANKCNYELDWTHMYLPKFP--DLA 360 Query: 288 TEDYLVKRAKEGLEERLAFLFPDEEERLK-RRPEYDERLETELQVINQMGFPGYFLIVME 346 + +R ++ E LA + D+ + + +R E E +I + GF YFLIV E Sbjct: 361 EGETSEERFRKECELGLARRYGDDWQNVVINEINVKDRFEYEYDIICKKGFADYFLIVQE 420 Query: 347 FIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 406 +++W+K+NG+ VGPGRGS AG++VAYA+ IT DPLE L+FERFL+P+R MPD D+DF Sbjct: 421 YVRWAKENGIGVGPGRGSAAGAIVAYAMDITSFDPLENGLMFERFLSPQRSEMPDIDMDF 480 Query: 407 CMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPD 466 E+R +V+EHV +YG + VS +IT+ T+ AK I D RVLG+P R+SK+IP D Sbjct: 481 DDERRLEVVEHVRQIYGSERVSHVITYSTIKAKQAINDACRVLGYPVYMGQRLSKMIPGD 540 Query: 467 PG----MTLAKAFEAE-------PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGV 515 P L KA E + E YE D + + +ID A +EG+ R G HA V Sbjct: 541 PNAHLKFVLHKAQEGQKGADQYSADFEEAYENDPDARRIIDAALSIEGLHRGEGVHACAV 600 Query: 516 VIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKR 575 +IAPT + D P D +G +TQ++ V GL+K DFLGLRTLT+I+ A++ + Sbjct: 601 LIAPTPVNDHVPTKVDTKGGVEITQYEGHSVADMGLLKMDFLGLRTLTVISRAIKNVKDS 660 Query: 576 RAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALV 635 + +D+ +IP D + + +L+ T VFQ+ES GM IK ++P ++ ++AL+ Sbjct: 661 YGID----IDVDSIPFTDPEIYRLLREGRTAGVFQVESAGMTATIKGMRPTEYKHIVALI 716 Query: 636 ALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQ 695 AL+RPGPL +GMV ++I+R +GREE+ D + L +LE TYG ++YQEQVMQI+ Sbjct: 717 ALYRPGPLNAGMVTSYINRMNGREEVKDYDPR-----LHDILEETYGTMVYQEQVMQISM 771 Query: 696 VLSGYTLGGADMLRRAMGKKKPEEMAK------------QRSVFAEGAEKNGINAELAMK 743 +SG+T G +D +R+A+ KKK + M + + + GA +NG + +A Sbjct: 772 KMSGFTAGESDKVRKAVAKKKIKLMQEVVQHWDDGTDETMEAHWKNGAVRNGFDRSVAES 831 Query: 744 IFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDE 803 I+D V +FA Y FNKSHSA YA++ QT W+KAHYP EFMAAV+T+ M T+K+V V Sbjct: 832 IWDDVLEFASYAFNKSHSAGYAILVMQTAWIKAHYPHEFMAAVLTSYMGKTDKIVHYVSA 891 Query: 804 CWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELF 863 C G+KILPPDIN F +G I +G I+GVG G EAI+ R KGG F + Sbjct: 892 CRHEGIKILPPDINESGKDFTATKEG-IRFGFAGIRGVGAGVGEAIMLERQKGGPFANIH 950 Query: 864 DLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM-----NSLGDALKAADQHAKAEAI 918 D R D + R V+E LI +GAFD G R +M N+ + + AA + K +A+ Sbjct: 951 DFVDRMDASQAKRNVVEALIKAGAFDSTGYTRMQMMSFVDKNNPQNIIDAATKRQKDKAV 1010 Query: 919 GQADMFGVLAE-----------EPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPIN 967 GQ MF + AE EP+ +E W + L E E LG+Y++ HP+ Sbjct: 1011 GQFSMFDMFAEVEGSGFSDIVPEPDGVE--------WDRRFKLTKEYEVLGIYVSDHPLR 1062 Query: 968 QY-----------LKEIERYVGGVRLKDMHPTER-----GKVITAAGLVVAARVMVTKRG 1011 Y L EIE V V+L + +++ GK I AG+V TK G Sbjct: 1063 PYEYALAKSRDYALAEIEENV-EVQLPNGAMSQQFKVPEGKPIRFAGMVTNVMKRTTKNG 1121 Query: 1012 NRIGICTLDDRSGRLEVMLFTDALDKYQQLL-----------EKDRILIVSGQVSFDDFS 1060 + + I TL+D G + +++F K +LL + D + V G++ D Sbjct: 1122 DPMAIVTLEDMEGSVTIVMFPKLYKKAARLLAGDVDPETGESQSDIFISVLGKLERSD-- 1179 Query: 1061 GGLKMTAREVMDID-EAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRS-GTIPVHLY 1118 G ++ A+EV I+ + + L I + Q++ Q++ L Q + I + + Sbjct: 1180 RGDQVIAQEVSPIELNSANNTPKTLVIHMPASQLERQVIETLGQIFSRYPGMDCIEIRVE 1239 Query: 1119 YQRADARARLRFGATWRV-SPSDRLLNDLRGLIG 1151 R D +R R+ S LL +L+ LIG Sbjct: 1240 TDRGDV---MRMEIPTRIDGRSMVLLTELKDLIG 1270 >UniRef50_A6LHM2 DNA polymerase III alpha subunit n=46 Tax=Bacteroidales RepID=A6LHM2_PARD8 Length = 1267 Score = 641 bits (1654), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/1277 (32%), Positives = 666/1277 (52%), Gaps = 154/1277 (12%) Query: 3 EPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGA------ 56 EP F+HL VH+ YS++DG A L+ KA GM A+A+TD + G+ +F+ Sbjct: 2 EP-FIHLHVHTQYSLLDGQASIDALIDKAYKDGMRAIAVTDHGVMFGIKEFFNKVSKKNS 60 Query: 57 ---------------------------------------GHGAGIKPIVGADFNVQCDLL 77 + KPI+G + + Sbjct: 61 KPLGIIKDSEKELKPLLAKDAPTDEEQQRITELQKQIAEAKASIFKPIIGCECYCARNGR 120 Query: 78 GDELT--------HLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEGLI 129 +L HL VLA N GY+NL ++S ++ G+ P ID++ L + +E LI Sbjct: 121 HSKLASQDDRSGWHLIVLAKNKNGYKNLIKMVSLSWTEGF-YGRPRIDKELLEKYHEDLI 179 Query: 130 LLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR----------TGRPDEE 179 + S G++ + ++ G +E + +++ F + Y+LE+ R T P ++ Sbjct: 180 ICSACLGGEIPQHIMHGRIDKAEESIKWFKNLFGEDYYLEMQRHETHDPNADCTIFPHQQ 239 Query: 180 SYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQY 239 +ELA + ++ATNDV F+++ D +AH+ + + G LDDPKR R YS Q++ Sbjct: 240 EVNKVLIELAHKHNIKLIATNDVHFVNADDAEAHDRLICLSTGKDLDDPKRMR-YSKQEW 298 Query: 240 MRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF--PTGDMSTEDYLVKRAK 297 M++ EM +FADIPEAL+NT+EIA + +P F P + E Y K + Sbjct: 299 MKTTAEMNTIFADIPEALSNTLEIADKIEFYSIDSGPIMPTFAIPEEFGTEESYRQKLTE 358 Query: 298 EGLEERLA------FLFPDEE--ERLKRRPEYD--------------------------- 322 L E + +EE ++K+ YD Sbjct: 359 HDLFEEFTRDENGNVVLSEEEAHSKIKKLGGYDKLYRIKLEADYLAKLTYDGAKELYGDP 418 Query: 323 ------ERLETELQVINQMGFPGYFLIVMEFIQWSKDN-GVPVGPGRGSGAGSLVAYALK 375 ERL EL ++ MGFPGYFLIV +FI+ +++ GV VGPGRGS AGS VAY L Sbjct: 419 LNDEVKERLNFELHIMKTMGFPGYFLIVQDFIRAAREELGVSVGPGRGSAAGSAVAYCLG 478 Query: 376 ITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGT 435 IT +DP+++DLLFERFLNP+R+S+PD D DF + R +V+ V + YG + V+ IIT+GT Sbjct: 479 ITKIDPIKYDLLFERFLNPDRISLPDIDTDFDDDGRGEVLRWVTEKYGAERVAHIITYGT 538 Query: 436 MAAKAVIRDVGRVLGHPYGFVDRISKLIPPD-PGMTLAKAFEAEPQLPEIYEA----DEE 490 MA K+ I+DV RV P +R++KL+P P M K +A +PE+ EA D Sbjct: 539 MATKSAIKDVARVQKLPLSESNRLAKLVPDKIPDMKKFKLGDAIKYVPELKEAANGNDPL 598 Query: 491 VKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYC----DEEGKHPVTQFDKSDV 546 + + A+ LEG RN G HA GV+I I+D P+ D + VTQ++ S + Sbjct: 599 ARDTLKYAQMLEGNVRNTGVHACGVIIGRYDISDVVPVSTAKDKDTGEEMLVTQYEGSVI 658 Query: 547 EYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETT 606 E GL+K DFLGL+TL+II A+E + + LDI I L+D K++ + +TT Sbjct: 659 EETGLIKMDFLGLKTLSIIKEAIENVKLTTGHD----LDIDHISLEDPKTYKLYCDGKTT 714 Query: 607 AVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDV 666 FQ ES GM+ +K LQP FED+IA+ AL+RPGP+ + +FI RK G+EEI Y D+ Sbjct: 715 GTFQFESAGMQKYLKELQPSKFEDLIAMNALYRPGPMD--YIPSFIARKQGKEEIKY-DI 771 Query: 667 QWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSV 726 LK TYGI +YQEQVM ++++L+ +T G +D LR+AMGKK E+M +S Sbjct: 772 PVMERYLKD----TYGITVYQEQVMLLSRLLANFTRGESDALRKAMGKKLIEKMNHLKSK 827 Query: 727 FAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAV 786 F G + NG E KI+ EKFA Y FNKSH+ Y+ V+YQT +LKA++P+E+MAAV Sbjct: 828 FMAGGQANGYKEETLNKIWSDWEKFASYAFNKSHATCYSWVAYQTAYLKANFPSEYMAAV 887 Query: 787 MTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPI 846 ++ + N + +DEC MG+++L PD+N + F V+ + I +G+GA+KGVGE + Sbjct: 888 LSRSLSNITDITKFMDECKAMGIQVLGPDVNESILKFSVDKNKNIRFGLGAVKGVGESAV 947 Query: 847 EAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDA- 905 + IIE R K G ++ +FD R + N++ +E + ++GAFD G R G Sbjct: 948 QNIIEERKKNGPYKSIFDFVERVNLTACNKKNIESMALAGAFDNFGIQREQFFTDSGKGE 1007 Query: 906 ------LKAADQHAKAEAIGQADMFG---VLAEEPEQIEQSYASCQPWPEQVVLDGERET 956 ++ +++ ++ +FG ++A +I Q C+ W + L+ E+E Sbjct: 1008 LFLDTLVRYGNKYQMDKSTAVNSLFGGDALIAIAKPEIPQ----CERWSDLERLNKEKEL 1063 Query: 957 LGLYLTGHPINQYLKEIERYVGGVRLKDMHPTE--RGKVITAAGLVVAARVMVTKRGNRI 1014 +G+YL+ HP+++Y + I +YV + +++ E +G+ + G+V R +TK G Sbjct: 1064 VGIYLSAHPLDEY-RIILKYVCNTGMVELNERETLQGREVLLGGIVTGFREGMTKNGKPY 1122 Query: 1015 GICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFS-GGLKMTAREVMDI 1073 GI ++D +G E+ LF +Y + + L+++ +V + L V + Sbjct: 1123 GILKIEDFTGSGEIPLFGQDYIEYSKYGKIGMYLLITARVEPSRWDPNKLDFKIGTVNLL 1182 Query: 1074 DEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLR---F 1130 + ++K ++I++ +D+ +N L ++ + ++ LY++ D + F Sbjct: 1183 QDEKDKLIEKISITVPIHDLDEPTINELSVLIKNNPGHSL---LYFKVVDGEHNISLNLF 1239 Query: 1131 GATWRVSPSDRLLNDLR 1147 R++ + L++ L+ Sbjct: 1240 SQNIRLNVTRELVDFLQ 1256 >UniRef50_C1CZH7 Putative DNA-directed DNA polymerase (DNA polymerase III, alpha subunit) n=2 Tax=Bacteria RepID=C1CZH7_DEIDV Length = 1341 Score = 639 bits (1647), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/811 (43%), Positives = 513/811 (63%), Gaps = 35/811 (4%) Query: 324 RLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLE 383 R E EL VIN MGFP YFLIV ++I W+KD + VGPGRGSGAGSLVAYA++IT+LDPLE Sbjct: 483 RAEYELSVINNMGFPDYFLIVADYINWAKDQDISVGPGRGSGAGSLVAYAMRITNLDPLE 542 Query: 384 FDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIR 443 F LLFERFLNP+R+SMPDFD+DF +R +VI +V D YG D V+QI TFGTMA+KA ++ Sbjct: 543 FALLFERFLNPDRISMPDFDIDFNDARRSEVIAYVQDKYGEDKVAQIATFGTMASKACLK 602 Query: 444 DVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAEPQLPEIYEADEEVKALIDMARKL 501 DV RV+G Y VD++SKLIP G +L +A EA P + ++ D ++ + A+KL Sbjct: 603 DVARVMGLEYAKVDKVSKLIPIKFGKSYSLEQAREAVPDIAQMLAEDGQLLEAYEFAQKL 662 Query: 502 EGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRT 561 EG+TR+A HA GVVI T++TD P+ D G+ V Q+D VE GL+K DFLGLRT Sbjct: 663 EGLTRHASVHAAGVVIGKTQLTDLVPVMRDTSGEGMVCQYDMKAVEDIGLIKMDFLGLRT 722 Query: 562 LTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIK 621 L+ ++ A ++ + R +D AIP DD ++++++ R +T VFQLE G+ D + Sbjct: 723 LSFLDEARRIMRESRGIE----IDFDAIPFDDARTYELMSRGDTKGVFQLEGAGIADASR 778 Query: 622 RLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISY--PDVQWQHESLKPVLEP 679 RL+P D+IAL AL+RPGP+++ + ++ R HG EE+ Y + L+ +L Sbjct: 779 RLKPRRLADIIALSALYRPGPMEN--IPTYVRRHHGLEEVDYVRDGFPTSAKYLEKILAE 836 Query: 680 TYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAE 739 TYGI +YQEQ+MQIA ++G++LGGAD+LRRAMGKK EEM +QR +F EGA NG+ E Sbjct: 837 TYGIPVYQEQIMQIASEVAGFSLGGADLLRRAMGKKDAEEMKRQRQIFVEGAGNNGVPKE 896 Query: 740 LAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVG 799 A K+FDL++ FA YGFNKSHSAAY +++YQT WLKA+YP EFMAA++T + +++KV Sbjct: 897 EANKLFDLLDAFANYGFNKSHSAAYGVITYQTAWLKANYPVEFMAALLTVERRDSDKVAE 956 Query: 800 LVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYF 859 V + +M + +LPPDIN F V + EI++G+ AIKG+GE ++ I+E R + G + Sbjct: 957 YVSDARKMDVHVLPPDINRSAPDFAVEGE-EILFGLYAIKGLGEAAVQRILEERQRAGRY 1015 Query: 860 RELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALK----AADQHAKA 915 + L D C+R K NR+ +E LI SGAFD+ G R L++SL DAL+ AD +AKA Sbjct: 1016 KSLADFCSRLGNKVCNRKAMESLIKSGAFDQFG-ERNQLLHSLEDALEDAASTADINAKA 1074 Query: 916 EAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIER 975 A G + MFG+ EE ++ + P+ + L E+E LGLY++GHP+ Q+ E R Sbjct: 1075 -ASGMSMMFGM--EEVKKERPLRSGIPPFTDLERLSIEKEALGLYISGHPLEQH--EGLR 1129 Query: 976 YVGGVRLKDMH---------PTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRL 1026 R+ D+ P +R K + AG++ TK G + L D SG+ Sbjct: 1130 EAASCRISDLDTWFTQQNVAPGKRLKAVL-AGMIEGVVKKPTKSGGMMARFILADESGQT 1188 Query: 1027 EVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAI 1086 E++ F+ A D+ Q+ L D +V ++ +D GGL+ A EV+ +++ E + + + Sbjct: 1189 ELVAFSRAYDRIQEKLVNDTPALVIVELESED--GGLRAIAEEVVSVEQLAE-VPKVMYV 1245 Query: 1087 SLTDRQIDDQLLNRLRQSLEPHRSGTIPVHL 1117 ++ + + L+ H +G++P +L Sbjct: 1246 TIDLENASPDAVGEFQSILDEH-AGSMPTYL 1275 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 103/302 (34%), Positives = 151/302 (50%), Gaps = 28/302 (9%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALG----MPALAITDFTNLCGLVKFYGAGHGA 60 RF HL H+ YS++DG AK L+K A + PALA+TD N+ G V FY A Sbjct: 33 RFAHLHQHTQYSLLDGAAKLKDLLKWAKEVTPEGCTPALAMTDHGNMHGAVHFYNYAQAA 92 Query: 61 GIKPIVGADFNV-----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109 G+KPI+G + V + + HLT+LA + GYQNL L S+ Y GY Sbjct: 93 GVKPIIGYEAYVVPGQGTRRDRTRAQDGEKGIFHLTLLARDFEGYQNLCRLSSRGYTEGY 152 Query: 110 GAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLE 169 P ID + L E ++G+I SG +V + LL+G + + +Y E F + Y++E Sbjct: 153 -YYKPRIDHELLQEHHKGVIAFSGCLGSEVQQLLLQGREEDAKKRLLWYRELFGENYYIE 211 Query: 170 LIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPK 229 + G P+++ A+ G+ +VATND ++ SD AHE +AI TL D Sbjct: 212 IQDHGLPEQKRNNPILRAWAQELGIGMVATNDGHYVKKSDATAHETLLAIQTKATLADEN 271 Query: 230 RPRNYSPQQYMRSEEEMCELFADIP------EALANTVEIAKRCNVTVRLGE---YFLPQ 280 R + + Y+++ EEM A +P E NT IA CNV + +G+ Y +P Sbjct: 272 RFKFPCDEFYVKNLEEMQ---AALPVSDWGEEPFDNTSAIADLCNVDLPVGKKRVYQMPA 328 Query: 281 FP 282 P Sbjct: 329 LP 330 >UniRef50_C0YII7 DNA-directed DNA polymerase n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YII7_9FLAO Length = 1555 Score = 639 bits (1647), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/1074 (35%), Positives = 583/1074 (54%), Gaps = 104/1074 (9%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG--- 61 ++ + HS +S + + L+KKA+ PA+ + D N+ G KF A GA Sbjct: 247 KYFNFDNHSVFSTLTATSSINDLIKKASDENFPAVGMVDLGNMMGAFKFVSAVEGANADR 306 Query: 62 ------------------------------IKPIVGADFNV-----QCDLLGDE---LTH 83 + P+VG +F + Q D+ T Sbjct: 307 AKKHKEYLAKKQEAEENGTEFNEEEPVSEPLIPVVGCEFYISDRYEQKQFTKDDPDRRTQ 366 Query: 84 LTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSL 143 + +LA + GY+NL L S + +G+ P + R+ + + EG+I L+ G MGD+ ++ Sbjct: 367 VVLLAKDFNGYKNLAKLSSIGFLKGFYFGVPRVSRELIAQYKEGVIALTSGIMGDIPDAI 426 Query: 144 LRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVR 203 L +E ++++ F D +++++ P+EE + LA+ + ++A N+ Sbjct: 427 LNTGEQKGEELFKWWKDTFEDDFYVQIQNHKLPEEEHLNEVLLYLADKYNVKILAQNETF 486 Query: 204 FIDSSDFDAHEIRVAIHDGFTLDDP------KRPRNYSPQQYMRSEEEMCELFADIPEAL 257 + + D + +I I DG L P KR + + Y++S +E+ E F P+A Sbjct: 487 YTNKDDANIQDIVSCIKDGEKLTTPIGKGFGKRRGLATGEYYIKSSDEIKEAFLAYPDAF 546 Query: 258 ANTVEIAKRCNVTVRLGEYFLPQF--PTGDMSTED-----------YLVKRAKEGLEERL 304 E + + LP+F P + ED YL EG + R Sbjct: 547 DAYEEFTAKFKPYTLKRDVLLPKFDIPEEFIHAEDEVDGGKRGEMAYLTHLTYEGAKNRY 606 Query: 305 AFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGS 364 EE + E ERL+ EL+VI G+PGYFLIV +F ++ GV VGPGRGS Sbjct: 607 G------EEGIT--DEIKERLDFELEVIANTGYPGYFLIVQDFCNEARKMGVWVGPGRGS 658 Query: 365 GAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGR 424 AGS VAY + IT++DP+++DLLFERFLNPERVSMPD D+DF E RD+VI+ V + YG+ Sbjct: 659 AAGSAVAYCIGITNVDPIKYDLLFERFLNPERVSMPDIDIDFDDEGRDRVIKWVIEKYGQ 718 Query: 425 DAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQL-PE 483 V+QIIT+ + K+ I+D GRVL P + I+KLIP PGM +AKA +L PE Sbjct: 719 SQVAQIITYSVLGGKSAIKDAGRVLDVPIPDTNNIAKLIPSTPGMNIAKALAKYDKLKPE 778 Query: 484 -----------IYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPL-YCD 531 + D+ ++ A+K+EG RN G HA GV+I P +++ P+ Sbjct: 779 EQMLVDEMRYVLESPDDSRHGVLASAKKMEGCIRNTGIHACGVIITPEDVSNLVPVTIAA 838 Query: 532 EEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPL 591 ++ V+QFD S E AGL+K DFLGLRTLTII AL+++ R + +P L IPL Sbjct: 839 KDADILVSQFDNSVAESAGLLKMDFLGLRTLTIIKDALKLVKARHGVDIDPDL----IPL 894 Query: 592 DDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNF 651 DD K++ + + T +FQ ES GM+ ++ L+P F D+IA+ AL+RPGP++ + NF Sbjct: 895 DDAKTYQLFKEGRTVGIFQYESPGMQKYMRELKPTVFADLIAMNALYRPGPIK--YIPNF 952 Query: 652 IDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRA 711 I+RKHG EEI Y D+ E LK TYGI +YQEQVM ++Q L+ +T G AD LR+A Sbjct: 953 INRKHGIEEIVY-DLPETEEYLKE----TYGITVYQEQVMLLSQKLANFTKGEADTLRKA 1007 Query: 712 MGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQT 771 MGKK+ + + K F EG KN +N E KI++ + FA Y FNKSHS YA ++YQT Sbjct: 1008 MGKKQIDVLNKMYPKFIEGGRKNNLNEERLEKIWNDWKAFAEYAFNKSHSTCYAFIAYQT 1067 Query: 772 LWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEI 831 +LKA+YPAE+MA+VM+ +++NT+ + +++C MG+ +L PD+N Y F VN+ G+I Sbjct: 1068 AYLKANYPAEYMASVMSNNINNTDSITMFMEDCKSMGVDVLGPDVNESQYKFSVNEKGQI 1127 Query: 832 VYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRL 891 +G+GAIKG+GEGP EAI R + G F+ ++D R ++N+RV E L+++GAFD L Sbjct: 1128 RFGLGAIKGIGEGPSEAITRER-ENGRFKNIYDFFERILPSQMNKRVAESLVLAGAFDEL 1186 Query: 892 GP-HRAALMN-------SLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQ-SYASCQ 942 HR + +L ++ +++ + +F AEE QIEQ A C Sbjct: 1187 DSFHRGQYFDIDMAGKTNLERLIRYGQSFQESKNEMEHSLFADFAEEV-QIEQPKLAPCP 1245 Query: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKD-MHPTERGKVIT 995 WP L+ E+E +G YL+ HP++++ + + G + K + E KV+T Sbjct: 1246 EWPNMHKLNKEKEIIGFYLSAHPLDEFKYQFQFMQGQLSKKAVLEKNEEEKVVT 1299 >UniRef50_A4IRQ9 DNA polymerase III alpha subunit n=5 Tax=Geobacillus RepID=A4IRQ9_GEOTN Length = 1095 Score = 638 bits (1646), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/1158 (36%), Positives = 628/1158 (54%), Gaps = 72/1158 (6%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL V S YS+ A LV KA LG ALA+TD L G + FY G++PI Sbjct: 5 FVHLHVLSGYSLFQSTATVEALVAKAKQLGYRALALTDHQVLYGAIPFYRECQRHGLRPI 64 Query: 66 VGADFNVQCDLLGDELTH-LTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL 124 +G +V D GD L +LAAN GY++L + IS A Q + L L Sbjct: 65 IGMMADVVLD--GDSGAFPLVLLAANEEGYRHL-IEISTAVQMREEKH---VHEAALRRL 118 Query: 125 NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHA 184 + G+I ++ G G V L G A E + Y + F R ++ + R G Y A Sbjct: 119 SGGIIAITPGLNGRVESFLAAGEVAQAKETLLRYRQLFAGRLYIAIQR-GERTRAPYESA 177 Query: 185 AVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQ---YMR 241 + LAE G+PVVATN+VR+++ D A AI DG P + P++ Y+ Sbjct: 178 LLRLAEETGVPVVATNEVRYVEREDALAWRCLQAIGDGV-------PLAHIPEEDERYLA 230 Query: 242 SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTED-YLVKRAKEGL 300 + +EM FAD+PEAL N++ IA +C + + G + LP+FP D T D YL + ++GL Sbjct: 231 ALDEMARRFADLPEALENSMNIANQCELHIEFGHWRLPKFPVPDGETADSYLRRLCEQGL 290 Query: 301 EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360 R+ P + R Y ERLE EL +I M F YFLIV + + +++ G+ GP Sbjct: 291 ARRV----PSADAR------YRERLEHELHIIQTMRFSDYFLIVADVLAYARQRGILTGP 340 Query: 361 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420 GRGS AGSLVAYAL ITD+DP+E+ LLFERFLNPERVS+PD D+DF ++R++VI +V + Sbjct: 341 GRGSAAGSLVAYALSITDVDPIEYGLLFERFLNPERVSVPDIDLDFPDDRREEVIRYVVE 400 Query: 421 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQ 480 YGRD V+QIITFGT AKA +R+ +VLG +R+ L+P G+T+++ Sbjct: 401 TYGRDHVAQIITFGTFGAKAALRETAKVLGVSGREAERVMALLPNKQGVTISQWHRESAA 460 Query: 481 LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQ 540 A + + + +A+KLEG+ R+ HA GV+I+P + PL G+ P+TQ Sbjct: 461 FRRALRALPDGERWLTIAKKLEGLPRHTSIHAAGVIISPDPLMRHVPLQ-PSHGEWPLTQ 519 Query: 541 FDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDML 600 + +E GL+K DFLGLRTLT++ + +I ++ K P D+ A+PLDD+K++ +L Sbjct: 520 YAMGALEALGLLKIDFLGLRTLTLLGQMVRLIERQTGK----PFDVRALPLDDEKTYALL 575 Query: 601 QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE 660 +T+ VFQLES GMK ++ L+P E+++A+ AL+RPGP+ M+ +I RK G E Sbjct: 576 SAGDTSGVFQLESSGMKRVLAELRPATLEEIVAVNALYRPGPMN--MIPTYIRRKRGEEA 633 Query: 661 ISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM 720 ISY H L+P+L PTYG+++YQEQ+MQIA ++G++LG AD+LRRA+ KK+ + Sbjct: 634 ISY-----LHPDLEPILAPTYGVLIYQEQIMQIAARIAGFSLGKADVLRRAVAKKEKALL 688 Query: 721 AKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA 780 A+ R F G NG A +A +++ + +FA YGFN+SH+ +Y L+SY ++KAHYP Sbjct: 689 AEHREAFVAGCVANGYPAPMAEELYRQIVRFADYGFNRSHAVSYTLLSYALAYIKAHYPL 748 Query: 781 EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG 840 F A +++ + EK+V E R G+ +LPP +N Y F V + I G+ +K Sbjct: 749 CFYAVMLSNASGDREKMVLYSYEAARKGIALLPPSVNRSGYRFAVEGEA-IRAGLATVKH 807 Query: 841 VGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMN 900 VG + II+ R + G F + FD R K L R LE LI +GAFD LG R +L+ Sbjct: 808 VGSAA-KLIIDERKENGPFADFFDFAVRLLPKGLARSALEALISAGAFDELGEERGSLLA 866 Query: 901 SLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLY 960 S+ A+ +H + M L ++ YA P E+E LG Sbjct: 867 SIEIAI----EHVQL-------MRPYLEAGGLSLKPKYADAPPLSPAERRQREKELLGFA 915 Query: 961 LTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLD 1020 +T HP + + + V V ++H G + G + R TK G + T+ Sbjct: 916 VTPHP-AAVCRPLFQAVRAVPAAEVH----GSPVVVGGCIAELRKTRTKFGEEMAFITVS 970 Query: 1021 DRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKY 1080 D SG LE + F + LE+ ++++G V D G + V+ E Sbjct: 971 DESGELEAVAFPSVYARAAGELEEGNFVLLAGTV---DMRAGRRQL---VLRRAERLPTS 1024 Query: 1081 ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSD 1140 A + SL DR L+ L+ LE HR G+ PV+LY + R+ LR + V+ + Sbjct: 1025 ALYIHASLADR----SRLSALKLLLEQHR-GSTPVYLYDE--TKRSLLRLPERYGVALTA 1077 Query: 1141 RLLNDLRGLIGSEQVELE 1158 L+++L L G+ ++ ++ Sbjct: 1078 PLIDELIALFGARRLAVK 1095 >UniRef50_B2RGQ8 DNA polymerase III alpha subunit n=2 Tax=Porphyromonas gingivalis RepID=B2RGQ8_PORG3 Length = 1228 Score = 633 bits (1632), Expect = e-179, Method: Compositional matrix adjust. Identities = 393/1064 (36%), Positives = 592/1064 (55%), Gaps = 57/1064 (5%) Query: 83 HLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRS 142 HL +LA N GY+NL ++S ++ G P IDR+ L + +EG+I+ S G++ + Sbjct: 146 HLILLAKNLRGYKNLIKMVSYSWTEG-QYYRPRIDRELLQKYHEGIIVSSACLGGEIPQH 204 Query: 143 LLRGNSALVDECVAFYEEHFPDRYFLELIRTGR----------PDEESYLHAAVELAEAR 192 ++ G A +E + +++E F D Y+LE+ R P ++ +EL + Sbjct: 205 IMAGEIAKAEEAILWFKELFGDDYYLEVQRHETHNPLGNQDVFPQQQRVNRVILELGKKL 264 Query: 193 GLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFAD 252 G+ V+ATNDV F + D +AH+ + + G LDDP R R Y+ Q++M++ EM +F D Sbjct: 265 GVKVIATNDVHFCNEEDAEAHDRLICLSTGKDLDDPNRMR-YTKQEWMKTTAEMSAIFED 323 Query: 253 IPEALANTVEIAKRCNVTVRLGEYFLPQFPTGD--MSTEDYLVKRAKEGLEERLAFLFPD 310 +PE L+NT+EI + + +P FP +DYL EG + D Sbjct: 324 LPETLSNTLEILDKVEFYSIDNKALMPDFPIPPEYKDDDDYLRFLTYEGARRKYGEDLSD 383 Query: 311 EEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLV 370 E ER++ EL+ I MGFPGYFLIV +FI ++ GV VGPGRGS AGS V Sbjct: 384 E---------IKERIDFELETIKGMGFPGYFLIVQDFIAAARSMGVSVGPGRGSAAGSAV 434 Query: 371 AYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQI 430 AY L ITD+DP+++ LLFERFLNP+R+SMPD DVDF + R +++ V + YG++ V+ I Sbjct: 435 AYCLGITDIDPIKYHLLFERFLNPDRISMPDIDVDFDDDGRAEILRWVTEKYGKERVAHI 494 Query: 431 ITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPD-PG---MTLAKAFEAEPQLPEI-Y 485 IT+GTMA K+ I+DV RV P +R++KL+P PG + L KA E P+L + Sbjct: 495 ITYGTMATKSSIKDVARVQRLPLPESNRLAKLVPDKIPGEKKVNLKKAIEFVPELKQASL 554 Query: 486 EADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYC--DEEGKHP--VTQF 541 +D+ ++ + A+ LEG RN G HA G++I T I+D P+ D++ K VTQ+ Sbjct: 555 SSDKVMRDTLKYAQMLEGNVRNTGVHACGIIIGKTDISDVVPVSTAPDKDTKEELLVTQY 614 Query: 542 DKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQ 601 + S +E GL+K DFLGL+TL+II AL I +R + L+I IPLDD ++ + Sbjct: 615 EGSVIEQTGLIKMDFLGLKTLSIIKEALVNIKRRHGID----LNIDTIPLDDPLTYKLYS 670 Query: 602 RSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEI 661 T FQ ES GM+ ++ LQP FED+IA+ AL+RPGP+ + +FI RKHGRE I Sbjct: 671 DGRTIGTFQFESGGMQKYLRELQPSAFEDLIAMNALYRPGPMD--YIPSFIARKHGREPI 728 Query: 662 SYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMA 721 Y D+ E LK TYG+ +YQEQVM +++ L+G+T G +D LR+AMGKK E+M Sbjct: 729 DY-DLPEMEEYLKE----TYGVTVYQEQVMLLSRKLAGFTRGQSDELRKAMGKKLIEKMN 783 Query: 722 KQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAE 781 + F EG KNG E+ KI+ EKFA Y FNKSH+ Y+ V+YQT +LKA+YPAE Sbjct: 784 VLKVKFLEGGNKNGHPEEVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPAE 843 Query: 782 FMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGV 841 +MA ++ +++N ++ L+DEC M + +L PD+N F VN +G+I +G+ A+KGV Sbjct: 844 YMAGALSRNLNNITEITKLMDECKSMKIGVLVPDVNESEMKFSVNANGDIRFGLSAVKGV 903 Query: 842 GEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM-- 899 G G +E II R G ++++FD R + NR+ +E L ++GAFD R M Sbjct: 904 GSGAVEQIIAEREANGLYKDIFDFVERINLSACNRKTMESLALAGAFDSFALSREEYMAP 963 Query: 900 ------NSLGDALKAADQHAKAEAIGQAD-MFGVLAEEPEQIEQSYAS-CQPWPEQVVLD 951 S AL + E Q++ +FG EE I + S +PW + L+ Sbjct: 964 PLTGREESYIQALMRYGSVVQEEKHSQSNSLFG--EEEDLMIPRPQPSPTEPWNDLERLN 1021 Query: 952 GERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTER-GKVITAAGLVVAARVMVTKR 1010 ERE +GLYL+ +P+ QY ++ Y P GK + AG+V A +++ Sbjct: 1022 KERELVGLYLSSNPMAQYQVILDHYCNTHAADLTDPDSLVGKNLVLAGIVTKAFQGISRS 1081 Query: 1011 GNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFS-GGLKMTARE 1069 N TL+D SG E+ LF A + ++ L++ V + G +++ Sbjct: 1082 NNPYSKITLEDLSGTGEIPLFGQAHVNFGNYCKEGLYLLIRASVQPHKWKEGEMELVVTS 1141 Query: 1070 VMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTI 1113 + + + + + + I L +ID++L+ L L + T+ Sbjct: 1142 IELLPQVADTLIKKMTILLPASKIDNELIEMLSDELTNNSGKTM 1185 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/67 (46%), Positives = 41/67 (61%), Gaps = 7/67 (10%) Query: 3 EPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFY------GA 56 EP FVHL VHS +S++DG A LV KA A GMP +A+TD + G+ +FY + Sbjct: 2 EP-FVHLHVHSQFSLLDGQAAINDLVDKAIADGMPGIALTDHGAMFGIKEFYNYVEKKNS 60 Query: 57 GHGAGIK 63 GH A +K Sbjct: 61 GHNATLK 67 >UniRef50_C2MCQ0 DNA polymerase III, alpha subunit family n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2MCQ0_9PORP Length = 1272 Score = 632 bits (1629), Expect = e-179, Method: Compositional matrix adjust. Identities = 377/991 (38%), Positives = 551/991 (55%), Gaps = 65/991 (6%) Query: 83 HLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRS 142 HL +LA N GY+NL ++S A++ G P ID+ L E +EG+I S G++ + Sbjct: 154 HLILLAKNLKGYRNLIKMVSIAWEHG-EYYKPRIDKKLLTEHHEGIIASSACLGGEIAQH 212 Query: 143 LLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPD----EESY------LHAAVELAEAR 192 +L G E +Y+E F + Y+LE++ D +E+Y +++ + Sbjct: 213 ILHGRLEEARETARWYQETFGEDYYLEIMLHPNSDPLGGQETYQKQQLVAQEVLKIGQEL 272 Query: 193 GLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFAD 252 G+ V+ATND F++ D +AH+ + + + DP R R Y+ Q++++S EEM LFAD Sbjct: 273 GIKVIATNDTHFLNEEDAEAHDHLICMTTNSPISDPNRMR-YTKQEWLKSPEEMTALFAD 331 Query: 253 IPEALANTVEIAKRCNVTVRLGEYFLPQF--PTGDMSTEDYLVKRAKEGLEERLAFLFPD 310 P+ L NT+E+ + +P F P G S +DYL EG ++R P Sbjct: 332 YPDVLENTLEVCDKVEYYSIDHAPLMPHFELPEGFASEDDYLRHLTYEGAKKRYGDPVP- 390 Query: 311 EEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLV 370 PE ER++ EL VI MGFPGYFL+V +FI ++ GV VGPGRGS AGS V Sbjct: 391 --------PEVQERIDMELGVIQNMGFPGYFLVVQDFIAAARKLGVRVGPGRGSAAGSAV 442 Query: 371 AYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQI 430 AY L IT ++P+++ LLFERFLNP+R+SMPD D+DF + R +V++ V + YGRD VS I Sbjct: 443 AYCLSITQIEPIKYGLLFERFLNPDRISMPDIDIDFDDKNRWRVLDWVTNKYGRDHVSNI 502 Query: 431 ITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP-----GMTLAKAFEAEPQLPEI- 484 IT TMA K I+ V RV P +R+ KLIP P + L + + E Sbjct: 503 ITLTTMATKGAIKGVARVEELPLDQANRLCKLIPDRPPEGVKHLNLEWMVQNNQEFREAS 562 Query: 485 YEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYC----DEEGKHPVTQ 540 +E++ I AR+LEG G HA GV+I+ ++D PL D + V Q Sbjct: 563 VSQNEQLANTIRYARQLEGTASTTGVHACGVIISGPPVSDVVPLSTAIDPDTNERKLVAQ 622 Query: 541 FDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDML 600 ++ +E GL+K DFLGL+TL+IIN ALE I + LDI IP+DD K+F++ Sbjct: 623 YEGKVIEPTGLIKMDFLGLQTLSIINDALENIKVSYGID----LDIDTIPVDDPKTFELY 678 Query: 601 QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE 660 + +T FQ ES GM+ +++L+P F+D++A+ AL+RPGP+ + + FI+RKHGR+E Sbjct: 679 SQGDTVGTFQFESPGMRKYLQQLEPTEFKDLVAMNALYRPGPMDN--IPTFIERKHGRQE 736 Query: 661 ISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM 720 I+Y ++P L+ TYGI +YQEQVM +++VL +T G +D LR+AMGKKK +EM Sbjct: 737 ITY-----DLPEMEPYLKDTYGITVYQEQVMILSRVLGDFTRGDSDSLRKAMGKKKEKEM 791 Query: 721 AKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA 780 AK R F E G E +I+D +KFA Y FNKSHS YA V+YQT +LKAHYPA Sbjct: 792 AKYRIKFVENGVTKGHPRETLERIYDGWQKFASYAFNKSHSVCYAWVAYQTAYLKAHYPA 851 Query: 781 EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG 840 +FMAA++T + + ++K+ ++E MGL++ PD+N F N DG I +G+G I Sbjct: 852 QFMAALLTCNQNKSDKLTKYLEEVQHMGLEVKGPDVNESFTAFSANKDGVIRFGLGGISH 911 Query: 841 VGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMN 900 VG EAII+ R + G +++++D RTD +RR LE LI+SGAFD G R Sbjct: 912 VGLSVAEAIIKERKEQGAYQDVYDFFQRTDLTNCSRRALEALILSGAFDSFGIDREVYFA 971 Query: 901 SLGDALKAADQHAKAEAIGQADM-FG-VLAEEPEQIEQSY----------------ASCQ 942 + + + + K E A M +G +L E Q++ S + Sbjct: 972 PIAKSGVSGLSYGKDETFLTALMQYGKILESERTQVQASLFGDSDPSVKLPKPIPPKDVE 1031 Query: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHP-TERGKV-ITAAGLV 1000 PW L E+ +G+YL+ HP++ Y IE Y+ D+ E G +T AGLV Sbjct: 1032 PWSNLERLTKEQSYIGMYLSAHPLDPYAFAIE-YLCNCPASDLAQFAELGLTQLTCAGLV 1090 Query: 1001 VAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 R ++K+ I ++D SG E+ LF Sbjct: 1091 TKVRQGISKKNEPYAIIQIEDASGSGEIPLF 1121 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 5/85 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 +V L VHS YS++DG+A +V KA A GMP +A+TD + G+ F + Sbjct: 18 YVPLHVHSHYSILDGMAPVEKIVDKAVACGMPGIALTDHGAMYGIKNFTNYANDK----- 72 Query: 66 VGADFNVQCDLLGDELTHLTVLAAN 90 + D Q LG ++ L AAN Sbjct: 73 INGDKLSQIKSLGKQIKELEADAAN 97 >UniRef50_C3JBN3 DNA polymerase III, alpha subunit family n=2 Tax=Bacteria RepID=C3JBN3_9PORP Length = 1251 Score = 629 bits (1623), Expect = e-178, Method: Compositional matrix adjust. Identities = 385/1027 (37%), Positives = 575/1027 (55%), Gaps = 76/1027 (7%) Query: 83 HLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRS 142 HL +LA N GY NL ++S ++ G P ID+D L + +EG+I++S G+V + Sbjct: 143 HLILLAKNKQGYLNLCKMVSASFTEG-EYYRPRIDKDLLEQYHEGVIVMSACLGGEVPQH 201 Query: 143 LLRGNSALVDECVAFYEEHFPDRYFLE--LIRTGRPD--EESYLH------AAVELAEAR 192 +L G+ +E V +++ F + Y+LE L +T P+ E+++ ++AE Sbjct: 202 ILGGHPERAEETVRWFKNIFGEDYYLEVQLHQTDDPNANRETFVQQLAVNEVIYDIAERT 261 Query: 193 GLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFAD 252 G+ VVATNDV F++ D AH++ + + LDDP+R R YS Q++++++EEM +FAD Sbjct: 262 GVKVVATNDVHFVNQEDATAHDMLICLGTKRDLDDPQRMR-YSQQEWLKTQEEMNAVFAD 320 Query: 253 IPEALANTVEIAKRCNVTVRLGEYFLPQFP--TGDMSTEDYLVKRAKEGLEERLAFLFPD 310 PE L+NT+EI + +P FP G + YL EG + R P+ Sbjct: 321 RPELLSNTLEILNKVEFYTIENPALMPDFPLPEGFDDADKYLQHLTYEGAKMRYGDPIPE 380 Query: 311 EEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLV 370 E ER++ EL I MGFPGYFLIV + IQ ++D GV VGPGRGS AGS V Sbjct: 381 E---------VKERIDFELNTIKSMGFPGYFLIVQDLIQAARDMGVCVGPGRGSAAGSAV 431 Query: 371 AYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQI 430 AY LKIT+LDPL++ LLFERFLNP+R+S+PD D+DF R ++++ + YG V+QI Sbjct: 432 AYCLKITNLDPLKYGLLFERFLNPDRISLPDIDIDFDDSGRAKILQWATEKYGHKNVAQI 491 Query: 431 ITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIP------------PDPG-------MTL 471 ITFG M AK+ I DV R+ P RI+KLIP PG +T+ Sbjct: 492 ITFGEMKAKSSIADVARLKHIPVEESRRITKLIPDKFSDSDMELIHKTPGYENAKGNVTI 551 Query: 472 AKAFEAEPQLPEI-YEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYC 530 + P+L ++ ++ +++ A+KLEG RN G HA GV+I I+D P+ Sbjct: 552 ELSTLVVPELKKLQVGSNTQIQDTFKYAQKLEGSIRNIGVHACGVIIGKYDISDVIPIST 611 Query: 531 --DEEG-KHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIA 587 DE G K +TQ++ +E GL+K DFLGL+TL+II LE + R K+ +DI Sbjct: 612 SFDENGEKVLITQYEGKVIESTGLIKMDFLGLKTLSIIREGLENVKHRFHKD----IDID 667 Query: 588 AIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGM 647 IPLDD+K+F + +FQ ES GM+ ++ LQPD FE +IA+ AL+RPGP++ Sbjct: 668 HIPLDDEKTFKLFCEGRMVGIFQFESAGMQKYLRELQPDRFELLIAMNALYRPGPMK--Y 725 Query: 648 VDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADM 707 + +I R+HGREEI Y DV K +LE T+G+ +YQEQVM +++ L+ +T G +D Sbjct: 726 IPQYIARRHGREEIIY-DVP----ETKEILEETFGVTVYQEQVMLLSRSLANFTRGQSDS 780 Query: 708 LRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALV 767 LR+AMGKKK EEM K ++ F +G +NG + E+ KI+ E FA Y FNKSH+A Y+ + Sbjct: 781 LRKAMGKKKIEEMEKLKADFLKGGVENGHSKEVLEKIWMDWEDFAKYAFNKSHAACYSWL 840 Query: 768 SYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVND 827 +YQT +LKAHYP+EFMA ++ ++ N ++ L+ EC MG+++L PD+N + F VN Sbjct: 841 AYQTAYLKAHYPSEFMAGNLSCNLSNAPEIAKLMKECKAMGIRLLSPDVNESMQKFSVNS 900 Query: 828 DGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGA 887 +G+I +G+ IKGV + I+ +IE R + G F ++D AR + +NR+ +E +SGA Sbjct: 901 NGDIRFGLSGIKGVNQTTIDKLIEDREQNGPFTSIYDFVARIPRQFINRKTMEAFALSGA 960 Query: 888 FDRLGPHRAAL----MNSLGDALKAA--------DQHAKAEAIGQADMFGVLAEEPEQIE 935 FD G R + +NS D+ A + + ++++G +FG +EE E Sbjct: 961 FDSFGIERESFFAPPVNSREDSFIATLLAYGRIVQEESSSQSMG---LFGE-SEELSIPE 1016 Query: 936 QSYASCQPWPEQVVLDGERETLGLYLTGHPINQY---LKEIERYVGGVRLKDMHPTERGK 992 +PW L E E +G+Y++ +P+ Y L ++ K + Sbjct: 1017 PEVPQAEPWNNLTKLSKEYELVGIYISSNPLEPYRLILDKLCTVKLDDLDKKDLEEFKDT 1076 Query: 993 VITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSG 1052 + AGLV +TK G TL+D SG E LF +Y+ L+ + LI Sbjct: 1077 RMVFAGLVTNVMEGLTKTNKPYGRFTLEDLSGSHEFALFGKQYLEYKHFLKTEIFLICHA 1136 Query: 1053 QVSFDDF 1059 V F Sbjct: 1137 SVKLWQF 1143 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 24/49 (48%), Positives = 33/49 (67%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFY 54 FVHL VHS +S++DG A + LVKKA GMP +A+TD + G+ F+ Sbjct: 4 FVHLHVHSQFSILDGQASVSALVKKAIGDGMPGIALTDHGVMFGIKTFF 52 >UniRef50_B7GGS6 DNA polymerase III, alpha subunit n=1 Tax=Anoxybacillus flavithermus WK1 RepID=B7GGS6_ANOFW Length = 1077 Score = 627 bits (1617), Expect = e-178, Method: Compositional matrix adjust. Identities = 400/1161 (34%), Positives = 627/1161 (54%), Gaps = 98/1161 (8%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F+HL+V S YS++ K LV +A L PA+A+TD L G++ FY A GIKPI Sbjct: 7 FIHLQVRSGYSLLSSTVKIEELVTRARELQFPAIALTDENVLYGVMPFYEACQAHGIKPI 66 Query: 66 VGADFNVQCDLLGDELTH---LTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLI 122 +G + DE H L +LA NN GY+ L + I+ A Q G ++D Sbjct: 67 IGMMATIM-----DEHGHPDQLVLLAKNNDGYRQL-VHIATAIQTNDGKGISLLD---FS 117 Query: 123 ELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRTGRPDEESY 181 LI ++ G G V + LL G + V Y + F +++ + R G ++E Sbjct: 118 HHTSELIGMTSGVYGRVEQHLLNGEIEQAEAIVQTYAKLFQRGDFYINVQRHGLQEQEHL 177 Query: 182 LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241 L E ++ +P+VATNDVR+I D A E +A+ G + DP RPR + + +++ Sbjct: 178 LSLLFEHSKRWDIPLVATNDVRYIYKEDTLAFECLLAMKHGKKMVDPNRPRLATNEYHLK 237 Query: 242 SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTED-YLVKRAKEGL 300 S EM LF++ EA+ TV IA+RC+VT +F+P++P T D YL E Sbjct: 238 SAHEMAALFSNGYEAVEETVRIAQRCHVTFESKRWFMPRYPVPSGKTADEYLQTWCWEQF 297 Query: 301 EERLAFLFPDEEERLKRRPE-YDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVG 359 +R FPD RP+ Y RL+ ELQ+I QM F YFLIV +F++++++ G+ G Sbjct: 298 TKR----FPD-------RPKAYVARLQYELQIIQQMNFSDYFLIVADFVRFARERGILTG 346 Query: 360 PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVA 419 PGRGS AGS+VAY L IT +DPL++ LLFERFLNP R+S+PD D+DF ++R++VI ++ Sbjct: 347 PGRGSAAGSIVAYILGITQVDPLQYGLLFERFLNPARLSLPDIDIDFPDDRREEVIRYIE 406 Query: 420 DMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEP 479 YG D V+QI+TFGT ++ IR+VGRV VD E E Sbjct: 407 QKYGTDHVAQIVTFGTFGMRSAIREVGRVFD-----VD------------------EREI 443 Query: 480 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 539 Q + + + +A+++EG+ ++ HA G+VI+P +TD PL + + VT Sbjct: 444 QQTLATGSFDRTRPWHYVAQRIEGLPKHTSVHAAGIVISPRPLTDIIPLQSGQTTTY-VT 502 Query: 540 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 599 Q+ +E GL+KFD L L+ LT+I ++ I +R L +P+DD+K++ + Sbjct: 503 QYAMDALERLGLLKFDLLALKNLTMIEQMIQSIEQRTGHR----LSFENMPIDDQKTYAL 558 Query: 600 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 659 L R +T VFQLES GMK +++ LQP FED++A+ ALFRPGP++ + +I RKHGRE Sbjct: 559 LSRGDTFGVFQLESEGMKRILRELQPTTFEDIVAVNALFRPGPMEQ--IPTYIARKHGRE 616 Query: 660 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 719 I Y H+ L+ +L+ TYG+I+YQEQ+M+IA+ ++ ++L AD+LRRA+ KK + Sbjct: 617 PIRY-----MHDDLQSILQSTYGVIVYQEQIMKIAEQMAKFSLAQADLLRRAISKKDVGQ 671 Query: 720 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 779 M K++ F EG +NG +A LA ++++L+ +FAGYGFN+SH+ AY+ ++Y ++KAHYP Sbjct: 672 MEKEKKHFIEGCIQNGYDAHLANELYELIVRFAGYGFNRSHAVAYSYIAYMLAYIKAHYP 731 Query: 780 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 839 +F AAV+T EK++ V E +++LPP I HF V+D+G I +G+ AIK Sbjct: 732 LDFYAAVLTNVSGQKEKMMQCVHELRSKKIRLLPPSIARSEGHFTVDDNG-IRFGLLAIK 790 Query: 840 GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 899 V ++ ++ R K F + FD +R + ++V+E LI SG FD RA L Sbjct: 791 QVNAAFVKQMVRERQKRP-FSDFFDFVSRLRMESSQKKVIEALIFSGCFDEFHIERATLY 849 Query: 900 NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 959 S+ A++ A+ L ++ Y +P L E++ L + Sbjct: 850 ASIDVAIEHAE----------------LMNFSLHVQPKYVHAEPLSLIDQLKYEKQWLNV 893 Query: 960 YLTGHPINQYLKEIERYVGGVRLKDM--HPTERGKVITAAGLVVAARVMVTKRGNRIGIC 1017 Y++ HP+ + + G R+ + GKVI V R TK+G + Sbjct: 894 YVSPHPVESFSHFYSMW-GAKRMYEWTKENVNHGKVIVYVEEVTRKR---TKKGEEMAFV 949 Query: 1018 TLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077 T+ D S + ++F + ++ LL++ IL + G++ + S G + ++V Sbjct: 950 TICDDSDEWQAVVFPTSYRRFHDLLQQGSILYMEGKI--EQRSSGWHLIVQQV------- 1000 Query: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVS 1137 + + I + ++ +L +L+ L HR G PV LYY+ R +++ + VS Sbjct: 1001 -RKPVCVYIKIDEQHASPVVLKQLKDVLTAHR-GHAPVILYYE--TERKKVQLSHEYAVS 1056 Query: 1138 PSDRLLNDLRGLIGSEQVELE 1158 P+D + L L+G V ++ Sbjct: 1057 PNDVCIRQLVTLLGDGNVAVK 1077 >UniRef50_Q9RX08 DNA polymerase III subunit alpha n=2 Tax=Deinococcus RepID=DPO3A_DEIRA Length = 1335 Score = 626 bits (1614), Expect = e-177, Method: Compositional matrix adjust. Identities = 350/794 (44%), Positives = 504/794 (63%), Gaps = 41/794 (5%) Query: 310 DEEERLKRRPEYD----ERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSG 365 D+EE + Y R E EL VIN MGFP YFLIV ++I W+KD+ + VGPGRGSG Sbjct: 455 DDEETTRSHHRYALKLLRRAEYELSVINNMGFPDYFLIVADYINWAKDHDISVGPGRGSG 514 Query: 366 AGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRD 425 AGSLVAYA++IT+LDPLEF+LLFERFLNP+R+SMPDFD+DF +R +VI +V + YG D Sbjct: 515 AGSLVAYAIRITNLDPLEFELLFERFLNPDRISMPDFDIDFNDARRTEVIGYVQEKYGTD 574 Query: 426 AVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAEPQLPE 483 V+QI TFGTMA+KA ++DV RV+G Y VD++SKLIP G +L +A EA P + + Sbjct: 575 KVAQIATFGTMASKACLKDVARVMGLEYAKVDKVSKLIPIKFGKSYSLEQAREAVPDIQQ 634 Query: 484 IYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDK 543 + D ++ + A+KLEG+TR+A HA GVVI ++T+ P+ D G+ V Q+D Sbjct: 635 MLAEDAQLLEAYEFAQKLEGLTRHASVHAAGVVIGREELTNLVPVMRDTSGEGQVCQYDM 694 Query: 544 SDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRS 603 VE GL+K DFLGLRTL+ ++ A ++ + E D IP DD+K+++++ R Sbjct: 695 KSVEDIGLIKMDFLGLRTLSFLDEAKRILRESGTDFEEKYGDFDHIPFDDEKTYELMSRG 754 Query: 604 ETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISY 663 +T VFQLE G+ D +RL+P D+IAL AL+RPGP+++ + ++ R HG EE+ Y Sbjct: 755 DTKGVFQLEGAGIADASRRLKPRRLADIIALSALYRPGPMEN--IPTYVRRHHGIEEVDY 812 Query: 664 -----PDV-QWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKP 717 P+ QW L+ +L+ TYGI +YQEQ+MQIA ++GY+LGGAD+LRRAMGKK Sbjct: 813 DKDGFPNSKQW----LEKILQETYGIPVYQEQIMQIASEVAGYSLGGADLLRRAMGKKDA 868 Query: 718 EEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAH 777 EEM +QR +F GA++ G+ + K+FD+++ FA YGFNKSHSAAY +++YQT WLKA+ Sbjct: 869 EEMKRQRQLFVVGAKEKGVPEDEGNKLFDMLDAFANYGFNKSHSAAYGVITYQTAWLKAN 928 Query: 778 YPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGA 837 YP +FMAA++T + +++KV V + +M L +LPPDIN F V + EI++G+ A Sbjct: 929 YPVQFMAALLTVERRDSDKVAEYVSDARKMDLHVLPPDINRSSSDFAVAGE-EILFGLYA 987 Query: 838 IKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAA 897 IKG+GE + I+E R K G F+ L D C+R K NR+ LE LI SGAFD G R Sbjct: 988 IKGLGESAVLRILEEREKAGAFKSLADFCSRLGNKVCNRKALESLIKSGAFDAFG-ERHQ 1046 Query: 898 LMNSLGDALK----AADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGE 953 L+ SL DAL+ A+ +A+A++ G + MFG+ EE ++ +S P+ + L E Sbjct: 1047 LIESLEDALEDAAGTAEINARAQS-GMSMMFGM--EEVKKERPLRSSIAPYSDLERLAIE 1103 Query: 954 RETLGLYLTGHPINQYLKEIERYVGGVRLKDMH---------PTERGKVITAAGLVVAAR 1004 +E LGLY++GHP+ Q+ E R R+ D+ P +R K + AG++ Sbjct: 1104 KEALGLYISGHPLEQH--EGLREAASCRVSDLDAWFALQNVAPGKRQKAVL-AGMIEGVV 1160 Query: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLK 1064 TK G + L D SG++E++ F+ A D+ + L D +V ++ +D GGL+ Sbjct: 1161 KKPTKSGGMMARFILADESGQMELVAFSRAYDRIEPKLVNDTPALVIVELEAED--GGLR 1218 Query: 1065 MTAREVMDIDEARE 1078 A E++ I++ E Sbjct: 1219 AIAEEIVSIEQLSE 1232 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 102/299 (34%), Positives = 150/299 (50%), Gaps = 22/299 (7%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALG----MPALAITDFTNLCGLVKFYGAGHGA 60 +F HL H+ YS++DG AK L+K A + PALA+TD N+ G V FY G Sbjct: 23 KFAHLHQHTQYSLLDGAAKLKDLLKWAKEVTPEGQTPALAMTDHGNMHGAVHFYNYAMGM 82 Query: 61 GIKPIVGAD------FNVQCDLLGDE-----LTHLTVLAANNTGYQNLTLLISKAYQRGY 109 +KPI+G + F + D + + HLT+LA + GYQNL L S+ Y GY Sbjct: 83 EVKPIIGYEAYVVPGFGTRRDRSRAQDGEKGIFHLTLLARDFEGYQNLCRLSSRGYTEGY 142 Query: 110 GAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLE 169 P ID + L E ++G+I SG +V + L++G + +Y E F D YF+E Sbjct: 143 -YYKPRIDHELLQEHHKGIIAFSGCLGSEVQQLLMQGREDDARARLLWYRELFGDNYFIE 201 Query: 170 LIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPK 229 + G P+++ A+ G+ +VATND ++ SD AHE +AI TL D Sbjct: 202 IQDHGLPEQKKNNPILKAWAQELGIGMVATNDGHYVKKSDATAHETLLAIQTKATLADEN 261 Query: 230 RPRNYSPQQYMRSEEEMCELFADI---PEALANTVEIAKRCNVTVRLG---EYFLPQFP 282 R + + Y+++ EEM E NT IA+ CNV + +G +Y +PQ P Sbjct: 262 RFKFPCDEFYVKNLEEMQRALPVSEWGEEPFDNTAHIAELCNVELPVGKKRQYQMPQLP 320 >UniRef50_Q8RNG1 Polymerase III subunit alpha (Fragment) n=17 Tax=Bacteria RepID=Q8RNG1_ECOLX Length = 302 Score = 625 bits (1613), Expect = e-177, Method: Compositional matrix adjust. Identities = 302/302 (100%), Positives = 302/302 (100%) Query: 392 LNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGH 451 LNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGH Sbjct: 1 LNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGH 60 Query: 452 PYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKH 511 PYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKH Sbjct: 61 PYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKH 120 Query: 512 AGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEM 571 AGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEM Sbjct: 121 AGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEM 180 Query: 572 INKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDM 631 INKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDM Sbjct: 181 INKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDM 240 Query: 632 IALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVM 691 IALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVM Sbjct: 241 IALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVM 300 Query: 692 QI 693 QI Sbjct: 301 QI 302 >UniRef50_C4F7F9 Putative uncharacterized protein n=2 Tax=Collinsella RepID=C4F7F9_9ACTN Length = 1272 Score = 625 bits (1613), Expect = e-177, Method: Compositional matrix adjust. Identities = 414/1162 (35%), Positives = 611/1162 (52%), Gaps = 89/1162 (7%) Query: 62 IKPIVGAD--FNVQCDLLGD---ELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPII 116 IKPI G + F L D EL H+ + A N GY NL +S+A +G+ P + Sbjct: 124 IKPIFGCEVYFTPDETLARDRKPELYHMVLFAQNEKGYVNLMQTVSEAAVQGF-YYKPRV 182 Query: 117 DRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLEL----- 170 D L EGLI S G + + + RG A E + + F P +++E+ Sbjct: 183 TLDNLRRHREGLIASSACIAGIIPKCIDRGEMATAIEWAETFRDTFEPGNFYIEIQEHGI 242 Query: 171 -IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPK 229 +G DEE +++AE G+ V+ATND ++ D ++ + I +DDP Sbjct: 243 TTDSGITDEE-LSRTLIQIAEQVGVKVIATNDFHYLTREDAPVQDVVMCIGTNSKIDDPN 301 Query: 230 RPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGD--MS 287 R R + YM++EEEM LF PEA NTVEIA++CNV + LP +P D + Sbjct: 302 RIRMEGSEFYMKTEEEMRALFPYCPEACDNTVEIAEKCNVELDWDSIILPNYPLLDPGET 361 Query: 288 TEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347 E + +EGL +R D + R + ER E E +VI GF YFLIV E+ Sbjct: 362 HESQFRRECEEGLAKRYG---DDWDGREIGGVDIRERFEFEYKVICDKGFAAYFLIVAEY 418 Query: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 ++W+K NG+ VGPGRGS AG+LVAYA+ IT DPL L+FERFL+PER MPD D+DF Sbjct: 419 VRWAKQNGIGVGPGRGSAAGALVAYAMDITTFDPLSNGLMFERFLSPERTEMPDIDMDFD 478 Query: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467 E+R +VIEHV +YG + V+ +IT+ T+ AK I D RVL +P R+SK++ DP Sbjct: 479 DERRLEVIEHVRQLYGPEKVTHVITYSTIKAKQAINDAARVLDYPVYMGQRLSKMVSADP 538 Query: 468 GMTLAKAFEAE--------PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAP 519 G+ L + E + P E Y+ DE+ + +ID A +EG+TR G HA V+I Sbjct: 539 GVKLKQVLEKQPGKEDLYSPDFVEAYQKDEDARRIIDTALSIEGLTRGEGVHACAVLICR 598 Query: 520 TKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKN 579 + + P D +G +TQ++ V GL+K DFLGLRTLT+I+ A I K + Sbjct: 599 DAVNEHVPTKLDTKGGVEITQYEGHTVADMGLLKMDFLGLRTLTVISKAKANIKKSFGID 658 Query: 580 GEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFR 639 +D+ AIP DD K F+++ T VFQ+ES GM IK ++P ++ ++AL+AL+R Sbjct: 659 ----IDVDAIPFDDPKIFELMSSGRTAGVFQVESAGMTATIKNMKPTEYKHVVALIALYR 714 Query: 640 PGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSG 699 PGPL +GMV ++I+R +G+E P V + L +L TYG ++YQEQVM I+ + G Sbjct: 715 PGPLGAGMVTSYINRMNGKE----PAVSYD-PRLDGILGETYGTMVYQEQVMLISVEMCG 769 Query: 700 YTLGGADM-LRRAMGKKKPEEMAKQRSVFAE------------GAEKNGINAELAMKIFD 746 ++ G +D +R+ + KKK + + Q +++ GAEKNG +A KI+D Sbjct: 770 FSKGESDSRIRKPVAKKKIKMLTDQVFKWSDGEDETIYDHWMNGAEKNGYKRSVAQKIWD 829 Query: 747 LVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWR 806 V +FA Y FNKSHSA YA++ QT WLKAHYP E+MAAV+T+ T+K+V V C Sbjct: 830 DVLEFASYAFNKSHSAGYAILVMQTAWLKAHYPNEYMAAVLTSYTGKTDKIVHYVSACRH 889 Query: 807 MGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLC 866 G+ +LPPDIN F +G + +G+ I+GVGEG +AIIE R KGG F+ L D Sbjct: 890 DGIAVLPPDINESGTEFTATPEG-VRFGLAGIRGVGEGVTQAIIEEREKGGPFKNLHDFV 948 Query: 867 ARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLG-----DALKAADQHAKAEAIGQA 921 R D+ + NRRV+E LI GAFD G R LM+ + + + AA + K A GQ Sbjct: 949 ERVDSSQANRRVIEALIKGGAFDSTGYPRRQLMHFVDRDNPENIIDAAVKRQKDRAAGQT 1008 Query: 922 ---DMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQY------LKE 972 D+FG + ++ Q W + L E+E LG+Y++ HP+ Y +E Sbjct: 1009 SLFDVFGDVEGSGFEVIVPEPDGQEWDRHMKLSFEKEVLGIYVSDHPLRPYEYALAKARE 1068 Query: 973 IERYVGGVRLKDMHPT--------ERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSG 1024 + M PT GK AG+V VTK G+ + I L+D G Sbjct: 1069 FTLSQIDTGFETMGPTGNAVNQEIPEGKPYWWAGMVSGVGKRVTKNGDPMAIVQLEDMEG 1128 Query: 1025 RLEVMLFTDALDKYQQLLE-----------KDRILIVSGQVSFDDFSGGLKMTAREVMDI 1073 V++F + + L D + V G++ D G ++ A+E+ + Sbjct: 1129 EATVVVFPKTYKQCEGYLYGEVDPETGAQLSDAFIRVKGKLERSD--RGDQIIAQEIEPL 1186 Query: 1074 DEARE-KYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGA 1132 + E + I + + + RL L + G V L+ ++AD + +R Sbjct: 1187 VLSEESNRPKVFEIMVPSSRFSQSNMARLATVLNTNPGGD-RVELFIEQADGQT-MRAEI 1244 Query: 1133 TWRVSP-SDRLLNDLRGLIGSE 1153 RV+ S L+ +++G++G++ Sbjct: 1245 PTRVNARSIPLIAEVKGIVGNK 1266 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 22/45 (48%), Positives = 30/45 (66%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGL 50 FVHL H+ YSM+DG + +V +A LGMPA+AITD + G+ Sbjct: 8 FVHLHNHTVYSMLDGATRIKDMVSRAVELGMPAVAITDHGYMYGV 52 >UniRef50_A8ZS53 DNA polymerase III, alpha subunit n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZS53_DESOH Length = 1217 Score = 625 bits (1611), Expect = e-177, Method: Compositional matrix adjust. Identities = 378/1073 (35%), Positives = 579/1073 (53%), Gaps = 53/1073 (4%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 +FVHL VH+ YS++DG+ + LV +A MPA+AITD + G+++FY AGIKP Sbjct: 7 QFVHLHVHTCYSLLDGIIRPDDLVARAVEYKMPAVAITDHGTMFGVIQFYMEAVRAGIKP 66 Query: 65 IVGADFNVQCDLLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIID 117 I+G + V + D+ L+HL +LA GY+NL L + A Q G+ P ID Sbjct: 67 IIGCECYVAPRTIADKTPADHAGLSHLVLLAETMEGYRNLCRLATIAQQDGF-FHKPRID 125 Query: 118 RDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDR-YFLELIRTGRP 176 + L + +GLI LS G++ + RG D Y + DR +FLE+ G P Sbjct: 126 KALLQKHAKGLIGLSACLKGEIPHLICRGRQDEADAAARQYCDMLGDRNFFLEVQNNGLP 185 Query: 177 DEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSP 236 ++E+ +A ++++ +P+V TND ++D D AHEI + + G T+ D R + + Sbjct: 186 EQETVNNALLDMSRRLSIPLVGTNDCHYLDPEDSRAHEIALCLQTGQTIHDTDRLKFDTN 245 Query: 237 QQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMST-EDYLVKR 295 Q +S EMC P A ANTV IA+RC V P T T D L Sbjct: 246 QLNFKSTGEMCVFLEPFPRAAANTVAIAERCQVAFDFSARHFPVLETPPGKTMADMLEDS 305 Query: 296 AKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNG 355 A GL++R + ++ + Y +RL EL VIN+MG PGYFLI+ +FI ++K+NG Sbjct: 306 AMAGLKKRWQHIC--KQSSHADKSVYQQRLAYELAVINEMGAPGYFLIIADFIAYAKNNG 363 Query: 356 VPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVI 415 + GPGRGS GSLV Y L IT +DP+E LLFERFLNPER MPD DVD C+ R+++ Sbjct: 364 ILTGPGRGSAPGSLVCYCLGITGVDPIEHGLLFERFLNPERNVMPDIDVDICINGREKIH 423 Query: 416 EHVADMYGRD----AVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL 471 +++ D Y RD + I T GTM ++A +R+VGR L P V++++KLIPP +L Sbjct: 424 QYLMDKYNRDDGEDYAACIATLGTMRSRAALREVGRALIMPLDDVNKVAKLIPPG-ARSL 482 Query: 472 AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCD 531 A + EP L + ++ E L+D+ RKLEG+ + +A G+V++ +T + PLY Sbjct: 483 DDALKKEPALRALIDSKPEFGELMDVIRKLEGLPFHILMNAAGIVLSDKPLTCYTPLY-- 540 Query: 532 EEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPL 591 +TQ D +E GL + D LG+R LT+I+ L++I + G D++ I Sbjct: 541 RFKGEMITQLDARSLETMGLARLDLLGMRDLTVISDTLQLIKNQ----GRQTPDLSRIDT 596 Query: 592 DDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNF 651 D + +L + +T VFQL S GMK+L+ + +P ++ L+AL+RPG L++GMV ++ Sbjct: 597 TDAATCQLLSKGDTFGVFQLASTGMKELLVKARPRSLSEVAVLIALYRPGLLENGMVADY 656 Query: 652 IDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRA 711 + RK G ++ +YP + L+P+L+ T G+ +YQEQ+MQ QVL+GYT G +D R+A Sbjct: 657 LGRKQGLKDTTYPTAK-----LEPILKETCGLPVYQEQIMQAVQVLAGYTPGQSDDFRKA 711 Query: 712 MGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQT 771 MGK+ E++A R F GA GI+ A+++F+ +E F YGFNK+HS AYA +++Q Sbjct: 712 MGKRIAEKIADHRQRFINGAAAKGIDKATALQLFEQLEYFGAYGFNKAHSIAYAFIAWQM 771 Query: 772 LWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEI 831 LKAH+PAEFMA + +++ L+ EC + +LPPD+N F V +G+I Sbjct: 772 ACLKAHFPAEFMAVWLDISFGCVDRIARLIGECRDSNIPVLPPDVNQSARQFTVV-NGQI 830 Query: 832 VYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKK----LNRRVLEKLIMSGA 887 G+ +K +G I+AII R G F L D C R + +R+ LE L+ +GA Sbjct: 831 RCGLACVKKTDKGLIDAIIAERTAAGPFVSLSDFCNRMSAGRPELLQDRKALENLVKAGA 890 Query: 888 FDRLGPHRAALMNSLGDALKAA--DQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWP 945 FD G R+ +M L + LK + Q + A+ PE E W Sbjct: 891 FDSTGATRSQMMAVLDEILKPSLDLQQPRKPAVPAL---------PEVGE--------WS 933 Query: 946 EQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARV 1005 + E+ +G+ LT P +++R L ++ +G + G+ A Sbjct: 934 PHLRRALEKRAMGICLTPAPPAYCHAKLKRPT-TTPLCSIYENPQGGRVAVDGIWKAVEY 992 Query: 1006 MVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDD 1058 K G + + L+D + +EV++ + + + L R +IV G+ D+ Sbjct: 993 KQGKDGCPMALAELEDNNAAIEVVIPAEIYESARHALLPGRPVIVEGRYECDE 1045 >UniRef50_D0JAY7 DNA polymerase III subunit alpha n=2 Tax=Blattabacterium RepID=D0JAY7_BLASB Length = 1434 Score = 619 bits (1596), Expect = e-175, Method: Compositional matrix adjust. Identities = 383/1206 (31%), Positives = 633/1206 (52%), Gaps = 90/1206 (7%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG---- 61 + H+ H+ +S++ LV +A MPA+ ITD+ NL G F A H Sbjct: 253 YSHIHNHTYFSILYSTVDIRSLVDRAIHFNMPAVGITDYGNLMGSFHFLNAIHSINKKNY 312 Query: 62 ----IKPIVGADFNVQCDLLGDELT--------HLTVLAANNTGYQNLTLLISKAYQRGY 109 IK IVG + + + L + T L+ N GY NL L S + G+ Sbjct: 313 PKKLIKGIVGCEVFLSDNYLQKKFTKDEPDKRYQQVFLSKNKKGYHNLAKLCSLGFTEGF 372 Query: 110 GAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLE 169 A P I + + + E LI L+G ++ ++L ++ +++E F D +++E Sbjct: 373 YAGIPRIGKKLIEKYKENLIALTGDLNAEIPYTILNYGERKAEKVFLWWKELFGDDFYIE 432 Query: 170 LIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP- 228 L+R G +E ++ ++ + + N+ ++D ++ +AH+I + + +G P Sbjct: 433 LLRHGLEEENHVNDILLKFSKKYHVKYIVQNNTFYLDKNEANAHDILLCVKNGEKQSTPI 492 Query: 229 ---KRPRNYSPQQ--YMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT 283 K R P Y ++ EEM ++F+D+PE+ E+ + + LP+F Sbjct: 493 GKGKGYRFGFPNHEFYFKNSEEMKKIFSDLPESFDFLEELVNKIESYHLSRKILLPKFQI 552 Query: 284 GDMSTEDYLVK-----RAKEGLEERLAFLFPDEEERLKR-RPEYDERLETELQVINQMGF 337 S ED + K R + +R+ + +ER K E ER+ EL+ I ++G+ Sbjct: 553 P-RSFEDPMDKIDGGNRGENRFLKRITY--EGAKERYKNMTKEIQERILFELKTIERIGY 609 Query: 338 PGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERV 397 PGYFLIV FIQ ++ + +GPGRGS AGS+VAY + IT++DP+++ LLFERFLNP R+ Sbjct: 610 PGYFLIVHNFIQQARKMNISIGPGRGSVAGSVVAYCIGITNIDPIKYHLLFERFLNPNRI 669 Query: 398 SMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVD 457 S+PD D+DF RD++IE V YG++ V+QIIT+ TM AK+ IRD GRVL D Sbjct: 670 SLPDIDIDFDDRGRDKIIEWVVQKYGKNQVAQIITYATMGAKSSIRDTGRVLDLSLKETD 729 Query: 458 RISKLIPPDPGMTLAKAFEAEPQLPEIYEAD-EEVKAL--------------IDMARKLE 502 R++K+IP ++L + +I + D ++ L + A+ LE Sbjct: 730 RLAKMIPN--MLSLKTILSENCSIEKIRKEDTNNIQKLRKIAINKDSLEGKVLQQAKILE 787 Query: 503 GVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTL 562 G R+ G HA G++I+P I ++ P+ +E +TQFD VE+AGL+K DFLGL+TL Sbjct: 788 GTIRSTGIHACGIIISPYNIKEYIPVSVSKESDLLLTQFDNHVVEHAGLLKMDFLGLKTL 847 Query: 563 TIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKR 622 TII A+ +I K+R N E + PL+D+K++ + Q+ ET AVFQ ES GM+ +++ Sbjct: 848 TIIKDAVNLIKKKRKNNTE-----LSFPLEDEKTYCLFQKGETIAVFQYESPGMQKYLRQ 902 Query: 623 LQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYG 682 L+PD F+D+IA+ AL+RPGPLQ + NFI RKHG+E I+Y D+ E LK TYG Sbjct: 903 LKPDKFDDLIAMTALYRPGPLQ--YIPNFISRKHGKEAITY-DLPEMEEFLKE----TYG 955 Query: 683 IILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAM 742 I +YQEQVM IAQ ++ ++ G AD+LR AMGKK+ E + R+ F + A K G + + Sbjct: 956 ITIYQEQVMLIAQKIADFSKGDADLLRIAMGKKQKEVLNTMRNQFIDSAMKKGYSKNILE 1015 Query: 743 KIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVD 802 KI+ E F+ Y FNKSH+ YA +++QT +LKAH+P E+MA+V++ +M N ++ ++ Sbjct: 1016 KIWKDWEYFSCYAFNKSHATCYAYIAFQTAYLKAHFPYEYMASVLSNNMHNIRQLTFFIE 1075 Query: 803 ECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFREL 862 EC +M + ++ PDIN F V D I +G+ IKGVGE ++ I++ R K G + + Sbjct: 1076 ECRKMNISVIHPDINESDSFFEVTDSNRIRFGLTGIKGVGENAVKIILQEREKNGPYTSI 1135 Query: 863 FDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAAL--------MNSLGDALKAADQHAK 914 DL R D + +N++ LE LI+SG+ D HR +N+L ++ + K Sbjct: 1136 LDLVKRIDLRIVNKKTLESLILSGSLDCFHIHREQYFHIENDEKLNTLEKIIRFGSKFQK 1195 Query: 915 AEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIE 974 A+ + E + + C W L E+E LG+Y + HP++ Y E+ Sbjct: 1196 AKN---------KSTEMKMDQPVIMGCDLWSNVYKLSKEKEVLGVYASAHPLDDYYYEM- 1245 Query: 975 RYVGGVRLKDMHPTER------GKVITAAGLVVAA-RVMVTKRGNRIGICTLDDRSGRLE 1027 +Y L ++ + GK I G++ + + G + G+ L+D + E Sbjct: 1246 KYFMNTSLSNLSLISKKESMFVGKKIHTCGILSKIEKKTYIRSGIKYGLFLLEDYNSSKE 1305 Query: 1028 VMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGG-LKMTAREVMDIDEAREKYARGLAI 1086 ++ KY+ +L + +L + +S + F K+ + ++ EK + L + Sbjct: 1306 FRIYGQKYLKYEPILLINNLLYLC--ISIEKFKDQEYKINILHIENLQNVLEKLVQKLIV 1363 Query: 1087 SLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGA-TWRVSPSDRLLND 1145 + +++ +++ + ++L + G +++ + R L F + + ++ + L Sbjct: 1364 KININDLNNTMISNI-ETLFSQQKGNKKLNIVLYDKENRIFLNFESRKYGININSSFLKK 1422 Query: 1146 LRGLIG 1151 L + G Sbjct: 1423 LEKING 1428 >UniRef50_B3XXI1 Putative DNA polymerase III, alpha subunit n=1 Tax=uncultured bacterium RepID=B3XXI1_9BACT Length = 1317 Score = 617 bits (1591), Expect = e-175, Method: Compositional matrix adjust. Identities = 398/1122 (35%), Positives = 616/1122 (54%), Gaps = 87/1122 (7%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL VHS+YS++DGL++ LV++A LG PA+A+TD + G + FY A G+KPI Sbjct: 7 FVHLHVHSEYSLLDGLSRINDLVERAVELGQPAIALTDHGAMYGTMPFYRACKSGGVKPI 66 Query: 66 VGADFNVQCDLLGD-------ELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDR 118 +G + + + D E H+ +LAAN TGY NL + S+A GY P IDR Sbjct: 67 IGIETYLAMRSMQDKDAQRDKERFHMLMLAANQTGYMNLLEVASRAQLDGY-YYKPRIDR 125 Query: 119 DWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRTGRPD 177 +++ +EG+I +G ++ R++ GN AL D+ + Y + F DR F+EL P+ Sbjct: 126 NFMAAHSEGIIATTGCMAAEIPRAIGAGNMALADKLMGEYVDIFGTDRLFVELQEHSIPE 185 Query: 178 EESYLHAAVELAEARGLP--VVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYS 235 + +E+A GL +ATNDV + ++D + HE+ + I G T++ PK +S Sbjct: 186 LTTINQKLIEMAPRFGLQNNFLATNDVHYTRAADANPHEVLLCIQTGSTVNAPKL--TFS 243 Query: 236 PQ-QYMRSEEEMCELFAD--IPE-----ALANTVEIAKRCNVTVRLGEYFLPQF--PTGD 285 + Y++S +EM LF PE +L N++ I + C+V + Y LP+F P G Sbjct: 244 DKGYYLKSYDEMFNLFRQNGYPEDIVLNSLRNSLAIVEMCDVNLDSKGYHLPEFDVPEG- 302 Query: 286 MSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVM 345 YL ++GL R EER + + RLE EL +I +MGF YFLIV Sbjct: 303 YDAHGYLRHLCEQGLIWRYG------EERARNDEDLRARLEHELNIITRMGFDTYFLIVW 356 Query: 346 EFIQWS-------KDNGVPV--------------GPGRGSGAGSLVAYALKITDLDPLEF 384 + +W+ + +G P RGSGAGS+VAY L IT +DPL Sbjct: 357 DLCEWAVRSDAWWETHGDPYPYESYTDWKEHDIWWNVRGSGAGSVVAYTLGITSIDPLVN 416 Query: 385 DLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRD 444 L+FERFLNP RVSMPD D+D+ + R Q++ + YG + V+QIITFGTM A+A IRD Sbjct: 417 GLIFERFLNPGRVSMPDIDLDYPDDVRGQMVAYTKRRYGEEKVAQIITFGTMGARAAIRD 476 Query: 445 VGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEP-------QLPEIYEADEEVKALIDM 497 VGR L P VD +++L+P PG + +P +L + Y+ + VK L+D Sbjct: 477 VGRALDMPLPDVDGVARLVPAIPGKPVKIKNVLDPDHEFYSAELTDRYKRESAVKTLLDT 536 Query: 498 ARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHP------VTQFDKSDVEYAGL 551 A LEGV R+A HA GV+++ + ++ PL G VTQ+ VE GL Sbjct: 537 ATNLEGVARHASSHAAGVIVSDRPLQEYVPLNRPTSGDEGLGGVDRVTQWPMEIVESIGL 596 Query: 552 VKFDFLGLRTLTIINWALEMINKRRAK---NGEPPLDIAAIPLDDKKS----FDMLQRSE 604 +K DFLGL TLT++ A +I +R P D I D ++ FDML R + Sbjct: 597 LKVDFLGLSTLTVMRRAARLIEERYGTVYTMDNIPYDEGHIGPDPERDPELLFDMLGRGD 656 Query: 605 TTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYP 664 VFQ+E GM+ L+ ++P F+ +IA ++L+RPGP+++ + +I R H + Sbjct: 657 VAGVFQVEGAGMRRLMMEMKPRRFDHIIAAISLYRPGPMEN--IPEYIRRMHSSIYDNKD 714 Query: 665 DVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQR 724 V++ +L+P+L+ TYGI++YQEQ+++IA L+GY G ADM+R+A+ KKK + M + R Sbjct: 715 IVEYHTPALEPILKDTYGILVYQEQIIRIASDLAGYAPGDADMIRKAVAKKKKKLMEEHR 774 Query: 725 SVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMA 784 F EGA + G + E+ I+ +E FA YGFNK+H+A YA V+ QT +LKAHYP E++A Sbjct: 775 IKFTEGAMERGFSREVCEAIWGDIEFFARYGFNKAHAADYAKVTCQTAFLKAHYPVEYLA 834 Query: 785 AVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGE---IVYGIGAIKGV 841 A+++ + DNTEKV E +G+ I PPDIN F + DD E I +G+GAIK Sbjct: 835 AMLSVERDNTEKVRRYFAEAKNLGIDIEPPDINRSDLDFTIEDDHERPCIRFGLGAIKNA 894 Query: 842 GEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNS 901 GE + I++ R G F +L DL R D +++ +R LE +I + F+R G + + Sbjct: 895 GEAALNLILDERRANGTFADLQDLSERVDLRRVGKRALEFMIKARVFERWGT-MPQFLEA 953 Query: 902 LGDALKAADQHAKAEAIGQADMFGVLAEE---------PEQIEQSYASCQPWPEQVVLDG 952 L + + + +A A GQ +FG L + + S +P P + +L+ Sbjct: 954 LDRIVADSSKTHEAAAAGQMSLFGALGGSNGGNGGMKLTADLLKPVDSLEPIPHKQMLEW 1013 Query: 953 ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012 E+E LG++++ HP+ + L + + + + T GK + AG++ R + TK+G+ Sbjct: 1014 EKEALGVHVSEHPMERPLAMLTSHTSAT-IGGLDITMNGKQVRIAGMISTLRTLTTKKGD 1072 Query: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQV 1054 + TL+D +++++LF + + D++++V+G+V Sbjct: 1073 PMAFATLEDMDNKIDLVLFPRTWKATRDQVVVDQVMLVTGKV 1114 >UniRef50_Q38WU5 DNA-directed DNA polymerase III, alpha subunit n=25 Tax=Lactobacillales RepID=Q38WU5_LACSS Length = 1110 Score = 616 bits (1588), Expect = e-174, Method: Compositional matrix adjust. Identities = 380/1122 (33%), Positives = 616/1122 (54%), Gaps = 64/1122 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FV L+V S Y++++ K LV A A G +LA+TD + GLV FY A A IKP+ Sbjct: 3 FVQLQVKSTYTLLESTTKITDLVTAAKARGYQSLALTDKNVVYGLVDFYKAAKAADIKPL 62 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 +G V + DE L +LA N TGYQN+ + +K + ++ + + L Sbjct: 63 LGITIEVGGLIQTDERFPLILLAKNLTGYQNILKISTKIMTQS-----ELVPFEAVQSLL 117 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 185 + L++++ + G++ R LL+ ++ Y E + + G +++ Sbjct: 118 QQLVVITPSQDGELVRLLLQNDAT----AAQTYIERLKAVVDADSLYLGISAKQAASRQR 173 Query: 186 V---ELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDG--FTLDDPKRPRNYSPQQYM 240 V +L++ +P+VA DVR+++ D A ++ I G L P+ P Y ++ Sbjct: 174 VPLGQLSQQTAVPLVALGDVRYLEPEDAFAVQVLQHIKAGTQVNLQTPQAPGGY----FL 229 Query: 241 RSEEEMCELFA--DIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAK 297 ++ F + EA+ANT +IA +C V + LPQF T S YL ++++ Sbjct: 230 EDVQQATAAFEALQLAEAVANTQKIAAQCQVDLSFKRAQLPQFETPAGQSAATYLKQQSQ 289 Query: 298 EGLEERLAFLFPDEEERLKRRPE-YDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGV 356 GL+ R + + PE Y RL+ ELQVIN+MGF YFLIV + +Q++ + Sbjct: 290 AGLQARF---------KTQPIPETYQTRLDYELQVINEMGFADYFLIVADVMQYAHQQNI 340 Query: 357 PVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIE 416 GPGRGS AG+LVAYAL+ITD+DP+ + LLFERFLNP R +MPD D+D +RD+V++ Sbjct: 341 MTGPGRGSAAGALVAYALRITDVDPIRYQLLFERFLNPNRANMPDIDLDIPDNRRDEVLD 400 Query: 417 HVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFE 476 +V YG++ ++QIITFGT+AAK ++DVGRV G + SK IP +TL +A++ Sbjct: 401 YVYQKYGQNHMAQIITFGTLAAKMALKDVGRVFGLSQFEMSAWSKAIPNVLKITLQEAYD 460 Query: 477 AEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKH 536 + ++ + L + A+++EG+ R+ HA G+V++ +T+ L + + Sbjct: 461 QSQAFKNLVADSQQNRLLFETAQRIEGLPRHYSTHAAGIVLSQAPLTETVALQSGGD-EI 519 Query: 537 PVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKS 596 +TQ +VE GL+K DFLGLR L I+ +++++++ + P + IPLDD + Sbjct: 520 ELTQLPMGNVEELGLLKIDFLGLRNLGILANIVKLVSQQTGQ----PFNPQNIPLDDPAT 575 Query: 597 FDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKH 656 + Q+ +T +FQ ES G+K++++RL+P FED++A AL+RPGP+++ +D FIDRK Sbjct: 576 LALFQQGDTNGIFQFESTGIKNVLRRLKPTSFEDIVATDALYRPGPMEN--IDTFIDRKS 633 Query: 657 GREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKK 716 G+ ++YPD +SL +L+PTYGI++YQEQVMQ A + G+TLG AD+LRRAM KKK Sbjct: 634 GKVPVTYPD-----DSLAEILQPTYGILVYQEQVMQAASKMGGFTLGEADILRRAMSKKK 688 Query: 717 PEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKA 776 + R+ F EGA G + A ++D +E+FA YGFN+SH+ AY+ +++ +LK Sbjct: 689 KAVIDASRTKFIEGALALGHTEQAATTVYDYIEQFANYGFNRSHAVAYSKIAFWLAYLKV 748 Query: 777 HYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIG 836 H P F AAV+ A ++ K + E + L +LPPDIN +F V D G I++G+ Sbjct: 749 HQPEAFFAAVLNAVLNQGTKTKTYLAEAKKRQLSVLPPDINLSQRYFKVTDAG-IIFGLY 807 Query: 837 AIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRA 896 +IKG+ + AI++ GG F+ + R D K L + L LI SGAFD+ P+R Sbjct: 808 SIKGLRRDFVAAILDEHQTGGPFKSVLQFLQRLDAKYLKKEALVALIYSGAFDQFNPNRN 867 Query: 897 ALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERET 956 AL+ +L D L + A +F +LA + + + + + LD E E Sbjct: 868 ALLMNLDDLLDSVKL-----AGDNMSLFEILAPKEKTVSNLTLTER-------LDKEAEY 915 Query: 957 LGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGI 1016 LG YL+GHP+ +Y + + RY + D+ P + +++ V +V+ TK+G ++ Sbjct: 916 LGAYLSGHPVEKY-ERVRRYYHVPEVSDLAPNQNVRLVL---FVRRIKVIRTKKGEQMAF 971 Query: 1017 CTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEA 1076 T D +G + V LF + L K+++++V G+ + L++ ++M ++A Sbjct: 972 VTGQDATGEISVTLFASVYRQVADWLTKEQVILVIGKT---EQRQELQLIGNQIMLAEQA 1028 Query: 1077 REKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLY 1118 ++ + + + ++ Q LE R G IPV LY Sbjct: 1029 QKGLPKATLYLRLSADLTREQQQKMYQLLEKSR-GPIPVILY 1069 >UniRef50_B9CKX0 DNA polymerase III subunit alpha n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CKX0_9ACTN Length = 1276 Score = 609 bits (1570), Expect = e-172, Method: Compositional matrix adjust. Identities = 386/1048 (36%), Positives = 559/1048 (53%), Gaps = 89/1048 (8%) Query: 62 IKPIVGAD---FNVQCDLLGDELT--HLTVLAANNTGYQNLTLLISKAYQRGYGAAGPII 116 IKPI G + C G + T HL +LA N TGY NL ++S+A + P Sbjct: 125 IKPIFGCEAYFITDDCIERGTKQTRYHLILLAKNETGYVNLMKMMSEAASKEMFYFKPRT 184 Query: 117 DRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRP 176 D L +EG+I S G + RS G + Y+E F D ++LE+ G Sbjct: 185 TLDMLRRYHEGIICTSACVSGIIPRSFFAGQPEEAERWALIYKEIFGDDFYLEVQDHGLS 244 Query: 177 D-------EESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPK 229 D + + + L + VVATND ++ D +I I G D Sbjct: 245 DPNWNGFTDRTLSEQILNLGHKLNIKVVATNDNHYLTREDASVQDIASCIGTGSKFADAN 304 Query: 230 RPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTE 289 R R + Y ++EEEM E+F+ PE + NT+E+A +CN + +LP+FP D++ Sbjct: 305 RKRMSGNEFYFKTEEEMREIFSWAPEVIDNTLEVADKCNYELDWTHMYLPKFP--DLAEG 362 Query: 290 DYLVKRAKEGLEERLAFLFPDEEERLK-RRPEYDERLETELQVINQMGFPGYFLIVMEFI 348 + +R ++ EE LA + + ++ ER E E +I + GF YFLIV E++ Sbjct: 363 ETSEERFRKECEEGLARRYGENWREVEISGINVKERFEYEYDIICKKGFADYFLIVQEYV 422 Query: 349 QWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCM 408 +W+K NG+ VGPGRGS AG++VAYA+ IT DPLE L+FERFL+P+R MPD D+DF Sbjct: 423 RWAKQNGIGVGPGRGSAAGAIVAYAMDITTFDPLENGLMFERFLSPQRSEMPDIDMDFDD 482 Query: 409 EKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG 468 E+R +V+EHV +YG + VS +IT+ T+ AK I D RVL +P R+SK+I DP Sbjct: 483 ERRLEVVEHVRQLYGPERVSHVITYSTIKAKQAINDACRVLDYPVYQGQRLSKMISNDPK 542 Query: 469 MTLAKAFEA---------EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAP 519 L+K P E Y +E + +ID A +EG+ R G HA V+IAP Sbjct: 543 AQLSKVLHKGDGEKNDLYNPDFEEAYNTEEASREIIDAALAIEGLHRGEGVHACAVLIAP 602 Query: 520 TKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKN 579 T + D P D +G+ +TQF+ V GL+K DFLGLRTLT+I+ AL+ I N Sbjct: 603 TPVNDHVPTKMDTKGEVEITQFEGHSVADMGLLKMDFLGLRTLTVISRALKNIK----AN 658 Query: 580 GEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFR 639 + +++ IP +D + + +++ T+ VFQ+ES GM IK ++P F+ ++AL+AL+R Sbjct: 659 FDVDINVDEIPFEDPEIYRLMREGRTSGVFQIESAGMTATIKGMRPTEFKHIVALIALYR 718 Query: 640 PGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSG 699 PGPL +GMV ++IDR +GREE D + L +L TYG ++YQEQVMQI+ +SG Sbjct: 719 PGPLGAGMVSSYIDRMNGREEPVDYDPR-----LHDILAETYGTMVYQEQVMQISMKMSG 773 Query: 700 YTLGGADMLRRAMGKKKPEEMAK------------QRSVFAEGAEKNGINAELAMKIFDL 747 +T G +D +R+A+ KKK + M + + EGA +NG E A I++ Sbjct: 774 FTAGESDKVRKAVAKKKIKLMQEVIQHWDDGADETMEQHWKEGAVRNGFKRETAEIIWED 833 Query: 748 VEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRM 807 V KFA Y FNKSHSA YA++ QT WLKAHYP E+MAAV+T+ M T+K+V V C + Sbjct: 834 VLKFASYAFNKSHSAGYAILVMQTAWLKAHYPHEYMAAVLTSFMGKTDKIVHYVSACRQE 893 Query: 808 GLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCA 867 G+K+ PDIN F +G I +G I+GVG G EAI+ R KGG F L D Sbjct: 894 GIKVSQPDINESGRDFTATKEG-IRFGFAGIRGVGAGVAEAIMAERQKGGPFSNLRDFID 952 Query: 868 RTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM-----NSLGDALKAADQHAKAEAIGQAD 922 R D + R V+E LI +GAFD G R LM N+ + L +A + + +A GQ Sbjct: 953 RMDASQAKRNVVEALIKAGAFDSTGYTRMQLMKLIDKNNPENLLDSAAKRQRDKASGQIS 1012 Query: 923 MFGVLAE-----------EPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQY-- 969 MF + +E +P+ +E W + L E + LG+Y++ HP+ Y Sbjct: 1013 MFDLFSEVEGSGFTEDFPDPDGVE--------WERRFKLSQEYDVLGIYVSDHPLTPYAY 1064 Query: 970 ------------LKEIERYV---GGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRI 1014 + E Y GG++ + P G+ I +G+V + +TK G+ + Sbjct: 1065 ALSLARDYELVDIDATEEYRAPDGGIKERFKVP--EGENIRLSGMVTNIQKRITKNGDPM 1122 Query: 1015 GICTLDDRSGRLEVMLFTDALDKYQQLL 1042 I TL+D G L ++LF A KY L Sbjct: 1123 AIVTLEDMEGELSLVLFPKAYKKYASTL 1150 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 23/48 (47%), Positives = 31/48 (64%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKF 53 FVHL HSD+S++D + +VK+A L MPALA+TD L G+ F Sbjct: 3 FVHLHNHSDFSILDAATRVNDMVKRAVDLKMPALALTDHGYLFGIPDF 50 >UniRef50_C7XU22 DNA polymerase III n=1 Tax=Lactobacillus coleohominis 101-4-CHN RepID=C7XU22_9LACO Length = 1114 Score = 604 bits (1558), Expect = e-171, Method: Compositional matrix adjust. Identities = 390/1166 (33%), Positives = 635/1166 (54%), Gaps = 75/1166 (6%) Query: 9 LRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA 68 L V S YS++ + LVK A G A+A+TD L G V FY A AGI+PI+G Sbjct: 9 LDVTSTYSLLQSTIRPRDLVKAAREQGYSAIALTDENVLYGAVDFYNAAQQAGIRPIIGL 68 Query: 69 DFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEGL 128 + L + T +TV+ N GY L L ++ + + +D + +++ Sbjct: 69 KLQLTFAELDERKTTVTVIEKNQQGYTELMQLSTQQM----TSKAELTVQDVVKQIDNCA 124 Query: 129 ILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVEL 188 I++ L + + ++++ P F+ + P E L +L Sbjct: 125 IIIK-----PTMAILTAHRDPTIQKLLSWFGNQ-PGDIFMGINLVLDPTERQVLK---DL 175 Query: 189 AEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCE 248 + GL ++A V +++++ + ++ AI DG ++ P + + Q Y+R+ + + Sbjct: 176 SLQNGLKLIADEPVEYLEANQYFPTQVLRAIGDGRQIESPLSTAHNTGQHYLRNAQNLTV 235 Query: 249 LF--ADIPEALANTVEIAKRCNVTVRLGEYFLPQF--PTGDMSTEDYLVKRAKEGLEERL 304 + A + +A+ N + ++ + + + LP+F P G ++T YL + GL++R Sbjct: 236 AYERAGLADAVENNEVLVQKSSFKINFQKPVLPEFAVPEG-VNTAQYLRQLCIIGLKKR- 293 Query: 305 AFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGS 364 L P+ + +Y +RLE EL VI+QMGF YFLIV + + ++ + GPGRGS Sbjct: 294 -HLAPNTTIK-----QYRDRLERELTVIHQMGFDDYFLIVWDIMAFAHRKQITTGPGRGS 347 Query: 365 GAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGR 424 AGSLVAYAL ITD+DPLE+ LLFERFLNPER MPD D+D +R +V+E+V YG Sbjct: 348 AAGSLVAYALAITDVDPLEYGLLFERFLNPERAQMPDIDLDIPDNRRQEVLEYVHQRYGH 407 Query: 425 DAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIS---KLIPPDPGMTLAKAFEAEPQL 481 + V+QIITFGT+AA+ V+RDVGRV G P V++I +++ +TLA+A + L Sbjct: 408 ERVAQIITFGTLAARQVVRDVGRVFGVPKYQVEQIIDTLRVLSRHRSVTLAEAIQQSQPL 467 Query: 482 PEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLY-CDEEGKHPVTQ 540 + D K +I++ARKLEG+ R+ HA GVV++ T + + PL ++E +TQ Sbjct: 468 RNLMTDDPINKLVIEVARKLEGLPRHYSTHAAGVVLSATPLKEIVPLQPGNDEAGLLMTQ 527 Query: 541 FDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDML 600 F K VE GL+K DFLGLR L+I++ AL +I++ P DI +PL+D K+ + Sbjct: 528 FPKEIVESVGLLKMDFLGLRNLSIMDRALAIIHQ-----TTPGFDITKVPLNDHKTIQLF 582 Query: 601 QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE 660 ++ T +FQ ES G++ +++L PD FED++A+ AL+RPGP+Q+ + +FI RKHG+E Sbjct: 583 KQGLTDGIFQFESTGIRQTLQQLAPDNFEDIVAVNALYRPGPMQN--IPHFIARKHGQEP 640 Query: 661 ISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM 720 I PD +SL+P+L PTYGI++YQEQVMQ+A ++G++LG AD+LRRAM KKK M Sbjct: 641 IQLPD-----QSLQPILGPTYGILVYQEQVMQVASKMAGFSLGQADLLRRAMSKKKQATM 695 Query: 721 AKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA 780 R F GA KNG N +A ++F+ +++FA YGFN+SH+ AY+ ++Y+ +LK H+ Sbjct: 696 ESMRQRFISGAVKNGYNQPIAEQVFNYIDQFANYGFNRSHAVAYSKMAYEMAYLKCHFTT 755 Query: 781 EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG 840 F A++ + N +KV + + R G++I+ P+IN + + +G+IV G IKG Sbjct: 756 AFFTALLAIE-PNMDKVRLHLADAQRFGVRIIGPNINQSQMEYSLQ-NGQIVMGFSMIKG 813 Query: 841 VGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMN 900 + I+AIIE R K G F+ L D R K ++E LI +GAFD+LG +RA ++ Sbjct: 814 MRRDFIQAIIEER-KAGQFKNLPDFVQRLGEKWQKAALIEPLIYAGAFDQLGYNRAEMIE 872 Query: 901 SLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLY 960 L + + AD+ ++ E +P L E+E LG+Y Sbjct: 873 GLSGVFAGNE-----FSFQSADLQPIMKRRQE-----------YPLTYRLQKEQEYLGMY 916 Query: 961 LTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNR-IGICTL 1019 L+GHP+ QY + + + R+ D+ P K++ L+ R + TK+ ++ + T Sbjct: 917 LSGHPVTQY-QRVRQQQHTQRIMDLKPGSSVKLLV---LLNQIRQINTKKTHQPMAFATA 972 Query: 1020 DDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDI----DE 1075 D +G +++ +F ++ L+ I+++ G S + + L++ A +++ + + Sbjct: 973 SDETGSMDITIFPRQYQRFVDALKPTTIVMIEG--SVEQRNERLQVIANQIIPVERLLNN 1030 Query: 1076 AREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWR 1135 R+ + I ++D D+LL ++ +L G PV + Y A +A W Sbjct: 1031 QRQVSHQRWVIRVSDNSSVDELLPKML-ALTKSMHGNTPV-VIYNVAAQQATTLPRQQW- 1087 Query: 1136 VSPSDRLLNDLRGLIGSEQVELE-FD 1160 V D++ + L + GS V L+ FD Sbjct: 1088 VGQQDKVRDALNKVFGSNNVVLQAFD 1113 >UniRef50_C6X5Z0 DNA polymerase III alpha subunit n=1 Tax=Flavobacteriaceae bacterium 3519-10 RepID=C6X5Z0_FLAB3 Length = 1567 Score = 602 bits (1553), Expect = e-170, Method: Compositional matrix adjust. Identities = 375/1090 (34%), Positives = 578/1090 (53%), Gaps = 115/1090 (10%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGA--GHGAGIK 63 + + HS YS + L+ KA + A+ I D N+ G KF A IK Sbjct: 263 YFNFHNHSIYSSLQSSTHINELISKAMDNDLKAVGIVDLGNMMGAFKFVSEVEKTNAQIK 322 Query: 64 -------------------------------PIVGADFNV-----QCDLLGDE---LTHL 84 P++G +F + Q D+ T++ Sbjct: 323 KTYQTYLENKEKADREGTAFTEKEPRKEPLIPVIGCEFYISDRPEQKQFTKDDPDRRTNV 382 Query: 85 TVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLL 144 +LA N +GY+NL L S Y G+ P I R + E + LI L+ G +GDV ++L Sbjct: 383 VLLAKNFSGYKNLVKLSSLGYVNGFYFGVPRISRKMIAEFKDNLIALTAGTLGDVPSTVL 442 Query: 145 RGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRF 204 +E +++ F + +++++ +EE + A+ + ++A N+ + Sbjct: 443 EFGEQKGEEVFKWWKNTFGEDFYVQIQNHEVEEEEHLNEVLLGFADQYDVKILAQNETFY 502 Query: 205 IDSSDFDAHEIRVAIHDGFTLDDP------KRPRNYSPQQYMRSEEEMCELFADIPEALA 258 + SD + +I I DG L P KR S Q Y+++ +E+ + F P+A Sbjct: 503 TNKSDANIQDILYCIKDGEKLSSPVGKGFGKRRGLPSKQFYIKNTDELKQSFIQFPDAFE 562 Query: 259 NTVEIAKRCNVTVRLGEYFLPQF--PTGDMSTED-----------YLVKRAKEGLEERLA 305 E+ + + LP+F P + ED YL G E+R Sbjct: 563 AYTELLGKFEPYTLKRDVLLPEFDIPEEFLHDEDKTDGGKRGENAYLRHLTYAGAEKR-- 620 Query: 306 FLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSG 365 +P+ + +++R L+ EL+VI + G+PGYFLIV +F ++ GV VGPGRGS Sbjct: 621 --YPEITDEIRKR------LDFELEVIAKTGYPGYFLIVQDFCNEARKMGVWVGPGRGSA 672 Query: 366 AGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRD 425 AGS VAY IT++DP+E++LLFERFLNPER+SMPD D+DF E RD++I+ V + YG++ Sbjct: 673 AGSAVAYCTGITNVDPIEYNLLFERFLNPERISMPDIDIDFDDEGRDKIIKWVVEKYGKN 732 Query: 426 AVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPE-- 483 V+QIIT+ + K+ I+D GRVL + I+KLIP PGM +AKAF +LP Sbjct: 733 NVAQIITYSVLGGKSAIKDAGRVLDLSIPETNNIAKLIPSAPGMNIAKAFSKFEKLPPED 792 Query: 484 ----------IYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEE 533 + +E ++ A+++EG RN G HA GV+I P I++ P+ Sbjct: 793 KVLAQEMKDILANPTDERYDVLYAAQRMEGCIRNTGIHACGVIITPEDISNLIPITI--A 850 Query: 534 GKHP---VTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIP 590 K P V+QFD S E AGL+K DFLGLRTLTII A+++I +R +DI +P Sbjct: 851 AKDPDILVSQFDNSVAESAGLLKMDFLGLRTLTIIKHAIKLIKERHGTE----IDIDHVP 906 Query: 591 LDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDN 650 LDD K++ + Q T +FQ ES GM+ ++ L+P F D+IA+ AL+RPGP++ + N Sbjct: 907 LDDAKTYQLFQEGRTIGIFQYESPGMQKYMRELKPTKFADLIAMNALYRPGPIK--YIPN 964 Query: 651 FIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRR 710 FI+RK+ EE Y E K LE TYGI +YQEQVM ++Q L+ +T G AD LR+ Sbjct: 965 FINRKNEIEETVY-----DLEETKEFLEETYGITVYQEQVMLLSQKLANFTKGEADTLRK 1019 Query: 711 AMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQ 770 AMGKK + K F E +KN +N + KI+ E FA Y FNKSHS YAL++Y Sbjct: 1020 AMGKKDRATLDKMYPKFLEEGQKNNLNVDKLNKIWKDWEAFAEYAFNKSHSTCYALIAYH 1079 Query: 771 TLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGE 830 T +LKA+YPAE+MA+VMT +++NT+++ +++C +G+ +L P +N Y F VN+ G+ Sbjct: 1080 TAYLKANYPAEYMASVMTNNLNNTKQITMFMEDCKSIGVDVLGPAVNESQYEFSVNEKGQ 1139 Query: 831 IVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDR 890 I +G+GAIKG+G GP EAI++ R K ++ ++D + + ++N+RV E L+++GAFD Sbjct: 1140 IRFGLGAIKGIGSGPSEAIVDGR-KNEKYKNIYDFFEKIPSSQMNKRVAESLVVAGAFDE 1198 Query: 891 LGP-HRAALMN-------SLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942 + HRA + ++ L+ ++ + +F AEE +IEQ + Sbjct: 1199 VDRYHRAQYFDIDITGKTTIERLLRYGQSFQDSKNEIENSLFADFAEEV-KIEQPKINPA 1257 Query: 943 P-WPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDM------HPTERGKVIT 995 P W +L+ E+E +G YL+ HP+++Y + + G + K++ P E K++ Sbjct: 1258 PEWQNMHMLNKEKEIIGFYLSAHPLDEYRFQYQFLQGALSKKEILEGKKDEPVEIEKIVL 1317 Query: 996 AAGLVVAARV 1005 A L A V Sbjct: 1318 APELAEIADV 1327 >UniRef50_A8RC96 Putative uncharacterized protein n=2 Tax=Erysipelotrichaceae RepID=A8RC96_9FIRM Length = 1027 Score = 600 bits (1548), Expect = e-170, Method: Compositional matrix adjust. Identities = 357/1066 (33%), Positives = 591/1066 (55%), Gaps = 48/1066 (4%) Query: 7 VHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIV 66 VHL V S Y+++ ++ G ++A+TD + G + FY A IKPI Sbjct: 3 VHLHVRSAYTLLQSTLTIPKIIACTKQHGYQSVALTDKNVMHGAMAFYHACIKENIKPIF 62 Query: 67 GADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNE 126 G + D D L + +LA N+ GY +L L + G + + L + Sbjct: 63 GMEVEAAYD--NDSLGFI-LLAKNDQGYVDLMKLSTLL---NTGEHAKQVSFEELCLYTK 116 Query: 127 GLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAV 186 ++L+ G + L++ L+ + + + F D +++ + R +S Sbjct: 117 DCVVLTNGDQNIMETYLVKEEIGLLSKLLQLCTQSFTD-FYVSIARNDSGLLKSKNPRLK 175 Query: 187 ELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEM 246 L + + VA + + F D ++ ++++ AIH ++DD R N+SP++Y RS+ EM Sbjct: 176 SLCKEMKIRTVALSRIYFQDEAEEESYKTLCAIHQQVSVDD--RMLNFSPKRYYRSQAEM 233 Query: 247 CELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTG-DMSTEDYLVKRAKEGLEERLA 305 +L+ + E L + EIA +CNV ++ + LP+F +S+E++L +GL +R+ Sbjct: 234 AQLYDE--EDLLASEEIAAKCNVKMQFPQAILPKFKNKYGVSSEEFLRNLCHKGLAKRMH 291 Query: 306 FLFPDEEERLKRRPE-YDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGS 364 F + P+ Y +RLE EL VI M + YFLIV +FI+++K + +GPGRGS Sbjct: 292 F---------QAIPKVYQQRLEYELDVIINMHYADYFLIVWDFIRFAKSQNIYIGPGRGS 342 Query: 365 GAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGR 424 AGSLV+Y L IT +DPL+++LLFERFLNPERVSMPD D DF +RD+VIE+V +YG Sbjct: 343 AAGSLVSYCLGITHVDPLQYNLLFERFLNPERVSMPDIDTDFPDNRRDEVIEYVKGLYGS 402 Query: 425 DAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEI 484 S IITF T+AAK V+RDVGR + +D + K++P P +TL +E + + Sbjct: 403 HRASHIITFNTLAAKQVLRDVGRAMNISLREIDSLCKMVPSMPKVTLDYTYENSARFKQK 462 Query: 485 YEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKS 544 + + + L ++++LEG+ R+A HA G+V++ I+ PL D + TQF Sbjct: 463 INSSQLYRKLFAISKQLEGLPRHASLHAAGIVLSNDAISSVCPL-IDVDAGISATQFTMD 521 Query: 545 DVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSE 604 +E GL+K DFLGLR LTII+ + +IN ++ E LDI IPL+DKK+F ++Q + Sbjct: 522 YMEELGLIKMDFLGLRNLTIIDEVVNLIN----RDHENKLDIMHIPLNDKKTFALIQAVD 577 Query: 605 TTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYP 664 T VFQLES GMK+L+++++P CFED++A VALFRPGP+++ + +++R+ +++ Y Sbjct: 578 TVGVFQLESEGMKNLLRKMKPTCFEDIVATVALFRPGPMEN--IPEYLERRANPQKVDYI 635 Query: 665 DVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQR 724 H LKP+LE TYGI++YQEQ+MQ+AQV++G++LG AD LR+A+ KKK EE+A+ + Sbjct: 636 -----HPLLKPILENTYGIMIYQEQIMQVAQVMAGFSLGKADNLRKAISKKKGEELARLK 690 Query: 725 SVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMA 784 + F +GA++ G +LA+ +++L+ KFA YGFN+SHS AY +++YQ +LKA+ P F Sbjct: 691 NDFIQGAKQKGFEEQLAIHVYELIMKFANYGFNRSHSVAYGMIAYQMAYLKANAPLYFFV 750 Query: 785 AVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEG 844 +++ + + + K + E + G+ IL P +N + + + + + + IKG+G Sbjct: 751 SLLNSMIGSESKTSEYIFEAKKRGISILLPSVNFSGNGYRI-EKRSLRFPLNGIKGIGNA 809 Query: 845 PIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGD 904 I++ RN G FR+ FD AR + ++ +E LI +GA D +R++++ +L D Sbjct: 810 VCSQILKERNSHGKFRDYFDFVARMSAIHIGKKTMEILIYAGALDEFNINRSSMIATLED 869 Query: 905 ALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGH 964 AL+ + K E Q L +P I ++++ E+E LG YL+ H Sbjct: 870 ALRYGEL-VKIEDADQILFAFELVSKPAIISVK------EHRSMLVEKEKECLGFYLSSH 922 Query: 965 PINQYLKEIERYVGG-VRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRS 1023 PI K + + + LK +RG V ++ + TK G + D + Sbjct: 923 PIELLRKRMNAQLAPLIALK----AQRGYV-RFLCMIERVKQHRTKNGALMAFAVSADET 977 Query: 1024 GRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTARE 1069 +++++ + + Y + L + + + G + ++ KMT E Sbjct: 978 SKIDLVCMPNIYEIYHEKLVRGKYFYIEGVIDKENSCLVKKMTPIE 1023 >UniRef50_B7ABG0 DNA polymerase III, alpha subunit n=2 Tax=cellular organisms RepID=B7ABG0_THEAQ Length = 1645 Score = 597 bits (1540), Expect = e-169, Method: Compositional matrix adjust. Identities = 354/837 (42%), Positives = 497/837 (59%), Gaps = 78/837 (9%) Query: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVK--KAAALGMPALAITDFTNLCGLVKFYGAGHG 59 S+ +F HL H+ +S++DG AK L+K K PALA+TD NL G V+FY Sbjct: 3 SKLKFAHLHQHTQFSLLDGAAKLQDLLKWVKETTPEDPALAMTDHGNLFGAVEFYKKATA 62 Query: 60 AGIKPIVGADFNVQCDLLGDE---------LTHLTVLAANNTGYQNLTLLISKAYQRGYG 110 G+KPI+G + V + D HLT+LA + TGYQNL L S+AY G+ Sbjct: 63 MGVKPIIGYEAYVAAESRFDRKRGKGLDGGYFHLTLLAKDFTGYQNLVRLASRAYLEGF- 121 Query: 111 AAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170 P IDR+ L E +EGLI LSG ++ + +L+ L + + Y F DR+F+E+ Sbjct: 122 YEKPRIDREILREHSEGLIALSGCLGAEIPQFILQDRLDLAEARLNEYLSIFGDRFFIEI 181 Query: 171 IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230 G P+++ E A+ GL +VATND ++ D AHE+ +AI TLDDP+R Sbjct: 182 QNHGLPEQQKVNQVLKEFAQRYGLGMVATNDGHYVRKEDARAHEVLLAIQSKTTLDDPER 241 Query: 231 PRNYSPQQYMRSEEEMCELFADIP---EALANTVEIAKRCNVTVRLGE---YFLPQFPTG 284 R + Y+++ EEM + ++ E NTVEIA+ C+V + +G+ Y +P+FP Sbjct: 242 WRFPCDEFYVKTPEEMRAMLPEVEWGDEPFDNTVEIARMCDVDLPIGDKMVYRIPRFPLP 301 Query: 285 DMSTE-DYLVKRAKEGLEER----------------LAFLFPDEEERL------------ 315 + TE YL + GL R L + P +ER+ Sbjct: 302 EGRTEAQYLRELTFLGLLRRYPDRITEAFYREVLRLLGTMPPHGDERVLAEALARVEEKA 361 Query: 316 -----KRRPEYD-----------ERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVG 359 KR P + R EL VI +MGFPGYFLIV ++I W++ +GV VG Sbjct: 362 WEELRKRLPPLEGVREWTAEAILHRALYELSVIERMGFPGYFLIVQDYINWARGHGVSVG 421 Query: 360 PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVA 419 PGRGS AGSLVAYA+ IT++DPL F LLFERFLNPERVSMPD D DF +RD+VI++V Sbjct: 422 PGRGSAAGSLVAYAVGITNIDPLRFGLLFERFLNPERVSMPDIDTDFSDRERDRVIQYVR 481 Query: 420 DMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIP-----PDPGMTLAKA 474 + YG D V+QI TFG++A+KA ++DV RV G P+ + ++KLIP P P L +A Sbjct: 482 ERYGEDKVAQIGTFGSLASKAALKDVARVYGIPHKKAEELAKLIPVQFGKPKP---LQEA 538 Query: 475 FEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEG 534 + P+L E DE ++ +I++A +LEG+ R+A HA GVVIA +TD PL D+EG Sbjct: 539 VQVVPELRAEMEKDERIRQVIEVAMRLEGLNRHASVHAAGVVIAAEPLTDLVPLMRDQEG 598 Query: 535 KHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDK 594 + PVTQ+D VE GL+K DFLGLRTLT ++ A ++ + + LD +PLDD Sbjct: 599 R-PVTQYDMGAVEALGLLKMDFLGLRTLTFLDEARRIVKESKGVE----LDYDRLPLDDP 653 Query: 595 KSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDR 654 K+F++L R ET VFQLES GM ++ L+P ED+IALV+L+RPGP++ + +I R Sbjct: 654 KTFELLSRGETKGVFQLESGGMTATVRGLKPRRLEDIIALVSLYRPGPMEH--IPTYIRR 711 Query: 655 KHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK 714 HG+E +SY + + L+P+L+ TYGI +YQEQ+MQIA ++GY+LG AD+LRRAMGK Sbjct: 712 HHGQEPVSYAEFPHAEKYLRPILDETYGIPVYQEQIMQIASQVAGYSLGEADLLRRAMGK 771 Query: 715 KKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQT 771 K+ EEM K R F GA++ G+ E A ++FD++E FA YGFNK A +V ++T Sbjct: 772 KRVEEMQKHRERFVRGAKERGVPEEEANRLFDMLEAFANYGFNKCLPARAKVVDWRT 828 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 126/376 (33%), Positives = 209/376 (55%), Gaps = 35/376 (9%) Query: 757 NKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDI 816 + SH+AAY+L+SYQT ++KAHYP EFMAA+++ + +++KV + + +G+ +LPPDI Sbjct: 1239 HNSHAAAYSLLSYQTAYVKAHYPVEFMAALLSVERHDSDKVAEYIRDARALGIPVLPPDI 1298 Query: 817 NSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNR 876 N + F V + EI++G+ A+K VGE AI+E R +GG F+ L D R + +N+ Sbjct: 1299 NRSGFDFKVVGE-EILFGLSAVKNVGEMAARAILEERERGGPFKSLGDFLKRLPEQVVNK 1357 Query: 877 RVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLA--EEPEQI 934 R LE L+ +GA D G RA L+ SL L+ A A+ G++ + G+ A EEP + Sbjct: 1358 RALESLVKAGALDAFG-DRARLLASLEPLLRWA---AETRERGRSGLVGLFAEVEEPPLV 1413 Query: 935 EQSYASCQPWPEQVVLDGERETLGLYLTGHPINQY----------LKEIERYVGGVRLKD 984 E S P E +L E+E LG+Y++GHP+ +Y ++E+ +V G+ Sbjct: 1414 EAS-----PLDEITMLRYEKEALGIYVSGHPVLRYPGLREVASCTIEELSEFVRGL---- 1464 Query: 985 MHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEK 1044 R KV+ +G+V T+ G + TL D +G LEV++F A + L++ Sbjct: 1465 ---PGRPKVLL-SGMVEEVVRKPTRSGGMMARFTLSDETGALEVVVFGRAYEGVSPKLKE 1520 Query: 1045 DRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQS 1104 D L+V +V + L++ A+ V ++E E + L + + +D++ + RL+ Sbjct: 1521 DIPLLVLAEVEKGE---ELRVLAQAVWTLEEVLEA-PKALEVEVDHALLDEKGVARLKSL 1576 Query: 1105 LEPHRSGTIPVHLYYQ 1120 L+ H G++PV+L Q Sbjct: 1577 LDEH-PGSLPVYLRVQ 1591 >UniRef50_B1HX19 DNA polymerase III subunit alpha n=2 Tax=Bacillaceae RepID=B1HX19_LYSSC Length = 1020 Score = 596 bits (1536), Expect = e-168, Method: Compositional matrix adjust. Identities = 380/1029 (36%), Positives = 554/1029 (53%), Gaps = 68/1029 (6%) Query: 38 ALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNL 97 A AI + T L GL+ F A A I ++G NVQ D L + A + GYQ L Sbjct: 28 ACAIVN-TKLYGLLPFCKAMQQAKIHAVMGLSVNVQWH---DTTLPLVLYAQSQEGYQQL 83 Query: 98 TLLISKAYQRGYGAAGPIIDRDWLIELNEG-LILLSGGRMGDVGRSLLRGNSALVDECVA 156 + S A R G ++ WL G L LLS + + L+ +V Sbjct: 84 LKISSAASIREDG----VLPWKWLEGYAAGCLALLSSDDLAE-----LKDWHGVVSALAH 134 Query: 157 FYEEHFPDRYFLELIRTG--RPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHE 214 ++ HF ++ + R G E+ L VE E + +P+VA F+ D A+E Sbjct: 135 LFQHHF----YMGITRPGGVALANENEL---VEWCEGQRIPLVAVQSCYFLRPEDHFAYE 187 Query: 215 IRVAIHDGFTLDDP----KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVT 270 + AI G L D K ++P + +E F D PE L ++ C Sbjct: 188 VARAIDTGDKLGDTMLTAKLQGYFAP-----TAQEWQSWFTDRPEWLETCGQMLASCRAI 242 Query: 271 VRLGEYFLPQFPTGDMST-EDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETEL 329 + +P+FP T E LVK A GLEER +L Y ERL EL Sbjct: 243 IPEMSVQMPKFPVPVGETAESLLVKEAFSGLEERF--------NQLDIPYGYRERLRYEL 294 Query: 330 QVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFE 389 ++I MGF YFL+V +F++++KDN + GPGRGS AGSLVAY+L IT +DPL + LLFE Sbjct: 295 EIICSMGFADYFLVVADFMRFAKDNRILTGPGRGSSAGSLVAYSLAITQVDPLAYGLLFE 354 Query: 390 RFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVL 449 RFLNPER+S+PD D+DF KR QVI++VA YG+ V+QIITFGT++AKAV RDV RV Sbjct: 355 RFLNPERISLPDIDIDFVDSKRHQVIQYVAQKYGKGNVAQIITFGTLSAKAVARDVARVF 414 Query: 450 GHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAG 509 G +++ISK+IP PG+TL KA E L E D + + ++A+KLEG+ RN+ Sbjct: 415 GFGAEVLEKISKMIPNKPGITLQKALEESYDLQEWLSEDHQHQRWFEVAQKLEGLPRNSS 474 Query: 510 KHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWAL 569 HA G+VIAP+ + + P+ EG + TQ+ DVE +GLVK DFLGLR LTI L Sbjct: 475 THAAGIVIAPSSLVNTVPIEDGHEGIY-CTQWPMGDVEASGLVKMDFLGLRNLTI----L 529 Query: 570 EMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFE 629 E I K G P +D IP+ D+K+F +LQ +T+ +FQLES GMK ++ + P F Sbjct: 530 EQIRWSIYKAGGPWIDFERIPMHDEKTFQLLQSGDTSGIFQLESEGMKQALRDIHPTQFL 589 Query: 630 DMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQ 689 D++A+ AL+RPGP++ + + RK G+E + P H L+P+L+ T+G+I+YQEQ Sbjct: 590 DIVAVNALYRPGPME--FIPVYARRKAGKELVVMP-----HPVLEPILQETFGVIVYQEQ 642 Query: 690 VMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVE 749 +++IA VL+G+++G AD+LRRA+ KK + + +Q+ F +GA K G + +A ++++L+ Sbjct: 643 IIKIASVLAGFSMGQADLLRRAVSKKNRQVLEEQQVTFVQGALKQGYDQHVATEVYELIV 702 Query: 750 KFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGL 809 +FA YGF KSH+ AY+++SYQ +LKAH+P F AA+++ N +K+ LV E G+ Sbjct: 703 RFADYGFPKSHAVAYSIISYQMAYLKAHFPQSFYAALLSNATGNVDKIQQLVQEAKDKGI 762 Query: 810 KILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKG-GYFRELFDLCAR 868 PP + +F V +G I Y + IKGV IE+I R LFDL Sbjct: 763 PFYPPSLKDSTKYFTVEQEG-IRYSLAGIKGVPHTFIESINTLRQTNPQALYNLFDLAVA 821 Query: 869 TDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLA 928 + +V+E LI +GA D L RA L+ ++ ALK A+ E I + A Sbjct: 822 LSAQHFKPKVIESLIYAGALDYLEKDRAVLIMTIDAALKHAELLRPNEDIDIST-----A 876 Query: 929 EEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIER-YVGGVRL--KDM 985 E + Y P++ L E+E+LG Y++ HP+ Q ER Y V +++ Sbjct: 877 TEFNFGKPKYMQVDDMPQKEKLIHEKESLGFYISAHPVTQ-----ERPYWADVNCTSREL 931 Query: 986 HPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKD 1045 G + G++ + + TK+G ++ L D G + LF Q LL +D Sbjct: 932 KQMRDGTYVKMIGVMEEVKKIRTKKGEQMAFVQLQDEHGSVSATLFPQVFQFVQDLLVED 991 Query: 1046 RILIVSGQV 1054 IL+V G + Sbjct: 992 EILVVEGNL 1000 >UniRef50_Q1WTT4 DNA polymerase III alpha subunit n=2 Tax=Lactobacillus salivarius RepID=Q1WTT4_LACS1 Length = 1097 Score = 591 bits (1523), Expect = e-167, Method: Compositional matrix adjust. Identities = 368/1114 (33%), Positives = 594/1114 (53%), Gaps = 69/1114 (6%) Query: 9 LRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA 68 L+V S YS++ + + VK LG AL +TD ++ G++ FY AGIKPI+G Sbjct: 5 LQVLSSYSLLQSPLRISEYVKLGKELGYSALVLTDINSMYGVLDFYHECVKAGIKPIIGI 64 Query: 69 DFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISK---AYQRGYGAAGPIIDRDWLIELN 125 GD+ +A N+ GYQNL + SK A Y + D + E Sbjct: 65 TLQS-----GDD--EYIFIAKNSNGYQNLMNISSKRLTAVDENYKNIFKLTD---ITEYL 114 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTG-RPDEESYLHA 184 + +I++ + S L N + D+ E I G P++ ++ Sbjct: 115 QDVIVI-------LNPSYLTVNDIISDQVTELQTLVSA----AETIYYGVNPNDRDAINN 163 Query: 185 AVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEE 244 + AE L + V+++ D+ + ++ AI G ++ +N Y+ + E Sbjct: 164 DLMAAEKLQLETILLTPVKYLKERDYFSTKVLQAIGTGENVNPNWNFKN--DGNYLHTPE 221 Query: 245 EMCELFAD-IPEALANTVEIAKRCNVTVRLGEYFLPQFP-TGDMSTEDYLVKRAKEGLEE 302 E L D + A N + + +CN+T+ + LP F T +S+E +L K +EGL + Sbjct: 222 EYGRLGTDYLSNAYQNAINVIAQCNLTLNFPKTQLPHFKETNGLSSEAFLRKLCQEGLAK 281 Query: 303 RLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGR 362 R+A EE +K + EY RL+ EL VI++MGF YFLIV + ++ +N + GPGR Sbjct: 282 RIA------EENIKNQEEYQNRLDYELSVIHRMGFDDYFLIVWDVTNFAHENNILTGPGR 335 Query: 363 GSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMY 422 GS AGSLV+Y L ITD+DP+++DL+FERFLN ER MPD D+D KRD +IE++ Y Sbjct: 336 GSAAGSLVSYTLYITDIDPIKYDLIFERFLNEERAQMPDIDLDIPDIKRDTIIEYLHQKY 395 Query: 423 GRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLP 482 G+ ++QIITFGT+ K V+RDV RV D SK IP + G+TL +A+ + L Sbjct: 396 GQQHMAQIITFGTLKTKQVLRDVARVFDLKTYEADAWSKAIPKEYGITLKEAYASSQSLK 455 Query: 483 EIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFD 542 + + + + L + A LEG+ R+ HA G++++ + D P+ +G ++QF Sbjct: 456 NLVADNSKNRLLFETAIALEGLPRHYSTHAAGIILSDDDLVDHVPVQIGGDGI-LMSQFA 514 Query: 543 KSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQR 602 K+ VE GL+K DFLGLR L+I+ + +I K DI I LDD ++ + Q Sbjct: 515 KNQVEEVGLLKMDFLGLRNLSILENTITLI----KKGYHIDFDIRKINLDDPETLKIYQN 570 Query: 603 SETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEIS 662 +ET+ +FQ ES G++ ++ +L+P FED+ A+ AL+RPGP+Q+ +D FI RKHG I+ Sbjct: 571 AETSGIFQFESAGIRGVLTKLKPTSFEDVAAVNALYRPGPIQN--IDEFIARKHGERPIT 628 Query: 663 YPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAK 722 YP + L+ +L+ TYGI++YQEQVMQ+A + G+TLG AD LRRAM KKK + +++ Sbjct: 629 YPS-----KELEGILKQTYGIMVYQEQVMQVASTMGGFTLGQADSLRRAMSKKKHDIISR 683 Query: 723 QRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEF 782 +F GA K G E+A K++ + +F YGFN+SH+ AY+ +S++ ++KAHYPA F Sbjct: 684 MEVMFINGAMKKGYTHEVAKKVYAYIMEFGDYGFNRSHAVAYSKMSFELAYIKAHYPAAF 743 Query: 783 MAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVG 842 AA++ + + N K V E G+K+ PDIN ++ +G I +G+ IK + Sbjct: 744 FAALLNSVIGNPRKTKDYVLEAKNKGVKVHHPDINIS-QSLYILRNGGIYFGLSCIKSLR 802 Query: 843 EGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSL 902 + ++ I++ R + G F+ + D R D + L R ++E LI SG FD G R L+ L Sbjct: 803 KNFLQDILQERKRSGIFKNMEDFLQRIDKRYLKRELIEILIYSGVFDTFGQSRKELLAML 862 Query: 903 GDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLT 962 L + ++F +LA + +E+ S +L+ E LG YL+ Sbjct: 863 PRLLSNIELSG-----NNVELFSILAPKKTTVEKIEISNDE-----LLEKENYYLGAYLS 912 Query: 963 GHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDR 1022 GHP+ +Y E+ R+ ++ + + K ++ + +++ TK G+++ T D+ Sbjct: 913 GHPVEKY-AELIYLTNSTRVSQINESNKDKYVSMILQIKVIKIIRTKNGSQMAFVTAADQ 971 Query: 1023 SGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREK-YA 1081 +G +++ F +A ++ +LE I+++ G+V D + GL +T + M ++ R K Y Sbjct: 972 TGNMDLTFFPNAYKRFSSVLEDGNIVLIEGRV---DITRGLAITISKAMLANDVRIKTYY 1028 Query: 1082 RGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPV 1115 L+ + D R + L SG +PV Sbjct: 1029 LRLSKAF------DTSKRRNLEKLMLQNSGNVPV 1056 >UniRef50_Q03SB6 DNA polymerase III catalytic subunit, DnaE type n=18 Tax=Lactobacillus RepID=Q03SB6_LACBA Length = 1121 Score = 590 bits (1522), Expect = e-167, Method: Compositional matrix adjust. Identities = 399/1165 (34%), Positives = 615/1165 (52%), Gaps = 71/1165 (6%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FV L+V S YS++ + LV+ A G ALA+ D + G V FY A A IKP+ Sbjct: 2 FVPLQVFSTYSLLQSTNRIDDLVQTAKKRGYTALALADKNVMYGAVAFYNACRQADIKPL 61 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 +G Q + LA N TGYQ L + +S AYQ G GP+ L +L Sbjct: 62 LGLTLTAQGLNDATQAYDWVFLAQNFTGYQQL-MQLSTAYQVG---GGPVD----LTQLT 113 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 185 + L L+ D L N L ++ D +L PD + Sbjct: 114 KNLSQLTMIAPLDSEIHTLVANDQLAPAQQILHQ--LNDWSVGQLAIGVSPDLTAVSRDH 171 Query: 186 VE-LAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEE 244 ++ L++A P+VA + V +++ D A + AI G T+ DP + ++R Sbjct: 172 LQSLSQATTTPLVALSPVAYLNRDDHFAVTVLRAIDAGETISDPTTEQQVQGTHWLRPAA 231 Query: 245 EMCELFADI--PEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKRAKEGLE 301 E + FA++ A+ T IA VT++ + LPQFPT + ++ DYL +R GL+ Sbjct: 232 EETQRFANVGLTAAVTMTASIAAASTVTLQFQQPQLPQFPTPNQENSRDYLRERCVAGLK 291 Query: 302 ERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPG 361 RL + Y +RL+ EL VI++MGF YFLI+ + + ++ + GPG Sbjct: 292 RRLT------ANHITDATPYQQRLDHELGVIHRMGFDDYFLIIWDVMNFAHQANIQTGPG 345 Query: 362 RGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADM 421 RGS AGSLVAY L IT++DPL +DLLFERFLN ER MPD D+D +R+QV+++V D Sbjct: 346 RGSAAGSLVAYVLAITEVDPLAYDLLFERFLNEERAQMPDIDLDIPDNRREQVLQYVHDK 405 Query: 422 YGRDAVSQIITFGTMAAKAVIRDVGRVLGH-PYGFVDRISKLIPPDPGMTLAKAFEAEPQ 480 YG + V+QIITFGT+AAKA +RDVGRVLG PY D S IP + +TL +A++ + Sbjct: 406 YGHERVAQIITFGTLAAKAALRDVGRVLGMAPYELSD-WSAAIPAELHITLQRAYDQSQR 464 Query: 481 LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQ 540 L + + L A+KLEG+ R+ HA G+V++ + D PL E + +TQ Sbjct: 465 LRNLVADSSRNQLLFATAQKLEGLPRHYSTHAAGIVLSQKPLRDLVPLQPGSE-ELLMTQ 523 Query: 541 FDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDML 600 + K VE GL+K DFLGLR L+I+ AL ++ K+ K +D+ I L+D + + Sbjct: 524 YPKDTVEAVGLLKMDFLGLRNLSILANALALVKKQTGK----IVDLNQIDLNDPATLKLF 579 Query: 601 QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE 660 ET VFQ ES G+K ++++LQPD FE + A+ AL+RPGP+++ +D FI RK+G+E Sbjct: 580 ATGETNGVFQFESSGIKRVLRQLQPDSFELVAAVNALYRPGPMEN--IDTFIRRKNGQEP 637 Query: 661 ISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM 720 ++YP ++L P+L PTYG+++YQEQVMQ+A V+ G+TLG AD+LRRAM KKK + M Sbjct: 638 VTYPA-----DALAPILGPTYGVLVYQEQVMQVASVMGGFTLGQADLLRRAMSKKKKQTM 692 Query: 721 AKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA 780 + F GA++ G +A ++F +++FA YGFN+SH+ AY+ +++Q +LKAHYPA Sbjct: 693 DAMQKQFVAGAQQRGYELAVAQRVFAYIDRFANYGFNRSHAVAYSKLAFQLAYLKAHYPA 752 Query: 781 EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG 840 F A++M + ++ K + E R G+ +LPPDIN +F++ I++G+ +IKG Sbjct: 753 AFYASLMNSVINVGAKTKVYLTEAKRHGVTVLPPDINRSTAYFNLYHSA-IIFGLSSIKG 811 Query: 841 VGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMN 900 V + ++ R++ G F++L R +K +L L+ +GAFD G +RA L+ Sbjct: 812 VRRDFLREVLAERHEHGPFKDLHQFLERIASKYRKADLLNALVYAGAFDHFGHNRAELIA 871 Query: 901 SLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLY 960 +L E I ++ G E + S L E LG Y Sbjct: 872 AL------------PEFISSVELSGDNVELIAALAPKIKSQPDLDLMTKLSQEEAVLGAY 919 Query: 961 LTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLD 1020 L+GHP+ QY +++ R + + ++ R +T V+ R + TKRG + T Sbjct: 920 LSGHPVEQY-QQLGRQLQAQAVSELTANTR---VTVLLYVIKIRQIRTKRGEPMAFVTGS 975 Query: 1021 DRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKY 1080 D + + V +F + + + L D++++V G+V + GL++ A +V D+ K Sbjct: 976 DETADVSVTIFPNQFRQISEWLATDQVIVVRGKV---EQQRGLQIVADQVSLADQIPVKP 1032 Query: 1081 -------------ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARAR 1127 AR I + + D + +L Q L HR G +PV +Y + D + R Sbjct: 1033 VADQHTTPTLPAGARWF-IRVDQQHTDRAIAQQLAQFLTAHR-GPVPVIVYQPQTDEK-R 1089 Query: 1128 LRFGATWRVSPSDRLLNDLRGLIGS 1152 + W + +L L L+G+ Sbjct: 1090 ILPKTQW-LQADAQLKVTLEALMGT 1113 >UniRef50_A4EAI0 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EAI0_9ACTN Length = 1267 Score = 586 bits (1511), Expect = e-165, Method: Compositional matrix adjust. Identities = 367/1032 (35%), Positives = 549/1032 (53%), Gaps = 82/1032 (7%) Query: 62 IKPIVGAD--FNVQCDLLGD---ELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPII 116 IKPI G + F L D EL H+ +LA + GY NL +S+A +G+ P + Sbjct: 119 IKPIFGCEVYFTPDETLARDHKPELYHMILLAKDQEGYVNLMQTVSEAAVQGF-YYKPRV 177 Query: 117 DRDWLIELNEGLILLSGGRMGDVGRSLLRGN-SALVDECVAFYEEHFPDRYFLELIRTGR 175 D L +G+I S G + + + RG+ + F + P +++E+ G Sbjct: 178 TLDNLRRHAKGMICTSACIAGIIPKYIDRGDMEGAIKWAETFRDTFDPGDFYIEIQEHGI 237 Query: 176 PDE-----ESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230 + E +++A+ G+ V+ATND ++ D ++ + I +DDP R Sbjct: 238 TTDNGLTDEQMDRTLIDIAKQVGVKVIATNDFHYLRREDAPVQDVIMCIGMNAKVDDPNR 297 Query: 231 PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGD--MST 288 R + YM++EEEM +F PEA NT+EIA +C V + LP+FP D + Sbjct: 298 MRMTGSEFYMKTEEEMRAMFPYCPEACDNTLEIADKCYVELDWDSIILPRFPLLDPGETH 357 Query: 289 EDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFI 348 E + ++GL + D R ER E E +VI GF YFLIV E++ Sbjct: 358 ESQFRRECEKGLRQHYG---DDWATREIGGVNIKERFEYEYKVICDKGFAAYFLIVAEYV 414 Query: 349 QWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCM 408 QW+KDNG+ VGPGRGS AG++VAYA+ IT DPLE L+FERFL+P+R MPD D+DF Sbjct: 415 QWAKDNGIGVGPGRGSAAGAIVAYAMNITAFDPLENGLMFERFLSPQRTEMPDIDMDFDD 474 Query: 409 EKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG 468 E+R +V+EHV +YG + V+ +IT+ T+ AK I D RVL +P R+SK++ DP Sbjct: 475 ERRLEVVEHVRQLYGPEKVTHVITYSTIKAKQAINDAARVLDYPVYMGQRLSKMVSSDPK 534 Query: 469 MTLAKAFEAE--------PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPT 520 + L + + + P E Y+ D++ + +ID A +EG+TR G HA V+I Sbjct: 535 VKLKQVLDKQPGKEDLFNPDFAEAYKKDDDARRIIDTALSIEGLTRGEGVHACAVLICRD 594 Query: 521 KITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNG 580 + + P D +G +TQ++ V GL+K DFLGLRTLT+I+ A I K Sbjct: 595 PVNEHVPTKLDTKGGVEITQYEGHTVADMGLLKMDFLGLRTLTVISKAKANIKKNFG--- 651 Query: 581 EPPLDIA--AIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALF 638 +DI IP DD + F ++ T VFQ+ES GM IK ++P ++ ++AL+AL+ Sbjct: 652 ---IDIKEEEIPFDDPEIFKLMGSGHTAGVFQVESAGMTATIKNMKPTEYKHVVALIALY 708 Query: 639 RPGPLQSGMVDNFIDRKHGRE-EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVL 697 RPGPL +GMV ++I+R +G+E +SY D L +L TYG ++YQEQVM I+ + Sbjct: 709 RPGPLGAGMVSSYINRMNGKEPAVSYDD------RLDDILGETYGTMVYQEQVMLISVEM 762 Query: 698 SGYTLGGADM-LRRAMGKKKPEEMAKQRSVFAEGAE------------KNGINAELAMKI 744 G++ G +D +R+ + KKK + + + +G++ KN E+A KI Sbjct: 763 CGFSKGESDSRIRKPVAKKKIKLLTSTVLHWEDGSDETTYDHWMNGAIKNNYTREVAQKI 822 Query: 745 FDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDEC 804 +D V +FA Y FNKSHSA YA++ QT WLKAHYP E+MAAV+T+ T+K+V V C Sbjct: 823 WDDVLEFASYAFNKSHSAGYAILVMQTAWLKAHYPHEYMAAVLTSYTGKTDKIVHYVSAC 882 Query: 805 WRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFD 864 G+ +L PD+N F +G + +G+ I+GVG G +AII R GG F+ L D Sbjct: 883 RHDGIPVLSPDVNESGTEFTATKEG-VRFGLAGIRGVGTGVAQAIIAEREAGGPFKTLHD 941 Query: 865 LCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM-----NSLGDALKAADQHAKAEAIG 919 R D+ + NRRV+E LI +GAFD G R +M N+ + + AA + K A G Sbjct: 942 FVERVDSSQANRRVIESLIKAGAFDSTGYPRRQMMHFVDKNNPENIIDAAVKRQKDRASG 1001 Query: 920 QA---DMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYL------ 970 Q DMFG + ++ Q W + L E+E LG+Y++ HP+ + Sbjct: 1002 QTSFFDMFGDVEGSGFEVSVPDPDGQEWDRHLKLSQEKEVLGIYVSDHPLRPFEYALAKA 1061 Query: 971 -----------KEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTL 1019 E++ GG +++ GK + AG+V + VTK G+ +GI L Sbjct: 1062 RDFSFSQIDTGYEVQNPTGGTINQEI---PEGKALWWAGMVSSVSKRVTKNGDPMGIVQL 1118 Query: 1020 DDRSGRLEVMLF 1031 +D G V++F Sbjct: 1119 EDMEGEATVVVF 1130 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 20/45 (44%), Positives = 29/45 (64%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGL 50 FVHL H+ +SM+DG + +V +A L MPA+AITD + G+ Sbjct: 3 FVHLHNHTVFSMLDGATRIQDMVNRAVELSMPAVAITDHGYMYGV 47 >UniRef50_C2D6U4 Possible DNA-directed DNA polymerase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D6U4_9ACTN Length = 1302 Score = 585 bits (1508), Expect = e-165, Method: Compositional matrix adjust. Identities = 387/1094 (35%), Positives = 565/1094 (51%), Gaps = 102/1094 (9%) Query: 62 IKPIVGADFNV---QCDLLG--DELTHLTVLAANNTGYQNLTLLIS-KAYQRGYGAAGPI 115 IKPI G + N+ QC G + HLT+L N GY NL ++S A Q Y P Sbjct: 125 IKPIFGCEANLIPDQCIEKGTPQKRYHLTLLVKNAVGYVNLMKMMSLAANQMMY--YKPR 182 Query: 116 IDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGR 175 L + +EGLI LSG G + + ++ ++ F D ++LE+ G Sbjct: 183 TTFAMLEKYHEGLICLSGCAHGVIAQMIVTQQYDAARAWAQKFKALFGDDFYLEIQDHGV 242 Query: 176 P-------DEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228 E+ V+L + G+ VVATND + D + +I I LD+ Sbjct: 243 SLDSWNGMSEQMIAQRIVQLGKEEGIAVVATNDNHYFHQDDVETRDILSCIGANTHLDEN 302 Query: 229 KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFP---TGD 285 + + Y +SEE+M LFA +PEA+ +V IA +C+ + +LP+FP G+ Sbjct: 303 YQSTLPGSEFYFKSEEQMRALFAWVPEAVDESVRIAAKCSFELDWTHMYLPKFPGLREGE 362 Query: 286 MSTEDYLVKRAKEGLEERLAFLFPDEEERLK-RRPEYDERLETELQVINQMGFPGYFLIV 344 S E R + E+ LA + + + + ER E E VI GF YFLIV Sbjct: 363 TSEE-----RFRSECEQGLARKYGKQWQDVTINGVNVKERFEYEYGVICFKGFADYFLIV 417 Query: 345 MEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDV 404 E+++W+K++G+ VGPGRGS AG++VAYA+ IT DPLE L+FERFL+ ER MPD D+ Sbjct: 418 QEYVRWAKEHGIGVGPGRGSAAGAIVAYAMDITAFDPLENGLMFERFLSLERTEMPDIDM 477 Query: 405 DFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIP 464 DF E+R +V++HV ++YG D V +IT+ T+ AK I D RVLG+P ++SK++ Sbjct: 478 DFDDERRLEVVQHVRELYGSDRVCHVITYSTIKAKQAINDAARVLGYPVATAQKLSKMVS 537 Query: 465 PDPGMTL--------AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVV 516 DP L K P + Y + + +ID AR +EG+ R G HA ++ Sbjct: 538 SDPKTKLKFVLSKTEGKEDMYNPDFVDAYHNNGDEHRIIDAARSIEGIIRGEGVHACAIL 597 Query: 517 IAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMIN--- 573 IAPT + D P D +G +TQ++ V GL+K DFLGLRTLT+I+ AL+ I Sbjct: 598 IAPTPVNDHVPTKLDTKGGVEITQYEGHSVADMGLLKMDFLGLRTLTVISKALDNIRASY 657 Query: 574 -------------KRRAKNGEPPLDI--AAIPLDDKKSFDMLQRSETTAVFQLESRGMKD 618 K K G +DI IP D + F ++ T VFQ+ES GM Sbjct: 658 PDLSKLDSLGDGVKACLKPGATCIDIDPQKIPFTDPRIFQLVGSGRTAGVFQIESEGMTA 717 Query: 619 LIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLE 678 IK ++P F ++AL+AL+RPGPL +GMV ++I+R +GRE + + D + L +L+ Sbjct: 718 TIKNMKPKEFRQIVALIALYRPGPLGAGMVTSYINRMNGREPVVFYD-----DRLSDILD 772 Query: 679 PTYGIILYQEQVMQIAQVLSGYTLGGAD-MLRRAMGKKKPE---------EMAKQRSVF- 727 TYG I+YQEQVMQI+ +SG++ G +D +R+ + KKK E + + + Sbjct: 773 ETYGTIVYQEQVMQISVKMSGFSKGESDSKIRKPVAKKKIALLTSTIFHWENGRDETTYD 832 Query: 728 --AEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAA 785 GA NG E+A +I+D V +FA Y FNKSHSA YA++ QT WLKA++P E+MA+ Sbjct: 833 HWMNGASANGYKKEVAQRIWDDVLEFASYAFNKSHSAGYAILVMQTAWLKAYFPREYMAS 892 Query: 786 VMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGP 845 V+T+ M T K+V + C G+KILPPDIN F G I +G I+GVGE Sbjct: 893 VLTSYMGKTNKIVHYISACNHEGIKILPPDINESGRDFTATPQG-IRFGFAGIRGVGENV 951 Query: 846 IEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM-----N 900 AI++ R K G F L D R ++ + NRRV+E LI +GAFD G R LM N Sbjct: 952 GIAIMQERKKNGPFANLHDFVKRVNSAQANRRVVEALIKAGAFDSCGYPRKQLMGFIDKN 1011 Query: 901 SLGDALKAADQHAKAEAIGQADMFGVLAE-EPEQIEQSYASCQP---WPEQVVLDGERET 956 + + + A +H K ++GQ +F E E+ P W + +L ERE Sbjct: 1012 NPKNIIDEAARHEKDRSMGQLSLFDYFGTVEGSGFEEKIPPADPHDRWEDGFMLSQEREV 1071 Query: 957 LGLYLTGHPINQY-----------LKEIE-------RYVGGVRLKDMHPTERGKVITAAG 998 LG+Y+T HP+ Y L E+E G L+ P GK I AG Sbjct: 1072 LGIYVTDHPLRPYQVALRRSRDFTLSELEESKEVIDEQSGATHLEYKVP--EGKTIHLAG 1129 Query: 999 LVVAARVM--VTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRI--LIVSGQV 1054 + + +TK G ++ I TL+D G++ +++F + LL+ + + L SG+ Sbjct: 1130 MTATGLIQRRLTKTGKQMAIVTLEDMEGQIPLVVFPKVFEASSALLKGEVLESLDSSGEN 1189 Query: 1055 SFDDFSGGLKMTAR 1068 F +G L+ R Sbjct: 1190 IFIKVTGKLERGER 1203 >UniRef50_C3RN28 DNA polymerase III dnaE (Fragment) n=3 Tax=Bacteria RepID=C3RN28_9MOLU Length = 977 Score = 584 bits (1505), Expect = e-165, Method: Compositional matrix adjust. Identities = 361/1030 (35%), Positives = 581/1030 (56%), Gaps = 62/1030 (6%) Query: 8 HLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVG 67 HL+V+S YS + LVKKA+ L ALA+TD N+ G ++ GIK + G Sbjct: 4 HLQVYSSYSFQNSTILIEDLVKKASDLHYEALALTDKDNMYGAMELAKYAKKYGIKAVFG 63 Query: 68 ADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEG 127 + +V+ + E+ L +LA + TGY +L + S+ GA I + L E Sbjct: 64 LEASVE---INHEIYPLLLLARDVTGYFDLVKITSEICLSERGA----ISLEALSLYREH 116 Query: 128 LILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVE 187 L ++S + G + R +L+ + + + ++ F + +++ L G ++ V Sbjct: 117 LFVISACKEGIIERLILKELDSEALKYLELFKNTF-NNFYVGLQNHGIAMQQKLNERLVA 175 Query: 188 LAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMC 247 LA + +P+ TN+VR+++ + ++ A G LD + + + Q Y++S EM Sbjct: 176 LATLQNIPICVTNEVRYLNKDEAFTLDLLQASAKGMMLDLEHQVQ--TDQLYLKSSFEME 233 Query: 248 ELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGLEERLAF 306 LF + + NT +I + CNVT+ + LP++P D DYL + GL++R Sbjct: 234 SLFD--KKYIENTNDIIRLCNVTIPTDQMHLPKYPVPKDGDAGDYLRQLCLVGLKKRF-- 289 Query: 307 LFPDEEERLKRRP-EYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSG 365 + K P EY ERL+ EL VIN+MGF YFLIV ++++++K + + VGPGRGS Sbjct: 290 -------KGKNIPNEYIERLKKELTVINKMGFNDYFLIVFDYVRYAKMHKILVGPGRGSA 342 Query: 366 AGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRD 425 AGSLVAY L IT +DPL +DLLFERFLN ER+SMPD D+DF ++RD+V+ +V + YG + Sbjct: 343 AGSLVAYVLGITGVDPLRYDLLFERFLNEERISMPDIDIDFQDDRRDEVVNYVTEKYGHE 402 Query: 426 AVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAEPQLPE 483 V+QI+TF T K I+D+G+VLG P ++ ++K IP + + + FE Sbjct: 403 HVAQIVTFSTYGPKVAIKDLGKVLGVPLPRLELLTKNIPTNYKNRKSAREVFETSYSFQS 462 Query: 484 IYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDK 543 + D ++ ++ +E + RN HA GVV++ + PL VTQ+ K Sbjct: 463 MVNKDPALRKIMPAVFIVEKLPRNISTHAAGVVLSNDVLDQVVPL-VRGPNNGVVTQYSK 521 Query: 544 SDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRS 603 +E GL+K DFLGL+ LTII++ ++ I AKN + ++I I L DKK+++M+ R Sbjct: 522 DYIEEVGLLKMDFLGLKNLTIIDYIIKDI----AKNHQVEININDIDLQDKKTYEMISRG 577 Query: 604 ETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISY 663 +T +FQLES GMK+L+ ++Q DC +D+IA +ALFRPGP+ + + ++I RK G+E I+Y Sbjct: 578 DTFGIFQLESSGMKNLLVKMQCDCLDDVIAAIALFRPGPMAN--IPSYIARKKGKEPITY 635 Query: 664 PDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQ 723 P E LKP+L+ TYGI+LYQEQ+MQ AQ+++G++L AD+LR+AM KK M Sbjct: 636 P-----LECLKPILKSTYGILLYQEQIMQAAQLVAGFSLAKADILRKAMSKKTASLMKAM 690 Query: 724 RSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFM 783 +S F +G NG + A+K+F+L+E+FA YGFNKSHS Y ++Y +LKA++P EF Sbjct: 691 KSEFIQGGIANGFSELEAVKVFELIERFANYGFNKSHSVVYGYIAYWLAYLKANFPLEFF 750 Query: 784 AAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGE 843 +A+++ + + + + E + G+K+L P IN F V +DG I Y + AIK VG Sbjct: 751 SALLSNEQSSDASKLSCIQEGKKYGVKLLAPSINYSTDRFKV-EDGNIRYSLLAIKNVGY 809 Query: 844 GPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLG 903 +A IEA + G F+++FD +R ++ KLN ++L+ LIM+GAFD +R + +L Sbjct: 810 AGYKA-IEAERQNGTFKDIFDFVSRMESSKLNSKMLDSLIMAGAFDEFKLNRTTIKQNLH 868 Query: 904 DALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTG 963 ++ A+ + I + + ++ + + VL+ E+ LG+YLT Sbjct: 869 KIMEYAELK-NSIGIDEPPILTIVRDNRIK---------------VLEEEKMVLGVYLTM 912 Query: 964 HPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLD--D 1021 HPI ++ + + + + +VI A V +V+V K+G +C +D D Sbjct: 913 HPIALIKNNLKEQIVNLNELSNYIDQPVRVIMALSRV---KVIVDKKGQE--MCFVDGYD 967 Query: 1022 RSGRLEVMLF 1031 +G ++ ++F Sbjct: 968 ETGEVDAVVF 977 >UniRef50_P74750 Ssp dnaE intein (Fragments) n=29 Tax=Cyanobacteria RepID=DPO3A_SYNY3 Length = 1355 Score = 575 bits (1483), Expect = e-162, Method: Compositional matrix adjust. Identities = 331/823 (40%), Positives = 487/823 (59%), Gaps = 55/823 (6%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FV L +HSDYS++DG ++ L+ +A LGMPA+A+TD + G V+ G IKPI Sbjct: 3 FVGLHIHSDYSLLDGASQLPALIDRAIELGMPAIALTDHGVMYGAVELLKVCRGKPIKPI 62 Query: 66 VGADFNVQCDLLGD-ELT------HLTVLAANNTGYQNLTLLISKAYQRGYGAAG----P 114 +G + V + GD E+ H VLA NN GY+NL L + + +G +G P Sbjct: 63 IGNEMYV---INGDIEINKRHRRFHQVVLAKNNQGYRNLVKLTTISNLKGIQGSGIFARP 119 Query: 115 IIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTG 174 I+++ L + EGLI+ S G+V +++L+G+ + +Y+ F D Y+LE+ G Sbjct: 120 CINKELLEQYKEGLIVTSACLGGEVPQAILKGDLDHARQVAKWYKNLFGDDYYLEIQDHG 179 Query: 175 RPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNY 234 ++ V++A+ + +VATND FI +D +AH+ + I G + + KR R Y Sbjct: 180 SVEDRLVNINLVKIAQELDIKIVATNDSHFISCNDVEAHDALLCIQTGKLITEEKRLR-Y 238 Query: 235 SPQQYMRSEEEMCELFAD------IPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMST 288 S +Y++S EEM LF D I A+ANT+E+A + LGE +P +P T Sbjct: 239 SGTEYLKSAEEMHLLFRDHLPDDIIETAIANTLEVADKVEAYSILGEPRIPHYPIPPNHT 298 Query: 289 -EDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347 E Y+ A +GL ERL ER P Y ERLE EL+++ +MGF YFL+V ++ Sbjct: 299 PETYVEDIAWDGLLERLKC-----RERADITPVYKERLEYELRMLEKMGFCTYFLVVWDY 353 Query: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 I++++D+G+PVGPGRGS AGSLVAY +KIT++DP+ L+FERFLNPER SMPD D DFC Sbjct: 354 IKYARDHGIPVGPGRGSAAGSLVAYCMKITNIDPVHHGLIFERFLNPERKSMPDVDTDFC 413 Query: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIP--- 464 +++RD++IE+V YG D V+QIITF M +KAV++DV RVL PY D+++K+IP Sbjct: 414 IDRRDEMIEYVTQKYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYAESDKMAKMIPVSR 473 Query: 465 --PDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 P + EPQ Y+ + VK IDMA ++EG + G HA GVVI+ + Sbjct: 474 GKPAKLKVMISDQTPEPQFKARYDNEPWVKKWIDMAIRIEGTNKTFGVHAAGVVISSEPL 533 Query: 523 TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMI---------- 572 PL + +G +TQ+ DVE GL+K DFLGL+ LT + A+E++ Sbjct: 534 DQIVPLQKNNDGA-VITQYYMEDVEAMGLLKMDFLGLKNLTTLQRAVELVAETKGIELDL 592 Query: 573 -----NKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDC 627 +R+A +P D KK+ +L+ + +FQLES+GMK +++ L+P Sbjct: 593 DDLPLQERKALQIRARTGSKKLPDDVKKTHKLLEAGDLEGIFQLESQGMKQIVRDLKPSG 652 Query: 628 FEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQ 687 ED+ +++AL+RPGPL +G++ FI+RKHGREEISY QH+ L+P+L TYG+++YQ Sbjct: 653 IEDISSILALYRPGPLDAGLIPIFINRKHGREEISY-----QHKLLEPILNETYGVLVYQ 707 Query: 688 EQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDL 747 EQ+M++AQ L+ Y+LG AD+LRRAMGKKK EEM K R+ F +G+ K+G+ + +A +FD Sbjct: 708 EQIMKMAQDLADYSLGEADLLRRAMGKKKAEEMQKHRAKFVDGSTKHGVPSRIAENLFDQ 767 Query: 748 VEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTAD 790 + KFA Y S V Y L + E +V + D Sbjct: 768 MVKFAEYCL--SFGTEILTVEYGPLPIGKIVSEEINCSVYSVD 808 Score = 189 bits (480), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 132/407 (32%), Positives = 212/407 (52%), Gaps = 30/407 (7%) Query: 751 FAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLK 810 A FNKSHS AYA V+YQT +LKA+YP E+MAA++TA D+ EKV + C +MG+ Sbjct: 930 IAANCFNKSHSTAYAYVTYQTAYLKANYPVEYMAALLTASSDSQEKVEKYRENCQKMGIT 989 Query: 811 ILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKG--GYFRELFDLCAR 868 + PPDIN HF + I++G+ A++ +GEG IE II AR+ F+ L D C + Sbjct: 990 VEPPDINRSQRHFTPLGEA-ILFGLSAVRNLGEGAIEQIITARDNSEEKRFKSLADFCTQ 1048 Query: 869 TDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLA 928 D + +NRR +E LIM+GAFD + +R L++ L + A + AK + GQ ++F L Sbjct: 1049 VDLRVVNRRAIETLIMAGAFDGVQSNRNQLLHDLELVIAWAQKRAKEKETGQLNIFDSLT 1108 Query: 929 EEPEQIEQSYA---------SCQPWPE---QVVLDGERETLGLYLTGHPINQYLKEIERY 976 E I+ A S P E Q L E+E LG Y++ HP+ ++ R Sbjct: 1109 -AGESIKAKEAANNGFEQEPSAPPVAEFSLQEKLQLEKEHLGFYVSEHPLKS-VQRSARL 1166 Query: 977 VGGVRLKDMHPTERGKVITAAGLVVAARVMVTKR-GNRIGICTLDDRSGRLEVMLFTDAL 1035 + + L D+ + + ++A ++VA + ++TK+ G + TL+D SG+ E ++F Sbjct: 1167 LSPINLVDLDQYKVRQKVSAVAILVAVKKIITKKNGQPMAFLTLEDMSGQSEAVVFPSNY 1226 Query: 1036 DKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQI-D 1094 ++ Q +L + ++ G+V D L V D++ E + + + LT ++I + Sbjct: 1227 ERLQDVLIEGSQQMIWGKVDRRDDQYQLI-----VEDLEPVEE--VKMVMLDLTPQEIAN 1279 Query: 1095 DQLLNRLRQSLEPH----RSGTIPVHLYYQRADARARLRFGATWRVS 1137 RL+Q L+ H IPV + +RFG + V+ Sbjct: 1280 TSTQARLKQILQSHAPQKEQMKIPVVACINEGPTKHFIRFGENYWVN 1326 >UniRef50_B2GC21 DNA-directed DNA polymerase III alpha subunit n=3 Tax=Lactobacillus fermentum RepID=B2GC21_LACF3 Length = 1099 Score = 570 bits (1470), Expect = e-161, Method: Compositional matrix adjust. Identities = 383/1128 (33%), Positives = 600/1128 (53%), Gaps = 87/1128 (7%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FV L V S YS+++ + A LV A G A+ + D L G V F + AG+ P+ Sbjct: 3 FVPLAVKSMYSLLEAPVRPAELVAVAKERGYQAVGLVDARVLYGAVNFVRRANQAGLHPV 62 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 +G + + +T+LA GYQNLT L ++A A P+ D L E + Sbjct: 63 IGVSLPLT---FAEGTLDVTLLAKGAVGYQNLTRLSTRAMTDR--ANQPLTIED-LREGS 116 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 185 + L+++ ++ +G S A + E + + L+ R D ++ Sbjct: 117 DDLVVIVAPQLMLLGVS--EQTYAQLGEVADYLGIN------LDFTAAERQDLQA----- 163 Query: 186 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 245 +AE GLP++A V +++ D+ A ++ AI G T++DP + + + ++R EE Sbjct: 164 --VAERCGLPLIAFEPVEYLNEDDYFATQVLRAIKAGHTIEDPLKASQRTGRHWLRPAEE 221 Query: 246 MCELFADIPEALA--NTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGLEE 302 + + A A TV +A+RC V LP FPT DYL + + GL + Sbjct: 222 VAAAYRAAGLAEAAAQTVAVAERCQVHFADQTPVLPAFPTPAGQGVADYLRELCQRGLAK 281 Query: 303 RLAFLFPDEEERLKRRP-EYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPG 361 R +L P EY RLE EL VI+QMGF YFLIV + + ++ + + GPG Sbjct: 282 R----------KLAGDPAEYQARLEHELTVIHQMGFDNYFLIVWDLMNFAHQHQILTGPG 331 Query: 362 RGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADM 421 RGS AGSLVAYAL ITD+DPL++ LLFERFLNPER MPD D+D +R++V+ ++ Sbjct: 332 RGSAAGSLVAYALAITDVDPLQYGLLFERFLNPERAQMPDIDLDLPDNRREEVLNYLHHH 391 Query: 422 YGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIP--PDPGMTLAKAFEAEP 479 YG + V+QIITFG++ K V+RDV RV P VD +S++I P TLA E+ Sbjct: 392 YGHERVAQIITFGSLGTKQVLRDVSRVFNLPKYQVDSLSQVIDRVKGPHQTLADLLESAQ 451 Query: 480 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYC-DEEGKHPV 538 + + + V L+++A KLEG+ R+ HA GVV+A + PL +E G V Sbjct: 452 PVQNLARDSKLVACLLEVAAKLEGLPRHDSIHAAGVVLAAEPLIKTVPLQAGNEPGAMLV 511 Query: 539 TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598 TQF+K VE GL+K D LGLR LT + AL +I++ +P D+ I L+D+ + Sbjct: 512 TQFEKDTVESLGLLKIDLLGLRNLTTVETALNLIHQH-----QPDFDLTHIALNDRPTLA 566 Query: 599 MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658 + R +T+ +FQ ES G++ + L PD FE+++A+ AL+RPGP+ + +++FI RK G+ Sbjct: 567 LFDRGQTSGIFQFESSGIRQTLVNLHPDNFEEIVAVNALYRPGPMDN--INHFIARKKGQ 624 Query: 659 EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718 E ++ P + L P+L PTYGI++YQEQVMQ+A V+ G++LG AD+LRRAM KKK Sbjct: 625 EAVNLPA-----KELAPILAPTYGILVYQEQVMQVAAVMGGFSLGEADLLRRAMSKKKLA 679 Query: 719 EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778 MA + F GA K G +A ++F +++FA YGFN+SH+ AY+ ++++ +LK H+ Sbjct: 680 TMASMKEAFLAGANKRGYPNAVAEQVFAYIDQFANYGFNRSHAVAYSKMAFEMAYLKVHF 739 Query: 779 PAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAI 838 PAEF+AA+M + D T KV E ++G+ P IN + D E+ G+ I Sbjct: 740 PAEFLAALMETNPD-TSKVWAYFSEAKQLGITTHGPAINQSQERVSLVDQ-ELWLGLDMI 797 Query: 839 KGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAAL 898 KG+ I AIIE RN+ G +++L DL R D K + LI +GA D LG +RA Sbjct: 798 KGLRRDFIRAIIEERNQHGPYQDLPDLVNRLDAKWHKEDLFVPLIDAGALDHLGYNRA-- 855 Query: 899 MNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLG 958 + + LKA + A+ +G M V+A+ E +P V L E LG Sbjct: 856 --EMAEGLKAILEGAEYAGLGLG-MAPVVAQRNE-----------YPLAVRLAREHAVLG 901 Query: 959 LYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNR-IGIC 1017 YL+GHP++QY +++ + + + P +R +++ +V R + TKR ++ + Sbjct: 902 TYLSGHPVSQY-QDLRTKLKLPTVAQLRPKQRVRLVL---MVTRMRKVTTKREHKPMAFL 957 Query: 1018 TLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD----- 1072 T D +G +EV +F + + L + I +++ + + G +++ A +V D Sbjct: 958 TASDETGAVEVTIFNRLFTQLEGELRVNGIYLITAKT--EQREGQVQLLADQVTDAQVVN 1015 Query: 1073 --IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLY 1118 + A ++ L + + D + ++L +G +PV +Y Sbjct: 1016 RELHPADHRWVLRLPSGVAQTTVTDGI-----KALAKEHAGNVPVVIY 1058 >UniRef50_C5QT78 DNA polymerase III, alpha subunit n=5 Tax=Staphylococcus RepID=C5QT78_STAEP Length = 1069 Score = 569 bits (1466), Expect = e-160, Method: Compositional matrix adjust. Identities = 361/1133 (31%), Positives = 598/1133 (52%), Gaps = 100/1133 (8%) Query: 8 HLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVG 67 HL +H+ Y +++ + ++ KA G ALAITD L G KFY A A I PI G Sbjct: 4 HLNIHTAYDLLNASLRIEDVINKAKNEGYTALAITDTHVLYGFPKFYDACIAADIHPIFG 63 Query: 68 ADFNVQCDLLGDELTHL--TVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 +L D L + VLA NN G + L L S A + P+ +WL + Sbjct: 64 MTL-----ILTDGLYKVETVVLAQNNEGLKALYQL-SSAIKMKEKEEVPL---EWLKRYD 114 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 185 + LI++ DV + L+ A D + H + Sbjct: 115 DNLIII----FKDVESTHLQILEAFNDHTHVYMN-----------------------HTS 147 Query: 186 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 245 ++ + + V R+++ D D AI D LD +++ ++ + E Sbjct: 148 DDIIDRKK---VWLQSARYLNREDADTISALQAIRDNSKLDLINESKDFG--EHFPDQNE 202 Query: 246 MCELFADI-PEALANTVEIAKRCNVTVRLGEYFLPQF--PTGDMSTEDYLVKRAKEGLEE 302 + + D+ E + NT I C + + LPQF P G+++ E YL Sbjct: 203 LKNISDDVDEEVIKNTQTIVDLCQAELVYHQSLLPQFVTPNGEVAKE-YL---------- 251 Query: 303 RLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGR 362 + L E +Y ERL+ E ++I MGF YFLIV + I ++K + V VGPGR Sbjct: 252 -WSVLIDKLNEWNLHNDQYLERLKHEYEIITNMGFEDYFLIVSDLIHYAKTHDVMVGPGR 310 Query: 363 GSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMY 422 GS AGSLV+Y L IT +DP++F+LLFERFLNPERV+MPD D+DF +R++VI++V D Y Sbjct: 311 GSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRREKVIQYVQDKY 370 Query: 423 GRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLP 482 G VS I+TFG + A+AV RDVGR++G ++ ISKLIP G+TL +A++ + Sbjct: 371 GDLHVSGIVTFGHLLARAVGRDVGRIMGFDETTLNEISKLIPHKLGITLDEAYQQD-NFK 429 Query: 483 EIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFD 542 + + DM++KLEG+ R+ HA G++I + FAPL + G +TQ+ Sbjct: 430 AFVHRNHRNELWFDMSKKLEGLPRHTSTHAAGIIINDQPLYKFAPLTLGDTG--LLTQWT 487 Query: 543 KSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQR 602 ++ E GL+K DFLGLR L+II+ + + K+ +D+ IP DD+K F +L + Sbjct: 488 MTEAERIGLLKIDFLGLRNLSIIHQIVTQV----KKDLNIDIDVETIPFDDRKVFKLLSQ 543 Query: 603 SETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEIS 662 +TT +FQLES G++ ++KRLQP+ FED++A+ +L+RPGP++ + +I R+H ++ Sbjct: 544 GDTTGIFQLESDGVRSVLKRLQPEHFEDIVAVTSLYRPGPMEE--IPTYITRRHDPSKVE 601 Query: 663 YPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAK 722 Y H L+P+L+ TYG+I+YQEQ+MQIA + ++ G AD+LRRAM KK + Sbjct: 602 Y-----LHPDLEPILKNTYGVIIYQEQIMQIASKFANFSYGEADILRRAMSKKNRAVLES 656 Query: 723 QRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEF 782 +R F GA+ NG + +++ +IFDL+ KFA YGF ++H+ +Y+ ++Y +LK +YP F Sbjct: 657 ERQHFVNGAKDNGYDEQMSKQIFDLILKFADYGFPRAHAVSYSKIAYIMSYLKVYYPNYF 716 Query: 783 MAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVG 842 A +++ + + +K ++DE + ILPP+IN + + G I +G IKGVG Sbjct: 717 YANILSNVIGSEKKTANMIDEAKHQKINILPPNINESHWFYKATSQG-IYLSLGTIKGVG 775 Query: 843 EGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSL 902 ++ I++ R G F++ FD R + R++LE LI+ GAFD +RA L+ ++ Sbjct: 776 YQSVKLIVDERYNNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDNFDKNRATLLQAI 835 Query: 903 GDALKAADQHAKAEAIGQADM-FGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYL 961 L + Q DM F +L P+Q+ Y + P++++ + E+E LG Y+ Sbjct: 836 DQVLDTTSD------VEQDDMLFDILT--PKQV---YEDKEELPDKLLSNYEKEYLGFYI 884 Query: 962 TGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDD 1021 + HP+ + E ++Y+G +L + + ++ + R TK G + TL+D Sbjct: 885 SKHPVEKEF-EKKQYLGIYKLSNAQNFQ--PILVQFDTIKQIR---TKNGQNMAFVTLND 938 Query: 1022 RSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR-EKY 1080 ++ ++F D +Y+ + + + IV G+ F+ + L++ ++++I+ + EK Sbjct: 939 GMTLMDGVIFPDKFKRYEASISNEEMFIVIGK--FEKRNQQLQLIINQIIEINTYKNEKI 996 Query: 1081 ARGLAISLTDRQIDDQLLNRLRQSLEPHRSG---TIPVHLYYQRADARARLRF 1130 + + + L + +++ + +SG + V+ + +R ++ RL F Sbjct: 997 NASKKVIIRNAH---HLPSNIQELIMNEKSGDQHLLEVNAFNERNNSMNRLGF 1046 >UniRef50_Q5WEF1 DNA polymerase III alpha subunit DnaE n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WEF1_BACSK Length = 1095 Score = 565 bits (1457), Expect = e-159, Method: Compositional matrix adjust. Identities = 382/1163 (32%), Positives = 609/1163 (52%), Gaps = 90/1163 (7%) Query: 11 VHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADF 70 V+S+YS++ + LV+ A G AL++TD L G V F+ + AG+KP++G + Sbjct: 8 VYSEYSLLQSTNRVDELVQAAKEAGYTALSLTDRHVLYGAVPFFQSCRKAGLKPLLGLEV 67 Query: 71 NVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRD-WLIELNEGLI 129 V+ D +E+ + ++A N GY+ L ++ + G+ I+ + W + Sbjct: 68 TVRLD---EEIIPVRMVAKNEEGYRQL---VAHSTSLGFQTKQAAIELETWKANSTACFV 121 Query: 130 LLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELA 189 + + L L AF E + G D H ++ A Sbjct: 122 FIPKEAFVAAKGNWLHFWERLAGGLEAFIE-----------LAGGESD-----HELIQFA 165 Query: 190 EARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCEL 249 A +P VA RF+ D +++ AI G T + + + ++ + + E Sbjct: 166 NAHQIPCVAAPPTRFLRKEDAPVYQLVRAIGAGTTTTHLELEEGWQ-RWHLPTANSLKER 224 Query: 250 FADIPEALANTVEIAKRCNVTVRLGEYFLPQ----FPTGDMSTEDYLVKR----AKEGLE 301 F + +AL +A++ E +LP+ P D T + KR ++GL+ Sbjct: 225 FPE--KALLQARALAEKV-------EPYLPEEKPRIPAYDGLTVEQADKRLETLCQQGLK 275 Query: 302 ERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPG 361 R + E + RLE EL +I + G+ YFLIV +F+ ++K +G+ GPG Sbjct: 276 ARYKAV----------SVEAERRLEHELAIIAERGYSSYFLIVADFVGYAKKSGILTGPG 325 Query: 362 RGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADM 421 RGS A S+VAY L ITD+DPL DLLFERFLNPER S+PD DVDF +RD+VI +V + Sbjct: 326 RGSSASSIVAYTLFITDVDPLAHDLLFERFLNPERASLPDIDVDFPDYRRDEVIAYVRER 385 Query: 422 YGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISK-LIPPDPGMTLAKAFEAEPQ 480 +G D V+Q++TFGT AA+A IRDVG+ L + FVDR++K LIP + E Q Sbjct: 386 FGHDRVAQVLTFGTFAARAAIRDVGKALSIRHTFVDRVAKSLIPASLSLN-------EAQ 438 Query: 481 LPEIYEADE--EVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538 +++ E E+ L+ A+++EG+ R+A HA GV+I+ + + L +G H V Sbjct: 439 EKGVFKGLESPELDELLFFAKQIEGLPRHASTHAAGVIISDKPLNNKTALQLGIDG-HAV 497 Query: 539 TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598 TQ D + GLVKFDFLGLR LT++ L++I + L++ IPL+DK +F Sbjct: 498 TQADMDSLARLGLVKFDFLGLRNLTLLERMLKVIEQEEGV----ALNLQHIPLNDKATFQ 553 Query: 599 MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658 +LQ+ ++T +FQLES GM+ ++K+LQP FED++A AL+RPGP+ + +I KHG Sbjct: 554 LLQQGKSTGIFQLESAGMRQVLKQLQPSQFEDIVATSALYRPGPM--AFIPEYIRGKHGH 611 Query: 659 EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718 + P HESL+P++EPT+G+++YQEQ+MQ+ Q + Y+L AD+ RRA+ KK+ + Sbjct: 612 TQAIVP-----HESLRPIVEPTFGVLVYQEQIMQVVQATANYSLAEADLFRRAISKKQHD 666 Query: 719 EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778 + ++R F A +NG E A IF L+E+FA YGF KSH+ AY+ +SY +L+ H+ Sbjct: 667 VIIQERHQFIHRAVENGFLPEEAEAIFSLIERFANYGFPKSHATAYSFISYWLAYLRVHF 726 Query: 779 PAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAI 838 PA F AA+ ++ N EK+ ++E + G+++LPP + F + ++G+I +G+ I Sbjct: 727 PAAFFAALFSSVWQNHEKLYSYINEAKKEGIRVLPPSVCKSGLLFEL-ENGQIRFGLLPI 785 Query: 839 KGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAAL 898 GV + II R K LF A + +N+RV+E LI +GA D G RA L Sbjct: 786 SGVNVQAVNEIISKRRKNSD-SNLFMFYAHVASTAVNKRVMEALIKAGALDEFGQSRATL 844 Query: 899 MNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLG 958 + +L D +A + ++ +F + P +Y P + L+GERE LG Sbjct: 845 LGNL-DKAEAFVEQVRSFKASSGGLFTIKPAVP-----AYLDVTPSTKMEDLEGEREVLG 898 Query: 959 LYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICT 1018 YL+GHPI L+ + + G + L + P+ K + AG+V+ + +VTK+G + T Sbjct: 899 FYLSGHPIENELERLAPF-GRIPLAECIPSR--KPVRIAGMVIDVKKIVTKKGEAMAFLT 955 Query: 1019 LDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDE-AR 1077 L D SG + F A Y+ L ++ + G ++ G + + D+ + + Sbjct: 956 LSDESGECSCVAFPQAWKVYEGLFAPHALVFLEG--VLEERQGKTQFIIHKAADVLQLNK 1013 Query: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVS 1137 K + L I LT + L+ L+ L G+ V LY ++ AR RL + V+ Sbjct: 1014 NKKKQTLYIRLTADKDQPTRLSDLKYVLS-QDVGSTQVILYREKEQARTRL--ADEYSVA 1070 Query: 1138 PSDRLLNDLRGLIGSEQVELEFD 1160 P+ + L L+ + G E + L+ D Sbjct: 1071 PTRKTLQLLKQMFGEENIVLKSD 1093 >UniRef50_C9B7L3 DNA polymerase III alpha subunit n=18 Tax=Enterococcus RepID=C9B7L3_ENTFC Length = 1104 Score = 563 bits (1450), Expect = e-158, Method: Compositional matrix adjust. Identities = 377/1165 (32%), Positives = 608/1165 (52%), Gaps = 81/1165 (6%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F L + YS++ + V++A G +LAITD L G +FY G++PI Sbjct: 3 FPQLYTITSYSLLQSTIRIREYVQEAKKQGYTSLAITDKDVLYGAPEFYRICVEEGVQPI 62 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 +G + + ++ L A + GYQ L L S+ + + + D L Sbjct: 63 IGLHLSYTYE---EKNYGLLAYAKDEIGYQQLMKLSSRKMIQEKLDLAEMTETDHL---- 115 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDE--ESYLH 183 ++ + + + E F +++ L PD+ E Y + Sbjct: 116 -AFVVPANHSVSEA----FNKEDNFFGHWQFLLENVFTRNFYIGLTENT-PDQLPEWYQY 169 Query: 184 AAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDG--FTLDDPKRPRNYSPQQYMR 241 E + A + + + + A E+ I DG L++ + Y+ Sbjct: 170 VIKE-----NYSLCALHPIASLQQEELFALEVMKHIKDGSQIPLENLSASLPLTANGYLL 224 Query: 242 SEEEMCELF--ADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKEG 299 SE+EM + F A + +A+ +A+ + + + LP +P + K+A E Sbjct: 225 SEQEMIKRFEKAGLSQAVIGAQRLAESISFEFQFHQKLLPHYPVPNG-------KQAGEY 277 Query: 300 LEERLAFLFPDEEERLK-RRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPV 358 L E + E R+ EY ERL+ EL VI+QMGF YFLIV + + ++ N + Sbjct: 278 LRE---LCYSQVERRITDYTKEYQERLDYELSVIHQMGFDDYFLIVWDVMAFAHRNKIVT 334 Query: 359 GPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHV 418 G GRGS AGSLVAY L+ITD+DPLE+DLLFERFLNPER +MPD D+D +R++V+ +V Sbjct: 335 GAGRGSAAGSLVAYVLEITDVDPLEYDLLFERFLNPERFTMPDIDLDIPDNRREEVLNYV 394 Query: 419 ADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAE 478 + YG+ ++QI TFGTMAAK V+RD RV G +R SK IP +TL +A++ Sbjct: 395 REKYGQYHMAQIATFGTMAAKMVLRDAARVFGLSQSEANRWSKAIPNQLKITLTQAYKTS 454 Query: 479 PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLY--CDEEGKH 536 QL E+ +A E+ + L A LEG+ R+ HA GVVI+ + + PL DE Sbjct: 455 HQLVELVQASEKNQLLFKTAVILEGLPRHVSTHAAGVVISDKNLLELVPLQRGSDEAF-- 512 Query: 537 PVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKS 596 +TQ+ ++VE GL+K DFLGLR L+II++ L+ + +R + E + + +PL+D K+ Sbjct: 513 -LTQYTMNEVEAIGLLKMDFLGLRNLSIIDFTLKAV--KRVEGYE--IRLKEMPLNDAKT 567 Query: 597 FDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKH 656 + QR ET+ VFQ ES G++++++RL P+ ED+ A+ AL+RPGP+Q+ +D FI RK Sbjct: 568 LLLFQRGETSGVFQFESAGIRNVLRRLGPENIEDIAAVNALYRPGPMQN--IDTFIARKK 625 Query: 657 GREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKK 716 G+E I YPD +SL P+L+ TYG+I+YQEQ+MQIA ++G+TLG +D+LRRA+ KKK Sbjct: 626 GKEAIRYPD-----DSLIPILKNTYGVIVYQEQIMQIASTMAGFTLGQSDILRRAVSKKK 680 Query: 717 PEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKA 776 + + +++S F GA + G + + A +++ +EKFA YGFN+SH+ AY+ V +Q +LKA Sbjct: 681 KDVLDEEKSHFVSGALQQGYSEKTAATVYEYIEKFANYGFNRSHAFAYSFVGFQMAYLKA 740 Query: 777 HYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIG 836 H+P F ++M + NT K+ + E + LK+ P IN F + + EI +G+ Sbjct: 741 HHPGAFFTSLMNSVRHNTSKLKEYIAEARKNKLKLSSPSINQSNSSFELVNKEEIRFGLT 800 Query: 837 AIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRA 896 AIKG+ +E I+ R + G F+ + R D + L +L+ L G FD L P+R Sbjct: 801 AIKGIRRDFVEDILNERKQNGPFQSVDQFLIRIDKRWLKLELLQSLTAVGVFDELSPNRK 860 Query: 897 ALMNSLGDALKAADQHAKAEAI----GQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952 LM D K + I G D+ G++A + E++ + + L Sbjct: 861 QLM---------LDLEGKIQNIVYSGGSLDLLGIMALKEEEVAD-------YTLEERLKL 904 Query: 953 ERETLGLYLTGHPINQYLKEIERYVGGVRL-KDMHPTERGKVITAAGLVVAARVMVTKRG 1011 E E LG+YL+GHP + + R V+L D+ P + ++ ++ R + TK+G Sbjct: 905 EEEYLGIYLSGHPAEGFDR--LRLAKQVQLITDIVPNQPVNLLV---MIKEVREIRTKKG 959 Query: 1012 NRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVM 1071 + D SG + V +F KY+ L DR++ V G+ ++ L++ Sbjct: 960 ELMAFVEGTDSSGEISVTVFPTLYRKYRNLFAVDRVIFVQGRSEISKYNQELQLIGESFA 1019 Query: 1072 DIDEAREKY-ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRF 1130 D ++ +Y ++ + +T+ + D +++ +L+ + H G IPV +Y+++ + L Sbjct: 1020 DPNQLEAQYPSQTCYLRITEEREDPEIMKQLQVIFQKH-PGYIPVVMYHEKTQRKVVLS- 1077 Query: 1131 GATWRVSPSDRLLNDLRGLIGSEQV 1155 A W V S + L L+G + V Sbjct: 1078 DAYW-VDDSKSIKGQLIYLLGEDNV 1101 >UniRef50_Q6G8M4 DNA polymerase III subunit alpha n=62 Tax=Staphylococcus RepID=DPO3A_STAAS Length = 1065 Score = 562 bits (1448), Expect = e-158, Method: Compositional matrix adjust. Identities = 362/1096 (33%), Positives = 588/1096 (53%), Gaps = 99/1096 (9%) Query: 8 HLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVG 67 +L +H+ Y +++ K V+ A + + ALAITD L G KFY A IKPI G Sbjct: 4 YLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFG 63 Query: 68 ADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEG 127 V G VLA NN G ++L L S+ A + + L + Sbjct: 64 MTIYVTN---GLNTVETVVLAKNNDGLKDLYQLSSEIKMN----ALEHVSFELLKRFSNN 116 Query: 128 LILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYL-HAAV 186 +I++ ++GD R + V +E H ++Y+ H ++ Sbjct: 117 MIIIFK-KVGDQHR-----------DIVQVFETH----------------NDTYMDHLSI 148 Query: 187 ELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEM 246 + +G V +V + D D AI D LD ++ + +E+E+ Sbjct: 149 SI---QGRKHVWIQNVCYQTRQDADTISALAAIRDNTKLDLIHDQEDFGA--HFLTEKEI 203 Query: 247 CELFADIPEALANTVE-IAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGLEERL 304 +L DI + V+ IA++C+ ++ + LPQ+ T D S + YL + L+ Sbjct: 204 NQL--DINQEYLTQVDVIAQKCDAELKYHQSLLPQYETPNDESAKKYLWRVLVTQLK--- 258 Query: 305 AFLFPDEEERLKRRPEYD---ERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPG 361 K YD ERL+ E +VI MGF YFLIV + I ++K N V VGPG Sbjct: 259 -----------KLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVMVGPG 307 Query: 362 RGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADM 421 RGS AGSLV+Y L IT +DP++F+LLFERFLNPERV+MPD D+DF +R++VI++V + Sbjct: 308 RGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERVIQYVQEK 367 Query: 422 YGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQL 481 YG VS I+TFG + A+AV RDVGR++G ++ IS LIP G+TL +A++ + Sbjct: 368 YGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLGITLDEAYQID-DF 426 Query: 482 PEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQF 541 + + + + +KLEG+ R+ HA G++I + ++APL + G +TQ+ Sbjct: 427 KKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTG--LLTQW 484 Query: 542 DKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQ 601 ++ E GL+K DFLGLR L+II+ L + K N +DI IP DD+K F++L Sbjct: 485 TMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGIN----IDIEKIPFDDQKVFELLS 540 Query: 602 RSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEI 661 + +TT +FQLES G++ ++K+L+P+ FED++A+ +L+RPGP++ + +I R+H + Sbjct: 541 QGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEE--IPTYITRRHDPSK- 597 Query: 662 SYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMA 721 VQ+ H L+P+L+ TYG+I+YQEQ+MQIA + ++ G AD+LRRAM KK + Sbjct: 598 ----VQYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLE 653 Query: 722 KQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAE 781 +R F EGA++NG + +++ +IFDL+ KFA YGF ++H+ +Y+ ++Y +LK HYP Sbjct: 654 SERQHFIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNY 713 Query: 782 FMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGV 841 F A +++ + + +K +++E + G+ ILPP+IN + + + +G I IG IKGV Sbjct: 714 FYANILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEG-IYLSIGTIKGV 772 Query: 842 GEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNS 901 G ++ I++ R + G F++ FD R + R++LE LI+ GAFD G R+ L Sbjct: 773 GYQSVKVIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTL--- 829 Query: 902 LGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYL 961 L+A DQ + + D F P+Q+ Y + P+ ++ E+E LG Y+ Sbjct: 830 ----LQAIDQVLDGDLNIEQDGFLFDILTPKQM---YEDKEELPDALISQYEKEYLGFYV 882 Query: 962 TGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDD 1021 + HP+++ ++Y+ +L + + ++ V R TK G + TL+D Sbjct: 883 SQHPVDKKFVA-KQYLTIFKLSNAQNNK--PILVQFDKVKQIR---TKNGQNMAFVTLND 936 Query: 1022 RSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDI---DEARE 1078 L+ ++F + KY++LL + + IVSG+ FD ++ E+ + +E + Sbjct: 937 GIETLDGVIFPNQFKKYEELLSHNDLFIVSGK--FDHRKQQRQLIINEIQTLATFEEQKL 994 Query: 1079 KYARGLAISLTDRQID 1094 +A+ + I QID Sbjct: 995 AFAKQIIIR-NKSQID 1009 >UniRef50_D0MJZ2 DNA polymerase III, alpha subunit n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MJZ2_RHOM4 Length = 1607 Score = 558 bits (1439), Expect = e-157, Method: Compositional matrix adjust. Identities = 315/728 (43%), Positives = 447/728 (61%), Gaps = 41/728 (5%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 RF HL H+ YS++DG A+ L+++AA + A+AITD NL G+ +FY GI+P Sbjct: 3 RFSHLHCHTQYSLLDGAARIQTLLERAAEYEIEAVAITDHGNLFGVPEFYRTAEKIGIQP 62 Query: 65 IVGADFNVQCDLLGD--ELT--HLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 I+G +F + D E T H +LA N TGY+NL L S +Y GY P ID + Sbjct: 63 IIGCEFYLTPTSRHDRNERTRYHQVLLAKNETGYRNLIKLSSLSYLEGY-YYKPRIDHEL 121 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 180 L + +EGLI + G++ +++L + +Y E F + Y++E+ G P+++ Sbjct: 122 LTQYHEGLIATTCCLQGEIPQTILHKGEEAARKLFEWYLELFGEDYYIEIQDHGLPEQKK 181 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 + A G+ V+ATNDV ++D +DF+ H++ + + G + DP R R + Q Y+ Sbjct: 182 INAILLRWAREYGVRVIATNDVHYVDRTDFEPHDVLLCLQTGKDMSDPSRLRFDNDQFYL 241 Query: 241 RSEEEMCE-LFADIP-----EALANTVEIAKRCNVTVRLGEYFLPQFP-----TGDMSTE 289 +S EM + L +DI E +ANT E+A +C + G+ +P +P GDM Sbjct: 242 KSPAEMRQALLSDIEPRLVDEMMANTGEVADKCRFQLPTGKLLMPHYPIPPEYNGDMDA- 300 Query: 290 DYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQ 349 YL EG R P E ERLE EL +I +MGF GYFLIV +F Sbjct: 301 -YLRDLVFEGARRRYGDPLPHE---------VAERLEHELAIIKKMGFAGYFLIVQDFTT 350 Query: 350 WSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCME 409 ++ GV VGPGRGS AGS VAY L IT++DPL++DLLFERFLNPERVSMPD D+DF Sbjct: 351 AARRLGVRVGPGRGSAAGSAVAYCLGITNIDPLKYDLLFERFLNPERVSMPDIDIDFDDR 410 Query: 410 KRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGM 469 R +VI++V YGR+ V QIITFGTM AK IRDV RVLG P DRI+KLIP P + Sbjct: 411 GRGKVIDYVVQKYGRENVCQIITFGTMGAKMAIRDVARVLGIPLAEADRIAKLIPDGPKV 470 Query: 470 TLAKAFEAEPQLPEIYEA-DEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPL 528 TLA+A+E P+L + E+ D +++ L+ A LEG R+ G HA GV+IAP +++D+ P+ Sbjct: 471 TLAQAYEEVPELRALKESNDPQIRKLLHYAEVLEGSVRHTGVHAAGVIIAPGRVSDYVPV 530 Query: 529 YC--DEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586 ++ TQ+D +E GL+K DFLGL+TLTI+N AL++I +N +D+ Sbjct: 531 AVAKGKDNDTVTTQYDGKWIEEFGLLKMDFLGLKTLTILNDALQLIK----ENHGIEIDL 586 Query: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 IPLDD K+F++ QR ET A+FQ ES GM++ +++L+P +D+IA+ AL+RPGP+ Sbjct: 587 DQIPLDDPKTFELFQRGETVAIFQFESEGMREWLRKLKPTSIDDLIAMNALYRPGPMD-- 644 Query: 647 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 ++ N+I RKHG E + YP H L+PVL+ TYGI +YQEQVMQ+AQV++GYTLG AD Sbjct: 645 LIPNYIARKHGLEPVEYP-----HPLLEPVLKNTYGIPIYQEQVMQMAQVMAGYTLGQAD 699 Query: 707 MLRRAMGK 714 +LRR + + Sbjct: 700 LLRRCVAE 707 Score = 283 bits (724), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 171/480 (35%), Positives = 258/480 (53%), Gaps = 33/480 (6%) Query: 707 MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 ++ +MGKKK EEM K R +F GA + G++AE A +FD++EKFAGYGFNKSHSAAY++ Sbjct: 1123 VVHNSMGKKKVEEMKKHREIFVAGAAERGVDAETANAVFDMMEKFAGYGFNKSHSAAYSI 1182 Query: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 V+YQT +LKA+YPAEFMAA MT++M +T+K+ ++DE RMGL++LPP IN HF V Sbjct: 1183 VAYQTAYLKANYPAEFMAAAMTSEMGDTKKLAVVLDEARRMGLELLPPSINRSQAHFTV- 1241 Query: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 +DG I +G+GAIKGVG G IEAI++AR K G FR +FDL D + +N++VLE L +G Sbjct: 1242 EDGRIRFGLGAIKGVGLGAIEAILKAREKHGPFRTIFDLIRHLDLRVVNKKVLESLARAG 1301 Query: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPE 946 A D L HRA L+ ++ A++ A + GQA +FG + QPW Sbjct: 1302 ALDELEGHRAQLVEAIDLAVQYAQKVQADRMAGQASLFGESGTRTALPPPNLPVVQPWSR 1361 Query: 947 QVVLDGERETLGLYLTGHPINQYLKEIERYV------------------GGVRLKDMHPT 988 L ERE +G Y+TGHP+ Y E+ + G + T Sbjct: 1362 ARCLKEERELIGFYVTGHPLEAYRAEVNAFATTTLAELSRTLEEADMPRNGSTNGHTNGT 1421 Query: 989 ERGKVITAA-------GLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQL 1041 G A G++ + + + G + +++D +G+ E+++F+ L++ Sbjct: 1422 TNGHAYRPARPRHRICGIITEVQRRIGRNGRPLAFASIEDFTGQGELVIFSSVLERVMPY 1481 Query: 1042 LEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRL 1101 LE D +++V GQV G +K+ E+ + + R++ L + L Q+ + L+R Sbjct: 1482 LEVDAVVLVEGQVEVR--GGSVKVLVDELWPMWKVRDELVEALVVQLDLEQVRPEQLDRF 1539 Query: 1102 RQSLEPHRSGTIPVHLYYQRAD---ARARLRFGATWRVSPSDRLLNDLRGLIGSEQVELE 1158 H +G ++ D R RL V +D L+ L G+E + LE Sbjct: 1540 HALCREH-AGRCKLYFDLLSPDFPGGRQRL-LSRRCLVELNDTLMQQTLRLFGAEAIRLE 1597 >UniRef50_C8WRV2 DNA polymerase III, alpha subunit n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRV2_ALIAD Length = 992 Score = 555 bits (1429), Expect = e-156, Method: Compositional matrix adjust. Identities = 328/903 (36%), Positives = 517/903 (57%), Gaps = 44/903 (4%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL VHS +S + L + +V+ A A MPA+AITD + G + FY GI PI Sbjct: 3 FVHLHVHSAFSFRESLLRVEDIVRAAKACEMPAVAITDTNAMYGALSFYRLARAEGISPI 62 Query: 66 VGADFNVQCDLLGDE----------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPI 115 +G ++ +G+E L + VLA GY+ LT L + A + P Sbjct: 63 LGMQVSLA---VGEEEAAPGRAAEWLDTVVVLAMGMEGYRRLTRLATSAR---WKRPVPH 116 Query: 116 IDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRTG 174 + L E ++GL++L GG + L RG + + + P + F+E+ G Sbjct: 117 VTLRELAESSDGLVVLCGGPESRLFDFLARGEAEAAERRLLQVAGAVPVGQLFVEVQDHG 176 Query: 175 RPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNY 234 E L + ++LA+ +P+VAT+DVR++ D H + + R Sbjct: 177 LRREREGLPSLIQLAKRYDVPLVATHDVRYLAREDASWHRAYAQLARADAAE-----RFA 231 Query: 235 SPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVK 294 + + + ++ EM + FA++PEAL T EIA+ C + + L + +P++ T D D +++ Sbjct: 232 TDEFHFATKAEMADRFANLPEALGRTAEIAEMCALDLPLHQVRMPRYATKDGRPADEVLR 291 Query: 295 RAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDN 354 A R PE +ERLE EL VI +MG+ YFL+V +FI+ + Sbjct: 292 EAARAGAARRYGALS---------PEVEERLERELDVICRMGYADYFLVVADFIRHAHQQ 342 Query: 355 GVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQV 414 G+ GPGRGS AGSLVAYAL+ITD+DP+ LLFERFLNP RVS+PD D DF E+R +V Sbjct: 343 GISTGPGRGSAAGSLVAYALRITDVDPIRHKLLFERFLNPARVSLPDIDTDFEFERRGEV 402 Query: 415 IEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKA 474 I +V + YGRD V+QI TFGT+ A+A +RD GR+ G VDR++KL+P +L A Sbjct: 403 IRYVIEKYGRDRVAQIGTFGTLQARAALRDAGRMTGADPALVDRLAKLVPGVVHASLDGA 462 Query: 475 FEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEG 534 ++ E+ + + + L + A+++E + + HA GV+I+P I D+ PL + Sbjct: 463 YQESAAFRELVDGSPDARRLFEAAKRIEDLPHHTSIHAAGVIISPEPIADWIPLDLAADD 522 Query: 535 KHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDK 594 PVT + DVE G VK DFLGL+TLT+I+ L+ I KR +D + DK Sbjct: 523 T-PVTAYPMEDVEALGFVKMDFLGLKTLTLIDRCLDSIRKRTGVT----IDWRQVDEGDK 577 Query: 595 KSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDR 654 ++ +L R++T VFQLES GM+ +++ L+P +D+IA+++L RPGP+++ + F D Sbjct: 578 ATYALLTRADTNGVFQLESAGMRRVLRELRPTSLDDVIAVISLNRPGPMEN--IPAFCDA 635 Query: 655 KHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK 714 KHGR ++YP H L+P+L TYG+I+YQEQ+MQIA ++G++L AD+LRRA+ K Sbjct: 636 KHGRRPVTYP-----HPDLEPILADTYGVIVYQEQIMQIASRMAGFSLAEADLLRRAVSK 690 Query: 715 KKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWL 774 KK E + ++R+ F +G + G + E A +++DL+ +FA YGFN+SH+AAYA+++++T +L Sbjct: 691 KKREILDEERARFVDGCVRRGYSEETAREVYDLIVRFADYGFNRSHAAAYAVLAFRTAYL 750 Query: 775 KAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYG 834 +AH+ +F+AA++T M +K+ + R G+++ PP + + V +DG + G Sbjct: 751 RAHFLPDFLAALLTLSMGAPDKIRLYEQDARRHGIQVRPPSVLRSERGYTVEEDGSLRAG 810 Query: 835 IGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPH 894 + +I+ VGE ++ I+ R++ F L D R + + +NR+ L+ L +GA D P Sbjct: 811 LISIRNVGEAAVDHILSLRSEKP-FASLVDFLRRIEPRIVNRKALDSLFAAGALDEFFPE 869 Query: 895 RAA 897 A+ Sbjct: 870 NAS 872 >UniRef50_C2E227 Possible DNA-directed DNA polymerase n=9 Tax=Lactobacillus RepID=C2E227_9LACO Length = 1040 Score = 552 bits (1422), Expect = e-155, Method: Compositional matrix adjust. Identities = 362/1067 (33%), Positives = 566/1067 (53%), Gaps = 62/1067 (5%) Query: 9 LRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA 68 L+ S +S++ LVK A G +LA+TD GLV FY A +KP++G Sbjct: 7 LQTLSSFSLLKSPILIDDLVKDAVDKGYSSLALTDINVTYGLVDFYLAAKKVNLKPLLGM 66 Query: 69 DFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKA-YQRGYGAAGPIIDRDWLIELNEG 127 + + L +A NN GY+N+ L S + G ++ L + Sbjct: 67 TIRLNGIVDQAHRYDLISIAKNNQGYKNILRLSSAINLKTDNGDERKVLTLKQLAKYLSD 126 Query: 128 LILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL-IRTGRPDEESYLHAAV 186 + + + R L N L + + ++ P L L G+ + Y+ A Sbjct: 127 QVFIVPANITSELRYLAENNEKLGSDFIRELQKIIPSSSDLYLGAYAGK--NQPYIDYAK 184 Query: 187 ELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEM 246 +A+ LP+ AT DV+++ +SD + AI G L D Y+R+ E+ Sbjct: 185 SMAKQFNLPLAATEDVQYLQASDHFLVKTLRAIEQGQKLVDTSSLALQKGSHYLRTSGEL 244 Query: 247 CELF--ADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKRAKEGLEER 303 + I AL N +IA C +V + LP++ ++ YL + ++GL +R Sbjct: 245 VSAYNECSILSALHNAAKIADECKASVTFTQPELPKYKQSFAPDSKIYLRQLVQKGLAKR 304 Query: 304 LAFLFPDEEERLKRRPE-YDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGR 362 + PE Y +RL+ EL++I+QMGF YFLIV + I ++ + GPGR Sbjct: 305 F---------NGQPIPEIYQKRLDYELKIIDQMGFDDYFLIVWDVINYAHSVDITTGPGR 355 Query: 363 GSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMY 422 GS AGSLVAY+L IT++DP++++LLFERFLNP R MPD D+D +RD++I+++ + Y Sbjct: 356 GSAAGSLVAYSLAITEVDPIKYNLLFERFLNPARAQMPDIDLDIPDNRRDEIIKYMFEKY 415 Query: 423 GRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIP-PDPGMTLAKAFEAEPQL 481 G D +QI+TFGT+AAK +RD RV G + + IP +TLA+A++ L Sbjct: 416 GMDHAAQILTFGTLAAKQALRDCARVFGLTTIQASKFTHAIPFSKSKITLAQAYQESKAL 475 Query: 482 PEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQF 541 + A E K L A +LEG+ R+A HA G+VI+ I A L G PVTQ Sbjct: 476 QLLVNASELNKLLFKTAMRLEGIPRHASIHAAGLVISDKSIAQIAGLQAGTLG-IPVTQQ 534 Query: 542 DKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQ 601 K+ VE GL+K DFLGLR LTI+ +E++ AK+G LD IPLDD K+ + Q Sbjct: 535 TKAHVEELGLLKIDFLGLRNLTILGDTIELL----AKDG-IKLDPKRIPLDDIKTLQLFQ 589 Query: 602 RSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEI 661 + +T AVFQ ES+G+K++++RL PD FED++A+ AL+RPGP+Q+ +D+FI+RK G+E I Sbjct: 590 KGKTDAVFQFESQGIKNVLRRLHPDSFEDVVAVNALYRPGPIQN--IDHFINRKQGKEPI 647 Query: 662 SYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMA 721 +YPD SL +L+PTYGI++YQEQVMQ AQ+++G++LG AD+LRRAM KKK + + Sbjct: 648 TYPD-----SSLAKLLQPTYGILVYQEQVMQTAQIMAGFSLGEADLLRRAMSKKKQDLID 702 Query: 722 KQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAE 781 ++R F GA KNG A K++ +E+FA YGFN+SH+ AY+ +++ +LK HYPA Sbjct: 703 QEREKFIAGAVKNGHPQATASKVYAYIEQFANYGFNRSHAVAYSKIAFWLAYLKVHYPAA 762 Query: 782 FMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGV 841 F A++ + N K + + G+KIL PDIN+ +++ +G+I G+ AIKG+ Sbjct: 763 FFTALLNSVSANRVKAGEYITQAQEAGVKILAPDINNSQTDYYLV-NGQIQVGLKAIKGL 821 Query: 842 GEGPIEAIIEARNKGGY---FRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAAL 898 + RN G F L D + D K L+ + + +I +G FD++ +R L Sbjct: 822 RVDFL------RNIAGLPKNFTSLADFLRKIDAKFLSEQAIAAMIKAGCFDKIDENRKML 875 Query: 899 MNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWP---EQVVLDGERE 955 + + + ++ + E + + + G+ ++EQ+ P P E+ + E E Sbjct: 876 LANCKEIVENIKFTGQNETLSEG-LGGI------RLEQA-----PAPNSNEKATM--EEE 921 Query: 956 TLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIG 1015 LG T PI K ER+ L E G A G ++ +++ TK+G+ + Sbjct: 922 VLGFSTTKTPILVVQKYAERF-NAQALNSFTVNETG---IAVGKLIKLKLIRTKKGDTMA 977 Query: 1016 ICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGG 1062 T D S E+ +F + +L++ +I ++ + D + G Sbjct: 978 FSTFRDASSEQEITIFPGIYNNISNILKEGQIYLLGIRTQSDRYDAG 1024 >UniRef50_C0QPU4 DNA polymerase III subunit alpha n=2 Tax=Aquificales RepID=C0QPU4_PERMH Length = 1574 Score = 548 bits (1411), Expect = e-154, Method: Compositional matrix adjust. Identities = 307/718 (42%), Positives = 433/718 (60%), Gaps = 45/718 (6%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL +H+ YS++DG K L +KA G A+ +TD N+ G V+FY GIKPI Sbjct: 5 FVHLHLHTHYSLLDGAIKIPELAQKAVEYGYKAVGMTDHGNIFGAVQFYQEMKKVGIKPI 64 Query: 66 VGADFNVQC-----------DLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGP 114 +G + D+L D+ HL + A + TG++NL L S AY G+ P Sbjct: 65 IGMEAYFTSNRFEKKGKGSEDILSDKNYHLILHAKDKTGFKNLMKLSSLAYTEGF-YYKP 123 Query: 115 IIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTG 174 ID + L +EGLI + G + L +G + ++ F D + E+ G Sbjct: 124 RIDWELLERYHEGLICQTACLKGFIPHLLSQGKFDEAYQQAKRLKDIFGDDLYFEIQING 183 Query: 175 RPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNY 234 P++E +ELA G+ +VATND +++ D AH++ A+ T+ + K+ Sbjct: 184 LPEQEVANKGIIELARKLGVKIVATNDSHYLNPEDQKAHDVIKALQMKKTVAELKKEGKV 243 Query: 235 SPQQ--YMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE---YFLPQFPTGDMSTE 289 + EEM F EAL NTVEIA++CNV + + Y P++ + E Sbjct: 244 FQVTGLHFTKPEEMYRKFKGYEEALRNTVEIAEKCNVEIETADTRGYLFPKYQIPGLDRE 303 Query: 290 -------DYLVKRAKEGLEERLAFLFPDEEERLKRRP--EYDERLETELQVINQMGFPGY 340 +Y K + EGLE RL+ E++ L + EY ERL E+ VI QMGFP Y Sbjct: 304 ATEEEKVEYFEKLSWEGLERRLS-----EKKDLPKSKIEEYRERLRYEIDVIKQMGFPEY 358 Query: 341 FLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMP 400 FLIV +FI ++K NG+PVGP RGS AGSLVAY L ITD+DPL+ L+FERFLNP+R+SMP Sbjct: 359 FLIVQDFINYAKKNGIPVGPARGSAAGSLVAYTLGITDVDPLQHGLIFERFLNPDRISMP 418 Query: 401 DFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIS 460 D DVDFCME R +VIE+V + YG +V+QIIT+ M +K VIRDV R LG Y DRI+ Sbjct: 419 DIDVDFCMENRGKVIEYVKEKYGEQSVAQIITYNFMKSKMVIRDVARALGFSYSEADRIA 478 Query: 461 KLIPPDP----GMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVV 516 K+I P P +T+ + EA P+ ++YE DE+V+ LID+ARKLEG+ R+ G HA GVV Sbjct: 479 KMILPGPVQGSTLTIDENLEANPEFRKLYETDEKVRELIDLARKLEGLARHTGIHAAGVV 538 Query: 517 IAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRR 576 IAP + +F P+Y D++G TQFD + +E GLVK DFLGL+TLT +N+ +I +R Sbjct: 539 IAPGPLDEFVPVYVDKDGT-KATQFDMNTLETLGLVKMDFLGLKTLTELNYMKNLIKERH 597 Query: 577 AKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVA 636 + ++ +P+DD+ + +LQ +TT VFQLES+GM+DL+ RL+PD F+++IA++A Sbjct: 598 GID----INFHKLPIDDQNVYRLLQSGKTTGVFQLESKGMQDLLVRLKPDKFDEIIAILA 653 Query: 637 LFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIA 694 LFRPGPL SGMVD+FIDRKHGR+ + YP E +K +LE TYG+ L + ++ +A Sbjct: 654 LFRPGPLMSGMVDDFIDRKHGRKPVEYP-----FEEVKEILEETYGLCLTGDTLITMA 706 Score = 283 bits (723), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 153/425 (36%), Positives = 252/425 (59%), Gaps = 5/425 (1%) Query: 685 LYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKI 744 +YQEQ+M +A +LSG+T+ AD LR+A+GKKK + MAK + F GA + G + K+ Sbjct: 1106 IYQEQIMFMANILSGFTMAEADTLRKAIGKKKADVMAKMKDRFISGAVERGFDKVKIEKL 1165 Query: 745 FDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDEC 804 +D +EKFA Y FNKSHS AYA ++Y T ++K +YP EF A ++ + +N K + L+ + Sbjct: 1166 WDDIEKFASYSFNKSHSTAYAYLTYWTAYIKTYYPEEFFAVKLSIE-NNDNKFLNLLLDM 1224 Query: 805 WRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFD 864 G+K+LPPDIN +F + D G+I +G+ IK VGE + I+E R + G ++++FD Sbjct: 1225 EDFGIKLLPPDINRSRSNFSIEDKGKIRFGLSRIKNVGEQSAKLIVEERERNGDYKDIFD 1284 Query: 865 LCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF 924 + R D+K LN+RVLE LI +GAFD G R ++ S+ AL A + + +A GQ +F Sbjct: 1285 IAERMDSKALNKRVLEALIKAGAFDFSGVDRGVMLASVDRALSAGQKAREKKASGQNSLF 1344 Query: 925 GVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKD 984 G++ + + +Y + +P E+ L+ E+E LG Y++GHP+N Y KE++ YV +++ Sbjct: 1345 GLMPQIEDGNGFAYENAEPISEKEKLNFEKEVLGFYISGHPLNAYKKELQGYV--IKINS 1402 Query: 985 MHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEK 1044 + + G + AG++ + T+ G+ + I T+ D +G L+V +FT+ ++ LE+ Sbjct: 1403 LAERKTGDKVRIAGVISDIKKKKTRSGSTMAILTVQDETGILDVRVFTEKMED-TSFLEE 1461 Query: 1045 DRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQS 1104 DRI+I+ G V + + M A V I E K R + L + + + ++R+ Sbjct: 1462 DRIVIIEGTVEISEEQERISMNALSVEPI-ENINKQVRTVKFRLPKEKALNGVALKIREI 1520 Query: 1105 LEPHR 1109 E +R Sbjct: 1521 CEKYR 1525 >UniRef50_B3WE63 DNA-directed DNA polymerase III, alpha subunit n=8 Tax=Lactobacillus RepID=B3WE63_LACCB Length = 1098 Score = 548 bits (1411), Expect = e-154, Method: Compositional matrix adjust. Identities = 383/1163 (32%), Positives = 614/1163 (52%), Gaps = 84/1163 (7%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F L+VHS+Y+++ + L+ A + G A+A+TD + GLV+FY AG+KP+ Sbjct: 3 FTQLQVHSNYTLLHSPLALSDLISAAKSRGYSAIALTDTNVVYGLVEFYRQAKAAGLKPL 62 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 +G + + L V+A NN GY L L IS A P+ D L+ L Sbjct: 63 LGMQIAI-------DDAKLLVIAKNNQGYHQL-LKISTQIML---ATSPVAFAD-LLPLT 110 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALV----DECVAFYEEHFPDRYFLELIRTGRPDEESY 181 GL+ ++ + D S +A+V + VAF +E D E + G +E++ Sbjct: 111 -GLVAIT---LPDSPFS-----AAVVANDHNRAVAFLQEL--DNKQPEAVYVGL--DEAH 157 Query: 182 LHAAV-ELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 L + A ++ L ++A +V + D +D ++ AI DG L+ + ++ Sbjct: 158 LDTPLPTFATSQQLHLMALGNVLYRDPTDAFTQKVMAAIGDGSQLNFRDPVLTDAGPWWL 217 Query: 241 RSEEEMCELF--ADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGD-MSTEDYLVKRAK 297 + + F A + A+ N +IA + +VT+ + LP + T D ++++DYL K A+ Sbjct: 218 KPPADASAPFVAAGLQAAVDNAAQIADQTDVTITFKQPQLPHYQTPDQLASKDYLTKLAQ 277 Query: 298 EGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVP 357 EGL R F D+ Y +RL+ EL VI +MGF YFL+V + + ++ + Sbjct: 278 EGLANR----FHDQPIPTT----YQQRLQYELDVIIKMGFADYFLVVWDVMNYAHKVNIM 329 Query: 358 VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEH 417 G GRGS AGSLV+YAL IT++DP+ +DLLFERFLNP R MPD D+D +R ++I++ Sbjct: 330 TGAGRGSAAGSLVSYALAITEVDPIAYDLLFERFLNPARAQMPDIDLDIPDNRRGELIQY 389 Query: 418 VADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEA 477 V D YGR+ ++QIITFGT AK IRDV RV G + S+ IP M L A++ Sbjct: 390 VHDKYGRNHMAQIITFGTFGAKQAIRDVARVFGMSQFESNTWSRAIPNLLHMDLKTAYDQ 449 Query: 478 EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHP 537 L + + + L A LEG+ R+ HA G+V++ +TD L +G Sbjct: 450 SQPLKNLVADSPKNRMLFQTALALEGLPRHYSTHAAGIVLSEEPLTDTVALQPSGDGLEQ 509 Query: 538 VTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSF 597 TQ K DVE GL+K DFLGL+ L I+ A + + + +P IPL+D+ + Sbjct: 510 -TQVPKDDVEALGLLKMDFLGLKNLNILAAASHFVTRDTGRTFDP----KQIPLNDQPTL 564 Query: 598 DMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHG 657 + R +T VFQ ES G+K+++++L+P FED++A+ AL+RPGP+++ +D FI RK+G Sbjct: 565 ALFARGDTNGVFQFESAGIKNVLRKLRPTDFEDVVAVNALYRPGPMEN--IDTFIARKNG 622 Query: 658 REEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKP 717 +E I+YPD +L+ +L+PTYG+++YQEQVMQ+A V+ G++LG AD+LRRAM KKK Sbjct: 623 QEPIAYPD-----PALEKILKPTYGVLVYQEQVMQVASVMGGFSLGEADLLRRAMSKKKS 677 Query: 718 EEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAH 777 +A ++ F EGA K G A ++ +++FA YGFN+SH+ AY++V++ +LK H Sbjct: 678 SVLAAEQDKFIEGAVKQGFPEATAKTVYAYIDRFANYGFNRSHAVAYSMVAFWLAYLKVH 737 Query: 778 YPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGA 837 PA F AA+M A M+N K+ V E + +L PDIN+ F ++ DG+I +G+ + Sbjct: 738 DPAAFFAALMNASMNNLPKLRTYVQEAKARQVALLGPDINTSNGGFKLS-DGKIRFGLLS 796 Query: 838 IKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAA 897 +KG+ EAI AR K G F++ DL R + K L + LI++GAFD +RA Sbjct: 797 VKGMRRDFSEAIFTAR-KNGPFKDFRDLLQRLEPKWLKADNFKPLILAGAFDSFDDNRAQ 855 Query: 898 LMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETL 957 + +L + + + A +F VLA +P + + P L+ E L Sbjct: 856 TIANLDELINSVKL-----AGNDVGLFSVLAPKPIVVPE-------MPAGERLEEEANVL 903 Query: 958 GLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGIC 1017 G+YL+GHP+++Y +Y L ++ G+ + LV + + TK G + Sbjct: 904 GVYLSGHPVDKYAPLKTQYT----LVNVVDLAEGRTVDILLLVRHIKRIRTKTGKPMAFV 959 Query: 1018 TLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077 D +G + + +F + ++ +E D +++V+G+V + + L++ + D Sbjct: 960 DGQDATGTVSLTVFPNLYPTLEK-IETDMVVLVNGRV--EKRNDDLQLIVNRIQDAAPLL 1016 Query: 1078 EKYARG-LAISLTDRQIDDQ--LLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATW 1134 E + L I L +D + LL +L+ + G IPV ++ + + Sbjct: 1017 EALPKAQLFIRLDADNVDARTDLLKKLQTA-----HGPIPV--ITVDTTSKESVLLDKRY 1069 Query: 1135 RVSPSDRLLNDLRGLIGSEQVEL 1157 V+ L+ DL G+ V L Sbjct: 1070 WVTADTSLMADLESRFGAANVVL 1092 >UniRef50_C9RMS0 DNA polymerase III, alpha subunit n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RMS0_FIBSS Length = 1285 Score = 546 bits (1408), Expect = e-153, Method: Compositional matrix adjust. Identities = 328/827 (39%), Positives = 469/827 (56%), Gaps = 40/827 (4%) Query: 302 ERLAFLFPDEEERL-KRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360 ERL + FPDE+ + +R+ EL I M GY LIV +FI WS+++G+PVGP Sbjct: 406 ERLKWRFPDEDFKFPAHETNVGKRMYKELNCIRNMNVAGYLLIVWDFINWSREHGIPVGP 465 Query: 361 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420 GRGS AGSLV Y + ITD+DPL FDLLFERFLNPERVSMPD D DF R +VI++V D Sbjct: 466 GRGSAAGSLVTYIIGITDIDPLTFDLLFERFLNPERVSMPDIDTDFADRDRGRVIQYVTD 525 Query: 421 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP--------------- 465 YG++ V QIIT+G + +KAVI DV RVLG P I+KL P Sbjct: 526 KYGKECVGQIITYGMLKSKAVITDVARVLGIPPAEAKAITKLFPQRTLNFSLKQAWTGKD 585 Query: 466 DPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDF 525 G L + EP L + + + L D+A++LE + R G HA GVVI PT I + Sbjct: 586 KKGNNLEDGYSPEP-LQAMIGSRASYQNLWDVAKRLEDLPRQTGVHACGVVITPTPIYNL 644 Query: 526 APLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLD 585 APLY PV +DK E GL+K DFLGL L+II ++M+ + R L Sbjct: 645 APLYRAAPEDTPVVMYDKHYAEDIGLLKMDFLGLINLSIIQDTVKMVEQNR----NIKLV 700 Query: 586 IAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQS 645 + IP+DDK +F++L + TT VFQ ES GM+ ++ L+P D+IA+ AL+RPGP+ Sbjct: 701 MNKIPIDDKATFELLGKGLTTTVFQFESPGMQKYLRELKPTRIFDLIAMNALYRPGPIDQ 760 Query: 646 GMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGA 705 + +FI RK+G+EEI H L+ VL TYG+I+YQEQVM++AQ+L GY+LGGA Sbjct: 761 --IPHFIARKNGKEEID-----CYHPDLEQVLGETYGVIVYQEQVMKLAQILGGYSLGGA 813 Query: 706 DMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYA 765 D +RR M KK PE+MAK F + G + + K++D V F GY FNKSH+AAYA Sbjct: 814 DNIRRIMAKKMPEKMAKLEPEFFQKCLDKGYDKAMIQKVWDAVLPFCGYAFNKSHAAAYA 873 Query: 766 LVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHV 825 V+YQT +LK HY E+MAA MT+ M TE V ++ EC R+G+ +L P+IN+ L F Sbjct: 874 YVAYQTAYLKTHYGPEYMAASMTSKMGKTEDTVTIILECKRLGIPVLSPNINTSLGVFSA 933 Query: 826 NDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKK---------LNR 876 N G+I+YG+ I+ VG +E ++ R + G ++++FD C R + LN+ Sbjct: 934 NTKGQILYGLAGIRNVGIAVVEDVVAERERRGIYKDIFDFCKRVTEYQAAQPEKRPPLNK 993 Query: 877 RVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF--GVLAEEPEQI 934 +VLE LIM+GA D L RA ++ AL+ A + + +A GQ +F G A P Sbjct: 994 KVLECLIMAGALDDLPGSRAVQCATVDRALEVAMRSQEDKAKGQVSLFDLGGPAAMPNTA 1053 Query: 935 EQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVI 994 E + W +L+ ER LGL+L+GHP++++ E+ + +D G + Sbjct: 1054 E-VLEEAEEWTAMEMLNKERSVLGLFLSGHPLDEFRPELTGFTSCSLSEDEITRYVGDTV 1112 Query: 995 TAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQV 1054 G+V+ R + TKRG+ IG + D G +E+ D ++ + + D ++V G + Sbjct: 1113 VVGGVVIRMRSIETKRGDTIGSGAIQDFQGEIEMFFKKDVWERLRDTVSVDDRVLVKGVL 1172 Query: 1055 SFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRL 1101 G ++ EV+ +D R + + T + D+ L++L Sbjct: 1173 EQQRDRDGYQIIVEEVIQLDRVRCDMVDYIHANFTVGMLTDEFLDKL 1219 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 94/306 (30%), Positives = 152/306 (49%), Gaps = 20/306 (6%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG---- 61 FVHL+ HS++S++ A+ ++ AAA PA+A+TD + G+++ G Sbjct: 3 FVHLQTHSEFSILQASARLDDILAAAAAENAPAVALTDHGAMFGILEIQTRGKELNKKRK 62 Query: 62 ------IKPIVGADFNVQCDLLGDE----LTHLTVLAANNTGYQNLTLLISKAYQRG-YG 110 +K + G V + LT+L N GY NL ++S Y+ G Sbjct: 63 EQGLPPVKTVYGCHIYVDTPSASQKDPTTFERLTLLVENEKGYYNLLRIVSYRYEDGERW 122 Query: 111 AAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLE 169 A P + + + E EG+I ++G G+++ G +L E + E F D ++ Sbjct: 123 AEIPSVPLETINEFKEGIIAIAGDYFSRYGQNVASGRDSLALEYMDRLNEIFDHDHLYIS 182 Query: 170 LIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPK 229 + G P ++ VELA+ G VVA DV +I D +H+I I TL+ + Sbjct: 183 VCDNGIPQQKHVNEFNVELAKKYGREVVAVGDVHYIKPEDATSHKILRCISLKVTLNGFE 242 Query: 230 RPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVR--LGEYFLPQFPTGD-- 285 R + + Y R+E+EM ELF IP A+ NTV+IA+RCN TV+ +G+ F P+F D Sbjct: 243 DKRFPTEKFYFRTEKEMVELFGHIPGAIENTVKIAERCNFTVKTGIGDEFWPRFKIPDEF 302 Query: 286 MSTEDY 291 +++E+Y Sbjct: 303 LASEEY 308 >UniRef50_C5RC77 DNA-directed DNA polymerase III, alpha chain n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RC77_WEIPA Length = 1122 Score = 546 bits (1406), Expect = e-153, Method: Compositional matrix adjust. Identities = 380/1182 (32%), Positives = 603/1182 (51%), Gaps = 98/1182 (8%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 V L+ + +S++ L+K G A+A+TD+ L G+ FY A A I+PI Sbjct: 1 MVPLQTMTAFSLLRSPMTPQQLIKAVQDKGYQAVALTDYNVLYGMYDFYQAAQAADIQPI 60 Query: 66 VGADFNVQCDLLGDELTH---LTVLAANNTGYQNLTLLISKAYQ-----------RGYGA 111 +G + +L+G + + + L N GY NL L IS A + Y + Sbjct: 61 LG----LTAELIGLQSSQSYPVIFLVENQVGYHNL-LQISSAINTQNEKMTLDDLKSYLS 115 Query: 112 AGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELI 171 II L + E +LL G + +L++ +AL D F R Sbjct: 116 GLYII----LPSIGELAVLL--GTEPERAMTLVKTVTALADATHVFLGVSLDMR------ 163 Query: 172 RTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRP 231 E+ L + ELA+ G ++A +V + ++SD + ++ + G + + Sbjct: 164 -------EAMLQSIKELAQNTGTRIIANENVLYPNASDQFSAQVIQKLGQGEIISNVGLA 216 Query: 232 RNYSPQQYMRSEEEMCELFAD--IPEALANTVEIAKRCNVTVRLGEYFLPQFPTGD-MST 288 + + Y++ + + + +A+ NT IA V + +P++ T S+ Sbjct: 217 QKQAATAYLKESTDWANEYNSRGLSDAVENTDWIAAHSYVVLEQSSVTVPKYETPQGQSS 276 Query: 289 EDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFI 348 DYL + A GL RL + D Y RL+ EL++IN++GF YFLIV + + Sbjct: 277 SDYLAELATTGLTNRLHDMAVDATP-------YKARLKEELRIINELGFADYFLIVWDVL 329 Query: 349 QWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCM 408 ++ + GPGRGS AGSLVAY L ITD+DP+ +DLLFERFLNPER MPD D+D Sbjct: 330 NYAHKKSIRTGPGRGSAAGSLVAYVLWITDVDPIAYDLLFERFLNPERHQMPDIDIDIPD 389 Query: 409 EKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG 468 +R+++++++ + YG + V+QIITF TMA +AVIRDV RV G +D +SK +P Sbjct: 390 NRREEILDYLHEHYGHERVAQIITFSTMAQRAVIRDVARVFGLNPTQIDNLSKSMPRGTA 449 Query: 469 MTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPL 528 A + P + + + + L A KLEG+ RNA HA GVV++ + ++ P+ Sbjct: 450 SLQASYESSLPFRNALLDLPVDGQLLYQTALKLEGLPRNASLHAAGVVLSAEPLANYMPV 509 Query: 529 YCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAA 588 ++G+ VTQ K VE GL+K DFL L L I++ A+ I K IA+ Sbjct: 510 QLGDDGR-LVTQLPKGPVEALGLLKMDFLALSNLNILDIAIREIQK---IPDHESFSIAS 565 Query: 589 IPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMV 648 + LDD+ + + Q T VFQ ES GMK+++++L+PD FED++A ALFRPGP+Q+ + Sbjct: 566 VSLDDQATLRLFQNGLTNGVFQFESGGMKNILRQLRPDSFEDIVAANALFRPGPMQN--I 623 Query: 649 DNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADML 708 +F+ RKH E+ PD S+ +L PTYGII+YQEQVM++A+ +G++LG AD+L Sbjct: 624 PHFVARKHQEEKQDVPDA-----SMAEILAPTYGIIVYQEQVMRVAERFAGFSLGEADLL 678 Query: 709 RRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVS 768 RRAM KK +++A +S F +GA + ++A ++F +E FA YGFN+SH+ AY+ ++ Sbjct: 679 RRAMSKKDHDKIAAMQSKFIDGAVGRHHDQQVAEQVFSYIETFAQYGFNRSHAVAYSKLA 738 Query: 769 YQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDD 828 +Q ++KAHYPA F AV+ + + +KV + E + IL P +N + +N Sbjct: 739 FQLAYIKAHYPAAFYKAVLNDSIADHKKVGIYIAEAKLSHVTILRPSLNHSWQGYSMNKQ 798 Query: 829 GEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAF 888 GE+ G+ +I G+ EA+I+ R +GG +R+L + R +K LE LI +GA Sbjct: 799 GELQMGLASISGLRRDFREALIQERQEGGQYRDLTNFIGRLPSKYRKVSQLEPLIYAGAL 858 Query: 889 DRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQV 948 D G +R L+ S+ + A E+I +F L + ++ + +P Sbjct: 859 DEFGFNRKTLLGSMQGYIDAVG--LAGESIS---LFESLTPKMHEVAE-------FPLNE 906 Query: 949 VLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKV-ITAAGLVVAARVMV 1007 L E E LG+YL+GHPI YL I R D+ G +T V + + Sbjct: 907 KLGYEHEYLGVYLSGHPIEPYLAAIPEN----RRTDIANLAVGMTSVTVVIYVQNVKKIR 962 Query: 1008 TKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTA 1067 TK+G+ + D +G L + +F K + LL +++L+++G++ L+M A Sbjct: 963 TKKGDPMAFVDGIDLTGTLSITIFPTVFKKIEPLLVNEKVLLITGKIEQQRGRDTLQMIA 1022 Query: 1068 REVMDIDE------AREK--------YARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTI 1113 +V++ DE EK Y R +A S D I L N LRQ G Sbjct: 1023 NQVINGDELLAESSVSEKAAASTGQWYLRIMA-SAEDAGIMPALQNILRQ-----HHGAN 1076 Query: 1114 PVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSEQV 1155 PV + ++R D R ++ T+ ++ D +R ++G V Sbjct: 1077 PVLIVFER-DHR-KIALNETYWLTADDETGEAIRSILGENNV 1116 >UniRef50_B9E7A8 DNA polymerase III alpha chain n=1 Tax=Macrococcus caseolyticus JCSC5402 RepID=B9E7A8_MACCJ Length = 1051 Score = 543 bits (1399), Expect = e-152, Method: Compositional matrix adjust. Identities = 363/1085 (33%), Positives = 577/1085 (53%), Gaps = 97/1085 (8%) Query: 7 VHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIV 66 VHL VHS Y ++ + LV + L A+A+TDF L G+ FY A A IKPI+ Sbjct: 6 VHLNVHSAYDLLHSTVEIDALVTRVTELKEHAVALTDFNVLFGVQSFYKACIAADIKPII 65 Query: 67 GADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNE 126 G + C G + LA NNTGY NL L S+ +G P+ WL + Sbjct: 66 GMEI---CVTDGLKQLRAVCLARNNTGYVNLIKLSSRIQLKGVELT-PL---KWLSQYQS 118 Query: 127 GLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAV 186 G+I+ + +S+ S ++Y H S L A Sbjct: 119 GIIV--------IFKSITESESHFTQGIESYYICH-----------------NSSLDA-- 151 Query: 187 ELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEM 246 V DV +++SS E+ AI + L + R + YM+ + ++ Sbjct: 152 --------KKVYIEDVLYLESSGVQHLEVLNAIEENKKLP-LEMVRIKAGTAYMKDDVQL 202 Query: 247 CELFADIP-EALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKEGLEERLA 305 +L IP E L T EIA +CNV + +P+FP S++ YL+K +E E Sbjct: 203 IDL--KIPQEYLDRTHEIADQCNVDITKHHATMPKFPVEGYSSDAYLMKLLQEKKRE--- 257 Query: 306 FLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSG 365 P +ER Y++RL E VI QMG+ YFLIV + IQ++K++ + VGPGRGS Sbjct: 258 --IPHFDER------YEQRLRYEYDVITQMGYADYFLIVGDLIQYAKEHDILVGPGRGSS 309 Query: 366 AGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRD 425 GSL++Y L IT++DP++++LLFERFLNPERV+MPD D+DF KRDQVI++ D YG+ Sbjct: 310 GGSLISYVLGITEVDPVQYNLLFERFLNPERVTMPDIDIDFEDTKRDQVIQYAVDKYGKY 369 Query: 426 AVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIY 485 VS I+TFG + A+AV+RD GR+L + +IS LIP G+TL E + I Sbjct: 370 NVSGIVTFGHLNARAVMRDTGRILQFSDAELKKISTLIPKRVGITLDDMKMDEDFMRFIN 429 Query: 486 EADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSD 545 E D+ K D+A LEG+ RN HA GV+I +TD+ P+ E +TQ+ ++ Sbjct: 430 E-DDRRKQWFDIAYALEGLPRNTSTHAAGVIIHDQLLTDYVPII--EGDSVSLTQWTMTE 486 Query: 546 VEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSET 605 VE GL+K DFLGLR L+II ++ + + + LD+ +PLDD K + +L + +T Sbjct: 487 VESIGLLKIDFLGLRNLSIIRNVMDQVRIQFNQQ----LDLNTLPLDDPKVYTLLAQGDT 542 Query: 606 TAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPD 665 T +FQLES G++++++ L+P F D++A++AL+RPGP++ V +I+R+HG + + Y Sbjct: 543 TGIFQLESEGIRNVLRNLKPSHFNDIVAVLALYRPGPMEQIPV--YIERRHGAQSVDYI- 599 Query: 666 VQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRS 725 H+ LK +L+ T+G+I+YQEQ+MQIA +G++ G AD+LRRAM KK + ++ Sbjct: 600 ----HDDLKAILKDTFGVIIYQEQIMQIANQFAGFSYGEADILRRAMSKKDMSVLLTEKE 655 Query: 726 VFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAA 785 F G+ G + + A I++L+ KFA YGF K+H+ AYA ++Y L+LK HYP F A Sbjct: 656 HFILGSVNKGYDKQTAEAIYELILKFANYGFPKAHAVAYAKIAYYMLYLKVHYPNIFYTA 715 Query: 786 VMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGP 845 +++ + + K ++DE + G+ I DIN +++ DG I+ +G IKG+G Sbjct: 716 ILSNQIGSEHKTKEIIDEVKKRGIPIYAADINKAHWYYRTYKDG-ILNALGVIKGLGYKS 774 Query: 846 IEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDA 905 ++ II+AR +G F++++D CAR ++ ++ +LE LI +G FD G RA L+ SL Sbjct: 775 VQDIIDARKQGS-FKDIYDFCARIPSRIASKPLLEALIHAGCFDSFGHTRATLLASLDMI 833 Query: 906 LKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHP 965 + + E+ ++ G+ ++ I + + + + E+ LG YLT HP Sbjct: 834 IDVERTNEGEESFLES--LGLNKKKDYIIHEEMSDMKK------AEYEKAYLGFYLTNHP 885 Query: 966 INQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGR 1025 + K ++ Y+ ++ +R + R + TK G + D + Sbjct: 886 VESRFKALQ-YLPLYKI-----AQRLNQHYMLIFIDEVRRIRTKNGQPMAFIKGFDGTDN 939 Query: 1026 LEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDI--------DEAR 1077 ++++ F D K++ +++ +++++G+ FD G A + + +EAR Sbjct: 940 IDIVCFPDTYRKFETVIQSHEMIVINGK--FDSNRGKDNYIAETIETVESFMNRIYEEAR 997 Query: 1078 EKYAR 1082 Y R Sbjct: 998 FIYIR 1002 >UniRef50_Q043V3 DNA polymerase III catalytic subunit, DnaE type n=15 Tax=Lactobacillus RepID=Q043V3_LACGA Length = 1038 Score = 542 bits (1396), Expect = e-152, Method: Compositional matrix adjust. Identities = 345/1060 (32%), Positives = 565/1060 (53%), Gaps = 49/1060 (4%) Query: 7 VHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIV 66 V L+ S +++++ K L + A G ALA+TD GLV FY A GIKP++ Sbjct: 4 VSLQNLSSFTLLESPTKVKDLAENAKKKGYSALALTDVNITYGLVNFYKAAKETGIKPLL 63 Query: 67 GADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQ--RGYGAAGPIIDRDWLIEL 124 G + + L V+A ++ GY+N+ L +S A G +++ + L + Sbjct: 64 GMQLRINGLIDQANKYDLIVIAKDDQGYKNI-LRLSSAVNLLTENGEKENVLELEELKKY 122 Query: 125 NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHA 184 L++++ + + L N + V ++ P + L ++ Y++ Sbjct: 123 LGHLVIITPSNLHSELKMLQTNNPNMGANYVRILKDAVPTSSLVYLGVYADQGQQEYINY 182 Query: 185 AVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEE 244 LA L + A D ++++ ++ AI L++ ++ + Y+++ E Sbjct: 183 LRSLATQFELSLAAVEDGQYLNRNEQFLRRTLQAIKSNTHLENVEQLAKQAGSHYLKTSE 242 Query: 245 EMCELFA--DIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMST-EDYLVKRAKEGLE 301 E+ + +I +AL N +I + CN + + LP+F T ++YL A+ GL Sbjct: 243 ELQVNYRKFEIEDALENAEKIGQLCNAKITFQDPQLPKFKQNKFPTSKEYLHSLAQNGLA 302 Query: 302 ERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPG 361 +R P+ Y +RL+ EL+VIN+MGF YFLIV + + ++ + GPG Sbjct: 303 KRFKGQIPER---------YQKRLDYELKVINEMGFDDYFLIVWDVMNFAHSVHITTGPG 353 Query: 362 RGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADM 421 RGS AGSLV+YAL+IT++DPLE++LLFERFLNP R MPD D+D +RD+VI+++ + Sbjct: 354 RGSAAGSLVSYALRITEVDPLEYNLLFERFLNPARQQMPDIDLDIPDNRRDEVIKYMFEK 413 Query: 422 YGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG-MTLAKAFEAEPQ 480 YG + +QI+TFGT+AAK V++DV RV G R IP G +TLA+A++ + Sbjct: 414 YGMNHAAQILTFGTLAAKQVLKDVCRVFGLNKVETYRWLDAIPHAKGKITLAEAYQKSKE 473 Query: 481 LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQ 540 L + + K L A LE + R+ HA G+VI + + L G PVTQ Sbjct: 474 LQLLVNTNTFSKILFATAEHLENLPRHYSIHAAGLVITDDSLAEIVGLQAGPLGI-PVTQ 532 Query: 541 FDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDML 600 K +VE GL+K DFLGLR LTI+ + + K+ +D IPL+D+++ + Sbjct: 533 QTKLNVESLGLLKIDFLGLRNLTILGNIIAAL-----KSEGVEIDPNQIPLNDQETLALF 587 Query: 601 QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE 660 QR +T AVFQ ES G+K ++++L PD FED++A+ AL+RPGP+ + + +FI+RKHG+E Sbjct: 588 QRGDTDAVFQFESDGIKRVLEQLHPDSFEDIVAVNALYRPGPMNN--IGHFINRKHGKER 645 Query: 661 ISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM 720 + YPD SLK +L PTYG+++YQEQVMQ AQVL+G++LG AD+LRRAM KK + + Sbjct: 646 VQYPD-----PSLKKILGPTYGVLVYQEQVMQTAQVLAGFSLGEADLLRRAMSKKNADVI 700 Query: 721 AKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA 780 K+R F +GA K G E+A +++D + +FA YGFN+SH+ AY+ +++ + K HYP Sbjct: 701 QKEREKFIQGAVKLGRRKEVAEQVYDYIAQFANYGFNRSHAVAYSKIAFWLAYFKVHYPG 760 Query: 781 EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG 840 F +++ +++ N K+ + + G+K LPPDI + F + ++G+I+ G+ AI+G Sbjct: 761 AFYLSLLNSNIGNRNKIAQYLMQAQEAGIKTLPPDIENSQADFSL-ENGKILVGLKAIRG 819 Query: 841 VGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMN 900 + ++ I+E + + + D + D L+ + LI +GAFDRL P+R L+ Sbjct: 820 LRSDLLKQILEIKRP---IKSMTDFLWKIDNNLLSADAIANLIKAGAFDRLAPNRNELLK 876 Query: 901 SLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLY 960 D +++ A +F L EP+ E+ + E+ + E E +G Sbjct: 877 INKDLVESVKM-----AGSNLSLFETL--EPKIEEEKMPTA---AEKSAM--EVEAMGFS 924 Query: 961 LTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLD 1020 +PI K +Y RL+ E+G A G ++ + + TK+G+ + Sbjct: 925 TGINPIIAVQKYARKY-NAKRLQAFESNEQG---IAVGKLMRIKQITTKKGDNMAFAVFS 980 Query: 1021 DRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFS 1060 D SG + +F K ++ L+ I ++ + D FS Sbjct: 981 DSSGDKDFTIFPQVWKKVEENLKIGDIYLLQVKTQSDRFS 1020 >UniRef50_C0GKP9 DNA polymerase III, alpha subunit n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GKP9_9FIRM Length = 1022 Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust. Identities = 378/1069 (35%), Positives = 549/1069 (51%), Gaps = 80/1069 (7%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHLRV S+YS + G + LV +A LGMPA+A+ D+ L G V+F GIKPI Sbjct: 3 FVHLRVKSEYSFLRGACRLEDLVARARELGMPAIALVDYGVLHGAVRFTNLARQYGIKPI 62 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGP---IIDRDWLI 122 +GA+F++ C L L +L + TG+QNL L+++ A P +D W+ Sbjct: 63 LGAEFSLPCGL------PLVLLVRDRTGWQNLVRLVNRVQ-----LARPRSDTLDMGWIA 111 Query: 123 ELNEGL--ILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 180 E GL +L +GG G+ RS AL + F +L L G P + Sbjct: 112 EDAAGLTAVLPAGG--GETVRSRQSYIQALEQ-----LQPVFGCEVYLGLEDGGLPGTKR 164 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 ++AE + +P+VAT++V ++ D + + + I G L R Y+ Sbjct: 165 QNELVAKVAEGKNVPLVATHNVHYVLPGDDEVYRMVNCIRTGRPLAGAGRSFLPGAAYYL 224 Query: 241 RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKEGL 300 + EM FA A NT+++AKRC + LP F D K E + Sbjct: 225 PAPAEMHRRFAAFSGACENTLDLAKRCTFILEQEGMQLPAFLQQD-------CKEPAEAV 277 Query: 301 EERLAFLFPDEEERLKRR----PEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGV 356 RL E ++RR E RLE EL VI G YFLIV + + +++ + Sbjct: 278 LRRLCL------EGMQRRGLENAEAYRRLERELAVIIPKGLSAYFLIVHDLVSYARKQNI 331 Query: 357 PVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIE 416 VGPGRGS GSLVAY L I +DPL L FERFL+ +R PD D+D C +R++++ Sbjct: 332 SVGPGRGSAGGSLVAYLLGIIQVDPLAHGLYFERFLSEDRSGFPDIDLDVCQRRREELLG 391 Query: 417 HVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFE 476 ++ D YG+ V+Q+ F T+ A+A +R+VG+VL + +++ +P G +A Sbjct: 392 YLRDRYGQGYVAQVSAFSTLGARAAVREVGKVLDMTGEKISTVAEALPYYAGRGGIEA-- 449 Query: 477 AEPQLPEIYEA---DEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEE 533 A Q PE A DE+ ++ AR+LEG+ R+ HA GV+I + + PL C Sbjct: 450 AVGQYPEFMSAKLRDEDSGTVLAGARRLEGLCRHLSTHASGVIIGDGNLQEALPL-CRGP 508 Query: 534 GKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDD 593 +TQ+DK DVE G +K D LG R LTI + AL + KR L IPLDD Sbjct: 509 AGEVLTQWDKDDVEEMGFLKIDVLGSRNLTIAHDALSWVRKRHGTT----LVAEEIPLDD 564 Query: 594 KKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFID 653 + ++ ML+R E+ FQLES GM+ +++RL P ED+I L++L+RPGP +SG+V++FI Sbjct: 565 EDTYAMLRRGESLGCFQLESVGMRRVLRRLAPQRLEDLIHLLSLYRPGPWESGLVESFIA 624 Query: 654 RKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMG 713 R+HGRE D+ H L +L TYG++LYQEQVMQ+A L GYT G AD LRR M Sbjct: 625 RRHGRE-----DMSGVHPLLTGILAETYGVVLYQEQVMQVACELGGYTPGEADGLRREMS 679 Query: 714 KKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLW 773 ++ P + F GA K G++ A +F + +FAGY FNK+HSAAYALVSY T + Sbjct: 680 RRLPSLQEFHQPKFVAGAVKRGLSRAEAEDVFTHLCRFAGYSFNKAHSAAYALVSYWTAY 739 Query: 774 LKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVY 833 LK HYP EF AA++++ V V E G+ +LPP +N F V + I Sbjct: 740 LKKHYPVEFYAALLSSGSGYYATAV-YVREAAIRGVPVLPPHVNHSGLSF-VPEKEAIRS 797 Query: 834 GIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGP 893 + ++ +G EA++EA+ KG F L D C R L R L LI +GAF LG Sbjct: 798 ALPVVRDLGARAAEALLEAQKKGP-FMSLHDFCCRVGRSALRRSALVNLIKAGAFAGLGR 856 Query: 894 HRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQP---WPEQVVL 950 +R + SL LK D+ GQ + ++ EE S P WPE V+ Sbjct: 857 NRRQALASLDHVLKWTDRQP-----GQLSLLDLMPEE------SAVPALPDFSWPE--VV 903 Query: 951 DGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKR 1010 E ETLG+ L+ HP+ Y K+++ V L ++ G +T AG V+ K+ Sbjct: 904 AAELETLGMALSDHPLACYKKQLQS-VSREPLCNLCNLPVGTKVTVAGTVMGRTRRRLKQ 962 Query: 1011 GNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEK--DRILIVSGQVSFD 1057 G + + D SG E + + Y++LL + +++G+ + D Sbjct: 963 GGVMLTLFISDESGFAEAVFYP---ADYRRLLYRLDAAAFVITGKTTAD 1008 >UniRef50_D2EL28 DNA polymerase III subunit alpha n=1 Tax=Pediococcus acidilactici 7_4 RepID=D2EL28_PEDAC Length = 1112 Score = 536 bits (1380), Expect = e-150, Method: Compositional matrix adjust. Identities = 370/1166 (31%), Positives = 610/1166 (52%), Gaps = 74/1166 (6%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FV L V S YS++ K A LVK A G A+A+TD + G ++FY A +KPI Sbjct: 4 FVPLHVLSSYSLLTSPTKIAELVKTAKDRGYSAMALTDNNTMYGAIEFYQACLKNDLKPI 63 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 VG + D L +LA N GY NL L IS A +A P + + L Sbjct: 64 VGLTIWLDSTRGIDNQFALVLLAKNINGYHNL-LRISSAKMTEI-SAKPTLTFNDLRAYW 121 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF--PDRYFLELIRTGRPDEESYL- 182 + L+++ +V L RG + + Y++ PD + G ++S++ Sbjct: 122 KDLVVIVPPVRSEVNELLERGMANDAQALIEEYQQSIDSPDLFL------GINGQQSHVM 175 Query: 183 -HAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241 ++A+ G+ + V +++ D A ++ I G L P+ +++ Sbjct: 176 RQTLTQMAQKAGIGCLPLPSVEYLNEEDHFATQVLRDIDSGKVLQHPELLAKGGGNNWLK 235 Query: 242 SEEEMCELFADI--PEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTE-DYLVKRAKE 298 E + + E L + N+ + + LPQF T + YL + ++ Sbjct: 236 PATEFVREYGQLGDAEMLTQLDRVVAGINLEIPIVSPRLPQFATPNQQDSFTYLTQLCQQ 295 Query: 299 GLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPV 358 L + L PD E Y RL+ EL VI +MGF YFLI+ + +Q++ + Sbjct: 296 ALTQ-LKENVPDAER-------YQARLDHELAVIKEMGFADYFLIIHDVVQFAHQKQILT 347 Query: 359 GPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHV 418 GPGRGS AGSLVAY LKIT +DPL++ LLFERFLNPER MPD D+D ++R+ V+++V Sbjct: 348 GPGRGSAAGSLVAYLLKITSVDPLQYGLLFERFLNPERAQMPDIDLDIPDDQREVVLQYV 407 Query: 419 ADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAE 478 D YG V QIITFGT+AAK IRDV RV G +++IS LIP +TL +A + Sbjct: 408 HDRYGHQHVGQIITFGTLAAKQAIRDVARVFGEMPNKINQISALIPNKLNITLKQAAQTS 467 Query: 479 PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538 +L + E+ + + + + A +LEG+ R+ HA G+V++ ++ + P+ EG + Sbjct: 468 HRLRDFIESSPKNRFMFETACRLEGLPRHFSTHAAGIVLSQDELVESVPVQDGNEGM-LM 526 Query: 539 TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598 +Q+ K+ VE GL+K DFLGLR L+++N LE++++ EP +I I L+D ++ Sbjct: 527 SQYSKNFVEQVGLLKMDFLGLRNLSLMNNILELVHR-----TEPQFEIEKIELNDPQTLQ 581 Query: 599 MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658 + Q +T+ VFQ ES G++++++++ P F ++A+ AL+RPGP+++ +D F+ RK Sbjct: 582 LFQWGDTSGVFQFESTGIRNVLRKVHPTNFGLVVAVNALYRPGPMEN--IDRFVKRKDHL 639 Query: 659 EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718 E +P+ + L+ VL TYGI++YQEQVM++A + G +LG AD+LRRAM KKK Sbjct: 640 EPYRFPN-----QILERVLGETYGILVYQEQVMEVASAMGGLSLGQADLLRRAMSKKKHA 694 Query: 719 EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778 + + R+ F +GA + G + ++A +++ +E FA YGFNKSH+ AY+ +++Q +LKAHY Sbjct: 695 VIEQMRTNFIQGAVQKGYSEKIAQQVYRYIENFANYGFNKSHAVAYSKLAFQLAYLKAHY 754 Query: 779 PAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDIN--SGLYHFHVNDDGEIVYGIG 836 P +F A++ + + N K + E R+G+ L PDIN S Y + +G+I G Sbjct: 755 PGDFYTALLNSVVGNDTKTKTYIQELKRLGIPTLAPDINQSSATYTYQ---NGQIRMGFT 811 Query: 837 AIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRA 896 AIKG+ I+ ++ R +GG F+ + D R + ++ V++KLI +GA D G +RA Sbjct: 812 AIKGLRRDFIQHLLAERERGGQFKTVDDWLRRMGNQGIDEDVIDKLIFAGALDSFGYNRA 871 Query: 897 ALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERET 956 L L + LK + D+F +++ + S P LD E E Sbjct: 872 ELDEYLPELLKGITFSGQ-----NVDLF-------QKLMPTIKSRPDLPLDEKLDREEEL 919 Query: 957 LGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGI 1016 LG Y++ HP+ ++ + I++ R + + G+ +T+ + + R + TK+G + Sbjct: 920 LGTYVSAHPVERFAELIKQR----RFVQIQQFKAGEKVTSIVYIRSIRSIRTKKGEPMAF 975 Query: 1017 CTLDDRSGRLEVMLFTDALDKYQ--QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDID 1074 + D++ E ++F YQ QLLE R+L ++G+V + L++ ++D Sbjct: 976 AKISDQTDECEAVIFPRV---YQATQLLESKRVLQLTGKV--EQREDQLQL----IVDQI 1026 Query: 1075 EAREKYARGLA---ISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG 1131 EA + A G I + R+ RL + + G +PV L Y+ + + L Sbjct: 1027 EAPRQIAHGQTHWLIKVPSRKNPADFQKRLFGMFKEYH-GKVPVTLVYRDTNQQRALSEK 1085 Query: 1132 ATWRVSPSDRLLNDLRGLIGSEQVEL 1157 + + +P + L+G++Q+ L Sbjct: 1086 FSLQGTPEVK--KAFENLLGTDQISL 1109 >UniRef50_A8YV21 DNA polymerase III alpha subunit n=5 Tax=Lactobacillus RepID=A8YV21_LACH4 Length = 1035 Score = 535 bits (1377), Expect = e-150, Method: Compositional matrix adjust. Identities = 346/1056 (32%), Positives = 554/1056 (52%), Gaps = 58/1056 (5%) Query: 13 SDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV 72 S ++++D K + L++ A G A+ + D GLV FY AGIKP++G + Sbjct: 10 SSFTLLDSPTKVSDLIETAKKRGYQAVGLADVNVTYGLVNFYELAKKAGIKPLLGMQLRL 69 Query: 73 QCDLLGDELTHLTVLAANNTGYQNLTLLISKA-YQRGYGAAGPIIDRDWLIELNEGLILL 131 + + L A N GY NL L S + G ++ L + L+L+ Sbjct: 70 NGLVDSTQKYDLIAFAKTNAGYHNLLRLSSAINFLTDNGQNNNVLTLKDLSKYLADLLLI 129 Query: 132 SGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEA 191 SL N L + + +E D Y L P ++Y+ L++ Sbjct: 130 VPANTKSELLSLFETNKQLGSDLIRDLKELTSDLY---LGVYANPSMQNYIDYVRSLSKQ 186 Query: 192 RGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFA 251 L ++AT D +++ D + AI G + D Y+ E++ + + Sbjct: 187 FDLLLLATEDSEYLNPHDQFLQKTLRAIATGDKIQDALPLAKQEGSHYLVEAEQLLQRYH 246 Query: 252 --DIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGD-MSTEDYLVKRAKEGLEERLAFLF 308 D+ +A+ NT ++A++CN V + LP++ +++E+YL A+ GL++R Sbjct: 247 EFDLDDAVNNTWQVAEKCNAEVVFQKPVLPKYHQKKFVTSEEYLHYLAQTGLQQRFG--- 303 Query: 309 PDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGS 368 + K EY +RL EL+VINQMGF YFLIV + I + + GPGRGS GS Sbjct: 304 -----QNKIPAEYQKRLNYELRVINQMGFDDYFLIVWDVINYCHRVQITTGPGRGSACGS 358 Query: 369 LVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVS 428 LV+Y+L+IT++DP+E++LLFERFLNP R MPD D+D +RD VI+++ YG D + Sbjct: 359 LVSYSLRITEVDPIEYNLLFERFLNPSRHEMPDIDLDIPDVQRDTVIKYMYQKYGMDHAA 418 Query: 429 QIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG-MTLAKAFEAEPQLPEIYEA 487 QI+TFGT+AAK +RDVGRV G + + + IP G +TL +A++ +L + +A Sbjct: 419 QILTFGTLAAKQALRDVGRVFGLTMVEIKKWADAIPYSKGKITLKEAYQQSRELRLLVDA 478 Query: 488 DEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVE 547 E K L A LEG+ R+ HA G+VI+ I + L G PVTQ K VE Sbjct: 479 TPENKLLFKTALGLEGLPRHYSIHAAGLVISDNSIAGISGLQAGPLGI-PVTQQTKKYVE 537 Query: 548 YAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTA 607 GL+K DFLGLR LT++ L +I ++ K +D IPL+D ++ + Q+ +T A Sbjct: 538 SLGLLKIDFLGLRNLTVLGNILNLIRQQGIK-----IDPNQIPLNDAQTLQLFQQGKTDA 592 Query: 608 VFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQ 667 VFQ ES G++ ++++L PD FED++A+ AL+RPGP+Q+ +D F+ RK+G+E + YPD Sbjct: 593 VFQFESGGIRQVLRKLHPDNFEDLVAVNALYRPGPMQN--IDAFVRRKNGQEAVRYPD-- 648 Query: 668 WQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVF 727 SLK +L+PTYGI++YQEQVMQ AQ+L+G++LG AD+LRRAM KKK + + +++ F Sbjct: 649 ---PSLKKILQPTYGILVYQEQVMQTAQILAGFSLGEADILRRAMSKKKQDVIEQEKGKF 705 Query: 728 AEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVM 787 G K G +A +++ +E+FA YGFN+SH+ AY ++Y +LK HYPA F A++ Sbjct: 706 IAGTIKQGHTKAVAERVYQYIEQFANYGFNRSHAVAYTKIAYWLAYLKVHYPAAFYTAML 765 Query: 788 TADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIE 847 + K + + +KILPPDIN + + + +I+ G+ AIKG+ ++ Sbjct: 766 NSAAG--AKAQDYIMQAQEANIKILPPDINHSSLEYALKNK-QILVGLKAIKGL---RVD 819 Query: 848 AIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALK 907 E + ++ L D R D K L ++ LIM+GAFD L +R L+ + + + Sbjct: 820 FAREIADNTKPYKSLNDFLRRIDPKFLQADAIKALIMAGAFDGLEKNRNELLVNCDEII- 878 Query: 908 AADQHAKAEAIGQADMFGVL----AEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTG 963 A+ + I +++ G A+EP E++ E + LG T Sbjct: 879 -ANVQLTGQNISLSEILGNAPLKPADEPTGAEKAAM-------------EEKVLGFSTTT 924 Query: 964 HPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRS 1023 P L ++++ + ++ + + G ++ + + TK G + + D S Sbjct: 925 SP----LIAVQKFAQKFNSRPLNQFQLNESGVGVGKLIRFKQIRTKNGKNMAFASFADTS 980 Query: 1024 GRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDF 1059 G EV++F +K+ L+ I ++ +V D F Sbjct: 981 GEQEVVIFPRIYEKFGTELKVGDIYLLGLRVQGDRF 1016 >UniRef50_B9L411 Error-prone DNA polymerase n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L411_THERP Length = 1059 Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust. Identities = 358/1080 (33%), Positives = 548/1080 (50%), Gaps = 92/1080 (8%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 + L HS +S++D LV++AAALG LA+TD L G+V+F A GI PI Sbjct: 5 YAELHAHSCFSLLDAPCHPEQLVQQAAALGYEHLALTDHDALHGVVRFVRAAERVGIHPI 64 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGP----------- 114 VGA+ + ++ +HL +LA + GY L L+S A GP Sbjct: 65 VGAEITM------EDGSHLALLAEDERGYATLARLLSAARLGWPTPEGPGSEDTALAGSP 118 Query: 115 -----IIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFL 168 + WL++ ++GLI+L+G R G + R+L GN A + F P+R F+ Sbjct: 119 ARRAVALPWHWLVDHHDGLIVLTGCRQGPLARALTEGNRADALARAHWLARVFGPERCFV 178 Query: 169 ELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228 EL G + LA GLP+VAT +V ++D++ + ++ V I +G T++ P Sbjct: 179 ELQDHGERGDRERCTELAALARTAGLPLVATGNVHYLDAAGWRLQDVLVCIREGITIETP 238 Query: 229 KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFP----TG 284 R S + + M F P+A+ANT IA+RC V++ + P P G Sbjct: 239 HPARKTSAAYRLVAPASMAHRFRSFPDAVANTRRIAERCQVSLDFRQVRFPPLPHLVPPG 298 Query: 285 DMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIV 344 + + L ++A EG + R L E + R+ LE EL VI ++G +FLI Sbjct: 299 ETPMQ-VLRRQAYEGAQRRYGQL----SEPVVRQ------LEHELGVIERLGVAEFFLIC 347 Query: 345 MEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDV 404 + + G GRGS A SLVAY L IT +DPL LLFERFLN ER SMPD D+ Sbjct: 348 ADLANRFR------GRGRGSAADSLVAYCLGITQVDPLAHRLLFERFLNEERPSMPDIDI 401 Query: 405 DFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISK--- 461 DF +E R++ I +V YG + + + + T A++ IRD+GRVLG P +D ++K Sbjct: 402 DFGLEDRERAIAYVYATYGVEHAAMVCNYVTFQARSAIRDLGRVLGLPPEIIDELAKSQG 461 Query: 462 -LIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPT 520 L P + A A P L + L+ + +LE + R+ H GG+VIA Sbjct: 462 RLGEALPVLARALAPRLSPDL------RRRLAWLVRLVPQLEDIPRHLSVHVGGMVIAGR 515 Query: 521 KITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNG 580 + +F + V +DK D+E AGL+K D L +R +++++ A+E+I + Sbjct: 516 PVVEFTTVEPSRMPGRVVLGWDKRDIEEAGLIKTDVLCVRAISVVHQAIELIEQASGLR- 574 Query: 581 EPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRP 640 +D+ +PLDD + +LQ ++T +Q+ESR + + R P+ FED+IA VA+ RP Sbjct: 575 ---IDLEQLPLDDPAVYRLLQTADTIGTYQVESRAQQQSLPRTHPERFEDLIAQVAIIRP 631 Query: 641 GPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGY 700 GP+Q GMV +I R+ G E + Y H L+P+L T G+ILYQEQV+++A ++G Sbjct: 632 GPIQGGMVHPYIRRRRGLEPVRY-----LHPKLEPILRETLGVILYQEQVLEVAMAIAGM 686 Query: 701 TLGGADMLRRAMGKKKPE-EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKS 759 T G AD RRAMG K+ M R F GAE+NG+ +A +IF+ + FA YGF KS Sbjct: 687 TAGQADAFRRAMGSKRSRAAMEALRGDFLAGAERNGVARPVAERIFEQIAAFAEYGFCKS 746 Query: 760 HSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSG 819 H+AA A +Y+TLWL+AHYPA + A++ L+ + R G+ +LPPD+ + Sbjct: 747 HAAALARTAYETLWLRAHYPAALLCALLNNQPMGFYAPEVLIWDALRRGIHVLPPDVLAS 806 Query: 820 LYHFHVNDD---GEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNR 876 + D G + G+ A++GVG E I+ AR++ FR+ D+ R +L Sbjct: 807 AARSTLTGDPVHGPVRLGLTAVRGVGRAAAERIVAARSEEP-FRDTADVVRRA---QLTP 862 Query: 877 RVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQ 936 +E L++ GAFDRL P R+ L D L A + + + V E + +EQ Sbjct: 863 EQVEALVLVGAFDRLAPDRSR-RELLWDLLAVATERPERPRLLDVSEPAVRLPELDTVEQ 921 Query: 937 SYASCQPWPEQVVLDGERETLGLYLTGHPINQYL--KEIERYVGGVRLKDMHPTERGKVI 994 ++ + LG L H + Y + I R RL+ + P G Sbjct: 922 TFL-------------DYAILGFCLDRHLMELYRAQRRILRVTPAARLRTLPP---GATA 965 Query: 995 TAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQV 1054 AGLVV + T RG + TL+D +G + V++ ++++ LL + +L++ G+V Sbjct: 966 RVAGLVVCRQAPPTARG--VLFLTLEDETGLVNVIVPPPVREQHRALLRRQPVLVIDGRV 1023 >UniRef50_C0GW63 DNA polymerase III, alpha subunit n=2 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GW63_9DELT Length = 782 Score = 533 bits (1372), Expect = e-149, Method: Compositional matrix adjust. Identities = 304/795 (38%), Positives = 474/795 (59%), Gaps = 33/795 (4%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MSE F HL H++YS+ +G + L KAA MPA++ITD NL G +K Y A Sbjct: 1 MSE--FAHLHCHTEYSLFEGCIRIEELCSKAAEYKMPAVSITDSGNLYGAMKLYSAAREY 58 Query: 61 GIKPIVGADFNVQCDLLGDE---LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIID 117 GIKPI+G + N+ + D HL +LA + GY NL L+S + +G+ P +D Sbjct: 59 GIKPIIGCEINLVPGKVTDRDKFNYHLVLLAMDLRGYHNLVKLVSAGWLQGF-YYKPRVD 117 Query: 118 RDWLIELNEGLILLSGGRMGDVGRSLLRG---NSALVDECVAFYEEHFPDRYFLELIRTG 174 +D L + ++G+I LS G+V + LLR + L E Y +PDR++LEL +G Sbjct: 118 KDMLQKYSDGIIALSACLKGEV-QYLLRAKGFDQGL--EAAMQYARIYPDRFYLELEASG 174 Query: 175 RPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNY 234 ++ +EL+E GLP+VA ND R++ D +AH + I + LD+ Sbjct: 175 YNEQAEVNDRLMELSEKTGLPIVAANDCRYLTPQDAEAHAVLKCIKNAERLDEQDLDNLD 234 Query: 235 SPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF-PTGDMSTEDYLV 293 + + Y +S EEM + F+ P AL N +I ++CN+ + + LP++ PT + + + L Sbjct: 235 TRELYFKSPEEMEKEFSYCPTALENVHKIVEQCNLDLDSPKRHLPRYKPTIEDTLDKELT 294 Query: 294 KRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKD 353 A GL+E+LA L P + +R K Y RL+ EL+++ + G YFL+V +++ W++ Sbjct: 295 ALALNGLDEKLATL-PYKVDREK----YFTRLDKELKILCEQGKSWYFLVVYDYVAWARS 349 Query: 354 NGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQ 413 G+ VGPGRGS G + AYAL IT +DP+ L FERF N +R + D DVD C E+R + Sbjct: 350 RGIAVGPGRGSAPGCMTAYALGITGIDPILHKLHFERFCNTKRAGVVDIDVDLCQERRQE 409 Query: 414 VIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAK 473 V ++V + YG+++V I F M A+ V RDV V+G +RI +LIP +PGMT++K Sbjct: 410 VFDYVFEKYGQNSVVYISVFICMRARTVFRDVSLVIGISPEQAERIIQLIPQEPGMTISK 469 Query: 474 AFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEE 533 A E EP L I +E+++ D+ +LEG+ R+ HA +VI+ + D+ PLY Sbjct: 470 AMEMEPALRSIMNDNEKMQRCFDICTRLEGLIRHITSHAARIVISNENLQDYLPLY---R 526 Query: 534 GKHP--VTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPL 591 G++ + Q+D +D+E G FD LGL+ L++I+ L++I +A + P D+ ++PL Sbjct: 527 GRNHELIAQYDYNDLERLGFPGFDLLGLKYLSLISRTLDLI---KASQKQAP-DMDSLPL 582 Query: 592 DDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNF 651 DD K+F ++++ T FQLE G + ++ L+P+ ED+ A++AL+RPGPL SGM+ NF Sbjct: 583 DDAKTFVLIEQGHTDGAFQLEGDGFRQYLRELKPERLEDLAAMLALYRPGPLVSGMLSNF 642 Query: 652 IDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRA 711 I R+HGR Y H L +L+ T+G+I+Y EQVM IA ++G++L A++L + Sbjct: 643 IKRRHGRVAAEYA-----HAELADILKETHGMIIYHEQVMTIAHKIAGFSLEDAEILAKN 697 Query: 712 MGKKKPEEMAKQRSVFAEGA-EKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQ 770 + KKPE + +Q+ F +GA +KN + + A +IFD++++ YG+ K+HS AYA++SYQ Sbjct: 698 LVGKKPEALIQQKEKFIKGAMQKNNVPVKTAEQIFDMMKQAGPYGYLKAHSIAYAMISYQ 757 Query: 771 TLWLKAHYPAEFMAA 785 T +LKA+YP EF A Sbjct: 758 TAFLKANYPEEFQQA 772 >UniRef50_C2E9M6 DNA polymerase III alpha subunit n=1 Tax=Lactobacillus ruminis ATCC 25644 RepID=C2E9M6_9LACO Length = 1120 Score = 532 bits (1371), Expect = e-149, Method: Compositional matrix adjust. Identities = 352/1081 (32%), Positives = 573/1081 (53%), Gaps = 88/1081 (8%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK-P 64 F L+V S YS++ K + V+ A+ +G AL +TD L G +F+ A GIK P Sbjct: 2 FAPLQVKSAYSLLQSPLKISDYVEAASKMGYEALCLTDVDVLYGAFEFFEACRKYGIKKP 61 Query: 65 IVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL 124 ++G + N+Q D +E L +LA N GY+NL + S + P + ++ Sbjct: 62 VIGIELNMQGDG-EEEPISLLLLAKNAAGYRNLVKISSNKLSEN--SLDPHDNPQTCDDI 118 Query: 125 NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHA 184 + L D ++ S V F+++ + L L + + E L A Sbjct: 119 KDCL---------DGVAVIVSPESIKVASSPKFFKKLQSNGAKLYLGKGPQFSRELLLDA 169 Query: 185 AVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEE 244 +AE +P +A + V ++ D+ + AI ++ +R S +Y++S Sbjct: 170 -YRIAETLKIPQIALSKVEYLKPDDYFGQVVLQAIDADERINFDQR---MSGSEYLKSPS 225 Query: 245 EMCELF--ADIPEALANTVEIAKRCNVTVRLGEYFLPQFP----TGDMSTEDYLVKRAKE 298 E + A + T ++ + + E LP + +S DYL + + Sbjct: 226 EYQIDYKNAGMETEFGQTEKLLSEIDFWLTPSEISLPHYKFQKGVAKVSAHDYLKRLCAD 285 Query: 299 GLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPV 358 G++ F + +++ Y +RL+ EL+VI++MGF YFLIV Q+++ G+ V Sbjct: 286 GIKR----CFRENPDKIDI---YQKRLDHELKVIHEMGFEDYFLIVSGITQYARSVGIIV 338 Query: 359 GPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHV 418 GPGRGS AGSLV+Y L+ITD+DP++++LLFERFLN ER MPD D+D KRD++I++V Sbjct: 339 GPGRGSAAGSLVSYVLRITDVDPIKYNLLFERFLNEERHEMPDIDLDIPDNKRDRIIKYV 398 Query: 419 ADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAE 478 D YG ++QIITF T AK +RD R+ G D SK IP MTL +A Sbjct: 399 YDTYGSRHMAQIITFDTFGAKQALRDGCRIFGLTQAETDAWSKAIPFGDKMTLERARRES 458 Query: 479 PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538 ++ + + + L + A+KLEG+ R+ HA G+V++ + + P+ +G + + Sbjct: 459 QRIRNLIADSKRNERLFETAQKLEGLPRHFSTHAAGIVLSDQNLDEVVPVQIGNDG-YLM 517 Query: 539 TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598 TQF K VE AGL+K D LGL+ L I+N A +++N+ +A LD+ IPLDDK + + Sbjct: 518 TQFSKKPVEKAGLLKIDLLGLKNLRILNTAKDLVNQNKASK----LDLEQIPLDDKATLE 573 Query: 599 MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658 + ++T +FQ +S G++ + +++P+ FED++AL AL+RPGP+++ +D F R+HGR Sbjct: 574 LFYNAKTEGIFQFDSYGIRQAMLKIRPENFEDVVALNALYRPGPIRN--IDEFTARRHGR 631 Query: 659 EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718 + +SYP + L+P+L TYGII+YQEQ MQ++ + G+TLG AD+LR+A+ KK+ E Sbjct: 632 KTVSYP-----AKVLEPILNSTYGIIVYQEQAMQVSSKMGGFTLGEADILRQAISKKEHE 686 Query: 719 EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778 + + R F GA+K G + E A++++D +E+F YGFN+SH+ AY+ +++Q +LKAHY Sbjct: 687 TIERMRVKFVAGAQKKGFSKEDALRVYDYIERFGEYGFNRSHAVAYSKMAFQMAYLKAHY 746 Query: 779 PAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAI 838 PAEF A+++ + N EK + + +KIL PDIN Y F ++D G I++G ++ Sbjct: 747 PAEFYCALLSTVIGNVEKTQSFLAAAKKRKIKILAPDINKSSYDFRISDGG-IMFGFLSV 805 Query: 839 KGVGEGPIEAIIEARNKGGY--FRELFDLCART-------------DTKKLN------RR 877 KG+ I I+ R+ GGY F+ L D R D KK R Sbjct: 806 KGIRFDFIRQILAERHAGGYRPFKSLDDFMNRMVERALVDKHDHDGDAKKREKIAKSYRP 865 Query: 878 VLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQS 937 ++E LI GAFD L R+ L+N L D L DQ L+ +E Sbjct: 866 IVETLIYVGAFDSLEADRSQLLNRL-DVLVKYDQ---------------LSMSVPLLESL 909 Query: 938 YASCQPWPEQVVLD----GERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKV 993 + + ++ LD E+E LG+YL+ HP+++Y + +G L + P ++ V Sbjct: 910 FVPSKKNVRKLTLDERLEKEKERLGVYLSAHPLDKY-SAFAQGIGASSLASLVPDQQAIV 968 Query: 994 ITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQ 1053 + + + TK+G+ + + D++G +E F +Y + L+K+ L+ G+ Sbjct: 969 LVRI---KEIKKIKTKKGDEMAFVSCIDQTGEMEATFFPKQFLRYHKGLKKNAELLFYGR 1025 Query: 1054 V 1054 V Sbjct: 1026 V 1026 >UniRef50_D0BKV5 DNA polymerase III, alpha subunit n=1 Tax=Granulicatella elegans ATCC 700633 RepID=D0BKV5_9LACT Length = 1112 Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust. Identities = 363/1174 (30%), Positives = 601/1174 (51%), Gaps = 88/1174 (7%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F L+V S YS++ V A LG LA+TD L G ++FY I+PI Sbjct: 3 FTILQVTSGYSLLRSTIDLYRYVMTAKELGYQKLALTDEGVLHGAIEFYNLCRNQNIEPI 62 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW---LI 122 +G F + + + + V A + GYQ+L L S YQ+ ++ +D + Sbjct: 63 IGCLFQYKQWRNAEAFSSMIVYAKDEIGYQSLIEL-STQYQKS-----KLVSKDMEKIIK 116 Query: 123 ELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYL 182 E +E L ++ + G A E +FP+ I G + L Sbjct: 117 EASEHLQIVFPQENSEWALECSNGEVAFQRWLFEAEERYFPN------IHLG-IESNQIL 169 Query: 183 HAAVELAEARG-------LPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYS 235 +E EA G LP V T ++ + D ++ + AI DG TL + S Sbjct: 170 PIPLEELEAWGQDFSMKLLPFVKT---FYLKAEDDFSYRVLKAIGDGETLSTTQA--EVS 224 Query: 236 PQQYMRSEEEMCELFADIPEA--LANTVEIAKRCNVTVRLGEYFLPQF--PTGDMSTEDY 291 Q Y++ E+ + + + I E + E + + LP+F P G MS E Y Sbjct: 225 GQYYLQDEKTLTQQSSTILEGKLVRQLEEFVDSLKWKLSKHKLLLPKFQTPEGKMSQE-Y 283 Query: 292 LVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWS 351 L + ++ L+++ E +K EY+ RL EL +I+QMGF YFLIV + ++++ Sbjct: 284 LQEICQQSLKDK---------ELVK--DEYESRLNYELSIIHQMGFDDYFLIVWDIMKYA 332 Query: 352 KDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKR 411 + G+ GPGRGS AGSLV+Y L IT +DP+E+ LLFERFLNPER +MPD D+DF +R Sbjct: 333 HEAGIQTGPGRGSAAGSLVSYLLNITKVDPIEYQLLFERFLNPERYTMPDIDLDFPDNRR 392 Query: 412 DQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL 471 + ++++V YG + V+QI TFGT +K +RDV RVLG SK IP G+ L Sbjct: 393 EDILDYVRRKYGENHVAQIATFGTFGSKQALRDVCRVLGLTTVQAGEWSKAIPNQLGINL 452 Query: 472 AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPL-YC 530 A+E L + + + + + A ++EG+ R+ HA GVV+ +TD PL Y Sbjct: 453 KTAYEQSKNLQTLVSRSPKNQLIFETACRIEGLPRHLSTHAAGVVLYDKPLTDVIPLIYK 512 Query: 531 DEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIP 590 D++ P+TQ+ VE GL+K DFLGL L+I++ ++E+ + + + IP Sbjct: 513 DQQ--MPITQYTMKYVEQIGLLKMDFLGLTNLSILHDSIELTKSIY----QHEIILNEIP 566 Query: 591 LDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDN 650 LDD+K+ ++ Q ++T +FQ ES G++ ++K+L+P ED+ A+ AL+RPGP++ +D Sbjct: 567 LDDEKTLELFQMADTNGIFQFESDGIRRVLKKLRPTNLEDIAAVNALYRPGPMEQ--IDT 624 Query: 651 FIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRR 710 FI RKHG+E + YP H L+ +L+ TYG+++YQEQVMQ+ ++G+TLG AD+LRR Sbjct: 625 FIKRKHGQEVVKYP-----HPILESILQSTYGVMVYQEQVMQVTSQMAGFTLGQADILRR 679 Query: 711 AMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQ 770 A+GKK + + +++ F EGA GI+ A +++ +E+FA YGFN+SH+ AY+L++YQ Sbjct: 680 AIGKKDAKVIETEKAHFIEGAIGKGIDVASATEVYQYIERFANYGFNRSHAFAYSLLAYQ 739 Query: 771 TLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGE 830 + KAHYP F A++ D + K+ E + G+ I P IN+ + + DG Sbjct: 740 LAYFKAHYPRAFYTAILRFVGDRSPKLQTYFIEAKQRGISIKNPSINTSVDDYTATIDG- 798 Query: 831 IVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDR 890 I G+ AIKG+ I+ I+ R + G F + D R + + VLE LI +GAFD Sbjct: 799 IFIGLNAIKGLRRDFIQEILTQRKQNGPFIDFMDFAFRIGKRYCKKEVLEALIDAGAFDE 858 Query: 891 LGPHRAALMNSLGDALKAADQHAKAEAIG-QADMFGVLAEEPEQIEQSYASCQPWPEQVV 949 LG +RA L ++ +++ H A+ +M+ EE + ++ Sbjct: 859 LGKNRATLRATIDAVIESVKFHGSNIALELNEEMYPKYFEEED-------------SNII 905 Query: 950 LDGERE--TLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMV 1007 ERE LG ++ P Y E + + K+++ G++ R Sbjct: 906 EKIEREIAVLGFPVSAFPTEPY----EILYKEQKANRISTIYESKLVSVLGILKNIRKTR 961 Query: 1008 TKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTA 1067 TK+G + T+ D +G ++ ++F + LLE+++++++ G+ S + ++ Sbjct: 962 TKKGEPMAFGTIQDETGEIDFVVFFEVYPIVFSLLEENQLVLLKGK-SRKNLQSKWQVQV 1020 Query: 1068 REVMDIDEAREKYARGLA----ISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRAD 1123 +EV+ + E E A+ + I +T++ ++ +++R + + G V LY + D Sbjct: 1021 QEVLSLLEV-EGLAQATSIKCYIKITEKLQTKEVFDQIRNVI-INNPGDTTVLLYIESKD 1078 Query: 1124 ARARLRFGATWRVSPSDRLLNDLRGLIGSEQVEL 1157 ++ F + V + L ++G + V++ Sbjct: 1079 QLLKMNFNSGLAVDAET--IKALSSIVGEKNVKI 1110 >UniRef50_C8NF53 DNA polymerase III, alpha subunit n=1 Tax=Granulicatella adiacens ATCC 49175 RepID=C8NF53_9LACT Length = 1117 Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust. Identities = 351/1071 (32%), Positives = 564/1071 (52%), Gaps = 82/1071 (7%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 + L+V S YS++ + V LG LA+TD L G V+FY GI+PI Sbjct: 3 YTTLQVFSSYSLLKSTIRLNEYVATGKLLGYKQLALTDDGVLHGAVEFYERCIQNGIQPI 62 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 +G F + + L V A + GY++L L +S YQ+G + + W+ + Sbjct: 63 LGCTFEIAWKSDASKKEMLVVYAKGSKGYESL-LKLSTLYQQGLTWTKEMTE--WIATHS 119 Query: 126 EGLILL------------SGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRT 173 E + ++ S GR+ V +++ + A V+ + E +R E +R Sbjct: 120 EDVKIVLPPTDSEWVAANSKGRLEAVLKAV-KEEYAGVEIAIGITRE-MVERSEFEKMRE 177 Query: 174 GRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRN 233 G EA G+ VA + R+++++D+ ++ AI G TL + + Sbjct: 178 G--------------IEAAGVLPVAFSVSRYLNATDYFPWKVLQAIRLGGTLSFTQE--D 221 Query: 234 YSPQQYMRSEEEMCELFADIPEA--LANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDY 291 + + + M ++F + L+N + K V + L + LP+FP D T Sbjct: 222 ATGSESLPEATSMAKVFQVVEGGVLLSNLEKFTKDLVVEIPLRDTMLPKFPVPDGKTSAQ 281 Query: 292 LVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWS 351 + E A L E P Y RL+ EL VI++MGF YFLIV + ++ + Sbjct: 282 FLYELCEA-----AML-----EMGVTTPIYVNRLKEELAVIHEMGFDDYFLIVWDIMRHA 331 Query: 352 KDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKR 411 ++ G+ G GRGS AGSLVAY L IT +DP+ + LLFERFLN ER +MPD D+DF +KR Sbjct: 332 REKGIQTGAGRGSAAGSLVAYLLHITGVDPIRYHLLFERFLNRERYTMPDIDLDFPDDKR 391 Query: 412 DQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL 471 + ++ ++ YG V+QI+TFGT+ AK V+RDV +V G V + S I +TL Sbjct: 392 EDILAYIVSKYGNQNVAQIVTFGTLGAKQVLRDVCKVFGENIITVQKFSNNIAQGK-VTL 450 Query: 472 AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCD 531 + ++ E E+ E + L +A+ LEG+ R++ HA GVV++ +T PL Sbjct: 451 EQTYKENKAFREHIESSERNRKLYQVAKALEGLPRHSSVHAAGVVLSQDALTKTVPLMKR 510 Query: 532 EEGKHP--------VTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPP 583 ++G +TQ+ VE GL+K D LGL LT+++ A++ K K Sbjct: 511 DKGYSASLQEADWMLTQYAMQAVEKVGLLKMDLLGLSNLTLLHKAIQQTQKITKKE---- 566 Query: 584 LDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPL 643 LDI IPLDD ++F++ Q+++T +FQ ES G++ ++K ++P FED++A+++L+RPGP+ Sbjct: 567 LDITKIPLDDPRTFELFQKAQTNGIFQFESDGIRRVLKEMKPTEFEDLVAVLSLYRPGPM 626 Query: 644 QSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLG 703 + + +FI+RK G E + YP H SL+ +LEPTYGI++YQEQVMQ A ++G++LG Sbjct: 627 EQ--ISHFINRKKGTEIVQYP-----HASLQRILEPTYGILVYQEQVMQAASEMAGFSLG 679 Query: 704 GADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAA 763 AD+LRRA+GKK E +A Q+ F +GA G E A ++D +EKFA YGFNKSH+ A Sbjct: 680 EADILRRAIGKKNSETIAAQKEKFVQGAVSKGYKQEDAETVYDYIEKFANYGFNKSHAVA 739 Query: 764 YALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHF 823 YA++SYQ +LKA+YP F A+ + K+ + E ++G+KILPP IN+ F Sbjct: 740 YAMLSYQLAYLKANYPTAFFTALFQNASAKSSKLQDYLVEARQLGIKILPPSINNSFADF 799 Query: 824 HVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLI 883 ND G IV G+ +IKG+ +E+I++ R + G F+ D R + +L LI Sbjct: 800 VANDSGVIV-GLNSIKGIRRDFVESIVKNRYEYGPFKGFQDFAYRMGAQYTKEPLLVALI 858 Query: 884 MSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQP 943 +GAFD G RA L ++ K+ H G+ + +E ++ + Sbjct: 859 NAGAFDEFGETRATLKANVDAVAKSVKFH------------GLNLSLEDDLEVAFTHVEE 906 Query: 944 WPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAA 1003 P + E E LG ++ HP ++Y + + ++ + + GL+V Sbjct: 907 EPLLQRIGEEIEVLGFSISPHPSSKY----DPLMKSGWIQAIQSVFEEGYMRFVGLIVDI 962 Query: 1004 RVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQV 1054 R + T++G ++ TL D SG ++V++F L + Q L+++ ++++ G+V Sbjct: 963 RKISTRKGEKMAYVTLQDASGMIDVVVFPSTLAEIYQHLQQNTMVLMEGRV 1013 >UniRef50_Q67N73 Error-prone DNA polymerase n=1 Tax=Symbiobacterium thermophilum RepID=DNAE2_SYMTH Length = 1085 Score = 525 bits (1353), Expect = e-147, Method: Compositional matrix adjust. Identities = 373/1118 (33%), Positives = 570/1118 (50%), Gaps = 85/1118 (7%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL VHS +S +DG ++ L+ +AA GMPALA+TD N+ G V+F AGI+PI Sbjct: 3 FVHLHVHSPFSFLDGASRLDDLIAEAALHGMPALALTDHNNVSGAVRFQRKAQEAGIQPI 62 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAY---------------QRGYG 110 GA+ ++ HLT+LA GY NL LI+ A+ G+ Sbjct: 63 QGAELTLEGGY------HLTLLATGPKGYANLNRLITAAHLGQEPRATPGAMFALAPGHD 116 Query: 111 AAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170 P L +GLI LSG R G++ +LRG A + Y FP R++LEL Sbjct: 117 RLQPACPLSALSHDTDGLIALSGCRRGEIPSLILRGRLAEAEAAARRYAAWFPGRFYLEL 176 Query: 171 IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230 P E++ A +L EA GLP+V T++V +F H++ + +D P Sbjct: 177 HDERLPGEQALNRALRDLGEALGLPLVVTSNVHHRTREEFFVHDLLTCVRTLTRIDQPHP 236 Query: 231 PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMS-TE 289 R + Q+Y++ E M E F + PEA+ NT+ IA+RC + L P+F T D S Sbjct: 237 ERPLNDQRYLKPPEVMIERFREFPEAVKNTLAIAERCRPVLDLDARLHPEFQTPDGSHPA 296 Query: 290 DYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQ 349 YL +G R + ER++R RLE EL +I ++G+ YFL+V + ++ Sbjct: 297 AYLTHLVYDGAARRYGRI----TERIRR------RLEHELTIITRLGYEDYFLLVWDVVR 346 Query: 350 WSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCME 409 ++++ G+ GRGS A S VAY L ITD+D +E LLFERF++ ER PD D+DF Sbjct: 347 FARERGIRCA-GRGSAADSAVAYCLFITDVDAIERGLLFERFMSLERAQKPDIDIDFDAR 405 Query: 410 KRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGM 469 +RD+V +V YG D V+ + T+ T A++ +RD+G+ +G +D ++K IP G Sbjct: 406 RRDEVAAYVYRKYGADHVASVCTYNTFQARSAVRDLGKAMGFQEADLDYLAKRIPWHAGA 465 Query: 470 -TLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPL 528 + P+L + + + L+ A ++ R G H GG+VI+ + + PL Sbjct: 466 DEILTVMARYPELRQSGIPWHKFEQLVQAAERVARFPRFIGTHLGGLVISRRPLLEVTPL 525 Query: 529 YCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAA 588 +G+ V QFDK VE GLVK D L LRT T ++ A+ I +D Sbjct: 526 QMAAKGQ-VVCQFDKEYVEDLGLVKLDLLSLRTFTAVDDAVRAIGD---------IDYEQ 575 Query: 589 IPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMV 648 IP D +++ML E+ VFQLES + L RL+PD FED++A VA+ RPGP++ MV Sbjct: 576 IPHGDAATYEMLGVGESIGVFQLESPAQRALQARLKPDRFEDIVASVAIIRPGPIKGNMV 635 Query: 649 DNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADML 708 + F+ R+HG+EE++Y H LKP+LE TYG++L+QEQV++IA ++G+T G AD L Sbjct: 636 EPFLARRHGKEEVTY-----LHPKLKPILEKTYGVVLFQEQVIEIATAVAGFTPGEADQL 690 Query: 709 RRAMGK-KKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALV 767 RR M + E+M +F + A G++ +A IF ++ +A YGF ++H+AA+A Sbjct: 691 RRVMTHARNREDMEAIGRLFRQKAAAAGVDPAVADTIFSYIQGYASYGFCEAHAAAFANT 750 Query: 768 SYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVND 827 +Y+T +L HYPAE+ AA+M+A + L E R G+ +LP DIN F V + Sbjct: 751 AYKTAYLVRHYPAEYFAALMSAQPMGYYPINTLAVEARRRGVGLLPVDINRSEEAFTVEE 810 Query: 828 ----------------------DGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDL 865 I G+ A+KGVGE P A I A GG FR L DL Sbjct: 811 WSREAWEAFWGMEPFAPEYPATGKAIRIGLRAVKGVGE-PAAAAILAARDGGEFRSLADL 869 Query: 866 CARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF- 924 RT + R LE L+++GAFDRL +R A + + L+ A++ + GQA + Sbjct: 870 VRRTG-GAVPRGPLEALVLAGAFDRLHSNRRAALWQVAHLLE-AERIRQERGAGQAGLLD 927 Query: 925 GVLAEEPEQIEQSYASCQPWPEQVVLD--------GERETLGLYLTGHPINQYLKEIERY 976 G Q ++ + P + D E E GL + H ++++E Sbjct: 928 GDAPGLGAQAAEALEAASPQGTPAIADFGAAERYLKEYELTGLMVRTH-FMRFVRERLAR 986 Query: 977 VGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALD 1036 G + +++ G+++ AGL V T+ G + +L+D +G +++ +F D Sbjct: 987 EGYLTAQEVRQRRAGELVKVAGLPVCPHRPPTRSGKIVVFLSLEDETGLIDLTIFEDVYQ 1046 Query: 1037 KYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDID 1074 +Y L+ D ++ D G + +T + +D Sbjct: 1047 RYGHLIFTDPRPPLAALGRVDRRGGHVSITVNRLRLLD 1084 >UniRef50_C8NZJ2 DNA polymerase III subunit alpha n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZJ2_ERYRH Length = 1030 Score = 522 bits (1345), Expect = e-146, Method: Compositional matrix adjust. Identities = 356/1063 (33%), Positives = 564/1063 (53%), Gaps = 82/1063 (7%) Query: 7 VHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIV 66 HL V S YS++ G+ + +KA ++A+TD L G + FY A IKPI Sbjct: 12 THLMVRSHYSLLKGMMPVELICEKAKHNESKSIALTDRHVLFGALDFYDAARKHHIKPIY 71 Query: 67 GADFNVQCDLLGDELTHLT-VLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 G + + L DE + + VLA N GYQ L L ++ Y + ++ Sbjct: 72 GMEITI----LEDESYYDSLVLARTNEGYQGLIHLSYLLSKQAYISEADVV------PFE 121 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 185 LI ++ G + +L N V + ++ F YF G +ES + Sbjct: 122 SELIFIAYSEQGPFEKGMLSKNLDEVANTMERLKKMFS--YFY----IGLSHQESGFFSN 175 Query: 186 V-----ELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 V ++A R + VA V + + D +A AI L+D + SP + Sbjct: 176 VNDQLRQMAVLREIECVALPKVYYENKDDEEAFRALQAIDKSTYLED--KTLVSSPNRNF 233 Query: 241 RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTG-DMSTEDYLVKRAKEG 299 S+++ L+ + +L +T IA+ CNV++ + LP+F T ++S + +L + + G Sbjct: 234 ISDDDFKVLYTEAELSLTDT--IAEMCNVSIMNLKTELPEFETHQEVSNKVFLEQLSHFG 291 Query: 300 LEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVG 359 L+ RL P++ Y ERL EL++IN+M F YFLIV + I+++K G+ VG Sbjct: 292 LKRRLNNSVPEK---------YRERLNYELKIINEMNFTDYFLIVYDVIRYAKKAGIYVG 342 Query: 360 PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVA 419 PGRGS AGSLVAY L I ++DP+E+DLLFERFLNPERVSMPD D+DF +KR VI++V Sbjct: 343 PGRGSSAGSLVAYCLGIVEIDPIEYDLLFERFLNPERVSMPDIDIDFPDDKRQYVIDYVR 402 Query: 420 DMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEP 479 + YG D V+ I+TFGT+ A+ RD RVL P VD++SKLI DP M L + Sbjct: 403 NKYGDDYVAHIVTFGTLKARQAFRDTARVLQVPIRKVDQVSKLI--DPMMGLRDNYNKNS 460 Query: 480 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAP-LYCDEEGKHPV 538 + + ++++ +K ++A K+EG+ R+ HA G+V++ + P + D E K Sbjct: 461 RFKSLIQSEDLLKKTFELACKIEGMPRHTSTHAAGIVLSKKPLDVVVPVIQLDSETK--A 518 Query: 539 TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598 Q++ S +E GLVK DFLGLR LTII+ N R N DI +IPLDD+K+++ Sbjct: 519 VQYEMSHLESIGLVKIDFLGLRNLTIID------NISRQINESEAFDIMSIPLDDQKTYE 572 Query: 599 MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658 ++ R+ET VFQLES GMK L+K+++P F D++ VALFRPGP+++ + +++ + Sbjct: 573 LISRAETVGVFQLESDGMKALLKKVKPHKFSDIVDTVALFRPGPMEN--IPLYLENRDHP 630 Query: 659 EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718 E++ Y H+ LK + E T GI++YQEQ+MQ+AQ+++G++L AD+LR+AMGKK + Sbjct: 631 EKVKYI-----HDDLKRITESTNGILIYQEQIMQVAQIMAGFSLARADILRKAMGKKNAK 685 Query: 719 EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778 E+ ++ F +G G A ++F L+ KFA YGFNKSHS AY L++YQ +LKA+Y Sbjct: 686 ELDGLKTEFIQGCIDKGHKETFAEELFSLIYKFANYGFNKSHSVAYGLIAYQLSYLKANY 745 Query: 779 PAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAI 838 P F ++T+ + + K +DEC R + + P ++ + + + I I Sbjct: 746 PHLFYTYLLTSVIGSEVKTRQYIDECRRRKVDLRPVNLEQSRNSYTL-EGYAIRLPFTVI 804 Query: 839 KGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAAL 898 KG+ + I + G + ++ +R + + + E LI +GAFD L R ++ Sbjct: 805 KGISKSIGTKIQNEVHDNGPYLNYYNAISRLNLVGIKKNQFELLIQAGAFDYLNSDRLSM 864 Query: 899 MNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLG 958 + SL +AL+ A+ + E GQ+ + L EP + + VL+ E LG Sbjct: 865 IASLEEALRYANI-IRVEKDGQSSLNMDLISEP------IFTVVSENRRQVLNDELVVLG 917 Query: 959 LYLTGHPINQYLKEIERYVGGVRLKDMHPTE-------RGKVITAAGLVVAARVMVTKRG 1011 Y + HP +RLK H ++ R K +V ++ TK+G Sbjct: 918 FYFSEHP-------------TLRLKKKHESDSLIEVKVRDKYFRIIAMVDRIKLHRTKKG 964 Query: 1012 NRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQV 1054 +++ L D +G ++ ++F DK + LE +++V GQ+ Sbjct: 965 DQMAFIQLSDDTGLIDGVVFPSVYDKIKVNLEIGALVLVKGQM 1007 >UniRef50_C4FWP2 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FWP2_9FIRM Length = 1116 Score = 521 bits (1343), Expect = e-146, Method: Compositional matrix adjust. Identities = 338/1074 (31%), Positives = 545/1074 (50%), Gaps = 46/1074 (4%) Query: 9 LRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA 68 VHS S++ V+ A G L + D +L G + FY AG+K ++GA Sbjct: 3 FNVHSANSLLASTLTIPSYVEAAKERGYQILGLADVHSLQGALDFYNRCQAAGLKAMIGA 62 Query: 69 DFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEGL 128 + L ++ V A N GY L LI + + P D+L + L Sbjct: 63 TIKLPGALKQTQVYPFLVYALNQAGYYELIGLIRRL---SHQPLSPGAIWDYLTQSCHNL 119 Query: 129 ILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIR-TGRPDEESYLHAAV 186 +S G +V ++L+ + E+ F P +L + P E L A Sbjct: 120 FYISCGHASEVEQTLIHSGDQEASLVLERLEQVFGPGNVYLGVAAFPYNPVEGEALKA-- 177 Query: 187 ELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEM 246 A+A +P+V V ++ D + ++ AI TLD R Y ++ E Sbjct: 178 -FAKAYQVPLVVGQGVSTLNQGDAFSLKVLEAIGANETLDVELRAMQGVHYVYNWADLEA 236 Query: 247 CELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGD-MSTEDYLVKRAKEGLEERLA 305 + + + L N+ ++A R V++ + FLP+FPT D + +L + LE+ Sbjct: 237 QYVRLGLADCLTNSRQLADRMQVSLPQNQAFLPKFPTPDHLPASQFLRDLTQSALEDL-- 294 Query: 306 FLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSG 365 R Y +RL+ EL+VI+ MGF YFLIV + I + + + + VGPGRGS Sbjct: 295 --------RPADLAVYQQRLDYELEVIDSMGFSDYFLIVWDIIVYCQSHAIRVGPGRGSA 346 Query: 366 AGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRD 425 AGSLV+Y L IT +DP++++LLFERFLNPER +MPD D+D KR QV+ +V + YG++ Sbjct: 347 AGSLVSYLLGITRVDPIQYNLLFERFLNPERYNMPDIDMDIPDNKRQQVLHYVVERYGQE 406 Query: 426 AVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIY 485 V+QI T GT A+A +RD RVLG + ++ IP + ++L +A++ L ++ Sbjct: 407 QVAQIATLGTFGARAAMRDTLRVLGADSETLRVWARAIPKELDISLPQAYQKSAALRQLV 466 Query: 486 EADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSD 545 E + L +A+ +EG+ R+ HA VVI + P+ + + +TQF D Sbjct: 467 SQSETNQQLFQVAQTIEGLPRHISTHAAAVVIHDQALDQVIPV-VERPNQPLMTQFTMYD 525 Query: 546 VEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSET 605 VE GL+K DFLGLR L +++ ++ + K +A DI AI ++D ++ + + ++T Sbjct: 526 VEKVGLLKMDFLGLRNLNLLDTIIKQVQKSQAD-----FDIEAISMEDAQTLALFRAADT 580 Query: 606 TAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPD 665 VFQ ES G+K ++++LQP+ FED++A+ ALFRPGP++ +D+++ R+HG+E SY Sbjct: 581 NGVFQFESDGIKQVLRKLQPERFEDIVAVNALFRPGPMKQ--IDHYVARRHGKE--SYQA 636 Query: 666 VQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRS 725 + H L+ +L PTYGII+YQEQVMQ+ Q ++G++LG AD+LRRAMGKK+ + MA++R Sbjct: 637 I---HPILEEILAPTYGIIVYQEQVMQVCQRMAGFSLGQADLLRRAMGKKQADVMARERE 693 Query: 726 VFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAA 785 F GA + GI E+A +D + +FA YGFN+SH+ Y+ +++Q +LK HYP F A Sbjct: 694 HFIRGAREQGIEPEIASATYDYIYEFASYGFNRSHAVVYSTLAFQLAYLKVHYPLAFYQA 753 Query: 786 VMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGP 845 ++ N + + E R +L ++N F V+ ++ G+ AI+ + Sbjct: 754 LLNMGSSNQTTMADYILEAKRHTGPLLGLNLNESQIGFSVSGQ-QLQVGLSAIRTLRHDF 812 Query: 846 IEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDA 905 + I+E R G + L R K L LE LI GAFD G +R L+ +L Sbjct: 813 VSHIVEDRQLLGPYTGLLHFMQRLPKKWLKHEWLESLISVGAFDYTGMNRPTLLKNLDKL 872 Query: 906 LKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHP 965 +++ G +F L E +E W D E E LG L GHP Sbjct: 873 MQSVTFSG-----GNLSLFPELEPRIEWVED-------WNPSQKRDKEVEILGFSLEGHP 920 Query: 966 INQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGR 1025 + Y + + + ++D+ + + LV RV+ TK+ + L+D Sbjct: 921 VATYQAFAKSHPNLLSVRDILAAQPNLKVQTLVLVKGIRVINTKKQELMAFLELEDEVAS 980 Query: 1026 LEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREK 1079 + ++F + Y LL++ ++L+V G V D G ++ + + ++E K Sbjct: 981 ISGVVFPQSYRHYVSLLKEGQVLLVEGTVELDR-QGRHQLIIKRLSPVNEQEAK 1033 >UniRef50_Q03F73 DNA polymerase III catalytic subunit, DnaE type n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03F73_PEDPA Length = 1107 Score = 521 bits (1341), Expect = e-146, Method: Compositional matrix adjust. Identities = 373/1171 (31%), Positives = 619/1171 (52%), Gaps = 88/1171 (7%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FV L+V S YS++ K L+ A G A+ +TD + G V+FY A +KPI Sbjct: 3 FVPLQVLSSYSLLSSPIKIDDLIATAKNRGYQAMTLTDHNTMYGTVEFYQACIKNNLKPI 62 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 VG + D L ++A + GY+NL + IS A ++ P D + +L Sbjct: 63 VGLTLWLDSTTGIDNQFALVLIAKSVKGYRNL-MQISSA---KMTSSTPKFVFDDIKDLL 118 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYL--H 183 + LI++ + ++ L RG S E + Y + D E + G +++ + Sbjct: 119 DDLIMIVPAQRSEMIELLERGLSGDATELLENYRQVVGD----EDLYLGINLKQTNIMRQ 174 Query: 184 AAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPK-----------RPR 232 +++AE L + V +++S D A ++ I G + P+ +PR Sbjct: 175 TLMQIAEKHSLGCLPLPSVEYLNSEDHFATQVLKDIASGEVIKHPEILAKDQGNNWLKPR 234 Query: 233 NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDY 291 + ++Y + + EL D +AL + +E+ + + LP+FPT + S Y Sbjct: 235 DVFEKEY--RDAGLSELL-DQLDALTSQIELK------IPFVQPKLPKFPTPANQSAIQY 285 Query: 292 LVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWS 351 L KE ++L E+ + + +Y +RL+ EL VI MGF YFLIV + +Q++ Sbjct: 286 L----KELCFQQL------EKSKNAQNLQYQQRLDRELNVIESMGFADYFLIVHDVVQFA 335 Query: 352 KDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKR 411 N + GPGRGS AGSLVAY L+IT +DP+E+ LLFERFLNPER MPD D+D +KR Sbjct: 336 HQNHILTGPGRGSAAGSLVAYLLRITSVDPIEYGLLFERFLNPERAQMPDIDLDIPDDKR 395 Query: 412 DQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL 471 + ++++V D YG V QIITFGT+AAK IRDV RV G +++IS LIP + +TL Sbjct: 396 ELMLKYVHDKYGHQHVGQIITFGTLAAKQAIRDVARVFGEMPNKINQISALIPSELNITL 455 Query: 472 AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCD 531 +A E +L E E+ + + + AR+LEG+ R+ HA G+V++ +T+ P+ Sbjct: 456 ERALENSSKLQEFIRTSEKNRFMFETARRLEGLPRHYSTHAAGIVLSENNLTETTPVQDG 515 Query: 532 EEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPL 591 EG ++Q+ K+ VE GL+K DFLGLR L+++ L+ +++ + P DI I L Sbjct: 516 NEG-MLMSQYSKNYVERVGLLKMDFLGLRNLSLMANILDQVHQLK-----PDFDIENINL 569 Query: 592 DDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNF 651 +D K+ ++ QR +T+ +FQ ES G+++++++++PD F ++A+ AL+RPGP+++ +D F Sbjct: 570 NDTKTLELFQRGDTSGIFQFESAGIRNVLRKVKPDRFGLVVAVNALYRPGPMEN--IDRF 627 Query: 652 IDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRA 711 + RK RE S+P+ + L +L T+GI++YQEQVM++A + G +LG AD+LRRA Sbjct: 628 VKRKEHREHYSFPN-----DVLSEILGETFGILVYQEQVMEVASAMGGLSLGQADLLRRA 682 Query: 712 MGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQT 771 M KKK + + + R+ F +GA + G NA+L +++ +E FA YGFNKSH+ AY+ +++Q Sbjct: 683 MSKKKHDVIEQMRTNFIDGALQKGYNAKLTQQVYSYIENFANYGFNKSHAVAYSKLAFQL 742 Query: 772 LWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDIN-SGL-YHFHVNDDG 829 +LK ++P F A++ + + K + E R+G+K+ PDIN S L Y F+ Sbjct: 743 AYLKTYFPGPFYTALLNSVIGGEAKTKEYIQELNRLGIKVKAPDINLSQLQYAFY---QQ 799 Query: 830 EIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFD 889 +I+ G +IKG+ I +IE R G F+ + L R K + ++EKLI SG D Sbjct: 800 QIIMGFLSIKGLRRDFIRNLIEERQSNGEFKSVDSLLRRMRDKGITEEIIEKLIFSGTLD 859 Query: 890 RLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVV 949 G +RA L + L + LK A + D+F E+ + + P+ + Sbjct: 860 SFGYNRAELGDFLPELLKGI-----AFSGQNVDLF----------EKLMPTIKHRPDMDL 904 Query: 950 ---LDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVM 1006 LD E E LG Y++ HP+ +Y IE+ G + D E +T + + R + Sbjct: 905 DEKLDWEEELLGTYISAHPVERYANLIEQ--NGFKKIDEFSDEAQ--VTTIVYIRSIRTI 960 Query: 1007 VTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMT 1066 TK+G + + D +G E ++F + ++ ++L R+L + G+V + + GL++ Sbjct: 961 RTKKGESMAFANITDPTGESEAVIFP-RIYQHAKILRNKRVLQLRGKV--EKRNDGLQLI 1017 Query: 1067 AREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARA 1126 E+ + ++ A + + R + +L + G +PV L Y+ D Sbjct: 1018 VNEIT-APQTKQVQAAIWKLEVPSRNNSSEFQTKLFDIFRKYH-GKVPVILVYE--DTNE 1073 Query: 1127 RLRFGATWRVSPSDRLLNDLRGLIGSEQVEL 1157 + ++ S + L L+GS+ + L Sbjct: 1074 HNELSEKFYLNDSSEVKEQLAELLGSQHISL 1104 >UniRef50_B1MYD7 DNA polymerase III, alpha subunit n=3 Tax=Leuconostoc RepID=B1MYD7_LEUCK Length = 1113 Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust. Identities = 359/1175 (30%), Positives = 595/1175 (50%), Gaps = 100/1175 (8%) Query: 9 LRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA 68 L++ S YS++ +++ A A+A+TD + G V+FY GIKP+ G Sbjct: 5 LQILSAYSLLKNPNTITQIIRTAKDRHYGAIALTDINVMYGAVEFYQKAKDMGIKPLFGV 64 Query: 69 DFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEGL 128 V + L ++A N TGYQNL L S A + D L++ +G+ Sbjct: 65 TLQVNGLVNTSTTFPLVLIAENQTGYQNLMWLSSAKMT----AQDTTMTFDLLVDHLQGI 120 Query: 129 ILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVEL 188 +L +S L + Y+E D Y+ +L D+ Y+ +L Sbjct: 121 ------------HVILPHDSELSQLIASEYQE--VDNYWHQL-SNKIDDQHLYIGIHPQL 165 Query: 189 A-----------EARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQ 237 A + +VA +DV ++++ D ++ AI LD K S Sbjct: 166 APQIRARLAQFSQIHQASLVALDDVDYLNADDAFTTQVLKAIDANVKLDGIKALAQQSGS 225 Query: 238 QYMRSEEEMCELFAD---IPEALANTVEIAKRCNVTVRLGEYF-LP--QFPTGDMSTEDY 291 + E++ + + D + A N ++ R +V++ + LP Q P + +Y Sbjct: 226 HVLVDFEQLRQSYQDDEALKLAFKNNEQLVARSHVSLTFKQTTALPPFQLPAETANAAEY 285 Query: 292 LVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWS 351 L A GL ++ ++ +Y ERL EL +IN++GF YFLIV + + ++ Sbjct: 286 LKNLAMTGLNAKMHI-------TSQQHAQYLERLHNELAIINKLGFNDYFLIVWDIVNFA 338 Query: 352 KDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKR 411 K N + +G GRGS AGSLVA++L ITD+DP++F LLFERFLN ERV MPD D+D+ +R Sbjct: 339 KQNHIQLGVGRGSAAGSLVAFSLGITDIDPVKFGLLFERFLNAERVQMPDIDIDWPDNRR 398 Query: 412 DQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--- 468 + V+ ++ YG+ +QIITFGT+AAK +RD RV G + RIS +P Sbjct: 399 EDVLAYLHQKYGQRNFAQIITFGTLAAKQALRDTARVFGVSQTMMSRISNAVPQGKQGRR 458 Query: 469 MTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPL 528 +T+ +A + L + + L+ A+K+EG+ RN HA GVV++ + + + P+ Sbjct: 459 VTIGEALKDSDALSRVLGDIDNGDLLLKTAQKIEGLPRNYSTHAAGVVLSDSPLVNTLPV 518 Query: 529 YCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPP-LDIA 587 E + +TQF+K+ VE GL+K D LGL LTI+ L AK P DI Sbjct: 519 QSGSESR-LLTQFEKNPVEALGLLKIDILGLSNLTILAQTLYY-----AKQYLPDRFDIG 572 Query: 588 AIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGM 647 +PLDDK + + + +T VFQ ES G+K ++K+LQP FE ++A+ AL+RPGP S Sbjct: 573 HVPLDDKATLALYAKGDTNGVFQFESSGIKHVLKQLQPATFEHIVAVNALYRPGP--SRN 630 Query: 648 VDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADM 707 +++FI R+HG+E ++ D SLK +L PT+GII+YQEQVM +A+ +G+TLG AD+ Sbjct: 631 IESFIKRRHGQETVTVLD-----PSLKTILAPTFGIIVYQEQVMLVAEKYAGFTLGEADV 685 Query: 708 LRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALV 767 LR AM KKK +MA F GA G + A +IF +++FA YGFN+SH+ AY+ + Sbjct: 686 LRSAMSKKKLAQMADMHGKFISGAVSQGHDQSQAEQIFAYIDEFANYGFNRSHAVAYSKL 745 Query: 768 SYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVND 827 S+Q ++K HYP F A++ A++ + +K+ V E G+ + P++N + +N Sbjct: 746 SFQLAYMKVHYPIAFFTALLNANLGSPDKIRLYVTEAKARGIVVKAPNVNQSDRFWTINK 805 Query: 828 DGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGA 887 D + G+ +IKGV + A+I+ R G F + L R K R VL +++ +GA Sbjct: 806 DF-LQMGLHSIKGVRTDFVAALIDERKNNGPFESIQSLVRRLPEKFRKRDVLTQMVYAGA 864 Query: 888 FDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQ 947 D G +R L+ +L D ++AA FG L +I++ + E+ Sbjct: 865 LDSFGYNRVELVTALDDLIEAAS-------------FGELILSETKIKK--MADITLTEK 909 Query: 948 VVLDGERETLGLYLTGHPINQYLKEIE----RYVGGVRLKDMHPTERGKVITAAGLVVAA 1003 +V E+ET+G+ L+GHP++ + I+ + + V L E K+I ++ + Sbjct: 910 LV--HEKETIGVNLSGHPLDTFASIIKQNDFQQIADVSL----AKEPVKMIV---MIDSV 960 Query: 1004 RVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGL 1063 R TK+G + T+ D +G + + +F K +L+ ++ ++GQ D + G + Sbjct: 961 RQTRTKKGETMAFVTVSDTTGTISLTIFHQLFVKISDMLKTGNMIQITGQS--DSYKGKM 1018 Query: 1064 KMTAREVM---DIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ 1120 + AR++ I A G D + D++ + + G P+ +++Q Sbjct: 1019 SVIARQITAPPQIPTAES----GTWFLRFDEEHDNEANRQAVIEIFKKHHGDNPIIIHWQ 1074 Query: 1121 RADARARLRFGATWRVSPSDRLLNDLRGLIGSEQV 1155 ++D ++ A + ++ ++ +L L+G + + Sbjct: 1075 KSDQNQQI--DAKFWMNSETAIIRELAPLLGYDNI 1107 >UniRef50_UPI00016C4B8A DNA polymerase III alpha subunit n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4B8A Length = 1617 Score = 514 bits (1325), Expect = e-144, Method: Compositional matrix adjust. Identities = 298/791 (37%), Positives = 459/791 (58%), Gaps = 46/791 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F HL +H+ YS++DG + PLVK+ LGM A+AITD NL G ++FY GIKPI Sbjct: 5 FCHLHLHTHYSLLDGFNRIQPLVKQTKELGMNAVAITDHGNLYGAIEFYMECKKGGIKPI 64 Query: 66 VGADFNVQCDLLGD-----EL---THLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIID 117 +G + + D EL THLT+LA N TG++NL L S AY G+ P ID Sbjct: 65 IGYEAYLAPGSRLDRDSKGELGFSTHLTLLAQNETGFKNLIKLSSSAYLEGF-YRNPRID 123 Query: 118 RDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPD 177 R L +GLI LSG G+ + +++ ++ ++ + F + YF+E+ G Sbjct: 124 RQILEAHKDGLICLSGCLAGEFNQYIIKDKPQEAEKTAKWFRKVFGENYFIEIQNNGIGL 183 Query: 178 EESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR---PRNY 234 ++ A ++A G+P+VAT D ++ + D AH+I I+ + DP++ P Sbjct: 184 QDQCTPVAADIANRLGVPLVATADAHYLCAEDAQAHDILFCINTR-QMHDPRKKKYPEER 242 Query: 235 SPQQY-MRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMST-EDYL 292 P Y +RS E+M LF + +A+A + EIA + N+ + + P F T + T E YL Sbjct: 243 MPNPYFVRSPEDMYRLFPNYQDAVARSQEIADKVNIDLDFKKRHFPVFTTPEGRTPEQYL 302 Query: 293 VKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSK 352 + + G+EER K +RL+ EL +I +MGF YFLIV +F+++++ Sbjct: 303 RELCERGMEERY---------EGKASEAVRKRLDHELGIIARMGFSSYFLIVWDFVRFAR 353 Query: 353 DNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRD 412 + G+P RGSG G++V Y L ++ + P+E+DLLFERFL+P R PD D+DFC ++R+ Sbjct: 354 EEGIPC-TARGSGCGAIVCYLLYMSHVCPIEYDLLFERFLDPNRSEAPDIDIDFCQDRRE 412 Query: 413 QVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGM--T 470 VI++V YG ++V+QI TFGT+AAKA ++DVGRVLG ++ + KL+P + + Sbjct: 413 LVIDYVKKKYGEESVAQIGTFGTLAAKAALKDVGRVLGQTPDRMNALCKLVPMKGAISKS 472 Query: 471 LAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLY- 529 L +A + P Y+ D +K ++D+A KLEG RN GKHA GVVIA +T++ P+ Sbjct: 473 LQEALDESPDFKREYDQDPSIKQVVDIALKLEGANRNVGKHAAGVVIANGPVTNYVPVQR 532 Query: 530 -----CDEEGKHP----VTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNG 580 +EG TQ++ +E GL+K DFLGLR LT+++ +++I K R Sbjct: 533 PPKKGGSDEGSDDTTTMTTQWEMGILEKVGLLKMDFLGLRNLTVLDNCVKLIKKTRGITV 592 Query: 581 EPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRP 640 EP PL D+ ++ +LQR + VFQLES G+++L+KR++PD D+IA++AL+RP Sbjct: 593 EP----TKFPLTDEATYQLLQRGDAKGVFQLESEGIRELLKRMKPDNIRDLIAVLALYRP 648 Query: 641 GPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGY 700 GPL+ GMVD +++ K+ R++ YP H ++ VL T+ +++YQEQ+M+I L G Sbjct: 649 GPLEGGMVDEYVECKNKRKQPFYP-----HPVMEEVLSETFAVMVYQEQIMRILNKLGGI 703 Query: 701 TLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSH 760 L A +A+ KK E + ++ F GA++ G+ AE A +IF+L+ KF GYGFNK Sbjct: 704 ELAKAYACIKAISKKNFEIINARKVDFVTGAKERGLEAEKADEIFELIVKFGGYGFNKCV 763 Query: 761 SAAYALVSYQT 771 A + +T Sbjct: 764 VAGTEVTDAET 774 Score = 195 bits (496), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 123/418 (29%), Positives = 225/418 (53%), Gaps = 21/418 (5%) Query: 753 GYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEK---VVGLVDECWRMGL 809 G + SH+AAYA + YQT +LK HY AE+MAA++++++D+ K + + + R+G+ Sbjct: 1202 GLIVHNSHTAAYAQIGYQTAYLKTHYTAEYMAALLSSEIDDGNKRDVFIDHISDARRLGV 1261 Query: 810 KILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCART 869 +LPPD+N G+ F V ++ I++G+ AIKGVG G I+ ARN+GG F++LFD C R Sbjct: 1262 DVLPPDVNRGMADFDVLNN-RIIFGLTAIKGVGRGAALEIVRARNEGGKFKDLFDFCERV 1320 Query: 870 DTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAE 929 D + + + +E +I +GAFD G R+A ++ A ADQ A + GQ +F + E Sbjct: 1321 DRRIIAKAAVEGMIQAGAFDVFG-KRSAQFAAVAKAYAVADQRAAEKRKGQTGLFDDVEE 1379 Query: 930 EPEQ--IEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVG---GVRLKD 984 + Q WPE L E+E LG Y++ HP+ Q+ +++ R+ GV K Sbjct: 1380 AADAGPTNQGLTDVPEWPETERLKFEKEALGFYISSHPLAQHDEQLRRFRTHDCGVLAKG 1439 Query: 985 MHPTERGKVITAAGLVVAARVMVTKRGNRIG----ICTLDDRSGRLEVMLFTDALDKYQQ 1040 + G AG++ V +G IG + ++D +G + ++++D ++++ Sbjct: 1440 ---GKNGTEARIAGMITNLDVRTANKGRNIGRKYAMFRIEDFTGSVRCIMWSDEYSRFRE 1496 Query: 1041 LLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQL--L 1098 L+ D + I G +++ ++++ ++EAR ++ + L + + ++D+ L L Sbjct: 1497 LVSSDTVAIFEGVLNWAPDRAEPDFGVKKLITMEEARTEFTKSLVLKVAYSEVDEDLRKL 1556 Query: 1099 NRLRQSLEPHRSGTIPVHLYYQRADAR-ARLRFGATWRVSPSDRLLNDLRGLIGSEQV 1155 + L+ +R G PV+L + + + +L+ ++V+P+ L +L L+G V Sbjct: 1557 EAVSVILKRYR-GPCPVYLSIRDGNGKQVQLKMSEEYKVNPAAVKLEELEMLLGQGSV 1613 >UniRef50_C8WVC5 DNA polymerase III, alpha subunit n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WVC5_ALIAD Length = 1039 Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust. Identities = 359/1072 (33%), Positives = 545/1072 (50%), Gaps = 53/1072 (4%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL HS YS +DG + LV +AAA GMPALA+TD + G +F+ G+KPI Sbjct: 2 FVHLHCHSPYSFLDGASSIEALVAQAAAQGMPALALTDRNTIAGQPEFHRLAAAYGVKPI 61 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 GA+ ++ + + L VLA + TG+++L L+++ + A P + L E + Sbjct: 62 AGAELTME------DGSQLVVLAEHATGFRHLCELLTRMHVDARDRADPRLREADLFERS 115 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 185 EGL++LSGG G V R+L R V Y F DR++LE G P + Sbjct: 116 EGLLILSGGLRGFVQRALARRAYGDARRFVERYRNVFGDRFYLEWTADGLPGCARRMRDL 175 Query: 186 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 245 ++LAEA G+P VA +VR + H++ I G L P R ++ Y+ E E Sbjct: 176 LDLAEATGVPAVAATEVRAASPEEVAVHDVLTCIRVGCDLQTPHPERPFNRLGYLHDEAE 235 Query: 246 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKEGLEERLA 305 FA P A+A TVEIA+RC+ P FP +Y + G+E Sbjct: 236 AMRRFAQDPRAMARTVEIAERCS----------PVFPAEGPLFPEYRDASGRGGVELLEQ 285 Query: 306 FLFPDEEERL-KRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGS 364 ++ +R K PE RLE E +I +G+ YFL+V + +++++ G+ GRGS Sbjct: 286 LVWQGARKRYGKVSPELQMRLEHEFAIIRDLGYADYFLVVWDIVRYARSRGIRCA-GRGS 344 Query: 365 GAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGR 424 A S+VAY L +TD+D L +LLFERFL+ ER PD D+DF ++RD+VI++V YGR Sbjct: 345 AADSVVAYCLYLTDVDALNRNLLFERFLSRERAERPDIDIDFASDRRDEVIDYVYRRYGR 404 Query: 425 DAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGM-TLAKAFEAEPQLPE 483 D V+++ T+ T A++ +R+VGRV G P +D+++K IP + +A E P+L + Sbjct: 405 DRVARVATYQTFRARSAVREVGRVFGIPEELLDQLAKRIPWSTHADEIEEALERVPELRD 464 Query: 484 IYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDK 543 + ++ ++R++ G R G H GG+VI+ + L G +T +DK Sbjct: 465 FQPYRRAFQWMLAVSRQIAGFPRYFGTHTGGIVISGEPLMKVTSLQPSASG-WLITPYDK 523 Query: 544 SDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRS 603 +E GLVK D L LRT+ + AL + R +D IP+DD+ +F ++R Sbjct: 524 RLLEDVGLVKLDLLSLRTMAAVEGALRLGTAR-------AVDYDHIPMDDEATFASIRRG 576 Query: 604 ETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISY 663 +T VFQLES + L RL + ED++A VAL RPGP+Q MVD F+ R+ G E +SY Sbjct: 577 DTIGVFQLESPAQRALQVRLGAESLEDLVASVALIRPGPIQGNMVDPFLARRRGLEPVSY 636 Query: 664 PDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE-EMAK 722 H L+P+L TYG++L+QEQV++IA ++G+T G AD LRR M + EM + Sbjct: 637 -----LHPKLEPILGKTYGVVLFQEQVIEIATAIAGFTPGEADELRRVMSHARSRAEMEQ 691 Query: 723 QRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEF 782 F + A + G+ E A +F V +A YGF ++H+AA+A +Y+T +L H+PA F Sbjct: 692 IGERFVQKAVRQGVPLETAKTLFSYVRGYASYGFCEAHAAAFATTAYKTAYLIEHHPASF 751 Query: 783 MAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVG 842 AAV+ + E R G++ILP DIN + V + I G I+ Sbjct: 752 FAAVLNQLPMGYYPAHVICAEARRRGVRILPVDINESEWDAGVPEPDAIRLGFRLIRSFS 811 Query: 843 EGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPH-RAALMNS 901 E A++E R G FR L D R + + E+LI +GAFDR+ R L+ Sbjct: 812 ERVARALVEERQAFGSFRSLADAVMR--LPQADALHFERLIRAGAFDRVESRDRRELLWQ 869 Query: 902 LGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVV---LDGERETLG 958 L L + A A +F ++ P E + Q P + + E LG Sbjct: 870 LPRWLALRKEKALA-------LFDTIS-APSPAEDAIRLPQSMPPMSLAERIADEYSVLG 921 Query: 959 LYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICT 1018 + ++GH ++ Y +E R G L + G + AGL + TK G + T Sbjct: 922 VGVSGHWLSLY-REALRNEGYCTLAEAGEKREGARVKVAGLSIRPHRPPTKSGKTVVFFT 980 Query: 1019 LDDRSGRLEVMLFTDALDKYQQLLEK--DRILIVSGQVSFDDFSGGLKMTAR 1068 L+D +G + ++F + +L R++ +SG + + GGLK R Sbjct: 981 LEDETGIADAVMFETVYRREGAVLFTPFGRLIGLSGVI---ERRGGLKGQIR 1029 >UniRef50_C3RQQ8 DNA polymerase III subunit alpha n=1 Tax=Mollicutes bacterium D7 RepID=C3RQQ8_9MOLU Length = 1034 Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust. Identities = 323/922 (35%), Positives = 498/922 (54%), Gaps = 93/922 (10%) Query: 193 GLPVVATNDVRFIDSSDFDAHEIRVAIH---DGFTLDDPKRPRNYSPQQYMRSEEEMCEL 249 G VATND+ +++ I ++++ DG +D+ +Y+ + Y ++E+EM ++ Sbjct: 58 GYMYVATNDIYYLNKEHALHRSIGLSMNPNPDG--IDEYSNYVDYNSEFYFKTEKEMEKV 115 Query: 250 FA----DIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGD-MSTEDYLVKRAKEGLEERL 304 F+ P+ L N+ +I K+CN V + E LP+FP + S+E YL K EG +E+ Sbjct: 116 FSAYLHKYPDLLTNSEKIVKQCNAQVPI-ERALPEFPLPNGFSSEQYLYKLVWEGFKEK- 173 Query: 305 AFLFPDEEERLKRRP--EYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGV------ 356 FP+E R +Y ERLE E I +MGF YFLIV +FI WSKD V Sbjct: 174 ---FPNESAIDNRFTLEDYKERLEHEFDTIVKMGFVDYFLIVQDFINWSKDIEVYKHPEV 230 Query: 357 ---------------------PVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPE 395 VGPGRGS AGSL+AY LKIT+LDP+++DLLFERFLNPE Sbjct: 231 YFPHIELSKVSKMCIEKNFEIKVGPGRGSAAGSLLAYCLKITNLDPMKYDLLFERFLNPE 290 Query: 396 RVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGF 455 RVSMPD D+DF R++V+E+V + YG V+QI+TF + K++I+ V + G PY Sbjct: 291 RVSMPDVDIDFSNRDREKVVEYVQNKYGYSHVAQIVTFQKLKLKSIIKKVAKSYGIPYSK 350 Query: 456 VDRISKLIPPDPGMTLAKA------FEAEPQL----------PEIYEADEEVKALIDMAR 499 D ++K+IP ++ K E EP+L + D+++K + M + Sbjct: 351 TDEMTKMIPGKICVSTEKEDGTIEIVEKEPELLCEIENIDYFSNLINKDDDIKLVFKMGK 410 Query: 500 KLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGL 559 LEG+T GKHA GV+I + + PL E VTQF+K E GL+K DFLGL Sbjct: 411 VLEGLTSTTGKHAAGVIIGRQPLQSYLPLM--EVDGVLVTQFEKKASESIGLLKMDFLGL 468 Query: 560 RTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDL 619 +TL II E++ +N + I I ++D+K+F++ Q+ T VFQ E GMK+L Sbjct: 469 QTLDIIQETEELV----KENYNQIIHINDISIEDEKTFEIFQKGNTGRVFQFEGAGMKNL 524 Query: 620 IKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEP 679 +K++ P E + A AL+RPGP+ + N+I+ + +I YP HE K V E Sbjct: 525 LKQMHPTSLEHLNAACALYRPGPMD--YIPNYIEGRKFPNKIDYP-----HELFKEVAEE 577 Query: 680 TYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAE 739 T+GI++YQEQ+MQ+ Q ++G++LG AD+LRR + KK+ + + K R F +G +K + E Sbjct: 578 TFGILVYQEQIMQLVQKMAGFSLGEADILRRGISKKEKDYLDKARKQFVDGCKKINVAEE 637 Query: 740 LAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVG 799 + KI+D +E FA YGFNKSHS AY+ VSYQT WLKAH+P FMAA +T N +KV Sbjct: 638 TSSKIYDTIELFAEYGFNKSHSCAYSYVSYQTGWLKAHFPEAFMAANLTVAAQNKDKVAA 697 Query: 800 LVDECWRMGLKILPPDINSGLYHFHV-NDDGE--IVYGIGAIKGVGEGPIEAIIEARNKG 856 ++ EC +M +++LPPDIN F + N +G+ I +G AI+ VGE + K Sbjct: 698 ILSECKKMQIEVLPPDINKSEDKFTLENKNGKMCIRFGFNAIQDVGEQFAKQCSRKNKKS 757 Query: 857 -GYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKA 915 F+E + + +L + L +I SGAFD G R AL L + L+ + Sbjct: 758 LTSFQEFLN---ELNISQLRKDTLTFMINSGAFDNYGT-RLALNKELENLLEYEKAKKRI 813 Query: 916 EAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIER 975 +G + + +Y +P ++ E+E + L+GH ++ Y + Sbjct: 814 NLVGYKFVLSLPT-------NNYFDGYEYPLDKLVSNEKEAIHFSLSGHILDGYRNLYQE 866 Query: 976 YVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDAL 1035 +K + + ++ G++ + + TK+G+++ +L+D +G LE ++F Sbjct: 867 KTAIADIK-IDQSYYDSYVSVLGIIKNIKQITTKKGSQMAFLSLEDETGELEGVIFPKDF 925 Query: 1036 DKYQQLLEKDRILIVSGQVSFD 1057 +K ++ + + V+ V FD Sbjct: 926 EK----IKNNYLKFVNLPVIFD 943 >UniRef50_B7CD33 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CD33_9FIRM Length = 989 Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust. Identities = 333/1034 (32%), Positives = 543/1034 (52%), Gaps = 83/1034 (8%) Query: 34 LGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVQCDLLGDELTHLTVLAANNTG 93 LG + +TD + G ++FY + I+G + + + +E H +LA N+ G Sbjct: 8 LGYNHVCLTDHNVMYGTMEFYQLCKKHNVHAIIGLEVD---SIYNEEPFHFILLAKNDMG 64 Query: 94 YQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGN-----S 148 QNL L S + + D +I+ + ++L+ D + + S Sbjct: 65 LQNLYKLSSIIKEN--------VSFDEVIKYAKDCVVLTSSDGKDTFSAYIEHQDLEKLS 116 Query: 149 ALVDECVAFYEEHFPDRYF-LELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDS 207 A V+ C + F D Y + + +G+ ++ ++ + VA + + + S Sbjct: 117 AFVELC----KNSFSDFYVSISMNDSGKKRVDN------KILKQLDCKCVALSRILYEKS 166 Query: 208 SDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRC 267 D + + AI ++++ + Q+Y+RS +EM L+ + L T +IA+ C Sbjct: 167 EDVKSLQALRAIAKQTSIENQGLDVQF--QRYLRSPQEMEALYDECD--LLATEQIARMC 222 Query: 268 NVTVRLGEYFLPQFPTG-DMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLE 326 NV + + LP F + + DYLVK K+GLE+RL Y RLE Sbjct: 223 NVQMAFQKSKLPVFENKLHIDSSDYLVKLCKKGLEKRL---------NGNLDAVYMNRLE 273 Query: 327 TELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDL 386 EL VI MGF YFLIV +FI++++ + VGPGRGS AGSLVAY L IT +DP++ +L Sbjct: 274 YELSVIINMGFTDYFLIVWDFIRYARSKDIFVGPGRGSAAGSLVAYCLGITHIDPIQNNL 333 Query: 387 LFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVG 446 LFERFLNP R+SMPD D DF ++RD+VI +V +YG+D VS I+TF T+ A+ IRDVG Sbjct: 334 LFERFLNPSRISMPDIDTDFPDDRRDEVIRYVRKLYGQDHVSHIVTFNTLQARQAIRDVG 393 Query: 447 RVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTR 506 RV+ P VD +SK++ P +TL +A+ + ++D+++ L M +EG+ R Sbjct: 394 RVMNIPARIVDELSKMLKNTPKITLMQAYNDNALFRKRIQSDQKLIELFQMCVSIEGLPR 453 Query: 507 NAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIIN 566 + HA G+V++ I + PL +G TQF +E GL+K DFLG+R LT I+ Sbjct: 454 HTSLHAAGIVLSDQPIVNVCPL-VSVDGDIQATQFTAEYLEDLGLIKMDFLGIRNLTTIH 512 Query: 567 WALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPD 626 + + +++ LD+ I L D K++ +L T VFQLES G+ L++++QP+ Sbjct: 513 EIVTNLKEQK----HISLDMMKINLKDAKTYQLLSLGNTLGVFQLESSGITTLLQKIQPN 568 Query: 627 CFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILY 686 ED+ ++AL+RPG +Q +D +I+RK ++ YP H L+P+L+ TYGI++Y Sbjct: 569 KIEDISVVLALYRPGAMQH--IDTYIERKKDPSKVVYP-----HPLLEPILKETYGIMIY 621 Query: 687 QEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFD 746 QEQVMQ AQV+ G++L AD LR+AM KKK + M + F GA KN I ++ +IF Sbjct: 622 QEQVMQTAQVIGGFSLAQADTLRKAMSKKKLDVMQNLKEQFILGARKNRIKDSVSNEIFS 681 Query: 747 LVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWR 806 ++E+FAGYGFNKSHS AY+LV+YQ +LKA+YP F +++ + + + K + EC R Sbjct: 682 IMEQFAGYGFNKSHSYAYSLVAYQMAYLKANYPLYFYQSLLNSVIGSGIKTSQYIYECKR 741 Query: 807 MGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLC 866 + + DIN F+ + I + +KGVG+ IIE + +LFD Sbjct: 742 RNIVVNGCDINHS-KAFYTIEQNSIRMPLQVLKGVGKTIYPTIIEHVP----YTDLFDFL 796 Query: 867 ARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGV 926 A+ K+N + LI GA D G +RA L +L + + V Sbjct: 797 AKASMYKINESTIRILIDGGALDCFGYNRATLNENLRKLMDYVN--------------IV 842 Query: 927 LAEEPEQIEQSYA-----SCQPWPEQVVLDGERE--TLGLYLTGHPINQYLKEIERYVGG 979 E+P + ++ Q E + ++E G Y++ HP+ Q L+ + +Y Sbjct: 843 RIEDPNDLRFDFSIVSRPGIQRIKENPIQKAQKEQYVYGFYVSEHPV-QSLR-MHKYPNC 900 Query: 980 VRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQ 1039 + L ++ R + V + R TK+G+ + +++D +G+++ ++ ++ + Sbjct: 901 IPL--LNAVNRDGYMNILVRVASFRTHKTKKGDWMCFMSVEDEAGKMDAVIMPRLYEQQK 958 Query: 1040 QLLEKDRILIVSGQ 1053 + ++KDRI ++ G+ Sbjct: 959 ENIQKDRICLIQGK 972 >UniRef50_C6I172 DNA-directed DNA polymerase n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6I172_9BACT Length = 1109 Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust. Identities = 347/1019 (34%), Positives = 528/1019 (51%), Gaps = 86/1019 (8%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGL---VKFYGAGHGAG 61 +F HL H+ YS++DG+ K LV+++ G+ AITD NL L ++ + G Sbjct: 7 KFSHLHTHTQYSILDGMNKIPKLVEQSVESGIGGFAITDHGNLFALPEVLREQKTANERG 66 Query: 62 IKPIVGADFNVQCDLLG----DELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIID 117 +K +G +F V D L + HLT +A NN G ++L L +KAY G+ + P ID Sbjct: 67 VKIAMGCEFYVTDDRLQKNKESDTYHLTAIAKNNVGLESLMKLSTKAYTEGF-YSHPRID 125 Query: 118 RDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPD 177 D L E GLI+LSG G V ++L GN A + V Y + F D YFLE++ + Sbjct: 126 LDLLSEHKNGLIVLSGCLGGQVAQALKDGNKAKAMDLVGAYHDIFGDNYFLEVMPLEIRE 185 Query: 178 EESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQ 237 + A E+++ G+ V T D + + AH+ +AI G L DP R R + + Sbjct: 186 QIDVNAAISEISKRTGIETVTTCDCHYQKKEHYAAHDTWLAIQTGSLLSDPDRFRFSTDR 245 Query: 238 QYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAK 297 Y ++ EE+ E + A + + + + R+ Y + D + + +++ A Sbjct: 246 AYFQTPEEVLE---NSKGAGLDESSMLRTSMIMERISGYEI------DKALKMPVIENAH 296 Query: 298 EGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVP 357 E L E +AF +++ L RP+Y ERLE EL VI ++GF YFL+V + IQ +K+NG P Sbjct: 297 EKLRE-MAF-SGLQKKGLLNRPDYRERLEYELDVIGKLGFDSYFLLVQKIIQIAKNNGTP 354 Query: 358 VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEH 417 GPGRGS AGSLV + L ITDLDP++ L+FERFLNP RVS PD D+D + R VI Sbjct: 355 TGPGRGSAAGSLVVWVLGITDLDPIKHGLIFERFLNPARVSPPDIDLDIGTKGRGGVIRS 414 Query: 418 VADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEA 477 + + YG V+ I+T G K V++DV R G + + + GM F Sbjct: 415 IVEEYGTARVATIMTLGLALDKMVLKDVMRTEGISFAEANVATT------GMKTLDDF-- 466 Query: 478 EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCD---EEG 534 P P +E +++ A+ L G RN G HA G+VI+P + PL EE Sbjct: 467 SPATPTEHE-------VLERAKVLNGTVRNIGTHAAGIVISPEPLYGKVPLMSSKVAEEN 519 Query: 535 KHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDK 594 Q D V+ G +K D LGL+ L I L+ ++KR G P + DK Sbjct: 520 GILQLQLDMKAVDEWGYIKVDVLGLKELDI----LKDLSKR---TGADPKQEEF--MHDK 570 Query: 595 KSFDMLQRSETTAVFQL-ESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFID 653 + +M+ ETT VFQL S GMK +++ ++ D F D+ A ++LFRPGPL+SG+V +I Sbjct: 571 DTLEMISVGETTGVFQLGTSEGMKRMLRDMKCDSFNDVCAALSLFRPGPLESGIVAQYIR 630 Query: 654 RKH-GREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAM 712 K + P + + ++L L TYG+ +YQEQ+M++ ++L+G+ + AD+LR+AM Sbjct: 631 NKELSKNGEPIPSLNPRTDTL---LAETYGVPIYQEQIMEMGKILAGFDMKEADLLRKAM 687 Query: 713 GKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTL 772 GKKKPEEMAK + + G KNGI+ + A+++F+ VE F+GYGFNKSHSAAYA+ S + Sbjct: 688 GKKKPEEMAKMKEKWVSGCLKNGISEKEALELFEKVEHFSGYGFNKSHSAAYAITSMKMA 747 Query: 773 WLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDI---NSGLYHFHVNDDG 829 W K HYPA + AA ++ + D + V + + R G+ ++PP I + L+ H ++ Sbjct: 748 WYKCHYPAHYWAAKISHENDVESRGV-MAESAKREGIVVVPPRICVEENTLFKKHTGNNQ 806 Query: 830 E------------------IVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDT 871 E IV GI +KGV EG EA+ N G F+ + D+ R Sbjct: 807 ETSHYPDLCAVIDHNGEDRIVLGIETLKGVSEGVAEALSIETNLEGPFKSMQDVYDRLVV 866 Query: 872 KK------LNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALK------AADQHAKAEAIG 919 K+ LN+R + L G FD + R A+++ + K + + Sbjct: 867 KREDRPPILNKRSMVALTAVGFFDPIYKDRKAVLSWIESKYKEPGSIPCLEPPKRKRTKK 926 Query: 920 QADMFGVLAEEP-EQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYV 977 QA++F E+ Q E+ + P + V ++ ++ + G ++ EIER V Sbjct: 927 QAEIFTSQEEKKVVQQERIAETTSPKKKNVTIETDKLNSEVACAGTVLSGSKTEIERVV 985 >UniRef50_Q114C9 DNA polymerase III, alpha subunit / Intein n=28 Tax=Bacteria RepID=Q114C9_TRIEI Length = 2684 Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust. Identities = 283/732 (38%), Positives = 426/732 (58%), Gaps = 68/732 (9%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FV L +HSDYS++DG ++ L+ +A LGMPA+A+TD + G ++ IKPI Sbjct: 3 FVGLHIHSDYSLLDGASQLPQLIDRAVELGMPAIALTDHGVMYGAIQLIKLCRNKNIKPI 62 Query: 66 VGADFNVQCDLLGD-------ELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG----P 114 +G + V + GD + H VLA N GY+NL L + ++ G+ G P Sbjct: 63 IGNEMYV---IKGDIEKQQRGKKFHQVVLAKNTQGYKNLVKLTTLSHLHGFQGKGIFARP 119 Query: 115 IIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTG 174 I+++ L + +EGLI+ SG G+V ++++RG + +Y++ F + Y+LE+ G Sbjct: 120 CINKELLEKYHEGLIVTSGCLAGEVPQNIMRGELEEAKKIAKWYKDLFGEDYYLEIQDHG 179 Query: 175 RPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNY 234 ++ V +A+ + +VATND FI D +AH+ + I+ + + KR R Y Sbjct: 180 FQEDRVVNTGIVTIAKKLKIKIVATNDSHFISCRDVEAHDALLCINTQKLIAEEKRMR-Y 238 Query: 235 SPQQYMRSEEEMCELFAD------IPEALANTVEIAKRCNVTVR-LGEYFLPQFPTG-DM 286 S +Y++S EEM +LF D I EA+ANT+E+A + LGE +P +P D Sbjct: 239 SGTEYLKSAEEMKQLFRDHLENEVIEEAIANTLEVANKVKAYEGILGEPRIPDYPIPPDH 298 Query: 287 STEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVME 346 + + YL K A GL ERL +++ + P Y ER+ETEL+V+ GF YFL+V + Sbjct: 299 NADTYLEKLAWSGLLERLKL-----KQKSEISPIYKERMETELKVLQDKGFSTYFLVVWD 353 Query: 347 FIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 406 +I++++DN +PVGPGRGS AGSLVAY+L+IT++DP+ LLFERFLNPER SMPD D DF Sbjct: 354 YIKYARDNNIPVGPGRGSAAGSLVAYSLRITNIDPVHHGLLFERFLNPERKSMPDIDTDF 413 Query: 407 CMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIP-- 464 C+E RD +I++V YG + V+QIITF M +KAV++DVGRVLG +G ++++KLIP Sbjct: 414 CIENRDVMIKYVTQRYGEERVAQIITFNRMTSKAVLKDVGRVLGISFGEANKMAKLIPVA 473 Query: 465 ---PDPGMTLAKAFEAEPQLPEIYEADE--------------EVKALIDMARKLEGVTRN 507 P + P+ + Y+ E V+ IDMA ++EG + Sbjct: 474 RGKPAKLKVMISDETPSPEFKKAYDNQETPIEDNKAGKISTISVRQWIDMAIRIEGTNKT 533 Query: 508 AGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINW 567 G HA GVVI+ + + PL + +G +TQ+ D+E GL+K DFLGL+ LTII Sbjct: 534 FGVHAAGVVISKEPLDEIVPLQRNNDGS-VITQYHMEDIESLGLLKMDFLGLKNLTIIQN 592 Query: 568 ALEMINKRR---------AKNGEPPLDIAA------IPLDDKKSFDMLQRSETTAVFQLE 612 E+I K N ++I A +P D KK++D+++ + VFQLE Sbjct: 593 TAELIKKNHHLPLVPDDLPANERKAIEILAKGNTKKMPEDVKKTYDLIKSGDLEGVFQLE 652 Query: 613 SRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHES 672 S GM D++K+L+P ED+ +++AL+RPGPL +G++ FIDRKHG E+I Y QH Sbjct: 653 SSGMVDVVKKLKPTSIEDISSILALYRPGPLDAGLIPKFIDRKHGSEKIEY-----QHPK 707 Query: 673 LKPVLEPTYGII 684 L+P+L+ TYG++ Sbjct: 708 LEPILKETYGVL 719 >UniRef50_C6UN37 DNA polymerase III, alpha subunit n=1 Tax=Candidatus Hodgkinia cicadicola Dsem RepID=C6UN37_HODCD Length = 995 Score = 495 bits (1274), Expect = e-138, Method: Compositional matrix adjust. Identities = 326/920 (35%), Positives = 473/920 (51%), Gaps = 40/920 (4%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FV+L+V S YS++D + + AA G PA+A+TD T+L G ++F AG+KPI Sbjct: 7 FVNLKVRSTYSVLDSTLSVDRIAQLAAERGQPAVALTD-TSLHGALEFCVKCDAAGVKPI 65 Query: 66 VGADFNVQCDLLGDELTHLTVLAA--NNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIE 123 VG V C L V A + GY NL L++ + GA I L Sbjct: 66 VGCKLLVDCQHAVASAPPLLVTLAVKSEKGYANLLKLVNNSE---VGARHHKITLAALAA 122 Query: 124 LNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLH 183 +GL+ ++G G V + + A ++ E+ R G Y Sbjct: 123 SAQGLLAIAGEAGGMVWQLYKKLGFEGASTAFALLQDSMEGSVCAEVQR-GAVVWPEYEQ 181 Query: 184 AAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSE 243 A VE A A L +VATN+ F +DF+ +++ AI + S + +S Sbjct: 182 AVVEAAGALSLMLVATNETLFETRADFEVYKVLRAI-------SSRDEVGASEHNFFKSY 234 Query: 244 EEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKEGLEER 303 +M FAD+P+ALA T +++ C ++ LP F L +A LE + Sbjct: 235 ADMLSRFADMPKALAATAKVSALCEFRLQARAVTLPAFSGAVRREARALYTKAVRALEHQ 294 Query: 304 LAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRG 363 + +P Y RL EL VI + + GYFLIV +F W+K + V VGPGRG Sbjct: 295 F------YKVGKANKPWYHRRLLWELGVITRASYSGYFLIVSDFTLWAKAHNVYVGPGRG 348 Query: 364 SGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYG 423 S AGSLVAY+L +T++DP+ LLFERFLN +R +PD DVDFC + R+QV+ + YG Sbjct: 349 SAAGSLVAYSLGVTNVDPIAHGLLFERFLNADRAGLPDIDVDFCHQGREQVVRYAQFKYG 408 Query: 424 RDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPE 483 V QI TFGT+ +A I+DV R L P+ + + K + P G L + A + Sbjct: 409 ELCVGQISTFGTLQVRAAIKDVSRCLEVPFETANALCKAV-PTYGRGLESVYAALARTAL 467 Query: 484 IYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDK 543 + E + L+ + KL GV R HA G+VI+ +++ D P DE + V ++ Sbjct: 468 V--PAELLAKLMAVTEKLIGVYRLVSTHAAGLVISNSQLRDSVPTAWDEANRVSVVRYSM 525 Query: 544 SDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRS 603 + VE AGL KFD LGL+TL ++ L + R +++ +K+F ++ Sbjct: 526 NWVESAGLPKFDLLGLKTLAAVDEVLTQLMASR-------VNVGLECFGGEKAFKLICGG 578 Query: 604 ETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISY 663 FQLESRGMK IK + P D+ AL+AL+RPGP++ + + D KHG S Sbjct: 579 RVLGTFQLESRGMKKHIKHVLPSSLNDLAALIALYRPGPMKH--IKQYSDTKHG----SA 632 Query: 664 PDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQ 723 V H+++ +L+ TYG+++YQEQVM IAQ L+GY+L AD+LR+AM KK EM Q Sbjct: 633 ARVSL-HQAVDHLLDETYGVVIYQEQVMLIAQKLAGYSLSEADVLRKAMAKKDMREMLVQ 691 Query: 724 RSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFM 783 R F GA NG+ LA +FD + +FA YGFNKSH+ AY+ ++Y T LKA +P EF Sbjct: 692 RQRFVGGAVANGVKRALAASLFDGLARFADYGFNKSHALAYSALAYITAHLKASFPLEFY 751 Query: 784 AAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGE 843 AA M+ ++ K+ L E G+K + P + + F +G I + + AIKG+GE Sbjct: 752 AANMSVEIAEQAKMSSLYYEAVSSGIKFVAPSVQAPFLKFKAG-NGFIHFPLSAIKGIGE 810 Query: 844 GPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLG 903 P+ A I A F +L D C R + +RVL+ LI +GA D G R ALM SL Sbjct: 811 -PVVASIAAARGSQPFADLTDFCVRVSPRAATKRVLKSLIAAGAMDCFGASRRALMASL- 868 Query: 904 DALKAADQHAKAEAIGQADM 923 DA+ + K +D+ Sbjct: 869 DAMARCAKSKKGRVDASSDV 888 >UniRef50_B6W6J1 Putative uncharacterized protein n=1 Tax=Anaerococcus hydrogenalis DSM 7454 RepID=B6W6J1_9FIRM Length = 754 Score = 491 bits (1265), Expect = e-137, Method: Compositional matrix adjust. Identities = 284/780 (36%), Positives = 446/780 (57%), Gaps = 48/780 (6%) Query: 399 MPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDR 458 MPD D+DFC E RD+V+++V D+YG+D VSQI+TFG M A+ IRDVGRV+ + VD+ Sbjct: 1 MPDIDIDFCYENRDRVVDYVYDLYGKDHVSQIVTFGRMKARNAIRDVGRVMDISFKKVDK 60 Query: 459 ISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIA 518 I+KLIP GMT+ KA E +L YE D E K +ID AR +E + R+ HA GVVI+ Sbjct: 61 IAKLIPQAIGMTIDKALENTEKLAYEYENDVETKRMIDTARNIENLPRHTSIHAAGVVIS 120 Query: 519 PTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAK 578 +TD PL + VTQF+ +++E GL+K DFLGLR LT+I ++ + ++ K Sbjct: 121 KEILTDIVPLALSND--QIVTQFNMTEIEELGLLKMDFLGLRNLTVIQDTIKDV--KKYK 176 Query: 579 NGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALF 638 N + LD I +D K + +++ET +FQ ES GM++ +K L+P F+D++A +LF Sbjct: 177 NIDINLD--NIDENDPKVLEQFRKAETIGIFQFESAGMRNFLKNLKPTRFDDLVAANSLF 234 Query: 639 RPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLS 698 RPGP+ + N+I K + +SY D SLKP+LE TYGII+YQEQVMQI Q L+ Sbjct: 235 RPGPMDQ--IPNYIKNKMHPQNVSYID-----PSLKPILEVTYGIIVYQEQVMQIVQQLA 287 Query: 699 GYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAE------------KNGINAELAMKIFD 746 G++LG AD LRRAM KKK M R +F G + NGI+ + A KI+D Sbjct: 288 GFSLGEADNLRRAMSKKKMSVMEANREIFVHGKKDAKGNYEVLGCVNNGISEKNANKIYD 347 Query: 747 LVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWR 806 + FA Y FNKSHSAAY+LV+ QT +LK ++ E+MA ++T+ M ++ KV + E R Sbjct: 348 EMISFAKYAFNKSHSAAYSLVAIQTAYLKCYFKEEYMANLLTSIMGDSSKVYLYISEAKR 407 Query: 807 MGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGY--FRELFD 864 +G++I+PPDIN F + + +I++G+ AIK VG+ I+ I++ R++ Y F++ + Sbjct: 408 LGIEIVPPDINKSERRF-IAEKNKIIFGMSAIKNVGDNLIDLIVKIRDEKKYKTFKDFLE 466 Query: 865 LCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF 924 D LN++ LE LI SGAFD LG R+ L+ AL++ + K GQ ++ Sbjct: 467 RIEANDPTALNKKALESLIKSGAFDSLGYKRSELIAVHETALQSIHDNEKVNLKGQMNLL 526 Query: 925 GV-LAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVR-- 981 ++ EQ + + + + L E+E LG Y++ HP+N +++Y Sbjct: 527 DFDQKDQNEQDDIKFPPVNEYKNKQKLSLEKEVLGFYISDHPLNSLSDRVKKYTNFSTEI 586 Query: 982 LKDMHPTE----RGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDK 1037 L ++ P + K + AG++ +TK+ + TL+D G +E+++F + Sbjct: 587 LSELRPIDLDKYDNKEVVMAGVITNKSETMTKKNTLMAFSTLEDMYGSIEMIIFPNIYKD 646 Query: 1038 YQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQL 1097 ++ ++E D +++V G + D LK+ + +IDE K L I ++D Sbjct: 647 FRNVVENDTLVMVKGNLQSSD--DELKLIVSNIKEIDENSFK---NLYI-----KMDYIR 696 Query: 1098 LNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSEQVEL 1157 N++R+ L + GT PV +Y+ D + ++ + + + ++N L+ IG + V+L Sbjct: 697 YNKIRKDLLDNH-GTTPVIIYF--TDKKKTVKLDESLWIDQNSDIINYLKLKIGKDNVKL 753 >UniRef50_D1AVZ7 DNA polymerase III, alpha subunit n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AVZ7_STRM9 Length = 1056 Score = 488 bits (1255), Expect = e-136, Method: Compositional matrix adjust. Identities = 318/1040 (30%), Positives = 545/1040 (52%), Gaps = 83/1040 (7%) Query: 10 RVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGAD 69 R+H++YS+++G+ V+KA + LAITDF + +KFY + I PI+G + Sbjct: 4 RIHTEYSLLEGVGSVEEYVQKARENNIKELAITDF-GMFAAIKFYNSCKSNNIVPIIGIE 62 Query: 70 FNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEGLI 129 +++ L + + LT+LA N G +N+ L + +++R + I D L+E + + Sbjct: 63 IHLKGFLDQENIYTLTLLAKNEKGVKNIYKLSTISHERNF------ILLDDLLEHGKDIY 116 Query: 130 LLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELA 189 +LSGG ++ +L+ + V + + E LE+ + + + +L Sbjct: 117 ILSGGVNSELVSYVLKNDYKKVKKLMEIMLEKLD--IILEIPMFEMLEYQRLMFD--KLV 172 Query: 190 EARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCE- 248 + + + N++ +++ D +I AI + TL + + ++ + ++ E Sbjct: 173 DELNVKSIEVNEIYYLEKEDKILQKIFAAIKENRTLKTVQNEKKQDGLHFIINNQDKRED 232 Query: 249 LFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKEGLEERLAFLF 308 + DI L N NV E+ L + P G +S ++Y++ LE+ + + Sbjct: 233 ILNDIDIVLDNK-------NV-----EFPLVKLPDG-LSEKEYIIN----ILEKNIGKKY 275 Query: 309 PDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGS 368 P+ + ++ R Y EL VI++MG+ YFLIV +FI+++K+N + +GPGRGS AGS Sbjct: 276 PNITKEIQDRINY------ELNVIDKMGYIKYFLIVHDFIKYAKENDIFIGPGRGSAAGS 329 Query: 369 LVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVS 428 +++Y L IT+LDP+++ L+FERFLNPER+SMPD DVD EKR +IE++ YG VS Sbjct: 330 IISYLLGITELDPIKYGLIFERFLNPERISMPDIDVDIEQEKRIDLIEYIKRTYGSRNVS 389 Query: 429 QIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEAD 488 QIITF T ++D+ RV P I KL+ E L E+ ++ Sbjct: 390 QIITFSTFKPTLALKDLARVFEIPEK---SIRKLLDESK----------EKSLDELSDSK 436 Query: 489 EEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEY 548 E VK+LID A+++EG +N+ HA GV+I + + PL D K QF+ + +E Sbjct: 437 EMVKSLIDYAKRIEGKIKNSSTHAAGVIITKEDMRENLPLIYDSYTKDYQIQFEANVLES 496 Query: 549 AGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAV 608 G +K D LGL+ L ++ ++ +N+ +DI +P + +++F++L T + Sbjct: 497 LGYLKMDLLGLKNLNVVKNVIKKVNE--------DIDIYNLP-EYEEAFNLLNTGNTIGI 547 Query: 609 FQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQW 668 FQ ESRG+ L L+ ED+ L+AL+RPGPL+SG++ + I K+ + ++ Sbjct: 548 FQCESRGITQLAMNLKIHSLEDIALLLALYRPGPLESGLIPSLIVMKNNKN----IKIKT 603 Query: 669 QHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFA 728 ++ +L PTYG+++YQEQVM+IAQ +SGY+L AD LR+A+GKK E + + R F Sbjct: 604 VDPMIEDILLPTYGVLVYQEQVMEIAQKISGYSLAKADELRKAIGKKNVELLKQNRKDFI 663 Query: 729 EGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMT 788 E A I + A KI+DL++ F YGFNK+H+ +YA ++YQT +LKA YP EF A+++T Sbjct: 664 ENA---IIPKQRAEKIYDLIDNFGNYGFNKAHAISYANITYQTAYLKAKYPREFFASLLT 720 Query: 789 ADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEA 848 ++ +K+V E + +++ PP IN F + ++G I + A+K + E Sbjct: 721 TELKVEKKLVNSYAEMLKRNIEMYPPSINRSTAEFEIEENG-IRIPLSALKEMSEKTARE 779 Query: 849 IIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKA 908 ++E R K G F+++FD R + LN+ LE LI SG FD R L+ +L D +K Sbjct: 780 VVEEREKNGNFKDIFDFITR--CRFLNKSNLEGLIYSGCFDEFNIGRKKLIVNLQDIIKW 837 Query: 909 ADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQ 968 D+ K++ + +F + E E E + + ++ E+E + L + Q Sbjct: 838 IDKRNKSQTDIYSSLFLNMNMEIE--EYKWMETDEMSDDEIIKLEKEYVKLSMRN---TQ 892 Query: 969 YLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEV 1028 LK V + + + G + + + VTK+ + I + G E Sbjct: 893 ILK--SELVYNIFKSNEY---------VIGYIESEKSKVTKKNELMNIVNILSIEGSKEY 941 Query: 1029 MLFTDALDKYQQLLEKDRIL 1048 ++F ++ ++++K I+ Sbjct: 942 LIFPKEYMRFSKVIQKGNII 961 >UniRef50_D1C6C8 DNA polymerase III, alpha subunit n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C6C8_SPHTD Length = 1095 Score = 482 bits (1241), Expect = e-134, Method: Compositional matrix adjust. Identities = 344/1092 (31%), Positives = 551/1092 (50%), Gaps = 58/1092 (5%) Query: 3 EPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGI 62 E R+V L +H+ YS +DG + ++ +A+ LG ALAITD L G ++F A I Sbjct: 4 EHRYVELHLHTAYSFLDGASLPEEIIARASELGYRALAITDHDGLHGAMEFAQLARAADI 63 Query: 63 KPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLI 122 +PI GA+ + + +HLT+LA + TGY NL LI+ A+ G P +D D L Sbjct: 64 QPITGAELTLA------DGSHLTLLAESVTGYGNLCRLITAAHHAGEDRV-PRLDPDLLP 116 Query: 123 ELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRTGRPDEESY 181 EGLILL+G R G + R + G+ A + + Y E F + +EL + + Sbjct: 117 RHAEGLILLTGCRQGALARLVDAGDLAGAEGLLRRYVEWFGAENVVVELQQNLVYGDTRR 176 Query: 182 LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241 + VELAE GL AT +V + ++ VAI + TLD R R + + Y+R Sbjct: 177 VRLLVELAERLGLRYAATGNVHYHRPERHRLQDVLVAIRERTTLDGAHRARRANAEFYLR 236 Query: 242 SEEEMCELFADIPEALANTVEIAKRC---NVTVRLGEYFLPQFPTGDMSTEDYLVKR-AK 297 + EE+ LF P AL T+EIA+RC ++T L Y P +PT T D L+ R + Sbjct: 237 AAEEVAVLFDRYPAALEATLEIAERCAGFDLTRDLA-YRFPDYPTAPGETPDDLLARICR 295 Query: 298 EGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKD---- 353 E L ER +P+ E R + RL EL++I + G+FL+ + + +++ Sbjct: 296 EALAER----YPEPERRAA----AEARLAEELRLIARHRLAGFFLLYRDLLLLAQEVAAE 347 Query: 354 ----------NGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 +P G GRGS S+V Y + ++ +DPL L RFLN + S+PD D Sbjct: 348 VRGTDTPRAGGNLPPGRGRGSSVSSIVCYLIGLSHVDPLAHGLFLGRFLNEDLRSVPDID 407 Query: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 +DF + R+++IE V ++YG + + + F T ++ +RD+G+ LG P +D+I+KL Sbjct: 408 LDFPRDIRERLIERVYEVYGPEHAALVCAFSTYKLRSAVRDIGKALGLPQPDIDKIAKLS 467 Query: 464 PPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKIT 523 L + P+ +A ++ L+++A +L G R+ +H GG++++ + + Sbjct: 468 EARSAKDLGEELARIPEFAARRDA-PPLRYLVELAEELAGFPRHVTQHVGGMIVSSSPLV 526 Query: 524 DFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPP 583 + P+ + Q+DK + A +K DFL L L+++ LE+I ++G+PP Sbjct: 527 ELVPIQPAAMPGRYLCQWDKDSCDDARFIKIDFLALGMLSLVEECLELI----VRSGKPP 582 Query: 584 LDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPL 643 +D++ I D +DM+ +T VFQ+ESR ++ R QP ED+I VA+ RPGP+ Sbjct: 583 VDLSRIDFADPAVYDMICAGDTIGVFQIESRAQIQMLPRTQPRSLEDLIVQVAIVRPGPI 642 Query: 644 QSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLG 703 V+ ++ + R +++ H SL+PVLE T G+ILYQEQV+++A VL+G+T G Sbjct: 643 VGKAVNPYVQNRQRRMRNPRAPIRYDHPSLEPVLEETLGVILYQEQVLEVAMVLAGFTAG 702 Query: 704 GADMLRRAMGKKKPEE-MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSA 762 A+ LRRAM +K+ E M F +GA G+ E+A ++F + FA YGF KSHSA Sbjct: 703 QAEALRRAMSRKRSREAMLHFWRQFRDGALARGVRLEVAKEVFRKLLGFAEYGFPKSHSA 762 Query: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 A+A+++YQ+ WL+ +YP EF A+ +V++ R G++ILPPD+N Sbjct: 763 AFAVLAYQSAWLRCYYPTEFTCALFNNQPMGFYPPHVIVNDAKRHGVRILPPDVNQSGAR 822 Query: 823 FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKL 882 V + + G G ++G+GE I R G +R L D R L R +E L Sbjct: 823 CTVEGNA-VRIGFGYVQGIGEDAALLIEREREANGPYRSLADFVRRV---PLAREAVENL 878 Query: 883 IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942 I+ GAFD G R + LG + A G+ G +EQ + Sbjct: 879 IVVGAFDGFGLGRREALWQLGLFI-------PARGFGKNGAAGKQLPLALPVEQDMVELR 931 Query: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVA 1002 P + + +TLGL HP+ + + V D+ G + AGLVV Sbjct: 932 PMSAWEQMAADYDTLGLSPRYHPLGLLRPHLPEAI--VSTVDLAEIPDGTEVRVAGLVVC 989 Query: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGG 1062 + T +G I L+D G + V+++ ++ + L+ + L+V G++ D G Sbjct: 990 RQRPGTAKG--ITFLLLEDERGLVNVIIYPALYEEQRLLVRGEPFLVVEGRLQRRD--GT 1045 Query: 1063 LKMTAREVMDID 1074 + + A + +D Sbjct: 1046 INLVAHRLHTLD 1057 >UniRef50_Q3ADH8 DNA polymerase III, alpha subunit n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ADH8_CARHZ Length = 964 Score = 466 bits (1199), Expect = e-129, Method: Compositional matrix adjust. Identities = 315/903 (34%), Positives = 490/903 (54%), Gaps = 77/903 (8%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 +V L + + YS ++ K L++K A LG+ A+ I D TNL G K + A +K + Sbjct: 4 YVPLNIKTGYSFLESSIKLDGLMEKTARLGLKAVGIAD-TNLFGAAKAFFAAKNFNLKLL 62 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 +G + + E L + A +N GY+ L+ A Q+ +G ++ ++E Sbjct: 63 LGLE-------VKSEAGPLWLYARDNEGYK---FLVRAATQKYFGKE--VLSLAEILE-A 109 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 185 GLI+L G G + + F E D Y L + + E+ + A Sbjct: 110 RGLIILGGAEFLAAG----------LKNVLNFKEAFGDDFYLLAKVDDLLTNPEN-IRAL 158 Query: 186 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 245 + +A+ L + + + RF++ + + + + A+ + TLD K+ SP Y S E Sbjct: 159 LAIAKKYRLKIAGSPNPRFLEKNHYFFYRLLCAMKNNVTLDQIKK--RTSPYAYYLSPNE 216 Query: 246 MCELFADIPEALANTVEIAKRCNVTVRLGEYF------LPQFPTGDMSTEDYLVKRAKEG 299 M ++FA I +L T+EIA++ +G++F LP+F T ++YL K EG Sbjct: 217 MAKIFAPINHSLKTTLEIAEK------VGDFFPGDDLKLPEF-TCPGEKDEYLRKLCLEG 269 Query: 300 LEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVG 359 R R+ R E ERL EL++I ++G GYFLIV + +++S+ + +G Sbjct: 270 AYARYG--------RISR--EVKERLNYELEIIKRLGLAGYFLIVHDLVRFSRSQDLALG 319 Query: 360 PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVA 419 PGRGS AGSLV Y L +T++DPL+ LLFERFLNP R +PD D+DF R++VI ++ Sbjct: 320 PGRGSAAGSLVLYLLGVTEVDPLKHGLLFERFLNPGRKVLPDVDLDFGHLDREKVIRYLF 379 Query: 420 DMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEP 479 YG D V+ I T T AA+ +R+V + LG+P +++I+ L+P G ++ KA A P Sbjct: 380 QKYGDDGVAHIGTVITFAARGAVREVAKALGYPEPLLNKITPLLPAFGGSSIEKAVRALP 439 Query: 480 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 539 ++ + E D ++ L+ +AR EG R+ HA G+V+A + + PL G+ +T Sbjct: 440 EVRKALE-DPVMRKLLTLARFFEGHPRHFSVHASGLVVARREDLEQIPLASSFRGEK-IT 497 Query: 540 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 599 QFDK DVE G +K D LGLR LT+++ RR+ A+IPL+D +++ Sbjct: 498 QFDKDDVERLGFLKVDLLGLRLLTVVH------RSRRS---------ASIPLNDGETWKR 542 Query: 600 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 659 +Q+++T FQLES GM+ + ++ P E++ ++ALFRPGPL+SG VDN++ KH + Sbjct: 543 IQKAQTIGCFQLESDGMRYYLGKVAPRNIEELAQVLALFRPGPLESGQVDNYLLAKHQKA 602 Query: 660 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 719 YP H +LKPVLE ++G++LYQEQV++IA +++G+ L +D LRRAM K + Sbjct: 603 PPVYP-----HPALKPVLEESHGLVLYQEQVLKIAALVAGFDLAKSDDLRRAMSKHDRKI 657 Query: 720 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 779 MA+ + F GA KNG +A A KIF L++ FAGYGFNK+H +YA ++Y + +L H+P Sbjct: 658 MAELKEEFMMGAVKNGYSAADAEKIFSLLQNFAGYGFNKAHGVSYAYLAYYSTFLITHWP 717 Query: 780 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 839 + ++ +D L E R G+KIL PDIN Y F DG I G I+ Sbjct: 718 KTYFTLLLNSDGGFYPPSFYL-REAGRRGIKILLPDINESQYGFTEVKDG-IRIGFKDIE 775 Query: 840 GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 899 GVG I+E R + + +D R KL+ + LI++GAFD G R +L+ Sbjct: 776 GVGPKAASIILEGRTRP--YTSFWDFWQRAG-HKLSVETIRNLILAGAFDGFGVSRESLL 832 Query: 900 NSL 902 L Sbjct: 833 YCL 835 >UniRef50_Q14LT7 Probable dna polymerase III alpha chain transmembrane protein n=1 Tax=Spiroplasma citri RepID=Q14LT7_SPICI Length = 1014 Score = 464 bits (1195), Expect = e-129, Method: Compositional matrix adjust. Identities = 327/1054 (31%), Positives = 527/1054 (50%), Gaps = 105/1054 (9%) Query: 8 HLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVG 67 HL V + YS++ L A G+ +LAI D N+ G+ +F+ IKPI+G Sbjct: 5 HLNVRTSYSLLSSLITFDKYFTYAMTTGLLSLAICD-NNMFGVYEFHQLCQKNKIKPIIG 63 Query: 68 ADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEG 127 + + D ++ + A N GY NL + S Sbjct: 64 LNVII---WFNDIPYNMNLFARNQKGYFNLVEISS------------------------- 95 Query: 128 LILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRP----DEESYL- 182 L++++ +V L S + V + D Y EL +T + + + YL Sbjct: 96 LVMINTENKKNVT---LDEISKFLTTDVKIIINYTTDDYQPELYQTLKSLLKVETDLYLG 152 Query: 183 --HAAVELAEARGL-----PVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNY- 234 + + L E+ ++ N V++ S DF A+++ I + K Y Sbjct: 153 INNGNLSLLESLQTLLASEQIIWNNKVQYFTSEDFIAYKVVDTIKTQTLFKESKMKDLYG 212 Query: 235 --SPQQYMRSEEEMCELFADIPEALA--NTVEIAKRCNVTVRLGEYF--LPQFPTGDMST 288 SP Y + + F +I + N + K G F L ++PT + T Sbjct: 213 WVSPPSYYQ------QYFDNIKTFITGINVFPLHK--------GTIFDNLLRYPTPEGQT 258 Query: 289 -EDYLVKRAKEGLEERLAFLFPDEEERLKR-RPEYDERLETELQVINQMGFPGYFLIVME 346 + +L + + L+++ R+ + Y ERL EL VIN+MGF YFLIV + Sbjct: 259 AQQFLQEICQTALKQK----------RISSSKTTYLERLNYELTVINKMGFNDYFLIVWD 308 Query: 347 FIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 406 +++++K + VGPGRGS AGSLV+Y L IT +DP+ ++LLFERFLNPER S+PD D+DF Sbjct: 309 YVRYAKQQNIFVGPGRGSAAGSLVSYLLDITTIDPITYNLLFERFLNPERKSLPDIDIDF 368 Query: 407 CMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPD 466 +KR+ V+E++ + YG + V+ IITF T+ K IRD+ R+ D++SK +P + Sbjct: 369 EDDKREMVVEYLFEKYGSEHVAHIITFQTIGMKMAIRDICRIFDIAIEEADKMSKAVPLE 428 Query: 467 PGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 +A + P L EIY+ ++ + +K+ G+ R G HA GVV+ ++ Sbjct: 429 YNYHYEEAINSNP-LFEIYQ--KKYPQVFLHLKKIIGLPRQTGTHAAGVVLTQQRLQTII 485 Query: 527 PLYCDEEGKHPV--TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584 P+ +EG + + TQ+ + +E G++K D LGLR LTI++ ++ I + + L Sbjct: 486 PV---KEGYNGIYQTQYSMNYLEELGILKMDLLGLRNLTILHDVIDNI----YQETKVKL 538 Query: 585 DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644 D+ +PL+D+K++ +L + +T +FQLES GM ++ + PD ED++A +L+RPGP Sbjct: 539 DVNTLPLNDRKTYQLLAQGDTKGIFQLESPGMTKVLVDMAPDQLEDIVATSSLYRPGPQD 598 Query: 645 SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704 + + FI RK +++Y D E L +L PTYGII+YQEQVM IAQ ++ ++L Sbjct: 599 N--IPLFIKRKKKLAKVTYID-----ERLAEILAPTYGIIVYQEQVMLIAQKVANFSLAK 651 Query: 705 ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764 AD+LRRAMGKK M++ ++ F E A KN ++A +I++L+ KFA YGFN+SH+ AY Sbjct: 652 ADVLRRAMGKKDASIMSQMKTEFIEEAVKNHYVEKIAQEIWELIYKFAAYGFNRSHAVAY 711 Query: 765 ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824 +L+ YQ +LKA+Y ++F+A+++T + + K + + L I+PP+IN+ +H Sbjct: 712 SLLGYQMAYLKANYSSQFLASLLTHVIGDEHKTNDYIALAKKNHLTIVPPNINAPYRQYH 771 Query: 825 VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884 D+ +I + IK +G I + G +L+DL R K LNR+ E L Sbjct: 772 TIDN-QICVPLLIIKQIGFAFFNKIAQEYQTNGMLTDLYDLFIRLYKKGLNRKTYEALCF 830 Query: 885 SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944 SGA D +R L N+ L + E + LAE+PE + +P Sbjct: 831 SGALDVFKMNRITLFNNYQRILTYIELIKTQEENENLVVDFSLAEKPELV------IEPN 884 Query: 945 PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004 E + L+ E E LG YL+ HP+ +Y++E Y L G LV + Sbjct: 885 DEVICLEKEYEFLGFYLSNHPL-KYIREKAGYQDKTTLISNLRLSLGST-NVLILVKRLK 942 Query: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKY 1038 ++ K N++ D SG + + F Y Sbjct: 943 IITDKNNNKMAFLDCYDESGEISITAFAGIYKDY 976 >UniRef50_C5NW81 DNA polymerase III subunit alpha n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NW81_9BACL Length = 1089 Score = 454 bits (1169), Expect = e-126, Method: Compositional matrix adjust. Identities = 321/1047 (30%), Positives = 522/1047 (49%), Gaps = 98/1047 (9%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 + +++VHS Y +++ K L K A ++ I D N+ G +K Y A GI I Sbjct: 2 YYNMQVHSAYDLLNSTIKYESLFSKLAKDNQKSVVIVD-PNMYGAIKAYKASKKVGINLI 60 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 G + N+ G L +L + L L IS + G D +I+ Sbjct: 61 QGLEVNLGY---GIGLLKFNLLCKTEKMFYKL-LEISTKFMNGEEWTVEDFAND-MIDYR 115 Query: 126 EGLILLSGGRMGD-VGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHA 184 E +L + D + S L+ + D F E Y D Y Sbjct: 116 EDFVLTVVDELRDSMEFSYLKNLLSKYDFYFGFNESFQVGLY-------SDYDNIVYTKP 168 Query: 185 AVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEE 244 + L + V+ + +R D ++ + + DD R + + +E Sbjct: 169 SFYLNKEHYQQVIVSRAIR-------DNKKLNIQGLTTISGDDFVREKKDFEEILALGDE 221 Query: 245 EMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGD-------MSTEDYLVKRAK 297 E L+A ++ AN I C + Y LP++ G+ +S+++YL + Sbjct: 222 E---LYAIFEKSFANQKLIIDSCEYELNFSGYHLPKYIYGEKEEIFEKLSSKEYLHYLVQ 278 Query: 298 EGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVP 357 +G++E+L K +Y +R EL++I++MGF YFLIV +F++++KDNG+ Sbjct: 279 KGVKEKLIG---------KDLYQYQKRYSYELKIIDEMGFNDYFLIVYDFVKYAKDNGIL 329 Query: 358 VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEH 417 VG GRGS AGSLV Y L IT+ DPLE++LLFERFLN ER+SMPD D+DF +RD+VI++ Sbjct: 330 VGAGRGSAAGSLVCYLLDITEADPLEYNLLFERFLNKERISMPDIDIDFQDTRRDEVIKY 389 Query: 418 VADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEA 477 V + YG D V+QIITF T +K+ R+ R+L F ++ K I + T Sbjct: 390 VEEKYGSDKVAQIITFTTFQSKSAARESARIL----QFDEQTLKFISSNISST------- 438 Query: 478 EPQLPEIYEADEEVKALID----------MARKLEGVTRNAGKHAGGVVIAPTK-ITDFA 526 L E YE EE++ I+ +A LE + +N HA G+VI+ K + ++ Sbjct: 439 -RTLKECYEISEELRTFINTSNINKRWFSIALSLEHLPKNPSVHAAGIVISDDKPLVNYT 497 Query: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586 PL K+ +TQ+ DVE GL+K DFLG+R LT+++ +E I K P DI Sbjct: 498 PLAESNMTKY-LTQWTMDDVESVGLLKIDFLGIRYLTMVSSIVEEIRKEN-----PAFDI 551 Query: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 I D K +++ + +T +FQ ES GMK+ + L+P F D++A+ AL+RPGP+ Sbjct: 552 TKINYQDPKVYELFAKGKTEGIFQFESSGMKEKLNLLKPTEFNDIVAMNALYRPGPM--A 609 Query: 647 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 ++ ++ RK+ E++ YP H L+ +L+ TYG+I+YQEQ+M IA + +L AD Sbjct: 610 QIEVYVRRKNKEEQVIYP-----HPHLEKILKDTYGVIVYQEQIMLIAVNFAHMSLNEAD 664 Query: 707 MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 +RRA+ KKK E++ +F E + G + ++A K+FDL+ FA YGFNKSH+ Y++ Sbjct: 665 NMRRAVSKKKKEDLEYYGRIFVEKSVAAGYDIKVAEKLFDLIVTFANYGFNKSHAVVYSM 724 Query: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 ++Y+ +LK +Y FM A++ + + +K+ E +G+ ++ PD+N L +F V Sbjct: 725 LAYRLAYLKVYYTKHFMTALLNNVISSEKKINEYKQELMNLGINLVKPDVNRSLANFRVF 784 Query: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 + +IV+ + AIK VG I++ R G + ++ D R + KK++ + L+ +G Sbjct: 785 KN-DIVFALTAIKNVGYRSGYEIVQDRINFGPYLDIDDFLKRMN-KKVDYQAAVSLVKAG 842 Query: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPE 946 A D G +RA LM + D Q + + G L + E+IE Y+ + Sbjct: 843 ALDTFGYNRATLMKKVNDYYSDNRQFINNVRVALSAESG-LTLKVEEIE-DYSITEK--- 897 Query: 947 QVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTER--GKVITAAGLVVAAR 1004 + E+E G Y HP+ Q KE Y+ P + G+V + ++ + Sbjct: 898 ---IQMEKEVTGTYFLKHPV-QVEKEKYSYL---------PLQYIGGEVSDSYVEIITRK 944 Query: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031 + TK G+ + T++D +V +F Sbjct: 945 EIRTKNGDYMAFLTVNDGKNDYDVTVF 971 >UniRef50_Q04B00 DNA polymerase III catalytic subunit, DnaE type n=2 Tax=Lactobacillus delbrueckii subsp. bulgaricus RepID=Q04B00_LACDB Length = 1159 Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust. Identities = 332/1050 (31%), Positives = 515/1050 (49%), Gaps = 76/1050 (7%) Query: 23 KTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVQCDLLGDELT 82 KTA LV+ A G A+A+TD GL FY AGIKP++G + L + Sbjct: 15 KTADLVQGAKERGYSAVALTDINVTFGLADFYQEAVKAGIKPLLGLQGRFKGIELEEAEY 74 Query: 83 HLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGR- 141 L LA + GY++L L S AGP L EL++ +++ G ++ + Sbjct: 75 DLVFLAQSQKGYKSLMRLSSFLNIASGDLAGPAPSLADLPELSDLTVIVPAGLTSELRQL 134 Query: 142 -SLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAV--ELAEARGLPVVA 198 L V + AF + P L P E + + A +LAE LP+ Sbjct: 135 NKLRNSGEEYVKKLQAFLPKGLP------LYLGVYPAESAAAYDAYVKKLAEISSLPITV 188 Query: 199 TNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQ--QYMRSE---EEMCELFADI 253 DVR++D D ++ AI + LD+ + Q ++R E+ C + Sbjct: 189 VEDVRYLDPGDQFLCKVLQAIKERRVLDEHELTLMAEGQGSHWLRPAPVLEDACREMG-L 247 Query: 254 PEALANTVEIAKRCNVTVRLGEYFLPQFPTGD-MSTEDYLVKRAKEGLEERLAFLFPDEE 312 EALAN+ +IA C + E LP FP +S++ YL K A GLE +L Sbjct: 248 EEALANSGKIAASCQAKIPFEEPQLPVFPQATGLSSDQYLEKLAFAGLE-KLGL------ 300 Query: 313 ERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAY 372 R+ Y RL+ EL VI QMGF YFLIV + + + + G VGPGRGS AGSLVAY Sbjct: 301 ----RQGIYHARLQKELAVIQQMGFADYFLIVGDIVNYCRQKGALVGPGRGSAAGSLVAY 356 Query: 373 ALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMY--------GR 424 AL IT +DPL++DLLFERFLNP R MPD D+DF R +V + Y G Sbjct: 357 ALGITQIDPLKYDLLFERFLNPARADMPDIDLDFTTSGRKLAFAYVQEKYGAKARFGEGS 416 Query: 425 DAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEI 484 D V++I+ TM AK+V+ G+V G + R+ + + TLA+A + + + + Sbjct: 417 DLVARILALTTMKAKSVLERTGQVFGLTLPAIARLKQAM--GAAKTLAEAGQ-QAEFKAL 473 Query: 485 YEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKS 544 A + L A +LEG+ + G HA G+VI+ ++ L +E + K Sbjct: 474 VAASPLTRLLYQTAARLEGLPEDTGTHAPGLVISEEPLSRQIGLMTGKEAPLWTVEQTKK 533 Query: 545 DVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSE 604 VE GL+K DFL L L ++ L I K PLD+ +PLDD + + R E Sbjct: 534 YVEKYGLLKIDFLTLDNLELLEGVLAEIQKSSG-----PLDLTRLPLDDPDTLRLFARGE 588 Query: 605 TTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYP 664 T +FQ S GM+++++++QP F+D+ VAL+RPGP+ S + ++ RK+G + YP Sbjct: 589 TQQIFQFNSSGMQEVLRKIQPRTFDDLSVAVALYRPGPIAS--IPLYVARKNGTSPVQYP 646 Query: 665 DVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQR 724 D SLK VL PTYGI +YQEQVMQ A++ +G++L AD+ R A+ KK+ +A+++ Sbjct: 647 D-----PSLKEVLGPTYGIFVYQEQVMQTARIFAGFSLAEADIFRNAISKKQAGLLAEEK 701 Query: 725 SVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMA 784 F GA + G + + A ++ L+E FA YGFN SH+ AYAL++Y +L H+P EF Sbjct: 702 DKFVAGAVRKGHSRQAAEAVYALIEPFANYGFNHSHAVAYALLAYWQAFLSVHFPREFYL 761 Query: 785 AVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEG 844 + A + + + + + G++IL PDIN + +G I G+ I G+ Sbjct: 762 EKLRASRGKEKGAI--IRQARKAGVEILGPDINLSRAEARLF-EGRIYLGLKDIMGITPA 818 Query: 845 PIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGD 904 ++ ++ + F + DTK+L + L LI +G FD++ P+RA+L+ + G+ Sbjct: 819 FLDQLLALKRPVTSFTAFLR---QLDTKELKEKQLVPLIEAGLFDQVSPNRASLLVNCGN 875 Query: 905 ALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGH 964 L A K+ + LA + E + A+ E+V + E +G +T Sbjct: 876 MLNTARLSQKSLVLQD-----FLAAKEENVPMPTAA-----EKVAM--EERAMGFAVTAS 923 Query: 965 PINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIG----ICTLD 1020 P+ K + + G + E G+V+ + KRG + G Sbjct: 924 PLEIAGKALAKRYGAKPFAGLALNETGQVLAQ---FIKKNDWRVKRGAQAGELGSNAVFS 980 Query: 1021 DRSGRLEVMLFTDALDKYQQLLEKDRILIV 1050 D +V +FT ++ Q+L+++ + ++ Sbjct: 981 DGQTSEKVTIFTSQYRRFAQILKENAVYLL 1010 >UniRef50_A9NET2 DNA polymerase III alpha subunit n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NET2_ACHLI Length = 982 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 323/1049 (30%), Positives = 528/1049 (50%), Gaps = 106/1049 (10%) Query: 9 LRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA 68 L S YS++ + K A + +AITD NL GL K I I+G Sbjct: 8 LYTQSSYSILKSTLHLETIFKHAKQENLDFVAITDDNNLHGLYKALVLSKKYQIPLILG- 66 Query: 69 DFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEGL 128 F +LG +L L + A N+ ++L L S A P I + ++L L Sbjct: 67 -FQKTFKVLGYDLD-LLIYAQNDEALKSLIELNS------LTARTPDIPFESCVQLLNKL 118 Query: 129 ILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVEL 188 I++ + + S + E ++ + + ++L L + + ++ Sbjct: 119 IIVLPSTQSFIYQHY--EMSERIYEVISSLHKSLKN-FYLGLGNATDFEVDKITPILKKI 175 Query: 189 AEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCE 248 A L + T + D + ++I I D + ++ + ++ S+ E+ + Sbjct: 176 ALNEDLKYLPTYQQSYEDEENKTTYDIVNTIKDS-------QFKSLNVSMHLLSKNELVK 228 Query: 249 LFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGD-MSTEDYLVKRAKEGLEERLAFL 307 + N + R N T LP FPT D + + YL A +GLE+RL Sbjct: 229 KYEQEKNIFKNVDAVFGRVNYTYLDNTQSLPVFPTKDNVESHIYLYALAHKGLEKRL--- 285 Query: 308 FPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAG 367 E +++ +Y +RL EL+VI+QMG+ YFLIV +F++++K N + VGPGRGS AG Sbjct: 286 ---ENSGVRKSTDYIQRLNEELEVIHQMGYDDYFLIVYDFVRFAKTNDILVGPGRGSAAG 342 Query: 368 SLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAV 427 SLVAY L IT++DP+++DLLFERFLN +R SMPD D+DF KRD VI++V + YG + V Sbjct: 343 SLVAYCLGITEVDPIQYDLLFERFLNIDRKSMPDIDLDFPDVKRDLVIDYVKEKYGLNHV 402 Query: 428 SQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEA 487 + TF + K +RD+ R + +RI+ +I L E+ Sbjct: 403 VTMTTFTNLTTKTSMRDIARQMNLSQ---ERINAIIASHTKGILD-------------ES 446 Query: 488 DEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVE 547 D E + L+ +A +EG+ R G H G++++ +T PL + + +Q + SD+E Sbjct: 447 DREAQKLVKVASTIEGIPRQTGTHPAGIILSKQDLTTLVPLMNGPKDIYQ-SQLEASDLE 505 Query: 548 YAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTA 607 G +K DFLGL+ LT+I L++ + L ++ +PLDDKK+F++L ++ Sbjct: 506 SLGFLKIDFLGLKNLTMIEDILKL--------EQNKLKLSDMPLDDKKTFELLSNADVEG 557 Query: 608 VFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQ 667 VFQLES+GM+++I++L+P FED++AL+ALFRPGP+Q +D++I R+HG D Sbjct: 558 VFQLESQGMRNVIRKLRPSHFEDIVALLALFRPGPMQ--FIDDYIKRRHG-------DTY 608 Query: 668 WQHES-LKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSV 726 + +S + +L+PTYGII+YQEQ+M+I QV +GY L AD++RRA+ KK + + ++++ Sbjct: 609 EKLDSDIDEILKPTYGIIVYQEQIMKIFQVYAGYKLSEADIIRRAISKKNRDMIDREKAR 668 Query: 727 FAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAV 786 F E + + +AE A KI++ +EKFA YGFN+SHS AYA ++Y +LK HY A F++ + Sbjct: 669 FIEKSVRLNRDAETAEKIYNHIEKFADYGFNRSHSVAYAFIAYYMAYLKTHYYASFISVL 728 Query: 787 MTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPI 846 M+ + NT + LV + GL + PP+IN F G I+ + IKG+G Sbjct: 729 MSQNTSNTAYLKELVLDAQNKGLVVYPPNINLSKLDFIPYKSG-ILAPLTMIKGIGLTTA 787 Query: 847 EAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDAL 906 + I+E + Y D K LN + +E LI + A D G + L+ Sbjct: 788 KKIVELQPFDSY-----DHFKEKVFKVLNEKSIEILIHANALDVFGLNHKELL------- 835 Query: 907 KAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASC--QPWPEQVVLDGERETLGLYLTGH 964 DQ+ + Q EQ Y + P + + E E LG L Sbjct: 836 ---DQN----NLNQTGF--------EQFLDDYKKTRLEELPFNTLKEKEIEVLGFNL--- 877 Query: 965 PINQYLKEIERYVGGVRLKDMHPTE----RGKVITAAGLVVAARVMVTKRGNRIGICTLD 1020 +YLK+ +RL + H + + + I G++ + +++ TK+G+ + T Sbjct: 878 ---KYLKD----EVLIRLNETHKLKPLSLKEQSIRTIGMIESVKIITTKKGDEMAFITFS 930 Query: 1021 DRSGRLEVMLFTDALDKYQQLLEKDRILI 1049 + L++ +F + Y++LL + I Sbjct: 931 N-GISLDLTVFPNQYKSYKELLSDTYVYI 958 >UniRef50_B1ZZZ1 DNA polymerase III, alpha subunit n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZZZ1_OPITP Length = 1116 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 336/1134 (29%), Positives = 544/1134 (47%), Gaps = 101/1134 (8%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 +V L S +S + G ++ L +AA LG+PALAI D + + Y A ++ I Sbjct: 10 YVELHASSAFSFLRGASQPEDLAAEAARLGLPALAIADRDGVYAAARLYQAARELQLRAI 69 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLIS------------KAYQRGYGAAG 113 VGA+ + ++ T L +L N TGY NL LIS +A++R + Sbjct: 70 VGAEVTL------EDGTALPLLVTNGTGYANLCRLISTAKLEPREAAVVEAWRREHPLVT 123 Query: 114 PIIDRD------------W--LIELNEGLILLSGGRMGDVGRSLL-RGNSALVDECVAFY 158 P + W L E EGLI L+G G V + RG A Sbjct: 124 PADSHEDPRARKRPCFATWRELAEHAEGLIALTGDEDGPVLSAWRNRGADAAAAVAARLQ 183 Query: 159 EEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVA 218 DR ++EL R + E++ L +LA AR LP++AT VR+ ++ ++ Sbjct: 184 TIFGADRLYVELQRRRQRGEDTALCFLADLAAARQLPLLATGGVRYATRAERPIADVFTC 243 Query: 219 IHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFL 278 + + TLD R + + ++++RS M ELF D PEA+ N++ +A+R + T++ +Y Sbjct: 244 LREHTTLDAAGRLLSPNAERHLRSGRAMAELFQDYPEAVVNSLRLAERLDFTLQNLDYRF 303 Query: 279 PQFPTGDMST-EDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGF 337 P FP G T E L ++ G ER+ L P +L R EL +IN++GF Sbjct: 304 PDFPVGPGETMESVLREQTYAGARERIGELTPKLRAQLDR----------ELAMINKLGF 353 Query: 338 PGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERV 397 PGYFLIV + QW G+ + GRGS A S V YAL IT ++PL + LLFERFL+ RV Sbjct: 354 PGYFLIVWDICQWCHQRGILI-QGRGSAANSAVCYALGITAVNPLRYRLLFERFLSEGRV 412 Query: 398 ------SMPDFDVDF-CMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLG 450 S PD D+D + R+ VI+ + Y + + T ++ R++G+VLG Sbjct: 413 GKDGHPSWPDIDLDLPSGDLRESVIQEIYQRYAPRGAAMVANVITYRGRSAAREIGKVLG 472 Query: 451 HPYGFVDRISKLIPP-DPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAG 509 P +DR S L D TL A + +L + + A++ + R+++G+ R+ G Sbjct: 473 LPGDVLDRFSALYANGDFPHTLDLAQQV--KLSGLPGGHPRLPAMLALYRQMQGLPRHLG 530 Query: 510 KHAGGVVIAPTKITDFAPL-YCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWA 568 +H+GG+V P ++ P+ EG+ V Q+DK D E GLVK DFLGL + ++ A Sbjct: 531 QHSGGMVFCPNRLDRVVPIENASMEGRR-VVQWDKDDCEELGLVKVDFLGLGMMAVLQDA 589 Query: 569 LEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCF 628 + +R GE PL + +P +D ++ ++R++T VFQ+ESR + + RLQP F Sbjct: 590 FALCTQR----GE-PLTLHTVPPEDPETLATIRRADTIGVFQVESRAQQATLPRLQPQNF 644 Query: 629 EDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQE 688 D+ V++ RPGP+ + I R+ G E++ Y D +H +KP+LE T+G+IL+QE Sbjct: 645 YDVAIAVSIVRPGPIAGRVSHPLIKRRAGEEKVVYLDESVEH-LMKPILERTWGVILFQE 703 Query: 689 QVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAE---GAEKNGINAELAMKIF 745 Q+++ A VL+G++ A+ LRRA G + A+ R V + G G + + K+ Sbjct: 704 QMLETAMVLAGFSGAQAEELRRAFGFNR--NTARLRKVVEQLQLGMRARGHSEAVVQKVL 761 Query: 746 DLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECW 805 + FAGYGF +SH+ ++AL++Y + WLK H PAEF A+++ L+ + Sbjct: 762 ESSTTFAGYGFPESHAISFALLAYASTWLKVHRPAEFTASLLNNQPMGFYSPATLIQDAR 821 Query: 806 RMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDL 865 R GLK+ + + V D I G+ +KG+ E + A++ A+ F + D Sbjct: 822 RHGLKVKAGCVQRSSWECTVEADDTIRIGLRYVKGLREANVRAML-AQRAARAFTSIDDW 880 Query: 866 CARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAAD---QHAKAEAIG--- 919 ART RR L + GA L HR A + + A A + Q A E+ G Sbjct: 881 LARTSFSAAERRALAAV---GALRTLASHRRAALWQVEAAWSAEETLLQQAGQESSGTGV 937 Query: 920 -----------QADMFGVLAEEPEQIE-------QSYASCQPWPEQVVLDGERETLGLYL 961 + D + PE + ++ P + + + L + Sbjct: 938 SPVESTPGDTTKEDRQIITKRMPESTDMGGTLMPRTATPLAPMTPAERMHADFRGMNLTV 997 Query: 962 TGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDD 1021 HP+ ER R D+ G+ + AG V+ + T +G +L+D Sbjct: 998 GTHPMALVR---ERLPDVWRAADLPLGRDGERVKVAGSVICRQRPGTAKG--FVFVSLED 1052 Query: 1022 RSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDE 1075 +G V+++ D ++ + + ++ L + G++ D +K E +++ E Sbjct: 1053 ETGIANVVVYPDLFEQRRMTINEEPALCIVGRMQSDRGVIHVKAETIEALNLAE 1106 >UniRef50_Q1AUQ9 DNA polymerase III, alpha subunit n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AUQ9_RUBXD Length = 1084 Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust. Identities = 342/1073 (31%), Positives = 516/1073 (48%), Gaps = 66/1073 (6%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F HL S +S G+A L AA +GM ALA+TD L G+ + A GAG+ PI Sbjct: 4 FAHLHARSGFSYGFGVATPEELAGAAARMGMWALALTDRDGLYGVPRLLAACEGAGVSPI 63 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 VGA+ + +E H+ +LAA GY++L+ LI+ P+ L+E Sbjct: 64 VGAEVGM------EEGGHVVLLAAGMEGYRSLSRLITAYRCSSEDRRRPVCPLPVLLEHA 117 Query: 126 EGLILLSGG-RMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRTGRPDEESYLH 183 EGL+ L+G G + R +L G + V E F F EL + Sbjct: 118 EGLVCLTGAVPFGLLPRLVLSGREKQARKVVGLLREAFGAAGVFAELSDDRTAGSRRRMA 177 Query: 184 AAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSP--QQYMR 241 A GLPVVATN+ ++ D HE+ VA + L P Y P Q +++ Sbjct: 178 RVAAFARECGLPVVATNEAAYLRPEDHRLHEVLVAASNLTRLPGP----GYRPTDQLWLK 233 Query: 242 SEEEMCELFADIPEALANTVEIAKRCNVTVRL-GEYFLPQ--FPTGDMSTEDYLVKRAKE 298 M LF PEALAN +A+RC +VRL G+ +P P G+ + Sbjct: 234 PPGAMRRLFEGYPEALANAALVAERCAGSVRLSGKVHMPAAVLPEGETA----------- 282 Query: 299 GLEERLAFLFPDEEERLKRRP--EYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGV 356 E RLA L + R RP RL EL I +G YFLI E + +++ GV Sbjct: 283 --EGRLARLVGEGARRRYGRPGDRVWRRLRRELACIGALGHAAYFLIAHEAKEIARERGV 340 Query: 357 PVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIE 416 PV GRGS A S+VAY L +T +PL LLFERFL+ R PD D+D E RD V Sbjct: 341 PVS-GRGSAANSMVAYCLGLTSPEPLGNRLLFERFLHEGRKDPPDIDLDLDSELRDGVRN 399 Query: 417 HVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP-----DPGMTL 471 + YGR + T TM+ + +R R LGHP +DR+S+ +P D Sbjct: 400 ELMGRYGRHGAAVAATAETMSLRGAVRVAARALGHPPEEIDRLSRHVPARFRDRDRVYAG 459 Query: 472 AKAFEAEPQLPEI----YEADEEVKALIDMARKLEGVTRNAGKHAGGVVI--APTKITDF 525 +E + P + + L++++ +L G AG H GGVV A +++ Sbjct: 460 IDGWEEALREPAMRGHPLRDRRRHRLLLELSARLCGRLWQAGTHNGGVVFGTAERHLSEL 519 Query: 526 APLYCDEEGKHPV--TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPP 583 PL + GK + Q+DK D+EY GL K D LGL+ T + A E+ + R + Sbjct: 520 VPL--EPSGKEGLLRCQYDKDDLEYVGLPKLDLLGLKMHTALRKAGELASARLGEE---- 573 Query: 584 LDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPL 643 +D A+P D ++ +++ T +FQLES G L RL+P F D++A V+LFRPGP+ Sbjct: 574 VDPYALPPGDGATYALIRTGRTAGIFQLESPGQMSLSTRLKPRRFPDLVAQVSLFRPGPV 633 Query: 644 QSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLG 703 + +V +++R++GRE + P E L+PVL PTYG++++QEQV+++ ++G++L Sbjct: 634 RGDLVTPYVNRRNGREPYTVP-----LEELEPVLRPTYGVMVFQEQVLEVCHRVAGFSLA 688 Query: 704 GADMLRRAMGKKK-PEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSA 762 D++RRAM + + P M + R F A G+ E A ++F+ +E F+ YGF+ +H A Sbjct: 689 EGDLVRRAMTRARGPGAMRELRERFVGSAVGRGVPREKAEEVFEWMEGFSVYGFSAAHGA 748 Query: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 ++A ++Y + +++ HYPAEF ++ + L++E R GL +LPPDI+ Sbjct: 749 SFAEIAYASAYMRVHYPAEFFCGLLNSQPMGFYSPRVLLNEARRAGLSVLPPDIHLSGEG 808 Query: 823 FHVNDDGEIV-YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEK 881 F V DG + G+ KG+ E I +I+ R + F DL RT + R L Sbjct: 809 FTVEGDGTALRVGLSYCKGLSERAIASIVSERER-EPFASAADLYRRT---AVERDSLRD 864 Query: 882 LIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASC 941 +I +G D LG R L+ G L + E I A AE + Sbjct: 865 MIRAGFLDALG-DRGRLLGEAGR-LPEKRRRGDQEEIPPAHPASWWAERETRGGGDAPVG 922 Query: 942 QPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVV 1001 P E E E LGL + HP+ Y + R +G V ++ G+ + AGL+ Sbjct: 923 LPLAEDARERMEWEVLGLNVRRHPLEPYRAAL-RELGVVPSEEAKGLAHGRRVRVAGLIE 981 Query: 1002 AARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQV 1054 + T+ G+ + ++D G L+ +F +Y LL ++ G+V Sbjct: 982 CLQHPPTRSGHPVWFLLIEDERGLLQATVFRRVYGRYGDLLHHGGAFLLEGRV 1034 >UniRef50_A0LGS3 DNA polymerase III, alpha subunit n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LGS3_SYNFM Length = 1003 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 328/1097 (29%), Positives = 520/1097 (47%), Gaps = 155/1097 (14%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL VHS YSM+ G++ L + A+ALG LA+TD GL+ F A GI PI Sbjct: 5 FVHLHVHSHYSMMRGVSSVTALCRTASALGFEHLALTDDKGFYGLINFLDAARRFGIHPI 64 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 VG D VLA GY+ L+ L ++ + +D D+ Sbjct: 65 VGTTIGTGPDTA-------VVLAKTPRGYELLSELTTRRH----------LDADF----- 102 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 185 SLLR FPD ++ T P+ LH Sbjct: 103 ----------------SLLRD---------------FPDGRRDLVVLTANPEIIKALHPR 131 Query: 186 VE----------------LAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPK 229 E +A + G+P VATN V F D+ H + AI TL + Sbjct: 132 RECGVEVVPGPGDRRLLKMAHSLGVPPVATNAVHFAHLEDYSLHRLVRAIDLNLTLSNIP 191 Query: 230 RPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTE 289 R P Q+++S +M PEALANT+++A C+ ++F FP E Sbjct: 192 REEIVRPDQWLQSAAQMERRLPHCPEALANTLKLAGECHTK---WDHFRTIFPHYRDRRE 248 Query: 290 DY---LVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVME 346 D+ L+++ ++G+ R + P +ERL EL +I G+ YFL+V + Sbjct: 249 DHFALLLEKCRKGISWRYG----------RTSPAVEERLAEELDLIGAKGYVDYFLVVAD 298 Query: 347 FIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 406 + P+ GRGSGA SLV+Y L IT +DPL +LLF RFLNPER +PD DVDF Sbjct: 299 IV-----GRRPIHCGRGSGAASLVSYLLGITHVDPLRHNLLFGRFLNPERKDLPDIDVDF 353 Query: 407 CMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIP-- 464 ++RD + E + YG + ++ + A+A +R+V RV G P + +++ + Sbjct: 354 PWDERDDLFEELRRHYGAERMATVANHVGFGARAAVREVARVYGVPAAEIKEVTRRMSFW 413 Query: 465 PDPGMTLAK--------AFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVV 516 +PG + F +P PEI ID+A +LE + R+ H GGV+ Sbjct: 414 TEPGAMWERIGTHPKFRGFPLDPPWPEI----------IDLAGRLESLPRHLSMHCGGVI 463 Query: 517 IAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRR 576 IAP +I+ P+ +G + Q++K E AGLVK D LG R+L +I +L I + Sbjct: 464 IAPDRISRHVPVQRSAKGAR-IIQWEKDQAEKAGLVKIDLLGNRSLAVIRDSLAAIRENY 522 Query: 577 AKNGEPPLDIAAI-PLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALV 635 K+ L+ A + P+DD + + ++ T VF +ES M+ L ++ FE ++ Sbjct: 523 GKD----LEYARLNPVDDPDTREQIRTGRTMGVFYVESPAMRLLQQKAGCGDFEHLVIHS 578 Query: 636 ALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQ 695 ++ RP + + +++DR HG + H SL +L YGI++YQE V+Q A Sbjct: 579 SIIRPA--ANRYIRDYLDRLHG------APYEPLHPSLAGLLAENYGILVYQEDVVQAAM 630 Query: 696 VLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYG 755 +L+G++ G AD LR+ + KK E+++ RS FA G G++ ++ +++++ F+GY Sbjct: 631 ILAGFSWGEADGLRKVISKKSREQLSDYRSRFARGCAARGVSPDVVDRVWEMFISFSGYS 690 Query: 756 FNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPD 815 F K HSA+YALVS+++ +LKAHYPAEFMAAV++ + V E RMGL + PD Sbjct: 691 FCKPHSASYALVSFKSAYLKAHYPAEFMAAVLS-NGGGYYSTFAYVSESRRMGLTVAGPD 749 Query: 816 INSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLN 875 IN +++ D + G+ ++ + +E I+ R K G F + +L R D + Sbjct: 750 INESAWNYRGGDRC-VRMGLRQLQNIRRSTLEDILAERGKNGPFASVEELLRRVDIPPSD 808 Query: 876 RRVLEKLIMSGAFDRL--GPHRAALMNSL-----GDALKAADQHAKAEAIGQADMFGVLA 928 +L + SGA D L G +R L+ + G +K H + A + V+ Sbjct: 809 GMILAR---SGALDSLSGGLNRPRLLWFIEAWFNGAGVKGTAGHGQISAFPRPRARIVVP 865 Query: 929 EEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHP---INQYLKEIERYVGGVRLKDM 985 P ++ Q W E ETLG L+ HP + +++ V + D+ Sbjct: 866 PLP-----GFSPRQTWRH------EMETLGFVLSVHPLAMVEPMARKLPHRV--TKAADL 912 Query: 986 HPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKD 1045 H G+ + AG + + ++T+ G + + +DR+ E + F A ++ Q ++ + Sbjct: 913 H-RHVGERVCTAGWPITRKEVLTREGEPMEFVSFEDRTAIYETVFFPSAFRRFCQDIDMN 971 Query: 1046 RILIVSGQV--SFDDFS 1060 R ++ G+V FD S Sbjct: 972 RGYLILGKVESEFDTVS 988 >UniRef50_Q8EWK5 DNA polymerase III subunit alpha n=1 Tax=Mycoplasma penetrans RepID=Q8EWK5_MYCPE Length = 990 Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust. Identities = 289/912 (31%), Positives = 470/912 (51%), Gaps = 86/912 (9%) Query: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 P ++L +S YS++ +++ A + +TD TNL G+++FY + Sbjct: 11 PLVLNLNTYSHYSLLSSSLSLDQIIEFAINEEKKYVCLTD-TNLYGVIEFYLKCKDKNLM 69 Query: 64 PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIE 123 P++G N Q L+ + + A N GY NL + S Sbjct: 70 PVIGLSINSQ--LIENTKYDFVLFAKNKKGYLNLVKISS--------------------- 106 Query: 124 LNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLH 183 L++ YE + D + ++ + G D ++ Sbjct: 107 -----FLMTNNDFN--------------------YENYLSDLFIVD--KNGTFDFKT--D 137 Query: 184 AAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFT--LDDPKRPRNYSPQQYMR 241 + V + +A N+ R+ + +D AI + T +D+ + ++ S + Sbjct: 138 SKVYSINPKDKNAIAFNEARYFNKNDKRVFNALQAIKNNRTVSIDELEEGQDLS----LL 193 Query: 242 SEEEMCELFADIP-EALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEG 299 +E E LF D+ E L N + K N+ + + + ++P ++S + L K +G Sbjct: 194 TESESVSLFNDVQIENLNNEI---KEVNLEIEFEKNNIIKYPNESNLSDKALLHKFCMDG 250 Query: 300 LEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVG 359 L E++ ++E + Y ER+E ELQ+I+ MGF YFL+V +FI +K+ G+ +G Sbjct: 251 LNEKIF----NKEIDSNSKDTYIERMEYELQIIDDMGFNDYFLVVQDFINDAKNKGILIG 306 Query: 360 PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVA 419 PGRGS AGSL+AY L IT++D ++++LLFERFLNP R++MPD D+D +RD+V+E++ Sbjct: 307 PGRGSAAGSLIAYLLGITEIDSIKYNLLFERFLNPGRITMPDIDIDIMDIRRDEVVEYLF 366 Query: 420 DMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEP 479 + YG D V+ IITF + AK +RD+GR+L ++ I K I D LA A + Sbjct: 367 EKYGYDHVAHIITFQKIKAKMALRDIGRILNIDLKIINSICKSITKDLEEDLANAINTK- 425 Query: 480 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 539 +L + Y++ K L D+A + G R G HA GVV++ +TD P+ G+ T Sbjct: 426 KLQDAYKS---YKDLFDLAIGIMGCPRQVGIHAAGVVLSQKVLTDIVPIQTSVNGE-ITT 481 Query: 540 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 599 Q+ +E GL+K D LGL L+ IN ++I N +++A + L+D+ F Sbjct: 482 QYSMDYLEDLGLIKMDLLGLTNLSTINHVCKLI----KMNHGIEINLAKLNLEDQNVFLD 537 Query: 600 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 659 LQ+ T +FQLES GM ++K+++P C ED+ ALFRPGP+Q+ + F+ R+ G E Sbjct: 538 LQQGHTLGIFQLESEGMTSVVKQVKPVCIEDISICSALFRPGPMQN--IKPFVRRREGFE 595 Query: 660 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 719 ++ Y DV+ K +LEPT+GII+YQEQV+ + + ++ ++L ADM RR + KKK E Sbjct: 596 KVEYIDVKN-----KDILEPTHGIIVYQEQVINLVRRIANFSLSEADMFRRIISKKKGHE 650 Query: 720 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 779 + + +F E A KN + +I++ + FA YGFN SHS AY+L+ Y +LK +YP Sbjct: 651 LDNFKKMFFENALKNDYTQDRLEQIYNYIYTFADYGFNHSHSVAYSLIGYWMAYLKHYYP 710 Query: 780 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 839 EFM +MT ++ K+ V+EC R+ + I PDIN F + I++G+ +IK Sbjct: 711 IEFMIILMTFSENDKNKIDLYVNECKRLNINIRKPDINISNKSFGLYKKNTILFGLNSIK 770 Query: 840 GVGEGPIEAIIEAR--NKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAA 897 G+G + IIE R NK F + + + + K+ LE LI +G FD + Sbjct: 771 GIGVETSKKIIEIRTNNKDKKFSDFCEAIKKLSSNKVGISTLETLINAGTFDGFKLSKKY 830 Query: 898 LMNSLGDALKAA 909 ++ +L + AA Sbjct: 831 MLENLPIIVDAA 842 >UniRef50_B7IZN8 DNA polymerase III, alpha subunit n=1 Tax=Bacillus cereus G9842 RepID=B7IZN8_BACC2 Length = 1163 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 340/1063 (31%), Positives = 506/1063 (47%), Gaps = 164/1063 (15%) Query: 83 HLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIE--LNEGLILLSGGRMGDVG 140 H+ +LA NN G ++L ++S A+ G+ + P D ++ + L +I S Sbjct: 186 HMVLLAINNKGLEDLYAIVSDAHINGF-YSDPRTDLAYIRDRGLGNNIIATSACLGSYFS 244 Query: 141 RSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAV-ELAEARGLPVVAT 199 + +L G E + ++ F + ++LE T P ++ Y++A + +LA P + T Sbjct: 245 QLVLAGRIEEAKEHIHECKDTFHE-FYLEKQATEIP-KQIYVNAVIDQLAAETNTPKILT 302 Query: 200 NDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALAN 259 DV + + D + H+I V G ++D R Y+ + +M++EEEM DI EA N Sbjct: 303 TDVHYANKEDNEIHDILVTSSIGKCINDENRLV-YAHEFWMKTEEEMLVKCNDI-EAWKN 360 Query: 260 TVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRR 318 T+ IA + NVT+ E P F G + ED L K+A +GL E D Sbjct: 361 TMRIANKVNVTLP-KEPLFPNFIVDGSETVEDLLRKKAWDGLFEMALTDGIDVNS----- 414 Query: 319 PEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITD 378 Y +RL+ EL VI GF YFLI + I + G VGPGRGSGAGSLV LKIT Sbjct: 415 --YSKRLQYELDVICSEGFQDYFLIEEDMIDAAVKAGFLVGPGRGSGAGSLVCRCLKITW 472 Query: 379 LDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAA 438 LDP++++LLFERFLNPER PD DVD+ E V+ ++ YG D V+QI T GT+AA Sbjct: 473 LDPIKYNLLFERFLNPERAGYPDLDVDYSYEGTRFVLNYLKQKYGIDKVAQIGTKGTLAA 532 Query: 439 KAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQL-------PEIYEADEEV 491 +AV R G+ LG D +K IP PG+TL +A+ E + P+ +EA Sbjct: 533 RAVCRRTGKTLGLDTATQDAFAKAIPSRPGITLKEAYAEESMVQQYAQMYPKWWEA---- 588 Query: 492 KALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGL 551 LEG G HAGG+V++P IT PL D EG TQ+D +E L Sbjct: 589 ------MLALEGHVSQVGVHAGGIVLSPEPITKVTPLRTDSEGIE-TTQYDMVWIEKL-L 640 Query: 552 VKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQL 611 VKFD L + TL I+ LE N +DI PL ++ ++ L S +FQ Sbjct: 641 VKFDVLKVETLDIVKKTLEFAGLWGKMNIYRDIDIND-PLVFERVYNALNLS---GIFQC 696 Query: 612 ESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHE 671 ES K +I ++P+ FED+ +VAL RPGPL ++ ++ RK GREE+ YP Sbjct: 697 ESDLFKKIISEMKPNSFEDISVIVALGRPGPLD--LIPTYVARKWGREELKYP-----FS 749 Query: 672 SLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKK--------------P 717 +L+PVL+ TYG+ +YQEQ+MQ ++VL G TLG +DM+R+ + KKK Sbjct: 750 ALEPVLQETYGVWVYQEQIMQASRVLGGLTLGQSDMIRKGVSKKKHDLMNRWIDLMIYGS 809 Query: 718 EEMAKQ-------------------------RSVFAEGAEKNGINAELAMKI-FDLVEKF 751 EE K+ + + EGA G + + ++I D + KF Sbjct: 810 EEYKKRHAELVLQYPKDAEGKPTLWVDYDYAKQPYVEGAINRGFDEQTLLQIKIDWI-KF 868 Query: 752 AGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMT-----ADMDNTEKVVGLVDECWR 806 Y FNK+HSAAYAL+S T WLK +YP EFM+A++T D + K + + EC Sbjct: 869 GNYCFNKAHSAAYALLSVVTAWLKCYYPVEFMSALLTFSERKKDKNKKPKNIYYMKECEE 928 Query: 807 MGLKILPPDIN----------------------SGLYHFHVNDDGEIVYGIGAIKGVGEG 844 MG+ ILPPDIN +G +N EI YG+ +I GV Sbjct: 929 MGITILPPDINESMAGWAPIKTETKGIFLANSFAGFTTETINKSNEIRYGLSSIAGVSGE 988 Query: 845 PIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGD 904 ++ I++ R ++ + D+ R D K+N+ + LI SG+FD L +R L+ Sbjct: 989 TVDEIMQNRP----YKSVEDMLLRVDGSKVNKTKVTALIKSGSFDNLSKNRNLLLR---- 1040 Query: 905 ALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGH 964 + EE E I ++ ++D E+E G+ +T Sbjct: 1041 -----------------NYMQFRNEEYEHIPKTTNKGD------IVDFEKECFGVSITVK 1077 Query: 965 PINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSG 1024 + L+E GK G++ + + G +L+ + Sbjct: 1078 SRWEKLEE------------------GKSAQFTGVIRSVESWKARTGKTHYTLSLETQEE 1119 Query: 1025 RLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTA 1067 + V ++ ++KYQQ L + + G+ S D F+ T Sbjct: 1120 VIMVTVWGYLMEKYQQTLRLGNKITIKGEKSRDKFTANFFQTT 1162 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 35/65 (53%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 R HL VHS+ S+++GL+ LV KA + GM AL ITD + F GIKP Sbjct: 3 RGCHLHVHSEESVLEGLSNVKHLVAKAKSSGMTALGITDHGVCSAIPDFITECLANGIKP 62 Query: 65 IVGAD 69 I G + Sbjct: 63 IPGCE 67 >UniRef50_Q9PQ74 DNA polymerase III subunit alpha n=15 Tax=Ureaplasma RepID=DPO3A_UREPA Length = 969 Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust. Identities = 282/893 (31%), Positives = 450/893 (50%), Gaps = 92/893 (10%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F++L VHS YS+++ L+K A P + +TD N+ G ++FY + PI Sbjct: 2 FINLNVHSHYSLLNSTLSIDDLIKYALDNKQPYVCLTDLNNMYGCIEFYDKAKAHNLTPI 61 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIID-RDWLIEL 124 +G +F YQN TL+ AY + Y +I W++ Sbjct: 62 IGLEFE----------------------YQNATLV---AYAKNYNGYLKLIKWSSWIMTS 96 Query: 125 NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHA 184 E I D+ +G +V + FY+ H Sbjct: 97 KEFEI---QDDFDDLIIVCKKG--TIVFKSPNFYQTH----------------------- 128 Query: 185 AVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEE 244 + +A V + + +D +AI + L+D K ++ ++ + Sbjct: 129 -----DQNAPNAIALQSVFYANKNDKIVFLAMLAIKNDLKLEDFKNCCDFDNNHFLN--D 181 Query: 245 EMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF-PTGDMSTEDYLVKRAKEGLEER 303 + + F P AL N ++ V + +P + + + + L + GL++R Sbjct: 182 NLAQSFFS-PIALNNLNKVLNELKVQIHDLPINIPVYDKQNSIISSEILKQLCISGLKKR 240 Query: 304 LAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRG 363 L + Y +RL+ EL VIN+ F YFLIV +FI ++K NG+ VGPGRG Sbjct: 241 L------NANDGQVNKIYVQRLKYELDVINEKQFDDYFLIVYDFINFAKSNGIIVGPGRG 294 Query: 364 SGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYG 423 S AGSLVAY L ITD+DP++ +L+FERFLNP R SMPD D D EKRD VIE++ + YG Sbjct: 295 SAAGSLVAYCLHITDIDPIKHNLIFERFLNPTRKSMPDIDTDIMDEKRDLVIEYLFEKYG 354 Query: 424 RDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPE 483 D V+ I+TF + AK IRDVGR+LG +D+I K I P+ L A + L E Sbjct: 355 NDHVAYILTFQRLKAKMAIRDVGRILGIDLKVIDKICKNIKPEYDEDLDLAIKKNTILKE 414 Query: 484 IYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDK 543 +Y +E L ++++KL R G HA G++++ + I++ P+ + P++Q+ Sbjct: 415 MYLLHKE---LFEISKKLINAPRQIGTHAAGIILSDSLISNIIPIQLGINDR-PLSQYSM 470 Query: 544 SDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRS 603 +E GL+K D LGL+ LTII+ L+MI +N +D+ I +DK F+ L ++ Sbjct: 471 EYLERFGLIKMDLLGLKNLTIIDNVLKMI----YENQNKKIDLFNINYNDKFVFEDLAKA 526 Query: 604 ETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISY 663 T +FQLES GMK ++ +++P ED+ + ALFRPGP Q+ + F++R+ REE SY Sbjct: 527 RTNGIFQLESPGMKKVLLKVKPQNIEDISIVSALFRPGPQQN--IKTFVERRFKREEFSY 584 Query: 664 PDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQ 723 W +E+ + +LEPTYGII+YQEQV+++ + ++ + + +D RRA+ KK + + + Sbjct: 585 ----W-NEATRKILEPTYGIIVYQEQVIELVKTIANFDIATSDNFRRAISKKDEKILIQL 639 Query: 724 RSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFM 783 + F GA N L +IF+ + FA YGFN SHS AY+ +SY +LK +Y EF+ Sbjct: 640 KDDFINGALNNNYKQPLVNQIFEYIFSFAHYGFNHSHSLAYSYISYWLAYLKHYYTLEFL 699 Query: 784 AAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIV-YGIGAIKGVG 842 + +++ + +K++ ++E + I PDI F ++ +I+ +G IKG G Sbjct: 700 SVLLSHTSASKDKLLSYLNEAKEFNISIKGPDIQYFSNDFVIDTQKQIIRFGFKTIKGFG 759 Query: 843 EGPIEAIIEARNKGGYFRELFDLCARTDTKK---LNRRVLEKLIMSGAFDRLG 892 + ++ I A K L D + D K ++ + +E LI G FD G Sbjct: 760 DELLKKIKSALQKST----LSDYISYIDALKKGNVSLKNIEILIRVGTFDSFG 808 >UniRef50_Q04F63 DNA polymerase III, alpha subunit n=5 Tax=Oenococcus oeni RepID=Q04F63_OENOB Length = 960 Score = 432 bits (1110), Expect = e-119, Method: Compositional matrix adjust. Identities = 304/1080 (28%), Positives = 516/1080 (47%), Gaps = 136/1080 (12%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 + L+V S+Y ++ T LVK G A + + L G KF A I+PI Sbjct: 3 YTPLQVFSEYDLLRNPDSTIELVKALKKRGFQAAVLANHDYLYGAEKFRQAAISVNIRPI 62 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 +G + + + ++ N +GYQN L+ + + I ++ ++ + Sbjct: 63 IG------LTISDTDHGEVIFVSKNYSGYQN---LMKISTYLAFNKNSQFILKENNLDFS 113 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 185 ++ G+ + ++ +S+ + + + FP ++ ++ Sbjct: 114 NLALIFQDGK-----ETKIKNSSSFTRKELGY----FP----IDWVKKN----------- 149 Query: 186 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 245 + A L + N++ F S+ G L D + P + +++ + Sbjct: 150 -DSVTASALQHIEKNELNFTGKSEIV----------GKYLKDENFYASNLPDEILKNNQH 198 Query: 246 -MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMST--EDYLVKRAKEGLEE 302 + ++ D P++ E LP FP D + YL K K GLE Sbjct: 199 FIADIVDDWPKS------------------EKHLPIFPLPDSENNPKKYLSKLVKLGLEN 240 Query: 303 RLAFLFPDEEERLKRRPE-YDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPG 361 R + K PE Y +R++ EL+ I Q+ YFL+V + I +++ + +G G Sbjct: 241 RF---------KNKDIPEAYQKRIDRELRTIFQLDLADYFLVVWDIINFARHENIQLGAG 291 Query: 362 RGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADM 421 RGS GSLVAYAL IT +DP+++DL FERFLNP+R+ +PD D+D +R +++E++ Sbjct: 292 RGSAVGSLVAYALYITTIDPIKYDLYFERFLNPKRIQLPDIDIDVPGNRRQEIVEYLQKK 351 Query: 422 YGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFE-AEP- 479 Y D SQI TF T + +RD R+ G + R S+ + + A E A+P Sbjct: 352 YSLDNFSQIGTFDTFKRRLAVRDSARIFASSEGTLKRFSRFMAQN-----NDALEDADPN 406 Query: 480 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 539 LPE +I +A+ + G+ R+ G HA G+V++P K+ ++ PL ++ VT Sbjct: 407 NLPETIAELPNSSEIISLAQSISGLPRHVGIHAAGIVLSPEKLVNYVPL--NQVSDITVT 464 Query: 540 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 599 QFDK DVE GLVKFD L L L +I +I + K ++ +I L+DKK D Sbjct: 465 QFDKDDVEAIGLVKFDLLRLTNLDMIADIRSLIQQHYGK----KFNLDSIDLNDKKVLDS 520 Query: 600 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 659 + +T +FQ ES K +K++ F+D++A+ AL RPGP +N G++ Sbjct: 521 FKNLQTNGIFQFESESAKSALKQIAVSSFDDIVAVNALNRPGP-----SENIPIYAQGKK 575 Query: 660 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 719 + ++ ++ +SL+ +L PTYG+I+YQEQVMQIAQV +G+TLG AD+ R A+G K E+ Sbjct: 576 DPNH--IEIIDKSLQKILLPTYGVIIYQEQVMQIAQVYAGFTLGEADVFRAAIGHKNEEK 633 Query: 720 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 779 + Q F +GA + G E A +IF +E+FA YGFNKSH+ AY+ ++++ +LK ++P Sbjct: 634 LFAQHDAFIKGAVEKGHQQEQAEEIFAYIERFANYGFNKSHAVAYSKLAFEMAYLKIYFP 693 Query: 780 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 839 EF + ++ D N+ + + G+K+L PDIN F ++D G I G+G IK Sbjct: 694 LEFFSVLLNYDTKNS-----YLQDIKNKGIKLLGPDINHAERGF-ISDKGVIYVGLGKIK 747 Query: 840 GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 899 G+ I+ I++ RN G F L D R + + +L +G+ D G +R L Sbjct: 748 GLNRKVIDEIVKERNSHGLFSGLTDFLQRMAGSDIGESDIVQLTYAGSLDHFGYNRQELK 807 Query: 900 NSLGDALKAAD------QHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGE 953 + + A + K AIG+ + LA E Sbjct: 808 TNAASLITAMEFGGSLLSETKISAIGEMSLLDRLAH-----------------------E 844 Query: 954 RETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNR 1013 +E LG ++GHPI+ KEI + G ++ D+ + ++ A ++ + R K GN+ Sbjct: 845 KEVLGFTISGHPIDSLRKEIVKK-GYTQINDLKADQ---IVKMAVMIDSIRTTRDKNGNQ 900 Query: 1014 IGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDI 1073 + ++ D SG + +F + +L+ ++ + G+ + G + + A ++ I Sbjct: 901 MAFVSISDGSGESSLTVFAREYSQMSGVLKNGSLIALIGRTQLRN--GEINIIANKIQQI 958 >UniRef50_C1F6L4 DNA polymerase III, alpha subunit n=2 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F6L4_ACIC5 Length = 1072 Score = 432 bits (1110), Expect = e-119, Method: Compositional matrix adjust. Identities = 328/1090 (30%), Positives = 537/1090 (49%), Gaps = 76/1090 (6%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M+E R+V L S +S ++G + L ++AAAL MPA+A+ D L G +F+ + Sbjct: 1 MTE-RYVELHAASAFSFLEGGSNPESLTERAAALQMPAMALLDRNGLYGAARFHTSAQRH 59 Query: 61 GIKPIVGADFNVQ------------CDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRG 108 G++ +GA+ V L E L +L A GYQNL LIS+ R Sbjct: 60 GVQANIGAEVAVPEFGARLTPPAWLPHLWPTEPVRLPLLCATRKGYQNLCQLISRYKLRE 119 Query: 109 YGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRY-F 167 + L + EGLI L+GG G + +L++G A + + F ++ + Sbjct: 120 PSKQEGAARVNELEQFAEGLICLTGGSEGPLAAALMQGGEAAGQKLLHRLTAIFGHQHVY 179 Query: 168 LELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDD 227 +EL R ++E AA+ +A LP+VATN VR+ D + ++ AI LD Sbjct: 180 VELQRHHDREQEWRNQAALRIAHKLRLPMVATNGVRYASERDREVLDLFTAIRHHTPLDR 239 Query: 228 PKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT--GD 285 + + +++RS EM LF DIP A+ NT+E++ R + Y P++P GD Sbjct: 240 AGHLLSANSLRHLRSAREMAALFRDIPAAIENTIELSSRLAFQLSDLGYEFPRYPVPAGD 299 Query: 286 MSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVM 345 + +L KR +EG+ L + + L R +++E EL +I ++GF GYFLIV Sbjct: 300 -CMDSFLRKRVQEGVA--LRYNSRHNHDLLAR---VHKQVERELSLIARLGFAGYFLIVW 353 Query: 346 EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405 + I++ K + + V GRGS A S+V YAL+IT +DP+ DLLFERFLN R PD D+D Sbjct: 354 DIIRFCKQHDILV-QGRGSAANSVVCYALEITAVDPVGMDLLFERFLNENRGEWPDIDLD 412 Query: 406 F-CMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIP 464 EKR+Q I++V YG + T K+ R+VG+ LG + R+S L+ Sbjct: 413 LPSEEKREQAIQYVYQRYGELGAAMTANVITYRGKSAAREVGKALGFDADALQRLSGLVA 472 Query: 465 ----PDPGMTLAKAFEA---EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVI 517 P +LA +F +P P I E + DM R L G+H+GG+VI Sbjct: 473 NFEWKGPTDSLAHSFRHAGFDPAQPRIARYLELCTRIQDMPRHL-------GQHSGGMVI 525 Query: 518 APTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRA 577 ++ P+ V Q+DK D G++K D LGL + ++ +E+I + Sbjct: 526 CQGQLNQVVPVERASMPGRTVVQWDKEDCADMGIIKVDLLGLGMMAVLKDCVELIPRHYG 585 Query: 578 KNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVAL 637 + +D+A +P D+ + LQR++T +FQ+ESR + R P F D++ VA+ Sbjct: 586 ER----IDLAQLP-QDEAVYRTLQRADTVGMFQVESRAQMASLPRNMPAKFYDLVVQVAI 640 Query: 638 FRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVL 697 RPGP+ M+ ++ R+ G+E ++YP H SL+PVL+ T G+ L+QEQ+++IA + Sbjct: 641 IRPGPIVGKMMHPYMRRRQGKEPVTYP-----HPSLEPVLQRTLGVPLFQEQLLRIAMTV 695 Query: 698 SGYTLGGADMLRRAMGKKKP-EEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGF 756 + ++ A+ LRRA+G ++ E M S G NGI +I + FA YGF Sbjct: 696 ANFSGTEAEELRRAVGMRRSWERMKNLESKLRAGMAANGIAPATQEQIIQQISSFALYGF 755 Query: 757 NKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDI 816 +SH+A++AL++Y + +LK Y A F A++ +V + R GL++ P DI Sbjct: 756 PESHAASFALIAYASAYLKVKYLAAFTCALLNNQPMGFYMPAVIVKDAQRHGLRVKPIDI 815 Query: 817 NSGLYHFHV----NDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTK 872 + + +D + G+G +G+ + EA + AR + G F +L AR Sbjct: 816 QISAWPCTLEQEPDDSLSLRLGLGYARGLRQRTAEATLHARQENGPFSSAENLVARVPA- 874 Query: 873 KLNRRVLEKLIMSGAFDRLG--PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEE 930 L+R+ L L GA + L HR DAL ++ K E + A+ Sbjct: 875 -LSRKELALLARIGALNSLDQVAHRR-------DALWQIERAGKPEG-------PLFAQS 919 Query: 931 PEQI-EQSYA-SCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPT 988 E + EQ A P + L + GL + HP++ +E++ + G + + Sbjct: 920 NEALREQDVALPLMPMTTEERLVADYFGTGLTVGKHPMSYRRQELD-HAGILTASALQQF 978 Query: 989 ERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRIL 1048 + GK++ AG V+A + T +G +++D +G +++ D ++ + ++ + + L Sbjct: 979 QDGKLVRVAGCVIARQRPGTAKG--FVFLSMEDETGIANIIVTPDLFERERLIVTRSKFL 1036 Query: 1049 IVSGQVSFDD 1058 +V G + D Sbjct: 1037 LVEGPLQNQD 1046 >UniRef50_Q05FW7 DNA polymerase III alpha subunit n=1 Tax=Candidatus Carsonella ruddii PV RepID=Q05FW7_CARRP Length = 1113 Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust. Identities = 283/898 (31%), Positives = 484/898 (53%), Gaps = 30/898 (3%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 +F HL VH++YS+IDG+ K L++ LG+ +++ITD + ++Y IKP Sbjct: 3 KFTHLNVHTEYSIIDGIIKIGKLLQIYNKLGIKSISITDILTIASFPEYYEYSLKKKIKP 62 Query: 65 IVGADFNVQCDLLGD-ELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIE 123 I+G +C LL + ++ +L ++A N GY L +IS A++ G G + WL + Sbjct: 63 IIGT----ECFLLINGKILNLILIAKNYLGYLKLIKIISNAWRYGNIENGVFLKLHWLYK 118 Query: 124 LNEGLILLSGGRMGDVGRSL-LRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYL 182 LI++ R + S + E Y +F + E+ R EE Sbjct: 119 FKNKLIVIINLRYYLLESFFNFCEFSIFIKELTINYNNNF----YFEINRINLSLEELIN 174 Query: 183 HAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRS 242 + + ++ + +VATN V+FI DF + ++ I + + K +YS QQY+++ Sbjct: 175 NKIIYFSKLFNIKLVATNSVKFIFKKDFPINLSKILICQN-KIFEEKLFFDYSNQQYIKT 233 Query: 243 EEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKEGLEE 302 ++M +LF DI E++ N I CNV ++ LP+ + K+ + L + Sbjct: 234 YKDMKKLFFDILESIENINLIILNCNVLFNFYKFNLPKIKISNFKIR----KKIFDNLVK 289 Query: 303 RLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGR 362 A L +++ K+ Y R+ E+ + ++G Y+LI+ EFI W++ + GPGR Sbjct: 290 --AGLKKRIKKKNKQIKIYLNRVNKEVLLTKKLGLIDYYLIITEFIFWTRKKNIISGPGR 347 Query: 363 GSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMY 422 GSG+ SL+ Y+L ITD+DP+ +LLFERF + ER+ +PD D+DFC+ +RD +I H+ + Y Sbjct: 348 GSGSSSLLCYSLYITDIDPINENLLFERFFSSERLGIPDLDLDFCVLERDNIISHLYNYY 407 Query: 423 GRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLP 482 G + +SQI+TF T++AK+ IRD+ R +G Y +R S+ +P +++ F + Sbjct: 408 GYNNISQIVTFHTVSAKSSIRDLSRAIGMDYISGERFSRSVPFSIELSMEHIFRENISVR 467 Query: 483 EIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFD 542 + + + ++ KLEG+ RN KHAGGVVI T + +F P+ DE +T ++ Sbjct: 468 SYISKNHKCFEIWKISSKLEGIARNISKHAGGVVICNTGLNNFTPILFDEN--ECMTHYE 525 Query: 543 KSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQR 602 K ++ GL+KFDFLGL+TL+ I+ L+MI+++ GE +DD +F M+ Sbjct: 526 KIILQDIGLIKFDFLGLKTLSTISLTLKMISEKNT--GE-------FFIDDYHTFQMINN 576 Query: 603 SETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEIS 662 +T +FQLES G+K +IK+L + D+I L++L+RPGP+QSG +++FI+RK+ + Sbjct: 577 LDTELIFQLESYGIKKIIKKLPIENIFDLINLLSLYRPGPIQSGFINDFINRKNNIVKTY 636 Query: 663 YPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAK 722 +P K +L T+G+IL+QEQV+Q+ + + ++ + +M KK ++ Sbjct: 637 HPYSDCDFLQSKIILANTHGMILFQEQVLQLILFYTKCSNYDSEKIYASMIKKSKIKLKI 696 Query: 723 QRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEF 782 + +F K GI+ + + K F+++EKFA Y FNK+H+ +Y+ + YQT +LK++Y E+ Sbjct: 697 SKLIFINECNKLGIDKKTSSKFFNIIEKFASYSFNKTHAHSYSKIVYQTAYLKSNYLLEY 756 Query: 783 MAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVG 842 + + D + +++ + + PDIN +F + G I+YG + + Sbjct: 757 CLSNIYVDQLLGIDINNIINIIKSISVFFYKPDINLSDENFKIYKKG-ILYGFDIVTFID 815 Query: 843 EGPIEAIIEARNKGGYFRELFDLCARTDT-KKLNRRVLEKLIMSGAFDRLGPHRAALM 899 E I+ +I RNK Y+ C K ++++E LI SG FD +R L Sbjct: 816 ENFIDKVIYYRNKLFYYNNFEMFCKIFSVFKIKKKKIIENLIFSGFFDCFKINRVILF 873 >UniRef50_D2DXW4 DNA polymerase III alpha subunit (Fragment) n=1 Tax=uncultured Verrucomicrobia bacterium RepID=D2DXW4_9BACT Length = 1040 Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust. Identities = 311/1074 (28%), Positives = 523/1074 (48%), Gaps = 66/1074 (6%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 +V L S S + G + LV++AA L +PALA+ D + G + + G G++ I Sbjct: 13 YVELHARSACSFLRGASHPESLVREAARLKLPALAVCDRDGVYGSARVHRDGKEHGVRAI 72 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 VGA+ ++ + + + VL A TGY+NL +I++A RG P+ D L E + Sbjct: 73 VGAELTME------DQSVVPVLVATRTGYRNLCQMITRAKLRGTKLDAPV-RWDELGEFS 125 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRTGRPDEESYLHA 184 EGL+ L+G G V R+L + A F F+E+ R EE A Sbjct: 126 EGLVALTGDEEGPVRRALASKDRAAAMAATERLRAAFGGHNVFVEIQRHLHRGEERENDA 185 Query: 185 AVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEE 244 +LAEA GLP++ATN V + ++ L+ R Y+ +++++S Sbjct: 186 LADLAEATGLPLLATNGVLHATREERGVLDVFSCARHHTNLESGGRHLAYNAERHLKSPA 245 Query: 245 EMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTED-YLVKRAKEGLEER 303 M LFA+ PEA+ANT +A R ++ Y P+FP T D L R EG R Sbjct: 246 RMARLFANHPEAIANTERLADRLEFSLENLGYEFPKFPVSPGETMDSVLYHRTMEGARNR 305 Query: 304 LAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRG 363 + P+ ++L EL++I ++GF GYFLIV + + + +++ + + GRG Sbjct: 306 YPAM----------TPKVLDQLHKELELITRLGFSGYFLIVWDLVNFCRNDNILI-QGRG 354 Query: 364 SGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF-CMEKRDQVIEHVADMY 422 S A S V YAL IT DP+ +LLFERFL+ R + PD D+D ++R++VI+ V Y Sbjct: 355 SAANSAVCYALGITACDPVAGNLLFERFLSEGRKTWPDIDLDLPSGDRRERVIQEVYRRY 414 Query: 423 GRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLP 482 GR + T ++ +R++G+ L ++R S+L + QL Sbjct: 415 GRHGAAMTANVITFRGRSAMREIGKALNFAPDVLNRFSRLFG---NGDFPHTMDLSAQLR 471 Query: 483 E--IYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQ 540 E I K+ +++ RK+ G+ R+ G+H+GG++I +++ PL V Q Sbjct: 472 EAGIPPEHPRTKSAVELYRKIYGLPRHLGQHSGGMIICQGELSSVVPLENASMPGRVVAQ 531 Query: 541 FDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDML 600 +DK D G++K D LGL + + +LEM R + P+D+A +P+DD ++D++ Sbjct: 532 WDKDDCHDLGIIKVDLLGLGMMAAMQDSLEMCQAR-----DRPVDLATMPMDDPATYDLM 586 Query: 601 QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE 660 R++T FQ+ESR + RL+P F D++ VA+ RPGP+Q G++ ++ R G+E Sbjct: 587 CRADTIGTFQVESRAQMATLPRLRPQKFYDVVVEVAIIRPGPIQGGLLHPYLARHAGKE- 645 Query: 661 ISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM 720 DV++ H LKPVLE T G+ L+QEQ++++A V++ ++ A+ LRRA+ + +E Sbjct: 646 ----DVEYIHPDLKPVLERTLGVPLFQEQILKVAMVMADFSGSEAEDLRRALSFHRSQER 701 Query: 721 AKQRSV-FAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 779 Q V G + G++ E+ +I + FA YGF +SH+ ++AL++Y + W+K H Sbjct: 702 MDQVCVKLRAGMVRKGVDPEIVDRIVHATQSFAVYGFPESHAISFALIAYASCWMKVHRA 761 Query: 780 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 839 EF A ++ LV + R GL+ + + V DD + G+ ++ Sbjct: 762 PEFYAGLLNNQPMGFYSPATLVKDAKRRGLRTRAVSVLVSDWLCTVGDDDTLRLGLCYVR 821 Query: 840 GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 899 G+ + E I+ R + F L D RT K R L K+ GA + L HR A Sbjct: 822 GLTKEDGERIVAERQRKS-FESLMDFQLRTAVPKPALRTLAKI---GALNGLSEHRRA-- 875 Query: 900 NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 959 A+ E + + + A E + E P+ E+V D G Sbjct: 876 -------------AQWEVEIRREEDDLFAREIREEELPLKPMDPF-ERVRAD----YAGT 917 Query: 960 YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTL 1019 LT P L +R R D+ G+ ++ G+V+ + T +G + +L Sbjct: 918 SLTTGPHPMALVR-DRLPDLWRAADLPLAVNGQRLSIGGMVICRQRPGTAKG--VVFVSL 974 Query: 1020 DDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDI 1073 +D SG ++ + ++ + + +++ L + G++ G + + AR ++ + Sbjct: 975 EDESGVANAIVSSALFEQRRMCITEEQFLQIEGELQH--VEGVIHVKARTILPL 1026 >UniRef50_B8FIN6 DNA polymerase III, alpha subunit n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FIN6_DESAA Length = 880 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 299/888 (33%), Positives = 463/888 (52%), Gaps = 55/888 (6%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F HL VHS +S + G L KA G A A+TD + G V+F A G+ + Sbjct: 2 FAHLHVHSGFSFMYGTFLPEALAAKAKEAGFNAAALTDKNGVYGAVRFCAAAEKLGVHAV 61 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 +G ++ L +LA + GY NL LI+ A++ G P +L + Sbjct: 62 IGTQLTIEGR------DDLVLLAKSPKGYNNLCRLITLAHEYG-PRDQPACPEKFLALHS 114 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAF---YEEHF-PDRYFLELIRTGRPDEESY 181 ++ L+GGR G + + + + +E F + ++E+ G P + Sbjct: 115 RDIVCLTGGRDGRFFKLVEGADGTQYRRACGWVWRLQEIFGKENVYVEIQNAGTPYDARI 174 Query: 182 LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241 +H +AE G P+ ATNDV ++ D H V I + + S + Y++ Sbjct: 175 MHIMARVAEKAGAPLAATNDVVCLEPGDLPVHHALVDIQN--QVHHRACQARESREYYLK 232 Query: 242 SEEEMCELFADIP--EALANTVEIAKRCNVTVRLGEYFLPQFPTGD-MSTEDYLVKRAKE 298 S+EEM +L IP +AL NT IA C + LG+ P FP MS + L K Sbjct: 233 SQEEMAKL---IPYSQALENTGIIAHECQAMLPLGKSSPPVFPVPPGMSQDQALAKLCYR 289 Query: 299 GLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPV 358 L R P E + L +RLE EL I + GYFL+V E ++K + Sbjct: 290 SLARRFN---PLELDVL-------QRLEKELGHIRRRDLSGYFLLVKEIHSFAKARRI-R 338 Query: 359 GPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHV 418 G RGS AGSLV L + ++PLE LLFERFLN R+ MPD D+DF +RD++ E++ Sbjct: 339 GTVRGSAAGSLVL-HLLLGGVNPLEHRLLFERFLNNGRLDMPDVDMDFDSLRRDEIFEYL 397 Query: 419 ADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPD-PGMTLAKAFEA 477 + Y A + + T T A+ +R +GR LG+ Y +DR+++ +P + KA E Sbjct: 398 MEKYPNQA-AMVATVSTFRARGALRSLGRALGYSYEKIDRLTQFVPHFLRSHDIRKAIER 456 Query: 478 EPQL--PEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGK 535 P+L + + DE L+ +A K+ G+ N H GG+V+ P +I +++PL +G Sbjct: 457 MPELEGSPLLQEDE----LLWLAEKISGLPHNLSVHLGGMVLTPGEIFNWSPLQTSRKGI 512 Query: 536 HPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKK 595 PV QFDK DVE GLVK D LGLR + I + +E++ K+ + L + +PLDD Sbjct: 513 -PVVQFDKDDVEALGLVKLDILGLRMHSAIQFGVELLEKKGVR-----LCLDEVPLDDPA 566 Query: 596 SFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRK 655 +F ML+ +++ VFQ+ES G + L+ RLQP FED+IA ++LFRPGP+ MV+ ++ R+ Sbjct: 567 TFRMLRTTDSVGVFQVESPGQRQLLGRLQPRHFEDIIAEISLFRPGPMSGAMVEPYVLRR 626 Query: 656 HGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKK 715 + +E ++YP H L+P+L+ T+G++L+QEQ+++IA ++G G D +RR++ KK Sbjct: 627 NNKEPVTYP-----HPDLRPILKSTFGVVLFQEQILEIAHDIAGMPYGEGDRMRRSLSKK 681 Query: 716 KPEEMAKQ-RSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWL 774 P + ++ F +G K G + A FDLV F GYGF K+H+A++A ++YQ+ +L Sbjct: 682 APRAVFREMEEAFVKGCLKKGYDNPTAQAFFDLVASFMGYGFCKAHAASFAHITYQSAYL 741 Query: 775 KAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDIN-SGLYHFHVNDDGEIVY 833 K HYP F ++ A+ + +++E RMG+ +L P +N SG+ ++ ++G I Sbjct: 742 KTHYPLAFYFGILNAEHVGSYPHSVILNEARRMGIPVLQPHVNKSGVQ--YLEENGGIRI 799 Query: 834 GIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEK 881 + IK +G E II R K G F D R R LEK Sbjct: 800 PLIRIKNIGPKYCEKIILEREK-GLFLSADDFTKRVSLPAKARFSLEK 846 >UniRef50_Q1IJA3 DNA polymerase III, alpha subunit n=4 Tax=Bacteria RepID=Q1IJA3_ACIBL Length = 1070 Score = 421 bits (1083), Expect = e-116, Method: Compositional matrix adjust. Identities = 313/1103 (28%), Positives = 552/1103 (50%), Gaps = 79/1103 (7%) Query: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61 ++ +++ L +S +S + G + L+ +A L PA+A+ D + G +F+ A G Sbjct: 3 AQNQYIELHANSAFSFLRGASLPETLIFRAQQLEYPAMALMDGNGVYGSARFHLAAKPNG 62 Query: 62 IKPIVGADFNVQCDLLGDEL--------------THLTVLAANNTGYQNLTLLISKAYQR 107 ++ VG++ V+ LG+ + L +L + GYQNL ++++ R Sbjct: 63 VRAHVGSEIAVRD--LGERMAPAAWLPHQWPAEPVRLPLLCESREGYQNLCRMVTRLKMR 120 Query: 108 GYGAA-GPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDR 165 A G + D + E GL+ L+GG G + +L RG + V F + Sbjct: 121 EPSKAEGAAVMAD-VEEFARGLVCLTGGDEGPLASALARGGEPEGHKTVEHLVRMFGREN 179 Query: 166 YFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTL 225 F+EL R G ++E AAV +A + LP++ATN VR+ D + + ++ AI L Sbjct: 180 VFVELQRHGLREQEWRNQAAVRIARSLQLPILATNGVRYADEPEREIADLFTAIRHHVAL 239 Query: 226 DDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGD 285 D R + +Y+R EM LF D+PEA+ANT E+++R + Y P +PT D Sbjct: 240 KDAGRLLAQNSCRYLRPTAEMARLFRDLPEAVANTWELSQRLTFELDDLGYQFPIYPTPD 299 Query: 286 -MSTEDYLVKRAKEGLEERL-AFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLI 343 S + +L KR +EG+ +R A PD R ++ ++ EL +I ++G GYFLI Sbjct: 300 GESMDSFLEKRVQEGVIKRYGAKNEPDLYARAQK------QVARELALIKKLGLAGYFLI 353 Query: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 V + I++ + N + V GRGS A S V YAL+IT +DP+ +LLFERFL+ R PD D Sbjct: 354 VWDIIRFCQQNDILV-QGRGSAANSAVCYALEITAVDPVGMELLFERFLSEARGEWPDID 412 Query: 404 VDF-CMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL 462 +D +KR+Q I++V YG + T K+ R+VG+ LG +++++KL Sbjct: 413 LDLPSGDKREQAIQYVYTRYGHLGAAMTANVITYRGKSAAREVGKALGFDVETLNKLTKL 472 Query: 463 IPP----DPGMTLAKAFEAEPQLPEIYEADE-EVKALIDMARKLEGVTRNAGKHAGGVVI 517 + P TL FE+ +EA + +D+ +++ + R+ G+H+GG+VI Sbjct: 473 VSTWEWRGPNDTLENQFESAG-----FEAKHPHIAKYLDLCSRIQDLPRHLGQHSGGMVI 527 Query: 518 APTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRA 577 ++ P+ V Q+DK D ++K D LGL + +I ++++ + Sbjct: 528 CQGQLDSVVPIEPASMPGRSVVQWDKDDCADMHIIKVDLLGLGMMAVIKDCVDLVPRHYG 587 Query: 578 KNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVAL 637 P+D+A +P +D + LQ+++T +FQ+ESR + R P F D++ VA+ Sbjct: 588 V----PVDLAQLPQNDGDVYRTLQKADTVGMFQVESRAQMASLPRNYPTRFYDIVVQVAI 643 Query: 638 FRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVL 697 RPGP+ M + ++ R+ +EE++Y H L+PVL+ T G+ L+QEQ++++A ++ Sbjct: 644 IRPGPIVGNMANPYMRRRQKKEEVTY-----YHPLLEPVLKRTLGVPLFQEQLLRMAMIV 698 Query: 698 SGYTLGGADMLRRAMGKKKPEEMAKQRSV-FAEGAEKNGINAELAMKIFDLVEKFAGYGF 756 + ++ A+ LRRA+G ++ + ++ V G +NG + + +I + FA YGF Sbjct: 699 ANFSGTEAEELRRALGMRRSTQRMRELGVKLRAGMTENGFDPKTQEEIIQSISSFALYGF 758 Query: 757 NKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDI 816 +SH+A++AL++Y + + K HY A F AA++ LV + R GL++LP D+ Sbjct: 759 PESHAASFALIAYASAYFKVHYLAAFTAAILNNQPMGFYSPAVLVKDAQRHGLRVLPVDV 818 Query: 817 NSGLYHF---HVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKK 873 ++ H D+ ++ G+ ++G+ + E ++++R G F DL R Sbjct: 819 QRSVWDCTVEHAGDERKLRLGLRYVRGLRQETAEILVKSRENHGPFASSEDLGRRVPL-- 876 Query: 874 LNRRVLEKLIMSGAFDRLG--PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEP 931 LNR+ L L GA + +G HR DAL ++ ++ G L + Sbjct: 877 LNRKELVALAQIGALNWVGGTAHRR-------DALWQVERVSRRP--------GPLLQSA 921 Query: 932 EQIEQSYASCQ-PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTER 990 E+ E Q W E++V D GL + HP+ Y +E + + + + E Sbjct: 922 EEEEDVSPLAQMNWEERLVADF--NGTGLTVGKHPMT-YHRERLAKMRVLSAEQLQVAED 978 Query: 991 GKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIV 1050 G+ + AG V+A + T +G +++D +G ++ ++ + ++ +R L+V Sbjct: 979 GRQVRIAGCVIARQRPGTAKG--FVFLSIEDETGIANAIISPQLYEQNRVVVFTERFLVV 1036 Query: 1051 SGQVSFDDFSGGLKMTAREVMDI 1073 G++ D G + + A+ V + Sbjct: 1037 EGKLQNQD--GVIHVRAQRVQSL 1057 >UniRef50_A7BC77 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BC77_9ACTO Length = 1094 Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust. Identities = 340/1146 (29%), Positives = 525/1146 (45%), Gaps = 140/1146 (12%) Query: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61 +E R+ L HS ++ +DG + A +V++AA LG+ ALAI D + V+ A AG Sbjct: 3 TERRYAELHAHSAFTFLDGTDEPARMVEEAARLGLDALAILDVDGMYSTVQTTMAARTAG 62 Query: 62 IKPIVGADFNVQCDLLG------------------DELTHLTVLAANNTGYQNLTLLISK 103 + + GA+ + D L D L ++AA+ TGY +L +S Sbjct: 63 LPIVYGAELTLAPDALRGIVPGSSAPGWGLAPGAEDPGMRLPIVAASPTGYAHLVGAMSA 122 Query: 104 AYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP 163 G P D L E L++L+GGR G + R+L G +A + + F Sbjct: 123 RALSEPGQRNPRHDLVNLSEAGGELVVLTGGRRGPLMRALRAGGTAPARRVLDGLVDAFG 182 Query: 164 DRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGF 223 L + R DE+ ELA A G +VAT+ R S +I A G Sbjct: 183 CDQVLVEWQAARGDEDEVGDVLAELARASGTRLVATSGARMSSPSKQALGDILTATRLGS 242 Query: 224 TLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT 283 +L++ + + + ++RS EM L P+AL N E+A C +RL LP+ Sbjct: 243 SLNEAEAHLG-AHRSFLRSPAEMARLHGAHPQALDNACEVAAACAFDLRLVAPRLPRTQV 301 Query: 284 GDMSTED-YLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFL 342 D T D +L EG R P E +E EL VI ++GF GYFL Sbjct: 302 PDGHTPDSWLAHCTYEGASVRYG--------SRAHHPRAWETIEHELGVIERLGFAGYFL 353 Query: 343 IVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDF 402 IV + + + NG+ + GRGS A S V Y L IT +D + +LLFERFL+ R PD Sbjct: 354 IVKDIVDFCARNGI-LCQGRGSAANSAVCYCLGITAVDAVRHNLLFERFLSDARSGPPDI 412 Query: 403 DVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL 462 DVD +R++VI++V D +GRD +Q+ T ++ IRDV R LG+P G S Sbjct: 413 DVDIEACRREEVIQYVYDTFGRDRAAQVANVITYRPRSAIRDVARALGYPAGTATAWS-- 470 Query: 463 IPPDPGMTLAKAFEAEPQLPEIYEADEEVKALI-DMARKLEGVTRNAGKHAGGVVIAPTK 521 + EV L+ D A+ L + R+ G H+GG+V+ Sbjct: 471 -----------------------QGRGEVPPLVGDAAQALARLPRHMGIHSGGMVLTDQP 507 Query: 522 ITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGE 581 ++ P+ V Q+DK D AGLVKFD L L LT + A + + A+ GE Sbjct: 508 VSRICPVGWAAMPGRTVLQWDKEDCADAGLVKFDLLSLGMLTALRVAFDELRAGGARAGE 567 Query: 582 P------------------PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRL 623 PL + +P +D + +D+L ++T VFQ+ESR + + RL Sbjct: 568 ASNQLRGWAPRVVEGREGQPLGLHTLPEEDPRVYDLLCAADTVGVFQVESRAQMNTLPRL 627 Query: 624 QPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGI 683 +P CF D++ VAL RPGP+Q V+ ++ R+ GRE+++Y H+ L+P L T G+ Sbjct: 628 KPRCFYDIVVEVALIRPGPIQGRSVNPYLRRRSGREKVTY-----LHQLLEPALRQTLGV 682 Query: 684 ILYQEQVMQIAQVLSGYTLGGADMLRRAMG-KKKPEEMAKQRSVFAEGAEKNGINAELAM 742 L+QEQ+M+IA+ +G + AD LRRAMG K+ PE M + G E+ GI+A Sbjct: 683 PLFQEQLMRIARDAAGLSGARADQLRRAMGAKRSPERMEALKGDLMAGMEERGIDAPTRE 742 Query: 743 KIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVD 802 +IF+ ++ FA +GF +SHS ++A + Y + WLK H P F AA++ + LV Sbjct: 743 RIFEQLKGFADFGFPESHSFSFAHIVYASSWLKVHAPEHFYAAILASQPMGFYSPATLVQ 802 Query: 803 ECWRMGLKILPPDINSGLYHFHVNDDGE------------------------------IV 832 + R G++++ P +N L V G+ + Sbjct: 803 DARRHGVRVVGPSVNDSLVDASVQRVGDDEAGESYNPGRPEALPSRGTVALDVDRELAVR 862 Query: 833 YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892 G+ ++G+G E I+EAR +G F DL R ++ +EKL M+GA + LG Sbjct: 863 IGLSQVRGLG-AVAERIVEARRQGA-FTSQADLARRA---HVSASAMEKLAMAGALECLG 917 Query: 893 PHRAALMNSLGDALKAADQHAKAEA-IGQADMF----GVLAEEPEQIEQSYASCQPWPEQ 947 R + AA A+ +A GQ F V A PE S E Sbjct: 918 VGRR-------EGAWAAGALAQPQARAGQWQPFLPGTEVGARVPELPSLS--------EA 962 Query: 948 VVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMV 1007 + + + GL HP + + V +R ++ G+++ AG+V + Sbjct: 963 ERMRSDVASTGLTPGRHPFSYVRGSLPASV--LRAGELGQHLTGRIVDIAGVVTHRQRPH 1020 Query: 1008 TKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTA 1067 T G I +L+D +G + V + A K++++ + L+V G + + D G + + A Sbjct: 1021 T--GGGITFLSLEDETGLVNVSVSVGAWKKFRRVCLESSALLVRGTLEWGD--GAISVQA 1076 Query: 1068 REVMDI 1073 + I Sbjct: 1077 FRIASI 1082 >UniRef50_B3PMZ7 DNA polymerase III subunit alpha n=1 Tax=Mycoplasma arthritidis 158L3-1 RepID=B3PMZ7_MYCA5 Length = 999 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 236/654 (36%), Positives = 367/654 (56%), Gaps = 29/654 (4%) Query: 257 LANTVEIAKRCNVTVRLGEYFLPQFPTG-DMSTEDYLVKRAKEGLEERLAFLFPDEEERL 315 + T E+ + C + +Y LP+F ++ + YL K + +R E+ Sbjct: 213 ITKTNELMQGCYFELPKNDYILPKFQNELNLDSTKYLQTLIKNNIVKRF--------EKS 264 Query: 316 KRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALK 375 EY RL E+ +I ++ F YFLI+ +++ W+K N + +GPGRGS AGSLV+Y L Sbjct: 265 AWNDEYKLRLLHEMSIIEKLKFEDYFLIIQDWVNWAKKNKIAIGPGRGSAAGSLVSYILG 324 Query: 376 ITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGT 435 IT++DPL++ L+FERFLNPERVSMPD D+D +R +VIE++ YG V+ I+TF + Sbjct: 325 ITNVDPLKYGLIFERFLNPERVSMPDIDIDVQDNRRQEVIEYLNKKYGSSQVANIVTFAS 384 Query: 436 MAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQ----LPEIYEADEEV 491 + K+ IRDV R ++ +SKLI G +L + +++ + L + + D Sbjct: 385 LGKKSAIRDVMRTYDVSPAMINEVSKLIGLKEG-SLLEEYQSNKKFALALNSLNKEDANF 443 Query: 492 KA-LIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAG 550 +++ A +LEG R G HA GV+IAP I P Y E+G TQ +E+ G Sbjct: 444 STKILNYASQLEGFYRQTGTHAAGVIIAPKPINQIIPTYKIEDGIQQ-TQVSMEYLEHFG 502 Query: 551 LVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQ 610 L+K D LGL+TLT I L I ++ KN + LD+A I +D+ +FD+L T +FQ Sbjct: 503 LLKMDILGLKTLTTIQEVLLQI--KKTKNLD--LDLAKIKYEDQLTFDLLNTGSTVGIFQ 558 Query: 611 LESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQH 670 LES GM +K++ D F D++A ++L+RPGP+ + V + RK+ E I P + + Sbjct: 559 LESFGMTKALKQIHVDSFNDIVATISLYRPGPMDNLKV--YAKRKNAHEPI--PSISKAY 614 Query: 671 ESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEG 730 + +++ TYGII+YQEQ+MQI Q ++ + AD +RR + KKK +EM ++ F Sbjct: 615 DE---IVKGTYGIIIYQEQIMQIVQAVANLSFSQADNIRRIISKKKVDEMHAVKTNFVNS 671 Query: 731 AEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTAD 790 A KNG + + A+ IF+L+ KFA YGFNKSH+ +YA++SYQ +LKAHYP EF +A++++ Sbjct: 672 AIKNGYSEKDALNIFELISKFADYGFNKSHAVSYAMISYQMAYLKAHYPLEFYSAIISSA 731 Query: 791 MDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAII 850 E + E +G++I+ PDIN + + + IV + IKG+G + I+ Sbjct: 732 HGAHETIARFSAEAKSLGIEIISPDINLSNQNATILNKA-IVLPLNMIKGIGPETVRLIL 790 Query: 851 EARNKGGYFRELFDL-CARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLG 903 E R G +R L K LE LI + A ++A ++N + Sbjct: 791 EDRKINGPYRNFLHLFVCLMHIKNFGLANLEILIKANALRTFNINQATMLNEIA 844 >UniRef50_Q9CI70 DNA polymerase III subunit alpha n=4 Tax=Lactococcus lactis RepID=DPO3A_LACLA Length = 1060 Score = 418 bits (1075), Expect = e-115, Method: Compositional matrix adjust. Identities = 313/1061 (29%), Positives = 518/1061 (48%), Gaps = 99/1061 (9%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F L ++YS +D + K ++ A LG + I D NL +F ++PI Sbjct: 2 FAPLNTKTEYSFLDSVVKVDDYLETAHRLGYQTVGICDVGNLHAAFRFVRKAQKFNLQPI 61 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 + + N + L + +A + GY+NL L IS + G I + Sbjct: 62 ISIELNFEWRGLP---IAFSFIAKDTEGYKNL-LRISTLHNYGRRQFSDIQNH------L 111 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 185 G+ L+ G + S L S++ DE ++ Sbjct: 112 SGIALIIPETYGSL--SELTELSSVADEAFIGIDQ------------------------L 145 Query: 186 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 245 + LP + +R+++ +D + I A+ DG + D+ S + R E Sbjct: 146 TDKGAKFNLPTLPFPAIRYLNFADNEILAILHAVRDGVSFDESLTIS--SNELLQRPEAY 203 Query: 246 MCELFADIPEALAN----TVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKEGLE 301 P+AL N T +IA + + + L P+F + E +L + A GL Sbjct: 204 ETYFLKYFPQALKNLSALTAKIAYQFDEKLEL-----PRFDKKRQAVE-HLREEATLGLS 257 Query: 302 ERLA---FLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPV 358 RL L L+ Y ERLE EL VI+QMGF YFLIV + ++++++ + Sbjct: 258 ARLEEKNLLTEVSSVNLQDLSVYQERLEKELSVIHQMGFDDYFLIVADLLRYAREQDIYC 317 Query: 359 GPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHV 418 G GRGS AGSLVAY L IT +DP++ +L FERFLNPERV+MPD D+D ++R +++ ++ Sbjct: 318 GMGRGSAAGSLVAYVLGITQVDPVQHNLFFERFLNPERVAMPDIDIDMPDDRRAELLAYM 377 Query: 419 ADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAE 478 + YG D V+QI+TF T+ + +RDVG+ G + +++++ G TLA +E Sbjct: 378 KNRYGSDHVAQIVTFSTLGKRQALRDVGKAFGMTEAELSNLTRMLVRRFG-TLADEYENN 436 Query: 479 PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538 + + ++K + ++AR++EG+ R HA GVV++ + ++ L E+ + Sbjct: 437 QRFKAEVLKNGKLKRIYEVARRIEGMPRQTSTHASGVVLSEESLVNYVSLKPSED--LAL 494 Query: 539 TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598 TQ++ DVE GL+K DFLGLR LTII+ +++ KRR K PL I L+D+ + Sbjct: 495 TQYEAPDVEAIGLLKIDFLGLRNLTIISRLRDLV-KRRQKIDIDPL---KINLEDEDTLA 550 Query: 599 MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658 + + T +FQ E+ M+ ++ L P F+D++ ++FRPGP S + F+ R+HG+ Sbjct: 551 LFRAGNTMGIFQFENPQMRRFLRNLAPSKFDDIVDATSIFRPGP--SQFIPQFVARRHGK 608 Query: 659 EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718 E + D +S+ +L+PTYGI++YQEQ+MQ+AQ +G++LG AD+LRRA+ KKK Sbjct: 609 EIVPTVD-----DSISEILKPTYGIMIYQEQIMQVAQAFAGFSLGKADLLRRAISKKKGS 663 Query: 719 EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778 E+ K R F + A NG + E A +I+DL+E+FA YGFN+SH AY +++Q + KAH+ Sbjct: 664 ELEKLREDFLDSASHNGHSKEKAEEIYDLIERFANYGFNRSHGFAYGALAFQIAYFKAHF 723 Query: 779 PAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVND---DGEIVYGI 835 P EF + D +V+ L + G +I P IN + D + +I G+ Sbjct: 724 PDEFYEIQLR---DRKREVMIL--DALENGFEIEKPSINL----MKIGDFVKNKKIRLGL 774 Query: 836 GAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHR 895 ++G+ + I+E + +++L D + + + LI GAFD +R Sbjct: 775 AHVQGISRDLAKWIVENQP----YKDLADFVEKLPNNFHKKENILPLIQIGAFDYADSNR 830 Query: 896 AALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERE 955 L +L D + + ++ I A G A Y + + E D E+ Sbjct: 831 GKLAYNLADHANLLNYY--SDDIFMASSGGGFA---------YHEAEDYSETEKYDFEKN 879 Query: 956 TLGLYLTGHPINQYLKEIERYVGGVR-LKDMHPTERGKVITAAGLVVAARVMVTKRGNRI 1014 LG+ +T HP+ + R+ G L + R ++ + R TK G + Sbjct: 880 LLGIGVTPHPLQNLAR---RFEGNFTPLAQLVKNRRMTILVEINYI---RTHRTKTGQTM 933 Query: 1015 GICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVS 1055 T+ D +V LF + ++ LE+ + ++SG+V+ Sbjct: 934 AFLTVSDSRENFDVTLFPEIYRQFSGELEQGKFYLISGKVT 974 >UniRef50_Q5XBV1 DNA polymerase III subunit alpha n=99 Tax=Streptococcus RepID=DPO3A_STRP6 Length = 1036 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 343/1127 (30%), Positives = 535/1127 (47%), Gaps = 135/1127 (11%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F L + YS +D L ++A G + I D NL G F G++P+ Sbjct: 2 FAQLDTKTVYSFMDSLIDLNHYFERAKQFGYHTIGIMDKDNLYGAYHFIKGCQKNGLQPV 61 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 +G + + L + L ++A N GY L L IS A G + D+L + Sbjct: 62 LGLEVEI---LYQERQVLLNLIAQNTQGYHQL-LKISTAKMSGK------LHMDYLCQHL 111 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 185 EG+ ++ + G S D V P Y+ I + + S++ + Sbjct: 112 EGIAVIIPSK----GWS---------DTLVV------PFDYY---IGVDQYTDLSHMDSK 149 Query: 186 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 245 +L R VR+ D + + AI D +L + P S Q+ ++ Sbjct: 150 RQLIPLRT--------VRYFAQDDMETLHMLHAIRDNLSL--AETPVVESDQELADCQQL 199 Query: 246 MCELFADIPEALANTVEIAKRCNVTVRLGEYF-------LPQFPTGDMSTEDYLVKRAKE 298 P+AL N ++ G Y+ LP F D S + L + + Sbjct: 200 TTFYQTHCPQALQNLEDLVS--------GIYYDFDTNLKLPHF-NRDKSAKQELQELTEA 250 Query: 299 GLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPV 358 GL+E+ L + P Y RL EL +I+ MGF YFLIV + +++ + G + Sbjct: 251 GLKEK----------GLWKEP-YQSRLLHELIIISDMGFDDYFLIVWDLLRFGRSKGYYM 299 Query: 359 GPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHV 418 G GRGS AGSLVAYAL IT +DP++ DLLFERFLN ER SMPD D+D R + + +V Sbjct: 300 GMGRGSAAGSLVAYALNITGIDPVQHDLLFERFLNKERYSMPDIDIDLPDIYRSEFLRYV 359 Query: 419 ADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHP-YGFVDRISKLIPPDPGMTLAKAFEA 477 + YG D +QI+TF T K IRDV + G P Y + K+ D +LA +E Sbjct: 360 RNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELTNLTKKIGFKD---SLATVYEK 416 Query: 478 EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHP 537 ++ + E + +A+++EG R HA G+V++ +T+ PL ++ Sbjct: 417 SISFRQVINSRTEFQKAFAIAKRIEGNPRQTSIHAAGIVMSDDTLTNHIPLKSGDDMM-- 474 Query: 538 VTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSF 597 +TQ+D VE GL+K DFLGLR LT + + + ++ AK+ +DIAAI L+D ++ Sbjct: 475 ITQYDAHAVEANGLLKMDFLGLRNLTFV----QKMQEKVAKDYGCQIDIAAIDLEDPQTL 530 Query: 598 DMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHG 657 + + +T +FQ E G +L+KR++P FE+++A +L RPG S NFI R+ G Sbjct: 531 ALFAKGDTKGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGA--SDYTTNFIKRREG 588 Query: 658 REEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKP 717 +E+I D + P+LEPTYGI+LYQEQVMQIAQV +G+TLG AD+LRRAM KK Sbjct: 589 QEKIDLID-----PVIAPILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNL 643 Query: 718 EEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAH 777 +EM K F A+ G E A +F +EKFAGYGFN+SH+ AY+ +++Q + KAH Sbjct: 644 QEMQKMEEDFIASAKHLGRAEETARGLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAH 703 Query: 778 YPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGA 837 YPA F +M + + + ++ INS Y + + +I G+ Sbjct: 704 YPAVFYDIMMNYSSSD------YITDALESDFQVAQVTINSIPYTDKI-EASKIYMGLKN 756 Query: 838 IKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAA 897 IKG+ IIE R F + D RT K + LE LI G FD P+R Sbjct: 757 IKGLPRDFAYWIIEQRP----FNSVEDFLTRTPEKYQKKVFLEPLIKIGLFDCFEPNRKK 812 Query: 898 LMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETL 957 ++++L L ++ G L + S+ Q + E+E + Sbjct: 813 ILDNLDGLLVFVNE------------LGSLFSDS---SFSWVDTQDYSATEKYSLEQEVV 857 Query: 958 GLYLTGHP-INQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTK-RGNRIG 1015 G+ ++ HP I+ K I+ + +L + +E +I + + R++ TK G ++ Sbjct: 858 GVGMSKHPLIDIAEKSIQTFTPISQL--VKESEAVVLIQ----IDSIRIIRTKTSGQQMA 911 Query: 1016 ICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREV-MDID 1074 +++D +L+V LF Y+ L++ + G++ D L+M ++V M I Sbjct: 912 FLSVNDTKKKLDVTLFPQEYAIYKDQLKEGEFYYLKGRIKERDHR--LQMVCQQVQMAIS 969 Query: 1075 EAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQR 1121 +KY + + + Q D Q+ L GT PV ++YQ+ Sbjct: 970 ---QKY----WLLVENHQFDSQISEILGAF-----PGTTPVVIHYQK 1004 >UniRef50_B8HIY5 DNA polymerase III, alpha subunit n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HIY5_ARTCA Length = 1401 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 354/1181 (29%), Positives = 528/1181 (44%), Gaps = 243/1181 (20%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL H+++S +DGLA+ + K+AA LG A+AITD +L G +F A AGIKPI Sbjct: 3 FVHLHNHTEHSSLDGLARIKSVAKRAAELGQTAMAITDHGSLAGAWRFTKACKAAGIKPI 62 Query: 66 VGAD--------FNVQCDLL--------------GD----ELTHLTVLAANNTGYQNLTL 99 +G + F +++ GD HLT+LA N G++NL Sbjct: 63 IGIEIYMSIGDRFERNSEIVDRNDDTTADADDGKGDTKEKRYEHLTLLARNEQGWKNLLA 122 Query: 100 LISKAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNS----------- 148 L +KA + + P ID L E EGLI+LSG G V L R + Sbjct: 123 LHNKAEESYW--YKPRIDYKLLKEHGEGLIILSGCLAGPVAGPLSRAAATKTASEQAAAG 180 Query: 149 ---------------------ALVDECVAFYEEHFPD-----------RYFLELIRTGRP 176 A + + F E + +LE++ Sbjct: 181 ALAAREANEEDEASKLDAEAQASLAKSAEFAAEARKNLDTLIDCVGKENVYLEIMYHSIE 240 Query: 177 DEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSP 236 E+S L +L+ +P+V TND + + D HE +A+ LDDP R + Sbjct: 241 AEQSVLKPIGQLSREYEIPMVVTNDCHYEEEGDAHHHEGFLAVGSKKGLDDPARFKFNGS 300 Query: 237 QQYMRSEEEMCEL---FADIPEALANTVEIAKRCNVTV------RLGEYFLPQFPTGDMS 287 Y++SE EM ++ +A A T IA RC+ V RL +Y LP+ G Sbjct: 301 GYYVKSEAEMLDIKPGSKSWADACAMTQVIADRCDDQVIPTPHQRLPKYPLPE---GFTD 357 Query: 288 TEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347 + YL + KEG R E +RL+TEL +I MGFP YFLI+ + Sbjct: 358 SNVYLKQLVKEGAIARYGSPLSQE---------VKDRLKTELDIIKDMGFPDYFLIMWDV 408 Query: 348 IQWSKDNG--------------VPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLN 393 I W + + + VGPGRGS AGS V+Y L I LDPL +LLFERFL Sbjct: 409 INWCRSDAPIEFDNPDAPRKKPILVGPGRGSAAGSAVSYCLTIVGLDPLYNNLLFERFLE 468 Query: 394 PERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPY 453 P R MPD DVDF +RD+V ++ +G+ V++I TFG +KA I+D R+L P Sbjct: 469 PGRAGMPDIDVDFEKGRRDEVFAYLGYRWGKGNVARIGTFGVALSKAAIKDAARIL-KPS 527 Query: 454 G-----------------------------------------FVDRISKLIPP------- 465 G +++S L+P Sbjct: 528 GPSEEIKAQAKEFFAAGDRGKGASLLREAEKAATERATQIMRLGNKMSDLVPASGEKAYD 587 Query: 466 -----DPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPT 520 DP +AF + EA ++ +++MAR EGV +N HA G V++P Sbjct: 588 FDQLADPKDQAGQAFR-----DLVEEAGQDALDILEMARSFEGVIKNESIHACGFVVSPE 642 Query: 521 KITDFAPLYCDEEGKHP------VTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMI-- 572 + D PL V +D +VE G +K D LGL L I+ ALE I Sbjct: 643 PLDDLVPLRWASHAADADPAAPRVICWDGPEVEDYGFLKMDILGLMNLDIVATALENIEM 702 Query: 573 --NKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFED 630 ++ + P D P D +F ++ T VFQ+ES GM + + + P+ D Sbjct: 703 TTGEKLTMDDVPHPDTQGDPKVDA-AFALIAAGNTGGVFQMESAGMVKIAQDVVPESLTD 761 Query: 631 MIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDV---QWQHESLKPVLEPTYGIILYQ 687 + A+VALFRPGPL + + D + RK+G EE+ Y + + E + VL TYG+ ++Q Sbjct: 762 ISAIVALFRPGPLAAKVPDRYAARKNGLEEVDYNQFTADKTEQEWIAKVLGDTYGVFVFQ 821 Query: 688 EQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAM----- 742 E +M++ V+SG+ +LR+A+GKK ++MA+ + A GAE+ + + AM Sbjct: 822 ESLMRLGTVISGFDASQRSVLRKAVGKKDAKKMAEVGEMLAAGAEQEFFDEDGAMISPKF 881 Query: 743 ------KIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMT-ADMDNTE 795 +F+L++ A Y FN SHSAAYA +++ T +LKA++P E+ AA++ AD D+ Sbjct: 882 SPKTAAHMFELMKGSASYLFNASHSAAYAQLAFVTAYLKANWPVEYAAAILAIADKDDKR 941 Query: 796 KVVGLVDECWRM---GLKILPPDINSGLYHFH-VNDDGEIVYGIGAIKGVGEGPIEAIIE 851 ++ W + G+ +L PDIN L VN G + G+ +K VG I+ Sbjct: 942 -----MNAFWSLKTDGITVLAPDINLSLARTAPVN--GSVQMGLAEVKEVGVAG-HYIVA 993 Query: 852 ARNKGGYFRELFDLCAR--------TDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLG 903 R K G F+ L D+ R + KL ++ LI +GA D GP LM Sbjct: 994 ERQKNGPFKNLHDVLTRVTVPGKNGAEPTKLPVGAIQGLIEAGALDSFGPRLGLLMT--- 1050 Query: 904 DALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTG 963 L+AA + ++ + AE W + +R+ LG+ L Sbjct: 1051 --LRAAH---------KTELLPIDAE--------------WSDVEESTRQRQRLGVSLGT 1085 Query: 964 HPINQYLKEIERYVG--GVRLKDMH--PTERGKVITAAGLV 1000 HP+ EI + G G + +H E G+ + G++ Sbjct: 1086 HPLQSLKDEILAWEGPAGGKATPLHRIADENGEAVLTVGVI 1126 >UniRef50_Q6F0N2 DNA polymerase III alpha subunit n=2 Tax=Mollicutes RepID=Q6F0N2_MESFL Length = 992 Score = 414 bits (1065), Expect = e-114, Method: Compositional matrix adjust. Identities = 306/1083 (28%), Positives = 520/1083 (48%), Gaps = 119/1083 (10%) Query: 9 LRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA 68 + V S Y+ + L K + A G L + + G+ +F+ IKPI+G Sbjct: 8 INVRSVYNFQESLIKINDYISFAKNEGFKHLFYCENKTMYGVAEFFQKALKENIKPIIGL 67 Query: 69 DFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEGL 128 L D+ +T++ N Y+ T +IS LNE Sbjct: 68 SIE-----LNDKKI-ITLIPKNKAAYK-YTCIISS-------------------NLNED- 100 Query: 129 ILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVEL 188 + L+ + D+ + + NS L+ V E F + E+I T D++ + Sbjct: 101 VKLNDEEIFDLLKKYVDNNSFLITN-VDNKNEFFNNA---EIINTN--DKKIFF------ 148 Query: 189 AEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCE 248 N +R+I + D ++ A+ + T + + Y + +E+ + Sbjct: 149 -----------NPIRYISDDEQDLYKGLFALKNNLTSTEANKI--YKINEAYPYADEISQ 195 Query: 249 LFADIPEALANTVEIAKRCNVTVRLG-----EYFLPQFPTGD-MSTEDYLVKRAKEGLEE 302 +F N+ EI K + V L E + +F D M + YL ++ GL+ Sbjct: 196 IFP-------NSEEIGKYISDNVNLNIFEDNEKHMAKFIAPDNMPSFSYLKQKCLAGLQH 248 Query: 303 RLAFLFPDEEERLKRRP---EYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVG 359 + +K P EY +RL EL +I + GF YFLIV +++ +++ N + VG Sbjct: 249 YF--------KNVKHEPIKEEYIQRLNHELSIIEKTGFADYFLIVHDYVSFARRNDIIVG 300 Query: 360 PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVA 419 PGRGS AGSLV++ L+IT +DP+E++LLFERFLNPER++MPD D+DF +RD+VIE++ Sbjct: 301 PGRGSAAGSLVSFLLRITTIDPIEYNLLFERFLNPERITMPDIDIDFQDNRRDEVIEYLF 360 Query: 420 DMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEP 479 + YG+ V+ I+T+ T+A K+ RD R+ V+ I+K + D ++ + + + Sbjct: 361 EKYGKYNVATIVTYQTIAFKSAFRDACRIYQIDMNLVNLITKSL-TDDYLSFDEILKTQK 419 Query: 480 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 539 + E Y E K + + KL G R G HA G++I+ T + + P+ G + T Sbjct: 420 LIKE-YSEKAEFKNIFKLVEKLIGCPRQTGTHAAGIIISDTDLRNVLPIRQGLNGIYQ-T 477 Query: 540 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 599 QFD + +E GL+K D LGLR LT + L+++ KN ++ I L+D K+F + Sbjct: 478 QFDMNYLEDIGLIKMDLLGLRNLTTLKEILDLV----KKNHNEDFTLSKIDLNDAKTFKI 533 Query: 600 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 659 L+ TT +FQLES+GM +LI ++ + D+ A +L+RPGP + M+ ++I+ K+ R Sbjct: 534 LREGNTTGIFQLESQGMTNLIIDMKVNNINDISAASSLYRPGPQE--MIPDYINNKNNRR 591 Query: 660 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 719 V +SL +L PTYG+I+YQEQVMQI Q++ ++LG AD++RRAMGKK+ E Sbjct: 592 ------VSLIDKSLANILLPTYGVIVYQEQVMQILQLVGNFSLGKADIVRRAMGKKQIEY 645 Query: 720 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 779 M + + F A N + E A+ I++ +E+FA YGFNKSH+ AY+ + Y W KAHYP Sbjct: 646 MMEVKDEFINNAMANNYSNEKAVAIWNWIEQFAKYGFNKSHAIAYSYIGYWLAWFKAHYP 705 Query: 780 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH--------FHVNDDGEI 831 AEF A++ + N K + E + G++++ P + + + + + I Sbjct: 706 AEFYTALLNGVVGNPSKTSRYIKEVKQFGIEVIKPSVKPAISKKLEDTIKLNYTSSENRI 765 Query: 832 VYGIGAIKGVGEGPIEAIIEARNK-GGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDR 890 + IKG+G I + + + F +L + K LN L +G+FD Sbjct: 766 YMPLTLIKGIGRDFIATLNKVYEEHSNLFDDLNNFFFYMKNKGLNESNYTLLAKAGSFDC 825 Query: 891 LGPHRAALMNSLGDALKAADQHAKAEAIGQADM-FGVLAEEPEQIEQSYASCQPWPEQVV 949 G +++ ++ A + I A M F +Q + + E+V Sbjct: 826 FGYNKSTMV-------------ANKDFIFSAMMAFNENISLDKQTKIENLFEEELNEEVE 872 Query: 950 LDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTK 1009 E+E G Y++ +P+ + E + +K E + G + RV+ K Sbjct: 873 SSYEKEVFGFYISSNPLTKLKNENAFFKPNDIIK---LVENMNDVNIIGQISGIRVIKDK 929 Query: 1010 RGNRIGICTLDDRSGRLEVMLFTDALD--KYQQLLEKDRILIVSGQVSFDDFSGGLKMTA 1067 + T+ D + +++ +F+ + +Y + K+ +L + Q + +G L+ Sbjct: 930 NQKNMAFVTVFDDTESIDLTVFSSNFENLQYDLVTNKNYVLKIRTQKYKNKITGILESIV 989 Query: 1068 REV 1070 + V Sbjct: 990 KPV 992 >UniRef50_Q6A780 Error-prone DNA polymerase n=9 Tax=Actinobacteria (class) RepID=DNAE2_PROAC Length = 1134 Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust. Identities = 323/1105 (29%), Positives = 512/1105 (46%), Gaps = 117/1105 (10%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 + L HS YS +DG + LV +A LG+ LA+TD L G+V+ A G+ I Sbjct: 57 YAELHCHSSYSFLDGASNPEDLVIRAVELGLSGLALTDHDGLYGVVRMAEAAEACGLSTI 116 Query: 66 VGADFNV-----QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG-PIIDRD 119 +G++ ++ Q + +HL VLA GY+ L ++ AY G G P+ D D Sbjct: 117 IGSELSIGVPEPQNGVADPVGSHLLVLANGPEGYRRLAEALTDAYLVEGGRKGRPVHDLD 176 Query: 120 WLIELNEG-LILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDE 178 L E+ +G +L+G R G V + L++G E + D +EL P + Sbjct: 177 HLAEVADGHWTVLTGCRKGAVRQGLVKGMLQAEAELRRLVDLFGIDNVLVELTDHRAPTD 236 Query: 179 ESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQ 238 ELA L VAT + + F+ A+ +LD+ P Sbjct: 237 SRDNDLLAELASRHSLLTVATTAAHYAGAEQFELACALSAVRARRSLDEMDGWLPPGPVA 296 Query: 239 YMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKE 298 +RS EM +LF+ +A+ NTV +A+R ++ P+ P + + + Sbjct: 297 RLRSGAEMADLFSRHRDAVDNTVAVAERTAFHLK---SVRPRLPDQKVPDGHTPISWLRH 353 Query: 299 GLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPV 358 +EE + D+ P +RL TEL +I GF GYFLIV + +++++ G+ + Sbjct: 354 LVEEGRRACYGDD-------PVAKDRLATELDLIEDRGFAGYFLIVSDIVEFAQSQGI-L 405 Query: 359 GPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHV 418 GRGS A S V Y L IT +DP+ + L FERFL+ R PD DVDF +R++VI++V Sbjct: 406 CQGRGSAAASAVCYVLGITVVDPVFYGLPFERFLSVLREEEPDIDVDFDARRREEVIQYV 465 Query: 419 ADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL-----IPPDPGMTLAK 473 YGR +Q+ T ++ +RD+ + LG+ G D S+ +PP P Sbjct: 466 YAKYGRRNAAQVADVITYRPRSAVRDMAKALGYSQGQQDAWSRQMERRSVPPLP------ 519 Query: 474 AFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEE 533 +P PEI + + +A+++ G+ R+ G H+ G+V+ + P+ Sbjct: 520 ---HDPDGPEIPDD------VTTLAQQVMGLPRHLGIHSAGMVLTREPVGRICPIEPARM 570 Query: 534 GKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDD 593 V Q+DK D + GLVKFD LGL L+ ++ + ++I++ + +A+IP ++ Sbjct: 571 FGRTVLQWDKEDCAWMGLVKFDLLGLGMLSALSISFDLISQHCGRF----WTLASIPRNE 626 Query: 594 KKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFID 653 +DML R ++ VFQ+ESR + RL+P CF D+ + L RPGP+Q G V +I Sbjct: 627 PGVYDMLCRGDSIGVFQVESRAQIGALPRLKPRCFYDLAVEIGLIRPGPVQGGAVHPYIR 686 Query: 654 RKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMG 713 R+ G E ++YP H L+PVLE T GI L+QEQ+MQ+A + T AD+LRRAMG Sbjct: 687 RRTGVEPVTYP-----HPLLEPVLERTLGIPLFQEQLMQMATTVGNCTAADADLLRRAMG 741 Query: 714 KKKP-EEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTL 772 K+ E + R+ EG NGI+ + A I+ +E FA +GF +SH+ ++A + Y + Sbjct: 742 SKRGVERIDSLRTKLFEGMAANGIDDDTAQGIYARIESFANFGFAESHALSFAGLVYTSA 801 Query: 773 WLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDI---------------- 816 W+K HYPA F+AA++ + LV + R G+ PD+ Sbjct: 802 WIKLHYPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRPDVARSSVGADLELLDACC 861 Query: 817 --------------------NSGLYHFHVN-DDGE--------IVYGIGAIKGVGEGPIE 847 S + F N DDG+ + G+ + G+ Sbjct: 862 EELGSEELETGIDECLHDHDESEIGAFDPNRDDGDHRRDTHFAVRLGLSDVSGINIETAT 921 Query: 848 AIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALK 907 I+E R + F L DL R D L+ +E L ++GAFD L R + +G Sbjct: 922 RIVEERERES-FASLDDLARRVD---LSGEEVEALALAGAFDDLVGSRRGALWQIGQING 977 Query: 908 AADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPIN 967 A + + Q + EP Q+E +L + G+ HP+ Sbjct: 978 VAPGQLDVQVVTQPPLL----PEPTQME-------------LLGDDLRATGISTADHPVR 1020 Query: 968 QYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLE 1027 Q + R G V++ + E + I AG+V + T G + L+D +G L Sbjct: 1021 QVRDALNRR-GVVQVDRLDGVETRRRIEVAGVVTHRQRPGTAGG--VTFLNLEDETGLLN 1077 Query: 1028 VMLFTDALDKYQQLLEKDRILIVSG 1052 V++ A Y+++ R L+V G Sbjct: 1078 VIVTPGAWRHYRRVARTSRALVVRG 1102 >UniRef50_B4W2C3 DNA polymerase III, alpha subunit subfamily, putative n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4W2C3_9CYAN Length = 835 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 223/507 (43%), Positives = 321/507 (63%), Gaps = 38/507 (7%) Query: 234 YSPQQYMRSEEEMCELFAD------IPEALANTVEIAKRCNVTVRLGEYFLPQFPTGD-M 286 YS +Y++S EEM +LF D I EA+ANT+E+A + +GE +P +P Sbjct: 3 YSGTEYLKSAEEMAQLFRDHLPDEVIQEAIANTLEVADKVKRYDIMGEPRIPNYPVPKGH 62 Query: 287 STEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVME 346 S + YL + +GL ER+ R Y ERLE EL+++ QMGF YFL+V + Sbjct: 63 SADSYLEEVTWDGLLERMGC-----RSRSDIDLVYKERLEYELKMMQQMGFSTYFLVVWD 117 Query: 347 FIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 406 +I++++D +PVGPGRGS AGSLVAY+LKIT++DP+ LLFERFLNPER SMPD D DF Sbjct: 118 YIKYARDQKIPVGPGRGSAAGSLVAYSLKITNIDPVHHGLLFERFLNPERKSMPDIDTDF 177 Query: 407 CMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPD 466 C+E+RD+VIE+V YG D V+QIITF M +KAV++DV RVL PYG DR++K+IP Sbjct: 178 CIERRDEVIEYVTHKYGADRVAQIITFNRMTSKAVLKDVARVLNIPYGESDRMAKMIPVS 237 Query: 467 PGM-TLAKAFEAE----PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTK 521 G T K +E P+ + Y + EV+ +DMA ++EG + G HA GVVI+ Sbjct: 238 RGKPTKLKVMISEKTPTPEFRDAYLNNPEVQRWLDMAIRIEGTNKTFGVHAAGVVISSEP 297 Query: 522 ITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKN-- 579 + + PL + EG +TQ+ D+E GL+K DFLGL+ LT I E+I + + Sbjct: 298 LDEIVPLQVNNEGA-VITQYFMEDLESLGLLKMDFLGLKNLTTIQKTAELIRQHQNITLD 356 Query: 580 -GEPPLD------------IAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPD 626 + PLD I IP D K+++ +L++ E +FQLES GM+ +++ L+P Sbjct: 357 LDQLPLDERKAFEIVAKGEIKKIPDDIKQTYTVLEKGELEGIFQLESSGMRQVVRELKPS 416 Query: 627 CFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILY 686 ED+ +++AL+RPGPL +G++ FI+RKHG+E++ Y QH L+P+L+ TYG + Y Sbjct: 417 SIEDISSILALYRPGPLDAGLIPKFINRKHGKEKVEY-----QHPLLEPILKETYGTLCY 471 Query: 687 QEQVMQIAQVLSGYTLGGADMLRRAMG 713 QEQ+M++AQ L+GY+LG AD+LRR + Sbjct: 472 QEQIMKMAQDLAGYSLGQADLLRRCLS 498 Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust. Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 11/108 (10%) Query: 687 QEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFD 746 QE+V ++ + + + MGKKK EM K R +F +GA KNG+ +A ++F+ Sbjct: 664 QEEVFDLSISQTHNLIANDFIAHNCMGKKKVAEMEKHREIFIDGAAKNGVAKRIAEELFE 723 Query: 747 LVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNT 794 + FA Y +SY T L Y A + ++ ++ T Sbjct: 724 QMILFAEY-----------CLSYDTQILTVEYGAVAIGEIVEKQIECT 760 >UniRef50_Q7UXK9 Error-prone DNA polymerase n=1 Tax=Rhodopirellula baltica RepID=DNAE2_RHOBA Length = 1145 Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust. Identities = 315/1113 (28%), Positives = 540/1113 (48%), Gaps = 100/1113 (8%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 R+V L S++S +DG + LV++AA LG LAITD ++ G+V+ + G++ Sbjct: 104 RYVELHCRSNFSFLDGASHPDELVQRAAELGYEGLAITDRESIAGVVRGFSPAQELGLQY 163 Query: 65 IVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL 124 IVG + + + + + + Y + ++S R + D + E Sbjct: 164 IVGTEVH------PTDAPPMVLWPTDRAAYGRMCRMLSTGRMRCEKGRCELSFED-IAEH 216 Query: 125 NEGLILLSGGRMGDVGRSLLRGNSALVDECVAF----YEEHFPDR-YFLELIRTGRPD-- 177 +G+ L+G D RS+ A V++ F + + F DR Y L G D Sbjct: 217 AQGI--LAGVIATDESRSI-EDQHAHVNDSRQFLRGPFRDVFDDRGYLLASFHRGVDDAA 273 Query: 178 EESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQ 237 + ++L L+ A +P++A DVR+ + H+ VAI G +++ + R + Q Sbjct: 274 KATWLR---NLSLATDVPLLACGDVRYHSAERMALHDCVVAISQGKSVEQIQSDRLVNSQ 330 Query: 238 QYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLP-QFPTGDMSTEDYLVKRA 296 ++RS EE+ EL+ D+P+A+A T+E+A+RC T+ +Y P + M+ ++L + Sbjct: 331 HHLRSLEEIAELYRDVPDAVARTIEVAQRCTFTLDQLKYEYPVELAPEGMTPIEHLKRLT 390 Query: 297 KEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGV 356 EG R P++ E L E+ +I + + YFL V + +++++ + Sbjct: 391 WEGARGRWPNGVPEK---------VIETLRHEVTLIEDLQYEAYFLTVWDLVRFARSQEI 441 Query: 357 PVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIE 416 + GRGS A S+V Y L IT +DP DLLFERF++ ER PD DVDF ++R++V++ Sbjct: 442 -LCQGRGSAANSVVCYCLGITSVDPTHTDLLFERFISRERGEAPDIDVDFEHQRREEVLQ 500 Query: 417 HVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFE 476 ++ + YGRD AK+ IR+VG+ L +D ++K LA ++ Sbjct: 501 YLYEKYGRDRAGMTAVVTCYRAKSAIREVGKALAISPDIIDAVAK---------LAGSYS 551 Query: 477 AEPQLPEI-----YEADEEV-KALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYC 530 P+LPE + D + + + + L G R+ +H GG+V+ + + L Sbjct: 552 RNPELPERCRDAGLDPDTPLGRRFLYLTETLIGFPRHLSQHVGGMVMTAGSLCE---LCV 608 Query: 531 DEEGKHP---VTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIA 587 E P V Q++K D++ G++K D L L L+ I E++ + L ++ Sbjct: 609 TENAAMPGRSVIQWNKDDLDDIGILKVDILALGMLSAIRRCFELVKDHHNRE----LSLS 664 Query: 588 AIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGM 647 IP DD ++DM+ ++T VFQ+ESR ++ RL+P C+ D++ VA+ RPGP+Q M Sbjct: 665 TIPPDDTPTYDMICAADTMGVFQIESRAQMSMLPRLKPRCYYDLVIEVAIVRPGPIQGNM 724 Query: 648 VDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADM 707 V F+ + YP+ ++++ VLE T G+ ++QEQ M++A V +G+T G AD Sbjct: 725 VHPFLAARENPAAAKYPN-----DAIRKVLEKTLGVPIFQEQAMKLAVVAAGFTPGEADQ 779 Query: 708 LRRAMGK-KKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 LRRAM ++P + + R+ EG + NG+N E A +F + F YGF +SH+A++AL Sbjct: 780 LRRAMAAWRRPGVIDRFRTKLLEGMKANGLNGEFAENVFRQIRGFGEYGFPESHAASFAL 839 Query: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 + Y + +LK HYP F AA++ + L+ + + G+++LP DIN + Sbjct: 840 LVYASCYLKRHYPTAFCAALLDSQPMGFYAPAQLIRDAQQHGVQVLPVDINDSNIRSKLI 899 Query: 827 DD-----GEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLN--RRVL 879 D ++ G+ ++G+ + II AR+ G F L DL R + N Sbjct: 900 PDLNRPHPKLRLGLQMVRGLPSAVAQKIIVARDANGPFANLHDLTTRAKLSRSNIATLAD 959 Query: 880 EKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAE-EPE-QIEQS 937 + S A DR RAA+ SL A D D +LA+ EP+ + + Sbjct: 960 ADALASIAQDR----RAAVWQSL-----AQDD--------SGDSMPLLADLEPDCSVPEE 1002 Query: 938 YASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAA 997 P E + + T GL L HP++ + ++ + R D+ G + A Sbjct: 1003 LVPMSPAEE---VKNDYATTGLSLKAHPVSFWRDDLN-ALRCKRASDLPKLRDGVHVRVA 1058 Query: 998 GLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFD 1057 GLV+ + T +G I T++D +G + ++LF ++ ++ IV G++ + Sbjct: 1059 GLVLMRQRPGTAKG--ITFVTMEDETGSMNLVLFAQVWKRFFKIARGSDAWIVDGKL--E 1114 Query: 1058 DFSGGLKMTAREVMDIDEAREKYARGLAISLTD 1090 + G + + V D+ E A GL + D Sbjct: 1115 NKKGVIHVIVGRVEDLSEK----ASGLKVPRRD 1143 >UniRef50_B2ZNW2 Gp65 n=6 Tax=unclassified Siphoviridae RepID=B2ZNW2_9CAUD Length = 1100 Score = 412 bits (1059), Expect = e-113, Method: Compositional matrix adjust. Identities = 296/901 (32%), Positives = 440/901 (48%), Gaps = 85/901 (9%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 +FV L HS +S DG V++ A LGM ALA+T+ NL + A + GIKP Sbjct: 36 KFVSLHTHSTFSYGDGYGPVKEHVQRVAELGMGALALTEHGNLSSHAQLEKACNEIGIKP 95 Query: 65 IVGADF-------NVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIID 117 I G + N +C H TVLA N G QNL +++K+++ Y P Sbjct: 96 IFGCELYVAPPGENRKC--------HQTVLAMNEVGLQNLNRIVTKSWKNFY--RWPTTS 145 Query: 118 RDWLIELNEGLILLSGGRMGDVGRSLLRGNS-------------ALVDECVAFYEEHFPD 164 L E NEGLI+LSG + +LL G S A + Y+E F D Sbjct: 146 WKMLEEHNEGLIVLSGCADSVLSCTLLGGKSYGDKRLTASKRDIARAAGLIGRYQEVFGD 205 Query: 165 RYFLELIRTGRPDEESYLHAAV-ELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGF 223 RY+LE R D L+ + L+E G +V T DV + SD + +I A H G Sbjct: 206 RYYLEAQRFPGLDRTCALNPLLARLSELTGARLVGTADVHYPRGSDNEMQKILHAAHRGS 265 Query: 224 TLDDPKRPRNYSPQQYMRSEEEMCELFADI----------PEALANTVEIAKRCNVTVRL 273 T++ + Y + E E++ D+ EA+ + IA+RCNV + Sbjct: 266 TVEATEASWEYD--ILLTYPESDREIYMDLVGTGLTKAQAREAVLESGRIAERCNVILPK 323 Query: 274 GEYFLPQFPTGD-------MSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLE 326 + PT + MS + + K EG R+A K R Y R+E Sbjct: 324 NQPIRFPKPTKEVDGTKVPMSANELIRKWLNEGWHFRMA----TNPNMRKNRQAYKARVE 379 Query: 327 TELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEF-D 385 EL ++ + F YFL++ + ++W+KD+ +PVGP RGS A SLV Y L+IT++DP+ F Sbjct: 380 HELGMMEEKDFLDYFLVLSDAVRWAKDHKIPVGPARGSAAASLVCYLLRITEVDPMLFPH 439 Query: 386 LLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDV 445 +LFERF++P R +PD D+DF ++R +V ++ + YG D V I F K I DV Sbjct: 440 MLFERFIDPTRTELPDVDLDFSDDRRIEVKRYLEEKYGADRVGNIGNFTRYRGKNSIDDV 499 Query: 446 GRVLGHPYGFVDRISKLIPPDPGM------TLAKAFEAEPQLPEIYEADEEVKALIDMAR 499 RV P + + LI G +L F P+ + E E+ I Sbjct: 500 ARVYNIPVWETEIVKNLIIERSGGDSRISDSLEDTFNMFPKAAAVLERHPELANAI---- 555 Query: 500 KLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQ---FDKSDVEYAGLVKFDF 556 +LEG R G HA G+VI+ T ITD +Y + E TQ +DK D EY G++K DF Sbjct: 556 RLEGNYRGMGVHAAGIVISNTPITDTCAVY-ERESAGKTTQVIAYDKKDGEYVGMLKADF 614 Query: 557 LGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGM 616 LGL T+ +I AL+MI G D+ IPLDD+K + +R + T +FQ E R Sbjct: 615 LGLSTMGMIGIALDMI-------GMDLEDLYRIPLDDQKVLEAFRRGDVTGIFQFEGRAT 667 Query: 617 KDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPV 676 + + + PD F+ + + AL RPGPL SGM + + KHGR+ + H L + Sbjct: 668 RIVCSDVVPDHFQHLADINALSRPGPLFSGMTAAYCEVKHGRK-----TPERYHPILDNL 722 Query: 677 LEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE-EMAKQRSVFAEGAEKN- 734 + TYG ++YQEQV+ + L G+ + +R+ + +K E + + +F + A +N Sbjct: 723 TDWTYGQVVYQEQVLSTIRELGGFPMSEVHSIRKIISQKLGEAQFEAKYKMFEDNACQNH 782 Query: 735 GINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNT 794 G E A KI+ + A Y FN +H +Y++++Y +W+K H+P F AA + N Sbjct: 783 GCTPEQAQKIWRFLATSATYSFNIAHCISYSMLAYWQMWIKQHHPTAFYAAQLRK--VND 840 Query: 795 EKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARN 854 EK+ L+ + R + ILPP IN + + +G + G I GVG E I+E RN Sbjct: 841 EKLYKLMRDAVRHNISILPPSINESMASWSAPMEGVVRAGFLQIPGVGPKTSEVIVEWRN 900 Query: 855 K 855 + Sbjct: 901 Q 901 >UniRef50_D0LSK7 DNA polymerase III, alpha subunit n=2 Tax=Nannocystineae RepID=D0LSK7_HALO1 Length = 1074 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 318/1101 (28%), Positives = 517/1101 (46%), Gaps = 108/1101 (9%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 + L S++S ++G + L+++A ALG+ ALA++D L G+V+ + G K I Sbjct: 4 YAPLWCKSNFSFLEGASHPDELIEEAHALGLRALALSDRDGLYGVVRAHVCAEKIGFKLI 63 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 GA +V D+ + + +L + GY NL L++K +R + + R+ Sbjct: 64 HGAQVSV------DDGSQIVLLCRDRAGYANLCHLLTKGRRRSDKGSSQVSWREVCAHAG 117 Query: 126 EGLILLSGG-----------RMG----DVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170 GLI L GG R G D+ R L + + E F D + L Sbjct: 118 -GLIALWGGAGSLLTRPGENRPGGVPADIPRPLGGRPQSYLGRVADDLREAFGDALY-AL 175 Query: 171 IRTGRPDEESYLHAAVEL-AEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPK 229 R EE A + AE GLPV A +V + + ++ + TL Sbjct: 176 CARHREAEEVVTEARLRARAERFGLPVAAAVEVLYHSRARRPLQDVLTCLRHHVTLSTAG 235 Query: 230 RPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLP--QFPTGDMS 287 R + + + S + LF D P A+A T++IA RC + Y P + P+G + Sbjct: 236 RYIRANDEHDLHSPQAFGILFDDDPAAVARTLDIAARCQFGLGEIRYRYPSERLPSGK-T 294 Query: 288 TEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347 T ++L + + EG R P + +L EL +I+++ + GYFL + E Sbjct: 295 TSEWLRELSFEGARWRYRGEVP---------ADVRAQLTRELALIDELDYGGYFLTMYEI 345 Query: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 +++ + G+ + GRGS A S V Y L IT +DP+ LLFERFL+ ER PD D+D Sbjct: 346 VRFCRAQGI-LCQGRGSAANSAVCYCLDITAVDPVRMGLLFERFLSRERAEPPDIDLDIE 404 Query: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467 ++R++VI+HV D YGRD + + ++ +RDVG+VLG P +DR +KL+ Sbjct: 405 HDRREEVIQHVYDKYGRDHAAMVAVVIRYRPRSAVRDVGKVLGIPATSLDRCAKLLSHYE 464 Query: 468 GMTLAKAFEA---EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524 G+T A+A E +P LP ++D R L H GG ++ + Sbjct: 465 GIT-AEALEQAGMDPHLPAHQHLGRLASEILDFPRHLS-------IHPGGFLLGHEPVHS 516 Query: 525 FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584 P+ V Q+DK+D+E GL K D LGL L ++ +++++ R + L Sbjct: 517 LVPIENGAMAGRTVIQWDKNDLEDLGLFKVDLLGLGALNQLHRCFDLVSEHRGID----L 572 Query: 585 DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644 +A IP DD ++DM+ R++T VFQ+ESR ++ RL+P F D++ V++ RPGP+ Sbjct: 573 SMATIPADDTATYDMICRADTVGVFQIESRAQMSMLPRLRPRYFYDLVIEVSIVRPGPIT 632 Query: 645 SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704 GMV ++ R+HG E+I YP HESL+PVLE T G+ L+QEQVM++A V + YT G Sbjct: 633 GGMVHPYLRRRHGLEKIEYP-----HESLEPVLERTLGVPLFQEQVMRLAMVAADYTPGE 687 Query: 705 ADMLRRAMGK-KKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAA 763 AD LRR M ++ + + R + GI AE A ++F+ + F YGF +SH+A+ Sbjct: 688 ADQLRRDMAAWRRSGRIDQHRERLVSAMTRKGIAAEFAERVFEQIRGFGEYGFPESHAAS 747 Query: 764 YALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHF 823 +AL++Y T +++ H+PAE+ A++ A ++++ R G+ + P D+ + + Sbjct: 748 FALIAYATAYMRCHFPAEYACALLNAQPMGFYSPATIINDARRHGVSVRPIDVGASAWDC 807 Query: 824 HV--------------NDDGE------------IVYGIGAIKGVGEGPIEAIIEARNKGG 857 + D G+ I G+ +KG+ I +AR + Sbjct: 808 TLEPLPASQRRTTEENGDSGDSDSDAPARICYAIRMGLRYVKGLRRDAGTRIEDARARAP 867 Query: 858 YFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEA 917 F +L D RT +L+ R +L SGA G +R ++ + +A Sbjct: 868 -FADLGDFVRRT---RLDERSHTRLAESGALAAFGRNRRDVLWQVRGHQRAKSDTLSLPQ 923 Query: 918 IGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYV 977 G A L + E + W Q L R GHP+ + L+ R Sbjct: 924 TGPAPSLAQLDQLDEIL---------WDYQASLHSTR--------GHPL-EPLRASLRAQ 965 Query: 978 GGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDK 1037 + + G+ + AGLV+ + T G + TL+D SG + ++++ Sbjct: 966 NIADARSVQRMRHGQRLRYAGLVICRQRPPTAAG--VTFMTLEDESGFVNLVIWQQVWAS 1023 Query: 1038 YQQLLEKDRILIVSGQVSFDD 1058 Y L + L VSG+V ++ Sbjct: 1024 YGVLAKSTAFLGVSGRVQAEE 1044 >UniRef50_Q98PK3 DNA POLYMERASE III, ALPHA CHAIN n=1 Tax=Mycoplasma pulmonis RepID=Q98PK3_MYCPU Length = 981 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 298/1036 (28%), Positives = 507/1036 (48%), Gaps = 120/1036 (11%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F++L +S+YS +D L + LV+ A + L +TD TN G KFY IK + Sbjct: 4 FINLHTNSEYSFLDSLIRINDLVQYAKENNLKTLVLTD-TNFHGADKFYFLCKKNNIKAV 62 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 +G D V + + +LA N +G+++L +L S++ + G I + L + Sbjct: 63 LGLDIEV-------DHKRVILLAKNTSGFRSL-MLFSESNRNGLE-----ISLNQLEKTQ 109 Query: 126 EGLILLSGGRMG----DVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181 + LI+++ R+G ++ +S ++ FY T D++ Sbjct: 110 DDLIIINHPRLGFSMDEIAQSSIKN----------FY-------------NTSNNDQDPL 146 Query: 182 LHAAVE--LAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQY 239 VE L + P+ + ++S++ + + GF+ +Y+P Sbjct: 147 SLYVVENKLFNVKDNPI-----LEMLNSTNNNQKNKGIEFK-GFS--------HYAP--- 189 Query: 240 MRSEEEMCELFADIPEALANTV-EIAKRCNVTVRLGEYFLPQFPTG-DMSTEDYLVKRAK 297 I E + + +I +CN + E LP+F +S++D+LVK K Sbjct: 190 -------------ISELMQKRINDIVDQCNFEYKKPEITLPKFMNNLGISSKDFLVKILK 236 Query: 298 EGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVP 357 E E+ +L++ +R++ EL VI+++GF YFLI+ + I W+K N + Sbjct: 237 ESWHEK--------SHKLQKYDNAKQRIKYELSVISKLGFEDYFLIIWDIINWAKKNKIA 288 Query: 358 VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEH 417 +GPGRGS +GSLV+Y L IT+++PLEF+L FERFLN +R+SMPD D+D +RD+++ + Sbjct: 289 IGPGRGSASGSLVSYLLNITEVNPLEFNLFFERFLNEDRISMPDIDIDVQDNRRDELLNY 348 Query: 418 VADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEA 477 + + YG VS I TF + AK+ IRDVGR LG ++ ISK I D +LA+ +E Sbjct: 349 IFEKYGEQNVSTISTFQFLGAKSSIRDVGRFLGINIAKINEISKHI--DAQQSLAEQYEN 406 Query: 478 EPQLPEIYEADEE--VKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGK 535 L + E+ K LID A K+EG+ R G HA G++I+ KI ++ P + Sbjct: 407 NQSLRSYLQNQEDPIFKKLIDFAMKIEGLPRQTGTHAAGIIISNEKINNYIPTFIVNNKN 466 Query: 536 HPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKK 595 +Q+ ++E G +K DFLGL+TL+ I I +R A+ + D + D+K Sbjct: 467 Q--SQYSMENIEKMGFLKIDFLGLKTLSTIT----HIEERIAQFEQIDFDKINSYIIDEK 520 Query: 596 SFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRK 655 +L+ T +FQ+ES GM + I ++ D F+D+ A ++L+RPGPL+ V Sbjct: 521 IKKVLENKSTLGIFQIESPGMTNTINKINVDDFKDIYAAISLYRPGPLKFISV------- 573 Query: 656 HGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKK 715 + + + + +++ E +++ TYGII+YQEQ+M+IAQ +SG+ AD+LR+A+ KK Sbjct: 574 YAKNKKNPKNIKKIIEPYDNIVKDTYGIIVYQEQIMEIAQKVSGFKFTEADVLRKAISKK 633 Query: 716 KPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 775 + + ++ F +G KNG + I+ +E FA YGFNKSH+ AYA++ Y+ L+ K Sbjct: 634 DITLLDEMKAKFIQGGIKNGHPKNVVENIYLTIEDFAQYGFNKSHAVAYAVLVYKMLYYK 693 Query: 776 AHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGI 835 AHYP F ++++ + N + + E + + P IN+ + ++ E+ + Sbjct: 694 AHYPLFFYSSLIKTNHTNQDNLKTYFLEAKKNNIAFYSPSINN-VSEQNILSKNEMFLPL 752 Query: 836 GAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHR 895 IKG G + + + G ++ D R +L + +E LI + A G + Sbjct: 753 IMIKGFGPAAYNKVYKDFQENGLYKSFDDFIQRAWKMELGKANIETLIKANALREFGNMK 812 Query: 896 AALM---NSLGDALKAADQHAKAEA--IGQADMFGVLAEEPEQIEQSYASCQPWPEQVVL 950 L + D + + AK + I ++ F Q+E S S + + Sbjct: 813 DLLTLFKEVIEDKFEIVSKLAKVQGDDIDISNFF--------QLEFSKNSSRDI--EFER 862 Query: 951 DGERETLGLYLTGHPINQYLKE-IERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTK 1009 E E LG + N+ + +E + LK+MHP G L+ + ++TK Sbjct: 863 KNEEEYLGYFYNSPSQNENSNQNLENEDLTINLKNMHP---GTEHVLDILITQKKSIMTK 919 Query: 1010 RGNRIGICTLDDRSGR 1025 + I +D S + Sbjct: 920 DDHLIKRLEFEDDSMK 935 >UniRef50_D1J8K0 DNA polymerase III, alpha chain n=1 Tax=Mycoplasma hominis ATCC 23114 RepID=D1J8K0_MYCHP Length = 996 Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust. Identities = 259/910 (28%), Positives = 463/910 (50%), Gaps = 82/910 (9%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 + ++L +++ +S ++ +++ + IT+ N + F +KP Sbjct: 2 KLINLHLNTIFSFLESTITINDFIQELLNNNIEYFGITEHCNFYSMPHFLNEARKHDLKP 61 Query: 65 IVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL 124 I G D NV+ + + L V N + NL +L ++GY I RD+ Sbjct: 62 IFGLDVNVKIE---NNLYRFIVYCQNKESFMNLKMLSLNYGKKGYIDLAEI--RDY---- 112 Query: 125 NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHA 184 LI + G ++ N+ L + YF + D E ++ Sbjct: 113 -SNLIWIEHPIFGYYKKT----NNIL----------EIENHYF----AISQYDIE---NS 150 Query: 185 AVELAEARGLPVVATNDVRFIDSS------DFDAHEIRVAIHDGFTLDDPKRPRNYSPQQ 238 ++ + L + + +++ D+S + ++I +I++ F +D + Sbjct: 151 EIQNIFDKCLLINHNSILKYDDNSIIKTMSNISNNKIFESIYEEFKVDIETKNN------ 204 Query: 239 YMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAK 297 + + E + T + AK+ + + +P+F ++++ +YL Sbjct: 205 ------------SKLEELIERTNDFAKKLYFEIETKGFKMPKFKNDKNIASNEYLKLLLF 252 Query: 298 EGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVP 357 + + E+ ++ EY +R EL+VI + F YFL+V +++ W+K+N + Sbjct: 253 KSIREKF--------DKYSWTDEYQQRFLKELKVIEDLNFADYFLVVQDWVNWAKNNNIK 304 Query: 358 VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEH 417 +GPGRGS AGSL+ Y L IT++DP+++DL+FERFLN RV+MPD D+D KR+ VIE+ Sbjct: 305 IGPGRGSAAGSLIGYLLNITEVDPIKYDLIFERFLNSNRVTMPDIDIDVQDNKRNDVIEY 364 Query: 418 VADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEA 477 + YG + V+ I+TF ++ K+ IRD+ R+ ++ ISK I D L + E Sbjct: 365 LLKKYGHEFVANIVTFSSLGKKSAIRDILRINNIAPTLINEISKNIENDEQDLLVEYNEN 424 Query: 478 ---EPQLPEIYEADEEVKA-LIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEE 533 + L ++ DE +++ A ++ G R G HA G+VI+ + AP+ + E Sbjct: 425 RNLQLSLAKLNPNDESFSIRILNQAARISGFYRQIGTHAAGLVISDQPVISIAPVQYNSE 484 Query: 534 GKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDD 593 TQ +E GLVK D LGL+TLT I+ +++I +N +++ I L D Sbjct: 485 N-FLQTQISMEYLEDFGLVKMDILGLKTLTTISNIVDLI----YQNQNLKINLKDIDLTD 539 Query: 594 KKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFID 653 +K+ ++L T VFQ+ES M +++++ + FED++A+++L RPGP+++ V + Sbjct: 540 QKTLELLSSGHTRGVFQVESPIMIKALRQVKVNNFEDIVAIISLNRPGPIKNVSV--YAK 597 Query: 654 RKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMG 713 RK G E I P + +++ +L+ TYGII+YQEQ+M+IAQV++ T AD LRR + Sbjct: 598 RKFGLEPI--PKINNEYD---KILDSTYGIIVYQEQIMKIAQVVAKMTFIEADNLRRIIS 652 Query: 714 KKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLW 773 KKK EM +S+F E A KNG LA IF+ +EKFA YGFN+SH+ +Y+++++Q + Sbjct: 653 KKKVNEMEDIKSIFIERAMKNGYEKSLATNIFNSIEKFASYGFNRSHAVSYSIITFQMAF 712 Query: 774 LKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVY 833 LKAHYP EF + +++ + + + V+E G++I+ PDIN + + +I+ Sbjct: 713 LKAHYPLEFYTSCISSAHGSQDTIAKFVNEASECGVEIVSPDINLSESEAII-KNRKIIL 771 Query: 834 GIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCAR-TDTKKLNRRVLEKLIMSGAFDRLG 892 + IKG+G +I+E R+K G ++ D + + ++ + + +E LI + Sbjct: 772 PLTLIKGLGPEIANSIVENRSKYGPYKNFLDFLLKISSSQSIGKSTIELLIKANTLRSFN 831 Query: 893 PHRAALMNSL 902 ++ L+N + Sbjct: 832 YNQNTLLNEI 841 >UniRef50_D1BHX7 DNA polymerase III, alpha subunit n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BHX7_SANKS Length = 1117 Score = 405 bits (1041), Expect = e-111, Method: Compositional matrix adjust. Identities = 333/1141 (29%), Positives = 523/1141 (45%), Gaps = 131/1141 (11%) Query: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61 + P + L HS +S +DG + L +A LG+ ALA+TD L G+V+F A G Sbjct: 9 ARPEYAELHAHSAFSFLDGANQPEELAAEAYRLGLTALALTDHDGLYGVVRFAEAARQLG 68 Query: 62 IKPIVGADFNVQCDLLG--DELT--------HLTVLAANNTGYQNLTLLISKAYQRG--Y 109 + I GA+ ++ D +G D T HL VLA GY+NL+ I++ + Sbjct: 69 LPTIFGAELHLP-DAVGTLDAPTGVPDPRSEHLLVLARGPQGYRNLSSAIAEGHLSTGRK 127 Query: 110 GAA-------GPIIDRDWLIELNEGLILLSGGRMGDVGRSLL--------RGNSALVDEC 154 GAA G D WL+ L+G R G V RS L RG + +D Sbjct: 128 GAADHSLEELGARADGQWLV--------LTGCRKGAV-RSALGSGPTWDPRGAATQLDRL 178 Query: 155 VAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHE 214 VA + D +E+ TG P ++ LA A + +VAT + D D Sbjct: 179 VATFGR---DNVAVEVTSTGDPYDDERNEHLAALAHAARVDLVATTAAHYAHPRDADLAA 235 Query: 215 IRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLG 274 A+ +LDD +P ++RS EM + PEA+ + C + L Sbjct: 236 ALAAVRARSSLDDMDGWLPGAPSAHLRSAGEMLARHSAHPEAVTAAARLGAECAFDLSLV 295 Query: 275 EYFLPQFPTGDMSTE-DYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVIN 333 LP +P TE +L + + G R P E ER+ P +++ EL++I Sbjct: 296 APNLPPYPVPAGHTEATWLRELVRRGALHRYG---PRESERV---PGAYAQIDRELRIIE 349 Query: 334 QMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLN 393 + FPGYFL+V + +++ + NG+ + GRGS A S V YAL IT +D + LLFERFL Sbjct: 350 DLTFPGYFLVVYDLVEFCRVNGI-LAQGRGSAANSAVCYALGITAVDAVAHGLLFERFLA 408 Query: 394 PERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPY 453 PER PD DVD ++R++VI+HV D +GR +Q+ + ++ +RD R LG+ Sbjct: 409 PERDGPPDIDVDIESQRREEVIQHVFDTFGRRHAAQVANVISYRPRSAVRDAARALGYDT 468 Query: 454 GFVDRISKLI---------PPDP-----GMTLAKAFEAEPQLPEI--------------- 484 G D SK I PP P GM K + A Q I Sbjct: 469 GQQDAWSKQIERWGSLRPAPPSPEAVAAGMPEGKPYGALEQRERIRDPLVEPTARDDRAM 528 Query: 485 --------------YEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYC 530 + ++ A++D+A + + R+ G H+GG+V+ + + P+ Sbjct: 529 AREGMWVKGGHAPQRDTEDIPDAVVDLAERFLRLPRHLGIHSGGMVMCDRPVIEVCPVEW 588 Query: 531 DEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIP 590 V Q+DK D AGLVKFD LGL LT + A E ++ L + +P Sbjct: 589 ARMPGRTVLQWDKEDCADAGLVKFDLLGLGMLTALRIAFEQVSTHEGVE----LTLHGLP 644 Query: 591 LDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDN 650 +D + +L ++T VFQ+ESR + RLQPDCF D++ VAL RPGP+Q V Sbjct: 645 QEDPGVYRLLCAADTIGVFQVESRAQISTLPRLQPDCFYDIVIEVALIRPGPIQGNSVHP 704 Query: 651 FIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRR 710 +I RK GRE+++Y H L+ L T G+ L+QEQ+MQ++ L+ +T AD LRR Sbjct: 705 YIARKRGREKVTY-----LHPLLEKSLGKTLGVPLFQEQLMQMSIDLADFTPTEADALRR 759 Query: 711 AMGKKKP-EEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSY 769 AMG K+ E+M G EK GI+ +IFD ++ FA +GF +SH+ ++A + Y Sbjct: 760 AMGSKRSTEKMEALHERLLSGMEKKGIDRVAGEEIFDKLKGFADFGFPESHAYSFAYLVY 819 Query: 770 QTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDG 829 + WLK H+P F A ++ A LV + R + +L PD+ + V Sbjct: 820 ASAWLKVHHPEAFYAGLLAAQPMGFYSPQSLVADARRHDVPVLRPDLLASQPQAAVEPAP 879 Query: 830 ------EIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLI 883 + G+ +++ V E ++ R + G F +L DL R +L LE L Sbjct: 880 GSARGLAVRLGLASVRTVTTEVAERLVAERTEHGPFLDLRDLARRV---RLTTAQLEALA 936 Query: 884 MSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIG-QADMFGVLAEEPEQIEQSYASCQ 942 +GA D LG R + + G + ++G A M ++E + ++++ Sbjct: 937 TAGALDCLGVERREALWAAGALAQERPDTLPGVSVGVSAPMLPGMSEVETAVADTWST-- 994 Query: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVA 1002 G+ +P QY + G + +++ E G+ + G+V Sbjct: 995 ---------------GVTTESYP-TQYARPGLVRAGAITVEECRTAEEGRRVAVGGVVTH 1038 Query: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGG 1062 + T RG + +L+D +G+L V+ +++++ L+V G++ +D + Sbjct: 1039 RQRPGTARG--VTFLSLEDETGQLNVICSPGLWQRFRRVARTSAALVVRGRLERNDGATN 1096 Query: 1063 L 1063 L Sbjct: 1097 L 1097 >UniRef50_A4X9U2 DNA polymerase III, alpha subunit n=5 Tax=Actinomycetales RepID=A4X9U2_SALTO Length = 1124 Score = 405 bits (1040), Expect = e-111, Method: Compositional matrix adjust. Identities = 339/1085 (31%), Positives = 510/1085 (47%), Gaps = 103/1085 (9%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 + L H+++S +DG + L ++A LG+ ALA+TD G+V+F A + + Sbjct: 74 YAELHTHTNFSFLDGASHPEELAEEAVRLGLTALAVTDHDGFYGVVRFAEAARALHLPTV 133 Query: 66 VGADF--------NVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIID 117 GA+ N + D LG HL +LA + GY L IS+A RG PI Sbjct: 134 FGAELSLDLPGAPNGEPDPLG---RHLLLLAHGHEGYARLAATISRAQLRGGEKGRPIYG 190 Query: 118 R--DWLIELNEGLILLSGGRMGDVGRSLL-RGNSALVDECVAFYEEHFPDRYFLELIRTG 174 + EL + +++L+G R G V +LL G A E + +EL G Sbjct: 191 ELAEVAAELRDHVLVLTGCRKGHVPAALLTEGVDAAARELDRLTALFGAETVAVELTDHG 250 Query: 175 RPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNY 234 P + A ELAEA GLP VATN+V + A+ +LD+ Sbjct: 251 HPIDADRNDALAELAEAAGLPTVATNNVHYATPGRRRLATTLAAVRARRSLDEIDGWLPA 310 Query: 235 SPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTE-DYLV 293 + ++RS EM FA P A+A E ++L LP +P TE +L Sbjct: 311 AGAAHLRSGAEMAARFAAYPGAVARAAEFGAELAFDLQLVAPALPAYPVASGHTEMSWLR 370 Query: 294 KRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKD 353 G ER P E PE +LE EL +I ++GFPGYFL+V + + + ++ Sbjct: 371 HLTARGARERYG---PPEAH-----PEAYAQLEHELNMIEELGFPGYFLVVYDIVTFCRE 422 Query: 354 NGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQ 413 + GRGS A S V YAL+IT++D + LLFERFL PER PD DVD +R++ Sbjct: 423 QDI-YCQGRGSAANSAVCYALRITNVDAVRHRLLFERFLAPERDGPPDIDVDIESSRREE 481 Query: 414 VIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAK 473 VI+HV YGR+ +Q+ + ++ +RDV + G G D SK I D ++A Sbjct: 482 VIQHVYARYGREHTAQVANVISYRPRSAVRDVAKAFGFSPGQQDAWSKQI--DRWGSVAA 539 Query: 474 AFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEE 533 A ++ E V A D ++ R+ G H+GG+VI + + P+ E Sbjct: 540 A--------DVEGIPEPVVAYAD---AVQTFPRHLGIHSGGMVICDRPVIEVCPV---EW 585 Query: 534 GKHP---VTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIP 590 G+ P V Q+DK D GLVKFD LGL L ++ +MI R L++ + Sbjct: 586 GRMPGRSVLQWDKDDCAAVGLVKFDLLGLGMLAALHHGYDMIGAR--------LELGDMT 637 Query: 591 LDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDN 650 LDD + +DML R++ VFQ+ESR + RL+P CF D++ VAL RPGP+Q G V Sbjct: 638 LDDDEVYDMLCRADAVGVFQVESRAQMATLPRLKPRCFYDLVVEVALIRPGPIQGGSVHP 697 Query: 651 FIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRR 710 +I RK+G+E +++P H ++ LE T G+ L+QEQ+MQ+A L+G+ AD LRR Sbjct: 698 YIRRKNGQEPVTFP-----HPLMRNALEKTLGVPLFQEQLMQLAIDLAGFDAAEADQLRR 752 Query: 711 AMG-KKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSY 769 AMG K+ E MA+ G + GI ELA ++ + FA YGF +SH+ ++A + Y Sbjct: 753 AMGAKRSAERMARIADRLYAGMAERGITGELADDVYRKLTAFASYGFPESHAMSFAYLVY 812 Query: 770 QTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDIN---------SGL 820 + WLK ++PA F+AA++ A LVD+ R G+++ PD+N S Sbjct: 813 ASSWLKRYHPAPFLAALLNAQPMGFYSPQTLVDDARRHGVEVRRPDVNASGAGAVLESTP 872 Query: 821 YHFHVNDDGE-----------IVYGIGAIKGVGEGPIEAIIEA-RNKGGYFRELFDLCAR 868 + GE + G+ +++ +G G + IE R G +R++ DL R Sbjct: 873 STRWGSQPGEPPHAWGLGGPAVRLGLDSVRTLG-GEVAGRIETERAARGPYRDMSDLARR 931 Query: 869 TDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLA 928 L LE L + AF G R + S G AA +H Sbjct: 932 V---GLTAAQLEALATADAFACFGVTRRQALWSAG---AAAQEHPD-------------- 971 Query: 929 EEPEQIEQSYASCQPWPEQV-VLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHP 987 P + + A P V L + GL HP ++++E +G V + + Sbjct: 972 RLPGTVPGTVAPTLPGMGAVDRLVADVWATGLSPESHPA-RFVREQLDALGAVPIARLAR 1030 Query: 988 TERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRI 1047 E G+ + G+V + T G + L+D +G L V +Y+Q+ + Sbjct: 1031 VEPGRRVRVGGIVTHRQRPATAGG--VTFLNLEDETGMLNVTCSPGLWQRYRQVAKNSGG 1088 Query: 1048 LIVSG 1052 L+V G Sbjct: 1089 LVVRG 1093 >UniRef50_Q3A3S3 DNA polymerase III, alpha subunit n=2 Tax=Desulfuromonadales RepID=Q3A3S3_PELCD Length = 1047 Score = 404 bits (1039), Expect = e-111, Method: Compositional matrix adjust. Identities = 329/1066 (30%), Positives = 490/1066 (45%), Gaps = 104/1066 (9%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F HL VHS +S G+ A L A A GM LA+TD + G+ F A AGI P+ Sbjct: 35 FTHLHVHSAFSPNWGIHSPATLCAAAKAAGMTRLALTDRNGMYGIPCFLEAAQKAGIAPL 94 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 +GA+ + G + +LA N GY NL L+S + P L Sbjct: 95 IGAE-----AVSGSQ--RAVLLARNQDGYANLCRLLSALHD-----PQPFDLAVALATWR 142 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 185 EGL +LS N+A++ E + F+E R ++ A Sbjct: 143 EGLYILS-------------DNAAVLGRLA----EQSREGLFVETSPGHRMEQ------A 179 Query: 186 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 245 + LA GLP VAT+ F+ ++D H + AI TL P ++R+E + Sbjct: 180 MFLARRLGLPPVATSRAVFLQNADIKTHRVLRAIAGNTTLSRLSAETCAGPADFLRAETD 239 Query: 246 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF-PTGDMSTEDYLVKRAKEGLEERL 304 + F PEAL N IA C P+F D L +RA EG R Sbjct: 240 LKAAFPHYPEALENAARIADNCQTNWDFSATIFPRFRGLADQQASTLLERRAHEGAIRRY 299 Query: 305 AFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGS 364 + + RL EL +I GF YFL+V E + S P GRGS Sbjct: 300 G----------EMNTKIAARLSKELTIIRDKGFAHYFLVVQELAKRS-----PRTCGRGS 344 Query: 365 GAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGR 424 A SLVAY L IT +DPL ++L FERFLN R+ PD D+DF ++RD V++ YG Sbjct: 345 AAASLVAYCLGITHVDPLRYNLFFERFLNKGRIDPPDIDIDFPWDERDAVLDFAFQRYGN 404 Query: 425 DAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEPQLPE 483 + + ++ +R+V +V G P + I++ + + KA ++ P L Sbjct: 405 QRAAMVANQVGFKSRGALREVAKVFGMPADEIKTITRRLSSHWSIQRGTKAMDSHP-LFR 463 Query: 484 IYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDK 543 + + ++ +A +L G R+ +H GG+VI P I + P +G+ P+ Q++K Sbjct: 464 GESLSSDWQDILAIATRLNGQLRHLSQHCGGLVIVPDDIRQYVPTEVSAKGR-PLIQWEK 522 Query: 544 SDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAI-PLDDKKSFDMLQR 602 E AGLVK D LG R+L +I AL ++ N +D PL D K+ +L Sbjct: 523 DQTEAAGLVKIDILGNRSLAVIRDALTAVHHHTGNN----IDYRNWQPLTDAKTRALLCS 578 Query: 603 SETTAVFQLESRGMKDLIKRL-----QPD---CFEDMIALVALFRPGPLQSGMVDNFIDR 654 +T F +ES + L+K++ PD FE ++ ++ RP + ++ F+ R Sbjct: 579 GDTIGCFYIESPATRQLLKKMWGNRPMPDEDTLFEHLVMASSIIRPA--ANNVIREFVAR 636 Query: 655 KHGREEISYPDVQWQHES--LKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAM 712 HG+ W H L+P+L+ TYG+ +YQEQ+ QIA LSG++ D LR+ + Sbjct: 637 MHGKP--------WHHLHPLLEPILDETYGLAVYQEQITQIAMALSGFSASEGDRLRKII 688 Query: 713 GKK-KPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQT 771 KK K + + R F +G +NGI+A + KI+ V FAGY F K HSA+YALVS + Sbjct: 689 SKKDKGKTLDDYRQRFMQGGNRNGISAAVLKKIWQQVLSFAGYSFCKPHSASYALVSCKA 748 Query: 772 LWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEI 831 WLKA++PAEFMAAV++ + +G + E RMGL IL PDIN+ + D ++ Sbjct: 749 AWLKANHPAEFMAAVIS-NGGGYYTPLGYLSEARRMGLHILTPDINTSDRAYR-GKDRDL 806 Query: 832 VYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRL 891 G+ I V + IE I+ R K G F + + R L +++LI +G FD L Sbjct: 807 RIGLMQIAAVAQATIEVILNERRKNGPFSDYENFLWR--LPHLPVADIKQLIKAGCFDAL 864 Query: 892 --GPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVV 949 R L+ L Q A A AD V EP + Y + V Sbjct: 865 EGSEQRPGLIWRLLQL-----QRGPATA---ADTLFVTEPEPPPVLPPY-------DAVT 909 Query: 950 LDG-ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVT 1008 L E ETLG+ + HP+ Y + I R G V ++ G+ IT G V + + T Sbjct: 910 LQTQELETLGMPVGSHPLVPYAEAI-RSSGAVPAAEL-SRWIGRHITLVGWWVTGKPVRT 967 Query: 1009 KRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQV 1054 +G + T +D + + F A ++ + + R ++ G V Sbjct: 968 VKGQPMEFVTFEDATALFDATFFPAAYARFCRNFGRSRPYLIKGVV 1013 >UniRef50_Q5Z1D1 Error-prone DNA polymerase n=42 Tax=Bacteria RepID=DNAE2_NOCFA Length = 1146 Score = 404 bits (1039), Expect = e-111, Method: Compositional matrix adjust. Identities = 324/1109 (29%), Positives = 510/1109 (45%), Gaps = 113/1109 (10%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 + L HS YS +DG ++ LV++A LG+ A+A+TD G V+F A GI + Sbjct: 62 YAELHAHSAYSFLDGASQPEELVEEAVRLGLEAIALTDHDGFYGTVRFAEAAKEWGIATV 121 Query: 66 VGADFNVQCDLLGDELT----------------------------------------HLT 85 GA+ ++ + HL Sbjct: 122 FGAELSLGVARPAPRRSARKAARGRGRAVRYAATPEFEHAAAPDSAPRTGEPDPPGPHLL 181 Query: 86 VLAANNTGYQNLTLLISKAYQRGYGAAGPI-IDRDWLIELNEG-LILLSGGRMGDVGRSL 143 VLA GY+ L+ I+ A+ G G + D D L G +L+G R G + +L Sbjct: 182 VLARGQEGYRRLSREIAAAHL-AAGEKGVLRYDIDALTAAAGGHWHILTGCRKGHLRTAL 240 Query: 144 L-----------RGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEAR 192 R +AL D E DR +EL G P ++ + LA+ Sbjct: 241 ADDLAAGETGLPRAEAALRD----LVERFGADRVSVELTHHGVPADDERNALLIALADRV 296 Query: 193 GLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFAD 252 GLPV+AT F AI +LD+ + ++RS EM LFA Sbjct: 297 GLPVLATTGAHFAGPEQRRRAMALAAIRARRSLDEMAGWLAPAGGAHLRSGAEMARLFAA 356 Query: 253 IPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTED-YLVKRAKEGLEERLAFLFPDE 311 P+A+AN V +++ C +RL LP F D E+ +L + G R + Sbjct: 357 CPDAVANAVALSRECAFDLRLIAPQLPPFAVPDGHDENSWLRELVLRGAARRYGPPHAN- 415 Query: 312 EERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVA 371 P +LE EL+VI +GFPGYFL+V + + + + NG+ + GRGS A S V Sbjct: 416 -------PPAYRQLEHELEVIATLGFPGYFLVVHDIVSFCERNGI-LCQGRGSAANSAVC 467 Query: 372 YALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQII 431 +A+ IT++DP+ +LLFERFL+PER PD D+D ++R++ I+HV YGR+ +Q+ Sbjct: 468 FAIGITNVDPVANELLFERFLSPERDGPPDIDIDIESDRREEAIQHVYARYGREYAAQVA 527 Query: 432 TFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEV 491 T K+ +RD + LG G D SK + G+ E +PE Sbjct: 528 NVITYRGKSAVRDAAKALGFSPGQQDAWSKQVSRWTGV----GAETGTDIPE-------- 575 Query: 492 KALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGL 551 ++ +A LEG+ R+ G H+GG+VI I D P+ V Q+DK D GL Sbjct: 576 -QVLRLAADLEGLPRHMGIHSGGMVICDRPIADVCPVEWARMAGRSVLQWDKDDCAAVGL 634 Query: 552 VKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQL 611 VKFD LGL L+ +++ ++++ + + + + L + ++ML R+++ VFQ+ Sbjct: 635 VKFDMLGLGMLSALHYMIDLVREHEGVE----VRLHELDLKEPAVYEMLSRADSVGVFQV 690 Query: 612 ESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHE 671 ESR + RL+P F D++ VAL RPGP+Q G V +I R++G E ++Y H Sbjct: 691 ESRAQMATLPRLRPREFYDLVVEVALIRPGPIQGGSVHPYIRRRNGTEPVTY-----DHP 745 Query: 672 SLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKK-PEEMAKQRSVFAEG 730 +L+ L T G+ L+QEQ+MQ+A ++G+T AD LRRAMG K+ PE M + + G Sbjct: 746 ALENSLGRTLGVPLFQEQLMQMAVDVAGFTAAEADQLRRAMGSKRSPERMRRLKERLYRG 805 Query: 731 -AEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTA 789 AE +GI E+A +I++ + FA +GF +SHS ++A + + + W K H+PA F A ++ A Sbjct: 806 MAELHGITGEVADRIYEKLYAFANFGFPESHSQSFAALVFYSAWFKLHHPAAFCAGLLRA 865 Query: 790 DMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDG-EIVYGIGAIKGVGEGPIEA 848 LV + R G+ + PD+N+ L + + G E+ G+ ++ +G E Sbjct: 866 QPMGFYSPQSLVADARRHGVPVHGPDVNASLAEATLENGGREVRLGLAGVRHIGSELAER 925 Query: 849 IIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKA 908 I+ AR + G + + DL R + L E L +GAFD + A + A Sbjct: 926 IVAARVEHGPYTSVLDLTGRVE---LTVAQAEALATAGAFDSVTGPSGAERSGGRRAALW 982 Query: 909 ADQHAKAEAIGQADMFGVLAEEPEQIEQS---YASCQPWPEQVVLDGERETLGLYLTGHP 965 A A E G A+ P S A+ W + + G Y T Sbjct: 983 AAGAAARERAHLLPGTGPAADAPALPGMSALELAAADVWATGI-------SPGSYPT--- 1032 Query: 966 INQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGR 1025 ++L+ +G + + G + G V + T G + L+D +G Sbjct: 1033 --EFLRARMDELGVIPAGRLLEVRDGSRVLVGGAVTHRQRPATAAG--VTFLNLEDETGM 1088 Query: 1026 LEVMLFTDALDKYQQLLEKDRILIVSGQV 1054 + V+ +Y+ L + L+V G+V Sbjct: 1089 VNVVCSVGLWTRYRALAQSASALLVRGRV 1117 >UniRef50_A5CR60 DNA polymerase III, alpha chain n=2 Tax=Micrococcineae RepID=A5CR60_CLAM3 Length = 1140 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 347/1125 (30%), Positives = 550/1125 (48%), Gaps = 117/1125 (10%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F HL V S +S G + LV + A+ G PA AITD L G V+ AG+ P+ Sbjct: 3 FTHLHVASAFSAHFGTSAPEALVDRVASEGAPAAAITDRDGLYGAVRHIRRSLAAGVSPV 62 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNT---GYQNLTLLISKAYQRGYG-------AAGPI 115 VGA+ L G+ +TVLA T G+ L+ LIS ++ RG AG Sbjct: 63 VGAELG----LTGEHPGRITVLAHGGTRGQGWAALSRLISASHGRGTARSTARSAQAGIA 118 Query: 116 IDRDWLIELNE----GLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELI 171 R L E G ++L G DVGR++ G+ AL +A + P +E++ Sbjct: 119 RTRPPAFLLGEDGPVGTVML--GPDSDVGRAVAAGDHALASRHLAEWARLLPGAVVVEVV 176 Query: 172 -RTGRPDEESYL-HAA--VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDD 227 P E + L HAA +ELA+A +P V TN VR+++ D ++ A L Sbjct: 177 CHFTEPGESASLRHAARMLELADAHRVPAVLTNAVRYLEPDDALTGDVLDAAGTLRPLGS 236 Query: 228 PKRPRNYSPQQYMRSEEEMCELFADIPEA-----------LANTVEIAKRCNVTVRLG-E 275 RP+ Q ++++ EM + +I A L T E+A RC + Sbjct: 237 -FRPQPNG-QAWLKTPTEMQGIAREIAGASSLDRRAGEALLRATEELADRCRLDPDADLA 294 Query: 276 YFLPQFP-------TGDMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETE 328 + P+ P TGD ++ L ++A+ G+ ER + +E +++R R+ TE Sbjct: 295 WRKPKLPEKSVIGVTGD--PDEALWRKAEAGVTERFGHV----DEAMRQR--VLARMRTE 346 Query: 329 LQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLF 388 L I GF YFL V + +D GV RGSGAGSLV Y L+I+++DPLE DLLF Sbjct: 347 LTTITGFGFATYFLTVADVCALMRDMGV-RNQARGSGAGSLVNYLLRISNVDPLEHDLLF 405 Query: 389 ERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRV 448 ERFL R ++PD D+D +R +V V + YG + V+ + T A+ RD G Sbjct: 406 ERFLGKVRSTLPDIDIDVESARRHEVYHRVFEKYGSNRVTLLSMQNTYRARGAARDAGLA 465 Query: 449 LGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEA---DEEVKALIDMARKLEGVT 505 L +D I+K I E +P+L I + D + L+D+ +L+ + Sbjct: 466 LDLDEQQIDFIAKNIWRFNAREFRAVLETKPELKPIADLVRDDPSIDLLVDLTERLDRLP 525 Query: 506 RNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTII 565 R+ H GV++ + + +P+ G P++QFDK D++ GL+K D LG+R + + Sbjct: 526 RHISMHPCGVILGDSDLLSTSPVQPSGMGL-PMSQFDKDDIDDMGLLKLDILGVRMQSTM 584 Query: 566 NWALEMINK----RRAKNGEPPLD-----------IAAIPLDDKKSFDMLQRSETTAVFQ 610 +AL+ I++ R A G P+D + IP DD+++F ++ + T +FQ Sbjct: 585 AYALDEIHRIHGARSAVAGGIPVDARYVHRDGRIELDEIPHDDEETFAAIRTTHTLGMFQ 644 Query: 611 LESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQH 670 +ES G ++LI ++QPD +ED+IA V+LFRPGP++ MV F+D KHG I+ PD + H Sbjct: 645 IESPGQRELIGKMQPDVYEDLIADVSLFRPGPMKGNMVAPFLDTKHG---ITLPD--YLH 699 Query: 671 ESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKP--EEMAKQRS--- 725 P L PT+G+++Y EQV++I +L AD LRR M + E+ ++R+ Sbjct: 700 PRFAPFLAPTFGVVIYHEQVIRIFADCMQVSLAEADELRRNMERMDTVVEQAFRERTAMH 759 Query: 726 VFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAA 785 V + +A++ +I+ ++ F +GF K+H AA+AL ++Q+ WLK HYPAEF+A Sbjct: 760 VDGRTGRRPFSDADVE-RIWKALKGFGSFGFCKAHGAAFALPTWQSAWLKTHYPAEFLAG 818 Query: 786 VMTADMDNTEKVVGLVDECWRMGLKILPPDIN--SGLYHFHVNDDGEIVYGIGAIKGVG- 842 ++T D K + L+ E RMG+ +LP D+N G+Y D GE G I +G Sbjct: 819 ILTHDPGMYPKRL-LLTEARRMGVPVLPLDVNRSRGVYRVERVDGGETT-GRTRIGELGI 876 Query: 843 -------EGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPH- 894 G EA +E +G + + D A+ + +R +LE+L GA D L + Sbjct: 877 RLSLQDVHGMSEAELERIERGQPYDSISDFYAKA---QPSRALLERLAAVGALDPLATNE 933 Query: 895 --RAAL-MNSLGDALK-----AADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPE 946 RAA S GD + A A+ GQ +F ++ + I + P P+ Sbjct: 934 DDRAARGAASRGDVMAYVRRLTARAARPADPAGQLPLF---VDDRDLIPRG----SPDPD 986 Query: 947 -QVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARV 1005 + + E + L + +T H + Y ++ +G + + G + AG+ +A + Sbjct: 987 GRARVAAELDILQMEVTEHVLESYRPMLDE-LGVIPASQLLEVRSGSEVVVAGIRIATQT 1045 Query: 1006 MVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIV 1050 + G R+ +LDD +G + F +A K +L R+L++ Sbjct: 1046 PPMRSGKRVVFISLDDGTGCSDSTFFDEAQQKAGPMLFGTRLLVI 1090 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q8X8X5 DNA polymerase III subunit alpha n=288 Tax=cellu... 1658 0.0 UniRef50_P52022 DNA polymerase III subunit alpha n=118 Tax=Gamma... 1547 0.0 UniRef50_Q9HXZ1 DNA polymerase III subunit alpha n=46 Tax=Gammap... 1403 0.0 UniRef50_C5BQZ9 DNA polymerase III, alpha subunit n=10 Tax=Gamma... 1377 0.0 UniRef50_A1AQQ6 DNA polymerase III, alpha subunit n=12 Tax=Delta... 1359 0.0 UniRef50_B5E8T0 DNA polymerase III, alpha subunit n=6 Tax=Deltap... 1355 0.0 UniRef50_A4J6X6 DNA polymerase III catalytic subunit, DnaE type ... 1353 0.0 UniRef50_D0LJI6 DNA polymerase III, alpha subunit n=1 Tax=Halian... 1325 0.0 UniRef50_Q1D042 DNA polymerase III, alpha subunit n=1 Tax=Myxoco... 1322 0.0 UniRef50_Q2Z0E7 DNA polymerase III, alpha subunit n=1 Tax=uncult... 1317 0.0 UniRef50_Q8K9S3 DNA polymerase III subunit alpha n=4 Tax=Enterob... 1314 0.0 UniRef50_B5EQR5 DNA polymerase III, alpha subunit n=4 Tax=Bacter... 1312 0.0 UniRef50_C9KIR5 DNA polymerase III, alpha subunit n=1 Tax=Mitsuo... 1311 0.0 UniRef50_C0Z7W1 DNA polymerase III alpha subunit n=1 Tax=Breviba... 1307 0.0 UniRef50_Q67RP9 DNA polymerase III alpha subunit n=4 Tax=Clostri... 1304 0.0 UniRef50_C6BS12 DNA polymerase III, alpha subunit n=4 Tax=Desulf... 1303 0.0 UniRef50_B6FXS8 Putative uncharacterized protein (Fragment) n=1 ... 1301 0.0 UniRef50_B0TI36 DNA polymerase iii alpha subunit, putative n=1 T... 1300 0.0 UniRef50_A3EVF9 DNA polymerase III, alpha subunit n=3 Tax=Leptos... 1297 0.0 UniRef50_Q2LTT3 DNA polymerase III alpha subunit n=3 Tax=Deltapr... 1296 0.0 UniRef50_B5YEZ7 DNA polymerase III alpha subunit n=2 Tax=Dictyog... 1292 0.0 UniRef50_B3DUG0 DNA polymerase III, alpha subunit n=1 Tax=Methyl... 1292 0.0 UniRef50_C0QG07 DnaE n=1 Tax=Desulfobacterium autotrophicum HRM2... 1291 0.0 UniRef50_Q2S3X0 DNA polymerase III, alpha subunit n=1 Tax=Salini... 1291 0.0 UniRef50_D2RIQ1 DNA polymerase III, alpha subunit n=3 Tax=Veillo... 1291 0.0 UniRef50_A8ZSF2 DNA polymerase III, alpha subunit n=6 Tax=Deltap... 1289 0.0 UniRef50_D1BNX7 DNA polymerase III, alpha subunit n=3 Tax=Veillo... 1284 0.0 UniRef50_C9XRY5 DNA polymerase III alpha subunit n=38 Tax=Clostr... 1284 0.0 UniRef50_Q1IN02 DNA polymerase III, alpha subunit n=2 Tax=Acidob... 1280 0.0 UniRef50_Q1MRR3 DNA polymerase III, alpha subunit n=3 Tax=Desulf... 1274 0.0 UniRef50_C5V5V8 DNA polymerase III, alpha subunit n=2 Tax=Gallio... 1274 0.0 UniRef50_C6J6J2 DNA polymerase III (Fragment) n=4 Tax=Bacteria R... 1274 0.0 UniRef50_Q1PZM1 Similar to DNA polymerase III, alpha subunit n=1... 1271 0.0 UniRef50_B8D1J8 DNA polymerase III catalytic subunit, DnaE type ... 1269 0.0 UniRef50_C8ND72 DNA polymerase III, alpha subunit n=1 Tax=Cardio... 1266 0.0 UniRef50_C1SP26 DNA polymerase III, alpha subunit n=1 Tax=Denitr... 1264 0.0 UniRef50_A0LCM6 DNA polymerase III, alpha subunit n=1 Tax=Magnet... 1262 0.0 UniRef50_C1F714 DNA polymerase III, alpha subunit n=1 Tax=Acidob... 1261 0.0 UniRef50_UPI00017463A7 DNA polymerase III, alpha subunit n=1 Tax... 1257 0.0 UniRef50_D1B9W1 DNA polymerase III, alpha subunit n=3 Tax=Synerg... 1256 0.0 UniRef50_B9XPL1 DNA polymerase III, alpha subunit n=1 Tax=bacter... 1255 0.0 UniRef50_Q9JVX8 DNA polymerase III subunit alpha n=201 Tax=cellu... 1255 0.0 UniRef50_B2TQR7 DNA polymerase III subunit alpha n=23 Tax=Clostr... 1254 0.0 UniRef50_A0PYC7 DNA polimerase III, alpha chain n=22 Tax=Bacteri... 1252 0.0 UniRef50_B5YIK8 DNA polymerase III alpha subunit n=1 Tax=Thermod... 1252 0.0 UniRef50_D0SVP0 DNA polymerase subunit III n=3 Tax=Gammaproteoba... 1249 0.0 UniRef50_B8FTK4 DNA polymerase III, alpha subunit n=2 Tax=Desulf... 1249 0.0 UniRef50_Q87EY0 DNA polymerase III subunit alpha n=22 Tax=Gammap... 1246 0.0 UniRef50_A6G5Y5 DNA polymerase III, alpha subunit n=1 Tax=Plesio... 1242 0.0 UniRef50_C4Z382 DNA polymerase III subunit alpha n=1 Tax=Eubacte... 1241 0.0 UniRef50_A7HG87 DNA polymerase III, alpha subunit n=4 Tax=Anaero... 1241 0.0 UniRef50_C4ZGM2 DNA polymerase III, alpha subunit n=7 Tax=Bacter... 1239 0.0 UniRef50_C1DXC6 DNA polymerase III subunit alpha n=3 Tax=Sulfuri... 1239 0.0 UniRef50_Q1AX16 DNA polymerase III catalytic subunit, DnaE type ... 1237 0.0 UniRef50_Q0F0W7 Putative uncharacterized protein n=2 Tax=root Re... 1235 0.0 UniRef50_Q3Z6I2 DNA polymerase III, alpha subunit n=5 Tax=Dehalo... 1235 0.0 UniRef50_B0S231 DNA polymerase III alpha subunit n=3 Tax=Clostri... 1235 0.0 UniRef50_D1C3B9 DNA polymerase III, alpha subunit n=1 Tax=Sphaer... 1234 0.0 UniRef50_Q6FAL5 DNA polymerase III, alpha chain n=16 Tax=Acineto... 1234 0.0 UniRef50_B1C7S2 Putative uncharacterized protein n=1 Tax=Anaerof... 1233 0.0 UniRef50_Q3AVK2 DNA polymerase III, alpha subunit n=11 Tax=Cyano... 1231 0.0 UniRef50_A5EV47 DNA polymerase III, alpha subunit n=1 Tax=Dichel... 1230 0.0 UniRef50_D2R3M9 DNA polymerase III, alpha subunit n=4 Tax=Planct... 1229 0.0 UniRef50_D1Y4Y5 DNA polymerase III, alpha subunit n=1 Tax=Pyrami... 1228 0.0 UniRef50_A9GWC5 DNA polymerase III, alpha subunit n=1 Tax=Sorang... 1228 0.0 UniRef50_C1A6B9 DNA polymerase III alpha subunit n=1 Tax=Gemmati... 1227 0.0 UniRef50_B5Y9K9 DNA polymerase III subunit alpha n=1 Tax=Coproth... 1225 0.0 UniRef50_D1CB25 DNA polymerase III, alpha subunit n=1 Tax=Thermo... 1224 0.0 UniRef50_Q055U5 DNA-directed DNA polymerase, alpha subunit n=6 T... 1223 0.0 UniRef50_D1KB28 DNA polymerase III, alpha subunit n=1 Tax=uncult... 1220 0.0 UniRef50_Q9XDH5 DNA polymerase III subunit alpha n=6 Tax=Bacteri... 1219 0.0 UniRef50_C7RGV3 DNA polymerase III, alpha subunit n=4 Tax=Clostr... 1219 0.0 UniRef50_A5GTL9 DNA polymerase III alpha subunit n=20 Tax=cellul... 1219 0.0 UniRef50_B2KB15 DNA polymerase III, alpha subunit n=1 Tax=Elusim... 1218 0.0 UniRef50_B9KZ27 DNA polymerase III alpha subunit n=1 Tax=Thermom... 1218 0.0 UniRef50_C6D8C3 DNA polymerase III, alpha subunit n=5 Tax=Firmic... 1217 0.0 UniRef50_C7H0A9 DNA polymerase III, subunit alpha n=1 Tax=Eubact... 1216 0.0 UniRef50_A1AX67 DNA polymerase III, alpha subunit n=2 Tax=sulfur... 1215 0.0 UniRef50_O51526 DNA polymerase III subunit alpha n=25 Tax=Borrel... 1213 0.0 UniRef50_C3WEY7 DNA polymerase III alpha subunit n=1 Tax=Fusobac... 1207 0.0 UniRef50_Q11YX8 DNA polymerase III, alpha subunit n=3 Tax=Bacter... 1207 0.0 UniRef50_A1ZEC3 DNA polymerase III alpha subunit n=2 Tax=Bactero... 1206 0.0 UniRef50_B5VUX8 DNA polymerase III, alpha subunit n=2 Tax=Arthro... 1205 0.0 UniRef50_O83675 DNA polymerase III subunit alpha n=5 Tax=Trepone... 1205 0.0 UniRef50_C7MKU1 DNA-directed DNA polymerase III PolC n=1 Tax=Cry... 1204 0.0 UniRef50_B8GWS6 DNA polymerase III subunit alpha n=75 Tax=Alphap... 1203 0.0 UniRef50_O34623 DNA polymerase III subunit alpha n=111 Tax=Bacte... 1202 0.0 UniRef50_O67125 DNA polymerase III subunit alpha n=4 Tax=Aquific... 1201 0.0 UniRef50_A0YQD0 DNA polymerase III subunit alpha n=1 Tax=Lyngbya... 1198 0.0 UniRef50_B1GZ26 DNA polymerase III subunit alpha n=2 Tax=cellula... 1198 0.0 UniRef50_B2UNA1 DNA polymerase III, alpha subunit n=1 Tax=Akkerm... 1193 0.0 UniRef50_B0VJC8 DNA polymerase III, alpha subunit n=1 Tax=Candid... 1193 0.0 UniRef50_B0MN02 Putative uncharacterized protein n=1 Tax=Eubacte... 1193 0.0 UniRef50_A6CCN9 DNA polymerase III alpha subunit n=1 Tax=Plancto... 1193 0.0 UniRef50_Q4FSI0 DNA polymerase III, alpha subunit n=6 Tax=Bacter... 1192 0.0 UniRef50_Q6MLD4 DnaE protein n=1 Tax=Bdellovibrio bacteriovorus ... 1191 0.0 UniRef50_C6JJK2 DNA-directed DNA polymerase III alpha subunit n=... 1191 0.0 UniRef50_D1NB43 DNA polymerase III, alpha subunit n=1 Tax=Victiv... 1189 0.0 UniRef50_C1XIK2 DNA polymerase III, alpha subunit n=2 Tax=Meioth... 1185 0.0 UniRef50_UPI0001C3188F DNA polymerase III, alpha subunit n=1 Tax... 1183 0.0 UniRef50_Q0C1C2 DNA polymerase III, alpha subunit n=2 Tax=Alphap... 1183 0.0 UniRef50_D1NST8 DNA polymerase III, alpha subunit n=1 Tax=Bifido... 1181 0.0 UniRef50_B1XVK6 DNA polymerase III, alpha subunit n=21 Tax=Burkh... 1180 0.0 UniRef50_D0WG97 DNA polymerase III, alpha subunit n=1 Tax=Slacki... 1180 0.0 UniRef50_B9JDK3 DNA polymerase III alpha subunit protein n=54 Ta... 1178 0.0 UniRef50_C7N8B2 DNA-directed DNA polymerase III PolC n=2 Tax=Cor... 1178 0.0 UniRef50_C5EYF1 DNA polymerase III alpha subunit n=3 Tax=Helicob... 1177 0.0 UniRef50_B1ZMU7 DNA polymerase III, alpha subunit n=3 Tax=Opitut... 1175 0.0 UniRef50_C6VZ84 DNA polymerase III, alpha subunit n=3 Tax=Sphing... 1172 0.0 UniRef50_B0MXW1 Putative uncharacterized protein n=1 Tax=Alistip... 1171 0.0 UniRef50_C7M0P6 DNA polymerase III, alpha subunit n=1 Tax=Acidim... 1170 0.0 UniRef50_P63978 DNA polymerase III subunit alpha n=117 Tax=root ... 1169 0.0 UniRef50_Q9Z618 DNA polymerase III subunit alpha n=43 Tax=Actino... 1169 0.0 UniRef50_C8WER6 DNA polymerase III, alpha subunit n=10 Tax=Alpha... 1166 0.0 UniRef50_D2LTB4 DNA polymerase III, alpha subunit n=1 Tax=Bacill... 1165 0.0 UniRef50_B0TZK7 DNA-directed DNA polymerase n=16 Tax=Francisella... 1161 0.0 UniRef50_B4S7C7 DNA polymerase III, alpha subunit n=11 Tax=Chlor... 1153 0.0 UniRef50_C4F7F9 Putative uncharacterized protein n=2 Tax=Collins... 1153 0.0 UniRef50_B5JFB3 DNA polymerase III, alpha subunit subfamily, put... 1150 0.0 UniRef50_Q160T2 DNA polymerase III, alpha subunit n=39 Tax=Rhodo... 1147 0.0 UniRef50_Q6Q8S4 Predicted DNA polymerase III, alpha subunit n=1 ... 1146 0.0 UniRef50_C8W788 DNA polymerase III, alpha subunit n=1 Tax=Atopob... 1143 0.0 UniRef50_A8VX11 DNA polymerase III, alpha subunit n=1 Tax=Bacill... 1135 0.0 UniRef50_C6XJW1 DNA polymerase III, alpha subunit n=1 Tax=Hirsch... 1129 0.0 UniRef50_C8PHM9 DNA polymerase III, alpha subunit n=1 Tax=Campyl... 1129 0.0 UniRef50_Q9K838 DNA polymerase III subunit alpha n=1 Tax=Bacillu... 1126 0.0 UniRef50_Q2G7G3 DNA polymerase III, alpha subunit n=2 Tax=Alphap... 1124 0.0 UniRef50_A4IRQ9 DNA polymerase III alpha subunit n=5 Tax=Geobaci... 1121 0.0 UniRef50_B2RGQ8 DNA polymerase III alpha subunit n=2 Tax=Porphyr... 1120 0.0 UniRef50_B4CWT5 DNA polymerase III, alpha subunit n=1 Tax=Chthon... 1117 0.0 UniRef50_A6LHM2 DNA polymerase III alpha subunit n=46 Tax=Bacter... 1117 0.0 UniRef50_Q9ZJF9 DNA polymerase III subunit alpha n=51 Tax=cellul... 1116 0.0 UniRef50_C0QYZ2 DNA polymerase III, alpha subunit n=2 Tax=Brachy... 1112 0.0 UniRef50_Q83I40 DNA polymerase III alpha subunit n=2 Tax=Tropher... 1112 0.0 UniRef50_Q2GJ87 DNA polymerase III, alpha subunit n=8 Tax=Ricket... 1111 0.0 UniRef50_D1AIM1 DNA polymerase III, alpha subunit n=1 Tax=Sebald... 1111 0.0 UniRef50_A5FKC9 DNA polymerase III, alpha subunit n=26 Tax=cellu... 1111 0.0 UniRef50_A8ZS53 DNA polymerase III, alpha subunit n=1 Tax=Desulf... 1107 0.0 UniRef50_A9B8D8 DNA polymerase III, alpha subunit n=6 Tax=Chloro... 1101 0.0 UniRef50_A4EAI0 Putative uncharacterized protein n=1 Tax=Collins... 1100 0.0 UniRef50_C2MCQ0 DNA polymerase III, alpha subunit family n=1 Tax... 1099 0.0 UniRef50_C3XGX7 DNA polymerase subunit III n=1 Tax=Helicobacter ... 1099 0.0 UniRef50_C0R3A1 DNA polymerase III, alpha subunit n=9 Tax=Ricket... 1097 0.0 UniRef50_B7GGS6 DNA polymerase III, alpha subunit n=1 Tax=Anoxyb... 1093 0.0 UniRef50_A6DMI0 DNA polymerase III, alpha subunit n=1 Tax=Lentis... 1093 0.0 UniRef50_Q9Z7N8 DNA polymerase III subunit alpha n=16 Tax=Chlamy... 1093 0.0 UniRef50_A5TY39 DNA-directed DNA polymerase III alpha subunit n=... 1091 0.0 UniRef50_B3XXI1 Putative DNA polymerase III, alpha subunit n=1 T... 1088 0.0 UniRef50_C3JBN3 DNA polymerase III, alpha subunit family n=2 Tax... 1087 0.0 UniRef50_UPI0001C42452 DNA polymerase III alpha subunit n=1 Tax=... 1081 0.0 UniRef50_Q03SB6 DNA polymerase III catalytic subunit, DnaE type ... 1080 0.0 UniRef50_D0RP61 DNA polymerase III subunit alpha n=1 Tax=alpha p... 1079 0.0 UniRef50_B9CKX0 DNA polymerase III subunit alpha n=1 Tax=Atopobi... 1077 0.0 UniRef50_B9L5T8 DNA polymerase III alpha subunit n=1 Tax=Nautili... 1076 0.0 UniRef50_Q4FM70 DNA polymerase III alpha subunit n=8 Tax=Candida... 1071 0.0 UniRef50_C3CTJ5 Putative uncharacterized protein n=1 Tax=Bacillu... 1069 0.0 UniRef50_C7NEL3 DNA polymerase III, alpha subunit n=3 Tax=Leptot... 1068 0.0 UniRef50_Q8CXA8 DNA polymerase III (Alpha subunit) n=1 Tax=Ocean... 1068 0.0 UniRef50_B3WE63 DNA-directed DNA polymerase III, alpha subunit n... 1066 0.0 UniRef50_Q38WU5 DNA-directed DNA polymerase III, alpha subunit n... 1065 0.0 UniRef50_C7XU22 DNA polymerase III n=1 Tax=Lactobacillus coleoho... 1060 0.0 UniRef50_Q1RKF9 DNA polymerase III subunit alpha n=21 Tax=Ricket... 1060 0.0 UniRef50_D0JAY7 DNA polymerase III subunit alpha n=2 Tax=Blattab... 1037 0.0 UniRef50_D2EL28 DNA polymerase III subunit alpha n=1 Tax=Pedioco... 1037 0.0 UniRef50_C2D6U4 Possible DNA-directed DNA polymerase n=1 Tax=Ato... 1035 0.0 UniRef50_C4YXX0 DNA polymerase III, alpha subunit family n=1 Tax... 1029 0.0 UniRef50_Q2GEN2 DNA polymerase III, alpha subunit n=2 Tax=Neoric... 1021 0.0 UniRef50_A8RC96 Putative uncharacterized protein n=2 Tax=Erysipe... 1021 0.0 UniRef50_C9B7L3 DNA polymerase III alpha subunit n=18 Tax=Entero... 1017 0.0 UniRef50_Q1WTT4 DNA polymerase III alpha subunit n=2 Tax=Lactoba... 1011 0.0 UniRef50_C0YII7 DNA-directed DNA polymerase n=1 Tax=Chryseobacte... 1000 0.0 UniRef50_D0BKV5 DNA polymerase III, alpha subunit n=1 Tax=Granul... 1000 0.0 UniRef50_B2GC21 DNA-directed DNA polymerase III alpha subunit n=... 999 0.0 UniRef50_B1HX19 DNA polymerase III subunit alpha n=2 Tax=Bacilla... 991 0.0 UniRef50_C4FWP2 Putative uncharacterized protein n=1 Tax=Catonel... 990 0.0 UniRef50_Q67N73 Error-prone DNA polymerase n=1 Tax=Symbiobacteri... 988 0.0 UniRef50_B1MYD7 DNA polymerase III, alpha subunit n=3 Tax=Leucon... 988 0.0 UniRef50_C5RC77 DNA-directed DNA polymerase III, alpha chain n=1... 986 0.0 UniRef50_Q5WEF1 DNA polymerase III alpha subunit DnaE n=1 Tax=Ba... 985 0.0 UniRef50_Q03F73 DNA polymerase III catalytic subunit, DnaE type ... 984 0.0 UniRef50_A8YV21 DNA polymerase III alpha subunit n=5 Tax=Lactoba... 976 0.0 UniRef50_D1C6C8 DNA polymerase III, alpha subunit n=1 Tax=Sphaer... 975 0.0 UniRef50_B9L411 Error-prone DNA polymerase n=1 Tax=Thermomicrobi... 974 0.0 UniRef50_C0GKP9 DNA polymerase III, alpha subunit n=1 Tax=Dethio... 971 0.0 UniRef50_C3RN28 DNA polymerase III dnaE (Fragment) n=3 Tax=Bacte... 970 0.0 UniRef50_C8WVC5 DNA polymerase III, alpha subunit n=2 Tax=Alicyc... 967 0.0 UniRef50_C6X5Z0 DNA polymerase III alpha subunit n=1 Tax=Flavoba... 964 0.0 UniRef50_Q043V3 DNA polymerase III catalytic subunit, DnaE type ... 962 0.0 UniRef50_C8NF53 DNA polymerase III, alpha subunit n=1 Tax=Granul... 962 0.0 UniRef50_C5QT78 DNA polymerase III, alpha subunit n=5 Tax=Staphy... 959 0.0 UniRef50_Q5Z1D1 Error-prone DNA polymerase n=42 Tax=Bacteria Rep... 957 0.0 UniRef50_C2E9M6 DNA polymerase III alpha subunit n=1 Tax=Lactoba... 955 0.0 UniRef50_Q1IJA3 DNA polymerase III, alpha subunit n=4 Tax=Bacter... 949 0.0 UniRef50_Q6G8M4 DNA polymerase III subunit alpha n=62 Tax=Staphy... 949 0.0 UniRef50_C2E227 Possible DNA-directed DNA polymerase n=9 Tax=Lac... 948 0.0 UniRef50_C1F6L4 DNA polymerase III, alpha subunit n=2 Tax=Acidob... 945 0.0 UniRef50_B7CD33 Putative uncharacterized protein n=1 Tax=Eubacte... 943 0.0 UniRef50_C5B539 DNA polymerase III, alpha subunit n=1 Tax=Methyl... 942 0.0 UniRef50_C8WRV2 DNA polymerase III, alpha subunit n=2 Tax=Alicyc... 935 0.0 UniRef50_B1ZZZ1 DNA polymerase III, alpha subunit n=1 Tax=Opitut... 932 0.0 UniRef50_Q7UXK9 Error-prone DNA polymerase n=1 Tax=Rhodopirellul... 932 0.0 UniRef50_A4X9U2 DNA polymerase III, alpha subunit n=5 Tax=Actino... 927 0.0 UniRef50_D2DXW4 DNA polymerase III alpha subunit (Fragment) n=1 ... 922 0.0 UniRef50_D1BHX7 DNA polymerase III, alpha subunit n=1 Tax=Sangui... 921 0.0 UniRef50_D0LSK7 DNA polymerase III, alpha subunit n=2 Tax=Nannoc... 920 0.0 UniRef50_D2DXS3 DNA polymerase III alpha subunit n=2 Tax=Verruco... 919 0.0 UniRef50_Q6A780 Error-prone DNA polymerase n=9 Tax=Actinobacteri... 917 0.0 UniRef50_C1AAH7 Error-prone DNA polymerase n=1 Tax=Gemmatimonas ... 916 0.0 UniRef50_Q47EP3 Error-prone DNA polymerase n=16 Tax=Bacteria Rep... 914 0.0 UniRef50_B7ABG0 DNA polymerase III, alpha subunit n=2 Tax=cellul... 913 0.0 UniRef50_C1CZH7 Putative DNA-directed DNA polymerase (DNA polyme... 912 0.0 UniRef50_D0MJZ2 DNA polymerase III, alpha subunit n=1 Tax=Rhodot... 910 0.0 UniRef50_C6XNZ2 DNA polymerase III, alpha subunit n=10 Tax=Bacte... 907 0.0 UniRef50_Q9RX08 DNA polymerase III subunit alpha n=2 Tax=Deinoco... 907 0.0 UniRef50_Q1YPP6 DNA polymerase III, alpha subunit, putative n=1 ... 904 0.0 UniRef50_B9E7A8 DNA polymerase III alpha chain n=1 Tax=Macrococc... 898 0.0 UniRef50_C5BNE0 Error-prone DNA polymerase n=4 Tax=Bacteria RepI... 896 0.0 UniRef50_A7BC77 Putative uncharacterized protein n=1 Tax=Actinom... 895 0.0 UniRef50_B1XYC3 DNA polymerase III, alpha subunit n=4 Tax=Burkho... 894 0.0 UniRef50_C8NZJ2 DNA polymerase III subunit alpha n=1 Tax=Erysipe... 893 0.0 UniRef50_B5JLP8 DNA polymerase III, alpha subunit subfamily, put... 891 0.0 UniRef50_D1VJQ4 DNA polymerase III, alpha subunit n=1 Tax=Franki... 890 0.0 UniRef50_P74750 Ssp dnaE intein (Fragments) n=29 Tax=Cyanobacter... 890 0.0 UniRef50_Q7WHW8 Error-prone DNA polymerase n=12 Tax=Proteobacter... 890 0.0 UniRef50_Q63XR8 Error-prone DNA polymerase n=34 Tax=Proteobacter... 890 0.0 UniRef50_C7R3Y6 DNA polymerase III, alpha subunit n=1 Tax=Jonesi... 887 0.0 UniRef50_Q8KTR8 DNA polymerase alpha subunit n=1 Tax=Candidatus ... 887 0.0 UniRef50_Q1AUQ9 DNA polymerase III, alpha subunit n=1 Tax=Rubrob... 881 0.0 UniRef50_D0IVK9 DNA polymerase III, alpha subunit n=5 Tax=cellul... 879 0.0 UniRef50_B9JWL2 Error-prone DNA polymerase n=34 Tax=Bacteria Rep... 878 0.0 UniRef50_Q28S37 DNA polymerase III alpha subunit n=10 Tax=Bacter... 878 0.0 UniRef50_A1BA11 DNA polymerase III, alpha subunit n=6 Tax=Alphap... 877 0.0 UniRef50_Q21LY9 Error-prone DNA polymerase n=12 Tax=Proteobacter... 873 0.0 UniRef50_A9FIY0 DNA polymerase III, alpha subunit n=1 Tax=Sorang... 872 0.0 UniRef50_B5EJ94 DNA polymerase III, alpha subunit n=3 Tax=Acidit... 871 0.0 UniRef50_C3M9Z5 Error-prone DNA polymerase n=28 Tax=cellular org... 871 0.0 UniRef50_D0WMM2 Putative DNA polymerase III dnae2 n=1 Tax=Actino... 866 0.0 UniRef50_UPI00016C4B8A DNA polymerase III alpha subunit n=1 Tax=... 866 0.0 UniRef50_B2UJ29 Error-prone DNA polymerase n=70 Tax=Betaproteoba... 865 0.0 UniRef50_A3QER8 DNA polymerase III, alpha subunit n=3 Tax=Gammap... 863 0.0 UniRef50_Q6MQS6 Error-prone DNA polymerase n=1 Tax=Bdellovibrio ... 862 0.0 UniRef50_C5BVF1 DNA polymerase III, alpha subunit n=3 Tax=Actino... 861 0.0 UniRef50_Q6M7C6 Error-prone DNA polymerase n=7 Tax=Bacteria RepI... 859 0.0 UniRef50_C0W389 DNA-directed DNA polymerase n=1 Tax=Actinomyces ... 858 0.0 UniRef50_B0T091 DNA polymerase III, alpha subunit n=1 Tax=Caulob... 856 0.0 UniRef50_B2SI43 Error-prone DNA polymerase n=31 Tax=Gammaproteob... 855 0.0 UniRef50_C5CQX7 DNA polymerase III, alpha subunit n=2 Tax=Comamo... 854 0.0 UniRef50_B4W721 DNA polymerase III, alpha subunit subfamily, put... 849 0.0 UniRef50_Q5LVN0 Error-prone DNA polymerase n=30 Tax=Proteobacter... 848 0.0 UniRef50_C9NCC1 DNA polymerase III, alpha subunit n=19 Tax=Strep... 846 0.0 Sequences not found previously or not previously below threshold: >UniRef50_Q8X8X5 DNA polymerase III subunit alpha n=288 Tax=cellular organisms RepID=DPO3A_ECO57 Length = 1160 Score = 1658 bits (4294), Expect = 0.0, Method: Composition-based stats. Identities = 1158/1160 (99%), Positives = 1159/1160 (99%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA Sbjct: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW Sbjct: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 180 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES Sbjct: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 180 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM Sbjct: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 Query: 241 RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKEGL 300 RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKEGL Sbjct: 241 RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKEGL 300 Query: 301 EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360 EERLAFLFPDEEER+KRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP Sbjct: 301 EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360 Query: 361 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD Sbjct: 361 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420 Query: 421 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQ 480 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQ Sbjct: 421 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQ 480 Query: 481 LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQ 540 LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQ Sbjct: 481 LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQ 540 Query: 541 FDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDML 600 FDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDML Sbjct: 541 FDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDML 600 Query: 601 QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE 660 QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE Sbjct: 601 QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE 660 Query: 661 ISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM 720 ISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM Sbjct: 661 ISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM 720 Query: 721 AKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA 780 AKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA Sbjct: 721 AKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA 780 Query: 781 EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG 840 EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG Sbjct: 781 EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG 840 Query: 841 VGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMN 900 VGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMN Sbjct: 841 VGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMN 900 Query: 901 SLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLY 960 SLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLY Sbjct: 901 SLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLY 960 Query: 961 LTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLD 1020 LTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLD Sbjct: 961 LTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLD 1020 Query: 1021 DRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKY 1080 DRSGRLEVMLFTDALDKYQ LLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKY Sbjct: 1021 DRSGRLEVMLFTDALDKYQHLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKY 1080 Query: 1081 ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSD 1140 ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSD Sbjct: 1081 ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSD 1140 Query: 1141 RLLNDLRGLIGSEQVELEFD 1160 RLLNDLRGLIGSEQVELEFD Sbjct: 1141 RLLNDLRGLIGSEQVELEFD 1160 >UniRef50_P52022 DNA polymerase III subunit alpha n=118 Tax=Gammaproteobacteria RepID=DPO3A_VIBCH Length = 1159 Score = 1547 bits (4006), Expect = 0.0, Method: Composition-based stats. Identities = 882/1160 (76%), Positives = 1014/1160 (87%), Gaps = 1/1160 (0%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS+P+F+HLR+HSD+SM+DGL+K PLVKK AA+GMPA+A+TDFTNLCGLVKFY H Sbjct: 1 MSDPKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNC 60 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 G+KPI+GADF +Q + GDELT LT+LA NN GY+NLTLLISKAY RG+ P+ID+ W Sbjct: 61 GVKPIIGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAW 120 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 180 L+E EGLI+LSGG+ G+VGR+LL+GN V+ C+ FY+ HF D ++LELIRTGR DEES Sbjct: 121 LVEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEES 180 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 YLH A+++AE LPVVATN+V FI F+AHEIRVAIHDG+TL+DP+RP+NYSP+QY+ Sbjct: 181 YLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYL 240 Query: 241 RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKEGL 300 RSE EMCELFADIPEALAN+VEIAKRCNVTVRLGEYFLP FPTG M+ ED+LV +++EGL Sbjct: 241 RSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTGGMAIEDFLVMKSREGL 300 Query: 301 EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360 EERL FLFPD E R KRRPEYDERL+ EL VINQMGFPGYFLIVMEFIQWSKDN +PVGP Sbjct: 301 EERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 360 Query: 361 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420 GRGSGAGSLVAYALKITDLDPLE+DLLFERFLNPERVSMPDFDVDFCM+KRDQVI+HVA+ Sbjct: 361 GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420 Query: 421 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQ 480 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHP+GFVDRISKL+PPDPGMTL KAF AEP Sbjct: 421 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFIAEPA 480 Query: 481 LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQ 540 L E+Y+ADEEVK LID R LEG TRNAGKHAGGVVI+PT ITDFAP+YCD EG PVTQ Sbjct: 481 LQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPVTQ 540 Query: 541 FDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDML 600 FDK+DVE AGLVKFDFLGLRTLTII+WAL ++N R K G+PP+ I AIPLDD +SF L Sbjct: 541 FDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFRNL 600 Query: 601 QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE 660 Q ++TTAVFQLESRGMK+LIKRLQPDCFED+IALVALFRPGPLQSGMVDNFIDRKHGRE Sbjct: 601 QDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREA 660 Query: 661 ISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM 720 ISYPD +WQHESLK +LEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM Sbjct: 661 ISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM 720 Query: 721 AKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA 780 AKQR+VF EGAEKNG++ ELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK HYPA Sbjct: 721 AKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPA 780 Query: 781 EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG 840 EFMAAVMTADMDNTEKVVGLVDEC MGL +LPPDINSGLY F+V+D+G IVYGIGAIKG Sbjct: 781 EFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDDNGAIVYGIGAIKG 840 Query: 841 VGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMN 900 VGEGPIEAI+EARNKGGYF++LFD CAR D KK+N+RV+EKLI++GA DRLGPHRAA+M Sbjct: 841 VGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLGPHRAAMMA 900 Query: 901 SLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLY 960 S+ DA++AA QH +AEA GQADMFGVL + PE++EQ Y WPE+V L+GERETLGLY Sbjct: 901 SVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLEGERETLGLY 960 Query: 961 LTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLD 1020 LTGHP+++YLKE+ +Y RL + PT R + +T AGLV+AARVM TKRG RIG+ TLD Sbjct: 961 LTGHPVDEYLKELTKYTSC-RLNEAAPTRRDQSLTVAGLVIAARVMTTKRGTRIGLMTLD 1019 Query: 1021 DRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKY 1080 DRSGR+EVML+++ALD+Y + LEKD+IL+VSGQVSFDDF+GGLKM+AREVMD+ AREK+ Sbjct: 1020 DRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGGLKMSAREVMDLGSAREKF 1079 Query: 1081 ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSD 1140 ARGL+IS+ QID Q R LEPHR+GT+PV++YYQR DARARL G WRV+PSD Sbjct: 1080 ARGLSISILQSQIDQQFFERFSHILEPHRAGTVPVNVYYQRPDARARLTLGTEWRVTPSD 1139 Query: 1141 RLLNDLRGLIGSEQVELEFD 1160 LL++L+ L+G +QVELEF+ Sbjct: 1140 TLLDELKQLLGHDQVELEFN 1159 >UniRef50_Q9HXZ1 DNA polymerase III subunit alpha n=46 Tax=Gammaproteobacteria RepID=DPO3A_PSEAE Length = 1173 Score = 1403 bits (3633), Expect = 0.0, Method: Composition-based stats. Identities = 685/1172 (58%), Positives = 864/1172 (73%), Gaps = 22/1172 (1%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHLR+H+++S++DGL + PL K A LGMPA+A+TD +N+C LVKFY GAGIKPI Sbjct: 5 FVHLRLHTEFSLVDGLVRVKPLAKAVAGLGMPAVAVTDQSNMCSLVKFYKTAMGAGIKPI 64 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 GAD + L+ L++LA N GY+NLT LIS+ + G II+RDW+ E Sbjct: 65 CGADIWLASREEDGPLSRLSLLAMNAKGYRNLTELISRGWSEGQRNGEIIIERDWVKEAA 124 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 185 EGLI LS + G++G +LL G A + + + E FP+R+++E+ RT R ++E +LHAA Sbjct: 125 EGLIALSAAKEGEIGHALLDGEEAKAEALLREWMEVFPERFYVEVQRTSRVNDEEHLHAA 184 Query: 186 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 245 V LA P+VATNDVRFI DF+AHE RV I +G TLDDP+RPR YS QQY++S E Sbjct: 185 VALASRCNAPLVATNDVRFIKQEDFEAHETRVCIGEGRTLDDPRRPRTYSDQQYLKSPAE 244 Query: 246 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGD-MSTEDYLVKRAKEGLEERL 304 M ELF+D+PEAL NTVEIAKRCN+ V+LG+YFLP FPT + M +DYL + EGLEERL Sbjct: 245 MAELFSDLPEALENTVEIAKRCNIEVQLGKYFLPDFPTPNGMGIDDYLRHASFEGLEERL 304 Query: 305 AFLFP-DEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRG 363 L P D + +R Y +RL EL +I QMGFPGYFLIVM+FI+W+K+NGVPVGPGRG Sbjct: 305 EVLLPKDTPDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIKWAKNNGVPVGPGRG 364 Query: 364 SGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYG 423 SGAGSLVAY LKITDLDPL +DLLFERFLNPER+SMPDFDVDFCME RD+VI++VAD YG Sbjct: 365 SGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFCMEGRDRVIDYVADAYG 424 Query: 424 RDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPE 483 R+AVSQIITFGTMAAKAV+RDV RV G YG DR+SK+IP + GMTL KA+E E L + Sbjct: 425 RNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLDKAYEQEEMLRD 484 Query: 484 IYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDK 543 ++DEE + +MA KLEG+TR GKHAGGVVIAPTK+TDF+P+ CDEEG VTQFDK Sbjct: 485 FLKSDEEAAEIWEMALKLEGITRGTGKHAGGVVIAPTKLTDFSPIACDEEGGGLVTQFDK 544 Query: 544 SDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRS 603 DVE AGLVKFDFLGLRTLTII WA+E+IN+ +AK G P++I IPLDDK ++ +LQ++ Sbjct: 545 DDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKGLEPVNIDFIPLDDKPTYSLLQKA 604 Query: 604 ETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISY 663 ETTAVFQLESRGMK+LIK+L+PDC ED+IALVALFRPGPLQSGMVD+FI+RKHGR E+SY Sbjct: 605 ETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGRAELSY 664 Query: 664 PDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQ 723 P +Q+ L+PVL+PTYGIILYQEQVMQIAQV++GYTLGGADMLRRAMGKKKPEEMAKQ Sbjct: 665 PHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPEEMAKQ 724 Query: 724 RSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFM 783 R F EG + NGI+A+LA IFDLVEKFAGYGFNKSHSAAY LVSYQT WLK H+PA FM Sbjct: 725 RGGFIEGCKNNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHFPAPFM 784 Query: 784 AAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGE 843 AAV+TADM NT+KVV L++EC M L+I+ PD+N+ + F V+DDG IVYG+GAIKGVGE Sbjct: 785 AAVLTADMQNTDKVVTLIEECRHMKLRIVAPDVNNSEFRFTVDDDGRIVYGLGAIKGVGE 844 Query: 844 GPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPH--------- 894 GP+EAI E R +GG F LFD C R D K++N+R LE LI +GA DRLGPH Sbjct: 845 GPVEAITECRAEGGPFNTLFDFCDRVDLKRINKRTLEALIRAGALDRLGPHYHDELKAYQ 904 Query: 895 ------RAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPE-QIEQSYASCQPWPEQ 947 RA L+ ++ +A++AA+Q A++ G D+FG + EPE + ++ + + Sbjct: 905 ATVDLNRAVLLAAMEEAIQAAEQTARSHDSGHMDLFGGVFAEPEADVYANHRKVKELTLK 964 Query: 948 VVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMV 1007 L GE++TLGLYLTGHPI++Y E+ R+ R+ ++ P + + AGL+V RVM Sbjct: 965 ERLKGEKDTLGLYLTGHPIDEYEGEVRRFAR-QRIVELKPARDTQTV--AGLIVNLRVMK 1021 Query: 1008 TKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTA 1067 K+G+++G TLDDRSGR+E LF++A Q LL+ D +++V G+VS DDFSGGL++ A Sbjct: 1022 NKKGDKMGFVTLDDRSGRIEASLFSEAFAAAQSLLQTDALVVVEGEVSQDDFSGGLRLRA 1081 Query: 1068 REVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARAR 1127 + VM ++EAR A L + L + L L + HR G+ P+ L Y ADA+A Sbjct: 1082 KRVMSLEEARTGLAESLRMKLHADLLKGDRLRWLGELFNRHR-GSCPITLDYTSADAKAL 1140 Query: 1128 LRFGATWRVSPSDRLLNDLRGLIGSEQVELEF 1159 L+FG +WRV P+D L+ LR G + V L + Sbjct: 1141 LQFGESWRVDPADDLIQALRDQFGRDNVFLNY 1172 >UniRef50_C5BQZ9 DNA polymerase III, alpha subunit n=10 Tax=Gammaproteobacteria RepID=C5BQZ9_TERTT Length = 1171 Score = 1377 bits (3565), Expect = 0.0, Method: Composition-based stats. Identities = 672/1168 (57%), Positives = 863/1168 (73%), Gaps = 17/1168 (1%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 FVHL+V +++S++D + + PL+++ A MPA ITD N GL+KFY A G+GIKP Sbjct: 2 NFVHLKVRTEFSLVDSIIRVKPLLQRVQAEAMPACGITDLHNFFGLLKFYRAAQGSGIKP 61 Query: 65 IVGADFNVQCDLLGDELTHL-TVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIE 123 I GADF + D L T+ A N GY+N+T LIS+++Q G P ID WL Sbjct: 62 ICGADFRIHKAGDDDLHPPLITLYAMNLAGYKNITALISRSFQEGQSMGEPYIDESWLEP 121 Query: 124 LNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLH 183 +EG+I LSG + G++G+ L+ +E + + DR++LEL RTGR ++E +LH Sbjct: 122 HSEGVIALSGAKFGEIGQLLVTNKLDEAEEKLQQMMGIYRDRFYLELQRTGRENDELHLH 181 Query: 184 AAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSE 243 AV LA PVVATNDVRF+DS F+ HE RV I +G TLDDP+R R YS +QY RS Sbjct: 182 RAVGLAAKLDCPVVATNDVRFLDSDQFEVHEARVCIGEGRTLDDPRRERRYSDEQYFRST 241 Query: 244 EEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTE-DYLVKRAKEGLEE 302 EMCELFADIPEA+ NTVEIA+RCN+ + LG+YFLP++P + TE ++ K +EGL+ Sbjct: 242 AEMCELFADIPEAIENTVEIARRCNLDILLGKYFLPEYPIPEGLTENEFFEKICREGLDL 301 Query: 303 RLAFLFPDEE-ERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPG 361 RL + + L+RR YDERL+ EL +I QMGFPGYFLIVM+FIQW+KD+ +PVGPG Sbjct: 302 RLERILDTSAPDYLERRKVYDERLKFELDIIIQMGFPGYFLIVMDFIQWAKDHKIPVGPG 361 Query: 362 RGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADM 421 RGSGAGSLVAY LKITDLDPL++DLLFERFLNPERVSMPDFDVDFCME RD+VI +VAD Sbjct: 362 RGSGAGSLVAYVLKITDLDPLQYDLLFERFLNPERVSMPDFDVDFCMEDRDKVIGYVADN 421 Query: 422 YGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQL 481 YGRDAVSQIITFGTMAAKAV+RDV RV G YG D++SK+IPPD GMTL KA+E E L Sbjct: 422 YGRDAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKMIPPDVGMTLTKAYEQEEIL 481 Query: 482 PEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQF 541 E + D + + + DMA +LEGVTRN GKHAGGVVIAPTK+ DFAPLYCD+ G VTQF Sbjct: 482 REFLQNDGDGQEIWDMALQLEGVTRNVGKHAGGVVIAPTKLIDFAPLYCDDTGGGLVTQF 541 Query: 542 DKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQ 601 DK+DVE AGLVKFDFLGLRTLTII+WA+ MI+++R + GEPPLDI+AIPLDD +FDML+ Sbjct: 542 DKNDVEDAGLVKFDFLGLRTLTIIDWAVTMIDQQRTRLGEPPLDISAIPLDDPTTFDMLK 601 Query: 602 RSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEI 661 ++ETTAVFQLESRGMKDLIKRLQPD EDMIALVALFRPGPLQSGMVD+FI+RKHGR ++ Sbjct: 602 KAETTAVFQLESRGMKDLIKRLQPDNLEDMIALVALFRPGPLQSGMVDDFINRKHGRAQV 661 Query: 662 SYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMA 721 +YPD ++QH SL+P+LEPTYG+I+YQEQVMQIAQVL+GYTLGGAD+LRRAMGKKKPEEMA Sbjct: 662 AYPDAKYQHTSLQPILEPTYGVIVYQEQVMQIAQVLAGYTLGGADLLRRAMGKKKPEEMA 721 Query: 722 KQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAE 781 KQRS+FA+GA+ GI+ +LAMKIFDLVEKFAGYGFNKSHSAAYALVSYQT WLKAHYPA Sbjct: 722 KQRSIFADGAKGLGIDPDLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTAWLKAHYPAH 781 Query: 782 FMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGV 841 FMAA M++DMD T+KVV ++EC M L +LPPD+N G + F V++D I+YG+GAIKG+ Sbjct: 782 FMAATMSSDMDKTDKVVTFIEECRTMKLNLLPPDVNRGEFQFTVDEDANIIYGLGAIKGL 841 Query: 842 GEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGP------HR 895 GEGP+E+I+EAR G F++LFD CAR D ++LN+R LE L+ SGA D LGP R Sbjct: 842 GEGPVESILEARKT-GPFKDLFDFCARVDGRRLNKRALEALVRSGALDNLGPGKDIDYDR 900 Query: 896 AALMNSLGDALKAADQHAKAEAIGQADMFGV---LAEEPEQIEQSYASCQPWPEQVVLDG 952 A + ++ +A+KAA+Q + G +D+FG ++E+ + + Q + + W + L+G Sbjct: 901 AVMHIAIAEAVKAAEQKSANANAGISDLFGEVVPVSEDRQSVYQDFHRVRRWSMKERLNG 960 Query: 953 ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012 E+ETLGLYLTGHPI++Y KE+ +V R+ + + + + AGLVVA RVM TKRG+ Sbjct: 961 EKETLGLYLTGHPIDEYDKELSNFVSS-RIFHLKAEKNKQTV--AGLVVAFRVMKTKRGD 1017 Query: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072 + TLDDR+GR+EV +F+DA ++ L KD +L+++GQVSFDD+SGGLKM A E+ D Sbjct: 1018 NMAFVTLDDRTGRIEVAVFSDAYSDNREKLVKDALLVITGQVSFDDYSGGLKMRADEITD 1077 Query: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRS-GTIPVHLYYQRADARARLRFG 1131 ++EAR+ R + + + + R+ ++ + G + + YQ+A A Sbjct: 1078 LNEARQASVRAIKLRWRSEALPLDYEKQFRELVKSYSGAGNCALIVDYQKAGVSATYTLS 1137 Query: 1132 ATWRVSPSDRLLNDLRGLIGSEQVELEF 1159 W V+P D L+ L+ L G++ VEL + Sbjct: 1138 QEWNVAPGDELVESLKMLYGNKNVELVY 1165 >UniRef50_A1AQQ6 DNA polymerase III, alpha subunit n=12 Tax=Deltaproteobacteria RepID=A1AQQ6_PELPD Length = 1184 Score = 1359 bits (3517), Expect = 0.0, Method: Composition-based stats. Identities = 498/1188 (41%), Positives = 728/1188 (61%), Gaps = 45/1188 (3%) Query: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61 + FVHL VH+ YS++DG + L+ KA A MPALAITD N+ G V+FY AG Sbjct: 11 PQAPFVHLHVHTQYSLLDGAIRLEDLIAKAKAHNMPALAITDHGNMFGAVEFYLKCKKAG 70 Query: 62 IKPIVGADFNVQCDL---------LGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAA 112 IKP++G + + D + + HL +L N GY+NL+ L S Y+ G+ Sbjct: 71 IKPLIGCEVYIAPDSRFSRESTRGISEAAYHLILLCENMQGYRNLSYLTSAGYKEGF-YY 129 Query: 113 GPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172 P IDR+ L E +EGLI LS G+V R E +Y + FPDRY++EL Sbjct: 130 RPRIDRELLQEHSEGLIALSACLKGEVAMQCFRDRMDDALETARWYSQLFPDRYYIELQE 189 Query: 173 TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 P+++ +E+A LP+VATND +++ D AHE+ + I G T+ DP + Sbjct: 190 NTLPEQDVVNKRLMEVAATLQLPLVATNDCHYLNREDARAHEVLLCIQTGKTMSDPSHMK 249 Query: 233 NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRL--GEYFLPQF-PTGDMSTE 289 + + Y++S EEM F PEA++NT++IA RC++ + L GEY P F P + + Sbjct: 250 FSAEEFYVKSPEEMVAAFGYAPEAVSNTLKIADRCDLKLPLDTGEYHFPHFDPPAGKNHD 309 Query: 290 DYLVKRAKEGLEERLAFLFPDEEE-RLKRRPEYDERLETELQVINQMGFPGYFLIVMEFI 348 D L + A +GL+ER+ + + L+RR Y ERL+ EL+ I +M FP YFLIV +FI Sbjct: 310 DMLEELAVQGLKERMVTILAKYPDMSLERRQAYFERLQIELKCIREMQFPAYFLIVSDFI 369 Query: 349 QWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCM 408 W+K+ G+PVGPGRGS AGSLVAYA++ITDLDPL ++LLFERFLNPER++MPD DVDFC Sbjct: 370 TWAKNKGIPVGPGRGSAAGSLVAYAIRITDLDPLPYNLLFERFLNPERITMPDIDVDFCQ 429 Query: 409 EKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG 468 ++R++VI++V + YGR+ V QIITFGTM AKAV+RDVGR L YG VDRI+KLIP D Sbjct: 430 DRREEVIQYVIEKYGRERVCQIITFGTMKAKAVVRDVGRALNMTYGDVDRIAKLIPDDLK 489 Query: 469 MTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPL 528 MTLAKA + EPQL E+ E D +V+ L+D A LEG+TR+A HA GVV+AP ++ +F P+ Sbjct: 490 MTLAKALKQEPQLNEMAERDPQVRDLLDTALCLEGLTRHASTHAAGVVVAPRQLEEFLPV 549 Query: 529 YCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAA 588 Y D++ TQ+ VE GLVKFDFLGL+ LT+I A+ ++ + +P DI Sbjct: 550 YKDQKTGSINTQYSMKYVEMVGLVKFDFLGLKNLTVIENAVHLVRAGK----DPDFDITR 605 Query: 589 IPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMV 648 + DD +S+D++ TT +FQLES GMK+++ +L+P CFED+IA AL+RPGPL GMV Sbjct: 606 LRDDDSESYDLISSGNTTGIFQLESSGMKEMLVKLKPSCFEDVIAACALYRPGPLGCGMV 665 Query: 649 DNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADML 708 D FI+RKHGR+++ Y L+P+L+ TYG+I+YQEQVMQI++ L+GY+LG AD+L Sbjct: 666 DEFIERKHGRQKVVY-----DLPQLEPILKDTYGVIVYQEQVMQISRTLAGYSLGRADLL 720 Query: 709 RRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVS 768 RRAMGKK P MAK++ F EGA+ GI+ + A IFD + KFA YGFNKSHSAAYAL++ Sbjct: 721 RRAMGKKDPAVMAKEKEPFLEGAKAQGIDPKKAEAIFDQMAKFAEYGFNKSHSAAYALIA 780 Query: 769 YQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDD 828 YQT WLK+HYP EF+AA++T DMD+T+KV+ +++C G+++LPPD+N F V + Sbjct: 781 YQTAWLKSHYPVEFLAALLTCDMDSTDKVIKNINDCREQGIEVLPPDVNKSGLTFTVVGN 840 Query: 829 GEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAF 888 + +G+GA+KGVG G +EAI+EAR G F++++D C R D ++ N++VLE LI GAF Sbjct: 841 -SMRFGLGAVKGVGTGAVEAILEARQD-GPFKDVYDFCERVDMRRSNKKVLEALIKCGAF 898 Query: 889 DRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIE-QSYASCQPWPEQ 947 D RAA+M L A+ + + A Q +FG W ++ Sbjct: 899 DSTNAPRAAMMEGLETAMNFGQRIQQERASAQVSLFGDDEVARSGGNGHRLPDVPEWHDK 958 Query: 948 VVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMV 1007 L E+E LG +TGHP+++Y+ +I+R + V + + G I G+V + + + Sbjct: 959 EKLALEKEALGFLITGHPLDRYVDDIKR-LNCVEISRLTEQADGGEIRVCGIVSSLKEIT 1017 Query: 1008 TKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMT- 1066 TK+G+R+G T++D +G +EV +F+D LL+ D L++ G++ + + + Sbjct: 1018 TKKGDRMGFVTIEDLTGSVEVTVFSDIYTSAVSLLKGDDPLLIDGKLERGEKGAKILVRG 1077 Query: 1067 ---------------AREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSG 1111 A ++ + + R + + + +L + + L L+ +E H+ G Sbjct: 1078 QSEGASEWQLKQRGPAGDIRHLLDVRAQSTKRVVFTLLTDETPPEHLEVLKGIIERHQ-G 1136 Query: 1112 TIPVHLYYQRAD-ARARLRFGATWRVSPSDRLLNDLRGLIGSEQVELE 1158 ++P + + +R+ L + V+ SD L ++ L G E Sbjct: 1137 SVPTEIQFLIPQRSRSTLALPESMNVAASDDLRLEVERLFGYNAASFE 1184 >UniRef50_B5E8T0 DNA polymerase III, alpha subunit n=6 Tax=Deltaproteobacteria RepID=B5E8T0_GEOBB Length = 1156 Score = 1355 bits (3508), Expect = 0.0, Method: Composition-based stats. Identities = 489/1172 (41%), Positives = 720/1172 (61%), Gaps = 30/1172 (2%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M FVHL +HS YS++DG + L+KK MPA+A+TD N+ G ++FY Sbjct: 1 MDSTNFVHLHLHSQYSLLDGAIRIGDLLKKVKECHMPAVAMTDHGNMFGTLEFYLKCKDK 60 Query: 61 GIKPIVGADFNVQCDLL----------GDELTHLTVLAANNTGYQNLTLLISKAYQRGYG 110 G+KPI+G++ + HL +L N TG++NL+ L+S Y+ G+ Sbjct: 61 GVKPILGSEVYIAPQDRFLKQAPSSPGQASSYHLILLCENMTGFKNLSYLVSAGYKEGF- 119 Query: 111 AAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170 P ID++ L++ EGLI+LS G+V R ++Y E+FP Y++EL Sbjct: 120 YRRPRIDKELLLKHKEGLIVLSACLQGEVAYLAGRNKMDEARAAASWYAENFPGSYYIEL 179 Query: 171 IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230 P+++ +E+A LP+VATND +++ D AHEI + I G T+ DP Sbjct: 180 QENKLPEQDIANRRLMEIAREMDLPLVATNDCHYLNREDARAHEILLCIQTGKTMSDPTH 239 Query: 231 PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMST-E 289 + Y+++ +EM + F PEA+ NTV+IA+RCN+ Y+ P + + T + Sbjct: 240 MAFSVDEFYVKTPQEMAQAFHYAPEAIENTVKIAERCNLEFDFKTYYFPAYEAPEGETLD 299 Query: 290 DYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQ 349 L + A GL ERL + ++ Y RL EL I QMGFPGYFLIV +FI Sbjct: 300 QQLEREATVGLVERLKKIRIKYNLTEEQEQAYHARLRIELDCIKQMGFPGYFLIVADFIN 359 Query: 350 WSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCME 409 W+KD+G+PVGPGRGS AGSLVA+ ++ITD+DP+ ++LLFERFLNPER+SMPD DVDFC + Sbjct: 360 WAKDHGIPVGPGRGSAAGSLVAFCIRITDIDPMPYNLLFERFLNPERISMPDIDVDFCQD 419 Query: 410 KRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGM 469 +R++VI+++ + YGR+ V QIITFGTMAA+ VIRDVGR L +G VDRI+KL+P G+ Sbjct: 420 RREEVIQYMVEKYGREKVCQIITFGTMAARGVIRDVGRALDLTFGEVDRIAKLVPEVLGI 479 Query: 470 TLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLY 529 TL KA E EP+L E+ AD +VK ++ +A +LEG+ R+A HA G+V+AP ++ +F P+Y Sbjct: 480 TLDKALEQEPKLKELMAADPKVKEVMTVALRLEGLARHASTHAAGLVVAPRQMEEFCPVY 539 Query: 530 CDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAI 589 D++ TQ+ VE GLVKFDFLGL+ LT+I+ A + I + +P DI + Sbjct: 540 KDQKTGSLTTQYSMKYVEKIGLVKFDFLGLKNLTVIDNACKHIRNGK----DPNFDITLL 595 Query: 590 PLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVD 649 DD++S+ +LQ TT VFQLES GMK+L+ +L+P CFED+IA+ AL+RPGPL SGMVD Sbjct: 596 RDDDEESYKLLQAGNTTGVFQLESSGMKELLVKLKPSCFEDIIAVCALYRPGPLGSGMVD 655 Query: 650 NFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLR 709 +FI+RKHGR++ Y L+PVL+ TYG+I+YQEQVMQI++ L+GY+LGGAD+LR Sbjct: 656 DFIERKHGRKQTVYDL-----PQLEPVLKDTYGVIVYQEQVMQISRSLAGYSLGGADLLR 710 Query: 710 RAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSY 769 RAMGKK E+MAK+R F EG+EK G++ + IFDL+ KFA YGFNKSHSAAYALV+Y Sbjct: 711 RAMGKKDAEQMAKERDKFLEGSEKLGLDGKKCAAIFDLMAKFAEYGFNKSHSAAYALVAY 770 Query: 770 QTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDG 829 QT +LKAHYP EFMAA++T DM NT+KV+ + +C MG+++LPPDIN F V D Sbjct: 771 QTAFLKAHYPVEFMAALLTEDMGNTDKVIKSIGDCREMGIEVLPPDINESDRSFRVL-DK 829 Query: 830 EIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFD 889 + +G+GA+K VGEG IEAIIEAR F++LFD C R D +++N+RV+E LI GAFD Sbjct: 830 AMRFGLGAVKNVGEGAIEAIIEARGD-EPFKDLFDFCERVDLRRVNKRVIEALIKCGAFD 888 Query: 890 RLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLA--EEPEQIEQSYASCQPWPEQ 947 G R+ LM L DA A + + QA +FG W E+ Sbjct: 889 CTGAKRSQLMAGLEDAASAGQRVQQERESAQASLFGAAEIVRGANGGGNRLPEIPEWDEK 948 Query: 948 VVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMV 1007 L E+E +G ++TGHP+++Y+ ++ R+ V + + + G+ + + ++ Sbjct: 949 YRLGCEKEAIGFFITGHPLDRYVADMRRF-SSVDCSTILDAKEKSEVRICGVPASVKELI 1007 Query: 1008 TKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTA 1067 TK+G+R+ L+D G +EV++F + K ++L D + V+G V + G K+ A Sbjct: 1008 TKKGDRMAFLALEDLVGSVEVVVFPETYAKCSEVLRGDDPIHVTGTVELSEK--GAKVMA 1065 Query: 1068 REVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRAD-ARA 1126 +++ + + E+ R + ++ +++D+ L L+ + ++ G L+ + +R Sbjct: 1066 SDIVLLRDLVERETRKVNFTIDAKEVDEGKLKTLKDIISRYQ-GICRSFLHLDIENSSRV 1124 Query: 1127 RLRFGATWRVSPSDRLLNDLRGLIGSEQVELE 1158 ++ ++VS S+ L ++ L G V E Sbjct: 1125 TIKLPDVYKVSASEELTVEVSNLFGYNAVSFE 1156 >UniRef50_A4J6X6 DNA polymerase III catalytic subunit, DnaE type n=28 Tax=Bacteria RepID=A4J6X6_DESRM Length = 1225 Score = 1353 bits (3502), Expect = 0.0, Method: Composition-based stats. Identities = 479/1185 (40%), Positives = 706/1185 (59%), Gaps = 65/1185 (5%) Query: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61 E +FVHL VH++YS++DG ++ + K+A GM +LAITD + G+V FY H G Sbjct: 8 PENQFVHLHVHTEYSLLDGASRINQMAKQAKESGMNSLAITDHGCMFGVVDFYKVCHKEG 67 Query: 62 IKPIVGADFNVQCDL-------LGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGP 114 +KPI+G + V L D+ HL +LA N GY+NL L+S Y G+ P Sbjct: 68 VKPILGCEVYVAPRRRIDRTPKLDDQPNHLVLLAENQEGYKNLLKLVSLGYTEGF-YYKP 126 Query: 115 IIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRT 173 +D++ L ++GLI LS G+V +L + Y + F D +FLEL Sbjct: 127 RVDKELLQRYHKGLIALSACLAGEVADKILGSQPEKARQAAREYVDIFGKDNFFLELQDH 186 Query: 174 GRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRN 233 G ++ + +++A+ +P+VATNDV ++ + ++ + I G +++ P R + Sbjct: 187 GYQEQRTVNRELLKIAKELQIPLVATNDVHYLKREHAEIQDVLLCIQTGKSINTPGRMKF 246 Query: 234 YSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMS-TEDYL 292 S + Y++S EM LFA+IP+AL+NT+ IA+RC V + G+Y LP F + S YL Sbjct: 247 ESQEMYLKSPHEMNLLFAEIPDALSNTLRIAERCQVDLEFGKYHLPYFTVPEESSPAQYL 306 Query: 293 VKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSK 352 ++ EG +R ERLE EL VI +MG+ YFLIV +FI +++ Sbjct: 307 REKCLEGAIKRYGHC----------SGPVQERLEYELNVIGKMGYDEYFLIVWDFIHYAR 356 Query: 353 DNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRD 412 G+ VGPGRGS AGS+V+YAL IT++DPL++ LLFERFLNPER+SMPD D+DF E+R Sbjct: 357 QKGIAVGPGRGSAAGSIVSYALGITNIDPLKYGLLFERFLNPERISMPDIDIDFDYERRG 416 Query: 413 QVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA 472 +VIE++ YG D V+QIITFGTMAA+A IRDVGR L PYG VDR++KL+P + +T+A Sbjct: 417 EVIEYIVQKYGTDRVAQIITFGTMAARAAIRDVGRALDMPYGDVDRVAKLVPTELNITIA 476 Query: 473 KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDE 532 KA + P L Y+ D EVK L+D A LEG+ R+A HA GVVI+ + ++ PL Sbjct: 477 KALTSSPDLKAAYDQDPEVKRLVDTAAALEGMPRHASTHAAGVVISREPLVEYLPLSKTS 536 Query: 533 EGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLD 592 +G TQF + VE GL+K D LGLR LT+I+ + +I + + E LDI IPLD Sbjct: 537 DG-LVTTQFPMTTVEELGLLKMDLLGLRNLTVISETVNLIEQIK----ETKLDINTIPLD 591 Query: 593 DKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFI 652 D+ +FDML R E VFQLES GM+++++ L+P+ FED++ALVAL+RPGPL SGMV++FI Sbjct: 592 DQATFDMLTRGEGVGVFQLESSGMRNILRELKPNAFEDIVALVALYRPGPLGSGMVEDFI 651 Query: 653 DRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAM 712 RKHG+ ++ Y H L+P+L+ TYG+ILYQEQVM IA++++GY+LG AD LR+AM Sbjct: 652 QRKHGQNKVDY-----FHPDLEPILKETYGVILYQEQVMMIARIMAGYSLGQADALRKAM 706 Query: 713 GKKKPEEMAKQRSVFAE----------------GAEKNGINAELAMKIFDLVEKFAGYGF 756 GKK + M R F GA G + +LA K+FDL+E FAGYGF Sbjct: 707 GKKIAKIMGMHRDWFINGSTLDDKGKPLKNPIPGAVARGYSRQLAEKMFDLMEYFAGYGF 766 Query: 757 NKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDI 816 NKSHSAAYALVSYQT +LKA+YP E+MAA++T+ DNT+KVV +DEC RMG+++LPPDI Sbjct: 767 NKSHSAAYALVSYQTAYLKANYPVEYMAALLTSVRDNTDKVVLYIDECRRMGIQVLPPDI 826 Query: 817 NSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNR 876 N +F +G I +G+ A+K VG G ++ II+ R K G F +DLC R DT+ NR Sbjct: 827 NLSRENFTAA-NGAIRFGMAAVKNVGWGAVQEIIQIREKKGPFTGFYDLCGRLDTRIANR 885 Query: 877 RVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQI-E 935 RVLE LI +GA D G R+ L+ L L+ A + + GQ +F +++E P Q+ E Sbjct: 886 RVLESLIKAGALDAFGY-RSQLLAGLDTGLEHAARSQRDREQGQVSLFDLMSESPAQVME 944 Query: 936 QSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVIT 995 + L+ E+E LGLY++GHP++++ + + R+ + G + Sbjct: 945 LKLPHVPRLTSRQQLEMEKEALGLYISGHPLSEF-GWLLDQLEVQRVVHLAELPDGNNLL 1003 Query: 996 AAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVS 1055 AG++ + + +++G+ + TL+D +G EV++F ++ LL+ L++ G++ Sbjct: 1004 VAGIISTIKRITSRKGDPMAFLTLEDLTGSCEVVVFPQVYRRHFSLLDLKVPLLLKGKL- 1062 Query: 1056 FDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPV 1115 ++ K+ A E+ ++ + L + L++ I +L RL G+ PV Sbjct: 1063 -NNNGEETKILAEEIQPLENVTCE----LWLRLSENVISKELEERL-----ISHPGSSPV 1112 Query: 1116 HLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSEQVELEFD 1160 L+Y + R +++ VS S L L L+G + + L F+ Sbjct: 1113 FLFY--PEDRHKVQLEKE--VSLSLNLKRSLTSLLGEDNILLRFN 1153 >UniRef50_D0LJI6 DNA polymerase III, alpha subunit n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LJI6_HALO1 Length = 1174 Score = 1325 bits (3429), Expect = 0.0, Method: Composition-based stats. Identities = 488/1187 (41%), Positives = 710/1187 (59%), Gaps = 42/1187 (3%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS F HL +H+ YS++DG + L K LGM ++A+TD N+ G V Y A Sbjct: 1 MS--AFTHLHLHTQYSLLDGAIRVKDLFPKVLELGMDSVAVTDHGNMFGAVDLYTAAREH 58 Query: 61 GIKPIVGADFNVQCDLLGDE----LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPII 116 G+K I G + + D H+ +LA + GY+NL+ L S Y G+ P I Sbjct: 59 GVKMIFGCETYIAASDRFDRTNRRSYHMVLLAKDQVGYKNLSFLNSMGYLEGF-YYNPRI 117 Query: 117 DRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRTGR 175 D+ L E +EGLI +S G+V ++LL+ +A + Y++ F ++LE++ Sbjct: 118 DKKILREHSEGLIGMSACLGGEVAQTLLKQGTAEAEAVALEYQDIFGKGNFYLEMMGNQL 177 Query: 176 PDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYS 235 +++ ++ G+P+VATND ++ D AHEI ++I G T D KR R+ Sbjct: 178 EEQQQLNADLKRMSRKLGIPLVATNDCHYVSQQDAHAHEILLSIQTGKTTSDDKRLRHTV 237 Query: 236 PQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGD-MSTEDYLVK 294 ++++ EM F+D+PEA+ NTV+IA+RCNV + LG FLP + + MS E YL K Sbjct: 238 DSYFLKNAAEMEVDFSDVPEAMENTVDIARRCNVELDLGNTFLPNYKVPEGMSVESYLEK 297 Query: 295 RAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDN 354 +GLE R L E R +Y ERL EL VIN+MGFPGYFLIV +FI W+K++ Sbjct: 298 VVFDGLERRFREL--SEIGRSFDPDQYRERLRHELGVINKMGFPGYFLIVWDFINWAKEH 355 Query: 355 GVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQV 414 +PVGPGRGSGAGS VA+A++ITD+DPLEF LLFERFLNPERVSMPDFDVDFCM +RD+V Sbjct: 356 NIPVGPGRGSGAGSCVAWAMRITDIDPLEFKLLFERFLNPERVSMPDFDVDFCMNRRDEV 415 Query: 415 IEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP---DPGMTL 471 I++V YG V QI TF + A+ VIRD+ RV+ PY D+++KL+P + Sbjct: 416 IDYVKRKYGEKNVGQIATFHQLKARGVIRDIARVMELPYAEADKLAKLVPDPVGGKSPPV 475 Query: 472 AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCD 531 A E EP+L +Y D +++ L+D+A LEG+ R+ G HA GVVIA + ++ P + Sbjct: 476 RDAIEQEPELKRLYNEDPKMRDLLDVAASLEGLNRHVGMHAAGVVIAEDPLWEYVPCFRG 535 Query: 532 EEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPL 591 + G+ VTQF + E AGLVKFDFLGL+TLT+I+ A+ +IN++R GEP DI I Sbjct: 536 QNGE-IVTQFAMKEAEKAGLVKFDFLGLKTLTVIHTAVRLINEQREAAGEPLFDIDKIDK 594 Query: 592 DDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNF 651 D + M+ R +TT VFQLES G ++++ +L+PD ED++A VAL+RPGPL+ GMVD+F Sbjct: 595 GDPAVYKMISRGDTTGVFQLESSGFREILTKLKPDQLEDIVAAVALYRPGPLEGGMVDDF 654 Query: 652 IDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRA 711 I+RKHGR+ + YP H L+PVL TYG+I+YQEQVMQIAQVL+GY+LG AD+LRRA Sbjct: 655 IERKHGRKRVEYP-----HPDLEPVLRDTYGVIVYQEQVMQIAQVLAGYSLGRADLLRRA 709 Query: 712 MGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQT 771 MGKK + MAK++ F GA + G++++LA ++FDL+ FAGYGFN+SHSAAY +SYQT Sbjct: 710 MGKKNKDVMAKEKDGFVTGATERGVDSKLAEQVFDLMAFFAGYGFNRSHSAAYGWISYQT 769 Query: 772 LWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHV----ND 827 +LK HYP EFMA +M+ D DNT+ +V + E MGL + PD+N F V +D Sbjct: 770 AYLKHHYPHEFMAGLMSCDQDNTDNIVKFIAEARAMGLVVARPDVNESAADFTVVVGEDD 829 Query: 828 DGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGA 887 I +G+GA+KGVG+G +EAIIE RN+ F +++ C R D++K NRRV+E L+ SGA Sbjct: 830 TKRIRFGLGAVKGVGQGAVEAIIECRNQDEKFISIYEFCRRVDSQKCNRRVIEALVKSGA 889 Query: 888 FDRL----GPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEP-------EQIEQ 936 FD L G HRA + ++ A+++ Q + GQ +FG++A + + + Sbjct: 890 FDGLSEDAGLHRARVFATIEAAMESGAQAQRDRRSGQTSLFGLIAAPEGDSGATADGMPE 949 Query: 937 SYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITA 996 +Y + WP + +L E+E+LG Y++GHP+++Y ++ RY + Sbjct: 950 TYPEVEEWPAKELLAFEKESLGFYISGHPLDRYRADLTRYANATTTDFLEGKRPAGPAAV 1009 Query: 997 AGLVVAARVMVTKRGN-RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVS 1055 G+V A R T++G+ +I L+D +G+LEV++F ++ ++ L D ++ SG+V Sbjct: 1010 GGVVSAYRERPTRKGDGKIAFFQLEDATGQLEVIVFPKTFERVRETLVLDEPILCSGKV- 1068 Query: 1056 FDDFSG---GLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGT 1112 D+ G +M E + R+ + I + Q+ + L Q L R G+ Sbjct: 1069 VDEGEGAQHAWRMLLEEATPLAHLRQSQTSRVDIHIAADQVTPDQIEALEQILTASR-GS 1127 Query: 1113 IPVHLYYQRADARAR-LRFGATWRVSPSDRLLNDLRGLIGSEQVELE 1158 L+ A + W V+PS+ LL + L G+ L Sbjct: 1128 CQAVLHLSIPRRSATSVWLDPRWNVAPSEELLARIERLFGAPVATLH 1174 >UniRef50_Q1D042 DNA polymerase III, alpha subunit n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1D042_MYXXD Length = 1185 Score = 1322 bits (3421), Expect = 0.0, Method: Composition-based stats. Identities = 493/1198 (41%), Positives = 716/1198 (59%), Gaps = 62/1198 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F HL +H+ YS++DG + L+K GM ++A+TD N+ G + FY AGIKPI Sbjct: 3 FTHLHLHTLYSLLDGAIRMKDLIKTVKEKGMSSVAVTDHGNMFGAIDFYKKAKDAGIKPI 62 Query: 66 VGADFNVQCDLLGDEL-----THLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 +G + V ++ HL ++A N GY NL L S AY G+ P ID+ Sbjct: 63 LGMEAYVAGPKGREDRSEKVSHHLILVAKNEEGYANLRYLSSTAYMHGF-YYHPRIDKKV 121 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRTGRPDEE 179 L E ++GL L+ G+V + RG+ Y++ F P +FLE+ G P+++ Sbjct: 122 LAEHSKGLFALTACLGGEVTSACFRGDMDHARRAAQEYKDIFDPGHFFLEVQSNGMPEQD 181 Query: 180 SYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQY 239 +L+ +P+ AT D +I D AHE+ + I G TL D KR ++ + + Y Sbjct: 182 KANENLKQLSRDLDIPLCATADAHYIKREDARAHELLMCIASGKTLADGKRMKHSTDKLY 241 Query: 240 MRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTED-YLVKRAKE 298 + S EM E F DIPEA+ NT IA++CN+ ++LG+ LP F D T D Y+ + A E Sbjct: 242 VTSPTEMLEFFKDIPEAVHNTQRIAEQCNLELKLGKPMLPTFKVPDSHTPDSYMAELAYE 301 Query: 299 GLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPV 358 GL ER L + R +Y RL E+ VI +MGF GYFLIV +FI W+K +PV Sbjct: 302 GLRERFTELAATVTYPIDRE-QYQARLALEIGVIQKMGFCGYFLIVQDFINWAKKMNIPV 360 Query: 359 GPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHV 418 GPGRGSGAGSLVAYAL+ITD+DP+ ++LLFERFLNPERVSMPDFD+DFC ++RD+VI++V Sbjct: 361 GPGRGSGAGSLVAYALRITDVDPIPYNLLFERFLNPERVSMPDFDIDFCQDRRDEVIQYV 420 Query: 419 ADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAE 478 YG V QIITFG++ AK+V+RDV RV P+ DRI+KL+P +TL +A E E Sbjct: 421 GRKYGEMNVGQIITFGSLKAKSVLRDVCRVFALPFSEGDRIAKLVPEVLNITLREAIEME 480 Query: 479 PQLPEIYEADEEV----------KALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPL 528 P+L E+ E + + ++++A LEG+ R G HA GVVIA + +F P+ Sbjct: 481 PRLKEMMETPSNIGEVEGKPVTTRDVLEIALALEGLHRQPGMHAAGVVIADKPLWEFVPV 540 Query: 529 YCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAA 588 Y K +TQF K +VE AGLVKFDFLGL+TLT+I AL+++ + K+ Sbjct: 541 YQPPGEKTLITQFAKDEVEAAGLVKFDFLGLKTLTVIQHALDLVKRNHGKDIPR----HE 596 Query: 589 IPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMV 648 IPL+D+K+++++ + +T +FQ+ES G +++ +L+P+CFED+IA AL+RPGPL SGMV Sbjct: 597 IPLNDEKTWELMAKGDTAGIFQMESSGFTEMVVKLKPNCFEDVIAAGALYRPGPLDSGMV 656 Query: 649 DNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADML 708 D FI+RKHGRE++SYP H +L+PVL+ TYG+I+YQEQVMQI+QVL GYTLG AD+L Sbjct: 657 DVFINRKHGREKVSYP-----HPALEPVLKDTYGVIVYQEQVMQISQVLGGYTLGRADLL 711 Query: 709 RRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVS 768 RRAMGKKK E M +R+ F EG KN ++ ++A +IFDL+EKFA YGFNKSHSAAY LV+ Sbjct: 712 RRAMGKKKAEVMQAERAGFLEGCAKNNVDLKVAGEIFDLMEKFAEYGFNKSHSAAYGLVT 771 Query: 769 YQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDD 828 T WLKAHYP EFMAA+++++ DNT+KVV + E GL++LPPD+N F Sbjct: 772 IHTAWLKAHYPCEFMAALLSSEKDNTDKVVKHIGEARESGLEVLPPDVNQSDMEFGAVS- 830 Query: 829 GEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAF 888 G+I +G+GAIKGVGEG IE+I+EAR K G F+ LFD C R D++K+NR+V+E L+ +G+F Sbjct: 831 GKIRFGLGAIKGVGEGAIESILEAR-KDGSFKSLFDFCERVDSRKVNRKVMEALVKAGSF 889 Query: 889 DRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLA-----EEPEQIEQSYASCQP 943 D R + +++ A+ K +A GQ+ +FG+LA ++ Y + Sbjct: 890 DFEKRSRRQIFDTIEKAMNRGSASQKDKAAGQSSLFGMLAGPSSDGGGGGLKDDYVEVED 949 Query: 944 WPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAA 1003 W E+ L E+E +G Y++GHP++QY KE++RY + + + +T AG+V Sbjct: 950 WSEKERLSLEKEAIGFYVSGHPLHQYDKELKRYARPITA--VQRARKDDKLTVAGIVTVL 1007 Query: 1004 RVMVTKRGNRIGICTLDDRSGRLEVMLFTDA---------------------LDKYQQLL 1042 R TK G R+ T++D SG +E++ F + ++ LL Sbjct: 1008 RERPTKTGKRMAWVTIEDLSGSIELVCFPGKDGTRNVMGRDGKWAKQGPKPGFENWEHLL 1067 Query: 1043 EKDRILIVSGQV---SFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLN 1099 + D ++VSG V D+ + ++ ++ + REK + L + + + ++ + Sbjct: 1068 KSDDPILVSGTVQISQRDEDTPTPELIVDDIQSLKAVREKRTKRLELRVPADLLTEERVA 1127 Query: 1100 RLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSEQVEL 1157 +L + L +G PV + L + +V +D LL + L G VE Sbjct: 1128 KLHE-LAKKYAGATPVAVSVLFKGEGEALIGNTSIKVQVNDDLLLAVDRLFGMRVVEF 1184 >UniRef50_Q2Z0E7 DNA polymerase III, alpha subunit n=1 Tax=uncultured candidate division WS3 bacterium RepID=Q2Z0E7_9BACT Length = 1160 Score = 1317 bits (3408), Expect = 0.0, Method: Composition-based stats. Identities = 465/1170 (39%), Positives = 699/1170 (59%), Gaps = 37/1170 (3%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M FVHL HS YS++DG + +V++A MPALAITD ++ G ++FY Sbjct: 1 MMHSDFVHLHNHSQYSLLDGACRIDRMVQRALEFRMPALAITDHGSMFGAIEFYSEAREH 60 Query: 61 GIKPIVGADFNVQCDLLGDEL--------THLTVLAANNTGYQNLTLLISKAYQRGYGAA 112 GIKPI+G + V ++ +HL +L N GY+NL L S +Y G+ Sbjct: 61 GIKPIIGMEAYVTPGSHAEKPAGKGMESYSHLLLLIRNAEGYRNLMKLSSASYVDGF-YY 119 Query: 113 GPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPD-RYFLELI 171 P +D++ L + +GL+ + G+ + +L GN E + E F D +LE+ Sbjct: 120 KPRVDKELLRKYGDGLLACTACLKGEPAQHVLAGNEDAARESIIELVEIFGDGHVYLEVH 179 Query: 172 RTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRP 231 G P+E A V L G+P+VA ND ++ AH++ + I G +D+P R Sbjct: 180 NHGMPEEAVIRQAYVRLGRELGVPLVAANDCHYVRREQAAAHDVLLCIQTGREIDEPNRM 239 Query: 232 RNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTED- 290 R + + YM+S EEM ELF D P A NT+E+A++CN+ + +P+FP T+ Sbjct: 240 RMPNDEFYMKSPEEMRELFLDCPGAYENTIEVAEKCNLQLDFDHVHMPEFPIPQGYTDAA 299 Query: 291 -YLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQ 349 +L +EGLEER + P E + R EL +I QMGF GYFLIV +FI Sbjct: 300 AHLEALTREGLEERYETVTP----------EVEARAALELSMIGQMGFAGYFLIVHDFIH 349 Query: 350 WSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCME 409 ++ G+PVGPGRGS A S+V+YAL IT+LDPLEF L+FERFLNP R SMPDFD+DFC E Sbjct: 350 EARRRGIPVGPGRGSAAASIVSYALGITELDPLEFGLVFERFLNPARKSMPDFDIDFCYE 409 Query: 410 KRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGM 469 +R+++IE+V + YGR++V+QIITFGTM A+A IRDVGRVL PY VDR++K++P + + Sbjct: 410 RRNEIIEYVTEKYGRESVAQIITFGTMQARAAIRDVGRVLKFPYSEVDRVAKMVPRELNI 469 Query: 470 TLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLY 529 TL +A P+L + ++DE L+D A LEG+ R+A HA GV+IAP +I D+APLY Sbjct: 470 TLEEALAKTPELKALRDSDERYAKLLDYAGDLEGLARHASVHAAGVIIAPGRIDDWAPLY 529 Query: 530 CDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAI 589 +G+ TQ+ + + GL+KFDFLGLRTLT+I+ AL MI + R + P I Sbjct: 530 RSNKGE-ITTQYPMNSLARIGLLKFDFLGLRTLTVIHDALAMIRENRGIDLAP----DRI 584 Query: 590 PLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVD 649 PLDD +++++L T +FQ+ES GM+DL+++++P+ EDM A+ ALFRPGPL SGMVD Sbjct: 585 PLDDPETYELLGTGHTVGIFQVESSGMRDLLRKVRPERLEDMTAVNALFRPGPLGSGMVD 644 Query: 650 NFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLR 709 +++ RKHGR+++SY H L PVLE TYG++ YQEQVMQI+ L+G+++ AD+L Sbjct: 645 DYVKRKHGRQKVSY-----IHPKLAPVLEETYGVMAYQEQVMQISSALAGFSMSQADVLL 699 Query: 710 RAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSY 769 AM KK E+MA QR F G +NGI+ +A+K+FD +E F+GYGFNK HSA YA+++ Sbjct: 700 NAMRKKVVEQMATQREDFLAGCRENGISERIAVKVFDQMEFFSGYGFNKPHSACYAVLAV 759 Query: 770 QTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDG 829 +T +LK H+ EFMAA +T++MDN+++VV L EC R+G+++LPPD+N G F G Sbjct: 760 RTAYLKTHFAPEFMAATLTSEMDNSDRVVALTGECRRLGIRVLPPDVNEGHVEFRATSRG 819 Query: 830 EIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFD 889 +I +G+ A+K VG + +++ AR + G F ++FDL +R D + +NRRVLE L+ +GA D Sbjct: 820 DIQFGLSAVKNVGRAAVRSMVAARREHGSFEDVFDLTSRVDLRLVNRRVLESLVAAGALD 879 Query: 890 RLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEP--EQIEQSYASCQPWPEQ 947 L HRA ++G AL + + GQ + +L + E + PWP+ Sbjct: 880 GLHGHRAQQYEAIGAALDLGQRAQRDRDSGQTSLMDILDTDAGSELRPRRLPEATPWPDG 939 Query: 948 VVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMV 1007 V L E+E LG+Y++GHP+ +Y KE+ + + D+ + + G++ + Sbjct: 940 VALAKEKEVLGMYVSGHPLARYEKELSTFATATTM-DLAEMVDDEPVRLGGIITHVKTTA 998 Query: 1008 TKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTA 1067 ++G ++ TL+D +G +E+++F+ K +++ +D +IV G+VS + K+ Sbjct: 999 DRKGEQMAFVTLEDFTGSVELVVFSSTYAKKSEIIRRDAAVIVDGKVSTRE-EEEPKVIV 1057 Query: 1068 REVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARAR 1127 +V+ + A ++ + IS+T ++ +L LR L H GT PV + + A Sbjct: 1058 ADVVSLSHAHGRFVERMTISITSVGFEESMLEDLRDVLLSH-GGTCPVDIVVKAASGEDV 1116 Query: 1128 LRFGATWRVSPSDRLLNDLRGLIGSEQVEL 1157 + RV PS L+ L ++G V L Sbjct: 1117 MISTGGMRVEPSRELVARLEDIVGETGVAL 1146 >UniRef50_Q8K9S3 DNA polymerase III subunit alpha n=4 Tax=Enterobacteriaceae RepID=DPO3A_BUCAP Length = 1161 Score = 1314 bits (3402), Expect = 0.0, Method: Composition-based stats. Identities = 646/1162 (55%), Positives = 877/1162 (75%), Gaps = 5/1162 (0%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M+ FVHL VHSDYS++DGL+K L+KK+ LGM AL+ITDF NL G +KFY A H Sbjct: 1 MNLEEFVHLHVHSDYSIVDGLSKPEDLIKKSVNLGMKALSITDFNNLYGAIKFYNAAHKW 60 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPI-IDRD 119 G+KPI+G +L+ +ELT LT+LA N GY+NL LLIS+AY++GY + I++ Sbjct: 61 GLKPIIGVTVKFFSELIKNELTELTLLATNQDGYKNLILLISRAYKKGYFCEKYVTIEKK 120 Query: 120 WLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEE 179 WL ELN GLILLSGG G++G++LLRG ++L+ +C+ FYE++F Y+LELIRT R +EE Sbjct: 121 WLSELNNGLILLSGGCQGEIGKTLLRGQTSLISDCLHFYEKYFSGFYYLELIRTYRENEE 180 Query: 180 SYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQY 239 YL AV+L+ ++ +PVVATNDV F++ DF H+IR+AI++G L + K NYS Q+ Sbjct: 181 KYLSLAVDLSYSQNIPVVATNDVCFLNKEDFKIHKIRIAINEGVRLKESKIQNNYSKHQF 240 Query: 240 MRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKEG 299 +++E+EMC LF+DIPEA+ N+VEI+KRCNV ++ G+YFLPQF T +S E+YL++++ +G Sbjct: 241 LKTEKEMCFLFSDIPEAIINSVEISKRCNVFIKSGQYFLPQFNTRKISIENYLIQKSNKG 300 Query: 300 LEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVG 359 L++RL F ++ + + Y RL+TEL +IN+MGFP YFLIVMEFIQW+KDN +PVG Sbjct: 301 LKKRLESNFKKVDKEIFLK--YKNRLDTELGIINKMGFPSYFLIVMEFIQWAKDNNIPVG 358 Query: 360 PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVA 419 PGRGSGAGSLVAY L IT++DPL FDLLFERFLNPER+S+PDFD+DFCMEKRD+VIEHV Sbjct: 359 PGRGSGAGSLVAYVLNITEVDPLFFDLLFERFLNPERISLPDFDIDFCMEKRDRVIEHVV 418 Query: 420 DMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEP 479 YGR++V+QIITFGTM AKAVIRDVGRVLG+PYGF++ +SKL+P DPG+TL AF Sbjct: 419 HTYGRESVAQIITFGTMTAKAVIRDVGRVLGYPYGFINNLSKLVPLDPGITLKDAFSKNS 478 Query: 480 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 539 +L +Y++DE+++ LID+++KLEGV RN GKHAGGVVI+P+KITDF P+YCDE+G +PVT Sbjct: 479 ELYTLYKSDEDIQNLIDVSKKLEGVNRNVGKHAGGVVISPSKITDFCPVYCDEKGNNPVT 538 Query: 540 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 599 QFDK+D+EY GL+KFDFLGLRTLTIIN A+ MINK + + ++I +IPL++ K F + Sbjct: 539 QFDKNDIEYVGLLKFDFLGLRTLTIINCAVNMINKNLLLSNKKTININSIPLNESKCFLL 598 Query: 600 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 659 L++ ETT +FQLES GMKDL+KRLQPDCFED+IAL+ALFRPGPLQSGMVDNFI+RKHG E Sbjct: 599 LKKCETTGIFQLESYGMKDLVKRLQPDCFEDIIALIALFRPGPLQSGMVDNFINRKHGYE 658 Query: 660 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 719 EISYPD +WQH LKPVLE TYGIILYQEQVMQIAQ+L+GYTLG AD+LRRAM KK ++ Sbjct: 659 EISYPDHKWQHILLKPVLESTYGIILYQEQVMQIAQILAGYTLGKADILRRAMSKKNIKD 718 Query: 720 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 779 MA+QRS+F EGA+KNGIN +LA+KIFDL+EKFAGYGFNKSHS AYALVSYQTLWLKAHYP Sbjct: 719 MAEQRSIFIEGAQKNGINRKLAIKIFDLLEKFAGYGFNKSHSVAYALVSYQTLWLKAHYP 778 Query: 780 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 839 +EFMA+ MT+D+DNT+K+V LV+E +MG+KI+PP+IN Y F+V+ IVYG+GA+K Sbjct: 779 SEFMASAMTSDIDNTDKIVMLVNESIQMGIKIIPPNINLSKYEFYVDHTKNIVYGLGAVK 838 Query: 840 GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 899 G+G PI +++ R K G F +LFDLC RTD K+ R+VLEKLIMSG+ D +R L+ Sbjct: 839 GIGRNPILNLVQEREKNGLFSDLFDLCMRTDPNKITRKVLEKLIMSGSCDCFNKNRNYLL 898 Query: 900 NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQV-VLDGERETLG 958 + + DA+KA+ +H K + Q +FG EE ++++ + ++ L+ E + LG Sbjct: 899 SLIEDAIKASKEHFKIKKFQQESLFGSFKEELNILKKNNNLLNSFSDEEKKLENEHKVLG 958 Query: 959 LYLTGHPINQYLKEIERYVGGVRLKDMHPTER-GKVITAAGLVVAARVMVTKRGNRIGIC 1017 LYLTGHPI++Y +E++ Y+ + K I AG+VV+ + VTK NRI I Sbjct: 959 LYLTGHPIDRYAEELKYYLNNSTFSKLKLFNHTKKKIMVAGIVVSIKTKVTKNKNRIVIL 1018 Query: 1018 TLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077 LDD +G LEV++F L+ ++L++ ++ILIVSG ++ + S LKMTA ++M+++ AR Sbjct: 1019 ILDDSTGLLEVVIFKRLLNISEKLIQLNKILIVSGFLNTNFISKNLKMTAYDIMNLNLAR 1078 Query: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVS 1137 EKY L I LT++Q D L ++ Q + +G +PV+++ ++ D + + W ++ Sbjct: 1079 EKYLDKLTIVLTEKQRDKCFLKKIYQFFQNQTTGIVPVYIFCKKKDLDSEYKLIKKWLIT 1138 Query: 1138 PSDRLLNDLRGLIGSEQVELEF 1159 S++LL +L ++++++ Sbjct: 1139 ISNKLLVELDIFSKENKMQIKY 1160 >UniRef50_B5EQR5 DNA polymerase III, alpha subunit n=4 Tax=Bacteria RepID=B5EQR5_ACIF5 Length = 1167 Score = 1312 bits (3396), Expect = 0.0, Method: Composition-based stats. Identities = 589/1139 (51%), Positives = 773/1139 (67%), Gaps = 23/1139 (2%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M P+FVHL VHS+YS+ DG+ L ++ A GMPA+AITD NL LVKFY A G Sbjct: 2 MRTPQFVHLHVHSEYSLEDGIIPVKALARRCAERGMPAVAITDHGNLFALVKFYNAARGQ 61 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 G+KP++G++ V + L +L + TGY+NL+ L+S+AY G P ID W Sbjct: 62 GVKPLIGSEVWVHDVAEPERPVSLVLLCMDKTGYRNLSRLLSRAYLEGSRHGRPQIDVAW 121 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 180 L ++GLI LS G++GR+L R + + +Y FP+R++LE+ R G ++E+ Sbjct: 122 LEGSSDGLIALSAAGQGEIGRALQR-HPQQAESRARYYARLFPERFYLEVQRNGEAEQEA 180 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 + A V LAE LP+VATN+ F+D++DF A + R I GFTLDDP+RPR ++P+ + Sbjct: 181 LVQATVALAEKLDLPLVATNNAHFLDAADFAAFDARQCISAGFTLDDPRRPRRFTPEHRL 240 Query: 241 RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTG-DMSTEDYLVKRAKEG 299 EEM E FAD+PEA NTVEIA+RCN+ + LG Y LP +P + S ++YL A++G Sbjct: 241 PDPEEMRERFADLPEACDNTVEIARRCNMELVLGHYALPDYPIPANQSVDEYLHDAAQKG 300 Query: 300 LEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVG 359 L+ERL L + L Y ERL E+ VI QMGFPGYFLIV +FIQW+K+NGVPVG Sbjct: 301 LQERLQELRITGDATLP----YHERLLREVGVIQQMGFPGYFLIVADFIQWAKNNGVPVG 356 Query: 360 PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVA 419 PGRGSGAGSLVAYAL+ITDLDP+ LLFERFLNPERVSMPDFDVDFCM++RD+VI++VA Sbjct: 357 PGRGSGAGSLVAYALRITDLDPIGNGLLFERFLNPERVSMPDFDVDFCMDQRDRVIQYVA 416 Query: 420 DMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEP 479 D YGRD V QIITFGTM A+AV+RDVGRVLG PYGFVD+++KL+P D GMTLAKA E Sbjct: 417 DKYGRDRVGQIITFGTMKARAVVRDVGRVLGLPYGFVDQLAKLVPGDLGMTLAKALEESE 476 Query: 480 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCD-EEGKHPV 538 +L +++V+ L+D+A +LEG+ R+A HAGGVVI+P + D PL+ D EG V Sbjct: 477 ELRRRQAEEDDVRDLLDIALRLEGLPRHASTHAGGVVISPEPLADRLPLFNDGSEGGGNV 536 Query: 539 TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598 TQ DK DVE GLVKFDFLGLRTLTII+ A+++IN A G P+DI +PLDD +F Sbjct: 537 TQLDKDDVEKMGLVKFDFLGLRTLTIIDMAVKLINADAAAAGRAPVDIQQLPLDDAATFA 596 Query: 599 MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658 +L+ +ET AVFQLES GM+DL++RLQPD FED++ALVALFRPGPLQSGMVD+FI RKHG+ Sbjct: 597 LLKSTETAAVFQLESSGMRDLVRRLQPDTFEDIVALVALFRPGPLQSGMVDDFIARKHGK 656 Query: 659 EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718 +++Y H L P+L TYG+I+YQEQVMQ AQ L+GY+LGGAD+LRRAMGKKKPE Sbjct: 657 AQVTY-----LHPDLAPILRETYGVIVYQEQVMQSAQALAGYSLGGADLLRRAMGKKKPE 711 Query: 719 EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778 EMAKQRS+F EGA KNG+ A+ A IFDL+EKFA YGFNKSHSAAYALVSYQT +LKAHY Sbjct: 712 EMAKQRSIFLEGAHKNGLAADQAGAIFDLMEKFAEYGFNKSHSAAYALVSYQTAYLKAHY 771 Query: 779 PAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAI 838 P FM+AV+TADMD+T+KVV ++ EC RMGL+I PP + + F D I +G+GAI Sbjct: 772 PQFFMSAVLTADMDHTDKVVAMIAECARMGLRIAPPSVQHSVLEFRPEGDDHIRFGLGAI 831 Query: 839 KGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAAL 898 KG+G I+AI++AR +GG F LFDL R DT+K+NRR LE LI +GA D G RA+L Sbjct: 832 KGLGRAAIQAILDAR-RGGAFLNLFDLLCRVDTQKINRRALEALIRAGAMDDWGVSRASL 890 Query: 899 MNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLG 958 + S+ ++AA Q ++A Q +F +E ++ S + W L ERETLG Sbjct: 891 IASVDGCMEAAAQFQSSQASLQESLFS--GQEALRVAPPLVSAEAWSLTETLRQERETLG 948 Query: 959 LYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICT 1018 YL+GHP++ ++ +G + L D+ G + AGLVVA R TKRG+RI T Sbjct: 949 FYLSGHPMDSLRDDLTA-LGTIPLGDVA---VGSTVLVAGLVVARRSTRTKRGDRIYFLT 1004 Query: 1019 LDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEARE 1078 LDD GRLEV++F + + ++ E + ++V G+V D +SGGL+++A ++D +ARE Sbjct: 1005 LDDGQGRLEVVVFGEVWARAGKIREGEEPVLVLGEVGEDSYSGGLRLSALRLLDTAQARE 1064 Query: 1079 KYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRA-DARARLRFGATWRV 1136 + A L + L + D L L + G + L + A D A+LR Sbjct: 1065 ELAAQLTLDLGLAE--DMAPRDLLAVLRKY-PGQTALRLRLRVADDVVAQLRVTENLSF 1120 >UniRef50_C9KIR5 DNA polymerase III, alpha subunit n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KIR5_9FIRM Length = 1128 Score = 1311 bits (3394), Expect = 0.0, Method: Composition-based stats. Identities = 480/1162 (41%), Positives = 678/1162 (58%), Gaps = 47/1162 (4%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 F HL VH+++S++DG ++ L++ ALGM ++AITD + G++ FY G+KP Sbjct: 2 PFTHLHVHTEFSLLDGASRIKELIETTKALGMDSIAITDHGAMYGVIDFYKEAKKQGVKP 61 Query: 65 IVGADFNVQCDLLGD-------ELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIID 117 I+G + V + HL +LA N TGY+NL L+S A G P +D Sbjct: 62 IIGCEVYVAPGARQEHREVNGVRYYHLILLAENQTGYRNLVKLVSLANVEGM-YYKPRVD 120 Query: 118 RDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRTGRP 176 +D L + +EG+I LS G++ R++L+ N D V Y E F + +FLE+ G P Sbjct: 121 KDLLRQYHEGIICLSACIAGEIPRAILQDNMERADALVREYLEIFGRENFFLEIQNHGLP 180 Query: 177 DEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSP 236 +E VELA+ + +VATND+ ++ D + H+I + I T DDP R R S Sbjct: 181 EERKANAGLVELAKKYDVGLVATNDLHYVHREDSEFHDILLCIQMNKTFDDPDRMRFASD 240 Query: 237 QQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTED--YLVK 294 Y++S EEM LF D+PEA+ANT +IA RC V G LP +P +D YL Sbjct: 241 DYYLKSPEEMAALFPDLPEAIANTEKIAARCKVDFEFGHLQLPYYPIPAPYADDEAYLRH 300 Query: 295 RAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDN 354 +E L R A + + ERLE EL +I++MG+ YFLIV +FI +S+++ Sbjct: 301 LCEENLPRRYATV----------TEKIRERLEYELGIIHRMGYDSYFLIVWDFINYSREH 350 Query: 355 GVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQV 414 G+ VGPGRGS AGS+VAY L IT+LDPL++DLLFERFLNPERV+MPD DVDF +R +V Sbjct: 351 GIGVGPGRGSAAGSIVAYLLGITNLDPLKYDLLFERFLNPERVTMPDIDVDFDYIQRGKV 410 Query: 415 IEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKA 474 I++V + YG D V+QI+TFGTMAAK IRDVGRVL PY V I+KL+P + +TL KA Sbjct: 411 IDYVKERYGYDHVAQIVTFGTMAAKGAIRDVGRVLNLPYAEVAEIAKLVPNELKITLDKA 470 Query: 475 FEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEG 534 + + YE+ E+V LID+ARK+EG+ R++ HA GVVIA +TD+ P+ E Sbjct: 471 MQESADFRKAYESSEDVHRLIDLARKIEGLPRHSSTHAAGVVIARHPLTDYVPVSISE-- 528 Query: 535 KHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDK 594 VT++DK VE GL+K DFLGLRTLT+I+ + I K R + +DI IPL D Sbjct: 529 GTLVTEYDKDHVEELGLLKMDFLGLRTLTVISDTIANIEKSRHE----KVDIDKIPLTDG 584 Query: 595 KSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDR 654 + ML +T AVFQ+ES GM L++ L P+ F D+I LVAL+RPGPL SGMV++FI Sbjct: 585 LTSKMLCEGKTGAVFQMESAGMTQLVRDLAPENFADLIPLVALYRPGPLGSGMVEDFIKG 644 Query: 655 KHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK 714 +HG +E++Y H L+P+L+ T+G++LYQEQVMQI QVL+G+TLG AD+LRRAMGK Sbjct: 645 RHGEKEVTY-----MHPLLEPILKETFGVVLYQEQVMQIVQVLAGFTLGQADLLRRAMGK 699 Query: 715 KKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWL 774 KK E + Q+ F +G EKN I+A LA IFDL+ FA YGFNKSHSAAYALV++QT +L Sbjct: 700 KKHEILMAQKENFLDGCEKNHIDAGLANTIFDLLTHFADYGFNKSHSAAYALVAWQTAYL 759 Query: 775 KAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYG 834 KAHYPAEFMAA++T+ + +T KV ++ C RMG+KILPPDIN+ +F V+ D I +G Sbjct: 760 KAHYPAEFMAAMLTS-IMDTPKVSTYIELCRRMGIKILPPDINASSAYFSVDGD-AIRFG 817 Query: 835 IGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPH 894 + A++ VGE IE + R GG F L D C R D + +NRRV+E LI GAFD G Sbjct: 818 LAAVRNVGETAIENVARIRETGGPFSSLSDFCRRVDMRVVNRRVIESLIKCGAFDSFGAK 877 Query: 895 RAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGER 954 R+ L+ L + A Q K GQ +F E E P+ L E+ Sbjct: 878 RSQLLAVLPQTVMEAAQQQKDAVSGQMGLFSDETIE-ETGMLQLPDIDEVPKAERLRWEK 936 Query: 955 ETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRI 1014 E G Y+TGHP++QY ++E L+ +V+ G++ A+ + TK+G+ + Sbjct: 937 EATGFYITGHPLDQYAAKLENLPRIGSLQP-DTVRDKQVVRIGGMLTEAKRITTKKGDTM 995 Query: 1015 GICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDID 1074 T++D + +EV +F + LL D ++V G + D +K+ A V + Sbjct: 996 CFATVEDFTDSIEVTVFPRTFYQNMNLLVPDTPVVVQGHIDMTD--ETVKLIADSVWALK 1053 Query: 1075 EAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATW 1134 + R Y I L + + ++Q + H G + +AR + Sbjct: 1054 DYRFAY----YIELPAGGLPEAKRTEMKQLIAAHH-GDYATFFHSGGHWQKAR----ENF 1104 Query: 1135 RVSPSDRLLNDLRGLIGSEQVE 1156 + + L ++G+ +V Sbjct: 1105 WLDDAAETFEQLTAIVGAGKVR 1126 >UniRef50_C0Z7W1 DNA polymerase III alpha subunit n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z7W1_BREBN Length = 1142 Score = 1307 bits (3382), Expect = 0.0, Method: Composition-based stats. Identities = 462/1163 (39%), Positives = 692/1163 (59%), Gaps = 42/1163 (3%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL VH++YS++DG A+ LVK+A+ LGM ALA+TD NL G + FY A AGI+PI Sbjct: 4 FVHLHVHTEYSLLDGAARIDTLVKRASELGMHALAMTDHANLYGAIPFYKACLEAGIRPI 63 Query: 66 VGADFNVQCDLLGDE------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRD 119 +G + V L D +HL VLA N TGY+NL L + A G P ++++ Sbjct: 64 IGMELYVIEGNLQDRVRNAPPPSHLIVLAENETGYRNLLRLATIANTDG-NYILPRLNKE 122 Query: 120 WLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPD-RYFLELIRTGRPDE 178 L + +GLI LSG + G+V + LL G + E Y+ F + ++LEL G E Sbjct: 123 VLAKHTDGLIALSGCQQGEVAKLLLAGEADTAKEAALRYQRMFGEQHFYLELADHGLEVE 182 Query: 179 ESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQ 238 V+L++ G+P++ATN+V +I D H+I +AI +G T+ + R R + Q Sbjct: 183 RRLNTRLVKLSQETGIPLIATNNVHYIHREDHQQHDILLAIKEGKTIGEENRFRYETDQY 242 Query: 239 YMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKRAK 297 Y++S EEM LFA P+ALANTV +A RC + + G + LP+FP + + YL + + Sbjct: 243 YLKSAEEMAALFAFAPQALANTVAVADRCKLDLTFGAHILPEFPLAEGQDSTQYLRELCE 302 Query: 298 EGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVP 357 +G ER + P E RL+ EL +I GF YFLIV +F++++ +NG+P Sbjct: 303 KGCLERYGEITP----------EAQARLDHELAIITGTGFTDYFLIVWDFMRYAHENGIP 352 Query: 358 VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEH 417 GPGRGS AGSLVAY LKIT++DPL F LLFERFLNPERV+MPD D+DF +E+RD+VI + Sbjct: 353 TGPGRGSAAGSLVAYVLKITNVDPLRFQLLFERFLNPERVTMPDIDIDFSVERRDEVIHY 412 Query: 418 VADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEA 477 VA YG D V+QIITFGTMAA+A +RDVGR LG G VDR++K+IP PGMT+ +A + Sbjct: 413 VASKYGHDRVAQIITFGTMAARAAVRDVGRALGLSLGIVDRVAKMIPQSPGMTIERAMQI 472 Query: 478 EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHP 537 P + ++ +++ LI+ AR +EG+ R+A HA GVVI+ +T++ PL EG Sbjct: 473 NPDIGKLCAENKQAAQLIETARGVEGLPRHASTHAAGVVISREPLTNYVPLQTGNEG-LA 531 Query: 538 VTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSF 597 +TQ+ +E GL+K DFLGLR LTII L + ++ LD+ +P DD+K+F Sbjct: 532 LTQYPMEILEEVGLLKMDFLGLRNLTIIQETLRHLQEQG-----ISLDLDKLPTDDEKTF 586 Query: 598 DMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHG 657 ML R ETT +FQLES GM+++++ L+P +D+IA++AL+RPGP++ ++ +I KHG Sbjct: 587 RMLSRGETTGIFQLESSGMRNVLRDLKPSSLDDIIAVLALYRPGPME--IIPQYIAAKHG 644 Query: 658 REEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKP 717 ++ Y H L+P+L T+G ++YQEQ+MQI+ L+G++LG AD+LRRA+GKKK Sbjct: 645 TSKVQYA-----HPVLEPILRETHGFMIYQEQIMQISSTLAGFSLGEADILRRAVGKKKR 699 Query: 718 EEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAH 777 E +A+QR F G + G EL +++DL+ +FA YGFNK+HS AYA+++YQ +LKA Sbjct: 700 ELLAEQREKFVAGCVRQGYGDELGNQVYDLIVRFADYGFNKAHSVAYAIIAYQMAYLKAT 759 Query: 778 YPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGA 837 YP FMAA+++ + + ++ +E R+ L +L PD+N L F V D I +G+ A Sbjct: 760 YPLAFMAALLSLSIGSQTRIAEYTEEARRLQLTVLGPDVNKSLAFFTVEQD-AIRFGLAA 818 Query: 838 IKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAA 897 +K VG G IE+I++ R KG +R++FD CAR D + +NRRV+E L + GA D L HR Sbjct: 819 VKNVGYGAIESIVKER-KGRPYRDVFDFCARVDARLVNRRVVESLTLCGALDSLPGHRNQ 877 Query: 898 LMNSLGDALKAADQHAKAEAIGQADMF-GVLAEEPEQIEQSYASCQPWPEQVVLDGERET 956 L+ L +A+ A+ Q ++F G P + Y P L ER+ Sbjct: 878 LLLLLDEAVGKANNKRIERDANQLNLFAGEEDAAPLREPAEYPEVPPLSHTQQLKEERDL 937 Query: 957 LGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGI 1016 +G+Y++GHP++Q+ R V + + R K + G++ AR + TK+G+ + Sbjct: 938 IGVYISGHPLDQFAHVASRPEVTV-ISSLGDVPRDKTVKVFGMITEARRIQTKKGDPMAF 996 Query: 1017 CTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEA 1076 TL+D++ +E+++F KY QLLE+++I++ +V D +K+ A V D Sbjct: 997 ITLEDKTAPVELVVFPQVYAKYAQLLEREQIIVAEARV--DHQEDMVKLLASRVWDAQTL 1054 Query: 1077 RE-KYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWR 1135 + K L + ++ Q D L +L + + GTIPV L+Y+ R +R Sbjct: 1055 PQPKSETVLFVKISAEQEHDSTLQKLSRLFVE-KKGTIPVILFYE--GKRQTIRLPEANW 1111 Query: 1136 VSPSDRLLNDLRGLIGSEQVELE 1158 V + L R ++G + V + Sbjct: 1112 VVVDESFLEQAREIVGPDSVIRK 1134 >UniRef50_Q67RP9 DNA polymerase III alpha subunit n=4 Tax=Clostridia RepID=Q67RP9_SYMTH Length = 1252 Score = 1304 bits (3376), Expect = 0.0, Method: Composition-based stats. Identities = 445/1108 (40%), Positives = 654/1108 (59%), Gaps = 49/1108 (4%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M P FVHL +H++YS++DG + PL ++AA LGM A+A+TD L G++ FY A Sbjct: 26 MGRPEFVHLHLHTEYSLLDGANRIEPLARRAAELGMRAMAMTDHGVLFGVLPFYKAMRNH 85 Query: 61 GIKPIVGADFNVQCDLL-----GDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPI 115 G+KPI+G + V G++ HLTVLA N TGY+NL L+S Y G+ P Sbjct: 86 GVKPIIGCELYVAPGSRHVKSGGEKPYHLTVLAENYTGYKNLVKLVSAGYTEGF-YYKPR 144 Query: 116 IDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRTG 174 +D + L EGLI+LSG G+V + L G + Y E F PD YFLEL G Sbjct: 145 VDLELLNTYREGLIVLSGCLAGEVAQKFLAGQPEEARRAIGRYREIFGPDHYFLELQDLG 204 Query: 175 RPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNY 234 P+++ +E +GLPVVATND ++ D ++ + I T+DDP R R Sbjct: 205 LPEQQGLNRFLLE----QGLPVVATNDAHYLRPQDARTQDVLICIGTNKTIDDPNRMRMG 260 Query: 235 SPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLV 293 + + Y++S EEM F +P AL N++ IA+RCNV + LG+ LP + YL Sbjct: 261 TSELYVKSAEEMYWRFGHVPGALENSLAIAERCNVELPLGQIHLPHYALPPGYDAPGYLR 320 Query: 294 KRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKD 353 K E + R P+ ERLE EL VI MGF GYFLIV +F+++++ Sbjct: 321 KLCYERIGPRYGGRPPEGA---------MERLEHELNVIISMGFAGYFLIVWDFVEFARS 371 Query: 354 NGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQ 413 G+PVGPGRGSGA SLVAY L ITD+DPL + LLFERFLNPERV MPDFD+DFC E+R + Sbjct: 372 RGIPVGPGRGSGASSLVAYVLGITDVDPLRYGLLFERFLNPERVDMPDFDIDFCYERRGE 431 Query: 414 VIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAK 473 VIE+V + YG + V+Q+ITF TMAA+A +RDVGR LG YG VDR++KL+P G +L Sbjct: 432 VIEYVHNKYGAECVAQVITFNTMAARAAVRDVGRALGMSYGEVDRVAKLLPW--GQSLDA 489 Query: 474 AFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEE 533 A E +L +YE EE++ LID AR +EG+ RN HA GVVI + + PLY Sbjct: 490 ALEKTEELRTLYEEREEIRTLIDTARAVEGMPRNPSVHAAGVVITADPLVEHVPLYK-MG 548 Query: 534 GKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDD 593 VTQFD ++ GL+K DFLGLRTLT+I+ A++ + + +P DI IP+DD Sbjct: 549 DDSIVTQFDMDQLKEIGLLKMDFLGLRTLTVIDHAVKFVRQ-----YQPDFDIERIPMDD 603 Query: 594 KKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFID 653 +++ M+ R ET +FQ+E+ + D++++++P FED+IA ++L RPGP++ + ++I Sbjct: 604 PETYAMIARGETLGLFQIEAGWVADVLRQMKPTRFEDIIATISLCRPGPMEH--IPDYIA 661 Query: 654 RKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMG 713 K + Y H L+P+L TYG+++YQEQ++QIA +L+G +LG AD+LRRA+ Sbjct: 662 GKQNPAGVKY-----LHPDLEPILSETYGVMVYQEQIIQIAHLLAGLSLGQADLLRRAIA 716 Query: 714 KKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLW 773 KKK E+M K +F E E+ G + E+A ++D + +FA YGFNK H+ YA V+YQT + Sbjct: 717 KKKREDMEKYGRLFMEALEQRGYSHEVATALYDQMIRFANYGFNKCHATPYAKVAYQTAY 776 Query: 774 LKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVY 833 LK H+P FMAA+M + M K+ ++EC R+G+++LPPD+N+ F V D I + Sbjct: 777 LKRHHPVAFMAALMNSVMGQEAKLALYIEECRRLGIQVLPPDVNTSFARF-VPDGRTIRF 835 Query: 834 GIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGP 893 G+GA+K +G ++AI+ AR +GG F L DLC R D + LNRR LE LIM+GAFDR+ P Sbjct: 836 GLGAVKNIGWNAVDAIVAAREEGGPFTSLRDLCERVDLRPLNRRALESLIMAGAFDRVAP 895 Query: 894 ------HRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQI-EQSYASCQPWPE 946 R+ ++ +L L A + + GQ +F + P E+ +P Sbjct: 896 PGGRPARRSQMLEALDKILDDAQKLQRHRQAGQISLFDLGVAGPGTAGEEPLPDIPEFPP 955 Query: 947 QVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVM 1006 Q +L E+E LG Y++GHP+ QY + + G + + + G + G+V + + Sbjct: 956 QRLLAMEKEVLGFYVSGHPLRQYQAALAAH-GCLPVAALPEQRDGARVAVGGMVAGLKQV 1014 Query: 1007 VTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMT 1066 T+ G + TL+D++G++EV++F L ++L +++ L+V G++ + +K+ Sbjct: 1015 TTRSGANMAFLTLEDQTGQVEVVVFPRVLQACARVLREEQPLLVRGRLQVQE--DEVKLL 1072 Query: 1067 AREVMDI--DEAREKYARGLAISLTDRQ 1092 A EV + DE + I + Q Sbjct: 1073 ADEVSLLRDDEKPRRPEPPERIEVGAAQ 1100 Score = 46.5 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 32/78 (41%), Gaps = 3/78 (3%) Query: 1081 ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSD 1140 + + + + R + ++ R+ Q L H G V + + + RV+ + Sbjct: 1178 PQFVYLRVPARDENSPMMRRVEQVLRAH-PGPTRVRIKMEPEGK--WIEVHEHLRVTVTP 1234 Query: 1141 RLLNDLRGLIGSEQVELE 1158 L+N L ++G + V + Sbjct: 1235 SLVNALARIVGEQSVVVR 1252 >UniRef50_C6BS12 DNA polymerase III, alpha subunit n=4 Tax=Desulfovibrio RepID=C6BS12_DESAD Length = 1175 Score = 1303 bits (3373), Expect = 0.0, Method: Composition-based stats. Identities = 476/1196 (39%), Positives = 714/1196 (59%), Gaps = 59/1196 (4%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MSE FVHL VH++YS++DG + L ++A GMPA+AITD ++ G V FY Sbjct: 1 MSE--FVHLHVHTEYSLLDGAIRIKDLCQQAKDFGMPAVAITDHGSMFGAVTFYMTAMDM 58 Query: 61 GIKPIVGADFNVQCDLLGDEL----------THLTVLAANNTGYQNLTLLISKAYQRGYG 110 GIKPI+G + V + DEL HL +LA N GY+N+ L S + G+ Sbjct: 59 GIKPIIGCEVYVAPGDIDDELAHTRKDKKGRYHLVLLAKNQQGYKNIIKLCSLGFLEGFH 118 Query: 111 AAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170 P + + L + +EG+I LS G+V R+L+ E YE FP ++LE+ Sbjct: 119 Y-KPRVSKYLLNKYSEGVIALSACLAGEVPRALMNEGLDAGIEMAKTYESIFPGNFYLEV 177 Query: 171 IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230 G ++E + AE GLP+VATND ++ D++AH++ + I T+D KR Sbjct: 178 QANGLKEQEDLNELIYKCAEQTGLPLVATNDCHYLTKEDYEAHDLLLCIQTQTTVDAEKR 237 Query: 231 PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGD-MSTE 289 R + Q Y + +EE E FA +PEA+ANT +IA+ CN+ + LG Y+ P++ + M+ E Sbjct: 238 FRMGTDQLYFKPQEEFEEYFAHVPEAIANTQKIAEMCNLEIELGNYYFPEYELPEGMTIE 297 Query: 290 DYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQ 349 VK KEGL++R+ + +Y ERL+ EL VIN+MGFP YFLIV +FI Sbjct: 298 TEFVKLCKEGLQKRI-----ENAPYEIDEAKYWERLDYELGVINEMGFPAYFLIVQDFIN 352 Query: 350 WSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCME 409 W+KDN +PVGPGRGS AGS+VA+AL+IT+LDP+ +DLLFERFLN ERVSMPD DVDFC Sbjct: 353 WAKDNRIPVGPGRGSAAGSIVAWALRITNLDPIPYDLLFERFLNVERVSMPDIDVDFCER 412 Query: 410 KRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP-- 467 +R +V+++ ++ YG D V+QI T+GTM KAVI+DVGR +G + D I+KL+P DP Sbjct: 413 RRLEVVKYCSEKYGWDHVAQITTYGTMKTKAVIKDVGRAMGMHFSETDPIAKLVPDDPAV 472 Query: 468 ----------GMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVI 517 +T+ A EA P+L + D ++ L+D+A +LEG++R+A HA GVVI Sbjct: 473 IAQGLGVKKAKITVPNAVEAIPELSNMVATDPKIAKLMDIATRLEGMSRHASTHAAGVVI 532 Query: 518 APTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRA 577 + +TD+ PLY ++G+ VTQ+D VE GL+KFDFLGLRT+T+I L++I Sbjct: 533 SDKPMTDYLPLYKGKKGE-IVTQYDMKKVEKVGLIKFDFLGLRTMTVIEDCLDIIR---- 587 Query: 578 KNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVAL 637 G+ D+ + LDD+ +FD+ + +T VFQ+ES GM+ ++ L+P CFED+IA++AL Sbjct: 588 LQGKEAPDLDTLTLDDQDTFDIFCKGDTDGVFQVESSGMRKYLRMLRPSCFEDIIAMLAL 647 Query: 638 FRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVL 697 +RPGPL SGMVD FI RKHG E++Y +L+P L+PTYG+I+YQEQVM A + Sbjct: 648 YRPGPLGSGMVDEFIKRKHGEIEVTY-----LWPTLEPSLKPTYGVIVYQEQVMGAAMTI 702 Query: 698 SGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFN 757 + Y+LG D+LRRAMGKK PEEMAK R F +GA++N I + A IFDL+E+FA YGFN Sbjct: 703 ANYSLGEGDLLRRAMGKKIPEEMAKHRVRFVDGAKENNIPEQTANDIFDLMEQFAAYGFN 762 Query: 758 KSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDIN 817 KSHSAAYAL+SY T +LKAH+P EFMAA+M+ +M+NTEK++ ++ C M + + PDIN Sbjct: 763 KSHSAAYALISYYTAYLKAHFPVEFMAALMSTEMNNTEKIIMYINACRDMDVTVRQPDIN 822 Query: 818 SGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRR 877 G+ F V + G+I+YG+ IK VGE I+ I+E R K G F++ D R + +++ +R Sbjct: 823 LGVARFSVYE-GDIIYGMAGIKNVGEEAIDEIVEERQKNGPFKDFIDFITRVNLRRVTKR 881 Query: 878 VLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVL-----AEEPE 932 V+E LI +GAFD +G R+ L+ SL A+ + K + G +M +L AEEP Sbjct: 882 VIEYLIRAGAFDSMGLTRSGLIASLDKAVSYGQKKNKEKESGMINMLDMLGGGGEAEEPA 941 Query: 933 QIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGK 992 + + ++ + E+E LG YLT HP+ Y E+ R +G +++ Sbjct: 942 VVSFEEFNMPEMDDKEMQRLEKEALGFYLTCHPLLSYRNEMSR-LGLQTIENCPNLAHEA 1000 Query: 993 VITAAGLVVAARVMVTKR-GNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVS 1051 I ++ + ++TK+ G ++ T++D +G E+++F ++ Q L +D L++ Sbjct: 1001 TIKLGAIITGYKEIITKKSGKKMAFATIEDMTGSGELIIFPKTYEEVHQYLGQDIPLLIK 1060 Query: 1052 GQVS-------FDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQS 1104 G+V ++ K+ E+ ++ A+ + +S+ ++ + L+ Sbjct: 1061 GKVDNPPPEEGQEEAMPESKVMCDEISPLENAQAGCQEAVPLSVHHSLCSEEGIAELKAI 1120 Query: 1105 LEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLND--LRGLIGSEQVELE 1158 L + G+ P+ L D+ LR G T+ + P+ + L G+ + +L+ Sbjct: 1121 LAGY-PGSAPITLQMFLPDSICTLRLGHTYNIKPNGDFWKEFNLWRKNGNGKAKLQ 1175 >UniRef50_B6FXS8 Putative uncharacterized protein (Fragment) n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6FXS8_9CLOT Length = 1192 Score = 1301 bits (3367), Expect = 0.0, Method: Composition-based stats. Identities = 464/1210 (38%), Positives = 700/1210 (57%), Gaps = 78/1210 (6%) Query: 3 EPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGI 62 E F HL VH++YS++DG ++ LVK+A GM A+AITD + G + FY A GI Sbjct: 5 EKNFTHLHVHTEYSLLDGFSRVKTLVKRAKEKGMTAVAITDHGCMFGAIDFYKAAKAEGI 64 Query: 63 KPIVGADFNVQCDLLGDELT-------HLTVLAANNTGYQNLTLLISKAYQRGYGAAGPI 115 KPI+G + L D+ HL +LA + GY+NL ++SK+Y G+ P Sbjct: 65 KPIIGCEVYTAPRKLTDKDPNYDKHQGHLVLLAKDMVGYKNLIKIVSKSYVDGF-YYKPR 123 Query: 116 IDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPD-RYFLELIRTG 174 D D L + ++GLI LS GDV R+++ GN + Y + F + Y+LE+ G Sbjct: 124 TDMDELKKHSQGLIALSACLAGDVPRAIMNGNYDKARKLAMEYRDIFGNGNYYLEIQDHG 183 Query: 175 RPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNY 234 P+++ V L+ +P+VATNDV ++D D +I + + T+DD R + Sbjct: 184 LPEQKQVNTEVVRLSRELNIPLVATNDVHYVDKDDAKIQDILMCLQMQKTIDDENRMKFP 243 Query: 235 SPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLV 293 S + Y++S EEM +LF ++ EAL NT EIA+RCNV +Y LP++ + +T Y Sbjct: 244 SDEFYLKSREEMEQLFPELEEALDNTNEIAERCNVEFEFHKYHLPRYDVPEGYTTNGYFR 303 Query: 294 KRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKD 353 + ++GL ER P+ EY ERLE EL I MG+ YFLIV +FI ++K Sbjct: 304 ELCQKGLVERYGEDCPE---------EYKERLEYELNTIENMGYVEYFLIVWDFINFAKQ 354 Query: 354 NGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQ 413 N + VGPGRGS AGS+VAY LKITD+DP+++ LLFERFLNPERVSMPD D+DFC E+R++ Sbjct: 355 NNIMVGPGRGSAAGSIVAYTLKITDIDPMKYSLLFERFLNPERVSMPDIDIDFCYERREE 414 Query: 414 VIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAK 473 VI++V YG D V+QIITFGTM AK IRDV RVL Y D+I+K IP + GMT+ K Sbjct: 415 VIDYVKRKYGEDHVAQIITFGTMGAKIAIRDVARVLNVSYNKADQIAKEIPFELGMTIDK 474 Query: 474 AFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEE 533 A ++ P L E+YE+D E + +ID++++LEG R+A HA GVVIA + ++ PLY ++ Sbjct: 475 AMDSNPTLVELYESDAEAREVIDISKRLEGTLRHASTHAAGVVIARNPVDEYVPLYKHQD 534 Query: 534 GKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNG-EPPLDIAAIPLD 592 TQF + +E GL+K DFLGLRTLT+I AL++I R G +D + + D Sbjct: 535 S--ITTQFTMTTLEELGLLKMDFLGLRTLTVIRDALDLIELNRDIKGYTEHIDFSKMEYD 592 Query: 593 DKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFI 652 D + F+ L + T VFQLES GM++ +K+L+P+ FED++A ++LFRPGP+ S + +I Sbjct: 593 DDEVFETLSQGNTLGVFQLESSGMRNFMKQLKPNSFEDIVAGISLFRPGPMDS--IPTYI 650 Query: 653 DRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAM 712 + K+ E+++Y ++ L+P+LE TYG ++YQEQVMQ+ + L+GY+ G +D++RRAM Sbjct: 651 ENKNNPEKVTY-----INDKLRPILEVTYGCLVYQEQVMQVVRDLAGYSYGRSDLVRRAM 705 Query: 713 GKKKPEEMAKQRSVFAE------------GAEKNGINAELAMKIFDLVEKFAGYGFNKSH 760 KKK + M ++R F G +NGI+ E A KIFD + FA Y FNKSH Sbjct: 706 SKKKMDVMEEERQYFIHGKFDDEGNIEIPGCIRNGISEEDANKIFDDMIDFARYAFNKSH 765 Query: 761 SAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGL 820 +AAY +++Y+T +LK HYP EFMAA+MT+ M N++KVV + EC +G+ + PPDIN Sbjct: 766 AAAYGVLAYETAYLKVHYPVEFMAALMTSIMGNSDKVVEYIRECNAIGIPVNPPDINKSF 825 Query: 821 YHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLE 880 F V D I +G+ A+K VG IE I++ R + G F++ D R DTK N+RV+E Sbjct: 826 SKFSVEGD-SIRFGLAAVKNVGVNIIENIVKEREENGEFKDFVDFAKRLDTKDTNKRVVE 884 Query: 881 KLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQ---- 936 LI GAFD++ +RA LM L++ K GQ +F + + E+ + Sbjct: 885 SLIKCGAFDQISENRATLMAGYESVLESISMDRKKNVQGQISLFDAFSTQVEEAPEMQLS 944 Query: 937 -SYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERY--VGGVRLKDMHPTE---- 989 + + + E+ L+ E+E LG+YL+GHP+++Y E++R + ++ ++ E Sbjct: 945 TNLPVVREFSEKERLNMEKEVLGMYLSGHPLSEYKSELDRKTSINMKKINELKEDEKTYM 1004 Query: 990 --RGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRI 1047 + + G+V+A R+M TKR + TL+D G +EV++F L K+ LL D I Sbjct: 1005 KLHDREVIMGGMVIAKRIMTTKRNEIMAFITLEDLYGTIEVVVFPQTLKKFNILLNDDSI 1064 Query: 1048 LIVSGQVSFDDFSGGLKMTAREVMDIDE--------------AREKYARGLAISLTDRQI 1093 +++ G +S DD K+ AR++ DI+E + + +++ + Sbjct: 1065 ILIKGAISIDD--DEAKLIARDIKDINEEYRFNSEKISFDTRSNSNKPKNKQMNVRIDTV 1122 Query: 1094 DDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRV-----SPSDRLLNDLRG 1148 D+ L ++ G + L D + T++V + + L +L Sbjct: 1123 GDEELLMKVFTITRKYPGRDRLVLL--PKDQNIDMSKPITYKVPGMYINADEELKKELGS 1180 Query: 1149 LIGSEQVELE 1158 L+G +E+E Sbjct: 1181 LVGKLNIEIE 1190 >UniRef50_B0TI36 DNA polymerase iii alpha subunit, putative n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TI36_HELMI Length = 1208 Score = 1300 bits (3364), Expect = 0.0, Method: Composition-based stats. Identities = 474/1229 (38%), Positives = 699/1229 (56%), Gaps = 101/1229 (8%) Query: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61 + RFVHL VHS+YS++DG A+ LV +AA L MPALAITD + G+++FY G Sbjct: 11 ANRRFVHLHVHSEYSLLDGAARIDKLVDRAAELDMPALAITDHGVMYGVIEFYKKAKARG 70 Query: 62 IKPIVGADFNVQCDLLGD-------ELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGP 114 +KPI+G + V + D + HL +LA + GY+NLT L+S+A+ G+ P Sbjct: 71 VKPIIGCEVYVASRTMLDRDPQKDSDQHHLVLLAKDIEGYRNLTALVSQAHTEGF-YYKP 129 Query: 115 IIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRT 173 +D D L ++GLI LS G++ R LL E AFY + F D Y++EL Sbjct: 130 RVDHDRLARHSKGLIALSACLAGEIPRLLLNSQERQARERAAFYRDIFGCDNYYIELQDH 189 Query: 174 GRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRN 233 P ++ + + LA GL +VATNDV +++ D ++ + I G TL D +R + Sbjct: 190 DIPAQKQVNRSLIRLAGELGLGLVATNDVHYVERKDAYIQDVLLCIQMGKTLQDTERMKF 249 Query: 234 YSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGD-------- 285 + Y++S EM LF ++PEAL N++ IA+ C++ + LP +P D Sbjct: 250 DGAEFYLKSAREMAMLFGEVPEALFNSLAIAEACDLQFDFSKQHLPAYPIPDEPAFIQWR 309 Query: 286 -------------MSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVI 332 E YL +G+ R +R +Y RL ELQ I Sbjct: 310 REHERAPWPGLPWGDAEQYLTYLCSQGMTWR----------GCAKRDDYRRRLAFELQTI 359 Query: 333 NQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFL 392 +MGF GYFLIV +F +++ G+ VGPGRGS AGSLVAY L ITD+DP+E++LLFERFL Sbjct: 360 CRMGFAGYFLIVQDFCAFARREGILVGPGRGSAAGSLVAYVLGITDIDPIEYNLLFERFL 419 Query: 393 NPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHP 452 NPER+SMPD D+DF +R +VI++V YG D V+QIITFGTMAA+A +RDVGRVL P Sbjct: 420 NPERISMPDIDIDFDFVRRSEVIDYVVHKYGSDRVAQIITFGTMAARAAVRDVGRVLNLP 479 Query: 453 YGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHA 512 VD+++K IP + GMT+ KA E P+L + + D+ + L++ AR +EG+ R+A HA Sbjct: 480 LADVDKVAKAIPAELGMTIEKAIEISPELRALCQ-DQRISHLVETARAIEGMPRHASTHA 538 Query: 513 GGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMI 572 GVVIAP+ + D+ P+ +G TQF K VE GL+K D LGL+TLT+I ++ I Sbjct: 539 AGVVIAPSPLIDYLPVQRGADGG-VTTQFPKDTVEEIGLLKMDLLGLKTLTLIGDVIDKI 597 Query: 573 NKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMI 632 + R L + +PLDD K+F +L R+++ VFQLES G++ +++ L+P+ F+D+I Sbjct: 598 RRSRGLQ----LKLKDLPLDDPKTFQLLSRADSLGVFQLESSGLRAILRELKPNSFDDII 653 Query: 633 ALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQ 692 ALVAL+RPGPLQSGMVD+FI RKHG+ + Y H +L+P+L+ TYG+ILYQEQVM+ Sbjct: 654 ALVALYRPGPLQSGMVDDFIRRKHGQTTVQY-----LHPALEPILKDTYGVILYQEQVMR 708 Query: 693 IAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFA 752 IA L+G+TLG ADMLRRAMGKKKP+ +A R F EG + I+ + A IFDL+E FA Sbjct: 709 IASELAGFTLGEADMLRRAMGKKKPDVIAGLRQQFVEGCAAHHISEKTAGDIFDLMEFFA 768 Query: 753 GYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKIL 812 GYGFNKSHSAAYAL++YQT +LKA+YP EFMA ++T+ D++EKV VDEC R+G+++L Sbjct: 769 GYGFNKSHSAAYALIAYQTAYLKANYPVEFMAGLLTSVADSSEKVAQYVDECQRLGIRVL 828 Query: 813 PPDINSGLYHFHVNDDG-----EIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCA 867 PPD+N+ F V D +I +G+ A+K VG G I+AI+ AR GG F L D C Sbjct: 829 PPDVNASEIDFSVVADPLTGGLQIRFGLAAVKNVGRGAIDAILLARETGGPFTSLDDFCT 888 Query: 868 RTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF--- 924 R D ++ NRRVLE LI +GA LG R L+ L ++ A + + A GQ ++F Sbjct: 889 RIDNRQANRRVLESLIKAGALSSLGKRRP-LLQILDKCMEVAARRQRDLATGQMNLFDFG 947 Query: 925 ---------------------GVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTG 963 G + + +P + +L E+E LG+Y +G Sbjct: 948 GFGGEGGRGEPFEAGALSDFSGFSSGLSAETAVPLPEIADFPHREILAMEKELLGIYFSG 1007 Query: 964 HPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRS 1023 HP+ + +E+ + + + + P + + G++ A R TK+G + TL+D S Sbjct: 1008 HPLEELRPWLEQQIS-MTIARIQPDNDQQKVKLGGVIHALRRTTTKKGQLMAYFTLEDWS 1066 Query: 1024 GRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR------ 1077 G ++V++F +K + ++ D +IV G++ +++ ++ + ID A Sbjct: 1067 GGVDVLVFPRTFEKCAEKIQDDAAVIVEGKIHYEE--ENKRIFCENLWAIDPALREKKVV 1124 Query: 1078 ------EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG 1131 E L + + + D +L H +G+ PV L + G Sbjct: 1125 EGKPNGETRQPVLHLWIPEASTDMAAREKLDAICRAH-AGSTPVQLNFLVDRKVVPKAVG 1183 Query: 1132 ATWRVSPSDRLLNDLRGLIGSEQVELEFD 1160 V+ S L + L+ ++++ ++ Sbjct: 1184 ----VTLSPALRSALKAHFREIRMKIVWE 1208 >UniRef50_A3EVF9 DNA polymerase III, alpha subunit n=3 Tax=Leptospirillum RepID=A3EVF9_9BACT Length = 1201 Score = 1297 bits (3356), Expect = 0.0, Method: Composition-based stats. Identities = 482/1183 (40%), Positives = 689/1183 (58%), Gaps = 47/1183 (3%) Query: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61 S +FVHL VH+ YS++DG K PL++KA A MPA+A+TD NL G ++F+ G Sbjct: 3 STDQFVHLHVHTQYSLLDGANKIDPLIRKARAENMPAIAMTDHGNLFGAIEFFQTAKKHG 62 Query: 62 IKPIVGADFNVQCDLLGDE-------------------LTHLTVLAANNTGYQNLTLLIS 102 +KPI+G + + D HL +LA N+TGY+NL ++S Sbjct: 63 VKPIIGCEVYITPRSRFDRQDLYFGGDGPHQAKKINNASFHLILLAENDTGYRNLLKIVS 122 Query: 103 KAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF 162 ++ G+ P ID + L +EGLI LSG G + L RG++ + E F Sbjct: 123 LSHLEGF-YYRPRIDLELLSRHHEGLIALSGCLKGQISYMLTRGDTDRAYATAGLFREIF 181 Query: 163 -PDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHD 221 P+ YF E+ G D+ + L++ +P+VATND +++ D H+I + + Sbjct: 182 GPENYFFEVQANGLEDQRIANREIIGLSKKLSIPLVATNDCHYLEREDSVPHDILLCLQT 241 Query: 222 GFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF 281 G TL+DP R R S + Y+++ EM F ++PEA+ NT+ IA R +V++ L +P + Sbjct: 242 GKTLEDPARLRFGSDEFYLKTPREMVRSFEELPEAIENTLRIADRIDVSIDLQTTHMPSY 301 Query: 282 PTGD-----MSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMG 336 + + + V+ ++EGL+ R + E+ Y ERLE E+QVI +MG Sbjct: 302 RLDENQGQTTTVPELFVRTSREGLDARFQENTFSDTEK----ALYLERLEREIQVIQKMG 357 Query: 337 FPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPER 396 + GYFLIV +FI+ +++ G+PVGPGRGS AGS+VA++L+IT++DP+ F LLFERFLNPER Sbjct: 358 YEGYFLIVWDFIRKAREMGIPVGPGRGSAAGSVVAWSLRITNIDPIRFGLLFERFLNPER 417 Query: 397 VSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFV 456 VS+PD DVDFCM +R +VI++V D YG D V+ I TFGTM AK IRDVGRVLG Y V Sbjct: 418 VSLPDIDVDFCMNRRGEVIQYVVDRYGMDRVAMIATFGTMGAKGSIRDVGRVLGMTYAEV 477 Query: 457 DRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVV 516 DR++K+IP MTL KA E P L + E D ++ L ++RKLEG+TR++ HA GVV Sbjct: 478 DRVAKMIPNSLDMTLEKALEENPDLRALLEKDPRMEELFSLSRKLEGITRHSSIHAAGVV 537 Query: 517 IAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRR 576 I+ + + PL G+ VTQF K DVE GLVKFDFLGL TLT+I A I Sbjct: 538 ISREPLLEHVPLMRGANGE-IVTQFTKDDVEKVGLVKFDFLGLTTLTLIQGAENRIQAHT 596 Query: 577 AKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVA 636 P IPLDD +++ +L +T +FQLESRGM DLI ++QP+ FED+IAL+A Sbjct: 597 -----PDFSADRIPLDDARTYRLLSEGKTLGIFQLESRGMTDLIMKMQPETFEDLIALLA 651 Query: 637 LFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQV 696 L+RPGP+ SGMVD+FI RK EI Y + L+PVL TYG+I+YQEQVMQIA V Sbjct: 652 LYRPGPINSGMVDDFIKRKKNPREIRY-----ELPELEPVLRETYGVIVYQEQVMQIANV 706 Query: 697 LSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGF 756 L+G++LG AD+LRRAMGKKKPEEMAK + F +GA + G E A +F+L+ FAGYGF Sbjct: 707 LAGFSLGEADLLRRAMGKKKPEEMAKMQDKFVDGAIRKGFPKEKATHVFELMAYFAGYGF 766 Query: 757 NKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDI 816 NKSHSAAYAL+SYQT +LKAHYP E AA++T +D+TEK+ + MG+++L PDI Sbjct: 767 NKSHSAAYALISYQTAYLKAHYPLELWAALLTNALDDTEKIGVFLAGAKDMGIEVLAPDI 826 Query: 817 NSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNR 876 N + F + I++G+GA+K VG+ ++ I+EAR G F + D R KK+NR Sbjct: 827 NQSEFDFAILPGSRILFGLGAVKNVGKQAVDCILEARANDGPFVDFPDFLKRIVGKKVNR 886 Query: 877 RVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQ 936 RV+E LI +GAF LG R+ M SL D L A++ + Q +F Sbjct: 887 RVIEALIRAGAFRSLGIRRSVAMESLDDLLAWAEKQKSGKGSLQKSLFSEDQGGRSSGPP 946 Query: 937 SYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITA 996 W E+++L E+ LG YLT HP+ +Y + + + + + G+ + Sbjct: 947 -LREVPEWDERMLLREEKNALGFYLTSHPMARYADLLLK-LDTRSTRSLESVSEGETVRV 1004 Query: 997 AGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSF 1056 +V A R + TK+G+++ TL D G +E +LF D + Q+ L+ D ++V+G + Sbjct: 1005 FAVVSALREVKTKKGDKMAQLTLLDMEGTIEAVLFPDVYAQVQEKLQTDLPILVTGPLER 1064 Query: 1057 DDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVH 1116 +DF G K+ V I +A E + + + L + + L L+Q L + G +P Sbjct: 1065 NDF--GSKIRVTRVETIGQALETLYQTVVVRLQTDGLSVKDLEDLKQILLGY-PGPVPAV 1121 Query: 1117 LYYQRADARARLR-FGATWRVSPSDRLLNDLRGLIGSEQVELE 1158 L + + G VSPSD L++ L G G + V + Sbjct: 1122 LELKVMTRPYPVAVIGLHLNVSPSDELVHALSGRFGEQAVVRK 1164 >UniRef50_Q2LTT3 DNA polymerase III alpha subunit n=3 Tax=Deltaproteobacteria RepID=Q2LTT3_SYNAS Length = 1155 Score = 1296 bits (3353), Expect = 0.0, Method: Composition-based stats. Identities = 466/1169 (39%), Positives = 681/1169 (58%), Gaps = 37/1169 (3%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M FVHL VH+ YS++DG + L+ KA GM A+A+TD N+ G + FY A Sbjct: 1 MKIETFVHLHVHTQYSLLDGTIRIKDLISKAKEFGMQAVAMTDHGNMFGTIDFYQAACKE 60 Query: 61 GIKPIVGADFNVQCDL--------LGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAA 112 GIKPI+G + V +GD HL VLA + GYQNL L S Y G+ Sbjct: 61 GIKPIIGCELYVAPKTRFEKTGGSIGDTARHLLVLAKDYQGYQNLMKLSSLGYLDGF-YY 119 Query: 113 GPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPD-RYFLELI 171 P +D++ L + ++GLI LS G++ +L+ Y + F + ++LE++ Sbjct: 120 RPRVDKELLKKYHKGLIALSACLNGEIANYILKDKFKDALLAAENYRQIFGEHNFYLEIM 179 Query: 172 RTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRP 231 G P++++ +E++ +PV ATND +++ D ++HE+ + I G TLDD R Sbjct: 180 ENGLPEQKTANEGLLEISRQLSIPVAATNDCHYLNREDAESHEVLLCIQTGKTLDDSDRM 239 Query: 232 RNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTG-DMSTED 290 R + Y RS ++M +LF PEA+ NT EIA RCN++ G+++LP+F D + ED Sbjct: 240 RFSTDAFYFRSPDDMKQLFNYCPEAVENTKEIADRCNLSFEFGKFYLPKFEVSSDETLED 299 Query: 291 YLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQW 350 L K A +GL ER+ + + E + R Y++RL EL++I MGF GYFLIV +F+ + Sbjct: 300 RLEKVAIQGLAERMPPIVDERGEEV--RGIYEKRLADELKIIKSMGFAGYFLIVSDFVSY 357 Query: 351 SKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEK 410 +K +PVGPGRGS AGSLVAYAL ITD+DP+ +DL FERFLNP+R+SMPD D+DFC E Sbjct: 358 AKRMNIPVGPGRGSAAGSLVAYALTITDIDPIRYDLFFERFLNPDRISMPDIDIDFCPEG 417 Query: 411 RDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMT 470 R +I +V + YG D VSQIITFG M A+AVIRDVGR L PYG VD I+KL+P ++ Sbjct: 418 RGDIIRYVTEKYGEDKVSQIITFGKMQARAVIRDVGRALNIPYGEVDSIAKLVPNILNIS 477 Query: 471 LAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYC 530 L A E EP+L E + DE+++ L+ +++ LEG+ R+A HA GVVI+ + + PLY Sbjct: 478 LDDAMEMEPRLQEAAKRDEKIRKLLKLSKSLEGLNRHASVHAAGVVISDVPLVERVPLYK 537 Query: 531 DEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIP 590 + TQF +D+ GL KFDFLGL+TLT+I AL I + + LD+ +P Sbjct: 538 SPKDD-VTTQFSMNDLSTVGLTKFDFLGLKTLTVIKNALSFIKEGLGTD----LDLKNLP 592 Query: 591 LDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDN 650 L+D +F +L + ET VFQLES GMK+++ R++PDC ED+IAL+AL+RPGP+ M+ Sbjct: 593 LNDADTFKLLSKGETDGVFQLESDGMKEILVRMKPDCIEDLIALIALYRPGPM--NMIPE 650 Query: 651 FIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRR 710 FI RK G+ I Y + + L+ +L+ TYG+ILYQEQVMQIA V++ Y++ AD LR+ Sbjct: 651 FIARKQGKTPIIY-----EIDQLEGILKETYGVILYQEQVMQIASVIAQYSMSEADTLRK 705 Query: 711 AMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQ 770 MGKK +M +R F EGA+ NGI + KI++ +E FA YGFNKSHS AYA+V+YQ Sbjct: 706 VMGKKDTAKMETERPKFMEGAKANGIPEQKTRKIWEQMETFASYGFNKSHSTAYAMVTYQ 765 Query: 771 TLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGE 830 T +LKAHYP EFMAA++T++ DN +K++ + C MG+ ILPPDIN F V + Sbjct: 766 TAYLKAHYPVEFMAALLTSEKDNRDKIIKYIHVCKEMGIAILPPDINESQRDFSVAGN-R 824 Query: 831 IVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDR 890 I +G+ AIK VG G I+A+I +R KGG F D C RTD KK+N+RVLE LI GAFD Sbjct: 825 IRFGLAAIKNVGLGAIDAMISSRQKGGEFLSFEDFCNRTDLKKVNKRVLESLIKCGAFDS 884 Query: 891 LGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYAS-----CQPWP 945 G R LM+ + ++ + + K +A QA F + + + ++SYA+ Q W Sbjct: 885 TGQRRRQLMSEYENIIEISQKRQKDKASKQASFFDDMEDLGVEEKRSYANSSAAEIQEWD 944 Query: 946 EQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARV 1005 + +L E+E LG Y+TGHP+ Y +I + + ++ AG+V R Sbjct: 945 PKELLAHEKEFLGFYVTGHPLEGYASKISMVANTDSAGIL-EKGDKEPVSLAGIVSGIRE 1003 Query: 1006 MVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKM 1065 + T++ + +L+D G +V+ F + K +L D + V G + + +K+ Sbjct: 1004 VFTRKKEIMAYVSLEDLKGATDVIFFPEIYKKVTDILHGDAPIFVKGILDVAE--ENVKV 1061 Query: 1066 TAREVMDIDEAREKYARGLAISLTDRQ--IDDQLLNRLRQSLEPHRSGTIPVHLYYQRAD 1123 A E + E + + D L++RL Q L + G +L+ Sbjct: 1062 IAEEASLLSETEYNPFSSVHFMVDIENNGTSDHLVDRLHQ-LTKNYKGKYDAYLHLINGS 1120 Query: 1124 ARARLRFGATWRVSPSDRLLNDLRGLIGS 1152 ++ G ++S S L + ++G Sbjct: 1121 CETKIYLGDKAKLSISPELKREANIILGE 1149 >UniRef50_B5YEZ7 DNA polymerase III alpha subunit n=2 Tax=Dictyoglomus RepID=B5YEZ7_DICT6 Length = 1127 Score = 1292 bits (3343), Expect = 0.0, Method: Composition-based stats. Identities = 446/1152 (38%), Positives = 700/1152 (60%), Gaps = 51/1152 (4%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL VH++YS++DG + L+ +A MPA+AITD + G++ FY GIKPI Sbjct: 3 FVHLHVHTEYSLLDGACRIDELIDQALEFNMPAVAITDHGVMYGVIDFYKNAKEKGIKPI 62 Query: 66 VGADFNVQCDLLGD-----ELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 +G + V D +L HL +LA + GY+NL ++S ++ G+ P +D++ Sbjct: 63 IGCEVYVAPGSRFDKKQRTDLYHLILLAKDFEGYKNLIKIVSLSFLEGF-YYKPRVDKEL 121 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 180 L E ++G+I LS G++ +L+ N + Y + F + ++LEL G ++E Sbjct: 122 LREYSKGIIALSSCLAGEIPSYILQNNLEKAKNAIKEYLDIFGEDFYLELQNNGMEEQEY 181 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 ++L+ +P+VATNDV ++ D + H+I + I G L+D R R + + Y Sbjct: 182 VNSYLIKLSRELNVPLVATNDVHYLRKEDAEIHDILLCIQTGSKLNDKDRLRFKTNEFYF 241 Query: 241 RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMST-EDYLVKRAKEG 299 +S EEM LF D+P+A+ NT++IA++CNV + L LP F + T + Y + EG Sbjct: 242 KSPEEMKALFKDVPDAIENTLKIAEKCNVEIPLNNVILPVFEVPEGETLDSYFERLCWEG 301 Query: 300 LEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVG 359 ++R P+ ERL E+ VI QMGF GYFLIV +F+ ++K G+PVG Sbjct: 302 AKKRFGEDIPEN---------IRERLSYEISVIKQMGFSGYFLIVQDFVNYAKSRGIPVG 352 Query: 360 PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVA 419 PGRGS AGSLV+Y L IT+++P + L+FERFLNPERV+MPD D+DFC E+R++VIE+V Sbjct: 353 PGRGSAAGSLVSYVLGITNIEPTRWGLIFERFLNPERVTMPDIDIDFCFERREEVIEYVR 412 Query: 420 DMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEP 479 + YG++ V+QIITFGTMAA+A +RDVGRVL PY VDRI+KLIP P ++ +A Sbjct: 413 NKYGKEHVAQIITFGTMAARASVRDVGRVLDVPYNEVDRIAKLIP--PNTSIEEALNTSE 470 Query: 480 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 539 +L + E + + K +I++A+++EG R+A HA G+VI+ + ++ PL G VT Sbjct: 471 ELRNLVENNPQAKRIIEIAKRIEGNARHASIHAAGIVISKDPLMEYVPLQV-MNGTDVVT 529 Query: 540 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 599 Q +++E GL+K DFLGLRTLT+I ++ I + +DI I L D+K +++ Sbjct: 530 QLPMTNLEELGLLKMDFLGLRTLTVIYDTIKKIKENYGIE----IDINNISLSDEKVYEL 585 Query: 600 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 659 LQ+ ET VFQLESRGM++L++ ++P+ FED+IA++AL+RPGPL G ++++I RK G E Sbjct: 586 LQKGETIGVFQLESRGMRNLLRDIKPEKFEDLIAVLALYRPGPL--GRLESYIKRKRGEE 643 Query: 660 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 719 ++ Y H +L+P+L TYG+I+YQEQVM+IA L+G+TLG AD+LRRAMGKKKPE Sbjct: 644 KVEY-----MHPALEPILAETYGVIIYQEQVMEIAHRLAGFTLGQADVLRRAMGKKKPEV 698 Query: 720 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 779 M +QR +F +GA + GI +A++IF+ + KFA YGFNKSHSAAYA VS+QT +LKA+YP Sbjct: 699 MEEQRGIFVKGAVERGIPENVAIEIFEDMAKFAEYGFNKSHSAAYAFVSFQTAYLKAYYP 758 Query: 780 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 839 E+MA+++T+ ++T K+ + E R+G+KILPPD+N + F V G I +G+ AIK Sbjct: 759 KEYMASLLTSVKNSTTKLSKYIAEAKRIGIKILPPDVNESVVDFTVTPQG-IRFGLSAIK 817 Query: 840 GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 899 VGE EAI+E R++ G F+ +FD R +K +N+R LE LI SGAFD G R AL+ Sbjct: 818 NVGESVAEAIVEERSR-GRFKSIFDFIKRLSSKVINKRALESLIKSGAFDSFGYSRRALL 876 Query: 900 NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 959 ++ L++A +A IGQ + + + E+I + + +L+ E+E LG Sbjct: 877 ENIDKILESAQVMKRAH-IGQVSLIDLESLPQEEI---INNMPEFSIDEILEMEKEMLGF 932 Query: 960 YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTL 1019 Y++ P + L++I + + D+ E G + G++ R ++ ++ ++ TL Sbjct: 933 YVSYDPQEE-LRKISEKLFDYTIDDLVEVESGSQVIVPGILKNVREVIDRKNQKMLFATL 991 Query: 1020 DDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQ--VSFDDFSGGLKMTAREVMDIDEAR 1077 +D +G E+ +F+ Y+ +L++ + +I+SG+ + D+ +K+ +V D++ Sbjct: 992 EDFTGEAEITVFSSVYGNYKDILKEGKKVIISGKLEIDRDESEERIKIIVDQVGDLE--- 1048 Query: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVS 1137 + L I L D +I ++L ++R+ L ++ G +PV + + + + V Sbjct: 1049 ---SNILVIQL-DNKIGYEVLFKVREIL-KNKKGLVPVIIRFD----EHAILTAPDFWVF 1099 Query: 1138 PSDRLLNDLRGL 1149 + L +L L Sbjct: 1100 YDEELRKNLESL 1111 >UniRef50_B3DUG0 DNA polymerase III, alpha subunit n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DUG0_METI4 Length = 1159 Score = 1292 bits (3343), Expect = 0.0, Method: Composition-based stats. Identities = 466/1166 (39%), Positives = 679/1166 (58%), Gaps = 40/1166 (3%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 FVHL +HS+YS++D A+ +V KA LGMPA+A+TD NL G + FY A IKP Sbjct: 4 NFVHLHLHSEYSLLDASARIKDVVSKAKQLGMPAVALTDHGNLYGTIDFYKACVSQNIKP 63 Query: 65 IVGADFNVQCDLLGDEL------THLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDR 118 I+G + + D H+T+LA NN GY+NL LISKA+ G+ P ID Sbjct: 64 IIGCEAYITSGSRFDRKGSRSHIYHMTLLAKNNQGYKNLLKLISKAHLEGF-YYKPRIDL 122 Query: 119 DWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRTGRPD 177 + L E GLI SG G++ + +L G+ + F P+ ++LE+ G + Sbjct: 123 ELLKEHKAGLIGTSGCMNGEIPQKILEGDLKGAKKLAEELSRLFDPNCFYLEIQNHGLKE 182 Query: 178 EESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQ 237 E+ + A++ GLP+VATNDV +++ D H++ + I + DPKR + P+ Sbjct: 183 EKEIREVLADFAQSLGLPLVATNDVHYVEQEDAQFHDVLLCIGTASQIHDPKRKKYPCPE 242 Query: 238 QYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF--PTGDMSTEDYLVKR 295 Y ++ ++M ELF + P+A+ NT IA+ C+VT+ LG+ P + P+ + +YL Sbjct: 243 FYFKTPQQMAELFNEFPQAVENTANIARLCDVTIELGKNHFPSYTLPSPYKTHGEYLRTL 302 Query: 296 AKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNG 355 EGL++R + + ERLE EL VI Q GF YFLIV +FI ++K G Sbjct: 303 CYEGLQKRYDNI----------SEQIKERLEYELSVIEQTGFSSYFLIVWDFIHYAKKEG 352 Query: 356 VPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVI 415 +PVGPGRGS AGSL AY L ITD+DP+++ L+FERFLNP+RVS PD D+DFC +R QVI Sbjct: 353 IPVGPGRGSAAGSLTAYVLGITDIDPIKYGLVFERFLNPQRVSPPDIDIDFCYNRRSQVI 412 Query: 416 EHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAF 475 ++V YG +V+QIITFGT+ AK +RDV RVLG Y DRI+K+IPPDP +TL +A Sbjct: 413 DYVRKKYGERSVAQIITFGTLGAKMAVRDVARVLGMSYQEADRIAKMIPPDPQLTLERAR 472 Query: 476 EAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGK 535 E PQL +++E D + + ++ +A KLEG+TR AG HA GVVI+ + DF PL E + Sbjct: 473 ELNPQLDQLWENDPQSREVLTIATKLEGLTRQAGVHAAGVVISEGDLLDFIPLSRGEHNE 532 Query: 536 HPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKK 595 VTQ+ + GL+K DFLGL+TLT+I+ L +I ++ LD PLDDK Sbjct: 533 -IVTQWSMEPIAEIGLLKMDFLGLKTLTVISECLALIKEKE----NILLDPKQFPLDDKN 587 Query: 596 SFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRK 655 ++++L R +T VFQLES GM +L+K+L+P ED+IALVAL+RPGP+++ + + DRK Sbjct: 588 TYELLGRGQTIGVFQLESSGMVELVKKLKPGNIEDIIALVALYRPGPMEN--IPAYADRK 645 Query: 656 HGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKK 715 G+ I+Y H L+P+L+ TYG+++YQEQVMQ A VL+GY+LG +D+LRRAMGKK Sbjct: 646 LGKVPITY-----DHPLLEPILKDTYGVMIYQEQVMQAANVLAGYSLGESDLLRRAMGKK 700 Query: 716 KPEEMAKQRSVFAEGA-EKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWL 774 KPEEM KQR F +G EKN I E A++IF+ +EKFAGYGFNK+HSA Y ++Y T +L Sbjct: 701 KPEEMRKQRDQFIKGCKEKNNIPEEKAIQIFETLEKFAGYGFNKAHSACYGYLAYVTAYL 760 Query: 775 KAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYG 834 KA+YP ++ +++ + +TEK+ LV EC RMG+ +LPPDI+ F V G I +G Sbjct: 761 KANYPVFYLCTLLSYESGDTEKIELLVSECRRMGIGVLPPDISKSEVRFSVEG-GSIRWG 819 Query: 835 IGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPH 894 + AIK VGE EAI+E+R K G + LFDLC R + LN+++LE LI SGA D LG Sbjct: 820 LSAIKNVGEAAAEAIVESRKKRGSYHSLFDLCLRISGRTLNKKILESLIKSGACDSLGRS 879 Query: 895 RAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGER 954 R L+ SL AL A +K GQ ++F QS A + +P + L E+ Sbjct: 880 RKELLESLPAALSAGSITSKERLSGQQNLFEEHNFIDPTDRQSSAKGEDYPLNIRLHWEK 939 Query: 955 ETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRI 1014 E LG YL+ HP+++++ I + + + + G++ +++ + Sbjct: 940 ELLGTYLSSHPLDEWMSWIRLFQNE-PISSLKELADNSRLYVPGMITHIEKKTSQKSKKP 998 Query: 1015 GI-CTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDI 1073 L+D++G +EV+LF D L +V GQ+S + + + + + I Sbjct: 999 YFKLILEDQTGHIEVILFKDNLSSSLIDHWTTTAFVVDGQLSCRE--NAVSIRSEHLYTI 1056 Query: 1074 DEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADA-RARLRFGA 1132 +EA + L I++ + Q +L + +R G IPV Y + + + G Sbjct: 1057 EEALQSLPTSLVITVKEGQGGADPWKKLYELFLENR-GDIPVVFRYVKNEGIICNIEVGR 1115 Query: 1133 TWRVSPSDRLLNDLRGLIGSEQVELE 1158 + V S + L L + LE Sbjct: 1116 EFFVKLSIPFMEKLFSLFTPGSINLE 1141 >UniRef50_C0QG07 DnaE n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QG07_DESAH Length = 1184 Score = 1291 bits (3340), Expect = 0.0, Method: Composition-based stats. Identities = 468/1178 (39%), Positives = 691/1178 (58%), Gaps = 41/1178 (3%) Query: 1 MSEP-RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59 M P F HL VH+++S++DG + L+K+ M +AITD + G F Sbjct: 2 MDTPSPFCHLHVHTEFSLLDGAIRLDALLKRCKEFNMDTVAITDHGTMFGTAPFNEKARK 61 Query: 60 AGIKPIVGADFNVQCDLLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAA 112 GI+PI+G + V + ++ L HL +LA + GY NL L+S A G+ Sbjct: 62 VGIQPILGCEVYVAPRSIRNKTAEDNKGLNHLVLLAKDREGYGNLCKLVSIAQFEGF-YY 120 Query: 113 GPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELI 171 P IDR+ L + ++GLI LS GD+ + ++ L + +Y + F D +FLE+ Sbjct: 121 KPRIDRELLTKYSKGLIALSACLKGDIPQKIIHNQMDLAFDSARYYLDTFGEDNFFLEIQ 180 Query: 172 RTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRP 231 + G +E E+++ +P+VATND ++ AHE + I G TL+D R Sbjct: 181 KNGMEIQEKVNQGLWEVSKKLSIPMVATNDCHYLSRDHVRAHEALLCIQTGNTLNDANRF 240 Query: 232 RNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM----- 286 + S + Y +S +EM F P A+ NT+ IAKRCNV Y P++ + Sbjct: 241 KFDSDELYFKSADEMIADFKTYPGAIENTLLIAKRCNVEFGEKVYHFPRYTSAQGEKSGE 300 Query: 287 ----STEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFL 342 + + ++A+EG E RL L + Y ERL E+ VI MGFPGYFL Sbjct: 301 DCVQTAGEIFKRQAQEGFERRLKML--KRKNPNLDEALYRERLAYEIGVILDMGFPGYFL 358 Query: 343 IVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDF 402 IV +FI++S+++ +PVGPGRGS AGS+VAYA++IT LDP+ L+FERFLNP R+SMPD Sbjct: 359 IVADFIRYSREHNIPVGPGRGSAAGSMVAYAMEITALDPIAHGLIFERFLNPSRISMPDI 418 Query: 403 DVDFCMEKRDQVIEHVADMYG-RDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISK 461 DVDFC+E RD+V ++V D YG D VSQIITFG + AKAV+RDVGR L P VD ++K Sbjct: 419 DVDFCIEGRDEVYKYVIDRYGGADYVSQIITFGKLKAKAVVRDVGRALSVPLPEVDVLAK 478 Query: 462 LIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTK 521 LIP D L +A + P++ E+ D K LID+A LEG+ R A HA GVVI+ Sbjct: 479 LIP-DNAKNLGQALKDVPRIMELVNQDPVKKELIDIALLLEGLPRQASTHACGVVISDKP 537 Query: 522 ITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGE 581 + ++ P Y +EG+ VTQFD + VE GLVKFDFLGLR LT+I L+++ K+ + Sbjct: 538 LVEYLPTYKGKEGE-VVTQFDMNFVEKLGLVKFDFLGLRNLTVIKNTLDLLKKQSKE--- 593 Query: 582 PPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPG 641 D+ I +DD ++++L R++TT VFQLES GMK+LI RLQP CF D++ALVAL+RPG Sbjct: 594 -VPDLLEIDMDDPPTYELLARADTTGVFQLESSGMKELITRLQPACFSDIVALVALYRPG 652 Query: 642 PLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYT 701 PL SGM D++++RKHGRE++ Y L+P+L+ TYG+ILYQEQVM+IA VL+ Y+ Sbjct: 653 PLDSGMADSYVERKHGREDVVY-----LFPQLEPILKETYGVILYQEQVMKIAGVLANYS 707 Query: 702 LGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHS 761 + AD LR+AMGKK P M + R +F +GA++N ++ A ++FDL+EKF GYGFNKSHS Sbjct: 708 MADADGLRKAMGKKIPAMMEEHRGLFLKGAKENNLDGAKAAELFDLMEKFGGYGFNKSHS 767 Query: 762 AAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLY 821 AAYAL+ +QT +LKAHYP E+MAA+MT+DM N + VV +DEC + +LPPD+N Sbjct: 768 AAYALICFQTAYLKAHYPLEYMAALMTSDMSNIDSVVKFIDECRNHEINVLPPDVNESES 827 Query: 822 HFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEK 881 F V I +G+ A+KG+G I++I+E R++ G F ++D C R + K+N+RVLE Sbjct: 828 VFTVAP-AAIRFGLAAVKGIGSAAIDSIVEIRSQEGPFTSIYDFCERVNLTKVNKRVLEA 886 Query: 882 LIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLA--EEPEQIEQSYA 939 LI GAFD G R+ +M L DAL ++ + +A Q D+F E S Sbjct: 887 LIKCGAFDSTGSKRSQMMAVLEDALDHGNRIQREKADAQMDLFADTEGGEALPLSVPSMP 946 Query: 940 SCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGL 999 + +L E+ETLG Y+TGHP+++Y + I+++ V + + T G+ + G Sbjct: 947 DIPELDDNDLLAMEKETLGFYITGHPLDRYEEMIKKFAN-VNSETLVETPEGQSVRMGGA 1005 Query: 1000 VVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDF 1059 + +++ TK+G+ + L+D+ G +EV++F + + LL D +I+ +V Sbjct: 1006 LRPLKILKTKKGDMMAFAALEDKKGSVEVVIFPELYQEVHYLLNDDTPVILQAEVQ--KR 1063 Query: 1060 SGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYY 1119 +K+ A +++ ID+A ++ + I++ + D +L RL+ L +GT V L Sbjct: 1064 ESNVKLLAEQIVPIDKAEAEWTASIVITMAAKGADISVLERLKGLLHRF-AGTCSVFLEI 1122 Query: 1120 QRADA-RARLRFGATWRVSPSDRLLNDLRGLIGSEQVE 1156 D ++ VSP L ++ L+G +E Sbjct: 1123 TVEDGSSVVIQLSQDELVSPDPLLFQEVEALLGKNTIE 1160 >UniRef50_Q2S3X0 DNA polymerase III, alpha subunit n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S3X0_SALRD Length = 1166 Score = 1291 bits (3340), Expect = 0.0, Method: Composition-based stats. Identities = 436/1187 (36%), Positives = 666/1187 (56%), Gaps = 56/1187 (4%) Query: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 P F HL H+ YS++DG A L++ A +PA+AITD NL G+ +FY + ++ Sbjct: 2 PNFSHLHCHTQYSLLDGAAGIDHLIESAERRDIPAVAITDHGNLYGVPEFYTTAQKSDVQ 61 Query: 64 PIVGADFNVQCDLLGDEL----THLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRD 119 PI+G +F + + D+ H +LA N TGY+NL L S ++ G+ P ID D Sbjct: 62 PIIGCEFYLTPSGIQDQSDPTRYHQVLLAKNQTGYENLMQLSSTSFLEGF-YYKPRIDLD 120 Query: 120 WLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEE 179 L + +EGL+ + G V + +L E Y + F D Y++E+ D+ Sbjct: 121 LLRKHHEGLVATTCCLQGQVPQMILNQGEEAAQEKFEEYLDIFGDDYYIEIQDHDIDDQH 180 Query: 180 SYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQY 239 + ++ A A + V+ATNDV ++D D +A +I + + G +DP R R + Q Y Sbjct: 181 TVNEVLLQWARAYDVEVLATNDVHYVDQQDHEAQDILLCLQTGDDYNDPDRMRFSNDQFY 240 Query: 240 MRSEEEMCELFADIPE-----ALANTVEIAKRCNVTVRLGEYFLPQFPTGDM--STEDYL 292 ++ M E IPE AL NT ++A +C+ + +G+ +P +P + + YL Sbjct: 241 LKDSAGMMEALTGIPEEFQREALVNTNKVADKCSFDLPMGDLLMPHYPIPEGFEDMDGYL 300 Query: 293 VKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSK 352 E +ER P +RL EL +I G+ GYFLIV +F ++ Sbjct: 301 RHLTFERAKERYGDPLPQT---------VVDRLNHELGIIADEGYSGYFLIVQDFTDAAR 351 Query: 353 DNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRD 412 + V VGPGRGS AGS V+Y L IT++DPLE+DLLFERFLNPERVSMPD D+DF R+ Sbjct: 352 ELDVRVGPGRGSAAGSCVSYCLGITNVDPLEYDLLFERFLNPERVSMPDIDIDFDDRGRE 411 Query: 413 QVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA 472 +VI++V + YG++ V QI+TFGTM AK +RDV RVL P D I+K+IP PG+ L Sbjct: 412 KVIDYVVEKYGQENVCQIVTFGTMGAKTAVRDVSRVLDIPLDRADEIAKMIPDGPGVDLE 471 Query: 473 KAFEAEPQLPEIYEA-DEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCD 531 +AF+ P + +A + EV ++ A LEG R+ G HA GV+IAP +I+D+ P+ Sbjct: 472 QAFDENPDFRALKDANNPEVSKMMQYAEVLEGSVRHTGVHAAGVIIAPGEISDYVPVSVA 531 Query: 532 EEGKH--PVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAI 589 + TQ+D VE GL+K DFLGL+TLT+I A+E++ R + L+I I Sbjct: 532 KSKGEEVVTTQYDGDWVEEFGLLKMDFLGLKTLTLIEDAVELVEDTR----DVDLNIDDI 587 Query: 590 PLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVD 649 PLDD+ +F++ QR +T ++FQ ES GM++ +++L+P D+IA+ AL+RPGP+++ + Sbjct: 588 PLDDEATFELFQRGDTVSIFQFESTGMREHLRKLKPTEIGDLIAMNALYRPGPMEN--IP 645 Query: 650 NFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLR 709 ++ RKHG+EE+ YP H L+ +LEPTYGI ++QEQVMQ+A+ L+G++LG AD+LR Sbjct: 646 TYVARKHGQEEVEYP-----HPLLEDILEPTYGIAVFQEQVMQMARELAGFSLGEADILR 700 Query: 710 RAMGKKKPEEMAKQRSVFAEGAE-KNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVS 768 RAMGKKK + M KQR F +G + +N I + A ++FD++ +FAGYGFNKSHSAAY+LV+ Sbjct: 701 RAMGKKKEKLMRKQREKFIKGCQAENDIPEDEADELFDIINEFAGYGFNKSHSAAYSLVA 760 Query: 769 YQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDD 828 Y+T +LKAHYP EFMAA MT +MDNT+K+ +++E MGL++LPP IN F V Sbjct: 761 YRTAYLKAHYPPEFMAAAMTNEMDNTDKLSKVLEEARSMGLEVLPPSINRSQSRFTVEQG 820 Query: 829 GE----IVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884 + + +G+ AIK GE I A+I+AR + G F +FDL D +N+R LE L Sbjct: 821 PDGAYRVRFGLAAIKNAGEKAINALIDAREEHGPFDSIFDLTKNVDLGTVNKRTLEALAQ 880 Query: 885 SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944 +GA D L HRA LM + A++ + GQ +FG E ++ + W Sbjct: 881 AGALDDLEGHRAQLMEIMDKAVRYGQKVQHDRMAGQNSLFGNGDAGTEAMQPGLPDVETW 940 Query: 945 PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGG------------VRLKDMHPTERGK 992 + L E E LG Y++GHP+++Y E + + + RG Sbjct: 941 AKSQRLKEEHEVLGFYVSGHPLDEYRAEADAFATAHFGEPDQLEQVIEQAAGGDGRNRGP 1000 Query: 993 VITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSG 1052 V T G++ TK G I T++D +G+ E+++F+ LD+ Q LE D +++ G Sbjct: 1001 VRTFCGIITEVDRNTTKSGKPIAFATIEDFTGQGEMVIFSSILDRVQPYLEVDNVVLAKG 1060 Query: 1053 QVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGT 1112 V G +K+ A+++ + + RE+ + +++ Q+ L RQ E G Sbjct: 1061 NVEV--RGGTVKVLAKDLTPMWKVREQMVSEVILTVDLDQVMPDELQTFRQLCER-TEGN 1117 Query: 1113 IPVHLYYQRADARARLRF-GATWRVSPSDRLLNDLRGLIGSEQVELE 1158 ++ + R + R + V P+ + + + G + + L+ Sbjct: 1118 CTLYFDVDAPELRGQERLRSRAYVVEPTAEFMRGAQRIFGPDNIALK 1164 >UniRef50_D2RIQ1 DNA polymerase III, alpha subunit n=3 Tax=Veillonellaceae RepID=D2RIQ1_ACIFE Length = 1138 Score = 1291 bits (3340), Expect = 0.0, Method: Composition-based stats. Identities = 473/1167 (40%), Positives = 676/1167 (57%), Gaps = 47/1167 (4%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 +FVHL H+ YS++DG + LV+ A LGMPALAITD + G+++FY AGIKP Sbjct: 3 QFVHLHTHTQYSLLDGSCRIPELVQYAKELGMPALAITDHGVMYGVIEFYQECEKAGIKP 62 Query: 65 IVGADFNVQCDLLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIID 117 I+G + + D+ L HL +LA N TGYQNL L+S G+ P ID Sbjct: 63 IIGCEVYITSGSHLDKSLETRSKLYHLILLAENRTGYQNLMKLVSIGEVEGF-YYKPRID 121 Query: 118 RDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRTGRP 176 +D L +EGLI LS G+V R +LRG ++ + Y + F D Y+LE+ G P Sbjct: 122 KDVLRRYSEGLICLSACIAGEVPRHILRGELETAEKTMLEYLDIFGRDHYYLEIQNHGLP 181 Query: 177 DEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSP 236 +E + LA+ G+ +VATND+ +I D +I + I DP+R R + Sbjct: 182 EEATVRQELRRLAQKHGIKLVATNDLHYIRKEDASGQDILLCIQTNTRYLDPQRMRFNND 241 Query: 237 QQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTED-YLVKR 295 Y++S EEM ELF + EAL NT+EIA+RCNV + G LP+FP T D YL K Sbjct: 242 SYYLKSREEMEELFPEDQEALDNTLEIAERCNVQLEFGHLLLPEFPLPPGETMDGYLRKL 301 Query: 296 AKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNG 355 +EG R +R+E EL +I QMG+ GYFLIV +FI +S+ + Sbjct: 302 CEEGFPSRYPE----------DDGTARKRMEYELGIIRQMGYSGYFLIVWDFINYSRRHD 351 Query: 356 VPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVI 415 +PVGPGRGS AGS+VAY IT +DPL+++L+FERFLNPERVSMPD D D C KR V+ Sbjct: 352 IPVGPGRGSAAGSIVAYLTGITSIDPLKYNLIFERFLNPERVSMPDIDTDICYVKRHLVV 411 Query: 416 EHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAF 475 +++A YG V+QIITFGT+AAKA ++DVGR + P V++++KLIP PG TL A Sbjct: 412 DYLARKYGESHVAQIITFGTLAAKAAVKDVGRAMDIPLNVVNQVNKLIPNTPGTTLKGAL 471 Query: 476 EAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLY----CD 531 E +L E+ + D + L+D A+K+EG+ R+ HA GVVI P ++TD+ PL D Sbjct: 472 EGSRELRELRDGDPSIAQLLDFAQKVEGMPRHTSTHAAGVVITPGELTDYVPLQITSSSD 531 Query: 532 EEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPL 591 +E ++ TQ+DK E GL+K D LGLRTLT+I+ AL+MI K + +DI I L Sbjct: 532 DEHEYICTQYDKDRSESLGLLKMDLLGLRTLTVIDDALKMIKKNQG----TEVDIRTIDL 587 Query: 592 DDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNF 651 D K+ ML + +T AVFQ+ES GM L+K+L P+ FED+I LVAL+RPGPL SGM ++F Sbjct: 588 HDPKTCRMLCKGDTAAVFQMESDGMTRLMKQLAPEGFEDLIPLVALYRPGPLGSGMAEDF 647 Query: 652 IDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRA 711 I +HGR Q H ++P++ TYG+ILYQEQVMQI L G+TLG AD+LRRA Sbjct: 648 IAGRHGRR-----TAQVLHPLMEPIVADTYGVILYQEQVMQIVSALGGFTLGEADILRRA 702 Query: 712 MGKKKPEEMAKQRSVFAEGAEK-NGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQ 770 MGKKK + + + F +GA+K +GI+ EL +IF L++ FAGYGFNKSHSAAYALV+Y Sbjct: 703 MGKKKAKLLDSMKEKFLDGAQKLHGISRELGSEIFALLQHFAGYGFNKSHSAAYALVAYH 762 Query: 771 TLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGE 830 T WLKA+YP E+MAA + + + +KV + C MG+++LPPDIN+ F V D Sbjct: 763 TAWLKANYPVEYMAAFLNSIITVADKVSWYIGVCRDMGIQVLPPDINTSEAGFSV-DGHT 821 Query: 831 IVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDR 890 I +G+GAIK VG+ + I+E R K G FR+ FD R D K+N+RV+E LI G+ + Sbjct: 822 IRFGLGAIKSVGDAAVTVILEERKKRGPFRDFFDFTRRVDLSKVNKRVVEALIKCGSMNG 881 Query: 891 LGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVL 950 G R+ L+ + AL+AA + GQ +FG + + P+ +L Sbjct: 882 FGLRRSQLLAIMDPALEAAASEQRDRITGQLGLFGE-EDIASANTIPIPNLPEIPKAEIL 940 Query: 951 DGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKR 1010 ERE +G Y+TGHP++ Y + R +R + + G+ I G++ R+ TK Sbjct: 941 RLERELIGFYVTGHPLDAYRNALRRLTPLIRCTE-ENYKDGERIAVGGIITDLRLRSTKN 999 Query: 1011 GNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREV 1070 G+R+ L+D +G L V+ F A + ++KDRI+++ G + D+ ++ A V Sbjct: 1000 GDRMASFVLEDLTGSLTVIAFPRAYAASRANIDKDRIVMIQGILKLDE--EQARIFANRV 1057 Query: 1071 MDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRF 1130 + EA A+ + + + + + +L G PV+L+ AD + +R Sbjct: 1058 EPLQEA----AKEVHLHIRPGKNTQAVQQQLGGIFAAFH-GKNPVYLHV--ADTKKVIRT 1110 Query: 1131 GATWRVSPSDR-LLNDLRGLIGSEQVE 1156 + V + + ++G +E Sbjct: 1111 NPRFWVDLDAPGFADAIERVLGKGSME 1137 >UniRef50_A8ZSF2 DNA polymerase III, alpha subunit n=6 Tax=Deltaproteobacteria RepID=A8ZSF2_DESOH Length = 1182 Score = 1289 bits (3337), Expect = 0.0, Method: Composition-based stats. Identities = 449/1167 (38%), Positives = 667/1167 (57%), Gaps = 30/1167 (2%) Query: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61 + P FVHL VH+ YS++DG+ + L+K+A GM A+AITD + G+V FY AG Sbjct: 6 TGPDFVHLHVHTAYSLLDGIIRIEALMKRAVEYGMGAVAITDHGTMFGVVSFYKEAVKAG 65 Query: 62 IKPIVGADFNVQCDLLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGP 114 IKP++G + V + D L+HL +LA GY+NL L S A +G+ P Sbjct: 66 IKPVIGCECYVAPRSITDRTPMDHDGLSHLVLLAETMEGYRNLCHLASIASLKGF-YHKP 124 Query: 115 IIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDR-YFLELIRT 173 ID++ L + GLI LS G+V + LL GN+ D FY+E + +FLE+ Sbjct: 125 RIDKELLKQYGNGLIGLSACLKGEVAQRLLEGNTEAADRAARFYQEALGENSFFLEVQNN 184 Query: 174 GRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRN 233 G P++ A E+++ +P+V TND ++D D + H++ + + G T+ D R R Sbjct: 185 GIPEQTRLNAALREMSDRLSIPLVGTNDCHYLDREDHNIHDLSLCLQTGKTIHDADRFRF 244 Query: 234 YSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLV 293 + Q + + EMC P A NTV IA RCNV + P F T T D L Sbjct: 245 ETDQLNFKPKHEMCTFLEPFPNAATNTVAIADRCNVELDFKTLHFPVFATPPGKTVDQLF 304 Query: 294 KRA-KEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSK 352 + +EG RL + + R YD RLE EL VI MGFP YFLIV +FI +K Sbjct: 305 EETVREGFARRLKAVARKNPDF--DREAYDRRLEFELSVITDMGFPSYFLIVADFIAHAK 362 Query: 353 DNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRD 412 +NG+P+GPGRGS AGS+V+YA+ ITDLDP+E LLFERFLNPER SMPD DVD C+ R+ Sbjct: 363 ENGIPIGPGRGSAAGSIVSYAMGITDLDPIEHGLLFERFLNPERKSMPDIDVDICIIGRE 422 Query: 413 QVIEHVADMYG-RDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL 471 +V ++ + YG D V+QIITFG+M ++AVIRDVGRV+G P VDRI+KLIP +L Sbjct: 423 RVYHYLVEKYGGSDYVAQIITFGSMKSRAVIRDVGRVMGIPLSDVDRIAKLIPM--NKSL 480 Query: 472 AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCD 531 +A EP L ++ ++ + L+ R LEG+ R+A HA GVVI +T++ PLY Sbjct: 481 DEALAEEPDLKKLVDSRPDFAELVAAGRALEGMPRHASTHAAGVVIGDKPLTEYLPLY-A 539 Query: 532 EEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPL 591 + +TQ+D VE GLVK D LGLR LT+I L+++ ++ G D++ + L Sbjct: 540 VKENEALTQYDMKCVEAIGLVKLDLLGLRNLTVIADTLKILQQQ----GRQVPDMSHLDL 595 Query: 592 DDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNF 651 D+K++ +L +TT VFQLES GMK+L+ +L+P F D+ ALVAL+RPGP+ SGM+ +F Sbjct: 596 ADEKTYQLLCAGKTTGVFQLESTGMKELLLKLKPTTFADITALVALYRPGPMGSGMLVDF 655 Query: 652 IDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRA 711 ++ +HGR+ + Y L+P+L+ TYG+I+YQEQVMQIAQ ++GYT+G AD LR+A Sbjct: 656 VECRHGRKRVEY-----LIPELEPILKETYGVIVYQEQVMQIAQAVAGYTMGTADDLRKA 710 Query: 712 MGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQT 771 MGKK +MA+ ++ F EGA GI+ A +++ ++ F YGFNKSHSAAYALV++QT Sbjct: 711 MGKKIAAKMAEHQATFIEGALARGIDKAKAETLYEQIKFFGEYGFNKSHSAAYALVAFQT 770 Query: 772 LWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEI 831 +LKAH+P E MAA++T+ + T VV + EC + +++LPPDIN F V D + Sbjct: 771 AYLKAHFPVELMAALLTSSTNKTIDVVKFIAECRALDIEVLPPDINESEVAFSVVGD-RL 829 Query: 832 VYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRL 891 +G+ A+K VGEG IEAI+E R G F +FDLC R K+N++VLE L+ GA D Sbjct: 830 RFGLLAVKNVGEGAIEAIVEERRANGRFVSIFDLCERVPLTKVNKKVLESLVKCGALDST 889 Query: 892 GPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLD 951 G RA + L DAL + + Q +F + + + W ++ L Sbjct: 890 GAGRAQMTAVLEDALAHGQTVQREKNDSQMSLFDMPGADAALNAPTLPDMPEWSDRQRLA 949 Query: 952 GERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRG 1011 E+E LG Y++GHP+ Y + +Y L + + G + TKRG Sbjct: 950 FEKEVLGFYVSGHPLAAYRDVLRKYANTDALT-LKEIADQSNVIIGGGITVVNRKTTKRG 1008 Query: 1012 NRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVM 1071 +++ I T++D G +EV++F D + + L +D ++ V G++ + S ++ A V+ Sbjct: 1009 DQMAIVTIEDMYGTVEVVVFPDLFEVVRGFLAEDALVFVQGKLESSEVSTAIQ--AERVV 1066 Query: 1072 DIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSG-TIPVHLYYQRADARARLRF 1130 +D A + + + ++ + D Q L +L + + H + +H+ A + Sbjct: 1067 PLDRAEDVWLPSVHCTIDPVKTDKQTLRKLHEVFKQHAGAYSAFLHITAPPGKAGTLIAL 1126 Query: 1131 GATWRVSPSDRLLNDLRGLIGSEQVEL 1157 T ++ L + + L+G V++ Sbjct: 1127 PDTMKLDSDAALFDKVNDLLGYSAVQV 1153 >UniRef50_D1BNX7 DNA polymerase III, alpha subunit n=3 Tax=Veillonella RepID=D1BNX7_VEIPT Length = 1135 Score = 1284 bits (3324), Expect = 0.0, Method: Composition-based stats. Identities = 474/1164 (40%), Positives = 690/1164 (59%), Gaps = 41/1164 (3%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 FVHL H+++S++DG+++ +V++A L PALAITD N+ + FY G+KP Sbjct: 3 PFVHLHSHTEFSLLDGISRLPDMVRRAKELNQPALAITDHGNMYAAIYFYKECMAQGVKP 62 Query: 65 IVGADFNVQCDLLGDEL--------THLTVLAANNTGYQNLTLLISKAYQRGYGAAGPII 116 I+G + V + D HL +LA GY+NL ++SKA G P Sbjct: 63 IIGCEVYVTENNRFDRPEGRSRERLKHLILLAETMEGYRNLVKIVSKASTEGMLYR-PRA 121 Query: 117 DRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRTGR 175 DRD L + ++G+I LS G++ + +L+ N + +Y E + D +FLE+ G Sbjct: 122 DRDLLRQYSKGIIALSACIQGEIPQYILQDNMEGAKRSIEWYIETYGKDNFFLEIQNHGL 181 Query: 176 PDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYS 235 P+E ++L++ GL +VA+ND ++ D DA +I+V I G + R + + Sbjct: 182 PEEAKAQEELIKLSKEYGLGIVASNDFHYVLKEDADAQDIKVCISTGRRRAEVDRLKFPN 241 Query: 236 PQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMST-EDYLVK 294 + Y++S +EM ELF IP A+ NT++IA+RCNV E+ LP F + T + YL K Sbjct: 242 DEFYLKSGDEMAELFGHIPGAIENTLKIAERCNVEFNFDEHHLPHFDVPEGETSKTYLRK 301 Query: 295 RAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDN 354 E + L+ + E E +RL+ EL VI MGF YFLIV +++++++++ Sbjct: 302 VC----EREIPRLYGETSE------ELQKRLDYELDVIGTMGFEDYFLIVWDYVRYAREH 351 Query: 355 GVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQV 414 + VGPGRGS AGS+VAY L IT LDPL++DLLFERFLNPERVSMPD D+DFC EKR Q Sbjct: 352 DILVGPGRGSAAGSVVAYLLGITGLDPLKYDLLFERFLNPERVSMPDIDIDFCYEKRGQA 411 Query: 415 IEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKA 474 IE+V YG+ VSQIITFGT AA+AVIRDVGRVL P V+RI+K+IP + G+TL KA Sbjct: 412 IEYVTRKYGQARVSQIITFGTEAARAVIRDVGRVLDLPLAEVNRIAKMIPNELGITLDKA 471 Query: 475 FEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEG 534 + +L +YEAD VK L D +KLEG+ RN+ HA GVVI+ + D P+ + Sbjct: 472 LQG-KELKALYEADPNVKELFDFGKKLEGIARNSSTHAAGVVISADPLDDHVPVQNANDE 530 Query: 535 KHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDK 594 VTQ+DK ++E GL+K DFLGLRTLT++ AL++I R + LD+ AIPLDDK Sbjct: 531 GF-VTQYDKDNIEELGLLKMDFLGLRTLTVMGDALKLIKANRGID----LDLDAIPLDDK 585 Query: 595 KSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDR 654 + D+L + +T+ VFQLES G+ L+ L+P+ FED+I LVAL+RPGPL SGMV +FIDR Sbjct: 586 AACDLLTKGDTSGVFQLESEGITKLVMDLKPEHFEDLIPLVALYRPGPLGSGMVADFIDR 645 Query: 655 KHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK 714 +HG++E++Y H L+P+L+ T+G+ILYQEQVMQIA + G++LG AD++RRAMGK Sbjct: 646 RHGKKEVTY-----LHPILEPILKDTFGVILYQEQVMQIASAMGGFSLGQADLMRRAMGK 700 Query: 715 KKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWL 774 KK + QR F +G+ KNGI+ +A ++FDL+ FAGYGFNKSHSAAYA ++YQT +L Sbjct: 701 KKESVLKAQRESFIQGSVKNGIDESVANEVFDLLVYFAGYGFNKSHSAAYAYIAYQTAYL 760 Query: 775 KAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYG 834 KAHY EFMAA MT+ M N +K+ ++ C + +K+L PDIN F V DD I +G Sbjct: 761 KAHYFPEFMAATMTSFMQNMQKLTYYINSCKKHNVKVLGPDINYSERSFAVQDD-AIRFG 819 Query: 835 IGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPH 894 +G IK VG+ I+ +I RN+ G + ++ D C R D K +N+R+LE LI G+ D + Sbjct: 820 LGGIKNVGDNAIDRLIRERNEHGLYTDIVDFCKRVDNKVVNKRLLESLIRCGSMDGFKEN 879 Query: 895 RAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGER 954 R L++ A + K A+G ++FG + E + I + + E L E+ Sbjct: 880 RNQLLHMYESAQAVGAKEQKDAAMGTMNLFGDMEEAVDFIP--VPNVEDLSEDDKLKDEK 937 Query: 955 ETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRI 1014 E G Y+TGHP+ Y KE+E L + G+ IT GL+ +TKR + Sbjct: 938 EYTGFYITGHPLQGYAKELEGLFELGALAENPEQYDGQTITFGGLIENKSDRMTKRNEVM 997 Query: 1015 GICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDID 1074 I ++D SG V+ F + QQ L D I+ V G+V D+ G+++ A + + Sbjct: 998 SILRIEDYSGAANVVAFPKVFSQSQQFLAVDMIVKVKGRVDADEK--GVQIIADRITPL- 1054 Query: 1075 EAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATW 1134 + A+ +AI + + + L++ L +G++P LY R R R+ Sbjct: 1055 KVNYSQAKQVAIHIYSQYDTPENSEVLKRVLTS-TAGSVPTSLYLHR--QRKRINLPPNM 1111 Query: 1135 RVSPSDRLLNDLRGLIGSEQVELE 1158 PSD + + ++G VE++ Sbjct: 1112 CFDPSDESIKAIEAILGEGSVEVQ 1135 >UniRef50_C9XRY5 DNA polymerase III alpha subunit n=38 Tax=Clostridia RepID=C9XRY5_CLODC Length = 1189 Score = 1284 bits (3324), Expect = 0.0, Method: Composition-based stats. Identities = 454/1214 (37%), Positives = 682/1214 (56%), Gaps = 85/1214 (7%) Query: 3 EPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGI 62 F HL VH++YS++DG ++ L+K+A L M ++AITD + G++ FY GI Sbjct: 2 NKDFAHLHVHTEYSLLDGFSRVKKLIKRAKELNMSSIAITDHGCMFGVIDFYKTAIKEGI 61 Query: 63 KPIVGADFNVQCDLLGDELT-------HLTVLAANNTGYQNLTLLISKAYQRGYGAAGPI 115 KPI+G + L D+ HL +LA N GY+NL ++S +Y G+ P Sbjct: 62 KPIIGCEVYTAARGLRDKDPNYDKYQGHLVLLAKNMEGYKNLIKIVSTSYVEGF-YYKPR 120 Query: 116 IDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPD-RYFLELIRTG 174 +D + L + N+G+I LS GDV R+L+ N + Y + F + +FLE+ Sbjct: 121 VDMEELKKHNKGIIALSACLAGDVARALMNRNYEKAKQFALDYRDIFGEENFFLEIQDHN 180 Query: 175 RPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNY 234 P+++ V+L++ G+P+VATNDV +++ D H++ + I G TL+DP R R Sbjct: 181 LPEQKEVNSGLVKLSKETGIPLVATNDVHYVNKEDSKIHDVLMCIQMGKTLNDPNRMRFG 240 Query: 235 SPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLV 293 S + Y++S EEM ELF EA+ NTV+IA CNV LP++ + + E YL Sbjct: 241 SDEFYLKSREEMEELFPYALEAIDNTVKIADMCNVEFDFNTIHLPKYDVPEGYTPETYLR 300 Query: 294 KRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKD 353 + GL+ER E ERL EL VI +MG+ YFLIV +FI +SK+ Sbjct: 301 ELCFNGLKERYDNP----------SNEILERLNYELDVIEKMGYVEYFLIVWDFINFSKE 350 Query: 354 NGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQ 413 N + VGPGRGS AGS+VAY LKITD+DP+++ LLFERFLNPER+SMPD D+DFC E+R++ Sbjct: 351 NNIIVGPGRGSAAGSIVAYTLKITDIDPIKYSLLFERFLNPERISMPDIDIDFCYERREE 410 Query: 414 VIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAK 473 VI++V YG D V+QIITFGTM AKA IRDVGRVL Y VD+++K IP GMT+ K Sbjct: 411 VIDYVKRKYGDDHVAQIITFGTMGAKAAIRDVGRVLDIGYNKVDKVAKEIPFALGMTIDK 470 Query: 474 AFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEE 533 A + P L E+Y+ D E K +I++++++EG+ R+A HA GVVI+ + ++ PLY ++ Sbjct: 471 ALDTNPNLKELYDQDPETKEIINISKQIEGMLRHASTHAAGVVISKNPVDEYVPLYKHQD 530 Query: 534 GKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRR-AKNGEPPLDIAAIPLD 592 TQF + +E GL+K DFLGLRTLT+I L++I K R KN +D + + D Sbjct: 531 A--ITTQFTMTTLEELGLLKMDFLGLRTLTVIRDTLDLIEKNRVIKNYTEKIDFSKMDYD 588 Query: 593 DKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFI 652 D K ++ML T VFQLES GM+ +K+L+PD FED++A ++LFRPGP+ S + +I Sbjct: 589 DPKVYEMLSSGNTLGVFQLESAGMRSFMKQLKPDNFEDIVAGISLFRPGPMDS--IPAYI 646 Query: 653 DRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAM 712 K ++++Y HE LKP++E TYG ++YQEQVMQ+ + L GY+ G +D++RRAM Sbjct: 647 KNKSNPKDVTY-----LHEKLKPIMEVTYGCLVYQEQVMQVVRDLGGYSYGRSDLVRRAM 701 Query: 713 GKKKPEEMAKQRSVFAE------------GAEKNGINAELAMKIFDLVEKFAGYGFNKSH 760 KKK + M ++R F G +NG+ E+A KIFD + FA Y FNKSH Sbjct: 702 SKKKMDVMEEERQYFIHGKFDEDGNIEIAGCIRNGVEEEIANKIFDDMIDFARYAFNKSH 761 Query: 761 SAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGL 820 +AAY +++Y+T +LK +YP EFMAA++T+ M NT+KVV + EC + + +LPPDIN Sbjct: 762 AAAYGVLAYETAYLKTYYPVEFMAALITSVMGNTDKVVEYIRECKALEIDVLPPDINKSF 821 Query: 821 YHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLE 880 F V D I +G+ A+K VG I II R G F +L DL R D K N+RV+E Sbjct: 822 SKFSVEGDN-IRFGLAAVKNVGVNIINNIIAERESNGLFVDLVDLVKRLDQKDTNKRVIE 880 Query: 881 KLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQ---- 936 LI GAFD + +RA+LM L++ K GQ +F + E + Sbjct: 881 SLIKCGAFDNISENRASLMAGYESLLESVSMDRKKNVQGQISLFDAFGDSEEDSDFQQIY 940 Query: 937 SYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVG--GVRLKDMHPTER---- 990 S Q + E+ L+ E+E LG+Y++GHP++Q+ KE++ +L + E Sbjct: 941 SLPKRQEYEERERLNLEKEVLGMYVSGHPLSQFEKELQEKTSMDNGKLNSLKEEEESYLQ 1000 Query: 991 --GKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRIL 1048 + G++V + TKR + L+D G +E+++F L KY +L +D I+ Sbjct: 1001 MNETDVIMGGMIVTKTIKTTKRNEIMAFIELEDLYGAIEIIVFPQLLQKYNVILNEDNII 1060 Query: 1049 IVSGQVSFDDFSGGLKMTAREVMDI-------------------DEAREKYARGLAISLT 1089 V G +S + K+ ARE+ DI + + + + L + + Sbjct: 1061 YVKGTLSIKE-GENAKLIAREIKDINDDTDFADRNYNSGRTRNVENIKPESGKKLYLKID 1119 Query: 1090 DRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVS-----PSDRLLN 1144 D N + + G ++LY + + ++++ D +N Sbjct: 1120 SMSDTDTTNNIV--EIAKQYPGNDSIYLYPMDENINGK---RKAYKMTGALTCICDEFIN 1174 Query: 1145 DLRGLIGSEQVELE 1158 +L L+ + ++++ Sbjct: 1175 NLEELLPKDNIKVK 1188 >UniRef50_Q1IN02 DNA polymerase III, alpha subunit n=2 Tax=Acidobacteria RepID=Q1IN02_ACIBL Length = 1159 Score = 1280 bits (3313), Expect = 0.0, Method: Composition-based stats. Identities = 450/1171 (38%), Positives = 686/1171 (58%), Gaps = 33/1171 (2%) Query: 3 EPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGI 62 P FVHL +H+DYSM+DG + LV + LG PA+A+TD N+ G V F A G+ Sbjct: 2 PPEFVHLHLHTDYSMLDGASDVEKLVARVKELGQPAVAMTDHGNIYGAVHFQNAAKEKGV 61 Query: 63 KPIVGADFNVQCDL------LGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPII 116 K I+G + + GD+ HL VLA N GY+NL ++S+A G+ P + Sbjct: 62 KAILGCELYICQKENHREAPEGDKYNHLIVLAENEEGYRNLVKIVSEASLHGF-YYKPRV 120 Query: 117 DRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRTGR 175 +++L E ++GLI LS G+V L G + + + F + ++LE+ G Sbjct: 121 SKNFLAEHSKGLIGLSACLKGEVAERLTEGKYEAAKKAATTFGDIFGANNFYLEIQDQGL 180 Query: 176 PDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYS 235 +E+ +L + G P+VATND ++ D A ++ V I G ++ D R + + Sbjct: 181 EEEKRIHQGLFDLEKDLGYPMVATNDSHYLCEDDSHAQDVMVCIQTGKSIHDTNRMKFST 240 Query: 236 PQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGD-MSTEDYLVK 294 Q +++S EM ++F LA T+EIA+RCNV + + P+F + MS + Y Sbjct: 241 NQFFVKSAHEMSQVFTGADRVLARTMEIAERCNVKLEKVKNPFPRFDVPEGMSIDSYFED 300 Query: 295 RAKEGLEERLAFLFPDEEERLKRR--PEYDERLETELQVINQMGFPGYFLIVMEFIQWSK 352 A+ G+ +R+ + + R EY+ERL E+ I +M FPGYFLIV +FI++++ Sbjct: 301 VARRGMAKRMNLMRDLQSAGRLRHTFAEYEERLNFEIDTIKKMQFPGYFLIVWDFIRYAR 360 Query: 353 DNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRD 412 +N +PVGPGRGS AGSLVAYA+ ITD+DPL+ +LLF+RFLNPER+SMPD DVDFCM +R Sbjct: 361 ENNIPVGPGRGSAAGSLVAYAMTITDVDPLQNNLLFQRFLNPERISMPDIDVDFCMNRRG 420 Query: 413 QVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA 472 +VI++V + YGRD V+QIITFGTMAAKA I+D GR + PY VDR++K++P +T+ Sbjct: 421 EVIKYVTEKYGRDQVAQIITFGTMAAKAAIKDCGRAMDIPYAEVDRVAKMVPTTINITID 480 Query: 473 KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDE 532 A + P L YE++ +VK LID A++LEG+ RN+G HA VVIAP +TD PL+ Sbjct: 481 GALKDSPMLATAYESEPQVKELIDTAKRLEGLVRNSGVHASAVVIAPQPLTDLVPLHK-T 539 Query: 533 EGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLD 592 + VT +D VE GL+K DFLGL TLTI++ AL++I++ + +++ +P D Sbjct: 540 KNDEIVTAYDMKAVEKMGLLKMDFLGLTTLTILDDALKLIDQTQGV----KIELEKLPFD 595 Query: 593 DKKSFD-MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNF 651 DK++++ + T+ VFQ ES GM+D++++ +PD ED+ AL AL+RPGP+Q GM+D+F Sbjct: 596 DKQTYERIFHSGYTSGVFQFESSGMRDVLRKYKPDTVEDLTALNALYRPGPIQGGMIDDF 655 Query: 652 IDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRA 711 I+RK GR ++ Y H+ LK +L T G+I+YQEQVMQIA L+GY+LG AD+LRRA Sbjct: 656 INRKWGRAKVDY-----FHDDLKTILVETLGVIVYQEQVMQIANKLAGYSLGDADLLRRA 710 Query: 712 MGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQT 771 MGKK +EM KQR F +GA G + +L + IFDL+E+FAGYGFNKSHSAAYAL++Y T Sbjct: 711 MGKKDAKEMEKQRDRFTKGAIDRGYDKQLTVHIFDLMEQFAGYGFNKSHSAAYALLAYHT 770 Query: 772 LWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEI 831 +LK H+P EFMAA++T+ +T+ VV ++EC MG+++ PPD+N L F D G I Sbjct: 771 AYLKTHFPIEFMAALLTSVSGSTDDVVKYINECRDMGIEVRPPDVNVSLASFTP-DQGAI 829 Query: 832 VYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRL 891 +G+ AIK +G IE+I+ AR G F F+ C + D + LN+RV+E LI SGA D L Sbjct: 830 RFGLSAIKNLGHNAIESIVTARQAIGKFSSFFEFCEKVDLRLLNKRVVESLIKSGAMDPL 889 Query: 892 GPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQ--SYASCQPWPEQVV 949 G R+ L + A++AA + + GQ +FGV EEP ++ S + W E Sbjct: 890 G-RRSQLFAVIDKAMEAAQKTQRDAESGQHGLFGVFDEEPVAGKKVDSLPNVPDWDEHQR 948 Query: 950 LDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTE----RGKVITAAGLVVAARV 1005 L E+E LG ++TGHP+ +Y ++ + + +D+ +G+ G++ +V Sbjct: 949 LANEKEILGFFITGHPMEKYKDKLADF-RAMSTEDLKNMRTSTAKGEEYYVGGVMSGVKV 1007 Query: 1006 MVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKM 1065 +K+G+ + TL+D G + + F + + L+ + ++V G + ++ + K+ Sbjct: 1008 AKSKKGDMYALGTLEDIHGAVSFLCFNENYKRLVDKLKLEVPVLVKGAIRIEEDNP-PKI 1066 Query: 1066 TAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADAR 1125 +++ +D A K + + + + + L+ L GT V + Sbjct: 1067 MVSDIIPLDTAVPKLPQKVRVRVPLNSSTEGTLDALHGIFGE-CKGTAKVLFDLEMPGDF 1125 Query: 1126 ARLRFGATWRVSPSDRLLNDLRGLIGSEQVE 1156 + ++ V + + L G V Sbjct: 1126 LVVMEAESYNVQADRAFVARVEELCGRGAVR 1156 >UniRef50_Q1MRR3 DNA polymerase III, alpha subunit n=3 Tax=Desulfovibrionaceae RepID=Q1MRR3_LAWIP Length = 1169 Score = 1274 bits (3298), Expect = 0.0, Method: Composition-based stats. Identities = 470/1180 (39%), Positives = 691/1180 (58%), Gaps = 53/1180 (4%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS FVHL HS+YS++DG + L + GMPA A+TD NL FY Sbjct: 1 MSN--FVHLHCHSEYSLLDGAIRLDALCARTKEFGMPAAAVTDHGNLFAATHFYSICKEY 58 Query: 61 GIKPIVGADFNVQCDLLGD------ELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGP 114 GIKPI+G + V D HL +LA N GY NL L+++ Y G+ P Sbjct: 59 GIKPIIGCEVYVTKDHADKLSKFSKARHHLILLARNKEGYHNLVKLVTRGYLDGFHY-KP 117 Query: 115 IIDRDWLIELNEGLILLSGGRMGDVGRSLLR--------GNSALVDECVAFYEEHFPDRY 166 +D+ L + + G+ LS G++ R+++ G Y +P ++ Sbjct: 118 RVDKTLLKQFSSGITALSACLAGELPRTIMGKNIFVEKGGTFDDAISIAQEYASIYPGQF 177 Query: 167 FLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLD 226 +LE+ P+++ ELAE LP+VATND ++++ D +AH+I + + + Sbjct: 178 YLEVQANMLPEQQKVNEKLYELAEYTNLPLVATNDCHYLNADDVEAHDILLCVQTQAKFN 237 Query: 227 DPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM 286 D R R + Y +S EEM + F+ +P A+ NT++IA+ C+V + + P + Sbjct: 238 DTDRMRFNATDLYYKSSEEMEKAFSHLPIAIENTIKIAESCSVEMDFSKNLFPVYELPKG 297 Query: 287 -STEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVM 345 + +D + A+EGL++RL ++P++++ Y +RLE EL +I +MGFPGYFLIV Sbjct: 298 VTPDDEFRRLAREGLQKRL-EVYPNKKQLTTEN--YWKRLEQELDIICKMGFPGYFLIVQ 354 Query: 346 EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405 +FI W+KDN +PVGPGRGS GSLVA+AL+IT++DPL ++LLFERFLN ER+S+PD DVD Sbjct: 355 DFINWAKDNNIPVGPGRGSATGSLVAWALRITNIDPLPYNLLFERFLNIERISLPDIDVD 414 Query: 406 FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465 FC +KR VI +V + YG ++V+QI TFG M AKAV+RD+GRVL + D I+KLIP Sbjct: 415 FCEDKRGDVIRYVMNKYGVNSVAQITTFGKMKAKAVVRDIGRVLDMSFKETDNIAKLIPD 474 Query: 466 DPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDF 525 D MT+ KA E EP+L +Y + +K L+D++ KLEG+ R+A HA GVV++ + ++ Sbjct: 475 DLHMTILKAMEVEPKLQALYNEEPHIKRLLDISMKLEGLVRHASTHAAGVVVSDKPMDEY 534 Query: 526 APLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLD 585 PLY ++G+ VTQFD VE GLVKFDFLGLRT+T+I+ L+ I + G+ P + Sbjct: 535 LPLYRGKKGE-LVTQFDMKMVEKVGLVKFDFLGLRTMTLIHTTLKTIKDQ----GKIPPN 589 Query: 586 IAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQS 645 + +PLDD K++++L + +T VFQ+ES GM+ ++ L+P+CFED+IA++AL+RPGPL S Sbjct: 590 LDTLPLDDPKTYELLSKGDTDGVFQVESSGMRQYLRMLKPNCFEDLIAMLALYRPGPLGS 649 Query: 646 GMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGA 705 GMVD FI RKHG I YP SLK L+ TYG+I+YQEQVMQIAQ+++GY+LG A Sbjct: 650 GMVDEFIKRKHGTVTIEYPL-----PSLKDCLKDTYGVIVYQEQVMQIAQIVAGYSLGEA 704 Query: 706 DMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYA 765 D+LRRAMGKK PE MAK+R+ F EGA KN + +A IFDL+EKFA YGFNKSHSAAYA Sbjct: 705 DLLRRAMGKKNPEAMAKERTRFVEGAIKNNVTESIASDIFDLMEKFAEYGFNKSHSAAYA 764 Query: 766 LVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHV 825 L+SY T +LKAH+ EFMAA++T++ N K++ C MG+ IL PDI + F + Sbjct: 765 LISYHTAYLKAHFTLEFMAALLTSESGNQNKILKYTAACKDMGIDILKPDIQTSCREF-I 823 Query: 826 NDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMS 885 D IV+G+ AIK VG+ IE II R K G F L D+ R + KK+ RRVLE L+ Sbjct: 824 VKDNSIVFGLCAIKNVGDDAIEKIITTRKKDGPFLSLLDMSFRVNLKKVTRRVLESLVKG 883 Query: 886 GAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADM--FGVLAEEPEQIEQSYA---- 939 GA D G RA ++ +L + + K E Q + F E + Sbjct: 884 GACDSFGCSRAGMLTALDKIIARTYKKIKDEQSNQGSLLAFAPKIESVSLPGIGFTCEEQ 943 Query: 940 SCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGL 999 + W E L E+E LG +LT HP+ Y +EI R +G L+++ I +A + Sbjct: 944 NMPEWDEDEKLLYEKEALGFFLTSHPLQTYRQEIYR-LGLQPLEEVREMNDKITIKSAII 1002 Query: 1000 VVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDF 1059 V R ++ KRGNR+ ++D + EV F++ L K ++LL ++ L+++ + + Sbjct: 1003 VNNIREILNKRGNRMAFVRVEDLTASAEVTFFSEELQKSRELLSSNQPLLLTATIDSRES 1062 Query: 1060 SGG-------------LKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLE 1106 + +K+ A V + A + ++ + ++ + L+ L+ Sbjct: 1063 TQNDTIDESDDTQLRSIKLRAISVESLSSACQNSELPISYYVDKNRLTTSGIEELKAILD 1122 Query: 1107 PHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDL 1146 H+ G VHL + + ++R G++W VSPS D+ Sbjct: 1123 KHK-GQTEVHLIFSLDNINCQVRLGSSWNVSPSPAFQQDM 1161 >UniRef50_C5V5V8 DNA polymerase III, alpha subunit n=2 Tax=Gallionellaceae RepID=C5V5V8_9PROT Length = 1204 Score = 1274 bits (3297), Expect = 0.0, Method: Composition-based stats. Identities = 588/1218 (48%), Positives = 792/1218 (65%), Gaps = 74/1218 (6%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M P FVHLR+HS+YS+ DG+A+ V A A GMPALA+TD +N GLVKFY G Sbjct: 1 MPSPVFVHLRLHSEYSITDGMARIDEAVDAAIADGMPALALTDLSNFSGLVKFYKKTRGK 60 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 G+KP+ G D + + D L +L ++ GY L L+S+AY + R+W Sbjct: 61 GLKPVAGVDVFITNEADRDRPYRLLLLCQSSEGYLRLCRLLSRAYLSNQYRERAELRREW 120 Query: 121 LI-ELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEE 179 E EGLI LSG +GDVG +L+ GN A + F DRY++E+ R G DE Sbjct: 121 FKDEGTEGLIALSGAHLGDVGCALMSGNVAEARRYAQGWAALFEDRYYIEVQRAGFADEA 180 Query: 180 SYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQY 239 +Y+ AA LA LPVVAT+ V+F+ S+DF AHE RV I +G+ L+D +R + ++ QQY Sbjct: 181 AYVDAATALAAGLDLPVVATHPVQFLTSADFKAHEARVCIAEGYVLNDKRREKAFTAQQY 240 Query: 240 MRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMST-EDYLVKRAKE 298 +++ EM ELFAD+PEAL N+VEIA+RCN+T+ LG+ LP FPT + +D+++ ++ Sbjct: 241 FKTQAEMSELFADLPEALQNSVEIARRCNLTLVLGKPRLPDFPTPSGESLDDFMLSESER 300 Query: 299 GLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKD----- 353 GL +R+AFL+PDE ER ++ P+Y ERL E+ I +MGFPGYFLIV +FI+W+K Sbjct: 301 GLADRMAFLYPDEAERAEKFPQYHERLLFEINTIIKMGFPGYFLIVADFIRWAKAYRSDA 360 Query: 354 --NGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKR 411 NGVPVGPGRGSGAGSLVAY L ITDLDPL ++LLFERFLNPERVSMPDFDVDFC + R Sbjct: 361 FPNGVPVGPGRGSGAGSLVAYCLLITDLDPLRYELLFERFLNPERVSMPDFDVDFCQDGR 420 Query: 412 DQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPD--PGM 469 + VI++V YG VSQI TFGTMA+KAVIRDVGRV+ PYG DR+SK IP + + Sbjct: 421 ELVIDYVKQKYGAACVSQIATFGTMASKAVIRDVGRVMEFPYGLCDRLSKAIPLEGVKPV 480 Query: 470 TLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLY 529 +L KA E EP++ I E++E V L+++A +LE +TRN G HAGGVVIAP K+TDF PLY Sbjct: 481 SLQKAREMEPEINAIAESEEGVPELLELAMRLEDLTRNVGMHAGGVVIAPGKLTDFCPLY 540 Query: 530 CDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGE-------- 581 C + G V+QFDK DVE GLVKFDFLGLRTLTII+WA+ I++ +A++ + Sbjct: 541 CADGGASVVSQFDKDDVEAIGLVKFDFLGLRTLTIIDWAVRHIHRLQARDRKGLPRTTNE 600 Query: 582 ---------------------------PPLDIAAIPLDDKKSFDMLQRSETTAVFQLESR 614 I AIPLDDK S+D+L++ TTAVFQLESR Sbjct: 601 TTTELLREGSRIEDQTQVSTQSSVHNPQLFSIEAIPLDDKPSYDLLKKCNTTAVFQLESR 660 Query: 615 GMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLK 674 GMKDLIKRLQPD FED++ALVALFRPGPL+SGMVD+F+DRKHGR Y H L+ Sbjct: 661 GMKDLIKRLQPDTFEDIVALVALFRPGPLESGMVDDFVDRKHGRATADY-----FHPELE 715 Query: 675 PVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKN 734 L+PTYG+I+YQEQVMQI+Q++ GYTLGGADMLRRAMGKK P EMA+QR +F GA Sbjct: 716 ASLKPTYGVIVYQEQVMQISQIIGGYTLGGADMLRRAMGKKDPAEMARQRDIFVSGALNR 775 Query: 735 GINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNT 794 I+ +LA ++FDL+E FAGYGFNKSHSAAYALV+YQT +LKAH+PA FMAA ++ D+DNT Sbjct: 776 EIDKDLATRLFDLMEMFAGYGFNKSHSAAYALVAYQTAYLKAHHPAAFMAATLSGDLDNT 835 Query: 795 EKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARN 854 EKV + + G+ IL PD+NS Y F D+ I YG+GAIKG GE I +I++AR Sbjct: 836 EKVRTFYADTLQQGITILLPDVNSSGYAFSPTDEKTISYGLGAIKGTGEAAIASIVKARA 895 Query: 855 KGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAK 914 G F++LFD C R D + +NRR +E LI +GAFD + HRAALM S+ AL +ADQ A Sbjct: 896 T-GPFKDLFDFCRRVDKRAVNRRTIETLIRAGAFDSINDHRAALMASVDAALASADQQA- 953 Query: 915 AEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIE 974 +I Q +FG + IEQ + W + L E+ +LG+YL GHP +Y KE+ Sbjct: 954 -RSINQDSLFGEDDADAVLIEQK-SDVPRWSLREQLAFEKVSLGIYLGGHPYQEYEKELT 1011 Query: 975 RYVGGVRLKDMHP-------------TERGKVITAAGLVVAARVMVTKRGNRIGICTLDD 1021 ++ VRL D+ P + RG + AG+V R+ T+RG R+ + TLDD Sbjct: 1012 NFIK-VRLGDLTPAFLGKNSGSGGYVSRRGVQVRLAGIVSGLRLQQTRRG-RMAVITLDD 1069 Query: 1022 RSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYA 1081 S ++E+ +F + +K +Q + +D +L+V G+ S D++SG ++++ E+ + +AR ++A Sbjct: 1070 GSAQIELTVFNEEYEKSRQWIVEDELLVVEGKASLDEYSGNIRVSGEELFNFAQARSRFA 1129 Query: 1082 RGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDR 1141 R L + + +L++ L+P G V + Y A +LR G W+V+ + Sbjct: 1130 RQLELHCNSSVN----IAQLKEILKPWSGGACAVQINYNNEVAVCQLRLGTDWQVTLDEA 1185 Query: 1142 LLNDLRGLIGSEQVELEF 1159 L+ DL L+ +++ + Sbjct: 1186 LMRDLGVLLQPGNMQVVY 1203 >UniRef50_C6J6J2 DNA polymerase III (Fragment) n=4 Tax=Bacteria RepID=C6J6J2_9BACL Length = 1110 Score = 1274 bits (3296), Expect = 0.0, Method: Composition-based stats. Identities = 436/1090 (40%), Positives = 630/1090 (57%), Gaps = 59/1090 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL VHS+YS++DG A+ LV KAAA GM ALA+TD + G V FY GIKPI Sbjct: 39 FVHLHVHSEYSLLDGAARLEDLVAKAAASGMKALALTDHGVMYGAVPFYKLCKKHGIKPI 98 Query: 66 VGADFNVQCDLLGDEL-------THLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDR 118 +G + + HL +LA N TGY+NL L S + G+ P ID Sbjct: 99 IGCEVYFTAGSRKERGSRKDQPIHHLILLAKNETGYRNLMKLCSIGHLEGFHY-KPRIDW 157 Query: 119 DWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDE 178 D L EGL+ LS G+V LLRG+ + Y+ F + ++LEL G P++ Sbjct: 158 DALQRHREGLVCLSACLGGEVPFHLLRGHYEEAKKAALRYQAAFGEDFYLELQDHGIPEQ 217 Query: 179 ESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQ 238 + V+LA G +V TND ++ D + ++ + + G T+DD R + ++ Q Sbjct: 218 KKVNPLLVQLAGEIGAELVVTNDAHYLSKEDAEVQDVLICVGTGKTVDDEDRLKMHTNQL 277 Query: 239 YMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF-PTGDMSTE-DYLVKRA 296 Y+++ EEM +LF +PEA ANT +IA C + + + LP + P + T YL + Sbjct: 278 YLKTAEEMAQLFPHLPEAYANTAKIADSCELELEFDRHILPAYRPIPEGHTAGSYLAELC 337 Query: 297 KEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGV 356 ++GL +R L D L R + ++RL EL++I MGF YFLIV +FI ++ NG+ Sbjct: 338 QQGLVDRYGEL--DVWRDLTEREKLEQRLRYELEIIASMGFSDYFLIVWDFIAFAHRNGI 395 Query: 357 PVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIE 416 GPGRGS AGSLVAY L+ITD+DP++++LLFERFLNPERV+MPD D+DF E+RD+VI Sbjct: 396 ATGPGRGSSAGSLVAYVLRITDVDPIKYNLLFERFLNPERVTMPDIDIDFSDERRDEVIA 455 Query: 417 HVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFE 476 +V D YG + V+QIITFGTMAA+A +RDVGR L P+G VD+++KLIP GMT+ +A + Sbjct: 456 YVVDKYGAEHVAQIITFGTMAARAAVRDVGRALNVPFGEVDKVAKLIPGHLGMTIERALK 515 Query: 477 AEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKH 536 P L +Y+ E VK L+DMA K+EG+ R+A HA GVVI+ +TD PL E Sbjct: 516 ESPDLKAMYDGSERVKRLLDMAMKVEGMPRHASTHAAGVVISRDPLTDAVPLQEGSE-HT 574 Query: 537 PVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKS 596 +TQ+ ++E GL+K DFLGLRTL+II + I ++ D +P +D + Sbjct: 575 ALTQYSMENLEAIGLLKMDFLGLRTLSIIERCMNWIKEQSGDAP----DFRLVPDNDPAT 630 Query: 597 FDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKH 656 ++ML R ETT VFQLES GM+ ++K ++P FED+I+L+AL+RPGP++ + +I KH Sbjct: 631 YEMLGRGETTGVFQLESTGMRRVLKEMKPSVFEDIISLLALYRPGPME--FIPKYIAGKH 688 Query: 657 GREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKK 716 G+ + YP H L+P+L+ TYGII+YQEQ+MQIA ++G++LG AD+LRRA+ KKK Sbjct: 689 GQITVEYP-----HPDLEPILKDTYGIIVYQEQIMQIASRMAGFSLGEADLLRRAVSKKK 743 Query: 717 PEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKA 776 E + +QR F G+ + G + A ++D++ +FA YGF ++H+AAY ++++QT +LKA Sbjct: 744 REVLDEQRGHFVSGSVQQGYTEDEANVVYDMIVRFADYGFARAHAAAYGVLAFQTAYLKA 803 Query: 777 HYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDD-------- 828 HYP +FMA+++TA + KV + EC RMG+ +LPPD+N F Sbjct: 804 HYPVQFMASMLTAVTGSHRKVAEYIVECRRMGIVVLPPDVNESSVLFTPQVGAGSADAAL 863 Query: 829 -----------------------GEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDL 865 G I +G+ AIK VG IE+I+ R + F L D Sbjct: 864 SGEAKGRDAKDGHAGSGQEPPALGVIRFGLAAIKNVGTQAIESILRERKER-PFDSLLDF 922 Query: 866 CARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFG 925 C R D + N+RV+E LI GAFD L HRA L+ L + ++AA + K Q +F Sbjct: 923 CRRVDLRTCNKRVIESLIQGGAFDSLPGHRAQLLAMLDETVEAALKWRKERDELQIQLFD 982 Query: 926 VLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDM 985 + IE Y + LD ERE LGLYL+GHP++ + + G RL D+ Sbjct: 983 FVESPNWDIE--YPDVPKFTAAQQLDLERELLGLYLSGHPLDDF-DALLEGEGVDRLMDL 1039 Query: 986 HPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKD 1045 AG+VV+ + + TK+G + L+D+ R EV+LF + + +EK Sbjct: 1040 AEAPDDTRTVVAGMVVSVKTITTKQGKAMAFMELEDQIERCEVVLFPEVWRRSAAHVEKG 1099 Query: 1046 RILIVSGQVS 1055 +L + G V Sbjct: 1100 ALLALRGVVQ 1109 >UniRef50_Q1PZM1 Similar to DNA polymerase III, alpha subunit n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZM1_9BACT Length = 1155 Score = 1271 bits (3288), Expect = 0.0, Method: Composition-based stats. Identities = 462/1174 (39%), Positives = 706/1174 (60%), Gaps = 43/1174 (3%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M FVHL VHS+YS++DG K LV KA MPALA+TD N+ G ++FY A A Sbjct: 1 MDTNNFVHLHVHSEYSLLDGACKIKDLVSKALHFKMPALALTDHGNMYGAIEFYEAAQSA 60 Query: 61 GIKPIVGADFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAA 112 GIKPI+G + V D+ L+H+T+LA N GY+NL L + AY G+ Sbjct: 61 GIKPIIGYEAYVAQGGRLDKESKNGKETLSHITLLAENYEGYRNLLKLSTSAYLEGF-YY 119 Query: 113 GPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDR-YFLELI 171 P ID++ L + G+I LSG ++ R L Y E F + ++LE+ Sbjct: 120 KPRIDKELLKSHSAGIICLSGCMASEINRHLSFDRHDDAMNLAIEYLELFGENHFYLEIQ 179 Query: 172 RTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRP 231 P +E + AA ++ + +P+VATNDV +++ D AH+ + I+ G + D +R Sbjct: 180 NNKIPLQEKLVSAAFKIGKTLNIPLVATNDVHYMNIDDAVAHDALLCINTGKRVSDRQRL 239 Query: 232 RNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF-PTGDMSTED 290 R + + Y ++ +EM LF +IP AL NT+ IA+RC+V + G+ LP+F P +S + Sbjct: 240 RFDTNEFYFKNYQEMHALFKEIPHALENTLHIAERCDVKMDFGKLHLPKFTPPEGISNKA 299 Query: 291 YLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQW 350 YL K +EG+ + + P ERL+ EL+VI + GF YFLIV +FI + Sbjct: 300 YLRKLCEEGVIRKYGAILPH----------ISERLDHELKVIEKTGFVEYFLIVWDFIHY 349 Query: 351 SKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEK 410 + +P GRGSGAGS+VAY L IT++DP+E DLLFERFLN ER+SMPD D+DFC E Sbjct: 350 ANTLNIP-ATGRGSGAGSIVAYVLNITNIDPIENDLLFERFLNAERISMPDLDIDFCAEG 408 Query: 411 RDQVIEHVADMYGRD-AVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGM 469 R+++I +V + YG D V+QIITFGTM AKAVIRDVGRVL P VD+I+KLIP + Sbjct: 409 REEIIRYVREKYGGDSNVAQIITFGTMKAKAVIRDVGRVLDIPLSEVDKIAKLIPNTLNI 468 Query: 470 TLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLY 529 TL +A E EP L I +A+++ K L D+++KLEG+ R+A HA G+VI+ +T++ PL Sbjct: 469 TLEEALEQEPALKAICQAEKQFKELFDISKKLEGLCRHASVHAAGIVISDEPLTEYVPL- 527 Query: 530 CDEEGKHPVTQF-DKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAA 588 ++G TQ+ D+ V+ GL+K DFLG+R LT+I AL++I++ +D+A Sbjct: 528 -AKKGDAVTTQYYDEILVDKIGLLKADFLGVRKLTVIKRALQLIHE----TTREIIDLAK 582 Query: 589 IPLDDKKSFDMLQRSETTAVFQLE-SRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGM 647 IP+DDK ++ ML VFQ+E S+G K+L+K+L+PD F D++ LVAL+RPGPLQSGM Sbjct: 583 IPVDDKATYQMLSSGNVKGVFQVETSKGFKELLKKLKPDTFADILPLVALYRPGPLQSGM 642 Query: 648 VDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADM 707 VD+FI+RKHG+E + Y H +L+ +L+ TYG+ILYQEQVM+IA L+G+TL AD Sbjct: 643 VDSFINRKHGKEAVEY-----IHPTLELILKETYGVILYQEQVMRIANRLAGFTLNEADN 697 Query: 708 LRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALV 767 LR+AMGKKKPE MAK + F GA N I + A+KIF+L+E FAGYGFNKSHSAAYA++ Sbjct: 698 LRKAMGKKKPEIMAKFKDQFVNGAISNDIPKKTAIKIFELMEFFAGYGFNKSHSAAYAVI 757 Query: 768 SYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVND 827 +YQT +LK +YP ++M A ++ + NTEK++ +++C RM ++IL PD+N L F +++ Sbjct: 758 TYQTAYLKTNYPLQYMTAQLSCEKQNTEKIIDYIEDCRRMNIEILKPDVNESLSDFIISE 817 Query: 828 DGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGA 887 +I +G+G++K G+ IE+I+ AR KGG F + D C R D + +N++V+E L+ SG+ Sbjct: 818 GNKIRFGLGSVKNAGDKAIESIVSAREKGGKFSSILDFCKRVDLRTVNKQVIESLVKSGS 877 Query: 888 FDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF--GVLAEEPEQIEQSYASCQPWP 945 FD L RA L+ SL A++ K + GQ +F G + E + ++ PW Sbjct: 878 FDSLSDDRARLLASLDSAMELGSAVNKGKRKGQRALFDIGSAMDVIETGNTAISNTTPWN 937 Query: 946 EQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARV 1005 E + E+E+LG Y + P+++Y ++I + + ++ G + G++ + Sbjct: 938 ENEIRQAEKESLGFYFSSSPLSEYEEKI-KLLATNSSSEISELPEGTDVIIGGIITDIKK 996 Query: 1006 MVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKM 1065 TK+G+ + TLDD G ++ + F+ L +Y+ L + D ++ + G V + + +K+ Sbjct: 997 STTKKGDPMMYITLDDMEGAIKCIAFSKELKEYEPLAKIDAVVFICGNVGYKGSTPSVKI 1056 Query: 1066 TAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRA-DA 1124 E++ A ++ + + L D+ L +L+ ++ HR G P + + Sbjct: 1057 --NELIAGKNAFQRLVKSFGLRLEAAHFDETKLIQLKDLIKKHR-GACPFFIEIATPNNG 1113 Query: 1125 RARLRFGATWRVSPSDRLLNDLRGLIGSEQVELE 1158 +++ + + + +D L+ R L S+ + + Sbjct: 1114 SVQIKTSSQYSAAITDDFLSRTRELFDSQNLLIN 1147 >UniRef50_B8D1J8 DNA polymerase III catalytic subunit, DnaE type n=1 Tax=Halothermothrix orenii H 168 RepID=B8D1J8_HALOH Length = 1122 Score = 1269 bits (3284), Expect = 0.0, Method: Composition-based stats. Identities = 450/1162 (38%), Positives = 687/1162 (59%), Gaps = 55/1162 (4%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 FVHL VH++YS++DG + LVKK MP +AITD L G + FY GIKP Sbjct: 4 NFVHLHVHTEYSLLDGAIRLKDLVKKTKEYDMPGVAITDHGVLYGAIDFYKLARQYGIKP 63 Query: 65 IVGADFNVQCDLLGD----ELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 I+G + + E HL ++A N GY NLT ++S+++ G+ P +D+D Sbjct: 64 IIGCEVYLTPSSFRKKDTRERYHLLLIAQNREGYHNLTKIVSRSWLEGF-YYKPRVDKDL 122 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRTGRPDEE 179 L + +GLI LS G++ + +L+ ++ + YE F + ++LEL DE+ Sbjct: 123 LYQHRKGLICLSSCLQGEIPQLILKDRLQEAEQAIKEYEAIFGRESFYLELQDHNLGDEK 182 Query: 180 SYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQY 239 +EL+ G P+V TND +++ D H++ +A+ G T++D R + Y Sbjct: 183 LVNSRLIELSNKLGTPLVVTNDSHYLNREDASLHDVLLAMQTGKTINDENRLSFTGEEFY 242 Query: 240 MRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT--GDMSTEDYLVKRAK 297 +S +EM LF DI + NTV+IA+ ++ +++P FP GD + + L + + Sbjct: 243 FKSPDEMKSLFPDIEDTYLNTVKIAEMTDIDFDFNTFYIPDFPDAKGDKTPVEILRDKCQ 302 Query: 298 EGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVP 357 +GL+E+ L+ E ERL+ EL++I +MG+ YFLIV +F+ +++ G+ Sbjct: 303 QGLKEK----------GLEDNKEARERLQYELEIIEEMGYVSYFLIVWDFVNFARQKGIR 352 Query: 358 VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEH 417 VGPGRGS AGSLV+Y L IT ++PL++ L+FERFLNPERV+MPD D+DF E+RD++IE+ Sbjct: 353 VGPGRGSAAGSLVSYLLGITKINPLKYGLIFERFLNPERVTMPDIDIDF-DERRDEIIEY 411 Query: 418 VADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEA 477 V YGR+ V+QI TFGTMAA+A IRDVGRVL P VDRI+K++P +T+ +A + Sbjct: 412 VKQRYGREKVAQIGTFGTMAARAAIRDVGRVLDIPLRKVDRIAKMVPGR--VTIKEALKM 469 Query: 478 EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHP 537 L ++Y+ D EVK L+D A ++EG+ R+ HA GV+I P +++ PL +E Sbjct: 470 NDNLNKLYQQDSEVKRLLDYACRVEGMPRHISTHAAGVIIGPGDLSNIIPLQTQDEN--I 527 Query: 538 VTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSF 597 +TQF ++E GL+K DFLGLR LTIIN L +I+KR + +D+ IPL+D + + Sbjct: 528 ITQFHMENLEELGLLKMDFLGLRNLTIINKTLNLISKRYGRE----IDVDNIPLNDDRVY 583 Query: 598 DMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHG 657 MLQ +T VFQ+ESR +DL +RL+P+ F D+IAL+AL RPGPL S +V+ +I +HG Sbjct: 584 KMLQEGKTPGVFQMESRLFQDLNRRLKPEKFSDLIALLALGRPGPLGSNLVEQYIKSRHG 643 Query: 658 REEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKP 717 E SY H L+P+LE T+G+ILYQEQVM+IA L+GYT+G AD+LRR MGKKK Sbjct: 644 EIEPSY-----LHPELEPILEETFGLILYQEQVMEIASKLAGYTMGEADLLRRGMGKKKK 698 Query: 718 EEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAH 777 E ++K+R F EGA KNGI E+A KIFD +E FAGYGFNKSHS AYA+++YQT +LKA+ Sbjct: 699 ELISKERERFVEGAVKNGIEKEVAHKIFDQMEYFAGYGFNKSHSTAYAMLAYQTAYLKAN 758 Query: 778 YPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGA 837 YP+EFMAA+++ M+N +KV + EC MGL++LPPD+N + F DG+I +G+ A Sbjct: 759 YPSEFMAALLSTVMNNLDKVGQYIRECQEMGLRVLPPDVNRSGFEFETTPDGDISFGLKA 818 Query: 838 IKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAA 897 IK VG IEAIIE RN+ G + L D R DT ++N +V+E LI +G FD +R+ Sbjct: 819 IKNVGIKAIEAIIEERNRNGNYSSLEDFIERVDTGRVNLQVIESLIKAGVFDSFNTYRSQ 878 Query: 898 LMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQS--YASCQPWPEQVVLDGERE 955 ++ + + ++ A GQ F + +E+ + QS Y + P + L+ E+E Sbjct: 879 MLIKYEEIYEKLGSRSRNRAQGQTSFFDLFSEDEKFYNQSIEYPEIEELPLEERLNQEKE 938 Query: 956 TLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIG 1015 LG+YL+ HP++ + +I+ ++ G +T G+VV + +T+ ++ Sbjct: 939 YLGIYLSAHPLDPFKDKIDHFIS--TTSQDIKDYEGDKVTIGGVVVDFKEHITRTNKKMA 996 Query: 1016 ICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDE 1075 TL+D G ++V++F D ++ LEK L+++G+V DD S + + +++ +++ Sbjct: 997 FLTLEDWLGNIKVVVFPDLYNQLDINLEKGLKLLITGRV--DDGS----VISNKIISLEQ 1050 Query: 1076 AREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWR 1135 I + +D L L+ + +R G P+ + L G + Sbjct: 1051 D--------FIEIDVTSLDSDKLKELKNLCQQYR-GDCPLFINV----GDTCLLSGINYW 1097 Query: 1136 VSPSDRLLNDLRGLIGSEQVEL 1157 VS L + L+G V++ Sbjct: 1098 VSDGGAFLQKAKKLVGINNVKI 1119 >UniRef50_C8ND72 DNA polymerase III, alpha subunit n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8ND72_9GAMM Length = 1177 Score = 1266 bits (3275), Expect = 0.0, Method: Composition-based stats. Identities = 572/1182 (48%), Positives = 767/1182 (64%), Gaps = 38/1182 (3%) Query: 7 VHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIV 66 HL +HS++S+ D + + +V A + G A+A+TD NL G +KFY AGIKPI+ Sbjct: 5 THLHIHSEFSLSDSILRVGEIVDFAKSQGAEAIALTDRNNLYGALKFYKKARAAGIKPIL 64 Query: 67 GADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN- 125 G D V+ D L +LA N G+ +L L+S AYQ G + + Sbjct: 65 GCDLTVRDSDGTDN--QLILLAQNLKGFIHLCELVSFAYQYDQDHQGVAVHIERFTPTQC 122 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 185 EGLI LSGG GD+ R L R ++ ++ AF++ FPDRY+L+L R G+P E Y Sbjct: 123 EGLIALSGGIDGDLARFLRRRDAQGAEKRAAFWQGIFPDRYYLQLARHGQPGEAEYFDWC 182 Query: 186 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 245 + G+ VATN F + D+D HE+RV I +G+ D KRPR ++ + + S+ Sbjct: 183 RDAGRKLGIAAVATNLACFPTADDYDVHEVRVCISNGWLRADDKRPRYFTQKYHFTSDAV 242 Query: 246 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKRAKEGLEERL 304 M E FAD P+ LANT +A RCN+ + LG+ +LP FP D + E +L+ AK GLE RL Sbjct: 243 MAERFADAPQILANTHAVAARCNLELTLGKNYLPDFPLPDGVNIETFLIDSAKSGLELRL 302 Query: 305 AFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGS 364 A LFPDE ER +R YDERL EL VINQMGFPGYFLIV +FIQW+KD+ +PVGPGRGS Sbjct: 303 AQLFPDEAERAAKRAPYDERLAIELGVINQMGFPGYFLIVADFIQWAKDHDIPVGPGRGS 362 Query: 365 GAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGR 424 GAGSLVAYALKITDLDPL +DL FERFLNPERVSMPDFDVDFCME+RD+VIE+V+ YG Sbjct: 363 GAGSLVAYALKITDLDPLAYDLFFERFLNPERVSMPDFDVDFCMERRDEVIEYVSHKYGA 422 Query: 425 DAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAF------EAE 478 VSQI T GTMAAKAV+RDVGRVLG PY VD++ +PP G+TL A + + Sbjct: 423 QRVSQIATHGTMAAKAVLRDVGRVLGVPYPVVDKLVATVPPVLGITLPDALGRSTKSQDK 482 Query: 479 PQLP-----EIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEE 533 P+L E+YE DEE++ +ID+ +LEG+ RN GKHAGGVVIAPTK+TDF+ LY + Sbjct: 483 PELRSEAMQELYEKDEEMRDIIDIGLQLEGLARNVGKHAGGVVIAPTKLTDFSALYSESA 542 Query: 534 GKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDD 593 G TQFDK D+E GLVKFDFLGLRTLT+I+WAL IN RR + G+PPLDIA +PLDD Sbjct: 543 GAGIATQFDKDDIEAMGLVKFDFLGLRTLTVIDWALGHINARRTREGQPPLDIATLPLDD 602 Query: 594 KKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFID 653 +++ +LQ + TTAVFQLES GMK+LI++L+PD FED+IALVALFRPGPL SGMVD+FI+ Sbjct: 603 PQTYALLQSTRTTAVFQLESSGMKELIRKLRPDTFEDIIALVALFRPGPLGSGMVDDFIN 662 Query: 654 RKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMG 713 RKHG E+ YP H L+ +L+ TYG+++YQEQVMQ+AQ L+ Y+LG AD LRRAMG Sbjct: 663 RKHGLAEVEYP-----HPDLEGILQTTYGVMVYQEQVMQVAQKLANYSLGEADNLRRAMG 717 Query: 714 KKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLW 773 KKK EEMA+ + +F A + G+ + A IFDL+ KFA YGFNKSHSAAYAL+SYQT W Sbjct: 718 KKKAEEMARNKDIFVSRAVERGVPEKQATDIFDLMAKFAEYGFNKSHSAAYALLSYQTAW 777 Query: 774 LKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVY 833 LKAHYPAE MAAV+T++++ +K+V ++E MGL ++PP IN Y F V++ GEI+Y Sbjct: 778 LKAHYPAELMAAVLTSEIEKIDKIVRFINEARDMGLTVIPPCINRSQYTFTVSERGEIIY 837 Query: 834 GIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGP 893 G+GA+KGVGE I ++E R K G + L DLC R D KKLNR+ LE LI +G+FD + P Sbjct: 838 GLGAVKGVGEAAINILLEERAKNGDYTSLEDLCRRLDLKKLNRKTLETLIRAGSFDNIEP 897 Query: 894 HRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQS--YASCQPWPEQVVLD 951 +R AL ++ A+K A+QH + GQ DMFG+ + S + W + L Sbjct: 898 NRGALFAAVEQAIKLAEQHHRNRHQGQGDMFGLFGDSSRDQPPSLIMNPEEAWDLRQTLA 957 Query: 952 GERETLGLYLTGHPINQYLKEIERYVGGVRLKDMH--------PTERGK--VITAAGLVV 1001 E++TLGL+L+ HPI++ + + G L + PT RG + AG+V+ Sbjct: 958 EEKQTLGLFLSAHPIDEARDTLLQISRGRNLAQLQENMENWQRPTRRGDSIEVILAGVVI 1017 Query: 1002 AARVMVTKR-GNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFS 1060 AR MV+K+ GN + T+DDRSGR E+ +F A + Y+ L + D ILI+ G+ ++ + Sbjct: 1018 EARSMVSKKNGNPMIFLTIDDRSGRQEIGVFGKAAEAYKDLCKADNILIIHGKADYNYYK 1077 Query: 1061 GGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEP---HRSGTIPVHL 1117 ++ A + D +AR + + L ++ + D + L+++L P I + L Sbjct: 1078 EEWRINAETIHDYYDARYELLQKLDFTVNAEALADNIWQTLQETLAPLEDTHGARISITL 1137 Query: 1118 YYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSEQVELEF 1159 +A+ RL A +R+ D LL L+ L+ + QV + Sbjct: 1138 QNTSINAQGRLHLPAAYRID-HDNLLR-LQTLLAAPQVRRHY 1177 >UniRef50_C1SP26 DNA polymerase III, alpha subunit n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SP26_9BACT Length = 1188 Score = 1264 bits (3271), Expect = 0.0, Method: Composition-based stats. Identities = 468/1181 (39%), Positives = 718/1181 (60%), Gaps = 46/1181 (3%) Query: 1 MSEPR-FVHLRVHSDYSMIDGLAKTAPLVKKAAALGM-PALAITDFTNLCGLVKFYGAGH 58 M+ + FVHL +H+ YS++DG L++K GM P + I+D + G+V FY Sbjct: 10 MNNSKDFVHLHLHTQYSLLDGAILVGDLMQKIKEKGMTPMVGISDHGTMHGIVDFYRQAR 69 Query: 59 GAGIKPIVGADFNVQCDLL--------GDELTHLTVLAANNTGYQNLTLLISKAYQRGYG 110 IKPI+G + V D + HL + A NN G NL L+S A G+ Sbjct: 70 ANDIKPILGCEVYVAPDSRFNTTYERGQERNHHLVLQAVNNKGLSNLQKLVSLAQFEGFH 129 Query: 111 AAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLE 169 P +D++ + + +EGLI +S G++ R ++R Y + F D +FLE Sbjct: 130 Y-KPRVDKEIMAQYSEGLIAMSACLAGEIPRKIIRDQYDEAVAAAHEYRDIFGKDNFFLE 188 Query: 170 LIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPK 229 + G ++ ++++ G+P+VATND +++ D +HE+ + I T++ P Sbjct: 189 IQENGIEEQLMVNRNIIKMSRDSGIPLVATNDCHYLNKGDHLSHEVLICIQTQSTINSPN 248 Query: 230 RPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-ST 288 R +S Q ++++ EEM F ++P+AL NTVEIA RCN ++ GE LP++ + + Sbjct: 249 RFEIHSDQLWVKTPEEMWAAFGEVPDALTNTVEIANRCNTSITFGELHLPEYEVPEGYTI 308 Query: 289 EDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFI 348 YL A++GL E+LA + + + Y +R++ E VI F GYFLIV +F+ Sbjct: 309 SSYLEHLARKGLHEKLAKIPSE------KHQIYYDRMQKEFDVIIGKNFAGYFLIVWDFM 362 Query: 349 QWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCM 408 +S+ G+PVGPGRGSGAGSLVAY+L ITDLDP+ F+LLFERFLNPER SMPDFD+DFC+ Sbjct: 363 NYSRSVGIPVGPGRGSGAGSLVAYSLGITDLDPIYFNLLFERFLNPERSSMPDFDIDFCV 422 Query: 409 EKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG 468 + R+QVI++V + YG D VSQIITFG + ++ +RDVGRVL P VD+++K IP DPG Sbjct: 423 KGREQVIKYVREKYGDDRVSQIITFGKLLGRSTVRDVGRVLEVPLPIVDKLAKAIPSDPG 482 Query: 469 MTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPL 528 MTL KA + + L ++++A E+ + +++ A KLEG+ RN G HA G+VI+ + ++ PL Sbjct: 483 MTLRKALKKDEDLRKVFQAAEQGELILNHAVKLEGLVRNTGMHAAGIVISDKPLNEYVPL 542 Query: 529 YCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAA 588 + + + QF+K +E GLVKFDFLGL LTII+ A++ I K R ++ LDIA+ Sbjct: 543 CRGQNNE-VIAQFEKDTLESVGLVKFDFLGLNNLTIIDEAIKQIKKNRGED----LDIAS 597 Query: 589 IPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMV 648 IPLD+KK +++L R +TTAVFQLES GMK+L+K+L+P+ FED+IALVAL+RPGP++SGM+ Sbjct: 598 IPLDNKKVYELLSRGDTTAVFQLESSGMKNLLKKLRPEQFEDIIALVALYRPGPMESGML 657 Query: 649 DNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADML 708 D+F+ RK+G EEI Y L+ +L+ T G+++YQEQVMQIAQ++ GY+LG AD L Sbjct: 658 DSFVKRKYGEEEIDY-----IFPDLEEILKETRGVVIYQEQVMQIAQIIGGYSLGSADNL 712 Query: 709 RRAMGKKKPEEMAKQRSVF-------AEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHS 761 RRAMGKKK EM KQ+ F GA+ G + ++A +FD + KFAGYGFNKSHS Sbjct: 713 RRAMGKKKAAEMEKQKQFFLYGDGDTIPGAKARGYDMKMAEDLFDKLAKFAGYGFNKSHS 772 Query: 762 AAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLY 821 AAYAL+SYQT +LKA YP E+MAA+++ ++D +K+V +EC MG+ +LPP+IN Sbjct: 773 AAYALISYQTAYLKALYPVEYMAAILSCEIDKGDKIVTFTEECKNMGIDVLPPNINKSGV 832 Query: 822 HFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEK 881 +F + I +G+GAIK VG IEA ++ R+K G F+ ++D C R D + N+RVLE Sbjct: 833 NFEIEG-TAIHFGLGAIKNVGFNAIEAALQERDKNGEFKNIYDFCERVDLRACNKRVLES 891 Query: 882 LIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADM--FGVLAEEPEQIEQSYA 939 L+ +GAFD G +R + + AL+ + K G + F V E E+ + + Sbjct: 892 LVKAGAFDCSGKNRRQNLQVIERALEEGQRKHKMAEQGIMSIEAFLVDEESDEEEQFFFP 951 Query: 940 SCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGL 999 + PE +L E+E L Y++ HP+ Y ++ + + + ++ + I GL Sbjct: 952 DVEEMPENELLKMEKEVLDFYISNHPLAIYNNILKTF--TIPIGEVANPDSEGDIVIGGL 1009 Query: 1000 VVAARVMVT-KRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDD 1058 V + +VT K+G ++ ++D +EV++F ++Y + LE D+I+I++G++ D Sbjct: 1010 VKHVKRIVTKKKGEKMAFANVEDMDSEVEVVVFPRTFEQYSRHLENDKIIIIAGKI--DH 1067 Query: 1059 FSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLY 1118 + A ++MD+ EA E + I LT + ++LN+L+ +L H G +PV LY Sbjct: 1068 KEDNTVIMADKIMDVTEAMEMLTELVTIKLTSTGMTSEILNKLKTTLATHH-GDVPVKLY 1126 Query: 1119 YQRADA-RARLRFGATWRVSPSDRLLNDLRGLIGSEQVELE 1158 ++ A ++ G + + P N++ L+G ++ E++ Sbjct: 1127 LEKPKAYGVHIKTGPDFGIKPGYDFYNEIDNLLGKDRYEIK 1167 >UniRef50_A0LCM6 DNA polymerase III, alpha subunit n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LCM6_MAGSM Length = 1195 Score = 1262 bits (3266), Expect = 0.0, Method: Composition-based stats. Identities = 543/1193 (45%), Positives = 736/1193 (61%), Gaps = 50/1193 (4%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL +H+ YS++ + +++A +L MPALA+TD NL G ++FY AGIKP+ Sbjct: 5 FVHLHLHTGYSLLTSTVRLKQAIERAQSLQMPALALTDQGNLFGAIQFYSGCLKAGIKPL 64 Query: 66 VGADFNVQCDLLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDR 118 +GA + D E + +L N G++NL LI+K + G P ID Sbjct: 65 LGAQLYLVPDHTNKEERVDKEVRDQVILLCRNEEGWKNLMRLIAKGHLDGSHGL-PRIDL 123 Query: 119 DWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPD-----RYFLELIRT 173 L + + GL+ LS G G VGR L + A + A F D + LEL R Sbjct: 124 PLLKQHSAGLLALSAGAKGAVGRLLAQERPAEAEAAAAELAAIFGDDGQMPNFHLELQRH 183 Query: 174 GRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRN 233 G P EE + V LA+ LP+VA+ D+ ++D D +A + + TL + RPR Sbjct: 184 GEPGEERLIQQTVVLAQKLNLPIVASCDIHYMDPEDANARDALYCVGAVRTLYEENRPRL 243 Query: 234 YSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFP-TGDMSTEDYL 292 S + + EM E FAD+PEAL NT IA RCN+ ++LG LP F + E + Sbjct: 244 -SDRYAFATPAEMAERFADLPEALENTRRIAMRCNLQLKLGTPMLPDFALPPGQTLEGEM 302 Query: 293 VKRAKEGLEERLAFLFPDE---EERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQ 349 +++ GLEERL+ E + R Y +RL EL +INQMGFPGYFLIV +FI+ Sbjct: 303 RTQSEAGLEERLSKYVLPRFPAAEHAELRQRYHDRLTYELGIINQMGFPGYFLIVSDFIK 362 Query: 350 WSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCME 409 W KD+ +PVGPGRGSGAGSLVA++L ITDLDP+ + LLFERFLNPERVSMPDFDVDFCM+ Sbjct: 363 WGKDHHIPVGPGRGSGAGSLVAWSLSITDLDPIRYTLLFERFLNPERVSMPDFDVDFCMD 422 Query: 410 KRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGM 469 +R++VI +V YG D V+QIITFGTM AKAVIRDVGRVL PYG VD+I+KL+P G+ Sbjct: 423 RREEVIGYVQQKYGEDRVAQIITFGTMQAKAVIRDVGRVLEFPYGRVDKIAKLVPNVLGI 482 Query: 470 TLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLY 529 TL +A E EP+L ++ E +EEV LI++A LEG R+ G HA GVVI+ +TD PLY Sbjct: 483 TLKEALEQEPRLRDMMEDEEEVGHLINLALALEGSPRSCGTHAAGVVISNGPLTDTVPLY 542 Query: 530 CDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP-----PL 584 D PVTQF+ DVE AGLVKFDFLGL+TLT+I+ L+++N RRA+ GE P+ Sbjct: 543 RDPRSSMPVTQFNMGDVEKAGLVKFDFLGLKTLTVIDNTLKIVNARRAQEGERAEDRVPI 602 Query: 585 DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644 DIAAI ++D+++F +L T VFQLES GM++++K+L PD FED+IALVAL+RPGPL Sbjct: 603 DIAAIDIEDERAFRLLMDGRTKGVFQLESSGMREILKKLAPDTFEDIIALVALYRPGPLG 662 Query: 645 SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704 SGMVD+FI RKHGR + YP L+P+L TYG+ILYQEQVM+IAQVL+GY+LG Sbjct: 663 SGMVDDFIARKHGRAVVEYPL-----PQLEPILRETYGVILYQEQVMKIAQVLAGYSLGA 717 Query: 705 ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764 AD+LRRAMGKKKPEEMAKQRS+F +GA+ I+ E A IFDL+EKFAGYGFNKSHSAAY Sbjct: 718 ADLLRRAMGKKKPEEMAKQRSIFMDGAKAQQIDPEKAGYIFDLMEKFAGYGFNKSHSAAY 777 Query: 765 ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824 AL+SYQT WLKAHYP FMAA ++AD++NT+KVV V EC M +++LPPD+N F Sbjct: 778 ALISYQTAWLKAHYPVAFMAATLSADINNTDKVVNFVRECHDMSVQVLPPDVNRSAVIFS 837 Query: 825 V----NDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLE 880 V D+ + +G+ AIK VGE P+ A+++AR +GG F L DLC RT+ LNRR LE Sbjct: 838 VQPGAGDEDAVRFGLAAIKNVGEAPMAALVKAREEGGPFASLLDLCQRTEGGNLNRRTLE 897 Query: 881 KLIMSGAFDRLGP-HRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSY- 938 LI +GA D LG +RAAL+++L +AL QH K + +G ++FG E + ++ Sbjct: 898 NLIKAGACDGLGKGNRAALLSALPEALNRGTQHQKDQKLGFMNLFGDEEAENSESTANWK 957 Query: 939 -ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPT--------- 988 WPE+ L+ E+E LG Y++ HP+ +Y E+ Y G + L ++ Sbjct: 958 LPEVPDWPEEERLEREKEALGFYISSHPLRKYEAEMHDY-GLMSLSELREKYGPTSQEPM 1016 Query: 989 -ERGKV-ITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDR 1046 G+V + G+VV ++ TK+G+R+ TL+D G++E ++F DA +++LE++ Sbjct: 1017 GNDGRVSVRFTGVVVERKLHRTKKGDRMLFVTLEDMLGQMEGVVFPDAYVANREVLEEEG 1076 Query: 1047 ILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLE 1106 LI GQ D +K+ + ++ R R L + + + L+ L L+ Sbjct: 1077 PLIFEGQAEVRD--EEVKVAIHSAVTLNNYRRHACRFLRVEVPAGLLRGGGLDELMALLQ 1134 Query: 1107 PHRSGT-IPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSEQVELE 1158 PH L + A AR L V PSD +L+ L G+ Sbjct: 1135 PHIGVDGCRTILVVRMAKARVTLELTLPGLVVPSDGVLDTLIQRFGNGAASFR 1187 >UniRef50_C1F714 DNA polymerase III, alpha subunit n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F714_ACIC5 Length = 1173 Score = 1261 bits (3263), Expect = 0.0, Method: Composition-based stats. Identities = 458/1187 (38%), Positives = 690/1187 (58%), Gaps = 48/1187 (4%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M+E F HL +H+DYS++DG LV A++G ++AITD N+ G V F+ A Sbjct: 1 MAE--FTHLHLHTDYSLLDGACDVEKLVGHVASIGQTSVAITDHGNIYGAVHFFEAAKKK 58 Query: 61 GIKPIVGADFNVQCDLL------GDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGP 114 GIKPI+G + + GD+ HL VLA + GY+NL + S+A G+ P Sbjct: 59 GIKPILGCELYICQKEDHRADPQGDDYNHLLVLAESEEGYRNLVRITSEASLHGF-YRKP 117 Query: 115 IIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRT 173 I + +L E GLI SG G+ ++L+ N A Y++ F +FLE+ Sbjct: 118 RISKKYLAEHAAGLIGFSGCLAGEFCQNLMADNYQAARATAAQYQDIFGRGNFFLEIQDQ 177 Query: 174 GRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRN 233 G E+ L + +P+VATND ++ D AH++ + + ++ DPKR + Sbjct: 178 GLELEKKIHADMFRLEKDLDIPLVATNDSHYLCEDDHHAHDVLLCVQTAGSIHDPKRFKF 237 Query: 234 YSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMST-EDYL 292 S Q Y++S EM LF PE ++ T++ A+RCN+ + + P+F T + Y Sbjct: 238 DSDQFYVKSAAEMERLFPHAPEVVSRTMQFAERCNLKLNKVDNPFPEFAVPPGHTIDSYF 297 Query: 293 VKRAKEGLEERLAFLFPDEEERLKRRP---EYDERLETELQVINQMGFPGYFLIVMEFIQ 349 +EG ++RL ++R R +Y+ RLE E+ +I QM F GYFLIV +FI+ Sbjct: 298 EHVCREGFKKRLDTAIRHLQDRGILRSPISDYEARLEREIGIIKQMKFSGYFLIVWDFIR 357 Query: 350 WSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCME 409 ++KD+ +PVGPGRGS AGSLV Y ++ITD+DPL+ LLFERFLNPERVSMPD D+DFCM Sbjct: 358 YAKDHDIPVGPGRGSAAGSLVGYVMEITDIDPLQNVLLFERFLNPERVSMPDIDIDFCMN 417 Query: 410 KRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGM 469 +R +VIE+V YGR+ V+QIITF TMAAKA I+DVGR L PYG VDRI+K+IP G+ Sbjct: 418 RRGEVIEYVTRKYGREQVAQIITFNTMAAKAAIKDVGRALDMPYGDVDRIAKMIPATIGV 477 Query: 470 TLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLY 529 T+ +A PQL E YE + +++ LID A++LEG+ R AG HA GVVIAP +TD PL Sbjct: 478 TIDQALTDSPQLQEAYEGNTQIRELIDTAKRLEGLVRGAGVHAAGVVIAPRPLTDLVPLS 537 Query: 530 CDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAI 589 + VT +D VE GL+K DFLGL TLT+I+ L+MI K R + +D+A + Sbjct: 538 RS-KNDEIVTAYDMKAVEKMGLLKMDFLGLTTLTVIDDCLKMIRKNRGET----VDMAKV 592 Query: 590 PLDDKKSFD-MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMV 648 PLDD+++++ + R+ T+ VFQ ES GM+D+++R +P C ED+ AL AL+RPGP+Q GM+ Sbjct: 593 PLDDQETYERVFHRALTSGVFQFESGGMRDVLRRYKPTCVEDLTALNALYRPGPIQGGMI 652 Query: 649 DNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADML 708 D+FI+RK GR ++ Y + L+ +L+ T G+I+YQEQVMQIA VL+GY+LG AD+L Sbjct: 653 DDFIERKWGRRKVEY-----ELPPLETILKETLGVIVYQEQVMQIANVLAGYSLGEADLL 707 Query: 709 RRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVS 768 RRAMGKK PEEMAKQR F GA + + +KIFDL+E+FAGYGFNKSHSAAYAL++ Sbjct: 708 RRAMGKKNPEEMAKQRDRFVSGALEREFPKDKIVKIFDLMEQFAGYGFNKSHSAAYALLA 767 Query: 769 YQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDD 828 Y T WLK HYP EFMAA++T+++ E VV + EC + + + PPD+ F + Sbjct: 768 YHTAWLKTHYPVEFMAALLTSEISKPENVVKYIQECREIEIPVEPPDVLFSDADFTPHGK 827 Query: 829 GEIVYGIGAIKGVGEGPIEAIIEAR----NKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884 I +G+ AIK VG I++I++AR +G F+ ++ C + D + +N+RV+E LI Sbjct: 828 -SIRFGLTAIKNVGRNAIDSILDARGKLAAEGKSFQNFWEFCEKVDLRLMNKRVIESLIK 886 Query: 885 SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVL---AEEPEQIEQSYASC 941 +GA D G RA LM S+ A++ A + + EA GQ+ +FG+ A + Sbjct: 887 AGALDSFG-RRAQLMASVDKAIERAQKAQRDEAAGQSGLFGLFDADAPASASPADDLPNV 945 Query: 942 QPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTE-----------R 990 W E + L E+E LG +++GHP+++Y +++ G + + Sbjct: 946 PDWEEALRLQSEKEVLGFFVSGHPLDRYAEKLRNLPGIIDTATALEMKPAPPTGRRGQSN 1005 Query: 991 GKVITAAGLVVAARVMVTKR-GNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILI 1049 I AG++V +V +KR G+ +L+D +G+++++ F ++ L+ + ++ Sbjct: 1006 ENEIAIAGMIVGLKVAKSKRSGDLYAQASLEDATGKIDLICFPRDYERLADSLKMEAPVV 1065 Query: 1050 VSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHR 1109 V G + ++ K+ + +D+ + K + I + +I + L L Q + Sbjct: 1066 VRGALRAEE-EAAPKLAISSIQALDDVKVKLPSNVRIRVQLDRISESTLEELHQLISA-V 1123 Query: 1110 SGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSEQVE 1156 G + L ++ + + V+ ++ L+G V+ Sbjct: 1124 PGPGKMMLNLEKKGEYCVVMEPEGFTVAADRAFIDQAELLLGRGSVQ 1170 >UniRef50_UPI00017463A7 DNA polymerase III, alpha subunit n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017463A7 Length = 1155 Score = 1257 bits (3252), Expect = 0.0, Method: Composition-based stats. Identities = 475/1175 (40%), Positives = 693/1175 (58%), Gaps = 52/1175 (4%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS FVHL +H++YSM+DG + L+KKA +LGMPA+A+TD NL G ++FY + A Sbjct: 1 MSAS-FVHLHLHTEYSMLDGAVRIPDLMKKAKSLGMPAVAMTDHGNLFGAIEFYQEANKA 59 Query: 61 GIKPIVGADFNVQCDLLGDEL--------THLTVLAANNTGYQNLTLLISKAYQRGYGAA 112 GIKPI+G + + + ++ +HLT+LAANN GY NL L++ A+ G Sbjct: 60 GIKPIIGCEIYLAPGSMWEKKDVTGRKRSSHLTLLAANNEGYANLVKLVTLAHLDGM-YH 118 Query: 113 GPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELI 171 P +D++ L + +EGLI LSG G++ +L + V + + F D ++LEL Sbjct: 119 KPRVDKEALKKHSEGLICLSGCISGEINEFILTDREDEARKTVQEFIDIFGKDNFYLELH 178 Query: 172 RTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRP 231 G ++ + E + GL +VA NDV F++ D +AH++ + I + D KR Sbjct: 179 NHGMAQQQRCMLKLREFSREFGLKMVAANDVHFLNKEDHEAHDVMICIGTAANVHDEKR- 237 Query: 232 RNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEY---FLPQFPTGDMST 288 +YSP+ Y ++ E+M ELF D EA T+EIA++CN+ ++L PQFP + T Sbjct: 238 LHYSPEVYFKTAEQMRELFEDFEEACDTTLEIAEKCNIKLKLDASSIEKYPQFPPPEGQT 297 Query: 289 ED-YLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347 + Y + ++G+ R +ER ERL+ EL +IN+M F YFLIV +F Sbjct: 298 REGYFRQLCEDGMIFRYG------KERAMNDAMLRERLDYELGIINKMNFTSYFLIVWDF 351 Query: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 I+W++D+G+PVGPGRGS AGSLVAY+L ITDL P+ F L+FERFLNPERVS PD D+DFC Sbjct: 352 IKWARDHGIPVGPGRGSAAGSLVAYSLGITDLCPIRFGLIFERFLNPERVSPPDVDIDFC 411 Query: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467 +R +VIE+V YG +VS IITFGTM AK+V+RDVGRVLG YG DR+SK+IP + Sbjct: 412 QTRRPEVIEYVRQHYGERSVSHIITFGTMGAKSVVRDVGRVLGWSYGDADRLSKMIPTEL 471 Query: 468 GMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAP 527 + L A E P+L E + + L A LEG+TRNAG HA G+VI + +F P Sbjct: 472 NIDLESAVEKNPELKAALENESSTQQLWQYATFLEGMTRNAGIHAAGIVIGDQPLDNFIP 531 Query: 528 LYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIA 587 L EG+ V QF + G++K DFLGL+TLT+I A++ + R P ++ Sbjct: 532 LTRGSEGE-VVAQFAMGPLTDVGMLKMDFLGLKTLTVIKDAVDFVRLRF-----PDFNLD 585 Query: 588 AIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGM 647 A+PLDDK +++ML++ ET AVFQ+ES GM ++L+PD E++IAL+AL+RPGP+ + Sbjct: 586 AVPLDDKTTYEMLRKGETIAVFQMESGGMALTCRQLEPDKIEEIIALLALYRPGPMD--L 643 Query: 648 VDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADM 707 + +FI RK G + + Y H L+ V + TYGI++YQEQV + A +L+GY+LG AD+ Sbjct: 644 IPDFIKRKKGEQRVEY-----LHPLLEDVSKETYGILIYQEQVQKAANLLAGYSLGAADL 698 Query: 708 LRRAMGKKKPEEMAKQRSVFAEGA-EKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 LRRAMGKKKPEEM KQR++F +G E N I A+ A IFDL+EKFAGYGFNKSHSAAY + Sbjct: 699 LRRAMGKKKPEEMEKQRTIFVKGCGETNQIPAKKANDIFDLLEKFAGYGFNKSHSAAYGI 758 Query: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 V+Y+T +LKA+YP EFMAAV++ ++++T+K+ G V EC RMG+ ILPPD+N F Sbjct: 759 VTYRTAYLKANYPVEFMAAVLSYEVNSTDKLAGFVSECQRMGITILPPDVNKSSLKFAPE 818 Query: 827 ------DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLE 880 I YG+ A+K VGE + A I R K G F L D CAR D++ +N+R++E Sbjct: 819 CIEGSDVPNAIRYGLAAVKNVGEAAMAAAIAERTKNGPFTSLEDFCARVDSRMINKRLME 878 Query: 881 KLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVL-AEEPEQIEQSYA 939 LI G FD G RA + L + L A K G +F + A Sbjct: 879 PLIKVGGFDWTGQDRAGMCFVLDEVLSNASSRQKERKAGMVSLFDDDTMGATKNTLAKSA 938 Query: 940 SCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKV-ITAAG 998 PW ++ ++ E+E LG +++GHP++ Y E R+ D+ + +V + AG Sbjct: 939 GPPPWKKEELMAFEKELLGFFVSGHPLDNYRHIYESKY-ITRIADVQEVKEERVSLRVAG 997 Query: 999 LVVAARVMVTKRGNR-IGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFD 1057 L+ V TK+ NR L+D SG +EV+ +++ +K++ LL + ++ + G+ D Sbjct: 998 LIQRLEVKYTKKDNRAFATFALEDFSGTVEVISWSEGYEKFKDLLVEGGVIGMKGRCEKD 1057 Query: 1058 DFSGGLKMTAREVMDIDEAREK----YARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTI 1113 S ++MT +EV + + + + LA+ + + + L+ + + L H G Sbjct: 1058 SRSETIRMTVQEVKPLKPVKPEKPNGKPKPLALYMDVLKHGPKDLDAIHKILTDH-PGET 1116 Query: 1114 PVHLYYQRADA-RARLRFGATWRVSPSDRLLNDLR 1147 PV L A A LR G + V + +L L+ Sbjct: 1117 PVQLRIMTASGEEAVLRVGRSLNVEVNAQLQQALQ 1151 >UniRef50_D1B9W1 DNA polymerase III, alpha subunit n=3 Tax=Synergistaceae RepID=D1B9W1_THEAS Length = 1132 Score = 1256 bits (3251), Expect = 0.0, Method: Composition-based stats. Identities = 474/1170 (40%), Positives = 684/1170 (58%), Gaps = 49/1170 (4%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS FVHL VHS+YS++DG + LV A++GM A+AITD + G +FY Sbjct: 1 MS-VEFVHLHVHSEYSLLDGAIRCGELVDTVASMGMGAVAITDHGVMYGCEEFYEKCVAK 59 Query: 61 GIKPIVGADFNVQCDLLGDE-----LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPI 115 GIKPI+G + V + + HL + A + GY+NL L+S A G+ P Sbjct: 60 GIKPIIGCEVYVDPNGMDSRDGKGRNNHLVLWAEDQVGYKNLIKLVSIANTDGF-YYKPR 118 Query: 116 IDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPD-RYFLELIRTG 174 +D L + ++G+I S G++ + L+ G+ Y + F + +F+E++ Sbjct: 119 VDHRVLSQHSKGIIASSACLAGEIPQLLMDGDFDGAVSRANLYRDIFGEGNFFIEIMYNQ 178 Query: 175 RPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNY 234 P++ + LA+ LP++ATND ++ D H++ + + T+D P R R Sbjct: 179 LPEQAMANAELIRLAKRCSLPLIATNDAHYLRREDASWHDVLLCVQTNSTVDTPDRYRFG 238 Query: 235 SPQQYMRSEEEMCELFA-DIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMST-EDYL 292 S Y+R+ EEM L ++PEAL NT+ +A+RCNV ++LG Y LP+FP + T + +L Sbjct: 239 SDDFYLRTPEEMWSLLGGEVPEALRNTLLVAERCNVELQLGHYMLPEFPLPEGETLDSHL 298 Query: 293 VKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSK 352 K A+EGL R+ P EY +RLE EL VI QMGFPGYF IV + I +K Sbjct: 299 EKMAREGLRARVGEPIPQ---------EYRDRLEYELGVIKQMGFPGYFCIVADIITAAK 349 Query: 353 DNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRD 412 G+P+GPGRGS AGSLVA+ L IT+LDP+++ LLFERFLNPER+SMPD D D ++RD Sbjct: 350 SRGIPIGPGRGSAAGSLVAWCLGITELDPIKYKLLFERFLNPERISMPDIDTDVSDKRRD 409 Query: 413 QVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA 472 +V+ ++ + YG D VSQIITF M +KA IRDVGR L PY VDR++KL+P D +L Sbjct: 410 EVLAYIVEKYGIDRVSQIITFDRMKSKAAIRDVGRALAMPYPEVDRVAKLVP-DGVKSLK 468 Query: 473 KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDE 532 +A E P L E++ +D +V+ L+D A +EG+ R+ +HA GVVI P + + P+ Sbjct: 469 EALEKSPDLKEVHSSDPKVRRLVDTASHIEGIARHCSQHAAGVVITPVPLVEMVPVRKIG 528 Query: 533 EGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLD 592 E VTQ+ +E+ GLVK DFLGLRTL++I AL + R +D+ AIPLD Sbjct: 529 E-NQVVTQYSMEPLEHLGLVKMDFLGLRTLSVIEGALRNVEANRGL----KIDLRAIPLD 583 Query: 593 DKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFI 652 D K+FDMLQR++T VFQLES GM+DL++RL+PDCFED+IA++AL+RPGPL SGMVD++I Sbjct: 584 DPKTFDMLQRADTLGVFQLESSGMQDLLRRLRPDCFEDLIAVLALYRPGPLGSGMVDDYI 643 Query: 653 DRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAM 712 +RKHGR ++YP H L+ L+ TYG+ILYQEQVMQ A L+GYTLG AD+LRRAM Sbjct: 644 ERKHGRSPVTYP-----HPCLEEALKETYGVILYQEQVMQCAAELAGYTLGEADLLRRAM 698 Query: 713 GKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTL 772 GKKK + M KQRS F EGA+ G+ ++A IF+ +EKFA YGFNKSHSAAYAL+SYQT Sbjct: 699 GKKKADVMEKQRSKFVEGAKARGVEPKMAEDIFNSIEKFAEYGFNKSHSAAYALISYQTA 758 Query: 773 WLKAHYPAEFMAAVMTADMDNT-EKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEI 831 +LKAHY EF+A+ +++ + + + + + E +G +LPPDIN F + I Sbjct: 759 YLKAHYGPEFLASYLSSIVGSRMDILGRYIKEVRNLGYSVLPPDINESQSDFVAVGE-VI 817 Query: 832 VYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRL 891 G+ A+ VG+ ++AI+ AR++ G FR +D R D + +NR V+E LI +GAFD L Sbjct: 818 RLGLSAVAKVGDSAVDAILRARSE-GPFRSFWDFLCRVDLRTVNRGVIENLIKAGAFDVL 876 Query: 892 GPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLD 951 P+R L+++L L+ A + + Q +F +E E+ E L+ Sbjct: 877 CPNRRMLLDNLEGLLEMAQRR--CDPSKQVSLFD--GDEEEEEEPKMDVVDDVDIHQRLE 932 Query: 952 GERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVI-TAAGLVVAARVMVTKR 1010 ERE LGLY++GHP Q E+ ++ ++ D+ V AGL+ R TKR Sbjct: 933 WEREVLGLYISGHPFEQVEGELAPFL-VCKISDLRSWRSSNVAPVTAGLLAGIRERYTKR 991 Query: 1011 GNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREV 1070 G+ +GI ++D ++E + F K + +L I + SG V D G L + E+ Sbjct: 992 GDPMGILEMEDGDDKVEAVCFPKVWQKVKPMLRTGGIYVFSGMVKDD---GRLSVLIDEI 1048 Query: 1071 MDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRF 1130 M+ E + + + ++ L L + L+ H SG P+ +Y + L Sbjct: 1049 MEAREWIREKVPVAKLRVLSKR--AGLFRDLARELKGH-SGPSPLLIYVEEGGIITALW- 1104 Query: 1131 GATWRVSPSDRLLNDLRG-LIGSEQVELEF 1159 + +V D L L +G QV L+F Sbjct: 1105 SRSIKVRVDDSLRRSLEDAFLG--QVALDF 1132 >UniRef50_B9XPL1 DNA polymerase III, alpha subunit n=1 Tax=bacterium Ellin514 RepID=B9XPL1_9BACT Length = 1224 Score = 1255 bits (3249), Expect = 0.0, Method: Composition-based stats. Identities = 470/1220 (38%), Positives = 686/1220 (56%), Gaps = 78/1220 (6%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS FVHL +H++YS++DG + L+ KA L P+LAITD L G + FY A Sbjct: 1 MSHADFVHLHLHTEYSLLDGACRLDRLMDKAHELKFPSLAITDHGVLFGAIDFYKAARDK 60 Query: 61 GIKPIVGADFNVQCDLLGDELT---------HLTVLAANNTGYQNLTLLISKAYQRGYGA 111 GIKPI+G + V ++ + HL +LA + GY+NL L++ A+ GY Sbjct: 61 GIKPIIGCEVYVAPHSRTEKKSANGGRDVYNHLVLLAKDEIGYKNLIKLVTAAHLEGY-Y 119 Query: 112 AGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLEL 170 P ID++ L EGLI LSG ++ ++++ N + + ++++ + ++LEL Sbjct: 120 YKPRIDKEILAANKEGLIALSGCLASEIPEAIMKDNLQKARDGIDWFKQTLGAENFYLEL 179 Query: 171 IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230 G P++ + A+ GL +VA+NDV +I+ AH+ + I L D KR Sbjct: 180 QNHGIPEQAKVNKHLIPWAKEFGLKLVASNDVHYIEKGHSHAHDCLICIGTQTQLADTKR 239 Query: 231 PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTED 290 + Q Y+RS EEM FA+IPEA+ NT+E+A++CN+ V G+ P F + T + Sbjct: 240 MKYVEEQFYLRSAEEMKARFAEIPEAVQNTLEVAEKCNLEVEFGKLHYPVFDPPEAYTRE 299 Query: 291 -YLVKRAKEGLEERL--------AFLFPDEEERLKRRPEYD------------------- 322 YL K EGL R + + +R P Y Sbjct: 300 GYLRKLLAEGLHRRYTMHVRAEGQEFIVEGIDDARRLPTYKVQSPDAKVQGNGNGHHVDE 359 Query: 323 ------------------ERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGS 364 +RL+ EL+VI + GF YFLIV +F+++ ++ G+ RGS Sbjct: 360 PITNLEDPAVKEAVKAVIDRLQMELKVIEKTGFISYFLIVGDFVRYGREQGIS-CVARGS 418 Query: 365 GAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGR 424 AGSLV Y L+I ++DP+ + LLFERFLNPERV+ PD D+DF ++R VIE+V YG Sbjct: 419 AAGSLVTYLLEIANVDPIRYALLFERFLNPERVNPPDIDIDFADDRRADVIEYVRKKYGN 478 Query: 425 DAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEI 484 +V+QI+TFGTM AK+V+RDVGRV+G YG DR++K+IP + M L KA + P L Sbjct: 479 SSVAQIVTFGTMGAKSVLRDVGRVMGLGYGDCDRLAKMIPNELKMDLHKALKQSPDLKAA 538 Query: 485 YEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKS 544 Y+ +E + LID A LE +TRN+ HA GVVI + + PL DEEG VTQ+ + Sbjct: 539 YDTEEVTRELIDTAFALEDITRNSSVHAAGVVIGDQPLVNLLPLKQDEEG-TLVTQYAMN 597 Query: 545 DVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSE 604 V GL+K DFLGL+TLT+I EMI + + I +PLDDKK++D+L + Sbjct: 598 PVGELGLLKMDFLGLKTLTVIRNTCEMIKATKGVDVP----IDNLPLDDKKTYDLLNNAR 653 Query: 605 TTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYP 664 T VFQLES GM+DL ++ Q E + ALVAL+RPGP+ ++ FI R+HG +I Y Sbjct: 654 TLGVFQLESGGMRDLCRKFQIGSVEHITALVALYRPGPMD--LIPEFIKRRHGEVKIEY- 710 Query: 665 DVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQR 724 +H L+ + TYGI++YQEQVMQ AQ L+GYTLGGAD+LRRAMGKKK EEM KQR Sbjct: 711 ----EHPLLEKICSETYGIMVYQEQVMQAAQYLAGYTLGGADLLRRAMGKKKVEEMQKQR 766 Query: 725 SVFAEGAEK-NGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFM 783 F +GA N I A A +IFDL+EKFAGYGFNKSH+AAYA+V+YQT +LKA+YP EF+ Sbjct: 767 ETFVKGAASINKIPAAKANQIFDLLEKFAGYGFNKSHAAAYAIVAYQTAYLKANYPVEFL 826 Query: 784 AAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGE-IVYGIGAIKGVG 842 +A+MT DM +T K+ + E MG+++LPPD+N F +GE I +G+ AIKGVG Sbjct: 827 SAMMTNDMADTSKLTEFIAEARSMGIEVLPPDVNESQVAFAPARNGEVIRFGLAAIKGVG 886 Query: 843 EGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSL 902 E +++I++AR GG F L D+C R D + +NR+VLE LI SGA D R+ + + Sbjct: 887 EIAVQSILDARKAGGEFTSLGDMCQRVDIRTVNRKVLEALIKSGACDAFKETRSTMYAHI 946 Query: 903 GDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLT 962 AL A + GQ+ MF +L E E + A WPE +L E+E LG Y+T Sbjct: 947 DKALTRAAGIIQDRQRGQSSMFDMLEENREDKPEVVAKLPEWPEHELLQAEKELLGFYVT 1006 Query: 963 GHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKR-GNRIGICTLDD 1021 GHPIN Y+ +E+Y ++ ++ E + GLV + V+K+ + TL+D Sbjct: 1007 GHPINPYVPLLEKYA-LTKIAELPKLENRALTRIGGLVSVVQQGVSKKSNKPYAMVTLED 1065 Query: 1022 RSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYA 1081 G ++++ + DKY+ L + L+V G+VS + K+ +E+M +++A KY Sbjct: 1066 LDGTVQLLCMNENYDKYRHLFVVNNALLVIGEVSAGE--DKPKIFPQEIMLLEDAPRKYT 1123 Query: 1082 RGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADAR-ARLRFGATWRVSPSD 1140 + + L +D+ + L + H G P+ L +++A + + V+PS Sbjct: 1124 KQVFFRLDAAHLDENKIQSLFELATAH-PGRCPLFLRFRQATGEYVYIETHEKYSVTPSL 1182 Query: 1141 RLLNDLRGLIGSEQVELEFD 1160 +L G + ++ D Sbjct: 1183 KLEKAAAEQFGDQTYFVKVD 1202 >UniRef50_Q9JVX8 DNA polymerase III subunit alpha n=201 Tax=cellular organisms RepID=DPO3A_NEIMA Length = 1144 Score = 1255 bits (3249), Expect = 0.0, Method: Composition-based stats. Identities = 557/1167 (47%), Positives = 749/1167 (64%), Gaps = 31/1167 (2%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M+EP ++ LR+H+++S+ DG+ + L+ KA G+PAL I+D N GLVKFY A A Sbjct: 1 MTEPTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSA 60 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQ-RGYGAAGPIIDRD 119 GIKPI AD + D+ ++ N+ GY L+ L++ AY + ++ + Sbjct: 61 GIKPIGAADVRIGNPDAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKDRNVHHAELNPE 120 Query: 120 WLIE-LNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTG-RPD 177 WL N GLI LSG G+VG +LL GN Y FPD ++LEL R RP+ Sbjct: 121 WLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQRLPERPE 180 Query: 178 EESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQ 237 E+ + +V+LAE GLPVVAT+ +F+ DF+AHE RV I G+ L D KRPR+++P Sbjct: 181 WEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKRPRDFTPS 240 Query: 238 QYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKRA 296 Q+ E M E F+D+PEAL NTVEIAKRCN+ + LG+ FLP FPT D S +DYLVK + Sbjct: 241 QFFIPPETMAERFSDLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLDDYLVKLS 300 Query: 297 KEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGV 356 EGL+ER+ L+PDE ER + PEY ERL+ EL +I QM FPGYFLIV +FI W+K +G Sbjct: 301 NEGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGC 360 Query: 357 PVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIE 416 PVGPGRGSGAGSLVAY+LKITDLDPL++ LLFERFLNPERVSMPDFDVDFC R +VIE Sbjct: 361 PVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQANRGRVIE 420 Query: 417 HVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGM--TLAKA 474 +V + YG +AVSQI+TFGTM++KAVIRDVGRVL P+ D++SKLIP + L A Sbjct: 421 YVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSKLIPLEANKPLGLDDA 480 Query: 475 FEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEG 534 +AEPQ+ E+ EA EE LI +A+KLE +TR G HAGGV+IAP KI+D++P+Y +E Sbjct: 481 MKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADES 539 Query: 535 KHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDK 594 PV+ +DK DVE GLVKFDFLGLR LTII A I +D+ IPLDD+ Sbjct: 540 ASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTG----DIVDVGTIPLDDQ 595 Query: 595 KSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDR 654 ++ + + + TTAVFQ ES GMK ++K FE++IA V+L+RPGP+ + + +F+ R Sbjct: 596 TAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDN--IPDFVAR 653 Query: 655 KHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK 714 G+E Q+ H L+ +L PTYGI++YQEQVMQ AQ++ GY+LGGAD+LRRAMGK Sbjct: 654 MKGQE------FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGK 707 Query: 715 KKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWL 774 KKPEEM K R +FAEGA K GI+ E + +IF+ +EKFAGYGFNKSH+AAYAL+SYQT WL Sbjct: 708 KKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWL 767 Query: 775 KAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYG 834 KAHYPAEFMAA M++++DNT+++ D+C G++ LPPDIN Y F D +I Y Sbjct: 768 KAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMKIRYA 827 Query: 835 IGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPH 894 +GAIKG GE +E+I AR GG F L D C R + +NRR LE LI GAFD + P+ Sbjct: 828 LGAIKGTGEAAVESITSARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPN 887 Query: 895 RAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGER 954 RA L+ ++ A+ ADQ A Q +F ++ + E + W E L E+ Sbjct: 888 RAMLLANIDLAMNNADQKA--ANANQGGLFDMMEDAIEPVR--LIDAPMWSESEKLAEEK 943 Query: 955 ETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRI 1014 +G YL+GHP Y +E+ R + +L + P + + AG V A R M+ KRG I Sbjct: 944 TVIGFYLSGHPFGPYAQEV-RQIAPQKLSKLKPQD---SVRLAGFVTAVRTMMGKRGK-I 998 Query: 1015 GICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSG--GLKMTAREVMD 1072 +L+D SG++E+M+ L+ L+ D++LI+ +VS DD+ G GL++ A +VM Sbjct: 999 AFVSLEDLSGQVEIMVGGQTLENCADCLKADQVLIIESKVSRDDYGGGDGLRILANQVMT 1058 Query: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGA 1132 + ARE+YAR L+++L +L+ L P IP+ L Y A RL+ Sbjct: 1059 LQTARERYARSLSLALAPHHDIGELVQLLAAHQLPDTP-RIPLQLSYANEKASGRLQVPP 1117 Query: 1133 TWRVSPSDRLLNDLRGLIGSEQVELEF 1159 W V+PS L +L L+GS V + + Sbjct: 1118 KWTVTPSSALFGELETLLGSRSVRVNW 1144 >UniRef50_B2TQR7 DNA polymerase III subunit alpha n=23 Tax=Clostridia RepID=B2TQR7_CLOBB Length = 1203 Score = 1254 bits (3245), Expect = 0.0, Method: Composition-based stats. Identities = 442/1208 (36%), Positives = 680/1208 (56%), Gaps = 77/1208 (6%) Query: 3 EPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGI 62 + FVHL +H+ YS++DG K ++ K LGM ++AITD L GLV FY A GI Sbjct: 17 KRDFVHLHLHTGYSLLDGSGKIKEIMAKTKELGMNSIAITDHGVLYGLVDFYKAALEYGI 76 Query: 63 KPIVGADFNV-------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPI 115 KPI+G + V + + HL +L N GY+NL ++S A G+ P Sbjct: 77 KPILGCEVYVAGKSMKIKQPDKDNSTYHLVLLVKNEIGYRNLMKIVSTASIEGF-YYKPR 135 Query: 116 IDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGR 175 +D ++L +EGLI LS G+V L+GN E Y+E F + ++LE+ G Sbjct: 136 VDHEYLKAHSEGLIALSACLGGEVQSYELKGNYEKAKETAILYKEIFKEDFYLEIQNHGM 195 Query: 176 PDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYS 235 ++ ++L++ G+P+VATNDV +I + +H+I + I G T+DD R R S Sbjct: 196 DEQRKVNEENIKLSKELGIPLVATNDVHYIKKDGYKSHDILMCIQTGKTVDDVNRRRYPS 255 Query: 236 PQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTG-DMSTEDYLVK 294 Q Y++S EEM E+F+ IPEAL NTV+I+K+CN + E LP+FP +YL Sbjct: 256 DQFYLKSPEEMWEMFSYIPEALENTVKISKQCNYEYKFHESKLPKFPLPQGEEPYNYLKN 315 Query: 295 RAKEGLEERLAF------------LFPDEEERLKRRPEYDERLETELQVINQMGFPGYFL 342 GL ER D + + +RLE ELQ+I QMG+ YFL Sbjct: 316 TCYMGLIERYEEFKELRDKDLDYDELDDLKSKNDSAKNLIDRLEYELQIIRQMGYIDYFL 375 Query: 343 IVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDF 402 IV +FI+++ DNG+P GPGRGS AGS++AY L IT +DP+++ L+FERFLNPERVSMPD Sbjct: 376 IVWDFIKFANDNGIPTGPGRGSAAGSIIAYTLGITKIDPIKYSLIFERFLNPERVSMPDI 435 Query: 403 DVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL 462 D DFC E+R +VI++V + YG D VSQIITFGTMAA+A IRDVGR + + Y VD+I K+ Sbjct: 436 DSDFCYERRQEVIDYVVEKYGEDNVSQIITFGTMAARACIRDVGRAMNYSYSEVDKICKM 495 Query: 463 IPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 IP G+T+ KA + P+L EIY+ DE VK+LIDM++ LEG+ R++ HA GVVIA T + Sbjct: 496 IPTMLGITIEKALDFNPELKEIYDKDERVKSLIDMSKDLEGLPRHSSTHAAGVVIASTPL 555 Query: 523 TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP 582 + PL ++E VTQF + +E GL+K DFLGLRTLT++N AL++I + R Sbjct: 556 VQYVPLQKNDE--MIVTQFGMTTLEELGLLKMDFLGLRTLTVMNEALKIIKENR----NI 609 Query: 583 PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 +D+ I +DK+ + M+ +T VFQLES GM +K L+PD ED+IA ++L+RPGP Sbjct: 610 DIDLDKIDFEDKEVYKMIGEGKTAGVFQLESPGMVSFMKELKPDSLEDIIAGISLYRPGP 669 Query: 643 LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 + + +I+ K E++ Y L+ +L+ TYG+++YQEQVM+I + L+GY++ Sbjct: 670 MAE--IPRYIECKRNPEKVKYDA-----PELEEILDVTYGVMVYQEQVMEIVRKLAGYSM 722 Query: 703 GGADMLRRAMGKKKPEEMAKQRSVFAE-----------GAEKNGINAELAMKIFDLVEKF 751 G +DM+RRAM KKK + M ++R F G +NGI+ E A KIFD + F Sbjct: 723 GRSDMVRRAMSKKKHKVMEEERKNFIHGIIENDEVVVPGCIRNGISEEAANKIFDNMMDF 782 Query: 752 AGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKI 811 A Y FNKSH+AAYA+V YQT +L +YP E +AA++ + M ++EKVV + + +G+++ Sbjct: 783 ASYAFNKSHAAAYAVVGYQTAYLMKYYPVEMIAAMLNSFMGSSEKVVYYISKAEELGIQV 842 Query: 812 LPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDT 871 LPPDIN F V + I +G+ AIK VG I ++++ R G F LFD ++ D Sbjct: 843 LPPDINESFAKFAVKGE-TIRFGLAAIKNVGMNLINSVVKTRENKGKFDSLFDFISKIDL 901 Query: 872 KKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEP 931 +N+R +E LI SG FD +R+ L+ + + K GQ +F +++ Sbjct: 902 SAINKRTIESLIKSGTFDSFKIYRSKLLAVYEKMVDSISSDRKRNIDGQISLFA--SDDI 959 Query: 932 EQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGG------------ 979 E Y + + ++ +L E+E GLY++GHP++ Y + ++ Sbjct: 960 YVPEIEYPNINEFDKRSLLTMEKEMTGLYISGHPLDDYAQSLKFQTSNEIGKIFSHHELL 1019 Query: 980 ------VRLKDMHPTERG----KVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVM 1029 L D+ E G + G++ VT+ + L+D +G +EV+ Sbjct: 1020 DDTLEIQMLDDVINNESGINDNDRVILGGILTQVNKKVTRNNTIMAFLQLEDLTGTIEVI 1079 Query: 1030 LFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLT 1089 +F LD+ ++L +D ++I+ G++S K+ + +++ + + + + Sbjct: 1080 VFPKVLDRVRELCNEDDLVIIKGRISL-KTDELPKLICESIEPLEKIN---SSKIYLRVQ 1135 Query: 1090 DRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGL 1149 + +L L++ ++ ++ G P++++ D R + R + ++ L LR Sbjct: 1136 NTIKAKELSLNLKELIKDYK-GDTPIYIF--ATDQRQQFRVPRDRWLDINEESLGVLRKF 1192 Query: 1150 IGSEQVEL 1157 IG E V++ Sbjct: 1193 IGEENVKV 1200 >UniRef50_A0PYC7 DNA polimerase III, alpha chain n=22 Tax=Bacteria RepID=A0PYC7_CLONN Length = 1167 Score = 1252 bits (3240), Expect = 0.0, Method: Composition-based stats. Identities = 434/1198 (36%), Positives = 675/1198 (56%), Gaps = 73/1198 (6%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M +FVHL H++YS++DG K L+++A LGM +LAITD + G V FY A Sbjct: 1 MKGQKFVHLHTHTEYSLLDGSGKIGGLIERAKELGMDSLAITDHGTMFGCVDFYKKAKEA 60 Query: 61 GIKPIVGADFNVQCDLLG-------DELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 GIKPI+G++ V + ++ HL +L N GY+NL ++SKA G+ Sbjct: 61 GIKPIIGSEIYVASKSMNIKRNDRENKNHHLVLLVKNEIGYKNLMKIVSKAAIDGF-YYK 119 Query: 114 PIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRT 173 P +D ++L E +EGLI LS G+V +LL G E FY++ F D ++LEL Sbjct: 120 PRVDHEYLREHSEGLIALSACLAGEVSYNLLNGTKEKAREVALFYKDIFKDGFYLELQYH 179 Query: 174 GRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRN 233 G + +EL+ +P+VATNDV +I D +H++ + I G TLDD R R Sbjct: 180 GIDKQLRVNEMLIELSRELDIPLVATNDVHYIKKEDAKSHDVLLCIQTGKTLDDTDRMRY 239 Query: 234 YSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTE-DYL 292 Y++S EEM + F+ +PEAL NTV+IA+ CN E LP FP + +Y+ Sbjct: 240 EPQNFYLKSPEEMYDTFSYVPEALENTVKIAEECNFDYVFHESKLPNFPLPESKDHFEYM 299 Query: 293 VKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSK 352 + +GL+ R + P E ERLE EL VI QMG+ YFLIV +F ++S Sbjct: 300 KELCYKGLKVRYPEITP----------ELKERLEYELGVIKQMGYVDYFLIVWDFFRFSH 349 Query: 353 DNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRD 412 + G+ GPGRGS AGSLVAY L IT +DP++++L+FERFLNPERVSMPD D DFC E+R Sbjct: 350 EKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLIFERFLNPERVSMPDIDSDFCYERRG 409 Query: 413 QVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA 472 +VI++V + YG+D VSQI+TFGTMA +A IRDVGR + + Y VDRI+K+IP G+T+ Sbjct: 410 EVIDYVVEKYGKDNVSQIVTFGTMAPRACIRDVGRAMNYSYAEVDRIAKMIPTVLGITID 469 Query: 473 KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDE 532 KA E P+L E Y+ D VK LID+AR LEG+ R+ HA GVVIA + ++ PL +E Sbjct: 470 KALEMNPELKEAYDIDSRVKELIDVARDLEGLPRHTSTHAAGVVIASQPLVNYVPLSKNE 529 Query: 533 EGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLD 592 E VTQF + +E GL+K DFLGLRTLT+I A++++ K+ +D+ I + Sbjct: 530 EA--IVTQFTMTTLEELGLLKMDFLGLRTLTVIRDAIDLVKKKTG----TEIDLDKINFE 583 Query: 593 DKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFI 652 D+ + ML + +T VFQLES GM + +K L+P+ ED+IA ++L+RPGP+ + +I Sbjct: 584 DENVYAMLGKGKTVGVFQLESAGMTNFMKELKPESLEDIIAGISLYRPGPMAE--IPKYI 641 Query: 653 DRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAM 712 K+ ++I Y L+P+L TYG+++YQEQVMQI + L+GY++G +D++RRAM Sbjct: 642 KNKNNPKDIEY-----LTPKLEPILNVTYGVMVYQEQVMQIVRDLAGYSMGRSDLVRRAM 696 Query: 713 GKKKPEEMAKQRSVFA------------EGAEKNGINAELAMKIFDLVEKFAGYGFNKSH 760 KKK + M ++R F G +NGI+ E+A KI+D + FA Y FNKSH Sbjct: 697 SKKKHKVMEEERKNFIYGIEDEKGNVIVPGCLRNGISEEVANKIYDQMMDFASYAFNKSH 756 Query: 761 SAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGL 820 +AAYA+V+Y T +L +YP EFMAA++ + N++KV + +M +++LPP IN Sbjct: 757 AAAYAVVAYYTAYLVYYYPTEFMAAILNSVRGNSDKVAAYIRAAKQMEIEVLPPKINKSF 816 Query: 821 YHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLE 880 F V +G+I +G+ AIK VGE ++ I + R + G F D C + + +N+R++E Sbjct: 817 GKFTV-QNGKIRFGLSAIKNVGENVVDNIAKVREEKGEFNSFVDFCNKISSGSINKRMVE 875 Query: 881 KLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYAS 940 L+ +GAFD G +R+ ++ + + K GQ +FG +E + E Y + Sbjct: 876 SLVKAGAFDCFGIYRSQILAVYEKIIDSVVNQRKKNIDGQMSLFGSFDDEFKDTEIKYPA 935 Query: 941 CQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPT------------ 988 + ++ L E+E GLYLTGHP+ Y + ++ + Sbjct: 936 IDEFDKKSKLAMEKEMTGLYLTGHPLEDYEEVLKNRTSAKTTDIIVDESLEEELIDEVTL 995 Query: 989 ---------ERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQ 1039 + G + GL+ +T+ + + TL+D +EV++F L+++ Sbjct: 996 HIEEQNSKIKDGDKVIIGGLITNVTRKITRTNSMMAFITLEDLYSSIEVIIFPKTLEQFN 1055 Query: 1040 QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLN 1099 +++ +D I+++ G+V+ + K+ + + ++ L I + ++++ Q + Sbjct: 1056 KIIMEDEIVLIKGRVTKRE-DEQPKIICDYI---ERVFNFSSKKLYIQIENKKMLSQTKS 1111 Query: 1100 RLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSEQVEL 1157 +++ + G IP +Y + R + + ++ ++ +L ++ G E V+L Sbjct: 1112 DIKKIAILNN-GNIP--IYICTKEERKKFLISREFWINENEDVLKIIKQKYGEENVKL 1166 >UniRef50_B5YIK8 DNA polymerase III alpha subunit n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YIK8_THEYD Length = 1135 Score = 1252 bits (3239), Expect = 0.0, Method: Composition-based stats. Identities = 464/1167 (39%), Positives = 694/1167 (59%), Gaps = 64/1167 (5%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS FVHL +H++YS++DG K L+++A MPA+AITD NL G+V+F+ + A Sbjct: 1 MSMSEFVHLHIHTEYSLLDGAIKINELIEQAKKYNMPAVAITDHGNLFGVVEFFKKANKA 60 Query: 61 GIKPIVGADFNVQCDLLGDE-------------LTHLTVLAANNTGYQNLTLLISKAYQR 107 G+KPI+G + V D+ HLT+L N GY+NLT L++++Y Sbjct: 61 GVKPIIGCEVYVAPQSRFDKTKINKDPGMPEEASFHLTLLVENEEGYKNLTRLVTRSYLE 120 Query: 108 GYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYF 167 G+ P ID + L N+GL+ LSG G++ +++ N + ++ F + +F Sbjct: 121 GF-YYKPRIDMELLSMYNKGLLALSGCLKGEIPYNIVYENIERAENTAKTLKDIFGNNFF 179 Query: 168 LELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDD 227 LE+ P++ +EL++ +PVVATND ++ SD AHEI + I G T+ D Sbjct: 180 LEIQSNSLPEQTIANRGLIELSKKFDIPVVATNDCHYLHKSDARAHEILLCIQTGKTIKD 239 Query: 228 PKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM- 286 KR + S + Y +S EEM F +IPEAL NT++IA+RCN +RLGE+ LP++ Sbjct: 240 EKRLKFQSDEFYFKSPEEMYSAFVEIPEALKNTLQIAERCNFKLRLGEHKLPKYNVPQGY 299 Query: 287 STEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVME 346 + E+YL K A+EGL+ER + +Y +RLE EL+VI +MGF YFLIV + Sbjct: 300 TAEEYLKKLAQEGLKERFKGNVAE---------DYIKRLEEELKVITEMGFASYFLIVWD 350 Query: 347 FIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 406 FI +++ +PVGPGRGS AGSLVAYALKITD+DP+++ LLFERFLNPER+S+PD DVDF Sbjct: 351 FINYARRKSIPVGPGRGSAAGSLVAYALKITDIDPIKYGLLFERFLNPERISLPDIDVDF 410 Query: 407 CMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPD 466 C ++R++VI++VA+ YG+D V+ IITFGTMAA+AV+RDVGR L PY VD+I+K+IP Sbjct: 411 CKDRREEVIQYVAENYGKDRVAHIITFGTMAARAVVRDVGRALNIPYADVDKIAKMIPF- 469 Query: 467 PGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 +L +A EP+L E+Y +E VK LID+A +LEG+ R+A +HA GVVI+P + D Sbjct: 470 ACPSLEEALNLEPRLKELYNKNETVKELIDIALRLEGLARHASQHAAGVVISPEPLEDLM 529 Query: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586 PLY + + ++QFD +E GL+KFDFLGL+TLT+I+ ++ + + +D+ Sbjct: 530 PLYKNSGEETVISQFDMKALEDVGLLKFDFLGLKTLTVIDDTIKYVKAQGK-----DIDL 584 Query: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 IPLDD +++ +L +TT VFQLESRGMK+L+KR++P FED+IALVAL+RPGPL SG Sbjct: 585 NNIPLDDSETYRLLSSGQTTGVFQLESRGMKELLKRMEPQRFEDLIALVALYRPGPLGSG 644 Query: 647 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 MVD+FI RK G + Y + LK +L+ TYG+ILYQEQVM+IA ++G+T+G AD Sbjct: 645 MVDDFIKRKKGLVPVEY-----ELPELKDILDETYGVILYQEQVMKIANKIAGFTMGQAD 699 Query: 707 MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 +LR+AMGKK PE MA + F +GA+KNGI E A +F+++ F YGFNKSHSAAYA Sbjct: 700 VLRKAMGKKIPELMASLKEEFIQGAQKNGIPYEKAESLFNIMAAFGEYGFNKSHSAAYAY 759 Query: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 ++Y T +LKAHYP EF AA ++ +M +T K+V ++EC G++I PDIN F V Sbjct: 760 LAYITAYLKAHYPQEFFAANLSNEMGDTNKIVKFINECKAWGIEIKGPDINESDRAFTV- 818 Query: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 + I +G+ A+KGVG ++ I+ R K F + D R DT+K+N++V+E LI +G Sbjct: 819 KEKFIRFGLEAVKGVGGSALQCILNEREK-KKFTSIDDFLTRLDTRKVNKKVIESLIKAG 877 Query: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPE 946 AFD L P + +A H G G+ ++ + + W Sbjct: 878 AFDSLYP------QYTPNQARAIAMHELLSFKGVKSSRGLF--------FTHENIEAWDN 923 Query: 947 QVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDM---------HPTERGKVITAA 997 VL E+ +LG YLTGHP+ + + + + D+ + E I A Sbjct: 924 NTVLSEEKSSLGFYLTGHPMKPLRPVLNK-INVSTIADIFDTDEDDFVNNNEETHEIKIA 982 Query: 998 GLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFD 1057 G+V + ++G T++D +GR+EV+++ + K+ +L + +++ G + Sbjct: 983 GIVEEIKSKAKEKGVT-AYITIEDETGRVEVVIYPELFKKFSNILTEKNAILIKGIIF-- 1039 Query: 1058 DFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHL 1117 + K ARE+ D+ K ++I +D + ++L +RQ LE +G +++ Sbjct: 1040 KYPDSTKFLAREIEDLRNVDLKIKYEISIDCSDTEKAYRILKEVRQCLEERHNGEGNIYI 1099 Query: 1118 YYQRADARARLRFGATWRVSPSDRLLN 1144 D + + ++ Sbjct: 1100 CLNLPDYHVIILSPFEPCIDFETKIQK 1126 >UniRef50_D0SVP0 DNA polymerase subunit III n=3 Tax=Gammaproteobacteria RepID=D0SVP0_ACILW Length = 1190 Score = 1249 bits (3233), Expect = 0.0, Method: Composition-based stats. Identities = 580/1168 (49%), Positives = 774/1168 (66%), Gaps = 39/1168 (3%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL +H+++S+ + + + LVK A MPALA+TD +NL VKFYG GIKPI Sbjct: 3 FVHLGIHTEFSITESIVRIPDLVKAAEEEQMPALALTDLSNLHAAVKFYGKCLSKGIKPI 62 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 +G++ + D +T+LA NTG++NLT L+S+ + G P + + W++ Sbjct: 63 LGSEIRL-----NDAEHRMTLLAMTNTGWRNLTELVSEGFISGQQLDIPCVQKQWILNQP 117 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 185 E +I L G DVG+ L+ N + + + E F +R +L L RT RPDE++++ A Sbjct: 118 EDMIALLG-MHSDVGKMLMSSNPQKAEPLLEEWVEKFGNRVYLALTRTNRPDEDNFILEA 176 Query: 186 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 245 V+LA+ + VVA NDV F+ D++AHE RV I DG+ L D +RP+ YSP+QY +S EE Sbjct: 177 VKLAKKYNIGVVAHNDVHFMTRDDYEAHEARVCIADGYVLGDNRRPKTYSPEQYFKSAEE 236 Query: 246 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTED-YLVKRAKEGLEERL 304 M LF+DIP A+ NT IAKRCNVT++LG+YFLP +P + T D + +KEGLEERL Sbjct: 237 MTALFSDIPSAIENTYHIAKRCNVTLQLGKYFLPDYPIPEGHTIDTFFAHLSKEGLEERL 296 Query: 305 AFLFPDE---EERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPG 361 FL+P E E+ + R YDER+E E+ +IN MGFPGYFLIVM+FIQWSK NGVPVGPG Sbjct: 297 NFLYPPEQRDEDWPEIRKPYDERIEYEINIINSMGFPGYFLIVMDFIQWSKSNGVPVGPG 356 Query: 362 RGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADM 421 RGSGAGSLVAY+LKITDLDPL ++LLFERFLNPERVSMPDFDVDFC+ RD+VI++VA Sbjct: 357 RGSGAGSLVAYSLKITDLDPLRYELLFERFLNPERVSMPDFDVDFCIAGRDRVIDYVART 416 Query: 422 YGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFE-AEPQ 480 YGRDAVSQI TFGTMAAK IRDV RVLG YG DRISK+IP P AEPQ Sbjct: 417 YGRDAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMIPTKPLGLSLLESLEAEPQ 476 Query: 481 LPEIY-----EADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGK 535 L +I ++ + +MA KLEG+TRN GKHAGGVVI+PTKITDF+ + CD +G Sbjct: 477 LKDIVTNPSNPDHDDAAEIWEMALKLEGITRNTGKHAGGVVISPTKITDFSAVMCDADGT 536 Query: 536 HPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKK 595 V QFDK DVE AGLVKFDFLGLR LT+I A++ INKR + PLDIA I L+DK Sbjct: 537 GRVAQFDKDDVESAGLVKFDFLGLRNLTVIEDAVKNINKR--IKADKPLDIAYIQLEDKD 594 Query: 596 SFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRK 655 ++ + + TTAVFQ ES GMK ++K +P FE++IA V+L+RPGP+ ++ +FI R Sbjct: 595 AYLVFANANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRPGPMD--LIPDFIHRM 652 Query: 656 HGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKK 715 HG D ++ H L+ VLEPTYGI++YQEQVMQ AQ +GYTLGGAD+LRRAMGKK Sbjct: 653 HG------GDFEYLHPLLEGVLEPTYGIMVYQEQVMQAAQYCAGYTLGGADLLRRAMGKK 706 Query: 716 KPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 775 KPEEM KQR +F EGA K I+ A IFD +EKFAGYGFNKSH+AAYALV+YQT WLK Sbjct: 707 KPEEMVKQRQIFIEGASKKDIDEATANHIFDYMEKFAGYGFNKSHAAAYALVAYQTAWLK 766 Query: 776 AHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGI 835 AHYPAEF++AV+T++M NT+ VV L+D+C + L++LPP +N LY FH D+ IVYG+ Sbjct: 767 AHYPAEFLSAVLTSEMQNTDNVVFLIDDCRKNNLEVLPPSVNMSLYQFHAIDEQTIVYGL 826 Query: 836 GAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHR 895 GAIKGVGE ++++I++R + G FR+LFD C R D KK+N+R LE LI SGA D LG R Sbjct: 827 GAIKGVGEAAMQSVIDSRAQEGPFRDLFDFCHRIDLKKINKRTLEALIRSGALDCLGIDR 886 Query: 896 AALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERE 955 A LM L +A++AA+Q G D+FG + E + + +PW ++V L GE++ Sbjct: 887 ADLMAQLPEAVQAAEQARSNRETGIMDLFGEVEEVQRKPSK---PVKPWADEVRLKGEKD 943 Query: 956 TLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIG 1015 TLGLYLTGHPI+ Y E++ +V ++ ++ PT RG AGLVV NR+ Sbjct: 944 TLGLYLTGHPIDVYRNELKAFVPC-QINELTPTRRGVTTVFAGLVVDIANFP----NRM- 997 Query: 1016 ICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDE 1075 + TLDD + R+E+ + ++++++++ D+++++ G++ + + ++E Sbjct: 998 MMTLDDGTARIEISANHERFNRFKEIIQLDKVVVIEGEIYEREGFDRPMGRLTKAFSLNE 1057 Query: 1076 AREKYARGLAISLTDRQIDDQLLNRLRQSLEPH----RSGTIPVHLYYQRADARARLRFG 1131 R+K A + I+LT L L+Q L P+ S IPV LY A L G Sbjct: 1058 IRQKRANSIKITLTAEHFSKSLSRDLQQILTPYCNVDMSAHIPVILYLDYPYATTELHLG 1117 Query: 1132 ATWRVSPSDRLLNDLRGLIGSEQVELEF 1159 W+V+P D LL LR G E + +E+ Sbjct: 1118 LNWKVAPLDELLAKLRDYFGKEALHIEY 1145 >UniRef50_B8FTK4 DNA polymerase III, alpha subunit n=2 Tax=Desulfitobacterium hafniense RepID=B8FTK4_DESHD Length = 1190 Score = 1249 bits (3231), Expect = 0.0, Method: Composition-based stats. Identities = 482/1223 (39%), Positives = 680/1223 (55%), Gaps = 105/1223 (8%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL VH++YS++DG A+ LVKKA LGMP++AITD + G++ FY A AGIKPI Sbjct: 3 FVHLHVHTEYSLLDGAARIEKLVKKAVELGMPSVAITDHGVMYGIIDFYKACKKAGIKPI 62 Query: 66 VGADFNVQCDLL-------GDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDR 118 +G + V D HL +LA N GY+NL L+S A+ G+ P +D+ Sbjct: 63 IGCEVYVAPHRRTEKVPGRDDNNRHLVLLAENEEGYKNLIKLVSMAHIEGF-YYKPRVDK 121 Query: 119 DWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRTGRPD 177 D L + GLI LS G+V LL E YEE F +FLE+ G + Sbjct: 122 DILRRHSRGLIALSACLAGEVSEYLLNNQLETAVESALEYEEIFGKGNFFLEVQDHGLEE 181 Query: 178 EESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQ 237 ++ E+ G+P+VATNDV +++ D ++ + I G L D R S + Sbjct: 182 QQRVNTGMFEVQRRTGIPMVATNDVHYVNKEDAFIQDVLICIQTGKNLTDASRMSFSSEE 241 Query: 238 QYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKRA 296 +++SE EM LF + PE L NT IA+RC V + G+ +LP F + + + YL K+ Sbjct: 242 FFLKSEAEMNLLFGEHPEILENTARIAERCQVDFKFGDNYLPVFEVPEGYTLDTYLRKKC 301 Query: 297 KEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGV 356 E +P+ +R E ERL+ EL VI Q GF GYFLIV +F Q+++ NG+ Sbjct: 302 YEA----FPLFYPN------QRTEEKERLDYELGVIAQTGFSGYFLIVADFCQYARQNGI 351 Query: 357 PVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIE 416 VGPGRGS A S+VAY + IT ++P++ DLLFERFLNPER+SMPD D+DF + R++VI Sbjct: 352 AVGPGRGSAAASMVAYLMGITTVEPMQHDLLFERFLNPERISMPDIDIDFDPDGRERVIN 411 Query: 417 HVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFE 476 +V + YG D V QIITFGTM AKA IRDVGRVLG P VD+++K IP D GMTL KA Sbjct: 412 YVMEKYGADKVCQIITFGTMGAKAAIRDVGRVLGIPLARVDKVAKAIPSDLGMTLEKALA 471 Query: 477 AEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKH 536 P L ++ E D E+K L ++AR LEG+ R+A HA GVVIA + + PL +G Sbjct: 472 VSPDLVKLLEEDGEIKKLYEIARSLEGMPRHASTHAAGVVIAKDALDTYIPLQRTSDGGF 531 Query: 537 PVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKS 596 +TQF VE GL+K DFLGLR LTII L+ I R + LD+ ++PLDDK + Sbjct: 532 TMTQFPMKTVEEVGLLKMDFLGLRNLTIIQETLKQIEGNRGE----VLDLQSLPLDDKAT 587 Query: 597 FDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKH 656 FDML +T VFQLES GM++++K L+P CFED+IA+VALFRPGP++ + FI RKH Sbjct: 588 FDMLSLGNSTGVFQLESGGMRNVLKELKPSCFEDIIAVVALFRPGPMEQ--IPEFIRRKH 645 Query: 657 GREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKK 716 G +V + H L+P+L TYG+I+YQEQVMQIA+ L+GY+LG AD+LRRAMGKKK Sbjct: 646 G------GNVSYLHPLLEPILRSTYGVIVYQEQVMQIARDLAGYSLGRADLLRRAMGKKK 699 Query: 717 PEEMAKQRSVF------------AEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764 E M ++R F GA K G+ + A +IFDL+ KFA YGFNK H+ AY Sbjct: 700 KEIMEEERQSFIYGLQSPSGEEIIPGALKLGLTEKEAAEIFDLMAKFAEYGFNKGHATAY 759 Query: 765 ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824 A++SYQT +LKA+YP EF AA+++ M + +KV + E + G++ILPPD+ F Sbjct: 760 AVISYQTAYLKANYPLEFNAALISTVMSSADKVSFYIHEARQSGIEILPPDVQYSQVGFS 819 Query: 825 VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884 + G I +G+GAI+ VG +E IIEAR + G F L+D C R D K LN+RVLE L+ Sbjct: 820 IEGRG-IRFGLGAIRNVGVNVVEKIIEARQE-GLFDSLYDFCIRVDAKVLNKRVLESLLK 877 Query: 885 SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944 +GAF L RA + +L L+ A Q + + GQ +F + E IE + + Sbjct: 878 AGAFSLLCK-RAQGLLALDSILEIAQQRQRDKESGQISLFDFGDDLDEGIE--LPDVEEY 934 Query: 945 PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004 + +L E+E LGLYL+GHP+ L +++ V L + E K + G+V R Sbjct: 935 SPRELLTMEKEYLGLYLSGHPLESVLPKLKNAVSEDILTCLEGDEE-KKVILGGIVTGYR 993 Query: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLK 1064 VTKRG + L+D +G ++V++F + + L +D++++V G+ + D K Sbjct: 994 TTVTKRGEMMASFVLEDLTGTIDVLVFPRIFAQSAR-LTEDQVVVVEGRYNIRDDER--K 1050 Query: 1065 MTAREVMDIDEAREKY-------------------------------------------- 1080 + A + D++ E+ Sbjct: 1051 IFAERITDLENGAERTKPIGYKDYEKTQTREKAQTRTQPPTQPSTQSPPKLSAVPSAKPG 1110 Query: 1081 ---ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVS 1137 AR L + LL L H SGT PV Y+++ + ++ V+ Sbjct: 1111 AVPARKLYLRFPYEGTP--LLEEALPIL-RHYSGTHPVLFYFEQD--KKLIQGNRELWVN 1165 Query: 1138 PSDRLLNDLRGLIGSEQVELEFD 1160 + L+ L ++G V + + Sbjct: 1166 DLEELVQALSNILGESNVVWKVN 1188 >UniRef50_Q87EY0 DNA polymerase III subunit alpha n=22 Tax=Gammaproteobacteria RepID=DPO3A_XYLFT Length = 1193 Score = 1246 bits (3225), Expect = 0.0, Method: Composition-based stats. Identities = 569/1206 (47%), Positives = 758/1206 (62%), Gaps = 66/1206 (5%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAP--------------LVKKAAALGMPALAITDFTN 46 MS FVHL +H+++S+ D + L+ +A LG+PALA+TD N Sbjct: 1 MSTSSFVHLHIHTEFSLADSTIRVPEKPEQAHPKKAKQANLLSRAVELGLPALAVTDLNN 60 Query: 47 LCGLVKFYGAGHGAGIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQ 106 L L+KFY A GIKPI GAD + +T+L ++ GY NL+ LIS+ + Sbjct: 61 LFALIKFYKAAETVGIKPISGADLLIAEPEHP--PWGMTLLCRDHAGYLNLSQLISRGWL 118 Query: 107 RGYG-AAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDR 165 G+ G + DW+ + ++ L L G R G+ L +G + L ++ +A ++ F D Sbjct: 119 EGHRPEGGVAVHPDWVRDHHKNLFALIG-RHSLAGQLLAKGRADLAEQQLADWQHVFGDG 177 Query: 166 YFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTL 225 LEL RTGR EE + A+++A RG+PV+A+NDVRF+ SDF AHE RV I G L Sbjct: 178 LHLELTRTGRDGEEPFNQFALQVAGIRGIPVIASNDVRFLVQSDFLAHEARVCIASGRML 237 Query: 226 DDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTG- 284 DDPKRPR YS QQY+RS EEM LFADIP+AL NT +A+RCN+ +RLG YFLP +P Sbjct: 238 DDPKRPRTYSEQQYLRSSEEMAALFADIPDALDNTRTLAQRCNIEMRLGTYFLPNYPVPN 297 Query: 285 DMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIV 344 D + + ++ K++ EGLE RL + R +Y RLE EL I +MGF GYFLIV Sbjct: 298 DETLDSWIRKQSHEGLEARL---LKHPLAPGQTREDYVTRLEFELDTIIKMGFSGYFLIV 354 Query: 345 MEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDV 404 +FIQW K G+P+GPGRGSGAGSLVA+AL ITDLDPL ++LLFERFLNPERVSMPDFD+ Sbjct: 355 ADFIQWGKQQGIPIGPGRGSGAGSLVAWALLITDLDPLPYNLLFERFLNPERVSMPDFDI 414 Query: 405 DFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIP 464 DFCME+RD+VI +VA YGR+ VSQIIT+GTMAAKAV+RDVGRVLG PYG VD ++KLIP Sbjct: 415 DFCMERRDEVISYVARKYGRERVSQIITYGTMAAKAVVRDVGRVLGFPYGLVDSVAKLIP 474 Query: 465 PDPGMTLAKAF-------EAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVI 517 G+TL A A +L + Y+A+E+V+ L+++AR+LE +TRNAGKHAGGVVI Sbjct: 475 STLGITLKDAMGEGETNDNASAELIQRYQAEEDVQELLNLARQLEDLTRNAGKHAGGVVI 534 Query: 518 APTKITDFAPLYC----DEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMIN 573 AP +T+F PL+ + GK+PVTQFDK+DVE GLVKFDFLGLRTLTII+WA++ IN Sbjct: 535 APNPLTEFCPLFAEHDENGRGKNPVTQFDKNDVEEVGLVKFDFLGLRTLTIIDWAVKAIN 594 Query: 574 KRRAKNGEPPLDIAAIPLDDKKSF-DMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMI 632 KR A+ P+DI A+PLDD ++ D+ T+AVFQ ES GM+ L+K +PD FED+I Sbjct: 595 KRHARACIDPVDITALPLDDIPTYKDVFASGNTSAVFQFESSGMRRLLKDARPDRFEDLI 654 Query: 633 ALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQ 692 ALV+L+RPGP+ ++ F RKHG +E YPD K +L+ TYGI++YQEQVMQ Sbjct: 655 ALVSLYRPGPMD--LIPEFTARKHGVQETIYPD-----PRTKNILKDTYGIMVYQEQVMQ 707 Query: 693 IAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFA 752 +AQ++ GY+LG AD+LRRAMGKK P EMAK R +F EGA K G++A A +IFDL+EKFA Sbjct: 708 MAQIVGGYSLGSADLLRRAMGKKVPAEMAKHREIFREGAAKGGMDAVKADEIFDLMEKFA 767 Query: 753 GYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKIL 812 GYGFNKSH+AAYALVSYQT WLK HYPAEFMAA +++DMDNT+KVVG +DE + LK+L Sbjct: 768 GYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEARNLNLKVL 827 Query: 813 PPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTK 872 P+IN Y F I YG+GAIKGVG+ EAI++ R G + L D C R + Sbjct: 828 RPNINHSAYMFEATHADTIQYGLGAIKGVGQSVCEAIVKERLHYGPYTSLLDFCTRVTSA 887 Query: 873 KLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPE 932 KLNRR LE +I +GA D LG +RA++M L + +KA +Q ++ GQ +FG Sbjct: 888 KLNRRALEAMIHAGALDELGKNRASVMLQLPEVIKATEQMSRERESGQNSLFGNADPGTP 947 Query: 933 QIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGK 992 I+ C+ WP +L+GERETLGLY +GHP + Y K+++ VG G Sbjct: 948 VIQLDLPECEEWPLTRMLNGERETLGLYFSGHPFDPYRKQVKELVGCDLNTSALERILGS 1007 Query: 993 VIT---------------AAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDK 1037 AGLVV+ R ++G+ L+D GR+E F+DAL + Sbjct: 1008 QQRGNGEKRTWQPEVNTILAGLVVSVR----RKGDSQVFVQLEDGRGRIECSAFSDALAE 1063 Query: 1038 YQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQL 1097 + LL +DRILIV G + D+F+GG + R+ D + YA+ L + + R Sbjct: 1064 FGHLLTRDRILIVKGGLREDEFNGGYSLRIRQCWDYAQLCTDYAQRLLLRVDLR--TSHA 1121 Query: 1098 LNRLRQSLEPHRSGTIPVHLYYQRADAR----ARLRFGATWRVSPSDRLLNDLRGLIGSE 1153 R+ L +R G P+ L L V LL+ L+ Sbjct: 1122 WERIDAILARYRPGNTPLRLDLLLNSTHGPVAGTLDLSGGQSVRIEQSLLDKLQKDPAVS 1181 Query: 1154 QVELEF 1159 ++++++ Sbjct: 1182 KLKVKY 1187 >UniRef50_A6G5Y5 DNA polymerase III, alpha subunit n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G5Y5_9DELT Length = 1255 Score = 1242 bits (3213), Expect = 0.0, Method: Composition-based stats. Identities = 474/1254 (37%), Positives = 704/1254 (56%), Gaps = 114/1254 (9%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 F HL +H+ YS++DG + L K GM ++A+TD N+ G V+FY G+KP Sbjct: 14 DFAHLHLHTQYSLLDGAIRMNDLCGKVKERGMKSVAMTDHGNMFGAVQFYQQAKAHGVKP 73 Query: 65 IVGADFNVQ----CDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 I G + + + H+ +LA N GYQNL L+S + G+ P IDR Sbjct: 74 IFGCEAYIADGDAPAKTDRKNYHIVLLAKNEVGYQNLQRLVSYGHLEGF-YYNPRIDRKT 132 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRTGRPDEE 179 L E +EGL+ LS G + R + G+ E + Y + F P YFLEL G +E Sbjct: 133 LREHSEGLVGLSACLGGHISRMITGGDMDGARERIREYADIFEPGSYFLELQPNGMELQE 192 Query: 180 SYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQY 239 +L +P+VATND +++ S+ AHE+ + + G T++D KR ++ + + Sbjct: 193 KVNADLAQLGRDLDVPIVATNDCHYVNQSEAYAHEVLMCMGMGRTINDEKRLKHDCEEFF 252 Query: 240 MRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTE-DYLVKRAKE 298 +++ ++M F PEA+ N IA+ CNV + LG+ LP F + + E +YL K A+E Sbjct: 253 IKTPQQMWGYFERYPEAMHNAARIARMCNVELSLGKPELPDFKLPEGTDEVEYLRKVARE 312 Query: 299 GLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPV 358 GL++R+ L + Y ERLE EL +I M FPGYFLIV +FI+ +K GVPV Sbjct: 313 GLDQRIRELRALG--KAPDTDVYFERLERELGIIINMKFPGYFLIVWDFIKEAKKMGVPV 370 Query: 359 GPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHV 418 GPGRGSGAGSLVAY+++ITD+DP+++DLLFERFLNPERVSMPDFD+DFCM++R++VI++V Sbjct: 371 GPGRGSGAGSLVAYSMRITDIDPMQYDLLFERFLNPERVSMPDFDIDFCMDRREEVIQYV 430 Query: 419 ADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAF--- 475 D YG+ V QI TF ++ A+ ++RDV RV+ + ++K++P P ++L+ Sbjct: 431 TDHYGKKRVGQIATFHSLKARGLLRDVCRVMEKLPAEANELAKMVPEGPKVSLSLCMADP 490 Query: 476 ------------------------EAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKH 511 EA +L EAD VK ++D+ LEG+ R+AG H Sbjct: 491 KAIRAKMKKEPEKAGKLEGKLQIAEAATKLRLRCEADPGVKQIVDIGCSLEGLNRHAGMH 550 Query: 512 AGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEM 571 A G+VI ++T+ P C + VTQ+ +DVE AGLVKFDFLGL+TLT+I A++ Sbjct: 551 AAGIVIGNRELTEHVP--CFKADDKIVTQYTMNDVEQAGLVKFDFLGLKTLTVIKHAVDQ 608 Query: 572 INKRRA---------KNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKR 622 IN + P DI IP+DD + + M+ R ETT VFQLES G K L+++ Sbjct: 609 INGLEGPWRLDPTQQGTADKPFDIDTIPMDDAEVYAMISRGETTGVFQLESTGFKKLLQK 668 Query: 623 LQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYG 682 L+PD FED+IA VAL+RPGPL+ GMVD FI+ KHGR +I YP HE L VL TYG Sbjct: 669 LKPDVFEDIIAAVALYRPGPLEGGMVDQFIECKHGRRKIEYP-----HELLADVLRETYG 723 Query: 683 IILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEK-NGINAELA 741 + +YQEQVM AQ+L+G++LGGAD++RRAMGKKK +EM +QR++F EG E N I+A+ A Sbjct: 724 VFVYQEQVMLAAQILAGFSLGGADLMRRAMGKKKVKEMERQRALFVEGCESVNNIDAKKA 783 Query: 742 MKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLV 801 +IFDL++KFAGYGFNKSHSAAY L++YQT +LK HYP FM +MT D D +E VV + Sbjct: 784 NEIFDLIDKFAGYGFNKSHSAAYGLITYQTAYLKHHYPEAFMCGLMTCDKDKSENVVKFI 843 Query: 802 DECWRMGLKILPPDINSGLYHFHVN----------------------------------- 826 E M + +LPPD+N F+V Sbjct: 844 AEARSMDITVLPPDVNESASDFNVVVRDRPELSEEELKKKKQLARKSKKVRRRQAREDSR 903 Query: 827 DDGE---IVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLI 883 +G+ I +G+GA++ VG +++I+ AR + G F+ +F+LC R D K++N+R LE L+ Sbjct: 904 PEGKLLAIRFGMGAVRNVGGNAVDSILAAREEEGPFKNIFELCRRVDLKRVNKRTLEGLV 963 Query: 884 MSGAFDRL--GPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASC 941 SGAFD + G HRA ++ ++ A++ + GQ +F + + +E+ Y Sbjct: 964 HSGAFDSVSEGQHRAGVVAAIESAVEQGQSSQRDRESGQGGLFDAFSSDQVYVEE-YPKV 1022 Query: 942 QPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVV 1001 + W + L ER+ LG YLTGHP+++Y ++I+R+ VR+ ++ G+ + G++ Sbjct: 1023 REWAPKQRLLNERDALGFYLTGHPLDRYQQDIDRHAS-VRIGELRKELAGQEVVLGGVIT 1081 Query: 1002 AARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALD-----------KYQQLLE--KDRIL 1048 R + TK G +G L+D+ GR+EV++F + L + + Sbjct: 1082 EMRQVTTKAGKTMGFFQLEDQFGRVEVIVFPRTWATPIDPDEESAPSWGDWLMAHGEDPV 1141 Query: 1049 IVSGQVSFDDFSGG----LKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQS 1104 V+G++ + G K+ +V I + RE + + + L Q+DD+ + L+ Sbjct: 1142 FVTGKLEVEQNDMGEVSRYKILLAKVEPIAKVREARTKKVRLRLRAEQLDDRRILALKHL 1201 Query: 1105 LEPHRSGTIPVHLYYQRADA-RARLRFGATWRVSPSDRLLNDLRGLIGSEQVEL 1157 + HR G + + ++ FG ++V D L L L G EL Sbjct: 1202 VADHR-GQCSMEMSVTVPGRYATQVVFGDEFKVKADDSLFVALERLFGGPVAEL 1254 >UniRef50_C4Z382 DNA polymerase III subunit alpha n=1 Tax=Eubacterium eligens ATCC 27750 RepID=C4Z382_EUBE2 Length = 1188 Score = 1241 bits (3212), Expect = 0.0, Method: Composition-based stats. Identities = 438/1208 (36%), Positives = 657/1208 (54%), Gaps = 81/1208 (6%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F HL VH++YS++DG +K + K+A LGM +LAITD + G+++FY A AGIKP+ Sbjct: 3 FTHLHVHTEYSLLDGSSKIKEITKRAKELGMDSLAITDHGVMYGVIEFYEAAKKAGIKPV 62 Query: 66 VGADFNVQCDLL--------GDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIID 117 +G + V D+ HL +LA NNTGYQNL ++SK + G+ P +D Sbjct: 63 LGCEVYVAPGSRFDKGAGQSEDKYNHLVLLAENNTGYQNLMKIVSKGFTEGF-YYKPRVD 121 Query: 118 RDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRTGRP 176 ++ L E +EG+I S G+V R L RG + ++ F +FLEL G Sbjct: 122 KEVLREYHEGIIATSACLAGEVQRYLSRGMYETARDAALELQDIFGKGNFFLELQDHGIA 181 Query: 177 DEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSP 236 ++ + + G+ +V TNDV + + D DAH+I + I G L D R R Sbjct: 182 EQHYVNPQLMRMHNETGIELVCTNDVHYTYADDVDAHDILLCIQTGKKLSDENRMRYEGG 241 Query: 237 QQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTED---YLV 293 Q Y++SEEEM ELF PEA+ NT +IA+RCNV + G LP F + ++ YL Sbjct: 242 QFYLKSEEEMAELFKYAPEAVENTHKIAERCNVEIEFGVTKLPAFDVPEAYGKNSWVYLN 301 Query: 294 KRAKEGLEERLAFLFPDE---------------------EERLKRRPEYDERLETELQVI 332 EGL++R D +R + + +RL EL VI Sbjct: 302 ALCYEGLKKRYPDKTADICIEDIIEQAKASIVADRKDVVIKRAEDSNDIFQRLSYELSVI 361 Query: 333 NQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFL 392 MG+ YFLIV ++I ++K + +PVGPGRGS AGSLV+Y L IT LDP++++L+FERFL Sbjct: 362 YSMGYVDYFLIVWDYINYAKTHDIPVGPGRGSAAGSLVSYCLGITTLDPVKYNLVFERFL 421 Query: 393 NPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHP 452 NPERVSMPD DVDF E R +VI++V + YG++ V QIITFGTMAA+AVI+DVGRV+ P Sbjct: 422 NPERVSMPDIDVDFAPEGRQKVIDYVIEKYGKECVCQIITFGTMAARAVIKDVGRVMDLP 481 Query: 453 YGFVDRISKLIPPDPGMTLAKAFEAE--------PQLPEIYEADEEVKALIDMARKLEGV 504 Y VD I+K+IP G+T+ A + + +YEADE V+ LID A++LEG+ Sbjct: 482 YAMVDNIAKMIPQKVGVTIDSAMNGDADRDIKPNAEFKALYEADETVRDLIDKAKRLEGL 541 Query: 505 TRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTI 564 R+A HA GV+I+ + ++ P+ + VTQF+ +E+ GL+KFDFLGLR LT+ Sbjct: 542 PRHASVHASGVLISQKDVGEYVPVAVGAD-NVKVTQFEGPTLEHLGLLKFDFLGLRNLTV 600 Query: 565 INWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQ 624 I ++ + +P + IP +DK F+ + + + +FQLES GMK+ +K L+ Sbjct: 601 IQQT-----EKCEQQIDPAFSVDNIPYNDKAVFECISQGKCAGIFQLESGGMKNFMKELK 655 Query: 625 PDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGII 684 PDC ED+IA ++L+RPGP+ + +I K I+Y L+P+LEPTYG + Sbjct: 656 PDCLEDLIAGISLYRPGPMD--FIPQYIKGKENAGNITYEC-----PQLEPILEPTYGCM 708 Query: 685 LYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVF--------AEGAEKNGI 736 +YQEQVMQI + L+GY+ GG+D +RRAM KKK + M ++R F G KNGI Sbjct: 709 VYQEQVMQIVRDLAGYSWGGSDNVRRAMAKKKLDVMEQERQNFVYGNEANGVPGCIKNGI 768 Query: 737 NAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEK 796 + + A KI+D + FA Y FNKSH+A YA+V+YQT +LK H+P ++MA ++++ D T K Sbjct: 769 SEQTANKIYDEMMDFAKYAFNKSHAACYAVVAYQTAYLKVHFPVQYMAWLISSVTDKTSK 828 Query: 797 VVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKG 856 V + MG+ ILP D+N + F V I +G A+K +G I AIIE R Sbjct: 829 VAEYILAAREMGISILPVDVNKSVADFGVEGKN-IRFGFNAVKSMGRPTITAIIEERTNN 887 Query: 857 GYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAE 916 G F + D R +N+R +E LI++GAFD G R +MN + +A + K Sbjct: 888 GDFHSMQDFITRM-AGVINKRTVEHLILAGAFDTFGNTRRGMMNVYERMIDSAVKQNKDA 946 Query: 917 AIGQADMFGVLAEEPEQ-IEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIER 975 GQ +F +EE +Q +E Q + ++ +L+ E+E LG+Y+TGHP+++Y E+ Sbjct: 947 ISGQMSLFDFASEEDKQSLEMRVPDIQEFEKEDLLEREKEVLGVYVTGHPLDEYTGMWEK 1006 Query: 976 YVGGVRLKDMHPTE-------RGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEV 1028 ++ + E G T GL+ +V+ T G ++ T++D G +EV Sbjct: 1007 HISARSTDFLIDEETGQAKLMNGSKQTIGGLISNIKVITTGSGQQMAYLTIEDFVGSVEV 1066 Query: 1029 MLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISL 1088 ++F +KY++ + + ++G++ D ++ A V+ D R L + Sbjct: 1067 IMFPRNYEKYKRFFDTTNKVFITGRIQADADKPA-RLMADSVVSFDSV----PRRLWLRF 1121 Query: 1089 TDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRG 1148 + + L + G V +Y R + + V + LL L+ Sbjct: 1122 DSLAEYETHRDELADIFKE-SDGKDTVTIYCVAEKQR--IVLPQSQCVKVTSDLLYILKS 1178 Query: 1149 LIGSEQVE 1156 G + V Sbjct: 1179 KYGEKNVA 1186 >UniRef50_A7HG87 DNA polymerase III, alpha subunit n=4 Tax=Anaeromyxobacter RepID=A7HG87_ANADF Length = 1217 Score = 1241 bits (3211), Expect = 0.0, Method: Composition-based stats. Identities = 492/1222 (40%), Positives = 704/1222 (57%), Gaps = 89/1222 (7%) Query: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 P FVHL +H+ YS++DG + L+K A GM +A+TD NL G V FY AG+K Sbjct: 2 PDFVHLHLHTLYSLLDGAIRIKDLLKTVQAKGMKTVAVTDHGNLFGAVDFYKKAKDAGVK 61 Query: 64 PIVGADFNVQCDLLGDELT-----HLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDR 118 PI+G + V D + + HL +LA N G+ NL L SKA+ G+ P ID+ Sbjct: 62 PIMGMEAYVAGDKGRHDRSERVGRHLILLAKNAEGWANLRFLSSKAFTEGF-YYDPRIDK 120 Query: 119 DWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRTGRPD 177 L + ++GL+ L+ G+V R +G+ Y + F P +FLE+ G + Sbjct: 121 QLLRDHSKGLVGLTACLAGEVPRLARQGDMDGARRVAREYRDIFEPGSFFLEVQSNGMRE 180 Query: 178 EESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQ 237 + +L G+P+VAT D ++ D AHE+ + I T DPKR R+ + Sbjct: 181 QLDVNAKLAQLGRDEGIPLVATADAHYVSRQDAKAHEVLMCIASNKTFQDPKRLRHETDG 240 Query: 238 QYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKRA 296 +++S ++M + EA+ NT+ IA+ CNV ++LG+ FLP+F D S E+++ K A Sbjct: 241 LFIQSPDDMVAALPEYREAIDNTIRIAEMCNVELQLGKSFLPRFQLPDGVSEEEWIEKLA 300 Query: 297 KEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGV 356 K+GL+ R + R Y +RLE EL VI +MGF GYFLIV +FI W K + + Sbjct: 301 KDGLDARFREIDGKYPH---DRDAYRQRLEMELGVIKKMGFSGYFLIVQDFINWGKQHQI 357 Query: 357 PVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIE 416 PVGPGRGSGAGS+VA++L+ITDLDPL ++LLFERFLNPERVSMPDFDVDFC +RD+VI+ Sbjct: 358 PVGPGRGSGAGSIVAWSLRITDLDPLRWNLLFERFLNPERVSMPDFDVDFCQNRRDEVID 417 Query: 417 HVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIP-PDPGMTL---- 471 +V + YG+D V QIITFG++ A++VIRDV RV+G P+ D+I+KL+P P G T Sbjct: 418 YVREKYGKDNVGQIITFGSLKARSVIRDVVRVMGLPFAEGDKIAKLVPDPVQGKTPPLKE 477 Query: 472 ----AKAFEAEPQLPEIYEA--------DEE-------VKALIDMARKLEGVTRNAGKHA 512 + AEP+L E+Y+ DE+ K L+D+A LEG+ R AG HA Sbjct: 478 LVFGSDKMPAEPRLEELYKKPTVISQWVDEKGVQHTVTTKDLLDIAMSLEGLNRQAGLHA 537 Query: 513 GGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMI 572 GVVIA + D+ P Y D++ + V+QF K +VE AGLVKFDFLGL+TLT+I+ AL M+ Sbjct: 538 AGVVIADKPLWDYVPAYKDDKSEMLVSQFAKEEVEAAGLVKFDFLGLKTLTVIDDALRMV 597 Query: 573 NKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMI 632 + + A IP+DD K ++++ R +T VFQ+ES G +++ +++P FED+I Sbjct: 598 KQNHPE--MKDFTAADIPIDDPKVYELISRGDTAGVFQMESSGFTEMVIKMKPSRFEDVI 655 Query: 633 ALVALFRPGPLQSG------MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILY 686 A AL+RPGPL MVD +IDRKHGRE++ Y H L+PVLEPTYG+I+Y Sbjct: 656 AAGALYRPGPLDQKLEDGRTMVDVYIDRKHGREKVVY-----DHPKLEPVLEPTYGVIVY 710 Query: 687 QEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFD 746 QEQVMQI+QVL+GY+LG AD+LRRAMGKKK E MAK+R F GA K+G++ ++A IFD Sbjct: 711 QEQVMQISQVLAGYSLGQADLLRRAMGKKKAEVMAKERVGFLAGAVKSGVDEKVAGGIFD 770 Query: 747 LVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWR 806 L+EKFA YGFNKSHSAAY L++ QT WLKAHYP EFMAA+++++ NT+KVV + E Sbjct: 771 LMEKFAAYGFNKSHSAAYGLLTVQTAWLKAHYPVEFMAALISSEASNTDKVVLHISEARA 830 Query: 807 MGLKILPPDINSGLYHF----------------HVNDDGEIVYGIGAIKGVGEGPIEAII 850 G+++LPPD+N F + G I +G+GA++GVG+ ++AI+ Sbjct: 831 DGIEVLPPDVNESDKDFGAFGPAESARPSTGPGRAANKGRIRFGLGAVRGVGDSAVQAIL 890 Query: 851 EARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAAD 910 EAR +GG F+ L+DL +R D+KK+N++V+E L+ SGA D G R L + A A Sbjct: 891 EARAEGGPFKTLYDLASRVDSKKINKKVVEALVKSGALDFEGVPRWQLFAGIDSAFAAGA 950 Query: 911 QHAKAEAIGQADMFGVLAEEPEQIEQSYA---------SCQPWPEQVVLDGERETLGLYL 961 A GQA +FG L + + Y + + WPE+V L E+E LG YL Sbjct: 951 SAQADRASGQASLFGALPAAQVEQKPRYPRPGDVVGELTVEEWPERVRLAFEKEALGFYL 1010 Query: 962 TGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDD 1021 TGHP+ Y KE+ RY + KV + M ++G R G TL+D Sbjct: 1011 TGHPLQGYEKEVRRYASTTCAAVANKRHGDKVSVVGVVAAVRERMNKEKGTRFGFLTLED 1070 Query: 1022 RSGRLEVMLFT-----------DALDKYQQLLEKDRILIVSGQVSFDDFSGG---LKMTA 1067 +G +EV+ + ++ + D L+V G+V ++ ++TA Sbjct: 1071 LTGTVEVVCWAARPANGQRPAQKGWTDWEVFCKSDEPLLVHGEVRINNREEENPRAEITA 1130 Query: 1068 REVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARAR 1127 ++ + R++ +A+ + ++ + L+ L H G ++ Sbjct: 1131 LDIEPLALVRKQKTSEIALRIDADRLTKERTTDLKALLGRHPGGCAITVRAVIPEESETT 1190 Query: 1128 LRFGATWRVSPSDRLLNDLRGL 1149 L A RV P D LL R L Sbjct: 1191 LSVAA--RVEPGDELLEAARRL 1210 >UniRef50_C4ZGM2 DNA polymerase III, alpha subunit n=7 Tax=Bacteria RepID=C4ZGM2_EUBR3 Length = 1181 Score = 1239 bits (3207), Expect = 0.0, Method: Composition-based stats. Identities = 429/1180 (36%), Positives = 651/1180 (55%), Gaps = 53/1180 (4%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F HL H++YS++DG K VK+ LGM + AITD N+ G+V+FY I P+ Sbjct: 18 FCHLHTHTEYSLLDGSNKIKEYVKRVKELGMNSAAITDHGNMYGVVEFYKTAKANDINPV 77 Query: 66 VGADFNVQCDLL--------GDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIID 117 +G + V + D HL +LA NNTGY NL ++S + GY P +D Sbjct: 78 IGCEVYVAPNSRFDRETSHGDDRYYHLILLAENNTGYANLMKIVSIGFTEGY-YYRPRVD 136 Query: 118 RDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRTGRP 176 + L +EGLI LS G++ R ++RG E Y++ F D +FLEL G Sbjct: 137 FETLERYHEGLICLSACLAGEIPRYIVRGFYDEAKEIARKYQDCFGKDNFFLELQDHGID 196 Query: 177 DEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSP 236 D++ + +++ + +V TNDV + SD +AH++ + I G + D R R Sbjct: 197 DQKLVNQQLLRMSKELEIGLVCTNDVHYTYESDAEAHDVLLCIQTGKKVSDEDRMRYDGG 256 Query: 237 QQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF--PTGDMSTEDYLVK 294 Q +++SEE+M LF EA+ NT +IA RCNVT+ G Y +P++ P G S E +L + Sbjct: 257 QFFVKSEEQMRALFPYATEAIENTQKIADRCNVTLEFGNYKIPKYEVPEGYDSAEAFLTE 316 Query: 295 RAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDN 354 ++G E+ + LK+ ++ EL +I MGF Y LIV ++I W + + Sbjct: 317 LCEKGFREKYIGCGEYSADELKK---IHADMDYELGIIKTMGFIEYILIVWDYINWCRTH 373 Query: 355 GVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQV 414 VGPGRGS AGS V Y ITD+DP++++LLFERFLNPERVSMPD DVDF +R + Sbjct: 374 DCWVGPGRGSAAGSRVCYCTGITDIDPVKYNLLFERFLNPERVSMPDIDVDFEYAERYRA 433 Query: 415 IEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKA 474 IE+V YG D+V+QI+TFGTMAA+ VI+ VG+ L PY DR++K++P + +T+ KA Sbjct: 434 IEYVQQKYGHDSVTQIVTFGTMAARGVIKSVGKALDFPYAETDRLAKMVPQELNITIDKA 493 Query: 475 FEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEG 534 + P+ IY++D V +IDMA++LEG+ + HA GVVI P +D+ PL +G Sbjct: 494 LQMNPEFKGIYDSDARVHEMIDMAKRLEGLPNHTSVHAAGVVIYPGVASDYVPLGRANDG 553 Query: 535 KHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDK 594 P +++ +E GL+K DFLGLRTLT++ +++ I R + +DI I +DK Sbjct: 554 S-PTAEYNMVQLEELGLLKMDFLGLRTLTVLKDSVKNIKASRGID----VDIDHIDFNDK 608 Query: 595 KSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDR 654 + D + +T VFQLES GM+ +K L P FED++A ++L+RPGP+ + N+I Sbjct: 609 GTLDFIGTGKTEGVFQLESAGMQSFMKELSPQSFEDIVAGISLYRPGPMD--FIPNYIKG 666 Query: 655 KHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK 714 K+ +EISY L+ +LEPTYG I+YQEQVMQI Q L+GYT+G AD +RRAM K Sbjct: 667 KNNPKEISYVT-----PELESILEPTYGCIVYQEQVMQIVQKLAGYTMGQADNIRRAMSK 721 Query: 715 KKPEEMAKQRSVF--------AEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 KK + +R F +G NGI+ + A I+D + FA Y FNKSH+AAYA Sbjct: 722 KKQYVIDAERQSFVYGDEERGIKGCVANGIDEKAANSIYDSMVDFAKYAFNKSHAAAYAK 781 Query: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 +S QT WLK +YP EFMAA+MT+ +DN+ K + C MG+K+LPPDIN G F Sbjct: 782 ISVQTAWLKNYYPVEFMAALMTSVIDNSAKAAQYLYSCRDMGIKVLPPDINCGQGEFTAE 841 Query: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKL-NRRVLEKLIMS 885 D + YG+ AIK +G I+ IIE R GG +R L D RT K+L N+R +E LI + Sbjct: 842 GD-HVRYGMYAIKSLGRPVIDQIIEERESGGRYRTLSDFIERTCQKELINKRAIENLIKA 900 Query: 886 GAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEP-EQIEQSYASCQPW 944 GA D L R + + K+ GQ +F ++++E + E Y + + Sbjct: 901 GACDSLDGTRKQMAMVYASIVDRVQHDKKSTMAGQMSLFDLVSDEDRQSFELKYPNVGEY 960 Query: 945 PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKV-------ITAA 997 + L E+E LG+YL+GHP+ +Y +++ + + + E G V + Sbjct: 961 DAEEALAYEKEVLGIYLSGHPLEKYAATLKKNITANAIDFVLEEESGAVKIEDNAHVVIG 1020 Query: 998 GLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFD 1057 G++ + TK + T++D +G +EV++F ++YQ+ L+ D + V G + + Sbjct: 1021 GMIATKTIKFTKYNQAMAFITIEDLTGTVEVIIFPRDYERYQRYLQDDAKIFVIGHATVE 1080 Query: 1058 DFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHL 1117 D G K+ +++ DE + L + + + +RL +++ G V + Sbjct: 1081 DEQNG-KIICEKIIPFDE----LPKQLWLRFDTMEDYKKNESRLLETIRESDGGD-EVII 1134 Query: 1118 YYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSEQVEL 1157 Y AD + + G + V+ ++ L+ L + E ++ Sbjct: 1135 YI--ADTKQMKKLGRNYSVNANNELMEQLLEFLDKENAKI 1172 >UniRef50_C1DXC6 DNA polymerase III subunit alpha n=3 Tax=Sulfurihydrogenibium RepID=C1DXC6_SULAA Length = 1172 Score = 1239 bits (3206), Expect = 0.0, Method: Composition-based stats. Identities = 454/1184 (38%), Positives = 685/1184 (57%), Gaps = 51/1184 (4%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 FVHL +H+ YS++DG K L KKA G A+ +TD N+ G V+FY G+KP Sbjct: 4 DFVHLHLHTHYSLLDGAIKIKDLAKKAVEYGYKAVGLTDHGNIFGAVEFYQEMKSVGVKP 63 Query: 65 IVGADFNVQCD-----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 I+G + + +L D+ HL + A + TG++NL L S +Y G+ Sbjct: 64 IIGMESYFTNNRFEKKGEGSDDILTDKNYHLILFAKDKTGFKNLMKLSSLSYTEGF-YYK 122 Query: 114 PIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRT 173 P ID + L + +EGLI + G + L +G + ++ F + + E+ Sbjct: 123 PRIDWELLEKYHEGLICQTACLKGFIPNLLSKGQYEEAKKYAKRLKDIFGEDLYFEIQVN 182 Query: 174 GRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLD--DPKRP 231 G ++E ++LA+ G+ VV TND +++ D AH++ A+ TL K Sbjct: 183 GLEEQEEANKGIIKLAKELGIKVVGTNDSHYLNPEDQPAHDVIKALQMKETLQSLQEKGK 242 Query: 232 RNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE---YFLPQFPTGD--- 285 + S EEM E F E L NT+EIA++CNV + E Y P++ Sbjct: 243 AFKVKGLHFTSPEEMYEKFKGYEEYLKNTMEIAEKCNVEIDTAETRGYLFPKYQIPGIEN 302 Query: 286 ---MSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFL 342 + Y K +KEGLE+RL +E+L+ EY ERL+ E+ VIN MGF YFL Sbjct: 303 PTQEDIKAYFEKLSKEGLEKRLEKEKNLSKEKLQ---EYRERLQYEIDVINNMGFAEYFL 359 Query: 343 IVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDF 402 IV +FI ++K+NG+PVGPGRGS GSLVAY L IT++DPL+ L+FERFLNPER+SMPD Sbjct: 360 IVQDFINYAKNNGIPVGPGRGSAGGSLVAYCLGITEIDPLKHGLIFERFLNPERISMPDI 419 Query: 403 DVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL 462 DVDFCME R++VI +V D YG D+V+QIITF M +K VIRDV RVLG PY D+I+K+ Sbjct: 420 DVDFCMENREKVIRYVKDKYGEDSVAQIITFNFMKSKMVIRDVARVLGFPYQEADKIAKM 479 Query: 463 IPPDP----GMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIA 518 I P P +T+ + EA P ++YE D +VK L+D+ARKLEG R+ G HA G+VIA Sbjct: 480 ILPGPIQGSTLTIDENLEANPDFRKLYETDPKVKQLLDLARKLEGSARHTGIHAAGIVIA 539 Query: 519 PTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAK 578 P + ++ P+Y D++G TQF+ +E GLVK DFLGL+TLT ++ ++I +R Sbjct: 540 PGPLDEYVPVYRDKDGN-KATQFEMKTLEQLGLVKMDFLGLKTLTELDLMKKLIKERHGI 598 Query: 579 NGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALF 638 ++ +PLDD+ + +LQ +TT VFQLES+GM+DL+ RL+P F+++IA++ALF Sbjct: 599 E----INYQDLPLDDENVYKLLQSGKTTGVFQLESKGMQDLLVRLKPTVFDEIIAILALF 654 Query: 639 RPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLS 698 RPGPL SGMVD +I+RKHGR+ I YP E +K VL+ TYG+I+YQEQ+M ++ +LS Sbjct: 655 RPGPLMSGMVDEYIERKHGRKPIEYP-----FEEVKEVLKETYGLIVYQEQIMFMSNILS 709 Query: 699 GYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNK 758 G+++ AD LR+A+GKK PE MAK + F EGA + G + E K++D +EKFA Y FNK Sbjct: 710 GFSMAEADTLRKAIGKKNPETMAKMKGRFVEGAVERGFDREKVEKLWDDIEKFASYSFNK 769 Query: 759 SHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINS 818 SHS AYA ++Y T W+K +Y EF A ++ +++++ K + L+ + G+K+LPPD+N Sbjct: 770 SHSTAYAYLTYWTAWVKTYYTDEFFAVKLSTEVNDS-KFLNLLIDMENFGIKLLPPDVNK 828 Query: 819 GLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRV 878 + F++ I +G+ IK VGE + I++ R K G F ++FD C R DTK N+RV Sbjct: 829 SMAEFYIESPKNIRFGLARIKNVGESSAKEIVKEREKNGEFVDIFDFCERLDTKTANKRV 888 Query: 879 LEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSY 938 LE LI +GAFD RA L+N++ A+ + + +++ GQ +F + ++ +Y Sbjct: 889 LESLIKAGAFDFEKVDRAILLNNVDKAISSGQKARESKMAGQNSLFALTTTPVVNVKHTY 948 Query: 939 AS--CQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGV-RLKDM----HPTERG 991 + E+ L E+E LG YL+GHPIN Y KE++ V + + D+ E Sbjct: 949 EDTGIKKLTEREKLKYEKEVLGFYLSGHPINAYKKELKGKVAKIGEIYDLVFSGKRPEGD 1008 Query: 992 KVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVS 1051 + AG+V ++ TK GN + + + D +G+++ F + L+ + LL+ D I+++ Sbjct: 1009 LKVKFAGVVDEIKLKKTKSGNTMMMFSFSDETGQIDCRAFPEKLEN-KDLLKDDNIVVLE 1067 Query: 1052 GQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSG 1111 G + DD + M V I+ K +G+ I + + + LL +L+Q + HR G Sbjct: 1068 GFIEIDDEQEKISMNVVNVEPIENFL-KDIKGVKIKIPKEKAMNGLLPKLQQLFKEHR-G 1125 Query: 1112 TIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSEQV 1155 V ++ + ++ + + V+ D + L + V Sbjct: 1126 DKDVVIHIYDRNFECEIQLHSDFCVNLEDEFKHKLLQYVAERDV 1169 >UniRef50_Q1AX16 DNA polymerase III catalytic subunit, DnaE type n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AX16_RUBXD Length = 1165 Score = 1237 bits (3202), Expect = 0.0, Method: Composition-based stats. Identities = 434/1178 (36%), Positives = 645/1178 (54%), Gaps = 62/1178 (5%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 F HL HS+YSM+DG ++ LV A GMP +A+TD N+ G V+FY AGIKP Sbjct: 7 EFAHLHCHSEYSMLDGASRIRDLVAFAREEGMPGIALTDHGNMYGAVRFYQEATKAGIKP 66 Query: 65 IVGADFNVQCDLLG------DELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDR 118 ++G + V HLT+LA GY+NL L + + G+ P +D Sbjct: 67 VMGCEVYVTEWGTPMSDRSRSRYYHLTLLARTPEGYKNLMKLSTAGFLHGF-YYKPRVDA 125 Query: 119 DWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDE 178 L G+I LSG +V +L G E + Y E F D +LE+ G ++ Sbjct: 126 RTLRRHGRGIICLSGCLSAEVPARILEGRLDRARELLLEYAEIF-DAVYLEMQDHGLEEQ 184 Query: 179 ESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQ 238 + L GLP+VATND + SD H++ + I G +DP R R + + Sbjct: 185 RRVNRGLLRLHRETGLPLVATNDSHYTARSDARMHDVLLCIGTGKFYNDPNRMRFHGEEF 244 Query: 239 YMRSEEEMCELFADIPEALANTVEIAKRCN-VTVRLGEYFLPQFPTGDMST-EDYLVKRA 296 Y++ EEM LFAD PEAL NT + + + LG+ LP FP + T YL + Sbjct: 245 YVKPVEEMARLFADHPEALENTAGVVRSVEGPGIELGKTRLPNFPKPEGYTGSQYLRELC 304 Query: 297 KEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGV 356 + GL +R D PE RL+ EL+ I +MGF YFLIV +F++++KD G+ Sbjct: 305 ERGLRKRYGRRASD--------PEVRRRLDFELETIARMGFEDYFLIVWDFVKYAKDRGI 356 Query: 357 PVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIE 416 VGPGRGS AGS+VAYAL+ITDLDPL++ LLFERFLNP+R+SMPD D+DF + R +V+ Sbjct: 357 AVGPGRGSAAGSIVAYALEITDLDPLQYSLLFERFLNPDRISMPDVDIDFSVAGRSEVMR 416 Query: 417 HVADMYG-RDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP-GMTLAKA 474 +V + YG + V+QIITFGT+ AKA IRD R+ +PY D+++KLIP P G TL Sbjct: 417 YVTEKYGGHEHVAQIITFGTIGAKAAIRDAARIFQYPYAETDKLAKLIPEKPVGTTLKDV 476 Query: 475 F-----------EAEP----QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAP 519 E P ++ E DE K ++D A ++EG R+AG HA GVVI+ Sbjct: 477 LRRTGDGRYEPTEKHPGAAREILRFVERDEAAKRVLDTAFEIEGYARHAGTHAAGVVISE 536 Query: 520 TKITDFAPLYC-DEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAK 578 +TD PL ++ + Q SDVE GL+K DFLGLR L +I L ++ + + Sbjct: 537 EPLTDIVPLQRVAKDESSVMVQHPMSDVEALGLLKVDFLGLRNLDVIEETLRIVRETTGE 596 Query: 579 NGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALF 638 ++I IPLDD+++ + R +T VFQ ES GM+ +++ ++PD F+D++AL AL+ Sbjct: 597 R----INIREIPLDDEETLKLFARGDTFGVFQFESSGMQRMLQEVRPDRFDDLVALNALY 652 Query: 639 RPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLS 698 RPGP+ + NF KH E + YPD LKP+LEPTYG+ YQEQ+M+I++VL Sbjct: 653 RPGPMD--YIPNFKKGKHDPESVRYPD-----PRLKPILEPTYGVAAYQEQLMEISKVLG 705 Query: 699 GYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNK 758 G+T G AD LR+A+GKKK + +A R F G E+NG+ +A ++++ +EK GY FNK Sbjct: 706 GFTPGEADTLRKAIGKKKKDILATLRDKFMRGCEENGVEPGVARELWEWMEKAGGYSFNK 765 Query: 759 SHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINS 818 SHSA Y+ +++QT +LKAHYP +MAA++++ M+ ++V V E MG+++LPPD+N Sbjct: 766 SHSACYSFLAFQTAYLKAHYPTAYMAALLSSVMNTKDRVPQYVAEARAMGIEVLPPDVNE 825 Query: 819 GLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRV 878 F V D I +G+ A+K VG+ +EAI+ +R +GG FR++FD C R D N+R Sbjct: 826 SGKRFTVVGD-TIRFGLSAVKNVGDNTVEAILASREEGGPFRDIFDFCERVDPSTYNKRT 884 Query: 879 LEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSY 938 LE LI GAFDR G R+A++ +A++ + +A + Q MF + P + E Sbjct: 885 LESLIKCGAFDRTGHSRSAMLAVHTEAVERVSRGRRASSESQFAMFDLAEVAPPRPEVPA 944 Query: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998 P + L+ E+ETLGL+++ HP+ + ++ ++V + L ++ + G V+ AG Sbjct: 945 TPDDP---RRNLEWEKETLGLFVSDHPLRPVMHKLRKHV-DLSLSELDGRQDGAVVCVAG 1000 Query: 999 LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDD 1058 L + RV T++G + + LDD G EV++F + +D I+ V G+V D Sbjct: 1001 LATSVRVSTTRKGETMAVLQLDDTRGMAEVLVFPRVYAGCSAGIREDAIVKVKGRV--DR 1058 Query: 1059 FSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLY 1118 G ++ A EV +++ A + + + + L + G P+ L Sbjct: 1059 KEGIPRIVAMEVEELELAP--GPDPVYLRAAAFEGRPRSLALRAFEVVRRYPGESPLILV 1116 Query: 1119 YQRADARARLRFGATWRVSPSDRLLNDLRGLIGSEQVE 1156 V S L +L+ L+G V Sbjct: 1117 SDGGRQEEV------CTVDDSSDLFAELKQLLGPRAVS 1148 >UniRef50_Q0F0W7 Putative uncharacterized protein n=2 Tax=root RepID=Q0F0W7_9PROT Length = 1169 Score = 1235 bits (3196), Expect = 0.0, Method: Composition-based stats. Identities = 501/1168 (42%), Positives = 699/1168 (59%), Gaps = 30/1168 (2%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M F HL VHSD+S++ K L+ K A L PA+A+TD+ NL G ++FY Sbjct: 1 MRFAPFAHLHVHSDFSLLGSTLKIGDLLHKVAELRQPAVALTDYGNLFGAIEFYSKAMRM 60 Query: 61 GIKPIVGADF--------NVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAA 112 GIKPI+G + + G L +LA NN G++NL L+S +Y G+ Sbjct: 61 GIKPIMGCEVFICEDHTKRISEGPRGPRFPQLVLLARNNHGWKNLLKLVSISYLDGF-YY 119 Query: 113 GPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDR-YFLELI 171 P + + L E +GLI +S G G++ + L RG+ + Y + F + +F+E+ Sbjct: 120 KPRVGKPLLSEHADGLIAISSGWNGEIEQHLQRGDIEGARKVAIAYRDMFHEGCFFIEIQ 179 Query: 172 RTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRP 231 R +E +ELA +P+VA+N+ F++ DF+A + A+ TL+D Sbjct: 180 RQNGSGQEQINELLIELAHELDIPLVASNNAHFLEREDFEAFQAMQALQQNRTLND-DVS 238 Query: 232 RNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF-PTGDMSTED 290 +++P+ Y++S EEM ELF DIPEAL NTV IA RCNV ++ G Y LP F P DM Sbjct: 239 GHFTPEYYLKSYEEMQELFEDIPEALENTVHIANRCNVDLQFGNYQLPDFQPPEDMELSA 298 Query: 291 YLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQW 350 Y+ +++ EGL++R + + + + R YD RL EL VI MGFPGYFLIV +FI W Sbjct: 299 YMRQQSMEGLDDRWPAILAGDPDAV--RETYDARLAFELDVIENMGFPGYFLIVSDFITW 356 Query: 351 SKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEK 410 +K G+PVGPGRGSGAGSLVAY LKITDLDP+++ LLFERFLNPERVSMPDFD+DFCM + Sbjct: 357 AKHQGIPVGPGRGSGAGSLVAYCLKITDLDPIKYGLLFERFLNPERVSMPDFDIDFCMSR 416 Query: 411 RDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMT 470 R++ I +V YG D V+QIITFG+M AKAVIRDVGRVL V+ I+KL+P D MT Sbjct: 417 REEAIRYVTHKYGEDKVAQIITFGSMKAKAVIRDVGRVLPMELAKVNMIAKLVPNDLKMT 476 Query: 471 LAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYC 530 L KA EP+L ++ + D EV L +A++LEG RNAGKHA GV+I ++ D APL+ Sbjct: 477 LEKALVDEPKLAKMVKEDVEVARLFALAKRLEGSHRNAGKHAAGVIIGRRELVDTAPLFK 536 Query: 531 DEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIP 590 + V Q+D ++VE GL+KFDFLGL+TLT+I+ A++++ + + + DI IP Sbjct: 537 VAGEEGKVVQWDMANVEKVGLIKFDFLGLKTLTVIDIAVKLVRQYESGDAAKHFDITTIP 596 Query: 591 LDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDN 650 + D+ +F ++QR +T AVFQ+ES GM+DL+ RL+PDCFED+IALVAL+RPGPL+SGMVD Sbjct: 597 MHDEATFQLMQRGQTGAVFQVESSGMRDLLTRLKPDCFEDIIALVALYRPGPLESGMVDT 656 Query: 651 FIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRR 710 FI+ KHGR+ I YP LK +L+ T G+ILYQEQVMQIAQ+L+G++LG ADMLRR Sbjct: 657 FIECKHGRQAIEYPL-----PQLKTILQETNGVILYQEQVMQIAQLLAGFSLGQADMLRR 711 Query: 711 AMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQ 770 AMGKKK EEMA+QR +F GAEK ++ + A +FDL+EKFAGYGFNKSHSAAYAL+SYQ Sbjct: 712 AMGKKKAEEMAEQRKIFMAGAEKQKVDLDKAEHMFDLMEKFAGYGFNKSHSAAYALISYQ 771 Query: 771 TLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGE 830 T +LKAHYP FMAA M+ DM NT+K+ LV +C MG+ +L P IN + F D Sbjct: 772 TAFLKAHYPRAFMAATMSCDMGNTDKLALLVTDCRNMGIDVLQPHINESDWEFRPEGD-C 830 Query: 831 IVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDR 890 I YG+G IKGVGE + A+I+ R G F D+ R + LN+R+LE +I +GA Sbjct: 831 IRYGLGGIKGVGEAALRAVIDERKTNGEFTSFEDMIMRAPARTLNKRILEAMIRAGALQG 890 Query: 891 LGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVL 950 L PH+ A + LG+ L+ + K A Q+ +F V EPE + + + W L Sbjct: 891 LIPHQRAALEGLGEVLENLSRKRKEFASNQSFLFTV--AEPESADGGFPTLPAWSPGESL 948 Query: 951 DGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKR 1010 ERE LG YLTGHP+ +LK +G L ++ E G I + + R R Sbjct: 949 QAEREVLGFYLTGHPLEAWLKR-TTGLGDCNLSELKEREEGAEIVVPVGISSIRQYQGGR 1007 Query: 1011 GNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREV 1070 G + L+D G+ E++ F+ +LL+ D L+++ +V D + A Sbjct: 1008 GT-MAFVQLEDLHGQAEMVCFSTIYADIAELLQADIPLLIAARV--DKSKDEPVLIAEAA 1064 Query: 1071 MDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRF 1130 + E + + I+ D+ L RL+ + G + + + DA + Sbjct: 1065 ASLAELVPELVTEVRITTASLAWDEITLARLKSL---AQGGPARLSFHVRLPDASLAI-L 1120 Query: 1131 GATWRVSPSDRLLNDLRGLIGSEQVELE 1158 + + + L G E + L+ Sbjct: 1121 QTGPCLRWDEDVKTQLDARFGPESIHLQ 1148 >UniRef50_Q3Z6I2 DNA polymerase III, alpha subunit n=5 Tax=Dehalococcoides RepID=Q3Z6I2_DEHE1 Length = 1170 Score = 1235 bits (3196), Expect = 0.0, Method: Composition-based stats. Identities = 441/1195 (36%), Positives = 653/1195 (54%), Gaps = 70/1195 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F HL VH+++S++DG+ + + LV +A LGM ALAITD + G+ +FY AGIKPI Sbjct: 2 FCHLHVHTEFSLLDGMCRISQLVARAKELGMEALAITDHGTMHGIPRFYKEAKEAGIKPI 61 Query: 66 VGADFNVQCDL------LGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRD 119 +G++F + HL +LA NN GY NL L S+++ G+ P ID++ Sbjct: 62 LGSEFYLAYGDRTAKTAADKNYYHLVLLAKNNKGYHNLIQLSSRSHIEGF-YYKPRIDKE 120 Query: 120 WLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEE 179 L + +EGL+ LS G+V R +L E +Y++ F + Y++E+ R PD E Sbjct: 121 LLEKYSEGLVCLSACPSGEVPRLILENRFDEAREAALWYKKTF-ENYYIEIQRHPMPDLE 179 Query: 180 SYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQY 239 + +A +P+VATND ++D D H++ + I + D KR + Y Sbjct: 180 KINSVLIPMARELDIPLVATNDTHYLDKEDAPYHDLLLCIGTNALVSDEKRMKMEGDYFY 239 Query: 240 MRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTG-DMSTEDYLVKRAKE 298 ++S EEM E + DIP+A+ NT +IA+ CNV++ G LP+ + ++YL E Sbjct: 240 LKSPEEMAEAYQDIPDAIENTAKIAEMCNVSLDFGRLHLPEIDIPAGKTPDEYLADLCYE 299 Query: 299 GLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPV 358 GL +PD + E +RL+ EL VI F YFL+ + I++ K+ G+ Sbjct: 300 GL----PKFYPDASQ------EILDRLKYELDVIKTTEFANYFLVTWDIIRFVKEKGLYY 349 Query: 359 GPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHV 418 G RGS A S+V Y L IT LDP+++ L+FERFLN ER MPD D+DF ++R++VIE+V Sbjct: 350 GV-RGSAASSIVLYCLGITALDPIKYKLVFERFLNIERKEMPDIDMDFQDDRREEVIEYV 408 Query: 419 ADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAE 478 YGRD VSQIITFGT+ AKA +RD GR LG Y VDR++K+IP MTL KA E Sbjct: 409 VGKYGRDHVSQIITFGTLGAKAAVRDAGRALGMAYADVDRVAKVIPFSLHMTLDKAMEES 468 Query: 479 PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEG---K 535 +L ++Y D V+ L+D ARK+EG++R+A HA GVVI+ +TD PL + Sbjct: 469 TELKDMYNQDSVVRNLVDAARKIEGLSRHASTHAAGVVISKDPLTDHVPLQRLSKENNLG 528 Query: 536 HPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKK 595 +TQ+ D+ GL+K DFLGL L I+ A +I + ++ +D AIPLDD K Sbjct: 529 LVMTQYTMEDIAKIGLLKMDFLGLVNLNILGKACAVIKEYTGQD----IDPLAIPLDDVK 584 Query: 596 SFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRK 655 +F++L ET VFQLE GM+ IK L+P F D+ A+VAL+RPGP++ + FI K Sbjct: 585 TFELLAAGETVGVFQLEGTGMRRYIKELKPTVFSDIGAMVALYRPGPMEQ--IPRFIKSK 642 Query: 656 HGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKK 715 HG E I+YP H +L+P+LE TYG+I+YQEQV+ IAQ SGYTLG AD+LR+AMGKK Sbjct: 643 HGLEPITYP-----HPALEPILEETYGVIVYQEQVLFIAQTFSGYTLGQADILRKAMGKK 697 Query: 716 KPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 775 M KQ++ F +GA KNG E+A ++F LVE FAGY FNK+H+ +YAL++YQT +LK Sbjct: 698 IAAVMQKQKANFIDGALKNGYTPEIAEEVFALVEPFAGYAFNKAHATSYALIAYQTAYLK 757 Query: 776 AHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDD----GEI 831 A+YP E++ A + A D TEKVV V E MG+++LPPDIN +F + + +I Sbjct: 758 ANYPVEYITAYLQAFCDVTEKVVTAVTEARHMGIEVLPPDINRSGVNFEIEQNEDGVKKI 817 Query: 832 VYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRL 891 +G+ A+K VG +E I+ R G + + DLC R + LN+RV+E L+ +GA D L Sbjct: 818 RFGLAAVKNVGVAAVEPIVAERKANGEYLSVEDLCRRAEGSSLNKRVMESLVKAGALDSL 877 Query: 892 GPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ-PWPEQVVL 950 G R L+ +L + L A + K + Q MF + ++ S + P + L Sbjct: 878 G-DRGTLLFNLPNILSLAQREQKLKDSNQTTMFDLFGQQSPMPMPSLEMAESPVTTREKL 936 Query: 951 DGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKR 1010 E+E +G++++ HP Y + + + + +T AG+V + RV T+ Sbjct: 937 QWEKELVGIFISEHPFTPYASAAQEVTTAL-CGQIDEELDNQPVTVAGMVASVRVSATRE 995 Query: 1011 GNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREV 1070 G + ++D GR+EV + + L E+ IL+V G+ + + A +V Sbjct: 996 GKPFVMAEIEDLVGRVEVAAWPKVYAATKALWEEGNILLVEGKAVV--RGDRVSIHAEKV 1053 Query: 1071 MDIDEAREKYARGLAISLTDRQIDD-------------------------QLLNRLRQSL 1105 +K A + I+ + +D LN + + L Sbjct: 1054 SRYQPETDKKAAPVFINAPQPKAEDKEPPAPQLQRLVVCIQQTENEGRDIDCLNEVVEIL 1113 Query: 1106 EPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSEQVELEFD 1160 + + G V L + L+ W V L + L L+GS V LE + Sbjct: 1114 KQY-PGETEVRLCVVNHERVFILKMPDIW-VYYCPELKSKLAALVGSANVRLENN 1166 >UniRef50_B0S231 DNA polymerase III alpha subunit n=3 Tax=Clostridiales Family XI. Incertae Sedis RepID=B0S231_FINM2 Length = 1161 Score = 1235 bits (3195), Expect = 0.0, Method: Composition-based stats. Identities = 425/1186 (35%), Positives = 666/1186 (56%), Gaps = 62/1186 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F HL VH++YS++DG + L+ KA L M A+AITD ++ G VKFY IKPI Sbjct: 5 FTHLHVHTEYSLLDGFSPIEKLLDKAKDLQMKAIAITDHGSMFGTVKFYKECKKRNIKPI 64 Query: 66 VGADFNVQCDLLGDELT------HLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRD 119 +G + + HL +LA N GY NL ++S Y G+ P +D++ Sbjct: 65 IGCEIYTTNKDHKIKNPENKFYNHLVLLAKNQQGYSNLMKIVSLGYVEGF-YYKPRVDKN 123 Query: 120 WLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEE 179 L + +EG+I LS G+V SL+R + ++ + + ++LEL ++ Sbjct: 124 TLRKYSEGIIALSACLKGEVQESLIRYGYDKAKDVAKELKDIYGEDFYLELQNHSSREDM 183 Query: 180 SYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQY 239 + ++A+ + +V TNDV +I+ D+ H I + + G T+++ + + + Sbjct: 184 VVMENIPKIAKELDIGLVCTNDVHYIEKEDYKIHNILICLQTGKTIEEDNKMSYIPGEFF 243 Query: 240 MRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKRAKE 298 +RSEE+M +LF + PEA+ NT +IA+ CNV + G LP F D + YL K + Sbjct: 244 LRSEEQMKDLFKEYPEAIENTKKIAEMCNVELEFGHLHLPYFAIPDGFTNSSYLKKLVFD 303 Query: 299 GLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPV 358 GLE+R A +R E ER E EL VI +MG+ YFLIV +FI+++K +PV Sbjct: 304 GLEKRFAND--------ERLQEAKERCEYELSVIEKMGYVDYFLIVWDFIRFAKSQDIPV 355 Query: 359 GPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHV 418 GPGRGS AGS+++Y L+ITD++PL++DL+FERFLNPERVSMPD D+DFC E+R++VI++V Sbjct: 356 GPGRGSAAGSIISYCLEITDINPLDYDLIFERFLNPERVSMPDIDIDFCYERREEVIDYV 415 Query: 419 ADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAE 478 + YG D V+QI+TFGTMAA+ IRDVGRVL + VD +K +P + + K+ E Sbjct: 416 VNKYGEDKVAQIVTFGTMAARNAIRDVGRVLAMDFKTVDDTAKKVPNLLNINIDKSLEIS 475 Query: 479 PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538 P+ + YE + +VK L+D+AR++EG+ R+ HA GVVI+ I ++ PL +++ + Sbjct: 476 PEFRKAYEENRDVKKLVDVARRVEGMPRHTSTHAAGVVISKLPIMEYVPLAINKDA--VI 533 Query: 539 TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598 TQF+ +++E GL+K DFLGLRTLT+I+ ++ I K N ++ + +D K Sbjct: 534 TQFNMTELEELGLLKMDFLGLRTLTVISDCIKYIKK----NKNIDVNFEDMNENDPKVLS 589 Query: 599 MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658 M ++T +FQ ES+GM++ +K L+P F+D+IA ALFRPGP+ + +I KH Sbjct: 590 MFTVAQTLGIFQFESQGMRNFLKELKPTKFDDLIAANALFRPGPM--NEIPTYIHNKHNE 647 Query: 659 EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718 E++ Y L+ +L+PTYG I+YQEQVMQI Q ++G++LG AD LRRAM KKK + Sbjct: 648 EDVEY-----LSPLLEDILKPTYGTIVYQEQVMQIVQKIAGFSLGEADNLRRAMSKKKMK 702 Query: 719 EMAKQRSVF------------AEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 M R F EGA + G+ ++A KI+DL+ FA Y FNKSHSAAY+L Sbjct: 703 VMEDGRKEFIFGKEDENGNILIEGAIRRGVEEDVANKIYDLMIDFAKYAFNKSHSAAYSL 762 Query: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 V+ +T WLK +YP EF+AA++++ M NT ++ ++E R+ ++I PPDIN L F V Sbjct: 763 VAMRTAWLKYYYPVEFLAALISSVMGNTSQISLYIEEARRLEIEISPPDINYSLDKFDV- 821 Query: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCART---DTKKLNRRVLEKLI 883 D I+YG+ AIK VG I+ I +RN+ G F+ D R D +N+R +E LI Sbjct: 822 KDNSIIYGLKAIKNVGTNLIDQTIISRNENGKFKSFRDFVERIYAKDKSAINKRSIESLI 881 Query: 884 MSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQP 943 +GAF LG RA LM + + K GQ+++F + E + + Sbjct: 882 KAGAFSSLGETRATLMLQYQSIIDSVQSGLKNNVPGQSNLFDMFESNEENDRDDFTRREE 941 Query: 944 WPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTE------RGKVITAA 997 + + +L E+E LG+YL+ HP+ Y I +Y D+ GK + Sbjct: 942 FDKSELLRMEKEVLGIYLSDHPLRAYSSIIGQYSNFST-GDLEDDAYNEKNFDGKRVKVV 1000 Query: 998 GLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFD 1057 G++ + TK + +D G +E+++F ++Y ++L +D ILIV G+++ Sbjct: 1001 GIIESINKKFTKNQKIMEFVKFEDLYGTMELIVFPQKYEQYSEILNEDEILIVGGRLNII 1060 Query: 1058 DFSGGLKMTAREVMDID-----EAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGT 1112 + K+ + I E +E+ L + +T + +L++++ L + G Sbjct: 1061 EGED-PKIIVDSIQSIKSISNVEKQEESETKLFLRITKN-MPSYILDKVKPILL-NSKGD 1117 Query: 1113 IPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSEQVELE 1158 ++Y++ D + G +R+S D +++L L+G E V L+ Sbjct: 1118 TQSNIYFE--DKKQNYLLGNEFRISCEDNTIDELVSLLGRENVVLK 1161 >UniRef50_D1C3B9 DNA polymerase III, alpha subunit n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C3B9_SPHTD Length = 1167 Score = 1234 bits (3193), Expect = 0.0, Method: Composition-based stats. Identities = 444/1176 (37%), Positives = 643/1176 (54%), Gaps = 54/1176 (4%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M+ F HL +H+++S++DG+ + + +A GM +AITD + G++ +Y A Sbjct: 1 MTARPFAHLHLHTEFSLLDGMGRIKDYMARAREFGMEHIAITDHGVMYGVIDWYKAARAH 60 Query: 61 GIKPIVGADFNVQCDLLGDE---LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIID 117 + PI+G + + + D HL +LA N GY+NL L S+A G+ P +D Sbjct: 61 DLHPILGIEAYLAPGSIEDREKQSYHLLLLAENERGYRNLLRLASRASLEGF-YYKPRVD 119 Query: 118 RDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRTGRP 176 D L L +G+I S G V + L+G +E F PD +++E+ G Sbjct: 120 LDMLNSLRDGIICTSACLGGPVANNFLQGRDEEAVRLAGILKEMFGPDHFYIEIQDHGIE 179 Query: 177 DEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSP 236 + +ELA LP+VATNDV ++D SD E+ V I TL DPKR R S Sbjct: 180 GQRQTNPQLIELARKLDLPLVATNDVHYVDKSDAPLQELLVCIQTNTTLHDPKRLRMESD 239 Query: 237 QQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGD-MSTEDYLVKR 295 Q Y +S EEM LF ++PEAL NT+ IA+RCNV + G LP + M+ +YL + Sbjct: 240 QLYFKSPEEMWRLFGEVPEALENTIRIAERCNVDLEFGRLHLPDPGIPEGMTPHEYLCQL 299 Query: 296 AKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNG 355 +G+ R + E RLE EL VI + GF Y LIV +F ++++ Sbjct: 300 CWDGVRRRYPEV----------TEEVRRRLEYELDVIQETGFSSYMLIVRDFAEFARQRR 349 Query: 356 VPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVI 415 + G RGS A S+V Y L ITD+DPL L+FERFLN ER MPD D+DF +R +VI Sbjct: 350 ISFGV-RGSAAASIVLYTLGITDIDPLANRLVFERFLNRERREMPDIDMDFADNRRAEVI 408 Query: 416 EHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAF 475 ++VA YG D V+QIITFGTM AKA IRD GR +G Y VDRI++LIP +TL KA Sbjct: 409 DYVASKYGHDRVAQIITFGTMGAKAAIRDTGRAMGWAYNDVDRIARLIPSTLNITLDKAL 468 Query: 476 EAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLY---CDE 532 + P+L ++YE D + LID A++LEG++R+AG HA GVVIA + + PL E Sbjct: 469 QESPELRQLYETDPACRELIDNAKRLEGISRHAGTHAAGVVIAADPLVEHLPLQRPARAE 528 Query: 533 EGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLD 592 EG P TQF V GL+K DFLGL LTI+ A+E+I + +D IP Sbjct: 529 EGALPTTQFPMETVAEIGLLKMDFLGLANLTILGEAVELIRQTTGVE----IDPKKIPDG 584 Query: 593 DKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFI 652 D+K++ ML + ET VFQLES GM+ I+ L+P ++ A+VAL+RPGP+Q + + Sbjct: 585 DEKTYAMLSQGETFGVFQLESAGMRRYIRELRPSSIAELAAMVALYRPGPMQH--IPTYC 642 Query: 653 DRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAM 712 KHG E I YP H L +L+ TYG+I+YQ+QV+ IA+ +GYTLG AD++R+AM Sbjct: 643 RAKHGLEPIRYP-----HPDLAEILDETYGVIVYQDQVLLIARKFAGYTLGEADIMRKAM 697 Query: 713 GKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTL 772 GKK PE M +R F GA++ G +AE A +F+L+E FAGY FNK+H+ YA +SYQT Sbjct: 698 GKKIPEVMKAERERFLRGAQEKGYSAEDAQNVFNLIEPFAGYAFNKAHAVCYATISYQTS 757 Query: 773 WLKAHYPAEFMAAVMTADMDN----TEKVVGLVDECWRMGLKILPPDINSGLYHFHVN-- 826 +LKA+YPAE+M AV+ + T++V V EC ++G+ +LPPDIN F + Sbjct: 758 YLKANYPAEYMTAVLRGAPSHPSGATQRVAAAVAECQKLGIPVLPPDINKSGVDFEIEIL 817 Query: 827 DDG--EIVYGIGAIKGVGEGPIEAIIEARN--KGGYFRELFDLCARTDTKKLNRRVLEKL 882 +DG I +G+ +K VGE +E+I+ AR G F C D +NRRV E L Sbjct: 818 EDGTKAIRFGLAIVKNVGEAAVESIVAARKSLPGERFESFEQFCDTVDWTVVNRRVAESL 877 Query: 883 IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYA-SC 941 I GA D LG RA L+ L A+ AA +A GQ D+F + + Sbjct: 878 IKCGALDSLG-DRATLLAVLEQAISAAQSRQRAAKRGQIDLFSAAPVAAPALALAMPDDV 936 Query: 942 QPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVV 1001 P +L E+E LGLYL+ HP+N + I R G VRL ++ G+ I A ++ Sbjct: 937 PEIPRATLLAWEKELLGLYLSSHPLNDLVPLI-RDGGYVRLAEIDEETVGQQIEAIVMIT 995 Query: 1002 AARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSG 1061 R + TK + IC L+D++G +E+++F D ++ + L D I+ V+ +V D + Sbjct: 996 GMRKLTTKTNRVMAICQLEDQTGAIEMVVFPDLYEQAGEHLVVDSIVRVAARV--DQRND 1053 Query: 1062 GLKMTAREV--MDIDEAREKYARGLAISLTDR---QIDDQLLNRLRQSLEPHRSGTIPVH 1116 +++ A V + I+E + R + + L D D + +NR+R+ + G V Sbjct: 1054 RIQLVADRVGPVTIEEPKPVVVREVHVRLPDTGNVTADVETMNRVRELFDQF-PGDDGVI 1112 Query: 1117 LYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGS 1152 L+ +R A+ + + L ++G Sbjct: 1113 LHVPARGRTVLMR--ASLSIDWCPDVERALEEMLGP 1146 >UniRef50_Q6FAL5 DNA polymerase III, alpha chain n=16 Tax=Acinetobacter RepID=Q6FAL5_ACIAD Length = 1187 Score = 1234 bits (3192), Expect = 0.0, Method: Composition-based stats. Identities = 558/1169 (47%), Positives = 775/1169 (66%), Gaps = 39/1169 (3%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 +FVHL +H+++S+ + + + L+K A MPALA+TD +NL VKFY + GIKP Sbjct: 2 QFVHLGIHTEFSITESIVRIPDLIKAAVQDDMPALALTDLSNLHAAVKFYTSCLKKGIKP 61 Query: 65 IVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL 124 I+G+ + D +T+LA N G++ LT ++S+ + G + P + ++W++E Sbjct: 62 ILGSVVRL-----NDPEHRITLLAMTNDGWKGLTEIVSRGHIEGQQLSIPCVQKEWILEQ 116 Query: 125 NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHA 184 ++ +I+L G + DVG+ L N + + ++E F +R ++ L RT R EE Y+ Sbjct: 117 HQDIIVLLG-QHSDVGKMLCSSNPQKAEPLLQAWQEKFGNRVYIALTRTQRAGEEDYMVE 175 Query: 185 AVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEE 244 AV+LA + VVA NDV FI+ DFDAHE RV I DG+ L D +RPR YS +QY ++ Sbjct: 176 AVKLAAKYNIGVVAHNDVHFIERDDFDAHEARVCIADGYVLADHRRPRIYSSEQYFKTAS 235 Query: 245 EMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKRAKEGLEER 303 EM ELF+DIP A+ NT IA+RCNV+++LG YFLP +P D + + Y +KEGLEER Sbjct: 236 EMEELFSDIPSAIENTYYIAQRCNVSLQLGTYFLPDYPIPDGFTIDTYFEHLSKEGLEER 295 Query: 304 LAFLFP---DEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360 L L+P +++ + R YDER+E E+ +I +MGFPGYFLIVM+FIQW+K NGVPVGP Sbjct: 296 LNHLYPIETRDQDWPEIRKPYDERIEYEVGIILKMGFPGYFLIVMDFIQWAKSNGVPVGP 355 Query: 361 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420 GRGSGAGSLVAY+LKITDLDPL +DLLFERFLNPERVSMPDFDVDFC+ RD+VI++V+ Sbjct: 356 GRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDFCIAGRDRVIDYVSR 415 Query: 421 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP-GMTLAKAFEAEP 479 YGR+AVSQI TFGTMAAK IRDV RVLG YG DRISK++P P G+ L +A E EP Sbjct: 416 TYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTKPLGVDLKQAIEMEP 475 Query: 480 QLPEIY-----EADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEG 534 QL +I +++ + +MA KLEG+TRN GKHAGGVVIAP KITD++ + CD +G Sbjct: 476 QLKDIVTNPSNPDNDDAAEIWEMALKLEGITRNTGKHAGGVVIAPGKITDYSAVLCDADG 535 Query: 535 KHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDK 594 + V Q+DK DVE AGLVKFDFLGLR LT+I A++ INKR E PLDIA +PLDDK Sbjct: 536 TNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAVQNINKR--IQSEIPLDIANVPLDDK 593 Query: 595 KSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDR 654 ++ + + TTAVFQ ES GMK ++K +P FE++IA V+L+RPGP+ ++ +FI R Sbjct: 594 DAYLVFADANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRPGPMD--LIPDFIHR 651 Query: 655 KHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK 714 HG E ++ H L+ VLEPTYGI++YQEQVMQ AQ +GYTLGGAD+LRRAMGK Sbjct: 652 MHGGE------FEYLHPLLESVLEPTYGIMVYQEQVMQAAQFCAGYTLGGADLLRRAMGK 705 Query: 715 KKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWL 774 KKPEEM KQR +F +GA + I+ A IFD +EKFAGYGFNKSH+AAYALV+Y T WL Sbjct: 706 KKPEEMVKQRQIFIKGAAEKEIDEATANHIFDYMEKFAGYGFNKSHAAAYALVAYHTAWL 765 Query: 775 KAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYG 834 KAHYPAEFMAAV++++M NT+ +V L+D+C L++LPP +N LYHFH +D+ IVYG Sbjct: 766 KAHYPAEFMAAVLSSEMQNTDSIVFLIDDCRNNALEVLPPSVNMSLYHFHASDERTIVYG 825 Query: 835 IGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPH 894 +GAIKGVGE ++++I++R K G + +LFD C R D KK+N+R LE LI +GA D L Sbjct: 826 LGAIKGVGEQAMQSVIDSRIKNGPYTDLFDFCHRIDLKKINKRTLEALIRAGALDCLQIE 885 Query: 895 RAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGER 954 R++LM L +A++AA+Q + G D+FG + E + +PW ++V L GE+ Sbjct: 886 RSSLMAQLPEAVQAAEQARQNRETGIMDLFGEVE---EVQRKPAKPVKPWSDEVRLKGEK 942 Query: 955 ETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRI 1014 +TLGLYLTGHPI+ Y E++ ++ +L ++ PT RG AGLV+ NR+ Sbjct: 943 DTLGLYLTGHPIDVYRPELKSFIPA-KLNEVTPTRRGVTTVFAGLVLDVANFP----NRM 997 Query: 1015 GICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDID 1074 + TLDD + R+EV + +++ ++ ++++++ G++ + + ++ Sbjct: 998 -VITLDDGTARIEVSCNHERFQRFKDIVVVEQVVVIEGEIYEREGFDRPMARLSKAFSLN 1056 Query: 1075 EAREKYARGLAISLTDRQIDDQLLNRLRQSLEPH----RSGTIPVHLYYQRADARARLRF 1130 E R+K A + I + QI L + L+ + P IPV L ++ A A + Sbjct: 1057 EIRQKRANHIRIQPAEEQISKTLAHDLQNIILPFCNVDMCQHIPVMLTLEQPYATAEVHL 1116 Query: 1131 GATWRVSPSDRLLNDLRGLIGSEQVELEF 1159 G W+V+P D LL LR G + + +E+ Sbjct: 1117 GQNWKVAPLDELLIKLRDYFGKDAIYIEY 1145 >UniRef50_B1C7S2 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C7S2_9FIRM Length = 1215 Score = 1233 bits (3191), Expect = 0.0, Method: Composition-based stats. Identities = 434/1246 (34%), Positives = 702/1246 (56%), Gaps = 119/1246 (9%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS P F HL VH++YS++DG K L K +GM ++AITD N+ G+++FY A Sbjct: 1 MSIP-FTHLHVHTEYSLLDGFCKIKELPKLVKDMGMDSIAITDHGNMFGVIEFYRACRKE 59 Query: 61 GIKPIVGADFNVQCDLL-------GDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 GIKP++G + + + H + A N GY+NL ++S AY G+ Sbjct: 60 GIKPVLGCEIYMTMGDRKGRDPMNDKQSFHFILFAENEIGYKNLMKVVSIAYTEGF-YYK 118 Query: 114 PIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIR 172 P D D L + +EG+I S G + R + G + + + + D +FLE+ Sbjct: 119 PRADFDLLEKYSEGIIATSACIGGIIPRKINSGEIEEAKKYLERFINIYGKDNFFLEIQD 178 Query: 173 TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 G +E++ +++A+ G+ ++ATND ++ SD +AH++ + + L D R R Sbjct: 179 HGLEEEKTANEELIKMAKEYGVGLIATNDSHYLRKSDSEAHDVLLCVQTASNLSDENRMR 238 Query: 233 NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGD-MSTEDY 291 + + Y+++ EEM +LF PEA+ NT +IA+RCNV + G Y LP FP + M+++ Y Sbjct: 239 FPNDEFYIKTPEEMSDLFKYCPEAIENTHKIAERCNVEIEFGHYHLPVFPLPEGMTSQQY 298 Query: 292 LVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWS 351 L K +GL ++ + E ERLE EL VIN MGF YFLIV +FI +S Sbjct: 299 LKKLCMDGLYKKYDNV----------TKELTERLEYELGVINDMGFNDYFLIVWDFINYS 348 Query: 352 KDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKR 411 + + +PVGPGRGS AGS+V+Y L IT +DP+++ L+FERFLN ERVSMPD D+DFC EKR Sbjct: 349 RTHDIPVGPGRGSAAGSIVSYTLDITQIDPIKYALIFERFLNNERVSMPDIDIDFCYEKR 408 Query: 412 DQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL 471 + IE+V + YG D VSQI+TFGT+ KA ++D+ R +G + ++I+KLIP + +T+ Sbjct: 409 HEAIEYVIEKYGFDNVSQIVTFGTLKPKAAVKDIARSMGISFDQSNKIAKLIPDEAKITI 468 Query: 472 AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCD 531 KA P+L ++Y+ D +K L+D A+ +EG+ R++ HA GV+I+ ++D+ PLY + Sbjct: 469 EKAIAMNPELHQMYDEDPTIKKLLDTAKAVEGMPRHSSTHAAGVIISDRAVSDYVPLYLN 528 Query: 532 EEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPL 591 ++ QF+ + VE GL+K DFLGL+ LT+I L+ I + + +DI I L Sbjct: 529 KDS--IAAQFNMTTVEELGLLKMDFLGLKNLTVIKHTLDNIKLSKGID----VDIDNISL 582 Query: 592 DDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNF 651 D+ FD + R +T VFQL S GM+ ++RL+P+ FED+IA ++L+RPGP+ M+ + Sbjct: 583 TDQNVFDTISRGDTIGVFQLASPGMQSFMQRLKPNTFEDIIAGISLYRPGPMD--MIPTY 640 Query: 652 IDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRA 711 ID KH ISY H SL+P+L TYGII+YQEQVMQI + L+GY++G +D++RRA Sbjct: 641 IDNKHNPANISY-----LHPSLEPILNVTYGIIIYQEQVMQIVRDLAGYSMGRSDLIRRA 695 Query: 712 MGKKKPEEMAKQRSVF----------------AEGAEKNGINAELAMKIFDLVEKFAGYG 755 MGKKK E +AK+R +F G GI+ + +I+DL+EKFA YG Sbjct: 696 MGKKKHEVIAKEREIFLHGNEEAFNKGEDKEKVHGCVAIGIDEKTGNEIYDLMEKFASYG 755 Query: 756 FNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPD 815 FNKSH+AAY ++SYQT +LK +YPAEFMAA++T + + ++++ ++ G+K+LPPD Sbjct: 756 FNKSHAAAYGVISYQTAYLKTYYPAEFMAALITVYIGSDDRML-YMNHLKEKGIKLLPPD 814 Query: 816 INSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLN 875 +N F V D+G + +G+ A+KG+GE IE II+AR + G F D + + LN Sbjct: 815 VNKSYSRFTV-DNGSVRFGLLALKGLGESAIEEIIQAREEKGDFTSFPDFVNKIEFNSLN 873 Query: 876 RRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLA-EEPEQI 934 ++ +E LI+SGAFD LG +R L D L + K GQ + +L+ EE EQI Sbjct: 874 KKGVESLILSGAFDSLGNNRRELYCVYEDFLNDTLRQRKQNIAGQTTLLEMLSQEENEQI 933 Query: 935 EQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGK-- 992 E + + + + L E+E +G+Y++GHP+ ++ +++ +Y ++L +++ K Sbjct: 934 EMTIPTMAEFETKEKLKFEKEVMGMYISGHPLAEHEEDLNKYTS-MQLYEVYDRYGNKNS 992 Query: 993 -------------------------VITAAGLVVAARVMVTKR-GNRIGICTLDDRSGRL 1026 +IT GLV +V+ TK+ ++ T++D + + Sbjct: 993 EEEEEAEPQPPVNNKYNKFNKNKRELITIGGLVTYVKVIYTKKDNKQMAFMTVEDLTSDM 1052 Query: 1027 EVMLFTDALDKYQQLLEKDRILIVSGQVSF--DDFSGGLKMTAREVMDIDEAREKYA--- 1081 E+++F ++Y+ +L++D LI+ GQVS +D + + A ++ D+++ R + Sbjct: 1053 EIVVFPRTFEEYKDILKEDNKLIIKGQVSVKEEDEEKSVSIIADKIWDMEDKRSRPPAIR 1112 Query: 1082 --------------------------RGLA---ISLTDRQIDDQLLNRLRQSLEPHRSGT 1112 + + ++L +I+++ ++ +R+ ++ G Sbjct: 1113 KKDVIQPRIKKVQEKAVSPEIKKANSKKIIGNSLTLVLNRINERTMSDIRKLFVKYK-GD 1171 Query: 1113 IPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSEQVELE 1158 V L+ ++ + V L+++L LIG + ++ Sbjct: 1172 KKVVLF--SPVSKKSYVADKSMWVQLEIGLIDELAELIGKNNIIIK 1215 >UniRef50_Q3AVK2 DNA polymerase III, alpha subunit n=11 Tax=Cyanobacteria RepID=Q3AVK2_SYNS9 Length = 1172 Score = 1231 bits (3185), Expect = 0.0, Method: Composition-based stats. Identities = 440/1181 (37%), Positives = 669/1181 (56%), Gaps = 63/1181 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FV L HSDYS++DG ++ +V++A LGMPA+A+TD + G ++ G +KPI Sbjct: 3 FVPLHNHSDYSLLDGASQLPSMVERAKELGMPAIALTDHGVMYGAIELLKLCKGTDLKPI 62 Query: 66 VGADFNV------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG----PI 115 +G + V ++ HL VLA N GY+NL L S ++ RG G Sbjct: 63 IGNEMYVINGSIDDPQPKKEKRYHLVVLAKNAIGYRNLVKLTSISHLRGMRGRGIFSRAC 122 Query: 116 IDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGR 175 +D+D L +EGLI+ + G++ +++LRG + + +Y++ F + ++LE+ G Sbjct: 123 VDKDLLQRHSEGLIIATACLGGEIPQAILRGRPEVARDVARWYQDVFGEDFYLEIQDHGS 182 Query: 176 PDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYS 235 P++ V++AE + +VATND ++ D +AH+ + + G + D KR R Y+ Sbjct: 183 PEDRIVNSEIVKIAEELDIQLVATNDAHYLTKQDVEAHDALLCVLTGKLISDEKRLR-YT 241 Query: 236 PQQYMRSEEEMCELFADI------PEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTE 289 +Y+++EEEM LF D +A+ NT ++A++ LG+Y +P+FP D T Sbjct: 242 GTEYIKTEEEMGRLFTDHLDPDVVQKAITNTAKVAEKVEDYDILGKYQMPRFPIPDGHTA 301 Query: 290 -DYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFI 348 YL + +GL +RL D Y +R+ EL+++ QMGFP YFL+V ++I Sbjct: 302 VTYLREVTLQGLRDRLELKSDDPIAE-----NYADRMSHELEIMEQMGFPTYFLVVWDYI 356 Query: 349 QWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCM 408 +++++ +PVGPGRGS AGSLVAYAL IT++DP+ LLFERFLNPER SMPD D DFC+ Sbjct: 357 RFAREQNIPVGPGRGSAAGSLVAYALGITNIDPVSNGLLFERFLNPERKSMPDIDTDFCI 416 Query: 409 EKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG 468 E+R +VI++V + YG D V+QIITF M +KAV++DV RVL PYG DR++KLIP G Sbjct: 417 ERRCEVIDYVTERYGDDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKLIPVVRG 476 Query: 469 MTLA-KAF----EAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKIT 523 KA P+ E Y+ D VK +DMA ++EG + G HA GVVIA + Sbjct: 477 KPAKLKAMIGDESPNPEFREKYQGDPVVKRWVDMAMRIEGTNKTFGVHAAGVVIAADPLD 536 Query: 524 DFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPP 583 PL + +G+ +TQ+ DVE GL+K DFLGL+ LT+I+ LE++ Sbjct: 537 QLVPLQRNNDGQ-VITQYFMEDVESMGLLKMDFLGLKNLTMIDKTLELVEVSSGTR---- 591 Query: 584 LDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPL 643 +D +P D +F +L R + +FQLES GM+ +++ L+P ED+ +++AL+RPGPL Sbjct: 592 IDPDKLPPQDADTFALLARGDLEGIFQLESSGMRQIVRDLKPSSLEDISSILALYRPGPL 651 Query: 644 QSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLG 703 +G++ FI+RKHGRE I + HE L+P+L TYGI++YQEQ+M+IAQ L+GY+LG Sbjct: 652 DAGLIPKFINRKHGREAIDFA-----HEILEPILSETYGIMVYQEQIMRIAQDLAGYSLG 706 Query: 704 GADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAA 763 AD+LRRAMGKKK EM K R +F EGA+K G++ +++ ++FD + FA Y FNKSHS A Sbjct: 707 QADLLRRAMGKKKVSEMQKHRGIFVEGAKKRGVDVKVSDELFDQMVLFAEYCFNKSHSTA 766 Query: 764 YALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHF 823 Y V+YQT +LKAHYP +MAA++T + +KV + C MG++++PPD+N+ L F Sbjct: 767 YGAVTYQTAYLKAHYPVAYMAALLTVNAGAADKVQRYISNCNAMGIEVMPPDLNASLIDF 826 Query: 824 HVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLI 883 N D I++G+ A++ +G+G I +IE+R G FR L DLC R + LNRR LE LI Sbjct: 827 TPNGD-RILFGLSAVRNLGDGAIRRLIESRENDGPFRSLADLCDRLPSSVLNRRGLESLI 885 Query: 884 MSGAFDRLGP--HRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQ-------I 934 GA D + P +RA LM L L A AK GQ ++F ++A E + Sbjct: 886 HCGAMDAMDPNANRAQLMADLDLLLDWASSRAKDRDSGQGNLFDLMAAPAEDDGPTDLSM 945 Query: 935 EQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVI 994 A +P L E++ +G YL+ HP+ Q L R + + L + + Sbjct: 946 APKAAPVPDYPPSEKLRLEKDLVGFYLSDHPLKQ-LTPSSRLLAPIGLGSLEEQPDKAKV 1004 Query: 995 TAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQV 1054 +A ++ R + T++G+R+ I L+D +G E ++F + + L + L+V V Sbjct: 1005 SAITMITELRQVTTRKGDRMAILQLEDLTGSCEAVVFPKSYARLADHLMAEARLLVWAGV 1064 Query: 1055 SFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDD-QLLNRLRQSLEPHRSG-- 1111 D +++ + ID+ L + L Q +D + ++LR+ L HR Sbjct: 1065 --DRRDERVQLIIDDCRAIDDLTL-----LLVQLPSDQANDIAIQHKLRECLTQHRPERD 1117 Query: 1112 ----TIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRG 1148 +PV D+ +R GA + V + L Sbjct: 1118 ELGVKVPVVAEVCLGDSVRYVRLGAQFCVRDPIAAVQALND 1158 >UniRef50_A5EV47 DNA polymerase III, alpha subunit n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EV47_DICNV Length = 1175 Score = 1230 bits (3184), Expect = 0.0, Method: Composition-based stats. Identities = 554/1183 (46%), Positives = 761/1183 (64%), Gaps = 40/1183 (3%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 +V L VHS+YS+ D L + +V A + ++A+TD NL +KFY A IKP Sbjct: 3 DYVPLHVHSEYSLNDSLLRIHDIVAFAQTHDLTSIALTDRNNLYAAIKFYQCARRAKIKP 62 Query: 65 IVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-IE 123 I+G D +++ ++ ++ L +LA N G+++L L+S AY +D+ L E Sbjct: 63 ILGCDLSIRDEVG--QIHQLILLAQNALGFRHLCELVSFAYTHDQTPNEIAVDKTRLTAE 120 Query: 124 LNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLH 183 +GLI LSGG GDVG+++ RG+ +C +++ F +R++L++ R G+ + + Sbjct: 121 QCQGLIALSGGEEGDVGKAIARGDRKHALQCATHWQKIFSNRFYLQIARFGQTEPPLFSQ 180 Query: 184 AAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSE 243 E+ + + VATN F ++DFD HE RV I G T+D+PKR R ++PQ ++R+ Sbjct: 181 NLAEIGQKLRIAAVATNLACFKTAADFDYHEARVCIASGDTIDNPKRVRRFTPQHHLRAP 240 Query: 244 EEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGD-MSTEDYLVKRAKEGLEE 302 +++ ++FAD P+ L NT IA+RCNV + LG+++LP FP + + E YLV+ A+ GLEE Sbjct: 241 QDLAQIFADAPQLLVNTELIAQRCNVVLSLGKHYLPDFPLPECIDIERYLVQEAERGLEE 300 Query: 303 RLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGR 362 RL LFPD + R ++ Y ERL+TEL VIN+M FPGYFLIV +FIQW+K++ VPVGPGR Sbjct: 301 RLVQLFPDPQIRAEKTALYQERLQTELAVINRMQFPGYFLIVADFIQWAKNHDVPVGPGR 360 Query: 363 GSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMY 422 GSGAGSLVA+ LKIT+LDP+ +DLLFERFLNPERVSMPDFDVDFCM KRD VI +VAD Y Sbjct: 361 GSGAGSLVAFCLKITELDPMAYDLLFERFLNPERVSMPDFDVDFCMNKRDDVIRYVADKY 420 Query: 423 GRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEA----- 477 G D VSQI T GTMAAKAVIRDVGRVL PY VD+ISK++P G+TL A Sbjct: 421 GHDKVSQIATHGTMAAKAVIRDVGRVLSLPYPVVDKISKMVPNTLGVTLPDALGKTEKSR 480 Query: 478 ------EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCD 531 +L + YE DEEVK LID+A LEG+ RN GKHAGGVVIAPT +TDF+ LYC+ Sbjct: 481 THPEFFSAELTKRYEEDEEVKYLIDIALPLEGLARNVGKHAGGVVIAPTTLTDFSALYCE 540 Query: 532 EEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPL 591 G VTQFDK D+E AGLVKFDFLGLRTLT+I+WA++ +N+ N LDI I Sbjct: 541 HAGSALVTQFDKEDIEAAGLVKFDFLGLRTLTVIDWAVQNVNQYAPAN--EKLDIRQIRD 598 Query: 592 DDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNF 651 DD+ +F +L+ +TTAVFQLES GMK+LI +LQPD FED+IALVALFRPGPLQSGMVD+F Sbjct: 599 DDEATFQLLKSGKTTAVFQLESSGMKNLIAKLQPDNFEDLIALVALFRPGPLQSGMVDDF 658 Query: 652 IDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRA 711 I+RKHGR ++ YP H +L +L+ TYG+++YQEQVMQ+AQ+L+ Y+LG AD+LRRA Sbjct: 659 INRKHGRAKVVYP-----HPALAEILKNTYGVMVYQEQVMQVAQILAKYSLGEADLLRRA 713 Query: 712 MGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQT 771 MGKKKPEEMAKQ+ F A G++ ++A+ IFDL+ KFA YGFNKSHSAAYAL+SYQT Sbjct: 714 MGKKKPEEMAKQKGTFVARASAGGVDEQVAIDIFDLMAKFAEYGFNKSHSAAYALLSYQT 773 Query: 772 LWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEI 831 WLKAHYPA FMAAV+T++MD TEK+V L+DEC MGL+ILPP IN Y F +N GEI Sbjct: 774 AWLKAHYPAAFMAAVLTSEMDKTEKIVLLIDECHEMGLRILPPSINHSAYDFTINQQGEI 833 Query: 832 VYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRL 891 ++G+GAIKGVG+ IE I+ R +GG F+ L DLC R D K L R+ LE LI +GAFD + Sbjct: 834 LFGLGAIKGVGQAVIEQILAERRRGGAFQSLTDLCQRLDLKTLKRKTLETLIYAGAFDLI 893 Query: 892 GPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLD 951 +R AL L ALK A+Q+ + + Q +MF +L + + W Q L Sbjct: 894 EKNRGALFAVLPQALKLAEQYHQDKKNRQTNMFSLLDAAHCEAHLALNPENSWQPQQQLM 953 Query: 952 GERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKV--------ITAAGLVVAA 1003 E+ LGL+L+GHP Q E+ R + + ++ K GL+V Sbjct: 954 WEKSVLGLFLSGHP-AQVAAEMIRPICPKNIAEIQHELNQKTPHQGEYHFFYLGGLLVDK 1012 Query: 1004 RVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILI--VSGQVSFDDFSG 1061 R + +K+G T+DD SG++E+ + + L LE+D ++I + + ++ S Sbjct: 1013 RNITSKKGKNFCFITIDDCSGKIEIAVPEELLQTENAALERDTLIIAQIKARFVVNEQSE 1072 Query: 1062 GLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRL---RQSLEPHRSGTIPVH-- 1116 + T + +D+AR + A + I + Q LN L R++ + + + ++ Sbjct: 1073 NWRYTLAHIYTVDDARYQLATDVKIESEINALTPQFLNALASWRRADDDESTAGVTLYFA 1132 Query: 1117 LYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSEQVELEF 1159 L ++ A +R G +R + + DL GS+ + + + Sbjct: 1133 LRLEQEAVAASIRLGGRYRFDRT--IFTDLAHHFGSQNIHMHY 1173 >UniRef50_D2R3M9 DNA polymerase III, alpha subunit n=4 Tax=Planctomycetaceae RepID=D2R3M9_9PLAN Length = 1192 Score = 1229 bits (3181), Expect = 0.0, Method: Composition-based stats. Identities = 421/1184 (35%), Positives = 658/1184 (55%), Gaps = 43/1184 (3%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS+ +FVHL HS YS++DG + L+K+A GM ALA+TD NL G ++FY Sbjct: 1 MSDRKFVHLHCHSHYSLLDGASSVPKLLKRAKEHGMSALALTDHGNLHGALEFYNKAKAL 60 Query: 61 GIKPIVGADFNVQCDLLGDEL---------THLTVLAANNTGYQNLTLLISKAYQRGYGA 111 GI PI+G + + ++ HLT+LA N G++NL L S A G+ Sbjct: 61 GINPIIGYEAYIAPGSRFEKKDAANSKEASYHLTLLAQNRQGFKNLIKLASAASLEGF-Y 119 Query: 112 AGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGN-----SALVDECVAFYEEHFPDRY 166 P ID++ L +EG+I LSG + ++LRG+ E ++ + F DRY Sbjct: 120 YKPRIDKEILQAHSEGIICLSGCVSSEFSNAVLRGHGGDKELKDAQEIAGWFHKVFGDRY 179 Query: 167 FLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLD 226 FLE++ G + L AV++A+ GLP+VAT+D + + D +A ++ + ++ G Sbjct: 180 FLEIMNNGIDIQRFQLEGAVDVAKKMGLPLVATSDAHYAYAEDAEAQDVLLCVNTGKFRT 239 Query: 227 DPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFP-TGD 285 D R + + Y+RS EEM E F + +A+A + EIA ++ + LG+ P +P + Sbjct: 240 DTNRMKMENGSFYLRSAEEMYEHFHGLEDAVARSQEIADSVHIDLELGKRHFPVYPIPPE 299 Query: 286 MSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVM 345 + EDYL + +GL+ER A + + RLE EL VIN++GFP YFLIV Sbjct: 300 KTAEDYLRELCVQGLKERYAGD-EEMLPGGELSEVVVARLERELNVINKLGFPNYFLIVW 358 Query: 346 EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405 +F++ +++ VP RGSG G+LV +AL ++ + P+++DLLFERFL+ R PD D+D Sbjct: 359 DFVRHAREQDVP-ATARGSGVGALVCFALYLSHVCPIKYDLLFERFLDLNRKEAPDIDID 417 Query: 406 FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465 FC ++R +I +V D YG V+QI TFGT+AA+A I+DVGRVLG P V++++ ++P Sbjct: 418 FCKDRRGDIIRYVKDKYGESNVAQIGTFGTLAARAAIKDVGRVLGIPMERVNKVTAMVPD 477 Query: 466 DPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDF 525 + + L+ A E +L +Y D +V+ ++D+A ++EG+ RN G HA VVIA +T++ Sbjct: 478 ELHIHLSDALEKSDELKAVYNGDPDVREMLDLAMRIEGLARNVGTHAAAVVIADKPLTEY 537 Query: 526 APLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLD 585 PL +TQ+ DVE AGL+K DFLGLR LTI++ A+E+I + K +D Sbjct: 538 VPLGRVGGKSDIITQWSMGDVEAAGLLKMDFLGLRNLTILSKAVEIIQQTTGKR----VD 593 Query: 586 IAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQS 645 PLDDK++F +LQR ET +FQLES G++DL+++++PD F D+IA AL+RPGPL+ Sbjct: 594 PYKFPLDDKRTFALLQRGETKGIFQLESGGIRDLLQKMKPDHFRDIIATNALYRPGPLEG 653 Query: 646 GMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGA 705 GMV +++ KHGR++ Y H + +L T G+++YQEQVM+I L G L + Sbjct: 654 GMVADYVAVKHGRKQAEY-----IHPVCEKILSETNGVMVYQEQVMRILNELGGIELAAS 708 Query: 706 DMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYA 765 + +A+ KKK + + K + F +GA + GI + A ++L+ KFAGYGFNKSHS AYA Sbjct: 709 YTVIKAISKKKEDLINKNKVQFLKGAVEKGITEKQADDFWNLIIKFAGYGFNKSHSTAYA 768 Query: 766 LVSYQTLWLKAHYPAEFMAAVMTADMDN-----TEKVVGLVDECWRMGLKILPPDINSGL 820 L++Y T +LKAHYP EFMAA+++ D+ + +V +++C RMG+ + PP++N Sbjct: 769 LIAYMTAYLKAHYPVEFMAALLSGDIQGRNFKTKDSLVEHLEDCTRMGITVQPPNVNESN 828 Query: 821 YHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLE 880 F V DG+I++G+ AIKG G E+I+ AR KGG FR+LFD C R D ++ +E Sbjct: 829 VDFAV-KDGKILFGLSAIKGCGGSAGESIVAARTKGGPFRDLFDFCERVDATGSSKGTIE 887 Query: 881 KLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQS--Y 938 LI +GAFD G R+ + A+++ A GQ ++FG EE +S Sbjct: 888 TLIKAGAFDCFGARRSQQFAIVERAIQSGQSVAADRKSGQKNLFGAFEEEEPSKAKSTTL 947 Query: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998 + + E+E LG YL+ HP++++ + + Y D+ P + G Sbjct: 948 PDVPELASKEMATQEKEVLGFYLSSHPLDEHKRTLATYRSHTTA-DIGPIPDRSEVILGG 1006 Query: 999 LVVAARVMVTKRGN-----RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQ 1053 +V A ++ TK R + L+D G + +L+ D + Q+++ D IL+V G Sbjct: 1007 MVSAIKLSNTKNPKPGAPSRYVMFDLEDTEGTIRCILWPDGYAEMGQMVQPDAILMVRGA 1066 Query: 1054 VSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTI 1113 + + E+M +D+ +Y GL + + R D L ++R+ G Sbjct: 1067 ID-RRGGEEANLVINELMPLDQLSTRYTSGLVVRVDTRDQPDDCLLKIREI-TRGYPGDK 1124 Query: 1114 PVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSEQVEL 1157 + L DA ++ + L L L+G +L Sbjct: 1125 ELQLVLVLDDASRVHMRAHKMKIDVTPELRTRLDDLLGPGNFQL 1168 >UniRef50_D1Y4Y5 DNA polymerase III, alpha subunit n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y4Y5_9BACT Length = 1155 Score = 1228 bits (3178), Expect = 0.0, Method: Composition-based stats. Identities = 461/1173 (39%), Positives = 681/1173 (58%), Gaps = 50/1173 (4%) Query: 1 MS-EPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59 MS E FVHL VH++YS++DG + A L K+ A GMPA+A+TD + G V+FY Sbjct: 1 MSAEKNFVHLHVHTEYSLLDGAIRCADLAKRCAEWGMPAVAMTDHGVMYGAVEFYQQCKS 60 Query: 60 AGIKPIVGADFNVQCDLLGDE---LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPII 116 AG+KPI+G + V D + ++ HL +LA N+ GY NL L+S A RG+ P + Sbjct: 61 AGVKPIIGCEMYVSPDGIDNKEKKYNHLLLLAENDEGYHNLIKLVSIANTRGF-YYKPRV 119 Query: 117 DRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRTGR 175 D L + ++GLI S G++ R LL G+ E Y + F + +FLE++ Sbjct: 120 DHQLLAQYSKGLICSSACLAGEIPRFLLEGDEKGALERAQMYRDIFGAESFFLEIMPNQL 179 Query: 176 PDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYS 235 P++ + +E+A P++ATND +++SSD+D HE+ + + + DP R Sbjct: 180 PEQVAVNKMIIEMARKNNFPLLATNDAHYLNSSDYDWHELLLCVGTKKVITDPGRMSFRV 239 Query: 236 PQQYMRSEEEMCELF-ADIPEALANTVEIAKRCNVTVRL--GEYFLPQFPTGD-MSTEDY 291 Y RS +EM F ++ P++L NT+ IA+RC+ L G+Y LP+F + M+ + Y Sbjct: 240 NDFYFRSAQEMWGYFGSEAPDSLENTLRIAERCHFDFALNTGDYLLPKFEIPEGMTLDTY 299 Query: 292 LVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWS 351 L K A+ GL+ERL EY+ RL EL +I QM FPGYFLI+ + I Sbjct: 300 LEKMARSGLKERLGVEV--------IPDEYENRLSYELGIIKQMKFPGYFLIIADVIGAC 351 Query: 352 KDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKR 411 K +G+P+GPGRGS AGSLVAY++KIT+LDP+ F L+FERFLNPERVSMPD D D + R Sbjct: 352 KSHGIPIGPGRGSAAGSLVAYSMKITELDPIRFGLIFERFLNPERVSMPDIDTDVSDKGR 411 Query: 412 DQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL 471 D++I++V D YG + VSQIITFG M +K I+DVGR +G PY V++++ L+P D ++ Sbjct: 412 DRLIKYVVDKYGVENVSQIITFGRMKSKQAIKDVGRAMGMPYADVNKVANLVP-DGAKSI 470 Query: 472 AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCD 531 +A E P L ++ ++D ++ L+ A +EG+ R+ +HA GVVI P +TD P+ Sbjct: 471 KEAVEQTPDLQDLEKSDSQISKLLTSASSMEGLARHCSQHAAGVVITPKPLTDLVPVRQI 530 Query: 532 EEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPL 591 EEG+ TQF V GLVK DFLGL+TL+I+ A+ + +NG D+ +PL Sbjct: 531 EEGQ-VATQFSMDPVASLGLVKMDFLGLQTLSILEEAVANVK----RNGTTLGDLNRLPL 585 Query: 592 DDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNF 651 DD + + +LQ ++T +FQLES GM+ LIK++QPD F D++A++AL+RPGPL+SGMVD + Sbjct: 586 DDPEVYRLLQNADTLGIFQLESSGMRRLIKKMQPDRFADLVAILALYRPGPLESGMVDQY 645 Query: 652 IDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRA 711 ++ KHG E V + H L+PVL TYG++LYQEQVM+ A L+GYTLGGAD+LRRA Sbjct: 646 VNCKHGEE------VHYLHPLLEPVLNETYGVVLYQEQVMKCASTLAGYTLGGADLLRRA 699 Query: 712 MGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQT 771 MGKKK M + RS+F GA KNGI+AE +IFD++EKFAGYGFNKSHSAAYALV+YQT Sbjct: 700 MGKKKKSVMDEHRSIFINGAAKNGIDAEKGAEIFDIIEKFAGYGFNKSHSAAYALVTYQT 759 Query: 772 LWLKAHYPAEFMAAVMTADMDNTEKV-VGLVDECWRMGLKILPPDINSGLYHFHVNDDGE 830 WLK HYP EFMAA +++ + ++V V E G+ +L PDIN F + E Sbjct: 760 AWLKVHYPKEFMAAYLSSKIGAKKEVMAEYVREVRASGIDVLAPDINQSYADFTATKN-E 818 Query: 831 IVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDR 890 I +G+G + VGE + +I +AR +GG F+ +D R D + + V+E LI +GAFD Sbjct: 819 IRFGLGGVTKVGEAALNSIFKAREEGGPFKGFWDFIVRVDKHSVGKAVIESLIKAGAFDS 878 Query: 891 LGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVL 950 L +R L+ SL + + A + Q +FG + E + A L Sbjct: 879 LNSNRKQLLTSLDNLFEVASRR--DSQGDQGSLFGDMTSEDQ---PELAEVDDLNITEKL 933 Query: 951 DGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVI-TAAGLVVAARVMVTK 1009 + E+E LG+Y++GHP + + + + R+ D+ + T AGL+ + +TK Sbjct: 934 EMEKEALGMYISGHPFDGFRR-LAAQKANARIADLPYWKSDTTTPTFAGLLSGWQEKMTK 992 Query: 1010 RGNRIGICTLDDRSGRLEVMLFTDA-----LDKYQQLLEKDRILIVSGQVSFDDFSGGLK 1064 RG+ +GI ++DD ++V+ F A + + L + + +V+G+ D G Sbjct: 993 RGDAMGIFSIDDGEDEIKVICFPKARSGKSWLEIKPTLFEGKPYLVTGR---PDDRGERT 1049 Query: 1065 MTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADA 1124 + A +V ++ + + I L+ + + + L+ HR G V L Sbjct: 1050 IIATDVQPLENDASDH-NYVEICLSLDALREIPQKKFLTMLKEHR-GRQTVILKVDDDVE 1107 Query: 1125 RARLRFGATWRVSPSDRLLNDLRGLIGSEQVEL 1157 A + RV+ S L +DL L G + + Sbjct: 1108 TAAIALP-NVRVTSSRALEDDLVALFGRGEARI 1139 >UniRef50_A9GWC5 DNA polymerase III, alpha subunit n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GWC5_SORC5 Length = 1212 Score = 1228 bits (3178), Expect = 0.0, Method: Composition-based stats. Identities = 493/1220 (40%), Positives = 703/1220 (57%), Gaps = 77/1220 (6%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 F+HL VHS YS++DG + L +A +LGM A+A+TD N+ G ++ Y A GI Sbjct: 4 EFIHLHVHSQYSLLDGSLRVKDLAARAKSLGMRAVALTDHGNMFGAIQHYKACKDQGIGA 63 Query: 65 IVGADFNV------------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAA 112 I+G + NV + + + HL +LAA+ GY+NL ++S+ + Sbjct: 64 IIGCEVNVARSWGTAAGQVSRSGVDETPVDHLVLLAASEEGYKNLVRIVSQGHVDPASGL 123 Query: 113 GPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELI 171 P + D + + N GLI L+G G V + +L E ++ + F P ++EL Sbjct: 124 APSVRLDTVAQHNAGLIGLTGCMGGVVAQRILEQGEGEGREALSRLRDCFQPGSLYVELQ 183 Query: 172 RTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRP 231 G ++ A GLP+VATND F D + I T + Sbjct: 184 DHGLVEQSVLNGILARAAGDLGLPLVATNDAHFGAREDGEGQLYLSCIAANRTFAEASAA 243 Query: 232 RNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCN-VTVRLGEYFLPQFPTGDM--ST 288 + S + +++ +EM LF D P+A+ +T+EIA+RC+ + ++LG+ LP FP + Sbjct: 244 HHGSFEMFLKPADEMMHLFRDHPQAVRSTLEIAERCSTLKLKLGKPMLPTFPLPSGFADS 303 Query: 289 EDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFI 348 Y A +GL +RLA + + R Y RL+ EL VI QM FPGYFLIV +FI Sbjct: 304 ASYFRHVAHDGLTKRLAQIA--QTGRKVDEATYRARLDVELNVIVQMDFPGYFLIVWDFI 361 Query: 349 QWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCM 408 +++KD+G+PVGPGRGSGAGSLVAYA++ITDLDPL ++LLFERFLNPERVSMPDFDVDFCM Sbjct: 362 KYAKDHGIPVGPGRGSGAGSLVAYAMEITDLDPLPYNLLFERFLNPERVSMPDFDVDFCM 421 Query: 409 EKRDQVIEHVADMYGRD----AVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIP 464 ++RD+VI +V Y ++ +V QI TF + A++VI+DV R + P +I+ LIP Sbjct: 422 DRRDEVISYVTKKYSKEADKPSVGQIATFHELKARSVIKDVARAMAFPANEAQKIASLIP 481 Query: 465 PD-PGM--TLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTK 521 PG+ T+ +A E EP+L + E+D V L+ A+KLEG+TR+AG HA GVVI+ Sbjct: 482 QKSPGIMYTIPEALEIEPKLKALKESDPTVAELLKQAQKLEGLTRHAGMHAAGVVISEGP 541 Query: 522 ITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRR--AKN 579 + D P C + G+ VTQ+ K D E AGLVKFDFLGL+TLT+I+ A+ ++N R A Sbjct: 542 LWDHVP--CFKNGEQLVTQYYKDDAELAGLVKFDFLGLKTLTVIDIAVRLVNARPDLAAK 599 Query: 580 GEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFR 639 D+ +PLDD ++ +LQ ETT VFQLES GM+ L K L+PD FED++A VAL+R Sbjct: 600 EGKRFDVNTVPLDDTATYALLQSGETTGVFQLESSGMQQLFKDLKPDAFEDIVAAVALYR 659 Query: 640 PGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSG 699 PGPL +GMV +F+D KHGR+ I + H + +L+PTYG+I+YQEQVMQIAQ L+G Sbjct: 660 PGPLGTGMVKDFVDCKHGRKPI-----EKMHPLVDELLQPTYGVIVYQEQVMQIAQKLAG 714 Query: 700 YTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKS 759 YTLGGAD+LRRAMGKKKPEEMAKQ++ F +G+ KNG+ AE A +IF L+E FAGYGFNKS Sbjct: 715 YTLGGADLLRRAMGKKKPEEMAKQKATFVDGSLKNGVKAEDAERIFGLLEYFAGYGFNKS 774 Query: 760 HSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSG 819 HSAAYAL++YQT +LKAHYP EF+ A+MTAD D EKVV ++ E G++ILPP+IN Sbjct: 775 HSAAYALLTYQTAYLKAHYPVEFLCALMTADRDKIEKVVRIIAEGRAWGVEILPPEINES 834 Query: 820 LYHFHVN-------------------------DDGEIVYGIGAIKGVGEGPIEAIIEARN 854 F V D +I +G+GAI+GVGE +EAI+EAR+ Sbjct: 835 KTDFTVVYSAKPATNGKRVAGTRRGGSRVRDPYDPKIRFGMGAIRGVGESALEAILEARD 894 Query: 855 KGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRL----GPHRAALMNSLGDALKAAD 910 GG F +LFD R D +++N+ V E L+ GAFD G RA + AL+ + Sbjct: 895 AGGVFADLFDFAERVDPRRVNKGVFEALVQCGAFDASLHARGISRARAFAGIDRALERSR 954 Query: 911 QHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYL 970 +K Q +F +A + E Y + + W + L E+++LG Y++GHP+++Y Sbjct: 955 SASKERNSAQIGLFAAVASKSEVRLDDYPTAEDWDLRETLSREKQSLGFYVSGHPLDRYG 1014 Query: 971 KEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTK-RGNRIGICTLDDRSGRLEVM 1029 ++ R+ + + + + G+V R + K G +I L+D +GR+EV Sbjct: 1015 VDLNRF-DVTAVSALAGMDAWARVRVGGMVEGYRERIFKGGGGKIAFFVLEDTTGRVEVK 1073 Query: 1030 LFTDALDKYQQLLEKDRILIVSGQVSF----------DDFSGGLKMTAREVMDIDEAREK 1079 + ++ Y LL + +++SG++SF + + EV + +A Sbjct: 1074 VREKQIESYADLLNRGEPVLISGKISFPMVDEGAEEAEAAPREPTLLLDEVQPLADAILA 1133 Query: 1080 YARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADA-RARLRFGATWRVSP 1138 R +AI+L R + ++RL L G PV L Q D A L G RV P Sbjct: 1134 QTRSVAITLKSRSARREHIDRLGALLRA-SPGVCPVQLVIQLDDGAEAVLSLGRDLRVEP 1192 Query: 1139 SDRLLNDLRGLIGSEQVELE 1158 +D +L L L G + EL Sbjct: 1193 NDAMLGRLEKLFGEKVAELR 1212 >UniRef50_C1A6B9 DNA polymerase III alpha subunit n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A6B9_GEMAT Length = 1165 Score = 1227 bits (3176), Expect = 0.0, Method: Composition-based stats. Identities = 454/1188 (38%), Positives = 656/1188 (55%), Gaps = 59/1188 (4%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS FVHL HS+YS++DG + L+K+A MPALAITD N+ +F A Sbjct: 1 MS---FVHLHCHSEYSLLDGANRIDDLIKRAQHFEMPALAITDHGNMHAAWEFQEKARKA 57 Query: 61 GIKPIVGADFNVQCDLLGDE---------LTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111 GIKPI+G + V HL +LA + GY+NL L S Y G+ Sbjct: 58 GIKPILGMEAYVAPGDRRQRGRPAPGVKPYYHLVLLARDIVGYRNLVKLTSLGYTEGF-Y 116 Query: 112 AGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELI 171 P IDR+ L + +EGLI+ S G+V L+ E A+Y E F RY LE+ Sbjct: 117 TKPRIDRELLAQYSEGLIVSSACLAGEVASHLMEDRVDQAREAAAWYAELFKGRYHLEVQ 176 Query: 172 RTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRP 231 + + LA+ LPVVATND F+ D DAH++ + I G +D R Sbjct: 177 AHTSEGQAILNAKILSLADELSLPVVATNDAHFLKHEDHDAHDVLLCIGLGKDRNDRDRM 236 Query: 232 RNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM--STE 289 + Y Y ++ +E+ F + L NT+ IA +V +Y++P FP + + Sbjct: 237 K-YDDGLYFKAPDEIRTFFPGREDVLTNTLAIADAVDVQFAK-KYYVPSFPLPEGVATEN 294 Query: 290 DYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQ 349 D LV+ A +G +ER P ERL+ EL VI + G+ GYFLI +FI+ Sbjct: 295 DMLVQIATDGAKERYGDPLP---------ANVQERLDYELGVITKTGYAGYFLITADFIK 345 Query: 350 WSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCME 409 ++D G+PVGPGRGS AGSLVAYA +ITD+ PLEFDLLFERFLNPERVSMPD DVDFC E Sbjct: 346 AARDRGIPVGPGRGSAAGSLVAYATRITDVCPLEFDLLFERFLNPERVSMPDVDVDFCFE 405 Query: 410 KRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGM 469 +R +VIE+V YG+D+V QI+TFGTM ++A I+DVGR LG D ++KLIP P Sbjct: 406 RRGEVIEYVRQKYGKDSVGQIVTFGTMKSRAAIKDVGRTLGFTPAETDALAKLIPNAPNF 465 Query: 470 TL--AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAP 527 +L +A E P++ Y+ DE + L+D A KLEG++R+ G HA GVVIAP + +F P Sbjct: 466 SLTVKEAIEQVPEVKAFYKNDERYRQLLDFAVKLEGLSRHTGVHAAGVVIAPGPLDEFVP 525 Query: 528 LYC--------DEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKN 579 + D + + VTQ+D + +E AG++K DFLGL TLT+I L I +R K+ Sbjct: 526 ICTQASKGAGGDGDERVIVTQYDMTALEKAGMLKMDFLGLTTLTVITDTLRNIKERLGKD 585 Query: 580 GEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFR 639 + D+K++ +L+ T VFQ ES D++KR++ D F+D++A AL R Sbjct: 586 VV----LEERGFTDEKTYQVLRAGRTGGVFQFESPLATDVLKRMRCDRFDDLVASNALLR 641 Query: 640 PGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSG 699 PGPL +GM + +I RK G E Y L+P+L TYG+I YQEQVM+IAQVL+G Sbjct: 642 PGPLDAGMHNVYIRRKRGEEPTVYAL-----PELEPILSNTYGVITYQEQVMRIAQVLAG 696 Query: 700 YTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKS 759 +L AD+LR+A+GKK E + K+ F E A G + ++ ++ +E F YGFNKS Sbjct: 697 ISLAEADVLRKAVGKKDAELIKKELGKFTEKAIARGYSKKIIEELAGQIETFGRYGFNKS 756 Query: 760 HSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSG 819 HS AY++V+Y T +LK HYPAEFMAA++++++ TE+V+ + E MG+++L PD+N Sbjct: 757 HSVAYSVVAYHTAYLKTHYPAEFMAALLSSNIGKTEEVIKYIAEAREMGIEVLAPDVNES 816 Query: 820 LYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVL 879 + F V D I +G+GAI+ VG+G I++++ AR + G F L DLC R D + N+RV Sbjct: 817 GWRFTVIGDKRIRFGLGAIRNVGKGAIDSLLAARTE-GAFPTLHDLCGRVDLRLCNKRVF 875 Query: 880 EKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQ------ 933 E L+ +GA D LG HRA L+ +L A+ A + GQ +FG L + Sbjct: 876 EALVAAGACDTLGGHRAQLLGALDHAISEASLQQEEAERGQGSLFGDLMGDAPGNGGGNN 935 Query: 934 -IEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGK 992 Q + W E L E+E LG Y++GHP+ + E E + K T + Sbjct: 936 AAPQMLPNIAMWSESERLQREKELLGFYISGHPLEPHRTECELFATSTVAK--LGTWTAE 993 Query: 993 VITAAGLVVAARVMVTKR-GNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVS 1051 +T +V A R ++KR G T++D SG EV++F +A + + D L++ Sbjct: 994 PVTIGVVVTAIRKQISKRTGAEFARLTVEDFSGSSEVLVFPEAWGVIAERVRPDVPLLLK 1053 Query: 1052 GQVSFDDFS-GGLKMTAREVMDIDEAREKYARGLAISLTDR-QIDDQLLNRLRQSLEPHR 1109 G S D G EV E R +AI L + +++ +R +E H Sbjct: 1054 GGYSRKDQDVEGATFIVNEVTRFAELRASGDVAVAIDLGVSLDLSPAMMDDVRAKVESHE 1113 Query: 1110 SGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSEQVEL 1157 G+ P+ + + + + + RV+ S +L+DLR L+G+++V L Sbjct: 1114 -GSAPLEVRWLDGNGKVVRFRSKSLRVTASPAILSDLRALLGADRVRL 1160 >UniRef50_B5Y9K9 DNA polymerase III subunit alpha n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y9K9_COPPD Length = 1128 Score = 1225 bits (3171), Expect = 0.0, Method: Composition-based stats. Identities = 450/1177 (38%), Positives = 660/1177 (56%), Gaps = 72/1177 (6%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M+ +FVHL VHS YS++DG+ LV++A LGMPA+AITD GLV+F Sbjct: 1 MAN-QFVHLHVHSAYSLLDGVTLPKKLVQRAKDLGMPAIAITDHGVTYGLVEFVSEAQRL 59 Query: 61 GIKPIVGADFN-------VQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 GIKPIVG + + E HL +L N G++NL +L++KAY G+ Sbjct: 60 GIKPIVGVEGYQAQRDRKKREGNKDKEPFHLVLLVKNALGFRNLNILLTKAYLEGF-YYR 118 Query: 114 PIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIR 172 P D + L + +EGLI S G + R+LL G+ E Y++ F ++LE++ Sbjct: 119 PRFDWELLEQYHEGLIASSACLAGAIPRALLEGDEKKALELAGRYQDIFGKGNFYLEIMD 178 Query: 173 TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 D++ A VEL++ G+P++ TNDV + ++ ++ +AI G TL+DP R + Sbjct: 179 HNLADQQRVNKAIVELSKRTGIPLLVTNDVHYGRPEEYSIQDVLMAIATGATLNDPNRFK 238 Query: 233 NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTE-DY 291 + Q Y++S +EM E F++ PEAL N++ IA+ + + LGE LP+F + TE Y Sbjct: 239 YETDQMYLKSADEMWERFSETPEALLNSLAIAEMVDFMLPLGEQHLPKFSVPEGYTENSY 298 Query: 292 LVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWS 351 L K ++GL +R E +R+E EL VI +MGF GYFLIV ++I W+ Sbjct: 299 LRKLTQDGLLKRYGDNP---------SKEVLDRMEYELSVIEKMGFAGYFLIVQDYINWA 349 Query: 352 KDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKR 411 K G+PVGPGRGS AGSLVAY ITD+DPL++ LLFERFLNPER+SMPD DVDFC +R Sbjct: 350 KSQGIPVGPGRGSAAGSLVAYLTGITDVDPLQYGLLFERFLNPERISMPDIDVDFCARRR 409 Query: 412 DQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL 471 D+V+ +V + YG + V+QI TFGT+AA+A IRDVGRVLG P VDR+SK IP M L Sbjct: 410 DEVLRYVRNKYGEENVAQIATFGTLAARAAIRDVGRVLGVPLALVDRLSKSIPQ--NMEL 467 Query: 472 AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLY-- 529 A A E + + + ++ ++++A+++EG+ R+A HA GVVIA + ++ L Sbjct: 468 AHA-EKLDDVKNLISQNPDLARVLEIAKQVEGLPRHASTHAAGVVIADKPLYEYVALQAS 526 Query: 530 CDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAI 589 DE G + TQ K DVE GL+K DFLGLR +T+I+ AL I +R + +D+ + Sbjct: 527 SDEAGINVTTQLAKDDVEKLGLLKMDFLGLRNMTVISDALRWIKERYGID----VDLNKL 582 Query: 590 PLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVD 649 DD K ++ML ET AVFQLES G + +K L+P FE++IA AL+RPG L SG V Sbjct: 583 SKDDSKVYEMLSAGETVAVFQLESSGFRSFLKDLKPTRFEEIIAAEALYRPGTLGSGGVK 642 Query: 650 NFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLR 709 +++DRKHGRE + Y H+ LKP+LE TYGII+YQEQ+MQIA V++GY+LG AD+LR Sbjct: 643 SYVDRKHGREPVDY-----FHDDLKPILEETYGIIVYQEQIMQIASVIAGYSLGEADVLR 697 Query: 710 RAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSY 769 RA+ KKK EE+ K R F + G E KI++ + FA YGFNKSHSAAYA V+Y Sbjct: 698 RAISKKKEEEILKLREDFVSRGVQRGYARETVEKIYETIVHFAEYGFNKSHSAAYAHVTY 757 Query: 770 QTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDG 829 T WLK++YP E+ AA++ + +DNTEK+ + E R+G+KILPPD+N ++F + Sbjct: 758 YTAWLKSYYPTEYFAALLASFVDNTEKLKVYISEARRLGIKILPPDVNKSEHYFIPEGEN 817 Query: 830 EIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFD 889 EI +G+ IK VG +E I++ R GG F D R + + +N++V E LI +GAFD Sbjct: 818 EIRFGLLGIKNVGLAAVEEILKTRATGGPFSSFQDFLLRVNDRVVNKKVTESLIRAGAFD 877 Query: 890 RLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVV 949 LG R +L+ L + + + + Sbjct: 878 SLG-DRKSLLRQLSTGITTQTLFQIEDTSNDDLSLDPMED-------------------- 916 Query: 950 LDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTK 1009 ERE LGLY+T HP+ +Y+ + L + ++ G V + RV ++ Sbjct: 917 ---EREYLGLYITTHPLERYMAILSNQ-NLTALDSVGEI--DGLVQVGGFVSSTRVRKSR 970 Query: 1010 RGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTARE 1069 N+ TL+D + ++EV + D ++ ++ K I+ +S +V +D ++ A Sbjct: 971 NNNQYMTFTLEDLTSQVEVTVLPQKFDAFKPIISKPGIITLSARVESEDEKS--RLIAES 1028 Query: 1070 VM---DIDEAREKYAR-----GLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQR 1121 ++ + E +K L I L Q+ + L +L+ L+ H+ G PV Sbjct: 1029 LISFSPLSELDDKLKELDGKGVLRIVLRSEQVSVEKLKKLKVLLKQHK-GPTPVEFTVHL 1087 Query: 1122 ADARARLRFGATWRVSPSDRLLNDLRGLIGSEQVELE 1158 + R+ ++ VS + L L L V Sbjct: 1088 DGSIYRVLLPNSYWVSFTAELQEALFSLFNPMNVSFR 1124 >UniRef50_D1CB25 DNA polymerase III, alpha subunit n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CB25_THET1 Length = 1180 Score = 1224 bits (3168), Expect = 0.0, Method: Composition-based stats. Identities = 440/1196 (36%), Positives = 664/1196 (55%), Gaps = 75/1196 (6%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS FVHL +HSDYS++DGL K V A A GM A+A+TD + G ++ Y A Sbjct: 1 MSS-DFVHLHLHSDYSLLDGLGKIKDYVSLAKAYGMKAIALTDHGVMYGAIEMYTEALEA 59 Query: 61 GIKPIVGADFNVQCDLLGD-------ELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 GIKPI+G + V D + HL VLA + GYQNL L+S A+ GY Sbjct: 60 GIKPIIGCELYVAPRSRHDREKRLDSDYAHLLVLAKDYEGYQNLIKLVSYAFLEGY-YYK 118 Query: 114 PIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIR 172 P ID + L + ++GLI+ S G+V + LL+G E Y + YF+EL Sbjct: 119 PRIDHELLAKYSKGLIVTSSCIGGEVPQLLLQGKDKEARELADKYRSIVGRENYFIELQD 178 Query: 173 TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 ++ +ELA+ +P+VAT DV + D +I + + G + D R R Sbjct: 179 HPFEEQRIANTKLIELAKDLEIPLVATCDVHYPRQEDAAIQDILLCVQTGKQVTDKNRMR 238 Query: 233 NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDY 291 S YMRS +EM + F D PEA+ NT IA+ CN+ + +G++ LP F + + Y Sbjct: 239 MSSDTNYMRSPQEMEQAFRDYPEAIKNTALIAEMCNLQIPMGKWILPHFDVPEGYDLQSY 298 Query: 292 LVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWS 351 L +EGL ++ + + E +RLE EL VIN G+ Y LIV +F+ W+ Sbjct: 299 LRYLCEEGLRQKYSEV----------TQEIRDRLEYELDVINTKGYTAYMLIVQDFVNWA 348 Query: 352 KDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKR 411 + G+ V RGS AGSLV+Y L IT DP+E+ L FERFL R S PD D+DF ++R Sbjct: 349 RSRGIAVT-SRGSAAGSLVSYLLNITTADPIEYKLPFERFLTIHRPSPPDIDMDFEDKRR 407 Query: 412 DQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL 471 ++VIE+V YG + V+QIITFGTM A+A +RDVGR LG Y D I+K+I PG ++ Sbjct: 408 EEVIEYVTSKYGEENVAQIITFGTMEARAAVRDVGRALGISYSDTDTIAKMI--QPGWSI 465 Query: 472 AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCD 531 +A E L + YE DE +K LID+A KLEGVTR+A HA GV+I+ I ++APL D Sbjct: 466 KEALENSLALRQWYERDERIKQLIDVASKLEGVTRHASTHAAGVIISREPIINYAPLQKD 525 Query: 532 EEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPL 591 + G P+ QFD E GL+K DFLGL L+I+ A++ I + R + +++ +PL Sbjct: 526 KNGSRPLVQFDMRMCEKIGLLKMDFLGLANLSILGRAVKTIKQTRGID----IELDKLPL 581 Query: 592 DDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNF 651 DD K++++L ETT VFQLES GM+ IK L+P D+ A++AL+RPGP+ M+ + Sbjct: 582 DDTKTYELLSSGETTGVFQLESAGMRRYIKELKPSNIRDVAAMIALYRPGPMD--MIPTY 639 Query: 652 IDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRA 711 I RKHGRE + Y L+P+L+ +YG+++YQ+ ++ IA ++GYT AD LR+A Sbjct: 640 IARKHGREPVEY-----LVPGLEPILKDSYGVLVYQDDILLIAIEIAGYTWEEADKLRKA 694 Query: 712 MGKKKPEEMAKQRSVFAEGAEKN-GINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQ 770 +GKK EE+ QR F +G +++ G++ E A +++D +E FA YGFNK+H+AAY+LV+YQ Sbjct: 695 VGKKIREELEAQRDKFIKGCQEHGGLSPEKARELWDWMEPFARYGFNKAHAAAYSLVAYQ 754 Query: 771 TLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGE 830 T +LKA+YP+E+M++++T MDN+EKV + EC RMG+++LPP +N F + + Sbjct: 755 TAYLKANYPSEYMSSLLTVGMDNSEKVASGIVECNRMGIRVLPPSVNDSFEEFTLEPQSQ 814 Query: 831 -------IVYGIGAIKGVGEGPIEAIIEARN--KGGYFRELFDLCARTDTKKLNRRVLEK 881 I +G+GA+K VG GPI AI+ AR F+ C D K++N+R LE Sbjct: 815 RPGEPIPIRFGLGAVKNVGSGPISAIVSARESLPDKRFKSFEHFCTVVDFKQINKRALES 874 Query: 882 LIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFG-VLAEEPEQIEQSYAS 940 LI +GAFD G HR+ L+ ++ +A+ + +A +GQ +FG + + + Sbjct: 875 LIKAGAFDEFG-HRSQLLAAIDEAIALNQKMQRASDLGQFSLFGDAFSSQDHLPSLTLPE 933 Query: 941 CQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLV 1000 P++ +L E+E LGLYL+ HP+N L + R + ++ G+ + A ++ Sbjct: 934 VDEAPKEQLLAWEKEMLGLYLSEHPLNAVLGK-RRLDSTSLISEISEEMVGQTVRVAAML 992 Query: 1001 VAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFS 1060 V ++ TKR + I L+D++ ++ ++F + +KY+ LL D +L+V+G++ D+ Sbjct: 993 VNPQIRTTKRQQEMLIGKLEDQTSSIDFVVFPEQYEKYRDLLVSDAVLLVTGKL--DERQ 1050 Query: 1061 GGLKMTAREVMDIDEARE------------------KYARGLAISL-----TDRQIDDQL 1097 ++ V ID E + AR I + D ++D + Sbjct: 1051 ESFQIVCESVAKIDGNSEDEISQEVESLIEEDSPHPESARAYEIRIRFPVSDDIEVDIER 1110 Query: 1098 LNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSE 1153 + L + L H G V + + VS S L DL ++GS Sbjct: 1111 MQALYKLLRSH-PGDDKVLIQLPVGSRFVVIE-PTNLEVSFSAVLEQDLEKVLGSR 1164 >UniRef50_Q055U5 DNA-directed DNA polymerase, alpha subunit n=6 Tax=Leptospira RepID=Q055U5_LEPBL Length = 1176 Score = 1223 bits (3164), Expect = 0.0, Method: Composition-based stats. Identities = 413/1174 (35%), Positives = 675/1174 (57%), Gaps = 48/1174 (4%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 F HL +H++YSM+DG + L++ GM ++A+TD N+ G V+FY GIKP Sbjct: 7 DFAHLHLHTNYSMLDGAIRIKELMQHVKENGMSSVAMTDHGNMFGAVEFYNEATKQGIKP 66 Query: 65 IVGADFNVQCDLLGD---------ELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPI 115 I+G++F V + + HL +LA N GY+NL L SK+Y G+ Sbjct: 67 IIGSEFYVSPNRKQETEMVKIADGSAYHLILLAKNEEGYKNLIRLSSKSYTEGF-YKKAR 125 Query: 116 IDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRTG 174 ID D L + N GL+ L+ G+V R +L G + E F + +++E+ G Sbjct: 126 IDYDLLAQHNGGLVCLTACLAGEVNRKILEGKIDESFQLAGKLNEIFRKEDFYMEIQNHG 185 Query: 175 RPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNY 234 P++ + + + G+P+V TND F+ D +A +I + I + DP + Sbjct: 186 IPEQMTVAKQIYDFGKRTGIPLVVTNDSHFLKKDDQEAQDILLRIGMQKRITDP-MEFGF 244 Query: 235 SPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLV 293 + + Y++S +EM +F +IPEA NT+EI+ + ++ ++ G Y LP+F + + YL Sbjct: 245 NGEFYVKSPDEMARVFPEIPEAFYNTLEISNKVDLKLQFGNYLLPEFEVPEGYDADSYLE 304 Query: 294 KRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKD 353 K EG+ + L P E +R+ EL I M F GYFLIV ++I ++K Sbjct: 305 KLIWEGIGRKYPNLSP----------EIKDRVVFELNTIKNMKFAGYFLIVQDYINYAKR 354 Query: 354 NGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQ 413 NG+PVGPGRGS AGS+VAYAL IT+++PL+ +LLFERFLNP+R MPD D DFC+E+R++ Sbjct: 355 NGIPVGPGRGSAAGSIVAYALGITNVEPLQHNLLFERFLNPDRKDMPDIDTDFCVERREE 414 Query: 414 VIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAK 473 VI ++ YG + V QIITF ++AAKA ++DV RVL P+G + ++K P GM++A+ Sbjct: 415 VINYIRRRYGEEKVGQIITFNSLAAKAALKDVARVLNLPFGEANEMTKAFPNKLGMSIAE 474 Query: 474 AFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEE 533 A +L E D+ + +A++LEG R G+HA GVVI+P + + PL E Sbjct: 475 ALTTSSELKNFSEKDDINHKIFAIAQRLEGNYRQPGRHAAGVVISPYPLEEVVPLSTVAE 534 Query: 534 GKHP-----VTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAA 588 + P VTQ+DK+++E GL+K D LGL+ LT +++A+++I +RR +D+ Sbjct: 535 KERPGSRSIVTQYDKNNLESIGLIKMDILGLKNLTTLDYAIKLIERRRGVR----IDLDE 590 Query: 589 IPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMV 648 IP +D ++ +L+++ T +FQLES G+ DL+ + Q + F++++AL+AL+RPGP+ GM+ Sbjct: 591 IPYNDANTYALLRKANTLGIFQLESTGITDLVAKSQVNNFDEIVALIALYRPGPMGEGML 650 Query: 649 DNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADML 708 D ++DRK GR++++YP H S +P+L+ T+G+ +YQEQVM I++V+ G+++G +D+L Sbjct: 651 DEYLDRKSGRKQVTYP-----HPSCEPILKETFGVPVYQEQVMSISRVVGGFSVGDSDVL 705 Query: 709 RRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVS 768 R+AM KKK + M K + F EGA K GI ++A +F+ +E+F GYGFNKSHS AYA+++ Sbjct: 706 RKAMAKKKADLMEKLKYQFVEGAVKQGIQEKVAKDLFEQLERFGGYGFNKSHSVAYAIIT 765 Query: 769 YQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDD 828 YQT +LKA+Y E++ A++ +D T +V ++ MG++IL PD++ F+V DD Sbjct: 766 YQTAYLKANYTIEYLTALLASDHGKTTDIVKYINNAREMGIRILNPDVSESQASFNVIDD 825 Query: 829 GEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAF 888 I +G+ A+KGVGE +IIEAR+K G F+ L D DT+ +N++V E LI +GA Sbjct: 826 ATIRFGLSAMKGVGETAANSIIEARDKAGNFKTLQDFALNIDTRLINKKVFEALIQAGAL 885 Query: 889 DRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQV 948 D G R L S+ L A + + GQ +FGV W Sbjct: 886 DSFGYTRKCLFESVDSILTFAQREQERTNEGQFSLFGVGESSFTLNLPK--DALEWEIDE 943 Query: 949 VLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVT 1008 L E+ GLYL+GHP+++Y K+++ + + ++ + G + AG++ + + ++ Sbjct: 944 KLRREKAIAGLYLSGHPLDKYEKQLKS-LRTIPIEKFDNLKSGSKVEVAGIISSKNIKLS 1002 Query: 1009 KRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDF-----SGGL 1063 KR L+DR+G +E + F KY++ +++D+ + + G + + G + Sbjct: 1003 KRNEEFANFKLEDRTGEIECVAFAKTYQKYKEFIKEDQAIFIKGDLDKIEVGDTELRGQV 1062 Query: 1064 KMTAREVMDIDEAREKYARGLAISLTDRQI-DDQLLNRLRQSLEPHRSGTIPVHLYY-QR 1121 K+ + E++D +K + L + L +R D +L+ +L L ++ G V+ + + Sbjct: 1063 KVNSIEILDDTTIEDKLEKSLHLRLEERHTEDPELIPKLYALLACYK-GESSVYFHIVED 1121 Query: 1122 ADARARLRFGATWRVSPSDRLLNDLRGLIGSEQV 1155 + + +R T+ + P + L L L+G V Sbjct: 1122 REEKRVIRAHDTYSIQPINELFLRLADLLGDRSV 1155 >UniRef50_D1KB28 DNA polymerase III, alpha subunit n=1 Tax=uncultured SUP05 cluster bacterium RepID=D1KB28_9GAMM Length = 1150 Score = 1220 bits (3158), Expect = 0.0, Method: Composition-based stats. Identities = 517/1176 (43%), Positives = 725/1176 (61%), Gaps = 46/1176 (3%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M FVHL HS+YS+ + L + L+ K LGM A+A+TD NL VKFY Sbjct: 1 MPNIDFVHLHCHSEYSVKNSLIRIPKLIDKTKDLGMKAIALTDVGNLFAAVKFYQKSISN 60 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 GIKPI GA+ V+ + + +L + GY NL+ LIS +Y G G I + Sbjct: 61 GIKPIFGAELTVK---DKAQNFSVLLLCQDRQGYANLSELISLSYLHGQSVEGVSITTEQ 117 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 180 L+ ++GLI+++ DV L+ + E V F+ F DR++L + RTGR ++E Sbjct: 118 LVNHHQGLIMIAPHTRSDVAHHLMANQALEAREKVQFWASVFTDRFYLSVQRTGRANDEK 177 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 YLH +EL G+P+VATNDV F+ +SD+ AHE R+ I G LDD +R + YS +QY+ Sbjct: 178 YLHLCLELGLESGIPLVATNDVEFLVASDYQAHEARICISQGKLLDDARREKFYSAEQYL 237 Query: 241 RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-YFLPQFPTGDM-STEDYLVKRAKE 298 +S +EM LF+D+P+ LAN+VEIAKRCN+ L + +LP FP + S + + +K Sbjct: 238 KSADEMAALFSDLPQLLANSVEIAKRCNLHFELHKKNYLPNFPVPEGLSIAQFFEQESKA 297 Query: 299 GLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPV 358 GL +RL + R YDERL EL VI QM FPGYFLIV +FI WS++N +PV Sbjct: 298 GLGKRLEKI-------KANRKIYDERLTFELGVIVQMDFPGYFLIVADFIAWSRNNDIPV 350 Query: 359 GPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHV 418 GPGRGSGAGSLVAYAL IT++DP++ +LLFERFLNPERVSMPDFD+DFC ++RD+VI +V Sbjct: 351 GPGRGSGAGSLVAYALGITNVDPIKHELLFERFLNPERVSMPDFDIDFCTDRRDEVITYV 410 Query: 419 ADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEA- 477 A YG++ VSQIIT+G MAAK V+RDVGRVLGHPYGF DRISK IP D + L++A Sbjct: 411 AKKYGQEKVSQIITYGKMAAKGVVRDVGRVLGHPYGFSDRISKSIPNDLKINLSRALGIF 470 Query: 478 -------------EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524 +L + Y+++E V ALID++ +LEG+ RN G HAGGV+IAP+KI+D Sbjct: 471 DQKDSKEDKDKWYSEELKQRYDSEESVTALIDLSLELEGLVRNVGTHAGGVLIAPSKISD 530 Query: 525 FAPLYCDE-EGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPP 583 F P+Y E V+QFD DVE GLVKFDFLGL LT+I+ ++MI+ + + Sbjct: 531 FCPIYKGPGESDGVVSQFDMKDVEALGLVKFDFLGLSNLTVIDKTVKMIHAKGLSD--EL 588 Query: 584 LDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPL 643 +DI A+ LDDK + +LQRS+TT +FQLES GM+ +K+L+ D FED++A++AL+RPGPL Sbjct: 589 IDIDALSLDDKAVYKLLQRSDTTGIFQLESDGMRGYLKKLKADSFEDIVAMLALYRPGPL 648 Query: 644 QSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLG 703 +GMVD++I+ KHG D ++ H L+ +L+PT G+ LYQEQVM+ AQV++GY+LG Sbjct: 649 GAGMVDDYINVKHGE------DAKYPHPMLEEILKPTNGVFLYQEQVMKSAQVMAGYSLG 702 Query: 704 GADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAA 763 GAD+LRRAMGKK EM KQR VF +GA K I E A +IFDL++KF+GYGFNKSHS A Sbjct: 703 GADLLRRAMGKKIASEMEKQRDVFVKGAAKKKIKKEKANEIFDLIDKFSGYGFNKSHSVA 762 Query: 764 YALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHF 823 YA +SYQT WLKAHYPA FMA+V++ MD+T+K+ + E MGL + P++ Y F Sbjct: 763 YAYISYQTAWLKAHYPAAFMASVLSDKMDDTDKIAFTIGEVQNMGLIVNGPNVCESDYEF 822 Query: 824 HVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLI 883 + DD IVYG+GAIKGVGE ++ ++ R GG +++LF+ CAR + K LN+R +E LI Sbjct: 823 SIKDDKTIVYGLGAIKGVGEALVQTLVAEREAGGEYKDLFEFCARIEKKSLNKRAIEALI 882 Query: 884 MSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQP 943 SGAFD G RA+L+ + A+K A+Q + GQ +F + E E E SY C Sbjct: 883 YSGAFDVFGVDRASLLKTYPKAVKQAEQRQNDQTNGQNTLFNSIQEHAE-YELSYDPCPR 941 Query: 944 WPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAA 1003 + + L E+ +G Y HP ++Y +++R GV L K + L+ Sbjct: 942 FSFKERLKLEKSVMGYYFYDHPTDEYKDDLKRI--GVTLPKDTVLRNNKEVRVLALISEL 999 Query: 1004 RVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFD-DFSGG 1062 R + T+ G+++ ++D S +L ++F AL L + I+++S ++ + F Sbjct: 1000 RYITTRSGDQMASIIIEDGSTKLSAVIFPRALGPLSDKLIANEIVVISAKIKKNKKFGDE 1059 Query: 1063 LKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRA 1122 ++ E+ D + + + I L L N+L L H G PV YQ Sbjct: 1060 YQLIVDEIDSFDS----FFKSVEIKLKVEH--QTLFNQLSDVLHEHH-GQCPVKFLYQYD 1112 Query: 1123 DARARLRFGATWRVSPSDRLLNDLRGLIGSEQVELE 1158 + +L ++ VSP +L +L L+G E+ Sbjct: 1113 NLEGQLLLPQSYFVSPKQQLSEELDDLLGDRVSEIR 1148 >UniRef50_Q9XDH5 DNA polymerase III subunit alpha n=6 Tax=Bacteria RepID=DPO3A_THEAQ Length = 1220 Score = 1219 bits (3155), Expect = 0.0, Method: Composition-based stats. Identities = 463/1215 (38%), Positives = 676/1215 (55%), Gaps = 94/1215 (7%) Query: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAAL--GMPALAITDFTNLCGLVKFYGAGHG 59 S+ +F HL H+ +S++DG AK L+K PALA+TD NL G V+FY Sbjct: 3 SKLKFAHLHQHTQFSLLDGAAKLQDLLKWVKETTPEDPALAMTDHGNLFGAVEFYKKATA 62 Query: 60 AGIKPIVGADFNVQCDLLGDE---------LTHLTVLAANNTGYQNLTLLISKAYQRGYG 110 G+KPI+G + V + D HLT+LA + TGYQNL L S+AY G+ Sbjct: 63 MGVKPIIGYEAYVAAESRFDRKRGKGLDGGYFHLTLLAKDFTGYQNLVRLASRAYLEGF- 121 Query: 111 AAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170 P IDR+ L E +GLI LSG ++ + +L+ L + + F DR+F+E+ Sbjct: 122 YEKPRIDREILREHAQGLIALSGCLGAEIPQFILQDRLDLAEARLNEDLSIFGDRFFIEI 181 Query: 171 IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230 G P+++ E A GL +VATND ++ D AHE+ +AI TLDDP+R Sbjct: 182 QNHGLPEQKKVNQVLKEFARKYGLGMVATNDGHYVRKEDARAHEVLLAIQSKTTLDDPER 241 Query: 231 PRNYSPQQYMRSEEEMCELFADIP---EALANTVEIAKRCNVTVRLGE---YFLPQFPTG 284 R + Y+++ EEM + + E NTVEIA+ C+V + +G+ Y +P+FP Sbjct: 242 WRFPCDEFYVKTPEEMRAMLPEAEWGDEPFDNTVEIARMCDVDLPIGDKMVYRIPRFPLP 301 Query: 285 DMSTE-DYLVKRAKEGLEERLA-------------------------------------- 305 + TE YL + GL R Sbjct: 302 EGRTEAQYLRELTFLGLLRRYPDRITEAFYREVLRLLGTMPPHGDERALAEALARVEEKA 361 Query: 306 ------FLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVG 359 L P E R R EL VI +MGFPGYFLIV ++I W++ +GV VG Sbjct: 362 WEELRKRLPPLEGVREWTAEAILHRALYELSVIERMGFPGYFLIVQDYINWARGHGVSVG 421 Query: 360 PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVA 419 PGRGS AGSLVAYA+ IT++DPL F LLFERFLNPERVSMPD D DF +RD+VI++V Sbjct: 422 PGRGSAAGSLVAYAVGITNIDPLRFGLLFERFLNPERVSMPDIDTDFSDRERDRVIQYVR 481 Query: 420 DMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMT--LAKAFEA 477 + YG D V+QI TFG++A+KA ++DV RV G P+ + ++KLIP G L +A + Sbjct: 482 ERYGEDKVAQIGTFGSLASKAALKDVARVYGIPHKKAEELAKLIPVQFGKPKPLQEAIQV 541 Query: 478 EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHP 537 P+L E DE ++ +I++A +LEG+ R+A HA GVVIA +TD PL D+EG P Sbjct: 542 VPELRAEMEKDERIRQVIEVAMRLEGLNRHASVHAAGVVIAAEPLTDLVPLMRDQEG-RP 600 Query: 538 VTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSF 597 VTQ+D VE GL+K DFLGLRTLT ++ A ++ + + LD +PLDD K+F Sbjct: 601 VTQYDMGAVEALGLLKMDFLGLRTLTFLDEARRIVKESKGVE----LDYDRLPLDDPKTF 656 Query: 598 DMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHG 657 ++L R ET VFQLES GM ++ L+P ED+IALV+L+RPGP++ + +I R HG Sbjct: 657 ELLSRGETKGVFQLESGGMTATVRGLKPRRLEDIIALVSLYRPGPMEH--IPTYIRRHHG 714 Query: 658 REEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKP 717 +E +SY + + L+P+L+ TYGI +YQEQ+MQIA ++GY+LG AD+LRRAMGKK+ Sbjct: 715 QEPVSYAEFPHAEKYLRPILDETYGIPVYQEQIMQIASQVAGYSLGEADLLRRAMGKKRV 774 Query: 718 EEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAH 777 EEM K R F GA++ G+ E A ++FD++E FA YGFNKSH+AAY+L+SYQT ++KAH Sbjct: 775 EEMQKHRERFVRGAKERGVPEEEANRLFDMLEAFANYGFNKSHAAAYSLLSYQTAYVKAH 834 Query: 778 YPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGA 837 YP EFMAA+++ + +++KV + + +G+ +LPPD+N + F V + EI++G+ A Sbjct: 835 YPVEFMAALLSVERHDSDKVAEYIRDARALGIPVLPPDVNRSGFDFKVVGE-EILFGLSA 893 Query: 838 IKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAA 897 +K VGE AI+E R +GG F+ L D R + +N+R LE L+ +GA D G RA Sbjct: 894 VKNVGEMAARAILEERERGGPFKSLGDFLKRLPEQVVNKRALESLVKAGALDAFG-DRAR 952 Query: 898 LMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETL 957 L+ SL L+ A + + G +F + E P P E +L E+E L Sbjct: 953 LLASLEPLLRWAAETRERGRSGLVGLFAEVEEPP------LVEASPLDEITMLRYEKEAL 1006 Query: 958 GLYLTGHPINQYLKEIERYVGGVRLKDM----HPTERGKVITAAGLVVAARVMVTKRGNR 1013 G+Y++GHP+ +Y R V ++++ + +G+V T+ G Sbjct: 1007 GIYVSGHPVLRY--PGLREVASCTIEELSEFVRELPGKPKVLLSGMVEEVVRKPTRSGGM 1064 Query: 1014 IGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDI 1073 + TL D +G LEV++F A + L++D L+V +V L++ A+ V + Sbjct: 1065 MARFTLSDETGALEVVVFGRAYEGVSPKLKEDIPLLVLAEVEK---GEELRVLAQAVWTL 1121 Query: 1074 DEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGAT 1133 +E E + L + + +D++ + RL+ L+ H G++PV+L A Sbjct: 1122 EEVLEA-PKALEVEVDHALLDEKGVARLKSLLDEH-PGSLPVYLRVLGPFGEALFALRE- 1178 Query: 1134 WRVSPSDRLLNDLRG 1148 V + L L Sbjct: 1179 --VRVGEEALGLLEA 1191 >UniRef50_C7RGV3 DNA polymerase III, alpha subunit n=4 Tax=Clostridiales Family XI. Incertae Sedis RepID=C7RGV3_ANAPD Length = 1148 Score = 1219 bits (3154), Expect = 0.0, Method: Composition-based stats. Identities = 424/1183 (35%), Positives = 674/1183 (56%), Gaps = 69/1183 (5%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 +F HL VH++YS++DG ++ L+ +A LGM +LAITD + G+++FY GIKP Sbjct: 4 KFTHLHVHTEYSLLDGFSRIDLLLDRAKELGMDSLAITDHGQMYGVIEFYKQAKKRGIKP 63 Query: 65 IVGADFNVQCDL------LGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDR 118 I+G + V + HL +LA N GY+NL ++S+AY G+ P + Sbjct: 64 IIGCEVYVSENDHTIKEASNRRYYHLILLAKNMDGYKNLIKIVSEAYVNGF-YYKPRVSF 122 Query: 119 DWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRTGRPD 177 D++ + +E +I LS G+V + L+ + E YEE F ++LEL G + Sbjct: 123 DFIKKYSEDIIALSACLNGEVSQRLIENDYESAKETAQRYEEAFGKGNFYLELQNHGIKE 182 Query: 178 EESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQ 237 + + E +P+VATND+ +I+ D ++ + I G + D R + + + Sbjct: 183 QNIVNRGLARIHEEEDIPLVATNDIHYINKEDAYYQDVLLCIQTGKLVKDEDRMKMPASE 242 Query: 238 QYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFP--TGDMSTEDYLVKR 295 Y++S EM ELF A+ NT +IA +CNV E LP F ++ +YL K Sbjct: 243 FYLKSYNEMKELFGAYQGAIENTQKIADQCNVEFTFHEPHLPYFTKVEEGLTDLEYLKKL 302 Query: 296 AKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNG 355 +GL ++ + + R + E++VI MG+ YFLIV +F++++++N Sbjct: 303 VDQGLIKKYGSI----------SEKIRSRADKEIKVIADMGYVDYFLIVWDFVRYAREND 352 Query: 356 VPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVI 415 + VGPGRGS AGS+V+YAL IT +DPL++ L+FERFLNPERVSMPD D+DF RD+V+ Sbjct: 353 IAVGPGRGSAAGSIVSYALDITQIDPLKYKLIFERFLNPERVSMPDIDIDFDYVLRDKVV 412 Query: 416 EHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAF 475 E+V ++YGRD VSQI+TFG M A+ +RDVGRVL Y VD+I+KLIP GMT+ KAF Sbjct: 413 EYVNELYGRDHVSQIVTFGRMQARNAVRDVGRVLDISYAKVDKIAKLIPQAIGMTIDKAF 472 Query: 476 EAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGK 535 ++ + EIYE+D E K LID ARK+EG+ R+ HA GVVI+ +TD PL Sbjct: 473 DSSSKFKEIYESDVEAKRLIDTARKVEGLPRHTSIHAAGVVISKEVLTDIIPL--ALSND 530 Query: 536 HPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKK 595 VTQ+D +++E GL+K DFLGLR LT+I ++ + K R + +D++ I ++DK Sbjct: 531 LVVTQYDMTEIEELGLLKMDFLGLRNLTVIKNTIKDVKKNRGID----VDLSKIDVNDKN 586 Query: 596 SFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRK 655 D ++T +FQ ES GM++ +K L+P F+D+IA +LFRPGP+ + +I K Sbjct: 587 VIDQFNNAKTIGIFQFESAGMRNFLKNLKPTVFDDLIAANSLFRPGPMDE--IPKYIHNK 644 Query: 656 HGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKK 715 + ++++ D +LKP+L+ TYGII+YQEQVMQI Q L+GY+LG AD LRRAM KK Sbjct: 645 NNPADVTFID-----PALKPILDVTYGIIVYQEQVMQIVQKLAGYSLGEADNLRRAMSKK 699 Query: 716 KPEEMAKQRSVFAE------------GAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAA 763 K M + R +F + G +NG++ A +I+D + FA Y FNKSHSAA Sbjct: 700 KMAVMEENRGIFIKGKTDSSGNVVIPGCIRNGVDESSANQIYDEMISFAKYAFNKSHSAA 759 Query: 764 YALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHF 823 Y+LV+ QT +LK +YP E+MA ++++ MD + K+ V+E +G+++LPPD+N F Sbjct: 760 YSLVAIQTAYLKYYYPEEYMANLISSVMDQSSKLYLYVNETKALGIEVLPPDVNKSFAEF 819 Query: 824 HVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCART---DTKKLNRRVLE 880 V ++G+I++G+ IK VG I++I++AR K G F D R D++ LN++ +E Sbjct: 820 SV-EEGKIIFGLSGIKNVGSNLIDSIVKARKKDGKFTNFKDFLQRVDEIDSRSLNKKGIE 878 Query: 881 KLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYAS 940 LI +GAFD L R++LM A+ A + K GQ ++ LA++P++ + Sbjct: 879 SLIKAGAFDSLKYTRSSLMAIYEKAISAVSDNRKINVKGQLNLLDDLADKPKE-DVRIQE 937 Query: 941 CQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVR--LKDMHPTE----RGKVI 994 +P++ L E+E LG Y++ HP++ + +V + T K + Sbjct: 938 INEFPKKTKLKLEKEVLGFYISDHPLSDLGDRLGDFVNFTTDYKDHIDDTRIHLLDNKFV 997 Query: 995 TAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQV 1054 + AG++ ++TK+ + TL+D G +E+++F + KY+ ++++D +IV G + Sbjct: 998 SMAGVITNKSEIMTKKRQLMCFATLEDMQGSIEIVIFPEVYRKYRNVIDEDSAVIVKGNL 1057 Query: 1055 SFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIP 1114 D+ +K+ E +DI++ K + L ++ N++R L ++ GT P Sbjct: 1058 QVDERD--IKLLTNEFVDIEKLNFK-----TLYLKSEYLEY---NKVRNILVQNK-GTTP 1106 Query: 1115 VHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSEQVEL 1157 V +Y+ AD ++ +++ + L +G E V++ Sbjct: 1107 VVIYF--ADKNKSVKLDKKLWFDINEKSIKVLEEFLGKENVKI 1147 >UniRef50_A5GTL9 DNA polymerase III alpha subunit n=20 Tax=cellular organisms RepID=A5GTL9_SYNR3 Length = 1179 Score = 1219 bits (3153), Expect = 0.0, Method: Composition-based stats. Identities = 446/1172 (38%), Positives = 670/1172 (57%), Gaps = 65/1172 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FV L HSDYS++DG + +V++A LGMPA+A+TD + G ++ AGIKPI Sbjct: 7 FVPLHNHSDYSLLDGATQLPAMVQRAVDLGMPAVALTDHGVMYGAIELLKLCSKAGIKPI 66 Query: 66 VGADFNV------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG----PI 115 +G + V + HL VLA NN GY+NL L S ++ RG G Sbjct: 67 IGNEMYVVNGSIDDPQPKKERRYHLVVLAKNNVGYRNLVKLTSISHLRGMRGRGIFARAC 126 Query: 116 IDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGR 175 ID+ L + +EGLI+ + G++ +++LRG + + ++Y + D ++LE+ G Sbjct: 127 IDKHLLQQYSEGLIVATACLGGEIPQAILRGRMDVARQVASWYRDLLGDDFYLEIQDHGS 186 Query: 176 PDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYS 235 P++ + L+ G+ ++ATND ++ D +AH+ + + G L D KR R Y+ Sbjct: 187 PEDRIVNTGLLTLSRELGIQLIATNDAHYLSRDDVEAHDALLCVLTGKLLSDEKRLR-YT 245 Query: 236 PQQYMRSEEEMCELFADI------PEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTE 289 +Y++S EEM LF D +AL NT+ +A++ LG Y +P+FP + T Sbjct: 246 GTEYIKSREEMERLFVDHLPAEVVQQALDNTMSVAEKVEDYDILGRYQMPRFPIPEGHTP 305 Query: 290 -DYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFI 348 YL + ++GL +RL + L Y ER+ EL+++ QMGFP YFL+V ++I Sbjct: 306 VSYLHEVTEQGLRQRLQLDADSSIDEL-----YGERMRHELKIMEQMGFPTYFLVVWDYI 360 Query: 349 QWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCM 408 ++++DNG+PVGPGRGS AGSLVAYAL IT++DP+ LLFERFLNPER SMPD D DFC+ Sbjct: 361 RFARDNGIPVGPGRGSAAGSLVAYALGITNIDPVSNGLLFERFLNPERKSMPDIDTDFCI 420 Query: 409 EKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG 468 +R +VI++V + YG D V+QIITF M +KAV++DV RVL PYG DR++KLIP G Sbjct: 421 ARRSEVIDYVTERYGDDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKLIPVVRG 480 Query: 469 MTLAKAF-----EAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKIT 523 A EP+ + YE+D +VK +DMAR++EG + G HA GVVIA + Sbjct: 481 KPAKLAQMISEDSPEPEFRQKYESDPQVKRWVDMARRIEGTNKTFGVHAAGVVIAADPLD 540 Query: 524 DFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPP 583 + PL + +G+ +TQ+ DVE GL+K DFLGL+ LT+I LE+++ Sbjct: 541 ELVPLQRNNDGQ-VITQYFMEDVESMGLLKMDFLGLKNLTMIEKTLELVSAEHGDRP--- 596 Query: 584 LDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPL 643 D +P DD +++ +L R + +FQLES GM+ +++ L+P ED+ +++AL+RPGPL Sbjct: 597 -DPDQLPADDPETYQLLARGDLEGIFQLESTGMRQIVRDLKPSSLEDISSILALYRPGPL 655 Query: 644 QSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLG 703 +G++ FI+RKHGRE I + D + L+P+L+ TYGI++YQEQ+M+IAQ L+GY+LG Sbjct: 656 DAGLIPKFINRKHGREAIEFADAK-----LQPILQETYGIMVYQEQIMRIAQDLAGYSLG 710 Query: 704 GADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAA 763 AD+LRRAMGKKK EM K R +F EGA + G++A++A ++FD + FA Y FNKSHS A Sbjct: 711 EADLLRRAMGKKKVSEMQKHRGIFVEGASQRGVDAKVADELFDQMVLFAEYCFNKSHSTA 770 Query: 764 YALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHF 823 Y V+YQT +LKAHYP +MAA++T + TEKV + MG+ +LPPD+N F Sbjct: 771 YGAVTYQTAYLKAHYPVAYMAALLTVNAGVTEKVQRYIANSNAMGIAVLPPDVNRSGIDF 830 Query: 824 HVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCART-DTKKLNRRVLEKL 882 I++G+ A++ +G+G I A+I +R G F L +LC R +LNRR LE L Sbjct: 831 TPVGQ-RILFGLSAVRNLGDGAIHALIASRQSDGPFTSLAELCDRMAGIGQLNRRSLESL 889 Query: 883 IMSGAFDRLGP--HRAALMNSLGDALKAADQHAKAEAIGQADM--------FGVLAEEPE 932 I SGA D L P +RA LM L L A A+ A GQ ++ A Sbjct: 890 IHSGALDALEPDGNRAQLMADLDLLLDWATARARDRASGQGNLLDLLGGGSEAEAASATP 949 Query: 933 QIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGK 992 AS + L E+E +G YL+ HP+ Q L++ R + V L + + Sbjct: 950 ASAPKAASVPDYAPTEKLRLEKELVGFYLSDHPLKQ-LQDTRRLLMPVGLGSLSEQSDRQ 1008 Query: 993 VITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSG 1052 ++ +V RV+ T++G+R+ I ++D +G E ++F + L D L++ G Sbjct: 1009 RVSTLVMVPEMRVVTTRKGDRMAILQIEDLTGSAEAVVFPKTYARLSDHLMVDARLLLWG 1068 Query: 1053 QVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLT-DRQIDDQLLNRLRQSLEPHR-- 1109 QV D +++ +V ID+ + + L + D + ++LR+ L+ HR Sbjct: 1069 QV--DRRDDRVQLIVDDVSLIDQLDL-----VVVRLDGPQAADITVQHQLRECLQQHRID 1121 Query: 1110 ----SGTIPVHLYYQRADARARLRFGATWRVS 1137 +PV Q A+ R +R G + V+ Sbjct: 1122 PEILGSRVPVVAEVQAANQRCFVRLGHQFCVN 1153 >UniRef50_B2KB15 DNA polymerase III, alpha subunit n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KB15_ELUMP Length = 1167 Score = 1218 bits (3152), Expect = 0.0, Method: Composition-based stats. Identities = 437/1185 (36%), Positives = 685/1185 (57%), Gaps = 59/1185 (4%) Query: 5 RFVHLRVHSDYSMIDGLAK-----TAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59 FVHL HS+YS++DG+ + + +K+ AA G A+AITD N+ G + FY Sbjct: 2 EFVHLHNHSEYSLLDGMLRLSEKGPSKFLKQVAADGFKAMAITDHGNMYGAMDFYKNAAA 61 Query: 60 AGIKPIVGADFNVQCDLLG------DELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 AGIKPI+G + + D+ HLT+LA + GYQNL LISKA+ G+ Sbjct: 62 AGIKPIIGCEAYITNGSHKNKEKGLDKTFHLTLLAKDYEGYQNLMALISKAWLDGF-YYH 120 Query: 114 PIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIR 172 P ID+D L + +G++ LSG G+V + LL G A E YE Y++EL+ Sbjct: 121 PRIDKDILAQHAKGIMALSGCLKGEVSQELLNGTFAQACEYAKTYESILGKGNYYIELMD 180 Query: 173 TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 G +E+ L +E++++ G+PVVATND + D+ AH+I + I G TLDDP R + Sbjct: 181 HGIEEEQIILPKLIEVSKSTGIPVVATNDCHYEKQEDWQAHDIHMCISMGKTLDDPNRLK 240 Query: 233 NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF--PTGDMSTED 290 + + + Y +S +EM ELF+ IPEA++NT+E+A++CNV + + LP F P T+ Sbjct: 241 SSTHELYFKSAQEMAELFSYIPEAVSNTLEVAEKCNVVMPKSGFVLPVFDIPPSFSDTDS 300 Query: 291 YLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQW 350 Y+ +EGL ++++ + P P Y ERL+ EL VI +MGF YFLIV +FI + Sbjct: 301 YIKNLCQEGLAKKMSGIIP---------PNYQERLDYELGVIGKMGFSSYFLIVADFIDY 351 Query: 351 SKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEK 410 ++ N +PVGPGRGSGAGS+VAY+L IT +DP++ LLFERFLNP+R+SMPD D+DF E Sbjct: 352 ARQNHIPVGPGRGSGAGSIVAYSLNITKVDPIKNGLLFERFLNPDRLSMPDLDIDFSDEG 411 Query: 411 RDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMT 470 R+QVI +V + YG V+QIITFGTM AK ++DV RVL P +RI+KLIP D G T Sbjct: 412 REQVINYVRNKYGETNVAQIITFGTMKAKMAVKDVARVLNIPVSESNRITKLIPNDLGTT 471 Query: 471 LAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYC 530 + A E +L + ++ + L D A+KLEG+ R+AG HA G+V+ +++ +APL Sbjct: 472 IDSAIETVKELKQEIASNPQTAKLFDFAKKLEGLKRHAGIHAAGIVVTREEVSKYAPLAR 531 Query: 531 DEEGKHPVTQFDKSDV-EYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAI 589 + + TQ++ + + GL+K DFLGLRTLTII+ A+++I R + +DI I Sbjct: 532 GSK-EAITTQYEGGILADDLGLLKIDFLGLRTLTIIDNAVDIIKNMRGID----IDIDNI 586 Query: 590 PLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVD 649 PLD+KK++++L ++T +FQLES GM+DL+KRL+P F D+ ALVAL+RPGP++SGM++ Sbjct: 587 PLDNKKTYELLSSAKTLGIFQLESGGMRDLVKRLKPSEFSDISALVALYRPGPMESGMLE 646 Query: 650 NFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLR 709 +F+ RK G+E+I+Y ++PVL+ TYG ++YQEQ+M+++++L G+T G AD LR Sbjct: 647 SFVRRKAGQEKITYDT-----PLMEPVLKETYGTMVYQEQIMELSKLLGGFTPGQADSLR 701 Query: 710 RAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSY 769 +AMGKKK +EM K R F G IN + A KIF+ + KFAGYGFNKSHS AYALVSY Sbjct: 702 KAMGKKKVDEMEKARVNFVNGCAGKKINPKTADKIFEQMSKFAGYGFNKSHSVAYALVSY 761 Query: 770 QTLWLKAHYPAEFMAAVMTADM--------DNTEKVVGLVDECWRMGLKILPPDINSGLY 821 QT +LKA+YP EFM +++T ++ D K+V ++E +MG + L PD+N Sbjct: 762 QTAYLKANYPIEFMCSLLTNEIGHNAIGSDDKENKIVTYIEEAKKMGFETLGPDVNHSKE 821 Query: 822 HFHVND---DGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRV 878 +F + + I +G+ A+K VG +I+ AR + DL R D K N++ Sbjct: 822 NFSIEEVNGKEIIRFGLEAVKNVGTEAAASIVSARGDR-PYCGFQDLLERIDLKASNKKT 880 Query: 879 LEKLIMSGAFDRLGPH------RAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPE 932 +E LI +GA D L P RA ++ + D L+ + + + +FG + Sbjct: 881 IESLIKAGALDSLIPGKTPNSARAVMLAEMEDMLEITAKIKEEKESSICSLFGEDSSAFV 940 Query: 933 QIEQSYASCQPWP--EQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTER 990 +++ P P ++ +L+ E+E LG Y +GHP+ +Y K +++ + V +++++ Sbjct: 941 SVKKKETKTAPRPLKQEQLLEMEKEVLGFYNSGHPLAKYKKHMDK-IKSVTIEEINENNI 999 Query: 991 GKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIV 1050 + G++ + KR ++D +G++ ++ + + +E + I+ + Sbjct: 1000 KGAVNILGIITRVKKRQNKRKEDWAQFIIEDETGQMSANAYSRVYAEIAEKIENNAIVYL 1059 Query: 1051 SGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRS 1110 +G + D+ S ++ + I + A + I + + +RL +L Sbjct: 1060 TGDIKTDEESARTEIMVSNIESIIPVISRAAAKVTIDIPKGY--SETNSRLLNTLLERGK 1117 Query: 1111 GTIPVHLYYQRADA-RARLRFGATWRVSPSDRLLNDLRGLIGSEQ 1154 G V+ + D +A + ++ L++ + +G Sbjct: 1118 GITEVYFNIESPDEDKAPFLVRSQHKIVLHKALIDHIENTLGENS 1162 >UniRef50_B9KZ27 DNA polymerase III alpha subunit n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KZ27_THERP Length = 1166 Score = 1218 bits (3151), Expect = 0.0, Method: Composition-based stats. Identities = 452/1186 (38%), Positives = 658/1186 (55%), Gaps = 59/1186 (4%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M+ P + HL +H+++S++DGL + V +A LGM LAI+D L G++ +Y A Sbjct: 1 MARP-YAHLHLHTEFSLLDGLGRIPEYVGRARELGMEHLAISDHGVLYGIIDWYKAVRAE 59 Query: 61 GIKPIVGADFNVQCDLLGDE---LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIID 117 G+ PI+G + + + D + HL +LA N GY+NL L ++A G+ P ID Sbjct: 60 GLHPIIGMEAYLAPRSVQDRDKTIYHLLLLAENERGYKNLLKLATRASLEGF-YYKPRID 118 Query: 118 RDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRTGRP 176 L E EGLI S G + +LL GN E E F PDR+++EL G P Sbjct: 119 MAMLAEHAEGLIATSACLGGPIANNLLNGNHEAAREWGIRLRELFGPDRFYIELQDHGLP 178 Query: 177 DEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSP 236 ++ V LA LP+V TNDV ++ D ++ + I TLDDPKR R S Sbjct: 179 EQRRVNSELVALARELDLPLVVTNDVHYLRQEDASVQDLLICIQTNSTLDDPKRMRVQSD 238 Query: 237 QQYMRSEEEMCELF-ADIPEALANTVEIAKRCNVTVRLGEYFLPQ--FPTGDMSTEDYLV 293 Q Y +S EEM LF A++PEAL NTV IA+RC V + G LP P G M+ +DYL Sbjct: 239 QLYFKSAEEMWRLFGAEVPEALLNTVRIAERCEVELEFGRLHLPDPGIPAG-MTADDYLA 297 Query: 294 KRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKD 353 EG+ +R L E RLE EL VI Q GF Y LIV +F ++++ Sbjct: 298 ALCWEGIRQRYPEL----------TEEVRRRLEYELDVIRQTGFSSYMLIVRDFAEFARQ 347 Query: 354 NGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQ 413 G+ G RGS A S+V YAL ITD+DPL L+FERFLNPER MPD D+DF ++R + Sbjct: 348 RGILYGV-RGSAAASIVLYALGITDVDPLANRLVFERFLNPERREMPDIDMDFADDRRHE 406 Query: 414 VIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAK 473 VIE+VA YG + V+QIITFGTM AKA IRDVGR +G P+ VDRI++LIP MTL + Sbjct: 407 VIEYVARKYGAEHVAQIITFGTMGAKAAIRDVGRAMGWPHAEVDRIARLIPSGVNMTLER 466 Query: 474 AFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLY---C 530 A E P+L +YE D + LID ARKLEG+ R+AG HA GVVI+ + + + PL Sbjct: 467 ALEESPELRHLYETDPRSRELIDNARKLEGIARHAGTHAAGVVISASPLVEHVPLQRPAR 526 Query: 531 DEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIP 590 EEG P TQF V GL+K DFLGL LTI+ A+E+I + R + +D+ IP Sbjct: 527 AEEGALPTTQFPMETVAEIGLLKMDFLGLANLTILANAVELIRETRGET----IDLKQIP 582 Query: 591 LDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDN 650 +DD+K+F++L +T VFQLES GM+ I+ L+P ++ A++AL+RPGP+Q + Sbjct: 583 MDDRKTFELLAEGQTFGVFQLESAGMRRYIRELRPTSVAELAAMIALYRPGPMQH--IPR 640 Query: 651 FIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRR 710 + KHG E I YP H L +L+ TYG+I+YQ+QV+ IA+ +GYTLG AD++R+ Sbjct: 641 YCRAKHGLEPIQYP-----HPDLAEILDETYGVIVYQDQVLLIARKFAGYTLGEADIMRK 695 Query: 711 AMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQ 770 AMGKK PE+M +R F GA G + E A +IF+L+E FAGY FNK+H+ YA+VSYQ Sbjct: 696 AMGKKIPEKMRAERERFIAGAIAKGYSEEDAERIFNLIEPFAGYAFNKAHATCYAVVSYQ 755 Query: 771 TLWLKAHYPAEFMAAVMTADMDNT----EKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 T +LKA+YP E+M A++ + +++ + EC ++G+ +LPPDIN F V Sbjct: 756 TAYLKANYPVEYMTAILRNAPSHPSGTVKRIAAALAECQKLGISVLPPDINHSEATFTVE 815 Query: 827 ----DDGEIVYGIGAIKGVGEGPIEAIIEARNK--GGYFRELFDLCARTDTKKLNRRVLE 880 I +G+ +K VGE +EAI+ ARN+ G FR C D +NRR +E Sbjct: 816 QLPDGSRAIRFGLAMVKHVGEAAVEAILAARNEQPGKVFRSFEHFCETIDWSVVNRRAVE 875 Query: 881 KLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLA-EEPEQIEQSYA 939 LI GA D G R L+ L A++AA KA GQ D+F + ++ + S Sbjct: 876 SLIKCGALDCFG-DRKILLAQLDQAIQAAQARQKALRRGQMDLFSAVGHDQAAPLRFSRP 934 Query: 940 SCQP--WPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAA 997 +P P + +L ERE LG+YL+ HP+++++ + R G V++ ++ G+ + Sbjct: 935 DIEPPDIPTRTLLGWERELLGVYLSAHPLDEFV-LLGRLRGLVQIAELDDESVGQTVELL 993 Query: 998 GLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFD 1057 L+ R + T+ G + + L+DRSG +E ++F D + ++ L ++ I+++ +V Sbjct: 994 ALISGVRKLTTRTGRVMAVLQLEDRSGTIEAVVFPDLYETTRERLAEESIVLLQARVE-- 1051 Query: 1058 DFSGGLKMTAREVMDIDEAREKYARG---LAISLTDRQIDDQLLNRLRQS--LEPHRSGT 1112 + + L++ V D E + + + L D+ + R+ L +G Sbjct: 1052 ERNEELQLVVESVADPREDLRNLVQPSRIVHVRLPITTSVDEDIERMHALRDLLVTFAGD 1111 Query: 1113 IPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSEQVELE 1158 V ++ A + + RV + +G+ V +E Sbjct: 1112 DEVRIHLPLAQGE--IVLASRLRVDWCADFARVIEATLGAGSVWVE 1155 >UniRef50_C6D8C3 DNA polymerase III, alpha subunit n=5 Tax=Firmicutes RepID=C6D8C3_PAESJ Length = 1220 Score = 1217 bits (3148), Expect = 0.0, Method: Composition-based stats. Identities = 427/1079 (39%), Positives = 632/1079 (58%), Gaps = 30/1079 (2%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL VHS+YS++DG A+ LV +AA GM ALA+TD + G + FY A GIKPI Sbjct: 8 FVHLHVHSEYSLLDGAARIRDLVARAAEQGMKALALTDHGVMYGAIPFYRACLARGIKPI 67 Query: 66 VGADFNV-------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDR 118 +G + + + + HL +LA N TGY+NL L+S + G+ P ID Sbjct: 68 IGCEMYFTAGSRFEKGTRKDNPIYHLILLAKNETGYRNLMKLVSIGHLEGFHY-KPRIDP 126 Query: 119 DWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDE 178 + L +EGL+ LS G++ + LL Y+ F D ++LEL G D+ Sbjct: 127 EVLEAHSEGLVCLSSCLHGEISQHLLHDRREEALTAAMRYKRIFGDDFYLELQDHGMLDQ 186 Query: 179 ESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQ 238 + A +ELA G+ + ATNDV ++ D ++ + I G ++DD R + + Q Sbjct: 187 KKVAAAMIELARETGIKLTATNDVHYLTPEDAAVQDVLICIGTGKSVDDTDRMKMGTDQL 246 Query: 239 YMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF--PTGDMSTEDYLVKRA 296 YM+S EEM LF +PEA+ +T EIA +C++ + G LP F G M++ YL + Sbjct: 247 YMKSGEEMELLFRHVPEAIRHTAEIADKCSLELTFGRAALPVFRPVPGGMTSTAYLAELC 306 Query: 297 KEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGV 356 + GL R A L P E R + + RL EL VI MGF YFLIV +F++++ + G+ Sbjct: 307 RSGLASRYAGL-PQWSEDPAYREQAEARLAYELSVIENMGFSDYFLIVWDFVRFAHEQGI 365 Query: 357 PVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIE 416 GPGRGS AGSLVAY L+ITD+DPL++ LLFERFLNPER++MPD D+DF E+RD+VI Sbjct: 366 RTGPGRGSSAGSLVAYVLRITDVDPLKYKLLFERFLNPERITMPDIDIDFNDERRDEVIA 425 Query: 417 HVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFE 476 +V+ YG + V+QIITFGTMAAKA +RDVGR + P+ VDR +K+IP +TL +A Sbjct: 426 YVSAKYGDEHVAQIITFGTMAAKAAVRDVGRAMNVPFAEVDRAAKMIPNQLHITLEEALR 485 Query: 477 AEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKH 536 L E + A+I MA K+EG+ R+A HA GVVI+ +TD+ PL E + Sbjct: 486 ISEGLREACQRQPRTDAMIKMALKVEGMPRHASTHAAGVVISGGPLTDYVPLQAGSE-RT 544 Query: 537 PVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKS 596 +TQ+ +E GL+K DFLGLRTL+I+ +L + K +D +P +D + Sbjct: 545 ALTQYSMEHLEAVGLLKMDFLGLRTLSIVERSLAWVKGLYGKE----IDFRKVPDNDPDT 600 Query: 597 FDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKH 656 + ML R ET +FQLES G++ ++K ++P FED+++++AL+RPGP++ + N+I KH Sbjct: 601 YAMLGRGETMGIFQLESSGVRRVLKEMKPSEFEDIVSVLALYRPGPME--FIPNYIQGKH 658 Query: 657 GREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKK 716 G + YP H SL+P+L TYGII+YQEQ+MQIA ++G++LG AD+LRRA+ KKK Sbjct: 659 GLAPVKYP-----HPSLEPILSDTYGIIVYQEQIMQIASAMAGFSLGEADLLRRAVSKKK 713 Query: 717 PEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKA 776 E + +QR+ F +G+ G +E A ++D++ +FA YGF ++H+AAY ++++QT WLKA Sbjct: 714 REVLDEQRAHFVKGSVSEGYTSEDANLVYDMIVRFADYGFPRAHAAAYGVLAFQTAWLKA 773 Query: 777 HYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIG 836 HYP FMA+++ + N K VDEC RMG+++LPPD+N F + G + +G+ Sbjct: 774 HYPIPFMASMLASVTGNQRKTAEYVDECRRMGIEVLPPDVNESGVTFTPVE-GAVRFGLA 832 Query: 837 AIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRA 896 AIK VG IEAI + R + F L DLC R D + +N+RVLE LI +GA + L HRA Sbjct: 833 AIKNVGTQAIEAIEKERRER-PFDSLLDLCRRVDLRVVNKRVLESLIQAGALESLPGHRA 891 Query: 897 ALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERET 956 + +L + ++AA + K Q ++FG + +E +P+ L+ ERE Sbjct: 892 QQLAALEETVEAALKWRKEREELQIELFGFDEVQNWDVE--LPDIRPYSTGEQLELEREL 949 Query: 957 LGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGI 1016 LGLYL+GHP++ +++E +G R ++ G VV+ + K+GN +G Sbjct: 950 LGLYLSGHPLDAVEEQLEP-LGLDRFIELGEAAEGAAAFIGARVVSLKPFTNKKGNAMGF 1008 Query: 1017 CTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDE 1075 ++DR R E ++F + L K + I+ V D K+ +V+ I E Sbjct: 1009 IEIEDRVMRAEGVVFPAVWKRCGDRLVKGGLAIIHATVQHQDED--FKLIIEDVVPIQE 1065 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 3/81 (3%) Query: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVS 1137 E+ + + I + + +L +L++ L H G + L+Y+R L T+R Sbjct: 1143 ERKRQRVYIKIIASREHPDVLEQLKKLLADHH-GQLDTVLFYEREQRS--LALSETYRTK 1199 Query: 1138 PSDRLLNDLRGLIGSEQVELE 1158 PS +L + + L+G V + Sbjct: 1200 PSPQLFSAIEQLLGQGAVIVR 1220 >UniRef50_C7H0A9 DNA polymerase III, subunit alpha n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H0A9_9FIRM Length = 1182 Score = 1216 bits (3147), Expect = 0.0, Method: Composition-based stats. Identities = 432/1206 (35%), Positives = 665/1206 (55%), Gaps = 87/1206 (7%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F HL VHS+YS++DG A+ LV +AA GM +LA+TD + G+V+FY GIKPI Sbjct: 3 FTHLHVHSEYSLLDGAARIRDLVAEAARFGMKSLALTDHGTMFGVVEFYKECKKQGIKPI 62 Query: 66 VGADFNVQC---DLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLI 122 +G + V ++ HL +L N GY+NL L+S A + G+ P ID + + Sbjct: 63 IGCEVYVARGSIEVQEKSPNHLILLVKNEEGYKNLIKLVSIANKEGF-YYKPRIDENLME 121 Query: 123 ELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPD-RYFLELIRTGRPDEESY 181 ++GLI LS G + +L GN + Y + + + ++LE+ G E+ Sbjct: 122 RFSKGLIALSACPAGRIPELILEGNYEEAKKTAIKYRDIYGEGNFYLEIQNHGLDKEQII 181 Query: 182 LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241 +++E G+ +VATND ++ D H++ + I G L D R + S Y++ Sbjct: 182 NRELTKMSEETGIKLVATNDSHYVKKEDAKMHDVLLCIKTGARLSDEVRMKFPSDDFYLK 241 Query: 242 SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTED-YLVKRAKEGL 300 SE+EM LF +A+ NT+E+A++CN LP F + T++ YL K EGL Sbjct: 242 SEDEMRMLFPGQTKAIENTLEVAEKCNFDFDFNSQHLPDFEVPEGETKEGYLRKLCCEGL 301 Query: 301 EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360 E+R + E ERLE EL I+ MG+ YFLIV +FI ++K G+PVGP Sbjct: 302 EKRHKNV----------TNELRERLEFELDTIHNMGYDEYFLIVHDFIHYAKTRGIPVGP 351 Query: 361 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420 GRGS AGSLV+Y L IT +DP++++LLFERFLNPERVSMPD D+DFC ++R +VI++V D Sbjct: 352 GRGSAAGSLVSYCLDITCVDPIKYNLLFERFLNPERVSMPDIDIDFCKDRRQEVIDYVID 411 Query: 421 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQ 480 YG D V+QI+TFGT+ AKA IRDVGR++ YG VDR++K +PP G+TL+ A + Sbjct: 412 KYGDDRVAQIVTFGTLKAKAAIRDVGRIMNAGYGEVDRLAKAVPPGLGVTLSDALKDS-N 470 Query: 481 LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQ 540 E+YE E+ K ++DMA +LEG+ RNAG HA GVVI+ I + P+Y ++G TQ Sbjct: 471 FKELYEEGEDSKEVVDMALQLEGMVRNAGTHAAGVVISKESIDSYVPIYKSDKG--FCTQ 528 Query: 541 FDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDML 600 + +E GL+K DFLGL+ LT+I M+ + ++ DD K ++++ Sbjct: 529 MTMTTIEELGLLKMDFLGLKNLTVIENCKNMVYRNHG----IKINFDDSNYDDSKVYELI 584 Query: 601 QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE 660 T +FQLES GM + +K L+PD ED+IA ++L+RPGP+ S DN+I K + Sbjct: 585 SSGNTEGIFQLESEGMTEFMKDLKPDSIEDIIAGISLYRPGPMDSK--DNYIFNKRHPDR 642 Query: 661 ISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM 720 I Y +H +LKP+L TYG ++YQEQVMQI + L+GY+ G AD++RRAM KKK +EM Sbjct: 643 IKY-----KHPALKPILSLTYGCLVYQEQVMQIVRELAGYSYGRADLVRRAMSKKKADEM 697 Query: 721 AKQRSVF------------------------------AEGAEKNGINAELAMKIFDLVEK 750 AK+R +F EG K GI E+ +IFD +E Sbjct: 698 AKEREIFLFGTENEYWAEENEKSCKISDAPVTDDEEVVEGCVKRGIPKEVGNEIFDEMES 757 Query: 751 FAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLK 810 FA Y FNKSH+AAYA++SYQT +LKAHYP EFMA+++ + N K+ + M ++ Sbjct: 758 FASYAFNKSHAAAYAVISYQTAYLKAHYPVEFMASLLASASGNDGKMARYIKNARDMNIE 817 Query: 811 ILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARN-KGGYFRELFDLCART 869 ILPPD+N F + EI++G+ +K VG+ + I++ R KG + ++ Sbjct: 818 ILPPDVNKSGVTFEARGN-EILFGLADVKNVGDNAADHIVKVRESKGKAYDNMYTFVQDM 876 Query: 870 DTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAE 929 D K+N+ VLE LI +GAF AA ++ DAL+ + K Q +F Sbjct: 877 DISKVNKSVLENLIRAGAFRDFEGTMAANLSIYNDALEQKKKSNKGITADQMSLFEEGEI 936 Query: 930 EPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPT- 988 E EQ Q + + + + E+E LG+YLT HP+ +Y + +E + V L +++P Sbjct: 937 EGEQFSQKIPNIPEFKDAQKMKFEKEALGMYLTTHPMKEYEQYLEGRITDV-LGNINPEA 995 Query: 989 ---------------ERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTD 1033 G+ + AGL+ + +VTK+G + L+D +GR+E+++F Sbjct: 996 DSDDEEDVASKSSAYREGQRVKLAGLITTVKTIVTKKGEMMAFANLEDMTGRMEMVIFPS 1055 Query: 1034 ALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQI 1093 +KY+++L++D ++I G++S D + +++ E + + + L ++ Sbjct: 1056 IYEKYRRILDEDMVIIAEGKLSSRDGVE-YNLLVSDIILPSEEKTPEDMVVKLRLLEKLN 1114 Query: 1094 DDQLLNRL--RQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIG 1151 ++ ++ +SLE G + LY + + +++ V + L +DL + G Sbjct: 1115 SEEANKKIEFLKSLESSEPGAMEFLLYIEDKVYKMKMQ-----GVRLTPELESDLEVIFG 1169 Query: 1152 SEQVEL 1157 E V++ Sbjct: 1170 KENVKV 1175 >UniRef50_A1AX67 DNA polymerase III, alpha subunit n=2 Tax=sulfur-oxidizing symbionts RepID=A1AX67_RUTMC Length = 1144 Score = 1215 bits (3143), Expect = 0.0, Method: Composition-based stats. Identities = 504/1157 (43%), Positives = 742/1157 (64%), Gaps = 32/1157 (2%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M+ FVHL S++S+ + L + L++K +GM ++A+TD +NL VKFY A Sbjct: 1 MTNSNFVHLHCQSEFSVENSLIRIPKLIEKVQEIGMNSIALTDESNLFTAVKFYQKATIA 60 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 IKPI GA N++ E + +L + GY NL+ LIS +Y +G + + Sbjct: 61 NIKPIFGARINIKDKEG--EFYSVLLLCQDYQGYLNLSELISLSYTQGRSFECVSVTQQQ 118 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 180 LI+ N+GLI+++ DV + L+ + F++ +RY+L + RT R +E Sbjct: 119 LIDHNQGLIMIATPIYSDVAKYLISNQMIEAKQKAEFWQTILVERYYLSVQRTSREFDEE 178 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 +LH V+LA + VVATNDV+F++ SDFDAHE R+ I G LDD +R +++S QQ++ Sbjct: 179 HLHLCVKLALELDIAVVATNDVQFLNESDFDAHEARICISQGGLLDDVRREKHFSNQQFL 238 Query: 241 RSEEEMCELFADIPEALANTVEIAKRCNVTVR-LGEYFLPQFPTG-DMSTEDYLVKRAKE 298 +S E+M ELF+D+PE L NT+EIAKRCNV + + +LP FP D++ E + + ++ Sbjct: 239 KSSEQMHELFSDLPEILENTLEIAKRCNVHFKLFKKNYLPDFPVPKDLTIERFFCEESEH 298 Query: 299 GLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPV 358 GL +RL L D Y +RL+ EL VI QMGFPGYFLIV +FI+WSK+N +PV Sbjct: 299 GLVQRLQNLKVDTL-------VYYQRLKFELNVIIQMGFPGYFLIVADFIRWSKENDIPV 351 Query: 359 GPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHV 418 GPGRGSGAGSLVAY L IT++DP+ +LLFERFLNPERVSMPDFD+DFC ++RD+VI++V Sbjct: 352 GPGRGSGAGSLVAYVLGITNVDPIRHELLFERFLNPERVSMPDFDIDFCTDRRDEVIDYV 411 Query: 419 ADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEA- 477 A YG VSQIIT+GTMAAK V+RDVGR+LGHPYGF D+ISK+IP D MTL KA Sbjct: 412 AKKYGYKKVSQIITYGTMAAKGVVRDVGRILGHPYGFSDKISKMIPNDLKMTLEKALSKP 471 Query: 478 ----EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCD-E 532 +L Y+++E V ALID++++LEG+ RN G HAGGVVIAP+KI+DF P+Y Sbjct: 472 EEGGSEELRARYDSEESVTALIDLSKQLEGLVRNVGTHAGGVVIAPSKISDFCPVYKGYG 531 Query: 533 EGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLD 592 E V+QFDK D+E GLVKFDFLGL LT+I+ +++I+ + N P+D+ A+PLD Sbjct: 532 ENDGVVSQFDKDDIEAIGLVKFDFLGLSNLTVIHKTVKLISAKGLSN--EPIDLDALPLD 589 Query: 593 DKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFI 652 DKK +++LQR +TT +FQLES GM+ +K+LQ D FED++A++AL+RPGPL +GMVD++I Sbjct: 590 DKKVYELLQRCDTTGIFQLESEGMRSYLKKLQADNFEDIVAMLALYRPGPLDAGMVDDYI 649 Query: 653 DRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAM 712 + KHG V++ H L+ +L+PT G+ LYQEQVM+ AQV++GY+LGGAD+LRRAM Sbjct: 650 NVKHG------AQVKYPHPMLEQILKPTNGVFLYQEQVMKSAQVMAGYSLGGADLLRRAM 703 Query: 713 GKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTL 772 GKKK EM++QRSVF +GA + GI+ + A +IFDL++KF+GYGFNKSHS AYA VSY T Sbjct: 704 GKKKDSEMSRQRSVFVKGAAEKGIDEKKANEIFDLIDKFSGYGFNKSHSVAYAYVSYHTA 763 Query: 773 WLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIV 832 WLK+H+PA FMAAV++ MDNT+++ + E +MGL + P++ Y F +ND+ + Sbjct: 764 WLKSHHPAPFMAAVLSGMMDNTDRISFTISEVRKMGLVVNGPNVCESNYEFSINDEKTVA 823 Query: 833 YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892 YG+GAIKGVG ++A++ RN G ++ LF+ C+R + + LN+R +E LI SGAFD LG Sbjct: 824 YGLGAIKGVGGALVDALVFERNTNGVYKSLFEFCSRIEKRYLNKRAIEALIYSGAFDVLG 883 Query: 893 PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952 RA+L+ + A++ A+Q GQ +F + E+ + E +Y S + + L Sbjct: 884 VDRASLIKTYPIAIRQAEQKQNDYFSGQKGLFSNI-EQHNEYEMNYLSASSFSFKERLQL 942 Query: 953 ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012 E+ LG Y HP ++Y +++ + K + K + L+ R TK G Sbjct: 943 EKSVLGYYFNDHPTDEYKTDLKHIGAILPSKIV--FRNNKDMRILALISELRYRATKSGG 1000 Query: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072 +I + T++D + L ++FT L L D ++++SG+++ + F ++ ++ + Sbjct: 1001 QIALITVEDGAKLLNAVIFTKTLGLVSDQLIVDEVVVISGKINKN-FRDQWQVVVDKIEN 1059 Query: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGA 1132 I E + YARG + L + + ++ + L ++ G PV + Y + R + Sbjct: 1060 IGEVKMSYARGFEVLLNAKH--QSIFDKFVKVLLDYK-GNCPVKISYMTDNLRGSMLLNK 1116 Query: 1133 TWRVSPSDRLLNDLRGL 1149 + V+P+ +L++ + L Sbjct: 1117 AYLVAPNQQLIDAVNAL 1133 >UniRef50_O51526 DNA polymerase III subunit alpha n=25 Tax=Borrelia RepID=DPO3A_BORBU Length = 1147 Score = 1213 bits (3138), Expect = 0.0, Method: Composition-based stats. Identities = 450/1172 (38%), Positives = 690/1172 (58%), Gaps = 45/1172 (3%) Query: 1 MS-EPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59 MS RF+HL VHSDYS++DG AK + ++ KA M +A+TD NL G +KFY Sbjct: 1 MSFRSRFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKK 60 Query: 60 AGIKPIVGADFNV--------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111 AGIKPI+G + + + D LG HL +LA N GY+NL L S +Y G+ Sbjct: 61 AGIKPIIGIEAYMAKTSKFLKKQDDLGKMSYHLILLAKNELGYKNLLKLTSISYLEGF-Y 119 Query: 112 AGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELI 171 P ID+D L + +EGLI S G + R +L + ++++ F + ++LEL Sbjct: 120 YRPRIDKDDLEKYSEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYLELQ 179 Query: 172 RTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRP 231 R G D++ V+ + G+P+ A ND +++ D A +I V I G D R Sbjct: 180 RHGIKDQDIVNERLVKYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSDENRL 239 Query: 232 RNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCN-VTVRLGEYFLPQF--PTGDMST 288 + + + Y++S+EEMCELF D+PEAL NTV IA++C+ + LP + P + Sbjct: 240 KMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVEFNTL 299 Query: 289 EDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFI 348 +YL EGL+ R L + +R EL VI MGF GYFLIV +FI Sbjct: 300 GEYLEHLTLEGLKFRYKNL----------TSKIKDRAFYELSVIIGMGFEGYFLIVWDFI 349 Query: 349 QWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCM 408 +++ DN +PVG GRGSGAGS+VAYAL+ITD+DPL+++LLFERFLNPER+SMPDFD+DFC Sbjct: 350 KFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDIDFCF 409 Query: 409 EKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG 468 E RD++I++V + YG D V+QIITFGT+ KAV++DV RVL P+ + ++K IP P Sbjct: 410 EGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIPDGPK 469 Query: 469 MTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPL 528 ++L + + L E + + K L++ A LEG+ R+A HA G+VI+ T +TD+ PL Sbjct: 470 VSLKEVLDDN-SLKECFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLTDYVPL 528 Query: 529 YCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAA 588 Y D + TQ+ +E GLVK DFLGL+TLT+I A +I + P I Sbjct: 529 YKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIR-----SVNPDFKIKN 583 Query: 589 IPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMV 648 IP +D K+F+ML + +VFQ ES GM+ ++K +PD ED+IAL AL+RPGP+Q + Sbjct: 584 IPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQ--FI 641 Query: 649 DNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADML 708 FI K G + I YP H LK VL PTYG+I+YQEQVM++A+++ G++LG AD+L Sbjct: 642 PQFIAAKKGVKRIKYP-----HPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADIL 696 Query: 709 RRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVS 768 RRAMGKKK +EM + + F GA + G + E+A +IF+L++ F+GYGFNKSH+AAY+L++ Sbjct: 697 RRAMGKKKEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIA 756 Query: 769 YQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDD 828 YQT +LKA+YP FMAA +T +++N +K+ ++E +G+ +L PDIN F V D Sbjct: 757 YQTAYLKANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDS 816 Query: 829 GEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAF 888 G I YG+ IK +G ++ II+ R K G + D R D K +N++ LE I SG F Sbjct: 817 G-ISYGLNGIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLF 875 Query: 889 DRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLA-EEPEQIEQSYASCQPWPEQ 947 D L +R L +L ++ + + +GQ +FG L ++P Q +Y + + + Sbjct: 876 DSLDQNRKTLFENLDHLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYS 935 Query: 948 VVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMV 1007 +L E+E LG Y++GHP++ Y K I+ + L D+ ++ ++ +G++ + +V+ Sbjct: 936 ELLGFEKELLGFYVSGHPLDPYKKAIDSFSSLNVLTDLA-AKKDSIVQFSGILNSVKVIQ 994 Query: 1008 TKRGN-RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMT 1066 TKR N ++ ++D G +++++FT++ ++Y+ L + ++ V G+++F+ + Sbjct: 995 TKRNNAKMAFGVIEDFKGAIDIVVFTESYERYRNFLLEGNVIGVVGRLTFNR--DKFSIV 1052 Query: 1067 AREVMDIDEAREKYARGLAISLTDRQIDD-QLLNRLRQSLEPH--RSGTIPVHLYYQRAD 1123 +V++I+ E + I + +++D QLLN L++S+ SG V+ Y + Sbjct: 1053 VEKVVNIERLSEYKINNIHIKFLNNKLNDLQLLNSLKESISNFEDNSGFSNVYFYLRENG 1112 Query: 1124 ARARLRFGATWRVSPSDRLLNDLRGLIGSEQV 1155 +L+ + P + L+ LR + E V Sbjct: 1113 KDLKLKMNSILNFVPDEDKLDKLRKCVIVEDV 1144 >UniRef50_C3WEY7 DNA polymerase III alpha subunit n=1 Tax=Fusobacterium mortiferum ATCC 9817 RepID=C3WEY7_FUSMR Length = 1138 Score = 1207 bits (3123), Expect = 0.0, Method: Composition-based stats. Identities = 426/1165 (36%), Positives = 683/1165 (58%), Gaps = 41/1165 (3%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 FVHL +H++YS++DG+ K + +A LGM A+AITD NL G ++FY GIKP Sbjct: 4 NFVHLHLHTEYSLLDGVGKIDDYLGRAKELGMQAIAITDHGNLFGALEFYKKARKKGIKP 63 Query: 65 IVGADFNVQCDLLGDE---LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL 121 I+G + V + D+ HL +LA +N GY+NL + S+++ RG+ P +D+++L Sbjct: 64 IIGMEAYVCERGMEDKEGRNFHLILLARDNEGYRNLLKISSESFIRGF-YYKPRVDKNFL 122 Query: 122 IELNEGLILLSGGRMGDVGRSLLR-GNSALVDECVAFYEEHFP-DRYFLELIRTGRPDEE 179 E +EGLI LS G++ R +L + + + Y + F + +F+E+ G ++ Sbjct: 123 KEHSEGLIALSACMQGEISRRILDMESEDKISSAIDEYVDIFGKENFFIEVQANGIKEQF 182 Query: 180 SYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQY 239 E+A+ L +VATND +++ + +I + + G L D KR R + + + Sbjct: 183 ELNEKLYEIAKQNNLKLVATNDTHYVNEGEHTLQDILICVQTGAKLSDEKRMRIETEELF 242 Query: 240 MRSEEEMC-ELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF--PTGDMSTEDYLVKRA 296 ++S E++ +L EA+ NT+ IA+RCNV + G + P + PT + E +L K Sbjct: 243 LKSREQVLGQLGEKYLEAVDNTIIIAERCNVDIEFGHFKFPDYKIPTCVKTIEAFLRKLV 302 Query: 297 KEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGV 356 GL +R ER+E EL +I +MG+ GYF++V +FI +++ + Sbjct: 303 YLGLSKRYPHGL---------TKSIVERVEYELGIIEKMGYAGYFVVVWDFIDFARRKNI 353 Query: 357 PVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIE 416 P+GPGRGS AGSL+AYAL IT LDPL+++L+FERFLNPER+SMPD D+D C E+R +VI+ Sbjct: 354 PIGPGRGSAAGSLIAYALGITQLDPLKYNLIFERFLNPERISMPDIDIDICQERRQEVID 413 Query: 417 HVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFE 476 +V + YG D V+QIITFGTM A+A IRDVGRVL P +D ++KL+P + T+ + E Sbjct: 414 YVIEKYGADKVAQIITFGTMKARAAIRDVGRVLNTPLSKIDAVAKLVPFNA--TIKQTLE 471 Query: 477 AEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKH 536 + + Y D E++ +ID++ K+E R+A HA G+VI +TD PLYCD + K Sbjct: 472 GVEEFRKQYLEDREIQKVIDISAKIENKVRHASVHAAGIVITKDPLTDTVPLYCDTKNKV 531 Query: 537 PVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKS 596 TQ+ ++E GL+K DFLGLR LT + ++ I + + + + IPL+ KK Sbjct: 532 VSTQYQMKELEDLGLLKMDFLGLRNLTNLQRTIDYIKEDLGEE----IRLEDIPLNSKKV 587 Query: 597 FDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKH 656 +++L R +T+ VFQ+ES G++ ++ +L+PD FED+IAL+AL+RPGPL SGMVD+FI+ K+ Sbjct: 588 YELLSRGDTSGVFQMESVGIRKILVKLKPDKFEDIIALLALYRPGPLGSGMVDDFINGKN 647 Query: 657 GREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKK 716 G EI YP H SL+ L+ TYG+ILYQEQVM+IA +++GY+LG AD+LRRAMGKK Sbjct: 648 GITEIKYP-----HPSLEQTLKETYGVILYQEQVMKIANIMAGYSLGEADLLRRAMGKKN 702 Query: 717 PEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKA 776 + M + R F + +NG + E A+++F+L++KFAGYGFNKSHSAAYAL++Y T + KA Sbjct: 703 VQIMEENREKFITRSIENGYSEEKALEMFELIDKFAGYGFNKSHSAAYALIAYWTAYFKA 762 Query: 777 HYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIG 836 HY + AA+MT++M + E + VD+ LK+ PD+N F V+ DG IV+ + Sbjct: 763 HYMKHYYAALMTSEMAHIEDIAYYVDDAKVHNLKLHLPDVNRATSKFIVDKDG-IVFSLA 821 Query: 837 AIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRA 896 AIK VGEG E I+E N+ G ++ L D RT LN++ LE LI++GA D L +R Sbjct: 822 AIKNVGEGVSEKILEEYNENGEYKNLEDFVVRTKKYGLNKKALESLILAGALDGLPGNRR 881 Query: 897 ALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERET 956 S+ + A++ K + I Q ++FG + + + +L E+E Sbjct: 882 QKFESVDKIIDYANRKLKEDDIQQMNLFG--EAKSSLGVFTLPQVTEYSLDELLSKEKEY 939 Query: 957 LGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKR-GNRIG 1015 LG Y + HP++ Y + I+ + + ++ + +++ G++ + +VTK G +G Sbjct: 940 LGFYFSAHPLDSYRRLIKVF-RLSPINEIKEEKTTQILKTCGILRDVKKIVTKNSGQIMG 998 Query: 1016 ICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSG--GLKMTAREVMDI 1073 + L+D ++ +LF ++Y +L + + + + G + D F G K+ R++ + Sbjct: 999 VFELEDYYDKISCVLFPKDYERYTHILLEGKPVYIEGSIQIDYFKGTENKKLIVRKLKFL 1058 Query: 1074 DEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGAT 1133 D+ + L I + + D + +RL++ L G PV + + + + + Sbjct: 1059 DDIVREKNLKLYILMVEE--DREKFSRLKEILNK-SVGETPVFFAIKDKNHKEIKK--SK 1113 Query: 1134 WRVSPSDRLLNDLRGLIGSEQVELE 1158 + ++P L+++ L+G E+V ++ Sbjct: 1114 YNITPDKIFLDEIVELMGEERVTIK 1138 >UniRef50_Q11YX8 DNA polymerase III, alpha subunit n=3 Tax=Bacteria RepID=Q11YX8_CYTH3 Length = 1194 Score = 1207 bits (3122), Expect = 0.0, Method: Composition-based stats. Identities = 422/1210 (34%), Positives = 656/1210 (54%), Gaps = 86/1210 (7%) Query: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 P F HL VHS +S++DG A LV KA M ALA+TD N+ G+ +F IK Sbjct: 2 PDFAHLHVHSQFSLLDGAASIKGLVGKAVKNEMKALALTDHGNMHGIFQFVAEAVKNNIK 61 Query: 64 PIVGADFNVQCDLLG--------DELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPI 115 PIVG +F + D D H +LA N GY+NL L S Y G P Sbjct: 62 PIVGCEFYLVEDRFKKNFTKDNKDVRYHQLLLAKNPEGYKNLIKLCSLGYIEGQYGKYPR 121 Query: 116 IDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGR 175 ID++ +++ ++GLI + +V R++L ++ ++ + F + Y++EL R Sbjct: 122 IDKELILQYHKGLIATTCCLGAEVPRTILAKGEEAGEKAFKWWLDLFGEDYYVELQRHDI 181 Query: 176 PDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP------- 228 ++ ++LA +P++A+ND ++D D +AH+I + I+ G P Sbjct: 182 KEQNIVNEVLIKLARKYQVPIIASNDSHYVDQKDSNAHDILLCINTGEKQSTPTMKDFSD 241 Query: 229 -------KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF 281 +R + Q Y +++EEM LF+DIPEA+ NT++I + + + LP + Sbjct: 242 DESMMKGRRFAFANDQFYFKTKEEMSTLFSDIPEAIDNTMQIVDKVEILKLKQDILLPNY 301 Query: 282 PTG--DMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPG 339 + ++YL EG R + PE ERL+ EL I MGF G Sbjct: 302 EIPSTFLDQDNYLQHLTYEGARNRY----------VDVTPEIKERLDFELHTIRTMGFAG 351 Query: 340 YFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSM 399 YFLIV +FI ++ GV +GPGRGS AGS VAY + IT++DP++++LLFERFLNP+R SM Sbjct: 352 YFLIVQDFINKGREIGVLIGPGRGSAAGSAVAYCIGITNIDPIKYNLLFERFLNPDRKSM 411 Query: 400 PDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRI 459 PD D DF E R +VI++V + YG+ V+QI+T+GTMAAK I+DV RVL P + + Sbjct: 412 PDIDTDFDDEGRQKVIDYVVEKYGKKQVAQIVTYGTMAAKMSIKDVARVLDLPLQESNAL 471 Query: 460 SKLIPPDPGMTLA--------------------------KAFEAEPQLPEIYEAD-EEVK 492 +KL+P PG+ L + E +L E+ + + Sbjct: 472 AKLVPDKPGIELNWVMKGPMKASDKKNEKDKTLTEELTPEDIENVKKLREMLDDEGTLAS 531 Query: 493 ALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLV 552 ++ A LEG R G HA G++IAP + D P++ ++ + VTQFD +E AG++ Sbjct: 532 DVLKEALILEGSVRGTGIHAAGIIIAPKDLYDIIPVFTAKDSELLVTQFDGKVIEDAGVI 591 Query: 553 KFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLE 612 K DFLGL+TLTII AL+MI + +DI IPLDD K+F++ Q+ ET A FQ E Sbjct: 592 KMDFLGLKTLTIIRDALKMIEENHG----IKIDIDYIPLDDAKTFELYQKGETNATFQFE 647 Query: 613 SRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHES 672 S GM+ + L+PD FED+IA+ AL+RPGP++ + FI RK G+EEI Y Sbjct: 648 SAGMQKHLINLKPDKFEDLIAMNALYRPGPIE--YIPKFIQRKLGKEEIVYDL-----PE 700 Query: 673 LKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAE 732 ++ L TYGI +YQEQVM ++Q L+G+T G AD+LR+AMGKK + K + F EGA Sbjct: 701 MEEYLGDTYGITVYQEQVMLLSQKLAGFTKGDADVLRKAMGKKDRATLDKMKGKFIEGAV 760 Query: 733 KNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMD 792 G++ ++ K++ E FA Y FNKSHS YA V+YQT +LKA+YP+E+MA+V+T ++ Sbjct: 761 AKGLDPKVCEKVWTDWEAFAQYAFNKSHSTCYAFVAYQTGYLKANYPSEYMASVLTHNLS 820 Query: 793 NTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEA 852 N +K+ ++EC RMG+ +L PD+N Y F VN +G+I +G+GAIKGVGEGP++AI++ Sbjct: 821 NFDKISFFMEECQRMGMAVLGPDVNESSYQFSVNSNGQIRFGMGAIKGVGEGPVQAIVDE 880 Query: 853 RNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGP-HRAALMNS--------LG 903 R G F++ FD +R + + ++++ E L ++GA D HRA N L Sbjct: 881 RKANGPFKDFFDFVSRVNLRAVSKKTFESLALAGALDYFTELHRAQYFNVAERETITFLE 940 Query: 904 DALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTG 963 A++ + + Q+ +FG + C+ W L E+E +G Y++G Sbjct: 941 KAIRYGNAFQTEDDSNQSSLFGDSSSAKP-APPKITPCEEWGNIEKLKKEKEIVGFYISG 999 Query: 964 HPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRS 1023 HP++Q+ EI+ + L+++ + +GK +T AG+V V +K G + T++D S Sbjct: 1000 HPLDQFKLEIDNFCNC-PLENVMSSPQGKDLTVAGIVTKVNVRQSKNGKPFVLFTIEDYS 1058 Query: 1024 GRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDD-FSGGLKMTAREVMDIDEAREKYAR 1082 G L++ LF + K+ + L + G + G L + + R K + Sbjct: 1059 GSLDLALFGEDYLKHAHFINIGEFLFMKGSLKPKWGREGELDFKITTTQLLADVRAKLCK 1118 Query: 1083 GLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLR-FGATWRVSPSDR 1141 + IS+ QI+ + + + + H+ G+ ++L + ++ F ++RV P++ Sbjct: 1119 SVNISVNLDQINAITVVEIDRIVSEHK-GSCLLYLTLTKNTNEHTVKTFSRSYRVDPNNV 1177 Query: 1142 LLNDLRGLIG 1151 L++L L G Sbjct: 1178 FLSELNKLEG 1187 >UniRef50_A1ZEC3 DNA polymerase III alpha subunit n=2 Tax=Bacteroidetes RepID=A1ZEC3_9SPHI Length = 1403 Score = 1206 bits (3121), Expect = 0.0, Method: Composition-based stats. Identities = 433/1181 (36%), Positives = 670/1181 (56%), Gaps = 60/1181 (5%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 F HL VHS +S++ A L+K A GMPA+A TD N+ K G G +K Sbjct: 239 PFSHLHVHSQFSILQSTASVGGLIKFAKEHGMPAIAFTDHGNMHAAFKAVGEGAKNDVKV 298 Query: 65 IVGADFNVQCDL--------LGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPII 116 I+G +F V + D + +LA + Y L L S Y GY A P I Sbjct: 299 IIGCEFYVAQERTKTKFTKSDRDRRFNQVLLAKDQEAYHRLAKLSSLGYIEGYYAGFPRI 358 Query: 117 DRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRP 176 +D + E +EGLI L+G G++ +L +E ++ F D +++E++R G+ Sbjct: 359 GKDLIEEYHEGLIALTGNLQGEIPDLILNQGEHEAEEAFKWWHNLFGDDFYVEIMRHGQE 418 Query: 177 DEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPK------- 229 +EE ++ A G+ +ATN+V +I D DAH+ + + PK Sbjct: 419 EEERVNEVLLKFAAKYGVKPIATNNVYYIGDEDADAHDSLLCVKGADKKSTPKMFTPDIK 478 Query: 230 ----RPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF--PT 283 R + + YM++ EEM ELF+DIP AL T EI +C+ + +P + P+ Sbjct: 479 RRNLRYGMPNEEYYMKTPEEMNELFSDIPIALETTQEIVDKCSPIKLKRDILMPVYEMPS 538 Query: 284 GDMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLI 343 + +DYL EG +R + E ERL+ EL +I MGFPGYFLI Sbjct: 539 EFATQDDYLRHLTYEGATKRYGEI----------TEEIRERLDHELNIIKSMGFPGYFLI 588 Query: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 V +FI ++D GV VGPGRGS AGS VA+ + IT++DP++++LLFERFLNPERVSMPD D Sbjct: 589 VQDFINAARDMGVFVGPGRGSAAGSAVAFCIGITNIDPIKYNLLFERFLNPERVSMPDVD 648 Query: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 +DF E R I +V D YG++ V+QIIT+GTMAAK I+DV RVL P ++++K + Sbjct: 649 IDFDDEGRQDAINYVIDKYGKNQVAQIITYGTMAAKMAIKDVARVLELPIPDSNKLAKYV 708 Query: 464 PPDPGMTLAKAFEAEPQLPEIYEADE--EVKALIDMARKLEGVTRNAGKHAGGVVIAPTK 521 P PG L AF +L ++ E ++ A+ LEG R G HA GV+IAP Sbjct: 709 PDKPGTKLKDAFAEVQELKDVLARPEGDLENQVLRQAKILEGSVRGTGIHAAGVIIAPDD 768 Query: 522 ITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGE 581 + + P+ ++ VTQFD +E AG++K DFLGL+TLT+I AL MI K N + Sbjct: 769 LLKYIPVCTSKDADLLVTQFDGKVIEDAGMLKMDFLGLKTLTVIKDALRMIKK----NYD 824 Query: 582 PPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPG 641 +D+ IPLDD+ + ++ Q ET FQ ES GM+ +K+L+P ED+IA+ AL+RPG Sbjct: 825 IDIDMDKIPLDDQATLELYQNGETVGTFQFESEGMRMYLKQLKPTNIEDLIAMNALYRPG 884 Query: 642 PLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYT 701 PLQ + NFI+RKHG EE+ YP H+ L+P+L TYGI++YQEQ+MQ AQ+L GY+ Sbjct: 885 PLQ--FIPNFINRKHGTEEVEYP-----HDLLEPILNNTYGIMVYQEQIMQTAQILGGYS 937 Query: 702 LGGADMLRRAMGKKKPEEMAKQRSVFAEGAEK-NGINAELAMKIFDLVEKFAGYGFNKSH 760 LGGAD+LRRAMGKKK EEM +Q +F +GA++ +GI E + K+F+++++FA YGFN+SH Sbjct: 938 LGGADLLRRAMGKKKLEEMDRQEVIFMKGAKEIHGIPEEKSRKVFEVMKEFAKYGFNRSH 997 Query: 761 SAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGL 820 SAAY++V+YQT +LKA+YP+E+MA+V+T +M+N +KV +DE MGL+IL PD+N Sbjct: 998 SAAYSVVAYQTAYLKANYPSEYMASVLTHNMNNIDKVTFFIDETKNMGLQILGPDVNESE 1057 Query: 821 YHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLE 880 F VN G+I +G+GA+KG G+ +E IIE R K G F+++FD R + + +N++ E Sbjct: 1058 QSFTVNPVGQIRFGLGAVKGTGDAAVENIIEERKKNGPFKDMFDFARRVNLRTVNKKSFE 1117 Query: 881 KLIMSGAFDRLGP-HRAALMNS--------LGDALKAADQHAKAEAIGQADMFGVLAEEP 931 +GAFD LG HRA + L +K + + K + +FG Sbjct: 1118 CFAQAGAFDNLGKLHRAQFFAAMPNDTATFLERIIKFGNAYQKEIENAKTSLFGASG-AV 1176 Query: 932 EQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERG 991 + +PW + L+ E+E +G Y++GHP+++Y ++++ G V L + + Sbjct: 1177 TIAQPKVPYTEPWSQLEKLNREKEVVGFYMSGHPLDRYRAGMKKF-GAVALDKIESFQH- 1234 Query: 992 KVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVS 1051 + +T A +V + TK G +++D S +++ LF ++ + L+E +++++++ Sbjct: 1235 QEVTVACIVTKKELRQTKNGKPFTSFSIEDYSTSMDLALFGESHETLSDLIEVNQLILLT 1294 Query: 1052 GQVSFDDFS-GGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRS 1110 G+V S ++ ++ ++E +EK RGL I + +++D+L+ ++ + + + Sbjct: 1295 GKVQKRYGSEDRYELRTSQIKPLEEMQEKMCRGLVIQVDIAKLNDELMEKMEKVAQENTG 1354 Query: 1111 GT-IPVHLYYQRADARARLRF-GATWRVSPSDRLLNDLRGL 1149 + + +Y + + ++V +RL L Sbjct: 1355 EHELKIWVYDLQEQPTMMVELNSQKYKVQADERLQQKFESL 1395 >UniRef50_B5VUX8 DNA polymerase III, alpha subunit n=2 Tax=Arthrospira RepID=B5VUX8_SPIMA Length = 1219 Score = 1205 bits (3118), Expect = 0.0, Method: Composition-based stats. Identities = 444/1220 (36%), Positives = 693/1220 (56%), Gaps = 93/1220 (7%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FV L +HSDYS++DG ++ LV +A LGMPA+A+TD + G ++ GIKPI Sbjct: 3 FVGLHIHSDYSLLDGASQLPQLVSRAVELGMPAIALTDHGVMYGAIELIKICRSKGIKPI 62 Query: 66 VGADFNV-----QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG----PII 116 +G + V G + H VLA N GY+NL L + ++ +G+ G P I Sbjct: 63 IGNEMYVLNADVTVQQRGIKKYHQVVLAKNTQGYKNLVKLTTISHLKGFQGKGIFARPCI 122 Query: 117 DRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRP 176 +++ L E +EGLI+ S G+V +++L+ + + V +Y+ F D Y+LE+ G P Sbjct: 123 NKELLEEYHEGLIVTSACLGGEVPQAILQRRMDIARQTVEWYKRVFGDDYYLEIQDHGSP 182 Query: 177 DEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSP 236 ++ A V+LA + +VATND FI +D +AH+ + I+ + + R R YS Sbjct: 183 EDRIVNVALVQLAREFEVKIVATNDSHFISCNDVEAHDALLCINTQKLITEDNRLR-YSG 241 Query: 237 QQYMRSEEEMCELFAD------IPEALANTVEIAKRCN-VTVRLGEYFLPQFPTGDMSTE 289 +Y++S EEM +LF D I EA+ANT+E+A++ T LGE +P +P T Sbjct: 242 TEYLKSAEEMMQLFRDHLPDEVIKEAIANTLEVAEKVEPYTGILGEPRIPDYPIPPNHTA 301 Query: 290 D-YLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFI 348 D YL + A EGL++RL + + R + +P Y ERLE EL+++ +MGF YFL+V ++I Sbjct: 302 DTYLEEIAWEGLKKRL-----NAQGRSEIKPVYRERLEYELKMMQKMGFATYFLVVWDYI 356 Query: 349 QWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCM 408 + ++DN +PVGPGRGS AGSLVAYAL+IT++DP+ LLFERFLNPER SMPD D DFC+ Sbjct: 357 KHARDNHIPVGPGRGSAAGSLVAYALQITNIDPVHHGLLFERFLNPERKSMPDIDTDFCI 416 Query: 409 EKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG 468 ++RD++I++V YG + V+QIITF M +KAV++DV RVLG PY D+++K+IP G Sbjct: 417 DRRDEMIKYVTSKYGEEKVAQIITFNRMTSKAVLKDVARVLGIPYSKSDQMAKMIPVSRG 476 Query: 469 MTLA-----KAFEAEPQLPEIYEAD--------------EEVKALIDMARKLEGVTRNAG 509 P+ + Y+ D V+ +DMA ++EG + G Sbjct: 477 KPTKLKVMISDQSPSPEFKQAYDNDFVPIKNDAGEEVGTIAVRQWVDMAIRIEGTNKTFG 536 Query: 510 KHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWAL 569 HA GVVI+ + + PL + +G +TQ+ D+E GL+K DFLGL+ LTII L Sbjct: 537 VHAAGVVISKQPLDEIVPLQRNNDGS-VITQYFMEDIEALGLLKMDFLGLKNLTIIQRTL 595 Query: 570 EMINKRRAKNGEP---------PLDI------AAIPLDDKKSFDMLQRSETTAVFQLESR 614 I++ + +P +DI +P D K++ +L+R + +FQLES Sbjct: 596 NYISQNHHLDIDPYNLAADERKAMDILAKGAVKKMPEDVAKTYKILERGDLEGLFQLESS 655 Query: 615 GMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLK 674 GM+ ++K L+P ED+ +++AL+RPGPL +G++ FI+RKH RE I Y +H+ L+ Sbjct: 656 GMRQIVKDLKPSSIEDISSILALYRPGPLDAGLIPQFINRKHKREPIRY-----EHKLLE 710 Query: 675 PVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKN 734 P+L TYGI++YQEQ+M++AQ L+GY+LG AD+LRRAMGKKK EM K R F +GA +N Sbjct: 711 PILNETYGILVYQEQIMKMAQDLAGYSLGQADLLRRAMGKKKASEMQKHRETFIDGATRN 770 Query: 735 GINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNT 794 G+ +A +FD + KFA Y FNKSHS AY ++YQT +LKA+YP E+MAA++T + NT Sbjct: 771 GVPQNIAEHLFDQMVKFAEYCFNKSHSTAYGYITYQTAYLKANYPTEYMAALLTENSGNT 830 Query: 795 EKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARN 854 +KV ++ C +G+ ++PPDIN F ++ IV+G+ AIK VG+G IE ++ R Sbjct: 831 DKVRAYIESCKHLGIDVVPPDINRSNVDFTPIEN-RIVFGLSAIKNVGDGAIEHLLSVRE 889 Query: 855 KGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAK 914 +GG FR L DLC R + + +N R LE LI SGAFD L +R + L + A AK Sbjct: 890 EGGPFRSLADLCDRINLQMVNSRALESLIKSGAFDSLHANRKQSIEYLNIVIPWAQDRAK 949 Query: 915 AEAIGQADMFGVL-----AEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQY 969 IGQ ++F ++ E ++ + + L E+E LG Y++ HP+ Sbjct: 950 NREIGQTNLFDLVNYATTESNSPSGEPAFPKGDDYAPKDKLQFEKELLGFYVSDHPLKSL 1009 Query: 970 LKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVM 1029 L V L + + + A +++ + +TK+G+R+ L+D +G+++ + Sbjct: 1010 LDSGI-LPDNVTLDKLPEQKSKAAVKVAVILINIKPHLTKKGDRMAFLLLEDLTGQIDAV 1068 Query: 1030 LFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEARE----------- 1078 +F + + QQ L+++ +++V G+V D ++ + DE + Sbjct: 1069 VFPSSYEAVQQELKENAVVVVEGKVEKRD--DQTQIIVDAIKSADELIKPNNQPGSPSQL 1126 Query: 1079 ----KYARGLAISLTDRQIDD-QLLNRLRQSLEPHRS----GTIPVH-LYYQRADARARL 1128 + + + LT +I + L L+ LE +RS G +P+ + + + + Sbjct: 1127 PPNLAASSVIQLCLTPEEICQLERLQILKGILEEYRSNQGLGRVPIQAIVDGQVSPKPLV 1186 Query: 1129 RFGATWRVSPSDRLLNDLRG 1148 RFG+ + V + ++ L+ Sbjct: 1187 RFGSQFWVENQEAIVQQLKT 1206 >UniRef50_O83675 DNA polymerase III subunit alpha n=5 Tax=Treponema RepID=DPO3A_TREPA Length = 1170 Score = 1205 bits (3117), Expect = 0.0, Method: Composition-based stats. Identities = 443/1185 (37%), Positives = 646/1185 (54%), Gaps = 65/1185 (5%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M+ FVHL VHS+YS++DG + LV+ A +LG ALA+TD N+ G + F Sbjct: 1 MARMSFVHLHVHSNYSLLDGASSLQRLVRTAKSLGQEALALTDHGNMFGALHFQKVCSAE 60 Query: 61 GIKPIVGADFNVQC--------DLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAA 112 GIK I+G + V +G HL VLA N TGY+NL +L SKAY G Sbjct: 61 GIKAIIGCELYVAPESRFDRSEHTIGRRYYHLIVLAKNETGYRNLMVLSSKAYIEGM-YY 119 Query: 113 GPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELI 171 P +D + L + EGLI LS G + LL+G +E Y F D YF+E+ Sbjct: 120 KPRVDDELLAQHAEGLICLSSCLAGQLPYLLLQGRKREAEEHARKYRALFGVDNYFIEVQ 179 Query: 172 RTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRP 231 G +E+ +ELA G+P+V TNDV + + D A +I + I DP R Sbjct: 180 DHGLDEEKKVAPLLIELACRLGIPLVVTNDVHYAEQEDSVAQDILLCIGTKKNRSDPNRL 239 Query: 232 RNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLP--QFPTGDMSTE 289 + + + Y++S E+M +LF PE + NTV IA+RCNV + LP Q P S E Sbjct: 240 KFKTDEFYLKSSEKMAQLFPHYPEMVLNTVRIAQRCNVRIPQPGPLLPLYQIPHEFSSKE 299 Query: 290 DYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQ 349 Y+ GL +R A + E R + EL VI +M F GYFLIV +FI Sbjct: 300 HYIRHLVHRGLYDRYAVV----------SEEIKARADYELDVIVRMDFVGYFLIVWDFIT 349 Query: 350 WSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCME 409 W+K++ +PVGPGRGSGA S+VAYALKITD+DPL + LLFERF+NPER+SMPDFD+DFC E Sbjct: 350 WAKEHDIPVGPGRGSGASSIVAYALKITDIDPLRYKLLFERFMNPERISMPDFDIDFCFE 409 Query: 410 KRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGM 469 +R +VIE+V YG D V QIITFGT+ KA IRDVGRVL P V I+KL+P DP + Sbjct: 410 RRQEVIEYVRARYGNDNVGQIITFGTLKPKAAIRDVGRVLDIPLSEVLMITKLMPDDPKL 469 Query: 470 TLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLY 529 T KA+E+E QL ++ + + L +A KLE RN HA G+VI T +TD+ PLY Sbjct: 470 TFKKAYESE-QLAQM-KQEPRYAELFQIAEKLEDTNRNTSLHAAGIVIGKTALTDYVPLY 527 Query: 530 CDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAI 589 D + TQF +E GLVK DFLGL+TLT+I ++ ++ K I+ I Sbjct: 528 KDSKTGKISTQFGMDLIEDCGLVKMDFLGLKTLTLIQRTQNLVRRKGGKYTT--FSISDI 585 Query: 590 PLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVD 649 D +F ML ++ AVFQ ESRGM+ ++KR +P ED+IAL AL+RPGP+ +D Sbjct: 586 SDQDPTTFSMLAEGKSAAVFQFESRGMQGILKRAKPSKMEDLIALNALYRPGPMA--FID 643 Query: 650 NFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLR 709 +I+ K +I YPD L+ +L TYG+I+YQEQVMQ+AQ ++G++LG AD+LR Sbjct: 644 QYIESKRDPGKIKYPD-----PCLEDILSETYGVIVYQEQVMQVAQRIAGFSLGEADILR 698 Query: 710 RAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSY 769 RAMGKKK M +++ FAE AEK G + + A IF+++ FAGYGFNKSH+ AY++V+Y Sbjct: 699 RAMGKKKLAVMQEKKKEFAERAEKQGFDKKHAENIFEILIPFAGYGFNKSHATAYSVVAY 758 Query: 770 QTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDG 829 QT +LKA++PAEFMAA ++ ++++ EK+ + E +MGL I PD+N+ +F V + G Sbjct: 759 QTAFLKANFPAEFMAANLSNEINSAEKLPLYMAEAEKMGLSIQKPDVNASEPYFSVCE-G 817 Query: 830 EIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFD 889 IVYG+ IKG+GE + + R + G + ++ R LN++ E +I +G FD Sbjct: 818 CIVYGLLGIKGLGEQVAFDVFDERIRNGPYTSFVEVLDRVPATSLNKKNAEIMIKAGCFD 877 Query: 890 RLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVV 949 R G RA+L L DA+K + + QA +F + E E ++ + W ++ Sbjct: 878 RFGVTRASLTAHLDDAMKYVARKKAVTSSRQASLFDE-TDLGECSEYTFPVMEEWSQRER 936 Query: 950 LDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTK 1009 L E+E +G Y++GHP+++Y I + L + G++ A TK Sbjct: 937 LRIEKELMGYYISGHPLDEYRSVIGEKA-TLDLGHIENARSENKYLIVGVLNAIHPYTTK 995 Query: 1010 RGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTARE 1069 G + + +D G +++++F ++++ + I+ + G V F Sbjct: 996 SGKNMAFGSFEDLHGSVDIVVFPVLWEEHRAQFLPETIMGLVGTVDFSK--ETPAFLVDS 1053 Query: 1070 VMDIDEAREKYARG--------------------------LAISLTDRQIDDQLLNRLRQ 1103 V+D+++ R + + I ++ L + Sbjct: 1054 VIDLEQLRFAQVKTILAGSEHRRVSSGEKTPLQKRGVSQEVHIEVSSHVRAHAQFKSLYE 1113 Query: 1104 SLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRG 1148 L H G+ V L+ D R + + + +VS ++ L+G Sbjct: 1114 ILSAHTGGSGEVFLHMHVDD-RTYVVYVPSCKVSATEVFAQQLKG 1157 >UniRef50_C7MKU1 DNA-directed DNA polymerase III PolC n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MKU1_CRYCD Length = 1165 Score = 1204 bits (3115), Expect = 0.0, Method: Composition-based stats. Identities = 430/1174 (36%), Positives = 639/1174 (54%), Gaps = 43/1174 (3%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAG----HGAG 61 FVHL H++YS++DG +V++AA LGMPA+AITD + G+ + A G Sbjct: 3 FVHLHNHTEYSLLDGATHVKDMVQRAADLGMPAVAITDHGVMSGVPELEDACISVEKETG 62 Query: 62 IK--PIVGADFNVQCDLL-----GDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGP 114 IK PI G + D L H+ +LA N GY NL L+S+++ + P Sbjct: 63 IKVKPIFGCEIYFTTDDELKREGKPRLYHMILLAKTNEGYHNLVKLVSESHVDNF-YYKP 121 Query: 115 IIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRT 173 L ++GLI S G + R L G F P ++LEL Sbjct: 122 RTTFAMLKRYSKGLIGTSACIAGIIPRLLDLGQYEDAMSWARKLAGLFEPGDFYLELQDQ 181 Query: 174 GRPD-----EESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228 G + ++A+ GL +ATND ++ D A +I + I G +DD Sbjct: 182 GVVTDLGHTQHELNVQLSQIAKECGLKTIATNDFHYLTHDDAKAQDIILCIGTGSQVDDT 241 Query: 229 KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMST 288 R R + Q YM++EEEM AD PEA NTVEIA++CNV + + LP+FP + T Sbjct: 242 NRMRFSNDQFYMKTEEEMRAALADFPEACDNTVEIAEKCNVVLE-RDSILPRFPVPEGET 300 Query: 289 E-DYLVKRAKEGLEERLAFLFPDEEERLKR-RPEYDERLETELQVINQMGFPGYFLIVME 346 E + K+ + GL R + L + RPE ER E E QVI + GFP YFLIV E Sbjct: 301 EVSWFRKQCESGLVRRYGEGKVQTFQELAQVRPEVAERYEHEAQVIIKQGFPAYFLIVQE 360 Query: 347 FIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 406 +I W+KD+G+ VGPGRGS AGS+V YA+ ITDLDPL + LLFERFL+ ERV MPD DVDF Sbjct: 361 YIMWAKDHGIGVGPGRGSAAGSIVTYAMGITDLDPLPYGLLFERFLSEERVEMPDIDVDF 420 Query: 407 CMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPD 466 + R VI+HV + YG D +S +ITFG + AK +RD RVLG+PYG DR+ KLI + Sbjct: 421 DDQHRQDVIDHVREFYGEDHISGVITFGKLQAKNAVRDAARVLGYPYGVGDRLCKLIGNE 480 Query: 467 PGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 G+T+ +A E P L YE++ + +A+ID A+ +EG R G HA +I + D Sbjct: 481 LGITIQQALETNPDLKAAYESEADAQAVIDAAQSIEGHVRGEGVHACATIICRDPLADHV 540 Query: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586 P+ D +G +TQ+D GL+K DFLGLRTL +I+ A + + R + +D Sbjct: 541 PVKRDTKGGGIITQYDGHYTPELGLLKMDFLGLRTLGVISRACDNVKARHGID----IDP 596 Query: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 +AI L+D ++F ++ +FQ+E L R++P F D++A +AL RPGPLQ+G Sbjct: 597 SAISLEDPEAFKLMCGGNMDGLFQVEGNLYVTLFARMKPRRFSDIVASIALNRPGPLQNG 656 Query: 647 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 VD+++DR G+ ++ Y D + L+P+LE TYG I+YQEQ+MQI+ +SG++ G AD Sbjct: 657 FVDDYVDRVSGKSQVVYYD-----DRLRPILEETYGTIVYQEQLMQISMRMSGFSAGKAD 711 Query: 707 MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 LR+AMGKKK E M + +GA NG + E++ KI+ EKFA Y FNKSHSA YA+ Sbjct: 712 KLRKAMGKKKLEVMKALEEDWNQGAVDNGYSLEVSKKIWSDAEKFAQYAFNKSHSACYAV 771 Query: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 + +T +LKAHYP EFMAAV+++ + N +K++ + C G+++LPPDINS F Sbjct: 772 LVMRTAYLKAHYPNEFMAAVLSSYLGNNDKLIHYIASCAASGIQVLPPDINSSNVEFTPT 831 Query: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 D+G + +G+ ++GVGE +E II R+ G + L D R D++ NR+ LE LI +G Sbjct: 832 DEG-VRFGLAGVRGVGEKVVEEIIAERDTHGPYTSLHDFVHRLDSRCYNRKTLEALIKAG 890 Query: 887 AFDRLGPHRAALMNSLGD--ALKAADQHAKAEAIGQADMFGVLAEEPE---QIEQSYASC 941 AFD G R LM + + L++A + K GQ MF + + + E Sbjct: 891 AFDSTGYTRKQLMYFIDETPLLESAAKRQKDRNCGQTSMFDLFGDSDDSGFSEETPAPDG 950 Query: 942 QPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERG-KVITAAGLV 1000 W ++ +L E++ L +Y++ HP+ Y + + + RL D+ E K T G++ Sbjct: 951 VEWDKRTLLAFEKDILKIYVSDHPLRPYAGLLSK-LSKFRLGDLADREHDIKNATFVGMI 1009 Query: 1001 VAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFS 1060 + +TK+G R+ TL+D +G +E + F + + + +D I+ V G+ D + Sbjct: 1010 SSVVTKLTKKGTRMATFTLEDTTGHVEAVCF--KYEDFANAIAEDTIVKVKGKYEVGDRN 1067 Query: 1061 GGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ 1120 + + DE + R +A+S+ R + + L Q L + G + L+ Sbjct: 1068 QLMAFEVERLDLADEPTDVAPRTVALSVMQRDLSQSNMQFLTQILRKY-PGQDSLVLFVS 1126 Query: 1121 RADARARLRFGATWRVSPSDR-LLNDLRGLIGSE 1153 + D R + R V D+ L +L+ L G + Sbjct: 1127 QHDGR-KYRANLPLTVDSHDKALFGELQSLFGRK 1159 >UniRef50_B8GWS6 DNA polymerase III subunit alpha n=75 Tax=Alphaproteobacteria RepID=DPO3A_CAUCN Length = 1143 Score = 1203 bits (3112), Expect = 0.0, Method: Composition-based stats. Identities = 464/1160 (40%), Positives = 672/1160 (57%), Gaps = 39/1160 (3%) Query: 1 MSEPR---FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAG 57 MS+ FVHLRV S YS+++G K + K AA MPA + D NL G +++ Sbjct: 1 MSDAEGQGFVHLRVRSAYSLLEGAIKADQIGKLAAEAKMPAAGLADRANLFGALEYSSYA 60 Query: 58 HGAGIKPIVGADFNVQCDLLGD-----ELTHLTVLAANNTGYQNLTLLISKAYQRGYGAA 112 AG++PI+G V G L +LA N GY NL+ L S AY Sbjct: 61 KDAGVQPIIGCAIPVVGIGGGPTERWARAPTLMLLAQNERGYLNLSELSSIAYLDSAELP 120 Query: 113 GPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172 P++ + E +EGLILLSGG G V G +A +A F DR+++EL R Sbjct: 121 EPVVPWAKVAEHSEGLILLSGGTDGPVDALFAAGKTAEASAALAEMHRVFGDRFYVELQR 180 Query: 173 TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 G P + + V A +P+VATNDV F +DAH+ + I DG + +R R Sbjct: 181 HGLPRQAAAEPGLVNWAYDHDVPLVATNDVYFAKPGFYDAHDALLCISDGAFVGQDERRR 240 Query: 233 NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTE-DY 291 +P+ + + EEM +LFAD+PEA NT++IA+RC V + LP FPTGD E + Sbjct: 241 -VTPEHWFKPAEEMRKLFADLPEACDNTLDIARRCAFMVHKRDPILPSFPTGDGRNEAEE 299 Query: 292 LVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWS 351 L +A+EGL+ RL L E EY +RL+ EL +I +MGFPGYFLIV +FI+W Sbjct: 300 LEHQAREGLKMRLEGLTLSAPEE-----EYWKRLDFELGIIKKMGFPGYFLIVSDFIKWG 354 Query: 352 KDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKR 411 K +G+PVGPGRGSGAGSLVA+ L ITDLDPL F LLFERFLNPERVSMPDFDVDFC E+R Sbjct: 355 KAHGIPVGPGRGSGAGSLVAWVLTITDLDPLRFGLLFERFLNPERVSMPDFDVDFCQERR 414 Query: 412 DQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--M 469 ++VI +V + YGRD V+QIITFG++ A+AV+RDVGRV+ P G VDR+ K++P +P + Sbjct: 415 EEVISYVQEKYGRDRVAQIITFGSLQARAVLRDVGRVMQLPLGLVDRLCKMVPNNPAAPV 474 Query: 470 TLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLY 529 TLA+A + EP+L + + D V A +D+A +LEG+ RNA HA G+VI +T PLY Sbjct: 475 TLAQAIDLEPRLKQAKKEDANVSACLDVALQLEGLFRNASTHAAGLVIGDRPLTQLTPLY 534 Query: 530 CDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAI 589 D P TQF+ VE AGLVKFDFLGL+TLT+++ A++ + KR +D+ + Sbjct: 535 KDPRSDLPATQFNMKWVESAGLVKFDFLGLKTLTVLDRAVKHLKKRG-----FEIDLGKL 589 Query: 590 PLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVD 649 P DD K++++L +T VFQLES+GM+D +++++ E++ AL++L+RPGP+ + +D Sbjct: 590 PFDDAKTYELLASGQTVGVFQLESQGMRDTLRKMRCGSIEEITALISLYRPGPMDN--ID 647 Query: 650 NFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLR 709 F+D K GR+ + H SL+ VL+ TYG+I+YQEQVMQIAQ+L+GY+LG AD+LR Sbjct: 648 TFVDCKFGRKPVD-----TLHPSLEAVLKETYGVIVYQEQVMQIAQILAGYSLGEADLLR 702 Query: 710 RAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSY 769 RAMGKKK EEM Q+ F GA++ + E + IF+LV KFAGYGFNKSH+AAYA +SY Sbjct: 703 RAMGKKKKEEMDLQKIRFVSGAKEKNVPEEQSGSIFELVAKFAGYGFNKSHAAAYAFISY 762 Query: 770 QTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDG 829 QT WLKA+ P EF AA M+ D+ NT+K+ + R G+ + PD+N F V ++G Sbjct: 763 QTAWLKANTPVEFFAASMSLDLSNTDKLAVFHQDARRFGITVRAPDVNRSGADFEV-ENG 821 Query: 830 EIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFD 889 E++Y +GAI+ VG ++ ++ R +GG FR++FD R D +++N+R +E L +GAFD Sbjct: 822 EVLYALGAIRNVGLEAMKHLVAVRAEGGPFRDVFDFVERIDPRQVNKRAIENLARAGAFD 881 Query: 890 RLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVV 949 + +RA ++ S + A GQ +FG +P + + W + + Sbjct: 882 SIHKNRAQIVASADVLIAHAQSCHADRQGGQGGLFG---SDPGAGRPRLSKTENWNQVDL 938 Query: 950 LDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVI-TAAGLVVAARVMVT 1008 LD E +G YLTGHP+ + + R + + M E G G+V + + Sbjct: 939 LDEELSAVGFYLTGHPLEDMVGMLRRRRTVMLAEAMAQAEAGAEAFRMCGVVRRRQERAS 998 Query: 1009 KRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAR 1068 + G + +L D +G EV+ ++L K + +LE + + + + D G ++ Sbjct: 999 QSGEKFAFVSLSDPTGEYEVLYPPESLRKCRDVLEPGKAVAIKVRAKARD--GEVRFFGD 1056 Query: 1069 EVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARL 1128 + I++A E GL + L+ + L R + + + G + L Sbjct: 1057 DAEPIEKAVENVVAGLRVHLSPSAAEIDALKRRLEPAQAQKGGEVTFVAAI-GGGREIEL 1115 Query: 1129 RFGATWRVSPSDRLLNDLRG 1148 R + + L L+ Sbjct: 1116 RLPGRY--TLDAALRGALKT 1133 >UniRef50_O34623 DNA polymerase III subunit alpha n=111 Tax=Bacteria RepID=DPO3A_BACSU Length = 1115 Score = 1202 bits (3110), Expect = 0.0, Method: Composition-based stats. Identities = 425/1155 (36%), Positives = 648/1155 (56%), Gaps = 46/1155 (3%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL+VHS YS+++ A LV +A LG +LA+TD + G ++FY A GI PI Sbjct: 3 FVHLQVHSGYSLLNSAAAVEELVSEADRLGYASLALTDDHVMYGAIQFYKACKARGINPI 62 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 +G +V D E L +LA +NTGYQNL + S + G P WL Sbjct: 63 IGLTASVFTDDSELEAYPLVLLAKSNTGYQNLLKISSVLQSKSKGGLKP----KWLHSYR 118 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRTGRPDEESYLHA 184 EG+I ++ G G + L G + ++ F ++ + Sbjct: 119 EGIIAITPGEKGYIETLLEGGLFEQAAQASLEFQSIFGKGAFYFSYQPF--KGNQVLSEQ 176 Query: 185 AVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEE 244 ++L+E G+PV AT DV +I D A+ AI G L D P P ++ E Sbjct: 177 ILKLSEETGIPVTATGDVHYIRKEDKAAYRCLKAIKAGEKLTDA--PAEDLPDLDLKPLE 234 Query: 245 EMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMS-TEDYLVKRAKEGLEER 303 EM ++ + PEAL +VEIA++C V V LG+ LP FPT D + +DYL EGL R Sbjct: 235 EMQNIYREHPEALQASVEIAEQCRVDVSLGQTRLPSFPTPDGTSADDYLTDICMEGLRSR 294 Query: 304 LAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRG 363 K Y RL+ EL VI +M F YFLIV +F++ + + G+ GPGRG Sbjct: 295 FG----------KPDERYLRRLQYELDVIKRMKFSDYFLIVWDFMKHAHEKGIVTGPGRG 344 Query: 364 SGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYG 423 S AGSLVAY L ITD+DP++ LLFERFLNPERVSMPD D+DF +RD+VI++V YG Sbjct: 345 SAAGSLVAYVLYITDVDPIKHHLLFERFLNPERVSMPDIDIDFPDTRRDEVIQYVQQKYG 404 Query: 424 RDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPE 483 V+QIITFGT+AAKA +RDVGRV G D+++KLIP PGMTL +A + PQL + Sbjct: 405 AMHVAQIITFGTLAAKAALRDVGRVFGVSPKEADQLAKLIPSRPGMTLDEARQQSPQLDK 464 Query: 484 IYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDK 543 ++ + +ARK+EG+ R+A HA GVV++ +TD PL EG + TQ+ Sbjct: 465 RLRESSLLQQVYSIARKIEGLPRHASTHAAGVVLSEEPLTDVVPLQEGHEGIYL-TQYAM 523 Query: 544 SDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRS 603 +E GL+K DFLGLR LT+I MI K +D+++I D K+F +L + Sbjct: 524 DHLEDLGLLKMDFLGLRNLTLIESITSMIEK----EENIKIDLSSISYSDDKTFSLLSKG 579 Query: 604 ETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISY 663 +TT +FQLES GM+ ++KRL+P ED++A+ AL+RPGP+++ + FIDRKHGR + Y Sbjct: 580 DTTGIFQLESAGMRSVLKRLKPSGLEDIVAVNALYRPGPMEN--IPLFIDRKHGRAPVHY 637 Query: 664 PDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQ 723 P HE L+ +LE TYG+I+YQEQ+M IA ++G++LG AD+LRRA+ KKK E + ++ Sbjct: 638 P-----HEDLRSILEDTYGVIVYQEQIMMIASRMAGFSLGEADLLRRAVSKKKKEILDRE 692 Query: 724 RSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFM 783 RS F EG K + + A +++DL+ KFA YGFN+SH+ AY+++ Q +LKAHYP FM Sbjct: 693 RSHFVEGCLKKEYSVDTANEVYDLIVKFANYGFNRSHAVAYSMIGCQLAYLKAHYPLYFM 752 Query: 784 AAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGE 843 ++T+ + N +K+ + E G++ILPP +N + F V ++G + Y + AIK VG Sbjct: 753 CGLLTSVIGNEDKISQYLYEAKGSGIRILPPSVNKSSFPFTV-ENGSVRYSLRAIKSVGV 811 Query: 844 GPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLG 903 ++ I +AR + F +LFD C R +K +NR++LE LI SGA D G +RA L+ S+ Sbjct: 812 SAVKDIYKARKE-KPFEDLFDFCFRVPSKSVNRKMLEALIFSGAMDEFGQNRATLLASID 870 Query: 904 DALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTG 963 AL+ A+ A + D G+ +E I+ Y + P +L E+ETLG+Y + Sbjct: 871 VALEHAELFAADD-----DQMGLFLDESFSIKPKYVETEELPLVDLLAFEKETLGIYFSN 925 Query: 964 HPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRS 1023 HP++ + K++ L+ + ++ L+ + + TK G + TL D + Sbjct: 926 HPLSAFRKQLTAQGAVSILQ--AQRAVKRQLSLGVLLSKIKTIRTKTGQNMAFLTLSDET 983 Query: 1024 GRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARG 1083 G +E ++F + + +L + +L +G+ ++ +++ + A Sbjct: 984 GEMEAVVFPEQFRQLSPVLREGALLFTAGKCEV--RQDKIQFIMSRAELLEDMDAEKAPS 1041 Query: 1084 LAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLL 1143 + I + Q ++L ++++ L H+ G V+LYY+R + ++ ++ ++ ++L Sbjct: 1042 VYIKIESSQHSQEILAKIKRILLEHK-GETGVYLYYER--QKQTIKLPESFHINADHQVL 1098 Query: 1144 NDLRGLIGSEQVELE 1158 L+ L+G + V L+ Sbjct: 1099 YRLKELLGQKNVVLK 1113 >UniRef50_O67125 DNA polymerase III subunit alpha n=4 Tax=Aquificaceae RepID=DPO3A_AQUAE Length = 1161 Score = 1201 bits (3108), Expect = 0.0, Method: Composition-based stats. Identities = 432/1196 (36%), Positives = 670/1196 (56%), Gaps = 88/1196 (7%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS+ FVHL +H+ +S++DG K LVKKA G A+ ++D NL G KFY A Sbjct: 1 MSK-DFVHLHLHTQFSLLDGAIKIDELVKKAKEYGYKAVGMSDHGNLFGSYKFYKALKAE 59 Query: 61 GIKPIVGADFNVQCDLLGDELT-------------HLTVLAANNTGYQNLTLLISKAYQR 107 GIKPI+G + D T HL ++A ++ G +NL L + AY+ Sbjct: 60 GIKPIIGMEAYFTTGSRFDRKTKTSEDNITDKYNHHLILIAKDDKGLKNLMKLSTLAYKE 119 Query: 108 GYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYF 167 G+ P ID + L + EGLI L+ G +E V +++ F D + Sbjct: 120 GF-YYKPRIDYELLEKYGEGLIALTACLKGVPTYYASINEVKKAEEWVKKFKDIFGDDLY 178 Query: 168 LELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDD 227 LEL P++E +E+A+ + ++AT D +++ D AH + +A+ T+ + Sbjct: 179 LELQANNIPEQEVANRNLIEIAKKYDVKLIATQDAHYLNPEDRYAHTVLMALQMKKTIHE 238 Query: 228 P--KRPRNYSPQQYMRSEEEMCELFAD----IPEALANTVEIAKRCNVTVRLGE---YFL 278 + + + E M + F +AL NT+E+ ++ + + E Y L Sbjct: 239 LSSGNFKCSNEDLHFAPPEYMWKKFEGKFEGWEKALLNTLEVMEKTADSFEIFENSTYLL 298 Query: 279 PQFPTG-DMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGF 337 P++ D + E+YL + A +GL +R+ + K EY ERLE EL+VIN+MGF Sbjct: 299 PKYDVPPDKTLEEYLRELAYKGLRQRIERG------QAKDTKEYWERLEYELEVINKMGF 352 Query: 338 PGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERV 397 GYFLIV +FI W+K N +PVGPGRGS GSLVAYA+ ITD+DP++ LFERFLNPERV Sbjct: 353 AGYFLIVQDFINWAKKNDIPVGPGRGSAGGSLVAYAIGITDVDPIKHGFLFERFLNPERV 412 Query: 398 SMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVD 457 SMPD DVDFC + R++VIE+V + YG D V+QIIT+ M AK +RDV R +G PY D Sbjct: 413 SMPDIDVDFCQDNREKVIEYVRNKYGHDNVAQIITYNVMKAKQTLRDVARAMGLPYSTAD 472 Query: 458 RISKLIPPDP----GMTLAKAFEA-------------------EPQLPEIYEADEEVKAL 494 +++KLIP ++L + ++ + +I E E+K L Sbjct: 473 KLAKLIPQGDVQGTWLSLEEMYKTPVEELLQKYGEHRTDIEDNVKKFRQICEESPEIKQL 532 Query: 495 IDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKF 554 ++ A KLEG+TR+ HA GVVIAP +++ PLY D+EG+ TQ+D +E GL+K Sbjct: 533 VETALKLEGLTRHTSLHAAGVVIAPKPLSELVPLYYDKEGE-VATQYDMVQLEELGLLKM 591 Query: 555 DFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESR 614 DFLGL+TLT + E+I +R + ++ +PLDD K + +LQ +TT VFQLESR Sbjct: 592 DFLGLKTLTELKLMKELIKERHGVD----INFLELPLDDPKVYKLLQEGKTTGVFQLESR 647 Query: 615 GMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLK 674 GMK+L+K+L+PD F+D++A++AL+RPGPL+SG+VD +I RKHG+E + YP L+ Sbjct: 648 GMKELLKKLKPDSFDDIVAVLALYRPGPLKSGLVDTYIKRKHGKEPVEYP-----FPELE 702 Query: 675 PVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKN 734 PVL+ TYG+I+YQEQVM+++Q+LSG+T G AD LR+A+GKKK + MA+ + F +GA + Sbjct: 703 PVLKETYGVIVYQEQVMKMSQILSGFTPGEADTLRKAIGKKKADLMAQMKDKFIQGAVER 762 Query: 735 GINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNT 794 G E K+++ +EKFA Y FNKSHS AY +SY T ++KAHYPAEF A +T + ++ Sbjct: 763 GYPEEKIRKLWEDIEKFASYSFNKSHSVAYGYISYWTAYVKAHYPAEFFAVKLTTEKND- 821 Query: 795 EKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARN 854 K + L+ + G +ILPPDIN F + + I +G+ IKGVGE + I+EAR Sbjct: 822 NKFLNLIKDAKLFGFEILPPDINKSDVGFTIEGENRIRFGLARIKGVGEETAKIIVEARK 881 Query: 855 KGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAK 914 K F+ L D +T +K+N++V+E L+ +GAFD R L+ + ++ KA Sbjct: 882 KYKQFKGLADFINKTKNRKINKKVVEALVKAGAFDFTKKKRKELLAKVANSEKAL----- 936 Query: 915 AEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIE 974 Q +FG EE E+++ L E+E LG Y++GHP++ Y K ++ Sbjct: 937 --MATQNSLFGAPKEEVEELDP-------------LKLEKEVLGFYISGHPLDNYEKLLK 981 Query: 975 RYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDA 1034 ++D+ ++ G++ +V TK G+ + + L D++G +E ++F Sbjct: 982 N--RYTPIEDLEEWDKESEAVLTGVITELKVKKTKNGDYMAVFNLVDKTGLIECVVFPGV 1039 Query: 1035 LDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQID 1094 ++ ++L+E+DR+++V G + D + +K +EV +E ++ L I L Q Sbjct: 1040 YEEAKELIEEDRVVVVKGFLDEDLETENVKFVVKEVFSPEEFAKEMRNTLYIFLKREQAL 1099 Query: 1095 DQLLNRLRQSLEPHRSGT-IPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGL 1149 + + +L+ +E +R+ + L D L ++ +++ ++ L Sbjct: 1100 NGVAEKLKGIIENNRTEDGYNLVLTVDLGDYFVDLALPQDMKLKADRKVVEEIEKL 1155 >UniRef50_A0YQD0 DNA polymerase III subunit alpha n=1 Tax=Lyngbya sp. PCC 8106 RepID=A0YQD0_9CYAN Length = 1206 Score = 1198 bits (3101), Expect = 0.0, Method: Composition-based stats. Identities = 435/1206 (36%), Positives = 679/1206 (56%), Gaps = 76/1206 (6%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FV L +HSDYS++DG ++ L+++A L MPA+A+TD + G ++ GIKPI Sbjct: 3 FVGLHIHSDYSLLDGASQLPQLIERAVELKMPAIAVTDHGVMYGAIELIKQCRSKGIKPI 62 Query: 66 VGADFNV-----QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG----PII 116 +G + V + H VLA N GY+NL L + ++ +G+ G P I Sbjct: 63 IGNEMYVINADVTQQQGRLKKYHQVVLAKNTKGYKNLVKLTTISHLQGFQGKGIFARPCI 122 Query: 117 DRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRP 176 +++ L + +EGLI+ S G++ +++L+G S + + +Y++ F + Y++E+ G P Sbjct: 123 NKELLKQYHEGLIVTSACLGGELPQAILQGRSDVARKVAKWYQDVFGEDYYIEIQDHGSP 182 Query: 177 DEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSP 236 ++ V++A + ++ATND FI D +AH+ + I+ + + KR R YS Sbjct: 183 EDRIVNVELVKIAREFDIKIIATNDSHFISCYDVEAHDALLCINTQKLITEDKRMR-YSG 241 Query: 237 QQYMRSEEEMCELFAD------IPEALANTVEIAKRCN-VTVRLGEYFLPQFPTGDMSTE 289 +Y++S EEM +LF D I EA+ANT+E++++ T LGE +P +P T Sbjct: 242 TEYLKSAEEMAQLFRDHLPDDVIREAIANTIEVSEKIEPYTGILGESRIPDYPIPPNHTS 301 Query: 290 D-YLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFI 348 D YL + +GL ERL + R + P Y ERLE EL+++ +MGF YFL+V ++I Sbjct: 302 DTYLEEVTWKGLIERLQDQI-KIQTRSEIPPVYRERLEYELKMMQKMGFSTYFLVVWDYI 360 Query: 349 QWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCM 408 ++++D+ +PVGPGRGS AGSLVAY+L IT++DP+ LLFERFLNPER SMPD D DFC+ Sbjct: 361 KYARDHQIPVGPGRGSAAGSLVAYSLGITNIDPVHHGLLFERFLNPERKSMPDIDTDFCI 420 Query: 409 EKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG 468 +RD++I +V + YG D V+QIITF M +KAV++DV RVLG PY D+++KLIP G Sbjct: 421 ARRDEMIRYVTNQYGEDKVAQIITFNRMTSKAVLKDVARVLGIPYSKSDQMAKLIPVSRG 480 Query: 469 MTLA-----KAFEAEPQLPEIYEADE--------------EVKALIDMARKLEGVTRNAG 509 P+ YE ++ V+ IDMA ++EG + G Sbjct: 481 KPAKLKVMISDDTPSPEFKSAYETEDVPIKNDLGNEVGTIPVRQWIDMAIRIEGTNKTFG 540 Query: 510 KHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWAL 569 HA GVVI+ + + PL + +G +TQ+ D+E GL+K DFLGL+ LTII + Sbjct: 541 VHAAGVVISKQPLDEIVPLQRNNDGA-VITQYFMEDIEALGLLKMDFLGLKNLTIIQRVV 599 Query: 570 EMINKRRAKNGEP---PLD------------IAAIPLDDKKSFDMLQRSETTAVFQLESR 614 E+I + P P D I +P D +K++ +L+R + VFQLES Sbjct: 600 ELIEENHHFKMIPDQLPFDERKACQILAKGKIKKLPEDIQKTYKLLERGDLEGVFQLESS 659 Query: 615 GMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLK 674 GM+ +++ L+P ED+ +++AL+RPGPL +G++ FIDRKH R I Y +H L+ Sbjct: 660 GMRQIVRDLKPSNIEDISSILALYRPGPLDAGLIPKFIDRKHKRVPIEY-----EHPLLE 714 Query: 675 PVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKN 734 +L+ TYGI++YQEQ+M++AQ L+GY+LG AD+LRRAMGKKK EM KQR F +G+ KN Sbjct: 715 SILQETYGILVYQEQIMKMAQDLAGYSLGQADLLRRAMGKKKLSEMQKQREAFIDGSTKN 774 Query: 735 GINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNT 794 G++ ++A +FD + FA Y FNKSHS AY V+YQT +LKA+YP E+MAA++T + DNT Sbjct: 775 GVSKQIAEHLFDQMLAFAEYCFNKSHSMAYGFVTYQTAYLKANYPVEYMAALLTENSDNT 834 Query: 795 EKVVGLVDECWR-MGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEAR 853 +KV +D C R + +K++ PD+N F + DGEI++G+ AIK VGE IE I+ AR Sbjct: 835 DKVQKYIDSCQRSLKIKVVSPDVNHSNVDFTPS-DGEIIFGLSAIKNVGETAIENILAAR 893 Query: 854 NKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHA 913 +GG F +L D C+R +N R LE LI GA D L +R + L + A A Sbjct: 894 KEGGKFSDLPDFCSRVSLHIVNSRALESLIKCGALDSLHQNRKQAIEYLNFLIPWAQGKA 953 Query: 914 KAEAIGQADMFGVLAE----EPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQY 969 K IGQ+ +F +L + + + L E+E LG Y++ HP+ Sbjct: 954 KDREIGQSSIFDLLGDTTTKSTNEGAPKPPKTDDFSTPEKLQFEKELLGFYVSEHPLQSV 1013 Query: 970 LKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVM 1029 +K + L+D+ +GK + ++V + VTK+G + ++D SG+ E + Sbjct: 1014 IKAY-PVEDAITLQDLAE-HKGKKVKVFLVIVEVKRHVTKKGETMAFLKVEDMSGQAEAI 1071 Query: 1030 LFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEARE-----KYARGL 1084 +F + LE+++ +V+G+V D +++ E ++ + + + Sbjct: 1072 VFPRTFQEILTSLEENKSFLVTGKV--DKQEEKIQLIIEEAESVEHLLQSVKPTEKLPSV 1129 Query: 1085 AISLTDRQIDD-QLLNRLRQSLEPHRSGTIPVHLYYQRADARARL-RFGATWRVSPSDRL 1142 + LT +I+ L+ L+ LE + + + L RFG+ + V + + Sbjct: 1130 RLYLTPEEIEQTSKLDNLKTILEDYNGNPDQKKYPVEAVVSNQYLVRFGSRFWVEDREGI 1189 Query: 1143 LNDLRG 1148 ++ L+ Sbjct: 1190 VDRLKS 1195 >UniRef50_B1GZ26 DNA polymerase III subunit alpha n=2 Tax=cellular organisms RepID=B1GZ26_UNCTG Length = 1174 Score = 1198 bits (3099), Expect = 0.0, Method: Composition-based stats. Identities = 432/1199 (36%), Positives = 683/1199 (56%), Gaps = 74/1199 (6%) Query: 5 RFVHLRVHSDYSMIDGLAK-------TAPLVKK-AAALGMPALAITDFTNLCGLVKFYGA 56 FVHL H++YS++DG + L A MPALAITD N+ G ++FY A Sbjct: 4 EFVHLHNHTEYSLLDGACRLIDDKGKPGELFNLIAKEYKMPALAITDHGNMYGAMEFYLA 63 Query: 57 GHGAGIKPIVGADFNVQCDLLGDE------------LTHLTVLAANNTGYQNLTLLISKA 104 +GIKPI+G + V D+ HLT+LA + GYQNL ++S Sbjct: 64 AKQSGIKPIIGCEIYVAPKSRFDKKNINRITEDNVNYHHLTLLAKDFEGYQNLMRIVSAG 123 Query: 105 YQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-P 163 + G+ P +D++ L + GLI LSG G+V +L++GN Y + F Sbjct: 124 FTEGF-YYKPRVDKEVLKKYRCGLIALSGCLAGEVASALVKGNKKKAQNAAIEYRDIFDK 182 Query: 164 DRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGF 223 D +++E++ G ++ + + +EL+++ +P+VATND F+ D + H+I + I G Sbjct: 183 DNFYIEIMDNGLETQKKIIPSLIELSKSAAIPLVATNDCHFLKKEDAEVHDILLCIGTGK 242 Query: 224 TLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT 283 L++ KR S Y RS E+M + F+ +PEA+ NT+EIA++ N+ + + LPQFP Sbjct: 243 MLNETKRLHFDSDLFYYRSAEDMIKTFSSVPEAIKNTLEIAEKTNLEINTDKLLLPQFPI 302 Query: 284 GDM--STEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYF 341 S +YL + GL R + +PE++ERL+ EL VIN+MGF YF Sbjct: 303 PKEYKSDSEYLETLCRRGLAARYDTI----------KPEHEERLKHELSVINKMGFASYF 352 Query: 342 LIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPD 401 LIV +FI+++KD+ +PVGPGRGSG+G++VAY L ITD+ PL++ LLFERFLNP+R SMPD Sbjct: 353 LIVSDFIKYAKDHRIPVGPGRGSGSGAMVAYTLGITDICPLKYGLLFERFLNPDRRSMPD 412 Query: 402 FDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISK 461 D+DF RD+VI++V YG + +QIITFG+M ++ VI+DV RV+G + I+K Sbjct: 413 LDIDFADYGRDEVIQYVRRKYGEEKCAQIITFGSMQSRLVIKDVARVMGFTPAESNNIAK 472 Query: 462 LIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTK 521 LIP + ++A+A +A L ++ +ADE++ LI ++KLEG+ R+ G HA G+VIA + Sbjct: 473 LIPQNA--SIAEALQASTDLSKLVKADEKIAKLIAASQKLEGLKRHTGVHAAGMVIANKE 530 Query: 522 ITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGE 581 IT ++PL + TQ+D + GL+K DFLGL+TLTII+ ++ I ++ Sbjct: 531 ITSYSPLAKGSK-DIVTTQYDGGVLPQLGLLKIDFLGLKTLTIIDDCVKFIREK-----N 584 Query: 582 PPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPG 641 P ++ IPLDDKK++++L ++T +FQLES GM+DLIK+L+P +D+IAL+AL+RPG Sbjct: 585 PSFNLDNIPLDDKKTYELLGEAKTMGIFQLESIGMRDLIKKLKPSNIDDIIALIALYRPG 644 Query: 642 PLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYT 701 P+ SGM+DNF++RKHGR +I Y H + +L+ TYG+ILYQEQVM+++ L+G+T Sbjct: 645 PMGSGMLDNFVNRKHGRTKIVY-----DHPLQESILKDTYGVILYQEQVMKMSVALAGFT 699 Query: 702 LGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHS 761 G AD LR+AM KK PE + KQR F G ++ G+N +++ KIF+ + F GYGFNKSHS Sbjct: 700 PGEADSLRKAMSKKIPEVIEKQREKFVRGTKEKGVNKKISEKIFNNIVAFGGYGFNKSHS 759 Query: 762 AAYALVSYQTLWLKAHYPAEFMAAVMTADM-------DNTEKVVGLVDECWRMGLKILPP 814 AAY ++SY+T +LKA+YP E++ A+ ++ + K+V + + +K+LPP Sbjct: 760 AAYGIISYKTAYLKANYPLEYITALCNNEIGRPATKNNEESKLVAYLGDALAFDIKVLPP 819 Query: 815 DINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGG---YFRELFDLCARTDT 871 D+ F +D I +G+ A+K VG+G ++I ++R + G F++ D R D Sbjct: 820 DVQYSDGKFK-TEDKNIRFGMLAVKNVGKGVTDSIEQSRIENGQLKSFKDWVDFLQRIDL 878 Query: 872 KKLNRRVLEKLIMSGAFDRLGPH----RAALMNSLGDALKAADQHAKAEAIGQADMFGVL 927 K +N++ LE LI +G FD G R L+ ++ A + + Q +F + Sbjct: 879 KSINKKALESLIKAGVFDSFGKDKFTIRGRLIQNIDSYADKAAKVKQYRESLQGFLFDNV 938 Query: 928 AEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGG--VRLKDM 985 + I S +P L+ E+E LG Y++GHP+ K+I Y +L + Sbjct: 939 KTITDDI-LSLQEVKPLEPLEALNFEKEVLGFYISGHPLTHRKKDIIAYSNYRLDKLPQL 997 Query: 986 HPTERGKVITAAGLVVAARVMV-TKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEK 1044 K + AG++V+ + + T R ++D G + +LF +K+ L Sbjct: 998 KENADRKTVRIAGMIVSVKKLTSTTRKEPYARFKIEDLHGNVNALLFPKNFEKFGGYLTL 1057 Query: 1045 DRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARG---LAISLTDRQIDDQLLNRL 1101 + I+++ G ++ + G L+M ++M IDEA++K + I + + L L Sbjct: 1058 NNIVVIKGWLT--NMQGQLEMITEDIMTIDEAKKKSPSKCDEIRIKFSAASFNVALEEEL 1115 Query: 1102 RQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIG-SEQVELEF 1159 ++ + H +G V+L + + + SD +ND+ +IG + VEL + Sbjct: 1116 KKIFKIH-TGKTKVYLILEDS-LHGNFSIETEYLSDCSDNFINDVETIIGVKDSVELHY 1172 >UniRef50_B2UNA1 DNA polymerase III, alpha subunit n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UNA1_AKKM8 Length = 1174 Score = 1193 bits (3088), Expect = 0.0, Method: Composition-based stats. Identities = 451/1190 (37%), Positives = 672/1190 (56%), Gaps = 73/1190 (6%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYG---------A 56 FVHL H++YS++DG L+ + + +GMPA+A+TD NL G ++ A Sbjct: 5 FVHLHNHTEYSLLDGAVHIKDLIAECSRMGMPAVAVTDHGNLFGAIELVMETNSLNKSVA 64 Query: 57 G---------HGAGIKPIVGADFNVQCDLL--------GDELTHLTVLAANNTGYQNLTL 99 +KPI G + + + + THL +LA N TG+QNL Sbjct: 65 AWNKEHPEGPQKQEVKPIFGCEVYLSPTPISVKKQLPGRRKYTHLLLLAENETGWQNLVK 124 Query: 100 LISKAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYE 159 L+S+++ G+ P +D + L E +EGLI + G + LL +E + + Sbjct: 125 LVSRSHLEGF-YYKPRVDMETLREFHEGLICCTACIAGPLNEWLLNDQPEKAEEALLALK 183 Query: 160 EHFPD-RYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVA 218 + F D F+EL G +++ L V +A P+VATNDV F+ D D H++ + Sbjct: 184 DIFGDDNIFVELQDHGMEEQKKCLPELVRIARKTNTPIVATNDVHFLRKEDHDMHDVLIC 243 Query: 219 IHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE--- 275 I L PKR R YS + Y++S EEM E+F D PEA+ NT++IA+RCNV ++L Sbjct: 244 IGTNEKLASPKRMR-YSTEVYLKSPEEMREVFKDYPEAVENTLKIAERCNVAIKLDSTST 302 Query: 276 YFLPQFPTGDMST-EDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQ 334 P+F T D S+ E+YL K +GLEER +ER+ E +RL+ EL +INQ Sbjct: 303 EKYPEFGTPDGSSREEYLRKVCYKGLEERYG------KERVAADKELRDRLDYELGIINQ 356 Query: 335 MGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNP 394 + FP YFLI +FI W+KD+ +PVGPGRGS AGSLVAYA+KIT++DPL F L+FERFLNP Sbjct: 357 LKFPSYFLITADFINWAKDHDIPVGPGRGSAAGSLVAYAMKITNIDPLRFGLIFERFLNP 416 Query: 395 ERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYG 454 ERVS PD D+DFC +R +VI++V YG AVS IIT+GTM AK+V+RDV RV+ Y Sbjct: 417 ERVSPPDIDIDFCQTRRPEVIDYVRQKYGERAVSHIITYGTMGAKSVLRDVARVMDMSYA 476 Query: 455 FVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGG 514 DRISKLI P +TL ++++ +L E+ +DE L A +LEG+ RN G HA G Sbjct: 477 DGDRISKLIETGPKVTLQSSYKSNEELRELIASDEGYAELWGYATRLEGLIRNVGVHAAG 536 Query: 515 VVIAPTKITDFAPLYCDEEGK---HPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEM 571 VVI + + L D+ V Q D S + GL+K DFLGL+TLT+++ A Sbjct: 537 VVIGDRPLDEHVALTRDDLSDPHAAVVAQCDMSAIYEVGLLKMDFLGLKTLTVMHDA--- 593 Query: 572 INKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDM 631 ++ A+ P + ++PLDD+++ D+L R +T VFQLES GM D +R ED+ Sbjct: 594 --EQYARWRVPEFKLDSVPLDDRETLDLLNRGDTMGVFQLESGGMVDTCRRYGIQKIEDI 651 Query: 632 IALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVM 691 I L+AL+RPG +Q +D I+ K G ++ Y +H L+ V TYG+++YQEQV Sbjct: 652 IDLLALYRPGAMQ--FMDEMIEVKKGLRQVEY-----EHPLLEQVSGETYGVMIYQEQVQ 704 Query: 692 QIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEK-NGINAELAMKIFDLVEK 750 A++L+GYTLGGAD+LRRAMGKK P +MAK+++ F EG K N I+ + A IFD +EK Sbjct: 705 AAAKLLAGYTLGGADLLRRAMGKKDPAKMAKEKAHFVEGCWKTNQIDEKTATAIFDKIEK 764 Query: 751 FAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLK 810 FAGYGFNKSHSA Y +SY T +LKAH+P EF+ +M+ + +N +K+ + E RMG++ Sbjct: 765 FAGYGFNKSHSACYGHISYWTAYLKAHFPVEFLCGLMSNEANN-DKIGVFIQEANRMGIE 823 Query: 811 ILPPDINSGLYHFHVND----DGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLC 866 ILPPD+N + F + YG+ AIK VGEG ++ ++E R K G F + D+C Sbjct: 824 ILPPDVNKSMLKFTPEKMPSGKLAVRYGLAAIKNVGEGAMQILLEEREKNGEFSSMEDIC 883 Query: 867 ARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGV 926 R D+K +N+++LE LI +GA D R L + AL A Q K +A+GQ +F + Sbjct: 884 NRLDSKSVNKKILESLIRAGALDWTLEPRCVLFERVDLALSGASQVHKDKALGQGSLFDM 943 Query: 927 LAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEI--ERYVGGVRLKD 984 E P + + W ++ + E++ LG Y GHP++ I E+Y + Sbjct: 944 TFEAPRV--KDEPAVPEWSKEQRMGDEKDLLGAYFCGHPLDSMRGVIDAEKYTRIGLIDT 1001 Query: 985 MHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQL--- 1041 + P E + AG+V + ++K G + I TL+D +G +EV+L++D +K Q++ Sbjct: 1002 LEPHELKQKHQIAGMVRSVTPKISKAGRKFAILTLEDFTGSIEVLLWSDVYEKAQEMEGG 1061 Query: 1042 LEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARG----LAISLTDRQIDDQL 1097 LE + V + DD + + A+ + + + K G L I ++ + + Sbjct: 1062 LEPGVFVSVRANIREDDRTSSKSVAAQSIDPLGGKKRKSKSGDQGPLNIIVSPLRHTRKN 1121 Query: 1098 LNRLRQSLEPHRSGTIPVHLYYQRADARARL-RFGATWRVSPSDRLLNDL 1146 L ++R L+ + G V+L + + +++ +RV+ L +L Sbjct: 1122 LEQIRDILKRY-PGRSKVNLTIKDSLGHSQILELDERFRVNRCPELETEL 1170 >UniRef50_B0VJC8 DNA polymerase III, alpha subunit n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VJC8_9BACT Length = 1146 Score = 1193 bits (3087), Expect = 0.0, Method: Composition-based stats. Identities = 409/1158 (35%), Positives = 637/1158 (55%), Gaps = 45/1158 (3%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL H+ YSM+DG + ++K A MPA+AITD NL G + FY AGIKPI Sbjct: 3 FVHLHNHTQYSMLDGACRVDRMIKLAKEYAMPAVAITDHGNLFGAIDFYKTAKNAGIKPI 62 Query: 66 VGADFNVQCDLLGDE------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRD 119 +G + + L E HL +LA N GY+NL L S +Y +G+ P I + Sbjct: 63 LGIEAYIINGDLESETGKNEIRYHLILLAQNEQGYKNLMKLSSYSYIKGF-YYKPRISKT 121 Query: 120 WLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEE 179 L + +EGLI LS G++ + +E +Y++ F + +++E+ E+ Sbjct: 122 LLKQYSEGLICLSACVKGEIPALIYNDRMQQAEEVALWYKDLFQEHFYIEIQDHNLEPEK 181 Query: 180 SYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQY 239 + ++LA+ +P+V TND +++ +D++AH+I + I G L DP R + Q Y Sbjct: 182 KIMPRLIDLAKKLEIPMVLTNDCHYLNKNDYEAHDILLCIQTGKLLHDPDRLHYGTNQLY 241 Query: 240 MRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF--PTGDMSTEDYLVKRAK 297 +S EEM ELF D+PEA NT++IA ++ + ++ LP P + +YL Sbjct: 242 FKSPEEMKELFPDVPEAYNNTLKIADMVDLELHYDKFLLPNIETPPEFKTMGEYLRFLCY 301 Query: 298 EGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVP 357 E + + L +R+E EL+VI++MGF GYFLIV + I ++ VP Sbjct: 302 ENAKIKYPDL----------NETIKQRIEYELEVIDRMGFNGYFLIVKDIIDNARKQSVP 351 Query: 358 VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEH 417 VGPGRGSGAGS+VAY L IT +DPL++ L+FERFLNP+R+SMPD D+DFC + R +VI++ Sbjct: 352 VGPGRGSGAGSIVAYLLDITQIDPLQYGLVFERFLNPDRISMPDIDIDFCAQNRSKVIDY 411 Query: 418 VADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEA 477 + YGR++V+QIITF T+ AK+VI+DV RVL P + I+K I TL +A+ Sbjct: 412 IIQRYGRESVTQIITFSTLGAKSVIKDVARVLSVPASEANAITKTIQG--NKTLDEAYNQ 469 Query: 478 EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDE---EG 534 P+ + +++ + + ++ LEG+ R H GVVIAP +TD+ PL C E Sbjct: 470 YPEFSSLINSNDLYRTIFKHSKVLEGLVRQTSVHPAGVVIAPGDLTDYVPLACSTQKGEE 529 Query: 535 KHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDK 594 K + QF+ + L+K D LGL+ LT+I ++++ + + +DI I L+DK Sbjct: 530 KVILVQFEGKWLNDLKLLKMDILGLKNLTLIQKTIDLVKQ----AQDIDIDINHISLEDK 585 Query: 595 KSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDR 654 K +++L + ET VFQ ES GM+ + L+P+ ED+IA+VAL+RPGP+Q +D++I R Sbjct: 586 KVYNILGKGETDGVFQFESDGMRKYLIELKPNKIEDLIAMVALYRPGPMQ--FIDSYIAR 643 Query: 655 KHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK 714 KHGRE++ Y H ++ L+ TYG+ +YQEQVMQIA+ + G+T G AD LR+AMGK Sbjct: 644 KHGREKVVY-----DHPLMENALKETYGVTIYQEQVMQIAREMGGFTGGEADSLRKAMGK 698 Query: 715 KKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWL 774 K + M + + F +GA+ + + KI+ +FA Y FNKSH+ YALV+YQT +L Sbjct: 699 KNSDLMQQYQEKFRQGAKAQNVPDAVIEKIWQDWLRFAEYAFNKSHATCYALVAYQTAYL 758 Query: 775 KAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYG 834 KA+YP EFMAA+++ + D+ K+ G ++ C +MG+KI+PP+IN F V+ E+++G Sbjct: 759 KAYYPVEFMAALLSLE-DDPTKIPGKIEVCKKMGIKIIPPNINRSDSEFRVHGK-EVLFG 816 Query: 835 IGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPH 894 + AIK +G+ + IIE RN+ G + +F+ C R D+ +N+ +LE LI SGA D L Sbjct: 817 LRAIKNLGDAAMRDIIEDRNQNGPYTSIFEFCNRLDSTSVNKTILESLIASGAMDELEGT 876 Query: 895 RAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIE--QSYASCQPWPEQVVLDG 952 RA N + AL+ + K GQ+ +F + E E S +PW L+ Sbjct: 877 RAQKWNVIELALQFSSNDQKDRKRGQSTIFDFMDTEDEDNNYYPPLPSVEPWSYIYQLEK 936 Query: 953 ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012 E+E LG YL+GHP+ +Y I+ T+ + AG++ +GN Sbjct: 937 EKEVLGFYLSGHPLFEYRSLIKHLTNAN--SSTGKTKNNGELLIAGIINNISKKKDNKGN 994 Query: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSF--DDFSGGLKMTAREV 1070 I +D G+ EV LF +Y + + ++ + G S + L++ + Sbjct: 995 PIAFVEFEDLCGKFEVPLFNKDFMQYHKKISPGKVFFIIGNKSTFNGNEDSILRILPNAL 1054 Query: 1071 MDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRF 1130 +D E + + + I++ + + + LL L + + +G + +Q D Sbjct: 1055 IDFKELPSELSGEIKINIPNEHLKNGLLTELGNRISRN-TGKFKLITKFQSEDMNDYQLE 1113 Query: 1131 GATWRVSPSDRLLNDLRG 1148 P + LLN L Sbjct: 1114 SRKLFF-PDEALLNWLEK 1130 >UniRef50_B0MN02 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MN02_9FIRM Length = 1109 Score = 1193 bits (3087), Expect = 0.0, Method: Composition-based stats. Identities = 421/1146 (36%), Positives = 628/1146 (54%), Gaps = 58/1146 (5%) Query: 34 LGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVQCDLLGDE-------LTHLTV 86 +G A+A+TD + G + FY GIK I+G + V D+ HL + Sbjct: 1 MGQTAVALTDHGVMYGSIDFYNECVENGIKAIIGCEVYVAPRTRFDKSTKSDMKPHHLVL 60 Query: 87 LAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRG 146 L +N GY+NL+ L++ Y G+ P +DR+ L ++GLI LS G++ R+LL G Sbjct: 61 LCKDNEGYKNLSKLVTLGYTEGF-YNKPRVDRELLRRYSKGLICLSACISGELARTLLDG 119 Query: 147 NSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFID 206 A V Y E F + Y++EL G ++E L + +A+ G +VATND +++ Sbjct: 120 RLADAVTLVKEYREIFGEDYYIELQSHGISEQERILPYLLRVAKDTGTQLVATNDAHYVE 179 Query: 207 SSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPE-ALANTVEIAK 265 D + I TLDD + + + Y++SE+EM L P+ A NTV+IA+ Sbjct: 180 KEDSYVQRVLTCIATNTTLDDKNSMQFATDEFYLKSEDEMKAL--GFPQSAYDNTVKIAE 237 Query: 266 RCNVTVRLGEYFLPQFPTGDMSTED-YLVKRAKEGLEERLAFLFPDEEERLKRRPEYDER 324 +CNV+ G LP F + Y + ++GL +R P E +R Sbjct: 238 KCNVSFTFGHTILPFFKAEGYDNNEIYFNAQVRKGLVKRYGDPVP---------KEVLDR 288 Query: 325 LETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEF 384 E E+ VI +MGF YFLIV +FI ++K NG+ VGPGRGSGAGS+ AY L ITD+DP+ F Sbjct: 289 AEYEMSVIKKMGFIDYFLIVADFIGYAKRNGIAVGPGRGSGAGSVCAYCLGITDIDPIRF 348 Query: 385 DLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRD 444 +LLFERFLNPERV+MPDFDVDFC +R +VI++V YGRD V+QIITFGTMAA+ IRD Sbjct: 349 NLLFERFLNPERVTMPDFDVDFCYIRRQEVIDYVVRKYGRDHVAQIITFGTMAARGAIRD 408 Query: 445 VGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGV 504 GR +G PYG VD ++KLIP T+ A ++E +L ++ +D EV LI+ A+K+EG+ Sbjct: 409 AGRAMGLPYGKVDTVAKLIPMSMHSTIDGALKSEKELVKLASSDSEVSLLIETAKKIEGM 468 Query: 505 TRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTI 564 RN HA G+VI + D+ PLY + EG+ +TQ+ + +E GL+K DFLGLR LT+ Sbjct: 469 ARNTSIHAAGIVITRDPVADYVPLYQNSEGE-VMTQYTMTAIERLGLLKMDFLGLRYLTV 527 Query: 565 INWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQ 624 I +++ K P DI IP +D +++DM+ T VFQ ES GM L+ R++ Sbjct: 528 IQDCCKLVVKSC-----PDFDIEKIPENDAETYDMMSSGGTLGVFQFESAGMTSLLSRMK 582 Query: 625 PDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGII 684 P ED+ A ++L+RPGP+ S + ++ + E+I Y +H LK +L+ TYG I Sbjct: 583 PRSVEDLTAALSLYRPGPMDS--IPTYLANRRNPEKIRY-----KHPLLKGILDVTYGCI 635 Query: 685 LYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKI 744 +YQEQVM I +VL+GY+ G AD++RRAM KKKPE M K+R+ F EGA N ++ ++A +I Sbjct: 636 VYQEQVMMICRVLAGYSYGRADIVRRAMAKKKPEVMVKERATFVEGAVANNVDRQVAEEI 695 Query: 745 FDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDEC 804 FD + FA Y FNKSH+AAY+L++Y+T +L+ HY E+M A++T+ + K + + Sbjct: 696 FDDMMSFASYAFNKSHAAAYSLLAYRTAYLRCHYYKEYMVALLTSVIGWGGKTAEYIGDL 755 Query: 805 WRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFD 864 + GLK+LPP +N F +DG I +G+ AIK VG I IIE R K F+ LFD Sbjct: 756 AQHGLKLLPPHVNYSETGFSCENDG-IRFGLLAIKNVGANMIADIIEERTKH-PFKSLFD 813 Query: 865 LCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF 924 C R K +N+R LE LI GAFD LG +R +M SL L Q E GQ + Sbjct: 814 FCERMSDKNINKRALESLIKCGAFDGLGNNRREMMISLELMLDTLSQRHDLE--GQMSLM 871 Query: 925 GVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKD 984 G E + +L E+E LG+Y++GHP + + + I R G + Sbjct: 872 GEDDAADEG-AFQIKPADEYSHAQLLSYEKEMLGIYISGHPADPFYR-IARESGYENIGS 929 Query: 985 -MHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLE 1043 + + + + L+ + R +TK G +G ++D SG +E ++F ++Y +L Sbjct: 930 ILESNKDKQNVRVTALLTSVRNHITKSGKTMGFIVIEDASGEIECLVFPKLYEQYSSMLR 989 Query: 1044 KDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR-----------EKYARGLAISLTDRQ 1092 + G VS +D G K+ + D A+ + A L I + R Sbjct: 990 TGNVYAFEGTVSAED-EGDPKLLINAITQPDLAKLRKMHESRNTGQNKAAVLYIRFSSR- 1047 Query: 1093 IDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGS 1152 DD + ++ L+ ++ G + ++ D R + V + + L G+ G Sbjct: 1048 -DDADIPAVKALLKVNK-GNTLTKICFE--DTRETITLPPALSVDLNSDFIQKLNGICGK 1103 Query: 1153 EQVELE 1158 + ++ Sbjct: 1104 NNIIIK 1109 >UniRef50_A6CCN9 DNA polymerase III alpha subunit n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CCN9_9PLAN Length = 1154 Score = 1193 bits (3086), Expect = 0.0, Method: Composition-based stats. Identities = 417/1166 (35%), Positives = 658/1166 (56%), Gaps = 50/1166 (4%) Query: 17 MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVQCDL 76 M+DG ++ +V K GM +LAITD NL G + FY + PI+G + + Sbjct: 1 MLDGASRIPEMVSKVKEAGMNSLAITDHGNLYGAMDFYQHCRSQDVNPILGLEAYIAPRS 60 Query: 77 LGDEL--------THLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEGL 128 ++ HLT+LA N G++NL L S +Y G+ P ID++ L +EGL Sbjct: 61 RFEKGASRMKEASFHLTLLAQNRQGFENLIKLSSASYLEGF-YYKPRIDKEILEAHSEGL 119 Query: 129 ILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVEL 188 ILL+G G++ +L + ++ A+YE+ F DR ++E+ G + L V+L Sbjct: 120 ILLTGCAAGELSHHILGEDWEEAEKLCAWYEKVFGDRVYMEIQNAGLEIQRQCLEGTVDL 179 Query: 189 AEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCE 248 A GLP+VATND ++D D +A ++ + + + D KR + Q ++R+++EM Sbjct: 180 ANRMGLPLVATNDAHYVDQKDAEAQDVLLCVSTRAVVSDEKRMKMTGDQFFVRTQDEMYN 239 Query: 249 LFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTE-DYLVKRAKEGLEERLAFL 307 F + +A+A T E+A+R ++ + + F P F D T+ YL K EERL Sbjct: 240 AFPGLEDAVARTQELAERVDIQMS-DKKFYPVFQPPDNLTDTQYLRKLC----EERLPIK 294 Query: 308 FPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAG 367 + DE + + +RL+ EL VI QMG+ YFLIV +F+Q++++ G+P RGS G Sbjct: 295 YGDELTQA-----HWDRLDLELGVIEQMGYSSYFLIVWDFVQFAENEGIPCT-ARGSACG 348 Query: 368 SLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAV 427 ++VA+ L ++ + PL++DLLFERFL+P R PD D+DFC ++R VI++ YG +V Sbjct: 349 AIVAFLLGMSQVCPLKYDLLFERFLDPSRTEPPDIDIDFCRDRRQLVIDYTKQKYGEKSV 408 Query: 428 SQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEA 487 +QI TFGT+ AKA IRDVGR LG P V+ I+K+IP G+ L A + P L Y+ Sbjct: 409 AQIGTFGTLKAKAAIRDVGRALGVPLARVNEIAKMIPESLGIKLKDALKESPDLQSAYDQ 468 Query: 488 DEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVE 547 D E+K L+D+A +LEG+ R+AG HA GVV+A +++ PL +TQ+D VE Sbjct: 469 DSEIKRLLDLAMQLEGLCRSAGTHAAGVVVADLPLSEVVPLQSITGKTDIITQWDGPTVE 528 Query: 548 YAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTA 607 GL+K DFLGLR LTI++ A++ + K R + ++ +PLDD+++F++LQR ET Sbjct: 529 SVGLLKMDFLGLRNLTILDKAVQNVKKHRGID----INPHKLPLDDQETFELLQRGETKG 584 Query: 608 VFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQ 667 +FQLES GM+DL+ +++PD FED+IA AL+RPGPL+ GMV ++D K+ R I Sbjct: 585 IFQLESGGMRDLLTKMKPDKFEDIIATSALYRPGPLEGGMVMQYVDVKNNRIPI-----P 639 Query: 668 WQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVF 727 H + +L+ TYG+++YQEQVM+I + G L A +A+ KKK + +A R + Sbjct: 640 KVHPIVDEILDETYGVMVYQEQVMRILNRVGGIELSAAYRCIKAISKKKLKIIADFRDQY 699 Query: 728 AEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVM 787 EGA+K+G++ +LA +F+++EKFAGYGFNKSHS AY V+Y T +LKAHYP EFMAA++ Sbjct: 700 LEGAKKSGVDVKLATDLFEMIEKFAGYGFNKSHSTAYGGVAYATAYLKAHYPKEFMAALL 759 Query: 788 TADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIE 847 + M++ E++ VD+C RM +++LPPDIN F V+ + +I +G+GAIKGVGE +E Sbjct: 760 SCGMESHERITEHVDDCRRMKIEVLPPDINRSEVEFSVDGE-KIRFGMGAIKGVGEQVLE 818 Query: 848 AIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALK 907 A+++ R + G F L++LC R D K LN+ LE LI +GA + LG ++A LM ++ A++ Sbjct: 819 AVVKEREENGPFTSLYNLCERVDPKTLNKSTLETLIKAGALNSLGGNQAQLMLTVERAVQ 878 Query: 908 AADQHAKAEAIGQADMFG---VLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGH 964 +A + A GQ +FG V E + E S + WP L E+E G YLT H Sbjct: 879 SALNIHRDRARGQKSLFGDETVDEETGAEEEASLPEAEDWPRAQKLGAEKEVFGFYLTSH 938 Query: 965 PINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKR-----GNRIGICTL 1019 P+ + + +Y ++ + + AG+V + ++ TK+ R L Sbjct: 939 PLAEMGTSLTKYAQNQT-NELAEMDDRVEVILAGMVSSIKMAATKKPSKNGNTRYVNFDL 997 Query: 1020 DDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREK 1079 +D G + +++ + + ++ + ++I+ G++ D + +++ +++AR++ Sbjct: 998 EDPHGLVRCIMWPEQFASMGEKVKMEAMVIIKGKI--DKRGREPNVIVDQLLTLNDARKQ 1055 Query: 1080 YARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADA-------RARLRFGA 1132 + LAI+ Q + + L G V L D R L Sbjct: 1056 FTDRLAINFKRGVHTRQDMVNVHDVLTQF-PGQTEVILVVDSVDQEKPGTQLRYVLNPPG 1114 Query: 1133 TWRVSPSDRLLNDLRGLIGSEQVELE 1158 + RVS S+ L +IG + Sbjct: 1115 SLRVSCSNEFETQLTAVIGQSHIHFH 1140 >UniRef50_Q4FSI0 DNA polymerase III, alpha subunit n=6 Tax=Bacteria RepID=Q4FSI0_PSYA2 Length = 1247 Score = 1192 bits (3085), Expect = 0.0, Method: Composition-based stats. Identities = 549/1136 (48%), Positives = 748/1136 (65%), Gaps = 48/1136 (4%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL +HS+YS+ D + + PLVK AAA ALA+TD +NL VKFY A GAGIKPI Sbjct: 3 FVHLGIHSEYSITDSIVRIKPLVKAAAADNQRALALTDLSNLYATVKFYRACLGAGIKPI 62 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY----GAAGPIIDRDWL 121 +G++ ++ +E T LT+LA +N GYQN+T ++S + G P+I R + Sbjct: 63 IGSEV-----IMENEDTRLTLLAMDNEGYQNITRIVSLGFTEGRADPVNHGTPVIKRSHI 117 Query: 122 IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181 +E G+I+L DVG++L+ DE + ++ F DR + + RT R E+++ Sbjct: 118 LEHGAGVIVLFT-EKSDVGQALVGSMPEKADELITEWQASFDDRLYFAIKRTNRTGEDAF 176 Query: 182 LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241 + AA+ +P++A NDVRF++ DFDAHE RV I + L D RP+ YS QY++ Sbjct: 177 IKAAIHSGAKHHIPIIAHNDVRFLEQDDFDAHEARVCIAGSYVLADQNRPQTYSDAQYLK 236 Query: 242 SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKRAKEGL 300 ++ +M +LFADIP+ + NT+ +A RCNVT+ LG LP+FP + +TE + ++ GL Sbjct: 237 TQAQMQQLFADIPQVIDNTLRLATRCNVTLTLGINVLPEFPVPEGETTESFFRLESQRGL 296 Query: 301 EERLAFLFP---DEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVP 357 E RL LFP + R YDERLE EL+VI MGFPGYFLIVM+FI+W+K NGVP Sbjct: 297 ENRLDKLFPVDARSDHWSDIRQRYDERLEYELKVILSMGFPGYFLIVMDFIRWAKANGVP 356 Query: 358 VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEH 417 VGPGRGSGAGSLVAYAL ITDLDP+ +DLLFERFLNPERVSMPDFD+DFC+E RD+VI++ Sbjct: 357 VGPGRGSGAGSLVAYALNITDLDPIHYDLLFERFLNPERVSMPDFDIDFCIEGRDRVIDY 416 Query: 418 VADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEA 477 VA YGR+AVSQIITFGTMAAKAV+RDV R Y ++SKLIP PG+TL++A E Sbjct: 417 VAQTYGREAVSQIITFGTMAAKAVVRDVARAQSKSYFLASKMSKLIPKTPGITLSQALEQ 476 Query: 478 EPQLPEIYEAD-----EEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDE 532 EPQL ++ E+ + +MA KLEG+ RN GKHAGGV+IAP KITDF+ +YCD+ Sbjct: 477 EPQLKDLISNPDNMDYEDAIEVWEMAIKLEGICRNVGKHAGGVLIAPHKITDFSAIYCDD 536 Query: 533 EGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLD 592 EG V+QFDK DVE GLVKFDFLGLR LT+I+ A+E INKRRAK G+ L + +PLD Sbjct: 537 EGHR-VSQFDKDDVEAVGLVKFDFLGLRNLTVISAAVENINKRRAKEGKEALVLEDLPLD 595 Query: 593 DKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFI 652 D K++ +LQ ++TTAVFQLES GMK + +LQP ED+IA+ AL+RPGPL +GMV+ +I Sbjct: 596 DAKAYKLLQDAKTTAVFQLESMGMKKYLAKLQPTNIEDVIAMCALYRPGPLDAGMVEMYI 655 Query: 653 DRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAM 712 DRKHGREE+ Y H +L+P+LE T G+I+YQEQVMQI+QV++GY+LGGADMLRRAM Sbjct: 656 DRKHGREEVIY-----DHPNLEPILENTNGVIVYQEQVMQISQVMAGYSLGGADMLRRAM 710 Query: 713 GKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTL 772 GKKKPEEMAKQR +F GA GI+ + +FDL+EKFAGYGFN+SHSAAY +++YQT Sbjct: 711 GKKKPEEMAKQRDIFVTGATAQGIDEATSGGVFDLMEKFAGYGFNRSHSAAYGVLAYQTA 770 Query: 773 WLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFHVNDDGEI 831 +LK +YPAEFMAAV+T+DM+NT+ VV +++C L ++ P +N +HF + I Sbjct: 771 YLKQYYPAEFMAAVLTSDMNNTDNVVFFINDCRENFALTVVNPSVNRSEWHFVADTPTNI 830 Query: 832 VYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRL 891 +YG+GAIKGVGEG +E+I+EAR + G F++L+D C R D KK+N+R LE LI +G FD Sbjct: 831 IYGLGAIKGVGEGAVESIVEARRREGPFKDLYDFCRRVDIKKVNKRTLEGLINAGCFDDF 890 Query: 892 GPH-------------RAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSY 938 R ALM+ L A++AA+Q + IG D+FG + Sbjct: 891 AATLRPDLPSDEAYEIRGALMSQLPSAVQAAEQDRQNREIGMMDLFGEMDGVVAAPPLVM 950 Query: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998 W ++ L E+ TLGLYLTGHPI++Y E++RY G RL + T AG Sbjct: 951 TPELIWGDKHRLKAEKNTLGLYLTGHPIDEYRDELKRYTSGARLDKLADTGYNGSCYFAG 1010 Query: 999 LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDD 1058 L++ T+ + TLDD + RLEV + + ++ + L+ D ++I+ G S + Sbjct: 1011 LIIDIANFGTRN-----VITLDDGTSRLEVSCYAERFNRVKDQLKIDEVVIIKG--SIRE 1063 Query: 1059 FSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIP 1114 G L M + +AR ++ + ++I + I+ LL ++ L+ ++ IP Sbjct: 1064 RDGRLFARLDNAMSMVDARLRWLKKISIKVHGSDIN--LLTCMQPLLKSAQASIIP 1117 >UniRef50_Q6MLD4 DnaE protein n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MLD4_BDEBA Length = 1179 Score = 1191 bits (3082), Expect = 0.0, Method: Composition-based stats. Identities = 472/1191 (39%), Positives = 698/1191 (58%), Gaps = 66/1191 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL VHS+YS+++ + + KKAAA+ MPA+A+TD N+ G V+F+ A +KPI Sbjct: 3 FVHLHVHSEYSLLEAACRVKAIAKKAAAMQMPAVALTDNGNMFGAVEFFFACKDNNVKPI 62 Query: 66 VGADFNVQCDLLGDE----------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPI 115 +G D + ++ L LA NN GY+NL L S YQ G+ P Sbjct: 63 LGLDAYIAPGSRLEKKQDRDQVNTGPRRLVFLAQNNDGYRNLCKLSSIGYQEGF-YWKPR 121 Query: 116 IDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGR 175 ID + + + NE LI L+GG G+V S LR + +E F DR +LE+ RTG Sbjct: 122 IDYEVIQQYNENLICLTGGLRGEVAESFLREGPDAALAKIRQLKEIFNDRLYLEMCRTGV 181 Query: 176 PDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYS 235 + + +E ++ G+PVVA+NDV ++ D A E+ + I TL D R R + Sbjct: 182 AEWDRLNPFLLEASKITGVPVVASNDVHYMTQDDQMAQEVLICIGSNKTLSDESRFRLGT 241 Query: 236 PQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE------YFLPQFPTGDM-ST 288 + Y++ E+M ELFAD+PEA+ANT++IA+RC+V +L + Y LP FPT D S Sbjct: 242 DEFYLKKPEQMTELFADVPEAIANTLQIAERCDVKFKLKDDQGKPIYHLPTFPTDDGLSL 301 Query: 289 EDYLVKRAKEGLEERLAFLFPDEE-ERLKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347 ++ + ++AK GL R E + PEYD+RLE EL +I++MGF GYFLIV +F Sbjct: 302 KEDIARKAKAGLLVRFEEAAARGEMIPEDKIPEYDKRLEYELGIIDRMGFNGYFLIVQDF 361 Query: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 I W+K N +PVGPGRGSGAGSLVAY L+ITDLDPL LLFERFLNPER+SMPDFD+DFC Sbjct: 362 INWAKVNDIPVGPGRGSGAGSLVAYVLRITDLDPLPNFLLFERFLNPERISMPDFDIDFC 421 Query: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467 ++R +VI++V YG+++VSQIIT+G + A+A I+DVGRVLG + VD ++KLIP Sbjct: 422 QDRRQEVIQYVTRKYGQESVSQIITYGKLQARAAIKDVGRVLGMTFPEVDAVTKLIPEKL 481 Query: 468 GMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAP 527 G+ L +A E EP++ E+ E + V L+D+A+++EG+ R+AG HA GV+IA ++ AP Sbjct: 482 GINLKEAMEMEPRIGEMMEMNPTVNTLMDLAQRVEGMVRHAGIHAAGVIIADGQLVRHAP 541 Query: 528 LYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIA 587 LY +G+ V Q+D E GL+KFDFLGL+TLT IN AL++I K R K + + Sbjct: 542 LYKGADGEQVV-QYDMKHAEKIGLIKFDFLGLKTLTHINHALKLILKNRGKKIQSQM--- 597 Query: 588 AIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGM 647 IP+ D +F+M+ R +T VFQ E G+ D ++++P F D+ A+ +L+RPGP+ + Sbjct: 598 -IPMTDAATFEMMSRGDTAGVFQFEGEGITDATRKIRPSSFADVTAITSLYRPGPMAN-- 654 Query: 648 VDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADM 707 + +F DRKHG+ + Y E + VL TYGI++YQEQVM IA ++GY+LG ADM Sbjct: 655 IPDFTDRKHGKAPVEY-----LLEDTREVLSETYGIMVYQEQVMGIASRIAGYSLGEADM 709 Query: 708 LRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALV 767 LRRAMGKK EEM + R F +GA + G + + + +FDL+ KFA YGFNKSH+AAY++V Sbjct: 710 LRRAMGKKIKEEMDQHRERFMKGAIERGHDKQRSSDLFDLMYKFADYGFNKSHAAAYSVV 769 Query: 768 SYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVND 827 + QT WLK HYPAEF AA+++ ++ +TEK+V + + GL + P +N Y F V+ Sbjct: 770 TIQTAWLKCHYPAEFFAALLSTELSDTEKIVKYSKDATKRGLTVRSPSVNFSDYLFDVHG 829 Query: 828 DGEIVYGIGAIKGVGEGPIEAIIEARNK--GGYFRELFDLCARTDTKKLNRRVLEKLIMS 885 D EI +G+GAIKGVG+ +EAIIEARN F L + DT+++N++V+E LI + Sbjct: 830 D-EIYFGLGAIKGVGQNAVEAIIEARNNLPEKKFNSLDEFFNSIDTRRVNKKVIECLIKA 888 Query: 886 GAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWP 945 GAFD G HRA L+ L A K +GQ+ +F + ++ + +PW Sbjct: 889 GAFDGFGAHRAQLVAGYQKYLDRAIGLQKDREMGQSSLFDLGPSTETKV--TLEEVKPWA 946 Query: 946 EQVVLDGERETLGLYLTGHPINQY--LKEIERYVGGVRL-------------------KD 984 L E+E LG YL+ HP+ + L E+ + L KD Sbjct: 947 RTASLTYEKEVLGFYLSDHPLKGFDTLSELWTTCKVIDLPAQMPAPGSPEAEALKAAKKD 1006 Query: 985 MHPTERG-KVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLE 1043 + G K + AGL+ R ++TK+G R+ ++D +G E+++F D+ +++ L Sbjct: 1007 WKNRDAGKKRVVVAGLITELRELITKKGTRMAFGKVEDLTGSCELVIFPDSYARFEAQLR 1066 Query: 1044 KDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQ 1103 +R ++V G + ++ G K+ V +++ +K + + + L +I+ RL Q Sbjct: 1067 DERPVLVGGGLEVEE--GSAKIMVDTVSPLEDILKK-TKRMVLRLD--KINPDDYPRL-Q 1120 Query: 1104 SLEPHRSGTIPVHLYYQRA--DARARLRFGATWRVSPSDRLLNDLRGLIGS 1152 SL G V L + + R + ++ ++ + L G Sbjct: 1121 SLMKDYPGATSVSLEIELGELNRRVLMEMEEAQGINVNNEFFEGVHSLFGR 1171 >UniRef50_C6JJK2 DNA-directed DNA polymerase III alpha subunit n=5 Tax=Fusobacterium RepID=C6JJK2_FUSVA Length = 1138 Score = 1191 bits (3081), Expect = 0.0, Method: Composition-based stats. Identities = 421/1165 (36%), Positives = 680/1165 (58%), Gaps = 41/1165 (3%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 FVHL +H++YS++DG+ K + + AL M A+AITD NL G+++FY GIKP Sbjct: 4 NFVHLHLHTEYSLLDGVGKIDDYLDRTKALNMQAIAITDHGNLFGVLEFYKKAIKKGIKP 63 Query: 65 IVGADFNVQCDLLGDE---LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL 121 I+G + V + ++ + HL +LA NN GYQNL + S++Y +G+ P ID+++L Sbjct: 64 IIGLEAYVSEFSMLEKEGRIFHLVLLAENNKGYQNLLKISSESYIKGF-YYKPRIDKEFL 122 Query: 122 IELNEGLILLSGGRMGDVGRSLLRGNSAL-VDECVAFYEEHFP-DRYFLELIRTGRPDEE 179 +EG+I LS G++ R +L S VDE V Y + F D +++E+ G + Sbjct: 123 KMHSEGIIALSACMQGEIPRRILDNESEEKVDEIVNEYVDIFGKDNFYIEVQANGVKGQT 182 Query: 180 SYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQY 239 + LA+ L +VATND +++ + +I + + G + D KR R + + + Sbjct: 183 ALNEKLYNLAQKHQLKMVATNDTHYVNEGEHTLQDILICVQTGAKVADEKRMRIETDELF 242 Query: 240 MRSEEEMCE-LFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGD--MSTEDYLVKRA 296 ++S E++ + L A EA+ NT+EIA+RCNV + G++ P++ + E++L K Sbjct: 243 LKSREQIIDGLGAKYLEAVNNTIEIAERCNVNIEFGKFKFPEYEIPSCVKTIEEFLRKLV 302 Query: 297 KEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGV 356 GL +R ER+E EL VI +MG+ YF++V +FI ++K N + Sbjct: 303 YFGLSKRYPHGL---------TISVLERVEYELSVIEKMGYAAYFVVVWDFIDYAKRNRI 353 Query: 357 PVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIE 416 P+GPGRGS AGSLVAYAL+IT+LDPL+++L+FERFLNPER+SMPD D+D C E+R +VIE Sbjct: 354 PIGPGRGSAAGSLVAYALRITELDPLDYNLIFERFLNPERISMPDIDIDICQERRQEVIE 413 Query: 417 HVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFE 476 +V YG D V+QIITFGTM A+A IRDVGRV+ P VD I+KL+P + T+ + Sbjct: 414 YVIRKYGEDKVAQIITFGTMKARAAIRDVGRVMDTPLSKVDSIAKLVPFNA--TIQQTLN 471 Query: 477 AEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKH 536 + +Y D E++ +ID++ +LE R+A HA G+VI +TD PLY D + K Sbjct: 472 NVEEFKNMYLNDPEIQKVIDISARLENKVRHASIHAAGIVITKDPLTDTVPLYSDNKNKV 531 Query: 537 PVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKS 596 TQ+ ++E GL+K DFLGLR LT + ++ I + ++ ++++ IPL+ KK Sbjct: 532 VSTQYQMKELEDLGLLKMDFLGLRNLTNLQRTIDYIKEDLGED----IELSEIPLNSKKV 587 Query: 597 FDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKH 656 ++ML R +T+ VFQ+ES+G++ ++ +L+PD FED+IAL+AL+RPGPL SGMVD+FI+ K+ Sbjct: 588 YEMLSRGDTSGVFQMESQGIRKILLKLKPDRFEDIIALLALYRPGPLGSGMVDDFINGKN 647 Query: 657 GREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKK 716 G EI YP H SL+ L+ TYG+ILYQEQVM+IA +++ Y+LG AD+LRRAMGKK Sbjct: 648 GTSEIKYP-----HPSLELTLKETYGVILYQEQVMKIANIMANYSLGEADLLRRAMGKKN 702 Query: 717 PEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKA 776 + M + R F E + NG E A+++F+L++KFAGYGFNKSHSAAYAL++Y T + KA Sbjct: 703 IQIMEENREKFVERSMANGYTKEKAIEMFELIDKFAGYGFNKSHSAAYALIAYWTAYFKA 762 Query: 777 HYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIG 836 +Y + A++MT++M + E + +++ LK+ PD+N F V+ +G I++ + Sbjct: 763 YYMKHYYASLMTSEMSHVEDIAFYMEDAKVHNLKLHLPDVNRASPKFIVDKEG-IIFSLA 821 Query: 837 AIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRA 896 AIK VGEG I+E N+ G ++ D RT LN++ LE LI++GA D L +R Sbjct: 822 AIKNVGEGVSGKILEECNENGKYKNFEDFVVRTRKHGLNKKALESLILAGALDGLPGNRR 881 Query: 897 ALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERET 956 S+ L A + K + I Q ++FG + + + + +L E+E Sbjct: 882 QKFESVDKILDYATRKIKEDEIQQMNLFG--EAKSSLGVFTLPQIPEYSLEELLAREKEY 939 Query: 957 LGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKR-GNRIG 1015 LG Y + HP++ Y + IE Y R+ ++ + ++ G++ + +VTK+ G + Sbjct: 940 LGFYFSAHPLDNYRRLIEVY-RLSRIAELKEEKNVQIFRTCGILREIKKIVTKKTGQIMC 998 Query: 1016 ICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSG--GLKMTAREVMDI 1073 + L+D ++ ++F + + + +I+ + G V D F G K+ + + + Sbjct: 999 LFELEDYYDKINCIVFPRDYAENAHIFMEGKIVYIEGSVQTDYFKGAETKKLIVKNIKFL 1058 Query: 1074 DEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGAT 1133 D+ + + ++ D +RL++ + + T L + + Sbjct: 1059 DDIVRD--KKFVAYILLKEEDKDKFSRLKKIILSYPGET---KLSFAIKTKTVKEIRTTK 1113 Query: 1134 WRVSPSDRLLNDLRGLIGSEQVELE 1158 ++++PS ++++ LIG +++ ++ Sbjct: 1114 YKIAPSRLFIDEIIDLIGIDKLTIK 1138 >UniRef50_D1NB43 DNA polymerase III, alpha subunit n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1NB43_9BACT Length = 1187 Score = 1189 bits (3077), Expect = 0.0, Method: Composition-based stats. Identities = 444/1175 (37%), Positives = 652/1175 (55%), Gaps = 39/1175 (3%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 FVHL +H+ YSM+DG L++ A M A+AITD + G+ +F+ GAGI P Sbjct: 4 DFVHLHLHTHYSMLDGACTVKGLLQLAQEHEMNAMAITDHGYMGGVEEFHQVLSGAGINP 63 Query: 65 IVGADFNVQCDLLGD---------ELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPI 115 I+G + V + D HL +L N GY +L ++S A + G+ P Sbjct: 64 IIGVEAYVAPGDMRDFDSNKPFNRGGFHLILLCENEDGYSSLCKMMSAANKDGFHY-KPR 122 Query: 116 IDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRTG 174 ID++ + + ++GLI S G++ + L+G+ ++ + Y + F D +F+EL+ G Sbjct: 123 IDKELMRQYHKGLICTSACIGGEISQYYLQGDVKRAEQALGEYLDIFGRDNFFIELMDHG 182 Query: 175 RPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNY 234 +E VELA+ L ++ATNDV ++ D +AHEI + I G L + K R Sbjct: 183 MEEERKCNKFLVELAKKNDLRLIATNDVHYMRKEDAEAHEIMLCIQTGARLAE-KHFRFP 241 Query: 235 SPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE--YFLPQFPTGDMSTEDY- 291 +P+ Y +SE EM ELF ++PE++ NT IA+RC++ P+F D D Sbjct: 242 APEFYFKSEAEMKELFRELPESITNTRLIAERCSMKFHYVPEVNHYPKFYMPDGRLADRN 301 Query: 292 -LVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQW 350 L + + +E R F E R+ + ER+E EL VI + GF YF +V +FI+ Sbjct: 302 DLREVCYDNMEYRYGFDPRKTPELDDRQKKILERMEYELGVIEKTGFISYFFVVSDFIRH 361 Query: 351 SKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEK 410 +K +PVGPGRGSGAGSLVAY +ITD+DPL F+L FERFLNPERVS PDFDVDFC + Sbjct: 362 AKGQDIPVGPGRGSGAGSLVAYLTRITDIDPLRFNLFFERFLNPERVSPPDFDVDFCERR 421 Query: 411 RDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMT 470 R +VI++V YG D+V+QI T+G + AKAV++DV RVLG + F +R+SK+IP DP MT Sbjct: 422 RGEVIDYVRGRYGFDSVAQICTYGQLKAKAVVKDVARVLGCDFEFGNRLSKMIPEDPKMT 481 Query: 471 LAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYC 530 L KA E +L E E D + + A+ LEG+ R G HA GV+I ++ + PL Sbjct: 482 LDKAVEQNKELAEKIETDPMIAKVWKFAKVLEGLNRQTGIHAAGVIIGDQRLDNLVPLAR 541 Query: 531 DEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIP 590 V F E GL+K DFLGL+TLTII AL+MI K +D IP Sbjct: 542 SA-SDSMVVPFPAHPCEEQGLLKMDFLGLKTLTIIKDALDMIKKDYG----IVIDTMKIP 596 Query: 591 LDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDN 650 LDD K+F+MLQR +T AVFQLES GM++L + + E +IAL+A++RPGP+Q + + Sbjct: 597 LDDPKTFEMLQRGDTVAVFQLESGGMQNLCRSFGVETLEHIIALLAIYRPGPMQ--FIPD 654 Query: 651 FIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRR 710 FI RK G E+I Y H ++ L+ TYGI+LYQEQ+MQ+ QVL+G+TLGGAD+LRR Sbjct: 655 FIRRKKGEEKIIY-----DHPLMEDCLKETYGIMLYQEQIMQVVQVLAGFTLGGADILRR 709 Query: 711 AMGKKKPEEMAKQRSVFAEGAEK-NGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSY 769 A+GKKK + +AKQ+ F +G ++ N I+ +LA +I++ ++ FAGYGFNKSHSAAY V Y Sbjct: 710 AIGKKKVDVLAKQKEKFFKGCKETNNIDEKLADQIWEKIKLFAGYGFNKSHSAAYGFVCY 769 Query: 770 QTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDG 829 QT +LKA+YP +FMAA++ ++++ E++ +++ C MG+ +LPPD+NS F D+G Sbjct: 770 QTAYLKANYPVQFMAAILNGEIESAERIAFMINTCKEMGINVLPPDVNSSDIRFS-TDNG 828 Query: 830 EIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFD 889 I +G+GAIKGVGE IIE+R K G F D C R + +N R+LE L +GA D Sbjct: 829 NIRFGLGAIKGVGEVAASQIIESRQKDGKFETFLDFCERCGSN-VNSRMLEHLTRAGALD 887 Query: 890 RLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQI--EQSYASCQPWPEQ 947 LG R+ ++ + A A+ A GQ +F +L + ++ Sbjct: 888 GLGLRRSQILAIAEPMMAFAAGRARDRAAGQGSLFDLLDGGDADDACSVPIPDIPEFDKE 947 Query: 948 VVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMV 1007 +L E+E LG Y+TGHP++ Y E+ R V ++ + I AG+V + Sbjct: 948 DILKSEKELLGFYVTGHPLDPY-AELVRTYSTVPIRSLEELNDNAQIRIAGMVNTFTQKL 1006 Query: 1008 TKR-GNRIGICTLDDRSGRLEVMLFTDALDKYQQL---LEKDRILIVSGQVSFDDFSGGL 1063 +K G + GI L+D E M++ AL+ + + L++ VS D Sbjct: 1007 SKNSGKQFGILLLEDLDASCECMIYERALNALTEANVDMSPGTPLLLEATVSKRDEQEKP 1066 Query: 1064 KMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRAD 1123 ++ +V + EA L I L Q+ + L L ++ G + D Sbjct: 1067 RVIVDKVTPLAEAPATLTEKLHIHLYADQVKSETLRELAKACFE-IPGDTLLVTCVVGKD 1125 Query: 1124 ARARLRFGATWRVSPSDRLLNDLRGLIGSEQVELE 1158 ++ + LL + L+G L+ Sbjct: 1126 DSVTFIESRRQEITVTHELLTTIDRLLGPGHYRLK 1160 >UniRef50_C1XIK2 DNA polymerase III, alpha subunit n=2 Tax=Meiothermus RepID=C1XIK2_MEIRU Length = 1257 Score = 1185 bits (3065), Expect = 0.0, Method: Composition-based stats. Identities = 457/1217 (37%), Positives = 664/1217 (54%), Gaps = 92/1217 (7%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAAL--GMPALAITDFTNLCGLVKFYGAGHGAGI 62 +F HL H+ +S++DG A+ L+K + P LA+TD N+ G V+FY G+ Sbjct: 21 KFAHLHQHTQFSLLDGAARLKDLLKWVKQVSPEEPMLAMTDHGNMFGAVQFYKYATELGV 80 Query: 63 KPIVGADFNVQCDLLGDE---------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 KPI+G + V + D HLT+LA N GYQNL+ L S+AY G+ Sbjct: 81 KPIIGYEAYVAAESRFDRKQGKGLDGGYFHLTLLAQNMEGYQNLSRLASRAYLEGF-YGK 139 Query: 114 PIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIR 172 P IDR+ L E N G+I LSG ++ + +L+ ++ + Y F P+RYF+E+ Sbjct: 140 PRIDREILREHNAGIIALSGCLGAEIPQFILQERFEDAEKRLQEYLAIFGPERYFIEIQN 199 Query: 173 TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 G ++ E A+ GL +VATND ++ D +AH + +A+ T DDP R + Sbjct: 200 HGLAEQHKVNRVLKEFADKYGLGLVATNDGHYVKKDDAEAHAVLLAVQSKATWDDPNRWK 259 Query: 233 NYSPQQYMRSEEEMCELFAD--------IPEALANTVEIAKRCNVTV--RLGEYFLPQFP 282 + Y++S +EM + F D + E N+V I + C V + + +Y +P++P Sbjct: 260 FPCDEFYVKSPQEMRQTFEDERNLWGSRMDELFDNSVNIGRMCEVELVPKKVQYRIPKYP 319 Query: 283 TGDMSTED-YLVKRAKEGLEERLAFLF-------------------------------PD 310 + TE Y + GL +R D Sbjct: 320 LPEGRTEVVYFRELTFNGLLKRYPDRVTPELYREFLRKLGRPVPHGDGEVLALELARIED 379 Query: 311 EEERLKRRPEYDE-----------RLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVG 359 E PE E R EL V+ +MGFPGY LIV +FI W+K+NG+ VG Sbjct: 380 LEATRAHLPELREGIQWDGWAILSRAIYELTVVERMGFPGYLLIVSDFINWAKNNGISVG 439 Query: 360 PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVA 419 PGRGS AGSLV YA +IT++DPLE++LLFERFLNP RVSMPD D DF +R +VIE+V Sbjct: 440 PGRGSAAGSLVTYATRITNIDPLEYNLLFERFLNPARVSMPDIDTDFSDVRRGEVIEYVR 499 Query: 420 DMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEA 477 YG + V+QI TFGT+A+KA I+D RV G P D ++KLIP G M L KA E Sbjct: 500 QRYGDEMVAQIGTFGTLASKAAIKDAARVFGLPVKKADELAKLIPVTFGKPMPLDKAIET 559 Query: 478 EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHP 537 P L E D VK ++++A+KLEG++R + HA GVVI+ + D+ PL + Sbjct: 560 IPDLRAEMEKDPLVKRVLEVAQKLEGLSRQSSVHAAGVVISDVPLRDYIPLMRAGDTGAK 619 Query: 538 VTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSF 597 VTQ+D VE G +K DFLGLRTL+ ++ +I + + LD +P+DD K+F Sbjct: 620 VTQYDMGSVEALGFLKMDFLGLRTLSFLDECKRIIKESKGVE----LDYDNLPIDDAKTF 675 Query: 598 DMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHG 657 ++L R ET VFQL+S GM ++ L+P +D+IAL AL+RPGP+++ + +I R HG Sbjct: 676 ELLGRGETKGVFQLDSAGMTSAVRGLKPRRIQDIIALGALYRPGPMEN--IPTYIRRHHG 733 Query: 658 REEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKP 717 REE+SYP + ++P+LE TYGI +YQEQ+MQIA ++GY+LG AD+LRRAMGKKK Sbjct: 734 REEVSYPQFPNAEKFIRPILEETYGIPVYQEQIMQIATAVAGYSLGEADLLRRAMGKKKM 793 Query: 718 EEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAH 777 EEM KQR+ F EGA KNGI AE A ++FDL+E FA YGFNKSH+AAYA+++YQT ++KAH Sbjct: 794 EEMVKQRAQFKEGAAKNGIPAEEADRLFDLLEAFANYGFNKSHAAAYAILTYQTAYVKAH 853 Query: 778 YPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGA 837 +P EF AAV+T + +++KV + G+++LPPDIN + F + +++G+ A Sbjct: 854 FPVEFFAAVLTVERHDSDKVAEYIRAARTAGVEVLPPDINQSGFSFRALEK-SVLFGLSA 912 Query: 838 IKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAA 897 +K VGE P E I+ R +GG ++ L D R D N+RV+E LI +GAFD GP R Sbjct: 913 VKNVGETPTELILRERERGGPYKSLPDFLRRLDGTVANKRVVESLIKAGAFDAFGP-RGP 971 Query: 898 LMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETL 957 ++ +L D LK A + G +FG E +E + L E+E L Sbjct: 972 MLAALDDLLKWAQAEREQAQSGMMGLFG------ESLEPVIPAVPQLDAITQLRMEKEAL 1025 Query: 958 GLYLTGHPINQYLKEIERYVGGV-----RLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012 G+Y+TGHP+++Y E + ++ + AG+V TK G Sbjct: 1026 GIYVTGHPLSRYQGLREAASCTIEELPQAFAELKGNRNRARLLLAGMVEGIVRKPTKSGG 1085 Query: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072 + TL D +G +EV+ F A DK + +D ++V+ +V D L++ A+EV Sbjct: 1086 MLVRFTLADETGAVEVVAFGRAYDKISPRIAEDAAVLVAVEVEPDGEGETLRVVAQEVFP 1145 Query: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGA 1132 E E + L + L +D++ L LR L+ +G +PV L + A + Sbjct: 1146 YHEL-EGLPKVLELELDMALLDEEKLLDLRSRLDE-VAGPLPVQLKVRGPGGWALVEARE 1203 Query: 1133 TWRVSPSDRLLNDLRGL 1149 V ++ L L+ L Sbjct: 1204 ---VRAAEEALPVLKDL 1217 >UniRef50_UPI0001C3188F DNA polymerase III, alpha subunit n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C3188F Length = 1178 Score = 1183 bits (3062), Expect = 0.0, Method: Composition-based stats. Identities = 422/1189 (35%), Positives = 647/1189 (54%), Gaps = 63/1189 (5%) Query: 7 VHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIV 66 HL VHS+YS++DG K L +AAA PAL +TD + G V+ Y A IKP++ Sbjct: 10 AHLHVHSEYSLLDGACKIDALAARAAAFDQPALGLTDHGVMNGSVEMYKACKKHDIKPLL 69 Query: 67 GADFNV----QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLI 122 G + V E HLT+LA N+ GY+NL L S Y G P +D + + Sbjct: 70 GCEVYVVDDRHFRAGRAERNHLTLLAQNDVGYRNLVKLSSTGYLEGLHRGKPGVDFEIMS 129 Query: 123 ELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRTGRPDEESY 181 + +EG+I L+G + L+ V F ++ + E+ + G D++ Sbjct: 130 QHSEGIIALTGCLASRFCQRLVNDRPDEARAHVDDLMNIFGREQVYFEVQKNGIADQDKA 189 Query: 182 LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241 V +A G P+V T DV ++ D+ H + + TL +PK + + Y++ Sbjct: 190 NEGIVRIAREVGRPLVGTGDVHYLRREDYHHHTALLCVQTKSTLAEPK-MTFDTNEFYLK 248 Query: 242 SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTE-DYLVKRAKEGL 300 S +EM + FA+ P+AL T+E+A+RC V + LG +P +PT + E YL + +GL Sbjct: 249 SNQEMADAFAEWPDALPTTLEVAERCQVEIPLGGQLIPSYPTPNGEEERAYLRQLVLDGL 308 Query: 301 EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360 R P ER+E EL VI++MGF YFLIV +F+++SK+NGV VGP Sbjct: 309 HLRYGNPPP---------AAAVERMEMELAVIDKMGFNAYFLIVWDFVRYSKENGVAVGP 359 Query: 361 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420 GRGS AGS+VAY L ITD+DPL +DLLFERFLNPERVSMPD D+DF + R++VI +V + Sbjct: 360 GRGSAAGSIVAYCLAITDVDPLAYDLLFERFLNPERVSMPDIDIDFSVRGRERVIRYVTE 419 Query: 421 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIP---PDPGMTLAKAFEA 477 YGR++V+QIITFG M +A RD RVLGH YG D+++KLIP + + Sbjct: 420 KYGRESVAQIITFGKMFPRAATRDAARVLGHDYGAGDKLAKLIPDPIMGRPPSFDDCLQP 479 Query: 478 EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGK-- 535 L +++ + ++D+AR LEG+ RN+ HA VVIA +TD PL + G Sbjct: 480 GEPLRGEVDSNPVSRQIVDVARGLEGIVRNSSIHAAAVVIADRPLTDIVPLQLADAGTDD 539 Query: 536 ------HPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAI 589 VTQ+ VE GL+K DFLGLR L +I AL++I + D+ + Sbjct: 540 RGDKVYRTVTQYSMKPVEELGLLKMDFLGLRNLDVIEDALDIIERSTGTRP----DMTTL 595 Query: 590 PLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVD 649 PLDD K++DM+ R ++ VFQ ES GM++ +K+++P ED+IAL AL+RPG + + Sbjct: 596 PLDDGKTYDMIARGDSVGVFQFESEGMRETLKKVRPTELEDLIALNALYRPGAMDQ--IP 653 Query: 650 NFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLR 709 + K E ISYPD E L+P+LE T G+I+YQEQ MQIA+ L+G++ AD LR Sbjct: 654 TYARGKRNPESISYPD-----ERLRPILESTNGVIVYQEQAMQIAKSLAGFSGAKADDLR 708 Query: 710 RAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSY 769 +A+GKK MA+ + F EG + + ++ ++ EK A Y FNK+H+A YAL++Y Sbjct: 709 KAIGKKNRAAMAELKPEFIEGCRASRTSEQVIEWLWATNEKSADYSFNKAHAACYALIAY 768 Query: 770 QTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDG 829 +T WLKA++PAE+MAA++++ MD +KV V + +MG++ILPPD+N + F V DG Sbjct: 769 RTAWLKANHPAEYMAALISSVMDTKDKVPFFVAQTEQMGIEILPPDVNESDHDFMVV-DG 827 Query: 830 EIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFD 889 I +G+ A+KGVG +E I AR + G F L+D C R D K +N++ +E LI GAF Sbjct: 828 NIRFGLDAVKGVGYAAVEGIKRAREEDGPFTSLWDFCERVDGKAVNKKAIEALIKCGAFS 887 Query: 890 RLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEE----------PEQIEQSYA 939 G R ++ L A A + + IGQ +F + E Sbjct: 888 STGASRKGMLGVLEQAQAAGQKAQQDALIGQGSIFDLGPEPGAANGAAASAFAAPSHPGI 947 Query: 940 SCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGL 999 + + + +L E+E++GL+++ HP+ + + R L ++ + G +T G+ Sbjct: 948 PAEEFDQAEMLAAEKESIGLFISAHPLKAVREAM-RVKVDCTLAELSDRKDGDWVTVGGI 1006 Query: 1000 VVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDF 1059 + + + TKRG+ + TLDD G +E+++F L ++ + D ++ + G+V D Sbjct: 1007 ITQCKRLRTKRGDHMMFATLDDLEGTVEILIFGRVLAASEEAFQMDSVITLRGRVDHKDA 1066 Query: 1060 SGGL------KMTAREVMDIDEAREKYAR------GLAISLTDRQIDDQLLNRLRQSLEP 1107 S ++ A +I++ARE+ A+ + + L + +++ L+ E Sbjct: 1067 SKTTVVVQDAELFAPSEAEIEKAREEAAKIPTGPPPVRLRLDCTALRAGVIDDLKAVFET 1126 Query: 1108 HRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSEQVE 1156 G V L + + LR G T++VS + L +L ++GS +E Sbjct: 1127 F-PGESVVVLEMHTSGGQRTLRLGPTYKVSRNAALQAELDHVLGSAMLE 1174 >UniRef50_Q0C1C2 DNA polymerase III, alpha subunit n=2 Tax=Alphaproteobacteria RepID=Q0C1C2_HYPNA Length = 1140 Score = 1183 bits (3061), Expect = 0.0, Method: Composition-based stats. Identities = 489/1161 (42%), Positives = 688/1161 (59%), Gaps = 33/1161 (2%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M++P F+HL + S +S+++ + A L K MPA+A+TD L G ++ Sbjct: 1 MTKPVFIHLAIRSSFSLLESMITPADLAKWCKQYSMPAMAVTDRNCLFGALELSIKLSDY 60 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 G++PI+ F+V EL LT A ++ GY+ L L S+AY P + + + Sbjct: 61 GVQPIMACCFDVTDGSPKAELFRLTAYAQDDVGYKRLMFLSSRAYLEADDG-VPRLHKKY 119 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 180 L+E EGLILL+GG G+V R +L+G A ++ +P R ++E+ R G +E Sbjct: 120 LLENTEGLILLTGGAEGEVARHILKGRLADARTELSTLATAYPGRCYVEITRHGTQEEIK 179 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 VELA GLP+VAT+D RF+ D AH+ + I +G L R R P QY+ Sbjct: 180 SETGLVELAYELGLPLVATHDARFLKPEDVTAHDAMMCIANGQYLGQDDRKR-VEPDQYL 238 Query: 241 RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKEGL 300 +S EEM LFAD+PEA+ANT EIA RC+V + LP F S + L +A++GL Sbjct: 239 KSPEEMEVLFADLPEAIANTSEIAIRCSVRAETRKPILPNFSKEGRSEGEELALQARQGL 298 Query: 301 EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360 EERLA + + R Y +RLE EL +I++MGFPGYFLIV +FI+W+K NG+PVGP Sbjct: 299 EERLA----EADRLYAERQVYLDRLEYELGIIDRMGFPGYFLIVSDFIKWAKANGIPVGP 354 Query: 361 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420 GRGSGAGSLVA+ L ITDLDPL FDLLFERFLNPERVSMPDFDVDFC E+R +VI +V + Sbjct: 355 GRGSGAGSLVAWVLLITDLDPLRFDLLFERFLNPERVSMPDFDVDFCQERRGEVIRYVRE 414 Query: 421 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGM--TLAKAFEAE 478 YG D+V+ IITFGT+ AKAV+RDVGRV+ PYG VDR++KLIP +P TL +A AE Sbjct: 415 KYGADSVAMIITFGTLQAKAVVRDVGRVMQMPYGQVDRLAKLIPFNPAKPPTLDEAIAAE 474 Query: 479 PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538 P+ + AD V LID AR LEG+ RNAG HA GVVIA + + PLY D P Sbjct: 475 PKFDDEIAADARVGELIDTARALEGMYRNAGTHAAGVVIADRPLVELVPLYNDPRADLPA 534 Query: 539 TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598 TQF+ E AGLVKFDFLGL+TLT+I+ AL I + + A +DD +++ Sbjct: 535 TQFNMKYAEMAGLVKFDFLGLKTLTVIDRALNFIRRDGG-----DVGPAWRSMDDPATYE 589 Query: 599 MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658 ++ ET VFQLE GM+D ++R++P+ ED+IA+++L+RPGP+++ + ++ K Sbjct: 590 LMASGETLGVFQLEGAGMRDTLRRVRPNNIEDLIAIISLYRPGPMEN--IPVYVQGKEDP 647 Query: 659 EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718 + Y QH LKPVLE TYG+ +YQEQVM++AQ ++GY+LG AD+LRRAMGKKK E Sbjct: 648 ASVRY-----QHPDLKPVLEATYGVPVYQEQVMRMAQEIAGYSLGEADLLRRAMGKKKLE 702 Query: 719 EMAKQRSVFAEGAEKN-GINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAH 777 EM QR F EGA N G+ LA +IFD +EKFAGYGFNKSH+AAYAL+ Y T +LK H Sbjct: 703 EMIAQRRRFVEGAAANKGMKDSLANEIFDTMEKFAGYGFNKSHAAAYALIGYHTAFLKCH 762 Query: 778 YPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGA 837 YP EF+AA M+ D+ NT+K+ E R+ L +L PDINS F VN+DG IVY +GA Sbjct: 763 YPKEFLAASMSLDIGNTDKLAAFFQEAKRLRLHVLAPDINSSQPDFDVNEDG-IVYALGA 821 Query: 838 IKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAA 897 IKGVG ++ + R++GG F++L+D R D K +N++ LE L SGA D L +RA Sbjct: 822 IKGVGVEAMKHVSAVRSEGGPFKDLYDFAERVDPKHVNKKALESLAKSGALDCLEGNRAR 881 Query: 898 LMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETL 957 + + + HA+ + GQ +FG E + + +PW Q LD E +++ Sbjct: 882 VFAVVPMLAQYCASHAEDRSGGQGGLFG---ESEPALRPEFPPSRPWTAQQKLDEEFKSI 938 Query: 958 GLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGIC 1017 G Y +GHP++ L I+R + ++ GK + G+V +KRG + Sbjct: 939 GFYFSGHPLDDVLTSIDRDRVTLAMEVHERAGDGKPLEMIGIVRTRNDKPSKRGGKFAFL 998 Query: 1018 TLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077 T+ D +G LE+M+F + L +Y LL+ + + ++ V+ L++ ++++ AR Sbjct: 999 TISDPTGELEMMVFNEGLQQYGDLLQPGKAVAIT--VTAKLNGEELRLNLDRAVELEAAR 1056 Query: 1078 EKYARG-LAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLY--YQRADARARLRFGATW 1134 G L + L D + L + + LE G V + R +R T+ Sbjct: 1057 LSKPSGSLMVRLGPD-ADPEDLAGVIRRLEQVSDGDRGVIIVELILRDGRIVTMRLPQTY 1115 Query: 1135 RVSPSDRLLNDLRGLIGSEQV 1155 + + L+ + G E+V Sbjct: 1116 TIGLRAQ--RALKEVPGVEKV 1134 >UniRef50_D1NST8 DNA polymerase III, alpha subunit n=1 Tax=Bifidobacterium gallicum DSM 20093 RepID=D1NST8_9BIFI Length = 1185 Score = 1181 bits (3056), Expect = 0.0, Method: Composition-based stats. Identities = 436/1204 (36%), Positives = 656/1204 (54%), Gaps = 69/1204 (5%) Query: 1 MSEP-RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59 M++ FVHL H+ YS++DG +K LV++ LGM A+ ITD N+ G + + Sbjct: 1 MTQTADFVHLHNHTHYSLLDGASKIPNLVRRTKELGMNAVGITDHGNMHGAYELWSEAVA 60 Query: 60 AGIKPIVGADFNVQCDLL---------------------GDELTHLTVLAANNTGYQNLT 98 G+KPI+G + + G +THLT+ A N+ G NL Sbjct: 61 NGVKPILGIEAYATPETSRFDKSRVHWGTEEQRRDDVSGGGLITHLTLWAENDEGLVNLL 120 Query: 99 LLISKAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFY 158 S A G P +D++ L +G+I SG G V L G Sbjct: 121 KASSVANLEGRVMRYPRMDKEVLQTYAKGIICGSGCPSGIVQTRLRLGQFDEALRAAGEL 180 Query: 159 EEHFP-DRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRV 217 ++ F + +++EL+ E + + +A+ P++ATND ++ D A + + Sbjct: 181 QDIFGKENFYIELMDHNLSIERKVTNDLLTIAKKLDAPLLATNDSHYVMPEDASAQDAML 240 Query: 218 AIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEY- 276 I+ G TLD+P R + Y+R EEM ELF ++PEA NT+E+A+RCNV E Sbjct: 241 CINSGSTLDEPGRFKFEGEGYYLRPAEEMRELFKELPEACDNTLEVAERCNVIFDDHEDG 300 Query: 277 -FLPQF--PTGDMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVIN 333 F+P+F P G T +L K +EGLE+R P+ E ++ + E +I Sbjct: 301 AFMPEFDCPEGWDETSLFLRK-VEEGLEKRYDGNPPE---------EVLKQADYECGIIC 350 Query: 334 QMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLN 393 QM F GYFL+V ++I W+K++ V VGPGRGS AG++VAYA+ ITDLDPL+ L+FERFLN Sbjct: 351 QMQFCGYFLVVADYINWAKEHDVMVGPGRGSAAGAMVAYAMGITDLDPLQHGLIFERFLN 410 Query: 394 PERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPY 453 PERVS+PD DVDF E R +V+++VAD YG D V+Q + +GT+ K ++D R++G+ + Sbjct: 411 PERVSLPDIDVDFDPEGRMRVLDYVADKYGHDKVAQCVIYGTIKTKQALKDSARIMGYEF 470 Query: 454 GFVDRISKLIPPDP--GMTLA---------KAFEAEPQLPEIYEADEEVKALIDMARKLE 502 +R++K +PP G +A K + + E+Y++D +VK + D A +E Sbjct: 471 SMGERVTKALPPAQTGGKDIAIRDIFNPDAKRYAEAREYRELYDSDADVKRITDQAMGIE 530 Query: 503 GVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTL 562 G+ R G HA ++ ITD +PL +G T F+ E GLVK DFLGL L Sbjct: 531 GLIRQTGVHACATIMGSKPITDTSPLLERTDGTVTTT-FEYHTCETLGLVKMDFLGLSNL 589 Query: 563 TIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKR 622 T+I+ L+ I NG+ +D IPLDDK +F++L ET VFQL+S GM+ L+K Sbjct: 590 TVIHDTLKNIEN----NGKESIDYTKIPLDDKATFELLSSGETLGVFQLDSDGMRSLLKM 645 Query: 623 LQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYG 682 L+PD F D+ AL+AL+RPGP+ N+ RK+G+++I P E+L+P+L+ TYG Sbjct: 646 LRPDNFSDISALIALYRPGPMGMDSHTNYAKRKNGQQQID-PIHPEVAEALEPILKETYG 704 Query: 683 IILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAM 742 +I+YQEQ+ A++L+GY+LG AD+LRRAMGKKKPE +AK++ F +G + +G + E A Sbjct: 705 LIVYQEQIQFAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFQGMKDHGYSEEAAQ 764 Query: 743 KIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVD 802 ++D+ FAGY FNK+HSAAY L+SY T +LKAHYP EFMAA++ +N +K + Sbjct: 765 AVWDVFLPFAGYAFNKAHSAAYGLISYWTAYLKAHYPVEFMAALLQNAKNNKDKTALYLG 824 Query: 803 ECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKG-GYFRE 861 E RMG+K+L PD+N LY + D + +G+GA++ VGE ++ II RN G G + Sbjct: 825 EARRMGIKVLSPDVNESLYEYSAVGD-VVRFGLGAVRNVGESAVQDIIAERNNGKGKYVN 883 Query: 862 LFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQA 921 D R LNRR++E LI +GAFD + P+R AL A+ + + +A GQ Sbjct: 884 FMDYIQRVPLPALNRRLVESLIKAGAFDSIEPNRRALFQVHEAAIDSYVNIKRKQAEGQF 943 Query: 922 DMFGVLAEEPE-----QIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEI--E 974 D+F L + + + W ++ L+ ERE LGLY++ HP++ + Sbjct: 944 DLFADLDGDEKSDTMGDARIDIPDIEEWDKKTKLNFEREMLGLYVSDHPLSGMQSVLAGL 1003 Query: 975 RYVGGVRLKDMHPTERGKV-ITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTD 1033 R + RL D P + +T AGLV V+KRGN + T++D ++ MLF Sbjct: 1004 REMSIARLIDRAPQMEDRTQVTIAGLVTHVERKVSKRGNAWALITVEDMESSIQCMLFGK 1063 Query: 1034 ALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQI 1093 + L D ++ + G V D + L+ T +V D++ + +R L I L R + Sbjct: 1064 VYEANAAELAVDTVIQIRGTVDVRDETVSLRATEMQVADLEN---EDSRPLVIVLPQRVL 1120 Query: 1094 DDQLLNRLRQSLEPHRSGTIPVHLYYQRADARAR-LRFGATWRVSPSDRLLNDLRGLIGS 1152 D L++L ++L H G V L AR L G +R+ L +++ L G Sbjct: 1121 DQHRLDQLGRTLTNH-PGYCEVKLAVVDDQGAARVLTLGDRFRIKRDTSLFAEIKVLFGP 1179 Query: 1153 EQVE 1156 +E Sbjct: 1180 HSIE 1183 >UniRef50_B1XVK6 DNA polymerase III, alpha subunit n=21 Tax=Burkholderiales RepID=B1XVK6_POLNS Length = 1205 Score = 1180 bits (3054), Expect = 0.0, Method: Composition-based stats. Identities = 550/1221 (45%), Positives = 769/1221 (62%), Gaps = 79/1221 (6%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M+ PRFVHLRVHS++S+ DG+ + V A GM ALAITD +NL GLV+FY A + Sbjct: 1 MALPRFVHLRVHSEFSITDGVVRIDDAVAAAVKDGMGALAITDLSNLFGLVRFYTAARSS 60 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 GIKPI GAD + D+ L +L N++GY NL L+S+A +D W Sbjct: 61 GIKPITGADVWISNPQDPDQPHRLLLLVQNHSGYLNLCELLSRASLDNQSRGRAEVDSAW 120 Query: 121 LIELNE-------------GLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYF 167 E GLI LSG RMG+VG +LL G + YE+ FP ++ Sbjct: 121 FSEPAAKTEDKAAKRTLPYGLIALSGARMGEVGAALLAGQADQAKIVARRYEKLFPKSFY 180 Query: 168 LELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDD 227 +E+ R G P +E +L A LA LPVVAT+ V+F+ SDF AHE RV I +G L + Sbjct: 181 IEVQRGGNPQDERHLQLACHLASELDLPVVATHPVQFMQRSDFTAHEARVCIAEGELLGN 240 Query: 228 PKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM- 286 P+R + ++ +QY ++EEM + FAD+P ALAN+VEIAKRCN+++ LG+ LP FPT Sbjct: 241 PRRTKKFNEEQYFLTQEEMEKRFADLPVALANSVEIAKRCNLSLVLGQPRLPDFPTPPGI 300 Query: 287 STEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVME 346 + ++YL+ +++ GLE + FPD EER K Y ERL E++ I+QMGFPGYFLIV + Sbjct: 301 TLDEYLLAQSEVGLERHMERNFPDPEERAKEMARYHERLVFEVKTISQMGFPGYFLIVAD 360 Query: 347 FIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 406 FI W+K+NGVPVGPGRGSGAGSLVAY+L ITDLDPL ++LLFERFLNPERVSMPDFD+DF Sbjct: 361 FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 420 Query: 407 CMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPD 466 C RD+VI++V D YG+DAVSQI TFGTMAA+A IRDVGRVL Y FVD I+KL+P Sbjct: 421 CQHGRDRVIQYVKDKYGKDAVSQIATFGTMAARAAIRDVGRVLEQGYNFVDGIAKLVPNK 480 Query: 467 PG--MTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524 PG MT+ A + E QL E + ++EV+ L+ +A++LEG+TRN G HAGGV+IAP ++TD Sbjct: 481 PGQYMTIEMAKKKEKQLAEREKNEDEVRQLLSLAQQLEGMTRNVGMHAGGVLIAPGRLTD 540 Query: 525 FAPLY----CDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNG 580 F PLY D++ ++QFDK DVE GLVKFDFLGL TLTI+ A I A Sbjct: 541 FCPLYTQESKDQDSSSVISQFDKDDVEAVGLVKFDFLGLTTLTILAAAERWIKALHADR- 599 Query: 581 EPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRP 640 +I IPLDD+K+FD+L+R+ T AVFQLESRGM+ +++ +PD FED+IALVAL+RP Sbjct: 600 -RDWNIGEIPLDDEKAFDVLKRANTVAVFQLESRGMQGMLREAKPDRFEDIIALVALYRP 658 Query: 641 GPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGY 700 GP+ ++ +FI+RKHGR+++ YPD ++PVL TYGI++YQEQVMQ+AQ++ GY Sbjct: 659 GPMD--LIPDFIERKHGRQKVEYPD-----PRIEPVLRETYGIMVYQEQVMQMAQMIGGY 711 Query: 701 TLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSH 760 +LGGADMLRRAMGKKKPEEMA+ R +F++GA+ GI+ A +I+DL+E+FAGYGFNKSH Sbjct: 712 SLGGADMLRRAMGKKKPEEMAQHRKIFSDGAKAGGISEGKANEIYDLMERFAGYGFNKSH 771 Query: 761 SAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGL 820 +AAYAL++YQT WLKA+YPAEFMAA ++ MD+T+KV L D+C +++ PDIN+G+ Sbjct: 772 AAAYALLAYQTAWLKAYYPAEFMAANLSLAMDDTDKVKILYDDCLVNNIRVFSPDINTGV 831 Query: 821 YHFHVNDDGE---------IVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDT 871 Y F + + YG+GA++G GE IE+I++AR GG F++LFD CAR D Sbjct: 832 YEFTPLRAPDAAPDSPISHVRYGLGAVRGTGEAAIESIVKARETGGPFKDLFDFCARVDR 891 Query: 872 KKLNRRVLEKLIMSGAFDRLGPH-----------RAALMNSLGDALKAADQHAKAEAIGQ 920 +++NRR +E L+ +GAFD L R+ L+ SL +I Q Sbjct: 892 RQVNRRAIEALMRAGAFDDLYRDSVPAGGNLYDIRSTLLASLAR--AIEAAEQAEASIYQ 949 Query: 921 ADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGV 980 +F V EE + + W E+ L E+ LGL LTGH + Y E ++ Sbjct: 950 VSLFEVAGEENRHLPELVRE-PVWSEKKRLQEEKTALGLCLTGHMFDAYRDETSHFIR-- 1006 Query: 981 RLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQ 1040 + + GK AG++ +AR++ +RG R+ I T+DD + LEV L+++ + + Sbjct: 1007 --QPLSKVTEGKDQLIAGIITSARMLTGQRG-RMMIATIDDGTAALEVTLYSEVYEPNRS 1063 Query: 1041 LLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNR 1100 L++D +L+ V+ D FSGG+++ + VMDI AR ++A + + + + L ++ Sbjct: 1064 WLKEDELLVAKVNVTPDKFSGGMRIVSEAVMDITGARMRFAHNVHVCIDNVIDIKMLRSQ 1123 Query: 1101 LRQSLEPHR-------------SGTIP------VHLYYQRADARARLRFGATWRVSPSDR 1141 + L +R G+ + + ++F R+ P D Sbjct: 1124 INPYLMANRVRDLKLGASAPAAPGSNDGMKGLMLTAAVTTSGGACLMQFPEELRIYPDDA 1183 Query: 1142 LLNDLRGLIGSEQ---VELEF 1159 L+ L ++ S+Q V++++ Sbjct: 1184 CLHGLNQILASKQKDPVQVQY 1204 >UniRef50_D0WG97 DNA polymerase III, alpha subunit n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WG97_9ACTN Length = 1194 Score = 1180 bits (3052), Expect = 0.0, Method: Composition-based stats. Identities = 430/1179 (36%), Positives = 650/1179 (55%), Gaps = 50/1179 (4%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG----- 59 FVHL H++YSM+DG +V++AA L MPA+AITD +CG+ + A Sbjct: 24 PFVHLHNHTEYSMLDGATHVKDMVRRAADLDMPAVAITDHGVMCGVPELCDACAAVERET 83 Query: 60 -AGIKPIVGADFNVQ-----CDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 +KPI G + L H+ +LA N+ GY NL L+S+++ Y Sbjct: 84 GKKVKPIYGCEIYFTEDPEVGTKKRSPLYHMIMLAKNSEGYHNLLHLVSESHMDNY-YYK 142 Query: 114 PIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIR 172 P D + + +G++ S G + R L + A E +++ F P +++EL Sbjct: 143 PRTTLDMIKKHAKGIVATSACIAGIIPRRLRERDVAGAREWAQTFKDIFEPGDFYIELQD 202 Query: 173 TGRPDEE-----SYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDD 227 G EE LA GL +ATND ++ D A +I + I G DD Sbjct: 203 QGISTEEGFSQHELNVQLSNLAHDLGLETIATNDFHYLTREDAKAQDIMLCIGTGSNYDD 262 Query: 228 PKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMS 287 R R + + YM++EEEM E D PEA NTV++A++C+V + + LP+FP + Sbjct: 263 ENRMRFANDEFYMKTEEEMREALRDFPEACDNTVKVAEKCSVELE-RDSILPRFPLPEGY 321 Query: 288 TEDYL-VKRAKEGLEERLAFL--FPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIV 344 TE+ L + ++GL R +E RP+ ER E E VI Q GFP YFLIV Sbjct: 322 TEEMLFREECEKGLIHRYGNNGEITTMDELRAARPDVVERYEYEAGVIIQQGFPAYFLIV 381 Query: 345 MEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDV 404 E+I+W+KDNG+ VGPGRGS AG++ YA+ ITDL+PL+ LLFERFL+PERV MPD DV Sbjct: 382 QEYIRWAKDNGIGVGPGRGSAAGAICTYAMGITDLEPLDNGLLFERFLSPERVEMPDIDV 441 Query: 405 DFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIP 464 DF + R VI+HV D YG D ++ +ITFG + AK +RD RVLGHPYG D+I K I Sbjct: 442 DFDDQHRQDVIDHVRDFYGADHIAGVITFGKLQAKNAVRDAARVLGHPYGVGDKICKTIG 501 Query: 465 PDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524 + G+TL A E L ++Y+ D + + +ID AR +EG R G HA +I + D Sbjct: 502 DELGITLDDALENNVDLKKMYDDDADTRDIIDAARSIEGNIRGEGVHACATIICRDPLVD 561 Query: 525 FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584 P+ D +G +TQ+D GL+K DFLGLRTL +++ A + + R P Sbjct: 562 HVPVKRDTKGGGMITQYDGHYTPELGLLKMDFLGLRTLGVLSRACKNVKARHGLEIRP-- 619 Query: 585 DIAAIPLDDKKSFDMLQ---RSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPG 641 IP++D ++F +++ R +FQ+E L RL P F D++A +AL RPG Sbjct: 620 --DEIPIEDAEAFRLMRGEMRWGMDGLFQVEGALYVSLFSRLPPRRFSDIVASIALNRPG 677 Query: 642 PLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYT 701 PL+SGMVD+++ +G EI Y D + L+P+LE TYG ++YQEQ+MQI+ +SG++ Sbjct: 678 PLESGMVDDYVKVANGTTEIHYYD-----DRLRPILEETYGTMVYQEQIMQISMAMSGFS 732 Query: 702 LGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHS 761 G AD LR+AMGKKK + M + ++ + EGA +NG + E+A +I++ EKFA Y FNKSHS Sbjct: 733 AGKADRLRKAMGKKKLDIMRQLQADWNEGAVENGYSLEIAKQIWEDAEKFAKYAFNKSHS 792 Query: 762 AAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLY 821 AAYAL+ +T +LKAHYP EFMAAV+++ M N ++++ + C G+ +LPPD+N+ Sbjct: 793 AAYALLVMRTAYLKAHYPYEFMAAVLSSYMGNADRLIKYISSCTHSGIPVLPPDVNTSNL 852 Query: 822 HFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEK 881 F ++G I +G+ ++G+GE ++II+ R G + L D R D K NR+ LE Sbjct: 853 EFTPLEEG-IRFGLAGVRGIGEAVAQSIIDEREANGPYSSLHDFVNRLDAKCYNRKTLEA 911 Query: 882 LIMSGAFDRLGPHRAALMNSLGD--ALKAADQHAKAEAIGQADMFGVLAEEPE---QIEQ 936 L+ SGAFD G R LM+ + D L++A + K GQ MF + A+ P+ + Sbjct: 912 LVKSGAFDSTGYTRKQLMHFIDDTPLLESAAKRQKDRDAGQVSMFDLFADVPDSGFDDDV 971 Query: 937 SYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERG-KVIT 995 W ++++L E+E L +Y++ HP+ Y + +E V L D+ + K Sbjct: 972 PAPDGIEWDKRMLLAYEKEILKIYVSDHPLRPYERSLES-VTKYHLGDLAEHKGDIKNAV 1030 Query: 996 AAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVS 1055 AGLV + V +T++G ++ L+D +G +E + F +++ +++D I+ + G+ Sbjct: 1031 FAGLVASVTVKMTRKGTKMANFDLEDTTGHMECVCF--KYSDFEEAIQEDAIVKIKGRFE 1088 Query: 1056 FDDFSGGLKMTAREVMDID-EAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIP 1114 + ++ A EV +D ++ + L ISL D + RL L + G P Sbjct: 1089 HSERGD--QILAFEVERLDVDSMRETPSNLQISLAAADFDQSVATRLYGILGDY-PGNDP 1145 Query: 1115 VHLYYQRADARARLRFGATWRVSPSDRLL-NDLRGLIGS 1152 V LY +++D R + R +V +D LL + + L G Sbjct: 1146 VVLYVEQSDGR-KFRAELPIKVDAADNLLYSGIMTLFGR 1183 >UniRef50_B9JDK3 DNA polymerase III alpha subunit protein n=54 Tax=cellular organisms RepID=B9JDK3_AGRRK Length = 1187 Score = 1178 bits (3049), Expect = 0.0, Method: Composition-based stats. Identities = 480/1177 (40%), Positives = 690/1177 (58%), Gaps = 51/1177 (4%) Query: 3 EPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGI 62 P FVHLRVHS YS+++G ++ KAA PA+A+TD NL ++F G+ Sbjct: 39 TPEFVHLRVHSAYSLLEGALPLKKILAKAAGDNQPAIAVTDTNNLFVALEFSQKAMDEGL 98 Query: 63 KPIVGADFNVQCDLLGD-----------ELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111 +PI+G ++ + + +L + + AA GY+ L L+S+AY G G Sbjct: 99 QPIIGCQVSIDMEDGVEGEKRGPQQALAKLPSIVLFAATERGYERLVDLVSRAYLGGEGN 158 Query: 112 AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170 I WL E+ EG+I L+G G V +L G++ + + F DR ++EL Sbjct: 159 QAVHITASWLEEIGTEGMIALTGSLGGPVDMALKEGHAPQALSRLLALKRLFGDRLYIEL 218 Query: 171 IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230 R G D + + LA LP+VATN+ F D+DAH+ +A+ + D R Sbjct: 219 QRHGTYD-RRHEQKMIALAYEHELPLVATNEAFFPTRDDYDAHDALMAVAHNAIVSDDTR 277 Query: 231 PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTED 290 R +P Y++S +M +LFA++PEAL NTVEIA+RC+ ++ + LP+F E+ Sbjct: 278 FRL-TPDHYLKSRADMAKLFANLPEALENTVEIARRCSFVLKTRKPILPRFTGAADDEEE 336 Query: 291 -------YLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLI 343 L +A EGL++RLA L +Y ERLE EL VI +M FPGYFLI Sbjct: 337 ADRAESAELRAQAIEGLDQRLASL---GMAPGYVEKDYRERLEFELSVIERMKFPGYFLI 393 Query: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 V +FI+W+K + +PVGPGRGSGAGSLVAYAL ITD+DPL F LLFERFLNPERVSMPDFD Sbjct: 394 VADFIKWAKRHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDFD 453 Query: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 +DFC ++R++VI +V YGR+ V+QIITFG++ A+A +RDVGRVL PYG VD+I KL+ Sbjct: 454 IDFCQDRREEVIRYVQAKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLV 513 Query: 464 PPDPG--MTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTK 521 P +P L +A + EP+L E + + V L+D+A+K+EG+ R+A HA G+VI Sbjct: 514 PNNPANPTPLHQAIKEEPRLQEEADKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRP 573 Query: 522 ITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGE 581 ++ P+Y D PVTQF+ VE AGLVKFDFLGL+TLT++ A++ + KR Sbjct: 574 LSKLVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKTAVDFVAKRG----- 628 Query: 582 PPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPG 641 +D+A+IPLDDKK++DML R ET VFQ+ES GM+ + ++PDC ED+IALVAL+RPG Sbjct: 629 ISIDLASIPLDDKKTYDMLSRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPG 688 Query: 642 PLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYT 701 P+++ + + RKHG EEI + H ++ +L+ T G+I+YQEQVMQ+AQVLSGY+ Sbjct: 689 PMEN--IPVYNARKHGEEEI-----ESIHPTIDYLLKETQGVIVYQEQVMQVAQVLSGYS 741 Query: 702 LGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHS 761 LG AD+LRRAMGKK EM +QR F +GA KNG++ + IFDL+ KFA YGFNKSH+ Sbjct: 742 LGEADLLRRAMGKKIKAEMDQQRERFVDGAVKNGVSKGQSDVIFDLLAKFANYGFNKSHA 801 Query: 762 AAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLY 821 AAYA+VSYQT ++KAHYP EF+AA MT DM NTEKV + R+G++++ P I + Sbjct: 802 AAYAIVSYQTAYMKAHYPVEFLAASMTLDMANTEKVNDFRQDAKRLGIEVIAPSIQTSFR 861 Query: 822 HFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEK 881 F ++ I Y + A+KGVGE ++ I+E R F + D C R D K++NRRVLE Sbjct: 862 RFETGEN-RIYYALAALKGVGESAVDHIVEVRGD-QPFAGIEDFCLRIDPKQINRRVLES 919 Query: 882 LIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASC 941 LI +GAFD RA L+ + + A + + GQ DMFG A PE+I S+ Sbjct: 920 LIAAGAFDCFEIDRAQLIGGIDRIMGYAQVAQENKRSGQHDMFGSAASGPEKI--SFPPF 977 Query: 942 QPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERG-KVITAAGLV 1000 PW L E + LG YLT HP++ Y +++ ++G AG V Sbjct: 978 TPWLASERLLREFQVLGFYLTAHPLDTYKSVLDKMRVQNFADFSAAVKQGASNGRLAGTV 1037 Query: 1001 VAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFS 1060 ++ + T+ GN++GI D SG+ E +LF++ L++Y+ +LE + +V+ D+ Sbjct: 1038 ISKQERKTRTGNKMGIFVFSDASGQFEAVLFSEVLNQYRDVLEVGKSFVVTA--QADERP 1095 Query: 1061 GGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ 1120 G+ + + ++E + + L + + D L + L G + + + Sbjct: 1096 EGISLRLQTAQSLEEKSLQMQKALRVYVR----DSGPLKAVAAHLNAKGDGLVSFIVIKE 1151 Query: 1121 RADARARLRFGATWRVSPSDRLLNDLRGLIGSEQVEL 1157 + +R++P + LR G VEL Sbjct: 1152 EGKREVEVVLAEKYRITP--EIAAALRTAPGVIDVEL 1186 >UniRef50_C7N8B2 DNA-directed DNA polymerase III PolC n=2 Tax=Coriobacteriaceae RepID=C7N8B2_SLAHD Length = 1166 Score = 1178 bits (3047), Expect = 0.0, Method: Composition-based stats. Identities = 417/1178 (35%), Positives = 649/1178 (55%), Gaps = 51/1178 (4%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG---- 61 FVHL H++YSM+DG K +V++AA LGMPA+AITD +CG+ + A Sbjct: 3 FVHLHNHTEYSMLDGATKIKAMVRRAADLGMPAVAITDHGVMCGVPELCDAVEAVKKETG 62 Query: 62 --IKPIVGADFNVQ-----CDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGP 114 +KPI G + L HL +LA NN GY NL ++S+++ + P Sbjct: 63 VYVKPIYGCEVYFTEDREIGTRKKSPLYHLILLAKNNVGYHNLLHIVSESHMDNFFY-KP 121 Query: 115 IIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRT 173 D L + +EG+I + G V R L N A + + F P +++EL Sbjct: 122 RTTIDVLEKYSEGIIGTTACMSGIVQRRLDDRNYADALAWTKRFADIFAPGDFYVELQDQ 181 Query: 174 GRPD-----EESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228 G ++ ++A+ GL +ATND ++ D A +I + I G DD Sbjct: 182 GLTSRGGLTQKEINTQLTQIAQELGLKTIATNDFHYLTREDAAAQDIMLCIGTGSLRDDE 241 Query: 229 KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMST 288 R R + + YM++EEEM E D PEA NT+E+A++C V + + LP+FP T Sbjct: 242 NRMRFSNDEFYMKTEEEMREALKDFPEACDNTIEVAEKCFVELE-RDSVLPRFPLPPGYT 300 Query: 289 EDYL-VKRAKEGLEERLAFLFPD-EEERLKRRPEYDERLETELQVINQMGFPGYFLIVME 346 E+ L + ++GLE R + + + ER E E VI Q GFP YFLIV E Sbjct: 301 EEQLFREECEKGLERRYGPDWREIKISDGMHDVSVLERYEYEASVIVQQGFPAYFLIVQE 360 Query: 347 FIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 406 +I+W+K++G+ VGPGRGS AG++ YA+ ITDL+PL LLFERFL+PERV MPD DVDF Sbjct: 361 YIRWAKEHGIGVGPGRGSAAGAICTYAMGITDLEPLSNGLLFERFLSPERVEMPDIDVDF 420 Query: 407 CMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPD 466 E+R +VI+HV + YG D ++ +ITFG + AK +RD RVLGHPY DR+ K+I + Sbjct: 421 EDERRQEVIDHVREFYGADHIAGVITFGKLQAKNAVRDAARVLGHPYNTGDRLCKVIGDE 480 Query: 467 PGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 G+ L A E P L +IY+ + E + ++D A +EG R G HA +I + D Sbjct: 481 LGIKLKDAIENNPDLAKIYKEEPESREILDSAMSIEGNIRGEGVHACATIICRDPLVDHV 540 Query: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586 P+ D +G +TQ+D GL+K DFLGLRTL +++ A + R P Sbjct: 541 PVKRDTKGGGMITQYDGHYTPELGLLKMDFLGLRTLGVLSRACRNVKDRFGITIVP---- 596 Query: 587 AAIPLDDKKSFDMLQRSET----TAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 IP+DD+ ++ ++ R ET +FQ+ES L R++P F D++A +AL RPGP Sbjct: 597 DEIPIDDEGAYKLM-RLETPYSMDGLFQVESALYVSLFARMKPRTFSDIVASIALNRPGP 655 Query: 643 LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 L++G VD ++DR+ GR+ +SY D + LKP+LE TYG I+YQEQ+MQI+ +SG++ Sbjct: 656 LENGFVDLYVDRRMGRKPVSYYD-----DRLKPLLEETYGTIVYQEQIMQISMAMSGFSA 710 Query: 703 GGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSA 762 G AD LR+AMGKK+ E M + + + GA +NG + E+A +I+ E+FA Y FNKSHSA Sbjct: 711 GKADKLRKAMGKKRIEVMMQLKDDWCNGAVENGFSLEIAERIWHDAEEFAKYAFNKSHSA 770 Query: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 AYA++ +T ++KAHYP E+MAAV+++ M + +K++ + C R G+ +LPPDINS Sbjct: 771 AYAVLVCRTAYMKAHYPYEYMAAVLSSYMGSADKLIKYISSCTRNGIPVLPPDINSSNLE 830 Query: 823 FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKL 882 F ++G I +G+ ++GVG E+II R++GG F L D R D K NR+ LE L Sbjct: 831 FTPLEEG-IRFGLAGVRGVGAAVAESIIAERDEGGPFTSLHDFVNRVDGKCYNRKTLEAL 889 Query: 883 IMSGAFDRLGPHRAALMNSLGD--ALKAADQHAKAEAIGQADMFGVLAEEPE---QIEQS 937 + +GAFD G R LM + + L+ + + GQ MF + + + + + Sbjct: 890 VKAGAFDSTGYTRKQLMYFIDETSLLEDVAKRQRDRENGQVSMFDLFGDMEDSGFEEDIP 949 Query: 938 YASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERG-KVITA 996 W ++ +L E+ L +Y++ HP++QY + + R + +L D+ + K Sbjct: 950 APDGVEWDKRTLLAFEKSILKIYVSDHPLSQYERSL-RSISKFQLGDLADHKGDIKNGVF 1008 Query: 997 AGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSF 1056 GL+ ++ +TK+G ++ ++D +G ++ + F D+++ +E+D I+ V G+ Sbjct: 1009 CGLISTVQIKMTKKGKKMATFVMEDTTGFVDCVCF--KYDEFKDAIEEDAIVKVKGKFEH 1066 Query: 1057 DDFSGGLKMTAREVMDID-EAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPV 1115 + ++ A EV +D ++ ++ L I L ++ +L L + G PV Sbjct: 1067 SERGD--QLMAFEVERLDVDSMKQGPSSLQIMLQSSDLNSMTSAQLNNVLANY-PGRDPV 1123 Query: 1116 HLYYQRADARARLRFGATWRVSPSDRLL-NDLRGLIGS 1152 L Q++D R + R V ++ L+ +++ + G Sbjct: 1124 VLLVQQSDGR-KFRAELPVTVDAANNLMYSEIMSVFGR 1160 >UniRef50_C5EYF1 DNA polymerase III alpha subunit n=3 Tax=Helicobacter RepID=C5EYF1_9HELI Length = 1172 Score = 1177 bits (3046), Expect = 0.0, Method: Composition-based stats. Identities = 442/1180 (37%), Positives = 678/1180 (57%), Gaps = 61/1180 (5%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 F HL +H++YS++DGL K L K+ LGM ++AITD N+ G ++FY A GIKP Sbjct: 15 PFTHLHLHTEYSLLDGLNKIKILAKRIKELGMDSVAITDHGNMFGAIEFYKAMKEQGIKP 74 Query: 65 IVGADFNVQC----DLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 I+G + + ++ HL + A N GY+NL L S+A GY P I + Sbjct: 75 ILGMEAYLHNAEEISDKSNQRFHLCLYAKNLQGYKNLMYLSSQACLYGY-YMKPRISKKM 133 Query: 121 LIELNEGLILLSGGRMGDVGRSLL--------RGNSALVDECVAFYEEHFPDRYFLELIR 172 L E +EGLI S G+V L R E Y+E F D ++LEL+R Sbjct: 134 LREHSEGLICSSACLNGEVQWHLNLKKEDNKGRKGYERAKEVALEYKEIFGDDFYLELMR 193 Query: 173 TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 G +++ ++++ G+ ++ATND + + D A E+ I G +DP R R Sbjct: 194 HGIEEQQLIDKQIIQISLETGIKIIATNDTHYTNQGDSTAQEVAFCIGFGKDFNDPNRMR 253 Query: 233 NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFP---------- 282 + + Y++S E+M +L+ D+PEA+ANT EIA +CN+ + LG+ P F Sbjct: 254 HTVQEFYIKSPEQMAKLYMDLPEAIANTKEIADKCNLELHLGDPTPPSFKFTAEYAKAEN 313 Query: 283 TGDMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFL 342 +Y + +EGL++RL + R EY ERLE E+++IN+M FPGY L Sbjct: 314 LDFTQDSEYFAYKCREGLKKRLENV------ESSRHQEYKERLEKEIEIINKMKFPGYML 367 Query: 343 IVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDF 402 IV +F++ +K+ G+PVGPGRGS AGSLVA+ L+IT++DP+++DLLFERFLNPERVSMPD Sbjct: 368 IVWDFVRAAKERGIPVGPGRGSAAGSLVAFCLEITNIDPMKYDLLFERFLNPERVSMPDI 427 Query: 403 DVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL 462 D+DFC +R++++E+V D YGR V+Q+ITFG M AKAVIRDV RV+G PYG D +KL Sbjct: 428 DMDFCQSRREEILEYVTDKYGRHNVAQVITFGMMKAKAVIRDVARVMGMPYGEADAFAKL 487 Query: 463 IPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVI-APTK 521 IP + +TL KAFE EP++ E+ + D K + D A LE RN G HA VVI + + Sbjct: 488 IPKELDITLEKAFEKEPKIKELIDKDPLAKKIWDFAVVLENTKRNPGTHAAAVVIDSEHE 547 Query: 522 ITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGE 581 + APLY TQ+ +E L+KFDFLGL+TLT+++ AL++I R Sbjct: 548 LWHKAPLYRSTRDGIIATQYSMKYLEDVDLIKFDFLGLKTLTLVDDALKLIKNRH----N 603 Query: 582 PPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPG 641 +D + ++DKK ++ LQ T +FQ+ES + + KRL+P FED+IA++AL RPG Sbjct: 604 LEIDFLKLDVNDKKVYETLQSGNTLGIFQIESSMFQGINKRLRPSTFEDIIAIIALGRPG 663 Query: 642 PLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYT 701 P++SGMV +FIDRKHG+ I Y L+ +L PTYG I+YQEQVMQI Q + G++ Sbjct: 664 PMESGMVSDFIDRKHGKAPIVY-----MFPELESILRPTYGTIVYQEQVMQIVQKIGGFS 718 Query: 702 LGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHS 761 LG AD++RRAMGKK + MA ++ FA+GAEK G N A ++++L+ KFAGYGFNKSHS Sbjct: 719 LGEADLIRRAMGKKDAQIMADNKNKFAQGAEKQGFNRAKAEELWELIVKFAGYGFNKSHS 778 Query: 762 AAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLY 821 AAYA+++++T +LK +YP EFMAA++T++ ++T+K+V ++E +M +K+LPP+I Sbjct: 779 AAYAMITFETAYLKTYYPKEFMAALLTSEKNSTDKIVEYIEEANKMDIKVLPPNIQKSEL 838 Query: 822 HFHV---NDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRV 878 F V +D+ I++G+GAIKG GE I I+E R G F++L D +R D +K+N++ Sbjct: 839 EFSVARIDDEDCILFGLGAIKGAGEVAINIILEERKNNGDFKDLEDFLSRIDPQKVNKKS 898 Query: 879 LEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSY 938 LE I SGA D G R L+ + + A A+ + +FG +EE I Sbjct: 899 LEAFIKSGAMDCFGYTRRTLLEQVELLTENAKTAQIAKKEAENSLFG-DSEEFTAIALEL 957 Query: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998 + + + ++ +L+ E+E+LG Y +GHP+ Y KEI + + + I G Sbjct: 958 ENKEEYSKKEILEFEKESLGFYASGHPLEDY-KEIIKSINCAYTNQIQDIAENSSILLVG 1016 Query: 999 LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDD 1058 + +K G R GI L D G +E+ +F L + + DR + ++ + + Sbjct: 1017 SIEDVITKFSKSGKRYGILKLQDFYGSVELTIFEKTLLALEGM---DREIPIAVKCFVQE 1073 Query: 1059 FSGGLKMTAREVMDIDEAREKYARGLA---------ISLTDRQIDDQLLNRLRQSLEPHR 1109 + + A +++ ++EA+++ + L +++++++ +R++ H Sbjct: 1074 QNDTKSLRAEKILTLEEAQKEKVEFTMQKADTSEPLVLLLSVGLNERVISSIREAAMRHH 1133 Query: 1110 SGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGL 1149 L L +++ V ++ +L+ L Sbjct: 1134 GKR---ELRILFKTQTQELEMVSSFFV--HSQIKEELKEL 1168 >UniRef50_B1ZMU7 DNA polymerase III, alpha subunit n=3 Tax=Opitutaceae RepID=B1ZMU7_OPITP Length = 1271 Score = 1175 bits (3041), Expect = 0.0, Method: Composition-based stats. Identities = 444/1251 (35%), Positives = 641/1251 (51%), Gaps = 133/1251 (10%) Query: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61 ++P FVHL VHSDYS++DG + L+K+ LGM A+A+TD NL G ++FY A A Sbjct: 4 ADPNFVHLHVHSDYSLLDGSCRIDRLLKRTNELGMKAIALTDHGNLYGAIEFYKAAKDAQ 63 Query: 62 IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111 +KP++G + + + D G + HL +LA N TGYQNL L+S A+ +G+ Sbjct: 64 VKPLIGCELYLVEHSRLEKHGRSDDDGKTIFHLGLLARNLTGYQNLLKLVSDAHLKGF-Y 122 Query: 112 AGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLEL 170 P D + L + GLI SG V + LL + A + E F + YF+EL Sbjct: 123 YKPRTDIETLAKYAGGLIGFSGCLASLVPQHLLNDREDEARKACARFVEIFGRENYFIEL 182 Query: 171 IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230 G P++ + ++LA+ L V+ +NDV +++ D H+ + I G +DD KR Sbjct: 183 QDHGIPEQRKIIPGLLDLAQEFKLQVICSNDVHYVNHGDAGPHDAMLCIQTGSKIDDEKR 242 Query: 231 PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE--YFLPQFPTGDMST 288 R Q Y++S EEM ++F ++P +L NT +A C + + + P++P Sbjct: 243 MRFSGSQFYLKSREEMAQVFREVPASLTNTQLVADMCELAIPFPKGSERYPKYPLPPEIK 302 Query: 289 ED---YLVKRAKEGLEERLAFLF--------------------------PDEEERLKRRP 319 D YL GL R + P + L Sbjct: 303 TDRGGYLQDLCVAGLRRRYGVDYFAAASHPAAAERLDKLTNLPAGEKPQPPDYTGLTHEE 362 Query: 320 EYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDL 379 E R+ EL +I GF YFL+V +FI W+K +GVPVGPGRGSGAG LVAY L IT+L Sbjct: 363 ELVVRMGYELSIIRVTGFIDYFLVVWDFIAWAKSHGVPVGPGRGSGAGCLVAYLLGITNL 422 Query: 380 DPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAK 439 DPL F LLFERFLNPERVS PDFD+DFCM +R++VI +V + YG+D V+ IIT+GT+ AK Sbjct: 423 DPLRFKLLFERFLNPERVSPPDFDIDFCMRRREEVINYVREKYGKDCVANIITYGTLGAK 482 Query: 440 AVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMAR 499 VIRDV RV P+ DR++K+IP + +TL A +L + K ++D A Sbjct: 483 MVIRDVSRVHNLPFAEADRLAKMIPDELNITLTDAIAKSAELSSEIARNPVAKKIVDQAL 542 Query: 500 KLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGL 559 LEG+ RN GKHA G++I + DF PL E QFD V GL+K DFLGL Sbjct: 543 VLEGMVRNTGKHAAGIIITDQPLDDFVPLTLQE--GDVTVQFDMGAVTKLGLLKMDFLGL 600 Query: 560 RTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDL 619 +TLT+I A++ + + +P DI IPLDD K++ ML +T VFQLES GM+ Sbjct: 601 KTLTVIADAVDNVR----RTADPKFDIETIPLDDPKTYAMLNAGKTVGVFQLESSGMQSA 656 Query: 620 IKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEP 679 K++ +D+ A+ AL+RPGP+Q + ++ K + YP H L+ L+ Sbjct: 657 CKQVGVSNIDDINAICALYRPGPMQ--FIPDYARGKKDPSTVEYP-----HPLLEQSLQE 709 Query: 680 TYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEK-NGINA 738 TYGII+YQEQVM+ A++++GYTLGGADMLRRAMGKK E MAK+R F EGA++ N I+ Sbjct: 710 TYGIIVYQEQVMECAKIIAGYTLGGADMLRRAMGKKDAEAMAKERVKFVEGAKRVNAIDE 769 Query: 739 ELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVV 798 + A +IFDL+ KFA YGFNKSHSAAYALVSYQT +LKA+YP +FMAAV+TA++ N EKV Sbjct: 770 KKANEIFDLLNKFASYGFNKSHSAAYALVSYQTAFLKANYPVQFMAAVLTAELGNAEKVS 829 Query: 799 GLVDECWRMGLKILPPDINSGLYHFHVN-------------------------------- 826 + E MG+ +L PDIN F Sbjct: 830 HFIAEAEAMGITVLGPDINESREMFTPVLRGASSPRAQSPESRVQSQADSELSALNSQLS 889 Query: 827 ------DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLE 880 G I +G+ IKGVGE + IIE R+K G F + D AR D + +N+RVLE Sbjct: 890 AAEADRAGGAIRFGLAGIKGVGELAAQKIIEERDKNGAFCDFDDFAARMDGRAVNKRVLE 949 Query: 881 KLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEE---------- 930 L+ +GAFD G R L + + AL A+ A GQ + AE+ Sbjct: 950 HLVKTGAFDYSGAPRKPLFDGIDAALATVAARARDRAAGQHSFLDMFAEDLAPKKNGKNG 1009 Query: 931 -------------------PEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLK 971 Q S + L E+E LG Y++GHP+N + Sbjct: 1010 SNGHGAATPSSRPASGSDFSTLDSQLSTSSDDFTSTERLTFEKELLGFYVSGHPLNVFAG 1069 Query: 972 EIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKR-GNRIGICTLDDRSGRLEVML 1030 + + + ++ G+V ++K+ TL ++G L + + Sbjct: 1070 -LTEAIDTYPITELLNQGDRTEFRLCGIVSGIAKRLSKKDNRPWASFTLATKAGALPLNM 1128 Query: 1031 FTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTD 1090 F D Y +L ++ +++V G + + G ++ +E ++ R + L Sbjct: 1129 FADGYANYGTVLAENALVLVQGNIIVNQ--EGARVNVKECYPLENQIAGLVRKVTWLLRP 1186 Query: 1091 RQID-DQLLNRLRQSLEPHRSGTIPVHLYYQRADA---RARLRFGATWRVS 1137 + ++LR +L+ +SG + L + + A + TW+V+ Sbjct: 1187 AHPELAGFFHQLRATLDK-QSGDTRLELGFAFPNRFAPCAEISTALTWKVN 1236 >UniRef50_C6VZ84 DNA polymerase III, alpha subunit n=3 Tax=Sphingobacteriales RepID=C6VZ84_DYAFD Length = 1216 Score = 1172 bits (3032), Expect = 0.0, Method: Composition-based stats. Identities = 426/1231 (34%), Positives = 664/1231 (53%), Gaps = 106/1231 (8%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 +F HL H+ +S++DG A L KKA MPA+AITD N+ G+ +F G+ GIKP Sbjct: 2 QFSHLHCHTQFSLLDGAADIKKLFKKAKEDNMPAVAITDHGNMFGVFEFVAEGNKQGIKP 61 Query: 65 IVGADFNVQCDL--------LGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPII 116 IVG +F V D D H +LA + GY+NL + S + G P I Sbjct: 62 IVGCEFYVVEDRHVRQFTKDKKDVRHHQLLLAKDEIGYKNLVKMCSLGFIEGMYGKYPRI 121 Query: 117 DRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRP 176 D+D +++ ++GLI + + ++++R + ++ + F D +++EL R Sbjct: 122 DKDLIVQYHKGLIATTCCIGAIIPKTIIRQGEEAAEREFKWWLDLFGDDFYVELQRHDIR 181 Query: 177 DEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDG--------FTLDDP 228 D+ ++ A + ++ +ND ++D D++AH+I + I+ G DD Sbjct: 182 DQYIVNEVLIKFARKYNVKIICSNDSHYVDRDDWNAHDILLCINTGDKQSTPSAKDFDDE 241 Query: 229 K------RPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFP 282 K R Y+ Q Y + EM +LF D+PE+L NT EI + + LP FP Sbjct: 242 KGIPKGSRFAFYNDQFYFKKTSEMLQLFNDLPESLDNTNEIVDKIKTLDLRKDILLPNFP 301 Query: 283 TGDMSTE--------------------DYLVKRAKEGLEERLAFLFPDEEERLKRRPEYD 322 D +YL EG ++ + P E + Sbjct: 302 IPDEFKTHTLSEMVGKKELTADVLNQWEYLRHLTFEGARKKYDVVTP----------EIE 351 Query: 323 ERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPL 382 ERL ELQ I MGFPGYFLIV +FI + GV +GPGRGS AGS VAYA+ IT++DP+ Sbjct: 352 ERLNFELQTIRNMGFPGYFLIVADFIDAGRKMGVFIGPGRGSAAGSAVAYAIGITNIDPV 411 Query: 383 EFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVI 442 ++DLLFERFLNP+R+SMPD D DF + R +VI++V YG + V+QI+T+GTMAAK+ I Sbjct: 412 KYDLLFERFLNPDRISMPDIDTDFDDDGRQKVIDYVVKKYGYNQVAQIVTYGTMAAKSAI 471 Query: 443 RDVGRVLGHPYGFVDRISKLIPPDP--GMTLAKAF---------------------EAEP 479 +DV RV+ P + ++KL+P P MTL + F E Sbjct: 472 KDVARVMDLPLPDANMLAKLVPDKPTYNMTLNRIFTAPLEGEGSLMKKEGISPDELENVK 531 Query: 480 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 539 ++ I ++ +++ AR+LEG RN G HA G++IAP+ +T+ P+ ++ +T Sbjct: 532 RMRAIAVGNDLQASVLQEARRLEGTVRNTGIHAAGIIIAPSDLTEIIPVSTSKDSDFLIT 591 Query: 540 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 599 Q+ +E AG++K DFLGLR L+II AL MI + + I +PLDD K F++ Sbjct: 592 QYQGKIIEDAGVIKMDFLGLRNLSIIKEALRMIKNNYGHD----IVIDDVPLDDPKVFEL 647 Query: 600 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 659 QR ET A+FQ ES GMK ++ L PD FE +IA+ AL+RPGP+ + NFI RK+G+E Sbjct: 648 FQRGETNAIFQFESDGMKKYMRDLIPDRFEHLIAMNALYRPGPIA--YIPNFIRRKNGQE 705 Query: 660 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 719 E++Y L+ L TYGI +YQEQVM ++Q L+G+T G AD LR+AMGKK+ E Sbjct: 706 EVTYDL-----PELEEYLADTYGITVYQEQVMLLSQKLAGFTKGQADTLRKAMGKKQIET 760 Query: 720 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 779 + K + F +G + G++A+ KI+ E FA Y FNKSHS YA V+YQT +LKAHYP Sbjct: 761 LNKLKGDFMKGGTEKGLDAKKLEKIWTDWEAFASYAFNKSHSTCYAFVAYQTAYLKAHYP 820 Query: 780 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 839 AE+MAAV+T+ + + +K+ ++EC + L +L PDIN F VN GEI +G+ +K Sbjct: 821 AEYMAAVLTSSLGSIDKITFFMEECKNLSLPVLGPDINESERQFSVNKKGEIRFGLAGVK 880 Query: 840 GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRL-GPHRAAL 898 G G+ +E+IIE R KGG F+++FD R + + +N++ LE L +GAFD HRA Sbjct: 881 GSGDAAVESIIEERAKGGPFKDVFDFMTRVNLRTVNKKTLESLAYAGAFDCFTDYHRAQY 940 Query: 899 MNS--------LGDALKAADQHAKAEAIGQADMFGVLAEEPEQI-EQSYASCQPWPEQVV 949 + + ++ A+ + ++ QA +FG+L + + + A PW + Sbjct: 941 FTAEQGENGTFIEKLIRYANNYHAEKSSAQASLFGMLGDSGSTLAKPKAADIGPWDDLAK 1000 Query: 950 LDGERETLGLYLTGHPINQYLKEIERYVGGV--RLKDMHPTER-----GKVITAAGLVVA 1002 L E+E +G Y++GHP++ + E++ + ++ +++ ER GK I AG+V + Sbjct: 1001 LRYEQEVVGFYISGHPLDTFRAELDNFCNCTLDKVMEINEGERAPKYYGKDINVAGIVTS 1060 Query: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFD-DFSG 1061 A+ ++K G+ I ++D G +E+++ + +++ L+ + L + G+V Sbjct: 1061 AQERMSKNGSLFMIFKIEDYQGAMEMLIGGEDYIRFKNYLQVGQFLYIKGKVQNRWKQED 1120 Query: 1062 GLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQR 1121 + ++ + E EK R + I+LT QID Q ++ L ++ + G V + + Sbjct: 1121 QFEFKISQIQLLPEIMEKMCRKIKINLTLDQIDAQFIHVLNETFGSYPGG-CQVSMTVKD 1179 Query: 1122 ADARARLR-FGATWRVSPSDRLLNDLRGLIG 1151 + + +RV+PS+ L LRG G Sbjct: 1180 PETHLEVEMLSRGYRVAPSNELFKVLRGFHG 1210 >UniRef50_B0MXW1 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MXW1_9BACT Length = 1287 Score = 1171 bits (3030), Expect = 0.0, Method: Composition-based stats. Identities = 433/1234 (35%), Positives = 661/1234 (53%), Gaps = 113/1234 (9%) Query: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 P FVHL VH+ YS++DG A +PL+K+A ALGM ALAITD N+ G+ F+ AGIK Sbjct: 70 PDFVHLHVHTQYSILDGAAAISPLIKRAKALGMKALAITDHGNMYGVKNFHDVATDAGIK 129 Query: 64 PIVGADFNVQCDLLGDE-----LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDR 118 PI+G + V + + HL +LA N TGY NL ++S ++ G+ P ID+ Sbjct: 130 PILGCETYVVRNRFEKDKDEKAGDHLILLAKNLTGYHNLCKIVSYSFTEGF-YYKPRIDK 188 Query: 119 DWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDE 178 L + +EGLI S G+V ++++R + ++ V +++ F D Y+LEL D Sbjct: 189 KLLEQYHEGLICCSACLGGEVPQAIMRNDMEEAEQVVRWFKSIFGDDYYLELQLHPSGDP 248 Query: 179 ES----------YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228 A +EL+ G+ + +NDV FI + D AH+ + ++ G LDDP Sbjct: 249 RKDADVYENQLLVNKALLELSAKCGVKYICSNDVHFILAEDAVAHDHLICLNTGRDLDDP 308 Query: 229 KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRC------NVTVRLGEYFLPQFP 282 R R Y+ Q+Y++S EEM +LF D PEALA T+EIA + + + P+F Sbjct: 309 NRMR-YTFQEYLKSPEEMAQLFPDHPEALATTLEIADKVEEYKLTHAPLMPNFPPPPEFH 367 Query: 283 TGDMSTED---------------------------------------------YLVKRAK 297 + YL Sbjct: 368 MPFEELRESLVKKIEDQEELARIDACHSVEELDAWAEESKERSEKLMTAKQFCYLKDLTY 427 Query: 298 EGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVP 357 +G R + E ++R+ EL I MGFPGYFLIV ++I+ +++ GV Sbjct: 428 KGAHLRYGAELSE---------EVEKRIRYELSTIEWMGFPGYFLIVWDYIRAAREMGVS 478 Query: 358 VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEH 417 VGPGRGS AGS+VAY LKIT++DPL++DLLFERFLNPER+S+PD DVDF + RD V+ + Sbjct: 479 VGPGRGSAAGSVVAYCLKITNIDPLKYDLLFERFLNPERISLPDVDVDFDEDGRDDVLHY 538 Query: 418 VADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMT------- 470 YG+ V+QI+TFGTMA K IRDV RV DR++KL+P Sbjct: 539 CVHKYGQKRVAQIVTFGTMAPKLAIRDVARVQKLALSESDRLAKLVPDKVTPDKKAGETP 598 Query: 471 LAKAFEAEPQLPEIYEA-DEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLY 529 ++ P+L E+ ++ ++ + A KLEG R G HA GV+I + +FAP+ Sbjct: 599 FDFCYKESPELAAERESPNQLIRNTLKYAEKLEGSIRQTGVHACGVIIGQDDLENFAPMA 658 Query: 530 CDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAI 589 ++ V +F+ +VE GL+K DFLGLRTL+II A+ + + +DI I Sbjct: 659 IAKDADLNVVEFEGKEVESVGLIKMDFLGLRTLSIIKDAVTNVKNVHGID----VDIDNI 714 Query: 590 PLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVD 649 PLDD ++++ R +TT +FQ ES GMK ++ L+P+ FED+IA+ AL+RPGP++ + Sbjct: 715 PLDDAPTYEVFSRGDTTGLFQFESPGMKKHLRNLKPNRFEDLIAMNALYRPGPME--YIP 772 Query: 650 NFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLR 709 NFI RKHG E ++Y ++ L TYGI +YQEQVM ++Q L+G+T G AD LR Sbjct: 773 NFIARKHGLEPVTYDIA-----DMEEYLSDTYGITVYQEQVMLLSQKLAGFTGGEADTLR 827 Query: 710 RAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSY 769 +AMGKK+ + K + F EG K G +A++ KI+ E FA Y FNKSHS YA ++Y Sbjct: 828 KAMGKKQRAVLDKMKPKFIEGCSKRGHDAKICEKIWGDWEAFASYAFNKSHSTCYAYIAY 887 Query: 770 QTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDG 829 QT +LKAHYP+EFMAA+++ ++ + +++ ++EC RMG+++L PDIN L +F N G Sbjct: 888 QTGYLKAHYPSEFMAALLSRNLSDIKQITLYMNECKRMGIRVLGPDINESLNNFSSNKAG 947 Query: 830 EIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFD 889 ++ +G+ A+KGVGE +E+I+ RNK G F++++D R + +NR+ LE + +G FD Sbjct: 948 DVRFGLAAVKGVGEAAVESIVAERNKNGKFKDIYDFFERVNYTAVNRKCLENIAYAGGFD 1007 Query: 890 RL-GPHRAALMNS----------LGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSY 938 + G HR + + ++ + + Q +FG + Sbjct: 1008 SISGFHRCKFFGTDLRDSSSTTFIEQLVRYGQRFQSEKDNAQQSLFGGGEGVVDIQHPVI 1067 Query: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTE--RGKVITA 996 +CQ W L ERE +GLYL+ HP++ Y I R + +L D+ E RG+ I Sbjct: 1068 PACQDWSTLETLGKEREMIGLYLSAHPLDDY-AVIIRNMCKTQLSDLDNLESLRGQEIAV 1126 Query: 997 AGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSF 1056 AG+V+A + +VTK G G TL+D +G E LF+ + +++ L D L + G+V Sbjct: 1127 AGMVIATQNLVTKTGKPWGKFTLEDYNGTHEFALFSKDYENFRKYLFNDYFLFIRGKVQP 1186 Query: 1057 DDFSG-GLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTI-P 1114 ++ L+ ++ + E R+ + + I L I +++ L ++ T Sbjct: 1187 KPYNDKELEFKITSMVQLSEMRDTMIKEMYIQLAIEDITREMIEELTHRIKESEGSTTLR 1246 Query: 1115 VHLYYQRADARARLRFGATWRVSPSDRLLNDLRG 1148 V++Y + A + F +VS + L++ L Sbjct: 1247 VNVYDRDAQVSVNM-FSKRHKVSLTSNLVSFLED 1279 >UniRef50_C7M0P6 DNA polymerase III, alpha subunit n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M0P6_ACIFD Length = 1189 Score = 1170 bits (3028), Expect = 0.0, Method: Composition-based stats. Identities = 429/1214 (35%), Positives = 643/1214 (52%), Gaps = 91/1214 (7%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL H++YSM+DG ++ L++ AAA G PALAITD NL G ++FY A G++PI Sbjct: 4 FVHLHTHTEYSMLDGASRINDLLRAAAADGQPALAITDHGNLYGALEFYKAATRTGVRPI 63 Query: 66 VGADFNVQCDLLGDEL--------------------THLTVLAANNTGYQNLTLLISKAY 105 +G + + + HLT+LA N TGY NL L S+A+ Sbjct: 64 IGLEAYMAGGSRFERPQRRGRLDDTGGESERGEKLYYHLTLLAENETGYHNLIQLSSRAF 123 Query: 106 QRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PD 164 GY P ID + L E EGLI L+G G V + LLRG+ E PD Sbjct: 124 LEGY-YYKPRIDFELLEEHREGLIALTGCLGGLVLQHLLRGDEEGARTVAGTLREILGPD 182 Query: 165 RYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFT 224 F+EL G ++ +ELA+ GL VATND + D + H+ + + G T Sbjct: 183 NVFVELQDHGLAEQRRTNPQLLELAKHLGLRTVATNDSHYTHREDHETHDALLCVQTGAT 242 Query: 225 LDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTG 284 ++D R R + Y++S EEM E F ++PEA T++IA+RC++ + G+ LP+ Sbjct: 243 INDQNRFRFEGSEHYLKSAEEMRERFREVPEACDATLDIAERCSLELTFGQPALPEIDIP 302 Query: 285 --------DMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMG 336 D +YL + +G R + ER+ EL VI MG Sbjct: 303 VRITGATYDERAGEYLAELVWQGARARYGNDLDETTS---------ERIRYELSVIESMG 353 Query: 337 FPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPER 396 FPGYFL+V + I+ +++ + VGPGRGS AGS+VAY L IT +DPL +DL+FERFLNP R Sbjct: 354 FPGYFLVVWDLIRHAREAHIRVGPGRGSAAGSVVAYCLGITQIDPLAYDLIFERFLNPGR 413 Query: 397 VSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFV 456 MPD D+DF R ++I + A+ YG D V+QI+TF T+ A+A +RD RVLG+PY Sbjct: 414 KQMPDIDMDFDERYRGEMIRYAAERYGHDHVAQIVTFSTIKARAAVRDAARVLGYPYAVG 473 Query: 457 DRISKLIPP-------------DPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEG 503 D+I+K +PP + + L E+ E+D +V ++ +A+ LEG Sbjct: 474 DKIAKAMPPLVMGRDTPLAACLELTPGHEDGYAQAAALREMVESDPDVARVVQVAKGLEG 533 Query: 504 VTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKH------PVTQFDKSDVEYAGLVKFDFL 557 + R G HA VVI+ +T++ P+ + VTQF+ VE GL+K DFL Sbjct: 534 LRRQDGIHAAAVVISRDPLTEYLPIQRKPDPGQDPSEAPIVTQFEMHGVEELGLLKMDFL 593 Query: 558 GLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMK 617 GLRTL++I+ A+E+I R + LDI AI LDD+ +F ML+ + VFQLE M+ Sbjct: 594 GLRTLSVIDRAVELIRATRGVD----LDIDAIALDDEATFAMLRAGDAIGVFQLEGGPMR 649 Query: 618 DLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVL 677 L+++L P FED+ ALVAL+RPGP+ + M ++ DRK+GR+ +SY H L+PVL Sbjct: 650 QLMRQLAPSRFEDVAALVALYRPGPMAANMHVDYADRKNGRKPVSY-----LHPDLEPVL 704 Query: 678 EPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGIN 737 TYG+++YQE +M++AQ ++GY+L AD LR+A GKK +A +R F G +G Sbjct: 705 RDTYGLMIYQESMMRVAQQIAGYSLEEADNLRKACGKKIRTLIAAEREKFIAGCVASGYG 764 Query: 738 AELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKV 797 EL +FD++E FA Y FNKSH+ Y LVSYQT +LKA++P +F+AA++T+ D+ +K+ Sbjct: 765 PELGTALFDIIEPFADYAFNKSHAFGYGLVSYQTAYLKANFPVQFLAAILTSVRDDKDKL 824 Query: 798 VGLVDECWRMGLKILPPDINSGLYHFHVN---DDGEIVYGIGAIKGVGEGPIEAIIEARN 854 + + + +L PD+N+ F V + +I +G+ A++ VGEG + +II+ R Sbjct: 825 AVYLADAAAHHIAVLVPDVNASDVDFSVTSGPEGEQIRFGLAAVRNVGEGLVRSIIDERT 884 Query: 855 KGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAK 914 + G F D R D LNRR LE LI +GAFD G R AL +L AL+ ++ + Sbjct: 885 RSGPFTSFADFLLRVDASVLNRRTLESLIKAGAFDSFGHPRRALYEALEGALERVNERRR 944 Query: 915 AEAIGQADMFGVLAEEPEQIEQSYASCQ--PWPEQVVLDGERETLGLYLTGHPINQY-LK 971 G +F +E+ + W +L ER+ LGLY++ HP++ + Sbjct: 945 QRDRGLGSLFEEPSEDESVVPDLRLDIGSVEWSTPELLAFERDMLGLYVSAHPMHGVNVD 1004 Query: 972 EIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 + R V + T G+ +T G + A T++G+ + L+D +EVM+F Sbjct: 1005 RLGRDVTPILDLIEADTPPGEPVTVVGAITALAQRTTRKGDLMATLRLEDLQAGIEVMVF 1064 Query: 1032 TDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEA-------REKYARGL 1084 + + L++D I+ ++G++ D G + A + +D A + + Sbjct: 1065 PKTMADHGLHLKQDAIVAITGRI--DGREDGRTLVALAIEPVDTAALTSDDAADGATDAV 1122 Query: 1085 AISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRVSPSDRLL 1143 + L R L RLR L H GT L + +RF A+ V P L+ Sbjct: 1123 VLRLPKRLAVPDSLVRLRNVLADH-VGTARAVLDIEG------MRFELASTSVRPGSSLV 1175 Query: 1144 NDLRGLIGSEQVEL 1157 LR + G +QV + Sbjct: 1176 GHLRNVFG-DQVRV 1188 >UniRef50_P63978 DNA polymerase III subunit alpha n=117 Tax=root RepID=DPO3A_MYCBO Length = 1184 Score = 1169 bits (3025), Expect = 0.0, Method: Composition-based stats. Identities = 421/1188 (35%), Positives = 638/1188 (53%), Gaps = 59/1188 (4%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL H++YSM+DG AK P++ + LGMPA+ +TD N+ G +FY + AGIKPI Sbjct: 10 FVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAGIKPI 69 Query: 66 VGADFNVQCDLLGD--------------------ELTHLTVLAANNTGYQNLTLLISKAY 105 +G + + D THLT++A N TG +NL L S A Sbjct: 70 IGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLSSHAS 129 Query: 106 QRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEH-FPD 164 G + +D + + E EG+I+ +G G+V L G E A + E PD Sbjct: 130 FEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWREIVGPD 189 Query: 165 RYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFT 224 YFLEL+ G E +E+ A +P +ATND ++ HE + + G T Sbjct: 190 NYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLCVQTGKT 249 Query: 225 LDDPKRPRNYSPQQYMRSEEEMCELFAD-IPEALANTVEIAKRCNVTVRLGEYF--LPQF 281 L DP R + Y++S EM +++ D +P A +T+ IA+R + +P F Sbjct: 250 LSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWTPRDRMPVF 309 Query: 282 PTGDMSTE-DYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGY 340 P D + +L GL R PD Y ER E+ VI GFP Y Sbjct: 310 PVPDGHDQASWLRHEVDAGLRRRFPAGPPDG---------YRERAAYEIDVICSKGFPSY 360 Query: 341 FLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMP 400 FLIV + I +++ G+ VGPGRGS AGSLVAYAL ITD+DP+ LLFERFLNPER SMP Sbjct: 361 FLIVADLISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMP 420 Query: 401 DFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRV-LGHP-YGFVDR 458 D D+DF +R +++ + AD +G D V+Q+ITFGT+ KA ++D R+ G P + DR Sbjct: 421 DIDIDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADR 480 Query: 459 ISKLIPPDP--------GMT--LAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNA 508 I+K +PP G+T + ++ ++ + E D +V+ + AR LEG+ RNA Sbjct: 481 ITKALPPAIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNA 540 Query: 509 GKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWA 568 G HA V+++ +T+ PL+ + +T +D E GL+K DFLGLR LTII A Sbjct: 541 GVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDA 600 Query: 569 LEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCF 628 ++ + R + LD+ ++PLDDK ++++L R +T VFQL+ M+DL++R+QP F Sbjct: 601 IDNVRANRGID----LDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGF 656 Query: 629 EDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQE 688 ED++A++AL+RPGP+ +++ DRK+ R+ I P E L+ +L TYG+I+YQE Sbjct: 657 EDVVAVIALYRPGPMGMNAHNDYADRKNNRQAIK-PIHPELEEPLREILAETYGLIVYQE 715 Query: 689 QVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLV 748 Q+M+IAQ ++ Y+L AD+LR+AMGKKK E + K+ F++G + NG + ++D + Sbjct: 716 QIMRIAQKVASYSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTI 775 Query: 749 EKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMG 808 FA Y FNKSH+A Y +VSY T +LKA+YPAE+MA ++T+ D+ +K + +C ++G Sbjct: 776 LPFADYAFNKSHAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLG 835 Query: 809 LKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCAR 868 + +LPPD+N +F +I YG+GA++ VG + ++++ RN G F + D + Sbjct: 836 ITVLPPDVNESGLNFASVGQ-DIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNK 894 Query: 869 TDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLA 928 D N++V E LI +GAFD LG R L DA+ + KAEA+GQ D+FG Sbjct: 895 IDISACNKKVTESLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSND 954 Query: 929 EEPEQIEQSYA---SCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDM 985 + + + W ++ L ERE LGLY++GHP+N + V + Sbjct: 955 DGTGTADPVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAIL 1014 Query: 986 H-PTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEK 1044 + G++ + V K G L+D +G +EVM F Y + Sbjct: 1015 DGDVPNDAQVRVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTYSSYGADIVD 1074 Query: 1045 DRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQS 1104 D +++V+ +V+ D + + A ++ D + + R LA+SL RQ ++ L+Q Sbjct: 1075 DAVVLVNAKVAVRD--DRIALIANDLTVPDFSNAEVERPLAVSLPTRQCTFDKVSALKQV 1132 Query: 1105 LEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGS 1152 L H GT VHL D L + RV+PS L+ DL+ L+G Sbjct: 1133 LARH-PGTSQVHLRLISGDRITTLALDQSLRVTPSPALMGDLKELLGP 1179 >UniRef50_Q9Z618 DNA polymerase III subunit alpha n=43 Tax=Actinobacteridae RepID=DPO3A_STRCO Length = 1179 Score = 1169 bits (3024), Expect = 0.0, Method: Composition-based stats. Identities = 416/1192 (34%), Positives = 642/1192 (53%), Gaps = 58/1192 (4%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS+P F HL VH+ YS++DG A+ + +GM +A++D NL G F+ + A Sbjct: 1 MSKPPFTHLHVHTQYSLLDGAARLKDMFDACNEMGMSHIAMSDHGNLHGAYDFFHSAKKA 60 Query: 61 GIKPIVGADFNVQCDLLGDE--------------------LTHLTVLAANNTGYQNLTLL 100 G+ PI+G + V + ++ TH T+ A N+ G NL L Sbjct: 61 GVTPIIGIEAYVAPESRRNKRKIQWGQPHQKRDDVSGSGGYTHKTMWATNSKGLHNLFRL 120 Query: 101 ISKAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEE 160 S AY G+ P +D++ + + +EG++ +G G+V L G+ + A Y++ Sbjct: 121 SSDAYAEGWLQKWPRMDKETISQWSEGIVASTGCPSGEVQTRLRLGHFDEALKAAADYQD 180 Query: 161 HFP-DRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAI 219 F DRYFLEL+ G E +E+ G+P + TND + + + AH+ + I Sbjct: 181 IFGKDRYFLELMDHGIEIEHRVRDGLLEIGRKLGIPPLVTNDSHYTYAHEATAHDALLCI 240 Query: 220 HDGFTLDDPKRPRNYSPQQYMRSEEEMCELFA--DIPEALANTVEIAKRCNVTVRLGEY- 276 G L DP R R Y++S +EM + + E ANT IA+ + T + Sbjct: 241 QTGKNLSDPDRFRFDGTGYYLKSTDEMYAIDSSDAWQEGCANTRLIAEMIDTTGMFEKRD 300 Query: 277 FLPQFPTGDMSTE-DYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQM 335 +P+F + TE + + + G+E R P++ ++ E E+ VI QM Sbjct: 301 LMPKFDIPEGFTEITWFQEEVRRGMERRFPGGVPEDR---------QKQAEYEMDVIIQM 351 Query: 336 GFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPE 395 GFPGYFL+V +FI W+K+ G+ VGPGRGS AGS+VAYA+ ITDLDP+ L+FERFLNPE Sbjct: 352 GFPGYFLVVADFIMWAKNQGIAVGPGRGSAAGSIVAYAMGITDLDPIPHGLIFERFLNPE 411 Query: 396 RVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGF 455 RVSMPD D+DF +R +VI +V + YG D V+ I T+G + AK I+D RVLG+PY Sbjct: 412 RVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAM 471 Query: 456 VDRISKLIPPD---PGMTLAKA-------FEAEPQLPEIYEADEEVKALIDMARKLEGVT 505 DR++K +P D G+ L + ++ +YE++ +VK +ID A+ +EG+ Sbjct: 472 GDRLTKAMPADVLGKGIDLNGITDPTHPRYSEAGEIRSMYESEPDVKKVIDTAKGVEGLV 531 Query: 506 RNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTII 565 R G HA GV+++ I D AP++ +TQ+D E GL+K DFLGLR LTI+ Sbjct: 532 RQMGVHAAGVIMSSEPIVDHAPIWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNLTIM 591 Query: 566 NWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQP 625 + A++M+ + + + +F++LQR +T VFQ + M+ L++ ++P Sbjct: 592 DDAVKMVKSNKGIDLDLLSLPLDD----PTTFELLQRGDTLGVFQFDGGPMRSLLRLMKP 647 Query: 626 DCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIIL 685 D FED+ A+ AL+RPGP+ N+ RK+G +EI+ P + E L+ VL TYG+I+ Sbjct: 648 DNFEDISAVSALYRPGPMGMDSHTNYALRKNGLQEIT-PIHKELEEPLQEVLAVTYGLIV 706 Query: 686 YQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIF 745 YQEQV + AQ+++GY+LG AD+LRR MGKKKP+E+AK +F GA KNG + E ++ Sbjct: 707 YQEQVQKAAQIIAGYSLGEADILRRVMGKKKPDELAKNFVLFQAGARKNGYSDEAIQALW 766 Query: 746 DLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECW 805 D++ FAGY FNK+HSAAY LVSY T +LKA+YPAE+MAA++T+ D+ +K ++EC Sbjct: 767 DVLVPFAGYAFNKAHSAAYGLVSYWTGYLKANYPAEYMAALLTSVKDDKDKSAVYLNECR 826 Query: 806 RMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDL 865 RMG+K+LPP++N + +F D I++G+ A++ VG +E+II+ R G + D Sbjct: 827 RMGIKVLPPNVNESMSNFAAQGDDVILFGLSAVRNVGTNVVESIIKCRKAKGKYASFPDY 886 Query: 866 CARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFG 925 + + N+R E LI +GAFD +G R L + + EA GQ D+FG Sbjct: 887 LDKVEAVVCNKRTTESLIKAGAFDEMGHTRKGLTAQYEPMIDNVVAVKRKEAEGQFDLFG 946 Query: 926 VLAEEPEQIEQSYASC----QPWPEQVVLDGERETLGLYLTGHPINQYLKEI-ERYVGGV 980 + +E W + +L ERE LGLY++ HP+ + ++ G+ Sbjct: 947 GMGDEQSDEPGFGLDVVFGEDEWDKTYLLAQEREMLGLYVSDHPLFGLEHVLSDKADAGI 1006 Query: 981 RLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQ 1040 G V+T G++ + +TK+GN I T++D +G LE M F Sbjct: 1007 SQLTGGDFGDGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSLECMFFPATYQLVST 1066 Query: 1041 LLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNR 1100 L +D ++ V G++ D ++ A E+M D + + +++ +I +++R Sbjct: 1067 QLVEDAVVFVKGRL--DKREDVPRLVAMELMIPDLSNAGTNAPVVLTIPATRITPPMVSR 1124 Query: 1101 LRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGS 1152 L + L HR G V + Q LR RV P L DL+ L+G Sbjct: 1125 LGEILTHHR-GDSEVRIKLQGPTKTTVLRLDRH-RVKPDPALFGDLKVLLGP 1174 >UniRef50_C8WER6 DNA polymerase III, alpha subunit n=10 Tax=Alphaproteobacteria RepID=C8WER6_ZYMMN Length = 1174 Score = 1166 bits (3016), Expect = 0.0, Method: Composition-based stats. Identities = 469/1184 (39%), Positives = 671/1184 (56%), Gaps = 53/1184 (4%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M FV LR+ S ++M++G + + + A +G PA I D L G++ F +G Sbjct: 1 MPYTPFVPLRIFSGFTMLEGAIEPKDITQHAKKMGFPAAGICDRNGLYGVMTFSDSGKKD 60 Query: 61 GIKPIVGADFNVQCDLLGDELT-------HLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 G++PI+G+ V L G E + L + A + GY NL L+S A+ Sbjct: 61 GVQPIIGSLLAVARPLRGGEASGQELKIDWLPLYAQDEDGYNNLCALVSHAHLGRPLELP 120 Query: 114 PIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRT 173 P + ++L + ++GL+ L+GG+ G + R L + + + ++ FPDR ++EL R Sbjct: 121 PHVSMEFLEQHSQGLLALTGGKEGALARLLAEEQQSEAEAYLTLLQKIFPDRLYIELSRR 180 Query: 174 GRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRN 233 EE+ ++LA R +P+VATN V F+++ AH+ + I D +D P R R+ Sbjct: 181 SEEIEEAAEEGLIDLAYDRDIPLVATNPVCFLEADFHPAHDAMLCIADSAYVDSPDR-RH 239 Query: 234 YSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLV 293 SP+ +M+S EEM LF DIPEA+ N++ IA+RC V + + LP L Sbjct: 240 SSPEAWMKSGEEMARLFEDIPEAIQNSLVIAQRCAVAAPVRKPILPSLAGDREGETLMLR 299 Query: 294 KRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKD 353 K A GLE RLA + R Y+ERL+ EL +I MGFPGYFLIV +FI+W+K Sbjct: 300 KDAWAGLEARLAAM-----TTPVDRKAYEERLQYELNIIENMGFPGYFLIVADFIKWAKS 354 Query: 354 NGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQ 413 N +PVGPGRGSGAGS+VA+AL IT+LDPL LLFERFLNPERVSMPDFD+DFC +R + Sbjct: 355 NQIPVGPGRGSGAGSVVAWALTITNLDPLRLGLLFERFLNPERVSMPDFDIDFCETRRSE 414 Query: 414 VIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP--DPGMTL 471 VI +V YG D V+QIITFG M A+AV++D GRVL YG VDR++KL+P TL Sbjct: 415 VISYVQHKYGLDHVAQIITFGRMKARAVLKDTGRVLQMSYGQVDRLAKLVPSQASDPWTL 474 Query: 472 AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCD 531 +A P++ YE +E+V L+D+A KLEG+ R++ HA GVVI + PLY D Sbjct: 475 DRALNGVPEIASAYENEEDVHRLLDLAMKLEGLPRHSSTHAAGVVIGDRPLHQLVPLYRD 534 Query: 532 EEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPL 591 PVTQFD VE GLVKFDFLGL+TL+++N A++M+ R +D+ IPL Sbjct: 535 PRSDFPVTQFDMKYVEKTGLVKFDFLGLKTLSVLNKAVQMLKARG-----VEVDLDHIPL 589 Query: 592 DDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNF 651 DD+ F++L++ +T VFQLES GM+ + ++P FED+IALVAL+RPGP+ + + +F Sbjct: 590 DDEAVFELLKQGDTVGVFQLESEGMRRTLAAVKPTRFEDIIALVALYRPGPMDN--IPSF 647 Query: 652 IDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRA 711 RK+G EEI YP H L+PVL+ TYGII+YQEQVMQ AQVL+GY+LG AD+LRRA Sbjct: 648 GARKNGGEEIVYP-----HPLLEPVLKETYGIIVYQEQVMQAAQVLAGYSLGEADLLRRA 702 Query: 712 MGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQT 771 MGKK EM QRS F EG++K+ I A ++FDL++KFAGYGFNKSH+AAYALV+YQT Sbjct: 703 MGKKIQSEMDAQRSRFVEGSKKHDITENQANQLFDLIDKFAGYGFNKSHAAAYALVAYQT 762 Query: 772 LWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEI 831 WLKAHY AEF AA M DM T+K+ VD+ R GL+ LPPDIN F V +DG + Sbjct: 763 AWLKAHYRAEFYAAAMCFDMALTDKLQVFVDDMRRSGLRYLPPDINRSQSDFTV-EDGCV 821 Query: 832 VYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRL 891 Y +GA+KGVGE ++ I + R K G F+ L D R + + LNRR LE L +GAFD L Sbjct: 822 RYALGALKGVGEKAMDDICQEREKNGAFKSLDDFANRINPEHLNRRQLESLASAGAFDSL 881 Query: 892 GPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLD 951 G R A+ S + A + GQ +FG+ EE + W ++ Sbjct: 882 GVDRCAVKQSSEMIIGTAANIHRMRKSGQGGLFGM--EEMAMPSIKLPEDKIWSLTERMN 939 Query: 952 GERETLGLYLTGHPINQYLKEI--ERYVGGVRLKDMHP-----------TERGKVI--TA 996 E+E G + + HPI+ Y + R + + P R K I Sbjct: 940 AEKEAFGFFFSSHPIDNYRSLLSGLRIRSRADINRLAPPSYPQDDENPQDYRKKRIATQM 999 Query: 997 AGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDK-YQQLLEKDRILIVSGQVS 1055 A ++ R + RG R + D SG+ F + K +Q ++ +++ ++ Sbjct: 1000 AAMIEDVRWRDSARGRRYMMVAASDASGQFFASCFDEKATKDLEQAAKEKACVLMDVELD 1059 Query: 1056 FDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPV 1115 + +++ R + + E A + + +T + + L L + + +R G + Sbjct: 1060 WRPGDEAPRVSIRAI----QLCENLAPSVRLKMTVATGEAEALPALSELVNRYRGGQGEL 1115 Query: 1116 HLYYQRADARAR-LRFGATWRVSPSDRLLNDLRGLIGSEQVELE 1158 ++ D + G + +S L ++ L G + V+L+ Sbjct: 1116 YIRALLPDGASTDFLVGRHYILSA--ELKAKIKRLSGIQAVDLK 1157 >UniRef50_D2LTB4 DNA polymerase III, alpha subunit n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LTB4_BACS4 Length = 1128 Score = 1165 bits (3015), Expect = 0.0, Method: Composition-based stats. Identities = 421/1163 (36%), Positives = 665/1163 (57%), Gaps = 50/1163 (4%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL VHS+YS++ K LVK+A LG ALAITD + G++ FY A IKPI Sbjct: 3 FVHLHVHSEYSLLRSTGKLEELVKQAKHLGYEALAITDIDAMYGVIPFYKACLKNNIKPI 62 Query: 66 VGADF-NVQCDLLGDELTH-LTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIE 123 +G + V+ + H L LA NN GYQ+L L ++A Q + GP + + L Sbjct: 63 IGVELAYVKNQDEVKKDHHRLLFLAENNEGYQSLIRLTTRA-QEKSSSFGPYVTYEELQA 121 Query: 124 LNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRTGRPDEESYL 182 + G+I +S G V + + A + + + F + FLEL R +E L Sbjct: 122 NSNGVIAISPFAEGLVQQYIYDKQDASALQHFEWLQSIFGKENVFLELQNHWRQEEREKL 181 Query: 183 HAAVEL--AEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 A + + V+A+N + F DAH +I G LD+ S + Y+ Sbjct: 182 LAISNWLKGKEDAIRVIASNHIHFTHKEQHDAHRAIQSIRLGIKLDELPHD-YSSSEYYL 240 Query: 241 RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTE-DYLVKRAKEG 299 +S +EM LF EA NT+ +A +CNV + LG LP FP + +T +YL + +G Sbjct: 241 KSIDEMHHLFKKDGEASRNTLRVADKCNVKIELGNMILPHFPLPNETTATEYLRELCYKG 300 Query: 300 LEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVG 359 ++ER E +RL+ EL+VI++M + YFLIV +F++++ + + G Sbjct: 301 IQERYENP----------SEETWKRLDYELEVISEMKYEDYFLIVADFMRYAHEKKILTG 350 Query: 360 PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVA 419 PGRGS AGS+VAY LKIT++DP+++ L+FERFLN ER+SMPD D+DF +RD+VI +V Sbjct: 351 PGRGSSAGSIVAYVLKITNVDPMKYGLIFERFLNRERISMPDIDIDFPDNRRDEVIRYVK 410 Query: 420 DMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEP 479 + YGR V+QIITFGT+AAKA IRDVGRVLG +D+ISK IP P +TL A + Sbjct: 411 EKYGRTHVAQIITFGTLAAKAAIRDVGRVLGIELPIIDKISKSIPSRPNITLENALKEST 470 Query: 480 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 539 L + E++E+V L +A+++EG+ R++ HA G+V++ +T+ PL + + +T Sbjct: 471 VLQGMIESEEKVAELFTIAKEVEGLPRHSSIHAAGIVMSKEPLTNVVPLQIGND-EMYLT 529 Query: 540 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 599 QF D+E GL+K DFLGLR L+ I L++I+ ++ + +++ IP D +F + Sbjct: 530 QFPMGDIEDIGLLKMDFLGLRNLSFIEQILKLIHNQQHID----IELNNIPFHDVNTFTL 585 Query: 600 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 659 L + +T+ VFQLES GM+ ++KRL+P FED++A+ AL+RPGP+++ + +I R H E Sbjct: 586 LGKGQTSGVFQLESTGMRSVLKRLKPTEFEDIVAVNALYRPGPMEN--IPVYIRRLHKEE 643 Query: 660 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 719 +++YP H SL+ +L PTYG+++YQEQ+MQIA ++G++LG AD+LRRA+GKKK + Sbjct: 644 KVTYP-----HPSLEEILSPTYGVLIYQEQIMQIASKMAGFSLGEADILRRAVGKKKRDV 698 Query: 720 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 779 + +QR F +G+ G + + A ++++L+ +FA YGF +SH+ AY++++Y +LKA+Y Sbjct: 699 LEEQRQKFVQGSISKGYDEKEANEMYNLILRFADYGFPRSHAVAYSIIAYYLAYLKANYQ 758 Query: 780 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 839 EFM A+M + + + +K+ + E R G+K+ PP I F + + +I G+ AIK Sbjct: 759 LEFMTALMGSVIHHHDKLGEYITEARRSGMKVHPPSIQQSEAQFSI-KNKDIWIGLHAIK 817 Query: 840 GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 899 VG ++AI+E R K F LFDLCAR T+ L +R L+ LI++GA D + RA L+ Sbjct: 818 NVGVQAVQAILEERAKS-DFDSLFDLCARIPTRLLPKRALDALIVAGALDCIHDDRAQLL 876 Query: 900 NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 959 S+ DA++ ++ + E Q ++F ++PE Y S P + L+ E++ LG Sbjct: 877 ASVDDAIEYGEKLREQEKNAQTELFIEEVKQPE-----YMSVPPLSSKDRLNFEKQVLGF 931 Query: 960 YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTL 1019 Y +GHPI L +E + RL + E+ + AG++ +V+ TK+G+++ L Sbjct: 932 YASGHPIESELALVESF---GRLSVIDAKEKKSTLRIAGMIEDVKVIKTKKGDQMAFAQL 988 Query: 1020 DDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREK 1079 D +G +++ F + + L+K ++ V G V + G K+ + I + K Sbjct: 989 SDETGEIDLTFFPEVYKDCRLKLQKGELVFVQGNVQ--EHKGEGKVVVEKCTTISLLKSK 1046 Query: 1080 YARG----LAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWR 1135 A+G L + + + + L L++ LE G + V + Y+R + L W Sbjct: 1047 KAKGTEPTLYLKINALH-EKKGLTALKKELE-MSPGNVSVIIVYERT--KKALHLSEMWN 1102 Query: 1136 VSPSDRLLNDLRGLIGSEQVELE 1158 VS +RLL LR L+G E V L+ Sbjct: 1103 VSADERLLLKLRSLLGKENVYLK 1125 >UniRef50_B0TZK7 DNA-directed DNA polymerase n=16 Tax=Francisella RepID=B0TZK7_FRAP2 Length = 1159 Score = 1161 bits (3004), Expect = 0.0, Method: Composition-based stats. Identities = 487/1117 (43%), Positives = 706/1117 (63%), Gaps = 29/1117 (2%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F HLR+H+ YS++D + L +A + A+A+TD NL VKFY G+KPI Sbjct: 2 FSHLRIHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALSNGVKPI 61 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRG-YGAAGPIIDRDWLIEL 124 G + + + + L +LA NN GYQN+ L+SKAYQ + P+I +DWL + Sbjct: 62 FGVELKIDTEF---GVCDLVLLAENNQGYQNIVNLVSKAYQEADRFGSIPLIPKDWLKNI 118 Query: 125 N-EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRTGRPDEESYL 182 N +I L+GG+ G++G+++L + V+E ++ F D Y +E+ + +E Y Sbjct: 119 NLANVICLNGGQNGELGKAILAKDDIRVEEIISESIAIFGRDNYIIEIHKLEYENEGLYN 178 Query: 183 HAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRS 242 A+ELA L VATN F++S D+D HEIR I++ T+ D R ++ +QY++S Sbjct: 179 EKALELASKHNLIAVATNLTVFMESDDYDIHEIRACINEKTTILDESRKSKFTREQYLKS 238 Query: 243 EEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTE-DYLVKRAKEGLE 301 +EM + F+++P L NT+ IAKRCNVT LG+ LP D TE +Y K +GL+ Sbjct: 239 ADEMYQTFSELPVLLENTLAIAKRCNVTFDLGKPCLPTVDIPDGLTEREYFSKLCYQGLD 298 Query: 302 ERLAFLFPDE--EERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVG 359 +RLA + + ++ Y +RL+ E+ +I MGFPGYFLIV +FI+WSK+N +PVG Sbjct: 299 KRLAKILENRPVDKHEHIIKVYKDRLQREIDIICDMGFPGYFLIVEDFIRWSKENDIPVG 358 Query: 360 PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVA 419 PGRGSGAGSLVAY+L ITD+DPL + LLFERFLNPERVSMPDFD+DFC++ RD+VI++V Sbjct: 359 PGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDIDFCIQGRDRVIKYVE 418 Query: 420 DMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEP 479 YG+ +V QIIT+GTMAAK V+RDV RV+G +GF DRI+KLIP PG T K Sbjct: 419 QKYGKQSVGQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPETPGTTFKKILHEGE 478 Query: 480 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 539 L + +ADEEV +++ A+KLEG+ R+ GKHA G+VI+PT I+DFAP+YC+++G VT Sbjct: 479 PLYDEMQADEEVAEIVEKAQKLEGLPRSLGKHAAGIVISPTVISDFAPVYCEDKGGDIVT 538 Query: 540 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 599 QFDK DVE GLVKFDFLGL+ LTII A+ IN +R+ N E PLDI+ IPLDD+K+F + Sbjct: 539 QFDKGDVEDVGLVKFDFLGLKNLTIIKNAIASINAKRSAN-ETPLDISDIPLDDEKTFKL 597 Query: 600 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 659 LQ +T +FQLES+GM+ ++K L FE++IALVAL+RPGP+++ + F+DRKHGR+ Sbjct: 598 LQAGKTIGIFQLESQGMQQIVKDLGTSNFEEIIALVALYRPGPMEN--IPTFVDRKHGRK 655 Query: 660 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 719 + +Y H L+ VL TYGI +YQEQVMQ+AQ L+GYTLGGAD+LRRAMGKKKPEE Sbjct: 656 QTTY-----LHPLLEEVLRETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMGKKKPEE 710 Query: 720 MAKQRSVFAEGAEK-NGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778 M +QR +F EGA K + I A LA +IFD +E FAGYGFNKSH+AAYAL++YQT WLKAHY Sbjct: 711 MEQQRKIFKEGAAKYHNIEAGLADEIFDQMEAFAGYGFNKSHAAAYALIAYQTAWLKAHY 770 Query: 779 PAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAI 838 P E+MAA+M+ DM NT+++V + + MG+ +L P++N +Y G I+ G+GAI Sbjct: 771 PDEYMAALMSGDMGNTDQLVKFILDAKNMGITVLAPNVNKSVYDCIAASKGTILLGLGAI 830 Query: 839 KGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAAL 898 KG+G I++I+ R G F +FDL R D +K+N++ LE L +GA + +RA Sbjct: 831 KGLGGEAIKSILNEREASGEFSSIFDLTRRVDLRKVNKKALEALCFAGAIKDISKNRATA 890 Query: 899 MNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASC--QPWPEQVVLDGERET 956 NS+ A+K A + A GQ D+FG +E + + C + W + +L E++ Sbjct: 891 FNSIEKAIKNAGYVNEMAAAGQNDLFGFTEQESDTDTELERECIVEEWNLRELLINEKKA 950 Query: 957 LGLYLTGHPINQYLKEIERYVGGVRLKDMH----PTERGKVITAAG-LVVAARVMVTKRG 1011 LG+Y +GH I+ + + V D+ P G + ++ TK G Sbjct: 951 LGMYFSGHIID----DESHWRNHVSFSDLEKIQKPNMDGNSVRIIASMITPPARRKTKTG 1006 Query: 1012 NRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVM 1071 + I +DD R + ++ D + ++ D +++V G+VS+D K++ +V Sbjct: 1007 RVLYIINIDDEFDRADCLVGEDVFAAVKDNIQVDDVVVVEGKVSYDKQRECNKLSVDKVQ 1066 Query: 1072 DIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPH 1108 I + ++ + ++L + ++ L ++ +L+ + Sbjct: 1067 PISQYIDENFSKVELNLRSQNVNPTNLKKVLDNLKKN 1103 >UniRef50_B4S7C7 DNA polymerase III, alpha subunit n=11 Tax=Chlorobiaceae RepID=B4S7C7_PROA2 Length = 1190 Score = 1153 bits (2984), Expect = 0.0, Method: Composition-based stats. Identities = 424/1206 (35%), Positives = 654/1206 (54%), Gaps = 67/1206 (5%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS FVHL H+ YSM L GM ++A+TD++ + + + + A Sbjct: 1 MSNIDFVHLHTHTHYSMQSSPIFPKELFSACKKAGMESVAVTDYSAMFNMPELFSLASDA 60 Query: 61 GIKPIVGADFNVQCDLLGDELTH-----LTVLAANNTGYQNLTLLISKAYQRGYGAAGPI 115 G+K I+G++ + H L +L N GY+NL +L+S+A + G+ A P Sbjct: 61 GVKLIIGSEVYLLEQDAHHNGRHSVSPSLILLVKNEEGYKNLCILLSRAAREGFVNATPH 120 Query: 116 IDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGR 175 +D L E + GLI LSG G +GR+LL GN AFY + F D ++LEL R Sbjct: 121 VDSSLLKEYHAGLICLSGYYAGRIGRALLAGNRDEAASFTAFYHDIFGDDFYLELQRHFA 180 Query: 176 PDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYS 235 ++ + LAE G+ +VATN+V ++ D + VAI L + Sbjct: 181 TFDDQLNSDTIALAEQHGVQLVATNNVHYLQKKDAGRYRAMVAIRTKERLSSSNLQCLPN 240 Query: 236 PQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF--PTGDMSTEDYLV 293 + Y +S +EM LF++ L+NT IA +C+ E LP F P G +YL Sbjct: 241 SEHYFKSSDEMASLFSNEHHELSNTAAIAAKCSYVFCQQEPRLPHFLLPEGFSDEAEYLR 300 Query: 294 KRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKD 353 EG E+ A D E + + ++R+E EL VI MGF YFLIV + I S+ Sbjct: 301 HLTYEGAREKYA----DPESQGLTWQQVEDRIEKELGVIISMGFSSYFLIVSDLIAASRR 356 Query: 354 NGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQ 413 G VGPGRGS AGS++AY IT +DPL++ LLFERFLNPER+SMPD D+DF + + Sbjct: 357 LGYSVGPGRGSAAGSIIAYLTGITRIDPLKYKLLFERFLNPERLSMPDIDIDFTPVGKQR 416 Query: 414 VIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAK 473 V+++ D YG D+V++++ GT+ A+A IRD GRVL P VDR++KL+P PG TL + Sbjct: 417 VLDYTVDKYGDDSVAKVVAIGTLGARAAIRDAGRVLEVPLQEVDRLAKLVPSKPGTTLQQ 476 Query: 474 AFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLY---- 529 + +L E+ E+ + L+D A LEG RN HAG VVI + + PLY Sbjct: 477 GLDEVNELRELVESSSQNSTLMDYALALEGRARNVSMHAGAVVITDGPLEEQVPLYVSNK 536 Query: 530 -----------------------CDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIIN 566 + + K VTQFDK+ +E AGL+K D+LGL TL +I+ Sbjct: 537 IETEARKFADEYNEDELERGALKSNSDEKQVVTQFDKNWIETAGLLKIDYLGLETLAVID 596 Query: 567 WALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPD 626 L +I KR A+ +++ +P+D+KK+F + Q + +FQ ES+GM++ + +LQP Sbjct: 597 ETLHLIKKRHAE----VIELETVPMDNKKAFRIFQEGKMAGIFQFESQGMQNYMMQLQPT 652 Query: 627 CFEDMIALVALFRPGPLQS------GMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPT 680 D+IA+ AL+RPG L + VD F+DRKH RE I Y H L+ +L+ T Sbjct: 653 QIGDIIAMSALYRPGALNARVDPKRNAVDLFVDRKHNREPIDY-----MHPMLEEILKET 707 Query: 681 YGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAEL 740 YG+I+YQEQVMQI+QV+ G++L AD LR+AMGKKKPE M K ++ F EGA G++ +L Sbjct: 708 YGVIVYQEQVMQISQVMGGFSLAKADNLRKAMGKKKPEIMQKFKADFVEGAVNQGVHDKL 767 Query: 741 AMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGL 800 A +IFDL+ +FAGYGFNKSHSAAY +++Y T +LKAHYP EFM A++ +++ +T ++ L Sbjct: 768 ANRIFDLMAEFAGYGFNKSHSAAYGVLAYWTAYLKAHYPGEFMTAILNSEIGDTARMKHL 827 Query: 801 VDECWRMGLKILPPDINSGLYHFHVND-DG--EIVYGIGAIKGVGEGPIEAIIEAR-NKG 856 DE + ILPPDIN+ F ++D DG I G+ AIK VG A++ +R + Sbjct: 828 TDEARSFNISILPPDINTSDALFSIDDVDGLPAIRVGLSAIKQVG-NAARAVVTSRLRRK 886 Query: 857 GYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAE 916 + LFDL A D + +NR+ LE LI++GA D + P+RA L+ ++ A+K ++ Sbjct: 887 KEYVNLFDLTASVDLRAMNRKALECLILAGALDSIDPNRAKLIANIDKAIKFGQLQNRSV 946 Query: 917 AIGQADMF--GVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIE 974 +GQ F + + P P+ L E++ +G YL+ HP++ + ++ E Sbjct: 947 TLGQCGFFSDDNAGGMQDSLYPDMDPADPMPDSEKLQAEKKLVGFYLSRHPLDPFRRDWE 1006 Query: 975 RYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDA 1034 + D + + G+VV+ + ++GN++ ++D SG+ + +F Sbjct: 1007 AFANLHL--DARNVQPSRQYKIIGVVVSTKPHQDRKGNQMLFGVIEDFSGKADFTVFASV 1064 Query: 1035 LDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQ-I 1093 ++++ L++ D +++ + G LK+ RE++ + + RE + + + + Sbjct: 1065 YEQFRHLIKVDEAVML--VAEAESSGGALKLLVREIVPVRKVRENCIDKVVLKINADDPL 1122 Query: 1094 DDQLLNRLRQSLEPHRSGT-IPVHLYYQRADARARLR-FGATWRVSPSDRLLNDLRGLIG 1151 D + L +R+ E H+ GT + + Q A+ LR F + SD L+ L ++G Sbjct: 1123 DVEKLAAVREVFETHKGGTAVDFEVKVQSAENIEMLRVFARATPIDASDETLSKLEKILG 1182 Query: 1152 SEQVEL 1157 + V + Sbjct: 1183 PDNVAI 1188 >UniRef50_C4F7F9 Putative uncharacterized protein n=2 Tax=Collinsella RepID=C4F7F9_9ACTN Length = 1272 Score = 1153 bits (2983), Expect = 0.0, Method: Composition-based stats. Identities = 425/1277 (33%), Positives = 624/1277 (48%), Gaps = 147/1277 (11%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFT-------------------- 45 FVHL H+ YSM+DG + +V +A LGMPA+AITD Sbjct: 8 FVHLHNHTVYSMLDGATRIKDMVSRAVELGMPAVAITDHGYMYGVPELGLACDAVNHGTP 67 Query: 46 ---NLCGLVKFYGAGHGAG-------------------------------------IKPI 65 F G IKPI Sbjct: 68 EYKVWSHDKSFLEKGRRDELECPDQESDPRGYEQHMKDLAMWDEKGNIDELKPPLVIKPI 127 Query: 66 VGADFNVQC-----DLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 G + EL H+ + A N GY NL +S+A +G+ P + D Sbjct: 128 FGCEVYFTPDETLARDRKPELYHMVLFAQNEKGYVNLMQTVSEAAVQGF-YYKPRVTLDN 186 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRTGRPDE- 178 L EGLI S G + + + RG A E + + F P +++E+ G + Sbjct: 187 LRRHREGLIASSACIAGIIPKCIDRGEMATAIEWAETFRDTFEPGNFYIEIQEHGITTDS 246 Query: 179 ----ESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNY 234 E +++AE G+ V+ATND ++ D ++ + I +DDP R R Sbjct: 247 GITDEELSRTLIQIAEQVGVKVIATNDFHYLTREDAPVQDVVMCIGTNSKIDDPNRIRME 306 Query: 235 SPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFP--TGDMSTEDYL 292 + YM++EEEM LF PEA NTVEIA++CNV + LP +P + E Sbjct: 307 GSEFYMKTEEEMRALFPYCPEACDNTVEIAEKCNVELDWDSIILPNYPLLDPGETHESQF 366 Query: 293 VKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSK 352 + +EGL +R D + R + ER E E +VI GF YFLIV E+++W+K Sbjct: 367 RRECEEGLAKRYG---DDWDGREIGGVDIRERFEFEYKVICDKGFAAYFLIVAEYVRWAK 423 Query: 353 DNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRD 412 NG+ VGPGRGS AG+LVAYA+ IT DPL L+FERFL+PER MPD D+DF E+R Sbjct: 424 QNGIGVGPGRGSAAGALVAYAMDITTFDPLSNGLMFERFLSPERTEMPDIDMDFDDERRL 483 Query: 413 QVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA 472 +VIEHV +YG + V+ +IT+ T+ AK I D RVL +P R+SK++ DPG+ L Sbjct: 484 EVIEHVRQLYGPEKVTHVITYSTIKAKQAINDAARVLDYPVYMGQRLSKMVSADPGVKLK 543 Query: 473 KAFEA--------EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524 + E P E Y+ DE+ + +ID A +EG+TR G HA V+I + + Sbjct: 544 QVLEKQPGKEDLYSPDFVEAYQKDEDARRIIDTALSIEGLTRGEGVHACAVLICRDAVNE 603 Query: 525 FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584 P D +G +TQ++ V GL+K DFLGLRTLT+I+ A I K + + Sbjct: 604 HVPTKLDTKGGVEITQYEGHTVADMGLLKMDFLGLRTLTVISKAKANIKKSFGID----I 659 Query: 585 DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644 D+ AIP DD K F+++ T VFQ+ES GM IK ++P ++ ++AL+AL+RPGPL Sbjct: 660 DVDAIPFDDPKIFELMSSGRTAGVFQVESAGMTATIKNMKPTEYKHVVALIALYRPGPLG 719 Query: 645 SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704 +GMV ++I+R +G+E D L +L TYG ++YQEQVM I+ + G++ G Sbjct: 720 AGMVTSYINRMNGKEPAVSYD-----PRLDGILGETYGTMVYQEQVMLISVEMCGFSKGE 774 Query: 705 AD-MLRRAMGKKKPEEMAKQ------------RSVFAEGAEKNGINAELAMKIFDLVEKF 751 +D +R+ + KKK + + Q + GAEKNG +A KI+D V +F Sbjct: 775 SDSRIRKPVAKKKIKMLTDQVFKWSDGEDETIYDHWMNGAEKNGYKRSVAQKIWDDVLEF 834 Query: 752 AGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKI 811 A Y FNKSHSA YA++ QT WLKAHYP E+MAAV+T+ T+K+V V C G+ + Sbjct: 835 ASYAFNKSHSAGYAILVMQTAWLKAHYPNEYMAAVLTSYTGKTDKIVHYVSACRHDGIAV 894 Query: 812 LPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDT 871 LPPDIN F +G + +G+ I+GVGEG +AIIE R KGG F+ L D R D+ Sbjct: 895 LPPDINESGTEFTATPEG-VRFGLAGIRGVGEGVTQAIIEEREKGGPFKNLHDFVERVDS 953 Query: 872 KKLNRRVLEKLIMSGAFDRLGPHRAALMNSLG-----DALKAADQHAKAEAIGQADMFGV 926 + NRRV+E LI GAFD G R LM+ + + + AA + K A GQ +F V Sbjct: 954 SQANRRVIEALIKGGAFDSTGYPRRQLMHFVDRDNPENIIDAAVKRQKDRAAGQTSLFDV 1013 Query: 927 LAE---EPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERY------- 976 + ++ Q W + L E+E LG+Y++ HP+ Y + + Sbjct: 1014 FGDVEGSGFEVIVPEPDGQEWDRHMKLSFEKEVLGIYVSDHPLRPYEYALAKAREFTLSQ 1073 Query: 977 -------VGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVM 1029 +G GK AG+V VTK G+ + I L+D G V+ Sbjct: 1074 IDTGFETMGPTGNAVNQEIPEGKPYWWAGMVSGVGKRVTKNGDPMAIVQLEDMEGEATVV 1133 Query: 1030 LFTDALDKYQQLLEK-----------DRILIVSGQVSFDDFSGGLKMTAREVMDIDEARE 1078 +F + + L D + V G++ D ++ A+E+ + + E Sbjct: 1134 VFPKTYKQCEGYLYGEVDPETGAQLSDAFIRVKGKLERSDRGD--QIIAQEIEPLVLSEE 1191 Query: 1079 -KYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVS 1137 + I + + + RL L + G V L+ ++AD +R RV+ Sbjct: 1192 SNRPKVFEIMVPSSRFSQSNMARLATVLNTNPGGD-RVELFIEQADG-QTMRAEIPTRVN 1249 Query: 1138 P-SDRLLNDLRGLIGSE 1153 S L+ +++G++G++ Sbjct: 1250 ARSIPLIAEVKGIVGNK 1266 >UniRef50_B5JFB3 DNA polymerase III, alpha subunit subfamily, putative n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JFB3_9BACT Length = 1259 Score = 1150 bits (2976), Expect = 0.0, Method: Composition-based stats. Identities = 427/1250 (34%), Positives = 661/1250 (52%), Gaps = 121/1250 (9%) Query: 1 MSEP---RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAG 57 MS P FVHL H+ YS++DG AK ++ LGMPALA+TD NL G + FY + Sbjct: 1 MSNPAEGPFVHLHNHTHYSLLDGCAKPLRAAQRCLELGMPALAMTDHGNLFGAIDFYRSC 60 Query: 58 HGAGIKPIVGADFNVQCDLLGDELT------------------------------HLTVL 87 GIKP++G + D E H V+ Sbjct: 61 KKVGIKPLIGCELYYVNDHKQSERPRRERKRTDDIGDIPEHYVPPKEDFPKYQIHHKGVI 120 Query: 88 AANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGN 147 A N GYQNL L+S A+ G P D + L + ++GLI LSG G + L+ G+ Sbjct: 121 AKNFEGYQNLCKLVSDAHINGV-YYKPRADIETLAKYSKGLIGLSGCINGVAAQYLIYGD 179 Query: 148 SALVDECVAFYEEHFP-DRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFID 206 + A + + F + YF+E+ G P + + ++LA+ L V+ ND ++ Sbjct: 180 EENARKATATFVDIFGKENYFIEIQDHGMPVQRRIIPGLLKLAKEFDLKVICANDSHYVY 239 Query: 207 SSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKR 266 D + H+ + I G ++D R + S + Y++S +EM E+F ++PE+L NTV +A+ Sbjct: 240 KEDANPHDALLCIQTGKIIEDENRMKYPSQEFYLKSRQEMYEIFKEVPESLDNTVHVAEM 299 Query: 267 CNVTVRLGEYFLPQFPTGDM------------------------------------STED 290 ++ + E P F + E+ Sbjct: 300 VDLEIPFDEDHYPVFECPPELGYKSDDDAFDRILDIYELEKTKVNKQNGDDTVCKLTAEE 359 Query: 291 ---------YLVKRAKEGLEERLAFLFPDEEERLKRRPEYDE-------RLETELQVINQ 334 L+ K+GL+ER + D + + E ++ +++ +L +I Sbjct: 360 RANHKKNGFVLLDLCKKGLKERYGVDYDDRASYVPKEGEREDFAEFVCDQMDFQLAIITG 419 Query: 335 MGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNP 394 GF YFLIV +FI +++ G+PVGPGRGSGAG ++AY LKITD+DPL F LLFER LN Sbjct: 420 TGFVDYFLIVWDFINFARSQGIPVGPGRGSGAGCIIAYVLKITDIDPLRFGLLFERMLNL 479 Query: 395 ERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYG 454 ERVS PDFD+DFCM +RD V+ +V + YG D+V+ IITFGT AK ++RD+ RV + Sbjct: 480 ERVSPPDFDIDFCMRRRDVVVNYVREKYGHDSVANIITFGTFGAKMIVRDLARVNNLQFA 539 Query: 455 FVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGG 514 D+I+K+IP + ++L + E L + K +++ + +EG+ RN GKHA G Sbjct: 540 EADKIAKMIPDELNISLDDSVEKSSDLRNEIAVNPVAKKIVEHGKVIEGMVRNTGKHACG 599 Query: 515 VVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINK 574 ++I I + P+ E TQ+ K E GL+K DFLGL+TLT+I+ A + I Sbjct: 600 IIIGDQPIHNLVPVTLQE--GDLTTQYPKGPSEDLGLLKMDFLGLKTLTVISDAQDNIQA 657 Query: 575 RRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIAL 634 R P DI + L+D K++D+L T VFQLES GM++L K++ FE++IAL Sbjct: 658 TRNL---PDFDIEKVTLEDPKTYDLLNAGNTVGVFQLESGGMQNLCKQIGLSVFEEIIAL 714 Query: 635 VALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIA 694 +AL+RPGP+Q + FI+ K ++I P H L+ ++ TYG+++YQEQVM+ A Sbjct: 715 IALYRPGPMQ--FIPQFIEGKRDPKKIQIP-----HPLLEELVSETYGVLVYQEQVMESA 767 Query: 695 QVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEK-NGINAELAMKIFDLVEKFAG 753 ++++GYTLGGADMLRRAMGKK M Q+ +F +GA+ +GI + A+ IF ++EKFA Sbjct: 768 RIIAGYTLGGADMLRRAMGKKIASVMEAQKQIFVDGAKATHGIKEKEALNIFAILEKFAQ 827 Query: 754 YGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILP 813 YGFNKSHSAAYA++SY+T +LKA+YP EFMAA+++A++ N +KV +DE MG+++L Sbjct: 828 YGFNKSHSAAYAMLSYRTAYLKANYPVEFMAALLSAELGNADKVSHFIDEANSMGIRVLS 887 Query: 814 PDINSGLYHFHVNDD----------GEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELF 863 PDIN F D G IV+G+GA+KGVG+ + II R+ G + + Sbjct: 888 PDINKSKEMFTPVIDSEEDIADGKLGSIVFGMGAVKGVGDSAAKTIIAERDANGPYEGMD 947 Query: 864 DLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADM 923 +L R DTK +N+RVLE LI +GAFD G R +L + L A+ A + + + GQ Sbjct: 948 ELLERVDTKSVNKRVLENLIKTGAFDFTGEPRGSLFHRLEGAMNQAAEAQRDKERGQESF 1007 Query: 924 FGVLAEEP-EQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRL 982 F ++ EEP E+ + + + + +L E+E LG Y++GHP+++Y I + L Sbjct: 1008 FDMIVEEPKEKDAPQWDLSKQFTKTEMLRYEKELLGFYVSGHPLDEYKG-IAEALTNFDL 1066 Query: 983 KDMHPTERGKVITAAGLVVAARVMVTKR-GNRIGICTLDDRSGRLEVMLFTDALDKYQQL 1041 + A G+ ++++ +L R L+V + DA ++Y Q Sbjct: 1067 SKVDQLGDKVEFQACGVAGGVVKKLSRKDNRPWAFFSLGTRKTSLQVNCYADAFEEYGQN 1126 Query: 1042 LEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRL 1101 LE D ++++ G V D G +++ E+ ++ + + L + D L + Sbjct: 1127 LENDALVLIKGTVIRRD--GEVRLNVLEIHPLEAFMPGQIKHITWVLDPDKDTDSFLYKY 1184 Query: 1102 RQSLEPHRSGTIPVHLYYQRAD---ARARLRFGATWRVSPSDRLLNDLRG 1148 R+ L+ R GT + ++ +D A A WRV+ ++ ++LR Sbjct: 1185 REVLDRTR-GTTTSDIAFRISDTCIASANTASSLRWRVNTNE--WSELRK 1231 >UniRef50_Q160T2 DNA polymerase III, alpha subunit n=39 Tax=Rhodobacterales RepID=Q160T2_ROSDO Length = 1183 Score = 1147 bits (2968), Expect = 0.0, Method: Composition-based stats. Identities = 484/1201 (40%), Positives = 685/1201 (57%), Gaps = 78/1201 (6%) Query: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61 + PRF+HLR HS+YS+++G + L GMPALA+TD N+ ++F A GAG Sbjct: 3 THPRFIHLRTHSEYSLLEGALRLKKLPSMCRDAGMPALALTDKNNMFAALEFSVAMSGAG 62 Query: 62 IKPIVGADFNV-----QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPII 116 ++PI+G +V Q + +LA + GY+NL L S Y G A P + Sbjct: 63 VQPILGCQVDVAYVTAQPGERERAPAPVVLLAQSEAGYENLMRLNSCLYIDK-GGALPQV 121 Query: 117 DRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRT--- 173 L G+I L+GG G VG+ L G + + F DR ++EL R Sbjct: 122 TLSELESNAGGIICLTGGPDGPVGQLLQLGQMPAAQALMDRLKAAFQDRLYIELQRHPGE 181 Query: 174 -GRPDEESYLHAA-VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRP 231 G+P++E VE+A A LP+VATNDV F +S ++AH+ + I +G +D Sbjct: 182 SGQPEKERLTERGFVEMAYAMDLPLVATNDVYFPNSDMYEAHDALICIAEGAYVDQQDDR 241 Query: 232 RNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDY 291 R + Q Y +S+ EM LFAD+PEA+ NTVEIAKRC + LP+F ++ + Sbjct: 242 RRLTNQHYFKSQSEMVALFADLPEAIENTVEIAKRCAFQAYRRDPILPKFADDEV---EE 298 Query: 292 LVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWS 351 L K+A GL+ RL + +Y +RL+ EL +I MGFPGYFLIV +FI+W+ Sbjct: 299 LRKQAHAGLKARLEVI-----PHAASVEDYTKRLDFELGIIEGMGFPGYFLIVADFIKWA 353 Query: 352 KDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKR 411 K+ G+PVGPGRGSGAGSLVAYAL +TDLDPL ++LLFERFLNPERVSMPDFD+DFCM++R Sbjct: 354 KEQGIPVGPGRGSGAGSLVAYALTVTDLDPLRYNLLFERFLNPERVSMPDFDIDFCMDRR 413 Query: 412 DQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPD--PGM 469 ++VI +V + YGRD V QIITFG + +KA +RD+GRVL PYG VDR+SK+IP + + Sbjct: 414 EEVIRYVQEKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSKMIPVEGVKPV 473 Query: 470 TLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLY 529 ++ KA EP+L E + +E V L++ +++EG+ RNA HA GVVI + PLY Sbjct: 474 SIEKALADEPRLREEAKNEEVVARLLNYGQQVEGLLRNASTHAAGVVIGDRPLDALVPLY 533 Query: 530 CDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMI-------------NKRR 576 D + P TQF+ VE AGLVKFDFLGL+TLT+I A+E I + Sbjct: 534 QDPRSEMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVEQIMASGRPLHIAADGTELY 593 Query: 577 AKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVA 636 DI AIPLDD++S+ + ++T AVFQ+ES GM D +KR++P C ED++ALVA Sbjct: 594 EPAPGTENDINAIPLDDERSYKLYASAKTVAVFQVESSGMMDALKRMKPTCIEDIVALVA 653 Query: 637 LFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQV 696 L+RPGP+++ + + + K+G E +Q H + +LE T GII+YQEQVMQIAQV Sbjct: 654 LYRPGPMEN--IPTYCEVKNGLRE-----LQSIHPLIDDILEETQGIIVYQEQVMQIAQV 706 Query: 697 LSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGF 756 ++GY+LGGAD+LRRAMGKK EEMAK+R F +GA NG++ + A ++FDL+EKFA YGF Sbjct: 707 MAGYSLGGADLLRRAMGKKIAEEMAKERPKFEKGAVANGVDKDKAREVFDLLEKFANYGF 766 Query: 757 NKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPD 815 NKSH+AAYA+VSYQT WLKA++P EFMA VM D+ T+K+ +E + L +PP Sbjct: 767 NKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAIYFEEVRKRLELPWVPPC 826 Query: 816 INSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGG--------YFRELFDLCA 867 +N F V DG +VY +GA+K VG ++ I + R F LFDL Sbjct: 827 VNRSDATFKVA-DGALVYALGALKNVGVEAMKLITDGRRADPGDEGSPDKPFATLFDLAR 885 Query: 868 RTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVL 927 R D K++ +R LE L SGAFD L +R + +L + + + +A Q +FG Sbjct: 886 RVDLKRVGKRPLEMLARSGAFDALDANRRRVFGALDALVNYSAAIHEQKASNQVSLFGEA 945 Query: 928 AEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGG------VR 981 ++ E W L E + +G YL+GHP++ Y+ +++R G + Sbjct: 946 GDD--LPEPRLHPVDDWQPAERLSEEFKAVGFYLSGHPLDDYMGQLKRKWGNDRGVPFMT 1003 Query: 982 LKDMHP--TERGKV-ITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKY 1038 L ++ TERG + AG+V + + RGNR + D +G EV LF+D L+ Sbjct: 1004 LDELTEKVTERGAMNARLAGIVAGRQERKSARGNRFAFAQMSDPTGAYEVTLFSDTLEAA 1063 Query: 1039 QQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYAR-GLAISLTDRQIDDQL 1097 + LE ++V+ V S LK+ R V ID A + GL + + + Sbjct: 1064 RDYLEAGSKVVVT--VEATMESDQLKLLGRSVGPIDAATADVSSMGLKVFVDA----PEA 1117 Query: 1098 LNRLRQSLE---PHRSGTI--PVHLYYQRAD--ARARLRFGATWRVSPSDRLLNDLRGLI 1150 + + LE G PV L AD + G + V+P ++ ++ L Sbjct: 1118 VAAVATVLEGAGRAVKGRAQGPVMLCLMGADLPGEVEVELGQDFIVNP--QIKGAIKSLS 1175 Query: 1151 G 1151 G Sbjct: 1176 G 1176 >UniRef50_Q6Q8S4 Predicted DNA polymerase III, alpha subunit n=1 Tax=uncultured marine gamma proteobacterium EBAC20E09 RepID=Q6Q8S4_9GAMM Length = 1148 Score = 1146 bits (2965), Expect = 0.0, Method: Composition-based stats. Identities = 491/1169 (42%), Positives = 699/1169 (59%), Gaps = 33/1169 (2%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS F HLRV S++S+ GL +V+ A+ L MP++A+TD +N+ G+VKF+ Sbjct: 1 MSHL-FSHLRVSSEFSISQGLLTIDQIVENASRLSMPSVALTDKSNMFGMVKFFNKCESV 59 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 GIKPI G D+ + LA N G++NL +IS A+ PII D Sbjct: 60 GIKPISGVTIR-TIFDGDDKSYEILCLAKTNIGHKNLMKIISNAHNSN-SFNVPIIKFDD 117 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 180 LI L + ++++SGGR + L N ++ + + E F D + LE+ RT R DE Sbjct: 118 LISLKDDILIISGGRGTHIFEYLKINNFEDANKKIDKFRESFGDDFILEVQRTNRSDELE 177 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 Y + ++ + +P++ATNDV F D+D HE +V I+ G TL+DP R + +S QQY Sbjct: 178 YFKNILPISYEKNIPLIATNDVLFSSQDDYDTHETKVCINTGKTLNDPNREKLFSDQQYF 237 Query: 241 RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKEGL 300 +S +EM LF D + NT EI+K+CNV++ YFLP++P D +K+ Sbjct: 238 KSSKEMSLLFNDYSSLVDNTNEISKKCNVSLSTKGYFLPEYPVPKEHDFDSFIKKLSS-- 295 Query: 301 EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360 +RL L + ++ EY RL EL I +MGF YFLIV +FI+WSK+N VPVGP Sbjct: 296 -DRLNTLISGLAK--DKQDEYKSRLNYELDQIKKMGFSSYFLIVYDFIEWSKNNDVPVGP 352 Query: 361 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420 GRGSGAGSLVAYAL IT LDP++ LLFERFLNPER+SMPDFDVDFCMEKRD VI++V+ Sbjct: 353 GRGSGAGSLVAYALGITTLDPIKHGLLFERFLNPERLSMPDFDVDFCMEKRDLVIDYVSQ 412 Query: 421 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQ 480 YG +AVSQI TFGTMAA+AVIRDV R LG P+ DRI+K+IP PG+TL +A + +P Sbjct: 413 KYGSEAVSQIATFGTMAARAVIRDVTRALGKPHPLGDRIAKMIPFTPGITLDQAKKEQPL 472 Query: 481 LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQ 540 E ++EV+ ++D+A KLEG+ RN GKHAGGVVIAP I+DF P+Y D +TQ Sbjct: 473 FAETIRKEDEVREIVDLAYKLEGIARNVGKHAGGVVIAPGSISDFCPVYVDRSSDSIMTQ 532 Query: 541 FDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDML 600 +DK DVE GLVKFDFLGLRTLT+I+ A++ IN+ + LD+ IPLDDK F L Sbjct: 533 YDKDDVEKIGLVKFDFLGLRTLTVIDRAVKSINED--LDEFNKLDLNKIPLDDKNVFKFL 590 Query: 601 QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE 660 +TTAVFQLES GM+DLIKRL+P FE++ AL+AL+RPGPL SGM D F+DRKHG Sbjct: 591 SSGKTTAVFQLESSGMRDLIKRLKPTKFEEITALLALYRPGPLNSGMHDEFVDRKHGNSP 650 Query: 661 ISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM 720 ++YP H+ L+P+LE TYG+I+YQEQVM+ A+VL+G++LG AD+LRRAMGKKK EEM Sbjct: 651 VTYP-----HKLLEPILEETYGVIVYQEQVMEAARVLAGFSLGQADILRRAMGKKKKEEM 705 Query: 721 AKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA 780 +QR +F G KN I+ A IF+L+ +FA YGFNKSHSAAYAL+SYQT +LK +YP Sbjct: 706 EEQREIFVNGCAKNDISTSNAEHIFNLINQFAEYGFNKSHSAAYALISYQTAYLKTYYPE 765 Query: 781 EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG 840 FMA+V+++++ NT+K+ L+ EC RM +K+L P+I G F VN + EI YG+GAIKG Sbjct: 766 YFMASVLSSELSNTDKIYSLIQECSRMNIKVLKPNILLGKKRFFVNANKEIEYGLGAIKG 825 Query: 841 VGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMN 900 V I+ + E R R L+D + D K ++ LE L SGAFD L P R + Sbjct: 826 VASSFIDHVCEKR-ASIKLRNLWDFSQKIDIKLGGKKSLEALSYSGAFDSLAPTRNVAIE 884 Query: 901 SLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLY 960 + D ++ + + D+F + E+ + E + L+ E+++LG Y Sbjct: 885 CVKDMVRDGANRSAKNNLKSGDLFAQVEEDFDPYE-KFKDLPKLKLTEKLEFEKKSLGYY 943 Query: 961 LTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLD 1020 L+GHP+ +I+ L T + + L+ R + ++G + Sbjct: 944 LSGHPVLAIENKIK---NLRTLAIQQVTNDTQKASLVCLINNVRQIKDRKGQPLIFVNFS 1000 Query: 1021 DRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGG------LKMTAREVMDID 1074 D +G ++ ++ +D ++ ++++ I+ + G V DD+ +M RE ID Sbjct: 1001 DGTGSMDGIISSDVIENCHSVIKEGEIVNLKGLVELDDYRSKELGNTMFRMRIREAKAID 1060 Query: 1075 EAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRS-----GTIPVHLYYQRADARARLR 1129 + + + I + ++ D L L L+ G+ +++ + A + Sbjct: 1061 NELIRLIKDVIIDV--QKSDATSLEDLSAKLDSINKEFWLDGSCSLNVKVMSEQSEAIID 1118 Query: 1130 FGATWRVSPSDRLLNDLRGLIGSEQVELE 1158 G ++ SPS + L L + G +E++ Sbjct: 1119 LGDDYKFSPSLKNLTYLEDIFGKNILEIK 1147 >UniRef50_C8W788 DNA polymerase III, alpha subunit n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8W788_ATOPD Length = 1278 Score = 1143 bits (2958), Expect = 0.0, Method: Composition-based stats. Identities = 425/1286 (33%), Positives = 633/1286 (49%), Gaps = 156/1286 (12%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFT-------------------- 45 FVHL HSD+S++DG ++ +V KA GMPALA+TD Sbjct: 3 FVHLHNHSDFSILDGASRVPDMVSKAVEFGMPALALTDHGYLFGIPDFDLACRKYNEALK 62 Query: 46 ---NLCGLVKFYGA--------------------------------------GHGAG--- 61 C V+ + A Sbjct: 63 DFGQWCHDVECFEKGWDLEEPPADAPDAQEHDRVHAQWASDVQIWNQTHNIEAVKANKPS 122 Query: 62 --IKPIVGADFNVQCDLLGDEL-----THLTVLAANNTGYQNLTLLISKAYQRGYGAAGP 114 IKPI G + D ++ HL +LA N TGY NL ++S+A + P Sbjct: 123 PLIKPIFGCEAYFILDDCIEKGTKQVRYHLILLAKNETGYVNLMKMMSEAGSKEMFYYKP 182 Query: 115 IIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTG 174 + L +EG+I S G + R L G + Y++ F D ++LE+ G Sbjct: 183 RTTLEMLKRYHEGIICTSACVSGIIPRMLFEGRPEEAERWAKIYQDIFGDDFYLEIQDHG 242 Query: 175 RPD-------EESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDD 227 D + + V++ G+ VVATND ++ D +I I G +DD Sbjct: 243 LSDPSWGGYTDRTLAERIVKMGHDLGIKVVATNDNHYLTKEDASVQDIASCIGSGARVDD 302 Query: 228 PKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT--GD 285 R R + Y++SE+EM ++F+ PEA+ NT+E+A +CN + +LP+FP Sbjct: 303 ENRKRMTGSEFYLKSEQEMRQIFSWCPEAIENTIEVANKCNYELDWTHMYLPKFPDLAEG 362 Query: 286 MSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVM 345 ++E+ K + GL R D + + +R E E +I + GF YFLIV Sbjct: 363 ETSEERFRKECELGLARRYG---DDWQNVVINEINVKDRFEYEYDIICKKGFADYFLIVQ 419 Query: 346 EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405 E+++W+K+NG+ VGPGRGS AG++VAYA+ IT DPLE L+FERFL+P+R MPD D+D Sbjct: 420 EYVRWAKENGIGVGPGRGSAAGAIVAYAMDITSFDPLENGLMFERFLSPQRSEMPDIDMD 479 Query: 406 FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465 F E+R +V+EHV +YG + VS +IT+ T+ AK I D RVLG+P R+SK+IP Sbjct: 480 FDDERRLEVVEHVRQIYGSERVSHVITYSTIKAKQAINDACRVLGYPVYMGQRLSKMIPG 539 Query: 466 DPGMTLA----KAFEA-------EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGG 514 DP L KA E E YE D + + +ID A +EG+ R G HA Sbjct: 540 DPNAHLKFVLHKAQEGQKGADQYSADFEEAYENDPDARRIIDAALSIEGLHRGEGVHACA 599 Query: 515 VVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINK 574 V+IAPT + D P D +G +TQ++ V GL+K DFLGLRTLT+I+ A++ + Sbjct: 600 VLIAPTPVNDHVPTKVDTKGGVEITQYEGHSVADMGLLKMDFLGLRTLTVISRAIKNVKD 659 Query: 575 RRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIAL 634 + +D+ +IP D + + +L+ T VFQ+ES GM IK ++P ++ ++AL Sbjct: 660 SYGID----IDVDSIPFTDPEIYRLLREGRTAGVFQVESAGMTATIKGMRPTEYKHIVAL 715 Query: 635 VALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIA 694 +AL+RPGPL +GMV ++I+R +GREE+ D L +LE TYG ++YQEQVMQI+ Sbjct: 716 IALYRPGPLNAGMVTSYINRMNGREEVKDYD-----PRLHDILEETYGTMVYQEQVMQIS 770 Query: 695 QVLSGYTLGGADMLRRAMGKKKPEEMAK------------QRSVFAEGAEKNGINAELAM 742 +SG+T G +D +R+A+ KKK + M + + + GA +NG + +A Sbjct: 771 MKMSGFTAGESDKVRKAVAKKKIKLMQEVVQHWDDGTDETMEAHWKNGAVRNGFDRSVAE 830 Query: 743 KIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVD 802 I+D V +FA Y FNKSHSA YA++ QT W+KAHYP EFMAAV+T+ M T+K+V V Sbjct: 831 SIWDDVLEFASYAFNKSHSAGYAILVMQTAWIKAHYPHEFMAAVLTSYMGKTDKIVHYVS 890 Query: 803 ECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFREL 862 C G+KILPPDIN F +G I +G I+GVG G EAI+ R KGG F + Sbjct: 891 ACRHEGIKILPPDINESGKDFTATKEG-IRFGFAGIRGVGAGVGEAIMLERQKGGPFANI 949 Query: 863 FDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLG-----DALKAADQHAKAEA 917 D R D + R V+E LI +GAFD G R +M+ + + + AA + K +A Sbjct: 950 HDFVDRMDASQAKRNVVEALIKAGAFDSTGYTRMQMMSFVDKNNPQNIIDAATKRQKDKA 1009 Query: 918 IGQADMFGVLAEEPEQIEQSY---ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIE 974 +GQ MF + AE W + L E E LG+Y++ HP+ Y + Sbjct: 1010 VGQFSMFDMFAEVEGSGFSDIVPEPDGVEWDRRFKLTKEYEVLGIYVSDHPLRPYEYALA 1069 Query: 975 R---------------YVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTL 1019 + + + GK I AG+V TK G+ + I TL Sbjct: 1070 KSRDYALAEIEENVEVQLPNGAMSQQFKVPEGKPIRFAGMVTNVMKRTTKNGDPMAIVTL 1129 Query: 1020 DDRSGRLEVMLFTDALDKYQQLL-----------EKDRILIVSGQVSFDDFSGGLKMTAR 1068 +D G + +++F K +LL + D + V G++ D ++ A+ Sbjct: 1130 EDMEGSVTIVMFPKLYKKAARLLAGDVDPETGESQSDIFISVLGKLERSDRGD--QVIAQ 1187 Query: 1069 EVMDID-EAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARAR 1127 EV I+ + + L I + Q++ Q++ L Q + + + + D Sbjct: 1188 EVSPIELNSANNTPKTLVIHMPASQLERQVIETLGQIFSRYPGMDC-IEIRVE-TDRGDV 1245 Query: 1128 LRFGATWRVS-PSDRLLNDLRGLIGS 1152 +R R+ S LL +L+ LIG Sbjct: 1246 MRMEIPTRIDGRSMVLLTELKDLIGQ 1271 >UniRef50_A8VX11 DNA polymerase III, alpha subunit n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VX11_9BACI Length = 1126 Score = 1135 bits (2935), Expect = 0.0, Method: Composition-based stats. Identities = 408/1145 (35%), Positives = 629/1145 (54%), Gaps = 51/1145 (4%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 + HL VH+++S++ L + L ++A++ G ALA+TD N+ G V FY A GIKPI Sbjct: 3 YAHLHVHTEFSLLSSLIRIDDLTEQASSQGFTALAMTDLNNIYGAVSFYRACRARGIKPI 62 Query: 66 VGADFNVQCDLLG---DELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLI 122 +G + +++ L D T L + A + GYQ+L L++ A R A P + D L Sbjct: 63 LGVELSMERLSLNSGRDVPTSLLLYAKSFRGYQSLVRLVTMACARE---AEPYVTMDELE 119 Query: 123 ELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPD-RYFLELIRTGRPDEESY 181 E L+++S G + G + F + ++E+ E Sbjct: 120 AEGEELVVISPFSEGRMQLLAEEGRDEEASAFLKTIRNVFGEEDVYVEIQNHWLRWERER 179 Query: 182 LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241 + + +PVVATN V ++ F A + AI DG +++ +P Y++ Sbjct: 180 MQRIRKWLTNERVPVVATNHVHALEPDQFGALQTLQAIKDGVRIEEIDESLR-APDMYLK 238 Query: 242 SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTE-DYLVKRAKEGL 300 +EEEM E FA AL T EI +C V + LG LP +P D T L ++GL Sbjct: 239 NEEEMREQFAKWNTALDVTEEIVAKCEVELPLGGQILPSYPVSDGETAASLLRNWCEKGL 298 Query: 301 EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360 ER ++ ERLE ELQVI+ MG+ YFLIV +F+ ++ NG+ GP Sbjct: 299 YERYH----------APEEKHRERLEKELQVIHDMGYEDYFLIVADFMDYAHRNGILTGP 348 Query: 361 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420 GRGS AGSLVAY L+ITD+DP+ +DLLFERFLNPERVSMPD D+DF RDQVI +V + Sbjct: 349 GRGSAAGSLVAYLLRITDVDPILYDLLFERFLNPERVSMPDIDIDFSDLDRDQVIHYVHE 408 Query: 421 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQ 480 YG V+QI+TFGT+AAKA +RD RVLG P VDR+SKLIP P MT+ A E P Sbjct: 409 RYGASKVAQIVTFGTLAAKAALRDTARVLGIPTADVDRLSKLIPARPNMTITAALEEAPA 468 Query: 481 LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQ 540 + + L+ A +EG+ R+ HA GVV++ +TD PL +G +TQ Sbjct: 469 FNKAIREMPKGDLLLKTALDIEGIARHTSIHAAGVVMSKDPLTDIVPLQPSNDG-LTITQ 527 Query: 541 FDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDML 600 F D+E GL+K DFLGLR L+ + E + ++ + LD+ +PL+D++ F +L Sbjct: 528 FPMGDLEDLGLLKMDFLGLRNLSFMERIAETVKEKTGE----ALDLTRLPLEDERMFALL 583 Query: 601 QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE 660 + ET +FQLES+GM+ ++K+L+P+ FED++A+ AL+RPGP++ + +I RK+G E Sbjct: 584 GKGETNGIFQLESQGMRRVLKQLKPERFEDIVAVNALYRPGPMEQ--IPLYIRRKNGEEP 641 Query: 661 ISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM 720 ++YP HE L+ +L PTYG+++YQEQ+MQIA ++G++L ADMLRRA+ KKK EE+ Sbjct: 642 VTYP-----HEDLREILAPTYGVMIYQEQIMQIASKMAGFSLAEADMLRRAVSKKKKEEL 696 Query: 721 AKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA 780 + R++F EGA G + A ++++L+E+FA YGFN+SH+ AY+++S + WLK +P Sbjct: 697 ERSRTLFVEGAVGRGYAEDEATRVYELIERFANYGFNRSHAVAYSMISCRLAWLKTVHPE 756 Query: 781 EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG 840 FMAA+M + +K+V + E +MGL++ P + F VN +GEIV + I+ Sbjct: 757 AFMAALMEQSVHAPDKLVRYIAEAKQMGLRVSGPSVQRSSRRFTVN-NGEIVMALQVIRH 815 Query: 841 VGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMN 900 G II AR + G F LFD C R K ++R+ +E LIM+GA D G R +L Sbjct: 816 TGHHAAAEIIRAREEEGPFGSLFDFCKRVSLKIVSRKTVESLIMAGAMDDFGVDRTSLFA 875 Query: 901 SLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLY 960 SL DA + D+ A+ +F E E+ E Y LD ERE +G Y Sbjct: 876 SLEDAFQFGDEDAEG-----FSLF-----EQEEGEPDYRQGGRMTLMDKLDEEREVMGFY 925 Query: 961 LTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLD 1020 L+GHP+ L+ ++ Y L+ M + AG++ R++ TK+G+++ ++ Sbjct: 926 LSGHPVEDDLELLKTYKRQSILEAMGVASEKMTVRLAGMIEHIRLIRTKKGDQMAFVSMS 985 Query: 1021 DRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR--- 1077 D +G +++ +F + L YQ L+K+ ++ G++ + + + + + ++ R Sbjct: 986 DETGAMDITVFPEQLKHYQMALKKNGLIFTEGKMQW--RNDAWNLILDKAVSLETLRSRV 1043 Query: 1078 -EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRV 1136 E+ L I + Q + + N++ ++L G +PV L ++ + W V Sbjct: 1044 KEEAQPTLYIRFSHAQEKEGVPNKV-EALLQDTPGEVPVVLKFESTGEVR--KLSELWNV 1100 Query: 1137 SPSDR 1141 + Sbjct: 1101 KVDES 1105 >UniRef50_C6XJW1 DNA polymerase III, alpha subunit n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XJW1_HIRBI Length = 1145 Score = 1129 bits (2921), Expect = 0.0, Method: Composition-based stats. Identities = 462/1162 (39%), Positives = 672/1162 (57%), Gaps = 38/1162 (3%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 + +PRFVHLRV S S++ + L K G PA+AITD N+ G ++ Sbjct: 10 LDKPRFVHLRVRSALSLLGSMITIKKLCKWTFENGFPAVAITDDNNMFGALELSETLAPM 69 Query: 61 GIKPIVGADFNVQCDLLGD-ELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRD 119 G++PI+ ++ + E T L + A N GY+N+ +L +K + + D Sbjct: 70 GVQPIIAITLHIYDRINPAAEPTELALFAQNEAGYKNMMILTTKGFLESPSGGTGVYLDD 129 Query: 120 WLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEE 179 L E +EGLI +GG G+V + G+ E + E FP+R ++EL R GR E+ Sbjct: 130 VL-EHSEGLICTTGGGNGEVTQLCAAGDEEGAREYLLKLNEAFPNRLYVELQRHGRLTED 188 Query: 180 SYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQY 239 V+LA LP+VATN+ RFI + AH+ + I + RP+ SP+QY Sbjct: 189 KAEELLVDLAYELDLPLVATNEARFIKRAQHKAHDALLCIAGSTYVSVQDRPK-ASPEQY 247 Query: 240 MRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKEG 299 M++EEEM LF+D+PEA+ NT EIA+RC+ + LP F D + L ++A+EG Sbjct: 248 MKTEEEMINLFSDLPEAIENTCEIARRCSYRPAWRKPILPNFTGDDGDEGEELDRQAREG 307 Query: 300 LEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVG 359 L+ RL+ EEE++ Y +RL+ EL +I QMGFPGYFLIV +FI+W+K++ +PVG Sbjct: 308 LKMRLSSGILYEEEQV-----YWDRLDFELNIIRQMGFPGYFLIVSDFIKWAKEHDIPVG 362 Query: 360 PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVA 419 PGRGSGAGSLVA+ L ITDLDPL F LLFERFLNPERVSMPDFDVDFC ++R +VIE+ Sbjct: 363 PGRGSGAGSLVAWVLTITDLDPLRFGLLFERFLNPERVSMPDFDVDFCQDRRHEVIEYTK 422 Query: 420 DMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGM--TLAKAFEA 477 YG D V+ IIT+GT+ AKAVIRDVGRV P+G VD++SKLIP +P TL +A + Sbjct: 423 RKYGADRVAMIITYGTLQAKAVIRDVGRVHQLPFGQVDKLSKLIPFNPANPPTLQEAIDG 482 Query: 478 EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHP 537 EP+ + +E+V+ L++ A +LEG+ RNAG HA GVVI + + +PLY D + P Sbjct: 483 EPKFKQEMRENEDVRNLVETALELEGLYRNAGTHAAGVVIGDRPLVELSPLYKDPKSDIP 542 Query: 538 VTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSF 597 TQF+ E+ GLVKFDFLGL+TLT+I AL+ + + E DD++++ Sbjct: 543 ATQFNMKWAEHNGLVKFDFLGLKTLTVIQRALKFVISEGKQLTEKWHT-----FDDEEAY 597 Query: 598 DMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHG 657 +L ET VFQLES GM+D +++++PDC ED+IAL++L+RPGP+++ +D ++ RK G Sbjct: 598 KLLSSGETLGVFQLESTGMRDTLRKVKPDCIEDIIALISLYRPGPMKN--IDTYVARKEG 655 Query: 658 REEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKP 717 REEI Y H+ LKPVLE TYG+I+YQEQVM+IAQ+L+GY+LG AD+LRRAMGKKKP Sbjct: 656 REEIDY-----LHDDLKPVLEETYGVIVYQEQVMRIAQILAGYSLGEADLLRRAMGKKKP 710 Query: 718 EEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAH 777 EEM KQ+ F EGA K ++ E A IF+LV +FAGYGFNKSH+AAYA+++YQT +LKA Sbjct: 711 EEMLKQKVRFLEGAAKKDVSKERAEFIFELVNEFAGYGFNKSHAAAYAVIAYQTAYLKAK 770 Query: 778 YPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGA 837 +P EF+A M+ D+ NTEK+ E R+ + ++ PDI F V D +I Y +GA Sbjct: 771 HPVEFLAGSMSLDLTNTEKLAAFFQETKRLKIPVVTPDITLCNADFDVRDQ-KIYYALGA 829 Query: 838 IKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAA 897 +KGVG+ + + ARN+ F +LFD R D +++N+RV + L G FD+L +RA Sbjct: 830 VKGVGKEAMLDVERARNE-KPFEDLFDFAERVDPRQINKRVYQALSKCGGFDQLEKNRAK 888 Query: 898 LMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETL 957 + ++ + Q +FG + + PW + +LD E ++ Sbjct: 889 AFEASEMLAAMSNAANRDRNSNQNSLFG----DEPPMRPKLPKAAPWSSEKILDYELSSV 944 Query: 958 GLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLV-VAARVMVTKRGNRIGI 1016 G YL+GHP++ L+ R + + M + G+V V G + Sbjct: 945 GFYLSGHPLDDILEGPARERIVLSSQMMELGRERAALEMIGVVKVRVEKPSMSGGGKFAY 1004 Query: 1017 CTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEA 1076 TL D SG E+ + + L + + E + V +V D L+ + +D+A Sbjct: 1005 ITLSDPSGEYELFVAPETLAETRDYFEVGSRVNVHVKVRRKD--DELRFSVDGARPLDKA 1062 Query: 1077 REKYARGLAISLTDRQIDDQLLN---RLRQSLEPHRSGTIPVHLYYQRADARARLRFGAT 1133 L + + D +QL + +LR+ G I V + + L Sbjct: 1063 ALGAPAKLCVRVGDLASMEQLAHVAVQLREV-SSQTIGIIQVEIPLED-QRLITLELDGH 1120 Query: 1134 WRVSPSDRLLNDLRGLIGSEQV 1155 + + ++ L+ ++G E+V Sbjct: 1121 YPMD--YAAMSALKSVVGVERV 1140 >UniRef50_C8PHM9 DNA polymerase III, alpha subunit n=1 Tax=Campylobacter gracilis RM3268 RepID=C8PHM9_9PROT Length = 1381 Score = 1129 bits (2920), Expect = 0.0, Method: Composition-based stats. Identities = 420/1132 (37%), Positives = 651/1132 (57%), Gaps = 70/1132 (6%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS + HL +H++YS++DG K + L + + G A AITD N+ G + FY Sbjct: 1 MS--DYTHLHLHTEYSLLDGANKVSELAELLQSRGTKACAITDHGNMFGAIDFYQTMKKH 58 Query: 61 GIKPIVGADFNVQCDLL-----GDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPI 115 GIKPI+G + + + HL +LA N TGY+NL L S+A+ G+ P Sbjct: 59 GIKPIIGIETYLHNHDDIGDKSDRQRYHLILLAKNETGYKNLMYLSSRAFLDGFYYY-PR 117 Query: 116 IDRDWLIELNEGLILLSGGRMGDVGRSLLR---------GNSALVDECVAFYEEHFPDRY 166 I++ L E +EGLI S G+V L R G + Y+E F + + Sbjct: 118 INKKILKEHSEGLICSSACLAGEVEFHLNRSERNLKRGAGGYEAAKKAALEYKEIFGEDF 177 Query: 167 FLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLD 226 +LE++R G ++ + + L+ G+ ++ATND + AH++ I G T++ Sbjct: 178 YLEIMRHGIGEQLNVDKDLIRLSREIGVKIIATNDAHYSRKDRAKAHDVYQCISMGKTIN 237 Query: 227 DPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM 286 D R ++ + Y++S+EEM LFADIPE + NT EI ++CN+ E P Sbjct: 238 DGDRLKHVVSEFYVKSDEEMRRLFADIPEVIENTAEIVQKCNLKFAFDEKDYAPTPPNFK 297 Query: 287 STEDY-----------------------LVKRAKEGLEERLAFLFPDEEERLKRRPEYDE 323 T +Y +EGL+ERL F+ P + Y E Sbjct: 298 FTIEYAARLGLSLPQPDERYSFANDDFLFDHLCREGLKERLKFIDP------AKHEIYRE 351 Query: 324 RLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLE 383 RLE EL +I M F GY +IV +FI W+KD+ +PVGPGRGS AGS+ AYAL+ITDLDP+ Sbjct: 352 RLEKELAIIKNMHFSGYMVIVQDFINWAKDHDIPVGPGRGSAAGSICAYALRITDLDPIP 411 Query: 384 FDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIR 443 ++LLFERFLNP R+SMPD DVDFC +R +VI++V D YG+ V+Q+ TFG + A+ VIR Sbjct: 412 YNLLFERFLNPSRISMPDIDVDFCQARRGEVIDYVIDQYGKFNVAQVATFGKLLARGVIR 471 Query: 444 DVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEG 503 DV RV P D+++KLIP G+TL +A++AEP+L E +AD + + + A LEG Sbjct: 472 DVARVCDMPLSQADKMAKLIPDKLGITLTQAYDAEPKLKEFIDADPIAQQVWEFALGLEG 531 Query: 504 VTRNAGKHAGGVVIAPTKITDFAPLYCDEEGK--HPVTQFDKSDVEYAGLVKFDFLGLRT 561 + RNAG HA GVVI+ + + APL+ ++G+ VTQ+ K+ +E L+KFDFLGL+ Sbjct: 532 LNRNAGMHAAGVVISNEPLWNKAPLFKQDKGEDARLVTQYTKNYLEDVDLIKFDFLGLKN 591 Query: 562 LTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIK 621 L +I+ A +++ +R ++ + I +D+K+++ +Q T +FQ+E GM+DL Sbjct: 592 LDVIDNAAKLVKRRYGRD----IVWEEIDFNDRKTYETIQSGNTLGIFQIEGAGMQDLAM 647 Query: 622 RLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTY 681 L+PD FED+IA+++L+RPGP+ ++ +FI KHG + SY LK +LEPTY Sbjct: 648 NLRPDRFEDIIAMISLYRPGPMD--LIPDFIRIKHGELKASY-----IFPELKEILEPTY 700 Query: 682 GIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELA 741 GII+YQEQVMQI Q + G++LG AD++RRAMGKK +++A R + GA++ G + A Sbjct: 701 GIIVYQEQVMQIVQKVGGFSLGDADLVRRAMGKKDEKKLAHMREQYLSGAKELGFDVAKA 760 Query: 742 MKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLV 801 ++FDL+ KFA YGFNKSH+AAY+++++QT +LK +YPAEFMAA++T++ NT+K+ + Sbjct: 761 DELFDLIMKFASYGFNKSHAAAYSMITFQTAYLKTYYPAEFMAALLTSEEGNTDKISKYI 820 Query: 802 DECWRMGLKILPPDINSGLYHFHVNDDGE------IVYGIGAIKGVGEGPIEAIIEARNK 855 DE R+G+ +LPP IN L F V DD I+YG+GAIKGVG IE I+E +++ Sbjct: 821 DEASRLGIGLLPPSINQSLRGFSVVDDENSKSGTSIIYGLGAIKGVGAAAIENILELQSE 880 Query: 856 GGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKA 915 F+ + D +R D ++N++V+E LI +GA D LG R A++ ++ + L+ + + Sbjct: 881 AK-FQSIDDFASRVDNFRVNKKVIESLIYAGAMDCLGKSRLAMIQNMENILEVMKKITEI 939 Query: 916 EAIGQADMFGVLAEEPEQIEQSYASCQ-PWPEQVVLDGERETLGLYLTGHPINQYLKEIE 974 + + +FG + + S+ +P+ +L E++T+G+YL+GHP++ Y +EIE Sbjct: 940 KKDAASSLFGEDEDMTSGMSVSFVDTDKEFPQGEILKFEQQTVGVYLSGHPLDDYKEEIE 999 Query: 975 RYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDA 1034 + + + G + +TK G ++GI + D G E+ +F +A Sbjct: 1000 GIDYTLSSAFSEIEGDSAEVLSVGRIEDLSTRMTKTGKKMGILNVLDLHGSFELAVFDNA 1059 Query: 1035 LDKYQQLL--EKDRILIVSGQVSFDDFSG-GLKMTAREVMDIDEAREKYARG 1083 L + L E++R ++S G +++ +M + AR+ R Sbjct: 1060 LKAIENLSPQERERPYAFMIKISKSAVGGAAYQLSFLSMMSLQNARDASFRP 1111 Score = 62.3 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 81/226 (35%), Gaps = 18/226 (7%) Query: 862 LFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAE-AIGQ 920 + DL R +L L + G+F+ + +ALKA + + E Sbjct: 1025 IEDLSTRMTKTGKKMGILNVLDLHGSFE---------LAVFDNALKAIENLSPQERERPY 1075 Query: 921 ADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERE-TLGLYLTGHPINQYLKEI--ERYV 977 A M + + Q D G++L+ +P+ Y ++ + Sbjct: 1076 AFMIKISKSAVGGAAYQLSFLSMMSLQNARDASFRPHAGVFLSENPLKAYAAQLGAIAHT 1135 Query: 978 GGVRLKDMHPTERGKV-ITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALD 1036 ++ E V I G + TK G ++ T+ D +G E+ F D D Sbjct: 1136 KSNEFDELAGDEDASVKILCVGKIENVHTRTTKSGKQMANLTVLDLAGSFEMSAFGDICD 1195 Query: 1037 KYQQL--LEKDRILIVSGQVSFD--DFSGGLKMTAREVMDIDEARE 1078 L E +R + ++S + + G ++ E++ +D A+ Sbjct: 1196 AVTALTDAELERPMAFWARLSKNTSPYGGKFQIYLDEILTLDAAQN 1241 >UniRef50_Q9K838 DNA polymerase III subunit alpha n=1 Tax=Bacillus halodurans RepID=DPO3A_BACHD Length = 1116 Score = 1126 bits (2914), Expect = 0.0, Method: Composition-based stats. Identities = 409/1154 (35%), Positives = 662/1154 (57%), Gaps = 51/1154 (4%) Query: 7 VHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIV 66 VH+ VHS+Y+++ + + LV+KA A ALA+TD + G V FY A +G+KPI+ Sbjct: 4 VHIHVHSEYTLLSSMCRIPALVEKAKAAQFSALALTDRHVMYGAVPFYKACKESGLKPII 63 Query: 67 GADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNE 126 G + V+ D + L + A +N GY++L L + + + + L+ + Sbjct: 64 GMETTVRF--AEDRESDLLLYARSNKGYEHLLKLSTI--IQCREEKEKYVTWEELLAYKD 119 Query: 127 GLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRTGRPDEESYLHAA 185 L+ + G V L + + F ++H + +LE+ T R E Sbjct: 120 DLLYVIPYSGGFVRACLEDEALERGERFIQFLKDHLGGESVYLEIQGTDRSKVEPIN--- 176 Query: 186 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 245 +LA +P+V + ++ ++ D DA ++ AI +G +++ + + E Sbjct: 177 -QLAAKLAIPLVCSQHIQVLEREDLDAWKVIQAIREGVLVEELR--IEQEEDVCFFTLTE 233 Query: 246 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTG-DMSTEDYLVKRAKEGLEERL 304 M + F PEAL NT ++A RC+V + LG+ LP+F T + S EDYL K ++G +ER Sbjct: 234 MEQTFRAYPEALQNTKKLADRCHVELTLGKPRLPKFQTPNEQSAEDYLRKLCEQGAKERY 293 Query: 305 AFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGS 364 + E +RL EL VI +MGF YFLIV +F++++++ + GPGRGS Sbjct: 294 GEEW---------TKEKAQRLGEELAVIERMGFSDYFLIVWDFMRFAREASIVTGPGRGS 344 Query: 365 GAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGR 424 AGSLVAY L ITD+DPL +DLLFERFLNPER+S+PD D+DF +R++VI +V YG Sbjct: 345 VAGSLVAYVLFITDVDPLHYDLLFERFLNPERISLPDIDLDFPDHRREEVIVYVKKKYGA 404 Query: 425 DAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEI 484 + V+QI+TFGT+AA+A +RDVG+ L P +++ISK I PGMTL KA+ +L ++ Sbjct: 405 NRVAQILTFGTLAARASVRDVGKALAIPPNVIEKISKEISGRPGMTLVKAYNENERLRQL 464 Query: 485 YEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKS 544 A +E + ++ +ARK+EG+ R+ HA GVVI+ +T+ L + G+ P+TQ Sbjct: 465 VHASDEAQKVMKLARKVEGLPRHTSTHAAGVVISEQPLTEVIALQHGQ-GEVPLTQGTME 523 Query: 545 DVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSE 604 VE GL+K DFLGLR LT++ ++ + + + L++ +PL+D K+F +L + E Sbjct: 524 TVEDVGLIKMDFLGLRNLTLLEMVVKRVRETYGHS----LNVKQLPLNDAKTFALLAKGE 579 Query: 605 TTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYP 664 TT VFQLES GM+ +++ L+P+ F D++A+ AL+RPGP++ + ++I K G +EI+Y Sbjct: 580 TTGVFQLESGGMRKVLRELKPNTFADIVAVNALYRPGPME--FIPDYIQGKEGTKEITY- 636 Query: 665 DVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQR 724 H L+P+L TYG+I+YQEQ+MQIA ++G++LG AD+LRRA+ KKK E + +Q Sbjct: 637 ----LHPDLEPILSSTYGVIVYQEQIMQIAAKMAGFSLGEADLLRRAISKKKGEALRQQE 692 Query: 725 SVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMA 784 F GA + G E A KI++L+ +FA YGFNKSH+ AY++++YQ +LKAHYP+ F A Sbjct: 693 EAFVTGAVRQGYEQETAKKIYELIVRFANYGFNKSHAVAYSMLAYQLAYLKAHYPSSFYA 752 Query: 785 AVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEG 844 A+ + + EK+ L+ E + G+++LPP ++ HF ++G + + + ++ V Sbjct: 753 ALASTIWNQPEKLERLLQEMKQQGIRVLPPSLSKSDIHFSEEEEG-VRFPLLPLRYVSVR 811 Query: 845 PIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGD 904 I +I+AR + R LFDLC+R D + + RV+E LI +GA D LG RA L+ ++ + Sbjct: 812 AIRELIKARREA-PVRSLFDLCSRVDGRIVTSRVMESLIKAGALDELGE-RATLLANIEE 869 Query: 905 ALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGH 964 A + A+Q + + +F + EEPE Y +P + L E+E +G YL+GH Sbjct: 870 AFQFAEQVKEFQE-NTGGLFQLSVEEPE-----YIKVEPLTDLEKLAYEKEAVGFYLSGH 923 Query: 965 PINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSG 1024 P+ Y + + +Y RL + TER + + AG++ R + TKRG +G T+ D +G Sbjct: 924 PLLAYTESLRQY---DRLTYLEGTER-RFVKLAGMIHRIRRIRTKRGEVMGFLTMSDETG 979 Query: 1025 RLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGL 1084 E ++F Y+ L++ + V G++ S L++ +V+ + +K L Sbjct: 980 EWEAVVFPAVWAMYEWGLKEGELYFVEGKMDRG-RSEELQLLVDKVLPLKHMLKKEKEKL 1038 Query: 1085 AISLTDR-QIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLL 1143 + +T + + + LN +R+ L+ H G PV +YY++ R ++ + VS S LL Sbjct: 1039 FLKITADVEKEVERLNDIRRLLQVHH-GPTPVVMYYEK--QRKTIQLPEKYHVSLSFTLL 1095 Query: 1144 NDLRGLIGSEQVEL 1157 ++L L+G E V + Sbjct: 1096 HELEQLVGKEHVVV 1109 >UniRef50_Q2G7G3 DNA polymerase III, alpha subunit n=2 Tax=Alphaproteobacteria RepID=Q2G7G3_NOVAD Length = 1215 Score = 1124 bits (2907), Expect = 0.0, Method: Composition-based stats. Identities = 446/1206 (36%), Positives = 640/1206 (53%), Gaps = 71/1206 (5%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M FV LR+ S Y+M+DG + K AA G PA AITD L G V + A Sbjct: 20 MPHAAFVPLRIFSSYTMLDGAIDPKAIAKTAAERGFPAAAITDRNGLYGSVAYAKACKDM 79 Query: 61 GIKPIVGADFNVQCDLLGDELT----------HLTVLAANNTGYQNLTLLISKAYQRGYG 110 G++P++G V T L + A + GY NL L+S+A+ Sbjct: 80 GVQPVIGTMLAVARPERDGAATGFGPAAPTIDWLALYAQDARGYDNLCHLVSRAHLDRPL 139 Query: 111 AAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170 P + L+ +GLI L+ G + + L G + + V E FP+R ++E+ Sbjct: 140 EFAPHVVLADLVGHTDGLICLTAASEGALAQLLAGGQQSAAEAYVDRLLELFPERLYIEI 199 Query: 171 IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230 R EE+ A ++LA AR LP+VATN F + + +DAH+ + I +D R Sbjct: 200 ARRNDAVEEASETALIDLAYARDLPLVATNPACFAERTFYDAHDAMLCIASSTHVDSADR 259 Query: 231 PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTED 290 PR S + +++ M ELF D+PEALANT+ +A+RC V + LP Sbjct: 260 PR-SSKEWWIKPAAVMEELFKDLPEALANTLVVAQRCAVMPPKRKPILPSLAGDQEGEAR 318 Query: 291 YLVKRAKEGLEERLAFLFPDEEERLKRRP---------------------------EYDE 323 + +++GL RL +P+ R +Y + Sbjct: 319 MCAEDSRKGLVLRLEPYYPESTHAELARVLCLGPDAEPVAADHPQLVEAGVWEEVLDYRK 378 Query: 324 RLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLE 383 RLE E+ +IN+MGF GYFLIV +FI+W+K++G+PVGPGRGSGAGSLVA+AL ITDLDP++ Sbjct: 379 RLEFEIAIINRMGFGGYFLIVADFIKWAKEHGIPVGPGRGSGAGSLVAWALTITDLDPIK 438 Query: 384 FDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIR 443 LLFERFLNPERVSMPDFD+DFC +R +VI +V YG D V+QIITFG + A+AV+R Sbjct: 439 LGLLFERFLNPERVSMPDFDIDFCETRRGEVIRYVQRKYGEDHVAQIITFGKLKARAVLR 498 Query: 444 DVGRVLGHPYGFVDRISKLIPPDP--GMTLAKAFEAEPQLPEIYEADEEVKALIDMARKL 501 D GR+L YG DR+ K++P P L +A +L Y+ D EVK LID+A +L Sbjct: 499 DTGRILQMSYGQTDRLCKMVPNHPTDPWPLPRALNGVAELKREYDRDPEVKRLIDLAMQL 558 Query: 502 EGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRT 561 EG+ RN+ HA GVVI + PLY D PVTQFD VE AGLVKFDFLGL+T Sbjct: 559 EGLPRNSSTHAAGVVIGDRPLAQLVPLYRDPRSDMPVTQFDMKHVEDAGLVKFDFLGLKT 618 Query: 562 LTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIK 621 L+++ A++++ KR +D++A+P DD++++ +LQ +T VFQLES GM+ + Sbjct: 619 LSVLRKAVDLMKKR-----SIEIDLSALPWDDEQTYKLLQSGDTVGVFQLESEGMRRTLA 673 Query: 622 RLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTY 681 ++P F D+IALV+L+RPGP+ + + F RK+G E I YP H+ L +L TY Sbjct: 674 AVKPTNFGDIIALVSLYRPGPMDN--IPLFGRRKNGLEAIEYP-----HDKLAGILSETY 726 Query: 682 GIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEK-NGINAEL 740 GI +YQEQVMQ AQ+L+GY+LG AD+LRRAMGKK EM QR F +G ++ +GI A Sbjct: 727 GIFVYQEQVMQAAQILAGYSLGDADLLRRAMGKKVQAEMDAQRQRFVDGCKEVSGIPAAK 786 Query: 741 AMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGL 800 A ++FDL++KFAGYGFNKSH+AAYAL++YQT WLK HYP EF AA M DM +EK+ Sbjct: 787 ANELFDLIDKFAGYGFNKSHAAAYALLAYQTAWLKTHYPHEFYAAAMCFDMHQSEKLSVF 846 Query: 801 VDECWRMGLKILPPDINSGLYHFHVN---DDGEIVYGIGAIKGVGEGPIEAIIEARNKGG 857 VD+ R G+ + PDIN F V D + Y + ++ VGE +E I+E R G Sbjct: 847 VDDMRRNGVALAGPDINHSEAEFTVERTHDGYAVRYALAGLRNVGEKAMEQIVEEREANG 906 Query: 858 YFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEA 917 F L DL R +NRR LE L GA D L P+RA ++ + + A++ +++ Sbjct: 907 PFASLDDLFRRIPAGSMNRRQLEALAAGGALDCLEPNRAQIIANAELLMAVAEEASRSRT 966 Query: 918 IGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIE--- 974 GQ +FG ++ + +PW + ERE G Y HP+ +Y Sbjct: 967 SGQGGLFG--GDDHATPATRLSDTKPWSRADQMAAERENFGFYFAAHPVEEYRAVASANG 1024 Query: 975 -RYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTD 1033 R G + P R + A LV + TK+G + D SG F + Sbjct: 1025 ARSYGSLMTSSGEPGGRSGAV-MAALVENVQKRKTKKGKDFVMADFSDSSGLFSASCFEE 1083 Query: 1034 AL-DKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQ 1092 +L + +QQ + ++++ ++ + ++T R + A + + L + Sbjct: 1084 SLVEPFQQWAREGTCVLLNVELDRPNPDEPPRVTVRGARPLASV--TSASRMVLKLDVSR 1141 Query: 1093 IDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARL-RFGATWRVSPSDRLLNDLRGLIG 1151 + ++ L L G V + + L R G + + L+ L + G Sbjct: 1142 T--EAISDLAMLLPRRPDGKGEVLARLRTGGPKEPLVRLGNDFILD--SDLIERLIPIEG 1197 Query: 1152 SEQVEL 1157 V L Sbjct: 1198 LANVAL 1203 >UniRef50_A4IRQ9 DNA polymerase III alpha subunit n=5 Tax=Geobacillus RepID=A4IRQ9_GEOTN Length = 1095 Score = 1121 bits (2900), Expect = 0.0, Method: Composition-based stats. Identities = 408/1154 (35%), Positives = 613/1154 (53%), Gaps = 64/1154 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL V S YS+ A LV KA LG ALA+TD L G + FY G++PI Sbjct: 5 FVHLHVLSGYSLFQSTATVEALVAKAKQLGYRALALTDHQVLYGAIPFYRECQRHGLRPI 64 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 +G +V L +LAAN GY++L + + R + L L+ Sbjct: 65 IGMMADV-VLDGDSGAFPLVLLAANEEGYRHLIEISTAVQMR----EEKHVHEAALRRLS 119 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 185 G+I ++ G G V L G A E + Y + F R ++ + R G Y A Sbjct: 120 GGIIAITPGLNGRVESFLAAGEVAQAKETLLRYRQLFAGRLYIAIQR-GERTRAPYESAL 178 Query: 186 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 245 + LAE G+PVVATN+VR+++ D A AI DG L ++Y+ + +E Sbjct: 179 LRLAEETGVPVVATNEVRYVEREDALAWRCLQAIGDGVPLAHIPEE----DERYLAALDE 234 Query: 246 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTED-YLVKRAKEGLEERL 304 M FAD+PEAL N++ IA +C + + G + LP+FP D T D YL + ++GL R+ Sbjct: 235 MARRFADLPEALENSMNIANQCELHIEFGHWRLPKFPVPDGETADSYLRRLCEQGLARRV 294 Query: 305 AFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGS 364 Y ERLE EL +I M F YFLIV + + +++ G+ GPGRGS Sbjct: 295 PS----------ADARYRERLEHELHIIQTMRFSDYFLIVADVLAYARQRGILTGPGRGS 344 Query: 365 GAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGR 424 AGSLVAYAL ITD+DP+E+ LLFERFLNPERVS+PD D+DF ++R++VI +V + YGR Sbjct: 345 AAGSLVAYALSITDVDPIEYGLLFERFLNPERVSVPDIDLDFPDDRREEVIRYVVETYGR 404 Query: 425 DAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEI 484 D V+QIITFGT AKA +R+ +VLG +R+ L+P G+T+++ Sbjct: 405 DHVAQIITFGTFGAKAALRETAKVLGVSGREAERVMALLPNKQGVTISQWHRESAAFRRA 464 Query: 485 YEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKS 544 A + + + +A+KLEG+ R+ HA GV+I+P + PL G+ P+TQ+ Sbjct: 465 LRALPDGERWLTIAKKLEGLPRHTSIHAAGVIISPDPLMRHVPLQPSH-GEWPLTQYAMG 523 Query: 545 DVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSE 604 +E GL+K DFLGLRTLT++ + +I ++ K P D+ A+PLDD+K++ +L + Sbjct: 524 ALEALGLLKIDFLGLRTLTLLGQMVRLIERQTGK----PFDVRALPLDDEKTYALLSAGD 579 Query: 605 TTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYP 664 T+ VFQLES GMK ++ L+P E+++A+ AL+RPGP+ M+ +I RK G E ISY Sbjct: 580 TSGVFQLESSGMKRVLAELRPATLEEIVAVNALYRPGPM--NMIPTYIRRKRGEEAISY- 636 Query: 665 DVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQR 724 H L+P+L PTYG+++YQEQ+MQIA ++G++LG AD+LRRA+ KK+ +A+ R Sbjct: 637 ----LHPDLEPILAPTYGVLIYQEQIMQIAARIAGFSLGKADVLRRAVAKKEKALLAEHR 692 Query: 725 SVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMA 784 F G NG A +A +++ + +FA YGFN+SH+ +Y L+SY ++KAHYP F A Sbjct: 693 EAFVAGCVANGYPAPMAEELYRQIVRFADYGFNRSHAVSYTLLSYALAYIKAHYPLCFYA 752 Query: 785 AVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEG 844 +++ + EK+V E R G+ +LPP +N Y F V + I G+ +K VG Sbjct: 753 VMLSNASGDREKMVLYSYEAARKGIALLPPSVNRSGYRFAVEGE-AIRAGLATVKHVG-S 810 Query: 845 PIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGD 904 + II+ R + G F + FD R K L R LE LI +GAFD LG R +L+ S+ Sbjct: 811 AAKLIIDERKENGPFADFFDFAVRLLPKGLARSALEALISAGAFDELGEERGSLLASIEI 870 Query: 905 ALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGH 964 A++ G + + YA P E+E LG +T H Sbjct: 871 AIEHVQLMRPYLEAGGLSL-----------KPKYADAPPLSPAERRQREKELLGFAVTPH 919 Query: 965 PINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSG 1024 P + + + V V ++ G + G + R TK G + T+ D SG Sbjct: 920 P-AAVCRPLFQAVRAVPAAEV----HGSPVVVGGCIAELRKTRTKFGEEMAFITVSDESG 974 Query: 1025 RLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGL 1084 LE + F + LE+ ++++G V D +G ++ R + + Sbjct: 975 ELEAVAFPSVYARAAGELEEGNFVLLAGTV--DMRAGRRQLVLRRAERLPTS-------- 1024 Query: 1085 AISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLN 1144 A+ + D L+ L+ LE HR G+ PV+LY R+ LR + V+ + L++ Sbjct: 1025 ALYIHASLADRSRLSALKLLLEQHR-GSTPVYLY--DETKRSLLRLPERYGVALTAPLID 1081 Query: 1145 DLRGLIGSEQVELE 1158 +L L G+ ++ ++ Sbjct: 1082 ELIALFGARRLAVK 1095 >UniRef50_B2RGQ8 DNA polymerase III alpha subunit n=2 Tax=Porphyromonas gingivalis RepID=B2RGQ8_PORG3 Length = 1228 Score = 1120 bits (2897), Expect = 0.0, Method: Composition-based stats. Identities = 415/1243 (33%), Positives = 634/1243 (51%), Gaps = 122/1243 (9%) Query: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG-- 61 FVHL VHS +S++DG A LV KA A GMP +A+TD + G+ +FY Sbjct: 2 EPFVHLHVHSQFSLLDGQAAINDLVDKAIADGMPGIALTDHGAMFGIKEFYNYVEKKNSG 61 Query: 62 ----------------------------------------------IKPIVGADFNVQCD 75 KPI+G + Sbjct: 62 HNATLKDCRRELDQLNDSKSADMLTDEERNRIVKLQQKIEETKKLLFKPILGCEAYCARR 121 Query: 76 LLGDE-----------------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDR 118 D+ HL +LA N GY+NL ++S ++ G P IDR Sbjct: 122 TRFDKDNQIPDPYHPRRSIDASGWHLILLAKNLRGYKNLIKMVSYSWTEGQ-YYRPRIDR 180 Query: 119 DWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGR--- 175 + L + +EG+I+ S G++ + ++ G A +E + +++E F D Y+LE+ R Sbjct: 181 ELLQKYHEGIIVSSACLGGEIPQHIMAGEIAKAEEAILWFKELFGDDYYLEVQRHETHNP 240 Query: 176 -------PDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228 P ++ +EL + G+ V+ATNDV F + D +AH+ + + G LDDP Sbjct: 241 LGNQDVFPQQQRVNRVILELGKKLGVKVIATNDVHFCNEEDAEAHDRLICLSTGKDLDDP 300 Query: 229 KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-- 286 R R Y+ Q++M++ EM +F D+PE L+NT+EI + + +P FP Sbjct: 301 NRMR-YTKQEWMKTTAEMSAIFEDLPETLSNTLEILDKVEFYSIDNKALMPDFPIPPEYK 359 Query: 287 STEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVME 346 +DYL EG + D E ER++ EL+ I MGFPGYFLIV + Sbjct: 360 DDDDYLRFLTYEGARRKYGEDLSD---------EIKERIDFELETIKGMGFPGYFLIVQD 410 Query: 347 FIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 406 FI ++ GV VGPGRGS AGS VAY L ITD+DP+++ LLFERFLNP+R+SMPD DVDF Sbjct: 411 FIAAARSMGVSVGPGRGSAAGSAVAYCLGITDIDPIKYHLLFERFLNPDRISMPDIDVDF 470 Query: 407 CMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL---- 462 + R +++ V + YG++ V+ IIT+GTMA K+ I+DV RV P +R++KL Sbjct: 471 DDDGRAEILRWVTEKYGKERVAHIITYGTMATKSSIKDVARVQRLPLPESNRLAKLVPDK 530 Query: 463 IPPDPGMTLAKAFEAEPQLPEI-YEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTK 521 IP + + L KA E P+L + +D+ ++ + A+ LEG RN G HA G++I T Sbjct: 531 IPGEKKVNLKKAIEFVPELKQASLSSDKVMRDTLKYAQMLEGNVRNTGVHACGIIIGKTD 590 Query: 522 ITDFAPLY----CDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRA 577 I+D P+ D + + VTQ++ S +E GL+K DFLGL+TL+II AL I +R Sbjct: 591 ISDVVPVSTAPDKDTKEELLVTQYEGSVIEQTGLIKMDFLGLKTLSIIKEALVNIKRRHG 650 Query: 578 KNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVAL 637 + L+I IPLDD ++ + T FQ ES GM+ ++ LQP FED+IA+ AL Sbjct: 651 ID----LNIDTIPLDDPLTYKLYSDGRTIGTFQFESGGMQKYLRELQPSAFEDLIAMNAL 706 Query: 638 FRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVL 697 +RPGP+ + +FI RKHGRE I Y ++ L+ TYG+ +YQEQVM +++ L Sbjct: 707 YRPGPMD--YIPSFIARKHGREPIDYDL-----PEMEEYLKETYGVTVYQEQVMLLSRKL 759 Query: 698 SGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFN 757 +G+T G +D LR+AMGKK E+M + F EG KNG E+ KI+ EKFA Y FN Sbjct: 760 AGFTRGQSDELRKAMGKKLIEKMNVLKVKFLEGGNKNGHPEEVLEKIWTDWEKFASYAFN 819 Query: 758 KSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDIN 817 KSH+ Y+ V+YQT +LKA+YPAE+MA ++ +++N ++ L+DEC M + +L PD+N Sbjct: 820 KSHATCYSWVAYQTAYLKANYPAEYMAGALSRNLNNITEITKLMDECKSMKIGVLVPDVN 879 Query: 818 SGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRR 877 F VN +G+I +G+ A+KGVG G +E II R G ++++FD R + NR+ Sbjct: 880 ESEMKFSVNANGDIRFGLSAVKGVGSGAVEQIIAEREANGLYKDIFDFVERINLSACNRK 939 Query: 878 VLEKLIMSGAFDRLGPHRAALMN---------SLGDALKAADQHAKAEAIGQADMFGVLA 928 +E L ++GAFD R M + ++ + + +FG Sbjct: 940 TMESLALAGAFDSFALSREEYMAPPLTGREESYIQALMRYGSVVQEEKHSQSNSLFGEEE 999 Query: 929 EEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPT 988 + Q +PW + L+ ERE +GLYL+ +P+ QY ++ Y P Sbjct: 1000 DLMIPRPQPSP-TEPWNDLERLNKERELVGLYLSSNPMAQYQVILDHYCNTHAADLTDPD 1058 Query: 989 E-RGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRI 1047 GK + AG+V A +++ N TL+D SG E+ LF A + ++ Sbjct: 1059 SLVGKNLVLAGIVTKAFQGISRSNNPYSKITLEDLSGTGEIPLFGQAHVNFGNYCKEGLY 1118 Query: 1048 LIVSGQVSFDDF-SGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLE 1106 L++ V + G +++ + + + + + + I L +ID++L+ L L Sbjct: 1119 LLIRASVQPHKWKEGEMELVVTSIELLPQVADTLIKKMTILLPASKIDNELIEMLSDELT 1178 Query: 1107 PHRSGTIPVHLYYQRADARARLRFGATWR-VSPSDRLLNDLRG 1148 + SG + + + + S L+N L+ Sbjct: 1179 NN-SGKTMLFIKVYDHTETFDVELAQQKSLIKVSPELVNRLKT 1220 >UniRef50_B4CWT5 DNA polymerase III, alpha subunit n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CWT5_9BACT Length = 1219 Score = 1117 bits (2889), Expect = 0.0, Method: Composition-based stats. Identities = 434/1247 (34%), Positives = 654/1247 (52%), Gaps = 135/1247 (10%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS FVHL H++YS +DG + +KKA GMPALAITD NL G ++FY AG + Sbjct: 1 MSADSFVHLHCHTEYSTLDGAVRIKEAMKKAKEYGMPALAITDHGNLFGAIEFYQAGKSS 60 Query: 61 GIKPIVGADFNVQCDL--------LGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAA 112 G+ PI+G + V D + HLT+LA N+ GY+NL L+S A+ G Sbjct: 61 GVNPIIGCEVYVAPDSHLKKTATTQRESAFHLTLLAQNDQGYRNLVKLVSIAHLDGM-YY 119 Query: 113 GPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELI 171 P ID++ L + +GLI LSG G++ ++++ N E Y + P+ +F+EL Sbjct: 120 KPRIDKELLAQYGKGLIGLSGCLKGEINQAIIEDNLPKAKELTGAYRDILGPENFFIELH 179 Query: 172 RTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRP 231 G + LA+ GL +VA NDV F+ +D AH+ + I G + D +R Sbjct: 180 NHGIEAQLKCNKTLPVLAKEFGLGLVAANDVHFLQRTDHAAHDALICIGTGSNIADERRM 239 Query: 232 RNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDY 291 +Y + Y +S EM LFA++PEA NT+ IA+RCN+T+ + P + +Y Sbjct: 240 -HYVQEVYFKSPAEMRALFAEVPEACDNTLAIAERCNITIDTSPKYPNYTPPPGRTQNEY 298 Query: 292 LVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWS 351 L + G+ R +R E E+ V+ + GF YFLIV +FI W+ Sbjct: 299 LREITLAGMHRRYGSD--------ADSEIVQKRFELEISVLEKQGFTNYFLIVWDFINWA 350 Query: 352 KDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKR 411 K++G+PVGPGRGS AGS++AYA+ ITD+DP++F LLFERFLNPERVS PD DVDFC+ +R Sbjct: 351 KEHGIPVGPGRGSAAGSMIAYAMGITDIDPIKFKLLFERFLNPERVSPPDIDVDFCVNRR 410 Query: 412 DQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL 471 +VI++V YG AVSQIITFGT+ AK+V+RDV RV G YG DR++K+IP + G+TL Sbjct: 411 GEVIDYVRQKYGERAVSQIITFGTLGAKSVLRDVARVQGWSYGDADRVAKMIPNELGITL 470 Query: 472 ----------------AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGV 515 A A + P+L + + + L D+A KLEG+TR G HA GV Sbjct: 471 KGLDKKNKETGQMDHIAGAIDKNPELKKAVDTEPATAQLWDVATKLEGLTRGVGVHAAGV 530 Query: 516 VIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKR 575 VI ++D+ PL + V+Q+ + G++K DFLGL+TLT+I A+ +I R Sbjct: 531 VIGDRDLSDYIPLTRAND-NSIVSQYAMGPLTDVGMLKCDFLGLKTLTVITDAVVLIRHR 589 Query: 576 RAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALV 635 EP D+ IPL+++ +FD+L R ET +FQLES GM + ++ ED+ A++ Sbjct: 590 -----EPDFDVDKIPLENQPTFDLLNRGETIGIFQLESGGMVSVCRQFDIKDIEDINAIL 644 Query: 636 ALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQ 695 AL+RPGP+ ++ ++I RK G+ ++ P H+ L + + TYG+++YQEQVMQ AQ Sbjct: 645 ALYRPGPMD--LIPDYIKRKKGKAKVKAP-----HKLLLDMTKETYGVLVYQEQVMQAAQ 697 Query: 696 VLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEK-NGINAELAMKIFDLVEKFAGY 754 +L+GYTLGGAD+LRRAMGKK E+MAK+R F EG + + I + A +IFD +EKFAGY Sbjct: 698 ILAGYTLGGADLLRRAMGKKDKEKMAKERIKFCEGCKNLHNIEEKTANEIFDTLEKFAGY 757 Query: 755 GFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPP 814 GFN+SHSAAYA +SYQT +LKA+YP EFMAAVM+ ++ NT+K+ V EC RMG+ ILPP Sbjct: 758 GFNRSHSAAYAWISYQTAYLKANYPVEFMAAVMSNEVSNTDKISIFVGECERMGMTILPP 817 Query: 815 DINSGLYHFHVNDDGE--IVYGIGAIKGV---------GEGPIEAIIEARNKGGYFRELF 863 D+N F + I A + + GE E+I E F +L Sbjct: 818 DVNKSGLKFTPEEVNVEGIAAAQAARRKLQVAAQATEQGEDAPESIEEE---NVRFEDLP 874 Query: 864 D-----------------------------LCARTDTKKLNRRVLEKLIMSGAFDRLGP- 893 + ++E+ GAF L Sbjct: 875 SGPGTNGSAGAETPASDEKIHVGSIRYGLAAIKNVGEAAVAAAIVERNNK-GAFQSLEDF 933 Query: 894 ---------HRAAL----------MNSLGDA---------LKAADQHAKAEAIGQADMFG 925 ++ AL + A L AA + A+GQ MF Sbjct: 934 CGRVDVKKMNKKALECLVKCGAFDWTGVERAQLHSEIDGALAAASSANRDRAVGQFSMFD 993 Query: 926 VLA---EEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRL 982 + + + S PW L E+E LG Y+TGHP+++Y +E++ V + Sbjct: 994 DFEISGKATKTTKGSAPKVAPWSSTEKLAYEKELLGFYVTGHPLDEYRSALEKF---VPI 1050 Query: 983 KDMHPTERGKVITAAGLVVAARVMVTKR-GNRIGICTLDDRSGRLEVMLFTDALDKYQQL 1041 + E +T G + + TK+ + L+D + LEVM++ + +K Q L Sbjct: 1051 AKLSEEEDKSTVTIGGALASVEKKFTKKDNKPFAVVVLEDVTASLEVMIWNETFNKSQAL 1110 Query: 1042 LEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRL 1101 L + ++ ++G++ + ++ A E+ + + + + + + + L+ + Sbjct: 1111 LVQGSVVSITGRLDLRE--EAPRLVANELKLVKKPAPT-EKPVVLYFHASKTTEGDLSTV 1167 Query: 1102 RQSLEPHRSGTIPVHLYYQRADARARLRF--GATWRVSPSDRLLNDL 1146 ++ G + L + D R +R G ++V+ +D + +L Sbjct: 1168 LGVVQRF-PGPRRLELRFTDGDGRTLVRMAAGNEFKVAWNDAVSKEL 1213 >UniRef50_A6LHM2 DNA polymerase III alpha subunit n=46 Tax=Bacteroidales RepID=A6LHM2_PARD8 Length = 1267 Score = 1117 bits (2889), Expect = 0.0, Method: Composition-based stats. Identities = 412/1284 (32%), Positives = 653/1284 (50%), Gaps = 146/1284 (11%) Query: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGA------- 56 F+HL VH+ YS++DG A L+ KA GM A+A+TD + G+ +F+ Sbjct: 2 EPFIHLHVHTQYSLLDGQASIDALIDKAYKDGMRAIAVTDHGVMFGIKEFFNKVSKKNSK 61 Query: 57 --------------------------------------GHGAGIKPIVGADFNVQCDLLG 78 + KPI+G + + Sbjct: 62 PLGIIKDSEKELKPLLAKDAPTDEEQQRITELQKQIAEAKASIFKPIIGCECYCARNGRH 121 Query: 79 DEL--------THLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEGLIL 130 +L HL VLA N GY+NL ++S ++ G+ P ID++ L + +E LI+ Sbjct: 122 SKLASQDDRSGWHLIVLAKNKNGYKNLIKMVSLSWTEGF-YGRPRIDKELLEKYHEDLII 180 Query: 131 LSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGR----------PDEES 180 S G++ + ++ G +E + +++ F + Y+LE+ R P ++ Sbjct: 181 CSACLGGEIPQHIMHGRIDKAEESIKWFKNLFGEDYYLEMQRHETHDPNADCTIFPHQQE 240 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 +ELA + ++ATNDV F+++ D +AH+ + + G LDDPKR R YS Q++M Sbjct: 241 VNKVLIELAHKHNIKLIATNDVHFVNADDAEAHDRLICLSTGKDLDDPKRMR-YSKQEWM 299 Query: 241 RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF--PTGDMSTEDYLVKRAKE 298 ++ EM +FADIPEAL+NT+EIA + +P F P + E Y K + Sbjct: 300 KTTAEMNTIFADIPEALSNTLEIADKIEFYSIDSGPIMPTFAIPEEFGTEESYRQKLTEH 359 Query: 299 GLEER--------------------------------------LAFLFPDEEERLKRRP- 319 L E LA L D + L P Sbjct: 360 DLFEEFTRDENGNVVLSEEEAHSKIKKLGGYDKLYRIKLEADYLAKLTYDGAKELYGDPL 419 Query: 320 --EYDERLETELQVINQMGFPGYFLIVMEFIQWSKDN-GVPVGPGRGSGAGSLVAYALKI 376 E ERL EL ++ MGFPGYFLIV +FI+ +++ GV VGPGRGS AGS VAY L I Sbjct: 420 NDEVKERLNFELHIMKTMGFPGYFLIVQDFIRAAREELGVSVGPGRGSAAGSAVAYCLGI 479 Query: 377 TDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTM 436 T +DP+++DLLFERFLNP+R+S+PD D DF + R +V+ V + YG + V+ IIT+GTM Sbjct: 480 TKIDPIKYDLLFERFLNPDRISLPDIDTDFDDDGRGEVLRWVTEKYGAERVAHIITYGTM 539 Query: 437 AAKAVIRDVGRVLGHPYGFVDRISKL----IPPDPGMTLAKAFEAEPQLPEIYE-ADEEV 491 A K+ I+DV RV P +R++KL IP L A + P+L E D Sbjct: 540 ATKSAIKDVARVQKLPLSESNRLAKLVPDKIPDMKKFKLGDAIKYVPELKEAANGNDPLA 599 Query: 492 KALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLY----CDEEGKHPVTQFDKSDVE 547 + + A+ LEG RN G HA GV+I I+D P+ D + VTQ++ S +E Sbjct: 600 RDTLKYAQMLEGNVRNTGVHACGVIIGRYDISDVVPVSTAKDKDTGEEMLVTQYEGSVIE 659 Query: 548 YAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTA 607 GL+K DFLGL+TL+II A+E + + LDI I L+D K++ + +TT Sbjct: 660 ETGLIKMDFLGLKTLSIIKEAIENVKLTTGHD----LDIDHISLEDPKTYKLYCDGKTTG 715 Query: 608 VFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQ 667 FQ ES GM+ +K LQP FED+IA+ AL+RPGP+ + +FI RK G+EEI Y Sbjct: 716 TFQFESAGMQKYLKELQPSKFEDLIAMNALYRPGPMD--YIPSFIARKQGKEEIKY---- 769 Query: 668 WQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVF 727 ++ L+ TYGI +YQEQVM ++++L+ +T G +D LR+AMGKK E+M +S F Sbjct: 770 -DIPVMERYLKDTYGITVYQEQVMLLSRLLANFTRGESDALRKAMGKKLIEKMNHLKSKF 828 Query: 728 AEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVM 787 G + NG E KI+ EKFA Y FNKSH+ Y+ V+YQT +LKA++P+E+MAAV+ Sbjct: 829 MAGGQANGYKEETLNKIWSDWEKFASYAFNKSHATCYSWVAYQTAYLKANFPSEYMAAVL 888 Query: 788 TADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIE 847 + + N + +DEC MG+++L PD+N + F V+ + I +G+GA+KGVGE ++ Sbjct: 889 SRSLSNITDITKFMDECKAMGIQVLGPDVNESILKFSVDKNKNIRFGLGAVKGVGESAVQ 948 Query: 848 AIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNS------ 901 IIE R K G ++ +FD R + N++ +E + ++GAFD G R Sbjct: 949 NIIEERKKNGPYKSIFDFVERVNLTACNKKNIESMALAGAFDNFGIQREQFFTDSGKGEL 1008 Query: 902 -LGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLY 960 L ++ +++ ++ +FG A + C+ W + L+ E+E +G+Y Sbjct: 1009 FLDTLVRYGNKYQMDKSTAVNSLFGGDA-LIAIAKPEIPQCERWSDLERLNKEKELVGIY 1067 Query: 961 LTGHPINQYLKEIERYVGGVRLKDMHPTE--RGKVITAAGLVVAARVMVTKRGNRIGICT 1018 L+ HP+++Y I +YV + +++ E +G+ + G+V R +TK G GI Sbjct: 1068 LSAHPLDEYR-IILKYVCNTGMVELNERETLQGREVLLGGIVTGFREGMTKNGKPYGILK 1126 Query: 1019 LDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFS-GGLKMTAREVMDIDEAR 1077 ++D +G E+ LF +Y + + L+++ +V + L V + + + Sbjct: 1127 IEDFTGSGEIPLFGQDYIEYSKYGKIGMYLLITARVEPSRWDPNKLDFKIGTVNLLQDEK 1186 Query: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRF-GATWRV 1136 +K ++I++ +D+ +N L L + G ++ + L R+ Sbjct: 1187 DKLIEKISITVPIHDLDEPTINELS-VLIKNNPGHSLLYFKVVDGEHNISLNLFSQNIRL 1245 Query: 1137 SPSDRLLNDLRGLIGSEQVELEFD 1160 + + L++ L+ +E ++ + + Sbjct: 1246 NVTRELVDFLQE---NENIDFKIN 1266 >UniRef50_Q9ZJF9 DNA polymerase III subunit alpha n=51 Tax=cellular organisms RepID=DPO3A_HELPJ Length = 1211 Score = 1116 bits (2886), Expect = 0.0, Method: Composition-based stats. Identities = 443/1210 (36%), Positives = 685/1210 (56%), Gaps = 102/1210 (8%) Query: 1 MSEPR-FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59 M E + F HL +H++YS++DG K L K+ LGM ++++TD N+ G + FY + Sbjct: 1 MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60 Query: 60 AGIKPIVGADFNVQCDL-----LGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGP 114 GIKPI+G + + D + HL + A N GY+NL L S AY G+ P Sbjct: 61 EGIKPIIGMEAYIHNDDNLSSKETKQRFHLCLFAKNQEGYENLMFLSSMAYLEGF-YYFP 119 Query: 115 IIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNS----------ALVDECVAFYEEHFPD 164 I++ L E ++G+I S G+V L N Y+E F D Sbjct: 120 RINKKLLREHSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKRIACEYQEIFED 179 Query: 165 RYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFT 224 ++LE++R G D+ ++++ GL ++ATND + +D A E+ + + G T Sbjct: 180 DFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMCVAMGKT 239 Query: 225 LDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLP 279 L+D R ++ + Y++S EEM +LFADIPEAL NT EIA +C + + L + P Sbjct: 240 LNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKKNPPTPP 299 Query: 280 QFP----------TGDMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETEL 329 F Y +A+EGL ERL L P+E+ +Y ERLE E+ Sbjct: 300 SFKFTKAYAQNEGLSFEDDASYFAHKAREGLRERL-ILVPEEKHE-----QYKERLEKEI 353 Query: 330 QVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFE 389 +VI M FPGY LIV +FI+++K+ G+PVGPGRGS AGSLVA+ALKITD+DPL++DLLFE Sbjct: 354 EVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDLLFE 413 Query: 390 RFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVL 449 RFLNPERVSMPD D DFC +R ++IE++ + YG+ V+Q+ITF M AK VIRDV RVL Sbjct: 414 RFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVARVL 473 Query: 450 GHPYGFVDRISKLIPPDPGMTL----------AKAFEAEPQLPEIYEADEEVKALIDMAR 499 PY D +KLIP G+TL A+E EP++ E+ E++E K + + + Sbjct: 474 DMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNEVAKQVWEYSL 533 Query: 500 KLEGVTRNAGKHAGGVVI-APTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLG 558 LE + RNAG HA +V+ + ++ PL+ E+ VTQ+ +E L+KFDFLG Sbjct: 534 NLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFDFLG 593 Query: 559 LRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKD 618 L+TLT+I+ AL++I + +D ++ +DD K + +Q +T +FQ+ES + Sbjct: 594 LKTLTVIDDALKIIKTQH----NIDVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQG 649 Query: 619 LIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLE 678 L KRL+P FED+IA++AL RPGP++SGMVD+F++RKHG E I+Y + L+P+L+ Sbjct: 650 LNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGVEPIAYA-----FKELEPILK 704 Query: 679 PTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINA 738 PTYG I+YQEQVMQI Q + G++LG AD++RRAMGKK + MA ++ F EGA+ G + Sbjct: 705 PTYGTIVYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDG 764 Query: 739 ELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVV 798 + A ++DL+ KFAGYGFNKSHSAAYA++++QT +LK +Y EFMAA++T++ + E V Sbjct: 765 QKAANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVA 824 Query: 799 GLVDECWRMGLKILPPDINSGLYHFHVND--------DGEIVYGIGAIKGVGEGPIEAII 850 +DE + ++++PP INS + F V + + +IV+G+GA+KGVG PI+ II Sbjct: 825 RYIDEVRALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAVKGVGGEPIKNII 884 Query: 851 EARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKA-- 908 E R K G ++ L D +R D KL ++ LE L+ SG+ D LG R ++ +L A Sbjct: 885 EERAK-GDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGR 943 Query: 909 ADQHAKAEAIGQADMFGVLAEE-PEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPIN 967 A A G +FG + EQ+ + +L+ E ETLG++++G+P++ Sbjct: 944 AKDKANEMMQGGNSLFGAMEGGIKEQVVLDMVDLGEHDAKTLLECEYETLGIHVSGNPLD 1003 Query: 968 QYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKR-GNRIGICTLDDRSGRL 1026 ++ +EI+ + V+ D+ E G G ++ + + KR G G + DR G+ Sbjct: 1004 EFKEEIKGFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKF 1063 Query: 1027 EVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAI 1086 E+MLF L+ ++ L+ ++ L+ ++ + L++ E++D++ ARE Sbjct: 1064 ELMLFEKQLNALEE-LDINKPLVFKCKIEEQEEVARLRLF--EILDLESAREVKIPKARY 1120 Query: 1087 S---------------------------LTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYY 1119 + + + + L ++++S H+ G P++L Sbjct: 1121 KDPEKQKEDVREIPPMEMLASSSCSLAIVLENDVKKEFLRQIKESALKHQ-GKRPLYLII 1179 Query: 1120 QRADARARLR 1129 + D + +++ Sbjct: 1180 KDKDKQFKIQ 1189 >UniRef50_C0QYZ2 DNA polymerase III, alpha subunit n=2 Tax=Brachyspira RepID=C0QYZ2_BRAHW Length = 1236 Score = 1112 bits (2877), Expect = 0.0, Method: Composition-based stats. Identities = 383/1108 (34%), Positives = 617/1108 (55%), Gaps = 49/1108 (4%) Query: 6 FVHLRVHSDYSMIDGLAKTAPL--------------VKKAAALGMPALAITDFTNLCGLV 51 FVHL VH+ YS++DG A+ L + +A LGMP +A+TD N+ G + Sbjct: 3 FVHLHVHTQYSILDGAARIKSLYSKKDKTKRLIPGLIDRAKELGMPGIAMTDHGNMFGAM 62 Query: 52 KFYGAGHGAGIKPIVGADFNVQCDLLGDELT---------HLTVLAANNTGYQNLTLLIS 102 +F+ GI PI+G + V D+ HL +LA + GY NL L++ Sbjct: 63 EFFSEAKDKGIIPIIGCEVYVAPKTRFDKKIENSEEKSAMHLILLAKDKEGYNNLCKLVT 122 Query: 103 KAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF 162 Y G+ P +D + + + N+GLI LS G++ ++ + + + +Y+ F Sbjct: 123 FGYTEGF-YYRPRVDHELIEKYNKGLICLSACMGGEIPIAIRKKDYKQASKLAEYYKSIF 181 Query: 163 PDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDG 222 + +++EL P+E++ A +LA+ + +V TNDV ++ D AHEI +AI Sbjct: 182 GNDFYIELQDHNIPEEKALNSALYQLAKHHNIELVVTNDVHYVSKEDAKAHEILLAIQTK 241 Query: 223 FTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRC-NVTVRLGEYFLPQF 281 TLD P+R + S + ++++EEEM + FA +P+A NTV+IA++C ++ + Y++P + Sbjct: 242 ATLDSPRRYKFPSNEFHLKTEEEMMKSFAKLPKAFENTVKIAEQCQDLNIMTKTYYMPNY 301 Query: 282 PTGDMSTEDY-LVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGY 340 + TE L +GL + P E +RLE EL VI +MGF GY Sbjct: 302 ELPNGETETTALRNMCMDGLNKYYNNNIP---------KEAMDRLEMELGVIGKMGFEGY 352 Query: 341 FLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMP 400 FL+V +FI +++++ V VGPGRGS AGS+VA+A IT ++PL+++LLFERFLNPER SMP Sbjct: 353 FLVVQDFINYARNHDVAVGPGRGSAAGSIVAFATGITKVNPLDYNLLFERFLNPERKSMP 412 Query: 401 DFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIS 460 D DVDF +KR+ +I++V + YG+D VSQI TFG + ++VIRDV RV+G DR++ Sbjct: 413 DIDVDFQDDKREVIIDYVKEKYGKDNVSQIATFGALGGRSVIRDVCRVMGIDLATADRLA 472 Query: 461 KLIPPDPGMTLAKAFEAE-PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAP 519 K IP D + + L + E + E+K + +++ +L+G+ RN G HA GV+I+ Sbjct: 473 KSIPDDVKRVVDIYDHPDCAALVKEIEGNRELKNMYEISTRLDGLVRNVGLHAAGVIISS 532 Query: 520 TKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKN 579 I D AP+Y D + Q++ + VE AGL+K DFLG++ L +I A++ I R Sbjct: 533 HPIMDLAPVYQDSKTGTRACQYEMTYVESAGLIKMDFLGIKNLRLIKDAIKDIKDRYGIE 592 Query: 580 GEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFR 639 +DI IPLDD+ +D+ ++++T VFQ ES GM+ ++ +QP F+D+++ VAL+R Sbjct: 593 ----IDIDKIPLDDEAVYDIFRKADTGGVFQFESPGMRQMLINIQPTGFDDLVSSVALYR 648 Query: 640 PGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSG 699 PGPL SGM ++ DRK+ R+EI Y +H L+P+L+ + G+++YQEQ+M I++V+ G Sbjct: 649 PGPLNSGMDKDYADRKNKRKEIVY-----KHPDLEPILKESQGVLIYQEQIMAISRVIGG 703 Query: 700 YTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKS 759 +T AD LR+AMGKK E+M F +G + G + EL +FD ++ FA YGFNKS Sbjct: 704 FTAAEADDLRKAMGKKIVEKMNSMEEKFIKGGLERGYDKELLTYLFDTMKGFAEYGFNKS 763 Query: 760 HSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSG 819 HS YAL++YQ ++KAHYP E+ A++ + +T+K+ ++E + ++I+ + Sbjct: 764 HSVCYALIAYQEAYIKAHYPMEYYVALLNTVIADTDKISLYLNEIKQKNIEIVTASVFES 823 Query: 820 LYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVL 879 F DG+IVY + A+KGVG AI E R K G F+ L D R D +NR+V Sbjct: 824 DALFS-QKDGKIVYALHAVKGVGIHAALAIQEEREKNGQFKNLEDFVKRVDVHLVNRKVY 882 Query: 880 EKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYA 939 E LI GAF G +AL++SL L A + K GQ +F ++E+ Sbjct: 883 ETLIKCGAFSEFGHTESALLSSLDAILAHASNYQKETLSGQTMLFDSMSEDDSGSASLVI 942 Query: 940 SCQ-PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998 Q + ++++ E+E LG L HP +Y+ +I+ L D+ + Sbjct: 943 EKQVEYASNILMENEKEVLGFSLRYHPFARYITKIDYKYFHNTL-DIDNLKDKDEFLLPC 1001 Query: 999 LVVAARVMVTKRGNRIGICTLDD-RSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFD 1057 +V++A TK+ + + D + + + ++KY+ +LE+ +++ G+ + Sbjct: 1002 VVMSASETTTKKNTPMITLKVIDIFTEYVFYITANSQIEKYKDMLEEQTGILIKGRRDKN 1061 Query: 1058 DFSGGLKMTAREVMDIDEAREKYARGLA 1085 FS + ++ +D + L Sbjct: 1062 RFSDKIYNNIVDIKLLDSFLKDKNLKLK 1089 >UniRef50_Q83I40 DNA polymerase III alpha subunit n=2 Tax=Tropheryma whipplei RepID=Q83I40_TROW8 Length = 1164 Score = 1112 bits (2876), Expect = 0.0, Method: Composition-based stats. Identities = 415/1190 (34%), Positives = 646/1190 (54%), Gaps = 65/1190 (5%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS FVHL VH+DYSM+DG A+T L++KAA MPA+AITD N G F+ Sbjct: 5 MS---FVHLHVHTDYSMLDGAARTEDLMRKAAEDKMPAIAITDHGNTFGAFDFWKTAKTY 61 Query: 61 GIKPIVGADFNVQCDLLGDE-------------------LTHLTVLAANNTGYQNLTLLI 101 I PI+G + + E THLT+L+ NN G NL L Sbjct: 62 DINPIIGMEAYLTPGTNRKEKVRKFFASGGPDDVSAGGAYTHLTLLSQNNEGMHNLFKLS 121 Query: 102 SKAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEH 161 S A GY P ID + L + + GLI +G G++ L G + + A + Sbjct: 122 SLASIEGY-YFKPRIDIELLNQYSNGLIATTGCPSGEIQTRLRLGQYSEARQAAAQMRDI 180 Query: 162 F-PDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIH 220 F P+ Y+ E++ E++ + + LA GLP++ATND+ +++S D +H + + Sbjct: 181 FGPENYYCEVMDHNLEIEKAVMPDLLRLAGDLGLPLLATNDLHYVNSEDSASHAALLCVQ 240 Query: 221 DGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQ 280 G T++DP R + S + Y++S EM LF D+PEA NT+ +A+RC++ F+P+ Sbjct: 241 SGSTINDPNRFKFDSDEFYLKSSSEMRILFEDLPEACDNTLLVAERCHINFDTQRSFMPR 300 Query: 281 FPTGDMSTE-DYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPG 339 F + TE + K G+ R E+ E E++V+ + G+ G Sbjct: 301 FSVPEGETENSWFASEVKRGIASRYPNGPSRR---------VIEQAEYEIRVVQEAGYAG 351 Query: 340 YFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSM 399 YFLIV +FI W+K NG+ VGPGRGSGA S+ AYA++ITDLDPLE L+FERFLNP R+SM Sbjct: 352 YFLIVADFINWAKLNGIRVGPGRGSGAASMAAYAMRITDLDPLEHGLIFERFLNPARISM 411 Query: 400 PDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRI 459 PDFD+DF +R +VI++V YG D V+QI+TF T+ AK ++D RVL +PY F +R+ Sbjct: 412 PDFDIDFDERRRGEVIDYVTKKYGSDHVAQIVTFATIKAKQALKDSARVLSYPYSFGERL 471 Query: 460 SKLIPP---DPGMTLAKAFE-------AEPQLPEIYEADEEVKALIDMARKLEGVTRNAG 509 +K +PP + L F+ ++ ++ E+D E++ + + A+ LE + R Sbjct: 472 TKAMPPAVMGREIPLRAIFDTTHSRHREASEVRQMIESDYEMQQIFNTAKGLENLKRQWA 531 Query: 510 KHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWAL 569 HA GV+++ I D P+ E H VTQFD + E GLVK DFLGLR LTII+ AL Sbjct: 532 VHAAGVIMSDAPIIDIIPIMKRESDGHIVTQFDYASCESLGLVKMDFLGLRNLTIIDDAL 591 Query: 570 EMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFE 629 I + N +D+ +PLDD + + +L+R++T VFQL+S ++ L++ +QPD F+ Sbjct: 592 ANIRQ----NKNTKVDLENLPLDDPEVYKLLRRADTLGVFQLDSGPIRQLLELMQPDSFD 647 Query: 630 DMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQ 689 D+ A +AL+RPGP+ + N+ RK+ ++EI + + + L +L TYG+I+YQEQ Sbjct: 648 DISAAIALYRPGPMGARSHTNYALRKNRKQEIDHIHPE-LTKDLSVLLSSTYGLIVYQEQ 706 Query: 690 VMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVE 749 V+ IAQ L+G+TL AD+LR AMGKKK +E+ +Q + FA G K G + +++++ Sbjct: 707 VIGIAQKLAGFTLEEADVLRWAMGKKKKDELDRQYNKFANGMRKAGYSDGATEALWNVLL 766 Query: 750 KFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGL 809 F+ Y FNK+H+ AY L+SY T +LKAHYP E+MAA++T+ + +K+ + EC M + Sbjct: 767 PFSDYAFNKAHATAYGLISYWTAYLKAHYPTEYMAALLTSVETSRDKLGLYLQECRHMCI 826 Query: 810 KILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCART 869 K+L PDIN F + + I++G+GAIK VG I+ I+E R G F L D R Sbjct: 827 KVLLPDINVSRSGFTPSGEN-ILFGLGAIKNVGANLIDDILEVRED-GPFVSLIDFVQRM 884 Query: 870 DTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAE 929 LNRR + LI +GAFD + P+R +LM+ L+ +A+ + + L + Sbjct: 885 PHSVLNRRSVMSLIQAGAFDSIHPNRRSLMDIHRSVLENCQANARRSDV---SLLDGLLD 941 Query: 930 EPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTE 989 E E W + L ERE LG+Y++ HP++ + ++ + + + Sbjct: 942 EYEGFSP--PDIPDWNNRERLKYEREMLGMYVSSHPLDGLEDSLLKFRDC-SIAECISRK 998 Query: 990 RGKVITAAGLVVAARVMVTKR-GNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRIL 1048 VI AGL+ + V +R G R L+D SG +++ML + + + L D I+ Sbjct: 999 PQDVIRVAGLITSVEHKVARRTGMRYAHAILEDTSGEIQIMLSGQNYNNFSEQLVTDSIV 1058 Query: 1049 IVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPH 1108 V+G++SF D + + D+ +++ L + ++ + + L L + Sbjct: 1059 SVTGRISFRD--DATTLYCDSIKDVLPVKKE--ARLRLKCSEGFLTQNVFIALDDVLRKY 1114 Query: 1109 RSGTIPVHLYYQRADARARLR--FGATWRVSPSDRLLNDLRGLIGSEQVE 1156 G PV + D F + V S+ L+ +++G++G E + Sbjct: 1115 -PGDTPVTMEVIITDNSVVKSKTFELSRCVEISNDLIAEVKGILGVEGIS 1163 >UniRef50_Q2GJ87 DNA polymerase III, alpha subunit n=8 Tax=Rickettsiales RepID=Q2GJ87_ANAPZ Length = 1127 Score = 1111 bits (2874), Expect = 0.0, Method: Composition-based stats. Identities = 442/1138 (38%), Positives = 652/1138 (57%), Gaps = 41/1138 (3%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHLR HSDYS+++G+ K LV MPA+A+TD NL G ++F AG++PI Sbjct: 5 FVHLRTHSDYSLLEGMIKVESLVAMCVEQKMPAVALTDSGNLFGSLEFSDCAARAGLQPI 64 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 +G + V+ G+ L ++ +LA + G+ NLT LIS + ++ D L++LN Sbjct: 65 IGCNIMVE--ESGNNLGNILLLAKSAEGFANLTNLISNGFNNSQLEKINRVNIDDLLKLN 122 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 185 GLI L+GG + R+LL L + + F D ++EL R G + Sbjct: 123 GGLIALTGGHDDILARALLNNGDDL--RALDSILQVFKDNVYVELQRHGLNGQREVEELL 180 Query: 186 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 245 + A R +P+VATNDV F DF AH+I I G + R R +P+ Y ++ E Sbjct: 181 IRFAYERNIPLVATNDVFFACRGDFQAHDILSCISTGAYVVQEDRHRL-TPEHYFKTASE 239 Query: 246 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTE-DYLVKRAKEGLEERL 304 M ELF+D+PEA+ NT IA+RC+ + + LP FP + TE + L + A GLE RL Sbjct: 240 MYELFSDVPEAVLNTSLIAQRCSFIQEVRKPQLPHFPCFEGRTEAEELTECALAGLEIRL 299 Query: 305 AFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGS 364 ++E +R Y +RL+ EL V+ M + GYFLIV +FI+WSK N + VGPGRGS Sbjct: 300 KSKGIGDDEE--QRDLYLKRLKYELGVVISMEYSGYFLIVADFIRWSKQNDIMVGPGRGS 357 Query: 365 GAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGR 424 GAGSL+A++L ITDLDP+EF L+FERFLNP+RVSMPDFD+DFC EKRD+VIE+V + YG Sbjct: 358 GAGSLIAWSLGITDLDPIEFGLIFERFLNPDRVSMPDFDIDFCQEKRDKVIEYVKEKYG- 416 Query: 425 DAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP--GMTLAKAFEAEPQLP 482 V+ IITFG + A+AV+RDVGRV+ PY +DRI K+IP DP +TL +A E + L Sbjct: 417 -YVAHIITFGKLQARAVLRDVGRVMQIPYAQIDRICKMIPHDPISPVTLLEAIEMDQNLK 475 Query: 483 EIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFD 542 E DE V LI+++ KLEG+ R+A HA G+VI + +F PLY D+ P+TQ++ Sbjct: 476 AEQENDETVAKLIEISLKLEGLYRHASVHAAGIVICDQPLENFVPLYYDKSSSLPITQYN 535 Query: 543 KSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQR 602 VE AGLVKFDFLGLRTLT+I+ +I R ++++ IPL+DKK+++ML Sbjct: 536 MKYVEKAGLVKFDFLGLRTLTMIDQICSLIRARG-----EEIELSKIPLNDKKTYEMLSA 590 Query: 603 SETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEIS 662 ++ VFQLES GM++ I +L+PD +D+IAL++L+RPGP+ + +I RKHG EE Sbjct: 591 GDSIGVFQLESAGMREAISKLRPDSIQDIIALISLYRPGPM--NNIAIYISRKHGLEEPD 648 Query: 663 YPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAK 722 Y H L+ VL+ T+G+I+YQEQVM+IA++L+GY+LG AD+LRRAMGKK EEM + Sbjct: 649 Y-----IHPMLECVLKETFGVIIYQEQVMEIARILAGYSLGEADLLRRAMGKKIKEEMDR 703 Query: 723 QRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEF 782 QR F +GA NGI A IFDLV KFAGYGFNKSH+AAYAL+S+QT +L+A+Y EF Sbjct: 704 QRQDFVDGAVSNGIEESKASYIFDLVAKFAGYGFNKSHAAAYALISFQTAYLRANYTKEF 763 Query: 783 MAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVG 842 A M D+D+ +K+ L + G+ ++PPDIN F V+ + I YG+GA+K VG Sbjct: 764 FTASMNLDIDDKDKLGLLCQQAKMCGIDVMPPDINLSSAEFTVSGN-SIRYGLGALKNVG 822 Query: 843 EGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSL 902 + I+ +GG + +++D + +R LE LI SG+ D + P+R L SL Sbjct: 823 QLTAHEILPV--EGGRYSDIWDFAGNVRIRSPLKRTLESLIKSGSLDGIHPNRRQLFASL 880 Query: 903 GDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLT 962 G L + + Q +F E+ E W E ++ E T+G YL Sbjct: 881 GIILNIIENKKVSMDAHQFSLFS------EKEEGQLEEVDDWTEDEKIEHEFATIGFYLR 934 Query: 963 GHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDR 1022 HP+++Y + + ++ G + + V AG+V + + M + R I + D Sbjct: 935 YHPLSKYEQVLGKF-GVRFVSSTQEEKESGVTKRAGVVSSVK-MRSANKERFAIVRVSDP 992 Query: 1023 SGRLEVMLFT-DALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYA 1081 G +V + +++ + L +++ D + ++ R + + E+ Sbjct: 993 HGVNDVAFYNSKTIEENRDLFNSGVPVMI----DMDYNASKGRLVGRNICNFHESISLMM 1048 Query: 1082 RGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPS 1139 R + + + + L++ L+ G V++ ++ + V+P Sbjct: 1049 RRVRSIAIHTGQNTLIAHMLQEVLKRDAMG-AEVYIELLSKGHLVLIKLPGAFLVTPE 1105 >UniRef50_D1AIM1 DNA polymerase III, alpha subunit n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AIM1_SEBTE Length = 1122 Score = 1111 bits (2873), Expect = 0.0, Method: Composition-based stats. Identities = 409/1160 (35%), Positives = 667/1160 (57%), Gaps = 40/1160 (3%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M FVHL++H++YS+++G+ K + +A L + LA+TD + G+V+FY Sbjct: 1 MMREEFVHLKLHTEYSLLEGVGKIEEYLDRAKKLDIKQLAVTDTA-MFGVVEFYEKAFKK 59 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 GIKPI+G + + + LT+LA N TGY+NL L S ++ R + + I + Sbjct: 60 GIKPIIGLEIFMDGFFS-EGEYSLTLLARNQTGYKNLCKLSSLSFSR-FNRSRNKIRYEE 117 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 180 L + +EGL +LSGG ++ S+L + + + F + +++E+ R ++ Sbjct: 118 LKKHSEGLFILSGGINSELTESILTYKYSEFKNIITKLVQDFGEYFYVEVPAAERLKDKV 177 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 L+ +E+AE VA NDV + + D +I ++I DG ++ Y+ Y+ Sbjct: 178 KLY--IEMAEECNAEYVAANDVYYPNFGDSILQKIMISIKDGTKINSENTELKYND-LYL 234 Query: 241 RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTE-DYLVKRAKEG 299 +S E+M E F+ +A+ N+++IA+ CNV+ ++ P++ + +E +Y+ + +G Sbjct: 235 KSAEQMKENFSGYEKAIENSLKIARECNVSFEFDKFKFPEYNLPEGKSETEYIRELVYDG 294 Query: 300 LEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVG 359 L+++ ++ ER E EL +IN+MG+ GYF+IV +FI+++KDNG+ VG Sbjct: 295 LKKKYGEPLEEK---------ITERAEYELDIINKMGYNGYFIIVWDFIKYAKDNGIYVG 345 Query: 360 PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVA 419 PGRGS AGS+V+YAL IT++DP++++L+FERFLNPER+SMPD D+DF E+R+QVI++V Sbjct: 346 PGRGSSAGSIVSYALNITEVDPIKYNLIFERFLNPERISMPDIDIDFDQEQREQVIDYVV 405 Query: 420 DMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEP 479 YG + V+ IITFGT+ A+A IRDVGRVL VD+++KLIP L A + Sbjct: 406 KKYGHEKVAHIITFGTLKARAAIRDVGRVLDINLKKVDKVAKLIPHF--SELEDAVKNVR 463 Query: 480 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 539 +L +Y +D EV+ +ID + KLEG R+A HA G+VI+ + D P Y D T Sbjct: 464 ELKTLYNSDSEVRDMIDYSLKLEGKVRHASVHAAGMVISKDVLDDEIPTYSDGRASFLST 523 Query: 540 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 599 Q+ ++E G++K DFLGL+ LTI+ +E I + K + + IPLDDK+++ M Sbjct: 524 QYQMKELEDLGILKMDFLGLKNLTILRKTMENIKITQGK----VMVLDDIPLDDKETYKM 579 Query: 600 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 659 L +T VFQ ES G++ L+++++ + FED++AL+AL+RPGPL+SGMVD+FI K+ Sbjct: 580 LTAGDTLGVFQCESIGIRRLMQKMKIEKFEDIVALLALYRPGPLRSGMVDDFIASKNEGA 639 Query: 660 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 719 I YP HE+L VL TYG+ILYQEQV++I VL+ YT+G D LRRAMGKK PE Sbjct: 640 AIKYP-----HEALIDVLSETYGVILYQEQVLKIVNVLANYTMGEGDSLRRAMGKKIPEL 694 Query: 720 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 779 MA+ R VF + A +N I + A +IF+L++KF+GYGF KSHS AYALV+Y T +LK +Y Sbjct: 695 MAQNREVFIKRAVENNITPDKAEEIFNLIDKFSGYGFPKSHSVAYALVAYWTAYLKTNYF 754 Query: 780 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 839 EF AA M+ +M N +++ ++E G+K+L PD+N Y F DG I +G+ AIK Sbjct: 755 KEFFAATMSTEMYNIDRLSLFINEARDKGVKVLLPDVNLSAYEFLAEKDG-IRFGLLAIK 813 Query: 840 GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 899 VG ++ +IE R K F D + LN++ LE + SG+ D++ +R + Sbjct: 814 HVGINIVKKVIEVR-KNEKFDSYEDFVYNLKKEGLNKKQLEAFVFSGSLDKIHNNRKEMF 872 Query: 900 NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 959 +S+ L+ ++ +E Q +FG +++ S + + E ++L+ E+E LG+ Sbjct: 873 SSIDRVLEWCEKKFNSEEDLQMILFGGKSQKIGL--FSMEKSEEYSESLLLEKEKEFLGV 930 Query: 960 YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKR-GNRIGICT 1018 YL+ HP++ Y K + R + R+ + GK GLV + M+TK+ G + Sbjct: 931 YLSKHPLDNY-KLLMRTIDKTRMDSLKQ---GKRARVIGLVKDIKKMITKKTGEPMARFF 986 Query: 1019 LDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEARE 1078 ++D + EV+ F Y + +IV G VS D+ SG L + + + + E Sbjct: 987 VEDYGTKAEVVCFPRDYINYSHEIFDGNAVIVEGTVSSDN-SGRLNIHMTNISSLKDIDE 1045 Query: 1079 KYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSP 1138 + L I + + + ++++ + ++ G V+ A + ++ +RVS Sbjct: 1046 NHRLKLYILIDEE--TKGQMVQVKKVITENK-GPNQVYFAVNEAGKKEIIKLSEKYRVSI 1102 Query: 1139 SDRLLNDLRGLIGSEQVELE 1158 + + + +L L ++++++ Sbjct: 1103 TAKFIEELSQLFSYKKIKIK 1122 >UniRef50_A5FKC9 DNA polymerase III, alpha subunit n=26 Tax=cellular organisms RepID=A5FKC9_FLAJ1 Length = 1510 Score = 1111 bits (2873), Expect = 0.0, Method: Composition-based stats. Identities = 408/1202 (33%), Positives = 631/1202 (52%), Gaps = 104/1202 (8%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG--- 61 +F HL H+ +S++ +V A GMPA+A+TD N+ G F A Sbjct: 260 KFAHLHNHTQFSVLQSTIGIGNIVAATAKNGMPAVAMTDTGNMMGAFHFVSAVMNHNKAA 319 Query: 62 ------------------IKPIVGADFNVQCDLLG----DELTHLTVLAANNTGYQNLTL 99 IKPIVG +FN+ + L D + +LA N GY NL Sbjct: 320 SGKNKALVEAGEEPTETEIKPIVGCEFNICENHLDKSKKDNGYQVVLLAKNKAGYHNLAK 379 Query: 100 LISKAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYE 159 + S AY G+ P ID++ + + +++LSG G++ +L +E + +++ Sbjct: 380 MASIAYTEGF-YYVPRIDKNIVEKYKGDIMVLSGNLYGEIPSKILNIGENQAEEALIWWK 438 Query: 160 EHFPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAI 219 E F + ++LE++R + DE +E ++ + ++ATN+ +++ D +AH+I + + Sbjct: 439 EQFGEDFYLEVMRHNQEDENRVNKTLIEFSQKHNVKLIATNNTYYLNKEDANAHDILLCV 498 Query: 220 HDGFTLDDP------KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRL 273 DG P R + + Y +SE EM +LFAD+PEA+ N E+ + Sbjct: 499 KDGEKQATPIGRGRGYRYGLPNQEYYFKSEAEMKKLFADLPEAIINIQEVIDKVEGYSLY 558 Query: 274 GEYFLPQFPTGDM-------------STEDYLVKRAKEGLEERLAFLFPDEEERLKRRPE 320 + LP+F D YL EG + R + Sbjct: 559 RDVLLPKFEIPDEFMVPEDEEDGGVRGENKYLRHLTMEGAKRRYGEI----------TES 608 Query: 321 YDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLD 380 ERL+ EL I+ G+PGYFLIV +FI ++ V VGPGRGS AGS VAY L IT++D Sbjct: 609 IQERLDFELMTISNSGYPGYFLIVQDFIAEARKMDVSVGPGRGSAAGSAVAYCLGITNID 668 Query: 381 PLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKA 440 P+++DLLFERFLNP+RVSMPD D+DF E R +V+++V + YG+ V+QIIT+G MA K+ Sbjct: 669 PIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMDYVINKYGQKQVAQIITYGKMATKS 728 Query: 441 VIRDVGRVLGHPYGFVDRISKLIPPDPGMTL------------------AKAFEAEPQLP 482 IRD RVL P DRI+KLIP + F+ +L Sbjct: 729 AIRDTARVLDLPLFEADRIAKLIPGMMPSKWNLARFISESEEEVKKALRSDEFDNVKELI 788 Query: 483 EIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFD 542 I D+ I A+ LEG RN G HA GV+I P+ IT++ P+ ++ VTQFD Sbjct: 789 AIANEDDLAGETIQQAKILEGSMRNTGIHACGVIITPSDITNYVPVTTAKDSDLYVTQFD 848 Query: 543 KSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQR 602 S E AGL+K DFLGL+TLT+I ++++ R + LD P+DD++++ + QR Sbjct: 849 NSVAESAGLLKMDFLGLKTLTLIKDTVKLVKYRTGID----LDPDNFPIDDEETYALFQR 904 Query: 603 SETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEIS 662 ET +FQ ES GM+ +K L+P F D+IA+ AL+RPGPL+ + +F+ RK+G EEI Sbjct: 905 GETVGIFQYESPGMQKYMKDLKPTVFGDLIAMNALYRPGPLE--YIPSFVRRKNGDEEIK 962 Query: 663 YPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAK 722 Y ++ L TYGI +YQEQVM ++Q L+G+T G AD+LR+AMGKK+ + + K Sbjct: 963 YDL-----DACAEYLSETYGITVYQEQVMLLSQSLAGFTKGEADVLRKAMGKKQKDVLDK 1017 Query: 723 QRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEF 782 + F E A + G +A++ KI+ E FA Y FNKSHS YA ++YQT +LKAHYPAE+ Sbjct: 1018 MKPKFVEQAAQKGHDAKILEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEY 1077 Query: 783 MAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVG 842 MAAV++ +M++ ++V ++EC RMGL++L PD+N Y F VNDD + +G+GAIKGVG Sbjct: 1078 MAAVLSNNMNDIKQVSFFMEECKRMGLQVLGPDVNESYYKFTVNDDYAVRFGMGAIKGVG 1137 Query: 843 EGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRL-GPHRAALMNS 901 G +E I+E R K G ++ +FDL R D + N++ +E L ++G FD G RA + Sbjct: 1138 SGAVETIVENR-KDGRYKSIFDLAKRIDLRAANKKAIENLALAGGFDSFEGTTRAQYFHD 1196 Query: 902 -------LGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGER 954 A++ + + E Q +FG A E + E C+ W L E+ Sbjct: 1197 DGDGITFYEKAMRYGSKFQENENSSQVSLFGE-ASEVQIAEPVVPPCEDWSTMEKLAKEK 1255 Query: 955 ETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTER--GKVITAAGLVVAARVMVTKRGN 1012 E +G+Y++GHP++ + E++ + RL+ + GK + AG++ + V K G Sbjct: 1256 EVVGIYISGHPLDDFRFEMKYFCNA-RLEALKSMNEYVGKNLNFAGIINNVQHRVAKNGK 1314 Query: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKD-----RILIVSGQVSFDDFSGG-LKMT 1066 L+ E +F + K++ L ++ +ILI G V+ D +M Sbjct: 1315 GWAAFNLEGYDESYEFKIFGEEYLKFRHFLIQNNFAFLKILIKDGWVNHDTGKKTDPRMQ 1374 Query: 1067 AREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARA 1126 E+ + + E +A+ L + L + + + +++L ++ G V + Sbjct: 1375 FVEIRQLQDILEAFAKKLIVLLNIKDLHPEFIHKLSHLFNENK-GDNSVTFEIMELEKIK 1433 Query: 1127 RL 1128 +L Sbjct: 1434 KL 1435 >UniRef50_A8ZS53 DNA polymerase III, alpha subunit n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZS53_DESOH Length = 1217 Score = 1107 bits (2864), Expect = 0.0, Method: Composition-based stats. Identities = 373/1089 (34%), Positives = 580/1089 (53%), Gaps = 50/1089 (4%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 +FVHL VH+ YS++DG+ + LV +A MPA+AITD + G+++FY AGIKP Sbjct: 7 QFVHLHVHTCYSLLDGIIRPDDLVARAVEYKMPAVAITDHGTMFGVIQFYMEAVRAGIKP 66 Query: 65 IVGADFNVQCDLLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIID 117 I+G + V + D+ L+HL +LA GY+NL L + A Q G+ P ID Sbjct: 67 IIGCECYVAPRTIADKTPADHAGLSHLVLLAETMEGYRNLCRLATIAQQDGFF-HKPRID 125 Query: 118 RDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDR-YFLELIRTGRP 176 + L + +GLI LS G++ + RG D Y + DR +FLE+ G P Sbjct: 126 KALLQKHAKGLIGLSACLKGEIPHLICRGRQDEADAAARQYCDMLGDRNFFLEVQNNGLP 185 Query: 177 DEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSP 236 ++E+ +A ++++ +P+V TND ++D D AHEI + + G T+ D R + + Sbjct: 186 EQETVNNALLDMSRRLSIPLVGTNDCHYLDPEDSRAHEIALCLQTGQTIHDTDRLKFDTN 245 Query: 237 QQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMST-EDYLVKR 295 Q +S EMC P A ANTV IA+RC V P T T D L Sbjct: 246 QLNFKSTGEMCVFLEPFPRAAANTVAIAERCQVAFDFSARHFPVLETPPGKTMADMLEDS 305 Query: 296 AKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNG 355 A GL++R + + Y +RL EL VIN+MG PGYFLI+ +FI ++K+NG Sbjct: 306 AMAGLKKRWQHICKQSSH--ADKSVYQQRLAYELAVINEMGAPGYFLIIADFIAYAKNNG 363 Query: 356 VPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVI 415 + GPGRGS GSLV Y L IT +DP+E LLFERFLNPER MPD DVD C+ R+++ Sbjct: 364 ILTGPGRGSAPGSLVCYCLGITGVDPIEHGLLFERFLNPERNVMPDIDVDICINGREKIH 423 Query: 416 EHVADMY----GRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL 471 +++ D Y G D + I T GTM ++A +R+VGR L P V++++KLIPP +L Sbjct: 424 QYLMDKYNRDDGEDYAACIATLGTMRSRAALREVGRALIMPLDDVNKVAKLIPPG-ARSL 482 Query: 472 AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCD 531 A + EP L + ++ E L+D+ RKLEG+ + +A G+V++ +T + PLY Sbjct: 483 DDALKKEPALRALIDSKPEFGELMDVIRKLEGLPFHILMNAAGIVLSDKPLTCYTPLYRF 542 Query: 532 EEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPL 591 + +TQ D +E GL + D LG+R LT+I+ L++I + + D++ I Sbjct: 543 K--GEMITQLDARSLETMGLARLDLLGMRDLTVISDTLQLIKNQGRQTP----DLSRIDT 596 Query: 592 DDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNF 651 D + +L + +T VFQL S GMK+L+ + +P ++ L+AL+RPG L++GMV ++ Sbjct: 597 TDAATCQLLSKGDTFGVFQLASTGMKELLVKARPRSLSEVAVLIALYRPGLLENGMVADY 656 Query: 652 IDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRA 711 + RK G ++ +YP + L+P+L+ T G+ +YQEQ+MQ QVL+GYT G +D R+A Sbjct: 657 LGRKQGLKDTTYPTAK-----LEPILKETCGLPVYQEQIMQAVQVLAGYTPGQSDDFRKA 711 Query: 712 MGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQT 771 MGK+ E++A R F GA GI+ A+++F+ +E F YGFNK+HS AYA +++Q Sbjct: 712 MGKRIAEKIADHRQRFINGAAAKGIDKATALQLFEQLEYFGAYGFNKAHSIAYAFIAWQM 771 Query: 772 LWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEI 831 LKAH+PAEFMA + +++ L+ EC + +LPPD+N F V +G+I Sbjct: 772 ACLKAHFPAEFMAVWLDISFGCVDRIARLIGECRDSNIPVLPPDVNQSARQFTVV-NGQI 830 Query: 832 VYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKL----NRRVLEKLIMSGA 887 G+ +K +G I+AII R G F L D C R + +R+ LE L+ +GA Sbjct: 831 RCGLACVKKTDKGLIDAIIAERTAAGPFVSLSDFCNRMSAGRPELLQDRKALENLVKAGA 890 Query: 888 FDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQ 947 FD G R+ +M L + LK + + + + W Sbjct: 891 FDSTGATRSQMMAVLDEILKPSLDLQQPR---------------KPAVPALPEVGEWSPH 935 Query: 948 VVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMV 1007 + E+ +G+ LT P +++R L ++ +G + G+ A Sbjct: 936 LRRALEKRAMGICLTPAPPAYCHAKLKR-PTTTPLCSIYENPQGGRVAVDGIWKAVEYKQ 994 Query: 1008 TKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTA 1067 K G + + L+D + +EV++ + + + L R +IV G+ D+ + A Sbjct: 995 GKDGCPMALAELEDNNAAIEVVIPAEIYESARHALLPGRPVIVEGRYECDEVRISP-LQA 1053 Query: 1068 REVMDIDEA 1076 ++ + + Sbjct: 1054 ERIIPLTDI 1062 >UniRef50_A9B8D8 DNA polymerase III, alpha subunit n=6 Tax=Chloroflexi (class) RepID=A9B8D8_HERA2 Length = 1296 Score = 1101 bits (2848), Expect = 0.0, Method: Composition-based stats. Identities = 391/1102 (35%), Positives = 606/1102 (54%), Gaps = 58/1102 (5%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 FVHL VHS+YS++DG A T + ++AA L M ++AITD + G ++FY A +KP Sbjct: 3 DFVHLHVHSEYSLLDGYATTKAIAERAAELQMDSIAITDHGVMYGAMEFYANAKKANVKP 62 Query: 65 IVGADFNVQCDLLGD-------ELTHLTVLAANNTGYQNLTLLISKAYQRGYGAA---GP 114 I+G + + + D HL ++A N GY+NL L S+++ G G P Sbjct: 63 IIGMEAYIAPNSNKDPMVKGGKNYYHLLLIAQNEVGYRNLVKLTSRSHLDGMGKGIFARP 122 Query: 115 IIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRT 173 IDR L + +EGLI+ S G+V + + E VA++ + F P+ YF+EL Sbjct: 123 RIDRQLLEQYHEGLIVTSSCIAGEVIQQVQAKQRQKAIETVAWFRDLFGPENYFIELQLH 182 Query: 174 GR-PDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 P+ V +A +P+VATND F+ D D H +A+ TL + Sbjct: 183 NNTPELVEINEELVRIANEMHVPLVATNDTHFVRREDLDTHSRVMAMGFNLTLQELCSKN 242 Query: 233 NYSPQ-QYMRSEEEMCELFADIPEA-LANTVEIAKRCNVTVRLGEYFLPQFPTGDMS-TE 289 + ++ S +EM + + A + NT IA CN+ + G LP+F + Sbjct: 243 YQMDETYHIMSGDEMWDRYKIYGTAPMENTRRIADMCNLKLDFGRVELPEFDIPEGHDAA 302 Query: 290 DYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQ 349 YL +EGL +R EY +RL EL VINQ GFP Y LIV ++++ Sbjct: 303 SYLRLICEEGLIKRCNGNP---------TEEYVQRLSYELDVINQTGFPDYMLIVWDYVK 353 Query: 350 WSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCME 409 +++ NG+P P RGS SLV Y L ITD+DP++ LLFERFL+PER+ MPD D DF Sbjct: 354 FARSNGIPCLP-RGSAGASLVLYCLGITDVDPVQNKLLFERFLSPERLEMPDIDTDFADA 412 Query: 410 KRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP-G 468 +R ++++++A YGR+ V+QIIT+GT+ AKA +RD+GRVL P VDR++KLIP P G Sbjct: 413 RRGEILDYIATKYGRENVAQIITYGTLGAKAALRDMGRVLDIPLSEVDRVAKLIPTLPVG 472 Query: 469 MTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPL 528 MT+AK+ + P+L +IY+ D +++ L+D A+K+EG ++ G HA GVV++ + + PL Sbjct: 473 MTIAKSLDKVPELKQIYDTDPKLRELMDWAQKVEGRMKSVGTHACGVVVSRHPLENMVPL 532 Query: 529 YCDEEGKH-PVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIA 587 + +H + F+ + GL+K D LGL L++ AL++I + K + ++ Sbjct: 533 QRTTKDEHGVMAAFEGPTLAKMGLLKMDILGLTNLSVAAEALQLIEQTTGKT----MWLS 588 Query: 588 AIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGM 647 IPLDDKK+F+ L R ET VFQLES GM + +L+P +D+ +VAL+RPGPL+ Sbjct: 589 DIPLDDKKTFEALGRGETVDVFQLESAGMTRYLVQLKPTRVDDLYGMVALYRPGPLEQ-- 646 Query: 648 VDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADM 707 + +I K+ I Y H LKP+LE TYG+I+YQEQ+MQ+ Q ++ YTLG A + Sbjct: 647 IPVYIHNKNNPHAIKY-----IHPILKPILEDTYGVIVYQEQIMQLLQAVAEYTLGEAYI 701 Query: 708 LRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALV 767 + +A+ KK E MA+ F EG + G+ A ++++L+ FAGY FN+ HS Y L+ Sbjct: 702 VIKAISKKNKELMAENSVRFKEGCLRKGLTQAQADELWELILPFAGYSFNRPHSTLYGLL 761 Query: 768 SYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVND 827 SYQT WLK +YP E+M A ++A ++V V E R+G+ + PPD+N F + D Sbjct: 762 SYQTAWLKNNYPTEYMTATLSAASGEIDEVAKSVAEASRLGVAVSPPDVNGSKEGFTIVD 821 Query: 828 -----------DGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNR 876 + I +G+ AI+ VG GPI+AI++ R++ G F + D CAR D LN+ Sbjct: 822 IAGELPEGIKYNRGIRFGLSAIRNVGVGPIQAILKVRDESGPFSSIEDFCARVDRGVLNK 881 Query: 877 RVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQ 936 RV+E L+ GA D L R + L A+ A + KA GQ +F +L + Sbjct: 882 RVMESLVKCGAMDSLPGTRHQKLAILDRAISAGHETQKAREAGQNSLFDMLGGGEQTSTP 941 Query: 937 SYASCQPWP-------EQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTE 989 + + P ++ +L+ E+E LG+Y++ HP+ Q L G + L + Sbjct: 942 TISPIPFPPAATGLEMQRELLNWEKELLGMYISEHPMAQALANAPHDPGRISLGMIDKKH 1001 Query: 990 RGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILI 1049 G I G++ + + TK+G+ + + ++D G +E + F L++Y +LL D I+ Sbjct: 1002 IGTTIRLIGMINNTKRIQTKKGDSMLVGKVEDLEGEIEFVAFPRTLEQYAELLVDDAIVQ 1061 Query: 1050 VSGQVSFDDFSGGLKMTAREVM 1071 ++ +V D+ +++ V Sbjct: 1062 ITAKV--DNRRDEMQLMLESVT 1081 Score = 43.4 bits (101), Expect = 0.060, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 36/78 (46%), Gaps = 4/78 (5%) Query: 1083 GLAISLTDRQIDDQLLNRLRQS--LEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSD 1140 L I L + + R+++ + G P+ +Y + ++ ++R++P + Sbjct: 1219 HLHIYLPRSGNTETDIRRMQEIDRVLRGYEGDQPITIYL--PNPMGQVMLEPSYRINPQE 1276 Query: 1141 RLLNDLRGLIGSEQVELE 1158 LL++L ++G E LE Sbjct: 1277 GLLSNLYSMLGQESAVLE 1294 >UniRef50_A4EAI0 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EAI0_9ACTN Length = 1267 Score = 1100 bits (2845), Expect = 0.0, Method: Composition-based stats. Identities = 393/1278 (30%), Positives = 614/1278 (48%), Gaps = 149/1278 (11%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAAL--------------GMPALAIT--------- 42 FVHL H+ +SM+DG + +V +A L G+P LA+ Sbjct: 3 FVHLHNHTVFSMLDGATRIQDMVNRAVELSMPAVAITDHGYMYGVPDLALACDAVNHNTP 62 Query: 43 DFTNLCGLVKFYGAGHGAG-------------------------------------IKPI 65 ++ F IKPI Sbjct: 63 EYKTWSHDKAFLEKDRRDELVEPDPEESPREHAQYVKDMAMWDEKGNIDELKPPLVIKPI 122 Query: 66 VGADFNVQCDLL-----GDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 G + D EL H+ +LA + GY NL +S+A +G+ P + D Sbjct: 123 FGCEVYFTPDETLARDHKPELYHMILLAKDQEGYVNLMQTVSEAAVQGF-YYKPRVTLDN 181 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRTGRPDE- 178 L +G+I S G + + + RG+ + + + F P +++E+ G + Sbjct: 182 LRRHAKGMICTSACIAGIIPKYIDRGDMEGAIKWAETFRDTFDPGDFYIEIQEHGITTDN 241 Query: 179 ----ESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNY 234 E +++A+ G+ V+ATND ++ D ++ + I +DDP R R Sbjct: 242 GLTDEQMDRTLIDIAKQVGVKVIATNDFHYLRREDAPVQDVIMCIGMNAKVDDPNRMRMT 301 Query: 235 SPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFP--TGDMSTEDYL 292 + YM++EEEM +F PEA NT+EIA +C V + LP+FP + E Sbjct: 302 GSEFYMKTEEEMRAMFPYCPEACDNTLEIADKCYVELDWDSIILPRFPLLDPGETHESQF 361 Query: 293 VKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSK 352 + ++GL + D R ER E E +VI GF YFLIV E++QW+K Sbjct: 362 RRECEKGLRQHYG---DDWATREIGGVNIKERFEYEYKVICDKGFAAYFLIVAEYVQWAK 418 Query: 353 DNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRD 412 DNG+ VGPGRGS AG++VAYA+ IT DPLE L+FERFL+P+R MPD D+DF E+R Sbjct: 419 DNGIGVGPGRGSAAGAIVAYAMNITAFDPLENGLMFERFLSPQRTEMPDIDMDFDDERRL 478 Query: 413 QVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA 472 +V+EHV +YG + V+ +IT+ T+ AK I D RVL +P R+SK++ DP + L Sbjct: 479 EVVEHVRQLYGPEKVTHVITYSTIKAKQAINDAARVLDYPVYMGQRLSKMVSSDPKVKLK 538 Query: 473 KAFEA--------EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524 + + P E Y+ D++ + +ID A +EG+TR G HA V+I + + Sbjct: 539 QVLDKQPGKEDLFNPDFAEAYKKDDDARRIIDTALSIEGLTRGEGVHACAVLICRDPVNE 598 Query: 525 FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584 P D +G +TQ++ V GL+K DFLGLRTLT+I+ A I K + + Sbjct: 599 HVPTKLDTKGGVEITQYEGHTVADMGLLKMDFLGLRTLTVISKAKANIKKNFGID----I 654 Query: 585 DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644 IP DD + F ++ T VFQ+ES GM IK ++P ++ ++AL+AL+RPGPL Sbjct: 655 KEEEIPFDDPEIFKLMGSGHTAGVFQVESAGMTATIKNMKPTEYKHVVALIALYRPGPLG 714 Query: 645 SGMVDNFIDRKHGREE-ISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLG 703 +GMV ++I+R +G+E +SY D L +L TYG ++YQEQVM I+ + G++ G Sbjct: 715 AGMVSSYINRMNGKEPAVSYDD------RLDDILGETYGTMVYQEQVMLISVEMCGFSKG 768 Query: 704 GAD-MLRRAMGKKKPEEM------------AKQRSVFAEGAEKNGINAELAMKIFDLVEK 750 +D +R+ + KKK + + + GA KN E+A KI+D V + Sbjct: 769 ESDSRIRKPVAKKKIKLLTSTVLHWEDGSDETTYDHWMNGAIKNNYTREVAQKIWDDVLE 828 Query: 751 FAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLK 810 FA Y FNKSHSA YA++ QT WLKAHYP E+MAAV+T+ T+K+V V C G+ Sbjct: 829 FASYAFNKSHSAGYAILVMQTAWLKAHYPHEYMAAVLTSYTGKTDKIVHYVSACRHDGIP 888 Query: 811 ILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTD 870 +L PD+N F +G + +G+ I+GVG G +AII R GG F+ L D R D Sbjct: 889 VLSPDVNESGTEFTATKEG-VRFGLAGIRGVGTGVAQAIIAEREAGGPFKTLHDFVERVD 947 Query: 871 TKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLG-----DALKAADQHAKAEAIGQADMFG 925 + + NRRV+E LI +GAFD G R +M+ + + + AA + K A GQ F Sbjct: 948 SSQANRRVIESLIKAGAFDSTGYPRRQMMHFVDKNNPENIIDAAVKRQKDRASGQTSFFD 1007 Query: 926 VLAE---EPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYV----- 977 + + ++ Q W + L E+E LG+Y++ HP+ + + + Sbjct: 1008 MFGDVEGSGFEVSVPDPDGQEWDRHLKLSQEKEVLGIYVSDHPLRPFEYALAKARDFSFS 1067 Query: 978 ---------GGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEV 1028 GK + AG+V + VTK G+ +GI L+D G V Sbjct: 1068 QIDTGYEVQNPTGGTINQEIPEGKALWWAGMVSSVSKRVTKNGDPMGIVQLEDMEGEATV 1127 Query: 1029 MLFTDALDKYQQLLEK-----------DRILIVSGQVSFDDFSGGLKMTAREVMDID-EA 1076 ++F + + L D + + G++ D ++ A+E++ ++ Sbjct: 1128 VVFPKTYKEAEGYLYGEVDPETGAQLSDAFVRIKGKLERSDRGD--QIIAQEIVPLELNE 1185 Query: 1077 REKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRV 1136 + + + + + + RL L + G V ++ ++ D R LR +V Sbjct: 1186 ENNKPKVFEVMVPNSRFSQGNMARLATVLTTNPGGD-RVEIFIEQVDGRV-LRAEVPAKV 1243 Query: 1137 SP-SDRLLNDLRGLIGSE 1153 + S LL + + ++G++ Sbjct: 1244 NARSIPLLAEAKAIVGNQ 1261 >UniRef50_C2MCQ0 DNA polymerase III, alpha subunit family n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2MCQ0_9PORP Length = 1272 Score = 1099 bits (2844), Expect = 0.0, Method: Composition-based stats. Identities = 403/1192 (33%), Positives = 601/1192 (50%), Gaps = 125/1192 (10%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG---- 61 +V L VHS YS++DG+A +V KA A GMP +A+TD + G+ F + Sbjct: 18 YVPLHVHSHYSILDGMAPVEKIVDKAVACGMPGIALTDHGAMYGIKNFTNYANDKINGDK 77 Query: 62 --------------------------------------IKPIVGADFNVQCDLL------ 77 K I+G + V L Sbjct: 78 LSQIKSLGKQIKELEADAANAEEVARLQEEVKTIERSLFKAIIGCEVYVARRSLELKDKD 137 Query: 78 -----------GDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNE 126 HL +LA N GY+NL ++S A++ G P ID+ L E +E Sbjct: 138 AKDPDNPTRSIDRSGYHLILLAKNLKGYRNLIKMVSIAWEHG-EYYKPRIDKKLLTEHHE 196 Query: 127 GLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPD--------- 177 G+I S G++ + +L G E +Y+E F + Y+LE++ D Sbjct: 197 GIIASSACLGGEIAQHILHGRLEEARETARWYQETFGEDYYLEIMLHPNSDPLGGQETYQ 256 Query: 178 -EESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSP 236 ++ +++ + G+ V+ATND F++ D +AH+ + + + DP R R Y+ Sbjct: 257 KQQLVAQEVLKIGQELGIKVIATNDTHFLNEEDAEAHDHLICMTTNSPISDPNRMR-YTK 315 Query: 237 QQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF--PTGDMSTEDYLVK 294 Q++++S EEM LFAD P+ L NT+E+ + +P F P G S +DYL Sbjct: 316 QEWLKSPEEMTALFADYPDVLENTLEVCDKVEYYSIDHAPLMPHFELPEGFASEDDYLRH 375 Query: 295 RAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDN 354 EG ++R P PE ER++ EL VI MGFPGYFL+V +FI ++ Sbjct: 376 LTYEGAKKRYGDPVP---------PEVQERIDMELGVIQNMGFPGYFLVVQDFIAAARKL 426 Query: 355 GVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQV 414 GV VGPGRGS AGS VAY L IT ++P+++ LLFERFLNP+R+SMPD D+DF + R +V Sbjct: 427 GVRVGPGRGSAAGSAVAYCLSITQIEPIKYGLLFERFLNPDRISMPDIDIDFDDKNRWRV 486 Query: 415 IEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP-----GM 469 ++ V + YGRD VS IIT TMA K I+ V RV P +R+ KLIP P + Sbjct: 487 LDWVTNKYGRDHVSNIITLTTMATKGAIKGVARVEELPLDQANRLCKLIPDRPPEGVKHL 546 Query: 470 TLAKAFEAEPQLPEI-YEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPL 528 L + + E +E++ I AR+LEG G HA GV+I+ ++D PL Sbjct: 547 NLEWMVQNNQEFREASVSQNEQLANTIRYARQLEGTASTTGVHACGVIISGPPVSDVVPL 606 Query: 529 Y----CDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584 D + V Q++ +E GL+K DFLGL+TL+IIN ALE I + L Sbjct: 607 STAIDPDTNERKLVAQYEGKVIEPTGLIKMDFLGLQTLSIINDALENIKVSYGID----L 662 Query: 585 DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644 DI IP+DD K+F++ + +T FQ ES GM+ +++L+P F+D++A+ AL+RPGP+ Sbjct: 663 DIDTIPVDDPKTFELYSQGDTVGTFQFESPGMRKYLQQLEPTEFKDLVAMNALYRPGPMD 722 Query: 645 SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704 + + FI+RKHGR+EI+Y ++P L+ TYGI +YQEQVM +++VL +T G Sbjct: 723 N--IPTFIERKHGRQEITYDL-----PEMEPYLKDTYGITVYQEQVMILSRVLGDFTRGD 775 Query: 705 ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764 +D LR+AMGKKK +EMAK R F E G E +I+D +KFA Y FNKSHS Y Sbjct: 776 SDSLRKAMGKKKEKEMAKYRIKFVENGVTKGHPRETLERIYDGWQKFASYAFNKSHSVCY 835 Query: 765 ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824 A V+YQT +LKAHYPA+FMAA++T + + ++K+ ++E MGL++ PD+N F Sbjct: 836 AWVAYQTAYLKAHYPAQFMAALLTCNQNKSDKLTKYLEEVQHMGLEVKGPDVNESFTAFS 895 Query: 825 VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884 N DG I +G+G I VG EAII+ R + G +++++D RTD +RR LE LI+ Sbjct: 896 ANKDGVIRFGLGGISHVGLSVAEAIIKERKEQGAYQDVYDFFQRTDLTNCSRRALEALIL 955 Query: 885 SGAFDRLGPHRAALMNSLGD-----------------ALKAADQHAKAEAIGQADMFGVL 927 SGAFD G R + ++ QA +FG Sbjct: 956 SGAFDSFGIDREVYFAPIAKSGVSGLSYGKDETFLTALMQYGKILESERTQVQASLFGDS 1015 Query: 928 AEEPEQIEQSYA-SCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMH 986 + + +PW L E+ +G+YL+ HP++ Y IE Y+ D+ Sbjct: 1016 DPSVKLPKPIPPKDVEPWSNLERLTKEQSYIGMYLSAHPLDPYAFAIE-YLCNCPASDLA 1074 Query: 987 PTER--GKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEK 1044 +T AGLV R ++K+ I ++D SG E+ LF + ++ Sbjct: 1075 QFAELGLTQLTCAGLVTKVRQGISKKNEPYAIIQIEDASGSGEIPLFGKDYVNFGNFAQE 1134 Query: 1045 DRILIVS-GQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDD 1095 ++V G L T + + + + E R + +++ Q +D Sbjct: 1135 GLAILVKMGVAPSRFDPNRLYRTVQSMQLLSDITEDAFRSIQLTIDLSQGED 1186 >UniRef50_C3XGX7 DNA polymerase subunit III n=1 Tax=Helicobacter bilis ATCC 43879 RepID=C3XGX7_9HELI Length = 1268 Score = 1099 bits (2843), Expect = 0.0, Method: Composition-based stats. Identities = 407/1179 (34%), Positives = 650/1179 (55%), Gaps = 100/1179 (8%) Query: 3 EPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGI 62 F HL +H++YS++DG K L K+ LGM ++A+TD N+ G ++FY AGI Sbjct: 6 NIPFTHLHLHTEYSLLDGANKLDVLAKRIKELGMNSVAMTDHGNMFGAIEFYKIMKKAGI 65 Query: 63 KPIVGADFNVQCD------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPII 116 KPI+G + + H+ + A N GY+NL L S+++ +G+ I Sbjct: 66 KPIIGIEAYIHNKEDLGDKSPNTPKFHICLYAKNEEGYKNLMYLSSQSFIQGF-YRTSRI 124 Query: 117 DRDWLIELNEGLILLSGGRMGDVGRSLL-----------------RGNSALVDECVAFYE 159 ++ L E ++G+I S G++ +L E + Y+ Sbjct: 125 NKKILREYSKGIICSSACLNGEISWNLNLSPYMDSKKRDKKIIMGAKGYDGAKEAIHEYQ 184 Query: 160 EHFPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAI 219 + F D +++E++R G D+ + + L+ G ++ATND + + D E + I Sbjct: 185 DIFGDDFYIEIMRHGIADQRFIDNDLLRLSLETGAKLIATNDAHYTNKEDSSMQEAAMMI 244 Query: 220 HDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLP 279 ++DPKR R+ + Y++S ++M +LF DIPEA+ NT EIA +C++T+ L + P Sbjct: 245 AMATDINDPKRLRHTVQEFYIKSPKQMLDLFMDIPEAVFNTQEIADKCDLTIDLKDDKNP 304 Query: 280 QFPTGD--------------MSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERL 325 P +Y + K+GL +RL + D+ E Y +RL Sbjct: 305 PTPPSFKFAKEYAENEGLTIQDEAEYFAYKCKQGLVKRLEQVEKDKHE------IYHKRL 358 Query: 326 ETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFD 385 + E+ +I QM FPGY LIV +FI ++K N +PVGPGRGS AGSLVAY L+ITD+DP++++ Sbjct: 359 QEEIDIITQMKFPGYMLIVWDFINYAKQNKIPVGPGRGSAAGSLVAYCLEITDVDPIKYN 418 Query: 386 LLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDV 445 LLFERFLNPER+SMPD D DFC +R ++ E++ YG V+Q+ITFG M A+ VIRDV Sbjct: 419 LLFERFLNPERISMPDIDTDFCQRRRPEMFEYMKAKYGEYNVAQVITFGKMLARGVIRDV 478 Query: 446 GRVLGHPYGFVDRISKLIPPDPGMTL----------AKAFEAEPQLPEIY-----EADEE 490 R+ G DR +KLIP G+TL A+E EP++ E+ + DE+ Sbjct: 479 ARIYGMSIPNADRFAKLIPSKLGITLKGYNKNGNFIEGAYELEPKIQELITEGDNDRDEK 538 Query: 491 ----VKALIDMARKLEGVTRNAGKHAGGVVI-APTKITDFAPLYCDEEG-KHPVTQFDKS 544 + + +MA +LE + RN GKHA +V+ + ++ PLY E VTQ+ Sbjct: 539 NRGLARKVWEMALRLEKLNRNTGKHAAALVVDSEKELWHKVPLYVSERTKGVMVTQYSMK 598 Query: 545 DVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSE 604 +E L+KFDFLGL+TLT+I AL++I ++++ + ++D+K + L+ Sbjct: 599 YLEPVDLIKFDFLGLKTLTVIQDALDIIK----DTNNIDINLSTLDVNDEKVYRTLRSGN 654 Query: 605 TTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYP 664 T +FQLES GM++ +RLQP +D IAL+ALFRPGP+ SGM D +I+RKHGR +SY Sbjct: 655 TLGIFQLESSGMQEFNRRLQPSGIDDAIALLALFRPGPMDSGMSDEYINRKHGRSPVSYT 714 Query: 665 DVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQR 724 + L+P+L+ TYG+I+YQEQVMQI QV+ G++LG AD++RRAMGKK + MA+ R Sbjct: 715 -----FKELEPILKNTYGVIVYQEQVMQIVQVIGGFSLGEADLVRRAMGKKDAQIMAENR 769 Query: 725 SVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMA 784 + FA+GAEKNG + A ++FD + KFA YGFNKSHSAAY ++++QT +LK +Y EFMA Sbjct: 770 TKFADGAEKNGFDRTKAEELFDQIAKFAEYGFNKSHSAAYGILTFQTAYLKTYYEHEFMA 829 Query: 785 AVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHV----NDDGEIVYGIGAIKG 840 A+++++ E V +DE MG++ILPP +N+ +F V N +IV+G+ AIKG Sbjct: 830 AMLSSESHKIEAVATYIDEARAMGIEILPPHVNTSQTNFSVIIDSNGKKKIVFGLNAIKG 889 Query: 841 VGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMN 900 GEG +++II+ R + G F+ L D + D K+++++VLE L+ SG+ D LG RA++++ Sbjct: 890 AGEGALQSIIDDRKQKGAFKNLEDFITKADFKRISKKVLEPLVKSGSLDNLGYTRASMLD 949 Query: 901 SLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLY 960 +L + ++ + G G+ E E + +L+ E E+LG+Y Sbjct: 950 NLDYICDLGRRMSRERSGG-----GLFGAEELCPELQIKPLPELHNKSLLEYEYESLGIY 1004 Query: 961 LTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLD 1020 L+GHP++ + EIE+ V++ ++ G + G + + ++K G + Sbjct: 1005 LSGHPLDDFRSEIEQIKNVVKIAELENIADGSRVMLIGKLEDLQRKMSKNNRTYGTAKIM 1064 Query: 1021 DRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFD-----------DFSGGLKMTARE 1069 D SG+ + LF D L+ + + + G++ + + S +++ E Sbjct: 1065 DFSGKQPLTLFEDQLNLL-DSFDLSNPIGIVGKLEKERMVTEGEDGSAEVSYKIEIRVHE 1123 Query: 1070 VMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPH 1108 + + +E + + + Q + ++ Sbjct: 1124 IHTLQSCKE-----IKLRVKKDNAKSQTNTQDSKTFTKQ 1157 >UniRef50_C0R3A1 DNA polymerase III, alpha subunit n=9 Tax=Rickettsiales RepID=C0R3A1_WOLWR Length = 1158 Score = 1097 bits (2838), Expect = 0.0, Method: Composition-based stats. Identities = 445/1162 (38%), Positives = 682/1162 (58%), Gaps = 65/1162 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F+HLRVHS YS+++ K L+ MPA+AITD NL G ++F GI+ I Sbjct: 51 FIHLRVHSVYSLLESSVKIEELIGLCLRNKMPAVAITDSGNLFGSLEFAEYAASRGIQLI 110 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQ-RGYGAAGPIIDRDWLIEL 124 +G + V+ ++ + +LA N GY NL L+S++++ R + P +D D L+ L Sbjct: 111 IGCNIIVKHS---EQNLPILLLAKNEQGYTNLVTLVSESFRKRKNNSDIPYVDFDELLNL 167 Query: 125 NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHA 184 + GLI L+GG + + LL + V++ ++ F ++EL R G E Sbjct: 168 STGLIALTGGC---LAQLLLGQDKETVEKLLS----AFNGHLYVELQRHGLSKELELEET 220 Query: 185 AVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEE 244 ++ A R +P+VATNDV F + SD++A++I I +G + + + + Y +S Sbjct: 221 LIDFAYQRNIPLVATNDVFFPNRSDYEAYDILTCISEG-SYALENNRKKLTTEHYFKSVA 279 Query: 245 EMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTE-DYLVKRAKEGLEER 303 EM ELF+DIPEA+ NT+ IAKRC+ R + LP+FP + TE + L ++A GLE R Sbjct: 280 EMEELFSDIPEAIHNTLVIAKRCSYMPRSRQPILPKFPCRENKTENEELREQAVAGLEFR 339 Query: 304 LAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRG 363 +A E +Y +RL EL VI M + GYFLIV +FI+WSK NG+PVGPGRG Sbjct: 340 IAN------ETDIDLKQYYDRLNYELSVITSMNYAGYFLIVSDFIRWSKANGIPVGPGRG 393 Query: 364 SGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYG 423 SGAGS+VA+ L+ITDLDP++F L+FERFLNP+R+SMPDFD+DFC EKRD VI++V YG Sbjct: 394 SGAGSIVAWGLQITDLDPIKFGLIFERFLNPDRISMPDFDIDFCQEKRDLVIDYVQKKYG 453 Query: 424 RDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP--GMTLAKAFEAEPQL 481 V+QIITFG + A+AV+RDVGRVL PY VD+ISK++P +P +TL++A E + L Sbjct: 454 --YVAQIITFGKLQARAVLRDVGRVLQMPYSQVDKISKMVPFNPVNPVTLSQAIEFDQNL 511 Query: 482 PEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQF 541 + ++DE + L+D++ KLEG+ R+ HA G+VI K+ +F P+Y D P+TQ+ Sbjct: 512 QKERDSDEVIAKLLDISLKLEGIYRHVSTHAAGIVICDQKLENFVPVYYDPNSALPITQY 571 Query: 542 DKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQ 601 VE AGL+KFDFLGL TLT+I+ +IN+ R K +DI+++PLDD+K+++ML Sbjct: 572 SMKYVEKAGLIKFDFLGLGTLTLIDHVCRLINRDRQK-----IDISSVPLDDQKTYEMLS 626 Query: 602 RSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEI 661 ++ VFQLES GM++ + +L+PDC ED+IAL++L+RPGP+ + + ++ RKHG E+ Sbjct: 627 SGDSIGVFQLESSGMREALIKLKPDCIEDIIALISLYRPGPMDN--IPTYVARKHGLEKP 684 Query: 662 SYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMA 721 Y H L+ VL+ T+G+I+YQEQVM+IA++LSGY+L AD+LRRAMGKK EEM Sbjct: 685 DY-----IHPLLEEVLKETFGVIIYQEQVMEIARILSGYSLAEADLLRRAMGKKIKEEMD 739 Query: 722 KQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAE 781 KQR +F +GA KNG++ + A IFDLV KFAGYGFNKSH+AAYA++SYQT +LKA+YP E Sbjct: 740 KQRELFIQGATKNGVDYDRASYIFDLVAKFAGYGFNKSHAAAYAVISYQTAYLKANYPLE 799 Query: 782 FMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGV 841 F A+M ++D+ +K+ G+ +L PDIN F + D+ I YGI A++ V Sbjct: 800 FFTALMNLNIDDRDKLNLFYHAAKFSGVTVLSPDINKSQAEFSIEDE-RIRYGIAALRNV 858 Query: 842 GEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNS 901 G E I+ R+ +++++ + +N+R LE LI SGAFD + +R L S Sbjct: 859 GFSIAEGIVNVRSSAC--KDIWEFIQNSG-HIINKRALESLIKSGAFDSVHKNRKQLYES 915 Query: 902 LGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYL 961 + + A+++ + QA +FG L + ++ + + + E+ L+ E +LG YL Sbjct: 916 MDTLIYFANKNKQDRESSQAALFGSL----DVLKPKLENVEDFDEEEKLEHELFSLGFYL 971 Query: 962 TGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDD 1021 T HP+ ++ +E+ ++ + AG+++ AR+ ++RG R I TL D Sbjct: 972 TNHPLEKFRTLLEKL-------NIGFIGENRTAKTAGVILNARMRTSERG-RFVILTLSD 1023 Query: 1022 RSGRLEVMLF-TDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKY 1080 E+ + + +++ + L +I+ D T DI E ++ Sbjct: 1024 PHNVSEIAFYNNEIIEEKRDLFSPGTFVII-------DLEASENTTRLAGKDISEFTKRV 1076 Query: 1081 ARGLA-ISLTDRQIDDQLLN-RLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSP 1138 + + LT D Q L L+ G + L + + + ++P Sbjct: 1077 TSTIKELVLTTECTDSQKAAMELNAILKDE--GRTKIMLKLLLEKHKVSILLPGAYSIAP 1134 Query: 1139 SDRLLNDLRGLIGSEQVELEFD 1160 +++ ++ L + VE+ + Sbjct: 1135 --QVIYEISNLSWIKGVEINTN 1154 >UniRef50_B7GGS6 DNA polymerase III, alpha subunit n=1 Tax=Anoxybacillus flavithermus WK1 RepID=B7GGS6_ANOFW Length = 1077 Score = 1093 bits (2827), Expect = 0.0, Method: Composition-based stats. Identities = 378/1155 (32%), Positives = 607/1155 (52%), Gaps = 86/1155 (7%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F+HL+V S YS++ K LV +A L PA+A+TD L G++ FY A GIKPI Sbjct: 7 FIHLQVRSGYSLLSSTVKIEELVTRARELQFPAIALTDENVLYGVMPFYEACQAHGIKPI 66 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 +G + + + L +LA NN GY+ L + + I Sbjct: 67 IGMMATIMDEHGHPD--QLVLLAKNNDGYRQLVHIATAIQTNDGKG----ISLLDFSHHT 120 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRTGRPDEESYLHA 184 LI ++ G G V + LL G + V Y + F +++ + R G ++E L Sbjct: 121 SELIGMTSGVYGRVEQHLLNGEIEQAEAIVQTYAKLFQRGDFYINVQRHGLQEQEHLLSL 180 Query: 185 AVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEE 244 E ++ +P+VATNDVR+I D A E +A+ G + DP RPR + + +++S Sbjct: 181 LFEHSKRWDIPLVATNDVRYIYKEDTLAFECLLAMKHGKKMVDPNRPRLATNEYHLKSAH 240 Query: 245 EMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKRAKEGLEER 303 EM LF++ EA+ TV IA+RC+VT +F+P++P + ++YL E +R Sbjct: 241 EMAALFSNGYEAVEETVRIAQRCHVTFESKRWFMPRYPVPSGKTADEYLQTWCWEQFTKR 300 Query: 304 LAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRG 363 R Y RL+ ELQ+I QM F YFLIV +F++++++ G+ GPGRG Sbjct: 301 FP----------DRPKAYVARLQYELQIIQQMNFSDYFLIVADFVRFARERGILTGPGRG 350 Query: 364 SGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYG 423 S AGS+VAY L IT +DPL++ LLFERFLNP R+S+PD D+DF ++R++VI ++ YG Sbjct: 351 SAAGSIVAYILGITQVDPLQYGLLFERFLNPARLSLPDIDIDFPDDRREEVIRYIEQKYG 410 Query: 424 RDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPE 483 D V+QI+TFGT ++ IR+VGRV + + D Sbjct: 411 TDHVAQIVTFGTFGMRSAIREVGRVFDVDEREIQQTLATGSFD----------------- 453 Query: 484 IYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDK 543 + +A+++EG+ ++ HA G+VI+P +TD PL + + VTQ+ Sbjct: 454 ------RTRPWHYVAQRIEGLPKHTSVHAAGIVISPRPLTDIIPLQSGQTTTY-VTQYAM 506 Query: 544 SDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRS 603 +E GL+KFD L L+ LT+I ++ I +R L +P+DD+K++ +L R Sbjct: 507 DALERLGLLKFDLLALKNLTMIEQMIQSIEQRTGHR----LSFENMPIDDQKTYALLSRG 562 Query: 604 ETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISY 663 +T VFQLES GMK +++ LQP FED++A+ ALFRPGP++ + +I RKHGRE I Y Sbjct: 563 DTFGVFQLESEGMKRILRELQPTTFEDIVAVNALFRPGPMEQ--IPTYIARKHGREPIRY 620 Query: 664 PDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQ 723 H+ L+ +L+ TYG+I+YQEQ+M+IA+ ++ ++L AD+LRRA+ KK +M K+ Sbjct: 621 -----MHDDLQSILQSTYGVIVYQEQIMKIAEQMAKFSLAQADLLRRAISKKDVGQMEKE 675 Query: 724 RSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFM 783 + F EG +NG +A LA ++++L+ +FAGYGFN+SH+ AY+ ++Y ++KAHYP +F Sbjct: 676 KKHFIEGCIQNGYDAHLANELYELIVRFAGYGFNRSHAVAYSYIAYMLAYIKAHYPLDFY 735 Query: 784 AAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGE 843 AAV+T EK++ V E +++LPP I HF V+D+G I +G+ AIK V Sbjct: 736 AAVLTNVSGQKEKMMQCVHELRSKKIRLLPPSIARSEGHFTVDDNG-IRFGLLAIKQVNA 794 Query: 844 GPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLG 903 ++ ++ R K F + FD +R + ++V+E LI SG FD RA L S+ Sbjct: 795 AFVKQMVRERQKR-PFSDFFDFVSRLRMESSQKKVIEALIFSGCFDEFHIERATLYASID 853 Query: 904 DALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTG 963 A++ A+ F + ++ Y +P L E++ L +Y++ Sbjct: 854 VAIEHAELMN----------FSL------HVQPKYVHAEPLSLIDQLKYEKQWLNVYVSP 897 Query: 964 HPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRS 1023 HP+ + + G R+ + V TK+G + T+ D S Sbjct: 898 HPVESFSHFYSMW-GAKRMYEWTKENVNHG-KVIVYVEEVTRKRTKKGEEMAFVTICDDS 955 Query: 1024 GRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARG 1083 + ++F + ++ LL++ IL + G++ S G + ++V + Sbjct: 956 DEWQAVVFPTSYRRFHDLLQQGSILYMEGKIE--QRSSGWHLIVQQV--------RKPVC 1005 Query: 1084 LAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLL 1143 + I + ++ +L +L+ L HR G PV LYY+ R +++ + VSP+D + Sbjct: 1006 VYIKIDEQHASPVVLKQLKDVLTAHR-GHAPVILYYETE--RKKVQLSHEYAVSPNDVCI 1062 Query: 1144 NDLRGLIGSEQVELE 1158 L L+G V ++ Sbjct: 1063 RQLVTLLGDGNVAVK 1077 >UniRef50_A6DMI0 DNA polymerase III, alpha subunit n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DMI0_9BACT Length = 1223 Score = 1093 bits (2827), Expect = 0.0, Method: Composition-based stats. Identities = 412/1155 (35%), Positives = 635/1155 (54%), Gaps = 42/1155 (3%) Query: 17 MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVQCDL 76 M+ L+K+ G A A+TDF N+CG + F A IKPI+G + Sbjct: 1 MLQSACTMPALIKRLEEGGFEAAALTDFANMCGSIAFTNGLKKANIKPILGCYTYLNNSR 60 Query: 77 LGD-----ELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEGLILL 131 + L +LA NN GYQNL + ++++ + P IDR +L + +EG+I + Sbjct: 61 TQNPSNMSSFNGLILLAKNNVGYQNLCKINAQSHLESFH-IKPRIDRSFLRQYSEGIIAI 119 Query: 132 SGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRTGRPDEESYLHAAVELAE 190 + D+ L + + FY + F + ++LE+ + R ++ ++LA+ Sbjct: 120 APFHDSDIASDLSKNIDPT--NALNFYVDIFGKENFYLEIQKHKREGDDEKYPLVLQLAK 177 Query: 191 ARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELF 250 + +VA+ V + ++ H+I + + T+ DP++ R Y+ EEM LF Sbjct: 178 DNEIGLVASQTVYYPEAKMAIPHDIVCCVGE-KTVHDPQKLRFPEKNYYLHLPEEMEGLF 236 Query: 251 ADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTED-YLVKRAKEGLEERLAFLFP 309 +D+PEAL NT +IA +C+V E P +P D T+ +L++ GL+ER Sbjct: 237 SDVPEALENTRKIANQCDVAFDTSE-HYPVYPMSDDRTQQQFLLEICVGGLKERYGLDHK 295 Query: 310 DEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSL 369 + +++ R E ER + EL VI++ G+ YFL+V +FI WSK N +PVGPGRGSGAGS+ Sbjct: 296 NPKDQ--REKEIVERTDFELGVIHKSGYDSYFLVVWDFINWSKTNDIPVGPGRGSGAGSI 353 Query: 370 VAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQ 429 VAY IT++DP++++LLFERFLNPER+S PDFD+DFC +R +VI++V YG + V+Q Sbjct: 354 VAYLTGITNIDPIKYNLLFERFLNPERISPPDFDIDFCERRRPEVIDYVRKKYGSEKVAQ 413 Query: 430 IITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAF----EAEPQLPEIY 485 I T+GTM AKAVI+DV R LG+ + D+I+KLIP D +TL KA +L + Sbjct: 414 IGTYGTMKAKAVIKDVTRALGYEHTRADQITKLIPEDLKITLHKALFDPKIKSEELIALN 473 Query: 486 EADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSD 545 +++E VK +ID A LEG+ RN G HA GV+I ++T+ PL G+ VTQF Sbjct: 474 DSEEWVKQIIDNAMPLEGLNRNMGIHACGVIIGDQELTNLIPLISGANGE-VVTQFSAGP 532 Query: 546 VEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSET 605 E GL+K DFLGLRTLT+I L +I + N + +DI AIP+DD++++ + Q +T Sbjct: 533 CEDLGLLKMDFLGLRTLTLIKDTLGLIKE----NHDIEIDIEAIPIDDRRTYKLFQEGKT 588 Query: 606 TAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPD 665 TAVFQ ES GM+ +K LQP F D+IA+ AL+RPGP+ + +FI+RKHGREEI+Y Sbjct: 589 TAVFQYESAGMQKYMKELQPTVFPDLIAMNALYRPGPIA--YIPSFIERKHGREEITYDC 646 Query: 666 VQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRS 725 E + L+ TYGI +YQEQVM ++Q L +T G AD LR+AMGKKK + +A+ + Sbjct: 647 -----EGMDEYLQETYGITVYQEQVMLLSQKLGNFTKGEADTLRKAMGKKKMDLLAQLKP 701 Query: 726 VFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAA 785 F + E NG + + + ++ E FA Y FNKSHS YA V+YQT +LKAHYPAEFMAA Sbjct: 702 KFLDQGEGNGHDRKKLEETWEKWEAFASYAFNKSHSTCYAWVAYQTAYLKAHYPAEFMAA 761 Query: 786 VMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGP 845 VMT+++ N +KV ++EC +GLK+LPP+IN F V ++G I + +GAIKGVG Sbjct: 762 VMTSELGNADKVTFFLEECRNLGLKVLPPNINKSKVTFSV-ENGAIRFALGAIKGVGTSA 820 Query: 846 IEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDA 905 E I+ R + G + +LC R ++R+VLE +I SG D G R+AL + A Sbjct: 821 SETIVRIRKE-GEYESFMNLCERVGHTNVSRKVLEGIIASGGMDEFGNKRSALTQFIDRA 879 Query: 906 LKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHP 965 L+ + A A+GQ +F + E S W + LD E+ LG Y TGHP Sbjct: 880 LEHSSSKANDLAMGQMSLFAEVEEVNTISPDD--SMPEWDLRYKLDMEKTLLGFYATGHP 937 Query: 966 INQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGR 1025 + ++ + I+++ +E V ++ + TK+G +D S Sbjct: 938 VGEHKQLIKKFSSNSITGLKKQSEDRAVARLGVMISNLNLRKTKKGKTFASFNAEDLSDG 997 Query: 1026 LEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLA 1085 +E + + D+ + L+ + +++ + S + + ++ R + I E+ + Sbjct: 998 IECICW--DYDQNSEALKDNSTILIEAEFSREPRT---QLIVRNAIPIHESVSAHTEQTL 1052 Query: 1086 ISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLND 1145 I L + ++D + ++ ++ + V+ Y QR + LR + + Sbjct: 1053 IILDESKLDQEKESQFKELCSKNIG---IVNDYEQRLLTQTALRMVHKSQKDLIPKFEKY 1109 Query: 1146 LRGLIGSEQVELEFD 1160 LR L+ + Sbjct: 1110 LRDTFLQNSNRLQLE 1124 >UniRef50_Q9Z7N8 DNA polymerase III subunit alpha n=16 Tax=Chlamydiales RepID=DPO3A_CHLPN Length = 1240 Score = 1093 bits (2826), Expect = 0.0, Method: Composition-based stats. Identities = 428/1243 (34%), Positives = 659/1243 (53%), Gaps = 121/1243 (9%) Query: 7 VHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIV 66 + L HS YS++D ++ V K G+PALA+TD NL G V FY GI+PI+ Sbjct: 4 IPLHCHSQYSVLDAMSSIKDFVAKGQEFGIPALALTDHGNLYGAVDFYKECTQKGIQPII 63 Query: 67 GADFNVQCDLLGDEL--------THLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDR 118 G + + D+ HL +L N GY+NL +L S A+ G+ P ID+ Sbjct: 64 GCECYIAPGSRFDKKKEKRSRAAHHLILLCKNEQGYRNLCILTSLAFTEGF-YYFPRIDK 122 Query: 119 DWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPD- 177 D L + +EGLI LSG V + L+ AL+ E + ++++ F D YF E+ + Sbjct: 123 DLLRQYSEGLICLSGCLSSSVSDAALKSPEALLLE-LQWFQDLFKDDYFTEVQLHKMSEE 181 Query: 178 --------------------EESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRV 217 + A +E ++ G+P VATND+ +I+++D+ AHEI + Sbjct: 182 SIAGFKEEWLKQEYYSLIEKQIKVNTAVLEASKRLGIPTVATNDIHYINANDWQAHEILL 241 Query: 218 AIHDGFT---------LDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCN 268 + G T + +PKR S + Y +S +M ELF DIPE ++NT+E+AKRC+ Sbjct: 242 NVQSGETVRIAKQNTHIPNPKRKVYRSREYYFKSPAQMAELFKDIPEVISNTLEVAKRCD 301 Query: 269 VTVRLGEYFLPQF-PTGDMSTEDY------------LVKRAKEGLEERLAFLF----PDE 311 T + P + P + Y L + A+E L ++ + + Sbjct: 302 FTFDFSKKHYPIYVPESLKTLNSYTEEDRYQASAVFLKQLAEEALPKKYSSEVLAHIAKK 361 Query: 312 EERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVA 371 ER++ E+ +I G Y LIV + I W+K NG+PVGPGRGSGAGS++ Sbjct: 362 FPHRDPIDIVKERMDMEMAIIIPKGMCDYLLIVWDIIHWAKANGIPVGPGRGSGAGSVLL 421 Query: 372 YALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQII 431 + L IT+++P+ FDL FERF+NPER+S PD D+D CM R++VI + + +G+D V+QII Sbjct: 422 FLLGITEIEPIRFDLFFERFINPERLSYPDIDIDICMAGRERVINYAIERHGKDNVAQII 481 Query: 432 TFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEV 491 TFGTM AK ++DVGR L V+ I+K IP D TL+KA E +P L ++Y D E Sbjct: 482 TFGTMKAKMAVKDVGRTLDMALSKVNHIAKHIP-DLNTTLSKALETDPDLHQLYINDAES 540 Query: 492 KALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGL 551 +IDMA LEG RN G HA GV+I ++T+ P+ ++ TQ+ VE G+ Sbjct: 541 AQVIDMALCLEGSIRNTGVHAAGVIICGDQLTNHIPICISKDSTMITTQYSMKPVESVGM 600 Query: 552 VKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQL 611 +K D LGL+TLT IN A+ I K+ ++ L +A +PLDD +F +L + +T +FQ+ Sbjct: 601 LKVDLLGLKTLTSINIAMSAIEKKTGQS----LAMATLPLDDATTFSLLHQGKTMGIFQM 656 Query: 612 ESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHE 671 ES+GM++L K L+PD FE++IA+ AL+RPGP+ M+ +FI+RKHG+E I Y H Sbjct: 657 ESKGMQELAKNLRPDLFEEIIAMGALYRPGPMD--MIPSFINRKHGKEIIEY-----DHP 709 Query: 672 SLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGA 731 ++ +L+ TYGI++YQEQVMQIA L+ Y+LG D+LRRAMGKK ++M ++R F + A Sbjct: 710 LMESILKETYGIMVYQEQVMQIAGALASYSLGEGDVLRRAMGKKDFQQMEQEREKFCKRA 769 Query: 732 EKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADM 791 NGI+ ELA IFD +EKFA YGFNKSH+AAY L++Y T +LKA+YP E++AA++T D Sbjct: 770 CNNGIDPELATVIFDKMEKFAAYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDS 829 Query: 792 DNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIE 851 D+ EK+ L+ E MG+ ILPP IN HF D+G I + +GAIKG+G G IE+I+E Sbjct: 830 DDIEKIGKLIREAQSMGIPILPPHINVSSNHFVATDEG-IRFAMGAIKGIGRGLIESIVE 888 Query: 852 ARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQ 911 R+ G + + D R+D KK++++ +E LI +G FD +R L+ S+ +A + Sbjct: 889 ERDHHGPYESIRDFIQRSDLKKVSKKSIESLIDAGCFDCFDSNRDLLLASVEPLYEAIAK 948 Query: 912 HAKAEAIGQADMF--GVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQY 969 K A G F G + + E ++ +L E+E LG+YLT HP++ Sbjct: 949 DKKEAASGVMTFFTLGAMDRKNEVPICLPKDIPTRSKKELLKKEKELLGIYLTEHPMDTV 1008 Query: 970 LKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMV-TKRGNRIGICTLDDRSGRLEV 1028 + R + V + G V+ ++ + +K + + + D E+ Sbjct: 1009 RDHLSR-LSVVLAGEFENLPHGSVVRTVFIIDKVTTKISSKAQKKFAVLRVSDGIDSYEL 1067 Query: 1029 MLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYA------- 1081 ++ D ++ Q+LLE+DR ++ + D S L+++ R + D+ E Sbjct: 1068 PIWPDMYEEQQELLEEDR--LIYAILVLDKRSDSLRISCRWMKDLSIVNENIIYECDQAF 1125 Query: 1082 -------------------------------------RGLAISLTDRQIDDQLLNRLRQS 1104 + +SL ++ L L++ Sbjct: 1126 DRIKNQVQKMSFTMSTSGKETKAKGNKPNENGHTQALAPVTLSLDLNELRHSHLCILKKI 1185 Query: 1105 LEPHRSGTIPVHLYYQRADARARLRFGATWRVSPS-DRLLNDL 1146 ++ H V ++ Q + A + + V + L +L Sbjct: 1186 VQKHPGSRTLVLVFTQDNERVASMSPDDAYFVCEDIEELRQEL 1228 >UniRef50_A5TY39 DNA-directed DNA polymerase III alpha subunit n=10 Tax=Fusobacterium RepID=A5TY39_FUSNP Length = 1133 Score = 1091 bits (2821), Expect = 0.0, Method: Composition-based stats. Identities = 399/1162 (34%), Positives = 655/1162 (56%), Gaps = 39/1162 (3%) Query: 3 EPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGI 62 E FVHL +H++YS+ +G+ + KA LGM +LA+TD+ N+ ++FY GI Sbjct: 2 ENNFVHLNLHTEYSLSEGVNSIDSFLVKAKELGMTSLAVTDYANMFCAIEFYQKAKKMGI 61 Query: 63 KPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLI 122 KPI+G + + + + LT+LA N GY+NL L S+ Y+ ++++ L Sbjct: 62 KPIIGLELPISNRDEQN-IFSLTLLAKNYNGYKNLVKLASELYKNNENRELK-LNKEILK 119 Query: 123 ELNEGLILLSGGRMGDVGRSLLRGNSAL-VDECVAFYEEHF-PDRYFLELIRTGRPDEES 180 E ++ LI LS G++G+++L +S V++ + Y E F + ++LE+ + + Sbjct: 120 EHSQDLIALSSSMNGEIGKAILTNSSDEKVNKIIDEYIEIFSKENFYLEIQANELSETKI 179 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 +LA+ L +VATN+V ++D ++ +I + I G + + R R S + Y+ Sbjct: 180 INDRFYDLAKFHDLELVATNNVYYVDRDGYELQDIIICIQSGLKVKEKNRKRAISKELYL 239 Query: 241 RSEEEMCELFAD-IPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMST--EDYLVKRAK 297 +S++EM + +A+ N IA CNV + G P + + ++YL Sbjct: 240 KSKDEMKRFLGEKFEKAIENANYIADLCNVEIGFGNLQFPYYEVPSEYSGMDEYLKTICH 299 Query: 298 EGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVP 357 +++ + +RLE EL VI +MG+ GYF++V +FI ++K G+P Sbjct: 300 TNIKKLYKEDL---------TKDILDRLEYELSVIIKMGYSGYFIVVWDFISYAKRRGIP 350 Query: 358 VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEH 417 VGPGRGS AGSLVAY L IT +DP+ ++LLFERFLNPER+SMPD D+D C E+RD++I++ Sbjct: 351 VGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERISMPDIDIDICRERRDELIDY 410 Query: 418 VADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEA 477 V YGRD V+ IITFG M A+A IRD+GRVL +D++SKL+ P L K + Sbjct: 411 VVHKYGRDRVAHIITFGRMKARAAIRDIGRVLDIDLKKIDKLSKLVSPFQA--LEKTLKE 468 Query: 478 EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHP 537 ++ ++Y D E++ +ID+A ++E R+ HA G++I + P+Y DE+ Sbjct: 469 NVEVAKLYTTDIELQKVIDLAIRIENTVRHVSTHAAGILITKEDLDKTVPIYLDEKEGVI 528 Query: 538 VTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSF 597 TQ+ ++E GL+K DFLGL+ L+ I ++ I K + + +D+ IPLDDKK F Sbjct: 529 ATQYQMKELEELGLLKIDFLGLKNLSNIQRTIDYIKKYKNVD----IDLYKIPLDDKKVF 584 Query: 598 DMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHG 657 ML ++T VFQLES G++ ++KRL+PD FED++AL+AL+RPGPLQSGMVD+FI+RK+G Sbjct: 585 HMLSLGDSTGVFQLESPGIRKIMKRLKPDKFEDIVALLALYRPGPLQSGMVDDFINRKNG 644 Query: 658 REEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKP 717 +E+I YP H++L+ +L+ TYG+ILYQEQVM+IA ++ Y+LG AD+LRRAMGKK Sbjct: 645 KEKIEYP-----HKNLEIILKETYGVILYQEQVMKIASYMADYSLGEADLLRRAMGKKNF 699 Query: 718 EEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAH 777 M + R F E A NG E + +IF+L++KFAGYGFNKSHS AYA++SY T + KA+ Sbjct: 700 AIMRENREKFIERAIHNGYTVEKSEEIFELIDKFAGYGFNKSHSVAYAMISYWTAYFKAY 759 Query: 778 YPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGA 837 YPA + AAVMT+++ T + ++ G+++ P++NS +F V ++G I Y + A Sbjct: 760 YPAFYYAAVMTSEISETGDIAYYFNDAKEHGVRVYSPNVNSPSAYFEVKNEG-ITYSLAA 818 Query: 838 IKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAA 897 IK G + I+E G + L + R +N+R LE LI+SGA D + +R Sbjct: 819 IKNFGLTMAKKIVEDVKLNGKYTTLEEFVFRNKKNGMNKRALEALILSGALDEIKGNRKE 878 Query: 898 LMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETL 957 S+ L + + K + I Q ++FG A+ ++ + + + + L+ E+E L Sbjct: 879 KFLSIDKVLDYSSKAPKTDEIQQMNLFGAAAKTIDKFNLAIS--EDFTLDEKLNKEQEFL 936 Query: 958 GLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGIC 1017 G YL+ HP+++Y + + +L + E +VI G + + +TK+ ++ + Sbjct: 937 GFYLSSHPLDRYKDILTTF-SIKKLSEF-DLEGNQVIKTFGTITNLKKTITKKEEQMAMF 994 Query: 1018 TLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGG--LKMTAREVMDIDE 1075 L + + F +++ + + + + + G++ D++ G K+ ++M++D+ Sbjct: 995 NLSCYDRTISCIAFPRVYERFITEIIEKKTVYIEGKIQIDNYKGESTSKLLVDKLMELDK 1054 Query: 1076 AREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWR 1135 E A+ L I + D +RL+ + G + + D + Sbjct: 1055 IFEYPAKKLFILIEPE--DSYRYSRLKDLI-NFNKGKTQIVFAIKNKDEKKLQTMNKG-- 1109 Query: 1136 VSPSDRLLNDLRGLIGSEQVEL 1157 V S +L L+G +++++ Sbjct: 1110 VKLSKDFFENLIELMGIDKIKI 1131 >UniRef50_B3XXI1 Putative DNA polymerase III, alpha subunit n=1 Tax=uncultured bacterium RepID=B3XXI1_9BACT Length = 1317 Score = 1088 bits (2814), Expect = 0.0, Method: Composition-based stats. Identities = 397/1145 (34%), Positives = 618/1145 (53%), Gaps = 88/1145 (7%) Query: 1 MSEP-RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59 MS+ FVHL VHS+YS++DGL++ LV++A LG PA+A+TD + G + FY A Sbjct: 1 MSDQGTFVHLHVHSEYSLLDGLSRINDLVERAVELGQPAIALTDHGAMYGTMPFYRACKS 60 Query: 60 AGIKPIVGADFNVQCDLLGD-------ELTHLTVLAANNTGYQNLTLLISKAYQRGYGAA 112 G+KPI+G + + + D E H+ +LAAN TGY NL + S+A GY Sbjct: 61 GGVKPIIGIETYLAMRSMQDKDAQRDKERFHMLMLAANQTGYMNLLEVASRAQLDGY-YY 119 Query: 113 GPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELI 171 P IDR+++ +EG+I +G ++ R++ GN AL D+ + Y + F DR F+EL Sbjct: 120 KPRIDRNFMAAHSEGIIATTGCMAAEIPRAIGAGNMALADKLMGEYVDIFGTDRLFVELQ 179 Query: 172 RTGRPDEESYLHAAVELAEARGLP--VVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPK 229 P+ + +E+A GL +ATNDV + ++D + HE+ + I G T++ PK Sbjct: 180 EHSIPELTTINQKLIEMAPRFGLQNNFLATNDVHYTRAADANPHEVLLCIQTGSTVNAPK 239 Query: 230 RPRNYSPQQYMRSEEEMCELFA--DIPE-----ALANTVEIAKRCNVTVRLGEYFLPQFP 282 Y++S +EM LF PE +L N++ I + C+V + Y LP+F Sbjct: 240 -LTFSDKGYYLKSYDEMFNLFRQNGYPEDIVLNSLRNSLAIVEMCDVNLDSKGYHLPEFD 298 Query: 283 TGDM-STEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYF 341 + YL ++GL R EER + + RLE EL +I +MGF YF Sbjct: 299 VPEGYDAHGYLRHLCEQGLIWRYG------EERARNDEDLRARLEHELNIITRMGFDTYF 352 Query: 342 LIVMEFIQWS----------------------KDNGVPVGPGRGSGAGSLVAYALKITDL 379 LIV + +W+ K++ + RGSGAGS+VAY L IT + Sbjct: 353 LIVWDLCEWAVRSDAWWETHGDPYPYESYTDWKEHDIW-WNVRGSGAGSVVAYTLGITSI 411 Query: 380 DPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAK 439 DPL L+FERFLNP RVSMPD D+D+ + R Q++ + YG + V+QIITFGTM A+ Sbjct: 412 DPLVNGLIFERFLNPGRVSMPDIDLDYPDDVRGQMVAYTKRRYGEEKVAQIITFGTMGAR 471 Query: 440 AVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE-----PQLPEIYEADEEVK 492 A IRDVGR L P VD +++L+P PG + + + + +L + Y+ + VK Sbjct: 472 AAIRDVGRALDMPLPDVDGVARLVPAIPGKPVKIKNVLDPDHEFYSAELTDRYKRESAVK 531 Query: 493 ALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKH------PVTQFDKSDV 546 L+D A LEGV R+A HA GV+++ + ++ PL G VTQ+ V Sbjct: 532 TLLDTATNLEGVARHASSHAAGVIVSDRPLQEYVPLNRPTSGDEGLGGVDRVTQWPMEIV 591 Query: 547 EYAGLVKFDFLGLRTLTIINWALEMINKRRAK---NGEPPLDIAAI---PLDDKKS-FDM 599 E GL+K DFLGL TLT++ A +I +R P D I P D + FDM Sbjct: 592 ESIGLLKVDFLGLSTLTVMRRAARLIEERYGTVYTMDNIPYDEGHIGPDPERDPELLFDM 651 Query: 600 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 659 L R + VFQ+E GM+ L+ ++P F+ +IA ++L+RPGP+++ + +I R H Sbjct: 652 LGRGDVAGVFQVEGAGMRRLMMEMKPRRFDHIIAAISLYRPGPMEN--IPEYIRRMHSSI 709 Query: 660 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 719 + V++ +L+P+L+ TYGI++YQEQ+++IA L+GY G ADM+R+A+ KKK + Sbjct: 710 YDNKDIVEYHTPALEPILKDTYGILVYQEQIIRIASDLAGYAPGDADMIRKAVAKKKKKL 769 Query: 720 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 779 M + R F EGA + G + E+ I+ +E FA YGFNK+H+A YA V+ QT +LKAHYP Sbjct: 770 MEEHRIKFTEGAMERGFSREVCEAIWGDIEFFARYGFNKAHAADYAKVTCQTAFLKAHYP 829 Query: 780 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGE---IVYGIG 836 E++AA+++ + DNTEKV E +G+ I PPDIN F + DD E I +G+G Sbjct: 830 VEYLAAMLSVERDNTEKVRRYFAEAKNLGIDIEPPDINRSDLDFTIEDDHERPCIRFGLG 889 Query: 837 AIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRA 896 AIK GE + I++ R G F +L DL R D +++ +R LE +I + F+R G Sbjct: 890 AIKNAGEAALNLILDERRANGTFADLQDLSERVDLRRVGKRALEFMIKARVFERWG-TMP 948 Query: 897 ALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIE---------QSYASCQPWPEQ 947 + +L + + + +A A GQ +FG L + S +P P + Sbjct: 949 QFLEALDRIVADSSKTHEAAAAGQMSLFGALGGSNGGNGGMKLTADLLKPVDSLEPIPHK 1008 Query: 948 VVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMV 1007 +L+ E+E LG++++ HP+ + L + + + + T GK + AG++ R + Sbjct: 1009 QMLEWEKEALGVHVSEHPMERPLAMLTSHTSA-TIGGLDITMNGKQVRIAGMISTLRTLT 1067 Query: 1008 TKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTA 1067 TK+G+ + TL+D +++++LF + + D++++V+G+V L + Sbjct: 1068 TKKGDPMAFATLEDMDNKIDLVLFPRTWKATRDQVVVDQVMLVTGKVQVK--GEDLNLIV 1125 Query: 1068 REVMD 1072 + Sbjct: 1126 DSIST 1130 >UniRef50_C3JBN3 DNA polymerase III, alpha subunit family n=2 Tax=Bacteria RepID=C3JBN3_9PORP Length = 1251 Score = 1087 bits (2811), Expect = 0.0, Method: Composition-based stats. Identities = 401/1218 (32%), Positives = 613/1218 (50%), Gaps = 137/1218 (11%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG--- 61 FVHL VHS +S++DG A + LVKKA GMP +A+TD + G+ F+ + Sbjct: 3 PFVHLHVHSQFSILDGQASVSALVKKAIGDGMPGIALTDHGVMFGIKTFFDECNKVNSKH 62 Query: 62 ------------------------------------------IKPIVGADFNVQCDLLGD 79 KPI G + D Sbjct: 63 RSRISALKKEIKELQKKESPTPEDKEEIEKLEQEISEVERQMFKPIFGCEAYCARRTRFD 122 Query: 80 E-----------------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLI 122 + HL +LA N GY NL ++S ++ G P ID+D L Sbjct: 123 KDKDVPDPYNPSRSIDRSGWHLILLAKNKQGYLNLCKMVSASFTEG-EYYRPRIDKDLLE 181 Query: 123 ELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPD----- 177 + +EG+I++S G+V + +L G+ +E V +++ F + Y+LE+ D Sbjct: 182 QYHEGVIVMSACLGGEVPQHILGGHPERAEETVRWFKNIFGEDYYLEVQLHQTDDPNANR 241 Query: 178 -----EESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 + + ++AE G+ VVATNDV F++ D AH++ + + LDDP+R R Sbjct: 242 ETFVQQLAVNEVIYDIAERTGVKVVATNDVHFVNQEDATAHDMLICLGTKRDLDDPQRMR 301 Query: 233 NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM--STED 290 YS Q++++++EEM +FAD PE L+NT+EI + +P FP + + Sbjct: 302 -YSQQEWLKTQEEMNAVFADRPELLSNTLEILNKVEFYTIENPALMPDFPLPEGFDDADK 360 Query: 291 YLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQW 350 YL EG + R P+ E ER++ EL I MGFPGYFLIV + IQ Sbjct: 361 YLQHLTYEGAKMRYGDPIPE---------EVKERIDFELNTIKSMGFPGYFLIVQDLIQA 411 Query: 351 SKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEK 410 ++D GV VGPGRGS AGS VAY LKIT+LDPL++ LLFERFLNP+R+S+PD D+DF Sbjct: 412 ARDMGVCVGPGRGSAAGSAVAYCLKITNLDPLKYGLLFERFLNPDRISLPDIDIDFDDSG 471 Query: 411 RDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP--- 467 R ++++ + YG V+QIITFG M AK+ I DV R+ P RI+KLIP Sbjct: 472 RAKILQWATEKYGHKNVAQIITFGEMKAKSSIADVARLKHIPVEESRRITKLIPDKFSDS 531 Query: 468 ----------------GMTLAKAFEAEPQLPEI-YEADEEVKALIDMARKLEGVTRNAGK 510 +T+ + P+L ++ ++ +++ A+KLEG RN G Sbjct: 532 DMELIHKTPGYENAKGNVTIELSTLVVPELKKLQVGSNTQIQDTFKYAQKLEGSIRNIGV 591 Query: 511 HAGGVVIAPTKITDFAPLYCD---EEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINW 567 HA GV+I I+D P+ K +TQ++ +E GL+K DFLGL+TL+II Sbjct: 592 HACGVIIGKYDISDVIPISTSFDENGEKVLITQYEGKVIESTGLIKMDFLGLKTLSIIRE 651 Query: 568 ALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDC 627 LE + R K+ +DI IPLDD+K+F + +FQ ES GM+ ++ LQPD Sbjct: 652 GLENVKHRFHKD----IDIDHIPLDDEKTFKLFCEGRMVGIFQFESAGMQKYLRELQPDR 707 Query: 628 FEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQ 687 FE +IA+ AL+RPGP++ + +I R+HGREEI Y K +LE T+G+ +YQ Sbjct: 708 FELLIAMNALYRPGPMK--YIPQYIARRHGREEIIYDV-----PETKEILEETFGVTVYQ 760 Query: 688 EQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDL 747 EQVM +++ L+ +T G +D LR+AMGKKK EEM K ++ F +G +NG + E+ KI+ Sbjct: 761 EQVMLLSRSLANFTRGQSDSLRKAMGKKKIEEMEKLKADFLKGGVENGHSKEVLEKIWMD 820 Query: 748 VEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRM 807 E FA Y FNKSH+A Y+ ++YQT +LKAHYP+EFMA ++ ++ N ++ L+ EC M Sbjct: 821 WEDFAKYAFNKSHAACYSWLAYQTAYLKAHYPSEFMAGNLSCNLSNAPEIAKLMKECKAM 880 Query: 808 GLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCA 867 G+++L PD+N + F VN +G+I +G+ IKGV + I+ +IE R + G F ++D A Sbjct: 881 GIRLLSPDVNESMQKFSVNSNGDIRFGLSGIKGVNQTTIDKLIEDREQNGPFTSIYDFVA 940 Query: 868 RTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMN---------SLGDALKAADQHAKAEAI 918 R + +NR+ +E +SGAFD G R + + L + + Sbjct: 941 RIPRQFINRKTMEAFALSGAFDSFGIERESFFAPPVNSREDSFIATLLAYGRIVQEESSS 1000 Query: 919 GQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVG 978 +FG +EE E +PW L E E +G+Y++ +P+ Y +++ Sbjct: 1001 QSMGLFGE-SEELSIPEPEVPQAEPWNNLTKLSKEYELVGIYISSNPLEPYRLILDKLCT 1059 Query: 979 G---VRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDAL 1035 K + + AGLV +TK G TL+D SG E LF Sbjct: 1060 VKLDDLDKKDLEEFKDTRMVFAGLVTNVMEGLTKTNKPYGRFTLEDLSGSHEFALFGKQY 1119 Query: 1036 DKYQQLLEKDRILIVSGQVSFDDFS-----GGLKMTAREVMDIDEAREKYARGLAISLTD 1090 +Y+ L+ + LI V F ++ + + + + + + + Sbjct: 1120 LEYKHFLKTEIFLICHASVKLWQFKKPDEPERFDLSFNSIELLTDEYYSSIKEVELFIPY 1179 Query: 1091 RQIDDQLLNRLRQSLEPH 1108 ++ID+ + ++ H Sbjct: 1180 KEIDELFVKEFITEIDAH 1197 >UniRef50_UPI0001C42452 DNA polymerase III alpha subunit n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42452 Length = 1117 Score = 1081 bits (2795), Expect = 0.0, Method: Composition-based stats. Identities = 400/1159 (34%), Positives = 635/1159 (54%), Gaps = 54/1159 (4%) Query: 8 HLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVG 67 H V+S+YS++ + LV KA G ALA+TD N+ V FY A GIKP++G Sbjct: 5 HTNVYSEYSLLSSTNRIKELVSKAKETGFTALALTDKGNMFAAVPFYKACLETGIKPVIG 64 Query: 68 ADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEG 127 + ++ + L +LA N TGY++L + + AG + D +N+ Sbjct: 65 LEIPIK---DNEHSGSLRLLAKNTTGYKSLLKISTLLQTEDNLRAG-LAPDDLRSRINDC 120 Query: 128 LILLSGGRMGDVGRSLLRGNSALVDEC-VAFYEEHFPDRYFLELIRTGRPDEESYLHAAV 186 LI++ + + + G E V + + ++++L G D ES+ AV Sbjct: 121 LIII--PYDSPMHQLIKAGEVEAAKEWCVRWITRSKKEDWYIDL--AGNADRESHHWEAV 176 Query: 187 -ELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 245 + A L + +N VRF +++A+ AI +G T+ + + Y++S+EE Sbjct: 177 SQFASRYNLKLCGSNPVRFTSKENYEAYAAVRAIREGKTIH-LQDEGHAERSFYLKSKEE 235 Query: 246 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFP-TGDMSTEDYLVKRAKEGLEERL 304 + + F+ +P AL+ EI ++CN+T+ L +LP +P T ++ L K EG +R Sbjct: 236 LKQSFSPVPAALSGLGEIVEQCNITIDLDRRYLPAYPFTKSEPAKEVLKKACLEGANKRF 295 Query: 305 AFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGS 364 D E RLE EL VI+QMGF YFLIV +F+Q ++ + GPGRGS Sbjct: 296 NHTITD---------EVRRRLEKELAVIDQMGFNDYFLIVADFMQHARKRNMMTGPGRGS 346 Query: 365 GAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGR 424 AGSL AY L ITD++PL++DLLFERFLNPER+S+PD D+DF +RD+VI++V + YG Sbjct: 347 AAGSLTAYVLYITDVNPLKYDLLFERFLNPERISLPDIDIDFPDHRRDEVIQYVQEKYGP 406 Query: 425 DAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEI 484 D V+QI TFGT+AA+A IRD G+ L +++++KLIP PG+T+ KA E E L +I Sbjct: 407 DHVAQIATFGTLAARAAIRDTGKALSCDSFLIEKVAKLIPSTPGITIKKAMEQERGLQQI 466 Query: 485 YEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKS 544 E+ L+ +A +EG+ R+ HA GVVI+P +T+ L + G +TQ Sbjct: 467 RNDSEDANKLLSIAESIEGLMRHVSTHAAGVVISPVPLTELVALQKGQ-GPVRLTQATMG 525 Query: 545 DVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSE 604 VE GLVKFDFLGLR LT++ L +I + + +DI +IP DD K++++L + Sbjct: 526 IVEDIGLVKFDFLGLRNLTLLERVLSIIEQESGRR----VDIHSIPWDDVKTYELLANGD 581 Query: 605 TTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYP 664 TT VFQLES+GM+ +++ L P FED++A+ AL+RPGP+ + +I+ KH + I+ Sbjct: 582 TTGVFQLESQGMRRVLRSLMPTEFEDIVAVNALYRPGPMD--YIQVYINGKHKKAPIN-- 637 Query: 665 DVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQR 724 HE L P+L TYG+I+YQEQ+MQIA ++G++L AD+LRRA+ KK ++ K R Sbjct: 638 ---DIHEELTPILGKTYGVIVYQEQIMQIAVKMAGFSLARADLLRRAISKKNKADLEKSR 694 Query: 725 SVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMA 784 F +GA++ G N ++A K+F L+E+FA YGFN+SH+ AY+++SYQ +LKAH+P F Sbjct: 695 GDFLKGAKEKGYNEDIANKVFQLIERFANYGFNRSHAVAYSMISYQLAYLKAHFPTAFYT 754 Query: 785 AVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDG-EIVYGIGAIKGVGE 843 A++++ + EK+ L+ E + + I+PP I+ F + D G + +G+ + VG Sbjct: 755 ALLSSVWNTPEKLTELLQETKKRKIDIMPPSISKSGLLFTLEDHGHTVRFGLLPVSHVGV 814 Query: 844 GPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLG 903 + II+ + +++LFD C R + + +NRR E LI +GA D G RA L+ +L Sbjct: 815 QAAKHIIDTAREA-PYKDLFDYCVRVNQRIVNRRATENLIKAGAMDEWGEDRATLLYNLD 873 Query: 904 DALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTG 963 A A++ + A +F + E P+ Y P Q L E+E LG+Y++G Sbjct: 874 QAYSFAEKVLSFQDE-MAGLFTLDIETPQ-----YEHVDPLSLQEKLSFEQEALGVYVSG 927 Query: 964 HPINQYLKEIERYVGGVRLKDMHPT--ERGKVITAAGLVVAARVMVTKRGNRIGICTLDD 1021 HPI Q + +Y + + + K + AG+V + + + TK+G+ + D Sbjct: 928 HPIEQVSDVLAKYQRVLIADMIQDQKGQERKRLRIAGMVSSLKKITTKKGDPMAFLEAAD 987 Query: 1022 RSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDE--AREK 1079 SG EV++F D +Y+ ++ + +L + G +FD + + + I A + Sbjct: 988 ESGHCEVVVFPDVWKEYETMIREGELLFMEG--AFDHTRDKPQFLLKRSVLIQSIVAASR 1045 Query: 1080 YARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPS 1139 + L + L D L +++ L G V Y ++ R ++ + V PS Sbjct: 1046 KEKVLYLKLK----DQSQLPDVKKLLIGDE-GATKVITYLEKE--RQTIQMQPVYEVGPS 1098 Query: 1140 DRLLNDLRGLIGSEQVELE 1158 + +N L L+G EQV L+ Sbjct: 1099 EECMNHLMELLGREQVVLK 1117 >UniRef50_Q03SB6 DNA polymerase III catalytic subunit, DnaE type n=18 Tax=Lactobacillus RepID=Q03SB6_LACBA Length = 1121 Score = 1080 bits (2794), Expect = 0.0, Method: Composition-based stats. Identities = 385/1170 (32%), Positives = 607/1170 (51%), Gaps = 69/1170 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FV L+V S YS++ + LV+ A G ALA+ D + G V FY A A IKP+ Sbjct: 2 FVPLQVFSTYSLLQSTNRIDDLVQTAKKRGYTALALADKNVMYGAVAFYNACRQADIKPL 61 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 +G Q + LA N TGYQ L L S AYQ G GP+ L +L Sbjct: 62 LGLTLTAQGLNDATQAYDWVFLAQNFTGYQQLMQL-STAYQVG---GGPV----DLTQLT 113 Query: 126 EGLILLS--GGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLH 183 + L L+ ++ + A + + + + + + +L Sbjct: 114 KNLSQLTMIAPLDSEIHTLVANDQLAPAQQILHQLNDWSVGQLAIGVSPDLTAVSRDHLQ 173 Query: 184 AAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSE 243 + L++A P+VA + V +++ D A + AI G T+ DP + ++R Sbjct: 174 S---LSQATTTPLVALSPVAYLNRDDHFAVTVLRAIDAGETISDPTTEQQVQGTHWLRPA 230 Query: 244 EEMCELFADIP--EALANTVEIAKRCNVTVRLGEYFLPQFPTGDMS-TEDYLVKRAKEGL 300 E + FA++ A+ T IA VT++ + LPQFPT + + DYL +R GL Sbjct: 231 AEETQRFANVGLTAAVTMTASIAAASTVTLQFQQPQLPQFPTPNQENSRDYLRERCVAGL 290 Query: 301 EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360 + RL + Y +RL+ EL VI++MGF YFLI+ + + ++ + GP Sbjct: 291 KRRL------TANHITDATPYQQRLDHELGVIHRMGFDDYFLIIWDVMNFAHQANIQTGP 344 Query: 361 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420 GRGS AGSLVAY L IT++DPL +DLLFERFLN ER MPD D+D +R+QV+++V D Sbjct: 345 GRGSAAGSLVAYVLAITEVDPLAYDLLFERFLNEERAQMPDIDLDIPDNRREQVLQYVHD 404 Query: 421 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQ 480 YG + V+QIITFGT+AAKA +RDVGRVLG + S IP + +TL +A++ + Sbjct: 405 KYGHERVAQIITFGTLAAKAALRDVGRVLGMAPYELSDWSAAIPAELHITLQRAYDQSQR 464 Query: 481 LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQ 540 L + + L A+KLEG+ R+ HA G+V++ + D PL E + +TQ Sbjct: 465 LRNLVADSSRNQLLFATAQKLEGLPRHYSTHAAGIVLSQKPLRDLVPLQPGSE-ELLMTQ 523 Query: 541 FDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDML 600 + K VE GL+K DFLGLR L+I+ AL ++ K+ K +D+ I L+D + + Sbjct: 524 YPKDTVEAVGLLKMDFLGLRNLSILANALALVKKQTGK----IVDLNQIDLNDPATLKLF 579 Query: 601 QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE 660 ET VFQ ES G+K ++++LQPD FE + A+ AL+RPGP+++ +D FI RK+G+E Sbjct: 580 ATGETNGVFQFESSGIKRVLRQLQPDSFELVAAVNALYRPGPMEN--IDTFIRRKNGQEP 637 Query: 661 ISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM 720 ++YP ++L P+L PTYG+++YQEQVMQ+A V+ G+TLG AD+LRRAM KKK + M Sbjct: 638 VTYPA-----DALAPILGPTYGVLVYQEQVMQVASVMGGFTLGQADLLRRAMSKKKKQTM 692 Query: 721 AKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA 780 + F GA++ G +A ++F +++FA YGFN+SH+ AY+ +++Q +LKAHYPA Sbjct: 693 DAMQKQFVAGAQQRGYELAVAQRVFAYIDRFANYGFNRSHAVAYSKLAFQLAYLKAHYPA 752 Query: 781 EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG 840 F A++M + ++ K + E R G+ +LPPDIN +F++ I++G+ +IKG Sbjct: 753 AFYASLMNSVINVGAKTKVYLTEAKRHGVTVLPPDINRSTAYFNLY-HSAIIFGLSSIKG 811 Query: 841 VGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMN 900 V + ++ R++ G F++L R +K +L L+ +GAFD G +RA L+ Sbjct: 812 VRRDFLREVLAERHEHGPFKDLHQFLERIASKYRKADLLNALVYAGAFDHFGHNRAELIA 871 Query: 901 SLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLY 960 +L + + + + + G E + S L E LG Y Sbjct: 872 ALPEFISSVE------------LSGDNVELIAALAPKIKSQPDLDLMTKLSQEEAVLGAY 919 Query: 961 LTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLD 1020 L+GHP+ QY +++ R + + ++ +T V+ R + TKRG + T Sbjct: 920 LSGHPVEQY-QQLGRQLQAQAVSELTA---NTRVTVLLYVIKIRQIRTKRGEPMAFVTGS 975 Query: 1021 DRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKY 1080 D + + V +F + + + L D++++V G+V + GL++ A +V D+ K Sbjct: 976 DETADVSVTIFPNQFRQISEWLATDQVIVVRGKV---EQQRGLQIVADQVSLADQIPVKP 1032 Query: 1081 A------------RGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARL 1128 I + + D + +L Q L HR G +PV +Y + D + Sbjct: 1033 VADQHTTPTLPAGARWFIRVDQQHTDRAIAQQLAQFLTAHR-GPVPVIVYQPQTDEKRI- 1090 Query: 1129 RFGATWRVSPSDRLLNDLRGLIGSEQVELE 1158 T + +L L L+G+ + Sbjct: 1091 -LPKTQWLQADAQLKVTLEALMGTGNAIFQ 1119 >UniRef50_D0RP61 DNA polymerase III subunit alpha n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RP61_9RICK Length = 1139 Score = 1079 bits (2790), Expect = 0.0, Method: Composition-based stats. Identities = 415/1164 (35%), Positives = 647/1164 (55%), Gaps = 39/1164 (3%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS ++L++HS +S+ +G K LV + A+ + D NL G ++F Sbjct: 1 MSAEA-INLKIHSQFSICEGAIKIDKLVNYCKEHSVTAVGLCDSENLSGALEFSSQLKKE 59 Query: 61 GIKPIVGADFNVQCDLLGDELT-HLTVLAANNTGYQNLTLLISKAYQR-GYGAAGPIIDR 118 GI+P++G ++ ++ G ++ A N GY+NL L SK+Y P I+ Sbjct: 60 GIQPLIGTKIYIKENVDGKITYGTASLYAKNQIGYKNLLKLSSKSYLDLQEHDDKPNINL 119 Query: 119 DWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDE 178 + L + +EG+I+L GG L++ V ++ F D ++E+ R E Sbjct: 120 NILKKYHEGIIILIGGSFSFFSDLLVKNKDEYCFNEVKKLKDIFNDNIYIEIQRHNESHE 179 Query: 179 ESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQ 238 + ++L+ +P++ATN+V +++ ++AH+ + + + +++ R + YS Q Sbjct: 180 KQLEKKLIKLSSDTSIPLIATNEVFYLEQDSYNAHDAFICVGEKNYVNEKNRLK-YSNQH 238 Query: 239 YMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKE 298 Y + E LFAD+P+AL N + N + LP F T L +A++ Sbjct: 239 YFKKTSEFENLFADLPDALENNKNFKYKFNYFPKKSNPLLPSFSENGKDTNQILKDKAEK 298 Query: 299 GLEERLAFLFPDE----EERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDN 354 GLEERL ++ + + Y +RL E+ VI++M F GYFLIV ++I W+K N Sbjct: 299 GLEERLEKYVYPRLGATTDKDEIKKNYFDRLNYEVNVISKMKFSGYFLIVSDYINWAKSN 358 Query: 355 GVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQV 414 +PVGPGRGSGAGSLVA+ L ITDLDP+ F L+FERFLNP+R+SMPDFD+DFC E RD+V Sbjct: 359 NIPVGPGRGSGAGSLVAWCLSITDLDPIRFGLIFERFLNPDRISMPDFDIDFCQEGRDEV 418 Query: 415 IEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGM--TLA 472 I +V D Y + V+QIITFG + A+ +RD+GRVLG PYG VD++ K+IP DP +LA Sbjct: 419 INYVKDKY-PNKVAQIITFGKLQARMALRDIGRVLGLPYGRVDQLCKMIPFDPSRPLSLA 477 Query: 473 KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDE 532 ++ EP+L E + D +K LI+ A KLEG+ RN HA GVVI + + PLY D Sbjct: 478 ESIAIEPRLQEAEKNDPIIKKLINYALKLEGLYRNVATHAAGVVIGDRNLDEIVPLYKDL 537 Query: 533 EGK--HPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIP 590 PVTQFD E AGLVKFDFLGL+TLT+I +E I K +A DI+ I Sbjct: 538 SSTLPIPVTQFDMKSSEEAGLVKFDFLGLKTLTVIKKTIEFIQKDKA-----DFDISKIN 592 Query: 591 LDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDN 650 L D+K+F++L ET +FQLES GM++++K+L+P+ FED+IALVAL+RPGP+Q+ + Sbjct: 593 LSDQKTFELLSSGETMGIFQLESSGMREVLKQLKPNKFEDIIALVALYRPGPMQN--IPT 650 Query: 651 FIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRR 710 +I RKH +EE+ Y H L+ +L+ TYG+I+YQEQVMQIAQ LS ++ AD+LR+ Sbjct: 651 YISRKHEKEEVDY-----IHPKLENILKETYGVIIYQEQVMQIAQALSSFSASKADILRK 705 Query: 711 AMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQ 770 AMGKKK EM +Q+ F +GA KNGI+ + + IF LVEKFA YGFNKSH+AAYAL+++Q Sbjct: 706 AMGKKKSVEMERQKKDFIDGAVKNGISRDQVIYIFQLVEKFAQYGFNKSHAAAYALIAFQ 765 Query: 771 TLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGE 830 T +LK HYP F A M ++ NT+K+ +E R+ + I PP+IN F + D Sbjct: 766 TAYLKTHYPIYFFCASMNTELSNTDKLNLFYEELKRLKIDIRPPNINFSYAEF-LPRDKT 824 Query: 831 IVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDR 890 I Y + A+K VG I I+ R K G F + + +R ++K LN+ LE LI SG+ D Sbjct: 825 IYYALSAVKAVGYDTISKIVYEREKNGKFNSISEFLSRVESKNLNKLQLEGLIKSGSLDI 884 Query: 891 LGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVL 950 L +R L ++ + +K + K Q +F E + Q + + W + + Sbjct: 885 LDNNRKKLFENVPEYIKQSKSSDKVNDNEQDQLFSNEMENDQTNIQEF-NILDWDKNEKI 943 Query: 951 DGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKR 1010 E E++G ++ HP+ L+ +++Y +++ K AG +++ + T + Sbjct: 944 KKEFESIGFFVGEHPLKSNLQVLKKY-NVSSHQELKNNNALKDAMIAGTLISIQEKKTAK 1002 Query: 1011 GNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREV 1070 GN I L D E+ +F++ L + + L +V + + ++ + Sbjct: 1003 GNPYAIIKLVDLGSMYELFIFSEKLVENRSDLVVGNSFLVKVKKEITKENIE-RINLENI 1061 Query: 1071 MDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARAR-LR 1129 ID+ + + ++ + + + D + +RL + G+ V++ Y+ +++ + Sbjct: 1062 FLIDDLKNQIIDKVSFEIDNIKSLDVIKSRL------NEKGSSNVNIIYKDKNSKKYSFK 1115 Query: 1130 FGATWRVSPSD-RLLN--DLRGLI 1150 + V SD L ++ + Sbjct: 1116 LDHKFNVRHSDIEFLENYQIKPIF 1139 >UniRef50_B9CKX0 DNA polymerase III subunit alpha n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CKX0_9ACTN Length = 1276 Score = 1077 bits (2785), Expect = 0.0, Method: Composition-based stats. Identities = 403/1180 (34%), Positives = 588/1180 (49%), Gaps = 89/1180 (7%) Query: 46 NLCGLVKFYGAGHGAG-IKPIVGADFNVQCDLLGDEL-----THLTVLAANNTGYQNLTL 99 N ++ A IKPI G + D + HL +LA N TGY NL Sbjct: 108 NKTHDIEAVKANKPHPLIKPIFGCEAYFITDDCIERGTKQTRYHLILLAKNETGYVNLMK 167 Query: 100 LISKAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYE 159 ++S+A + P D L +EG+I S G + RS G + Y+ Sbjct: 168 MMSEAASKEMFYFKPRTTLDMLRRYHEGIICTSACVSGIIPRSFFAGQPEEAERWALIYK 227 Query: 160 EHFPDRYFLELIRTGRPD-------EESYLHAAVELAEARGLPVVATNDVRFIDSSDFDA 212 E F D ++LE+ G D + + + L + VVATND ++ D Sbjct: 228 EIFGDDFYLEVQDHGLSDPNWNGFTDRTLSEQILNLGHKLNIKVVATNDNHYLTREDASV 287 Query: 213 HEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVR 272 +I I G D R R + Y ++EEEM E+F+ PE + NT+E+A +CN + Sbjct: 288 QDIASCIGTGSKFADANRKRMSGNEFYFKTEEEMREIFSWAPEVIDNTLEVADKCNYELD 347 Query: 273 LGEYFLPQFPT--GDMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQ 330 +LP+FP ++E+ K +EGL R + + E ER E E Sbjct: 348 WTHMYLPKFPDLAEGETSEERFRKECEEGLARRYGENWREVEISGIN---VKERFEYEYD 404 Query: 331 VINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFER 390 +I + GF YFLIV E+++W+K NG+ VGPGRGS AG++VAYA+ IT DPLE L+FER Sbjct: 405 IICKKGFADYFLIVQEYVRWAKQNGIGVGPGRGSAAGAIVAYAMDITTFDPLENGLMFER 464 Query: 391 FLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLG 450 FL+P+R MPD D+DF E+R +V+EHV +YG + VS +IT+ T+ AK I D RVL Sbjct: 465 FLSPQRSEMPDIDMDFDDERRLEVVEHVRQLYGPERVSHVITYSTIKAKQAINDACRVLD 524 Query: 451 HPYGFVDRISKLIPPDPGMTLAKAFEA---------EPQLPEIYEADEEVKALIDMARKL 501 +P R+SK+I DP L+K P E Y +E + +ID A + Sbjct: 525 YPVYQGQRLSKMISNDPKAQLSKVLHKGDGEKNDLYNPDFEEAYNTEEASREIIDAALAI 584 Query: 502 EGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRT 561 EG+ R G HA V+IAPT + D P D +G+ +TQF+ V GL+K DFLGLRT Sbjct: 585 EGLHRGEGVHACAVLIAPTPVNDHVPTKMDTKGEVEITQFEGHSVADMGLLKMDFLGLRT 644 Query: 562 LTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIK 621 LT+I+ AL+ I N + +++ IP +D + + +++ T+ VFQ+ES GM IK Sbjct: 645 LTVISRALKNIKA----NFDVDINVDEIPFEDPEIYRLMREGRTSGVFQIESAGMTATIK 700 Query: 622 RLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTY 681 ++P F+ ++AL+AL+RPGPL +GMV ++IDR +GREE D L +L TY Sbjct: 701 GMRPTEFKHIVALIALYRPGPLGAGMVSSYIDRMNGREEPVDYD-----PRLHDILAETY 755 Query: 682 GIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAK------------QRSVFAE 729 G ++YQEQVMQI+ +SG+T G +D +R+A+ KKK + M + + E Sbjct: 756 GTMVYQEQVMQISMKMSGFTAGESDKVRKAVAKKKIKLMQEVIQHWDDGADETMEQHWKE 815 Query: 730 GAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTA 789 GA +NG E A I++ V KFA Y FNKSHSA YA++ QT WLKAHYP E+MAAV+T+ Sbjct: 816 GAVRNGFKRETAEIIWEDVLKFASYAFNKSHSAGYAILVMQTAWLKAHYPHEYMAAVLTS 875 Query: 790 DMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAI 849 M T+K+V V C + G+K+ PDIN F +G I +G I+GVG G EAI Sbjct: 876 FMGKTDKIVHYVSACRQEGIKVSQPDINESGRDFTATKEG-IRFGFAGIRGVGAGVAEAI 934 Query: 850 IEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM-----NSLGD 904 + R KGG F L D R D + R V+E LI +GAFD G R LM N+ + Sbjct: 935 MAERQKGGPFSNLRDFIDRMDASQAKRNVVEALIKAGAFDSTGYTRMQLMKLIDKNNPEN 994 Query: 905 ALKAADQHAKAEAIGQADMFGVLAE---EPEQIEQSYASCQPWPEQVVLDGERETLGLYL 961 L +A + + +A GQ MF + +E + W + L E + LG+Y+ Sbjct: 995 LLDSAAKRQRDKASGQISMFDLFSEVEGSGFTEDFPDPDGVEWERRFKLSQEYDVLGIYV 1054 Query: 962 TGHPINQYLKEI---------------ERYVGGVRLKDMHPTERGKVITAAGLVVAARVM 1006 + HP+ Y + E +K+ G+ I +G+V + Sbjct: 1055 SDHPLTPYAYALSLARDYELVDIDATEEYRAPDGGIKERFKVPEGENIRLSGMVTNIQKR 1114 Query: 1007 VTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLL-----------EKDRILIVSGQVS 1055 +TK G+ + I TL+D G L ++LF A KY L + D I+ V G++ Sbjct: 1115 ITKNGDPMAIVTLEDMEGELSLVLFPKAYKKYASTLAGSVDPETGETQGDVIVGVFGKLE 1174 Query: 1056 FDDFSGGLKMTAREVMDID-EAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIP 1114 D G + V I+ K R L I + + L Q +R Sbjct: 1175 RSDR--GTQFICSGVTPIELNEANKRPRVLEIQIPVSKFSRANYEMLSQIFNKYRGNDC- 1231 Query: 1115 VHLYYQRADARARLRFGATWRVSP-SDRLLNDLRGLIGSE 1153 V L + + RV + ++ +L ++G + Sbjct: 1232 VELRIESTQGDV-MHMEIATRVDARNMAMITELSYVLGEK 1270 Score = 86.9 bits (214), Expect = 4e-15, Method: Composition-based stats. Identities = 24/56 (42%), Positives = 32/56 (57%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61 FVHL HSD+S++D + +VK+A L MPALA+TD L G+ F A Sbjct: 3 FVHLHNHSDFSILDAATRVNDMVKRAVDLKMPALALTDHGYLFGIPDFDLACRKYN 58 >UniRef50_B9L5T8 DNA polymerase III alpha subunit n=1 Tax=Nautilia profundicola AmH RepID=B9L5T8_NAUPA Length = 1132 Score = 1076 bits (2782), Expect = 0.0, Method: Composition-based stats. Identities = 431/1139 (37%), Positives = 664/1139 (58%), Gaps = 55/1139 (4%) Query: 7 VHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIV 66 +HSDYS++ + L KKA G ALAIT+ N+ ++FY + IKPI+ Sbjct: 2 TPFHIHSDYSLLHSTIRIKDLTKKAKEYGFNALAITELDNMFSAIEFYESCRANEIKPII 61 Query: 67 GADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNE 126 G+D +V + + L ++A N TGY NL L S +Y P + + +++ E Sbjct: 62 GSDVSV---IRDGNIHRLILIAKNKTGYDNLMYLSSISYLYNMRGDKPYLPFEEIVKNKE 118 Query: 127 GLILLSGGRMGDVGRSL--------LRG--NSALVDECVAFYEEHFPDRYFLELIRTGRP 176 GL + + G L L+G E + Y ++ + +LE+ R + Sbjct: 119 GLCFILPILESETGFHLNIFNENNILKGAAGYEKAKEILEIYRQNLNE-VYLEITRDSK- 176 Query: 177 DEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSP 236 +E ++L+ G P++A++++ F++ D+ + I + DD R R Sbjct: 177 EERLIEDDLIKLSNETGTPLLASSNIFFLNKLDYIYKDALECIENNKQFDDLHR-RPKVK 235 Query: 237 QQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFP-TGDMSTED----- 290 + Y RS+EE E+F D+PEA+ NT ++A+ N+ + LG P F T D + E+ Sbjct: 236 ENYFRSKEEFEEIFKDLPEAVENTDKLAESINLEIPLGNPTPPTFKFTKDYAAEEGLDID 295 Query: 291 ----YLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVME 346 Y + KEGLEERL + + E EY +RL+ E+ +I +M FPGY LIV + Sbjct: 296 NDVEYFEYKCKEGLEERLKHIPENLHE------EYRKRLDYEIDIIKRMKFPGYMLIVWD 349 Query: 347 FIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 406 F++ +K +PVGPGRGS AG+LVAY+L+IT++DPL + LLFERFLNPERVSMPD D+DF Sbjct: 350 FVREAKKRKIPVGPGRGSAAGALVAYSLQITNIDPLRYGLLFERFLNPERVSMPDIDMDF 409 Query: 407 CMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPD 466 C E+R ++IE+V + YG+ V+Q+ITFG++ AK V+RDV R+ G Y DR KLIP Sbjct: 410 CQERRGEIIEYVREKYGKVNVAQVITFGSLLAKGVLRDVARIFGIDYSEADRFVKLIPDQ 469 Query: 467 PGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 G+TL KA E EP++ EI E D L LEG+ RN G HA GVVI+ ++ + Sbjct: 470 LGITLEKAKELEPKIVEITEEDPLYNRLYSFGEHLEGLKRNTGMHAAGVVISDEELWKKS 529 Query: 527 PLYC-DEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLD 585 PLY DE VTQ+ + +E L+KFDFLGL+TLT+I+ A++ + N ++ Sbjct: 530 PLYRQDEHDDTIVTQYSLNYLEPVDLIKFDFLGLKTLTVIDRAVKNVK----FNKNEDIN 585 Query: 586 IAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQS 645 I + LDD K F+++Q T +FQ+ES GM+DL KRL+P FED+IA++AL+RPGP+ S Sbjct: 586 IDLLTLDDPKVFELIQSGHTLGLFQIESDGMQDLAKRLKPTNFEDIIAMLALYRPGPMDS 645 Query: 646 GMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGA 705 GM+D++IDRKHGR+ +SY E LKP+LEPTYG+I+YQEQVMQI Q + G++LG + Sbjct: 646 GMLDDYIDRKHGRKPVSYF-FDEFEEVLKPILEPTYGVIVYQEQVMQIVQAIGGFSLGES 704 Query: 706 DMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYA 765 D++RRAMGKKK + M K FA+ A++ G + + A +F+L+EKFAGYGFNKSHSAAYA Sbjct: 705 DIIRRAMGKKKFDLMKKYAEEFAQRAQQRGFSYDNAKSLFELIEKFAGYGFNKSHSAAYA 764 Query: 766 LVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHV 825 +++YQT +LK +YP EF++A++T + +NT+K+ ++E +G+++LPP++N F Sbjct: 765 MITYQTAYLKTYYPTEFLSALLTYEAENTDKIAKYIEEAKVLGIEVLPPNVNKSNAEFTP 824 Query: 826 NDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMS 885 +D +I++G+ AIKGVG IE+I+ R + L D + DT K+N++VLE+LI + Sbjct: 825 IED-KILFGLSAIKGVGSKAIESIVANR----PYESLEDFILKVDTSKVNKKVLEQLIKA 879 Query: 886 GAFDRLGPHRAALMNSLGDALKAADQ--HAKAEAIGQADMFGVLAEEPEQIE-QSYASCQ 942 GA D G R A+++ + + L+ + K + +F + E E E + Sbjct: 880 GAMDDFGLSRKAMLSRVEEILEFKKRVEEKKNAINHEHSLFADMEENEEIDEHLDIPNTV 939 Query: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVA 1002 + + +L+ E +TLG Y++ HP++ Y ++ L + G + A Sbjct: 940 EFDIKTLLEYEYQTLGFYVSAHPLDPYKDRMKGI--NYNLSSEVEEIISQEALFVGKIDA 997 Query: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGG 1062 +V ++K+GN+ I TL D G+++VM+F L+K + D + + QV D Sbjct: 998 MKVRISKKGNKFAIATLMDFHGKIDVMIFERDLEKLNE-FNLDEPIAIKAQV--DKVGEF 1054 Query: 1063 LKMTAREVMDIDEAR-EKYARGLAISLTDRQID---DQLLNRLRQSLEPHRSGTIPVHL 1117 L++T R++M ++EA+ EK A I++ RQI ++ L ++ L + V L Sbjct: 1055 LRVTCRKLMTLEEAKEEKGAVKDEITVIQRQIGENYEEDLLKIHSELTKNPGNKRAVLL 1113 >UniRef50_Q4FM70 DNA polymerase III alpha subunit n=8 Tax=Candidatus Pelagibacter RepID=Q4FM70_PELUB Length = 1138 Score = 1071 bits (2771), Expect = 0.0, Method: Composition-based stats. Identities = 425/1146 (37%), Positives = 650/1146 (56%), Gaps = 37/1146 (3%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 ++ F HL++H+ YS+ +G K L +P L I+D +NLCG ++F Sbjct: 4 LNNQNFNHLKIHTQYSICEGAIKIDNLKDFCKEKKIPCLGISDTSNLCGALEFAENISKV 63 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 G +PI+G + D L ++A N GY+ + L S++Y + P +D Sbjct: 64 GTQPIIGTQIYFK---FEDTTGLLPLIALNENGYKRIIELSSRSYLENDALSDPHLDVKE 120 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 180 L+ EG+ LLSG G G+ +G + + F D ++LE+ R G +E + Sbjct: 121 LLIDTEGVSLLSGTIQGLFGKLFEKGRLDEISKLYRSLSSKFNDNFYLEIQRHGDQNEIA 180 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 + +E + +P++ATN+V ++ +AH+ I +++ R + YS Q Y Sbjct: 181 FEKFNLEQSLKIQIPIIATNEVYYLTPDMHEAHDALTCIGSKTYVNEKNRIK-YSNQHYF 239 Query: 241 RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTG-DMSTEDYLVKRAKEG 299 +S EEM +LF+D+PEAL N + +CN + + LP + S ++ L K + +G Sbjct: 240 KSNEEMSKLFSDLPEALENNFNLPFKCNFRPQFSKPVLPNISSEKGGSADEILKKDSLDG 299 Query: 300 LEERLAFLFPDEEERLKRRPE---YDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGV 356 L+E+ +F EE LK + Y +RL+ EL++I +M +P YFLIV ++I+W+K+N + Sbjct: 300 LKEKFQKVFKIEENNLKTDDKFLKYKDRLDHELKIIIEMKYPSYFLIVSDYIKWAKNNDI 359 Query: 357 PVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIE 416 PVGPGRGSGAGSLVA+ L ITD+DP++F+L+FERFLNP+RVSMPDFD+DFC EKRD V + Sbjct: 360 PVGPGRGSGAGSLVAWCLSITDVDPIKFNLIFERFLNPDRVSMPDFDIDFCEEKRDLVFK 419 Query: 417 HVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGM--TLAKA 474 ++ Y +D+V+ IITFG + A+ VIRDVGRVLG PYGFVD ISK+IP DP +L + Sbjct: 420 YLTTKY-KDSVAHIITFGKLKARMVIRDVGRVLGLPYGFVDSISKMIPFDPSRPQSLTEC 478 Query: 475 FEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEG 534 +EP+L ++ D VK L D++ KLEG+ RN HA GVVIA K+T+ PLY D Sbjct: 479 INSEPRLQKLVNEDPRVKKLTDLSLKLEGLNRNVATHAAGVVIADRKLTEVVPLYKDAAA 538 Query: 535 KH--PVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLD 592 P TQFD E AGL+KFDFLGL+TLT+IN ++INK+ I I D Sbjct: 539 DLLLPSTQFDMYSAENAGLIKFDFLGLKTLTVINRTQKLINKK-----VKDFKIEDIDFD 593 Query: 593 DKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFI 652 D+K F++L T +FQ+ES GM++ + +++P+ ED+IALVAL+RPGP+ + + Sbjct: 594 DQKVFELLSSGNTVGLFQVESAGMREALLQMKPNHIEDIIALVALYRPGPM--SNIPIYN 651 Query: 653 DRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAM 712 D KHGR+ Y H L+ +L+PTYG+I+YQEQVMQIAQ LSG+T G AD+LRRAM Sbjct: 652 DCKHGRQTPDY-----LHPLLEDILKPTYGVIIYQEQVMQIAQKLSGFTAGEADILRRAM 706 Query: 713 GKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTL 772 GKKK E+ KQ+ F GA KNGI+ E+A IF +E FA YGFNKSH+AAYA++SYQT Sbjct: 707 GKKKRAELEKQKQGFIAGALKNGISKEVAASIFLKIEPFAEYGFNKSHAAAYAIISYQTA 766 Query: 773 WLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIV 832 +LK +YP EF AA MT D+ N K+ +E R+ +K++ PDIN F DD Sbjct: 767 FLKTYYPKEFFAASMTMDISNQNKLGEFHEELKRINIKVIRPDINKCFADFQ-FDDNNFY 825 Query: 833 YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892 Y +G IK VG I +++ RN+ G F+ + D R + K +N+ LE L+ +GAFD + Sbjct: 826 YALGGIKSVGYEAISNVVKERNENGDFKSINDFLNRVNPKDINKLQLEGLVKAGAFDNID 885 Query: 893 PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952 +R AL NS+ + + + +A Q D+FG E+ +I + + W + L Sbjct: 886 NNRQALFNSIPNFILKTKNIYENKAANQIDLFGSDDEQDNEI---VLNIEDWKFEDRLSR 942 Query: 953 ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012 E E +G +++ HP+NQ+ KEI V + + K A ++ T +GN Sbjct: 943 EFEAIGFFISDHPLNQF-KEIFDDYKIVDYAQFNLNDTIKEANIAATLLKITERKTAKGN 1001 Query: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVS-GQVSFDDFSGGLKMTAREVM 1071 G+ D + E+ +F+D L+ ++ L + LI++ + +D + ++ +++ Sbjct: 1002 SYGVIKFTDLTSVFELFIFSDILELNREALVEGSSLIITLIKTISNDENRFKRINVQKIA 1061 Query: 1072 DIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG 1131 + + + ++ + ++++ + + GT V + + + Sbjct: 1062 SLKDLFNMPVNEIVFNIKSIKD----IDKISDLV--NEEGTTEVKINITDKNNEISFKLK 1115 Query: 1132 ATWRVS 1137 + Sbjct: 1116 NKRLID 1121 >UniRef50_C3CTJ5 Putative uncharacterized protein n=1 Tax=Bacillus thuringiensis Bt407 RepID=C3CTJ5_BACTU Length = 1237 Score = 1069 bits (2766), Expect = 0.0, Method: Composition-based stats. Identities = 402/1198 (33%), Positives = 644/1198 (53%), Gaps = 76/1198 (6%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 R+V L H+ YS++DG K +V K A AITD + G + FY A KP Sbjct: 73 RYVSLHGHTGYSLLDGATKIHEMVAKTE----WASAITDHGVMYGTLDFYKKMKKANKKP 128 Query: 65 IVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL 124 I+G + ++ E H +LA N TGY+NL L S ++ P + +WL + Sbjct: 129 ILGFEAYIETLDGKKEGKHQLLLAINATGYRNLVKLTSMGFEN--KYYKPHVKLEWLEKY 186 Query: 125 NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRTGRPDEESYLH 183 +EG++ S G V +++++G+ L + V + F + Y++E+ R G +EE Sbjct: 187 SEGVVSTSSCLGGLVPQAIIKGDMDLARKTVQKMIDIFGKENYYIEIQRHGCEEEEVVNP 246 Query: 184 AAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSE 243 A ++LAE GL +AT+D + + D HEI + I T+DDP R ++ + Sbjct: 247 ALLQLAEEFGLKAIATSDSHYTEIEDASVHEILLCIGTKTTMDDPNRMVFPGSGYHIHTS 306 Query: 244 EEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM--STEDYLVKRAKEGLE 301 EEM +LF D+PE L NT+++A+R N+ ++LGE +LP+FP + S DY A EG Sbjct: 307 EEMEDLFWDMPELLDNTLDLAERINIDIQLGEIYLPEFPLPEGFESQADYFEHLAWEGFA 366 Query: 302 ERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPG 361 +R ++ + EY ERL E++ I MGFPGYF+IV +FI+++K+ G+ VGPG Sbjct: 367 KRFKG------QKEFKSKEYRERLTFEIETIKTMGFPGYFVIVWDFIRFAKERGILVGPG 420 Query: 362 RGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADM 421 RGS GSLVAYAL ITD+DP+ + L+FERFLNP+R+SMPD D+DF +R++VI++V ++ Sbjct: 421 RGSACGSLVAYALDITDIDPIPYGLIFERFLNPDRISMPDIDIDFEDTRREEVIDYVKEL 480 Query: 422 YGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQL 481 YG +AVS+IITFGT+AAK +RDV RVL P G + I+ IP PGMTL KA P+ Sbjct: 481 YGEEAVSRIITFGTLAAKVSVRDVARVLDKPLG--NMIANAIPEKPGMTLNKALNESPEF 538 Query: 482 PEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAP---LYCDEEGKH-P 537 +Y +D EVK ++D+A ++EG+ RN +HA GV+IAP+ +TD P L + G + Sbjct: 539 YNMYHSDAEVKEIVDIALRIEGLPRNVSQHACGVIIAPSAVTDHIPQVLLENTDTGAYEH 598 Query: 538 VTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSF 597 TQ++K + E GL+K DFLGLRT+ ++ A INK+R + G P+ + +IPLDD + + Sbjct: 599 TTQYNKDECEEMGLLKMDFLGLRTMGVMGRAFIDINKKRKELGLEPITLESIPLDDIRVY 658 Query: 598 DMLQRSETTAVFQLESRGMKDLIKRLQPDC-----------FEDMIALVALFRPGPLQSG 646 + + + T VFQLES GM + + L D FE +IA ++L+RPGPL Sbjct: 659 EYIAKGNTAGVFQLESAGMTNFMMELFQDAHTLDAEMGKQLFERLIAGISLYRPGPLDE- 717 Query: 647 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 + N+I E I Y L+P+LE TY II+YQEQ M I + L+ +T G +D Sbjct: 718 -IPNYIKNMLKPEGIEYDV-----PQLQPILETTYNIIVYQEQCMFIVRELANFTRGQSD 771 Query: 707 MLRRAMGKKKPEEMAKQRSVFAE--------GAEKNGINAELAMKIFDLVEKFAGYGFNK 758 +R+ M KK + + F G NGI+ +A+ +++ ++KF Y FNK Sbjct: 772 TIRKGMAKKVEALLNEYGEYFVHGSEEKGITGCVANGIDEHIAIALWERMKKFGRYAFNK 831 Query: 759 SHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINS 818 SH+ YA ++ +T +L +YP E+M A + + + ++K+ + R + +LPPD+N Sbjct: 832 SHATGYANIAIKTGFLAYYYPTEYMCATLNSFITMSDKIKAYMAVSKRQKIDVLPPDVNK 891 Query: 819 GLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCART-DTKKLNRR 877 F V + I +G+ I+ +G+ I +IE R+ G FR D R +K++RR Sbjct: 892 SREVFTVEGN-SIRFGLQGIRNMGKISI-RLIEERDTRGDFRNFQDCAVRMAKYQKVDRR 949 Query: 878 VLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQS 937 VLE LI SGA D R + + L L A Q K GQ +F + ++I + Sbjct: 950 VLEALIFSGAVDSFEGTRNSKLMMLDALLLVASQERKDYQSGQLSIFDIPLLSQDKIREV 1009 Query: 938 Y-ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEI--ERYVGGVRLKDMHPTER---- 990 + + L+ E+E G Y++ HP++ Y + E + L+D + Sbjct: 1010 LTPTLTEFNIDFKLEKEKEFAGFYISAHPLDSYETLLAEEEFCEIGFLQDTDEKDEADRV 1069 Query: 991 ---GKVITAAGLVVAARVMVTKR-GNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDR 1046 K I AG++ TK+ + + L+D +G ++ + F++ L++ LL + Sbjct: 1070 RSYKKSIRVAGIITEIETYYTKKDNKPLNVFKLEDTTGEIKCVAFSNVLEQSAGLLHEGS 1129 Query: 1047 ILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDD--QLLNRLRQS 1104 I+ V G+ DD G ++ + V+DI + + L R +++ + ++R Sbjct: 1130 IIAVEGKFEEDDR--GTQIMVKRVIDIHDVGNDGNPKEIVLLGSRNVNNARKQFVKVRDY 1187 Query: 1105 LEPHRSGTIPVHLYYQRADARARLRFGATWRVS---PSDRLLNDLRGLIGSEQVELEF 1159 L+ + S V +Y+ G T++V+ + ++ ++ ++G + + + Sbjct: 1188 LKEYESEDSTVPVYFIFG--------GNTYKVNFTHFNLTMITQMQEIVGKQNCRVNY 1237 >UniRef50_C7NEL3 DNA polymerase III, alpha subunit n=3 Tax=Leptotrichia RepID=C7NEL3_LEPBD Length = 1185 Score = 1068 bits (2763), Expect = 0.0, Method: Composition-based stats. Identities = 413/1209 (34%), Positives = 665/1209 (55%), Gaps = 78/1209 (6%) Query: 3 EPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGI 62 E +FVHL++H++YS+++G+ K V+KA G+ ALAITD T++ G ++F+ AGI Sbjct: 2 ENKFVHLKLHTEYSLLEGVGKIDEYVEKAKKTGVKALAITD-TSMFGAIEFFKKCKNAGI 60 Query: 63 KPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLI 122 KPI+G + + E + LT+LA N GY+NL+ L S +Y R + I D L Sbjct: 61 KPIIGLEVFLDGLEKVGEFS-LTLLAKNQNGYKNLSKLSSISYSR-FTRNRNKIKYDELK 118 Query: 123 ELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYL 182 + ++ L +LSGG +V + +L + V V + F D +F+E+ R ++ + Sbjct: 119 KYSDDLYILSGGINSEVVKGILDLENTQVRRVVEKLGKDFGDNFFIEVPAVERLEKARKM 178 Query: 183 HAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNY--SPQQYM 240 + V TNDV + + D +I +I +G +D K + Y+ Sbjct: 179 LFDIVRKNKFD-NFVITNDVYYPNRKDAVLQKIVESIKEGSKIDTEKSENSEILYDDLYL 237 Query: 241 RSEEEMCELFA------DIPEALANTVEIAKRCNVTVRLGEYFLPQFPTG-DMSTEDYLV 293 +SE E+ + F + N +I + CNV + P++ ++S +++L Sbjct: 238 KSENEIEKSFENKEYSEFYETGINNVEKIMENCNVDFEFHHFKFPKYSLPQNISEKEFLR 297 Query: 294 KRAKEGLEERLAFLFPDEEERLK----------------------------------RRP 319 EGL + + E+L+ Sbjct: 298 NLVFEGLFHKYLKKSVSDSEKLQLDKNFEIIQKEIAKDEIAGQKLKEVKIREELLKNNLE 357 Query: 320 EYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDL 379 ER E EL++I++MG+ GYF+IV +FI++S++NGV VGPGRGS AGS+V+YAL IT++ Sbjct: 358 NVLERAEYELEIIDKMGYNGYFIIVWDFIKFSRENGVYVGPGRGSAAGSIVSYALNITEI 417 Query: 380 DPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAK 439 DPLE++L+FERFLNPER+SMPD D+DF E+R+ VI +V + YG + V+ IITFGT+ A+ Sbjct: 418 DPLEYNLIFERFLNPERISMPDIDIDFDQEQREIVINYVVNKYGAEYVAHIITFGTLKAR 477 Query: 440 AVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMAR 499 IRDVGRVL VD+I+K+IP L A P+ ++Y D E+K +ID + Sbjct: 478 LAIRDVGRVLNVSLVKVDKIAKMIPF--NTELKDALNNIPEFRKMYGTDREIKKVIDYSL 535 Query: 500 KLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGL 559 KLEG R+A HA GVVI+ ++D P Y D + K TQ+ ++E G++K DFLGL Sbjct: 536 KLEGKVRHASVHAAGVVISKDVLSDEIPTYSDGKTKIVSTQYQMKELEELGILKMDFLGL 595 Query: 560 RTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDL 619 + LTI+ +E I KRR + + IPL+D+K++++L +++T VFQ ES G++ L Sbjct: 596 KNLTILRKTVENIEKRRK----TKIVLNDIPLNDEKTYELLTKADTMGVFQCESAGIRSL 651 Query: 620 IKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEP 679 +K+++ + FED+IAL+AL+RPGPL+SGMVD+FI+ K+ R EI Y D +SLK +LE Sbjct: 652 MKKMKIEKFEDIIALLALYRPGPLRSGMVDDFINVKNNRTEIKYID-----DSLKYILEE 706 Query: 680 TYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAE 739 TYGIILYQEQVM+I ++ Y+LG AD LRRA+GKK PE M K R F AEKNG+ ++ Sbjct: 707 TYGIILYQEQVMKIVSEMANYSLGEADELRRAIGKKNPELMKKNREKFVTNAEKNGVFSK 766 Query: 740 LAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVG 799 A +I+DLVEKF GYGFNKSHSAAYAL+ Y T + KA+YP EF AA++T ++ N ++ V Sbjct: 767 KANEIYDLVEKFGGYGFNKSHSAAYALIVYWTAYFKANYPLEFFAAIITTEVHNLDRFVV 826 Query: 800 LVDECWRMGLKILPPDINSGLYHFHVNDDGE---------IVYGIGAIKGVGEGPIEAII 850 V+E G+ I PD+N Y F + + E I +G+ A+KG+G I I Sbjct: 827 FVNEAKEKGINIFLPDVNLSDYDFEIEESFENNNEIKKMGIRFGLFAVKGIGAALINEIK 886 Query: 851 EARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAAD 910 + R + G F D R + ++ LE I+SGA D+L +R S+ L+ + Sbjct: 887 KER-ENGDFSSYEDFVYRMKQNGITKKQLESFILSGALDKLNGNRFEKYKSIDKILEYSQ 945 Query: 911 QHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYL 970 + ++E Q +F E+ + + +P++V+L+ E+E LG+Y++ HP+N+ Sbjct: 946 KKYESEEDLQMILFS--GEKKFKGKFEMEKADEFPQKVLLENEKEYLGIYVSSHPLNE-K 1002 Query: 971 KEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRG-NRIGICTLDDRSGRLEVM 1029 K + + ++ ++ E K + G+V + T+ G + ++D +EV+ Sbjct: 1003 KRLINIISHNKISEISQKEL-KKVRIIGIVKNVKKFATRAGKEPMVKFEMEDFQKNIEVV 1061 Query: 1030 LFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLT 1089 F + + + +I+++ G V+ + + + +I+ E L I + Sbjct: 1062 CFPREYVTFGYKITEGQIMVLEGIVNSEQNKNT--VILNNICNIENLEENKNLKLYILID 1119 Query: 1090 DRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGL 1149 + + +L++ + ++ G V L ++ + + ++ + V+ S + + + L Sbjct: 1120 EEV--KEKNQKLKEIILKNK-GDNQVFLAFKTNEKKEVVKLSKKYNVNLSLKFIRKVAKL 1176 Query: 1150 IGSEQVELE 1158 G E+++L Sbjct: 1177 FGIERIKLR 1185 >UniRef50_Q8CXA8 DNA polymerase III (Alpha subunit) n=1 Tax=Oceanobacillus iheyensis RepID=Q8CXA8_OCEIH Length = 1106 Score = 1068 bits (2761), Expect = 0.0, Method: Composition-based stats. Identities = 395/1158 (34%), Positives = 622/1158 (53%), Gaps = 59/1158 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F HL + S YS+++ L+ KA ALA+TD L G + FY A GIKPI Sbjct: 3 FTHLYIKSGYSLMESTITIPKLIDKAKQERQEALALTDIGVLYGAISFYKACIDNGIKPI 62 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 +G V+ + L +E +LA NN GYQNL L + G +++ L Sbjct: 63 IGLTVMVKDEQL-NETVPCVLLAKNNNGYQNLISLSTNININGNEE----VEKSLLDNYT 117 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRTGRPDEESYLHA 184 + ++ + G + + + + + + F D +++ + R Sbjct: 118 DDIVGILPVTTG-----MEKVFTEELGTYFSSWSNLFSDDDFYIGVDRHSLE-------- 164 Query: 185 AVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEE 244 ++ ++ +P+ + +VR++ +D A++ AI G D + + + Q + +E+ Sbjct: 165 VIQSLQSLSIPLTSIQEVRYLHENDHIAYDCLQAIRYGEKWDGTE-INSKNKQLHFTTEK 223 Query: 245 EMCELFADI-PEALANTVEIAKRCNVTVRLGEYFLPQFPTGD-MSTEDYLVKRAKEGLEE 302 EM +LF I PEALANT I +CN+ + + E ++P FP + ++ + YL + +EE Sbjct: 224 EMEDLFQYIAPEALANTERIKDKCNLEINMNERYIPSFPVPNSLTADSYLQQLCISKIEE 283 Query: 303 RLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGR 362 R R + RL EL+VI M + YFLIV +FIQ++KDN + VGPGR Sbjct: 284 RYKE----------RNDQIMNRLNYELEVIQSMNYSDYFLIVADFIQYAKDNQIAVGPGR 333 Query: 363 GSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMY 422 GS AGS+VAY L IT++DPLE++LLFERFLNPER+SMPD DVDF +RD+VI++V + Y Sbjct: 334 GSSAGSIVAYLLGITEVDPLEYNLLFERFLNPERLSMPDIDVDFSDVRRDEVIDYVREKY 393 Query: 423 GRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLP 482 G+D V+QIITFGT AA++V+R++ + L ++ + K IP +L + + +L Sbjct: 394 GQDHVAQIITFGTFAARSVLRELMKTLDVHEMDMNYVMKEIPTQSNRSLTDILKEKEELK 453 Query: 483 EIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFD 542 + +K L +A KLEG+ RN HA GVVI+ K+T+ PL + +TQ+ Sbjct: 454 AYVKQSSRLKLLFSIAVKLEGIPRNVSTHAAGVVISEKKLTNHVPLTIGTN-QTYLTQYA 512 Query: 543 KSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQR 602 ++E GL+K DFLGLR L++I I R ++ L +A IP D+ +F +L++ Sbjct: 513 MGELETIGLLKMDFLGLRNLSLIEKVNTAITNSRHRS----LQLAEIPEQDEATFQLLRK 568 Query: 603 SETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEIS 662 T VFQLES GMK +++ L P FED++A+ AL+RPGP+ + +I RK E +S Sbjct: 569 GHTNGVFQLESDGMKKVLQELMPSTFEDIVAVNALYRPGPMD--FIPTYIRRKKNVEPVS 626 Query: 663 YPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAK 722 YP H LKP+L TYG+++YQEQ+MQIA V++G+TLG AD+LRRA+ KKK +M K Sbjct: 627 YP-----HPDLKPILSKTYGVLIYQEQIMQIANVIAGFTLGEADILRRAVSKKKESDMYK 681 Query: 723 QRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEF 782 Q+ F +G G E+A +IF + +FA YGF +SH+ AY+ +SYQ ++KAHYP F Sbjct: 682 QKQAFIDGCINRGYKKEVADEIFSWIVRFANYGFPRSHAVAYSKISYQLAYMKAHYPNAF 741 Query: 783 MAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVG 842 A +++ + EK+ + E ++ ILPPDIN + V +I G+ AIKG+G Sbjct: 742 YAELISGVRNQQEKINTYIQEFKKLNGNILPPDINKSYGKYAVERK-DIRMGLSAIKGIG 800 Query: 843 EGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSL 902 PI+ I++AR K G F+ FD C R + K ++R ++E L++ G FD + +RA+L+ S+ Sbjct: 801 IQPIQEILQAR-KDGTFKNFFDFCMRVNLKIVSRTIIENLVLVGVFDSIYRNRASLLASI 859 Query: 903 GDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLT 962 A++ + E + Q +F E E SY + + + L E+E LG Y++ Sbjct: 860 DQAIEQKELFK--EFLDQPSLFQDQIEMVE----SYTEIEDFTKIKKLSDEKELLGFYVS 913 Query: 963 GHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDR 1022 HP+ +Y K++ KVI A +V A +V+ TKRG+R+ T+ D Sbjct: 914 SHPLKEYRKKLRSAGNITLSHAKKLVNTRKVIHAVVIVDAMKVIRTKRGDRMAFLTISDE 973 Query: 1023 SGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKY-- 1080 ++ +LF D + +E+ +L +SG V D L++ + E+ + Sbjct: 974 ELEIDAVLFPDLFRQISNKVEEGMLLQISGVVE--DRKQRLQIVIQSGHPFQESELERHE 1031 Query: 1081 ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSD 1140 G T Q++ +LRQ L G IP+ +Y + D + R + + Sbjct: 1032 PSGEVFIRTHSSKRTQVIEKLRQ-LAELEPGEIPIIVYDR--DLKQSYRLSEHYSLRVDR 1088 Query: 1141 RLLNDLRGLIGSEQVELE 1158 ++ L G G E V ++ Sbjct: 1089 KVQKQLEGFFGKENVAVK 1106 >UniRef50_B3WE63 DNA-directed DNA polymerase III, alpha subunit n=8 Tax=Lactobacillus RepID=B3WE63_LACCB Length = 1098 Score = 1066 bits (2758), Expect = 0.0, Method: Composition-based stats. Identities = 367/1157 (31%), Positives = 592/1157 (51%), Gaps = 70/1157 (6%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F L+VHS+Y+++ + L+ A + G A+A+TD + GLV+FY AG+KP+ Sbjct: 3 FTQLQVHSNYTLLHSPLALSDLISAAKSRGYSAIALTDTNVVYGLVEFYRQAKAAGLKPL 62 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 +G + L V+A NN GY L + ++ A P+ D L Sbjct: 63 LGMQIAIDDA-------KLLVIAKNNQGYHQLLKISTQIML----ATSPVAFADLLPLT- 110 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 185 GL+ ++ +++ + + + P+ ++ L DE Sbjct: 111 -GLVAITLP-DSPFSAAVVANDHNRAVAFLQELDNKQPEAVYVGL------DEAHLDTPL 162 Query: 186 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 245 A ++ L ++A +V + D +D ++ AI DG L+ + +++ + Sbjct: 163 PTFATSQQLHLMALGNVLYRDPTDAFTQKVMAAIGDGSQLNFRDPVLTDAGPWWLKPPAD 222 Query: 246 MCELF--ADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKRAKEGLEE 302 F A + A+ N +IA + +VT+ + LP + T D +++DYL K A+EGL Sbjct: 223 ASAPFVAAGLQAAVDNAAQIADQTDVTITFKQPQLPHYQTPDQLASKDYLTKLAQEGLAN 282 Query: 303 RLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGR 362 R Y +RL+ EL VI +MGF YFL+V + + ++ + G GR Sbjct: 283 RF--------HDQPIPTTYQQRLQYELDVIIKMGFADYFLVVWDVMNYAHKVNIMTGAGR 334 Query: 363 GSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMY 422 GS AGSLV+YAL IT++DP+ +DLLFERFLNP R MPD D+D +R ++I++V D Y Sbjct: 335 GSAAGSLVSYALAITEVDPIAYDLLFERFLNPARAQMPDIDLDIPDNRRGELIQYVHDKY 394 Query: 423 GRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLP 482 GR+ ++QIITFGT AK IRDV RV G + S+ IP M L A++ L Sbjct: 395 GRNHMAQIITFGTFGAKQAIRDVARVFGMSQFESNTWSRAIPNLLHMDLKTAYDQSQPLK 454 Query: 483 EIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFD 542 + + + L A LEG+ R+ HA G+V++ +TD L +G TQ Sbjct: 455 NLVADSPKNRMLFQTALALEGLPRHYSTHAAGIVLSEEPLTDTVALQPSGDGLEQ-TQVP 513 Query: 543 KSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQR 602 K DVE GL+K DFLGL+ L I+ A + + + D IPL+D+ + + R Sbjct: 514 KDDVEALGLLKMDFLGLKNLNILAAASHFVTRDTGRT----FDPKQIPLNDQPTLALFAR 569 Query: 603 SETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEIS 662 +T VFQ ES G+K+++++L+P FED++A+ AL+RPGP+++ +D FI RK+G+E I+ Sbjct: 570 GDTNGVFQFESAGIKNVLRKLRPTDFEDVVAVNALYRPGPMEN--IDTFIARKNGQEPIA 627 Query: 663 YPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAK 722 YPD +L+ +L+PTYG+++YQEQVMQ+A V+ G++LG AD+LRRAM KKK +A Sbjct: 628 YPD-----PALEKILKPTYGVLVYQEQVMQVASVMGGFSLGEADLLRRAMSKKKSSVLAA 682 Query: 723 QRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEF 782 ++ F EGA K G A ++ +++FA YGFN+SH+ AY++V++ +LK H PA F Sbjct: 683 EQDKFIEGAVKQGFPEATAKTVYAYIDRFANYGFNRSHAVAYSMVAFWLAYLKVHDPAAF 742 Query: 783 MAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVG 842 AA+M A M+N K+ V E + +L PDIN+ F ++ DG+I +G+ ++KG+ Sbjct: 743 FAALMNASMNNLPKLRTYVQEAKARQVALLGPDINTSNGGFKLS-DGKIRFGLLSVKGMR 801 Query: 843 EGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSL 902 EAI AR K G F++ DL R + K L + LI++GAFD +RA + +L Sbjct: 802 RDFSEAIFTAR-KNGPFKDFRDLLQRLEPKWLKADNFKPLILAGAFDSFDDNRAQTIANL 860 Query: 903 GDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLT 962 + + + A +F VLA +P + P L+ E LG+YL+ Sbjct: 861 DELINSVKL-----AGNDVGLFSVLAPKPIVV-------PEMPAGERLEEEANVLGVYLS 908 Query: 963 GHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDR 1022 GHP+++Y +Y L ++ G+ + LV + + TK G + D Sbjct: 909 GHPVDKYAPLKTQY----TLVNVVDLAEGRTVDILLLVRHIKRIRTKTGKPMAFVDGQDA 964 Query: 1023 SGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYAR 1082 +G + + +F + + +E D +++V+G+V + L++ + D E + Sbjct: 965 TGTVSLTVFPNLYPTL-EKIETDMVVLVNGRVE--KRNDDLQLIVNRIQDAAPLLEALPK 1021 Query: 1083 G-LAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDR 1141 L I L +D + + L++ H G IPV ++ + + V+ Sbjct: 1022 AQLFIRLDADNVDART-DLLKKLQTAH--GPIPVITV--DTTSKESVLLDKRYWVTADTS 1076 Query: 1142 LLNDLRGLIGSEQVELE 1158 L+ DL G+ V L Sbjct: 1077 LMADLESRFGAANVVLR 1093 >UniRef50_Q38WU5 DNA-directed DNA polymerase III, alpha subunit n=25 Tax=Lactobacillales RepID=Q38WU5_LACSS Length = 1110 Score = 1065 bits (2754), Expect = 0.0, Method: Composition-based stats. Identities = 380/1157 (32%), Positives = 622/1157 (53%), Gaps = 56/1157 (4%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FV L+V S Y++++ K LV A A G +LA+TD + GLV FY A A IKP+ Sbjct: 3 FVQLQVKSTYTLLESTTKITDLVTAAKARGYQSLALTDKNVVYGLVDFYKAAKAADIKPL 62 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 +G V + DE L +LA N TGYQN+ + +K + ++ + + L Sbjct: 63 LGITIEVGGLIQTDERFPLILLAKNLTGYQNILKISTKIMTQS-----ELVPFEAVQSLL 117 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRTGRPDEESYLHA 184 + L++++ + G++ R LL+ ++ + + D +L + + Sbjct: 118 QQLVVITPSQDGELVRLLLQNDATAAQTYIERLKAVVDADSLYLGISAKQAASRQRV--P 175 Query: 185 AVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEE 244 +L++ +P+VA DVR+++ D A ++ I G ++ + P+ ++ + Sbjct: 176 LGQLSQQTAVPLVALGDVRYLEPEDAFAVQVLQHIKAGTQVN-LQTPQAPGG-YFLEDVQ 233 Query: 245 EMCELFA--DIPEALANTVEIAKRCNVTVRLGEYFLPQFPTG-DMSTEDYLVKRAKEGLE 301 + F + EA+ANT +IA +C V + LPQF T S YL ++++ GL+ Sbjct: 234 QATAAFEALQLAEAVANTQKIAAQCQVDLSFKRAQLPQFETPAGQSAATYLKQQSQAGLQ 293 Query: 302 ERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPG 361 R E Y RL+ ELQVIN+MGF YFLIV + +Q++ + GPG Sbjct: 294 ARFKTQPIPET--------YQTRLDYELQVINEMGFADYFLIVADVMQYAHQQNIMTGPG 345 Query: 362 RGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADM 421 RGS AG+LVAYAL+ITD+DP+ + LLFERFLNP R +MPD D+D +RD+V+++V Sbjct: 346 RGSAAGALVAYALRITDVDPIRYQLLFERFLNPNRANMPDIDLDIPDNRRDEVLDYVYQK 405 Query: 422 YGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQL 481 YG++ ++QIITFGT+AAK ++DVGRV G + SK IP +TL +A++ Sbjct: 406 YGQNHMAQIITFGTLAAKMALKDVGRVFGLSQFEMSAWSKAIPNVLKITLQEAYDQSQAF 465 Query: 482 PEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQF 541 + ++ + L + A+++EG+ R+ HA G+V++ +T+ L + TQ Sbjct: 466 KNLVADSQQNRLLFETAQRIEGLPRHYSTHAAGIVLSQAPLTETVALQSGGDEIEL-TQL 524 Query: 542 DKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQ 601 +VE GL+K DFLGLR L I+ +++++++ + P + IPLDD + + Q Sbjct: 525 PMGNVEELGLLKIDFLGLRNLGILANIVKLVSQQTGQ----PFNPQNIPLDDPATLALFQ 580 Query: 602 RSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEI 661 + +T +FQ ES G+K++++RL+P FED++A AL+RPGP+++ +D FIDRK G+ + Sbjct: 581 QGDTNGIFQFESTGIKNVLRRLKPTSFEDIVATDALYRPGPMEN--IDTFIDRKSGKVPV 638 Query: 662 SYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMA 721 +YPD +SL +L+PTYGI++YQEQVMQ A + G+TLG AD+LRRAM KKK + Sbjct: 639 TYPD-----DSLAEILQPTYGILVYQEQVMQAASKMGGFTLGEADILRRAMSKKKKAVID 693 Query: 722 KQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAE 781 R+ F EGA G + A ++D +E+FA YGFN+SH+ AY+ +++ +LK H P Sbjct: 694 ASRTKFIEGALALGHTEQAATTVYDYIEQFANYGFNRSHAVAYSKIAFWLAYLKVHQPEA 753 Query: 782 FMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGV 841 F AAV+ A ++ K + E + L +LPPDIN +F V D G I++G+ +IKG+ Sbjct: 754 FFAAVLNAVLNQGTKTKTYLAEAKKRQLSVLPPDINLSQRYFKVTDAG-IIFGLYSIKGL 812 Query: 842 GEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNS 901 + AI++ GG F+ + R D K L + L LI SGAFD+ P+R AL+ + Sbjct: 813 RRDFVAAILDEHQTGGPFKSVLQFLQRLDAKYLKKEALVALIYSGAFDQFNPNRNALLMN 872 Query: 902 LGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYL 961 L D L + A +F +LA + + + LD E E LG YL Sbjct: 873 LDDLLDSVKL-----AGDNMSLFEILAPKEKTVSN-------LTLTERLDKEAEYLGAYL 920 Query: 962 TGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDD 1021 +GHP+ +Y + + RY + D+ P + +++ V +V+ TK+G ++ T D Sbjct: 921 SGHPVEKYER-VRRYYHVPEVSDLAPNQNVRLVLF---VRRIKVIRTKKGEQMAFVTGQD 976 Query: 1022 RSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYA 1081 +G + V LF + L K+++++V G+ L++ ++M ++A++ Sbjct: 977 ATGEISVTLFASVYRQVADWLTKEQVILVIGKTEQRQ---ELQLIGNQIMLAEQAQKGLP 1033 Query: 1082 RGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDR 1141 + + + ++ Q LE R G IPV LY + + + + ++ ++ Sbjct: 1034 KATLYLRLSADLTREQQQKMYQLLEKSR-GPIPVILY--NSATKKSILLNERYWIANDEK 1090 Query: 1142 LLNDLRGLIGSEQVELE 1158 L L L+G V L+ Sbjct: 1091 LTTALTTLLGPTNVILK 1107 >UniRef50_C7XU22 DNA polymerase III n=1 Tax=Lactobacillus coleohominis 101-4-CHN RepID=C7XU22_9LACO Length = 1114 Score = 1060 bits (2742), Expect = 0.0, Method: Composition-based stats. Identities = 383/1170 (32%), Positives = 623/1170 (53%), Gaps = 72/1170 (6%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M + L V S YS++ + LVK A G A+A+TD L G V FY A A Sbjct: 1 MRKMSVTPLDVTSTYSLLQSTIRPRDLVKAAREQGYSAIALTDENVLYGAVDFYNAAQQA 60 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 GI+PI+G + L + T +TV+ N GY L L + + + + +D Sbjct: 61 GIRPIIGLKLQLTFAELDERKTTVTVIEKNQQGYTELMQLST----QQMTSKAELTVQDV 116 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 180 + +++ I++ L + + ++++ P F+ + P E Sbjct: 117 VKQIDNCAIIIKPTMA-----ILTAHRDPTIQKLLSWFGN-QPGDIFMGINLVLDPTERQ 170 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 L +L+ GL ++A V +++++ + ++ AI DG ++ P + + Q Y+ Sbjct: 171 VLK---DLSLQNGLKLIADEPVEYLEANQYFPTQVLRAIGDGRQIESPLSTAHNTGQHYL 227 Query: 241 RSEEEMCELF--ADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKRAK 297 R+ + + + A + +A+ N + ++ + + + LP+F + +T YL + Sbjct: 228 RNAQNLTVAYERAGLADAVENNEVLVQKSSFKINFQKPVLPEFAVPEGVNTAQYLRQLCI 287 Query: 298 EGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVP 357 GL++R L P+ + +Y +RLE EL VI+QMGF YFLIV + + ++ + Sbjct: 288 IGLKKR--HLAPNTTIK-----QYRDRLERELTVIHQMGFDDYFLIVWDIMAFAHRKQIT 340 Query: 358 VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEH 417 GPGRGS AGSLVAYAL ITD+DPLE+ LLFERFLNPER MPD D+D +R +V+E+ Sbjct: 341 TGPGRGSAAGSLVAYALAITDVDPLEYGLLFERFLNPERAQMPDIDLDIPDNRRQEVLEY 400 Query: 418 VADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIS---KLIPPDPGMTLAKA 474 V YG + V+QIITFGT+AA+ V+RDVGRV G P V++I +++ +TLA+A Sbjct: 401 VHQRYGHERVAQIITFGTLAARQVVRDVGRVFGVPKYQVEQIIDTLRVLSRHRSVTLAEA 460 Query: 475 FEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYC-DEE 533 + L + D K +I++ARKLEG+ R+ HA GVV++ T + + PL ++E Sbjct: 461 IQQSQPLRNLMTDDPINKLVIEVARKLEGLPRHYSTHAAGVVLSATPLKEIVPLQPGNDE 520 Query: 534 GKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDD 593 +TQF K VE GL+K DFLGLR L+I++ AL +I++ P DI +PL+D Sbjct: 521 AGLLMTQFPKEIVESVGLLKMDFLGLRNLSIMDRALAIIHQTT-----PGFDITKVPLND 575 Query: 594 KKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFID 653 K+ + ++ T +FQ ES G++ +++L PD FED++A+ AL+RPGP+Q+ + +FI Sbjct: 576 HKTIQLFKQGLTDGIFQFESTGIRQTLQQLAPDNFEDIVAVNALYRPGPMQN--IPHFIA 633 Query: 654 RKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMG 713 RKHG+E I PD +SL+P+L PTYGI++YQEQVMQ+A ++G++LG AD+LRRAM Sbjct: 634 RKHGQEPIQLPD-----QSLQPILGPTYGILVYQEQVMQVASKMAGFSLGQADLLRRAMS 688 Query: 714 KKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLW 773 KKK M R F GA KNG N +A ++F+ +++FA YGFN+SH+ AY+ ++Y+ + Sbjct: 689 KKKQATMESMRQRFISGAVKNGYNQPIAEQVFNYIDQFANYGFNRSHAVAYSKMAYEMAY 748 Query: 774 LKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVY 833 LK H+ F A++ + N +KV + + R G++I+ P+IN + + +G+IV Sbjct: 749 LKCHFTTAFFTALLAIEP-NMDKVRLHLADAQRFGVRIIGPNINQSQMEYSL-QNGQIVM 806 Query: 834 GIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGP 893 G IKG+ I+AIIE R K G F+ L D R K ++E LI +GAFD+LG Sbjct: 807 GFSMIKGMRRDFIQAIIEER-KAGQFKNLPDFVQRLGEKWQKAALIEPLIYAGAFDQLGY 865 Query: 894 HRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGE 953 +RA ++ L + + + ++ Q +P L E Sbjct: 866 NRAEMIEGLSGVFAGNE----------------FSFQSADLQPIMKRRQEYPLTYRLQKE 909 Query: 954 RETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRG-N 1012 +E LG+YL+GHP+ QY + + + R+ D+ P G + L+ R + TK+ Sbjct: 910 QEYLGMYLSGHPVTQYQR-VRQQQHTQRIMDLKP---GSSVKLLVLLNQIRQINTKKTHQ 965 Query: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072 + T D +G +++ +F ++ L+ I+++ G V + L++ A +++ Sbjct: 966 PMAFATASDETGSMDITIFPRQYQRFVDALKPTTIVMIEGSVE--QRNERLQVIANQIIP 1023 Query: 1073 ----IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARL 1128 ++ R+ + I ++D D+LL ++ L G PV +Y A Sbjct: 1024 VERLLNNQRQVSHQRWVIRVSDNSSVDELLPKMLA-LTKSMHGNTPVVIYNVAAQQATT- 1081 Query: 1129 RFGATWRVSPSDRLLNDLRGLIGSEQVELE 1158 V D++ + L + GS V L+ Sbjct: 1082 -LPRQQWVGQQDKVRDALNKVFGSNNVVLQ 1110 >UniRef50_Q1RKF9 DNA polymerase III subunit alpha n=21 Tax=Rickettsia RepID=DPO3A_RICBR Length = 1172 Score = 1060 bits (2741), Expect = 0.0, Method: Composition-based stats. Identities = 423/1181 (35%), Positives = 636/1181 (53%), Gaps = 69/1181 (5%) Query: 3 EPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGI 62 + F+HLR S YS + T +V+ A++ M A+ +TD NL G ++F G+ Sbjct: 2 QTEFIHLRTQSSYSFLASALTTEKIVELASSYKMAAICLTDKENLFGSLEFALYAIKKGL 61 Query: 63 KPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLI 122 +PI G N+Q + + ++A + TGY+NL L S + I + L Sbjct: 62 QPIHGVILNIQYETGV--FAEILLIAKDETGYKNLLKLSSITFTTNDRKICNHITFEDLK 119 Query: 123 ELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYL 182 E EGLI L G +G+ LL + +E F DR++ E++R P+E+ Sbjct: 120 EHQEGLITLCCYTEGVIGKCLLANKEEQAEMFARNLQEIFGDRFYFEIMRHDLPEEQLIE 179 Query: 183 HAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRS 242 +++A +P+VATN V F S DAH++ + I G T + P R + S Y +S Sbjct: 180 DNYIKIASKLNIPLVATNKVLFSKKSMHDAHDVLLCISAGVTKEYPDR-KTVSENCYFKS 238 Query: 243 EEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKEGLEE 302 +EM ELFAD+P A+ NTV + +RC LP F T D+S D + K AK+GL Sbjct: 239 AKEMIELFADLPSAIENTVNLTQRCYFAAHTNPPMLPNFATKDISETDLIRKEAKDGLLA 298 Query: 303 RLAFLFPDE----EERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPV 358 RL F E E + + EY RL+ EL +I M F GYFLIV +FI+WSK G+ V Sbjct: 299 RLDTKFKSEHISIEHQESIKTEYFARLDYELNIICSMNFAGYFLIVSDFIKWSKKQGILV 358 Query: 359 GPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHV 418 GPGRGSGAGS+VA++L ITDLDP++F LLFERFLNP+R+SMPDFD+DFC E+R++VI +V Sbjct: 359 GPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPDRISMPDFDIDFCQERREEVINYV 418 Query: 419 ADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP--GMTLAKAFE 476 YG + V QIITFG M AKAVI+DV RVL PY F D +++L+P +TL +A Sbjct: 419 RSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVPFSAINPVTLEQAIR 478 Query: 477 AEPQLPEIYEAD---------EEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAP 527 P+L + + E +K ++D + LEG+ R++ HA G+VIA T + D P Sbjct: 479 EVPELANAAKGNGLYNLEGELELIKLVLDTSLILEGLHRHSSTHAAGIVIAGTDLVDIVP 538 Query: 528 LYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIA 587 +Y D V + E AGL+KFDFLGL+TLT+I +++ ++ +D Sbjct: 539 VYKDANSDMLVVGYSMKYCELAGLIKFDFLGLQTLTVITDCKKLLKEQ-----NIEIDFN 593 Query: 588 AIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGM 647 + DD+K++ ML + + VFQ ES GMKD ++RL+PD D+IAL AL+RPGP+++ Sbjct: 594 DMTFDDEKTYQMLCKGKGVGVFQFESVGMKDALRRLKPDSIHDLIALGALYRPGPMEN-- 651 Query: 648 VDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADM 707 + +I KH ++ Y HE LKP+LE TYG+++YQEQV +IAQVL+GYTLG AD+ Sbjct: 652 IPTYIACKHKLQQPDY-----LHELLKPILEETYGVVIYQEQVQRIAQVLAGYTLGAADL 706 Query: 708 LRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALV 767 LRRAMGKK EM +Q +F +GA N I+ A IF V KFAGYGFNK+H+AAY ++ Sbjct: 707 LRRAMGKKIKAEMEQQEEIFVKGAIANNISEAQAKSIFATVAKFAGYGFNKAHAAAYGVI 766 Query: 768 SYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVND 827 SYQT +LKA+YPAEF+ A + +++N +K+ + E +KI+ P+IN +F V Sbjct: 767 SYQTAYLKANYPAEFVVACLNLELNNHDKINLFLQEAKDNNIKIIAPNINISGGYFSVKS 826 Query: 828 -------------------------DGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFREL 862 D I++ +GAIKGV + + + RN G F+ + Sbjct: 827 VIPRLDCGIHGDQLKDTAVKPQYDIDSSIIFALGAIKGVTPNFGKLVTDERNARGAFKSI 886 Query: 863 FDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQAD 922 D R K +N ++LE LI +G FD L +R L S+ L + + + +A Q Sbjct: 887 VDFIERLPPKAINSKLLENLIKAGCFDELHDNRLQLFLSISKLLAYSVSYHEEQASNQFS 946 Query: 923 MFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRL 982 + V + E + S + + E E +GL+++ HP+ +Y KEI + + Sbjct: 947 LIKVSSLSKEIL----VSSDYADKNTLAFYEFEAMGLFISNHPLTEY-KEIFNRLNILSS 1001 Query: 983 KDMHPTERG--KVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFT-DALDKYQ 1039 D+H + AG++ ++ RG R L D E+ +F+ + L Y Sbjct: 1002 ADLHNNLPDGTNRVMIAGVIQKKDSRMSARG-RFVTLVLSDPENIFELSIFSEEVLKDYV 1060 Query: 1040 QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLN 1099 LL+ +++V+ + D+ GG+K+TA+ I+ A L + + + +Q++ Sbjct: 1061 HLLDVKSLVVVNCDIIKDE--GGIKITAKSFSSIENATGNQQFDLQLYPKNDEELEQIIT 1118 Query: 1100 RLRQSLEPHRSGTIPVHLYYQRADAR---ARLRFGATWRVS 1137 L + +Y + A++ F + + Sbjct: 1119 LLSARINNDEQSNTIATIYLSNKSVKNFVAKITFPEKFFLK 1159 >UniRef50_D0JAY7 DNA polymerase III subunit alpha n=2 Tax=Blattabacterium RepID=D0JAY7_BLASB Length = 1434 Score = 1037 bits (2683), Expect = 0.0, Method: Composition-based stats. Identities = 371/1210 (30%), Positives = 622/1210 (51%), Gaps = 98/1210 (8%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG---- 61 + H+ H+ +S++ LV +A MPA+ ITD+ NL G F A H Sbjct: 253 YSHIHNHTYFSILYSTVDIRSLVDRAIHFNMPAVGITDYGNLMGSFHFLNAIHSINKKNY 312 Query: 62 ----IKPIVGADFNVQCD--------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109 IK IVG + + + D+ L+ N GY NL L S + G+ Sbjct: 313 PKKLIKGIVGCEVFLSDNYLQKKFTKDEPDKRYQQVFLSKNKKGYHNLAKLCSLGFTEGF 372 Query: 110 GAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLE 169 A P I + + + E LI L+G ++ ++L ++ +++E F D +++E Sbjct: 373 YAGIPRIGKKLIEKYKENLIALTGDLNAEIPYTILNYGERKAEKVFLWWKELFGDDFYIE 432 Query: 170 LIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP- 228 L+R G +E ++ ++ + + N+ ++D ++ +AH+I + + +G P Sbjct: 433 LLRHGLEEENHVNDILLKFSKKYHVKYIVQNNTFYLDKNEANAHDILLCVKNGEKQSTPI 492 Query: 229 -----KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT 283 R + + Y ++ EEM ++F+D+PE+ E+ + + LP+F Sbjct: 493 GKGKGYRFGFPNHEFYFKNSEEMKKIFSDLPESFDFLEELVNKIESYHLSRKILLPKFQI 552 Query: 284 G-------------DMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQ 330 + +L + EG +ER + E ER+ EL+ Sbjct: 553 PRSFEDPMDKIDGGNRGENRFLKRITYEGAKERYKNM----------TKEIQERILFELK 602 Query: 331 VINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFER 390 I ++G+PGYFLIV FIQ ++ + +GPGRGS AGS+VAY + IT++DP+++ LLFER Sbjct: 603 TIERIGYPGYFLIVHNFIQQARKMNISIGPGRGSVAGSVVAYCIGITNIDPIKYHLLFER 662 Query: 391 FLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLG 450 FLNP R+S+PD D+DF RD++IE V YG++ V+QIIT+ TM AK+ IRD GRVL Sbjct: 663 FLNPNRISLPDIDIDFDDRGRDKIIEWVVQKYGKNQVAQIITYATMGAKSSIRDTGRVLD 722 Query: 451 HPYGFVDRISKLIPPDPGM--------TLAKAFEAE----PQLPEI-YEADEEVKALIDM 497 DR++K+IP + ++ K + + +L +I D ++ Sbjct: 723 LSLKETDRLAKMIPNMLSLKTILSENCSIEKIRKEDTNNIQKLRKIAINKDSLEGKVLQQ 782 Query: 498 ARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFL 557 A+ LEG R+ G HA G++I+P I ++ P+ +E +TQFD VE+AGL+K DFL Sbjct: 783 AKILEGTIRSTGIHACGIIISPYNIKEYIPVSVSKESDLLLTQFDNHVVEHAGLLKMDFL 842 Query: 558 GLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMK 617 GL+TLTII A+ +I K+R N E PL+D+K++ + Q+ ET AVFQ ES GM+ Sbjct: 843 GLKTLTIIKDAVNLIKKKRKNNTELSF-----PLEDEKTYCLFQKGETIAVFQYESPGMQ 897 Query: 618 DLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVL 677 +++L+PD F+D+IA+ AL+RPGPLQ + NFI RKHG+E I+Y ++ L Sbjct: 898 KYLRQLKPDKFDDLIAMTALYRPGPLQ--YIPNFISRKHGKEAITYDL-----PEMEEFL 950 Query: 678 EPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGIN 737 + TYGI +YQEQVM IAQ ++ ++ G AD+LR AMGKK+ E + R+ F + A K G + Sbjct: 951 KETYGITIYQEQVMLIAQKIADFSKGDADLLRIAMGKKQKEVLNTMRNQFIDSAMKKGYS 1010 Query: 738 AELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKV 797 + KI+ E F+ Y FNKSH+ YA +++QT +LKAH+P E+MA+V++ +M N ++ Sbjct: 1011 KNILEKIWKDWEYFSCYAFNKSHATCYAYIAFQTAYLKAHFPYEYMASVLSNNMHNIRQL 1070 Query: 798 VGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGG 857 ++EC +M + ++ PDIN F V D I +G+ IKGVGE ++ I++ R K G Sbjct: 1071 TFFIEECRKMNISVIHPDINESDSFFEVTDSNRIRFGLTGIKGVGENAVKIILQEREKNG 1130 Query: 858 YFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAAL--------MNSLGDALKAA 909 + + DL R D + +N++ LE LI+SG+ D HR +N+L ++ Sbjct: 1131 PYTSILDLVKRIDLRIVNKKTLESLILSGSLDCFHIHREQYFHIENDEKLNTLEKIIRFG 1190 Query: 910 DQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQY 969 + KA+ + E + + C W L E+E LG+Y + HP++ Y Sbjct: 1191 SKFQKAKNK---------STEMKMDQPVIMGCDLWSNVYKLSKEKEVLGVYASAHPLDDY 1241 Query: 970 LKEIERYVGG-----VRLKDMHPTERGKVITAAGLVVAARVMV-TKRGNRIGICTLDDRS 1023 E++ ++ + GK I G++ + G + G+ L+D + Sbjct: 1242 YYEMKYFMNTSLSNLSLISKKESMFVGKKIHTCGILSKIEKKTYIRSGIKYGLFLLEDYN 1301 Query: 1024 GRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSG-GLKMTAREVMDIDEAREKYAR 1082 E ++ KY+ +L + +L + +S + F K+ + ++ EK + Sbjct: 1302 SSKEFRIYGQKYLKYEPILLINNLLYLC--ISIEKFKDQEYKINILHIENLQNVLEKLVQ 1359 Query: 1083 GLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRF-GATWRVSPSDR 1141 L + + +++ +++ + ++L + G +++ + R L F + ++ + Sbjct: 1360 KLIVKININDLNNTMISNI-ETLFSQQKGNKKLNIVLYDKENRIFLNFESRKYGININSS 1418 Query: 1142 LLNDLRGLIG 1151 L L + G Sbjct: 1419 FLKKLEKING 1428 >UniRef50_D2EL28 DNA polymerase III subunit alpha n=1 Tax=Pediococcus acidilactici 7_4 RepID=D2EL28_PEDAC Length = 1112 Score = 1037 bits (2682), Expect = 0.0, Method: Composition-based stats. Identities = 354/1156 (30%), Positives = 591/1156 (51%), Gaps = 54/1156 (4%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FV L V S YS++ K A LVK A G A+A+TD + G ++FY A +KPI Sbjct: 4 FVPLHVLSSYSLLTSPTKIAELVKTAKDRGYSAMALTDNNTMYGAIEFYQACLKNDLKPI 63 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 VG + D L +LA N GY NL + S +A P + + L Sbjct: 64 VGLTIWLDSTRGIDNQFALVLLAKNINGYHNLLRISSAKMTE--ISAKPTLTFNDLRAYW 121 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEE-HFPDRYFLELIRTGRPDEESYLHA 184 + L+++ +V L RG + + Y++ FL + Sbjct: 122 KDLVVIVPPVRSEVNELLERGMANDAQALIEEYQQSIDSPDLFLGI---NGQQSHVMRQT 178 Query: 185 AVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEE 244 ++A+ G+ + V +++ D A ++ I G L P+ +++ Sbjct: 179 LTQMAQKAGIGCLPLPSVEYLNEEDHFATQVLRDIDSGKVLQHPELLAKGGGNNWLKPAT 238 Query: 245 EMCELFADIPEA--LANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTE-DYLVKRAKEGLE 301 E + + +A L + N+ + + LPQF T + YL + ++ L Sbjct: 239 EFVREYGQLGDAEMLTQLDRVVAGINLEIPIVSPRLPQFATPNQQDSFTYLTQLCQQALT 298 Query: 302 ERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPG 361 + L PD E Y RL+ EL VI +MGF YFLI+ + +Q++ + GPG Sbjct: 299 Q-LKENVPDAER-------YQARLDHELAVIKEMGFADYFLIIHDVVQFAHQKQILTGPG 350 Query: 362 RGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADM 421 RGS AGSLVAY LKIT +DPL++ LLFERFLNPER MPD D+D ++R+ V+++V D Sbjct: 351 RGSAAGSLVAYLLKITSVDPLQYGLLFERFLNPERAQMPDIDLDIPDDQREVVLQYVHDR 410 Query: 422 YGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQL 481 YG V QIITFGT+AAK IRDV RV G +++IS LIP +TL +A + +L Sbjct: 411 YGHQHVGQIITFGTLAAKQAIRDVARVFGEMPNKINQISALIPNKLNITLKQAAQTSHRL 470 Query: 482 PEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQF 541 + E+ + + + + A +LEG+ R+ HA G+V++ ++ + P+ D ++Q+ Sbjct: 471 RDFIESSPKNRFMFETACRLEGLPRHFSTHAAGIVLSQDELVESVPVQ-DGNEGMLMSQY 529 Query: 542 DKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQ 601 K+ VE GL+K DFLGLR L+++N LE++++ EP +I I L+D ++ + Q Sbjct: 530 SKNFVEQVGLLKMDFLGLRNLSLMNNILELVHRT-----EPQFEIEKIELNDPQTLQLFQ 584 Query: 602 RSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEI 661 +T+ VFQ ES G++++++++ P F ++A+ AL+RPGP+++ +D F+ RK E Sbjct: 585 WGDTSGVFQFESTGIRNVLRKVHPTNFGLVVAVNALYRPGPMEN--IDRFVKRKDHLEPY 642 Query: 662 SYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMA 721 +P ++ L+ VL TYGI++YQEQVM++A + G +LG AD+LRRAM KKK + Sbjct: 643 RFP-----NQILERVLGETYGILVYQEQVMEVASAMGGLSLGQADLLRRAMSKKKHAVIE 697 Query: 722 KQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAE 781 + R+ F +GA + G + ++A +++ +E FA YGFNKSH+ AY+ +++Q +LKAHYP + Sbjct: 698 QMRTNFIQGAVQKGYSEKIAQQVYRYIENFANYGFNKSHAVAYSKLAFQLAYLKAHYPGD 757 Query: 782 FMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGV 841 F A++ + + N K + E R+G+ L PDIN + +G+I G AIKG+ Sbjct: 758 FYTALLNSVVGNDTKTKTYIQELKRLGIPTLAPDINQSSATYT-YQNGQIRMGFTAIKGL 816 Query: 842 GEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNS 901 I+ ++ R +GG F+ + D R + ++ V++KLI +GA D G +RA L Sbjct: 817 RRDFIQHLLAERERGGQFKTVDDWLRRMGNQGIDEDVIDKLIFAGALDSFGYNRAELDEY 876 Query: 902 LGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYL 961 L + LK + D+F +++ + S P LD E E LG Y+ Sbjct: 877 LPELLKGI-----TFSGQNVDLF-------QKLMPTIKSRPDLPLDEKLDREEELLGTYV 924 Query: 962 TGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDD 1021 + HP+ ++ + I++ R + + G+ +T+ + + R + TK+G + + D Sbjct: 925 SAHPVERFAELIKQR----RFVQIQQFKAGEKVTSIVYIRSIRSIRTKKGEPMAFAKISD 980 Query: 1022 RSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYA 1081 ++ E ++F QLLE R+L ++G+V L++ ++ + Sbjct: 981 QTDECEAVIFPRVYQA-TQLLESKRVLQLTGKVE--QREDQLQLIVDQIEAPRQIAHGQT 1037 Query: 1082 RGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDR 1141 L I + R+ RL + + G +PV L Y+ + + + + + Sbjct: 1038 HWL-IKVPSRKNPADFQKRLFGMFKEYH-GKVPVTLVYRDTNQQR--ALSEKFSLQGTPE 1093 Query: 1142 LLNDLRGLIGSEQVEL 1157 + L+G++Q+ L Sbjct: 1094 VKKAFENLLGTDQISL 1109 >UniRef50_C2D6U4 Possible DNA-directed DNA polymerase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D6U4_9ACTN Length = 1302 Score = 1035 bits (2676), Expect = 0.0, Method: Composition-based stats. Identities = 380/1186 (32%), Positives = 580/1186 (48%), Gaps = 109/1186 (9%) Query: 62 IKPIVGADFNVQCD-----LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPII 116 IKPI G + N+ D + HLT+L N GY NL ++S A + P Sbjct: 125 IKPIFGCEANLIPDQCIEKGTPQKRYHLTLLVKNAVGYVNLMKMMSLAANQMM-YYKPRT 183 Query: 117 DRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRP 176 L + +EGLI LSG G + + ++ ++ F D ++LE+ G Sbjct: 184 TFAMLEKYHEGLICLSGCAHGVIAQMIVTQQYDAARAWAQKFKALFGDDFYLEIQDHGVS 243 Query: 177 -------DEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPK 229 E+ V+L + G+ VVATND + D + +I I LD+ Sbjct: 244 LDSWNGMSEQMIAQRIVQLGKEEGIAVVATNDNHYFHQDDVETRDILSCIGANTHLDENY 303 Query: 230 RPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT--GDMS 287 + + Y +SEE+M LFA +PEA+ +V IA +C+ + +LP+FP + Sbjct: 304 QSTLPGSEFYFKSEEQMRALFAWVPEAVDESVRIAAKCSFELDWTHMYLPKFPGLREGET 363 Query: 288 TEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347 +E+ ++GL + + D ER E E VI GF YFLIV E+ Sbjct: 364 SEERFRSECEQGLARKYGKQWQDVTINGVN---VKERFEYEYGVICFKGFADYFLIVQEY 420 Query: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 ++W+K++G+ VGPGRGS AG++VAYA+ IT DPLE L+FERFL+ ER MPD D+DF Sbjct: 421 VRWAKEHGIGVGPGRGSAAGAIVAYAMDITAFDPLENGLMFERFLSLERTEMPDIDMDFD 480 Query: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467 E+R +V++HV ++YG D V +IT+ T+ AK I D RVLG+P ++SK++ DP Sbjct: 481 DERRLEVVQHVRELYGSDRVCHVITYSTIKAKQAINDAARVLGYPVATAQKLSKMVSSDP 540 Query: 468 GMTLAKAFEA--------EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAP 519 L P + Y + + +ID AR +EG+ R G HA ++IAP Sbjct: 541 KTKLKFVLSKTEGKEDMYNPDFVDAYHNNGDEHRIIDAARSIEGIIRGEGVHACAILIAP 600 Query: 520 TKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKN 579 T + D P D +G +TQ++ V GL+K DFLGLRTLT+I+ AL+ I Sbjct: 601 TPVNDHVPTKLDTKGGVEITQYEGHSVADMGLLKMDFLGLRTLTVISKALDNIRASYPDL 660 Query: 580 GE------------------PPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIK 621 + +D IP D + F ++ T VFQ+ES GM IK Sbjct: 661 SKLDSLGDGVKACLKPGATCIDIDPQKIPFTDPRIFQLVGSGRTAGVFQIESEGMTATIK 720 Query: 622 RLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTY 681 ++P F ++AL+AL+RPGPL +GMV ++I+R +GRE + + D + L +L+ TY Sbjct: 721 NMKPKEFRQIVALIALYRPGPLGAGMVTSYINRMNGREPVVFYD-----DRLSDILDETY 775 Query: 682 GIILYQEQVMQIAQVLSGYTLGGAD-MLRRAMGKKKPEEM------------AKQRSVFA 728 G I+YQEQVMQI+ +SG++ G +D +R+ + KKK + + Sbjct: 776 GTIVYQEQVMQISVKMSGFSKGESDSKIRKPVAKKKIALLTSTIFHWENGRDETTYDHWM 835 Query: 729 EGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMT 788 GA NG E+A +I+D V +FA Y FNKSHSA YA++ QT WLKA++P E+MA+V+T Sbjct: 836 NGASANGYKKEVAQRIWDDVLEFASYAFNKSHSAGYAILVMQTAWLKAYFPREYMASVLT 895 Query: 789 ADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEA 848 + M T K+V + C G+KILPPDIN F G I +G I+GVGE A Sbjct: 896 SYMGKTNKIVHYISACNHEGIKILPPDINESGRDFTATPQG-IRFGFAGIRGVGENVGIA 954 Query: 849 IIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLG----- 903 I++ R K G F L D R ++ + NRRV+E LI +GAFD G R LM + Sbjct: 955 IMQERKKNGPFANLHDFVKRVNSAQANRRVVEALIKAGAFDSCGYPRKQLMGFIDKNNPK 1014 Query: 904 DALKAADQHAKAEAIGQADMFGVLAE-EPEQIEQSYASCQP---WPEQVVLDGERETLGL 959 + + A +H K ++GQ +F E E+ P W + +L ERE LG+ Sbjct: 1015 NIIDEAARHEKDRSMGQLSLFDYFGTVEGSGFEEKIPPADPHDRWEDGFMLSQEREVLGI 1074 Query: 960 YLTGHPINQYLKEIERYVGGVRLKDMHPT-----------------ERGKVITAAGLVVA 1002 Y+T HP+ Y + R L ++ + GK I AG+ Sbjct: 1075 YVTDHPLRPYQVALRR-SRDFTLSELEESKEVIDEQSGATHLEYKVPEGKTIHLAGMTAT 1133 Query: 1003 --ARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLE-----------KDRILI 1049 + +TK G ++ I TL+D G++ +++F + LL+ ++ + Sbjct: 1134 GLIQRRLTKTGKQMAIVTLEDMEGQIPLVVFPKVFEASSALLKGEVLESLDSSGENIFIK 1193 Query: 1050 VSGQVSFDDFSGGLKMTAREVMDIDEARE-KYARGLAISLTDRQIDDQLLNRLRQSLEPH 1108 V+G++ + ++ + + + + I L+ ++ LR L + Sbjct: 1194 VTGKLERGERGN--QVIVETLAPLQLSGAINSIHVIEIGLSTSKLSTPYFEMLRSVLVRY 1251 Query: 1109 RSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLN-DLRGLIGSE 1153 G V L Y+ + A + V D LL ++ + GS+ Sbjct: 1252 -PGLDRVELLYESS-AHDIMHMELPLTVDACDPLLKAEIEDMFGSD 1295 Score = 74.2 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 27/56 (48%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61 FVHL HS +S++D +V A A M ALA+TD + G+ F A Sbjct: 3 FVHLHNHSFFSVLDASTSIQNMVDAAVAQHMHALALTDHAYMFGIPDFDLACRKYN 58 >UniRef50_C4YXX0 DNA polymerase III, alpha subunit family n=1 Tax=Rickettsia endosymbiont of Ixodes scapularis RepID=C4YXX0_9RICK Length = 1245 Score = 1029 bits (2662), Expect = 0.0, Method: Composition-based stats. Identities = 426/1251 (34%), Positives = 640/1251 (51%), Gaps = 141/1251 (11%) Query: 3 EPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGI 62 P F+HLR S YS ++ +V+ A++ M A+ + D NL G ++F G+ Sbjct: 2 RPEFIHLRTQSSYSFLESALTIEKVVELASSNKMSAICLADKGNLFGSLEFALYAVKKGL 61 Query: 63 KPIVGADFNVQCDL----------------------------------------LGDELT 82 +PI G N++ ++ GD Sbjct: 62 QPIHGVILNIKYNIQHHSASFRQDEFKSKPAERTKVREQRLDSKNSLVSSLLNDAGDIFA 121 Query: 83 HLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRS 142 + ++A + TGY+NL L S + + ID + LIE EGLI L G VG+ Sbjct: 122 QILLIAKDETGYKNLLKLSSLTFTKNDRKICDHIDFEDLIEYQEGLIALCCYTDGIVGKC 181 Query: 143 LLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDV 202 LL N +E DR++ E++R P+E+ + + +A +P+VATN V Sbjct: 182 LLARNEEQAMLFARKLQEILGDRFYFEIMRHDLPEEQFIEDSYIRIAAELAIPLVATNKV 241 Query: 203 RFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVE 262 F + S DAH++ + I G T + P R + S Y RS EM ELF+D+P A+ NTV Sbjct: 242 LFSEKSMHDAHDVLLCISAGVTKEYPDR-KTVSENCYFRSPHEMIELFSDLPSAIQNTVN 300 Query: 263 IAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKEGLEERLAFLFPDE----EERLKRR 318 + +RC LP F T D+S D + K AKEGL RLA F E E + + + Sbjct: 301 LRERCYFAAHANPPMLPNFATKDISETDLIRKDAKEGLLARLATKFKSENISLENQEELK 360 Query: 319 PEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITD 378 EY RL EL +I M F GYFLIV +FI+WSK G+ VGPGRGSGAGS+VA++L ITD Sbjct: 361 TEYFARLNYELDIICNMNFAGYFLIVSDFIKWSKKEGILVGPGRGSGAGSVVAWSLLITD 420 Query: 379 LDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAA 438 LDP++F LLFERFLNPER+SMPDFD+DFC E+R++VI +V YG + V QIITFG M A Sbjct: 421 LDPIKFGLLFERFLNPERISMPDFDIDFCQERREEVINYVRSKYGDNRVGQIITFGKMQA 480 Query: 439 KAVIRDVGRVLGHPYGFVDRISKLIPPDP--GMTLAKAFEAEPQLPEIYEAD-------- 488 KAVI+DV RVL PY F D +++L+P ++L +A P+L + + Sbjct: 481 KAVIKDVARVLSLPYKFADYLTELVPFSAVNPVSLEQAIREVPELANAAKGNGLYNLEGE 540 Query: 489 -EEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVE 547 E +K ++D + LEG+ R++ HA G+VIA T + D P+Y D V + E Sbjct: 541 AELIKLVLDTSLILEGLHRHSSTHAAGIVIAGTDLVDIVPVYKDANSDMLVVGYSMKYSE 600 Query: 548 YAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTA 607 AGL+KFDFLGL+TLT+I +++ ++ +D + DD K++ ML + + Sbjct: 601 IAGLIKFDFLGLQTLTVITDCKKLLKEQG-----IEVDFNNMTFDDNKTYQMLCKGKGVG 655 Query: 608 VFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQ 667 VFQ ES GMKD ++RL+PD D+IAL AL+RPGP+++ + +I KH ++ Y Sbjct: 656 VFQFESIGMKDALRRLKPDSIHDLIALGALYRPGPMEN--IPTYIACKHKLQQPDY---- 709 Query: 668 WQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVF 727 HE LKP+LE TYG+++YQEQV +IAQVL+GYTLG AD+LRRAMGKK +EM +Q +F Sbjct: 710 -LHELLKPILEETYGVVIYQEQVQRIAQVLAGYTLGAADLLRRAMGKKIKKEMEEQEEIF 768 Query: 728 AEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVM 787 +GA N I+ A IF V KFAGYGFNK+H+AAY ++SYQT +LKA+YPAEF+ A + Sbjct: 769 VKGAIANNISESQAKSIFATVAKFAGYGFNKAHAAAYGVISYQTAYLKANYPAEFLVACL 828 Query: 788 TADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEI---------------- 831 +++N +K+ + E G+KI+ P+IN +F V + Sbjct: 829 NLELNNHDKINLFLQEAKDNGIKIIAPNINISEGYFSVKSSDTVIPRAATCHPQGSLCHP 888 Query: 832 ----------------------VYGIGAIKGVGEGPIE-AII------------------ 850 + I+G+G E AII Sbjct: 889 RESGDPEKLETALNHKSMKMDSRFRGNDIEGIGYDKEENAIIFALGAIKGVTPNFGKLVT 948 Query: 851 EARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAAD 910 + R G F+ + D R K +N ++LE LI SG FD L +R L +S+ L + Sbjct: 949 DERKARGMFKSITDFIERLPPKSINSKLLENLIKSGCFDELHDNRLQLFSSISKLLSYST 1008 Query: 911 QHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLD-GERETLGLYLTGHPINQY 969 + + + Q + + + + + ++ L E E +GL+++ HP+ QY Sbjct: 1009 SYHEEQGSNQFSLI-----KVSTLSPTILVSSDYADKNTLAFYEFEAMGLFISNHPLMQY 1063 Query: 970 LKEIERYVGGVRLKDMHPT--ERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLE 1027 +EI + + D+ E + AG++ ++ RG R L D E Sbjct: 1064 -QEIFSRLNILNTADLQNNLPEGTNRVNLAGVIQKKDSRMSARG-RFVTLVLSDPENIFE 1121 Query: 1028 VMLFT-DALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAI 1086 + +F+ + L Y LL+ +++V+ + D+ GG+K+TA+ + I++A L + Sbjct: 1122 LSIFSEEVLKDYVHLLDVKSLVVVNCDIIKDE--GGIKLTAKSFLSIEDAINNKQFELQL 1179 Query: 1087 SLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADAR---ARLRFGATW 1134 + + Q++ L + +Y Q D + A++ + Sbjct: 1180 YPQNHEELLQIVTLLATRINNRDQSNAKATIYLQSEDVKNFVAKITLPEKF 1230 >UniRef50_Q2GEN2 DNA polymerase III, alpha subunit n=2 Tax=Neorickettsia RepID=Q2GEN2_NEOSM Length = 1077 Score = 1021 bits (2640), Expect = 0.0, Method: Composition-based stats. Identities = 427/1154 (37%), Positives = 632/1154 (54%), Gaps = 93/1154 (8%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M FVHLRV SDYS++ + K +V A A GMPA+A+TD + G ++F + Sbjct: 1 MRRQTFVHLRVRSDYSLLRAVTKPRRIVDLARAAGMPAVALTDIDTMAGALEFAEYAKAS 60 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 GI+PI+G D ++ + + + + ++A N GY N+ L R + + Sbjct: 61 GIQPIIGIDLSISHNRVD---SRVLLIAKNEEGYHNMIKLSGIVSLR-------RVALNE 110 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 180 + ++GLILL +G+ + S + V+ ++ F F+E+ R G +S Sbjct: 111 VFTHSKGLILL----LGEFFIDAINSYSIDAETLVSDLKQVFGKDLFVEIQRLGN---QS 163 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 ++L +P VATNDV F D+ +AH++ I ++D R +YSP+ Y Sbjct: 164 AEEKLIQLGYEHNIPFVATNDVLFPDTDFREAHDVLTCIGSLTYVNDINRV-HYSPESYF 222 Query: 241 RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKEGL 300 +S EEM LFAD+ EAL NTV IA+RC+ + LP+F +M D L + + GL Sbjct: 223 KSAEEMIALFADLKEALHNTVLIARRCSFMPEVRSPILPKF-ECEMDESDELRRLSYIGL 281 Query: 301 EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360 R+ P Y +RLE EL +I M + GYFLIV +FI+WSK NG+ VGP Sbjct: 282 HRRMGADVPQN---------YLDRLEYELGIIIDMNYAGYFLIVADFIRWSKANGIVVGP 332 Query: 361 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420 GRGSG GS+VA+ L IT LDPL+F L FERFLNP RVSMPDFDVDFC EKR VIE+V Sbjct: 333 GRGSGVGSIVAWCLGITGLDPLKFALFFERFLNPVRVSMPDFDVDFCQEKRHLVIEYVRK 392 Query: 421 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478 YG V+QI+TFGT+ +A +RDVGRVL PYG VDRI K+IP +P ++L +A + Sbjct: 393 KYG--HVAQIMTFGTLQPRAALRDVGRVLQLPYGRVDRICKMIPNNPANPISLQEAINLD 450 Query: 479 PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538 L E DE + L+D+A KLEG R+ HA G+VI+ T I D+ P+Y D+E PV Sbjct: 451 KDLQRESEDDESIAKLLDLALKLEGTLRHTSTHAAGIVISDTPIEDYLPVYHDKESDIPV 510 Query: 539 TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598 TQ+ VE AGL+KFDFLGL+TLT+IN A ++ + P DI +IPLDDK+++D Sbjct: 511 TQYSMKYVEKAGLIKFDFLGLKTLTVINQACLLVRLK-----NPNFDIDSIPLDDKRTYD 565 Query: 599 MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658 +L VFQL++ M + +KRL PDCFED+IAL++L RPGP+ + + +I RKHG+ Sbjct: 566 LLSAGNAIGVFQLDNAYMCETLKRLHPDCFEDIIALISLNRPGPMAN--IPTYIARKHGK 623 Query: 659 EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718 E + YP H L+ L+ T+G+++YQEQVM++ ++L+GYTL AD+LRR MGKK Sbjct: 624 EAVKYP-----HPLLESSLKETFGVVIYQEQVMEMVRLLAGYTLAEADILRRVMGKKIRA 678 Query: 719 EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778 EM++Q F EGA++NGI E A +IF+++EKFAGYGFNKSH+AAYAL+SYQT +LKA++ Sbjct: 679 EMSEQAEKFVEGAKRNGIETERAQEIFEMIEKFAGYGFNKSHAAAYALISYQTAFLKANF 738 Query: 779 PAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAI 838 P EF A + ++ +T+K+ L+ + G+ ILPPDIN F + D+ I Y + A+ Sbjct: 739 PIEFTTAALNLELHHTDKLAILIQDAKNYGITILPPDINKSKILFSIEDN-AIRYSLAAL 797 Query: 839 KGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAAL 898 K VGE AI + F + +L D K ++R+ +E LI SGA D L P R+ L Sbjct: 798 KNVGEAAASAI----QRRSPFATIPELQRCLDGKIVHRKAVESLIKSGATDVLSPDRSGL 853 Query: 899 MNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLG 958 + L + + K + Q +F + +PE+ + +PW E + G Sbjct: 854 YSCLKELV------GKEDDGAQMTLFDISVNKPEK------TVKPWNFFERTQCEFDAFG 901 Query: 959 LYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICT 1018 +L HP+ Y K ++ AG++ R + ++ + + Sbjct: 902 FFLFDHPLFPYRKFLKLSPN----------------QIAGVITELR-IRSRGDRKFAVMH 944 Query: 1019 LDDRSGRLEVMLF-TDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDE-A 1076 + + VM + +D +D ++L ++ V ++ G + ++ E Sbjct: 945 VSTVNDIYTVMFYESDVIDSRRELF----VVGVKVVLTLLKSDNGY--VCTNLAELHEFI 998 Query: 1077 REKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRV 1136 Y AI + + + L+ L R G V L + R+ G + + Sbjct: 999 FSNYNGRFAILVN----RKEQVTALKDVLR--RGGKYEVTLVVRNDSQYTRIVLGHDFDL 1052 Query: 1137 SPSD-RLLNDLRGL 1149 + L+ + L Sbjct: 1053 AVDKLALIEGVEIL 1066 >UniRef50_A8RC96 Putative uncharacterized protein n=2 Tax=Erysipelotrichaceae RepID=A8RC96_9FIRM Length = 1027 Score = 1021 bits (2639), Expect = 0.0, Method: Composition-based stats. Identities = 344/1064 (32%), Positives = 582/1064 (54%), Gaps = 44/1064 (4%) Query: 7 VHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIV 66 VHL V S Y+++ ++ G ++A+TD + G + FY A IKPI Sbjct: 3 VHLHVRSAYTLLQSTLTIPKIIACTKQHGYQSVALTDKNVMHGAMAFYHACIKENIKPIF 62 Query: 67 GADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNE 126 G + ++ +LA N+ GY +L L + G + + L + Sbjct: 63 GMEV---EAAYDNDSLGFILLAKNDQGYVDLMKLSTLLNT---GEHAKQVSFEELCLYTK 116 Query: 127 GLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAV 186 ++L+ G + L++ L+ + + + F D +++ + R +S Sbjct: 117 DCVVLTNGDQNIMETYLVKEEIGLLSKLLQLCTQSFTD-FYVSIARNDSGLLKSKNPRLK 175 Query: 187 ELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEM 246 L + + VA + + F D ++ ++++ AIH ++DD R N+SP++Y RS+ EM Sbjct: 176 SLCKEMKIRTVALSRIYFQDEAEEESYKTLCAIHQQVSVDD--RMLNFSPKRYYRSQAEM 233 Query: 247 CELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKRAKEGLEERLA 305 +L+ + E L + EIA +CNV ++ + LP+F S+E++L +GL +R+ Sbjct: 234 AQLYDE--EDLLASEEIAAKCNVKMQFPQAILPKFKNKYGVSSEEFLRNLCHKGLAKRM- 290 Query: 306 FLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSG 365 Y +RLE EL VI M + YFLIV +FI+++K + +GPGRGS Sbjct: 291 -------HFQAIPKVYQQRLEYELDVIINMHYADYFLIVWDFIRFAKSQNIYIGPGRGSA 343 Query: 366 AGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRD 425 AGSLV+Y L IT +DPL+++LLFERFLNPERVSMPD D DF +RD+VIE+V +YG Sbjct: 344 AGSLVSYCLGITHVDPLQYNLLFERFLNPERVSMPDIDTDFPDNRRDEVIEYVKGLYGSH 403 Query: 426 AVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIY 485 S IITF T+AAK V+RDVGR + +D + K++P P +TL +E + + Sbjct: 404 RASHIITFNTLAAKQVLRDVGRAMNISLREIDSLCKMVPSMPKVTLDYTYENSARFKQKI 463 Query: 486 EADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSD 545 + + + L ++++LEG+ R+A HA G+V++ I+ PL D + TQF Sbjct: 464 NSSQLYRKLFAISKQLEGLPRHASLHAAGIVLSNDAISSVCPL-IDVDAGISATQFTMDY 522 Query: 546 VEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSET 605 +E GL+K DFLGLR LTII+ + +IN ++ E LDI IPL+DKK+F ++Q +T Sbjct: 523 MEELGLIKMDFLGLRNLTIIDEVVNLIN----RDHENKLDIMHIPLNDKKTFALIQAVDT 578 Query: 606 TAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPD 665 VFQLES GMK+L+++++P CFED++A VALFRPGP+++ + +++R+ +++ Y Sbjct: 579 VGVFQLESEGMKNLLRKMKPTCFEDIVATVALFRPGPMEN--IPEYLERRANPQKVDY-- 634 Query: 666 VQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRS 725 H LKP+LE TYGI++YQEQ+MQ+AQV++G++LG AD LR+A+ KKK EE+A+ ++ Sbjct: 635 ---IHPLLKPILENTYGIMIYQEQIMQVAQVMAGFSLGKADNLRKAISKKKGEELARLKN 691 Query: 726 VFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAA 785 F +GA++ G +LA+ +++L+ KFA YGFN+SHS AY +++YQ +LKA+ P F + Sbjct: 692 DFIQGAKQKGFEEQLAIHVYELIMKFANYGFNRSHSVAYGMIAYQMAYLKANAPLYFFVS 751 Query: 786 VMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGP 845 ++ + + + K + E + G+ IL P +N + + + + + IKG+G Sbjct: 752 LLNSMIGSESKTSEYIFEAKKRGISILLPSVNFSGNGYRIEKR-SLRFPLNGIKGIGNAV 810 Query: 846 IEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDA 905 I++ RN G FR+ FD AR + ++ +E LI +GA D +R++++ +L DA Sbjct: 811 CSQILKERNSHGKFRDYFDFVARMSAIHIGKKTMEILIYAGALDEFNINRSSMIATLEDA 870 Query: 906 LKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHP 965 L+ + +A F ++++ + + S +++ E+E LG YL+ HP Sbjct: 871 LRYGELVKIEDADQILFAFELVSKPAIISVKEHRSM-------LVEKEKECLGFYLSSHP 923 Query: 966 INQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGR 1025 I K + + + + + + ++ + TK G + D + + Sbjct: 924 IELLRKRMNAQLAPL----IALKAQRGYVRFLCMIERVKQHRTKNGALMAFAVSADETSK 979 Query: 1026 LEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTARE 1069 ++++ + + Y + L + + + G + ++ KMT E Sbjct: 980 IDLVCMPNIYEIYHEKLVRGKYFYIEGVIDKENSCLVKKMTPIE 1023 >UniRef50_C9B7L3 DNA polymerase III alpha subunit n=18 Tax=Enterococcus RepID=C9B7L3_ENTFC Length = 1104 Score = 1017 bits (2630), Expect = 0.0, Method: Composition-based stats. Identities = 359/1159 (30%), Positives = 594/1159 (51%), Gaps = 63/1159 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F L + YS++ + V++A G +LAITD L G +FY G++PI Sbjct: 3 FPQLYTITSYSLLQSTIRIREYVQEAKKQGYTSLAITDKDVLYGAPEFYRICVEEGVQPI 62 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 +G + + ++ L A + GYQ L L S+ + + + D L Sbjct: 63 IGLHLSYTYE---EKNYGLLAYAKDEIGYQQLMKLSSRKMIQEKLDLAEMTETDHLA--- 116 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 185 ++ + + + E F +++ L PD+ L Sbjct: 117 --FVVPANHSVSEAF----NKEDNFFGHWQFLLENVFTRNFYIGLTEN-TPDQ---LPEW 166 Query: 186 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGF--TLDDPKRPRNYSPQQYMRSE 243 + + A + + + + A E+ I DG L++ + Y+ SE Sbjct: 167 YQYVIKENYSLCALHPIASLQQEELFALEVMKHIKDGSQIPLENLSASLPLTANGYLLSE 226 Query: 244 EEMCELF--ADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMS-TEDYLVKRAKEGL 300 +EM + F A + +A+ +A+ + + + LP +P + +YL + + Sbjct: 227 QEMIKRFEKAGLSQAVIGAQRLAESISFEFQFHQKLLPHYPVPNGKQAGEYLRELCYSQV 286 Query: 301 EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360 E R+ EY ERL+ EL VI+QMGF YFLIV + + ++ N + G Sbjct: 287 ERRI----------TDYTKEYQERLDYELSVIHQMGFDDYFLIVWDVMAFAHRNKIVTGA 336 Query: 361 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420 GRGS AGSLVAY L+ITD+DPLE+DLLFERFLNPER +MPD D+D +R++V+ +V + Sbjct: 337 GRGSAAGSLVAYVLEITDVDPLEYDLLFERFLNPERFTMPDIDLDIPDNRREEVLNYVRE 396 Query: 421 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQ 480 YG+ ++QI TFGTMAAK V+RD RV G +R SK IP +TL +A++ Q Sbjct: 397 KYGQYHMAQIATFGTMAAKMVLRDAARVFGLSQSEANRWSKAIPNQLKITLTQAYKTSHQ 456 Query: 481 LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQ 540 L E+ +A E+ + L A LEG+ R+ HA GVVI+ + + PL + TQ Sbjct: 457 LVELVQASEKNQLLFKTAVILEGLPRHVSTHAAGVVISDKNLLELVPLQRGSDEAFL-TQ 515 Query: 541 FDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDML 600 + ++VE GL+K DFLGLR L+II++ L+ + + + + +PL+D K+ + Sbjct: 516 YTMNEVEAIGLLKMDFLGLRNLSIIDFTLKAVKRVEGYE----IRLKEMPLNDAKTLLLF 571 Query: 601 QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE 660 QR ET+ VFQ ES G++++++RL P+ ED+ A+ AL+RPGP+Q+ +D FI RK G+E Sbjct: 572 QRGETSGVFQFESAGIRNVLRRLGPENIEDIAAVNALYRPGPMQN--IDTFIARKKGKEA 629 Query: 661 ISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM 720 I YPD +SL P+L+ TYG+I+YQEQ+MQIA ++G+TLG +D+LRRA+ KKK + + Sbjct: 630 IRYPD-----DSLIPILKNTYGVIVYQEQIMQIASTMAGFTLGQSDILRRAVSKKKKDVL 684 Query: 721 AKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA 780 +++S F GA + G + + A +++ +EKFA YGFN+SH+ AY+ V +Q +LKAH+P Sbjct: 685 DEEKSHFVSGALQQGYSEKTAATVYEYIEKFANYGFNRSHAFAYSFVGFQMAYLKAHHPG 744 Query: 781 EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG 840 F ++M + NT K+ + E + LK+ P IN F + + EI +G+ AIKG Sbjct: 745 AFFTSLMNSVRHNTSKLKEYIAEARKNKLKLSSPSINQSNSSFELVNKEEIRFGLTAIKG 804 Query: 841 VGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMN 900 + +E I+ R + G F+ + R D + L +L+ L G FD L P+R LM Sbjct: 805 IRRDFVEDILNERKQNGPFQSVDQFLIRIDKRWLKLELLQSLTAVGVFDELSPNRKQLML 864 Query: 901 SLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLY 960 L ++ + G D+ G++A + E++ + + L E E LG+Y Sbjct: 865 DLEGKIQNI-----VYSGGSLDLLGIMALKEEEVA-------DYTLEERLKLEEEYLGIY 912 Query: 961 LTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLD 1020 L+GHP + +R +++ + + + ++ R + TK+G + Sbjct: 913 LSGHPAEGF----DRLRLAKQVQLITDIVPNQPVNLLVMIKEVREIRTKKGELMAFVEGT 968 Query: 1021 DRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKY 1080 D SG + V +F KY+ L DR++ V G+ ++ L++ D ++ +Y Sbjct: 969 DSSGEISVTVFPTLYRKYRNLFAVDRVIFVQGRSEISKYNQELQLIGESFADPNQLEAQY 1028 Query: 1081 A-RGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPS 1139 + + +T+ + D +++ +L+ + H G IPV +Y+++ + + V S Sbjct: 1029 PSQTCYLRITEEREDPEIMKQLQVIFQKH-PGYIPVVMYHEKTQRKVV--LSDAYWVDDS 1085 Query: 1140 DRLLNDLRGLIGSEQVELE 1158 + L L+G + V + Sbjct: 1086 KSIKGQLIYLLGEDNVVFK 1104 >UniRef50_Q1WTT4 DNA polymerase III alpha subunit n=2 Tax=Lactobacillus salivarius RepID=Q1WTT4_LACS1 Length = 1097 Score = 1011 bits (2614), Expect = 0.0, Method: Composition-based stats. Identities = 368/1155 (31%), Positives = 606/1155 (52%), Gaps = 61/1155 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 + L+V S YS++ + + VK LG AL +TD ++ G++ FY AGIKPI Sbjct: 2 YAPLQVLSSYSLLQSPLRISEYVKLGKELGYSALVLTDINSMYGVLDFYHECVKAGIKPI 61 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 +G GD+ +A N+ GYQNL + SK I + E Sbjct: 62 IGITLQ-----SGDDEY--IFIAKNSNGYQNLMNISSKRLTAVDENYKNIFKLTDITEYL 114 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 185 + +I++ V ++ + V+ E + + P++ ++ Sbjct: 115 QDVIVILNPSYLTVND-IISDQVTELQTLVSAAETI-----YYGV----NPNDRDAINND 164 Query: 186 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 245 + AE L + V+++ D+ + ++ AI G ++ + Y+ + EE Sbjct: 165 LMAAEKLQLETILLTPVKYLKERDYFSTKVLQAIGTGENVN--PNWNFKNDGNYLHTPEE 222 Query: 246 MCELFAD-IPEALANTVEIAKRCNVTVRLGEYFLPQFP-TGDMSTEDYLVKRAKEGLEER 303 L D + A N + + +CN+T+ + LP F T +S+E +L K +EGL +R Sbjct: 223 YGRLGTDYLSNAYQNAINVIAQCNLTLNFPKTQLPHFKETNGLSSEAFLRKLCQEGLAKR 282 Query: 304 LAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRG 363 +A EE +K + EY RL+ EL VI++MGF YFLIV + ++ +N + GPGRG Sbjct: 283 IA------EENIKNQEEYQNRLDYELSVIHRMGFDDYFLIVWDVTNFAHENNILTGPGRG 336 Query: 364 SGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYG 423 S AGSLV+Y L ITD+DP+++DL+FERFLN ER MPD D+D KRD +IE++ YG Sbjct: 337 SAAGSLVSYTLYITDIDPIKYDLIFERFLNEERAQMPDIDLDIPDIKRDTIIEYLHQKYG 396 Query: 424 RDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPE 483 + ++QIITFGT+ K V+RDV RV D SK IP + G+TL +A+ + L Sbjct: 397 QQHMAQIITFGTLKTKQVLRDVARVFDLKTYEADAWSKAIPKEYGITLKEAYASSQSLKN 456 Query: 484 IYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDK 543 + + + + L + A LEG+ R+ HA G++++ + D P+ +G ++QF K Sbjct: 457 LVADNSKNRLLFETAIALEGLPRHYSTHAAGIILSDDDLVDHVPVQIGGDG-ILMSQFAK 515 Query: 544 SDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRS 603 + VE GL+K DFLGLR L+I+ + +I K + DI I LDD ++ + Q + Sbjct: 516 NQVEEVGLLKMDFLGLRNLSILENTITLIKKGYHID----FDIRKINLDDPETLKIYQNA 571 Query: 604 ETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISY 663 ET+ +FQ ES G++ ++ +L+P FED+ A+ AL+RPGP+Q+ +D FI RKHG I+Y Sbjct: 572 ETSGIFQFESAGIRGVLTKLKPTSFEDVAAVNALYRPGPIQN--IDEFIARKHGERPITY 629 Query: 664 PDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQ 723 P + L+ +L+ TYGI++YQEQVMQ+A + G+TLG AD LRRAM KKK + +++ Sbjct: 630 PS-----KELEGILKQTYGIMVYQEQVMQVASTMGGFTLGQADSLRRAMSKKKHDIISRM 684 Query: 724 RSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFM 783 +F GA K G E+A K++ + +F YGFN+SH+ AY+ +S++ ++KAHYPA F Sbjct: 685 EVMFINGAMKKGYTHEVAKKVYAYIMEFGDYGFNRSHAVAYSKMSFELAYIKAHYPAAFF 744 Query: 784 AAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGE 843 AA++ + + N K V E G+K+ PDIN + + +G I +G+ IK + + Sbjct: 745 AALLNSVIGNPRKTKDYVLEAKNKGVKVHHPDINISQSLY-ILRNGGIYFGLSCIKSLRK 803 Query: 844 GPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLG 903 ++ I++ R + G F+ + D R D + L R ++E LI SG FD G R L+ L Sbjct: 804 NFLQDILQERKRSGIFKNMEDFLQRIDKRYLKRELIEILIYSGVFDTFGQSRKELLAMLP 863 Query: 904 DALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTG 963 L + + ++F +LA + +E+ +L+ E LG YL+G Sbjct: 864 RLLSNIEL-----SGNNVELFSILAPKKTTVEKI-----EISNDELLEKENYYLGAYLSG 913 Query: 964 HPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRS 1023 HP+ +Y E+ R+ ++ + + K ++ + +++ TK G+++ T D++ Sbjct: 914 HPVEKY-AELIYLTNSTRVSQINESNKDKYVSMILQIKVIKIIRTKNGSQMAFVTAADQT 972 Query: 1024 GRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARG 1083 G +++ F +A ++ +LE I+++ G+V D + GL +T + M ++ R K Sbjct: 973 GNMDLTFFPNAYKRFSSVLEDGNIVLIEGRV---DITRGLAITISKAMLANDVRIK---- 1025 Query: 1084 LAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLL 1143 L + D R + L SG +PV + +++ + L S + Sbjct: 1026 -TYYLRLSKAFDTSKRRNLEKLMLQNSGNVPVIIVDEKSGKKKLLNKKLWL--SQDKIVY 1082 Query: 1144 NDLRGLIGSEQVELE 1158 N L L+G E V L+ Sbjct: 1083 NRLVELLGVENVVLK 1097 >UniRef50_C0YII7 DNA-directed DNA polymerase n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YII7_9FLAO Length = 1555 Score = 1000 bits (2586), Expect = 0.0, Method: Composition-based stats. Identities = 369/1072 (34%), Positives = 567/1072 (52%), Gaps = 101/1072 (9%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG--- 61 ++ + HS +S + + L+KKA+ PA+ + D N+ G KF A GA Sbjct: 247 KYFNFDNHSVFSTLTATSSINDLIKKASDENFPAVGMVDLGNMMGAFKFVSAVEGANADR 306 Query: 62 ------------------------------IKPIVGADFNVQCD--------LLGDELTH 83 + P+VG +F + D T Sbjct: 307 AKKHKEYLAKKQEAEENGTEFNEEEPVSEPLIPVVGCEFYISDRYEQKQFTKDDPDRRTQ 366 Query: 84 LTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSL 143 + +LA + GY+NL L S + +G+ P + R+ + + EG+I L+ G MGD+ ++ Sbjct: 367 VVLLAKDFNGYKNLAKLSSIGFLKGFYFGVPRVSRELIAQYKEGVIALTSGIMGDIPDAI 426 Query: 144 LRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVR 203 L +E ++++ F D +++++ P+EE + LA+ + ++A N+ Sbjct: 427 LNTGEQKGEELFKWWKDTFEDDFYVQIQNHKLPEEEHLNEVLLYLADKYNVKILAQNETF 486 Query: 204 FIDSSDFDAHEIRVAIHDGFTLDDP------KRPRNYSPQQYMRSEEEMCELFADIPEAL 257 + + D + +I I DG L P KR + + Y++S +E+ E F P+A Sbjct: 487 YTNKDDANIQDIVSCIKDGEKLTTPIGKGFGKRRGLATGEYYIKSSDEIKEAFLAYPDAF 546 Query: 258 ANTVEIAKRCNVTVRLGEYFLPQF--PTGDMSTED-----------YLVKRAKEGLEERL 304 E + + LP+F P + ED YL EG + R Sbjct: 547 DAYEEFTAKFKPYTLKRDVLLPKFDIPEEFIHAEDEVDGGKRGEMAYLTHLTYEGAKNRY 606 Query: 305 AFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGS 364 E ERL+ EL+VI G+PGYFLIV +F ++ GV VGPGRGS Sbjct: 607 G--------EEGITDEIKERLDFELEVIANTGYPGYFLIVQDFCNEARKMGVWVGPGRGS 658 Query: 365 GAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGR 424 AGS VAY + IT++DP+++DLLFERFLNPERVSMPD D+DF E RD+VI+ V + YG+ Sbjct: 659 AAGSAVAYCIGITNVDPIKYDLLFERFLNPERVSMPDIDIDFDDEGRDRVIKWVIEKYGQ 718 Query: 425 DAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPE- 483 V+QIIT+ + K+ I+D GRVL P + I+KLIP PGM +AKA +L Sbjct: 719 SQVAQIITYSVLGGKSAIKDAGRVLDVPIPDTNNIAKLIPSTPGMNIAKALAKYDKLKPE 778 Query: 484 -----------IYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDE 532 + D+ ++ A+K+EG RN G HA GV+I P +++ P+ Sbjct: 779 EQMLVDEMRYVLESPDDSRHGVLASAKKMEGCIRNTGIHACGVIITPEDVSNLVPVTIAA 838 Query: 533 EG-KHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPL 591 + V+QFD S E AGL+K DFLGLRTLTII AL+++ R + +D IPL Sbjct: 839 KDADILVSQFDNSVAESAGLLKMDFLGLRTLTIIKDALKLVKARHGVD----IDPDLIPL 894 Query: 592 DDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNF 651 DD K++ + + T +FQ ES GM+ ++ L+P F D+IA+ AL+RPGP++ + NF Sbjct: 895 DDAKTYQLFKEGRTVGIFQYESPGMQKYMRELKPTVFADLIAMNALYRPGPIK--YIPNF 952 Query: 652 IDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRA 711 I+RKHG EEI Y + L+ TYGI +YQEQVM ++Q L+ +T G AD LR+A Sbjct: 953 INRKHGIEEIVYDL-----PETEEYLKETYGITVYQEQVMLLSQKLANFTKGEADTLRKA 1007 Query: 712 MGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQT 771 MGKK+ + + K F EG KN +N E KI++ + FA Y FNKSHS YA ++YQT Sbjct: 1008 MGKKQIDVLNKMYPKFIEGGRKNNLNEERLEKIWNDWKAFAEYAFNKSHSTCYAFIAYQT 1067 Query: 772 LWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEI 831 +LKA+YPAE+MA+VM+ +++NT+ + +++C MG+ +L PD+N Y F VN+ G+I Sbjct: 1068 AYLKANYPAEYMASVMSNNINNTDSITMFMEDCKSMGVDVLGPDVNESQYKFSVNEKGQI 1127 Query: 832 VYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRL 891 +G+GAIKG+GEGP EAI R + G F+ ++D R ++N+RV E L+++GAFD L Sbjct: 1128 RFGLGAIKGIGEGPSEAITRER-ENGRFKNIYDFFERILPSQMNKRVAESLVLAGAFDEL 1186 Query: 892 GP-HRAALMN-------SLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQP 943 HR + +L ++ +++ + +F AEE + + A C Sbjct: 1187 DSFHRGQYFDIDMAGKTNLERLIRYGQSFQESKNEMEHSLFADFAEEVQIEQPKLAPCPE 1246 Query: 944 WPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVIT 995 WP L+ E+E +G YL+ HP++++ + + G + K + + + Sbjct: 1247 WPNMHKLNKEKEIIGFYLSAHPLDEFKYQFQFMQGQLSKKAVLEKNEEEKVV 1298 Score = 76.1 bits (186), Expect = 7e-12, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 72/161 (44%), Gaps = 4/161 (2%) Query: 991 GKVITAAGLVVAARVM-VTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILI 1049 GK T AGL+ RV + G ++ TL+D SG L + ++ LE R +I Sbjct: 1389 GKEYTVAGLITEYRVQDGFRSGEKVAFVTLEDYSGSYSFRLGDRDYMRLKEKLEVQRFVI 1448 Query: 1050 VSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHR 1109 + G + + +V+++ EA E++A+ +++ + + + L+ R L+ ++ Sbjct: 1449 FKIKF-AQVKDGRVFVNVVDVIELQEAFERFAKSISLVMDVMDVRPEDLDFFRTVLDRNK 1507 Query: 1110 SGTIPVHLYYQRADARARLRF-GATWRVSPSDRLLNDLRGL 1149 G + + + + + + V + L+ +++ L Sbjct: 1508 -GNQKLKFFIKNLEDDSHIEVQSMKHSVDLNGDLIKEIQLL 1547 >UniRef50_D0BKV5 DNA polymerase III, alpha subunit n=1 Tax=Granulicatella elegans ATCC 700633 RepID=D0BKV5_9LACT Length = 1112 Score = 1000 bits (2586), Expect = 0.0, Method: Composition-based stats. Identities = 340/1164 (29%), Positives = 591/1164 (50%), Gaps = 68/1164 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F L+V S YS++ V A LG LA+TD L G ++FY I+PI Sbjct: 3 FTILQVTSGYSLLRSTIDLYRYVMTAKELGYQKLALTDEGVLHGAIEFYNLCRNQNIEPI 62 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW---LI 122 +G F + + + + V A + GYQ+L L + ++ +D + Sbjct: 63 IGCLFQYKQWRNAEAFSSMIVYAKDEIGYQSLIELST------QYQKSKLVSKDMEKIIK 116 Query: 123 ELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY- 181 E +E L ++ + G A E +FP+ I G + Sbjct: 117 EASEHLQIVFPQENSEWALECSNGEVAFQRWLFEAEERYFPN------IHLGIESNQILP 170 Query: 182 --LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQY 239 L + + ++ ++ + D ++ + AI DG TL + S Q Y Sbjct: 171 IPLEELEAWGQDFSMKLLPFVKTFYLKAEDDFSYRVLKAIGDGETLSTTQAE--VSGQYY 228 Query: 240 MRSEEEMCELFADIPE--ALANTVEIAKRCNVTVRLGEYFLPQFPTGDMS-TEDYLVKRA 296 ++ E+ + + + I E + E + + LP+F T + +++YL + Sbjct: 229 LQDEKTLTQQSSTILEGKLVRQLEEFVDSLKWKLSKHKLLLPKFQTPEGKMSQEYLQEIC 288 Query: 297 KEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGV 356 ++ L+ ++ + EY+ RL EL +I+QMGF YFLIV + ++++ + G+ Sbjct: 289 QQSLK-----------DKELVKDEYESRLNYELSIIHQMGFDDYFLIVWDIMKYAHEAGI 337 Query: 357 PVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIE 416 GPGRGS AGSLV+Y L IT +DP+E+ LLFERFLNPER +MPD D+DF +R+ +++ Sbjct: 338 QTGPGRGSAAGSLVSYLLNITKVDPIEYQLLFERFLNPERYTMPDIDLDFPDNRREDILD 397 Query: 417 HVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFE 476 +V YG + V+QI TFGT +K +RDV RVLG SK IP G+ L A+E Sbjct: 398 YVRRKYGENHVAQIATFGTFGSKQALRDVCRVLGLTTVQAGEWSKAIPNQLGINLKTAYE 457 Query: 477 AEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKH 536 L + + + + + A ++EG+ R+ HA GVV+ +TD PL ++ + Sbjct: 458 QSKNLQTLVSRSPKNQLIFETACRIEGLPRHLSTHAAGVVLYDKPLTDVIPLIY-KDQQM 516 Query: 537 PVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKS 596 P+TQ+ VE GL+K DFLGL L+I++ ++E+ + + + IPLDD+K+ Sbjct: 517 PITQYTMKYVEQIGLLKMDFLGLTNLSILHDSIELTKSIY----QHEIILNEIPLDDEKT 572 Query: 597 FDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKH 656 ++ Q ++T +FQ ES G++ ++K+L+P ED+ A+ AL+RPGP++ +D FI RKH Sbjct: 573 LELFQMADTNGIFQFESDGIRRVLKKLRPTNLEDIAAVNALYRPGPMEQ--IDTFIKRKH 630 Query: 657 GREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKK 716 G+E + YP H L+ +L+ TYG+++YQEQVMQ+ ++G+TLG AD+LRRA+GKK Sbjct: 631 GQEVVKYP-----HPILESILQSTYGVMVYQEQVMQVTSQMAGFTLGQADILRRAIGKKD 685 Query: 717 PEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKA 776 + + +++ F EGA GI+ A +++ +E+FA YGFN+SH+ AY+L++YQ + KA Sbjct: 686 AKVIETEKAHFIEGAIGKGIDVASATEVYQYIERFANYGFNRSHAFAYSLLAYQLAYFKA 745 Query: 777 HYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIG 836 HYP F A++ D + K+ E + G+ I P IN+ + + DG I G+ Sbjct: 746 HYPRAFYTAILRFVGDRSPKLQTYFIEAKQRGISIKNPSINTSVDDYTATIDG-IFIGLN 804 Query: 837 AIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRA 896 AIKG+ I+ I+ R + G F + D R + + VLE LI +GAFD LG +RA Sbjct: 805 AIKGLRRDFIQEILTQRKQNGPFIDFMDFAFRIGKRYCKKEVLEALIDAGAFDELGKNRA 864 Query: 897 ALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERET 956 L ++ +++ H A+ E E++ Y + ++ E Sbjct: 865 TLRATIDAVIESVKFHGSNIAL----------ELNEEMYPKYFEEEDSNIIEKIEREIAV 914 Query: 957 LGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGI 1016 LG ++ P Y + + + R+ ++ + K+++ G++ R TK+G + Sbjct: 915 LGFPVSAFPTEPY-EILYKEQKANRISTIYES---KLVSVLGILKNIRKTRTKKGEPMAF 970 Query: 1017 CTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEA 1076 T+ D +G ++ ++F + LLE+++++++ G+ S + ++ +EV+ + E Sbjct: 971 GTIQDETGEIDFVVFFEVYPIVFSLLEENQLVLLKGK-SRKNLQSKWQVQVQEVLSLLEV 1029 Query: 1077 R---EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGAT 1133 + + I +T++ ++ +++R + + G V LY + D ++ F + Sbjct: 1030 EGLAQATSIKCYIKITEKLQTKEVFDQIRNVIINN-PGDTTVLLYIESKDQLLKMNFNSG 1088 Query: 1134 WRVSPSDRLLNDLRGLIGSEQVEL 1157 V + L ++G + V++ Sbjct: 1089 LAVDA--ETIKALSSIVGEKNVKI 1110 >UniRef50_B2GC21 DNA-directed DNA polymerase III alpha subunit n=3 Tax=Lactobacillus fermentum RepID=B2GC21_LACF3 Length = 1099 Score = 999 bits (2582), Expect = 0.0, Method: Composition-based stats. Identities = 374/1163 (32%), Positives = 583/1163 (50%), Gaps = 79/1163 (6%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FV L V S YS+++ + A LV A G A+ + D L G V F + AG+ P+ Sbjct: 3 FVPLAVKSMYSLLEAPVRPAELVAVAKERGYQAVGLVDARVLYGAVNFVRRANQAGLHPV 62 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 +G + + +T+LA GYQNLT L ++A + + L E + Sbjct: 63 IGVSLPLT---FAEGTLDVTLLAKGAVGYQNLTRLSTRAMTDRANQP---LTIEDLREGS 116 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 185 + L+++ ++ +G + A + E +L + E L A Sbjct: 117 DDLVVIVAPQLMLLG--VSEQTYAQLGEVAD----------YLGINLDFTAAERQDLQAV 164 Query: 186 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 245 AE GLP++A V +++ D+ A ++ AI G T++DP + + + ++R EE Sbjct: 165 ---AERCGLPLIAFEPVEYLNEDDYFATQVLRAIKAGHTIEDPLKASQRTGRHWLRPAEE 221 Query: 246 MCELFADIPEALA--NTVEIAKRCNVTVRLGEYFLPQFPTGDMS-TEDYLVKRAKEGLEE 302 + + A A TV +A+RC V LP FPT DYL + + GL + Sbjct: 222 VAAAYRAAGLAEAAAQTVAVAERCQVHFADQTPVLPAFPTPAGQGVADYLRELCQRGLAK 281 Query: 303 RLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGR 362 R P EY RLE EL VI+QMGF YFLIV + + ++ + + GPGR Sbjct: 282 RKLAGDP---------AEYQARLEHELTVIHQMGFDNYFLIVWDLMNFAHQHQILTGPGR 332 Query: 363 GSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMY 422 GS AGSLVAYAL ITD+DPL++ LLFERFLNPER MPD D+D +R++V+ ++ Y Sbjct: 333 GSAAGSLVAYALAITDVDPLQYGLLFERFLNPERAQMPDIDLDLPDNRREEVLNYLHHHY 392 Query: 423 GRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIP--PDPGMTLAKAFEAEPQ 480 G + V+QIITFG++ K V+RDV RV P VD +S++I P TLA E+ Sbjct: 393 GHERVAQIITFGSLGTKQVLRDVSRVFNLPKYQVDSLSQVIDRVKGPHQTLADLLESAQP 452 Query: 481 LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEE-GKHPVT 539 + + + V L+++A KLEG+ R+ HA GVV+A + PL E G VT Sbjct: 453 VQNLARDSKLVACLLEVAAKLEGLPRHDSIHAAGVVLAAEPLIKTVPLQAGNEPGAMLVT 512 Query: 540 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 599 QF+K VE GL+K D LGLR LT + AL +I++ +P D+ I L+D+ + + Sbjct: 513 QFEKDTVESLGLLKIDLLGLRNLTTVETALNLIHQH-----QPDFDLTHIALNDRPTLAL 567 Query: 600 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 659 R +T+ +FQ ES G++ + L PD FE+++A+ AL+RPGP+ + +++FI RK G+E Sbjct: 568 FDRGQTSGIFQFESSGIRQTLVNLHPDNFEEIVAVNALYRPGPMDN--INHFIARKKGQE 625 Query: 660 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 719 ++ P + L P+L PTYGI++YQEQVMQ+A V+ G++LG AD+LRRAM KKK Sbjct: 626 AVNLPA-----KELAPILAPTYGILVYQEQVMQVAAVMGGFSLGEADLLRRAMSKKKLAT 680 Query: 720 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 779 MA + F GA K G +A ++F +++FA YGFN+SH+ AY+ ++++ +LK H+P Sbjct: 681 MASMKEAFLAGANKRGYPNAVAEQVFAYIDQFANYGFNRSHAVAYSKMAFEMAYLKVHFP 740 Query: 780 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 839 AEF+AA+M + D T KV E ++G+ P IN + D E+ G+ IK Sbjct: 741 AEFLAALMETNPD-TSKVWAYFSEAKQLGITTHGPAINQSQERVSLVDQ-ELWLGLDMIK 798 Query: 840 GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 899 G+ I AIIE RN+ G +++L DL R D K + LI +GA D LG +RA + Sbjct: 799 GLRRDFIRAIIEERNQHGPYQDLPDLVNRLDAKWHKEDLFVPLIDAGALDHLGYNRAEMA 858 Query: 900 NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 959 L L+ A+ + A +P V L E LG Sbjct: 859 EGLKAILEGAEYAGLGLG----------------MAPVVAQRNEYPLAVRLAREHAVLGT 902 Query: 960 YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRG-NRIGICT 1018 YL+GHP++QY + ++L + + + +V R + TKR + T Sbjct: 903 YLSGHPVSQYQDLRTK----LKLPTVAQLRPKQRVRLVLMVTRMRKVTTKREHKPMAFLT 958 Query: 1019 LDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEARE 1078 D +G +EV +F + + L + I +++ + + G +++ A +V D Sbjct: 959 ASDETGAVEVTIFNRLFTQLEGELRVNGIYLITAK--TEQREGQVQLLADQVTDAQVVNR 1016 Query: 1079 KY---ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWR 1135 + + L + + ++ L +G +PV +Y + Sbjct: 1017 ELHPADHRWVLRLPSGVAQTTVTDGIKA-LAKEHAGNVPVVIYDPVTQKATQ--LPGQLW 1073 Query: 1136 VSPSDRLLNDLRGLIGSEQVELE 1158 ++ + L L+G + + Sbjct: 1074 LAKQRVVQEGLINLVGRSNLAFQ 1096 >UniRef50_B1HX19 DNA polymerase III subunit alpha n=2 Tax=Bacillaceae RepID=B1HX19_LYSSC Length = 1020 Score = 991 bits (2563), Expect = 0.0, Method: Composition-based stats. Identities = 372/1060 (35%), Positives = 552/1060 (52%), Gaps = 56/1060 (5%) Query: 12 HSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFN 71 H+ ++ + L+ A AI + L GL+ F A A I ++G N Sbjct: 2 HTSADLLKSTIRLEQLIPFLLEQKTQACAIVNTK-LYGLLPFCKAMQQAKIHAVMGLSVN 60 Query: 72 VQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEGLILL 131 VQ D L + A + GYQ L + S A R G ++ WL G + L Sbjct: 61 VQWH---DTTLPLVLYAQSQEGYQQLLKISSAASIREDG----VLPWKWLEGYAAGCLAL 113 Query: 132 SGGRMGDVGRSLLRGNSALVDEC---VAFYEEHFPDRYFLELIRTGRPDEESYLHAAVEL 188 L + A + + V+ F +++ + R G + VE Sbjct: 114 -----------LSSDDLAELKDWHGVVSALAHLFQHHFYMGITRPGGVALANENE-LVEW 161 Query: 189 AEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM-RSEEEMC 247 E + +P+VA F+ D A+E+ AI G L D Q Y + +E Sbjct: 162 CEGQRIPLVAVQSCYFLRPEDHFAYEVARAIDTGDKLGDT--MLTAKLQGYFAPTAQEWQ 219 Query: 248 ELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTG-DMSTEDYLVKRAKEGLEERLAF 306 F D PE L ++ C + +P+FP + E LVK A GLEER Sbjct: 220 SWFTDRPEWLETCGQMLASCRAIIPEMSVQMPKFPVPVGETAESLLVKEAFSGLEERF-- 277 Query: 307 LFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGA 366 +L Y ERL EL++I MGF YFL+V +F++++KDN + GPGRGS A Sbjct: 278 ------NQLDIPYGYRERLRYELEIICSMGFADYFLVVADFMRFAKDNRILTGPGRGSSA 331 Query: 367 GSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDA 426 GSLVAY+L IT +DPL + LLFERFLNPER+S+PD D+DF KR QVI++VA YG+ Sbjct: 332 GSLVAYSLAITQVDPLAYGLLFERFLNPERISLPDIDIDFVDSKRHQVIQYVAQKYGKGN 391 Query: 427 VSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIYE 486 V+QIITFGT++AKAV RDV RV G +++ISK+IP PG+TL KA E L E Sbjct: 392 VAQIITFGTLSAKAVARDVARVFGFGAEVLEKISKMIPNKPGITLQKALEESYDLQEWLS 451 Query: 487 ADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDV 546 D + + ++A+KLEG+ RN+ HA G+VIAP+ + + P+ EG + TQ+ DV Sbjct: 452 EDHQHQRWFEVAQKLEGLPRNSSTHAAGIVIAPSSLVNTVPIEDGHEGIY-CTQWPMGDV 510 Query: 547 EYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETT 606 E +GLVK DFLGLR LTI LE I K G P +D IP+ D+K+F +LQ +T+ Sbjct: 511 EASGLVKMDFLGLRNLTI----LEQIRWSIYKAGGPWIDFERIPMHDEKTFQLLQSGDTS 566 Query: 607 AVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDV 666 +FQLES GMK ++ + P F D++A+ AL+RPGP++ + + RK G+E + P Sbjct: 567 GIFQLESEGMKQALRDIHPTQFLDIVAVNALYRPGPME--FIPVYARRKAGKELVVMP-- 622 Query: 667 QWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSV 726 H L+P+L+ T+G+I+YQEQ+++IA VL+G+++G AD+LRRA+ KK + + +Q+ Sbjct: 623 ---HPVLEPILQETFGVIVYQEQIIKIASVLAGFSMGQADLLRRAVSKKNRQVLEEQQVT 679 Query: 727 FAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAV 786 F +GA K G + +A ++++L+ +FA YGF KSH+ AY+++SYQ +LKAH+P F AA+ Sbjct: 680 FVQGALKQGYDQHVATEVYELIVRFADYGFPKSHAVAYSIISYQMAYLKAHFPQSFYAAL 739 Query: 787 MTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPI 846 ++ N +K+ LV E G+ PP + +F V +G I Y + IKGV I Sbjct: 740 LSNATGNVDKIQQLVQEAKDKGIPFYPPSLKDSTKYFTVEQEG-IRYSLAGIKGVPHTFI 798 Query: 847 EAIIEARNKGG-YFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDA 905 E+I R LFDL + +V+E LI +GA D L RA L+ ++ A Sbjct: 799 ESINTLRQTNPQALYNLFDLAVALSAQHFKPKVIESLIYAGALDYLEKDRAVLIMTIDAA 858 Query: 906 LKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHP 965 LK A+ E I + A E + Y P++ L E+E+LG Y++ HP Sbjct: 859 LKHAELLRPNEDIDIS-----TATEFNFGKPKYMQVDDMPQKEKLIHEKESLGFYISAHP 913 Query: 966 INQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGR 1025 + Q +++ G + G++ + + TK+G ++ L D G Sbjct: 914 VTQERPYWADV--NCTSRELKQMRDGTYVKMIGVMEEVKKIRTKKGEQMAFVQLQDEHGS 971 Query: 1026 LEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKM 1065 + LF Q LL +D IL+V G + +K+ Sbjct: 972 VSATLFPQVFQFVQDLLVEDEILVVEGNLERRFGKPQIKV 1011 >UniRef50_C4FWP2 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FWP2_9FIRM Length = 1116 Score = 990 bits (2559), Expect = 0.0, Method: Composition-based stats. Identities = 345/1152 (29%), Positives = 565/1152 (49%), Gaps = 56/1152 (4%) Query: 9 LRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA 68 VHS S++ V+ A G L + D +L G + FY AG+K ++GA Sbjct: 3 FNVHSANSLLASTLTIPSYVEAAKERGYQILGLADVHSLQGALDFYNRCQAAGLKAMIGA 62 Query: 69 DFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEGL 128 + L ++ V A N GY L LI + + P D+L + L Sbjct: 63 TIKLPGALKQTQVYPFLVYALNQAGYYELIGLI---RRLSHQPLSPGAIWDYLTQSCHNL 119 Query: 129 ILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRTGRPDEESYLHAAVE 187 +S G +V ++L+ + E+ F P +L + P A Sbjct: 120 FYISCGHASEVEQTLIHSGDQEASLVLERLEQVFGPGNVYLGVAAF--PYNPVEGEALKA 177 Query: 188 LAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMC 247 A+A +P+V V ++ D + ++ AI TLD R Y ++ E Sbjct: 178 FAKAYQVPLVVGQGVSTLNQGDAFSLKVLEAIGANETLDVELRAMQGVHYVYNWADLEAQ 237 Query: 248 ELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKRAKEGLEERLAF 306 + + + L N+ ++A R V++ + FLP+FPT D +L + LE Sbjct: 238 YVRLGLADCLTNSRQLADRMQVSLPQNQAFLPKFPTPDHLPASQFLRDLTQSALE----- 292 Query: 307 LFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGA 366 + R Y +RL+ EL+VI+ MGF YFLIV + I + + + + VGPGRGS A Sbjct: 293 -----DLRPADLAVYQQRLDYELEVIDSMGFSDYFLIVWDIIVYCQSHAIRVGPGRGSAA 347 Query: 367 GSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDA 426 GSLV+Y L IT +DP++++LLFERFLNPER +MPD D+D KR QV+ +V + YG++ Sbjct: 348 GSLVSYLLGITRVDPIQYNLLFERFLNPERYNMPDIDMDIPDNKRQQVLHYVVERYGQEQ 407 Query: 427 VSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIYE 486 V+QI T GT A+A +RD RVLG + ++ IP + ++L +A++ L ++ Sbjct: 408 VAQIATLGTFGARAAMRDTLRVLGADSETLRVWARAIPKELDISLPQAYQKSAALRQLVS 467 Query: 487 ADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDV 546 E + L +A+ +EG+ R+ HA VVI + P+ + +TQF DV Sbjct: 468 QSETNQQLFQVAQTIEGLPRHISTHAAAVVIHDQALDQVIPVVERPN-QPLMTQFTMYDV 526 Query: 547 EYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETT 606 E GL+K DFLGLR L +++ ++ + K +A DI AI ++D ++ + + ++T Sbjct: 527 EKVGLLKMDFLGLRNLNLLDTIIKQVQKSQA-----DFDIEAISMEDAQTLALFRAADTN 581 Query: 607 AVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDV 666 VFQ ES G+K ++++LQP+ FED++A+ ALFRPGP++ +D+++ R+HG+E Sbjct: 582 GVFQFESDGIKQVLRKLQPERFEDIVAVNALFRPGPMKQ--IDHYVARRHGKE-----SY 634 Query: 667 QWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSV 726 Q H L+ +L PTYGII+YQEQVMQ+ Q ++G++LG AD+LRRAMGKK+ + MA++R Sbjct: 635 QAIHPILEEILAPTYGIIVYQEQVMQVCQRMAGFSLGQADLLRRAMGKKQADVMAREREH 694 Query: 727 FAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAV 786 F GA + GI E+A +D + +FA YGFN+SH+ Y+ +++Q +LK HYP F A+ Sbjct: 695 FIRGAREQGIEPEIASATYDYIYEFASYGFNRSHAVVYSTLAFQLAYLKVHYPLAFYQAL 754 Query: 787 MTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPI 846 + N + + E R +L ++N F V+ ++ G+ AI+ + + Sbjct: 755 LNMGSSNQTTMADYILEAKRHTGPLLGLNLNESQIGFSVSGQ-QLQVGLSAIRTLRHDFV 813 Query: 847 EAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDAL 906 I+E R G + L R K L LE LI GAFD G +R L+ +L + Sbjct: 814 SHIVEDRQLLGPYTGLLHFMQRLPKKWLKHEWLESLISVGAFDYTGMNRPTLLKNLDKLM 873 Query: 907 KAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPI 966 ++ + G +F ++E + W D E E LG L GHP+ Sbjct: 874 QSV-----TFSGGNLSLF-------PELEPRIEWVEDWNPSQKRDKEVEILGFSLEGHPV 921 Query: 967 NQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRL 1026 Y + + + ++D+ + + LV RV+ TK+ + L+D + Sbjct: 922 ATYQAFAKSHPNLLSVRDILAAQPNLKVQTLVLVKGIRVINTKKQELMAFLELEDEVASI 981 Query: 1027 EVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYA----- 1081 ++F + Y LL++ ++L+V G V D G ++ + + ++E K Sbjct: 982 SGVVFPQSYRHYVSLLKEGQVLLVEGTVELD-RQGRHQLIIKRLSPVNEQEAKAPNSPNE 1040 Query: 1082 ---RGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSP 1138 + + + Q L LR+ + + PV + + R + +RVS Sbjct: 1041 HPFQRCFVQVKAFQDLKPFLPGLRKFADQYSG---PVAMILVDGN-RQTFQLDDAYRVSY 1096 Query: 1139 SDRLLNDLRGLI 1150 + +L L+ Sbjct: 1097 GQKAQAELAKLL 1108 >UniRef50_Q67N73 Error-prone DNA polymerase n=1 Tax=Symbiobacterium thermophilum RepID=DNAE2_SYMTH Length = 1085 Score = 988 bits (2555), Expect = 0.0, Method: Composition-based stats. Identities = 371/1120 (33%), Positives = 565/1120 (50%), Gaps = 89/1120 (7%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL VHS +S +DG ++ L+ +AA GMPALA+TD N+ G V+F AGI+PI Sbjct: 3 FVHLHVHSPFSFLDGASRLDDLIAEAALHGMPALALTDHNNVSGAVRFQRKAQEAGIQPI 62 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQR---------------GYG 110 GA+ ++ HLT+LA GY NL LI+ A+ G+ Sbjct: 63 QGAELTLEG------GYHLTLLATGPKGYANLNRLITAAHLGQEPRATPGAMFALAPGHD 116 Query: 111 AAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170 P L +GLI LSG R G++ +LRG A + Y FP R++LEL Sbjct: 117 RLQPACPLSALSHDTDGLIALSGCRRGEIPSLILRGRLAEAEAAARRYAAWFPGRFYLEL 176 Query: 171 IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230 P E++ A +L EA GLP+V T++V +F H++ + +D P Sbjct: 177 HDERLPGEQALNRALRDLGEALGLPLVVTSNVHHRTREEFFVHDLLTCVRTLTRIDQPHP 236 Query: 231 PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMS-TE 289 R + Q+Y++ E M E F + PEA+ NT+ IA+RC + L P+F T D S Sbjct: 237 ERPLNDQRYLKPPEVMIERFREFPEAVKNTLAIAERCRPVLDLDARLHPEFQTPDGSHPA 296 Query: 290 DYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQ 349 YL +G R + RLE EL +I ++G+ YFL+V + ++ Sbjct: 297 AYLTHLVYDGAARRYGRI----------TERIRRRLEHELTIITRLGYEDYFLLVWDVVR 346 Query: 350 WSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCME 409 ++++ G+ GRGS A S VAY L ITD+D +E LLFERF++ ER PD D+DF Sbjct: 347 FARERGIRCA-GRGSAADSAVAYCLFITDVDAIERGLLFERFMSLERAQKPDIDIDFDAR 405 Query: 410 KRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGM 469 +RD+V +V YG D V+ + T+ T A++ +RD+G+ +G +D ++K IP G Sbjct: 406 RRDEVAAYVYRKYGADHVASVCTYNTFQARSAVRDLGKAMGFQEADLDYLAKRIPWHAGA 465 Query: 470 T-LAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPL 528 + P+L + + + L+ A ++ R G H GG+VI+ + + PL Sbjct: 466 DEILTVMARYPELRQSGIPWHKFEQLVQAAERVARFPRFIGTHLGGLVISRRPLLEVTPL 525 Query: 529 YCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAA 588 +G+ V QFDK VE GLVK D L LRT T ++ A+ I +D Sbjct: 526 QMAAKGQ-VVCQFDKEYVEDLGLVKLDLLSLRTFTAVDDAVRAIG---------DIDYEQ 575 Query: 589 IPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMV 648 IP D +++ML E+ VFQLES + L RL+PD FED++A VA+ RPGP++ MV Sbjct: 576 IPHGDAATYEMLGVGESIGVFQLESPAQRALQARLKPDRFEDIVASVAIIRPGPIKGNMV 635 Query: 649 DNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADML 708 + F+ R+HG+EE++Y H LKP+LE TYG++L+QEQV++IA ++G+T G AD L Sbjct: 636 EPFLARRHGKEEVTY-----LHPKLKPILEKTYGVVLFQEQVIEIATAVAGFTPGEADQL 690 Query: 709 RRAMGK-KKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALV 767 RR M + E+M +F + A G++ +A IF ++ +A YGF ++H+AA+A Sbjct: 691 RRVMTHARNREDMEAIGRLFRQKAAAAGVDPAVADTIFSYIQGYASYGFCEAHAAAFANT 750 Query: 768 SYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVND 827 +Y+T +L HYPAE+ AA+M+A + L E R G+ +LP DIN F V + Sbjct: 751 AYKTAYLVRHYPAEYFAALMSAQPMGYYPINTLAVEARRRGVGLLPVDINRSEEAFTVEE 810 Query: 828 ----------------------DGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDL 865 I G+ A+KGVGE AI+ AR+ GG FR L DL Sbjct: 811 WSREAWEAFWGMEPFAPEYPATGKAIRIGLRAVKGVGEPAAAAILAARD-GGEFRSLADL 869 Query: 866 CARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFG 925 RT + R LE L+++GAFDRL +R A + + L+ A++ + GQA + Sbjct: 870 VRRTGG-AVPRGPLEALVLAGAFDRLHSNRRAALWQVAHLLE-AERIRQERGAGQAGLLD 927 Query: 926 VLAE---------EPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERY 976 A Q + + E E GL + H ++++E Sbjct: 928 GDAPGLGAQAAEALEAASPQGTPAIADFGAAERYLKEYELTGLMVRTH-FMRFVRERLAR 986 Query: 977 VGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALD 1036 G + +++ G+++ AGL V T+ G + +L+D +G +++ +F D Sbjct: 987 EGYLTAQEVRQRRAGELVKVAGLPVCPHRPPTRSGKIVVFLSLEDETGLIDLTIFEDVYQ 1046 Query: 1037 KYQQLLEKD--RILIVSGQVSFDDFSGGLKMTAREVMDID 1074 +Y L+ D L G+V D G + +T + +D Sbjct: 1047 RYGHLIFTDPRPPLAALGRV--DRRGGHVSITVNRLRLLD 1084 >UniRef50_B1MYD7 DNA polymerase III, alpha subunit n=3 Tax=Leuconostoc RepID=B1MYD7_LEUCK Length = 1113 Score = 988 bits (2554), Expect = 0.0, Method: Composition-based stats. Identities = 339/1163 (29%), Positives = 578/1163 (49%), Gaps = 64/1163 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 + L++ S YS++ +++ A A+A+TD + G V+FY GIKP+ Sbjct: 2 YAPLQILSAYSLLKNPNTITQIIRTAKDRHYGAIALTDINVMYGAVEFYQKAKDMGIKPL 61 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 G V + L ++A N TGYQNL L S A + D L++ Sbjct: 62 FGVTLQVNGLVNTSTTFPLVLIAENQTGYQNLMWLSSAKMT----AQDTTMTFDLLVDHL 117 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPD-RYFLELIRTGRPDEESYLHA 184 +G+ ++ ++ + L+ VD D ++ + P Sbjct: 118 QGIHVILP-HDSELSQ-LIASEYQEVDNYWHQLSNKIDDQHLYIGIHPQLAP---QIRAR 172 Query: 185 AVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEE 244 + ++ +VA +DV ++++ D ++ AI LD K S + E Sbjct: 173 LAQFSQIHQASLVALDDVDYLNADDAFTTQVLKAIDANVKLDGIKALAQQSGSHVLVDFE 232 Query: 245 EMCELFAD---IPEALANTVEIAKRCNVTVRLGEY-FLPQF--PTGDMSTEDYLVKRAKE 298 ++ + + D + A N ++ R +V++ + LP F P + +YL A Sbjct: 233 QLRQSYQDDEALKLAFKNNEQLVARSHVSLTFKQTTALPPFQLPAETANAAEYLKNLAMT 292 Query: 299 GLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPV 358 GL ++ ++ +Y ERL EL +IN++GF YFLIV + + ++K N + + Sbjct: 293 GLNAKMHI-------TSQQHAQYLERLHNELAIINKLGFNDYFLIVWDIVNFAKQNHIQL 345 Query: 359 GPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHV 418 G GRGS AGSLVA++L ITD+DP++F LLFERFLN ERV MPD D+D+ +R+ V+ ++ Sbjct: 346 GVGRGSAAGSLVAFSLGITDIDPVKFGLLFERFLNAERVQMPDIDIDWPDNRREDVLAYL 405 Query: 419 ADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG---MTLAKAF 475 YG+ +QIITFGT+AAK +RD RV G + RIS +P +T+ +A Sbjct: 406 HQKYGQRNFAQIITFGTLAAKQALRDTARVFGVSQTMMSRISNAVPQGKQGRRVTIGEAL 465 Query: 476 EAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGK 535 + L + + L+ A+K+EG+ RN HA GVV++ + + + P+ E Sbjct: 466 KDSDALSRVLGDIDNGDLLLKTAQKIEGLPRNYSTHAAGVVLSDSPLVNTLPVQSGSES- 524 Query: 536 HPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKK 595 +TQF+K+ VE GL+K D LGL LTI+ L + DI +PLDDK Sbjct: 525 RLLTQFEKNPVEALGLLKIDILGLSNLTILAQTLYYAKQYLPDR----FDIGHVPLDDKA 580 Query: 596 SFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRK 655 + + + +T VFQ ES G+K ++K+LQP FE ++A+ AL+RPGP S +++FI R+ Sbjct: 581 TLALYAKGDTNGVFQFESSGIKHVLKQLQPATFEHIVAVNALYRPGP--SRNIESFIKRR 638 Query: 656 HGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKK 715 HG+E ++ D SLK +L PT+GII+YQEQVM +A+ +G+TLG AD+LR AM KK Sbjct: 639 HGQETVTVLD-----PSLKTILAPTFGIIVYQEQVMLVAEKYAGFTLGEADVLRSAMSKK 693 Query: 716 KPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 775 K +MA F GA G + A +IF +++FA YGFN+SH+ AY+ +S+Q ++K Sbjct: 694 KLAQMADMHGKFISGAVSQGHDQSQAEQIFAYIDEFANYGFNRSHAVAYSKLSFQLAYMK 753 Query: 776 AHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGI 835 HYP F A++ A++ + +K+ V E G+ + P++N + +N D + G+ Sbjct: 754 VHYPIAFFTALLNANLGSPDKIRLYVTEAKARGIVVKAPNVNQSDRFWTINKDF-LQMGL 812 Query: 836 GAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHR 895 +IKGV + A+I+ R G F + L R K R VL +++ +GA D G +R Sbjct: 813 HSIKGVRTDFVAALIDERKNNGPFESIQSLVRRLPEKFRKRDVLTQMVYAGALDSFGYNR 872 Query: 896 AALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERE 955 L+ +L D ++AA FG L E L E+E Sbjct: 873 VELVTALDDLIEAAS-------------FGELI----LSETKIKKMADITLTEKLVHEKE 915 Query: 956 TLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIG 1015 T+G+ L+GHP++ + I + ++ D+ + + ++ + R TK+G + Sbjct: 916 TIGVNLSGHPLDTF-ASIIKQNDFQQIADVSLAKE--PVKMIVMIDSVRQTRTKKGETMA 972 Query: 1016 ICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDE 1075 T+ D +G + + +F K +L+ ++ ++G D + G + + AR++ + Sbjct: 973 FVTVSDTTGTISLTIFHQLFVKISDMLKTGNMIQITG--QSDSYKGKMSVIARQITAPPQ 1030 Query: 1076 AREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWR 1135 + + + ++ + + + H G P+ +++Q++D ++ A + Sbjct: 1031 IPTAESGTWFLRFDEEHDNEANRQAVIEIFKKHH-GDNPIIIHWQKSDQNQQI--DAKFW 1087 Query: 1136 VSPSDRLLNDLRGLIGSEQVELE 1158 ++ ++ +L L+G + + Sbjct: 1088 MNSETAIIRELAPLLGYDNIVFR 1110 >UniRef50_C5RC77 DNA-directed DNA polymerase III, alpha chain n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RC77_WEIPA Length = 1122 Score = 986 bits (2550), Expect = 0.0, Method: Composition-based stats. Identities = 359/1168 (30%), Positives = 584/1168 (50%), Gaps = 66/1168 (5%) Query: 7 VHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIV 66 V L+ + +S++ L+K G A+A+TD+ L G+ FY A A I+PI+ Sbjct: 2 VPLQTMTAFSLLRSPMTPQQLIKAVQDKGYQAVALTDYNVLYGMYDFYQAAQAADIQPIL 61 Query: 67 GADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNE 126 G + L + + L N GY NL + S + + D L Sbjct: 62 GLTAELIG-LQSSQSYPVIFLVENQVGYHNLLQISSAINTQNEK-----MTLDDLKSYLS 115 Query: 127 GLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPD--RYFLELIRTGRPDEESYLHA 184 GL ++ G++ ++L G + D FL + R E+ L + Sbjct: 116 GLYIILPSI-GEL--AVLLGTEPERAMTLVKTVTALADATHVFLGVSLDMR---EAMLQS 169 Query: 185 AVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEE 244 ELA+ G ++A +V + ++SD + ++ + G + + + + Y++ Sbjct: 170 IKELAQNTGTRIIANENVLYPNASDQFSAQVIQKLGQGEIISNVGLAQKQAATAYLKEST 229 Query: 245 EMCELF--ADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTG-DMSTEDYLVKRAKEGLE 301 + + + +A+ NT IA V + +P++ T S+ DYL + A GL Sbjct: 230 DWANEYNSRGLSDAVENTDWIAAHSYVVLEQSSVTVPKYETPQGQSSSDYLAELATTGLT 289 Query: 302 ERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPG 361 RL + D Y RL+ EL++IN++GF YFLIV + + ++ + GPG Sbjct: 290 NRLHDMAVDATP-------YKARLKEELRIINELGFADYFLIVWDVLNYAHKKSIRTGPG 342 Query: 362 RGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADM 421 RGS AGSLVAY L ITD+DP+ +DLLFERFLNPER MPD D+D +R+++++++ + Sbjct: 343 RGSAAGSLVAYVLWITDVDPIAYDLLFERFLNPERHQMPDIDIDIPDNRREEILDYLHEH 402 Query: 422 YGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQL 481 YG + V+QIITF TMA +AVIRDV RV G +D +SK +P +L ++E+ Sbjct: 403 YGHERVAQIITFSTMAQRAVIRDVARVFGLNPTQIDNLSKSMPRGTA-SLQASYESSLPF 461 Query: 482 PEIYEADE-EVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQ 540 + + L A KLEG+ RNA HA GVV++ + ++ P+ ++G VTQ Sbjct: 462 RNALLDLPVDGQLLYQTALKLEGLPRNASLHAAGVVLSAEPLANYMPVQLGDDG-RLVTQ 520 Query: 541 FDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDML 600 K VE GL+K DFL L L I++ A+ I K IA++ LDD+ + + Sbjct: 521 LPKGPVEALGLLKMDFLALSNLNILDIAIREIQK---IPDHESFSIASVSLDDQATLRLF 577 Query: 601 QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE 660 Q T VFQ ES GMK+++++L+PD FED++A ALFRPGP+Q+ + +F+ RKH E+ Sbjct: 578 QNGLTNGVFQFESGGMKNILRQLRPDSFEDIVAANALFRPGPMQN--IPHFVARKHQEEK 635 Query: 661 ISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM 720 PD S+ +L PTYGII+YQEQVM++A+ +G++LG AD+LRRAM KK +++ Sbjct: 636 QDVPDA-----SMAEILAPTYGIIVYQEQVMRVAERFAGFSLGEADLLRRAMSKKDHDKI 690 Query: 721 AKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA 780 A +S F +GA + ++A ++F +E FA YGFN+SH+ AY+ +++Q ++KAHYPA Sbjct: 691 AAMQSKFIDGAVGRHHDQQVAEQVFSYIETFAQYGFNRSHAVAYSKLAFQLAYIKAHYPA 750 Query: 781 EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG 840 F AV+ + + +KV + E + IL P +N + +N GE+ G+ +I G Sbjct: 751 AFYKAVLNDSIADHKKVGIYIAEAKLSHVTILRPSLNHSWQGYSMNKQGELQMGLASISG 810 Query: 841 VGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMN 900 + EA+I+ R +GG +R+L + R +K LE LI +GA D G +R L+ Sbjct: 811 LRRDFREALIQERQEGGQYRDLTNFIGRLPSKYRKVSQLEPLIYAGALDEFGFNRKTLLG 870 Query: 901 SLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLY 960 S+ + A + G E + +P L E E LG+Y Sbjct: 871 SMQGYIDAV------------GLAGESISLFESLTPKMHEVAEFPLNEKLGYEHEYLGVY 918 Query: 961 LTGHPINQYLKEIERYVGGVRLKDMHPTERGKV-ITAAGLVVAARVMVTKRGNRIGICTL 1019 L+GHPI YL I D+ G +T V + + TK+G+ + Sbjct: 919 LSGHPIEPYLAAIPENRRT----DIANLAVGMTSVTVVIYVQNVKKIRTKKGDPMAFVDG 974 Query: 1020 DDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREK 1079 D +G L + +F K + LL +++L+++G++ L+M A +V++ DE + Sbjct: 975 IDLTGTLSITIFPTVFKKIEPLLVNEKVLLITGKIEQQRGRDTLQMIANQVINGDELLAE 1034 Query: 1080 YARG---------LAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRF 1130 + + + D ++ L+ L H G PV + ++R ++ Sbjct: 1035 SSVSEKAAASTGQWYLRIMASAEDAGIMPALQNILRQHH-GANPVLIVFERD--HRKIAL 1091 Query: 1131 GATWRVSPSDRLLNDLRGLIGSEQVELE 1158 T+ ++ D +R ++G V + Sbjct: 1092 NETYWLTADDETGEAIRSILGENNVVFK 1119 >UniRef50_Q5WEF1 DNA polymerase III alpha subunit DnaE n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WEF1_BACSK Length = 1095 Score = 985 bits (2548), Expect = 0.0, Method: Composition-based stats. Identities = 375/1155 (32%), Positives = 606/1155 (52%), Gaps = 72/1155 (6%) Query: 10 RVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGAD 69 V+S+YS++ + LV+ A G AL++TD L G V F+ + AG+KP++G + Sbjct: 7 NVYSEYSLLQSTNRVDELVQAAKEAGYTALSLTDRHVLYGAVPFFQSCRKAGLKPLLGLE 66 Query: 70 FNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEGLI 129 V+ L +E+ + ++A N GY+ L ++ + G+ I+ + + Sbjct: 67 VTVR---LDEEIIPVRMVAKNEEGYRQL---VAHSTSLGFQTKQAAIELETWKANS---- 116 Query: 130 LLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPD-RYFLELIRTGRPDEESYLHAAVEL 188 + + + + + F+E F+EL G + H ++ Sbjct: 117 --TACFVFIPKEAFVAAK----GNWLHFWERLAGGLEAFIEL--AGGESD----HELIQF 164 Query: 189 AEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCE 248 A A +P VA RF+ D +++ AI G T + + + ++ + + E Sbjct: 165 ANAHQIPCVAAPPTRFLRKEDAPVYQLVRAIGAGTTTTHLELEEGWQ-RWHLPTANSLKE 223 Query: 249 LFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDY-LVKRAKEGLEERLAFL 307 F + +AL +A++ + + +P + + D L ++GL+ R + Sbjct: 224 RFPE--KALLQARALAEKVEPYLPEEKPRIPAYDGLTVEQADKRLETLCQQGLKARYKAV 281 Query: 308 FPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAG 367 E + RLE EL +I + G+ YFLIV +F+ ++K +G+ GPGRGS A Sbjct: 282 ----------SVEAERRLEHELAIIAERGYSSYFLIVADFVGYAKKSGILTGPGRGSSAS 331 Query: 368 SLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAV 427 S+VAY L ITD+DPL DLLFERFLNPER S+PD DVDF +RD+VI +V + +G D V Sbjct: 332 SIVAYTLFITDVDPLAHDLLFERFLNPERASLPDIDVDFPDYRRDEVIAYVRERFGHDRV 391 Query: 428 SQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISK-LIPPDPGMTLAKAFEAEPQLPEIYE 486 +Q++TFGT AA+A IRDVG+ L + FVDR++K LIP ++L +A E + Sbjct: 392 AQVLTFGTFAARAAIRDVGKALSIRHTFVDRVAKSLIPAS--LSLNEAQEKGV-FKGL-- 446 Query: 487 ADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDV 546 E+ L+ A+++EG+ R+A HA GV+I+ + + L +G H VTQ D + Sbjct: 447 ESPELDELLFFAKQIEGLPRHASTHAAGVIISDKPLNNKTALQLGIDG-HAVTQADMDSL 505 Query: 547 EYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETT 606 GLVKFDFLGLR LT++ L++I + L++ IPL+DK +F +LQ+ ++T Sbjct: 506 ARLGLVKFDFLGLRNLTLLERMLKVIEQEEGV----ALNLQHIPLNDKATFQLLQQGKST 561 Query: 607 AVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDV 666 +FQLES GM+ ++K+LQP FED++A AL+RPGP+ + +I KHG + P Sbjct: 562 GIFQLESAGMRQVLKQLQPSQFEDIVATSALYRPGPMA--FIPEYIRGKHGHTQAIVP-- 617 Query: 667 QWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSV 726 HESL+P++EPT+G+++YQEQ+MQ+ Q + Y+L AD+ RRA+ KK+ + + ++R Sbjct: 618 ---HESLRPIVEPTFGVLVYQEQIMQVVQATANYSLAEADLFRRAISKKQHDVIIQERHQ 674 Query: 727 FAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAV 786 F A +NG E A IF L+E+FA YGF KSH+ AY+ +SY +L+ H+PA F AA+ Sbjct: 675 FIHRAVENGFLPEEAEAIFSLIERFANYGFPKSHATAYSFISYWLAYLRVHFPAAFFAAL 734 Query: 787 MTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPI 846 ++ N EK+ ++E + G+++LPP + F + ++G+I +G+ I GV + Sbjct: 735 FSSVWQNHEKLYSYINEAKKEGIRVLPPSVCKSGLLFEL-ENGQIRFGLLPISGVNVQAV 793 Query: 847 EAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDAL 906 II R K LF A + +N+RV+E LI +GA D G RA L+ +L A Sbjct: 794 NEIISKRRKNSD-SNLFMFYAHVASTAVNKRVMEALIKAGALDEFGQSRATLLGNLDKAE 852 Query: 907 KAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPI 966 +Q +A +F + P +Y P + L+GERE LG YL+GHPI Sbjct: 853 AFVEQVRSFKASS-GGLFTIKPAVP-----AYLDVTPSTKMEDLEGEREVLGFYLSGHPI 906 Query: 967 NQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRL 1026 L+ + + G + L + P+ K + AG+V+ + +VTK+G + TL D SG Sbjct: 907 ENELERLAPF-GRIPLAECIPSR--KPVRIAGMVIDVKKIVTKKGEAMAFLTLSDESGEC 963 Query: 1027 EVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD-IDEAREKYARGLA 1085 + F A Y+ L ++ + G + + G + + D + + K + L Sbjct: 964 SCVAFPQAWKVYEGLFAPHALVFLEGVLE--ERQGKTQFIIHKAADVLQLNKNKKKQTLY 1021 Query: 1086 ISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLND 1145 I LT + L+ L+ L G+ V LY ++ AR R + V+P+ + L Sbjct: 1022 IRLTADKDQPTRLSDLKYVLSQD-VGSTQVILYREKEQART--RLADEYSVAPTRKTLQL 1078 Query: 1146 LRGLIGSEQVELEFD 1160 L+ + G E + L+ D Sbjct: 1079 LKQMFGEENIVLKSD 1093 >UniRef50_Q03F73 DNA polymerase III catalytic subunit, DnaE type n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03F73_PEDPA Length = 1107 Score = 984 bits (2544), Expect = 0.0, Method: Composition-based stats. Identities = 352/1156 (30%), Positives = 590/1156 (51%), Gaps = 58/1156 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FV L+V S YS++ K L+ A G A+ +TD + G V+FY A +KPI Sbjct: 3 FVPLQVLSSYSLLSSPIKIDDLIATAKNRGYQAMTLTDHNTMYGTVEFYQACIKNNLKPI 62 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 VG + D L ++A + GY+NL + S P D + +L Sbjct: 63 VGLTLWLDSTTGIDNQFALVLIAKSVKGYRNLMQISSAKMTSS----TPKFVFDDIKDLL 118 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPD-RYFLELIRTGRPDEESYLHA 184 + LI++ + ++ L RG S E + Y + D +L + Sbjct: 119 DDLIMIVPAQRSEMIELLERGLSGDATELLENYRQVVGDEDLYLGI---NLKQTNIMRQT 175 Query: 185 AVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEE 244 +++AE L + V +++S D A ++ I G + P+ +++ + Sbjct: 176 LMQIAEKHSLGCLPLPSVEYLNSEDHFATQVLKDIASGEVIKHPEILAKDQGNNWLKPRD 235 Query: 245 EMCELFAD--IPEALANTVEIAKRCNVTVRLGEYFLPQFPTG-DMSTEDYLVKRAKEGLE 301 + + D + E L + + + + + LP+FPT + S YL + + LE Sbjct: 236 VFEKEYRDAGLSELLDQLDALTSQIELKIPFVQPKLPKFPTPANQSAIQYLKELCFQQLE 295 Query: 302 ERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPG 361 + + + +Y +RL+ EL VI MGF YFLIV + +Q++ N + GPG Sbjct: 296 K----------SKNAQNLQYQQRLDRELNVIESMGFADYFLIVHDVVQFAHQNHILTGPG 345 Query: 362 RGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADM 421 RGS AGSLVAY L+IT +DP+E+ LLFERFLNPER MPD D+D +KR+ ++++V D Sbjct: 346 RGSAAGSLVAYLLRITSVDPIEYGLLFERFLNPERAQMPDIDLDIPDDKRELMLKYVHDK 405 Query: 422 YGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQL 481 YG V QIITFGT+AAK IRDV RV G +++IS LIP + +TL +A E +L Sbjct: 406 YGHQHVGQIITFGTLAAKQAIRDVARVFGEMPNKINQISALIPSELNITLERALENSSKL 465 Query: 482 PEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQF 541 E E+ + + + AR+LEG+ R+ HA G+V++ +T+ P+ D ++Q+ Sbjct: 466 QEFIRTSEKNRFMFETARRLEGLPRHYSTHAAGIVLSENNLTETTPVQ-DGNEGMLMSQY 524 Query: 542 DKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQ 601 K+ VE GL+K DFLGLR L+++ L+ +++ + P DI I L+D K+ ++ Q Sbjct: 525 SKNYVERVGLLKMDFLGLRNLSLMANILDQVHQLK-----PDFDIENINLNDTKTLELFQ 579 Query: 602 RSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEI 661 R +T+ +FQ ES G+++++++++PD F ++A+ AL+RPGP+++ +D F+ RK RE Sbjct: 580 RGDTSGIFQFESAGIRNVLRKVKPDRFGLVVAVNALYRPGPMEN--IDRFVKRKEHREHY 637 Query: 662 SYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMA 721 S+P ++ L +L T+GI++YQEQVM++A + G +LG AD+LRRAM KKK + + Sbjct: 638 SFP-----NDVLSEILGETFGILVYQEQVMEVASAMGGLSLGQADLLRRAMSKKKHDVIE 692 Query: 722 KQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAE 781 + R+ F +GA + G NA+L +++ +E FA YGFNKSH+ AY+ +++Q +LK ++P Sbjct: 693 QMRTNFIDGALQKGYNAKLTQQVYSYIENFANYGFNKSHAVAYSKLAFQLAYLKTYFPGP 752 Query: 782 FMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGV 841 F A++ + + K + E R+G+K+ PDIN + +I+ G +IKG+ Sbjct: 753 FYTALLNSVIGGEAKTKEYIQELNRLGIKVKAPDINLSQLQYAFYQQ-QIIMGFLSIKGL 811 Query: 842 GEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNS 901 I +IE R G F+ + L R K + ++EKLI SG D G +RA L + Sbjct: 812 RRDFIRNLIEERQSNGEFKSVDSLLRRMRDKGITEEIIEKLIFSGTLDSFGYNRAELGDF 871 Query: 902 LGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYL 961 L + LK + D+F E++ + LD E E LG Y+ Sbjct: 872 LPELLKGIAFSGQN-----VDLF-------EKLMPTIKHRPDMDLDEKLDWEEELLGTYI 919 Query: 962 TGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDD 1021 + HP+ +Y IE+ K + +T + + R + TK+G + + D Sbjct: 920 SAHPVERYANLIEQN----GFKKIDEFSDEAQVTTIVYIRSIRTIRTKKGESMAFANITD 975 Query: 1022 RSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYA 1081 +G E ++F ++ ++L R+L + G+V + GL++ E+ + ++ A Sbjct: 976 PTGESEAVIFPRIY-QHAKILRNKRVLQLRGKVE--KRNDGLQLIVNEI-TAPQTKQVQA 1031 Query: 1082 RGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDR 1141 + + R + +L + G +PV L Y+ + + ++ S Sbjct: 1032 AIWKLEVPSRNNSSEFQTKLFDIFRKYH-GKVPVILVYEDTNEHNE--LSEKFYLNDSSE 1088 Query: 1142 LLNDLRGLIGSEQVEL 1157 + L L+GS+ + L Sbjct: 1089 VKEQLAELLGSQHISL 1104 >UniRef50_A8YV21 DNA polymerase III alpha subunit n=5 Tax=Lactobacillus RepID=A8YV21_LACH4 Length = 1035 Score = 976 bits (2523), Expect = 0.0, Method: Composition-based stats. Identities = 346/1061 (32%), Positives = 547/1061 (51%), Gaps = 50/1061 (4%) Query: 9 LRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA 68 L+ S ++++D K + L++ A G A+ + D GLV FY AGIKP++G Sbjct: 6 LQNLSSFTLLDSPTKVSDLIETAKKRGYQAVGLADVNVTYGLVNFYELAKKAGIKPLLGM 65 Query: 69 DFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKA-YQRGYGAAGPIIDRDWLIELNEG 127 + + + L A N GY NL L S + G ++ L + Sbjct: 66 QLRLNGLVDSTQKYDLIAFAKTNAGYHNLLRLSSAINFLTDNGQNNNVLTLKDLSKYLAD 125 Query: 128 LILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVE 187 L+L+ SL N L + + +E D +L + P ++Y+ Sbjct: 126 LLLIVPANTKSELLSLFETNKQLGSDLIRDLKELTSD-LYLGVYAN--PSMQNYIDYVRS 182 Query: 188 LAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMC 247 L++ L ++AT D +++ D + AI G + D Y+ E++ Sbjct: 183 LSKQFDLLLLATEDSEYLNPHDQFLQKTLRAIATGDKIQDALPLAKQEGSHYLVEAEQLL 242 Query: 248 ELFA--DIPEALANTVEIAKRCNVTVRLGEYFLPQFP-TGDMSTEDYLVKRAKEGLEERL 304 + + D+ +A+ NT ++A++CN V + LP++ +++E+YL A+ GL++R Sbjct: 243 QRYHEFDLDDAVNNTWQVAEKCNAEVVFQKPVLPKYHQKKFVTSEEYLHYLAQTGLQQRF 302 Query: 305 AFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGS 364 K EY +RL EL+VINQMGF YFLIV + I + + GPGRGS Sbjct: 303 GQN--------KIPAEYQKRLNYELRVINQMGFDDYFLIVWDVINYCHRVQITTGPGRGS 354 Query: 365 GAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGR 424 GSLV+Y+L+IT++DP+E++LLFERFLNP R MPD D+D +RD VI+++ YG Sbjct: 355 ACGSLVSYSLRITEVDPIEYNLLFERFLNPSRHEMPDIDLDIPDVQRDTVIKYMYQKYGM 414 Query: 425 DAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG-MTLAKAFEAEPQLPE 483 D +QI+TFGT+AAK +RDVGRV G + + + IP G +TL +A++ +L Sbjct: 415 DHAAQILTFGTLAAKQALRDVGRVFGLTMVEIKKWADAIPYSKGKITLKEAYQQSRELRL 474 Query: 484 IYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDK 543 + +A E K L A LEG+ R+ HA G+VI+ I + L G PVTQ K Sbjct: 475 LVDATPENKLLFKTALGLEGLPRHYSIHAAGLVISDNSIAGISGLQAGPLG-IPVTQQTK 533 Query: 544 SDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRS 603 VE GL+K DFLGLR LT++ L +I ++ K +D IPL+D ++ + Q+ Sbjct: 534 KYVESLGLLKIDFLGLRNLTVLGNILNLIRQQGIK-----IDPNQIPLNDAQTLQLFQQG 588 Query: 604 ETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISY 663 +T AVFQ ES G++ ++++L PD FED++A+ AL+RPGP+Q+ +D F+ RK+G+E + Y Sbjct: 589 KTDAVFQFESGGIRQVLRKLHPDNFEDLVAVNALYRPGPMQN--IDAFVRRKNGQEAVRY 646 Query: 664 PDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQ 723 PD SLK +L+PTYGI++YQEQVMQ AQ+L+G++LG AD+LRRAM KKK + + ++ Sbjct: 647 PD-----PSLKKILQPTYGILVYQEQVMQTAQILAGFSLGEADILRRAMSKKKQDVIEQE 701 Query: 724 RSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFM 783 + F G K G +A +++ +E+FA YGFN+SH+ AY ++Y +LK HYPA F Sbjct: 702 KGKFIAGTIKQGHTKAVAERVYQYIEQFANYGFNRSHAVAYTKIAYWLAYLKVHYPAAFY 761 Query: 784 AAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGE 843 A++ + K + + +KILPPDIN + + + +I+ G+ AIKG+ Sbjct: 762 TAMLNSAAG--AKAQDYIMQAQEANIKILPPDINHSSLEYAL-KNKQILVGLKAIKGLRV 818 Query: 844 GPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLG 903 I + ++ L D R D K L ++ LIM+GAFD L +R L+ + Sbjct: 819 DFAREIAD---NTKPYKSLNDFLRRIDPKFLQADAIKALIMAGAFDGLEKNRNELLVNCD 875 Query: 904 DALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTG 963 + + + I +++ G +P E + LG T Sbjct: 876 EIIANVQLTG--QNISLSEILGNAPLKPADEPTG---------AEKAAMEEKVLGFSTTT 924 Query: 964 HPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRS 1023 P+ K +++ L E G + G ++ + + TK G + + D S Sbjct: 925 SPLIAVQKFAQKF-NSRPLNQFQLNESGVGV---GKLIRFKQIRTKNGKNMAFASFADTS 980 Query: 1024 GRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLK 1064 G EV++F +K+ L+ I ++ +V D F K Sbjct: 981 GEQEVVIFPRIYEKFGTELKVGDIYLLGLRVQGDRFDQNKK 1021 >UniRef50_D1C6C8 DNA polymerase III, alpha subunit n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C6C8_SPHTD Length = 1095 Score = 975 bits (2522), Expect = 0.0, Method: Composition-based stats. Identities = 334/1091 (30%), Positives = 538/1091 (49%), Gaps = 56/1091 (5%) Query: 3 EPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGI 62 E R+V L +H+ YS +DG + ++ +A+ LG ALAITD L G ++F A I Sbjct: 4 EHRYVELHLHTAYSFLDGASLPEEIIARASELGYRALAITDHDGLHGAMEFAQLARAADI 63 Query: 63 KPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLI 122 +PI GA+ + + +HLT+LA + TGY NL LI+ A+ G P +D D L Sbjct: 64 QPITGAELTLA------DGSHLTLLAESVTGYGNLCRLITAAHHAGED-RVPRLDPDLLP 116 Query: 123 ELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRTGRPDEESY 181 EGLILL+G R G + R + G+ A + + Y E F + +EL + + Sbjct: 117 RHAEGLILLTGCRQGALARLVDAGDLAGAEGLLRRYVEWFGAENVVVELQQNLVYGDTRR 176 Query: 182 LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241 + VELAE GL AT +V + ++ VAI + TLD R R + + Y+R Sbjct: 177 VRLLVELAERLGLRYAATGNVHYHRPERHRLQDVLVAIRERTTLDGAHRARRANAEFYLR 236 Query: 242 SEEEMCELFADIPEALANTVEIAKRCN-VTVRLG-EYFLPQFPT-GDMSTEDYLVKRAKE 298 + EE+ LF P AL T+EIA+RC + Y P +PT + +D L + +E Sbjct: 237 AAEEVAVLFDRYPAALEATLEIAERCAGFDLTRDLAYRFPDYPTAPGETPDDLLARICRE 296 Query: 299 GLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDN---- 354 L ER + E I + G+FL+ + + +++ Sbjct: 297 ALAERYPEPERRAAAEARLAEELRL--------IARHRLAGFFLLYRDLLLLAQEVAAEV 348 Query: 355 ----------GVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDV 404 +P G GRGS S+V Y + ++ +DPL L RFLN + S+PD D+ Sbjct: 349 RGTDTPRAGGNLPPGRGRGSSVSSIVCYLIGLSHVDPLAHGLFLGRFLNEDLRSVPDIDL 408 Query: 405 DFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIP 464 DF + R+++IE V ++YG + + + F T ++ +RD+G+ LG P +D+I+KL Sbjct: 409 DFPRDIRERLIERVYEVYGPEHAALVCAFSTYKLRSAVRDIGKALGLPQPDIDKIAKLSE 468 Query: 465 PDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524 L + P+ +A ++ L+++A +L G R+ +H GG++++ + + + Sbjct: 469 ARSAKDLGEELARIPEFAARRDA-PPLRYLVELAEELAGFPRHVTQHVGGMIVSSSPLVE 527 Query: 525 FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584 P+ + Q+DK + A +K DFL L L+++ LE+I ++G+PP+ Sbjct: 528 LVPIQPAAMPGRYLCQWDKDSCDDARFIKIDFLALGMLSLVEECLELI----VRSGKPPV 583 Query: 585 DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644 D++ I D +DM+ +T VFQ+ESR ++ R QP ED+I VA+ RPGP+ Sbjct: 584 DLSRIDFADPAVYDMICAGDTIGVFQIESRAQIQMLPRTQPRSLEDLIVQVAIVRPGPIV 643 Query: 645 SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704 V+ ++ + R +++ H SL+PVLE T G+ILYQEQV+++A VL+G+T G Sbjct: 644 GKAVNPYVQNRQRRMRNPRAPIRYDHPSLEPVLEETLGVILYQEQVLEVAMVLAGFTAGQ 703 Query: 705 ADMLRRAMGKKK-PEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAA 763 A+ LRRAM +K+ E M F +GA G+ E+A ++F + FA YGF KSHSAA Sbjct: 704 AEALRRAMSRKRSREAMLHFWRQFRDGALARGVRLEVAKEVFRKLLGFAEYGFPKSHSAA 763 Query: 764 YALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHF 823 +A+++YQ+ WL+ +YP EF A+ +V++ R G++ILPPD+N Sbjct: 764 FAVLAYQSAWLRCYYPTEFTCALFNNQPMGFYPPHVIVNDAKRHGVRILPPDVNQSGARC 823 Query: 824 HVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLI 883 V + + G G ++G+GE I R G +R L D R L R +E LI Sbjct: 824 TVEGN-AVRIGFGYVQGIGEDAALLIEREREANGPYRSLADFVRRVP---LAREAVENLI 879 Query: 884 MSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQP 943 + GAFD G R + LG + A A Q + +EQ +P Sbjct: 880 VVGAFDGFGLGRREALWQLGLFIPARGFGKNGAAGKQLPL-------ALPVEQDMVELRP 932 Query: 944 WPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAA 1003 + + +TLGL HP+ + + V D+ G + AGLVV Sbjct: 933 MSAWEQMAADYDTLGLSPRYHPLGLLRPHLPEAI--VSTVDLAEIPDGTEVRVAGLVVCR 990 Query: 1004 RVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGL 1063 + T +G I L+D G + V+++ ++ + L+ + L+V G++ D G + Sbjct: 991 QRPGTAKG--ITFLLLEDERGLVNVIIYPALYEEQRLLVRGEPFLVVEGRLQRRD--GTI 1046 Query: 1064 KMTAREVMDID 1074 + A + +D Sbjct: 1047 NLVAHRLHTLD 1057 >UniRef50_B9L411 Error-prone DNA polymerase n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L411_THERP Length = 1059 Score = 974 bits (2517), Expect = 0.0, Method: Composition-based stats. Identities = 353/1109 (31%), Positives = 545/1109 (49%), Gaps = 81/1109 (7%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M P + L HS +S++D LV++AAALG LA+TD L G+V+F A Sbjct: 1 MGAP-YAELHAHSCFSLLDAPCHPEQLVQQAAALGYEHLALTDHDALHGVVRFVRAAERV 59 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGP------ 114 GI PIVGA+ + ++ +HL +LA + GY L L+S A GP Sbjct: 60 GIHPIVGAEITM------EDGSHLALLAEDERGYATLARLLSAARLGWPTPEGPGSEDTA 113 Query: 115 ----------IIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-P 163 + WL++ ++GLI+L+G R G + R+L GN A + F P Sbjct: 114 LAGSPARRAVALPWHWLVDHHDGLIVLTGCRQGPLARALTEGNRADALARAHWLARVFGP 173 Query: 164 DRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGF 223 +R F+EL G + LA GLP+VAT +V ++D++ + ++ V I +G Sbjct: 174 ERCFVELQDHGERGDRERCTELAALARTAGLPLVATGNVHYLDAAGWRLQDVLVCIREGI 233 Query: 224 TLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFP- 282 T++ P R S + + M F P+A+ANT IA+RC V++ + P P Sbjct: 234 TIETPHPARKTSAAYRLVAPASMAHRFRSFPDAVANTRRIAERCQVSLDFRQVRFPPLPH 293 Query: 283 --TGDMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGY 340 + L ++A EG + R L +LE EL VI ++G + Sbjct: 294 LVPPGETPMQVLRRQAYEGAQRRYGQL----------SEPVVRQLEHELGVIERLGVAEF 343 Query: 341 FLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMP 400 FLI + + G GRGS A SLVAY L IT +DPL LLFERFLN ER SMP Sbjct: 344 FLICADLANRFR------GRGRGSAADSLVAYCLGITQVDPLAHRLLFERFLNEERPSMP 397 Query: 401 DFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIS 460 D D+DF +E R++ I +V YG + + + + T A++ IRD+GRVLG P +D ++ Sbjct: 398 DIDIDFGLEDRERAIAYVYATYGVEHAAMVCNYVTFQARSAIRDLGRVLGLPPEIIDELA 457 Query: 461 KLIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPT 520 K A P+L + + L+ + +LE + R+ H GG+VIA Sbjct: 458 KSQGRLGEALPVLARALAPRLS--PDLRRRLAWLVRLVPQLEDIPRHLSVHVGGMVIAGR 515 Query: 521 KITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNG 580 + +F + V +DK D+E AGL+K D L +R +++++ A+E+I + Sbjct: 516 PVVEFTTVEPSRMPGRVVLGWDKRDIEEAGLIKTDVLCVRAISVVHQAIELIEQASGLR- 574 Query: 581 EPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRP 640 +D+ +PLDD + +LQ ++T +Q+ESR + + R P+ FED+IA VA+ RP Sbjct: 575 ---IDLEQLPLDDPAVYRLLQTADTIGTYQVESRAQQQSLPRTHPERFEDLIAQVAIIRP 631 Query: 641 GPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGY 700 GP+Q GMV +I R+ G E + Y H L+P+L T G+ILYQEQV+++A ++G Sbjct: 632 GPIQGGMVHPYIRRRRGLEPVRY-----LHPKLEPILRETLGVILYQEQVLEVAMAIAGM 686 Query: 701 TLGGADMLRRAMGKKK-PEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKS 759 T G AD RRAMG K+ M R F GAE+NG+ +A +IF+ + FA YGF KS Sbjct: 687 TAGQADAFRRAMGSKRSRAAMEALRGDFLAGAERNGVARPVAERIFEQIAAFAEYGFCKS 746 Query: 760 HSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSG 819 H+AA A +Y+TLWL+AHYPA + A++ L+ + R G+ +LPPD+ + Sbjct: 747 HAAALARTAYETLWLRAHYPAALLCALLNNQPMGFYAPEVLIWDALRRGIHVLPPDVLAS 806 Query: 820 LYHFHVNDD---GEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNR 876 + D G + G+ A++GVG E I+ AR++ FR+ D+ R +L Sbjct: 807 AARSTLTGDPVHGPVRLGLTAVRGVGRAAAERIVAARSE-EPFRDTADVVRRA---QLTP 862 Query: 877 RVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQ 936 +E L++ GAFDRL P R+ L D L A + + + V E + +EQ Sbjct: 863 EQVEALVLVGAFDRLAPDRSR-RELLWDLLAVATERPERPRLLDVSEPAVRLPELDTVEQ 921 Query: 937 SYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITA 996 ++ LG L H + Y + R + + G Sbjct: 922 TFLD-------------YAILGFCLDRHLMELYRAQ-RRILRVTPAARLRTLPPGATARV 967 Query: 997 AGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSF 1056 AGLVV + T RG + TL+D +G + V++ ++++ LL + +L++ G+V Sbjct: 968 AGLVVCRQAPPTARG--VLFLTLEDETGLVNVIVPPPVREQHRALLRRQPVLVIDGRVER 1025 Query: 1057 DDFSGGLKMTAREVMDIDEAREKYARGLA 1085 + + A EV + + Sbjct: 1026 E--GALASLVAEEVRPLGRPLSAQPTRVR 1052 >UniRef50_C0GKP9 DNA polymerase III, alpha subunit n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GKP9_9FIRM Length = 1022 Score = 971 bits (2510), Expect = 0.0, Method: Composition-based stats. Identities = 355/1072 (33%), Positives = 533/1072 (49%), Gaps = 56/1072 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHLRV S+YS + G + LV +A LGMPA+A+ D+ L G V+F GIKPI Sbjct: 3 FVHLRVKSEYSFLRGACRLEDLVARARELGMPAIALVDYGVLHGAVRFTNLARQYGIKPI 62 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 +GA+F++ C L L +L + TG+QNL L+++ +D W+ E Sbjct: 63 LGAEFSLPCGL------PLVLLVRDRTGWQNLVRLVNRVQLA--RPRSDTLDMGWIAEDA 114 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 185 GL + G+ RS + + + F +L L G P + Sbjct: 115 AGLTAVLPAGGGETVRS-----RQSYIQALEQLQPVFGCEVYLGLEDGGLPGTKRQNELV 169 Query: 186 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 245 ++AE + +P+VAT++V ++ D + + + I G L R Y+ + E Sbjct: 170 AKVAEGKNVPLVATHNVHYVLPGDDEVYRMVNCIRTGRPLAGAGRSFLPGAAYYLPAPAE 229 Query: 246 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGD--MSTEDYLVKRAKEGLEER 303 M FA A NT+++AKRC + LP F D E L + EG++ R Sbjct: 230 MHRRFAAFSGACENTLDLAKRCTFILEQEGMQLPAFLQQDCKEPAEAVLRRLCLEGMQRR 289 Query: 304 LAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRG 363 E RLE EL VI G YFLIV + + +++ + VGPGRG Sbjct: 290 -----------GLENAEAYRRLERELAVIIPKGLSAYFLIVHDLVSYARKQNISVGPGRG 338 Query: 364 SGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYG 423 S GSLVAY L I +DPL L FERFL+ +R PD D+D C +R++++ ++ D YG Sbjct: 339 SAGGSLVAYLLGIIQVDPLAHGLYFERFLSEDRSGFPDIDLDVCQRRREELLGYLRDRYG 398 Query: 424 RDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGM-TLAKAFEAEPQLP 482 + V+Q+ F T+ A+A +R+VG+VL + +++ +P G + A P+ Sbjct: 399 QGYVAQVSAFSTLGARAAVREVGKVLDMTGEKISTVAEALPYYAGRGGIEAAVGQYPEFM 458 Query: 483 EIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFD 542 DE+ ++ AR+LEG+ R+ HA GV+I + + PL G+ +TQ+D Sbjct: 459 SAKLRDEDSGTVLAGARRLEGLCRHLSTHASGVIIGDGNLQEALPLCRGPAGE-VLTQWD 517 Query: 543 KSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQR 602 K DVE G +K D LG R LTI + AL + KR IPLDD+ ++ ML+R Sbjct: 518 KDDVEEMGFLKIDVLGSRNLTIAHDALSWVRKRHGTTLVA----EEIPLDDEDTYAMLRR 573 Query: 603 SETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEIS 662 E+ FQLES GM+ +++RL P ED+I L++L+RPGP +SG+V++FI R+HGRE Sbjct: 574 GESLGCFQLESVGMRRVLRRLAPQRLEDLIHLLSLYRPGPWESGLVESFIARRHGRE--- 630 Query: 663 YPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAK 722 D+ H L +L TYG++LYQEQVMQ+A L GYT G AD LRR M ++ P Sbjct: 631 --DMSGVHPLLTGILAETYGVVLYQEQVMQVACELGGYTPGEADGLRREMSRRLPSLQEF 688 Query: 723 QRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEF 782 + F GA K G++ A +F + +FAGY FNK+HSAAYALVSY T +LK HYP EF Sbjct: 689 HQPKFVAGAVKRGLSRAEAEDVFTHLCRFAGYSFNKAHSAAYALVSYWTAYLKKHYPVEF 748 Query: 783 MAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVG 842 AA++++ V E G+ +LPP +N F V + I + ++ +G Sbjct: 749 YAALLSS-GSGYYATAVYVREAAIRGVPVLPPHVNHSGLSF-VPEKEAIRSALPVVRDLG 806 Query: 843 EGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSL 902 EA + K G F L D C R L R L LI +GAF LG +R + SL Sbjct: 807 ARAAEA-LLEAQKKGPFMSLHDFCCRVGRSALRRSALVNLIKAGAFAGLGRNRRQALASL 865 Query: 903 GDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLT 962 LK D+ GQ + ++ E E + + + V+ E ETLG+ L+ Sbjct: 866 DHVLKWTDRQP-----GQLSLLDLMPE-----ESAVPALPDFSWPEVVAAELETLGMALS 915 Query: 963 GHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDR 1022 HP+ Y K+++ V L ++ G +T AG V+ K+G + + D Sbjct: 916 DHPLACYKKQLQS-VSREPLCNLCNLPVGTKVTVAGTVMGRTRRRLKQGGVMLTLFISDE 974 Query: 1023 SGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDID 1074 SG E + + + L +++G+ + D G + +++ + Sbjct: 975 SGFAEAVFYPADYRRLLYRL-DAAAFVITGKTTAD----GDAVMVQDIRPLS 1021 >UniRef50_C3RN28 DNA polymerase III dnaE (Fragment) n=3 Tax=Bacteria RepID=C3RN28_9MOLU Length = 977 Score = 970 bits (2508), Expect = 0.0, Method: Composition-based stats. Identities = 355/1027 (34%), Positives = 566/1027 (55%), Gaps = 56/1027 (5%) Query: 8 HLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVG 67 HL+V+S YS + LVKKA+ L ALA+TD N+ G ++ GIK + G Sbjct: 4 HLQVYSSYSFQNSTILIEDLVKKASDLHYEALALTDKDNMYGAMELAKYAKKYGIKAVFG 63 Query: 68 ADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEG 127 + +V+ + E+ L +LA + TGY +L + S+ GA I + L E Sbjct: 64 LEASVE---INHEIYPLLLLARDVTGYFDLVKITSEICLSERGA----ISLEALSLYREH 116 Query: 128 LILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVE 187 L ++S + G + R +L+ + + + ++ F + +++ L G ++ V Sbjct: 117 LFVISACKEGIIERLILKELDSEALKYLELFKNTF-NNFYVGLQNHGIAMQQKLNERLVA 175 Query: 188 LAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMC 247 LA + +P+ TN+VR+++ + ++ A G LD + + Q Y++S EM Sbjct: 176 LATLQNIPICVTNEVRYLNKDEAFTLDLLQASAKGMMLDLEHQV--QTDQLYLKSSFEME 233 Query: 248 ELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTG-DMSTEDYLVKRAKEGLEERLAF 306 LF + + NT +I + CNVT+ + LP++P D DYL + GL++R Sbjct: 234 SLFD--KKYIENTNDIIRLCNVTIPTDQMHLPKYPVPKDGDAGDYLRQLCLVGLKKRFKG 291 Query: 307 LFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGA 366 EY ERL+ EL VIN+MGF YFLIV ++++++K + + VGPGRGS A Sbjct: 292 K--------NIPNEYIERLKKELTVINKMGFNDYFLIVFDYVRYAKMHKILVGPGRGSAA 343 Query: 367 GSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDA 426 GSLVAY L IT +DPL +DLLFERFLN ER+SMPD D+DF ++RD+V+ +V + YG + Sbjct: 344 GSLVAYVLGITGVDPLRYDLLFERFLNEERISMPDIDIDFQDDRRDEVVNYVTEKYGHEH 403 Query: 427 VSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAEPQLPEI 484 V+QI+TF T K I+D+G+VLG P ++ ++K IP + + + FE + Sbjct: 404 VAQIVTFSTYGPKVAIKDLGKVLGVPLPRLELLTKNIPTNYKNRKSAREVFETSYSFQSM 463 Query: 485 YEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKS 544 D ++ ++ +E + RN HA GVV++ + PL VTQ+ K Sbjct: 464 VNKDPALRKIMPAVFIVEKLPRNISTHAAGVVLSNDVLDQVVPLVRGPNNG-VVTQYSKD 522 Query: 545 DVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSE 604 +E GL+K DFLGL+ LTII++ ++ I AKN + ++I I L DKK+++M+ R + Sbjct: 523 YIEEVGLLKMDFLGLKNLTIIDYIIKDI----AKNHQVEININDIDLQDKKTYEMISRGD 578 Query: 605 TTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYP 664 T +FQLES GMK+L+ ++Q DC +D+IA +ALFRPGP+ + + ++I RK G+E I+YP Sbjct: 579 TFGIFQLESSGMKNLLVKMQCDCLDDVIAAIALFRPGPMAN--IPSYIARKKGKEPITYP 636 Query: 665 DVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQR 724 E LKP+L+ TYGI+LYQEQ+MQ AQ+++G++L AD+LR+AM KK M + Sbjct: 637 L-----ECLKPILKSTYGILLYQEQIMQAAQLVAGFSLAKADILRKAMSKKTASLMKAMK 691 Query: 725 SVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMA 784 S F +G NG + A+K+F+L+E+FA YGFNKSHS Y ++Y +LKA++P EF + Sbjct: 692 SEFIQGGIANGFSELEAVKVFELIERFANYGFNKSHSVVYGYIAYWLAYLKANFPLEFFS 751 Query: 785 AVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEG 844 A+++ + + + + E + G+K+L P IN F V +DG I Y + AIK VG Sbjct: 752 ALLSNEQSSDASKLSCIQEGKKYGVKLLAPSINYSTDRFKV-EDGNIRYSLLAIKNVGYA 810 Query: 845 PIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGD 904 +AI R G F+++FD +R ++ KLN ++L+ LIM+GAFD +R + +L Sbjct: 811 GYKAIEAERQ-NGTFKDIFDFVSRMESSKLNSKMLDSLIMAGAFDEFKLNRTTIKQNLHK 869 Query: 905 ALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGH 964 ++ A+ L E + VL+ E+ LG+YLT H Sbjct: 870 IMEYAE----------------LKNSIGIDEPPILTIVRDNRIKVLEEEKMVLGVYLTMH 913 Query: 965 PINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSG 1024 PI ++ + V L ++ + + + +V+V K+G + D +G Sbjct: 914 PIALIKNNLKEQI--VNLNELSN-YIDQPVRVIMALSRVKVIVDKKGQEMCFVDGYDETG 970 Query: 1025 RLEVMLF 1031 ++ ++F Sbjct: 971 EVDAVVF 977 >UniRef50_C8WVC5 DNA polymerase III, alpha subunit n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WVC5_ALIAD Length = 1039 Score = 967 bits (2501), Expect = 0.0, Method: Composition-based stats. Identities = 350/1077 (32%), Positives = 539/1077 (50%), Gaps = 49/1077 (4%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL HS YS +DG + LV +AAA GMPALA+TD + G +F+ G+KPI Sbjct: 2 FVHLHCHSPYSFLDGASSIEALVAQAAAQGMPALALTDRNTIAGQPEFHRLAAAYGVKPI 61 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 GA+ + ++ + L VLA + TG+++L L+++ + A P + L E + Sbjct: 62 AGAELTM------EDGSQLVVLAEHATGFRHLCELLTRMHVDARDRADPRLREADLFERS 115 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 185 EGL++LSGG G V R+L R V Y F DR++LE G P + Sbjct: 116 EGLLILSGGLRGFVQRALARRAYGDARRFVERYRNVFGDRFYLEWTADGLPGCARRMRDL 175 Query: 186 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 245 ++LAEA G+P VA +VR + H++ I G L P R ++ Y+ E E Sbjct: 176 LDLAEATGVPAVAATEVRAASPEEVAVHDVLTCIRVGCDLQTPHPERPFNRLGYLHDEAE 235 Query: 246 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTE-DYLVKRAKEGLEERL 304 FA P A+A TVEIA+RC+ P++ + L + +G +R Sbjct: 236 AMRRFAQDPRAMARTVEIAERCSPVFPAEGPLFPEYRDASGRGGVELLEQLVWQGARKRY 295 Query: 305 AFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGS 364 + P E RLE E +I +G+ YFL+V + +++++ G+ GRGS Sbjct: 296 GKVSP----------ELQMRLEHEFAIIRDLGYADYFLVVWDIVRYARSRGIRCA-GRGS 344 Query: 365 GAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGR 424 A S+VAY L +TD+D L +LLFERFL+ ER PD D+DF ++RD+VI++V YGR Sbjct: 345 AADSVVAYCLYLTDVDALNRNLLFERFLSRERAERPDIDIDFASDRRDEVIDYVYRRYGR 404 Query: 425 DAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMT-LAKAFEAEPQLPE 483 D V+++ T+ T A++ +R+VGRV G P +D+++K IP + +A E P+L + Sbjct: 405 DRVARVATYQTFRARSAVREVGRVFGIPEELLDQLAKRIPWSTHADEIEEALERVPELRD 464 Query: 484 IYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDK 543 + ++ ++R++ G R G H GG+VI+ + L G +T +DK Sbjct: 465 FQPYRRAFQWMLAVSRQIAGFPRYFGTHTGGIVISGEPLMKVTSLQPSASG-WLITPYDK 523 Query: 544 SDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRS 603 +E GLVK D L LRT+ + AL + R +D IP+DD+ +F ++R Sbjct: 524 RLLEDVGLVKLDLLSLRTMAAVEGALRLGTAR-------AVDYDHIPMDDEATFASIRRG 576 Query: 604 ETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISY 663 +T VFQLES + L RL + ED++A VAL RPGP+Q MVD F+ R+ G E +SY Sbjct: 577 DTIGVFQLESPAQRALQVRLGAESLEDLVASVALIRPGPIQGNMVDPFLARRRGLEPVSY 636 Query: 664 PDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK-KKPEEMAK 722 H L+P+L TYG++L+QEQV++IA ++G+T G AD LRR M + EM + Sbjct: 637 -----LHPKLEPILGKTYGVVLFQEQVIEIATAIAGFTPGEADELRRVMSHARSRAEMEQ 691 Query: 723 QRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEF 782 F + A + G+ E A +F V +A YGF ++H+AA+A +Y+T +L H+PA F Sbjct: 692 IGERFVQKAVRQGVPLETAKTLFSYVRGYASYGFCEAHAAAFATTAYKTAYLIEHHPASF 751 Query: 783 MAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVG 842 AAV+ + E R G++ILP DIN + V + I G I+ Sbjct: 752 FAAVLNQLPMGYYPAHVICAEARRRGVRILPVDINESEWDAGVPEPDAIRLGFRLIRSFS 811 Query: 843 EGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPH-RAALMNS 901 E A++E R G FR L D R + + E+LI +GAFDR+ R L+ Sbjct: 812 ERVARALVEERQAFGSFRSLADAVMRLP--QADALHFERLIRAGAFDRVESRDRRELLWQ 869 Query: 902 LGDALKAADQHAKAEAIGQADMFGVL-AEEPEQIEQSYA-SCQPWPEQVVLDGERETLGL 959 L L + A A +F + A P + S P + E LG+ Sbjct: 870 LPRWLALRKEKALA-------LFDTISAPSPAEDAIRLPQSMPPMSLAERIADEYSVLGV 922 Query: 960 YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTL 1019 ++GH ++ Y + + R G L + G + AGL + TK G + TL Sbjct: 923 GVSGHWLSLYREAL-RNEGYCTLAEAGEKREGARVKVAGLSIRPHRPPTKSGKTVVFFTL 981 Query: 1020 DDRSGRLEVMLFTDALDKYQQLLEK--DRILIVSGQVSFDDFSGGLKMTAREVMDID 1074 +D +G + ++F + +L R++ +SG + G ++ + + Sbjct: 982 EDETGIADAVMFETVYRREGAVLFTPFGRLIGLSGVIERRGGLKG-QIRVEHIWTLA 1037 >UniRef50_C6X5Z0 DNA polymerase III alpha subunit n=1 Tax=Flavobacteriaceae bacterium 3519-10 RepID=C6X5Z0_FLAB3 Length = 1567 Score = 964 bits (2493), Expect = 0.0, Method: Composition-based stats. Identities = 357/1077 (33%), Positives = 560/1077 (51%), Gaps = 103/1077 (9%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKF----------- 53 + + HS YS + L+ KA + A+ I D N+ G KF Sbjct: 262 DYFNFHNHSIYSSLQSSTHINELISKAMDNDLKAVGIVDLGNMMGAFKFVSEVEKTNAQI 321 Query: 54 ----------------------YGAGHGAGIKPIVGADFNVQCD--------LLGDELTH 83 + P++G +F + D T+ Sbjct: 322 KKTYQTYLENKEKADREGTAFTEKEPRKEPLIPVIGCEFYISDRPEQKQFTKDDPDRRTN 381 Query: 84 LTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSL 143 + +LA N +GY+NL L S Y G+ P I R + E + LI L+ G +GDV ++ Sbjct: 382 VVLLAKNFSGYKNLVKLSSLGYVNGFYFGVPRISRKMIAEFKDNLIALTAGTLGDVPSTV 441 Query: 144 LRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVR 203 L +E +++ F + +++++ +EE + A+ + ++A N+ Sbjct: 442 LEFGEQKGEEVFKWWKNTFGEDFYVQIQNHEVEEEEHLNEVLLGFADQYDVKILAQNETF 501 Query: 204 FIDSSDFDAHEIRVAIHDGFTLDDP------KRPRNYSPQQYMRSEEEMCELFADIPEAL 257 + + SD + +I I DG L P KR S Q Y+++ +E+ + F P+A Sbjct: 502 YTNKSDANIQDILYCIKDGEKLSSPVGKGFGKRRGLPSKQFYIKNTDELKQSFIQFPDAF 561 Query: 258 ANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTED-------------YLVKRAKEGLEERL 304 E+ + + LP+F + D YL G E+R Sbjct: 562 EAYTELLGKFEPYTLKRDVLLPEFDIPEEFLHDEDKTDGGKRGENAYLRHLTYAGAEKRY 621 Query: 305 AFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGS 364 + E +RL+ EL+VI + G+PGYFLIV +F ++ GV VGPGRGS Sbjct: 622 PEI----------TDEIRKRLDFELEVIAKTGYPGYFLIVQDFCNEARKMGVWVGPGRGS 671 Query: 365 GAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGR 424 AGS VAY IT++DP+E++LLFERFLNPER+SMPD D+DF E RD++I+ V + YG+ Sbjct: 672 AAGSAVAYCTGITNVDPIEYNLLFERFLNPERISMPDIDIDFDDEGRDKIIKWVVEKYGK 731 Query: 425 DAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPE- 483 + V+QIIT+ + K+ I+D GRVL + I+KLIP PGM +AKAF +LP Sbjct: 732 NNVAQIITYSVLGGKSAIKDAGRVLDLSIPETNNIAKLIPSAPGMNIAKAFSKFEKLPPE 791 Query: 484 -----------IYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDE 532 + +E ++ A+++EG RN G HA GV+I P I++ P+ Sbjct: 792 DKVLAQEMKDILANPTDERYDVLYAAQRMEGCIRNTGIHACGVIITPEDISNLIPITIAA 851 Query: 533 EG-KHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPL 591 + V+QFD S E AGL+K DFLGLRTLTII A+++I +R +DI +PL Sbjct: 852 KDPDILVSQFDNSVAESAGLLKMDFLGLRTLTIIKHAIKLIKERHG----TEIDIDHVPL 907 Query: 592 DDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNF 651 DD K++ + Q T +FQ ES GM+ ++ L+P F D+IA+ AL+RPGP++ + NF Sbjct: 908 DDAKTYQLFQEGRTIGIFQYESPGMQKYMRELKPTKFADLIAMNALYRPGPIK--YIPNF 965 Query: 652 IDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRA 711 I+RK+ EE Y E K LE TYGI +YQEQVM ++Q L+ +T G AD LR+A Sbjct: 966 INRKNEIEETVY-----DLEETKEFLEETYGITVYQEQVMLLSQKLANFTKGEADTLRKA 1020 Query: 712 MGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQT 771 MGKK + K F E +KN +N + KI+ E FA Y FNKSHS YAL++Y T Sbjct: 1021 MGKKDRATLDKMYPKFLEEGQKNNLNVDKLNKIWKDWEAFAEYAFNKSHSTCYALIAYHT 1080 Query: 772 LWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEI 831 +LKA+YPAE+MA+VMT +++NT+++ +++C +G+ +L P +N Y F VN+ G+I Sbjct: 1081 AYLKANYPAEYMASVMTNNLNNTKQITMFMEDCKSIGVDVLGPAVNESQYEFSVNEKGQI 1140 Query: 832 VYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRL 891 +G+GAIKG+G GP EAI++ R K ++ ++D + + ++N+RV E L+++GAFD + Sbjct: 1141 RFGLGAIKGIGSGPSEAIVDGR-KNEKYKNIYDFFEKIPSSQMNKRVAESLVVAGAFDEV 1199 Query: 892 G-PHRAALMN-------SLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQP 943 HRA + ++ L+ ++ + +F AEE + + Sbjct: 1200 DRYHRAQYFDIDITGKTTIERLLRYGQSFQDSKNEIENSLFADFAEEVKIEQPKINPAPE 1259 Query: 944 WPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLV 1000 W +L+ E+E +G YL+ HP+++Y + + G + K++ ++ + + +V Sbjct: 1260 WQNMHMLNKEKEIIGFYLSAHPLDEYRFQYQFLQGALSKKEILEGKKDEPVEIEKIV 1316 Score = 73.4 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 64/157 (40%), Gaps = 4/157 (2%) Query: 995 TAAGLVVAARVMVTKR-GNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQ 1053 AGLV V K G +I TL+D SG L + ++ +E R +I + Sbjct: 1405 MVAGLVTEYTVKDGKNSGEKIAFVTLEDYSGSYGFRLGDRDYMRLREKIEVQRFVIFKIK 1464 Query: 1054 VSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTI 1113 + + EV+D+ +A EK+A+ + + + + + + +++L + SG Sbjct: 1465 F-AQSRDNRVFVNVAEVIDLKDAFEKFAKKMTVVVDVNDLRKEDIVFFKENLLGN-SGEQ 1522 Query: 1114 PVHLYYQRADARARLR-FGATWRVSPSDRLLNDLRGL 1149 ++ + D + +V + LL + + Sbjct: 1523 KLNFLVKNPDDHTVIEMMSVKTQVEINGDLLEVINNM 1559 >UniRef50_Q043V3 DNA polymerase III catalytic subunit, DnaE type n=15 Tax=Lactobacillus RepID=Q043V3_LACGA Length = 1038 Score = 962 bits (2487), Expect = 0.0, Method: Composition-based stats. Identities = 339/1059 (32%), Positives = 559/1059 (52%), Gaps = 47/1059 (4%) Query: 7 VHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIV 66 V L+ S +++++ K L + A G ALA+TD GLV FY A GIKP++ Sbjct: 4 VSLQNLSSFTLLESPTKVKDLAENAKKKGYSALALTDVNITYGLVNFYKAAKETGIKPLL 63 Query: 67 GADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGP-IIDRDWLIELN 125 G + + L V+A ++ GY+N+ L S +++ + L + Sbjct: 64 GMQLRINGLIDQANKYDLIVIAKDDQGYKNILRLSSAVNLLTENGEKENVLELEELKKYL 123 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 185 L++++ + + L N + V ++ P + L ++ Y++ Sbjct: 124 GHLVIITPSNLHSELKMLQTNNPNMGANYVRILKDAVPTSSLVYLGVYADQGQQEYINYL 183 Query: 186 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 245 LA L + A D ++++ ++ AI L++ ++ + Y+++ EE Sbjct: 184 RSLATQFELSLAAVEDGQYLNRNEQFLRRTLQAIKSNTHLENVEQLAKQAGSHYLKTSEE 243 Query: 246 MCELFA--DIPEALANTVEIAKRCNVTVRLGEYFLPQFP-TGDMSTEDYLVKRAKEGLEE 302 + + +I +AL N +I + CN + + LP+F ++++YL A+ GL + Sbjct: 244 LQVNYRKFEIEDALENAEKIGQLCNAKITFQDPQLPKFKQNKFPTSKEYLHSLAQNGLAK 303 Query: 303 RLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGR 362 R P+ Y +RL+ EL+VIN+MGF YFLIV + + ++ + GPGR Sbjct: 304 RFKGQIPER---------YQKRLDYELKVINEMGFDDYFLIVWDVMNFAHSVHITTGPGR 354 Query: 363 GSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMY 422 GS AGSLV+YAL+IT++DPLE++LLFERFLNP R MPD D+D +RD+VI+++ + Y Sbjct: 355 GSAAGSLVSYALRITEVDPLEYNLLFERFLNPARQQMPDIDLDIPDNRRDEVIKYMFEKY 414 Query: 423 GRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG-MTLAKAFEAEPQL 481 G + +QI+TFGT+AAK V++DV RV G R IP G +TLA+A++ +L Sbjct: 415 GMNHAAQILTFGTLAAKQVLKDVCRVFGLNKVETYRWLDAIPHAKGKITLAEAYQKSKEL 474 Query: 482 PEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQF 541 + + K L A LE + R+ HA G+VI + + L G PVTQ Sbjct: 475 QLLVNTNTFSKILFATAEHLENLPRHYSIHAAGLVITDDSLAEIVGLQAGPLG-IPVTQQ 533 Query: 542 DKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQ 601 K +VE GL+K DFLGLR LTI+ + + K+ +D IPL+D+++ + Q Sbjct: 534 TKLNVESLGLLKIDFLGLRNLTILGNIIAAL-----KSEGVEIDPNQIPLNDQETLALFQ 588 Query: 602 RSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEI 661 R +T AVFQ ES G+K ++++L PD FED++A+ AL+RPGP+ + +FI+RKHG+E + Sbjct: 589 RGDTDAVFQFESDGIKRVLEQLHPDSFEDIVAVNALYRPGPM--NNIGHFINRKHGKERV 646 Query: 662 SYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMA 721 YPD SLK +L PTYG+++YQEQVMQ AQVL+G++LG AD+LRRAM KK + + Sbjct: 647 QYPD-----PSLKKILGPTYGVLVYQEQVMQTAQVLAGFSLGEADLLRRAMSKKNADVIQ 701 Query: 722 KQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAE 781 K+R F +GA K G E+A +++D + +FA YGFN+SH+ AY+ +++ + K HYP Sbjct: 702 KEREKFIQGAVKLGRRKEVAEQVYDYIAQFANYGFNRSHAVAYSKIAFWLAYFKVHYPGA 761 Query: 782 FMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGV 841 F +++ +++ N K+ + + G+K LPPDI + F + ++G+I+ G+ AI+G+ Sbjct: 762 FYLSLLNSNIGNRNKIAQYLMQAQEAGIKTLPPDIENSQADFSL-ENGKILVGLKAIRGL 820 Query: 842 GEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNS 901 ++ I+E + + + D + D L+ + LI +GAFDRL P+R L+ Sbjct: 821 RSDLLKQILEIKR---PIKSMTDFLWKIDNNLLSADAIANLIKAGAFDRLAPNRNELLKI 877 Query: 902 LGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYL 961 D +++ A +F L + E+ + A+ E E +G Sbjct: 878 NKDLVESVK-----MAGSNLSLFETLEPKIEEEKMPTAA-------EKSAMEVEAMGFST 925 Query: 962 TGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDD 1021 +PI K +Y RL+ E+G + G ++ + + TK+G+ + D Sbjct: 926 GINPIIAVQKYARKY-NAKRLQAFESNEQGIAV---GKLMRIKQITTKKGDNMAFAVFSD 981 Query: 1022 RSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFS 1060 SG + +F K ++ L+ I ++ + D FS Sbjct: 982 SSGDKDFTIFPQVWKKVEENLKIGDIYLLQVKTQSDRFS 1020 >UniRef50_C8NF53 DNA polymerase III, alpha subunit n=1 Tax=Granulicatella adiacens ATCC 49175 RepID=C8NF53_9LACT Length = 1117 Score = 962 bits (2487), Expect = 0.0, Method: Composition-based stats. Identities = 359/1167 (30%), Positives = 603/1167 (51%), Gaps = 67/1167 (5%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 + L+V S YS++ + V LG LA+TD L G V+FY GI+P Sbjct: 2 PYTTLQVFSSYSLLKSTIRLNEYVATGKLLGYKQLALTDDGVLHGAVEFYERCIQNGIQP 61 Query: 65 IVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL 124 I+G F + + L V A + GY++L L + YQ+G + +W+ Sbjct: 62 ILGCTFEIAWKSDASKKEMLVVYAKGSKGYESLLKLSTL-YQQGLTWTKEMT--EWIATH 118 Query: 125 NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHA 184 +E + ++ + + +G V + V EE+ + + R E S Sbjct: 119 SEDVKIVLPPTDSEWVAANSKGRLEAVLKAVK--EEYAGVEIAIGITREMV--ERSEFEK 174 Query: 185 AVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEE 244 E EA G+ VA + R+++++D+ ++ AI G TL + + + + + Sbjct: 175 MREGIEAAGVLPVAFSVSRYLNATDYFPWKVLQAIRLGGTLSFTQE--DATGSESLPEAT 232 Query: 245 EMCELFADIPE--ALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKRAKEGLE 301 M ++F + L+N + K V + L + LP+FP D ++ +L + + + Sbjct: 233 SMAKVFQVVEGGVLLSNLEKFTKDLVVEIPLRDTMLPKFPVPDGKTSAQFLYELCEAAML 292 Query: 302 ERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPG 361 E P Y RL+ EL VI++MGF YFLIV + ++ +++ G+ G G Sbjct: 293 EM-----------GVTTPIYVNRLKEELAVIHEMGFDDYFLIVWDIMRHAREKGIQTGAG 341 Query: 362 RGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADM 421 RGS AGSLVAY L IT +DP+ + LLFERFLN ER +MPD D+DF +KR+ ++ ++ Sbjct: 342 RGSAAGSLVAYLLHITGVDPIRYHLLFERFLNRERYTMPDIDLDFPDDKREDILAYIVSK 401 Query: 422 YGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQL 481 YG V+QI+TFGT+ AK V+RDV +V G V + S I +TL + ++ Sbjct: 402 YGNQNVAQIVTFGTLGAKQVLRDVCKVFGENIITVQKFSNNIAQGK-VTLEQTYKENKAF 460 Query: 482 PEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEG------- 534 E E+ E + L +A+ LEG+ R++ HA GVV++ +T PL ++G Sbjct: 461 REHIESSERNRKLYQVAKALEGLPRHSSVHAAGVVLSQDALTKTVPLMKRDKGYSASLQE 520 Query: 535 -KHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDD 593 +TQ+ VE GL+K D LGL LT+++ A++ K K LDI IPLDD Sbjct: 521 ADWMLTQYAMQAVEKVGLLKMDLLGLSNLTLLHKAIQQTQKITKKE----LDITKIPLDD 576 Query: 594 KKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFID 653 ++F++ Q+++T +FQ ES G++ ++K ++P FED++A+++L+RPGP++ + +FI+ Sbjct: 577 PRTFELFQKAQTNGIFQFESDGIRRVLKEMKPTEFEDLVAVLSLYRPGPMEQ--ISHFIN 634 Query: 654 RKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMG 713 RK G E + YP H SL+ +LEPTYGI++YQEQVMQ A ++G++LG AD+LRRA+G Sbjct: 635 RKKGTEIVQYP-----HASLQRILEPTYGILVYQEQVMQAASEMAGFSLGEADILRRAIG 689 Query: 714 KKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLW 773 KK E +A Q+ F +GA G E A ++D +EKFA YGFNKSH+ AYA++SYQ + Sbjct: 690 KKNSETIAAQKEKFVQGAVSKGYKQEDAETVYDYIEKFANYGFNKSHAVAYAMLSYQLAY 749 Query: 774 LKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVY 833 LKA+YP F A+ + K+ + E ++G+KILPP IN+ F ND G IV Sbjct: 750 LKANYPTAFFTALFQNASAKSSKLQDYLVEARQLGIKILPPSINNSFADFVANDSGVIV- 808 Query: 834 GIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGP 893 G+ +IKG+ +E+I++ R + G F+ D R + +L LI +GAFD G Sbjct: 809 GLNSIKGIRRDFVESIVKNRYEYGPFKGFQDFAYRMGAQYTKEPLLVALINAGAFDEFGE 868 Query: 894 HRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGE 953 RA L ++ K+ H G+ + +E ++ + P + E Sbjct: 869 TRATLKANVDAVAKSVKFH------------GLNLSLEDDLEVAFTHVEEEPLLQRIGEE 916 Query: 954 RETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNR 1013 E LG ++ HP ++Y ++ ++ + + GL+V R + T++G + Sbjct: 917 IEVLGFSISPHPSSKYDPLMKSGW----IQAIQSVFEEGYMRFVGLIVDIRKISTRKGEK 972 Query: 1014 IGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDI 1073 + TL D SG ++V++F L + Q L+++ ++++ G+V G ++ + + Sbjct: 973 MAYVTLQDASGMIDVVVFPSTLAEIYQHLQQNTMVLMEGRVKRGQ-KGQWQLQLNRMYPM 1031 Query: 1074 ---DEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRF 1130 D+ ++ L I++ + ++ ++Q + ++ G PV L+ + + F Sbjct: 1032 SFADKLLADSSKKLQIAIRPEKHTPEVYAEIKQLVTKYK-GVTPVELFLVNSKTLVKNSF 1090 Query: 1131 GATWRVSPSDRLLNDLRGLIGSEQVEL 1157 V+ +L+ L ++ E +++ Sbjct: 1091 ANG--VNLESKLIPSLIDILDKECIKI 1115 >UniRef50_C5QT78 DNA polymerase III, alpha subunit n=5 Tax=Staphylococcus RepID=C5QT78_STAEP Length = 1069 Score = 959 bits (2478), Expect = 0.0, Method: Composition-based stats. Identities = 353/1147 (30%), Positives = 586/1147 (51%), Gaps = 93/1147 (8%) Query: 7 VHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIV 66 HL +H+ Y +++ + ++ KA G ALAITD L G KFY A A I PI Sbjct: 3 AHLNIHTAYDLLNASLRIEDVINKAKNEGYTALAITDTHVLYGFPKFYDACIAADIHPIF 62 Query: 67 GADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNE 126 G + L E VLA NN G + L L S + + +WL ++ Sbjct: 63 GMTLILTDGLYKVET---VVLAQNNEGLKALYQLSSAIKMK----EKEEVPLEWLKRYDD 115 Query: 127 GLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAV 186 LI++ V+ E F D + + T + Sbjct: 116 NLIII----------------FKDVESTHLQILEAFNDHTHVYMNHTSDDIIDR------ 153 Query: 187 ELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEM 246 V R+++ D D AI D LD +++ ++ + E+ Sbjct: 154 --------KKVWLQSARYLNREDADTISALQAIRDNSKLDLINESKDFG--EHFPDQNEL 203 Query: 247 CELFADI-PEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMS-TEDYLVKRAKEGLEERL 304 + D+ E + NT I C + + LPQF T + ++YL Sbjct: 204 KNISDDVDEEVIKNTQTIVDLCQAELVYHQSLLPQFVTPNGEVAKEYL-----------W 252 Query: 305 AFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGS 364 + L E +Y ERL+ E ++I MGF YFLIV + I ++K + V VGPGRGS Sbjct: 253 SVLIDKLNEWNLHNDQYLERLKHEYEIITNMGFEDYFLIVSDLIHYAKTHDVMVGPGRGS 312 Query: 365 GAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGR 424 AGSLV+Y L IT +DP++F+LLFERFLNPERV+MPD D+DF +R++VI++V D YG Sbjct: 313 SAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRREKVIQYVQDKYGD 372 Query: 425 DAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEI 484 VS I+TFG + A+AV RDVGR++G ++ ISKLIP G+TL +A++ + Sbjct: 373 LHVSGIVTFGHLLARAVGRDVGRIMGFDETTLNEISKLIPHKLGITLDEAYQQD-NFKAF 431 Query: 485 YEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKS 544 + + DM++KLEG+ R+ HA G++I + FAPL + G +TQ+ + Sbjct: 432 VHRNHRNELWFDMSKKLEGLPRHTSTHAAGIIINDQPLYKFAPLTLGDTG--LLTQWTMT 489 Query: 545 DVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSE 604 + E GL+K DFLGLR L+II+ + + K + +D+ IP DD+K F +L + + Sbjct: 490 EAERIGLLKIDFLGLRNLSIIHQIVTQVKK----DLNIDIDVETIPFDDRKVFKLLSQGD 545 Query: 605 TTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYP 664 TT +FQLES G++ ++KRLQP+ FED++A+ +L+RPGP++ + +I R+H ++ Y Sbjct: 546 TTGIFQLESDGVRSVLKRLQPEHFEDIVAVTSLYRPGPMEE--IPTYITRRHDPSKVEY- 602 Query: 665 DVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQR 724 H L+P+L+ TYG+I+YQEQ+MQIA + ++ G AD+LRRAM KK + +R Sbjct: 603 ----LHPDLEPILKNTYGVIIYQEQIMQIASKFANFSYGEADILRRAMSKKNRAVLESER 658 Query: 725 SVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMA 784 F GA+ NG + +++ +IFDL+ KFA YGF ++H+ +Y+ ++Y +LK +YP F A Sbjct: 659 QHFVNGAKDNGYDEQMSKQIFDLILKFADYGFPRAHAVSYSKIAYIMSYLKVYYPNYFYA 718 Query: 785 AVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEG 844 +++ + + +K ++DE + ILPP+IN + + G I +G IKGVG Sbjct: 719 NILSNVIGSEKKTANMIDEAKHQKINILPPNINESHWFYKATSQG-IYLSLGTIKGVGYQ 777 Query: 845 PIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGD 904 ++ I++ R G F++ FD R + R++LE LI+ GAFD +RA L+ ++ Sbjct: 778 SVKLIVDERYNNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDNFDKNRATLLQAIDQ 837 Query: 905 ALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGH 964 L + + +F +L +Q Y + P++++ + E+E LG Y++ H Sbjct: 838 VLDTTSDVEQDDM-----LFDIL-----TPKQVYEDKEELPDKLLSNYEKEYLGFYISKH 887 Query: 965 PINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSG 1024 P+ + E ++Y+G +L + + + + TK G + TL+D Sbjct: 888 PVEK-EFEKKQYLGIYKLSNAQNFQP-----ILVQFDTIKQIRTKNGQNMAFVTLNDGMT 941 Query: 1025 RLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR-EKYARG 1083 ++ ++F D +Y+ + + + IV G+ F+ + L++ ++++I+ + EK Sbjct: 942 LMDGVIFPDKFKRYEASISNEEMFIVIGK--FEKRNQQLQLIINQIIEINTYKNEKINAS 999 Query: 1084 LAISLTDRQIDDQLLNRLRQSLEPHRSGT---IPVHLYYQRADARARLRFGATWRVSPSD 1140 + + + + L + +SG + V+ + +R ++ RL F + V+ Sbjct: 1000 KKVIIRNAHHLPSNIQEL---IMNEKSGDQHLLEVNAFNERNNSMNRLGFLSKDEVTI-Q 1055 Query: 1141 RLLNDLR 1147 +L + L Sbjct: 1056 QLFDSLN 1062 >UniRef50_Q5Z1D1 Error-prone DNA polymerase n=42 Tax=Bacteria RepID=DNAE2_NOCFA Length = 1146 Score = 957 bits (2474), Expect = 0.0, Method: Composition-based stats. Identities = 315/1122 (28%), Positives = 507/1122 (45%), Gaps = 99/1122 (8%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 + L HS YS +DG ++ LV++A LG+ A+A+TD G V+F A GI Sbjct: 61 PYAELHAHSAYSFLDGASQPEELVEEAVRLGLEAIALTDHDGFYGTVRFAEAAKEWGIAT 120 Query: 65 IVGADFNVQCDLLGDE----------------------------------------LTHL 84 + GA+ ++ HL Sbjct: 121 VFGAELSLGVARPAPRRSARKAARGRGRAVRYAATPEFEHAAAPDSAPRTGEPDPPGPHL 180 Query: 85 TVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEG-LILLSGGRMGDVGRSL 143 VLA GY+ L+ I+ A+ D D L G +L+G R G + +L Sbjct: 181 LVLARGQEGYRRLSREIAAAHLAAGEKGVLRYDIDALTAAAGGHWHILTGCRKGHLRTAL 240 Query: 144 LRGNSA------LVDECVAFYEEHFP-DRYFLELIRTGRPDEESYLHAAVELAEARGLPV 196 +A + + E F DR +EL G P ++ + LA+ GLPV Sbjct: 241 ADDLAAGETGLPRAEAALRDLVERFGADRVSVELTHHGVPADDERNALLIALADRVGLPV 300 Query: 197 VATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEA 256 +AT F AI +LD+ + ++RS EM LFA P+A Sbjct: 301 LATTGAHFAGPEQRRRAMALAAIRARRSLDEMAGWLAPAGGAHLRSGAEMARLFAACPDA 360 Query: 257 LANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTE-DYLVKRAKEGLEERLAFLFPDEEERL 315 +AN V +++ C +RL LP F D E +L + G R + Sbjct: 361 VANAVALSRECAFDLRLIAPQLPPFAVPDGHDENSWLRELVLRGAARRYGPPHAN----- 415 Query: 316 KRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALK 375 P +LE EL+VI +GFPGYFL+V + + + + NG+ GRGS A S V +A+ Sbjct: 416 ---PPAYRQLEHELEVIATLGFPGYFLVVHDIVSFCERNGIL-CQGRGSAANSAVCFAIG 471 Query: 376 ITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGT 435 IT++DP+ +LLFERFL+PER PD D+D ++R++ I+HV YGR+ +Q+ T Sbjct: 472 ITNVDPVANELLFERFLSPERDGPPDIDIDIESDRREEAIQHVYARYGREYAAQVANVIT 531 Query: 436 MAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALI 495 K+ +RD + LG G D SK + G+ E +PE ++ Sbjct: 532 YRGKSAVRDAAKALGFSPGQQDAWSKQVSRWTGVGA----ETGTDIPE---------QVL 578 Query: 496 DMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFD 555 +A LEG+ R+ G H+GG+VI I D P+ V Q+DK D GLVKFD Sbjct: 579 RLAADLEGLPRHMGIHSGGMVICDRPIADVCPVEWARMAGRSVLQWDKDDCAAVGLVKFD 638 Query: 556 FLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRG 615 LGL L+ +++ ++++ + + + + L + ++ML R+++ VFQ+ESR Sbjct: 639 MLGLGMLSALHYMIDLVREHEGVE----VRLHELDLKEPAVYEMLSRADSVGVFQVESRA 694 Query: 616 MKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKP 675 + RL+P F D++ VAL RPGP+Q G V +I R++G E ++Y H +L+ Sbjct: 695 QMATLPRLRPREFYDLVVEVALIRPGPIQGGSVHPYIRRRNGTEPVTY-----DHPALEN 749 Query: 676 VLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKK-PEEMAKQRSVFAEGAEK- 733 L T G+ L+QEQ+MQ+A ++G+T AD LRRAMG K+ PE M + + G + Sbjct: 750 SLGRTLGVPLFQEQLMQMAVDVAGFTAAEADQLRRAMGSKRSPERMRRLKERLYRGMAEL 809 Query: 734 NGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDN 793 +GI E+A +I++ + FA +GF +SHS ++A + + + W K H+PA F A ++ A Sbjct: 810 HGITGEVADRIYEKLYAFANFGFPESHSQSFAALVFYSAWFKLHHPAAFCAGLLRAQPMG 869 Query: 794 TEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDG-EIVYGIGAIKGVGEGPIEAIIEA 852 LV + R G+ + PD+N+ L + + G E+ G+ ++ +G E I+ A Sbjct: 870 FYSPQSLVADARRHGVPVHGPDVNASLAEATLENGGREVRLGLAGVRHIGSELAERIVAA 929 Query: 853 RNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQH 912 R + G + + DL R + E L +GAFD + A + A A Sbjct: 930 RVEHGPYTSVLDLTGRVELTV---AQAEALATAGAFDSVTGPSGAERSGGRRAALWAAGA 986 Query: 913 AKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKE 972 A E G A+ P + + + G+ +P ++L+ Sbjct: 987 AARERAHLLPGTGPAADAP--------ALPGMSALELAAADVWATGISPGSYP-TEFLRA 1037 Query: 973 IERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFT 1032 +G + + G + G V + T G + L+D +G + V+ Sbjct: 1038 RMDELGVIPAGRLLEVRDGSRVLVGGAVTHRQRPATAAG--VTFLNLEDETGMVNVVCSV 1095 Query: 1033 DALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDID 1074 +Y+ L + L+V G+V + G + + A + + Sbjct: 1096 GLWTRYRALAQSASALLVRGRVQ--NAEGAVSVVAEHLQLLS 1135 >UniRef50_C2E9M6 DNA polymerase III alpha subunit n=1 Tax=Lactobacillus ruminis ATCC 25644 RepID=C2E9M6_9LACO Length = 1120 Score = 955 bits (2470), Expect = 0.0, Method: Composition-based stats. Identities = 359/1179 (30%), Positives = 595/1179 (50%), Gaps = 95/1179 (8%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK-P 64 F L+V S YS++ K + V+ A+ +G AL +TD L G +F+ A GIK P Sbjct: 2 FAPLQVKSAYSLLQSPLKISDYVEAASKMGYEALCLTDVDVLYGAFEFFEACRKYGIKKP 61 Query: 65 IVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL 124 ++G + N+Q D +E L +LA N GY+NL + S + P + ++ Sbjct: 62 VIGIELNMQGDG-EEEPISLLLLAKNAAGYRNLVKISSNKLSEN--SLDPHDNPQTCDDI 118 Query: 125 NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHA 184 + L D ++ S V F+++ + L L + G L Sbjct: 119 KDCL---------DGVAVIVSPESIKVASSPKFFKKLQSNGAKLYLGK-GPQFSRELLLD 168 Query: 185 AVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEE 244 A +AE +P +A + V ++ D+ + AI ++ +R S +Y++S Sbjct: 169 AYRIAETLKIPQIALSKVEYLKPDDYFGQVVLQAIDADERINFDQRM---SGSEYLKSPS 225 Query: 245 EMCELF--ADIPEALANTVEIAKRCNVTVRLGEYFLPQFP----TGDMSTEDYLVKRAKE 298 E + A + T ++ + + E LP + +S DYL + + Sbjct: 226 EYQIDYKNAGMETEFGQTEKLLSEIDFWLTPSEISLPHYKFQKGVAKVSAHDYLKRLCAD 285 Query: 299 GLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPV 358 G+ +R PD+ + Y +RL+ EL+VI++MGF YFLIV Q+++ G+ V Sbjct: 286 GI-KRCFRENPDKID------IYQKRLDHELKVIHEMGFEDYFLIVSGITQYARSVGIIV 338 Query: 359 GPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHV 418 GPGRGS AGSLV+Y L+ITD+DP++++LLFERFLN ER MPD D+D KRD++I++V Sbjct: 339 GPGRGSAAGSLVSYVLRITDVDPIKYNLLFERFLNEERHEMPDIDLDIPDNKRDRIIKYV 398 Query: 419 ADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAE 478 D YG ++QIITF T AK +RD R+ G D SK IP MTL +A Sbjct: 399 YDTYGSRHMAQIITFDTFGAKQALRDGCRIFGLTQAETDAWSKAIPFGDKMTLERARRES 458 Query: 479 PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538 ++ + + + L + A+KLEG+ R+ HA G+V++ + + P+ +G + + Sbjct: 459 QRIRNLIADSKRNERLFETAQKLEGLPRHFSTHAAGIVLSDQNLDEVVPVQIGNDG-YLM 517 Query: 539 TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598 TQF K VE AGL+K D LGL+ L I+N A +++N+ +A LD+ IPLDDK + + Sbjct: 518 TQFSKKPVEKAGLLKIDLLGLKNLRILNTAKDLVNQNKAS----KLDLEQIPLDDKATLE 573 Query: 599 MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658 + ++T +FQ +S G++ + +++P+ FED++AL AL+RPGP+++ +D F R+HGR Sbjct: 574 LFYNAKTEGIFQFDSYGIRQAMLKIRPENFEDVVALNALYRPGPIRN--IDEFTARRHGR 631 Query: 659 EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718 + +SYP + L+P+L TYGII+YQEQ MQ++ + G+TLG AD+LR+A+ KK+ E Sbjct: 632 KTVSYPA-----KVLEPILNSTYGIIVYQEQAMQVSSKMGGFTLGEADILRQAISKKEHE 686 Query: 719 EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778 + + R F GA+K G + E A++++D +E+F YGFN+SH+ AY+ +++Q +LKAHY Sbjct: 687 TIERMRVKFVAGAQKKGFSKEDALRVYDYIERFGEYGFNRSHAVAYSKMAFQMAYLKAHY 746 Query: 779 PAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAI 838 PAEF A+++ + N EK + + +KIL PDIN Y F ++D G I++G ++ Sbjct: 747 PAEFYCALLSTVIGNVEKTQSFLAAAKKRKIKILAPDINKSSYDFRISDGG-IMFGFLSV 805 Query: 839 KGVGEGPIEAIIEARNKGG--YFRELFDLCART-------------DTKKLN------RR 877 KG+ I I+ R+ GG F+ L D R D KK R Sbjct: 806 KGIRFDFIRQILAERHAGGYRPFKSLDDFMNRMVERALVDKHDHDGDAKKREKIAKSYRP 865 Query: 878 VLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQS 937 ++E LI GAFD L R+ L+N L +K + +F S Sbjct: 866 IVETLIYVGAFDSLEADRSQLLNRLDVLVKYDQLSMSVPLL--ESLF----------VPS 913 Query: 938 YASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAA 997 + + L+ E+E LG+YL+ HP+++Y + G+ + + Sbjct: 914 KKNVRKLTLDERLEKEKERLGVYLSAHPLDKY----SAFAQGIGASSLASLVPDQQAIVL 969 Query: 998 GLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFD 1057 + + + TK+G+ + + D++G +E F +Y + L+K+ L+ G+V Sbjct: 970 VRIKEIKKIKTKKGDEMAFVSCIDQTGEMEATFFPKQFLRYHKGLKKNAELLFYGRVQ-- 1027 Query: 1058 DFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHL 1117 GL V I+ + + I + +L ++ + G IPV Sbjct: 1028 -DRNGLSFVVDRVEPIEYIALHFPNTITI---------ETKRQLFAIMKRYL-GPIPVI- 1075 Query: 1118 YYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSEQVE 1156 + + + + + ++L ++ L+ E + Sbjct: 1076 -VEDEAKQTKKMLDRRFWLKKDQKMLEEIGELLNRENIR 1113 >UniRef50_Q1IJA3 DNA polymerase III, alpha subunit n=4 Tax=Bacteria RepID=Q1IJA3_ACIBL Length = 1070 Score = 949 bits (2454), Expect = 0.0, Method: Composition-based stats. Identities = 290/1094 (26%), Positives = 525/1094 (47%), Gaps = 59/1094 (5%) Query: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61 ++ +++ L +S +S + G + L+ +A L PA+A+ D + G +F+ A G Sbjct: 3 AQNQYIELHANSAFSFLRGASLPETLIFRAQQLEYPAMALMDGNGVYGSARFHLAAKPNG 62 Query: 62 IKPIVGADFNVQ------------CDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109 ++ VG++ V+ E L +L + GYQNL ++++ R Sbjct: 63 VRAHVGSEIAVRDLGERMAPAAWLPHQWPAEPVRLPLLCESREGYQNLCRMVTRLKMREP 122 Query: 110 GAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFL 168 A + E GL+ L+GG G + +L RG + V F + F+ Sbjct: 123 SKAEGAAVMADVEEFARGLVCLTGGDEGPLASALARGGEPEGHKTVEHLVRMFGRENVFV 182 Query: 169 ELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228 EL R G ++E AAV +A + LP++ATN VR+ D + + ++ AI L D Sbjct: 183 ELQRHGLREQEWRNQAAVRIARSLQLPILATNGVRYADEPEREIADLFTAIRHHVALKDA 242 Query: 229 KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMST 288 R + +Y+R EM LF D+PEA+ANT E+++R + Y P +PT D + Sbjct: 243 GRLLAQNSCRYLRPTAEMARLFRDLPEAVANTWELSQRLTFELDDLGYQFPIYPTPDGES 302 Query: 289 ED-YLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347 D +L KR +EG+ +R + +++ EL +I ++G GYFLIV + Sbjct: 303 MDSFLEKRVQEGVIKRYGA-----KNEPDLYARAQKQVARELALIKKLGLAGYFLIVWDI 357 Query: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF- 406 I++ + N + V GRGS A S V YAL+IT +DP+ +LLFERFL+ R PD D+D Sbjct: 358 IRFCQQNDILV-QGRGSAANSAVCYALEITAVDPVGMELLFERFLSEARGEWPDIDLDLP 416 Query: 407 CMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPD 466 +KR+Q I++V YG + T K+ R+VG+ LG +++++KL+ Sbjct: 417 SGDKREQAIQYVYTRYGHLGAAMTANVITYRGKSAAREVGKALGFDVETLNKLTKLVSTW 476 Query: 467 PGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 E + + + +D+ +++ + R+ G+H+GG+VI ++ Sbjct: 477 EWRGPNDTLENQFESAGFEAKHPHIAKYLDLCSRIQDLPRHLGQHSGGMVICQGQLDSVV 536 Query: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586 P+ V Q+DK D ++K D LGL + +I ++++ + P+D+ Sbjct: 537 PIEPASMPGRSVVQWDKDDCADMHIIKVDLLGLGMMAVIKDCVDLVPRHYGV----PVDL 592 Query: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 A +P +D + LQ+++T +FQ+ESR + R P F D++ VA+ RPGP+ Sbjct: 593 AQLPQNDGDVYRTLQKADTVGMFQVESRAQMASLPRNYPTRFYDIVVQVAIIRPGPIVGN 652 Query: 647 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 M + ++ R+ +EE++Y H L+PVL+ T G+ L+QEQ++++A +++ ++ A+ Sbjct: 653 MANPYMRRRQKKEEVTY-----YHPLLEPVLKRTLGVPLFQEQLLRMAMIVANFSGTEAE 707 Query: 707 MLRRAMGKKKP-EEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYA 765 LRRA+G ++ + M + G +NG + + +I + FA YGF +SH+A++A Sbjct: 708 ELRRALGMRRSTQRMRELGVKLRAGMTENGFDPKTQEEIIQSISSFALYGFPESHAASFA 767 Query: 766 LVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHV 825 L++Y + + K HY A F AA++ LV + R GL++LP D+ ++ V Sbjct: 768 LIAYASAYFKVHYLAAFTAAILNNQPMGFYSPAVLVKDAQRHGLRVLPVDVQRSVWDCTV 827 Query: 826 N---DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKL 882 D+ ++ G+ ++G+ + E ++++R G F DL R LNR+ L L Sbjct: 828 EHAGDERKLRLGLRYVRGLRQETAEILVKSRENHGPFASSEDLGRRVPL--LNRKELVAL 885 Query: 883 IMSGAFDRLGP--HRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYAS 940 GA + +G HR + + + + E+ + Sbjct: 886 AQIGALNWVGGTAHRRDALWQVERV----------------SRRPGPLLQSAEEEEDVSP 929 Query: 941 CQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLV 1000 + L + GL + HP+ Y +E + + + + E G+ + AG V Sbjct: 930 LAQMNWEERLVADFNGTGLTVGKHPMT-YHRERLAKMRVLSAEQLQVAEDGRQVRIAGCV 988 Query: 1001 VAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFS 1060 +A + T +G +++D +G ++ ++ + ++ +R L+V G++ D Sbjct: 989 IARQRPGTAKG--FVFLSIEDETGIANAIISPQLYEQNRVVVFTERFLVVEGKLQNQD-- 1044 Query: 1061 GGLKMTAREVMDID 1074 G + + A+ V + Sbjct: 1045 GVIHVRAQRVQSLH 1058 >UniRef50_Q6G8M4 DNA polymerase III subunit alpha n=62 Tax=Staphylococcus RepID=DPO3A_STAAS Length = 1065 Score = 949 bits (2453), Expect = 0.0, Method: Composition-based stats. Identities = 353/1156 (30%), Positives = 593/1156 (51%), Gaps = 99/1156 (8%) Query: 7 VHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIV 66 +L +H+ Y +++ K V+ A + + ALAITD L G KFY A IKPI Sbjct: 3 AYLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIF 62 Query: 67 GADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNE 126 G V L E VLA NN G ++L L S+ + + L + Sbjct: 63 GMTIYVTNGLNTVET---VVLAKNNDGLKDLYQLSSEIKMNALE----HVSFELLKRFSN 115 Query: 127 GLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAV 186 +I++ ++GD R ++ + + + + D + + Sbjct: 116 NMIIIFK-KVGDQHRDIV--------QVFETHNDTYMDHLSISIQ--------------- 151 Query: 187 ELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEM 246 G V +V + D D AI D LD ++ + +E+E+ Sbjct: 152 ------GRKHVWIQNVCYQTRQDADTISALAAIRDNTKLDLIHDQEDFGA--HFLTEKEI 203 Query: 247 CELFADI-PEALANTVEIAKRCNVTVRLGEYFLPQFPTG-DMSTEDYLVKRAKEGLEERL 304 +L DI E L IA++C+ ++ + LPQ+ T D S + YL + L++ Sbjct: 204 NQL--DINQEYLTQVDVIAQKCDAELKYHQSLLPQYETPNDESAKKYLWRVLVTQLKK-- 259 Query: 305 AFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGS 364 Y ERL+ E +VI MGF YFLIV + I ++K N V VGPGRGS Sbjct: 260 ---------LELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVMVGPGRGS 310 Query: 365 GAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGR 424 AGSLV+Y L IT +DP++F+LLFERFLNPERV+MPD D+DF +R++VI++V + YG Sbjct: 311 SAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERVIQYVQEKYGE 370 Query: 425 DAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEI 484 VS I+TFG + A+AV RDVGR++G ++ IS LIP G+TL +A++ + + Sbjct: 371 LHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLGITLDEAYQID-DFKKF 429 Query: 485 YEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKS 544 + + + +KLEG+ R+ HA G++I + ++APL + G +TQ+ + Sbjct: 430 VHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTG--LLTQWTMT 487 Query: 545 DVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSE 604 + E GL+K DFLGLR L+II+ L + K N +DI IP DD+K F++L + + Sbjct: 488 EAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGIN----IDIEKIPFDDQKVFELLSQGD 543 Query: 605 TTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYP 664 TT +FQLES G++ ++K+L+P+ FED++A+ +L+RPGP++ + +I R+H ++ Y Sbjct: 544 TTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEE--IPTYITRRHDPSKVQY- 600 Query: 665 DVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQR 724 H L+P+L+ TYG+I+YQEQ+MQIA + ++ G AD+LRRAM KK + +R Sbjct: 601 ----LHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESER 656 Query: 725 SVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMA 784 F EGA++NG + +++ +IFDL+ KFA YGF ++H+ +Y+ ++Y +LK HYP F A Sbjct: 657 QHFIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYA 716 Query: 785 AVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEG 844 +++ + + +K +++E + G+ ILPP+IN + + + +G I IG IKGVG Sbjct: 717 NILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEG-IYLSIGTIKGVGYQ 775 Query: 845 PIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGD 904 ++ I++ R + G F++ FD R + R++LE LI+ GAFD G R+ L+ ++ Sbjct: 776 SVKVIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQ 835 Query: 905 ALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGH 964 L + +F +L +Q Y + P+ ++ E+E LG Y++ H Sbjct: 836 VLDGDLNIEQD-----GFLFDIL-----TPKQMYEDKEELPDALISQYEKEYLGFYVSQH 885 Query: 965 PINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSG 1024 P+++ ++Y+ +L + + + + TK G + TL+D Sbjct: 886 PVDK-KFVAKQYLTIFKLSNAQNNKP-----ILVQFDKVKQIRTKNGQNMAFVTLNDGIE 939 Query: 1025 RLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDI---DEAREKYA 1081 L+ ++F + KY++LL + + IVSG+ FD ++ E+ + +E + +A Sbjct: 940 TLDGVIFPNQFKKYEELLSHNDLFIVSGK--FDHRKQQRQLIINEIQTLATFEEQKLAFA 997 Query: 1082 RGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDR 1141 + + I + ++ + ++ + V L + + G ++ D Sbjct: 998 KQIIIR------NKSQIDMFEEMIKATKENANDVVLSFYDETIKQMTTLG---YINQKDS 1048 Query: 1142 LLNDLRGLIGSEQVEL 1157 + N+ + L Sbjct: 1049 MFNNFIQSFNPSDIRL 1064 >UniRef50_C2E227 Possible DNA-directed DNA polymerase n=9 Tax=Lactobacillus RepID=C2E227_9LACO Length = 1040 Score = 948 bits (2451), Expect = 0.0, Method: Composition-based stats. Identities = 350/1059 (33%), Positives = 548/1059 (51%), Gaps = 46/1059 (4%) Query: 9 LRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA 68 L+ S +S++ LVK A G +LA+TD GLV FY A +KP++G Sbjct: 7 LQTLSSFSLLKSPILIDDLVKDAVDKGYSSLALTDINVTYGLVDFYLAAKKVNLKPLLGM 66 Query: 69 DFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA-AGPIIDRDWLIELNEG 127 + + L +A NN GY+N+ L S + ++ L + Sbjct: 67 TIRLNGIVDQAHRYDLISIAKNNQGYKNILRLSSAINLKTDNGDERKVLTLKQLAKYLSD 126 Query: 128 LILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVE 187 + + + R L N L + + ++ P L L ++ Y+ A Sbjct: 127 QVFIVPANITSELRYLAENNEKLGSDFIRELQKIIPSSSDLYLGAYAGKNQ-PYIDYAKS 185 Query: 188 LAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMC 247 +A+ LP+ AT DV+++ +SD + AI G L D Y+R+ E+ Sbjct: 186 MAKQFNLPLAATEDVQYLQASDHFLVKTLRAIEQGQKLVDTSSLALQKGSHYLRTSGELV 245 Query: 248 ELFAD--IPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTED-YLVKRAKEGLEERL 304 + + I AL N +IA C +V + LP++ YL + ++GL +R Sbjct: 246 SAYNECSILSALHNAAKIADECKASVTFTQPELPKYKQSFAPDSKIYLRQLVQKGLAKRF 305 Query: 305 AFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGS 364 Y +RL+ EL++I+QMGF YFLIV + I ++ + GPGRGS Sbjct: 306 --------NGQPIPEIYQKRLDYELKIIDQMGFDDYFLIVWDVINYAHSVDITTGPGRGS 357 Query: 365 GAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGR 424 AGSLVAY+L IT++DP++++LLFERFLNP R MPD D+D +RD++I+++ + YG Sbjct: 358 AAGSLVAYSLAITEVDPIKYNLLFERFLNPARAQMPDIDLDIPDNRRDEIIKYMFEKYGM 417 Query: 425 DAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP-GMTLAKAFEAEPQLPE 483 D +QI+TFGT+AAK +RD RV G + + IP +TLA+A++ L Sbjct: 418 DHAAQILTFGTLAAKQALRDCARVFGLTTIQASKFTHAIPFSKSKITLAQAYQESKALQL 477 Query: 484 IYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDK 543 + A E K L A +LEG+ R+A HA G+VI+ I A L G PVTQ K Sbjct: 478 LVNASELNKLLFKTAMRLEGIPRHASIHAAGLVISDKSIAQIAGLQAGTLG-IPVTQQTK 536 Query: 544 SDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRS 603 + VE GL+K DFLGLR LTI+ +E++ K K LD IPLDD K+ + Q+ Sbjct: 537 AHVEELGLLKIDFLGLRNLTILGDTIELLAKDGIK-----LDPKRIPLDDIKTLQLFQKG 591 Query: 604 ETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISY 663 +T AVFQ ES+G+K++++RL PD FED++A+ AL+RPGP+Q+ +D+FI+RK G+E I+Y Sbjct: 592 KTDAVFQFESQGIKNVLRRLHPDSFEDVVAVNALYRPGPIQN--IDHFINRKQGKEPITY 649 Query: 664 PDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQ 723 PD SL +L+PTYGI++YQEQVMQ AQ+++G++LG AD+LRRAM KKK + + ++ Sbjct: 650 PDS-----SLAKLLQPTYGILVYQEQVMQTAQIMAGFSLGEADLLRRAMSKKKQDLIDQE 704 Query: 724 RSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFM 783 R F GA KNG A K++ +E+FA YGFN+SH+ AY+ +++ +LK HYPA F Sbjct: 705 REKFIAGAVKNGHPQATASKVYAYIEQFANYGFNRSHAVAYSKIAFWLAYLKVHYPAAFF 764 Query: 784 AAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGE 843 A++ + N K + + G+KIL PDIN+ +++ +G+I G+ AIKG+ Sbjct: 765 TALLNSVSANRVKAGEYITQAQEAGVKILAPDINNSQTDYYLV-NGQIQVGLKAIKGLRV 823 Query: 844 GPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLG 903 + I F L D + D K L+ + + +I +G FD++ +R L+ + Sbjct: 824 DFLRNIA---GLPKNFTSLADFLRKIDAKFLSEQAIAAMIKAGCFDKIDENRKMLLANCK 880 Query: 904 DALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTG 963 + ++ + E + + + G+ E+ E E LG T Sbjct: 881 EIVENIKFTGQNETLSE-GLGGIRLEQAPAPNS----------NEKATMEEEVLGFSTTK 929 Query: 964 HPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRS 1023 PI K ER+ L E G + G ++ +++ TK+G+ + T D S Sbjct: 930 TPILVVQKYAERF-NAQALNSFTVNETGIAV---GKLIKLKLIRTKKGDTMAFSTFRDAS 985 Query: 1024 GRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGG 1062 E+ +F + +L++ +I ++ + D + G Sbjct: 986 SEQEITIFPGIYNNISNILKEGQIYLLGIRTQSDRYDAG 1024 >UniRef50_C1F6L4 DNA polymerase III, alpha subunit n=2 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F6L4_ACIC5 Length = 1072 Score = 945 bits (2443), Expect = 0.0, Method: Composition-based stats. Identities = 308/1096 (28%), Positives = 528/1096 (48%), Gaps = 58/1096 (5%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M+E R+V L S +S ++G + L ++AAAL MPA+A+ D L G +F+ + Sbjct: 1 MTE-RYVELHAASAFSFLEGGSNPESLTERAAALQMPAMALLDRNGLYGAARFHTSAQRH 59 Query: 61 GIKPIVGADFNVQ------------CDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRG 108 G++ +GA+ V L E L +L A GYQNL LIS+ R Sbjct: 60 GVQANIGAEVAVPEFGARLTPPAWLPHLWPTEPVRLPLLCATRKGYQNLCQLISRYKLRE 119 Query: 109 YGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYF 167 + L + EGLI L+GG G + +L++G A + + F + Sbjct: 120 PSKQEGAARVNELEQFAEGLICLTGGSEGPLAAALMQGGEAAGQKLLHRLTAIFGHQHVY 179 Query: 168 LELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDD 227 +EL R ++E AA+ +A LP+VATN VR+ D + ++ AI LD Sbjct: 180 VELQRHHDREQEWRNQAALRIAHKLRLPMVATNGVRYASERDREVLDLFTAIRHHTPLDR 239 Query: 228 PKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMS 287 + + +++RS EM LF DIP A+ NT+E++ R + Y P++P Sbjct: 240 AGHLLSANSLRHLRSAREMAALFRDIPAAIENTIELSSRLAFQLSDLGYEFPRYPVPAGD 299 Query: 288 -TEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVME 346 + +L KR +EG+ R + +++E EL +I ++GF GYFLIV + Sbjct: 300 CMDSFLRKRVQEGVALRY-----NSRHNHDLLARVHKQVERELSLIARLGFAGYFLIVWD 354 Query: 347 FIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 406 I++ K + + V GRGS A S+V YAL+IT +DP+ DLLFERFLN R PD D+D Sbjct: 355 IIRFCKQHDILV-QGRGSAANSVVCYALEITAVDPVGMDLLFERFLNENRGEWPDIDLDL 413 Query: 407 CME-KRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465 E KR+Q I++V YG + T K+ R+VG+ LG + R+S L+ Sbjct: 414 PSEEKREQAIQYVYQRYGELGAAMTANVITYRGKSAAREVGKALGFDADALQRLSGLVAN 473 Query: 466 DPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDF 525 + + A + +++ +++ + R+ G+H+GG+VI ++ Sbjct: 474 FEWKGPTDSLAHSFRHAGFDPAQPRIARYLELCTRIQDMPRHLGQHSGGMVICQGQLNQV 533 Query: 526 APLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLD 585 P+ V Q+DK D G++K D LGL + ++ +E+I + + +D Sbjct: 534 VPVERASMPGRTVVQWDKEDCADMGIIKVDLLGLGMMAVLKDCVELIPRHYGER----ID 589 Query: 586 IAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQS 645 +A +P D+ + LQR++T +FQ+ESR + R P F D++ VA+ RPGP+ Sbjct: 590 LAQLPQ-DEAVYRTLQRADTVGMFQVESRAQMASLPRNMPAKFYDLVVQVAIIRPGPIVG 648 Query: 646 GMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGA 705 M+ ++ R+ G+E ++YP H SL+PVL+ T G+ L+QEQ+++IA ++ ++ A Sbjct: 649 KMMHPYMRRRQGKEPVTYP-----HPSLEPVLQRTLGVPLFQEQLLRIAMTVANFSGTEA 703 Query: 706 DMLRRAMGKKKP-EEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764 + LRRA+G ++ E M S G NGI +I + FA YGF +SH+A++ Sbjct: 704 EELRRAVGMRRSWERMKNLESKLRAGMAANGIAPATQEQIIQQISSFALYGFPESHAASF 763 Query: 765 ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824 AL++Y + +LK Y A F A++ +V + R GL++ P DI + Sbjct: 764 ALIAYASAYLKVKYLAAFTCALLNNQPMGFYMPAVIVKDAQRHGLRVKPIDIQISAWPCT 823 Query: 825 VNDDGE----IVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLE 880 + + + + G+G +G+ + EA + AR + G F +L AR L+R+ L Sbjct: 824 LEQEPDDSLSLRLGLGYARGLRQRTAEATLHARQENGPFSSAENLVARVP--ALSRKELA 881 Query: 881 KLIMSGAFDRLG--PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSY 938 L GA + L HR + + A + +F E + + + Sbjct: 882 LLARIGALNSLDQVAHRRDALWQIERA-----------GKPEGPLFAQSNEALREQDVAL 930 Query: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998 P + L + GL + HP++ Y ++ + G + + + GK++ AG Sbjct: 931 P-LMPMTTEERLVADYFGTGLTVGKHPMS-YRRQELDHAGILTASALQQFQDGKLVRVAG 988 Query: 999 LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDD 1058 V+A + T +G +++D +G +++ D ++ + ++ + + L+V G + D Sbjct: 989 CVIARQRPGTAKG--FVFLSMEDETGIANIIVTPDLFERERLIVTRSKFLLVEGPLQNQD 1046 Query: 1059 FSGGLKMTAREVMDID 1074 G + + A+ + + Sbjct: 1047 --GVIHVKAQRLRSLS 1060 >UniRef50_B7CD33 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CD33_9FIRM Length = 989 Score = 943 bits (2438), Expect = 0.0, Method: Composition-based stats. Identities = 323/1045 (30%), Positives = 532/1045 (50%), Gaps = 64/1045 (6%) Query: 32 AALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVQCDLLGDELTHLTVLAANN 91 LG + +TD + G ++FY + I+G + + + +E H +LA N+ Sbjct: 6 KQLGYNHVCLTDHNVMYGTMEFYQLCKKHNVHAIIGLEVD---SIYNEEPFHFILLAKND 62 Query: 92 TGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNS-AL 150 G QNL L S + D +I+ + ++L+ D + + Sbjct: 63 MGLQNLYKLSSI--------IKENVSFDEVIKYAKDCVVLTSSDGKDTFSAYIEHQDLEK 114 Query: 151 VDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDF 210 + V + F D +++ + + + VA + + + S D Sbjct: 115 LSAFVELCKNSFSD-FYVSISMNDSGKKRVDNKIL----KQLDCKCVALSRILYEKSEDV 169 Query: 211 DAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVT 270 + + AI ++++ + Q+Y+RS +EM L+ + L T +IA+ CNV Sbjct: 170 KSLQALRAIAKQTSIENQGLDVQF--QRYLRSPQEMEALYDECD--LLATEQIARMCNVQ 225 Query: 271 VRLGEYFLPQFPTG-DMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETEL 329 + + LP F + + DYLVK K+GLE+RL Y RLE EL Sbjct: 226 MAFQKSKLPVFENKLHIDSSDYLVKLCKKGLEKRLNGNL---------DAVYMNRLEYEL 276 Query: 330 QVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFE 389 VI MGF YFLIV +FI++++ + VGPGRGS AGSLVAY L IT +DP++ +LLFE Sbjct: 277 SVIINMGFTDYFLIVWDFIRYARSKDIFVGPGRGSAAGSLVAYCLGITHIDPIQNNLLFE 336 Query: 390 RFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVL 449 RFLNP R+SMPD D DF ++RD+VI +V +YG+D VS I+TF T+ A+ IRDVGRV+ Sbjct: 337 RFLNPSRISMPDIDTDFPDDRRDEVIRYVRKLYGQDHVSHIVTFNTLQARQAIRDVGRVM 396 Query: 450 GHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAG 509 P VD +SK++ P +TL +A+ + ++D+++ L M +EG+ R+ Sbjct: 397 NIPARIVDELSKMLKNTPKITLMQAYNDNALFRKRIQSDQKLIELFQMCVSIEGLPRHTS 456 Query: 510 KHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWAL 569 HA G+V++ I + PL +G TQF +E GL+K DFLG+R LT I+ + Sbjct: 457 LHAAGIVLSDQPIVNVCPLV-SVDGDIQATQFTAEYLEDLGLIKMDFLGIRNLTTIHEIV 515 Query: 570 EMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFE 629 + +++ + LD+ I L D K++ +L T VFQLES G+ L++++QP+ E Sbjct: 516 TNLKEQKHIS----LDMMKINLKDAKTYQLLSLGNTLGVFQLESSGITTLLQKIQPNKIE 571 Query: 630 DMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQ 689 D+ ++AL+RPG +Q +D +I+RK ++ YP H L+P+L+ TYGI++YQEQ Sbjct: 572 DISVVLALYRPGAMQH--IDTYIERKKDPSKVVYP-----HPLLEPILKETYGIMIYQEQ 624 Query: 690 VMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVE 749 VMQ AQV+ G++L AD LR+AM KKK + M + F GA KN I ++ +IF ++E Sbjct: 625 VMQTAQVIGGFSLAQADTLRKAMSKKKLDVMQNLKEQFILGARKNRIKDSVSNEIFSIME 684 Query: 750 KFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGL 809 +FAGYGFNKSHS AY+LV+YQ +LKA+YP F +++ + + + K + EC R + Sbjct: 685 QFAGYGFNKSHSYAYSLVAYQMAYLKANYPLYFYQSLLNSVIGSGIKTSQYIYECKRRNI 744 Query: 810 KILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCART 869 + DIN + + + I + +KGVG+ IIE + +LFD A+ Sbjct: 745 VVNGCDINHSKAFYTIEQN-SIRMPLQVLKGVGKTIYPTIIE----HVPYTDLFDFLAKA 799 Query: 870 DTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAE 929 K+N + LI GA D G +RA L +L + + + F +++ Sbjct: 800 SMYKINESTIRILIDGGALDCFGYNRATLNENLRKLMDYVNIVRIEDPNDLRFDFSIVSR 859 Query: 930 EPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTE 989 Q + E+ G Y++ HP+ + +Y + L ++ Sbjct: 860 PGIQRIKENPI-------QKAQKEQYVYGFYVSEHPVQSLR--MHKYPNCIPL--LNAVN 908 Query: 990 RGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILI 1049 R + V + R TK+G+ + +++D +G+++ ++ ++ ++ ++KDRI + Sbjct: 909 RDGYMNILVRVASFRTHKTKKGDWMCFMSVEDEAGKMDAVIMPRLYEQQKENIQKDRICL 968 Query: 1050 VSGQVSFDDFSGGLKMTAREVMDID 1074 + G+ + + I+ Sbjct: 969 IQGKKDR-----PTSIVVNRIEWIE 988 >UniRef50_C5B539 DNA polymerase III, alpha subunit n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B539_METEA Length = 1316 Score = 942 bits (2434), Expect = 0.0, Method: Composition-based stats. Identities = 419/1173 (35%), Positives = 613/1173 (52%), Gaps = 92/1173 (7%) Query: 1 MSEPRFVHLRVHSDYSMIDGL---AKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAG 57 M++ FVHL V SD+S G + LV +AAALG PALA+TD N+ G+ KF A Sbjct: 1 MTDRPFVHLNVLSDFSFSHGTRGVSGVKELVARAAALGQPALALTDDMNMFGVYKFSSAA 60 Query: 58 HGAGIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKA-YQRGYGAAGPII 116 G++PIVG V+ + + +LA++ TGY NL L+ A + G Sbjct: 61 AEKGVQPIVGTKIWVRA-GATNVFGTMQLLASSETGYVNLCRLLKVALFPDAEGRISAHK 119 Query: 117 DRDWL-------IELNEGLILLSGGRMGDVGRSL--LRGNSALVDECVAFYEE------H 161 DR ++ E ++ ++ LSGG+ G + R R N+ + +++ E+ Sbjct: 120 DRSYVQLGHLLNAEYSQDVVCLSGGKDGFMSRVWDAARQNAQGAADWLSWVEDPGGLAAV 179 Query: 162 FPDRYFLELIRTGRPDEESYLHA--AVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAI 219 F DR+F E+ R G +E + ++ A +G PVVAT V + DA EI A+ Sbjct: 180 FGDRFFFEICRNGVETDEDFAREAWLLDTAARQGRPVVATTQVLYAAEERHDALEILSAV 239 Query: 220 HDGF----TLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE 275 T+ + +MRS+ EM ELFAD+P A N +E+A+ V + Sbjct: 240 ARKENGSITVGPGTLRARVEARYHMRSDAEMRELFADLPTAYDNALEVARCTAFKVAKRK 299 Query: 276 YFLPQFPTGDMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQM 335 LP+F S + LV +A+ GLEER L EE R EY +RLE EL VI +M Sbjct: 300 PRLPRFDAAGRSEREELVHQARTGLEERFGELGTSEEAR----QEYRDRLEFELGVIGKM 355 Query: 336 GFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPE 395 GF GYFLIV +FI+W+ + VPVGPGRGSGAGSLVAYAL+IT+LDPL F LLFERFLNP+ Sbjct: 356 GFDGYFLIVSDFIKWALAHDVPVGPGRGSGAGSLVAYALRITNLDPLRFGLLFERFLNPD 415 Query: 396 RVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVL------ 449 RVSMPDFD+DFC++ R V+++V + YG D VSQI +FG + +K I+D GRVL Sbjct: 416 RVSMPDFDIDFCIQGRASVVQYVRERYGSDLVSQIASFGEIKSKTAIKDAGRVLTHERDG 475 Query: 450 GHPYGFVDRISKLIPPDPG--MTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRN 507 + Y D ++KL+P G TL +A++ P L + +A E+ + L D ARK+EG+ R Sbjct: 476 SYGYSETDGMTKLVPMVQGNPYTLKRAYDEIPDLRQFVDASEKTRVLFDNARKIEGLLRQ 535 Query: 508 AGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINW 567 G HA G++I + + P+ + P+ QFD E GLVKFDFLGL TL+++ Sbjct: 536 RGVHAAGILIGDVPLEELLPVTWNATDGMPLAQFDLKGAEDVGLVKFDFLGLETLSVLKL 595 Query: 568 ALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDC 627 A + + R + LD IPLDD +++ R T A+FQ ES GMK ++ ++P Sbjct: 596 ARQYVKDSRGVD----LDFDKIPLDDAGVYEIFARGMTNAIFQFESGGMKRALREMKPTR 651 Query: 628 FEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQ 687 ED+IA AL+RPGP++ M+ + D K+GR+E YP+ + E KP+LE T+GI++YQ Sbjct: 652 IEDLIAANALYRPGPME--MIPVYNDCKNGRQEPDYPEPR---EKTKPILEETFGIMVYQ 706 Query: 688 EQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDL 747 EQVM +A+ ++G TLG AD+LRRAMGKK EM Q++ F +GA ++G +A A ++FD Sbjct: 707 EQVMAVARAVAGLTLGQADLLRRAMGKKIKAEMDAQKAGFVKGALEHGTSARTAEELFDK 766 Query: 748 VEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTAD--MDNTEKVVGLVDECW 805 + KFA YGFNKSHSAAYAL++Y T WLK HYP EF AAV++ + +N ++ + ++ Sbjct: 767 IAKFAEYGFNKSHSAAYALIAYHTGWLKKHYPQEFYAAVLSFEAAKNNVHEMSLVKEDLD 826 Query: 806 RMGLKILPPDINSGLYHF---HVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFREL 862 G+ +LPPD+N F G I +G+ IKG+ G I+A++ R G FR + Sbjct: 827 AFGIPLLPPDVNRSTGQFAPERTEQGGAIRFGLVGIKGLSGG-IDAMVAEREANGPFRTV 885 Query: 863 FDLCARTDTKKLNRRVLEKLIMSGAFDRLG--------PHRAALMNSLGDALKAADQHAK 914 D RT NR +E L GAF L +RA + A + A Sbjct: 886 ADFGRRT-AGLFNRSQIENLAAVGAFVGLPIVAGGPPETNRAKAAIAAQFFANGAKREA- 943 Query: 915 AEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIE 974 ++ Q +F E++ + S WP+ + D E +G Y HP+ + Sbjct: 944 -KSTDQFGLFAAEETAREELPEEMHSTAEWPD--IPDREFRAVGFYFDQHPLKMLRPRMA 1000 Query: 975 RY-----------VGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRS 1023 + G V E ++ R T+RG R+ D + Sbjct: 1001 KADLENEDVRVGTRGSVYEIMTARRESETRAVVVAMIENVRKTTTERGPRLD-VEASDTT 1059 Query: 1024 GRLEVMLFTDALDKYQQLLEKDRIL----------IVSGQVSFDDFSGGLKMTAREVMDI 1073 G ++ + + + L E +L V G++ + ++ +V Sbjct: 1060 GNYRFYVYPNRRGQVRTLDEMYAVLEAARGSRQPAAVLGRMVWQ--PDDPRLHVDDVQAA 1117 Query: 1074 DEAREKYARGLAISLTDRQIDDQLLN--RLRQS 1104 + YA + I L R+I + LR Sbjct: 1118 KDYLAPYATDVRIDLDPRRIRLGMAEMGELRAL 1150 >UniRef50_C8WRV2 DNA polymerase III, alpha subunit n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRV2_ALIAD Length = 992 Score = 935 bits (2416), Expect = 0.0, Method: Composition-based stats. Identities = 331/932 (35%), Positives = 524/932 (56%), Gaps = 46/932 (4%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 FVHL VHS +S + L + +V+ A A MPA+AITD + G + FY GI P Sbjct: 2 DFVHLHVHSAFSFRESLLRVEDIVRAAKACEMPAVAITDTNAMYGALSFYRLARAEGISP 61 Query: 65 IVGADFNVQCDLLGDELTH-------LTVLAANNTGYQNLTLLISKAYQRGYGAAGPIID 117 I+G ++ + VLA GY+ LT L + A + P + Sbjct: 62 ILGMQVSLAVGEEEAAPGRAAEWLDTVVVLAMGMEGYRRLTRLATSAR---WKRPVPHVT 118 Query: 118 RDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRTGRP 176 L E ++GL++L GG + L RG + + + P + F+E+ G Sbjct: 119 LRELAESSDGLVVLCGGPESRLFDFLARGEAEAAERRLLQVAGAVPVGQLFVEVQDHGLR 178 Query: 177 DEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSP 236 E L + ++LA+ +P+VAT+DVR++ D H + R + Sbjct: 179 REREGLPSLIQLAKRYDVPLVATHDVRYLAREDASWHRAYAQLARA-----DAAERFATD 233 Query: 237 QQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKR 295 + + ++ EM + FA++PEAL T EIA+ C + + L + +P++ T D ++ L + Sbjct: 234 EFHFATKAEMADRFANLPEALGRTAEIAEMCALDLPLHQVRMPRYATKDGRPADEVLREA 293 Query: 296 AKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNG 355 A+ G R L P+ EERL+R VI +MG+ YFL+V +FI+ + G Sbjct: 294 ARAGAARRYGALSPEVEERLEREL----------DVICRMGYADYFLVVADFIRHAHQQG 343 Query: 356 VPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVI 415 + GPGRGS AGSLVAYAL+ITD+DP+ LLFERFLNP RVS+PD D DF E+R +VI Sbjct: 344 ISTGPGRGSAAGSLVAYALRITDVDPIRHKLLFERFLNPARVSLPDIDTDFEFERRGEVI 403 Query: 416 EHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAF 475 +V + YGRD V+QI TFGT+ A+A +RD GR+ G VDR++KL+P +L A+ Sbjct: 404 RYVIEKYGRDRVAQIGTFGTLQARAALRDAGRMTGADPALVDRLAKLVPGVVHASLDGAY 463 Query: 476 EAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGK 535 + E+ + + + L + A+++E + + HA GV+I+P I D+ PL + Sbjct: 464 QESAAFRELVDGSPDARRLFEAAKRIEDLPHHTSIHAAGVIISPEPIADWIPLDLAAD-D 522 Query: 536 HPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKK 595 PVT + DVE G VK DFLGL+TLT+I+ L+ I KR +D + DK Sbjct: 523 TPVTAYPMEDVEALGFVKMDFLGLKTLTLIDRCLDSIRKRTGVT----IDWRQVDEGDKA 578 Query: 596 SFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRK 655 ++ +L R++T VFQLES GM+ +++ L+P +D+IA+++L RPGP+++ + F D K Sbjct: 579 TYALLTRADTNGVFQLESAGMRRVLRELRPTSLDDVIAVISLNRPGPMEN--IPAFCDAK 636 Query: 656 HGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKK 715 HGR ++YP H L+P+L TYG+I+YQEQ+MQIA ++G++L AD+LRRA+ KK Sbjct: 637 HGRRPVTYP-----HPDLEPILADTYGVIVYQEQIMQIASRMAGFSLAEADLLRRAVSKK 691 Query: 716 KPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 775 K E + ++R+ F +G + G + E A +++DL+ +FA YGFN+SH+AAYA+++++T +L+ Sbjct: 692 KREILDEERARFVDGCVRRGYSEETAREVYDLIVRFADYGFNRSHAAAYAVLAFRTAYLR 751 Query: 776 AHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGI 835 AH+ +F+AA++T M +K+ + R G+++ PP + + V +DG + G+ Sbjct: 752 AHFLPDFLAALLTLSMGAPDKIRLYEQDARRHGIQVRPPSVLRSERGYTVEEDGSLRAGL 811 Query: 836 GAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGP-- 893 +I+ VGE ++ I+ R++ F L D R + + +NR+ L+ L +GA D P Sbjct: 812 ISIRNVGEAAVDHILSLRSE-KPFASLVDFLRRIEPRIVNRKALDSLFAAGALDEFFPEN 870 Query: 894 -HRAALMNSLGDALKAADQHAKAEAIGQADMF 924 R +AL A++ + A+ D+F Sbjct: 871 ASRDVRRQMYEEALLRAEESRQWAAL---DLF 899 Score = 44.2 bits (103), Expect = 0.033, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 51/135 (37%), Gaps = 14/135 (10%) Query: 1030 LFTDALDK-YQQLLEKDRILIVSGQVSFDDFSGGLKMTAR-EVMDIDEAR----EKYARG 1083 F + + ++ + ++ +L + L + E EA A+ Sbjct: 866 FFPENASRDVRRQMYEEALL----RAEESRQWAALDLFVEAEAKSASEASGGASATSAKR 921 Query: 1084 LAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLL 1143 L I R Q+L +++ L G V LY + RARL G+ +RV + L+ Sbjct: 922 LYIRYRSRG-GAQVLREIQRLLA-MSPGETEVALY-DASTGRARL-LGSRYRVEVTQDLV 977 Query: 1144 NDLRGLIGSEQVELE 1158 L +G V L+ Sbjct: 978 AALEERVGLGNVRLK 992 >UniRef50_B1ZZZ1 DNA polymerase III, alpha subunit n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZZZ1_OPITP Length = 1116 Score = 932 bits (2410), Expect = 0.0, Method: Composition-based stats. Identities = 323/1138 (28%), Positives = 527/1138 (46%), Gaps = 99/1138 (8%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS +V L S +S + G ++ L +AA LG+PALAI D + + Y A Sbjct: 7 MS--DYVELHASSAFSFLRGASQPEDLAAEAARLGLPALAIADRDGVYAAARLYQAAREL 64 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQR--------GYGAA 112 ++ IVGA+ + ++ T L +L N TGY NL LIS A + Sbjct: 65 QLRAIVGAEVTL------EDGTALPLLVTNGTGYANLCRLISTAKLEPREAAVVEAWRRE 118 Query: 113 GPIID------------------RDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDEC 154 P++ L E EGLI L+G G V + + Sbjct: 119 HPLVTPADSHEDPRARKRPCFATWRELAEHAEGLIALTGDEDGPVLSAWRNRGADAAAAV 178 Query: 155 VAFYEEHFP-DRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAH 213 A + F DR ++EL R + E++ L +LA AR LP++AT VR+ ++ Sbjct: 179 AARLQTIFGADRLYVELQRRRQRGEDTALCFLADLAAARQLPLLATGGVRYATRAERPIA 238 Query: 214 EIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRL 273 ++ + + TLD R + + ++++RS M ELF D PEA+ N++ +A+R + T++ Sbjct: 239 DVFTCLREHTTLDAAGRLLSPNAERHLRSGRAMAELFQDYPEAVVNSLRLAERLDFTLQN 298 Query: 274 GEYFLPQFPTGDMST-EDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVI 332 +Y P FP G T E L ++ G ER+ L P + +L+ EL +I Sbjct: 299 LDYRFPDFPVGPGETMESVLREQTYAGARERIGELTP----------KLRAQLDRELAMI 348 Query: 333 NQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFL 392 N++GFPGYFLIV + QW G+ + GRGS A S V YAL IT ++PL + LLFERFL Sbjct: 349 NKLGFPGYFLIVWDICQWCHQRGILI-QGRGSAANSAVCYALGITAVNPLRYRLLFERFL 407 Query: 393 NPERV------SMPDFDVDF-CMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDV 445 + RV S PD D+D + R+ VI+ + Y + + T ++ R++ Sbjct: 408 SEGRVGKDGHPSWPDIDLDLPSGDLRESVIQEIYQRYAPRGAAMVANVITYRGRSAAREI 467 Query: 446 GRVLGHPYGFVDRISKLIPP-DPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGV 504 G+VLG P +DR S L D TL + +L + + A++ + R+++G+ Sbjct: 468 GKVLGLPGDVLDRFSALYANGDFPHTLD--LAQQVKLSGLPGGHPRLPAMLALYRQMQGL 525 Query: 505 TRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTI 564 R+ G+H+GG+V P ++ P+ V Q+DK D E GLVK DFLGL + + Sbjct: 526 PRHLGQHSGGMVFCPNRLDRVVPIENASMEGRRVVQWDKDDCEELGLVKVDFLGLGMMAV 585 Query: 565 INWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQ 624 + A + +R PL + +P +D ++ ++R++T VFQ+ESR + + RLQ Sbjct: 586 LQDAFALCTQRG-----EPLTLHTVPPEDPETLATIRRADTIGVFQVESRAQQATLPRLQ 640 Query: 625 PDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGII 684 P F D+ V++ RPGP+ + I R+ G E++ Y D +H +KP+LE T+G+I Sbjct: 641 PQNFYDVAIAVSIVRPGPIAGRVSHPLIKRRAGEEKVVYLDESVEH-LMKPILERTWGVI 699 Query: 685 LYQEQVMQIAQVLSGYTLGGADMLRRAMGK-KKPEEMAKQRSVFAEGAEKNGINAELAMK 743 L+QEQ+++ A VL+G++ A+ LRRA G + + K G G + + K Sbjct: 700 LFQEQMLETAMVLAGFSGAQAEELRRAFGFNRNTARLRKVVEQLQLGMRARGHSEAVVQK 759 Query: 744 IFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDE 803 + + FAGYGF +SH+ ++AL++Y + WLK H PAEF A+++ L+ + Sbjct: 760 VLESSTTFAGYGFPESHAISFALLAYASTWLKVHRPAEFTASLLNNQPMGFYSPATLIQD 819 Query: 804 CWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELF 863 R GLK+ + + V D I G+ +KG+ E + A++ R F + Sbjct: 820 ARRHGLKVKAGCVQRSSWECTVEADDTIRIGLRYVKGLREANVRAMLAQRAAR-AFTSID 878 Query: 864 DLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKA--------------- 908 D ART RR L GA L HR A + + A A Sbjct: 879 DWLARTSFSAAERRA---LAAVGALRTLASHRRAALWQVEAAWSAEETLLQQAGQESSGT 935 Query: 909 ---------ADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 959 D + I M + ++ P + + + L Sbjct: 936 GVSPVESTPGDTTKEDRQIITKRMPESTDMGGTLMPRTATPLAPMTPAERMHADFRGMNL 995 Query: 960 YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTL 1019 + HP+ ER R D+ G+ + AG V+ + T +G +L Sbjct: 996 TVGTHPMALVR---ERLPDVWRAADLPLGRDGERVKVAGSVICRQRPGTAKG--FVFVSL 1050 Query: 1020 DDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077 +D +G V+++ D ++ + + ++ L + G++ D G + + A + ++ A Sbjct: 1051 EDETGIANVVVYPDLFEQRRMTINEEPALCIVGRMQSDR--GVIHVKAETIEALNLAE 1106 >UniRef50_Q7UXK9 Error-prone DNA polymerase n=1 Tax=Rhodopirellula baltica RepID=DNAE2_RHOBA Length = 1145 Score = 932 bits (2408), Expect = 0.0, Method: Composition-based stats. Identities = 298/1090 (27%), Positives = 521/1090 (47%), Gaps = 80/1090 (7%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 R+V L S++S +DG + LV++AA LG LAITD ++ G+V+ + G++ Sbjct: 104 RYVELHCRSNFSFLDGASHPDELVQRAAELGYEGLAITDRESIAGVVRGFSPAQELGLQY 163 Query: 65 IVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL 124 IVG + + + + + + Y + ++S R + + + E Sbjct: 164 IVGTEVH------PTDAPPMVLWPTDRAAYGRMCRMLSTGRMRCEKGRCE-LSFEDIAEH 216 Query: 125 NEGLILLSGGRMGDVGRSLLRGNSALVDECVAF----YEEHFPDRYFLELIRTGRPDEES 180 +G +L+G D RS+ A V++ F + + F DR +L D+ + Sbjct: 217 AQG--ILAGVIATDESRSI-EDQHAHVNDSRQFLRGPFRDVFDDRGYLLASFHRGVDDAA 273 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 L+ A +P++A DVR+ + H+ VAI G +++ + R + Q ++ Sbjct: 274 KATWLRNLSLATDVPLLACGDVRYHSAERMALHDCVVAISQGKSVEQIQSDRLVNSQHHL 333 Query: 241 RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLP-QFPTGDMSTEDYLVKRAKEG 299 RS EE+ EL+ D+P+A+A T+E+A+RC T+ +Y P + M+ ++L + EG Sbjct: 334 RSLEEIAELYRDVPDAVARTIEVAQRCTFTLDQLKYEYPVELAPEGMTPIEHLKRLTWEG 393 Query: 300 LEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVG 359 R P++ E L E+ +I + + YFL V + +++++ + Sbjct: 394 ARGRWPNGVPEK---------VIETLRHEVTLIEDLQYEAYFLTVWDLVRFARSQEIL-C 443 Query: 360 PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVA 419 GRGS A S+V Y L IT +DP DLLFERF++ ER PD DVDF ++R++V++++ Sbjct: 444 QGRGSAANSVVCYCLGITSVDPTHTDLLFERFISRERGEAPDIDVDFEHQRREEVLQYLY 503 Query: 420 DMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEP 479 + YGRD AK+ IR+VG+ L +D ++K LA ++ P Sbjct: 504 EKYGRDRAGMTAVVTCYRAKSAIREVGKALAISPDIIDAVAK---------LAGSYSRNP 554 Query: 480 QLPE------IYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEE 533 +LPE + + + + L G R+ +H GG+V+ + + Sbjct: 555 ELPERCRDAGLDPDTPLGRRFLYLTETLIGFPRHLSQHVGGMVMTAGSLCELCVTENAAM 614 Query: 534 GKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDD 593 V Q++K D++ G++K D L L L+ I E++ + L ++ IP DD Sbjct: 615 PGRSVIQWNKDDLDDIGILKVDILALGMLSAIRRCFELVKDHHNRE----LSLSTIPPDD 670 Query: 594 KKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFID 653 ++DM+ ++T VFQ+ESR ++ RL+P C+ D++ VA+ RPGP+Q MV F+ Sbjct: 671 TPTYDMICAADTMGVFQIESRAQMSMLPRLKPRCYYDLVIEVAIVRPGPIQGNMVHPFLA 730 Query: 654 RKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMG 713 + YP +++++ VLE T G+ ++QEQ M++A V +G+T G AD LRRAM Sbjct: 731 ARENPAAAKYP-----NDAIRKVLEKTLGVPIFQEQAMKLAVVAAGFTPGEADQLRRAMA 785 Query: 714 K-KKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTL 772 ++P + + R+ EG + NG+N E A +F + F YGF +SH+A++AL+ Y + Sbjct: 786 AWRRPGVIDRFRTKLLEGMKANGLNGEFAENVFRQIRGFGEYGFPESHAASFALLVYASC 845 Query: 773 WLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDD---- 828 +LK HYP F AA++ + L+ + + G+++LP DIN + D Sbjct: 846 YLKRHYPTAFCAALLDSQPMGFYAPAQLIRDAQQHGVQVLPVDINDSNIRSKLIPDLNRP 905 Query: 829 -GEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLN--RRVLEKLIMS 885 ++ G+ ++G+ + II AR+ G F L DL R + N + S Sbjct: 906 HPKLRLGLQMVRGLPSAVAQKIIVARDANGPFANLHDLTTRAKLSRSNIATLADADALAS 965 Query: 886 GAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWP 945 A DR RAA+ SL A+ ++ + L + E+ P Sbjct: 966 IAQDR----RAAVWQSL----------AQDDSGDSMPLLADLEPDCSVPEELV----PMS 1007 Query: 946 EQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARV 1005 + + T GL L HP++ + ++ + R D+ G + AGLV+ + Sbjct: 1008 PAEEVKNDYATTGLSLKAHPVSFWRDDL-NALRCKRASDLPKLRDGVHVRVAGLVLMRQR 1066 Query: 1006 MVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKM 1065 T +G I T++D +G + ++LF ++ ++ IV G++ + G + + Sbjct: 1067 PGTAKG--ITFVTMEDETGSMNLVLFAQVWKRFFKIARGSDAWIVDGKLE--NKKGVIHV 1122 Query: 1066 TAREVMDIDE 1075 V D+ E Sbjct: 1123 IVGRVEDLSE 1132 >UniRef50_A4X9U2 DNA polymerase III, alpha subunit n=5 Tax=Actinomycetales RepID=A4X9U2_SALTO Length = 1124 Score = 927 bits (2396), Expect = 0.0, Method: Composition-based stats. Identities = 319/1100 (29%), Positives = 496/1100 (45%), Gaps = 89/1100 (8%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 + L H+++S +DG + L ++A LG+ ALA+TD G+V+F A + Sbjct: 73 PYAELHTHTNFSFLDGASHPEELAEEAVRLGLTALAVTDHDGFYGVVRFAEAARALHLPT 132 Query: 65 IVGADFNVQCDLLGDELT-----HLTVLAANNTGYQNLTLLISKAYQRGYGAAGPII--D 117 + GA+ ++ + HL +LA + GY L IS+A RG PI Sbjct: 133 VFGAELSLDLPGAPNGEPDPLGRHLLLLAHGHEGYARLAATISRAQLRGGEKGRPIYGEL 192 Query: 118 RDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRTGRP 176 + EL + +++L+G R G V +LL + F + +EL G P Sbjct: 193 AEVAAELRDHVLVLTGCRKGHVPAALLTEGVDAAARELDRLTALFGAETVAVELTDHGHP 252 Query: 177 DEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSP 236 + A ELAEA GLP VATN+V + A+ +LD+ + Sbjct: 253 IDADRNDALAELAEAAGLPTVATNNVHYATPGRRRLATTLAAVRARRSLDEIDGWLPAAG 312 Query: 237 QQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTE-DYLVKR 295 ++RS EM FA P A+A E ++L LP +P TE +L Sbjct: 313 AAHLRSGAEMAARFAAYPGAVARAAEFGAELAFDLQLVAPALPAYPVASGHTEMSWLRHL 372 Query: 296 AKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNG 355 G ER + PE +LE EL +I ++GFPGYFL+V + + + ++ Sbjct: 373 TARGARERYGPP--------EAHPEAYAQLEHELNMIEELGFPGYFLVVYDIVTFCREQD 424 Query: 356 VPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVI 415 + GRGS A S V YAL+IT++D + LLFERFL PER PD DVD +R++VI Sbjct: 425 I-YCQGRGSAANSAVCYALRITNVDAVRHRLLFERFLAPERDGPPDIDVDIESSRREEVI 483 Query: 416 EHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAF 475 +HV YGR+ +Q+ + ++ +RDV + G G D SK I G A Sbjct: 484 QHVYARYGREHTAQVANVISYRPRSAVRDVAKAFGFSPGQQDAWSKQI-DRWGSVAAADV 542 Query: 476 EAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGK 535 E P+ ++ A ++ R+ G H+GG+VI + + P+ Sbjct: 543 EGIPE------------PVVAYADAVQTFPRHLGIHSGGMVICDRPVIEVCPVEWGRMPG 590 Query: 536 HPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKK 595 V Q+DK D GLVKFD LGL L ++ +MI R L++ + LDD + Sbjct: 591 RSVLQWDKDDCAAVGLVKFDLLGLGMLAALHHGYDMIGAR--------LELGDMTLDDDE 642 Query: 596 SFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRK 655 +DML R++ VFQ+ESR + RL+P CF D++ VAL RPGP+Q G V +I RK Sbjct: 643 VYDMLCRADAVGVFQVESRAQMATLPRLKPRCFYDLVVEVALIRPGPIQGGSVHPYIRRK 702 Query: 656 HGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKK 715 +G+E +++P H ++ LE T G+ L+QEQ+MQ+A L+G+ AD LRRAMG K Sbjct: 703 NGQEPVTFP-----HPLMRNALEKTLGVPLFQEQLMQLAIDLAGFDAAEADQLRRAMGAK 757 Query: 716 K-PEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWL 774 + E MA+ G + GI ELA ++ + FA YGF +SH+ ++A + Y + WL Sbjct: 758 RSAERMARIADRLYAGMAERGITGELADDVYRKLTAFASYGFPESHAMSFAYLVYASSWL 817 Query: 775 KAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN-------- 826 K ++PA F+AA++ A LVD+ R G+++ PD+N+ + Sbjct: 818 KRYHPAPFLAALLNAQPMGFYSPQTLVDDARRHGVEVRRPDVNASGAGAVLESTPSTRWG 877 Query: 827 ------------DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKL 874 + G+ +++ +G I R G +R++ DL R Sbjct: 878 SQPGEPPHAWGLGGPAVRLGLDSVRTLGGEVAGRIETERAARGPYRDMSDLARRVGLTA- 936 Query: 875 NRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQI 934 LE L + AF G R + S G A + G Sbjct: 937 --AQLEALATADAFACFGVTRRQALWSAGAAAQEHPDRLPGTVPG--------------- 979 Query: 935 EQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVI 994 + L + GL HP ++++E +G V + + E G+ + Sbjct: 980 -TVAPTLPGMGAVDRLVADVWATGLSPESHP-ARFVREQLDALGAVPIARLARVEPGRRV 1037 Query: 995 TAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQV 1054 G+V + T G + L+D +G L V +Y+Q+ + L+V G + Sbjct: 1038 RVGGIVTHRQRPATAGG--VTFLNLEDETGMLNVTCSPGLWQRYRQVAKNSGGLVVRGLL 1095 Query: 1055 SFDDFSGGLKMTAREVMDID 1074 + G + TA + I+ Sbjct: 1096 HRHE--GVINFTADRLDPIE 1113 >UniRef50_D2DXW4 DNA polymerase III alpha subunit (Fragment) n=1 Tax=uncultured Verrucomicrobia bacterium RepID=D2DXW4_9BACT Length = 1040 Score = 922 bits (2383), Expect = 0.0, Method: Composition-based stats. Identities = 299/1074 (27%), Positives = 514/1074 (47%), Gaps = 66/1074 (6%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 +V L S S + G + LV++AA L +PALA+ D + G + + G G++ I Sbjct: 13 YVELHARSACSFLRGASHPESLVREAARLKLPALAVCDRDGVYGSARVHRDGKEHGVRAI 72 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 VGA+ ++ + + VL A TGY+NL +I++A RG P + D L E + Sbjct: 73 VGAELTMEDQSV------VPVLVATRTGYRNLCQMITRAKLRGTKLDAP-VRWDELGEFS 125 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPD-RYFLELIRTGRPDEESYLHA 184 EGL+ L+G G V R+L + A F F+E+ R EE A Sbjct: 126 EGLVALTGDEEGPVRRALASKDRAAAMAATERLRAAFGGHNVFVEIQRHLHRGEERENDA 185 Query: 185 AVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEE 244 +LAEA GLP++ATN V + ++ L+ R Y+ +++++S Sbjct: 186 LADLAEATGLPLLATNGVLHATREERGVLDVFSCARHHTNLESGGRHLAYNAERHLKSPA 245 Query: 245 EMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGLEER 303 M LFA+ PEA+ANT +A R ++ Y P+FP + + L R EG R Sbjct: 246 RMARLFANHPEAIANTERLADRLEFSLENLGYEFPKFPVSPGETMDSVLYHRTMEGARNR 305 Query: 304 LAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRG 363 + P + ++L EL++I ++GF GYFLIV + + + +++ + + GRG Sbjct: 306 YPAMTP----------KVLDQLHKELELITRLGFSGYFLIVWDLVNFCRNDNILI-QGRG 354 Query: 364 SGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF-CMEKRDQVIEHVADMY 422 S A S V YAL IT DP+ +LLFERFL+ R + PD D+D ++R++VI+ V Y Sbjct: 355 SAANSAVCYALGITACDPVAGNLLFERFLSEGRKTWPDIDLDLPSGDRRERVIQEVYRRY 414 Query: 423 GRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLP 482 GR + T ++ +R++G+ L ++R S+L + QL Sbjct: 415 GRHGAAMTANVITFRGRSAMREIGKALNFAPDVLNRFSRLFGNG---DFPHTMDLSAQLR 471 Query: 483 E--IYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQ 540 E I K+ +++ RK+ G+ R+ G+H+GG++I +++ PL V Q Sbjct: 472 EAGIPPEHPRTKSAVELYRKIYGLPRHLGQHSGGMIICQGELSSVVPLENASMPGRVVAQ 531 Query: 541 FDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDML 600 +DK D G++K D LGL + + +LEM R + P+D+A +P+DD ++D++ Sbjct: 532 WDKDDCHDLGIIKVDLLGLGMMAAMQDSLEMCQAR-----DRPVDLATMPMDDPATYDLM 586 Query: 601 QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE 660 R++T FQ+ESR + RL+P F D++ VA+ RPGP+Q G++ ++ R G+E+ Sbjct: 587 CRADTIGTFQVESRAQMATLPRLRPQKFYDVVVEVAIIRPGPIQGGLLHPYLARHAGKED 646 Query: 661 ISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK-KKPEE 719 + Y H LKPVLE T G+ L+QEQ++++A V++ ++ A+ LRRA+ + E Sbjct: 647 VEY-----IHPDLKPVLERTLGVPLFQEQILKVAMVMADFSGSEAEDLRRALSFHRSQER 701 Query: 720 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 779 M + G + G++ E+ +I + FA YGF +SH+ ++AL++Y + W+K H Sbjct: 702 MDQVCVKLRAGMVRKGVDPEIVDRIVHATQSFAVYGFPESHAISFALIAYASCWMKVHRA 761 Query: 780 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 839 EF A ++ LV + R GL+ + + V DD + G+ ++ Sbjct: 762 PEFYAGLLNNQPMGFYSPATLVKDAKRRGLRTRAVSVLVSDWLCTVGDDDTLRLGLCYVR 821 Query: 840 GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 899 G+ + E I+ R + F L D RT + + L L GA + L HR A Sbjct: 822 GLTKEDGERIVAERQR-KSFESLMDFQLRT---AVPKPALRTLAKIGALNGLSEHRRAAQ 877 Query: 900 NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 959 + + + D+F E E +P + + L Sbjct: 878 WEVEIRRE------------EDDLFAREIREEEL------PLKPMDPFERVRADYAGTSL 919 Query: 960 YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTL 1019 HP+ +R R D+ G+ ++ G+V+ + T +G + +L Sbjct: 920 TTGPHPMALVR---DRLPDLWRAADLPLAVNGQRLSIGGMVICRQRPGTAKG--VVFVSL 974 Query: 1020 DDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDI 1073 +D SG ++ + ++ + + +++ L + G++ G + + AR ++ + Sbjct: 975 EDESGVANAIVSSALFEQRRMCITEEQFLQIEGELQH--VEGVIHVKARTILPL 1026 >UniRef50_D1BHX7 DNA polymerase III, alpha subunit n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BHX7_SANKS Length = 1117 Score = 921 bits (2381), Expect = 0.0, Method: Composition-based stats. Identities = 318/1138 (27%), Positives = 509/1138 (44%), Gaps = 105/1138 (9%) Query: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61 + P + L HS +S +DG + L +A LG+ ALA+TD L G+V+F A G Sbjct: 9 ARPEYAELHAHSAFSFLDGANQPEELAAEAYRLGLTALALTDHDGLYGVVRFAEAARQLG 68 Query: 62 IKPIVGADFNVQCDL---------LGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAA 112 + I GA+ ++ + HL VLA GY+NL+ I++ + Sbjct: 69 LPTIFGAELHLPDAVGTLDAPTGVPDPRSEHLLVLARGPQGYRNLSSAIAEGHLSTGRKG 128 Query: 113 GPIIDRDWLIELNEG-LILLSGGRMGDVGRSLLRG---NSALVDECVAFYEEHFP-DRYF 167 + L +G ++L+G R G V +L G + + F D Sbjct: 129 AADHSLEELGARADGQWLVLTGCRKGAVRSALGSGPTWDPRGAATQLDRLVATFGRDNVA 188 Query: 168 LELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDD 227 +E+ TG P ++ LA A + +VAT + D D A+ +LDD Sbjct: 189 VEVTSTGDPYDDERNEHLAALAHAARVDLVATTAAHYAHPRDADLAAALAAVRARSSLDD 248 Query: 228 PKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMS 287 +P ++RS EM + PEA+ + C + L LP +P Sbjct: 249 MDGWLPGAPSAHLRSAGEMLARHSAHPEAVTAAARLGAECAFDLSLVAPNLPPYPVPAGH 308 Query: 288 TED-YLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVME 346 TE +L + + G R P E ER+ P +++ EL++I + FPGYFL+V + Sbjct: 309 TEATWLRELVRRGALHRYG---PRESERV---PGAYAQIDRELRIIEDLTFPGYFLVVYD 362 Query: 347 FIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 406 +++ + NG+ GRGS A S V YAL IT +D + LLFERFL PER PD DVD Sbjct: 363 LVEFCRVNGIL-AQGRGSAANSAVCYALGITAVDAVAHGLLFERFLAPERDGPPDIDVDI 421 Query: 407 CMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI--- 463 ++R++VI+HV D +GR +Q+ + ++ +RD R LG+ G D SK I Sbjct: 422 ESQRREEVIQHVFDTFGRRHAAQVANVISYRPRSAVRDAARALGYDTGQQDAWSKQIERW 481 Query: 464 ------PPDP-----GMTLAK---AFEAEPQLPE-------------------------- 483 PP P GM K A E ++ + Sbjct: 482 GSLRPAPPSPEAVAAGMPEGKPYGALEQRERIRDPLVEPTARDDRAMAREGMWVKGGHAP 541 Query: 484 IYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDK 543 + ++ A++D+A + + R+ G H+GG+V+ + + P+ V Q+DK Sbjct: 542 QRDTEDIPDAVVDLAERFLRLPRHLGIHSGGMVMCDRPVIEVCPVEWARMPGRTVLQWDK 601 Query: 544 SDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRS 603 D AGLVKFD LGL LT + A E ++ L + +P +D + +L + Sbjct: 602 EDCADAGLVKFDLLGLGMLTALRIAFEQVSTHEGVE----LTLHGLPQEDPGVYRLLCAA 657 Query: 604 ETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISY 663 +T VFQ+ESR + RLQPDCF D++ VAL RPGP+Q V +I RK GRE+++Y Sbjct: 658 DTIGVFQVESRAQISTLPRLQPDCFYDIVIEVALIRPGPIQGNSVHPYIARKRGREKVTY 717 Query: 664 PDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKP-EEMAK 722 H L+ L T G+ L+QEQ+MQ++ L+ +T AD LRRAMG K+ E+M Sbjct: 718 -----LHPLLEKSLGKTLGVPLFQEQLMQMSIDLADFTPTEADALRRAMGSKRSTEKMEA 772 Query: 723 QRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEF 782 G EK GI+ +IFD ++ FA +GF +SH+ ++A + Y + WLK H+P F Sbjct: 773 LHERLLSGMEKKGIDRVAGEEIFDKLKGFADFGFPESHAYSFAYLVYASAWLKVHHPEAF 832 Query: 783 MAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDG------EIVYGIG 836 A ++ A LV + R + +L PD+ + V + G+ Sbjct: 833 YAGLLAAQPMGFYSPQSLVADARRHDVPVLRPDLLASQPQAAVEPAPGSARGLAVRLGLA 892 Query: 837 AIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRA 896 +++ V E ++ R + G F +L DL R +L LE L +GA D LG R Sbjct: 893 SVRTVTTEVAERLVAERTEHGPFLDLRDLARRV---RLTTAQLEALATAGALDCLGVERR 949 Query: 897 ALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERET 956 + + G + ++G S E + + Sbjct: 950 EALWAAGALAQERPDTLPGVSVG----------------VSAPMLPGMSEVETAVADTWS 993 Query: 957 LGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGI 1016 G+ +P QY + G + +++ E G+ + G+V + T RG + Sbjct: 994 TGVTTESYP-TQYARPGLVRAGAITVEECRTAEEGRRVAVGGVVTHRQRPGTARG--VTF 1050 Query: 1017 CTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDID 1074 +L+D +G+L V+ +++++ L+V G++ +D G + A + + Sbjct: 1051 LSLEDETGQLNVICSPGLWQRFRRVARTSAALVVRGRLERND--GATNLVAEHLSALS 1106 >UniRef50_D0LSK7 DNA polymerase III, alpha subunit n=2 Tax=Nannocystineae RepID=D0LSK7_HALO1 Length = 1074 Score = 920 bits (2379), Expect = 0.0, Method: Composition-based stats. Identities = 311/1121 (27%), Positives = 515/1121 (45%), Gaps = 104/1121 (9%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS + L S++S ++G + L+++A ALG+ ALA++D L G+V+ + Sbjct: 1 MST--YAPLWCKSNFSFLEGASHPDELIEEAHALGLRALALSDRDGLYGVVRAHVCAEKI 58 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 G K I GA +V D+ + + +L + GY NL L++K +R + + Sbjct: 59 GFKLIHGAQVSV------DDGSQIVLLCRDRAGYANLCHLLTKGRRRSDKGSS-QVSWRE 111 Query: 121 LIELNEGLILLSGGRMG---------------DVGRSLLRGNSALVDECVAFYEEHFPDR 165 + GLI L GG D+ R L + + E F D Sbjct: 112 VCAHAGGLIALWGGAGSLLTRPGENRPGGVPADIPRPLGGRPQSYLGRVADDLREAFGDA 171 Query: 166 YFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTL 225 + R +E AE GLPV A +V + + ++ + TL Sbjct: 172 LYALCARHREAEEVVTEARLRARAERFGLPVAAAVEVLYHSRARRPLQDVLTCLRHHVTL 231 Query: 226 DDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLP--QFPT 283 R + + + S + LF D P A+A T++IA RC + Y P + P+ Sbjct: 232 STAGRYIRANDEHDLHSPQAFGILFDDDPAAVARTLDIAARCQFGLGEIRYRYPSERLPS 291 Query: 284 GDMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLI 343 G +T ++L + + EG R P + +L EL +I+++ + GYFL Sbjct: 292 G-KTTSEWLRELSFEGARWRYRGEVP---------ADVRAQLTRELALIDELDYGGYFLT 341 Query: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 + E +++ + G+ GRGS A S V Y L IT +DP+ LLFERFL+ ER PD D Sbjct: 342 MYEIVRFCRAQGIL-CQGRGSAANSAVCYCLDITAVDPVRMGLLFERFLSRERAEPPDID 400 Query: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 +D ++R++VI+HV D YGRD + + ++ +RDVG+VLG P +DR +KL+ Sbjct: 401 LDIEHDRREEVIQHVYDKYGRDHAAMVAVVIRYRPRSAVRDVGKVLGIPATSLDRCAKLL 460 Query: 464 PPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKIT 523 G+T A+A E P + + L +A ++ R+ H GG ++ + Sbjct: 461 SHYEGIT-AEALEQAGMDPHL----PAHQHLGRLASEILDFPRHLSIHPGGFLLGHEPVH 515 Query: 524 DFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPP 583 P+ V Q+DK+D+E GL K D LGL L ++ +++++ R + Sbjct: 516 SLVPIENGAMAGRTVIQWDKNDLEDLGLFKVDLLGLGALNQLHRCFDLVSEHRGID---- 571 Query: 584 LDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPL 643 L +A IP DD ++DM+ R++T VFQ+ESR ++ RL+P F D++ V++ RPGP+ Sbjct: 572 LSMATIPADDTATYDMICRADTVGVFQIESRAQMSMLPRLRPRYFYDLVIEVSIVRPGPI 631 Query: 644 QSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLG 703 GMV ++ R+HG E+I YP HESL+PVLE T G+ L+QEQVM++A V + YT G Sbjct: 632 TGGMVHPYLRRRHGLEKIEYP-----HESLEPVLERTLGVPLFQEQVMRLAMVAADYTPG 686 Query: 704 GADMLRRAMGK-KKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSA 762 AD LRR M ++ + + R + GI AE A ++F+ + F YGF +SH+A Sbjct: 687 EADQLRRDMAAWRRSGRIDQHRERLVSAMTRKGIAAEFAERVFEQIRGFGEYGFPESHAA 746 Query: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 ++AL++Y T +++ H+PAE+ A++ A ++++ R G+ + P D+ + + Sbjct: 747 SFALIAYATAYMRCHFPAEYACALLNAQPMGFYSPATIINDARRHGVSVRPIDVGASAWD 806 Query: 823 FHV-----------NDDG---------------EIVYGIGAIKGVGEGPIEAIIEARNKG 856 + ++G I G+ +KG+ I +AR + Sbjct: 807 CTLEPLPASQRRTTEENGDSGDSDSDAPARICYAIRMGLRYVKGLRRDAGTRIEDARARA 866 Query: 857 GYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAE 916 F +L D RT +L+ R +L SGA G +R ++ + +A Sbjct: 867 -PFADLGDFVRRT---RLDERSHTRLAESGALAAFGRNRRDVLWQVRGHQRAKSDTLSLP 922 Query: 917 AIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERY 976 G A L + E + W Q L GHP+ + R Sbjct: 923 QTGPAPSLAQLDQLDEIL---------WDYQASLH--------STRGHPLEPLRASL-RA 964 Query: 977 VGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALD 1036 + + G+ + AGLV+ + T G + TL+D SG + ++++ Sbjct: 965 QNIADARSVQRMRHGQRLRYAGLVICRQRPPTAAG--VTFMTLEDESGFVNLVIWQQVWA 1022 Query: 1037 KYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077 Y L + L VSG+V ++ G + + + R Sbjct: 1023 SYGVLAKSTAFLGVSGRVQAEE--GLVHLVVESLWTPQVVR 1061 >UniRef50_D2DXS3 DNA polymerase III alpha subunit n=2 Tax=Verrucomicrobia RepID=D2DXS3_9BACT Length = 1022 Score = 919 bits (2376), Expect = 0.0, Method: Composition-based stats. Identities = 294/1074 (27%), Positives = 504/1074 (46%), Gaps = 74/1074 (6%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 +V L S +S + G + L ++AA L MPA+A+ D + G +F+G G G++ I Sbjct: 3 YVELHARSAFSFLRGGSFPERLAERAAELKMPAMALCDRDGVYGAPRFFGKGREHGVRSI 62 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 VG + + ++ L VL + TGYQNL L+++A RG P ++ + L E Sbjct: 63 VGCELTM------EDGFILPVLVESRTGYQNLCRLLTQAKLRGTKERSP-VNWNDLAEYA 115 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 185 GL+ L G G + + F+E+ R E+ A Sbjct: 116 NGLVALFGMENGKL----------EAGPVPKLLAAFGKENVFVEIQRHLTRGEQRRNQAL 165 Query: 186 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 245 ++LA LP++ATN V + + + ++ + LD R + +++++S E Sbjct: 166 IDLARHHRLPLLATNGVLYAEPRQREVLDVFTCLRHHTQLDLAGRLLEQNAERHLKSGAE 225 Query: 246 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGLEERL 304 M LF D+PEA+ NT +A+R T+ Y P FPT GD + E L + EG R Sbjct: 226 MSALFRDLPEAIDNTERLAERLEFTLENLGYQFPTFPTSGDETMEGMLRRLTYEGARRRY 285 Query: 305 AFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGS 364 + P + ++E EL++I ++GF GYFLIV + +++ ++N + V GRGS Sbjct: 286 SARLPRK---------VVRQIERELELICRLGFAGYFLIVWDLVKFCEENDIMV-QGRGS 335 Query: 365 GAGSLVAYALKITDLDPLEFDLLFERFLNPERV--SMPDFDVDF-CMEKRDQVIEHVADM 421 A S+V Y L+IT DP+++ LLFERFL+ R S PD D+D ++R++VI+ V Sbjct: 336 AANSVVCYCLRITLCDPIKYKLLFERFLSEGRNPRSWPDIDLDLPSGDRRERVIQEVYRR 395 Query: 422 YGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP-DPGMTLAKAFEAEPQ 480 YG + + ++ R++G+VL +DR S L D TL F+ + Sbjct: 396 YGERGAAMTANVISYRGRSAAREIGKVLNFSNDVLDRFSNLFANGDFPHTL--GFQEQVI 453 Query: 481 LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQ 540 I + A + + + G+ R+ G+H+GG+VI + PL V Q Sbjct: 454 KAGIAPEHPRLPAFMRLNEAMRGLPRHLGQHSGGMVICQQSLDRVVPLERASMPGRVVVQ 513 Query: 541 FDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDML 600 +DK D E G+VK D LGL L I L + ++R + +P DD +++M+ Sbjct: 514 WDKDDCEDLGIVKIDLLGLGMLAAIQETLTLCSERG-----REVQFHKLPQDDPATYEMI 568 Query: 601 QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE 660 ++++T VFQ+ESR + R++P CF D++ VA+ RPGP+Q G++ ++ R+ G+E Sbjct: 569 RKADTIGVFQIESRAQMATLPRMKPTCFYDLVIEVAIIRPGPIQGGLMHPYLARREGKEP 628 Query: 661 ISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK-KKPEE 719 +Y E LKPVLE T G+ L+QEQ++ +A L+ ++ A+ LRRA+ + E Sbjct: 629 ETYFGYD---ELLKPVLERTLGVPLFQEQMLGMAMALADFSGSEAEELRRALSFHRSHER 685 Query: 720 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 779 M K + E+ I E +I + V FA YGF +SH+ ++A ++Y + WLK H Sbjct: 686 MEKVQVKLRAALERKEIRPEAIEQIVNAVSSFALYGFPESHAISFAYLAYGSSWLKVHRA 745 Query: 780 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 839 EF AA++ L+ + R G+K P + + + + DG I G+ +K Sbjct: 746 PEFYAALLNNQPMGFYAPATLIKDAQRRGVKFRPVCVQASQWPCVIEADGAIRLGLCMVK 805 Query: 840 GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 899 G+ E +I R + L D+ +R +L + L GAF LG HR + Sbjct: 806 GLQRERAERLIAGR----PYEVLGDVQSRV---RLTKEEWRTLAEIGAFAVLGKHRREAL 858 Query: 900 NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 959 ++ D + + D+F + ++ P + + + Sbjct: 859 WTVEDEYR------------EDDLFPMTTASVKECP-----LPPMNPAERVRADYAGTSV 901 Query: 960 YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTL 1019 + HP+ + R D+ G + AG V+ + T +G + +L Sbjct: 902 TIGRHPMALLRASVPE---AWRAVDLAHASHGTRVRIAGNVICRQRPGTAKG--VVFISL 956 Query: 1020 DDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDI 1073 +D +G ++ ++ + L+ ++ L++ G + +G + A ++ + Sbjct: 957 EDETGIANAIVHPWVFERDRLLITQEAFLVIEGVLQA--RAGTQIVQAEKIEPV 1008 >UniRef50_Q6A780 Error-prone DNA polymerase n=9 Tax=Actinobacteria (class) RepID=DNAE2_PROAC Length = 1134 Score = 917 bits (2371), Expect = 0.0, Method: Composition-based stats. Identities = 318/1136 (27%), Positives = 508/1136 (44%), Gaps = 112/1136 (9%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 + L HS YS +DG + LV +A LG+ LA+TD L G+V+ A G+ Sbjct: 56 PYAELHCHSSYSFLDGASNPEDLVIRAVELGLSGLALTDHDGLYGVVRMAEAAEACGLST 115 Query: 65 IVGADFNV-----QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQ-RGYGAAGPIIDR 118 I+G++ ++ Q + +HL VLA GY+ L ++ AY G P+ D Sbjct: 116 IIGSELSIGVPEPQNGVADPVGSHLLVLANGPEGYRRLAEALTDAYLVEGGRKGRPVHDL 175 Query: 119 DWLIELNEG-LILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRTGRP 176 D L E+ +G +L+G R G V + L++G + + + F D +EL P Sbjct: 176 DHLAEVADGHWTVLTGCRKGAVRQGLVKGMLQ-AEAELRRLVDLFGIDNVLVELTDHRAP 234 Query: 177 DEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSP 236 + ELA L VAT + + F+ A+ +LD+ P Sbjct: 235 TDSRDNDLLAELASRHSLLTVATTAAHYAGAEQFELACALSAVRARRSLDEMDGWLPPGP 294 Query: 237 QQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTE-DYLVKR 295 +RS EM +LF+ +A+ NTV +A+R ++ LP D T +L Sbjct: 295 VARLRSGAEMADLFSRHRDAVDNTVAVAERTAFHLKSVRPRLPDQKVPDGHTPISWLRHL 354 Query: 296 AKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNG 355 +EG P +RL TEL +I GF GYFLIV + +++++ G Sbjct: 355 VEEG-----------RRACYGDDPVAKDRLATELDLIEDRGFAGYFLIVSDIVEFAQSQG 403 Query: 356 VPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVI 415 + GRGS A S V Y L IT +DP+ + L FERFL+ R PD DVDF +R++VI Sbjct: 404 IL-CQGRGSAAASAVCYVLGITVVDPVFYGLPFERFLSVLREEEPDIDVDFDARRREEVI 462 Query: 416 EHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAF 475 ++V YGR +Q+ T ++ +RD+ + LG+ G D S+ + Sbjct: 463 QYVYAKYGRRNAAQVADVITYRPRSAVRDMAKALGYSQGQQDAWSRQMER---------- 512 Query: 476 EAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGK 535 + P LP + E + +A+++ G+ R+ G H+ G+V+ + P+ Sbjct: 513 RSVPPLPHDPDGPEIPDDVTTLAQQVMGLPRHLGIHSAGMVLTREPVGRICPIEPARMFG 572 Query: 536 HPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKK 595 V Q+DK D + GLVKFD LGL L+ ++ + ++I++ + +A+IP ++ Sbjct: 573 RTVLQWDKEDCAWMGLVKFDLLGLGMLSALSISFDLISQHCGRF----WTLASIPRNEPG 628 Query: 596 SFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRK 655 +DML R ++ VFQ+ESR + RL+P CF D+ + L RPGP+Q G V +I R+ Sbjct: 629 VYDMLCRGDSIGVFQVESRAQIGALPRLKPRCFYDLAVEIGLIRPGPVQGGAVHPYIRRR 688 Query: 656 HGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKK 715 G E ++YP H L+PVLE T GI L+QEQ+MQ+A + T AD+LRRAMG K Sbjct: 689 TGVEPVTYP-----HPLLEPVLERTLGIPLFQEQLMQMATTVGNCTAADADLLRRAMGSK 743 Query: 716 KP-EEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWL 774 + E + R+ EG NGI+ + A I+ +E FA +GF +SH+ ++A + Y + W+ Sbjct: 744 RGVERIDSLRTKLFEGMAANGIDDDTAQGIYARIESFANFGFAESHALSFAGLVYTSAWI 803 Query: 775 KAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN-------- 826 K HYPA F+AA++ + LV + R G+ PD+ + Sbjct: 804 KLHYPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRPDVARSSVGADLELLDACCEE 863 Query: 827 -----------------------------DDG--------EIVYGIGAIKGVGEGPIEAI 849 DDG + G+ + G+ I Sbjct: 864 LGSEELETGIDECLHDHDESEIGAFDPNRDDGDHRRDTHFAVRLGLSDVSGINIETATRI 923 Query: 850 IEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAA 909 +E R + F L DL R D +E L ++GAFD L R + +G A Sbjct: 924 VEERER-ESFASLDDLARRVDLSG---EEVEALALAGAFDDLVGSRRGALWQIGQINGVA 979 Query: 910 DQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQY 969 + + Q + + +L + G+ HP+ Q Sbjct: 980 PGQLDVQVVTQPPLL-----------------PEPTQMELLGDDLRATGISTADHPVRQV 1022 Query: 970 LKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVM 1029 + R G V++ + E + I AG+V + T G + L+D +G L V+ Sbjct: 1023 RDALNR-RGVVQVDRLDGVETRRRIEVAGVVTHRQRPGTAGG--VTFLNLEDETGLLNVI 1079 Query: 1030 LFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLA 1085 + A Y+++ R L+V G + D G + + A + +D + +R Sbjct: 1080 VTPGAWRHYRRVARTSRALVVRGILERGD-EGVMSLQADRLEALDLSVPTKSRDFR 1134 >UniRef50_C1AAH7 Error-prone DNA polymerase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AAH7_GEMAT Length = 1113 Score = 916 bits (2367), Expect = 0.0, Method: Composition-based stats. Identities = 296/1118 (26%), Positives = 498/1118 (44%), Gaps = 94/1118 (8%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 ++ L HS +S++DG + LV +AA+ G ALA+TD + G+V+F A + Sbjct: 28 QYAELHCHSAFSLLDGASLPEQLVTRAASFGYQALALTDHDEMGGIVQFGVAARERQLNA 87 Query: 65 IVGADFNVQCDLL----GDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 I+G + V+ L GD T L +LA GY+N++ L+++A P + Sbjct: 88 ILGVELTVRMPHLDGQRGDRRTQLVLLAETREGYRNISTLVTRARMDSERGR-PSVPLAM 146 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 180 L + G+ L+GG G V + L G E F +E P+E Sbjct: 147 LRQHAAGVTALTGGPRGWVPQLLAEGRQYEAFEAAQELHAIFGQHLAIECWDHRLPEERV 206 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 + + LA+ G+P V TN+V + + D H+ A+ TLD+ + + + Sbjct: 207 LVEQLIPLAKWLGVPWVVTNNVYYAEPKDRAVHDALSALRHQRTLDEMGTRLRPNAEWAL 266 Query: 241 RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTED-YLVKRAKEG 299 + + + + + E + T++IAKRC + + +P FP D T D YL + G Sbjct: 267 KDPRLIYQRWRGLEEGVRATLDIAKRCAFRLAGLKPAMPPFPLPDGFTADTYLEEIVLTG 326 Query: 300 LEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVG 359 ER F D + +++ EL I + +FL V ++ ++ G+ Sbjct: 327 ARERWGDRFSD---------VHRQQIAHELAAIRRRDCATFFLTVWRIVRHARSEGIL-C 376 Query: 360 PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVA 419 GRGS A S V Y L +T +DP+ F LLFERFL + PD D+DF R+++++HV Sbjct: 377 QGRGSAASSAVCYCLGVTPVDPIYFGLLFERFLGDDATEEPDIDIDFAHRDRERILQHVY 436 Query: 420 DMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEP 479 +GR+ + + T ++ RD RVLG D ++ T A FE Sbjct: 437 KHFGREHAAMVCEQITWGGRSAARDAARVLGFSPQQGDILADFSDRHGAHTTADLFETAE 496 Query: 480 QLPEIYEA-----DEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEG 534 + A D V+ L + L + R+ H GG V++ + P+ Sbjct: 497 GQQRLTAAGFDLTDPRVQQLAPVMNGLHELPRHRSIHVGGFVLSDEPLGSLVPIEPASMA 556 Query: 535 KHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDK 594 V Q++K D+ G+ K D LGL LT++ L + + +D+A +DDK Sbjct: 557 DRTVIQWEKDDLGPVGMYKIDLLGLGMLTVVQDCLRYLRHTK----NTHIDMAHFNMDDK 612 Query: 595 KSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDR 654 +D + R++T VFQ+ESR + RL+P CF D++ VAL RPGPLQ MV ++ R Sbjct: 613 DVYDTMCRADTVGVFQIESRAQMSTLPRLKPRCFYDLVVEVALIRPGPLQGQMVHPYLRR 672 Query: 655 KHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK 714 + E + YP H +KP+LE T+G+ ++QEQ MQ+A ++ +T AD LR+ MG Sbjct: 673 RAKEEAVDYP-----HPDVKPILERTFGVPIFQEQAMQVAIKMADFTQAQADELRKTMGH 727 Query: 715 KKPEE-MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLW 773 K+ + M K +G EK I+ ++ +I + FA +GF +SH+A++AL+ Y T + Sbjct: 728 KRSKVRMKKVERQLRDGMEKKKIDPKVIERICHQINGFAAFGFPESHAASFALIVYATAY 787 Query: 774 LKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN------- 826 L+ HY E++ A++ A L+++ R G+++ P D+ + + Sbjct: 788 LRYHYAPEYLCAILNAQPMGFYAPGTLIEDAKRHGVEVRPVDLMRSGWDHSLELPDGRTL 847 Query: 827 --DDGEI--------------------VYGIGAIKGVGEGPIEAIIEARNKGGYFRELFD 864 +DG I G+ I+ +G ++EA G FR + D Sbjct: 848 MPNDGTILWGPRHTIDATQTSAEHVAVRLGVRLIRNLGSK-ARKVLEAALADGPFRSIED 906 Query: 865 LCARTDTKKLNRRVLEKLIMSGAFDRLGPH-------RAALMNSLGDALKAADQHAKAEA 917 +R L+ R L +GA D + H R AL L + A Sbjct: 907 AVSRV---TLDARGWRALAEAGALDSMFAHEPPERRRRVALWEVLALTKEPPLPLAPPRR 963 Query: 918 IGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYV 977 S A+C P + + G+ L GHP+ +E Sbjct: 964 A--------------PPPTSLAACTPV---ELTAADYRMTGVSLVGHPMKHARPVLEPN- 1005 Query: 978 GGVRLKDMHPT-ERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALD 1036 G ++D+ + G+ + AG+V+ + T +G TL+D +G L +++ Sbjct: 1006 GVRTIQDIQQHGKDGETVAIAGVVICRQRPPTAKG--FVFLTLEDETGMLNIIITPKRFA 1063 Query: 1037 KYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDID 1074 +L+ ++ +L++ G + SG + + A + + Sbjct: 1064 PNAELIARESVLLIRGILQVQ--SGAVNIRADKFRALQ 1099 >UniRef50_Q47EP3 Error-prone DNA polymerase n=16 Tax=Bacteria RepID=DNAE2_DECAR Length = 1027 Score = 914 bits (2363), Expect = 0.0, Method: Composition-based stats. Identities = 301/1077 (27%), Positives = 495/1077 (45%), Gaps = 67/1077 (6%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS P + L S++S + G + L +A A G ALA+TD +L G+V+ + A Sbjct: 1 MSLPEYAELHCLSNFSFLRGASHPEELAARALAQGYAALALTDECSLAGVVRAHLAAKKH 60 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 G+K IVG++ + L LA N GY NL+ LI+ A +R + D Sbjct: 61 GLKFIVGSEMMTV------DGLKLVFLACNRHGYGNLSALITLARRRAEKGGYTLHRNDL 114 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 180 G L + V N + D + FP R ++ + P++ Sbjct: 115 ESISPSG--ALPDCLVLWVP----GNNPSSADG--EWLVSRFPGRSWIAVELHAGPEDAE 166 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 L L E GLP+VAT DV + ++ A+ T+ + + ++++ Sbjct: 167 RLAGLQSLGEVCGLPLVATGDVHMHIKARRPVQDVLTALRLKSTVFEAGYALFPNGERHL 226 Query: 241 RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQ--FPTGDMSTEDYLVKRAKE 298 RS + L+ PE LA T+ IA RC + Y P+ P+G+ + +L + Sbjct: 227 RSRLRLSRLYP--PELLAETLNIAARCEFLLDELRYEYPEEIIPSGE-TPASWLRSETER 283 Query: 299 GLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPV 358 GL+ R P ER+E EL +I +M + YFL V + + +++ + Sbjct: 284 GLQRRYPAGVPGS---------VRERIEHELGLIAEMAYEAYFLTVYDIVCYARSQDIL- 333 Query: 359 GPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHV 418 GRGS A S V YAL +T++DP LLFERF++ ER PD DVDF E+R+ VI+++ Sbjct: 334 CQGRGSAANSAVCYALGVTEVDPARSALLFERFVSKERGEPPDIDVDFEHERREDVIQYI 393 Query: 419 ADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAE 478 YGR+ + T K +RD GR LG ++ ++ + + E Sbjct: 394 YTKYGRERAALAAALITYRTKGALRDAGRALGFGIAQINALTASLAWWDKR--EQLPERF 451 Query: 479 PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538 +L + V+ + +A L G R+ +H GG VI+ ++ P+ V Sbjct: 452 AEL-GLDPHAPRVEKWLAIAEALRGFPRHLTQHVGGFVISRGPLSRLVPVENAAMSARSV 510 Query: 539 TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598 Q+DK D++ GL+K D L L L+ I L+++ + + P+ + IP +D +++ Sbjct: 511 IQWDKDDLDAMGLMKVDILALGMLSAIRRMLQIVGETTGR----PMKMQDIPAEDPATYE 566 Query: 599 MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658 ML +++ VFQ+ESR ++ RL+P F D++ VAL RPGP+Q MV ++ R+ GR Sbjct: 567 MLCHADSMGVFQVESRAQMAMLPRLRPQNFYDLVVEVALVRPGPIQGDMVHPYLKRRQGR 626 Query: 659 EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK-KKP 717 E I + ++ VLE TYG+ ++QEQVMQ+A V + +T G AD LRRAM K+ Sbjct: 627 ERI-----EEISPAVDAVLERTYGVPIFQEQVMQLAVVAANFTPGEADQLRRAMAAWKRK 681 Query: 718 EEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAH 777 + G N + A +I ++ F YGF +SH+A++AL+ Y + WLK H Sbjct: 682 GGLEPFEQKLLAGMAANDLPESFARRIIAQIQGFGEYGFPESHAASFALLVYASAWLKRH 741 Query: 778 YPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGA 837 +PA F+ ++ + L+ + R G+++LPPD+ + + +++ G + G+ Sbjct: 742 HPAAFLCGLLNSQPMGFYSPSMLIQDARRHGVRVLPPDVMTSDWDSRLDERGAVRLGLRE 801 Query: 838 IKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAA 897 I G + I + F + DL AR L RR L+ L A L HR Sbjct: 802 ISGFSVAAAKRITAVCRENQPFLNVADLAARAG---LQRRDLDLLAAGDALQGLAGHRRQ 858 Query: 898 LMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETL 957 A A+ Q D+F +IE + L + +L Sbjct: 859 ------------AAWAATVAVVQGDLFDGTPVVEAEIELPAP-----SDGENLVADYRSL 901 Query: 958 GLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGIC 1017 GL L HP++ L++ V D+ +I + G+VV + T G I Sbjct: 902 GLTLRSHPLS-LLRQYLAERRFVTAADLKMAGHHTLIRSVGIVVGRQRPGTATG--IVFV 958 Query: 1018 TLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDID 1074 TL+D +G V++ ++K ++ L +L V GQ+ + + + A+ ++D+ Sbjct: 959 TLEDETGLSNVVVHPQLVEKQRRELLGSTLLGVYGQLQVE--GEVVHLVAKRLVDLS 1013 >UniRef50_B7ABG0 DNA polymerase III, alpha subunit n=2 Tax=cellular organisms RepID=B7ABG0_THEAQ Length = 1645 Score = 913 bits (2361), Expect = 0.0, Method: Composition-based stats. Identities = 351/834 (42%), Positives = 492/834 (58%), Gaps = 72/834 (8%) Query: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAAL--GMPALAITDFTNLCGLVKFYGAGHG 59 S+ +F HL H+ +S++DG AK L+K PALA+TD NL G V+FY Sbjct: 3 SKLKFAHLHQHTQFSLLDGAAKLQDLLKWVKETTPEDPALAMTDHGNLFGAVEFYKKATA 62 Query: 60 AGIKPIVGADFNVQCDLLGDE---------LTHLTVLAANNTGYQNLTLLISKAYQRGYG 110 G+KPI+G + V + D HLT+LA + TGYQNL L S+AY G+ Sbjct: 63 MGVKPIIGYEAYVAAESRFDRKRGKGLDGGYFHLTLLAKDFTGYQNLVRLASRAYLEGF- 121 Query: 111 AAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170 P IDR+ L E +EGLI LSG ++ + +L+ L + + Y F DR+F+E+ Sbjct: 122 YEKPRIDREILREHSEGLIALSGCLGAEIPQFILQDRLDLAEARLNEYLSIFGDRFFIEI 181 Query: 171 IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230 G P+++ E A+ GL +VATND ++ D AHE+ +AI TLDDP+R Sbjct: 182 QNHGLPEQQKVNQVLKEFAQRYGLGMVATNDGHYVRKEDARAHEVLLAIQSKTTLDDPER 241 Query: 231 PRNYSPQQYMRSEEEMCELFADIP---EALANTVEIAKRCNVTVRLGE---YFLPQFPTG 284 R + Y+++ EEM + ++ E NTVEIA+ C+V + +G+ Y +P+FP Sbjct: 242 WRFPCDEFYVKTPEEMRAMLPEVEWGDEPFDNTVEIARMCDVDLPIGDKMVYRIPRFPLP 301 Query: 285 DMSTE-DYLVKRAKEGLEERLAFLF----------------PDEEERL----------KR 317 + TE YL + GL R P +ER+ K Sbjct: 302 EGRTEAQYLRELTFLGLLRRYPDRITEAFYREVLRLLGTMPPHGDERVLAEALARVEEKA 361 Query: 318 RPEYDERL------------------ETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVG 359 E +RL EL VI +MGFPGYFLIV ++I W++ +GV VG Sbjct: 362 WEELRKRLPPLEGVREWTAEAILHRALYELSVIERMGFPGYFLIVQDYINWARGHGVSVG 421 Query: 360 PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVA 419 PGRGS AGSLVAYA+ IT++DPL F LLFERFLNPERVSMPD D DF +RD+VI++V Sbjct: 422 PGRGSAAGSLVAYAVGITNIDPLRFGLLFERFLNPERVSMPDIDTDFSDRERDRVIQYVR 481 Query: 420 DMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEA 477 + YG D V+QI TFG++A+KA ++DV RV G P+ + ++KLIP G L +A + Sbjct: 482 ERYGEDKVAQIGTFGSLASKAALKDVARVYGIPHKKAEELAKLIPVQFGKPKPLQEAVQV 541 Query: 478 EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHP 537 P+L E DE ++ +I++A +LEG+ R+A HA GVVIA +TD PL D+EG P Sbjct: 542 VPELRAEMEKDERIRQVIEVAMRLEGLNRHASVHAAGVVIAAEPLTDLVPLMRDQEG-RP 600 Query: 538 VTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSF 597 VTQ+D VE GL+K DFLGLRTLT ++ A ++ + + LD +PLDD K+F Sbjct: 601 VTQYDMGAVEALGLLKMDFLGLRTLTFLDEARRIVKESKGVE----LDYDRLPLDDPKTF 656 Query: 598 DMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHG 657 ++L R ET VFQLES GM ++ L+P ED+IALV+L+RPGP++ + +I R HG Sbjct: 657 ELLSRGETKGVFQLESGGMTATVRGLKPRRLEDIIALVSLYRPGPMEH--IPTYIRRHHG 714 Query: 658 REEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKP 717 +E +SY + + L+P+L+ TYGI +YQEQ+MQIA ++GY+LG AD+LRRAMGKK+ Sbjct: 715 QEPVSYAEFPHAEKYLRPILDETYGIPVYQEQIMQIASQVAGYSLGEADLLRRAMGKKRV 774 Query: 718 EEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQT 771 EEM K R F GA++ G+ E A ++FD++E FA YGFNK A +V ++T Sbjct: 775 EEMQKHRERFVRGAKERGVPEEEANRLFDMLEAFANYGFNKCLPARAKVVDWRT 828 Score = 333 bits (853), Expect = 3e-89, Method: Composition-based stats. Identities = 123/394 (31%), Positives = 202/394 (51%), Gaps = 22/394 (5%) Query: 759 SHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINS 818 SH+AAY+L+SYQT ++KAHYP EFMAA+++ + +++KV + + +G+ +LPPDIN Sbjct: 1241 SHAAAYSLLSYQTAYVKAHYPVEFMAALLSVERHDSDKVAEYIRDARALGIPVLPPDINR 1300 Query: 819 GLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRV 878 + F V + EI++G+ A+K VGE AI+E R +GG F+ L D R + +N+R Sbjct: 1301 SGFDFKVVGE-EILFGLSAVKNVGEMAARAILEERERGGPFKSLGDFLKRLPEQVVNKRA 1359 Query: 879 LEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSY 938 LE L+ +GA D G RA L+ SL L+ A + + G +F + E P Sbjct: 1360 LESLVKAGALDAFG-DRARLLASLEPLLRWAAETRERGRSGLVGLFAEVEEPP------L 1412 Query: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERG----KVI 994 P E +L E+E LG+Y++GHP+ +Y R V ++++ RG + Sbjct: 1413 VEASPLDEITMLRYEKEALGIYVSGHPVLRY--PGLREVASCTIEELSEFVRGLPGRPKV 1470 Query: 995 TAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQV 1054 +G+V T+ G + TL D +G LEV++F A + L++D L+V +V Sbjct: 1471 LLSGMVEEVVRKPTRSGGMMARFTLSDETGALEVVVFGRAYEGVSPKLKEDIPLLVLAEV 1530 Query: 1055 SFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIP 1114 L++ A+ V ++E E + L + + +D++ + RL+ L+ H G++P Sbjct: 1531 EK---GEELRVLAQAVWTLEEVLEA-PKALEVEVDHALLDEKGVARLKSLLDEH-PGSLP 1585 Query: 1115 VHLYYQRADARARLRFGATWRVSPSDRLLNDLRG 1148 V+L Q A V + L L Sbjct: 1586 VYLRVQGPFGEALFALRE---VRVGEEALGLLEA 1616 >UniRef50_C1CZH7 Putative DNA-directed DNA polymerase (DNA polymerase III, alpha subunit) n=2 Tax=Bacteria RepID=C1CZH7_DEIDV Length = 1341 Score = 912 bits (2358), Expect = 0.0, Method: Composition-based stats. Identities = 353/855 (41%), Positives = 515/855 (60%), Gaps = 34/855 (3%) Query: 321 YDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLD 380 R E EL VIN MGFP YFLIV ++I W+KD + VGPGRGSGAGSLVAYA++IT+LD Sbjct: 480 ILRRAEYELSVINNMGFPDYFLIVADYINWAKDQDISVGPGRGSGAGSLVAYAMRITNLD 539 Query: 381 PLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKA 440 PLEF LLFERFLNP+R+SMPDFD+DF +R +VI +V D YG D V+QI TFGTMA+KA Sbjct: 540 PLEFALLFERFLNPDRISMPDFDIDFNDARRSEVIAYVQDKYGEDKVAQIATFGTMASKA 599 Query: 441 VIRDVGRVLGHPYGFVDRISKLIPPDPGMT--LAKAFEAEPQLPEIYEADEEVKALIDMA 498 ++DV RV+G Y VD++SKLIP G + L +A EA P + ++ D ++ + A Sbjct: 600 CLKDVARVMGLEYAKVDKVSKLIPIKFGKSYSLEQAREAVPDIAQMLAEDGQLLEAYEFA 659 Query: 499 RKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLG 558 +KLEG+TR+A HA GVVI T++TD P+ D G+ V Q+D VE GL+K DFLG Sbjct: 660 QKLEGLTRHASVHAAGVVIGKTQLTDLVPVMRDTSGEGMVCQYDMKAVEDIGLIKMDFLG 719 Query: 559 LRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKD 618 LRTL+ ++ A ++ + R +D AIP DD ++++++ R +T VFQLE G+ D Sbjct: 720 LRTLSFLDEARRIMRESRGIE----IDFDAIPFDDARTYELMSRGDTKGVFQLEGAGIAD 775 Query: 619 LIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISY--PDVQWQHESLKPV 676 +RL+P D+IAL AL+RPGP+++ + ++ R HG EE+ Y + L+ + Sbjct: 776 ASRRLKPRRLADIIALSALYRPGPMEN--IPTYVRRHHGLEEVDYVRDGFPTSAKYLEKI 833 Query: 677 LEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGI 736 L TYGI +YQEQ+MQIA ++G++LGGAD+LRRAMGKK EEM +QR +F EGA NG+ Sbjct: 834 LAETYGIPVYQEQIMQIASEVAGFSLGGADLLRRAMGKKDAEEMKRQRQIFVEGAGNNGV 893 Query: 737 NAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEK 796 E A K+FDL++ FA YGFNKSHSAAY +++YQT WLKA+YP EFMAA++T + +++K Sbjct: 894 PKEEANKLFDLLDAFANYGFNKSHSAAYGVITYQTAWLKANYPVEFMAALLTVERRDSDK 953 Query: 797 VVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKG 856 V V + +M + +LPPDIN F V + EI++G+ AIKG+GE ++ I+E R + Sbjct: 954 VAEYVSDARKMDVHVLPPDINRSAPDFAVEGE-EILFGLYAIKGLGEAAVQRILEERQRA 1012 Query: 857 GYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAK-- 914 G ++ L D C+R K NR+ +E LI SGAFD+ G R L++SL DAL+ A A Sbjct: 1013 GRYKSLADFCSRLGNKVCNRKAMESLIKSGAFDQFGE-RNQLLHSLEDALEDAASTADIN 1071 Query: 915 -AEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEI 973 A G + MFG+ EE ++ + P+ + L E+E LGLY++GHP+ Q+ E Sbjct: 1072 AKAASGMSMMFGM--EEVKKERPLRSGIPPFTDLERLSIEKEALGLYISGHPLEQH--EG 1127 Query: 974 ERYVGGVRLKDMHPTERGKVI--------TAAGLVVAARVMVTKRGNRIGICTLDDRSGR 1025 R R+ D+ + + AG++ TK G + L D SG+ Sbjct: 1128 LREAASCRISDLDTWFTQQNVAPGKRLKAVLAGMIEGVVKKPTKSGGMMARFILADESGQ 1187 Query: 1026 LEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLA 1085 E++ F+ A D+ Q+ L D +V ++ +D GGL+ A EV+ +++ E + + Sbjct: 1188 TELVAFSRAYDRIQEKLVNDTPALVIVELESED--GGLRAIAEEVVSVEQLAE-VPKVMY 1244 Query: 1086 ISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLND 1145 +++ + + L+ H +G++P +L + + + S + Sbjct: 1245 VTIDLENASPDAVGEFQSILDEH-AGSMPTYLRLETPEQFVLYQLDHGMG---SHEAIRV 1300 Query: 1146 LRGLIGSEQVELEFD 1160 L L +D Sbjct: 1301 LNQTFPWADAYLAYD 1315 Score = 309 bits (793), Expect = 3e-82, Method: Composition-based stats. Identities = 105/324 (32%), Positives = 157/324 (48%), Gaps = 23/324 (7%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALG----MPALAITDFTNLCGLVKFYGAGHGA 60 RF HL H+ YS++DG AK L+K A + PALA+TD N+ G V FY A Sbjct: 33 RFAHLHQHTQYSLLDGAAKLKDLLKWAKEVTPEGCTPALAMTDHGNMHGAVHFYNYAQAA 92 Query: 61 GIKPIVGADFNV-----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109 G+KPI+G + V + + HLT+LA + GYQNL L S+ Y GY Sbjct: 93 GVKPIIGYEAYVVPGQGTRRDRTRAQDGEKGIFHLTLLARDFEGYQNLCRLSSRGYTEGY 152 Query: 110 GAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLE 169 P ID + L E ++G+I SG +V + LL+G + + +Y E F + Y++E Sbjct: 153 -YYKPRIDHELLQEHHKGVIAFSGCLGSEVQQLLLQGREEDAKKRLLWYRELFGENYYIE 211 Query: 170 LIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPK 229 + G P+++ A+ G+ +VATND ++ SD AHE +AI TL D Sbjct: 212 IQDHGLPEQKRNNPILRAWAQELGIGMVATNDGHYVKKSDATAHETLLAIQTKATLADEN 271 Query: 230 RPRNYSPQQYMRSEEEMCELFA--DIPEA-LANTVEIAKRCNVTVRLGE---YFLPQFPT 283 R + + Y+++ EEM D E NT IA CNV + +G+ Y +P P Sbjct: 272 RFKFPCDEFYVKNLEEMQAALPVSDWGEEPFDNTSAIADLCNVDLPVGKKRVYQMPALPI 331 Query: 284 GDM-STEDYLVKRAKEGLEERLAF 306 + + + L + G +R Sbjct: 332 PEGRTMAEELRIQTYRGTVKRYPG 355 >UniRef50_D0MJZ2 DNA polymerase III, alpha subunit n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MJZ2_RHOM4 Length = 1607 Score = 910 bits (2353), Expect = 0.0, Method: Composition-based stats. Identities = 309/722 (42%), Positives = 441/722 (61%), Gaps = 37/722 (5%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 RF HL H+ YS++DG A+ L+++AA + A+AITD NL G+ +FY GI+P Sbjct: 3 RFSHLHCHTQYSLLDGAARIQTLLERAAEYEIEAVAITDHGNLFGVPEFYRTAEKIGIQP 62 Query: 65 IVGADFNVQCDLLGDE----LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 I+G +F + D H +LA N TGY+NL L S +Y GY P ID + Sbjct: 63 IIGCEFYLTPTSRHDRNERTRYHQVLLAKNETGYRNLIKLSSLSYLEGY-YYKPRIDHEL 121 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 180 L + +EGLI + G++ +++L + +Y E F + Y++E+ G P+++ Sbjct: 122 LTQYHEGLIATTCCLQGEIPQTILHKGEEAARKLFEWYLELFGEDYYIEIQDHGLPEQKK 181 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 + A G+ V+ATNDV ++D +DF+ H++ + + G + DP R R + Q Y+ Sbjct: 182 INAILLRWAREYGVRVIATNDVHYVDRTDFEPHDVLLCLQTGKDMSDPSRLRFDNDQFYL 241 Query: 241 RSEEEMCE-LFADIP-----EALANTVEIAKRCNVTVRLGEYFLPQFPTG---DMSTEDY 291 +S EM + L +DI E +ANT E+A +C + G+ +P +P + + Y Sbjct: 242 KSPAEMRQALLSDIEPRLVDEMMANTGEVADKCRFQLPTGKLLMPHYPIPPEYNGDMDAY 301 Query: 292 LVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWS 351 L EG R P E ERLE EL +I +MGF GYFLIV +F + Sbjct: 302 LRDLVFEGARRRYGDPLPH---------EVAERLEHELAIIKKMGFAGYFLIVQDFTTAA 352 Query: 352 KDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKR 411 + GV VGPGRGS AGS VAY L IT++DPL++DLLFERFLNPERVSMPD D+DF R Sbjct: 353 RRLGVRVGPGRGSAAGSAVAYCLGITNIDPLKYDLLFERFLNPERVSMPDIDIDFDDRGR 412 Query: 412 DQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL 471 +VI++V YGR+ V QIITFGTM AK IRDV RVLG P DRI+KLIP P +TL Sbjct: 413 GKVIDYVVQKYGRENVCQIITFGTMGAKMAIRDVARVLGIPLAEADRIAKLIPDGPKVTL 472 Query: 472 AKAFEAEPQLPEIYEA-DEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAP--L 528 A+A+E P+L + E+ D +++ L+ A LEG R+ G HA GV+IAP +++D+ P + Sbjct: 473 AQAYEEVPELRALKESNDPQIRKLLHYAEVLEGSVRHTGVHAAGVIIAPGRVSDYVPVAV 532 Query: 529 YCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAA 588 ++ TQ+D +E GL+K DFLGL+TLTI+N AL++I + +D+ Sbjct: 533 AKGKDNDTVTTQYDGKWIEEFGLLKMDFLGLKTLTILNDALQLIKENHGIE----IDLDQ 588 Query: 589 IPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMV 648 IPLDD K+F++ QR ET A+FQ ES GM++ +++L+P +D+IA+ AL+RPGP+ ++ Sbjct: 589 IPLDDPKTFELFQRGETVAIFQFESEGMREWLRKLKPTSIDDLIAMNALYRPGPMD--LI 646 Query: 649 DNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADML 708 N+I RKHG E + YP H L+PVL+ TYGI +YQEQVMQ+AQV++GYTLG AD+L Sbjct: 647 PNYIARKHGLEPVEYP-----HPLLEPVLKNTYGIPIYQEQVMQMAQVMAGYTLGQADLL 701 Query: 709 RR 710 RR Sbjct: 702 RR 703 Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats. Identities = 169/475 (35%), Positives = 254/475 (53%), Gaps = 33/475 (6%) Query: 712 MGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQT 771 MGKKK EEM K R +F GA + G++AE A +FD++EKFAGYGFNKSHSAAY++V+YQT Sbjct: 1128 MGKKKVEEMKKHREIFVAGAAERGVDAETANAVFDMMEKFAGYGFNKSHSAAYSIVAYQT 1187 Query: 772 LWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEI 831 +LKA+YPAEFMAA MT++M +T+K+ ++DE RMGL++LPP IN HF V +DG I Sbjct: 1188 AYLKANYPAEFMAAAMTSEMGDTKKLAVVLDEARRMGLELLPPSINRSQAHFTV-EDGRI 1246 Query: 832 VYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRL 891 +G+GAIKGVG G IEAI++AR K G FR +FDL D + +N++VLE L +GA D L Sbjct: 1247 RFGLGAIKGVGLGAIEAILKAREKHGPFRTIFDLIRHLDLRVVNKKVLESLARAGALDEL 1306 Query: 892 GPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLD 951 HRA L+ ++ A++ A + GQA +FG + QPW L Sbjct: 1307 EGHRAQLVEAIDLAVQYAQKVQADRMAGQASLFGESGTRTALPPPNLPVVQPWSRARCLK 1366 Query: 952 GERETLGLYLTGHPINQYLKEIERYVGGV------RLKDMHPTERGK------------- 992 ERE +G Y+TGHP+ Y E+ + L++ G Sbjct: 1367 EERELIGFYVTGHPLEAYRAEVNAFATTTLAELSRTLEEADMPRNGSTNGHTNGTTNGHA 1426 Query: 993 ------VITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDR 1046 G++ + + + G + +++D +G+ E+++F+ L++ LE D Sbjct: 1427 YRPARPRHRICGIITEVQRRIGRNGRPLAFASIEDFTGQGELVIFSSVLERVMPYLEVDA 1486 Query: 1047 ILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLE 1106 +++V GQV G +K+ E+ + + R++ L + L Q+ + L+R Sbjct: 1487 VVLVEGQVEV--RGGSVKVLVDELWPMWKVRDELVEALVVQLDLEQVRPEQLDRFHALCR 1544 Query: 1107 PHRSGTIPVHLYYQRAD---ARARLRFGATWRVSPSDRLLNDLRGLIGSEQVELE 1158 H +G ++ D R RL V +D L+ L G+E + LE Sbjct: 1545 EH-AGRCKLYFDLLSPDFPGGRQRL-LSRRCLVELNDTLMQQTLRLFGAEAIRLE 1597 >UniRef50_C6XNZ2 DNA polymerase III, alpha subunit n=10 Tax=Bacteria RepID=C6XNZ2_HIRBI Length = 1096 Score = 907 bits (2345), Expect = 0.0, Method: Composition-based stats. Identities = 278/1081 (25%), Positives = 503/1081 (46%), Gaps = 56/1081 (5%) Query: 3 EPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGI 62 P++ L V +++S + G + V +A LG+ A+ I D L G+V+ + A G+ Sbjct: 10 TPQYAELAVTTNFSFLRGASHAEEFVAQAKNLGLSAIGIADRNTLAGVVRAHVAAKEHGV 69 Query: 63 KPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLI 122 + ++GA ++ + L + Y L+ L+S R I + +I Sbjct: 70 RLLIGARLDLT------DGISLLCYPTDRAAYGRLSHLLSDGKMRAPKGEC-HISLENVI 122 Query: 123 ELNEG--LILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 180 +G I++ + V L+ + + ++ LI Sbjct: 123 AYADGQVFIVIPPMQPDAVFEEKLQILMEKFASSLEGSSPSPDKKIYMALIHQYGGKNRE 182 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 L LA LP++ATN+V + SS +I I + +L+D + ++++ Sbjct: 183 RLAQIAALASKYNLPLIATNNVLYHVSSRRPLQDILTCIREHVSLEDAGYLLEPNAERHL 242 Query: 241 RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTG-DMSTEDYLVKRAKEG 299 +S EM LF EA+ +T +I + C ++ Y P P + +++L+ A +G Sbjct: 243 KSPSEMVRLFHGFKEAIEHTQKIVEACQFSLDELRYEYPDEPVPRGKTPQEHLIDIAWKG 302 Query: 300 LEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVG 359 E R P++ + L EL +I ++ YFL V + ++W+++ + Sbjct: 303 AEWRYPEGVPEK---------VQKSLNYELGLIGELHVAQYFLTVHDIVKWAREQEIL-C 352 Query: 360 PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVA 419 GRGS A S V Y L IT +DP DLLF+RFL+ ER PD DVDF E+R++VI++V Sbjct: 353 QGRGSAANSAVCYCLGITSVDPKVNDLLFDRFLSRERKEPPDIDVDFEHERREEVIQYVY 412 Query: 420 DMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEP 479 + YGR + T + ++ +R+V + G ++K G T++ E Sbjct: 413 ERYGRHRAALTATVISYRPRSAVREVCKAFGLSEDVATALAKTNWGAYGKTISDKQAGES 472 Query: 480 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 539 L +E ++ ++ R+L G R+ +H GG V+ + + P+ + Sbjct: 473 GLD---PRNETIQRVLHFTRQLIGFPRHLSQHVGGFVLTQGPLVETVPIGNAAMDERTFI 529 Query: 540 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 599 ++DK D++ G++K D L L L+ I +M+ + ++A +P DD +DM Sbjct: 530 EWDKDDIDALGIMKVDILALGMLSCIRKCFDMLRLYKGLEY----NLATVPQDDPAVYDM 585 Query: 600 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 659 L ++++ VFQ+ESR ++ RL+P F D++ VA+ RPGP+Q MV ++ R+ E Sbjct: 586 LCKADSVGVFQVESRAQMSMLPRLRPRVFYDLVIEVAIVRPGPIQGDMVHPYLRRRKRIE 645 Query: 660 EISYPDVQWQH---ESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMG-KK 715 + YP +H + L+ +L+ T G+ L+QEQ MQ+A + +T A+ LR+AM + Sbjct: 646 TVRYPSPAPEHGPPDELENILKRTLGVPLFQEQAMQVAIDAAKFTPDEANGLRKAMATFR 705 Query: 716 KPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 775 + M F G G + A F+ V+ F YGF +SH+A++AL+ Y + WLK Sbjct: 706 RNGTMGLYEDKFINGLTNRGYKPDFAQACFNQVKGFGDYGFPESHAASFALLVYVSSWLK 765 Query: 776 AHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN--DDG--EI 831 H+P F AA++ + LV + +++ PPD+N + + +DG + Sbjct: 766 CHHPEVFCAAILNSQPMGFYAPAQLVRDAREHDVEVRPPDVNYSDWDSLLEPKEDGTFAV 825 Query: 832 VYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRL 891 G+ I+G+ E I+ +++ R G Y E+ L RT L R LE+L + AF + Sbjct: 826 RLGLRQIEGLSETHIQTLMDRRQDGYYTPEI--LRQRTG---LPRGALERLAAADAFRSM 880 Query: 892 GPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLD 951 G R + A++ Q A +E +F A + EQ ++ P + Sbjct: 881 GLDRREALW----AIRGQTQEAPSE------LFACSATK-EQGREAEVKLPEMPMSEHVI 929 Query: 952 GERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRG 1011 + L L HP++ +L+E +G K+++ G + G+V+ + T G Sbjct: 930 QDYHATRLSLKAHPVS-FLRERYSRMGIRTTKEIYELRSGSRVMVGGVVLVRQRPGTASG 988 Query: 1012 NRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVM 1071 + TL+D +G ++++ +++++ ++ ++ V G+V D + A E++ Sbjct: 989 --VVFVTLEDETGVANLIVWPKVMERFRPIVMGAYLIAVKGRVQTAD--NVTHILAEEII 1044 Query: 1072 D 1072 D Sbjct: 1045 D 1045 >UniRef50_Q9RX08 DNA polymerase III subunit alpha n=2 Tax=Deinococcus RepID=DPO3A_DEIRA Length = 1335 Score = 907 bits (2344), Expect = 0.0, Method: Composition-based stats. Identities = 351/874 (40%), Positives = 521/874 (59%), Gaps = 32/874 (3%) Query: 306 FLFPDEEERLKRRPEYD------ERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVG 359 L PD ++ R + R E EL VIN MGFP YFLIV ++I W+KD+ + VG Sbjct: 449 ELDPDTDDEETTRSHHRYALKLLRRAEYELSVINNMGFPDYFLIVADYINWAKDHDISVG 508 Query: 360 PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVA 419 PGRGSGAGSLVAYA++IT+LDPLEF+LLFERFLNP+R+SMPDFD+DF +R +VI +V Sbjct: 509 PGRGSGAGSLVAYAIRITNLDPLEFELLFERFLNPDRISMPDFDIDFNDARRTEVIGYVQ 568 Query: 420 DMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGM--TLAKAFEA 477 + YG D V+QI TFGTMA+KA ++DV RV+G Y VD++SKLIP G +L +A EA Sbjct: 569 EKYGTDKVAQIATFGTMASKACLKDVARVMGLEYAKVDKVSKLIPIKFGKSYSLEQAREA 628 Query: 478 EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHP 537 P + ++ D ++ + A+KLEG+TR+A HA GVVI ++T+ P+ D G+ Sbjct: 629 VPDIQQMLAEDAQLLEAYEFAQKLEGLTRHASVHAAGVVIGREELTNLVPVMRDTSGEGQ 688 Query: 538 VTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSF 597 V Q+D VE GL+K DFLGLRTL+ ++ A ++ + E D IP DD+K++ Sbjct: 689 VCQYDMKSVEDIGLIKMDFLGLRTLSFLDEAKRILRESGTDFEEKYGDFDHIPFDDEKTY 748 Query: 598 DMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHG 657 +++ R +T VFQLE G+ D +RL+P D+IAL AL+RPGP+++ + ++ R HG Sbjct: 749 ELMSRGDTKGVFQLEGAGIADASRRLKPRRLADIIALSALYRPGPMEN--IPTYVRRHHG 806 Query: 658 REEISYPDVQWQH--ESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKK 715 EE+ Y + + + L+ +L+ TYGI +YQEQ+MQIA ++GY+LGGAD+LRRAMGKK Sbjct: 807 IEEVDYDKDGFPNSKQWLEKILQETYGIPVYQEQIMQIASEVAGYSLGGADLLRRAMGKK 866 Query: 716 KPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 775 EEM +QR +F GA++ G+ + K+FD+++ FA YGFNKSHSAAY +++YQT WLK Sbjct: 867 DAEEMKRQRQLFVVGAKEKGVPEDEGNKLFDMLDAFANYGFNKSHSAAYGVITYQTAWLK 926 Query: 776 AHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGI 835 A+YP +FMAA++T + +++KV V + +M L +LPPDIN F V + EI++G+ Sbjct: 927 ANYPVQFMAALLTVERRDSDKVAEYVSDARKMDLHVLPPDINRSSSDFAVAGE-EILFGL 985 Query: 836 GAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHR 895 AIKG+GE + I+E R K G F+ L D C+R K NR+ LE LI SGAFD G R Sbjct: 986 YAIKGLGESAVLRILEEREKAGAFKSLADFCSRLGNKVCNRKALESLIKSGAFDAFGE-R 1044 Query: 896 AALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSY-ASCQPWPEQVVLDGER 954 L+ SL DAL+ A A+ A Q+ M + E + E+ +S P+ + L E+ Sbjct: 1045 HQLIESLEDALEDAAGTAEINARAQSGMSMMFGMEEVKKERPLRSSIAPYSDLERLAIEK 1104 Query: 955 ETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPT--------ERGKVITAAGLVVAARVM 1006 E LGLY++GHP+ Q+ E R R+ D+ + + AG++ Sbjct: 1105 EALGLYISGHPLEQH--EGLREAASCRVSDLDAWFALQNVAPGKRQKAVLAGMIEGVVKK 1162 Query: 1007 VTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMT 1066 TK G + L D SG++E++ F+ A D+ + L D +V ++ +D GGL+ Sbjct: 1163 PTKSGGMMARFILADESGQMELVAFSRAYDRIEPKLVNDTPALVIVELEAED--GGLRAI 1220 Query: 1067 AREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARA 1126 A E++ I++ E + + +++ L + L+ + +G++P +L + + Sbjct: 1221 AEEIVSIEQLSE-VPKVMYVTIDLETASPDALGDFQSVLDEY-AGSMPTYLRLETPEQFV 1278 Query: 1127 RLRFGATWRVSPSDRLLNDLRGLIGSEQVELEFD 1160 + S + L L +D Sbjct: 1279 VYQLDHGMG---SPEAIRALNQTFAWADAHLAYD 1309 Score = 309 bits (791), Expect = 6e-82, Method: Composition-based stats. Identities = 110/348 (31%), Positives = 163/348 (46%), Gaps = 28/348 (8%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAAL----GMPALAITDFTNLCGLVKFYGAGHGA 60 +F HL H+ YS++DG AK L+K A + PALA+TD N+ G V FY G Sbjct: 23 KFAHLHQHTQYSLLDGAAKLKDLLKWAKEVTPEGQTPALAMTDHGNMHGAVHFYNYAMGM 82 Query: 61 GIKPIVGADFNV-----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109 +KPI+G + V + + HLT+LA + GYQNL L S+ Y GY Sbjct: 83 EVKPIIGYEAYVVPGFGTRRDRSRAQDGEKGIFHLTLLARDFEGYQNLCRLSSRGYTEGY 142 Query: 110 GAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLE 169 P ID + L E ++G+I SG +V + L++G + +Y E F D YF+E Sbjct: 143 -YYKPRIDHELLQEHHKGIIAFSGCLGSEVQQLLMQGREDDARARLLWYRELFGDNYFIE 201 Query: 170 LIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPK 229 + G P+++ A+ G+ +VATND ++ SD AHE +AI TL D Sbjct: 202 IQDHGLPEQKKNNPILKAWAQELGIGMVATNDGHYVKKSDATAHETLLAIQTKATLADEN 261 Query: 230 RPRNYSPQQYMRSEEEMCELFA---DIPEALANTVEIAKRCNVTVRLGE---YFLPQFPT 283 R + + Y+++ EEM E NT IA+ CNV + +G+ Y +PQ P Sbjct: 262 RFKFPCDEFYVKNLEEMQRALPVSEWGEEPFDNTAHIAELCNVELPVGKKRQYQMPQLPI 321 Query: 284 GDM-STEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQ 330 + S + L + G +R + R +Y R EL Sbjct: 322 PEGRSMAEELRVQTYAGAVKRYPAHLTEGLLR-----DYAARSLAELG 364 >UniRef50_Q1YPP6 DNA polymerase III, alpha subunit, putative n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YPP6_9GAMM Length = 1048 Score = 904 bits (2337), Expect = 0.0, Method: Composition-based stats. Identities = 288/1113 (25%), Positives = 505/1113 (45%), Gaps = 98/1113 (8%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS + L S+++ + G + LVK+A+ L A+AITD +L G+VK + A Sbjct: 1 MS---YAELHCISNFTFLRGASHPHELVKRASDLNYSAIAITDECSLAGVVKAHVAAIDH 57 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 K I+G++F + + L LA N Y L+ LI+ A +RG + + D Sbjct: 58 DFKLIIGSEFRL-------DGHKLIALAPNRQAYSELSALITLARRRGDKGSYQLDWNDL 110 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 180 L L++ + DV + F DR ++ + + + Sbjct: 111 EGNLRNALLIWLPSQQLDVDH-----------QRGEQLSNWFKDRLWVGITHLLSGHDAN 159 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 + LA LP+VA DV + AIH ++ + R + ++++ Sbjct: 160 DYYYYRNLAAMWQLPMVACGDVHMHSRQRQPLQDTLTAIHHNCSVMQLGQRRFANSERHL 219 Query: 241 RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKRAKEG 299 R ++ +L+ L T+ IAKRC+ ++ Y P + + + L ++G Sbjct: 220 RGLNQLQKLYPGA--LLRETLNIAKRCHFSLEELRYEYPSEVVPEHLTATEQLRFLVEQG 277 Query: 300 LEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVG 359 + +R +++E ELQVI ++ + YFL V + + +++ + Sbjct: 278 VAKRWPNGI---------SQSIRKQIEYELQVIAELNYESYFLTVEDIVAFARSRNIL-C 327 Query: 360 PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVA 419 GRGS A S+V Y L IT++ P + LLFERF++ ER PD DVDF ++R++VI+++ Sbjct: 328 QGRGSAANSVVCYCLFITEVAPDQISLLFERFISRERNEPPDIDVDFEHQRREEVIQYIY 387 Query: 420 DMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP------------ 467 YGR + T + ++ +RDVG+ LG F++++S+ + Sbjct: 388 QKYGRQRAALAATVISYRPRSAVRDVGKALGLDALFIEQLSQSMSWWDRQADLQALFQQQ 447 Query: 468 -GMTLAKAFEAEPQLPEIYEADEEVK---ALIDMARKLEGVTRNAGKHAGGVVIAPTKIT 523 G K E + Q + E + + + + ++ G R+ +H GG +I + I+ Sbjct: 448 GGSQEKKNQEKKNQEKKNQEENSQGQIATHFFKLLNEILGFPRHLSQHVGGFIITKSPIS 507 Query: 524 DFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPP 583 P+ + V Q+DK D+E GL+K D L L L+ ++ ++I++ + N Sbjct: 508 TLVPVVNASMAERTVIQWDKYDIEALGLLKIDVLALGMLSAVHRCFDLISQHQQIN---- 563 Query: 584 LDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPL 643 L + +IP DD ++DML +++ VFQ+ESR ++ RL+P CF D++ +A+ RPGP+ Sbjct: 564 LTMQSIPKDDPATYDMLCTADSVGVFQIESRAQMAMLPRLKPRCFYDLVIEIAIVRPGPI 623 Query: 644 QSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLG 703 Q GMV ++ R+ G E + YP + +K VLE T GI ++QEQV+++A V +G++ G Sbjct: 624 QGGMVHPYLRRRQGLETVDYPS-----QEIKSVLERTLGIPVFQEQVIRLAMVAAGFSGG 678 Query: 704 GADMLRRAM------GKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFN 757 AD LRRAM G K +A+ +G G + + A ++F ++ F YGF Sbjct: 679 QADQLRRAMASSGKSGSGKNSTLAQFEQKLTDGMMARGYSLDFAERLFKQIQGFGVYGFP 738 Query: 758 KSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDIN 817 +SHSA++AL++Y + WLK H+PA F A++ + L+ + R ++I P D+ Sbjct: 739 ESHSASFALLAYVSAWLKCHHPAAFCCALLNSQPMGFYTPSQLLQDAQRHQIEIRPIDVC 798 Query: 818 SGLYHFHVND---------DGEIVYGIGAIKGVGEGPIEAIIEARNKGGY-FRELFDLCA 867 + + + I G+ IKG E I+ AR+ F L L Sbjct: 799 HSDWEHSLEMGSLEAGSSTEPAIRLGLCLIKGFSYRAAERIVLARSNSQQGFNSLPQLSR 858 Query: 868 RTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVL 927 + + L L +GA L +R DAL D E ++ + Sbjct: 859 AAGLSQAD---LALLSSAGALRSLTSNRRQAHW---DALAIEDYRPLLEPAQNSESLPAI 912 Query: 928 AEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHP 987 P E L+ + + G+ L HP+ ++ + R D+ Sbjct: 913 LSTP-------------SEIEELNADYSSTGVSLGRHPMEILREQSKTLQRCKRTIDLPT 959 Query: 988 TERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRI 1047 + + AGLV + T G + TL+D +G ++++T ++ ++ L K + Sbjct: 960 LGNRRFVRIAGLVTGRQRPGTASG--VIFLTLEDETGNSNIVVWTTVQERCREALLKGSL 1017 Query: 1048 LIVSGQVSFDDFSGGLKMTAREVMDIDEAREKY 1080 L+V G V D + + A+E+ D + Sbjct: 1018 LMVKGVVETD--GNVVHVIAQELTDCSSLMAEL 1048 >UniRef50_B9E7A8 DNA polymerase III alpha chain n=1 Tax=Macrococcus caseolyticus JCSC5402 RepID=B9E7A8_MACCJ Length = 1051 Score = 898 bits (2321), Expect = 0.0, Method: Composition-based stats. Identities = 350/1085 (32%), Positives = 564/1085 (51%), Gaps = 92/1085 (8%) Query: 7 VHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIV 66 VHL VHS Y ++ + LV + L A+A+TDF L G+ FY A A IKPI+ Sbjct: 6 VHLNVHSAYDLLHSTVEIDALVTRVTELKEHAVALTDFNVLFGVQSFYKACIAADIKPII 65 Query: 67 GADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNE 126 G + C G + LA NNTGY NL L S+ +G + WL + Sbjct: 66 GMEI---CVTDGLKQLRAVCLARNNTGYVNLIKLSSRIQLKG----VELTPLKWLSQYQS 118 Query: 127 GLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAV 186 G+I+ + +S+ S ++Y + D + Sbjct: 119 GIIV--------IFKSITESESHFTQGIESYY-----------ICHNSSLDAKK------ 153 Query: 187 ELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEM 246 V DV +++SS E+ AI + L + R + YM+ + ++ Sbjct: 154 ----------VYIEDVLYLESSGVQHLEVLNAIEENKKLP-LEMVRIKAGTAYMKDDVQL 202 Query: 247 CELFADIP-EALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKEGLEERLA 305 +L IP E L T EIA +CNV + +P+FP S++ YL+K +E E Sbjct: 203 IDL--KIPQEYLDRTHEIADQCNVDITKHHATMPKFPVEGYSSDAYLMKLLQEKKRE--- 257 Query: 306 FLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSG 365 P +ER Y++RL E VI QMG+ YFLIV + IQ++K++ + VGPGRGS Sbjct: 258 --IPHFDER------YEQRLRYEYDVITQMGYADYFLIVGDLIQYAKEHDILVGPGRGSS 309 Query: 366 AGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRD 425 GSL++Y L IT++DP++++LLFERFLNPERV+MPD D+DF KRDQVI++ D YG+ Sbjct: 310 GGSLISYVLGITEVDPVQYNLLFERFLNPERVTMPDIDIDFEDTKRDQVIQYAVDKYGKY 369 Query: 426 AVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIY 485 VS I+TFG + A+AV+RD GR+L + +IS LIP G+TL + + Sbjct: 370 NVSGIVTFGHLNARAVMRDTGRILQFSDAELKKISTLIPKRVGITLDD-MKMDEDFMRFI 428 Query: 486 EADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSD 545 D+ K D+A LEG+ RN HA GV+I +TD+ P+ + +TQ+ ++ Sbjct: 429 NEDDRRKQWFDIAYALEGLPRNTSTHAAGVIIHDQLLTDYVPIIEGDS--VSLTQWTMTE 486 Query: 546 VEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSET 605 VE GL+K DFLGLR L+II ++ + LD+ +PLDD K + +L + +T Sbjct: 487 VESIGLLKIDFLGLRNLSIIRNVMDQVR----IQFNQQLDLNTLPLDDPKVYTLLAQGDT 542 Query: 606 TAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPD 665 T +FQLES G++++++ L+P F D++A++AL+RPGP++ + +I+R+HG + + Y Sbjct: 543 TGIFQLESEGIRNVLRNLKPSHFNDIVAVLALYRPGPMEQ--IPVYIERRHGAQSVDY-- 598 Query: 666 VQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRS 725 H+ LK +L+ T+G+I+YQEQ+MQIA +G++ G AD+LRRAM KK + ++ Sbjct: 599 ---IHDDLKAILKDTFGVIIYQEQIMQIANQFAGFSYGEADILRRAMSKKDMSVLLTEKE 655 Query: 726 VFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAA 785 F G+ G + + A I++L+ KFA YGF K+H+ AYA ++Y L+LK HYP F A Sbjct: 656 HFILGSVNKGYDKQTAEAIYELILKFANYGFPKAHAVAYAKIAYYMLYLKVHYPNIFYTA 715 Query: 786 VMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGP 845 +++ + + K ++DE + G+ I DIN +++ DG I+ +G IKG+G Sbjct: 716 ILSNQIGSEHKTKEIIDEVKKRGIPIYAADINKAHWYYRTYKDG-ILNALGVIKGLGYKS 774 Query: 846 IEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDA 905 ++ II+AR + G F++++D CAR ++ ++ +LE LI +G FD G RA L+ SL Sbjct: 775 VQDIIDARKQ-GSFKDIYDFCARIPSRIASKPLLEALIHAGCFDSFGHTRATLLASLDMI 833 Query: 906 LKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHP 965 + + E+ L ++ Y + + + E+ LG YLT HP Sbjct: 834 IDVERTNEGEES--------FLESLGLNKKKDYIIHEEMSDMKKAEYEKAYLGFYLTNHP 885 Query: 966 INQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGR 1025 + K ++ + ++ + R + TK G + D + Sbjct: 886 VESRFKALQYLPLYKIAQRLNQHY------MLIFIDEVRRIRTKNGQPMAFIKGFDGTDN 939 Query: 1026 LEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKY---AR 1082 ++++ F D K++ +++ +++++G+ FD G A + ++ + AR Sbjct: 940 IDIVCFPDTYRKFETVIQSHEMIVINGK--FDSNRGKDNYIAETIETVESFMNRIYEEAR 997 Query: 1083 GLAIS 1087 + I Sbjct: 998 FIYIR 1002 >UniRef50_C5BNE0 Error-prone DNA polymerase n=4 Tax=Bacteria RepID=DNAE2_TERTT Length = 1033 Score = 896 bits (2315), Expect = 0.0, Method: Composition-based stats. Identities = 292/1092 (26%), Positives = 495/1092 (45%), Gaps = 84/1092 (7%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 + HL S+++ + G + A +V++A LG A+A+TD +L G VK + GIK I Sbjct: 3 YAHLFTFSNFTFLRGASHPAEMVEQAYRLGYDAIALTDECSLAGAVKAHVMAEECGIKLI 62 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 VG+ F + L LA + Y L+ I+ A +R D L Sbjct: 63 VGSYFKL------SNNCELIALAPDRAAYAELSGFITLARRRADKGEYTAHMDDLRFRLQ 116 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 185 LI+ L + ++ + F R +L + E+ Sbjct: 117 TCLII------------WLPTANTATEDNARIFSAAFKQRLWLGVGHQLAGGEQRLFQQW 164 Query: 186 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 245 LA LP+VA++ + ++ AI+ ++ + + Y+++ +E Sbjct: 165 QNLAATYQLPMVASHLALMHSAERKPLQDVLTAINHNTSVSQLGTRLQSNGENYLKAIDE 224 Query: 246 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKRAKEGLEERL 304 + L+ P + T+ IA+RCN ++ +Y PQ S +L G R Sbjct: 225 VFYLYP--PGLIKQTLLIAERCNFSLNELKYQYPQELVPKGLSPIAHLRALVDSGKARRW 282 Query: 305 AFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGS 364 P + E + L EL +I ++ + YFL V + + +++ + GRGS Sbjct: 283 PGGVPAQAEAI---------LAKELALIEELHYEYYFLTVYDIVAFARQQNIL-CQGRGS 332 Query: 365 GAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGR 424 A S+V Y L IT++ P + ++LFERF++ ER PD DVDF ++R+ VI+++ Y R Sbjct: 333 AANSVVCYCLFITEIAPGQINVLFERFISKERDEPPDIDVDFEHQRREDVIQYIYTKYSR 392 Query: 425 DAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISK-LIPPDPGMTLAKAFEAEPQLPE 483 + T + +++ IRDVG+ LG VD ++K L D L K EA Sbjct: 393 QRAALAATVISYRSRSAIRDVGKALGLDPALVDHLAKSLAWWDRTGDLVKRIEA----AG 448 Query: 484 IYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDK 543 + + V+ + +++ G R+ +H GG VI K++D P+ V Q+DK Sbjct: 449 VQTERQLVQQFFALVQQIIGFPRHLSQHVGGFVITQDKVSDLVPVENASMPGRTVIQWDK 508 Query: 544 SDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL-DIAAIPLDDKKSFDMLQR 602 D+E GL+K D L L LT + L M+N+ EP + +A IP +D ++DML Sbjct: 509 EDLEAMGLLKVDILALGMLTALRKTLAMVNR-----YEPAIASLADIPPEDPHTYDMLCA 563 Query: 603 SETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEIS 662 ++T VFQ+ESR ++ RL+P F D++ +A+ RPGP+Q MV ++ R+ G E +S Sbjct: 564 ADTVGVFQIESRAQMSMLPRLRPRTFYDLVIEIAIVRPGPIQGDMVHPYLRRRDGLEPVS 623 Query: 663 YPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK-KKPEEMA 721 Y + VL+PT G+ ++QEQ +++A V +G++ G AD LRRAM K + Sbjct: 624 YQS-----PDIADVLKPTLGVPIFQEQAIRLAMVAAGFSGGEADRLRRAMASWGKNGNLL 678 Query: 722 KQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAE 781 + F +G NG + A ++F+ ++ F GYGF +SHSA++A++ Y + WLK H+PA Sbjct: 679 QFEETFIQGMLNNGYELDFAHRLFEQIKGFGGYGFPESHSASFAILCYASSWLKCHHPAA 738 Query: 782 FMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDG------EIVYGI 835 F A++ + L+ + R G+ +LP D+N + I G Sbjct: 739 FYCALLNSQPMGFYSPSQLIQDARRHGIPVLPVDVNHSEAESALEPANSYRTPWAIRLGF 798 Query: 836 GAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHR 895 IKG+ + I + R + +R++ L R L+R L+KL + A L +R Sbjct: 799 TRIKGLDSEAAQRIADNRAQ-QPYRDIQQLARR---SGLSRADLQKLAAADALHSLAGNR 854 Query: 896 AALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERE 955 A QA +F E P + L + Sbjct: 855 HLAHW------------QAASVEAQAGLFD-----DEPPPGDALLTAPPSLEKDLTSDYN 897 Query: 956 TLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIG 1015 T GL L HP+ +E + + + + G+ + AGLV + T +G Sbjct: 898 TTGLSLRVHPMGILRQEYP-FSRCKQQRQLSGLSHGRFVQVAGLVTGRQRPGTAKGTL-- 954 Query: 1016 ICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFD------DFSGGLKMTARE 1069 TL+D +G + V+++ ++Y++ L ++LIV G + D + + + A + Sbjct: 955 FLTLEDETGNINVVVWKSTQERYRKALLTSKLLIVKGHLERSTPTATTDATPVIHVVAGQ 1014 Query: 1070 VMDIDEAREKYA 1081 ++D + E A Sbjct: 1015 LLDYSDRLESLA 1026 >UniRef50_A7BC77 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BC77_9ACTO Length = 1094 Score = 895 bits (2314), Expect = 0.0, Method: Composition-based stats. Identities = 333/1152 (28%), Positives = 512/1152 (44%), Gaps = 128/1152 (11%) Query: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61 +E R+ L HS ++ +DG + A +V++AA LG+ ALAI D + V+ A AG Sbjct: 3 TERRYAELHAHSAFTFLDGTDEPARMVEEAARLGLDALAILDVDGMYSTVQTTMAARTAG 62 Query: 62 IKPIVGADFNVQCDLLG------------------DELTHLTVLAANNTGYQNLTLLISK 103 + + GA+ + D L D L ++AA+ TGY +L +S Sbjct: 63 LPIVYGAELTLAPDALRGIVPGSSAPGWGLAPGAEDPGMRLPIVAASPTGYAHLVGAMSA 122 Query: 104 AYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP 163 G P D L E L++L+GGR G + R+L G +A + + F Sbjct: 123 RALSEPGQRNPRHDLVNLSEAGGELVVLTGGRRGPLMRALRAGGTAPARRVLDGLVDAFG 182 Query: 164 DRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGF 223 L + R DE+ ELA A G +VAT+ R S +I A G Sbjct: 183 CDQVLVEWQAARGDEDEVGDVLAELARASGTRLVATSGARMSSPSKQALGDILTATRLGS 242 Query: 224 TLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT 283 +L++ + +RS EM L P+AL N E+A C +RL LP+ Sbjct: 243 SLNEAEAHLGAHRSF-LRSPAEMARLHGAHPQALDNACEVAAACAFDLRLVAPRLPRTQV 301 Query: 284 GDMSTED-YLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFL 342 D T D +L EG R P E +E EL VI ++GF GYFL Sbjct: 302 PDGHTPDSWLAHCTYEGASVRYGSR--------AHHPRAWETIEHELGVIERLGFAGYFL 353 Query: 343 IVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDF 402 IV + + + NG+ GRGS A S V Y L IT +D + +LLFERFL+ R PD Sbjct: 354 IVKDIVDFCARNGIL-CQGRGSAANSAVCYCLGITAVDAVRHNLLFERFLSDARSGPPDI 412 Query: 403 DVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL 462 DVD +R++VI++V D +GRD +Q+ T ++ IRDV R LG+P G S+ Sbjct: 413 DVDIEACRREEVIQYVYDTFGRDRAAQVANVITYRPRSAIRDVARALGYPAGTATAWSQ- 471 Query: 463 IPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 E + D A+ L + R+ G H+GG+V+ + Sbjct: 472 -----------------------GRGEVPPLVGDAAQALARLPRHMGIHSGGMVLTDQPV 508 Query: 523 TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGE- 581 + P+ V Q+DK D AGLVKFD L L LT + A + + A+ GE Sbjct: 509 SRICPVGWAAMPGRTVLQWDKEDCADAGLVKFDLLSLGMLTALRVAFDELRAGGARAGEA 568 Query: 582 -----------------PPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQ 624 PL + +P +D + +D+L ++T VFQ+ESR + + RL+ Sbjct: 569 SNQLRGWAPRVVEGREGQPLGLHTLPEEDPRVYDLLCAADTVGVFQVESRAQMNTLPRLK 628 Query: 625 PDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGII 684 P CF D++ VAL RPGP+Q V+ ++ R+ GRE+++Y H+ L+P L T G+ Sbjct: 629 PRCFYDIVVEVALIRPGPIQGRSVNPYLRRRSGREKVTY-----LHQLLEPALRQTLGVP 683 Query: 685 LYQEQVMQIAQVLSGYTLGGADMLRRAMGKKK-PEEMAKQRSVFAEGAEKNGINAELAMK 743 L+QEQ+M+IA+ +G + AD LRRAMG K+ PE M + G E+ GI+A + Sbjct: 684 LFQEQLMRIARDAAGLSGARADQLRRAMGAKRSPERMEALKGDLMAGMEERGIDAPTRER 743 Query: 744 IFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDE 803 IF+ ++ FA +GF +SHS ++A + Y + WLK H P F AA++ + LV + Sbjct: 744 IFEQLKGFADFGFPESHSFSFAHIVYASSWLKVHAPEHFYAAILASQPMGFYSPATLVQD 803 Query: 804 CWRMGLKILPPDINSGLYHFHVNDDG------------------------------EIVY 833 R G++++ P +N L V G + Sbjct: 804 ARRHGVRVVGPSVNDSLVDASVQRVGDDEAGESYNPGRPEALPSRGTVALDVDRELAVRI 863 Query: 834 GIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGP 893 G+ ++G+G E I+EAR + G F DL R ++ +EKL M+GA + LG Sbjct: 864 GLSQVRGLG-AVAERIVEARRQ-GAFTSQADLARRAH---VSASAMEKLAMAGALECLGV 918 Query: 894 HRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGE 953 R A A GQ F E + E + + Sbjct: 919 GRR------EGAWAAGALAQPQARAGQWQPFLPGTE----VGARVPELPSLSEAERMRSD 968 Query: 954 RETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNR 1013 + GL HP + + +R ++ G+++ AG+V + T G Sbjct: 969 VASTGLTPGRHPFSYVRGSLPA--SVLRAGELGQHLTGRIVDIAGVVTHRQRPHT--GGG 1024 Query: 1014 IGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDI 1073 I +L+D +G + V + A K++++ + L+V G + + D G + + A + I Sbjct: 1025 ITFLSLEDETGLVNVSVSVGAWKKFRRVCLESSALLVRGTLEWGD--GAISVQAFRIASI 1082 Query: 1074 DEAREKYARGLA 1085 E +R Sbjct: 1083 ALPVEVKSRDFR 1094 >UniRef50_B1XYC3 DNA polymerase III, alpha subunit n=4 Tax=Burkholderiales RepID=B1XYC3_LEPCP Length = 1109 Score = 894 bits (2310), Expect = 0.0, Method: Composition-based stats. Identities = 291/1131 (25%), Positives = 491/1131 (43%), Gaps = 101/1131 (8%) Query: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG-- 61 P + L S++S + G + L+ +AA LG ALAITD ++ G+V+ + A Sbjct: 6 PDYAELHCRSNFSFLSGASHAEELISRAARLGYRALAITDECSVAGVVRAHEAARHPRGE 65 Query: 62 --------IKPIVGADFNVQCDLL-GDELTH----LTVLAANNTGYQNLTLLISKAYQRG 108 ++ I+G++F + G H L +L N GY L LI+ A R Sbjct: 66 RAPDDPGLLRLIIGSEFTLSPAAASGTRPPHPGGRLLLLVRNRAGYGQLCTLITLARSRC 125 Query: 109 YGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFL 168 + D+ ++ LL R D+ L + + F +R + Sbjct: 126 AKGDYRLDADDFDPAPSDCWALLLPRREDDLPTLLTQ---------ARWLVARFGERARI 176 Query: 169 ELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228 + D+ + A ++A G P+VA DV S + AI L D Sbjct: 177 AIELLQHADDNLRIAHARAASQASGAPLVAAGDVLMHVRSRKPLADTLTAIRHHLPLADC 236 Query: 229 KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLP-QFPTGDMS 287 + +Q++RS + +++ PE LA +V IA C ++ Y P + S Sbjct: 237 GHLLMRNAEQHLRSRLALAQIYR--PEWLAESVRIADACTFSLDELRYEYPDEIVPAGHS 294 Query: 288 TEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347 YL + G R P P ++E EL ++ +M + +FL V + Sbjct: 295 ASSYLRQETLAGAARRY----PPHSHPDGIPPGVLAQIEHELALVAEMRYEAFFLTVHDI 350 Query: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 ++ ++ G+ GRGS A S V Y L IT++DP + LLFERF++ ER PD DVDF Sbjct: 351 VRQARRLGIL-CQGRGSAANSAVCYCLGITEVDPTQTTLLFERFISRERGEPPDIDVDFE 409 Query: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467 E+R+++I+++ YGR + T + +RDVGR G +D ++K Sbjct: 410 HERREEIIQYIYAKYGRHRTALAAAVSTYRVRGALRDVGRAFGLDELLIDAVAKSYQWFD 469 Query: 468 GMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAP 527 G A + + +++A L G R+ +H+GG VIA ++ P Sbjct: 470 GRG---ALSERLAEQGLDAESPVTQQWLELATTLMGFPRHLSQHSGGFVIARESLSQLVP 526 Query: 528 LYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGE------ 581 + + Q+DK D+E GL+K D L L LT++ +L++ N + + Sbjct: 527 IEPAAMDGRQIIQWDKDDLESLGLLKVDVLALGMLTVLRKSLDLANAWHGRTAQAWRGGS 586 Query: 582 -------------PPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCF 628 P + IP DD ++ M+++++T +FQ+ESR + ++ RL+PD F Sbjct: 587 GSFSHRAPQRPEREPWTLHHIPRDDPATYAMIRKADTVGMFQIESRAQQSMLPRLRPDKF 646 Query: 629 EDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQE 688 D++ VA+ RPGP+Q GMV ++ RK G+E P + +L L T G+ ++QE Sbjct: 647 YDLVIEVAIVRPGPIQGGMVHPYLRRKQGKERADSP-----YPALDAALARTLGVPIFQE 701 Query: 689 QVMQIAQVLSGYTLGGADMLRRAMGK-KKPEEMAKQRSVFAEGAEKNGINAELAMKIFDL 747 QVMQ+ + +G++ G AD LRRAM ++ + G + G A IF Sbjct: 702 QVMQVCMIAAGFSPGEADGLRRAMAAWRRKGGVHHFHERIVGGMVERGYERAFAEGIFRQ 761 Query: 748 VEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRM 807 ++ F YGF +SH+ ++A++++ + WLK H PA F+AA++ + LV + R Sbjct: 762 IQGFGEYGFPESHAYSFAILAWFSAWLKCHEPAAFLAALLNSQPMGFYGPAQLVADARRH 821 Query: 808 GLKILPPDINSGLYHFHVN------------------------DDGEIVYGIGAIKGVGE 843 +++ P D+ + + + G+ + G+ + Sbjct: 822 QVEVRPVDVTRSDWDCTLEAPSPAAAAPATDPPASARPPGSGAGGPAVRLGLRQVGGLSQ 881 Query: 844 GPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLG 903 E +++AR + F ++ DL R + L + L HR + + Sbjct: 882 ASAERLLQARREA-AFIDVHDLARRAALDPHELQTLARADAL---AALAGHRRQQVWA-- 935 Query: 904 DALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTG 963 AA A G G+L + P + Q P E V LD GL L Sbjct: 936 ----AAAPPAAPLTTGTGPGAGLLQDAPIREPQLSLIEAPEGEAVTLD--YAATGLSLRR 989 Query: 964 HPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRS 1023 HP L+E R ++ G+V+ A GLVV+ + T G TL+D + Sbjct: 990 HP-LALLRERLRRQAVKSAAELARVPDGRVVRACGLVVSRQQPGTAHGT--VFVTLEDET 1046 Query: 1024 GRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDID 1074 G + ++++ D ++Y++ L + R+L V G D G + A ++ DI Sbjct: 1047 GVVNLIVWQDVRERYRRALLESRLLAVRGTWQQRD--GVAHLLAHDLFDIS 1095 >UniRef50_C8NZJ2 DNA polymerase III subunit alpha n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZJ2_ERYRH Length = 1030 Score = 893 bits (2309), Expect = 0.0, Method: Composition-based stats. Identities = 342/1050 (32%), Positives = 556/1050 (52%), Gaps = 54/1050 (5%) Query: 7 VHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIV 66 HL V S YS++ G+ + +KA ++A+TD L G + FY A IKPI Sbjct: 12 THLMVRSHYSLLKGMMPVELICEKAKHNESKSIALTDRHVLFGALDFYDAARKHHIKPIY 71 Query: 67 GADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNE 126 G + + L + VLA N GYQ L L ++ Y + ++ + Sbjct: 72 GMEITI---LEDESYYDSLVLARTNEGYQGLIHLSYLLSKQAYISEADVVPFE------S 122 Query: 127 GLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAV 186 LI ++ G + +L N V + ++ F +++ L + Sbjct: 123 ELIFIAYSEQGPFEKGMLSKNLDEVANTMERLKKMFS-YFYIGLSHQESGFFSNVNDQLR 181 Query: 187 ELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEM 246 ++A R + VA V + + D +A AI L+D + SP + S+++ Sbjct: 182 QMAVLREIECVALPKVYYENKDDEEAFRALQAIDKSTYLED--KTLVSSPNRNFISDDDF 239 Query: 247 CELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGLEERLA 305 L+ + +L +T+ A+ CNV++ + LP+F T ++S + +L + + GL+ RL Sbjct: 240 KVLYTEAELSLTDTI--AEMCNVSIMNLKTELPEFETHQEVSNKVFLEQLSHFGLKRRLN 297 Query: 306 FLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSG 365 P++ Y ERL EL++IN+M F YFLIV + I+++K G+ VGPGRGS Sbjct: 298 NSVPEK---------YRERLNYELKIINEMNFTDYFLIVYDVIRYAKKAGIYVGPGRGSS 348 Query: 366 AGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRD 425 AGSLVAY L I ++DP+E+DLLFERFLNPERVSMPD D+DF +KR VI++V + YG D Sbjct: 349 AGSLVAYCLGIVEIDPIEYDLLFERFLNPERVSMPDIDIDFPDDKRQYVIDYVRNKYGDD 408 Query: 426 AVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIY 485 V+ I+TFGT+ A+ RD RVL P VD++SKLI DP M L + + + Sbjct: 409 YVAHIVTFGTLKARQAFRDTARVLQVPIRKVDQVSKLI--DPMMGLRDNYNKNSRFKSLI 466 Query: 486 EADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSD 545 ++++ +K ++A K+EG+ R+ HA G+V++ + P+ + + Q++ S Sbjct: 467 QSEDLLKKTFELACKIEGMPRHTSTHAAGIVLSKKPLDVVVPV-IQLDSETKAVQYEMSH 525 Query: 546 VEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSET 605 +E GLVK DFLGLR LTII+ IN+ A DI +IPLDD+K+++++ R+ET Sbjct: 526 LESIGLVKIDFLGLRNLTIIDNISRQINESEA------FDIMSIPLDDQKTYELISRAET 579 Query: 606 TAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPD 665 VFQLES GMK L+K+++P F D++ VALFRPGP+++ + +++ + E++ Y Sbjct: 580 VGVFQLESDGMKALLKKVKPHKFSDIVDTVALFRPGPMEN--IPLYLENRDHPEKVKY-- 635 Query: 666 VQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRS 725 H+ LK + E T GI++YQEQ+MQ+AQ+++G++L AD+LR+AMGKK +E+ ++ Sbjct: 636 ---IHDDLKRITESTNGILIYQEQIMQVAQIMAGFSLARADILRKAMGKKNAKELDGLKT 692 Query: 726 VFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAA 785 F +G G A ++F L+ KFA YGFNKSHS AY L++YQ +LKA+YP F Sbjct: 693 EFIQGCIDKGHKETFAEELFSLIYKFANYGFNKSHSVAYGLIAYQLSYLKANYPHLFYTY 752 Query: 786 VMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGP 845 ++T+ + + K +DEC R + + P ++ + + I IKG+ + Sbjct: 753 LLTSVIGSEVKTRQYIDECRRRKVDLRPVNLEQSRNSYTLEG-YAIRLPFTVIKGISKSI 811 Query: 846 IEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDA 905 I + G + ++ +R + + + E LI +GAFD L R +++ SL +A Sbjct: 812 GTKIQNEVHDNGPYLNYYNAISRLNLVGIKKNQFELLIQAGAFDYLNSDRLSMIASLEEA 871 Query: 906 LKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHP 965 L+ A+ E GQ+ + L EP + + VL+ E LG Y + HP Sbjct: 872 LRYANIIRV-EKDGQSSLNMDLISEP------IFTVVSENRRQVLNDELVVLGFYFSEHP 924 Query: 966 INQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGR 1025 +++ L ++ R K +V ++ TK+G+++ L D +G Sbjct: 925 ----TLRLKKKHESDSLIEVKV--RDKYFRIIAMVDRIKLHRTKKGDQMAFIQLSDDTGL 978 Query: 1026 LEVMLFTDALDKYQQLLEKDRILIVSGQVS 1055 ++ ++F DK + LE +++V GQ+ Sbjct: 979 IDGVVFPSVYDKIKVNLEIGALVLVKGQMR 1008 >UniRef50_B5JLP8 DNA polymerase III, alpha subunit subfamily, putative n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JLP8_9BACT Length = 1088 Score = 891 bits (2304), Expect = 0.0, Method: Composition-based stats. Identities = 297/1130 (26%), Positives = 508/1130 (44%), Gaps = 121/1130 (10%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 +V L S +S + G ++ L + A G+ A+A+ D G +F+ A G+K I Sbjct: 4 YVELHGRSAFSFLRGASQPDELAEACADRGVAAMAVCDRGGFYGSARFHAACREMGVKGI 63 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 VG + + + + L V+ GYQ+L +++ + G + L+ Sbjct: 64 VGCELPMV------DGSALPVVVKTRAGYQSLCRILTDMHLSAAKGEG-RLAWGDLVGRT 116 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRTGRPDEESYLHA 184 EGL+ L+G G + R G+ + + VA + F F+EL R EE + Sbjct: 117 EGLVALTGDEDGVLRRYWDLGDRDGMRDRVAELKGLFGAGNVFVELQRRHERGEERLVSG 176 Query: 185 AVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEE 244 +LAEA G+ +VATN V + + ++ + + +LD + + Q+++++ Sbjct: 177 LRDLAEAEGVSMVATNGVSYARPAGRALMDVFTCLREKVSLDGAGALLSRNGQRFVKAPA 236 Query: 245 EMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTED-YLVKRAKEGLEER 303 EM LF DIPEA+ NT+ IA++ + Y P + + D +L K G +R Sbjct: 237 EMRHLFRDIPEAVDNTLRIAEQVEFGLENLGYEFPSYGVPRGESMDTFLKKVVWAGARKR 296 Query: 304 LAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRG 363 ++ R ++E EL VI ++GF GYFLIV + + + +DNG+ + GRG Sbjct: 297 FKGEPNEKTRR---------QMEHELAVIAKLGFSGYFLIVWDLVNFCRDNGI-MAQGRG 346 Query: 364 SGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF-CMEKRDQVIEHVADMY 422 S A S+V + L+IT +DP+ LLFERFLN ER S PD D+D E+R+ VI+ V Y Sbjct: 347 SAANSVVCFCLEITPVDPVGAGLLFERFLNEERRSWPDIDIDLPSGERREMVIQEVYRRY 406 Query: 423 GRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP---DPGMTLAKAFEAEP 479 GR + T K+ R++G+VLG + R S L + G+ LA E Sbjct: 407 GRHGAAMTANVITYRRKSAAREIGKVLGFDEEVLGRFSSLFGGHNYEHGVELADQLEKS- 465 Query: 480 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 539 + + +AL + ++ G+ R+ G+H+GG+VI + PL V Sbjct: 466 ---GVTKEHPRARALAKLCEQVLGLPRHLGQHSGGMVICQGALDTVVPLEPASMPGRSVC 522 Query: 540 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 599 Q+DK+D E G+VK D LGL + ++ +E +N +++A IP DD +F+M Sbjct: 523 QWDKNDCEDLGIVKVDLLGLGMMAVMQDTIETLN-----TKGVDIELATIPKDDVVTFEM 577 Query: 600 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 659 +QR++T VFQ+ESR + R++P F D++ V + RPGP+Q MV +++R+ Sbjct: 578 MQRADTVGVFQIESRAQIATLPRMKPKTFYDVVVEVGIIRPGPIQGKMVHPYLERREDPS 637 Query: 660 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKK--KP 717 +I Y D L+ VLE T G+ L+QEQ++++A V++ ++ A+ LRRA+ Sbjct: 638 KIEYID-----PRLEEVLERTLGVPLFQEQILKVAMVMADFSGAEAEELRRAVSTFSTNE 692 Query: 718 EEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAH 777 + M K + G+ + V FA YGF +SH+ ++ L++Y + +LK H Sbjct: 693 KRMNKVLGKLVGAMRERGVEETKVEDVVRAVSSFAHYGFPESHAISFGLLAYASTYLKCH 752 Query: 778 YPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHF--------HVNDDG 829 Y AEF ++ L+ + RMG+++LP + + V G Sbjct: 753 YAAEFFVGLLNNQPMGFYAPATLIQDAKRMGIRVLPVCVVESRWECGAAGAAWEKVEGGG 812 Query: 830 ----------------------------------------------EIVYGIGAIKGVGE 843 EI G+ +KG+ Sbjct: 813 MKDEVDRVEGVMATKRHEEARRGDGDLMATKRHEKARKCEGGDRVGEIRLGLVMVKGLSR 872 Query: 844 GPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLG 903 +A++ R + G FR L D RT + N+ L L GA + R + + + Sbjct: 873 ERGKALVAERER-GAFRSLKDFRFRT---RFNKEELRMLASIGALNCFCGDRRSALWEVE 928 Query: 904 DALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTG 963 L + D+F + E E++ + + L + +G+ + Sbjct: 929 TLLD------------EDDLFAFVEE-----EEALSPLEVMTHLERLQADYAGVGVTVGK 971 Query: 964 HPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRS 1023 HP+ ++ G R D+ T G + AG V+ + T +G +L+D + Sbjct: 972 HPMASLRGQLG---GVRRACDLDTTSNGSRVKVAGQVICRQRPGTAKG--FVFISLEDET 1026 Query: 1024 GRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDI 1073 G V++ +K + + +++ LI+SG + G + A + + Sbjct: 1027 GISNVIVVPKLFEKSRLTITQEKFLIISGVLQ--RAKGVTHVKADRIEAL 1074 >UniRef50_D1VJQ4 DNA polymerase III, alpha subunit n=1 Tax=Frankia sp. EuI1c RepID=D1VJQ4_9ACTO Length = 1213 Score = 890 bits (2301), Expect = 0.0, Method: Composition-based stats. Identities = 316/1183 (26%), Positives = 502/1183 (42%), Gaps = 141/1183 (11%) Query: 8 HLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVG 67 L HS +S +DG ++ LV++AA LG+ ALA+TD + G+V+F A G++ + G Sbjct: 67 ELHCHSAFSFLDGASQPEDLVEEAARLGLSALALTDHDGMYGVVRFAEAAEQVGLRTLYG 126 Query: 68 ADFNV--------------------------------QCDLLGDELTHLTVLAANNTGYQ 95 + ++ + + HL VLA GY+ Sbjct: 127 VEVSLAPGPDRPVPGPDTGEPRPGPRRPGPPGEAPAPRPGVPDPVGDHLLVLARTPEGYR 186 Query: 96 NLTLLISKAYQRGYGAAGPIIDRDWLIELNEG--LILLSGGRMGDVGRSLLRGNSALVDE 153 L+ +S A+ G P+ D L +L+G R G V +L G Sbjct: 187 RLSRAVSDAHLAGGEKGRPLTSLDVLAAAAGDGHWQILTGCRKGLVPAALAAGGLDAARV 246 Query: 154 CVAFYEEHFP-DRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDA 212 + F D +EL P + A LA+ GL VATN+V + S Sbjct: 247 ALDGLVGRFGRDNVAVELWDHAHPLDSDRNDALYGLAQEAGLTCVATNNVHYATPSAGRL 306 Query: 213 HEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVR 272 + +I +LD+ + ++RS EM + FA P A+ + +R Sbjct: 307 AAVMASIRARRSLDEMDGHLPPAGAAHLRSGAEMTDRFARYPGAVEAAARVGTESAFNLR 366 Query: 273 LGEYFLPQFPTGDMSTE-DYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQV 331 L LP FP TE +L +G R + ++L EL + Sbjct: 367 LVAPRLPDFPVPPGHTEASWLRLLTMQGAARRYGPPVRERVGGAY------DQLAHELTL 420 Query: 332 INQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERF 391 I +GFPGYFLIV + +++ + + GRGS A S V YAL IT +D + F LLFERF Sbjct: 421 IESLGFPGYFLIVHDIVEFCRREDIL-CQGRGSAANSAVCYALGITGVDAVSFGLLFERF 479 Query: 392 LNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGH 451 L PER PD D+D +R++VI++V YGRD +Q+ + +++ +RDV R LG Sbjct: 480 LAPERDGPPDIDLDIESGRREEVIQYVYGRYGRDRAAQVANVISYRSRSAVRDVARALGF 539 Query: 452 PYGFVDRISKLIPPD-----------PGMTLAKAFEAEPQLPEIYEADEEVK-----ALI 495 G D S I P A P + E + + ++ Sbjct: 540 SPGQQDAWSSGIDRWSPLPAAAPPAPPAAVPAVPAAVTPGPGQAVEPADRIGTAIPVEVV 599 Query: 496 DMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFD 555 +A +L G R+ G H+GG+VI + + P+ V Q+DK D AGLVKFD Sbjct: 600 GLAGQLLGFPRHLGIHSGGMVICDRPVAEVVPVEWARMPGRTVIQWDKDDCAVAGLVKFD 659 Query: 556 FLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRG 615 LGL L ++ A +I ++ LD+ IP +D +DML +++ VFQ+ESR Sbjct: 660 LLGLGMLGALHLAFALIRDHHGRH----LDLGEIPPEDPAVYDMLCAADSIGVFQVESRA 715 Query: 616 MKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKP 675 + RL+P F D++ VAL RPGP+Q G V +I R++ EE++YP H L+ Sbjct: 716 QMATLPRLRPRRFYDLVVEVALIRPGPIQGGSVHPYIRRRNDLEEVTYP-----HPLLER 770 Query: 676 VLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKP-EEMAKQRSVFAEGAEKN 734 L+ T GI L+QEQ+MQ+A ++G+T AD LRRAMG K+ E + + R F +G N Sbjct: 771 SLKKTLGIPLFQEQLMQMAIDVAGFTAAEADQLRRAMGAKRATERIDRLRERFYQGMATN 830 Query: 735 GINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNT 794 GI A +++ + FA +GF +SHS ++A + Y + W+K +YPA F AA++ A Sbjct: 831 GITGAAADELYTKLAAFANFGFPESHSVSFAFLVYASAWIKLYYPAAFCAALLNAQPMGF 890 Query: 795 EKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDG------------------------- 829 LV + R G+ + PD+N+ + +G Sbjct: 891 YSPQSLVADARRHGVTVHGPDLNASGAGAILTGEGRPAGLAEPVWDGEPAGEPVGDVPAP 950 Query: 830 ---------------------------EIVYGIGAIKGVGEGPIEAIIEARNKGGYFREL 862 + G+ ++ +G E I+ AR+ GG +R++ Sbjct: 951 ARIGVGAAAGQAPPNGEADGLTGPRHPAVRLGLAGVRLIGTANAERIVAARDVGGPYRDM 1010 Query: 863 FDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQAD 922 DL RT LE L +GAF G R + + G A +A + A+ Sbjct: 1011 ADLARRTGLAAA---QLEALATAGAFGCFGLARREALWAAGAAAQARPDRLEGTAL---- 1063 Query: 923 MFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRL 982 A + + G+ + +P ++ +G V Sbjct: 1064 --------VGDPAAVAAHLPGMSGAEEIVADLWATGITPSRYPTEFVRDRLDA-LGVVVA 1114 Query: 983 KDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLL 1042 + + + AG+V + T G L+D +G + V+ +++ + Sbjct: 1115 TRLARLPGDRRVVVAGVVTHRQRPATAGGT--TFLNLEDETGLVNVICSRGVWVRHRVVA 1172 Query: 1043 EKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLA 1085 LIV G++ D G + + A + + A + +R Sbjct: 1173 TSAPALIVRGRLEKAD--GVVNVIAERLERLPLAVARRSRDFR 1213 >UniRef50_P74750 Ssp dnaE intein (Fragments) n=29 Tax=Cyanobacteria RepID=DPO3A_SYNY3 Length = 1355 Score = 890 bits (2301), Expect = 0.0, Method: Composition-based stats. Identities = 329/827 (39%), Positives = 487/827 (58%), Gaps = 57/827 (6%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FV L +HSDYS++DG ++ L+ +A LGMPA+A+TD + G V+ G IKPI Sbjct: 3 FVGLHIHSDYSLLDGASQLPALIDRAIELGMPAIALTDHGVMYGAVELLKVCRGKPIKPI 62 Query: 66 VGADFNVQCDLL----GDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG----PIID 117 +G + V + H VLA NN GY+NL L + + +G +G P I+ Sbjct: 63 IGNEMYVINGDIEINKRHRRFHQVVLAKNNQGYRNLVKLTTISNLKGIQGSGIFARPCIN 122 Query: 118 RDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPD 177 ++ L + EGLI+ S G+V +++L+G+ + +Y+ F D Y+LE+ G + Sbjct: 123 KELLEQYKEGLIVTSACLGGEVPQAILKGDLDHARQVAKWYKNLFGDDYYLEIQDHGSVE 182 Query: 178 EESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQ 237 + V++A+ + +VATND FI +D +AH+ + I G + + KR R YS Sbjct: 183 DRLVNINLVKIAQELDIKIVATNDSHFISCNDVEAHDALLCIQTGKLITEEKRLR-YSGT 241 Query: 238 QYMRSEEEMCELFAD------IPEALANTVEIAKRCNVTVRLGEYFLPQFP-TGDMSTED 290 +Y++S EEM LF D I A+ANT+E+A + LGE +P +P + + E Sbjct: 242 EYLKSAEEMHLLFRDHLPDDIIETAIANTLEVADKVEAYSILGEPRIPHYPIPPNHTPET 301 Query: 291 YLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQW 350 Y+ A +GL ERL ER P Y ERLE EL+++ +MGF YFL+V ++I++ Sbjct: 302 YVEDIAWDGLLERLKC-----RERADITPVYKERLEYELRMLEKMGFCTYFLVVWDYIKY 356 Query: 351 SKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEK 410 ++D+G+PVGPGRGS AGSLVAY +KIT++DP+ L+FERFLNPER SMPD D DFC+++ Sbjct: 357 ARDHGIPVGPGRGSAAGSLVAYCMKITNIDPVHHGLIFERFLNPERKSMPDVDTDFCIDR 416 Query: 411 RDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMT 470 RD++IE+V YG D V+QIITF M +KAV++DV RVL PY D+++K+IP G Sbjct: 417 RDEMIEYVTQKYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYAESDKMAKMIPVSRGKP 476 Query: 471 LA-----KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDF 525 EPQ Y+ + VK IDMA ++EG + G HA GVVI+ + Sbjct: 477 AKLKVMISDQTPEPQFKARYDNEPWVKKWIDMAIRIEGTNKTFGVHAAGVVISSEPLDQI 536 Query: 526 APLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLD 585 PL + +G +TQ+ DVE GL+K DFLGL+ LT + A+E++ + + LD Sbjct: 537 VPLQKNNDGA-VITQYYMEDVEAMGLLKMDFLGLKNLTTLQRAVELVAETKGIE----LD 591 Query: 586 IAAIPL------------------DD-KKSFDMLQRSETTAVFQLESRGMKDLIKRLQPD 626 + +PL DD KK+ +L+ + +FQLES+GMK +++ L+P Sbjct: 592 LDDLPLQERKALQIRARTGSKKLPDDVKKTHKLLEAGDLEGIFQLESQGMKQIVRDLKPS 651 Query: 627 CFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILY 686 ED+ +++AL+RPGPL +G++ FI+RKHGREEISY QH+ L+P+L TYG+++Y Sbjct: 652 GIEDISSILALYRPGPLDAGLIPIFINRKHGREEISY-----QHKLLEPILNETYGVLVY 706 Query: 687 QEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFD 746 QEQ+M++AQ L+ Y+LG AD+LRRAMGKKK EEM K R+ F +G+ K+G+ + +A +FD Sbjct: 707 QEQIMKMAQDLADYSLGEADLLRRAMGKKKAEEMQKHRAKFVDGSTKHGVPSRIAENLFD 766 Query: 747 LVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDN 793 + KFA Y S V Y L + E +V + D + Sbjct: 767 QMVKFAEYCL--SFGTEILTVEYGPLPIGKIVSEEINCSVYSVDPEG 811 Score = 344 bits (884), Expect = 9e-93, Method: Composition-based stats. Identities = 128/417 (30%), Positives = 215/417 (51%), Gaps = 28/417 (6%) Query: 752 AGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKI 811 A FNKSHS AYA V+YQT +LKA+YP E+MAA++TA D+ EKV + C +MG+ + Sbjct: 931 AANCFNKSHSTAYAYVTYQTAYLKANYPVEYMAALLTASSDSQEKVEKYRENCQKMGITV 990 Query: 812 LPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARN--KGGYFRELFDLCART 869 PPDIN HF + I++G+ A++ +GEG IE II AR+ + F+ L D C + Sbjct: 991 EPPDINRSQRHFTPLGE-AILFGLSAVRNLGEGAIEQIITARDNSEEKRFKSLADFCTQV 1049 Query: 870 DTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVL-- 927 D + +NRR +E LIM+GAFD + +R L++ L + A + AK + GQ ++F L Sbjct: 1050 DLRVVNRRAIETLIMAGAFDGVQSNRNQLLHDLELVIAWAQKRAKEKETGQLNIFDSLTA 1109 Query: 928 ---------AEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVG 978 A + E S + Q L E+E LG Y++ HP+ + R + Sbjct: 1110 GESIKAKEAANNGFEQEPSAPPVAEFSLQEKLQLEKEHLGFYVSEHPLKSVQRS-ARLLS 1168 Query: 979 GVRLKDMHPTERGKVITAAGLVVAARVMVTKR-GNRIGICTLDDRSGRLEVMLFTDALDK 1037 + L D+ + + ++A ++VA + ++TK+ G + TL+D SG+ E ++F ++ Sbjct: 1169 PINLVDLDQYKVRQKVSAVAILVAVKKIITKKNGQPMAFLTLEDMSGQSEAVVFPSNYER 1228 Query: 1038 YQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQI-DDQ 1096 Q +L + ++ G+V D ++ ++ ++E + + + LT ++I + Sbjct: 1229 LQDVLIEGSQQMIWGKV--DRRDDQYQLIVEDLEPVEEV-----KMVMLDLTPQEIANTS 1281 Query: 1097 LLNRLRQSLEPHRS----GTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGL 1149 RL+Q L+ H IPV + +RFG + V+ + L+ L Sbjct: 1282 TQARLKQILQSHAPQKEQMKIPVVACINEGPTKHFIRFGENYWVNDYGTAVASLQEL 1338 >UniRef50_Q7WHW8 Error-prone DNA polymerase n=12 Tax=Proteobacteria RepID=DNAE2_BORBR Length = 1052 Score = 890 bits (2300), Expect = 0.0, Method: Composition-based stats. Identities = 289/1100 (26%), Positives = 499/1100 (45%), Gaps = 77/1100 (7%) Query: 1 MSE--PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGH 58 MS P + L S++S + G + LV +A LG ALA+TD +L G+V+ + Sbjct: 1 MSAILPGYAELHCQSNFSFLQGASHPEELVTRAGELGYAALALTDECSLAGVVRAHVEAR 60 Query: 59 GAGIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA------- 111 + I+G+ F +Q LT+LA N GY NL LI+ R Sbjct: 61 EQKLPLIIGSSFTLQA-GADAPPLDLTLLAQNREGYGNLAELITLGRGRAAKGQYLLTPA 119 Query: 112 --AGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLE 169 P D L + + L +L+ + + E + P R ++ Sbjct: 120 DIEAPAGDNAHLRGMPDCLAILAPPPG---------LAAERLAEQARWLAAQCPGRAWIG 170 Query: 170 LIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPK 229 L ++ + A A A GLP+VA + S H+ AI G ++ Sbjct: 171 LTLLHHCRDDLHRAAVEHAAHASGLPIVALGQAQMHRRSRKPLHDTLAAIRTGRSVGQCG 230 Query: 230 RPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLP-QFPTGDMST 288 + ++++RS + L+ +ALA T+ IA+RC ++ +Y P + + Sbjct: 231 YDLAANAERHLRSRLRLASLYP--AQALAQTLAIARRCTFSLDELQYEYPDEIVPAGHTP 288 Query: 289 EDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFI 348 YL ++ G +R P ++E EL +IN++ + YFL V + + Sbjct: 289 ASYLRQQTYLGARQRFPEG---------MTPAVAAQVEKELALINELRYEAYFLTVYDIV 339 Query: 349 QWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCM 408 +++ G+ GRGS A S V Y L IT +DP + LFERF++ ER PD DVDF Sbjct: 340 GYARSQGIL-CQGRGSAANSAVCYCLGITAVDPARGNTLFERFISKERNEPPDIDVDFEH 398 Query: 409 EKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG 468 ++R++VI+++ + YGR + + ++V+RD GR LG G +D +++ G Sbjct: 399 QRREEVIQYIYEKYGRQRAALTAVVISYRPRSVLRDTGRALGVDNGIIDAVARAHQWWDG 458 Query: 469 MTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPL 528 K + A + ++A L G R+ +H GG VI+ K++ P+ Sbjct: 459 ---KKEMLRSLAACGLDPASRVARQWAELAETLMGFPRHLSQHPGGFVISRGKLSRLVPI 515 Query: 529 YCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAA 588 V Q+DK D++ L+K D L L L+++ AL + +RR + PL + Sbjct: 516 ENAAMPGRSVVQWDKDDLDALRLLKVDVLALGMLSVLRRALALAGQRRGR----PLALHE 571 Query: 589 IPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMV 648 IP DD ++DM+ ++T VFQ+ESR ++ RL+P + D++ VA+ RPGP+Q GMV Sbjct: 572 IPPDDDATYDMICAADTIGVFQIESRAQMSMLPRLRPRQYYDLVVQVAIVRPGPIQGGMV 631 Query: 649 DNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADML 708 ++ R+ GRE+I+YP +++ L T G+ ++QEQVMQIA +G+T G AD L Sbjct: 632 HPYLRRRQGREDITYPG-----PAVRKALARTLGVPIFQEQVMQIAVDAAGFTPGEADAL 686 Query: 709 RRAMGK-KKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALV 767 RR+M ++ + K R+ G A+ A +F +E F YGF +SH+A++AL+ Sbjct: 687 RRSMAAWRRKGGVDKFRAQLVGGLLARNYTADFAQALFRQIEGFGEYGFPESHAASFALL 746 Query: 768 SYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVND 827 +Y + WLK H P F+AA++ + LV + R G+++LP D+ + + D Sbjct: 747 AYASSWLKCHEPEAFLAALLNSQPMGFYAPAQLVQDARRHGVRVLPADVLYSGWEASLQD 806 Query: 828 -----DGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKL 882 + G+ +KG+ E AI +AR + F + D+ R L R+ L+ L Sbjct: 807 APGAARPAVRLGLNLVKGLREDSARAIEQARVRR-PFADTADMARRAG---LPRQALDAL 862 Query: 883 IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942 + A L HR + ++ D L E +E + Sbjct: 863 AAADALRTLAGHRRLASWQAAASAQSRD----------------LLREAVIVETETPALP 906 Query: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVA 1002 E + + ++GL L HP+ ++ ++ ++ A G+V Sbjct: 907 APSEGQTVAADYRSVGLTLGRHPLALLRPQL-AARNFQTAAVLNTYPNRRLARACGIVTV 965 Query: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGG 1062 + T +G TL+D +G + ++ + +++ ++ L +L + G G Sbjct: 966 RQRPQTAKGT--IFVTLEDETGPINAVVRPELIERQRRELLDATLLGIYGTWQS--VDGV 1021 Query: 1063 LKMTAREVMDIDEAREKYAR 1082 + A+ ++D+ + ++ Sbjct: 1022 RHLVAQRLVDLSSLLGQLSQ 1041 >UniRef50_Q63XR8 Error-prone DNA polymerase n=34 Tax=Proteobacteria RepID=DNAE2_BURPS Length = 1072 Score = 890 bits (2299), Expect = 0.0, Method: Composition-based stats. Identities = 292/1093 (26%), Positives = 497/1093 (45%), Gaps = 67/1093 (6%) Query: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 P + L S++S + G + LV++AA G +AITD +L G + + A G+ Sbjct: 9 PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 68 Query: 64 PIVGADFNVQC------DLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIID 117 +VGA F V G L +LA N GY NL+ LIS + Sbjct: 69 LVVGAYFGVTPDDAAPGHDPGPGAFGLVLLAQNREGYGNLSELISWRRMNAPKGTY-RLT 127 Query: 118 RDWLIELNEGLILLSG---GRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTG 174 L L L G V R + ++D +A+++ F +R L L++ Sbjct: 128 PRMLAAPPRALAHLRGVPDCFAILVPTYPAR--ADVLDAQLAWFDALFGERARLGLVQLQ 185 Query: 175 RPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNY 234 R + ++ E RG+ +VA DV S + AI G + + Sbjct: 186 RALDGAHREQVRAAGERRGMHIVALGDVTMHIRSCKPLQDTMTAIRLGMPIAECGHALAP 245 Query: 235 SPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMST-EDYLV 293 + +Q++R+ + + +LF +ALA T + C+ ++ Y P T YL Sbjct: 246 NGEQHLRTRQRIAQLFP--ADALAQTCRMLDACHFSLDDLRYEYPHEIVPAGHTPTSYLA 303 Query: 294 KRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKD 353 + G R PD +R+E EL +I + + YFL V + +++++ Sbjct: 304 QETWAGARRRYPDGVPDT---------VRQRIEFELALIADLKYEPYFLTVYDIVKYARS 354 Query: 354 NGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQ 413 + GRGS A S+V Y L +T+++P + LLFERFL+ ER PD DVDF ++R++ Sbjct: 355 KDIL-CQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFLSRERGEPPDIDVDFEHQRREE 413 Query: 414 VIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI-PPDPGMTLA 472 VI+++ + YG D + T + +R+ G+ LG V+R++K D L Sbjct: 414 VIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAKEHRWFDGSRDLL 473 Query: 473 KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDE 532 F + PE+ ++ ++A +L R+ +H+GG V++ K+T P+ Sbjct: 474 ARFASVGLDPEV----PLIRTWAEIAARLLNFPRHLSQHSGGFVVSRGKLTRLVPVENAA 529 Query: 533 EGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRA--KNGEPPLDIAAIP 590 V Q+DK D+E GL+K D L L L+ ++ A +MI R P + IP Sbjct: 530 MEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDMITAWRGPPLPDGRPFRLEHIP 589 Query: 591 LDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDN 650 DD+ ++DM+ R++T VFQ+ESR ++ RL+P + D++ V++ RPGP+Q G V Sbjct: 590 QDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRGYYDLVVQVSIVRPGPIQGGAVHP 649 Query: 651 FIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRR 710 +++R+ ++ ++ + E+L+ VLE T GI ++QEQVMQIA V +G+T G AD LRR Sbjct: 650 YLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQEQVMQIAIVAAGFTPGEADALRR 709 Query: 711 AMGK-KKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSY 769 AM K+ ++ K G + G + E A +IF+ ++ F YGF +SH+A++A ++Y Sbjct: 710 AMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFEQIKGFGEYGFPESHAASFAKLAY 769 Query: 770 QTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN--- 826 + WLK H PA F+AA++ + LV + R G+ +LP D + + Sbjct: 770 ASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKRHGVTVLPIDATKSGWEASLEAQP 829 Query: 827 ------DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLE 880 + G+ ++G+GE I A G F + +L R ++ R + Sbjct: 830 GAAPPDGRPAVRLGLSLVRGLGEEAARR-IGAARAAGPFASVDELARRACLER--RDLEA 886 Query: 881 KLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYAS 940 + G R AL ++ A + A G E + Sbjct: 887 LAAANAFATLAGNRRDALWQAVAAAPERGLLAAAPIDEAVRPALGAPTEADDVF------ 940 Query: 941 CQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLV 1000 + T+GL L HP+ ++ + G++ A GLV Sbjct: 941 -----------ADYRTIGLTLNRHPVALLRPALDA-RRLSSAAALRDRRNGRLARACGLV 988 Query: 1001 VAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFS 1060 A ++ T +G + TL+D +G + V++ + L++ ++ ++L VSG + S Sbjct: 989 TARQMPGTAKG--VLFVTLEDETGCVNVIVRPELLERQRRETLDSQLLAVSGVWQCE--S 1044 Query: 1061 GGLKMTAREVMDI 1073 + A+ + D+ Sbjct: 1045 DVRHLVAQYLEDL 1057 >UniRef50_C7R3Y6 DNA polymerase III, alpha subunit n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R3Y6_JONDD Length = 1093 Score = 887 bits (2293), Expect = 0.0, Method: Composition-based stats. Identities = 299/1126 (26%), Positives = 482/1126 (42%), Gaps = 96/1126 (8%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS PR+ L HS YS +DG + A V +A LG+ ALA+T+ L V+ A Sbjct: 1 MSSPRYAELHAHSTYSFLDGASSPAEFVAEAERLGLSALALTEHNGLYSAVQVATAAKDT 60 Query: 61 GIKPIVGADFNVQCDLLGD--------ELTHLTVLAANNTGYQNLTLLISKAYQRGYGAA 112 G++ + GA+ +V + + HL VLA + GY+ L+ +S A+ G Sbjct: 61 GVRTVFGAEVSVTPADAPEPVAGHRDPQADHLVVLARDPRGYRALSHALSLAHLAGGAKG 120 Query: 113 GPIIDRDWLIELNEG-LILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLEL 170 L + + ++L+G R + R+L R E + F ++ Sbjct: 121 RTHHTYTSLADQGDDQWVILAGCRKSPILRALQRQGHDAALEVAHDLAQRFGRQNLVIDW 180 Query: 171 IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230 +R G +++ A +A+ + ++A+ + + D E+ A+ G TL D Sbjct: 181 VRRGTAYDDALGDAVERVAQEAKIALIASTNAHYAHPRDHRRAEVLSALGAGRTLADNDP 240 Query: 231 PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTED 290 R SP ++RS +M L A P ++ +A + LP +P E Sbjct: 241 WRLASPTAHLRSARDMVRLHARRPHSVDAAARLADELAFDFDVVAPRLPPYPVPAGHDES 300 Query: 291 -YLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQ 349 +L + + ++ EL +I +GF GYFLIV + ++ Sbjct: 301 TWLRHLTDNKARRVYGTRDTNHA--------AWQHIDHELSIITSLGFAGYFLIVHDIME 352 Query: 350 WSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCME 409 + + + GRGS A S V YAL IT +D + LLFERFL PER PD D+D Sbjct: 353 FCSTHNIL-AQGRGSAANSAVCYALGITAVDAVRHGLLFERFLAPERDGPPDIDIDIESG 411 Query: 410 KRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPD--- 466 +R++VI+HV YGR +Q+ T T + +RD RVLG+P G V+ SK I Sbjct: 412 RREEVIQHVYTRYGRHHAAQVATVITYRPRLAVRDAARVLGYPIGQVNAWSKTIDRSFRP 471 Query: 467 --------PGMTLAKAFEAEPQLPEIYEADEEV-KALIDMARKLEGVTRNAGKHAGGVVI 517 + Q P ++ ++ A+ D A L + R+ G H+GG+V+ Sbjct: 472 DTPPGTPTTPDHTSDLPAPTTQPPTPHDGRADLPPAVRDTASLLHNLPRHLGIHSGGMVL 531 Query: 518 APTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRA 577 +T P+ V Q+DK D AGLVKFD LGL LT + A + + A Sbjct: 532 CDRPVTHVCPVEWGTTPGRTVLQWDKEDCADAGLVKFDLLGLGMLTALRIAFDHV----A 587 Query: 578 KNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVAL 637 L + +P +D +++LQ ++T VFQ+ESR + RL+P CF D++ VAL Sbjct: 588 ATTNTALGLYTLPPEDPGVYELLQAADTVGVFQVESRAQISTLPRLKPTCFYDIVIEVAL 647 Query: 638 FRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVL 697 RPGP+Q G V ++ R+ GRE ++YP H LKP LE T GI L+QEQ+MQIA Sbjct: 648 IRPGPIQGGSVHPYLRRRQGREPVTYP-----HPLLKPALEKTLGIPLFQEQLMQIAIDA 702 Query: 698 SGYTLGGADMLRRAMGKKKP-EEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGF 756 +G+T +D LRRAMG K+ M R+ +G + GI + +I++ ++ FA +GF Sbjct: 703 AGFTPAESDQLRRAMGSKRSTARMEALRTRLLDGMAQRGIPPHASTEIYERLKAFADFGF 762 Query: 757 NKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDI 816 +SH+ ++A + Y + +LK H+PA F +A++ A L+++ R GL I P I Sbjct: 763 PESHAFSFAHIVYASAYLKRHHPAAFYSALLAAQPMGFYSPQSLMNDARRHGLTIHRPCI 822 Query: 817 NSGLYHFHVNDDG----------------------------EIVYGIGAIKGVGEGPIEA 848 + H + I G+ I + + Sbjct: 823 ATSTITAHPTPNTPQPHPPQHNPHTFHTPASARYVPLPTTHAIQLGLTDIHTITPTIAQR 882 Query: 849 IIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKA 908 II AR F ++ DL R + L LG + + A K Sbjct: 883 IITARTT-TAFTDINDLAYRAELTTTQLEALAAAGAL---RTLGITPRQGIWAAATASKN 938 Query: 909 ADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQ 968 P + P + + + +P Sbjct: 939 -----------------TPHTLPGLTPHHIPALPPMTAHDTAHADYWSTRITPNTYPTQL 981 Query: 969 YLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEV 1028 + G + ++ E + +T AG+V + T G I +L+D +G + V Sbjct: 982 IRPHLTAQ-GILTAHQVNTHEPNRRVTTAGIVTHRQRPPTAHG--ITFLSLEDETGIINV 1038 Query: 1029 MLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDID 1074 + ++++ + + LIV G+V D G + A + ++ Sbjct: 1039 ICPITIWNRHRTTVRTAQALIVRGRVEHAD--GATNLLAEHISPLN 1082 >UniRef50_Q8KTR8 DNA polymerase alpha subunit n=1 Tax=Candidatus Tremblaya princeps RepID=Q8KTR8_TREPR Length = 1083 Score = 887 bits (2292), Expect = 0.0, Method: Composition-based stats. Identities = 387/1079 (35%), Positives = 583/1079 (54%), Gaps = 46/1079 (4%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 FVHLR+HS+YSM DG+ + V A A +LA+TD N+ G VKFY A +G+KP Sbjct: 17 DFVHLRMHSEYSMHDGMVRVEDAVNAARADMQCSLALTDLNNVFGAVKFYKAAVRSGVKP 76 Query: 65 IVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLI-- 122 IVG ++ + + + LA + GY+N+ +++ A+ +D WL Sbjct: 77 IVGCHLLLRGAFG--DTSSVLALARSGGGYRNMCRILTAAWSDAATCVEARVDMRWLAGS 134 Query: 123 -ELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181 + +G+++LSG G +GR ++ GN + V + ++LEL R+G E+Y Sbjct: 135 PRILKGIVVLSGALDGPIGRHIIEGNYSAARRSVDDWLTMTQGSFYLELQRSGHSGTETY 194 Query: 182 LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241 +H A+EL+ +PVVAT+ ++FI SD+ H +R + G ++ +Q+ + Sbjct: 195 VHRALELSMYSMVPVVATHPIQFIAPSDYPLHCVRCGMAAGTLGSRATGM--FTREQHFK 252 Query: 242 SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTE-DYLVKRAKEGL 300 S E M +F DIP A++NT IA+ CN+ + +G P F E L GL Sbjct: 253 SRESMSRIFRDIPSAISNTCAIARMCNLDMDIGRLRRPVFAVCSPCNEASALACTLGSGL 312 Query: 301 EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360 R+ +R EY R+ E +++ MGF GYFLIV +F+ W++ G+PVG Sbjct: 313 RSRIMDGRMPRFTGTRR--EYAARIREEYRIVAGMGFCGYFLIVSDFVGWARARGIPVGS 370 Query: 361 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420 GRGSGAGSL+AY L ITD+DP++ LLFERFLNPERV+MPD D+DFC E RD+V+++V Sbjct: 371 GRGSGAGSLMAYVLGITDIDPIQHGLLFERFLNPERVTMPDLDIDFCQEGRDRVVQYVRR 430 Query: 421 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478 Y +V+QI TFGTMAA+A +R+ R +G Y D I++L+P PG +T+ + + Sbjct: 431 RYSNGSVAQITTFGTMAARASVREAARAMGVSYTLADSIARLVPIRPGARVTIPNSLKEV 490 Query: 479 PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538 L Y ++ +V+ LID A ++EG+ RN HAGG++I+P I D PLY PV Sbjct: 491 RMLRSRYASEGDVRLLIDTASRMEGLVRNMAVHAGGIIISPADIQDLCPLYQQAGSIVPV 550 Query: 539 TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598 +Q DK D E GLVKFDFLGL TLTI++ A + + L P D +F Sbjct: 551 SQLDKDDAESLGLVKFDFLGLTTLTILSCAARCVVGTGRAVSQHSLCG---PPCDSATFG 607 Query: 599 MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658 +LQ ++T AVFQLE GM++ ++ PD D+IAL++L+RPGP++ +V ++ RKHG Sbjct: 608 LLQAADTVAVFQLEGIGMQEALRITVPDRLGDIIALISLYRPGPMR--LVRSYCRRKHGV 665 Query: 659 EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718 E D E L P+L TYG+++YQEQVM+IAQ + GYT G AD+LRR M +K+P Sbjct: 666 EAAFVVD-----ERLLPILGETYGVMVYQEQVMRIAQAMGGYTPGEADLLRRVMSRKQPR 720 Query: 719 EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778 +MA R F GA + GI A+ +F+ ++KFA YGFNKSH+AAYA +SYQT W+KA + Sbjct: 721 DMAAHRISFVNGASRLGIGGSSAVAVFEHIKKFASYGFNKSHAAAYATMSYQTAWVKARH 780 Query: 779 PAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHV------NDDGEIV 832 P +FMAA M+ + + +++ L +C R G+ + PD+N Y F G IV Sbjct: 781 PVDFMAANMSGSLRDYDRLRLLRLDCARRGVPLRAPDVNRPSYRFTPISCYGSEGHGYIV 840 Query: 833 YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDR-L 891 YG+GA+K GE + I R FR L+D AR +++ + R +E LI +GAFD Sbjct: 841 YGLGAVKCGGEAVVRDIARCREDR-PFRSLYDFLARINSRIVKRSAVECLIKAGAFDCKP 899 Query: 892 GPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLD 951 G RA ++ L A++ D+H + + + + W + + Sbjct: 900 GGARATMLAVLPAAMR--DRHEPTALLWRI--------QQPTSAACLIAASAW--RFAVQ 947 Query: 952 GERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRG 1011 E E LG Y + HP ++ +T G+ ++ G Sbjct: 948 HESEALGYYFSIHPFSRCRGAARSIAAMGIDAIRRRARPHATLTLCGVALSMGARSGPEG 1007 Query: 1012 NRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREV 1070 + + ++D S V T ++ +L + L+V+G+V L +T + Sbjct: 1008 HS-AMAAIEDDSDCCTVYCATGSVA--GPVLIR-SPLVVTGRVYVSKDRERLSVTTLRL 1062 >UniRef50_Q1AUQ9 DNA polymerase III, alpha subunit n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AUQ9_RUBXD Length = 1084 Score = 881 bits (2277), Expect = 0.0, Method: Composition-based stats. Identities = 336/1086 (30%), Positives = 510/1086 (46%), Gaps = 53/1086 (4%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F HL S +S G+A L AA +GM ALA+TD L G+ + A GAG+ PI Sbjct: 4 FAHLHARSGFSYGFGVATPEELAGAAARMGMWALALTDRDGLYGVPRLLAACEGAGVSPI 63 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 VGA+ + +E H+ +LAA GY++L+ LI+ P+ L+E Sbjct: 64 VGAEVGM------EEGGHVVLLAAGMEGYRSLSRLITAYRCSSEDRRRPVCPLPVLLEHA 117 Query: 126 EGLILLSGG-RMGDVGRSLLRGNSALVDECVAFYEEHFPD-RYFLELIRTGRPDEESYLH 183 EGL+ L+G G + R +L G + V E F F EL + Sbjct: 118 EGLVCLTGAVPFGLLPRLVLSGREKQARKVVGLLREAFGAAGVFAELSDDRTAGSRRRMA 177 Query: 184 AAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSE 243 A GLPVVATN+ ++ D HE+ VA + L P + Q +++ Sbjct: 178 RVAAFARECGLPVVATNEAAYLRPEDHRLHEVLVAASNLTRL--PGPGYRPTDQLWLKPP 235 Query: 244 EEMCELFADIPEALANTVEIAKRCNVTVRL-GEYFLPQFPTGDMSTED-YLVKRAKEGLE 301 M LF PEALAN +A+RC +VRL G+ +P + T + L + EG Sbjct: 236 GAMRRLFEGYPEALANAALVAERCAGSVRLSGKVHMPAAVLPEGETAEGRLARLVGEGAR 295 Query: 302 ERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPG 361 R RL EL I +G YFLI E + +++ GVPV G Sbjct: 296 RRYGRP----------GDRVWRRLRRELACIGALGHAAYFLIAHEAKEIARERGVPVS-G 344 Query: 362 RGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADM 421 RGS A S+VAY L +T +PL LLFERFL+ R PD D+D E RD V + Sbjct: 345 RGSAANSMVAYCLGLTSPEPLGNRLLFERFLHEGRKDPPDIDLDLDSELRDGVRNELMGR 404 Query: 422 YGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIP-----PDPGMTLAKAFE 476 YGR + T TM+ + +R R LGHP +DR+S+ +P D +E Sbjct: 405 YGRHGAAVAATAETMSLRGAVRVAARALGHPPEEIDRLSRHVPARFRDRDRVYAGIDGWE 464 Query: 477 AEPQLPEIY----EADEEVKALIDMARKLEGVTRNAGKHAGGVVI--APTKITDFAPLYC 530 + P + + L++++ +L G AG H GGVV A +++ PL Sbjct: 465 EALREPAMRGHPLRDRRRHRLLLELSARLCGRLWQAGTHNGGVVFGTAERHLSELVPLEP 524 Query: 531 DEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIP 590 + Q+DK D+EY GL K D LGL+ T + A E+ + R + +D A+P Sbjct: 525 SGKEGLLRCQYDKDDLEYVGLPKLDLLGLKMHTALRKAGELASARLGEE----VDPYALP 580 Query: 591 LDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDN 650 D ++ +++ T +FQLES G L RL+P F D++A V+LFRPGP++ +V Sbjct: 581 PGDGATYALIRTGRTAGIFQLESPGQMSLSTRLKPRRFPDLVAQVSLFRPGPVRGDLVTP 640 Query: 651 FIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRR 710 +++R++GRE + P E L+PVL PTYG++++QEQV+++ ++G++L D++RR Sbjct: 641 YVNRRNGREPYTVPL-----EELEPVLRPTYGVMVFQEQVLEVCHRVAGFSLAEGDLVRR 695 Query: 711 AM-GKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSY 769 AM + P M + R F A G+ E A ++F+ +E F+ YGF+ +H A++A ++Y Sbjct: 696 AMTRARGPGAMRELRERFVGSAVGRGVPREKAEEVFEWMEGFSVYGFSAAHGASFAEIAY 755 Query: 770 QTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDG 829 + +++ HYPAEF ++ + L++E R GL +LPPDI+ F V DG Sbjct: 756 ASAYMRVHYPAEFFCGLLNSQPMGFYSPRVLLNEARRAGLSVLPPDIHLSGEGFTVEGDG 815 Query: 830 -EIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAF 888 + G+ KG+ E I +I+ R + F DL RT + R L +I +G Sbjct: 816 TALRVGLSYCKGLSERAIASIVSERER-EPFASAADLYRRT---AVERDSLRDMIRAGFL 871 Query: 889 DRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQV 948 D LG R L+ G L + E I A AE + P E Sbjct: 872 DALG-DRGRLLGEAGR-LPEKRRRGDQEEIPPAHPASWWAERETRGGGDAPVGLPLAEDA 929 Query: 949 VLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVT 1008 E E LGL + HP+ Y + R +G V ++ G+ + AGL+ + T Sbjct: 930 RERMEWEVLGLNVRRHPLEPYRAAL-RELGVVPSEEAKGLAHGRRVRVAGLIECLQHPPT 988 Query: 1009 KRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAR 1068 + G+ + ++D G L+ +F +Y LL ++ G+V G Sbjct: 989 RSGHPVWFLLIEDERGLLQATVFRRVYGRYGDLLHHGGAFLLEGRVEQSPRRG-FAFLVE 1047 Query: 1069 EVMDID 1074 V D+ Sbjct: 1048 RVEDLH 1053 >UniRef50_D0IVK9 DNA polymerase III, alpha subunit n=5 Tax=cellular organisms RepID=D0IVK9_COMTE Length = 1136 Score = 879 bits (2272), Expect = 0.0, Method: Composition-based stats. Identities = 280/1099 (25%), Positives = 479/1099 (43%), Gaps = 105/1099 (9%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 + L S +S + G + A LV +A +LG ALA+TD ++ G V+ + A + + I Sbjct: 40 YAELHCLSHFSFLRGASSPAELVHRAKSLGYAALALTDECSVAGAVRAHEAARDSDLHLI 99 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG---PIIDRDWLI 122 G++F + VL + G+ NL I+ A R L Sbjct: 100 HGSEFAW-------GPLRIVVLVRDLQGWGNLCEFITVARSRAAKGEYLVDESSPWQLLQ 152 Query: 123 ELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYL 182 + E L+L + + S L +A ++ A + + +L + PD+ +L Sbjct: 153 QGCECLLL---PQREQLDASDLIAVTACLENVAAHFST---NILWLGVELHLAPDDSLWL 206 Query: 183 HAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRS 242 + GLP++A DV S ++ AI G T+ + + ++++RS Sbjct: 207 QTLQQAGVVLGLPLLACGDVHMHARSRKPLQDVVTAIRLGRTVAECGFALQPNAERHLRS 266 Query: 243 EEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGLE 301 + L+ L T+E+A RC+ ++ Y PQ M+ L +G Sbjct: 267 RLRLASLYPWA--MLEATLELAGRCSFSLDEIRYHYPQESVLPGMTATQTLAWLTWDGAA 324 Query: 302 ERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPG 361 R P+ + ++L EL +I + YFL V + +++++ G+ G Sbjct: 325 GRYPQGIPE---------DVHDQLHKELALIEDQKYEMYFLTVHDIVRYARSVGIL-CQG 374 Query: 362 RGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADM 421 RGS A S V Y L IT +DP +LLFERF++ ER PD DVDF +R++VI+++ Sbjct: 375 RGSAANSAVCYCLGITAVDPENNNLLFERFISKERSEPPDIDVDFEHARREEVIQYIYGK 434 Query: 422 YGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISK-------------------- 461 YGRD + +++ +RDVG+ LG P +D ++K Sbjct: 435 YGRDRAALTAVVSCWRSRSALRDVGKALGLPADLIDALAKGQYWFSEHAQAQAQTHAEAA 494 Query: 462 ----------LIPPDPGMTLAKAFEAEPQLPEIYEA--DEEVKALIDMARKLEGVTRNAG 509 +P D K EAE E+ A ++ I++A +L+ R+ Sbjct: 495 DSAEEEQAPEALPEDWVQ--RKFQEAEVLAREMNCAVGAHRLRLWIELAWQLKDSPRHLS 552 Query: 510 KHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWAL 569 +H GG V+ K+T P+ K V Q+DK D++ GL+K D L L LT++ AL Sbjct: 553 QHVGGFVLTEGKLTRLVPVEPATMAKRSVIQWDKDDLDVVGLLKVDVLALGMLTMLRNAL 612 Query: 570 EMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFE 629 + R + P + IP +D +++M+ +++T FQ+ESR ++ RLQP F Sbjct: 613 NERTRWRGE----PWGLHQIPQEDAATYEMICQADTVGTFQIESRAQMSMLPRLQPRTFY 668 Query: 630 DMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQ 689 D++ VA+ RPGP+Q GMV ++ + ++ + L L+ T G+ ++QEQ Sbjct: 669 DLVVEVAIVRPGPIQGGMVHPYLLAR--ERARRKLPLKLEKPELANALKRTLGVPIFQEQ 726 Query: 690 VMQIAQVLSGYTLGGADMLRRAMGK-KKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLV 748 VMQIA + ++ G AD LRR+M K+ + K +G G E A IF + Sbjct: 727 VMQIAMDAAKFSAGKADELRRSMAAWKRKGGVHKFERPLIDGMVARGYKLEFAQAIFAQM 786 Query: 749 EKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMG 808 F YGF +SH+ ++AL++Y + WLK H PA F+ A++ A LV + R G Sbjct: 787 LGFGEYGFPESHAYSFALLAYASAWLKRHEPAIFLQALLNAQPMGFYSPSQLVQDARRHG 846 Query: 809 LKILPPDINSGLYHFHVN-----------DDGEIVYGIGAIKGVGEGPIEAIIEARNKGG 857 +++LP D+ +H + + G+ + +G+ I E Sbjct: 847 VRVLPVDVCHSHWHCTLEAPLQAMRGVAQPQPAVRLGLNRVARLGKAAALRI-EGEAAQA 905 Query: 858 YFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEA 917 ++++ DL R +L++ +E L + A L HR M +A Sbjct: 906 PWKDVSDLAMRA---RLDKADMEALAAADALRSLAGHRRQQMW---------------DA 947 Query: 918 IGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYV 977 QA + + A+ I + E + + GL L HP+ + R+ Sbjct: 948 AAQASLPPIFAQA--AIHEPRLELPQAAEGEEIMFDYAATGLSLRRHPLALLRPRLARH- 1004 Query: 978 GGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDK 1037 G ++ G+ + A G+V + T G TL+D +G + +++++ + Sbjct: 1005 GLKTAAELRHMLPGQKVRACGIVTVRQRPPTANGTL--FITLEDETGVINLVVWSQTFAR 1062 Query: 1038 YQQLLEKDRILIVSGQVSF 1056 ++ L R+L V G Sbjct: 1063 WRSALLASRLLAVEGIWQR 1081 >UniRef50_B9JWL2 Error-prone DNA polymerase n=34 Tax=Bacteria RepID=DNAE2_AGRVS Length = 1097 Score = 878 bits (2269), Expect = 0.0, Method: Composition-based stats. Identities = 278/1101 (25%), Positives = 509/1101 (46%), Gaps = 67/1101 (6%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 R+ L+V + +S + G + L + A +LG+ A+ + D +L G+V+ A G++ Sbjct: 2 RYAELQVTTHFSFLRGASSAIELFETAKSLGIDAIGVVDRNSLAGIVRALEASRATGVRL 61 Query: 65 IVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL 124 +VG ++Q + + V + T Y L LI+ RG G I+ D + + Sbjct: 62 VVGCRLDLQ------DGMSILVYPTDRTAYSRLARLITLGKGRG-GKDNCILMLDDIAQY 114 Query: 125 NEGLI-LLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLH 183 EGL+ +L D LR E F D +L L RP+++ LH Sbjct: 115 GEGLLGILVPDLADDTCAVQLRK-----------MAEVFGDLAYLSLCLRRRPNDQLRLH 163 Query: 184 AAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSE 243 +A + V TNDV F + +I I + T+D R +Y++ Sbjct: 164 ELSNMATRFKVKTVVTNDVLFHEPGRRQLQDIVTCIRNNTTIDTVGFERERHADRYLKPP 223 Query: 244 EEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFP-TGDMSTEDYLVKRAKEGLEE 302 EEM LF +AL T+EI RC ++ Y P+ + ++ L + + + Sbjct: 224 EEMERLFPRYRQALRRTMEIVDRCKFSLEELTYQYPEEAIVPRKTAQESLEHYVWQCVPD 283 Query: 303 RLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGR 362 R P + ++ + EL +I++M + YFL V +++++ G+ GR Sbjct: 284 RYPQGLPPKTLQI---------IRHELDLIHKMKYAPYFLTVFSIVRFARAKGIL-CQGR 333 Query: 363 GSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMY 422 GS A S V Y L +T +DP +LLFERF++ ER PD DVDF E+R++VI+ + Y Sbjct: 334 GSAANSAVCYILGVTSIDPETNNLLFERFVSQERDEPPDIDVDFEHERREEVIQWIYKTY 393 Query: 423 GRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLP 482 G++ + T AK IRDVG+ LG P + +S + T + Sbjct: 394 GKEKAALCATVNRYRAKGAIRDVGKALGLPEDLIKALSSGMWSWSQETSDRNVREL---- 449 Query: 483 EIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFD 542 + D + + +A++L G R+ G+H GG V+ ++ D P+ + ++D Sbjct: 450 NLNPDDRRLTLTLQLAQQLMGAPRHLGQHPGGFVLTHDRLDDLVPIEPSTMEDRQIIEWD 509 Query: 543 KSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQR 602 K DVE +K D L L LT ++ +I + + + LD+A I +DK +++M+ + Sbjct: 510 KDDVEALKFMKVDVLALGMLTCMSKVFALIREHKGDD----LDLAKIRQEDKATYEMICK 565 Query: 603 SETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEIS 662 ++T FQ+ESR ++ RL+P F D++ VA+ RPGP+Q MV ++ R+ +E++ Sbjct: 566 ADTLGTFQIESRAQMAMLPRLKPKTFYDLVVQVAIVRPGPIQGDMVHPYLRRREKKEDVD 625 Query: 663 YPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMG-KKKPEEMA 721 YP L+ VL T G+ L+QE M++A V +G+T G AD LR++M K ++ Sbjct: 626 YPT-----PELEAVLGKTLGVPLFQESAMRVAMVCAGFTGGEADQLRKSMATFKFTGGVS 680 Query: 722 KQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAE 781 + + G KNG E A K F +E F YGF +SH+A++AL++Y + ++K H+P Sbjct: 681 RFKEKLVSGMVKNGYTPEFAEKTFSRLEGFGSYGFPESHAASFALIAYASNYVKCHFPDV 740 Query: 782 FMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDG-----EIVYGIG 836 F AA++ + +V + G+++ P +N + + G + G+ Sbjct: 741 FCAALLNSQPMGFYAPAQIVGDARAHGVEVRPVCVNRSRWDCTLERIGTTQQHAVRLGMR 800 Query: 837 AIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFD-RLGPHR 895 +KG+ + I+ AR G F + D+ R+ + L +L + AF L R Sbjct: 801 MVKGLVVADVARIVAARM-NGPFDSVDDMWRRSGVPAAS---LVELAHADAFQPSLKLAR 856 Query: 896 AALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERE 955 ++ ++ + A + +M + + ++E + + + + Sbjct: 857 RDVLWAIKALRD--EPLPLFAAAAEREMKTIAEQNEPEVE-----LRQMTKGHNVVEDYG 909 Query: 956 TLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIG 1015 +GL L HPI ++ + V ++ G+ + AGLV+ + + +G + Sbjct: 910 HIGLTLRDHPIAFLRTDLAK-RNIVTCEEAMTARDGRWVITAGLVLVRQKPGSAKG--VM 966 Query: 1016 ICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDE 1075 T++D +G ++++ +K ++++ ++ + G++ + + + A+++ D+ Sbjct: 967 FITIEDETGPANIVVWPKLFEKRRRIVLGSSMMAIHGRIQRE--GEVVHLIAQQLFDLTS 1024 Query: 1076 AREKYA-RGLAISLTDRQIDD 1095 A R + L + D+ Sbjct: 1025 DLSGLADRDMEFKLPTGRGDE 1045 >UniRef50_Q28S37 DNA polymerase III alpha subunit n=10 Tax=Bacteria RepID=Q28S37_JANSC Length = 1097 Score = 878 bits (2268), Expect = 0.0, Method: Composition-based stats. Identities = 274/1100 (24%), Positives = 481/1100 (43%), Gaps = 74/1100 (6%) Query: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61 + +V L + + +S + G + L A LG L D + G+V+ + A Sbjct: 19 PKADYVELGLTTCFSFLHGASDAVDLATTAHGLGYDKLGCADLNTMAGVVRLHAEALKAQ 78 Query: 62 IKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPI-----I 116 I P++G + + Y L L+SK A I Sbjct: 79 ITPVIGCRLRLVTGED------FLAYPRDRAAYGRLCTLLSKGKMTDVDGAWQAKGACDI 132 Query: 117 DRDWLIELNEG--LILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTG 174 D L ++ LI L G R+ + P + + Sbjct: 133 TLDDLAGHSKDVQLIALPGPRL------------DHFEAGFKRLIRALPTLRHIAVSYLY 180 Query: 175 RPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNY 234 D+ + ++ LA+A GL ++ATNDVR+ ++ I T+ N Sbjct: 181 EGDDRARINRLDRLAQAHGLGIMATNDVRYHAPDRRPLQDVMTCILHKTTIQKAGFLLNA 240 Query: 235 SPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLV 293 + +++++S +M +LFA P A+ T IA C +R Y P+ + + + YL Sbjct: 241 NAERHLKSPAQMIQLFAQWPHAIRATRAIADACTFDLRELAYEYPKETVPEGRTPQGYLE 300 Query: 294 KRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKD 353 + +G R PD L EL +I +M P YFL + + + +++ Sbjct: 301 ELTWKGAARRYPDGIPDAISTT---------LRKELALIKKMDIPQYFLTIEQIVDYARH 351 Query: 354 NGVP--VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKR 411 P + GRGS A S V Y L IT +DP DLLFERF++ ER PD DVDF E+R Sbjct: 352 KCDPPILCQGRGSAANSAVCYVLGITAVDPNTNDLLFERFISEERKEPPDIDVDFEHERR 411 Query: 412 DQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL 471 ++VI+H+ + YGRD + T + +R+VG+V+G ++K I G Sbjct: 412 EEVIQHIYNRYGRDRAALCATVIHYRPRMAVREVGKVMGLSEDITSALAKTIWGSWGR-- 469 Query: 472 AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCD 531 + E I D + I +A ++ G+ R+ G+H GG ++ K+ + P+ Sbjct: 470 -EVGAREAAEAGIDLKDPLMARTIKLADQMIGMPRHLGQHVGGFILTEKKLNETVPIGNG 528 Query: 532 EEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPL 591 ++DK D++ ++K D L L LT I A ++I + L +A+I Sbjct: 529 AMADRTFIEWDKDDIDELRILKVDILALGMLTCIRKAFDLIKAHYGRT----LTLASIEQ 584 Query: 592 DDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNF 651 D+ ++DML + ++ VFQ+ESR +++ RL+P F D++ VA+ RPGP+Q MV + Sbjct: 585 GDRATYDMLCKGDSLGVFQVESRAQMNMLPRLKPREFYDLVIQVAIVRPGPIQGDMVHPY 644 Query: 652 IDRKHGREEISYPDVQWQH--ESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLR 709 + R+ G+E YP + H E L+ VL T G+ ++QEQ M++A V + ++ A+ LR Sbjct: 645 LRRRAGKEPEDYPSPKPPHDPEELRKVLSRTKGVPIFQEQAMKLAMVAAEFSPDEANQLR 704 Query: 710 RAMG-KKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVS 768 +AM + + + G + E A + F+ ++ F YGF +SH+A++A + Sbjct: 705 KAMATFRSKGTIGELEEKMVSRMINRGYDPEFAHRCFNQIKGFGDYGFPESHAASFAHLV 764 Query: 769 YQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDD 828 Y + W+K HYP F AA++ + +V + G+ + D+N + + Sbjct: 765 YISSWIKCHYPDVFCAALLNSQPMGFYAPAQIVRDAREHGVIVRAADVNYSGWDTTLEPV 824 Query: 829 GE----IVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884 G+ + G I G+ + + I+ AR+ F +L DL R + + L KL Sbjct: 825 GQGQFAVRLGQRQIDGMRQDVADRIVTARHT--PFTDLIDLRQRA---QTDAGSLRKLAA 879 Query: 885 SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944 + A + R + + +F +E ++I P Sbjct: 880 ADAMRSMMLDRRQALW----------ETRALHDAQDLPLFAEQKDEGDEIRFDLPEM-PI 928 Query: 945 PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004 E VV D +T L L HP++ K +ER G + G+ + AG+V+ + Sbjct: 929 CEHVVAD--YQTTRLSLKAHPMSFLRKSMERQ-GYHHTGALAHMRNGQSVKLAGIVLIRQ 985 Query: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLK 1064 + +G + T++D G ++++ ++ +++++ RI+ V G V D + Sbjct: 986 RPGSAKG--VCFITVEDEIGVANLVVWPKVMEAFRKVIMGARIIDVRGVVQRSD--DVIH 1041 Query: 1065 MTAREVMDIDEAREKYARGL 1084 + A + D +A E+ + + Sbjct: 1042 VVAHHLADRSDALERLSNDI 1061 >UniRef50_A1BA11 DNA polymerase III, alpha subunit n=6 Tax=Alphaproteobacteria RepID=A1BA11_PARDP Length = 1077 Score = 877 bits (2266), Expect = 0.0, Method: Composition-based stats. Identities = 271/1090 (24%), Positives = 478/1090 (43%), Gaps = 76/1090 (6%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 +V L V S +S + G + L A +G AL I D +L G+V+ + ++P Sbjct: 23 DYVELAVTSAFSFLHGASHPRELALAAHLMGYDALGIADLNSLAGVVRLHATAKKLHLRP 82 Query: 65 IVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQR---GYGAAGPIIDRDW- 120 ++GA + + T + Y L LI+K + G D + Sbjct: 83 VIGARIVLA------DGTAFLAYPTDRAAYGRLASLITKGRRHDLAGNWQKKGRCDLNLA 136 Query: 121 -LIELNEG--LILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPD 177 L +G LI L G + + LR L ++ R D Sbjct: 137 DLATHAQGMRLIWLPGDDLSPLPDLALR-LPQLSHVAASWL---------------YRGD 180 Query: 178 EESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQ 237 + + ++ A+A GL +VA NDV + ++ I +G T+ + + Sbjct: 181 DRARINRLDRAAQAAGLSIVAVNDVHYHAPDRRPLQDVMTCIREGTTIARAGLLLAQNAE 240 Query: 238 QYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKRA 296 ++++ EM LFAD P A+ T EIA C ++ +Y P+ + + +L Sbjct: 241 RHLKPPAEMVRLFADWPHAIRATREIADSCRFSLDELQYEYPRESVPPGLTPQQHLENLT 300 Query: 297 KEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGV 356 +G + R PD+ L EL +I + YFL + + +++++D + Sbjct: 301 WQGADWRYPAGVPDK---------VRATLIKELALIREKKIAQYFLTIHDIVRFAEDRAI 351 Query: 357 PVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIE 416 GRGS A S V Y L IT +DP + +LLFERF++ R PD DVDF E+R++VI+ Sbjct: 352 L-HQGRGSAANSAVCYVLGITPVDPAKHELLFERFISQNRKEPPDIDVDFEHERREEVIQ 410 Query: 417 HVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFE 476 H+ D Y RD T ++ IR+VG+V+G ++ + G ++ A Sbjct: 411 HIYDRYRRDRAGLCATVIHYRPRSAIREVGKVMGLSEDVTSALADTVWGSWGKDMSAADT 470 Query: 477 AEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKH 536 + L D ++ + +A ++ G+ R+ +H GG V+ +++ P+ Sbjct: 471 MQAGLD---LGDPLLRRTVRLAEEMIGMPRHLSQHVGGFVLTEGPLSETVPIGNAAMPDR 527 Query: 537 PVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKS 596 ++DK D++ ++K D L L LT I +I K L ++ DD+ + Sbjct: 528 SFIEWDKDDIDELHILKVDVLALGMLTCIRKCFALIKAHYGK----VLTLSDFDHDDQPT 583 Query: 597 FDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKH 656 + MLQR ++ FQ+ESR ++ RL+P F D++ VA+ RPGP+Q MV ++ R+ Sbjct: 584 YKMLQRGDSIGTFQVESRAQMAMLPRLKPKRFYDLVIQVAIVRPGPIQGNMVHPYLRRRA 643 Query: 657 GREEISYPDVQWQHE-SLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMG-K 714 G E + +P + LK +L T G+ ++QEQ M+IA V + +T D LR+AM Sbjct: 644 GLETVDFPGPRDGDPDELKNILFRTEGVPIFQEQAMKIAMVAAEFTPNEVDDLRKAMATF 703 Query: 715 KKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWL 774 + + + + + G + A + F+ ++ F YGF +SH+AA+A ++Y + WL Sbjct: 704 RSRGTIGQLQDRMVGKMVERGYTRDFAERCFNQIKGFGDYGFPESHAAAFAHLAYVSAWL 763 Query: 775 KAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN---DDGEI 831 K H+PA F AA++ + +V + G+ +LP D+N + + + Sbjct: 764 KCHHPAAFAAALLNSQPMGFYAPAQIVRDARDHGVTVLPADVNISEWDNTLEPCDGTFAL 823 Query: 832 VYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRL 891 G+ I G+ E E I +AR++ + +L DL R L+ R + + + + Sbjct: 824 RLGLRQIDGLPEALAERIKQARHE--PYADLADLKTRAG---LDARAIRLIAAADGLRSM 878 Query: 892 GPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLD 951 G R A + Q + +FG E PE + P + Sbjct: 879 GLDRRAGLW----------QARALRDAPELPLFGRRDEGPE----PAVTLPAMPLYEHVT 924 Query: 952 GERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRG 1011 + +TL L L HP+ + + G V + + AG+V+ + + G Sbjct: 925 ADYQTLRLSLKAHPMRFLRRSLTAQ-GYVPAAGLAALSNRSRLRMAGIVLVRQRPGSANG 983 Query: 1012 NRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVM 1071 TL+D +G ++++ ++++++ R+L V GQ+ + G + A + Sbjct: 984 T--CFVTLEDETGVANLVVWEKTFAQFRKVVMTARLLEVHGQLQRAE--GVTHIVAHWLG 1039 Query: 1072 DIDEAREKYA 1081 D EA + A Sbjct: 1040 DRSEALLRLA 1049 >UniRef50_Q21LY9 Error-prone DNA polymerase n=12 Tax=Proteobacteria RepID=DNAE2_SACD2 Length = 1029 Score = 873 bits (2256), Expect = 0.0, Method: Composition-based stats. Identities = 290/1088 (26%), Positives = 506/1088 (46%), Gaps = 80/1088 (7%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 ++ L+ ++YS + + LV++A LG ALAITD +L G+VK + A +K Sbjct: 2 QYTQLQTLTNYSFLKSASHPQELVEEAKILGYHALAITDECSLAGIVKAHVAAKELNLKL 61 Query: 65 IVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL 124 +VG+ F + + +A N Y L+ IS A +R D L Sbjct: 62 LVGSYFELT------NGFKIIAIAPNRQAYAELSGFISLARRRASKGEYEAHLSDLRFRL 115 Query: 125 NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHA 184 + LI+ + + VD V F R ++ + T E+ Sbjct: 116 QQCLIIWLP---------YFNNHISDVD--VTTLATAFKQRLWIGVSHTLIAAEQRLFSH 164 Query: 185 AVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEE 244 +LA A +P+VA+ + + +I AI + + + + + ++ Sbjct: 165 LNKLANALHVPLVASGLTYMHNKNCKPLLDILTAIRENTPIQQLGTRLHSNAEVNLKPLH 224 Query: 245 EMCELFADIPEAL-ANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTE-DYLVKRAKEGLEE 302 E+ +L+ PEAL T IA+ CN ++ Y P+ +T +L K KEG + Sbjct: 225 ELNQLY---PEALIQQTQVIAQLCNFSLDELRYQYPKELVPSNTTPIAHLKKLVKEGEAK 281 Query: 303 RLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGR 362 R P+ +++ + EL +I +M + YFL V + + +++ + GR Sbjct: 282 RWPQGTPEHAQKI---------IAMELGLIEEMQYEYYFLTVHDIVHFARSKNIL-CQGR 331 Query: 363 GSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMY 422 GS A S+V Y L IT++ P + ++LFERF++ ER PD DVDF ++R++VI+++ Y Sbjct: 332 GSAANSVVCYCLFITEIAPGQINVLFERFISKERNEPPDIDVDFEHQRREEVIQYIYQKY 391 Query: 423 GRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISK-LIPPDPGMTLAKAFEAEPQL 481 GR+ + T T +++ IRDVG+ +G G V +++K L D L K E+ Sbjct: 392 GRERAALAATVITYRSRSAIRDVGKAMGLEAGLVGQLAKSLAWWDRTGDLIKRMESFGLN 451 Query: 482 PEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQF 541 PE + ++ + +++ G R+ +H GG +I K++D PL + Q+ Sbjct: 452 PETQKT---MQHFFALVQQILGFPRHLSQHVGGFIITQDKVSDLVPLENASMPDRTIIQW 508 Query: 542 DKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQ 601 DK D+E GL+K D L L LT + +LE +++ A +A IP +D ++ ML Sbjct: 509 DKYDIEAMGLLKVDVLALGMLTALRKSLETVSQYDA----AVYSLATIPREDPATYAMLS 564 Query: 602 RSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEI 661 + ++ VFQ+ESR ++ RL+P CF D++ +A+ RPGP+Q MV ++ R+ G EE+ Sbjct: 565 KGDSIGVFQVESRAQMSMLPRLRPKCFYDLVIEIAIVRPGPIQGDMVHPYLRRRDGIEEV 624 Query: 662 SYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK-KKPEEM 720 Y Q++ +K VLEPT GI ++QEQ +++A V + ++ G AD LRRAM K + Sbjct: 625 HY-----QNDKIKSVLEPTLGIPIFQEQAIRLAMVAADFSGGEADQLRRAMASWGKNGSL 679 Query: 721 AKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA 780 K F +G NG + A ++F+ ++ F GYGF +SHSA++AL+ Y + WLK H+PA Sbjct: 680 LKFEDKFIQGMLNNGYPLDFAHRLFEQIKGFGGYGFPESHSASFALLCYASSWLKCHHPA 739 Query: 781 EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN--------DDGEIV 832 F A++ + L+ + R + +LP ++N+ Y HV I Sbjct: 740 AFYCALLNSQPMGFYSASQLIQDARRHKVVVLPVEVNASGYESHVVLTNHNTSAPPNIIQ 799 Query: 833 YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892 G+ IKG+ E I+ A F L +L R +L+ L+ L + A +L Sbjct: 800 LGLHMIKGLSILTAERIVLA-KGDKPFTTLKELSLRA---QLSSADLQLLASADALHKLT 855 Query: 893 PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952 +R + + + E + + S + + Sbjct: 856 GNRHNSRWQAAALMP------------HSPLLDGAELEEDALNTPAPSIEK-----NIQT 898 Query: 953 ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012 + + GL L HP+ L+ + + + ++ G AGLV + T +G Sbjct: 899 DFNSTGLSLRLHPMA-LLRAQQPFNRCKKQSELASIHNGGFAQVAGLVTGRQRPGTAKGT 957 Query: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072 TL+D +G + ++++T ++ +Q L ++L+V G++ D + A ++ D Sbjct: 958 L--FLTLEDETGNINIVVWTSTQERCRQALLTAKLLLVKGRLETKD--NVTHIIAGQMFD 1013 Query: 1073 IDEAREKY 1080 ++ Sbjct: 1014 YSHMLSEF 1021 >UniRef50_A9FIY0 DNA polymerase III, alpha subunit n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FIY0_SORC5 Length = 1108 Score = 872 bits (2253), Expect = 0.0, Method: Composition-based stats. Identities = 298/1142 (26%), Positives = 488/1142 (42%), Gaps = 122/1142 (10%) Query: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61 + FV L S +S ++G + LV +A LG+ LA+ D + G V+ + A Sbjct: 5 ASVPFVELCGRSCFSFLEGASHPEELVHRAKELGLEGLALCDRDGIYGSVRAHTAAKKVE 64 Query: 62 IKPIVGADFNVQCDLLGDEL-----THLTVLAANNTGYQNLTLLISKAYQRGYGAAGPII 116 + IVGA+ + G E + +L ++ GY NL L++ A+ I Sbjct: 65 QRVIVGAELTLGAPRGGAERAPEVRPSVVLLVEDSEGYANLCRLLTIAHAECEKGMASIS 124 Query: 117 DRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRP 176 GL + L+ + + + F +R + + Sbjct: 125 AEAIAAAQR-GLSAIVP------LDPLVPAGVSGA--LLGTLRDAFGERALVATWKHLDR 175 Query: 177 DEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSP 236 + + AA+ G VVAT + S ++ I TLD + Sbjct: 176 RDGERVAAALAAERRHGPCVVATARPLYHHPSRKPLADVLACIRTKTTLDQAGTRIAPNA 235 Query: 237 QQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQ--FPTGDMSTEDYLVK 294 + Y+RS +M LF D P +A TVE+A RC ++ Y P +++ L + Sbjct: 236 EAYVRSGAQMAALFRDHPAWVARTVEVASRCRFSLSELRYSFPSDALCMPGETSDQALRR 295 Query: 295 RAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDN 354 +EG +R P P ++E EL +I ++G YFL V + ++ ++ Sbjct: 296 LTEEGCRDRYPEGAP---------PPVRAQIEKELALIAKLGVAPYFLSVQQVVKIARAR 346 Query: 355 GVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQV 414 + GRGS A S V + L +T +DP LLFERFL+ ER PD DVDF E+R++V Sbjct: 347 QIL-CQGRGSAANSAVCFVLGVTAVDPARSSLLFERFLSEERHEPPDIDVDFEHERREEV 405 Query: 415 IEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKA 474 I+ + +MYGRD + + K+ +R+VG+ G VDR+S L+ A Sbjct: 406 IQAIYEMYGRDRAAMVSEVIAYRGKSALREVGKAFGFSADQVDRLSGLVHHHE----ADI 461 Query: 475 FEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEG 534 E + D V+ + MA LEG R+ H GG V++ + AP+ Sbjct: 462 TEQRVSEAGLDPDDVRVRQAVMMASALEGFPRHLSIHVGGFVLSSEPLHKVAPVEPARME 521 Query: 535 KHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMI---------------------- 572 V +DK D++ G K D L L LT I AL +I Sbjct: 522 GRTVIPWDKDDLDDLGFFKIDVLALGMLTAIRKALGLIHSDRYAGLAGSSVHTARDPAFA 581 Query: 573 ------------------------------NKRRAKNGEPPLDIAAIPLDDKKSFDMLQR 602 + R +P +A IP +D ++ + R Sbjct: 582 GPSVHTARDPAFAGPSVHTARDPAPAGVSFHAGRGAAFDPIAALAQIPPEDPAVYEAIGR 641 Query: 603 SETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEIS 662 ++T VFQ+ESR ++ RL+P+ F D++ VA+ RPGP+Q GMV ++ R+ G+E Sbjct: 642 ADTVGVFQIESRAQMAMLPRLKPNKFYDLVIEVAIVRPGPIQGGMVHPYLRRRTGQEPPV 701 Query: 663 YPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK-KKPEEMA 721 P H L P+LE T G+ L+QEQVMQIA V +GYT G AD LRR M KK + Sbjct: 702 SP-----HPCLDPILERTLGVPLFQEQVMQIAMVGAGYTPGEADQLRRDMAAWKKHGRLE 756 Query: 722 KQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAE 781 + R +G + GI+A+ ++ ++ F YGF +SH+A++AL+ Y + WLK H+ A Sbjct: 757 RHRGRLIQGFAEQGISAKFGEMLYQQIQGFGEYGFPESHAASFALLVYASAWLKVHHQAA 816 Query: 782 FMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVND------DGEIVYGI 835 F A++ A LV + R G+++ P + + + + G+ Sbjct: 817 FTCALLNAQPMGFYSPSALVQDAQRHGVEVRPVCVVQSAWDATLEPSAEPSAGPALRLGM 876 Query: 836 GAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHR 895 +KG+GE + AI+ AR + F L DL RT+ KK V + R Sbjct: 877 RLVKGLGEAAVAAIVAAREEA-PFASLPDLVRRTELKK--NEVEALAEAGALAALVPARR 933 Query: 896 AALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERE 955 AL + ++ +F + E ++ P L + Sbjct: 934 EALWRARAPRVE--------------GLFEGVPIEQDRD----VGLPPLRPLEQLALDYG 975 Query: 956 TLGLYLTGHPINQYLKEIERYVGGVR---LKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012 +GL L HP+ + ++R G R +++ G+ + AG+VV + T G Sbjct: 976 RVGLSLHDHPMRHVRRALKRRRGAGRVRTAEEIKAARDGESVRVAGMVVGRQRPATASG- 1034 Query: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072 + TL+D +G + V++ +Y+ + +L+V+G++ + + ARE+ Sbjct: 1035 -VTFMTLEDETGVVNVIVQRQVFAEYEHVARNAALLLVAGRIERQ--GEVVHVLARELDR 1091 Query: 1073 ID 1074 ++ Sbjct: 1092 LE 1093 >UniRef50_B5EJ94 DNA polymerase III, alpha subunit n=3 Tax=Acidithiobacillus RepID=B5EJ94_ACIF5 Length = 1020 Score = 871 bits (2251), Expect = 0.0, Method: Composition-based stats. Identities = 282/1073 (26%), Positives = 482/1073 (44%), Gaps = 75/1073 (6%) Query: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 P + L S S + G + L+ +A ALG ALAIT+ +L + + G Sbjct: 7 PEYAELHCLSALSFLRGASAVEDLLDRAQALGYRALAITEECSLGSAARAHSHACNIGFP 66 Query: 64 PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIE 123 I+G++ + + + +L + GY L+ I++A R D L E Sbjct: 67 LILGSEIALT------DGPRIVLLVQEHDGYVALSRFITRARGRAGKGHYQARMAD-LPE 119 Query: 124 LNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLH 183 L L ++ LR + A +A + + +L D+ + L Sbjct: 120 LVGCLAIILPDSQS------LRFDVAGA---IAVRDCLGAENVWLGAELLRGGDDAAQLR 170 Query: 184 AAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSE 243 +E A +P +A DV S ++ AI L D + ++++R Sbjct: 171 EVLEQGRALNIPCLACGDVHMDRRSRRFLQDVLTAIRLRRPLADLGWALARNGERHLRPR 230 Query: 244 EEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQ-FPTGDMSTEDYLVKRAKEGLEE 302 + E++ PE L T+ +A+RC ++ Y P D +DYL + A++GL+ Sbjct: 231 SVLAEIYP--PELLVETLRVAERCQFSLDSLVYRYPDGACPADQQRDDYLAELARQGLQR 288 Query: 303 RLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGR 362 R +LE EL ++ ++ + GYFL V + ++++K G+ GR Sbjct: 289 RYPQGV---------ATVVATQLEAELALVRELDYAGYFLTVHDIVRFAKGRGIL-CQGR 338 Query: 363 GSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMY 422 GS A S++ YAL IT++DP LLF RF++ +R PD DVDF E+R++VI++V Y Sbjct: 339 GSAANSVICYALGITEVDPSRMQLLFARFISRDRREPPDIDVDFEHERREEVIQYVFQHY 398 Query: 423 GRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLP 482 GRD + T ++ +RD R LG + R+++ + G + E Sbjct: 399 GRDHAALTATIIHYRPRSAMRDAARALGFAPVEIQRLTQGLAWWDGRQIRPERLQEQGFD 458 Query: 483 EIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFD 542 ++ L+ + L G R+ +H GG+V++ T + P+ + V Q+D Sbjct: 459 ---PTSPTIQRLVTVVNALVGFPRHLSQHVGGMVLSATPLNALVPIEPAAMAERAVIQWD 515 Query: 543 KSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQR 602 K D++ G++K D L L L+++ AL+ + + +A IP +D ++ MLQR Sbjct: 516 KDDLDVLGILKVDILALGMLSVLRRALDDLG----------MTLADIPAEDPATYAMLQR 565 Query: 603 SETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEIS 662 E+ VFQ+ESR ++ RL+P CF D++ VA+ RPGP+Q MV ++ R+ G E + Sbjct: 566 GESLGVFQVESRAQMSMLPRLKPRCFYDLVIEVAIIRPGPIQGDMVHPYLRRRQGLEPVR 625 Query: 663 YPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK-KKPEEMA 721 YP +K VLE T G+ ++QEQVMQIA +G++ AD LRRAM ++ + Sbjct: 626 YPG-----PEVKKVLERTLGVPIFQEQVMQIAIDAAGFSGDEADGLRRAMAAWRRKGHLG 680 Query: 722 KQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAE 781 G G + A ++ ++ FA YGF +SH+A++AL+ Y + W+K H+PA Sbjct: 681 PYSDRLIRGLRLRGYSEAFAQRLCQQIQGFAEYGFPESHAASFALLVYASAWIKCHHPAI 740 Query: 782 FMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGV 841 F AA++ + +V E R G+++L DI + V DG + G+ IKG+ Sbjct: 741 FAAALLNSQPMGFYAPAQIVQEARRCGVEVLSVDICHSDWDCKV-QDGALRLGLCLIKGM 799 Query: 842 GEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNS 901 E ++ R +GG R L+ L +L +GA L R + + Sbjct: 800 SPKEAERLLHWRAQGGALHSE---ALR-HGLGLSAAALHQLAYAGALSSLHGDRHQALWA 855 Query: 902 LGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYL 961 + Q + A + + + + + LGL L Sbjct: 856 V-----------------QGSLPLPTALPMPVVPEQAPALPAETSAAACIADYQQLGLSL 898 Query: 962 TGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDD 1021 HP+ +L+E G R+ ++ + AGLV + T G TL+D Sbjct: 899 GPHPL-HFLRERIAQSGYRRIAEVRLQHHDRPDRLAGLVTHRQRPGTAHGT--VFLTLED 955 Query: 1022 RSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDID 1074 SG + V+++ ++ +++ L + R+L + G++ S L A + D+ Sbjct: 956 ESGMINVIVWPQRVEGWRRALLQGRLLGIGGRLERQGVS--LHFIADAMEDLS 1006 >UniRef50_C3M9Z5 Error-prone DNA polymerase n=28 Tax=cellular organisms RepID=DNAE2_RHISN Length = 1117 Score = 871 bits (2250), Expect = 0.0, Method: Composition-based stats. Identities = 272/1101 (24%), Positives = 491/1101 (44%), Gaps = 81/1101 (7%) Query: 1 MS-EPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59 MS EP F L +++S ++G A ++ A G+ L + D ++ G+V+ + Sbjct: 1 MSGEPTFHELGARTNFSFLEGAAPAEEMIVFAKKAGLSGLGVADRNSVAGVVRAHAKAKV 60 Query: 60 AGIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRD 119 GA + D + N G+ +L L+S R + D Sbjct: 61 EDYPFQPGARL-----VFADATPDILAYPKNRRGWGHLCRLLSVGNLRAKKGDCTLYLAD 115 Query: 120 WLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEE 179 L E E L+L+ G R +++ + + +R +L L + Sbjct: 116 LL-EWQEDLLLIVMPGEG-------RPQPEILEALLEKLKASAGNRLYLGLAPRYDSFDR 167 Query: 180 SYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQY 239 +A + + ++ATND + D ++ AI + + + +++ Sbjct: 168 HDFAVLATVARSLDVRLLATNDALYHDPHYRPLADVVTAIREHVPIASAGFLLQKNAERH 227 Query: 240 MRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKEG 299 ++ +EM LF D PEA+ N + KR + ++ + P + + L + EG Sbjct: 228 LKGPKEMVRLFRDYPEAIVNANKFFKRLSFSLDELSHQYPDENAEGETPAESLRRLVAEG 287 Query: 300 LEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVG 359 ER P++ R ++E EL++I+ + YFL V + +++++ + Sbjct: 288 ALERYPSGVPEKVTR---------QIEYELELIHDKKYEPYFLTVHKLVKFARSVNIL-C 337 Query: 360 PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVA 419 GRGS A S V + L ITD+DP +F LLF+RFL+ +R PD DVDF E+R++VI+++ Sbjct: 338 QGRGSAANSSVCFCLGITDVDPQKFTLLFDRFLSRDRDEPPDIDVDFEHERREEVIQYIY 397 Query: 420 DMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEP 479 YG++ + +++ R+V + G D S L+ G + E + Sbjct: 398 RTYGKEHAGLTAAVISYRSRSAGREVAKAFGLSE---DVQSALVSSVWGWGTSPFTEEQA 454 Query: 480 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 539 + + AD + ++ A L R+ +H GG VI ++ + P+ + Sbjct: 455 KGAGLDMADPLTRRVLAYASLLMNFPRHLSQHVGGFVITRDRLDEVVPIMNTAMPDRYMI 514 Query: 540 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKK-SFD 598 ++DK D++ ++K D L L LT + A + K P +A + D + +D Sbjct: 515 EWDKDDLDQLKILKVDVLALGMLTCLARAFRFLEVHYGK----PKTLAELYEDQQAAVYD 570 Query: 599 MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658 M+ R++T VFQ+ESR ++ RL+P D++ VA+ RPGP+Q MV ++ R+ + Sbjct: 571 MICRADTVGVFQIESRAQMSMLPRLRPREMYDLVIEVAIVRPGPIQGNMVHPYLKRREAQ 630 Query: 659 ---EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMG-K 714 E + YP LK VLE T G+ L+QEQ MQIA +G++ AD LRRAM Sbjct: 631 RKGEPVDYPS-----PELKAVLERTLGVPLFQEQAMQIAITAAGFSPSEADRLRRAMATF 685 Query: 715 KKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWL 774 K+ + +G +NG E A + F+ ++ F YGF +SH+A++A + Y + W Sbjct: 686 KRTGTIHTFERKMIDGMVRNGYEREFAERCFNQIKGFGEYGFPESHAASFASLVYASSWF 745 Query: 775 KAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDD------ 828 KA+YP F AA++ + LV + G++ILP D+N + + + Sbjct: 746 KAYYPDIFCAALLNSQPMGFYAPAQLVRDAREHGVRILPVDVNHSDWDALLEGEAMFRKE 805 Query: 829 ----------------GEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTK 872 + G +KG+ + +EA++ R +G +R + DL R Sbjct: 806 AIDPRHGEMRDVIRSGKAVRLGFRLVKGLRQPDMEALVARRGEG--YRSVHDLWLR---S 860 Query: 873 KLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPE 932 L R VLE+L + AF +G R + ++ + A+ + +F Sbjct: 861 GLTRAVLERLADADAFRSIGLDRRRALWAVKALNE-------QSAVERLPLFDGAGSTDL 913 Query: 933 QIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGK 992 Q+E + A + + L L L HP++ + R +G + +D+ T G+ Sbjct: 914 QVEPAVA-LPDMAAGEHVIHDYRYLTLSLKAHPVSFMRGDFAR-MGILSSRDLARTPAGR 971 Query: 993 VITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSG 1052 +T AGLV+ + + G + T++D +G ++++ KY+ + R++ V G Sbjct: 972 RVTVAGLVLVRQRPGSANG--VIFMTIEDETGVANIIVWEKTFQKYRPQVMGSRLVKVRG 1029 Query: 1053 QVSFDDFSGGLKMTAREVMDI 1073 ++ + SG + + A + D+ Sbjct: 1030 RLQSE--SGVIHVVAEYMEDM 1048 >UniRef50_D0WMM2 Putative DNA polymerase III dnae2 n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WMM2_9ACTO Length = 1187 Score = 866 bits (2238), Expect = 0.0, Method: Composition-based stats. Identities = 325/1180 (27%), Positives = 518/1180 (43%), Gaps = 150/1180 (12%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 + L VHS YS +DG + A LV +A L + ALA+TD G+V+ A AG+ Sbjct: 35 PYAELHVHSAYSFLDGASLPADLVARACELELQALAVTDHGGFPGVVQLASAARTAGLPA 94 Query: 65 IVGADFNV----QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 ++G + + + H+ +LA + GY+ L+ + +A + + Sbjct: 95 VIGTELTLLSEDRSAQADPPGEHIVLLARDPEGYRRLSRTVGEAMLASGEKNRARYELED 154 Query: 121 LIELN-------------------EGL---------------------------ILLSGG 134 L + EGL I S G Sbjct: 155 LAAASGGNWMVLSGCRKGGVRRALEGLEGQGAEGSRGGLPLEGAGSRERADCLGIAGSPG 214 Query: 135 RMG-------------DVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRTGRPDEES 180 G G S + E V E F +EL +G P + Sbjct: 215 IAGGRRNSGFNPGASAFSGPSPALWDVDAAVEQVRRLESLFGKGNVAVELTNSGAPLDRE 274 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 A VE A G+P +AT +V + D D ++ A TL++ + ++ Sbjct: 275 RCRALVETANRAGVPYLATGNVHYARPRDRDVADVFAATRARTTLEEIDPFLPANGS-HL 333 Query: 241 RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTE-DYLVKRAKEG 299 RS +M L D PEA+A I C + L LP FP + TE +L +E Sbjct: 334 RSGGQMLSLHRDHPEAVAEAARIGAECAFDLALVAPDLPDFPVPEGHTEASWLRCLTRER 393 Query: 300 LEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVG 359 +R P E ++ EL VI +GFPGYFLIV E + + + G+ Sbjct: 394 ALKRYGPR--------SSNPRAWEVIDHELDVIVGLGFPGYFLIVCEIVDFCRSRGIW-C 444 Query: 360 PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVA 419 GRGS A S V +AL IT +D + +LFERFL+P R PD DVD ++R++VI+HV Sbjct: 445 QGRGSSANSAVCFALGITAVDAVRHKMLFERFLSPGRSGPPDIDVDIESDRREEVIQHVY 504 Query: 420 DMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL----IPPDPGMTLAKAF 475 + YGR +Q+ + ++ IRD + LG+ G V+ + +P + + + Sbjct: 505 ERYGRKCAAQVANTISYRPRSAIRDAAKALGYEEGQVEAWLRSVEHKVPAKADVGGSAGY 564 Query: 476 EAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGK 535 E P YEAD A+ D+A +++ + R+ G H GG+V+ + D P Sbjct: 565 E-----PAGYEADVPA-AVADLASRMQRLPRHLGIHTGGMVLCDRPVIDVCPAGWARMPG 618 Query: 536 HPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWAL-EMINKRRAKNGEPPLDIAAIPLDDK 594 V Q+DK D AGLVKFD LGL LT + + ++ + A + PL + +P +D Sbjct: 619 RTVLQWDKDDCAEAGLVKFDLLGLGMLTALRKSYTQLTDAGIAGSDGKPLGLHNLPQEDP 678 Query: 595 KSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDR 654 + + +LQ ++T VFQ+ESR + RL+P+CF D++ VAL RPGP+Q V ++ R Sbjct: 679 RVYALLQAADTVGVFQVESRAQMATLPRLRPECFYDIVIEVALIRPGPIQGDAVSPYLAR 738 Query: 655 KHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK 714 + GRE ++YP H KP LE T G+ L+QEQ+MQIA ++G+T AD LR+AMG Sbjct: 739 RRGREPVTYP-----HPLTKPALEKTLGVPLFQEQLMQIAIDVAGFTPAQADRLRKAMGA 793 Query: 715 KKP-EEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLW 773 K+ E M++ +S G G+ + +I+D ++ FA +GF +SHS ++A + Y + W Sbjct: 794 KRSHERMSELKSELYSGMASKGVPPRVREEIYDKLDAFAEFGFPESHSFSFAYLVYASAW 853 Query: 774 LKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDG---- 829 LK H+P F A ++ A LV + R G+ + P + L V G Sbjct: 854 LKVHFPEHFYAGILAAQPMGFYSPQSLVADARRHGVHVASPCVVRSLGEASVRKRGAAER 913 Query: 830 ------------------------------------EIVYGIGAIKGVGEGPIEAIIEAR 853 E+ G+ +++G+G + I++AR Sbjct: 914 DVAKCGGERAEMECDEPECGDGAAASTRLVDPHGDLEVRLGLDSVRGLGAAAVSRILKAR 973 Query: 854 NKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHA 913 G F + D+ R +L R LE L +GA LG R + A AD+ Sbjct: 974 Q-GAPFTDAADMARRA---RLGRGQLEALAAAGALQALGVGRR---EGIWAAQALADKTV 1026 Query: 914 KAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEI 973 + + Q + G + + + EQ + + G+ +P Q+L+ Sbjct: 1027 QGKGWYQPTLPGT------ESIGTAPALDEMTEQEAAIADISSTGVSAGSYP-TQFLRGD 1079 Query: 974 ERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTD 1033 G +++ D+ G+ + AG+V + T G + +L+D +G L V+ T Sbjct: 1080 LAGRGILKVSDLGEAPVGERVRVAGVVTHRQRPWTATG--VTFISLEDETGILNVVCSTG 1137 Query: 1034 ALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDI 1073 D+Y+Q+ + + L+V G V D G + A + + Sbjct: 1138 LWDRYRQVARRSQGLVVRGMVERGD--GAMNFVADALEPL 1175 >UniRef50_UPI00016C4B8A DNA polymerase III alpha subunit n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4B8A Length = 1617 Score = 866 bits (2237), Expect = 0.0, Method: Composition-based stats. Identities = 291/783 (37%), Positives = 451/783 (57%), Gaps = 46/783 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F HL +H+ YS++DG + PLVK+ LGM A+AITD NL G ++FY GIKPI Sbjct: 5 FCHLHLHTHYSLLDGFNRIQPLVKQTKELGMNAVAITDHGNLYGAIEFYMECKKGGIKPI 64 Query: 66 VGADFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIID 117 +G + + D THLT+LA N TG++NL L S AY G+ P ID Sbjct: 65 IGYEAYLAPGSRLDRDSKGELGFSTHLTLLAQNETGFKNLIKLSSSAYLEGF-YRNPRID 123 Query: 118 RDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPD 177 R L +GLI LSG G+ + +++ ++ ++ + F + YF+E+ G Sbjct: 124 RQILEAHKDGLICLSGCLAGEFNQYIIKDKPQEAEKTAKWFRKVFGENYFIEIQNNGIGL 183 Query: 178 EESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYS-- 235 ++ A ++A G+P+VAT D ++ + D AH+I I+ + DP++ + Sbjct: 184 QDQCTPVAADIANRLGVPLVATADAHYLCAEDAQAHDILFCINT-RQMHDPRKKKYPEER 242 Query: 236 -PQQYM-RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYL 292 P Y RS E+M LF + +A+A + EIA + N+ + + P F T + + E YL Sbjct: 243 MPNPYFVRSPEDMYRLFPNYQDAVARSQEIADKVNIDLDFKKRHFPVFTTPEGRTPEQYL 302 Query: 293 VKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSK 352 + + G+EER K +RL+ EL +I +MGF YFLIV +F+++++ Sbjct: 303 RELCERGMEERY---------EGKASEAVRKRLDHELGIIARMGFSSYFLIVWDFVRFAR 353 Query: 353 DNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRD 412 + G+P RGSG G++V Y L ++ + P+E+DLLFERFL+P R PD D+DFC ++R+ Sbjct: 354 EEGIPCT-ARGSGCGAIVCYLLYMSHVCPIEYDLLFERFLDPNRSEAPDIDIDFCQDRRE 412 Query: 413 QVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGM--T 470 VI++V YG ++V+QI TFGT+AAKA ++DVGRVLG ++ + KL+P + + Sbjct: 413 LVIDYVKKKYGEESVAQIGTFGTLAAKAALKDVGRVLGQTPDRMNALCKLVPMKGAISKS 472 Query: 471 LAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYC 530 L +A + P Y+ D +K ++D+A KLEG RN GKHA GVVIA +T++ P+ Sbjct: 473 LQEALDESPDFKREYDQDPSIKQVVDIALKLEGANRNVGKHAAGVVIANGPVTNYVPVQR 532 Query: 531 DEEGK----------HPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNG 580 + TQ++ +E GL+K DFLGLR LT+++ +++I K R Sbjct: 533 PPKKGGSDEGSDDTTTMTTQWEMGILEKVGLLKMDFLGLRNLTVLDNCVKLIKKTRGITV 592 Query: 581 EPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRP 640 EP PL D+ ++ +LQR + VFQLES G+++L+KR++PD D+IA++AL+RP Sbjct: 593 EP----TKFPLTDEATYQLLQRGDAKGVFQLESEGIRELLKRMKPDNIRDLIAVLALYRP 648 Query: 641 GPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGY 700 GPL+ GMVD +++ K+ R++ YP H ++ VL T+ +++YQEQ+M+I L G Sbjct: 649 GPLEGGMVDEYVECKNKRKQPFYP-----HPVMEEVLSETFAVMVYQEQIMRILNKLGGI 703 Query: 701 TLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSH 760 L A +A+ KK E + ++ F GA++ G+ AE A +IF+L+ KF GYGFNK Sbjct: 704 ELAKAYACIKAISKKNFEIINARKVDFVTGAKERGLEAEKADEIFELIVKFGGYGFNKCV 763 Query: 761 SAA 763 A Sbjct: 764 VAG 766 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 118/409 (28%), Positives = 218/409 (53%), Gaps = 15/409 (3%) Query: 759 SHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVD---ECWRMGLKILPPD 815 SH+AAYA + YQT +LK HY AE+MAA++++++D+ K +D + R+G+ +LPPD Sbjct: 1208 SHTAAYAQIGYQTAYLKTHYTAEYMAALLSSEIDDGNKRDVFIDHISDARRLGVDVLPPD 1267 Query: 816 INSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLN 875 +N G+ F V + I++G+ AIKGVG G I+ ARN+GG F++LFD C R D + + Sbjct: 1268 VNRGMADFDVL-NNRIIFGLTAIKGVGRGAALEIVRARNEGGKFKDLFDFCERVDRRIIA 1326 Query: 876 RRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIE 935 + +E +I +GAFD G R+A ++ A ADQ A + GQ +F + E + Sbjct: 1327 KAAVEGMIQAGAFDVFGK-RSAQFAAVAKAYAVADQRAAEKRKGQTGLFDDVEEAADAGP 1385 Query: 936 --QSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKV 993 Q WPE L E+E LG Y++ HP+ Q+ +++ R+ + G Sbjct: 1386 TNQGLTDVPEWPETERLKFEKEALGFYISSHPLAQHDEQLRRFRTHDCGVLAKGGKNGTE 1445 Query: 994 ITAAGLVVAARVMVTKR----GNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILI 1049 AG++ V + G + + ++D +G + ++++D ++++L+ D + I Sbjct: 1446 ARIAGMITNLDVRTANKGRNIGRKYAMFRIEDFTGSVRCIMWSDEYSRFRELVSSDTVAI 1505 Query: 1050 VSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQL--LNRLRQSLEP 1107 G +++ ++++ ++EAR ++ + L + + ++D+ L L + L+ Sbjct: 1506 FEGVLNWAPDRAEPDFGVKKLITMEEARTEFTKSLVLKVAYSEVDEDLRKLEAVSVILKR 1565 Query: 1108 HRSGTIPVHLYYQRADARA-RLRFGATWRVSPSDRLLNDLRGLIGSEQV 1155 +R G PV+L + + + +L+ ++V+P+ L +L L+G V Sbjct: 1566 YR-GPCPVYLSIRDGNGKQVQLKMSEEYKVNPAAVKLEELEMLLGQGSV 1613 >UniRef50_B2UJ29 Error-prone DNA polymerase n=70 Tax=Betaproteobacteria RepID=DNAE2_RALPJ Length = 1079 Score = 865 bits (2234), Expect = 0.0, Method: Composition-based stats. Identities = 287/1104 (25%), Positives = 492/1104 (44%), Gaps = 64/1104 (5%) Query: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 P + L S+++ + G + + LV++A G ALA+TD ++ G + A +K Sbjct: 11 PDYAELHCISNFTFLTGASHPSELVERAKLYGYQALALTDECSVAGTARALVASKEHELK 70 Query: 64 PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIE 123 I+G+ F V+ + G+ L +LA N GY NL+ +I+ A + D L Sbjct: 71 LIIGSRFTVR-NADGEPWLRLVLLAQNIEGYGNLSEIITHARLAAPKGEY-RLLADDLAS 128 Query: 124 LNEGLILLSGGRMGDVGRSLLRGNSALVDECVA---FYEEHFPDRYFLELIRTGRPDEES 180 L L G D LL + +A + + F DR + L R ++ Sbjct: 129 PQGELAHLRGAP--DCLAILLPDYDPDPQQLLAQAWWCQRVFGDRLSIALELPLRHADDR 186 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 + + ++E +P+VAT V+ H++ AI L + S +Q M Sbjct: 187 HRGTVLAVSEQIDVPMVATGGVQMHTRQRKPLHDVLTAIRLSKPLSECGLELAPSAEQAM 246 Query: 241 RSEEEMCELFADI--PEALANTVEIAKRCNVTVRLGEYFLPQFPTGD-MSTEDYLVKRAK 297 R+ ++ L+ + L TVE+A CN ++ EY P + M+ +YL Sbjct: 247 RTRMQLAFLYQGEGGEKILRRTVELAALCNFSLDEIEYEYPSEVVPEGMTPAEYLRAETF 306 Query: 298 EGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVP 357 G R ++ ++E EL +I ++G+ +FL V + ++++++ G+ Sbjct: 307 AGAARRYPNGVSEK---------VHAQIEEELGLIAELGYEPFFLTVYDVVKFARNEGIL 357 Query: 358 VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEH 417 GRGS A S V Y L IT+++P + LF RFL+ R PD DVDF ++R++VI++ Sbjct: 358 -CQGRGSAANSAVCYCLGITEVNPDSGNTLFARFLSRARNEPPDIDVDFEHQRREEVIQY 416 Query: 418 VADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEA 477 + YG + T ++ +RDVGR LG G V++++K K F Sbjct: 417 IYKKYGVTRTALAAALITYRTRSALRDVGRALGIDLGIVEQVAK---GQAWWDSRKEFAQ 473 Query: 478 EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHP 537 + V + +L G R+ +H GG VIA K++ P+ Sbjct: 474 RAGQQGLDPESPLVLRWAQLVDQLRGFPRHLSQHVGGFVIAQGKLSRLVPIENAAMENRR 533 Query: 538 VTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMI----NKRRAKNGEPPLDIAAIPLDD 593 V Q+DK D+E L+K D L L LT I L+M+ +R L + +P DD Sbjct: 534 VIQWDKDDLESLRLLKVDVLALGMLTAIRRTLDMVDALPGRREHYGATAKLAMQNLPDDD 593 Query: 594 KKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFID 653 +++DM+ R+ET VFQ+ESR + ++ RL+P + D++ VA+ RPGP+Q GMV ++ Sbjct: 594 TETYDMICRAETIGVFQIESRAQQSMLPRLRPREYYDLVIQVAIVRPGPIQGGMVHPYLQ 653 Query: 654 RKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMG 713 R+ + + V + +K VLE T G+ ++QEQVM+IA +T AD LRR M Sbjct: 654 RREAKRNGNTDCVTYPGPEVKAVLERTLGVPIFQEQVMEIAMKAGDFTADDADRLRRDMA 713 Query: 714 K-KKPEEMAKQRSVFAEGA-EKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQT 771 K+ + + + K + + +E FA YGF +SH+A +A ++Y + Sbjct: 714 AWKRKGNLTQHQERLVHAMVVKRRYDPAFVEALCKQMEGFAEYGFPESHAAGFAKLAYVS 773 Query: 772 LWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHV------ 825 +LK H PA F AA++ + LV E R +++LP D+ + ++ + Sbjct: 774 SFLKCHEPAAFFAALLNSQPMGFYSPSQLVQEARRSHVRVLPADVTASVWDSTLHPRADG 833 Query: 826 --NDDG----EIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVL 879 +DG +I G+ I+G+ P IEA F + DL R L+R L Sbjct: 834 ETGEDGLVQPDIRLGLNRIRGMR-KPAAERIEAARAQAPFTSVEDLAHRA---ALDRHDL 889 Query: 880 EKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYA 939 L + A L HR + + HA +L + Sbjct: 890 NVLAAANALKSLAGHRRQALWQTLALQEPGHDHA------------LLRQARPVEAPLEL 937 Query: 940 SCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGL 999 P E+V+ D +LGL L HP+ +ER + + G++ A G+ Sbjct: 938 PAPPIGEEVMAD--YGSLGLSLQSHPVELLRARLER-MRFATAATLAGYRNGQLARACGI 994 Query: 1000 VVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDF 1059 V + T G +++D +G + V+L+ +++ ++ + ++L V G+ + Sbjct: 995 VTVRQRPGTANGT--IFVSIEDETGAINVILWPHLIERQRREVLNAQLLGVYGKWQCERE 1052 Query: 1060 SGGLKMTAREVMDIDEAREKYARG 1083 + + A+ ++D+ + A Sbjct: 1053 TR--HLVAQHLVDLTPLLGRLATS 1074 >UniRef50_A3QER8 DNA polymerase III, alpha subunit n=3 Tax=Gammaproteobacteria RepID=A3QER8_SHELP Length = 1078 Score = 863 bits (2229), Expect = 0.0, Method: Composition-based stats. Identities = 293/1125 (26%), Positives = 504/1125 (44%), Gaps = 115/1125 (10%) Query: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61 +E ++ L V S+YS + G + LV++A LG ALA+TD + G+VK + A Sbjct: 3 AELQYAELHVLSNYSFLRGASHPHELVEQAKRLGYQALALTDECSFAGVVKAHEAAKRCD 62 Query: 62 IKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL 121 +K I+GA+F++ L +LA Y ++ LI+ A +R G + + + Sbjct: 63 LKLILGAEFHLDEGL-------FVLLAPCRFAYGEISALITNA-RRSQGKGEYRVSLEAI 114 Query: 122 IELNEGLILLSGG------RMGDVGRSLLRGNSALVD----------------------- 152 + + L+L + G+ R R + A D Sbjct: 115 LAQQQSLLLWRPPSLAQFRQAGEARRDEARSDDARSDLAVNDTAESEMAGGDTAKGSAAQ 174 Query: 153 ----ECVAFYEEH-----------FPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVV 197 ++ Y +H FPDR L + R P E L L++ + +P V Sbjct: 175 SDEPNLLSRYRDHIASIASRLVVAFPDRLHLLMERLLLPGEALNLQQWQWLSQTQKVPCV 234 Query: 198 ATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEAL 257 A VR ++ +I I G LD + + + ++ + + E + Sbjct: 235 AAGGVRMHEAERQPLLDILTCIAHGRDLDSGVALCSINAEASLKPIAAQRKRYPQ--EWI 292 Query: 258 ANTVEIAKRCNVTVRLGEYFLP-QFPTGDMSTEDYLVKRAKEGLEERLAFLFPDEEERLK 316 N + +A+RC+ ++ +Y P + M DYL + +EG R PD Sbjct: 293 DNGLALARRCHFSLDELKYEYPAEVVPAGMQASDYLAQAVREGARRRFPDGVPDR----- 347 Query: 317 RRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKI 376 + E EL++I M + +FL + + + ++K + GRGS A S+V Y L I Sbjct: 348 ----VKAQYEKELELIAAMAYEYFFLTIYDIVCFAKSQQILY-QGRGSAANSVVCYCLGI 402 Query: 377 TDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTM 436 T++DP + ++LFERF++ ER PD DVDF E+R++VI+++ YGRD + Sbjct: 403 TEVDPTKINMLFERFISKERNEPPDIDVDFEHERREEVIQYIYRKYGRDRTALAAAVICY 462 Query: 437 AAKAVIRDVGRVLGHPYGFVDRISKLIP-PDPGMTLAKAFEAEPQLPEIYEADEEVKALI 495 K+ + DVG+ LG V + K I DP QL + + L+ Sbjct: 463 RFKSAMGDVGKALGIDAEQVALMIKNIDRRDPKHHWT------TQLAAMLPEAGRGRMLL 516 Query: 496 DMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFD 555 + + L G R+ +H GG +I+ +++ P+ V Q+DK D+E GL+K D Sbjct: 517 PLVQTLIGFPRHLSQHVGGFIISAGPLSELVPIENAAMADRTVIQWDKDDLESLGLLKVD 576 Query: 556 FLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRG 615 L L LT I +++ E +A + ++ + + MLQ ++ VFQ+ESR Sbjct: 577 ILALGMLTAIRKTFTLLSL-----PEKAFSMADVAWEEAEVYRMLQAGDSIGVFQVESRA 631 Query: 616 MKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKP 675 ++ RL+P C+ D++ +A+ RPGP+Q MV ++ R+ G E + YP +++ Sbjct: 632 QSAMLPRLKPACYYDLVVQIAIVRPGPIQGDMVHPYLRRRDGLEAVEYPS-----PAVES 686 Query: 676 VLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK-KKPEEMAKQRSVFAEGAEKN 734 VL T G+ ++QEQV+Q+A V +G++ G AD LRRAM K+ E+ K + +G Sbjct: 687 VLSRTMGVPIFQEQVIQLAMVAAGFSGGEADQLRRAMASWKRTGELEKFEAKLLQGMAAR 746 Query: 735 GINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNT 794 G + A +I+ ++ F YGF +SHSA++AL++Y + +LK HYPA F A++ + Sbjct: 747 GYSQTFAEQIYRQIKGFGEYGFPESHSASFALLAYVSAYLKHHYPAAFCCALLNSQPMGF 806 Query: 795 EKVVGLVDECWRMGLKILPPDINSGLYHFHVN-----DDGEIVYGIGAIKGVGEGPIEAI 849 L+ + R + +LP +N + + + I G +KG+ I+ + Sbjct: 807 YSPSQLIQDVQRHDVMVLPVCVNHSDWDNSLVPLLEAEQPAIRLGFRQVKGLRLEEIKTL 866 Query: 850 IEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAA 909 I AR +GG F + L L++ L L + A L HR L Sbjct: 867 IAARPEGG-FTRVEQLYE----LGLSQGCLTLLASADALLTLAGHRYQARWQL------- 914 Query: 910 DQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQY 969 + Q + + + P + P E + + LGL L H + Q Sbjct: 915 -------SAYQPSL-PLFDDLPAVASEVV--LAPPSEMAAMQSDYRHLGLSLGRHVMAQ- 963 Query: 970 LKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVM 1029 L+ + +VG ++ G+++ AG+VV + T G + TL+D +G + V+ Sbjct: 964 LRGLAPFVGCRHASELADCRHGQLVHVAGVVVGRQRPGTASG--VTFVTLEDETGNINVI 1021 Query: 1030 LFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDID 1074 +++ +Q +IL V+G + SG + A + D+ Sbjct: 1022 VWSATARAQRQPFLTSKILKVTGVLETQ--SGVSHVIAGRLEDLS 1064 >UniRef50_Q6MQS6 Error-prone DNA polymerase n=1 Tax=Bdellovibrio bacteriovorus RepID=DNAE2_BDEBA Length = 1061 Score = 862 bits (2228), Expect = 0.0, Method: Composition-based stats. Identities = 270/1096 (24%), Positives = 496/1096 (45%), Gaps = 88/1096 (8%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGH------- 58 FV L S++S + G + +V +A G +A+ D L G+V+ + Sbjct: 25 FVELLGRSNFSFLQGASSPEEMVSQAVEFGYDGMALCDLNGLYGVVRGFQTIQSPSLFTA 84 Query: 59 ----GAGIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGP 114 ++G++ + + + + ++ N GY +L +++ ++ Sbjct: 85 SPQVKENFHYLIGSELTLT------DESSVVLIPMNKQGYSHLCEILTLGKRQAAKGFSK 138 Query: 115 IIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTG 174 + + + + N+GL+ L+ DE E+ F +R +L L R Sbjct: 139 -LSLEQIEKYNQGLLCLA--------------LPPWTDERYEKLEKIFDNRLYLPLWRDL 183 Query: 175 RPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNY 234 + + + L E + T ++ TL + K Sbjct: 184 TWESQEFCRQGFALEEKYKAQLFVTQRPFMHSPERKPLFDVLTCTLHHTTLAEAKNKLIQ 243 Query: 235 SPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLP--QFPTGDMSTEDYL 292 + ++ ++S E++ L+ D + + TVEI+ R ++ Y P P+G M+ +Y+ Sbjct: 244 NSERCLKSLEDISWLWQDRLDLVEKTVEISARVTFSLNEIRYRYPASSLPSG-MTPTEYM 302 Query: 293 VKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSK 352 +G E R PD+ +++E EL++I + + YFL + E ++ Sbjct: 303 RHLTLKGAESRYPEGIPDKA---------LKQIEHELELIKDLQYEDYFLTLKEICDFAS 353 Query: 353 DNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRD 412 + + GRGS A S+V + L +T +DP++ DLLFERFL+ ER PD D+DF +R+ Sbjct: 354 ERKILY-QGRGSAANSVVCFCLGLTAIDPVKMDLLFERFLSRERREPPDIDIDFEHSRRE 412 Query: 413 QVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA 472 +VI+H+ + Y + + T ++ IR+ +V G P ++ + K + D L Sbjct: 413 EVIQHIYEKYNERHAAMVCTVIRYRSRMAIRETAKVFGMPLAKINAMIKFMGRDGMKRL- 471 Query: 473 KAFEAEPQLPEIYEADE-EVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCD 531 +P + + + K + +A++L G R+ G H GG +I IT+ P+ Sbjct: 472 ----LDPAVAADFGMEPGPWKMFMALAQQLHGFPRHLGIHTGGFLITQDPITEMVPVEKA 527 Query: 532 EEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPL 591 V Q++K DV++ L+K D L L LT + +++ + ++ +A +P Sbjct: 528 TMNGRYVIQWNKDDVDFLRLMKIDVLSLGMLTCLRKCFDLLRDVKGRDY----SLATLPA 583 Query: 592 DDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNF 651 DDK ++DM+ R+ET VFQ+ESR + + R+QP F D++ +AL RPGPLQ GMV F Sbjct: 584 DDKPTYDMICRAETVGVFQIESRAQMNTLPRMQPRNFYDLVIEIALIRPGPLQGGMVHPF 643 Query: 652 IDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRA 711 + + + ++++ H +L+P+L+ T GI ++QEQVM++ ++ +T G AD LRR Sbjct: 644 LKLRQNPPK----EIKYAHPALEPILKKTMGIPIFQEQVMKMVVAVADFTPGEADELRRV 699 Query: 712 MGK--KKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSY 769 M K+ M G ++GI++E A +IF +E FA YGF +SHSA++AL++Y Sbjct: 700 MSSAWKRKATMGGIEQRLRTGFARHGISSEYADQIFKTIEGFANYGFPESHSASFALLTY 759 Query: 770 QTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDG 829 + +LK HYP F ++ + ++ E R G+ + P D+ Y + + Sbjct: 760 ASCYLKCHYPDVFACGLLNSQPMGFYAPRTIIAEAQRNGVVVAPLDVQKSDYDYTIEKTA 819 Query: 830 E---IVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 + G+ +I G+ E I I ++R + G + +L D RT +L R VL KL +G Sbjct: 820 AGDLLRVGLRSIYGIPEVLIRRIEDSRKEEGLYIDLADFIRRT---QLPRSVLLKLAAAG 876 Query: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPE 946 AF+ + L+ +L Q ++ G +EPE + Sbjct: 877 AFESFNSNVRELIWNLESLSLDQQSFLWGHPKEQFEL-GEDDDEPEHLPFE-------SN 928 Query: 947 QVVLDGERETLGLYLTGHPINQYLKEI---------ERYVGGVRLKDMHPTERGKVITAA 997 L E ++ G + HP++ + +R+V +D+ + + A Sbjct: 929 WDRLRREYDSKGYSVESHPMSVLRTYLHSKSEALREKRFVPYFSSEDLKRMKTKTKVRVA 988 Query: 998 GLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFD 1057 GLV + T +G + TL+D G + +++ + K + + +L + GQV Sbjct: 989 GLVAITQRPPTAKG--MCFITLEDEFGFVNIVIHPEIYQKDRTTIYTRSLLEIHGQVE-- 1044 Query: 1058 DFSGGLKMTAREVMDI 1073 + A ++ + Sbjct: 1045 KVGAITNIRAERILPL 1060 >UniRef50_C5BVF1 DNA polymerase III, alpha subunit n=3 Tax=Actinomycetales RepID=C5BVF1_BEUC1 Length = 1194 Score = 861 bits (2224), Expect = 0.0, Method: Composition-based stats. Identities = 319/1208 (26%), Positives = 500/1208 (41%), Gaps = 170/1208 (14%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 R+ L HS +S +DG ++ LV +AA L + A+AITD L G+V+F A G++ Sbjct: 8 RYAELHAHSAFSFLDGASQPEALVAEAARLELDAVAITDHDGLYGVVRFAEAARALGMRS 67 Query: 65 IVGADFNVQCD-----LLGDELTHLTVLAANNTGYQNLTLLISKAYQ-------RGYGAA 112 + GA+ ++ + + THL VLA GY L+ I+ A+ R YG A Sbjct: 68 VFGAELSLDQRTPATGVPDPDATHLVVLARGPAGYHRLSRAIATAHLATGKKGERDYGHA 127 Query: 113 GPIIDRDWLIELNEG-LILLSGGRMGDVGRSLL----------------------RGNSA 149 + + L E G ++L+G R G V R+L G A Sbjct: 128 VGLDPLEVLAEQAAGDWLVLTGCRKGAVRRALDGGADGADGAGGAGGAGSIAGAEHGERA 187 Query: 150 LVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSD 209 E D +EL G P + + +LA GLPVVAT V + Sbjct: 188 AARELDRLVALFGRDNVAVELTDLGAPADSARCDTLADLAARAGLPVVATGGVHCAHPRE 247 Query: 210 FDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNV 269 ++ A+ +L++ +P ++RS +EM A P+A+ E+ C Sbjct: 248 GRLVDVLAAVRARRSLEEIDGWLPPAP-AHLRSADEMLARHARHPQAVRTAAELGLECAF 306 Query: 270 TVRLGEYFLPQFPTGDMSTE-DYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETE 328 + L LP P E +L + R RP+ ++ E Sbjct: 307 DLTLVAPRLPPHPVPPGYDEASWLRELTMRCARTRYGTR--------DERPDAYAIIDRE 358 Query: 329 LQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLF 388 L +I ++GFPGYFLIV E + + G+ GRGS A S V YAL IT +D ++ LLF Sbjct: 359 LDIIVRLGFPGYFLIVHEIVDFCVQQGIL-CQGRGSAANSAVCYALGITAVDAVQHKLLF 417 Query: 389 ERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRV 448 ERFL+ R PD DVD +R++VI+ V YGR+ +Q+ + ++ +RD R Sbjct: 418 ERFLSDGRSGPPDIDVDIESGRREEVIQFVYTRYGREHAAQVANVISYRPRSAVRDAARA 477 Query: 449 LGHPYGFVDRISKLIP-------PDPG-------------------MTLAKAFEAEPQLP 482 G+ G D SK I PDPG + A A P++ Sbjct: 478 FGYDVGQQDAWSKGIERWGTLRGPDPGNPDPAVKANATSTSSTSSSPSRATGTAAGPKIR 537 Query: 483 E-----------------IYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDF 525 E E E ++D+A ++ + R+ G H+GG+V+ + + Sbjct: 538 EKGVDTHDPAPPRHAPASAREMGEIPNHVLDVAEQMLRLPRHLGIHSGGMVLCHRPVIEV 597 Query: 526 APLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLD 585 P+ V Q+DK D AGLVKFD LGL LT + A E + + L Sbjct: 598 CPVEWATMPGRTVLQWDKDDCADAGLVKFDLLGLGMLTALRLAFEQVEATSGER----LA 653 Query: 586 IAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQS 645 + ++P +D K +++L ++T VFQ+ESR + RL+P F D++ VAL RPGP+Q Sbjct: 654 LHSLPQEDPKVYELLCAADTVGVFQVESRAQISTLPRLKPRNFYDIVVEVALIRPGPIQG 713 Query: 646 GMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGA 705 V FI R++G+E+++Y H L+ L T GI L+QEQ+MQIA ++G++ A Sbjct: 714 NSVHPFIRRRNGKEKVTY-----LHPLLEGALSKTLGIPLFQEQLMQIAIDVAGFSGSEA 768 Query: 706 DMLRRAMGKKKP-EEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764 D LRRAMG K+ E+M G G+ ++ +I+D ++ F+ +GF +SH+ ++ Sbjct: 769 DQLRRAMGSKRSLEKMEALHERLLAGMADRGVPRDVGEQIYDKLKAFSDFGFPESHAFSF 828 Query: 765 ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824 A + Y + WLK H+P F A ++ A LV + R G+ + I H Sbjct: 829 AYLVYASAWLKIHHPEAFFAGLLGAQPMGFYSPASLVADARRHGVVVRRASIADSAVHAL 888 Query: 825 VN----DDGEIVYGIGA---------------IKG------------------------- 840 V D G + A +G Sbjct: 889 VEHGAADHGAVGLVPRATQSSETWLVDAGKADARGAAAVDPALPLDPAADAEDADGGPSG 948 Query: 841 ------VGEGPIE--------AIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 +G PI I+ R++ F + DL R +L LE L +G Sbjct: 949 RRFAVRLGLAPIRGIGEKTAERIVTERDRA-PFADAQDLARRV---RLTAAQLEALATAG 1004 Query: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPE 946 A G R + S G AL + G + + + Sbjct: 1005 ALRCFGTSRREALWSAG-ALAGESGRVHLTSQGTVVQDVLGGTASGVAAPALPGMDAF-- 1061 Query: 947 QVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVM 1006 V + GL +P ++ G + + E G + G+V + Sbjct: 1062 -EVASADVWATGLSPDRYPTEFVRPGLDA-AGVRPVATLGGIENGARVEVGGVVTHRQRP 1119 Query: 1007 VTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMT 1066 T G + +L+D +G L V+ +Y+Q + L+V G V D G + + Sbjct: 1120 GTAGG--VTFLSLEDETGLLNVICSPGLWARYRQTALRSPALVVRGTVERAD--GVVNLM 1175 Query: 1067 AREVMDID 1074 A + ++ Sbjct: 1176 ADGMRSLE 1183 >UniRef50_Q6M7C6 Error-prone DNA polymerase n=7 Tax=Bacteria RepID=DNAE2_CORGL Length = 1055 Score = 859 bits (2220), Expect = 0.0, Method: Composition-based stats. Identities = 304/1078 (28%), Positives = 482/1078 (44%), Gaps = 96/1078 (8%) Query: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61 + F L S Y+ + G + + +V +A LG+ AL++ D G V+F A AG Sbjct: 56 ASVPFAELHATSSYNFLTGASDPSDVVVQAKKLGLVALSVMDRDGFYGAVRFAEAAAEAG 115 Query: 62 IKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQ-RGYGAAGPIIDRDW 120 + + GA+ ++Q + LTVL N GY+ L+ LIS A G Sbjct: 116 MHTVYGAELSLQEGV-------LTVLCKNPEGYKKLSHLISDAKMATGEKGEVRYPPLPM 168 Query: 121 LIELNEG-LILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEE 179 + E G ++L+G +D+ + P+ LE T P++ Sbjct: 169 VAEHAAGDWVVLAG--------------FQWLDKIDYVIDCFKPENIVLEFGSTMTPEDA 214 Query: 180 SYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQY 239 L + + + + A+ L D + + + Sbjct: 215 DRNEYLRRTQAKFQLRGILSTNPESAARGSVRLAGAKQALARKMPLADAESELHPMGTTW 274 Query: 240 MRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTE-DYLVKRAKE 298 MRS + + + D + +A TVE+A C T+ L LP++ T TE +L Sbjct: 275 MRSGDTLLKAHPDYADLIATTVELAAECAFTLDLVAPNLPKWDTPGEHTEMSWLAHLVST 334 Query: 299 GLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPV 358 ++ R D + R +++ EL VI ++GFPGYFL+V + +++ +D+ + Sbjct: 335 RIDTRYVGRSADIKARAA------TQIDYELGVIEKLGFPGYFLVVNDLVEFCRDSNIL- 387 Query: 359 GPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHV 418 GRGS A S V + L IT+ +P+ LLFERFL+P+R PD D+D +R++VI++V Sbjct: 388 CQGRGSAANSAVCFVLGITNAEPISAGLLFERFLSPDRDGPPDIDIDIESGRREEVIQYV 447 Query: 419 ADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAE 478 + YGRD +Q+ T K +RD R LG+P G D +K Sbjct: 448 YEKYGRDNAAQVANVITYRTKGAMRDAARALGYPQGAADAWAK----------------- 490 Query: 479 PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538 E ++++A + +G R+ G H+GG+VI I D P+ V Sbjct: 491 -------GTSEPPDDVLELAAQFKGQPRHLGIHSGGMVICDRPIADVVPVEWARMDNRSV 543 Query: 539 TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598 Q+DK D AGLVKFD LGL L I+ L+++ + R K +++ + L + + +D Sbjct: 544 VQWDKDDCATAGLVKFDLLGLGMLEAIHHMLDLVAEHRGK----KINLWELDLAEPEVYD 599 Query: 599 MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658 ML +++ VFQ+ESR + RL+P F D++ VAL RPGP+Q G V ++ R+ G Sbjct: 600 MLCKADAVGVFQVESRAQLSTLPRLKPRTFFDLVVEVALIRPGPIQGGSVHPYLRRRAGE 659 Query: 659 EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKK-P 717 E I+Y H L+ L T GI L+QEQ+MQ+A +G++ G AD LRRAMG K+ P Sbjct: 660 EAITY-----DHPVLEKSLGKTLGIPLFQEQLMQVAVDAAGFSGGEADSLRRAMGSKRSP 714 Query: 718 EEMAKQRSVFAEGAEK-NGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKA 776 E MA RS F +G + NGI E A K+++ + FA YGF +SHS ++A + Y + W K Sbjct: 715 ERMAALRSRFFQGLKDTNGIVGETAEKLWNKIVAFAAYGFPESHSQSFASLVYFSAWFKY 774 Query: 777 HYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIG 836 HYPAEF ++ A L+ + R G+ ILP +N +G I G+ Sbjct: 775 HYPAEFCVGLLRAQPMGFYSPQSLISDARRHGVSILPITVNDSGVEADA-PNGAIRLGLN 833 Query: 837 AIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRA 896 +KG+G + I F + DL R D LN +E L +GA D LG R Sbjct: 834 LVKGLGHDAAQRI----EDNAPFDSIPDLSRRAD---LNVAQVEALARAGAVDCLGVGRR 886 Query: 897 ALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERET 956 + G A E G V+ + ++ Sbjct: 887 QALWQAG--------VAATEKPGMLPGLSVIEA---------PALPGMSAFELMATNISA 929 Query: 957 LGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGI 1016 G+ P+ + +E +G V + E G + AG+V + T G + Sbjct: 930 TGVTADYQPMALIRERMEE-LGIVPADRLLEVEDGTRLRIAGIVTHRQRPQTASG--LTF 986 Query: 1017 CTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDID 1074 ++D +G + VM+ + + L + LI+ G V + G + A + +D Sbjct: 987 LGMEDETGLMNVMVSVGLWQRQRVLARNAKALIIRGIVQ--NAQGVATVVADRLEPLD 1042 >UniRef50_C0W389 DNA-directed DNA polymerase n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W389_9ACTO Length = 1110 Score = 858 bits (2218), Expect = 0.0, Method: Composition-based stats. Identities = 318/1138 (27%), Positives = 500/1138 (43%), Gaps = 103/1138 (9%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M E + L HS YS +DG + L AA LG+ ALA+TD + G+V+ AG Sbjct: 1 MFESSYAELHSHSAYSFLDGANEPEDLAAAAAELGLTALALTDHDGMPGIVRHAQAGRAL 60 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 G+ + G + + + HL VLA + GY++L IS+ + P + Sbjct: 61 GLPTVHGTELTM------SDGAHLPVLARSPEGYRHLVSAISQHNLQAGRRQEPAHRLED 114 Query: 121 LIELNEG---------LILLSGGRMGDVGRSL------LRGNSALVDECVAFYEEHFP-D 164 L + G ++L+G G + R+L ++ D C+ E D Sbjct: 115 LAQALRGGTGMAAPSSCLVLTGTARGPLRRALGDPARPHTWDTQAADICLGRMVELLGAD 174 Query: 165 RYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFT 224 +E+ G P + + LA + LPV+AT VR +D ++ A G Sbjct: 175 GVAVEITLNGGPTDAALTRMLTRLAASHRLPVLATGAVRCARPADSRLADVLTATRLGTD 234 Query: 225 LDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTG 284 L+ R + +++RS EM L P+A+ T E+A + L LP Sbjct: 235 LEGA-RGHLPAIGRWLRSGAEMARLHRRAPQAVGVTAELAADLAFDLALVAPDLPAAQVP 293 Query: 285 DMST-EDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLI 343 T +L + ++G R D P + L+ EL+VI +GFPGYFLI Sbjct: 294 PGHTPASWLRELTRQGALLRYGTREQD--------PHAWQVLDHELEVIESLGFPGYFLI 345 Query: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 V +++ +++G+ GRGS A S V YAL IT +D + +LFERFL+P R PD D Sbjct: 346 VRSIVEFCEESGIL-CQGRGSAANSAVCYALGITAVDAVRHKMLFERFLSPGRAGYPDID 404 Query: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 +D +R++VI+HV YGR +Q+ + ++ +RD R LG+P G D ++ I Sbjct: 405 LDIEACRREEVIQHVYTRYGRHRAAQVANVISYRPRSAVRDAARALGYPAGLQDAWARSI 464 Query: 464 PPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKIT 523 E + Q E D + ++D+A +L + R+ G H+GG+V+A +T Sbjct: 465 EHGWSR------EQDGQARE----DAVPEQVLDVADRLLRLPRHLGVHSGGMVLAAQPVT 514 Query: 524 DFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKR-------- 575 + P+ V Q+DK D AGLVKFD LGL LT + A + R Sbjct: 515 EVCPVRWAAMEGRSVLQWDKDDCAAAGLVKFDLLGLGMLTALRLAFTSLGDRGEKVPDLT 574 Query: 576 --------RAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDC 627 R P + +P +D + +LQ ++T VFQ+ESR + RL+P Sbjct: 575 SRQGDGILRPAQVGRPWGLHTLPEEDPAVYRLLQAADTIGVFQVESRAQMATLPRLRPRV 634 Query: 628 FEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQ 687 F D++ VAL RPGP+Q V+ +I R+ GREE Y H+ L+P LE T G+ L+Q Sbjct: 635 FYDIVVEVALIRPGPIQGDAVNPYIRRRLGREEPDY-----LHDLLRPALEKTLGVPLFQ 689 Query: 688 EQVMQIAQVLSGYTLGGADMLRRAMGKKKP-EEMAKQRSVFAEGAEKNGINAELAMKIFD 746 EQ+MQIA +G++ AD LR+AMG K+ E M EG ++ GI+ A +FD Sbjct: 690 EQLMQIAVDAAGFSPVEADALRQAMGAKRSVERMEALHLRLVEGMKERGISQGTAELVFD 749 Query: 747 LVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWR 806 + FA +GF +SH+ ++A + Y + WLK P +F A V+ A LV + R Sbjct: 750 KLRAFADFGFPESHAFSFAYLVYASAWLKVRRPEDFYAGVLAAQPMGFWSPQTLVADARR 809 Query: 807 MGLKILPPDINSGLYHFHVN-----------------------------DDGEIVYGIGA 837 G+++L D++ V D + G+ Sbjct: 810 HGVQVLAADVSHSEVQASVETVRPGAPSQACVGGAGEEASTALTHLDTHRDLAVRLGLAP 869 Query: 838 IKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAA 897 IKG+G E I+ R G +R++ DL R +L R+ LE L +GA LG R Sbjct: 870 IKGIGRELAERIVTERQSHGAYRDVADLARRV---RLGRKHLETLAAAGALASLGVSRRQ 926 Query: 898 LMNSLGDAL-KAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERET 956 + S G + H G + + Q + Sbjct: 927 ALWSAGVLADEHGRPHLGHRTGGDRTPWCQPPLPGTAVGSRAPDLPEMSAQERHVADLRL 986 Query: 957 LGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGI 1016 G+ HP+ +L+ G V + + G + AG+V + T G Sbjct: 987 TGVSTETHPLA-FLRTALAEDGVVEVVRVGQQGNGAQVRVAGVVTHRQRPYTAAGT--VF 1043 Query: 1017 CTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDID 1074 ++D +G L V+ + +Y+ + + ++V G V D G + A+ + ++ Sbjct: 1044 LNIEDETGLLNVICSSGMWKRYRHVGRRATAVVVWGVVESAD--GVTALRAQSLQGLE 1099 >UniRef50_B0T091 DNA polymerase III, alpha subunit n=1 Tax=Caulobacter sp. K31 RepID=B0T091_CAUSK Length = 1117 Score = 856 bits (2211), Expect = 0.0, Method: Composition-based stats. Identities = 262/1147 (22%), Positives = 481/1147 (41%), Gaps = 117/1147 (10%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M + L+ +++S + G + L+ ALG+ A+ + D +L G+V+ + A Sbjct: 1 MKTHAYAELQATTNFSFLRGASHAQELMLTGQALGLTAVGVADRNSLAGVVRAWTAAKDL 60 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 I+ + G + D L ++ + LT L++ +R + +D+ Sbjct: 61 KIRALTGCRLDFM-----DGAPSLLCYPSDREAFGRLTRLLTVGQRRAGKGECHLSWKDF 115 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 180 L E EG + L L A + R +L R + Sbjct: 116 L-EHAEGQLALIVP-----PARLDEAFEADLARIAGELR----GRVWLAASRAYAAQDLK 165 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 L +LA P+VATNDV + ++ I +G T+ + ++++ Sbjct: 166 RLSRLADLAREARAPMVATNDVLYHGPERRPLQDVMTCIREGCTITQAGFRLEANAERHI 225 Query: 241 RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTE-DYLVKRAKEG 299 ++ EM LF P+A+ T+EI +R + + P P T +L +G Sbjct: 226 KTPAEMARLFERWPQAVERTIEIVERIGFDLGDLKEQYPDEPVPPGKTAMQHLTDLTWQG 285 Query: 300 LEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVG 359 R P+ ++L EL++I +M +P YF+ V + + +++ G+ Sbjct: 286 AAWRYPNGV---------SPKVADQLREELRLIAKMDYPNYFITVHDIVHKAREMGIL-C 335 Query: 360 PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVA 419 GRGS A S V + L +T +DP E LLF RF++ R PD DVDF E+R++V+++V Sbjct: 336 QGRGSAANSSVCFCLGVTAIDPTEHRLLFTRFISENRGEPPDIDVDFEHERREEVMQYVY 395 Query: 420 DMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEP 479 YGR+ + T ++ IRDVG+ LG ++ + G L Sbjct: 396 KRYGREYAAICCTVIHYRPRSAIRDVGKALGLTEDITAILANTVWGSWGDGLPD---EHI 452 Query: 480 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 539 + + + ++ I +A +L R+ +H GG V+ ++ + P+ Sbjct: 453 KQTGLDPNNPQIARAIALATELLQHPRHLSQHVGGFVLTKRRLDETVPIGNAAMKDRTFI 512 Query: 540 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 599 ++DK D++ L+K D L L LT I A M+ RA +G+P D+A +P++ K +DM Sbjct: 513 EWDKDDIDSLKLMKVDILALGMLTAIQRAFGML---RADHGQPITDLADVPVEVKGVYDM 569 Query: 600 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 659 L +++ VFQ+ESR ++ RL+P+ F D++ VA+ RPGP+Q MV ++ R+ G E Sbjct: 570 LSVADSVGVFQVESRAQMSMLPRLKPNKFYDLVIEVAIVRPGPIQGDMVHPYLRRRQGLE 629 Query: 660 EISYPDVQWQH---ESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMG-KK 715 + +P +H + L+ +L T+G+ L+QEQ M +A + +T AD LR+AM K Sbjct: 630 KAEWPAPSPEHGHKDELREILGNTFGVPLFQEQAMSLAIEAAKFTPDEADGLRKAMATFK 689 Query: 716 KPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 775 + + R F EG + G + A + F +E F YGF +SH+A++A + Y + W+K Sbjct: 690 NLGDPGEYRDKFVEGMVRRGYERDFATRCFKQIEGFGSYGFPESHAASFAKLVYISAWIK 749 Query: 776 AHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVND-------- 827 +P F AA++ + + LV + G+++ PD+ + + Sbjct: 750 WAWPDVFCAALINSQPMGFYQPAQLVRDAREHGVEVRAPDVLMSDWDCTLEGVSIAQTST 809 Query: 828 --------------------------------------------DGEIVYGIGAIK---- 839 + + A++ Sbjct: 810 VIPDEAQRRSGTDPERRVSGGPGSSRSALVRDDRAFQPASDKLFNPDTRPFWKAVRLGLR 869 Query: 840 ---GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRA 896 G+ E + I E R +G R D +++R LE L + AF G R Sbjct: 870 QIKGLKEDDAKLIEEVRAEGA--RTPADFAR----AGVSQRGLELLAEADAFASAGLTRR 923 Query: 897 ALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERET 956 + ++ A ++A + +F + + + + T Sbjct: 924 DALWAVKGLKGEAKVDSQAPLLAGLPLFD-----------TAVALPTMALPQQVAEDYRT 972 Query: 957 LGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGI 1016 L L HP+ + +++ + + + G+ ++ GLV+ + T +G + Sbjct: 973 TSLSLKAHPLRFFRPMLDQ-LNVTPAERLKGVRNGRKVSVGGLVLIRQRPGTAKG--VVF 1029 Query: 1017 CTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEA 1076 TL+D +G +++ D D +++ + LIV G++ + G + + A D+ Sbjct: 1030 LTLEDETGVANAVVWKDCFDAHRRTVMSASFLIVHGKLQASE--GVIHVVAERFTDLSAE 1087 Query: 1077 REKYARG 1083 + Sbjct: 1088 LARLRES 1094 >UniRef50_B2SI43 Error-prone DNA polymerase n=31 Tax=Gammaproteobacteria RepID=DNAE2_XANOP Length = 1083 Score = 855 bits (2209), Expect = 0.0, Method: Composition-based stats. Identities = 274/1092 (25%), Positives = 490/1092 (44%), Gaps = 85/1092 (7%) Query: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 P + L SD+S + G + L +A G ALAITD +L G+V+ A G++ Sbjct: 46 PTYAELHCLSDFSFLRGASSAEQLFARAQHCGYSALAITDECSLAGIVRGLEASRVTGVR 105 Query: 64 PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIE 123 IVG++F + + T +L N GY + L++ A + A + D + Sbjct: 106 LIVGSEFTLI------DGTRFVLLVENAHGYPQVCGLVTTARRAASKGAYRLGRADVEAQ 159 Query: 124 LNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLH 183 + V L G ++ + ++ F +R FL + D+ + L Sbjct: 160 FRD--------VAPGVFALWLPGVQPQAEQGA-WLQQVFGERAFLAVELHREQDDGARLQ 210 Query: 184 AAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSE 243 LA+ G+ VA+ DV + + AI L + + ++++R+ Sbjct: 211 VLQALAQQLGMTAVASGDVHMAQRRERIVQDTLTAIRHTLPLAECGAHLFRNGERHLRTR 270 Query: 244 EEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMST-EDYLVKRAKEGLEE 302 + ++ D A V +A+RC + Y P+ + T YL + + G+ + Sbjct: 271 RALGNIYPDALLQAA--VALAQRCTFDISKISYTYPRELVPEGHTPTSYLRQLTEAGIRK 328 Query: 303 RLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGR 362 R + E +E EL +I + +FL V + ++++++ + GR Sbjct: 329 RWPGGI---------TAKVREDIEKELALIALKKYEAFFLTVQDVVRFAREQNIL-CQGR 378 Query: 363 GSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMY 422 GS A S V YAL IT ++P E LL RFL+ +R PD DVDF E+R++V+++V Y Sbjct: 379 GSSANSAVCYALGITAVNPDETRLLMARFLSEKRDEPPDIDVDFEHERREEVLQYVYRKY 438 Query: 423 GRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLP 482 GR+ + T K+ +RDV + G P + ++ G T E + Sbjct: 439 GRERAALAATVICYRGKSAVRDVAKAFGLPPDQIALLANCYGWGNGETP---MEQRIEEA 495 Query: 483 EIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFD 542 A+ + ++ + L R+ +H GG VI+ ++ P+ + Q+D Sbjct: 496 GFDLANPLINKILLVTEHLRDHPRHLSQHVGGFVISDEPLSLLVPVENAAMADRTIIQWD 555 Query: 543 KSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQR 602 K D+E L+K D L L LT I L+++ R ++ IA +P +D ++ M+QR Sbjct: 556 KDDLETMKLLKVDCLALGMLTCIRKTLDLVRGHRGRDY----SIATLPGEDLPTYKMIQR 611 Query: 603 SETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEIS 662 ++T VFQ+ESR ++ RL+P F D++ VA+ RPGP+Q MV ++ R+ GRE++S Sbjct: 612 ADTVGVFQIESRAQMAMLPRLKPAEFYDLVIEVAIVRPGPIQGDMVHPYLRRRQGREDVS 671 Query: 663 YPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK-KKPEEMA 721 YP +++ +L+PT G+ L+QEQVM++ + YT AD LRR+M ++ +M Sbjct: 672 YPS-----PAVEDILKPTLGVPLFQEQVMELLMHAADYTESEADNLRRSMAAWRRGGDME 726 Query: 722 KQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAE 781 + R+ E + G + +IF+ ++ F YGF +SH+A++A + Y + WLK H PA Sbjct: 727 QHRTRVRERMQGKGYASTFIDQIFEQIKGFGSYGFPQSHAASFAKLVYASCWLKRHEPAA 786 Query: 782 FMAAVMTADMDNTEKVVGLVDECW-----RMGLKILPPDINSGLYHFH------------ 824 F ++ A +V + R +++LP D+ + Sbjct: 787 FACGLLNAQPMGFYSASQIVQDARRGSPERERVEVLPVDVVHSDWDNTLVGGRPWRSAAD 846 Query: 825 VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884 + I G+ + G+ + + I+ AR + F ++ DLC R L+ + L Sbjct: 847 PGEQPAIRLGMRQVAGLSDVVAQRIVAARTQR-AFADIGDLCLRA---ALDEKARLALAE 902 Query: 885 SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944 +GA + +R A A+ + + G E P E +A Sbjct: 903 AGALQGMVGNRNAARW----AMAGVEARRPL-------LPGSPEERPVAFEAPHAG---- 947 Query: 945 PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004 + +L + ++GL L HP+ ++ R + L+D+ G + AGLV + Sbjct: 948 --EEILA-DYRSVGLSLRQHPMALLRPQM-RQRRILGLRDLQGRPHGSGVHVAGLVTQRQ 1003 Query: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLK 1064 T +G TL+D G + V++++ + ++ L + R+L V G+ ++ G Sbjct: 1004 RPATAKGT--IFVTLEDEHGMINVIVWSHLALRRRRALLESRLLAVRGR--WERVDGVEH 1059 Query: 1065 MTAREVMDIDEA 1076 + A ++ D+ + Sbjct: 1060 LIAGDLHDLSDL 1071 >UniRef50_C5CQX7 DNA polymerase III, alpha subunit n=2 Tax=Comamonadaceae RepID=C5CQX7_VARPS Length = 1118 Score = 854 bits (2206), Expect = 0.0, Method: Composition-based stats. Identities = 295/1135 (25%), Positives = 512/1135 (45%), Gaps = 107/1135 (9%) Query: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG-- 59 + P + L S++S G + LV++A LG ALAITD ++ G+V+ + Sbjct: 31 TLPDYAELHCLSNFSFQRGASTPEELVERAYQLGYTALAITDECSVAGIVRAHVCLRDLP 90 Query: 60 -------------------AGIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLL 100 G + + G++F E L V+A G+ NL Sbjct: 91 AKLEEYEREHPGEPPLPRNPGFRLLFGSEFRF-------ERFRLVVIANGTEGWGNLCEF 143 Query: 101 ISKAYQRGYGAAGPIIDRD--WLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFY 158 I+ A + + + L + +L R + G ++ ++A + E + Sbjct: 144 ITAARNTELPKGEYRVSWEHSDVASLQDCQVLFVPHR--EPGAAV---DAATLHEDLLAA 198 Query: 159 EEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVA 218 + + +L + D++ + A ++ E G+P+VA DV S H++ A Sbjct: 199 KALYAGNLWLAVEMLNELDDDLWFAALMQAGEQTGVPLVAAGDVHMHARSAKPLHDVLTA 258 Query: 219 IHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRL--GEY 276 + +G T+ + + ++++R + EL+ +P LANT+ +A+RC + Y Sbjct: 259 VREGKTVAECGFALQSNAERHLRQRVRLAELY--LPRMLANTLVVAERCRFDPEVIRENY 316 Query: 277 FLPQFPTGD-MSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQM 335 P G + + LV++ EG + R PD+ +LE EL +I +M Sbjct: 317 KYPLETVGSSETPAETLVRKTWEGAQVRFPEGIPDK---------VRAQLEKELALIVEM 367 Query: 336 GFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPE 395 + +FL V + +++++ + GRGS A S V Y L IT ++P + LLFERFL+ Sbjct: 368 KYEMFFLTVEDIVRFARSQSIL-CQGRGSSANSAVCYCLGITAINPEKGHLLFERFLSRH 426 Query: 396 RVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGF 455 R PD DVDF ++R++VI+++ YGR+ + A++ +RDVG+ +G Sbjct: 427 RHEPPDIDVDFEHQRREEVIQYIYQKYGRERAAIAAVVICYRARSALRDVGKAMGIDERL 486 Query: 456 VDRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGV 515 +D +K L + + E + ++ I+M R+L+G R+ +H GG Sbjct: 487 IDEFAKDHYWFDDTVLGEQLFKAAARVGVQEDELKLVQWIEMTRRLKGFPRHLSQHVGGF 546 Query: 516 VIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKR 575 V+ T++T P+ V Q++K D+E G++K D L L L+ I L+ +N+ Sbjct: 547 VLTHTRLTRLVPVEKASMKDRSVIQWEKDDLEAMGMLKVDVLALGMLSAIRRGLDHMNRW 606 Query: 576 RAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALV 635 R + + IP DD+K FDM+ ++T VFQ+ESR ++ RL+P C+ED++ V Sbjct: 607 RGSMVQ----MHHIPNDDQKVFDMICDADTIGVFQIESRAQMSMLPRLKPRCYEDLVIEV 662 Query: 636 ALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQ 695 A+ RPGP+Q GMV ++ ++ ++ ++ E LKP LE T GI ++QEQVMQIA Sbjct: 663 AIVRPGPIQGGMVHPYLKQR--ERVAKGLEIHYEKEELKPALERTLGIPIFQEQVMQIAM 720 Query: 696 VLSGYTLGGADMLRRAMGK-KKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGY 754 + + +T AD LRRAM K+ + K +G +G AE A IF + F Y Sbjct: 721 IAARFTADEADQLRRAMAAWKRKGGLEKFHHKLVKGMTDHGYKAEFAEAIFKQILGFGDY 780 Query: 755 GFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPP 814 GF +SH+A++AL+ + WLK + PA F+AA++ + LV + R G+++ P Sbjct: 781 GFPESHAASFALLVTVSSWLKNYEPACFLAALLDSQPMGFYSPSQLVQDARRHGVEVRPA 840 Query: 815 DINSGLYHFHV------------------------NDDGEIVYGIGAIKGVGEGPIEAII 850 D+ + + + G+ I + + + ++ Sbjct: 841 DVTCSDIDTTLEARAPDAPRMPPGTDARYADRLGRENQPAVRLGLNRISSLSKEGAKRLL 900 Query: 851 EARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAAD 910 EAR + F DL R + L+ + + L + A L HR + Sbjct: 901 EARAQA-PFTSTEDLALRAE---LDGKDMAALAAADALMSLSGHRRQQVW---------- 946 Query: 911 QHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYL 970 A A+ A + GV EP PE + G+ LGL L HP+ Sbjct: 947 -DATAQRRSPALLKGVPINEP------VLQLPAAPEGEEIVGDYAALGLTLRRHPLALLR 999 Query: 971 KEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVML 1030 + R + + + + G+ + A G+V + T G TL+D +G + V++ Sbjct: 1000 PRLAR-MKLMSAEQLRAQPSGQTVRACGIVKGRQRPGTANGT--IFVTLEDETGNVNVIV 1056 Query: 1031 FTDALDKYQQLLEKDRILIVSGQVSFDDFSGGL--KMTAREVMDIDEAREKYARG 1083 ++ ++ +++ L K +L V G DD SGG + A D+ + A+ Sbjct: 1057 WSHVIEAWREPLLKSHLLAVQGTWQRDDDSGGKVQHLIATGFKDLTPLMGRLAQS 1111 >UniRef50_B4W721 DNA polymerase III, alpha subunit subfamily, putative n=4 Tax=cellular organisms RepID=B4W721_9CAUL Length = 1121 Score = 849 bits (2194), Expect = 0.0, Method: Composition-based stats. Identities = 274/1142 (23%), Positives = 474/1142 (41%), Gaps = 102/1142 (8%) Query: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGA----- 56 S P + L S++S + G + LV A G L + D + G+V+ + A Sbjct: 6 SPPAYAELAAASNFSFLRGASHPKSLVLSAILRGHTGLGLADRNTVAGVVRAWSALNTLR 65 Query: 57 ------------------------------------GHGAGIKPIVGADFNVQCDLLGDE 80 + + GA D Sbjct: 66 VEGLSPPEKVRDGGGPGETGFVEDLMNDPALSDMVEARAQDFRLLTGARL-----AFNDG 120 Query: 81 LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVG 140 + A + G+ LT L++ +R I D L G G + Sbjct: 121 TPDIIAYAEDRAGWGRLTRLLTLGNRRAVKGQCEIGISDLL-----------GDPEGLLL 169 Query: 141 RSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATN 200 + + + ++ E P +L + D+ L +A +P++A N Sbjct: 170 IVIPERHLEALPPLLSRLEAAAPGSVWLSAAMLRQGDDRRRLTRLKAIANVADVPLLAIN 229 Query: 201 DVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANT 260 DV + D S+ D ++ I +G T++ R + +++++ EM LFAD PEAL T Sbjct: 230 DVLYHDPSERDLQDVLTCIREGVTIEAAGRRLLANAERHLKPPAEMARLFADAPEALEQT 289 Query: 261 VEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKRAKEGLEERLAFLFPDEEERLKRRP 319 + R ++ Y PQ PT S++ YL + R Sbjct: 290 QLLLDRARFDLKDLTYNYPQEPTPPGWSSQAYLEDLTWRHAQIRYPGGV---------SA 340 Query: 320 EYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDL 379 + + L EL I GF YFL + + ++ + G+ GRGS A S V Y L IT + Sbjct: 341 KVTDLLNKELAFIQIQGFAPYFLTIHDIVRVANSKGIL-CQGRGSAANSAVCYVLGITCV 399 Query: 380 DPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAK 439 DP E DLLFERFL+ R PD DVDF E+R+++I+H+ D YGR T K Sbjct: 400 DPAENDLLFERFLSDHRGEPPDIDVDFEHERREEIIQHIYDRYGRHRAGIAATVIRYRPK 459 Query: 440 AVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMAR 499 + IR+VG+VLG R++ G + + + A+ + + MA Sbjct: 460 SAIREVGKVLGLTEDVTARLAASQWGSWGAEIGDC---HVEQAGLDPANPMIGRAVAMAS 516 Query: 500 KLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGL 559 +L G R+ +H GG ++ ++ + P+ ++DK D++ L+K D L L Sbjct: 517 RLLGFPRHLSQHVGGFILTQDRLDELVPIGNAAMPDRTFIEWDKDDIDDLRLMKVDVLAL 576 Query: 560 RTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDL 619 LT I AL +++ + ++ +P + +DML + ++ VFQ+ESR ++ Sbjct: 577 GMLTCIRKALNLMHAH----DDAAYELHTVPNEQADVYDMLCKGDSIGVFQVESRAQINM 632 Query: 620 IKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQH--ESLKPVL 677 + RL+P F D++ VA+ RPGP+Q MV ++ R+ EE Y H + LK VL Sbjct: 633 LPRLKPRTFYDLVIQVAIVRPGPIQGDMVHPYLRRRAKLEEPEYSKPAPPHDPDELKKVL 692 Query: 678 EPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE-EMAKQRSVFAEGAEKNGI 736 T G+ L+QEQ M++A V + +T A+ LR+AMG + + + K + G Sbjct: 693 HKTLGVPLFQEQAMKVAMVAAEFTPKEANGLRKAMGTFRGDGTLWKYEGRMVNRMVERGY 752 Query: 737 NAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEK 796 + A + FD ++ F YGF +SH+A++ + Y + ++K YPA F A++ + Sbjct: 753 ERDFAQRCFDQIKGFGSYGFPESHAASFGKLVYISSFIKCRYPAAFACALLNSQPMGFYA 812 Query: 797 VVGLVDECWRMGLKILPPDINSGLYHFHVNDDG---EIVYGIGAIKGVGEGPIEAIIEAR 853 +V + G++I P D+N + + + G I G E +A++ AR Sbjct: 813 PAQIVRDAQEHGVEIRPIDVNLSDWDNTLEGPPGLLALRLGFRQIDGFREEWAKALVVAR 872 Query: 854 NKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHA 913 ++ F + L R + KL + AF +G R + ++ A Sbjct: 873 SRS--FEGVEALAGRASLPG---SAMRKLADADAFRSIGMDRREALWAVRRLPDDAP--- 924 Query: 914 KAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEI 973 +F A+ E E+ A + + +T L L HP+ L+ I Sbjct: 925 -------LPLFAA-ADARELGEEDDARLPRMALGEHVAADYQTTRLSLKAHPMA-ILRPI 975 Query: 974 ERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTD 1033 + ++ G + AG+V+ + +GN I TL+D +G ++L+ Sbjct: 976 FAAENTLTCAELETRRSGAKVRTAGVVLVRQRPG--KGNAI-FITLEDETGVTNLVLWAR 1032 Query: 1034 ALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQI 1093 ++Y++++ R++ V G V G + + V D ++ + +T + Sbjct: 1033 MFEEYRRVVMAARLMGVEGVVEKSP-EGVVHLMTHRVFDRSAELDRLSDANTTEITPSRA 1091 Query: 1094 DD 1095 D+ Sbjct: 1092 DE 1093 >UniRef50_Q5LVN0 Error-prone DNA polymerase n=30 Tax=Proteobacteria RepID=DNAE2_SILPO Length = 1101 Score = 848 bits (2191), Expect = 0.0, Method: Composition-based stats. Identities = 274/1109 (24%), Positives = 481/1109 (43%), Gaps = 100/1109 (9%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 + L V ++++ + G + ++ +AA LG+ A+AITD +L G+V+ Y A + Sbjct: 3 YAELCVTTNFTFLTGASHPEEMITRAAELGLHAIAITDRNSLAGVVRAYAALKELRREAD 62 Query: 66 VGADFNVQCD--------------------------------LLGDELTHLTVLAANNTG 93 Q +L D H L + Sbjct: 63 EAIRIRSQHRIDSCSRQEVGHPQPIARPEAPRLPRLITGCRLVLRDSPLHWIALPRDRAA 122 Query: 94 YQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDE 153 YQ LT L++ +R + D L G G + +L +G Sbjct: 123 YQRLTRLLTLGKRRAEKGDCHLDLADLL-----------AGCTGMILIALPQGRLDGALP 171 Query: 154 CVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAH 213 + + FP FL ++++L A LA P+VA D ++ Sbjct: 172 HLQQVQRRFPGHVFLGAAPRYDGSDQAWLAACARLALRSSAPMVAVGDALMHRANRRQLA 231 Query: 214 EIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRL 273 ++ + + T+D + ++ ++ +M LF D P AL T++IA RC+ + Sbjct: 232 DVLTCMREHITIDRIGTRALPNAERRLKGHADMARLFRDHPAALRRTLDIAARCSFCLSE 291 Query: 274 GEYFLPQFPTGDMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVIN 333 Y P + + L + EG+ R P E + EL+++ Sbjct: 292 LSYEYPDEVAEGETPQARLERLTAEGIVRRYPGGAPQR---------VHELVAKELKLVA 342 Query: 334 QMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLN 393 ++GFP YFL V + +Q+++ G+ GRGS A S++ Y L ITD+ P + ++FERF++ Sbjct: 343 ELGFPAYFLTVHDIVQFARSQGIL-CQGRGSAANSILCYLLGITDVSPDQIAMVFERFIS 401 Query: 394 PERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPY 453 R PD DVDF E+R++VI+ + YGR T ++A IR+VG+V+G Sbjct: 402 KYRGEPPDIDVDFEHERREEVIQWIYQRYGRHRAGLCATVIHFRSRAAIREVGKVMGLSQ 461 Query: 454 GFVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEVKAL---IDMARKLEGVTRNAGK 510 +S I A+P+ D E + L I + ++ G R+ + Sbjct: 462 DVTASLSGQIWGQSNGG------ADPERMRELGLDPEDRRLALTIRLIGEIIGFPRHLSQ 515 Query: 511 HAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALE 570 H GG VI ++ + AP+ + ++DK D++ G++K D LGL LT I A + Sbjct: 516 HVGGFVITRGRLDELAPIENAAMEDRTLIEWDKDDIDTLGILKVDVLGLGMLTCIRKAFD 575 Query: 571 MINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFED 630 ++ + ++ L I +P +D ++DML ++ VFQ+ESR + + R++P F D Sbjct: 576 LMREHEQRH----LSIDTVPQEDAATYDMLCAADAVGVFQVESRAQMNFLPRMRPRTFYD 631 Query: 631 MIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQV 690 ++ VA+ RPGP+Q GMV +I R+ G E+ + L V T G+ L+QEQ Sbjct: 632 LVIEVAIVRPGPIQGGMVQPYIRRRQGLEK-----AEPFGPELAAVTARTLGVPLFQEQA 686 Query: 691 MQIAQVLSGYTLGGADMLRRAM-GKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVE 749 +QIA V +GYT AD LRR++ ++ + R F G +NG + E+A + F +E Sbjct: 687 LQIAVVGAGYTAEEADHLRRSLASFRRMGTIGAHRDTFIAGMRRNGYSQEVAERCFGQIE 746 Query: 750 KFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGL 809 FA YGF +SH+AA+A+++Y + WLK H+PA F A++ A +V + + Sbjct: 747 GFADYGFPESHAAAFAMLAYVSAWLKCHHPAIFACALLNAQPMGFYAPAQIVRDARDHQV 806 Query: 810 KILPPDINSGLYHFHVNDDG----EIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDL 865 ++ P +N+ + + + G IKG E I+ AR G + + L Sbjct: 807 ELRPICVNASDWDNRLERRADGALALRLGFRQIKGFREEDAAWIVAARGNG--YPDPQAL 864 Query: 866 CARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFG 925 R VLE+L + AF +G R + + +F Sbjct: 865 WLRAGVTP---AVLERLAEADAFADMGIGRRDALWQVRAI----------RGQAPLPLFN 911 Query: 926 VLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDM 985 + E I + + + + ++ L L HP+ I +L + Sbjct: 912 DPLD-GEIIHEPQVTLPAMHLGEEVVEDYVSMRLTLRAHPMELLRPAIPGLTPHDKLASV 970 Query: 986 HPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKD 1045 ++ GLV+ + T G + TL+D +G V+++ +++++++ Sbjct: 971 AAHR----VSVCGLVITRQRPGTASG--VIFLTLEDETGVSNVVVWPKIYEQFRRIVMGG 1024 Query: 1046 RILIVSGQVSFDDFSGGLKMTAREVMDID 1074 R+L V+G + + + + A+ + D+ Sbjct: 1025 RLLRVTGTLQRE--GIVVHLIAQRIEDLS 1051 >UniRef50_C9NCC1 DNA polymerase III, alpha subunit n=19 Tax=Streptomyces RepID=C9NCC1_9ACTO Length = 1161 Score = 846 bits (2186), Expect = 0.0, Method: Composition-based stats. Identities = 315/1197 (26%), Positives = 516/1197 (43%), Gaps = 121/1197 (10%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F HL S +S+ G + L ++AA GM ALA+TD +L G V+F A G++PI Sbjct: 4 FTHLHTVSGFSLRYGASHPERLAERAAGRGMDALALTDRDSLSGAVRFARACEKEGVRPI 63 Query: 66 VGADFNVQCDL------------------LGDELTHLTVLAANN-TGYQNLTLLISKAYQ 106 G + V + + + +T LA + G+ L L++ A+ Sbjct: 64 FGTELAVAPQVTEGAPAHRPRTPARGGAFVDESAPRVTFLARDGARGWAELCRLVTAAHS 123 Query: 107 RG--YGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPD 164 GA P+ RD L EGL +L G +VG +L G + + E + D Sbjct: 124 GAADRGAGRPLAGRDALP--AEGLTVLLGP-ASEVGAALAAGRPDRAAALLVPWREIYGD 180 Query: 165 RYFLELIRTGR----PDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIH 220 LE + GR P V A +G+ V TN VR+ D ++ + Sbjct: 181 ALRLEAVHHGREGTGPGSLRLAARTVGFAAEQGVRAVLTNAVRYADPGQGPVADVLDSAR 240 Query: 221 DGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEA-----------LANTVEIAKRCNV 269 + DP+R S +++++ + M I A LA T A C V Sbjct: 241 RLVPV-DPRRTPLDSGERWLKDDAAMRGTAERIASAAGLGRGAGERLLAETRHTADACRV 299 Query: 270 T----VRLGEYFLPQ---FPTGDMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYD 322 + LG P+ + + L RA G+ RR +Y Sbjct: 300 DPARDLGLGSVHFPEPRLVGAERRTAQRVLATRAAAGMVR----------HGYDRRRDYW 349 Query: 323 ERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPL 382 ER+ EL +I GF YFL V + + K G+ V RGSGAGSLV + L I DP+ Sbjct: 350 ERMHRELDIIAHHGFATYFLTVSQVVDDVKGMGIRVA-ARGSGAGSLVNHLLGIAHADPI 408 Query: 383 EFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVI 442 E LL ERFL+ R +PD DV +R +V + D +G + V+ + T + I Sbjct: 409 EHGLLMERFLSKRRFVLPDIDV--ESARRLEVYRAIIDRFGTERVAAVSMPETYRVRHAI 466 Query: 443 RDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLE 502 RDVG L DR++K P A E P+L + + E+ L D+ L+ Sbjct: 467 RDVGAALSMDPAETDRLAKAFPHIRARDARAAMEELPELRAVAGSKEKYGRLWDLVESLD 526 Query: 503 GVTRNAGKHAGGVVIAPTKITDFAPLYC----------DEEGKHPVTQFDKSDVEYAGLV 552 + R H GV+++ + P+ P++QFDK DVE+ GL+ Sbjct: 527 ALPRGIAMHPCGVLLSDDSLLRRTPVVPTSGEIPSLDGGGGSPIPMSQFDKDDVEHLGLL 586 Query: 553 KFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLE 612 K D LG+R + + A+ + + + LD+ A+P D +++ +++ +ET FQ+E Sbjct: 587 KLDVLGVRMQSAMAHAVTELKRASGQE----LDLDAVPQGDPETYRLIRDAETLGCFQIE 642 Query: 613 SRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHES 672 S G +DL+ RLQP F D++ ++LFRPGP+ + MV FI+ +HGR + YP H Sbjct: 643 SPGQRDLVGRLQPATFHDLVVDISLFRPGPVAADMVRPFIEARHGRAPVRYP-----HPD 697 Query: 673 LKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAE 732 L+ L TYG++++ EQ++++ +++G G AD +RR + PE A+ R FA A Sbjct: 698 LEGALRDTYGVVVFHEQIIEMVNIMTGCGRGEADRVRRGLS--DPESQARIRVWFARRAA 755 Query: 733 KNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMD 792 + +A++ ++ ++++E F YGF K+H+ A+A+ +YQ+ WLKAH+PA F A ++T D Sbjct: 756 QRKYDAQVIVRAWEIIEAFGSYGFCKAHAVAFAVPTYQSAWLKAHHPAAFYAGLLTHDPG 815 Query: 793 NTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN-------DDGEIVYGIGAIKGVGEGP 845 K + L+ + R G+ +LP D+N + + + + + G+ E Sbjct: 816 MYPKRL-LLADARRRGVPVLPLDVNRSAAAHRIELVSGGKGEKWGLRLALSDVHGISEAE 874 Query: 846 IEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDA 905 + I G + L D R + + E+L GA D G +R L+ L + Sbjct: 875 VARI----ESGQPYSSLLDFWQRA---RPGKPAAERLAQVGALDSFGANRRDLLLHLSEL 927 Query: 906 LKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHP 965 +A + A Q + G + L E L L ++ H Sbjct: 928 HRAQRRSGSGAAGAQLPLGG-------GHRTGSVGLPDLNDAERLSAELGVLSLDVSRHL 980 Query: 966 INQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGR 1025 + + +E +G V K + G+ + AG VA + + G R+ TLDD +G Sbjct: 981 MGDHHGFLEE-LGAVSAKRLREARHGETVLVAGAKVATQTPPVRSGRRVIFTTLDDGTGL 1039 Query: 1026 LEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLA 1085 +++ F D+ + +L+V G V + + ++ E E Sbjct: 1040 VDLAFFDDSHAACAHTVFHSWLLLVRGVVQ-RRGPRSMSVVGAVAWNLAELAE------- 1091 Query: 1086 ISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRL 1142 L D + RL + + D R++ + ++P L Sbjct: 1092 --LRSTGGLDAVAARLAEEPAAQEGEE-------EAPDDGRRIQLPTGYEMNPWSDL 1139 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q8X8X5 DNA polymerase III subunit alpha n=288 Tax=cellu... 1473 0.0 UniRef50_P52022 DNA polymerase III subunit alpha n=118 Tax=Gamma... 1424 0.0 UniRef50_A1AQQ6 DNA polymerase III, alpha subunit n=12 Tax=Delta... 1369 0.0 UniRef50_A4J6X6 DNA polymerase III catalytic subunit, DnaE type ... 1364 0.0 UniRef50_Q9HXZ1 DNA polymerase III subunit alpha n=46 Tax=Gammap... 1363 0.0 UniRef50_B5E8T0 DNA polymerase III, alpha subunit n=6 Tax=Deltap... 1358 0.0 UniRef50_C9KIR5 DNA polymerase III, alpha subunit n=1 Tax=Mitsuo... 1335 0.0 UniRef50_D0LJI6 DNA polymerase III, alpha subunit n=1 Tax=Halian... 1332 0.0 UniRef50_C5BQZ9 DNA polymerase III, alpha subunit n=10 Tax=Gamma... 1331 0.0 UniRef50_Q2Z0E7 DNA polymerase III, alpha subunit n=1 Tax=uncult... 1328 0.0 UniRef50_B0TI36 DNA polymerase iii alpha subunit, putative n=1 T... 1326 0.0 UniRef50_Q1D042 DNA polymerase III, alpha subunit n=1 Tax=Myxoco... 1325 0.0 UniRef50_C6BS12 DNA polymerase III, alpha subunit n=4 Tax=Desulf... 1319 0.0 UniRef50_C0Z7W1 DNA polymerase III alpha subunit n=1 Tax=Breviba... 1319 0.0 UniRef50_B6FXS8 Putative uncharacterized protein (Fragment) n=1 ... 1316 0.0 UniRef50_A3EVF9 DNA polymerase III, alpha subunit n=3 Tax=Leptos... 1316 0.0 UniRef50_B5YEZ7 DNA polymerase III alpha subunit n=2 Tax=Dictyog... 1315 0.0 UniRef50_D2RIQ1 DNA polymerase III, alpha subunit n=3 Tax=Veillo... 1314 0.0 UniRef50_Q2LTT3 DNA polymerase III alpha subunit n=3 Tax=Deltapr... 1314 0.0 UniRef50_Q67RP9 DNA polymerase III alpha subunit n=4 Tax=Clostri... 1312 0.0 UniRef50_B3DUG0 DNA polymerase III, alpha subunit n=1 Tax=Methyl... 1304 0.0 UniRef50_A8ZSF2 DNA polymerase III, alpha subunit n=6 Tax=Deltap... 1302 0.0 UniRef50_Q1IN02 DNA polymerase III, alpha subunit n=2 Tax=Acidob... 1302 0.0 UniRef50_Q2S3X0 DNA polymerase III, alpha subunit n=1 Tax=Salini... 1302 0.0 UniRef50_D1BNX7 DNA polymerase III, alpha subunit n=3 Tax=Veillo... 1300 0.0 UniRef50_C0QG07 DnaE n=1 Tax=Desulfobacterium autotrophicum HRM2... 1299 0.0 UniRef50_C9XRY5 DNA polymerase III alpha subunit n=38 Tax=Clostr... 1296 0.0 UniRef50_B5EQR5 DNA polymerase III, alpha subunit n=4 Tax=Bacter... 1295 0.0 UniRef50_Q1MRR3 DNA polymerase III, alpha subunit n=3 Tax=Desulf... 1290 0.0 UniRef50_C6J6J2 DNA polymerase III (Fragment) n=4 Tax=Bacteria R... 1287 0.0 UniRef50_C1F714 DNA polymerase III, alpha subunit n=1 Tax=Acidob... 1285 0.0 UniRef50_B8D1J8 DNA polymerase III catalytic subunit, DnaE type ... 1275 0.0 UniRef50_C1SP26 DNA polymerase III, alpha subunit n=1 Tax=Denitr... 1275 0.0 UniRef50_D1B9W1 DNA polymerase III, alpha subunit n=3 Tax=Synerg... 1273 0.0 UniRef50_Q3Z6I2 DNA polymerase III, alpha subunit n=5 Tax=Dehalo... 1272 0.0 UniRef50_Q1PZM1 Similar to DNA polymerase III, alpha subunit n=1... 1272 0.0 UniRef50_B5YIK8 DNA polymerase III alpha subunit n=1 Tax=Thermod... 1271 0.0 UniRef50_UPI00017463A7 DNA polymerase III, alpha subunit n=1 Tax... 1270 0.0 UniRef50_C1DXC6 DNA polymerase III subunit alpha n=3 Tax=Sulfuri... 1267 0.0 UniRef50_C4Z382 DNA polymerase III subunit alpha n=1 Tax=Eubacte... 1266 0.0 UniRef50_A0PYC7 DNA polimerase III, alpha chain n=22 Tax=Bacteri... 1266 0.0 UniRef50_B8FTK4 DNA polymerase III, alpha subunit n=2 Tax=Desulf... 1266 0.0 UniRef50_D1C3B9 DNA polymerase III, alpha subunit n=1 Tax=Sphaer... 1265 0.0 UniRef50_Q8K9S3 DNA polymerase III subunit alpha n=4 Tax=Enterob... 1262 0.0 UniRef50_B9XPL1 DNA polymerase III, alpha subunit n=1 Tax=bacter... 1262 0.0 UniRef50_B2TQR7 DNA polymerase III subunit alpha n=23 Tax=Clostr... 1261 0.0 UniRef50_D2R3M9 DNA polymerase III, alpha subunit n=4 Tax=Planct... 1260 0.0 UniRef50_A0LCM6 DNA polymerase III, alpha subunit n=1 Tax=Magnet... 1257 0.0 UniRef50_Q1AX16 DNA polymerase III catalytic subunit, DnaE type ... 1253 0.0 UniRef50_C5V5V8 DNA polymerase III, alpha subunit n=2 Tax=Gallio... 1252 0.0 UniRef50_B9KZ27 DNA polymerase III alpha subunit n=1 Tax=Thermom... 1250 0.0 UniRef50_Q0F0W7 Putative uncharacterized protein n=2 Tax=root Re... 1250 0.0 UniRef50_B1C7S2 Putative uncharacterized protein n=1 Tax=Anaerof... 1247 0.0 UniRef50_B0S231 DNA polymerase III alpha subunit n=3 Tax=Clostri... 1245 0.0 UniRef50_C1A6B9 DNA polymerase III alpha subunit n=1 Tax=Gemmati... 1245 0.0 UniRef50_C8ND72 DNA polymerase III, alpha subunit n=1 Tax=Cardio... 1245 0.0 UniRef50_Q3AVK2 DNA polymerase III, alpha subunit n=11 Tax=Cyano... 1244 0.0 UniRef50_Q9XDH5 DNA polymerase III subunit alpha n=6 Tax=Bacteri... 1243 0.0 UniRef50_A6G5Y5 DNA polymerase III, alpha subunit n=1 Tax=Plesio... 1243 0.0 UniRef50_D1CB25 DNA polymerase III, alpha subunit n=1 Tax=Thermo... 1243 0.0 UniRef50_Q87EY0 DNA polymerase III subunit alpha n=22 Tax=Gammap... 1243 0.0 UniRef50_C7H0A9 DNA polymerase III, subunit alpha n=1 Tax=Eubact... 1243 0.0 UniRef50_B5Y9K9 DNA polymerase III subunit alpha n=1 Tax=Coproth... 1242 0.0 UniRef50_D1Y4Y5 DNA polymerase III, alpha subunit n=1 Tax=Pyrami... 1241 0.0 UniRef50_C4ZGM2 DNA polymerase III, alpha subunit n=7 Tax=Bacter... 1241 0.0 UniRef50_A7HG87 DNA polymerase III, alpha subunit n=4 Tax=Anaero... 1240 0.0 UniRef50_C6D8C3 DNA polymerase III, alpha subunit n=5 Tax=Firmic... 1236 0.0 UniRef50_C3WEY7 DNA polymerase III alpha subunit n=1 Tax=Fusobac... 1235 0.0 UniRef50_A9GWC5 DNA polymerase III, alpha subunit n=1 Tax=Sorang... 1233 0.0 UniRef50_Q9JVX8 DNA polymerase III subunit alpha n=201 Tax=cellu... 1233 0.0 UniRef50_A5GTL9 DNA polymerase III alpha subunit n=20 Tax=cellul... 1232 0.0 UniRef50_O34623 DNA polymerase III subunit alpha n=111 Tax=Bacte... 1232 0.0 UniRef50_Q055U5 DNA-directed DNA polymerase, alpha subunit n=6 T... 1231 0.0 UniRef50_B2KB15 DNA polymerase III, alpha subunit n=1 Tax=Elusim... 1230 0.0 UniRef50_A1ZEC3 DNA polymerase III alpha subunit n=2 Tax=Bactero... 1230 0.0 UniRef50_C7MKU1 DNA-directed DNA polymerase III PolC n=1 Tax=Cry... 1229 0.0 UniRef50_C7RGV3 DNA polymerase III, alpha subunit n=4 Tax=Clostr... 1228 0.0 UniRef50_D0SVP0 DNA polymerase subunit III n=3 Tax=Gammaproteoba... 1227 0.0 UniRef50_O67125 DNA polymerase III subunit alpha n=4 Tax=Aquific... 1225 0.0 UniRef50_O83675 DNA polymerase III subunit alpha n=5 Tax=Trepone... 1225 0.0 UniRef50_Q11YX8 DNA polymerase III, alpha subunit n=3 Tax=Bacter... 1219 0.0 UniRef50_B5VUX8 DNA polymerase III, alpha subunit n=2 Tax=Arthro... 1219 0.0 UniRef50_B2UNA1 DNA polymerase III, alpha subunit n=1 Tax=Akkerm... 1218 0.0 UniRef50_B0VJC8 DNA polymerase III, alpha subunit n=1 Tax=Candid... 1217 0.0 UniRef50_C6JJK2 DNA-directed DNA polymerase III alpha subunit n=... 1216 0.0 UniRef50_A0YQD0 DNA polymerase III subunit alpha n=1 Tax=Lyngbya... 1215 0.0 UniRef50_D1KB28 DNA polymerase III, alpha subunit n=1 Tax=uncult... 1214 0.0 UniRef50_O51526 DNA polymerase III subunit alpha n=25 Tax=Borrel... 1213 0.0 UniRef50_Q6FAL5 DNA polymerase III, alpha chain n=16 Tax=Acineto... 1212 0.0 UniRef50_D1NB43 DNA polymerase III, alpha subunit n=1 Tax=Victiv... 1212 0.0 UniRef50_B8GWS6 DNA polymerase III subunit alpha n=75 Tax=Alphap... 1209 0.0 UniRef50_A5EV47 DNA polymerase III, alpha subunit n=1 Tax=Dichel... 1208 0.0 UniRef50_A6CCN9 DNA polymerase III alpha subunit n=1 Tax=Plancto... 1207 0.0 UniRef50_B0MN02 Putative uncharacterized protein n=1 Tax=Eubacte... 1206 0.0 UniRef50_C5EYF1 DNA polymerase III alpha subunit n=3 Tax=Helicob... 1206 0.0 UniRef50_Q6MLD4 DnaE protein n=1 Tax=Bdellovibrio bacteriovorus ... 1205 0.0 UniRef50_A1AX67 DNA polymerase III, alpha subunit n=2 Tax=sulfur... 1204 0.0 UniRef50_UPI0001C3188F DNA polymerase III, alpha subunit n=1 Tax... 1202 0.0 UniRef50_C7M0P6 DNA polymerase III, alpha subunit n=1 Tax=Acidim... 1199 0.0 UniRef50_D0WG97 DNA polymerase III, alpha subunit n=1 Tax=Slacki... 1199 0.0 UniRef50_Q0C1C2 DNA polymerase III, alpha subunit n=2 Tax=Alphap... 1197 0.0 UniRef50_C1XIK2 DNA polymerase III, alpha subunit n=2 Tax=Meioth... 1196 0.0 UniRef50_B1GZ26 DNA polymerase III subunit alpha n=2 Tax=cellula... 1195 0.0 UniRef50_C7N8B2 DNA-directed DNA polymerase III PolC n=2 Tax=Cor... 1193 0.0 UniRef50_B1ZMU7 DNA polymerase III, alpha subunit n=3 Tax=Opitut... 1191 0.0 UniRef50_C6VZ84 DNA polymerase III, alpha subunit n=3 Tax=Sphing... 1190 0.0 UniRef50_B9JDK3 DNA polymerase III alpha subunit protein n=54 Ta... 1190 0.0 UniRef50_D2LTB4 DNA polymerase III, alpha subunit n=1 Tax=Bacill... 1189 0.0 UniRef50_D1NST8 DNA polymerase III, alpha subunit n=1 Tax=Bifido... 1188 0.0 UniRef50_B0MXW1 Putative uncharacterized protein n=1 Tax=Alistip... 1185 0.0 UniRef50_C8WER6 DNA polymerase III, alpha subunit n=10 Tax=Alpha... 1180 0.0 UniRef50_Q9Z618 DNA polymerase III subunit alpha n=43 Tax=Actino... 1178 0.0 UniRef50_C4F7F9 Putative uncharacterized protein n=2 Tax=Collins... 1178 0.0 UniRef50_B1XVK6 DNA polymerase III, alpha subunit n=21 Tax=Burkh... 1177 0.0 UniRef50_P63978 DNA polymerase III subunit alpha n=117 Tax=root ... 1171 0.0 UniRef50_Q4FSI0 DNA polymerase III, alpha subunit n=6 Tax=Bacter... 1165 0.0 UniRef50_B0TZK7 DNA-directed DNA polymerase n=16 Tax=Francisella... 1163 0.0 UniRef50_B4S7C7 DNA polymerase III, alpha subunit n=11 Tax=Chlor... 1158 0.0 UniRef50_Q160T2 DNA polymerase III, alpha subunit n=39 Tax=Rhodo... 1153 0.0 UniRef50_C8W788 DNA polymerase III, alpha subunit n=1 Tax=Atopob... 1150 0.0 UniRef50_B5JFB3 DNA polymerase III, alpha subunit subfamily, put... 1148 0.0 UniRef50_B2RGQ8 DNA polymerase III alpha subunit n=2 Tax=Porphyr... 1148 0.0 UniRef50_B4CWT5 DNA polymerase III, alpha subunit n=1 Tax=Chthon... 1146 0.0 UniRef50_C8PHM9 DNA polymerase III, alpha subunit n=1 Tax=Campyl... 1146 0.0 UniRef50_A4IRQ9 DNA polymerase III alpha subunit n=5 Tax=Geobaci... 1145 0.0 UniRef50_Q9K838 DNA polymerase III subunit alpha n=1 Tax=Bacillu... 1143 0.0 UniRef50_C6XJW1 DNA polymerase III, alpha subunit n=1 Tax=Hirsch... 1143 0.0 UniRef50_A6LHM2 DNA polymerase III alpha subunit n=46 Tax=Bacter... 1143 0.0 UniRef50_A8VX11 DNA polymerase III, alpha subunit n=1 Tax=Bacill... 1141 0.0 UniRef50_Q2G7G3 DNA polymerase III, alpha subunit n=2 Tax=Alphap... 1137 0.0 UniRef50_Q83I40 DNA polymerase III alpha subunit n=2 Tax=Tropher... 1132 0.0 UniRef50_A5FKC9 DNA polymerase III, alpha subunit n=26 Tax=cellu... 1131 0.0 UniRef50_D1AIM1 DNA polymerase III, alpha subunit n=1 Tax=Sebald... 1131 0.0 UniRef50_Q6Q8S4 Predicted DNA polymerase III, alpha subunit n=1 ... 1130 0.0 UniRef50_Q9ZJF9 DNA polymerase III subunit alpha n=51 Tax=cellul... 1129 0.0 UniRef50_A4EAI0 Putative uncharacterized protein n=1 Tax=Collins... 1129 0.0 UniRef50_A8ZS53 DNA polymerase III, alpha subunit n=1 Tax=Desulf... 1128 0.0 UniRef50_A9B8D8 DNA polymerase III, alpha subunit n=6 Tax=Chloro... 1126 0.0 UniRef50_C0QYZ2 DNA polymerase III, alpha subunit n=2 Tax=Brachy... 1124 0.0 UniRef50_Q2GJ87 DNA polymerase III, alpha subunit n=8 Tax=Ricket... 1123 0.0 UniRef50_C2MCQ0 DNA polymerase III, alpha subunit family n=1 Tax... 1122 0.0 UniRef50_C3XGX7 DNA polymerase subunit III n=1 Tax=Helicobacter ... 1119 0.0 UniRef50_B7GGS6 DNA polymerase III, alpha subunit n=1 Tax=Anoxyb... 1118 0.0 UniRef50_C3JBN3 DNA polymerase III, alpha subunit family n=2 Tax... 1115 0.0 UniRef50_C0R3A1 DNA polymerase III, alpha subunit n=9 Tax=Ricket... 1110 0.0 UniRef50_Q03SB6 DNA polymerase III catalytic subunit, DnaE type ... 1109 0.0 UniRef50_A5TY39 DNA-directed DNA polymerase III alpha subunit n=... 1108 0.0 UniRef50_A6DMI0 DNA polymerase III, alpha subunit n=1 Tax=Lentis... 1106 0.0 UniRef50_Q9Z7N8 DNA polymerase III subunit alpha n=16 Tax=Chlamy... 1105 0.0 UniRef50_B9CKX0 DNA polymerase III subunit alpha n=1 Tax=Atopobi... 1103 0.0 UniRef50_UPI0001C42452 DNA polymerase III alpha subunit n=1 Tax=... 1098 0.0 UniRef50_B3WE63 DNA-directed DNA polymerase III, alpha subunit n... 1095 0.0 UniRef50_B9L5T8 DNA polymerase III alpha subunit n=1 Tax=Nautili... 1089 0.0 UniRef50_C3CTJ5 Putative uncharacterized protein n=1 Tax=Bacillu... 1089 0.0 UniRef50_Q38WU5 DNA-directed DNA polymerase III, alpha subunit n... 1089 0.0 UniRef50_D0RP61 DNA polymerase III subunit alpha n=1 Tax=alpha p... 1089 0.0 UniRef50_Q8CXA8 DNA polymerase III (Alpha subunit) n=1 Tax=Ocean... 1086 0.0 UniRef50_B3XXI1 Putative DNA polymerase III, alpha subunit n=1 T... 1086 0.0 UniRef50_C7NEL3 DNA polymerase III, alpha subunit n=3 Tax=Leptot... 1085 0.0 UniRef50_C7XU22 DNA polymerase III n=1 Tax=Lactobacillus coleoho... 1079 0.0 UniRef50_Q4FM70 DNA polymerase III alpha subunit n=8 Tax=Candida... 1072 0.0 UniRef50_D2EL28 DNA polymerase III subunit alpha n=1 Tax=Pedioco... 1072 0.0 UniRef50_Q1RKF9 DNA polymerase III subunit alpha n=21 Tax=Ricket... 1069 0.0 UniRef50_D0JAY7 DNA polymerase III subunit alpha n=2 Tax=Blattab... 1061 0.0 UniRef50_C9B7L3 DNA polymerase III alpha subunit n=18 Tax=Entero... 1057 0.0 UniRef50_C2D6U4 Possible DNA-directed DNA polymerase n=1 Tax=Ato... 1057 0.0 UniRef50_A8RC96 Putative uncharacterized protein n=2 Tax=Erysipe... 1045 0.0 UniRef50_Q2GEN2 DNA polymerase III, alpha subunit n=2 Tax=Neoric... 1044 0.0 UniRef50_Q1WTT4 DNA polymerase III alpha subunit n=2 Tax=Lactoba... 1035 0.0 UniRef50_D0BKV5 DNA polymerase III, alpha subunit n=1 Tax=Granul... 1033 0.0 UniRef50_C4YXX0 DNA polymerase III, alpha subunit family n=1 Tax... 1031 0.0 UniRef50_B1MYD7 DNA polymerase III, alpha subunit n=3 Tax=Leucon... 1018 0.0 UniRef50_C5RC77 DNA-directed DNA polymerase III, alpha chain n=1... 1015 0.0 UniRef50_B2GC21 DNA-directed DNA polymerase III alpha subunit n=... 1015 0.0 UniRef50_B9L411 Error-prone DNA polymerase n=1 Tax=Thermomicrobi... 1015 0.0 UniRef50_Q67N73 Error-prone DNA polymerase n=1 Tax=Symbiobacteri... 1012 0.0 UniRef50_Q03F73 DNA polymerase III catalytic subunit, DnaE type ... 1010 0.0 UniRef50_Q5Z1D1 Error-prone DNA polymerase n=42 Tax=Bacteria Rep... 1010 0.0 UniRef50_C4FWP2 Putative uncharacterized protein n=1 Tax=Catonel... 1009 0.0 UniRef50_C0GKP9 DNA polymerase III, alpha subunit n=1 Tax=Dethio... 1007 0.0 UniRef50_D1C6C8 DNA polymerase III, alpha subunit n=1 Tax=Sphaer... 1005 0.0 UniRef50_C0YII7 DNA-directed DNA polymerase n=1 Tax=Chryseobacte... 1005 0.0 UniRef50_A8YV21 DNA polymerase III alpha subunit n=5 Tax=Lactoba... 1002 0.0 UniRef50_B1HX19 DNA polymerase III subunit alpha n=2 Tax=Bacilla... 1000 0.0 UniRef50_Q5WEF1 DNA polymerase III alpha subunit DnaE n=1 Tax=Ba... 999 0.0 UniRef50_C8WVC5 DNA polymerase III, alpha subunit n=2 Tax=Alicyc... 997 0.0 UniRef50_C3RN28 DNA polymerase III dnaE (Fragment) n=3 Tax=Bacte... 995 0.0 UniRef50_Q1IJA3 DNA polymerase III, alpha subunit n=4 Tax=Bacter... 994 0.0 UniRef50_C8NF53 DNA polymerase III, alpha subunit n=1 Tax=Granul... 993 0.0 UniRef50_C1F6L4 DNA polymerase III, alpha subunit n=2 Tax=Acidob... 985 0.0 UniRef50_C2E9M6 DNA polymerase III alpha subunit n=1 Tax=Lactoba... 982 0.0 UniRef50_Q043V3 DNA polymerase III catalytic subunit, DnaE type ... 981 0.0 UniRef50_A4X9U2 DNA polymerase III, alpha subunit n=5 Tax=Actino... 980 0.0 UniRef50_C6X5Z0 DNA polymerase III alpha subunit n=1 Tax=Flavoba... 978 0.0 UniRef50_C5QT78 DNA polymerase III, alpha subunit n=5 Tax=Staphy... 978 0.0 UniRef50_B7CD33 Putative uncharacterized protein n=1 Tax=Eubacte... 977 0.0 UniRef50_Q47EP3 Error-prone DNA polymerase n=16 Tax=Bacteria Rep... 974 0.0 UniRef50_Q6G8M4 DNA polymerase III subunit alpha n=62 Tax=Staphy... 972 0.0 UniRef50_C5B539 DNA polymerase III, alpha subunit n=1 Tax=Methyl... 971 0.0 UniRef50_C6XNZ2 DNA polymerase III, alpha subunit n=10 Tax=Bacte... 971 0.0 UniRef50_C2E227 Possible DNA-directed DNA polymerase n=9 Tax=Lac... 970 0.0 UniRef50_D0LSK7 DNA polymerase III, alpha subunit n=2 Tax=Nannoc... 969 0.0 UniRef50_D1BHX7 DNA polymerase III, alpha subunit n=1 Tax=Sangui... 968 0.0 UniRef50_B1ZZZ1 DNA polymerase III, alpha subunit n=1 Tax=Opitut... 968 0.0 UniRef50_Q7UXK9 Error-prone DNA polymerase n=1 Tax=Rhodopirellul... 967 0.0 UniRef50_Q1YPP6 DNA polymerase III, alpha subunit, putative n=1 ... 963 0.0 UniRef50_C8WRV2 DNA polymerase III, alpha subunit n=2 Tax=Alicyc... 962 0.0 UniRef50_D2DXW4 DNA polymerase III alpha subunit (Fragment) n=1 ... 961 0.0 UniRef50_D2DXS3 DNA polymerase III alpha subunit n=2 Tax=Verruco... 957 0.0 UniRef50_Q6A780 Error-prone DNA polymerase n=9 Tax=Actinobacteri... 955 0.0 UniRef50_C1AAH7 Error-prone DNA polymerase n=1 Tax=Gemmatimonas ... 951 0.0 UniRef50_B1XYC3 DNA polymerase III, alpha subunit n=4 Tax=Burkho... 949 0.0 UniRef50_D1VJQ4 DNA polymerase III, alpha subunit n=1 Tax=Franki... 946 0.0 UniRef50_C7R3Y6 DNA polymerase III, alpha subunit n=1 Tax=Jonesi... 944 0.0 UniRef50_Q7WHW8 Error-prone DNA polymerase n=12 Tax=Proteobacter... 944 0.0 UniRef50_C5BNE0 Error-prone DNA polymerase n=4 Tax=Bacteria RepI... 938 0.0 UniRef50_A7BC77 Putative uncharacterized protein n=1 Tax=Actinom... 934 0.0 UniRef50_B9JWL2 Error-prone DNA polymerase n=34 Tax=Bacteria Rep... 934 0.0 UniRef50_Q28S37 DNA polymerase III alpha subunit n=10 Tax=Bacter... 933 0.0 UniRef50_B7ABG0 DNA polymerase III, alpha subunit n=2 Tax=cellul... 933 0.0 UniRef50_Q63XR8 Error-prone DNA polymerase n=34 Tax=Proteobacter... 932 0.0 UniRef50_A1BA11 DNA polymerase III, alpha subunit n=6 Tax=Alphap... 931 0.0 UniRef50_D0MJZ2 DNA polymerase III, alpha subunit n=1 Tax=Rhodot... 930 0.0 UniRef50_B5EJ94 DNA polymerase III, alpha subunit n=3 Tax=Acidit... 928 0.0 UniRef50_B5JLP8 DNA polymerase III, alpha subunit subfamily, put... 927 0.0 UniRef50_D0IVK9 DNA polymerase III, alpha subunit n=5 Tax=cellul... 926 0.0 UniRef50_C1CZH7 Putative DNA-directed DNA polymerase (DNA polyme... 923 0.0 UniRef50_D0WMM2 Putative DNA polymerase III dnae2 n=1 Tax=Actino... 921 0.0 UniRef50_C8NZJ2 DNA polymerase III subunit alpha n=1 Tax=Erysipe... 921 0.0 UniRef50_C3M9Z5 Error-prone DNA polymerase n=28 Tax=cellular org... 918 0.0 UniRef50_C0W389 DNA-directed DNA polymerase n=1 Tax=Actinomyces ... 918 0.0 UniRef50_B2UJ29 Error-prone DNA polymerase n=70 Tax=Betaproteoba... 916 0.0 UniRef50_Q9RX08 DNA polymerase III subunit alpha n=2 Tax=Deinoco... 916 0.0 UniRef50_Q1AUQ9 DNA polymerase III, alpha subunit n=1 Tax=Rubrob... 915 0.0 UniRef50_B0T091 DNA polymerase III, alpha subunit n=1 Tax=Caulob... 913 0.0 UniRef50_A9FIY0 DNA polymerase III, alpha subunit n=1 Tax=Sorang... 913 0.0 UniRef50_C5BVF1 DNA polymerase III, alpha subunit n=3 Tax=Actino... 912 0.0 UniRef50_A3QER8 DNA polymerase III, alpha subunit n=3 Tax=Gammap... 911 0.0 UniRef50_Q5LVN0 Error-prone DNA polymerase n=30 Tax=Proteobacter... 910 0.0 UniRef50_Q21LY9 Error-prone DNA polymerase n=12 Tax=Proteobacter... 909 0.0 UniRef50_B9E7A8 DNA polymerase III alpha chain n=1 Tax=Macrococc... 907 0.0 UniRef50_Q6M7C6 Error-prone DNA polymerase n=7 Tax=Bacteria RepI... 906 0.0 UniRef50_Q8KTR8 DNA polymerase alpha subunit n=1 Tax=Candidatus ... 900 0.0 UniRef50_Q2IU52 Error-prone DNA polymerase n=43 Tax=Proteobacter... 900 0.0 UniRef50_B4W721 DNA polymerase III, alpha subunit subfamily, put... 900 0.0 UniRef50_Q6MQS6 Error-prone DNA polymerase n=1 Tax=Bdellovibrio ... 897 0.0 UniRef50_P74750 Ssp dnaE intein (Fragments) n=29 Tax=Cyanobacter... 896 0.0 UniRef50_C5CQX7 DNA polymerase III, alpha subunit n=2 Tax=Comamo... 895 0.0 UniRef50_B8ELP6 DNA polymerase III, alpha subunit n=6 Tax=Alphap... 894 0.0 UniRef50_B2SI43 Error-prone DNA polymerase n=31 Tax=Gammaproteob... 892 0.0 Sequences not found previously or not previously below threshold: >UniRef50_Q8X8X5 DNA polymerase III subunit alpha n=288 Tax=cellular organisms RepID=DPO3A_ECO57 Length = 1160 Score = 1473 bits (3815), Expect = 0.0, Method: Composition-based stats. Identities = 1158/1160 (99%), Positives = 1159/1160 (99%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA Sbjct: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW Sbjct: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 180 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES Sbjct: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 180 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM Sbjct: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 Query: 241 RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKEGL 300 RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKEGL Sbjct: 241 RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKEGL 300 Query: 301 EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360 EERLAFLFPDEEER+KRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP Sbjct: 301 EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360 Query: 361 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD Sbjct: 361 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420 Query: 421 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQ 480 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQ Sbjct: 421 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQ 480 Query: 481 LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQ 540 LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQ Sbjct: 481 LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQ 540 Query: 541 FDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDML 600 FDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDML Sbjct: 541 FDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDML 600 Query: 601 QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE 660 QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE Sbjct: 601 QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE 660 Query: 661 ISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM 720 ISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM Sbjct: 661 ISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM 720 Query: 721 AKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA 780 AKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA Sbjct: 721 AKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA 780 Query: 781 EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG 840 EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG Sbjct: 781 EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG 840 Query: 841 VGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMN 900 VGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMN Sbjct: 841 VGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMN 900 Query: 901 SLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLY 960 SLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLY Sbjct: 901 SLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLY 960 Query: 961 LTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLD 1020 LTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLD Sbjct: 961 LTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLD 1020 Query: 1021 DRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKY 1080 DRSGRLEVMLFTDALDKYQ LLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKY Sbjct: 1021 DRSGRLEVMLFTDALDKYQHLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKY 1080 Query: 1081 ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSD 1140 ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSD Sbjct: 1081 ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSD 1140 Query: 1141 RLLNDLRGLIGSEQVELEFD 1160 RLLNDLRGLIGSEQVELEFD Sbjct: 1141 RLLNDLRGLIGSEQVELEFD 1160 >UniRef50_P52022 DNA polymerase III subunit alpha n=118 Tax=Gammaproteobacteria RepID=DPO3A_VIBCH Length = 1159 Score = 1424 bits (3686), Expect = 0.0, Method: Composition-based stats. Identities = 882/1160 (76%), Positives = 1014/1160 (87%), Gaps = 1/1160 (0%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS+P+F+HLR+HSD+SM+DGL+K PLVKK AA+GMPA+A+TDFTNLCGLVKFY H Sbjct: 1 MSDPKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNC 60 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 G+KPI+GADF +Q + GDELT LT+LA NN GY+NLTLLISKAY RG+ P+ID+ W Sbjct: 61 GVKPIIGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAW 120 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 180 L+E EGLI+LSGG+ G+VGR+LL+GN V+ C+ FY+ HF D ++LELIRTGR DEES Sbjct: 121 LVEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEES 180 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 YLH A+++AE LPVVATN+V FI F+AHEIRVAIHDG+TL+DP+RP+NYSP+QY+ Sbjct: 181 YLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYL 240 Query: 241 RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKEGL 300 RSE EMCELFADIPEALAN+VEIAKRCNVTVRLGEYFLP FPTG M+ ED+LV +++EGL Sbjct: 241 RSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTGGMAIEDFLVMKSREGL 300 Query: 301 EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360 EERL FLFPD E R KRRPEYDERL+ EL VINQMGFPGYFLIVMEFIQWSKDN +PVGP Sbjct: 301 EERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 360 Query: 361 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420 GRGSGAGSLVAYALKITDLDPLE+DLLFERFLNPERVSMPDFDVDFCM+KRDQVI+HVA+ Sbjct: 361 GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420 Query: 421 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQ 480 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHP+GFVDRISKL+PPDPGMTL KAF AEP Sbjct: 421 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFIAEPA 480 Query: 481 LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQ 540 L E+Y+ADEEVK LID R LEG TRNAGKHAGGVVI+PT ITDFAP+YCD EG PVTQ Sbjct: 481 LQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPVTQ 540 Query: 541 FDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDML 600 FDK+DVE AGLVKFDFLGLRTLTII+WAL ++N R K G+PP+ I AIPLDD +SF L Sbjct: 541 FDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFRNL 600 Query: 601 QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE 660 Q ++TTAVFQLESRGMK+LIKRLQPDCFED+IALVALFRPGPLQSGMVDNFIDRKHGRE Sbjct: 601 QDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREA 660 Query: 661 ISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM 720 ISYPD +WQHESLK +LEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM Sbjct: 661 ISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM 720 Query: 721 AKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA 780 AKQR+VF EGAEKNG++ ELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK HYPA Sbjct: 721 AKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPA 780 Query: 781 EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG 840 EFMAAVMTADMDNTEKVVGLVDEC MGL +LPPDINSGLY F+V+D+G IVYGIGAIKG Sbjct: 781 EFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDDNGAIVYGIGAIKG 840 Query: 841 VGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMN 900 VGEGPIEAI+EARNKGGYF++LFD CAR D KK+N+RV+EKLI++GA DRLGPHRAA+M Sbjct: 841 VGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLGPHRAAMMA 900 Query: 901 SLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLY 960 S+ DA++AA QH +AEA GQADMFGVL + PE++EQ Y WPE+V L+GERETLGLY Sbjct: 901 SVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLEGERETLGLY 960 Query: 961 LTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLD 1020 LTGHP+++YLKE+ +Y RL + PT R + +T AGLV+AARVM TKRG RIG+ TLD Sbjct: 961 LTGHPVDEYLKELTKYTSC-RLNEAAPTRRDQSLTVAGLVIAARVMTTKRGTRIGLMTLD 1019 Query: 1021 DRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKY 1080 DRSGR+EVML+++ALD+Y + LEKD+IL+VSGQVSFDDF+GGLKM+AREVMD+ AREK+ Sbjct: 1020 DRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGGLKMSAREVMDLGSAREKF 1079 Query: 1081 ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSD 1140 ARGL+IS+ QID Q R LEPHR+GT+PV++YYQR DARARL G WRV+PSD Sbjct: 1080 ARGLSISILQSQIDQQFFERFSHILEPHRAGTVPVNVYYQRPDARARLTLGTEWRVTPSD 1139 Query: 1141 RLLNDLRGLIGSEQVELEFD 1160 LL++L+ L+G +QVELEF+ Sbjct: 1140 TLLDELKQLLGHDQVELEFN 1159 >UniRef50_A1AQQ6 DNA polymerase III, alpha subunit n=12 Tax=Deltaproteobacteria RepID=A1AQQ6_PELPD Length = 1184 Score = 1369 bits (3544), Expect = 0.0, Method: Composition-based stats. Identities = 496/1188 (41%), Positives = 723/1188 (60%), Gaps = 45/1188 (3%) Query: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61 + FVHL VH+ YS++DG + L+ KA A MPALAITD N+ G V+FY AG Sbjct: 11 PQAPFVHLHVHTQYSLLDGAIRLEDLIAKAKAHNMPALAITDHGNMFGAVEFYLKCKKAG 70 Query: 62 IKPIVGADFNVQCDLLGDE---------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAA 112 IKP++G + + D HL +L N GY+NL+ L S Y+ G+ Sbjct: 71 IKPLIGCEVYIAPDSRFSRESTRGISEAAYHLILLCENMQGYRNLSYLTSAGYKEGF-YY 129 Query: 113 GPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172 P IDR+ L E +EGLI LS G+V R E +Y + FPDRY++EL Sbjct: 130 RPRIDRELLQEHSEGLIALSACLKGEVAMQCFRDRMDDALETARWYSQLFPDRYYIELQE 189 Query: 173 TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 P+++ +E+A LP+VATND +++ D AHE+ + I G T+ DP + Sbjct: 190 NTLPEQDVVNKRLMEVAATLQLPLVATNDCHYLNREDARAHEVLLCIQTGKTMSDPSHMK 249 Query: 233 NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLG--EYFLPQFPTGDM-STE 289 + + Y++S EEM F PEA++NT++IA RC++ + L EY P F + + Sbjct: 250 FSAEEFYVKSPEEMVAAFGYAPEAVSNTLKIADRCDLKLPLDTGEYHFPHFDPPAGKNHD 309 Query: 290 DYLVKRAKEGLEERLAFLFPDEEE-RLKRRPEYDERLETELQVINQMGFPGYFLIVMEFI 348 D L + A +GL+ER+ + + L+RR Y ERL+ EL+ I +M FP YFLIV +FI Sbjct: 310 DMLEELAVQGLKERMVTILAKYPDMSLERRQAYFERLQIELKCIREMQFPAYFLIVSDFI 369 Query: 349 QWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCM 408 W+K+ G+PVGPGRGS AGSLVAYA++ITDLDPL ++LLFERFLNPER++MPD DVDFC Sbjct: 370 TWAKNKGIPVGPGRGSAAGSLVAYAIRITDLDPLPYNLLFERFLNPERITMPDIDVDFCQ 429 Query: 409 EKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG 468 ++R++VI++V + YGR+ V QIITFGTM AKAV+RDVGR L YG VDRI+KLIP D Sbjct: 430 DRREEVIQYVIEKYGRERVCQIITFGTMKAKAVVRDVGRALNMTYGDVDRIAKLIPDDLK 489 Query: 469 MTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPL 528 MTLAKA + EPQL E+ E D +V+ L+D A LEG+TR+A HA GVV+AP ++ +F P+ Sbjct: 490 MTLAKALKQEPQLNEMAERDPQVRDLLDTALCLEGLTRHASTHAAGVVVAPRQLEEFLPV 549 Query: 529 YCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAA 588 Y D++ TQ+ VE GLVKFDFLGL+ LT+I A+ ++ + +P DI Sbjct: 550 YKDQKTGSINTQYSMKYVEMVGLVKFDFLGLKNLTVIENAVHLVRAGK----DPDFDITR 605 Query: 589 IPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMV 648 + DD +S+D++ TT +FQLES GMK+++ +L+P CFED+IA AL+RPGPL GMV Sbjct: 606 LRDDDSESYDLISSGNTTGIFQLESSGMKEMLVKLKPSCFEDVIAACALYRPGPLGCGMV 665 Query: 649 DNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADML 708 D FI+RKHGR+++ Y L+P+L+ TYG+I+YQEQVMQI++ L+GY+LG AD+L Sbjct: 666 DEFIERKHGRQKVVYDL-----PQLEPILKDTYGVIVYQEQVMQISRTLAGYSLGRADLL 720 Query: 709 RRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVS 768 RRAMGKK P MAK++ F EGA+ GI+ + A IFD + KFA YGFNKSHSAAYAL++ Sbjct: 721 RRAMGKKDPAVMAKEKEPFLEGAKAQGIDPKKAEAIFDQMAKFAEYGFNKSHSAAYALIA 780 Query: 769 YQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDD 828 YQT WLK+HYP EF+AA++T DMD+T+KV+ +++C G+++LPPD+N F V + Sbjct: 781 YQTAWLKSHYPVEFLAALLTCDMDSTDKVIKNINDCREQGIEVLPPDVNKSGLTFTVVGN 840 Query: 829 GEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAF 888 + +G+GA+KGVG G +EAI+EAR G F++++D C R D ++ N++VLE LI GAF Sbjct: 841 -SMRFGLGAVKGVGTGAVEAILEARQ-DGPFKDVYDFCERVDMRRSNKKVLEALIKCGAF 898 Query: 889 DRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLA-EEPEQIEQSYASCQPWPEQ 947 D RAA+M L A+ + + A Q +FG W ++ Sbjct: 899 DSTNAPRAAMMEGLETAMNFGQRIQQERASAQVSLFGDDEVARSGGNGHRLPDVPEWHDK 958 Query: 948 VVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMV 1007 L E+E LG +TGHP+++Y+ +I+R + V + + G I G+V + + + Sbjct: 959 EKLALEKEALGFLITGHPLDRYVDDIKR-LNCVEISRLTEQADGGEIRVCGIVSSLKEIT 1017 Query: 1008 TKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMT- 1066 TK+G+R+G T++D +G +EV +F+D LL+ D L++ G++ + + + Sbjct: 1018 TKKGDRMGFVTIEDLTGSVEVTVFSDIYTSAVSLLKGDDPLLIDGKLERGEKGAKILVRG 1077 Query: 1067 ---------------AREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSG 1111 A ++ + + R + + + +L + + L L+ +E H+ G Sbjct: 1078 QSEGASEWQLKQRGPAGDIRHLLDVRAQSTKRVVFTLLTDETPPEHLEVLKGIIERHQ-G 1136 Query: 1112 TIPVHLYYQRADA-RARLRFGATWRVSPSDRLLNDLRGLIGSEQVELE 1158 ++P + + R+ L + V+ SD L ++ L G E Sbjct: 1137 SVPTEIQFLIPQRSRSTLALPESMNVAASDDLRLEVERLFGYNAASFE 1184 >UniRef50_A4J6X6 DNA polymerase III catalytic subunit, DnaE type n=28 Tax=Bacteria RepID=A4J6X6_DESRM Length = 1225 Score = 1364 bits (3531), Expect = 0.0, Method: Composition-based stats. Identities = 478/1185 (40%), Positives = 703/1185 (59%), Gaps = 65/1185 (5%) Query: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61 E +FVHL VH++YS++DG ++ + K+A GM +LAITD + G+V FY H G Sbjct: 8 PENQFVHLHVHTEYSLLDGASRINQMAKQAKESGMNSLAITDHGCMFGVVDFYKVCHKEG 67 Query: 62 IKPIVGADFNVQCDLLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGP 114 +KPI+G + V D HL +LA N GY+NL L+S Y G+ P Sbjct: 68 VKPILGCEVYVAPRRRIDRTPKLDDQPNHLVLLAENQEGYKNLLKLVSLGYTEGF-YYKP 126 Query: 115 IIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRT 173 +D++ L ++GLI LS G+V +L + Y + F D +FLEL Sbjct: 127 RVDKELLQRYHKGLIALSACLAGEVADKILGSQPEKARQAAREYVDIFGKDNFFLELQDH 186 Query: 174 GRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRN 233 G ++ + +++A+ +P+VATNDV ++ + ++ + I G +++ P R + Sbjct: 187 GYQEQRTVNRELLKIAKELQIPLVATNDVHYLKREHAEIQDVLLCIQTGKSINTPGRMKF 246 Query: 234 YSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMST-EDYL 292 S + Y++S EM LFA+IP+AL+NT+ IA+RC V + G+Y LP F + S+ YL Sbjct: 247 ESQEMYLKSPHEMNLLFAEIPDALSNTLRIAERCQVDLEFGKYHLPYFTVPEESSPAQYL 306 Query: 293 VKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSK 352 ++ EG +R ERLE EL VI +MG+ YFLIV +FI +++ Sbjct: 307 REKCLEGAIKRYGHC----------SGPVQERLEYELNVIGKMGYDEYFLIVWDFIHYAR 356 Query: 353 DNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRD 412 G+ VGPGRGS AGS+V+YAL IT++DPL++ LLFERFLNPER+SMPD D+DF E+R Sbjct: 357 QKGIAVGPGRGSAAGSIVSYALGITNIDPLKYGLLFERFLNPERISMPDIDIDFDYERRG 416 Query: 413 QVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA 472 +VIE++ YG D V+QIITFGTMAA+A IRDVGR L PYG VDR++KL+P + +T+A Sbjct: 417 EVIEYIVQKYGTDRVAQIITFGTMAARAAIRDVGRALDMPYGDVDRVAKLVPTELNITIA 476 Query: 473 KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDE 532 KA + P L Y+ D EVK L+D A LEG+ R+A HA GVVI+ + ++ PL Sbjct: 477 KALTSSPDLKAAYDQDPEVKRLVDTAAALEGMPRHASTHAAGVVISREPLVEYLPLSKTS 536 Query: 533 EGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLD 592 +G TQF + VE GL+K D LGLR LT+I+ + +I + + E LDI IPLD Sbjct: 537 DG-LVTTQFPMTTVEELGLLKMDLLGLRNLTVISETVNLIEQIK----ETKLDINTIPLD 591 Query: 593 DKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFI 652 D+ +FDML R E VFQLES GM+++++ L+P+ FED++ALVAL+RPGPL SGMV++FI Sbjct: 592 DQATFDMLTRGEGVGVFQLESSGMRNILRELKPNAFEDIVALVALYRPGPLGSGMVEDFI 651 Query: 653 DRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAM 712 RKHG+ ++ Y H L+P+L+ TYG+ILYQEQVM IA++++GY+LG AD LR+AM Sbjct: 652 QRKHGQNKVDY-----FHPDLEPILKETYGVILYQEQVMMIARIMAGYSLGQADALRKAM 706 Query: 713 GKKKPEEMAKQRSVFAE----------------GAEKNGINAELAMKIFDLVEKFAGYGF 756 GKK + M R F GA G + +LA K+FDL+E FAGYGF Sbjct: 707 GKKIAKIMGMHRDWFINGSTLDDKGKPLKNPIPGAVARGYSRQLAEKMFDLMEYFAGYGF 766 Query: 757 NKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDI 816 NKSHSAAYALVSYQT +LKA+YP E+MAA++T+ DNT+KVV +DEC RMG+++LPPDI Sbjct: 767 NKSHSAAYALVSYQTAYLKANYPVEYMAALLTSVRDNTDKVVLYIDECRRMGIQVLPPDI 826 Query: 817 NSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNR 876 N +F +G I +G+ A+K VG G ++ II+ R K G F +DLC R DT+ NR Sbjct: 827 NLSRENFTAA-NGAIRFGMAAVKNVGWGAVQEIIQIREKKGPFTGFYDLCGRLDTRIANR 885 Query: 877 RVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQI-E 935 RVLE LI +GA D G R+ L+ L L+ A + + GQ +F +++E P Q+ E Sbjct: 886 RVLESLIKAGALDAFGY-RSQLLAGLDTGLEHAARSQRDREQGQVSLFDLMSESPAQVME 944 Query: 936 QSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVIT 995 + L+ E+E LGLY++GHP++++ + + R+ + G + Sbjct: 945 LKLPHVPRLTSRQQLEMEKEALGLYISGHPLSEF-GWLLDQLEVQRVVHLAELPDGNNLL 1003 Query: 996 AAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVS 1055 AG++ + + +++G+ + TL+D +G EV++F ++ LL+ L++ G++ Sbjct: 1004 VAGIISTIKRITSRKGDPMAFLTLEDLTGSCEVVVFPQVYRRHFSLLDLKVPLLLKGKL- 1062 Query: 1056 FDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPV 1115 ++ K+ A E+ ++ + L + L++ I +L RL G+ PV Sbjct: 1063 -NNNGEETKILAEEIQPLENVTCE----LWLRLSENVISKELEERLIS-----HPGSSPV 1112 Query: 1116 HLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSEQVELEFD 1160 L+Y + +L VS S L L L+G + + L F+ Sbjct: 1113 FLFYPEDRHKVQLEKE----VSLSLNLKRSLTSLLGEDNILLRFN 1153 >UniRef50_Q9HXZ1 DNA polymerase III subunit alpha n=46 Tax=Gammaproteobacteria RepID=DPO3A_PSEAE Length = 1173 Score = 1363 bits (3527), Expect = 0.0, Method: Composition-based stats. Identities = 684/1172 (58%), Positives = 862/1172 (73%), Gaps = 22/1172 (1%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHLR+H+++S++DGL + PL K A LGMPA+A+TD +N+C LVKFY GAGIKPI Sbjct: 5 FVHLRLHTEFSLVDGLVRVKPLAKAVAGLGMPAVAVTDQSNMCSLVKFYKTAMGAGIKPI 64 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 GAD + L+ L++LA N GY+NLT LIS+ + G II+RDW+ E Sbjct: 65 CGADIWLASREEDGPLSRLSLLAMNAKGYRNLTELISRGWSEGQRNGEIIIERDWVKEAA 124 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 185 EGLI LS + G++G +LL G A + + + E FP+R+++E+ RT R ++E +LHAA Sbjct: 125 EGLIALSAAKEGEIGHALLDGEEAKAEALLREWMEVFPERFYVEVQRTSRVNDEEHLHAA 184 Query: 186 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 245 V LA P+VATNDVRFI DF+AHE RV I +G TLDDP+RPR YS QQY++S E Sbjct: 185 VALASRCNAPLVATNDVRFIKQEDFEAHETRVCIGEGRTLDDPRRPRTYSDQQYLKSPAE 244 Query: 246 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMS-TEDYLVKRAKEGLEERL 304 M ELF+D+PEAL NTVEIAKRCN+ V+LG+YFLP FPT + +DYL + EGLEERL Sbjct: 245 MAELFSDLPEALENTVEIAKRCNIEVQLGKYFLPDFPTPNGMGIDDYLRHASFEGLEERL 304 Query: 305 AFLFP-DEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRG 363 L P D + +R Y +RL EL +I QMGFPGYFLIVM+FI+W+K+NGVPVGPGRG Sbjct: 305 EVLLPKDTPDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIKWAKNNGVPVGPGRG 364 Query: 364 SGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYG 423 SGAGSLVAY LKITDLDPL +DLLFERFLNPER+SMPDFDVDFCME RD+VI++VAD YG Sbjct: 365 SGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFCMEGRDRVIDYVADAYG 424 Query: 424 RDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPE 483 R+AVSQIITFGTMAAKAV+RDV RV G YG DR+SK+IP + GMTL KA+E E L + Sbjct: 425 RNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLDKAYEQEEMLRD 484 Query: 484 IYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDK 543 ++DEE + +MA KLEG+TR GKHAGGVVIAPTK+TDF+P+ CDEEG VTQFDK Sbjct: 485 FLKSDEEAAEIWEMALKLEGITRGTGKHAGGVVIAPTKLTDFSPIACDEEGGGLVTQFDK 544 Query: 544 SDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRS 603 DVE AGLVKFDFLGLRTLTII WA+E+IN+ +AK G P++I IPLDDK ++ +LQ++ Sbjct: 545 DDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKGLEPVNIDFIPLDDKPTYSLLQKA 604 Query: 604 ETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISY 663 ETTAVFQLESRGMK+LIK+L+PDC ED+IALVALFRPGPLQSGMVD+FI+RKHGR E+SY Sbjct: 605 ETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGRAELSY 664 Query: 664 PDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQ 723 P +Q+ L+PVL+PTYGIILYQEQVMQIAQV++GYTLGGADMLRRAMGKKKPEEMAKQ Sbjct: 665 PHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPEEMAKQ 724 Query: 724 RSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFM 783 R F EG + NGI+A+LA IFDLVEKFAGYGFNKSHSAAY LVSYQT WLK H+PA FM Sbjct: 725 RGGFIEGCKNNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHFPAPFM 784 Query: 784 AAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGE 843 AAV+TADM NT+KVV L++EC M L+I+ PD+N+ + F V+DDG IVYG+GAIKGVGE Sbjct: 785 AAVLTADMQNTDKVVTLIEECRHMKLRIVAPDVNNSEFRFTVDDDGRIVYGLGAIKGVGE 844 Query: 844 GPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPH--------- 894 GP+EAI E R +GG F LFD C R D K++N+R LE LI +GA DRLGPH Sbjct: 845 GPVEAITECRAEGGPFNTLFDFCDRVDLKRINKRTLEALIRAGALDRLGPHYHDELKAYQ 904 Query: 895 ------RAALMNSLGDALKAADQHAKAEAIGQADMF-GVLAEEPEQIEQSYASCQPWPEQ 947 RA L+ ++ +A++AA+Q A++ G D+F GV AE + ++ + + Sbjct: 905 ATVDLNRAVLLAAMEEAIQAAEQTARSHDSGHMDLFGGVFAEPEADVYANHRKVKELTLK 964 Query: 948 VVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMV 1007 L GE++TLGLYLTGHPI++Y E+ R+ R+ ++ P + + AGL+V RVM Sbjct: 965 ERLKGEKDTLGLYLTGHPIDEYEGEVRRFAR-QRIVELKPARDTQTV--AGLIVNLRVMK 1021 Query: 1008 TKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTA 1067 K+G+++G TLDDRSGR+E LF++A Q LL+ D +++V G+VS DDFSGGL++ A Sbjct: 1022 NKKGDKMGFVTLDDRSGRIEASLFSEAFAAAQSLLQTDALVVVEGEVSQDDFSGGLRLRA 1081 Query: 1068 REVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARAR 1127 + VM ++EAR A L + L + L L + HR G+ P+ L Y ADA+A Sbjct: 1082 KRVMSLEEARTGLAESLRMKLHADLLKGDRLRWLGELFNRHR-GSCPITLDYTSADAKAL 1140 Query: 1128 LRFGATWRVSPSDRLLNDLRGLIGSEQVELEF 1159 L+FG +WRV P+D L+ LR G + V L + Sbjct: 1141 LQFGESWRVDPADDLIQALRDQFGRDNVFLNY 1172 >UniRef50_B5E8T0 DNA polymerase III, alpha subunit n=6 Tax=Deltaproteobacteria RepID=B5E8T0_GEOBB Length = 1156 Score = 1358 bits (3515), Expect = 0.0, Method: Composition-based stats. Identities = 489/1172 (41%), Positives = 721/1172 (61%), Gaps = 30/1172 (2%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M FVHL +HS YS++DG + L+KK MPA+A+TD N+ G ++FY Sbjct: 1 MDSTNFVHLHLHSQYSLLDGAIRIGDLLKKVKECHMPAVAMTDHGNMFGTLEFYLKCKDK 60 Query: 61 GIKPIVGADFNVQCDLLGDEL----------THLTVLAANNTGYQNLTLLISKAYQRGYG 110 G+KPI+G++ + + HL +L N TG++NL+ L+S Y+ G+ Sbjct: 61 GVKPILGSEVYIAPQDRFLKQAPSSPGQASSYHLILLCENMTGFKNLSYLVSAGYKEGF- 119 Query: 111 AAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170 P ID++ L++ EGLI+LS G+V R ++Y E+FP Y++EL Sbjct: 120 YRRPRIDKELLLKHKEGLIVLSACLQGEVAYLAGRNKMDEARAAASWYAENFPGSYYIEL 179 Query: 171 IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230 P+++ +E+A LP+VATND +++ D AHEI + I G T+ DP Sbjct: 180 QENKLPEQDIANRRLMEIAREMDLPLVATNDCHYLNREDARAHEILLCIQTGKTMSDPTH 239 Query: 231 PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMST-E 289 + Y+++ +EM + F PEA+ NTV+IA+RCN+ Y+ P + + T + Sbjct: 240 MAFSVDEFYVKTPQEMAQAFHYAPEAIENTVKIAERCNLEFDFKTYYFPAYEAPEGETLD 299 Query: 290 DYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQ 349 L + A GL ERL + ++ Y RL EL I QMGFPGYFLIV +FI Sbjct: 300 QQLEREATVGLVERLKKIRIKYNLTEEQEQAYHARLRIELDCIKQMGFPGYFLIVADFIN 359 Query: 350 WSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCME 409 W+KD+G+PVGPGRGS AGSLVA+ ++ITD+DP+ ++LLFERFLNPER+SMPD DVDFC + Sbjct: 360 WAKDHGIPVGPGRGSAAGSLVAFCIRITDIDPMPYNLLFERFLNPERISMPDIDVDFCQD 419 Query: 410 KRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGM 469 +R++VI+++ + YGR+ V QIITFGTMAA+ VIRDVGR L +G VDRI+KL+P G+ Sbjct: 420 RREEVIQYMVEKYGREKVCQIITFGTMAARGVIRDVGRALDLTFGEVDRIAKLVPEVLGI 479 Query: 470 TLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLY 529 TL KA E EP+L E+ AD +VK ++ +A +LEG+ R+A HA G+V+AP ++ +F P+Y Sbjct: 480 TLDKALEQEPKLKELMAADPKVKEVMTVALRLEGLARHASTHAAGLVVAPRQMEEFCPVY 539 Query: 530 CDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAI 589 D++ TQ+ VE GLVKFDFLGL+ LT+I+ A + I + +P DI + Sbjct: 540 KDQKTGSLTTQYSMKYVEKIGLVKFDFLGLKNLTVIDNACKHIRNGK----DPNFDITLL 595 Query: 590 PLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVD 649 DD++S+ +LQ TT VFQLES GMK+L+ +L+P CFED+IA+ AL+RPGPL SGMVD Sbjct: 596 RDDDEESYKLLQAGNTTGVFQLESSGMKELLVKLKPSCFEDIIAVCALYRPGPLGSGMVD 655 Query: 650 NFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLR 709 +FI+RKHGR++ Y L+PVL+ TYG+I+YQEQVMQI++ L+GY+LGGAD+LR Sbjct: 656 DFIERKHGRKQTVYDL-----PQLEPVLKDTYGVIVYQEQVMQISRSLAGYSLGGADLLR 710 Query: 710 RAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSY 769 RAMGKK E+MAK+R F EG+EK G++ + IFDL+ KFA YGFNKSHSAAYALV+Y Sbjct: 711 RAMGKKDAEQMAKERDKFLEGSEKLGLDGKKCAAIFDLMAKFAEYGFNKSHSAAYALVAY 770 Query: 770 QTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDG 829 QT +LKAHYP EFMAA++T DM NT+KV+ + +C MG+++LPPDIN F V D Sbjct: 771 QTAFLKAHYPVEFMAALLTEDMGNTDKVIKSIGDCREMGIEVLPPDINESDRSFRVL-DK 829 Query: 830 EIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFD 889 + +G+GA+K VGEG IEAIIEAR F++LFD C R D +++N+RV+E LI GAFD Sbjct: 830 AMRFGLGAVKNVGEGAIEAIIEARGDE-PFKDLFDFCERVDLRRVNKRVIEALIKCGAFD 888 Query: 890 RLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLA--EEPEQIEQSYASCQPWPEQ 947 G R+ LM L DA A + + QA +FG W E+ Sbjct: 889 CTGAKRSQLMAGLEDAASAGQRVQQERESAQASLFGAAEIVRGANGGGNRLPEIPEWDEK 948 Query: 948 VVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMV 1007 L E+E +G ++TGHP+++Y+ ++ R+ V + + + G+ + + ++ Sbjct: 949 YRLGCEKEAIGFFITGHPLDRYVADMRRF-SSVDCSTILDAKEKSEVRICGVPASVKELI 1007 Query: 1008 TKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTA 1067 TK+G+R+ L+D G +EV++F + K ++L D + V+G V + G K+ A Sbjct: 1008 TKKGDRMAFLALEDLVGSVEVVVFPETYAKCSEVLRGDDPIHVTGTVELSEK--GAKVMA 1065 Query: 1068 REVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRAD-ARA 1126 +++ + + E+ R + ++ +++D+ L L+ + ++ G L+ + +R Sbjct: 1066 SDIVLLRDLVERETRKVNFTIDAKEVDEGKLKTLKDIISRYQ-GICRSFLHLDIENSSRV 1124 Query: 1127 RLRFGATWRVSPSDRLLNDLRGLIGSEQVELE 1158 ++ ++VS S+ L ++ L G V E Sbjct: 1125 TIKLPDVYKVSASEELTVEVSNLFGYNAVSFE 1156 >UniRef50_C9KIR5 DNA polymerase III, alpha subunit n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KIR5_9FIRM Length = 1128 Score = 1335 bits (3456), Expect = 0.0, Method: Composition-based stats. Identities = 478/1162 (41%), Positives = 675/1162 (58%), Gaps = 47/1162 (4%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 F HL VH+++S++DG ++ L++ ALGM ++AITD + G++ FY G+KP Sbjct: 2 PFTHLHVHTEFSLLDGASRIKELIETTKALGMDSIAITDHGAMYGVIDFYKEAKKQGVKP 61 Query: 65 IVGADFNVQCDLLGD-------ELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIID 117 I+G + V + HL +LA N TGY+NL L+S A G P +D Sbjct: 62 IIGCEVYVAPGARQEHREVNGVRYYHLILLAENQTGYRNLVKLVSLANVEGM-YYKPRVD 120 Query: 118 RDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRTGRP 176 +D L + +EG+I LS G++ R++L+ N D V Y E F + +FLE+ G P Sbjct: 121 KDLLRQYHEGIICLSACIAGEIPRAILQDNMERADALVREYLEIFGRENFFLEIQNHGLP 180 Query: 177 DEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSP 236 +E VELA+ + +VATND+ ++ D + H+I + I T DDP R R S Sbjct: 181 EERKANAGLVELAKKYDVGLVATNDLHYVHREDSEFHDILLCIQMNKTFDDPDRMRFASD 240 Query: 237 QQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTED--YLVK 294 Y++S EEM LF D+PEA+ANT +IA RC V G LP +P +D YL Sbjct: 241 DYYLKSPEEMAALFPDLPEAIANTEKIAARCKVDFEFGHLQLPYYPIPAPYADDEAYLRH 300 Query: 295 RAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDN 354 +E L R A + + ERLE EL +I++MG+ YFLIV +FI +S+++ Sbjct: 301 LCEENLPRRYATV----------TEKIRERLEYELGIIHRMGYDSYFLIVWDFINYSREH 350 Query: 355 GVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQV 414 G+ VGPGRGS AGS+VAY L IT+LDPL++DLLFERFLNPERV+MPD DVDF +R +V Sbjct: 351 GIGVGPGRGSAAGSIVAYLLGITNLDPLKYDLLFERFLNPERVTMPDIDVDFDYIQRGKV 410 Query: 415 IEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKA 474 I++V + YG D V+QI+TFGTMAAK IRDVGRVL PY V I+KL+P + +TL KA Sbjct: 411 IDYVKERYGYDHVAQIVTFGTMAAKGAIRDVGRVLNLPYAEVAEIAKLVPNELKITLDKA 470 Query: 475 FEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEG 534 + + YE+ E+V LID+ARK+EG+ R++ HA GVVIA +TD+ P+ Sbjct: 471 MQESADFRKAYESSEDVHRLIDLARKIEGLPRHSSTHAAGVVIARHPLTDYVPV--SISE 528 Query: 535 KHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDK 594 VT++DK VE GL+K DFLGLRTLT+I+ + I K R +DI IPL D Sbjct: 529 GTLVTEYDKDHVEELGLLKMDFLGLRTLTVISDTIANIEKSRH----EKVDIDKIPLTDG 584 Query: 595 KSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDR 654 + ML +T AVFQ+ES GM L++ L P+ F D+I LVAL+RPGPL SGMV++FI Sbjct: 585 LTSKMLCEGKTGAVFQMESAGMTQLVRDLAPENFADLIPLVALYRPGPLGSGMVEDFIKG 644 Query: 655 KHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK 714 +HG +E++Y H L+P+L+ T+G++LYQEQVMQI QVL+G+TLG AD+LRRAMGK Sbjct: 645 RHGEKEVTY-----MHPLLEPILKETFGVVLYQEQVMQIVQVLAGFTLGQADLLRRAMGK 699 Query: 715 KKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWL 774 KK E + Q+ F +G EKN I+A LA IFDL+ FA YGFNKSHSAAYALV++QT +L Sbjct: 700 KKHEILMAQKENFLDGCEKNHIDAGLANTIFDLLTHFADYGFNKSHSAAYALVAWQTAYL 759 Query: 775 KAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYG 834 KAHYPAEFMAA++T+ + +T KV ++ C RMG+KILPPDIN+ +F V+ D I +G Sbjct: 760 KAHYPAEFMAAMLTS-IMDTPKVSTYIELCRRMGIKILPPDINASSAYFSVDGD-AIRFG 817 Query: 835 IGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPH 894 + A++ VGE IE + R GG F L D C R D + +NRRV+E LI GAFD G Sbjct: 818 LAAVRNVGETAIENVARIRETGGPFSSLSDFCRRVDMRVVNRRVIESLIKCGAFDSFGAK 877 Query: 895 RAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGER 954 R+ L+ L + A Q K GQ +F E P+ L E+ Sbjct: 878 RSQLLAVLPQTVMEAAQQQKDAVSGQMGLFSD-ETIEETGMLQLPDIDEVPKAERLRWEK 936 Query: 955 ETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRI 1014 E G Y+TGHP++QY ++E L+ +V+ G++ A+ + TK+G+ + Sbjct: 937 EATGFYITGHPLDQYAAKLENLPRIGSLQP-DTVRDKQVVRIGGMLTEAKRITTKKGDTM 995 Query: 1015 GICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDID 1074 T++D + +EV +F + LL D ++V G + D +K+ A V + Sbjct: 996 CFATVEDFTDSIEVTVFPRTFYQNMNLLVPDTPVVVQGHIDMTD--ETVKLIADSVWALK 1053 Query: 1075 EAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATW 1134 + R Y I L + + ++Q + H G + +AR + Sbjct: 1054 DYRFAY----YIELPAGGLPEAKRTEMKQLIAAHH-GDYATFFHSGGHWQKAR----ENF 1104 Query: 1135 RVSPSDRLLNDLRGLIGSEQVE 1156 + + L ++G+ +V Sbjct: 1105 WLDDAAETFEQLTAIVGAGKVR 1126 >UniRef50_D0LJI6 DNA polymerase III, alpha subunit n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LJI6_HALO1 Length = 1174 Score = 1332 bits (3449), Expect = 0.0, Method: Composition-based stats. Identities = 487/1187 (41%), Positives = 710/1187 (59%), Gaps = 42/1187 (3%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS F HL +H+ YS++DG + L K LGM ++A+TD N+ G V Y A Sbjct: 1 MSA--FTHLHLHTQYSLLDGAIRVKDLFPKVLELGMDSVAVTDHGNMFGAVDLYTAAREH 58 Query: 61 GIKPIVGADFNVQCDLLGDEL----THLTVLAANNTGYQNLTLLISKAYQRGYGAAGPII 116 G+K I G + + D H+ +LA + GY+NL+ L S Y G+ P I Sbjct: 59 GVKMIFGCETYIAASDRFDRTNRRSYHMVLLAKDQVGYKNLSFLNSMGYLEGF-YYNPRI 117 Query: 117 DRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRTGR 175 D+ L E +EGLI +S G+V ++LL+ +A + Y++ F ++LE++ Sbjct: 118 DKKILREHSEGLIGMSACLGGEVAQTLLKQGTAEAEAVALEYQDIFGKGNFYLEMMGNQL 177 Query: 176 PDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYS 235 +++ ++ G+P+VATND ++ D AHEI ++I G T D KR R+ Sbjct: 178 EEQQQLNADLKRMSRKLGIPLVATNDCHYVSQQDAHAHEILLSIQTGKTTSDDKRLRHTV 237 Query: 236 PQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMST-EDYLVK 294 ++++ EM F+D+PEA+ NTV+IA+RCNV + LG FLP + + + E YL K Sbjct: 238 DSYFLKNAAEMEVDFSDVPEAMENTVDIARRCNVELDLGNTFLPNYKVPEGMSVESYLEK 297 Query: 295 RAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDN 354 +GLE R L E R +Y ERL EL VIN+MGFPGYFLIV +FI W+K++ Sbjct: 298 VVFDGLERRFREL--SEIGRSFDPDQYRERLRHELGVINKMGFPGYFLIVWDFINWAKEH 355 Query: 355 GVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQV 414 +PVGPGRGSGAGS VA+A++ITD+DPLEF LLFERFLNPERVSMPDFDVDFCM +RD+V Sbjct: 356 NIPVGPGRGSGAGSCVAWAMRITDIDPLEFKLLFERFLNPERVSMPDFDVDFCMNRRDEV 415 Query: 415 IEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGM---TL 471 I++V YG V QI TF + A+ VIRD+ RV+ PY D+++KL+P G + Sbjct: 416 IDYVKRKYGEKNVGQIATFHQLKARGVIRDIARVMELPYAEADKLAKLVPDPVGGKSPPV 475 Query: 472 AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCD 531 A E EP+L +Y D +++ L+D+A LEG+ R+ G HA GVVIA + ++ P + Sbjct: 476 RDAIEQEPELKRLYNEDPKMRDLLDVAASLEGLNRHVGMHAAGVVIAEDPLWEYVPCFRG 535 Query: 532 EEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPL 591 + G+ VTQF + E AGLVKFDFLGL+TLT+I+ A+ +IN++R GEP DI I Sbjct: 536 QNGE-IVTQFAMKEAEKAGLVKFDFLGLKTLTVIHTAVRLINEQREAAGEPLFDIDKIDK 594 Query: 592 DDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNF 651 D + M+ R +TT VFQLES G ++++ +L+PD ED++A VAL+RPGPL+ GMVD+F Sbjct: 595 GDPAVYKMISRGDTTGVFQLESSGFREILTKLKPDQLEDIVAAVALYRPGPLEGGMVDDF 654 Query: 652 IDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRA 711 I+RKHGR+ + YP H L+PVL TYG+I+YQEQVMQIAQVL+GY+LG AD+LRRA Sbjct: 655 IERKHGRKRVEYP-----HPDLEPVLRDTYGVIVYQEQVMQIAQVLAGYSLGRADLLRRA 709 Query: 712 MGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQT 771 MGKK + MAK++ F GA + G++++LA ++FDL+ FAGYGFN+SHSAAY +SYQT Sbjct: 710 MGKKNKDVMAKEKDGFVTGATERGVDSKLAEQVFDLMAFFAGYGFNRSHSAAYGWISYQT 769 Query: 772 LWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHV----ND 827 +LK HYP EFMA +M+ D DNT+ +V + E MGL + PD+N F V +D Sbjct: 770 AYLKHHYPHEFMAGLMSCDQDNTDNIVKFIAEARAMGLVVARPDVNESAADFTVVVGEDD 829 Query: 828 DGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGA 887 I +G+GA+KGVG+G +EAIIE RN+ F +++ C R D++K NRRV+E L+ SGA Sbjct: 830 TKRIRFGLGAVKGVGQGAVEAIIECRNQDEKFISIYEFCRRVDSQKCNRRVIEALVKSGA 889 Query: 888 FDRL----GPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEP-------EQIEQ 936 FD L G HRA + ++ A+++ Q + GQ +FG++A + + + Sbjct: 890 FDGLSEDAGLHRARVFATIEAAMESGAQAQRDRRSGQTSLFGLIAAPEGDSGATADGMPE 949 Query: 937 SYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITA 996 +Y + WP + +L E+E+LG Y++GHP+++Y ++ RY + Sbjct: 950 TYPEVEEWPAKELLAFEKESLGFYISGHPLDRYRADLTRYANATTTDFLEGKRPAGPAAV 1009 Query: 997 AGLVVAARVMVTKRGN-RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVS 1055 G+V A R T++G+ +I L+D +G+LEV++F ++ ++ L D ++ SG+V Sbjct: 1010 GGVVSAYRERPTRKGDGKIAFFQLEDATGQLEVIVFPKTFERVRETLVLDEPILCSGKV- 1068 Query: 1056 FDDFSG---GLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGT 1112 D+ G +M E + R+ + I + Q+ + L Q L R G+ Sbjct: 1069 VDEGEGAQHAWRMLLEEATPLAHLRQSQTSRVDIHIAADQVTPDQIEALEQILTASR-GS 1127 Query: 1113 IPVHLYYQRADARAR-LRFGATWRVSPSDRLLNDLRGLIGSEQVELE 1158 L+ A + W V+PS+ LL + L G+ L Sbjct: 1128 CQAVLHLSIPRRSATSVWLDPRWNVAPSEELLARIERLFGAPVATLH 1174 >UniRef50_C5BQZ9 DNA polymerase III, alpha subunit n=10 Tax=Gammaproteobacteria RepID=C5BQZ9_TERTT Length = 1171 Score = 1331 bits (3444), Expect = 0.0, Method: Composition-based stats. Identities = 669/1168 (57%), Positives = 862/1168 (73%), Gaps = 17/1168 (1%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 FVHL+V +++S++D + + PL+++ A MPA ITD N GL+KFY A G+GIKP Sbjct: 2 NFVHLKVRTEFSLVDSIIRVKPLLQRVQAEAMPACGITDLHNFFGLLKFYRAAQGSGIKP 61 Query: 65 IVGADFNVQCDLLGD-ELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIE 123 I GADF + D +T+ A N GY+N+T LIS+++Q G P ID WL Sbjct: 62 ICGADFRIHKAGDDDLHPPLITLYAMNLAGYKNITALISRSFQEGQSMGEPYIDESWLEP 121 Query: 124 LNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLH 183 +EG+I LSG + G++G+ L+ +E + + DR++LEL RTGR ++E +LH Sbjct: 122 HSEGVIALSGAKFGEIGQLLVTNKLDEAEEKLQQMMGIYRDRFYLELQRTGRENDELHLH 181 Query: 184 AAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSE 243 AV LA PVVATNDVRF+DS F+ HE RV I +G TLDDP+R R YS +QY RS Sbjct: 182 RAVGLAAKLDCPVVATNDVRFLDSDQFEVHEARVCIGEGRTLDDPRRERRYSDEQYFRST 241 Query: 244 EEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKRAKEGLEE 302 EMCELFADIPEA+ NTVEIA+RCN+ + LG+YFLP++P + + ++ K +EGL+ Sbjct: 242 AEMCELFADIPEAIENTVEIARRCNLDILLGKYFLPEYPIPEGLTENEFFEKICREGLDL 301 Query: 303 RLAFLFPDEE-ERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPG 361 RL + + L+RR YDERL+ EL +I QMGFPGYFLIVM+FIQW+KD+ +PVGPG Sbjct: 302 RLERILDTSAPDYLERRKVYDERLKFELDIIIQMGFPGYFLIVMDFIQWAKDHKIPVGPG 361 Query: 362 RGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADM 421 RGSGAGSLVAY LKITDLDPL++DLLFERFLNPERVSMPDFDVDFCME RD+VI +VAD Sbjct: 362 RGSGAGSLVAYVLKITDLDPLQYDLLFERFLNPERVSMPDFDVDFCMEDRDKVIGYVADN 421 Query: 422 YGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQL 481 YGRDAVSQIITFGTMAAKAV+RDV RV G YG D++SK+IPPD GMTL KA+E E L Sbjct: 422 YGRDAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKMIPPDVGMTLTKAYEQEEIL 481 Query: 482 PEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQF 541 E + D + + + DMA +LEGVTRN GKHAGGVVIAPTK+ DFAPLYCD+ G VTQF Sbjct: 482 REFLQNDGDGQEIWDMALQLEGVTRNVGKHAGGVVIAPTKLIDFAPLYCDDTGGGLVTQF 541 Query: 542 DKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQ 601 DK+DVE AGLVKFDFLGLRTLTII+WA+ MI+++R + GEPPLDI+AIPLDD +FDML+ Sbjct: 542 DKNDVEDAGLVKFDFLGLRTLTIIDWAVTMIDQQRTRLGEPPLDISAIPLDDPTTFDMLK 601 Query: 602 RSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEI 661 ++ETTAVFQLESRGMKDLIKRLQPD EDMIALVALFRPGPLQSGMVD+FI+RKHGR ++ Sbjct: 602 KAETTAVFQLESRGMKDLIKRLQPDNLEDMIALVALFRPGPLQSGMVDDFINRKHGRAQV 661 Query: 662 SYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMA 721 +YPD ++QH SL+P+LEPTYG+I+YQEQVMQIAQVL+GYTLGGAD+LRRAMGKKKPEEMA Sbjct: 662 AYPDAKYQHTSLQPILEPTYGVIVYQEQVMQIAQVLAGYTLGGADLLRRAMGKKKPEEMA 721 Query: 722 KQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAE 781 KQRS+FA+GA+ GI+ +LAMKIFDLVEKFAGYGFNKSHSAAYALVSYQT WLKAHYPA Sbjct: 722 KQRSIFADGAKGLGIDPDLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTAWLKAHYPAH 781 Query: 782 FMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGV 841 FMAA M++DMD T+KVV ++EC M L +LPPD+N G + F V++D I+YG+GAIKG+ Sbjct: 782 FMAATMSSDMDKTDKVVTFIEECRTMKLNLLPPDVNRGEFQFTVDEDANIIYGLGAIKGL 841 Query: 842 GEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGP------HR 895 GEGP+E+I+EAR G F++LFD CAR D ++LN+R LE L+ SGA D LGP R Sbjct: 842 GEGPVESILEARKT-GPFKDLFDFCARVDGRRLNKRALEALVRSGALDNLGPGKDIDYDR 900 Query: 896 AALMNSLGDALKAADQHAKAEAIGQADMFGV---LAEEPEQIEQSYASCQPWPEQVVLDG 952 A + ++ +A+KAA+Q + G +D+FG ++E+ + + Q + + W + L+G Sbjct: 901 AVMHIAIAEAVKAAEQKSANANAGISDLFGEVVPVSEDRQSVYQDFHRVRRWSMKERLNG 960 Query: 953 ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012 E+ETLGLYLTGHPI++Y KE+ +V R+ + + + + AGLVVA RVM TKRG+ Sbjct: 961 EKETLGLYLTGHPIDEYDKELSNFVS-SRIFHLKAEKNKQTV--AGLVVAFRVMKTKRGD 1017 Query: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072 + TLDDR+GR+EV +F+DA ++ L KD +L+++GQVSFDD+SGGLKM A E+ D Sbjct: 1018 NMAFVTLDDRTGRIEVAVFSDAYSDNREKLVKDALLVITGQVSFDDYSGGLKMRADEITD 1077 Query: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRS-GTIPVHLYYQRADARARLRFG 1131 ++EAR+ R + + + + R+ ++ + G + + YQ+A A Sbjct: 1078 LNEARQASVRAIKLRWRSEALPLDYEKQFRELVKSYSGAGNCALIVDYQKAGVSATYTLS 1137 Query: 1132 ATWRVSPSDRLLNDLRGLIGSEQVELEF 1159 W V+P D L+ L+ L G++ VEL + Sbjct: 1138 QEWNVAPGDELVESLKMLYGNKNVELVY 1165 >UniRef50_Q2Z0E7 DNA polymerase III, alpha subunit n=1 Tax=uncultured candidate division WS3 bacterium RepID=Q2Z0E7_9BACT Length = 1160 Score = 1328 bits (3438), Expect = 0.0, Method: Composition-based stats. Identities = 464/1170 (39%), Positives = 697/1170 (59%), Gaps = 37/1170 (3%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M FVHL HS YS++DG + +V++A MPALAITD ++ G ++FY Sbjct: 1 MMHSDFVHLHNHSQYSLLDGACRIDRMVQRALEFRMPALAITDHGSMFGAIEFYSEAREH 60 Query: 61 GIKPIVGADFNVQCDLLGDEL--------THLTVLAANNTGYQNLTLLISKAYQRGYGAA 112 GIKPI+G + V ++ +HL +L N GY+NL L S +Y G+ Sbjct: 61 GIKPIIGMEAYVTPGSHAEKPAGKGMESYSHLLLLIRNAEGYRNLMKLSSASYVDGF-YY 119 Query: 113 GPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPD-RYFLELI 171 P +D++ L + +GL+ + G+ + +L GN E + E F D +LE+ Sbjct: 120 KPRVDKELLRKYGDGLLACTACLKGEPAQHVLAGNEDAARESIIELVEIFGDGHVYLEVH 179 Query: 172 RTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRP 231 G P+E A V L G+P+VA ND ++ AH++ + I G +D+P R Sbjct: 180 NHGMPEEAVIRQAYVRLGRELGVPLVAANDCHYVRREQAAAHDVLLCIQTGREIDEPNRM 239 Query: 232 RNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM--STE 289 R + + YM+S EEM ELF D P A NT+E+A++CN+ + +P+FP Sbjct: 240 RMPNDEFYMKSPEEMRELFLDCPGAYENTIEVAEKCNLQLDFDHVHMPEFPIPQGYTDAA 299 Query: 290 DYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQ 349 +L +EGLEER + P E + R EL +I QMGF GYFLIV +FI Sbjct: 300 AHLEALTREGLEERYETVTP----------EVEARAALELSMIGQMGFAGYFLIVHDFIH 349 Query: 350 WSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCME 409 ++ G+PVGPGRGS A S+V+YAL IT+LDPLEF L+FERFLNP R SMPDFD+DFC E Sbjct: 350 EARRRGIPVGPGRGSAAASIVSYALGITELDPLEFGLVFERFLNPARKSMPDFDIDFCYE 409 Query: 410 KRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGM 469 +R+++IE+V + YGR++V+QIITFGTM A+A IRDVGRVL PY VDR++K++P + + Sbjct: 410 RRNEIIEYVTEKYGRESVAQIITFGTMQARAAIRDVGRVLKFPYSEVDRVAKMVPRELNI 469 Query: 470 TLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLY 529 TL +A P+L + ++DE L+D A LEG+ R+A HA GV+IAP +I D+APLY Sbjct: 470 TLEEALAKTPELKALRDSDERYAKLLDYAGDLEGLARHASVHAAGVIIAPGRIDDWAPLY 529 Query: 530 CDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAI 589 +G+ TQ+ + + GL+KFDFLGLRTLT+I+ AL MI + R + P I Sbjct: 530 RSNKGE-ITTQYPMNSLARIGLLKFDFLGLRTLTVIHDALAMIRENRGIDLAP----DRI 584 Query: 590 PLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVD 649 PLDD +++++L T +FQ+ES GM+DL+++++P+ EDM A+ ALFRPGPL SGMVD Sbjct: 585 PLDDPETYELLGTGHTVGIFQVESSGMRDLLRKVRPERLEDMTAVNALFRPGPLGSGMVD 644 Query: 650 NFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLR 709 +++ RKHGR+++SY H L PVLE TYG++ YQEQVMQI+ L+G+++ AD+L Sbjct: 645 DYVKRKHGRQKVSY-----IHPKLAPVLEETYGVMAYQEQVMQISSALAGFSMSQADVLL 699 Query: 710 RAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSY 769 AM KK E+MA QR F G +NGI+ +A+K+FD +E F+GYGFNK HSA YA+++ Sbjct: 700 NAMRKKVVEQMATQREDFLAGCRENGISERIAVKVFDQMEFFSGYGFNKPHSACYAVLAV 759 Query: 770 QTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDG 829 +T +LK H+ EFMAA +T++MDN+++VV L EC R+G+++LPPD+N G F G Sbjct: 760 RTAYLKTHFAPEFMAATLTSEMDNSDRVVALTGECRRLGIRVLPPDVNEGHVEFRATSRG 819 Query: 830 EIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFD 889 +I +G+ A+K VG + +++ AR + G F ++FDL +R D + +NRRVLE L+ +GA D Sbjct: 820 DIQFGLSAVKNVGRAAVRSMVAARREHGSFEDVFDLTSRVDLRLVNRRVLESLVAAGALD 879 Query: 890 RLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEE--PEQIEQSYASCQPWPEQ 947 L HRA ++G AL + + GQ + +L + E + PWP+ Sbjct: 880 GLHGHRAQQYEAIGAALDLGQRAQRDRDSGQTSLMDILDTDAGSELRPRRLPEATPWPDG 939 Query: 948 VVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMV 1007 V L E+E LG+Y++GHP+ +Y KE+ + + D+ + + G++ + Sbjct: 940 VALAKEKEVLGMYVSGHPLARYEKELSTFATATTM-DLAEMVDDEPVRLGGIITHVKTTA 998 Query: 1008 TKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTA 1067 ++G ++ TL+D +G +E+++F+ K +++ +D +IV G+VS + K+ Sbjct: 999 DRKGEQMAFVTLEDFTGSVELVVFSSTYAKKSEIIRRDAAVIVDGKVSTRE-EEEPKVIV 1057 Query: 1068 REVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARAR 1127 +V+ + A ++ + IS+T ++ +L LR L H GT PV + + A Sbjct: 1058 ADVVSLSHAHGRFVERMTISITSVGFEESMLEDLRDVLLSH-GGTCPVDIVVKAASGEDV 1116 Query: 1128 LRFGATWRVSPSDRLLNDLRGLIGSEQVEL 1157 + RV PS L+ L ++G V L Sbjct: 1117 MISTGGMRVEPSRELVARLEDIVGETGVAL 1146 >UniRef50_B0TI36 DNA polymerase iii alpha subunit, putative n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TI36_HELMI Length = 1208 Score = 1326 bits (3432), Expect = 0.0, Method: Composition-based stats. Identities = 473/1229 (38%), Positives = 696/1229 (56%), Gaps = 101/1229 (8%) Query: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61 + RFVHL VHS+YS++DG A+ LV +AA L MPALAITD + G+++FY G Sbjct: 11 ANRRFVHLHVHSEYSLLDGAARIDKLVDRAAELDMPALAITDHGVMYGVIEFYKKAKARG 70 Query: 62 IKPIVGADFNVQCDLLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGP 114 +KPI+G + V + D HL +LA + GY+NLT L+S+A+ G+ P Sbjct: 71 VKPIIGCEVYVASRTMLDRDPQKDSDQHHLVLLAKDIEGYRNLTALVSQAHTEGF-YYKP 129 Query: 115 IIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRT 173 +D D L ++GLI LS G++ R LL E AFY + F D Y++EL Sbjct: 130 RVDHDRLARHSKGLIALSACLAGEIPRLLLNSQERQARERAAFYRDIFGCDNYYIELQDH 189 Query: 174 GRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRN 233 P ++ + + LA GL +VATNDV +++ D ++ + I G TL D +R + Sbjct: 190 DIPAQKQVNRSLIRLAGELGLGLVATNDVHYVERKDAYIQDVLLCIQMGKTLQDTERMKF 249 Query: 234 YSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGD-------- 285 + Y++S EM LF ++PEAL N++ IA+ C++ + LP +P D Sbjct: 250 DGAEFYLKSAREMAMLFGEVPEALFNSLAIAEACDLQFDFSKQHLPAYPIPDEPAFIQWR 309 Query: 286 -------------MSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVI 332 E YL +G+ R +R +Y RL ELQ I Sbjct: 310 REHERAPWPGLPWGDAEQYLTYLCSQGMTWR----------GCAKRDDYRRRLAFELQTI 359 Query: 333 NQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFL 392 +MGF GYFLIV +F +++ G+ VGPGRGS AGSLVAY L ITD+DP+E++LLFERFL Sbjct: 360 CRMGFAGYFLIVQDFCAFARREGILVGPGRGSAAGSLVAYVLGITDIDPIEYNLLFERFL 419 Query: 393 NPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHP 452 NPER+SMPD D+DF +R +VI++V YG D V+QIITFGTMAA+A +RDVGRVL P Sbjct: 420 NPERISMPDIDIDFDFVRRSEVIDYVVHKYGSDRVAQIITFGTMAARAAVRDVGRVLNLP 479 Query: 453 YGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHA 512 VD+++K IP + GMT+ KA E P+L + D+ + L++ AR +EG+ R+A HA Sbjct: 480 LADVDKVAKAIPAELGMTIEKAIEISPELRALC-QDQRISHLVETARAIEGMPRHASTHA 538 Query: 513 GGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMI 572 GVVIAP+ + D+ P+ +G TQF K VE GL+K D LGL+TLT+I ++ I Sbjct: 539 AGVVIAPSPLIDYLPVQRGADGG-VTTQFPKDTVEEIGLLKMDLLGLKTLTLIGDVIDKI 597 Query: 573 NKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMI 632 + R L + +PLDD K+F +L R+++ VFQLES G++ +++ L+P+ F+D+I Sbjct: 598 RRSRGL----QLKLKDLPLDDPKTFQLLSRADSLGVFQLESSGLRAILRELKPNSFDDII 653 Query: 633 ALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQ 692 ALVAL+RPGPLQSGMVD+FI RKHG+ + Y H +L+P+L+ TYG+ILYQEQVM+ Sbjct: 654 ALVALYRPGPLQSGMVDDFIRRKHGQTTVQY-----LHPALEPILKDTYGVILYQEQVMR 708 Query: 693 IAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFA 752 IA L+G+TLG ADMLRRAMGKKKP+ +A R F EG + I+ + A IFDL+E FA Sbjct: 709 IASELAGFTLGEADMLRRAMGKKKPDVIAGLRQQFVEGCAAHHISEKTAGDIFDLMEFFA 768 Query: 753 GYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKIL 812 GYGFNKSHSAAYAL++YQT +LKA+YP EFMA ++T+ D++EKV VDEC R+G+++L Sbjct: 769 GYGFNKSHSAAYALIAYQTAYLKANYPVEFMAGLLTSVADSSEKVAQYVDECQRLGIRVL 828 Query: 813 PPDINSGLYHFHVNDDG-----EIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCA 867 PPD+N+ F V D +I +G+ A+K VG G I+AI+ AR GG F L D C Sbjct: 829 PPDVNASEIDFSVVADPLTGGLQIRFGLAAVKNVGRGAIDAILLARETGGPFTSLDDFCT 888 Query: 868 RTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF--- 924 R D ++ NRRVLE LI +GA LG R L+ L ++ A + + A GQ ++F Sbjct: 889 RIDNRQANRRVLESLIKAGALSSLGK-RRPLLQILDKCMEVAARRQRDLATGQMNLFDFG 947 Query: 925 ---------------------GVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTG 963 G + + +P + +L E+E LG+Y +G Sbjct: 948 GFGGEGGRGEPFEAGALSDFSGFSSGLSAETAVPLPEIADFPHREILAMEKELLGIYFSG 1007 Query: 964 HPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRS 1023 HP+ + +E+ + + + P + + G++ A R TK+G + TL+D S Sbjct: 1008 HPLEELRPWLEQQISM-TIARIQPDNDQQKVKLGGVIHALRRTTTKKGQLMAYFTLEDWS 1066 Query: 1024 GRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKY--- 1080 G ++V++F +K + ++ D +IV G++ +++ ++ + ID A + Sbjct: 1067 GGVDVLVFPRTFEKCAEKIQDDAAVIVEGKIHYEE--ENKRIFCENLWAIDPALREKKVV 1124 Query: 1081 ---------ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG 1131 L + + + D +L H +G+ PV L + G Sbjct: 1125 EGKPNGETRQPVLHLWIPEASTDMAAREKLDAICRAH-AGSTPVQLNFLVDRKVVPKAVG 1183 Query: 1132 ATWRVSPSDRLLNDLRGLIGSEQVELEFD 1160 V+ S L + L+ ++++ ++ Sbjct: 1184 ----VTLSPALRSALKAHFREIRMKIVWE 1208 >UniRef50_Q1D042 DNA polymerase III, alpha subunit n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1D042_MYXXD Length = 1185 Score = 1325 bits (3430), Expect = 0.0, Method: Composition-based stats. Identities = 492/1203 (40%), Positives = 720/1203 (59%), Gaps = 65/1203 (5%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS F HL +H+ YS++DG + L+K GM ++A+TD N+ G + FY A Sbjct: 1 MS---FTHLHLHTLYSLLDGAIRMKDLIKTVKEKGMSSVAVTDHGNMFGAIDFYKKAKDA 57 Query: 61 GIKPIVGADFNVQCDLLGDEL-----THLTVLAANNTGYQNLTLLISKAYQRGYGAAGPI 115 GIKPI+G + V ++ HL ++A N GY NL L S AY G+ P Sbjct: 58 GIKPILGMEAYVAGPKGREDRSEKVSHHLILVAKNEEGYANLRYLSSTAYMHGF-YYHPR 116 Query: 116 IDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRTG 174 ID+ L E ++GL L+ G+V + RG+ Y++ F P +FLE+ G Sbjct: 117 IDKKVLAEHSKGLFALTACLGGEVTSACFRGDMDHARRAAQEYKDIFDPGHFFLEVQSNG 176 Query: 175 RPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNY 234 P+++ +L+ +P+ AT D +I D AHE+ + I G TL D KR ++ Sbjct: 177 MPEQDKANENLKQLSRDLDIPLCATADAHYIKREDARAHELLMCIASGKTLADGKRMKHS 236 Query: 235 SPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGD-MSTEDYLV 293 + + Y+ S EM E F DIPEA+ NT IA++CN+ ++LG+ LP F D + + Y+ Sbjct: 237 TDKLYVTSPTEMLEFFKDIPEAVHNTQRIAEQCNLELKLGKPMLPTFKVPDSHTPDSYMA 296 Query: 294 KRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKD 353 + A EGL ER L + R +Y RL E+ VI +MGF GYFLIV +FI W+K Sbjct: 297 ELAYEGLRERFTELAATVTYPID-REQYQARLALEIGVIQKMGFCGYFLIVQDFINWAKK 355 Query: 354 NGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQ 413 +PVGPGRGSGAGSLVAYAL+ITD+DP+ ++LLFERFLNPERVSMPDFD+DFC ++RD+ Sbjct: 356 MNIPVGPGRGSGAGSLVAYALRITDVDPIPYNLLFERFLNPERVSMPDFDIDFCQDRRDE 415 Query: 414 VIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAK 473 VI++V YG V QIITFG++ AK+V+RDV RV P+ DRI+KL+P +TL + Sbjct: 416 VIQYVGRKYGEMNVGQIITFGSLKAKSVLRDVCRVFALPFSEGDRIAKLVPEVLNITLRE 475 Query: 474 AFEAEPQLPEIYEADEEV----------KALIDMARKLEGVTRNAGKHAGGVVIAPTKIT 523 A E EP+L E+ E + + ++++A LEG+ R G HA GVVIA + Sbjct: 476 AIEMEPRLKEMMETPSNIGEVEGKPVTTRDVLEIALALEGLHRQPGMHAAGVVIADKPLW 535 Query: 524 DFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPP 583 +F P+Y K +TQF K +VE AGLVKFDFLGL+TLT+I AL+++ + K+ Sbjct: 536 EFVPVYQPPGEKTLITQFAKDEVEAAGLVKFDFLGLKTLTVIQHALDLVKRNHGKD---- 591 Query: 584 LDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPL 643 + IPL+D+K+++++ + +T +FQ+ES G +++ +L+P+CFED+IA AL+RPGPL Sbjct: 592 IPRHEIPLNDEKTWELMAKGDTAGIFQMESSGFTEMVVKLKPNCFEDVIAAGALYRPGPL 651 Query: 644 QSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLG 703 SGMVD FI+RKHGRE++SYP H +L+PVL+ TYG+I+YQEQVMQI+QVL GYTLG Sbjct: 652 DSGMVDVFINRKHGREKVSYP-----HPALEPVLKDTYGVIVYQEQVMQISQVLGGYTLG 706 Query: 704 GADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAA 763 AD+LRRAMGKKK E M +R+ F EG KN ++ ++A +IFDL+EKFA YGFNKSHSAA Sbjct: 707 RADLLRRAMGKKKAEVMQAERAGFLEGCAKNNVDLKVAGEIFDLMEKFAEYGFNKSHSAA 766 Query: 764 YALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHF 823 Y LV+ T WLKAHYP EFMAA+++++ DNT+KVV + E GL++LPPD+N F Sbjct: 767 YGLVTIHTAWLKAHYPCEFMAALLSSEKDNTDKVVKHIGEARESGLEVLPPDVNQSDMEF 826 Query: 824 HVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLI 883 G+I +G+GAIKGVGEG IE+I+EAR K G F+ LFD C R D++K+NR+V+E L+ Sbjct: 827 GAVS-GKIRFGLGAIKGVGEGAIESILEAR-KDGSFKSLFDFCERVDSRKVNRKVMEALV 884 Query: 884 MSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQ-----IEQSY 938 +G+FD R + +++ A+ K +A GQ+ +FG+LA ++ Y Sbjct: 885 KAGSFDFEKRSRRQIFDTIEKAMNRGSASQKDKAAGQSSLFGMLAGPSSDGGGGGLKDDY 944 Query: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998 + W E+ L E+E +G Y++GHP++QY KE++RY + + + +T AG Sbjct: 945 VEVEDWSEKERLSLEKEAIGFYVSGHPLHQYDKELKRYARPITA--VQRARKDDKLTVAG 1002 Query: 999 LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDA---------------------LDK 1037 +V R TK G R+ T++D SG +E++ F + Sbjct: 1003 IVTVLRERPTKTGKRMAWVTIEDLSGSIELVCFPGKDGTRNVMGRDGKWAKQGPKPGFEN 1062 Query: 1038 YQQLLEKDRILIVSGQV---SFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQID 1094 ++ LL+ D ++VSG V D+ + ++ ++ + REK + L + + + Sbjct: 1063 WEHLLKSDDPILVSGTVQISQRDEDTPTPELIVDDIQSLKAVREKRTKRLELRVPADLLT 1122 Query: 1095 DQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSEQ 1154 ++ + +L + + + +G PV + L + +V +D LL + L G Sbjct: 1123 EERVAKLHELAKKY-AGATPVAVSVLFKGEGEALIGNTSIKVQVNDDLLLAVDRLFGMRV 1181 Query: 1155 VEL 1157 VE Sbjct: 1182 VEF 1184 >UniRef50_C6BS12 DNA polymerase III, alpha subunit n=4 Tax=Desulfovibrio RepID=C6BS12_DESAD Length = 1175 Score = 1319 bits (3415), Expect = 0.0, Method: Composition-based stats. Identities = 472/1196 (39%), Positives = 712/1196 (59%), Gaps = 59/1196 (4%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MSE FVHL VH++YS++DG + L ++A GMPA+AITD ++ G V FY Sbjct: 1 MSE--FVHLHVHTEYSLLDGAIRIKDLCQQAKDFGMPAVAITDHGSMFGAVTFYMTAMDM 58 Query: 61 GIKPIVGADFNVQCDLLGDE----------LTHLTVLAANNTGYQNLTLLISKAYQRGYG 110 GIKPI+G + V + DE HL +LA N GY+N+ L S + G+ Sbjct: 59 GIKPIIGCEVYVAPGDIDDELAHTRKDKKGRYHLVLLAKNQQGYKNIIKLCSLGFLEGFH 118 Query: 111 AAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170 P + + L + +EG+I LS G+V R+L+ E YE FP ++LE+ Sbjct: 119 Y-KPRVSKYLLNKYSEGVIALSACLAGEVPRALMNEGLDAGIEMAKTYESIFPGNFYLEV 177 Query: 171 IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230 G ++E + AE GLP+VATND ++ D++AH++ + I T+D KR Sbjct: 178 QANGLKEQEDLNELIYKCAEQTGLPLVATNDCHYLTKEDYEAHDLLLCIQTQTTVDAEKR 237 Query: 231 PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STE 289 R + Q Y + +EE E FA +PEA+ANT +IA+ CN+ + LG Y+ P++ + + E Sbjct: 238 FRMGTDQLYFKPQEEFEEYFAHVPEAIANTQKIAEMCNLEIELGNYYFPEYELPEGMTIE 297 Query: 290 DYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQ 349 VK KEGL++R+ + +E +Y ERL+ EL VIN+MGFP YFLIV +FI Sbjct: 298 TEFVKLCKEGLQKRIENAPYEIDE-----AKYWERLDYELGVINEMGFPAYFLIVQDFIN 352 Query: 350 WSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCME 409 W+KDN +PVGPGRGS AGS+VA+AL+IT+LDP+ +DLLFERFLN ERVSMPD DVDFC Sbjct: 353 WAKDNRIPVGPGRGSAAGSIVAWALRITNLDPIPYDLLFERFLNVERVSMPDIDVDFCER 412 Query: 410 KRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP-- 467 +R +V+++ ++ YG D V+QI T+GTM KAVI+DVGR +G + D I+KL+P DP Sbjct: 413 RRLEVVKYCSEKYGWDHVAQITTYGTMKTKAVIKDVGRAMGMHFSETDPIAKLVPDDPAV 472 Query: 468 ----------GMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVI 517 +T+ A EA P+L + D ++ L+D+A +LEG++R+A HA GVVI Sbjct: 473 IAQGLGVKKAKITVPNAVEAIPELSNMVATDPKIAKLMDIATRLEGMSRHASTHAAGVVI 532 Query: 518 APTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRA 577 + +TD+ PLY ++G+ VTQ+D VE GL+KFDFLGLRT+T+I L++I + Sbjct: 533 SDKPMTDYLPLYKGKKGE-IVTQYDMKKVEKVGLIKFDFLGLRTMTVIEDCLDIIRLQGK 591 Query: 578 KNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVAL 637 + D+ + LDD+ +FD+ + +T VFQ+ES GM+ ++ L+P CFED+IA++AL Sbjct: 592 EAP----DLDTLTLDDQDTFDIFCKGDTDGVFQVESSGMRKYLRMLRPSCFEDIIAMLAL 647 Query: 638 FRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVL 697 +RPGPL SGMVD FI RKHG E++Y +L+P L+PTYG+I+YQEQVM A + Sbjct: 648 YRPGPLGSGMVDEFIKRKHGEIEVTYLW-----PTLEPSLKPTYGVIVYQEQVMGAAMTI 702 Query: 698 SGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFN 757 + Y+LG D+LRRAMGKK PEEMAK R F +GA++N I + A IFDL+E+FA YGFN Sbjct: 703 ANYSLGEGDLLRRAMGKKIPEEMAKHRVRFVDGAKENNIPEQTANDIFDLMEQFAAYGFN 762 Query: 758 KSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDIN 817 KSHSAAYAL+SY T +LKAH+P EFMAA+M+ +M+NTEK++ ++ C M + + PDIN Sbjct: 763 KSHSAAYALISYYTAYLKAHFPVEFMAALMSTEMNNTEKIIMYINACRDMDVTVRQPDIN 822 Query: 818 SGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRR 877 G+ F V + G+I+YG+ IK VGE I+ I+E R K G F++ D R + +++ +R Sbjct: 823 LGVARFSVYE-GDIIYGMAGIKNVGEEAIDEIVEERQKNGPFKDFIDFITRVNLRRVTKR 881 Query: 878 VLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQS 937 V+E LI +GAFD +G R+ L+ SL A+ + K + G +M +L E E + Sbjct: 882 VIEYLIRAGAFDSMGLTRSGLIASLDKAVSYGQKKNKEKESGMINMLDMLGGGGEAEEPA 941 Query: 938 YA-----SCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGK 992 + ++ + E+E LG YLT HP+ Y E+ R +G +++ Sbjct: 942 VVSFEEFNMPEMDDKEMQRLEKEALGFYLTCHPLLSYRNEMSR-LGLQTIENCPNLAHEA 1000 Query: 993 VITAAGLVVAARVMVTKR-GNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVS 1051 I ++ + ++TK+ G ++ T++D +G E+++F ++ Q L +D L++ Sbjct: 1001 TIKLGAIITGYKEIITKKSGKKMAFATIEDMTGSGELIIFPKTYEEVHQYLGQDIPLLIK 1060 Query: 1052 GQVS-------FDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQS 1104 G+V ++ K+ E+ ++ A+ + +S+ ++ + L+ Sbjct: 1061 GKVDNPPPEEGQEEAMPESKVMCDEISPLENAQAGCQEAVPLSVHHSLCSEEGIAELKAI 1120 Query: 1105 LEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLND--LRGLIGSEQVELE 1158 L + G+ P+ L D+ LR G T+ + P+ + L G+ + +L+ Sbjct: 1121 LAGY-PGSAPITLQMFLPDSICTLRLGHTYNIKPNGDFWKEFNLWRKNGNGKAKLQ 1175 >UniRef50_C0Z7W1 DNA polymerase III alpha subunit n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z7W1_BREBN Length = 1142 Score = 1319 bits (3414), Expect = 0.0, Method: Composition-based stats. Identities = 458/1163 (39%), Positives = 689/1163 (59%), Gaps = 42/1163 (3%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL VH++YS++DG A+ LVK+A+ LGM ALA+TD NL G + FY A AGI+PI Sbjct: 4 FVHLHVHTEYSLLDGAARIDTLVKRASELGMHALAMTDHANLYGAIPFYKACLEAGIRPI 63 Query: 66 VGADFNVQCDLLGDE------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRD 119 +G + V L D +HL VLA N TGY+NL L + A G P ++++ Sbjct: 64 IGMELYVIEGNLQDRVRNAPPPSHLIVLAENETGYRNLLRLATIANTDG-NYILPRLNKE 122 Query: 120 WLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPD-RYFLELIRTGRPDE 178 L + +GLI LSG + G+V + LL G + E Y+ F + ++LEL G E Sbjct: 123 VLAKHTDGLIALSGCQQGEVAKLLLAGEADTAKEAALRYQRMFGEQHFYLELADHGLEVE 182 Query: 179 ESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQ 238 V+L++ G+P++ATN+V +I D H+I +AI +G T+ + R R + Q Sbjct: 183 RRLNTRLVKLSQETGIPLIATNNVHYIHREDHQQHDILLAIKEGKTIGEENRFRYETDQY 242 Query: 239 YMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKRAK 297 Y++S EEM LFA P+ALANTV +A RC + + G + LP+FP + + YL + + Sbjct: 243 YLKSAEEMAALFAFAPQALANTVAVADRCKLDLTFGAHILPEFPLAEGQDSTQYLRELCE 302 Query: 298 EGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVP 357 +G ER + P E RL+ EL +I GF YFLIV +F++++ +NG+P Sbjct: 303 KGCLERYGEITP----------EAQARLDHELAIITGTGFTDYFLIVWDFMRYAHENGIP 352 Query: 358 VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEH 417 GPGRGS AGSLVAY LKIT++DPL F LLFERFLNPERV+MPD D+DF +E+RD+VI + Sbjct: 353 TGPGRGSAAGSLVAYVLKITNVDPLRFQLLFERFLNPERVTMPDIDIDFSVERRDEVIHY 412 Query: 418 VADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEA 477 VA YG D V+QIITFGTMAA+A +RDVGR LG G VDR++K+IP PGMT+ +A + Sbjct: 413 VASKYGHDRVAQIITFGTMAARAAVRDVGRALGLSLGIVDRVAKMIPQSPGMTIERAMQI 472 Query: 478 EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHP 537 P + ++ +++ LI+ AR +EG+ R+A HA GVVI+ +T++ PL EG Sbjct: 473 NPDIGKLCAENKQAAQLIETARGVEGLPRHASTHAAGVVISREPLTNYVPLQTGNEG-LA 531 Query: 538 VTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSF 597 +TQ+ +E GL+K DFLGLR LTII L R + LD+ +P DD+K+F Sbjct: 532 LTQYPMEILEEVGLLKMDFLGLRNLTIIQETL-----RHLQEQGISLDLDKLPTDDEKTF 586 Query: 598 DMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHG 657 ML R ETT +FQLES GM+++++ L+P +D+IA++AL+RPGP++ ++ +I KHG Sbjct: 587 RMLSRGETTGIFQLESSGMRNVLRDLKPSSLDDIIAVLALYRPGPME--IIPQYIAAKHG 644 Query: 658 REEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKP 717 ++ Y H L+P+L T+G ++YQEQ+MQI+ L+G++LG AD+LRRA+GKKK Sbjct: 645 TSKVQYA-----HPVLEPILRETHGFMIYQEQIMQISSTLAGFSLGEADILRRAVGKKKR 699 Query: 718 EEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAH 777 E +A+QR F G + G EL +++DL+ +FA YGFNK+HS AYA+++YQ +LKA Sbjct: 700 ELLAEQREKFVAGCVRQGYGDELGNQVYDLIVRFADYGFNKAHSVAYAIIAYQMAYLKAT 759 Query: 778 YPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGA 837 YP FMAA+++ + + ++ +E R+ L +L PD+N L F V D I +G+ A Sbjct: 760 YPLAFMAALLSLSIGSQTRIAEYTEEARRLQLTVLGPDVNKSLAFFTVEQD-AIRFGLAA 818 Query: 838 IKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAA 897 +K VG G IE+I++ R KG +R++FD CAR D + +NRRV+E L + GA D L HR Sbjct: 819 VKNVGYGAIESIVKER-KGRPYRDVFDFCARVDARLVNRRVVESLTLCGALDSLPGHRNQ 877 Query: 898 LMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQ-SYASCQPWPEQVVLDGERET 956 L+ L +A+ A+ Q ++F + E Y P L ER+ Sbjct: 878 LLLLLDEAVGKANNKRIERDANQLNLFAGEEDAAPLREPAEYPEVPPLSHTQQLKEERDL 937 Query: 957 LGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGI 1016 +G+Y++GHP++Q+ R + + R K + G++ AR + TK+G+ + Sbjct: 938 IGVYISGHPLDQFAHVASR-PEVTVISSLGDVPRDKTVKVFGMITEARRIQTKKGDPMAF 996 Query: 1017 CTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEA 1076 TL+D++ +E+++F KY QLLE+++I++ +V + +K+ A V D Sbjct: 997 ITLEDKTAPVELVVFPQVYAKYAQLLEREQIIVAEARVDHQE--DMVKLLASRVWDAQTL 1054 Query: 1077 REKYARGL-AISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWR 1135 + + + + ++ Q D L +L + + GTIPV L+Y+ R +R Sbjct: 1055 PQPKSETVLFVKISAEQEHDSTLQKLSRLFVE-KKGTIPVILFYE--GKRQTIRLPEANW 1111 Query: 1136 VSPSDRLLNDLRGLIGSEQVELE 1158 V + L R ++G + V + Sbjct: 1112 VVVDESFLEQAREIVGPDSVIRK 1134 >UniRef50_B6FXS8 Putative uncharacterized protein (Fragment) n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6FXS8_9CLOT Length = 1192 Score = 1316 bits (3407), Expect = 0.0, Method: Composition-based stats. Identities = 464/1210 (38%), Positives = 700/1210 (57%), Gaps = 78/1210 (6%) Query: 3 EPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGI 62 E F HL VH++YS++DG ++ LVK+A GM A+AITD + G + FY A GI Sbjct: 5 EKNFTHLHVHTEYSLLDGFSRVKTLVKRAKEKGMTAVAITDHGCMFGAIDFYKAAKAEGI 64 Query: 63 KPIVGADFNVQCDLLGDELT-------HLTVLAANNTGYQNLTLLISKAYQRGYGAAGPI 115 KPI+G + L D+ HL +LA + GY+NL ++SK+Y G+ P Sbjct: 65 KPIIGCEVYTAPRKLTDKDPNYDKHQGHLVLLAKDMVGYKNLIKIVSKSYVDGF-YYKPR 123 Query: 116 IDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPD-RYFLELIRTG 174 D D L + ++GLI LS GDV R+++ GN + Y + F + Y+LE+ G Sbjct: 124 TDMDELKKHSQGLIALSACLAGDVPRAIMNGNYDKARKLAMEYRDIFGNGNYYLEIQDHG 183 Query: 175 RPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNY 234 P+++ V L+ +P+VATNDV ++D D +I + + T+DD R + Sbjct: 184 LPEQKQVNTEVVRLSRELNIPLVATNDVHYVDKDDAKIQDILMCLQMQKTIDDENRMKFP 243 Query: 235 SPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLV 293 S + Y++S EEM +LF ++ EAL NT EIA+RCNV +Y LP++ + +T Y Sbjct: 244 SDEFYLKSREEMEQLFPELEEALDNTNEIAERCNVEFEFHKYHLPRYDVPEGYTTNGYFR 303 Query: 294 KRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKD 353 + ++GL ER P+ EY ERLE EL I MG+ YFLIV +FI ++K Sbjct: 304 ELCQKGLVERYGEDCPE---------EYKERLEYELNTIENMGYVEYFLIVWDFINFAKQ 354 Query: 354 NGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQ 413 N + VGPGRGS AGS+VAY LKITD+DP+++ LLFERFLNPERVSMPD D+DFC E+R++ Sbjct: 355 NNIMVGPGRGSAAGSIVAYTLKITDIDPMKYSLLFERFLNPERVSMPDIDIDFCYERREE 414 Query: 414 VIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAK 473 VI++V YG D V+QIITFGTM AK IRDV RVL Y D+I+K IP + GMT+ K Sbjct: 415 VIDYVKRKYGEDHVAQIITFGTMGAKIAIRDVARVLNVSYNKADQIAKEIPFELGMTIDK 474 Query: 474 AFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEE 533 A ++ P L E+YE+D E + +ID++++LEG R+A HA GVVIA + ++ PLY ++ Sbjct: 475 AMDSNPTLVELYESDAEAREVIDISKRLEGTLRHASTHAAGVVIARNPVDEYVPLYKHQD 534 Query: 534 GKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNG-EPPLDIAAIPLD 592 TQF + +E GL+K DFLGLRTLT+I AL++I R G +D + + D Sbjct: 535 S--ITTQFTMTTLEELGLLKMDFLGLRTLTVIRDALDLIELNRDIKGYTEHIDFSKMEYD 592 Query: 593 DKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFI 652 D + F+ L + T VFQLES GM++ +K+L+P+ FED++A ++LFRPGP+ S + +I Sbjct: 593 DDEVFETLSQGNTLGVFQLESSGMRNFMKQLKPNSFEDIVAGISLFRPGPMDS--IPTYI 650 Query: 653 DRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAM 712 + K+ E+++Y ++ L+P+LE TYG ++YQEQVMQ+ + L+GY+ G +D++RRAM Sbjct: 651 ENKNNPEKVTY-----INDKLRPILEVTYGCLVYQEQVMQVVRDLAGYSYGRSDLVRRAM 705 Query: 713 GKKKPEEMAKQRSVFAE------------GAEKNGINAELAMKIFDLVEKFAGYGFNKSH 760 KKK + M ++R F G +NGI+ E A KIFD + FA Y FNKSH Sbjct: 706 SKKKMDVMEEERQYFIHGKFDDEGNIEIPGCIRNGISEEDANKIFDDMIDFARYAFNKSH 765 Query: 761 SAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGL 820 +AAY +++Y+T +LK HYP EFMAA+MT+ M N++KVV + EC +G+ + PPDIN Sbjct: 766 AAAYGVLAYETAYLKVHYPVEFMAALMTSIMGNSDKVVEYIRECNAIGIPVNPPDINKSF 825 Query: 821 YHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLE 880 F V D I +G+ A+K VG IE I++ R + G F++ D R DTK N+RV+E Sbjct: 826 SKFSVEGD-SIRFGLAAVKNVGVNIIENIVKEREENGEFKDFVDFAKRLDTKDTNKRVVE 884 Query: 881 KLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQ---- 936 LI GAFD++ +RA LM L++ K GQ +F + + E+ + Sbjct: 885 SLIKCGAFDQISENRATLMAGYESVLESISMDRKKNVQGQISLFDAFSTQVEEAPEMQLS 944 Query: 937 -SYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERY--VGGVRLKDMHPTE---- 989 + + + E+ L+ E+E LG+YL+GHP+++Y E++R + ++ ++ E Sbjct: 945 TNLPVVREFSEKERLNMEKEVLGMYLSGHPLSEYKSELDRKTSINMKKINELKEDEKTYM 1004 Query: 990 --RGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRI 1047 + + G+V+A R+M TKR + TL+D G +EV++F L K+ LL D I Sbjct: 1005 KLHDREVIMGGMVIAKRIMTTKRNEIMAFITLEDLYGTIEVVVFPQTLKKFNILLNDDSI 1064 Query: 1048 LIVSGQVSFDDFSGGLKMTAREVMDIDE--------------AREKYARGLAISLTDRQI 1093 +++ G +S DD K+ AR++ DI+E + + +++ + Sbjct: 1065 ILIKGAISIDD--DEAKLIARDIKDINEEYRFNSEKISFDTRSNSNKPKNKQMNVRIDTV 1122 Query: 1094 DDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRV-----SPSDRLLNDLRG 1148 D+ L ++ G + L D + T++V + + L +L Sbjct: 1123 GDEELLMKVFTITRKYPGRDRLVL--LPKDQNIDMSKPITYKVPGMYINADEELKKELGS 1180 Query: 1149 LIGSEQVELE 1158 L+G +E+E Sbjct: 1181 LVGKLNIEIE 1190 >UniRef50_A3EVF9 DNA polymerase III, alpha subunit n=3 Tax=Leptospirillum RepID=A3EVF9_9BACT Length = 1201 Score = 1316 bits (3405), Expect = 0.0, Method: Composition-based stats. Identities = 481/1183 (40%), Positives = 688/1183 (58%), Gaps = 47/1183 (3%) Query: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61 S +FVHL VH+ YS++DG K PL++KA A MPA+A+TD NL G ++F+ G Sbjct: 3 STDQFVHLHVHTQYSLLDGANKIDPLIRKARAENMPAIAMTDHGNLFGAIEFFQTAKKHG 62 Query: 62 IKPIVGADFNVQCDLLGDEL-------------------THLTVLAANNTGYQNLTLLIS 102 +KPI+G + + D HL +LA N+TGY+NL ++S Sbjct: 63 VKPIIGCEVYITPRSRFDRQDLYFGGDGPHQAKKINNASFHLILLAENDTGYRNLLKIVS 122 Query: 103 KAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF 162 ++ G+ P ID + L +EGLI LSG G + L RG++ + E F Sbjct: 123 LSHLEGF-YYRPRIDLELLSRHHEGLIALSGCLKGQISYMLTRGDTDRAYATAGLFREIF 181 Query: 163 -PDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHD 221 P+ YF E+ G D+ + L++ +P+VATND +++ D H+I + + Sbjct: 182 GPENYFFEVQANGLEDQRIANREIIGLSKKLSIPLVATNDCHYLEREDSVPHDILLCLQT 241 Query: 222 GFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF 281 G TL+DP R R S + Y+++ EM F ++PEA+ NT+ IA R +V++ L +P + Sbjct: 242 GKTLEDPARLRFGSDEFYLKTPREMVRSFEELPEAIENTLRIADRIDVSIDLQTTHMPSY 301 Query: 282 PTGDM-----STEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMG 336 + + + V+ ++EGL+ R + E+ Y ERLE E+QVI +MG Sbjct: 302 RLDENQGQTTTVPELFVRTSREGLDARFQENTFSDTEKAL----YLERLEREIQVIQKMG 357 Query: 337 FPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPER 396 + GYFLIV +FI+ +++ G+PVGPGRGS AGS+VA++L+IT++DP+ F LLFERFLNPER Sbjct: 358 YEGYFLIVWDFIRKAREMGIPVGPGRGSAAGSVVAWSLRITNIDPIRFGLLFERFLNPER 417 Query: 397 VSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFV 456 VS+PD DVDFCM +R +VI++V D YG D V+ I TFGTM AK IRDVGRVLG Y V Sbjct: 418 VSLPDIDVDFCMNRRGEVIQYVVDRYGMDRVAMIATFGTMGAKGSIRDVGRVLGMTYAEV 477 Query: 457 DRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVV 516 DR++K+IP MTL KA E P L + E D ++ L ++RKLEG+TR++ HA GVV Sbjct: 478 DRVAKMIPNSLDMTLEKALEENPDLRALLEKDPRMEELFSLSRKLEGITRHSSIHAAGVV 537 Query: 517 IAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRR 576 I+ + + PL G+ VTQF K DVE GLVKFDFLGL TLT+I A I Sbjct: 538 ISREPLLEHVPLMRGANGE-IVTQFTKDDVEKVGLVKFDFLGLTTLTLIQGAENRIQAHT 596 Query: 577 AKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVA 636 P IPLDD +++ +L +T +FQLESRGM DLI ++QP+ FED+IAL+A Sbjct: 597 -----PDFSADRIPLDDARTYRLLSEGKTLGIFQLESRGMTDLIMKMQPETFEDLIALLA 651 Query: 637 LFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQV 696 L+RPGP+ SGMVD+FI RK EI Y L+PVL TYG+I+YQEQVMQIA V Sbjct: 652 LYRPGPINSGMVDDFIKRKKNPREIRYEL-----PELEPVLRETYGVIVYQEQVMQIANV 706 Query: 697 LSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGF 756 L+G++LG AD+LRRAMGKKKPEEMAK + F +GA + G E A +F+L+ FAGYGF Sbjct: 707 LAGFSLGEADLLRRAMGKKKPEEMAKMQDKFVDGAIRKGFPKEKATHVFELMAYFAGYGF 766 Query: 757 NKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDI 816 NKSHSAAYAL+SYQT +LKAHYP E AA++T +D+TEK+ + MG+++L PDI Sbjct: 767 NKSHSAAYALISYQTAYLKAHYPLELWAALLTNALDDTEKIGVFLAGAKDMGIEVLAPDI 826 Query: 817 NSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNR 876 N + F + I++G+GA+K VG+ ++ I+EAR G F + D R KK+NR Sbjct: 827 NQSEFDFAILPGSRILFGLGAVKNVGKQAVDCILEARANDGPFVDFPDFLKRIVGKKVNR 886 Query: 877 RVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQ 936 RV+E LI +GAF LG R+ M SL D L A++ + Q +F + Sbjct: 887 RVIEALIRAGAFRSLGIRRSVAMESLDDLLAWAEKQKSGKGSLQKSLFSE-DQGGRSSGP 945 Query: 937 SYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITA 996 W E+++L E+ LG YLT HP+ +Y + + + + + G+ + Sbjct: 946 PLREVPEWDERMLLREEKNALGFYLTSHPMARYADLLLK-LDTRSTRSLESVSEGETVRV 1004 Query: 997 AGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSF 1056 +V A R + TK+G+++ TL D G +E +LF D + Q+ L+ D ++V+G + Sbjct: 1005 FAVVSALREVKTKKGDKMAQLTLLDMEGTIEAVLFPDVYAQVQEKLQTDLPILVTGPLER 1064 Query: 1057 DDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVH 1116 +DF K+ V I +A E + + + L + + L L+Q L + G +P Sbjct: 1065 NDFGS--KIRVTRVETIGQALETLYQTVVVRLQTDGLSVKDLEDLKQILLGY-PGPVPAV 1121 Query: 1117 LYYQRADARARLRF-GATWRVSPSDRLLNDLRGLIGSEQVELE 1158 L + + G VSPSD L++ L G G + V + Sbjct: 1122 LELKVMTRPYPVAVIGLHLNVSPSDELVHALSGRFGEQAVVRK 1164 >UniRef50_B5YEZ7 DNA polymerase III alpha subunit n=2 Tax=Dictyoglomus RepID=B5YEZ7_DICT6 Length = 1127 Score = 1315 bits (3404), Expect = 0.0, Method: Composition-based stats. Identities = 443/1152 (38%), Positives = 695/1152 (60%), Gaps = 51/1152 (4%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL VH++YS++DG + L+ +A MPA+AITD + G++ FY GIKPI Sbjct: 3 FVHLHVHTEYSLLDGACRIDELIDQALEFNMPAVAITDHGVMYGVIDFYKNAKEKGIKPI 62 Query: 66 VGADFNVQCDLLGDEL-----THLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 +G + V D+ HL +LA + GY+NL ++S ++ G+ P +D++ Sbjct: 63 IGCEVYVAPGSRFDKKQRTDLYHLILLAKDFEGYKNLIKIVSLSFLEGF-YYKPRVDKEL 121 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 180 L E ++G+I LS G++ +L+ N + Y + F + ++LEL G ++E Sbjct: 122 LREYSKGIIALSSCLAGEIPSYILQNNLEKAKNAIKEYLDIFGEDFYLELQNNGMEEQEY 181 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 ++L+ +P+VATNDV ++ D + H+I + I G L+D R R + + Y Sbjct: 182 VNSYLIKLSRELNVPLVATNDVHYLRKEDAEIHDILLCIQTGSKLNDKDRLRFKTNEFYF 241 Query: 241 RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMST-EDYLVKRAKEG 299 +S EEM LF D+P+A+ NT++IA++CNV + L LP F + T + Y + EG Sbjct: 242 KSPEEMKALFKDVPDAIENTLKIAEKCNVEIPLNNVILPVFEVPEGETLDSYFERLCWEG 301 Query: 300 LEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVG 359 ++R P+ ERL E+ VI QMGF GYFLIV +F+ ++K G+PVG Sbjct: 302 AKKRFGEDIPEN---------IRERLSYEISVIKQMGFSGYFLIVQDFVNYAKSRGIPVG 352 Query: 360 PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVA 419 PGRGS AGSLV+Y L IT+++P + L+FERFLNPERV+MPD D+DFC E+R++VIE+V Sbjct: 353 PGRGSAAGSLVSYVLGITNIEPTRWGLIFERFLNPERVTMPDIDIDFCFERREEVIEYVR 412 Query: 420 DMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEP 479 + YG++ V+QIITFGTMAA+A +RDVGRVL PY VDRI+KLIP P ++ +A Sbjct: 413 NKYGKEHVAQIITFGTMAARASVRDVGRVLDVPYNEVDRIAKLIP--PNTSIEEALNTSE 470 Query: 480 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 539 +L + E + + K +I++A+++EG R+A HA G+VI+ + ++ PL G VT Sbjct: 471 ELRNLVENNPQAKRIIEIAKRIEGNARHASIHAAGIVISKDPLMEYVPLQ-VMNGTDVVT 529 Query: 540 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 599 Q +++E GL+K DFLGLRTLT+I ++ I + +DI I L D+K +++ Sbjct: 530 QLPMTNLEELGLLKMDFLGLRTLTVIYDTIKKIKENYGIE----IDINNISLSDEKVYEL 585 Query: 600 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 659 LQ+ ET VFQLESRGM++L++ ++P+ FED+IA++AL+RPGPL G ++++I RK G E Sbjct: 586 LQKGETIGVFQLESRGMRNLLRDIKPEKFEDLIAVLALYRPGPL--GRLESYIKRKRGEE 643 Query: 660 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 719 ++ Y H +L+P+L TYG+I+YQEQVM+IA L+G+TLG AD+LRRAMGKKKPE Sbjct: 644 KVEY-----MHPALEPILAETYGVIIYQEQVMEIAHRLAGFTLGQADVLRRAMGKKKPEV 698 Query: 720 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 779 M +QR +F +GA + GI +A++IF+ + KFA YGFNKSHSAAYA VS+QT +LKA+YP Sbjct: 699 MEEQRGIFVKGAVERGIPENVAIEIFEDMAKFAEYGFNKSHSAAYAFVSFQTAYLKAYYP 758 Query: 780 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 839 E+MA+++T+ ++T K+ + E R+G+KILPPD+N + F V G I +G+ AIK Sbjct: 759 KEYMASLLTSVKNSTTKLSKYIAEAKRIGIKILPPDVNESVVDFTVTPQG-IRFGLSAIK 817 Query: 840 GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 899 VGE EAI+E R++ G F+ +FD R +K +N+R LE LI SGAFD G R AL+ Sbjct: 818 NVGESVAEAIVEERSR-GRFKSIFDFIKRLSSKVINKRALESLIKSGAFDSFGYSRRALL 876 Query: 900 NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 959 ++ L++A + IGQ + + + E+I + + +L+ E+E LG Sbjct: 877 ENIDKILESAQVMKR-AHIGQVSLIDLESLPQEEI---INNMPEFSIDEILEMEKEMLGF 932 Query: 960 YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTL 1019 Y++ P + K E+ + D+ E G + G++ R ++ ++ ++ TL Sbjct: 933 YVSYDPQEELRKISEKLFDY-TIDDLVEVESGSQVIVPGILKNVREVIDRKNQKMLFATL 991 Query: 1020 DDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVS--FDDFSGGLKMTAREVMDIDEAR 1077 +D +G E+ +F+ Y+ +L++ + +I+SG++ D+ +K+ +V D++ Sbjct: 992 EDFTGEAEITVFSSVYGNYKDILKEGKKVIISGKLEIDRDESEERIKIIVDQVGDLE--- 1048 Query: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVS 1137 + L I L +I ++L ++R+ L ++ G +PV + + + + V Sbjct: 1049 ---SNILVIQLD-NKIGYEVLFKVREIL-KNKKGLVPVIIRFD----EHAILTAPDFWVF 1099 Query: 1138 PSDRLLNDLRGL 1149 + L +L L Sbjct: 1100 YDEELRKNLESL 1111 >UniRef50_D2RIQ1 DNA polymerase III, alpha subunit n=3 Tax=Veillonellaceae RepID=D2RIQ1_ACIFE Length = 1138 Score = 1314 bits (3402), Expect = 0.0, Method: Composition-based stats. Identities = 471/1168 (40%), Positives = 675/1168 (57%), Gaps = 47/1168 (4%) Query: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 +FVHL H+ YS++DG + LV+ A LGMPALAITD + G+++FY AGIK Sbjct: 2 NQFVHLHTHTQYSLLDGSCRIPELVQYAKELGMPALAITDHGVMYGVIEFYQECEKAGIK 61 Query: 64 PIVGADFNVQCDLLGDEL-------THLTVLAANNTGYQNLTLLISKAYQRGYGAAGPII 116 PI+G + + D+ HL +LA N TGYQNL L+S G+ P I Sbjct: 62 PIIGCEVYITSGSHLDKSLETRSKLYHLILLAENRTGYQNLMKLVSIGEVEGF-YYKPRI 120 Query: 117 DRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRTGR 175 D+D L +EGLI LS G+V R +LRG ++ + Y + F D Y+LE+ G Sbjct: 121 DKDVLRRYSEGLICLSACIAGEVPRHILRGELETAEKTMLEYLDIFGRDHYYLEIQNHGL 180 Query: 176 PDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYS 235 P+E + LA+ G+ +VATND+ +I D +I + I DP+R R + Sbjct: 181 PEEATVRQELRRLAQKHGIKLVATNDLHYIRKEDASGQDILLCIQTNTRYLDPQRMRFNN 240 Query: 236 PQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTED-YLVK 294 Y++S EEM ELF + EAL NT+EIA+RCNV + G LP+FP T D YL K Sbjct: 241 DSYYLKSREEMEELFPEDQEALDNTLEIAERCNVQLEFGHLLLPEFPLPPGETMDGYLRK 300 Query: 295 RAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDN 354 +EG R +R+E EL +I QMG+ GYFLIV +FI +S+ + Sbjct: 301 LCEEGFPSRYPE----------DDGTARKRMEYELGIIRQMGYSGYFLIVWDFINYSRRH 350 Query: 355 GVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQV 414 +PVGPGRGS AGS+VAY IT +DPL+++L+FERFLNPERVSMPD D D C KR V Sbjct: 351 DIPVGPGRGSAAGSIVAYLTGITSIDPLKYNLIFERFLNPERVSMPDIDTDICYVKRHLV 410 Query: 415 IEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKA 474 ++++A YG V+QIITFGT+AAKA ++DVGR + P V++++KLIP PG TL A Sbjct: 411 VDYLARKYGESHVAQIITFGTLAAKAAVKDVGRAMDIPLNVVNQVNKLIPNTPGTTLKGA 470 Query: 475 FEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLY----C 530 E +L E+ + D + L+D A+K+EG+ R+ HA GVVI P ++TD+ PL Sbjct: 471 LEGSRELRELRDGDPSIAQLLDFAQKVEGMPRHTSTHAAGVVITPGELTDYVPLQITSSS 530 Query: 531 DEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIP 590 D+E ++ TQ+DK E GL+K D LGLRTLT+I+ AL+MI K + +DI I Sbjct: 531 DDEHEYICTQYDKDRSESLGLLKMDLLGLRTLTVIDDALKMIKKNQGTE----VDIRTID 586 Query: 591 LDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDN 650 L D K+ ML + +T AVFQ+ES GM L+K+L P+ FED+I LVAL+RPGPL SGM ++ Sbjct: 587 LHDPKTCRMLCKGDTAAVFQMESDGMTRLMKQLAPEGFEDLIPLVALYRPGPLGSGMAED 646 Query: 651 FIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRR 710 FI +HGR Q H ++P++ TYG+ILYQEQVMQI L G+TLG AD+LRR Sbjct: 647 FIAGRHGRRT-----AQVLHPLMEPIVADTYGVILYQEQVMQIVSALGGFTLGEADILRR 701 Query: 711 AMGKKKPEEMAKQRSVFAEGAEK-NGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSY 769 AMGKKK + + + F +GA+K +GI+ EL +IF L++ FAGYGFNKSHSAAYALV+Y Sbjct: 702 AMGKKKAKLLDSMKEKFLDGAQKLHGISRELGSEIFALLQHFAGYGFNKSHSAAYALVAY 761 Query: 770 QTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDG 829 T WLKA+YP E+MAA + + + +KV + C MG+++LPPDIN+ F V+ Sbjct: 762 HTAWLKANYPVEYMAAFLNSIITVADKVSWYIGVCRDMGIQVLPPDINTSEAGFSVDGH- 820 Query: 830 EIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFD 889 I +G+GAIK VG+ + I+E R K G FR+ FD R D K+N+RV+E LI G+ + Sbjct: 821 TIRFGLGAIKSVGDAAVTVILEERKKRGPFRDFFDFTRRVDLSKVNKRVVEALIKCGSMN 880 Query: 890 RLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVV 949 G R+ L+ + AL+AA + GQ +FG + + P+ + Sbjct: 881 GFGLRRSQLLAIMDPALEAAASEQRDRITGQLGLFGE-EDIASANTIPIPNLPEIPKAEI 939 Query: 950 LDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTK 1009 L ERE +G Y+TGHP++ Y + R +R + + G+ I G++ R+ TK Sbjct: 940 LRLERELIGFYVTGHPLDAYRNALRRLTPLIRCTE-ENYKDGERIAVGGIITDLRLRSTK 998 Query: 1010 RGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTARE 1069 G+R+ L+D +G L V+ F A + ++KDRI+++ G + D+ ++ A Sbjct: 999 NGDRMASFVLEDLTGSLTVIAFPRAYAASRANIDKDRIVMIQGILKLDE--EQARIFANR 1056 Query: 1070 VMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLR 1129 V + EA A+ + + + + + +L G PV+L+ AD + +R Sbjct: 1057 VEPLQEA----AKEVHLHIRPGKNTQAVQQQLGGIFAAFH-GKNPVYLHV--ADTKKVIR 1109 Query: 1130 FGATWRVSPS-DRLLNDLRGLIGSEQVE 1156 + V + + ++G +E Sbjct: 1110 TNPRFWVDLDAPGFADAIERVLGKGSME 1137 >UniRef50_Q2LTT3 DNA polymerase III alpha subunit n=3 Tax=Deltaproteobacteria RepID=Q2LTT3_SYNAS Length = 1155 Score = 1314 bits (3400), Expect = 0.0, Method: Composition-based stats. Identities = 464/1174 (39%), Positives = 681/1174 (58%), Gaps = 37/1174 (3%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M FVHL VH+ YS++DG + L+ KA GM A+A+TD N+ G + FY A Sbjct: 1 MKIETFVHLHVHTQYSLLDGTIRIKDLISKAKEFGMQAVAMTDHGNMFGTIDFYQAACKE 60 Query: 61 GIKPIVGADFNVQCDLLGDELT--------HLTVLAANNTGYQNLTLLISKAYQRGYGAA 112 GIKPI+G + V ++ HL VLA + GYQNL L S Y G+ Sbjct: 61 GIKPIIGCELYVAPKTRFEKTGGSIGDTARHLLVLAKDYQGYQNLMKLSSLGYLDGF-YY 119 Query: 113 GPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPD-RYFLELI 171 P +D++ L + ++GLI LS G++ +L+ Y + F + ++LE++ Sbjct: 120 RPRVDKELLKKYHKGLIALSACLNGEIANYILKDKFKDALLAAENYRQIFGEHNFYLEIM 179 Query: 172 RTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRP 231 G P++++ +E++ +PV ATND +++ D ++HE+ + I G TLDD R Sbjct: 180 ENGLPEQKTANEGLLEISRQLSIPVAATNDCHYLNREDAESHEVLLCIQTGKTLDDSDRM 239 Query: 232 RNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTG-DMSTED 290 R + Y RS ++M +LF PEA+ NT EIA RCN++ G+++LP+F D + ED Sbjct: 240 RFSTDAFYFRSPDDMKQLFNYCPEAVENTKEIADRCNLSFEFGKFYLPKFEVSSDETLED 299 Query: 291 YLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQW 350 L K A +GL ER+ + + E + R Y++RL EL++I MGF GYFLIV +F+ + Sbjct: 300 RLEKVAIQGLAERMPPIVDERGEEV--RGIYEKRLADELKIIKSMGFAGYFLIVSDFVSY 357 Query: 351 SKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEK 410 +K +PVGPGRGS AGSLVAYAL ITD+DP+ +DL FERFLNP+R+SMPD D+DFC E Sbjct: 358 AKRMNIPVGPGRGSAAGSLVAYALTITDIDPIRYDLFFERFLNPDRISMPDIDIDFCPEG 417 Query: 411 RDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMT 470 R +I +V + YG D VSQIITFG M A+AVIRDVGR L PYG VD I+KL+P ++ Sbjct: 418 RGDIIRYVTEKYGEDKVSQIITFGKMQARAVIRDVGRALNIPYGEVDSIAKLVPNILNIS 477 Query: 471 LAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYC 530 L A E EP+L E + DE+++ L+ +++ LEG+ R+A HA GVVI+ + + PLY Sbjct: 478 LDDAMEMEPRLQEAAKRDEKIRKLLKLSKSLEGLNRHASVHAAGVVISDVPLVERVPLYK 537 Query: 531 DEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIP 590 + TQF +D+ GL KFDFLGL+TLT+I AL I + + LD+ +P Sbjct: 538 SPKDD-VTTQFSMNDLSTVGLTKFDFLGLKTLTVIKNALSFIKEGLGTD----LDLKNLP 592 Query: 591 LDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDN 650 L+D +F +L + ET VFQLES GMK+++ R++PDC ED+IAL+AL+RPGP+ M+ Sbjct: 593 LNDADTFKLLSKGETDGVFQLESDGMKEILVRMKPDCIEDLIALIALYRPGPM--NMIPE 650 Query: 651 FIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRR 710 FI RK G+ I Y + + L+ +L+ TYG+ILYQEQVMQIA V++ Y++ AD LR+ Sbjct: 651 FIARKQGKTPIIY-----EIDQLEGILKETYGVILYQEQVMQIASVIAQYSMSEADTLRK 705 Query: 711 AMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQ 770 MGKK +M +R F EGA+ NGI + KI++ +E FA YGFNKSHS AYA+V+YQ Sbjct: 706 VMGKKDTAKMETERPKFMEGAKANGIPEQKTRKIWEQMETFASYGFNKSHSTAYAMVTYQ 765 Query: 771 TLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGE 830 T +LKAHYP EFMAA++T++ DN +K++ + C MG+ ILPPDIN F V + Sbjct: 766 TAYLKAHYPVEFMAALLTSEKDNRDKIIKYIHVCKEMGIAILPPDINESQRDFSVAGN-R 824 Query: 831 IVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDR 890 I +G+ AIK VG G I+A+I +R KGG F D C RTD KK+N+RVLE LI GAFD Sbjct: 825 IRFGLAAIKNVGLGAIDAMISSRQKGGEFLSFEDFCNRTDLKKVNKRVLESLIKCGAFDS 884 Query: 891 LGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSY-----ASCQPWP 945 G R LM+ + ++ + + K +A QA F + + + ++SY A Q W Sbjct: 885 TGQRRRQLMSEYENIIEISQKRQKDKASKQASFFDDMEDLGVEEKRSYANSSAAEIQEWD 944 Query: 946 EQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARV 1005 + +L E+E LG Y+TGHP+ Y +I + + ++ AG+V R Sbjct: 945 PKELLAHEKEFLGFYVTGHPLEGYASKISMVANTDSAGIL-EKGDKEPVSLAGIVSGIRE 1003 Query: 1006 MVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKM 1065 + T++ + +L+D G +V+ F + K +L D + V G + + +K+ Sbjct: 1004 VFTRKKEIMAYVSLEDLKGATDVIFFPEIYKKVTDILHGDAPIFVKGILDVAE--ENVKV 1061 Query: 1066 TAREVMDIDEAREKYARGLAISLT--DRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRAD 1123 A E + E + + + D L++RL Q L + G +L+ Sbjct: 1062 IAEEASLLSETEYNPFSSVHFMVDIENNGTSDHLVDRLHQ-LTKNYKGKYDAYLHLINGS 1120 Query: 1124 ARARLRFGATWRVSPSDRLLNDLRGLIGSEQVEL 1157 ++ G ++S S L + ++G + Sbjct: 1121 CETKIYLGDKAKLSISPELKREANIILGEGVMIF 1154 >UniRef50_Q67RP9 DNA polymerase III alpha subunit n=4 Tax=Clostridia RepID=Q67RP9_SYMTH Length = 1252 Score = 1312 bits (3397), Expect = 0.0, Method: Composition-based stats. Identities = 442/1108 (39%), Positives = 653/1108 (58%), Gaps = 49/1108 (4%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M P FVHL +H++YS++DG + PL ++AA LGM A+A+TD L G++ FY A Sbjct: 26 MGRPEFVHLHLHTEYSLLDGANRIEPLARRAAELGMRAMAMTDHGVLFGVLPFYKAMRNH 85 Query: 61 GIKPIVGADFNVQCDLLG-----DELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPI 115 G+KPI+G + V ++ HLTVLA N TGY+NL L+S Y G+ P Sbjct: 86 GVKPIIGCELYVAPGSRHVKSGGEKPYHLTVLAENYTGYKNLVKLVSAGYTEGF-YYKPR 144 Query: 116 IDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRTG 174 +D + L EGLI+LSG G+V + L G + Y E F PD YFLEL G Sbjct: 145 VDLELLNTYREGLIVLSGCLAGEVAQKFLAGQPEEARRAIGRYREIFGPDHYFLELQDLG 204 Query: 175 RPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNY 234 P+++ + +GLPVVATND ++ D ++ + I T+DDP R R Sbjct: 205 LPEQQGLNRFLL----EQGLPVVATNDAHYLRPQDARTQDVLICIGTNKTIDDPNRMRMG 260 Query: 235 SPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLV 293 + + Y++S EEM F +P AL N++ IA+RCNV + LG+ LP + YL Sbjct: 261 TSELYVKSAEEMYWRFGHVPGALENSLAIAERCNVELPLGQIHLPHYALPPGYDAPGYLR 320 Query: 294 KRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKD 353 K E + R P+ ERLE EL VI MGF GYFLIV +F+++++ Sbjct: 321 KLCYERIGPRYGGRPPEGAM---------ERLEHELNVIISMGFAGYFLIVWDFVEFARS 371 Query: 354 NGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQ 413 G+PVGPGRGSGA SLVAY L ITD+DPL + LLFERFLNPERV MPDFD+DFC E+R + Sbjct: 372 RGIPVGPGRGSGASSLVAYVLGITDVDPLRYGLLFERFLNPERVDMPDFDIDFCYERRGE 431 Query: 414 VIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAK 473 VIE+V + YG + V+Q+ITF TMAA+A +RDVGR LG YG VDR++KL+P G +L Sbjct: 432 VIEYVHNKYGAECVAQVITFNTMAARAAVRDVGRALGMSYGEVDRVAKLLPW--GQSLDA 489 Query: 474 AFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEE 533 A E +L +YE EE++ LID AR +EG+ RN HA GVVI + + PLY + Sbjct: 490 ALEKTEELRTLYEEREEIRTLIDTARAVEGMPRNPSVHAAGVVITADPLVEHVPLYKMGD 549 Query: 534 GKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDD 593 VTQFD ++ GL+K DFLGLRTLT+I+ A++ + + +P DI IP+DD Sbjct: 550 -DSIVTQFDMDQLKEIGLLKMDFLGLRTLTVIDHAVKFVRQ-----YQPDFDIERIPMDD 603 Query: 594 KKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFID 653 +++ M+ R ET +FQ+E+ + D++++++P FED+IA ++L RPGP++ + ++I Sbjct: 604 PETYAMIARGETLGLFQIEAGWVADVLRQMKPTRFEDIIATISLCRPGPMEH--IPDYIA 661 Query: 654 RKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMG 713 K + Y H L+P+L TYG+++YQEQ++QIA +L+G +LG AD+LRRA+ Sbjct: 662 GKQNPAGVKY-----LHPDLEPILSETYGVMVYQEQIIQIAHLLAGLSLGQADLLRRAIA 716 Query: 714 KKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLW 773 KKK E+M K +F E E+ G + E+A ++D + +FA YGFNK H+ YA V+YQT + Sbjct: 717 KKKREDMEKYGRLFMEALEQRGYSHEVATALYDQMIRFANYGFNKCHATPYAKVAYQTAY 776 Query: 774 LKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVY 833 LK H+P FMAA+M + M K+ ++EC R+G+++LPPD+N+ F V D I + Sbjct: 777 LKRHHPVAFMAALMNSVMGQEAKLALYIEECRRLGIQVLPPDVNTSFARF-VPDGRTIRF 835 Query: 834 GIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRL-- 891 G+GA+K +G ++AI+ AR +GG F L DLC R D + LNRR LE LIM+GAFDR+ Sbjct: 836 GLGAVKNIGWNAVDAIVAAREEGGPFTSLRDLCERVDLRPLNRRALESLIMAGAFDRVAP 895 Query: 892 ----GPHRAALMNSLGDALKAADQHAKAEAIGQADMFGV-LAEEPEQIEQSYASCQPWPE 946 R+ ++ +L L A + + GQ +F + +A E+ +P Sbjct: 896 PGGRPARRSQMLEALDKILDDAQKLQRHRQAGQISLFDLGVAGPGTAGEEPLPDIPEFPP 955 Query: 947 QVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVM 1006 Q +L E+E LG Y++GHP+ QY + + G + + + G + G+V + + Sbjct: 956 QRLLAMEKEVLGFYVSGHPLRQYQAALAAH-GCLPVAALPEQRDGARVAVGGMVAGLKQV 1014 Query: 1007 VTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMT 1066 T+ G + TL+D++G++EV++F L ++L +++ L+V G++ + +K+ Sbjct: 1015 TTRSGANMAFLTLEDQTGQVEVVVFPRVLQACARVLREEQPLLVRGRLQVQE--DEVKLL 1072 Query: 1067 AREVMDI--DEAREKYARGLAISLTDRQ 1092 A EV + DE + I + Q Sbjct: 1073 ADEVSLLRDDEKPRRPEPPERIEVGAAQ 1100 Score = 51.4 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 32/79 (40%), Gaps = 3/79 (3%) Query: 1080 YARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPS 1139 + + + + R + ++ R+ Q L H G V + + + RV+ + Sbjct: 1177 QPQFVYLRVPARDENSPMMRRVEQVLRAH-PGPTRVRIKMEPEGKW--IEVHEHLRVTVT 1233 Query: 1140 DRLLNDLRGLIGSEQVELE 1158 L+N L ++G + V + Sbjct: 1234 PSLVNALARIVGEQSVVVR 1252 >UniRef50_B3DUG0 DNA polymerase III, alpha subunit n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DUG0_METI4 Length = 1159 Score = 1304 bits (3375), Expect = 0.0, Method: Composition-based stats. Identities = 465/1166 (39%), Positives = 678/1166 (58%), Gaps = 40/1166 (3%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 FVHL +HS+YS++D A+ +V KA LGMPA+A+TD NL G + FY A IKP Sbjct: 4 NFVHLHLHSEYSLLDASARIKDVVSKAKQLGMPAVALTDHGNLYGTIDFYKACVSQNIKP 63 Query: 65 IVGADFNVQCDLLGDE------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDR 118 I+G + + D + H+T+LA NN GY+NL LISKA+ G+ P ID Sbjct: 64 IIGCEAYITSGSRFDRKGSRSHIYHMTLLAKNNQGYKNLLKLISKAHLEGF-YYKPRIDL 122 Query: 119 DWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRTGRPD 177 + L E GLI SG G++ + +L G+ + F P+ ++LE+ G + Sbjct: 123 ELLKEHKAGLIGTSGCMNGEIPQKILEGDLKGAKKLAEELSRLFDPNCFYLEIQNHGLKE 182 Query: 178 EESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQ 237 E+ + A++ GLP+VATNDV +++ D H++ + I + DPKR + P+ Sbjct: 183 EKEIREVLADFAQSLGLPLVATNDVHYVEQEDAQFHDVLLCIGTASQIHDPKRKKYPCPE 242 Query: 238 QYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF--PTGDMSTEDYLVKR 295 Y ++ ++M ELF + P+A+ NT IA+ C+VT+ LG+ P + P+ + +YL Sbjct: 243 FYFKTPQQMAELFNEFPQAVENTANIARLCDVTIELGKNHFPSYTLPSPYKTHGEYLRTL 302 Query: 296 AKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNG 355 EGL++R + + ERLE EL VI Q GF YFLIV +FI ++K G Sbjct: 303 CYEGLQKRYDNI----------SEQIKERLEYELSVIEQTGFSSYFLIVWDFIHYAKKEG 352 Query: 356 VPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVI 415 +PVGPGRGS AGSL AY L ITD+DP+++ L+FERFLNP+RVS PD D+DFC +R QVI Sbjct: 353 IPVGPGRGSAAGSLTAYVLGITDIDPIKYGLVFERFLNPQRVSPPDIDIDFCYNRRSQVI 412 Query: 416 EHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAF 475 ++V YG +V+QIITFGT+ AK +RDV RVLG Y DRI+K+IPPDP +TL +A Sbjct: 413 DYVRKKYGERSVAQIITFGTLGAKMAVRDVARVLGMSYQEADRIAKMIPPDPQLTLERAR 472 Query: 476 EAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGK 535 E PQL +++E D + + ++ +A KLEG+TR AG HA GVVI+ + DF PL E + Sbjct: 473 ELNPQLDQLWENDPQSREVLTIATKLEGLTRQAGVHAAGVVISEGDLLDFIPLSRGEHNE 532 Query: 536 HPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKK 595 VTQ+ + GL+K DFLGL+TLT+I+ L +I ++ LD PLDDK Sbjct: 533 -IVTQWSMEPIAEIGLLKMDFLGLKTLTVISECLALIKEK----ENILLDPKQFPLDDKN 587 Query: 596 SFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRK 655 ++++L R +T VFQLES GM +L+K+L+P ED+IALVAL+RPGP++ + + DRK Sbjct: 588 TYELLGRGQTIGVFQLESSGMVELVKKLKPGNIEDIIALVALYRPGPME--NIPAYADRK 645 Query: 656 HGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKK 715 G+ I+Y H L+P+L+ TYG+++YQEQVMQ A VL+GY+LG +D+LRRAMGKK Sbjct: 646 LGKVPITY-----DHPLLEPILKDTYGVMIYQEQVMQAANVLAGYSLGESDLLRRAMGKK 700 Query: 716 KPEEMAKQRSVFAEGAE-KNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWL 774 KPEEM KQR F +G + KN I E A++IF+ +EKFAGYGFNK+HSA Y ++Y T +L Sbjct: 701 KPEEMRKQRDQFIKGCKEKNNIPEEKAIQIFETLEKFAGYGFNKAHSACYGYLAYVTAYL 760 Query: 775 KAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYG 834 KA+YP ++ +++ + +TEK+ LV EC RMG+ +LPPDI+ F V G I +G Sbjct: 761 KANYPVFYLCTLLSYESGDTEKIELLVSECRRMGIGVLPPDISKSEVRFSVEG-GSIRWG 819 Query: 835 IGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPH 894 + AIK VGE EAI+E+R K G + LFDLC R + LN+++LE LI SGA D LG Sbjct: 820 LSAIKNVGEAAAEAIVESRKKRGSYHSLFDLCLRISGRTLNKKILESLIKSGACDSLGRS 879 Query: 895 RAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGER 954 R L+ SL AL A +K GQ ++F QS A + +P + L E+ Sbjct: 880 RKELLESLPAALSAGSITSKERLSGQQNLFEEHNFIDPTDRQSSAKGEDYPLNIRLHWEK 939 Query: 955 ETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRI 1014 E LG YL+ HP+++++ I + + + + G++ +++ + Sbjct: 940 ELLGTYLSSHPLDEWMSWIRLFQN-EPISSLKELADNSRLYVPGMITHIEKKTSQKSKKP 998 Query: 1015 GI-CTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDI 1073 L+D++G +EV+LF D L +V GQ+S + + + + + I Sbjct: 999 YFKLILEDQTGHIEVILFKDNLSSSLIDHWTTTAFVVDGQLSCRE--NAVSIRSEHLYTI 1056 Query: 1074 DEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHL-YYQRADARARLRFGA 1132 +EA + L I++ + Q +L + +R G IPV Y + + G Sbjct: 1057 EEALQSLPTSLVITVKEGQGGADPWKKLYELFLENR-GDIPVVFRYVKNEGIICNIEVGR 1115 Query: 1133 TWRVSPSDRLLNDLRGLIGSEQVELE 1158 + V S + L L + LE Sbjct: 1116 EFFVKLSIPFMEKLFSLFTPGSINLE 1141 >UniRef50_A8ZSF2 DNA polymerase III, alpha subunit n=6 Tax=Deltaproteobacteria RepID=A8ZSF2_DESOH Length = 1182 Score = 1302 bits (3371), Expect = 0.0, Method: Composition-based stats. Identities = 445/1168 (38%), Positives = 664/1168 (56%), Gaps = 32/1168 (2%) Query: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61 + P FVHL VH+ YS++DG+ + L+K+A GM A+AITD + G+V FY AG Sbjct: 6 TGPDFVHLHVHTAYSLLDGIIRIEALMKRAVEYGMGAVAITDHGTMFGVVSFYKEAVKAG 65 Query: 62 IKPIVGADFNVQCDLLGDELT-------HLTVLAANNTGYQNLTLLISKAYQRGYGAAGP 114 IKP++G + V + D HL +LA GY+NL L S A +G+ P Sbjct: 66 IKPVIGCECYVAPRSITDRTPMDHDGLSHLVLLAETMEGYRNLCHLASIASLKGF-YHKP 124 Query: 115 IIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDR-YFLELIRT 173 ID++ L + GLI LS G+V + LL GN+ D FY+E + +FLE+ Sbjct: 125 RIDKELLKQYGNGLIGLSACLKGEVAQRLLEGNTEAADRAARFYQEALGENSFFLEVQNN 184 Query: 174 GRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRN 233 G P++ A E+++ +P+V TND ++D D + H++ + + G T+ D R R Sbjct: 185 GIPEQTRLNAALREMSDRLSIPLVGTNDCHYLDREDHNIHDLSLCLQTGKTIHDADRFRF 244 Query: 234 YSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMST-EDYL 292 + Q + + EMC P A NTV IA RCNV + P F T T + Sbjct: 245 ETDQLNFKPKHEMCTFLEPFPNAATNTVAIADRCNVELDFKTLHFPVFATPPGKTVDQLF 304 Query: 293 VKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSK 352 + +EG RL + + R YD RLE EL VI MGFP YFLIV +FI +K Sbjct: 305 EETVREGFARRLKAVARKNPDF--DREAYDRRLEFELSVITDMGFPSYFLIVADFIAHAK 362 Query: 353 DNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRD 412 +NG+P+GPGRGS AGS+V+YA+ ITDLDP+E LLFERFLNPER SMPD DVD C+ R+ Sbjct: 363 ENGIPIGPGRGSAAGSIVSYAMGITDLDPIEHGLLFERFLNPERKSMPDIDVDICIIGRE 422 Query: 413 QVIEHVADMYG-RDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL 471 +V ++ + YG D V+QIITFG+M ++AVIRDVGRV+G P VDRI+KLIP +L Sbjct: 423 RVYHYLVEKYGGSDYVAQIITFGSMKSRAVIRDVGRVMGIPLSDVDRIAKLIPM--NKSL 480 Query: 472 AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCD 531 +A EP L ++ ++ + L+ R LEG+ R+A HA GVVI +T++ PLY Sbjct: 481 DEALAEEPDLKKLVDSRPDFAELVAAGRALEGMPRHASTHAAGVVIGDKPLTEYLPLY-A 539 Query: 532 EEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPL 591 + +TQ+D VE GLVK D LGLR LT+I L+++ ++ + D++ + L Sbjct: 540 VKENEALTQYDMKCVEAIGLVKLDLLGLRNLTVIADTLKILQQQGRQVP----DMSHLDL 595 Query: 592 DDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNF 651 D+K++ +L +TT VFQLES GMK+L+ +L+P F D+ ALVAL+RPGP+ SGM+ +F Sbjct: 596 ADEKTYQLLCAGKTTGVFQLESTGMKELLLKLKPTTFADITALVALYRPGPMGSGMLVDF 655 Query: 652 IDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRA 711 ++ +HGR+ + Y L+P+L+ TYG+I+YQEQVMQIAQ ++GYT+G AD LR+A Sbjct: 656 VECRHGRKRVEY-----LIPELEPILKETYGVIVYQEQVMQIAQAVAGYTMGTADDLRKA 710 Query: 712 MGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQT 771 MGKK +MA+ ++ F EGA GI+ A +++ ++ F YGFNKSHSAAYALV++QT Sbjct: 711 MGKKIAAKMAEHQATFIEGALARGIDKAKAETLYEQIKFFGEYGFNKSHSAAYALVAFQT 770 Query: 772 LWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEI 831 +LKAH+P E MAA++T+ + T VV + EC + +++LPPDIN F V D + Sbjct: 771 AYLKAHFPVELMAALLTSSTNKTIDVVKFIAECRALDIEVLPPDINESEVAFSVVGD-RL 829 Query: 832 VYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRL 891 +G+ A+K VGEG IEAI+E R G F +FDLC R K+N++VLE L+ GA D Sbjct: 830 RFGLLAVKNVGEGAIEAIVEERRANGRFVSIFDLCERVPLTKVNKKVLESLVKCGALDST 889 Query: 892 GPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLD 951 G RA + L DAL + + Q +F + + + W ++ L Sbjct: 890 GAGRAQMTAVLEDALAHGQTVQREKNDSQMSLFDMPGADAALNAPTLPDMPEWSDRQRLA 949 Query: 952 GERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRG 1011 E+E LG Y++GHP+ Y + +Y L + + G + TKRG Sbjct: 950 FEKEVLGFYVSGHPLAAYRDVLRKYANTDALT-LKEIADQSNVIIGGGITVVNRKTTKRG 1008 Query: 1012 NRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVM 1071 +++ I T++D G +EV++F D + + L +D ++ V G++ + S ++ A V+ Sbjct: 1009 DQMAIVTIEDMYGTVEVVVFPDLFEVVRGFLAEDALVFVQGKLESSEVSTAIQ--AERVV 1066 Query: 1072 DIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADAR--ARLR 1129 +D A + + + ++ + D Q L +L + + H +G L+ + + Sbjct: 1067 PLDRAEDVWLPSVHCTIDPVKTDKQTLRKLHEVFKQH-AGAYSAFLHITAPPGKAGTLIA 1125 Query: 1130 FGATWRVSPSDRLLNDLRGLIGSEQVEL 1157 T ++ L + + L+G V++ Sbjct: 1126 LPDTMKLDSDAALFDKVNDLLGYSAVQV 1153 >UniRef50_Q1IN02 DNA polymerase III, alpha subunit n=2 Tax=Acidobacteria RepID=Q1IN02_ACIBL Length = 1159 Score = 1302 bits (3370), Expect = 0.0, Method: Composition-based stats. Identities = 448/1171 (38%), Positives = 683/1171 (58%), Gaps = 33/1171 (2%) Query: 3 EPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGI 62 P FVHL +H+DYSM+DG + LV + LG PA+A+TD N+ G V F A G+ Sbjct: 2 PPEFVHLHLHTDYSMLDGASDVEKLVARVKELGQPAVAMTDHGNIYGAVHFQNAAKEKGV 61 Query: 63 KPIVGADFNVQCDLLG------DELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPII 116 K I+G + + D+ HL VLA N GY+NL ++S+A G+ P + Sbjct: 62 KAILGCELYICQKENHREAPEGDKYNHLIVLAENEEGYRNLVKIVSEASLHGF-YYKPRV 120 Query: 117 DRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRTGR 175 +++L E ++GLI LS G+V L G + + + F + ++LE+ G Sbjct: 121 SKNFLAEHSKGLIGLSACLKGEVAERLTEGKYEAAKKAATTFGDIFGANNFYLEIQDQGL 180 Query: 176 PDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYS 235 +E+ +L + G P+VATND ++ D A ++ V I G ++ D R + + Sbjct: 181 EEEKRIHQGLFDLEKDLGYPMVATNDSHYLCEDDSHAQDVMVCIQTGKSIHDTNRMKFST 240 Query: 236 PQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVK 294 Q +++S EM ++F LA T+EIA+RCNV + + P+F + S + Y Sbjct: 241 NQFFVKSAHEMSQVFTGADRVLARTMEIAERCNVKLEKVKNPFPRFDVPEGMSIDSYFED 300 Query: 295 RAKEGLEERLAFLFPDEEERLKRR--PEYDERLETELQVINQMGFPGYFLIVMEFIQWSK 352 A+ G+ +R+ + + R EY+ERL E+ I +M FPGYFLIV +FI++++ Sbjct: 301 VARRGMAKRMNLMRDLQSAGRLRHTFAEYEERLNFEIDTIKKMQFPGYFLIVWDFIRYAR 360 Query: 353 DNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRD 412 +N +PVGPGRGS AGSLVAYA+ ITD+DPL+ +LLF+RFLNPER+SMPD DVDFCM +R Sbjct: 361 ENNIPVGPGRGSAAGSLVAYAMTITDVDPLQNNLLFQRFLNPERISMPDIDVDFCMNRRG 420 Query: 413 QVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA 472 +VI++V + YGRD V+QIITFGTMAAKA I+D GR + PY VDR++K++P +T+ Sbjct: 421 EVIKYVTEKYGRDQVAQIITFGTMAAKAAIKDCGRAMDIPYAEVDRVAKMVPTTINITID 480 Query: 473 KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDE 532 A + P L YE++ +VK LID A++LEG+ RN+G HA VVIAP +TD PL+ Sbjct: 481 GALKDSPMLATAYESEPQVKELIDTAKRLEGLVRNSGVHASAVVIAPQPLTDLVPLHK-T 539 Query: 533 EGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLD 592 + VT +D VE GL+K DFLGL TLTI++ AL++I++ + +++ +P D Sbjct: 540 KNDEIVTAYDMKAVEKMGLLKMDFLGLTTLTILDDALKLIDQTQGV----KIELEKLPFD 595 Query: 593 DKKSFD-MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNF 651 DK++++ + T+ VFQ ES GM+D++++ +PD ED+ AL AL+RPGP+Q GM+D+F Sbjct: 596 DKQTYERIFHSGYTSGVFQFESSGMRDVLRKYKPDTVEDLTALNALYRPGPIQGGMIDDF 655 Query: 652 IDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRA 711 I+RK GR ++ Y H+ LK +L T G+I+YQEQVMQIA L+GY+LG AD+LRRA Sbjct: 656 INRKWGRAKVDY-----FHDDLKTILVETLGVIVYQEQVMQIANKLAGYSLGDADLLRRA 710 Query: 712 MGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQT 771 MGKK +EM KQR F +GA G + +L + IFDL+E+FAGYGFNKSHSAAYAL++Y T Sbjct: 711 MGKKDAKEMEKQRDRFTKGAIDRGYDKQLTVHIFDLMEQFAGYGFNKSHSAAYALLAYHT 770 Query: 772 LWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEI 831 +LK H+P EFMAA++T+ +T+ VV ++EC MG+++ PPD+N L F D G I Sbjct: 771 AYLKTHFPIEFMAALLTSVSGSTDDVVKYINECRDMGIEVRPPDVNVSLASFTP-DQGAI 829 Query: 832 VYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRL 891 +G+ AIK +G IE+I+ AR G F F+ C + D + LN+RV+E LI SGA D L Sbjct: 830 RFGLSAIKNLGHNAIESIVTARQAIGKFSSFFEFCEKVDLRLLNKRVVESLIKSGAMDPL 889 Query: 892 GPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQ--SYASCQPWPEQVV 949 G R+ L + A++AA + + GQ +FGV EEP ++ S + W E Sbjct: 890 G-RRSQLFAVIDKAMEAAQKTQRDAESGQHGLFGVFDEEPVAGKKVDSLPNVPDWDEHQR 948 Query: 950 LDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTER----GKVITAAGLVVAARV 1005 L E+E LG ++TGHP+ +Y ++ + + +D+ G+ G++ +V Sbjct: 949 LANEKEILGFFITGHPMEKYKDKLADFR-AMSTEDLKNMRTSTAKGEEYYVGGVMSGVKV 1007 Query: 1006 MVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKM 1065 +K+G+ + TL+D G + + F + + L+ + ++V G + ++ + K+ Sbjct: 1008 AKSKKGDMYALGTLEDIHGAVSFLCFNENYKRLVDKLKLEVPVLVKGAIRIEEDNP-PKI 1066 Query: 1066 TAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADAR 1125 +++ +D A K + + + + + L+ L GT V + Sbjct: 1067 MVSDIIPLDTAVPKLPQKVRVRVPLNSSTEGTLDALHGIFGE-CKGTAKVLFDLEMPGDF 1125 Query: 1126 ARLRFGATWRVSPSDRLLNDLRGLIGSEQVE 1156 + ++ V + + L G V Sbjct: 1126 LVVMEAESYNVQADRAFVARVEELCGRGAVR 1156 >UniRef50_Q2S3X0 DNA polymerase III, alpha subunit n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S3X0_SALRD Length = 1166 Score = 1302 bits (3369), Expect = 0.0, Method: Composition-based stats. Identities = 435/1189 (36%), Positives = 665/1189 (55%), Gaps = 56/1189 (4%) Query: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 P F HL H+ YS++DG A L++ A +PA+AITD NL G+ +FY + ++ Sbjct: 2 PNFSHLHCHTQYSLLDGAAGIDHLIESAERRDIPAVAITDHGNLYGVPEFYTTAQKSDVQ 61 Query: 64 PIVGADFNVQCDLLGDE----LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRD 119 PI+G +F + + D+ H +LA N TGY+NL L S ++ G+ P ID D Sbjct: 62 PIIGCEFYLTPSGIQDQSDPTRYHQVLLAKNQTGYENLMQLSSTSFLEGF-YYKPRIDLD 120 Query: 120 WLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEE 179 L + +EGL+ + G V + +L E Y + F D Y++E+ D+ Sbjct: 121 LLRKHHEGLVATTCCLQGQVPQMILNQGEEAAQEKFEEYLDIFGDDYYIEIQDHDIDDQH 180 Query: 180 SYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQY 239 + ++ A A + V+ATNDV ++D D +A +I + + G +DP R R + Q Y Sbjct: 181 TVNEVLLQWARAYDVEVLATNDVHYVDQQDHEAQDILLCLQTGDDYNDPDRMRFSNDQFY 240 Query: 240 MRSEEEMCELFADIPE-----ALANTVEIAKRCNVTVRLGEYFLPQFPTGDM--STEDYL 292 ++ M E IPE AL NT ++A +C+ + +G+ +P +P + + YL Sbjct: 241 LKDSAGMMEALTGIPEEFQREALVNTNKVADKCSFDLPMGDLLMPHYPIPEGFEDMDGYL 300 Query: 293 VKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSK 352 E +ER P +RL EL +I G+ GYFLIV +F ++ Sbjct: 301 RHLTFERAKERYGDPLPQT---------VVDRLNHELGIIADEGYSGYFLIVQDFTDAAR 351 Query: 353 DNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRD 412 + V VGPGRGS AGS V+Y L IT++DPLE+DLLFERFLNPERVSMPD D+DF R+ Sbjct: 352 ELDVRVGPGRGSAAGSCVSYCLGITNVDPLEYDLLFERFLNPERVSMPDIDIDFDDRGRE 411 Query: 413 QVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA 472 +VI++V + YG++ V QI+TFGTM AK +RDV RVL P D I+K+IP PG+ L Sbjct: 412 KVIDYVVEKYGQENVCQIVTFGTMGAKTAVRDVSRVLDIPLDRADEIAKMIPDGPGVDLE 471 Query: 473 KAFEAEPQLPEIYE-ADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLY-- 529 +AF+ P + + + EV ++ A LEG R+ G HA GV+IAP +I+D+ P+ Sbjct: 472 QAFDENPDFRALKDANNPEVSKMMQYAEVLEGSVRHTGVHAAGVIIAPGEISDYVPVSVA 531 Query: 530 CDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAI 589 + + TQ+D VE GL+K DFLGL+TLT+I A+E++ R + L+I I Sbjct: 532 KSKGEEVVTTQYDGDWVEEFGLLKMDFLGLKTLTLIEDAVELVEDTR----DVDLNIDDI 587 Query: 590 PLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVD 649 PLDD+ +F++ QR +T ++FQ ES GM++ +++L+P D+IA+ AL+RPGP++ + Sbjct: 588 PLDDEATFELFQRGDTVSIFQFESTGMREHLRKLKPTEIGDLIAMNALYRPGPME--NIP 645 Query: 650 NFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLR 709 ++ RKHG+EE+ YP H L+ +LEPTYGI ++QEQVMQ+A+ L+G++LG AD+LR Sbjct: 646 TYVARKHGQEEVEYP-----HPLLEDILEPTYGIAVFQEQVMQMARELAGFSLGEADILR 700 Query: 710 RAMGKKKPEEMAKQRSVFAEGA-EKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVS 768 RAMGKKK + M KQR F +G +N I + A ++FD++ +FAGYGFNKSHSAAY+LV+ Sbjct: 701 RAMGKKKEKLMRKQREKFIKGCQAENDIPEDEADELFDIINEFAGYGFNKSHSAAYSLVA 760 Query: 769 YQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDD 828 Y+T +LKAHYP EFMAA MT +MDNT+K+ +++E MGL++LPP IN F V Sbjct: 761 YRTAYLKAHYPPEFMAAAMTNEMDNTDKLSKVLEEARSMGLEVLPPSINRSQSRFTVEQG 820 Query: 829 GE----IVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884 + + +G+ AIK GE I A+I+AR + G F +FDL D +N+R LE L Sbjct: 821 PDGAYRVRFGLAAIKNAGEKAINALIDAREEHGPFDSIFDLTKNVDLGTVNKRTLEALAQ 880 Query: 885 SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944 +GA D L HRA LM + A++ + GQ +FG E ++ + W Sbjct: 881 AGALDDLEGHRAQLMEIMDKAVRYGQKVQHDRMAGQNSLFGNGDAGTEAMQPGLPDVETW 940 Query: 945 PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGV------------RLKDMHPTERGK 992 + L E E LG Y++GHP+++Y E + + + RG Sbjct: 941 AKSQRLKEEHEVLGFYVSGHPLDEYRAEADAFATAHFGEPDQLEQVIEQAAGGDGRNRGP 1000 Query: 993 VITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSG 1052 V T G++ TK G I T++D +G+ E+++F+ LD+ Q LE D +++ G Sbjct: 1001 VRTFCGIITEVDRNTTKSGKPIAFATIEDFTGQGEMVIFSSILDRVQPYLEVDNVVLAKG 1060 Query: 1053 QVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGT 1112 V G +K+ A+++ + + RE+ + +++ Q+ L RQ E G Sbjct: 1061 NVEV--RGGTVKVLAKDLTPMWKVREQMVSEVILTVDLDQVMPDELQTFRQLCER-TEGN 1117 Query: 1113 IPVHLYYQRADARARLRF-GATWRVSPSDRLLNDLRGLIGSEQVELEFD 1160 ++ + R + R + V P+ + + + G + + L+ + Sbjct: 1118 CTLYFDVDAPELRGQERLRSRAYVVEPTAEFMRGAQRIFGPDNIALKGN 1166 >UniRef50_D1BNX7 DNA polymerase III, alpha subunit n=3 Tax=Veillonella RepID=D1BNX7_VEIPT Length = 1135 Score = 1300 bits (3364), Expect = 0.0, Method: Composition-based stats. Identities = 470/1165 (40%), Positives = 687/1165 (58%), Gaps = 41/1165 (3%) Query: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 FVHL H+++S++DG+++ +V++A L PALAITD N+ + FY G+K Sbjct: 2 QPFVHLHSHTEFSLLDGISRLPDMVRRAKELNQPALAITDHGNMYAAIYFYKECMAQGVK 61 Query: 64 PIVGADFNVQCDLLGDEL--------THLTVLAANNTGYQNLTLLISKAYQRGYGAAGPI 115 PI+G + V + D HL +LA GY+NL ++SKA G P Sbjct: 62 PIIGCEVYVTENNRFDRPEGRSRERLKHLILLAETMEGYRNLVKIVSKASTEGMLYR-PR 120 Query: 116 IDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRTG 174 DRD L + ++G+I LS G++ + +L+ N + +Y E + D +FLE+ G Sbjct: 121 ADRDLLRQYSKGIIALSACIQGEIPQYILQDNMEGAKRSIEWYIETYGKDNFFLEIQNHG 180 Query: 175 RPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNY 234 P+E ++L++ GL +VA+ND ++ D DA +I+V I G + R + Sbjct: 181 LPEEAKAQEELIKLSKEYGLGIVASNDFHYVLKEDADAQDIKVCISTGRRRAEVDRLKFP 240 Query: 235 SPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLV 293 + + Y++S +EM ELF IP A+ NT++IA+RCNV E+ LP F + +++ YL Sbjct: 241 NDEFYLKSGDEMAELFGHIPGAIENTLKIAERCNVEFNFDEHHLPHFDVPEGETSKTYLR 300 Query: 294 KRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKD 353 K + + E +RL+ EL VI MGF YFLIV ++++++++ Sbjct: 301 KVCEREIPRLYGE----------TSEELQKRLDYELDVIGTMGFEDYFLIVWDYVRYARE 350 Query: 354 NGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQ 413 + + VGPGRGS AGS+VAY L IT LDPL++DLLFERFLNPERVSMPD D+DFC EKR Q Sbjct: 351 HDILVGPGRGSAAGSVVAYLLGITGLDPLKYDLLFERFLNPERVSMPDIDIDFCYEKRGQ 410 Query: 414 VIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAK 473 IE+V YG+ VSQIITFGT AA+AVIRDVGRVL P V+RI+K+IP + G+TL K Sbjct: 411 AIEYVTRKYGQARVSQIITFGTEAARAVIRDVGRVLDLPLAEVNRIAKMIPNELGITLDK 470 Query: 474 AFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEE 533 A + +L +YEAD VK L D +KLEG+ RN+ HA GVVI+ + D P+ + Sbjct: 471 ALQG-KELKALYEADPNVKELFDFGKKLEGIARNSSTHAAGVVISADPLDDHVPVQNAND 529 Query: 534 GKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDD 593 VTQ+DK ++E GL+K DFLGLRTLT++ AL++I R + LD+ AIPLDD Sbjct: 530 EGF-VTQYDKDNIEELGLLKMDFLGLRTLTVMGDALKLIKANRGID----LDLDAIPLDD 584 Query: 594 KKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFID 653 K + D+L + +T+ VFQLES G+ L+ L+P+ FED+I LVAL+RPGPL SGMV +FID Sbjct: 585 KAACDLLTKGDTSGVFQLESEGITKLVMDLKPEHFEDLIPLVALYRPGPLGSGMVADFID 644 Query: 654 RKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMG 713 R+HG++E++Y H L+P+L+ T+G+ILYQEQVMQIA + G++LG AD++RRAMG Sbjct: 645 RRHGKKEVTY-----LHPILEPILKDTFGVILYQEQVMQIASAMGGFSLGQADLMRRAMG 699 Query: 714 KKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLW 773 KKK + QR F +G+ KNGI+ +A ++FDL+ FAGYGFNKSHSAAYA ++YQT + Sbjct: 700 KKKESVLKAQRESFIQGSVKNGIDESVANEVFDLLVYFAGYGFNKSHSAAYAYIAYQTAY 759 Query: 774 LKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVY 833 LKAHY EFMAA MT+ M N +K+ ++ C + +K+L PDIN F V DD I + Sbjct: 760 LKAHYFPEFMAATMTSFMQNMQKLTYYINSCKKHNVKVLGPDINYSERSFAVQDD-AIRF 818 Query: 834 GIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGP 893 G+G IK VG+ I+ +I RN+ G + ++ D C R D K +N+R+LE LI G+ D Sbjct: 819 GLGGIKNVGDNAIDRLIRERNEHGLYTDIVDFCKRVDNKVVNKRLLESLIRCGSMDGFKE 878 Query: 894 HRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGE 953 +R L++ A + K A+G ++FG + E + I + + E L E Sbjct: 879 NRNQLLHMYESAQAVGAKEQKDAAMGTMNLFGDMEEAVDFIP--VPNVEDLSEDDKLKDE 936 Query: 954 RETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNR 1013 +E G Y+TGHP+ Y KE+E L + G+ IT GL+ +TKR Sbjct: 937 KEYTGFYITGHPLQGYAKELEGLFELGALAENPEQYDGQTITFGGLIENKSDRMTKRNEV 996 Query: 1014 IGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDI 1073 + I ++D SG V+ F + QQ L D I+ V G+V D+ G+++ A + + Sbjct: 997 MSILRIEDYSGAANVVAFPKVFSQSQQFLAVDMIVKVKGRVDADEK--GVQIIADRITPL 1054 Query: 1074 DEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGAT 1133 + A+ +AI + + + L++ L +G++P LY R R R+ Sbjct: 1055 -KVNYSQAKQVAIHIYSQYDTPENSEVLKRVLTS-TAGSVPTSLYLHR--QRKRINLPPN 1110 Query: 1134 WRVSPSDRLLNDLRGLIGSEQVELE 1158 PSD + + ++G VE++ Sbjct: 1111 MCFDPSDESIKAIEAILGEGSVEVQ 1135 >UniRef50_C0QG07 DnaE n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QG07_DESAH Length = 1184 Score = 1299 bits (3363), Expect = 0.0, Method: Composition-based stats. Identities = 466/1178 (39%), Positives = 691/1178 (58%), Gaps = 41/1178 (3%) Query: 1 MSEP-RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59 M P F HL VH+++S++DG + L+K+ M +AITD + G F Sbjct: 2 MDTPSPFCHLHVHTEFSLLDGAIRLDALLKRCKEFNMDTVAITDHGTMFGTAPFNEKARK 61 Query: 60 AGIKPIVGADFNVQCDLLGDEL-------THLTVLAANNTGYQNLTLLISKAYQRGYGAA 112 GI+PI+G + V + ++ HL +LA + GY NL L+S A G+ Sbjct: 62 VGIQPILGCEVYVAPRSIRNKTAEDNKGLNHLVLLAKDREGYGNLCKLVSIAQFEGF-YY 120 Query: 113 GPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELI 171 P IDR+ L + ++GLI LS GD+ + ++ L + +Y + F D +FLE+ Sbjct: 121 KPRIDRELLTKYSKGLIALSACLKGDIPQKIIHNQMDLAFDSARYYLDTFGEDNFFLEIQ 180 Query: 172 RTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRP 231 + G +E E+++ +P+VATND ++ AHE + I G TL+D R Sbjct: 181 KNGMEIQEKVNQGLWEVSKKLSIPMVATNDCHYLSRDHVRAHEALLCIQTGNTLNDANRF 240 Query: 232 RNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM----- 286 + S + Y +S +EM F P A+ NT+ IAKRCNV Y P++ + Sbjct: 241 KFDSDELYFKSADEMIADFKTYPGAIENTLLIAKRCNVEFGEKVYHFPRYTSAQGEKSGE 300 Query: 287 ----STEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFL 342 + + ++A+EG E RL L + Y ERL E+ VI MGFPGYFL Sbjct: 301 DCVQTAGEIFKRQAQEGFERRLKML--KRKNPNLDEALYRERLAYEIGVILDMGFPGYFL 358 Query: 343 IVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDF 402 IV +FI++S+++ +PVGPGRGS AGS+VAYA++IT LDP+ L+FERFLNP R+SMPD Sbjct: 359 IVADFIRYSREHNIPVGPGRGSAAGSMVAYAMEITALDPIAHGLIFERFLNPSRISMPDI 418 Query: 403 DVDFCMEKRDQVIEHVADMYG-RDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISK 461 DVDFC+E RD+V ++V D YG D VSQIITFG + AKAV+RDVGR L P VD ++K Sbjct: 419 DVDFCIEGRDEVYKYVIDRYGGADYVSQIITFGKLKAKAVVRDVGRALSVPLPEVDVLAK 478 Query: 462 LIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTK 521 LIP D L +A + P++ E+ D K LID+A LEG+ R A HA GVVI+ Sbjct: 479 LIP-DNAKNLGQALKDVPRIMELVNQDPVKKELIDIALLLEGLPRQASTHACGVVISDKP 537 Query: 522 ITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGE 581 + ++ P Y +EG+ VTQFD + VE GLVKFDFLGLR LT+I L+++ K+ + Sbjct: 538 LVEYLPTYKGKEGE-VVTQFDMNFVEKLGLVKFDFLGLRNLTVIKNTLDLLKKQSKEVP- 595 Query: 582 PPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPG 641 D+ I +DD ++++L R++TT VFQLES GMK+LI RLQP CF D++ALVAL+RPG Sbjct: 596 ---DLLEIDMDDPPTYELLARADTTGVFQLESSGMKELITRLQPACFSDIVALVALYRPG 652 Query: 642 PLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYT 701 PL SGM D++++RKHGRE++ Y L+P+L+ TYG+ILYQEQVM+IA VL+ Y+ Sbjct: 653 PLDSGMADSYVERKHGREDVVY-----LFPQLEPILKETYGVILYQEQVMKIAGVLANYS 707 Query: 702 LGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHS 761 + AD LR+AMGKK P M + R +F +GA++N ++ A ++FDL+EKF GYGFNKSHS Sbjct: 708 MADADGLRKAMGKKIPAMMEEHRGLFLKGAKENNLDGAKAAELFDLMEKFGGYGFNKSHS 767 Query: 762 AAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLY 821 AAYAL+ +QT +LKAHYP E+MAA+MT+DM N + VV +DEC + +LPPD+N Sbjct: 768 AAYALICFQTAYLKAHYPLEYMAALMTSDMSNIDSVVKFIDECRNHEINVLPPDVNESES 827 Query: 822 HFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEK 881 F V I +G+ A+KG+G I++I+E R++ G F ++D C R + K+N+RVLE Sbjct: 828 VFTVAP-AAIRFGLAAVKGIGSAAIDSIVEIRSQEGPFTSIYDFCERVNLTKVNKRVLEA 886 Query: 882 LIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLA--EEPEQIEQSYA 939 LI GAFD G R+ +M L DAL ++ + +A Q D+F E S Sbjct: 887 LIKCGAFDSTGSKRSQMMAVLEDALDHGNRIQREKADAQMDLFADTEGGEALPLSVPSMP 946 Query: 940 SCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGL 999 + +L E+ETLG Y+TGHP+++Y + I+++ + + T G+ + G Sbjct: 947 DIPELDDNDLLAMEKETLGFYITGHPLDRYEEMIKKFANVNS-ETLVETPEGQSVRMGGA 1005 Query: 1000 VVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDF 1059 + +++ TK+G+ + L+D+ G +EV++F + + LL D +I+ +V + Sbjct: 1006 LRPLKILKTKKGDMMAFAALEDKKGSVEVVIFPELYQEVHYLLNDDTPVILQAEVQKRES 1065 Query: 1060 SGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYY 1119 + +K+ A +++ ID+A ++ + I++ + D +L RL+ L +GT V L Sbjct: 1066 N--VKLLAEQIVPIDKAEAEWTASIVITMAAKGADISVLERLKGLLHRF-AGTCSVFLEI 1122 Query: 1120 QRADA-RARLRFGATWRVSPSDRLLNDLRGLIGSEQVE 1156 D ++ VSP L ++ L+G +E Sbjct: 1123 TVEDGSSVVIQLSQDELVSPDPLLFQEVEALLGKNTIE 1160 >UniRef50_C9XRY5 DNA polymerase III alpha subunit n=38 Tax=Clostridia RepID=C9XRY5_CLODC Length = 1189 Score = 1296 bits (3354), Expect = 0.0, Method: Composition-based stats. Identities = 455/1212 (37%), Positives = 679/1212 (56%), Gaps = 81/1212 (6%) Query: 3 EPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGI 62 F HL VH++YS++DG ++ L+K+A L M ++AITD + G++ FY GI Sbjct: 2 NKDFAHLHVHTEYSLLDGFSRVKKLIKRAKELNMSSIAITDHGCMFGVIDFYKTAIKEGI 61 Query: 63 KPIVGADFNVQCDLLGDELT-------HLTVLAANNTGYQNLTLLISKAYQRGYGAAGPI 115 KPI+G + L D+ HL +LA N GY+NL ++S +Y G+ P Sbjct: 62 KPIIGCEVYTAARGLRDKDPNYDKYQGHLVLLAKNMEGYKNLIKIVSTSYVEGF-YYKPR 120 Query: 116 IDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPD-RYFLELIRTG 174 +D + L + N+G+I LS GDV R+L+ N + Y + F + +FLE+ Sbjct: 121 VDMEELKKHNKGIIALSACLAGDVARALMNRNYEKAKQFALDYRDIFGEENFFLEIQDHN 180 Query: 175 RPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNY 234 P+++ V+L++ G+P+VATNDV +++ D H++ + I G TL+DP R R Sbjct: 181 LPEQKEVNSGLVKLSKETGIPLVATNDVHYVNKEDSKIHDVLMCIQMGKTLNDPNRMRFG 240 Query: 235 SPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTED-YLV 293 S + Y++S EEM ELF EA+ NTV+IA CNV LP++ + T + YL Sbjct: 241 SDEFYLKSREEMEELFPYALEAIDNTVKIADMCNVEFDFNTIHLPKYDVPEGYTPETYLR 300 Query: 294 KRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKD 353 + GL+ER E ERL EL VI +MG+ YFLIV +FI +SK+ Sbjct: 301 ELCFNGLKERYDNP----------SNEILERLNYELDVIEKMGYVEYFLIVWDFINFSKE 350 Query: 354 NGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQ 413 N + VGPGRGS AGS+VAY LKITD+DP+++ LLFERFLNPER+SMPD D+DFC E+R++ Sbjct: 351 NNIIVGPGRGSAAGSIVAYTLKITDIDPIKYSLLFERFLNPERISMPDIDIDFCYERREE 410 Query: 414 VIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAK 473 VI++V YG D V+QIITFGTM AKA IRDVGRVL Y VD+++K IP GMT+ K Sbjct: 411 VIDYVKRKYGDDHVAQIITFGTMGAKAAIRDVGRVLDIGYNKVDKVAKEIPFALGMTIDK 470 Query: 474 AFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEE 533 A + P L E+Y+ D E K +I++++++EG+ R+A HA GVVI+ + ++ PLY ++ Sbjct: 471 ALDTNPNLKELYDQDPETKEIINISKQIEGMLRHASTHAAGVVISKNPVDEYVPLYKHQD 530 Query: 534 GKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRA-KNGEPPLDIAAIPLD 592 TQF + +E GL+K DFLGLRTLT+I L++I K R KN +D + + D Sbjct: 531 A--ITTQFTMTTLEELGLLKMDFLGLRTLTVIRDTLDLIEKNRVIKNYTEKIDFSKMDYD 588 Query: 593 DKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFI 652 D K ++ML T VFQLES GM+ +K+L+PD FED++A ++LFRPGP+ S + +I Sbjct: 589 DPKVYEMLSSGNTLGVFQLESAGMRSFMKQLKPDNFEDIVAGISLFRPGPMDS--IPAYI 646 Query: 653 DRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAM 712 K ++++Y HE LKP++E TYG ++YQEQVMQ+ + L GY+ G +D++RRAM Sbjct: 647 KNKSNPKDVTY-----LHEKLKPIMEVTYGCLVYQEQVMQVVRDLGGYSYGRSDLVRRAM 701 Query: 713 GKKKPEEMAKQRSVFAE------------GAEKNGINAELAMKIFDLVEKFAGYGFNKSH 760 KKK + M ++R F G +NG+ E+A KIFD + FA Y FNKSH Sbjct: 702 SKKKMDVMEEERQYFIHGKFDEDGNIEIAGCIRNGVEEEIANKIFDDMIDFARYAFNKSH 761 Query: 761 SAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGL 820 +AAY +++Y+T +LK +YP EFMAA++T+ M NT+KVV + EC + + +LPPDIN Sbjct: 762 AAAYGVLAYETAYLKTYYPVEFMAALITSVMGNTDKVVEYIRECKALEIDVLPPDINKSF 821 Query: 821 YHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLE 880 F V D I +G+ A+K VG I II R G F +L DL R D K N+RV+E Sbjct: 822 SKFSVEGDN-IRFGLAAVKNVGVNIINNIIAERESNGLFVDLVDLVKRLDQKDTNKRVIE 880 Query: 881 KLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQ---- 936 LI GAFD + +RA+LM L++ K GQ +F + E + Sbjct: 881 SLIKCGAFDNISENRASLMAGYESLLESVSMDRKKNVQGQISLFDAFGDSEEDSDFQQIY 940 Query: 937 SYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGV--RLKDMHPTE----- 989 S Q + E+ L+ E+E LG+Y++GHP++Q+ KE++ +L + E Sbjct: 941 SLPKRQEYEERERLNLEKEVLGMYVSGHPLSQFEKELQEKTSMDNGKLNSLKEEEESYLQ 1000 Query: 990 -RGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRIL 1048 + G++V + TKR + L+D G +E+++F L KY +L +D I+ Sbjct: 1001 MNETDVIMGGMIVTKTIKTTKRNEIMAFIELEDLYGAIEIIVFPQLLQKYNVILNEDNII 1060 Query: 1049 IVSGQVSFDDFSGGLKMTAREVMDI-------------------DEAREKYARGLAISLT 1089 V G +S + K+ ARE+ DI + + + + L + + Sbjct: 1061 YVKGTLSIKE-GENAKLIAREIKDINDDTDFADRNYNSGRTRNVENIKPESGKKLYLKID 1119 Query: 1090 DRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRAD---ARARLRFGATWRVSPSDRLLNDL 1146 D N + + G ++LY + R + D +N+L Sbjct: 1120 SMSDTDTTNNIV--EIAKQYPGNDSIYLYPMDENINGKRKAYKMTGALT-CICDEFINNL 1176 Query: 1147 RGLIGSEQVELE 1158 L+ + ++++ Sbjct: 1177 EELLPKDNIKVK 1188 >UniRef50_B5EQR5 DNA polymerase III, alpha subunit n=4 Tax=Bacteria RepID=B5EQR5_ACIF5 Length = 1167 Score = 1295 bits (3352), Expect = 0.0, Method: Composition-based stats. Identities = 581/1125 (51%), Positives = 764/1125 (67%), Gaps = 22/1125 (1%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M P+FVHL VHS+YS+ DG+ L ++ A GMPA+AITD NL LVKFY A G Sbjct: 2 MRTPQFVHLHVHSEYSLEDGIIPVKALARRCAERGMPAVAITDHGNLFALVKFYNAARGQ 61 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 G+KP++G++ V + L +L + TGY+NL+ L+S+AY G P ID W Sbjct: 62 GVKPLIGSEVWVHDVAEPERPVSLVLLCMDKTGYRNLSRLLSRAYLEGSRHGRPQIDVAW 121 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 180 L ++GLI LS G++GR+L + + + +Y FP+R++LE+ R G ++E+ Sbjct: 122 LEGSSDGLIALSAAGQGEIGRAL-QRHPQQAESRARYYARLFPERFYLEVQRNGEAEQEA 180 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 + A V LAE LP+VATN+ F+D++DF A + R I GFTLDDP+RPR ++P+ + Sbjct: 181 LVQATVALAEKLDLPLVATNNAHFLDAADFAAFDARQCISAGFTLDDPRRPRRFTPEHRL 240 Query: 241 RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTG-DMSTEDYLVKRAKEG 299 EEM E FAD+PEA NTVEIA+RCN+ + LG Y LP +P + S ++YL A++G Sbjct: 241 PDPEEMRERFADLPEACDNTVEIARRCNMELVLGHYALPDYPIPANQSVDEYLHDAAQKG 300 Query: 300 LEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVG 359 L+ERL L + L Y ERL E+ VI QMGFPGYFLIV +FIQW+K+NGVPVG Sbjct: 301 LQERLQELRITGDATLP----YHERLLREVGVIQQMGFPGYFLIVADFIQWAKNNGVPVG 356 Query: 360 PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVA 419 PGRGSGAGSLVAYAL+ITDLDP+ LLFERFLNPERVSMPDFDVDFCM++RD+VI++VA Sbjct: 357 PGRGSGAGSLVAYALRITDLDPIGNGLLFERFLNPERVSMPDFDVDFCMDQRDRVIQYVA 416 Query: 420 DMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEP 479 D YGRD V QIITFGTM A+AV+RDVGRVLG PYGFVD+++KL+P D GMTLAKA E Sbjct: 417 DKYGRDRVGQIITFGTMKARAVVRDVGRVLGLPYGFVDQLAKLVPGDLGMTLAKALEESE 476 Query: 480 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCD-EEGKHPV 538 +L +++V+ L+D+A +LEG+ R+A HAGGVVI+P + D PL+ D EG V Sbjct: 477 ELRRRQAEEDDVRDLLDIALRLEGLPRHASTHAGGVVISPEPLADRLPLFNDGSEGGGNV 536 Query: 539 TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598 TQ DK DVE GLVKFDFLGLRTLTII+ A+++IN A G P+DI +PLDD +F Sbjct: 537 TQLDKDDVEKMGLVKFDFLGLRTLTIIDMAVKLINADAAAAGRAPVDIQQLPLDDAATFA 596 Query: 599 MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658 +L+ +ET AVFQLES GM+DL++RLQPD FED++ALVALFRPGPLQSGMVD+FI RKHG+ Sbjct: 597 LLKSTETAAVFQLESSGMRDLVRRLQPDTFEDIVALVALFRPGPLQSGMVDDFIARKHGK 656 Query: 659 EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718 +++Y H L P+L TYG+I+YQEQVMQ AQ L+GY+LGGAD+LRRAMGKKKPE Sbjct: 657 AQVTY-----LHPDLAPILRETYGVIVYQEQVMQSAQALAGYSLGGADLLRRAMGKKKPE 711 Query: 719 EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778 EMAKQRS+F EGA KNG+ A+ A IFDL+EKFA YGFNKSHSAAYALVSYQT +LKAHY Sbjct: 712 EMAKQRSIFLEGAHKNGLAADQAGAIFDLMEKFAEYGFNKSHSAAYALVSYQTAYLKAHY 771 Query: 779 PAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAI 838 P FM+AV+TADMD+T+KVV ++ EC RMGL+I PP + + F D I +G+GAI Sbjct: 772 PQFFMSAVLTADMDHTDKVVAMIAECARMGLRIAPPSVQHSVLEFRPEGDDHIRFGLGAI 831 Query: 839 KGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAAL 898 KG+G I+AI++AR +GG F LFDL R DT+K+NRR LE LI +GA D G RA+L Sbjct: 832 KGLGRAAIQAILDAR-RGGAFLNLFDLLCRVDTQKINRRALEALIRAGAMDDWGVSRASL 890 Query: 899 MNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLG 958 + S+ ++AA Q ++A Q +F +E ++ S + W L ERETLG Sbjct: 891 IASVDGCMEAAAQFQSSQASLQESLFS--GQEALRVAPPLVSAEAWSLTETLRQERETLG 948 Query: 959 LYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICT 1018 YL+GHP++ ++ + G + AGLVVA R TKRG+RI T Sbjct: 949 FYLSGHPMDSLRDDLTALGTI----PLGDVAVGSTVLVAGLVVARRSTRTKRGDRIYFLT 1004 Query: 1019 LDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEARE 1078 LDD GRLEV++F + + ++ E + ++V G+V D +SGGL+++A ++D +ARE Sbjct: 1005 LDDGQGRLEVVVFGEVWARAGKIREGEEPVLVLGEVGEDSYSGGLRLSALRLLDTAQARE 1064 Query: 1079 KYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRAD 1123 + A ++L +D L L + G + L + AD Sbjct: 1065 ELAA--QLTLDLGLAEDMAPRDLLAVLRKY-PGQTALRLRLRVAD 1106 >UniRef50_Q1MRR3 DNA polymerase III, alpha subunit n=3 Tax=Desulfovibrionaceae RepID=Q1MRR3_LAWIP Length = 1169 Score = 1290 bits (3339), Expect = 0.0, Method: Composition-based stats. Identities = 466/1180 (39%), Positives = 682/1180 (57%), Gaps = 53/1180 (4%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS FVHL HS+YS++DG + L + GMPA A+TD NL FY Sbjct: 1 MSN--FVHLHCHSEYSLLDGAIRLDALCARTKEFGMPAAAVTDHGNLFAATHFYSICKEY 58 Query: 61 GIKPIVGADFNVQCDL------LGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGP 114 GIKPI+G + V D HL +LA N GY NL L+++ Y G+ P Sbjct: 59 GIKPIIGCEVYVTKDHADKLSKFSKARHHLILLARNKEGYHNLVKLVTRGYLDGFHY-KP 117 Query: 115 IIDRDWLIELNEGLILLSGGRMGDVGRSLLRGN--------SALVDECVAFYEEHFPDRY 166 +D+ L + + G+ LS G++ R+++ N Y +P ++ Sbjct: 118 RVDKTLLKQFSSGITALSACLAGELPRTIMGKNIFVEKGGTFDDAISIAQEYASIYPGQF 177 Query: 167 FLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLD 226 +LE+ P+++ ELAE LP+VATND ++++ D +AH+I + + + Sbjct: 178 YLEVQANMLPEQQKVNEKLYELAEYTNLPLVATNDCHYLNADDVEAHDILLCVQTQAKFN 237 Query: 227 DPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM 286 D R R + Y +S EEM + F+ +P A+ NT++IA+ C+V + + P + Sbjct: 238 DTDRMRFNATDLYYKSSEEMEKAFSHLPIAIENTIKIAESCSVEMDFSKNLFPVYELPKG 297 Query: 287 -STEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVM 345 + +D + A+EGL++RL ++ Y +RLE EL +I +MGFPGYFLIV Sbjct: 298 VTPDDEFRRLAREGLQKRLE---VYPNKKQLTTENYWKRLEQELDIICKMGFPGYFLIVQ 354 Query: 346 EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405 +FI W+KDN +PVGPGRGS GSLVA+AL+IT++DPL ++LLFERFLN ER+S+PD DVD Sbjct: 355 DFINWAKDNNIPVGPGRGSATGSLVAWALRITNIDPLPYNLLFERFLNIERISLPDIDVD 414 Query: 406 FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465 FC +KR VI +V + YG ++V+QI TFG M AKAV+RD+GRVL + D I+KLIP Sbjct: 415 FCEDKRGDVIRYVMNKYGVNSVAQITTFGKMKAKAVVRDIGRVLDMSFKETDNIAKLIPD 474 Query: 466 DPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDF 525 D MT+ KA E EP+L +Y + +K L+D++ KLEG+ R+A HA GVV++ + ++ Sbjct: 475 DLHMTILKAMEVEPKLQALYNEEPHIKRLLDISMKLEGLVRHASTHAAGVVVSDKPMDEY 534 Query: 526 APLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLD 585 PLY ++G+ VTQFD VE GLVKFDFLGLRT+T+I+ L+ I + P + Sbjct: 535 LPLYRGKKGE-LVTQFDMKMVEKVGLVKFDFLGLRTMTLIHTTLKTIKDQGKI----PPN 589 Query: 586 IAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQS 645 + +PLDD K++++L + +T VFQ+ES GM+ ++ L+P+CFED+IA++AL+RPGPL S Sbjct: 590 LDTLPLDDPKTYELLSKGDTDGVFQVESSGMRQYLRMLKPNCFEDLIAMLALYRPGPLGS 649 Query: 646 GMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGA 705 GMVD FI RKHG I YP SLK L+ TYG+I+YQEQVMQIAQ+++GY+LG A Sbjct: 650 GMVDEFIKRKHGTVTIEYPL-----PSLKDCLKDTYGVIVYQEQVMQIAQIVAGYSLGEA 704 Query: 706 DMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYA 765 D+LRRAMGKK PE MAK+R+ F EGA KN + +A IFDL+EKFA YGFNKSHSAAYA Sbjct: 705 DLLRRAMGKKNPEAMAKERTRFVEGAIKNNVTESIASDIFDLMEKFAEYGFNKSHSAAYA 764 Query: 766 LVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHV 825 L+SY T +LKAH+ EFMAA++T++ N K++ C MG+ IL PDI + F + Sbjct: 765 LISYHTAYLKAHFTLEFMAALLTSESGNQNKILKYTAACKDMGIDILKPDIQTSCREF-I 823 Query: 826 NDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMS 885 D IV+G+ AIK VG+ IE II R K G F L D+ R + KK+ RRVLE L+ Sbjct: 824 VKDNSIVFGLCAIKNVGDDAIEKIITTRKKDGPFLSLLDMSFRVNLKKVTRRVLESLVKG 883 Query: 886 GAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSY------A 939 GA D G RA ++ +L + + K E Q + + Sbjct: 884 GACDSFGCSRAGMLTALDKIIARTYKKIKDEQSNQGSLLAFAPKIESVSLPGIGFTCEEQ 943 Query: 940 SCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGL 999 + W E L E+E LG +LT HP+ Y +EI R +G L+++ I +A + Sbjct: 944 NMPEWDEDEKLLYEKEALGFFLTSHPLQTYRQEIYR-LGLQPLEEVREMNDKITIKSAII 1002 Query: 1000 VVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDF 1059 V R ++ KRGNR+ ++D + EV F++ L K ++LL ++ L+++ + + Sbjct: 1003 VNNIREILNKRGNRMAFVRVEDLTASAEVTFFSEELQKSRELLSSNQPLLLTATIDSRES 1062 Query: 1060 S-------------GGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLE 1106 + +K+ A V + A + ++ + ++ + L+ L+ Sbjct: 1063 TQNDTIDESDDTQLRSIKLRAISVESLSSACQNSELPISYYVDKNRLTTSGIEELKAILD 1122 Query: 1107 PHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDL 1146 H+ G VHL + + ++R G++W VSPS D+ Sbjct: 1123 KHK-GQTEVHLIFSLDNINCQVRLGSSWNVSPSPAFQQDM 1161 >UniRef50_C6J6J2 DNA polymerase III (Fragment) n=4 Tax=Bacteria RepID=C6J6J2_9BACL Length = 1110 Score = 1287 bits (3331), Expect = 0.0, Method: Composition-based stats. Identities = 437/1090 (40%), Positives = 631/1090 (57%), Gaps = 59/1090 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL VHS+YS++DG A+ LV KAAA GM ALA+TD + G V FY GIKPI Sbjct: 39 FVHLHVHSEYSLLDGAARLEDLVAKAAASGMKALALTDHGVMYGAVPFYKLCKKHGIKPI 98 Query: 66 VGADFNVQCDLLGDEL-------THLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDR 118 +G + + HL +LA N TGY+NL L S + G+ P ID Sbjct: 99 IGCEVYFTAGSRKERGSRKDQPIHHLILLAKNETGYRNLMKLCSIGHLEGFHY-KPRIDW 157 Query: 119 DWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDE 178 D L EGL+ LS G+V LLRG+ + Y+ F + ++LEL G P++ Sbjct: 158 DALQRHREGLVCLSACLGGEVPFHLLRGHYEEAKKAALRYQAAFGEDFYLELQDHGIPEQ 217 Query: 179 ESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQ 238 + V+LA G +V TND ++ D + ++ + + G T+DD R + ++ Q Sbjct: 218 KKVNPLLVQLAGEIGAELVVTNDAHYLSKEDAEVQDVLICVGTGKTVDDEDRLKMHTNQL 277 Query: 239 YMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF-PTGDMSTE-DYLVKRA 296 Y+++ EEM +LF +PEA ANT +IA C + + + LP + P + T YL + Sbjct: 278 YLKTAEEMAQLFPHLPEAYANTAKIADSCELELEFDRHILPAYRPIPEGHTAGSYLAELC 337 Query: 297 KEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGV 356 ++GL +R L D L R + ++RL EL++I MGF YFLIV +FI ++ NG+ Sbjct: 338 QQGLVDRYGEL--DVWRDLTEREKLEQRLRYELEIIASMGFSDYFLIVWDFIAFAHRNGI 395 Query: 357 PVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIE 416 GPGRGS AGSLVAY L+ITD+DP++++LLFERFLNPERV+MPD D+DF E+RD+VI Sbjct: 396 ATGPGRGSSAGSLVAYVLRITDVDPIKYNLLFERFLNPERVTMPDIDIDFSDERRDEVIA 455 Query: 417 HVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFE 476 +V D YG + V+QIITFGTMAA+A +RDVGR L P+G VD+++KLIP GMT+ +A + Sbjct: 456 YVVDKYGAEHVAQIITFGTMAARAAVRDVGRALNVPFGEVDKVAKLIPGHLGMTIERALK 515 Query: 477 AEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKH 536 P L +Y+ E VK L+DMA K+EG+ R+A HA GVVI+ +TD PL E Sbjct: 516 ESPDLKAMYDGSERVKRLLDMAMKVEGMPRHASTHAAGVVISRDPLTDAVPLQEGSE-HT 574 Query: 537 PVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKS 596 +TQ+ ++E GL+K DFLGLRTL+II + I ++ D +P +D + Sbjct: 575 ALTQYSMENLEAIGLLKMDFLGLRTLSIIERCMNWIKEQSGDAP----DFRLVPDNDPAT 630 Query: 597 FDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKH 656 ++ML R ETT VFQLES GM+ ++K ++P FED+I+L+AL+RPGP++ + +I KH Sbjct: 631 YEMLGRGETTGVFQLESTGMRRVLKEMKPSVFEDIISLLALYRPGPME--FIPKYIAGKH 688 Query: 657 GREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKK 716 G+ + YP H L+P+L+ TYGII+YQEQ+MQIA ++G++LG AD+LRRA+ KKK Sbjct: 689 GQITVEYP-----HPDLEPILKDTYGIIVYQEQIMQIASRMAGFSLGEADLLRRAVSKKK 743 Query: 717 PEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKA 776 E + +QR F G+ + G + A ++D++ +FA YGF ++H+AAY ++++QT +LKA Sbjct: 744 REVLDEQRGHFVSGSVQQGYTEDEANVVYDMIVRFADYGFARAHAAAYGVLAFQTAYLKA 803 Query: 777 HYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDD-------- 828 HYP +FMA+++TA + KV + EC RMG+ +LPPD+N F Sbjct: 804 HYPVQFMASMLTAVTGSHRKVAEYIVECRRMGIVVLPPDVNESSVLFTPQVGAGSADAAL 863 Query: 829 -----------------------GEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDL 865 G I +G+ AIK VG IE+I+ R + F L D Sbjct: 864 SGEAKGRDAKDGHAGSGQEPPALGVIRFGLAAIKNVGTQAIESILRERKER-PFDSLLDF 922 Query: 866 CARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFG 925 C R D + N+RV+E LI GAFD L HRA L+ L + ++AA + K Q +F Sbjct: 923 CRRVDLRTCNKRVIESLIQGGAFDSLPGHRAQLLAMLDETVEAALKWRKERDELQIQLFD 982 Query: 926 VLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDM 985 + IE Y + LD ERE LGLYL+GHP++ + +E G RL D+ Sbjct: 983 FVESPNWDIE--YPDVPKFTAAQQLDLERELLGLYLSGHPLDDFDALLEG-EGVDRLMDL 1039 Query: 986 HPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKD 1045 AG+VV+ + + TK+G + L+D+ R EV+LF + + +EK Sbjct: 1040 AEAPDDTRTVVAGMVVSVKTITTKQGKAMAFMELEDQIERCEVVLFPEVWRRSAAHVEKG 1099 Query: 1046 RILIVSGQVS 1055 +L + G V Sbjct: 1100 ALLALRGVVQ 1109 >UniRef50_C1F714 DNA polymerase III, alpha subunit n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F714_ACIC5 Length = 1173 Score = 1285 bits (3326), Expect = 0.0, Method: Composition-based stats. Identities = 457/1187 (38%), Positives = 687/1187 (57%), Gaps = 48/1187 (4%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M+E F HL +H+DYS++DG LV A++G ++AITD N+ G V F+ A Sbjct: 1 MAE--FTHLHLHTDYSLLDGACDVEKLVGHVASIGQTSVAITDHGNIYGAVHFFEAAKKK 58 Query: 61 GIKPIVGADFNVQCDLLG------DELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGP 114 GIKPI+G + + D+ HL VLA + GY+NL + S+A G+ P Sbjct: 59 GIKPILGCELYICQKEDHRADPQGDDYNHLLVLAESEEGYRNLVRITSEASLHGF-YRKP 117 Query: 115 IIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRT 173 I + +L E GLI SG G+ ++L+ N A Y++ F +FLE+ Sbjct: 118 RISKKYLAEHAAGLIGFSGCLAGEFCQNLMADNYQAARATAAQYQDIFGRGNFFLEIQDQ 177 Query: 174 GRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRN 233 G E+ L + +P+VATND ++ D AH++ + + ++ DPKR + Sbjct: 178 GLELEKKIHADMFRLEKDLDIPLVATNDSHYLCEDDHHAHDVLLCVQTAGSIHDPKRFKF 237 Query: 234 YSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMST-EDYL 292 S Q Y++S EM LF PE ++ T++ A+RCN+ + + P+F T + Y Sbjct: 238 DSDQFYVKSAAEMERLFPHAPEVVSRTMQFAERCNLKLNKVDNPFPEFAVPPGHTIDSYF 297 Query: 293 VKRAKEGLEERLAFLFPDEEERLKRRP---EYDERLETELQVINQMGFPGYFLIVMEFIQ 349 +EG ++RL ++R R +Y+ RLE E+ +I QM F GYFLIV +FI+ Sbjct: 298 EHVCREGFKKRLDTAIRHLQDRGILRSPISDYEARLEREIGIIKQMKFSGYFLIVWDFIR 357 Query: 350 WSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCME 409 ++KD+ +PVGPGRGS AGSLV Y ++ITD+DPL+ LLFERFLNPERVSMPD D+DFCM Sbjct: 358 YAKDHDIPVGPGRGSAAGSLVGYVMEITDIDPLQNVLLFERFLNPERVSMPDIDIDFCMN 417 Query: 410 KRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGM 469 +R +VIE+V YGR+ V+QIITF TMAAKA I+DVGR L PYG VDRI+K+IP G+ Sbjct: 418 RRGEVIEYVTRKYGREQVAQIITFNTMAAKAAIKDVGRALDMPYGDVDRIAKMIPATIGV 477 Query: 470 TLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLY 529 T+ +A PQL E YE + +++ LID A++LEG+ R AG HA GVVIAP +TD PL Sbjct: 478 TIDQALTDSPQLQEAYEGNTQIRELIDTAKRLEGLVRGAGVHAAGVVIAPRPLTDLVPLS 537 Query: 530 CDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAI 589 + VT +D VE GL+K DFLGL TLT+I+ L+MI K R + +D+A + Sbjct: 538 RSKN-DEIVTAYDMKAVEKMGLLKMDFLGLTTLTVIDDCLKMIRKNRGET----VDMAKV 592 Query: 590 PLDDKKSFD-MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMV 648 PLDD+++++ + R+ T+ VFQ ES GM+D+++R +P C ED+ AL AL+RPGP+Q GM+ Sbjct: 593 PLDDQETYERVFHRALTSGVFQFESGGMRDVLRRYKPTCVEDLTALNALYRPGPIQGGMI 652 Query: 649 DNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADML 708 D+FI+RK GR ++ Y L+ +L+ T G+I+YQEQVMQIA VL+GY+LG AD+L Sbjct: 653 DDFIERKWGRRKVEYEL-----PPLETILKETLGVIVYQEQVMQIANVLAGYSLGEADLL 707 Query: 709 RRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVS 768 RRAMGKK PEEMAKQR F GA + + +KIFDL+E+FAGYGFNKSHSAAYAL++ Sbjct: 708 RRAMGKKNPEEMAKQRDRFVSGALEREFPKDKIVKIFDLMEQFAGYGFNKSHSAAYALLA 767 Query: 769 YQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDD 828 Y T WLK HYP EFMAA++T+++ E VV + EC + + + PPD+ F Sbjct: 768 YHTAWLKTHYPVEFMAALLTSEISKPENVVKYIQECREIEIPVEPPDVLFSDADFTP-HG 826 Query: 829 GEIVYGIGAIKGVGEGPIEAIIEAR----NKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884 I +G+ AIK VG I++I++AR +G F+ ++ C + D + +N+RV+E LI Sbjct: 827 KSIRFGLTAIKNVGRNAIDSILDARGKLAAEGKSFQNFWEFCEKVDLRLMNKRVIESLIK 886 Query: 885 SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVL---AEEPEQIEQSYASC 941 +GA D G RA LM S+ A++ A + + EA GQ+ +FG+ A + Sbjct: 887 AGALDSFG-RRAQLMASVDKAIERAQKAQRDEAAGQSGLFGLFDADAPASASPADDLPNV 945 Query: 942 QPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTE-----------R 990 W E + L E+E LG +++GHP+++Y +++ G + + Sbjct: 946 PDWEEALRLQSEKEVLGFFVSGHPLDRYAEKLRNLPGIIDTATALEMKPAPPTGRRGQSN 1005 Query: 991 GKVITAAGLVVAARVMVTKR-GNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILI 1049 I AG++V +V +KR G+ +L+D +G+++++ F ++ L+ + ++ Sbjct: 1006 ENEIAIAGMIVGLKVAKSKRSGDLYAQASLEDATGKIDLICFPRDYERLADSLKMEAPVV 1065 Query: 1050 VSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHR 1109 V G + ++ K+ + +D+ + K + I + +I + L L Q + Sbjct: 1066 VRGALRAEE-EAAPKLAISSIQALDDVKVKLPSNVRIRVQLDRISESTLEELHQLISA-V 1123 Query: 1110 SGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSEQVE 1156 G + L ++ + + V+ ++ L+G V+ Sbjct: 1124 PGPGKMMLNLEKKGEYCVVMEPEGFTVAADRAFIDQAELLLGRGSVQ 1170 >UniRef50_B8D1J8 DNA polymerase III catalytic subunit, DnaE type n=1 Tax=Halothermothrix orenii H 168 RepID=B8D1J8_HALOH Length = 1122 Score = 1275 bits (3299), Expect = 0.0, Method: Composition-based stats. Identities = 443/1164 (38%), Positives = 681/1164 (58%), Gaps = 55/1164 (4%) Query: 3 EPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGI 62 FVHL VH++YS++DG + LVKK MP +AITD L G + FY GI Sbjct: 2 TANFVHLHVHTEYSLLDGAIRLKDLVKKTKEYDMPGVAITDHGVLYGAIDFYKLARQYGI 61 Query: 63 KPIVGADFNVQCDLLGDE----LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDR 118 KPI+G + + + HL ++A N GY NLT ++S+++ G+ P +D+ Sbjct: 62 KPIIGCEVYLTPSSFRKKDTRERYHLLLIAQNREGYHNLTKIVSRSWLEGF-YYKPRVDK 120 Query: 119 DWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRTGRPD 177 D L + +GLI LS G++ + +L+ ++ + YE F + ++LEL D Sbjct: 121 DLLYQHRKGLICLSSCLQGEIPQLILKDRLQEAEQAIKEYEAIFGRESFYLELQDHNLGD 180 Query: 178 EESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQ 237 E+ +EL+ G P+V TND +++ D H++ +A+ G T++D R + Sbjct: 181 EKLVNSRLIELSNKLGTPLVVTNDSHYLNREDASLHDVLLAMQTGKTINDENRLSFTGEE 240 Query: 238 QYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTG--DMSTEDYLVKR 295 Y +S +EM LF DI + NTV+IA+ ++ +++P FP D + + L + Sbjct: 241 FYFKSPDEMKSLFPDIEDTYLNTVKIAEMTDIDFDFNTFYIPDFPDAKGDKTPVEILRDK 300 Query: 296 AKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNG 355 ++GL+E+ L+ E ERL+ EL++I +MG+ YFLIV +F+ +++ G Sbjct: 301 CQQGLKEK----------GLEDNKEARERLQYELEIIEEMGYVSYFLIVWDFVNFARQKG 350 Query: 356 VPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVI 415 + VGPGRGS AGSLV+Y L IT ++PL++ L+FERFLNPERV+MPD D+DF E+RD++I Sbjct: 351 IRVGPGRGSAAGSLVSYLLGITKINPLKYGLIFERFLNPERVTMPDIDIDF-DERRDEII 409 Query: 416 EHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAF 475 E+V YGR+ V+QI TFGTMAA+A IRDVGRVL P VDRI+K++P +T+ +A Sbjct: 410 EYVKQRYGREKVAQIGTFGTMAARAAIRDVGRVLDIPLRKVDRIAKMVPGR--VTIKEAL 467 Query: 476 EAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGK 535 + L ++Y+ D EVK L+D A ++EG+ R+ HA GV+I P +++ PL +E Sbjct: 468 KMNDNLNKLYQQDSEVKRLLDYACRVEGMPRHISTHAAGVIIGPGDLSNIIPLQTQDEN- 526 Query: 536 HPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKK 595 +TQF ++E GL+K DFLGLR LTIIN L +I+KR + +D+ IPL+D + Sbjct: 527 -IITQFHMENLEELGLLKMDFLGLRNLTIINKTLNLISKRYGRE----IDVDNIPLNDDR 581 Query: 596 SFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRK 655 + MLQ +T VFQ+ESR +DL +RL+P+ F D+IAL+AL RPGPL S +V+ +I + Sbjct: 582 VYKMLQEGKTPGVFQMESRLFQDLNRRLKPEKFSDLIALLALGRPGPLGSNLVEQYIKSR 641 Query: 656 HGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKK 715 HG E SY H L+P+LE T+G+ILYQEQVM+IA L+GYT+G AD+LRR MGKK Sbjct: 642 HGEIEPSY-----LHPELEPILEETFGLILYQEQVMEIASKLAGYTMGEADLLRRGMGKK 696 Query: 716 KPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 775 K E ++K+R F EGA KNGI E+A KIFD +E FAGYGFNKSHS AYA+++YQT +LK Sbjct: 697 KKELISKERERFVEGAVKNGIEKEVAHKIFDQMEYFAGYGFNKSHSTAYAMLAYQTAYLK 756 Query: 776 AHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGI 835 A+YP+EFMAA+++ M+N +KV + EC MGL++LPPD+N + F DG+I +G+ Sbjct: 757 ANYPSEFMAALLSTVMNNLDKVGQYIRECQEMGLRVLPPDVNRSGFEFETTPDGDISFGL 816 Query: 836 GAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHR 895 AIK VG IEAIIE RN+ G + L D R DT ++N +V+E LI +G FD +R Sbjct: 817 KAIKNVGIKAIEAIIEERNRNGNYSSLEDFIERVDTGRVNLQVIESLIKAGVFDSFNTYR 876 Query: 896 AALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPE--QIEQSYASCQPWPEQVVLDGE 953 + ++ + + ++ A GQ F + +E+ + Y + P + L+ E Sbjct: 877 SQMLIKYEEIYEKLGSRSRNRAQGQTSFFDLFSEDEKFYNQSIEYPEIEELPLEERLNQE 936 Query: 954 RETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNR 1013 +E LG+YL+ HP++ + +I+ ++ G +T G+VV + +T+ + Sbjct: 937 KEYLGIYLSAHPLDPFKDKIDHFISTT--SQDIKDYEGDKVTIGGVVVDFKEHITRTNKK 994 Query: 1014 IGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDI 1073 + TL+D G ++V++F D ++ LEK L+++G+V + + +++ + Sbjct: 995 MAFLTLEDWLGNIKVVVFPDLYNQLDINLEKGLKLLITGRV------DDGSVISNKIISL 1048 Query: 1074 DEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGAT 1133 ++ I + +D L L+ + +R G P+ + L G Sbjct: 1049 EQD--------FIEIDVTSLDSDKLKELKNLCQQYR-GDCPLFINV----GDTCLLSGIN 1095 Query: 1134 WRVSPSDRLLNDLRGLIGSEQVEL 1157 + VS L + L+G V++ Sbjct: 1096 YWVSDGGAFLQKAKKLVGINNVKI 1119 >UniRef50_C1SP26 DNA polymerase III, alpha subunit n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SP26_9BACT Length = 1188 Score = 1275 bits (3299), Expect = 0.0, Method: Composition-based stats. Identities = 468/1181 (39%), Positives = 718/1181 (60%), Gaps = 46/1181 (3%) Query: 1 MSEPR-FVHLRVHSDYSMIDGLAKTAPLVKKAAALGM-PALAITDFTNLCGLVKFYGAGH 58 M+ + FVHL +H+ YS++DG L++K GM P + I+D + G+V FY Sbjct: 10 MNNSKDFVHLHLHTQYSLLDGAILVGDLMQKIKEKGMTPMVGISDHGTMHGIVDFYRQAR 69 Query: 59 GAGIKPIVGADFNVQCDLLG--------DELTHLTVLAANNTGYQNLTLLISKAYQRGYG 110 IKPI+G + V D + HL + A NN G NL L+S A G+ Sbjct: 70 ANDIKPILGCEVYVAPDSRFNTTYERGQERNHHLVLQAVNNKGLSNLQKLVSLAQFEGFH 129 Query: 111 AAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLE 169 P +D++ + + +EGLI +S G++ R ++R Y + F D +FLE Sbjct: 130 Y-KPRVDKEIMAQYSEGLIAMSACLAGEIPRKIIRDQYDEAVAAAHEYRDIFGKDNFFLE 188 Query: 170 LIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPK 229 + G ++ ++++ G+P+VATND +++ D +HE+ + I T++ P Sbjct: 189 IQENGIEEQLMVNRNIIKMSRDSGIPLVATNDCHYLNKGDHLSHEVLICIQTQSTINSPN 248 Query: 230 RPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-ST 288 R +S Q ++++ EEM F ++P+AL NTVEIA RCN ++ GE LP++ + + Sbjct: 249 RFEIHSDQLWVKTPEEMWAAFGEVPDALTNTVEIANRCNTSITFGELHLPEYEVPEGYTI 308 Query: 289 EDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFI 348 YL A++GL E+LA + ++ Y +R++ E VI F GYFLIV +F+ Sbjct: 309 SSYLEHLARKGLHEKLAKIPSEK------HQIYYDRMQKEFDVIIGKNFAGYFLIVWDFM 362 Query: 349 QWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCM 408 +S+ G+PVGPGRGSGAGSLVAY+L ITDLDP+ F+LLFERFLNPER SMPDFD+DFC+ Sbjct: 363 NYSRSVGIPVGPGRGSGAGSLVAYSLGITDLDPIYFNLLFERFLNPERSSMPDFDIDFCV 422 Query: 409 EKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG 468 + R+QVI++V + YG D VSQIITFG + ++ +RDVGRVL P VD+++K IP DPG Sbjct: 423 KGREQVIKYVREKYGDDRVSQIITFGKLLGRSTVRDVGRVLEVPLPIVDKLAKAIPSDPG 482 Query: 469 MTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPL 528 MTL KA + + L ++++A E+ + +++ A KLEG+ RN G HA G+VI+ + ++ PL Sbjct: 483 MTLRKALKKDEDLRKVFQAAEQGELILNHAVKLEGLVRNTGMHAAGIVISDKPLNEYVPL 542 Query: 529 YCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAA 588 + + + QF+K +E GLVKFDFLGL LTII+ A++ I K R ++ LDIA+ Sbjct: 543 CRGQNNE-VIAQFEKDTLESVGLVKFDFLGLNNLTIIDEAIKQIKKNRGED----LDIAS 597 Query: 589 IPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMV 648 IPLD+KK +++L R +TTAVFQLES GMK+L+K+L+P+ FED+IALVAL+RPGP++SGM+ Sbjct: 598 IPLDNKKVYELLSRGDTTAVFQLESSGMKNLLKKLRPEQFEDIIALVALYRPGPMESGML 657 Query: 649 DNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADML 708 D+F+ RK+G EEI Y L+ +L+ T G+++YQEQVMQIAQ++ GY+LG AD L Sbjct: 658 DSFVKRKYGEEEIDY-----IFPDLEEILKETRGVVIYQEQVMQIAQIIGGYSLGSADNL 712 Query: 709 RRAMGKKKPEEMAKQRSVF-------AEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHS 761 RRAMGKKK EM KQ+ F GA+ G + ++A +FD + KFAGYGFNKSHS Sbjct: 713 RRAMGKKKAAEMEKQKQFFLYGDGDTIPGAKARGYDMKMAEDLFDKLAKFAGYGFNKSHS 772 Query: 762 AAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLY 821 AAYAL+SYQT +LKA YP E+MAA+++ ++D +K+V +EC MG+ +LPP+IN Sbjct: 773 AAYALISYQTAYLKALYPVEYMAAILSCEIDKGDKIVTFTEECKNMGIDVLPPNINKSGV 832 Query: 822 HFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEK 881 +F + I +G+GAIK VG IEA ++ R+K G F+ ++D C R D + N+RVLE Sbjct: 833 NFEIEG-TAIHFGLGAIKNVGFNAIEAALQERDKNGEFKNIYDFCERVDLRACNKRVLES 891 Query: 882 LIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADM--FGVLAEEPEQIEQSYA 939 L+ +GAFD G +R + + AL+ + K G + F V E E+ + + Sbjct: 892 LVKAGAFDCSGKNRRQNLQVIERALEEGQRKHKMAEQGIMSIEAFLVDEESDEEEQFFFP 951 Query: 940 SCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGL 999 + PE +L E+E L Y++ HP+ Y ++ + + + ++ + I GL Sbjct: 952 DVEEMPENELLKMEKEVLDFYISNHPLAIYNNILKTF--TIPIGEVANPDSEGDIVIGGL 1009 Query: 1000 VVAARVMVT-KRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDD 1058 V + +VT K+G ++ ++D +EV++F ++Y + LE D+I+I++G++ D Sbjct: 1010 VKHVKRIVTKKKGEKMAFANVEDMDSEVEVVVFPRTFEQYSRHLENDKIIIIAGKI--DH 1067 Query: 1059 FSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLY 1118 + A ++MD+ EA E + I LT + ++LN+L+ +L H G +PV LY Sbjct: 1068 KEDNTVIMADKIMDVTEAMEMLTELVTIKLTSTGMTSEILNKLKTTLATHH-GDVPVKLY 1126 Query: 1119 YQRADA-RARLRFGATWRVSPSDRLLNDLRGLIGSEQVELE 1158 ++ A ++ G + + P N++ L+G ++ E++ Sbjct: 1127 LEKPKAYGVHIKTGPDFGIKPGYDFYNEIDNLLGKDRYEIK 1167 >UniRef50_D1B9W1 DNA polymerase III, alpha subunit n=3 Tax=Synergistaceae RepID=D1B9W1_THEAS Length = 1132 Score = 1273 bits (3294), Expect = 0.0, Method: Composition-based stats. Identities = 469/1160 (40%), Positives = 678/1160 (58%), Gaps = 46/1160 (3%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS FVHL VHS+YS++DG + LV A++GM A+AITD + G +FY Sbjct: 1 MSVE-FVHLHVHSEYSLLDGAIRCGELVDTVASMGMGAVAITDHGVMYGCEEFYEKCVAK 59 Query: 61 GIKPIVGADFNVQCDLLGDE-----LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPI 115 GIKPI+G + V + + HL + A + GY+NL L+S A G+ P Sbjct: 60 GIKPIIGCEVYVDPNGMDSRDGKGRNNHLVLWAEDQVGYKNLIKLVSIANTDGF-YYKPR 118 Query: 116 IDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPD-RYFLELIRTG 174 +D L + ++G+I S G++ + L+ G+ Y + F + +F+E++ Sbjct: 119 VDHRVLSQHSKGIIASSACLAGEIPQLLMDGDFDGAVSRANLYRDIFGEGNFFIEIMYNQ 178 Query: 175 RPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNY 234 P++ + LA+ LP++ATND ++ D H++ + + T+D P R R Sbjct: 179 LPEQAMANAELIRLAKRCSLPLIATNDAHYLRREDASWHDVLLCVQTNSTVDTPDRYRFG 238 Query: 235 SPQQYMRSEEEMCELFA-DIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMST-EDYL 292 S Y+R+ EEM L ++PEAL NT+ +A+RCNV ++LG Y LP+FP + T + +L Sbjct: 239 SDDFYLRTPEEMWSLLGGEVPEALRNTLLVAERCNVELQLGHYMLPEFPLPEGETLDSHL 298 Query: 293 VKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSK 352 K A+EGL R+ P EY +RLE EL VI QMGFPGYF IV + I +K Sbjct: 299 EKMAREGLRARVGEPIP---------QEYRDRLEYELGVIKQMGFPGYFCIVADIITAAK 349 Query: 353 DNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRD 412 G+P+GPGRGS AGSLVA+ L IT+LDP+++ LLFERFLNPER+SMPD D D ++RD Sbjct: 350 SRGIPIGPGRGSAAGSLVAWCLGITELDPIKYKLLFERFLNPERISMPDIDTDVSDKRRD 409 Query: 413 QVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA 472 +V+ ++ + YG D VSQIITF M +KA IRDVGR L PY VDR++KL+P D +L Sbjct: 410 EVLAYIVEKYGIDRVSQIITFDRMKSKAAIRDVGRALAMPYPEVDRVAKLVP-DGVKSLK 468 Query: 473 KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDE 532 +A E P L E++ +D +V+ L+D A +EG+ R+ +HA GVVI P + + P+ Sbjct: 469 EALEKSPDLKEVHSSDPKVRRLVDTASHIEGIARHCSQHAAGVVITPVPLVEMVPVRKIG 528 Query: 533 EGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLD 592 E VTQ+ +E+ GLVK DFLGLRTL++I AL + R +D+ AIPLD Sbjct: 529 E-NQVVTQYSMEPLEHLGLVKMDFLGLRTLSVIEGALRNVEANRGL----KIDLRAIPLD 583 Query: 593 DKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFI 652 D K+FDMLQR++T VFQLES GM+DL++RL+PDCFED+IA++AL+RPGPL SGMVD++I Sbjct: 584 DPKTFDMLQRADTLGVFQLESSGMQDLLRRLRPDCFEDLIAVLALYRPGPLGSGMVDDYI 643 Query: 653 DRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAM 712 +RKHGR ++YP H L+ L+ TYG+ILYQEQVMQ A L+GYTLG AD+LRRAM Sbjct: 644 ERKHGRSPVTYP-----HPCLEEALKETYGVILYQEQVMQCAAELAGYTLGEADLLRRAM 698 Query: 713 GKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTL 772 GKKK + M KQRS F EGA+ G+ ++A IF+ +EKFA YGFNKSHSAAYAL+SYQT Sbjct: 699 GKKKADVMEKQRSKFVEGAKARGVEPKMAEDIFNSIEKFAEYGFNKSHSAAYALISYQTA 758 Query: 773 WLKAHYPAEFMAAVMTADMDNT-EKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEI 831 +LKAHY EF+A+ +++ + + + + + E +G +LPPDIN F + I Sbjct: 759 YLKAHYGPEFLASYLSSIVGSRMDILGRYIKEVRNLGYSVLPPDINESQSDFVAVGE-VI 817 Query: 832 VYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRL 891 G+ A+ VG+ ++AI+ AR++ G FR +D R D + +NR V+E LI +GAFD L Sbjct: 818 RLGLSAVAKVGDSAVDAILRARSE-GPFRSFWDFLCRVDLRTVNRGVIENLIKAGAFDVL 876 Query: 892 GPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLD 951 P+R L+++L L+ A + + + Q +F +E E+ E L+ Sbjct: 877 CPNRRMLLDNLEGLLEMAQR--RCDPSKQVSLFD--GDEEEEEEPKMDVVDDVDIHQRLE 932 Query: 952 GERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITA-AGLVVAARVMVTKR 1010 ERE LGLY++GHP Q E+ ++ ++ D+ V AGL+ R TKR Sbjct: 933 WEREVLGLYISGHPFEQVEGELAPFL-VCKISDLRSWRSSNVAPVTAGLLAGIRERYTKR 991 Query: 1011 GNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREV 1070 G+ +GI ++D ++E + F K + +L I + SG V D G L + E+ Sbjct: 992 GDPMGILEMEDGDDKVEAVCFPKVWQKVKPMLRTGGIYVFSGMVKDD---GRLSVLIDEI 1048 Query: 1071 MDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRF 1130 M+ E + + + ++ L L + L+ H SG P+ +Y + L Sbjct: 1049 MEAREWIREKVPVAKLRVLSKRA--GLFRDLARELKGH-SGPSPLLIYVEEGGIITALW- 1104 Query: 1131 GATWRVSPSDRLLNDLRGLI 1150 + +V D L L Sbjct: 1105 SRSIKVRVDDSLRRSLEDAF 1124 >UniRef50_Q3Z6I2 DNA polymerase III, alpha subunit n=5 Tax=Dehalococcoides RepID=Q3Z6I2_DEHE1 Length = 1170 Score = 1272 bits (3293), Expect = 0.0, Method: Composition-based stats. Identities = 439/1195 (36%), Positives = 650/1195 (54%), Gaps = 70/1195 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F HL VH+++S++DG+ + + LV +A LGM ALAITD + G+ +FY AGIKPI Sbjct: 2 FCHLHVHTEFSLLDGMCRISQLVARAKELGMEALAITDHGTMHGIPRFYKEAKEAGIKPI 61 Query: 66 VGADFNVQCDLLGDE------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRD 119 +G++F + + HL +LA NN GY NL L S+++ G+ P ID++ Sbjct: 62 LGSEFYLAYGDRTAKTAADKNYYHLVLLAKNNKGYHNLIQLSSRSHIEGF-YYKPRIDKE 120 Query: 120 WLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEE 179 L + +EGL+ LS G+V R +L E +Y++ F + Y++E+ R PD E Sbjct: 121 LLEKYSEGLVCLSACPSGEVPRLILENRFDEAREAALWYKKTF-ENYYIEIQRHPMPDLE 179 Query: 180 SYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQY 239 + +A +P+VATND ++D D H++ + I + D KR + Y Sbjct: 180 KINSVLIPMARELDIPLVATNDTHYLDKEDAPYHDLLLCIGTNALVSDEKRMKMEGDYFY 239 Query: 240 MRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKRAKE 298 ++S EEM E + DIP+A+ NT +IA+ CNV++ G LP+ + ++YL E Sbjct: 240 LKSPEEMAEAYQDIPDAIENTAKIAEMCNVSLDFGRLHLPEIDIPAGKTPDEYLADLCYE 299 Query: 299 GLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPV 358 GL + E +RL+ EL VI F YFL+ + I++ K+ G+ Sbjct: 300 GLPKFYPD----------ASQEILDRLKYELDVIKTTEFANYFLVTWDIIRFVKEKGLYY 349 Query: 359 GPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHV 418 G RGS A S+V Y L IT LDP+++ L+FERFLN ER MPD D+DF ++R++VIE+V Sbjct: 350 GV-RGSAASSIVLYCLGITALDPIKYKLVFERFLNIERKEMPDIDMDFQDDRREEVIEYV 408 Query: 419 ADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAE 478 YGRD VSQIITFGT+ AKA +RD GR LG Y VDR++K+IP MTL KA E Sbjct: 409 VGKYGRDHVSQIITFGTLGAKAAVRDAGRALGMAYADVDRVAKVIPFSLHMTLDKAMEES 468 Query: 479 PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEG---K 535 +L ++Y D V+ L+D ARK+EG++R+A HA GVVI+ +TD PL + Sbjct: 469 TELKDMYNQDSVVRNLVDAARKIEGLSRHASTHAAGVVISKDPLTDHVPLQRLSKENNLG 528 Query: 536 HPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKK 595 +TQ+ D+ GL+K DFLGL L I+ A +I + ++ +D AIPLDD K Sbjct: 529 LVMTQYTMEDIAKIGLLKMDFLGLVNLNILGKACAVIKEYTGQD----IDPLAIPLDDVK 584 Query: 596 SFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRK 655 +F++L ET VFQLE GM+ IK L+P F D+ A+VAL+RPGP++ + FI K Sbjct: 585 TFELLAAGETVGVFQLEGTGMRRYIKELKPTVFSDIGAMVALYRPGPMEQ--IPRFIKSK 642 Query: 656 HGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKK 715 HG E I+YP H +L+P+LE TYG+I+YQEQV+ IAQ SGYTLG AD+LR+AMGKK Sbjct: 643 HGLEPITYP-----HPALEPILEETYGVIVYQEQVLFIAQTFSGYTLGQADILRKAMGKK 697 Query: 716 KPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 775 M KQ++ F +GA KNG E+A ++F LVE FAGY FNK+H+ +YAL++YQT +LK Sbjct: 698 IAAVMQKQKANFIDGALKNGYTPEIAEEVFALVEPFAGYAFNKAHATSYALIAYQTAYLK 757 Query: 776 AHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDD----GEI 831 A+YP E++ A + A D TEKVV V E MG+++LPPDIN +F + + +I Sbjct: 758 ANYPVEYITAYLQAFCDVTEKVVTAVTEARHMGIEVLPPDINRSGVNFEIEQNEDGVKKI 817 Query: 832 VYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRL 891 +G+ A+K VG +E I+ R G + + DLC R + LN+RV+E L+ +GA D L Sbjct: 818 RFGLAAVKNVGVAAVEPIVAERKANGEYLSVEDLCRRAEGSSLNKRVMESLVKAGALDSL 877 Query: 892 GPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ-PWPEQVVL 950 G R L+ +L + L A + K + Q MF + ++ S + P + L Sbjct: 878 G-DRGTLLFNLPNILSLAQREQKLKDSNQTTMFDLFGQQSPMPMPSLEMAESPVTTREKL 936 Query: 951 DGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKR 1010 E+E +G++++ HP Y + V + + +T AG+V + RV T+ Sbjct: 937 QWEKELVGIFISEHPFTPYASAAQE-VTTALCGQIDEELDNQPVTVAGMVASVRVSATRE 995 Query: 1011 GNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREV 1070 G + ++D GR+EV + + L E+ IL+V G+ + + A +V Sbjct: 996 GKPFVMAEIEDLVGRVEVAAWPKVYAATKALWEEGNILLVEGKAVV--RGDRVSIHAEKV 1053 Query: 1071 MDIDEAREKYARGLAISLTDRQIDD-------------------------QLLNRLRQSL 1105 +K A + I+ + +D LN + + L Sbjct: 1054 SRYQPETDKKAAPVFINAPQPKAEDKEPPAPQLQRLVVCIQQTENEGRDIDCLNEVVEIL 1113 Query: 1106 EPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSEQVELEFD 1160 + + G V L + L+ V L + L L+GS V LE + Sbjct: 1114 KQY-PGETEVRLCVVNHERVFILKMPD-IWVYYCPELKSKLAALVGSANVRLENN 1166 >UniRef50_Q1PZM1 Similar to DNA polymerase III, alpha subunit n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZM1_9BACT Length = 1155 Score = 1272 bits (3293), Expect = 0.0, Method: Composition-based stats. Identities = 458/1174 (39%), Positives = 701/1174 (59%), Gaps = 43/1174 (3%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M FVHL VHS+YS++DG K LV KA MPALA+TD N+ G ++FY A A Sbjct: 1 MDTNNFVHLHVHSEYSLLDGACKIKDLVSKALHFKMPALALTDHGNMYGAIEFYEAAQSA 60 Query: 61 GIKPIVGADFNVQCDLLGDELT--------HLTVLAANNTGYQNLTLLISKAYQRGYGAA 112 GIKPI+G + V D+ + H+T+LA N GY+NL L + AY G+ Sbjct: 61 GIKPIIGYEAYVAQGGRLDKESKNGKETLSHITLLAENYEGYRNLLKLSTSAYLEGF-YY 119 Query: 113 GPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDR-YFLELI 171 P ID++ L + G+I LSG ++ R L Y E F + ++LE+ Sbjct: 120 KPRIDKELLKSHSAGIICLSGCMASEINRHLSFDRHDDAMNLAIEYLELFGENHFYLEIQ 179 Query: 172 RTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRP 231 P +E + AA ++ + +P+VATNDV +++ D AH+ + I+ G + D +R Sbjct: 180 NNKIPLQEKLVSAAFKIGKTLNIPLVATNDVHYMNIDDAVAHDALLCINTGKRVSDRQRL 239 Query: 232 RNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STED 290 R + + Y ++ +EM LF +IP AL NT+ IA+RC+V + G+ LP+F + S + Sbjct: 240 RFDTNEFYFKNYQEMHALFKEIPHALENTLHIAERCDVKMDFGKLHLPKFTPPEGISNKA 299 Query: 291 YLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQW 350 YL K +EG+ + + P ERL+ EL+VI + GF YFLIV +FI + Sbjct: 300 YLRKLCEEGVIRKYGAILPH----------ISERLDHELKVIEKTGFVEYFLIVWDFIHY 349 Query: 351 SKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEK 410 + +P GRGSGAGS+VAY L IT++DP+E DLLFERFLN ER+SMPD D+DFC E Sbjct: 350 ANTLNIP-ATGRGSGAGSIVAYVLNITNIDPIENDLLFERFLNAERISMPDLDIDFCAEG 408 Query: 411 RDQVIEHVADMYGRD-AVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGM 469 R+++I +V + YG D V+QIITFGTM AKAVIRDVGRVL P VD+I+KLIP + Sbjct: 409 REEIIRYVREKYGGDSNVAQIITFGTMKAKAVIRDVGRVLDIPLSEVDKIAKLIPNTLNI 468 Query: 470 TLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLY 529 TL +A E EP L I +A+++ K L D+++KLEG+ R+A HA G+VI+ +T++ PL Sbjct: 469 TLEEALEQEPALKAICQAEKQFKELFDISKKLEGLCRHASVHAAGIVISDEPLTEYVPL- 527 Query: 530 CDEEGKHPVTQF-DKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAA 588 ++G TQ+ D+ V+ GL+K DFLG+R LT+I AL++I++ +D+A Sbjct: 528 -AKKGDAVTTQYYDEILVDKIGLLKADFLGVRKLTVIKRALQLIHETTR----EIIDLAK 582 Query: 589 IPLDDKKSFDMLQRSETTAVFQLE-SRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGM 647 IP+DDK ++ ML VFQ+E S+G K+L+K+L+PD F D++ LVAL+RPGPLQSGM Sbjct: 583 IPVDDKATYQMLSSGNVKGVFQVETSKGFKELLKKLKPDTFADILPLVALYRPGPLQSGM 642 Query: 648 VDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADM 707 VD+FI+RKHG+E + Y H +L+ +L+ TYG+ILYQEQVM+IA L+G+TL AD Sbjct: 643 VDSFINRKHGKEAVEY-----IHPTLELILKETYGVILYQEQVMRIANRLAGFTLNEADN 697 Query: 708 LRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALV 767 LR+AMGKKKPE MAK + F GA N I + A+KIF+L+E FAGYGFNKSHSAAYA++ Sbjct: 698 LRKAMGKKKPEIMAKFKDQFVNGAISNDIPKKTAIKIFELMEFFAGYGFNKSHSAAYAVI 757 Query: 768 SYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVND 827 +YQT +LK +YP ++M A ++ + NTEK++ +++C RM ++IL PD+N L F +++ Sbjct: 758 TYQTAYLKTNYPLQYMTAQLSCEKQNTEKIIDYIEDCRRMNIEILKPDVNESLSDFIISE 817 Query: 828 DGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGA 887 +I +G+G++K G+ IE+I+ AR KGG F + D C R D + +N++V+E L+ SG+ Sbjct: 818 GNKIRFGLGSVKNAGDKAIESIVSAREKGGKFSSILDFCKRVDLRTVNKQVIESLVKSGS 877 Query: 888 FDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLA--EEPEQIEQSYASCQPWP 945 FD L RA L+ SL A++ K + GQ +F + + + E + ++ PW Sbjct: 878 FDSLSDDRARLLASLDSAMELGSAVNKGKRKGQRALFDIGSAMDVIETGNTAISNTTPWN 937 Query: 946 EQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARV 1005 E + E+E+LG Y + P+++Y ++I + + ++ G + G++ + Sbjct: 938 ENEIRQAEKESLGFYFSSSPLSEYEEKI-KLLATNSSSEISELPEGTDVIIGGIITDIKK 996 Query: 1006 MVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKM 1065 TK+G+ + TLDD G ++ + F+ L +Y+ L + D ++ + G V + Sbjct: 997 STTKKGDPMMYITLDDMEGAIKCIAFSKELKEYEPLAKIDAVVFICGNV--GYKGSTPSV 1054 Query: 1066 TAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRA-DA 1124 E++ A ++ + + L D+ L +L+ ++ HR G P + + Sbjct: 1055 KINELIAGKNAFQRLVKSFGLRLEAAHFDETKLIQLKDLIKKHR-GACPFFIEIATPNNG 1113 Query: 1125 RARLRFGATWRVSPSDRLLNDLRGLIGSEQVELE 1158 +++ + + + +D L+ R L S+ + + Sbjct: 1114 SVQIKTSSQYSAAITDDFLSRTRELFDSQNLLIN 1147 >UniRef50_B5YIK8 DNA polymerase III alpha subunit n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YIK8_THEYD Length = 1135 Score = 1271 bits (3290), Expect = 0.0, Method: Composition-based stats. Identities = 464/1167 (39%), Positives = 692/1167 (59%), Gaps = 64/1167 (5%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS FVHL +H++YS++DG K L+++A MPA+AITD NL G+V+F+ + A Sbjct: 1 MSMSEFVHLHIHTEYSLLDGAIKINELIEQAKKYNMPAVAITDHGNLFGVVEFFKKANKA 60 Query: 61 GIKPIVGADFNVQCDLLGDEL-------------THLTVLAANNTGYQNLTLLISKAYQR 107 G+KPI+G + V D+ HLT+L N GY+NLT L++++Y Sbjct: 61 GVKPIIGCEVYVAPQSRFDKTKINKDPGMPEEASFHLTLLVENEEGYKNLTRLVTRSYLE 120 Query: 108 GYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYF 167 G+ P ID + L N+GL+ LSG G++ +++ N + ++ F + +F Sbjct: 121 GF-YYKPRIDMELLSMYNKGLLALSGCLKGEIPYNIVYENIERAENTAKTLKDIFGNNFF 179 Query: 168 LELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDD 227 LE+ P++ +EL++ +PVVATND ++ SD AHEI + I G T+ D Sbjct: 180 LEIQSNSLPEQTIANRGLIELSKKFDIPVVATNDCHYLHKSDARAHEILLCIQTGKTIKD 239 Query: 228 PKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM- 286 KR + S + Y +S EEM F +IPEAL NT++IA+RCN +RLGE+ LP++ Sbjct: 240 EKRLKFQSDEFYFKSPEEMYSAFVEIPEALKNTLQIAERCNFKLRLGEHKLPKYNVPQGY 299 Query: 287 STEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVME 346 + E+YL K A+EGL+ER +Y +RLE EL+VI +MGF YFLIV + Sbjct: 300 TAEEYLKKLAQEGLKERFKGNV---------AEDYIKRLEEELKVITEMGFASYFLIVWD 350 Query: 347 FIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 406 FI +++ +PVGPGRGS AGSLVAYALKITD+DP+++ LLFERFLNPER+S+PD DVDF Sbjct: 351 FINYARRKSIPVGPGRGSAAGSLVAYALKITDIDPIKYGLLFERFLNPERISLPDIDVDF 410 Query: 407 CMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPD 466 C ++R++VI++VA+ YG+D V+ IITFGTMAA+AV+RDVGR L PY VD+I+K+IP Sbjct: 411 CKDRREEVIQYVAENYGKDRVAHIITFGTMAARAVVRDVGRALNIPYADVDKIAKMIPF- 469 Query: 467 PGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 +L +A EP+L E+Y +E VK LID+A +LEG+ R+A +HA GVVI+P + D Sbjct: 470 ACPSLEEALNLEPRLKELYNKNETVKELIDIALRLEGLARHASQHAAGVVISPEPLEDLM 529 Query: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586 PLY + + ++QFD +E GL+KFDFLGL+TLT+I+ ++ + + +D+ Sbjct: 530 PLYKNSGEETVISQFDMKALEDVGLLKFDFLGLKTLTVIDDTIKYVKAQGK-----DIDL 584 Query: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 IPLDD +++ +L +TT VFQLESRGMK+L+KR++P FED+IALVAL+RPGPL SG Sbjct: 585 NNIPLDDSETYRLLSSGQTTGVFQLESRGMKELLKRMEPQRFEDLIALVALYRPGPLGSG 644 Query: 647 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 MVD+FI RK G + Y LK +L+ TYG+ILYQEQVM+IA ++G+T+G AD Sbjct: 645 MVDDFIKRKKGLVPVEYEL-----PELKDILDETYGVILYQEQVMKIANKIAGFTMGQAD 699 Query: 707 MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 +LR+AMGKK PE MA + F +GA+KNGI E A +F+++ F YGFNKSHSAAYA Sbjct: 700 VLRKAMGKKIPELMASLKEEFIQGAQKNGIPYEKAESLFNIMAAFGEYGFNKSHSAAYAY 759 Query: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 ++Y T +LKAHYP EF AA ++ +M +T K+V ++EC G++I PDIN F V Sbjct: 760 LAYITAYLKAHYPQEFFAANLSNEMGDTNKIVKFINECKAWGIEIKGPDINESDRAFTV- 818 Query: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 + I +G+ A+KGVG ++ I+ R K F + D R DT+K+N++V+E LI +G Sbjct: 819 KEKFIRFGLEAVKGVGGSALQCILNEREK-KKFTSIDDFLTRLDTRKVNKKVIESLIKAG 877 Query: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPE 946 AFD L P + +A H G G+ ++ + + W Sbjct: 878 AFDSLYP------QYTPNQARAIAMHELLSFKGVKSSRGLF--------FTHENIEAWDN 923 Query: 947 QVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDM---------HPTERGKVITAA 997 VL E+ +LG YLTGHP+ + + + + D+ + E I A Sbjct: 924 NTVLSEEKSSLGFYLTGHPMKPLRPVLNK-INVSTIADIFDTDEDDFVNNNEETHEIKIA 982 Query: 998 GLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFD 1057 G+V + ++G T++D +GR+EV+++ + K+ +L + +++ G + Sbjct: 983 GIVEEIKSKAKEKGVT-AYITIEDETGRVEVVIYPELFKKFSNILTEKNAILIKGIIF-- 1039 Query: 1058 DFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHL 1117 + K ARE+ D+ K ++I +D + ++L +RQ LE +G +++ Sbjct: 1040 KYPDSTKFLAREIEDLRNVDLKIKYEISIDCSDTEKAYRILKEVRQCLEERHNGEGNIYI 1099 Query: 1118 YYQRADARARLRFGATWRVSPSDRLLN 1144 D + + ++ Sbjct: 1100 CLNLPDYHVIILSPFEPCIDFETKIQK 1126 >UniRef50_UPI00017463A7 DNA polymerase III, alpha subunit n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017463A7 Length = 1155 Score = 1270 bits (3288), Expect = 0.0, Method: Composition-based stats. Identities = 472/1174 (40%), Positives = 685/1174 (58%), Gaps = 50/1174 (4%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS FVHL +H++YSM+DG + L+KKA +LGMPA+A+TD NL G ++FY + A Sbjct: 1 MSAS-FVHLHLHTEYSMLDGAVRIPDLMKKAKSLGMPAVAMTDHGNLFGAIEFYQEANKA 59 Query: 61 GIKPIVGADFNVQCDLLGDEL--------THLTVLAANNTGYQNLTLLISKAYQRGYGAA 112 GIKPI+G + + + ++ +HLT+LAANN GY NL L++ A+ G Sbjct: 60 GIKPIIGCEIYLAPGSMWEKKDVTGRKRSSHLTLLAANNEGYANLVKLVTLAHLDGM-YH 118 Query: 113 GPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELI 171 P +D++ L + +EGLI LSG G++ +L + V + + F D ++LEL Sbjct: 119 KPRVDKEALKKHSEGLICLSGCISGEINEFILTDREDEARKTVQEFIDIFGKDNFYLELH 178 Query: 172 RTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRP 231 G ++ + E + GL +VA NDV F++ D +AH++ + I + D KR Sbjct: 179 NHGMAQQQRCMLKLREFSREFGLKMVAANDVHFLNKEDHEAHDVMICIGTAANVHDEKR- 237 Query: 232 RNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE---YFLPQFPTGDMST 288 +YSP+ Y ++ E+M ELF D EA T+EIA++CN+ ++L PQFP + T Sbjct: 238 LHYSPEVYFKTAEQMRELFEDFEEACDTTLEIAEKCNIKLKLDASSIEKYPQFPPPEGQT 297 Query: 289 ED-YLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347 + Y + ++G+ R ER ERL+ EL +IN+M F YFLIV +F Sbjct: 298 REGYFRQLCEDGMIFRYGK------ERAMNDAMLRERLDYELGIINKMNFTSYFLIVWDF 351 Query: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 I+W++D+G+PVGPGRGS AGSLVAY+L ITDL P+ F L+FERFLNPERVS PD D+DFC Sbjct: 352 IKWARDHGIPVGPGRGSAAGSLVAYSLGITDLCPIRFGLIFERFLNPERVSPPDVDIDFC 411 Query: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467 +R +VIE+V YG +VS IITFGTM AK+V+RDVGRVLG YG DR+SK+IP + Sbjct: 412 QTRRPEVIEYVRQHYGERSVSHIITFGTMGAKSVVRDVGRVLGWSYGDADRLSKMIPTEL 471 Query: 468 GMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAP 527 + L A E P+L E + + L A LEG+TRNAG HA G+VI + +F P Sbjct: 472 NIDLESAVEKNPELKAALENESSTQQLWQYATFLEGMTRNAGIHAAGIVIGDQPLDNFIP 531 Query: 528 LYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIA 587 L EG+ V QF + G++K DFLGL+TLT+I A++ + R P ++ Sbjct: 532 LTRGSEGE-VVAQFAMGPLTDVGMLKMDFLGLKTLTVIKDAVDFVRLRF-----PDFNLD 585 Query: 588 AIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGM 647 A+PLDDK +++ML++ ET AVFQ+ES GM ++L+PD E++IAL+AL+RPGP+ Sbjct: 586 AVPLDDKTTYEMLRKGETIAVFQMESGGMALTCRQLEPDKIEEIIALLALYRPGPMDL-- 643 Query: 648 VDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADM 707 + +FI RK G + + Y H L+ V + TYGI++YQEQV + A +L+GY+LG AD+ Sbjct: 644 IPDFIKRKKGEQRVEY-----LHPLLEDVSKETYGILIYQEQVQKAANLLAGYSLGAADL 698 Query: 708 LRRAMGKKKPEEMAKQRSVFAEGAEK-NGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 LRRAMGKKKPEEM KQR++F +G + N I A+ A IFDL+EKFAGYGFNKSHSAAY + Sbjct: 699 LRRAMGKKKPEEMEKQRTIFVKGCGETNQIPAKKANDIFDLLEKFAGYGFNKSHSAAYGI 758 Query: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 V+Y+T +LKA+YP EFMAAV++ ++++T+K+ G V EC RMG+ ILPPD+N F Sbjct: 759 VTYRTAYLKANYPVEFMAAVLSYEVNSTDKLAGFVSECQRMGITILPPDVNKSSLKFAPE 818 Query: 827 ------DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLE 880 I YG+ A+K VGE + A I R K G F L D CAR D++ +N+R++E Sbjct: 819 CIEGSDVPNAIRYGLAAVKNVGEAAMAAAIAERTKNGPFTSLEDFCARVDSRMINKRLME 878 Query: 881 KLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAE-EPEQIEQSYA 939 LI G FD G RA + L + L A K G +F + A Sbjct: 879 PLIKVGGFDWTGQDRAGMCFVLDEVLSNASSRQKERKAGMVSLFDDDTMGATKNTLAKSA 938 Query: 940 SCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGL 999 PW ++ ++ E+E LG +++GHP++ Y E E + AGL Sbjct: 939 GPPPWKKEELMAFEKELLGFFVSGHPLDNYRHIYESKYITRIADVQEVKEERVSLRVAGL 998 Query: 1000 VVAARVMVTKRGNR-IGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDD 1058 + V TK+ NR L+D SG +EV+ +++ +K++ LL + ++ + G+ D Sbjct: 999 IQRLEVKYTKKDNRAFATFALEDFSGTVEVISWSEGYEKFKDLLVEGGVIGMKGRCEKDS 1058 Query: 1059 FSGGLKMTAREVMDIDEAREK----YARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIP 1114 S ++MT +EV + + + + LA+ + + + L+ + + L H G P Sbjct: 1059 RSETIRMTVQEVKPLKPVKPEKPNGKPKPLALYMDVLKHGPKDLDAIHKILTDH-PGETP 1117 Query: 1115 VHLYYQRA-DARARLRFGATWRVSPSDRLLNDLR 1147 V L A A LR G + V + +L L+ Sbjct: 1118 VQLRIMTASGEEAVLRVGRSLNVEVNAQLQQALQ 1151 >UniRef50_C1DXC6 DNA polymerase III subunit alpha n=3 Tax=Sulfurihydrogenibium RepID=C1DXC6_SULAA Length = 1172 Score = 1267 bits (3279), Expect = 0.0, Method: Composition-based stats. Identities = 449/1184 (37%), Positives = 681/1184 (57%), Gaps = 51/1184 (4%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 FVHL +H+ YS++DG K L KKA G A+ +TD N+ G V+FY G+KP Sbjct: 4 DFVHLHLHTHYSLLDGAIKIKDLAKKAVEYGYKAVGLTDHGNIFGAVEFYQEMKSVGVKP 63 Query: 65 IVGADFNVQCDLLG-----------DELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 I+G + + D+ HL + A + TG++NL L S +Y G+ Sbjct: 64 IIGMESYFTNNRFEKKGEGSDDILTDKNYHLILFAKDKTGFKNLMKLSSLSYTEGF-YYK 122 Query: 114 PIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRT 173 P ID + L + +EGLI + G + L +G + ++ F + + E+ Sbjct: 123 PRIDWELLEKYHEGLICQTACLKGFIPNLLSKGQYEEAKKYAKRLKDIFGEDLYFEIQVN 182 Query: 174 GRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLD--DPKRP 231 G ++E ++LA+ G+ VV TND +++ D AH++ A+ TL K Sbjct: 183 GLEEQEEANKGIIKLAKELGIKVVGTNDSHYLNPEDQPAHDVIKALQMKETLQSLQEKGK 242 Query: 232 RNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE---YFLPQFPTGD--- 285 + S EEM E F E L NT+EIA++CNV + E Y P++ Sbjct: 243 AFKVKGLHFTSPEEMYEKFKGYEEYLKNTMEIAEKCNVEIDTAETRGYLFPKYQIPGIEN 302 Query: 286 ---MSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFL 342 + Y K +KEGLE+RL ++ ++ EY ERL+ E+ VIN MGF YFL Sbjct: 303 PTQEDIKAYFEKLSKEGLEKRLEK---EKNLSKEKLQEYRERLQYEIDVINNMGFAEYFL 359 Query: 343 IVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDF 402 IV +FI ++K+NG+PVGPGRGS GSLVAY L IT++DPL+ L+FERFLNPER+SMPD Sbjct: 360 IVQDFINYAKNNGIPVGPGRGSAGGSLVAYCLGITEIDPLKHGLIFERFLNPERISMPDI 419 Query: 403 DVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL 462 DVDFCME R++VI +V D YG D+V+QIITF M +K VIRDV RVLG PY D+I+K+ Sbjct: 420 DVDFCMENREKVIRYVKDKYGEDSVAQIITFNFMKSKMVIRDVARVLGFPYQEADKIAKM 479 Query: 463 IPPDP----GMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIA 518 I P P +T+ + EA P ++YE D +VK L+D+ARKLEG R+ G HA G+VIA Sbjct: 480 ILPGPIQGSTLTIDENLEANPDFRKLYETDPKVKQLLDLARKLEGSARHTGIHAAGIVIA 539 Query: 519 PTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAK 578 P + ++ P+Y D++G TQF+ +E GLVK DFLGL+TLT ++ ++I +R Sbjct: 540 PGPLDEYVPVYRDKDGN-KATQFEMKTLEQLGLVKMDFLGLKTLTELDLMKKLIKERHGI 598 Query: 579 NGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALF 638 ++ +PLDD+ + +LQ +TT VFQLES+GM+DL+ RL+P F+++IA++ALF Sbjct: 599 E----INYQDLPLDDENVYKLLQSGKTTGVFQLESKGMQDLLVRLKPTVFDEIIAILALF 654 Query: 639 RPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLS 698 RPGPL SGMVD +I+RKHGR+ I YP E +K VL+ TYG+I+YQEQ+M ++ +LS Sbjct: 655 RPGPLMSGMVDEYIERKHGRKPIEYP-----FEEVKEVLKETYGLIVYQEQIMFMSNILS 709 Query: 699 GYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNK 758 G+++ AD LR+A+GKK PE MAK + F EGA + G + E K++D +EKFA Y FNK Sbjct: 710 GFSMAEADTLRKAIGKKNPETMAKMKGRFVEGAVERGFDREKVEKLWDDIEKFASYSFNK 769 Query: 759 SHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINS 818 SHS AYA ++Y T W+K +Y EF A ++ +++++ K + L+ + G+K+LPPD+N Sbjct: 770 SHSTAYAYLTYWTAWVKTYYTDEFFAVKLSTEVNDS-KFLNLLIDMENFGIKLLPPDVNK 828 Query: 819 GLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRV 878 + F++ I +G+ IK VGE + I++ R K G F ++FD C R DTK N+RV Sbjct: 829 SMAEFYIESPKNIRFGLARIKNVGESSAKEIVKEREKNGEFVDIFDFCERLDTKTANKRV 888 Query: 879 LEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSY 938 LE LI +GAFD RA L+N++ A+ + + +++ GQ +F + ++ +Y Sbjct: 889 LESLIKAGAFDFEKVDRAILLNNVDKAISSGQKARESKMAGQNSLFALTTTPVVNVKHTY 948 Query: 939 AS--CQPWPEQVVLDGERETLGLYLTGHPINQYLKEIE-RYVGGVRLKDM----HPTERG 991 + E+ L E+E LG YL+GHPIN Y KE++ + + D+ E Sbjct: 949 EDTGIKKLTEREKLKYEKEVLGFYLSGHPINAYKKELKGKVAKIGEIYDLVFSGKRPEGD 1008 Query: 992 KVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVS 1051 + AG+V ++ TK GN + + + D +G+++ F + L+ + LL+ D I+++ Sbjct: 1009 LKVKFAGVVDEIKLKKTKSGNTMMMFSFSDETGQIDCRAFPEKLEN-KDLLKDDNIVVLE 1067 Query: 1052 GQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSG 1111 G + DD + M V I+ + +G+ I + + + LL +L+Q + HR G Sbjct: 1068 GFIEIDDEQEKISMNVVNVEPIENFLKD-IKGVKIKIPKEKAMNGLLPKLQQLFKEHR-G 1125 Query: 1112 TIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSEQV 1155 V ++ + ++ + + V+ D + L + V Sbjct: 1126 DKDVVIHIYDRNFECEIQLHSDFCVNLEDEFKHKLLQYVAERDV 1169 >UniRef50_C4Z382 DNA polymerase III subunit alpha n=1 Tax=Eubacterium eligens ATCC 27750 RepID=C4Z382_EUBE2 Length = 1188 Score = 1266 bits (3277), Expect = 0.0, Method: Composition-based stats. Identities = 440/1212 (36%), Positives = 660/1212 (54%), Gaps = 84/1212 (6%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS F HL VH++YS++DG +K + K+A LGM +LAITD + G+++FY A A Sbjct: 1 MS---FTHLHVHTEYSLLDGSSKIKEITKRAKELGMDSLAITDHGVMYGVIEFYEAAKKA 57 Query: 61 GIKPIVGADFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAA 112 GIKP++G + V D+ HL +LA NNTGYQNL ++SK + G+ Sbjct: 58 GIKPVLGCEVYVAPGSRFDKGAGQSEDKYNHLVLLAENNTGYQNLMKIVSKGFTEGF-YY 116 Query: 113 GPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELI 171 P +D++ L E +EG+I S G+V R L RG + ++ F +FLEL Sbjct: 117 KPRVDKEVLREYHEGIIATSACLAGEVQRYLSRGMYETARDAALELQDIFGKGNFFLELQ 176 Query: 172 RTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRP 231 G ++ + + G+ +V TNDV + + D DAH+I + I G L D R Sbjct: 177 DHGIAEQHYVNPQLMRMHNETGIELVCTNDVHYTYADDVDAHDILLCIQTGKKLSDENRM 236 Query: 232 RNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTED- 290 R Q Y++SEEEM ELF PEA+ NT +IA+RCNV + G LP F + ++ Sbjct: 237 RYEGGQFYLKSEEEMAELFKYAPEAVENTHKIAERCNVEIEFGVTKLPAFDVPEAYGKNS 296 Query: 291 --YLVKRAKEGLEERLAFLFPD---------------------EEERLKRRPEYDERLET 327 YL EGL++R D +R + + +RL Sbjct: 297 WVYLNALCYEGLKKRYPDKTADICIEDIIEQAKASIVADRKDVVIKRAEDSNDIFQRLSY 356 Query: 328 ELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLL 387 EL VI MG+ YFLIV ++I ++K + +PVGPGRGS AGSLV+Y L IT LDP++++L+ Sbjct: 357 ELSVIYSMGYVDYFLIVWDYINYAKTHDIPVGPGRGSAAGSLVSYCLGITTLDPVKYNLV 416 Query: 388 FERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGR 447 FERFLNPERVSMPD DVDF E R +VI++V + YG++ V QIITFGTMAA+AVI+DVGR Sbjct: 417 FERFLNPERVSMPDIDVDFAPEGRQKVIDYVIEKYGKECVCQIITFGTMAARAVIKDVGR 476 Query: 448 VLGHPYGFVDRISKLIPPDPGMTLAKAF--------EAEPQLPEIYEADEEVKALIDMAR 499 V+ PY VD I+K+IP G+T+ A + + +YEADE V+ LID A+ Sbjct: 477 VMDLPYAMVDNIAKMIPQKVGVTIDSAMNGDADRDIKPNAEFKALYEADETVRDLIDKAK 536 Query: 500 KLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGL 559 +LEG+ R+A HA GV+I+ + ++ P+ + VTQF+ +E+ GL+KFDFLGL Sbjct: 537 RLEGLPRHASVHASGVLISQKDVGEYVPVAVGAD-NVKVTQFEGPTLEHLGLLKFDFLGL 595 Query: 560 RTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDL 619 R LT+I ++ + +P + IP +DK F+ + + + +FQLES GMK+ Sbjct: 596 RNLTVIQQT-----EKCEQQIDPAFSVDNIPYNDKAVFECISQGKCAGIFQLESGGMKNF 650 Query: 620 IKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEP 679 +K L+PDC ED+IA ++L+RPGP+ + +I K I+Y L+P+LEP Sbjct: 651 MKELKPDCLEDLIAGISLYRPGPMD--FIPQYIKGKENAGNITYEC-----PQLEPILEP 703 Query: 680 TYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVF--------AEGA 731 TYG ++YQEQVMQI + L+GY+ GG+D +RRAM KKK + M ++R F G Sbjct: 704 TYGCMVYQEQVMQIVRDLAGYSWGGSDNVRRAMAKKKLDVMEQERQNFVYGNEANGVPGC 763 Query: 732 EKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADM 791 KNGI+ + A KI+D + FA Y FNKSH+A YA+V+YQT +LK H+P ++MA ++++ Sbjct: 764 IKNGISEQTANKIYDEMMDFAKYAFNKSHAACYAVVAYQTAYLKVHFPVQYMAWLISSVT 823 Query: 792 DNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIE 851 D T KV + MG+ ILP D+N + F V I +G A+K +G I AIIE Sbjct: 824 DKTSKVAEYILAAREMGISILPVDVNKSVADFGVEGKN-IRFGFNAVKSMGRPTITAIIE 882 Query: 852 ARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQ 911 R G F + D R +N+R +E LI++GAFD G R +MN + +A + Sbjct: 883 ERTNNGDFHSMQDFITRM-AGVINKRTVEHLILAGAFDTFGNTRRGMMNVYERMIDSAVK 941 Query: 912 HAKAEAIGQADMFGVLAEEPEQ-IEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYL 970 K GQ +F +EE +Q +E Q + ++ +L+ E+E LG+Y+TGHP+++Y Sbjct: 942 QNKDAISGQMSLFDFASEEDKQSLEMRVPDIQEFEKEDLLEREKEVLGVYVTGHPLDEYT 1001 Query: 971 KEIERYVGGVRLKDMHPTERGK-------VITAAGLVVAARVMVTKRGNRIGICTLDDRS 1023 E+++ + E G+ T GL+ +V+ T G ++ T++D Sbjct: 1002 GMWEKHISARSTDFLIDEETGQAKLMNGSKQTIGGLISNIKVITTGSGQQMAYLTIEDFV 1061 Query: 1024 GRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARG 1083 G +EV++F +KY++ + + ++G++ D ++ A V+ D R Sbjct: 1062 GSVEVIMFPRNYEKYKRFFDTTNKVFITGRIQADADKPA-RLMADSVVSFDSV----PRR 1116 Query: 1084 LAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLL 1143 L + + + L + G V +Y R + + V + LL Sbjct: 1117 LWLRFDSLAEYETHRDELADIFKE-SDGKDTVTIYCVAEKQR--IVLPQSQCVKVTSDLL 1173 Query: 1144 NDLRGLIGSEQV 1155 L+ G + V Sbjct: 1174 YILKSKYGEKNV 1185 >UniRef50_A0PYC7 DNA polimerase III, alpha chain n=22 Tax=Bacteria RepID=A0PYC7_CLONN Length = 1167 Score = 1266 bits (3277), Expect = 0.0, Method: Composition-based stats. Identities = 431/1198 (35%), Positives = 675/1198 (56%), Gaps = 73/1198 (6%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M +FVHL H++YS++DG K L+++A LGM +LAITD + G V FY A Sbjct: 1 MKGQKFVHLHTHTEYSLLDGSGKIGGLIERAKELGMDSLAITDHGTMFGCVDFYKKAKEA 60 Query: 61 GIKPIVGADFNVQC-------DLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 GIKPI+G++ V + ++ HL +L N GY+NL ++SKA G+ Sbjct: 61 GIKPIIGSEIYVASKSMNIKRNDRENKNHHLVLLVKNEIGYKNLMKIVSKAAIDGF-YYK 119 Query: 114 PIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRT 173 P +D ++L E +EGLI LS G+V +LL G E FY++ F D ++LEL Sbjct: 120 PRVDHEYLREHSEGLIALSACLAGEVSYNLLNGTKEKAREVALFYKDIFKDGFYLELQYH 179 Query: 174 GRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRN 233 G + +EL+ +P+VATNDV +I D +H++ + I G TLDD R R Sbjct: 180 GIDKQLRVNEMLIELSRELDIPLVATNDVHYIKKEDAKSHDVLLCIQTGKTLDDTDRMRY 239 Query: 234 YSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGD-MSTEDYL 292 Y++S EEM + F+ +PEAL NTV+IA+ CN E LP FP + +Y+ Sbjct: 240 EPQNFYLKSPEEMYDTFSYVPEALENTVKIAEECNFDYVFHESKLPNFPLPESKDHFEYM 299 Query: 293 VKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSK 352 + +GL+ R + P E ERLE EL VI QMG+ YFLIV +F ++S Sbjct: 300 KELCYKGLKVRYPEITP----------ELKERLEYELGVIKQMGYVDYFLIVWDFFRFSH 349 Query: 353 DNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRD 412 + G+ GPGRGS AGSLVAY L IT +DP++++L+FERFLNPERVSMPD D DFC E+R Sbjct: 350 EKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLIFERFLNPERVSMPDIDSDFCYERRG 409 Query: 413 QVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA 472 +VI++V + YG+D VSQI+TFGTMA +A IRDVGR + + Y VDRI+K+IP G+T+ Sbjct: 410 EVIDYVVEKYGKDNVSQIVTFGTMAPRACIRDVGRAMNYSYAEVDRIAKMIPTVLGITID 469 Query: 473 KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDE 532 KA E P+L E Y+ D VK LID+AR LEG+ R+ HA GVVIA + ++ PL + Sbjct: 470 KALEMNPELKEAYDIDSRVKELIDVARDLEGLPRHTSTHAAGVVIASQPLVNYVPL--SK 527 Query: 533 EGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLD 592 + VTQF + +E GL+K DFLGLRTLT+I A++++ K+ +D+ I + Sbjct: 528 NEEAIVTQFTMTTLEELGLLKMDFLGLRTLTVIRDAIDLVKKKTGTE----IDLDKINFE 583 Query: 593 DKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFI 652 D+ + ML + +T VFQLES GM + +K L+P+ ED+IA ++L+RPGP+ + +I Sbjct: 584 DENVYAMLGKGKTVGVFQLESAGMTNFMKELKPESLEDIIAGISLYRPGPMAE--IPKYI 641 Query: 653 DRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAM 712 K+ ++I Y L+P+L TYG+++YQEQVMQI + L+GY++G +D++RRAM Sbjct: 642 KNKNNPKDIEY-----LTPKLEPILNVTYGVMVYQEQVMQIVRDLAGYSMGRSDLVRRAM 696 Query: 713 GKKKPEEMAKQRSVFA------------EGAEKNGINAELAMKIFDLVEKFAGYGFNKSH 760 KKK + M ++R F G +NGI+ E+A KI+D + FA Y FNKSH Sbjct: 697 SKKKHKVMEEERKNFIYGIEDEKGNVIVPGCLRNGISEEVANKIYDQMMDFASYAFNKSH 756 Query: 761 SAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGL 820 +AAYA+V+Y T +L +YP EFMAA++ + N++KV + +M +++LPP IN Sbjct: 757 AAAYAVVAYYTAYLVYYYPTEFMAAILNSVRGNSDKVAAYIRAAKQMEIEVLPPKINKSF 816 Query: 821 YHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLE 880 F V +G+I +G+ AIK VGE ++ I + R + G F D C + + +N+R++E Sbjct: 817 GKFTV-QNGKIRFGLSAIKNVGENVVDNIAKVREEKGEFNSFVDFCNKISSGSINKRMVE 875 Query: 881 KLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYAS 940 L+ +GAFD G +R+ ++ + + K GQ +FG +E + E Y + Sbjct: 876 SLVKAGAFDCFGIYRSQILAVYEKIIDSVVNQRKKNIDGQMSLFGSFDDEFKDTEIKYPA 935 Query: 941 CQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPT------------ 988 + ++ L E+E GLYLTGHP+ Y + ++ + Sbjct: 936 IDEFDKKSKLAMEKEMTGLYLTGHPLEDYEEVLKNRTSAKTTDIIVDESLEEELIDEVTL 995 Query: 989 ---------ERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQ 1039 + G + GL+ +T+ + + TL+D +EV++F L+++ Sbjct: 996 HIEEQNSKIKDGDKVIIGGLITNVTRKITRTNSMMAFITLEDLYSSIEVIIFPKTLEQFN 1055 Query: 1040 QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLN 1099 +++ +D I+++ G+V+ + K+ + + ++ L I + ++++ Q + Sbjct: 1056 KIIMEDEIVLIKGRVTKRE-DEQPKIICDYI---ERVFNFSSKKLYIQIENKKMLSQTKS 1111 Query: 1100 RLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSEQVEL 1157 +++ + G IP+++ + R + + ++ ++ +L ++ G E V+L Sbjct: 1112 DIKKIAILNN-GNIPIYIC--TKEERKKFLISREFWINENEDVLKIIKQKYGEENVKL 1166 >UniRef50_B8FTK4 DNA polymerase III, alpha subunit n=2 Tax=Desulfitobacterium hafniense RepID=B8FTK4_DESHD Length = 1190 Score = 1266 bits (3276), Expect = 0.0, Method: Composition-based stats. Identities = 481/1223 (39%), Positives = 678/1223 (55%), Gaps = 105/1223 (8%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL VH++YS++DG A+ LVKKA LGMP++AITD + G++ FY A AGIKPI Sbjct: 3 FVHLHVHTEYSLLDGAARIEKLVKKAVELGMPSVAITDHGVMYGIIDFYKACKKAGIKPI 62 Query: 66 VGADFNVQCDLLGDELT-------HLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDR 118 +G + V +++ HL +LA N GY+NL L+S A+ G+ P +D+ Sbjct: 63 IGCEVYVAPHRRTEKVPGRDDNNRHLVLLAENEEGYKNLIKLVSMAHIEGF-YYKPRVDK 121 Query: 119 DWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRTGRPD 177 D L + GLI LS G+V LL E YEE F +FLE+ G + Sbjct: 122 DILRRHSRGLIALSACLAGEVSEYLLNNQLETAVESALEYEEIFGKGNFFLEVQDHGLEE 181 Query: 178 EESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQ 237 ++ E+ G+P+VATNDV +++ D ++ + I G L D R S + Sbjct: 182 QQRVNTGMFEVQRRTGIPMVATNDVHYVNKEDAFIQDVLICIQTGKNLTDASRMSFSSEE 241 Query: 238 QYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMST-EDYLVKRA 296 +++SE EM LF + PE L NT IA+RC V + G+ +LP F + T + YL K+ Sbjct: 242 FFLKSEAEMNLLFGEHPEILENTARIAERCQVDFKFGDNYLPVFEVPEGYTLDTYLRKKC 301 Query: 297 KEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGV 356 E +R E ERL+ EL VI Q GF GYFLIV +F Q+++ NG+ Sbjct: 302 YEAFPLFYPN----------QRTEEKERLDYELGVIAQTGFSGYFLIVADFCQYARQNGI 351 Query: 357 PVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIE 416 VGPGRGS A S+VAY + IT ++P++ DLLFERFLNPER+SMPD D+DF + R++VI Sbjct: 352 AVGPGRGSAAASMVAYLMGITTVEPMQHDLLFERFLNPERISMPDIDIDFDPDGRERVIN 411 Query: 417 HVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFE 476 +V + YG D V QIITFGTM AKA IRDVGRVLG P VD+++K IP D GMTL KA Sbjct: 412 YVMEKYGADKVCQIITFGTMGAKAAIRDVGRVLGIPLARVDKVAKAIPSDLGMTLEKALA 471 Query: 477 AEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKH 536 P L ++ E D E+K L ++AR LEG+ R+A HA GVVIA + + PL +G Sbjct: 472 VSPDLVKLLEEDGEIKKLYEIARSLEGMPRHASTHAAGVVIAKDALDTYIPLQRTSDGGF 531 Query: 537 PVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKS 596 +TQF VE GL+K DFLGLR LTII L+ I R LD+ ++PLDDK + Sbjct: 532 TMTQFPMKTVEEVGLLKMDFLGLRNLTIIQETLKQIEGNRG----EVLDLQSLPLDDKAT 587 Query: 597 FDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKH 656 FDML +T VFQLES GM++++K L+P CFED+IA+VALFRPGP++ + FI RKH Sbjct: 588 FDMLSLGNSTGVFQLESGGMRNVLKELKPSCFEDIIAVVALFRPGPMEQ--IPEFIRRKH 645 Query: 657 GREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKK 716 G +V + H L+P+L TYG+I+YQEQVMQIA+ L+GY+LG AD+LRRAMGKKK Sbjct: 646 G------GNVSYLHPLLEPILRSTYGVIVYQEQVMQIARDLAGYSLGRADLLRRAMGKKK 699 Query: 717 PEEMAKQRSVF------------AEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764 E M ++R F GA K G+ + A +IFDL+ KFA YGFNK H+ AY Sbjct: 700 KEIMEEERQSFIYGLQSPSGEEIIPGALKLGLTEKEAAEIFDLMAKFAEYGFNKGHATAY 759 Query: 765 ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824 A++SYQT +LKA+YP EF AA+++ M + +KV + E + G++ILPPD+ F Sbjct: 760 AVISYQTAYLKANYPLEFNAALISTVMSSADKVSFYIHEARQSGIEILPPDVQYSQVGFS 819 Query: 825 VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884 + G I +G+GAI+ VG +E IIEAR + G F L+D C R D K LN+RVLE L+ Sbjct: 820 IEGRG-IRFGLGAIRNVGVNVVEKIIEARQE-GLFDSLYDFCIRVDAKVLNKRVLESLLK 877 Query: 885 SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944 +GAF L RA + +L L+ A Q + + GQ +F + E IE + + Sbjct: 878 AGAF-SLLCKRAQGLLALDSILEIAQQRQRDKESGQISLFDFGDDLDEGIE--LPDVEEY 934 Query: 945 PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004 + +L E+E LGLYL+GHP+ L +++ V L + E K + G+V R Sbjct: 935 SPRELLTMEKEYLGLYLSGHPLESVLPKLKNAVSEDILTCLEGDEEKK-VILGGIVTGYR 993 Query: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLK 1064 VTKRG + L+D +G ++V++F + + L +D++++V G+ + D K Sbjct: 994 TTVTKRGEMMASFVLEDLTGTIDVLVFPRIFAQSAR-LTEDQVVVVEGRYNIRD--DERK 1050 Query: 1065 MTAREVMDIDEAREK--------------------------------------------- 1079 + A + D++ E+ Sbjct: 1051 IFAERITDLENGAERTKPIGYKDYEKTQTREKAQTRTQPPTQPSTQSPPKLSAVPSAKPG 1110 Query: 1080 --YARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVS 1137 AR L + LL L H SGT PV Y+++ + ++ V+ Sbjct: 1111 AVPARKLYLRFPYEGTP--LLEEALPIL-RHYSGTHPVLFYFEQD--KKLIQGNRELWVN 1165 Query: 1138 PSDRLLNDLRGLIGSEQVELEFD 1160 + L+ L ++G V + + Sbjct: 1166 DLEELVQALSNILGESNVVWKVN 1188 >UniRef50_D1C3B9 DNA polymerase III, alpha subunit n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C3B9_SPHTD Length = 1167 Score = 1265 bits (3275), Expect = 0.0, Method: Composition-based stats. Identities = 439/1177 (37%), Positives = 637/1177 (54%), Gaps = 54/1177 (4%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M+ F HL +H+++S++DG+ + + +A GM +AITD + G++ +Y A Sbjct: 1 MTARPFAHLHLHTEFSLLDGMGRIKDYMARAREFGMEHIAITDHGVMYGVIDWYKAARAH 60 Query: 61 GIKPIVGADFNVQCDLLGDE---LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIID 117 + PI+G + + + D HL +LA N GY+NL L S+A G+ P +D Sbjct: 61 DLHPILGIEAYLAPGSIEDREKQSYHLLLLAENERGYRNLLRLASRASLEGF-YYKPRVD 119 Query: 118 RDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRTGRP 176 D L L +G+I S G V + L+G +E F PD +++E+ G Sbjct: 120 LDMLNSLRDGIICTSACLGGPVANNFLQGRDEEAVRLAGILKEMFGPDHFYIEIQDHGIE 179 Query: 177 DEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSP 236 + +ELA LP+VATNDV ++D SD E+ V I TL DPKR R S Sbjct: 180 GQRQTNPQLIELARKLDLPLVATNDVHYVDKSDAPLQELLVCIQTNTTLHDPKRLRMESD 239 Query: 237 QQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKR 295 Q Y +S EEM LF ++PEAL NT+ IA+RCNV + G LP + + +YL + Sbjct: 240 QLYFKSPEEMWRLFGEVPEALENTIRIAERCNVDLEFGRLHLPDPGIPEGMTPHEYLCQL 299 Query: 296 AKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNG 355 +G+ R + E RLE EL VI + GF Y LIV +F ++++ Sbjct: 300 CWDGVRRRYPEV----------TEEVRRRLEYELDVIQETGFSSYMLIVRDFAEFARQRR 349 Query: 356 VPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVI 415 + G RGS A S+V Y L ITD+DPL L+FERFLN ER MPD D+DF +R +VI Sbjct: 350 ISFGV-RGSAAASIVLYTLGITDIDPLANRLVFERFLNRERREMPDIDMDFADNRRAEVI 408 Query: 416 EHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAF 475 ++VA YG D V+QIITFGTM AKA IRD GR +G Y VDRI++LIP +TL KA Sbjct: 409 DYVASKYGHDRVAQIITFGTMGAKAAIRDTGRAMGWAYNDVDRIARLIPSTLNITLDKAL 468 Query: 476 EAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLY---CDE 532 + P+L ++YE D + LID A++LEG++R+AG HA GVVIA + + PL E Sbjct: 469 QESPELRQLYETDPACRELIDNAKRLEGISRHAGTHAAGVVIAADPLVEHLPLQRPARAE 528 Query: 533 EGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLD 592 EG P TQF V GL+K DFLGL LTI+ A+E+I + +D IP Sbjct: 529 EGALPTTQFPMETVAEIGLLKMDFLGLANLTILGEAVELIRQTTGVE----IDPKKIPDG 584 Query: 593 DKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFI 652 D+K++ ML + ET VFQLES GM+ I+ L+P ++ A+VAL+RPGP+Q + + Sbjct: 585 DEKTYAMLSQGETFGVFQLESAGMRRYIRELRPSSIAELAAMVALYRPGPMQH--IPTYC 642 Query: 653 DRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAM 712 KHG E I YP H L +L+ TYG+I+YQ+QV+ IA+ +GYTLG AD++R+AM Sbjct: 643 RAKHGLEPIRYP-----HPDLAEILDETYGVIVYQDQVLLIARKFAGYTLGEADIMRKAM 697 Query: 713 GKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTL 772 GKK PE M +R F GA++ G +AE A +F+L+E FAGY FNK+H+ YA +SYQT Sbjct: 698 GKKIPEVMKAERERFLRGAQEKGYSAEDAQNVFNLIEPFAGYAFNKAHAVCYATISYQTS 757 Query: 773 WLKAHYPAEFMAAVMTADMDN----TEKVVGLVDECWRMGLKILPPDINSGLYHFHVN-- 826 +LKA+YPAE+M AV+ + T++V V EC ++G+ +LPPDIN F + Sbjct: 758 YLKANYPAEYMTAVLRGAPSHPSGATQRVAAAVAECQKLGIPVLPPDINKSGVDFEIEIL 817 Query: 827 --DDGEIVYGIGAIKGVGEGPIEAIIEARN--KGGYFRELFDLCARTDTKKLNRRVLEKL 882 I +G+ +K VGE +E+I+ AR G F C D +NRRV E L Sbjct: 818 EDGTKAIRFGLAIVKNVGEAAVESIVAARKSLPGERFESFEQFCDTVDWTVVNRRVAESL 877 Query: 883 IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYA-SC 941 I GA D LG RA L+ L A+ AA +A GQ D+F + + Sbjct: 878 IKCGALDSLG-DRATLLAVLEQAISAAQSRQRAAKRGQIDLFSAAPVAAPALALAMPDDV 936 Query: 942 QPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVV 1001 P +L E+E LGLYL+ HP+N + + R G VRL ++ G+ I A ++ Sbjct: 937 PEIPRATLLAWEKELLGLYLSSHPLNDLVP-LIRDGGYVRLAEIDEETVGQQIEAIVMIT 995 Query: 1002 AARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSG 1061 R + TK + IC L+D++G +E+++F D ++ + L D I+ V+ +V D + Sbjct: 996 GMRKLTTKTNRVMAICQLEDQTGAIEMVVFPDLYEQAGEHLVVDSIVRVAARV--DQRND 1053 Query: 1062 GLKMTAREV--MDIDEAREKYARGLAISLTDRQ---IDDQLLNRLRQSLEPHRSGTIPVH 1116 +++ A V + I+E + R + + L D D + +NR+R+ + G V Sbjct: 1054 RIQLVADRVGPVTIEEPKPVVVREVHVRLPDTGNVTADVETMNRVRELFDQF-PGDDGVI 1112 Query: 1117 LYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSE 1153 L+ +R + + L ++G Sbjct: 1113 LHVPARGRTVLMRAS--LSIDWCPDVERALEEMLGPG 1147 >UniRef50_Q8K9S3 DNA polymerase III subunit alpha n=4 Tax=Enterobacteriaceae RepID=DPO3A_BUCAP Length = 1161 Score = 1262 bits (3266), Expect = 0.0, Method: Composition-based stats. Identities = 646/1162 (55%), Positives = 877/1162 (75%), Gaps = 5/1162 (0%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M+ FVHL VHSDYS++DGL+K L+KK+ LGM AL+ITDF NL G +KFY A H Sbjct: 1 MNLEEFVHLHVHSDYSIVDGLSKPEDLIKKSVNLGMKALSITDFNNLYGAIKFYNAAHKW 60 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPI-IDRD 119 G+KPI+G +L+ +ELT LT+LA N GY+NL LLIS+AY++GY + I++ Sbjct: 61 GLKPIIGVTVKFFSELIKNELTELTLLATNQDGYKNLILLISRAYKKGYFCEKYVTIEKK 120 Query: 120 WLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEE 179 WL ELN GLILLSGG G++G++LLRG ++L+ +C+ FYE++F Y+LELIRT R +EE Sbjct: 121 WLSELNNGLILLSGGCQGEIGKTLLRGQTSLISDCLHFYEKYFSGFYYLELIRTYRENEE 180 Query: 180 SYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQY 239 YL AV+L+ ++ +PVVATNDV F++ DF H+IR+AI++G L + K NYS Q+ Sbjct: 181 KYLSLAVDLSYSQNIPVVATNDVCFLNKEDFKIHKIRIAINEGVRLKESKIQNNYSKHQF 240 Query: 240 MRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKEG 299 +++E+EMC LF+DIPEA+ N+VEI+KRCNV ++ G+YFLPQF T +S E+YL++++ +G Sbjct: 241 LKTEKEMCFLFSDIPEAIINSVEISKRCNVFIKSGQYFLPQFNTRKISIENYLIQKSNKG 300 Query: 300 LEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVG 359 L++RL F ++ + +Y RL+TEL +IN+MGFP YFLIVMEFIQW+KDN +PVG Sbjct: 301 LKKRLESNFKKVDKEIFL--KYKNRLDTELGIINKMGFPSYFLIVMEFIQWAKDNNIPVG 358 Query: 360 PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVA 419 PGRGSGAGSLVAY L IT++DPL FDLLFERFLNPER+S+PDFD+DFCMEKRD+VIEHV Sbjct: 359 PGRGSGAGSLVAYVLNITEVDPLFFDLLFERFLNPERISLPDFDIDFCMEKRDRVIEHVV 418 Query: 420 DMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEP 479 YGR++V+QIITFGTM AKAVIRDVGRVLG+PYGF++ +SKL+P DPG+TL AF Sbjct: 419 HTYGRESVAQIITFGTMTAKAVIRDVGRVLGYPYGFINNLSKLVPLDPGITLKDAFSKNS 478 Query: 480 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 539 +L +Y++DE+++ LID+++KLEGV RN GKHAGGVVI+P+KITDF P+YCDE+G +PVT Sbjct: 479 ELYTLYKSDEDIQNLIDVSKKLEGVNRNVGKHAGGVVISPSKITDFCPVYCDEKGNNPVT 538 Query: 540 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 599 QFDK+D+EY GL+KFDFLGLRTLTIIN A+ MINK + + ++I +IPL++ K F + Sbjct: 539 QFDKNDIEYVGLLKFDFLGLRTLTIINCAVNMINKNLLLSNKKTININSIPLNESKCFLL 598 Query: 600 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 659 L++ ETT +FQLES GMKDL+KRLQPDCFED+IAL+ALFRPGPLQSGMVDNFI+RKHG E Sbjct: 599 LKKCETTGIFQLESYGMKDLVKRLQPDCFEDIIALIALFRPGPLQSGMVDNFINRKHGYE 658 Query: 660 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 719 EISYPD +WQH LKPVLE TYGIILYQEQVMQIAQ+L+GYTLG AD+LRRAM KK ++ Sbjct: 659 EISYPDHKWQHILLKPVLESTYGIILYQEQVMQIAQILAGYTLGKADILRRAMSKKNIKD 718 Query: 720 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 779 MA+QRS+F EGA+KNGIN +LA+KIFDL+EKFAGYGFNKSHS AYALVSYQTLWLKAHYP Sbjct: 719 MAEQRSIFIEGAQKNGINRKLAIKIFDLLEKFAGYGFNKSHSVAYALVSYQTLWLKAHYP 778 Query: 780 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 839 +EFMA+ MT+D+DNT+K+V LV+E +MG+KI+PP+IN Y F+V+ IVYG+GA+K Sbjct: 779 SEFMASAMTSDIDNTDKIVMLVNESIQMGIKIIPPNINLSKYEFYVDHTKNIVYGLGAVK 838 Query: 840 GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 899 G+G PI +++ R K G F +LFDLC RTD K+ R+VLEKLIMSG+ D +R L+ Sbjct: 839 GIGRNPILNLVQEREKNGLFSDLFDLCMRTDPNKITRKVLEKLIMSGSCDCFNKNRNYLL 898 Query: 900 NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQV-VLDGERETLG 958 + + DA+KA+ +H K + Q +FG EE ++++ + ++ L+ E + LG Sbjct: 899 SLIEDAIKASKEHFKIKKFQQESLFGSFKEELNILKKNNNLLNSFSDEEKKLENEHKVLG 958 Query: 959 LYLTGHPINQYLKEIERYVGGVRLKDMHP-TERGKVITAAGLVVAARVMVTKRGNRIGIC 1017 LYLTGHPI++Y +E++ Y+ + K I AG+VV+ + VTK NRI I Sbjct: 959 LYLTGHPIDRYAEELKYYLNNSTFSKLKLFNHTKKKIMVAGIVVSIKTKVTKNKNRIVIL 1018 Query: 1018 TLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077 LDD +G LEV++F L+ ++L++ ++ILIVSG ++ + S LKMTA ++M+++ AR Sbjct: 1019 ILDDSTGLLEVVIFKRLLNISEKLIQLNKILIVSGFLNTNFISKNLKMTAYDIMNLNLAR 1078 Query: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVS 1137 EKY L I LT++Q D L ++ Q + +G +PV+++ ++ D + + W ++ Sbjct: 1079 EKYLDKLTIVLTEKQRDKCFLKKIYQFFQNQTTGIVPVYIFCKKKDLDSEYKLIKKWLIT 1138 Query: 1138 PSDRLLNDLRGLIGSEQVELEF 1159 S++LL +L ++++++ Sbjct: 1139 ISNKLLVELDIFSKENKMQIKY 1160 >UniRef50_B9XPL1 DNA polymerase III, alpha subunit n=1 Tax=bacterium Ellin514 RepID=B9XPL1_9BACT Length = 1224 Score = 1262 bits (3266), Expect = 0.0, Method: Composition-based stats. Identities = 467/1220 (38%), Positives = 681/1220 (55%), Gaps = 78/1220 (6%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS FVHL +H++YS++DG + L+ KA L P+LAITD L G + FY A Sbjct: 1 MSHADFVHLHLHTEYSLLDGACRLDRLMDKAHELKFPSLAITDHGVLFGAIDFYKAARDK 60 Query: 61 GIKPIVGADFNVQCDLLGDE---------LTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111 GIKPI+G + V ++ HL +LA + GY+NL L++ A+ GY Sbjct: 61 GIKPIIGCEVYVAPHSRTEKKSANGGRDVYNHLVLLAKDEIGYKNLIKLVTAAHLEGY-Y 119 Query: 112 AGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLEL 170 P ID++ L EGLI LSG ++ ++++ N + + ++++ + ++LEL Sbjct: 120 YKPRIDKEILAANKEGLIALSGCLASEIPEAIMKDNLQKARDGIDWFKQTLGAENFYLEL 179 Query: 171 IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230 G P++ + A+ GL +VA+NDV +I+ AH+ + I L D KR Sbjct: 180 QNHGIPEQAKVNKHLIPWAKEFGLKLVASNDVHYIEKGHSHAHDCLICIGTQTQLADTKR 239 Query: 231 PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTED 290 + Q Y+RS EEM FA+IPEA+ NT+E+A++CN+ V G+ P F + T + Sbjct: 240 MKYVEEQFYLRSAEEMKARFAEIPEAVQNTLEVAEKCNLEVEFGKLHYPVFDPPEAYTRE 299 Query: 291 -YLVKRAKEGLEERL--------------------------------------------- 304 YL K EGL R Sbjct: 300 GYLRKLLAEGLHRRYTMHVRAEGQEFIVEGIDDARRLPTYKVQSPDAKVQGNGNGHHVDE 359 Query: 305 AFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGS 364 ++ + +RL+ EL+VI + GF YFLIV +F+++ ++ G+ RGS Sbjct: 360 PITNLEDPAVKEAVKAVIDRLQMELKVIEKTGFISYFLIVGDFVRYGREQGIS-CVARGS 418 Query: 365 GAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGR 424 AGSLV Y L+I ++DP+ + LLFERFLNPERV+ PD D+DF ++R VIE+V YG Sbjct: 419 AAGSLVTYLLEIANVDPIRYALLFERFLNPERVNPPDIDIDFADDRRADVIEYVRKKYGN 478 Query: 425 DAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEI 484 +V+QI+TFGTM AK+V+RDVGRV+G YG DR++K+IP + M L KA + P L Sbjct: 479 SSVAQIVTFGTMGAKSVLRDVGRVMGLGYGDCDRLAKMIPNELKMDLHKALKQSPDLKAA 538 Query: 485 YEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKS 544 Y+ +E + LID A LE +TRN+ HA GVVI + + PL DEEG VTQ+ + Sbjct: 539 YDTEEVTRELIDTAFALEDITRNSSVHAAGVVIGDQPLVNLLPLKQDEEG-TLVTQYAMN 597 Query: 545 DVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSE 604 V GL+K DFLGL+TLT+I EMI + + + I +PLDDKK++D+L + Sbjct: 598 PVGELGLLKMDFLGLKTLTVIRNTCEMIKATKGVD----VPIDNLPLDDKKTYDLLNNAR 653 Query: 605 TTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYP 664 T VFQLES GM+DL ++ Q E + ALVAL+RPGP+ + FI R+HG +I Y Sbjct: 654 TLGVFQLESGGMRDLCRKFQIGSVEHITALVALYRPGPMDL--IPEFIKRRHGEVKIEY- 710 Query: 665 DVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQR 724 +H L+ + TYGI++YQEQVMQ AQ L+GYTLGGAD+LRRAMGKKK EEM KQR Sbjct: 711 ----EHPLLEKICSETYGIMVYQEQVMQAAQYLAGYTLGGADLLRRAMGKKKVEEMQKQR 766 Query: 725 SVFAEGAEK-NGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFM 783 F +GA N I A A +IFDL+EKFAGYGFNKSH+AAYA+V+YQT +LKA+YP EF+ Sbjct: 767 ETFVKGAASINKIPAAKANQIFDLLEKFAGYGFNKSHAAAYAIVAYQTAYLKANYPVEFL 826 Query: 784 AAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGE-IVYGIGAIKGVG 842 +A+MT DM +T K+ + E MG+++LPPD+N F +GE I +G+ AIKGVG Sbjct: 827 SAMMTNDMADTSKLTEFIAEARSMGIEVLPPDVNESQVAFAPARNGEVIRFGLAAIKGVG 886 Query: 843 EGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSL 902 E +++I++AR GG F L D+C R D + +NR+VLE LI SGA D R+ + + Sbjct: 887 EIAVQSILDARKAGGEFTSLGDMCQRVDIRTVNRKVLEALIKSGACDAFKETRSTMYAHI 946 Query: 903 GDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLT 962 AL A + GQ+ MF +L E E + A WPE +L E+E LG Y+T Sbjct: 947 DKALTRAAGIIQDRQRGQSSMFDMLEENREDKPEVVAKLPEWPEHELLQAEKELLGFYVT 1006 Query: 963 GHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKR-GNRIGICTLDD 1021 GHPIN Y+ +E+Y ++ ++ E + GLV + V+K+ + TL+D Sbjct: 1007 GHPINPYVPLLEKYA-LTKIAELPKLENRALTRIGGLVSVVQQGVSKKSNKPYAMVTLED 1065 Query: 1022 RSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYA 1081 G ++++ + DKY+ L + L+V G+VS K+ +E+M +++A KY Sbjct: 1066 LDGTVQLLCMNENYDKYRHLFVVNNALLVIGEVSA--GEDKPKIFPQEIMLLEDAPRKYT 1123 Query: 1082 RGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADAR-ARLRFGATWRVSPSD 1140 + + L +D+ + L + H G P+ L +++A + + V+PS Sbjct: 1124 KQVFFRLDAAHLDENKIQSLFELATAH-PGRCPLFLRFRQATGEYVYIETHEKYSVTPSL 1182 Query: 1141 RLLNDLRGLIGSEQVELEFD 1160 +L G + ++ D Sbjct: 1183 KLEKAAAEQFGDQTYFVKVD 1202 >UniRef50_B2TQR7 DNA polymerase III subunit alpha n=23 Tax=Clostridia RepID=B2TQR7_CLOBB Length = 1203 Score = 1261 bits (3264), Expect = 0.0, Method: Composition-based stats. Identities = 441/1208 (36%), Positives = 678/1208 (56%), Gaps = 77/1208 (6%) Query: 3 EPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGI 62 + FVHL +H+ YS++DG K ++ K LGM ++AITD L GLV FY A GI Sbjct: 17 KRDFVHLHLHTGYSLLDGSGKIKEIMAKTKELGMNSIAITDHGVLYGLVDFYKAALEYGI 76 Query: 63 KPIVGADFNVQCDLLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPI 115 KPI+G + V + + HL +L N GY+NL ++S A G+ P Sbjct: 77 KPILGCEVYVAGKSMKIKQPDKDNSTYHLVLLVKNEIGYRNLMKIVSTASIEGF-YYKPR 135 Query: 116 IDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGR 175 +D ++L +EGLI LS G+V L+GN E Y+E F + ++LE+ G Sbjct: 136 VDHEYLKAHSEGLIALSACLGGEVQSYELKGNYEKAKETAILYKEIFKEDFYLEIQNHGM 195 Query: 176 PDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYS 235 ++ ++L++ G+P+VATNDV +I + +H+I + I G T+DD R R S Sbjct: 196 DEQRKVNEENIKLSKELGIPLVATNDVHYIKKDGYKSHDILMCIQTGKTVDDVNRRRYPS 255 Query: 236 PQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTG-DMSTEDYLVK 294 Q Y++S EEM E+F+ IPEAL NTV+I+K+CN + E LP+FP +YL Sbjct: 256 DQFYLKSPEEMWEMFSYIPEALENTVKISKQCNYEYKFHESKLPKFPLPQGEEPYNYLKN 315 Query: 295 RAKEGLEERLAF------------LFPDEEERLKRRPEYDERLETELQVINQMGFPGYFL 342 GL ER D + + +RLE ELQ+I QMG+ YFL Sbjct: 316 TCYMGLIERYEEFKELRDKDLDYDELDDLKSKNDSAKNLIDRLEYELQIIRQMGYIDYFL 375 Query: 343 IVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDF 402 IV +FI+++ DNG+P GPGRGS AGS++AY L IT +DP+++ L+FERFLNPERVSMPD Sbjct: 376 IVWDFIKFANDNGIPTGPGRGSAAGSIIAYTLGITKIDPIKYSLIFERFLNPERVSMPDI 435 Query: 403 DVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL 462 D DFC E+R +VI++V + YG D VSQIITFGTMAA+A IRDVGR + + Y VD+I K+ Sbjct: 436 DSDFCYERRQEVIDYVVEKYGEDNVSQIITFGTMAARACIRDVGRAMNYSYSEVDKICKM 495 Query: 463 IPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 IP G+T+ KA + P+L EIY+ DE VK+LIDM++ LEG+ R++ HA GVVIA T + Sbjct: 496 IPTMLGITIEKALDFNPELKEIYDKDERVKSLIDMSKDLEGLPRHSSTHAAGVVIASTPL 555 Query: 523 TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP 582 + PL + VTQF + +E GL+K DFLGLRTLT++N AL++I + R Sbjct: 556 VQYVPLQK--NDEMIVTQFGMTTLEELGLLKMDFLGLRTLTVMNEALKIIKENR----NI 609 Query: 583 PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 +D+ I +DK+ + M+ +T VFQLES GM +K L+PD ED+IA ++L+RPGP Sbjct: 610 DIDLDKIDFEDKEVYKMIGEGKTAGVFQLESPGMVSFMKELKPDSLEDIIAGISLYRPGP 669 Query: 643 LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 + + +I+ K E++ Y L+ +L+ TYG+++YQEQVM+I + L+GY++ Sbjct: 670 MAE--IPRYIECKRNPEKVKYDA-----PELEEILDVTYGVMVYQEQVMEIVRKLAGYSM 722 Query: 703 GGADMLRRAMGKKKPEEMAKQRSVFAE-----------GAEKNGINAELAMKIFDLVEKF 751 G +DM+RRAM KKK + M ++R F G +NGI+ E A KIFD + F Sbjct: 723 GRSDMVRRAMSKKKHKVMEEERKNFIHGIIENDEVVVPGCIRNGISEEAANKIFDNMMDF 782 Query: 752 AGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKI 811 A Y FNKSH+AAYA+V YQT +L +YP E +AA++ + M ++EKVV + + +G+++ Sbjct: 783 ASYAFNKSHAAAYAVVGYQTAYLMKYYPVEMIAAMLNSFMGSSEKVVYYISKAEELGIQV 842 Query: 812 LPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDT 871 LPPDIN F V + I +G+ AIK VG I ++++ R G F LFD ++ D Sbjct: 843 LPPDINESFAKFAVKGE-TIRFGLAAIKNVGMNLINSVVKTRENKGKFDSLFDFISKIDL 901 Query: 872 KKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEP 931 +N+R +E LI SG FD +R+ L+ + + K GQ +F +++ Sbjct: 902 SAINKRTIESLIKSGTFDSFKIYRSKLLAVYEKMVDSISSDRKRNIDGQISLFA--SDDI 959 Query: 932 EQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVG------------- 978 E Y + + ++ +L E+E GLY++GHP++ Y + ++ Sbjct: 960 YVPEIEYPNINEFDKRSLLTMEKEMTGLYISGHPLDDYAQSLKFQTSNEIGKIFSHHELL 1019 Query: 979 -----GVRLKDMHPTERG----KVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVM 1029 L D+ E G + G++ VT+ + L+D +G +EV+ Sbjct: 1020 DDTLEIQMLDDVINNESGINDNDRVILGGILTQVNKKVTRNNTIMAFLQLEDLTGTIEVI 1079 Query: 1030 LFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLT 1089 +F LD+ ++L +D ++I+ G++S K+ + +++ + + + + Sbjct: 1080 VFPKVLDRVRELCNEDDLVIIKGRISL-KTDELPKLICESIEPLEKIN---SSKIYLRVQ 1135 Query: 1090 DRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGL 1149 + +L L++ ++ ++ G P++++ D R + R + ++ L LR Sbjct: 1136 NTIKAKELSLNLKELIKDYK-GDTPIYIF--ATDQRQQFRVPRDRWLDINEESLGVLRKF 1192 Query: 1150 IGSEQVEL 1157 IG E V++ Sbjct: 1193 IGEENVKV 1200 >UniRef50_D2R3M9 DNA polymerase III, alpha subunit n=4 Tax=Planctomycetaceae RepID=D2R3M9_9PLAN Length = 1192 Score = 1260 bits (3260), Expect = 0.0, Method: Composition-based stats. Identities = 420/1184 (35%), Positives = 657/1184 (55%), Gaps = 43/1184 (3%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS+ +FVHL HS YS++DG + L+K+A GM ALA+TD NL G ++FY Sbjct: 1 MSDRKFVHLHCHSHYSLLDGASSVPKLLKRAKEHGMSALALTDHGNLHGALEFYNKAKAL 60 Query: 61 GIKPIVGADFNVQCDLLGDEL---------THLTVLAANNTGYQNLTLLISKAYQRGYGA 111 GI PI+G + + ++ HLT+LA N G++NL L S A G+ Sbjct: 61 GINPIIGYEAYIAPGSRFEKKDAANSKEASYHLTLLAQNRQGFKNLIKLASAASLEGF-Y 119 Query: 112 AGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGN-----SALVDECVAFYEEHFPDRY 166 P ID++ L +EG+I LSG + ++LRG+ E ++ + F DRY Sbjct: 120 YKPRIDKEILQAHSEGIICLSGCVSSEFSNAVLRGHGGDKELKDAQEIAGWFHKVFGDRY 179 Query: 167 FLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLD 226 FLE++ G + L AV++A+ GLP+VAT+D + + D +A ++ + ++ G Sbjct: 180 FLEIMNNGIDIQRFQLEGAVDVAKKMGLPLVATSDAHYAYAEDAEAQDVLLCVNTGKFRT 239 Query: 227 DPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFP-TGD 285 D R + + Y+RS EEM E F + +A+A + EIA ++ + LG+ P +P + Sbjct: 240 DTNRMKMENGSFYLRSAEEMYEHFHGLEDAVARSQEIADSVHIDLELGKRHFPVYPIPPE 299 Query: 286 MSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVM 345 + EDYL + +GL+ER A + + RLE EL VIN++GFP YFLIV Sbjct: 300 KTAEDYLRELCVQGLKERYAGDE-EMLPGGELSEVVVARLERELNVINKLGFPNYFLIVW 358 Query: 346 EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405 +F++ +++ VP RGSG G+LV +AL ++ + P+++DLLFERFL+ R PD D+D Sbjct: 359 DFVRHAREQDVP-ATARGSGVGALVCFALYLSHVCPIKYDLLFERFLDLNRKEAPDIDID 417 Query: 406 FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465 FC ++R +I +V D YG V+QI TFGT+AA+A I+DVGRVLG P V++++ ++P Sbjct: 418 FCKDRRGDIIRYVKDKYGESNVAQIGTFGTLAARAAIKDVGRVLGIPMERVNKVTAMVPD 477 Query: 466 DPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDF 525 + + L+ A E +L +Y D +V+ ++D+A ++EG+ RN G HA VVIA +T++ Sbjct: 478 ELHIHLSDALEKSDELKAVYNGDPDVREMLDLAMRIEGLARNVGTHAAAVVIADKPLTEY 537 Query: 526 APLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLD 585 PL +TQ+ DVE AGL+K DFLGLR LTI++ A+E+I + K +D Sbjct: 538 VPLGRVGGKSDIITQWSMGDVEAAGLLKMDFLGLRNLTILSKAVEIIQQTTGKR----VD 593 Query: 586 IAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQS 645 PLDDK++F +LQR ET +FQLES G++DL+++++PD F D+IA AL+RPGPL+ Sbjct: 594 PYKFPLDDKRTFALLQRGETKGIFQLESGGIRDLLQKMKPDHFRDIIATNALYRPGPLEG 653 Query: 646 GMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGA 705 GMV +++ KHGR++ Y H + +L T G+++YQEQVM+I L G L + Sbjct: 654 GMVADYVAVKHGRKQAEY-----IHPVCEKILSETNGVMVYQEQVMRILNELGGIELAAS 708 Query: 706 DMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYA 765 + +A+ KKK + + K + F +GA + GI + A ++L+ KFAGYGFNKSHS AYA Sbjct: 709 YTVIKAISKKKEDLINKNKVQFLKGAVEKGITEKQADDFWNLIIKFAGYGFNKSHSTAYA 768 Query: 766 LVSYQTLWLKAHYPAEFMAAVMTADMDN-----TEKVVGLVDECWRMGLKILPPDINSGL 820 L++Y T +LKAHYP EFMAA+++ D+ + +V +++C RMG+ + PP++N Sbjct: 769 LIAYMTAYLKAHYPVEFMAALLSGDIQGRNFKTKDSLVEHLEDCTRMGITVQPPNVNESN 828 Query: 821 YHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLE 880 F V DG+I++G+ AIKG G E+I+ AR KGG FR+LFD C R D ++ +E Sbjct: 829 VDFAV-KDGKILFGLSAIKGCGGSAGESIVAARTKGGPFRDLFDFCERVDATGSSKGTIE 887 Query: 881 KLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQS--Y 938 LI +GAFD G R+ + A+++ A GQ ++FG EE +S Sbjct: 888 TLIKAGAFDCFGARRSQQFAIVERAIQSGQSVAADRKSGQKNLFGAFEEEEPSKAKSTTL 947 Query: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998 + + E+E LG YL+ HP++++ + + Y D+ P + G Sbjct: 948 PDVPELASKEMATQEKEVLGFYLSSHPLDEHKRTLATYRSHTTA-DIGPIPDRSEVILGG 1006 Query: 999 LVVAARVMVTKRGNR-----IGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQ 1053 +V A ++ TK + L+D G + +L+ D + Q+++ D IL+V G Sbjct: 1007 MVSAIKLSNTKNPKPGAPSRYVMFDLEDTEGTIRCILWPDGYAEMGQMVQPDAILMVRGA 1066 Query: 1054 VSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTI 1113 + + E+M +D+ +Y GL + + R D L ++R+ G Sbjct: 1067 IDRR-GGEEANLVINELMPLDQLSTRYTSGLVVRVDTRDQPDDCLLKIREI-TRGYPGDK 1124 Query: 1114 PVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSEQVEL 1157 + L DA ++ + L L L+G +L Sbjct: 1125 ELQLVLVLDDASRVHMRAHKMKIDVTPELRTRLDDLLGPGNFQL 1168 >UniRef50_A0LCM6 DNA polymerase III, alpha subunit n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LCM6_MAGSM Length = 1195 Score = 1257 bits (3254), Expect = 0.0, Method: Composition-based stats. Identities = 543/1193 (45%), Positives = 734/1193 (61%), Gaps = 50/1193 (4%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL +H+ YS++ + +++A +L MPALA+TD NL G ++FY AGIKP+ Sbjct: 5 FVHLHLHTGYSLLTSTVRLKQAIERAQSLQMPALALTDQGNLFGAIQFYSGCLKAGIKPL 64 Query: 66 VGADFNVQCDLLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDR 118 +GA + D E + +L N G++NL LI+K + G P ID Sbjct: 65 LGAQLYLVPDHTNKEERVDKEVRDQVILLCRNEEGWKNLMRLIAKGHLDGSHGL-PRIDL 123 Query: 119 DWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPD-----RYFLELIRT 173 L + + GL+ LS G G VGR L + A + A F D + LEL R Sbjct: 124 PLLKQHSAGLLALSAGAKGAVGRLLAQERPAEAEAAAAELAAIFGDDGQMPNFHLELQRH 183 Query: 174 GRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRN 233 G P EE + V LA+ LP+VA+ D+ ++D D +A + + TL + RPR Sbjct: 184 GEPGEERLIQQTVVLAQKLNLPIVASCDIHYMDPEDANARDALYCVGAVRTLYEENRPRL 243 Query: 234 YSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTED-YL 292 S + + EM E FAD+PEAL NT IA RCN+ ++LG LP F T + + Sbjct: 244 -SDRYAFATPAEMAERFADLPEALENTRRIAMRCNLQLKLGTPMLPDFALPPGQTLEGEM 302 Query: 293 VKRAKEGLEERLAFLFPDE---EERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQ 349 +++ GLEERL+ E + R Y +RL EL +INQMGFPGYFLIV +FI+ Sbjct: 303 RTQSEAGLEERLSKYVLPRFPAAEHAELRQRYHDRLTYELGIINQMGFPGYFLIVSDFIK 362 Query: 350 WSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCME 409 W KD+ +PVGPGRGSGAGSLVA++L ITDLDP+ + LLFERFLNPERVSMPDFDVDFCM+ Sbjct: 363 WGKDHHIPVGPGRGSGAGSLVAWSLSITDLDPIRYTLLFERFLNPERVSMPDFDVDFCMD 422 Query: 410 KRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGM 469 +R++VI +V YG D V+QIITFGTM AKAVIRDVGRVL PYG VD+I+KL+P G+ Sbjct: 423 RREEVIGYVQQKYGEDRVAQIITFGTMQAKAVIRDVGRVLEFPYGRVDKIAKLVPNVLGI 482 Query: 470 TLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLY 529 TL +A E EP+L ++ E +EEV LI++A LEG R+ G HA GVVI+ +TD PLY Sbjct: 483 TLKEALEQEPRLRDMMEDEEEVGHLINLALALEGSPRSCGTHAAGVVISNGPLTDTVPLY 542 Query: 530 CDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP-----PL 584 D PVTQF+ DVE AGLVKFDFLGL+TLT+I+ L+++N RRA+ GE P+ Sbjct: 543 RDPRSSMPVTQFNMGDVEKAGLVKFDFLGLKTLTVIDNTLKIVNARRAQEGERAEDRVPI 602 Query: 585 DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644 DIAAI ++D+++F +L T VFQLES GM++++K+L PD FED+IALVAL+RPGPL Sbjct: 603 DIAAIDIEDERAFRLLMDGRTKGVFQLESSGMREILKKLAPDTFEDIIALVALYRPGPLG 662 Query: 645 SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704 SGMVD+FI RKHGR + YP L+P+L TYG+ILYQEQVM+IAQVL+GY+LG Sbjct: 663 SGMVDDFIARKHGRAVVEYPL-----PQLEPILRETYGVILYQEQVMKIAQVLAGYSLGA 717 Query: 705 ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764 AD+LRRAMGKKKPEEMAKQRS+F +GA+ I+ E A IFDL+EKFAGYGFNKSHSAAY Sbjct: 718 ADLLRRAMGKKKPEEMAKQRSIFMDGAKAQQIDPEKAGYIFDLMEKFAGYGFNKSHSAAY 777 Query: 765 ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824 AL+SYQT WLKAHYP FMAA ++AD++NT+KVV V EC M +++LPPD+N F Sbjct: 778 ALISYQTAWLKAHYPVAFMAATLSADINNTDKVVNFVRECHDMSVQVLPPDVNRSAVIFS 837 Query: 825 V----NDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLE 880 V D+ + +G+ AIK VGE P+ A+++AR +GG F L DLC RT+ LNRR LE Sbjct: 838 VQPGAGDEDAVRFGLAAIKNVGEAPMAALVKAREEGGPFASLLDLCQRTEGGNLNRRTLE 897 Query: 881 KLIMSGAFDRLG-PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQ--S 937 LI +GA D LG +RAAL+++L +AL QH K + +G ++FG E + Sbjct: 898 NLIKAGACDGLGKGNRAALLSALPEALNRGTQHQKDQKLGFMNLFGDEEAENSESTANWK 957 Query: 938 YASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTE-------- 989 WPE+ L+ E+E LG Y++ HP+ +Y E+ Y G + L ++ Sbjct: 958 LPEVPDWPEEERLEREKEALGFYISSHPLRKYEAEMHDY-GLMSLSELREKYGPTSQEPM 1016 Query: 990 --RGKV-ITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDR 1046 G+V + G+VV ++ TK+G+R+ TL+D G++E ++F DA +++LE++ Sbjct: 1017 GNDGRVSVRFTGVVVERKLHRTKKGDRMLFVTLEDMLGQMEGVVFPDAYVANREVLEEEG 1076 Query: 1047 ILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLE 1106 LI GQ D +K+ + ++ R R L + + + L+ L L+ Sbjct: 1077 PLIFEGQAEVRD--EEVKVAIHSAVTLNNYRRHACRFLRVEVPAGLLRGGGLDELMALLQ 1134 Query: 1107 PHRSGT-IPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSEQVELE 1158 PH L + A AR L V PSD +L+ L G+ Sbjct: 1135 PHIGVDGCRTILVVRMAKARVTLELTLPGLVVPSDGVLDTLIQRFGNGAASFR 1187 >UniRef50_Q1AX16 DNA polymerase III catalytic subunit, DnaE type n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AX16_RUBXD Length = 1165 Score = 1253 bits (3243), Expect = 0.0, Method: Composition-based stats. Identities = 434/1177 (36%), Positives = 646/1177 (54%), Gaps = 62/1177 (5%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 F HL HS+YSM+DG ++ LV A GMP +A+TD N+ G V+FY AGIKP Sbjct: 7 EFAHLHCHSEYSMLDGASRIRDLVAFAREEGMPGIALTDHGNMYGAVRFYQEATKAGIKP 66 Query: 65 IVGADFNVQC------DLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDR 118 ++G + V D HLT+LA GY+NL L + + G+ P +D Sbjct: 67 VMGCEVYVTEWGTPMSDRSRSRYYHLTLLARTPEGYKNLMKLSTAGFLHGF-YYKPRVDA 125 Query: 119 DWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDE 178 L G+I LSG +V +L G E + Y E F D +LE+ G ++ Sbjct: 126 RTLRRHGRGIICLSGCLSAEVPARILEGRLDRARELLLEYAEIF-DAVYLEMQDHGLEEQ 184 Query: 179 ESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQ 238 + L GLP+VATND + SD H++ + I G +DP R R + + Sbjct: 185 RRVNRGLLRLHRETGLPLVATNDSHYTARSDARMHDVLLCIGTGKFYNDPNRMRFHGEEF 244 Query: 239 YMRSEEEMCELFADIPEALANTVEIAKRCN-VTVRLGEYFLPQFPTGDMST-EDYLVKRA 296 Y++ EEM LFAD PEAL NT + + + LG+ LP FP + T YL + Sbjct: 245 YVKPVEEMARLFADHPEALENTAGVVRSVEGPGIELGKTRLPNFPKPEGYTGSQYLRELC 304 Query: 297 KEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGV 356 + GL +R R PE RL+ EL+ I +MGF YFLIV +F++++KD G+ Sbjct: 305 ERGLRKRYG--------RRASDPEVRRRLDFELETIARMGFEDYFLIVWDFVKYAKDRGI 356 Query: 357 PVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIE 416 VGPGRGS AGS+VAYAL+ITDLDPL++ LLFERFLNP+R+SMPD D+DF + R +V+ Sbjct: 357 AVGPGRGSAAGSIVAYALEITDLDPLQYSLLFERFLNPDRISMPDVDIDFSVAGRSEVMR 416 Query: 417 HVADMYG-RDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP-GMTLAKA 474 +V + YG + V+QIITFGT+ AKA IRD R+ +PY D+++KLIP P G TL Sbjct: 417 YVTEKYGGHEHVAQIITFGTIGAKAAIRDAARIFQYPYAETDKLAKLIPEKPVGTTLKDV 476 Query: 475 F-----------EAEP----QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAP 519 E P ++ E DE K ++D A ++EG R+AG HA GVVI+ Sbjct: 477 LRRTGDGRYEPTEKHPGAAREILRFVERDEAAKRVLDTAFEIEGYARHAGTHAAGVVISE 536 Query: 520 TKITDFAPLYC-DEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAK 578 +TD PL ++ + Q SDVE GL+K DFLGLR L +I L ++ + + Sbjct: 537 EPLTDIVPLQRVAKDESSVMVQHPMSDVEALGLLKVDFLGLRNLDVIEETLRIVRETTGE 596 Query: 579 NGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALF 638 ++I IPLDD+++ + R +T VFQ ES GM+ +++ ++PD F+D++AL AL+ Sbjct: 597 R----INIREIPLDDEETLKLFARGDTFGVFQFESSGMQRMLQEVRPDRFDDLVALNALY 652 Query: 639 RPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLS 698 RPGP+ + NF KH E + YPD LKP+LEPTYG+ YQEQ+M+I++VL Sbjct: 653 RPGPMD--YIPNFKKGKHDPESVRYPD-----PRLKPILEPTYGVAAYQEQLMEISKVLG 705 Query: 699 GYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNK 758 G+T G AD LR+A+GKKK + +A R F G E+NG+ +A ++++ +EK GY FNK Sbjct: 706 GFTPGEADTLRKAIGKKKKDILATLRDKFMRGCEENGVEPGVARELWEWMEKAGGYSFNK 765 Query: 759 SHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINS 818 SHSA Y+ +++QT +LKAHYP +MAA++++ M+ ++V V E MG+++LPPD+N Sbjct: 766 SHSACYSFLAFQTAYLKAHYPTAYMAALLSSVMNTKDRVPQYVAEARAMGIEVLPPDVNE 825 Query: 819 GLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRV 878 F V D I +G+ A+K VG+ +EAI+ +R +GG FR++FD C R D N+R Sbjct: 826 SGKRFTVVGD-TIRFGLSAVKNVGDNTVEAILASREEGGPFRDIFDFCERVDPSTYNKRT 884 Query: 879 LEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSY 938 LE LI GAFDR G R+A++ +A++ + +A + Q MF + P + E Sbjct: 885 LESLIKCGAFDRTGHSRSAMLAVHTEAVERVSRGRRASSESQFAMFDLAEVAPPRPEVPA 944 Query: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998 P + L+ E+ETLGL+++ HP+ + ++ ++V + L ++ + G V+ AG Sbjct: 945 TPDDP---RRNLEWEKETLGLFVSDHPLRPVMHKLRKHVD-LSLSELDGRQDGAVVCVAG 1000 Query: 999 LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDD 1058 L + RV T++G + + LDD G EV++F + +D I+ V G+V + Sbjct: 1001 LATSVRVSTTRKGETMAVLQLDDTRGMAEVLVFPRVYAGCSAGIREDAIVKVKGRVDRKE 1060 Query: 1059 FSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLY 1118 G ++ A EV +++ A + + + + L + G P+ L Sbjct: 1061 --GIPRIVAMEVEELELAPG--PDPVYLRAAAFEGRPRSLALRAFEVVRRYPGESPLILV 1116 Query: 1119 YQRADARARLRFGATWRVSPSDRLLNDLRGLIGSEQV 1155 V S L +L+ L+G V Sbjct: 1117 SDGGRQEEV------CTVDDSSDLFAELKQLLGPRAV 1147 >UniRef50_C5V5V8 DNA polymerase III, alpha subunit n=2 Tax=Gallionellaceae RepID=C5V5V8_9PROT Length = 1204 Score = 1252 bits (3240), Expect = 0.0, Method: Composition-based stats. Identities = 586/1218 (48%), Positives = 789/1218 (64%), Gaps = 74/1218 (6%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M P FVHLR+HS+YS+ DG+A+ V A A GMPALA+TD +N GLVKFY G Sbjct: 1 MPSPVFVHLRLHSEYSITDGMARIDEAVDAAIADGMPALALTDLSNFSGLVKFYKKTRGK 60 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 G+KP+ G D + + D L +L ++ GY L L+S+AY + R+W Sbjct: 61 GLKPVAGVDVFITNEADRDRPYRLLLLCQSSEGYLRLCRLLSRAYLSNQYRERAELRREW 120 Query: 121 LI-ELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEE 179 E EGLI LSG +GDVG +L+ GN A + F DRY++E+ R G DE Sbjct: 121 FKDEGTEGLIALSGAHLGDVGCALMSGNVAEARRYAQGWAALFEDRYYIEVQRAGFADEA 180 Query: 180 SYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQY 239 +Y+ AA LA LPVVAT+ V+F+ S+DF AHE RV I +G+ L+D +R + ++ QQY Sbjct: 181 AYVDAATALAAGLDLPVVATHPVQFLTSADFKAHEARVCIAEGYVLNDKRREKAFTAQQY 240 Query: 240 MRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMST-EDYLVKRAKE 298 +++ EM ELFAD+PEAL N+VEIA+RCN+T+ LG+ LP FPT + +D+++ ++ Sbjct: 241 FKTQAEMSELFADLPEALQNSVEIARRCNLTLVLGKPRLPDFPTPSGESLDDFMLSESER 300 Query: 299 GLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKD----- 353 GL +R+AFL+PDE ER ++ P+Y ERL E+ I +MGFPGYFLIV +FI+W+K Sbjct: 301 GLADRMAFLYPDEAERAEKFPQYHERLLFEINTIIKMGFPGYFLIVADFIRWAKAYRSDA 360 Query: 354 --NGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKR 411 NGVPVGPGRGSGAGSLVAY L ITDLDPL ++LLFERFLNPERVSMPDFDVDFC + R Sbjct: 361 FPNGVPVGPGRGSGAGSLVAYCLLITDLDPLRYELLFERFLNPERVSMPDFDVDFCQDGR 420 Query: 412 DQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPD--PGM 469 + VI++V YG VSQI TFGTMA+KAVIRDVGRV+ PYG DR+SK IP + + Sbjct: 421 ELVIDYVKQKYGAACVSQIATFGTMASKAVIRDVGRVMEFPYGLCDRLSKAIPLEGVKPV 480 Query: 470 TLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLY 529 +L KA E EP++ I E++E V L+++A +LE +TRN G HAGGVVIAP K+TDF PLY Sbjct: 481 SLQKAREMEPEINAIAESEEGVPELLELAMRLEDLTRNVGMHAGGVVIAPGKLTDFCPLY 540 Query: 530 CDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGE-------- 581 C + G V+QFDK DVE GLVKFDFLGLRTLTII+WA+ I++ +A++ + Sbjct: 541 CADGGASVVSQFDKDDVEAIGLVKFDFLGLRTLTIIDWAVRHIHRLQARDRKGLPRTTNE 600 Query: 582 ---------------------------PPLDIAAIPLDDKKSFDMLQRSETTAVFQLESR 614 I AIPLDDK S+D+L++ TTAVFQLESR Sbjct: 601 TTTELLREGSRIEDQTQVSTQSSVHNPQLFSIEAIPLDDKPSYDLLKKCNTTAVFQLESR 660 Query: 615 GMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLK 674 GMKDLIKRLQPD FED++ALVALFRPGPL+SGMVD+F+DRKHGR Y H L+ Sbjct: 661 GMKDLIKRLQPDTFEDIVALVALFRPGPLESGMVDDFVDRKHGRATADY-----FHPELE 715 Query: 675 PVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKN 734 L+PTYG+I+YQEQVMQI+Q++ GYTLGGADMLRRAMGKK P EMA+QR +F GA Sbjct: 716 ASLKPTYGVIVYQEQVMQISQIIGGYTLGGADMLRRAMGKKDPAEMARQRDIFVSGALNR 775 Query: 735 GINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNT 794 I+ +LA ++FDL+E FAGYGFNKSHSAAYALV+YQT +LKAH+PA FMAA ++ D+DNT Sbjct: 776 EIDKDLATRLFDLMEMFAGYGFNKSHSAAYALVAYQTAYLKAHHPAAFMAATLSGDLDNT 835 Query: 795 EKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARN 854 EKV + + G+ IL PD+NS Y F D+ I YG+GAIKG GE I +I++AR Sbjct: 836 EKVRTFYADTLQQGITILLPDVNSSGYAFSPTDEKTISYGLGAIKGTGEAAIASIVKARA 895 Query: 855 KGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAK 914 G F++LFD C R D + +NRR +E LI +GAFD + HRAALM S+ AL A + Sbjct: 896 T-GPFKDLFDFCRRVDKRAVNRRTIETLIRAGAFDSINDHRAALMASVDAAL--ASADQQ 952 Query: 915 AEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIE 974 A +I Q +FG + IEQ + W + L E+ +LG+YL GHP +Y KE+ Sbjct: 953 ARSINQDSLFGEDDADAVLIEQK-SDVPRWSLREQLAFEKVSLGIYLGGHPYQEYEKELT 1011 Query: 975 RYVGGVRLKDMHPTERGK-------------VITAAGLVVAARVMVTKRGNRIGICTLDD 1021 ++ VRL D+ P GK + AG+V R+ T+RG R+ + TLDD Sbjct: 1012 NFIK-VRLGDLTPAFLGKNSGSGGYVSRRGVQVRLAGIVSGLRLQQTRRG-RMAVITLDD 1069 Query: 1022 RSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYA 1081 S ++E+ +F + +K +Q + +D +L+V G+ S D++SG ++++ E+ + +AR ++A Sbjct: 1070 GSAQIELTVFNEEYEKSRQWIVEDELLVVEGKASLDEYSGNIRVSGEELFNFAQARSRFA 1129 Query: 1082 RGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDR 1141 R L + + +L++ L+P G V + Y A +LR G W+V+ + Sbjct: 1130 RQLELHCNSSVN----IAQLKEILKPWSGGACAVQINYNNEVAVCQLRLGTDWQVTLDEA 1185 Query: 1142 LLNDLRGLIGSEQVELEF 1159 L+ DL L+ +++ + Sbjct: 1186 LMRDLGVLLQPGNMQVVY 1203 >UniRef50_B9KZ27 DNA polymerase III alpha subunit n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KZ27_THERP Length = 1166 Score = 1250 bits (3236), Expect = 0.0, Method: Composition-based stats. Identities = 449/1185 (37%), Positives = 653/1185 (55%), Gaps = 57/1185 (4%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M+ P + HL +H+++S++DGL + V +A LGM LAI+D L G++ +Y A Sbjct: 1 MARP-YAHLHLHTEFSLLDGLGRIPEYVGRARELGMEHLAISDHGVLYGIIDWYKAVRAE 59 Query: 61 GIKPIVGADFNVQCDLLGDE---LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIID 117 G+ PI+G + + + D + HL +LA N GY+NL L ++A G+ P ID Sbjct: 60 GLHPIIGMEAYLAPRSVQDRDKTIYHLLLLAENERGYKNLLKLATRASLEGF-YYKPRID 118 Query: 118 RDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRTGRP 176 L E EGLI S G + +LL GN E E F PDR+++EL G P Sbjct: 119 MAMLAEHAEGLIATSACLGGPIANNLLNGNHEAAREWGIRLRELFGPDRFYIELQDHGLP 178 Query: 177 DEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSP 236 ++ V LA LP+V TNDV ++ D ++ + I TLDDPKR R S Sbjct: 179 EQRRVNSELVALARELDLPLVVTNDVHYLRQEDASVQDLLICIQTNSTLDDPKRMRVQSD 238 Query: 237 QQYMRSEEEMCELF-ADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTG-DMSTEDYLVK 294 Q Y +S EEM LF A++PEAL NTV IA+RC V + G LP M+ +DYL Sbjct: 239 QLYFKSAEEMWRLFGAEVPEALLNTVRIAERCEVELEFGRLHLPDPGIPAGMTADDYLAA 298 Query: 295 RAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDN 354 EG+ +R L E RLE EL VI Q GF Y LIV +F ++++ Sbjct: 299 LCWEGIRQRYPEL----------TEEVRRRLEYELDVIRQTGFSSYMLIVRDFAEFARQR 348 Query: 355 GVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQV 414 G+ G RGS A S+V YAL ITD+DPL L+FERFLNPER MPD D+DF ++R +V Sbjct: 349 GILYGV-RGSAAASIVLYALGITDVDPLANRLVFERFLNPERREMPDIDMDFADDRRHEV 407 Query: 415 IEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKA 474 IE+VA YG + V+QIITFGTM AKA IRDVGR +G P+ VDRI++LIP MTL +A Sbjct: 408 IEYVARKYGAEHVAQIITFGTMGAKAAIRDVGRAMGWPHAEVDRIARLIPSGVNMTLERA 467 Query: 475 FEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLY---CD 531 E P+L +YE D + LID ARKLEG+ R+AG HA GVVI+ + + + PL Sbjct: 468 LEESPELRHLYETDPRSRELIDNARKLEGIARHAGTHAAGVVISASPLVEHVPLQRPARA 527 Query: 532 EEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPL 591 EEG P TQF V GL+K DFLGL LTI+ A+E+I + R + +D+ IP+ Sbjct: 528 EEGALPTTQFPMETVAEIGLLKMDFLGLANLTILANAVELIRETRGET----IDLKQIPM 583 Query: 592 DDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNF 651 DD+K+F++L +T VFQLES GM+ I+ L+P ++ A++AL+RPGP+Q + + Sbjct: 584 DDRKTFELLAEGQTFGVFQLESAGMRRYIRELRPTSVAELAAMIALYRPGPMQH--IPRY 641 Query: 652 IDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRA 711 KHG E I YP H L +L+ TYG+I+YQ+QV+ IA+ +GYTLG AD++R+A Sbjct: 642 CRAKHGLEPIQYP-----HPDLAEILDETYGVIVYQDQVLLIARKFAGYTLGEADIMRKA 696 Query: 712 MGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQT 771 MGKK PE+M +R F GA G + E A +IF+L+E FAGY FNK+H+ YA+VSYQT Sbjct: 697 MGKKIPEKMRAERERFIAGAIAKGYSEEDAERIFNLIEPFAGYAFNKAHATCYAVVSYQT 756 Query: 772 LWLKAHYPAEFMAAVMTADMDNTE----KVVGLVDECWRMGLKILPPDINSGLYHFHVN- 826 +LKA+YP E+M A++ + ++ + EC ++G+ +LPPDIN F V Sbjct: 757 AYLKANYPVEYMTAILRNAPSHPSGTVKRIAAALAECQKLGISVLPPDINHSEATFTVEQ 816 Query: 827 ---DDGEIVYGIGAIKGVGEGPIEAIIEARNK--GGYFRELFDLCARTDTKKLNRRVLEK 881 I +G+ +K VGE +EAI+ ARN+ G FR C D +NRR +E Sbjct: 817 LPDGSRAIRFGLAMVKHVGEAAVEAILAARNEQPGKVFRSFEHFCETIDWSVVNRRAVES 876 Query: 882 LIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLA-EEPEQIEQSYAS 940 LI GA D G R L+ L A++AA KA GQ D+F + ++ + S Sbjct: 877 LIKCGALDCFG-DRKILLAQLDQAIQAAQARQKALRRGQMDLFSAVGHDQAAPLRFSRPD 935 Query: 941 C--QPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998 P + +L ERE LG+YL+ HP+++++ + R G V++ ++ G+ + Sbjct: 936 IEPPDIPTRTLLGWERELLGVYLSAHPLDEFV-LLGRLRGLVQIAELDDESVGQTVELLA 994 Query: 999 LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDD 1058 L+ R + T+ G + + L+DRSG +E ++F D + ++ L ++ I+++ +V + Sbjct: 995 LISGVRKLTTRTGRVMAVLQLEDRSGTIEAVVFPDLYETTRERLAEESIVLLQARVE--E 1052 Query: 1059 FSGGLKMTAREVMDIDEAREKYARG---LAISLTDRQIDDQLLNRLRQS--LEPHRSGTI 1113 + L++ V D E + + + L D+ + R+ L +G Sbjct: 1053 RNEELQLVVESVADPREDLRNLVQPSRIVHVRLPITTSVDEDIERMHALRDLLVTFAGDD 1112 Query: 1114 PVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSEQVELE 1158 V ++ A + + RV + +G+ V +E Sbjct: 1113 EVRIHLPLAQGE--IVLASRLRVDWCADFARVIEATLGAGSVWVE 1155 >UniRef50_Q0F0W7 Putative uncharacterized protein n=2 Tax=root RepID=Q0F0W7_9PROT Length = 1169 Score = 1250 bits (3235), Expect = 0.0, Method: Composition-based stats. Identities = 501/1168 (42%), Positives = 698/1168 (59%), Gaps = 30/1168 (2%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M F HL VHSD+S++ K L+ K A L PA+A+TD+ NL G ++FY Sbjct: 1 MRFAPFAHLHVHSDFSLLGSTLKIGDLLHKVAELRQPAVALTDYGNLFGAIEFYSKAMRM 60 Query: 61 GIKPIVGADFNVQCDLLG--------DELTHLTVLAANNTGYQNLTLLISKAYQRGYGAA 112 GIKPI+G + + D L +LA NN G++NL L+S +Y G+ Sbjct: 61 GIKPIMGCEVFICEDHTKRISEGPRGPRFPQLVLLARNNHGWKNLLKLVSISYLDGF-YY 119 Query: 113 GPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDR-YFLELI 171 P + + L E +GLI +S G G++ + L RG+ + Y + F + +F+E+ Sbjct: 120 KPRVGKPLLSEHADGLIAISSGWNGEIEQHLQRGDIEGARKVAIAYRDMFHEGCFFIEIQ 179 Query: 172 RTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRP 231 R +E +ELA +P+VA+N+ F++ DF+A + A+ TL+D Sbjct: 180 RQNGSGQEQINELLIELAHELDIPLVASNNAHFLEREDFEAFQAMQALQQNRTLND-DVS 238 Query: 232 RNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF-PTGDMSTED 290 +++P+ Y++S EEM ELF DIPEAL NTV IA RCNV ++ G Y LP F P DM Sbjct: 239 GHFTPEYYLKSYEEMQELFEDIPEALENTVHIANRCNVDLQFGNYQLPDFQPPEDMELSA 298 Query: 291 YLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQW 350 Y+ +++ EGL++R + + + R YD RL EL VI MGFPGYFLIV +FI W Sbjct: 299 YMRQQSMEGLDDRWPAILAGDPD--AVRETYDARLAFELDVIENMGFPGYFLIVSDFITW 356 Query: 351 SKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEK 410 +K G+PVGPGRGSGAGSLVAY LKITDLDP+++ LLFERFLNPERVSMPDFD+DFCM + Sbjct: 357 AKHQGIPVGPGRGSGAGSLVAYCLKITDLDPIKYGLLFERFLNPERVSMPDFDIDFCMSR 416 Query: 411 RDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMT 470 R++ I +V YG D V+QIITFG+M AKAVIRDVGRVL V+ I+KL+P D MT Sbjct: 417 REEAIRYVTHKYGEDKVAQIITFGSMKAKAVIRDVGRVLPMELAKVNMIAKLVPNDLKMT 476 Query: 471 LAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYC 530 L KA EP+L ++ + D EV L +A++LEG RNAGKHA GV+I ++ D APL+ Sbjct: 477 LEKALVDEPKLAKMVKEDVEVARLFALAKRLEGSHRNAGKHAAGVIIGRRELVDTAPLFK 536 Query: 531 DEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIP 590 + V Q+D ++VE GL+KFDFLGL+TLT+I+ A++++ + + + DI IP Sbjct: 537 VAGEEGKVVQWDMANVEKVGLIKFDFLGLKTLTVIDIAVKLVRQYESGDAAKHFDITTIP 596 Query: 591 LDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDN 650 + D+ +F ++QR +T AVFQ+ES GM+DL+ RL+PDCFED+IALVAL+RPGPL+SGMVD Sbjct: 597 MHDEATFQLMQRGQTGAVFQVESSGMRDLLTRLKPDCFEDIIALVALYRPGPLESGMVDT 656 Query: 651 FIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRR 710 FI+ KHGR+ I YP LK +L+ T G+ILYQEQVMQIAQ+L+G++LG ADMLRR Sbjct: 657 FIECKHGRQAIEYPL-----PQLKTILQETNGVILYQEQVMQIAQLLAGFSLGQADMLRR 711 Query: 711 AMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQ 770 AMGKKK EEMA+QR +F GAEK ++ + A +FDL+EKFAGYGFNKSHSAAYAL+SYQ Sbjct: 712 AMGKKKAEEMAEQRKIFMAGAEKQKVDLDKAEHMFDLMEKFAGYGFNKSHSAAYALISYQ 771 Query: 771 TLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGE 830 T +LKAHYP FMAA M+ DM NT+K+ LV +C MG+ +L P IN + F D Sbjct: 772 TAFLKAHYPRAFMAATMSCDMGNTDKLALLVTDCRNMGIDVLQPHINESDWEFRPEGD-C 830 Query: 831 IVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDR 890 I YG+G IKGVGE + A+I+ R G F D+ R + LN+R+LE +I +GA Sbjct: 831 IRYGLGGIKGVGEAALRAVIDERKTNGEFTSFEDMIMRAPARTLNKRILEAMIRAGALQG 890 Query: 891 LGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVL 950 L PH+ A + LG+ L+ + K A Q+ +F V EPE + + + W L Sbjct: 891 LIPHQRAALEGLGEVLENLSRKRKEFASNQSFLFTV--AEPESADGGFPTLPAWSPGESL 948 Query: 951 DGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKR 1010 ERE LG YLTGHP+ +LK +G L ++ E G I + + R R Sbjct: 949 QAEREVLGFYLTGHPLEAWLKRTTG-LGDCNLSELKEREEGAEIVVPVGISSIRQYQGGR 1007 Query: 1011 GNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREV 1070 G + L+D G+ E++ F+ +LL+ D L+++ +V D + A Sbjct: 1008 G-TMAFVQLEDLHGQAEMVCFSTIYADIAELLQADIPLLIAARV--DKSKDEPVLIAEAA 1064 Query: 1071 MDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRF 1130 + E + + I+ D+ L RL+ + G + + + DA + Sbjct: 1065 ASLAELVPELVTEVRITTASLAWDEITLARLKSLAQ---GGPARLSFHVRLPDASLAI-L 1120 Query: 1131 GATWRVSPSDRLLNDLRGLIGSEQVELE 1158 + + + L G E + L+ Sbjct: 1121 QTGPCLRWDEDVKTQLDARFGPESIHLQ 1148 >UniRef50_B1C7S2 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C7S2_9FIRM Length = 1215 Score = 1247 bits (3227), Expect = 0.0, Method: Composition-based stats. Identities = 432/1246 (34%), Positives = 696/1246 (55%), Gaps = 119/1246 (9%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS P F HL VH++YS++DG K L K +GM ++AITD N+ G+++FY A Sbjct: 1 MSIP-FTHLHVHTEYSLLDGFCKIKELPKLVKDMGMDSIAITDHGNMFGVIEFYRACRKE 59 Query: 61 GIKPIVGADFNVQCDLLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 GIKP++G + + H + A N GY+NL ++S AY G+ Sbjct: 60 GIKPVLGCEIYMTMGDRKGRDPMNDKQSFHFILFAENEIGYKNLMKVVSIAYTEGF-YYK 118 Query: 114 PIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIR 172 P D D L + +EG+I S G + R + G + + + + D +FLE+ Sbjct: 119 PRADFDLLEKYSEGIIATSACIGGIIPRKINSGEIEEAKKYLERFINIYGKDNFFLEIQD 178 Query: 173 TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 G +E++ +++A+ G+ ++ATND ++ SD +AH++ + + L D R R Sbjct: 179 HGLEEEKTANEELIKMAKEYGVGLIATNDSHYLRKSDSEAHDVLLCVQTASNLSDENRMR 238 Query: 233 NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDY 291 + + Y+++ EEM +LF PEA+ NT +IA+RCNV + G Y LP FP + +++ Y Sbjct: 239 FPNDEFYIKTPEEMSDLFKYCPEAIENTHKIAERCNVEIEFGHYHLPVFPLPEGMTSQQY 298 Query: 292 LVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWS 351 L K +GL ++ + E ERLE EL VIN MGF YFLIV +FI +S Sbjct: 299 LKKLCMDGLYKKYDNV----------TKELTERLEYELGVINDMGFNDYFLIVWDFINYS 348 Query: 352 KDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKR 411 + + +PVGPGRGS AGS+V+Y L IT +DP+++ L+FERFLN ERVSMPD D+DFC EKR Sbjct: 349 RTHDIPVGPGRGSAAGSIVSYTLDITQIDPIKYALIFERFLNNERVSMPDIDIDFCYEKR 408 Query: 412 DQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL 471 + IE+V + YG D VSQI+TFGT+ KA ++D+ R +G + ++I+KLIP + +T+ Sbjct: 409 HEAIEYVIEKYGFDNVSQIVTFGTLKPKAAVKDIARSMGISFDQSNKIAKLIPDEAKITI 468 Query: 472 AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCD 531 KA P+L ++Y+ D +K L+D A+ +EG+ R++ HA GV+I+ ++D+ PLY + Sbjct: 469 EKAIAMNPELHQMYDEDPTIKKLLDTAKAVEGMPRHSSTHAAGVIISDRAVSDYVPLYLN 528 Query: 532 EEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPL 591 ++ QF+ + VE GL+K DFLGL+ LT+I L+ I + + +DI I L Sbjct: 529 KDS--IAAQFNMTTVEELGLLKMDFLGLKNLTVIKHTLDNIKLSKGID----VDIDNISL 582 Query: 592 DDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNF 651 D+ FD + R +T VFQL S GM+ ++RL+P+ FED+IA ++L+RPGP+ M+ + Sbjct: 583 TDQNVFDTISRGDTIGVFQLASPGMQSFMQRLKPNTFEDIIAGISLYRPGPMD--MIPTY 640 Query: 652 IDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRA 711 ID KH ISY H SL+P+L TYGII+YQEQVMQI + L+GY++G +D++RRA Sbjct: 641 IDNKHNPANISY-----LHPSLEPILNVTYGIIIYQEQVMQIVRDLAGYSMGRSDLIRRA 695 Query: 712 MGKKKPEEMAKQRSVF----------------AEGAEKNGINAELAMKIFDLVEKFAGYG 755 MGKKK E +AK+R +F G GI+ + +I+DL+EKFA YG Sbjct: 696 MGKKKHEVIAKEREIFLHGNEEAFNKGEDKEKVHGCVAIGIDEKTGNEIYDLMEKFASYG 755 Query: 756 FNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPD 815 FNKSH+AAY ++SYQT +LK +YPAEFMAA++T + + ++++ ++ G+K+LPPD Sbjct: 756 FNKSHAAAYGVISYQTAYLKTYYPAEFMAALITVYIGSDDRML-YMNHLKEKGIKLLPPD 814 Query: 816 INSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLN 875 +N F V D+G + +G+ A+KG+GE IE II+AR + G F D + + LN Sbjct: 815 VNKSYSRFTV-DNGSVRFGLLALKGLGESAIEEIIQAREEKGDFTSFPDFVNKIEFNSLN 873 Query: 876 RRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLA-EEPEQI 934 ++ +E LI+SGAFD LG +R L D L + K GQ + +L+ EE EQI Sbjct: 874 KKGVESLILSGAFDSLGNNRRELYCVYEDFLNDTLRQRKQNIAGQTTLLEMLSQEENEQI 933 Query: 935 EQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKV- 993 E + + + + L E+E +G+Y++GHP+ ++ +++ +Y L +++ K Sbjct: 934 EMTIPTMAEFETKEKLKFEKEVMGMYISGHPLAEHEEDLNKYTSMQ-LYEVYDRYGNKNS 992 Query: 994 --------------------------ITAAGLVVAARVMVTKR-GNRIGICTLDDRSGRL 1026 IT GLV +V+ TK+ ++ T++D + + Sbjct: 993 EEEEEAEPQPPVNNKYNKFNKNKRELITIGGLVTYVKVIYTKKDNKQMAFMTVEDLTSDM 1052 Query: 1027 EVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGG--LKMTAREVMDIDEAREKYA--- 1081 E+++F ++Y+ +L++D LI+ GQVS + + + A ++ D+++ R + Sbjct: 1053 EIVVFPRTFEEYKDILKEDNKLIIKGQVSVKEEDEEKSVSIIADKIWDMEDKRSRPPAIR 1112 Query: 1082 ---------RGLA--------------------ISLTDRQIDDQLLNRLRQSLEPHRSGT 1112 + + ++L +I+++ ++ +R+ ++ G Sbjct: 1113 KKDVIQPRIKKVQEKAVSPEIKKANSKKIIGNSLTLVLNRINERTMSDIRKLFVKYK-GD 1171 Query: 1113 IPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSEQVELE 1158 V L+ ++ + V L+++L LIG + ++ Sbjct: 1172 KKVVLF--SPVSKKSYVADKSMWVQLEIGLIDELAELIGKNNIIIK 1215 >UniRef50_B0S231 DNA polymerase III alpha subunit n=3 Tax=Clostridiales Family XI. Incertae Sedis RepID=B0S231_FINM2 Length = 1161 Score = 1245 bits (3223), Expect = 0.0, Method: Composition-based stats. Identities = 423/1185 (35%), Positives = 662/1185 (55%), Gaps = 60/1185 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F HL VH++YS++DG + L+ KA L M A+AITD ++ G VKFY IKPI Sbjct: 5 FTHLHVHTEYSLLDGFSPIEKLLDKAKDLQMKAIAITDHGSMFGTVKFYKECKKRNIKPI 64 Query: 66 VGADFNVQCDLLGDE------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRD 119 +G + + HL +LA N GY NL ++S Y G+ P +D++ Sbjct: 65 IGCEIYTTNKDHKIKNPENKFYNHLVLLAKNQQGYSNLMKIVSLGYVEGF-YYKPRVDKN 123 Query: 120 WLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEE 179 L + +EG+I LS G+V SL+R + ++ + + ++LEL ++ Sbjct: 124 TLRKYSEGIIALSACLKGEVQESLIRYGYDKAKDVAKELKDIYGEDFYLELQNHSSREDM 183 Query: 180 SYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQY 239 + ++A+ + +V TNDV +I+ D+ H I + + G T+++ + + + Sbjct: 184 VVMENIPKIAKELDIGLVCTNDVHYIEKEDYKIHNILICLQTGKTIEEDNKMSYIPGEFF 243 Query: 240 MRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKRAKE 298 +RSEE+M +LF + PEA+ NT +IA+ CNV + G LP F D + YL K + Sbjct: 244 LRSEEQMKDLFKEYPEAIENTKKIAEMCNVELEFGHLHLPYFAIPDGFTNSSYLKKLVFD 303 Query: 299 GLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPV 358 GLE+R A +R E ER E EL VI +MG+ YFLIV +FI+++K +PV Sbjct: 304 GLEKRFAND--------ERLQEAKERCEYELSVIEKMGYVDYFLIVWDFIRFAKSQDIPV 355 Query: 359 GPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHV 418 GPGRGS AGS+++Y L+ITD++PL++DL+FERFLNPERVSMPD D+DFC E+R++VI++V Sbjct: 356 GPGRGSAAGSIISYCLEITDINPLDYDLIFERFLNPERVSMPDIDIDFCYERREEVIDYV 415 Query: 419 ADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAE 478 + YG D V+QI+TFGTMAA+ IRDVGRVL + VD +K +P + + K+ E Sbjct: 416 VNKYGEDKVAQIVTFGTMAARNAIRDVGRVLAMDFKTVDDTAKKVPNLLNINIDKSLEIS 475 Query: 479 PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538 P+ + YE + +VK L+D+AR++EG+ R+ HA GVVI+ I ++ PL + Sbjct: 476 PEFRKAYEENRDVKKLVDVARRVEGMPRHTSTHAAGVVISKLPIMEYVPL--AINKDAVI 533 Query: 539 TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598 TQF+ +++E GL+K DFLGLRTLT+I+ ++ I K + ++ + +D K Sbjct: 534 TQFNMTELEELGLLKMDFLGLRTLTVISDCIKYIKKNK----NIDVNFEDMNENDPKVLS 589 Query: 599 MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658 M ++T +FQ ES+GM++ +K L+P F+D+IA ALFRPGP+ + +I KH Sbjct: 590 MFTVAQTLGIFQFESQGMRNFLKELKPTKFDDLIAANALFRPGPM--NEIPTYIHNKHNE 647 Query: 659 EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718 E++ Y L+ +L+PTYG I+YQEQVMQI Q ++G++LG AD LRRAM KKK + Sbjct: 648 EDVEYLS-----PLLEDILKPTYGTIVYQEQVMQIVQKIAGFSLGEADNLRRAMSKKKMK 702 Query: 719 EMAKQRSVF------------AEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 M R F EGA + G+ ++A KI+DL+ FA Y FNKSHSAAY+L Sbjct: 703 VMEDGRKEFIFGKEDENGNILIEGAIRRGVEEDVANKIYDLMIDFAKYAFNKSHSAAYSL 762 Query: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 V+ +T WLK +YP EF+AA++++ M NT ++ ++E R+ ++I PPDIN L F V Sbjct: 763 VAMRTAWLKYYYPVEFLAALISSVMGNTSQISLYIEEARRLEIEISPPDINYSLDKFDV- 821 Query: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCART---DTKKLNRRVLEKLI 883 D I+YG+ AIK VG I+ I +RN+ G F+ D R D +N+R +E LI Sbjct: 822 KDNSIIYGLKAIKNVGTNLIDQTIISRNENGKFKSFRDFVERIYAKDKSAINKRSIESLI 881 Query: 884 MSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQP 943 +GAF LG RA LM + + K GQ+++F + E + + Sbjct: 882 KAGAFSSLGETRATLMLQYQSIIDSVQSGLKNNVPGQSNLFDMFESNEENDRDDFTRREE 941 Query: 944 WPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVR-----LKDMHPTERGKVITAAG 998 + + +L E+E LG+YL+ HP+ Y I +Y GK + G Sbjct: 942 FDKSELLRMEKEVLGIYLSDHPLRAYSSIIGQYSNFSTGDLEDDAYNEKNFDGKRVKVVG 1001 Query: 999 LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDD 1058 ++ + TK + +D G +E+++F ++Y ++L +D ILIV G+++ + Sbjct: 1002 IIESINKKFTKNQKIMEFVKFEDLYGTMELIVFPQKYEQYSEILNEDEILIVGGRLNIIE 1061 Query: 1059 FSGGLKMTAREVMDID-----EAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTI 1113 K+ + I E +E+ L + +T + + +L++++ L + G Sbjct: 1062 GED-PKIIVDSIQSIKSISNVEKQEESETKLFLRIT-KNMPSYILDKVKPILL-NSKGDT 1118 Query: 1114 PVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSEQVELE 1158 ++Y++ D + G +R+S D +++L L+G E V L+ Sbjct: 1119 QSNIYFE--DKKQNYLLGNEFRISCEDNTIDELVSLLGRENVVLK 1161 >UniRef50_C1A6B9 DNA polymerase III alpha subunit n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A6B9_GEMAT Length = 1165 Score = 1245 bits (3221), Expect = 0.0, Method: Composition-based stats. Identities = 454/1188 (38%), Positives = 655/1188 (55%), Gaps = 59/1188 (4%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS FVHL HS+YS++DG + L+K+A MPALAITD N+ +F A Sbjct: 1 MS---FVHLHCHSEYSLLDGANRIDDLIKRAQHFEMPALAITDHGNMHAAWEFQEKARKA 57 Query: 61 GIKPIVGADFNVQCDLLGDE---------LTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111 GIKPI+G + V HL +LA + GY+NL L S Y G+ Sbjct: 58 GIKPILGMEAYVAPGDRRQRGRPAPGVKPYYHLVLLARDIVGYRNLVKLTSLGYTEGF-Y 116 Query: 112 AGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELI 171 P IDR+ L + +EGLI+ S G+V L+ E A+Y E F RY LE+ Sbjct: 117 TKPRIDRELLAQYSEGLIVSSACLAGEVASHLMEDRVDQAREAAAWYAELFKGRYHLEVQ 176 Query: 172 RTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRP 231 + + LA+ LPVVATND F+ D DAH++ + I G +D R Sbjct: 177 AHTSEGQAILNAKILSLADELSLPVVATNDAHFLKHEDHDAHDVLLCIGLGKDRNDRDRM 236 Query: 232 RNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM--STE 289 + Y Y ++ +E+ F + L NT+ IA +V +Y++P FP + + Sbjct: 237 K-YDDGLYFKAPDEIRTFFPGREDVLTNTLAIADAVDVQFAK-KYYVPSFPLPEGVATEN 294 Query: 290 DYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQ 349 D LV+ A +G +ER P ERL+ EL VI + G+ GYFLI +FI+ Sbjct: 295 DMLVQIATDGAKERYGDPLP---------ANVQERLDYELGVITKTGYAGYFLITADFIK 345 Query: 350 WSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCME 409 ++D G+PVGPGRGS AGSLVAYA +ITD+ PLEFDLLFERFLNPERVSMPD DVDFC E Sbjct: 346 AARDRGIPVGPGRGSAAGSLVAYATRITDVCPLEFDLLFERFLNPERVSMPDVDVDFCFE 405 Query: 410 KRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGM 469 +R +VIE+V YG+D+V QI+TFGTM ++A I+DVGR LG D ++KLIP P Sbjct: 406 RRGEVIEYVRQKYGKDSVGQIVTFGTMKSRAAIKDVGRTLGFTPAETDALAKLIPNAPNF 465 Query: 470 TL--AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAP 527 +L +A E P++ Y+ DE + L+D A KLEG++R+ G HA GVVIAP + +F P Sbjct: 466 SLTVKEAIEQVPEVKAFYKNDERYRQLLDFAVKLEGLSRHTGVHAAGVVIAPGPLDEFVP 525 Query: 528 LYC--------DEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKN 579 + D + + VTQ+D + +E AG++K DFLGL TLT+I L I +R K+ Sbjct: 526 ICTQASKGAGGDGDERVIVTQYDMTALEKAGMLKMDFLGLTTLTVITDTLRNIKERLGKD 585 Query: 580 GEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFR 639 D+K++ +L+ T VFQ ES D++KR++ D F+D++A AL R Sbjct: 586 VVLEERG----FTDEKTYQVLRAGRTGGVFQFESPLATDVLKRMRCDRFDDLVASNALLR 641 Query: 640 PGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSG 699 PGPL +GM + +I RK G E Y L+P+L TYG+I YQEQVM+IAQVL+G Sbjct: 642 PGPLDAGMHNVYIRRKRGEEPTVYAL-----PELEPILSNTYGVITYQEQVMRIAQVLAG 696 Query: 700 YTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKS 759 +L AD+LR+A+GKK E + K+ F E A G + ++ ++ +E F YGFNKS Sbjct: 697 ISLAEADVLRKAVGKKDAELIKKELGKFTEKAIARGYSKKIIEELAGQIETFGRYGFNKS 756 Query: 760 HSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSG 819 HS AY++V+Y T +LK HYPAEFMAA++++++ TE+V+ + E MG+++L PD+N Sbjct: 757 HSVAYSVVAYHTAYLKTHYPAEFMAALLSSNIGKTEEVIKYIAEAREMGIEVLAPDVNES 816 Query: 820 LYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVL 879 + F V D I +G+GAI+ VG+G I++++ AR + G F L DLC R D + N+RV Sbjct: 817 GWRFTVIGDKRIRFGLGAIRNVGKGAIDSLLAARTE-GAFPTLHDLCGRVDLRLCNKRVF 875 Query: 880 EKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPE------- 932 E L+ +GA D LG HRA L+ +L A+ A + GQ +FG L + Sbjct: 876 EALVAAGACDTLGGHRAQLLGALDHAISEASLQQEEAERGQGSLFGDLMGDAPGNGGGNN 935 Query: 933 QIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGK 992 Q + W E L E+E LG Y++GHP+ + E E + K T + Sbjct: 936 AAPQMLPNIAMWSESERLQREKELLGFYISGHPLEPHRTECELFATSTVAK--LGTWTAE 993 Query: 993 VITAAGLVVAARVMVTKR-GNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVS 1051 +T +V A R ++KR G T++D SG EV++F +A + + D L++ Sbjct: 994 PVTIGVVVTAIRKQISKRTGAEFARLTVEDFSGSSEVLVFPEAWGVIAERVRPDVPLLLK 1053 Query: 1052 GQVSFDDFS-GGLKMTAREVMDIDEAREKYARGLAISLTDR-QIDDQLLNRLRQSLEPHR 1109 G S D G EV E R +AI L + +++ +R +E H Sbjct: 1054 GGYSRKDQDVEGATFIVNEVTRFAELRASGDVAVAIDLGVSLDLSPAMMDDVRAKVESHE 1113 Query: 1110 SGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSEQVEL 1157 G+ P+ + + + + + RV+ S +L+DLR L+G+++V L Sbjct: 1114 -GSAPLEVRWLDGNGKVVRFRSKSLRVTASPAILSDLRALLGADRVRL 1160 >UniRef50_C8ND72 DNA polymerase III, alpha subunit n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8ND72_9GAMM Length = 1177 Score = 1245 bits (3221), Expect = 0.0, Method: Composition-based stats. Identities = 566/1182 (47%), Positives = 759/1182 (64%), Gaps = 38/1182 (3%) Query: 7 VHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIV 66 HL +HS++S+ D + + +V A + G A+A+TD NL G +KFY AGIKPI+ Sbjct: 5 THLHIHSEFSLSDSILRVGEIVDFAKSQGAEAIALTDRNNLYGALKFYKKARAAGIKPIL 64 Query: 67 GADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-IELN 125 G D V+ D L +LA N G+ +L L+S AYQ G + + Sbjct: 65 GCDLTVRDSDGTDNQ--LILLAQNLKGFIHLCELVSFAYQYDQDHQGVAVHIERFTPTQC 122 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 185 EGLI LSGG GD+ R L R ++ ++ AF++ FPDRY+L+L R G+P E Y Sbjct: 123 EGLIALSGGIDGDLARFLRRRDAQGAEKRAAFWQGIFPDRYYLQLARHGQPGEAEYFDWC 182 Query: 186 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 245 + G+ VATN F + D+D HE+RV I +G+ D KRPR ++ + + S+ Sbjct: 183 RDAGRKLGIAAVATNLACFPTADDYDVHEVRVCISNGWLRADDKRPRYFTQKYHFTSDAV 242 Query: 246 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKRAKEGLEERL 304 M E FAD P+ LANT +A RCN+ + LG+ +LP FP D + E +L+ AK GLE RL Sbjct: 243 MAERFADAPQILANTHAVAARCNLELTLGKNYLPDFPLPDGVNIETFLIDSAKSGLELRL 302 Query: 305 AFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGS 364 A LFPDE ER +R YDERL EL VINQMGFPGYFLIV +FIQW+KD+ +PVGPGRGS Sbjct: 303 AQLFPDEAERAAKRAPYDERLAIELGVINQMGFPGYFLIVADFIQWAKDHDIPVGPGRGS 362 Query: 365 GAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGR 424 GAGSLVAYALKITDLDPL +DL FERFLNPERVSMPDFDVDFCME+RD+VIE+V+ YG Sbjct: 363 GAGSLVAYALKITDLDPLAYDLFFERFLNPERVSMPDFDVDFCMERRDEVIEYVSHKYGA 422 Query: 425 DAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAE------ 478 VSQI T GTMAAKAV+RDVGRVLG PY VD++ +PP G+TL A Sbjct: 423 QRVSQIATHGTMAAKAVLRDVGRVLGVPYPVVDKLVATVPPVLGITLPDALGRSTKSQDK 482 Query: 479 PQLP-----EIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEE 533 P+L E+YE DEE++ +ID+ +LEG+ RN GKHAGGVVIAPTK+TDF+ LY + Sbjct: 483 PELRSEAMQELYEKDEEMRDIIDIGLQLEGLARNVGKHAGGVVIAPTKLTDFSALYSESA 542 Query: 534 GKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDD 593 G TQFDK D+E GLVKFDFLGLRTLT+I+WAL IN RR + G+PPLDIA +PLDD Sbjct: 543 GAGIATQFDKDDIEAMGLVKFDFLGLRTLTVIDWALGHINARRTREGQPPLDIATLPLDD 602 Query: 594 KKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFID 653 +++ +LQ + TTAVFQLES GMK+LI++L+PD FED+IALVALFRPGPL SGMVD+FI+ Sbjct: 603 PQTYALLQSTRTTAVFQLESSGMKELIRKLRPDTFEDIIALVALFRPGPLGSGMVDDFIN 662 Query: 654 RKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMG 713 RKHG E+ YP H L+ +L+ TYG+++YQEQVMQ+AQ L+ Y+LG AD LRRAMG Sbjct: 663 RKHGLAEVEYP-----HPDLEGILQTTYGVMVYQEQVMQVAQKLANYSLGEADNLRRAMG 717 Query: 714 KKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLW 773 KKK EEMA+ + +F A + G+ + A IFDL+ KFA YGFNKSHSAAYAL+SYQT W Sbjct: 718 KKKAEEMARNKDIFVSRAVERGVPEKQATDIFDLMAKFAEYGFNKSHSAAYALLSYQTAW 777 Query: 774 LKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVY 833 LKAHYPAE MAAV+T++++ +K+V ++E MGL ++PP IN Y F V++ GEI+Y Sbjct: 778 LKAHYPAELMAAVLTSEIEKIDKIVRFINEARDMGLTVIPPCINRSQYTFTVSERGEIIY 837 Query: 834 GIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGP 893 G+GA+KGVGE I ++E R K G + L DLC R D KKLNR+ LE LI +G+FD + P Sbjct: 838 GLGAVKGVGEAAINILLEERAKNGDYTSLEDLCRRLDLKKLNRKTLETLIRAGSFDNIEP 897 Query: 894 HRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQP--WPEQVVLD 951 +R AL ++ A+K A+QH + GQ DMFG+ + S W + L Sbjct: 898 NRGALFAAVEQAIKLAEQHHRNRHQGQGDMFGLFGDSSRDQPPSLIMNPEEAWDLRQTLA 957 Query: 952 GERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERG----------KVITAAGLVV 1001 E++TLGL+L+ HPI++ + + G L + + AG+V+ Sbjct: 958 EEKQTLGLFLSAHPIDEARDTLLQISRGRNLAQLQENMENWQRPTRRGDSIEVILAGVVI 1017 Query: 1002 AARVMVTKR-GNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFS 1060 AR MV+K+ GN + T+DDRSGR E+ +F A + Y+ L + D ILI+ G+ ++ + Sbjct: 1018 EARSMVSKKNGNPMIFLTIDDRSGRQEIGVFGKAAEAYKDLCKADNILIIHGKADYNYYK 1077 Query: 1061 GGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQS---LEPHRSGTIPVHL 1117 ++ A + D +AR + + L ++ + D + L+++ LE I + L Sbjct: 1078 EEWRINAETIHDYYDARYELLQKLDFTVNAEALADNIWQTLQETLAPLEDTHGARISITL 1137 Query: 1118 YYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSEQVELEF 1159 +A+ RL A +R+ + L L+ L+ + QV + Sbjct: 1138 QNTSINAQGRLHLPAAYRIDHDNLL--RLQTLLAAPQVRRHY 1177 >UniRef50_Q3AVK2 DNA polymerase III, alpha subunit n=11 Tax=Cyanobacteria RepID=Q3AVK2_SYNS9 Length = 1172 Score = 1244 bits (3219), Expect = 0.0, Method: Composition-based stats. Identities = 438/1181 (37%), Positives = 668/1181 (56%), Gaps = 63/1181 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FV L HSDYS++DG ++ +V++A LGMPA+A+TD + G ++ G +KPI Sbjct: 3 FVPLHNHSDYSLLDGASQLPSMVERAKELGMPAIALTDHGVMYGAIELLKLCKGTDLKPI 62 Query: 66 VGADFNVQCDLLGD------ELTHLTVLAANNTGYQNLTLLISKAYQRGYGAA----GPI 115 +G + V + D + HL VLA N GY+NL L S ++ RG Sbjct: 63 IGNEMYVINGSIDDPQPKKEKRYHLVVLAKNAIGYRNLVKLTSISHLRGMRGRGIFSRAC 122 Query: 116 IDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGR 175 +D+D L +EGLI+ + G++ +++LRG + + +Y++ F + ++LE+ G Sbjct: 123 VDKDLLQRHSEGLIIATACLGGEIPQAILRGRPEVARDVARWYQDVFGEDFYLEIQDHGS 182 Query: 176 PDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYS 235 P++ V++AE + +VATND ++ D +AH+ + + G + D KR R Y+ Sbjct: 183 PEDRIVNSEIVKIAEELDIQLVATNDAHYLTKQDVEAHDALLCVLTGKLISDEKRLR-YT 241 Query: 236 PQQYMRSEEEMCELFADI------PEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTE 289 +Y+++EEEM LF D +A+ NT ++A++ LG+Y +P+FP D T Sbjct: 242 GTEYIKTEEEMGRLFTDHLDPDVVQKAITNTAKVAEKVEDYDILGKYQMPRFPIPDGHTA 301 Query: 290 -DYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFI 348 YL + +GL +RL + + Y +R+ EL+++ QMGFP YFL+V ++I Sbjct: 302 VTYLREVTLQGLRDRL-----ELKSDDPIAENYADRMSHELEIMEQMGFPTYFLVVWDYI 356 Query: 349 QWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCM 408 +++++ +PVGPGRGS AGSLVAYAL IT++DP+ LLFERFLNPER SMPD D DFC+ Sbjct: 357 RFAREQNIPVGPGRGSAAGSLVAYALGITNIDPVSNGLLFERFLNPERKSMPDIDTDFCI 416 Query: 409 EKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG 468 E+R +VI++V + YG D V+QIITF M +KAV++DV RVL PYG DR++KLIP G Sbjct: 417 ERRCEVIDYVTERYGDDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKLIPVVRG 476 Query: 469 MTLA-KAF----EAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKIT 523 KA P+ E Y+ D VK +DMA ++EG + G HA GVVIA + Sbjct: 477 KPAKLKAMIGDESPNPEFREKYQGDPVVKRWVDMAMRIEGTNKTFGVHAAGVVIAADPLD 536 Query: 524 DFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPP 583 PL + +G +TQ+ DVE GL+K DFLGL+ LT+I+ LE++ Sbjct: 537 QLVPLQRNNDG-QVITQYFMEDVESMGLLKMDFLGLKNLTMIDKTLELVEVSSGTR---- 591 Query: 584 LDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPL 643 +D +P D +F +L R + +FQLES GM+ +++ L+P ED+ +++AL+RPGPL Sbjct: 592 IDPDKLPPQDADTFALLARGDLEGIFQLESSGMRQIVRDLKPSSLEDISSILALYRPGPL 651 Query: 644 QSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLG 703 +G++ FI+RKHGRE I + HE L+P+L TYGI++YQEQ+M+IAQ L+GY+LG Sbjct: 652 DAGLIPKFINRKHGREAIDFA-----HEILEPILSETYGIMVYQEQIMRIAQDLAGYSLG 706 Query: 704 GADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAA 763 AD+LRRAMGKKK EM K R +F EGA+K G++ +++ ++FD + FA Y FNKSHS A Sbjct: 707 QADLLRRAMGKKKVSEMQKHRGIFVEGAKKRGVDVKVSDELFDQMVLFAEYCFNKSHSTA 766 Query: 764 YALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHF 823 Y V+YQT +LKAHYP +MAA++T + +KV + C MG++++PPD+N+ L F Sbjct: 767 YGAVTYQTAYLKAHYPVAYMAALLTVNAGAADKVQRYISNCNAMGIEVMPPDLNASLIDF 826 Query: 824 HVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLI 883 N D I++G+ A++ +G+G I +IE+R G FR L DLC R + LNRR LE LI Sbjct: 827 TPNGD-RILFGLSAVRNLGDGAIRRLIESRENDGPFRSLADLCDRLPSSVLNRRGLESLI 885 Query: 884 MSGAFDRLGP--HRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQ-------I 934 GA D + P +RA LM L L A AK GQ ++F ++A E + Sbjct: 886 HCGAMDAMDPNANRAQLMADLDLLLDWASSRAKDRDSGQGNLFDLMAAPAEDDGPTDLSM 945 Query: 935 EQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVI 994 A +P L E++ +G YL+ HP+ Q R + + L + + Sbjct: 946 APKAAPVPDYPPSEKLRLEKDLVGFYLSDHPLKQLTPS-SRLLAPIGLGSLEEQPDKAKV 1004 Query: 995 TAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQV 1054 +A ++ R + T++G+R+ I L+D +G E ++F + + L + L+V V Sbjct: 1005 SAITMITELRQVTTRKGDRMAILQLEDLTGSCEAVVFPKSYARLADHLMAEARLLVWAGV 1064 Query: 1055 SFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDD-QLLNRLRQSLEPHRSGT- 1112 D +++ + ID+ L + L Q +D + ++LR+ L HR Sbjct: 1065 --DRRDERVQLIIDDCRAIDDLTL-----LLVQLPSDQANDIAIQHKLRECLTQHRPERD 1117 Query: 1113 -----IPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRG 1148 +PV D+ +R GA + V + L Sbjct: 1118 ELGVKVPVVAEVCLGDSVRYVRLGAQFCVRDPIAAVQALND 1158 >UniRef50_Q9XDH5 DNA polymerase III subunit alpha n=6 Tax=Bacteria RepID=DPO3A_THEAQ Length = 1220 Score = 1243 bits (3218), Expect = 0.0, Method: Composition-based stats. Identities = 462/1213 (38%), Positives = 675/1213 (55%), Gaps = 90/1213 (7%) Query: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAAL--GMPALAITDFTNLCGLVKFYGAGHG 59 S+ +F HL H+ +S++DG AK L+K PALA+TD NL G V+FY Sbjct: 3 SKLKFAHLHQHTQFSLLDGAAKLQDLLKWVKETTPEDPALAMTDHGNLFGAVEFYKKATA 62 Query: 60 AGIKPIVGADFNVQCDLLGDE---------LTHLTVLAANNTGYQNLTLLISKAYQRGYG 110 G+KPI+G + V + D HLT+LA + TGYQNL L S+AY G+ Sbjct: 63 MGVKPIIGYEAYVAAESRFDRKRGKGLDGGYFHLTLLAKDFTGYQNLVRLASRAYLEGF- 121 Query: 111 AAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170 P IDR+ L E +GLI LSG ++ + +L+ L + + F DR+F+E+ Sbjct: 122 YEKPRIDREILREHAQGLIALSGCLGAEIPQFILQDRLDLAEARLNEDLSIFGDRFFIEI 181 Query: 171 IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230 G P+++ E A GL +VATND ++ D AHE+ +AI TLDDP+R Sbjct: 182 QNHGLPEQKKVNQVLKEFARKYGLGMVATNDGHYVRKEDARAHEVLLAIQSKTTLDDPER 241 Query: 231 PRNYSPQQYMRSEEEMCELFADIP---EALANTVEIAKRCNVTVRLGE---YFLPQFPTG 284 R + Y+++ EEM + + E NTVEIA+ C+V + +G+ Y +P+FP Sbjct: 242 WRFPCDEFYVKTPEEMRAMLPEAEWGDEPFDNTVEIARMCDVDLPIGDKMVYRIPRFPLP 301 Query: 285 DMSTE-DYLVKRAKEGLEERLAF------------------------------------- 306 + TE YL + GL R Sbjct: 302 EGRTEAQYLRELTFLGLLRRYPDRITEAFYREVLRLLGTMPPHGDERALAEALARVEEKA 361 Query: 307 -------LFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVG 359 L P E R R EL VI +MGFPGYFLIV ++I W++ +GV VG Sbjct: 362 WEELRKRLPPLEGVREWTAEAILHRALYELSVIERMGFPGYFLIVQDYINWARGHGVSVG 421 Query: 360 PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVA 419 PGRGS AGSLVAYA+ IT++DPL F LLFERFLNPERVSMPD D DF +RD+VI++V Sbjct: 422 PGRGSAAGSLVAYAVGITNIDPLRFGLLFERFLNPERVSMPDIDTDFSDRERDRVIQYVR 481 Query: 420 DMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMT--LAKAFEA 477 + YG D V+QI TFG++A+KA ++DV RV G P+ + ++KLIP G L +A + Sbjct: 482 ERYGEDKVAQIGTFGSLASKAALKDVARVYGIPHKKAEELAKLIPVQFGKPKPLQEAIQV 541 Query: 478 EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHP 537 P+L E DE ++ +I++A +LEG+ R+A HA GVVIA +TD PL D+EG P Sbjct: 542 VPELRAEMEKDERIRQVIEVAMRLEGLNRHASVHAAGVVIAAEPLTDLVPLMRDQEG-RP 600 Query: 538 VTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSF 597 VTQ+D VE GL+K DFLGLRTLT ++ A ++ + + LD +PLDD K+F Sbjct: 601 VTQYDMGAVEALGLLKMDFLGLRTLTFLDEARRIVKESKGVE----LDYDRLPLDDPKTF 656 Query: 598 DMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHG 657 ++L R ET VFQLES GM ++ L+P ED+IALV+L+RPGP++ + +I R HG Sbjct: 657 ELLSRGETKGVFQLESGGMTATVRGLKPRRLEDIIALVSLYRPGPMEH--IPTYIRRHHG 714 Query: 658 REEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKP 717 +E +SY + + L+P+L+ TYGI +YQEQ+MQIA ++GY+LG AD+LRRAMGKK+ Sbjct: 715 QEPVSYAEFPHAEKYLRPILDETYGIPVYQEQIMQIASQVAGYSLGEADLLRRAMGKKRV 774 Query: 718 EEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAH 777 EEM K R F GA++ G+ E A ++FD++E FA YGFNKSH+AAY+L+SYQT ++KAH Sbjct: 775 EEMQKHRERFVRGAKERGVPEEEANRLFDMLEAFANYGFNKSHAAAYSLLSYQTAYVKAH 834 Query: 778 YPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGA 837 YP EFMAA+++ + +++KV + + +G+ +LPPD+N + F V + EI++G+ A Sbjct: 835 YPVEFMAALLSVERHDSDKVAEYIRDARALGIPVLPPDVNRSGFDFKVVGE-EILFGLSA 893 Query: 838 IKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAA 897 +K VGE AI+E R +GG F+ L D R + +N+R LE L+ +GA D G RA Sbjct: 894 VKNVGEMAARAILEERERGGPFKSLGDFLKRLPEQVVNKRALESLVKAGALDAFG-DRAR 952 Query: 898 LMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETL 957 L+ SL L+ A + + G +F E E P E +L E+E L Sbjct: 953 LLASLEPLLRWAAETRERGRSGLVGLFA------EVEEPPLVEASPLDEITMLRYEKEAL 1006 Query: 958 GLYLTGHPINQY--LKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIG 1015 G+Y++GHP+ +Y L+E+ + + + +G+V T+ G + Sbjct: 1007 GIYVSGHPVLRYPGLREVASCTIEELSEFVRELPGKPKVLLSGMVEEVVRKPTRSGGMMA 1066 Query: 1016 ICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDE 1075 TL D +G LEV++F A + L++D L+V +V L++ A+ V ++E Sbjct: 1067 RFTLSDETGALEVVVFGRAYEGVSPKLKEDIPLLVLAEVEK---GEELRVLAQAVWTLEE 1123 Query: 1076 AREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWR 1135 + + L + + +D++ + RL+ L+ H G++PV+L A Sbjct: 1124 VL-EAPKALEVEVDHALLDEKGVARLKSLLDEH-PGSLPVYLRVLGPFGEALFALRE--- 1178 Query: 1136 VSPSDRLLNDLRG 1148 V + L L Sbjct: 1179 VRVGEEALGLLEA 1191 >UniRef50_A6G5Y5 DNA polymerase III, alpha subunit n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G5Y5_9DELT Length = 1255 Score = 1243 bits (3217), Expect = 0.0, Method: Composition-based stats. Identities = 471/1254 (37%), Positives = 701/1254 (55%), Gaps = 114/1254 (9%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 F HL +H+ YS++DG + L K GM ++A+TD N+ G V+FY G+KP Sbjct: 14 DFAHLHLHTQYSLLDGAIRMNDLCGKVKERGMKSVAMTDHGNMFGAVQFYQQAKAHGVKP 73 Query: 65 IVGADFNVQCDLLGDEL----THLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 I G + + + H+ +LA N GYQNL L+S + G+ P IDR Sbjct: 74 IFGCEAYIADGDAPAKTDRKNYHIVLLAKNEVGYQNLQRLVSYGHLEGF-YYNPRIDRKT 132 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRTGRPDEE 179 L E +EGL+ LS G + R + G+ E + Y + F P YFLEL G +E Sbjct: 133 LREHSEGLVGLSACLGGHISRMITGGDMDGARERIREYADIFEPGSYFLELQPNGMELQE 192 Query: 180 SYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQY 239 +L +P+VATND +++ S+ AHE+ + + G T++D KR ++ + + Sbjct: 193 KVNADLAQLGRDLDVPIVATNDCHYVNQSEAYAHEVLMCMGMGRTINDEKRLKHDCEEFF 252 Query: 240 MRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTE-DYLVKRAKE 298 +++ ++M F PEA+ N IA+ CNV + LG+ LP F + + E +YL K A+E Sbjct: 253 IKTPQQMWGYFERYPEAMHNAARIARMCNVELSLGKPELPDFKLPEGTDEVEYLRKVARE 312 Query: 299 GLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPV 358 GL++R+ L + Y ERLE EL +I M FPGYFLIV +FI+ +K GVPV Sbjct: 313 GLDQRIREL--RALGKAPDTDVYFERLERELGIIINMKFPGYFLIVWDFIKEAKKMGVPV 370 Query: 359 GPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHV 418 GPGRGSGAGSLVAY+++ITD+DP+++DLLFERFLNPERVSMPDFD+DFCM++R++VI++V Sbjct: 371 GPGRGSGAGSLVAYSMRITDIDPMQYDLLFERFLNPERVSMPDFDIDFCMDRREEVIQYV 430 Query: 419 ADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAF--- 475 D YG+ V QI TF ++ A+ ++RDV RV+ + ++K++P P ++L+ Sbjct: 431 TDHYGKKRVGQIATFHSLKARGLLRDVCRVMEKLPAEANELAKMVPEGPKVSLSLCMADP 490 Query: 476 ------------------------EAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKH 511 EA +L EAD VK ++D+ LEG+ R+AG H Sbjct: 491 KAIRAKMKKEPEKAGKLEGKLQIAEAATKLRLRCEADPGVKQIVDIGCSLEGLNRHAGMH 550 Query: 512 AGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEM 571 A G+VI ++T+ P + ++ VTQ+ +DVE AGLVKFDFLGL+TLT+I A++ Sbjct: 551 AAGIVIGNRELTEHVPCFKADDK--IVTQYTMNDVEQAGLVKFDFLGLKTLTVIKHAVDQ 608 Query: 572 INKRRA---------KNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKR 622 IN + P DI IP+DD + + M+ R ETT VFQLES G K L+++ Sbjct: 609 INGLEGPWRLDPTQQGTADKPFDIDTIPMDDAEVYAMISRGETTGVFQLESTGFKKLLQK 668 Query: 623 LQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYG 682 L+PD FED+IA VAL+RPGPL+ GMVD FI+ KHGR +I YP HE L VL TYG Sbjct: 669 LKPDVFEDIIAAVALYRPGPLEGGMVDQFIECKHGRRKIEYP-----HELLADVLRETYG 723 Query: 683 IILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEK-NGINAELA 741 + +YQEQVM AQ+L+G++LGGAD++RRAMGKKK +EM +QR++F EG E N I+A+ A Sbjct: 724 VFVYQEQVMLAAQILAGFSLGGADLMRRAMGKKKVKEMERQRALFVEGCESVNNIDAKKA 783 Query: 742 MKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLV 801 +IFDL++KFAGYGFNKSHSAAY L++YQT +LK HYP FM +MT D D +E VV + Sbjct: 784 NEIFDLIDKFAGYGFNKSHSAAYGLITYQTAYLKHHYPEAFMCGLMTCDKDKSENVVKFI 843 Query: 802 DECWRMGLKILPPDINSGLYHFHVNDDG-------------------------------- 829 E M + +LPPD+N F+V Sbjct: 844 AEARSMDITVLPPDVNESASDFNVVVRDRPELSEEELKKKKQLARKSKKVRRRQAREDSR 903 Query: 830 ------EIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLI 883 I +G+GA++ VG +++I+ AR + G F+ +F+LC R D K++N+R LE L+ Sbjct: 904 PEGKLLAIRFGMGAVRNVGGNAVDSILAAREEEGPFKNIFELCRRVDLKRVNKRTLEGLV 963 Query: 884 MSGAFDRL--GPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASC 941 SGAFD + G HRA ++ ++ A++ + GQ +F + + +E+ Y Sbjct: 964 HSGAFDSVSEGQHRAGVVAAIESAVEQGQSSQRDRESGQGGLFDAFSSDQVYVEE-YPKV 1022 Query: 942 QPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVV 1001 + W + L ER+ LG YLTGHP+++Y ++I+R+ VR+ ++ G+ + G++ Sbjct: 1023 REWAPKQRLLNERDALGFYLTGHPLDRYQQDIDRHAS-VRIGELRKELAGQEVVLGGVIT 1081 Query: 1002 AARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALD-----------KYQQLLE--KDRIL 1048 R + TK G +G L+D+ GR+EV++F + L + + Sbjct: 1082 EMRQVTTKAGKTMGFFQLEDQFGRVEVIVFPRTWATPIDPDEESAPSWGDWLMAHGEDPV 1141 Query: 1049 IVSGQVSFDDFS----GGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQS 1104 V+G++ + K+ +V I + RE + + + L Q+DD+ + L+ Sbjct: 1142 FVTGKLEVEQNDMGEVSRYKILLAKVEPIAKVREARTKKVRLRLRAEQLDDRRILALKHL 1201 Query: 1105 LEPHRSGTIPVHLYYQRADA-RARLRFGATWRVSPSDRLLNDLRGLIGSEQVEL 1157 + HR G + + ++ FG ++V D L L L G EL Sbjct: 1202 VADHR-GQCSMEMSVTVPGRYATQVVFGDEFKVKADDSLFVALERLFGGPVAEL 1254 >UniRef50_D1CB25 DNA polymerase III, alpha subunit n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CB25_THET1 Length = 1180 Score = 1243 bits (3216), Expect = 0.0, Method: Composition-based stats. Identities = 435/1195 (36%), Positives = 656/1195 (54%), Gaps = 73/1195 (6%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS FVHL +HSDYS++DGL K V A A GM A+A+TD + G ++ Y A Sbjct: 1 MSS-DFVHLHLHSDYSLLDGLGKIKDYVSLAKAYGMKAIALTDHGVMYGAIEMYTEALEA 59 Query: 61 GIKPIVGADFNVQCDLLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 GIKPI+G + V D HL VLA + GYQNL L+S A+ GY Sbjct: 60 GIKPIIGCELYVAPRSRHDREKRLDSDYAHLLVLAKDYEGYQNLIKLVSYAFLEGY-YYK 118 Query: 114 PIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIR 172 P ID + L + ++GLI+ S G+V + LL+G E Y + YF+EL Sbjct: 119 PRIDHELLAKYSKGLIVTSSCIGGEVPQLLLQGKDKEARELADKYRSIVGRENYFIELQD 178 Query: 173 TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 ++ +ELA+ +P+VAT DV + D +I + + G + D R R Sbjct: 179 HPFEEQRIANTKLIELAKDLEIPLVATCDVHYPRQEDAAIQDILLCVQTGKQVTDKNRMR 238 Query: 233 NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDY 291 S YMRS +EM + F D PEA+ NT IA+ CN+ + +G++ LP F + + Y Sbjct: 239 MSSDTNYMRSPQEMEQAFRDYPEAIKNTALIAEMCNLQIPMGKWILPHFDVPEGYDLQSY 298 Query: 292 LVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWS 351 L +EGL ++ + + E +RLE EL VIN G+ Y LIV +F+ W+ Sbjct: 299 LRYLCEEGLRQKYSEV----------TQEIRDRLEYELDVINTKGYTAYMLIVQDFVNWA 348 Query: 352 KDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKR 411 + G+ V RGS AGSLV+Y L IT DP+E+ L FERFL R S PD D+DF ++R Sbjct: 349 RSRGIAV-TSRGSAAGSLVSYLLNITTADPIEYKLPFERFLTIHRPSPPDIDMDFEDKRR 407 Query: 412 DQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL 471 ++VIE+V YG + V+QIITFGTM A+A +RDVGR LG Y D I+K+I PG ++ Sbjct: 408 EEVIEYVTSKYGEENVAQIITFGTMEARAAVRDVGRALGISYSDTDTIAKMI--QPGWSI 465 Query: 472 AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCD 531 +A E L + YE DE +K LID+A KLEGVTR+A HA GV+I+ I ++APL D Sbjct: 466 KEALENSLALRQWYERDERIKQLIDVASKLEGVTRHASTHAAGVIISREPIINYAPLQKD 525 Query: 532 EEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPL 591 + G P+ QFD E GL+K DFLGL L+I+ A++ I + R + +++ +PL Sbjct: 526 KNGSRPLVQFDMRMCEKIGLLKMDFLGLANLSILGRAVKTIKQTRGID----IELDKLPL 581 Query: 592 DDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNF 651 DD K++++L ETT VFQLES GM+ IK L+P D+ A++AL+RPGP+ M+ + Sbjct: 582 DDTKTYELLSSGETTGVFQLESAGMRRYIKELKPSNIRDVAAMIALYRPGPMD--MIPTY 639 Query: 652 IDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRA 711 I RKHGRE + Y L+P+L+ +YG+++YQ+ ++ IA ++GYT AD LR+A Sbjct: 640 IARKHGREPVEY-----LVPGLEPILKDSYGVLVYQDDILLIAIEIAGYTWEEADKLRKA 694 Query: 712 MGKKKPEEMAKQRSVFAEGAEKN-GINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQ 770 +GKK EE+ QR F +G +++ G++ E A +++D +E FA YGFNK+H+AAY+LV+YQ Sbjct: 695 VGKKIREELEAQRDKFIKGCQEHGGLSPEKARELWDWMEPFARYGFNKAHAAAYSLVAYQ 754 Query: 771 TLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGE 830 T +LKA+YP+E+M++++T MDN+EKV + EC RMG+++LPP +N F + + Sbjct: 755 TAYLKANYPSEYMSSLLTVGMDNSEKVASGIVECNRMGIRVLPPSVNDSFEEFTLEPQSQ 814 Query: 831 -------IVYGIGAIKGVGEGPIEAIIEARN--KGGYFRELFDLCARTDTKKLNRRVLEK 881 I +G+GA+K VG GPI AI+ AR F+ C D K++N+R LE Sbjct: 815 RPGEPIPIRFGLGAVKNVGSGPISAIVSARESLPDKRFKSFEHFCTVVDFKQINKRALES 874 Query: 882 LIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGV-LAEEPEQIEQSYAS 940 LI +GAFD G HR+ L+ ++ +A+ + +A +GQ +FG + + + Sbjct: 875 LIKAGAFDEFG-HRSQLLAAIDEAIALNQKMQRASDLGQFSLFGDAFSSQDHLPSLTLPE 933 Query: 941 CQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLV 1000 P++ +L E+E LGLYL+ HP+N L + R + ++ G+ + A ++ Sbjct: 934 VDEAPKEQLLAWEKEMLGLYLSEHPLNAVLGK-RRLDSTSLISEISEEMVGQTVRVAAML 992 Query: 1001 VAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFS 1060 V ++ TKR + I L+D++ ++ ++F + +KY+ LL D +L+V+G++ D+ Sbjct: 993 VNPQIRTTKRQQEMLIGKLEDQTSSIDFVVFPEQYEKYRDLLVSDAVLLVTGKL--DERQ 1050 Query: 1061 GGLKMTAREVMDID--------------------EAREKYARGLAISLTDRQIDDQLLNR 1100 ++ V ID A + I + + R Sbjct: 1051 ESFQIVCESVAKIDGNSEDEISQEVESLIEEDSPHPESARAYEIRIRFPVSDDIEVDIER 1110 Query: 1101 LRQS--LEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSE 1153 ++ L G V + + VS S L DL ++GS Sbjct: 1111 MQALYKLLRSHPGDDKVLIQLPVGSRFVVIE-PTNLEVSFSAVLEQDLEKVLGSR 1164 >UniRef50_Q87EY0 DNA polymerase III subunit alpha n=22 Tax=Gammaproteobacteria RepID=DPO3A_XYLFT Length = 1193 Score = 1243 bits (3216), Expect = 0.0, Method: Composition-based stats. Identities = 568/1206 (47%), Positives = 756/1206 (62%), Gaps = 66/1206 (5%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAP--------------LVKKAAALGMPALAITDFTN 46 MS FVHL +H+++S+ D + L+ +A LG+PALA+TD N Sbjct: 1 MSTSSFVHLHIHTEFSLADSTIRVPEKPEQAHPKKAKQANLLSRAVELGLPALAVTDLNN 60 Query: 47 LCGLVKFYGAGHGAGIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQ 106 L L+KFY A GIKPI GAD + +T+L ++ GY NL+ LIS+ + Sbjct: 61 LFALIKFYKAAETVGIKPISGADLLIAEPEHP--PWGMTLLCRDHAGYLNLSQLISRGWL 118 Query: 107 RGYG-AAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDR 165 G+ G + DW+ + ++ L L G R G+ L +G + L ++ +A ++ F D Sbjct: 119 EGHRPEGGVAVHPDWVRDHHKNLFALIG-RHSLAGQLLAKGRADLAEQQLADWQHVFGDG 177 Query: 166 YFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTL 225 LEL RTGR EE + A+++A RG+PV+A+NDVRF+ SDF AHE RV I G L Sbjct: 178 LHLELTRTGRDGEEPFNQFALQVAGIRGIPVIASNDVRFLVQSDFLAHEARVCIASGRML 237 Query: 226 DDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTG- 284 DDPKRPR YS QQY+RS EEM LFADIP+AL NT +A+RCN+ +RLG YFLP +P Sbjct: 238 DDPKRPRTYSEQQYLRSSEEMAALFADIPDALDNTRTLAQRCNIEMRLGTYFLPNYPVPN 297 Query: 285 DMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIV 344 D + + ++ K++ EGLE RL + R +Y RLE EL I +MGF GYFLIV Sbjct: 298 DETLDSWIRKQSHEGLEARL---LKHPLAPGQTREDYVTRLEFELDTIIKMGFSGYFLIV 354 Query: 345 MEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDV 404 +FIQW K G+P+GPGRGSGAGSLVA+AL ITDLDPL ++LLFERFLNPERVSMPDFD+ Sbjct: 355 ADFIQWGKQQGIPIGPGRGSGAGSLVAWALLITDLDPLPYNLLFERFLNPERVSMPDFDI 414 Query: 405 DFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIP 464 DFCME+RD+VI +VA YGR+ VSQIIT+GTMAAKAV+RDVGRVLG PYG VD ++KLIP Sbjct: 415 DFCMERRDEVISYVARKYGRERVSQIITYGTMAAKAVVRDVGRVLGFPYGLVDSVAKLIP 474 Query: 465 PDPGMTLAKAFEA-------EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVI 517 G+TL A +L + Y+A+E+V+ L+++AR+LE +TRNAGKHAGGVVI Sbjct: 475 STLGITLKDAMGEGETNDNASAELIQRYQAEEDVQELLNLARQLEDLTRNAGKHAGGVVI 534 Query: 518 APTKITDFAPLY----CDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMIN 573 AP +T+F PL+ + GK+PVTQFDK+DVE GLVKFDFLGLRTLTII+WA++ IN Sbjct: 535 APNPLTEFCPLFAEHDENGRGKNPVTQFDKNDVEEVGLVKFDFLGLRTLTIIDWAVKAIN 594 Query: 574 KRRAKNGEPPLDIAAIPLDDKKSF-DMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMI 632 KR A+ P+DI A+PLDD ++ D+ T+AVFQ ES GM+ L+K +PD FED+I Sbjct: 595 KRHARACIDPVDITALPLDDIPTYKDVFASGNTSAVFQFESSGMRRLLKDARPDRFEDLI 654 Query: 633 ALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQ 692 ALV+L+RPGP+ + F RKHG +E YPD K +L+ TYGI++YQEQVMQ Sbjct: 655 ALVSLYRPGPMDL--IPEFTARKHGVQETIYPD-----PRTKNILKDTYGIMVYQEQVMQ 707 Query: 693 IAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFA 752 +AQ++ GY+LG AD+LRRAMGKK P EMAK R +F EGA K G++A A +IFDL+EKFA Sbjct: 708 MAQIVGGYSLGSADLLRRAMGKKVPAEMAKHREIFREGAAKGGMDAVKADEIFDLMEKFA 767 Query: 753 GYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKIL 812 GYGFNKSH+AAYALVSYQT WLK HYPAEFMAA +++DMDNT+KVVG +DE + LK+L Sbjct: 768 GYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEARNLNLKVL 827 Query: 813 PPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTK 872 P+IN Y F I YG+GAIKGVG+ EAI++ R G + L D C R + Sbjct: 828 RPNINHSAYMFEATHADTIQYGLGAIKGVGQSVCEAIVKERLHYGPYTSLLDFCTRVTSA 887 Query: 873 KLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPE 932 KLNRR LE +I +GA D LG +RA++M L + +KA +Q ++ GQ +FG Sbjct: 888 KLNRRALEAMIHAGALDELGKNRASVMLQLPEVIKATEQMSRERESGQNSLFGNADPGTP 947 Query: 933 QIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGK 992 I+ C+ WP +L+GERETLGLY +GHP + Y K+++ VG G Sbjct: 948 VIQLDLPECEEWPLTRMLNGERETLGLYFSGHPFDPYRKQVKELVGCDLNTSALERILGS 1007 Query: 993 VIT---------------AAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDK 1037 AGLVV+ R ++G+ L+D GR+E F+DAL + Sbjct: 1008 QQRGNGEKRTWQPEVNTILAGLVVSVR----RKGDSQVFVQLEDGRGRIECSAFSDALAE 1063 Query: 1038 YQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQL 1097 + LL +DRILIV G + D+F+GG + R+ D + YA+ L + + R Sbjct: 1064 FGHLLTRDRILIVKGGLREDEFNGGYSLRIRQCWDYAQLCTDYAQRLLLRVDLR--TSHA 1121 Query: 1098 LNRLRQSLEPHRSGTIPVHLYYQRADAR----ARLRFGATWRVSPSDRLLNDLRGLIGSE 1153 R+ L +R G P+ L L V LL+ L+ Sbjct: 1122 WERIDAILARYRPGNTPLRLDLLLNSTHGPVAGTLDLSGGQSVRIEQSLLDKLQKDPAVS 1181 Query: 1154 QVELEF 1159 ++++++ Sbjct: 1182 KLKVKY 1187 >UniRef50_C7H0A9 DNA polymerase III, subunit alpha n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H0A9_9FIRM Length = 1182 Score = 1243 bits (3216), Expect = 0.0, Method: Composition-based stats. Identities = 431/1205 (35%), Positives = 660/1205 (54%), Gaps = 85/1205 (7%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F HL VHS+YS++DG A+ LV +AA GM +LA+TD + G+V+FY GIKPI Sbjct: 3 FTHLHVHSEYSLLDGAARIRDLVAEAARFGMKSLALTDHGTMFGVVEFYKECKKQGIKPI 62 Query: 66 VGADFNVQ---CDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLI 122 +G + V ++ HL +L N GY+NL L+S A + G+ P ID + + Sbjct: 63 IGCEVYVARGSIEVQEKSPNHLILLVKNEEGYKNLIKLVSIANKEGF-YYKPRIDENLME 121 Query: 123 ELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPD-RYFLELIRTGRPDEESY 181 ++GLI LS G + +L GN + Y + + + ++LE+ G E+ Sbjct: 122 RFSKGLIALSACPAGRIPELILEGNYEEAKKTAIKYRDIYGEGNFYLEIQNHGLDKEQII 181 Query: 182 LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241 +++E G+ +VATND ++ D H++ + I G L D R + S Y++ Sbjct: 182 NRELTKMSEETGIKLVATNDSHYVKKEDAKMHDVLLCIKTGARLSDEVRMKFPSDDFYLK 241 Query: 242 SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTED-YLVKRAKEGL 300 SE+EM LF +A+ NT+E+A++CN LP F + T++ YL K EGL Sbjct: 242 SEDEMRMLFPGQTKAIENTLEVAEKCNFDFDFNSQHLPDFEVPEGETKEGYLRKLCCEGL 301 Query: 301 EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360 E+R + E ERLE EL I+ MG+ YFLIV +FI ++K G+PVGP Sbjct: 302 EKRHKNV----------TNELRERLEFELDTIHNMGYDEYFLIVHDFIHYAKTRGIPVGP 351 Query: 361 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420 GRGS AGSLV+Y L IT +DP++++LLFERFLNPERVSMPD D+DFC ++R +VI++V D Sbjct: 352 GRGSAAGSLVSYCLDITCVDPIKYNLLFERFLNPERVSMPDIDIDFCKDRRQEVIDYVID 411 Query: 421 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQ 480 YG D V+QI+TFGT+ AKA IRDVGR++ YG VDR++K +PP G+TL+ A + Sbjct: 412 KYGDDRVAQIVTFGTLKAKAAIRDVGRIMNAGYGEVDRLAKAVPPGLGVTLSDALKDS-N 470 Query: 481 LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQ 540 E+YE E+ K ++DMA +LEG+ RNAG HA GVVI+ I + P+Y ++G TQ Sbjct: 471 FKELYEEGEDSKEVVDMALQLEGMVRNAGTHAAGVVISKESIDSYVPIYKSDKG--FCTQ 528 Query: 541 FDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDML 600 + +E GL+K DFLGL+ LT+I M+ + ++ DD K ++++ Sbjct: 529 MTMTTIEELGLLKMDFLGLKNLTVIENCKNMVYRNHGI----KINFDDSNYDDSKVYELI 584 Query: 601 QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE 660 T +FQLES GM + +K L+PD ED+IA ++L+RPGP+ S DN+I K + Sbjct: 585 SSGNTEGIFQLESEGMTEFMKDLKPDSIEDIIAGISLYRPGPMDSK--DNYIFNKRHPDR 642 Query: 661 ISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM 720 I Y +H +LKP+L TYG ++YQEQVMQI + L+GY+ G AD++RRAM KKK +EM Sbjct: 643 IKY-----KHPALKPILSLTYGCLVYQEQVMQIVRELAGYSYGRADLVRRAMSKKKADEM 697 Query: 721 AKQRSVF------------------------------AEGAEKNGINAELAMKIFDLVEK 750 AK+R +F EG K GI E+ +IFD +E Sbjct: 698 AKEREIFLFGTENEYWAEENEKSCKISDAPVTDDEEVVEGCVKRGIPKEVGNEIFDEMES 757 Query: 751 FAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLK 810 FA Y FNKSH+AAYA++SYQT +LKAHYP EFMA+++ + N K+ + M ++ Sbjct: 758 FASYAFNKSHAAAYAVISYQTAYLKAHYPVEFMASLLASASGNDGKMARYIKNARDMNIE 817 Query: 811 ILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARN-KGGYFRELFDLCART 869 ILPPD+N F EI++G+ +K VG+ + I++ R KG + ++ Sbjct: 818 ILPPDVNKSGVTFEA-RGNEILFGLADVKNVGDNAADHIVKVRESKGKAYDNMYTFVQDM 876 Query: 870 DTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAE 929 D K+N+ VLE LI +GAF AA ++ DAL+ + K Q +F Sbjct: 877 DISKVNKSVLENLIRAGAFRDFEGTMAANLSIYNDALEQKKKSNKGITADQMSLFEEGEI 936 Query: 930 EPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYV-----GGVRLKD 984 E EQ Q + + + + E+E LG+YLT HP+ +Y + +E + D Sbjct: 937 EGEQFSQKIPNIPEFKDAQKMKFEKEALGMYLTTHPMKEYEQYLEGRITDVLGNINPEAD 996 Query: 985 MHPTER----------GKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDA 1034 E G+ + AGL+ + +VTK+G + L+D +GR+E+++F Sbjct: 997 SDDEEDVASKSSAYREGQRVKLAGLITTVKTIVTKKGEMMAFANLEDMTGRMEMVIFPSI 1056 Query: 1035 LDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQID 1094 +KY+++L++D ++I G++S D + +++ E + + + L ++ Sbjct: 1057 YEKYRRILDEDMVIIAEGKLSSRDGVE-YNLLVSDIILPSEEKTPEDMVVKLRLLEKLNS 1115 Query: 1095 DQLLNRL--RQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGS 1152 ++ ++ +SLE G + LY + + +++ V + L +DL + G Sbjct: 1116 EEANKKIEFLKSLESSEPGAMEFLLYIEDKVYKMKMQ-----GVRLTPELESDLEVIFGK 1170 Query: 1153 EQVEL 1157 E V++ Sbjct: 1171 ENVKV 1175 >UniRef50_B5Y9K9 DNA polymerase III subunit alpha n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y9K9_COPPD Length = 1128 Score = 1242 bits (3214), Expect = 0.0, Method: Composition-based stats. Identities = 447/1177 (37%), Positives = 657/1177 (55%), Gaps = 72/1177 (6%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M+ +FVHL VHS YS++DG+ LV++A LGMPA+AITD GLV+F Sbjct: 1 MAN-QFVHLHVHSAYSLLDGVTLPKKLVQRAKDLGMPAIAITDHGVTYGLVEFVSEAQRL 59 Query: 61 GIKPIVGADFNVQCDLLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 GIKPIVG + HL +L N G++NL +L++KAY G+ Sbjct: 60 GIKPIVGVEGYQAQRDRKKREGNKDKEPFHLVLLVKNALGFRNLNILLTKAYLEGF-YYR 118 Query: 114 PIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIR 172 P D + L + +EGLI S G + R+LL G+ E Y++ F ++LE++ Sbjct: 119 PRFDWELLEQYHEGLIASSACLAGAIPRALLEGDEKKALELAGRYQDIFGKGNFYLEIMD 178 Query: 173 TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 D++ A VEL++ G+P++ TNDV + ++ ++ +AI G TL+DP R + Sbjct: 179 HNLADQQRVNKAIVELSKRTGIPLLVTNDVHYGRPEEYSIQDVLMAIATGATLNDPNRFK 238 Query: 233 NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTE-DY 291 + Q Y++S +EM E F++ PEAL N++ IA+ + + LGE LP+F + TE Y Sbjct: 239 YETDQMYLKSADEMWERFSETPEALLNSLAIAEMVDFMLPLGEQHLPKFSVPEGYTENSY 298 Query: 292 LVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWS 351 L K ++GL +R E +R+E EL VI +MGF GYFLIV ++I W+ Sbjct: 299 LRKLTQDGLLKRYGDNP---------SKEVLDRMEYELSVIEKMGFAGYFLIVQDYINWA 349 Query: 352 KDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKR 411 K G+PVGPGRGS AGSLVAY ITD+DPL++ LLFERFLNPER+SMPD DVDFC +R Sbjct: 350 KSQGIPVGPGRGSAAGSLVAYLTGITDVDPLQYGLLFERFLNPERISMPDIDVDFCARRR 409 Query: 412 DQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL 471 D+V+ +V + YG + V+QI TFGT+AA+A IRDVGRVLG P VDR+SK IP M L Sbjct: 410 DEVLRYVRNKYGEENVAQIATFGTLAARAAIRDVGRVLGVPLALVDRLSKSIPQ--NMEL 467 Query: 472 AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCD 531 A A E + + + ++ ++++A+++EG+ R+A HA GVVIA + ++ L Sbjct: 468 AHA-EKLDDVKNLISQNPDLARVLEIAKQVEGLPRHASTHAAGVVIADKPLYEYVALQAS 526 Query: 532 EE--GKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAI 589 + G + TQ K DVE GL+K DFLGLR +T+I+ AL I +R + +D+ + Sbjct: 527 SDEAGINVTTQLAKDDVEKLGLLKMDFLGLRNMTVISDALRWIKERYGID----VDLNKL 582 Query: 590 PLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVD 649 DD K ++ML ET AVFQLES G + +K L+P FE++IA AL+RPG L SG V Sbjct: 583 SKDDSKVYEMLSAGETVAVFQLESSGFRSFLKDLKPTRFEEIIAAEALYRPGTLGSGGVK 642 Query: 650 NFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLR 709 +++DRKHGRE + Y H+ LKP+LE TYGII+YQEQ+MQIA V++GY+LG AD+LR Sbjct: 643 SYVDRKHGREPVDY-----FHDDLKPILEETYGIIVYQEQIMQIASVIAGYSLGEADVLR 697 Query: 710 RAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSY 769 RA+ KKK EE+ K R F + G E KI++ + FA YGFNKSHSAAYA V+Y Sbjct: 698 RAISKKKEEEILKLREDFVSRGVQRGYARETVEKIYETIVHFAEYGFNKSHSAAYAHVTY 757 Query: 770 QTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDG 829 T WLK++YP E+ AA++ + +DNTEK+ + E R+G+KILPPD+N ++F + Sbjct: 758 YTAWLKSYYPTEYFAALLASFVDNTEKLKVYISEARRLGIKILPPDVNKSEHYFIPEGEN 817 Query: 830 EIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFD 889 EI +G+ IK VG +E I++ R GG F D R + + +N++V E LI +GAFD Sbjct: 818 EIRFGLLGIKNVGLAAVEEILKTRATGGPFSSFQDFLLRVNDRVVNKKVTESLIRAGAFD 877 Query: 890 RLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVV 949 LG R +L+ L + + + + Sbjct: 878 SLG-DRKSLLRQLSTGITTQTLFQIEDTSNDDLSLDPMED-------------------- 916 Query: 950 LDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTK 1009 ERE LGLY+T HP+ +Y+ + L + ++ G V + RV ++ Sbjct: 917 ---EREYLGLYITTHPLERYMAILSNQ-NLTALDSVGE--IDGLVQVGGFVSSTRVRKSR 970 Query: 1010 RGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTARE 1069 N+ TL+D + ++EV + D ++ ++ K I+ +S +V +D ++ A Sbjct: 971 NNNQYMTFTLEDLTSQVEVTVLPQKFDAFKPIISKPGIITLSARVESED--EKSRLIAES 1028 Query: 1070 VM---DIDEAREKYAR-----GLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQR 1121 ++ + E +K L I L Q+ + L +L+ L+ H+ G PV Sbjct: 1029 LISFSPLSELDDKLKELDGKGVLRIVLRSEQVSVEKLKKLKVLLKQHK-GPTPVEFTVHL 1087 Query: 1122 ADARARLRFGATWRVSPSDRLLNDLRGLIGSEQVELE 1158 + R+ ++ VS + L L L V Sbjct: 1088 DGSIYRVLLPNSYWVSFTAELQEALFSLFNPMNVSFR 1124 >UniRef50_D1Y4Y5 DNA polymerase III, alpha subunit n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y4Y5_9BACT Length = 1155 Score = 1241 bits (3212), Expect = 0.0, Method: Composition-based stats. Identities = 455/1173 (38%), Positives = 677/1173 (57%), Gaps = 50/1173 (4%) Query: 1 MSEPR-FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59 MS + FVHL VH++YS++DG + A L K+ A GMPA+A+TD + G V+FY Sbjct: 1 MSAEKNFVHLHVHTEYSLLDGAIRCADLAKRCAEWGMPAVAMTDHGVMYGAVEFYQQCKS 60 Query: 60 AGIKPIVGADFNVQCDLLGDE---LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPII 116 AG+KPI+G + V D + ++ HL +LA N+ GY NL L+S A RG+ P + Sbjct: 61 AGVKPIIGCEMYVSPDGIDNKEKKYNHLLLLAENDEGYHNLIKLVSIANTRGF-YYKPRV 119 Query: 117 DRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRTGR 175 D L + ++GLI S G++ R LL G+ E Y + F + +FLE++ Sbjct: 120 DHQLLAQYSKGLICSSACLAGEIPRFLLEGDEKGALERAQMYRDIFGAESFFLEIMPNQL 179 Query: 176 PDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYS 235 P++ + +E+A P++ATND +++SSD+D HE+ + + + DP R Sbjct: 180 PEQVAVNKMIIEMARKNNFPLLATNDAHYLNSSDYDWHELLLCVGTKKVITDPGRMSFRV 239 Query: 236 PQQYMRSEEEMCELF-ADIPEALANTVEIAKRCNVT--VRLGEYFLPQFPTGDM-STEDY 291 Y RS +EM F ++ P++L NT+ IA+RC+ + G+Y LP+F + + + Y Sbjct: 240 NDFYFRSAQEMWGYFGSEAPDSLENTLRIAERCHFDFALNTGDYLLPKFEIPEGMTLDTY 299 Query: 292 LVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWS 351 L K A+ GL+ERL EY+ RL EL +I QM FPGYFLI+ + I Sbjct: 300 LEKMARSGLKERLGVEV--------IPDEYENRLSYELGIIKQMKFPGYFLIIADVIGAC 351 Query: 352 KDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKR 411 K +G+P+GPGRGS AGSLVAY++KIT+LDP+ F L+FERFLNPERVSMPD D D + R Sbjct: 352 KSHGIPIGPGRGSAAGSLVAYSMKITELDPIRFGLIFERFLNPERVSMPDIDTDVSDKGR 411 Query: 412 DQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL 471 D++I++V D YG + VSQIITFG M +K I+DVGR +G PY V++++ L+P D ++ Sbjct: 412 DRLIKYVVDKYGVENVSQIITFGRMKSKQAIKDVGRAMGMPYADVNKVANLVP-DGAKSI 470 Query: 472 AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCD 531 +A E P L ++ ++D ++ L+ A +EG+ R+ +HA GVVI P +TD P+ Sbjct: 471 KEAVEQTPDLQDLEKSDSQISKLLTSASSMEGLARHCSQHAAGVVITPKPLTDLVPV-RQ 529 Query: 532 EEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPL 591 E TQF V GLVK DFLGL+TL+I+ A+ + + G D+ +PL Sbjct: 530 IEEGQVATQFSMDPVASLGLVKMDFLGLQTLSILEEAVANVKRNGTTLG----DLNRLPL 585 Query: 592 DDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNF 651 DD + + +LQ ++T +FQLES GM+ LIK++QPD F D++A++AL+RPGPL+SGMVD + Sbjct: 586 DDPEVYRLLQNADTLGIFQLESSGMRRLIKKMQPDRFADLVAILALYRPGPLESGMVDQY 645 Query: 652 IDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRA 711 ++ KHG E V + H L+PVL TYG++LYQEQVM+ A L+GYTLGGAD+LRRA Sbjct: 646 VNCKHGEE------VHYLHPLLEPVLNETYGVVLYQEQVMKCASTLAGYTLGGADLLRRA 699 Query: 712 MGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQT 771 MGKKK M + RS+F GA KNGI+AE +IFD++EKFAGYGFNKSHSAAYALV+YQT Sbjct: 700 MGKKKKSVMDEHRSIFINGAAKNGIDAEKGAEIFDIIEKFAGYGFNKSHSAAYALVTYQT 759 Query: 772 LWLKAHYPAEFMAAVMTADMDNTEKV-VGLVDECWRMGLKILPPDINSGLYHFHVNDDGE 830 WLK HYP EFMAA +++ + ++V V E G+ +L PDIN F + E Sbjct: 760 AWLKVHYPKEFMAAYLSSKIGAKKEVMAEYVREVRASGIDVLAPDINQSYADFTATKN-E 818 Query: 831 IVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDR 890 I +G+G + VGE + +I +AR +GG F+ +D R D + + V+E LI +GAFD Sbjct: 819 IRFGLGGVTKVGEAALNSIFKAREEGGPFKGFWDFIVRVDKHSVGKAVIESLIKAGAFDS 878 Query: 891 LGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVL 950 L +R L+ SL + + A + + Q +FG + E + A L Sbjct: 879 LNSNRKQLLTSLDNLFEVASR--RDSQGDQGSLFGDMTSEDQ---PELAEVDDLNITEKL 933 Query: 951 DGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVI-TAAGLVVAARVMVTK 1009 + E+E LG+Y++GHP + + + + R+ D+ + T AGL+ + +TK Sbjct: 934 EMEKEALGMYISGHPFDGFRR-LAAQKANARIADLPYWKSDTTTPTFAGLLSGWQEKMTK 992 Query: 1010 RGNRIGICTLDDRSGRLEVMLFTDA-----LDKYQQLLEKDRILIVSGQVSFDDFSGGLK 1064 RG+ +GI ++DD ++V+ F A + + L + + +V+G+ D G Sbjct: 993 RGDAMGIFSIDDGEDEIKVICFPKARSGKSWLEIKPTLFEGKPYLVTGR---PDDRGERT 1049 Query: 1065 MTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADA 1124 + A +V ++ + + I L+ + + + L+ HR G V L Sbjct: 1050 IIATDVQPLENDASDH-NYVEICLSLDALREIPQKKFLTMLKEHR-GRQTVILKVDDDVE 1107 Query: 1125 RARLRFGATWRVSPSDRLLNDLRGLIGSEQVEL 1157 A + RV+ S L +DL L G + + Sbjct: 1108 TAAIALP-NVRVTSSRALEDDLVALFGRGEARI 1139 >UniRef50_C4ZGM2 DNA polymerase III, alpha subunit n=7 Tax=Bacteria RepID=C4ZGM2_EUBR3 Length = 1181 Score = 1241 bits (3211), Expect = 0.0, Method: Composition-based stats. Identities = 428/1185 (36%), Positives = 650/1185 (54%), Gaps = 56/1185 (4%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS F HL H++YS++DG K VK+ LGM + AITD N+ G+V+FY Sbjct: 16 MS---FCHLHTHTEYSLLDGSNKIKEYVKRVKELGMNSAAITDHGNMYGVVEFYKTAKAN 72 Query: 61 GIKPIVGADFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAA 112 I P++G + V + D HL +LA NNTGY NL ++S + GY Sbjct: 73 DINPVIGCEVYVAPNSRFDRETSHGDDRYYHLILLAENNTGYANLMKIVSIGFTEGY-YY 131 Query: 113 GPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELI 171 P +D + L +EGLI LS G++ R ++RG E Y++ F D +FLEL Sbjct: 132 RPRVDFETLERYHEGLICLSACLAGEIPRYIVRGFYDEAKEIARKYQDCFGKDNFFLELQ 191 Query: 172 RTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRP 231 G D++ + +++ + +V TNDV + SD +AH++ + I G + D R Sbjct: 192 DHGIDDQKLVNQQLLRMSKELEIGLVCTNDVHYTYESDAEAHDVLLCIQTGKKVSDEDRM 251 Query: 232 RNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM--STE 289 R Q +++SEE+M LF EA+ NT +IA RCNVT+ G Y +P++ + S E Sbjct: 252 RYDGGQFFVKSEEQMRALFPYATEAIENTQKIADRCNVTLEFGNYKIPKYEVPEGYDSAE 311 Query: 290 DYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQ 349 +L + ++G E+ E + ++ EL +I MGF Y LIV ++I Sbjct: 312 AFLTELCEKGFREKY---IGCGEYSADELKKIHADMDYELGIIKTMGFIEYILIVWDYIN 368 Query: 350 WSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCME 409 W + + VGPGRGS AGS V Y ITD+DP++++LLFERFLNPERVSMPD DVDF Sbjct: 369 WCRTHDCWVGPGRGSAAGSRVCYCTGITDIDPVKYNLLFERFLNPERVSMPDIDVDFEYA 428 Query: 410 KRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGM 469 +R + IE+V YG D+V+QI+TFGTMAA+ VI+ VG+ L PY DR++K++P + + Sbjct: 429 ERYRAIEYVQQKYGHDSVTQIVTFGTMAARGVIKSVGKALDFPYAETDRLAKMVPQELNI 488 Query: 470 TLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLY 529 T+ KA + P+ IY++D V +IDMA++LEG+ + HA GVVI P +D+ PL Sbjct: 489 TIDKALQMNPEFKGIYDSDARVHEMIDMAKRLEGLPNHTSVHAAGVVIYPGVASDYVPLG 548 Query: 530 CDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAI 589 +G P +++ +E GL+K DFLGLRTLT++ +++ I R + +DI I Sbjct: 549 RANDGS-PTAEYNMVQLEELGLLKMDFLGLRTLTVLKDSVKNIKASRGID----VDIDHI 603 Query: 590 PLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVD 649 +DK + D + +T VFQLES GM+ +K L P FED++A ++L+RPGP+ + Sbjct: 604 DFNDKGTLDFIGTGKTEGVFQLESAGMQSFMKELSPQSFEDIVAGISLYRPGPMD--FIP 661 Query: 650 NFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLR 709 N+I K+ +EISY L+ +LEPTYG I+YQEQVMQI Q L+GYT+G AD +R Sbjct: 662 NYIKGKNNPKEISY-----VTPELESILEPTYGCIVYQEQVMQIVQKLAGYTMGQADNIR 716 Query: 710 RAMGKKKPEEMAKQRSVF--------AEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHS 761 RAM KKK + +R F +G NGI+ + A I+D + FA Y FNKSH+ Sbjct: 717 RAMSKKKQYVIDAERQSFVYGDEERGIKGCVANGIDEKAANSIYDSMVDFAKYAFNKSHA 776 Query: 762 AAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLY 821 AAYA +S QT WLK +YP EFMAA+MT+ +DN+ K + C MG+K+LPPDIN G Sbjct: 777 AAYAKISVQTAWLKNYYPVEFMAALMTSVIDNSAKAAQYLYSCRDMGIKVLPPDINCGQG 836 Query: 822 HFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKK-LNRRVLE 880 F D + YG+ AIK +G I+ IIE R GG +R L D RT K+ +N+R +E Sbjct: 837 EFTAEGDH-VRYGMYAIKSLGRPVIDQIIEERESGGRYRTLSDFIERTCQKELINKRAIE 895 Query: 881 KLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQI-EQSYA 939 LI +GA D L R + + K+ GQ +F ++++E Q E Y Sbjct: 896 NLIKAGACDSLDGTRKQMAMVYASIVDRVQHDKKSTMAGQMSLFDLVSDEDRQSFELKYP 955 Query: 940 SCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKV------ 993 + + + L E+E LG+YL+GHP+ +Y +++ + + + E G V Sbjct: 956 NVGEYDAEEALAYEKEVLGIYLSGHPLEKYAATLKKNITANAIDFVLEEESGAVKIEDNA 1015 Query: 994 -ITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSG 1052 + G++ + TK + T++D +G +EV++F ++YQ+ L+ D + V G Sbjct: 1016 HVVIGGMIATKTIKFTKYNQAMAFITIEDLTGTVEVIIFPRDYERYQRYLQDDAKIFVIG 1075 Query: 1053 QVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGT 1112 + +D G K+ +++ DE + L + + + +RL +++ G Sbjct: 1076 HATVEDEQNG-KIICEKIIPFDEL----PKQLWLRFDTMEDYKKNESRLLETIRESDGGD 1130 Query: 1113 IPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSEQVEL 1157 V +Y AD + + G + V+ ++ L+ L + E ++ Sbjct: 1131 -EVIIYI--ADTKQMKKLGRNYSVNANNELMEQLLEFLDKENAKI 1172 >UniRef50_A7HG87 DNA polymerase III, alpha subunit n=4 Tax=Anaeromyxobacter RepID=A7HG87_ANADF Length = 1217 Score = 1240 bits (3209), Expect = 0.0, Method: Composition-based stats. Identities = 491/1222 (40%), Positives = 703/1222 (57%), Gaps = 89/1222 (7%) Query: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 P FVHL +H+ YS++DG + L+K A GM +A+TD NL G V FY AG+K Sbjct: 2 PDFVHLHLHTLYSLLDGAIRIKDLLKTVQAKGMKTVAVTDHGNLFGAVDFYKKAKDAGVK 61 Query: 64 PIVGADFNVQCDLLGDELT-----HLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDR 118 PI+G + V D + + HL +LA N G+ NL L SKA+ G+ P ID+ Sbjct: 62 PIMGMEAYVAGDKGRHDRSERVGRHLILLAKNAEGWANLRFLSSKAFTEGF-YYDPRIDK 120 Query: 119 DWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRTGRPD 177 L + ++GL+ L+ G+V R +G+ Y + F P +FLE+ G + Sbjct: 121 QLLRDHSKGLVGLTACLAGEVPRLARQGDMDGARRVAREYRDIFEPGSFFLEVQSNGMRE 180 Query: 178 EESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQ 237 + +L G+P+VAT D ++ D AHE+ + I T DPKR R+ + Sbjct: 181 QLDVNAKLAQLGRDEGIPLVATADAHYVSRQDAKAHEVLMCIASNKTFQDPKRLRHETDG 240 Query: 238 QYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKRA 296 +++S ++M + EA+ NT+ IA+ CNV ++LG+ FLP+F D S E+++ K A Sbjct: 241 LFIQSPDDMVAALPEYREAIDNTIRIAEMCNVELQLGKSFLPRFQLPDGVSEEEWIEKLA 300 Query: 297 KEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGV 356 K+GL+ R + R Y +RLE EL VI +MGF GYFLIV +FI W K + + Sbjct: 301 KDGLDARFREIDGKYPH---DRDAYRQRLEMELGVIKKMGFSGYFLIVQDFINWGKQHQI 357 Query: 357 PVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIE 416 PVGPGRGSGAGS+VA++L+ITDLDPL ++LLFERFLNPERVSMPDFDVDFC +RD+VI+ Sbjct: 358 PVGPGRGSGAGSIVAWSLRITDLDPLRWNLLFERFLNPERVSMPDFDVDFCQNRRDEVID 417 Query: 417 HVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP-DPGMTL---- 471 +V + YG+D V QIITFG++ A++VIRDV RV+G P+ D+I+KL+P G T Sbjct: 418 YVREKYGKDNVGQIITFGSLKARSVIRDVVRVMGLPFAEGDKIAKLVPDPVQGKTPPLKE 477 Query: 472 ----AKAFEAEPQLPEIYEA--------DEE-------VKALIDMARKLEGVTRNAGKHA 512 + AEP+L E+Y+ DE+ K L+D+A LEG+ R AG HA Sbjct: 478 LVFGSDKMPAEPRLEELYKKPTVISQWVDEKGVQHTVTTKDLLDIAMSLEGLNRQAGLHA 537 Query: 513 GGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMI 572 GVVIA + D+ P Y D++ + V+QF K +VE AGLVKFDFLGL+TLT+I+ AL M+ Sbjct: 538 AGVVIADKPLWDYVPAYKDDKSEMLVSQFAKEEVEAAGLVKFDFLGLKTLTVIDDALRMV 597 Query: 573 NKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMI 632 + + A IP+DD K ++++ R +T VFQ+ES G +++ +++P FED+I Sbjct: 598 KQNHPE--MKDFTAADIPIDDPKVYELISRGDTAGVFQMESSGFTEMVIKMKPSRFEDVI 655 Query: 633 ALVALFRPGPLQSG------MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILY 686 A AL+RPGPL MVD +IDRKHGRE++ Y H L+PVLEPTYG+I+Y Sbjct: 656 AAGALYRPGPLDQKLEDGRTMVDVYIDRKHGREKVVY-----DHPKLEPVLEPTYGVIVY 710 Query: 687 QEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFD 746 QEQVMQI+QVL+GY+LG AD+LRRAMGKKK E MAK+R F GA K+G++ ++A IFD Sbjct: 711 QEQVMQISQVLAGYSLGQADLLRRAMGKKKAEVMAKERVGFLAGAVKSGVDEKVAGGIFD 770 Query: 747 LVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWR 806 L+EKFA YGFNKSHSAAY L++ QT WLKAHYP EFMAA+++++ NT+KVV + E Sbjct: 771 LMEKFAAYGFNKSHSAAYGLLTVQTAWLKAHYPVEFMAALISSEASNTDKVVLHISEARA 830 Query: 807 MGLKILPPDINSGLYHF----------------HVNDDGEIVYGIGAIKGVGEGPIEAII 850 G+++LPPD+N F + G I +G+GA++GVG+ ++AI+ Sbjct: 831 DGIEVLPPDVNESDKDFGAFGPAESARPSTGPGRAANKGRIRFGLGAVRGVGDSAVQAIL 890 Query: 851 EARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAAD 910 EAR +GG F+ L+DL +R D+KK+N++V+E L+ SGA D G R L + A A Sbjct: 891 EARAEGGPFKTLYDLASRVDSKKINKKVVEALVKSGALDFEGVPRWQLFAGIDSAFAAGA 950 Query: 911 QHAKAEAIGQADMFGVLAEEPEQIEQSYA---------SCQPWPEQVVLDGERETLGLYL 961 A GQA +FG L + + Y + + WPE+V L E+E LG YL Sbjct: 951 SAQADRASGQASLFGALPAAQVEQKPRYPRPGDVVGELTVEEWPERVRLAFEKEALGFYL 1010 Query: 962 TGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDD 1021 TGHP+ Y KE+ RY + KV + M ++G R G TL+D Sbjct: 1011 TGHPLQGYEKEVRRYASTTCAAVANKRHGDKVSVVGVVAAVRERMNKEKGTRFGFLTLED 1070 Query: 1022 RSGRLEVMLFT-----------DALDKYQQLLEKDRILIVSGQVSFDDFSGG---LKMTA 1067 +G +EV+ + ++ + D L+V G+V ++ ++TA Sbjct: 1071 LTGTVEVVCWAARPANGQRPAQKGWTDWEVFCKSDEPLLVHGEVRINNREEENPRAEITA 1130 Query: 1068 REVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARAR 1127 ++ + R++ +A+ + ++ + L+ L H G ++ Sbjct: 1131 LDIEPLALVRKQKTSEIALRIDADRLTKERTTDLKALLGRHPGGCAITVRAVIPEESETT 1190 Query: 1128 LRFGATWRVSPSDRLLNDLRGL 1149 L A RV P D LL R L Sbjct: 1191 LSVAA--RVEPGDELLEAARRL 1210 >UniRef50_C6D8C3 DNA polymerase III, alpha subunit n=5 Tax=Firmicutes RepID=C6D8C3_PAESJ Length = 1220 Score = 1236 bits (3199), Expect = 0.0, Method: Composition-based stats. Identities = 424/1079 (39%), Positives = 628/1079 (58%), Gaps = 30/1079 (2%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL VHS+YS++DG A+ LV +AA GM ALA+TD + G + FY A GIKPI Sbjct: 8 FVHLHVHSEYSLLDGAARIRDLVARAAEQGMKALALTDHGVMYGAIPFYRACLARGIKPI 67 Query: 66 VGADFNVQCDLLGDEL-------THLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDR 118 +G + ++ HL +LA N TGY+NL L+S + G+ P ID Sbjct: 68 IGCEMYFTAGSRFEKGTRKDNPIYHLILLAKNETGYRNLMKLVSIGHLEGFHY-KPRIDP 126 Query: 119 DWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDE 178 + L +EGL+ LS G++ + LL Y+ F D ++LEL G D+ Sbjct: 127 EVLEAHSEGLVCLSSCLHGEISQHLLHDRREEALTAAMRYKRIFGDDFYLELQDHGMLDQ 186 Query: 179 ESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQ 238 + A +ELA G+ + ATNDV ++ D ++ + I G ++DD R + + Q Sbjct: 187 KKVAAAMIELARETGIKLTATNDVHYLTPEDAAVQDVLICIGTGKSVDDTDRMKMGTDQL 246 Query: 239 YMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF-PTGDM-STEDYLVKRA 296 YM+S EEM LF +PEA+ +T EIA +C++ + G LP F P ++ YL + Sbjct: 247 YMKSGEEMELLFRHVPEAIRHTAEIADKCSLELTFGRAALPVFRPVPGGMTSTAYLAELC 306 Query: 297 KEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGV 356 + GL R A P E R + + RL EL VI MGF YFLIV +F++++ + G+ Sbjct: 307 RSGLASRYA-GLPQWSEDPAYREQAEARLAYELSVIENMGFSDYFLIVWDFVRFAHEQGI 365 Query: 357 PVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIE 416 GPGRGS AGSLVAY L+ITD+DPL++ LLFERFLNPER++MPD D+DF E+RD+VI Sbjct: 366 RTGPGRGSSAGSLVAYVLRITDVDPLKYKLLFERFLNPERITMPDIDIDFNDERRDEVIA 425 Query: 417 HVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFE 476 +V+ YG + V+QIITFGTMAAKA +RDVGR + P+ VDR +K+IP +TL +A Sbjct: 426 YVSAKYGDEHVAQIITFGTMAAKAAVRDVGRAMNVPFAEVDRAAKMIPNQLHITLEEALR 485 Query: 477 AEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKH 536 L E + A+I MA K+EG+ R+A HA GVVI+ +TD+ PL + Sbjct: 486 ISEGLREACQRQPRTDAMIKMALKVEGMPRHASTHAAGVVISGGPLTDYVPLQ-AGSERT 544 Query: 537 PVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKS 596 +TQ+ +E GL+K DFLGLRTL+I+ +L + K +D +P +D + Sbjct: 545 ALTQYSMEHLEAVGLLKMDFLGLRTLSIVERSLAWVKGLYGKE----IDFRKVPDNDPDT 600 Query: 597 FDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKH 656 + ML R ET +FQLES G++ ++K ++P FED+++++AL+RPGP++ + N+I KH Sbjct: 601 YAMLGRGETMGIFQLESSGVRRVLKEMKPSEFEDIVSVLALYRPGPME--FIPNYIQGKH 658 Query: 657 GREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKK 716 G + YP H SL+P+L TYGII+YQEQ+MQIA ++G++LG AD+LRRA+ KKK Sbjct: 659 GLAPVKYP-----HPSLEPILSDTYGIIVYQEQIMQIASAMAGFSLGEADLLRRAVSKKK 713 Query: 717 PEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKA 776 E + +QR+ F +G+ G +E A ++D++ +FA YGF ++H+AAY ++++QT WLKA Sbjct: 714 REVLDEQRAHFVKGSVSEGYTSEDANLVYDMIVRFADYGFPRAHAAAYGVLAFQTAWLKA 773 Query: 777 HYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIG 836 HYP FMA+++ + N K VDEC RMG+++LPPD+N F + G + +G+ Sbjct: 774 HYPIPFMASMLASVTGNQRKTAEYVDECRRMGIEVLPPDVNESGVTFTPVE-GAVRFGLA 832 Query: 837 AIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRA 896 AIK VG IEAI + R + F L DLC R D + +N+RVLE LI +GA + L HRA Sbjct: 833 AIKNVGTQAIEAIEKERRER-PFDSLLDLCRRVDLRVVNKRVLESLIQAGALESLPGHRA 891 Query: 897 ALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERET 956 + +L + ++AA + K Q ++FG + +E +P+ L+ ERE Sbjct: 892 QQLAALEETVEAALKWRKEREELQIELFGFDEVQNWDVE--LPDIRPYSTGEQLELEREL 949 Query: 957 LGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGI 1016 LGLYL+GHP++ +++E +G R ++ G VV+ + K+GN +G Sbjct: 950 LGLYLSGHPLDAVEEQLEP-LGLDRFIELGEAAEGAAAFIGARVVSLKPFTNKKGNAMGF 1008 Query: 1017 CTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDE 1075 ++DR R E ++F + L K + I+ V D K+ +V+ I E Sbjct: 1009 IEIEDRVMRAEGVVFPAVWKRCGDRLVKGGLAIIHATVQHQDED--FKLIIEDVVPIQE 1065 Score = 58.7 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 3/92 (3%) Query: 1067 AREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARA 1126 A E+ + + I + + +L +L++ L H G + L+Y+R Sbjct: 1132 AESSERAAPPAERKRQRVYIKIIASREHPDVLEQLKKLLADHH-GQLDTVLFYEREQRS- 1189 Query: 1127 RLRFGATWRVSPSDRLLNDLRGLIGSEQVELE 1158 L T+R PS +L + + L+G V + Sbjct: 1190 -LALSETYRTKPSPQLFSAIEQLLGQGAVIVR 1220 >UniRef50_C3WEY7 DNA polymerase III alpha subunit n=1 Tax=Fusobacterium mortiferum ATCC 9817 RepID=C3WEY7_FUSMR Length = 1138 Score = 1235 bits (3197), Expect = 0.0, Method: Composition-based stats. Identities = 424/1165 (36%), Positives = 680/1165 (58%), Gaps = 41/1165 (3%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 FVHL +H++YS++DG+ K + +A LGM A+AITD NL G ++FY GIKP Sbjct: 4 NFVHLHLHTEYSLLDGVGKIDDYLGRAKELGMQAIAITDHGNLFGALEFYKKARKKGIKP 63 Query: 65 IVGADFNVQCDLLGDEL---THLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL 121 I+G + V + D+ HL +LA +N GY+NL + S+++ RG+ P +D+++L Sbjct: 64 IIGMEAYVCERGMEDKEGRNFHLILLARDNEGYRNLLKISSESFIRGF-YYKPRVDKNFL 122 Query: 122 IELNEGLILLSGGRMGDVGRSLLR-GNSALVDECVAFYEEHFP-DRYFLELIRTGRPDEE 179 E +EGLI LS G++ R +L + + + Y + F + +F+E+ G ++ Sbjct: 123 KEHSEGLIALSACMQGEISRRILDMESEDKISSAIDEYVDIFGKENFFIEVQANGIKEQF 182 Query: 180 SYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQY 239 E+A+ L +VATND +++ + +I + + G L D KR R + + + Sbjct: 183 ELNEKLYEIAKQNNLKLVATNDTHYVNEGEHTLQDILICVQTGAKLSDEKRMRIETEELF 242 Query: 240 MRSEEE-MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGD--MSTEDYLVKRA 296 ++S E+ + +L EA+ NT+ IA+RCNV + G + P + + E +L K Sbjct: 243 LKSREQVLGQLGEKYLEAVDNTIIIAERCNVDIEFGHFKFPDYKIPTCVKTIEAFLRKLV 302 Query: 297 KEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGV 356 GL +R ER+E EL +I +MG+ GYF++V +FI +++ + Sbjct: 303 YLGLSKRYPHGL---------TKSIVERVEYELGIIEKMGYAGYFVVVWDFIDFARRKNI 353 Query: 357 PVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIE 416 P+GPGRGS AGSL+AYAL IT LDPL+++L+FERFLNPER+SMPD D+D C E+R +VI+ Sbjct: 354 PIGPGRGSAAGSLIAYALGITQLDPLKYNLIFERFLNPERISMPDIDIDICQERRQEVID 413 Query: 417 HVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFE 476 +V + YG D V+QIITFGTM A+A IRDVGRVL P +D ++KL+P T+ + E Sbjct: 414 YVIEKYGADKVAQIITFGTMKARAAIRDVGRVLNTPLSKIDAVAKLVPF--NATIKQTLE 471 Query: 477 AEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKH 536 + + Y D E++ +ID++ K+E R+A HA G+VI +TD PLYCD + K Sbjct: 472 GVEEFRKQYLEDREIQKVIDISAKIENKVRHASVHAAGIVITKDPLTDTVPLYCDTKNKV 531 Query: 537 PVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKS 596 TQ+ ++E GL+K DFLGLR LT + ++ I + + + + IPL+ KK Sbjct: 532 VSTQYQMKELEDLGLLKMDFLGLRNLTNLQRTIDYIKEDLGEE----IRLEDIPLNSKKV 587 Query: 597 FDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKH 656 +++L R +T+ VFQ+ES G++ ++ +L+PD FED+IAL+AL+RPGPL SGMVD+FI+ K+ Sbjct: 588 YELLSRGDTSGVFQMESVGIRKILVKLKPDKFEDIIALLALYRPGPLGSGMVDDFINGKN 647 Query: 657 GREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKK 716 G EI YP H SL+ L+ TYG+ILYQEQVM+IA +++GY+LG AD+LRRAMGKK Sbjct: 648 GITEIKYP-----HPSLEQTLKETYGVILYQEQVMKIANIMAGYSLGEADLLRRAMGKKN 702 Query: 717 PEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKA 776 + M + R F + +NG + E A+++F+L++KFAGYGFNKSHSAAYAL++Y T + KA Sbjct: 703 VQIMEENREKFITRSIENGYSEEKALEMFELIDKFAGYGFNKSHSAAYALIAYWTAYFKA 762 Query: 777 HYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIG 836 HY + AA+MT++M + E + VD+ LK+ PD+N F V+ DG IV+ + Sbjct: 763 HYMKHYYAALMTSEMAHIEDIAYYVDDAKVHNLKLHLPDVNRATSKFIVDKDG-IVFSLA 821 Query: 837 AIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRA 896 AIK VGEG E I+E N+ G ++ L D RT LN++ LE LI++GA D L +R Sbjct: 822 AIKNVGEGVSEKILEEYNENGEYKNLEDFVVRTKKYGLNKKALESLILAGALDGLPGNRR 881 Query: 897 ALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERET 956 S+ + A++ K + I Q ++FG + + + +L E+E Sbjct: 882 QKFESVDKIIDYANRKLKEDDIQQMNLFG--EAKSSLGVFTLPQVTEYSLDELLSKEKEY 939 Query: 957 LGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKR-GNRIG 1015 LG Y + HP++ Y + I+ + + ++ + +++ G++ + +VTK G +G Sbjct: 940 LGFYFSAHPLDSYRRLIKVFR-LSPINEIKEEKTTQILKTCGILRDVKKIVTKNSGQIMG 998 Query: 1016 ICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSG--GLKMTAREVMDI 1073 + L+D ++ +LF ++Y +L + + + + G + D F G K+ R++ + Sbjct: 999 VFELEDYYDKISCVLFPKDYERYTHILLEGKPVYIEGSIQIDYFKGTENKKLIVRKLKFL 1058 Query: 1074 DEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGAT 1133 D+ + L I + + D + +RL++ L G PV + + + + + Sbjct: 1059 DDIVREKNLKLYILMVEE--DREKFSRLKEILNK-SVGETPVFFAIKDKNHKEIKK--SK 1113 Query: 1134 WRVSPSDRLLNDLRGLIGSEQVELE 1158 + ++P L+++ L+G E+V ++ Sbjct: 1114 YNITPDKIFLDEIVELMGEERVTIK 1138 >UniRef50_A9GWC5 DNA polymerase III, alpha subunit n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GWC5_SORC5 Length = 1212 Score = 1233 bits (3191), Expect = 0.0, Method: Composition-based stats. Identities = 491/1224 (40%), Positives = 700/1224 (57%), Gaps = 78/1224 (6%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M+ F+HL VHS YS++DG + L +A +LGM A+A+TD N+ G ++ Y A Sbjct: 1 MTAE-FIHLHVHSQYSLLDGSLRVKDLAARAKSLGMRAVALTDHGNMFGAIQHYKACKDQ 59 Query: 61 GIKPIVGADFNV------------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRG 108 GI I+G + NV + + + HL +LAA+ GY+NL ++S+ + Sbjct: 60 GIGAIIGCEVNVARSWGTAAGQVSRSGVDETPVDHLVLLAASEEGYKNLVRIVSQGHVDP 119 Query: 109 YGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYF 167 P + D + + N GLI L+G G V + +L E ++ + F P + Sbjct: 120 ASGLAPSVRLDTVAQHNAGLIGLTGCMGGVVAQRILEQGEGEGREALSRLRDCFQPGSLY 179 Query: 168 LELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDD 227 +EL G ++ A GLP+VATND F D + I T + Sbjct: 180 VELQDHGLVEQSVLNGILARAAGDLGLPLVATNDAHFGAREDGEGQLYLSCIAANRTFAE 239 Query: 228 PKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCN-VTVRLGEYFLPQFPTGDM 286 + S + +++ +EM LF D P+A+ +T+EIA+RC+ + ++LG+ LP FP Sbjct: 240 ASAAHHGSFEMFLKPADEMMHLFRDHPQAVRSTLEIAERCSTLKLKLGKPMLPTFPLPSG 299 Query: 287 --STEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIV 344 + Y A +GL +RLA + + R Y RL+ EL VI QM FPGYFLIV Sbjct: 300 FADSASYFRHVAHDGLTKRLAQIA--QTGRKVDEATYRARLDVELNVIVQMDFPGYFLIV 357 Query: 345 MEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDV 404 +FI+++KD+G+PVGPGRGSGAGSLVAYA++ITDLDPL ++LLFERFLNPERVSMPDFDV Sbjct: 358 WDFIKYAKDHGIPVGPGRGSGAGSLVAYAMEITDLDPLPYNLLFERFLNPERVSMPDFDV 417 Query: 405 DFCMEKRDQVIEHVADMYGRD----AVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIS 460 DFCM++RD+VI +V Y ++ +V QI TF + A++VI+DV R + P +I+ Sbjct: 418 DFCMDRRDEVISYVTKKYSKEADKPSVGQIATFHELKARSVIKDVARAMAFPANEAQKIA 477 Query: 461 KLIPPDPG---MTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVI 517 LIP T+ +A E EP+L + E+D V L+ A+KLEG+TR+AG HA GVVI Sbjct: 478 SLIPQKSPGIMYTIPEALEIEPKLKALKESDPTVAELLKQAQKLEGLTRHAGMHAAGVVI 537 Query: 518 APTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRR- 576 + + D P C + G+ VTQ+ K D E AGLVKFDFLGL+TLT+I+ A+ ++N R Sbjct: 538 SEGPLWDHVP--CFKNGEQLVTQYYKDDAELAGLVKFDFLGLKTLTVIDIAVRLVNARPD 595 Query: 577 -AKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALV 635 A D+ +PLDD ++ +LQ ETT VFQLES GM+ L K L+PD FED++A V Sbjct: 596 LAAKEGKRFDVNTVPLDDTATYALLQSGETTGVFQLESSGMQQLFKDLKPDAFEDIVAAV 655 Query: 636 ALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQ 695 AL+RPGPL +GMV +F+D KHGR+ I H + +L+PTYG+I+YQEQVMQIAQ Sbjct: 656 ALYRPGPLGTGMVKDFVDCKHGRKPIE-----KMHPLVDELLQPTYGVIVYQEQVMQIAQ 710 Query: 696 VLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYG 755 L+GYTLGGAD+LRRAMGKKKPEEMAKQ++ F +G+ KNG+ AE A +IF L+E FAGYG Sbjct: 711 KLAGYTLGGADLLRRAMGKKKPEEMAKQKATFVDGSLKNGVKAEDAERIFGLLEYFAGYG 770 Query: 756 FNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPD 815 FNKSHSAAYAL++YQT +LKAHYP EF+ A+MTAD D EKVV ++ E G++ILPP+ Sbjct: 771 FNKSHSAAYALLTYQTAYLKAHYPVEFLCALMTADRDKIEKVVRIIAEGRAWGVEILPPE 830 Query: 816 INSGLYHFHVN-------------------------DDGEIVYGIGAIKGVGEGPIEAII 850 IN F V D +I +G+GAI+GVGE +EAI+ Sbjct: 831 INESKTDFTVVYSAKPATNGKRVAGTRRGGSRVRDPYDPKIRFGMGAIRGVGESALEAIL 890 Query: 851 EARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRL----GPHRAALMNSLGDAL 906 EAR+ GG F +LFD R D +++N+ V E L+ GAFD G RA + AL Sbjct: 891 EARDAGGVFADLFDFAERVDPRRVNKGVFEALVQCGAFDASLHARGISRARAFAGIDRAL 950 Query: 907 KAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPI 966 + + +K Q +F +A + E Y + + W + L E+++LG Y++GHP+ Sbjct: 951 ERSRSASKERNSAQIGLFAAVASKSEVRLDDYPTAEDWDLRETLSREKQSLGFYVSGHPL 1010 Query: 967 NQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTK-RGNRIGICTLDDRSGR 1025 ++Y ++ R+ + + + + G+V R + K G +I L+D +GR Sbjct: 1011 DRYGVDLNRF-DVTAVSALAGMDAWARVRVGGMVEGYRERIFKGGGGKIAFFVLEDTTGR 1069 Query: 1026 LEVMLFTDALDKYQQLLEKDRILIVSGQVS----------FDDFSGGLKMTAREVMDIDE 1075 +EV + ++ Y LL + +++SG++S + + EV + + Sbjct: 1070 VEVKVREKQIESYADLLNRGEPVLISGKISFPMVDEGAEEAEAAPREPTLLLDEVQPLAD 1129 Query: 1076 AREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADA-RARLRFGATW 1134 A R +AI+L R + ++RL L G PV L Q D A L G Sbjct: 1130 AILAQTRSVAITLKSRSARREHIDRLGALLRA-SPGVCPVQLVIQLDDGAEAVLSLGRDL 1188 Query: 1135 RVSPSDRLLNDLRGLIGSEQVELE 1158 RV P+D +L L L G + EL Sbjct: 1189 RVEPNDAMLGRLEKLFGEKVAELR 1212 >UniRef50_Q9JVX8 DNA polymerase III subunit alpha n=201 Tax=cellular organisms RepID=DPO3A_NEIMA Length = 1144 Score = 1233 bits (3191), Expect = 0.0, Method: Composition-based stats. Identities = 557/1167 (47%), Positives = 746/1167 (63%), Gaps = 31/1167 (2%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M+EP ++ LR+H+++S+ DG+ + L+ KA G+PAL I+D N GLVKFY A A Sbjct: 1 MTEPTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSA 60 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA-AGPIIDRD 119 GIKPI AD + D+ ++ N+ GY L+ L++ AY ++ + Sbjct: 61 GIKPIGAADVRIGNPDAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKDRNVHHAELNPE 120 Query: 120 WLIE-LNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRT-GRPD 177 WL N GLI LSG G+VG +LL GN Y FPD ++LEL R RP+ Sbjct: 121 WLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQRLPERPE 180 Query: 178 EESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQ 237 E+ + +V+LAE GLPVVAT+ +F+ DF+AHE RV I G+ L D KRPR+++P Sbjct: 181 WEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKRPRDFTPS 240 Query: 238 QYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKRA 296 Q+ E M E F+D+PEAL NTVEIAKRCN+ + LG+ FLP FPT D S +DYLVK + Sbjct: 241 QFFIPPETMAERFSDLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLDDYLVKLS 300 Query: 297 KEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGV 356 EGL+ER+ L+PDE ER + PEY ERL+ EL +I QM FPGYFLIV +FI W+K +G Sbjct: 301 NEGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGC 360 Query: 357 PVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIE 416 PVGPGRGSGAGSLVAY+LKITDLDPL++ LLFERFLNPERVSMPDFDVDFC R +VIE Sbjct: 361 PVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQANRGRVIE 420 Query: 417 HVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGM--TLAKA 474 +V + YG +AVSQI+TFGTM++KAVIRDVGRVL P+ D++SKLIP + L A Sbjct: 421 YVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSKLIPLEANKPLGLDDA 480 Query: 475 FEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEG 534 +AEPQ+ E+ EA EE LI +A+KLE +TR G HAGGV+IAP KI+D++P+Y +E Sbjct: 481 MKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADES 539 Query: 535 KHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDK 594 PV+ +DK DVE GLVKFDFLGLR LTII A I +D+ IPLDD+ Sbjct: 540 ASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGD----IVDVGTIPLDDQ 595 Query: 595 KSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDR 654 ++ + + + TTAVFQ ES GMK ++K FE++IA V+L+RPGP+ + +F+ R Sbjct: 596 TAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMD--NIPDFVAR 653 Query: 655 KHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK 714 G+E Q+ H L+ +L PTYGI++YQEQVMQ AQ++ GY+LGGAD+LRRAMGK Sbjct: 654 MKGQE------FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGK 707 Query: 715 KKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWL 774 KKPEEM K R +FAEGA K GI+ E + +IF+ +EKFAGYGFNKSH+AAYAL+SYQT WL Sbjct: 708 KKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWL 767 Query: 775 KAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYG 834 KAHYPAEFMAA M++++DNT+++ D+C G++ LPPDIN Y F D +I Y Sbjct: 768 KAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMKIRYA 827 Query: 835 IGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPH 894 +GAIKG GE +E+I AR GG F L D C R + +NRR LE LI GAFD + P+ Sbjct: 828 LGAIKGTGEAAVESITSARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPN 887 Query: 895 RAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGER 954 RA L+ ++ A+ AD KA Q +F ++ + E W E L E+ Sbjct: 888 RAMLLANIDLAMNNAD--QKAANANQGGLFDMMEDAIE--PVRLIDAPMWSESEKLAEEK 943 Query: 955 ETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRI 1014 +G YL+GHP Y +E+ R + +L + P + + AG V A R M+ KRG I Sbjct: 944 TVIGFYLSGHPFGPYAQEV-RQIAPQKLSKLKPQDS---VRLAGFVTAVRTMMGKRGK-I 998 Query: 1015 GICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSG--GLKMTAREVMD 1072 +L+D SG++E+M+ L+ L+ D++LI+ +VS DD+ G GL++ A +VM Sbjct: 999 AFVSLEDLSGQVEIMVGGQTLENCADCLKADQVLIIESKVSRDDYGGGDGLRILANQVMT 1058 Query: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGA 1132 + ARE+YAR L+++L +L+ L P IP+ L Y A RL+ Sbjct: 1059 LQTARERYARSLSLALAPHHDIGELVQLLAAHQLPDTP-RIPLQLSYANEKASGRLQVPP 1117 Query: 1133 TWRVSPSDRLLNDLRGLIGSEQVELEF 1159 W V+PS L +L L+GS V + + Sbjct: 1118 KWTVTPSSALFGELETLLGSRSVRVNW 1144 >UniRef50_A5GTL9 DNA polymerase III alpha subunit n=20 Tax=cellular organisms RepID=A5GTL9_SYNR3 Length = 1179 Score = 1232 bits (3189), Expect = 0.0, Method: Composition-based stats. Identities = 444/1173 (37%), Positives = 666/1173 (56%), Gaps = 65/1173 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FV L HSDYS++DG + +V++A LGMPA+A+TD + G ++ AGIKPI Sbjct: 7 FVPLHNHSDYSLLDGATQLPAMVQRAVDLGMPAVALTDHGVMYGAIELLKLCSKAGIKPI 66 Query: 66 VGADFNVQCDLLGD------ELTHLTVLAANNTGYQNLTLLISKAYQRGYGAA----GPI 115 +G + V + D HL VLA NN GY+NL L S ++ RG Sbjct: 67 IGNEMYVVNGSIDDPQPKKERRYHLVVLAKNNVGYRNLVKLTSISHLRGMRGRGIFARAC 126 Query: 116 IDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGR 175 ID+ L + +EGLI+ + G++ +++LRG + + ++Y + D ++LE+ G Sbjct: 127 IDKHLLQQYSEGLIVATACLGGEIPQAILRGRMDVARQVASWYRDLLGDDFYLEIQDHGS 186 Query: 176 PDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYS 235 P++ + L+ G+ ++ATND ++ D +AH+ + + G L D KR R Y+ Sbjct: 187 PEDRIVNTGLLTLSRELGIQLIATNDAHYLSRDDVEAHDALLCVLTGKLLSDEKRLR-YT 245 Query: 236 PQQYMRSEEEMCELFADI------PEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTE 289 +Y++S EEM LF D +AL NT+ +A++ LG Y +P+FP + T Sbjct: 246 GTEYIKSREEMERLFVDHLPAEVVQQALDNTMSVAEKVEDYDILGRYQMPRFPIPEGHTP 305 Query: 290 -DYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFI 348 YL + ++GL +RL + Y ER+ EL+++ QMGFP YFL+V ++I Sbjct: 306 VSYLHEVTEQGLRQRL-----QLDADSSIDELYGERMRHELKIMEQMGFPTYFLVVWDYI 360 Query: 349 QWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCM 408 ++++DNG+PVGPGRGS AGSLVAYAL IT++DP+ LLFERFLNPER SMPD D DFC+ Sbjct: 361 RFARDNGIPVGPGRGSAAGSLVAYALGITNIDPVSNGLLFERFLNPERKSMPDIDTDFCI 420 Query: 409 EKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG 468 +R +VI++V + YG D V+QIITF M +KAV++DV RVL PYG DR++KLIP G Sbjct: 421 ARRSEVIDYVTERYGDDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKLIPVVRG 480 Query: 469 MTLAKAF-----EAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKIT 523 A EP+ + YE+D +VK +DMAR++EG + G HA GVVIA + Sbjct: 481 KPAKLAQMISEDSPEPEFRQKYESDPQVKRWVDMARRIEGTNKTFGVHAAGVVIAADPLD 540 Query: 524 DFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPP 583 + PL + +G +TQ+ DVE GL+K DFLGL+ LT+I LE+++ Sbjct: 541 ELVPLQRNNDG-QVITQYFMEDVESMGLLKMDFLGLKNLTMIEKTLELVSAEHGDRP--- 596 Query: 584 LDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPL 643 D +P DD +++ +L R + +FQLES GM+ +++ L+P ED+ +++AL+RPGPL Sbjct: 597 -DPDQLPADDPETYQLLARGDLEGIFQLESTGMRQIVRDLKPSSLEDISSILALYRPGPL 655 Query: 644 QSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLG 703 +G++ FI+RKHGRE I + D + L+P+L+ TYGI++YQEQ+M+IAQ L+GY+LG Sbjct: 656 DAGLIPKFINRKHGREAIEFADAK-----LQPILQETYGIMVYQEQIMRIAQDLAGYSLG 710 Query: 704 GADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAA 763 AD+LRRAMGKKK EM K R +F EGA + G++A++A ++FD + FA Y FNKSHS A Sbjct: 711 EADLLRRAMGKKKVSEMQKHRGIFVEGASQRGVDAKVADELFDQMVLFAEYCFNKSHSTA 770 Query: 764 YALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHF 823 Y V+YQT +LKAHYP +MAA++T + TEKV + MG+ +LPPD+N F Sbjct: 771 YGAVTYQTAYLKAHYPVAYMAALLTVNAGVTEKVQRYIANSNAMGIAVLPPDVNRSGIDF 830 Query: 824 HVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCART-DTKKLNRRVLEKL 882 I++G+ A++ +G+G I A+I +R G F L +LC R +LNRR LE L Sbjct: 831 TPVGQ-RILFGLSAVRNLGDGAIHALIASRQSDGPFTSLAELCDRMAGIGQLNRRSLESL 889 Query: 883 IMSGAFDRLGP--HRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEP--------E 932 I SGA D L P +RA LM L L A A+ A GQ ++ +L Sbjct: 890 IHSGALDALEPDGNRAQLMADLDLLLDWATARARDRASGQGNLLDLLGGGSEAEAASATP 949 Query: 933 QIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGK 992 AS + L E+E +G YL+ HP+ Q R + V L + + Sbjct: 950 ASAPKAASVPDYAPTEKLRLEKELVGFYLSDHPLKQLQDT-RRLLMPVGLGSLSEQSDRQ 1008 Query: 993 VITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSG 1052 ++ +V RV+ T++G+R+ I ++D +G E ++F + L D L++ G Sbjct: 1009 RVSTLVMVPEMRVVTTRKGDRMAILQIEDLTGSAEAVVFPKTYARLSDHLMVDARLLLWG 1068 Query: 1053 QVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLT-DRQIDDQLLNRLRQSLEPHR-- 1109 QV D +++ +V ID+ + + L + D + ++LR+ L+ HR Sbjct: 1069 QV--DRRDDRVQLIVDDVSLIDQLDL-----VVVRLDGPQAADITVQHQLRECLQQHRID 1121 Query: 1110 ----SGTIPVHLYYQRADARARLRFGATWRVSP 1138 +PV Q A+ R +R G + V+ Sbjct: 1122 PEILGSRVPVVAEVQAANQRCFVRLGHQFCVND 1154 >UniRef50_O34623 DNA polymerase III subunit alpha n=111 Tax=Bacteria RepID=DPO3A_BACSU Length = 1115 Score = 1232 bits (3189), Expect = 0.0, Method: Composition-based stats. Identities = 426/1160 (36%), Positives = 647/1160 (55%), Gaps = 49/1160 (4%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS FVHL+VHS YS+++ A LV +A LG +LA+TD + G ++FY A Sbjct: 1 MS---FVHLQVHSGYSLLNSAAAVEELVSEADRLGYASLALTDDHVMYGAIQFYKACKAR 57 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 GI PI+G +V D E L +LA +NTGYQNL + S + G P W Sbjct: 58 GINPIIGLTASVFTDDSELEAYPLVLLAKSNTGYQNLLKISSVLQSKSKGGLKP----KW 113 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRTGRPDEE 179 L EG+I ++ G G + L G + ++ F ++ + Sbjct: 114 LHSYREGIIAITPGEKGYIETLLEGGLFEQAAQASLEFQSIFGKGAFYFSYQP--FKGNQ 171 Query: 180 SYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQY 239 ++L+E G+PV AT DV +I D A+ AI G L D P P Sbjct: 172 VLSEQILKLSEETGIPVTATGDVHYIRKEDKAAYRCLKAIKAGEKLTDA--PAEDLPDLD 229 Query: 240 MRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMS-TEDYLVKRAKE 298 ++ EEM ++ + PEAL +VEIA++C V V LG+ LP FPT D + +DYL E Sbjct: 230 LKPLEEMQNIYREHPEALQASVEIAEQCRVDVSLGQTRLPSFPTPDGTSADDYLTDICME 289 Query: 299 GLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPV 358 GL R Y RL+ EL VI +M F YFLIV +F++ + + G+ Sbjct: 290 GLRSRFGKP----------DERYLRRLQYELDVIKRMKFSDYFLIVWDFMKHAHEKGIVT 339 Query: 359 GPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHV 418 GPGRGS AGSLVAY L ITD+DP++ LLFERFLNPERVSMPD D+DF +RD+VI++V Sbjct: 340 GPGRGSAAGSLVAYVLYITDVDPIKHHLLFERFLNPERVSMPDIDIDFPDTRRDEVIQYV 399 Query: 419 ADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAE 478 YG V+QIITFGT+AAKA +RDVGRV G D+++KLIP PGMTL +A + Sbjct: 400 QQKYGAMHVAQIITFGTLAAKAALRDVGRVFGVSPKEADQLAKLIPSRPGMTLDEARQQS 459 Query: 479 PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538 PQL + ++ + +ARK+EG+ R+A HA GVV++ +TD PL EG + Sbjct: 460 PQLDKRLRESSLLQQVYSIARKIEGLPRHASTHAAGVVLSEEPLTDVVPLQEGHEG-IYL 518 Query: 539 TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598 TQ+ +E GL+K DFLGLR LT+I MI K +D+++I D K+F Sbjct: 519 TQYAMDHLEDLGLLKMDFLGLRNLTLIESITSMIEK----EENIKIDLSSISYSDDKTFS 574 Query: 599 MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658 +L + +TT +FQLES GM+ ++KRL+P ED++A+ AL+RPGP++ + FIDRKHGR Sbjct: 575 LLSKGDTTGIFQLESAGMRSVLKRLKPSGLEDIVAVNALYRPGPME--NIPLFIDRKHGR 632 Query: 659 EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718 + YP HE L+ +LE TYG+I+YQEQ+M IA ++G++LG AD+LRRA+ KKK E Sbjct: 633 APVHYP-----HEDLRSILEDTYGVIVYQEQIMMIASRMAGFSLGEADLLRRAVSKKKKE 687 Query: 719 EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778 + ++RS F EG K + + A +++DL+ KFA YGFN+SH+ AY+++ Q +LKAHY Sbjct: 688 ILDRERSHFVEGCLKKEYSVDTANEVYDLIVKFANYGFNRSHAVAYSMIGCQLAYLKAHY 747 Query: 779 PAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAI 838 P FM ++T+ + N +K+ + E G++ILPP +N + F V +G + Y + AI Sbjct: 748 PLYFMCGLLTSVIGNEDKISQYLYEAKGSGIRILPPSVNKSSFPFTVE-NGSVRYSLRAI 806 Query: 839 KGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAAL 898 K VG ++ I +AR + F +LFD C R +K +NR++LE LI SGA D G +RA L Sbjct: 807 KSVGVSAVKDIYKARKE-KPFEDLFDFCFRVPSKSVNRKMLEALIFSGAMDEFGQNRATL 865 Query: 899 MNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLG 958 + S+ AL+ A+ A + D G+ +E I+ Y + P +L E+ETLG Sbjct: 866 LASIDVALEHAELFAADD-----DQMGLFLDESFSIKPKYVETEELPLVDLLAFEKETLG 920 Query: 959 LYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICT 1018 +Y + HP++ + K++ L+ + ++ L+ + + TK G + T Sbjct: 921 IYFSNHPLSAFRKQLTAQGAVSILQ--AQRAVKRQLSLGVLLSKIKTIRTKTGQNMAFLT 978 Query: 1019 LDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEARE 1078 L D +G +E ++F + + +L + +L +G+ ++ +++ Sbjct: 979 LSDETGEMEAVVFPEQFRQLSPVLREGALLFTAGKCEV--RQDKIQFIMSRAELLEDMDA 1036 Query: 1079 KYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSP 1138 + A + I + Q ++L ++++ L H+ G V+LYY+R + ++ ++ ++ Sbjct: 1037 EKAPSVYIKIESSQHSQEILAKIKRILLEHK-GETGVYLYYER--QKQTIKLPESFHINA 1093 Query: 1139 SDRLLNDLRGLIGSEQVELE 1158 ++L L+ L+G + V L+ Sbjct: 1094 DHQVLYRLKELLGQKNVVLK 1113 >UniRef50_Q055U5 DNA-directed DNA polymerase, alpha subunit n=6 Tax=Leptospira RepID=Q055U5_LEPBL Length = 1176 Score = 1231 bits (3185), Expect = 0.0, Method: Composition-based stats. Identities = 411/1175 (34%), Positives = 672/1175 (57%), Gaps = 48/1175 (4%) Query: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 F HL +H++YSM+DG + L++ GM ++A+TD N+ G V+FY GIK Sbjct: 6 QDFAHLHLHTNYSMLDGAIRIKELMQHVKENGMSSVAMTDHGNMFGAVEFYNEATKQGIK 65 Query: 64 PIVGADFNVQCDLLGD---------ELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGP 114 PI+G++F V + + HL +LA N GY+NL L SK+Y G+ Sbjct: 66 PIIGSEFYVSPNRKQETEMVKIADGSAYHLILLAKNEEGYKNLIRLSSKSYTEGF-YKKA 124 Query: 115 IIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRT 173 ID D L + N GL+ L+ G+V R +L G + E F + +++E+ Sbjct: 125 RIDYDLLAQHNGGLVCLTACLAGEVNRKILEGKIDESFQLAGKLNEIFRKEDFYMEIQNH 184 Query: 174 GRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRN 233 G P++ + + + G+P+V TND F+ D +A +I + I + DP Sbjct: 185 GIPEQMTVAKQIYDFGKRTGIPLVVTNDSHFLKKDDQEAQDILLRIGMQKRITDP-MEFG 243 Query: 234 YSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYL 292 ++ + Y++S +EM +F +IPEA NT+EI+ + ++ ++ G Y LP+F + + YL Sbjct: 244 FNGEFYVKSPDEMARVFPEIPEAFYNTLEISNKVDLKLQFGNYLLPEFEVPEGYDADSYL 303 Query: 293 VKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSK 352 K EG+ + L P E +R+ EL I M F GYFLIV ++I ++K Sbjct: 304 EKLIWEGIGRKYPNLSP----------EIKDRVVFELNTIKNMKFAGYFLIVQDYINYAK 353 Query: 353 DNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRD 412 NG+PVGPGRGS AGS+VAYAL IT+++PL+ +LLFERFLNP+R MPD D DFC+E+R+ Sbjct: 354 RNGIPVGPGRGSAAGSIVAYALGITNVEPLQHNLLFERFLNPDRKDMPDIDTDFCVERRE 413 Query: 413 QVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA 472 +VI ++ YG + V QIITF ++AAKA ++DV RVL P+G + ++K P GM++A Sbjct: 414 EVINYIRRRYGEEKVGQIITFNSLAAKAALKDVARVLNLPFGEANEMTKAFPNKLGMSIA 473 Query: 473 KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDE 532 +A +L E D+ + +A++LEG R G+HA GVVI+P + + PL Sbjct: 474 EALTTSSELKNFSEKDDINHKIFAIAQRLEGNYRQPGRHAAGVVISPYPLEEVVPLSTVA 533 Query: 533 EGKHP-----VTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIA 587 E + P VTQ+DK+++E GL+K D LGL+ LT +++A+++I +RR +D+ Sbjct: 534 EKERPGSRSIVTQYDKNNLESIGLIKMDILGLKNLTTLDYAIKLIERRRGVR----IDLD 589 Query: 588 AIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGM 647 IP +D ++ +L+++ T +FQLES G+ DL+ + Q + F++++AL+AL+RPGP+ GM Sbjct: 590 EIPYNDANTYALLRKANTLGIFQLESTGITDLVAKSQVNNFDEIVALIALYRPGPMGEGM 649 Query: 648 VDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADM 707 +D ++DRK GR++++YP H S +P+L+ T+G+ +YQEQVM I++V+ G+++G +D+ Sbjct: 650 LDEYLDRKSGRKQVTYP-----HPSCEPILKETFGVPVYQEQVMSISRVVGGFSVGDSDV 704 Query: 708 LRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALV 767 LR+AM KKK + M K + F EGA K GI ++A +F+ +E+F GYGFNKSHS AYA++ Sbjct: 705 LRKAMAKKKADLMEKLKYQFVEGAVKQGIQEKVAKDLFEQLERFGGYGFNKSHSVAYAII 764 Query: 768 SYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVND 827 +YQT +LKA+Y E++ A++ +D T +V ++ MG++IL PD++ F+V D Sbjct: 765 TYQTAYLKANYTIEYLTALLASDHGKTTDIVKYINNAREMGIRILNPDVSESQASFNVID 824 Query: 828 DGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGA 887 D I +G+ A+KGVGE +IIEAR+K G F+ L D DT+ +N++V E LI +GA Sbjct: 825 DATIRFGLSAMKGVGETAANSIIEARDKAGNFKTLQDFALNIDTRLINKKVFEALIQAGA 884 Query: 888 FDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQ 947 D G R L S+ L A + + GQ +FGV W Sbjct: 885 LDSFGYTRKCLFESVDSILTFAQREQERTNEGQFSLFGVGESSFTLNLPK--DALEWEID 942 Query: 948 VVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMV 1007 L E+ GLYL+GHP+++Y K+++ + ++ + G + AG++ + + + Sbjct: 943 EKLRREKAIAGLYLSGHPLDKYEKQLKSLR-TIPIEKFDNLKSGSKVEVAGIISSKNIKL 1001 Query: 1008 TKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSG---QVSFDDFSGGLK 1064 +KR L+DR+G +E + F KY++ +++D+ + + G ++ D + Sbjct: 1002 SKRNEEFANFKLEDRTGEIECVAFAKTYQKYKEFIKEDQAIFIKGDLDKIEVGDTELRGQ 1061 Query: 1065 MTAREVMDIDE--AREKYARGLAISLTDRQI-DDQLLNRLRQSLEPHRSGTIPVHLY-YQ 1120 + + +D+ +K + L + L +R D +L+ +L L ++ G V+ + + Sbjct: 1062 VKVNSIEILDDTTIEDKLEKSLHLRLEERHTEDPELIPKLYALLACYK-GESSVYFHIVE 1120 Query: 1121 RADARARLRFGATWRVSPSDRLLNDLRGLIGSEQV 1155 + + +R T+ + P + L L L+G V Sbjct: 1121 DREEKRVIRAHDTYSIQPINELFLRLADLLGDRSV 1155 >UniRef50_B2KB15 DNA polymerase III, alpha subunit n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KB15_ELUMP Length = 1167 Score = 1230 bits (3183), Expect = 0.0, Method: Composition-based stats. Identities = 434/1185 (36%), Positives = 682/1185 (57%), Gaps = 59/1185 (4%) Query: 5 RFVHLRVHSDYSMIDGLAK-----TAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59 FVHL HS+YS++DG+ + + +K+ AA G A+AITD N+ G + FY Sbjct: 2 EFVHLHNHSEYSLLDGMLRLSEKGPSKFLKQVAADGFKAMAITDHGNMYGAMDFYKNAAA 61 Query: 60 AGIKPIVGADFNVQCDLLG------DELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 AGIKPI+G + + D+ HLT+LA + GYQNL LISKA+ G+ Sbjct: 62 AGIKPIIGCEAYITNGSHKNKEKGLDKTFHLTLLAKDYEGYQNLMALISKAWLDGF-YYH 120 Query: 114 PIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIR 172 P ID+D L + +G++ LSG G+V + LL G A E YE Y++EL+ Sbjct: 121 PRIDKDILAQHAKGIMALSGCLKGEVSQELLNGTFAQACEYAKTYESILGKGNYYIELMD 180 Query: 173 TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 G +E+ L +E++++ G+PVVATND + D+ AH+I + I G TLDDP R + Sbjct: 181 HGIEEEQIILPKLIEVSKSTGIPVVATNDCHYEKQEDWQAHDIHMCISMGKTLDDPNRLK 240 Query: 233 NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF--PTGDMSTED 290 + + + Y +S +EM ELF+ IPEA++NT+E+A++CNV + + LP F P T+ Sbjct: 241 SSTHELYFKSAQEMAELFSYIPEAVSNTLEVAEKCNVVMPKSGFVLPVFDIPPSFSDTDS 300 Query: 291 YLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQW 350 Y+ +EGL ++++ + P P Y ERL+ EL VI +MGF YFLIV +FI + Sbjct: 301 YIKNLCQEGLAKKMSGIIP---------PNYQERLDYELGVIGKMGFSSYFLIVADFIDY 351 Query: 351 SKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEK 410 ++ N +PVGPGRGSGAGS+VAY+L IT +DP++ LLFERFLNP+R+SMPD D+DF E Sbjct: 352 ARQNHIPVGPGRGSGAGSIVAYSLNITKVDPIKNGLLFERFLNPDRLSMPDLDIDFSDEG 411 Query: 411 RDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMT 470 R+QVI +V + YG V+QIITFGTM AK ++DV RVL P +RI+KLIP D G T Sbjct: 412 REQVINYVRNKYGETNVAQIITFGTMKAKMAVKDVARVLNIPVSESNRITKLIPNDLGTT 471 Query: 471 LAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYC 530 + A E +L + ++ + L D A+KLEG+ R+AG HA G+V+ +++ +APL Sbjct: 472 IDSAIETVKELKQEIASNPQTAKLFDFAKKLEGLKRHAGIHAAGIVVTREEVSKYAPLAR 531 Query: 531 DEEGKHPVTQFDKSDV-EYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAI 589 + TQ++ + + GL+K DFLGLRTLTII+ A+++I R + +DI I Sbjct: 532 GSKEA-ITTQYEGGILADDLGLLKIDFLGLRTLTIIDNAVDIIKNMRGID----IDIDNI 586 Query: 590 PLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVD 649 PLD+KK++++L ++T +FQLES GM+DL+KRL+P F D+ ALVAL+RPGP++SGM++ Sbjct: 587 PLDNKKTYELLSSAKTLGIFQLESGGMRDLVKRLKPSEFSDISALVALYRPGPMESGMLE 646 Query: 650 NFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLR 709 +F+ RK G+E+I+Y ++PVL+ TYG ++YQEQ+M+++++L G+T G AD LR Sbjct: 647 SFVRRKAGQEKITYDT-----PLMEPVLKETYGTMVYQEQIMELSKLLGGFTPGQADSLR 701 Query: 710 RAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSY 769 +AMGKKK +EM K R F G IN + A KIF+ + KFAGYGFNKSHS AYALVSY Sbjct: 702 KAMGKKKVDEMEKARVNFVNGCAGKKINPKTADKIFEQMSKFAGYGFNKSHSVAYALVSY 761 Query: 770 QTLWLKAHYPAEFMAAVMTADMDN--------TEKVVGLVDECWRMGLKILPPDINSGLY 821 QT +LKA+YP EFM +++T ++ + K+V ++E +MG + L PD+N Sbjct: 762 QTAYLKANYPIEFMCSLLTNEIGHNAIGSDDKENKIVTYIEEAKKMGFETLGPDVNHSKE 821 Query: 822 HFHVNDDGE---IVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRV 878 +F + + I +G+ A+K VG +I+ AR + DL R D K N++ Sbjct: 822 NFSIEEVNGKEIIRFGLEAVKNVGTEAAASIVSARGDR-PYCGFQDLLERIDLKASNKKT 880 Query: 879 LEKLIMSGAFDRL------GPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPE 932 +E LI +GA D L RA ++ + D L+ + + + +FG + Sbjct: 881 IESLIKAGALDSLIPGKTPNSARAVMLAEMEDMLEITAKIKEEKESSICSLFGEDSSAFV 940 Query: 933 QIEQSYASCQ--PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTER 990 +++ P ++ +L+ E+E LG Y +GHP+ +Y K +++ V +++++ Sbjct: 941 SVKKKETKTAPRPLKQEQLLEMEKEVLGFYNSGHPLAKYKKHMDKIKS-VTIEEINENNI 999 Query: 991 GKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIV 1050 + G++ + KR ++D +G++ ++ + + +E + I+ + Sbjct: 1000 KGAVNILGIITRVKKRQNKRKEDWAQFIIEDETGQMSANAYSRVYAEIAEKIENNAIVYL 1059 Query: 1051 SGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRS 1110 +G + D+ S ++ + I + A + I + + + +RL +L Sbjct: 1060 TGDIKTDEESARTEIMVSNIESIIPVISRAAAKVTIDIP--KGYSETNSRLLNTLLERGK 1117 Query: 1111 GTIPVHLYYQRADA-RARLRFGATWRVSPSDRLLNDLRGLIGSEQ 1154 G V+ + D +A + ++ L++ + +G Sbjct: 1118 GITEVYFNIESPDEDKAPFLVRSQHKIVLHKALIDHIENTLGENS 1162 >UniRef50_A1ZEC3 DNA polymerase III alpha subunit n=2 Tax=Bacteroidetes RepID=A1ZEC3_9SPHI Length = 1403 Score = 1230 bits (3182), Expect = 0.0, Method: Composition-based stats. Identities = 430/1182 (36%), Positives = 667/1182 (56%), Gaps = 62/1182 (5%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 F HL VHS +S++ A L+K A GMPA+A TD N+ K G G +K Sbjct: 239 PFSHLHVHSQFSILQSTASVGGLIKFAKEHGMPAIAFTDHGNMHAAFKAVGEGAKNDVKV 298 Query: 65 IVGADFNVQCDL--------LGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPII 116 I+G +F V + D + +LA + Y L L S Y GY A P I Sbjct: 299 IIGCEFYVAQERTKTKFTKSDRDRRFNQVLLAKDQEAYHRLAKLSSLGYIEGYYAGFPRI 358 Query: 117 DRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRP 176 +D + E +EGLI L+G G++ +L +E ++ F D +++E++R G+ Sbjct: 359 GKDLIEEYHEGLIALTGNLQGEIPDLILNQGEHEAEEAFKWWHNLFGDDFYVEIMRHGQE 418 Query: 177 DEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPK------- 229 +EE ++ A G+ +ATN+V +I D DAH+ + + PK Sbjct: 419 EEERVNEVLLKFAAKYGVKPIATNNVYYIGDEDADAHDSLLCVKGADKKSTPKMFTPDIK 478 Query: 230 ----RPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGD 285 R + + YM++ EEM ELF+DIP AL T EI +C+ + +P + Sbjct: 479 RRNLRYGMPNEEYYMKTPEEMNELFSDIPIALETTQEIVDKCSPIKLKRDILMPVYEMPS 538 Query: 286 M--STEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLI 343 + +DYL EG +R + E ERL+ EL +I MGFPGYFLI Sbjct: 539 EFATQDDYLRHLTYEGATKRYGEI----------TEEIRERLDHELNIIKSMGFPGYFLI 588 Query: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 V +FI ++D GV VGPGRGS AGS VA+ + IT++DP++++LLFERFLNPERVSMPD D Sbjct: 589 VQDFINAARDMGVFVGPGRGSAAGSAVAFCIGITNIDPIKYNLLFERFLNPERVSMPDVD 648 Query: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 +DF E R I +V D YG++ V+QIIT+GTMAAK I+DV RVL P ++++K + Sbjct: 649 IDFDDEGRQDAINYVIDKYGKNQVAQIITYGTMAAKMAIKDVARVLELPIPDSNKLAKYV 708 Query: 464 PPDPGMTLAKAFEAEPQLPEIY--EADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTK 521 P PG L AF +L ++ + ++ A+ LEG R G HA GV+IAP Sbjct: 709 PDKPGTKLKDAFAEVQELKDVLARPEGDLENQVLRQAKILEGSVRGTGIHAAGVIIAPDD 768 Query: 522 ITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGE 581 + + P+ ++ VTQFD +E AG++K DFLGL+TLT+I AL MI K + Sbjct: 769 LLKYIPVCTSKDADLLVTQFDGKVIEDAGMLKMDFLGLKTLTVIKDALRMIKKNY----D 824 Query: 582 PPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPG 641 +D+ IPLDD+ + ++ Q ET FQ ES GM+ +K+L+P ED+IA+ AL+RPG Sbjct: 825 IDIDMDKIPLDDQATLELYQNGETVGTFQFESEGMRMYLKQLKPTNIEDLIAMNALYRPG 884 Query: 642 PLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYT 701 PLQ + NFI+RKHG EE+ YP H+ L+P+L TYGI++YQEQ+MQ AQ+L GY+ Sbjct: 885 PLQ--FIPNFINRKHGTEEVEYP-----HDLLEPILNNTYGIMVYQEQIMQTAQILGGYS 937 Query: 702 LGGADMLRRAMGKKKPEEMAKQRSVFAEGAEK-NGINAELAMKIFDLVEKFAGYGFNKSH 760 LGGAD+LRRAMGKKK EEM +Q +F +GA++ +GI E + K+F+++++FA YGFN+SH Sbjct: 938 LGGADLLRRAMGKKKLEEMDRQEVIFMKGAKEIHGIPEEKSRKVFEVMKEFAKYGFNRSH 997 Query: 761 SAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGL 820 SAAY++V+YQT +LKA+YP+E+MA+V+T +M+N +KV +DE MGL+IL PD+N Sbjct: 998 SAAYSVVAYQTAYLKANYPSEYMASVLTHNMNNIDKVTFFIDETKNMGLQILGPDVNESE 1057 Query: 821 YHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLE 880 F VN G+I +G+GA+KG G+ +E IIE R K G F+++FD R + + +N++ E Sbjct: 1058 QSFTVNPVGQIRFGLGAVKGTGDAAVENIIEERKKNGPFKDMFDFARRVNLRTVNKKSFE 1117 Query: 881 KLIMSGAFDRLGP-HRAALMNS--------LGDALKAADQHAKAEAIGQADMFGVLAEEP 931 +GAFD LG HRA + L +K + + K + +FG Sbjct: 1118 CFAQAGAFDNLGKLHRAQFFAAMPNDTATFLERIIKFGNAYQKEIENAKTSLFGASG-AV 1176 Query: 932 EQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERG 991 + +PW + L+ E+E +G Y++GHP+++Y ++++ G V L + + Sbjct: 1177 TIAQPKVPYTEPWSQLEKLNREKEVVGFYMSGHPLDRYRAGMKKF-GAVALDKIESFQH- 1234 Query: 992 KVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVS 1051 + +T A +V + TK G +++D S +++ LF ++ + L+E +++++++ Sbjct: 1235 QEVTVACIVTKKELRQTKNGKPFTSFSIEDYSTSMDLALFGESHETLSDLIEVNQLILLT 1294 Query: 1052 GQVSFDDFS-GGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRS 1110 G+V S ++ ++ ++E +EK RGL I + +++D+L+ ++ + + + Sbjct: 1295 GKVQKRYGSEDRYELRTSQIKPLEEMQEKMCRGLVIQVDIAKLNDELMEKMEKVAQENT- 1353 Query: 1111 GTIPVHLYYQRADARARLRF---GATWRVSPSDRLLNDLRGL 1149 G + ++ + + ++V +RL L Sbjct: 1354 GEHELKIWVYDLQEQPTMMVELNSQKYKVQADERLQQKFESL 1395 >UniRef50_C7MKU1 DNA-directed DNA polymerase III PolC n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MKU1_CRYCD Length = 1165 Score = 1229 bits (3180), Expect = 0.0, Method: Composition-based stats. Identities = 430/1174 (36%), Positives = 639/1174 (54%), Gaps = 43/1174 (3%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAG----HGAG 61 FVHL H++YS++DG +V++AA LGMPA+AITD + G+ + A G Sbjct: 3 FVHLHNHTEYSLLDGATHVKDMVQRAADLGMPAVAITDHGVMSGVPELEDACISVEKETG 62 Query: 62 IK--PIVGADFNVQCDLL-----GDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGP 114 IK PI G + D L H+ +LA N GY NL L+S+++ + P Sbjct: 63 IKVKPIFGCEIYFTTDDELKREGKPRLYHMILLAKTNEGYHNLVKLVSESHVDNF-YYKP 121 Query: 115 IIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRT 173 L ++GLI S G + R L G F P ++LEL Sbjct: 122 RTTFAMLKRYSKGLIGTSACIAGIIPRLLDLGQYEDAMSWARKLAGLFEPGDFYLELQDQ 181 Query: 174 GRPD-----EESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228 G + ++A+ GL +ATND ++ D A +I + I G +DD Sbjct: 182 GVVTDLGHTQHELNVQLSQIAKECGLKTIATNDFHYLTHDDAKAQDIILCIGTGSQVDDT 241 Query: 229 KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMST 288 R R + Q YM++EEEM AD PEA NTVEIA++CNV + + LP+FP + T Sbjct: 242 NRMRFSNDQFYMKTEEEMRAALADFPEACDNTVEIAEKCNVVLE-RDSILPRFPVPEGET 300 Query: 289 E-DYLVKRAKEGLEERLAFL-FPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVME 346 E + K+ + GL R +E + RPE ER E E QVI + GFP YFLIV E Sbjct: 301 EVSWFRKQCESGLVRRYGEGKVQTFQELAQVRPEVAERYEHEAQVIIKQGFPAYFLIVQE 360 Query: 347 FIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 406 +I W+KD+G+ VGPGRGS AGS+V YA+ ITDLDPL + LLFERFL+ ERV MPD DVDF Sbjct: 361 YIMWAKDHGIGVGPGRGSAAGSIVTYAMGITDLDPLPYGLLFERFLSEERVEMPDIDVDF 420 Query: 407 CMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPD 466 + R VI+HV + YG D +S +ITFG + AK +RD RVLG+PYG DR+ KLI + Sbjct: 421 DDQHRQDVIDHVREFYGEDHISGVITFGKLQAKNAVRDAARVLGYPYGVGDRLCKLIGNE 480 Query: 467 PGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 G+T+ +A E P L YE++ + +A+ID A+ +EG R G HA +I + D Sbjct: 481 LGITIQQALETNPDLKAAYESEADAQAVIDAAQSIEGHVRGEGVHACATIICRDPLADHV 540 Query: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586 P+ D +G +TQ+D GL+K DFLGLRTL +I+ A + + R + +D Sbjct: 541 PVKRDTKGGGIITQYDGHYTPELGLLKMDFLGLRTLGVISRACDNVKARHGID----IDP 596 Query: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 +AI L+D ++F ++ +FQ+E L R++P F D++A +AL RPGPLQ+G Sbjct: 597 SAISLEDPEAFKLMCGGNMDGLFQVEGNLYVTLFARMKPRRFSDIVASIALNRPGPLQNG 656 Query: 647 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 VD+++DR G+ ++ Y D + L+P+LE TYG I+YQEQ+MQI+ +SG++ G AD Sbjct: 657 FVDDYVDRVSGKSQVVYYD-----DRLRPILEETYGTIVYQEQLMQISMRMSGFSAGKAD 711 Query: 707 MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 LR+AMGKKK E M + +GA NG + E++ KI+ EKFA Y FNKSHSA YA+ Sbjct: 712 KLRKAMGKKKLEVMKALEEDWNQGAVDNGYSLEVSKKIWSDAEKFAQYAFNKSHSACYAV 771 Query: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 + +T +LKAHYP EFMAAV+++ + N +K++ + C G+++LPPDINS F Sbjct: 772 LVMRTAYLKAHYPNEFMAAVLSSYLGNNDKLIHYIASCAASGIQVLPPDINSSNVEFTPT 831 Query: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 D+G + +G+ ++GVGE +E II R+ G + L D R D++ NR+ LE LI +G Sbjct: 832 DEG-VRFGLAGVRGVGEKVVEEIIAERDTHGPYTSLHDFVHRLDSRCYNRKTLEALIKAG 890 Query: 887 AFDRLGPHRAALMNSLGD--ALKAADQHAKAEAIGQADMFGVLAEEPE---QIEQSYASC 941 AFD G R LM + + L++A + K GQ MF + + + E Sbjct: 891 AFDSTGYTRKQLMYFIDETPLLESAAKRQKDRNCGQTSMFDLFGDSDDSGFSEETPAPDG 950 Query: 942 QPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERG-KVITAAGLV 1000 W ++ +L E++ L +Y++ HP+ Y + + + RL D+ E K T G++ Sbjct: 951 VEWDKRTLLAFEKDILKIYVSDHPLRPYAGLLSK-LSKFRLGDLADREHDIKNATFVGMI 1009 Query: 1001 VAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFS 1060 + +TK+G R+ TL+D +G +E + F + + + +D I+ V G+ D + Sbjct: 1010 SSVVTKLTKKGTRMATFTLEDTTGHVEAVCF--KYEDFANAIAEDTIVKVKGKYEVGDRN 1067 Query: 1061 GGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ 1120 + + DE + R +A+S+ R + + L Q L + G + L+ Sbjct: 1068 QLMAFEVERLDLADEPTDVAPRTVALSVMQRDLSQSNMQFLTQILRKY-PGQDSLVLFVS 1126 Query: 1121 RADARARLRFGATWRVSPSDR-LLNDLRGLIGSE 1153 + D R + R V D+ L +L+ L G + Sbjct: 1127 QHDGR-KYRANLPLTVDSHDKALFGELQSLFGRK 1159 >UniRef50_C7RGV3 DNA polymerase III, alpha subunit n=4 Tax=Clostridiales Family XI. Incertae Sedis RepID=C7RGV3_ANAPD Length = 1148 Score = 1228 bits (3178), Expect = 0.0, Method: Composition-based stats. Identities = 422/1183 (35%), Positives = 672/1183 (56%), Gaps = 69/1183 (5%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 +F HL VH++YS++DG ++ L+ +A LGM +LAITD + G+++FY GIKP Sbjct: 4 KFTHLHVHTEYSLLDGFSRIDLLLDRAKELGMDSLAITDHGQMYGVIEFYKQAKKRGIKP 63 Query: 65 IVGADFNVQCDLLGDE------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDR 118 I+G + V + + HL +LA N GY+NL ++S+AY G+ P + Sbjct: 64 IIGCEVYVSENDHTIKEASNRRYYHLILLAKNMDGYKNLIKIVSEAYVNGF-YYKPRVSF 122 Query: 119 DWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRTGRPD 177 D++ + +E +I LS G+V + L+ + E YEE F ++LEL G + Sbjct: 123 DFIKKYSEDIIALSACLNGEVSQRLIENDYESAKETAQRYEEAFGKGNFYLELQNHGIKE 182 Query: 178 EESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQ 237 + + E +P+VATND+ +I+ D ++ + I G + D R + + + Sbjct: 183 QNIVNRGLARIHEEEDIPLVATNDIHYINKEDAYYQDVLLCIQTGKLVKDEDRMKMPASE 242 Query: 238 QYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM--STEDYLVKR 295 Y++S EM ELF A+ NT +IA +CNV E LP F + + +YL K Sbjct: 243 FYLKSYNEMKELFGAYQGAIENTQKIADQCNVEFTFHEPHLPYFTKVEEGLTDLEYLKKL 302 Query: 296 AKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNG 355 +GL ++ + + R + E++VI MG+ YFLIV +F++++++N Sbjct: 303 VDQGLIKKYGSI----------SEKIRSRADKEIKVIADMGYVDYFLIVWDFVRYAREND 352 Query: 356 VPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVI 415 + VGPGRGS AGS+V+YAL IT +DPL++ L+FERFLNPERVSMPD D+DF RD+V+ Sbjct: 353 IAVGPGRGSAAGSIVSYALDITQIDPLKYKLIFERFLNPERVSMPDIDIDFDYVLRDKVV 412 Query: 416 EHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAF 475 E+V ++YGRD VSQI+TFG M A+ +RDVGRVL Y VD+I+KLIP GMT+ KAF Sbjct: 413 EYVNELYGRDHVSQIVTFGRMQARNAVRDVGRVLDISYAKVDKIAKLIPQAIGMTIDKAF 472 Query: 476 EAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGK 535 ++ + EIYE+D E K LID ARK+EG+ R+ HA GVVI+ +TD PL Sbjct: 473 DSSSKFKEIYESDVEAKRLIDTARKVEGLPRHTSIHAAGVVISKEVLTDIIPL--ALSND 530 Query: 536 HPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKK 595 VTQ+D +++E GL+K DFLGLR LT+I ++ + K R + +D++ I ++DK Sbjct: 531 LVVTQYDMTEIEELGLLKMDFLGLRNLTVIKNTIKDVKKNRGID----VDLSKIDVNDKN 586 Query: 596 SFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRK 655 D ++T +FQ ES GM++ +K L+P F+D+IA +LFRPGP+ + +I K Sbjct: 587 VIDQFNNAKTIGIFQFESAGMRNFLKNLKPTVFDDLIAANSLFRPGPMDE--IPKYIHNK 644 Query: 656 HGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKK 715 + ++++ D +LKP+L+ TYGII+YQEQVMQI Q L+GY+LG AD LRRAM KK Sbjct: 645 NNPADVTFID-----PALKPILDVTYGIIVYQEQVMQIVQKLAGYSLGEADNLRRAMSKK 699 Query: 716 KPEEMAKQRSVFAE------------GAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAA 763 K M + R +F + G +NG++ A +I+D + FA Y FNKSHSAA Sbjct: 700 KMAVMEENRGIFIKGKTDSSGNVVIPGCIRNGVDESSANQIYDEMISFAKYAFNKSHSAA 759 Query: 764 YALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHF 823 Y+LV+ QT +LK +YP E+MA ++++ MD + K+ V+E +G+++LPPD+N F Sbjct: 760 YSLVAIQTAYLKYYYPEEYMANLISSVMDQSSKLYLYVNETKALGIEVLPPDVNKSFAEF 819 Query: 824 HVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCART---DTKKLNRRVLE 880 V + G+I++G+ IK VG I++I++AR K G F D R D++ LN++ +E Sbjct: 820 SVEE-GKIIFGLSGIKNVGSNLIDSIVKARKKDGKFTNFKDFLQRVDEIDSRSLNKKGIE 878 Query: 881 KLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYAS 940 LI +GAFD L R++LM A+ A + K GQ ++ LA++P++ Sbjct: 879 SLIKAGAFDSLKYTRSSLMAIYEKAISAVSDNRKINVKGQLNLLDDLADKPKED-VRIQE 937 Query: 941 CQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVR--LKDMHPTE----RGKVI 994 +P++ L E+E LG Y++ HP++ + +V + T K + Sbjct: 938 INEFPKKTKLKLEKEVLGFYISDHPLSDLGDRLGDFVNFTTDYKDHIDDTRIHLLDNKFV 997 Query: 995 TAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQV 1054 + AG++ ++TK+ + TL+D G +E+++F + KY+ ++++D +IV G + Sbjct: 998 SMAGVITNKSEIMTKKRQLMCFATLEDMQGSIEIVIFPEVYRKYRNVIDEDSAVIVKGNL 1057 Query: 1055 SFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIP 1114 D+ +K+ E +DI++ K + L ++ N++R L ++ GT P Sbjct: 1058 QVDERD--IKLLTNEFVDIEKLNFK-----TLYLKSEYLE---YNKVRNILVQNK-GTTP 1106 Query: 1115 VHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSEQVEL 1157 V +Y+ + ++ +++ + L +G E V++ Sbjct: 1107 VVIYFADKNKS--VKLDKKLWFDINEKSIKVLEEFLGKENVKI 1147 >UniRef50_D0SVP0 DNA polymerase subunit III n=3 Tax=Gammaproteobacteria RepID=D0SVP0_ACILW Length = 1190 Score = 1227 bits (3174), Expect = 0.0, Method: Composition-based stats. Identities = 579/1168 (49%), Positives = 770/1168 (65%), Gaps = 39/1168 (3%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL +H+++S+ + + + LVK A MPALA+TD +NL VKFYG GIKPI Sbjct: 3 FVHLGIHTEFSITESIVRIPDLVKAAEEEQMPALALTDLSNLHAAVKFYGKCLSKGIKPI 62 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 +G++ + +T+LA NTG++NLT L+S+ + G P + + W++ Sbjct: 63 LGSEIRLNDAEH-----RMTLLAMTNTGWRNLTELVSEGFISGQQLDIPCVQKQWILNQP 117 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 185 E +I L G DVG+ L+ N + + + E F +R +L L RT RPDE++++ A Sbjct: 118 EDMIALLG-MHSDVGKMLMSSNPQKAEPLLEEWVEKFGNRVYLALTRTNRPDEDNFILEA 176 Query: 186 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 245 V+LA+ + VVA NDV F+ D++AHE RV I DG+ L D +RP+ YSP+QY +S EE Sbjct: 177 VKLAKKYNIGVVAHNDVHFMTRDDYEAHEARVCIADGYVLGDNRRPKTYSPEQYFKSAEE 236 Query: 246 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMST-EDYLVKRAKEGLEERL 304 M LF+DIP A+ NT IAKRCNVT++LG+YFLP +P + T + + +KEGLEERL Sbjct: 237 MTALFSDIPSAIENTYHIAKRCNVTLQLGKYFLPDYPIPEGHTIDTFFAHLSKEGLEERL 296 Query: 305 AFLFPDE---EERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPG 361 FL+P E E+ + R YDER+E E+ +IN MGFPGYFLIVM+FIQWSK NGVPVGPG Sbjct: 297 NFLYPPEQRDEDWPEIRKPYDERIEYEINIINSMGFPGYFLIVMDFIQWSKSNGVPVGPG 356 Query: 362 RGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADM 421 RGSGAGSLVAY+LKITDLDPL ++LLFERFLNPERVSMPDFDVDFC+ RD+VI++VA Sbjct: 357 RGSGAGSLVAYSLKITDLDPLRYELLFERFLNPERVSMPDFDVDFCIAGRDRVIDYVART 416 Query: 422 YGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFE-AEPQ 480 YGRDAVSQI TFGTMAAK IRDV RVLG YG DRISK+IP P AEPQ Sbjct: 417 YGRDAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMIPTKPLGLSLLESLEAEPQ 476 Query: 481 LPEIY-----EADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGK 535 L +I ++ + +MA KLEG+TRN GKHAGGVVI+PTKITDF+ + CD +G Sbjct: 477 LKDIVTNPSNPDHDDAAEIWEMALKLEGITRNTGKHAGGVVISPTKITDFSAVMCDADGT 536 Query: 536 HPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKK 595 V QFDK DVE AGLVKFDFLGLR LT+I A++ INKR + PLDIA I L+DK Sbjct: 537 GRVAQFDKDDVESAGLVKFDFLGLRNLTVIEDAVKNINKRIKAD--KPLDIAYIQLEDKD 594 Query: 596 SFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRK 655 ++ + + TTAVFQ ES GMK ++K +P FE++IA V+L+RPGP+ + +FI R Sbjct: 595 AYLVFANANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRPGPMDL--IPDFIHRM 652 Query: 656 HGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKK 715 HG D ++ H L+ VLEPTYGI++YQEQVMQ AQ +GYTLGGAD+LRRAMGKK Sbjct: 653 HG------GDFEYLHPLLEGVLEPTYGIMVYQEQVMQAAQYCAGYTLGGADLLRRAMGKK 706 Query: 716 KPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 775 KPEEM KQR +F EGA K I+ A IFD +EKFAGYGFNKSH+AAYALV+YQT WLK Sbjct: 707 KPEEMVKQRQIFIEGASKKDIDEATANHIFDYMEKFAGYGFNKSHAAAYALVAYQTAWLK 766 Query: 776 AHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGI 835 AHYPAEF++AV+T++M NT+ VV L+D+C + L++LPP +N LY FH D+ IVYG+ Sbjct: 767 AHYPAEFLSAVLTSEMQNTDNVVFLIDDCRKNNLEVLPPSVNMSLYQFHAIDEQTIVYGL 826 Query: 836 GAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHR 895 GAIKGVGE ++++I++R + G FR+LFD C R D KK+N+R LE LI SGA D LG R Sbjct: 827 GAIKGVGEAAMQSVIDSRAQEGPFRDLFDFCHRIDLKKINKRTLEALIRSGALDCLGIDR 886 Query: 896 AALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERE 955 A LM L +A++AA+Q G D+FG E E + +PW ++V L GE++ Sbjct: 887 ADLMAQLPEAVQAAEQARSNRETGIMDLFG---EVEEVQRKPSKPVKPWADEVRLKGEKD 943 Query: 956 TLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIG 1015 TLGLYLTGHPI+ Y E++ +V + ++ PT RG AGLVV NR+ Sbjct: 944 TLGLYLTGHPIDVYRNELKAFVPCQ-INELTPTRRGVTTVFAGLVVDIANFP----NRM- 997 Query: 1016 ICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDE 1075 + TLDD + R+E+ + ++++++++ D+++++ G++ + + ++E Sbjct: 998 MMTLDDGTARIEISANHERFNRFKEIIQLDKVVVIEGEIYEREGFDRPMGRLTKAFSLNE 1057 Query: 1076 AREKYARGLAISLTDRQIDDQLLNRLRQSLEPH----RSGTIPVHLYYQRADARARLRFG 1131 R+K A + I+LT L L+Q L P+ S IPV LY A L G Sbjct: 1058 IRQKRANSIKITLTAEHFSKSLSRDLQQILTPYCNVDMSAHIPVILYLDYPYATTELHLG 1117 Query: 1132 ATWRVSPSDRLLNDLRGLIGSEQVELEF 1159 W+V+P D LL LR G E + +E+ Sbjct: 1118 LNWKVAPLDELLAKLRDYFGKEALHIEY 1145 >UniRef50_O67125 DNA polymerase III subunit alpha n=4 Tax=Aquificaceae RepID=DPO3A_AQUAE Length = 1161 Score = 1225 bits (3170), Expect = 0.0, Method: Composition-based stats. Identities = 431/1196 (36%), Positives = 668/1196 (55%), Gaps = 88/1196 (7%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS+ FVHL +H+ +S++DG K LVKKA G A+ ++D NL G KFY A Sbjct: 1 MSK-DFVHLHLHTQFSLLDGAIKIDELVKKAKEYGYKAVGMSDHGNLFGSYKFYKALKAE 59 Query: 61 GIKPIVGADFNVQCDLLGDEL-------------THLTVLAANNTGYQNLTLLISKAYQR 107 GIKPI+G + D HL ++A ++ G +NL L + AY+ Sbjct: 60 GIKPIIGMEAYFTTGSRFDRKTKTSEDNITDKYNHHLILIAKDDKGLKNLMKLSTLAYKE 119 Query: 108 GYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYF 167 G+ P ID + L + EGLI L+ G +E V +++ F D + Sbjct: 120 GF-YYKPRIDYELLEKYGEGLIALTACLKGVPTYYASINEVKKAEEWVKKFKDIFGDDLY 178 Query: 168 LELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDD 227 LEL P++E +E+A+ + ++AT D +++ D AH + +A+ T+ + Sbjct: 179 LELQANNIPEQEVANRNLIEIAKKYDVKLIATQDAHYLNPEDRYAHTVLMALQMKKTIHE 238 Query: 228 P--KRPRNYSPQQYMRSEEEMCELFAD----IPEALANTVEIAKRCNVTVRLGE---YFL 278 + + + E M + F +AL NT+E+ ++ + + E Y L Sbjct: 239 LSSGNFKCSNEDLHFAPPEYMWKKFEGKFEGWEKALLNTLEVMEKTADSFEIFENSTYLL 298 Query: 279 PQFPTG-DMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGF 337 P++ D + E+YL + A +GL +R+ + K EY ERLE EL+VIN+MGF Sbjct: 299 PKYDVPPDKTLEEYLRELAYKGLRQRIERG------QAKDTKEYWERLEYELEVINKMGF 352 Query: 338 PGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERV 397 GYFLIV +FI W+K N +PVGPGRGS GSLVAYA+ ITD+DP++ LFERFLNPERV Sbjct: 353 AGYFLIVQDFINWAKKNDIPVGPGRGSAGGSLVAYAIGITDVDPIKHGFLFERFLNPERV 412 Query: 398 SMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVD 457 SMPD DVDFC + R++VIE+V + YG D V+QIIT+ M AK +RDV R +G PY D Sbjct: 413 SMPDIDVDFCQDNREKVIEYVRNKYGHDNVAQIITYNVMKAKQTLRDVARAMGLPYSTAD 472 Query: 458 RISKLIPPDP----GMTLAKAF-------------------EAEPQLPEIYEADEEVKAL 494 +++KLIP ++L + + + + +I E E+K L Sbjct: 473 KLAKLIPQGDVQGTWLSLEEMYKTPVEELLQKYGEHRTDIEDNVKKFRQICEESPEIKQL 532 Query: 495 IDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKF 554 ++ A KLEG+TR+ HA GVVIAP +++ PLY D+EG+ TQ+D +E GL+K Sbjct: 533 VETALKLEGLTRHTSLHAAGVVIAPKPLSELVPLYYDKEGE-VATQYDMVQLEELGLLKM 591 Query: 555 DFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESR 614 DFLGL+TLT + E+I +R + ++ +PLDD K + +LQ +TT VFQLESR Sbjct: 592 DFLGLKTLTELKLMKELIKERHGVD----INFLELPLDDPKVYKLLQEGKTTGVFQLESR 647 Query: 615 GMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLK 674 GMK+L+K+L+PD F+D++A++AL+RPGPL+SG+VD +I RKHG+E + YP L+ Sbjct: 648 GMKELLKKLKPDSFDDIVAVLALYRPGPLKSGLVDTYIKRKHGKEPVEYP-----FPELE 702 Query: 675 PVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKN 734 PVL+ TYG+I+YQEQVM+++Q+LSG+T G AD LR+A+GKKK + MA+ + F +GA + Sbjct: 703 PVLKETYGVIVYQEQVMKMSQILSGFTPGEADTLRKAIGKKKADLMAQMKDKFIQGAVER 762 Query: 735 GINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNT 794 G E K+++ +EKFA Y FNKSHS AY +SY T ++KAHYPAEF A +T + ++ Sbjct: 763 GYPEEKIRKLWEDIEKFASYSFNKSHSVAYGYISYWTAYVKAHYPAEFFAVKLTTEKND- 821 Query: 795 EKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARN 854 K + L+ + G +ILPPDIN F + + I +G+ IKGVGE + I+EAR Sbjct: 822 NKFLNLIKDAKLFGFEILPPDINKSDVGFTIEGENRIRFGLARIKGVGEETAKIIVEARK 881 Query: 855 KGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAK 914 K F+ L D +T +K+N++V+E L+ +GAFD R L+ + + K Sbjct: 882 KYKQFKGLADFINKTKNRKINKKVVEALVKAGAFDFTKKKRKELLAKVAN-------SEK 934 Query: 915 AEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIE 974 A Q +FG EE E+++ L E+E LG Y++GHP++ Y K ++ Sbjct: 935 ALMATQNSLFGAPKEEVEELDP-------------LKLEKEVLGFYISGHPLDNYEKLLK 981 Query: 975 RYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDA 1034 ++D+ ++ G++ +V TK G+ + + L D++G +E ++F Sbjct: 982 N--RYTPIEDLEEWDKESEAVLTGVITELKVKKTKNGDYMAVFNLVDKTGLIECVVFPGV 1039 Query: 1035 LDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQID 1094 ++ ++L+E+DR+++V G + D + +K +EV +E ++ L I L Q Sbjct: 1040 YEEAKELIEEDRVVVVKGFLDEDLETENVKFVVKEVFSPEEFAKEMRNTLYIFLKREQAL 1099 Query: 1095 DQLLNRLRQSLEPHRSGT-IPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGL 1149 + + +L+ +E +R+ + L D L ++ +++ ++ L Sbjct: 1100 NGVAEKLKGIIENNRTEDGYNLVLTVDLGDYFVDLALPQDMKLKADRKVVEEIEKL 1155 >UniRef50_O83675 DNA polymerase III subunit alpha n=5 Tax=Treponema RepID=DPO3A_TREPA Length = 1170 Score = 1225 bits (3170), Expect = 0.0, Method: Composition-based stats. Identities = 438/1184 (36%), Positives = 640/1184 (54%), Gaps = 65/1184 (5%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M+ FVHL VHS+YS++DG + LV+ A +LG ALA+TD N+ G + F Sbjct: 1 MARMSFVHLHVHSNYSLLDGASSLQRLVRTAKSLGQEALALTDHGNMFGALHFQKVCSAE 60 Query: 61 GIKPIVGADFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAA 112 GIK I+G + V + D HL VLA N TGY+NL +L SKAY G Sbjct: 61 GIKAIIGCELYVAPESRFDRSEHTIGRRYYHLIVLAKNETGYRNLMVLSSKAYIEGM-YY 119 Query: 113 GPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELI 171 P +D + L + EGLI LS G + LL+G +E Y F D YF+E+ Sbjct: 120 KPRVDDELLAQHAEGLICLSSCLAGQLPYLLLQGRKREAEEHARKYRALFGVDNYFIEVQ 179 Query: 172 RTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRP 231 G +E+ +ELA G+P+V TNDV + + D A +I + I DP R Sbjct: 180 DHGLDEEKKVAPLLIELACRLGIPLVVTNDVHYAEQEDSVAQDILLCIGTKKNRSDPNRL 239 Query: 232 RNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM--STE 289 + + + Y++S E+M +LF PE + NTV IA+RCNV + LP + S E Sbjct: 240 KFKTDEFYLKSSEKMAQLFPHYPEMVLNTVRIAQRCNVRIPQPGPLLPLYQIPHEFSSKE 299 Query: 290 DYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQ 349 Y+ GL +R E R + EL VI +M F GYFLIV +FI Sbjct: 300 HYIRHLVHRGLYDRY----------AVVSEEIKARADYELDVIVRMDFVGYFLIVWDFIT 349 Query: 350 WSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCME 409 W+K++ +PVGPGRGSGA S+VAYALKITD+DPL + LLFERF+NPER+SMPDFD+DFC E Sbjct: 350 WAKEHDIPVGPGRGSGASSIVAYALKITDIDPLRYKLLFERFMNPERISMPDFDIDFCFE 409 Query: 410 KRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGM 469 +R +VIE+V YG D V QIITFGT+ KA IRDVGRVL P V I+KL+P DP + Sbjct: 410 RRQEVIEYVRARYGNDNVGQIITFGTLKPKAAIRDVGRVLDIPLSEVLMITKLMPDDPKL 469 Query: 470 TLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLY 529 T KA+E+E QL ++ + + L +A KLE RN HA G+VI T +TD+ PLY Sbjct: 470 TFKKAYESE-QLAQM-KQEPRYAELFQIAEKLEDTNRNTSLHAAGIVIGKTALTDYVPLY 527 Query: 530 CDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAI 589 D + TQF +E GLVK DFLGL+TLT+I ++ ++ K I+ I Sbjct: 528 KDSKTGKISTQFGMDLIEDCGLVKMDFLGLKTLTLIQRTQNLVRRKGGK--YTTFSISDI 585 Query: 590 PLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVD 649 D +F ML ++ AVFQ ESRGM+ ++KR +P ED+IAL AL+RPGP+ +D Sbjct: 586 SDQDPTTFSMLAEGKSAAVFQFESRGMQGILKRAKPSKMEDLIALNALYRPGPMA--FID 643 Query: 650 NFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLR 709 +I+ K +I YPD L+ +L TYG+I+YQEQVMQ+AQ ++G++LG AD+LR Sbjct: 644 QYIESKRDPGKIKYPD-----PCLEDILSETYGVIVYQEQVMQVAQRIAGFSLGEADILR 698 Query: 710 RAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSY 769 RAMGKKK M +++ FAE AEK G + + A IF+++ FAGYGFNKSH+ AY++V+Y Sbjct: 699 RAMGKKKLAVMQEKKKEFAERAEKQGFDKKHAENIFEILIPFAGYGFNKSHATAYSVVAY 758 Query: 770 QTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDG 829 QT +LKA++PAEFMAA ++ ++++ EK+ + E +MGL I PD+N+ +F V + G Sbjct: 759 QTAFLKANFPAEFMAANLSNEINSAEKLPLYMAEAEKMGLSIQKPDVNASEPYFSVCE-G 817 Query: 830 EIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFD 889 IVYG+ IKG+GE + + R + G + ++ R LN++ E +I +G FD Sbjct: 818 CIVYGLLGIKGLGEQVAFDVFDERIRNGPYTSFVEVLDRVPATSLNKKNAEIMIKAGCFD 877 Query: 890 RLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVV 949 R G RA+L L DA+K + + QA +F + E E ++ + W ++ Sbjct: 878 RFGVTRASLTAHLDDAMKYVARKKAVTSSRQASLFDE-TDLGECSEYTFPVMEEWSQRER 936 Query: 950 LDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTK 1009 L E+E +G Y++GHP+++Y I + L + G++ A TK Sbjct: 937 LRIEKELMGYYISGHPLDEYRSVIGEKA-TLDLGHIENARSENKYLIVGVLNAIHPYTTK 995 Query: 1010 RGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTARE 1069 G + + +D G +++++F ++++ + I+ + G V D Sbjct: 996 SGKNMAFGSFEDLHGSVDIVVFPVLWEEHRAQFLPETIMGLVGTV--DFSKETPAFLVDS 1053 Query: 1070 VMDIDEAREKYAR--------------------------GLAISLTDRQIDDQLLNRLRQ 1103 V+D+++ R + + I ++ L + Sbjct: 1054 VIDLEQLRFAQVKTILAGSEHRRVSSGEKTPLQKRGVSQEVHIEVSSHVRAHAQFKSLYE 1113 Query: 1104 SLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLR 1147 L H G+ V L+ D + + +VS ++ L+ Sbjct: 1114 ILSAHTGGSGEVFLHMHVDDRTYVVYVP-SCKVSATEVFAQQLK 1156 >UniRef50_Q11YX8 DNA polymerase III, alpha subunit n=3 Tax=Bacteria RepID=Q11YX8_CYTH3 Length = 1194 Score = 1219 bits (3155), Expect = 0.0, Method: Composition-based stats. Identities = 421/1210 (34%), Positives = 655/1210 (54%), Gaps = 86/1210 (7%) Query: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 P F HL VHS +S++DG A LV KA M ALA+TD N+ G+ +F IK Sbjct: 2 PDFAHLHVHSQFSLLDGAASIKGLVGKAVKNEMKALALTDHGNMHGIFQFVAEAVKNNIK 61 Query: 64 PIVGADFNVQCDLLGDEL--------THLTVLAANNTGYQNLTLLISKAYQRGYGAAGPI 115 PIVG +F + D H +LA N GY+NL L S Y G P Sbjct: 62 PIVGCEFYLVEDRFKKNFTKDNKDVRYHQLLLAKNPEGYKNLIKLCSLGYIEGQYGKYPR 121 Query: 116 IDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGR 175 ID++ +++ ++GLI + +V R++L ++ ++ + F + Y++EL R Sbjct: 122 IDKELILQYHKGLIATTCCLGAEVPRTILAKGEEAGEKAFKWWLDLFGEDYYVELQRHDI 181 Query: 176 PDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP------- 228 ++ ++LA +P++A+ND ++D D +AH+I + I+ G P Sbjct: 182 KEQNIVNEVLIKLARKYQVPIIASNDSHYVDQKDSNAHDILLCINTGEKQSTPTMKDFSD 241 Query: 229 -------KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF 281 +R + Q Y +++EEM LF+DIPEA+ NT++I + + + LP + Sbjct: 242 DESMMKGRRFAFANDQFYFKTKEEMSTLFSDIPEAIDNTMQIVDKVEILKLKQDILLPNY 301 Query: 282 PTG--DMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPG 339 + ++YL EG R + P E ERL+ EL I MGF G Sbjct: 302 EIPSTFLDQDNYLQHLTYEGARNRYVDVTP----------EIKERLDFELHTIRTMGFAG 351 Query: 340 YFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSM 399 YFLIV +FI ++ GV +GPGRGS AGS VAY + IT++DP++++LLFERFLNP+R SM Sbjct: 352 YFLIVQDFINKGREIGVLIGPGRGSAAGSAVAYCIGITNIDPIKYNLLFERFLNPDRKSM 411 Query: 400 PDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRI 459 PD D DF E R +VI++V + YG+ V+QI+T+GTMAAK I+DV RVL P + + Sbjct: 412 PDIDTDFDDEGRQKVIDYVVEKYGKKQVAQIVTYGTMAAKMSIKDVARVLDLPLQESNAL 471 Query: 460 SKLIPPDPGMTLA--------------------------KAFEAEPQLPEIYEADEEVK- 492 +KL+P PG+ L + E +L E+ + + + Sbjct: 472 AKLVPDKPGIELNWVMKGPMKASDKKNEKDKTLTEELTPEDIENVKKLREMLDDEGTLAS 531 Query: 493 ALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLV 552 ++ A LEG R G HA G++IAP + D P++ ++ + VTQFD +E AG++ Sbjct: 532 DVLKEALILEGSVRGTGIHAAGIIIAPKDLYDIIPVFTAKDSELLVTQFDGKVIEDAGVI 591 Query: 553 KFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLE 612 K DFLGL+TLTII AL+MI + +DI IPLDD K+F++ Q+ ET A FQ E Sbjct: 592 KMDFLGLKTLTIIRDALKMIEENHGI----KIDIDYIPLDDAKTFELYQKGETNATFQFE 647 Query: 613 SRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHES 672 S GM+ + L+PD FED+IA+ AL+RPGP++ + FI RK G+EEI Y Sbjct: 648 SAGMQKHLINLKPDKFEDLIAMNALYRPGPIE--YIPKFIQRKLGKEEIVYDL-----PE 700 Query: 673 LKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAE 732 ++ L TYGI +YQEQVM ++Q L+G+T G AD+LR+AMGKK + K + F EGA Sbjct: 701 MEEYLGDTYGITVYQEQVMLLSQKLAGFTKGDADVLRKAMGKKDRATLDKMKGKFIEGAV 760 Query: 733 KNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMD 792 G++ ++ K++ E FA Y FNKSHS YA V+YQT +LKA+YP+E+MA+V+T ++ Sbjct: 761 AKGLDPKVCEKVWTDWEAFAQYAFNKSHSTCYAFVAYQTGYLKANYPSEYMASVLTHNLS 820 Query: 793 NTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEA 852 N +K+ ++EC RMG+ +L PD+N Y F VN +G+I +G+GAIKGVGEGP++AI++ Sbjct: 821 NFDKISFFMEECQRMGMAVLGPDVNESSYQFSVNSNGQIRFGMGAIKGVGEGPVQAIVDE 880 Query: 853 RNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGP-HRAALMNS--------LG 903 R G F++ FD +R + + ++++ E L ++GA D HRA N L Sbjct: 881 RKANGPFKDFFDFVSRVNLRAVSKKTFESLALAGALDYFTELHRAQYFNVAERETITFLE 940 Query: 904 DALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTG 963 A++ + + Q+ +FG + C+ W L E+E +G Y++G Sbjct: 941 KAIRYGNAFQTEDDSNQSSLFGDSSSAKPA-PPKITPCEEWGNIEKLKKEKEIVGFYISG 999 Query: 964 HPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRS 1023 HP++Q+ EI+ + L+++ + +GK +T AG+V V +K G + T++D S Sbjct: 1000 HPLDQFKLEIDNFCNC-PLENVMSSPQGKDLTVAGIVTKVNVRQSKNGKPFVLFTIEDYS 1058 Query: 1024 GRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDD-FSGGLKMTAREVMDIDEAREKYAR 1082 G L++ LF + K+ + L + G + G L + + R K + Sbjct: 1059 GSLDLALFGEDYLKHAHFINIGEFLFMKGSLKPKWGREGELDFKITTTQLLADVRAKLCK 1118 Query: 1083 GLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYY-QRADARARLRFGATWRVSPSDR 1141 + IS+ QI+ + + + + H+ G+ ++L + + F ++RV P++ Sbjct: 1119 SVNISVNLDQINAITVVEIDRIVSEHK-GSCLLYLTLTKNTNEHTVKTFSRSYRVDPNNV 1177 Query: 1142 LLNDLRGLIG 1151 L++L L G Sbjct: 1178 FLSELNKLEG 1187 >UniRef50_B5VUX8 DNA polymerase III, alpha subunit n=2 Tax=Arthrospira RepID=B5VUX8_SPIMA Length = 1219 Score = 1219 bits (3155), Expect = 0.0, Method: Composition-based stats. Identities = 438/1225 (35%), Positives = 690/1225 (56%), Gaps = 96/1225 (7%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS FV L +HSDYS++DG ++ LV +A LGMPA+A+TD + G ++ Sbjct: 1 MS---FVGLHIHSDYSLLDGASQLPQLVSRAVELGMPAIALTDHGVMYGAIELIKICRSK 57 Query: 61 GIKPIVGADFNV-----QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAA--- 112 GIKPI+G + V G + H VLA N GY+NL L + ++ +G+ Sbjct: 58 GIKPIIGNEMYVLNADVTVQQRGIKKYHQVVLAKNTQGYKNLVKLTTISHLKGFQGKGIF 117 Query: 113 -GPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELI 171 P I+++ L E +EGLI+ S G+V +++L+ + + V +Y+ F D Y+LE+ Sbjct: 118 ARPCINKELLEEYHEGLIVTSACLGGEVPQAILQRRMDIARQTVEWYKRVFGDDYYLEIQ 177 Query: 172 RTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRP 231 G P++ A V+LA + +VATND FI +D +AH+ + I+ + + R Sbjct: 178 DHGSPEDRIVNVALVQLAREFEVKIVATNDSHFISCNDVEAHDALLCINTQKLITEDNRL 237 Query: 232 RNYSPQQYMRSEEEMCELFAD------IPEALANTVEIAKRCN-VTVRLGEYFLPQFP-T 283 R YS +Y++S EEM +LF D I EA+ANT+E+A++ T LGE +P +P Sbjct: 238 R-YSGTEYLKSAEEMMQLFRDHLPDEVIKEAIANTLEVAEKVEPYTGILGEPRIPDYPIP 296 Query: 284 GDMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLI 343 + + + YL + A EGL++RL + + R + +P Y ERLE EL+++ +MGF YFL+ Sbjct: 297 PNHTADTYLEEIAWEGLKKRL-----NAQGRSEIKPVYRERLEYELKMMQKMGFATYFLV 351 Query: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 V ++I+ ++DN +PVGPGRGS AGSLVAYAL+IT++DP+ LLFERFLNPER SMPD D Sbjct: 352 VWDYIKHARDNHIPVGPGRGSAAGSLVAYALQITNIDPVHHGLLFERFLNPERKSMPDID 411 Query: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 DFC+++RD++I++V YG + V+QIITF M +KAV++DV RVLG PY D+++K+I Sbjct: 412 TDFCIDRRDEMIKYVTSKYGEEKVAQIITFNRMTSKAVLKDVARVLGIPYSKSDQMAKMI 471 Query: 464 PPDPGMTLA-----KAFEAEPQLPEIYEADEE--------------VKALIDMARKLEGV 504 P G P+ + Y+ D V+ +DMA ++EG Sbjct: 472 PVSRGKPTKLKVMISDQSPSPEFKQAYDNDFVPIKNDAGEEVGTIAVRQWVDMAIRIEGT 531 Query: 505 TRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTI 564 + G HA GVVI+ + + PL + +G +TQ+ D+E GL+K DFLGL+ LTI Sbjct: 532 NKTFGVHAAGVVISKQPLDEIVPLQRNNDGS-VITQYFMEDIEALGLLKMDFLGLKNLTI 590 Query: 565 INWALEMINKRRAKNGEP---------------PLDIAAIPLDDKKSFDMLQRSETTAVF 609 I L I++ + +P + +P D K++ +L+R + +F Sbjct: 591 IQRTLNYISQNHHLDIDPYNLAADERKAMDILAKGAVKKMPEDVAKTYKILERGDLEGLF 650 Query: 610 QLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQ 669 QLES GM+ ++K L+P ED+ +++AL+RPGPL +G++ FI+RKH RE I Y + Sbjct: 651 QLESSGMRQIVKDLKPSSIEDISSILALYRPGPLDAGLIPQFINRKHKREPIRY-----E 705 Query: 670 HESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAE 729 H+ L+P+L TYGI++YQEQ+M++AQ L+GY+LG AD+LRRAMGKKK EM K R F + Sbjct: 706 HKLLEPILNETYGILVYQEQIMKMAQDLAGYSLGQADLLRRAMGKKKASEMQKHRETFID 765 Query: 730 GAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTA 789 GA +NG+ +A +FD + KFA Y FNKSHS AY ++YQT +LKA+YP E+MAA++T Sbjct: 766 GATRNGVPQNIAEHLFDQMVKFAEYCFNKSHSTAYGYITYQTAYLKANYPTEYMAALLTE 825 Query: 790 DMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAI 849 + NT+KV ++ C +G+ ++PPDIN F ++ IV+G+ AIK VG+G IE + Sbjct: 826 NSGNTDKVRAYIESCKHLGIDVVPPDINRSNVDFTPIEN-RIVFGLSAIKNVGDGAIEHL 884 Query: 850 IEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAA 909 + R +GG FR L DLC R + + +N R LE LI SGAFD L +R + L + A Sbjct: 885 LSVREEGGPFRSLADLCDRINLQMVNSRALESLIKSGAFDSLHANRKQSIEYLNIVIPWA 944 Query: 910 DQHAKAEAIGQADMFGVL-----AEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGH 964 AK IGQ ++F ++ E ++ + + L E+E LG Y++ H Sbjct: 945 QDRAKNREIGQTNLFDLVNYATTESNSPSGEPAFPKGDDYAPKDKLQFEKELLGFYVSDH 1004 Query: 965 PINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSG 1024 P+ L V L + + + A +++ + +TK+G+R+ L+D +G Sbjct: 1005 PLKSLLDSGI-LPDNVTLDKLPEQKSKAAVKVAVILINIKPHLTKKGDRMAFLLLEDLTG 1063 Query: 1025 RLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEARE------ 1078 +++ ++F + + QQ L+++ +++V + ++ + DE + Sbjct: 1064 QIDAVVFPSSYEAVQQELKENAVVVVE--GKVEKRDDQTQIIVDAIKSADELIKPNNQPG 1121 Query: 1079 ---------KYARGLAISLTDRQIDD-QLLNRLRQSLEPHRS----GTIPVH-LYYQRAD 1123 + + + LT +I + L L+ LE +RS G +P+ + + Sbjct: 1122 SPSQLPPNLAASSVIQLCLTPEEICQLERLQILKGILEEYRSNQGLGRVPIQAIVDGQVS 1181 Query: 1124 ARARLRFGATWRVSPSDRLLNDLRG 1148 + +RFG+ + V + ++ L+ Sbjct: 1182 PKPLVRFGSQFWVENQEAIVQQLKT 1206 >UniRef50_B2UNA1 DNA polymerase III, alpha subunit n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UNA1_AKKM8 Length = 1174 Score = 1218 bits (3152), Expect = 0.0, Method: Composition-based stats. Identities = 450/1190 (37%), Positives = 670/1190 (56%), Gaps = 73/1190 (6%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYG---------A 56 FVHL H++YS++DG L+ + + +GMPA+A+TD NL G ++ A Sbjct: 5 FVHLHNHTEYSLLDGAVHIKDLIAECSRMGMPAVAVTDHGNLFGAIELVMETNSLNKSVA 64 Query: 57 G---------HGAGIKPIVGADFNVQCDLL--------GDELTHLTVLAANNTGYQNLTL 99 +KPI G + + + + THL +LA N TG+QNL Sbjct: 65 AWNKEHPEGPQKQEVKPIFGCEVYLSPTPISVKKQLPGRRKYTHLLLLAENETGWQNLVK 124 Query: 100 LISKAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYE 159 L+S+++ G+ P +D + L E +EGLI + G + LL +E + + Sbjct: 125 LVSRSHLEGF-YYKPRVDMETLREFHEGLICCTACIAGPLNEWLLNDQPEKAEEALLALK 183 Query: 160 EHFPD-RYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVA 218 + F D F+EL G +++ L V +A P+VATNDV F+ D D H++ + Sbjct: 184 DIFGDDNIFVELQDHGMEEQKKCLPELVRIARKTNTPIVATNDVHFLRKEDHDMHDVLIC 243 Query: 219 IHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEY-- 276 I L PKR R YS + Y++S EEM E+F D PEA+ NT++IA+RCNV ++L Sbjct: 244 IGTNEKLASPKRMR-YSTEVYLKSPEEMREVFKDYPEAVENTLKIAERCNVAIKLDSTST 302 Query: 277 -FLPQFPTGDMST-EDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQ 334 P+F T D S+ E+YL K +GLEER ER+ E +RL+ EL +INQ Sbjct: 303 EKYPEFGTPDGSSREEYLRKVCYKGLEERYGK------ERVAADKELRDRLDYELGIINQ 356 Query: 335 MGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNP 394 + FP YFLI +FI W+KD+ +PVGPGRGS AGSLVAYA+KIT++DPL F L+FERFLNP Sbjct: 357 LKFPSYFLITADFINWAKDHDIPVGPGRGSAAGSLVAYAMKITNIDPLRFGLIFERFLNP 416 Query: 395 ERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYG 454 ERVS PD D+DFC +R +VI++V YG AVS IIT+GTM AK+V+RDV RV+ Y Sbjct: 417 ERVSPPDIDIDFCQTRRPEVIDYVRQKYGERAVSHIITYGTMGAKSVLRDVARVMDMSYA 476 Query: 455 FVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGG 514 DRISKLI P +TL ++++ +L E+ +DE L A +LEG+ RN G HA G Sbjct: 477 DGDRISKLIETGPKVTLQSSYKSNEELRELIASDEGYAELWGYATRLEGLIRNVGVHAAG 536 Query: 515 VVIAPTKITDFAPLYCDEEGK---HPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEM 571 VVI + + L D+ V Q D S + GL+K DFLGL+TLT+++ A Sbjct: 537 VVIGDRPLDEHVALTRDDLSDPHAAVVAQCDMSAIYEVGLLKMDFLGLKTLTVMHDA--- 593 Query: 572 INKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDM 631 ++ A+ P + ++PLDD+++ D+L R +T VFQLES GM D +R ED+ Sbjct: 594 --EQYARWRVPEFKLDSVPLDDRETLDLLNRGDTMGVFQLESGGMVDTCRRYGIQKIEDI 651 Query: 632 IALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVM 691 I L+AL+RPG +Q +D I+ K G ++ Y +H L+ V TYG+++YQEQV Sbjct: 652 IDLLALYRPGAMQ--FMDEMIEVKKGLRQVEY-----EHPLLEQVSGETYGVMIYQEQVQ 704 Query: 692 QIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEK-NGINAELAMKIFDLVEK 750 A++L+GYTLGGAD+LRRAMGKK P +MAK+++ F EG K N I+ + A IFD +EK Sbjct: 705 AAAKLLAGYTLGGADLLRRAMGKKDPAKMAKEKAHFVEGCWKTNQIDEKTATAIFDKIEK 764 Query: 751 FAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLK 810 FAGYGFNKSHSA Y +SY T +LKAH+P EF+ +M+ + +N +K+ + E RMG++ Sbjct: 765 FAGYGFNKSHSACYGHISYWTAYLKAHFPVEFLCGLMSNEANN-DKIGVFIQEANRMGIE 823 Query: 811 ILPPDINSGLYHFHVND----DGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLC 866 ILPPD+N + F + YG+ AIK VGEG ++ ++E R K G F + D+C Sbjct: 824 ILPPDVNKSMLKFTPEKMPSGKLAVRYGLAAIKNVGEGAMQILLEEREKNGEFSSMEDIC 883 Query: 867 ARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGV 926 R D+K +N+++LE LI +GA D R L + AL A Q K +A+GQ +F + Sbjct: 884 NRLDSKSVNKKILESLIRAGALDWTLEPRCVLFERVDLALSGASQVHKDKALGQGSLFDM 943 Query: 927 LAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEI--ERYVGGVRLKD 984 E P ++ + W ++ + E++ LG Y GHP++ I E+Y + Sbjct: 944 TFEAPRVKDE--PAVPEWSKEQRMGDEKDLLGAYFCGHPLDSMRGVIDAEKYTRIGLIDT 1001 Query: 985 MHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQL--- 1041 + P E + AG+V + ++K G + I TL+D +G +EV+L++D +K Q++ Sbjct: 1002 LEPHELKQKHQIAGMVRSVTPKISKAGRKFAILTLEDFTGSIEVLLWSDVYEKAQEMEGG 1061 Query: 1042 LEKDRILIVSGQVSFDDFSGGLKMTAREVMDI----DEAREKYARGLAISLTDRQIDDQL 1097 LE + V + DD + + A+ + + +++ L I ++ + + Sbjct: 1062 LEPGVFVSVRANIREDDRTSSKSVAAQSIDPLGGKKRKSKSGDQGPLNIIVSPLRHTRKN 1121 Query: 1098 LNRLRQSLEPHRSGTIPVHLYYQRA-DARARLRFGATWRVSPSDRLLNDL 1146 L ++R L+ + G V+L + + L +RV+ L +L Sbjct: 1122 LEQIRDILKRY-PGRSKVNLTIKDSLGHSQILELDERFRVNRCPELETEL 1170 >UniRef50_B0VJC8 DNA polymerase III, alpha subunit n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VJC8_9BACT Length = 1146 Score = 1217 bits (3149), Expect = 0.0, Method: Composition-based stats. Identities = 411/1163 (35%), Positives = 638/1163 (54%), Gaps = 48/1163 (4%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS FVHL H+ YSM+DG + ++K A MPA+AITD NL G + FY A Sbjct: 1 MS---FVHLHNHTQYSMLDGACRVDRMIKLAKEYAMPAVAITDHGNLFGAIDFYKTAKNA 57 Query: 61 GIKPIVGADFNVQCDLLGDEL------THLTVLAANNTGYQNLTLLISKAYQRGYGAAGP 114 GIKPI+G + + L E HL +LA N GY+NL L S +Y +G+ P Sbjct: 58 GIKPILGIEAYIINGDLESETGKNEIRYHLILLAQNEQGYKNLMKLSSYSYIKGF-YYKP 116 Query: 115 IIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTG 174 I + L + +EGLI LS G++ + +E +Y++ F + +++E+ Sbjct: 117 RISKTLLKQYSEGLICLSACVKGEIPALIYNDRMQQAEEVALWYKDLFQEHFYIEIQDHN 176 Query: 175 RPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNY 234 E+ + ++LA+ +P+V TND +++ +D++AH+I + I G L DP R Sbjct: 177 LEPEKKIMPRLIDLAKKLEIPMVLTNDCHYLNKNDYEAHDILLCIQTGKLLHDPDRLHYG 236 Query: 235 SPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF--PTGDMSTEDYL 292 + Q Y +S EEM ELF D+PEA NT++IA ++ + ++ LP P + +YL Sbjct: 237 TNQLYFKSPEEMKELFPDVPEAYNNTLKIADMVDLELHYDKFLLPNIETPPEFKTMGEYL 296 Query: 293 VKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSK 352 E + + L +R+E EL+VI++MGF GYFLIV + I ++ Sbjct: 297 RFLCYENAKIKYPDL----------NETIKQRIEYELEVIDRMGFNGYFLIVKDIIDNAR 346 Query: 353 DNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRD 412 VPVGPGRGSGAGS+VAY L IT +DPL++ L+FERFLNP+R+SMPD D+DFC + R Sbjct: 347 KQSVPVGPGRGSGAGSIVAYLLDITQIDPLQYGLVFERFLNPDRISMPDIDIDFCAQNRS 406 Query: 413 QVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA 472 +VI+++ YGR++V+QIITF T+ AK+VI+DV RVL P + I+K I TL Sbjct: 407 KVIDYIIQRYGRESVTQIITFSTLGAKSVIKDVARVLSVPASEANAITKTI--QGNKTLD 464 Query: 473 KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDE 532 +A+ P+ + +++ + + ++ LEG+ R H GVVIAP +TD+ PL C Sbjct: 465 EAYNQYPEFSSLINSNDLYRTIFKHSKVLEGLVRQTSVHPAGVVIAPGDLTDYVPLACST 524 Query: 533 ---EGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAI 589 E K + QF+ + L+K D LGL+ LT+I ++++ + + +DI I Sbjct: 525 QKGEEKVILVQFEGKWLNDLKLLKMDILGLKNLTLIQKTIDLVKQ----AQDIDIDINHI 580 Query: 590 PLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVD 649 L+DKK +++L + ET VFQ ES GM+ + L+P+ ED+IA+VAL+RPGP+Q +D Sbjct: 581 SLEDKKVYNILGKGETDGVFQFESDGMRKYLIELKPNKIEDLIAMVALYRPGPMQ--FID 638 Query: 650 NFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLR 709 ++I RKHGRE++ Y H ++ L+ TYG+ +YQEQVMQIA+ + G+T G AD LR Sbjct: 639 SYIARKHGREKVVY-----DHPLMENALKETYGVTIYQEQVMQIAREMGGFTGGEADSLR 693 Query: 710 RAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSY 769 +AMGKK + M + + F +GA+ + + KI+ +FA Y FNKSH+ YALV+Y Sbjct: 694 KAMGKKNSDLMQQYQEKFRQGAKAQNVPDAVIEKIWQDWLRFAEYAFNKSHATCYALVAY 753 Query: 770 QTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDG 829 QT +LKA+YP EFMAA+++ + D+ K+ G ++ C +MG+KI+PP+IN F V Sbjct: 754 QTAYLKAYYPVEFMAALLSLE-DDPTKIPGKIEVCKKMGIKIIPPNINRSDSEFRV-HGK 811 Query: 830 EIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFD 889 E+++G+ AIK +G+ + IIE RN+ G + +F+ C R D+ +N+ +LE LI SGA D Sbjct: 812 EVLFGLRAIKNLGDAAMRDIIEDRNQNGPYTSIFEFCNRLDSTSVNKTILESLIASGAMD 871 Query: 890 RLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIE--QSYASCQPWPEQ 947 L RA N + AL+ + K GQ+ +F + E E S +PW Sbjct: 872 ELEGTRAQKWNVIELALQFSSNDQKDRKRGQSTIFDFMDTEDEDNNYYPPLPSVEPWSYI 931 Query: 948 VVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMV 1007 L+ E+E LG YL+GHP+ +Y I+ T+ + AG++ Sbjct: 932 YQLEKEKEVLGFYLSGHPLFEYRSLIKHLTNANSST--GKTKNNGELLIAGIINNISKKK 989 Query: 1008 TKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGG--LKM 1065 +GN I +D G+ EV LF +Y + + ++ + G S + + L++ Sbjct: 990 DNKGNPIAFVEFEDLCGKFEVPLFNKDFMQYHKKISPGKVFFIIGNKSTFNGNEDSILRI 1049 Query: 1066 TAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADAR 1125 ++D E + + + I++ + + + LL L + + G + +Q D Sbjct: 1050 LPNALIDFKELPSELSGEIKINIPNEHLKNGLLTELGNRISRNT-GKFKLITKFQSEDMN 1108 Query: 1126 ARLRFGATWRVSPSDRLLNDLRG 1148 P + LLN L Sbjct: 1109 DYQLESRKLFF-PDEALLNWLEK 1130 >UniRef50_C6JJK2 DNA-directed DNA polymerase III alpha subunit n=5 Tax=Fusobacterium RepID=C6JJK2_FUSVA Length = 1138 Score = 1216 bits (3146), Expect = 0.0, Method: Composition-based stats. Identities = 420/1165 (36%), Positives = 679/1165 (58%), Gaps = 41/1165 (3%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 FVHL +H++YS++DG+ K + + AL M A+AITD NL G+++FY GIKP Sbjct: 4 NFVHLHLHTEYSLLDGVGKIDDYLDRTKALNMQAIAITDHGNLFGVLEFYKKAIKKGIKP 63 Query: 65 IVGADFNVQCDLLGDE---LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL 121 I+G + V + ++ + HL +LA NN GYQNL + S++Y +G+ P ID+++L Sbjct: 64 IIGLEAYVSEFSMLEKEGRIFHLVLLAENNKGYQNLLKISSESYIKGF-YYKPRIDKEFL 122 Query: 122 IELNEGLILLSGGRMGDVGRSLLRGNSAL-VDECVAFYEEHFP-DRYFLELIRTGRPDEE 179 +EG+I LS G++ R +L S VDE V Y + F D +++E+ G + Sbjct: 123 KMHSEGIIALSACMQGEIPRRILDNESEEKVDEIVNEYVDIFGKDNFYIEVQANGVKGQT 182 Query: 180 SYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQY 239 + LA+ L +VATND +++ + +I + + G + D KR R + + + Sbjct: 183 ALNEKLYNLAQKHQLKMVATNDTHYVNEGEHTLQDILICVQTGAKVADEKRMRIETDELF 242 Query: 240 MRSEEEMCE-LFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGD--MSTEDYLVKRA 296 ++S E++ + L A EA+ NT+EIA+RCNV + G++ P++ + E++L K Sbjct: 243 LKSREQIIDGLGAKYLEAVNNTIEIAERCNVNIEFGKFKFPEYEIPSCVKTIEEFLRKLV 302 Query: 297 KEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGV 356 GL +R ER+E EL VI +MG+ YF++V +FI ++K N + Sbjct: 303 YFGLSKRYPHGL---------TISVLERVEYELSVIEKMGYAAYFVVVWDFIDYAKRNRI 353 Query: 357 PVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIE 416 P+GPGRGS AGSLVAYAL+IT+LDPL+++L+FERFLNPER+SMPD D+D C E+R +VIE Sbjct: 354 PIGPGRGSAAGSLVAYALRITELDPLDYNLIFERFLNPERISMPDIDIDICQERRQEVIE 413 Query: 417 HVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFE 476 +V YG D V+QIITFGTM A+A IRDVGRV+ P VD I+KL+P T+ + Sbjct: 414 YVIRKYGEDKVAQIITFGTMKARAAIRDVGRVMDTPLSKVDSIAKLVPF--NATIQQTLN 471 Query: 477 AEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKH 536 + +Y D E++ +ID++ +LE R+A HA G+VI +TD PLY D + K Sbjct: 472 NVEEFKNMYLNDPEIQKVIDISARLENKVRHASIHAAGIVITKDPLTDTVPLYSDNKNKV 531 Query: 537 PVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKS 596 TQ+ ++E GL+K DFLGLR LT + ++ I + ++ ++++ IPL+ KK Sbjct: 532 VSTQYQMKELEDLGLLKMDFLGLRNLTNLQRTIDYIKEDLGED----IELSEIPLNSKKV 587 Query: 597 FDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKH 656 ++ML R +T+ VFQ+ES+G++ ++ +L+PD FED+IAL+AL+RPGPL SGMVD+FI+ K+ Sbjct: 588 YEMLSRGDTSGVFQMESQGIRKILLKLKPDRFEDIIALLALYRPGPLGSGMVDDFINGKN 647 Query: 657 GREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKK 716 G EI YP H SL+ L+ TYG+ILYQEQVM+IA +++ Y+LG AD+LRRAMGKK Sbjct: 648 GTSEIKYP-----HPSLELTLKETYGVILYQEQVMKIANIMANYSLGEADLLRRAMGKKN 702 Query: 717 PEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKA 776 + M + R F E + NG E A+++F+L++KFAGYGFNKSHSAAYAL++Y T + KA Sbjct: 703 IQIMEENREKFVERSMANGYTKEKAIEMFELIDKFAGYGFNKSHSAAYALIAYWTAYFKA 762 Query: 777 HYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIG 836 +Y + A++MT++M + E + +++ LK+ PD+N F V+ +G I++ + Sbjct: 763 YYMKHYYASLMTSEMSHVEDIAFYMEDAKVHNLKLHLPDVNRASPKFIVDKEG-IIFSLA 821 Query: 837 AIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRA 896 AIK VGEG I+E N+ G ++ D RT LN++ LE LI++GA D L +R Sbjct: 822 AIKNVGEGVSGKILEECNENGKYKNFEDFVVRTRKHGLNKKALESLILAGALDGLPGNRR 881 Query: 897 ALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERET 956 S+ L A + K + I Q ++FG + + + + +L E+E Sbjct: 882 QKFESVDKILDYATRKIKEDEIQQMNLFG--EAKSSLGVFTLPQIPEYSLEELLAREKEY 939 Query: 957 LGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKR-GNRIG 1015 LG Y + HP++ Y + IE Y R+ ++ + ++ G++ + +VTK+ G + Sbjct: 940 LGFYFSAHPLDNYRRLIEVYR-LSRIAELKEEKNVQIFRTCGILREIKKIVTKKTGQIMC 998 Query: 1016 ICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSG--GLKMTAREVMDI 1073 + L+D ++ ++F + + + +I+ + G V D F G K+ + + + Sbjct: 999 LFELEDYYDKINCIVFPRDYAENAHIFMEGKIVYIEGSVQTDYFKGAETKKLIVKNIKFL 1058 Query: 1074 DEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGAT 1133 D+ + + ++ D +RL++ + + G + + + Sbjct: 1059 DDIVRD--KKFVAYILLKEEDKDKFSRLKKIILSY-PGETKLSFAIKTKTVKEI--RTTK 1113 Query: 1134 WRVSPSDRLLNDLRGLIGSEQVELE 1158 ++++PS ++++ LIG +++ ++ Sbjct: 1114 YKIAPSRLFIDEIIDLIGIDKLTIK 1138 >UniRef50_A0YQD0 DNA polymerase III subunit alpha n=1 Tax=Lyngbya sp. PCC 8106 RepID=A0YQD0_9CYAN Length = 1206 Score = 1215 bits (3144), Expect = 0.0, Method: Composition-based stats. Identities = 432/1211 (35%), Positives = 681/1211 (56%), Gaps = 79/1211 (6%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS FV L +HSDYS++DG ++ L+++A L MPA+A+TD + G ++ Sbjct: 1 MS---FVGLHIHSDYSLLDGASQLPQLIERAVELKMPAIAVTDHGVMYGAIELIKQCRSK 57 Query: 61 GIKPIVGADFNVQCDLLGD-----ELTHLTVLAANNTGYQNLTLLISKAYQRGYGAA--- 112 GIKPI+G + V + + H VLA N GY+NL L + ++ +G+ Sbjct: 58 GIKPIIGNEMYVINADVTQQQGRLKKYHQVVLAKNTKGYKNLVKLTTISHLQGFQGKGIF 117 Query: 113 -GPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELI 171 P I+++ L + +EGLI+ S G++ +++L+G S + + +Y++ F + Y++E+ Sbjct: 118 ARPCINKELLKQYHEGLIVTSACLGGELPQAILQGRSDVARKVAKWYQDVFGEDYYIEIQ 177 Query: 172 RTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRP 231 G P++ V++A + ++ATND FI D +AH+ + I+ + + KR Sbjct: 178 DHGSPEDRIVNVELVKIAREFDIKIIATNDSHFISCYDVEAHDALLCINTQKLITEDKRM 237 Query: 232 RNYSPQQYMRSEEEMCELFAD------IPEALANTVEIAKRCN-VTVRLGEYFLPQFP-T 283 R YS +Y++S EEM +LF D I EA+ANT+E++++ T LGE +P +P Sbjct: 238 R-YSGTEYLKSAEEMAQLFRDHLPDDVIREAIANTIEVSEKIEPYTGILGESRIPDYPIP 296 Query: 284 GDMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLI 343 + +++ YL + +GL ERL + R + P Y ERLE EL+++ +MGF YFL+ Sbjct: 297 PNHTSDTYLEEVTWKGLIERLQDQI-KIQTRSEIPPVYRERLEYELKMMQKMGFSTYFLV 355 Query: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 V ++I++++D+ +PVGPGRGS AGSLVAY+L IT++DP+ LLFERFLNPER SMPD D Sbjct: 356 VWDYIKYARDHQIPVGPGRGSAAGSLVAYSLGITNIDPVHHGLLFERFLNPERKSMPDID 415 Query: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 DFC+ +RD++I +V + YG D V+QIITF M +KAV++DV RVLG PY D+++KLI Sbjct: 416 TDFCIARRDEMIRYVTNQYGEDKVAQIITFNRMTSKAVLKDVARVLGIPYSKSDQMAKLI 475 Query: 464 PPDPGMTLAKAFE-----AEPQLPEIYEADEE--------------VKALIDMARKLEGV 504 P G P+ YE ++ V+ IDMA ++EG Sbjct: 476 PVSRGKPAKLKVMISDDTPSPEFKSAYETEDVPIKNDLGNEVGTIPVRQWIDMAIRIEGT 535 Query: 505 TRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTI 564 + G HA GVVI+ + + PL + +G +TQ+ D+E GL+K DFLGL+ LTI Sbjct: 536 NKTFGVHAAGVVISKQPLDEIVPLQRNNDGA-VITQYFMEDIEALGLLKMDFLGLKNLTI 594 Query: 565 INWALEMINKRRA---KNGEPPLDI------------AAIPLDDKKSFDMLQRSETTAVF 609 I +E+I + + P D +P D +K++ +L+R + VF Sbjct: 595 IQRVVELIEENHHFKMIPDQLPFDERKACQILAKGKIKKLPEDIQKTYKLLERGDLEGVF 654 Query: 610 QLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQ 669 QLES GM+ +++ L+P ED+ +++AL+RPGPL +G++ FIDRKH R I Y + Sbjct: 655 QLESSGMRQIVRDLKPSNIEDISSILALYRPGPLDAGLIPKFIDRKHKRVPIEY-----E 709 Query: 670 HESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAE 729 H L+ +L+ TYGI++YQEQ+M++AQ L+GY+LG AD+LRRAMGKKK EM KQR F + Sbjct: 710 HPLLESILQETYGILVYQEQIMKMAQDLAGYSLGQADLLRRAMGKKKLSEMQKQREAFID 769 Query: 730 GAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTA 789 G+ KNG++ ++A +FD + FA Y FNKSHS AY V+YQT +LKA+YP E+MAA++T Sbjct: 770 GSTKNGVSKQIAEHLFDQMLAFAEYCFNKSHSMAYGFVTYQTAYLKANYPVEYMAALLTE 829 Query: 790 DMDNTEKVVGLVDECWR-MGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEA 848 + DNT+KV +D C R + +K++ PD+N F DGEI++G+ AIK VGE IE Sbjct: 830 NSDNTDKVQKYIDSCQRSLKIKVVSPDVNHSNVDFTP-SDGEIIFGLSAIKNVGETAIEN 888 Query: 849 IIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKA 908 I+ AR +GG F +L D C+R +N R LE LI GA D L +R + L + Sbjct: 889 ILAARKEGGKFSDLPDFCSRVSLHIVNSRALESLIKCGALDSLHQNRKQAIEYLNFLIPW 948 Query: 909 ADQHAKAEAIGQADMFGVLAE----EPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGH 964 A AK IGQ+ +F +L + + + L E+E LG Y++ H Sbjct: 949 AQGKAKDREIGQSSIFDLLGDTTTKSTNEGAPKPPKTDDFSTPEKLQFEKELLGFYVSEH 1008 Query: 965 PINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSG 1024 P+ +K + L+D+ +GK + ++V + VTK+G + ++D SG Sbjct: 1009 PLQSVIKAYP-VEDAITLQDLAE-HKGKKVKVFLVIVEVKRHVTKKGETMAFLKVEDMSG 1066 Query: 1025 RLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEARE-----K 1079 + E ++F + LE+++ +V+G+V D +++ E ++ + + Sbjct: 1067 QAEAIVFPRTFQEILTSLEENKSFLVTGKV--DKQEEKIQLIIEEAESVEHLLQSVKPTE 1124 Query: 1080 YARGLAISLTDRQIDDQ-LLNRLRQSLEPHRSGTIPVHLYYQRADARARL-RFGATWRVS 1137 + + LT +I+ L+ L+ LE + + + L RFG+ + V Sbjct: 1125 KLPSVRLYLTPEEIEQTSKLDNLKTILEDYNGNPDQKKYPVEAVVSNQYLVRFGSRFWVE 1184 Query: 1138 PSDRLLNDLRG 1148 + +++ L+ Sbjct: 1185 DREGIVDRLKS 1195 >UniRef50_D1KB28 DNA polymerase III, alpha subunit n=1 Tax=uncultured SUP05 cluster bacterium RepID=D1KB28_9GAMM Length = 1150 Score = 1214 bits (3142), Expect = 0.0, Method: Composition-based stats. Identities = 517/1176 (43%), Positives = 724/1176 (61%), Gaps = 46/1176 (3%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M FVHL HS+YS+ + L + L+ K LGM A+A+TD NL VKFY Sbjct: 1 MPNIDFVHLHCHSEYSVKNSLIRIPKLIDKTKDLGMKAIALTDVGNLFAAVKFYQKSISN 60 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 GIKPI GA+ V+ + +L + GY NL+ LIS +Y G G I + Sbjct: 61 GIKPIFGAELTVKDKAQN---FSVLLLCQDRQGYANLSELISLSYLHGQSVEGVSITTEQ 117 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 180 L+ ++GLI+++ DV L+ + E V F+ F DR++L + RTGR ++E Sbjct: 118 LVNHHQGLIMIAPHTRSDVAHHLMANQALEAREKVQFWASVFTDRFYLSVQRTGRANDEK 177 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 YLH +EL G+P+VATNDV F+ +SD+ AHE R+ I G LDD +R + YS +QY+ Sbjct: 178 YLHLCLELGLESGIPLVATNDVEFLVASDYQAHEARICISQGKLLDDARREKFYSAEQYL 237 Query: 241 RSEEEMCELFADIPEALANTVEIAKRCNVTVRL-GEYFLPQFPTGDM-STEDYLVKRAKE 298 +S +EM LF+D+P+ LAN+VEIAKRCN+ L + +LP FP + S + + +K Sbjct: 238 KSADEMAALFSDLPQLLANSVEIAKRCNLHFELHKKNYLPNFPVPEGLSIAQFFEQESKA 297 Query: 299 GLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPV 358 GL +RL + R YDERL EL VI QM FPGYFLIV +FI WS++N +PV Sbjct: 298 GLGKRLEKI-------KANRKIYDERLTFELGVIVQMDFPGYFLIVADFIAWSRNNDIPV 350 Query: 359 GPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHV 418 GPGRGSGAGSLVAYAL IT++DP++ +LLFERFLNPERVSMPDFD+DFC ++RD+VI +V Sbjct: 351 GPGRGSGAGSLVAYALGITNVDPIKHELLFERFLNPERVSMPDFDIDFCTDRRDEVITYV 410 Query: 419 ADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFE-- 476 A YG++ VSQIIT+G MAAK V+RDVGRVLGHPYGF DRISK IP D + L++A Sbjct: 411 AKKYGQEKVSQIITYGKMAAKGVVRDVGRVLGHPYGFSDRISKSIPNDLKINLSRALGIF 470 Query: 477 ------------AEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524 +L + Y+++E V ALID++ +LEG+ RN G HAGGV+IAP+KI+D Sbjct: 471 DQKDSKEDKDKWYSEELKQRYDSEESVTALIDLSLELEGLVRNVGTHAGGVLIAPSKISD 530 Query: 525 FAPLYCDE-EGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPP 583 F P+Y E V+QFD DVE GLVKFDFLGL LT+I+ ++MI+ + + Sbjct: 531 FCPIYKGPGESDGVVSQFDMKDVEALGLVKFDFLGLSNLTVIDKTVKMIHAKGLSD--EL 588 Query: 584 LDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPL 643 +DI A+ LDDK + +LQRS+TT +FQLES GM+ +K+L+ D FED++A++AL+RPGPL Sbjct: 589 IDIDALSLDDKAVYKLLQRSDTTGIFQLESDGMRGYLKKLKADSFEDIVAMLALYRPGPL 648 Query: 644 QSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLG 703 +GMVD++I+ KHG D ++ H L+ +L+PT G+ LYQEQVM+ AQV++GY+LG Sbjct: 649 GAGMVDDYINVKHGE------DAKYPHPMLEEILKPTNGVFLYQEQVMKSAQVMAGYSLG 702 Query: 704 GADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAA 763 GAD+LRRAMGKK EM KQR VF +GA K I E A +IFDL++KF+GYGFNKSHS A Sbjct: 703 GADLLRRAMGKKIASEMEKQRDVFVKGAAKKKIKKEKANEIFDLIDKFSGYGFNKSHSVA 762 Query: 764 YALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHF 823 YA +SYQT WLKAHYPA FMA+V++ MD+T+K+ + E MGL + P++ Y F Sbjct: 763 YAYISYQTAWLKAHYPAAFMASVLSDKMDDTDKIAFTIGEVQNMGLIVNGPNVCESDYEF 822 Query: 824 HVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLI 883 + DD IVYG+GAIKGVGE ++ ++ R GG +++LF+ CAR + K LN+R +E LI Sbjct: 823 SIKDDKTIVYGLGAIKGVGEALVQTLVAEREAGGEYKDLFEFCARIEKKSLNKRAIEALI 882 Query: 884 MSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQP 943 SGAFD G RA+L+ + A+K A+Q + GQ +F + E E E SY C Sbjct: 883 YSGAFDVFGVDRASLLKTYPKAVKQAEQRQNDQTNGQNTLFNSIQEHAE-YELSYDPCPR 941 Query: 944 WPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAA 1003 + + L E+ +G Y HP ++Y +++R GV L K + L+ Sbjct: 942 FSFKERLKLEKSVMGYYFYDHPTDEYKDDLKRI--GVTLPKDTVLRNNKEVRVLALISEL 999 Query: 1004 RVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFD-DFSGG 1062 R + T+ G+++ ++D S +L ++F AL L + I+++S ++ + F Sbjct: 1000 RYITTRSGDQMASIIIEDGSTKLSAVIFPRALGPLSDKLIANEIVVISAKIKKNKKFGDE 1059 Query: 1063 LKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRA 1122 ++ E+ D + + + I L L N+L L H G PV YQ Sbjct: 1060 YQLIVDEIDSFD----SFFKSVEIKLKVEH--QTLFNQLSDVLHEHH-GQCPVKFLYQYD 1112 Query: 1123 DARARLRFGATWRVSPSDRLLNDLRGLIGSEQVELE 1158 + +L ++ VSP +L +L L+G E+ Sbjct: 1113 NLEGQLLLPQSYFVSPKQQLSEELDDLLGDRVSEIR 1148 >UniRef50_O51526 DNA polymerase III subunit alpha n=25 Tax=Borrelia RepID=DPO3A_BORBU Length = 1147 Score = 1213 bits (3138), Expect = 0.0, Method: Composition-based stats. Identities = 448/1174 (38%), Positives = 688/1174 (58%), Gaps = 45/1174 (3%) Query: 1 MS-EPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59 MS RF+HL VHSDYS++DG AK + ++ KA M +A+TD NL G +KFY Sbjct: 1 MSFRSRFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKK 60 Query: 60 AGIKPIVGADFNVQ--------CDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111 AGIKPI+G + + D LG HL +LA N GY+NL L S +Y G+ Sbjct: 61 AGIKPIIGIEAYMAKTSKFLKKQDDLGKMSYHLILLAKNELGYKNLLKLTSISYLEGF-Y 119 Query: 112 AGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELI 171 P ID+D L + +EGLI S G + R +L + ++++ F + ++LEL Sbjct: 120 YRPRIDKDDLEKYSEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYLELQ 179 Query: 172 RTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRP 231 R G D++ V+ + G+P+ A ND +++ D A +I V I G D R Sbjct: 180 RHGIKDQDIVNERLVKYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSDENRL 239 Query: 232 RNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCN-VTVRLGEYFLPQF--PTGDMST 288 + + + Y++S+EEMCELF D+PEAL NTV IA++C+ + LP + P + Sbjct: 240 KMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVEFNTL 299 Query: 289 EDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFI 348 +YL EGL+ R L + +R EL VI MGF GYFLIV +FI Sbjct: 300 GEYLEHLTLEGLKFRYKNL----------TSKIKDRAFYELSVIIGMGFEGYFLIVWDFI 349 Query: 349 QWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCM 408 +++ DN +PVG GRGSGAGS+VAYAL+ITD+DPL+++LLFERFLNPER+SMPDFD+DFC Sbjct: 350 KFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDIDFCF 409 Query: 409 EKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG 468 E RD++I++V + YG D V+QIITFGT+ KAV++DV RVL P+ + ++K IP P Sbjct: 410 EGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIPDGPK 469 Query: 469 MTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPL 528 ++L + + L E + + K L++ A LEG+ R+A HA G+VI+ T +TD+ PL Sbjct: 470 VSLKEVLDDN-SLKECFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLTDYVPL 528 Query: 529 YCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAA 588 Y D + TQ+ +E GLVK DFLGL+TLT+I A +I + P I Sbjct: 529 YKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIR-----SVNPDFKIKN 583 Query: 589 IPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMV 648 IP +D K+F+ML + +VFQ ES GM+ ++K +PD ED+IAL AL+RPGP+Q + Sbjct: 584 IPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQ--FI 641 Query: 649 DNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADML 708 FI K G + I YP H LK VL PTYG+I+YQEQVM++A+++ G++LG AD+L Sbjct: 642 PQFIAAKKGVKRIKYP-----HPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADIL 696 Query: 709 RRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVS 768 RRAMGKKK +EM + + F GA + G + E+A +IF+L++ F+GYGFNKSH+AAY+L++ Sbjct: 697 RRAMGKKKEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIA 756 Query: 769 YQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDD 828 YQT +LKA+YP FMAA +T +++N +K+ ++E +G+ +L PDIN F V D Sbjct: 757 YQTAYLKANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDS 816 Query: 829 GEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAF 888 G I YG+ IK +G ++ II+ R K G + D R D K +N++ LE I SG F Sbjct: 817 G-ISYGLNGIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLF 875 Query: 889 DRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIE-QSYASCQPWPEQ 947 D L +R L +L ++ + + +GQ +FG L + + +Y + + + Sbjct: 876 DSLDQNRKTLFENLDHLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYS 935 Query: 948 VVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMV 1007 +L E+E LG Y++GHP++ Y K I+ + L D+ ++ ++ +G++ + +V+ Sbjct: 936 ELLGFEKELLGFYVSGHPLDPYKKAIDSFSSLNVLTDLA-AKKDSIVQFSGILNSVKVIQ 994 Query: 1008 TKRGN-RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMT 1066 TKR N ++ ++D G +++++FT++ ++Y+ L + ++ V G+++F+ + Sbjct: 995 TKRNNAKMAFGVIEDFKGAIDIVVFTESYERYRNFLLEGNVIGVVGRLTFN--RDKFSIV 1052 Query: 1067 AREVMDIDEAREKYARGLAISLTDRQIDD-QLLNRLRQSLEPH--RSGTIPVHLYYQRAD 1123 +V++I+ E + I + +++D QLLN L++S+ SG V+ Y + Sbjct: 1053 VEKVVNIERLSEYKINNIHIKFLNNKLNDLQLLNSLKESISNFEDNSGFSNVYFYLRENG 1112 Query: 1124 ARARLRFGATWRVSPSDRLLNDLRGLIGSEQVEL 1157 +L+ + P + L+ LR + E V + Sbjct: 1113 KDLKLKMNSILNFVPDEDKLDKLRKCVIVEDVWV 1146 >UniRef50_Q6FAL5 DNA polymerase III, alpha chain n=16 Tax=Acinetobacter RepID=Q6FAL5_ACIAD Length = 1187 Score = 1212 bits (3136), Expect = 0.0, Method: Composition-based stats. Identities = 558/1169 (47%), Positives = 772/1169 (66%), Gaps = 39/1169 (3%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 +FVHL +H+++S+ + + + L+K A MPALA+TD +NL VKFY + GIKP Sbjct: 2 QFVHLGIHTEFSITESIVRIPDLIKAAVQDDMPALALTDLSNLHAAVKFYTSCLKKGIKP 61 Query: 65 IVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL 124 I+G+ + +T+LA N G++ LT ++S+ + G + P + ++W++E Sbjct: 62 ILGSVVRLNDPEH-----RITLLAMTNDGWKGLTEIVSRGHIEGQQLSIPCVQKEWILEQ 116 Query: 125 NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHA 184 ++ +I+L G + DVG+ L N + + ++E F +R ++ L RT R EE Y+ Sbjct: 117 HQDIIVLLG-QHSDVGKMLCSSNPQKAEPLLQAWQEKFGNRVYIALTRTQRAGEEDYMVE 175 Query: 185 AVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEE 244 AV+LA + VVA NDV FI+ DFDAHE RV I DG+ L D +RPR YS +QY ++ Sbjct: 176 AVKLAAKYNIGVVAHNDVHFIERDDFDAHEARVCIADGYVLADHRRPRIYSSEQYFKTAS 235 Query: 245 EMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKRAKEGLEER 303 EM ELF+DIP A+ NT IA+RCNV+++LG YFLP +P D + + Y +KEGLEER Sbjct: 236 EMEELFSDIPSAIENTYYIAQRCNVSLQLGTYFLPDYPIPDGFTIDTYFEHLSKEGLEER 295 Query: 304 LAFLFP---DEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360 L L+P +++ + R YDER+E E+ +I +MGFPGYFLIVM+FIQW+K NGVPVGP Sbjct: 296 LNHLYPIETRDQDWPEIRKPYDERIEYEVGIILKMGFPGYFLIVMDFIQWAKSNGVPVGP 355 Query: 361 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420 GRGSGAGSLVAY+LKITDLDPL +DLLFERFLNPERVSMPDFDVDFC+ RD+VI++V+ Sbjct: 356 GRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDFCIAGRDRVIDYVSR 415 Query: 421 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP-GMTLAKAFEAEP 479 YGR+AVSQI TFGTMAAK IRDV RVLG YG DRISK++P P G+ L +A E EP Sbjct: 416 TYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTKPLGVDLKQAIEMEP 475 Query: 480 QLPEIY-----EADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEG 534 QL +I +++ + +MA KLEG+TRN GKHAGGVVIAP KITD++ + CD +G Sbjct: 476 QLKDIVTNPSNPDNDDAAEIWEMALKLEGITRNTGKHAGGVVIAPGKITDYSAVLCDADG 535 Query: 535 KHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDK 594 + V Q+DK DVE AGLVKFDFLGLR LT+I A++ INKR E PLDIA +PLDDK Sbjct: 536 TNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAVQNINKR--IQSEIPLDIANVPLDDK 593 Query: 595 KSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDR 654 ++ + + TTAVFQ ES GMK ++K +P FE++IA V+L+RPGP+ + +FI R Sbjct: 594 DAYLVFADANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRPGPMDL--IPDFIHR 651 Query: 655 KHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK 714 HG E ++ H L+ VLEPTYGI++YQEQVMQ AQ +GYTLGGAD+LRRAMGK Sbjct: 652 MHGGE------FEYLHPLLESVLEPTYGIMVYQEQVMQAAQFCAGYTLGGADLLRRAMGK 705 Query: 715 KKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWL 774 KKPEEM KQR +F +GA + I+ A IFD +EKFAGYGFNKSH+AAYALV+Y T WL Sbjct: 706 KKPEEMVKQRQIFIKGAAEKEIDEATANHIFDYMEKFAGYGFNKSHAAAYALVAYHTAWL 765 Query: 775 KAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYG 834 KAHYPAEFMAAV++++M NT+ +V L+D+C L++LPP +N LYHFH +D+ IVYG Sbjct: 766 KAHYPAEFMAAVLSSEMQNTDSIVFLIDDCRNNALEVLPPSVNMSLYHFHASDERTIVYG 825 Query: 835 IGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPH 894 +GAIKGVGE ++++I++R K G + +LFD C R D KK+N+R LE LI +GA D L Sbjct: 826 LGAIKGVGEQAMQSVIDSRIKNGPYTDLFDFCHRIDLKKINKRTLEALIRAGALDCLQIE 885 Query: 895 RAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGER 954 R++LM L +A++AA+Q + G D+FG E E + +PW ++V L GE+ Sbjct: 886 RSSLMAQLPEAVQAAEQARQNRETGIMDLFG---EVEEVQRKPAKPVKPWSDEVRLKGEK 942 Query: 955 ETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRI 1014 +TLGLYLTGHPI+ Y E++ ++ +L ++ PT RG AGLV+ NR+ Sbjct: 943 DTLGLYLTGHPIDVYRPELKSFIPA-KLNEVTPTRRGVTTVFAGLVLDVANFP----NRM 997 Query: 1015 GICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDID 1074 TLDD + R+EV + +++ ++ ++++++ G++ + + ++ Sbjct: 998 V-ITLDDGTARIEVSCNHERFQRFKDIVVVEQVVVIEGEIYEREGFDRPMARLSKAFSLN 1056 Query: 1075 EAREKYARGLAISLTDRQIDDQLLNRLRQSLEPH----RSGTIPVHLYYQRADARARLRF 1130 E R+K A + I + QI L + L+ + P IPV L ++ A A + Sbjct: 1057 EIRQKRANHIRIQPAEEQISKTLAHDLQNIILPFCNVDMCQHIPVMLTLEQPYATAEVHL 1116 Query: 1131 GATWRVSPSDRLLNDLRGLIGSEQVELEF 1159 G W+V+P D LL LR G + + +E+ Sbjct: 1117 GQNWKVAPLDELLIKLRDYFGKDAIYIEY 1145 >UniRef50_D1NB43 DNA polymerase III, alpha subunit n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1NB43_9BACT Length = 1187 Score = 1212 bits (3135), Expect = 0.0, Method: Composition-based stats. Identities = 444/1175 (37%), Positives = 651/1175 (55%), Gaps = 39/1175 (3%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 FVHL +H+ YSM+DG L++ A M A+AITD + G+ +F+ GAGI P Sbjct: 4 DFVHLHLHTHYSMLDGACTVKGLLQLAQEHEMNAMAITDHGYMGGVEEFHQVLSGAGINP 63 Query: 65 IVGADFNVQCDLLGD---------ELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPI 115 I+G + V + D HL +L N GY +L ++S A + G+ P Sbjct: 64 IIGVEAYVAPGDMRDFDSNKPFNRGGFHLILLCENEDGYSSLCKMMSAANKDGFHY-KPR 122 Query: 116 IDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRTG 174 ID++ + + ++GLI S G++ + L+G+ ++ + Y + F D +F+EL+ G Sbjct: 123 IDKELMRQYHKGLICTSACIGGEISQYYLQGDVKRAEQALGEYLDIFGRDNFFIELMDHG 182 Query: 175 RPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNY 234 +E VELA+ L ++ATNDV ++ D +AHEI + I G L + K R Sbjct: 183 MEEERKCNKFLVELAKKNDLRLIATNDVHYMRKEDAEAHEIMLCIQTGARLAE-KHFRFP 241 Query: 235 SPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE--YFLPQFPTGDMSTEDY- 291 +P+ Y +SE EM ELF ++PE++ NT IA+RC++ P+F D D Sbjct: 242 APEFYFKSEAEMKELFRELPESITNTRLIAERCSMKFHYVPEVNHYPKFYMPDGRLADRN 301 Query: 292 -LVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQW 350 L + + +E R F E R+ + ER+E EL VI + GF YF +V +FI+ Sbjct: 302 DLREVCYDNMEYRYGFDPRKTPELDDRQKKILERMEYELGVIEKTGFISYFFVVSDFIRH 361 Query: 351 SKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEK 410 +K +PVGPGRGSGAGSLVAY +ITD+DPL F+L FERFLNPERVS PDFDVDFC + Sbjct: 362 AKGQDIPVGPGRGSGAGSLVAYLTRITDIDPLRFNLFFERFLNPERVSPPDFDVDFCERR 421 Query: 411 RDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMT 470 R +VI++V YG D+V+QI T+G + AKAV++DV RVLG + F +R+SK+IP DP MT Sbjct: 422 RGEVIDYVRGRYGFDSVAQICTYGQLKAKAVVKDVARVLGCDFEFGNRLSKMIPEDPKMT 481 Query: 471 LAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYC 530 L KA E +L E E D + + A+ LEG+ R G HA GV+I ++ + PL Sbjct: 482 LDKAVEQNKELAEKIETDPMIAKVWKFAKVLEGLNRQTGIHAAGVIIGDQRLDNLVPLAR 541 Query: 531 DEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIP 590 V F E GL+K DFLGL+TLTII AL+MI K +D IP Sbjct: 542 SA-SDSMVVPFPAHPCEEQGLLKMDFLGLKTLTIIKDALDMIKKDYGI----VIDTMKIP 596 Query: 591 LDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDN 650 LDD K+F+MLQR +T AVFQLES GM++L + + E +IAL+A++RPGP+Q + + Sbjct: 597 LDDPKTFEMLQRGDTVAVFQLESGGMQNLCRSFGVETLEHIIALLAIYRPGPMQ--FIPD 654 Query: 651 FIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRR 710 FI RK G E+I Y H ++ L+ TYGI+LYQEQ+MQ+ QVL+G+TLGGAD+LRR Sbjct: 655 FIRRKKGEEKIIY-----DHPLMEDCLKETYGIMLYQEQIMQVVQVLAGFTLGGADILRR 709 Query: 711 AMGKKKPEEMAKQRSVFAEGAEK-NGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSY 769 A+GKKK + +AKQ+ F +G ++ N I+ +LA +I++ ++ FAGYGFNKSHSAAY V Y Sbjct: 710 AIGKKKVDVLAKQKEKFFKGCKETNNIDEKLADQIWEKIKLFAGYGFNKSHSAAYGFVCY 769 Query: 770 QTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDG 829 QT +LKA+YP +FMAA++ ++++ E++ +++ C MG+ +LPPD+NS F D+G Sbjct: 770 QTAYLKANYPVQFMAAILNGEIESAERIAFMINTCKEMGINVLPPDVNSSDIRFS-TDNG 828 Query: 830 EIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFD 889 I +G+GAIKGVGE IIE+R K G F D C R +N R+LE L +GA D Sbjct: 829 NIRFGLGAIKGVGEVAASQIIESRQKDGKFETFLDFCERCG-SNVNSRMLEHLTRAGALD 887 Query: 890 RLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQI--EQSYASCQPWPEQ 947 LG R+ ++ + A A+ A GQ +F +L + ++ Sbjct: 888 GLGLRRSQILAIAEPMMAFAAGRARDRAAGQGSLFDLLDGGDADDACSVPIPDIPEFDKE 947 Query: 948 VVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMV 1007 +L E+E LG Y+TGHP++ Y E+ R V ++ + I AG+V + Sbjct: 948 DILKSEKELLGFYVTGHPLDPYA-ELVRTYSTVPIRSLEELNDNAQIRIAGMVNTFTQKL 1006 Query: 1008 TKR-GNRIGICTLDDRSGRLEVMLFTDALDKYQQL---LEKDRILIVSGQVSFDDFSGGL 1063 +K G + GI L+D E M++ AL+ + + L++ VS D Sbjct: 1007 SKNSGKQFGILLLEDLDASCECMIYERALNALTEANVDMSPGTPLLLEATVSKRDEQEKP 1066 Query: 1064 KMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRAD 1123 ++ +V + EA L I L Q+ + L L ++ G + D Sbjct: 1067 RVIVDKVTPLAEAPATLTEKLHIHLYADQVKSETLRELAKACFE-IPGDTLLVTCVVGKD 1125 Query: 1124 ARARLRFGATWRVSPSDRLLNDLRGLIGSEQVELE 1158 ++ + LL + L+G L+ Sbjct: 1126 DSVTFIESRRQEITVTHELLTTIDRLLGPGHYRLK 1160 >UniRef50_B8GWS6 DNA polymerase III subunit alpha n=75 Tax=Alphaproteobacteria RepID=DPO3A_CAUCN Length = 1143 Score = 1209 bits (3129), Expect = 0.0, Method: Composition-based stats. Identities = 462/1163 (39%), Positives = 669/1163 (57%), Gaps = 39/1163 (3%) Query: 1 MSEPR---FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAG 57 MS+ FVHLRV S YS+++G K + K AA MPA + D NL G +++ Sbjct: 1 MSDAEGQGFVHLRVRSAYSLLEGAIKADQIGKLAAEAKMPAAGLADRANLFGALEYSSYA 60 Query: 58 HGAGIKPIVGADFNVQ-----CDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAA 112 AG++PI+G V L +LA N GY NL+ L S AY Sbjct: 61 KDAGVQPIIGCAIPVVGIGGGPTERWARAPTLMLLAQNERGYLNLSELSSIAYLDSAELP 120 Query: 113 GPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172 P++ + E +EGLILLSGG G V G +A +A F DR+++EL R Sbjct: 121 EPVVPWAKVAEHSEGLILLSGGTDGPVDALFAAGKTAEASAALAEMHRVFGDRFYVELQR 180 Query: 173 TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 G P + + V A +P+VATNDV F +DAH+ + I DG + +R R Sbjct: 181 HGLPRQAAAEPGLVNWAYDHDVPLVATNDVYFAKPGFYDAHDALLCISDGAFVGQDERRR 240 Query: 233 NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDY 291 +P+ + + EEM +LFAD+PEA NT++IA+RC V + LP FPTGD + + Sbjct: 241 -VTPEHWFKPAEEMRKLFADLPEACDNTLDIARRCAFMVHKRDPILPSFPTGDGRNEAEE 299 Query: 292 LVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWS 351 L +A+EGL+ RL L EY +RL+ EL +I +MGFPGYFLIV +FI+W Sbjct: 300 LEHQAREGLKMRLEGL-----TLSAPEEEYWKRLDFELGIIKKMGFPGYFLIVSDFIKWG 354 Query: 352 KDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKR 411 K +G+PVGPGRGSGAGSLVA+ L ITDLDPL F LLFERFLNPERVSMPDFDVDFC E+R Sbjct: 355 KAHGIPVGPGRGSGAGSLVAWVLTITDLDPLRFGLLFERFLNPERVSMPDFDVDFCQERR 414 Query: 412 DQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--M 469 ++VI +V + YGRD V+QIITFG++ A+AV+RDVGRV+ P G VDR+ K++P +P + Sbjct: 415 EEVISYVQEKYGRDRVAQIITFGSLQARAVLRDVGRVMQLPLGLVDRLCKMVPNNPAAPV 474 Query: 470 TLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLY 529 TLA+A + EP+L + + D V A +D+A +LEG+ RNA HA G+VI +T PLY Sbjct: 475 TLAQAIDLEPRLKQAKKEDANVSACLDVALQLEGLFRNASTHAAGLVIGDRPLTQLTPLY 534 Query: 530 CDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAI 589 D P TQF+ VE AGLVKFDFLGL+TLT+++ A++ + KR +D+ + Sbjct: 535 KDPRSDLPATQFNMKWVESAGLVKFDFLGLKTLTVLDRAVKHLKKRG-----FEIDLGKL 589 Query: 590 PLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVD 649 P DD K++++L +T VFQLES+GM+D +++++ E++ AL++L+RPGP+ +D Sbjct: 590 PFDDAKTYELLASGQTVGVFQLESQGMRDTLRKMRCGSIEEITALISLYRPGPMD--NID 647 Query: 650 NFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLR 709 F+D K GR+ + H SL+ VL+ TYG+I+YQEQVMQIAQ+L+GY+LG AD+LR Sbjct: 648 TFVDCKFGRKPVD-----TLHPSLEAVLKETYGVIVYQEQVMQIAQILAGYSLGEADLLR 702 Query: 710 RAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSY 769 RAMGKKK EEM Q+ F GA++ + E + IF+LV KFAGYGFNKSH+AAYA +SY Sbjct: 703 RAMGKKKKEEMDLQKIRFVSGAKEKNVPEEQSGSIFELVAKFAGYGFNKSHAAAYAFISY 762 Query: 770 QTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDG 829 QT WLKA+ P EF AA M+ D+ NT+K+ + R G+ + PD+N F V +G Sbjct: 763 QTAWLKANTPVEFFAASMSLDLSNTDKLAVFHQDARRFGITVRAPDVNRSGADFEVE-NG 821 Query: 830 EIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFD 889 E++Y +GAI+ VG ++ ++ R +GG FR++FD R D +++N+R +E L +GAFD Sbjct: 822 EVLYALGAIRNVGLEAMKHLVAVRAEGGPFRDVFDFVERIDPRQVNKRAIENLARAGAFD 881 Query: 890 RLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVV 949 + +RA ++ S + A GQ +FG +P + + W + + Sbjct: 882 SIHKNRAQIVASADVLIAHAQSCHADRQGGQGGLFG---SDPGAGRPRLSKTENWNQVDL 938 Query: 950 LDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVI-TAAGLVVAARVMVT 1008 LD E +G YLTGHP+ + + R + + M E G G+V + + Sbjct: 939 LDEELSAVGFYLTGHPLEDMVGMLRRRRTVMLAEAMAQAEAGAEAFRMCGVVRRRQERAS 998 Query: 1009 KRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAR 1068 + G + +L D +G EV+ ++L K + +LE + + + + D G ++ Sbjct: 999 QSGEKFAFVSLSDPTGEYEVLYPPESLRKCRDVLEPGKAVAIKVRAKARD--GEVRFFGD 1056 Query: 1069 EVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARL 1128 + I++A E GL + L+ + L R + + + G + L Sbjct: 1057 DAEPIEKAVENVVAGLRVHLSPSAAEIDALKRRLEPAQAQKGGEVTFVAAI-GGGREIEL 1115 Query: 1129 RFGATWRVSPSDRLLNDLRGLIG 1151 R + + L L+ G Sbjct: 1116 RLPGRY--TLDAALRGALKTAPG 1136 >UniRef50_A5EV47 DNA polymerase III, alpha subunit n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EV47_DICNV Length = 1175 Score = 1208 bits (3125), Expect = 0.0, Method: Composition-based stats. Identities = 553/1183 (46%), Positives = 758/1183 (64%), Gaps = 40/1183 (3%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 +V L VHS+YS+ D L + +V A + ++A+TD NL +KFY A IKP Sbjct: 3 DYVPLHVHSEYSLNDSLLRIHDIVAFAQTHDLTSIALTDRNNLYAAIKFYQCARRAKIKP 62 Query: 65 IVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL-IE 123 I+G D +++ ++ L +LA N G+++L L+S AY +D+ L E Sbjct: 63 ILGCDLSIRDEVGQIHQ--LILLAQNALGFRHLCELVSFAYTHDQTPNEIAVDKTRLTAE 120 Query: 124 LNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLH 183 +GLI LSGG GDVG+++ RG+ +C +++ F +R++L++ R G+ + + Sbjct: 121 QCQGLIALSGGEEGDVGKAIARGDRKHALQCATHWQKIFSNRFYLQIARFGQTEPPLFSQ 180 Query: 184 AAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSE 243 E+ + + VATN F ++DFD HE RV I G T+D+PKR R ++PQ ++R+ Sbjct: 181 NLAEIGQKLRIAAVATNLACFKTAADFDYHEARVCIASGDTIDNPKRVRRFTPQHHLRAP 240 Query: 244 EEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGD-MSTEDYLVKRAKEGLEE 302 +++ ++FAD P+ L NT IA+RCNV + LG+++LP FP + + E YLV+ A+ GLEE Sbjct: 241 QDLAQIFADAPQLLVNTELIAQRCNVVLSLGKHYLPDFPLPECIDIERYLVQEAERGLEE 300 Query: 303 RLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGR 362 RL LFPD + R ++ Y ERL+TEL VIN+M FPGYFLIV +FIQW+K++ VPVGPGR Sbjct: 301 RLVQLFPDPQIRAEKTALYQERLQTELAVINRMQFPGYFLIVADFIQWAKNHDVPVGPGR 360 Query: 363 GSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMY 422 GSGAGSLVA+ LKIT+LDP+ +DLLFERFLNPERVSMPDFDVDFCM KRD VI +VAD Y Sbjct: 361 GSGAGSLVAFCLKITELDPMAYDLLFERFLNPERVSMPDFDVDFCMNKRDDVIRYVADKY 420 Query: 423 GRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEA----- 477 G D VSQI T GTMAAKAVIRDVGRVL PY VD+ISK++P G+TL A Sbjct: 421 GHDKVSQIATHGTMAAKAVIRDVGRVLSLPYPVVDKISKMVPNTLGVTLPDALGKTEKSR 480 Query: 478 ------EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCD 531 +L + YE DEEVK LID+A LEG+ RN GKHAGGVVIAPT +TDF+ LYC+ Sbjct: 481 THPEFFSAELTKRYEEDEEVKYLIDIALPLEGLARNVGKHAGGVVIAPTTLTDFSALYCE 540 Query: 532 EEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPL 591 G VTQFDK D+E AGLVKFDFLGLRTLT+I+WA++ +N+ LDI I Sbjct: 541 HAGSALVTQFDKEDIEAAGLVKFDFLGLRTLTVIDWAVQNVNQY--APANEKLDIRQIRD 598 Query: 592 DDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNF 651 DD+ +F +L+ +TTAVFQLES GMK+LI +LQPD FED+IALVALFRPGPLQSGMVD+F Sbjct: 599 DDEATFQLLKSGKTTAVFQLESSGMKNLIAKLQPDNFEDLIALVALFRPGPLQSGMVDDF 658 Query: 652 IDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRA 711 I+RKHGR ++ YP H +L +L+ TYG+++YQEQVMQ+AQ+L+ Y+LG AD+LRRA Sbjct: 659 INRKHGRAKVVYP-----HPALAEILKNTYGVMVYQEQVMQVAQILAKYSLGEADLLRRA 713 Query: 712 MGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQT 771 MGKKKPEEMAKQ+ F A G++ ++A+ IFDL+ KFA YGFNKSHSAAYAL+SYQT Sbjct: 714 MGKKKPEEMAKQKGTFVARASAGGVDEQVAIDIFDLMAKFAEYGFNKSHSAAYALLSYQT 773 Query: 772 LWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEI 831 WLKAHYPA FMAAV+T++MD TEK+V L+DEC MGL+ILPP IN Y F +N GEI Sbjct: 774 AWLKAHYPAAFMAAVLTSEMDKTEKIVLLIDECHEMGLRILPPSINHSAYDFTINQQGEI 833 Query: 832 VYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRL 891 ++G+GAIKGVG+ IE I+ R +GG F+ L DLC R D K L R+ LE LI +GAFD + Sbjct: 834 LFGLGAIKGVGQAVIEQILAERRRGGAFQSLTDLCQRLDLKTLKRKTLETLIYAGAFDLI 893 Query: 892 GPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLD 951 +R AL L ALK A+Q+ + + Q +MF +L + + W Q L Sbjct: 894 EKNRGALFAVLPQALKLAEQYHQDKKNRQTNMFSLLDAAHCEAHLALNPENSWQPQQQLM 953 Query: 952 GERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKV--------ITAAGLVVAA 1003 E+ LGL+L+GHP Q E+ R + + ++ K GL+V Sbjct: 954 WEKSVLGLFLSGHP-AQVAAEMIRPICPKNIAEIQHELNQKTPHQGEYHFFYLGGLLVDK 1012 Query: 1004 RVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILI--VSGQVSFDDFSG 1061 R + +K+G T+DD SG++E+ + + L LE+D ++I + + ++ S Sbjct: 1013 RNITSKKGKNFCFITIDDCSGKIEIAVPEELLQTENAALERDTLIIAQIKARFVVNEQSE 1072 Query: 1062 GLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRL---RQSLEPHRSGTIPVH-- 1116 + T + +D+AR + A + I + Q LN L R++ + + + ++ Sbjct: 1073 NWRYTLAHIYTVDDARYQLATDVKIESEINALTPQFLNALASWRRADDDESTAGVTLYFA 1132 Query: 1117 LYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSEQVELEF 1159 L ++ A +R G +R + + DL GS+ + + + Sbjct: 1133 LRLEQEAVAASIRLGGRYRFDRT--IFTDLAHHFGSQNIHMHY 1173 >UniRef50_A6CCN9 DNA polymerase III alpha subunit n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CCN9_9PLAN Length = 1154 Score = 1207 bits (3124), Expect = 0.0, Method: Composition-based stats. Identities = 410/1166 (35%), Positives = 650/1166 (55%), Gaps = 50/1166 (4%) Query: 17 MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVQCDL 76 M+DG ++ +V K GM +LAITD NL G + FY + PI+G + + Sbjct: 1 MLDGASRIPEMVSKVKEAGMNSLAITDHGNLYGAMDFYQHCRSQDVNPILGLEAYIAPRS 60 Query: 77 LGDEL--------THLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEGL 128 ++ HLT+LA N G++NL L S +Y G+ P ID++ L +EGL Sbjct: 61 RFEKGASRMKEASFHLTLLAQNRQGFENLIKLSSASYLEGF-YYKPRIDKEILEAHSEGL 119 Query: 129 ILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVEL 188 ILL+G G++ +L + ++ A+YE+ F DR ++E+ G + L V+L Sbjct: 120 ILLTGCAAGELSHHILGEDWEEAEKLCAWYEKVFGDRVYMEIQNAGLEIQRQCLEGTVDL 179 Query: 189 AEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCE 248 A GLP+VATND ++D D +A ++ + + + D KR + Q ++R+++EM Sbjct: 180 ANRMGLPLVATNDAHYVDQKDAEAQDVLLCVSTRAVVSDEKRMKMTGDQFFVRTQDEMYN 239 Query: 249 LFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKRAKEGLEERLAFL 307 F + +A+A T E+A+R ++ + F P F D + YL K +E L + Sbjct: 240 AFPGLEDAVARTQELAERVDIQ-MSDKKFYPVFQPPDNLTDTQYLRKLCEERLPIKYGD- 297 Query: 308 FPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAG 367 + + +RL+ EL VI QMG+ YFLIV +F+Q++++ G+P RGS G Sbjct: 298 --------ELTQAHWDRLDLELGVIEQMGYSSYFLIVWDFVQFAENEGIP-CTARGSACG 348 Query: 368 SLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAV 427 ++VA+ L ++ + PL++DLLFERFL+P R PD D+DFC ++R VI++ YG +V Sbjct: 349 AIVAFLLGMSQVCPLKYDLLFERFLDPSRTEPPDIDIDFCRDRRQLVIDYTKQKYGEKSV 408 Query: 428 SQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEA 487 +QI TFGT+ AKA IRDVGR LG P V+ I+K+IP G+ L A + P L Y+ Sbjct: 409 AQIGTFGTLKAKAAIRDVGRALGVPLARVNEIAKMIPESLGIKLKDALKESPDLQSAYDQ 468 Query: 488 DEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVE 547 D E+K L+D+A +LEG+ R+AG HA GVV+A +++ PL +TQ+D VE Sbjct: 469 DSEIKRLLDLAMQLEGLCRSAGTHAAGVVVADLPLSEVVPLQSITGKTDIITQWDGPTVE 528 Query: 548 YAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTA 607 GL+K DFLGLR LTI++ A++ + K R + ++ +PLDD+++F++LQR ET Sbjct: 529 SVGLLKMDFLGLRNLTILDKAVQNVKKHRGID----INPHKLPLDDQETFELLQRGETKG 584 Query: 608 VFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQ 667 +FQLES GM+DL+ +++PD FED+IA AL+RPGPL+ GMV ++D K+ R I Sbjct: 585 IFQLESGGMRDLLTKMKPDKFEDIIATSALYRPGPLEGGMVMQYVDVKNNRIPI-----P 639 Query: 668 WQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVF 727 H + +L+ TYG+++YQEQVM+I + G L A +A+ KKK + +A R + Sbjct: 640 KVHPIVDEILDETYGVMVYQEQVMRILNRVGGIELSAAYRCIKAISKKKLKIIADFRDQY 699 Query: 728 AEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVM 787 EGA+K+G++ +LA +F+++EKFAGYGFNKSHS AY V+Y T +LKAHYP EFMAA++ Sbjct: 700 LEGAKKSGVDVKLATDLFEMIEKFAGYGFNKSHSTAYGGVAYATAYLKAHYPKEFMAALL 759 Query: 788 TADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIE 847 + M++ E++ VD+C RM +++LPPDIN F V+ + I +G+GAIKGVGE +E Sbjct: 760 SCGMESHERITEHVDDCRRMKIEVLPPDINRSEVEFSVDGEK-IRFGMGAIKGVGEQVLE 818 Query: 848 AIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALK 907 A+++ R + G F L++LC R D K LN+ LE LI +GA + LG ++A LM ++ A++ Sbjct: 819 AVVKEREENGPFTSLYNLCERVDPKTLNKSTLETLIKAGALNSLGGNQAQLMLTVERAVQ 878 Query: 908 AADQHAKAEAIGQADMFGV---LAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGH 964 +A + A GQ +FG E + E S + WP L E+E G YLT H Sbjct: 879 SALNIHRDRARGQKSLFGDETVDEETGAEEEASLPEAEDWPRAQKLGAEKEVFGFYLTSH 938 Query: 965 PINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKR-----GNRIGICTL 1019 P+ + + +Y ++ + + AG+V + ++ TK+ R L Sbjct: 939 PLAEMGTSLTKYAQNQT-NELAEMDDRVEVILAGMVSSIKMAATKKPSKNGNTRYVNFDL 997 Query: 1020 DDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREK 1079 +D G + +++ + + ++ + ++I+ G++ D + +++ +++AR++ Sbjct: 998 EDPHGLVRCIMWPEQFASMGEKVKMEAMVIIKGKI--DKRGREPNVIVDQLLTLNDARKQ 1055 Query: 1080 YARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARA-------RLRFGA 1132 + LAI+ Q + + L G V L D L Sbjct: 1056 FTDRLAINFKRGVHTRQDMVNVHDVLTQF-PGQTEVILVVDSVDQEKPGTQLRYVLNPPG 1114 Query: 1133 TWRVSPSDRLLNDLRGLIGSEQVELE 1158 + RVS S+ L +IG + Sbjct: 1115 SLRVSCSNEFETQLTAVIGQSHIHFH 1140 >UniRef50_B0MN02 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MN02_9FIRM Length = 1109 Score = 1206 bits (3121), Expect = 0.0, Method: Composition-based stats. Identities = 415/1145 (36%), Positives = 624/1145 (54%), Gaps = 56/1145 (4%) Query: 34 LGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVQCDLLGDE-------LTHLTV 86 +G A+A+TD + G + FY GIK I+G + V D+ HL + Sbjct: 1 MGQTAVALTDHGVMYGSIDFYNECVENGIKAIIGCEVYVAPRTRFDKSTKSDMKPHHLVL 60 Query: 87 LAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRG 146 L +N GY+NL+ L++ Y G+ P +DR+ L ++GLI LS G++ R+LL G Sbjct: 61 LCKDNEGYKNLSKLVTLGYTEGF-YNKPRVDRELLRRYSKGLICLSACISGELARTLLDG 119 Query: 147 NSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFID 206 A V Y E F + Y++EL G ++E L + +A+ G +VATND +++ Sbjct: 120 RLADAVTLVKEYREIFGEDYYIELQSHGISEQERILPYLLRVAKDTGTQLVATNDAHYVE 179 Query: 207 SSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPE-ALANTVEIAK 265 D + I TLDD + + + Y++SE+EM L P+ A NTV+IA+ Sbjct: 180 KEDSYVQRVLTCIATNTTLDDKNSMQFATDEFYLKSEDEMKAL--GFPQSAYDNTVKIAE 237 Query: 266 RCNVTVRLGEYFLPQFPTGDMSTED-YLVKRAKEGLEERLAFLFPDEEERLKRRPEYDER 324 +CNV+ G LP F + Y + ++GL +R P E +R Sbjct: 238 KCNVSFTFGHTILPFFKAEGYDNNEIYFNAQVRKGLVKRYGDPVP---------KEVLDR 288 Query: 325 LETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEF 384 E E+ VI +MGF YFLIV +FI ++K NG+ VGPGRGSGAGS+ AY L ITD+DP+ F Sbjct: 289 AEYEMSVIKKMGFIDYFLIVADFIGYAKRNGIAVGPGRGSGAGSVCAYCLGITDIDPIRF 348 Query: 385 DLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRD 444 +LLFERFLNPERV+MPDFDVDFC +R +VI++V YGRD V+QIITFGTMAA+ IRD Sbjct: 349 NLLFERFLNPERVTMPDFDVDFCYIRRQEVIDYVVRKYGRDHVAQIITFGTMAARGAIRD 408 Query: 445 VGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGV 504 GR +G PYG VD ++KLIP T+ A ++E +L ++ +D EV LI+ A+K+EG+ Sbjct: 409 AGRAMGLPYGKVDTVAKLIPMSMHSTIDGALKSEKELVKLASSDSEVSLLIETAKKIEGM 468 Query: 505 TRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTI 564 RN HA G+VI + D+ PLY + EG+ +TQ+ + +E GL+K DFLGLR LT+ Sbjct: 469 ARNTSIHAAGIVITRDPVADYVPLYQNSEGE-VMTQYTMTAIERLGLLKMDFLGLRYLTV 527 Query: 565 INWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQ 624 I +++ K P DI IP +D +++DM+ T VFQ ES GM L+ R++ Sbjct: 528 IQDCCKLVVKSC-----PDFDIEKIPENDAETYDMMSSGGTLGVFQFESAGMTSLLSRMK 582 Query: 625 PDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGII 684 P ED+ A ++L+RPGP+ S + ++ + E+I Y +H LK +L+ TYG I Sbjct: 583 PRSVEDLTAALSLYRPGPMDS--IPTYLANRRNPEKIRY-----KHPLLKGILDVTYGCI 635 Query: 685 LYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKI 744 +YQEQVM I +VL+GY+ G AD++RRAM KKKPE M K+R+ F EGA N ++ ++A +I Sbjct: 636 VYQEQVMMICRVLAGYSYGRADIVRRAMAKKKPEVMVKERATFVEGAVANNVDRQVAEEI 695 Query: 745 FDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDEC 804 FD + FA Y FNKSH+AAY+L++Y+T +L+ HY E+M A++T+ + K + + Sbjct: 696 FDDMMSFASYAFNKSHAAAYSLLAYRTAYLRCHYYKEYMVALLTSVIGWGGKTAEYIGDL 755 Query: 805 WRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFD 864 + GLK+LPP +N F +DG I +G+ AIK VG I IIE R K F+ LFD Sbjct: 756 AQHGLKLLPPHVNYSETGFSCENDG-IRFGLLAIKNVGANMIADIIEERTKH-PFKSLFD 813 Query: 865 LCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF 924 C R K +N+R LE LI GAFD LG +R +M SL L Q E GQ + Sbjct: 814 FCERMSDKNINKRALESLIKCGAFDGLGNNRREMMISLELMLDTLSQRHDLE--GQMSLM 871 Query: 925 GVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKD 984 G + ++ + +L E+E LG+Y++GHP + + + Sbjct: 872 GE-DDAADEGAFQIKPADEYSHAQLLSYEKEMLGIYISGHPADPFYRIARESGYENIGSI 930 Query: 985 MHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEK 1044 + + + + L+ + R +TK G +G ++D SG +E ++F ++Y +L Sbjct: 931 LESNKDKQNVRVTALLTSVRNHITKSGKTMGFIVIEDASGEIECLVFPKLYEQYSSMLRT 990 Query: 1045 DRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARG-----------LAISLTDRQI 1093 + G VS +D K+ + D A+ + L I + R Sbjct: 991 GNVYAFEGTVSAEDEGD-PKLLINAITQPDLAKLRKMHESRNTGQNKAAVLYIRFSSR-- 1047 Query: 1094 DDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSE 1153 DD + ++ L+ ++ G + ++ D R + V + + L G+ G Sbjct: 1048 DDADIPAVKALLKVNK-GNTLTKICFE--DTRETITLPPALSVDLNSDFIQKLNGICGKN 1104 Query: 1154 QVELE 1158 + ++ Sbjct: 1105 NIIIK 1109 >UniRef50_C5EYF1 DNA polymerase III alpha subunit n=3 Tax=Helicobacter RepID=C5EYF1_9HELI Length = 1172 Score = 1206 bits (3121), Expect = 0.0, Method: Composition-based stats. Identities = 441/1180 (37%), Positives = 677/1180 (57%), Gaps = 61/1180 (5%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 F HL +H++YS++DGL K L K+ LGM ++AITD N+ G ++FY A GIKP Sbjct: 15 PFTHLHLHTEYSLLDGLNKIKILAKRIKELGMDSVAITDHGNMFGAIEFYKAMKEQGIKP 74 Query: 65 IVGADFNVQC----DLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 I+G + + ++ HL + A N GY+NL L S+A GY P I + Sbjct: 75 ILGMEAYLHNAEEISDKSNQRFHLCLYAKNLQGYKNLMYLSSQACLYGY-YMKPRISKKM 133 Query: 121 LIELNEGLILLSGGRMGDVGRSLL--------RGNSALVDECVAFYEEHFPDRYFLELIR 172 L E +EGLI S G+V L R E Y+E F D ++LEL+R Sbjct: 134 LREHSEGLICSSACLNGEVQWHLNLKKEDNKGRKGYERAKEVALEYKEIFGDDFYLELMR 193 Query: 173 TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 G +++ ++++ G+ ++ATND + + D A E+ I G +DP R R Sbjct: 194 HGIEEQQLIDKQIIQISLETGIKIIATNDTHYTNQGDSTAQEVAFCIGFGKDFNDPNRMR 253 Query: 233 NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFP---------- 282 + + Y++S E+M +L+ D+PEA+ANT EIA +CN+ + LG+ P F Sbjct: 254 HTVQEFYIKSPEQMAKLYMDLPEAIANTKEIADKCNLELHLGDPTPPSFKFTAEYAKAEN 313 Query: 283 TGDMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFL 342 +Y + +EGL++RL + R EY ERLE E+++IN+M FPGY L Sbjct: 314 LDFTQDSEYFAYKCREGLKKRLENV------ESSRHQEYKERLEKEIEIINKMKFPGYML 367 Query: 343 IVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDF 402 IV +F++ +K+ G+PVGPGRGS AGSLVA+ L+IT++DP+++DLLFERFLNPERVSMPD Sbjct: 368 IVWDFVRAAKERGIPVGPGRGSAAGSLVAFCLEITNIDPMKYDLLFERFLNPERVSMPDI 427 Query: 403 DVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL 462 D+DFC +R++++E+V D YGR V+Q+ITFG M AKAVIRDV RV+G PYG D +KL Sbjct: 428 DMDFCQSRREEILEYVTDKYGRHNVAQVITFGMMKAKAVIRDVARVMGMPYGEADAFAKL 487 Query: 463 IPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVI-APTK 521 IP + +TL KAFE EP++ E+ + D K + D A LE RN G HA VVI + + Sbjct: 488 IPKELDITLEKAFEKEPKIKELIDKDPLAKKIWDFAVVLENTKRNPGTHAAAVVIDSEHE 547 Query: 522 ITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGE 581 + APLY TQ+ +E L+KFDFLGL+TLT+++ AL++I R Sbjct: 548 LWHKAPLYRSTRDGIIATQYSMKYLEDVDLIKFDFLGLKTLTLVDDALKLIKNRH----N 603 Query: 582 PPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPG 641 +D + ++DKK ++ LQ T +FQ+ES + + KRL+P FED+IA++AL RPG Sbjct: 604 LEIDFLKLDVNDKKVYETLQSGNTLGIFQIESSMFQGINKRLRPSTFEDIIAIIALGRPG 663 Query: 642 PLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYT 701 P++SGMV +FIDRKHG+ I Y L+ +L PTYG I+YQEQVMQI Q + G++ Sbjct: 664 PMESGMVSDFIDRKHGKAPIVY-----MFPELESILRPTYGTIVYQEQVMQIVQKIGGFS 718 Query: 702 LGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHS 761 LG AD++RRAMGKK + MA ++ FA+GAEK G N A ++++L+ KFAGYGFNKSHS Sbjct: 719 LGEADLIRRAMGKKDAQIMADNKNKFAQGAEKQGFNRAKAEELWELIVKFAGYGFNKSHS 778 Query: 762 AAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLY 821 AAYA+++++T +LK +YP EFMAA++T++ ++T+K+V ++E +M +K+LPP+I Sbjct: 779 AAYAMITFETAYLKTYYPKEFMAALLTSEKNSTDKIVEYIEEANKMDIKVLPPNIQKSEL 838 Query: 822 HFHV---NDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRV 878 F V +D+ I++G+GAIKG GE I I+E R G F++L D +R D +K+N++ Sbjct: 839 EFSVARIDDEDCILFGLGAIKGAGEVAINIILEERKNNGDFKDLEDFLSRIDPQKVNKKS 898 Query: 879 LEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSY 938 LE I SGA D G R L+ + + A A+ + +FG +EE I Sbjct: 899 LEAFIKSGAMDCFGYTRRTLLEQVELLTENAKTAQIAKKEAENSLFGD-SEEFTAIALEL 957 Query: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998 + + + ++ +L+ E+E+LG Y +GHP+ Y EI + + + I G Sbjct: 958 ENKEEYSKKEILEFEKESLGFYASGHPLEDYK-EIIKSINCAYTNQIQDIAENSSILLVG 1016 Query: 999 LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDD 1058 + +K G R GI L D G +E+ +F L + + DR + ++ + + Sbjct: 1017 SIEDVITKFSKSGKRYGILKLQDFYGSVELTIFEKTLLALEGM---DREIPIAVKCFVQE 1073 Query: 1059 FSGGLKMTAREVMDIDEAREKY---------ARGLAISLTDRQIDDQLLNRLRQSLEPHR 1109 + + A +++ ++EA+++ + L +++++++ +R++ H Sbjct: 1074 QNDTKSLRAEKILTLEEAQKEKVEFTMQKADTSEPLVLLLSVGLNERVISSIREAAMRHH 1133 Query: 1110 SGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGL 1149 L L +++ V ++ +L+ L Sbjct: 1134 GKR---ELRILFKTQTQELEMVSSFFV--HSQIKEELKEL 1168 >UniRef50_Q6MLD4 DnaE protein n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MLD4_BDEBA Length = 1179 Score = 1205 bits (3119), Expect = 0.0, Method: Composition-based stats. Identities = 467/1197 (39%), Positives = 692/1197 (57%), Gaps = 71/1197 (5%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS FVHL VHS+YS+++ + + KKAAA+ MPA+A+TD N+ G V+F+ A Sbjct: 1 MS---FVHLHVHSEYSLLEAACRVKAIAKKAAAMQMPAVALTDNGNMFGAVEFFFACKDN 57 Query: 61 GIKPIVGADFNVQCDLLGDE----------LTHLTVLAANNTGYQNLTLLISKAYQRGYG 110 +KPI+G D + ++ L LA NN GY+NL L S YQ G+ Sbjct: 58 NVKPILGLDAYIAPGSRLEKKQDRDQVNTGPRRLVFLAQNNDGYRNLCKLSSIGYQEGF- 116 Query: 111 AAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170 P ID + + + NE LI L+GG G+V S LR + +E F DR +LE+ Sbjct: 117 YWKPRIDYEVIQQYNENLICLTGGLRGEVAESFLREGPDAALAKIRQLKEIFNDRLYLEM 176 Query: 171 IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230 RTG + + +E ++ G+PVVA+NDV ++ D A E+ + I TL D R Sbjct: 177 CRTGVAEWDRLNPFLLEASKITGVPVVASNDVHYMTQDDQMAQEVLICIGSNKTLSDESR 236 Query: 231 PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE------YFLPQFPTG 284 R + + Y++ E+M ELFAD+PEA+ANT++IA+RC+V +L + Y LP FPT Sbjct: 237 FRLGTDEFYLKKPEQMTELFADVPEAIANTLQIAERCDVKFKLKDDQGKPIYHLPTFPTD 296 Query: 285 DM-STEDYLVKRAKEGLEERLAFLFPDEE-ERLKRRPEYDERLETELQVINQMGFPGYFL 342 D S ++ + ++AK GL R E + PEYD+RLE EL +I++MGF GYFL Sbjct: 297 DGLSLKEDIARKAKAGLLVRFEEAAARGEMIPEDKIPEYDKRLEYELGIIDRMGFNGYFL 356 Query: 343 IVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDF 402 IV +FI W+K N +PVGPGRGSGAGSLVAY L+ITDLDPL LLFERFLNPER+SMPDF Sbjct: 357 IVQDFINWAKVNDIPVGPGRGSGAGSLVAYVLRITDLDPLPNFLLFERFLNPERISMPDF 416 Query: 403 DVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL 462 D+DFC ++R +VI++V YG+++VSQIIT+G + A+A I+DVGRVLG + VD ++KL Sbjct: 417 DIDFCQDRRQEVIQYVTRKYGQESVSQIITYGKLQARAAIKDVGRVLGMTFPEVDAVTKL 476 Query: 463 IPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 IP G+ L +A E EP++ E+ E + V L+D+A+++EG+ R+AG HA GV+IA ++ Sbjct: 477 IPEKLGINLKEAMEMEPRIGEMMEMNPTVNTLMDLAQRVEGMVRHAGIHAAGVIIADGQL 536 Query: 523 TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP 582 APLY +G+ V Q+D E GL+KFDFLGL+TLT IN AL++I K R K Sbjct: 537 VRHAPLYKGADGE-QVVQYDMKHAEKIGLIKFDFLGLKTLTHINHALKLILKNRGK---- 591 Query: 583 PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 + IP+ D +F+M+ R +T VFQ E G+ D ++++P F D+ A+ +L+RPGP Sbjct: 592 KIQSQMIPMTDAATFEMMSRGDTAGVFQFEGEGITDATRKIRPSSFADVTAITSLYRPGP 651 Query: 643 LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 + + +F DRKHG+ + Y E + VL TYGI++YQEQVM IA ++GY+L Sbjct: 652 MA--NIPDFTDRKHGKAPVEYLL-----EDTREVLSETYGIMVYQEQVMGIASRIAGYSL 704 Query: 703 GGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSA 762 G ADMLRRAMGKK EEM + R F +GA + G + + + +FDL+ KFA YGFNKSH+A Sbjct: 705 GEADMLRRAMGKKIKEEMDQHRERFMKGAIERGHDKQRSSDLFDLMYKFADYGFNKSHAA 764 Query: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 AY++V+ QT WLK HYPAEF AA+++ ++ +TEK+V + + GL + P +N Y Sbjct: 765 AYSVVTIQTAWLKCHYPAEFFAALLSTELSDTEKIVKYSKDATKRGLTVRSPSVNFSDYL 824 Query: 823 FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNK--GGYFRELFDLCARTDTKKLNRRVLE 880 F V+ D EI +G+GAIKGVG+ +EAIIEARN F L + DT+++N++V+E Sbjct: 825 FDVHGD-EIYFGLGAIKGVGQNAVEAIIEARNNLPEKKFNSLDEFFNSIDTRRVNKKVIE 883 Query: 881 KLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYAS 940 LI +GAFD G HRA L+ L A K +GQ+ +F + + + + Sbjct: 884 CLIKAGAFDGFGAHRAQLVAGYQKYLDRAIGLQKDREMGQSSLFDLGPS--TETKVTLEE 941 Query: 941 CQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTER---------- 990 +PW L E+E LG YL+ HP+ + + ++ D+ Sbjct: 942 VKPWARTASLTYEKEVLGFYLSDHPLKGF-DTLSELWTTCKVIDLPAQMPAPGSPEAEAL 1000 Query: 991 -------------GKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDK 1037 K + AGL+ R ++TK+G R+ ++D +G E+++F D+ + Sbjct: 1001 KAAKKDWKNRDAGKKRVVVAGLITELRELITKKGTRMAFGKVEDLTGSCELVIFPDSYAR 1060 Query: 1038 YQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQL 1097 ++ L +R ++V G + ++ G K+ V +++ K + + + L +I+ Sbjct: 1061 FEAQLRDERPVLVGGGLEVEE--GSAKIMVDTVSPLEDIL-KKTKRMVLRLD--KINPDD 1115 Query: 1098 LNRLRQSLEPHRSGTIPVHLYYQRA--DARARLRFGATWRVSPSDRLLNDLRGLIGS 1152 RL+ L G V L + + R + ++ ++ + L G Sbjct: 1116 YPRLQS-LMKDYPGATSVSLEIELGELNRRVLMEMEEAQGINVNNEFFEGVHSLFGR 1171 >UniRef50_A1AX67 DNA polymerase III, alpha subunit n=2 Tax=sulfur-oxidizing symbionts RepID=A1AX67_RUTMC Length = 1144 Score = 1204 bits (3116), Expect = 0.0, Method: Composition-based stats. Identities = 505/1157 (43%), Positives = 743/1157 (64%), Gaps = 32/1157 (2%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M+ FVHL S++S+ + L + L++K +GM ++A+TD +NL VKFY A Sbjct: 1 MTNSNFVHLHCQSEFSVENSLIRIPKLIEKVQEIGMNSIALTDESNLFTAVKFYQKATIA 60 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 IKPI GA N++ E + +L + GY NL+ LIS +Y +G + + Sbjct: 61 NIKPIFGARINIKDKE--GEFYSVLLLCQDYQGYLNLSELISLSYTQGRSFECVSVTQQQ 118 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 180 LI+ N+GLI+++ DV + L+ + F++ +RY+L + RT R +E Sbjct: 119 LIDHNQGLIMIATPIYSDVAKYLISNQMIEAKQKAEFWQTILVERYYLSVQRTSREFDEE 178 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 +LH V+LA + VVATNDV+F++ SDFDAHE R+ I G LDD +R +++S QQ++ Sbjct: 179 HLHLCVKLALELDIAVVATNDVQFLNESDFDAHEARICISQGGLLDDVRREKHFSNQQFL 238 Query: 241 RSEEEMCELFADIPEALANTVEIAKRCNVTVR-LGEYFLPQFPTG-DMSTEDYLVKRAKE 298 +S E+M ELF+D+PE L NT+EIAKRCNV + + +LP FP D++ E + + ++ Sbjct: 239 KSSEQMHELFSDLPEILENTLEIAKRCNVHFKLFKKNYLPDFPVPKDLTIERFFCEESEH 298 Query: 299 GLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPV 358 GL +RL L D Y +RL+ EL VI QMGFPGYFLIV +FI+WSK+N +PV Sbjct: 299 GLVQRLQNLKVD-------TLVYYQRLKFELNVIIQMGFPGYFLIVADFIRWSKENDIPV 351 Query: 359 GPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHV 418 GPGRGSGAGSLVAY L IT++DP+ +LLFERFLNPERVSMPDFD+DFC ++RD+VI++V Sbjct: 352 GPGRGSGAGSLVAYVLGITNVDPIRHELLFERFLNPERVSMPDFDIDFCTDRRDEVIDYV 411 Query: 419 ADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEA- 477 A YG VSQIIT+GTMAAK V+RDVGR+LGHPYGF D+ISK+IP D MTL KA Sbjct: 412 AKKYGYKKVSQIITYGTMAAKGVVRDVGRILGHPYGFSDKISKMIPNDLKMTLEKALSKP 471 Query: 478 ----EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCD-E 532 +L Y+++E V ALID++++LEG+ RN G HAGGVVIAP+KI+DF P+Y Sbjct: 472 EEGGSEELRARYDSEESVTALIDLSKQLEGLVRNVGTHAGGVVIAPSKISDFCPVYKGYG 531 Query: 533 EGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLD 592 E V+QFDK D+E GLVKFDFLGL LT+I+ +++I+ + N P+D+ A+PLD Sbjct: 532 ENDGVVSQFDKDDIEAIGLVKFDFLGLSNLTVIHKTVKLISAKGLSN--EPIDLDALPLD 589 Query: 593 DKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFI 652 DKK +++LQR +TT +FQLES GM+ +K+LQ D FED++A++AL+RPGPL +GMVD++I Sbjct: 590 DKKVYELLQRCDTTGIFQLESEGMRSYLKKLQADNFEDIVAMLALYRPGPLDAGMVDDYI 649 Query: 653 DRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAM 712 + KHG ++ YP H L+ +L+PT G+ LYQEQVM+ AQV++GY+LGGAD+LRRAM Sbjct: 650 NVKHG-AQVKYP-----HPMLEQILKPTNGVFLYQEQVMKSAQVMAGYSLGGADLLRRAM 703 Query: 713 GKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTL 772 GKKK EM++QRSVF +GA + GI+ + A +IFDL++KF+GYGFNKSHS AYA VSY T Sbjct: 704 GKKKDSEMSRQRSVFVKGAAEKGIDEKKANEIFDLIDKFSGYGFNKSHSVAYAYVSYHTA 763 Query: 773 WLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIV 832 WLK+H+PA FMAAV++ MDNT+++ + E +MGL + P++ Y F +ND+ + Sbjct: 764 WLKSHHPAPFMAAVLSGMMDNTDRISFTISEVRKMGLVVNGPNVCESNYEFSINDEKTVA 823 Query: 833 YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892 YG+GAIKGVG ++A++ RN G ++ LF+ C+R + + LN+R +E LI SGAFD LG Sbjct: 824 YGLGAIKGVGGALVDALVFERNTNGVYKSLFEFCSRIEKRYLNKRAIEALIYSGAFDVLG 883 Query: 893 PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952 RA+L+ + A++ A+Q GQ +F + E+ + E +Y S + + L Sbjct: 884 VDRASLIKTYPIAIRQAEQKQNDYFSGQKGLFSNI-EQHNEYEMNYLSASSFSFKERLQL 942 Query: 953 ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012 E+ LG Y HP ++Y +++ + K + K + L+ R TK G Sbjct: 943 EKSVLGYYFNDHPTDEYKTDLKHIGAILPSKIV--FRNNKDMRILALISELRYRATKSGG 1000 Query: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072 +I + T++D + L ++FT L L D ++++SG+++ + F ++ ++ + Sbjct: 1001 QIALITVEDGAKLLNAVIFTKTLGLVSDQLIVDEVVVISGKINKN-FRDQWQVVVDKIEN 1059 Query: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGA 1132 I E + YARG + L + + ++ + L ++ G PV + Y + R + Sbjct: 1060 IGEVKMSYARGFEVLLNAKH--QSIFDKFVKVLLDYK-GNCPVKISYMTDNLRGSMLLNK 1116 Query: 1133 TWRVSPSDRLLNDLRGL 1149 + V+P+ +L++ + L Sbjct: 1117 AYLVAPNQQLIDAVNAL 1133 >UniRef50_UPI0001C3188F DNA polymerase III, alpha subunit n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C3188F Length = 1178 Score = 1202 bits (3110), Expect = 0.0, Method: Composition-based stats. Identities = 421/1186 (35%), Positives = 646/1186 (54%), Gaps = 65/1186 (5%) Query: 7 VHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIV 66 HL VHS+YS++DG K L +AAA PAL +TD + G V+ Y A IKP++ Sbjct: 10 AHLHVHSEYSLLDGACKIDALAARAAAFDQPALGLTDHGVMNGSVEMYKACKKHDIKPLL 69 Query: 67 GADFNVQCDLLGD----ELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLI 122 G + V D E HLT+LA N+ GY+NL L S Y G P +D + + Sbjct: 70 GCEVYVVDDRHFRAGRAERNHLTLLAQNDVGYRNLVKLSSTGYLEGLHRGKPGVDFEIMS 129 Query: 123 ELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRTGRPDEESY 181 + +EG+I L+G + L+ V F ++ + E+ + G D++ Sbjct: 130 QHSEGIIALTGCLASRFCQRLVNDRPDEARAHVDDLMNIFGREQVYFEVQKNGIADQDKA 189 Query: 182 LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241 V +A G P+V T DV ++ D+ H + + TL +PK + + Y++ Sbjct: 190 NEGIVRIAREVGRPLVGTGDVHYLRREDYHHHTALLCVQTKSTLAEPK-MTFDTNEFYLK 248 Query: 242 SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTED-YLVKRAKEGL 300 S +EM + FA+ P+AL T+E+A+RC V + LG +P +PT + E YL + +GL Sbjct: 249 SNQEMADAFAEWPDALPTTLEVAERCQVEIPLGGQLIPSYPTPNGEEERAYLRQLVLDGL 308 Query: 301 EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360 R P ER+E EL VI++MGF YFLIV +F+++SK+NGV VGP Sbjct: 309 HLRYGNPPP---------AAAVERMEMELAVIDKMGFNAYFLIVWDFVRYSKENGVAVGP 359 Query: 361 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420 GRGS AGS+VAY L ITD+DPL +DLLFERFLNPERVSMPD D+DF + R++VI +V + Sbjct: 360 GRGSAAGSIVAYCLAITDVDPLAYDLLFERFLNPERVSMPDIDIDFSVRGRERVIRYVTE 419 Query: 421 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP---DPGMTLAKAFEA 477 YGR++V+QIITFG M +A RD RVLGH YG D+++KLIP + + Sbjct: 420 KYGRESVAQIITFGKMFPRAATRDAARVLGHDYGAGDKLAKLIPDPIMGRPPSFDDCLQP 479 Query: 478 EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGK-- 535 L +++ + ++D+AR LEG+ RN+ HA VVIA +TD PL + G Sbjct: 480 GEPLRGEVDSNPVSRQIVDVARGLEGIVRNSSIHAAAVVIADRPLTDIVPLQLADAGTDD 539 Query: 536 ------HPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAI 589 VTQ+ VE GL+K DFLGLR L +I AL++I + D+ + Sbjct: 540 RGDKVYRTVTQYSMKPVEELGLLKMDFLGLRNLDVIEDALDIIERSTGTRP----DMTTL 595 Query: 590 PLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVD 649 PLDD K++DM+ R ++ VFQ ES GM++ +K+++P ED+IAL AL+RPG + + Sbjct: 596 PLDDGKTYDMIARGDSVGVFQFESEGMRETLKKVRPTELEDLIALNALYRPGAMDQ--IP 653 Query: 650 NFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLR 709 + K E ISYPD E L+P+LE T G+I+YQEQ MQIA+ L+G++ AD LR Sbjct: 654 TYARGKRNPESISYPD-----ERLRPILESTNGVIVYQEQAMQIAKSLAGFSGAKADDLR 708 Query: 710 RAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSY 769 +A+GKK MA+ + F EG + + ++ ++ EK A Y FNK+H+A YAL++Y Sbjct: 709 KAIGKKNRAAMAELKPEFIEGCRASRTSEQVIEWLWATNEKSADYSFNKAHAACYALIAY 768 Query: 770 QTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDG 829 +T WLKA++PAE+MAA++++ MD +KV V + +MG++ILPPD+N + F V DG Sbjct: 769 RTAWLKANHPAEYMAALISSVMDTKDKVPFFVAQTEQMGIEILPPDVNESDHDFMVV-DG 827 Query: 830 EIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFD 889 I +G+ A+KGVG +E I AR + G F L+D C R D K +N++ +E LI GAF Sbjct: 828 NIRFGLDAVKGVGYAAVEGIKRAREEDGPFTSLWDFCERVDGKAVNKKAIEALIKCGAFS 887 Query: 890 RLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEP----------EQIEQSYA 939 G R ++ L A A + + IGQ +F + E Sbjct: 888 STGASRKGMLGVLEQAQAAGQKAQQDALIGQGSIFDLGPEPGAANGAAASAFAAPSHPGI 947 Query: 940 SCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGL 999 + + + +L E+E++GL+++ HP+ + + V L ++ + G +T G+ Sbjct: 948 PAEEFDQAEMLAAEKESIGLFISAHPLKAVREAMRVKVDC-TLAELSDRKDGDWVTVGGI 1006 Query: 1000 VVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDF 1059 + + + TKRG+ + TLDD G +E+++F L ++ + D ++ + G+V D Sbjct: 1007 ITQCKRLRTKRGDHMMFATLDDLEGTVEILIFGRVLAASEEAFQMDSVITLRGRVDHKDA 1066 Query: 1060 SGGLKMTAREVM-------DIDEAREKYAR------GLAISLTDRQIDDQLLNRLRQSLE 1106 S + ++ +I++ARE+ A+ + + L + +++ L+ E Sbjct: 1067 S-KTTVVVQDAELFAPSEAEIEKAREEAAKIPTGPPPVRLRLDCTALRAGVIDDLKAVFE 1125 Query: 1107 PHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGS 1152 G V L + + LR G T++VS + L +L ++GS Sbjct: 1126 TF-PGESVVVLEMHTSGGQRTLRLGPTYKVSRNAALQAELDHVLGS 1170 >UniRef50_C7M0P6 DNA polymerase III, alpha subunit n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M0P6_ACIFD Length = 1189 Score = 1199 bits (3103), Expect = 0.0, Method: Composition-based stats. Identities = 428/1213 (35%), Positives = 640/1213 (52%), Gaps = 89/1213 (7%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL H++YSM+DG ++ L++ AAA G PALAITD NL G ++FY A G++PI Sbjct: 4 FVHLHTHTEYSMLDGASRINDLLRAAAADGQPALAITDHGNLYGALEFYKAATRTGVRPI 63 Query: 66 VGADFNVQCDLLGDEL--------------------THLTVLAANNTGYQNLTLLISKAY 105 +G + + + HLT+LA N TGY NL L S+A+ Sbjct: 64 IGLEAYMAGGSRFERPQRRGRLDDTGGESERGEKLYYHLTLLAENETGYHNLIQLSSRAF 123 Query: 106 QRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PD 164 GY P ID + L E EGLI L+G G V + LLRG+ E PD Sbjct: 124 LEGY-YYKPRIDFELLEEHREGLIALTGCLGGLVLQHLLRGDEEGARTVAGTLREILGPD 182 Query: 165 RYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFT 224 F+EL G ++ +ELA+ GL VATND + D + H+ + + G T Sbjct: 183 NVFVELQDHGLAEQRRTNPQLLELAKHLGLRTVATNDSHYTHREDHETHDALLCVQTGAT 242 Query: 225 LDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTG 284 ++D R R + Y++S EEM E F ++PEA T++IA+RC++ + G+ LP+ Sbjct: 243 INDQNRFRFEGSEHYLKSAEEMRERFREVPEACDATLDIAERCSLELTFGQPALPEIDIP 302 Query: 285 --------DMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMG 336 D +YL + +G R + ER+ EL VI MG Sbjct: 303 VRITGATYDERAGEYLAELVWQGARARYGNDLDETTS---------ERIRYELSVIESMG 353 Query: 337 FPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPER 396 FPGYFL+V + I+ +++ + VGPGRGS AGS+VAY L IT +DPL +DL+FERFLNP R Sbjct: 354 FPGYFLVVWDLIRHAREAHIRVGPGRGSAAGSVVAYCLGITQIDPLAYDLIFERFLNPGR 413 Query: 397 VSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFV 456 MPD D+DF R ++I + A+ YG D V+QI+TF T+ A+A +RD RVLG+PY Sbjct: 414 KQMPDIDMDFDERYRGEMIRYAAERYGHDHVAQIVTFSTIKARAAVRDAARVLGYPYAVG 473 Query: 457 DRISKLIPP-------------DPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEG 503 D+I+K +PP + + L E+ E+D +V ++ +A+ LEG Sbjct: 474 DKIAKAMPPLVMGRDTPLAACLELTPGHEDGYAQAAALREMVESDPDVARVVQVAKGLEG 533 Query: 504 VTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKH------PVTQFDKSDVEYAGLVKFDFL 557 + R G HA VVI+ +T++ P+ + VTQF+ VE GL+K DFL Sbjct: 534 LRRQDGIHAAAVVISRDPLTEYLPIQRKPDPGQDPSEAPIVTQFEMHGVEELGLLKMDFL 593 Query: 558 GLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMK 617 GLRTL++I+ A+E+I R + LDI AI LDD+ +F ML+ + VFQLE M+ Sbjct: 594 GLRTLSVIDRAVELIRATRGVD----LDIDAIALDDEATFAMLRAGDAIGVFQLEGGPMR 649 Query: 618 DLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVL 677 L+++L P FED+ ALVAL+RPGP+ + M ++ DRK+GR+ +SY H L+PVL Sbjct: 650 QLMRQLAPSRFEDVAALVALYRPGPMAANMHVDYADRKNGRKPVSY-----LHPDLEPVL 704 Query: 678 EPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGIN 737 TYG+++YQE +M++AQ ++GY+L AD LR+A GKK +A +R F G +G Sbjct: 705 RDTYGLMIYQESMMRVAQQIAGYSLEEADNLRKACGKKIRTLIAAEREKFIAGCVASGYG 764 Query: 738 AELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKV 797 EL +FD++E FA Y FNKSH+ Y LVSYQT +LKA++P +F+AA++T+ D+ +K+ Sbjct: 765 PELGTALFDIIEPFADYAFNKSHAFGYGLVSYQTAYLKANFPVQFLAAILTSVRDDKDKL 824 Query: 798 VGLVDECWRMGLKILPPDINSGLYHFHVN---DDGEIVYGIGAIKGVGEGPIEAIIEARN 854 + + + +L PD+N+ F V + +I +G+ A++ VGEG + +II+ R Sbjct: 825 AVYLADAAAHHIAVLVPDVNASDVDFSVTSGPEGEQIRFGLAAVRNVGEGLVRSIIDERT 884 Query: 855 KGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAK 914 + G F D R D LNRR LE LI +GAFD G R AL +L AL+ ++ + Sbjct: 885 RSGPFTSFADFLLRVDASVLNRRTLESLIKAGAFDSFGHPRRALYEALEGALERVNERRR 944 Query: 915 AEAIGQADMFGVLAEEPEQIEQSYASC--QPWPEQVVLDGERETLGLYLTGHPINQYL-K 971 G +F +E+ + W +L ER+ LGLY++ HP++ Sbjct: 945 QRDRGLGSLFEEPSEDESVVPDLRLDIGSVEWSTPELLAFERDMLGLYVSAHPMHGVNVD 1004 Query: 972 EIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 + R V + T G+ +T G + A T++G+ + L+D +EVM+F Sbjct: 1005 RLGRDVTPILDLIEADTPPGEPVTVVGAITALAQRTTRKGDLMATLRLEDLQAGIEVMVF 1064 Query: 1032 TDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEA-------REKYARGL 1084 + + L++D I+ ++G++ D G + A + +D A + + Sbjct: 1065 PKTMADHGLHLKQDAIVAITGRI--DGREDGRTLVALAIEPVDTAALTSDDAADGATDAV 1122 Query: 1085 AISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLN 1144 + L R L RLR L H GT L + R +T V P L+ Sbjct: 1123 VLRLPKRLAVPDSLVRLRNVLADHV-GTARAVLDIEG----MRFELAST-SVRPGSSLVG 1176 Query: 1145 DLRGLIGSEQVEL 1157 LR + G +QV + Sbjct: 1177 HLRNVFG-DQVRV 1188 >UniRef50_D0WG97 DNA polymerase III, alpha subunit n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WG97_9ACTN Length = 1194 Score = 1199 bits (3102), Expect = 0.0, Method: Composition-based stats. Identities = 427/1178 (36%), Positives = 646/1178 (54%), Gaps = 48/1178 (4%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG----- 59 FVHL H++YSM+DG +V++AA L MPA+AITD +CG+ + A Sbjct: 24 PFVHLHNHTEYSMLDGATHVKDMVRRAADLDMPAVAITDHGVMCGVPELCDACAAVERET 83 Query: 60 -AGIKPIVGADFNVQCD-----LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 +KPI G + D L H+ +LA N+ GY NL L+S+++ Y Sbjct: 84 GKKVKPIYGCEIYFTEDPEVGTKKRSPLYHMIMLAKNSEGYHNLLHLVSESHMDNY-YYK 142 Query: 114 PIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIR 172 P D + + +G++ S G + R L + A E +++ F P +++EL Sbjct: 143 PRTTLDMIKKHAKGIVATSACIAGIIPRRLRERDVAGAREWAQTFKDIFEPGDFYIELQD 202 Query: 173 TGRPDEE-----SYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDD 227 G EE LA GL +ATND ++ D A +I + I G DD Sbjct: 203 QGISTEEGFSQHELNVQLSNLAHDLGLETIATNDFHYLTREDAKAQDIMLCIGTGSNYDD 262 Query: 228 PKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMS 287 R R + + YM++EEEM E D PEA NTV++A++C+V + + LP+FP + Sbjct: 263 ENRMRFANDEFYMKTEEEMREALRDFPEACDNTVKVAEKCSVELE-RDSILPRFPLPEGY 321 Query: 288 TEDYL-VKRAKEGLEERLAFL--FPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIV 344 TE+ L + ++GL R +E RP+ ER E E VI Q GFP YFLIV Sbjct: 322 TEEMLFREECEKGLIHRYGNNGEITTMDELRAARPDVVERYEYEAGVIIQQGFPAYFLIV 381 Query: 345 MEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDV 404 E+I+W+KDNG+ VGPGRGS AG++ YA+ ITDL+PL+ LLFERFL+PERV MPD DV Sbjct: 382 QEYIRWAKDNGIGVGPGRGSAAGAICTYAMGITDLEPLDNGLLFERFLSPERVEMPDIDV 441 Query: 405 DFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIP 464 DF + R VI+HV D YG D ++ +ITFG + AK +RD RVLGHPYG D+I K I Sbjct: 442 DFDDQHRQDVIDHVRDFYGADHIAGVITFGKLQAKNAVRDAARVLGHPYGVGDKICKTIG 501 Query: 465 PDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524 + G+TL A E L ++Y+ D + + +ID AR +EG R G HA +I + D Sbjct: 502 DELGITLDDALENNVDLKKMYDDDADTRDIIDAARSIEGNIRGEGVHACATIICRDPLVD 561 Query: 525 FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584 P+ D +G +TQ+D GL+K DFLGLRTL +++ A + + R + Sbjct: 562 HVPVKRDTKGGGMITQYDGHYTPELGLLKMDFLGLRTLGVLSRACKNVKARHGLE----I 617 Query: 585 DIAAIPLDDKKSFDMLQ---RSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPG 641 IP++D ++F +++ R +FQ+E L RL P F D++A +AL RPG Sbjct: 618 RPDEIPIEDAEAFRLMRGEMRWGMDGLFQVEGALYVSLFSRLPPRRFSDIVASIALNRPG 677 Query: 642 PLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYT 701 PL+SGMVD+++ +G EI Y D + L+P+LE TYG ++YQEQ+MQI+ +SG++ Sbjct: 678 PLESGMVDDYVKVANGTTEIHYYD-----DRLRPILEETYGTMVYQEQIMQISMAMSGFS 732 Query: 702 LGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHS 761 G AD LR+AMGKKK + M + ++ + EGA +NG + E+A +I++ EKFA Y FNKSHS Sbjct: 733 AGKADRLRKAMGKKKLDIMRQLQADWNEGAVENGYSLEIAKQIWEDAEKFAKYAFNKSHS 792 Query: 762 AAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLY 821 AAYAL+ +T +LKAHYP EFMAAV+++ M N ++++ + C G+ +LPPD+N+ Sbjct: 793 AAYALLVMRTAYLKAHYPYEFMAAVLSSYMGNADRLIKYISSCTHSGIPVLPPDVNTSNL 852 Query: 822 HFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEK 881 F ++G I +G+ ++G+GE ++II+ R G + L D R D K NR+ LE Sbjct: 853 EFTPLEEG-IRFGLAGVRGIGEAVAQSIIDEREANGPYSSLHDFVNRLDAKCYNRKTLEA 911 Query: 882 LIMSGAFDRLGPHRAALMNSLGD--ALKAADQHAKAEAIGQADMFGVLAEEPE---QIEQ 936 L+ SGAFD G R LM+ + D L++A + K GQ MF + A+ P+ + Sbjct: 912 LVKSGAFDSTGYTRKQLMHFIDDTPLLESAAKRQKDRDAGQVSMFDLFADVPDSGFDDDV 971 Query: 937 SYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITA 996 W ++++L E+E L +Y++ HP+ Y + +E K Sbjct: 972 PAPDGIEWDKRMLLAYEKEILKIYVSDHPLRPYERSLESVTKYHLGDLAEHKGDIKNAVF 1031 Query: 997 AGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSF 1056 AGLV + V +T++G ++ L+D +G +E + F +++ +++D I+ + G+ Sbjct: 1032 AGLVASVTVKMTRKGTKMANFDLEDTTGHMECVCF--KYSDFEEAIQEDAIVKIKGRFEH 1089 Query: 1057 DDFSGGLKMTAREVMDID-EAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPV 1115 + ++ A EV +D ++ + L ISL D + RL L + G PV Sbjct: 1090 SERGD--QILAFEVERLDVDSMRETPSNLQISLAAADFDQSVATRLYGILGDY-PGNDPV 1146 Query: 1116 HLYYQRADARARLRFGATWRVSPSDRLL-NDLRGLIGS 1152 LY +++D R + R +V +D LL + + L G Sbjct: 1147 VLYVEQSDGR-KFRAELPIKVDAADNLLYSGIMTLFGR 1183 >UniRef50_Q0C1C2 DNA polymerase III, alpha subunit n=2 Tax=Alphaproteobacteria RepID=Q0C1C2_HYPNA Length = 1140 Score = 1197 bits (3098), Expect = 0.0, Method: Composition-based stats. Identities = 488/1161 (42%), Positives = 685/1161 (59%), Gaps = 33/1161 (2%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M++P F+HL + S +S+++ + A L K MPA+A+TD L G ++ Sbjct: 1 MTKPVFIHLAIRSSFSLLESMITPADLAKWCKQYSMPAMAVTDRNCLFGALELSIKLSDY 60 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 G++PI+ F+V EL LT A ++ GY+ L L S+AY P + + + Sbjct: 61 GVQPIMACCFDVTDGSPKAELFRLTAYAQDDVGYKRLMFLSSRAYLEADDG-VPRLHKKY 119 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 180 L+E EGLILL+GG G+V R +L+G A ++ +P R ++E+ R G +E Sbjct: 120 LLENTEGLILLTGGAEGEVARHILKGRLADARTELSTLATAYPGRCYVEITRHGTQEEIK 179 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 VELA GLP+VAT+D RF+ D AH+ + I +G L R R P QY+ Sbjct: 180 SETGLVELAYELGLPLVATHDARFLKPEDVTAHDAMMCIANGQYLGQDDRKRVE-PDQYL 238 Query: 241 RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKEGL 300 +S EEM LFAD+PEA+ANT EIA RC+V + LP F S + L +A++GL Sbjct: 239 KSPEEMEVLFADLPEAIANTSEIAIRCSVRAETRKPILPNFSKEGRSEGEELALQARQGL 298 Query: 301 EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360 EERLA + R Y +RLE EL +I++MGFPGYFLIV +FI+W+K NG+PVGP Sbjct: 299 EERLAE----ADRLYAERQVYLDRLEYELGIIDRMGFPGYFLIVSDFIKWAKANGIPVGP 354 Query: 361 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420 GRGSGAGSLVA+ L ITDLDPL FDLLFERFLNPERVSMPDFDVDFC E+R +VI +V + Sbjct: 355 GRGSGAGSLVAWVLLITDLDPLRFDLLFERFLNPERVSMPDFDVDFCQERRGEVIRYVRE 414 Query: 421 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGM--TLAKAFEAE 478 YG D+V+ IITFGT+ AKAV+RDVGRV+ PYG VDR++KLIP +P TL +A AE Sbjct: 415 KYGADSVAMIITFGTLQAKAVVRDVGRVMQMPYGQVDRLAKLIPFNPAKPPTLDEAIAAE 474 Query: 479 PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538 P+ + AD V LID AR LEG+ RNAG HA GVVIA + + PLY D P Sbjct: 475 PKFDDEIAADARVGELIDTARALEGMYRNAGTHAAGVVIADRPLVELVPLYNDPRADLPA 534 Query: 539 TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598 TQF+ E AGLVKFDFLGL+TLT+I+ AL I + + A +DD +++ Sbjct: 535 TQFNMKYAEMAGLVKFDFLGLKTLTVIDRALNFIRRDGG-----DVGPAWRSMDDPATYE 589 Query: 599 MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658 ++ ET VFQLE GM+D ++R++P+ ED+IA+++L+RPGP++ + ++ K Sbjct: 590 LMASGETLGVFQLEGAGMRDTLRRVRPNNIEDLIAIISLYRPGPME--NIPVYVQGKEDP 647 Query: 659 EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718 + Y QH LKPVLE TYG+ +YQEQVM++AQ ++GY+LG AD+LRRAMGKKK E Sbjct: 648 ASVRY-----QHPDLKPVLEATYGVPVYQEQVMRMAQEIAGYSLGEADLLRRAMGKKKLE 702 Query: 719 EMAKQRSVFAEGAEKN-GINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAH 777 EM QR F EGA N G+ LA +IFD +EKFAGYGFNKSH+AAYAL+ Y T +LK H Sbjct: 703 EMIAQRRRFVEGAAANKGMKDSLANEIFDTMEKFAGYGFNKSHAAAYALIGYHTAFLKCH 762 Query: 778 YPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGA 837 YP EF+AA M+ D+ NT+K+ E R+ L +L PDINS F VN+DG IVY +GA Sbjct: 763 YPKEFLAASMSLDIGNTDKLAAFFQEAKRLRLHVLAPDINSSQPDFDVNEDG-IVYALGA 821 Query: 838 IKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAA 897 IKGVG ++ + R++GG F++L+D R D K +N++ LE L SGA D L +RA Sbjct: 822 IKGVGVEAMKHVSAVRSEGGPFKDLYDFAERVDPKHVNKKALESLAKSGALDCLEGNRAR 881 Query: 898 LMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETL 957 + + + HA+ + GQ +FG E + + +PW Q LD E +++ Sbjct: 882 VFAVVPMLAQYCASHAEDRSGGQGGLFG---ESEPALRPEFPPSRPWTAQQKLDEEFKSI 938 Query: 958 GLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGIC 1017 G Y +GHP++ L I+R + ++ GK + G+V +KRG + Sbjct: 939 GFYFSGHPLDDVLTSIDRDRVTLAMEVHERAGDGKPLEMIGIVRTRNDKPSKRGGKFAFL 998 Query: 1018 TLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077 T+ D +G LE+M+F + L +Y LL+ + + ++ V+ L++ ++++ AR Sbjct: 999 TISDPTGELEMMVFNEGLQQYGDLLQPGKAVAIT--VTAKLNGEELRLNLDRAVELEAAR 1056 Query: 1078 EKYAR-GLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLY--YQRADARARLRFGATW 1134 L + L D + L + + LE G V + R +R T+ Sbjct: 1057 LSKPSGSLMVRLGPD-ADPEDLAGVIRRLEQVSDGDRGVIIVELILRDGRIVTMRLPQTY 1115 Query: 1135 RVSPSDRLLNDLRGLIGSEQV 1155 + + L+ + G E+V Sbjct: 1116 TIGLRAQ--RALKEVPGVEKV 1134 >UniRef50_C1XIK2 DNA polymerase III, alpha subunit n=2 Tax=Meiothermus RepID=C1XIK2_MEIRU Length = 1257 Score = 1196 bits (3095), Expect = 0.0, Method: Composition-based stats. Identities = 455/1217 (37%), Positives = 661/1217 (54%), Gaps = 92/1217 (7%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAAL--GMPALAITDFTNLCGLVKFYGAGHGAGI 62 +F HL H+ +S++DG A+ L+K + P LA+TD N+ G V+FY G+ Sbjct: 21 KFAHLHQHTQFSLLDGAARLKDLLKWVKQVSPEEPMLAMTDHGNMFGAVQFYKYATELGV 80 Query: 63 KPIVGADFNVQCDLLGDE---------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 KPI+G + V + D HLT+LA N GYQNL+ L S+AY G+ Sbjct: 81 KPIIGYEAYVAAESRFDRKQGKGLDGGYFHLTLLAQNMEGYQNLSRLASRAYLEGF-YGK 139 Query: 114 PIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIR 172 P IDR+ L E N G+I LSG ++ + +L+ ++ + Y F P+RYF+E+ Sbjct: 140 PRIDREILREHNAGIIALSGCLGAEIPQFILQERFEDAEKRLQEYLAIFGPERYFIEIQN 199 Query: 173 TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 G ++ E A+ GL +VATND ++ D +AH + +A+ T DDP R + Sbjct: 200 HGLAEQHKVNRVLKEFADKYGLGLVATNDGHYVKKDDAEAHAVLLAVQSKATWDDPNRWK 259 Query: 233 NYSPQQYMRSEEEMCELFAD--------IPEALANTVEIAKRCNVTV--RLGEYFLPQFP 282 + Y++S +EM + F D + E N+V I + C V + + +Y +P++P Sbjct: 260 FPCDEFYVKSPQEMRQTFEDERNLWGSRMDELFDNSVNIGRMCEVELVPKKVQYRIPKYP 319 Query: 283 TGDMSTED-YLVKRAKEGLEERLAFLFPDEEERLKRRP---------------------- 319 + TE Y + GL +R E R R Sbjct: 320 LPEGRTEVVYFRELTFNGLLKRYPDRVTPELYREFLRKLGRPVPHGDGEVLALELARIED 379 Query: 320 --------------------EYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVG 359 R EL V+ +MGFPGY LIV +FI W+K+NG+ VG Sbjct: 380 LEATRAHLPELREGIQWDGWAILSRAIYELTVVERMGFPGYLLIVSDFINWAKNNGISVG 439 Query: 360 PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVA 419 PGRGS AGSLV YA +IT++DPLE++LLFERFLNP RVSMPD D DF +R +VIE+V Sbjct: 440 PGRGSAAGSLVTYATRITNIDPLEYNLLFERFLNPARVSMPDIDTDFSDVRRGEVIEYVR 499 Query: 420 DMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEA 477 YG + V+QI TFGT+A+KA I+D RV G P D ++KLIP G M L KA E Sbjct: 500 QRYGDEMVAQIGTFGTLASKAAIKDAARVFGLPVKKADELAKLIPVTFGKPMPLDKAIET 559 Query: 478 EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHP 537 P L E D VK ++++A+KLEG++R + HA GVVI+ + D+ PL + Sbjct: 560 IPDLRAEMEKDPLVKRVLEVAQKLEGLSRQSSVHAAGVVISDVPLRDYIPLMRAGDTGAK 619 Query: 538 VTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSF 597 VTQ+D VE G +K DFLGLRTL+ ++ +I + + LD +P+DD K+F Sbjct: 620 VTQYDMGSVEALGFLKMDFLGLRTLSFLDECKRIIKESKGVE----LDYDNLPIDDAKTF 675 Query: 598 DMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHG 657 ++L R ET VFQL+S GM ++ L+P +D+IAL AL+RPGP++ + +I R HG Sbjct: 676 ELLGRGETKGVFQLDSAGMTSAVRGLKPRRIQDIIALGALYRPGPME--NIPTYIRRHHG 733 Query: 658 REEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKP 717 REE+SYP + ++P+LE TYGI +YQEQ+MQIA ++GY+LG AD+LRRAMGKKK Sbjct: 734 REEVSYPQFPNAEKFIRPILEETYGIPVYQEQIMQIATAVAGYSLGEADLLRRAMGKKKM 793 Query: 718 EEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAH 777 EEM KQR+ F EGA KNGI AE A ++FDL+E FA YGFNKSH+AAYA+++YQT ++KAH Sbjct: 794 EEMVKQRAQFKEGAAKNGIPAEEADRLFDLLEAFANYGFNKSHAAAYAILTYQTAYVKAH 853 Query: 778 YPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGA 837 +P EF AAV+T + +++KV + G+++LPPDIN + F + +++G+ A Sbjct: 854 FPVEFFAAVLTVERHDSDKVAEYIRAARTAGVEVLPPDINQSGFSFRALE-KSVLFGLSA 912 Query: 838 IKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAA 897 +K VGE P E I+ R +GG ++ L D R D N+RV+E LI +GAFD GP R Sbjct: 913 VKNVGETPTELILRERERGGPYKSLPDFLRRLDGTVANKRVVESLIKAGAFDAFGP-RGP 971 Query: 898 LMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETL 957 ++ +L D LK A + G +FG E +E + L E+E L Sbjct: 972 MLAALDDLLKWAQAEREQAQSGMMGLFG------ESLEPVIPAVPQLDAITQLRMEKEAL 1025 Query: 958 GLYLTGHPINQYLKEIERYVGGV-----RLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012 G+Y+TGHP+++Y E + ++ + AG+V TK G Sbjct: 1026 GIYVTGHPLSRYQGLREAASCTIEELPQAFAELKGNRNRARLLLAGMVEGIVRKPTKSGG 1085 Query: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072 + TL D +G +EV+ F A DK + +D ++V+ +V D L++ A+EV Sbjct: 1086 MLVRFTLADETGAVEVVAFGRAYDKISPRIAEDAAVLVAVEVEPDGEGETLRVVAQEVFP 1145 Query: 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGA 1132 E E + L + L +D++ L LR L+ +G +PV L + A + Sbjct: 1146 YHEL-EGLPKVLELELDMALLDEEKLLDLRSRLDE-VAGPLPVQLKVRGPGGWALVEARE 1203 Query: 1133 TWRVSPSDRLLNDLRGL 1149 V ++ L L+ L Sbjct: 1204 ---VRAAEEALPVLKDL 1217 >UniRef50_B1GZ26 DNA polymerase III subunit alpha n=2 Tax=cellular organisms RepID=B1GZ26_UNCTG Length = 1174 Score = 1195 bits (3093), Expect = 0.0, Method: Composition-based stats. Identities = 433/1203 (35%), Positives = 680/1203 (56%), Gaps = 75/1203 (6%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAK-------TAPLVKK-AAALGMPALAITDFTNLCGLVK 52 M+ FVHL H++YS++DG + L A MPALAITD N+ G ++ Sbjct: 1 MAAE-FVHLHNHTEYSLLDGACRLIDDKGKPGELFNLIAKEYKMPALAITDHGNMYGAME 59 Query: 53 FYGAGHGAGIKPIVGADFNVQCDLLGDE------------LTHLTVLAANNTGYQNLTLL 100 FY A +GIKPI+G + V D+ HLT+LA + GYQNL + Sbjct: 60 FYLAAKQSGIKPIIGCEIYVAPKSRFDKKNINRITEDNVNYHHLTLLAKDFEGYQNLMRI 119 Query: 101 ISKAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEE 160 +S + G+ P +D++ L + GLI LSG G+V +L++GN Y + Sbjct: 120 VSAGFTEGF-YYKPRVDKEVLKKYRCGLIALSGCLAGEVASALVKGNKKKAQNAAIEYRD 178 Query: 161 HF-PDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAI 219 F D +++E++ G ++ + + +EL+++ +P+VATND F+ D + H+I + I Sbjct: 179 IFDKDNFYIEIMDNGLETQKKIIPSLIELSKSAAIPLVATNDCHFLKKEDAEVHDILLCI 238 Query: 220 HDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLP 279 G L++ KR S Y RS E+M + F+ +PEA+ NT+EIA++ N+ + + LP Sbjct: 239 GTGKMLNETKRLHFDSDLFYYRSAEDMIKTFSSVPEAIKNTLEIAEKTNLEINTDKLLLP 298 Query: 280 QFPTGDM--STEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGF 337 QFP S +YL + GL R + P E++ERL+ EL VIN+MGF Sbjct: 299 QFPIPKEYKSDSEYLETLCRRGLAARYDTIKP----------EHEERLKHELSVINKMGF 348 Query: 338 PGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERV 397 YFLIV +FI+++KD+ +PVGPGRGSG+G++VAY L ITD+ PL++ LLFERFLNP+R Sbjct: 349 ASYFLIVSDFIKYAKDHRIPVGPGRGSGSGAMVAYTLGITDICPLKYGLLFERFLNPDRR 408 Query: 398 SMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVD 457 SMPD D+DF RD+VI++V YG + +QIITFG+M ++ VI+DV RV+G + Sbjct: 409 SMPDLDIDFADYGRDEVIQYVRRKYGEEKCAQIITFGSMQSRLVIKDVARVMGFTPAESN 468 Query: 458 RISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVI 517 I+KLIP ++A+A +A L ++ +ADE++ LI ++KLEG+ R+ G HA G+VI Sbjct: 469 NIAKLIPQ--NASIAEALQASTDLSKLVKADEKIAKLIAASQKLEGLKRHTGVHAAGMVI 526 Query: 518 APTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRA 577 A +IT ++PL + TQ+D + GL+K DFLGL+TLTII+ ++ I ++ Sbjct: 527 ANKEITSYSPLAKGSK-DIVTTQYDGGVLPQLGLLKIDFLGLKTLTIIDDCVKFIREK-- 583 Query: 578 KNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVAL 637 P ++ IPLDDKK++++L ++T +FQLES GM+DLIK+L+P +D+IAL+AL Sbjct: 584 ---NPSFNLDNIPLDDKKTYELLGEAKTMGIFQLESIGMRDLIKKLKPSNIDDIIALIAL 640 Query: 638 FRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVL 697 +RPGP+ SGM+DNF++RKHGR +I Y H + +L+ TYG+ILYQEQVM+++ L Sbjct: 641 YRPGPMGSGMLDNFVNRKHGRTKIVY-----DHPLQESILKDTYGVILYQEQVMKMSVAL 695 Query: 698 SGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFN 757 +G+T G AD LR+AM KK PE + KQR F G ++ G+N +++ KIF+ + F GYGFN Sbjct: 696 AGFTPGEADSLRKAMSKKIPEVIEKQREKFVRGTKEKGVNKKISEKIFNNIVAFGGYGFN 755 Query: 758 KSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMD-------NTEKVVGLVDECWRMGLK 810 KSHSAAY ++SY+T +LKA+YP E++ A+ ++ K+V + + +K Sbjct: 756 KSHSAAYGIISYKTAYLKANYPLEYITALCNNEIGRPATKNNEESKLVAYLGDALAFDIK 815 Query: 811 ILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGY---FRELFDLCA 867 +LPPD+ F D I +G+ A+K VG+G ++I ++R + G F++ D Sbjct: 816 VLPPDVQYSDGKFKTEDKN-IRFGMLAVKNVGKGVTDSIEQSRIENGQLKSFKDWVDFLQ 874 Query: 868 RTDTKKLNRRVLEKLIMSGAFDRLGPH----RAALMNSLGDALKAADQHAKAEAIGQADM 923 R D K +N++ LE LI +G FD G R L+ ++ A + + Q + Sbjct: 875 RIDLKSINKKALESLIKAGVFDSFGKDKFTIRGRLIQNIDSYADKAAKVKQYRESLQGFL 934 Query: 924 FGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGG--VR 981 F + + I S +P L+ E+E LG Y++GHP+ K+I Y + Sbjct: 935 FDNVKTITDDI-LSLQEVKPLEPLEALNFEKEVLGFYISGHPLTHRKKDIIAYSNYRLDK 993 Query: 982 LKDMHPTERGKVITAAGLVVAARVMV-TKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQ 1040 L + K + AG++V+ + + T R ++D G + +LF +K+ Sbjct: 994 LPQLKENADRKTVRIAGMIVSVKKLTSTTRKEPYARFKIEDLHGNVNALLFPKNFEKFGG 1053 Query: 1041 LLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARG---LAISLTDRQIDDQL 1097 L + I+++ G ++ + G L+M ++M IDEA++K + I + + L Sbjct: 1054 YLTLNNIVVIKGWLT--NMQGQLEMITEDIMTIDEAKKKSPSKCDEIRIKFSAASFNVAL 1111 Query: 1098 LNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIG-SEQVE 1156 L++ + H G V+L + + + SD +ND+ +IG + VE Sbjct: 1112 EEELKKIFKIHT-GKTKVYLILEDS-LHGNFSIETEYLSDCSDNFINDVETIIGVKDSVE 1169 Query: 1157 LEF 1159 L + Sbjct: 1170 LHY 1172 >UniRef50_C7N8B2 DNA-directed DNA polymerase III PolC n=2 Tax=Coriobacteriaceae RepID=C7N8B2_SLAHD Length = 1166 Score = 1193 bits (3088), Expect = 0.0, Method: Composition-based stats. Identities = 417/1178 (35%), Positives = 650/1178 (55%), Gaps = 51/1178 (4%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG---- 61 FVHL H++YSM+DG K +V++AA LGMPA+AITD +CG+ + A Sbjct: 3 FVHLHNHTEYSMLDGATKIKAMVRRAADLGMPAVAITDHGVMCGVPELCDAVEAVKKETG 62 Query: 62 --IKPIVGADFNVQCDL-----LGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGP 114 +KPI G + D L HL +LA NN GY NL ++S+++ + P Sbjct: 63 VYVKPIYGCEVYFTEDREIGTRKKSPLYHLILLAKNNVGYHNLLHIVSESHMDNFFY-KP 121 Query: 115 IIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRT 173 D L + +EG+I + G V R L N A + + F P +++EL Sbjct: 122 RTTIDVLEKYSEGIIGTTACMSGIVQRRLDDRNYADALAWTKRFADIFAPGDFYVELQDQ 181 Query: 174 GRPD-----EESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228 G ++ ++A+ GL +ATND ++ D A +I + I G DD Sbjct: 182 GLTSRGGLTQKEINTQLTQIAQELGLKTIATNDFHYLTREDAAAQDIMLCIGTGSLRDDE 241 Query: 229 KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMST 288 R R + + YM++EEEM E D PEA NT+E+A++C V + + LP+FP T Sbjct: 242 NRMRFSNDEFYMKTEEEMREALKDFPEACDNTIEVAEKCFVELE-RDSVLPRFPLPPGYT 300 Query: 289 EDYL-VKRAKEGLEERLAFLFPD-EEERLKRRPEYDERLETELQVINQMGFPGYFLIVME 346 E+ L + ++GLE R + + + ER E E VI Q GFP YFLIV E Sbjct: 301 EEQLFREECEKGLERRYGPDWREIKISDGMHDVSVLERYEYEASVIVQQGFPAYFLIVQE 360 Query: 347 FIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 406 +I+W+K++G+ VGPGRGS AG++ YA+ ITDL+PL LLFERFL+PERV MPD DVDF Sbjct: 361 YIRWAKEHGIGVGPGRGSAAGAICTYAMGITDLEPLSNGLLFERFLSPERVEMPDIDVDF 420 Query: 407 CMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPD 466 E+R +VI+HV + YG D ++ +ITFG + AK +RD RVLGHPY DR+ K+I + Sbjct: 421 EDERRQEVIDHVREFYGADHIAGVITFGKLQAKNAVRDAARVLGHPYNTGDRLCKVIGDE 480 Query: 467 PGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 G+ L A E P L +IY+ + E + ++D A +EG R G HA +I + D Sbjct: 481 LGIKLKDAIENNPDLAKIYKEEPESREILDSAMSIEGNIRGEGVHACATIICRDPLVDHV 540 Query: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586 P+ D +G +TQ+D GL+K DFLGLRTL +++ A + R + Sbjct: 541 PVKRDTKGGGMITQYDGHYTPELGLLKMDFLGLRTLGVLSRACRNVKDRFGIT----IVP 596 Query: 587 AAIPLDDKKSFDMLQRSET----TAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 IP+DD+ ++ ++ R ET +FQ+ES L R++P F D++A +AL RPGP Sbjct: 597 DEIPIDDEGAYKLM-RLETPYSMDGLFQVESALYVSLFARMKPRTFSDIVASIALNRPGP 655 Query: 643 LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 L++G VD ++DR+ GR+ +SY D + LKP+LE TYG I+YQEQ+MQI+ +SG++ Sbjct: 656 LENGFVDLYVDRRMGRKPVSYYD-----DRLKPLLEETYGTIVYQEQIMQISMAMSGFSA 710 Query: 703 GGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSA 762 G AD LR+AMGKK+ E M + + + GA +NG + E+A +I+ E+FA Y FNKSHSA Sbjct: 711 GKADKLRKAMGKKRIEVMMQLKDDWCNGAVENGFSLEIAERIWHDAEEFAKYAFNKSHSA 770 Query: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 AYA++ +T ++KAHYP E+MAAV+++ M + +K++ + C R G+ +LPPDINS Sbjct: 771 AYAVLVCRTAYMKAHYPYEYMAAVLSSYMGSADKLIKYISSCTRNGIPVLPPDINSSNLE 830 Query: 823 FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKL 882 F ++G I +G+ ++GVG E+II R++GG F L D R D K NR+ LE L Sbjct: 831 FTPLEEG-IRFGLAGVRGVGAAVAESIIAERDEGGPFTSLHDFVNRVDGKCYNRKTLEAL 889 Query: 883 IMSGAFDRLGPHRAALMNSLGD--ALKAADQHAKAEAIGQADMFGVLAEEPE---QIEQS 937 + +GAFD G R LM + + L+ + + GQ MF + + + + + Sbjct: 890 VKAGAFDSTGYTRKQLMYFIDETSLLEDVAKRQRDRENGQVSMFDLFGDMEDSGFEEDIP 949 Query: 938 YASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERG-KVITA 996 W ++ +L E+ L +Y++ HP++QY + + R + +L D+ + K Sbjct: 950 APDGVEWDKRTLLAFEKSILKIYVSDHPLSQYERSL-RSISKFQLGDLADHKGDIKNGVF 1008 Query: 997 AGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSF 1056 GL+ ++ +TK+G ++ ++D +G ++ + F D+++ +E+D I+ V G+ Sbjct: 1009 CGLISTVQIKMTKKGKKMATFVMEDTTGFVDCVCF--KYDEFKDAIEEDAIVKVKGKFEH 1066 Query: 1057 DDFSGGLKMTAREVMDID-EAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPV 1115 + ++ A EV +D ++ ++ L I L ++ +L L + G PV Sbjct: 1067 SERGD--QLMAFEVERLDVDSMKQGPSSLQIMLQSSDLNSMTSAQLNNVLANY-PGRDPV 1123 Query: 1116 HLYYQRADARARLRFGATWRVSPSDRLL-NDLRGLIGS 1152 L Q++D R + R V ++ L+ +++ + G Sbjct: 1124 VLLVQQSDGR-KFRAELPVTVDAANNLMYSEIMSVFGR 1160 >UniRef50_B1ZMU7 DNA polymerase III, alpha subunit n=3 Tax=Opitutaceae RepID=B1ZMU7_OPITP Length = 1271 Score = 1191 bits (3083), Expect = 0.0, Method: Composition-based stats. Identities = 447/1273 (35%), Positives = 644/1273 (50%), Gaps = 137/1273 (10%) Query: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61 ++P FVHL VHSDYS++DG + L+K+ LGM A+A+TD NL G ++FY A A Sbjct: 4 ADPNFVHLHVHSDYSLLDGSCRIDRLLKRTNELGMKAIALTDHGNLYGAIEFYKAAKDAQ 63 Query: 62 IKPIVGADFNVQCDLLGDE----------LTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111 +KP++G + + ++ + HL +LA N TGYQNL L+S A+ +G+ Sbjct: 64 VKPLIGCELYLVEHSRLEKHGRSDDDGKTIFHLGLLARNLTGYQNLLKLVSDAHLKGF-Y 122 Query: 112 AGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLEL 170 P D + L + GLI SG V + LL + A + E F + YF+EL Sbjct: 123 YKPRTDIETLAKYAGGLIGFSGCLASLVPQHLLNDREDEARKACARFVEIFGRENYFIEL 182 Query: 171 IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230 G P++ + ++LA+ L V+ +NDV +++ D H+ + I G +DD KR Sbjct: 183 QDHGIPEQRKIIPGLLDLAQEFKLQVICSNDVHYVNHGDAGPHDAMLCIQTGSKIDDEKR 242 Query: 231 PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE--YFLPQFPTGDMST 288 R Q Y++S EEM ++F ++P +L NT +A C + + + P++P Sbjct: 243 MRFSGSQFYLKSREEMAQVFREVPASLTNTQLVADMCELAIPFPKGSERYPKYPLPPEIK 302 Query: 289 ED---YLVKRAKEGLEERLA--------------------------FLFPDEEERLKRRP 319 D YL GL R P + L Sbjct: 303 TDRGGYLQDLCVAGLRRRYGVDYFAAASHPAAAERLDKLTNLPAGEKPQPPDYTGLTHEE 362 Query: 320 EYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDL 379 E R+ EL +I GF YFL+V +FI W+K +GVPVGPGRGSGAG LVAY L IT+L Sbjct: 363 ELVVRMGYELSIIRVTGFIDYFLVVWDFIAWAKSHGVPVGPGRGSGAGCLVAYLLGITNL 422 Query: 380 DPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAK 439 DPL F LLFERFLNPERVS PDFD+DFCM +R++VI +V + YG+D V+ IIT+GT+ AK Sbjct: 423 DPLRFKLLFERFLNPERVSPPDFDIDFCMRRREEVINYVREKYGKDCVANIITYGTLGAK 482 Query: 440 AVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMAR 499 VIRDV RV P+ DR++K+IP + +TL A +L + K ++D A Sbjct: 483 MVIRDVSRVHNLPFAEADRLAKMIPDELNITLTDAIAKSAELSSEIARNPVAKKIVDQAL 542 Query: 500 KLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGL 559 LEG+ RN GKHA G++I + DF PL QFD V GL+K DFLGL Sbjct: 543 VLEGMVRNTGKHAAGIIITDQPLDDFVPLTLQ--EGDVTVQFDMGAVTKLGLLKMDFLGL 600 Query: 560 RTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDL 619 +TLT+I A++ + + +P DI IPLDD K++ ML +T VFQLES GM+ Sbjct: 601 KTLTVIADAVDNVRR----TADPKFDIETIPLDDPKTYAMLNAGKTVGVFQLESSGMQSA 656 Query: 620 IKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEP 679 K++ +D+ A+ AL+RPGP+Q + ++ K + YP H L+ L+ Sbjct: 657 CKQVGVSNIDDINAICALYRPGPMQ--FIPDYARGKKDPSTVEYP-----HPLLEQSLQE 709 Query: 680 TYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEK-NGINA 738 TYGII+YQEQVM+ A++++GYTLGGADMLRRAMGKK E MAK+R F EGA++ N I+ Sbjct: 710 TYGIIVYQEQVMECAKIIAGYTLGGADMLRRAMGKKDAEAMAKERVKFVEGAKRVNAIDE 769 Query: 739 ELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVV 798 + A +IFDL+ KFA YGFNKSHSAAYALVSYQT +LKA+YP +FMAAV+TA++ N EKV Sbjct: 770 KKANEIFDLLNKFASYGFNKSHSAAYALVSYQTAFLKANYPVQFMAAVLTAELGNAEKVS 829 Query: 799 GLVDECWRMGLKILPPDINSGLYHFHVN-------------------------------- 826 + E MG+ +L PDIN F Sbjct: 830 HFIAEAEAMGITVLGPDINESREMFTPVLRGASSPRAQSPESRVQSQADSELSALNSQLS 889 Query: 827 ------DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLE 880 G I +G+ IKGVGE + IIE R+K G F + D AR D + +N+RVLE Sbjct: 890 AAEADRAGGAIRFGLAGIKGVGELAAQKIIEERDKNGAFCDFDDFAARMDGRAVNKRVLE 949 Query: 881 KLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEE---------- 930 L+ +GAFD G R L + + AL A+ A GQ + AE+ Sbjct: 950 HLVKTGAFDYSGAPRKPLFDGIDAALATVAARARDRAAGQHSFLDMFAEDLAPKKNGKNG 1009 Query: 931 -------------------PEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLK 971 Q S + L E+E LG Y++GHP+N + Sbjct: 1010 SNGHGAATPSSRPASGSDFSTLDSQLSTSSDDFTSTERLTFEKELLGFYVSGHPLNVFAG 1069 Query: 972 EIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKR-GNRIGICTLDDRSGRLEVML 1030 + + + ++ G+V ++K+ TL ++G L + + Sbjct: 1070 -LTEAIDTYPITELLNQGDRTEFRLCGIVSGIAKRLSKKDNRPWASFTLATKAGALPLNM 1128 Query: 1031 FTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTD 1090 F D Y +L ++ +++V G + + G ++ +E ++ R + L Sbjct: 1129 FADGYANYGTVLAENALVLVQGNIIVNQ--EGARVNVKECYPLENQIAGLVRKVTWLLRP 1186 Query: 1091 RQ-IDDQLLNRLRQSLEPHRSGTIPVHLYYQRADAR---ARLRFGATWRVS-PSDRLLND 1145 ++LR +L+ SG + L + + A + TW+V+ PS Sbjct: 1187 AHPELAGFFHQLRATLDKQ-SGDTRLELGFAFPNRFAPCAEISTALTWKVNGPS---FQA 1242 Query: 1146 LRGLIGSEQVELE 1158 LR V++E Sbjct: 1243 LRSHPAVAGVQIE 1255 >UniRef50_C6VZ84 DNA polymerase III, alpha subunit n=3 Tax=Sphingobacteriales RepID=C6VZ84_DYAFD Length = 1216 Score = 1190 bits (3080), Expect = 0.0, Method: Composition-based stats. Identities = 426/1233 (34%), Positives = 659/1233 (53%), Gaps = 106/1233 (8%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 +F HL H+ +S++DG A L KKA MPA+AITD N+ G+ +F G+ GIKP Sbjct: 2 QFSHLHCHTQFSLLDGAADIKKLFKKAKEDNMPAVAITDHGNMFGVFEFVAEGNKQGIKP 61 Query: 65 IVGADFNVQCDLL--------GDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPII 116 IVG +F V D D H +LA + GY+NL + S + G P I Sbjct: 62 IVGCEFYVVEDRHVRQFTKDKKDVRHHQLLLAKDEIGYKNLVKMCSLGFIEGMYGKYPRI 121 Query: 117 DRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRP 176 D+D +++ ++GLI + + ++++R + ++ + F D +++EL R Sbjct: 122 DKDLIVQYHKGLIATTCCIGAIIPKTIIRQGEEAAEREFKWWLDLFGDDFYVELQRHDIR 181 Query: 177 DEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFT--------LDDP 228 D+ ++ A + ++ +ND ++D D++AH+I + I+ G DD Sbjct: 182 DQYIVNEVLIKFARKYNVKIICSNDSHYVDRDDWNAHDILLCINTGDKQSTPSAKDFDDE 241 Query: 229 K------RPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFP 282 K R Y+ Q Y + EM +LF D+PE+L NT EI + + LP FP Sbjct: 242 KGIPKGSRFAFYNDQFYFKKTSEMLQLFNDLPESLDNTNEIVDKIKTLDLRKDILLPNFP 301 Query: 283 TGDM--------------------STEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYD 322 D + +YL EG ++ PE + Sbjct: 302 IPDEFKTHTLSEMVGKKELTADVLNQWEYLRHLTFEGARKKY----------DVVTPEIE 351 Query: 323 ERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPL 382 ERL ELQ I MGFPGYFLIV +FI + GV +GPGRGS AGS VAYA+ IT++DP+ Sbjct: 352 ERLNFELQTIRNMGFPGYFLIVADFIDAGRKMGVFIGPGRGSAAGSAVAYAIGITNIDPV 411 Query: 383 EFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVI 442 ++DLLFERFLNP+R+SMPD D DF + R +VI++V YG + V+QI+T+GTMAAK+ I Sbjct: 412 KYDLLFERFLNPDRISMPDIDTDFDDDGRQKVIDYVVKKYGYNQVAQIVTYGTMAAKSAI 471 Query: 443 RDVGRVLGHPYGFVDRISKLIPPDP--GMTLA---------------------KAFEAEP 479 +DV RV+ P + ++KL+P P MTL E Sbjct: 472 KDVARVMDLPLPDANMLAKLVPDKPTYNMTLNRIFTAPLEGEGSLMKKEGISPDELENVK 531 Query: 480 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 539 ++ I ++ +++ AR+LEG RN G HA G++IAP+ +T+ P+ ++ +T Sbjct: 532 RMRAIAVGNDLQASVLQEARRLEGTVRNTGIHAAGIIIAPSDLTEIIPVSTSKDSDFLIT 591 Query: 540 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 599 Q+ +E AG++K DFLGLR L+II AL MI + + I +PLDD K F++ Sbjct: 592 QYQGKIIEDAGVIKMDFLGLRNLSIIKEALRMIKNNYGHD----IVIDDVPLDDPKVFEL 647 Query: 600 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 659 QR ET A+FQ ES GMK ++ L PD FE +IA+ AL+RPGP+ + NFI RK+G+E Sbjct: 648 FQRGETNAIFQFESDGMKKYMRDLIPDRFEHLIAMNALYRPGPIA--YIPNFIRRKNGQE 705 Query: 660 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 719 E++Y L+ L TYGI +YQEQVM ++Q L+G+T G AD LR+AMGKK+ E Sbjct: 706 EVTYDL-----PELEEYLADTYGITVYQEQVMLLSQKLAGFTKGQADTLRKAMGKKQIET 760 Query: 720 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 779 + K + F +G + G++A+ KI+ E FA Y FNKSHS YA V+YQT +LKAHYP Sbjct: 761 LNKLKGDFMKGGTEKGLDAKKLEKIWTDWEAFASYAFNKSHSTCYAFVAYQTAYLKAHYP 820 Query: 780 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 839 AE+MAAV+T+ + + +K+ ++EC + L +L PDIN F VN GEI +G+ +K Sbjct: 821 AEYMAAVLTSSLGSIDKITFFMEECKNLSLPVLGPDINESERQFSVNKKGEIRFGLAGVK 880 Query: 840 GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRL-GPHRAAL 898 G G+ +E+IIE R KGG F+++FD R + + +N++ LE L +GAFD HRA Sbjct: 881 GSGDAAVESIIEERAKGGPFKDVFDFMTRVNLRTVNKKTLESLAYAGAFDCFTDYHRAQY 940 Query: 899 MNS--------LGDALKAADQHAKAEAIGQADMFGVLAEEPEQI-EQSYASCQPWPEQVV 949 + + ++ A+ + ++ QA +FG+L + + + A PW + Sbjct: 941 FTAEQGENGTFIEKLIRYANNYHAEKSSAQASLFGMLGDSGSTLAKPKAADIGPWDDLAK 1000 Query: 950 LDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMH-------PTERGKVITAAGLVVA 1002 L E+E +G Y++GHP++ + E++ + K M P GK I AG+V + Sbjct: 1001 LRYEQEVVGFYISGHPLDTFRAELDNFCNCTLDKVMEINEGERAPKYYGKDINVAGIVTS 1060 Query: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFD-DFSG 1061 A+ ++K G+ I ++D G +E+++ + +++ L+ + L + G+V Sbjct: 1061 AQERMSKNGSLFMIFKIEDYQGAMEMLIGGEDYIRFKNYLQVGQFLYIKGKVQNRWKQED 1120 Query: 1062 GLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQR 1121 + ++ + E EK R + I+LT QID Q ++ L ++ + G V + + Sbjct: 1121 QFEFKISQIQLLPEIMEKMCRKIKINLTLDQIDAQFIHVLNETFGSY-PGGCQVSMTVKD 1179 Query: 1122 ADARARL-RFGATWRVSPSDRLLNDLRGLIGSE 1153 + + +RV+PS+ L LRG G + Sbjct: 1180 PETHLEVEMLSRGYRVAPSNELFKVLRGFHGVK 1212 >UniRef50_B9JDK3 DNA polymerase III alpha subunit protein n=54 Tax=cellular organisms RepID=B9JDK3_AGRRK Length = 1187 Score = 1190 bits (3080), Expect = 0.0, Method: Composition-based stats. Identities = 479/1177 (40%), Positives = 687/1177 (58%), Gaps = 51/1177 (4%) Query: 3 EPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGI 62 P FVHLRVHS YS+++G ++ KAA PA+A+TD NL ++F G+ Sbjct: 39 TPEFVHLRVHSAYSLLEGALPLKKILAKAAGDNQPAIAVTDTNNLFVALEFSQKAMDEGL 98 Query: 63 KPIVGADFNVQCDLLGD-----------ELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111 +PI+G ++ + + +L + + AA GY+ L L+S+AY G G Sbjct: 99 QPIIGCQVSIDMEDGVEGEKRGPQQALAKLPSIVLFAATERGYERLVDLVSRAYLGGEGN 158 Query: 112 AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170 I WL E+ EG+I L+G G V +L G++ + + F DR ++EL Sbjct: 159 QAVHITASWLEEIGTEGMIALTGSLGGPVDMALKEGHAPQALSRLLALKRLFGDRLYIEL 218 Query: 171 IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230 R G + + + LA LP+VATN+ F D+DAH+ +A+ + D R Sbjct: 219 QRHGTY-DRRHEQKMIALAYEHELPLVATNEAFFPTRDDYDAHDALMAVAHNAIVSDDTR 277 Query: 231 PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTED 290 R +P Y++S +M +LFA++PEAL NTVEIA+RC+ ++ + LP+F E+ Sbjct: 278 FRL-TPDHYLKSRADMAKLFANLPEALENTVEIARRCSFVLKTRKPILPRFTGAADDEEE 336 Query: 291 -------YLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLI 343 L +A EGL++RLA L +Y ERLE EL VI +M FPGYFLI Sbjct: 337 ADRAESAELRAQAIEGLDQRLASL---GMAPGYVEKDYRERLEFELSVIERMKFPGYFLI 393 Query: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 V +FI+W+K + +PVGPGRGSGAGSLVAYAL ITD+DPL F LLFERFLNPERVSMPDFD Sbjct: 394 VADFIKWAKRHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDFD 453 Query: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 +DFC ++R++VI +V YGR+ V+QIITFG++ A+A +RDVGRVL PYG VD+I KL+ Sbjct: 454 IDFCQDRREEVIRYVQAKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLV 513 Query: 464 PPDPG--MTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTK 521 P +P L +A + EP+L E + + V L+D+A+K+EG+ R+A HA G+VI Sbjct: 514 PNNPANPTPLHQAIKEEPRLQEEADKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRP 573 Query: 522 ITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGE 581 ++ P+Y D PVTQF+ VE AGLVKFDFLGL+TLT++ A++ + KR Sbjct: 574 LSKLVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKTAVDFVAKRG----- 628 Query: 582 PPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPG 641 +D+A+IPLDDKK++DML R ET VFQ+ES GM+ + ++PDC ED+IALVAL+RPG Sbjct: 629 ISIDLASIPLDDKKTYDMLSRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPG 688 Query: 642 PLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYT 701 P++ + + RKHG EEI H ++ +L+ T G+I+YQEQVMQ+AQVLSGY+ Sbjct: 689 PME--NIPVYNARKHGEEEIE-----SIHPTIDYLLKETQGVIVYQEQVMQVAQVLSGYS 741 Query: 702 LGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHS 761 LG AD+LRRAMGKK EM +QR F +GA KNG++ + IFDL+ KFA YGFNKSH+ Sbjct: 742 LGEADLLRRAMGKKIKAEMDQQRERFVDGAVKNGVSKGQSDVIFDLLAKFANYGFNKSHA 801 Query: 762 AAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLY 821 AAYA+VSYQT ++KAHYP EF+AA MT DM NTEKV + R+G++++ P I + Sbjct: 802 AAYAIVSYQTAYMKAHYPVEFLAASMTLDMANTEKVNDFRQDAKRLGIEVIAPSIQTSFR 861 Query: 822 HFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEK 881 F + I Y + A+KGVGE ++ I+E R F + D C R D K++NRRVLE Sbjct: 862 RFE-TGENRIYYALAALKGVGESAVDHIVEVRG-DQPFAGIEDFCLRIDPKQINRRVLES 919 Query: 882 LIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASC 941 LI +GAFD RA L+ + + A + + GQ DMFG A PE+I S+ Sbjct: 920 LIAAGAFDCFEIDRAQLIGGIDRIMGYAQVAQENKRSGQHDMFGSAASGPEKI--SFPPF 977 Query: 942 QPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERG-KVITAAGLV 1000 PW L E + LG YLT HP++ Y +++ ++G AG V Sbjct: 978 TPWLASERLLREFQVLGFYLTAHPLDTYKSVLDKMRVQNFADFSAAVKQGASNGRLAGTV 1037 Query: 1001 VAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFS 1060 ++ + T+ GN++GI D SG+ E +LF++ L++Y+ +LE + +V+ D+ Sbjct: 1038 ISKQERKTRTGNKMGIFVFSDASGQFEAVLFSEVLNQYRDVLEVGKSFVVTA--QADERP 1095 Query: 1061 GGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ 1120 G+ + + ++E + + L + + D L + L G + + + Sbjct: 1096 EGISLRLQTAQSLEEKSLQMQKALRVYVR----DSGPLKAVAAHLNAKGDGLVSFIVIKE 1151 Query: 1121 RADARARLRFGATWRVSPSDRLLNDLRGLIGSEQVEL 1157 + +R++P + LR G VEL Sbjct: 1152 EGKREVEVVLAEKYRITP--EIAAALRTAPGVIDVEL 1186 >UniRef50_D2LTB4 DNA polymerase III, alpha subunit n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LTB4_BACS4 Length = 1128 Score = 1189 bits (3077), Expect = 0.0, Method: Composition-based stats. Identities = 418/1168 (35%), Positives = 658/1168 (56%), Gaps = 53/1168 (4%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS FVHL VHS+YS++ K LVK+A LG ALAITD + G++ FY A Sbjct: 1 MS---FVHLHVHSEYSLLRSTGKLEELVKQAKHLGYEALAITDIDAMYGVIPFYKACLKN 57 Query: 61 GIKPIVGADF-NVQCDLLGDELTH-LTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDR 118 IKPI+G + V+ + H L LA NN GYQ+L L ++A ++ + GP + Sbjct: 58 NIKPIIGVELAYVKNQDEVKKDHHRLLFLAENNEGYQSLIRLTTRAQEKS-SSFGPYVTY 116 Query: 119 DWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRTGRPD 177 + L + G+I +S G V + + A + + + F + FLEL R + Sbjct: 117 EELQANSNGVIAISPFAEGLVQQYIYDKQDASALQHFEWLQSIFGKENVFLELQNHWRQE 176 Query: 178 EESYLHAAVEL--AEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYS 235 E L A + + V+A+N + F DAH +I G LD+ S Sbjct: 177 EREKLLAISNWLKGKEDAIRVIASNHIHFTHKEQHDAHRAIQSIRLGIKLDEL-PHDYSS 235 Query: 236 PQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTE-DYLVK 294 + Y++S +EM LF EA NT+ +A +CNV + LG LP FP + +T +YL + Sbjct: 236 SEYYLKSIDEMHHLFKKDGEASRNTLRVADKCNVKIELGNMILPHFPLPNETTATEYLRE 295 Query: 295 RAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDN 354 +G++ER E +RL+ EL+VI++M + YFLIV +F++++ + Sbjct: 296 LCYKGIQERYENP----------SEETWKRLDYELEVISEMKYEDYFLIVADFMRYAHEK 345 Query: 355 GVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQV 414 + GPGRGS AGS+VAY LKIT++DP+++ L+FERFLN ER+SMPD D+DF +RD+V Sbjct: 346 KILTGPGRGSSAGSIVAYVLKITNVDPMKYGLIFERFLNRERISMPDIDIDFPDNRRDEV 405 Query: 415 IEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKA 474 I +V + YGR V+QIITFGT+AAKA IRDVGRVLG +D+ISK IP P +TL A Sbjct: 406 IRYVKEKYGRTHVAQIITFGTLAAKAAIRDVGRVLGIELPIIDKISKSIPSRPNITLENA 465 Query: 475 FEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEG 534 + L + E++E+V L +A+++EG+ R++ HA G+V++ +T+ PL + Sbjct: 466 LKESTVLQGMIESEEKVAELFTIAKEVEGLPRHSSIHAAGIVMSKEPLTNVVPLQIGND- 524 Query: 535 KHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDK 594 + +TQF D+E GL+K DFLGLR L+ I L++I+ ++ + +++ IP D Sbjct: 525 EMYLTQFPMGDIEDIGLLKMDFLGLRNLSFIEQILKLIHNQQHID----IELNNIPFHDV 580 Query: 595 KSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDR 654 +F +L + +T+ VFQLES GM+ ++KRL+P FED++A+ AL+RPGP++ + +I R Sbjct: 581 NTFTLLGKGQTSGVFQLESTGMRSVLKRLKPTEFEDIVAVNALYRPGPME--NIPVYIRR 638 Query: 655 KHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK 714 H E+++YP H SL+ +L PTYG+++YQEQ+MQIA ++G++LG AD+LRRA+GK Sbjct: 639 LHKEEKVTYP-----HPSLEEILSPTYGVLIYQEQIMQIASKMAGFSLGEADILRRAVGK 693 Query: 715 KKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWL 774 KK + + +QR F +G+ G + + A ++++L+ +FA YGF +SH+ AY++++Y +L Sbjct: 694 KKRDVLEEQRQKFVQGSISKGYDEKEANEMYNLILRFADYGFPRSHAVAYSIIAYYLAYL 753 Query: 775 KAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYG 834 KA+Y EFM A+M + + + +K+ + E R G+K+ PP I F + + +I G Sbjct: 754 KANYQLEFMTALMGSVIHHHDKLGEYITEARRSGMKVHPPSIQQSEAQFSI-KNKDIWIG 812 Query: 835 IGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPH 894 + AIK VG ++AI+E R K F LFDLCAR T+ L +R L+ LI++GA D + Sbjct: 813 LHAIKNVGVQAVQAILEERAKS-DFDSLFDLCARIPTRLLPKRALDALIVAGALDCIHDD 871 Query: 895 RAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGER 954 RA L+ S+ DA++ ++ + E Q ++F E + Y S P + L+ E+ Sbjct: 872 RAQLLASVDDAIEYGEKLREQEKNAQTELF-----IEEVKQPEYMSVPPLSSKDRLNFEK 926 Query: 955 ETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRI 1014 + LG Y +GHPI E+ RL + E+ + AG++ +V+ TK+G+++ Sbjct: 927 QVLGFYASGHPIES---ELALVESFGRLSVIDAKEKKSTLRIAGMIEDVKVIKTKKGDQM 983 Query: 1015 GICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDID 1074 L D +G +++ F + + L+K ++ V G V G K+ + I Sbjct: 984 AFAQLSDETGEIDLTFFPEVYKDCRLKLQKGELVFVQGNVQEHKGEG--KVVVEKCTTIS 1041 Query: 1075 EAREKYAR----GLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRF 1130 + K A+ L + + L L++ L G + V + Y+R + L Sbjct: 1042 LLKSKKAKGTEPTLYLKINALHEKKG-LTALKKEL-EMSPGNVSVIIVYERT--KKALHL 1097 Query: 1131 GATWRVSPSDRLLNDLRGLIGSEQVELE 1158 W VS +RLL LR L+G E V L+ Sbjct: 1098 SEMWNVSADERLLLKLRSLLGKENVYLK 1125 >UniRef50_D1NST8 DNA polymerase III, alpha subunit n=1 Tax=Bifidobacterium gallicum DSM 20093 RepID=D1NST8_9BIFI Length = 1185 Score = 1188 bits (3073), Expect = 0.0, Method: Composition-based stats. Identities = 424/1203 (35%), Positives = 648/1203 (53%), Gaps = 67/1203 (5%) Query: 1 MSE-PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59 M++ FVHL H+ YS++DG +K LV++ LGM A+ ITD N+ G + + Sbjct: 1 MTQTADFVHLHNHTHYSLLDGASKIPNLVRRTKELGMNAVGITDHGNMHGAYELWSEAVA 60 Query: 60 AGIKPIVGADFNVQCDLLGDE---------------------LTHLTVLAANNTGYQNLT 98 G+KPI+G + + + +THLT+ A N+ G NL Sbjct: 61 NGVKPILGIEAYATPETSRFDKSRVHWGTEEQRRDDVSGGGLITHLTLWAENDEGLVNLL 120 Query: 99 LLISKAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFY 158 S A G P +D++ L +G+I SG G V L G Sbjct: 121 KASSVANLEGRVMRYPRMDKEVLQTYAKGIICGSGCPSGIVQTRLRLGQFDEALRAAGEL 180 Query: 159 EEHFP-DRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRV 217 ++ F + +++EL+ E + + +A+ P++ATND ++ D A + + Sbjct: 181 QDIFGKENFYIELMDHNLSIERKVTNDLLTIAKKLDAPLLATNDSHYVMPEDASAQDAML 240 Query: 218 AIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-- 275 I+ G TLD+P R + Y+R EEM ELF ++PEA NT+E+A+RCNV E Sbjct: 241 CINSGSTLDEPGRFKFEGEGYYLRPAEEMRELFKELPEACDNTLEVAERCNVIFDDHEDG 300 Query: 276 YFLPQFPTGDM-STEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQ 334 F+P+F + +++ +EGLE+R P+ E ++ + E +I Q Sbjct: 301 AFMPEFDCPEGWDETSLFLRKVEEGLEKRYDGNPPE---------EVLKQADYECGIICQ 351 Query: 335 MGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNP 394 M F GYFL+V ++I W+K++ V VGPGRGS AG++VAYA+ ITDLDPL+ L+FERFLNP Sbjct: 352 MQFCGYFLVVADYINWAKEHDVMVGPGRGSAAGAMVAYAMGITDLDPLQHGLIFERFLNP 411 Query: 395 ERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYG 454 ERVS+PD DVDF E R +V+++VAD YG D V+Q + +GT+ K ++D R++G+ + Sbjct: 412 ERVSLPDIDVDFDPEGRMRVLDYVADKYGHDKVAQCVIYGTIKTKQALKDSARIMGYEFS 471 Query: 455 FVDRISKLIP--PDPGMTLA---------KAFEAEPQLPEIYEADEEVKALIDMARKLEG 503 +R++K +P G +A K + + E+Y++D +VK + D A +EG Sbjct: 472 MGERVTKALPPAQTGGKDIAIRDIFNPDAKRYAEAREYRELYDSDADVKRITDQAMGIEG 531 Query: 504 VTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLT 563 + R G HA ++ ITD +PL +G T F+ E GLVK DFLGL LT Sbjct: 532 LIRQTGVHACATIMGSKPITDTSPLLERTDGTVTTT-FEYHTCETLGLVKMDFLGLSNLT 590 Query: 564 IINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRL 623 +I+ L+ I G+ +D IPLDDK +F++L ET VFQL+S GM+ L+K L Sbjct: 591 VIHDTLKNIENN----GKESIDYTKIPLDDKATFELLSSGETLGVFQLDSDGMRSLLKML 646 Query: 624 QPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGI 683 +PD F D+ AL+AL+RPGP+ N+ RK+G+++I P E+L+P+L+ TYG+ Sbjct: 647 RPDNFSDISALIALYRPGPMGMDSHTNYAKRKNGQQQID-PIHPEVAEALEPILKETYGL 705 Query: 684 ILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMK 743 I+YQEQ+ A++L+GY+LG AD+LRRAMGKKKPE +AK++ F +G + +G + E A Sbjct: 706 IVYQEQIQFAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFQGMKDHGYSEEAAQA 765 Query: 744 IFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDE 803 ++D+ FAGY FNK+HSAAY L+SY T +LKAHYP EFMAA++ +N +K + E Sbjct: 766 VWDVFLPFAGYAFNKAHSAAYGLISYWTAYLKAHYPVEFMAALLQNAKNNKDKTALYLGE 825 Query: 804 CWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKG-GYFREL 862 RMG+K+L PD+N LY + D + +G+GA++ VGE ++ II RN G G + Sbjct: 826 ARRMGIKVLSPDVNESLYEYSAVGD-VVRFGLGAVRNVGESAVQDIIAERNNGKGKYVNF 884 Query: 863 FDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQAD 922 D R LNRR++E LI +GAFD + P+R AL A+ + + +A GQ D Sbjct: 885 MDYIQRVPLPALNRRLVESLIKAGAFDSIEPNRRALFQVHEAAIDSYVNIKRKQAEGQFD 944 Query: 923 MFGVLAEEPE-----QIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYV 977 +F L + + + W ++ L+ ERE LGLY++ HP++ + Sbjct: 945 LFADLDGDEKSDTMGDARIDIPDIEEWDKKTKLNFEREMLGLYVSDHPLSGMQSVLAGLR 1004 Query: 978 GGVRLKDMH---PTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDA 1034 + + E +T AGLV V+KRGN + T++D ++ MLF Sbjct: 1005 EMSIARLIDRAPQMEDRTQVTIAGLVTHVERKVSKRGNAWALITVEDMESSIQCMLFGKV 1064 Query: 1035 LDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQID 1094 + L D ++ + G V D + L+ T +V D++ + +R L I L R +D Sbjct: 1065 YEANAAELAVDTVIQIRGTVDVRDETVSLRATEMQVADLEN---EDSRPLVIVLPQRVLD 1121 Query: 1095 DQLLNRLRQSLEPHRSGTIPVHLYYQRADARAR-LRFGATWRVSPSDRLLNDLRGLIGSE 1153 L++L ++L H G V L AR L G +R+ L +++ L G Sbjct: 1122 QHRLDQLGRTLTNH-PGYCEVKLAVVDDQGAARVLTLGDRFRIKRDTSLFAEIKVLFGPH 1180 Query: 1154 QVE 1156 +E Sbjct: 1181 SIE 1183 >UniRef50_B0MXW1 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MXW1_9BACT Length = 1287 Score = 1185 bits (3067), Expect = 0.0, Method: Composition-based stats. Identities = 433/1234 (35%), Positives = 663/1234 (53%), Gaps = 113/1234 (9%) Query: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 P FVHL VH+ YS++DG A +PL+K+A ALGM ALAITD N+ G+ F+ AGIK Sbjct: 70 PDFVHLHVHTQYSILDGAAAISPLIKRAKALGMKALAITDHGNMYGVKNFHDVATDAGIK 129 Query: 64 PIVGADFNVQCDLLGDE-----LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDR 118 PI+G + V + + HL +LA N TGY NL ++S ++ G+ P ID+ Sbjct: 130 PILGCETYVVRNRFEKDKDEKAGDHLILLAKNLTGYHNLCKIVSYSFTEGF-YYKPRIDK 188 Query: 119 DWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPD- 177 L + +EGLI S G+V ++++R + ++ V +++ F D Y+LEL D Sbjct: 189 KLLEQYHEGLICCSACLGGEVPQAIMRNDMEEAEQVVRWFKSIFGDDYYLELQLHPSGDP 248 Query: 178 ---------EESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228 + A +EL+ G+ + +NDV FI + D AH+ + ++ G LDDP Sbjct: 249 RKDADVYENQLLVNKALLELSAKCGVKYICSNDVHFILAEDAVAHDHLICLNTGRDLDDP 308 Query: 229 KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCN-----------VTVRLGEYF 277 R R Y+ Q+Y++S EEM +LF D PEALA T+EIA + E+ Sbjct: 309 NRMR-YTFQEYLKSPEEMAQLFPDHPEALATTLEIADKVEEYKLTHAPLMPNFPPPPEFH 367 Query: 278 LPQFPTGD----------------------------MSTED------------YLVKRAK 297 +P + +++ YL Sbjct: 368 MPFEELRESLVKKIEDQEELARIDACHSVEELDAWAEESKERSEKLMTAKQFCYLKDLTY 427 Query: 298 EGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVP 357 +G R + E ++R+ EL I MGFPGYFLIV ++I+ +++ GV Sbjct: 428 KGAHLRYG---------AELSEEVEKRIRYELSTIEWMGFPGYFLIVWDYIRAAREMGVS 478 Query: 358 VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEH 417 VGPGRGS AGS+VAY LKIT++DPL++DLLFERFLNPER+S+PD DVDF + RD V+ + Sbjct: 479 VGPGRGSAAGSVVAYCLKITNIDPLKYDLLFERFLNPERISLPDVDVDFDEDGRDDVLHY 538 Query: 418 VADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMT------- 470 YG+ V+QI+TFGTMA K IRDV RV DR++KL+P Sbjct: 539 CVHKYGQKRVAQIVTFGTMAPKLAIRDVARVQKLALSESDRLAKLVPDKVTPDKKAGETP 598 Query: 471 LAKAFEAEPQLPEIYEA-DEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLY 529 ++ P+L E+ ++ ++ + A KLEG R G HA GV+I + +FAP+ Sbjct: 599 FDFCYKESPELAAERESPNQLIRNTLKYAEKLEGSIRQTGVHACGVIIGQDDLENFAPMA 658 Query: 530 CDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAI 589 ++ V +F+ +VE GL+K DFLGLRTL+II A+ + + +DI I Sbjct: 659 IAKDADLNVVEFEGKEVESVGLIKMDFLGLRTLSIIKDAVTNVKNVHGID----VDIDNI 714 Query: 590 PLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVD 649 PLDD ++++ R +TT +FQ ES GMK ++ L+P+ FED+IA+ AL+RPGP++ + Sbjct: 715 PLDDAPTYEVFSRGDTTGLFQFESPGMKKHLRNLKPNRFEDLIAMNALYRPGPME--YIP 772 Query: 650 NFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLR 709 NFI RKHG E ++Y ++ L TYGI +YQEQVM ++Q L+G+T G AD LR Sbjct: 773 NFIARKHGLEPVTYDIA-----DMEEYLSDTYGITVYQEQVMLLSQKLAGFTGGEADTLR 827 Query: 710 RAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSY 769 +AMGKK+ + K + F EG K G +A++ KI+ E FA Y FNKSHS YA ++Y Sbjct: 828 KAMGKKQRAVLDKMKPKFIEGCSKRGHDAKICEKIWGDWEAFASYAFNKSHSTCYAYIAY 887 Query: 770 QTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDG 829 QT +LKAHYP+EFMAA+++ ++ + +++ ++EC RMG+++L PDIN L +F N G Sbjct: 888 QTGYLKAHYPSEFMAALLSRNLSDIKQITLYMNECKRMGIRVLGPDINESLNNFSSNKAG 947 Query: 830 EIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFD 889 ++ +G+ A+KGVGE +E+I+ RNK G F++++D R + +NR+ LE + +G FD Sbjct: 948 DVRFGLAAVKGVGEAAVESIVAERNKNGKFKDIYDFFERVNYTAVNRKCLENIAYAGGFD 1007 Query: 890 RL-GPHRAALM----------NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSY 938 + G HR + ++ + + Q +FG + Sbjct: 1008 SISGFHRCKFFGTDLRDSSSTTFIEQLVRYGQRFQSEKDNAQQSLFGGGEGVVDIQHPVI 1067 Query: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTE--RGKVITA 996 +CQ W L ERE +GLYL+ HP++ Y I R + +L D+ E RG+ I Sbjct: 1068 PACQDWSTLETLGKEREMIGLYLSAHPLDDYA-VIIRNMCKTQLSDLDNLESLRGQEIAV 1126 Query: 997 AGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSF 1056 AG+V+A + +VTK G G TL+D +G E LF+ + +++ L D L + G+V Sbjct: 1127 AGMVIATQNLVTKTGKPWGKFTLEDYNGTHEFALFSKDYENFRKYLFNDYFLFIRGKVQP 1186 Query: 1057 DDFSG-GLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTI-P 1114 ++ L+ ++ + E R+ + + I L I +++ L ++ T Sbjct: 1187 KPYNDKELEFKITSMVQLSEMRDTMIKEMYIQLAIEDITREMIEELTHRIKESEGSTTLR 1246 Query: 1115 VHLYYQRADARARLRFGATWRVSPSDRLLNDLRG 1148 V++Y + A + F +VS + L++ L Sbjct: 1247 VNVYDRDAQVSVNM-FSKRHKVSLTSNLVSFLED 1279 >UniRef50_C8WER6 DNA polymerase III, alpha subunit n=10 Tax=Alphaproteobacteria RepID=C8WER6_ZYMMN Length = 1174 Score = 1180 bits (3052), Expect = 0.0, Method: Composition-based stats. Identities = 465/1184 (39%), Positives = 664/1184 (56%), Gaps = 53/1184 (4%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M FV LR+ S ++M++G + + + A +G PA I D L G++ F +G Sbjct: 1 MPYTPFVPLRIFSGFTMLEGAIEPKDITQHAKKMGFPAAGICDRNGLYGVMTFSDSGKKD 60 Query: 61 GIKPIVGADFNVQCD-------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 G++PI+G+ V ++ L + A + GY NL L+S A+ Sbjct: 61 GVQPIIGSLLAVARPLRGGEASGQELKIDWLPLYAQDEDGYNNLCALVSHAHLGRPLELP 120 Query: 114 PIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRT 173 P + ++L + ++GL+ L+GG+ G + R L + + + ++ FPDR ++EL R Sbjct: 121 PHVSMEFLEQHSQGLLALTGGKEGALARLLAEEQQSEAEAYLTLLQKIFPDRLYIELSRR 180 Query: 174 GRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRN 233 EE+ ++LA R +P+VATN V F+++ AH+ + I D +D P R R+ Sbjct: 181 SEEIEEAAEEGLIDLAYDRDIPLVATNPVCFLEADFHPAHDAMLCIADSAYVDSPDR-RH 239 Query: 234 YSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLV 293 SP+ +M+S EEM LF DIPEA+ N++ IA+RC V + + LP L Sbjct: 240 SSPEAWMKSGEEMARLFEDIPEAIQNSLVIAQRCAVAAPVRKPILPSLAGDREGETLMLR 299 Query: 294 KRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKD 353 K A GLE RLA + R Y+ERL+ EL +I MGFPGYFLIV +FI+W+K Sbjct: 300 KDAWAGLEARLAAM-----TTPVDRKAYEERLQYELNIIENMGFPGYFLIVADFIKWAKS 354 Query: 354 NGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQ 413 N +PVGPGRGSGAGS+VA+AL IT+LDPL LLFERFLNPERVSMPDFD+DFC +R + Sbjct: 355 NQIPVGPGRGSGAGSVVAWALTITNLDPLRLGLLFERFLNPERVSMPDFDIDFCETRRSE 414 Query: 414 VIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP--DPGMTL 471 VI +V YG D V+QIITFG M A+AV++D GRVL YG VDR++KL+P TL Sbjct: 415 VISYVQHKYGLDHVAQIITFGRMKARAVLKDTGRVLQMSYGQVDRLAKLVPSQASDPWTL 474 Query: 472 AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCD 531 +A P++ YE +E+V L+D+A KLEG+ R++ HA GVVI + PLY D Sbjct: 475 DRALNGVPEIASAYENEEDVHRLLDLAMKLEGLPRHSSTHAAGVVIGDRPLHQLVPLYRD 534 Query: 532 EEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPL 591 PVTQFD VE GLVKFDFLGL+TL+++N A++M+ R +D+ IPL Sbjct: 535 PRSDFPVTQFDMKYVEKTGLVKFDFLGLKTLSVLNKAVQMLKARG-----VEVDLDHIPL 589 Query: 592 DDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNF 651 DD+ F++L++ +T VFQLES GM+ + ++P FED+IALVAL+RPGP+ + +F Sbjct: 590 DDEAVFELLKQGDTVGVFQLESEGMRRTLAAVKPTRFEDIIALVALYRPGPMD--NIPSF 647 Query: 652 IDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRA 711 RK+G EEI YP H L+PVL+ TYGII+YQEQVMQ AQVL+GY+LG AD+LRRA Sbjct: 648 GARKNGGEEIVYP-----HPLLEPVLKETYGIIVYQEQVMQAAQVLAGYSLGEADLLRRA 702 Query: 712 MGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQT 771 MGKK EM QRS F EG++K+ I A ++FDL++KFAGYGFNKSH+AAYALV+YQT Sbjct: 703 MGKKIQSEMDAQRSRFVEGSKKHDITENQANQLFDLIDKFAGYGFNKSHAAAYALVAYQT 762 Query: 772 LWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEI 831 WLKAHY AEF AA M DM T+K+ VD+ R GL+ LPPDIN F V DG + Sbjct: 763 AWLKAHYRAEFYAAAMCFDMALTDKLQVFVDDMRRSGLRYLPPDINRSQSDFTVE-DGCV 821 Query: 832 VYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRL 891 Y +GA+KGVGE ++ I + R K G F+ L D R + + LNRR LE L +GAFD L Sbjct: 822 RYALGALKGVGEKAMDDICQEREKNGAFKSLDDFANRINPEHLNRRQLESLASAGAFDSL 881 Query: 892 GPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLD 951 G R A+ S + A + GQ +FG+ EE + W ++ Sbjct: 882 GVDRCAVKQSSEMIIGTAANIHRMRKSGQGGLFGM--EEMAMPSIKLPEDKIWSLTERMN 939 Query: 952 GERETLGLYLTGHPINQYLKEIERYVGGVRL-------------KDMHPTERGKVI--TA 996 E+E G + + HPI+ Y + R + R K I Sbjct: 940 AEKEAFGFFFSSHPIDNYRSLLSGLRIRSRADINRLAPPSYPQDDENPQDYRKKRIATQM 999 Query: 997 AGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDK-YQQLLEKDRILIVSGQVS 1055 A ++ R + RG R + D SG+ F + K +Q ++ +++ ++ Sbjct: 1000 AAMIEDVRWRDSARGRRYMMVAASDASGQFFASCFDEKATKDLEQAAKEKACVLMDVELD 1059 Query: 1056 FDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPV 1115 + +++ R + + E A + + +T + + L L + + +R G + Sbjct: 1060 WRPGDEAPRVSIRAI----QLCENLAPSVRLKMTVATGEAEALPALSELVNRYRGGQGEL 1115 Query: 1116 HLYYQRADA-RARLRFGATWRVSPSDRLLNDLRGLIGSEQVELE 1158 ++ D G + + S L ++ L G + V+L+ Sbjct: 1116 YIRALLPDGASTDFLVGRHYIL--SAELKAKIKRLSGIQAVDLK 1157 >UniRef50_Q9Z618 DNA polymerase III subunit alpha n=43 Tax=Actinobacteridae RepID=DPO3A_STRCO Length = 1179 Score = 1178 bits (3049), Expect = 0.0, Method: Composition-based stats. Identities = 414/1192 (34%), Positives = 637/1192 (53%), Gaps = 58/1192 (4%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS+P F HL VH+ YS++DG A+ + +GM +A++D NL G F+ + A Sbjct: 1 MSKPPFTHLHVHTQYSLLDGAARLKDMFDACNEMGMSHIAMSDHGNLHGAYDFFHSAKKA 60 Query: 61 GIKPIVGADFNVQCDLLGDE--------------------LTHLTVLAANNTGYQNLTLL 100 G+ PI+G + V + ++ TH T+ A N+ G NL L Sbjct: 61 GVTPIIGIEAYVAPESRRNKRKIQWGQPHQKRDDVSGSGGYTHKTMWATNSKGLHNLFRL 120 Query: 101 ISKAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEE 160 S AY G+ P +D++ + + +EG++ +G G+V L G+ + A Y++ Sbjct: 121 SSDAYAEGWLQKWPRMDKETISQWSEGIVASTGCPSGEVQTRLRLGHFDEALKAAADYQD 180 Query: 161 HFP-DRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAI 219 F DRYFLEL+ G E +E+ G+P + TND + + + AH+ + I Sbjct: 181 IFGKDRYFLELMDHGIEIEHRVRDGLLEIGRKLGIPPLVTNDSHYTYAHEATAHDALLCI 240 Query: 220 HDGFTLDDPKRPRNYSPQQYMRSEEEMCEL--FADIPEALANTVEIAKRCNVTVRLGEY- 276 G L DP R R Y++S +EM + E ANT IA+ + T + Sbjct: 241 QTGKNLSDPDRFRFDGTGYYLKSTDEMYAIDSSDAWQEGCANTRLIAEMIDTTGMFEKRD 300 Query: 277 FLPQFPTGDMSTE-DYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQM 335 +P+F + TE + + + G+E R P++ ++ E E+ VI QM Sbjct: 301 LMPKFDIPEGFTEITWFQEEVRRGMERRFPGGVPEDR---------QKQAEYEMDVIIQM 351 Query: 336 GFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPE 395 GFPGYFL+V +FI W+K+ G+ VGPGRGS AGS+VAYA+ ITDLDP+ L+FERFLNPE Sbjct: 352 GFPGYFLVVADFIMWAKNQGIAVGPGRGSAAGSIVAYAMGITDLDPIPHGLIFERFLNPE 411 Query: 396 RVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGF 455 RVSMPD D+DF +R +VI +V + YG D V+ I T+G + AK I+D RVLG+PY Sbjct: 412 RVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAM 471 Query: 456 VDRISKLIPPD---PGMTLAKA-------FEAEPQLPEIYEADEEVKALIDMARKLEGVT 505 DR++K +P D G+ L + ++ +YE++ +VK +ID A+ +EG+ Sbjct: 472 GDRLTKAMPADVLGKGIDLNGITDPTHPRYSEAGEIRSMYESEPDVKKVIDTAKGVEGLV 531 Query: 506 RNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTII 565 R G HA GV+++ I D AP++ +TQ+D E GL+K DFLGLR LTI+ Sbjct: 532 RQMGVHAAGVIMSSEPIVDHAPIWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNLTIM 591 Query: 566 NWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQP 625 + A++M+ + + + +F++LQR +T VFQ + M+ L++ ++P Sbjct: 592 DDAVKMVKSNKGIDLDLLSLPLDD----PTTFELLQRGDTLGVFQFDGGPMRSLLRLMKP 647 Query: 626 DCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIIL 685 D FED+ A+ AL+RPGP+ N+ RK+G +EI+ P + E L+ VL TYG+I+ Sbjct: 648 DNFEDISAVSALYRPGPMGMDSHTNYALRKNGLQEIT-PIHKELEEPLQEVLAVTYGLIV 706 Query: 686 YQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIF 745 YQEQV + AQ+++GY+LG AD+LRR MGKKKP+E+AK +F GA KNG + E ++ Sbjct: 707 YQEQVQKAAQIIAGYSLGEADILRRVMGKKKPDELAKNFVLFQAGARKNGYSDEAIQALW 766 Query: 746 DLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECW 805 D++ FAGY FNK+HSAAY LVSY T +LKA+YPAE+MAA++T+ D+ +K ++EC Sbjct: 767 DVLVPFAGYAFNKAHSAAYGLVSYWTGYLKANYPAEYMAALLTSVKDDKDKSAVYLNECR 826 Query: 806 RMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDL 865 RMG+K+LPP++N + +F D I++G+ A++ VG +E+II+ R G + D Sbjct: 827 RMGIKVLPPNVNESMSNFAAQGDDVILFGLSAVRNVGTNVVESIIKCRKAKGKYASFPDY 886 Query: 866 CARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFG 925 + + N+R E LI +GAFD +G R L + + EA GQ D+FG Sbjct: 887 LDKVEAVVCNKRTTESLIKAGAFDEMGHTRKGLTAQYEPMIDNVVAVKRKEAEGQFDLFG 946 Query: 926 VLAEEPEQIEQSYASC----QPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVR 981 + +E W + +L ERE LGLY++ HP+ + Sbjct: 947 GMGDEQSDEPGFGLDVVFGEDEWDKTYLLAQEREMLGLYVSDHPLFGLEHVLSDKADAGI 1006 Query: 982 LK-DMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQ 1040 + G V+T G++ + +TK+GN I T++D +G LE M F Sbjct: 1007 SQLTGGDFGDGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSLECMFFPATYQLVST 1066 Query: 1041 LLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNR 1100 L +D ++ V G++ D ++ A E+M D + + +++ +I +++R Sbjct: 1067 QLVEDAVVFVKGRL--DKREDVPRLVAMELMIPDLSNAGTNAPVVLTIPATRITPPMVSR 1124 Query: 1101 LRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGS 1152 L + L H G V + Q LR RV P L DL+ L+G Sbjct: 1125 LGEILT-HHRGDSEVRIKLQGPTKTTVLRLDRH-RVKPDPALFGDLKVLLGP 1174 >UniRef50_C4F7F9 Putative uncharacterized protein n=2 Tax=Collinsella RepID=C4F7F9_9ACTN Length = 1272 Score = 1178 bits (3047), Expect = 0.0, Method: Composition-based stats. Identities = 425/1277 (33%), Positives = 623/1277 (48%), Gaps = 147/1277 (11%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNL--------------CGLV 51 FVHL H+ YSM+DG + +V +A LGMPA+AITD + G Sbjct: 8 FVHLHNHTVYSMLDGATRIKDMVSRAVELGMPAVAITDHGYMYGVPELGLACDAVNHGTP 67 Query: 52 K---------FYGAGHGAG-------------------------------------IKPI 65 + F G IKPI Sbjct: 68 EYKVWSHDKSFLEKGRRDELECPDQESDPRGYEQHMKDLAMWDEKGNIDELKPPLVIKPI 127 Query: 66 VGADFNVQCD-----LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 G + D EL H+ + A N GY NL +S+A +G+ P + D Sbjct: 128 FGCEVYFTPDETLARDRKPELYHMVLFAQNEKGYVNLMQTVSEAAVQGF-YYKPRVTLDN 186 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRTGR---- 175 L EGLI S G + + + RG A E + + F P +++E+ G Sbjct: 187 LRRHREGLIASSACIAGIIPKCIDRGEMATAIEWAETFRDTFEPGNFYIEIQEHGITTDS 246 Query: 176 -PDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNY 234 +E +++AE G+ V+ATND ++ D ++ + I +DDP R R Sbjct: 247 GITDEELSRTLIQIAEQVGVKVIATNDFHYLTREDAPVQDVVMCIGTNSKIDDPNRIRME 306 Query: 235 SPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT--GDMSTEDYL 292 + YM++EEEM LF PEA NTVEIA++CNV + LP +P + E Sbjct: 307 GSEFYMKTEEEMRALFPYCPEACDNTVEIAEKCNVELDWDSIILPNYPLLDPGETHESQF 366 Query: 293 VKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSK 352 + +EGL +R D + R + ER E E +VI GF YFLIV E+++W+K Sbjct: 367 RRECEEGLAKRYGD---DWDGREIGGVDIRERFEFEYKVICDKGFAAYFLIVAEYVRWAK 423 Query: 353 DNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRD 412 NG+ VGPGRGS AG+LVAYA+ IT DPL L+FERFL+PER MPD D+DF E+R Sbjct: 424 QNGIGVGPGRGSAAGALVAYAMDITTFDPLSNGLMFERFLSPERTEMPDIDMDFDDERRL 483 Query: 413 QVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA 472 +VIEHV +YG + V+ +IT+ T+ AK I D RVL +P R+SK++ DPG+ L Sbjct: 484 EVIEHVRQLYGPEKVTHVITYSTIKAKQAINDAARVLDYPVYMGQRLSKMVSADPGVKLK 543 Query: 473 KAFEA--------EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524 + E P E Y+ DE+ + +ID A +EG+TR G HA V+I + + Sbjct: 544 QVLEKQPGKEDLYSPDFVEAYQKDEDARRIIDTALSIEGLTRGEGVHACAVLICRDAVNE 603 Query: 525 FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584 P D +G +TQ++ V GL+K DFLGLRTLT+I+ A I K + + Sbjct: 604 HVPTKLDTKGGVEITQYEGHTVADMGLLKMDFLGLRTLTVISKAKANIKKSFGID----I 659 Query: 585 DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644 D+ AIP DD K F+++ T VFQ+ES GM IK ++P ++ ++AL+AL+RPGPL Sbjct: 660 DVDAIPFDDPKIFELMSSGRTAGVFQVESAGMTATIKNMKPTEYKHVVALIALYRPGPLG 719 Query: 645 SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704 +GMV ++I+R +G+E D L +L TYG ++YQEQVM I+ + G++ G Sbjct: 720 AGMVTSYINRMNGKEPAVSYD-----PRLDGILGETYGTMVYQEQVMLISVEMCGFSKGE 774 Query: 705 AD-MLRRAMGKKKPEEM------------AKQRSVFAEGAEKNGINAELAMKIFDLVEKF 751 +D +R+ + KKK + + + GAEKNG +A KI+D V +F Sbjct: 775 SDSRIRKPVAKKKIKMLTDQVFKWSDGEDETIYDHWMNGAEKNGYKRSVAQKIWDDVLEF 834 Query: 752 AGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKI 811 A Y FNKSHSA YA++ QT WLKAHYP E+MAAV+T+ T+K+V V C G+ + Sbjct: 835 ASYAFNKSHSAGYAILVMQTAWLKAHYPNEYMAAVLTSYTGKTDKIVHYVSACRHDGIAV 894 Query: 812 LPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDT 871 LPPDIN F +G + +G+ I+GVGEG +AIIE R KGG F+ L D R D+ Sbjct: 895 LPPDINESGTEFTATPEG-VRFGLAGIRGVGEGVTQAIIEEREKGGPFKNLHDFVERVDS 953 Query: 872 KKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGD-----ALKAADQHAKAEAIGQADMFGV 926 + NRRV+E LI GAFD G R LM+ + + AA + K A GQ +F V Sbjct: 954 SQANRRVIEALIKGGAFDSTGYPRRQLMHFVDRDNPENIIDAAVKRQKDRAAGQTSLFDV 1013 Query: 927 LAEEPE---QIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYV------ 977 + ++ Q W + L E+E LG+Y++ HP+ Y + + Sbjct: 1014 FGDVEGSGFEVIVPEPDGQEWDRHMKLSFEKEVLGIYVSDHPLRPYEYALAKAREFTLSQ 1073 Query: 978 --------GGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVM 1029 G GK AG+V VTK G+ + I L+D G V+ Sbjct: 1074 IDTGFETMGPTGNAVNQEIPEGKPYWWAGMVSGVGKRVTKNGDPMAIVQLEDMEGEATVV 1133 Query: 1030 LFTDALDKYQQLLEK-----------DRILIVSGQVSFDDFSGGLKMTAREVMDI-DEAR 1077 +F + + L D + V G++ D ++ A+E+ + Sbjct: 1134 VFPKTYKQCEGYLYGEVDPETGAQLSDAFIRVKGKLERSDRGD--QIIAQEIEPLVLSEE 1191 Query: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVS 1137 + I + + + RL L + G V L+ ++AD +R RV+ Sbjct: 1192 SNRPKVFEIMVPSSRFSQSNMARLATVLNTNPGGD-RVELFIEQADG-QTMRAEIPTRVN 1249 Query: 1138 P-SDRLLNDLRGLIGSE 1153 S L+ +++G++G++ Sbjct: 1250 ARSIPLIAEVKGIVGNK 1266 >UniRef50_B1XVK6 DNA polymerase III, alpha subunit n=21 Tax=Burkholderiales RepID=B1XVK6_POLNS Length = 1205 Score = 1177 bits (3045), Expect = 0.0, Method: Composition-based stats. Identities = 550/1221 (45%), Positives = 767/1221 (62%), Gaps = 79/1221 (6%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M+ PRFVHLRVHS++S+ DG+ + V A GM ALAITD +NL GLV+FY A + Sbjct: 1 MALPRFVHLRVHSEFSITDGVVRIDDAVAAAVKDGMGALAITDLSNLFGLVRFYTAARSS 60 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 GIKPI GAD + D+ L +L N++GY NL L+S+A +D W Sbjct: 61 GIKPITGADVWISNPQDPDQPHRLLLLVQNHSGYLNLCELLSRASLDNQSRGRAEVDSAW 120 Query: 121 LIELNE-------------GLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYF 167 E GLI LSG RMG+VG +LL G + YE+ FP ++ Sbjct: 121 FSEPAAKTEDKAAKRTLPYGLIALSGARMGEVGAALLAGQADQAKIVARRYEKLFPKSFY 180 Query: 168 LELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDD 227 +E+ R G P +E +L A LA LPVVAT+ V+F+ SDF AHE RV I +G L + Sbjct: 181 IEVQRGGNPQDERHLQLACHLASELDLPVVATHPVQFMQRSDFTAHEARVCIAEGELLGN 240 Query: 228 PKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM- 286 P+R + ++ +QY ++EEM + FAD+P ALAN+VEIAKRCN+++ LG+ LP FPT Sbjct: 241 PRRTKKFNEEQYFLTQEEMEKRFADLPVALANSVEIAKRCNLSLVLGQPRLPDFPTPPGI 300 Query: 287 STEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVME 346 + ++YL+ +++ GLE + FPD EER K Y ERL E++ I+QMGFPGYFLIV + Sbjct: 301 TLDEYLLAQSEVGLERHMERNFPDPEERAKEMARYHERLVFEVKTISQMGFPGYFLIVAD 360 Query: 347 FIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 406 FI W+K+NGVPVGPGRGSGAGSLVAY+L ITDLDPL ++LLFERFLNPERVSMPDFD+DF Sbjct: 361 FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 420 Query: 407 CMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPD 466 C RD+VI++V D YG+DAVSQI TFGTMAA+A IRDVGRVL Y FVD I+KL+P Sbjct: 421 CQHGRDRVIQYVKDKYGKDAVSQIATFGTMAARAAIRDVGRVLEQGYNFVDGIAKLVPNK 480 Query: 467 PG--MTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524 PG MT+ A + E QL E + ++EV+ L+ +A++LEG+TRN G HAGGV+IAP ++TD Sbjct: 481 PGQYMTIEMAKKKEKQLAEREKNEDEVRQLLSLAQQLEGMTRNVGMHAGGVLIAPGRLTD 540 Query: 525 FAPLY----CDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNG 580 F PLY D++ ++QFDK DVE GLVKFDFLGL TLTI+ A I A Sbjct: 541 FCPLYTQESKDQDSSSVISQFDKDDVEAVGLVKFDFLGLTTLTILAAAERWIKALHADR- 599 Query: 581 EPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRP 640 +I IPLDD+K+FD+L+R+ T AVFQLESRGM+ +++ +PD FED+IALVAL+RP Sbjct: 600 -RDWNIGEIPLDDEKAFDVLKRANTVAVFQLESRGMQGMLREAKPDRFEDIIALVALYRP 658 Query: 641 GPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGY 700 GP+ + +FI+RKHGR+++ YPD ++PVL TYGI++YQEQVMQ+AQ++ GY Sbjct: 659 GPMDL--IPDFIERKHGRQKVEYPD-----PRIEPVLRETYGIMVYQEQVMQMAQMIGGY 711 Query: 701 TLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSH 760 +LGGADMLRRAMGKKKPEEMA+ R +F++GA+ GI+ A +I+DL+E+FAGYGFNKSH Sbjct: 712 SLGGADMLRRAMGKKKPEEMAQHRKIFSDGAKAGGISEGKANEIYDLMERFAGYGFNKSH 771 Query: 761 SAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGL 820 +AAYAL++YQT WLKA+YPAEFMAA ++ MD+T+KV L D+C +++ PDIN+G+ Sbjct: 772 AAAYALLAYQTAWLKAYYPAEFMAANLSLAMDDTDKVKILYDDCLVNNIRVFSPDINTGV 831 Query: 821 YHFHVNDDGE---------IVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDT 871 Y F + + YG+GA++G GE IE+I++AR GG F++LFD CAR D Sbjct: 832 YEFTPLRAPDAAPDSPISHVRYGLGAVRGTGEAAIESIVKARETGGPFKDLFDFCARVDR 891 Query: 872 KKLNRRVLEKLIMSGAFDRLGPH-----------RAALMNSLGDALKAADQHAKAEAIGQ 920 +++NRR +E L+ +GAFD L R+ L+ SL +I Q Sbjct: 892 RQVNRRAIEALMRAGAFDDLYRDSVPAGGNLYDIRSTLLASLAR--AIEAAEQAEASIYQ 949 Query: 921 ADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGV 980 +F V EE + W E+ L E+ LGL LTGH + Y E ++ Sbjct: 950 VSLFEVAGEENRHL-PELVREPVWSEKKRLQEEKTALGLCLTGHMFDAYRDETSHFIR-- 1006 Query: 981 RLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQ 1040 + + GK AG++ +AR++ +RG R+ I T+DD + LEV L+++ + + Sbjct: 1007 --QPLSKVTEGKDQLIAGIITSARMLTGQRG-RMMIATIDDGTAALEVTLYSEVYEPNRS 1063 Query: 1041 LLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNR 1100 L++D +L+ V+ D FSGG+++ + VMDI AR ++A + + + + L ++ Sbjct: 1064 WLKEDELLVAKVNVTPDKFSGGMRIVSEAVMDITGARMRFAHNVHVCIDNVIDIKMLRSQ 1123 Query: 1101 LRQSLEPHR-------------SGTIP------VHLYYQRADARARLRFGATWRVSPSDR 1141 + L +R G+ + + ++F R+ P D Sbjct: 1124 INPYLMANRVRDLKLGASAPAAPGSNDGMKGLMLTAAVTTSGGACLMQFPEELRIYPDDA 1183 Query: 1142 LLNDLRGLIGSEQ---VELEF 1159 L+ L ++ S+Q V++++ Sbjct: 1184 CLHGLNQILASKQKDPVQVQY 1204 >UniRef50_P63978 DNA polymerase III subunit alpha n=117 Tax=root RepID=DPO3A_MYCBO Length = 1184 Score = 1171 bits (3030), Expect = 0.0, Method: Composition-based stats. Identities = 419/1189 (35%), Positives = 637/1189 (53%), Gaps = 59/1189 (4%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL H++YSM+DG AK P++ + LGMPA+ +TD N+ G +FY + AGIKPI Sbjct: 10 FVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAGIKPI 69 Query: 66 VGADFNVQCDLLGD--------------------ELTHLTVLAANNTGYQNLTLLISKAY 105 +G + + D THLT++A N TG +NL L S A Sbjct: 70 IGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLSSHAS 129 Query: 106 QRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEH-FPD 164 G + +D + + E EG+I+ +G G+V L G E A + E PD Sbjct: 130 FEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWREIVGPD 189 Query: 165 RYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFT 224 YFLEL+ G E +E+ A +P +ATND ++ HE + + G T Sbjct: 190 NYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLCVQTGKT 249 Query: 225 LDDPKRPRNYSPQQYMRSEEEMCELFAD-IPEALANTVEIAKRCNVTVRLGEYF--LPQF 281 L DP R + Y++S EM +++ D +P A +T+ IA+R + +P F Sbjct: 250 LSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWTPRDRMPVF 309 Query: 282 PTGDMST-EDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGY 340 P D +L GL R PD Y ER E+ VI GFP Y Sbjct: 310 PVPDGHDQASWLRHEVDAGLRRRFPAGPPDG---------YRERAAYEIDVICSKGFPSY 360 Query: 341 FLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMP 400 FLIV + I +++ G+ VGPGRGS AGSLVAYAL ITD+DP+ LLFERFLNPER SMP Sbjct: 361 FLIVADLISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMP 420 Query: 401 DFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRV-LGHP-YGFVDR 458 D D+DF +R +++ + AD +G D V+Q+ITFGT+ KA ++D R+ G P + DR Sbjct: 421 DIDIDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADR 480 Query: 459 ISKLIPPD--------PGMT--LAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNA 508 I+K +PP G+T + ++ ++ + E D +V+ + AR LEG+ RNA Sbjct: 481 ITKALPPAIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNA 540 Query: 509 GKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWA 568 G HA V+++ +T+ PL+ + +T +D E GL+K DFLGLR LTII A Sbjct: 541 GVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDA 600 Query: 569 LEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCF 628 ++ + R + LD+ ++PLDDK ++++L R +T VFQL+ M+DL++R+QP F Sbjct: 601 IDNVRANRGID----LDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGF 656 Query: 629 EDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQE 688 ED++A++AL+RPGP+ +++ DRK+ R+ I + + L+ +L TYG+I+YQE Sbjct: 657 EDVVAVIALYRPGPMGMNAHNDYADRKNNRQAIKPIHPELEEP-LREILAETYGLIVYQE 715 Query: 689 QVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLV 748 Q+M+IAQ ++ Y+L AD+LR+AMGKKK E + K+ F++G + NG + ++D + Sbjct: 716 QIMRIAQKVASYSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTI 775 Query: 749 EKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMG 808 FA Y FNKSH+A Y +VSY T +LKA+YPAE+MA ++T+ D+ +K + +C ++G Sbjct: 776 LPFADYAFNKSHAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLG 835 Query: 809 LKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCAR 868 + +LPPD+N +F +I YG+GA++ VG + ++++ RN G F + D + Sbjct: 836 ITVLPPDVNESGLNFASVGQ-DIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNK 894 Query: 869 TDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLA 928 D N++V E LI +GAFD LG R L DA+ + KAEA+GQ D+FG Sbjct: 895 IDISACNKKVTESLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSND 954 Query: 929 EEPEQIEQSY---ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDM 985 + + + W ++ L ERE LGLY++GHP+N + V + Sbjct: 955 DGTGTADPVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAIL 1014 Query: 986 H-PTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEK 1044 + G++ + V K G L+D +G +EVM F Y + Sbjct: 1015 DGDVPNDAQVRVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTYSSYGADIVD 1074 Query: 1045 DRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQS 1104 D +++V+ +V+ D + + A ++ D + + R LA+SL RQ ++ L+Q Sbjct: 1075 DAVVLVNAKVAVRD--DRIALIANDLTVPDFSNAEVERPLAVSLPTRQCTFDKVSALKQV 1132 Query: 1105 LEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSE 1153 L H GT VHL D L + RV+PS L+ DL+ L+G Sbjct: 1133 LARH-PGTSQVHLRLISGDRITTLALDQSLRVTPSPALMGDLKELLGPG 1180 >UniRef50_Q4FSI0 DNA polymerase III, alpha subunit n=6 Tax=Bacteria RepID=Q4FSI0_PSYA2 Length = 1247 Score = 1165 bits (3013), Expect = 0.0, Method: Composition-based stats. Identities = 548/1136 (48%), Positives = 748/1136 (65%), Gaps = 48/1136 (4%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL +HS+YS+ D + + PLVK AAA ALA+TD +NL VKFY A GAGIKPI Sbjct: 3 FVHLGIHSEYSITDSIVRIKPLVKAAAADNQRALALTDLSNLYATVKFYRACLGAGIKPI 62 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY----GAAGPIIDRDWL 121 +G++ ++ +E T LT+LA +N GYQN+T ++S + G P+I R + Sbjct: 63 IGSEV-----IMENEDTRLTLLAMDNEGYQNITRIVSLGFTEGRADPVNHGTPVIKRSHI 117 Query: 122 IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181 +E G+I+L DVG++L+ DE + ++ F DR + + RT R E+++ Sbjct: 118 LEHGAGVIVLF-TEKSDVGQALVGSMPEKADELITEWQASFDDRLYFAIKRTNRTGEDAF 176 Query: 182 LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241 + AA+ +P++A NDVRF++ DFDAHE RV I + L D RP+ YS QY++ Sbjct: 177 IKAAIHSGAKHHIPIIAHNDVRFLEQDDFDAHEARVCIAGSYVLADQNRPQTYSDAQYLK 236 Query: 242 SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKRAKEGL 300 ++ +M +LFADIP+ + NT+ +A RCNVT+ LG LP+FP + +TE + ++ GL Sbjct: 237 TQAQMQQLFADIPQVIDNTLRLATRCNVTLTLGINVLPEFPVPEGETTESFFRLESQRGL 296 Query: 301 EERLAFLFP---DEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVP 357 E RL LFP + R YDERLE EL+VI MGFPGYFLIVM+FI+W+K NGVP Sbjct: 297 ENRLDKLFPVDARSDHWSDIRQRYDERLEYELKVILSMGFPGYFLIVMDFIRWAKANGVP 356 Query: 358 VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEH 417 VGPGRGSGAGSLVAYAL ITDLDP+ +DLLFERFLNPERVSMPDFD+DFC+E RD+VI++ Sbjct: 357 VGPGRGSGAGSLVAYALNITDLDPIHYDLLFERFLNPERVSMPDFDIDFCIEGRDRVIDY 416 Query: 418 VADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEA 477 VA YGR+AVSQIITFGTMAAKAV+RDV R Y ++SKLIP PG+TL++A E Sbjct: 417 VAQTYGREAVSQIITFGTMAAKAVVRDVARAQSKSYFLASKMSKLIPKTPGITLSQALEQ 476 Query: 478 EPQLPEIYEAD-----EEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDE 532 EPQL ++ E+ + +MA KLEG+ RN GKHAGGV+IAP KITDF+ +YCD+ Sbjct: 477 EPQLKDLISNPDNMDYEDAIEVWEMAIKLEGICRNVGKHAGGVLIAPHKITDFSAIYCDD 536 Query: 533 EGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLD 592 EG V+QFDK DVE GLVKFDFLGLR LT+I+ A+E INKRRAK G+ L + +PLD Sbjct: 537 EGHR-VSQFDKDDVEAVGLVKFDFLGLRNLTVISAAVENINKRRAKEGKEALVLEDLPLD 595 Query: 593 DKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFI 652 D K++ +LQ ++TTAVFQLES GMK + +LQP ED+IA+ AL+RPGPL +GMV+ +I Sbjct: 596 DAKAYKLLQDAKTTAVFQLESMGMKKYLAKLQPTNIEDVIAMCALYRPGPLDAGMVEMYI 655 Query: 653 DRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAM 712 DRKHGREE+ Y H +L+P+LE T G+I+YQEQVMQI+QV++GY+LGGADMLRRAM Sbjct: 656 DRKHGREEVIY-----DHPNLEPILENTNGVIVYQEQVMQISQVMAGYSLGGADMLRRAM 710 Query: 713 GKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTL 772 GKKKPEEMAKQR +F GA GI+ + +FDL+EKFAGYGFN+SHSAAY +++YQT Sbjct: 711 GKKKPEEMAKQRDIFVTGATAQGIDEATSGGVFDLMEKFAGYGFNRSHSAAYGVLAYQTA 770 Query: 773 WLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFHVNDDGEI 831 +LK +YPAEFMAAV+T+DM+NT+ VV +++C L ++ P +N +HF + I Sbjct: 771 YLKQYYPAEFMAAVLTSDMNNTDNVVFFINDCRENFALTVVNPSVNRSEWHFVADTPTNI 830 Query: 832 VYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRL 891 +YG+GAIKGVGEG +E+I+EAR + G F++L+D C R D KK+N+R LE LI +G FD Sbjct: 831 IYGLGAIKGVGEGAVESIVEARRREGPFKDLYDFCRRVDIKKVNKRTLEGLINAGCFDDF 890 Query: 892 GPH-------------RAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSY 938 R ALM+ L A++AA+Q + IG D+FG + Sbjct: 891 AATLRPDLPSDEAYEIRGALMSQLPSAVQAAEQDRQNREIGMMDLFGEMDGVVAAPPLVM 950 Query: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998 W ++ L E+ TLGLYLTGHPI++Y E++RY G RL + T AG Sbjct: 951 TPELIWGDKHRLKAEKNTLGLYLTGHPIDEYRDELKRYTSGARLDKLADTGYNGSCYFAG 1010 Query: 999 LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDD 1058 L++ T+ + TLDD + RLEV + + ++ + L+ D ++I+ G + + Sbjct: 1011 LIIDIANFGTRN-----VITLDDGTSRLEVSCYAERFNRVKDQLKIDEVVIIKGSI--RE 1063 Query: 1059 FSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIP 1114 G L M + +AR ++ + ++I + I+ LL ++ L+ ++ IP Sbjct: 1064 RDGRLFARLDNAMSMVDARLRWLKKISIKVHGSDIN--LLTCMQPLLKSAQASIIP 1117 >UniRef50_B0TZK7 DNA-directed DNA polymerase n=16 Tax=Francisella RepID=B0TZK7_FRAP2 Length = 1159 Score = 1163 bits (3008), Expect = 0.0, Method: Composition-based stats. Identities = 483/1113 (43%), Positives = 698/1113 (62%), Gaps = 21/1113 (1%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F HLR+H+ YS++D + L +A + A+A+TD NL VKFY G+KPI Sbjct: 2 FSHLRIHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALSNGVKPI 61 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRG-YGAAGPIIDRDWLIEL 124 G + + + L +LA NN GYQN+ L+SKAYQ + P+I +DWL + Sbjct: 62 FGVELKIDTEFGV---CDLVLLAENNQGYQNIVNLVSKAYQEADRFGSIPLIPKDWLKNI 118 Query: 125 N-EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRTGRPDEESYL 182 N +I L+GG+ G++G+++L + V+E ++ F D Y +E+ + +E Y Sbjct: 119 NLANVICLNGGQNGELGKAILAKDDIRVEEIISESIAIFGRDNYIIEIHKLEYENEGLYN 178 Query: 183 HAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRS 242 A+ELA L VATN F++S D+D HEIR I++ T+ D R ++ +QY++S Sbjct: 179 EKALELASKHNLIAVATNLTVFMESDDYDIHEIRACINEKTTILDESRKSKFTREQYLKS 238 Query: 243 EEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKRAKEGLE 301 +EM + F+++P L NT+ IAKRCNVT LG+ LP D + +Y K +GL+ Sbjct: 239 ADEMYQTFSELPVLLENTLAIAKRCNVTFDLGKPCLPTVDIPDGLTEREYFSKLCYQGLD 298 Query: 302 ERLAFLFPDE--EERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVG 359 +RLA + + ++ Y +RL+ E+ +I MGFPGYFLIV +FI+WSK+N +PVG Sbjct: 299 KRLAKILENRPVDKHEHIIKVYKDRLQREIDIICDMGFPGYFLIVEDFIRWSKENDIPVG 358 Query: 360 PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVA 419 PGRGSGAGSLVAY+L ITD+DPL + LLFERFLNPERVSMPDFD+DFC++ RD+VI++V Sbjct: 359 PGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDIDFCIQGRDRVIKYVE 418 Query: 420 DMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEP 479 YG+ +V QIIT+GTMAAK V+RDV RV+G +GF DRI+KLIP PG T K Sbjct: 419 QKYGKQSVGQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPETPGTTFKKILHEGE 478 Query: 480 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 539 L + +ADEEV +++ A+KLEG+ R+ GKHA G+VI+PT I+DFAP+YC+++G VT Sbjct: 479 PLYDEMQADEEVAEIVEKAQKLEGLPRSLGKHAAGIVISPTVISDFAPVYCEDKGGDIVT 538 Query: 540 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 599 QFDK DVE GLVKFDFLGL+ LTII A+ IN +R+ N E PLDI+ IPLDD+K+F + Sbjct: 539 QFDKGDVEDVGLVKFDFLGLKNLTIIKNAIASINAKRSAN-ETPLDISDIPLDDEKTFKL 597 Query: 600 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 659 LQ +T +FQLES+GM+ ++K L FE++IALVAL+RPGP++ + F+DRKHGR+ Sbjct: 598 LQAGKTIGIFQLESQGMQQIVKDLGTSNFEEIIALVALYRPGPME--NIPTFVDRKHGRK 655 Query: 660 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 719 + +Y H L+ VL TYGI +YQEQVMQ+AQ L+GYTLGGAD+LRRAMGKKKPEE Sbjct: 656 QTTY-----LHPLLEEVLRETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMGKKKPEE 710 Query: 720 MAKQRSVFAEGAEK-NGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778 M +QR +F EGA K + I A LA +IFD +E FAGYGFNKSH+AAYAL++YQT WLKAHY Sbjct: 711 MEQQRKIFKEGAAKYHNIEAGLADEIFDQMEAFAGYGFNKSHAAAYALIAYQTAWLKAHY 770 Query: 779 PAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAI 838 P E+MAA+M+ DM NT+++V + + MG+ +L P++N +Y G I+ G+GAI Sbjct: 771 PDEYMAALMSGDMGNTDQLVKFILDAKNMGITVLAPNVNKSVYDCIAASKGTILLGLGAI 830 Query: 839 KGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAAL 898 KG+G I++I+ R G F +FDL R D +K+N++ LE L +GA + +RA Sbjct: 831 KGLGGEAIKSILNEREASGEFSSIFDLTRRVDLRKVNKKALEALCFAGAIKDISKNRATA 890 Query: 899 MNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYAS--CQPWPEQVVLDGERET 956 NS+ A+K A + A GQ D+FG +E + + + W + +L E++ Sbjct: 891 FNSIEKAIKNAGYVNEMAAAGQNDLFGFTEQESDTDTELERECIVEEWNLRELLINEKKA 950 Query: 957 LGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG-LVVAARVMVTKRGNRIG 1015 LG+Y +GH I+ K P G + ++ TK G + Sbjct: 951 LGMYFSGHIIDDESHWRNHVSFSDLEKIQKPNMDGNSVRIIASMITPPARRKTKTGRVLY 1010 Query: 1016 ICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDE 1075 I +DD R + ++ D + ++ D +++V G+VS+D K++ +V I + Sbjct: 1011 IINIDDEFDRADCLVGEDVFAAVKDNIQVDDVVVVEGKVSYDKQRECNKLSVDKVQPISQ 1070 Query: 1076 AREKYARGLAISLTDRQIDDQLLNRLRQSLEPH 1108 ++ + ++L + ++ L ++ +L+ + Sbjct: 1071 YIDENFSKVELNLRSQNVNPTNLKKVLDNLKKN 1103 >UniRef50_B4S7C7 DNA polymerase III, alpha subunit n=11 Tax=Chlorobiaceae RepID=B4S7C7_PROA2 Length = 1190 Score = 1158 bits (2997), Expect = 0.0, Method: Composition-based stats. Identities = 419/1206 (34%), Positives = 649/1206 (53%), Gaps = 67/1206 (5%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS FVHL H+ YSM L GM ++A+TD++ + + + + A Sbjct: 1 MSNIDFVHLHTHTHYSMQSSPIFPKELFSACKKAGMESVAVTDYSAMFNMPELFSLASDA 60 Query: 61 GIKPIVGADFNVQCDLLGDELTH-----LTVLAANNTGYQNLTLLISKAYQRGYGAAGPI 115 G+K I+G++ + H L +L N GY+NL +L+S+A + G+ A P Sbjct: 61 GVKLIIGSEVYLLEQDAHHNGRHSVSPSLILLVKNEEGYKNLCILLSRAAREGFVNATPH 120 Query: 116 IDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGR 175 +D L E + GLI LSG G +GR+LL GN AFY + F D ++LEL R Sbjct: 121 VDSSLLKEYHAGLICLSGYYAGRIGRALLAGNRDEAASFTAFYHDIFGDDFYLELQRHFA 180 Query: 176 PDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYS 235 ++ + LAE G+ +VATN+V ++ D + VAI L + Sbjct: 181 TFDDQLNSDTIALAEQHGVQLVATNNVHYLQKKDAGRYRAMVAIRTKERLSSSNLQCLPN 240 Query: 236 PQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM--STEDYLV 293 + Y +S +EM LF++ L+NT IA +C+ E LP F + +YL Sbjct: 241 SEHYFKSSDEMASLFSNEHHELSNTAAIAAKCSYVFCQQEPRLPHFLLPEGFSDEAEYLR 300 Query: 294 KRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKD 353 EG E+ A E + + ++R+E EL VI MGF YFLIV + I S+ Sbjct: 301 HLTYEGAREKYADP----ESQGLTWQQVEDRIEKELGVIISMGFSSYFLIVSDLIAASRR 356 Query: 354 NGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQ 413 G VGPGRGS AGS++AY IT +DPL++ LLFERFLNPER+SMPD D+DF + + Sbjct: 357 LGYSVGPGRGSAAGSIIAYLTGITRIDPLKYKLLFERFLNPERLSMPDIDIDFTPVGKQR 416 Query: 414 VIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAK 473 V+++ D YG D+V++++ GT+ A+A IRD GRVL P VDR++KL+P PG TL + Sbjct: 417 VLDYTVDKYGDDSVAKVVAIGTLGARAAIRDAGRVLEVPLQEVDRLAKLVPSKPGTTLQQ 476 Query: 474 AFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLY---- 529 + +L E+ E+ + L+D A LEG RN HAG VVI + + PLY Sbjct: 477 GLDEVNELRELVESSSQNSTLMDYALALEGRARNVSMHAGAVVITDGPLEEQVPLYVSNK 536 Query: 530 -----------------------CDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIIN 566 + + K VTQFDK+ +E AGL+K D+LGL TL +I+ Sbjct: 537 IETEARKFADEYNEDELERGALKSNSDEKQVVTQFDKNWIETAGLLKIDYLGLETLAVID 596 Query: 567 WALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPD 626 L +I KR A +++ +P+D+KK+F + Q + +FQ ES+GM++ + +LQP Sbjct: 597 ETLHLIKKRHA----EVIELETVPMDNKKAFRIFQEGKMAGIFQFESQGMQNYMMQLQPT 652 Query: 627 CFEDMIALVALFRPGPLQS------GMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPT 680 D+IA+ AL+RPG L + VD F+DRKH RE I Y H L+ +L+ T Sbjct: 653 QIGDIIAMSALYRPGALNARVDPKRNAVDLFVDRKHNREPIDY-----MHPMLEEILKET 707 Query: 681 YGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAEL 740 YG+I+YQEQVMQI+QV+ G++L AD LR+AMGKKKPE M K ++ F EGA G++ +L Sbjct: 708 YGVIVYQEQVMQISQVMGGFSLAKADNLRKAMGKKKPEIMQKFKADFVEGAVNQGVHDKL 767 Query: 741 AMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGL 800 A +IFDL+ +FAGYGFNKSHSAAY +++Y T +LKAHYP EFM A++ +++ +T ++ L Sbjct: 768 ANRIFDLMAEFAGYGFNKSHSAAYGVLAYWTAYLKAHYPGEFMTAILNSEIGDTARMKHL 827 Query: 801 VDECWRMGLKILPPDINSGLYHFHVNDD---GEIVYGIGAIKGVGEGPIEAIIEAR-NKG 856 DE + ILPPDIN+ F ++D I G+ AIK VG A++ +R + Sbjct: 828 TDEARSFNISILPPDINTSDALFSIDDVDGLPAIRVGLSAIKQVG-NAARAVVTSRLRRK 886 Query: 857 GYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAE 916 + LFDL A D + +NR+ LE LI++GA D + P+RA L+ ++ A+K ++ Sbjct: 887 KEYVNLFDLTASVDLRAMNRKALECLILAGALDSIDPNRAKLIANIDKAIKFGQLQNRSV 946 Query: 917 AIGQADMF--GVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIE 974 +GQ F + + P P+ L E++ +G YL+ HP++ + ++ E Sbjct: 947 TLGQCGFFSDDNAGGMQDSLYPDMDPADPMPDSEKLQAEKKLVGFYLSRHPLDPFRRDWE 1006 Query: 975 RYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDA 1034 + D + + G+VV+ + ++GN++ ++D SG+ + +F Sbjct: 1007 AFANLHL--DARNVQPSRQYKIIGVVVSTKPHQDRKGNQMLFGVIEDFSGKADFTVFASV 1064 Query: 1035 LDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQ-I 1093 ++++ L++ D +++ + G LK+ RE++ + + RE + + + + Sbjct: 1065 YEQFRHLIKVDEAVMLVA--EAESSGGALKLLVREIVPVRKVRENCIDKVVLKINADDPL 1122 Query: 1094 DDQLLNRLRQSLEPHRSGT-IPVHLYYQRADARARLR-FGATWRVSPSDRLLNDLRGLIG 1151 D + L +R+ E H+ GT + + Q A+ LR F + SD L+ L ++G Sbjct: 1123 DVEKLAAVREVFETHKGGTAVDFEVKVQSAENIEMLRVFARATPIDASDETLSKLEKILG 1182 Query: 1152 SEQVEL 1157 + V + Sbjct: 1183 PDNVAI 1188 >UniRef50_Q160T2 DNA polymerase III, alpha subunit n=39 Tax=Rhodobacterales RepID=Q160T2_ROSDO Length = 1183 Score = 1153 bits (2983), Expect = 0.0, Method: Composition-based stats. Identities = 485/1208 (40%), Positives = 682/1208 (56%), Gaps = 79/1208 (6%) Query: 1 MS-EPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59 MS PRF+HLR HS+YS+++G + L GMPALA+TD N+ ++F A G Sbjct: 1 MSTHPRFIHLRTHSEYSLLEGALRLKKLPSMCRDAGMPALALTDKNNMFAALEFSVAMSG 60 Query: 60 AGIKPIVGADFNV-----QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGP 114 AG++PI+G +V Q + +LA + GY+NL L S Y G A P Sbjct: 61 AGVQPILGCQVDVAYVTAQPGERERAPAPVVLLAQSEAGYENLMRLNSCLYID-KGGALP 119 Query: 115 IIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRT- 173 + L G+I L+GG G VG+ L G + + F DR ++EL R Sbjct: 120 QVTLSELESNAGGIICLTGGPDGPVGQLLQLGQMPAAQALMDRLKAAFQDRLYIELQRHP 179 Query: 174 ---GRPDEESYLHA-AVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPK 229 G+P++E VE+A A LP+VATNDV F +S ++AH+ + I +G +D Sbjct: 180 GESGQPEKERLTERGFVEMAYAMDLPLVATNDVYFPNSDMYEAHDALICIAEGAYVDQQD 239 Query: 230 RPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTE 289 R + Q Y +S+ EM LFAD+PEA+ NTVEIAKRC + LP+F Sbjct: 240 DRRRLTNQHYFKSQSEMVALFADLPEAIENTVEIAKRCAFQAYRRDPILPKFA---DDEV 296 Query: 290 DYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQ 349 + L K+A GL+ RL + +Y +RL+ EL +I MGFPGYFLIV +FI+ Sbjct: 297 EELRKQAHAGLKARL-----EVIPHAASVEDYTKRLDFELGIIEGMGFPGYFLIVADFIK 351 Query: 350 WSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCME 409 W+K+ G+PVGPGRGSGAGSLVAYAL +TDLDPL ++LLFERFLNPERVSMPDFD+DFCM+ Sbjct: 352 WAKEQGIPVGPGRGSGAGSLVAYALTVTDLDPLRYNLLFERFLNPERVSMPDFDIDFCMD 411 Query: 410 KRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPD--P 467 +R++VI +V + YGRD V QIITFG + +KA +RD+GRVL PYG VDR+SK+IP + Sbjct: 412 RREEVIRYVQEKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSKMIPVEGVK 471 Query: 468 GMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAP 527 +++ KA EP+L E + +E V L++ +++EG+ RNA HA GVVI + P Sbjct: 472 PVSIEKALADEPRLREEAKNEEVVARLLNYGQQVEGLLRNASTHAAGVVIGDRPLDALVP 531 Query: 528 LYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMI-------------NK 574 LY D + P TQF+ VE AGLVKFDFLGL+TLT+I A+E I + Sbjct: 532 LYQDPRSEMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVEQIMASGRPLHIAADGTE 591 Query: 575 RRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIAL 634 DI AIPLDD++S+ + ++T AVFQ+ES GM D +KR++P C ED++AL Sbjct: 592 LYEPAPGTENDINAIPLDDERSYKLYASAKTVAVFQVESSGMMDALKRMKPTCIEDIVAL 651 Query: 635 VALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIA 694 VAL+RPGP++ + + + K+G E+ Q H + +LE T GII+YQEQVMQIA Sbjct: 652 VALYRPGPME--NIPTYCEVKNGLREL-----QSIHPLIDDILEETQGIIVYQEQVMQIA 704 Query: 695 QVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGY 754 QV++GY+LGGAD+LRRAMGKK EEMAK+R F +GA NG++ + A ++FDL+EKFA Y Sbjct: 705 QVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFEKGAVANGVDKDKAREVFDLLEKFANY 764 Query: 755 GFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILP 813 GFNKSH+AAYA+VSYQT WLKA++P EFMA VM D+ T+K+ +E + L +P Sbjct: 765 GFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAIYFEEVRKRLELPWVP 824 Query: 814 PDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNK--------GGYFRELFDL 865 P +N F V DG +VY +GA+K VG ++ I + R F LFDL Sbjct: 825 PCVNRSDATFKVA-DGALVYALGALKNVGVEAMKLITDGRRADPGDEGSPDKPFATLFDL 883 Query: 866 CARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFG 925 R D K++ +R LE L SGAFD L +R + +L + + + +A Q +FG Sbjct: 884 ARRVDLKRVGKRPLEMLARSGAFDALDANRRRVFGALDALVNYSAAIHEQKASNQVSLFG 943 Query: 926 VLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVR---- 981 + + E W L E + +G YL+GHP++ Y+ +++R G R Sbjct: 944 EAGD--DLPEPRLHPVDDWQPAERLSEEFKAVGFYLSGHPLDDYMGQLKRKWGNDRGVPF 1001 Query: 982 --LKDMHPTERGK---VITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALD 1036 L ++ + AG+V + + RGNR + D +G EV LF+D L+ Sbjct: 1002 MTLDELTEKVTERGAMNARLAGIVAGRQERKSARGNRFAFAQMSDPTGAYEVTLFSDTLE 1061 Query: 1037 KYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREK-YARGLAISLTDRQIDD 1095 + LE ++V+ V S LK+ R V ID A + GL + + Sbjct: 1062 AARDYLEAGSKVVVT--VEATMESDQLKLLGRSVGPIDAATADVSSMGLKVFVDA----P 1115 Query: 1096 QLLNRLRQSLE---PHRSGTI--PVHLYYQRAD--ARARLRFGATWRVSPSDRLLNDLRG 1148 + + + LE G PV L AD + G + V+P ++ ++ Sbjct: 1116 EAVAAVATVLEGAGRAVKGRAQGPVMLCLMGADLPGEVEVELGQDFIVNP--QIKGAIKS 1173 Query: 1149 LIGSEQVE 1156 L G +VE Sbjct: 1174 LSGVLEVE 1181 >UniRef50_C8W788 DNA polymerase III, alpha subunit n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8W788_ATOPD Length = 1278 Score = 1150 bits (2974), Expect = 0.0, Method: Composition-based stats. Identities = 415/1286 (32%), Positives = 621/1286 (48%), Gaps = 156/1286 (12%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPAL-----------------------AIT 42 FVHL HSD+S++DG ++ +V KA GMPAL A+ Sbjct: 3 FVHLHNHSDFSILDGASRVPDMVSKAVEFGMPALALTDHGYLFGIPDFDLACRKYNEALK 62 Query: 43 DFTNLCGLVKFYGA-------------GHGAG---------------------------- 61 DF C V+ + Sbjct: 63 DFGQWCHDVECFEKGWDLEEPPADAPDAQEHDRVHAQWASDVQIWNQTHNIEAVKANKPS 122 Query: 62 --IKPIVGADFNVQCDLLGDEL-----THLTVLAANNTGYQNLTLLISKAYQRGYGAAGP 114 IKPI G + D ++ HL +LA N TGY NL ++S+A + P Sbjct: 123 PLIKPIFGCEAYFILDDCIEKGTKQVRYHLILLAKNETGYVNLMKMMSEAGSKEMFYYKP 182 Query: 115 IIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTG 174 + L +EG+I S G + R L G + Y++ F D ++LE+ G Sbjct: 183 RTTLEMLKRYHEGIICTSACVSGIIPRMLFEGRPEEAERWAKIYQDIFGDDFYLEIQDHG 242 Query: 175 RPD-------EESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDD 227 D + + V++ G+ VVATND ++ D +I I G +DD Sbjct: 243 LSDPSWGGYTDRTLAERIVKMGHDLGIKVVATNDNHYLTKEDASVQDIASCIGSGARVDD 302 Query: 228 PKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT--GD 285 R R + Y++SE+EM ++F+ PEA+ NT+E+A +CN + +LP+FP Sbjct: 303 ENRKRMTGSEFYLKSEQEMRQIFSWCPEAIENTIEVANKCNYELDWTHMYLPKFPDLAEG 362 Query: 286 MSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVM 345 ++E+ K + GL R D + + +R E E +I + GF YFLIV Sbjct: 363 ETSEERFRKECELGLARRYGD---DWQNVVINEINVKDRFEYEYDIICKKGFADYFLIVQ 419 Query: 346 EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405 E+++W+K+NG+ VGPGRGS AG++VAYA+ IT DPLE L+FERFL+P+R MPD D+D Sbjct: 420 EYVRWAKENGIGVGPGRGSAAGAIVAYAMDITSFDPLENGLMFERFLSPQRSEMPDIDMD 479 Query: 406 FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465 F E+R +V+EHV +YG + VS +IT+ T+ AK I D RVLG+P R+SK+IP Sbjct: 480 FDDERRLEVVEHVRQIYGSERVSHVITYSTIKAKQAINDACRVLGYPVYMGQRLSKMIPG 539 Query: 466 DPGMTLAKAFEAEPQ-----------LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGG 514 DP L + E YE D + + +ID A +EG+ R G HA Sbjct: 540 DPNAHLKFVLHKAQEGQKGADQYSADFEEAYENDPDARRIIDAALSIEGLHRGEGVHACA 599 Query: 515 VVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINK 574 V+IAPT + D P D +G +TQ++ V GL+K DFLGLRTLT+I+ A++ + Sbjct: 600 VLIAPTPVNDHVPTKVDTKGGVEITQYEGHSVADMGLLKMDFLGLRTLTVISRAIKNVKD 659 Query: 575 RRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIAL 634 + +D+ +IP D + + +L+ T VFQ+ES GM IK ++P ++ ++AL Sbjct: 660 SYGID----IDVDSIPFTDPEIYRLLREGRTAGVFQVESAGMTATIKGMRPTEYKHIVAL 715 Query: 635 VALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIA 694 +AL+RPGPL +GMV ++I+R +GREE+ + L +LE TYG ++YQEQVMQI+ Sbjct: 716 IALYRPGPLNAGMVTSYINRMNGREEV-----KDYDPRLHDILEETYGTMVYQEQVMQIS 770 Query: 695 QVLSGYTLGGAD-----------MLR-RAMGKKKPEEMAKQRSVFAEGAEKNGINAELAM 742 +SG+T G +D L + + + GA +NG + +A Sbjct: 771 MKMSGFTAGESDKVRKAVAKKKIKLMQEVVQHWDDGTDETMEAHWKNGAVRNGFDRSVAE 830 Query: 743 KIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVD 802 I+D V +FA Y FNKSHSA YA++ QT W+KAHYP EFMAAV+T+ M T+K+V V Sbjct: 831 SIWDDVLEFASYAFNKSHSAGYAILVMQTAWIKAHYPHEFMAAVLTSYMGKTDKIVHYVS 890 Query: 803 ECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFREL 862 C G+KILPPDIN F +G I +G I+GVG G EAI+ R KGG F + Sbjct: 891 ACRHEGIKILPPDINESGKDFTATKEG-IRFGFAGIRGVGAGVGEAIMLERQKGGPFANI 949 Query: 863 FDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLG-----DALKAADQHAKAEA 917 D R D + R V+E LI +GAFD G R +M+ + + + AA + K +A Sbjct: 950 HDFVDRMDASQAKRNVVEALIKAGAFDSTGYTRMQMMSFVDKNNPQNIIDAATKRQKDKA 1009 Query: 918 IGQADMFGVLAEEPEQIEQSYASCQ---PWPEQVVLDGERETLGLYLTGHPINQYLKEIE 974 +GQ MF + AE W + L E E LG+Y++ HP+ Y + Sbjct: 1010 VGQFSMFDMFAEVEGSGFSDIVPEPDGVEWDRRFKLTKEYEVLGIYVSDHPLRPYEYALA 1069 Query: 975 R---------------YVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTL 1019 + + + GK I AG+V TK G+ + I TL Sbjct: 1070 KSRDYALAEIEENVEVQLPNGAMSQQFKVPEGKPIRFAGMVTNVMKRTTKNGDPMAIVTL 1129 Query: 1020 DDRSGRLEVMLFTDALDKYQQLL-----------EKDRILIVSGQVSFDDFSGGLKMTAR 1068 +D G + +++F K +LL + D + V G++ D ++ A+ Sbjct: 1130 EDMEGSVTIVMFPKLYKKAARLLAGDVDPETGESQSDIFISVLGKLERSDRGD--QVIAQ 1187 Query: 1069 EVMDID-EAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARAR 1127 EV I+ + + L I + Q++ Q++ L Q + + + + D Sbjct: 1188 EVSPIELNSANNTPKTLVIHMPASQLERQVIETLGQIFSRYPGMDC-IEIRVE-TDRGDV 1245 Query: 1128 LRFGATWRVS-PSDRLLNDLRGLIGS 1152 +R R+ S LL +L+ LIG Sbjct: 1246 MRMEIPTRIDGRSMVLLTELKDLIGQ 1271 >UniRef50_B5JFB3 DNA polymerase III, alpha subunit subfamily, putative n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JFB3_9BACT Length = 1259 Score = 1148 bits (2970), Expect = 0.0, Method: Composition-based stats. Identities = 426/1250 (34%), Positives = 659/1250 (52%), Gaps = 121/1250 (9%) Query: 1 MSEP---RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAG 57 MS P FVHL H+ YS++DG AK ++ LGMPALA+TD NL G + FY + Sbjct: 1 MSNPAEGPFVHLHNHTHYSLLDGCAKPLRAAQRCLELGMPALAMTDHGNLFGAIDFYRSC 60 Query: 58 HGAGIKPIVGADFNVQCDLLGDE------------------------------LTHLTVL 87 GIKP++G + D E + H V+ Sbjct: 61 KKVGIKPLIGCELYYVNDHKQSERPRRERKRTDDIGDIPEHYVPPKEDFPKYQIHHKGVI 120 Query: 88 AANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGN 147 A N GYQNL L+S A+ G P D + L + ++GLI LSG G + L+ G+ Sbjct: 121 AKNFEGYQNLCKLVSDAHINGV-YYKPRADIETLAKYSKGLIGLSGCINGVAAQYLIYGD 179 Query: 148 SALVDECVAFYEEHFP-DRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFID 206 + A + + F + YF+E+ G P + + ++LA+ L V+ ND ++ Sbjct: 180 EENARKATATFVDIFGKENYFIEIQDHGMPVQRRIIPGLLKLAKEFDLKVICANDSHYVY 239 Query: 207 SSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKR 266 D + H+ + I G ++D R + S + Y++S +EM E+F ++PE+L NTV +A+ Sbjct: 240 KEDANPHDALLCIQTGKIIEDENRMKYPSQEFYLKSRQEMYEIFKEVPESLDNTVHVAEM 299 Query: 267 CNVTVRLGEYFLPQFPTGDM------------------------------------STED 290 ++ + E P F + E+ Sbjct: 300 VDLEIPFDEDHYPVFECPPELGYKSDDDAFDRILDIYELEKTKVNKQNGDDTVCKLTAEE 359 Query: 291 ---------YLVKRAKEGLEERLAFLFPDEEERLKRRPE-------YDERLETELQVINQ 334 L+ K+GL+ER + D + + E ++++ +L +I Sbjct: 360 RANHKKNGFVLLDLCKKGLKERYGVDYDDRASYVPKEGEREDFAEFVCDQMDFQLAIITG 419 Query: 335 MGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNP 394 GF YFLIV +FI +++ G+PVGPGRGSGAG ++AY LKITD+DPL F LLFER LN Sbjct: 420 TGFVDYFLIVWDFINFARSQGIPVGPGRGSGAGCIIAYVLKITDIDPLRFGLLFERMLNL 479 Query: 395 ERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYG 454 ERVS PDFD+DFCM +RD V+ +V + YG D+V+ IITFGT AK ++RD+ RV + Sbjct: 480 ERVSPPDFDIDFCMRRRDVVVNYVREKYGHDSVANIITFGTFGAKMIVRDLARVNNLQFA 539 Query: 455 FVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGG 514 D+I+K+IP + ++L + E L + K +++ + +EG+ RN GKHA G Sbjct: 540 EADKIAKMIPDELNISLDDSVEKSSDLRNEIAVNPVAKKIVEHGKVIEGMVRNTGKHACG 599 Query: 515 VVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINK 574 ++I I + P+ TQ+ K E GL+K DFLGL+TLT+I+ A + I Sbjct: 600 IIIGDQPIHNLVPVTLQ--EGDLTTQYPKGPSEDLGLLKMDFLGLKTLTVISDAQDNIQA 657 Query: 575 RRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIAL 634 R P DI + L+D K++D+L T VFQLES GM++L K++ FE++IAL Sbjct: 658 TRNL---PDFDIEKVTLEDPKTYDLLNAGNTVGVFQLESGGMQNLCKQIGLSVFEEIIAL 714 Query: 635 VALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIA 694 +AL+RPGP+Q + FI+ K ++I P H L+ ++ TYG+++YQEQVM+ A Sbjct: 715 IALYRPGPMQ--FIPQFIEGKRDPKKIQIP-----HPLLEELVSETYGVLVYQEQVMESA 767 Query: 695 QVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEK-NGINAELAMKIFDLVEKFAG 753 ++++GYTLGGADMLRRAMGKK M Q+ +F +GA+ +GI + A+ IF ++EKFA Sbjct: 768 RIIAGYTLGGADMLRRAMGKKIASVMEAQKQIFVDGAKATHGIKEKEALNIFAILEKFAQ 827 Query: 754 YGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILP 813 YGFNKSHSAAYA++SY+T +LKA+YP EFMAA+++A++ N +KV +DE MG+++L Sbjct: 828 YGFNKSHSAAYAMLSYRTAYLKANYPVEFMAALLSAELGNADKVSHFIDEANSMGIRVLS 887 Query: 814 PDINSGLYHFHVNDD----------GEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELF 863 PDIN F D G IV+G+GA+KGVG+ + II R+ G + + Sbjct: 888 PDINKSKEMFTPVIDSEEDIADGKLGSIVFGMGAVKGVGDSAAKTIIAERDANGPYEGMD 947 Query: 864 DLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADM 923 +L R DTK +N+RVLE LI +GAFD G R +L + L A+ A + + + GQ Sbjct: 948 ELLERVDTKSVNKRVLENLIKTGAFDFTGEPRGSLFHRLEGAMNQAAEAQRDKERGQESF 1007 Query: 924 FGVLAEEP-EQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRL 982 F ++ EEP E+ + + + + +L E+E LG Y++GHP+++Y E L Sbjct: 1008 FDMIVEEPKEKDAPQWDLSKQFTKTEMLRYEKELLGFYVSGHPLDEYKGIAEALTNFD-L 1066 Query: 983 KDMHPTERGKVITAAGLVVAARVMVTKR-GNRIGICTLDDRSGRLEVMLFTDALDKYQQL 1041 + A G+ ++++ +L R L+V + DA ++Y Q Sbjct: 1067 SKVDQLGDKVEFQACGVAGGVVKKLSRKDNRPWAFFSLGTRKTSLQVNCYADAFEEYGQN 1126 Query: 1042 LEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRL 1101 LE D ++++ G V D G +++ E+ ++ + + L + D L + Sbjct: 1127 LENDALVLIKGTVIRRD--GEVRLNVLEIHPLEAFMPGQIKHITWVLDPDKDTDSFLYKY 1184 Query: 1102 RQSLEPHRSGTIPVHLYYQRAD---ARARLRFGATWRVSPSDRLLNDLRG 1148 R+ L+ R GT + ++ +D A A WRV+ ++ ++LR Sbjct: 1185 REVLDRTR-GTTTSDIAFRISDTCIASANTASSLRWRVNTNE--WSELRK 1231 >UniRef50_B2RGQ8 DNA polymerase III alpha subunit n=2 Tax=Porphyromonas gingivalis RepID=B2RGQ8_PORG3 Length = 1228 Score = 1148 bits (2970), Expect = 0.0, Method: Composition-based stats. Identities = 415/1243 (33%), Positives = 635/1243 (51%), Gaps = 122/1243 (9%) Query: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG-- 61 FVHL VHS +S++DG A LV KA A GMP +A+TD + G+ +FY Sbjct: 2 EPFVHLHVHSQFSLLDGQAAINDLVDKAIADGMPGIALTDHGAMFGIKEFYNYVEKKNSG 61 Query: 62 ----------------------------------------------IKPIVGADFNVQCD 75 KPI+G + Sbjct: 62 HNATLKDCRRELDQLNDSKSADMLTDEERNRIVKLQQKIEETKKLLFKPILGCEAYCARR 121 Query: 76 LLGDE-----------------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDR 118 D+ HL +LA N GY+NL ++S ++ G P IDR Sbjct: 122 TRFDKDNQIPDPYHPRRSIDASGWHLILLAKNLRGYKNLIKMVSYSWTEG-QYYRPRIDR 180 Query: 119 DWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGR--- 175 + L + +EG+I+ S G++ + ++ G A +E + +++E F D Y+LE+ R Sbjct: 181 ELLQKYHEGIIVSSACLGGEIPQHIMAGEIAKAEEAILWFKELFGDDYYLEVQRHETHNP 240 Query: 176 -------PDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228 P ++ +EL + G+ V+ATNDV F + D +AH+ + + G LDDP Sbjct: 241 LGNQDVFPQQQRVNRVILELGKKLGVKVIATNDVHFCNEEDAEAHDRLICLSTGKDLDDP 300 Query: 229 KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-- 286 R R Y+ Q++M++ EM +F D+PE L+NT+EI + + +P FP Sbjct: 301 NRMR-YTKQEWMKTTAEMSAIFEDLPETLSNTLEILDKVEFYSIDNKALMPDFPIPPEYK 359 Query: 287 STEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVME 346 +DYL EG + D E ER++ EL+ I MGFPGYFLIV + Sbjct: 360 DDDDYLRFLTYEGARRKYGEDLSD---------EIKERIDFELETIKGMGFPGYFLIVQD 410 Query: 347 FIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 406 FI ++ GV VGPGRGS AGS VAY L ITD+DP+++ LLFERFLNP+R+SMPD DVDF Sbjct: 411 FIAAARSMGVSVGPGRGSAAGSAVAYCLGITDIDPIKYHLLFERFLNPDRISMPDIDVDF 470 Query: 407 CMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL---- 462 + R +++ V + YG++ V+ IIT+GTMA K+ I+DV RV P +R++KL Sbjct: 471 DDDGRAEILRWVTEKYGKERVAHIITYGTMATKSSIKDVARVQRLPLPESNRLAKLVPDK 530 Query: 463 IPPDPGMTLAKAFEAEPQLPEIYEADEEV-KALIDMARKLEGVTRNAGKHAGGVVIAPTK 521 IP + + L KA E P+L + + ++V + + A+ LEG RN G HA G++I T Sbjct: 531 IPGEKKVNLKKAIEFVPELKQASLSSDKVMRDTLKYAQMLEGNVRNTGVHACGIIIGKTD 590 Query: 522 ITDFAPLY----CDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRA 577 I+D P+ D + + VTQ++ S +E GL+K DFLGL+TL+II AL I +R Sbjct: 591 ISDVVPVSTAPDKDTKEELLVTQYEGSVIEQTGLIKMDFLGLKTLSIIKEALVNIKRRHG 650 Query: 578 KNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVAL 637 + L+I IPLDD ++ + T FQ ES GM+ ++ LQP FED+IA+ AL Sbjct: 651 ID----LNIDTIPLDDPLTYKLYSDGRTIGTFQFESGGMQKYLRELQPSAFEDLIAMNAL 706 Query: 638 FRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVL 697 +RPGP+ + +FI RKHGRE I Y ++ L+ TYG+ +YQEQVM +++ L Sbjct: 707 YRPGPMD--YIPSFIARKHGREPIDYDL-----PEMEEYLKETYGVTVYQEQVMLLSRKL 759 Query: 698 SGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFN 757 +G+T G +D LR+AMGKK E+M + F EG KNG E+ KI+ EKFA Y FN Sbjct: 760 AGFTRGQSDELRKAMGKKLIEKMNVLKVKFLEGGNKNGHPEEVLEKIWTDWEKFASYAFN 819 Query: 758 KSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDIN 817 KSH+ Y+ V+YQT +LKA+YPAE+MA ++ +++N ++ L+DEC M + +L PD+N Sbjct: 820 KSHATCYSWVAYQTAYLKANYPAEYMAGALSRNLNNITEITKLMDECKSMKIGVLVPDVN 879 Query: 818 SGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRR 877 F VN +G+I +G+ A+KGVG G +E II R G ++++FD R + NR+ Sbjct: 880 ESEMKFSVNANGDIRFGLSAVKGVGSGAVEQIIAEREANGLYKDIFDFVERINLSACNRK 939 Query: 878 VLEKLIMSGAFDRLGPHRAALMN---------SLGDALKAADQHAKAEAIGQADMFGVLA 928 +E L ++GAFD R M + ++ + + +FG Sbjct: 940 TMESLALAGAFDSFALSREEYMAPPLTGREESYIQALMRYGSVVQEEKHSQSNSLFGEEE 999 Query: 929 EEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPT 988 + Q + +PW + L+ ERE +GLYL+ +P+ QY ++ Y P Sbjct: 1000 DLMIPRPQPSPT-EPWNDLERLNKERELVGLYLSSNPMAQYQVILDHYCNTHAADLTDPD 1058 Query: 989 E-RGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRI 1047 GK + AG+V A +++ N TL+D SG E+ LF A + ++ Sbjct: 1059 SLVGKNLVLAGIVTKAFQGISRSNNPYSKITLEDLSGTGEIPLFGQAHVNFGNYCKEGLY 1118 Query: 1048 LIVSGQVSFDDF-SGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLE 1106 L++ V + G +++ + + + + + + I L +ID++L+ L L Sbjct: 1119 LLIRASVQPHKWKEGEMELVVTSIELLPQVADTLIKKMTILLPASKIDNELIEMLSDELT 1178 Query: 1107 PHRSGTIPVHLYYQRADARARLRFG-ATWRVSPSDRLLNDLRG 1148 + SG + + + + S L+N L+ Sbjct: 1179 NN-SGKTMLFIKVYDHTETFDVELAQQKSLIKVSPELVNRLKT 1220 >UniRef50_B4CWT5 DNA polymerase III, alpha subunit n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CWT5_9BACT Length = 1219 Score = 1146 bits (2965), Expect = 0.0, Method: Composition-based stats. Identities = 431/1248 (34%), Positives = 651/1248 (52%), Gaps = 137/1248 (10%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS FVHL H++YS +DG + +KKA GMPALAITD NL G ++FY AG + Sbjct: 1 MSADSFVHLHCHTEYSTLDGAVRIKEAMKKAKEYGMPALAITDHGNLFGAIEFYQAGKSS 60 Query: 61 GIKPIVGADFNVQCDLLGDEL--------THLTVLAANNTGYQNLTLLISKAYQRGYGAA 112 G+ PI+G + V D + HLT+LA N+ GY+NL L+S A+ G Sbjct: 61 GVNPIIGCEVYVAPDSHLKKTATTQRESAFHLTLLAQNDQGYRNLVKLVSIAHLDGM-YY 119 Query: 113 GPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELI 171 P ID++ L + +GLI LSG G++ ++++ N E Y + P+ +F+EL Sbjct: 120 KPRIDKELLAQYGKGLIGLSGCLKGEINQAIIEDNLPKAKELTGAYRDILGPENFFIELH 179 Query: 172 RTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRP 231 G + LA+ GL +VA NDV F+ +D AH+ + I G + D +R Sbjct: 180 NHGIEAQLKCNKTLPVLAKEFGLGLVAANDVHFLQRTDHAAHDALICIGTGSNIADERRM 239 Query: 232 RNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF-PTGDMSTED 290 +Y + Y +S EM LFA++PEA NT+ IA+RCN+T+ P + P + + Sbjct: 240 -HYVQEVYFKSPAEMRALFAEVPEACDNTLAIAERCNITIDTS-PKYPNYTPPPGRTQNE 297 Query: 291 YLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQW 350 YL + G+ R +R E E+ V+ + GF YFLIV +FI W Sbjct: 298 YLREITLAGMHRRYGSD--------ADSEIVQKRFELEISVLEKQGFTNYFLIVWDFINW 349 Query: 351 SKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEK 410 +K++G+PVGPGRGS AGS++AYA+ ITD+DP++F LLFERFLNPERVS PD DVDFC+ + Sbjct: 350 AKEHGIPVGPGRGSAAGSMIAYAMGITDIDPIKFKLLFERFLNPERVSPPDIDVDFCVNR 409 Query: 411 RDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMT 470 R +VI++V YG AVSQIITFGT+ AK+V+RDV RV G YG DR++K+IP + G+T Sbjct: 410 RGEVIDYVRQKYGERAVSQIITFGTLGAKSVLRDVARVQGWSYGDADRVAKMIPNELGIT 469 Query: 471 LA----------------KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGG 514 L A + P+L + + + L D+A KLEG+TR G HA G Sbjct: 470 LKGLDKKNKETGQMDHIAGAIDKNPELKKAVDTEPATAQLWDVATKLEGLTRGVGVHAAG 529 Query: 515 VVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINK 574 VVI ++D+ PL + V+Q+ + G++K DFLGL+TLT+I A+ +I Sbjct: 530 VVIGDRDLSDYIPLTRAND-NSIVSQYAMGPLTDVGMLKCDFLGLKTLTVITDAVVLIRH 588 Query: 575 RRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIAL 634 R EP D+ IPL+++ +FD+L R ET +FQLES GM + ++ ED+ A+ Sbjct: 589 R-----EPDFDVDKIPLENQPTFDLLNRGETIGIFQLESGGMVSVCRQFDIKDIEDINAI 643 Query: 635 VALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIA 694 +AL+RPGP+ + ++I + + V+ H+ L + + TYG+++YQEQVMQ A Sbjct: 644 LALYRPGPMDL--IPDYI-----KRKKGKAKVKAPHKLLLDMTKETYGVLVYQEQVMQAA 696 Query: 695 QVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEK-NGINAELAMKIFDLVEKFAG 753 Q+L+GYTLGGAD+LRRAMGKK E+MAK+R F EG + + I + A +IFD +EKFAG Sbjct: 697 QILAGYTLGGADLLRRAMGKKDKEKMAKERIKFCEGCKNLHNIEEKTANEIFDTLEKFAG 756 Query: 754 YGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILP 813 YGFN+SHSAAYA +SYQT +LKA+YP EFMAAVM+ ++ NT+K+ V EC RMG+ ILP Sbjct: 757 YGFNRSHSAAYAWISYQTAYLKANYPVEFMAAVMSNEVSNTDKISIFVGECERMGMTILP 816 Query: 814 PDINSGLYHFHVNDDG--EIVYGIGAIKGV---------GEGPIEAIIEARNKGGYFREL 862 PD+N F + I A + + GE E+I E F +L Sbjct: 817 PDVNKSGLKFTPEEVNVEGIAAAQAARRKLQVAAQATEQGEDAPESIEEE---NVRFEDL 873 Query: 863 FD-----------------------------LCARTDTKKLNRRVLEKLIMSGAFDRLGP 893 + ++E+ GAF L Sbjct: 874 PSGPGTNGSAGAETPASDEKIHVGSIRYGLAAIKNVGEAAVAAAIVERNNK-GAFQSLED 932 Query: 894 ----------HRAAL-------------------MNSLGDALKAADQHAKAEAIGQADMF 924 ++ AL + + AL AA + A+GQ MF Sbjct: 933 FCGRVDVKKMNKKALECLVKCGAFDWTGVERAQLHSEIDGALAAASSANRDRAVGQFSMF 992 Query: 925 GVLA---EEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVR 981 + + + S PW L E+E LG Y+TGHP+++Y +E++ V Sbjct: 993 DDFEISGKATKTTKGSAPKVAPWSSTEKLAYEKELLGFYVTGHPLDEYRSALEKF---VP 1049 Query: 982 LKDMHPTERGKVITAAGLVVAARVMVTKR-GNRIGICTLDDRSGRLEVMLFTDALDKYQQ 1040 + + E +T G + + TK+ + L+D + LEVM++ + +K Q Sbjct: 1050 IAKLSEEEDKSTVTIGGALASVEKKFTKKDNKPFAVVVLEDVTASLEVMIWNETFNKSQA 1109 Query: 1041 LLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNR 1100 LL + ++ ++G++ + ++ A E+ + + + + + + + L+ Sbjct: 1110 LLVQGSVVSITGRLDLRE--EAPRLVANELKLVKKPAPTE-KPVVLYFHASKTTEGDLST 1166 Query: 1101 LRQSLEPHRSGTIPVHLYYQRADARARLRF--GATWRVSPSDRLLNDL 1146 + ++ G + L + D R +R G ++V+ +D + +L Sbjct: 1167 VLGVVQRF-PGPRRLELRFTDGDGRTLVRMAAGNEFKVAWNDAVSKEL 1213 >UniRef50_C8PHM9 DNA polymerase III, alpha subunit n=1 Tax=Campylobacter gracilis RM3268 RepID=C8PHM9_9PROT Length = 1381 Score = 1146 bits (2964), Expect = 0.0, Method: Composition-based stats. Identities = 420/1132 (37%), Positives = 650/1132 (57%), Gaps = 70/1132 (6%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS + HL +H++YS++DG K + L + + G A AITD N+ G + FY Sbjct: 1 MS--DYTHLHLHTEYSLLDGANKVSELAELLQSRGTKACAITDHGNMFGAIDFYQTMKKH 58 Query: 61 GIKPIVGADFNVQCDLLGDEL-----THLTVLAANNTGYQNLTLLISKAYQRGYGAAGPI 115 GIKPI+G + + + HL +LA N TGY+NL L S+A+ G+ P Sbjct: 59 GIKPIIGIETYLHNHDDIGDKSDRQRYHLILLAKNETGYKNLMYLSSRAFLDGFYYY-PR 117 Query: 116 IDRDWLIELNEGLILLSGGRMGDVGRSLLR---------GNSALVDECVAFYEEHFPDRY 166 I++ L E +EGLI S G+V L R G + Y+E F + + Sbjct: 118 INKKILKEHSEGLICSSACLAGEVEFHLNRSERNLKRGAGGYEAAKKAALEYKEIFGEDF 177 Query: 167 FLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLD 226 +LE++R G ++ + + L+ G+ ++ATND + AH++ I G T++ Sbjct: 178 YLEIMRHGIGEQLNVDKDLIRLSREIGVKIIATNDAHYSRKDRAKAHDVYQCISMGKTIN 237 Query: 227 DPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM 286 D R ++ + Y++S+EEM LFADIPE + NT EI ++CN+ E P Sbjct: 238 DGDRLKHVVSEFYVKSDEEMRRLFADIPEVIENTAEIVQKCNLKFAFDEKDYAPTPPNFK 297 Query: 287 STEDY-----------------------LVKRAKEGLEERLAFLFPDEEERLKRRPEYDE 323 T +Y +EGL+ERL F+ P + Y E Sbjct: 298 FTIEYAARLGLSLPQPDERYSFANDDFLFDHLCREGLKERLKFIDP------AKHEIYRE 351 Query: 324 RLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLE 383 RLE EL +I M F GY +IV +FI W+KD+ +PVGPGRGS AGS+ AYAL+ITDLDP+ Sbjct: 352 RLEKELAIIKNMHFSGYMVIVQDFINWAKDHDIPVGPGRGSAAGSICAYALRITDLDPIP 411 Query: 384 FDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIR 443 ++LLFERFLNP R+SMPD DVDFC +R +VI++V D YG+ V+Q+ TFG + A+ VIR Sbjct: 412 YNLLFERFLNPSRISMPDIDVDFCQARRGEVIDYVIDQYGKFNVAQVATFGKLLARGVIR 471 Query: 444 DVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEG 503 DV RV P D+++KLIP G+TL +A++AEP+L E +AD + + + A LEG Sbjct: 472 DVARVCDMPLSQADKMAKLIPDKLGITLTQAYDAEPKLKEFIDADPIAQQVWEFALGLEG 531 Query: 504 VTRNAGKHAGGVVIAPTKITDFAPLYCDEEGK--HPVTQFDKSDVEYAGLVKFDFLGLRT 561 + RNAG HA GVVI+ + + APL+ ++G+ VTQ+ K+ +E L+KFDFLGL+ Sbjct: 532 LNRNAGMHAAGVVISNEPLWNKAPLFKQDKGEDARLVTQYTKNYLEDVDLIKFDFLGLKN 591 Query: 562 LTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIK 621 L +I+ A +++ +R ++ + I +D+K+++ +Q T +FQ+E GM+DL Sbjct: 592 LDVIDNAAKLVKRRYGRD----IVWEEIDFNDRKTYETIQSGNTLGIFQIEGAGMQDLAM 647 Query: 622 RLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTY 681 L+PD FED+IA+++L+RPGP+ + +FI KHG + SY LK +LEPTY Sbjct: 648 NLRPDRFEDIIAMISLYRPGPMDL--IPDFIRIKHGELKASY-----IFPELKEILEPTY 700 Query: 682 GIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELA 741 GII+YQEQVMQI Q + G++LG AD++RRAMGKK +++A R + GA++ G + A Sbjct: 701 GIIVYQEQVMQIVQKVGGFSLGDADLVRRAMGKKDEKKLAHMREQYLSGAKELGFDVAKA 760 Query: 742 MKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLV 801 ++FDL+ KFA YGFNKSH+AAY+++++QT +LK +YPAEFMAA++T++ NT+K+ + Sbjct: 761 DELFDLIMKFASYGFNKSHAAAYSMITFQTAYLKTYYPAEFMAALLTSEEGNTDKISKYI 820 Query: 802 DECWRMGLKILPPDINSGLYHFHVNDDGE------IVYGIGAIKGVGEGPIEAIIEARNK 855 DE R+G+ +LPP IN L F V DD I+YG+GAIKGVG IE I+E +++ Sbjct: 821 DEASRLGIGLLPPSINQSLRGFSVVDDENSKSGTSIIYGLGAIKGVGAAAIENILELQSE 880 Query: 856 GGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKA 915 F+ + D +R D ++N++V+E LI +GA D LG R A++ ++ + L+ + + Sbjct: 881 AK-FQSIDDFASRVDNFRVNKKVIESLIYAGAMDCLGKSRLAMIQNMENILEVMKKITEI 939 Query: 916 EAIGQADMFGVLAEEPEQIEQSYASCQ-PWPEQVVLDGERETLGLYLTGHPINQYLKEIE 974 + + +FG + + S+ +P+ +L E++T+G+YL+GHP++ Y +EIE Sbjct: 940 KKDAASSLFGEDEDMTSGMSVSFVDTDKEFPQGEILKFEQQTVGVYLSGHPLDDYKEEIE 999 Query: 975 RYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDA 1034 + + + G + +TK G ++GI + D G E+ +F +A Sbjct: 1000 GIDYTLSSAFSEIEGDSAEVLSVGRIEDLSTRMTKTGKKMGILNVLDLHGSFELAVFDNA 1059 Query: 1035 LDKYQQLL--EKDRILIVSGQVSFDDFSG-GLKMTAREVMDIDEAREKYARG 1083 L + L E++R ++S G +++ +M + AR+ R Sbjct: 1060 LKAIENLSPQERERPYAFMIKISKSAVGGAAYQLSFLSMMSLQNARDASFRP 1111 Score = 61.0 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 40/226 (17%), Positives = 79/226 (34%), Gaps = 18/226 (7%) Query: 862 LFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHA-KAEAIGQ 920 + DL R +L L + G+F+ + +ALKA + + + Sbjct: 1025 IEDLSTRMTKTGKKMGILNVLDLHGSFE---------LAVFDNALKAIENLSPQERERPY 1075 Query: 921 ADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERE-TLGLYLTGHPINQYLKEIERYVGG 979 A M + + Q D G++L+ +P+ Y ++ Sbjct: 1076 AFMIKISKSAVGGAAYQLSFLSMMSLQNARDASFRPHAGVFLSENPLKAYAAQLGAIAHT 1135 Query: 980 VR--LKDMHPTERGK-VITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALD 1036 ++ E I G + TK G ++ T+ D +G E+ F D D Sbjct: 1136 KSNEFDELAGDEDASVKILCVGKIENVHTRTTKSGKQMANLTVLDLAGSFEMSAFGDICD 1195 Query: 1037 KYQQL--LEKDRILIVSGQVSFD--DFSGGLKMTAREVMDIDEARE 1078 L E +R + ++S + + G ++ E++ +D A+ Sbjct: 1196 AVTALTDAELERPMAFWARLSKNTSPYGGKFQIYLDEILTLDAAQN 1241 >UniRef50_A4IRQ9 DNA polymerase III alpha subunit n=5 Tax=Geobacillus RepID=A4IRQ9_GEOTN Length = 1095 Score = 1145 bits (2962), Expect = 0.0, Method: Composition-based stats. Identities = 405/1154 (35%), Positives = 612/1154 (53%), Gaps = 64/1154 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL V S YS+ A LV KA LG ALA+TD L G + FY G++PI Sbjct: 5 FVHLHVLSGYSLFQSTATVEALVAKAKQLGYRALALTDHQVLYGAIPFYRECQRHGLRPI 64 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 +G +V D L +LAAN GY++L + + + L L+ Sbjct: 65 IGMMADVVLDG-DSGAFPLVLLAANEEGYRHLIEISTAVQM----REEKHVHEAALRRLS 119 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 185 G+I ++ G G V L G A E + Y + F R ++ + R G Y A Sbjct: 120 GGIIAITPGLNGRVESFLAAGEVAQAKETLLRYRQLFAGRLYIAIQR-GERTRAPYESAL 178 Query: 186 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 245 + LAE G+PVVATN+VR+++ D A AI DG L ++Y+ + +E Sbjct: 179 LRLAEETGVPVVATNEVRYVEREDALAWRCLQAIGDGVPLAHIPEE----DERYLAALDE 234 Query: 246 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKRAKEGLEERL 304 M FAD+PEAL N++ IA +C + + G + LP+FP D + + YL + ++GL R+ Sbjct: 235 MARRFADLPEALENSMNIANQCELHIEFGHWRLPKFPVPDGETADSYLRRLCEQGLARRV 294 Query: 305 AFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGS 364 Y ERLE EL +I M F YFLIV + + +++ G+ GPGRGS Sbjct: 295 P----------SADARYRERLEHELHIIQTMRFSDYFLIVADVLAYARQRGILTGPGRGS 344 Query: 365 GAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGR 424 AGSLVAYAL ITD+DP+E+ LLFERFLNPERVS+PD D+DF ++R++VI +V + YGR Sbjct: 345 AAGSLVAYALSITDVDPIEYGLLFERFLNPERVSVPDIDLDFPDDRREEVIRYVVETYGR 404 Query: 425 DAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEI 484 D V+QIITFGT AKA +R+ +VLG +R+ L+P G+T+++ Sbjct: 405 DHVAQIITFGTFGAKAALRETAKVLGVSGREAERVMALLPNKQGVTISQWHRESAAFRRA 464 Query: 485 YEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKS 544 A + + + +A+KLEG+ R+ HA GV+I+P + PL G+ P+TQ+ Sbjct: 465 LRALPDGERWLTIAKKLEGLPRHTSIHAAGVIISPDPLMRHVPLQPS-HGEWPLTQYAMG 523 Query: 545 DVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSE 604 +E GL+K DFLGLRTLT++ + +I ++ K P D+ A+PLDD+K++ +L + Sbjct: 524 ALEALGLLKIDFLGLRTLTLLGQMVRLIERQTGK----PFDVRALPLDDEKTYALLSAGD 579 Query: 605 TTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYP 664 T+ VFQLES GMK ++ L+P E+++A+ AL+RPGP+ M+ +I RK G E ISY Sbjct: 580 TSGVFQLESSGMKRVLAELRPATLEEIVAVNALYRPGPM--NMIPTYIRRKRGEEAISY- 636 Query: 665 DVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQR 724 H L+P+L PTYG+++YQEQ+MQIA ++G++LG AD+LRRA+ KK+ +A+ R Sbjct: 637 ----LHPDLEPILAPTYGVLIYQEQIMQIAARIAGFSLGKADVLRRAVAKKEKALLAEHR 692 Query: 725 SVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMA 784 F G NG A +A +++ + +FA YGFN+SH+ +Y L+SY ++KAHYP F A Sbjct: 693 EAFVAGCVANGYPAPMAEELYRQIVRFADYGFNRSHAVSYTLLSYALAYIKAHYPLCFYA 752 Query: 785 AVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEG 844 +++ + EK+V E R G+ +LPP +N Y F V + I G+ +K VG Sbjct: 753 VMLSNASGDREKMVLYSYEAARKGIALLPPSVNRSGYRFAVEGE-AIRAGLATVKHVG-S 810 Query: 845 PIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGD 904 + II+ R + G F + FD R K L R LE LI +GAFD LG R +L+ S+ Sbjct: 811 AAKLIIDERKENGPFADFFDFAVRLLPKGLARSALEALISAGAFDELGEERGSLLASIEI 870 Query: 905 ALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGH 964 A++ G + + YA P E+E LG +T H Sbjct: 871 AIEHVQLMRPYLEAGGLSL-----------KPKYADAPPLSPAERRQREKELLGFAVTPH 919 Query: 965 PINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSG 1024 P + + + V V ++ G + G + R TK G + T+ D SG Sbjct: 920 P-AAVCRPLFQAVRAVPAAEV----HGSPVVVGGCIAELRKTRTKFGEEMAFITVSDESG 974 Query: 1025 RLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGL 1084 LE + F + LE+ ++++G V D +G ++ R + + Sbjct: 975 ELEAVAFPSVYARAAGELEEGNFVLLAGTV--DMRAGRRQLVLRRAERLPTSA------- 1025 Query: 1085 AISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLN 1144 + + D L+ L+ LE HR G+ PV+LY R+ LR + V+ + L++ Sbjct: 1026 -LYIHASLADRSRLSALKLLLEQHR-GSTPVYLY--DETKRSLLRLPERYGVALTAPLID 1081 Query: 1145 DLRGLIGSEQVELE 1158 +L L G+ ++ ++ Sbjct: 1082 ELIALFGARRLAVK 1095 >UniRef50_Q9K838 DNA polymerase III subunit alpha n=1 Tax=Bacillus halodurans RepID=DPO3A_BACHD Length = 1116 Score = 1143 bits (2958), Expect = 0.0, Method: Composition-based stats. Identities = 404/1154 (35%), Positives = 652/1154 (56%), Gaps = 51/1154 (4%) Query: 7 VHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIV 66 VH+ VHS+Y+++ + + LV+KA A ALA+TD + G V FY A +G+KPI+ Sbjct: 4 VHIHVHSEYTLLSSMCRIPALVEKAKAAQFSALALTDRHVMYGAVPFYKACKESGLKPII 63 Query: 67 GADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNE 126 G + V+ D + L + A +N GY++L L + R + + L+ + Sbjct: 64 GMETTVRFAE--DRESDLLLYARSNKGYEHLLKLSTIIQCREEKEKY--VTWEELLAYKD 119 Query: 127 GLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRTGRPDEESYLHAA 185 L+ + G V L + + F ++H + +LE+ T R E Sbjct: 120 DLLYVIPYSGGFVRACLEDEALERGERFIQFLKDHLGGESVYLEIQGTDRSKVEPIN--- 176 Query: 186 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 245 +LA +P+V + ++ ++ D DA ++ AI +G +++ + + E Sbjct: 177 -QLAAKLAIPLVCSQHIQVLEREDLDAWKVIQAIREGVLVEELR--IEQEEDVCFFTLTE 233 Query: 246 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKRAKEGLEERL 304 M + F PEAL NT ++A RC+V + LG+ LP+F T + S EDYL K ++G +ER Sbjct: 234 MEQTFRAYPEALQNTKKLADRCHVELTLGKPRLPKFQTPNEQSAEDYLRKLCEQGAKERY 293 Query: 305 AFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGS 364 + E +RL EL VI +MGF YFLIV +F++++++ + GPGRGS Sbjct: 294 GE---------EWTKEKAQRLGEELAVIERMGFSDYFLIVWDFMRFAREASIVTGPGRGS 344 Query: 365 GAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGR 424 AGSLVAY L ITD+DPL +DLLFERFLNPER+S+PD D+DF +R++VI +V YG Sbjct: 345 VAGSLVAYVLFITDVDPLHYDLLFERFLNPERISLPDIDLDFPDHRREEVIVYVKKKYGA 404 Query: 425 DAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEI 484 + V+QI+TFGT+AA+A +RDVG+ L P +++ISK I PGMTL KA+ +L ++ Sbjct: 405 NRVAQILTFGTLAARASVRDVGKALAIPPNVIEKISKEISGRPGMTLVKAYNENERLRQL 464 Query: 485 YEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKS 544 A +E + ++ +ARK+EG+ R+ HA GVVI+ +T+ L + G+ P+TQ Sbjct: 465 VHASDEAQKVMKLARKVEGLPRHTSTHAAGVVISEQPLTEVIALQHGQ-GEVPLTQGTME 523 Query: 545 DVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSE 604 VE GL+K DFLGLR LT++ ++ + + L++ +PL+D K+F +L + E Sbjct: 524 TVEDVGLIKMDFLGLRNLTLLEMVVKRVRETYG----HSLNVKQLPLNDAKTFALLAKGE 579 Query: 605 TTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYP 664 TT VFQLES GM+ +++ L+P+ F D++A+ AL+RPGP++ + ++I K G +EI+Y Sbjct: 580 TTGVFQLESGGMRKVLRELKPNTFADIVAVNALYRPGPME--FIPDYIQGKEGTKEITY- 636 Query: 665 DVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQR 724 H L+P+L TYG+I+YQEQ+MQIA ++G++LG AD+LRRA+ KKK E + +Q Sbjct: 637 ----LHPDLEPILSSTYGVIVYQEQIMQIAAKMAGFSLGEADLLRRAISKKKGEALRQQE 692 Query: 725 SVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMA 784 F GA + G E A KI++L+ +FA YGFNKSH+ AY++++YQ +LKAHYP+ F A Sbjct: 693 EAFVTGAVRQGYEQETAKKIYELIVRFANYGFNKSHAVAYSMLAYQLAYLKAHYPSSFYA 752 Query: 785 AVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEG 844 A+ + + EK+ L+ E + G+++LPP ++ HF ++G + + + ++ V Sbjct: 753 ALASTIWNQPEKLERLLQEMKQQGIRVLPPSLSKSDIHFSEEEEG-VRFPLLPLRYVSVR 811 Query: 845 PIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGD 904 I +I+AR + R LFDLC+R D + + RV+E LI +GA D LG RA L+ ++ + Sbjct: 812 AIRELIKARREA-PVRSLFDLCSRVDGRIVTSRVMESLIKAGALDELGE-RATLLANIEE 869 Query: 905 ALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGH 964 A + A+Q + + +F + E E Y +P + L E+E +G YL+GH Sbjct: 870 AFQFAEQVKEFQEN-TGGLFQLSVE-----EPEYIKVEPLTDLEKLAYEKEAVGFYLSGH 923 Query: 965 PINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSG 1024 P+ Y + + +Y L + + AG++ R + TKRG +G T+ D +G Sbjct: 924 PLLAYTESLRQYDRLTYL----EGTERRFVKLAGMIHRIRRIRTKRGEVMGFLTMSDETG 979 Query: 1025 RLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGL 1084 E ++F Y+ L++ + V G++ S L++ +V+ + +K L Sbjct: 980 EWEAVVFPAVWAMYEWGLKEGELYFVEGKMDRG-RSEELQLLVDKVLPLKHMLKKEKEKL 1038 Query: 1085 AISLTDRQIDD-QLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLL 1143 + +T + + LN +R+ L+ H G PV +YY+ R ++ + VS S LL Sbjct: 1039 FLKITADVEKEVERLNDIRRLLQVHH-GPTPVVMYYE--KQRKTIQLPEKYHVSLSFTLL 1095 Query: 1144 NDLRGLIGSEQVEL 1157 ++L L+G E V + Sbjct: 1096 HELEQLVGKEHVVV 1109 >UniRef50_C6XJW1 DNA polymerase III, alpha subunit n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XJW1_HIRBI Length = 1145 Score = 1143 bits (2958), Expect = 0.0, Method: Composition-based stats. Identities = 461/1162 (39%), Positives = 671/1162 (57%), Gaps = 38/1162 (3%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 + +PRFVHLRV S S++ + L K G PA+AITD N+ G ++ Sbjct: 10 LDKPRFVHLRVRSALSLLGSMITIKKLCKWTFENGFPAVAITDDNNMFGALELSETLAPM 69 Query: 61 GIKPIVGADFNVQCDLLGD-ELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRD 119 G++PI+ ++ + E T L + A N GY+N+ +L +K + + D Sbjct: 70 GVQPIIAITLHIYDRINPAAEPTELALFAQNEAGYKNMMILTTKGFLESPSGGTG-VYLD 128 Query: 120 WLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEE 179 ++E +EGLI +GG G+V + G+ E + E FP+R ++EL R GR E+ Sbjct: 129 DVLEHSEGLICTTGGGNGEVTQLCAAGDEEGAREYLLKLNEAFPNRLYVELQRHGRLTED 188 Query: 180 SYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQY 239 V+LA LP+VATN+ RFI + AH+ + I + RP+ SP+QY Sbjct: 189 KAEELLVDLAYELDLPLVATNEARFIKRAQHKAHDALLCIAGSTYVSVQDRPK-ASPEQY 247 Query: 240 MRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKEG 299 M++EEEM LF+D+PEA+ NT EIA+RC+ + LP F D + L ++A+EG Sbjct: 248 MKTEEEMINLFSDLPEAIENTCEIARRCSYRPAWRKPILPNFTGDDGDEGEELDRQAREG 307 Query: 300 LEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVG 359 L+ RL+ EEE++ Y +RL+ EL +I QMGFPGYFLIV +FI+W+K++ +PVG Sbjct: 308 LKMRLSSGILYEEEQV-----YWDRLDFELNIIRQMGFPGYFLIVSDFIKWAKEHDIPVG 362 Query: 360 PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVA 419 PGRGSGAGSLVA+ L ITDLDPL F LLFERFLNPERVSMPDFDVDFC ++R +VIE+ Sbjct: 363 PGRGSGAGSLVAWVLTITDLDPLRFGLLFERFLNPERVSMPDFDVDFCQDRRHEVIEYTK 422 Query: 420 DMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEA 477 YG D V+ IIT+GT+ AKAVIRDVGRV P+G VD++SKLIP +P TL +A + Sbjct: 423 RKYGADRVAMIITYGTLQAKAVIRDVGRVHQLPFGQVDKLSKLIPFNPANPPTLQEAIDG 482 Query: 478 EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHP 537 EP+ + +E+V+ L++ A +LEG+ RNAG HA GVVI + + +PLY D + P Sbjct: 483 EPKFKQEMRENEDVRNLVETALELEGLYRNAGTHAAGVVIGDRPLVELSPLYKDPKSDIP 542 Query: 538 VTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSF 597 TQF+ E+ GLVKFDFLGL+TLT+I AL+ + K DD++++ Sbjct: 543 ATQFNMKWAEHNGLVKFDFLGLKTLTVIQRALKFV-ISEGKQLTEKWHT----FDDEEAY 597 Query: 598 DMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHG 657 +L ET VFQLES GM+D +++++PDC ED+IAL++L+RPGP++ +D ++ RK G Sbjct: 598 KLLSSGETLGVFQLESTGMRDTLRKVKPDCIEDIIALISLYRPGPMK--NIDTYVARKEG 655 Query: 658 REEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKP 717 REEI Y H+ LKPVLE TYG+I+YQEQVM+IAQ+L+GY+LG AD+LRRAMGKKKP Sbjct: 656 REEIDY-----LHDDLKPVLEETYGVIVYQEQVMRIAQILAGYSLGEADLLRRAMGKKKP 710 Query: 718 EEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAH 777 EEM KQ+ F EGA K ++ E A IF+LV +FAGYGFNKSH+AAYA+++YQT +LKA Sbjct: 711 EEMLKQKVRFLEGAAKKDVSKERAEFIFELVNEFAGYGFNKSHAAAYAVIAYQTAYLKAK 770 Query: 778 YPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGA 837 +P EF+A M+ D+ NTEK+ E R+ + ++ PDI F V D +I Y +GA Sbjct: 771 HPVEFLAGSMSLDLTNTEKLAAFFQETKRLKIPVVTPDITLCNADFDV-RDQKIYYALGA 829 Query: 838 IKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAA 897 +KGVG+ + + ARN+ F +LFD R D +++N+RV + L G FD+L +RA Sbjct: 830 VKGVGKEAMLDVERARNE-KPFEDLFDFAERVDPRQINKRVYQALSKCGGFDQLEKNRAK 888 Query: 898 LMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETL 957 + ++ + Q +FG + + PW + +LD E ++ Sbjct: 889 AFEASEMLAAMSNAANRDRNSNQNSLFG----DEPPMRPKLPKAAPWSSEKILDYELSSV 944 Query: 958 GLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLV-VAARVMVTKRGNRIGI 1016 G YL+GHP++ L+ R + + M + G+V V G + Sbjct: 945 GFYLSGHPLDDILEGPARERIVLSSQMMELGRERAALEMIGVVKVRVEKPSMSGGGKFAY 1004 Query: 1017 CTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEA 1076 TL D SG E+ + + L + + E + V +V D L+ + +D+A Sbjct: 1005 ITLSDPSGEYELFVAPETLAETRDYFEVGSRVNVHVKVRRKD--DELRFSVDGARPLDKA 1062 Query: 1077 REKYARGLAISLTDRQIDDQLLN---RLRQSLEPHRSGTIPVHLYYQRADARARLRFGAT 1133 L + + D +QL + +LR+ G I V + + L Sbjct: 1063 ALGAPAKLCVRVGDLASMEQLAHVAVQLREV-SSQTIGIIQVEIPLED-QRLITLELDGH 1120 Query: 1134 WRVSPSDRLLNDLRGLIGSEQV 1155 + + ++ L+ ++G E+V Sbjct: 1121 YPMDY--AAMSALKSVVGVERV 1140 >UniRef50_A6LHM2 DNA polymerase III alpha subunit n=46 Tax=Bacteroidales RepID=A6LHM2_PARD8 Length = 1267 Score = 1143 bits (2957), Expect = 0.0, Method: Composition-based stats. Identities = 405/1293 (31%), Positives = 646/1293 (49%), Gaps = 164/1293 (12%) Query: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGA------- 56 F+HL VH+ YS++DG A L+ KA GM A+A+TD + G+ +F+ Sbjct: 2 EPFIHLHVHTQYSLLDGQASIDALIDKAYKDGMRAIAVTDHGVMFGIKEFFNKVSKKNSK 61 Query: 57 --------------------------------------GHGAGIKPIVGADFNVQCDLLG 78 + KPI+G + + Sbjct: 62 PLGIIKDSEKELKPLLAKDAPTDEEQQRITELQKQIAEAKASIFKPIIGCECYCARNGRH 121 Query: 79 DE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEGLIL 130 + HL VLA N GY+NL ++S ++ G+ P ID++ L + +E LI+ Sbjct: 122 SKLASQDDRSGWHLIVLAKNKNGYKNLIKMVSLSWTEGF-YGRPRIDKELLEKYHEDLII 180 Query: 131 LSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGR----------PDEES 180 S G++ + ++ G +E + +++ F + Y+LE+ R P ++ Sbjct: 181 CSACLGGEIPQHIMHGRIDKAEESIKWFKNLFGEDYYLEMQRHETHDPNADCTIFPHQQE 240 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 +ELA + ++ATNDV F+++ D +AH+ + + G LDDPKR R YS Q++M Sbjct: 241 VNKVLIELAHKHNIKLIATNDVHFVNADDAEAHDRLICLSTGKDLDDPKRMR-YSKQEWM 299 Query: 241 RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMS------------- 287 ++ EM +FADIPEAL+NT+EIA + +P F + Sbjct: 300 KTTAEMNTIFADIPEALSNTLEIADKIEFYSIDSGPIMPTFAIPEEFGTEESYRQKLTEH 359 Query: 288 ---------------------------------------TEDYLVKRAKEGLEERLAFLF 308 DYL K +G +E Sbjct: 360 DLFEEFTRDENGNVVLSEEEAHSKIKKLGGYDKLYRIKLEADYLAKLTYDGAKELYGDPL 419 Query: 309 PDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDN-GVPVGPGRGSGAG 367 D E ERL EL ++ MGFPGYFLIV +FI+ +++ GV VGPGRGS AG Sbjct: 420 ND---------EVKERLNFELHIMKTMGFPGYFLIVQDFIRAAREELGVSVGPGRGSAAG 470 Query: 368 SLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAV 427 S VAY L IT +DP+++DLLFERFLNP+R+S+PD D DF + R +V+ V + YG + V Sbjct: 471 SAVAYCLGITKIDPIKYDLLFERFLNPDRISLPDIDTDFDDDGRGEVLRWVTEKYGAERV 530 Query: 428 SQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL----IPPDPGMTLAKAFEAEPQLPE 483 + IIT+GTMA K+ I+DV RV P +R++KL IP L A + P+L E Sbjct: 531 AHIITYGTMATKSAIKDVARVQKLPLSESNRLAKLVPDKIPDMKKFKLGDAIKYVPELKE 590 Query: 484 IYE-ADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEE----GKHPV 538 D + + A+ LEG RN G HA GV+I I+D P+ ++ + V Sbjct: 591 AANGNDPLARDTLKYAQMLEGNVRNTGVHACGVIIGRYDISDVVPVSTAKDKDTGEEMLV 650 Query: 539 TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598 TQ++ S +E GL+K DFLGL+TL+II A+E + + LDI I L+D K++ Sbjct: 651 TQYEGSVIEETGLIKMDFLGLKTLSIIKEAIENVKLTTGHD----LDIDHISLEDPKTYK 706 Query: 599 MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658 + +TT FQ ES GM+ +K LQP FED+IA+ AL+RPGP+ + +FI RK G+ Sbjct: 707 LYCDGKTTGTFQFESAGMQKYLKELQPSKFEDLIAMNALYRPGPMD--YIPSFIARKQGK 764 Query: 659 EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718 EEI Y ++ L+ TYGI +YQEQVM ++++L+ +T G +D LR+AMGKK E Sbjct: 765 EEIKY-----DIPVMERYLKDTYGITVYQEQVMLLSRLLANFTRGESDALRKAMGKKLIE 819 Query: 719 EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778 +M +S F G + NG E KI+ EKFA Y FNKSH+ Y+ V+YQT +LKA++ Sbjct: 820 KMNHLKSKFMAGGQANGYKEETLNKIWSDWEKFASYAFNKSHATCYSWVAYQTAYLKANF 879 Query: 779 PAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAI 838 P+E+MAAV++ + N + +DEC MG+++L PD+N + F V+ + I +G+GA+ Sbjct: 880 PSEYMAAVLSRSLSNITDITKFMDECKAMGIQVLGPDVNESILKFSVDKNKNIRFGLGAV 939 Query: 839 KGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAAL 898 KGVGE ++ IIE R K G ++ +FD R + N++ +E + ++GAFD G R Sbjct: 940 KGVGESAVQNIIEERKKNGPYKSIFDFVERVNLTACNKKNIESMALAGAFDNFGIQREQF 999 Query: 899 MNS-------LGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLD 951 L ++ +++ ++ +FG A + C+ W + L+ Sbjct: 1000 FTDSGKGELFLDTLVRYGNKYQMDKSTAVNSLFGGDA-LIAIAKPEIPQCERWSDLERLN 1058 Query: 952 GERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTER--GKVITAAGLVVAARVMVTK 1009 E+E +G+YL+ HP+++Y I +YV + +++ E G+ + G+V R +TK Sbjct: 1059 KEKELVGIYLSAHPLDEYR-IILKYVCNTGMVELNERETLQGREVLLGGIVTGFREGMTK 1117 Query: 1010 RGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVS-FDDFSGGLKMTAR 1068 G GI ++D +G E+ LF +Y + + L+++ +V L Sbjct: 1118 NGKPYGILKIEDFTGSGEIPLFGQDYIEYSKYGKIGMYLLITARVEPSRWDPNKLDFKIG 1177 Query: 1069 EVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARL 1128 V + + ++K ++I++ +D+ +N L L + G ++ + L Sbjct: 1178 TVNLLQDEKDKLIEKISITVPIHDLDEPTINELS-VLIKNNPGHSLLYFKVVDGEHNISL 1236 Query: 1129 RF-GATWRVSPSDRLLNDLRGLIGSEQVELEFD 1160 R++ + L++ L+ +E ++ + + Sbjct: 1237 NLFSQNIRLNVTRELVDFLQE---NENIDFKIN 1266 >UniRef50_A8VX11 DNA polymerase III, alpha subunit n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VX11_9BACI Length = 1126 Score = 1141 bits (2953), Expect = 0.0, Method: Composition-based stats. Identities = 403/1144 (35%), Positives = 622/1144 (54%), Gaps = 51/1144 (4%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 + HL VH+++S++ L + L ++A++ G ALA+TD N+ G V FY A GIKPI Sbjct: 3 YAHLHVHTEFSLLSSLIRIDDLTEQASSQGFTALAMTDLNNIYGAVSFYRACRARGIKPI 62 Query: 66 VGADFNVQC---DLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLI 122 +G + +++ + D T L + A + GYQ+L L++ A A P + D L Sbjct: 63 LGVELSMERLSLNSGRDVPTSLLLYAKSFRGYQSLVRLVTMA---CAREAEPYVTMDELE 119 Query: 123 ELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPD-RYFLELIRTGRPDEESY 181 E L+++S G + G + F + ++E+ E Sbjct: 120 AEGEELVVISPFSEGRMQLLAEEGRDEEASAFLKTIRNVFGEEDVYVEIQNHWLRWERER 179 Query: 182 LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241 + + +PVVATN V ++ F A + AI DG +++ P Y++ Sbjct: 180 MQRIRKWLTNERVPVVATNHVHALEPDQFGALQTLQAIKDGVRIEEIDESLRA-PDMYLK 238 Query: 242 SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKRAKEGL 300 +EEEM E FA AL T EI +C V + LG LP +P D + L ++GL Sbjct: 239 NEEEMREQFAKWNTALDVTEEIVAKCEVELPLGGQILPSYPVSDGETAASLLRNWCEKGL 298 Query: 301 EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360 ER ++ ERLE ELQVI+ MG+ YFLIV +F+ ++ NG+ GP Sbjct: 299 YERY----------HAPEEKHRERLEKELQVIHDMGYEDYFLIVADFMDYAHRNGILTGP 348 Query: 361 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420 GRGS AGSLVAY L+ITD+DP+ +DLLFERFLNPERVSMPD D+DF RDQVI +V + Sbjct: 349 GRGSAAGSLVAYLLRITDVDPILYDLLFERFLNPERVSMPDIDIDFSDLDRDQVIHYVHE 408 Query: 421 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQ 480 YG V+QI+TFGT+AAKA +RD RVLG P VDR+SKLIP P MT+ A E P Sbjct: 409 RYGASKVAQIVTFGTLAAKAALRDTARVLGIPTADVDRLSKLIPARPNMTITAALEEAPA 468 Query: 481 LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQ 540 + + L+ A +EG+ R+ HA GVV++ +TD PL +G +TQ Sbjct: 469 FNKAIREMPKGDLLLKTALDIEGIARHTSIHAAGVVMSKDPLTDIVPLQPSNDG-LTITQ 527 Query: 541 FDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDML 600 F D+E GL+K DFLGLR L+ + E + ++ LD+ +PL+D++ F +L Sbjct: 528 FPMGDLEDLGLLKMDFLGLRNLSFMERIAETVKEKTG----EALDLTRLPLEDERMFALL 583 Query: 601 QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE 660 + ET +FQLES+GM+ ++K+L+P+ FED++A+ AL+RPGP++ + +I RK+G E Sbjct: 584 GKGETNGIFQLESQGMRRVLKQLKPERFEDIVAVNALYRPGPMEQ--IPLYIRRKNGEEP 641 Query: 661 ISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM 720 ++YP HE L+ +L PTYG+++YQEQ+MQIA ++G++L ADMLRRA+ KKK EE+ Sbjct: 642 VTYP-----HEDLREILAPTYGVMIYQEQIMQIASKMAGFSLAEADMLRRAVSKKKKEEL 696 Query: 721 AKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA 780 + R++F EGA G + A ++++L+E+FA YGFN+SH+ AY+++S + WLK +P Sbjct: 697 ERSRTLFVEGAVGRGYAEDEATRVYELIERFANYGFNRSHAVAYSMISCRLAWLKTVHPE 756 Query: 781 EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG 840 FMAA+M + +K+V + E +MGL++ P + F V ++GEIV + I+ Sbjct: 757 AFMAALMEQSVHAPDKLVRYIAEAKQMGLRVSGPSVQRSSRRFTV-NNGEIVMALQVIRH 815 Query: 841 VGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMN 900 G II AR + G F LFD C R K ++R+ +E LIM+GA D G R +L Sbjct: 816 TGHHAAAEIIRAREEEGPFGSLFDFCKRVSLKIVSRKTVESLIMAGAMDDFGVDRTSLFA 875 Query: 901 SLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLY 960 SL DA + D+ A+ G E E+ E Y LD ERE +G Y Sbjct: 876 SLEDAFQFGDEDAE----------GFSLFEQEEGEPDYRQGGRMTLMDKLDEEREVMGFY 925 Query: 961 LTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLD 1020 L+GHP+ L+ ++ Y L+ M + AG++ R++ TK+G+++ ++ Sbjct: 926 LSGHPVEDDLELLKTYKRQSILEAMGVASEKMTVRLAGMIEHIRLIRTKKGDQMAFVSMS 985 Query: 1021 DRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREK- 1079 D +G +++ +F + L YQ L+K+ ++ G++ + + + + + ++ R + Sbjct: 986 DETGAMDITVFPEQLKHYQMALKKNGLIFTEGKMQW--RNDAWNLILDKAVSLETLRSRV 1043 Query: 1080 ---YARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRV 1136 L I + Q + + N++ L G +PV L ++ + W V Sbjct: 1044 KEEAQPTLYIRFSHAQEKEGVPNKVEALL-QDTPGEVPVVLKFESTGEVR--KLSELWNV 1100 Query: 1137 SPSD 1140 + Sbjct: 1101 KVDE 1104 >UniRef50_Q2G7G3 DNA polymerase III, alpha subunit n=2 Tax=Alphaproteobacteria RepID=Q2G7G3_NOVAD Length = 1215 Score = 1137 bits (2941), Expect = 0.0, Method: Composition-based stats. Identities = 443/1205 (36%), Positives = 636/1205 (52%), Gaps = 69/1205 (5%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M FV LR+ S Y+M+DG + K AA G PA AITD L G V + A Sbjct: 20 MPHAAFVPLRIFSSYTMLDGAIDPKAIAKTAAERGFPAAAITDRNGLYGSVAYAKACKDM 79 Query: 61 GIKPIVGADFNVQCDLLGDELT----------HLTVLAANNTGYQNLTLLISKAYQRGYG 110 G++P++G V T L + A + GY NL L+S+A+ Sbjct: 80 GVQPVIGTMLAVARPERDGAATGFGPAAPTIDWLALYAQDARGYDNLCHLVSRAHLDRPL 139 Query: 111 AAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170 P + L+ +GLI L+ G + + L G + + V E FP+R ++E+ Sbjct: 140 EFAPHVVLADLVGHTDGLICLTAASEGALAQLLAGGQQSAAEAYVDRLLELFPERLYIEI 199 Query: 171 IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230 R EE+ A ++LA AR LP+VATN F + + +DAH+ + I +D R Sbjct: 200 ARRNDAVEEASETALIDLAYARDLPLVATNPACFAERTFYDAHDAMLCIASSTHVDSADR 259 Query: 231 PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTED 290 PR S + +++ M ELF D+PEALANT+ +A+RC V + LP Sbjct: 260 PR-SSKEWWIKPAAVMEELFKDLPEALANTLVVAQRCAVMPPKRKPILPSLAGDQEGEAR 318 Query: 291 YLVKRAKEGLEERLAFLFPDEEERLKRR---------------------------PEYDE 323 + +++GL RL +P+ R +Y + Sbjct: 319 MCAEDSRKGLVLRLEPYYPESTHAELARVLCLGPDAEPVAADHPQLVEAGVWEEVLDYRK 378 Query: 324 RLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLE 383 RLE E+ +IN+MGF GYFLIV +FI+W+K++G+PVGPGRGSGAGSLVA+AL ITDLDP++ Sbjct: 379 RLEFEIAIINRMGFGGYFLIVADFIKWAKEHGIPVGPGRGSGAGSLVAWALTITDLDPIK 438 Query: 384 FDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIR 443 LLFERFLNPERVSMPDFD+DFC +R +VI +V YG D V+QIITFG + A+AV+R Sbjct: 439 LGLLFERFLNPERVSMPDFDIDFCETRRGEVIRYVQRKYGEDHVAQIITFGKLKARAVLR 498 Query: 444 DVGRVLGHPYGFVDRISKLIPPDP--GMTLAKAFEAEPQLPEIYEADEEVKALIDMARKL 501 D GR+L YG DR+ K++P P L +A +L Y+ D EVK LID+A +L Sbjct: 499 DTGRILQMSYGQTDRLCKMVPNHPTDPWPLPRALNGVAELKREYDRDPEVKRLIDLAMQL 558 Query: 502 EGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRT 561 EG+ RN+ HA GVVI + PLY D PVTQFD VE AGLVKFDFLGL+T Sbjct: 559 EGLPRNSSTHAAGVVIGDRPLAQLVPLYRDPRSDMPVTQFDMKHVEDAGLVKFDFLGLKT 618 Query: 562 LTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIK 621 L+++ A++++ KR +D++A+P DD++++ +LQ +T VFQLES GM+ + Sbjct: 619 LSVLRKAVDLMKKR-----SIEIDLSALPWDDEQTYKLLQSGDTVGVFQLESEGMRRTLA 673 Query: 622 RLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTY 681 ++P F D+IALV+L+RPGP+ + F RK+G E I YP H+ L +L TY Sbjct: 674 AVKPTNFGDIIALVSLYRPGPMD--NIPLFGRRKNGLEAIEYP-----HDKLAGILSETY 726 Query: 682 GIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEK-NGINAEL 740 GI +YQEQVMQ AQ+L+GY+LG AD+LRRAMGKK EM QR F +G ++ +GI A Sbjct: 727 GIFVYQEQVMQAAQILAGYSLGDADLLRRAMGKKVQAEMDAQRQRFVDGCKEVSGIPAAK 786 Query: 741 AMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGL 800 A ++FDL++KFAGYGFNKSH+AAYAL++YQT WLK HYP EF AA M DM +EK+ Sbjct: 787 ANELFDLIDKFAGYGFNKSHAAAYALLAYQTAWLKTHYPHEFYAAAMCFDMHQSEKLSVF 846 Query: 801 VDECWRMGLKILPPDINSGLYHFHVN---DDGEIVYGIGAIKGVGEGPIEAIIEARNKGG 857 VD+ R G+ + PDIN F V D + Y + ++ VGE +E I+E R G Sbjct: 847 VDDMRRNGVALAGPDINHSEAEFTVERTHDGYAVRYALAGLRNVGEKAMEQIVEEREANG 906 Query: 858 YFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEA 917 F L DL R +NRR LE L GA D L P+RA ++ + + A++ +++ Sbjct: 907 PFASLDDLFRRIPAGSMNRRQLEALAAGGALDCLEPNRAQIIANAELLMAVAEEASRSRT 966 Query: 918 IGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIER-- 975 GQ +FG ++ + +PW + ERE G Y HP+ +Y Sbjct: 967 SGQGGLFG--GDDHATPATRLSDTKPWSRADQMAAERENFGFYFAAHPVEEYRAVASANG 1024 Query: 976 YVGGVRLKDMHPTERGKV-ITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDA 1034 L G+ A LV + TK+G + D SG F ++ Sbjct: 1025 ARSYGSLMTSSGEPGGRSGAVMAALVENVQKRKTKKGKDFVMADFSDSSGLFSASCFEES 1084 Query: 1035 L-DKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQI 1093 L + +QQ + ++++ ++ + ++T R + A + + L + Sbjct: 1085 LVEPFQQWAREGTCVLLNVELDRPNPDEPPRVTVRGARPLASV--TSASRMVLKLDVSRT 1142 Query: 1094 DDQLLNRLRQSLEPHRSGTIPVHLYYQRADARA-RLRFGATWRVSPSDRLLNDLRGLIGS 1152 + ++ L L G V + + +R G + + L+ L + G Sbjct: 1143 --EAISDLAMLLPRRPDGKGEVLARLRTGGPKEPLVRLGNDFILD--SDLIERLIPIEGL 1198 Query: 1153 EQVEL 1157 V L Sbjct: 1199 ANVAL 1203 >UniRef50_Q83I40 DNA polymerase III alpha subunit n=2 Tax=Tropheryma whipplei RepID=Q83I40_TROW8 Length = 1164 Score = 1132 bits (2928), Expect = 0.0, Method: Composition-based stats. Identities = 414/1189 (34%), Positives = 646/1189 (54%), Gaps = 65/1189 (5%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS FVHL VH+DYSM+DG A+T L++KAA MPA+AITD N G F+ Sbjct: 5 MS---FVHLHVHTDYSMLDGAARTEDLMRKAAEDKMPAIAITDHGNTFGAFDFWKTAKTY 61 Query: 61 GIKPIVGADFNVQCDLLGDE-------------------LTHLTVLAANNTGYQNLTLLI 101 I PI+G + + E THLT+L+ NN G NL L Sbjct: 62 DINPIIGMEAYLTPGTNRKEKVRKFFASGGPDDVSAGGAYTHLTLLSQNNEGMHNLFKLS 121 Query: 102 SKAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEH 161 S A GY P ID + L + + GLI +G G++ L G + + A + Sbjct: 122 SLASIEGY-YFKPRIDIELLNQYSNGLIATTGCPSGEIQTRLRLGQYSEARQAAAQMRDI 180 Query: 162 F-PDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIH 220 F P+ Y+ E++ E++ + + LA GLP++ATND+ +++S D +H + + Sbjct: 181 FGPENYYCEVMDHNLEIEKAVMPDLLRLAGDLGLPLLATNDLHYVNSEDSASHAALLCVQ 240 Query: 221 DGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQ 280 G T++DP R + S + Y++S EM LF D+PEA NT+ +A+RC++ F+P+ Sbjct: 241 SGSTINDPNRFKFDSDEFYLKSSSEMRILFEDLPEACDNTLLVAERCHINFDTQRSFMPR 300 Query: 281 FPTGDMSTE-DYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPG 339 F + TE + K G+ R E+ E E++V+ + G+ G Sbjct: 301 FSVPEGETENSWFASEVKRGIASRYPNGPSRR---------VIEQAEYEIRVVQEAGYAG 351 Query: 340 YFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSM 399 YFLIV +FI W+K NG+ VGPGRGSGA S+ AYA++ITDLDPLE L+FERFLNP R+SM Sbjct: 352 YFLIVADFINWAKLNGIRVGPGRGSGAASMAAYAMRITDLDPLEHGLIFERFLNPARISM 411 Query: 400 PDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRI 459 PDFD+DF +R +VI++V YG D V+QI+TF T+ AK ++D RVL +PY F +R+ Sbjct: 412 PDFDIDFDERRRGEVIDYVTKKYGSDHVAQIVTFATIKAKQALKDSARVLSYPYSFGERL 471 Query: 460 SKLIPP---DPGMTLAKAFEAEP-------QLPEIYEADEEVKALIDMARKLEGVTRNAG 509 +K +PP + L F+ ++ ++ E+D E++ + + A+ LE + R Sbjct: 472 TKAMPPAVMGREIPLRAIFDTTHSRHREASEVRQMIESDYEMQQIFNTAKGLENLKRQWA 531 Query: 510 KHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWAL 569 HA GV+++ I D P+ E H VTQFD + E GLVK DFLGLR LTII+ AL Sbjct: 532 VHAAGVIMSDAPIIDIIPIMKRESDGHIVTQFDYASCESLGLVKMDFLGLRNLTIIDDAL 591 Query: 570 EMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFE 629 I + + +D+ +PLDD + + +L+R++T VFQL+S ++ L++ +QPD F+ Sbjct: 592 ANIRQNK----NTKVDLENLPLDDPEVYKLLRRADTLGVFQLDSGPIRQLLELMQPDSFD 647 Query: 630 DMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQ 689 D+ A +AL+RPGP+ + N+ RK+ ++EI + + + L +L TYG+I+YQEQ Sbjct: 648 DISAAIALYRPGPMGARSHTNYALRKNRKQEIDHIHPE-LTKDLSVLLSSTYGLIVYQEQ 706 Query: 690 VMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVE 749 V+ IAQ L+G+TL AD+LR AMGKKK +E+ +Q + FA G K G + +++++ Sbjct: 707 VIGIAQKLAGFTLEEADVLRWAMGKKKKDELDRQYNKFANGMRKAGYSDGATEALWNVLL 766 Query: 750 KFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGL 809 F+ Y FNK+H+ AY L+SY T +LKAHYP E+MAA++T+ + +K+ + EC M + Sbjct: 767 PFSDYAFNKAHATAYGLISYWTAYLKAHYPTEYMAALLTSVETSRDKLGLYLQECRHMCI 826 Query: 810 KILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCART 869 K+L PDIN F + + I++G+GAIK VG I+ I+E R + G F L D R Sbjct: 827 KVLLPDINVSRSGFTPSGEN-ILFGLGAIKNVGANLIDDILEVR-EDGPFVSLIDFVQRM 884 Query: 870 DTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAE 929 LNRR + LI +GAFD + P+R +LM+ L+ +A+ + L + Sbjct: 885 PHSVLNRRSVMSLIQAGAFDSIHPNRRSLMDIHRSVLENCQANARRSD---VSLLDGLLD 941 Query: 930 EPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTE 989 E E W + L ERE LG+Y++ HP++ + ++ + + + Sbjct: 942 EYEGFSP--PDIPDWNNRERLKYEREMLGMYVSSHPLDGLEDSLLKFRDC-SIAECISRK 998 Query: 990 RGKVITAAGLVVAARVMVTKR-GNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRIL 1048 VI AGL+ + V +R G R L+D SG +++ML + + + L D I+ Sbjct: 999 PQDVIRVAGLITSVEHKVARRTGMRYAHAILEDTSGEIQIMLSGQNYNNFSEQLVTDSIV 1058 Query: 1049 IVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPH 1108 V+G++SF D + + D+ +++ L + ++ + + L L + Sbjct: 1059 SVTGRISFRD--DATTLYCDSIKDVLPVKKEA--RLRLKCSEGFLTQNVFIALDDVLRKY 1114 Query: 1109 RSGTIPVHLYYQRADARAR--LRFGATWRVSPSDRLLNDLRGLIGSEQV 1155 G PV + D F + V S+ L+ +++G++G E + Sbjct: 1115 -PGDTPVTMEVIITDNSVVKSKTFELSRCVEISNDLIAEVKGILGVEGI 1162 >UniRef50_A5FKC9 DNA polymerase III, alpha subunit n=26 Tax=cellular organisms RepID=A5FKC9_FLAJ1 Length = 1510 Score = 1131 bits (2926), Expect = 0.0, Method: Composition-based stats. Identities = 407/1221 (33%), Positives = 632/1221 (51%), Gaps = 106/1221 (8%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG--- 61 +F HL H+ +S++ +V A GMPA+A+TD N+ G F A Sbjct: 260 KFAHLHNHTQFSVLQSTIGIGNIVAATAKNGMPAVAMTDTGNMMGAFHFVSAVMNHNKAA 319 Query: 62 ------------------IKPIVGADFNVQCDL----LGDELTHLTVLAANNTGYQNLTL 99 IKPIVG +FN+ + D + +LA N GY NL Sbjct: 320 SGKNKALVEAGEEPTETEIKPIVGCEFNICENHLDKSKKDNGYQVVLLAKNKAGYHNLAK 379 Query: 100 LISKAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYE 159 + S AY G+ P ID++ + + +++LSG G++ +L +E + +++ Sbjct: 380 MASIAYTEGF-YYVPRIDKNIVEKYKGDIMVLSGNLYGEIPSKILNIGENQAEEALIWWK 438 Query: 160 EHFPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAI 219 E F + ++LE++R + DE +E ++ + ++ATN+ +++ D +AH+I + + Sbjct: 439 EQFGEDFYLEVMRHNQEDENRVNKTLIEFSQKHNVKLIATNNTYYLNKEDANAHDILLCV 498 Query: 220 HDGFTLDDP------KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRL 273 DG P R + + Y +SE EM +LFAD+PEA+ N E+ + Sbjct: 499 KDGEKQATPIGRGRGYRYGLPNQEYYFKSEAEMKKLFADLPEAIINIQEVIDKVEGYSLY 558 Query: 274 GEYFLPQFPTGDM----STED---------YLVKRAKEGLEERLAFLFPDEEERLKRRPE 320 + LP+F D E+ YL EG + R + Sbjct: 559 RDVLLPKFEIPDEFMVPEDEEDGGVRGENKYLRHLTMEGAKRRYGEI----------TES 608 Query: 321 YDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLD 380 ERL+ EL I+ G+PGYFLIV +FI ++ V VGPGRGS AGS VAY L IT++D Sbjct: 609 IQERLDFELMTISNSGYPGYFLIVQDFIAEARKMDVSVGPGRGSAAGSAVAYCLGITNID 668 Query: 381 PLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKA 440 P+++DLLFERFLNP+RVSMPD D+DF E R +V+++V + YG+ V+QIIT+G MA K+ Sbjct: 669 PIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMDYVINKYGQKQVAQIITYGKMATKS 728 Query: 441 VIRDVGRVLGHPYGFVDRISKLIPPDPGMTL------------------AKAFEAEPQLP 482 IRD RVL P DRI+KLIP + F+ +L Sbjct: 729 AIRDTARVLDLPLFEADRIAKLIPGMMPSKWNLARFISESEEEVKKALRSDEFDNVKELI 788 Query: 483 EIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFD 542 I D+ I A+ LEG RN G HA GV+I P+ IT++ P+ ++ VTQFD Sbjct: 789 AIANEDDLAGETIQQAKILEGSMRNTGIHACGVIITPSDITNYVPVTTAKDSDLYVTQFD 848 Query: 543 KSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQR 602 S E AGL+K DFLGL+TLT+I ++++ R + LD P+DD++++ + QR Sbjct: 849 NSVAESAGLLKMDFLGLKTLTLIKDTVKLVKYRTGID----LDPDNFPIDDEETYALFQR 904 Query: 603 SETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEIS 662 ET +FQ ES GM+ +K L+P F D+IA+ AL+RPGPL+ + +F+ RK+G EEI Sbjct: 905 GETVGIFQYESPGMQKYMKDLKPTVFGDLIAMNALYRPGPLE--YIPSFVRRKNGDEEIK 962 Query: 663 YPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAK 722 Y L TYGI +YQEQVM ++Q L+G+T G AD+LR+AMGKK+ + + K Sbjct: 963 YDLDACA-----EYLSETYGITVYQEQVMLLSQSLAGFTKGEADVLRKAMGKKQKDVLDK 1017 Query: 723 QRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEF 782 + F E A + G +A++ KI+ E FA Y FNKSHS YA ++YQT +LKAHYPAE+ Sbjct: 1018 MKPKFVEQAAQKGHDAKILEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEY 1077 Query: 783 MAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVG 842 MAAV++ +M++ ++V ++EC RMGL++L PD+N Y F VNDD + +G+GAIKGVG Sbjct: 1078 MAAVLSNNMNDIKQVSFFMEECKRMGLQVLGPDVNESYYKFTVNDDYAVRFGMGAIKGVG 1137 Query: 843 EGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRL-GPHRAALMNS 901 G +E I+E R K G ++ +FDL R D + N++ +E L ++G FD G RA + Sbjct: 1138 SGAVETIVENR-KDGRYKSIFDLAKRIDLRAANKKAIENLALAGGFDSFEGTTRAQYFHD 1196 Query: 902 -------LGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGER 954 A++ + + E Q +FG A E + E C+ W L E+ Sbjct: 1197 DGDGITFYEKAMRYGSKFQENENSSQVSLFGE-ASEVQIAEPVVPPCEDWSTMEKLAKEK 1255 Query: 955 ETLGLYLTGHPINQYLKEIERYVGG-VRLKDMHPTERGKVITAAGLVVAARVMVTKRGNR 1013 E +G+Y++GHP++ + E++ + + GK + AG++ + V K G Sbjct: 1256 EVVGIYISGHPLDDFRFEMKYFCNARLEALKSMNEYVGKNLNFAGIINNVQHRVAKNGKG 1315 Query: 1014 IGICTLDDRSGRLEVMLFTDALDKYQQLLEKDR-----ILIVSGQVSFDDFSGG-LKMTA 1067 L+ E +F + K++ L ++ ILI G V+ D +M Sbjct: 1316 WAAFNLEGYDESYEFKIFGEEYLKFRHFLIQNNFAFLKILIKDGWVNHDTGKKTDPRMQF 1375 Query: 1068 REVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPV---HLYYQRADA 1124 E+ + + E +A+ L + L + + + +++L ++ G V + ++ Sbjct: 1376 VEIRQLQDILEAFAKKLIVLLNIKDLHPEFIHKLSHLFNENK-GDNSVTFEIMELEKIKK 1434 Query: 1125 RARLRFGATWRVSPSDRLLND 1145 + + D + +D Sbjct: 1435 LVEVETPTDFE-DADDAVFDD 1454 >UniRef50_D1AIM1 DNA polymerase III, alpha subunit n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AIM1_SEBTE Length = 1122 Score = 1131 bits (2926), Expect = 0.0, Method: Composition-based stats. Identities = 408/1160 (35%), Positives = 663/1160 (57%), Gaps = 40/1160 (3%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M FVHL++H++YS+++G+ K + +A L + LA+TD + G+V+FY Sbjct: 1 MMREEFVHLKLHTEYSLLEGVGKIEEYLDRAKKLDIKQLAVTDT-AMFGVVEFYEKAFKK 59 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 GIKPI+G + + LT+LA N TGY+NL L S ++ R + + I + Sbjct: 60 GIKPIIGLEI-FMDGFFSEGEYSLTLLARNQTGYKNLCKLSSLSFSR-FNRSRNKIRYEE 117 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 180 L + +EGL +LSGG ++ S+L + + + F + +++E+ R ++ Sbjct: 118 LKKHSEGLFILSGGINSELTESILTYKYSEFKNIITKLVQDFGEYFYVEVPAAERLKDKV 177 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 L +E+AE VA NDV + + D +I ++I DG ++ Y+ Y+ Sbjct: 178 KL--YIEMAEECNAEYVAANDVYYPNFGDSILQKIMISIKDGTKINSENTELKYND-LYL 234 Query: 241 RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTE-DYLVKRAKEG 299 +S E+M E F+ +A+ N+++IA+ CNV+ ++ P++ + +E +Y+ + +G Sbjct: 235 KSAEQMKENFSGYEKAIENSLKIARECNVSFEFDKFKFPEYNLPEGKSETEYIRELVYDG 294 Query: 300 LEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVG 359 L+++ + ER E EL +IN+MG+ GYF+IV +FI+++KDNG+ VG Sbjct: 295 LKKKYGEPL---------EEKITERAEYELDIINKMGYNGYFIIVWDFIKYAKDNGIYVG 345 Query: 360 PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVA 419 PGRGS AGS+V+YAL IT++DP++++L+FERFLNPER+SMPD D+DF E+R+QVI++V Sbjct: 346 PGRGSSAGSIVSYALNITEVDPIKYNLIFERFLNPERISMPDIDIDFDQEQREQVIDYVV 405 Query: 420 DMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEP 479 YG + V+ IITFGT+ A+A IRDVGRVL VD+++KLIP L A + Sbjct: 406 KKYGHEKVAHIITFGTLKARAAIRDVGRVLDINLKKVDKVAKLIPHF--SELEDAVKNVR 463 Query: 480 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 539 +L +Y +D EV+ +ID + KLEG R+A HA G+VI+ + D P Y D T Sbjct: 464 ELKTLYNSDSEVRDMIDYSLKLEGKVRHASVHAAGMVISKDVLDDEIPTYSDGRASFLST 523 Query: 540 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 599 Q+ ++E G++K DFLGL+ LTI+ +E I + K + + IPLDDK+++ M Sbjct: 524 QYQMKELEDLGILKMDFLGLKNLTILRKTMENIKITQGK----VMVLDDIPLDDKETYKM 579 Query: 600 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 659 L +T VFQ ES G++ L+++++ + FED++AL+AL+RPGPL+SGMVD+FI K+ Sbjct: 580 LTAGDTLGVFQCESIGIRRLMQKMKIEKFEDIVALLALYRPGPLRSGMVDDFIASKNEGA 639 Query: 660 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 719 I YP HE+L VL TYG+ILYQEQV++I VL+ YT+G D LRRAMGKK PE Sbjct: 640 AIKYP-----HEALIDVLSETYGVILYQEQVLKIVNVLANYTMGEGDSLRRAMGKKIPEL 694 Query: 720 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 779 MA+ R VF + A +N I + A +IF+L++KF+GYGF KSHS AYALV+Y T +LK +Y Sbjct: 695 MAQNREVFIKRAVENNITPDKAEEIFNLIDKFSGYGFPKSHSVAYALVAYWTAYLKTNYF 754 Query: 780 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 839 EF AA M+ +M N +++ ++E G+K+L PD+N Y F DG I +G+ AIK Sbjct: 755 KEFFAATMSTEMYNIDRLSLFINEARDKGVKVLLPDVNLSAYEFLAEKDG-IRFGLLAIK 813 Query: 840 GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 899 VG ++ +IE R K F D + LN++ LE + SG+ D++ +R + Sbjct: 814 HVGINIVKKVIEVR-KNEKFDSYEDFVYNLKKEGLNKKQLEAFVFSGSLDKIHNNRKEMF 872 Query: 900 NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 959 +S+ L+ ++ +E Q +FG +++ S + + E ++L+ E+E LG+ Sbjct: 873 SSIDRVLEWCEKKFNSEEDLQMILFGGKSQKIGL--FSMEKSEEYSESLLLEKEKEFLGV 930 Query: 960 YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKR-GNRIGICT 1018 YL+ HP++ Y + R + R+ + GK GLV + M+TK+ G + Sbjct: 931 YLSKHPLDNYK-LLMRTIDKTRMDSLKQ---GKRARVIGLVKDIKKMITKKTGEPMARFF 986 Query: 1019 LDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEARE 1078 ++D + EV+ F Y + +IV G VS D+ SG L + + + + E Sbjct: 987 VEDYGTKAEVVCFPRDYINYSHEIFDGNAVIVEGTVSSDN-SGRLNIHMTNISSLKDIDE 1045 Query: 1079 KYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSP 1138 + L I + + + ++++ + ++ G V+ A + ++ +RVS Sbjct: 1046 NHRLKLYILIDEE--TKGQMVQVKKVITENK-GPNQVYFAVNEAGKKEIIKLSEKYRVSI 1102 Query: 1139 SDRLLNDLRGLIGSEQVELE 1158 + + + +L L ++++++ Sbjct: 1103 TAKFIEELSQLFSYKKIKIK 1122 >UniRef50_Q6Q8S4 Predicted DNA polymerase III, alpha subunit n=1 Tax=uncultured marine gamma proteobacterium EBAC20E09 RepID=Q6Q8S4_9GAMM Length = 1148 Score = 1130 bits (2923), Expect = 0.0, Method: Composition-based stats. Identities = 491/1170 (41%), Positives = 703/1170 (60%), Gaps = 35/1170 (2%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS F HLRV S++S+ GL +V+ A+ L MP++A+TD +N+ G+VKF+ Sbjct: 1 MSHL-FSHLRVSSEFSISQGLLTIDQIVENASRLSMPSVALTDKSNMFGMVKFFNKCESV 59 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 GIKPI G D D+ + LA N G++NL +IS A+ PII D Sbjct: 60 GIKPISGVTIRTIFDG-DDKSYEILCLAKTNIGHKNLMKIISNAHNSNSF-NVPIIKFDD 117 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 180 LI L + ++++SGGR + L N ++ + + E F D + LE+ RT R DE Sbjct: 118 LISLKDDILIISGGRGTHIFEYLKINNFEDANKKIDKFRESFGDDFILEVQRTNRSDELE 177 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 Y + ++ + +P++ATNDV F D+D HE +V I+ G TL+DP R + +S QQY Sbjct: 178 YFKNILPISYEKNIPLIATNDVLFSSQDDYDTHETKVCINTGKTLNDPNREKLFSDQQYF 237 Query: 241 RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMST-EDYLVKRAKEG 299 +S +EM LF D + NT EI+K+CNV++ YFLP++P + ++ K + + Sbjct: 238 KSSKEMSLLFNDYSSLVDNTNEISKKCNVSLSTKGYFLPEYPVPKEHDFDSFIKKLSSDR 297 Query: 300 LEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVG 359 L ++ L D+++ EY RL EL I +MGF YFLIV +FI+WSK+N VPVG Sbjct: 298 LNTLISGLAKDKQD------EYKSRLNYELDQIKKMGFSSYFLIVYDFIEWSKNNDVPVG 351 Query: 360 PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVA 419 PGRGSGAGSLVAYAL IT LDP++ LLFERFLNPER+SMPDFDVDFCMEKRD VI++V+ Sbjct: 352 PGRGSGAGSLVAYALGITTLDPIKHGLLFERFLNPERLSMPDFDVDFCMEKRDLVIDYVS 411 Query: 420 DMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEP 479 YG +AVSQI TFGTMAA+AVIRDV R LG P+ DRI+K+IP PG+TL +A + +P Sbjct: 412 QKYGSEAVSQIATFGTMAARAVIRDVTRALGKPHPLGDRIAKMIPFTPGITLDQAKKEQP 471 Query: 480 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 539 E ++EV+ ++D+A KLEG+ RN GKHAGGVVIAP I+DF P+Y D +T Sbjct: 472 LFAETIRKEDEVREIVDLAYKLEGIARNVGKHAGGVVIAPGSISDFCPVYVDRSSDSIMT 531 Query: 540 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 599 Q+DK DVE GLVKFDFLGLRTLT+I+ A++ IN+ + LD+ IPLDDK F Sbjct: 532 QYDKDDVEKIGLVKFDFLGLRTLTVIDRAVKSINED--LDEFNKLDLNKIPLDDKNVFKF 589 Query: 600 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 659 L +TTAVFQLES GM+DLIKRL+P FE++ AL+AL+RPGPL SGM D F+DRKHG Sbjct: 590 LSSGKTTAVFQLESSGMRDLIKRLKPTKFEEITALLALYRPGPLNSGMHDEFVDRKHGNS 649 Query: 660 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 719 ++YP H+ L+P+LE TYG+I+YQEQVM+ A+VL+G++LG AD+LRRAMGKKK EE Sbjct: 650 PVTYP-----HKLLEPILEETYGVIVYQEQVMEAARVLAGFSLGQADILRRAMGKKKKEE 704 Query: 720 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 779 M +QR +F G KN I+ A IF+L+ +FA YGFNKSHSAAYAL+SYQT +LK +YP Sbjct: 705 MEEQREIFVNGCAKNDISTSNAEHIFNLINQFAEYGFNKSHSAAYALISYQTAYLKTYYP 764 Query: 780 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 839 FMA+V+++++ NT+K+ L+ EC RM +K+L P+I G F VN + EI YG+GAIK Sbjct: 765 EYFMASVLSSELSNTDKIYSLIQECSRMNIKVLKPNILLGKKRFFVNANKEIEYGLGAIK 824 Query: 840 GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 899 GV I+ + E R R L+D + D K ++ LE L SGAFD L P R + Sbjct: 825 GVASSFIDHVCEKRASIKL-RNLWDFSQKIDIKLGGKKSLEALSYSGAFDSLAPTRNVAI 883 Query: 900 NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 959 + D ++ + + D+F + E+ + E + L+ E+++LG Sbjct: 884 ECVKDMVRDGANRSAKNNLKSGDLFAQVEEDFDPYE-KFKDLPKLKLTEKLEFEKKSLGY 942 Query: 960 YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTL 1019 YL+GHP+ +I+ L T + + L+ R + ++G + Sbjct: 943 YLSGHPVLAIENKIKNLR---TLAIQQVTNDTQKASLVCLINNVRQIKDRKGQPLIFVNF 999 Query: 1020 DDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGG------LKMTAREVMDI 1073 D +G ++ ++ +D ++ ++++ I+ + G V DD+ +M RE I Sbjct: 1000 SDGTGSMDGIISSDVIENCHSVIKEGEIVNLKGLVELDDYRSKELGNTMFRMRIREAKAI 1059 Query: 1074 DEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRS-----GTIPVHLYYQRADARARL 1128 D + + + I + ++ D L L L+ G+ +++ + A + Sbjct: 1060 DNELIRLIKDVIIDV--QKSDATSLEDLSAKLDSINKEFWLDGSCSLNVKVMSEQSEAII 1117 Query: 1129 RFGATWRVSPSDRLLNDLRGLIGSEQVELE 1158 G ++ SPS + L L + G +E++ Sbjct: 1118 DLGDDYKFSPSLKNLTYLEDIFGKNILEIK 1147 >UniRef50_Q9ZJF9 DNA polymerase III subunit alpha n=51 Tax=cellular organisms RepID=DPO3A_HELPJ Length = 1211 Score = 1129 bits (2922), Expect = 0.0, Method: Composition-based stats. Identities = 439/1210 (36%), Positives = 679/1210 (56%), Gaps = 102/1210 (8%) Query: 1 MSEPR-FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59 M E + F HL +H++YS++DG K L K+ LGM ++++TD N+ G + FY + Sbjct: 1 MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60 Query: 60 AGIKPIVGADFNVQCDLL-----GDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGP 114 GIKPI+G + + D + HL + A N GY+NL L S AY G+ P Sbjct: 61 EGIKPIIGMEAYIHNDDNLSSKETKQRFHLCLFAKNQEGYENLMFLSSMAYLEGF-YYFP 119 Query: 115 IIDRDWLIELNEGLILLSGGRMGDVGRSLLRGN----------SALVDECVAFYEEHFPD 164 I++ L E ++G+I S G+V L N Y+E F D Sbjct: 120 RINKKLLREHSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKRIACEYQEIFED 179 Query: 165 RYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFT 224 ++LE++R G D+ ++++ GL ++ATND + +D A E+ + + G T Sbjct: 180 DFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMCVAMGKT 239 Query: 225 LDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLP 279 L+D R ++ + Y++S EEM +LFADIPEAL NT EIA +C + + L + P Sbjct: 240 LNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKKNPPTPP 299 Query: 280 QFP----------TGDMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETEL 329 F Y +A+EGL ERL ++ +Y ERLE E+ Sbjct: 300 SFKFTKAYAQNEGLSFEDDASYFAHKAREGLRERL------ILVPEEKHEQYKERLEKEI 353 Query: 330 QVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFE 389 +VI M FPGY LIV +FI+++K+ G+PVGPGRGS AGSLVA+ALKITD+DPL++DLLFE Sbjct: 354 EVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDLLFE 413 Query: 390 RFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVL 449 RFLNPERVSMPD D DFC +R ++IE++ + YG+ V+Q+ITF M AK VIRDV RVL Sbjct: 414 RFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVARVL 473 Query: 450 GHPYGFVDRISKLIPPDPGMTL----------AKAFEAEPQLPEIYEADEEVKALIDMAR 499 PY D +KLIP G+TL A+E EP++ E+ E++E K + + + Sbjct: 474 DMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNEVAKQVWEYSL 533 Query: 500 KLEGVTRNAGKHAGGVVI-APTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLG 558 LE + RNAG HA +V+ + ++ PL+ E+ VTQ+ +E L+KFDFLG Sbjct: 534 NLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFDFLG 593 Query: 559 LRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKD 618 L+TLT+I+ AL++I + +D ++ +DD K + +Q +T +FQ+ES + Sbjct: 594 LKTLTVIDDALKIIKTQH----NIDVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQG 649 Query: 619 LIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLE 678 L KRL+P FED+IA++AL RPGP++SGMVD+F++RKHG E I+Y + L+P+L+ Sbjct: 650 LNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGVEPIAYA-----FKELEPILK 704 Query: 679 PTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINA 738 PTYG I+YQEQVMQI Q + G++LG AD++RRAMGKK + MA ++ F EGA+ G + Sbjct: 705 PTYGTIVYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDG 764 Query: 739 ELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVV 798 + A ++DL+ KFAGYGFNKSHSAAYA++++QT +LK +Y EFMAA++T++ + E V Sbjct: 765 QKAANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVA 824 Query: 799 GLVDECWRMGLKILPPDINSGLYHFHVND--------DGEIVYGIGAIKGVGEGPIEAII 850 +DE + ++++PP INS + F V + + +IV+G+GA+KGVG PI+ II Sbjct: 825 RYIDEVRALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAVKGVGGEPIKNII 884 Query: 851 EARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAAD 910 E R K G ++ L D +R D KL ++ LE L+ SG+ D LG R ++ +L A Sbjct: 885 EERAK-GDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGR 943 Query: 911 QHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW---PEQVVLDGERETLGLYLTGHPIN 967 KA + Q A E EQ + +L+ E ETLG++++G+P++ Sbjct: 944 AKDKANEMMQGGNSLFGAMEGGIKEQVVLDMVDLGEHDAKTLLECEYETLGIHVSGNPLD 1003 Query: 968 QYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKR-GNRIGICTLDDRSGRL 1026 ++ +EI+ + V+ D+ E G G ++ + + KR G G + DR G+ Sbjct: 1004 EFKEEIKGFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKF 1063 Query: 1027 EVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAI 1086 E+MLF L+ ++ L+ ++ L+ ++ + ++ E++D++ ARE Sbjct: 1064 ELMLFEKQLNALEE-LDINKPLVFKCKIE--EQEEVARLRLFEILDLESAREVKIPKARY 1120 Query: 1087 S---------------------------LTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYY 1119 + + + + L ++++S H+ G P++L Sbjct: 1121 KDPEKQKEDVREIPPMEMLASSSCSLAIVLENDVKKEFLRQIKESALKHQ-GKRPLYLII 1179 Query: 1120 QRADARARLR 1129 + D + +++ Sbjct: 1180 KDKDKQFKIQ 1189 >UniRef50_A4EAI0 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EAI0_9ACTN Length = 1267 Score = 1129 bits (2921), Expect = 0.0, Method: Composition-based stats. Identities = 391/1277 (30%), Positives = 611/1277 (47%), Gaps = 147/1277 (11%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAAL--------------GMPALAIT----DFTN- 46 FVHL H+ +SM+DG + +V +A L G+P LA+ + Sbjct: 3 FVHLHNHTVFSMLDGATRIQDMVNRAVELSMPAVAITDHGYMYGVPDLALACDAVNHNTP 62 Query: 47 ----LCGLVKFYGAGHGAG-------------------------------------IKPI 65 F IKPI Sbjct: 63 EYKTWSHDKAFLEKDRRDELVEPDPEESPREHAQYVKDMAMWDEKGNIDELKPPLVIKPI 122 Query: 66 VGADFNVQCD-----LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 G + D EL H+ +LA + GY NL +S+A +G+ P + D Sbjct: 123 FGCEVYFTPDETLARDHKPELYHMILLAKDQEGYVNLMQTVSEAAVQGF-YYKPRVTLDN 181 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRTGRPDE- 178 L +G+I S G + + + RG+ + + + F P +++E+ G + Sbjct: 182 LRRHAKGMICTSACIAGIIPKYIDRGDMEGAIKWAETFRDTFDPGDFYIEIQEHGITTDN 241 Query: 179 ----ESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNY 234 E +++A+ G+ V+ATND ++ D ++ + I +DDP R R Sbjct: 242 GLTDEQMDRTLIDIAKQVGVKVIATNDFHYLRREDAPVQDVIMCIGMNAKVDDPNRMRMT 301 Query: 235 SPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT--GDMSTEDYL 292 + YM++EEEM +F PEA NT+EIA +C V + LP+FP + E Sbjct: 302 GSEFYMKTEEEMRAMFPYCPEACDNTLEIADKCYVELDWDSIILPRFPLLDPGETHESQF 361 Query: 293 VKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSK 352 + ++GL + D R ER E E +VI GF YFLIV E++QW+K Sbjct: 362 RRECEKGLRQHYGD---DWATREIGGVNIKERFEYEYKVICDKGFAAYFLIVAEYVQWAK 418 Query: 353 DNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRD 412 DNG+ VGPGRGS AG++VAYA+ IT DPLE L+FERFL+P+R MPD D+DF E+R Sbjct: 419 DNGIGVGPGRGSAAGAIVAYAMNITAFDPLENGLMFERFLSPQRTEMPDIDMDFDDERRL 478 Query: 413 QVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA 472 +V+EHV +YG + V+ +IT+ T+ AK I D RVL +P R+SK++ DP + L Sbjct: 479 EVVEHVRQLYGPEKVTHVITYSTIKAKQAINDAARVLDYPVYMGQRLSKMVSSDPKVKLK 538 Query: 473 KAFEA--------EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524 + + P E Y+ D++ + +ID A +EG+TR G HA V+I + + Sbjct: 539 QVLDKQPGKEDLFNPDFAEAYKKDDDARRIIDTALSIEGLTRGEGVHACAVLICRDPVNE 598 Query: 525 FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584 P D +G +TQ++ V GL+K DFLGLRTLT+I+ A I K + + Sbjct: 599 HVPTKLDTKGGVEITQYEGHTVADMGLLKMDFLGLRTLTVISKAKANIKKNFGID----I 654 Query: 585 DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644 IP DD + F ++ T VFQ+ES GM IK ++P ++ ++AL+AL+RPGPL Sbjct: 655 KEEEIPFDDPEIFKLMGSGHTAGVFQVESAGMTATIKNMKPTEYKHVVALIALYRPGPLG 714 Query: 645 SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704 +GMV ++I+R +G+E D + L +L TYG ++YQEQVM I+ + G++ G Sbjct: 715 AGMVSSYINRMNGKEPAVSYD-----DRLDDILGETYGTMVYQEQVMLISVEMCGFSKGE 769 Query: 705 AD-MLRRAMGKKKPEEM------------AKQRSVFAEGAEKNGINAELAMKIFDLVEKF 751 +D +R+ + KKK + + + GA KN E+A KI+D V +F Sbjct: 770 SDSRIRKPVAKKKIKLLTSTVLHWEDGSDETTYDHWMNGAIKNNYTREVAQKIWDDVLEF 829 Query: 752 AGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKI 811 A Y FNKSHSA YA++ QT WLKAHYP E+MAAV+T+ T+K+V V C G+ + Sbjct: 830 ASYAFNKSHSAGYAILVMQTAWLKAHYPHEYMAAVLTSYTGKTDKIVHYVSACRHDGIPV 889 Query: 812 LPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDT 871 L PD+N F +G + +G+ I+GVG G +AII R GG F+ L D R D+ Sbjct: 890 LSPDVNESGTEFTATKEG-VRFGLAGIRGVGTGVAQAIIAEREAGGPFKTLHDFVERVDS 948 Query: 872 KKLNRRVLEKLIMSGAFDRLGPHRAALMNSLG-----DALKAADQHAKAEAIGQADMFGV 926 + NRRV+E LI +GAFD G R +M+ + + + AA + K A GQ F + Sbjct: 949 SQANRRVIESLIKAGAFDSTGYPRRQMMHFVDKNNPENIIDAAVKRQKDRASGQTSFFDM 1008 Query: 927 LAEEPE---QIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYV------ 977 + ++ Q W + L E+E LG+Y++ HP+ + + + Sbjct: 1009 FGDVEGSGFEVSVPDPDGQEWDRHLKLSQEKEVLGIYVSDHPLRPFEYALAKARDFSFSQ 1068 Query: 978 --------GGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVM 1029 GK + AG+V + VTK G+ +GI L+D G V+ Sbjct: 1069 IDTGYEVQNPTGGTINQEIPEGKALWWAGMVSSVSKRVTKNGDPMGIVQLEDMEGEATVV 1128 Query: 1030 LFTDALDKYQQLLEK-----------DRILIVSGQVSFDDFSGGLKMTAREVMDID-EAR 1077 +F + + L D + + G++ D ++ A+E++ ++ Sbjct: 1129 VFPKTYKEAEGYLYGEVDPETGAQLSDAFVRIKGKLERSDRGD--QIIAQEIVPLELNEE 1186 Query: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVS 1137 + + + + + + RL L + G V ++ ++ D R LR +V+ Sbjct: 1187 NNKPKVFEVMVPNSRFSQGNMARLATVLTTNPGGD-RVEIFIEQVDGRV-LRAEVPAKVN 1244 Query: 1138 P-SDRLLNDLRGLIGSE 1153 S LL + + ++G++ Sbjct: 1245 ARSIPLLAEAKAIVGNQ 1261 >UniRef50_A8ZS53 DNA polymerase III, alpha subunit n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZS53_DESOH Length = 1217 Score = 1128 bits (2919), Expect = 0.0, Method: Composition-based stats. Identities = 372/1095 (33%), Positives = 577/1095 (52%), Gaps = 52/1095 (4%) Query: 1 MSEPR--FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGH 58 M+ FVHL VH+ YS++DG+ + LV +A MPA+AITD + G+++FY Sbjct: 1 MTTVPDQFVHLHVHTCYSLLDGIIRPDDLVARAVEYKMPAVAITDHGTMFGVIQFYMEAV 60 Query: 59 GAGIKPIVGADFNVQCDLLGDELT-------HLTVLAANNTGYQNLTLLISKAYQRGYGA 111 AGIKPI+G + V + D+ HL +LA GY+NL L + A Q G+ Sbjct: 61 RAGIKPIIGCECYVAPRTIADKTPADHAGLSHLVLLAETMEGYRNLCRLATIAQQDGFF- 119 Query: 112 AGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPD-RYFLEL 170 P ID+ L + +GLI LS G++ + RG D Y + D +FLE+ Sbjct: 120 HKPRIDKALLQKHAKGLIGLSACLKGEIPHLICRGRQDEADAAARQYCDMLGDRNFFLEV 179 Query: 171 IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230 G P++E+ +A ++++ +P+V TND ++D D AHEI + + G T+ D R Sbjct: 180 QNNGLPEQETVNNALLDMSRRLSIPLVGTNDCHYLDPEDSRAHEIALCLQTGQTIHDTDR 239 Query: 231 PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMST-E 289 + + Q +S EMC P A ANTV IA+RC V P T T Sbjct: 240 LKFDTNQLNFKSTGEMCVFLEPFPRAAANTVAIAERCQVAFDFSARHFPVLETPPGKTMA 299 Query: 290 DYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQ 349 D L A GL++R + + Y +RL EL VIN+MG PGYFLI+ +FI Sbjct: 300 DMLEDSAMAGLKKRWQHICKQSSH--ADKSVYQQRLAYELAVINEMGAPGYFLIIADFIA 357 Query: 350 WSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCME 409 ++K+NG+ GPGRGS GSLV Y L IT +DP+E LLFERFLNPER MPD DVD C+ Sbjct: 358 YAKNNGILTGPGRGSAPGSLVCYCLGITGVDPIEHGLLFERFLNPERNVMPDIDVDICIN 417 Query: 410 KRDQVIEHVADMY----GRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465 R+++ +++ D Y G D + I T GTM ++A +R+VGR L P V++++KLIPP Sbjct: 418 GREKIHQYLMDKYNRDDGEDYAACIATLGTMRSRAALREVGRALIMPLDDVNKVAKLIPP 477 Query: 466 DPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDF 525 +L A + EP L + ++ E L+D+ RKLEG+ + +A G+V++ +T + Sbjct: 478 G-ARSLDDALKKEPALRALIDSKPEFGELMDVIRKLEGLPFHILMNAAGIVLSDKPLTCY 536 Query: 526 APLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLD 585 PLY + +TQ D +E GL + D LG+R LT+I+ L++I + + D Sbjct: 537 TPLYRFK--GEMITQLDARSLETMGLARLDLLGMRDLTVISDTLQLIKNQGRQTP----D 590 Query: 586 IAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQS 645 ++ I D + +L + +T VFQL S GMK+L+ + +P ++ L+AL+RPG L++ Sbjct: 591 LSRIDTTDAATCQLLSKGDTFGVFQLASTGMKELLVKARPRSLSEVAVLIALYRPGLLEN 650 Query: 646 GMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGA 705 GMV +++ RK G ++ +YP + L+P+L+ T G+ +YQEQ+MQ QVL+GYT G + Sbjct: 651 GMVADYLGRKQGLKDTTYPTAK-----LEPILKETCGLPVYQEQIMQAVQVLAGYTPGQS 705 Query: 706 DMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYA 765 D R+AMGK+ E++A R F GA GI+ A+++F+ +E F YGFNK+HS AYA Sbjct: 706 DDFRKAMGKRIAEKIADHRQRFINGAAAKGIDKATALQLFEQLEYFGAYGFNKAHSIAYA 765 Query: 766 LVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHV 825 +++Q LKAH+PAEFMA + +++ L+ EC + +LPPD+N F V Sbjct: 766 FIAWQMACLKAHFPAEFMAVWLDISFGCVDRIARLIGECRDSNIPVLPPDVNQSARQFTV 825 Query: 826 NDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKL----NRRVLEK 881 +G+I G+ +K +G I+AII R G F L D C R + +R+ LE Sbjct: 826 V-NGQIRCGLACVKKTDKGLIDAIIAERTAAGPFVSLSDFCNRMSAGRPELLQDRKALEN 884 Query: 882 LIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASC 941 L+ +GAFD G R+ +M L + LK + + + Sbjct: 885 LVKAGAFDSTGATRSQMMAVLDEILKPSLDLQQPRKPAV---------------PALPEV 929 Query: 942 QPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVV 1001 W + E+ +G+ LT P +++R L ++ +G + G+ Sbjct: 930 GEWSPHLRRALEKRAMGICLTPAPPAYCHAKLKR-PTTTPLCSIYENPQGGRVAVDGIWK 988 Query: 1002 AARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSG 1061 A K G + + L+D + +EV++ + + + L R +IV G+ D+ Sbjct: 989 AVEYKQGKDGCPMALAELEDNNAAIEVVIPAEIYESARHALLPGRPVIVEGRYECDEVRI 1048 Query: 1062 GLKMTAREVMDIDEA 1076 + A ++ + + Sbjct: 1049 SP-LQAERIIPLTDI 1062 >UniRef50_A9B8D8 DNA polymerase III, alpha subunit n=6 Tax=Chloroflexi (class) RepID=A9B8D8_HERA2 Length = 1296 Score = 1126 bits (2913), Expect = 0.0, Method: Composition-based stats. Identities = 391/1105 (35%), Positives = 606/1105 (54%), Gaps = 58/1105 (5%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 FVHL VHS+YS++DG A T + ++AA L M ++AITD + G ++FY A +KP Sbjct: 3 DFVHLHVHSEYSLLDGYATTKAIAERAAELQMDSIAITDHGVMYGAMEFYANAKKANVKP 62 Query: 65 IVGADFNVQCDLLGD-------ELTHLTVLAANNTGYQNLTLLISKAYQRGYGAA---GP 114 I+G + + + D HL ++A N GY+NL L S+++ G G P Sbjct: 63 IIGMEAYIAPNSNKDPMVKGGKNYYHLLLIAQNEVGYRNLVKLTSRSHLDGMGKGIFARP 122 Query: 115 IIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRT 173 IDR L + +EGLI+ S G+V + + E VA++ + F P+ YF+EL Sbjct: 123 RIDRQLLEQYHEGLIVTSSCIAGEVIQQVQAKQRQKAIETVAWFRDLFGPENYFIELQLH 182 Query: 174 GR-PDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 P+ V +A +P+VATND F+ D D H +A+ TL + Sbjct: 183 NNTPELVEINEELVRIANEMHVPLVATNDTHFVRREDLDTHSRVMAMGFNLTLQELCSKN 242 Query: 233 NYSPQ-QYMRSEEEMCELFADIPEA-LANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STE 289 + ++ S +EM + + A + NT IA CN+ + G LP+F + Sbjct: 243 YQMDETYHIMSGDEMWDRYKIYGTAPMENTRRIADMCNLKLDFGRVELPEFDIPEGHDAA 302 Query: 290 DYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQ 349 YL +EGL +R EY +RL EL VINQ GFP Y LIV ++++ Sbjct: 303 SYLRLICEEGLIKRCNGNP---------TEEYVQRLSYELDVINQTGFPDYMLIVWDYVK 353 Query: 350 WSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCME 409 +++ NG+P P RGS SLV Y L ITD+DP++ LLFERFL+PER+ MPD D DF Sbjct: 354 FARSNGIPCLP-RGSAGASLVLYCLGITDVDPVQNKLLFERFLSPERLEMPDIDTDFADA 412 Query: 410 KRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP-G 468 +R ++++++A YGR+ V+QIIT+GT+ AKA +RD+GRVL P VDR++KLIP P G Sbjct: 413 RRGEILDYIATKYGRENVAQIITYGTLGAKAALRDMGRVLDIPLSEVDRVAKLIPTLPVG 472 Query: 469 MTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPL 528 MT+AK+ + P+L +IY+ D +++ L+D A+K+EG ++ G HA GVV++ + + PL Sbjct: 473 MTIAKSLDKVPELKQIYDTDPKLRELMDWAQKVEGRMKSVGTHACGVVVSRHPLENMVPL 532 Query: 529 YCDEEGKH-PVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIA 587 + +H + F+ + GL+K D LGL L++ AL++I + K + ++ Sbjct: 533 QRTTKDEHGVMAAFEGPTLAKMGLLKMDILGLTNLSVAAEALQLIEQTTGKT----MWLS 588 Query: 588 AIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGM 647 IPLDDKK+F+ L R ET VFQLES GM + +L+P +D+ +VAL+RPGPL+ Sbjct: 589 DIPLDDKKTFEALGRGETVDVFQLESAGMTRYLVQLKPTRVDDLYGMVALYRPGPLEQ-- 646 Query: 648 VDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADM 707 + +I K+ I Y H LKP+LE TYG+I+YQEQ+MQ+ Q ++ YTLG A + Sbjct: 647 IPVYIHNKNNPHAIKY-----IHPILKPILEDTYGVIVYQEQIMQLLQAVAEYTLGEAYI 701 Query: 708 LRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALV 767 + +A+ KK E MA+ F EG + G+ A ++++L+ FAGY FN+ HS Y L+ Sbjct: 702 VIKAISKKNKELMAENSVRFKEGCLRKGLTQAQADELWELILPFAGYSFNRPHSTLYGLL 761 Query: 768 SYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVND 827 SYQT WLK +YP E+M A ++A ++V V E R+G+ + PPD+N F + D Sbjct: 762 SYQTAWLKNNYPTEYMTATLSAASGEIDEVAKSVAEASRLGVAVSPPDVNGSKEGFTIVD 821 Query: 828 -----------DGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNR 876 + I +G+ AI+ VG GPI+AI++ R++ G F + D CAR D LN+ Sbjct: 822 IAGELPEGIKYNRGIRFGLSAIRNVGVGPIQAILKVRDESGPFSSIEDFCARVDRGVLNK 881 Query: 877 RVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQ 936 RV+E L+ GA D L R + L A+ A + KA GQ +F +L + Sbjct: 882 RVMESLVKCGAMDSLPGTRHQKLAILDRAISAGHETQKAREAGQNSLFDMLGGGEQTSTP 941 Query: 937 SYASCQPWP-------EQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTE 989 + + P ++ +L+ E+E LG+Y++ HP+ Q L G + L + Sbjct: 942 TISPIPFPPAATGLEMQRELLNWEKELLGMYISEHPMAQALANAPHDPGRISLGMIDKKH 1001 Query: 990 RGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILI 1049 G I G++ + + TK+G+ + + ++D G +E + F L++Y +LL D I+ Sbjct: 1002 IGTTIRLIGMINNTKRIQTKKGDSMLVGKVEDLEGEIEFVAFPRTLEQYAELLVDDAIVQ 1061 Query: 1050 VSGQVSFDDFSGGLKMTAREVMDID 1074 ++ +V D+ +++ V Sbjct: 1062 ITAKV--DNRRDEMQLMLESVTAFK 1084 Score = 46.0 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 36/78 (46%), Gaps = 4/78 (5%) Query: 1083 GLAISLTDRQIDDQLLNRLRQS--LEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSD 1140 L I L + + R+++ + G P+ +Y + ++ ++R++P + Sbjct: 1219 HLHIYLPRSGNTETDIRRMQEIDRVLRGYEGDQPITIYL--PNPMGQVMLEPSYRINPQE 1276 Query: 1141 RLLNDLRGLIGSEQVELE 1158 LL++L ++G E LE Sbjct: 1277 GLLSNLYSMLGQESAVLE 1294 >UniRef50_C0QYZ2 DNA polymerase III, alpha subunit n=2 Tax=Brachyspira RepID=C0QYZ2_BRAHW Length = 1236 Score = 1124 bits (2909), Expect = 0.0, Method: Composition-based stats. Identities = 381/1108 (34%), Positives = 615/1108 (55%), Gaps = 49/1108 (4%) Query: 6 FVHLRVHSDYSMIDGLAKTAPL--------------VKKAAALGMPALAITDFTNLCGLV 51 FVHL VH+ YS++DG A+ L + +A LGMP +A+TD N+ G + Sbjct: 3 FVHLHVHTQYSILDGAARIKSLYSKKDKTKRLIPGLIDRAKELGMPGIAMTDHGNMFGAM 62 Query: 52 KFYGAGHGAGIKPIVGADFNVQCDLLGDEL---------THLTVLAANNTGYQNLTLLIS 102 +F+ GI PI+G + V D+ HL +LA + GY NL L++ Sbjct: 63 EFFSEAKDKGIIPIIGCEVYVAPKTRFDKKIENSEEKSAMHLILLAKDKEGYNNLCKLVT 122 Query: 103 KAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF 162 Y G+ P +D + + + N+GLI LS G++ ++ + + + +Y+ F Sbjct: 123 FGYTEGF-YYRPRVDHELIEKYNKGLICLSACMGGEIPIAIRKKDYKQASKLAEYYKSIF 181 Query: 163 PDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDG 222 + +++EL P+E++ A +LA+ + +V TNDV ++ D AHEI +AI Sbjct: 182 GNDFYIELQDHNIPEEKALNSALYQLAKHHNIELVVTNDVHYVSKEDAKAHEILLAIQTK 241 Query: 223 FTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRC-NVTVRLGEYFLPQF 281 TLD P+R + S + ++++EEEM + FA +P+A NTV+IA++C ++ + Y++P + Sbjct: 242 ATLDSPRRYKFPSNEFHLKTEEEMMKSFAKLPKAFENTVKIAEQCQDLNIMTKTYYMPNY 301 Query: 282 PTGDMSTEDY-LVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGY 340 + TE L +GL + P E +RLE EL VI +MGF GY Sbjct: 302 ELPNGETETTALRNMCMDGLNKYYNNNIP---------KEAMDRLEMELGVIGKMGFEGY 352 Query: 341 FLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMP 400 FL+V +FI +++++ V VGPGRGS AGS+VA+A IT ++PL+++LLFERFLNPER SMP Sbjct: 353 FLVVQDFINYARNHDVAVGPGRGSAAGSIVAFATGITKVNPLDYNLLFERFLNPERKSMP 412 Query: 401 DFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIS 460 D DVDF +KR+ +I++V + YG+D VSQI TFG + ++VIRDV RV+G DR++ Sbjct: 413 DIDVDFQDDKREVIIDYVKEKYGKDNVSQIATFGALGGRSVIRDVCRVMGIDLATADRLA 472 Query: 461 KLIPPDPGMTLAKAFEAE-PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAP 519 K IP D + + L + E + E+K + +++ +L+G+ RN G HA GV+I+ Sbjct: 473 KSIPDDVKRVVDIYDHPDCAALVKEIEGNRELKNMYEISTRLDGLVRNVGLHAAGVIISS 532 Query: 520 TKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKN 579 I D AP+Y D + Q++ + VE AGL+K DFLG++ L +I A++ I R Sbjct: 533 HPIMDLAPVYQDSKTGTRACQYEMTYVESAGLIKMDFLGIKNLRLIKDAIKDIKDRYGIE 592 Query: 580 GEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFR 639 +DI IPLDD+ +D+ ++++T VFQ ES GM+ ++ +QP F+D+++ VAL+R Sbjct: 593 ----IDIDKIPLDDEAVYDIFRKADTGGVFQFESPGMRQMLINIQPTGFDDLVSSVALYR 648 Query: 640 PGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSG 699 PGPL SGM ++ DRK+ R+EI Y +H L+P+L+ + G+++YQEQ+M I++V+ G Sbjct: 649 PGPLNSGMDKDYADRKNKRKEIVY-----KHPDLEPILKESQGVLIYQEQIMAISRVIGG 703 Query: 700 YTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKS 759 +T AD LR+AMGKK E+M F +G + G + EL +FD ++ FA YGFNKS Sbjct: 704 FTAAEADDLRKAMGKKIVEKMNSMEEKFIKGGLERGYDKELLTYLFDTMKGFAEYGFNKS 763 Query: 760 HSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSG 819 HS YAL++YQ ++KAHYP E+ A++ + +T+K+ ++E + ++I+ + Sbjct: 764 HSVCYALIAYQEAYIKAHYPMEYYVALLNTVIADTDKISLYLNEIKQKNIEIVTASVFES 823 Query: 820 LYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVL 879 F DG+IVY + A+KGVG AI E R K G F+ L D R D +NR+V Sbjct: 824 DALFS-QKDGKIVYALHAVKGVGIHAALAIQEEREKNGQFKNLEDFVKRVDVHLVNRKVY 882 Query: 880 EKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFG-VLAEEPEQIEQSY 938 E LI GAF G +AL++SL L A + K GQ +F + ++ Sbjct: 883 ETLIKCGAFSEFGHTESALLSSLDAILAHASNYQKETLSGQTMLFDSMSEDDSGSASLVI 942 Query: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998 + ++++ E+E LG L HP +Y+ +I+ L D+ + Sbjct: 943 EKQVEYASNILMENEKEVLGFSLRYHPFARYITKIDYKYFHNTL-DIDNLKDKDEFLLPC 1001 Query: 999 LVVAARVMVTKRGNRIGICTLDD-RSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFD 1057 +V++A TK+ + + D + + + ++KY+ +LE+ +++ G+ + Sbjct: 1002 VVMSASETTTKKNTPMITLKVIDIFTEYVFYITANSQIEKYKDMLEEQTGILIKGRRDKN 1061 Query: 1058 DFSGGLKMTAREVMDIDEAREKYARGLA 1085 FS + ++ +D + L Sbjct: 1062 RFSDKIYNNIVDIKLLDSFLKDKNLKLK 1089 >UniRef50_Q2GJ87 DNA polymerase III, alpha subunit n=8 Tax=Rickettsiales RepID=Q2GJ87_ANAPZ Length = 1127 Score = 1123 bits (2904), Expect = 0.0, Method: Composition-based stats. Identities = 441/1157 (38%), Positives = 658/1157 (56%), Gaps = 43/1157 (3%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHLR HSDYS+++G+ K LV MPA+A+TD NL G ++F AG++PI Sbjct: 5 FVHLRTHSDYSLLEGMIKVESLVAMCVEQKMPAVALTDSGNLFGSLEFSDCAARAGLQPI 64 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 +G + V+ + L ++ +LA + G+ NLT LIS + ++ D L++LN Sbjct: 65 IGCNIMVEESG--NNLGNILLLAKSAEGFANLTNLISNGFNNSQLEKINRVNIDDLLKLN 122 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 185 GLI L+GG + R+LL L + + F D ++EL R G + Sbjct: 123 GGLIALTGGHDDILARALLNNGDDL--RALDSILQVFKDNVYVELQRHGLNGQREVEELL 180 Query: 186 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 245 + A R +P+VATNDV F DF AH+I I G + R R +P+ Y ++ E Sbjct: 181 IRFAYERNIPLVATNDVFFACRGDFQAHDILSCISTGAYVVQEDRHRL-TPEHYFKTASE 239 Query: 246 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTE-DYLVKRAKEGLEERL 304 M ELF+D+PEA+ NT IA+RC+ + + LP FP + TE + L + A GLE RL Sbjct: 240 MYELFSDVPEAVLNTSLIAQRCSFIQEVRKPQLPHFPCFEGRTEAEELTECALAGLEIRL 299 Query: 305 AFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGS 364 ++E +R Y +RL+ EL V+ M + GYFLIV +FI+WSK N + VGPGRGS Sbjct: 300 KSKGIGDDEE--QRDLYLKRLKYELGVVISMEYSGYFLIVADFIRWSKQNDIMVGPGRGS 357 Query: 365 GAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGR 424 GAGSL+A++L ITDLDP+EF L+FERFLNP+RVSMPDFD+DFC EKRD+VIE+V + YG Sbjct: 358 GAGSLIAWSLGITDLDPIEFGLIFERFLNPDRVSMPDFDIDFCQEKRDKVIEYVKEKYG- 416 Query: 425 DAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP--GMTLAKAFEAEPQLP 482 V+ IITFG + A+AV+RDVGRV+ PY +DRI K+IP DP +TL +A E + L Sbjct: 417 -YVAHIITFGKLQARAVLRDVGRVMQIPYAQIDRICKMIPHDPISPVTLLEAIEMDQNLK 475 Query: 483 EIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFD 542 E DE V LI+++ KLEG+ R+A HA G+VI + +F PLY D+ P+TQ++ Sbjct: 476 AEQENDETVAKLIEISLKLEGLYRHASVHAAGIVICDQPLENFVPLYYDKSSSLPITQYN 535 Query: 543 KSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQR 602 VE AGLVKFDFLGLRTLT+I+ +I R ++++ IPL+DKK+++ML Sbjct: 536 MKYVEKAGLVKFDFLGLRTLTMIDQICSLIRARG-----EEIELSKIPLNDKKTYEMLSA 590 Query: 603 SETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEIS 662 ++ VFQLES GM++ I +L+PD +D+IAL++L+RPGP+ + +I RKHG EE Sbjct: 591 GDSIGVFQLESAGMREAISKLRPDSIQDIIALISLYRPGPM--NNIAIYISRKHGLEEPD 648 Query: 663 YPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAK 722 Y H L+ VL+ T+G+I+YQEQVM+IA++L+GY+LG AD+LRRAMGKK EEM + Sbjct: 649 Y-----IHPMLECVLKETFGVIIYQEQVMEIARILAGYSLGEADLLRRAMGKKIKEEMDR 703 Query: 723 QRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEF 782 QR F +GA NGI A IFDLV KFAGYGFNKSH+AAYAL+S+QT +L+A+Y EF Sbjct: 704 QRQDFVDGAVSNGIEESKASYIFDLVAKFAGYGFNKSHAAAYALISFQTAYLRANYTKEF 763 Query: 783 MAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVG 842 A M D+D+ +K+ L + G+ ++PPDIN F V+ + I YG+GA+K VG Sbjct: 764 FTASMNLDIDDKDKLGLLCQQAKMCGIDVMPPDINLSSAEFTVSGN-SIRYGLGALKNVG 822 Query: 843 EGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSL 902 + I+ +GG + +++D + +R LE LI SG+ D + P+R L SL Sbjct: 823 QLTAHEILPV--EGGRYSDIWDFAGNVRIRSPLKRTLESLIKSGSLDGIHPNRRQLFASL 880 Query: 903 GDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLT 962 G L + + Q +F E+ E W E ++ E T+G YL Sbjct: 881 GIILNIIENKKVSMDAHQFSLFS------EKEEGQLEEVDDWTEDEKIEHEFATIGFYLR 934 Query: 963 GHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDR 1022 HP+++Y + + ++ G + + V AG+V + ++ + R I + D Sbjct: 935 YHPLSKYEQVLGKF-GVRFVSSTQEEKESGVTKRAGVVSSVKMR-SANKERFAIVRVSDP 992 Query: 1023 SGRLEVMLFT-DALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYA 1081 G +V + +++ + L +++ D + ++ R + + E+ Sbjct: 993 HGVNDVAFYNSKTIEENRDLFNSGVPVMI----DMDYNASKGRLVGRNICNFHESISLMM 1048 Query: 1082 RGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDR 1141 R + + + + L++ L+ G V++ ++ + V+P Sbjct: 1049 RRVRSIAIHTGQNTLIAHMLQEVLKRDAMG-AEVYIELLSKGHLVLIKLPGAFLVTP--E 1105 Query: 1142 LLNDLRGLIGSEQVELE 1158 +L + + + + + Sbjct: 1106 ILAQIFNISWVDDITIN 1122 >UniRef50_C2MCQ0 DNA polymerase III, alpha subunit family n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2MCQ0_9PORP Length = 1272 Score = 1122 bits (2903), Expect = 0.0, Method: Composition-based stats. Identities = 401/1191 (33%), Positives = 597/1191 (50%), Gaps = 123/1191 (10%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAG-------- 57 +V L VHS YS++DG+A +V KA A GMP +A+TD + G+ F Sbjct: 18 YVPLHVHSHYSILDGMAPVEKIVDKAVACGMPGIALTDHGAMYGIKNFTNYANDKINGDK 77 Query: 58 ----HGAG------------------------------IKPIVGADFNVQ---------- 73 G K I+G + V Sbjct: 78 LSQIKSLGKQIKELEADAANAEEVARLQEEVKTIERSLFKAIIGCEVYVARRSLELKDKD 137 Query: 74 -------CDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNE 126 + HL +LA N GY+NL ++S A++ G P ID+ L E +E Sbjct: 138 AKDPDNPTRSIDRSGYHLILLAKNLKGYRNLIKMVSIAWEHG-EYYKPRIDKKLLTEHHE 196 Query: 127 GLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPD--------- 177 G+I S G++ + +L G E +Y+E F + Y+LE++ D Sbjct: 197 GIIASSACLGGEIAQHILHGRLEEARETARWYQETFGEDYYLEIMLHPNSDPLGGQETYQ 256 Query: 178 -EESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSP 236 ++ +++ + G+ V+ATND F++ D +AH+ + + + DP R R Y+ Sbjct: 257 KQQLVAQEVLKIGQELGIKVIATNDTHFLNEEDAEAHDHLICMTTNSPISDPNRMR-YTK 315 Query: 237 QQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM--STEDYLVK 294 Q++++S EEM LFAD P+ L NT+E+ + +P F + S +DYL Sbjct: 316 QEWLKSPEEMTALFADYPDVLENTLEVCDKVEYYSIDHAPLMPHFELPEGFASEDDYLRH 375 Query: 295 RAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDN 354 EG ++R P PE ER++ EL VI MGFPGYFL+V +FI ++ Sbjct: 376 LTYEGAKKRYGDPVP---------PEVQERIDMELGVIQNMGFPGYFLVVQDFIAAARKL 426 Query: 355 GVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQV 414 GV VGPGRGS AGS VAY L IT ++P+++ LLFERFLNP+R+SMPD D+DF + R +V Sbjct: 427 GVRVGPGRGSAAGSAVAYCLSITQIEPIKYGLLFERFLNPDRISMPDIDIDFDDKNRWRV 486 Query: 415 IEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP-----GM 469 ++ V + YGRD VS IIT TMA K I+ V RV P +R+ KLIP P + Sbjct: 487 LDWVTNKYGRDHVSNIITLTTMATKGAIKGVARVEELPLDQANRLCKLIPDRPPEGVKHL 546 Query: 470 TLAKAFEAEPQLPEI-YEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPL 528 L + + E +E++ I AR+LEG G HA GV+I+ ++D PL Sbjct: 547 NLEWMVQNNQEFREASVSQNEQLANTIRYARQLEGTASTTGVHACGVIISGPPVSDVVPL 606 Query: 529 Y----CDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584 D + V Q++ +E GL+K DFLGL+TL+IIN ALE I + L Sbjct: 607 STAIDPDTNERKLVAQYEGKVIEPTGLIKMDFLGLQTLSIINDALENIKVSYGID----L 662 Query: 585 DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644 DI IP+DD K+F++ + +T FQ ES GM+ +++L+P F+D++A+ AL+RPGP+ Sbjct: 663 DIDTIPVDDPKTFELYSQGDTVGTFQFESPGMRKYLQQLEPTEFKDLVAMNALYRPGPMD 722 Query: 645 SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704 + FI+RKHGR+EI+Y ++P L+ TYGI +YQEQVM +++VL +T G Sbjct: 723 --NIPTFIERKHGRQEITYDL-----PEMEPYLKDTYGITVYQEQVMILSRVLGDFTRGD 775 Query: 705 ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764 +D LR+AMGKKK +EMAK R F E G E +I+D +KFA Y FNKSHS Y Sbjct: 776 SDSLRKAMGKKKEKEMAKYRIKFVENGVTKGHPRETLERIYDGWQKFASYAFNKSHSVCY 835 Query: 765 ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824 A V+YQT +LKAHYPA+FMAA++T + + ++K+ ++E MGL++ PD+N F Sbjct: 836 AWVAYQTAYLKAHYPAQFMAALLTCNQNKSDKLTKYLEEVQHMGLEVKGPDVNESFTAFS 895 Query: 825 VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884 N DG I +G+G I VG EAII+ R + G +++++D RTD +RR LE LI+ Sbjct: 896 ANKDGVIRFGLGGISHVGLSVAEAIIKERKEQGAYQDVYDFFQRTDLTNCSRRALEALIL 955 Query: 885 SGAFDRLGPHRAALMNSLGD-----------------ALKAADQHAKAEAIGQADMFGVL 927 SGAFD G R + ++ QA +FG Sbjct: 956 SGAFDSFGIDREVYFAPIAKSGVSGLSYGKDETFLTALMQYGKILESERTQVQASLFGDS 1015 Query: 928 AEEPEQIEQSYA-SCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMH 986 + + +PW L E+ +G+YL+ HP++ Y IE Sbjct: 1016 DPSVKLPKPIPPKDVEPWSNLERLTKEQSYIGMYLSAHPLDPYAFAIEYLCNCPASDLAQ 1075 Query: 987 PTERG-KVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKD 1045 E G +T AGLV R ++K+ I ++D SG E+ LF + ++ Sbjct: 1076 FAELGLTQLTCAGLVTKVRQGISKKNEPYAIIQIEDASGSGEIPLFGKDYVNFGNFAQEG 1135 Query: 1046 RILIVS-GQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDD 1095 ++V G L T + + + + E R + +++ Q +D Sbjct: 1136 LAILVKMGVAPSRFDPNRLYRTVQSMQLLSDITEDAFRSIQLTIDLSQGED 1186 >UniRef50_C3XGX7 DNA polymerase subunit III n=1 Tax=Helicobacter bilis ATCC 43879 RepID=C3XGX7_9HELI Length = 1268 Score = 1119 bits (2895), Expect = 0.0, Method: Composition-based stats. Identities = 404/1180 (34%), Positives = 646/1180 (54%), Gaps = 100/1180 (8%) Query: 3 EPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGI 62 F HL +H++YS++DG K L K+ LGM ++A+TD N+ G ++FY AGI Sbjct: 6 NIPFTHLHLHTEYSLLDGANKLDVLAKRIKELGMNSVAMTDHGNMFGAIEFYKIMKKAGI 65 Query: 63 KPIVGADFNVQ------CDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPII 116 KPI+G + + H+ + A N GY+NL L S+++ +G+ I Sbjct: 66 KPIIGIEAYIHNKEDLGDKSPNTPKFHICLYAKNEEGYKNLMYLSSQSFIQGF-YRTSRI 124 Query: 117 DRDWLIELNEGLILLSGGRMGDVGRSLL-----------------RGNSALVDECVAFYE 159 ++ L E ++G+I S G++ +L E + Y+ Sbjct: 125 NKKILREYSKGIICSSACLNGEISWNLNLSPYMDSKKRDKKIIMGAKGYDGAKEAIHEYQ 184 Query: 160 EHFPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAI 219 + F D +++E++R G D+ + + L+ G ++ATND + + D E + I Sbjct: 185 DIFGDDFYIEIMRHGIADQRFIDNDLLRLSLETGAKLIATNDAHYTNKEDSSMQEAAMMI 244 Query: 220 HDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLP 279 ++DPKR R+ + Y++S ++M +LF DIPEA+ NT EIA +C++T+ L + P Sbjct: 245 AMATDINDPKRLRHTVQEFYIKSPKQMLDLFMDIPEAVFNTQEIADKCDLTIDLKDDKNP 304 Query: 280 QFPTGD--------------MSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERL 325 P +Y + K+GL +RL + D+ Y +RL Sbjct: 305 PTPPSFKFAKEYAENEGLTIQDEAEYFAYKCKQGLVKRLEQVEKDK------HEIYHKRL 358 Query: 326 ETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFD 385 + E+ +I QM FPGY LIV +FI ++K N +PVGPGRGS AGSLVAY L+ITD+DP++++ Sbjct: 359 QEEIDIITQMKFPGYMLIVWDFINYAKQNKIPVGPGRGSAAGSLVAYCLEITDVDPIKYN 418 Query: 386 LLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDV 445 LLFERFLNPER+SMPD D DFC +R ++ E++ YG V+Q+ITFG M A+ VIRDV Sbjct: 419 LLFERFLNPERISMPDIDTDFCQRRRPEMFEYMKAKYGEYNVAQVITFGKMLARGVIRDV 478 Query: 446 GRVLGHPYGFVDRISKLIPPDPGMTL----------AKAFEAEPQLPEIY-----EADEE 490 R+ G DR +KLIP G+TL A+E EP++ E+ + DE+ Sbjct: 479 ARIYGMSIPNADRFAKLIPSKLGITLKGYNKNGNFIEGAYELEPKIQELITEGDNDRDEK 538 Query: 491 ----VKALIDMARKLEGVTRNAGKHAGGVVI-APTKITDFAPLYCDEEG-KHPVTQFDKS 544 + + +MA +LE + RN GKHA +V+ + ++ PLY E VTQ+ Sbjct: 539 NRGLARKVWEMALRLEKLNRNTGKHAAALVVDSEKELWHKVPLYVSERTKGVMVTQYSMK 598 Query: 545 DVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSE 604 +E L+KFDFLGL+TLT+I AL++I ++++ + ++D+K + L+ Sbjct: 599 YLEPVDLIKFDFLGLKTLTVIQDALDIIKD----TNNIDINLSTLDVNDEKVYRTLRSGN 654 Query: 605 TTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYP 664 T +FQLES GM++ +RLQP +D IAL+ALFRPGP+ SGM D +I+RKHGR +SY Sbjct: 655 TLGIFQLESSGMQEFNRRLQPSGIDDAIALLALFRPGPMDSGMSDEYINRKHGRSPVSYT 714 Query: 665 DVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQR 724 + L+P+L+ TYG+I+YQEQVMQI QV+ G++LG AD++RRAMGKK + MA+ R Sbjct: 715 -----FKELEPILKNTYGVIVYQEQVMQIVQVIGGFSLGEADLVRRAMGKKDAQIMAENR 769 Query: 725 SVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMA 784 + FA+GAEKNG + A ++FD + KFA YGFNKSHSAAY ++++QT +LK +Y EFMA Sbjct: 770 TKFADGAEKNGFDRTKAEELFDQIAKFAEYGFNKSHSAAYGILTFQTAYLKTYYEHEFMA 829 Query: 785 AVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN----DDGEIVYGIGAIKG 840 A+++++ E V +DE MG++ILPP +N+ +F V +IV+G+ AIKG Sbjct: 830 AMLSSESHKIEAVATYIDEARAMGIEILPPHVNTSQTNFSVIIDSNGKKKIVFGLNAIKG 889 Query: 841 VGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMN 900 GEG +++II+ R + G F+ L D + D K+++++VLE L+ SG+ D LG RA++++ Sbjct: 890 AGEGALQSIIDDRKQKGAFKNLEDFITKADFKRISKKVLEPLVKSGSLDNLGYTRASMLD 949 Query: 901 SLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLY 960 +L + ++ + G G+ E E + +L+ E E+LG+Y Sbjct: 950 NLDYICDLGRRMSRERSGG-----GLFGAEELCPELQIKPLPELHNKSLLEYEYESLGIY 1004 Query: 961 LTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLD 1020 L+GHP++ + EIE+ V++ ++ G + G + + ++K G + Sbjct: 1005 LSGHPLDDFRSEIEQIKNVVKIAELENIADGSRVMLIGKLEDLQRKMSKNNRTYGTAKIM 1064 Query: 1021 DRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFD-----------DFSGGLKMTARE 1069 D SG+ + LF D L + + + G++ + + S +++ E Sbjct: 1065 DFSGKQPLTLFEDQL-NLLDSFDLSNPIGIVGKLEKERMVTEGEDGSAEVSYKIEIRVHE 1123 Query: 1070 VMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHR 1109 + + + + + + Q + ++ Sbjct: 1124 IHTLQ-----SCKEIKLRVKKDNAKSQTNTQDSKTFTKQS 1158 >UniRef50_B7GGS6 DNA polymerase III, alpha subunit n=1 Tax=Anoxybacillus flavithermus WK1 RepID=B7GGS6_ANOFW Length = 1077 Score = 1118 bits (2891), Expect = 0.0, Method: Composition-based stats. Identities = 377/1155 (32%), Positives = 604/1155 (52%), Gaps = 86/1155 (7%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F+HL+V S YS++ K LV +A L PA+A+TD L G++ FY A GIKPI Sbjct: 7 FIHLQVRSGYSLLSSTVKIEELVTRARELQFPAIALTDENVLYGVMPFYEACQAHGIKPI 66 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 +G + + L +LA NN GY+ L + + I Sbjct: 67 IGMMATIMDE--HGHPDQLVLLAKNNDGYRQLVHIATAIQTNDGKG----ISLLDFSHHT 120 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRTGRPDEESYLHA 184 LI ++ G G V + LL G + V Y + F +++ + R G ++E L Sbjct: 121 SELIGMTSGVYGRVEQHLLNGEIEQAEAIVQTYAKLFQRGDFYINVQRHGLQEQEHLLSL 180 Query: 185 AVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEE 244 E ++ +P+VATNDVR+I D A E +A+ G + DP RPR + + +++S Sbjct: 181 LFEHSKRWDIPLVATNDVRYIYKEDTLAFECLLAMKHGKKMVDPNRPRLATNEYHLKSAH 240 Query: 245 EMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKRAKEGLEER 303 EM LF++ EA+ TV IA+RC+VT +F+P++P + ++YL E +R Sbjct: 241 EMAALFSNGYEAVEETVRIAQRCHVTFESKRWFMPRYPVPSGKTADEYLQTWCWEQFTKR 300 Query: 304 LAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRG 363 R Y RL+ ELQ+I QM F YFLIV +F++++++ G+ GPGRG Sbjct: 301 FPD----------RPKAYVARLQYELQIIQQMNFSDYFLIVADFVRFARERGILTGPGRG 350 Query: 364 SGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYG 423 S AGS+VAY L IT +DPL++ LLFERFLNP R+S+PD D+DF ++R++VI ++ YG Sbjct: 351 SAAGSIVAYILGITQVDPLQYGLLFERFLNPARLSLPDIDIDFPDDRREEVIRYIEQKYG 410 Query: 424 RDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPE 483 D V+QI+TFGT ++ IR+VGRV + + D Sbjct: 411 TDHVAQIVTFGTFGMRSAIREVGRVFDVDEREIQQTLATGSFD----------------- 453 Query: 484 IYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDK 543 + +A+++EG+ ++ HA G+VI+P +TD PL + VTQ+ Sbjct: 454 ------RTRPWHYVAQRIEGLPKHTSVHAAGIVISPRPLTDIIPLQSGQ-TTTYVTQYAM 506 Query: 544 SDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRS 603 +E GL+KFD L L+ LT+I ++ I +R L +P+DD+K++ +L R Sbjct: 507 DALERLGLLKFDLLALKNLTMIEQMIQSIEQRTGHR----LSFENMPIDDQKTYALLSRG 562 Query: 604 ETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISY 663 +T VFQLES GMK +++ LQP FED++A+ ALFRPGP++ + +I RKHGRE I Y Sbjct: 563 DTFGVFQLESEGMKRILRELQPTTFEDIVAVNALFRPGPMEQ--IPTYIARKHGREPIRY 620 Query: 664 PDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQ 723 H+ L+ +L+ TYG+I+YQEQ+M+IA+ ++ ++L AD+LRRA+ KK +M K+ Sbjct: 621 -----MHDDLQSILQSTYGVIVYQEQIMKIAEQMAKFSLAQADLLRRAISKKDVGQMEKE 675 Query: 724 RSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFM 783 + F EG +NG +A LA ++++L+ +FAGYGFN+SH+ AY+ ++Y ++KAHYP +F Sbjct: 676 KKHFIEGCIQNGYDAHLANELYELIVRFAGYGFNRSHAVAYSYIAYMLAYIKAHYPLDFY 735 Query: 784 AAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGE 843 AAV+T EK++ V E +++LPP I HF V+D+G I +G+ AIK V Sbjct: 736 AAVLTNVSGQKEKMMQCVHELRSKKIRLLPPSIARSEGHFTVDDNG-IRFGLLAIKQVNA 794 Query: 844 GPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLG 903 ++ ++ R K F + FD +R + ++V+E LI SG FD RA L S+ Sbjct: 795 AFVKQMVRERQKR-PFSDFFDFVSRLRMESSQKKVIEALIFSGCFDEFHIERATLYASID 853 Query: 904 DALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTG 963 A++ A+ + ++ Y +P L E++ L +Y++ Sbjct: 854 VAIEHAELMNFSL----------------HVQPKYVHAEPLSLIDQLKYEKQWLNVYVSP 897 Query: 964 HPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRS 1023 HP+ + + G R+ + V TK+G + T+ D S Sbjct: 898 HPVESFSHFYSMW-GAKRMYEWTKENVNHG-KVIVYVEEVTRKRTKKGEEMAFVTICDDS 955 Query: 1024 GRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARG 1083 + ++F + ++ LL++ IL + G++ S G + ++V + Sbjct: 956 DEWQAVVFPTSYRRFHDLLQQGSILYMEGKIE--QRSSGWHLIVQQV--------RKPVC 1005 Query: 1084 LAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLL 1143 + I + ++ +L +L+ L HR G PV LYY+ R +++ + VSP+D + Sbjct: 1006 VYIKIDEQHASPVVLKQLKDVLTAHR-GHAPVILYYETE--RKKVQLSHEYAVSPNDVCI 1062 Query: 1144 NDLRGLIGSEQVELE 1158 L L+G V ++ Sbjct: 1063 RQLVTLLGDGNVAVK 1077 >UniRef50_C3JBN3 DNA polymerase III, alpha subunit family n=2 Tax=Bacteria RepID=C3JBN3_9PORP Length = 1251 Score = 1115 bits (2884), Expect = 0.0, Method: Composition-based stats. Identities = 401/1237 (32%), Positives = 617/1237 (49%), Gaps = 142/1237 (11%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG--- 61 FVHL VHS +S++DG A + LVKKA GMP +A+TD + G+ F+ + Sbjct: 3 PFVHLHVHSQFSILDGQASVSALVKKAIGDGMPGIALTDHGVMFGIKTFFDECNKVNSKH 62 Query: 62 ------------------------------------------IKPIVGADFNVQCDLLGD 79 KPI G + D Sbjct: 63 RSRISALKKEIKELQKKESPTPEDKEEIEKLEQEISEVERQMFKPIFGCEAYCARRTRFD 122 Query: 80 E-----------------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLI 122 + HL +LA N GY NL ++S ++ G P ID+D L Sbjct: 123 KDKDVPDPYNPSRSIDRSGWHLILLAKNKQGYLNLCKMVSASFTEG-EYYRPRIDKDLLE 181 Query: 123 ELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPD----- 177 + +EG+I++S G+V + +L G+ +E V +++ F + Y+LE+ D Sbjct: 182 QYHEGVIVMSACLGGEVPQHILGGHPERAEETVRWFKNIFGEDYYLEVQLHQTDDPNANR 241 Query: 178 -----EESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 + + ++AE G+ VVATNDV F++ D AH++ + + LDDP+R R Sbjct: 242 ETFVQQLAVNEVIYDIAERTGVKVVATNDVHFVNQEDATAHDMLICLGTKRDLDDPQRMR 301 Query: 233 NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM--STED 290 YS Q++++++EEM +FAD PE L+NT+EI + +P FP + + Sbjct: 302 -YSQQEWLKTQEEMNAVFADRPELLSNTLEILNKVEFYTIENPALMPDFPLPEGFDDADK 360 Query: 291 YLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQW 350 YL EG + R P+ E ER++ EL I MGFPGYFLIV + IQ Sbjct: 361 YLQHLTYEGAKMRYGDPIPE---------EVKERIDFELNTIKSMGFPGYFLIVQDLIQA 411 Query: 351 SKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEK 410 ++D GV VGPGRGS AGS VAY LKIT+LDPL++ LLFERFLNP+R+S+PD D+DF Sbjct: 412 ARDMGVCVGPGRGSAAGSAVAYCLKITNLDPLKYGLLFERFLNPDRISLPDIDIDFDDSG 471 Query: 411 RDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP--- 467 R ++++ + YG V+QIITFG M AK+ I DV R+ P RI+KLIP Sbjct: 472 RAKILQWATEKYGHKNVAQIITFGEMKAKSSIADVARLKHIPVEESRRITKLIPDKFSDS 531 Query: 468 ----------------GMTLAKAFEAEPQLPEI-YEADEEVKALIDMARKLEGVTRNAGK 510 +T+ + P+L ++ ++ +++ A+KLEG RN G Sbjct: 532 DMELIHKTPGYENAKGNVTIELSTLVVPELKKLQVGSNTQIQDTFKYAQKLEGSIRNIGV 591 Query: 511 HAGGVVIAPTKITDFAPLYCDEEGK---HPVTQFDKSDVEYAGLVKFDFLGLRTLTIINW 567 HA GV+I I+D P+ + +TQ++ +E GL+K DFLGL+TL+II Sbjct: 592 HACGVIIGKYDISDVIPISTSFDENGEKVLITQYEGKVIESTGLIKMDFLGLKTLSIIRE 651 Query: 568 ALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDC 627 LE + R K+ +DI IPLDD+K+F + +FQ ES GM+ ++ LQPD Sbjct: 652 GLENVKHRFHKD----IDIDHIPLDDEKTFKLFCEGRMVGIFQFESAGMQKYLRELQPDR 707 Query: 628 FEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQ 687 FE +IA+ AL+RPGP++ + +I R+HGREEI Y K +LE T+G+ +YQ Sbjct: 708 FELLIAMNALYRPGPMK--YIPQYIARRHGREEIIYDV-----PETKEILEETFGVTVYQ 760 Query: 688 EQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDL 747 EQVM +++ L+ +T G +D LR+AMGKKK EEM K ++ F +G +NG + E+ KI+ Sbjct: 761 EQVMLLSRSLANFTRGQSDSLRKAMGKKKIEEMEKLKADFLKGGVENGHSKEVLEKIWMD 820 Query: 748 VEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRM 807 E FA Y FNKSH+A Y+ ++YQT +LKAHYP+EFMA ++ ++ N ++ L+ EC M Sbjct: 821 WEDFAKYAFNKSHAACYSWLAYQTAYLKAHYPSEFMAGNLSCNLSNAPEIAKLMKECKAM 880 Query: 808 GLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCA 867 G+++L PD+N + F VN +G+I +G+ IKGV + I+ +IE R + G F ++D A Sbjct: 881 GIRLLSPDVNESMQKFSVNSNGDIRFGLSGIKGVNQTTIDKLIEDREQNGPFTSIYDFVA 940 Query: 868 RTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMN---------SLGDALKAADQHAKAEAI 918 R + +NR+ +E +SGAFD G R + + L + + Sbjct: 941 RIPRQFINRKTMEAFALSGAFDSFGIERESFFAPPVNSREDSFIATLLAYGRIVQEESSS 1000 Query: 919 GQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVG 978 +FG +EE E +PW L E E +G+Y++ +P+ Y +++ Sbjct: 1001 QSMGLFGE-SEELSIPEPEVPQAEPWNNLTKLSKEYELVGIYISSNPLEPYRLILDKLCT 1059 Query: 979 G---VRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDAL 1035 K + + AGLV +TK G TL+D SG E LF Sbjct: 1060 VKLDDLDKKDLEEFKDTRMVFAGLVTNVMEGLTKTNKPYGRFTLEDLSGSHEFALFGKQY 1119 Query: 1036 DKYQQLLEKDRILIVSGQV-----SFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTD 1090 +Y+ L+ + LI V D ++ + + + + + + + Sbjct: 1120 LEYKHFLKTEIFLICHASVKLWQFKKPDEPERFDLSFNSIELLTDEYYSSIKEVELFIPY 1179 Query: 1091 RQIDDQLLNRLRQSLEPHRSGT-----IPVHLYYQRA 1122 ++ID+ + ++ H S + + + Sbjct: 1180 KEIDELFVKEFITEIDAHGSEKANNAQTKLIISFCDE 1216 >UniRef50_C0R3A1 DNA polymerase III, alpha subunit n=9 Tax=Rickettsiales RepID=C0R3A1_WOLWR Length = 1158 Score = 1110 bits (2871), Expect = 0.0, Method: Composition-based stats. Identities = 435/1160 (37%), Positives = 680/1160 (58%), Gaps = 61/1160 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F+HLRVHS YS+++ K L+ MPA+AITD NL G ++F GI+ I Sbjct: 51 FIHLRVHSVYSLLESSVKIEELIGLCLRNKMPAVAITDSGNLFGSLEFAEYAASRGIQLI 110 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQ-RGYGAAGPIIDRDWLIEL 124 +G + V+ ++ + +LA N GY NL L+S++++ R + P +D D L+ L Sbjct: 111 IGCNIIVK---HSEQNLPILLLAKNEQGYTNLVTLVSESFRKRKNNSDIPYVDFDELLNL 167 Query: 125 NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHA 184 + GLI L+GG + + LL + V++ ++ F ++EL R G E Sbjct: 168 STGLIALTGGC---LAQLLLGQDKETVEKLLS----AFNGHLYVELQRHGLSKELELEET 220 Query: 185 AVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEE 244 ++ A R +P+VATNDV F + SD++A++I I +G + + + + Y +S Sbjct: 221 LIDFAYQRNIPLVATNDVFFPNRSDYEAYDILTCISEG-SYALENNRKKLTTEHYFKSVA 279 Query: 245 EMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGLEER 303 EM ELF+DIPEA+ NT+ IAKRC+ R + LP+FP + + + L ++A GLE R Sbjct: 280 EMEELFSDIPEAIHNTLVIAKRCSYMPRSRQPILPKFPCRENKTENEELREQAVAGLEFR 339 Query: 304 LAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRG 363 +A E +Y +RL EL VI M + GYFLIV +FI+WSK NG+PVGPGRG Sbjct: 340 IAN------ETDIDLKQYYDRLNYELSVITSMNYAGYFLIVSDFIRWSKANGIPVGPGRG 393 Query: 364 SGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYG 423 SGAGS+VA+ L+ITDLDP++F L+FERFLNP+R+SMPDFD+DFC EKRD VI++V YG Sbjct: 394 SGAGSIVAWGLQITDLDPIKFGLIFERFLNPDRISMPDFDIDFCQEKRDLVIDYVQKKYG 453 Query: 424 RDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP--GMTLAKAFEAEPQL 481 V+QIITFG + A+AV+RDVGRVL PY VD+ISK++P +P +TL++A E + L Sbjct: 454 --YVAQIITFGKLQARAVLRDVGRVLQMPYSQVDKISKMVPFNPVNPVTLSQAIEFDQNL 511 Query: 482 PEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQF 541 + ++DE + L+D++ KLEG+ R+ HA G+VI K+ +F P+Y D P+TQ+ Sbjct: 512 QKERDSDEVIAKLLDISLKLEGIYRHVSTHAAGIVICDQKLENFVPVYYDPNSALPITQY 571 Query: 542 DKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQ 601 VE AGL+KFDFLGL TLT+I+ +IN+ R +DI+++PLDD+K+++ML Sbjct: 572 SMKYVEKAGLIKFDFLGLGTLTLIDHVCRLINRDR-----QKIDISSVPLDDQKTYEMLS 626 Query: 602 RSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEI 661 ++ VFQLES GM++ + +L+PDC ED+IAL++L+RPGP+ + ++ RKHG E+ Sbjct: 627 SGDSIGVFQLESSGMREALIKLKPDCIEDIIALISLYRPGPMD--NIPTYVARKHGLEKP 684 Query: 662 SYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMA 721 Y H L+ VL+ T+G+I+YQEQVM+IA++LSGY+L AD+LRRAMGKK EEM Sbjct: 685 DY-----IHPLLEEVLKETFGVIIYQEQVMEIARILSGYSLAEADLLRRAMGKKIKEEMD 739 Query: 722 KQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAE 781 KQR +F +GA KNG++ + A IFDLV KFAGYGFNKSH+AAYA++SYQT +LKA+YP E Sbjct: 740 KQRELFIQGATKNGVDYDRASYIFDLVAKFAGYGFNKSHAAAYAVISYQTAYLKANYPLE 799 Query: 782 FMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGV 841 F A+M ++D+ +K+ G+ +L PDIN F + D+ I YGI A++ V Sbjct: 800 FFTALMNLNIDDRDKLNLFYHAAKFSGVTVLSPDINKSQAEFSIEDE-RIRYGIAALRNV 858 Query: 842 GEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNS 901 G E I+ R+ +++++ +N+R LE LI SGAFD + +R L S Sbjct: 859 GFSIAEGIVNVRSSAC--KDIWEFIQN-SGHIINKRALESLIKSGAFDSVHKNRKQLYES 915 Query: 902 LGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYL 961 + + A+++ + QA +FG L + ++ + + + E+ L+ E +LG YL Sbjct: 916 MDTLIYFANKNKQDRESSQAALFGSL----DVLKPKLENVEDFDEEEKLEHELFSLGFYL 971 Query: 962 TGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDD 1021 T HP+ ++ +E+ ++ + AG+++ AR+ ++RG R I TL D Sbjct: 972 TNHPLEKFRTLLEKL-------NIGFIGENRTAKTAGVILNARMRTSERG-RFVILTLSD 1023 Query: 1022 RSGRLEVMLF-TDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKY 1080 E+ + + +++ + L +I+ + ++ +++ + + Sbjct: 1024 PHNVSEIAFYNNEIIEEKRDLFSPGTFVII----DLEASENTTRLAGKDISEFTKRVTST 1079 Query: 1081 ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSD 1140 + L ++ T+ + L L+ G + L + + + ++P Sbjct: 1080 IKELVLT-TECTDSQKAAMELNAILKDE--GRTKIMLKLLLEKHKVSILLPGAYSIAP-- 1134 Query: 1141 RLLNDLRGLIGSEQVELEFD 1160 +++ ++ L + VE+ + Sbjct: 1135 QVIYEISNLSWIKGVEINTN 1154 >UniRef50_Q03SB6 DNA polymerase III catalytic subunit, DnaE type n=18 Tax=Lactobacillus RepID=Q03SB6_LACBA Length = 1121 Score = 1109 bits (2869), Expect = 0.0, Method: Composition-based stats. Identities = 381/1170 (32%), Positives = 602/1170 (51%), Gaps = 69/1170 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FV L+V S YS++ + LV+ A G ALA+ D + G V FY A A IKP+ Sbjct: 2 FVPLQVFSTYSLLQSTNRIDDLVQTAKKRGYTALALADKNVMYGAVAFYNACRQADIKPL 61 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 +G Q + LA N TGYQ L L + G GP+ L +L Sbjct: 62 LGLTLTAQGLNDATQAYDWVFLAQNFTGYQQLMQLSTAYQVGG----GPV----DLTQLT 113 Query: 126 EGLILLS--GGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLH 183 + L L+ ++ + A + + + + + + +L Sbjct: 114 KNLSQLTMIAPLDSEIHTLVANDQLAPAQQILHQLNDWSVGQLAIGVSPDLTAVSRDHLQ 173 Query: 184 AAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSE 243 + L++A P+VA + V +++ D A + AI G T+ DP + ++R Sbjct: 174 S---LSQATTTPLVALSPVAYLNRDDHFAVTVLRAIDAGETISDPTTEQQVQGTHWLRPA 230 Query: 244 EEMCELFADIP--EALANTVEIAKRCNVTVRLGEYFLPQFPTGD-MSTEDYLVKRAKEGL 300 E + FA++ A+ T IA VT++ + LPQFPT + ++ DYL +R GL Sbjct: 231 AEETQRFANVGLTAAVTMTASIAAASTVTLQFQQPQLPQFPTPNQENSRDYLRERCVAGL 290 Query: 301 EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360 + RL + Y +RL+ EL VI++MGF YFLI+ + + ++ + GP Sbjct: 291 KRRL------TANHITDATPYQQRLDHELGVIHRMGFDDYFLIIWDVMNFAHQANIQTGP 344 Query: 361 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420 GRGS AGSLVAY L IT++DPL +DLLFERFLN ER MPD D+D +R+QV+++V D Sbjct: 345 GRGSAAGSLVAYVLAITEVDPLAYDLLFERFLNEERAQMPDIDLDIPDNRREQVLQYVHD 404 Query: 421 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQ 480 YG + V+QIITFGT+AAKA +RDVGRVLG + S IP + +TL +A++ + Sbjct: 405 KYGHERVAQIITFGTLAAKAALRDVGRVLGMAPYELSDWSAAIPAELHITLQRAYDQSQR 464 Query: 481 LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQ 540 L + + L A+KLEG+ R+ HA G+V++ + D PL E + +TQ Sbjct: 465 LRNLVADSSRNQLLFATAQKLEGLPRHYSTHAAGIVLSQKPLRDLVPLQPGSE-ELLMTQ 523 Query: 541 FDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDML 600 + K VE GL+K DFLGLR L+I+ AL ++ K+ K +D+ I L+D + + Sbjct: 524 YPKDTVEAVGLLKMDFLGLRNLSILANALALVKKQTGK----IVDLNQIDLNDPATLKLF 579 Query: 601 QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE 660 ET VFQ ES G+K ++++LQPD FE + A+ AL+RPGP++ +D FI RK+G+E Sbjct: 580 ATGETNGVFQFESSGIKRVLRQLQPDSFELVAAVNALYRPGPME--NIDTFIRRKNGQEP 637 Query: 661 ISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM 720 ++YP ++L P+L PTYG+++YQEQVMQ+A V+ G+TLG AD+LRRAM KKK + M Sbjct: 638 VTYPA-----DALAPILGPTYGVLVYQEQVMQVASVMGGFTLGQADLLRRAMSKKKKQTM 692 Query: 721 AKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA 780 + F GA++ G +A ++F +++FA YGFN+SH+ AY+ +++Q +LKAHYPA Sbjct: 693 DAMQKQFVAGAQQRGYELAVAQRVFAYIDRFANYGFNRSHAVAYSKLAFQLAYLKAHYPA 752 Query: 781 EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG 840 F A++M + ++ K + E R G+ +LPPDIN +F++ I++G+ +IKG Sbjct: 753 AFYASLMNSVINVGAKTKVYLTEAKRHGVTVLPPDINRSTAYFNLY-HSAIIFGLSSIKG 811 Query: 841 VGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMN 900 V + ++ R++ G F++L R +K +L L+ +GAFD G +RA L+ Sbjct: 812 VRRDFLREVLAERHEHGPFKDLHQFLERIASKYRKADLLNALVYAGAFDHFGHNRAELIA 871 Query: 901 SLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLY 960 +L + + + + + G E + S L E LG Y Sbjct: 872 ALPEFISSVE------------LSGDNVELIAALAPKIKSQPDLDLMTKLSQEEAVLGAY 919 Query: 961 LTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLD 1020 L+GHP+ QY + + R + + ++ +T V+ R + TKRG + T Sbjct: 920 LSGHPVEQYQQ-LGRQLQAQAVSELT---ANTRVTVLLYVIKIRQIRTKRGEPMAFVTGS 975 Query: 1021 DRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKY 1080 D + + V +F + + + L D++++V G+V GL++ A +V D+ K Sbjct: 976 DETADVSVTIFPNQFRQISEWLATDQVIVVRGKVEQQR---GLQIVADQVSLADQIPVKP 1032 Query: 1081 A------------RGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARL 1128 I + + D + +L Q L HR G +PV +Y + D + Sbjct: 1033 VADQHTTPTLPAGARWFIRVDQQHTDRAIAQQLAQFLTAHR-GPVPVIVYQPQTDEKRI- 1090 Query: 1129 RFGATWRVSPSDRLLNDLRGLIGSEQVELE 1158 T + +L L L+G+ + Sbjct: 1091 -LPKTQWLQADAQLKVTLEALMGTGNAIFQ 1119 >UniRef50_A5TY39 DNA-directed DNA polymerase III alpha subunit n=10 Tax=Fusobacterium RepID=A5TY39_FUSNP Length = 1133 Score = 1108 bits (2867), Expect = 0.0, Method: Composition-based stats. Identities = 400/1162 (34%), Positives = 651/1162 (56%), Gaps = 39/1162 (3%) Query: 3 EPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGI 62 E FVHL +H++YS+ +G+ + KA LGM +LA+TD+ N+ ++FY GI Sbjct: 2 ENNFVHLNLHTEYSLSEGVNSIDSFLVKAKELGMTSLAVTDYANMFCAIEFYQKAKKMGI 61 Query: 63 KPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLI 122 KPI+G + + + + LT+LA N GY+NL L S+ Y+ ++++ L Sbjct: 62 KPIIGLELPISNRDEQN-IFSLTLLAKNYNGYKNLVKLASELYKNNENREL-KLNKEILK 119 Query: 123 ELNEGLILLSGGRMGDVGRSLLRGNSAL-VDECVAFYEEHF-PDRYFLELIRTGRPDEES 180 E ++ LI LS G++G+++L +S V++ + Y E F + ++LE+ + + Sbjct: 120 EHSQDLIALSSSMNGEIGKAILTNSSDEKVNKIIDEYIEIFSKENFYLEIQANELSETKI 179 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 +LA+ L +VATN+V ++D ++ +I + I G + + R R S + Y+ Sbjct: 180 INDRFYDLAKFHDLELVATNNVYYVDRDGYELQDIIICIQSGLKVKEKNRKRAISKELYL 239 Query: 241 RSEEEMCELF-ADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMST--EDYLVKRAK 297 +S++EM +A+ N IA CNV + G P + + ++YL Sbjct: 240 KSKDEMKRFLGEKFEKAIENANYIADLCNVEIGFGNLQFPYYEVPSEYSGMDEYLKTICH 299 Query: 298 EGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVP 357 +++ + +RLE EL VI +MG+ GYF++V +FI ++K G+P Sbjct: 300 TNIKKLYKEDL---------TKDILDRLEYELSVIIKMGYSGYFIVVWDFISYAKRRGIP 350 Query: 358 VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEH 417 VGPGRGS AGSLVAY L IT +DP+ ++LLFERFLNPER+SMPD D+D C E+RD++I++ Sbjct: 351 VGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERISMPDIDIDICRERRDELIDY 410 Query: 418 VADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEA 477 V YGRD V+ IITFG M A+A IRD+GRVL +D++SKL+ P L K + Sbjct: 411 VVHKYGRDRVAHIITFGRMKARAAIRDIGRVLDIDLKKIDKLSKLVSPFQA--LEKTLKE 468 Query: 478 EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHP 537 ++ ++Y D E++ +ID+A ++E R+ HA G++I + P+Y DE+ Sbjct: 469 NVEVAKLYTTDIELQKVIDLAIRIENTVRHVSTHAAGILITKEDLDKTVPIYLDEKEGVI 528 Query: 538 VTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSF 597 TQ+ ++E GL+K DFLGL+ L+ I ++ I K + +D+ IPLDDKK F Sbjct: 529 ATQYQMKELEELGLLKIDFLGLKNLSNIQRTIDYIKKYK----NVDIDLYKIPLDDKKVF 584 Query: 598 DMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHG 657 ML ++T VFQLES G++ ++KRL+PD FED++AL+AL+RPGPLQSGMVD+FI+RK+G Sbjct: 585 HMLSLGDSTGVFQLESPGIRKIMKRLKPDKFEDIVALLALYRPGPLQSGMVDDFINRKNG 644 Query: 658 REEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKP 717 +E+I YP H++L+ +L+ TYG+ILYQEQVM+IA ++ Y+LG AD+LRRAMGKK Sbjct: 645 KEKIEYP-----HKNLEIILKETYGVILYQEQVMKIASYMADYSLGEADLLRRAMGKKNF 699 Query: 718 EEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAH 777 M + R F E A NG E + +IF+L++KFAGYGFNKSHS AYA++SY T + KA+ Sbjct: 700 AIMRENREKFIERAIHNGYTVEKSEEIFELIDKFAGYGFNKSHSVAYAMISYWTAYFKAY 759 Query: 778 YPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGA 837 YPA + AAVMT+++ T + ++ G+++ P++NS +F V ++G I Y + A Sbjct: 760 YPAFYYAAVMTSEISETGDIAYYFNDAKEHGVRVYSPNVNSPSAYFEVKNEG-ITYSLAA 818 Query: 838 IKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAA 897 IK G + I+E G + L + R +N+R LE LI+SGA D + +R Sbjct: 819 IKNFGLTMAKKIVEDVKLNGKYTTLEEFVFRNKKNGMNKRALEALILSGALDEIKGNRKE 878 Query: 898 LMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETL 957 S+ L + + K + I Q ++FG A + + A + + L+ E+E L Sbjct: 879 KFLSIDKVLDYSSKAPKTDEIQQMNLFG--AAAKTIDKFNLAISEDFTLDEKLNKEQEFL 936 Query: 958 GLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGIC 1017 G YL+ HP+++Y + + +L + E +VI G + + +TK+ ++ + Sbjct: 937 GFYLSSHPLDRYKDILTTF-SIKKLSEF-DLEGNQVIKTFGTITNLKKTITKKEEQMAMF 994 Query: 1018 TLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGG--LKMTAREVMDIDE 1075 L + + F +++ + + + + + G++ D++ G K+ ++M++D+ Sbjct: 995 NLSCYDRTISCIAFPRVYERFITEIIEKKTVYIEGKIQIDNYKGESTSKLLVDKLMELDK 1054 Query: 1076 AREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWR 1135 E A+ L I + D +RL+ + G + + D + Sbjct: 1055 IFEYPAKKLFILIEPE--DSYRYSRLKDLI-NFNKGKTQIVFAIKNKDEKKLQTMNKG-- 1109 Query: 1136 VSPSDRLLNDLRGLIGSEQVEL 1157 V S +L L+G +++++ Sbjct: 1110 VKLSKDFFENLIELMGIDKIKI 1131 >UniRef50_A6DMI0 DNA polymerase III, alpha subunit n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DMI0_9BACT Length = 1223 Score = 1106 bits (2861), Expect = 0.0, Method: Composition-based stats. Identities = 411/1155 (35%), Positives = 631/1155 (54%), Gaps = 42/1155 (3%) Query: 17 MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 72 M+ L+K+ G A A+TDF N+CG + F A IKPI+G + Sbjct: 1 MLQSACTMPALIKRLEEGGFEAAALTDFANMCGSIAFTNGLKKANIKPILGCYTYLNNSR 60 Query: 73 -QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEGLILL 131 Q L +LA NN GYQNL + ++++ + P IDR +L + +EG+I + Sbjct: 61 TQNPSNMSSFNGLILLAKNNVGYQNLCKINAQSHLESFH-IKPRIDRSFLRQYSEGIIAI 119 Query: 132 SGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRTGRPDEESYLHAAVELAE 190 + D+ L + + FY + F + ++LE+ + R ++ ++LA+ Sbjct: 120 APFHDSDIASDLSKNIDPT--NALNFYVDIFGKENFYLEIQKHKREGDDEKYPLVLQLAK 177 Query: 191 ARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELF 250 + +VA+ V + ++ H+I + + T+ DP++ R Y+ EEM LF Sbjct: 178 DNEIGLVASQTVYYPEAKMAIPHDIVCCVGE-KTVHDPQKLRFPEKNYYLHLPEEMEGLF 236 Query: 251 ADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKRAKEGLEERLAFLFP 309 +D+PEAL NT +IA +C+V E P +P D + + +L++ GL+ER Sbjct: 237 SDVPEALENTRKIANQCDVAFDTSE-HYPVYPMSDDRTQQQFLLEICVGGLKERYG--LD 293 Query: 310 DEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSL 369 + + +R E ER + EL VI++ G+ YFL+V +FI WSK N +PVGPGRGSGAGS+ Sbjct: 294 HKNPKDQREKEIVERTDFELGVIHKSGYDSYFLVVWDFINWSKTNDIPVGPGRGSGAGSI 353 Query: 370 VAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQ 429 VAY IT++DP++++LLFERFLNPER+S PDFD+DFC +R +VI++V YG + V+Q Sbjct: 354 VAYLTGITNIDPIKYNLLFERFLNPERISPPDFDIDFCERRRPEVIDYVRKKYGSEKVAQ 413 Query: 430 IITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAF----EAEPQLPEIY 485 I T+GTM AKAVI+DV R LG+ + D+I+KLIP D +TL KA +L + Sbjct: 414 IGTYGTMKAKAVIKDVTRALGYEHTRADQITKLIPEDLKITLHKALFDPKIKSEELIALN 473 Query: 486 EADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSD 545 +++E VK +ID A LEG+ RN G HA GV+I ++T+ PL G+ VTQF Sbjct: 474 DSEEWVKQIIDNAMPLEGLNRNMGIHACGVIIGDQELTNLIPLISGANGE-VVTQFSAGP 532 Query: 546 VEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSET 605 E GL+K DFLGLRTLT+I L +I + + +DI AIP+DD++++ + Q +T Sbjct: 533 CEDLGLLKMDFLGLRTLTLIKDTLGLIKENH----DIEIDIEAIPIDDRRTYKLFQEGKT 588 Query: 606 TAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPD 665 TAVFQ ES GM+ +K LQP F D+IA+ AL+RPGP+ + +FI+RKHGREEI+Y Sbjct: 589 TAVFQYESAGMQKYMKELQPTVFPDLIAMNALYRPGPIA--YIPSFIERKHGREEITYDC 646 Query: 666 VQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRS 725 E + L+ TYGI +YQEQVM ++Q L +T G AD LR+AMGKKK + +A+ + Sbjct: 647 -----EGMDEYLQETYGITVYQEQVMLLSQKLGNFTKGEADTLRKAMGKKKMDLLAQLKP 701 Query: 726 VFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAA 785 F + E NG + + + ++ E FA Y FNKSHS YA V+YQT +LKAHYPAEFMAA Sbjct: 702 KFLDQGEGNGHDRKKLEETWEKWEAFASYAFNKSHSTCYAWVAYQTAYLKAHYPAEFMAA 761 Query: 786 VMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGP 845 VMT+++ N +KV ++EC +GLK+LPP+IN F V +G I + +GAIKGVG Sbjct: 762 VMTSELGNADKVTFFLEECRNLGLKVLPPNINKSKVTFSVE-NGAIRFALGAIKGVGTSA 820 Query: 846 IEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDA 905 E I+ R + G + +LC R ++R+VLE +I SG D G R+AL + A Sbjct: 821 SETIVRIRKE-GEYESFMNLCERVGHTNVSRKVLEGIIASGGMDEFGNKRSALTQFIDRA 879 Query: 906 LKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHP 965 L+ + A A+GQ +F + E S W + LD E+ LG Y TGHP Sbjct: 880 LEHSSSKANDLAMGQMSLFAEVEEVNTISPDD--SMPEWDLRYKLDMEKTLLGFYATGHP 937 Query: 966 INQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGR 1025 + ++ + I+++ +E V ++ + TK+G +D S Sbjct: 938 VGEHKQLIKKFSSNSITGLKKQSEDRAVARLGVMISNLNLRKTKKGKTFASFNAEDLSDG 997 Query: 1026 LEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLA 1085 +E + + D+ + L+ + +++ + S + ++ R + I E+ + Sbjct: 998 IECICW--DYDQNSEALKDNSTILIEAEFSREPR---TQLIVRNAIPIHESVSAHTEQTL 1052 Query: 1086 ISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLND 1145 I L + ++D + ++ ++ + V+ Y QR + LR + + Sbjct: 1053 IILDESKLDQEKESQFKELCSKNIG---IVNDYEQRLLTQTALRMVHKSQKDLIPKFEKY 1109 Query: 1146 LRGLIGSEQVELEFD 1160 LR L+ + Sbjct: 1110 LRDTFLQNSNRLQLE 1124 >UniRef50_Q9Z7N8 DNA polymerase III subunit alpha n=16 Tax=Chlamydiales RepID=DPO3A_CHLPN Length = 1240 Score = 1105 bits (2858), Expect = 0.0, Method: Composition-based stats. Identities = 428/1243 (34%), Positives = 659/1243 (53%), Gaps = 121/1243 (9%) Query: 7 VHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIV 66 + L HS YS++D ++ V K G+PALA+TD NL G V FY GI+PI+ Sbjct: 4 IPLHCHSQYSVLDAMSSIKDFVAKGQEFGIPALALTDHGNLYGAVDFYKECTQKGIQPII 63 Query: 67 GADFNVQCDLLGDEL--------THLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDR 118 G + + D+ HL +L N GY+NL +L S A+ G+ P ID+ Sbjct: 64 GCECYIAPGSRFDKKKEKRSRAAHHLILLCKNEQGYRNLCILTSLAFTEGF-YYFPRIDK 122 Query: 119 DWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPD- 177 D L + +EGLI LSG V + L+ AL+ E + ++++ F D YF E+ + Sbjct: 123 DLLRQYSEGLICLSGCLSSSVSDAALKSPEALLLE-LQWFQDLFKDDYFTEVQLHKMSEE 181 Query: 178 --------------------EESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRV 217 + A +E ++ G+P VATND+ +I+++D+ AHEI + Sbjct: 182 SIAGFKEEWLKQEYYSLIEKQIKVNTAVLEASKRLGIPTVATNDIHYINANDWQAHEILL 241 Query: 218 AIHDGFT---------LDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCN 268 + G T + +PKR S + Y +S +M ELF DIPE ++NT+E+AKRC+ Sbjct: 242 NVQSGETVRIAKQNTHIPNPKRKVYRSREYYFKSPAQMAELFKDIPEVISNTLEVAKRCD 301 Query: 269 VTVRLGEYFLPQF-PTGDMSTEDY------------LVKRAKEGLEERLAFL----FPDE 311 T + P + P + Y L + A+E L ++ + + Sbjct: 302 FTFDFSKKHYPIYVPESLKTLNSYTEEDRYQASAVFLKQLAEEALPKKYSSEVLAHIAKK 361 Query: 312 EERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVA 371 ER++ E+ +I G Y LIV + I W+K NG+PVGPGRGSGAGS++ Sbjct: 362 FPHRDPIDIVKERMDMEMAIIIPKGMCDYLLIVWDIIHWAKANGIPVGPGRGSGAGSVLL 421 Query: 372 YALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQII 431 + L IT+++P+ FDL FERF+NPER+S PD D+D CM R++VI + + +G+D V+QII Sbjct: 422 FLLGITEIEPIRFDLFFERFINPERLSYPDIDIDICMAGRERVINYAIERHGKDNVAQII 481 Query: 432 TFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEV 491 TFGTM AK ++DVGR L V+ I+K IP D TL+KA E +P L ++Y D E Sbjct: 482 TFGTMKAKMAVKDVGRTLDMALSKVNHIAKHIP-DLNTTLSKALETDPDLHQLYINDAES 540 Query: 492 KALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGL 551 +IDMA LEG RN G HA GV+I ++T+ P+ ++ TQ+ VE G+ Sbjct: 541 AQVIDMALCLEGSIRNTGVHAAGVIICGDQLTNHIPICISKDSTMITTQYSMKPVESVGM 600 Query: 552 VKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQL 611 +K D LGL+TLT IN A+ I K+ ++ L +A +PLDD +F +L + +T +FQ+ Sbjct: 601 LKVDLLGLKTLTSINIAMSAIEKKTGQS----LAMATLPLDDATTFSLLHQGKTMGIFQM 656 Query: 612 ESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHE 671 ES+GM++L K L+PD FE++IA+ AL+RPGP+ M+ +FI+RKHG+E I Y H Sbjct: 657 ESKGMQELAKNLRPDLFEEIIAMGALYRPGPMD--MIPSFINRKHGKEIIEY-----DHP 709 Query: 672 SLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGA 731 ++ +L+ TYGI++YQEQVMQIA L+ Y+LG D+LRRAMGKK ++M ++R F + A Sbjct: 710 LMESILKETYGIMVYQEQVMQIAGALASYSLGEGDVLRRAMGKKDFQQMEQEREKFCKRA 769 Query: 732 EKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADM 791 NGI+ ELA IFD +EKFA YGFNKSH+AAY L++Y T +LKA+YP E++AA++T D Sbjct: 770 CNNGIDPELATVIFDKMEKFAAYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDS 829 Query: 792 DNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIE 851 D+ EK+ L+ E MG+ ILPP IN HF D+G I + +GAIKG+G G IE+I+E Sbjct: 830 DDIEKIGKLIREAQSMGIPILPPHINVSSNHFVATDEG-IRFAMGAIKGIGRGLIESIVE 888 Query: 852 ARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQ 911 R+ G + + D R+D KK++++ +E LI +G FD +R L+ S+ +A + Sbjct: 889 ERDHHGPYESIRDFIQRSDLKKVSKKSIESLIDAGCFDCFDSNRDLLLASVEPLYEAIAK 948 Query: 912 HAKAEAIGQADMF--GVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQY 969 K A G F G + + E ++ +L E+E LG+YLT HP++ Sbjct: 949 DKKEAASGVMTFFTLGAMDRKNEVPICLPKDIPTRSKKELLKKEKELLGIYLTEHPMDTV 1008 Query: 970 LKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMV-TKRGNRIGICTLDDRSGRLEV 1028 + R + V + G V+ ++ + +K + + + D E+ Sbjct: 1009 RDHLSR-LSVVLAGEFENLPHGSVVRTVFIIDKVTTKISSKAQKKFAVLRVSDGIDSYEL 1067 Query: 1029 MLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYA------- 1081 ++ D ++ Q+LLE+DR ++ + D S L+++ R + D+ E Sbjct: 1068 PIWPDMYEEQQELLEEDR--LIYAILVLDKRSDSLRISCRWMKDLSIVNENIIYECDQAF 1125 Query: 1082 -------------------------------------RGLAISLTDRQIDDQLLNRLRQS 1104 + +SL ++ L L++ Sbjct: 1126 DRIKNQVQKMSFTMSTSGKETKAKGNKPNENGHTQALAPVTLSLDLNELRHSHLCILKKI 1185 Query: 1105 LEPHRSGTIPVHLYYQRADARARLRFGATWRVSPS-DRLLNDL 1146 ++ H V ++ Q + A + + V + L +L Sbjct: 1186 VQKHPGSRTLVLVFTQDNERVASMSPDDAYFVCEDIEELRQEL 1228 >UniRef50_B9CKX0 DNA polymerase III subunit alpha n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CKX0_9ACTN Length = 1276 Score = 1103 bits (2853), Expect = 0.0, Method: Composition-based stats. Identities = 396/1180 (33%), Positives = 577/1180 (48%), Gaps = 89/1180 (7%) Query: 46 NLCGLVKFYGAGHGAG-IKPIVGADFNVQCDLLGDEL-----THLTVLAANNTGYQNLTL 99 N ++ A IKPI G + D + HL +LA N TGY NL Sbjct: 108 NKTHDIEAVKANKPHPLIKPIFGCEAYFITDDCIERGTKQTRYHLILLAKNETGYVNLMK 167 Query: 100 LISKAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYE 159 ++S+A + P D L +EG+I S G + RS G + Y+ Sbjct: 168 MMSEAASKEMFYFKPRTTLDMLRRYHEGIICTSACVSGIIPRSFFAGQPEEAERWALIYK 227 Query: 160 EHFPDRYFLELIRTGRPD-------EESYLHAAVELAEARGLPVVATNDVRFIDSSDFDA 212 E F D ++LE+ G D + + + L + VVATND ++ D Sbjct: 228 EIFGDDFYLEVQDHGLSDPNWNGFTDRTLSEQILNLGHKLNIKVVATNDNHYLTREDASV 287 Query: 213 HEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVR 272 +I I G D R R + Y ++EEEM E+F+ PE + NT+E+A +CN + Sbjct: 288 QDIASCIGTGSKFADANRKRMSGNEFYFKTEEEMREIFSWAPEVIDNTLEVADKCNYELD 347 Query: 273 LGEYFLPQFPT--GDMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQ 330 +LP+FP ++E+ K +EGL R + + E ER E E Sbjct: 348 WTHMYLPKFPDLAEGETSEERFRKECEEGLARRYGENWREVEISGIN---VKERFEYEYD 404 Query: 331 VINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFER 390 +I + GF YFLIV E+++W+K NG+ VGPGRGS AG++VAYA+ IT DPLE L+FER Sbjct: 405 IICKKGFADYFLIVQEYVRWAKQNGIGVGPGRGSAAGAIVAYAMDITTFDPLENGLMFER 464 Query: 391 FLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLG 450 FL+P+R MPD D+DF E+R +V+EHV +YG + VS +IT+ T+ AK I D RVL Sbjct: 465 FLSPQRSEMPDIDMDFDDERRLEVVEHVRQLYGPERVSHVITYSTIKAKQAINDACRVLD 524 Query: 451 HPYGFVDRISKLIPPDPGMTLAKAFEA---------EPQLPEIYEADEEVKALIDMARKL 501 +P R+SK+I DP L+K P E Y +E + +ID A + Sbjct: 525 YPVYQGQRLSKMISNDPKAQLSKVLHKGDGEKNDLYNPDFEEAYNTEEASREIIDAALAI 584 Query: 502 EGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRT 561 EG+ R G HA V+IAPT + D P D +G+ +TQF+ V GL+K DFLGLRT Sbjct: 585 EGLHRGEGVHACAVLIAPTPVNDHVPTKMDTKGEVEITQFEGHSVADMGLLKMDFLGLRT 644 Query: 562 LTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIK 621 LT+I+ AL+ I + +++ IP +D + + +++ T+ VFQ+ES GM IK Sbjct: 645 LTVISRALKNIKAN----FDVDINVDEIPFEDPEIYRLMREGRTSGVFQIESAGMTATIK 700 Query: 622 RLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTY 681 ++P F+ ++AL+AL+RPGPL +GMV ++IDR +GREE D L +L TY Sbjct: 701 GMRPTEFKHIVALIALYRPGPLGAGMVSSYIDRMNGREEPVDYD-----PRLHDILAETY 755 Query: 682 GIILYQEQVMQIAQVLSGYTLGGAD-----------MLR-RAMGKKKPEEMAKQRSVFAE 729 G ++YQEQVMQI+ +SG+T G +D L + + E Sbjct: 756 GTMVYQEQVMQISMKMSGFTAGESDKVRKAVAKKKIKLMQEVIQHWDDGADETMEQHWKE 815 Query: 730 GAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTA 789 GA +NG E A I++ V KFA Y FNKSHSA YA++ QT WLKAHYP E+MAAV+T+ Sbjct: 816 GAVRNGFKRETAEIIWEDVLKFASYAFNKSHSAGYAILVMQTAWLKAHYPHEYMAAVLTS 875 Query: 790 DMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAI 849 M T+K+V V C + G+K+ PDIN F +G I +G I+GVG G EAI Sbjct: 876 FMGKTDKIVHYVSACRQEGIKVSQPDINESGRDFTATKEG-IRFGFAGIRGVGAGVAEAI 934 Query: 850 IEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLG-----D 904 + R KGG F L D R D + R V+E LI +GAFD G R LM + + Sbjct: 935 MAERQKGGPFSNLRDFIDRMDASQAKRNVVEALIKAGAFDSTGYTRMQLMKLIDKNNPEN 994 Query: 905 ALKAADQHAKAEAIGQADMFGVLAEEPE---QIEQSYASCQPWPEQVVLDGERETLGLYL 961 L +A + + +A GQ MF + +E + W + L E + LG+Y+ Sbjct: 995 LLDSAAKRQRDKASGQISMFDLFSEVEGSGFTEDFPDPDGVEWERRFKLSQEYDVLGIYV 1054 Query: 962 TGHPINQYLKEI---------------ERYVGGVRLKDMHPTERGKVITAAGLVVAARVM 1006 + HP+ Y + E +K+ G+ I +G+V + Sbjct: 1055 SDHPLTPYAYALSLARDYELVDIDATEEYRAPDGGIKERFKVPEGENIRLSGMVTNIQKR 1114 Query: 1007 VTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLL-----------EKDRILIVSGQVS 1055 +TK G+ + I TL+D G L ++LF A KY L + D I+ V G++ Sbjct: 1115 ITKNGDPMAIVTLEDMEGELSLVLFPKAYKKYASTLAGSVDPETGETQGDVIVGVFGKLE 1174 Query: 1056 FDDFSGGLKMTAREVMDID-EAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIP 1114 D G + V I+ K R L I + + L Q +R Sbjct: 1175 RSDR--GTQFICSGVTPIELNEANKRPRVLEIQIPVSKFSRANYEMLSQIFNKYRGNDC- 1231 Query: 1115 VHLYYQRADARARLRFGATWRVSP-SDRLLNDLRGLIGSE 1153 V L + + RV + ++ +L ++G + Sbjct: 1232 VELRIESTQGDV-MHMEIATRVDARNMAMITELSYVLGEK 1270 Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 24/56 (42%), Positives = 32/56 (57%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61 FVHL HSD+S++D + +VK+A L MPALA+TD L G+ F A Sbjct: 3 FVHLHNHSDFSILDAATRVNDMVKRAVDLKMPALALTDHGYLFGIPDFDLACRKYN 58 >UniRef50_UPI0001C42452 DNA polymerase III alpha subunit n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42452 Length = 1117 Score = 1098 bits (2839), Expect = 0.0, Method: Composition-based stats. Identities = 392/1156 (33%), Positives = 626/1156 (54%), Gaps = 48/1156 (4%) Query: 8 HLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVG 67 H V+S+YS++ + LV KA G ALA+TD N+ V FY A GIKP++G Sbjct: 5 HTNVYSEYSLLSSTNRIKELVSKAKETGFTALALTDKGNMFAAVPFYKACLETGIKPVIG 64 Query: 68 ADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEG 127 + ++ + + L +LA N TGY++L + + AG + D +N+ Sbjct: 65 LEIPIKDN---EHSGSLRLLAKNTTGYKSLLKISTLLQTEDNLRAG-LAPDDLRSRINDC 120 Query: 128 LILLSGGRMGDVGRSLLRGNSALVDEC-VAFYEEHFPDRYFLELIRTGRPDEESYLHAAV 186 LI++ + + + G E V + + ++++L + + A Sbjct: 121 LIII--PYDSPMHQLIKAGEVEAAKEWCVRWITRSKKEDWYIDLAGNADRESHHW-EAVS 177 Query: 187 ELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEM 246 + A L + +N VRF +++A+ AI +G T+ + + Y++S+EE+ Sbjct: 178 QFASRYNLKLCGSNPVRFTSKENYEAYAAVRAIREGKTIH-LQDEGHAERSFYLKSKEEL 236 Query: 247 CELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFP-TGDMSTEDYLVKRAKEGLEERLA 305 + F+ +P AL+ EI ++CN+T+ L +LP +P T ++ L K EG +R Sbjct: 237 KQSFSPVPAALSGLGEIVEQCNITIDLDRRYLPAYPFTKSEPAKEVLKKACLEGANKRFN 296 Query: 306 FLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSG 365 E RLE EL VI+QMGF YFLIV +F+Q ++ + GPGRGS Sbjct: 297 HTI---------TDEVRRRLEKELAVIDQMGFNDYFLIVADFMQHARKRNMMTGPGRGSA 347 Query: 366 AGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRD 425 AGSL AY L ITD++PL++DLLFERFLNPER+S+PD D+DF +RD+VI++V + YG D Sbjct: 348 AGSLTAYVLYITDVNPLKYDLLFERFLNPERISLPDIDIDFPDHRRDEVIQYVQEKYGPD 407 Query: 426 AVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIY 485 V+QI TFGT+AA+A IRD G+ L +++++KLIP PG+T+ KA E E L +I Sbjct: 408 HVAQIATFGTLAARAAIRDTGKALSCDSFLIEKVAKLIPSTPGITIKKAMEQERGLQQIR 467 Query: 486 EADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSD 545 E+ L+ +A +EG+ R+ HA GVVI+P +T+ L + G +TQ Sbjct: 468 NDSEDANKLLSIAESIEGLMRHVSTHAAGVVISPVPLTELVALQKGQ-GPVRLTQATMGI 526 Query: 546 VEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSET 605 VE GLVKFDFLGLR LT++ L +I + + +DI +IP DD K++++L +T Sbjct: 527 VEDIGLVKFDFLGLRNLTLLERVLSIIEQESGRR----VDIHSIPWDDVKTYELLANGDT 582 Query: 606 TAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPD 665 T VFQLES+GM+ +++ L P FED++A+ AL+RPGP+ + +I+ KH + I Sbjct: 583 TGVFQLESQGMRRVLRSLMPTEFEDIVAVNALYRPGPMD--YIQVYINGKHKKAPI---- 636 Query: 666 VQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRS 725 HE L P+L TYG+I+YQEQ+MQIA ++G++L AD+LRRA+ KK ++ K R Sbjct: 637 -NDIHEELTPILGKTYGVIVYQEQIMQIAVKMAGFSLARADLLRRAISKKNKADLEKSRG 695 Query: 726 VFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAA 785 F +GA++ G N ++A K+F L+E+FA YGFN+SH+ AY+++SYQ +LKAH+P F A Sbjct: 696 DFLKGAKEKGYNEDIANKVFQLIERFANYGFNRSHAVAYSMISYQLAYLKAHFPTAFYTA 755 Query: 786 VMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDG-EIVYGIGAIKGVGEG 844 ++++ + EK+ L+ E + + I+PP I+ F + D G + +G+ + VG Sbjct: 756 LLSSVWNTPEKLTELLQETKKRKIDIMPPSISKSGLLFTLEDHGHTVRFGLLPVSHVGVQ 815 Query: 845 PIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGD 904 + II+ + +++LFD C R + + +NRR E LI +GA D G RA L+ +L Sbjct: 816 AAKHIIDTAREA-PYKDLFDYCVRVNQRIVNRRATENLIKAGAMDEWGEDRATLLYNLDQ 874 Query: 905 ALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGH 964 A A++ Q +M G+ + E Y P Q L E+E LG+Y++GH Sbjct: 875 AYSFAEKVLSF----QDEMAGLFTLDIET--PQYEHVDPLSLQEKLSFEQEALGVYVSGH 928 Query: 965 PINQYLKEIERYVGGVRLKDMHPTE--RGKVITAAGLVVAARVMVTKRGNRIGICTLDDR 1022 PI Q + +Y + + + K + AG+V + + + TK+G+ + D Sbjct: 929 PIEQVSDVLAKYQRVLIADMIQDQKGQERKRLRIAGMVSSLKKITTKKGDPMAFLEAADE 988 Query: 1023 SGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYAR 1082 SG EV++F D +Y+ ++ + +L + G FD + + + I + Sbjct: 989 SGHCEVVVFPDVWKEYETMIREGELLFMEGA--FDHTRDKPQFLLKRSVLIQSIVAASRK 1046 Query: 1083 GLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRL 1142 + L + D L +++ L G V Y ++ R ++ + V PS+ Sbjct: 1047 EKVLYLKLK--DQSQLPDVKKLLIGDE-GATKVITYLEKE--RQTIQMQPVYEVGPSEEC 1101 Query: 1143 LNDLRGLIGSEQVELE 1158 +N L L+G EQV L+ Sbjct: 1102 MNHLMELLGREQVVLK 1117 >UniRef50_B3WE63 DNA-directed DNA polymerase III, alpha subunit n=8 Tax=Lactobacillus RepID=B3WE63_LACCB Length = 1098 Score = 1095 bits (2832), Expect = 0.0, Method: Composition-based stats. Identities = 361/1157 (31%), Positives = 583/1157 (50%), Gaps = 70/1157 (6%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F L+VHS+Y+++ + L+ A + G A+A+TD + GLV+FY AG+KP+ Sbjct: 3 FTQLQVHSNYTLLHSPLALSDLISAAKSRGYSAIALTDTNVVYGLVEFYRQAKAAGLKPL 62 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 +G + L V+A NN GY L + ++ P+ D L Sbjct: 63 LGMQIAIDDA-------KLLVIAKNNQGYHQLLKISTQIMLA----TSPVAFADLLP--L 109 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 185 GL+ ++ +++ + + + P+ ++ L DE Sbjct: 110 TGLVAITLP-DSPFSAAVVANDHNRAVAFLQELDNKQPEAVYVGL------DEAHLDTPL 162 Query: 186 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 245 A ++ L ++A +V + D +D ++ AI DG L+ + +++ + Sbjct: 163 PTFATSQQLHLMALGNVLYRDPTDAFTQKVMAAIGDGSQLNFRDPVLTDAGPWWLKPPAD 222 Query: 246 MCELF--ADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKRAKEGLEE 302 F A + A+ N +IA + +VT+ + LP + T D +++DYL K A+EGL Sbjct: 223 ASAPFVAAGLQAAVDNAAQIADQTDVTITFKQPQLPHYQTPDQLASKDYLTKLAQEGLAN 282 Query: 303 RLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGR 362 R Y +RL+ EL VI +MGF YFL+V + + ++ + G GR Sbjct: 283 RF--------HDQPIPTTYQQRLQYELDVIIKMGFADYFLVVWDVMNYAHKVNIMTGAGR 334 Query: 363 GSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMY 422 GS AGSLV+YAL IT++DP+ +DLLFERFLNP R MPD D+D +R ++I++V D Y Sbjct: 335 GSAAGSLVSYALAITEVDPIAYDLLFERFLNPARAQMPDIDLDIPDNRRGELIQYVHDKY 394 Query: 423 GRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLP 482 GR+ ++QIITFGT AK IRDV RV G + S+ IP M L A++ L Sbjct: 395 GRNHMAQIITFGTFGAKQAIRDVARVFGMSQFESNTWSRAIPNLLHMDLKTAYDQSQPLK 454 Query: 483 EIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFD 542 + + + L A LEG+ R+ HA G+V++ +TD L +G TQ Sbjct: 455 NLVADSPKNRMLFQTALALEGLPRHYSTHAAGIVLSEEPLTDTVALQPSGDGLEQ-TQVP 513 Query: 543 KSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQR 602 K DVE GL+K DFLGL+ L I+ A + + + D IPL+D+ + + R Sbjct: 514 KDDVEALGLLKMDFLGLKNLNILAAASHFVTRDTGRT----FDPKQIPLNDQPTLALFAR 569 Query: 603 SETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEIS 662 +T VFQ ES G+K+++++L+P FED++A+ AL+RPGP++ +D FI RK+G+E I+ Sbjct: 570 GDTNGVFQFESAGIKNVLRKLRPTDFEDVVAVNALYRPGPME--NIDTFIARKNGQEPIA 627 Query: 663 YPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAK 722 YPD +L+ +L+PTYG+++YQEQVMQ+A V+ G++LG AD+LRRAM KKK +A Sbjct: 628 YPD-----PALEKILKPTYGVLVYQEQVMQVASVMGGFSLGEADLLRRAMSKKKSSVLAA 682 Query: 723 QRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEF 782 ++ F EGA K G A ++ +++FA YGFN+SH+ AY++V++ +LK H PA F Sbjct: 683 EQDKFIEGAVKQGFPEATAKTVYAYIDRFANYGFNRSHAVAYSMVAFWLAYLKVHDPAAF 742 Query: 783 MAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVG 842 AA+M A M+N K+ V E + +L PDIN+ F + DG+I +G+ ++KG+ Sbjct: 743 FAALMNASMNNLPKLRTYVQEAKARQVALLGPDINTSNGGFKL-SDGKIRFGLLSVKGMR 801 Query: 843 EGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSL 902 EAI AR K G F++ DL R + K L + LI++GAFD +RA + +L Sbjct: 802 RDFSEAIFTAR-KNGPFKDFRDLLQRLEPKWLKADNFKPLILAGAFDSFDDNRAQTIANL 860 Query: 903 GDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLT 962 + + + + G + P L+ E LG+YL+ Sbjct: 861 DELINSVK------------LAGNDVGLFSVLAPKPIVVPEMPAGERLEEEANVLGVYLS 908 Query: 963 GHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDR 1022 GHP+++Y +Y L ++ G+ + LV + + TK G + D Sbjct: 909 GHPVDKYAPLKTQY----TLVNVVDLAEGRTVDILLLVRHIKRIRTKTGKPMAFVDGQDA 964 Query: 1023 SGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYAR 1082 +G + + +F + + +E D +++V+G+V + L++ + D E + Sbjct: 965 TGTVSLTVFPNLYPTL-EKIETDMVVLVNGRVE--KRNDDLQLIVNRIQDAAPLLEALPK 1021 Query: 1083 -GLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDR 1141 L I L +D + + L++ H G IPV ++ + + V+ Sbjct: 1022 AQLFIRLDADNVDART-DLLKKLQTAH--GPIPVITV--DTTSKESVLLDKRYWVTADTS 1076 Query: 1142 LLNDLRGLIGSEQVELE 1158 L+ DL G+ V L Sbjct: 1077 LMADLESRFGAANVVLR 1093 >UniRef50_B9L5T8 DNA polymerase III alpha subunit n=1 Tax=Nautilia profundicola AmH RepID=B9L5T8_NAUPA Length = 1132 Score = 1089 bits (2818), Expect = 0.0, Method: Composition-based stats. Identities = 426/1139 (37%), Positives = 659/1139 (57%), Gaps = 55/1139 (4%) Query: 7 VHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIV 66 +HSDYS++ + L KKA G ALAIT+ N+ ++FY + IKPI+ Sbjct: 2 TPFHIHSDYSLLHSTIRIKDLTKKAKEYGFNALAITELDNMFSAIEFYESCRANEIKPII 61 Query: 67 GADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNE 126 G+D +V D + L ++A N TGY NL L S +Y P + + +++ E Sbjct: 62 GSDVSVIRDG---NIHRLILIAKNKTGYDNLMYLSSISYLYNMRGDKPYLPFEEIVKNKE 118 Query: 127 GLILLSGGRMGDVGRSLLRGN----------SALVDECVAFYEEHFPDRYFLELIRTGRP 176 GL + + G L N E + Y ++ + +LE+ R Sbjct: 119 GLCFILPILESETGFHLNIFNENNILKGAAGYEKAKEILEIYRQNLNE-VYLEITR-DSK 176 Query: 177 DEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSP 236 +E ++L+ G P++A++++ F++ D+ + I + DD R R Sbjct: 177 EERLIEDDLIKLSNETGTPLLASSNIFFLNKLDYIYKDALECIENNKQFDDLHR-RPKVK 235 Query: 237 QQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFP----------TGDM 286 + Y RS+EE E+F D+PEA+ NT ++A+ N+ + LG P F Sbjct: 236 ENYFRSKEEFEEIFKDLPEAVENTDKLAESINLEIPLGNPTPPTFKFTKDYAAEEGLDID 295 Query: 287 STEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVME 346 + +Y + KEGLEERL + + EY +RL+ E+ +I +M FPGY LIV + Sbjct: 296 NDVEYFEYKCKEGLEERLKHIPEN------LHEEYRKRLDYEIDIIKRMKFPGYMLIVWD 349 Query: 347 FIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 406 F++ +K +PVGPGRGS AG+LVAY+L+IT++DPL + LLFERFLNPERVSMPD D+DF Sbjct: 350 FVREAKKRKIPVGPGRGSAAGALVAYSLQITNIDPLRYGLLFERFLNPERVSMPDIDMDF 409 Query: 407 CMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPD 466 C E+R ++IE+V + YG+ V+Q+ITFG++ AK V+RDV R+ G Y DR KLIP Sbjct: 410 CQERRGEIIEYVREKYGKVNVAQVITFGSLLAKGVLRDVARIFGIDYSEADRFVKLIPDQ 469 Query: 467 PGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 G+TL KA E EP++ EI E D L LEG+ RN G HA GVVI+ ++ + Sbjct: 470 LGITLEKAKELEPKIVEITEEDPLYNRLYSFGEHLEGLKRNTGMHAAGVVISDEELWKKS 529 Query: 527 PLYC-DEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLD 585 PLY DE VTQ+ + +E L+KFDFLGL+TLT+I+ A++ + N ++ Sbjct: 530 PLYRQDEHDDTIVTQYSLNYLEPVDLIKFDFLGLKTLTVIDRAVKNVK----FNKNEDIN 585 Query: 586 IAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQS 645 I + LDD K F+++Q T +FQ+ES GM+DL KRL+P FED+IA++AL+RPGP+ S Sbjct: 586 IDLLTLDDPKVFELIQSGHTLGLFQIESDGMQDLAKRLKPTNFEDIIAMLALYRPGPMDS 645 Query: 646 GMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGA 705 GM+D++IDRKHGR+ +SY +++ E LKP+LEPTYG+I+YQEQVMQI Q + G++LG + Sbjct: 646 GMLDDYIDRKHGRKPVSYFFDEFE-EVLKPILEPTYGVIVYQEQVMQIVQAIGGFSLGES 704 Query: 706 DMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYA 765 D++RRAMGKKK + M K FA+ A++ G + + A +F+L+EKFAGYGFNKSHSAAYA Sbjct: 705 DIIRRAMGKKKFDLMKKYAEEFAQRAQQRGFSYDNAKSLFELIEKFAGYGFNKSHSAAYA 764 Query: 766 LVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHV 825 +++YQT +LK +YP EF++A++T + +NT+K+ ++E +G+++LPP++N F Sbjct: 765 MITYQTAYLKTYYPTEFLSALLTYEAENTDKIAKYIEEAKVLGIEVLPPNVNKSNAEFTP 824 Query: 826 NDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMS 885 +D I++G+ AIKGVG IE+I+ R + L D + DT K+N++VLE+LI + Sbjct: 825 IEDK-ILFGLSAIKGVGSKAIESIVANR----PYESLEDFILKVDTSKVNKKVLEQLIKA 879 Query: 886 GAFDRLGPHRAALMNSLGDALKAADQ--HAKAEAIGQADMFGVLAEEPEQIE-QSYASCQ 942 GA D G R A+++ + + L+ + K + +F + E E E + Sbjct: 880 GAMDDFGLSRKAMLSRVEEILEFKKRVEEKKNAINHEHSLFADMEENEEIDEHLDIPNTV 939 Query: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVA 1002 + + +L+ E +TLG Y++ HP++ Y ++ L + G + A Sbjct: 940 EFDIKTLLEYEYQTLGFYVSAHPLDPYKDRMKGI--NYNLSSEVEEIISQEALFVGKIDA 997 Query: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGG 1062 +V ++K+GN+ I TL D G+++VM+F L+K + D + + QV D Sbjct: 998 MKVRISKKGNKFAIATLMDFHGKIDVMIFERDLEKLNE-FNLDEPIAIKAQV--DKVGEF 1054 Query: 1063 LKMTAREVMDIDEAREKY-ARGLAISLTDRQID---DQLLNRLRQSLEPHRSGTIPVHL 1117 L++T R++M ++EA+E+ A I++ RQI ++ L ++ L + V L Sbjct: 1055 LRVTCRKLMTLEEAKEEKGAVKDEITVIQRQIGENYEEDLLKIHSELTKNPGNKRAVLL 1113 >UniRef50_C3CTJ5 Putative uncharacterized protein n=1 Tax=Bacillus thuringiensis Bt407 RepID=C3CTJ5_BACTU Length = 1237 Score = 1089 bits (2817), Expect = 0.0, Method: Composition-based stats. Identities = 400/1195 (33%), Positives = 639/1195 (53%), Gaps = 70/1195 (5%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 R+V L H+ YS++DG K +V K A AITD + G + FY A KP Sbjct: 73 RYVSLHGHTGYSLLDGATKIHEMVAKTE----WASAITDHGVMYGTLDFYKKMKKANKKP 128 Query: 65 IVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL 124 I+G + ++ E H +LA N TGY+NL L S + P + +WL + Sbjct: 129 ILGFEAYIETLDGKKEGKHQLLLAINATGYRNLVKLTSMGF--ENKYYKPHVKLEWLEKY 186 Query: 125 NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRTGRPDEESYLH 183 +EG++ S G V +++++G+ L + V + F + Y++E+ R G +EE Sbjct: 187 SEGVVSTSSCLGGLVPQAIIKGDMDLARKTVQKMIDIFGKENYYIEIQRHGCEEEEVVNP 246 Query: 184 AAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSE 243 A ++LAE GL +AT+D + + D HEI + I T+DDP R ++ + Sbjct: 247 ALLQLAEEFGLKAIATSDSHYTEIEDASVHEILLCIGTKTTMDDPNRMVFPGSGYHIHTS 306 Query: 244 EEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM--STEDYLVKRAKEGLE 301 EEM +LF D+PE L NT+++A+R N+ ++LGE +LP+FP + S DY A EG Sbjct: 307 EEMEDLFWDMPELLDNTLDLAERINIDIQLGEIYLPEFPLPEGFESQADYFEHLAWEGFA 366 Query: 302 ERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPG 361 +R ++ + EY ERL E++ I MGFPGYF+IV +FI+++K+ G+ VGPG Sbjct: 367 KRFKG------QKEFKSKEYRERLTFEIETIKTMGFPGYFVIVWDFIRFAKERGILVGPG 420 Query: 362 RGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADM 421 RGS GSLVAYAL ITD+DP+ + L+FERFLNP+R+SMPD D+DF +R++VI++V ++ Sbjct: 421 RGSACGSLVAYALDITDIDPIPYGLIFERFLNPDRISMPDIDIDFEDTRREEVIDYVKEL 480 Query: 422 YGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQL 481 YG +AVS+IITFGT+AAK +RDV RVL P G + I+ IP PGMTL KA P+ Sbjct: 481 YGEEAVSRIITFGTLAAKVSVRDVARVLDKPLG--NMIANAIPEKPGMTLNKALNESPEF 538 Query: 482 PEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAP---LYCDEEGKH-P 537 +Y +D EVK ++D+A ++EG+ RN +HA GV+IAP+ +TD P L + G + Sbjct: 539 YNMYHSDAEVKEIVDIALRIEGLPRNVSQHACGVIIAPSAVTDHIPQVLLENTDTGAYEH 598 Query: 538 VTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSF 597 TQ++K + E GL+K DFLGLRT+ ++ A INK+R + G P+ + +IPLDD + + Sbjct: 599 TTQYNKDECEEMGLLKMDFLGLRTMGVMGRAFIDINKKRKELGLEPITLESIPLDDIRVY 658 Query: 598 DMLQRSETTAVFQLESRGMKDLIKRLQPDC-----------FEDMIALVALFRPGPLQSG 646 + + + T VFQLES GM + + L D FE +IA ++L+RPGPL Sbjct: 659 EYIAKGNTAGVFQLESAGMTNFMMELFQDAHTLDAEMGKQLFERLIAGISLYRPGPLDE- 717 Query: 647 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 + N+I E I Y L+P+LE TY II+YQEQ M I + L+ +T G +D Sbjct: 718 -IPNYIKNMLKPEGIEYDV-----PQLQPILETTYNIIVYQEQCMFIVRELANFTRGQSD 771 Query: 707 MLRRAMGKKKPEEMAKQRSVFAE--------GAEKNGINAELAMKIFDLVEKFAGYGFNK 758 +R+ M KK + + F G NGI+ +A+ +++ ++KF Y FNK Sbjct: 772 TIRKGMAKKVEALLNEYGEYFVHGSEEKGITGCVANGIDEHIAIALWERMKKFGRYAFNK 831 Query: 759 SHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINS 818 SH+ YA ++ +T +L +YP E+M A + + + ++K+ + R + +LPPD+N Sbjct: 832 SHATGYANIAIKTGFLAYYYPTEYMCATLNSFITMSDKIKAYMAVSKRQKIDVLPPDVNK 891 Query: 819 GLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCART-DTKKLNRR 877 F V + I +G+ I+ +G+ I +IE R+ G FR D R +K++RR Sbjct: 892 SREVFTVEGN-SIRFGLQGIRNMGKISI-RLIEERDTRGDFRNFQDCAVRMAKYQKVDRR 949 Query: 878 VLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQS 937 VLE LI SGA D R + + L L A Q K GQ +F + ++I + Sbjct: 950 VLEALIFSGAVDSFEGTRNSKLMMLDALLLVASQERKDYQSGQLSIFDIPLLSQDKIREV 1009 Query: 938 Y-ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEI--ERYVGGVRLKDMHPTER---- 990 + + L+ E+E G Y++ HP++ Y + E + L+D + Sbjct: 1010 LTPTLTEFNIDFKLEKEKEFAGFYISAHPLDSYETLLAEEEFCEIGFLQDTDEKDEADRV 1069 Query: 991 ---GKVITAAGLVVAARVMVTKR-GNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDR 1046 K I AG++ TK+ + + L+D +G ++ + F++ L++ LL + Sbjct: 1070 RSYKKSIRVAGIITEIETYYTKKDNKPLNVFKLEDTTGEIKCVAFSNVLEQSAGLLHEGS 1129 Query: 1047 ILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLN--RLRQS 1104 I+ V G+ DD G ++ + V+DI + + L R +++ ++R Sbjct: 1130 IIAVEGKFEEDDR--GTQIMVKRVIDIHDVGNDGNPKEIVLLGSRNVNNARKQFVKVRDY 1187 Query: 1105 LEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSEQVELEF 1159 L+ + S V +Y+ ++ F + ++ ++ ++G + + + Sbjct: 1188 LKEYESEDSTVPVYFIFGGNTYKVNFTH-----FNLTMITQMQEIVGKQNCRVNY 1237 >UniRef50_Q38WU5 DNA-directed DNA polymerase III, alpha subunit n=25 Tax=Lactobacillales RepID=Q38WU5_LACSS Length = 1110 Score = 1089 bits (2817), Expect = 0.0, Method: Composition-based stats. Identities = 374/1158 (32%), Positives = 609/1158 (52%), Gaps = 58/1158 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FV L+V S Y++++ K LV A A G +LA+TD + GLV FY A A IKP+ Sbjct: 3 FVQLQVKSTYTLLESTTKITDLVTAAKARGYQSLALTDKNVVYGLVDFYKAAKAADIKPL 62 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 +G V + DE L +LA N TGYQN+ + +K + ++ + + L Sbjct: 63 LGITIEVGGLIQTDERFPLILLAKNLTGYQNILKISTKIMTQSE-----LVPFEAVQSLL 117 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRTGRPDEESYLHA 184 + L++++ + G++ R LL+ ++ + + D +L + + Sbjct: 118 QQLVVITPSQDGELVRLLLQNDATAAQTYIERLKAVVDADSLYLGISAKQAASRQRV--P 175 Query: 185 AVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEE 244 +L++ +P+VA DVR+++ D A ++ I G ++ ++ + Sbjct: 176 LGQLSQQTAVPLVALGDVRYLEPEDAFAVQVLQHIKAGTQVNLQTP--QAPGGYFLEDVQ 233 Query: 245 EMCELFA--DIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKRAKEGLE 301 + F + EA+ANT +IA +C V + LPQF T S YL ++++ GL+ Sbjct: 234 QATAAFEALQLAEAVANTQKIAAQCQVDLSFKRAQLPQFETPAGQSAATYLKQQSQAGLQ 293 Query: 302 ERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPG 361 R Y RL+ ELQVIN+MGF YFLIV + +Q++ + GPG Sbjct: 294 ARFKT--------QPIPETYQTRLDYELQVINEMGFADYFLIVADVMQYAHQQNIMTGPG 345 Query: 362 RGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADM 421 RGS AG+LVAYAL+ITD+DP+ + LLFERFLNP R +MPD D+D +RD+V+++V Sbjct: 346 RGSAAGALVAYALRITDVDPIRYQLLFERFLNPNRANMPDIDLDIPDNRRDEVLDYVYQK 405 Query: 422 YGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQL 481 YG++ ++QIITFGT+AAK ++DVGRV G + SK IP +TL +A++ Sbjct: 406 YGQNHMAQIITFGTLAAKMALKDVGRVFGLSQFEMSAWSKAIPNVLKITLQEAYDQSQAF 465 Query: 482 PEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQF 541 + ++ + L + A+++EG+ R+ HA G+V++ +T+ L + TQ Sbjct: 466 KNLVADSQQNRLLFETAQRIEGLPRHYSTHAAGIVLSQAPLTETVALQSGGDEIEL-TQL 524 Query: 542 DKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQ 601 +VE GL+K DFLGLR L I+ +++++++ + P + IPLDD + + Q Sbjct: 525 PMGNVEELGLLKIDFLGLRNLGILANIVKLVSQQTGQ----PFNPQNIPLDDPATLALFQ 580 Query: 602 RSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEI 661 + +T +FQ ES G+K++++RL+P FED++A AL+RPGP++ +D FIDRK G+ + Sbjct: 581 QGDTNGIFQFESTGIKNVLRRLKPTSFEDIVATDALYRPGPME--NIDTFIDRKSGKVPV 638 Query: 662 SYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMA 721 +YPD +SL +L+PTYGI++YQEQVMQ A + G+TLG AD+LRRAM KKK + Sbjct: 639 TYPD-----DSLAEILQPTYGILVYQEQVMQAASKMGGFTLGEADILRRAMSKKKKAVID 693 Query: 722 KQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAE 781 R+ F EGA G + A ++D +E+FA YGFN+SH+ AY+ +++ +LK H P Sbjct: 694 ASRTKFIEGALALGHTEQAATTVYDYIEQFANYGFNRSHAVAYSKIAFWLAYLKVHQPEA 753 Query: 782 FMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGV 841 F AAV+ A ++ K + E + L +LPPDIN +F V D G I++G+ +IKG+ Sbjct: 754 FFAAVLNAVLNQGTKTKTYLAEAKKRQLSVLPPDINLSQRYFKVTDAG-IIFGLYSIKGL 812 Query: 842 GEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNS 901 + AI++ GG F+ + R D K L + L LI SGAFD+ P+R Sbjct: 813 RRDFVAAILDEHQTGGPFKSVLQFLQRLDAKYLKKEALVALIYSGAFDQFNPNRN----- 867 Query: 902 LGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYL 961 A + + + G E + + LD E E LG YL Sbjct: 868 -------ALLMNLDDLLDSVKLAGDNMSLFEILAPKEKTVSNLTLTERLDKEAEYLGAYL 920 Query: 962 TGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDD 1021 +GHP+ +Y + RY + D+ P + + V +V+ TK+G ++ T D Sbjct: 921 SGHPVEKYERV-RRYYHVPEVSDLAP---NQNVRLVLFVRRIKVIRTKKGEQMAFVTGQD 976 Query: 1022 RSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYA 1081 +G + V LF + L K+++++V G+ L++ ++M ++A++ Sbjct: 977 ATGEISVTLFASVYRQVADWLTKEQVILVIGKTEQRQ---ELQLIGNQIMLAEQAQKGLP 1033 Query: 1082 R-GLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSD 1140 + L + L+ + + ++ Q LE R G IPV LY + + + + ++ + Sbjct: 1034 KATLYLRLSAD-LTREQQQKMYQLLEKSR-GPIPVILY--NSATKKSILLNERYWIANDE 1089 Query: 1141 RLLNDLRGLIGSEQVELE 1158 +L L L+G V L+ Sbjct: 1090 KLTTALTTLLGPTNVILK 1107 >UniRef50_D0RP61 DNA polymerase III subunit alpha n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RP61_9RICK Length = 1139 Score = 1089 bits (2817), Expect = 0.0, Method: Composition-based stats. Identities = 413/1164 (35%), Positives = 645/1164 (55%), Gaps = 39/1164 (3%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS ++L++HS +S+ +G K LV + A+ + D NL G ++F Sbjct: 1 MSAEA-INLKIHSQFSICEGAIKIDKLVNYCKEHSVTAVGLCDSENLSGALEFSSQLKKE 59 Query: 61 GIKPIVGADFNVQCDLLGDELT-HLTVLAANNTGYQNLTLLISKAYQRGYGAA-GPIIDR 118 GI+P++G ++ ++ G ++ A N GY+NL L SK+Y P I+ Sbjct: 60 GIQPLIGTKIYIKENVDGKITYGTASLYAKNQIGYKNLLKLSSKSYLDLQEHDDKPNINL 119 Query: 119 DWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDE 178 + L + +EG+I+L GG L++ V ++ F D ++E+ R E Sbjct: 120 NILKKYHEGIIILIGGSFSFFSDLLVKNKDEYCFNEVKKLKDIFNDNIYIEIQRHNESHE 179 Query: 179 ESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQ 238 + ++L+ +P++ATN+V +++ ++AH+ + + + +++ R + + Q Sbjct: 180 KQLEKKLIKLSSDTSIPLIATNEVFYLEQDSYNAHDAFICVGEKNYVNEKNRLKYSN-QH 238 Query: 239 YMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKE 298 Y + E LFAD+P+AL N + N + LP F T L +A++ Sbjct: 239 YFKKTSEFENLFADLPDALENNKNFKYKFNYFPKKSNPLLPSFSENGKDTNQILKDKAEK 298 Query: 299 GLEERLAFLFPDE----EERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDN 354 GLEERL ++ + + Y +RL E+ VI++M F GYFLIV ++I W+K N Sbjct: 299 GLEERLEKYVYPRLGATTDKDEIKKNYFDRLNYEVNVISKMKFSGYFLIVSDYINWAKSN 358 Query: 355 GVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQV 414 +PVGPGRGSGAGSLVA+ L ITDLDP+ F L+FERFLNP+R+SMPDFD+DFC E RD+V Sbjct: 359 NIPVGPGRGSGAGSLVAWCLSITDLDPIRFGLIFERFLNPDRISMPDFDIDFCQEGRDEV 418 Query: 415 IEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGM--TLA 472 I +V D Y + V+QIITFG + A+ +RD+GRVLG PYG VD++ K+IP DP +LA Sbjct: 419 INYVKDKY-PNKVAQIITFGKLQARMALRDIGRVLGLPYGRVDQLCKMIPFDPSRPLSLA 477 Query: 473 KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDE 532 ++ EP+L E + D +K LI+ A KLEG+ RN HA GVVI + + PLY D Sbjct: 478 ESIAIEPRLQEAEKNDPIIKKLINYALKLEGLYRNVATHAAGVVIGDRNLDEIVPLYKDL 537 Query: 533 EGK--HPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIP 590 PVTQFD E AGLVKFDFLGL+TLT+I +E I K +A DI+ I Sbjct: 538 SSTLPIPVTQFDMKSSEEAGLVKFDFLGLKTLTVIKKTIEFIQKDKA-----DFDISKIN 592 Query: 591 LDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDN 650 L D+K+F++L ET +FQLES GM++++K+L+P+ FED+IALVAL+RPGP+Q + Sbjct: 593 LSDQKTFELLSSGETMGIFQLESSGMREVLKQLKPNKFEDIIALVALYRPGPMQ--NIPT 650 Query: 651 FIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRR 710 +I RKH +EE+ Y H L+ +L+ TYG+I+YQEQVMQIAQ LS ++ AD+LR+ Sbjct: 651 YISRKHEKEEVDY-----IHPKLENILKETYGVIIYQEQVMQIAQALSSFSASKADILRK 705 Query: 711 AMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQ 770 AMGKKK EM +Q+ F +GA KNGI+ + + IF LVEKFA YGFNKSH+AAYAL+++Q Sbjct: 706 AMGKKKSVEMERQKKDFIDGAVKNGISRDQVIYIFQLVEKFAQYGFNKSHAAAYALIAFQ 765 Query: 771 TLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGE 830 T +LK HYP F A M ++ NT+K+ +E R+ + I PP+IN F + D Sbjct: 766 TAYLKTHYPIYFFCASMNTELSNTDKLNLFYEELKRLKIDIRPPNINFSYAEF-LPRDKT 824 Query: 831 IVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDR 890 I Y + A+K VG I I+ R K G F + + +R ++K LN+ LE LI SG+ D Sbjct: 825 IYYALSAVKAVGYDTISKIVYEREKNGKFNSISEFLSRVESKNLNKLQLEGLIKSGSLDI 884 Query: 891 LGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVL 950 L +R L ++ + +K + K Q +F E + Q + + W + + Sbjct: 885 LDNNRKKLFENVPEYIKQSKSSDKVNDNEQDQLFSNEMENDQTNIQEF-NILDWDKNEKI 943 Query: 951 DGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKR 1010 E E++G ++ HP+ L+ +++Y +++ K AG +++ + T + Sbjct: 944 KKEFESIGFFVGEHPLKSNLQVLKKY-NVSSHQELKNNNALKDAMIAGTLISIQEKKTAK 1002 Query: 1011 GNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREV 1070 GN I L D E+ +F++ L + + L +V + + ++ + Sbjct: 1003 GNPYAIIKLVDLGSMYELFIFSEKLVENRSDLVVGNSFLVKVKKEITKENIE-RINLENI 1061 Query: 1071 MDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARAR-LR 1129 ID+ + + ++ + + + D + +RL + G+ V++ Y+ +++ + Sbjct: 1062 FLIDDLKNQIIDKVSFEIDNIKSLDVIKSRL------NEKGSSNVNIIYKDKNSKKYSFK 1115 Query: 1130 FGATWRVSPSD-RLLN--DLRGLI 1150 + V SD L ++ + Sbjct: 1116 LDHKFNVRHSDIEFLENYQIKPIF 1139 >UniRef50_Q8CXA8 DNA polymerase III (Alpha subunit) n=1 Tax=Oceanobacillus iheyensis RepID=Q8CXA8_OCEIH Length = 1106 Score = 1086 bits (2810), Expect = 0.0, Method: Composition-based stats. Identities = 397/1164 (34%), Positives = 623/1164 (53%), Gaps = 64/1164 (5%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS F HL + S YS+++ L+ KA ALA+TD L G + FY A Sbjct: 1 MS---FTHLYIKSGYSLMESTITIPKLIDKAKQERQEALALTDIGVLYGAISFYKACIDN 57 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 GIKPI+G V+ + +E +LA NN GYQNL L + G +++ Sbjct: 58 GIKPIIGLTVMVKDE-QLNETVPCVLLAKNNNGYQNLISLSTNININGNEE----VEKSL 112 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRTGRPDEE 179 L + ++ + G + + + + + + F D +++ + R Sbjct: 113 LDNYTDDIVGILPVTTG-----MEKVFTEELGTYFSSWSNLFSDDDFYIGVDRHSLE--- 164 Query: 180 SYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQY 239 ++ ++ +P+ + +VR++ +D A++ AI G D + + + Q + Sbjct: 165 -----VIQSLQSLSIPLTSIQEVRYLHENDHIAYDCLQAIRYGEKWDGTE-INSKNKQLH 218 Query: 240 MRSEEEMCELFADI-PEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKRAK 297 +E+EM +LF I PEALANT I +CN+ + + E ++P FP + + + YL + Sbjct: 219 FTTEKEMEDLFQYIAPEALANTERIKDKCNLEINMNERYIPSFPVPNSLTADSYLQQLCI 278 Query: 298 EGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVP 357 +EER R + RL EL+VI M + YFLIV +FIQ++KDN + Sbjct: 279 SKIEERYKE----------RNDQIMNRLNYELEVIQSMNYSDYFLIVADFIQYAKDNQIA 328 Query: 358 VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEH 417 VGPGRGS AGS+VAY L IT++DPLE++LLFERFLNPER+SMPD DVDF +RD+VI++ Sbjct: 329 VGPGRGSSAGSIVAYLLGITEVDPLEYNLLFERFLNPERLSMPDIDVDFSDVRRDEVIDY 388 Query: 418 VADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEA 477 V + YG+D V+QIITFGT AA++V+R++ + L ++ + K IP +L + Sbjct: 389 VREKYGQDHVAQIITFGTFAARSVLRELMKTLDVHEMDMNYVMKEIPTQSNRSLTDILKE 448 Query: 478 EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHP 537 + +L + +K L +A KLEG+ RN HA GVVI+ K+T+ PL + Sbjct: 449 KEELKAYVKQSSRLKLLFSIAVKLEGIPRNVSTHAAGVVISEKKLTNHVPLTIGTNQTYL 508 Query: 538 VTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSF 597 TQ+ ++E GL+K DFLGLR L++I I R ++ L +A IP D+ +F Sbjct: 509 -TQYAMGELETIGLLKMDFLGLRNLSLIEKVNTAITNSRHRS----LQLAEIPEQDEATF 563 Query: 598 DMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHG 657 +L++ T VFQLES GMK +++ L P FED++A+ AL+RPGP+ + +I RK Sbjct: 564 QLLRKGHTNGVFQLESDGMKKVLQELMPSTFEDIVAVNALYRPGPMD--FIPTYIRRKKN 621 Query: 658 REEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKP 717 E +SYP H LKP+L TYG+++YQEQ+MQIA V++G+TLG AD+LRRA+ KKK Sbjct: 622 VEPVSYP-----HPDLKPILSKTYGVLIYQEQIMQIANVIAGFTLGEADILRRAVSKKKE 676 Query: 718 EEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAH 777 +M KQ+ F +G G E+A +IF + +FA YGF +SH+ AY+ +SYQ ++KAH Sbjct: 677 SDMYKQKQAFIDGCINRGYKKEVADEIFSWIVRFANYGFPRSHAVAYSKISYQLAYMKAH 736 Query: 778 YPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGA 837 YP F A +++ + EK+ + E ++ ILPPDIN + V +I G+ A Sbjct: 737 YPNAFYAELISGVRNQQEKINTYIQEFKKLNGNILPPDINKSYGKYAVE-RKDIRMGLSA 795 Query: 838 IKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAA 897 IKG+G PI+ I++AR K G F+ FD C R + K ++R ++E L++ G FD + +RA+ Sbjct: 796 IKGIGIQPIQEILQAR-KDGTFKNFFDFCMRVNLKIVSRTIIENLVLVGVFDSIYRNRAS 854 Query: 898 LMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETL 957 L+ S+ A++ + E + Q +F E E SY + + + L E+E L Sbjct: 855 LLASIDQAIE--QKELFKEFLDQPSLFQDQIEMVE----SYTEIEDFTKIKKLSDEKELL 908 Query: 958 GLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGIC 1017 G Y++ HP+ +Y K++ KVI A +V A +V+ TKRG+R+ Sbjct: 909 GFYVSSHPLKEYRKKLRSAGNITLSHAKKLVNTRKVIHAVVIVDAMKVIRTKRGDRMAFL 968 Query: 1018 TLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEA- 1076 T+ D ++ +LF D + +E+ +L +SG V D L++ + E+ Sbjct: 969 TISDEELEIDAVLFPDLFRQISNKVEEGMLLQISGVVE--DRKQRLQIVIQSGHPFQESE 1026 Query: 1077 --REKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATW 1134 R + + + I T Q++ +LRQ L G IP+ +Y D + R + Sbjct: 1027 LERHEPSGEVFIR-THSSKRTQVIEKLRQ-LAELEPGEIPIIVY--DRDLKQSYRLSEHY 1082 Query: 1135 RVSPSDRLLNDLRGLIGSEQVELE 1158 + ++ L G G E V ++ Sbjct: 1083 SLRVDRKVQKQLEGFFGKENVAVK 1106 >UniRef50_B3XXI1 Putative DNA polymerase III, alpha subunit n=1 Tax=uncultured bacterium RepID=B3XXI1_9BACT Length = 1317 Score = 1086 bits (2809), Expect = 0.0, Method: Composition-based stats. Identities = 394/1145 (34%), Positives = 614/1145 (53%), Gaps = 88/1145 (7%) Query: 1 MSEP-RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59 MS+ FVHL VHS+YS++DGL++ LV++A LG PA+A+TD + G + FY A Sbjct: 1 MSDQGTFVHLHVHSEYSLLDGLSRINDLVERAVELGQPAIALTDHGAMYGTMPFYRACKS 60 Query: 60 AGIKPIVGADFNVQCDLLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAA 112 G+KPI+G + + + D+ H+ +LAAN TGY NL + S+A GY Sbjct: 61 GGVKPIIGIETYLAMRSMQDKDAQRDKERFHMLMLAANQTGYMNLLEVASRAQLDGY-YY 119 Query: 113 GPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELI 171 P IDR+++ +EG+I +G ++ R++ GN AL D+ + Y + F DR F+EL Sbjct: 120 KPRIDRNFMAAHSEGIIATTGCMAAEIPRAIGAGNMALADKLMGEYVDIFGTDRLFVELQ 179 Query: 172 RTGRPDEESYLHAAVELAEARGLP--VVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPK 229 P+ + +E+A GL +ATNDV + ++D + HE+ + I G T++ PK Sbjct: 180 EHSIPELTTINQKLIEMAPRFGLQNNFLATNDVHYTRAADANPHEVLLCIQTGSTVNAPK 239 Query: 230 RPRNYSPQQYMRSEEEMCELFA--DIPE-----ALANTVEIAKRCNVTVRLGEYFLPQFP 282 Y++S +EM LF PE +L N++ I + C+V + Y LP+F Sbjct: 240 -LTFSDKGYYLKSYDEMFNLFRQNGYPEDIVLNSLRNSLAIVEMCDVNLDSKGYHLPEFD 298 Query: 283 TGDM-STEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYF 341 + YL ++GL R ER + + RLE EL +I +MGF YF Sbjct: 299 VPEGYDAHGYLRHLCEQGLIWRYGE------ERARNDEDLRARLEHELNIITRMGFDTYF 352 Query: 342 LIVMEFIQWS----------------------KDNGVPVGPGRGSGAGSLVAYALKITDL 379 LIV + +W+ K++ + RGSGAGS+VAY L IT + Sbjct: 353 LIVWDLCEWAVRSDAWWETHGDPYPYESYTDWKEHDIW-WNVRGSGAGSVVAYTLGITSI 411 Query: 380 DPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAK 439 DPL L+FERFLNP RVSMPD D+D+ + R Q++ + YG + V+QIITFGTM A+ Sbjct: 412 DPLVNGLIFERFLNPGRVSMPDIDLDYPDDVRGQMVAYTKRRYGEEKVAQIITFGTMGAR 471 Query: 440 AVIRDVGRVLGHPYGFVDRISKLIPPDPGMT--LAKAFEAEPQ-----LPEIYEADEEVK 492 A IRDVGR L P VD +++L+P PG + + + + L + Y+ + VK Sbjct: 472 AAIRDVGRALDMPLPDVDGVARLVPAIPGKPVKIKNVLDPDHEFYSAELTDRYKRESAVK 531 Query: 493 ALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKH------PVTQFDKSDV 546 L+D A LEGV R+A HA GV+++ + ++ PL G VTQ+ V Sbjct: 532 TLLDTATNLEGVARHASSHAAGVIVSDRPLQEYVPLNRPTSGDEGLGGVDRVTQWPMEIV 591 Query: 547 EYAGLVKFDFLGLRTLTIINWALEMINKRRAKNG---EPPLDIAAI---PLDDKKS-FDM 599 E GL+K DFLGL TLT++ A +I +R P D I P D + FDM Sbjct: 592 ESIGLLKVDFLGLSTLTVMRRAARLIEERYGTVYTMDNIPYDEGHIGPDPERDPELLFDM 651 Query: 600 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 659 L R + VFQ+E GM+ L+ ++P F+ +IA ++L+RPGP++ + +I R H Sbjct: 652 LGRGDVAGVFQVEGAGMRRLMMEMKPRRFDHIIAAISLYRPGPME--NIPEYIRRMHSSI 709 Query: 660 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 719 + V++ +L+P+L+ TYGI++YQEQ+++IA L+GY G ADM+R+A+ KKK + Sbjct: 710 YDNKDIVEYHTPALEPILKDTYGILVYQEQIIRIASDLAGYAPGDADMIRKAVAKKKKKL 769 Query: 720 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 779 M + R F EGA + G + E+ I+ +E FA YGFNK+H+A YA V+ QT +LKAHYP Sbjct: 770 MEEHRIKFTEGAMERGFSREVCEAIWGDIEFFARYGFNKAHAADYAKVTCQTAFLKAHYP 829 Query: 780 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDD---GEIVYGIG 836 E++AA+++ + DNTEKV E +G+ I PPDIN F + DD I +G+G Sbjct: 830 VEYLAAMLSVERDNTEKVRRYFAEAKNLGIDIEPPDINRSDLDFTIEDDHERPCIRFGLG 889 Query: 837 AIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRA 896 AIK GE + I++ R G F +L DL R D +++ +R LE +I + F+R G Sbjct: 890 AIKNAGEAALNLILDERRANGTFADLQDLSERVDLRRVGKRALEFMIKARVFERWG-TMP 948 Query: 897 ALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIE---------QSYASCQPWPEQ 947 + +L + + + +A A GQ +FG L + S +P P + Sbjct: 949 QFLEALDRIVADSSKTHEAAAAGQMSLFGALGGSNGGNGGMKLTADLLKPVDSLEPIPHK 1008 Query: 948 VVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMV 1007 +L+ E+E LG++++ HP+ + L + + + + T GK + AG++ R + Sbjct: 1009 QMLEWEKEALGVHVSEHPMERPLAMLTSHTSA-TIGGLDITMNGKQVRIAGMISTLRTLT 1067 Query: 1008 TKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTA 1067 TK+G+ + TL+D +++++LF + + D++++V+G+V L + Sbjct: 1068 TKKGDPMAFATLEDMDNKIDLVLFPRTWKATRDQVVVDQVMLVTGKVQVK--GEDLNLIV 1125 Query: 1068 REVMD 1072 + Sbjct: 1126 DSIST 1130 >UniRef50_C7NEL3 DNA polymerase III, alpha subunit n=3 Tax=Leptotrichia RepID=C7NEL3_LEPBD Length = 1185 Score = 1085 bits (2806), Expect = 0.0, Method: Composition-based stats. Identities = 411/1209 (33%), Positives = 660/1209 (54%), Gaps = 78/1209 (6%) Query: 3 EPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGI 62 E +FVHL++H++YS+++G+ K V+KA G+ ALAITD ++ G ++F+ AGI Sbjct: 2 ENKFVHLKLHTEYSLLEGVGKIDEYVEKAKKTGVKALAITDT-SMFGAIEFFKKCKNAGI 60 Query: 63 KPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLI 122 KPI+G + + E LT+LA N GY+NL+ L S +Y R + I D L Sbjct: 61 KPIIGLEVFLDGLEKVGE-FSLTLLAKNQNGYKNLSKLSSISYSR-FTRNRNKIKYDELK 118 Query: 123 ELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYL 182 + ++ L +LSGG +V + +L + V V + F D +F+E+ R ++ + Sbjct: 119 KYSDDLYILSGGINSEVVKGILDLENTQVRRVVEKLGKDFGDNFFIEVPAVERLEKARKM 178 Query: 183 HAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNY--SPQQYM 240 + V TNDV + + D +I +I +G +D K + Y+ Sbjct: 179 LFDIVRKNKFD-NFVITNDVYYPNRKDAVLQKIVESIKEGSKIDTEKSENSEILYDDLYL 237 Query: 241 RSEEEMCELFA------DIPEALANTVEIAKRCNVTVRLGEYFLPQFPTG-DMSTEDYLV 293 +SE E+ + F + N +I + CNV + P++ ++S +++L Sbjct: 238 KSENEIEKSFENKEYSEFYETGINNVEKIMENCNVDFEFHHFKFPKYSLPQNISEKEFLR 297 Query: 294 KRAKEGLEERL----------------------------------AFLFPDEEERLKRRP 319 EGL + + EE Sbjct: 298 NLVFEGLFHKYLKKSVSDSEKLQLDKNFEIIQKEIAKDEIAGQKLKEVKIREELLKNNLE 357 Query: 320 EYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDL 379 ER E EL++I++MG+ GYF+IV +FI++S++NGV VGPGRGS AGS+V+YAL IT++ Sbjct: 358 NVLERAEYELEIIDKMGYNGYFIIVWDFIKFSRENGVYVGPGRGSAAGSIVSYALNITEI 417 Query: 380 DPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAK 439 DPLE++L+FERFLNPER+SMPD D+DF E+R+ VI +V + YG + V+ IITFGT+ A+ Sbjct: 418 DPLEYNLIFERFLNPERISMPDIDIDFDQEQREIVINYVVNKYGAEYVAHIITFGTLKAR 477 Query: 440 AVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMAR 499 IRDVGRVL VD+I+K+IP L A P+ ++Y D E+K +ID + Sbjct: 478 LAIRDVGRVLNVSLVKVDKIAKMIPF--NTELKDALNNIPEFRKMYGTDREIKKVIDYSL 535 Query: 500 KLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGL 559 KLEG R+A HA GVVI+ ++D P Y D + K TQ+ ++E G++K DFLGL Sbjct: 536 KLEGKVRHASVHAAGVVISKDVLSDEIPTYSDGKTKIVSTQYQMKELEELGILKMDFLGL 595 Query: 560 RTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDL 619 + LTI+ +E I KRR + + IPL+D+K++++L +++T VFQ ES G++ L Sbjct: 596 KNLTILRKTVENIEKRRK----TKIVLNDIPLNDEKTYELLTKADTMGVFQCESAGIRSL 651 Query: 620 IKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEP 679 +K+++ + FED+IAL+AL+RPGPL+SGMVD+FI+ K+ R EI Y D +SLK +LE Sbjct: 652 MKKMKIEKFEDIIALLALYRPGPLRSGMVDDFINVKNNRTEIKYID-----DSLKYILEE 706 Query: 680 TYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAE 739 TYGIILYQEQVM+I ++ Y+LG AD LRRA+GKK PE M K R F AEKNG+ ++ Sbjct: 707 TYGIILYQEQVMKIVSEMANYSLGEADELRRAIGKKNPELMKKNREKFVTNAEKNGVFSK 766 Query: 740 LAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVG 799 A +I+DLVEKF GYGFNKSHSAAYAL+ Y T + KA+YP EF AA++T ++ N ++ V Sbjct: 767 KANEIYDLVEKFGGYGFNKSHSAAYALIVYWTAYFKANYPLEFFAAIITTEVHNLDRFVV 826 Query: 800 LVDECWRMGLKILPPDINSGLYHFHVND---------DGEIVYGIGAIKGVGEGPIEAII 850 V+E G+ I PD+N Y F + + I +G+ A+KG+G I I Sbjct: 827 FVNEAKEKGINIFLPDVNLSDYDFEIEESFENNNEIKKMGIRFGLFAVKGIGAALINEIK 886 Query: 851 EARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAAD 910 + R + G F D R + ++ LE I+SGA D+L +R S+ L+ + Sbjct: 887 KER-ENGDFSSYEDFVYRMKQNGITKKQLESFILSGALDKLNGNRFEKYKSIDKILEYSQ 945 Query: 911 QHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYL 970 + ++E Q +F E+ + + +P++V+L+ E+E LG+Y++ HP+N+ Sbjct: 946 KKYESEEDLQMILFS--GEKKFKGKFEMEKADEFPQKVLLENEKEYLGIYVSSHPLNE-K 1002 Query: 971 KEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN-RIGICTLDDRSGRLEVM 1029 K + + ++ ++ E K + G+V + T+ G + ++D +EV+ Sbjct: 1003 KRLINIISHNKISEISQKELKK-VRIIGIVKNVKKFATRAGKEPMVKFEMEDFQKNIEVV 1061 Query: 1030 LFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLT 1089 F + + + +I+++ G V+ + + + +I+ E L I + Sbjct: 1062 CFPREYVTFGYKITEGQIMVLEGIVNSEQNKN--TVILNNICNIENLEENKNLKLYILID 1119 Query: 1090 DRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGL 1149 + + +L++ + ++ G V L ++ + + ++ + V+ S + + + L Sbjct: 1120 EEV--KEKNQKLKEIILKNK-GDNQVFLAFKTNEKKEVVKLSKKYNVNLSLKFIRKVAKL 1176 Query: 1150 IGSEQVELE 1158 G E+++L Sbjct: 1177 FGIERIKLR 1185 >UniRef50_C7XU22 DNA polymerase III n=1 Tax=Lactobacillus coleohominis 101-4-CHN RepID=C7XU22_9LACO Length = 1114 Score = 1079 bits (2792), Expect = 0.0, Method: Composition-based stats. Identities = 375/1170 (32%), Positives = 610/1170 (52%), Gaps = 72/1170 (6%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M + L V S YS++ + LVK A G A+A+TD L G V FY A A Sbjct: 1 MRKMSVTPLDVTSTYSLLQSTIRPRDLVKAAREQGYSAIALTDENVLYGAVDFYNAAQQA 60 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 GI+PI+G + L + T +TV+ N GY L L ++ + +D Sbjct: 61 GIRPIIGLKLQLTFAELDERKTTVTVIEKNQQGYTELMQLSTQQMTS----KAELTVQDV 116 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 180 + +++ I++ L + + ++++ P F+ + P E Sbjct: 117 VKQIDNCAIIIKPTMA-----ILTAHRDPTIQKLLSWFGN-QPGDIFMGINLVLDPTERQ 170 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 +L+ GL ++A V +++++ + ++ AI DG ++ P + + Q Y+ Sbjct: 171 V---LKDLSLQNGLKLIADEPVEYLEANQYFPTQVLRAIGDGRQIESPLSTAHNTGQHYL 227 Query: 241 RSEEEMCELF--ADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKRAK 297 R+ + + + A + +A+ N + ++ + + + LP+F + +T YL + Sbjct: 228 RNAQNLTVAYERAGLADAVENNEVLVQKSSFKINFQKPVLPEFAVPEGVNTAQYLRQLCI 287 Query: 298 EGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVP 357 GL++R +Y +RLE EL VI+QMGF YFLIV + + ++ + Sbjct: 288 IGLKKR-------HLAPNTTIKQYRDRLERELTVIHQMGFDDYFLIVWDIMAFAHRKQIT 340 Query: 358 VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEH 417 GPGRGS AGSLVAYAL ITD+DPLE+ LLFERFLNPER MPD D+D +R +V+E+ Sbjct: 341 TGPGRGSAAGSLVAYALAITDVDPLEYGLLFERFLNPERAQMPDIDLDIPDNRRQEVLEY 400 Query: 418 VADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRI---SKLIPPDPGMTLAKA 474 V YG + V+QIITFGT+AA+ V+RDVGRV G P V++I +++ +TLA+A Sbjct: 401 VHQRYGHERVAQIITFGTLAARQVVRDVGRVFGVPKYQVEQIIDTLRVLSRHRSVTLAEA 460 Query: 475 FEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEG 534 + L + D K +I++ARKLEG+ R+ HA GVV++ T + + PL + Sbjct: 461 IQQSQPLRNLMTDDPINKLVIEVARKLEGLPRHYSTHAAGVVLSATPLKEIVPLQPGNDE 520 Query: 535 -KHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDD 593 +TQF K VE GL+K DFLGLR L+I++ AL +I++ P DI +PL+D Sbjct: 521 AGLLMTQFPKEIVESVGLLKMDFLGLRNLSIMDRALAIIHQTT-----PGFDITKVPLND 575 Query: 594 KKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFID 653 K+ + ++ T +FQ ES G++ +++L PD FED++A+ AL+RPGP+Q + +FI Sbjct: 576 HKTIQLFKQGLTDGIFQFESTGIRQTLQQLAPDNFEDIVAVNALYRPGPMQ--NIPHFIA 633 Query: 654 RKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMG 713 RKHG+E I PD SL+P+L PTYGI++YQEQVMQ+A ++G++LG AD+LRRAM Sbjct: 634 RKHGQEPIQLPDQ-----SLQPILGPTYGILVYQEQVMQVASKMAGFSLGQADLLRRAMS 688 Query: 714 KKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLW 773 KKK M R F GA KNG N +A ++F+ +++FA YGFN+SH+ AY+ ++Y+ + Sbjct: 689 KKKQATMESMRQRFISGAVKNGYNQPIAEQVFNYIDQFANYGFNRSHAVAYSKMAYEMAY 748 Query: 774 LKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVY 833 LK H+ F A++ + + +KV + + R G++I+ P+IN + + +G+IV Sbjct: 749 LKCHFTTAFFTALLAIEPNM-DKVRLHLADAQRFGVRIIGPNINQSQMEYSL-QNGQIVM 806 Query: 834 GIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGP 893 G IKG+ I+AIIE R K G F+ L D R K ++E LI +GAFD+LG Sbjct: 807 GFSMIKGMRRDFIQAIIEER-KAGQFKNLPDFVQRLGEKWQKAALIEPLIYAGAFDQLGY 865 Query: 894 HRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGE 953 +RA ++ L + + ++ Q +P L E Sbjct: 866 NRAEMIEGLSGVFAG----------------NEFSFQSADLQPIMKRRQEYPLTYRLQKE 909 Query: 954 RETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRG-N 1012 +E LG+YL+GHP+ QY + ++ + + + G + L+ R + TK+ Sbjct: 910 QEYLGMYLSGHPVTQYQRVRQQQ----HTQRIMDLKPGSSVKLLVLLNQIRQINTKKTHQ 965 Query: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072 + T D +G +++ +F ++ L+ I+++ G V + L++ A +++ Sbjct: 966 PMAFATASDETGSMDITIFPRQYQRFVDALKPTTIVMIEGSVE--QRNERLQVIANQIIP 1023 Query: 1073 ----IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARL 1128 ++ R+ + I ++D D+LL ++ L G PV +Y A Sbjct: 1024 VERLLNNQRQVSHQRWVIRVSDNSSVDELLPKMLA-LTKSMHGNTPVVIYNVAAQQATT- 1081 Query: 1129 RFGATWRVSPSDRLLNDLRGLIGSEQVELE 1158 V D++ + L + GS V L+ Sbjct: 1082 -LPRQQWVGQQDKVRDALNKVFGSNNVVLQ 1110 >UniRef50_Q4FM70 DNA polymerase III alpha subunit n=8 Tax=Candidatus Pelagibacter RepID=Q4FM70_PELUB Length = 1138 Score = 1072 bits (2774), Expect = 0.0, Method: Composition-based stats. Identities = 422/1146 (36%), Positives = 648/1146 (56%), Gaps = 37/1146 (3%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 ++ F HL++H+ YS+ +G K L +P L I+D +NLCG ++F Sbjct: 4 LNNQNFNHLKIHTQYSICEGAIKIDNLKDFCKEKKIPCLGISDTSNLCGALEFAENISKV 63 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 G +PI+G + + D L ++A N GY+ + L S++Y + P +D Sbjct: 64 GTQPIIGTQIYFKFE---DTTGLLPLIALNENGYKRIIELSSRSYLENDALSDPHLDVKE 120 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 180 L+ EG+ LLSG G G+ +G + + F D ++LE+ R G +E + Sbjct: 121 LLIDTEGVSLLSGTIQGLFGKLFEKGRLDEISKLYRSLSSKFNDNFYLEIQRHGDQNEIA 180 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 + +E + +P++ATN+V ++ +AH+ I +++ R + + Q Y Sbjct: 181 FEKFNLEQSLKIQIPIIATNEVYYLTPDMHEAHDALTCIGSKTYVNEKNRIKYSN-QHYF 239 Query: 241 RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFP-TGDMSTEDYLVKRAKEG 299 +S EEM +LF+D+PEAL N + +CN + + LP S ++ L K + +G Sbjct: 240 KSNEEMSKLFSDLPEALENNFNLPFKCNFRPQFSKPVLPNISSEKGGSADEILKKDSLDG 299 Query: 300 LEERLAFLFPDEEERLKRRPE---YDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGV 356 L+E+ +F EE LK + Y +RL+ EL++I +M +P YFLIV ++I+W+K+N + Sbjct: 300 LKEKFQKVFKIEENNLKTDDKFLKYKDRLDHELKIIIEMKYPSYFLIVSDYIKWAKNNDI 359 Query: 357 PVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIE 416 PVGPGRGSGAGSLVA+ L ITD+DP++F+L+FERFLNP+RVSMPDFD+DFC EKRD V + Sbjct: 360 PVGPGRGSGAGSLVAWCLSITDVDPIKFNLIFERFLNPDRVSMPDFDIDFCEEKRDLVFK 419 Query: 417 HVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGM--TLAKA 474 ++ Y +D+V+ IITFG + A+ VIRDVGRVLG PYGFVD ISK+IP DP +L + Sbjct: 420 YLTTKY-KDSVAHIITFGKLKARMVIRDVGRVLGLPYGFVDSISKMIPFDPSRPQSLTEC 478 Query: 475 FEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEG 534 +EP+L ++ D VK L D++ KLEG+ RN HA GVVIA K+T+ PLY D Sbjct: 479 INSEPRLQKLVNEDPRVKKLTDLSLKLEGLNRNVATHAAGVVIADRKLTEVVPLYKDAAA 538 Query: 535 KH--PVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLD 592 P TQFD E AGL+KFDFLGL+TLT+IN ++INK+ I I D Sbjct: 539 DLLLPSTQFDMYSAENAGLIKFDFLGLKTLTVINRTQKLINKK-----VKDFKIEDIDFD 593 Query: 593 DKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFI 652 D+K F++L T +FQ+ES GM++ + +++P+ ED+IALVAL+RPGP+ + + Sbjct: 594 DQKVFELLSSGNTVGLFQVESAGMREALLQMKPNHIEDIIALVALYRPGPM--SNIPIYN 651 Query: 653 DRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAM 712 D KHGR+ Y H L+ +L+PTYG+I+YQEQVMQIAQ LSG+T G AD+LRRAM Sbjct: 652 DCKHGRQTPDY-----LHPLLEDILKPTYGVIIYQEQVMQIAQKLSGFTAGEADILRRAM 706 Query: 713 GKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTL 772 GKKK E+ KQ+ F GA KNGI+ E+A IF +E FA YGFNKSH+AAYA++SYQT Sbjct: 707 GKKKRAELEKQKQGFIAGALKNGISKEVAASIFLKIEPFAEYGFNKSHAAAYAIISYQTA 766 Query: 773 WLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIV 832 +LK +YP EF AA MT D+ N K+ +E R+ +K++ PDIN F DD Sbjct: 767 FLKTYYPKEFFAASMTMDISNQNKLGEFHEELKRINIKVIRPDINKCFADFQ-FDDNNFY 825 Query: 833 YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892 Y +G IK VG I +++ RN+ G F+ + D R + K +N+ LE L+ +GAFD + Sbjct: 826 YALGGIKSVGYEAISNVVKERNENGDFKSINDFLNRVNPKDINKLQLEGLVKAGAFDNID 885 Query: 893 PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952 +R AL NS+ + + + +A Q D+FG E+ +I + + W + L Sbjct: 886 NNRQALFNSIPNFILKTKNIYENKAANQIDLFGSDDEQDNEI---VLNIEDWKFEDRLSR 942 Query: 953 ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012 E E +G +++ HP+NQ+ EI V + + K A ++ T +GN Sbjct: 943 EFEAIGFFISDHPLNQFK-EIFDDYKIVDYAQFNLNDTIKEANIAATLLKITERKTAKGN 1001 Query: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVS-GQVSFDDFSGGLKMTAREVM 1071 G+ D + E+ +F+D L+ ++ L + LI++ + +D + ++ +++ Sbjct: 1002 SYGVIKFTDLTSVFELFIFSDILELNREALVEGSSLIITLIKTISNDENRFKRINVQKIA 1061 Query: 1072 DIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG 1131 + + + ++ + ++++ + + GT V + + + Sbjct: 1062 SLKDLFNMPVNEIVFNIKSIKD----IDKISDLV--NEEGTTEVKINITDKNNEISFKLK 1115 Query: 1132 ATWRVS 1137 + Sbjct: 1116 NKRLID 1121 >UniRef50_D2EL28 DNA polymerase III subunit alpha n=1 Tax=Pediococcus acidilactici 7_4 RepID=D2EL28_PEDAC Length = 1112 Score = 1072 bits (2772), Expect = 0.0, Method: Composition-based stats. Identities = 352/1156 (30%), Positives = 587/1156 (50%), Gaps = 54/1156 (4%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FV L V S YS++ K A LVK A G A+A+TD + G ++FY A +KPI Sbjct: 4 FVPLHVLSSYSLLTSPTKIAELVKTAKDRGYSAMALTDNNTMYGAIEFYQACLKNDLKPI 63 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 VG + D L +LA N GY NL + S +A P + + L Sbjct: 64 VGLTIWLDSTRGIDNQFALVLLAKNINGYHNLLRISSAKMTE--ISAKPTLTFNDLRAYW 121 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYE-EHFPDRYFLELIRTGRPDEESYLHA 184 + L+++ +V L RG + + Y+ FL + Sbjct: 122 KDLVVIVPPVRSEVNELLERGMANDAQALIEEYQQSIDSPDLFLGI---NGQQSHVMRQT 178 Query: 185 AVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEE 244 ++A+ G+ + V +++ D A ++ I G L P+ +++ Sbjct: 179 LTQMAQKAGIGCLPLPSVEYLNEEDHFATQVLRDIDSGKVLQHPELLAKGGGNNWLKPAT 238 Query: 245 EMCELFADIPEA--LANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKRAKEGLE 301 E + + +A L + N+ + + LPQF T + + YL + ++ L Sbjct: 239 EFVREYGQLGDAEMLTQLDRVVAGINLEIPIVSPRLPQFATPNQQDSFTYLTQLCQQALT 298 Query: 302 ERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPG 361 + L PD Y RL+ EL VI +MGF YFLI+ + +Q++ + GPG Sbjct: 299 Q-LKENVPD-------AERYQARLDHELAVIKEMGFADYFLIIHDVVQFAHQKQILTGPG 350 Query: 362 RGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADM 421 RGS AGSLVAY LKIT +DPL++ LLFERFLNPER MPD D+D ++R+ V+++V D Sbjct: 351 RGSAAGSLVAYLLKITSVDPLQYGLLFERFLNPERAQMPDIDLDIPDDQREVVLQYVHDR 410 Query: 422 YGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQL 481 YG V QIITFGT+AAK IRDV RV G +++IS LIP +TL +A + +L Sbjct: 411 YGHQHVGQIITFGTLAAKQAIRDVARVFGEMPNKINQISALIPNKLNITLKQAAQTSHRL 470 Query: 482 PEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQF 541 + E+ + + + + A +LEG+ R+ HA G+V++ ++ + P+ D ++Q+ Sbjct: 471 RDFIESSPKNRFMFETACRLEGLPRHFSTHAAGIVLSQDELVESVPVQ-DGNEGMLMSQY 529 Query: 542 DKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQ 601 K+ VE GL+K DFLGLR L+++N LE++++ EP +I I L+D ++ + Q Sbjct: 530 SKNFVEQVGLLKMDFLGLRNLSLMNNILELVHRT-----EPQFEIEKIELNDPQTLQLFQ 584 Query: 602 RSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEI 661 +T+ VFQ ES G++++++++ P F ++A+ AL+RPGP++ +D F+ RK E Sbjct: 585 WGDTSGVFQFESTGIRNVLRKVHPTNFGLVVAVNALYRPGPME--NIDRFVKRKDHLEPY 642 Query: 662 SYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMA 721 +P+ L+ VL TYGI++YQEQVM++A + G +LG AD+LRRAM KKK + Sbjct: 643 RFPNQ-----ILERVLGETYGILVYQEQVMEVASAMGGLSLGQADLLRRAMSKKKHAVIE 697 Query: 722 KQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAE 781 + R+ F +GA + G + ++A +++ +E FA YGFNKSH+ AY+ +++Q +LKAHYP + Sbjct: 698 QMRTNFIQGAVQKGYSEKIAQQVYRYIENFANYGFNKSHAVAYSKLAFQLAYLKAHYPGD 757 Query: 782 FMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGV 841 F A++ + + N K + E R+G+ L PDIN + +G+I G AIKG+ Sbjct: 758 FYTALLNSVVGNDTKTKTYIQELKRLGIPTLAPDINQSSATYT-YQNGQIRMGFTAIKGL 816 Query: 842 GEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNS 901 I+ ++ R +GG F+ + D R + ++ V++KLI +GA D G +RA L Sbjct: 817 RRDFIQHLLAERERGGQFKTVDDWLRRMGNQGIDEDVIDKLIFAGALDSFGYNRAELDEY 876 Query: 902 LGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYL 961 L + LK G + +++ + S P LD E E LG Y+ Sbjct: 877 LPELLKGI------------TFSGQNVDLFQKLMPTIKSRPDLPLDEKLDREEELLGTYV 924 Query: 962 TGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDD 1021 + HP+ ++ + I++ R + + G+ +T+ + + R + TK+G + + D Sbjct: 925 SAHPVERFAELIKQR----RFVQIQQFKAGEKVTSIVYIRSIRSIRTKKGEPMAFAKISD 980 Query: 1022 RSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYA 1081 ++ E ++F QLLE R+L ++G+V + L++ ++ + Sbjct: 981 QTDECEAVIFPRVYQA-TQLLESKRVLQLTGKVEQRE--DQLQLIVDQIEAPRQIAHGQT 1037 Query: 1082 RGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDR 1141 L I + R+ RL + + G +PV L Y+ + + + + + Sbjct: 1038 HWL-IKVPSRKNPADFQKRLFGMFKEYH-GKVPVTLVYRDTNQQR--ALSEKFSLQGTPE 1093 Query: 1142 LLNDLRGLIGSEQVEL 1157 + L+G++Q+ L Sbjct: 1094 VKKAFENLLGTDQISL 1109 >UniRef50_Q1RKF9 DNA polymerase III subunit alpha n=21 Tax=Rickettsia RepID=DPO3A_RICBR Length = 1172 Score = 1069 bits (2765), Expect = 0.0, Method: Composition-based stats. Identities = 420/1180 (35%), Positives = 630/1180 (53%), Gaps = 67/1180 (5%) Query: 3 EPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGI 62 + F+HLR S YS + T +V+ A++ M A+ +TD NL G ++F G+ Sbjct: 2 QTEFIHLRTQSSYSFLASALTTEKIVELASSYKMAAICLTDKENLFGSLEFALYAIKKGL 61 Query: 63 KPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLI 122 +PI G N+Q + + ++A + TGY+NL L S + I + L Sbjct: 62 QPIHGVILNIQYETGV--FAEILLIAKDETGYKNLLKLSSITFTTNDRKICNHITFEDLK 119 Query: 123 ELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYL 182 E EGLI L G +G+ LL + +E F DR++ E++R P+E+ Sbjct: 120 EHQEGLITLCCYTEGVIGKCLLANKEEQAEMFARNLQEIFGDRFYFEIMRHDLPEEQLIE 179 Query: 183 HAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRS 242 +++A +P+VATN V F S DAH++ + I G T + P R + S Y +S Sbjct: 180 DNYIKIASKLNIPLVATNKVLFSKKSMHDAHDVLLCISAGVTKEYPDR-KTVSENCYFKS 238 Query: 243 EEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKEGLEE 302 +EM ELFAD+P A+ NTV + +RC LP F T D+S D + K AK+GL Sbjct: 239 AKEMIELFADLPSAIENTVNLTQRCYFAAHTNPPMLPNFATKDISETDLIRKEAKDGLLA 298 Query: 303 RLAFLFPDE----EERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPV 358 RL F E E + + EY RL+ EL +I M F GYFLIV +FI+WSK G+ V Sbjct: 299 RLDTKFKSEHISIEHQESIKTEYFARLDYELNIICSMNFAGYFLIVSDFIKWSKKQGILV 358 Query: 359 GPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHV 418 GPGRGSGAGS+VA++L ITDLDP++F LLFERFLNP+R+SMPDFD+DFC E+R++VI +V Sbjct: 359 GPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPDRISMPDFDIDFCQERREEVINYV 418 Query: 419 ADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP--GMTLAKAFE 476 YG + V QIITFG M AKAVI+DV RVL PY F D +++L+P +TL +A Sbjct: 419 RSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVPFSAINPVTLEQAIR 478 Query: 477 AEPQLPEIYEAD---------EEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAP 527 P+L + + E +K ++D + LEG+ R++ HA G+VIA T + D P Sbjct: 479 EVPELANAAKGNGLYNLEGELELIKLVLDTSLILEGLHRHSSTHAAGIVIAGTDLVDIVP 538 Query: 528 LYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIA 587 +Y D V + E AGL+KFDFLGL+TLT+I +++ ++ +D Sbjct: 539 VYKDANSDMLVVGYSMKYCELAGLIKFDFLGLQTLTVITDCKKLLKEQ-----NIEIDFN 593 Query: 588 AIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGM 647 + DD+K++ ML + + VFQ ES GMKD ++RL+PD D+IAL AL+RPGP++ Sbjct: 594 DMTFDDEKTYQMLCKGKGVGVFQFESVGMKDALRRLKPDSIHDLIALGALYRPGPME--N 651 Query: 648 VDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADM 707 + +I KH ++ Y HE LKP+LE TYG+++YQEQV +IAQVL+GYTLG AD+ Sbjct: 652 IPTYIACKHKLQQPDY-----LHELLKPILEETYGVVIYQEQVQRIAQVLAGYTLGAADL 706 Query: 708 LRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALV 767 LRRAMGKK EM +Q +F +GA N I+ A IF V KFAGYGFNK+H+AAY ++ Sbjct: 707 LRRAMGKKIKAEMEQQEEIFVKGAIANNISEAQAKSIFATVAKFAGYGFNKAHAAAYGVI 766 Query: 768 SYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVND 827 SYQT +LKA+YPAEF+ A + +++N +K+ + E +KI+ P+IN +F V Sbjct: 767 SYQTAYLKANYPAEFVVACLNLELNNHDKINLFLQEAKDNNIKIIAPNINISGGYFSVKS 826 Query: 828 -------------------------DGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFREL 862 D I++ +GAIKGV + + + RN G F+ + Sbjct: 827 VIPRLDCGIHGDQLKDTAVKPQYDIDSSIIFALGAIKGVTPNFGKLVTDERNARGAFKSI 886 Query: 863 FDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQAD 922 D R K +N ++LE LI +G FD L +R L S+ L + + + +A Q Sbjct: 887 VDFIERLPPKAINSKLLENLIKAGCFDELHDNRLQLFLSISKLLAYSVSYHEEQASNQFS 946 Query: 923 MFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRL 982 + V + E S + + E E +GL+++ HP+ +Y + R Sbjct: 947 LIKVSSLSKEI----LVSSDYADKNTLAFYEFEAMGLFISNHPLTEYKEIFNRLNILSSA 1002 Query: 983 KDMHPTERGK-VITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFT-DALDKYQQ 1040 + G + AG++ ++ RG R L D E+ +F+ + L Y Sbjct: 1003 DLHNNLPDGTNRVMIAGVIQKKDSRMSARG-RFVTLVLSDPENIFELSIFSEEVLKDYVH 1061 Query: 1041 LLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNR 1100 LL+ +++V+ + D+ GG+K+TA+ I+ A L + + + +Q++ Sbjct: 1062 LLDVKSLVVVNCDIIKDE--GGIKITAKSFSSIENATGNQQFDLQLYPKNDEELEQIITL 1119 Query: 1101 LRQSLEPHRSGTIPVHLYYQRADAR---ARLRFGATWRVS 1137 L + +Y + A++ F + + Sbjct: 1120 LSARINNDEQSNTIATIYLSNKSVKNFVAKITFPEKFFLK 1159 >UniRef50_D0JAY7 DNA polymerase III subunit alpha n=2 Tax=Blattabacterium RepID=D0JAY7_BLASB Length = 1434 Score = 1061 bits (2743), Expect = 0.0, Method: Composition-based stats. Identities = 369/1209 (30%), Positives = 618/1209 (51%), Gaps = 96/1209 (7%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG---- 61 + H+ H+ +S++ LV +A MPA+ ITD+ NL G F A H Sbjct: 253 YSHIHNHTYFSILYSTVDIRSLVDRAIHFNMPAVGITDYGNLMGSFHFLNAIHSINKKNY 312 Query: 62 ----IKPIVGADFNVQCD--------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109 IK IVG + + + D+ L+ N GY NL L S + G+ Sbjct: 313 PKKLIKGIVGCEVFLSDNYLQKKFTKDEPDKRYQQVFLSKNKKGYHNLAKLCSLGFTEGF 372 Query: 110 GAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLE 169 A P I + + + E LI L+G ++ ++L ++ +++E F D +++E Sbjct: 373 YAGIPRIGKKLIEKYKENLIALTGDLNAEIPYTILNYGERKAEKVFLWWKELFGDDFYIE 432 Query: 170 LIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP- 228 L+R G +E ++ ++ + + N+ ++D ++ +AH+I + + +G P Sbjct: 433 LLRHGLEEENHVNDILLKFSKKYHVKYIVQNNTFYLDKNEANAHDILLCVKNGEKQSTPI 492 Query: 229 -----KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT 283 R + + Y ++ EEM ++F+D+PE+ E+ + + LP+F Sbjct: 493 GKGKGYRFGFPNHEFYFKNSEEMKKIFSDLPESFDFLEELVNKIESYHLSRKILLPKFQI 552 Query: 284 G-------------DMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQ 330 + +L + EG +ER + E ER+ EL+ Sbjct: 553 PRSFEDPMDKIDGGNRGENRFLKRITYEGAKERYKNM----------TKEIQERILFELK 602 Query: 331 VINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFER 390 I ++G+PGYFLIV FIQ ++ + +GPGRGS AGS+VAY + IT++DP+++ LLFER Sbjct: 603 TIERIGYPGYFLIVHNFIQQARKMNISIGPGRGSVAGSVVAYCIGITNIDPIKYHLLFER 662 Query: 391 FLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLG 450 FLNP R+S+PD D+DF RD++IE V YG++ V+QIIT+ TM AK+ IRD GRVL Sbjct: 663 FLNPNRISLPDIDIDFDDRGRDKIIEWVVQKYGKNQVAQIITYATMGAKSSIRDTGRVLD 722 Query: 451 HPYGFVDRISKLIPP--------DPGMTLAKAFEAE----PQLPEI-YEADEEVKALIDM 497 DR++K+IP ++ K + + +L +I D ++ Sbjct: 723 LSLKETDRLAKMIPNMLSLKTILSENCSIEKIRKEDTNNIQKLRKIAINKDSLEGKVLQQ 782 Query: 498 ARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFL 557 A+ LEG R+ G HA G++I+P I ++ P+ +E +TQFD VE+AGL+K DFL Sbjct: 783 AKILEGTIRSTGIHACGIIISPYNIKEYIPVSVSKESDLLLTQFDNHVVEHAGLLKMDFL 842 Query: 558 GLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMK 617 GL+TLTII A+ +I K+R N E PL+D+K++ + Q+ ET AVFQ ES GM+ Sbjct: 843 GLKTLTIIKDAVNLIKKKRKNNTELSF-----PLEDEKTYCLFQKGETIAVFQYESPGMQ 897 Query: 618 DLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVL 677 +++L+PD F+D+IA+ AL+RPGPLQ + NFI RKHG+E I+Y ++ L Sbjct: 898 KYLRQLKPDKFDDLIAMTALYRPGPLQ--YIPNFISRKHGKEAITYDL-----PEMEEFL 950 Query: 678 EPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGIN 737 + TYGI +YQEQVM IAQ ++ ++ G AD+LR AMGKK+ E + R+ F + A K G + Sbjct: 951 KETYGITIYQEQVMLIAQKIADFSKGDADLLRIAMGKKQKEVLNTMRNQFIDSAMKKGYS 1010 Query: 738 AELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKV 797 + KI+ E F+ Y FNKSH+ YA +++QT +LKAH+P E+MA+V++ +M N ++ Sbjct: 1011 KNILEKIWKDWEYFSCYAFNKSHATCYAYIAFQTAYLKAHFPYEYMASVLSNNMHNIRQL 1070 Query: 798 VGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGG 857 ++EC +M + ++ PDIN F V D I +G+ IKGVGE ++ I++ R K G Sbjct: 1071 TFFIEECRKMNISVIHPDINESDSFFEVTDSNRIRFGLTGIKGVGENAVKIILQEREKNG 1130 Query: 858 YFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAAL--------MNSLGDALKAA 909 + + DL R D + +N++ LE LI+SG+ D HR +N+L ++ Sbjct: 1131 PYTSILDLVKRIDLRIVNKKTLESLILSGSLDCFHIHREQYFHIENDEKLNTLEKIIRFG 1190 Query: 910 DQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQY 969 + KA+ + E + + C W L E+E LG+Y + HP++ Y Sbjct: 1191 SKFQKAKNK---------STEMKMDQPVIMGCDLWSNVYKLSKEKEVLGVYASAHPLDDY 1241 Query: 970 LKEIERYVGG-----VRLKDMHPTERGKVITAAGLVVAARVMV-TKRGNRIGICTLDDRS 1023 E++ ++ + GK I G++ + G + G+ L+D + Sbjct: 1242 YYEMKYFMNTSLSNLSLISKKESMFVGKKIHTCGILSKIEKKTYIRSGIKYGLFLLEDYN 1301 Query: 1024 GRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARG 1083 E ++ KY+ +L + +L + + K+ + ++ EK + Sbjct: 1302 SSKEFRIYGQKYLKYEPILLINNLLYLCISIEK-FKDQEYKINILHIENLQNVLEKLVQK 1360 Query: 1084 LAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRF-GATWRVSPSDRL 1142 L + + +++ +++ + ++L + G +++ + R L F + ++ + Sbjct: 1361 LIVKININDLNNTMISNI-ETLFSQQKGNKKLNIVLYDKENRIFLNFESRKYGININSSF 1419 Query: 1143 LNDLRGLIG 1151 L L + G Sbjct: 1420 LKKLEKING 1428 >UniRef50_C9B7L3 DNA polymerase III alpha subunit n=18 Tax=Enterococcus RepID=C9B7L3_ENTFC Length = 1104 Score = 1057 bits (2735), Expect = 0.0, Method: Composition-based stats. Identities = 359/1159 (30%), Positives = 591/1159 (50%), Gaps = 63/1159 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F L + YS++ + V++A G +LAITD L G +FY G++PI Sbjct: 3 FPQLYTITSYSLLQSTIRIREYVQEAKKQGYTSLAITDKDVLYGAPEFYRICVEEGVQPI 62 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 +G + + ++ L A + GYQ L L S+ + + + D L Sbjct: 63 IGLHLSYTYE---EKNYGLLAYAKDEIGYQQLMKLSSRKMIQEKLDLAEMTETDHLA--- 116 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 185 ++ + + + E F +++ L PD+ L Sbjct: 117 --FVVPANHSVSEAF----NKEDNFFGHWQFLLENVFTRNFYIGLTEN-TPDQ---LPEW 166 Query: 186 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGF--TLDDPKRPRNYSPQQYMRSE 243 + + A + + + + A E+ I DG L++ + Y+ SE Sbjct: 167 YQYVIKENYSLCALHPIASLQQEELFALEVMKHIKDGSQIPLENLSASLPLTANGYLLSE 226 Query: 244 EEMCELF--ADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMS-TEDYLVKRAKEGL 300 +EM + F A + +A+ +A+ + + + LP +P + +YL + + Sbjct: 227 QEMIKRFEKAGLSQAVIGAQRLAESISFEFQFHQKLLPHYPVPNGKQAGEYLRELCYSQV 286 Query: 301 EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360 E R+ EY ERL+ EL VI+QMGF YFLIV + + ++ N + G Sbjct: 287 ERRI----------TDYTKEYQERLDYELSVIHQMGFDDYFLIVWDVMAFAHRNKIVTGA 336 Query: 361 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420 GRGS AGSLVAY L+ITD+DPLE+DLLFERFLNPER +MPD D+D +R++V+ +V + Sbjct: 337 GRGSAAGSLVAYVLEITDVDPLEYDLLFERFLNPERFTMPDIDLDIPDNRREEVLNYVRE 396 Query: 421 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQ 480 YG+ ++QI TFGTMAAK V+RD RV G +R SK IP +TL +A++ Q Sbjct: 397 KYGQYHMAQIATFGTMAAKMVLRDAARVFGLSQSEANRWSKAIPNQLKITLTQAYKTSHQ 456 Query: 481 LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQ 540 L E+ +A E+ + L A LEG+ R+ HA GVVI+ + + PL + TQ Sbjct: 457 LVELVQASEKNQLLFKTAVILEGLPRHVSTHAAGVVISDKNLLELVPLQRGSDEAFL-TQ 515 Query: 541 FDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDML 600 + ++VE GL+K DFLGLR L+II++ L+ + + + + +PL+D K+ + Sbjct: 516 YTMNEVEAIGLLKMDFLGLRNLSIIDFTLKAVKRVEGYE----IRLKEMPLNDAKTLLLF 571 Query: 601 QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE 660 QR ET+ VFQ ES G++++++RL P+ ED+ A+ AL+RPGP+Q +D FI RK G+E Sbjct: 572 QRGETSGVFQFESAGIRNVLRRLGPENIEDIAAVNALYRPGPMQ--NIDTFIARKKGKEA 629 Query: 661 ISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM 720 I YPD +SL P+L+ TYG+I+YQEQ+MQIA ++G+TLG +D+LRRA+ KKK + + Sbjct: 630 IRYPD-----DSLIPILKNTYGVIVYQEQIMQIASTMAGFTLGQSDILRRAVSKKKKDVL 684 Query: 721 AKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA 780 +++S F GA + G + + A +++ +EKFA YGFN+SH+ AY+ V +Q +LKAH+P Sbjct: 685 DEEKSHFVSGALQQGYSEKTAATVYEYIEKFANYGFNRSHAFAYSFVGFQMAYLKAHHPG 744 Query: 781 EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG 840 F ++M + NT K+ + E + LK+ P IN F + + EI +G+ AIKG Sbjct: 745 AFFTSLMNSVRHNTSKLKEYIAEARKNKLKLSSPSINQSNSSFELVNKEEIRFGLTAIKG 804 Query: 841 VGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMN 900 + +E I+ R + G F+ + R D + L +L+ L G FD L P+R LM Sbjct: 805 IRRDFVEDILNERKQNGPFQSVDQFLIRIDKRWLKLELLQSLTAVGVFDELSPNRKQLML 864 Query: 901 SLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLY 960 L ++ + G D+ G++A + E + + L E E LG+Y Sbjct: 865 DLEGKIQNI-----VYSGGSLDLLGIMALKEE-------EVADYTLEERLKLEEEYLGIY 912 Query: 961 LTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLD 1020 L+GHP + +R +++ + + + ++ R + TK+G + Sbjct: 913 LSGHPAEGF----DRLRLAKQVQLITDIVPNQPVNLLVMIKEVREIRTKKGELMAFVEGT 968 Query: 1021 DRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKY 1080 D SG + V +F KY+ L DR++ V G+ ++ L++ D ++ +Y Sbjct: 969 DSSGEISVTVFPTLYRKYRNLFAVDRVIFVQGRSEISKYNQELQLIGESFADPNQLEAQY 1028 Query: 1081 A-RGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPS 1139 + + +T+ + D +++ +L+ + H G IPV +Y+++ + + V S Sbjct: 1029 PSQTCYLRITEEREDPEIMKQLQVIFQKH-PGYIPVVMYHEKTQRKVV--LSDAYWVDDS 1085 Query: 1140 DRLLNDLRGLIGSEQVELE 1158 + L L+G + V + Sbjct: 1086 KSIKGQLIYLLGEDNVVFK 1104 >UniRef50_C2D6U4 Possible DNA-directed DNA polymerase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D6U4_9ACTN Length = 1302 Score = 1057 bits (2735), Expect = 0.0, Method: Composition-based stats. Identities = 380/1186 (32%), Positives = 580/1186 (48%), Gaps = 109/1186 (9%) Query: 62 IKPIVGADFNVQCDLLGDEL-----THLTVLAANNTGYQNLTLLISKAYQRGYGAAGPII 116 IKPI G + N+ D ++ HLT+L N GY NL ++S A + P Sbjct: 125 IKPIFGCEANLIPDQCIEKGTPQKRYHLTLLVKNAVGYVNLMKMMSLAANQMM-YYKPRT 183 Query: 117 DRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRP 176 L + +EGLI LSG G + + ++ ++ F D ++LE+ G Sbjct: 184 TFAMLEKYHEGLICLSGCAHGVIAQMIVTQQYDAARAWAQKFKALFGDDFYLEIQDHGVS 243 Query: 177 -------DEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPK 229 E+ V+L + G+ VVATND + D + +I I LD+ Sbjct: 244 LDSWNGMSEQMIAQRIVQLGKEEGIAVVATNDNHYFHQDDVETRDILSCIGANTHLDENY 303 Query: 230 RPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT--GDMS 287 + + Y +SEE+M LFA +PEA+ +V IA +C+ + +LP+FP + Sbjct: 304 QSTLPGSEFYFKSEEQMRALFAWVPEAVDESVRIAAKCSFELDWTHMYLPKFPGLREGET 363 Query: 288 TEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347 +E+ ++GL + + D ER E E VI GF YFLIV E+ Sbjct: 364 SEERFRSECEQGLARKYGKQWQDVTINGVN---VKERFEYEYGVICFKGFADYFLIVQEY 420 Query: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 ++W+K++G+ VGPGRGS AG++VAYA+ IT DPLE L+FERFL+ ER MPD D+DF Sbjct: 421 VRWAKEHGIGVGPGRGSAAGAIVAYAMDITAFDPLENGLMFERFLSLERTEMPDIDMDFD 480 Query: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467 E+R +V++HV ++YG D V +IT+ T+ AK I D RVLG+P ++SK++ DP Sbjct: 481 DERRLEVVQHVRELYGSDRVCHVITYSTIKAKQAINDAARVLGYPVATAQKLSKMVSSDP 540 Query: 468 GMTLAKAFEA--------EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAP 519 L P + Y + + +ID AR +EG+ R G HA ++IAP Sbjct: 541 KTKLKFVLSKTEGKEDMYNPDFVDAYHNNGDEHRIIDAARSIEGIIRGEGVHACAILIAP 600 Query: 520 TKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKN 579 T + D P D +G +TQ++ V GL+K DFLGLRTLT+I+ AL+ I Sbjct: 601 TPVNDHVPTKLDTKGGVEITQYEGHSVADMGLLKMDFLGLRTLTVISKALDNIRASYPDL 660 Query: 580 GE------------------PPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIK 621 + +D IP D + F ++ T VFQ+ES GM IK Sbjct: 661 SKLDSLGDGVKACLKPGATCIDIDPQKIPFTDPRIFQLVGSGRTAGVFQIESEGMTATIK 720 Query: 622 RLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTY 681 ++P F ++AL+AL+RPGPL +GMV ++I+R +GRE + + D + L +L+ TY Sbjct: 721 NMKPKEFRQIVALIALYRPGPLGAGMVTSYINRMNGREPVVFYD-----DRLSDILDETY 775 Query: 682 GIILYQEQVMQIAQVLSGYTLGGAD-MLRRAMGKKKPEEM------------AKQRSVFA 728 G I+YQEQVMQI+ +SG++ G +D +R+ + KKK + + Sbjct: 776 GTIVYQEQVMQISVKMSGFSKGESDSKIRKPVAKKKIALLTSTIFHWENGRDETTYDHWM 835 Query: 729 EGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMT 788 GA NG E+A +I+D V +FA Y FNKSHSA YA++ QT WLKA++P E+MA+V+T Sbjct: 836 NGASANGYKKEVAQRIWDDVLEFASYAFNKSHSAGYAILVMQTAWLKAYFPREYMASVLT 895 Query: 789 ADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEA 848 + M T K+V + C G+KILPPDIN F G I +G I+GVGE A Sbjct: 896 SYMGKTNKIVHYISACNHEGIKILPPDINESGRDFTATPQG-IRFGFAGIRGVGENVGIA 954 Query: 849 IIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLG----- 903 I++ R K G F L D R ++ + NRRV+E LI +GAFD G R LM + Sbjct: 955 IMQERKKNGPFANLHDFVKRVNSAQANRRVVEALIKAGAFDSCGYPRKQLMGFIDKNNPK 1014 Query: 904 DALKAADQHAKAEAIGQADMFGVLAE-EPEQIEQSYASCQP---WPEQVVLDGERETLGL 959 + + A +H K ++GQ +F E E+ P W + +L ERE LG+ Sbjct: 1015 NIIDEAARHEKDRSMGQLSLFDYFGTVEGSGFEEKIPPADPHDRWEDGFMLSQEREVLGI 1074 Query: 960 YLTGHPINQYLKEIERYVGGVRLKDMHP-----------------TERGKVITAAGLVVA 1002 Y+T HP+ Y + R L ++ GK I AG+ Sbjct: 1075 YVTDHPLRPYQVALRRSRDF-TLSELEESKEVIDEQSGATHLEYKVPEGKTIHLAGMTAT 1133 Query: 1003 --ARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLE-----------KDRILI 1049 + +TK G ++ I TL+D G++ +++F + LL+ ++ + Sbjct: 1134 GLIQRRLTKTGKQMAIVTLEDMEGQIPLVVFPKVFEASSALLKGEVLESLDSSGENIFIK 1193 Query: 1050 VSGQVSFDDFSGGLKMTAREVMDIDEA-REKYARGLAISLTDRQIDDQLLNRLRQSLEPH 1108 V+G++ + ++ + + + + I L+ ++ LR L + Sbjct: 1194 VTGKLERGERGN--QVIVETLAPLQLSGAINSIHVIEIGLSTSKLSTPYFEMLRSVLVRY 1251 Query: 1109 RSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLN-DLRGLIGSE 1153 G V L Y+ + A + V D LL ++ + GS+ Sbjct: 1252 -PGLDRVELLYESS-AHDIMHMELPLTVDACDPLLKAEIEDMFGSD 1295 Score = 77.6 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 27/56 (48%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61 FVHL HS +S++D +V A A M ALA+TD + G+ F A Sbjct: 3 FVHLHNHSFFSVLDASTSIQNMVDAAVAQHMHALALTDHAYMFGIPDFDLACRKYN 58 >UniRef50_A8RC96 Putative uncharacterized protein n=2 Tax=Erysipelotrichaceae RepID=A8RC96_9FIRM Length = 1027 Score = 1045 bits (2703), Expect = 0.0, Method: Composition-based stats. Identities = 340/1070 (31%), Positives = 582/1070 (54%), Gaps = 49/1070 (4%) Query: 7 VHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIV 66 VHL V S Y+++ ++ G ++A+TD + G + FY A IKPI Sbjct: 3 VHLHVRSAYTLLQSTLTIPKIIACTKQHGYQSVALTDKNVMHGAMAFYHACIKENIKPIF 62 Query: 67 GADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNE 126 G + ++ +LA N+ GY +L L + + + + L + Sbjct: 63 GMEV---EAAYDNDSLGFILLAKNDQGYVDLMKLSTLLNTGEHAK---QVSFEELCLYTK 116 Query: 127 GLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAV 186 ++L+ G + L++ L+ + + + F D +++ + R +S Sbjct: 117 DCVVLTNGDQNIMETYLVKEEIGLLSKLLQLCTQSFTD-FYVSIARNDSGLLKSKNPRLK 175 Query: 187 ELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEM 246 L + + VA + + F D ++ ++++ AIH ++DD R N+SP++Y RS+ EM Sbjct: 176 SLCKEMKIRTVALSRIYFQDEAEEESYKTLCAIHQQVSVDD--RMLNFSPKRYYRSQAEM 233 Query: 247 CELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKRAKEGLEERLA 305 +L+ E L + EIA +CNV ++ + LP+F S+E++L +GL +R+ Sbjct: 234 AQLYD--EEDLLASEEIAAKCNVKMQFPQAILPKFKNKYGVSSEEFLRNLCHKGLAKRM- 290 Query: 306 FLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSG 365 Y +RLE EL VI M + YFLIV +FI+++K + +GPGRGS Sbjct: 291 -------HFQAIPKVYQQRLEYELDVIINMHYADYFLIVWDFIRFAKSQNIYIGPGRGSA 343 Query: 366 AGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRD 425 AGSLV+Y L IT +DPL+++LLFERFLNPERVSMPD D DF +RD+VIE+V +YG Sbjct: 344 AGSLVSYCLGITHVDPLQYNLLFERFLNPERVSMPDIDTDFPDNRRDEVIEYVKGLYGSH 403 Query: 426 AVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIY 485 S IITF T+AAK V+RDVGR + +D + K++P P +TL +E + + Sbjct: 404 RASHIITFNTLAAKQVLRDVGRAMNISLREIDSLCKMVPSMPKVTLDYTYENSARFKQKI 463 Query: 486 EADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSD 545 + + + L ++++LEG+ R+A HA G+V++ I+ PL D + TQF Sbjct: 464 NSSQLYRKLFAISKQLEGLPRHASLHAAGIVLSNDAISSVCPLI-DVDAGISATQFTMDY 522 Query: 546 VEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSET 605 +E GL+K DFLGLR LTII+ + +IN+ E LDI IPL+DKK+F ++Q +T Sbjct: 523 MEELGLIKMDFLGLRNLTIIDEVVNLINRDH----ENKLDIMHIPLNDKKTFALIQAVDT 578 Query: 606 TAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPD 665 VFQLES GMK+L+++++P CFED++A VALFRPGP++ + +++R+ +++ Y Sbjct: 579 VGVFQLESEGMKNLLRKMKPTCFEDIVATVALFRPGPME--NIPEYLERRANPQKVDY-- 634 Query: 666 VQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRS 725 H LKP+LE TYGI++YQEQ+MQ+AQV++G++LG AD LR+A+ KKK EE+A+ ++ Sbjct: 635 ---IHPLLKPILENTYGIMIYQEQIMQVAQVMAGFSLGKADNLRKAISKKKGEELARLKN 691 Query: 726 VFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAA 785 F +GA++ G +LA+ +++L+ KFA YGFN+SHS AY +++YQ +LKA+ P F + Sbjct: 692 DFIQGAKQKGFEEQLAIHVYELIMKFANYGFNRSHSVAYGMIAYQMAYLKANAPLYFFVS 751 Query: 786 VMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGP 845 ++ + + + K + E + G+ IL P +N + + + + + IKG+G Sbjct: 752 LLNSMIGSESKTSEYIFEAKKRGISILLPSVNFSGNGYRIEKR-SLRFPLNGIKGIGNAV 810 Query: 846 IEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDA 905 I++ RN G FR+ FD AR + ++ +E LI +GA D +R++++ +L DA Sbjct: 811 CSQILKERNSHGKFRDYFDFVARMSAIHIGKKTMEILIYAGALDEFNINRSSMIATLEDA 870 Query: 906 LKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHP 965 L+ + +A F +++ + + S + ++++ E+E LG YL+ HP Sbjct: 871 LRYGELVKIEDADQILFAFELVS------KPAIISVKE-HRSMLVEKEKECLGFYLSSHP 923 Query: 966 INQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGR 1025 I K + + + + + + ++ + TK G + D + + Sbjct: 924 IELLRKRMNAQLAPL----IALKAQRGYVRFLCMIERVKQHRTKNGALMAFAVSADETSK 979 Query: 1026 LEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDE 1075 ++++ + + Y + L + + + G + ++ +++ I++ Sbjct: 980 IDLVCMPNIYEIYHEKLVRGKYFYIEGVIDKENSC-----LVKKMTPIED 1024 >UniRef50_Q2GEN2 DNA polymerase III, alpha subunit n=2 Tax=Neorickettsia RepID=Q2GEN2_NEOSM Length = 1077 Score = 1044 bits (2700), Expect = 0.0, Method: Composition-based stats. Identities = 422/1153 (36%), Positives = 623/1153 (54%), Gaps = 91/1153 (7%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M FVHLRV SDYS++ + K +V A A GMPA+A+TD + G ++F + Sbjct: 1 MRRQTFVHLRVRSDYSLLRAVTKPRRIVDLARAAGMPAVALTDIDTMAGALEFAEYAKAS 60 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 GI+PI+G D ++ + + + ++A N GY N+ L R + + Sbjct: 61 GIQPIIGIDLSISHNRVDSR---VLLIAKNEEGYHNMIKLSGIVSLR-------RVALNE 110 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 180 + ++GLILL G+ + S + V+ ++ F F+E+ R G +S Sbjct: 111 VFTHSKGLILLL----GEFFIDAINSYSIDAETLVSDLKQVFGKDLFVEIQRLGN---QS 163 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 ++L +P VATNDV F D+ +AH++ I ++D R +YSP+ Y Sbjct: 164 AEEKLIQLGYEHNIPFVATNDVLFPDTDFREAHDVLTCIGSLTYVNDINRV-HYSPESYF 222 Query: 241 RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKEGL 300 +S EEM LFAD+ EAL NTV IA+RC+ + LP+F +++ L + + GL Sbjct: 223 KSAEEMIALFADLKEALHNTVLIARRCSFMPEVRSPILPKFECEMDESDE-LRRLSYIGL 281 Query: 301 EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360 R+ P Y +RLE EL +I M + GYFLIV +FI+WSK NG+ VGP Sbjct: 282 HRRMGADVPQN---------YLDRLEYELGIIIDMNYAGYFLIVADFIRWSKANGIVVGP 332 Query: 361 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420 GRGSG GS+VA+ L IT LDPL+F L FERFLNP RVSMPDFDVDFC EKR VIE+V Sbjct: 333 GRGSGVGSIVAWCLGITGLDPLKFALFFERFLNPVRVSMPDFDVDFCQEKRHLVIEYVRK 392 Query: 421 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478 YG V+QI+TFGT+ +A +RDVGRVL PYG VDRI K+IP +P ++L +A + Sbjct: 393 KYG--HVAQIMTFGTLQPRAALRDVGRVLQLPYGRVDRICKMIPNNPANPISLQEAINLD 450 Query: 479 PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538 L E DE + L+D+A KLEG R+ HA G+VI+ T I D+ P+Y D+E PV Sbjct: 451 KDLQRESEDDESIAKLLDLALKLEGTLRHTSTHAAGIVISDTPIEDYLPVYHDKESDIPV 510 Query: 539 TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598 TQ+ VE AGL+KFDFLGL+TLT+IN A ++ + P DI +IPLDDK+++D Sbjct: 511 TQYSMKYVEKAGLIKFDFLGLKTLTVINQACLLVRLK-----NPNFDIDSIPLDDKRTYD 565 Query: 599 MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658 +L VFQL++ M + +KRL PDCFED+IAL++L RPGP+ + +I RKHG+ Sbjct: 566 LLSAGNAIGVFQLDNAYMCETLKRLHPDCFEDIIALISLNRPGPMA--NIPTYIARKHGK 623 Query: 659 EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718 E + YP H L+ L+ T+G+++YQEQVM++ ++L+GYTL AD+LRR MGKK Sbjct: 624 EAVKYP-----HPLLESSLKETFGVVIYQEQVMEMVRLLAGYTLAEADILRRVMGKKIRA 678 Query: 719 EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778 EM++Q F EGA++NGI E A +IF+++EKFAGYGFNKSH+AAYAL+SYQT +LKA++ Sbjct: 679 EMSEQAEKFVEGAKRNGIETERAQEIFEMIEKFAGYGFNKSHAAAYALISYQTAFLKANF 738 Query: 779 PAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAI 838 P EF A + ++ +T+K+ L+ + G+ ILPPDIN F + D I Y + A+ Sbjct: 739 PIEFTTAALNLELHHTDKLAILIQDAKNYGITILPPDINKSKILFSIE-DNAIRYSLAAL 797 Query: 839 KGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAAL 898 K VGE AI + F + +L D K ++R+ +E LI SGA D L P R+ L Sbjct: 798 KNVGEAAASAI----QRRSPFATIPELQRCLDGKIVHRKAVESLIKSGATDVLSPDRSGL 853 Query: 899 MNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLG 958 + L + + K + Q +F + +PE+ +PW E + G Sbjct: 854 YSCLKELV------GKEDDGAQMTLFDISVNKPEKT------VKPWNFFERTQCEFDAFG 901 Query: 959 LYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICT 1018 +L HP+ Y K ++ AG++ R + ++ + + Sbjct: 902 FFLFDHPLFPYRKFLKLSPN----------------QIAGVITELR-IRSRGDRKFAVMH 944 Query: 1019 LDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDE-AR 1077 + + VM + + ++ L ++ V ++ G + ++ E Sbjct: 945 VSTVNDIYTVMFYESDVIDSRRELF---VVGVKVVLTLLKSDNGY--VCTNLAELHEFIF 999 Query: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVS 1137 Y AI + + + L+ L G V L + R+ G + ++ Sbjct: 1000 SNYNGRFAILVN----RKEQVTALKDVLRR--GGKYEVTLVVRNDSQYTRIVLGHDFDLA 1053 Query: 1138 PSD-RLLNDLRGL 1149 L+ + L Sbjct: 1054 VDKLALIEGVEIL 1066 >UniRef50_Q1WTT4 DNA polymerase III alpha subunit n=2 Tax=Lactobacillus salivarius RepID=Q1WTT4_LACS1 Length = 1097 Score = 1035 bits (2676), Expect = 0.0, Method: Composition-based stats. Identities = 365/1155 (31%), Positives = 601/1155 (52%), Gaps = 61/1155 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 + L+V S YS++ + + VK LG AL +TD ++ G++ FY AGIKPI Sbjct: 2 YAPLQVLSSYSLLQSPLRISEYVKLGKELGYSALVLTDINSMYGVLDFYHECVKAGIKPI 61 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 +G D +A N+ GYQNL + SK I + E Sbjct: 62 IGITLQSGDDEY-------IFIAKNSNGYQNLMNISSKRLTAVDENYKNIFKLTDITEYL 114 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 185 + +I++ V ++ + V+ E + + P++ ++ Sbjct: 115 QDVIVILNPSYLTVND-IISDQVTELQTLVSAAETI-----YYGV----NPNDRDAINND 164 Query: 186 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 245 + AE L + V+++ D+ + ++ AI G ++ + Y+ + EE Sbjct: 165 LMAAEKLQLETILLTPVKYLKERDYFSTKVLQAIGTGENVN--PNWNFKNDGNYLHTPEE 222 Query: 246 MCELFAD-IPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKRAKEGLEER 303 L D + A N + + +CN+T+ + LP F + S+E +L K +EGL +R Sbjct: 223 YGRLGTDYLSNAYQNAINVIAQCNLTLNFPKTQLPHFKETNGLSSEAFLRKLCQEGLAKR 282 Query: 304 LAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRG 363 +A E +K + EY RL+ EL VI++MGF YFLIV + ++ +N + GPGRG Sbjct: 283 IAE------ENIKNQEEYQNRLDYELSVIHRMGFDDYFLIVWDVTNFAHENNILTGPGRG 336 Query: 364 SGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYG 423 S AGSLV+Y L ITD+DP+++DL+FERFLN ER MPD D+D KRD +IE++ YG Sbjct: 337 SAAGSLVSYTLYITDIDPIKYDLIFERFLNEERAQMPDIDLDIPDIKRDTIIEYLHQKYG 396 Query: 424 RDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPE 483 + ++QIITFGT+ K V+RDV RV D SK IP + G+TL +A+ + L Sbjct: 397 QQHMAQIITFGTLKTKQVLRDVARVFDLKTYEADAWSKAIPKEYGITLKEAYASSQSLKN 456 Query: 484 IYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDK 543 + + + + L + A LEG+ R+ HA G++++ + D P+ +G ++QF K Sbjct: 457 LVADNSKNRLLFETAIALEGLPRHYSTHAAGIILSDDDLVDHVPVQIGGDG-ILMSQFAK 515 Query: 544 SDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRS 603 + VE GL+K DFLGLR L+I+ + +I K + DI I LDD ++ + Q + Sbjct: 516 NQVEEVGLLKMDFLGLRNLSILENTITLIKKGYHID----FDIRKINLDDPETLKIYQNA 571 Query: 604 ETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISY 663 ET+ +FQ ES G++ ++ +L+P FED+ A+ AL+RPGP+Q +D FI RKHG I+Y Sbjct: 572 ETSGIFQFESAGIRGVLTKLKPTSFEDVAAVNALYRPGPIQ--NIDEFIARKHGERPITY 629 Query: 664 PDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQ 723 P + L+ +L+ TYGI++YQEQVMQ+A + G+TLG AD LRRAM KKK + +++ Sbjct: 630 PS-----KELEGILKQTYGIMVYQEQVMQVASTMGGFTLGQADSLRRAMSKKKHDIISRM 684 Query: 724 RSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFM 783 +F GA K G E+A K++ + +F YGFN+SH+ AY+ +S++ ++KAHYPA F Sbjct: 685 EVMFINGAMKKGYTHEVAKKVYAYIMEFGDYGFNRSHAVAYSKMSFELAYIKAHYPAAFF 744 Query: 784 AAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGE 843 AA++ + + N K V E G+K+ PDIN + + +G I +G+ IK + + Sbjct: 745 AALLNSVIGNPRKTKDYVLEAKNKGVKVHHPDINISQSLY-ILRNGGIYFGLSCIKSLRK 803 Query: 844 GPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLG 903 ++ I++ R + G F+ + D R D + L R ++E LI SG FD G R L+ L Sbjct: 804 NFLQDILQERKRSGIFKNMEDFLQRIDKRYLKRELIEILIYSGVFDTFGQSRKELLAMLP 863 Query: 904 DALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTG 963 L + + ++F +LA + +E+ +L+ E LG YL+G Sbjct: 864 RLLSNIEL-----SGNNVELFSILAPKKTTVEKI-----EISNDELLEKENYYLGAYLSG 913 Query: 964 HPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRS 1023 HP+ +Y E+ R+ ++ + + K ++ + +++ TK G+++ T D++ Sbjct: 914 HPVEKYA-ELIYLTNSTRVSQINESNKDKYVSMILQIKVIKIIRTKNGSQMAFVTAADQT 972 Query: 1024 GRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARG 1083 G +++ F +A ++ +LE I+++ G+V D + GL +T + M ++ R K Sbjct: 973 GNMDLTFFPNAYKRFSSVLEDGNIVLIEGRV---DITRGLAITISKAMLANDVRIK---- 1025 Query: 1084 LAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLL 1143 L + D R + L SG +PV + +++ + L S + Sbjct: 1026 -TYYLRLSKAFDTSKRRNLEKLMLQNSGNVPVIIVDEKSGKKKLLNKKLWL--SQDKIVY 1082 Query: 1144 NDLRGLIGSEQVELE 1158 N L L+G E V L+ Sbjct: 1083 NRLVELLGVENVVLK 1097 >UniRef50_D0BKV5 DNA polymerase III, alpha subunit n=1 Tax=Granulicatella elegans ATCC 700633 RepID=D0BKV5_9LACT Length = 1112 Score = 1033 bits (2671), Expect = 0.0, Method: Composition-based stats. Identities = 336/1158 (29%), Positives = 583/1158 (50%), Gaps = 56/1158 (4%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 F L+V S YS++ V A LG LA+TD L G ++FY I+PI Sbjct: 3 FTILQVTSGYSLLRSTIDLYRYVMTAKELGYQKLALTDEGVLHGAIEFYNLCRNQNIEPI 62 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 +G F + + + + V A + GYQ+L L ++ + + + E + Sbjct: 63 IGCLFQYKQWRNAEAFSSMIVYAKDEIGYQSLIELSTQYQKSKLVSKD---MEKIIKEAS 119 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 185 E L ++ + G A E +FP+ + L L Sbjct: 120 EHLQIVFPQENSEWALECSNGEVAFQRWLFEAEERYFPN---IHLGIESNQILPIPLEEL 176 Query: 186 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 245 + + ++ ++ + D ++ + AI DG TL + S Q Y++ E+ Sbjct: 177 EAWGQDFSMKLLPFVKTFYLKAEDDFSYRVLKAIGDGETLSTTQAE--VSGQYYLQDEKT 234 Query: 246 MCELFADIPE--ALANTVEIAKRCNVTVRLGEYFLPQFPTGDMS-TEDYLVKRAKEGLEE 302 + + + I E + E + + LP+F T + +++YL + ++ L++ Sbjct: 235 LTQQSSTILEGKLVRQLEEFVDSLKWKLSKHKLLLPKFQTPEGKMSQEYLQEICQQSLKD 294 Query: 303 RLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGR 362 + + EY+ RL EL +I+QMGF YFLIV + ++++ + G+ GPGR Sbjct: 295 K-----------ELVKDEYESRLNYELSIIHQMGFDDYFLIVWDIMKYAHEAGIQTGPGR 343 Query: 363 GSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMY 422 GS AGSLV+Y L IT +DP+E+ LLFERFLNPER +MPD D+DF +R+ ++++V Y Sbjct: 344 GSAAGSLVSYLLNITKVDPIEYQLLFERFLNPERYTMPDIDLDFPDNRREDILDYVRRKY 403 Query: 423 GRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLP 482 G + V+QI TFGT +K +RDV RVLG SK IP G+ L A+E L Sbjct: 404 GENHVAQIATFGTFGSKQALRDVCRVLGLTTVQAGEWSKAIPNQLGINLKTAYEQSKNLQ 463 Query: 483 EIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFD 542 + + + + + A ++EG+ R+ HA GVV+ +TD PL ++ + P+TQ+ Sbjct: 464 TLVSRSPKNQLIFETACRIEGLPRHLSTHAAGVVLYDKPLTDVIPLIY-KDQQMPITQYT 522 Query: 543 KSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQR 602 VE GL+K DFLGL L+I++ ++E+ + + + IPLDD+K+ ++ Q Sbjct: 523 MKYVEQIGLLKMDFLGLTNLSILHDSIELTKSIY----QHEIILNEIPLDDEKTLELFQM 578 Query: 603 SETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEIS 662 ++T +FQ ES G++ ++K+L+P ED+ A+ AL+RPGP++ +D FI RKHG+E + Sbjct: 579 ADTNGIFQFESDGIRRVLKKLRPTNLEDIAAVNALYRPGPMEQ--IDTFIKRKHGQEVVK 636 Query: 663 YPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAK 722 YP H L+ +L+ TYG+++YQEQVMQ+ ++G+TLG AD+LRRA+GKK + + Sbjct: 637 YP-----HPILESILQSTYGVMVYQEQVMQVTSQMAGFTLGQADILRRAIGKKDAKVIET 691 Query: 723 QRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEF 782 +++ F EGA GI+ A +++ +E+FA YGFN+SH+ AY+L++YQ + KAHYP F Sbjct: 692 EKAHFIEGAIGKGIDVASATEVYQYIERFANYGFNRSHAFAYSLLAYQLAYFKAHYPRAF 751 Query: 783 MAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVG 842 A++ D + K+ E + G+ I P IN+ + + DG I G+ AIKG+ Sbjct: 752 YTAILRFVGDRSPKLQTYFIEAKQRGISIKNPSINTSVDDYTATIDG-IFIGLNAIKGLR 810 Query: 843 EGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSL 902 I+ I+ R + G F + D R + + VLE LI +GAFD LG +RA L ++ Sbjct: 811 RDFIQEILTQRKQNGPFIDFMDFAFRIGKRYCKKEVLEALIDAGAFDELGKNRATLRATI 870 Query: 903 GDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLT 962 +++ H + E E++ Y + ++ E LG ++ Sbjct: 871 DAVIESVKFHGSN----------IALELNEEMYPKYFEEEDSNIIEKIEREIAVLGFPVS 920 Query: 963 GHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDR 1022 P Y + + + K+++ G++ R TK+G + T+ D Sbjct: 921 AFPTEPYEILYKEQ----KANRISTIYESKLVSVLGILKNIRKTRTKKGEPMAFGTIQDE 976 Query: 1023 SGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR---EK 1079 +G ++ ++F + LLE+++++++ G+ S + ++ +EV+ + E + Sbjct: 977 TGEIDFVVFFEVYPIVFSLLEENQLVLLKGK-SRKNLQSKWQVQVQEVLSLLEVEGLAQA 1035 Query: 1080 YARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPS 1139 + I +T++ ++ +++R + + G V LY + D ++ F + V Sbjct: 1036 TSIKCYIKITEKLQTKEVFDQIRNVIINN-PGDTTVLLYIESKDQLLKMNFNSGLAVDA- 1093 Query: 1140 DRLLNDLRGLIGSEQVEL 1157 + L ++G + V++ Sbjct: 1094 -ETIKALSSIVGEKNVKI 1110 >UniRef50_C4YXX0 DNA polymerase III, alpha subunit family n=1 Tax=Rickettsia endosymbiont of Ixodes scapularis RepID=C4YXX0_9RICK Length = 1245 Score = 1031 bits (2667), Expect = 0.0, Method: Composition-based stats. Identities = 425/1252 (33%), Positives = 633/1252 (50%), Gaps = 137/1252 (10%) Query: 3 EPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGI 62 P F+HLR S YS ++ +V+ A++ M A+ + D NL G ++F G+ Sbjct: 2 RPEFIHLRTQSSYSFLESALTIEKVVELASSNKMSAICLADKGNLFGSLEFALYAVKKGL 61 Query: 63 KPIVGADFNVQCDLLG----------------------------------------DELT 82 +PI G N++ ++ D Sbjct: 62 QPIHGVILNIKYNIQHHSASFRQDEFKSKPAERTKVREQRLDSKNSLVSSLLNDAGDIFA 121 Query: 83 HLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRS 142 + ++A + TGY+NL L S + + ID + LIE EGLI L G VG+ Sbjct: 122 QILLIAKDETGYKNLLKLSSLTFTKNDRKICDHIDFEDLIEYQEGLIALCCYTDGIVGKC 181 Query: 143 LLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDV 202 LL N +E DR++ E++R P+E+ + + +A +P+VATN V Sbjct: 182 LLARNEEQAMLFARKLQEILGDRFYFEIMRHDLPEEQFIEDSYIRIAAELAIPLVATNKV 241 Query: 203 RFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVE 262 F + S DAH++ + I G T + P R + S Y RS EM ELF+D+P A+ NTV Sbjct: 242 LFSEKSMHDAHDVLLCISAGVTKEYPDR-KTVSENCYFRSPHEMIELFSDLPSAIQNTVN 300 Query: 263 IAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKEGLEERLAFLFPDE----EERLKRR 318 + +RC LP F T D+S D + K AKEGL RLA F E E + + + Sbjct: 301 LRERCYFAAHANPPMLPNFATKDISETDLIRKDAKEGLLARLATKFKSENISLENQEELK 360 Query: 319 PEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITD 378 EY RL EL +I M F GYFLIV +FI+WSK G+ VGPGRGSGAGS+VA++L ITD Sbjct: 361 TEYFARLNYELDIICNMNFAGYFLIVSDFIKWSKKEGILVGPGRGSGAGSVVAWSLLITD 420 Query: 379 LDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAA 438 LDP++F LLFERFLNPER+SMPDFD+DFC E+R++VI +V YG + V QIITFG M A Sbjct: 421 LDPIKFGLLFERFLNPERISMPDFDIDFCQERREEVINYVRSKYGDNRVGQIITFGKMQA 480 Query: 439 KAVIRDVGRVLGHPYGFVDRISKLIPPDP--GMTLAKAFEAEPQLPEIYEAD-------- 488 KAVI+DV RVL PY F D +++L+P ++L +A P+L + + Sbjct: 481 KAVIKDVARVLSLPYKFADYLTELVPFSAVNPVSLEQAIREVPELANAAKGNGLYNLEGE 540 Query: 489 -EEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVE 547 E +K ++D + LEG+ R++ HA G+VIA T + D P+Y D V + E Sbjct: 541 AELIKLVLDTSLILEGLHRHSSTHAAGIVIAGTDLVDIVPVYKDANSDMLVVGYSMKYSE 600 Query: 548 YAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTA 607 AGL+KFDFLGL+TLT+I +++ ++ +D + DD K++ ML + + Sbjct: 601 IAGLIKFDFLGLQTLTVITDCKKLLKEQG-----IEVDFNNMTFDDNKTYQMLCKGKGVG 655 Query: 608 VFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQ 667 VFQ ES GMKD ++RL+PD D+IAL AL+RPGP++ + +I KH ++ Y Sbjct: 656 VFQFESIGMKDALRRLKPDSIHDLIALGALYRPGPME--NIPTYIACKHKLQQPDY---- 709 Query: 668 WQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVF 727 HE LKP+LE TYG+++YQEQV +IAQVL+GYTLG AD+LRRAMGKK +EM +Q +F Sbjct: 710 -LHELLKPILEETYGVVIYQEQVQRIAQVLAGYTLGAADLLRRAMGKKIKKEMEEQEEIF 768 Query: 728 AEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVM 787 +GA N I+ A IF V KFAGYGFNK+H+AAY ++SYQT +LKA+YPAEF+ A + Sbjct: 769 VKGAIANNISESQAKSIFATVAKFAGYGFNKAHAAAYGVISYQTAYLKANYPAEFLVACL 828 Query: 788 TADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEI---------------- 831 +++N +K+ + E G+KI+ P+IN +F V + Sbjct: 829 NLELNNHDKINLFLQEAKDNGIKIIAPNINISEGYFSVKSSDTVIPRAATCHPQGSLCHP 888 Query: 832 ----------------------VYGIGAIKGVGEGPIE-AII------------------ 850 + I+G+G E AII Sbjct: 889 RESGDPEKLETALNHKSMKMDSRFRGNDIEGIGYDKEENAIIFALGAIKGVTPNFGKLVT 948 Query: 851 EARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAAD 910 + R G F+ + D R K +N ++LE LI SG FD L +R L +S+ L + Sbjct: 949 DERKARGMFKSITDFIERLPPKSINSKLLENLIKSGCFDELHDNRLQLFSSISKLLSYST 1008 Query: 911 QHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYL 970 + + + Q + V P S + + E E +GL+++ HP+ QY Sbjct: 1009 SYHEEQGSNQFSLIKVSTLSPTI----LVSSDYADKNTLAFYEFEAMGLFISNHPLMQYQ 1064 Query: 971 KEIERYVGGVRLKDMHPTERGK-VITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVM 1029 + R + G + AG++ ++ RG R L D E+ Sbjct: 1065 EIFSRLNILNTADLQNNLPEGTNRVNLAGVIQKKDSRMSARG-RFVTLVLSDPENIFELS 1123 Query: 1030 LFT-DALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISL 1088 +F+ + L Y LL+ +++V+ + D+ GG+K+TA+ + I++A L + Sbjct: 1124 IFSEEVLKDYVHLLDVKSLVVVNCDIIKDE--GGIKLTAKSFLSIEDAINNKQFELQLYP 1181 Query: 1089 TDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADAR---ARLRFGATWRVS 1137 + + Q++ L + +Y Q D + A++ + + Sbjct: 1182 QNHEELLQIVTLLATRINNRDQSNAKATIYLQSEDVKNFVAKITLPEKFFLQ 1233 >UniRef50_B1MYD7 DNA polymerase III, alpha subunit n=3 Tax=Leuconostoc RepID=B1MYD7_LEUCK Length = 1113 Score = 1018 bits (2632), Expect = 0.0, Method: Composition-based stats. Identities = 330/1162 (28%), Positives = 571/1162 (49%), Gaps = 62/1162 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 + L++ S YS++ +++ A A+A+TD + G V+FY GIKP+ Sbjct: 2 YAPLQILSAYSLLKNPNTITQIIRTAKDRHYGAIALTDINVMYGAVEFYQKAKDMGIKPL 61 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 G V + L ++A N TGYQNL L S + D L++ Sbjct: 62 FGVTLQVNGLVNTSTTFPLVLIAENQTGYQNLMWLSSAKMTAQDT----TMTFDLLVDHL 117 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 185 +G+ ++ ++ + + + + + ++ + P Sbjct: 118 QGIHVILP-HDSELSQLIASEYQEVDNYWHQLSNKIDDQHLYIGIHPQLAP---QIRARL 173 Query: 186 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 245 + ++ +VA +DV ++++ D ++ AI LD K S + E+ Sbjct: 174 AQFSQIHQASLVALDDVDYLNADDAFTTQVLKAIDANVKLDGIKALAQQSGSHVLVDFEQ 233 Query: 246 MCELFADIPE---ALANTVEIAKRCNVTVRLGEY-FLPQFPTGDMST--EDYLVKRAKEG 299 + + + D A N ++ R +V++ + LP F + +YL A G Sbjct: 234 LRQSYQDDEALKLAFKNNEQLVARSHVSLTFKQTTALPPFQLPAETANAAEYLKNLAMTG 293 Query: 300 LEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVG 359 L ++ ++ +Y ERL EL +IN++GF YFLIV + + ++K N + +G Sbjct: 294 LNAKM-------HITSQQHAQYLERLHNELAIINKLGFNDYFLIVWDIVNFAKQNHIQLG 346 Query: 360 PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVA 419 GRGS AGSLVA++L ITD+DP++F LLFERFLN ERV MPD D+D+ +R+ V+ ++ Sbjct: 347 VGRGSAAGSLVAFSLGITDIDPVKFGLLFERFLNAERVQMPDIDIDWPDNRREDVLAYLH 406 Query: 420 DMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIP---PDPGMTLAKAFE 476 YG+ +QIITFGT+AAK +RD RV G + RIS +P +T+ +A + Sbjct: 407 QKYGQRNFAQIITFGTLAAKQALRDTARVFGVSQTMMSRISNAVPQGKQGRRVTIGEALK 466 Query: 477 AEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKH 536 L + + L+ A+K+EG+ RN HA GVV++ + + + P+ E Sbjct: 467 DSDALSRVLGDIDNGDLLLKTAQKIEGLPRNYSTHAAGVVLSDSPLVNTLPVQSGSES-R 525 Query: 537 PVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKS 596 +TQF+K+ VE GL+K D LGL LTI+ L + DI +PLDDK + Sbjct: 526 LLTQFEKNPVEALGLLKIDILGLSNLTILAQTLYYAKQYLPDR----FDIGHVPLDDKAT 581 Query: 597 FDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKH 656 + + +T VFQ ES G+K ++K+LQP FE ++A+ AL+RPGP S +++FI R+H Sbjct: 582 LALYAKGDTNGVFQFESSGIKHVLKQLQPATFEHIVAVNALYRPGP--SRNIESFIKRRH 639 Query: 657 GREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKK 716 G+E ++ SLK +L PT+GII+YQEQVM +A+ +G+TLG AD+LR AM KKK Sbjct: 640 GQETVT-----VLDPSLKTILAPTFGIIVYQEQVMLVAEKYAGFTLGEADVLRSAMSKKK 694 Query: 717 PEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKA 776 +MA F GA G + A +IF +++FA YGFN+SH+ AY+ +S+Q ++K Sbjct: 695 LAQMADMHGKFISGAVSQGHDQSQAEQIFAYIDEFANYGFNRSHAVAYSKLSFQLAYMKV 754 Query: 777 HYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIG 836 HYP F A++ A++ + +K+ V E G+ + P++N + +N D + G+ Sbjct: 755 HYPIAFFTALLNANLGSPDKIRLYVTEAKARGIVVKAPNVNQSDRFWTINKD-FLQMGLH 813 Query: 837 AIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRA 896 +IKGV + A+I+ R G F + L R K R VL +++ +GA D G +R Sbjct: 814 SIKGVRTDFVAALIDERKNNGPFESIQSLVRRLPEKFRKRDVLTQMVYAGALDSFGYNRV 873 Query: 897 ALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERET 956 L+ +L D ++AA E E L E+ET Sbjct: 874 ELVTALDDLIEAAS-----------------FGELILSETKIKKMADITLTEKLVHEKET 916 Query: 957 LGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGI 1016 +G+ L+GHP++ + I + ++ D+ + + ++ + R TK+G + Sbjct: 917 IGVNLSGHPLDTFASII-KQNDFQQIADVSLAKE--PVKMIVMIDSVRQTRTKKGETMAF 973 Query: 1017 CTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEA 1076 T+ D +G + + +F K +L+ ++ ++G D + G + + AR++ + Sbjct: 974 VTVSDTTGTISLTIFHQLFVKISDMLKTGNMIQITG--QSDSYKGKMSVIARQITAPPQI 1031 Query: 1077 REKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRV 1136 + + + ++ + + + H G P+ +++Q++D ++ A + + Sbjct: 1032 PTAESGTWFLRFDEEHDNEANRQAVIEIFKKHH-GDNPIIIHWQKSDQNQQI--DAKFWM 1088 Query: 1137 SPSDRLLNDLRGLIGSEQVELE 1158 + ++ +L L+G + + Sbjct: 1089 NSETAIIRELAPLLGYDNIVFR 1110 >UniRef50_C5RC77 DNA-directed DNA polymerase III, alpha chain n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RC77_WEIPA Length = 1122 Score = 1015 bits (2626), Expect = 0.0, Method: Composition-based stats. Identities = 359/1167 (30%), Positives = 580/1167 (49%), Gaps = 64/1167 (5%) Query: 7 VHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIV 66 V L+ + +S++ L+K G A+A+TD+ L G+ FY A A I+PI+ Sbjct: 2 VPLQTMTAFSLLRSPMTPQQLIKAVQDKGYQAVALTDYNVLYGMYDFYQAAQAADIQPIL 61 Query: 67 GADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNE 126 G + L + + L N GY NL + S + + D L Sbjct: 62 GLTAELI-GLQSSQSYPVIFLVENQVGYHNLLQISSAINTQNEK-----MTLDDLKSYLS 115 Query: 127 GLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRTGRPDEESYLHAA 185 GL ++ G++ LL V FL + R E+ L + Sbjct: 116 GLYIILPSI-GELAV-LLGTEPERAMTLVKTVTALADATHVFLGVSLDMR---EAMLQSI 170 Query: 186 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 245 ELA+ G ++A +V + ++SD + ++ + G + + + + Y++ + Sbjct: 171 KELAQNTGTRIIANENVLYPNASDQFSAQVIQKLGQGEIISNVGLAQKQAATAYLKESTD 230 Query: 246 MCELF--ADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKRAKEGLEE 302 + + +A+ NT IA V + +P++ T S+ DYL + A GL Sbjct: 231 WANEYNSRGLSDAVENTDWIAAHSYVVLEQSSVTVPKYETPQGQSSSDYLAELATTGLTN 290 Query: 303 RLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGR 362 RL + D Y RL+ EL++IN++GF YFLIV + + ++ + GPGR Sbjct: 291 RLHDMAVDATP-------YKARLKEELRIINELGFADYFLIVWDVLNYAHKKSIRTGPGR 343 Query: 363 GSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMY 422 GS AGSLVAY L ITD+DP+ +DLLFERFLNPER MPD D+D +R+++++++ + Y Sbjct: 344 GSAAGSLVAYVLWITDVDPIAYDLLFERFLNPERHQMPDIDIDIPDNRREEILDYLHEHY 403 Query: 423 GRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLP 482 G + V+QIITF TMA +AVIRDV RV G +D +SK +P +L ++E+ Sbjct: 404 GHERVAQIITFSTMAQRAVIRDVARVFGLNPTQIDNLSKSMPRGTA-SLQASYESSLPFR 462 Query: 483 EIYEADE-EVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQF 541 + + L A KLEG+ RNA HA GVV++ + ++ P+ ++G VTQ Sbjct: 463 NALLDLPVDGQLLYQTALKLEGLPRNASLHAAGVVLSAEPLANYMPVQLGDDG-RLVTQL 521 Query: 542 DKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQ 601 K VE GL+K DFL L L I++ A+ I K IA++ LDD+ + + Q Sbjct: 522 PKGPVEALGLLKMDFLALSNLNILDIAIREIQK---IPDHESFSIASVSLDDQATLRLFQ 578 Query: 602 RSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEI 661 T VFQ ES GMK+++++L+PD FED++A ALFRPGP+Q + +F+ RKH E+ Sbjct: 579 NGLTNGVFQFESGGMKNILRQLRPDSFEDIVAANALFRPGPMQ--NIPHFVARKHQEEKQ 636 Query: 662 SYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMA 721 PD S+ +L PTYGII+YQEQVM++A+ +G++LG AD+LRRAM KK +++A Sbjct: 637 DVPDA-----SMAEILAPTYGIIVYQEQVMRVAERFAGFSLGEADLLRRAMSKKDHDKIA 691 Query: 722 KQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAE 781 +S F +GA + ++A ++F +E FA YGFN+SH+ AY+ +++Q ++KAHYPA Sbjct: 692 AMQSKFIDGAVGRHHDQQVAEQVFSYIETFAQYGFNRSHAVAYSKLAFQLAYIKAHYPAA 751 Query: 782 FMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGV 841 F AV+ + + +KV + E + IL P +N + +N GE+ G+ +I G+ Sbjct: 752 FYKAVLNDSIADHKKVGIYIAEAKLSHVTILRPSLNHSWQGYSMNKQGELQMGLASISGL 811 Query: 842 GEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNS 901 EA+I+ R +GG +R+L + R +K LE LI +GA D G +R L+ S Sbjct: 812 RRDFREALIQERQEGGQYRDLTNFIGRLPSKYRKVSQLEPLIYAGALDEFGFNRKTLLGS 871 Query: 902 LGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYL 961 + + A + G E + +P L E E LG+YL Sbjct: 872 MQGYIDAV------------GLAGESISLFESLTPKMHEVAEFPLNEKLGYEHEYLGVYL 919 Query: 962 TGHPINQYLKEIERYVGGVRLKDMHPTERG-KVITAAGLVVAARVMVTKRGNRIGICTLD 1020 +GHPI YL I D+ G +T V + + TK+G+ + Sbjct: 920 SGHPIEPYLAAIPENRRT----DIANLAVGMTSVTVVIYVQNVKKIRTKKGDPMAFVDGI 975 Query: 1021 DRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKY 1080 D +G L + +F K + LL +++L+++G++ L+M A +V++ DE + Sbjct: 976 DLTGTLSITIFPTVFKKIEPLLVNEKVLLITGKIEQQRGRDTLQMIANQVINGDELLAES 1035 Query: 1081 ARG---------LAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG 1131 + + + D ++ L+ L H G PV + ++R ++ Sbjct: 1036 SVSEKAAASTGQWYLRIMASAEDAGIMPALQNILRQHH-GANPVLIVFERD--HRKIALN 1092 Query: 1132 ATWRVSPSDRLLNDLRGLIGSEQVELE 1158 T+ ++ D +R ++G V + Sbjct: 1093 ETYWLTADDETGEAIRSILGENNVVFK 1119 >UniRef50_B2GC21 DNA-directed DNA polymerase III alpha subunit n=3 Tax=Lactobacillus fermentum RepID=B2GC21_LACF3 Length = 1099 Score = 1015 bits (2625), Expect = 0.0, Method: Composition-based stats. Identities = 370/1163 (31%), Positives = 580/1163 (49%), Gaps = 79/1163 (6%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FV L V S YS+++ + A LV A G A+ + D L G V F + AG+ P+ Sbjct: 3 FVPLAVKSMYSLLEAPVRPAELVAVAKERGYQAVGLVDARVLYGAVNFVRRANQAGLHPV 62 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 +G + + +T+LA GYQNLT L ++A + + L E + Sbjct: 63 IGVSLPLTF---AEGTLDVTLLAKGAVGYQNLTRLSTRAMTDRANQP---LTIEDLREGS 116 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 185 + L+++ + +L G S + ++ + Sbjct: 117 DDLVVIVA------PQLMLLGVSEQTYAQLGEVADYLGINL---------DFTAAERQDL 161 Query: 186 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 245 +AE GLP++A V +++ D+ A ++ AI G T++DP + + + ++R EE Sbjct: 162 QAVAERCGLPLIAFEPVEYLNEDDYFATQVLRAIKAGHTIEDPLKASQRTGRHWLRPAEE 221 Query: 246 MCELFADIPEALA--NTVEIAKRCNVTVRLGEYFLPQFPTGDMS-TEDYLVKRAKEGLEE 302 + + A A TV +A+RC V LP FPT DYL + + GL + Sbjct: 222 VAAAYRAAGLAEAAAQTVAVAERCQVHFADQTPVLPAFPTPAGQGVADYLRELCQRGLAK 281 Query: 303 RLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGR 362 R + EY RLE EL VI+QMGF YFLIV + + ++ + + GPGR Sbjct: 282 R---------KLAGDPAEYQARLEHELTVIHQMGFDNYFLIVWDLMNFAHQHQILTGPGR 332 Query: 363 GSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMY 422 GS AGSLVAYAL ITD+DPL++ LLFERFLNPER MPD D+D +R++V+ ++ Y Sbjct: 333 GSAAGSLVAYALAITDVDPLQYGLLFERFLNPERAQMPDIDLDLPDNRREEVLNYLHHHY 392 Query: 423 GRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP--DPGMTLAKAFEAEPQ 480 G + V+QIITFG++ K V+RDV RV P VD +S++I P TLA E+ Sbjct: 393 GHERVAQIITFGSLGTKQVLRDVSRVFNLPKYQVDSLSQVIDRVKGPHQTLADLLESAQP 452 Query: 481 LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEE-GKHPVT 539 + + + V L+++A KLEG+ R+ HA GVV+A + PL E G VT Sbjct: 453 VQNLARDSKLVACLLEVAAKLEGLPRHDSIHAAGVVLAAEPLIKTVPLQAGNEPGAMLVT 512 Query: 540 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 599 QF+K VE GL+K D LGLR LT + AL +I++ +P D+ I L+D+ + + Sbjct: 513 QFEKDTVESLGLLKIDLLGLRNLTTVETALNLIHQH-----QPDFDLTHIALNDRPTLAL 567 Query: 600 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 659 R +T+ +FQ ES G++ + L PD FE+++A+ AL+RPGP+ +++FI RK G+E Sbjct: 568 FDRGQTSGIFQFESSGIRQTLVNLHPDNFEEIVAVNALYRPGPMD--NINHFIARKKGQE 625 Query: 660 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 719 ++ P + L P+L PTYGI++YQEQVMQ+A V+ G++LG AD+LRRAM KKK Sbjct: 626 AVNLPA-----KELAPILAPTYGILVYQEQVMQVAAVMGGFSLGEADLLRRAMSKKKLAT 680 Query: 720 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 779 MA + F GA K G +A ++F +++FA YGFN+SH+ AY+ ++++ +LK H+P Sbjct: 681 MASMKEAFLAGANKRGYPNAVAEQVFAYIDQFANYGFNRSHAVAYSKMAFEMAYLKVHFP 740 Query: 780 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 839 AEF+AA+M + D T KV E ++G+ P IN + D E+ G+ IK Sbjct: 741 AEFLAALMETNPD-TSKVWAYFSEAKQLGITTHGPAINQSQERVSLVDQ-ELWLGLDMIK 798 Query: 840 GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 899 G+ I AIIE RN+ G +++L DL R D K + LI +GA D LG +RA + Sbjct: 799 GLRRDFIRAIIEERNQHGPYQDLPDLVNRLDAKWHKEDLFVPLIDAGALDHLGYNRAEMA 858 Query: 900 NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 959 L L+ A+ A + A +P V L E LG Sbjct: 859 EGLKAILEGAEY----------------AGLGLGMAPVVAQRNEYPLAVRLAREHAVLGT 902 Query: 960 YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRG-NRIGICT 1018 YL+GHP++QY + +L + + + +V R + TKR + T Sbjct: 903 YLSGHPVSQYQDLRTKL----KLPTVAQLRPKQRVRLVLMVTRMRKVTTKREHKPMAFLT 958 Query: 1019 LDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEARE 1078 D +G +EV +F + + L + I +++ + + G +++ A +V D Sbjct: 959 ASDETGAVEVTIFNRLFTQLEGELRVNGIYLITAKTEQRE--GQVQLLADQVTDAQVVNR 1016 Query: 1079 KY---ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWR 1135 + + L + + ++ + H +G +PV +Y + + Sbjct: 1017 ELHPADHRWVLRLPSGVAQTTVTDGIKALAKEH-AGNVPVVIY--DPVTQKATQLPGQLW 1073 Query: 1136 VSPSDRLLNDLRGLIGSEQVELE 1158 ++ + L L+G + + Sbjct: 1074 LAKQRVVQEGLINLVGRSNLAFQ 1096 >UniRef50_B9L411 Error-prone DNA polymerase n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L411_THERP Length = 1059 Score = 1015 bits (2625), Expect = 0.0, Method: Composition-based stats. Identities = 346/1107 (31%), Positives = 538/1107 (48%), Gaps = 84/1107 (7%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 + L HS +S++D LV++AAALG LA+TD L G+V+F A GI P Sbjct: 4 PYAELHAHSCFSLLDAPCHPEQLVQQAAALGYEHLALTDHDALHGVVRFVRAAERVGIHP 63 Query: 65 IVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGP---------- 114 IVGA+ + ++ +HL +LA + GY L L+S A GP Sbjct: 64 IVGAEITM------EDGSHLALLAEDERGYATLARLLSAARLGWPTPEGPGSEDTALAGS 117 Query: 115 ------IIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYF 167 + WL++ ++GLI+L+G R G + R+L GN A + F P+R F Sbjct: 118 PARRAVALPWHWLVDHHDGLIVLTGCRQGPLARALTEGNRADALARAHWLARVFGPERCF 177 Query: 168 LELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDD 227 +EL G + LA GLP+VAT +V ++D++ + ++ V I +G T++ Sbjct: 178 VELQDHGERGDRERCTELAALARTAGLPLVATGNVHYLDAAGWRLQDVLVCIREGITIET 237 Query: 228 PKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFP---TG 284 P R S + + M F P+A+ANT IA+RC V++ + P P Sbjct: 238 PHPARKTSAAYRLVAPASMAHRFRSFPDAVANTRRIAERCQVSLDFRQVRFPPLPHLVPP 297 Query: 285 DMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIV 344 + L ++A EG + R L +LE EL VI ++G +FLI Sbjct: 298 GETPMQVLRRQAYEGAQRRYGQL----------SEPVVRQLEHELGVIERLGVAEFFLIC 347 Query: 345 MEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDV 404 + + G GRGS A SLVAY L IT +DPL LLFERFLN ER SMPD D+ Sbjct: 348 ADLANRFR------GRGRGSAADSLVAYCLGITQVDPLAHRLLFERFLNEERPSMPDIDI 401 Query: 405 DFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIP 464 DF +E R++ I +V YG + + + + T A++ IRD+GRVLG P +D ++K Sbjct: 402 DFGLEDRERAIAYVYATYGVEHAAMVCNYVTFQARSAIRDLGRVLGLPPEIIDELAKSQG 461 Query: 465 PDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524 A P+L + + L+ + +LE + R+ H GG+VIA + + Sbjct: 462 RLGEALPVLARALAPRLS--PDLRRRLAWLVRLVPQLEDIPRHLSVHVGGMVIAGRPVVE 519 Query: 525 FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584 F + V +DK D+E AGL+K D L +R +++++ A+E+I + + Sbjct: 520 FTTVEPSRMPGRVVLGWDKRDIEEAGLIKTDVLCVRAISVVHQAIELIEQASGLR----I 575 Query: 585 DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644 D+ +PLDD + +LQ ++T +Q+ESR + + R P+ FED+IA VA+ RPGP+Q Sbjct: 576 DLEQLPLDDPAVYRLLQTADTIGTYQVESRAQQQSLPRTHPERFEDLIAQVAIIRPGPIQ 635 Query: 645 SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704 GMV +I R+ G E + Y H L+P+L T G+ILYQEQV+++A ++G T G Sbjct: 636 GGMVHPYIRRRRGLEPVRY-----LHPKLEPILRETLGVILYQEQVLEVAMAIAGMTAGQ 690 Query: 705 ADMLRRAMGKKK-PEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAA 763 AD RRAMG K+ M R F GAE+NG+ +A +IF+ + FA YGF KSH+AA Sbjct: 691 ADAFRRAMGSKRSRAAMEALRGDFLAGAERNGVARPVAERIFEQIAAFAEYGFCKSHAAA 750 Query: 764 YALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHF 823 A +Y+TLWL+AHYPA + A++ L+ + R G+ +LPPD+ + Sbjct: 751 LARTAYETLWLRAHYPAALLCALLNNQPMGFYAPEVLIWDALRRGIHVLPPDVLASAARS 810 Query: 824 HVNDD---GEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLE 880 + D G + G+ A++GVG E I+ AR++ FR+ D+ R +L +E Sbjct: 811 TLTGDPVHGPVRLGLTAVRGVGRAAAERIVAARSEE-PFRDTADVVRRA---QLTPEQVE 866 Query: 881 KLIMSGAFDRLGPH--RAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSY 938 L++ GAFDRL P R L+ L A ++ + + + + Sbjct: 867 ALVLVGAFDRLAPDRSRRELLWDL--LAVATERPERPRLL--------------DVSEPA 910 Query: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998 + LG L H + Y + R + + G AG Sbjct: 911 VRLPELDTVEQTFLDYAILGFCLDRHLMELYRAQ-RRILRVTPAARLRTLPPGATARVAG 969 Query: 999 LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDD 1058 LVV + T RG + TL+D +G + V++ ++++ LL + +L++ G+V + Sbjct: 970 LVVCRQAPPTARG--VLFLTLEDETGLVNVIVPPPVREQHRALLRRQPVLVIDGRVERE- 1026 Query: 1059 FSGGLKMTAREVMDIDEAREKYARGLA 1085 + A EV + + Sbjct: 1027 -GALASLVAEEVRPLGRPLSAQPTRVR 1052 >UniRef50_Q67N73 Error-prone DNA polymerase n=1 Tax=Symbiobacterium thermophilum RepID=DNAE2_SYMTH Length = 1085 Score = 1012 bits (2618), Expect = 0.0, Method: Composition-based stats. Identities = 373/1125 (33%), Positives = 565/1125 (50%), Gaps = 92/1125 (8%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS FVHL VHS +S +DG ++ L+ +AA GMPALA+TD N+ G V+F A Sbjct: 1 MS---FVHLHVHSPFSFLDGASRLDDLIAEAALHGMPALALTDHNNVSGAVRFQRKAQEA 57 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQ-------------- 106 GI+PI GA+ + + HLT+LA GY NL LI+ A+ Sbjct: 58 GIQPIQGAELTL------EGGYHLTLLATGPKGYANLNRLITAAHLGQEPRATPGAMFAL 111 Query: 107 -RGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDR 165 G+ P L +GLI LSG R G++ +LRG A + Y FP R Sbjct: 112 APGHDRLQPACPLSALSHDTDGLIALSGCRRGEIPSLILRGRLAEAEAAARRYAAWFPGR 171 Query: 166 YFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTL 225 ++LEL P E++ A +L EA GLP+V T++V +F H++ + + Sbjct: 172 FYLELHDERLPGEQALNRALRDLGEALGLPLVVTSNVHHRTREEFFVHDLLTCVRTLTRI 231 Query: 226 DDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGD 285 D P R + Q+Y++ E M E F + PEA+ NT+ IA+RC + L P+F T D Sbjct: 232 DQPHPERPLNDQRYLKPPEVMIERFREFPEAVKNTLAIAERCRPVLDLDARLHPEFQTPD 291 Query: 286 MS-TEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIV 344 S YL +G R + RLE EL +I ++G+ YFL+V Sbjct: 292 GSHPAAYLTHLVYDGAARRYGRI----------TERIRRRLEHELTIITRLGYEDYFLLV 341 Query: 345 MEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDV 404 + ++++++ G+ GRGS A S VAY L ITD+D +E LLFERF++ ER PD D+ Sbjct: 342 WDVVRFARERGIR-CAGRGSAADSAVAYCLFITDVDAIERGLLFERFMSLERAQKPDIDI 400 Query: 405 DFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIP 464 DF +RD+V +V YG D V+ + T+ T A++ +RD+G+ +G +D ++K IP Sbjct: 401 DFDARRRDEVAAYVYRKYGADHVASVCTYNTFQARSAVRDLGKAMGFQEADLDYLAKRIP 460 Query: 465 PDPGMT-LAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKIT 523 G + P+L + + + L+ A ++ R G H GG+VI+ + Sbjct: 461 WHAGADEILTVMARYPELRQSGIPWHKFEQLVQAAERVARFPRFIGTHLGGLVISRRPLL 520 Query: 524 DFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPP 583 + PL +G V QFDK VE GLVK D L LRT T ++ A+ I Sbjct: 521 EVTPLQMAAKG-QVVCQFDKEYVEDLGLVKLDLLSLRTFTAVDDAVRAIG---------D 570 Query: 584 LDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPL 643 +D IP D +++ML E+ VFQLES + L RL+PD FED++A VA+ RPGP+ Sbjct: 571 IDYEQIPHGDAATYEMLGVGESIGVFQLESPAQRALQARLKPDRFEDIVASVAIIRPGPI 630 Query: 644 QSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLG 703 + MV+ F+ R+HG+EE++Y H LKP+LE TYG++L+QEQV++IA ++G+T G Sbjct: 631 KGNMVEPFLARRHGKEEVTY-----LHPKLKPILEKTYGVVLFQEQVIEIATAVAGFTPG 685 Query: 704 GADMLRRAMGK-KKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSA 762 AD LRR M + E+M +F + A G++ +A IF ++ +A YGF ++H+A Sbjct: 686 EADQLRRVMTHARNREDMEAIGRLFRQKAAAAGVDPAVADTIFSYIQGYASYGFCEAHAA 745 Query: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 A+A +Y+T +L HYPAE+ AA+M+A + L E R G+ +LP DIN Sbjct: 746 AFANTAYKTAYLVRHYPAEYFAALMSAQPMGYYPINTLAVEARRRGVGLLPVDINRSEEA 805 Query: 823 FHVND----------------------DGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFR 860 F V + I G+ A+KGVGE AI+ AR+ GG FR Sbjct: 806 FTVEEWSREAWEAFWGMEPFAPEYPATGKAIRIGLRAVKGVGEPAAAAILAARD-GGEFR 864 Query: 861 ELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQ 920 L DL RT + R LE L+++GAFDRL +R A + + L+ A++ + GQ Sbjct: 865 SLADLVRRTG-GAVPRGPLEALVLAGAFDRLHSNRRAALWQVAHLLE-AERIRQERGAGQ 922 Query: 921 ADMFGVLAE---------EPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLK 971 A + A Q + + E E GL + H + + Sbjct: 923 AGLLDGDAPGLGAQAAEALEAASPQGTPAIADFGAAERYLKEYELTGLMVRTHFMRFVRE 982 Query: 972 EIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 + R G + +++ G+++ AGL V T+ G + +L+D +G +++ +F Sbjct: 983 RLAR-EGYLTAQEVRQRRAGELVKVAGLPVCPHRPPTRSGKIVVFLSLEDETGLIDLTIF 1041 Query: 1032 TDALDKYQQLLEKD--RILIVSGQVSFDDFSGGLKMTAREVMDID 1074 D +Y L+ D L G+V D G + +T + +D Sbjct: 1042 EDVYQRYGHLIFTDPRPPLAALGRV--DRRGGHVSITVNRLRLLD 1084 >UniRef50_Q03F73 DNA polymerase III catalytic subunit, DnaE type n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03F73_PEDPA Length = 1107 Score = 1010 bits (2612), Expect = 0.0, Method: Composition-based stats. Identities = 344/1140 (30%), Positives = 577/1140 (50%), Gaps = 58/1140 (5%) Query: 22 AKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVQCDLLGDEL 81 K L+ A G A+ +TD + G V+FY A +KPIVG + D Sbjct: 19 IKIDDLIATAKNRGYQAMTLTDHNTMYGTVEFYQACIKNNLKPIVGLTLWLDSTTGIDNQ 78 Query: 82 THLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGR 141 L ++A + GY+NL + S + P D + +L + LI++ + ++ Sbjct: 79 FALVLIAKSVKGYRNLMQISSAKMTS----STPKFVFDDIKDLLDDLIMIVPAQRSEMIE 134 Query: 142 SLLRGNSALVDECVAFYEEHFPD-RYFLELIRTGRPDEESYLHAAVELAEARGLPVVATN 200 L RG S E + Y + D +L + +++AE L + Sbjct: 135 LLERGLSGDATELLENYRQVVGDEDLYLGI---NLKQTNIMRQTLMQIAEKHSLGCLPLP 191 Query: 201 DVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFAD--IPEALA 258 V +++S D A ++ I G + P+ +++ + + + D + E L Sbjct: 192 SVEYLNSEDHFATQVLKDIASGEVIKHPEILAKDQGNNWLKPRDVFEKEYRDAGLSELLD 251 Query: 259 NTVEIAKRCNVTVRLGEYFLPQFPTG-DMSTEDYLVKRAKEGLEERLAFLFPDEEERLKR 317 + + + + + LP+FPT + S YL + + LE+ + + Sbjct: 252 QLDALTSQIELKIPFVQPKLPKFPTPANQSAIQYLKELCFQQLEK----------SKNAQ 301 Query: 318 RPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKIT 377 +Y +RL+ EL VI MGF YFLIV + +Q++ N + GPGRGS AGSLVAY L+IT Sbjct: 302 NLQYQQRLDRELNVIESMGFADYFLIVHDVVQFAHQNHILTGPGRGSAAGSLVAYLLRIT 361 Query: 378 DLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMA 437 +DP+E+ LLFERFLNPER MPD D+D +KR+ ++++V D YG V QIITFGT+A Sbjct: 362 SVDPIEYGLLFERFLNPERAQMPDIDLDIPDDKRELMLKYVHDKYGHQHVGQIITFGTLA 421 Query: 438 AKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDM 497 AK IRDV RV G +++IS LIP + +TL +A E +L E E+ + + + Sbjct: 422 AKQAIRDVARVFGEMPNKINQISALIPSELNITLERALENSSKLQEFIRTSEKNRFMFET 481 Query: 498 ARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFL 557 AR+LEG+ R+ HA G+V++ +T+ P+ D ++Q+ K+ VE GL+K DFL Sbjct: 482 ARRLEGLPRHYSTHAAGIVLSENNLTETTPVQ-DGNEGMLMSQYSKNYVERVGLLKMDFL 540 Query: 558 GLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMK 617 GLR L+++ L+ +++ +P DI I L+D K+ ++ QR +T+ +FQ ES G++ Sbjct: 541 GLRNLSLMANILDQVHQ-----LKPDFDIENINLNDTKTLELFQRGDTSGIFQFESAGIR 595 Query: 618 DLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVL 677 +++++++PD F ++A+ AL+RPGP++ +D F+ RK RE S+P ++ L +L Sbjct: 596 NVLRKVKPDRFGLVVAVNALYRPGPME--NIDRFVKRKEHREHYSFP-----NDVLSEIL 648 Query: 678 EPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGIN 737 T+GI++YQEQVM++A + G +LG AD+LRRAM KKK + + + R+ F +GA + G N Sbjct: 649 GETFGILVYQEQVMEVASAMGGLSLGQADLLRRAMSKKKHDVIEQMRTNFIDGALQKGYN 708 Query: 738 AELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKV 797 A+L +++ +E FA YGFNKSH+ AY+ +++Q +LK ++P F A++ + + K Sbjct: 709 AKLTQQVYSYIENFANYGFNKSHAVAYSKLAFQLAYLKTYFPGPFYTALLNSVIGGEAKT 768 Query: 798 VGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGG 857 + E R+G+K+ PDIN + +I+ G +IKG+ I +IE R G Sbjct: 769 KEYIQELNRLGIKVKAPDINLSQLQYAFYQQ-QIIMGFLSIKGLRRDFIRNLIEERQSNG 827 Query: 858 YFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEA 917 F+ + L R K + ++EKLI SG D G +RA L + L + LK Sbjct: 828 EFKSVDSLLRRMRDKGITEEIIEKLIFSGTLDSFGYNRAELGDFLPELLKGIA------- 880 Query: 918 IGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYV 977 G + E++ + LD E E LG Y++ HP+ +Y IE+ Sbjct: 881 -----FSGQNVDLFEKLMPTIKHRPDMDLDEKLDWEEELLGTYISAHPVERYANLIEQ-- 933 Query: 978 GGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDK 1037 K + +T + + R + TK+G + + D +G E ++F + Sbjct: 934 --NGFKKIDEFSDEAQVTTIVYIRSIRTIRTKKGESMAFANITDPTGESEAVIFPRIY-Q 990 Query: 1038 YQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQL 1097 + ++L R+L + G+V + GL++ E+ ++ A + + R + Sbjct: 991 HAKILRNKRVLQLRGKVE--KRNDGLQLIVNEITAPQT-KQVQAAIWKLEVPSRNNSSEF 1047 Query: 1098 LNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSEQVEL 1157 +L + G +PV L Y+ + + ++ S + L L+GS+ + L Sbjct: 1048 QTKLFDIFRKYH-GKVPVILVYEDTNEHN--ELSEKFYLNDSSEVKEQLAELLGSQHISL 1104 >UniRef50_Q5Z1D1 Error-prone DNA polymerase n=42 Tax=Bacteria RepID=DNAE2_NOCFA Length = 1146 Score = 1010 bits (2612), Expect = 0.0, Method: Composition-based stats. Identities = 308/1136 (27%), Positives = 502/1136 (44%), Gaps = 99/1136 (8%) Query: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61 + L HS YS +DG ++ LV++A LG+ A+A+TD G V+F A G Sbjct: 58 PTVPYAELHAHSAYSFLDGASQPEELVEEAVRLGLEAIALTDHDGFYGTVRFAEAAKEWG 117 Query: 62 IKPIVGADFNV----------------------------------------QCDLLGDEL 81 I + GA+ ++ + Sbjct: 118 IATVFGAELSLGVARPAPRRSARKAARGRGRAVRYAATPEFEHAAAPDSAPRTGEPDPPG 177 Query: 82 THLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEG-LILLSGGRMGDVG 140 HL VLA GY+ L+ I+ A+ D D L G +L+G R G + Sbjct: 178 PHLLVLARGQEGYRRLSREIAAAHLAAGEKGVLRYDIDALTAAAGGHWHILTGCRKGHLR 237 Query: 141 RSLLRG------NSALVDECVAFYEEHFP-DRYFLELIRTGRPDEESYLHAAVELAEARG 193 +L + + E F DR +EL G P ++ + LA+ G Sbjct: 238 TALADDLAAGETGLPRAEAALRDLVERFGADRVSVELTHHGVPADDERNALLIALADRVG 297 Query: 194 LPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADI 253 LPV+AT F AI +LD+ + ++RS EM LFA Sbjct: 298 LPVLATTGAHFAGPEQRRRAMALAAIRARRSLDEMAGWLAPAGGAHLRSGAEMARLFAAC 357 Query: 254 PEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTE-DYLVKRAKEGLEERLAFLFPDEE 312 P+A+AN V +++ C +RL LP F D E +L + G R + Sbjct: 358 PDAVANAVALSRECAFDLRLIAPQLPPFAVPDGHDENSWLRELVLRGAARRYGPPHAN-- 415 Query: 313 ERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAY 372 P +LE EL+VI +GFPGYFL+V + + + + NG+ GRGS A S V + Sbjct: 416 ------PPAYRQLEHELEVIATLGFPGYFLVVHDIVSFCERNGIL-CQGRGSAANSAVCF 468 Query: 373 ALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIIT 432 A+ IT++DP+ +LLFERFL+PER PD D+D ++R++ I+HV YGR+ +Q+ Sbjct: 469 AIGITNVDPVANELLFERFLSPERDGPPDIDIDIESDRREEAIQHVYARYGREYAAQVAN 528 Query: 433 FGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEVK 492 T K+ +RD + LG G D SK + G+ + + Sbjct: 529 VITYRGKSAVRDAAKALGFSPGQQDAWSKQVSRWTGVGAET-------------GTDIPE 575 Query: 493 ALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLV 552 ++ +A LEG+ R+ G H+GG+VI I D P+ V Q+DK D GLV Sbjct: 576 QVLRLAADLEGLPRHMGIHSGGMVICDRPIADVCPVEWARMAGRSVLQWDKDDCAAVGLV 635 Query: 553 KFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLE 612 KFD LGL L+ +++ ++++ + + + + L + ++ML R+++ VFQ+E Sbjct: 636 KFDMLGLGMLSALHYMIDLVREHEGVE----VRLHELDLKEPAVYEMLSRADSVGVFQVE 691 Query: 613 SRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHES 672 SR + RL+P F D++ VAL RPGP+Q G V +I R++G E ++Y H + Sbjct: 692 SRAQMATLPRLRPREFYDLVVEVALIRPGPIQGGSVHPYIRRRNGTEPVTY-----DHPA 746 Query: 673 LKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKK-PEEMAKQRSVFAEGA 731 L+ L T G+ L+QEQ+MQ+A ++G+T AD LRRAMG K+ PE M + + G Sbjct: 747 LENSLGRTLGVPLFQEQLMQMAVDVAGFTAAEADQLRRAMGSKRSPERMRRLKERLYRGM 806 Query: 732 EK-NGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTAD 790 + +GI E+A +I++ + FA +GF +SHS ++A + + + W K H+PA F A ++ A Sbjct: 807 AELHGITGEVADRIYEKLYAFANFGFPESHSQSFAALVFYSAWFKLHHPAAFCAGLLRAQ 866 Query: 791 MDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDG-EIVYGIGAIKGVGEGPIEAI 849 LV + R G+ + PD+N+ L + + G E+ G+ ++ +G E I Sbjct: 867 PMGFYSPQSLVADARRHGVPVHGPDVNASLAEATLENGGREVRLGLAGVRHIGSELAERI 926 Query: 850 IEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAA 909 + AR + G + + DL R + E L +GAFD + A ++ Sbjct: 927 VAARVEHGPYTSVLDLTGRVELTV---AQAEALATAGAFDSVTGP--------SGAERSG 975 Query: 910 DQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQY 969 + A A G A + + + G+ +P Sbjct: 976 GRRAALWAAGAAARERAHLLPGTGPAADAPALPGMSALELAAADVWATGISPGSYPTEFL 1035 Query: 970 LKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVM 1029 ++ +G + + G + G V + T G + L+D +G + V+ Sbjct: 1036 RARMDE-LGVIPAGRLLEVRDGSRVLVGGAVTHRQRPATAAG--VTFLNLEDETGMVNVV 1092 Query: 1030 LFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLA 1085 +Y+ L + L+V G+V + G + + A + + +R Sbjct: 1093 CSVGLWTRYRALAQSASALLVRGRVQ--NAEGAVSVVAEHLQLLSLGMGSRSRDFR 1146 >UniRef50_C4FWP2 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FWP2_9FIRM Length = 1116 Score = 1009 bits (2610), Expect = 0.0, Method: Composition-based stats. Identities = 343/1152 (29%), Positives = 560/1152 (48%), Gaps = 56/1152 (4%) Query: 9 LRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA 68 VHS S++ V+ A G L + D +L G + FY AG+K ++GA Sbjct: 3 FNVHSANSLLASTLTIPSYVEAAKERGYQILGLADVHSLQGALDFYNRCQAAGLKAMIGA 62 Query: 69 DFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEGL 128 + L ++ V A N GY LI + + P D+L + L Sbjct: 63 TIKLPGALKQTQVYPFLVYALNQAGY---YELIGLIRRLSHQPLSPGAIWDYLTQSCHNL 119 Query: 129 ILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHF-PDRYFLELIRTGRPDEESYLHAAVE 187 +S G +V ++L+ + E+ F P +L + P A Sbjct: 120 FYISCGHASEVEQTLIHSGDQEASLVLERLEQVFGPGNVYLGVAA--FPYNPVEGEALKA 177 Query: 188 LAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMC 247 A+A +P+V V ++ D + ++ AI TLD R Y ++ E Sbjct: 178 FAKAYQVPLVVGQGVSTLNQGDAFSLKVLEAIGANETLDVELRAMQGVHYVYNWADLEAQ 237 Query: 248 ELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKRAKEGLEERLAF 306 + + + L N+ ++A R V++ + FLP+FPT D +L + LE Sbjct: 238 YVRLGLADCLTNSRQLADRMQVSLPQNQAFLPKFPTPDHLPASQFLRDLTQSALE----- 292 Query: 307 LFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGA 366 + R Y +RL+ EL+VI+ MGF YFLIV + I + + + + VGPGRGS A Sbjct: 293 -----DLRPADLAVYQQRLDYELEVIDSMGFSDYFLIVWDIIVYCQSHAIRVGPGRGSAA 347 Query: 367 GSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDA 426 GSLV+Y L IT +DP++++LLFERFLNPER +MPD D+D KR QV+ +V + YG++ Sbjct: 348 GSLVSYLLGITRVDPIQYNLLFERFLNPERYNMPDIDMDIPDNKRQQVLHYVVERYGQEQ 407 Query: 427 VSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIYE 486 V+QI T GT A+A +RD RVLG + ++ IP + ++L +A++ L ++ Sbjct: 408 VAQIATLGTFGARAAMRDTLRVLGADSETLRVWARAIPKELDISLPQAYQKSAALRQLVS 467 Query: 487 ADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDV 546 E + L +A+ +EG+ R+ HA VVI + P+ +TQF DV Sbjct: 468 QSETNQQLFQVAQTIEGLPRHISTHAAAVVIHDQALDQVIPVVERPNQP-LMTQFTMYDV 526 Query: 547 EYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETT 606 E GL+K DFLGLR L +++ ++ + K +A DI AI ++D ++ + + ++T Sbjct: 527 EKVGLLKMDFLGLRNLNLLDTIIKQVQKSQA-----DFDIEAISMEDAQTLALFRAADTN 581 Query: 607 AVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDV 666 VFQ ES G+K ++++LQP+ FED++A+ ALFRPGP++ +D+++ R+HG+E Sbjct: 582 GVFQFESDGIKQVLRKLQPERFEDIVAVNALFRPGPMKQ--IDHYVARRHGKE-----SY 634 Query: 667 QWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSV 726 Q H L+ +L PTYGII+YQEQVMQ+ Q ++G++LG AD+LRRAMGKK+ + MA++R Sbjct: 635 QAIHPILEEILAPTYGIIVYQEQVMQVCQRMAGFSLGQADLLRRAMGKKQADVMAREREH 694 Query: 727 FAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAV 786 F GA + GI E+A +D + +FA YGFN+SH+ Y+ +++Q +LK HYP F A+ Sbjct: 695 FIRGAREQGIEPEIASATYDYIYEFASYGFNRSHAVVYSTLAFQLAYLKVHYPLAFYQAL 754 Query: 787 MTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPI 846 + N + + E R +L ++N F V+ ++ G+ AI+ + + Sbjct: 755 LNMGSSNQTTMADYILEAKRHTGPLLGLNLNESQIGFSVSGQ-QLQVGLSAIRTLRHDFV 813 Query: 847 EAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDAL 906 I+E R G + L R K L LE LI GAFD G +R L+ +L + Sbjct: 814 SHIVEDRQLLGPYTGLLHFMQRLPKKWLKHEWLESLISVGAFDYTGMNRPTLLKNLDKLM 873 Query: 907 KAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPI 966 ++ G ++E + W D E E LG L GHP+ Sbjct: 874 QSV------------TFSGGNLSLFPELEPRIEWVEDWNPSQKRDKEVEILGFSLEGHPV 921 Query: 967 NQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRL 1026 Y + + + ++D+ + + LV RV+ TK+ + L+D + Sbjct: 922 ATYQAFAKSHPNLLSVRDILAAQPNLKVQTLVLVKGIRVINTKKQELMAFLELEDEVASI 981 Query: 1027 EVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYA----- 1081 ++F + Y LL++ ++L+V G V D G ++ + + ++E K Sbjct: 982 SGVVFPQSYRHYVSLLKEGQVLLVEGTVELD-RQGRHQLIIKRLSPVNEQEAKAPNSPNE 1040 Query: 1082 ---RGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSP 1138 + + + Q L LR+ + + PV + + R + +RVS Sbjct: 1041 HPFQRCFVQVKAFQDLKPFLPGLRKFADQYSG---PVAMILVDGN-RQTFQLDDAYRVSY 1096 Query: 1139 SDRLLNDLRGLI 1150 + +L L+ Sbjct: 1097 GQKAQAELAKLL 1108 >UniRef50_C0GKP9 DNA polymerase III, alpha subunit n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GKP9_9FIRM Length = 1022 Score = 1007 bits (2604), Expect = 0.0, Method: Composition-based stats. Identities = 352/1072 (32%), Positives = 528/1072 (49%), Gaps = 56/1072 (5%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHLRV S+YS + G + LV +A LGMPA+A+ D+ L G V+F GIKPI Sbjct: 3 FVHLRVKSEYSFLRGACRLEDLVARARELGMPAIALVDYGVLHGAVRFTNLARQYGIKPI 62 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 +GA+F++ C L +L + TG+QNL L+++ +D W+ E Sbjct: 63 LGAEFSLPC------GLPLVLLVRDRTGWQNLVRLVNRVQLA--RPRSDTLDMGWIAEDA 114 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 185 GL + G+ RS + + + F +L L G P + Sbjct: 115 AGLTAVLPAGGGETVRS-----RQSYIQALEQLQPVFGCEVYLGLEDGGLPGTKRQNELV 169 Query: 186 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 245 ++AE + +P+VAT++V ++ D + + + I G L R Y+ + E Sbjct: 170 AKVAEGKNVPLVATHNVHYVLPGDDEVYRMVNCIRTGRPLAGAGRSFLPGAAYYLPAPAE 229 Query: 246 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF--PTGDMSTEDYLVKRAKEGLEER 303 M FA A NT+++AKRC + LP F E L + EG++ R Sbjct: 230 MHRRFAAFSGACENTLDLAKRCTFILEQEGMQLPAFLQQDCKEPAEAVLRRLCLEGMQRR 289 Query: 304 LAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRG 363 E RLE EL VI G YFLIV + + +++ + VGPGRG Sbjct: 290 -----------GLENAEAYRRLERELAVIIPKGLSAYFLIVHDLVSYARKQNISVGPGRG 338 Query: 364 SGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYG 423 S GSLVAY L I +DPL L FERFL+ +R PD D+D C +R++++ ++ D YG Sbjct: 339 SAGGSLVAYLLGIIQVDPLAHGLYFERFLSEDRSGFPDIDLDVCQRRREELLGYLRDRYG 398 Query: 424 RDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGM-TLAKAFEAEPQLP 482 + V+Q+ F T+ A+A +R+VG+VL + +++ +P G + A P+ Sbjct: 399 QGYVAQVSAFSTLGARAAVREVGKVLDMTGEKISTVAEALPYYAGRGGIEAAVGQYPEFM 458 Query: 483 EIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFD 542 DE+ ++ AR+LEG+ R+ HA GV+I + + PL G+ TQ+D Sbjct: 459 SAKLRDEDSGTVLAGARRLEGLCRHLSTHASGVIIGDGNLQEALPLCRGPAGEVL-TQWD 517 Query: 543 KSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQR 602 K DVE G +K D LG R LTI + AL + KR L IPLDD+ ++ ML+R Sbjct: 518 KDDVEEMGFLKIDVLGSRNLTIAHDALSWVRKRHGTT----LVAEEIPLDDEDTYAMLRR 573 Query: 603 SETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEIS 662 E+ FQLES GM+ +++RL P ED+I L++L+RPGP +SG+V++FI R+HGRE Sbjct: 574 GESLGCFQLESVGMRRVLRRLAPQRLEDLIHLLSLYRPGPWESGLVESFIARRHGRE--- 630 Query: 663 YPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAK 722 D+ H L +L TYG++LYQEQVMQ+A L GYT G AD LRR M ++ P Sbjct: 631 --DMSGVHPLLTGILAETYGVVLYQEQVMQVACELGGYTPGEADGLRREMSRRLPSLQEF 688 Query: 723 QRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEF 782 + F GA K G++ A +F + +FAGY FNK+HSAAYALVSY T +LK HYP EF Sbjct: 689 HQPKFVAGAVKRGLSRAEAEDVFTHLCRFAGYSFNKAHSAAYALVSYWTAYLKKHYPVEF 748 Query: 783 MAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVG 842 AA++++ V E G+ +LPP +N F + I + ++ +G Sbjct: 749 YAALLSS-GSGYYATAVYVREAAIRGVPVLPPHVNHSGLSFVPEKE-AIRSALPVVRDLG 806 Query: 843 EGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSL 902 EA + K G F L D C R L R L LI +GAF LG +R + SL Sbjct: 807 ARAAEA-LLEAQKKGPFMSLHDFCCRVGRSALRRSALVNLIKAGAFAGLGRNRRQALASL 865 Query: 903 GDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLT 962 LK GQ + ++ E E + + + V+ E ETLG+ L+ Sbjct: 866 DHVLKWT-----DRQPGQLSLLDLMPE-----ESAVPALPDFSWPEVVAAELETLGMALS 915 Query: 963 GHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDR 1022 HP+ Y K+++ V L ++ G +T AG V+ K+G + + D Sbjct: 916 DHPLACYKKQLQS-VSREPLCNLCNLPVGTKVTVAGTVMGRTRRRLKQGGVMLTLFISDE 974 Query: 1023 SGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDID 1074 SG E + + + L +++G+ + D G + +++ + Sbjct: 975 SGFAEAVFYPADYRRLLYRL-DAAAFVITGKTTAD----GDAVMVQDIRPLS 1021 >UniRef50_D1C6C8 DNA polymerase III, alpha subunit n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C6C8_SPHTD Length = 1095 Score = 1005 bits (2599), Expect = 0.0, Method: Composition-based stats. Identities = 334/1091 (30%), Positives = 534/1091 (48%), Gaps = 56/1091 (5%) Query: 3 EPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGI 62 E R+V L +H+ YS +DG + ++ +A+ LG ALAITD L G ++F A I Sbjct: 4 EHRYVELHLHTAYSFLDGASLPEEIIARASELGYRALAITDHDGLHGAMEFAQLARAADI 63 Query: 63 KPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLI 122 +PI GA+ + HLT+LA + TGY NL LI+ A+ G P +D D L Sbjct: 64 QPITGAELTLADGS------HLTLLAESVTGYGNLCRLITAAHHAGED-RVPRLDPDLLP 116 Query: 123 ELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRTGRPDEESY 181 EGLILL+G R G + R + G+ A + + Y E F + +EL + + Sbjct: 117 RHAEGLILLTGCRQGALARLVDAGDLAGAEGLLRRYVEWFGAENVVVELQQNLVYGDTRR 176 Query: 182 LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241 + VELAE GL AT +V + ++ VAI + TLD R R + + Y+R Sbjct: 177 VRLLVELAERLGLRYAATGNVHYHRPERHRLQDVLVAIRERTTLDGAHRARRANAEFYLR 236 Query: 242 SEEEMCELFADIPEALANTVEIAKRCN-VTVR-LGEYFLPQFPT-GDMSTEDYLVKRAKE 298 + EE+ LF P AL T+EIA+RC + Y P +PT + +D L + +E Sbjct: 237 AAEEVAVLFDRYPAALEATLEIAERCAGFDLTRDLAYRFPDYPTAPGETPDDLLARICRE 296 Query: 299 GLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDN---- 354 L ER + E I + G+FL+ + + +++ Sbjct: 297 ALAERYPEPERRAAAEARLAEELRL--------IARHRLAGFFLLYRDLLLLAQEVAAEV 348 Query: 355 ----------GVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDV 404 +P G GRGS S+V Y + ++ +DPL L RFLN + S+PD D+ Sbjct: 349 RGTDTPRAGGNLPPGRGRGSSVSSIVCYLIGLSHVDPLAHGLFLGRFLNEDLRSVPDIDL 408 Query: 405 DFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIP 464 DF + R+++IE V ++YG + + + F T ++ +RD+G+ LG P +D+I+KL Sbjct: 409 DFPRDIRERLIERVYEVYGPEHAALVCAFSTYKLRSAVRDIGKALGLPQPDIDKIAKLSE 468 Query: 465 PDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524 L + P+ +A ++ L+++A +L G R+ +H GG++++ + + + Sbjct: 469 ARSAKDLGEELARIPEFAARRDA-PPLRYLVELAEELAGFPRHVTQHVGGMIVSSSPLVE 527 Query: 525 FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584 P+ + Q+DK + A +K DFL L L+++ LE+I + G+PP+ Sbjct: 528 LVPIQPAAMPGRYLCQWDKDSCDDARFIKIDFLALGMLSLVEECLELIVRS----GKPPV 583 Query: 585 DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644 D++ I D +DM+ +T VFQ+ESR ++ R QP ED+I VA+ RPGP+ Sbjct: 584 DLSRIDFADPAVYDMICAGDTIGVFQIESRAQIQMLPRTQPRSLEDLIVQVAIVRPGPIV 643 Query: 645 SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704 V+ ++ + R +++ H SL+PVLE T G+ILYQEQV+++A VL+G+T G Sbjct: 644 GKAVNPYVQNRQRRMRNPRAPIRYDHPSLEPVLEETLGVILYQEQVLEVAMVLAGFTAGQ 703 Query: 705 ADMLRRAMGKKK-PEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAA 763 A+ LRRAM +K+ E M F +GA G+ E+A ++F + FA YGF KSHSAA Sbjct: 704 AEALRRAMSRKRSREAMLHFWRQFRDGALARGVRLEVAKEVFRKLLGFAEYGFPKSHSAA 763 Query: 764 YALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHF 823 +A+++YQ+ WL+ +YP EF A+ +V++ R G++ILPPD+N Sbjct: 764 FAVLAYQSAWLRCYYPTEFTCALFNNQPMGFYPPHVIVNDAKRHGVRILPPDVNQSGARC 823 Query: 824 HVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLI 883 V + + G G ++G+GE I R G +R L D R L R +E LI Sbjct: 824 TVEGN-AVRIGFGYVQGIGEDAALLIEREREANGPYRSLADFVRRVP---LAREAVENLI 879 Query: 884 MSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQP 943 + GAFD G R + LG + A A Q + +EQ +P Sbjct: 880 VVGAFDGFGLGRREALWQLGLFIPARGFGKNGAAGKQLPL-------ALPVEQDMVELRP 932 Query: 944 WPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAA 1003 + + +TLGL HP+ + V D+ G + AGLVV Sbjct: 933 MSAWEQMAADYDTLGLSPRYHPLGLLRPHLPEA--IVSTVDLAEIPDGTEVRVAGLVVCR 990 Query: 1004 RVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGL 1063 + T +G I L+D G + V+++ ++ + L+ + L+V G++ D G + Sbjct: 991 QRPGTAKG--ITFLLLEDERGLVNVIIYPALYEEQRLLVRGEPFLVVEGRLQRRD--GTI 1046 Query: 1064 KMTAREVMDID 1074 + A + +D Sbjct: 1047 NLVAHRLHTLD 1057 >UniRef50_C0YII7 DNA-directed DNA polymerase n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YII7_9FLAO Length = 1555 Score = 1005 bits (2598), Expect = 0.0, Method: Composition-based stats. Identities = 365/1072 (34%), Positives = 564/1072 (52%), Gaps = 101/1072 (9%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGA-------- 56 ++ + HS +S + + L+KKA+ PA+ + D N+ G KF A Sbjct: 247 KYFNFDNHSVFSTLTATSSINDLIKKASDENFPAVGMVDLGNMMGAFKFVSAVEGANADR 306 Query: 57 -------------GHGAG------------IKPIVGADFNVQCD--------LLGDELTH 83 G + P+VG +F + D T Sbjct: 307 AKKHKEYLAKKQEAEENGTEFNEEEPVSEPLIPVVGCEFYISDRYEQKQFTKDDPDRRTQ 366 Query: 84 LTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSL 143 + +LA + GY+NL L S + +G+ P + R+ + + EG+I L+ G MGD+ ++ Sbjct: 367 VVLLAKDFNGYKNLAKLSSIGFLKGFYFGVPRVSRELIAQYKEGVIALTSGIMGDIPDAI 426 Query: 144 LRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVR 203 L +E ++++ F D +++++ P+EE + LA+ + ++A N+ Sbjct: 427 LNTGEQKGEELFKWWKDTFEDDFYVQIQNHKLPEEEHLNEVLLYLADKYNVKILAQNETF 486 Query: 204 FIDSSDFDAHEIRVAIHDGFTLDDP------KRPRNYSPQQYMRSEEEMCELFADIPEAL 257 + + D + +I I DG L P KR + + Y++S +E+ E F P+A Sbjct: 487 YTNKDDANIQDIVSCIKDGEKLTTPIGKGFGKRRGLATGEYYIKSSDEIKEAFLAYPDAF 546 Query: 258 ANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTED-------------YLVKRAKEGLEERL 304 E + + LP+F + YL EG + R Sbjct: 547 DAYEEFTAKFKPYTLKRDVLLPKFDIPEEFIHAEDEVDGGKRGEMAYLTHLTYEGAKNRY 606 Query: 305 AFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGS 364 E ERL+ EL+VI G+PGYFLIV +F ++ GV VGPGRGS Sbjct: 607 GE--------EGITDEIKERLDFELEVIANTGYPGYFLIVQDFCNEARKMGVWVGPGRGS 658 Query: 365 GAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGR 424 AGS VAY + IT++DP+++DLLFERFLNPERVSMPD D+DF E RD+VI+ V + YG+ Sbjct: 659 AAGSAVAYCIGITNVDPIKYDLLFERFLNPERVSMPDIDIDFDDEGRDRVIKWVIEKYGQ 718 Query: 425 DAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPE- 483 V+QIIT+ + K+ I+D GRVL P + I+KLIP PGM +AKA +L Sbjct: 719 SQVAQIITYSVLGGKSAIKDAGRVLDVPIPDTNNIAKLIPSTPGMNIAKALAKYDKLKPE 778 Query: 484 -----------IYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCD- 531 + D+ ++ A+K+EG RN G HA GV+I P +++ P+ Sbjct: 779 EQMLVDEMRYVLESPDDSRHGVLASAKKMEGCIRNTGIHACGVIITPEDVSNLVPVTIAA 838 Query: 532 EEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPL 591 ++ V+QFD S E AGL+K DFLGLRTLTII AL+++ R + +D IPL Sbjct: 839 KDADILVSQFDNSVAESAGLLKMDFLGLRTLTIIKDALKLVKARHGVD----IDPDLIPL 894 Query: 592 DDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNF 651 DD K++ + + T +FQ ES GM+ ++ L+P F D+IA+ AL+RPGP++ + NF Sbjct: 895 DDAKTYQLFKEGRTVGIFQYESPGMQKYMRELKPTVFADLIAMNALYRPGPIK--YIPNF 952 Query: 652 IDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRA 711 I+RKHG EEI Y + L+ TYGI +YQEQVM ++Q L+ +T G AD LR+A Sbjct: 953 INRKHGIEEIVYDL-----PETEEYLKETYGITVYQEQVMLLSQKLANFTKGEADTLRKA 1007 Query: 712 MGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQT 771 MGKK+ + + K F EG KN +N E KI++ + FA Y FNKSHS YA ++YQT Sbjct: 1008 MGKKQIDVLNKMYPKFIEGGRKNNLNEERLEKIWNDWKAFAEYAFNKSHSTCYAFIAYQT 1067 Query: 772 LWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEI 831 +LKA+YPAE+MA+VM+ +++NT+ + +++C MG+ +L PD+N Y F VN+ G+I Sbjct: 1068 AYLKANYPAEYMASVMSNNINNTDSITMFMEDCKSMGVDVLGPDVNESQYKFSVNEKGQI 1127 Query: 832 VYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRL 891 +G+GAIKG+GEGP EAI R + G F+ ++D R ++N+RV E L+++GAFD L Sbjct: 1128 RFGLGAIKGIGEGPSEAITRER-ENGRFKNIYDFFERILPSQMNKRVAESLVLAGAFDEL 1186 Query: 892 GP-HRAALMN-------SLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQP 943 HR + +L ++ +++ + +F AEE + + A C Sbjct: 1187 DSFHRGQYFDIDMAGKTNLERLIRYGQSFQESKNEMEHSLFADFAEEVQIEQPKLAPCPE 1246 Query: 944 WPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVIT 995 WP L+ E+E +G YL+ HP++++ + + G + K + + + Sbjct: 1247 WPNMHKLNKEKEIIGFYLSAHPLDEFKYQFQFMQGQLSKKAVLEKNEEEKVV 1298 Score = 87.2 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 74/169 (43%), Gaps = 4/169 (2%) Query: 983 KDMHPTERGKVITAAGLVVAARVMVT-KRGNRIGICTLDDRSGRLEVMLFTDALDKYQQL 1041 K+ GK T AGL+ RV + G ++ TL+D SG L + ++ Sbjct: 1381 KERENGGGGKEYTVAGLITEYRVQDGFRSGEKVAFVTLEDYSGSYSFRLGDRDYMRLKEK 1440 Query: 1042 LEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRL 1101 LE R +I + G + + +V+++ EA E++A+ +++ + + + L+ Sbjct: 1441 LEVQRFVIFKIKF-AQVKDGRVFVNVVDVIELQEAFERFAKSISLVMDVMDVRPEDLDFF 1499 Query: 1102 RQSLEPHRSGTIPVHLYYQRADARARLRF-GATWRVSPSDRLLNDLRGL 1149 R L+ ++ G + + + + + + V + L+ +++ L Sbjct: 1500 RTVLDRNK-GNQKLKFFIKNLEDDSHIEVQSMKHSVDLNGDLIKEIQLL 1547 >UniRef50_A8YV21 DNA polymerase III alpha subunit n=5 Tax=Lactobacillus RepID=A8YV21_LACH4 Length = 1035 Score = 1002 bits (2591), Expect = 0.0, Method: Composition-based stats. Identities = 343/1061 (32%), Positives = 538/1061 (50%), Gaps = 50/1061 (4%) Query: 9 LRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA 68 L+ S ++++D K + L++ A G A+ + D GLV FY AGIKP++G Sbjct: 6 LQNLSSFTLLDSPTKVSDLIETAKKRGYQAVGLADVNVTYGLVNFYELAKKAGIKPLLGM 65 Query: 69 DFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAY-QRGYGAAGPIIDRDWLIELNEG 127 + + + L A N GY NL L S G ++ L + Sbjct: 66 QLRLNGLVDSTQKYDLIAFAKTNAGYHNLLRLSSAINFLTDNGQNNNVLTLKDLSKYLAD 125 Query: 128 LILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVE 187 L+L+ SL N L + + +E D L L P ++Y+ Sbjct: 126 LLLIVPANTKSELLSLFETNKQLGSDLIRDLKELTSD---LYLGVYANPSMQNYIDYVRS 182 Query: 188 LAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMC 247 L++ L ++AT D +++ D + AI G + D Y+ E++ Sbjct: 183 LSKQFDLLLLATEDSEYLNPHDQFLQKTLRAIATGDKIQDALPLAKQEGSHYLVEAEQLL 242 Query: 248 ELFA--DIPEALANTVEIAKRCNVTVRLGEYFLPQF-PTGDMSTEDYLVKRAKEGLEERL 304 + + D+ +A+ NT ++A++CN V + LP++ +++E+YL A+ GL++R Sbjct: 243 QRYHEFDLDDAVNNTWQVAEKCNAEVVFQKPVLPKYHQKKFVTSEEYLHYLAQTGLQQRF 302 Query: 305 AFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGS 364 K EY +RL EL+VINQMGF YFLIV + I + + GPGRGS Sbjct: 303 GQN--------KIPAEYQKRLNYELRVINQMGFDDYFLIVWDVINYCHRVQITTGPGRGS 354 Query: 365 GAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGR 424 GSLV+Y+L+IT++DP+E++LLFERFLNP R MPD D+D +RD VI+++ YG Sbjct: 355 ACGSLVSYSLRITEVDPIEYNLLFERFLNPSRHEMPDIDLDIPDVQRDTVIKYMYQKYGM 414 Query: 425 DAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG-MTLAKAFEAEPQLPE 483 D +QI+TFGT+AAK +RDVGRV G + + + IP G +TL +A++ +L Sbjct: 415 DHAAQILTFGTLAAKQALRDVGRVFGLTMVEIKKWADAIPYSKGKITLKEAYQQSRELRL 474 Query: 484 IYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDK 543 + +A E K L A LEG+ R+ HA G+VI+ I + L G PVTQ K Sbjct: 475 LVDATPENKLLFKTALGLEGLPRHYSIHAAGLVISDNSIAGISGLQAGPLG-IPVTQQTK 533 Query: 544 SDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRS 603 VE GL+K DFLGLR LT++ L +I ++ +D IPL+D ++ + Q+ Sbjct: 534 KYVESLGLLKIDFLGLRNLTVLGNILNLIRQQG-----IKIDPNQIPLNDAQTLQLFQQG 588 Query: 604 ETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISY 663 +T AVFQ ES G++ ++++L PD FED++A+ AL+RPGP+Q +D F+ RK+G+E + Y Sbjct: 589 KTDAVFQFESGGIRQVLRKLHPDNFEDLVAVNALYRPGPMQ--NIDAFVRRKNGQEAVRY 646 Query: 664 PDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQ 723 PD SLK +L+PTYGI++YQEQVMQ AQ+L+G++LG AD+LRRAM KKK + + ++ Sbjct: 647 PD-----PSLKKILQPTYGILVYQEQVMQTAQILAGFSLGEADILRRAMSKKKQDVIEQE 701 Query: 724 RSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFM 783 + F G K G +A +++ +E+FA YGFN+SH+ AY ++Y +LK HYPA F Sbjct: 702 KGKFIAGTIKQGHTKAVAERVYQYIEQFANYGFNRSHAVAYTKIAYWLAYLKVHYPAAFY 761 Query: 784 AAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGE 843 A++ + K + + +KILPPDIN + + + +I+ G+ AIKG+ Sbjct: 762 TAMLNSAAGA--KAQDYIMQAQEANIKILPPDINHSSLEYAL-KNKQILVGLKAIKGLRV 818 Query: 844 GPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLG 903 I + ++ L D R D K L ++ LIM+GAFD L +R L+ + Sbjct: 819 DFAREIAD---NTKPYKSLNDFLRRIDPKFLQADAIKALIMAGAFDGLEKNRNELLVNCD 875 Query: 904 DALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTG 963 + + + ++ E + LG T Sbjct: 876 EIIANVQLTGQN-----------ISLSEILGNAPLKPADEPTGAEKAAMEEKVLGFSTTT 924 Query: 964 HPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRS 1023 P+ K +++ L E G + G ++ + + TK G + + D S Sbjct: 925 SPLIAVQKFAQKF-NSRPLNQFQLNESGVGV---GKLIRFKQIRTKNGKNMAFASFADTS 980 Query: 1024 GRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLK 1064 G EV++F +K+ L+ I ++ +V D F K Sbjct: 981 GEQEVVIFPRIYEKFGTELKVGDIYLLGLRVQGDRFDQNKK 1021 >UniRef50_B1HX19 DNA polymerase III subunit alpha n=2 Tax=Bacillaceae RepID=B1HX19_LYSSC Length = 1020 Score = 1000 bits (2585), Expect = 0.0, Method: Composition-based stats. Identities = 370/1061 (34%), Positives = 550/1061 (51%), Gaps = 56/1061 (5%) Query: 11 VHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADF 70 +H+ ++ + L+ A AI + L GL+ F A A I ++G Sbjct: 1 MHTSADLLKSTIRLEQLIPFLLEQKTQACAIVNTK-LYGLLPFCKAMQQAKIHAVMGLSV 59 Query: 71 NVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEGLIL 130 NVQ D L + A + GYQ L + S A R G ++ WL G + Sbjct: 60 NVQ---WHDTTLPLVLYAQSQEGYQQLLKISSAASIREDG----VLPWKWLEGYAAGCLA 112 Query: 131 LSGGRMGDVGRSLLRGNSALVDEC---VAFYEEHFPDRYFLELIRTGRPDEESYLHAAVE 187 L L + A + + V+ F +++ + R G + VE Sbjct: 113 L-----------LSSDDLAELKDWHGVVSALAHLFQHHFYMGITRPGGVALANENE-LVE 160 Query: 188 LAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM-RSEEEM 246 E + +P+VA F+ D A+E+ AI G L D Q Y + +E Sbjct: 161 WCEGQRIPLVAVQSCYFLRPEDHFAYEVARAIDTGDKLGDT--MLTAKLQGYFAPTAQEW 218 Query: 247 CELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTG-DMSTEDYLVKRAKEGLEERLA 305 F D PE L ++ C + +P+FP + E LVK A GLEER Sbjct: 219 QSWFTDRPEWLETCGQMLASCRAIIPEMSVQMPKFPVPVGETAESLLVKEAFSGLEERFN 278 Query: 306 FLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSG 365 L Y ERL EL++I MGF YFL+V +F++++KDN + GPGRGS Sbjct: 279 QLDIPYG--------YRERLRYELEIICSMGFADYFLVVADFMRFAKDNRILTGPGRGSS 330 Query: 366 AGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRD 425 AGSLVAY+L IT +DPL + LLFERFLNPER+S+PD D+DF KR QVI++VA YG+ Sbjct: 331 AGSLVAYSLAITQVDPLAYGLLFERFLNPERISLPDIDIDFVDSKRHQVIQYVAQKYGKG 390 Query: 426 AVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIY 485 V+QIITFGT++AKAV RDV RV G +++ISK+IP PG+TL KA E L E Sbjct: 391 NVAQIITFGTLSAKAVARDVARVFGFGAEVLEKISKMIPNKPGITLQKALEESYDLQEWL 450 Query: 486 EADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSD 545 D + + ++A+KLEG+ RN+ HA G+VIAP+ + + P+ D TQ+ D Sbjct: 451 SEDHQHQRWFEVAQKLEGLPRNSSTHAAGIVIAPSSLVNTVPIE-DGHEGIYCTQWPMGD 509 Query: 546 VEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSET 605 VE +GLVK DFLGLR LTI+ E I K G P +D IP+ D+K+F +LQ +T Sbjct: 510 VEASGLVKMDFLGLRNLTIL----EQIRWSIYKAGGPWIDFERIPMHDEKTFQLLQSGDT 565 Query: 606 TAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPD 665 + +FQLES GMK ++ + P F D++A+ AL+RPGP++ + + RK G+E + P Sbjct: 566 SGIFQLESEGMKQALRDIHPTQFLDIVAVNALYRPGPME--FIPVYARRKAGKELVVMP- 622 Query: 666 VQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRS 725 H L+P+L+ T+G+I+YQEQ+++IA VL+G+++G AD+LRRA+ KK + + +Q+ Sbjct: 623 ----HPVLEPILQETFGVIVYQEQIIKIASVLAGFSMGQADLLRRAVSKKNRQVLEEQQV 678 Query: 726 VFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAA 785 F +GA K G + +A ++++L+ +FA YGF KSH+ AY+++SYQ +LKAH+P F AA Sbjct: 679 TFVQGALKQGYDQHVATEVYELIVRFADYGFPKSHAVAYSIISYQMAYLKAHFPQSFYAA 738 Query: 786 VMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGP 845 +++ N +K+ LV E G+ PP + +F V +G I Y + IKGV Sbjct: 739 LLSNATGNVDKIQQLVQEAKDKGIPFYPPSLKDSTKYFTVEQEG-IRYSLAGIKGVPHTF 797 Query: 846 IEAIIEARNKG-GYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGD 904 IE+I R LFDL + +V+E LI +GA D L RA L+ ++ Sbjct: 798 IESINTLRQTNPQALYNLFDLAVALSAQHFKPKVIESLIYAGALDYLEKDRAVLIMTIDA 857 Query: 905 ALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGH 964 ALK A+ E I + A E + Y P++ L E+E+LG Y++ H Sbjct: 858 ALKHAELLRPNEDIDIST-----ATEFNFGKPKYMQVDDMPQKEKLIHEKESLGFYISAH 912 Query: 965 PINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSG 1024 P+ Q +++ G + G++ + + TK+G ++ L D G Sbjct: 913 PVTQERPYWADV--NCTSRELKQMRDGTYVKMIGVMEEVKKIRTKKGEQMAFVQLQDEHG 970 Query: 1025 RLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKM 1065 + LF Q LL +D IL+V G + +K+ Sbjct: 971 SVSATLFPQVFQFVQDLLVEDEILVVEGNLERRFGKPQIKV 1011 >UniRef50_Q5WEF1 DNA polymerase III alpha subunit DnaE n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WEF1_BACSK Length = 1095 Score = 999 bits (2582), Expect = 0.0, Method: Composition-based stats. Identities = 371/1154 (32%), Positives = 589/1154 (51%), Gaps = 70/1154 (6%) Query: 10 RVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGAD 69 V+S+YS++ + LV+ A G AL++TD L G V F+ + AG+KP++G + Sbjct: 7 NVYSEYSLLQSTNRVDELVQAAKEAGYTALSLTDRHVLYGAVPFFQSCRKAGLKPLLGLE 66 Query: 70 FNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEGLI 129 V+ D +E+ + ++A N GY+ L + G+ I+ + + Sbjct: 67 VTVRLD---EEIIPVRMVAKNEEGYRQLVAHSTSL---GFQTKQAAIELETWKANSTACF 120 Query: 130 LLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELA 189 + A + F+E + G + H ++ A Sbjct: 121 VFIPKEA----------FVAAKGNWLHFWERLAGG-LEAFIELAGGESD----HELIQFA 165 Query: 190 EARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCEL 249 A +P VA RF+ D +++ AI G T + + + ++ + + E Sbjct: 166 NAHQIPCVAAPPTRFLRKEDAPVYQLVRAIGAGTTTTHLELEEGWQ-RWHLPTANSLKER 224 Query: 250 FADIPEALANTVEIAKRCNVTVRLGEYFLPQFP-TGDMSTEDYLVKRAKEGLEERLAFLF 308 F +AL +A++ + + +P + + L ++GL+ R Sbjct: 225 FP--EKALLQARALAEKVEPYLPEEKPRIPAYDGLTVEQADKRLETLCQQGLKARYK--- 279 Query: 309 PDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGS 368 E + RLE EL +I + G+ YFLIV +F+ ++K +G+ GPGRGS A S Sbjct: 280 -------AVSVEAERRLEHELAIIAERGYSSYFLIVADFVGYAKKSGILTGPGRGSSASS 332 Query: 369 LVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVS 428 +VAY L ITD+DPL DLLFERFLNPER S+PD DVDF +RD+VI +V + +G D V+ Sbjct: 333 IVAYTLFITDVDPLAHDLLFERFLNPERASLPDIDVDFPDYRRDEVIAYVRERFGHDRVA 392 Query: 429 QIITFGTMAAKAVIRDVGRVLGHPYGFVDRISK-LIPPDPGMTLAKAFEAEPQLPEIYEA 487 Q++TFGT AA+A IRDVG+ L + FVDR++K LIP +L +A E + Sbjct: 393 QVLTFGTFAARAAIRDVGKALSIRHTFVDRVAKSLIPASL--SLNEAQEKGV-FKGL--E 447 Query: 488 DEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVE 547 E+ L+ A+++EG+ R+A HA GV+I+ + + L +G H VTQ D + Sbjct: 448 SPELDELLFFAKQIEGLPRHASTHAAGVIISDKPLNNKTALQLGIDG-HAVTQADMDSLA 506 Query: 548 YAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTA 607 GLVKFDFLGLR LT++ L++I + L++ IPL+DK +F +LQ+ ++T Sbjct: 507 RLGLVKFDFLGLRNLTLLERMLKVIEQEEGVA----LNLQHIPLNDKATFQLLQQGKSTG 562 Query: 608 VFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQ 667 +FQLES GM+ ++K+LQP FED++A AL+RPGP+ + +I KHG + P Sbjct: 563 IFQLESAGMRQVLKQLQPSQFEDIVATSALYRPGPMA--FIPEYIRGKHGHTQAIVP--- 617 Query: 668 WQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVF 727 HESL+P++EPT+G+++YQEQ+MQ+ Q + Y+L AD+ RRA+ KK+ + + ++R F Sbjct: 618 --HESLRPIVEPTFGVLVYQEQIMQVVQATANYSLAEADLFRRAISKKQHDVIIQERHQF 675 Query: 728 AEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVM 787 A +NG E A IF L+E+FA YGF KSH+ AY+ +SY +L+ H+PA F AA+ Sbjct: 676 IHRAVENGFLPEEAEAIFSLIERFANYGFPKSHATAYSFISYWLAYLRVHFPAAFFAALF 735 Query: 788 TADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIE 847 ++ N EK+ ++E + G+++LPP + F + +G+I +G+ I GV + Sbjct: 736 SSVWQNHEKLYSYINEAKKEGIRVLPPSVCKSGLLFELE-NGQIRFGLLPISGVNVQAVN 794 Query: 848 AIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALK 907 II R K LF A + +N+RV+E LI +GA D G RA L+ +L A Sbjct: 795 EIISKRRKNSD-SNLFMFYAHVASTAVNKRVMEALIKAGALDEFGQSRATLLGNLDKAEA 853 Query: 908 AADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPIN 967 +Q +A +F + +Y P + L+GERE LG YL+GHPI Sbjct: 854 FVEQVRSFKASS-GGLFTIKPAV-----PAYLDVTPSTKMEDLEGEREVLGFYLSGHPIE 907 Query: 968 QYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLE 1027 E+ER R+ K + AG+V+ + +VTK+G + TL D SG Sbjct: 908 N---ELERLAPFGRIPLAECIPSRKPVRIAGMVIDVKKIVTKKGEAMAFLTLSDESGECS 964 Query: 1028 VMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD-IDEAREKYARGLAI 1086 + F A Y+ L ++ + G + + G + + D + + K + L I Sbjct: 965 CVAFPQAWKVYEGLFAPHALVFLEGVLE--ERQGKTQFIIHKAADVLQLNKNKKKQTLYI 1022 Query: 1087 SLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDL 1146 LT + L+ L+ L G+ V LY ++ AR R + V+P+ + L L Sbjct: 1023 RLTADKDQPTRLSDLKYVLSQD-VGSTQVILYREKEQART--RLADEYSVAPTRKTLQLL 1079 Query: 1147 RGLIGSEQVELEFD 1160 + + G E + L+ D Sbjct: 1080 KQMFGEENIVLKSD 1093 >UniRef50_C8WVC5 DNA polymerase III, alpha subunit n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WVC5_ALIAD Length = 1039 Score = 997 bits (2577), Expect = 0.0, Method: Composition-based stats. Identities = 349/1075 (32%), Positives = 538/1075 (50%), Gaps = 45/1075 (4%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 FVHL HS YS +DG + LV +AAA GMPALA+TD + G +F+ G+KPI Sbjct: 2 FVHLHCHSPYSFLDGASSIEALVAQAAAQGMPALALTDRNTIAGQPEFHRLAAAYGVKPI 61 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 GA+ + ++ + L VLA + TG+++L L+++ + A P + L E + Sbjct: 62 AGAELTM------EDGSQLVVLAEHATGFRHLCELLTRMHVDARDRADPRLREADLFERS 115 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 185 EGL++LSGG G V R+L R V Y F DR++LE G P + Sbjct: 116 EGLLILSGGLRGFVQRALARRAYGDARRFVERYRNVFGDRFYLEWTADGLPGCARRMRDL 175 Query: 186 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 245 ++LAEA G+P VA +VR + H++ I G L P R ++ Y+ E E Sbjct: 176 LDLAEATGVPAVAATEVRAASPEEVAVHDVLTCIRVGCDLQTPHPERPFNRLGYLHDEAE 235 Query: 246 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTE-DYLVKRAKEGLEERL 304 FA P A+A TVEIA+RC+ P++ + L + +G +R Sbjct: 236 AMRRFAQDPRAMARTVEIAERCSPVFPAEGPLFPEYRDASGRGGVELLEQLVWQGARKRY 295 Query: 305 AFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGS 364 + P E RLE E +I +G+ YFL+V + +++++ G+ GRGS Sbjct: 296 GKVSP----------ELQMRLEHEFAIIRDLGYADYFLVVWDIVRYARSRGIR-CAGRGS 344 Query: 365 GAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGR 424 A S+VAY L +TD+D L +LLFERFL+ ER PD D+DF ++RD+VI++V YGR Sbjct: 345 AADSVVAYCLYLTDVDALNRNLLFERFLSRERAERPDIDIDFASDRRDEVIDYVYRRYGR 404 Query: 425 DAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMT-LAKAFEAEPQLPE 483 D V+++ T+ T A++ +R+VGRV G P +D+++K IP + +A E P+L + Sbjct: 405 DRVARVATYQTFRARSAVREVGRVFGIPEELLDQLAKRIPWSTHADEIEEALERVPELRD 464 Query: 484 IYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDK 543 + ++ ++R++ G R G H GG+VI+ + L G +T +DK Sbjct: 465 FQPYRRAFQWMLAVSRQIAGFPRYFGTHTGGIVISGEPLMKVTSLQPSASG-WLITPYDK 523 Query: 544 SDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRS 603 +E GLVK D L LRT+ + AL + R +D IP+DD+ +F ++R Sbjct: 524 RLLEDVGLVKLDLLSLRTMAAVEGALRLGTAR-------AVDYDHIPMDDEATFASIRRG 576 Query: 604 ETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISY 663 +T VFQLES + L RL + ED++A VAL RPGP+Q MVD F+ R+ G E +SY Sbjct: 577 DTIGVFQLESPAQRALQVRLGAESLEDLVASVALIRPGPIQGNMVDPFLARRRGLEPVSY 636 Query: 664 PDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK-KKPEEMAK 722 H L+P+L TYG++L+QEQV++IA ++G+T G AD LRR M + EM + Sbjct: 637 -----LHPKLEPILGKTYGVVLFQEQVIEIATAIAGFTPGEADELRRVMSHARSRAEMEQ 691 Query: 723 QRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEF 782 F + A + G+ E A +F V +A YGF ++H+AA+A +Y+T +L H+PA F Sbjct: 692 IGERFVQKAVRQGVPLETAKTLFSYVRGYASYGFCEAHAAAFATTAYKTAYLIEHHPASF 751 Query: 783 MAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVG 842 AAV+ + E R G++ILP DIN + V + I G I+ Sbjct: 752 FAAVLNQLPMGYYPAHVICAEARRRGVRILPVDINESEWDAGVPEPDAIRLGFRLIRSFS 811 Query: 843 EGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRL-GPHRAALMNS 901 E A++E R G FR L D R + + E+LI +GAFDR+ R L+ Sbjct: 812 ERVARALVEERQAFGSFRSLADAVMRLP--QADALHFERLIRAGAFDRVESRDRRELLWQ 869 Query: 902 LGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYL 961 L L K +A+ D + + I S P + E LG+ + Sbjct: 870 LPRWLA----LRKEKALALFDTISAPSPAEDAIRLP-QSMPPMSLAERIADEYSVLGVGV 924 Query: 962 TGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDD 1021 +GH ++ Y + + R G L + G + AGL + TK G + TL+D Sbjct: 925 SGHWLSLYREAL-RNEGYCTLAEAGEKREGARVKVAGLSIRPHRPPTKSGKTVVFFTLED 983 Query: 1022 RSGRLEVMLFTDALDKYQQLLEK--DRILIVSGQVSFDDFSGGLKMTAREVMDID 1074 +G + ++F + +L R++ +SG + G ++ + + Sbjct: 984 ETGIADAVMFETVYRREGAVLFTPFGRLIGLSGVIERRGGLKG-QIRVEHIWTLA 1037 >UniRef50_C3RN28 DNA polymerase III dnaE (Fragment) n=3 Tax=Bacteria RepID=C3RN28_9MOLU Length = 977 Score = 995 bits (2574), Expect = 0.0, Method: Composition-based stats. Identities = 351/1027 (34%), Positives = 559/1027 (54%), Gaps = 56/1027 (5%) Query: 8 HLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVG 67 HL+V+S YS + LVKKA+ L ALA+TD N+ G ++ GIK + G Sbjct: 4 HLQVYSSYSFQNSTILIEDLVKKASDLHYEALALTDKDNMYGAMELAKYAKKYGIKAVFG 63 Query: 68 ADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEG 127 + +V+ + E+ L +LA + TGY +L + S+ G I + L E Sbjct: 64 LEASVEINH---EIYPLLLLARDVTGYFDLVKITSEICLSERG----AISLEALSLYREH 116 Query: 128 LILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVE 187 L ++S + G + R +L+ + + + ++ F + +++ L G ++ V Sbjct: 117 LFVISACKEGIIERLILKELDSEALKYLELFKNTF-NNFYVGLQNHGIAMQQKLNERLVA 175 Query: 188 LAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMC 247 LA + +P+ TN+VR+++ + ++ A G LD + + Q Y++S EM Sbjct: 176 LATLQNIPICVTNEVRYLNKDEAFTLDLLQASAKGMMLDLEHQV--QTDQLYLKSSFEME 233 Query: 248 ELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTG-DMSTEDYLVKRAKEGLEERLAF 306 LF + + NT +I + CNVT+ + LP++P D DYL + GL++R Sbjct: 234 SLFDK--KYIENTNDIIRLCNVTIPTDQMHLPKYPVPKDGDAGDYLRQLCLVGLKKRFKG 291 Query: 307 LFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGA 366 EY ERL+ EL VIN+MGF YFLIV ++++++K + + VGPGRGS A Sbjct: 292 --------KNIPNEYIERLKKELTVINKMGFNDYFLIVFDYVRYAKMHKILVGPGRGSAA 343 Query: 367 GSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDA 426 GSLVAY L IT +DPL +DLLFERFLN ER+SMPD D+DF ++RD+V+ +V + YG + Sbjct: 344 GSLVAYVLGITGVDPLRYDLLFERFLNEERISMPDIDIDFQDDRRDEVVNYVTEKYGHEH 403 Query: 427 VSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAEPQLPEI 484 V+QI+TF T K I+D+G+VLG P ++ ++K IP + + + FE + Sbjct: 404 VAQIVTFSTYGPKVAIKDLGKVLGVPLPRLELLTKNIPTNYKNRKSAREVFETSYSFQSM 463 Query: 485 YEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKS 544 D ++ ++ +E + RN HA GVV++ + PL VTQ+ K Sbjct: 464 VNKDPALRKIMPAVFIVEKLPRNISTHAAGVVLSNDVLDQVVPLVRGPNNG-VVTQYSKD 522 Query: 545 DVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSE 604 +E GL+K DFLGL+ LTII++ ++ I K + ++I I L DKK+++M+ R + Sbjct: 523 YIEEVGLLKMDFLGLKNLTIIDYIIKDIAKNH----QVEININDIDLQDKKTYEMISRGD 578 Query: 605 TTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYP 664 T +FQLES GMK+L+ ++Q DC +D+IA +ALFRPGP+ + ++I RK G+E I+YP Sbjct: 579 TFGIFQLESSGMKNLLVKMQCDCLDDVIAAIALFRPGPMA--NIPSYIARKKGKEPITYP 636 Query: 665 DVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQR 724 E LKP+L+ TYGI+LYQEQ+MQ AQ+++G++L AD+LR+AM KK M + Sbjct: 637 L-----ECLKPILKSTYGILLYQEQIMQAAQLVAGFSLAKADILRKAMSKKTASLMKAMK 691 Query: 725 SVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMA 784 S F +G NG + A+K+F+L+E+FA YGFNKSHS Y ++Y +LKA++P EF + Sbjct: 692 SEFIQGGIANGFSELEAVKVFELIERFANYGFNKSHSVVYGYIAYWLAYLKANFPLEFFS 751 Query: 785 AVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEG 844 A+++ + + + + E + G+K+L P IN F V DG I Y + AIK VG Sbjct: 752 ALLSNEQSSDASKLSCIQEGKKYGVKLLAPSINYSTDRFKVE-DGNIRYSLLAIKNVGYA 810 Query: 845 PIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGD 904 +AI R G F+++FD +R ++ KLN ++L+ LIM+GAFD +R + +L Sbjct: 811 GYKAIEAERQ-NGTFKDIFDFVSRMESSKLNSKMLDSLIMAGAFDEFKLNRTTIKQNLHK 869 Query: 905 ALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGH 964 ++ A+ E + VL+ E+ LG+YLT H Sbjct: 870 IMEYAELKN----------------SIGIDEPPILTIVRDNRIKVLEEEKMVLGVYLTMH 913 Query: 965 PINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSG 1024 PI ++ V L ++ + + + +V+V K+G + D +G Sbjct: 914 PIALIKNNLKEQ--IVNLNELSN-YIDQPVRVIMALSRVKVIVDKKGQEMCFVDGYDETG 970 Query: 1025 RLEVMLF 1031 ++ ++F Sbjct: 971 EVDAVVF 977 >UniRef50_Q1IJA3 DNA polymerase III, alpha subunit n=4 Tax=Bacteria RepID=Q1IJA3_ACIBL Length = 1070 Score = 994 bits (2571), Expect = 0.0, Method: Composition-based stats. Identities = 287/1094 (26%), Positives = 526/1094 (48%), Gaps = 59/1094 (5%) Query: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61 ++ +++ L +S +S + G + L+ +A L PA+A+ D + G +F+ A G Sbjct: 3 AQNQYIELHANSAFSFLRGASLPETLIFRAQQLEYPAMALMDGNGVYGSARFHLAAKPNG 62 Query: 62 IKPIVGADFNVQC------------DLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109 ++ VG++ V+ E L +L + GYQNL ++++ R Sbjct: 63 VRAHVGSEIAVRDLGERMAPAAWLPHQWPAEPVRLPLLCESREGYQNLCRMVTRLKMREP 122 Query: 110 GAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFL 168 A + E GL+ L+GG G + +L RG + V F + F+ Sbjct: 123 SKAEGAAVMADVEEFARGLVCLTGGDEGPLASALARGGEPEGHKTVEHLVRMFGRENVFV 182 Query: 169 ELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228 EL R G ++E AAV +A + LP++ATN VR+ D + + ++ AI L D Sbjct: 183 ELQRHGLREQEWRNQAAVRIARSLQLPILATNGVRYADEPEREIADLFTAIRHHVALKDA 242 Query: 229 KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMST 288 R + +Y+R EM LF D+PEA+ANT E+++R + Y P +PT D + Sbjct: 243 GRLLAQNSCRYLRPTAEMARLFRDLPEAVANTWELSQRLTFELDDLGYQFPIYPTPDGES 302 Query: 289 -EDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347 + +L KR +EG+ +R + +++ EL +I ++G GYFLIV + Sbjct: 303 MDSFLEKRVQEGVIKRYG-----AKNEPDLYARAQKQVARELALIKKLGLAGYFLIVWDI 357 Query: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF- 406 I++ + N + V GRGS A S V YAL+IT +DP+ +LLFERFL+ R PD D+D Sbjct: 358 IRFCQQNDILV-QGRGSAANSAVCYALEITAVDPVGMELLFERFLSEARGEWPDIDLDLP 416 Query: 407 CMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPD 466 +KR+Q I++V YG + T K+ R+VG+ LG +++++KL+ Sbjct: 417 SGDKREQAIQYVYTRYGHLGAAMTANVITYRGKSAAREVGKALGFDVETLNKLTKLVSTW 476 Query: 467 PGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 E + + + +D+ +++ + R+ G+H+GG+VI ++ Sbjct: 477 EWRGPNDTLENQFESAGFEAKHPHIAKYLDLCSRIQDLPRHLGQHSGGMVICQGQLDSVV 536 Query: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586 P+ V Q+DK D ++K D LGL + +I ++++ + P+D+ Sbjct: 537 PIEPASMPGRSVVQWDKDDCADMHIIKVDLLGLGMMAVIKDCVDLVPRHYGV----PVDL 592 Query: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 A +P +D + LQ+++T +FQ+ESR + R P F D++ VA+ RPGP+ Sbjct: 593 AQLPQNDGDVYRTLQKADTVGMFQVESRAQMASLPRNYPTRFYDIVVQVAIIRPGPIVGN 652 Query: 647 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 M + ++ R+ +EE++Y H L+PVL+ T G+ L+QEQ++++A +++ ++ A+ Sbjct: 653 MANPYMRRRQKKEEVTY-----YHPLLEPVLKRTLGVPLFQEQLLRMAMIVANFSGTEAE 707 Query: 707 MLRRAMGKKKP-EEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYA 765 LRRA+G ++ + M + G +NG + + +I + FA YGF +SH+A++A Sbjct: 708 ELRRALGMRRSTQRMRELGVKLRAGMTENGFDPKTQEEIIQSISSFALYGFPESHAASFA 767 Query: 766 LVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHV 825 L++Y + + K HY A F AA++ LV + R GL++LP D+ ++ V Sbjct: 768 LIAYASAYFKVHYLAAFTAAILNNQPMGFYSPAVLVKDAQRHGLRVLPVDVQRSVWDCTV 827 Query: 826 N---DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKL 882 D+ ++ G+ ++G+ + E ++++R G F DL R LNR+ L L Sbjct: 828 EHAGDERKLRLGLRYVRGLRQETAEILVKSRENHGPFASSEDLGRRVPL--LNRKELVAL 885 Query: 883 IMSGAFDRLGP--HRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYAS 940 GA + +G HR + + + + E+ + Sbjct: 886 AQIGALNWVGGTAHRRDALWQVERV----------------SRRPGPLLQSAEEEEDVSP 929 Query: 941 CQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLV 1000 + L + GL + HP+ + + + + + + + + E G+ + AG V Sbjct: 930 LAQMNWEERLVADFNGTGLTVGKHPMTYHRERLAK-MRVLSAEQLQVAEDGRQVRIAGCV 988 Query: 1001 VAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFS 1060 +A + T +G +++D +G ++ ++ + ++ +R L+V G++ D Sbjct: 989 IARQRPGTAKG--FVFLSIEDETGIANAIISPQLYEQNRVVVFTERFLVVEGKLQNQD-- 1044 Query: 1061 GGLKMTAREVMDID 1074 G + + A+ V + Sbjct: 1045 GVIHVRAQRVQSLH 1058 >UniRef50_C8NF53 DNA polymerase III, alpha subunit n=1 Tax=Granulicatella adiacens ATCC 49175 RepID=C8NF53_9LACT Length = 1117 Score = 993 bits (2569), Expect = 0.0, Method: Composition-based stats. Identities = 358/1167 (30%), Positives = 601/1167 (51%), Gaps = 67/1167 (5%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 + L+V S YS++ + V LG LA+TD L G V+FY GI+P Sbjct: 2 PYTTLQVFSSYSLLKSTIRLNEYVATGKLLGYKQLALTDDGVLHGAVEFYERCIQNGIQP 61 Query: 65 IVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL 124 I+G F + + L V A + GY++L L S YQ+G + +W+ Sbjct: 62 ILGCTFEIAWKSDASKKEMLVVYAKGSKGYESLLKL-STLYQQGLTWTKEMT--EWIATH 118 Query: 125 NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHA 184 +E + ++ + + +G V + V E+ + + R E Sbjct: 119 SEDVKIVLPPTDSEWVAANSKGRLEAVLKAVKE--EYAGVEIAIGITREMVERSE--FEK 174 Query: 185 AVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEE 244 E EA G+ VA + R+++++D+ ++ AI G TL + + + + + Sbjct: 175 MREGIEAAGVLPVAFSVSRYLNATDYFPWKVLQAIRLGGTLSFTQE--DATGSESLPEAT 232 Query: 245 EMCELFADIPE--ALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKRAKEGLE 301 M ++F + L+N + K V + L + LP+FP D ++ +L + + + Sbjct: 233 SMAKVFQVVEGGVLLSNLEKFTKDLVVEIPLRDTMLPKFPVPDGKTSAQFLYELCEAAML 292 Query: 302 ERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPG 361 E P Y RL+ EL VI++MGF YFLIV + ++ +++ G+ G G Sbjct: 293 E-----------MGVTTPIYVNRLKEELAVIHEMGFDDYFLIVWDIMRHAREKGIQTGAG 341 Query: 362 RGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADM 421 RGS AGSLVAY L IT +DP+ + LLFERFLN ER +MPD D+DF +KR+ ++ ++ Sbjct: 342 RGSAAGSLVAYLLHITGVDPIRYHLLFERFLNRERYTMPDIDLDFPDDKREDILAYIVSK 401 Query: 422 YGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQL 481 YG V+QI+TFGT+ AK V+RDV +V G V + S I +TL + ++ Sbjct: 402 YGNQNVAQIVTFGTLGAKQVLRDVCKVFGENIITVQKFSNNIAQG-KVTLEQTYKENKAF 460 Query: 482 PEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEG------- 534 E E+ E + L +A+ LEG+ R++ HA GVV++ +T PL ++G Sbjct: 461 REHIESSERNRKLYQVAKALEGLPRHSSVHAAGVVLSQDALTKTVPLMKRDKGYSASLQE 520 Query: 535 -KHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDD 593 +TQ+ VE GL+K D LGL LT+++ A++ K K LDI IPLDD Sbjct: 521 ADWMLTQYAMQAVEKVGLLKMDLLGLSNLTLLHKAIQQTQKITKKE----LDITKIPLDD 576 Query: 594 KKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFID 653 ++F++ Q+++T +FQ ES G++ ++K ++P FED++A+++L+RPGP++ + +FI+ Sbjct: 577 PRTFELFQKAQTNGIFQFESDGIRRVLKEMKPTEFEDLVAVLSLYRPGPMEQ--ISHFIN 634 Query: 654 RKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMG 713 RK G E + YP H SL+ +LEPTYGI++YQEQVMQ A ++G++LG AD+LRRA+G Sbjct: 635 RKKGTEIVQYP-----HASLQRILEPTYGILVYQEQVMQAASEMAGFSLGEADILRRAIG 689 Query: 714 KKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLW 773 KK E +A Q+ F +GA G E A ++D +EKFA YGFNKSH+ AYA++SYQ + Sbjct: 690 KKNSETIAAQKEKFVQGAVSKGYKQEDAETVYDYIEKFANYGFNKSHAVAYAMLSYQLAY 749 Query: 774 LKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVY 833 LKA+YP F A+ + K+ + E ++G+KILPP IN+ F ND G IV Sbjct: 750 LKANYPTAFFTALFQNASAKSSKLQDYLVEARQLGIKILPPSINNSFADFVANDSGVIV- 808 Query: 834 GIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGP 893 G+ +IKG+ +E+I++ R + G F+ D R + +L LI +GAFD G Sbjct: 809 GLNSIKGIRRDFVESIVKNRYEYGPFKGFQDFAYRMGAQYTKEPLLVALINAGAFDEFGE 868 Query: 894 HRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGE 953 RA L ++ K+ H G+ + +E ++ + P + E Sbjct: 869 TRATLKANVDAVAKSVKFH------------GLNLSLEDDLEVAFTHVEEEPLLQRIGEE 916 Query: 954 RETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNR 1013 E LG ++ HP ++Y ++ ++ + + GL+V R + T++G + Sbjct: 917 IEVLGFSISPHPSSKYDPLMK----SGWIQAIQSVFEEGYMRFVGLIVDIRKISTRKGEK 972 Query: 1014 IGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDI 1073 + TL D SG ++V++F L + Q L+++ ++++ G+V G ++ + + Sbjct: 973 MAYVTLQDASGMIDVVVFPSTLAEIYQHLQQNTMVLMEGRVKRGQ-KGQWQLQLNRMYPM 1031 Query: 1074 ---DEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRF 1130 D+ ++ L I++ + ++ ++Q + ++ G PV L+ + + F Sbjct: 1032 SFADKLLADSSKKLQIAIRPEKHTPEVYAEIKQLVTKYK-GVTPVELFLVNSKTLVKNSF 1090 Query: 1131 GATWRVSPSDRLLNDLRGLIGSEQVEL 1157 V+ +L+ L ++ E +++ Sbjct: 1091 ANG--VNLESKLIPSLIDILDKECIKI 1115 >UniRef50_C1F6L4 DNA polymerase III, alpha subunit n=2 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F6L4_ACIC5 Length = 1072 Score = 985 bits (2547), Expect = 0.0, Method: Composition-based stats. Identities = 304/1094 (27%), Positives = 523/1094 (47%), Gaps = 57/1094 (5%) Query: 3 EPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGI 62 R+V L S +S ++G + L ++AAAL MPA+A+ D L G +F+ + G+ Sbjct: 2 TERYVELHAASAFSFLEGGSNPESLTERAAALQMPAMALLDRNGLYGAARFHTSAQRHGV 61 Query: 63 KPIVGADFNVQCDL------------LGDELTHLTVLAANNTGYQNLTLLISKAYQRGYG 110 + +GA+ V E L +L A GYQNL LIS+ R Sbjct: 62 QANIGAEVAVPEFGARLTPPAWLPHLWPTEPVRLPLLCATRKGYQNLCQLISRYKLREPS 121 Query: 111 AAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPD-RYFLE 169 + L + EGLI L+GG G + +L++G A + + F ++E Sbjct: 122 KQEGAARVNELEQFAEGLICLTGGSEGPLAAALMQGGEAAGQKLLHRLTAIFGHQHVYVE 181 Query: 170 LIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPK 229 L R ++E AA+ +A LP+VATN VR+ D + ++ AI LD Sbjct: 182 LQRHHDREQEWRNQAALRIAHKLRLPMVATNGVRYASERDREVLDLFTAIRHHTPLDRAG 241 Query: 230 RPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMS-T 288 + + +++RS EM LF DIP A+ NT+E++ R + Y P++P Sbjct: 242 HLLSANSLRHLRSAREMAALFRDIPAAIENTIELSSRLAFQLSDLGYEFPRYPVPAGDCM 301 Query: 289 EDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFI 348 + +L KR +EG+ R + +++E EL +I ++GF GYFLIV + I Sbjct: 302 DSFLRKRVQEGVALRY-----NSRHNHDLLARVHKQVERELSLIARLGFAGYFLIVWDII 356 Query: 349 QWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCM 408 ++ K + + V GRGS A S+V YAL+IT +DP+ DLLFERFLN R PD D+D Sbjct: 357 RFCKQHDILV-QGRGSAANSVVCYALEITAVDPVGMDLLFERFLNENRGEWPDIDLDLPS 415 Query: 409 E-KRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467 E KR+Q I++V YG + T K+ R+VG+ LG + R+S L+ Sbjct: 416 EEKREQAIQYVYQRYGELGAAMTANVITYRGKSAAREVGKALGFDADALQRLSGLVANFE 475 Query: 468 GMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAP 527 + + A + +++ +++ + R+ G+H+GG+VI ++ P Sbjct: 476 WKGPTDSLAHSFRHAGFDPAQPRIARYLELCTRIQDMPRHLGQHSGGMVICQGQLNQVVP 535 Query: 528 LYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIA 587 + V Q+DK D G++K D LGL + ++ +E+I + + +D+A Sbjct: 536 VERASMPGRTVVQWDKEDCADMGIIKVDLLGLGMMAVLKDCVELIPRHYGER----IDLA 591 Query: 588 AIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGM 647 +P D+ + LQR++T +FQ+ESR + R P F D++ VA+ RPGP+ M Sbjct: 592 QLPQ-DEAVYRTLQRADTVGMFQVESRAQMASLPRNMPAKFYDLVVQVAIIRPGPIVGKM 650 Query: 648 VDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADM 707 + ++ R+ G+E ++YP H SL+PVL+ T G+ L+QEQ+++IA ++ ++ A+ Sbjct: 651 MHPYMRRRQGKEPVTYP-----HPSLEPVLQRTLGVPLFQEQLLRIAMTVANFSGTEAEE 705 Query: 708 LRRAMGKKKP-EEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 LRRA+G ++ E M S G NGI +I + FA YGF +SH+A++AL Sbjct: 706 LRRAVGMRRSWERMKNLESKLRAGMAANGIAPATQEQIIQQISSFALYGFPESHAASFAL 765 Query: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 ++Y + +LK Y A F A++ +V + R GL++ P DI + + Sbjct: 766 IAYASAYLKVKYLAAFTCALLNNQPMGFYMPAVIVKDAQRHGLRVKPIDIQISAWPCTLE 825 Query: 827 DDGE----IVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKL 882 + + + G+G +G+ + EA + AR + G F +L AR L+R+ L L Sbjct: 826 QEPDDSLSLRLGLGYARGLRQRTAEATLHARQENGPFSSAENLVARVP--ALSRKELALL 883 Query: 883 IMSGAFDRLG--PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYAS 940 GA + L HR + + A + +F E + + + Sbjct: 884 ARIGALNSLDQVAHRRDALWQIERA-----------GKPEGPLFAQSNEALREQDVALPL 932 Query: 941 CQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLV 1000 + L + GL + HP++ Y ++ + G + + + GK++ AG V Sbjct: 933 MP-MTTEERLVADYFGTGLTVGKHPMS-YRRQELDHAGILTASALQQFQDGKLVRVAGCV 990 Query: 1001 VAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFS 1060 +A + T +G +++D +G +++ D ++ + ++ + + L+V G + D Sbjct: 991 IARQRPGTAKG--FVFLSMEDETGIANIIVTPDLFERERLIVTRSKFLLVEGPLQNQD-- 1046 Query: 1061 GGLKMTAREVMDID 1074 G + + A+ + + Sbjct: 1047 GVIHVKAQRLRSLS 1060 >UniRef50_C2E9M6 DNA polymerase III alpha subunit n=1 Tax=Lactobacillus ruminis ATCC 25644 RepID=C2E9M6_9LACO Length = 1120 Score = 982 bits (2540), Expect = 0.0, Method: Composition-based stats. Identities = 353/1179 (29%), Positives = 588/1179 (49%), Gaps = 95/1179 (8%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK-P 64 F L+V S YS++ K + V+ A+ +G AL +TD L G +F+ A GIK P Sbjct: 2 FAPLQVKSAYSLLQSPLKISDYVEAASKMGYEALCLTDVDVLYGAFEFFEACRKYGIKKP 61 Query: 65 IVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL 124 ++G + N+Q D +E L +LA N GY+NL + S + + P + ++ Sbjct: 62 VIGIELNMQGDG-EEEPISLLLLAKNAAGYRNLVKISS--NKLSENSLDPHDNPQTCDDI 118 Query: 125 NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHA 184 + L D ++ S V F+++ + L L + G L Sbjct: 119 KDCL---------DGVAVIVSPESIKVASSPKFFKKLQSNGAKLYLGK-GPQFSRELLLD 168 Query: 185 AVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEE 244 A +AE +P +A + V ++ D+ + AI ++ +R S +Y++S Sbjct: 169 AYRIAETLKIPQIALSKVEYLKPDDYFGQVVLQAIDADERINFDQRM---SGSEYLKSPS 225 Query: 245 EMCELF--ADIPEALANTVEIAKRCNVTVRLGEYFLPQFP----TGDMSTEDYLVKRAKE 298 E + A + T ++ + + E LP + +S DYL + + Sbjct: 226 EYQIDYKNAGMETEFGQTEKLLSEIDFWLTPSEISLPHYKFQKGVAKVSAHDYLKRLCAD 285 Query: 299 GLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPV 358 G++ + Y +RL+ EL+VI++MGF YFLIV Q+++ G+ V Sbjct: 286 GIKRCFRENPDKID-------IYQKRLDHELKVIHEMGFEDYFLIVSGITQYARSVGIIV 338 Query: 359 GPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHV 418 GPGRGS AGSLV+Y L+ITD+DP++++LLFERFLN ER MPD D+D KRD++I++V Sbjct: 339 GPGRGSAAGSLVSYVLRITDVDPIKYNLLFERFLNEERHEMPDIDLDIPDNKRDRIIKYV 398 Query: 419 ADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAE 478 D YG ++QIITF T AK +RD R+ G D SK IP MTL +A Sbjct: 399 YDTYGSRHMAQIITFDTFGAKQALRDGCRIFGLTQAETDAWSKAIPFGDKMTLERARRES 458 Query: 479 PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538 ++ + + + L + A+KLEG+ R+ HA G+V++ + + P+ +G + + Sbjct: 459 QRIRNLIADSKRNERLFETAQKLEGLPRHFSTHAAGIVLSDQNLDEVVPVQIGNDG-YLM 517 Query: 539 TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598 TQF K VE AGL+K D LGL+ L I+N A +++N+ +A LD+ IPLDDK + + Sbjct: 518 TQFSKKPVEKAGLLKIDLLGLKNLRILNTAKDLVNQNKA----SKLDLEQIPLDDKATLE 573 Query: 599 MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658 + ++T +FQ +S G++ + +++P+ FED++AL AL+RPGP+ +D F R+HGR Sbjct: 574 LFYNAKTEGIFQFDSYGIRQAMLKIRPENFEDVVALNALYRPGPI--RNIDEFTARRHGR 631 Query: 659 EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718 + +SYP + L+P+L TYGII+YQEQ MQ++ + G+TLG AD+LR+A+ KK+ E Sbjct: 632 KTVSYPA-----KVLEPILNSTYGIIVYQEQAMQVSSKMGGFTLGEADILRQAISKKEHE 686 Query: 719 EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778 + + R F GA+K G + E A++++D +E+F YGFN+SH+ AY+ +++Q +LKAHY Sbjct: 687 TIERMRVKFVAGAQKKGFSKEDALRVYDYIERFGEYGFNRSHAVAYSKMAFQMAYLKAHY 746 Query: 779 PAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAI 838 PAEF A+++ + N EK + + +KIL PDIN Y F + DG I++G ++ Sbjct: 747 PAEFYCALLSTVIGNVEKTQSFLAAAKKRKIKILAPDINKSSYDFRI-SDGGIMFGFLSV 805 Query: 839 KGVGEGPIEAIIEARNKGG--YFRELFDLCARTDTKKL----------NRR--------- 877 KG+ I I+ R+ GG F+ L D R + L +R Sbjct: 806 KGIRFDFIRQILAERHAGGYRPFKSLDDFMNRMVERALVDKHDHDGDAKKREKIAKSYRP 865 Query: 878 VLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQS 937 ++E LI GAFD L R+ L+N L +K + + S Sbjct: 866 IVETLIYVGAFDSLEADRSQLLNRLDVLVKYDQ------------LSMSVPLLESLFVPS 913 Query: 938 YASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAA 997 + + L+ E+E LG+YL+ HP+++Y + G+ + + Sbjct: 914 KKNVRKLTLDERLEKEKERLGVYLSAHPLDKY----SAFAQGIGASSLASLVPDQQAIVL 969 Query: 998 GLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFD 1057 + + + TK+G+ + + D++G +E F +Y + L+K+ L+ G+V Sbjct: 970 VRIKEIKKIKTKKGDEMAFVSCIDQTGEMEATFFPKQFLRYHKGLKKNAELLFYGRVQ-- 1027 Query: 1058 DFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHL 1117 GL V I+ + + I + +L ++ + G IPV Sbjct: 1028 -DRNGLSFVVDRVEPIEYIALHFPNTITI---------ETKRQLFAIMKRYL-GPIPVI- 1075 Query: 1118 YYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSEQVE 1156 + + + + + ++L ++ L+ E + Sbjct: 1076 -VEDEAKQTKKMLDRRFWLKKDQKMLEEIGELLNRENIR 1113 >UniRef50_Q043V3 DNA polymerase III catalytic subunit, DnaE type n=15 Tax=Lactobacillus RepID=Q043V3_LACGA Length = 1038 Score = 981 bits (2537), Expect = 0.0, Method: Composition-based stats. Identities = 337/1059 (31%), Positives = 551/1059 (52%), Gaps = 47/1059 (4%) Query: 7 VHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIV 66 V L+ S +++++ K L + A G ALA+TD GLV FY A GIKP++ Sbjct: 4 VSLQNLSSFTLLESPTKVKDLAENAKKKGYSALALTDVNITYGLVNFYKAAKETGIKPLL 63 Query: 67 GADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIID-RDWLIELN 125 G + + L V+A ++ GY+N+ L S + + L + Sbjct: 64 GMQLRINGLIDQANKYDLIVIAKDDQGYKNILRLSSAVNLLTENGEKENVLELEELKKYL 123 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 185 L++++ + + L N + V ++ P + L ++ Y++ Sbjct: 124 GHLVIITPSNLHSELKMLQTNNPNMGANYVRILKDAVPTSSLVYLGVYADQGQQEYINYL 183 Query: 186 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 245 LA L + A D ++++ ++ AI L++ ++ + Y+++ EE Sbjct: 184 RSLATQFELSLAAVEDGQYLNRNEQFLRRTLQAIKSNTHLENVEQLAKQAGSHYLKTSEE 243 Query: 246 MCELFA--DIPEALANTVEIAKRCNVTVRLGEYFLPQFP-TGDMSTEDYLVKRAKEGLEE 302 + + +I +AL N +I + CN + + LP+F ++++YL A+ GL + Sbjct: 244 LQVNYRKFEIEDALENAEKIGQLCNAKITFQDPQLPKFKQNKFPTSKEYLHSLAQNGLAK 303 Query: 303 RLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGR 362 R P+ Y +RL+ EL+VIN+MGF YFLIV + + ++ + GPGR Sbjct: 304 RFKGQIPER---------YQKRLDYELKVINEMGFDDYFLIVWDVMNFAHSVHITTGPGR 354 Query: 363 GSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMY 422 GS AGSLV+YAL+IT++DPLE++LLFERFLNP R MPD D+D +RD+VI+++ + Y Sbjct: 355 GSAAGSLVSYALRITEVDPLEYNLLFERFLNPARQQMPDIDLDIPDNRRDEVIKYMFEKY 414 Query: 423 GRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG-MTLAKAFEAEPQL 481 G + +QI+TFGT+AAK V++DV RV G R IP G +TLA+A++ +L Sbjct: 415 GMNHAAQILTFGTLAAKQVLKDVCRVFGLNKVETYRWLDAIPHAKGKITLAEAYQKSKEL 474 Query: 482 PEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQF 541 + + K L A LE + R+ HA G+VI + + L G PVTQ Sbjct: 475 QLLVNTNTFSKILFATAEHLENLPRHYSIHAAGLVITDDSLAEIVGLQAGPLG-IPVTQQ 533 Query: 542 DKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQ 601 K +VE GL+K DFLGLR LTI+ + + + +D IPL+D+++ + Q Sbjct: 534 TKLNVESLGLLKIDFLGLRNLTILGNIIAALK-----SEGVEIDPNQIPLNDQETLALFQ 588 Query: 602 RSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEI 661 R +T AVFQ ES G+K ++++L PD FED++A+ AL+RPGP+ + +FI+RKHG+E + Sbjct: 589 RGDTDAVFQFESDGIKRVLEQLHPDSFEDIVAVNALYRPGPM--NNIGHFINRKHGKERV 646 Query: 662 SYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMA 721 YPD SLK +L PTYG+++YQEQVMQ AQVL+G++LG AD+LRRAM KK + + Sbjct: 647 QYPD-----PSLKKILGPTYGVLVYQEQVMQTAQVLAGFSLGEADLLRRAMSKKNADVIQ 701 Query: 722 KQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAE 781 K+R F +GA K G E+A +++D + +FA YGFN+SH+ AY+ +++ + K HYP Sbjct: 702 KEREKFIQGAVKLGRRKEVAEQVYDYIAQFANYGFNRSHAVAYSKIAFWLAYFKVHYPGA 761 Query: 782 FMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGV 841 F +++ +++ N K+ + + G+K LPPDI + F + +G+I+ G+ AI+G+ Sbjct: 762 FYLSLLNSNIGNRNKIAQYLMQAQEAGIKTLPPDIENSQADFSLE-NGKILVGLKAIRGL 820 Query: 842 GEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNS 901 ++ I+E + + + D + D L+ + LI +GAFDRL P+R L+ Sbjct: 821 RSDLLKQILEIKR---PIKSMTDFLWKIDNNLLSADAIANLIKAGAFDRLAPNRNELLKI 877 Query: 902 LGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYL 961 D +++ M G E +E + E E +G Sbjct: 878 NKDLVESVK------------MAGSNLSLFETLEPKIEEEKMPTAAEKSAMEVEAMGFST 925 Query: 962 TGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDD 1021 +PI K +Y RL+ E+G + G ++ + + TK+G+ + D Sbjct: 926 GINPIIAVQKYARKY-NAKRLQAFESNEQGIAV---GKLMRIKQITTKKGDNMAFAVFSD 981 Query: 1022 RSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFS 1060 SG + +F K ++ L+ I ++ + D FS Sbjct: 982 SSGDKDFTIFPQVWKKVEENLKIGDIYLLQVKTQSDRFS 1020 >UniRef50_A4X9U2 DNA polymerase III, alpha subunit n=5 Tax=Actinomycetales RepID=A4X9U2_SALTO Length = 1124 Score = 980 bits (2533), Expect = 0.0, Method: Composition-based stats. Identities = 323/1111 (29%), Positives = 499/1111 (44%), Gaps = 89/1111 (8%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 + L H+++S +DG + L ++A LG+ ALA+TD G+V+F A + Sbjct: 73 PYAELHTHTNFSFLDGASHPEELAEEAVRLGLTALAVTDHDGFYGVVRFAEAARALHLPT 132 Query: 65 IVGADFNVQCDLLGDELT-----HLTVLAANNTGYQNLTLLISKAYQRGYGAAGPII--D 117 + GA+ ++ + HL +LA + GY L IS+A RG PI Sbjct: 133 VFGAELSLDLPGAPNGEPDPLGRHLLLLAHGHEGYARLAATISRAQLRGGEKGRPIYGEL 192 Query: 118 RDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRTGRP 176 + EL + +++L+G R G V +LL + F + +EL G P Sbjct: 193 AEVAAELRDHVLVLTGCRKGHVPAALLTEGVDAAARELDRLTALFGAETVAVELTDHGHP 252 Query: 177 DEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSP 236 + A ELAEA GLP VATN+V + A+ +LD+ + Sbjct: 253 IDADRNDALAELAEAAGLPTVATNNVHYATPGRRRLATTLAAVRARRSLDEIDGWLPAAG 312 Query: 237 QQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTE-DYLVKR 295 ++RS EM FA P A+A E ++L LP +P TE +L Sbjct: 313 AAHLRSGAEMAARFAAYPGAVARAAEFGAELAFDLQLVAPALPAYPVASGHTEMSWLRHL 372 Query: 296 AKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNG 355 G ER + PE +LE EL +I ++GFPGYFL+V + + + ++ Sbjct: 373 TARGARERYGPP--------EAHPEAYAQLEHELNMIEELGFPGYFLVVYDIVTFCREQD 424 Query: 356 VPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVI 415 + GRGS A S V YAL+IT++D + LLFERFL PER PD DVD +R++VI Sbjct: 425 I-YCQGRGSAANSAVCYALRITNVDAVRHRLLFERFLAPERDGPPDIDVDIESSRREEVI 483 Query: 416 EHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAF 475 +HV YGR+ +Q+ + ++ +RDV + G G D SK I G A Sbjct: 484 QHVYARYGREHTAQVANVISYRPRSAVRDVAKAFGFSPGQQDAWSKQI-DRWGSVAAADV 542 Query: 476 EAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGK 535 E P+ ++ A ++ R+ G H+GG+VI + + P+ Sbjct: 543 EGIPE------------PVVAYADAVQTFPRHLGIHSGGMVICDRPVIEVCPVEWGRMPG 590 Query: 536 HPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKK 595 V Q+DK D GLVKFD LGL L ++ +MI R L++ + LDD + Sbjct: 591 RSVLQWDKDDCAAVGLVKFDLLGLGMLAALHHGYDMIGAR--------LELGDMTLDDDE 642 Query: 596 SFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRK 655 +DML R++ VFQ+ESR + RL+P CF D++ VAL RPGP+Q G V +I RK Sbjct: 643 VYDMLCRADAVGVFQVESRAQMATLPRLKPRCFYDLVVEVALIRPGPIQGGSVHPYIRRK 702 Query: 656 HGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKK 715 +G+E +++P H ++ LE T G+ L+QEQ+MQ+A L+G+ AD LRRAMG K Sbjct: 703 NGQEPVTFP-----HPLMRNALEKTLGVPLFQEQLMQLAIDLAGFDAAEADQLRRAMGAK 757 Query: 716 K-PEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWL 774 + E MA+ G + GI ELA ++ + FA YGF +SH+ ++A + Y + WL Sbjct: 758 RSAERMARIADRLYAGMAERGITGELADDVYRKLTAFASYGFPESHAMSFAYLVYASSWL 817 Query: 775 KAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN-------- 826 K ++PA F+AA++ A LVD+ R G+++ PD+N+ + Sbjct: 818 KRYHPAPFLAALLNAQPMGFYSPQTLVDDARRHGVEVRRPDVNASGAGAVLESTPSTRWG 877 Query: 827 ------------DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKL 874 + G+ +++ +G I R G +R++ DL R L Sbjct: 878 SQPGEPPHAWGLGGPAVRLGLDSVRTLGGEVAGRIETERAARGPYRDMSDLARRV---GL 934 Query: 875 NRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQI 934 LE L + AF G R + S G AA Q G Sbjct: 935 TAAQLEALATADAFACFGVTRRQALWSAG----AAAQEHPDRLPG------------TVP 978 Query: 935 EQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVI 994 + L + GL HP ++++ +G V + + E G+ + Sbjct: 979 GTVAPTLPGMGAVDRLVADVWATGLSPESHPARFVREQLDA-LGAVPIARLARVEPGRRV 1037 Query: 995 TAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQV 1054 G+V + T G + L+D +G L V +Y+Q+ + L+V G + Sbjct: 1038 RVGGIVTHRQRPATAGG--VTFLNLEDETGMLNVTCSPGLWQRYRQVAKNSGGLVVRGLL 1095 Query: 1055 SFDDFSGGLKMTAREVMDIDEAREKYARGLA 1085 + G + TA + I+ AR Sbjct: 1096 HRHE--GVINFTADRLDPIELPVRPAARDFR 1124 >UniRef50_C6X5Z0 DNA polymerase III alpha subunit n=1 Tax=Flavobacteriaceae bacterium 3519-10 RepID=C6X5Z0_FLAB3 Length = 1567 Score = 978 bits (2529), Expect = 0.0, Method: Composition-based stats. Identities = 360/1078 (33%), Positives = 561/1078 (52%), Gaps = 105/1078 (9%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG--I 62 + + HS YS + L+ KA + A+ I D N+ G KF I Sbjct: 262 DYFNFHNHSIYSSLQSSTHINELISKAMDNDLKAVGIVDLGNMMGAFKFVSEVEKTNAQI 321 Query: 63 K-------------------------------PIVGADFNVQCD--------LLGDELTH 83 K P++G +F + D T+ Sbjct: 322 KKTYQTYLENKEKADREGTAFTEKEPRKEPLIPVIGCEFYISDRPEQKQFTKDDPDRRTN 381 Query: 84 LTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSL 143 + +LA N +GY+NL L S Y G+ P I R + E + LI L+ G +GDV ++ Sbjct: 382 VVLLAKNFSGYKNLVKLSSLGYVNGFYFGVPRISRKMIAEFKDNLIALTAGTLGDVPSTV 441 Query: 144 LRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVR 203 L +E +++ F + +++++ +EE + A+ + ++A N+ Sbjct: 442 LEFGEQKGEEVFKWWKNTFGEDFYVQIQNHEVEEEEHLNEVLLGFADQYDVKILAQNETF 501 Query: 204 FIDSSDFDAHEIRVAIHDGFTLDDP------KRPRNYSPQQYMRSEEEMCELFADIPEAL 257 + + SD + +I I DG L P KR S Q Y+++ +E+ + F P+A Sbjct: 502 YTNKSDANIQDILYCIKDGEKLSSPVGKGFGKRRGLPSKQFYIKNTDELKQSFIQFPDAF 561 Query: 258 ANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTED-------------YLVKRAKEGLEERL 304 E+ + + LP+F + D YL G E+R Sbjct: 562 EAYTELLGKFEPYTLKRDVLLPEFDIPEEFLHDEDKTDGGKRGENAYLRHLTYAGAEKRY 621 Query: 305 AFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGS 364 + E +RL+ EL+VI + G+PGYFLIV +F ++ GV VGPGRGS Sbjct: 622 PEI----------TDEIRKRLDFELEVIAKTGYPGYFLIVQDFCNEARKMGVWVGPGRGS 671 Query: 365 GAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGR 424 AGS VAY IT++DP+E++LLFERFLNPER+SMPD D+DF E RD++I+ V + YG+ Sbjct: 672 AAGSAVAYCTGITNVDPIEYNLLFERFLNPERISMPDIDIDFDDEGRDKIIKWVVEKYGK 731 Query: 425 DAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPE- 483 + V+QIIT+ + K+ I+D GRVL + I+KLIP PGM +AKAF +LP Sbjct: 732 NNVAQIITYSVLGGKSAIKDAGRVLDLSIPETNNIAKLIPSAPGMNIAKAFSKFEKLPPE 791 Query: 484 ------------IYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYC- 530 DE ++ A+++EG RN G HA GV+I P I++ P+ Sbjct: 792 DKVLAQEMKDILANPTDERY-DVLYAAQRMEGCIRNTGIHACGVIITPEDISNLIPITIA 850 Query: 531 DEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIP 590 ++ V+QFD S E AGL+K DFLGLRTLTII A+++I +R +DI +P Sbjct: 851 AKDPDILVSQFDNSVAESAGLLKMDFLGLRTLTIIKHAIKLIKERHGTE----IDIDHVP 906 Query: 591 LDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDN 650 LDD K++ + Q T +FQ ES GM+ ++ L+P F D+IA+ AL+RPGP++ + N Sbjct: 907 LDDAKTYQLFQEGRTIGIFQYESPGMQKYMRELKPTKFADLIAMNALYRPGPIK--YIPN 964 Query: 651 FIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRR 710 FI+RK+ EE Y E K LE TYGI +YQEQVM ++Q L+ +T G AD LR+ Sbjct: 965 FINRKNEIEETVYDL-----EETKEFLEETYGITVYQEQVMLLSQKLANFTKGEADTLRK 1019 Query: 711 AMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQ 770 AMGKK + K F E +KN +N + KI+ E FA Y FNKSHS YAL++Y Sbjct: 1020 AMGKKDRATLDKMYPKFLEEGQKNNLNVDKLNKIWKDWEAFAEYAFNKSHSTCYALIAYH 1079 Query: 771 TLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGE 830 T +LKA+YPAE+MA+VMT +++NT+++ +++C +G+ +L P +N Y F VN+ G+ Sbjct: 1080 TAYLKANYPAEYMASVMTNNLNNTKQITMFMEDCKSIGVDVLGPAVNESQYEFSVNEKGQ 1139 Query: 831 IVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDR 890 I +G+GAIKG+G GP EAI++ R K ++ ++D + + ++N+RV E L+++GAFD Sbjct: 1140 IRFGLGAIKGIGSGPSEAIVDGR-KNEKYKNIYDFFEKIPSSQMNKRVAESLVVAGAFDE 1198 Query: 891 LG-PHRAALMN-------SLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942 + HRA + ++ L+ ++ + +F AEE + + Sbjct: 1199 VDRYHRAQYFDIDITGKTTIERLLRYGQSFQDSKNEIENSLFADFAEEVKIEQPKINPAP 1258 Query: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLV 1000 W +L+ E+E +G YL+ HP+++Y + + G + K++ ++ + + +V Sbjct: 1259 EWQNMHMLNKEKEIIGFYLSAHPLDEYRFQYQFLQGALSKKEILEGKKDEPVEIEKIV 1316 Score = 84.5 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 64/159 (40%), Gaps = 4/159 (2%) Query: 993 VITAAGLVVAARVMVTKR-GNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVS 1051 AGLV V K G +I TL+D SG L + ++ +E R +I Sbjct: 1403 EYMVAGLVTEYTVKDGKNSGEKIAFVTLEDYSGSYGFRLGDRDYMRLREKIEVQRFVIFK 1462 Query: 1052 GQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSG 1111 + + + EV+D+ +A EK+A+ + + + + + + +++L + SG Sbjct: 1463 IKF-AQSRDNRVFVNVAEVIDLKDAFEKFAKKMTVVVDVNDLRKEDIVFFKENLLGN-SG 1520 Query: 1112 TIPVHLYYQRADARARL-RFGATWRVSPSDRLLNDLRGL 1149 ++ + D + +V + LL + + Sbjct: 1521 EQKLNFLVKNPDDHTVIEMMSVKTQVEINGDLLEVINNM 1559 >UniRef50_C5QT78 DNA polymerase III, alpha subunit n=5 Tax=Staphylococcus RepID=C5QT78_STAEP Length = 1069 Score = 978 bits (2528), Expect = 0.0, Method: Composition-based stats. Identities = 349/1157 (30%), Positives = 581/1157 (50%), Gaps = 97/1157 (8%) Query: 7 VHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIV 66 HL +H+ Y +++ + ++ KA G ALAITD L G KFY A A I PI Sbjct: 3 AHLNIHTAYDLLNASLRIEDVINKAKNEGYTALAITDTHVLYGFPKFYDACIAADIHPIF 62 Query: 67 GADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNE 126 G + L E VLA NN G + L L S + +WL ++ Sbjct: 63 GMTLILTDGLYKVET---VVLAQNNEGLKALYQLSSAIKM----KEKEEVPLEWLKRYDD 115 Query: 127 GLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAV 186 LI++ V+ E F D + + T + Sbjct: 116 NLIII----------------FKDVESTHLQILEAFNDHTHVYMNHTSDDIIDR------ 153 Query: 187 ELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEM 246 V R+++ D D AI D LD +++ ++ + E+ Sbjct: 154 --------KKVWLQSARYLNREDADTISALQAIRDNSKLDLINESKDFG--EHFPDQNEL 203 Query: 247 CELFADI-PEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMS-TEDYLVKRAKEGLEERL 304 + D+ E + NT I C + + LPQF T + ++YL Sbjct: 204 KNISDDVDEEVIKNTQTIVDLCQAELVYHQSLLPQFVTPNGEVAKEYL-----------W 252 Query: 305 AFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGS 364 + L E +Y ERL+ E ++I MGF YFLIV + I ++K + V VGPGRGS Sbjct: 253 SVLIDKLNEWNLHNDQYLERLKHEYEIITNMGFEDYFLIVSDLIHYAKTHDVMVGPGRGS 312 Query: 365 GAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGR 424 AGSLV+Y L IT +DP++F+LLFERFLNPERV+MPD D+DF +R++VI++V D YG Sbjct: 313 SAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRREKVIQYVQDKYGD 372 Query: 425 DAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEI 484 VS I+TFG + A+AV RDVGR++G ++ ISKLIP G+TL +A++ + Sbjct: 373 LHVSGIVTFGHLLARAVGRDVGRIMGFDETTLNEISKLIPHKLGITLDEAYQQD-NFKAF 431 Query: 485 YEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKS 544 + + DM++KLEG+ R+ HA G++I + FAPL + G +TQ+ + Sbjct: 432 VHRNHRNELWFDMSKKLEGLPRHTSTHAAGIIINDQPLYKFAPLTLGDTG--LLTQWTMT 489 Query: 545 DVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSE 604 + E GL+K DFLGLR L+II+ + + K + +D+ IP DD+K F +L + + Sbjct: 490 EAERIGLLKIDFLGLRNLSIIHQIVTQVKK----DLNIDIDVETIPFDDRKVFKLLSQGD 545 Query: 605 TTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYP 664 TT +FQLES G++ ++KRLQP+ FED++A+ +L+RPGP++ + +I R+H ++ Y Sbjct: 546 TTGIFQLESDGVRSVLKRLQPEHFEDIVAVTSLYRPGPMEE--IPTYITRRHDPSKVEY- 602 Query: 665 DVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQR 724 H L+P+L+ TYG+I+YQEQ+MQIA + ++ G AD+LRRAM KK + +R Sbjct: 603 ----LHPDLEPILKNTYGVIIYQEQIMQIASKFANFSYGEADILRRAMSKKNRAVLESER 658 Query: 725 SVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMA 784 F GA+ NG + +++ +IFDL+ KFA YGF ++H+ +Y+ ++Y +LK +YP F A Sbjct: 659 QHFVNGAKDNGYDEQMSKQIFDLILKFADYGFPRAHAVSYSKIAYIMSYLKVYYPNYFYA 718 Query: 785 AVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEG 844 +++ + + +K ++DE + ILPP+IN + + G I +G IKGVG Sbjct: 719 NILSNVIGSEKKTANMIDEAKHQKINILPPNINESHWFYKATSQG-IYLSLGTIKGVGYQ 777 Query: 845 PIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGD 904 ++ I++ R G F++ FD R + R++LE LI+ GAFD +RA L+ ++ Sbjct: 778 SVKLIVDERYNNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDNFDKNRATLLQAIDQ 837 Query: 905 ALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGH 964 L + + +F +L +Q Y + P++++ + E+E LG Y++ H Sbjct: 838 VLDTTSDVEQDDM-----LFDIL-----TPKQVYEDKEELPDKLLSNYEKEYLGFYISKH 887 Query: 965 PINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSG 1024 P+ + E ++Y+G +L + + + + TK G + TL+D Sbjct: 888 PVEK-EFEKKQYLGIYKLSNAQNFQP-----ILVQFDTIKQIRTKNGQNMAFVTLNDGMT 941 Query: 1025 RLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYAR-G 1083 ++ ++F D +Y+ + + + IV G+ + L++ ++++I+ + + Sbjct: 942 LMDGVIFPDKFKRYEASISNEEMFIVIGKFE--KRNQQLQLIINQIIEINTYKNEKINAS 999 Query: 1084 LAISLTDRQIDDQLLNRLRQSLEPHRSGTI---PVHLYYQRADARARLRFGATWRVSPSD 1140 + + + + L + +SG V+ + +R ++ RL F +S + Sbjct: 1000 KKVIIRNAHHLPSNIQEL---IMNEKSGDQHLLEVNAFNERNNSMNRLGF-----LSKDE 1051 Query: 1141 RLLNDLRGLIGSEQVEL 1157 + L + + Sbjct: 1052 VTIQQLFDSLNPSDIRF 1068 >UniRef50_B7CD33 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CD33_9FIRM Length = 989 Score = 977 bits (2526), Expect = 0.0, Method: Composition-based stats. Identities = 323/1045 (30%), Positives = 530/1045 (50%), Gaps = 64/1045 (6%) Query: 32 AALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVQCDLLGDELTHLTVLAANN 91 LG + +TD + G ++FY + I+G + + +E H +LA N+ Sbjct: 6 KQLGYNHVCLTDHNVMYGTMEFYQLCKKHNVHAIIGLEV---DSIYNEEPFHFILLAKND 62 Query: 92 TGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRS-LLRGNSAL 150 G QNL L S + D +I+ + ++L+ D + + + Sbjct: 63 MGLQNLYKLSSII--------KENVSFDEVIKYAKDCVVLTSSDGKDTFSAYIEHQDLEK 114 Query: 151 VDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDF 210 + V + F D +++ + + + VA + + + S D Sbjct: 115 LSAFVELCKNSFSD-FYVSISMNDSGKKRVDNKIL----KQLDCKCVALSRILYEKSEDV 169 Query: 211 DAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVT 270 + + AI ++ + + Q+Y+RS +EM L+ + L T +IA+ CNV Sbjct: 170 KSLQALRAIAKQTSI--ENQGLDVQFQRYLRSPQEMEALYDECD--LLATEQIARMCNVQ 225 Query: 271 VRLGEYFLPQFPTG-DMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETEL 329 + + LP F + + DYLVK K+GLE+RL Y RLE EL Sbjct: 226 MAFQKSKLPVFENKLHIDSSDYLVKLCKKGLEKRLNGNL---------DAVYMNRLEYEL 276 Query: 330 QVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFE 389 VI MGF YFLIV +FI++++ + VGPGRGS AGSLVAY L IT +DP++ +LLFE Sbjct: 277 SVIINMGFTDYFLIVWDFIRYARSKDIFVGPGRGSAAGSLVAYCLGITHIDPIQNNLLFE 336 Query: 390 RFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVL 449 RFLNP R+SMPD D DF ++RD+VI +V +YG+D VS I+TF T+ A+ IRDVGRV+ Sbjct: 337 RFLNPSRISMPDIDTDFPDDRRDEVIRYVRKLYGQDHVSHIVTFNTLQARQAIRDVGRVM 396 Query: 450 GHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAG 509 P VD +SK++ P +TL +A+ + ++D+++ L M +EG+ R+ Sbjct: 397 NIPARIVDELSKMLKNTPKITLMQAYNDNALFRKRIQSDQKLIELFQMCVSIEGLPRHTS 456 Query: 510 KHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWAL 569 HA G+V++ I + PL +G TQF +E GL+K DFLG+R LT I+ + Sbjct: 457 LHAAGIVLSDQPIVNVCPLV-SVDGDIQATQFTAEYLEDLGLIKMDFLGIRNLTTIHEIV 515 Query: 570 EMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFE 629 + +++ + LD+ I L D K++ +L T VFQLES G+ L++++QP+ E Sbjct: 516 TNLKEQKHIS----LDMMKINLKDAKTYQLLSLGNTLGVFQLESSGITTLLQKIQPNKIE 571 Query: 630 DMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQ 689 D+ ++AL+RPG +Q +D +I+RK ++ YP H L+P+L+ TYGI++YQEQ Sbjct: 572 DISVVLALYRPGAMQH--IDTYIERKKDPSKVVYP-----HPLLEPILKETYGIMIYQEQ 624 Query: 690 VMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVE 749 VMQ AQV+ G++L AD LR+AM KKK + M + F GA KN I ++ +IF ++E Sbjct: 625 VMQTAQVIGGFSLAQADTLRKAMSKKKLDVMQNLKEQFILGARKNRIKDSVSNEIFSIME 684 Query: 750 KFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGL 809 +FAGYGFNKSHS AY+LV+YQ +LKA+YP F +++ + + + K + EC R + Sbjct: 685 QFAGYGFNKSHSYAYSLVAYQMAYLKANYPLYFYQSLLNSVIGSGIKTSQYIYECKRRNI 744 Query: 810 KILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCART 869 + DIN + + I + +KGVG+ IIE + +LFD A+ Sbjct: 745 VVNGCDINHSKAFYTIE-QNSIRMPLQVLKGVGKTIYPTIIE----HVPYTDLFDFLAKA 799 Query: 870 DTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAE 929 K+N + LI GA D G +RA L +L + + + F +++ Sbjct: 800 SMYKINESTIRILIDGGALDCFGYNRATLNENLRKLMDYVNIVRIEDPNDLRFDFSIVSR 859 Query: 930 EPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTE 989 Q + E+ G Y++ HP+ + +Y + L ++ Sbjct: 860 PGIQRIKENP-------IQKAQKEQYVYGFYVSEHPVQSLR--MHKYPNCIPL--LNAVN 908 Query: 990 RGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILI 1049 R + V + R TK+G+ + +++D +G+++ ++ ++ ++ ++KDRI + Sbjct: 909 RDGYMNILVRVASFRTHKTKKGDWMCFMSVEDEAGKMDAVIMPRLYEQQKENIQKDRICL 968 Query: 1050 VSGQVSFDDFSGGLKMTAREVMDID 1074 + G+ + + I+ Sbjct: 969 IQGKKDR-----PTSIVVNRIEWIE 988 >UniRef50_Q47EP3 Error-prone DNA polymerase n=16 Tax=Bacteria RepID=DNAE2_DECAR Length = 1027 Score = 974 bits (2518), Expect = 0.0, Method: Composition-based stats. Identities = 299/1082 (27%), Positives = 491/1082 (45%), Gaps = 65/1082 (6%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS P + L S++S + G + L +A A G ALA+TD +L G+V+ + A Sbjct: 1 MSLPEYAELHCLSNFSFLRGASHPEELAARALAQGYAALALTDECSLAGVVRAHLAAKKH 60 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 G+K IVG++ + + L LA N GY NL+ LI+ A +R + D Sbjct: 61 GLKFIVGSEM------MTVDGLKLVFLACNRHGYGNLSALITLARRRAEKGGYTLHRNDL 114 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 180 G L + V N + D + FP R ++ + P++ Sbjct: 115 ESISPSG--ALPDCLVLWVP----GNNPSSADG--EWLVSRFPGRSWIAVELHAGPEDAE 166 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 L L E GLP+VAT DV + ++ A+ T+ + + ++++ Sbjct: 167 RLAGLQSLGEVCGLPLVATGDVHMHIKARRPVQDVLTALRLKSTVFEAGYALFPNGERHL 226 Query: 241 RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMST-EDYLVKRAKEG 299 RS + L+ PE LA T+ IA RC + Y P+ T +L + G Sbjct: 227 RSRLRLSRLYP--PELLAETLNIAARCEFLLDELRYEYPEEIIPSGETPASWLRSETERG 284 Query: 300 LEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVG 359 L+ R P ER+E EL +I +M + YFL V + + +++ + Sbjct: 285 LQRRYPAGVP---------GSVRERIEHELGLIAEMAYEAYFLTVYDIVCYARSQDIL-C 334 Query: 360 PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVA 419 GRGS A S V YAL +T++DP LLFERF++ ER PD DVDF E+R+ VI+++ Sbjct: 335 QGRGSAANSAVCYALGVTEVDPARSALLFERFVSKERGEPPDIDVDFEHERREDVIQYIY 394 Query: 420 DMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEP 479 YGR+ + T K +RD GR LG ++ ++ + + E Sbjct: 395 TKYGRERAALAAALITYRTKGALRDAGRALGFGIAQINALTASLAWWDKR--EQLPERFA 452 Query: 480 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 539 +L + V+ + +A L G R+ +H GG VI+ ++ P+ V Sbjct: 453 EL-GLDPHAPRVEKWLAIAEALRGFPRHLTQHVGGFVISRGPLSRLVPVENAAMSARSVI 511 Query: 540 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 599 Q+DK D++ GL+K D L L L+ I L+++ + + P+ + IP +D +++M Sbjct: 512 QWDKDDLDAMGLMKVDILALGMLSAIRRMLQIVGETTGR----PMKMQDIPAEDPATYEM 567 Query: 600 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 659 L +++ VFQ+ESR ++ RL+P F D++ VAL RPGP+Q MV ++ R+ GRE Sbjct: 568 LCHADSMGVFQVESRAQMAMLPRLRPQNFYDLVVEVALVRPGPIQGDMVHPYLKRRQGRE 627 Query: 660 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK-KKPE 718 I ++ VLE TYG+ ++QEQVMQ+A V + +T G AD LRRAM K+ Sbjct: 628 RIE-----EISPAVDAVLERTYGVPIFQEQVMQLAVVAANFTPGEADQLRRAMAAWKRKG 682 Query: 719 EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778 + G N + A +I ++ F YGF +SH+A++AL+ Y + WLK H+ Sbjct: 683 GLEPFEQKLLAGMAANDLPESFARRIIAQIQGFGEYGFPESHAASFALLVYASAWLKRHH 742 Query: 779 PAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAI 838 PA F+ ++ + L+ + R G+++LPPD+ + + +++ G + G+ I Sbjct: 743 PAAFLCGLLNSQPMGFYSPSMLIQDARRHGVRVLPPDVMTSDWDSRLDERGAVRLGLREI 802 Query: 839 KGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAAL 898 G + I + F + DL AR L RR L+ L A L HR Sbjct: 803 SGFSVAAAKRITAVCRENQPFLNVADLAARA---GLQRRDLDLLAAGDALQGLAGHRRQ- 858 Query: 899 MNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLG 958 A A+ Q D+F +IE + L + +LG Sbjct: 859 -----------AAWAATVAVVQGDLFDGTPVVEAEIELPAP-----SDGENLVADYRSLG 902 Query: 959 LYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICT 1018 L L HP++ + + V D+ +I + G+VV + T G I T Sbjct: 903 LTLRSHPLSLLRQYLAE-RRFVTAADLKMAGHHTLIRSVGIVVGRQRPGTATG--IVFVT 959 Query: 1019 LDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEARE 1078 L+D +G V++ ++K ++ L +L V GQ+ + + + A+ ++D+ Sbjct: 960 LEDETGLSNVVVHPQLVEKQRRELLGSTLLGVYGQLQVE--GEVVHLVAKRLVDLSAWLG 1017 Query: 1079 KY 1080 + Sbjct: 1018 RL 1019 >UniRef50_Q6G8M4 DNA polymerase III subunit alpha n=62 Tax=Staphylococcus RepID=DPO3A_STAAS Length = 1065 Score = 972 bits (2513), Expect = 0.0, Method: Composition-based stats. Identities = 348/1155 (30%), Positives = 586/1155 (50%), Gaps = 97/1155 (8%) Query: 7 VHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIV 66 +L +H+ Y +++ K V+ A + + ALAITD L G KFY A IKPI Sbjct: 3 AYLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIF 62 Query: 67 GADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNE 126 G V L E VLA NN G ++L L S+ + + L + Sbjct: 63 GMTIYVTNGLNTVET---VVLAKNNDGLKDLYQLSSEIKMNALE----HVSFELLKRFSN 115 Query: 127 GLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAV 186 +I++ + + + + + + D + + Sbjct: 116 NMIII---------FKKVGDQHRDIVQVFETHNDTYMDHLSISIQ--------------- 151 Query: 187 ELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEM 246 G V +V + D D AI D LD ++ + +E+E+ Sbjct: 152 ------GRKHVWIQNVCYQTRQDADTISALAAIRDNTKLDLIHDQEDFGA--HFLTEKEI 203 Query: 247 CELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTG-DMSTEDYLVKRAKEGLEERLA 305 +L E L IA++C+ ++ + LPQ+ T D S + YL + L++ Sbjct: 204 NQL-DINQEYLTQVDVIAQKCDAELKYHQSLLPQYETPNDESAKKYLWRVLVTQLKK--- 259 Query: 306 FLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSG 365 Y ERL+ E +VI MGF YFLIV + I ++K N V VGPGRGS Sbjct: 260 --------LELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVMVGPGRGSS 311 Query: 366 AGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRD 425 AGSLV+Y L IT +DP++F+LLFERFLNPERV+MPD D+DF +R++VI++V + YG Sbjct: 312 AGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERVIQYVQEKYGEL 371 Query: 426 AVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIY 485 VS I+TFG + A+AV RDVGR++G ++ IS LIP G+TL +A++ + + Sbjct: 372 HVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLGITLDEAYQID-DFKKFV 430 Query: 486 EADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSD 545 + + + +KLEG+ R+ HA G++I + ++APL + G +TQ+ ++ Sbjct: 431 HRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTG--LLTQWTMTE 488 Query: 546 VEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSET 605 E GL+K DFLGLR L+II+ L + K N +DI IP DD+K F++L + +T Sbjct: 489 AERIGLLKIDFLGLRNLSIIHQILTQVKKDLGIN----IDIEKIPFDDQKVFELLSQGDT 544 Query: 606 TAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPD 665 T +FQLES G++ ++K+L+P+ FED++A+ +L+RPGP++ + +I R+H ++ Y Sbjct: 545 TGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEE--IPTYITRRHDPSKVQY-- 600 Query: 666 VQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRS 725 H L+P+L+ TYG+I+YQEQ+MQIA + ++ G AD+LRRAM KK + +R Sbjct: 601 ---LHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQ 657 Query: 726 VFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAA 785 F EGA++NG + +++ +IFDL+ KFA YGF ++H+ +Y+ ++Y +LK HYP F A Sbjct: 658 HFIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYAN 717 Query: 786 VMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGP 845 +++ + + +K +++E + G+ ILPP+IN + + + +G I IG IKGVG Sbjct: 718 ILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEG-IYLSIGTIKGVGYQS 776 Query: 846 IEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDA 905 ++ I++ R + G F++ FD R + R++LE LI+ GAFD G R+ L+ ++ Sbjct: 777 VKVIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQV 836 Query: 906 LKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHP 965 L + +F +L +Q Y + P+ ++ E+E LG Y++ HP Sbjct: 837 LDGDLNIEQD-----GFLFDIL-----TPKQMYEDKEELPDALISQYEKEYLGFYVSQHP 886 Query: 966 INQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGR 1025 +++ ++Y+ +L + + + + TK G + TL+D Sbjct: 887 VDK-KFVAKQYLTIFKLSNAQNNKP-----ILVQFDKVKQIRTKNGQNMAFVTLNDGIET 940 Query: 1026 LEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDI---DEAREKYAR 1082 L+ ++F + KY++LL + + IVSG+ FD ++ E+ + +E + +A+ Sbjct: 941 LDGVIFPNQFKKYEELLSHNDLFIVSGK--FDHRKQQRQLIINEIQTLATFEEQKLAFAK 998 Query: 1083 GLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRL 1142 + I + ++ + ++ + V L + + G ++ D + Sbjct: 999 QIIIR------NKSQIDMFEEMIKATKENANDVVLSFYDETIKQMTTLG---YINQKDSM 1049 Query: 1143 LNDLRGLIGSEQVEL 1157 N+ + L Sbjct: 1050 FNNFIQSFNPSDIRL 1064 >UniRef50_C5B539 DNA polymerase III, alpha subunit n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B539_METEA Length = 1316 Score = 971 bits (2511), Expect = 0.0, Method: Composition-based stats. Identities = 417/1197 (34%), Positives = 613/1197 (51%), Gaps = 102/1197 (8%) Query: 1 MSEPRFVHLRVHSDYSM---IDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAG 57 M++ FVHL V SD+S G++ LV +AAALG PALA+TD N+ G+ KF A Sbjct: 1 MTDRPFVHLNVLSDFSFSHGTRGVSGVKELVARAAALGQPALALTDDMNMFGVYKFSSAA 60 Query: 58 HGAGIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAA-GPII 116 G++PIVG V+ + + +LA++ TGY NL L+ A Sbjct: 61 AEKGVQPIVGTKIWVR-AGATNVFGTMQLLASSETGYVNLCRLLKVALFPDAEGRISAHK 119 Query: 117 DRDWL-------IELNEGLILLSGGRMGDVG--RSLLRGNSALVDECVAF------YEEH 161 DR ++ E ++ ++ LSGG+ G + R N+ + +++ Sbjct: 120 DRSYVQLGHLLNAEYSQDVVCLSGGKDGFMSRVWDAARQNAQGAADWLSWVEDPGGLAAV 179 Query: 162 FPDRYFLELIRTGRPDEE--SYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAI 219 F DR+F E+ R G +E + ++ A +G PVVAT V + DA EI A+ Sbjct: 180 FGDRFFFEICRNGVETDEDFAREAWLLDTAARQGRPVVATTQVLYAAEERHDALEILSAV 239 Query: 220 HDGF----TLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE 275 T+ + +MRS+ EM ELFAD+P A N +E+A+ V + Sbjct: 240 ARKENGSITVGPGTLRARVEARYHMRSDAEMRELFADLPTAYDNALEVARCTAFKVAKRK 299 Query: 276 YFLPQFPTGDMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQM 335 LP+F S + LV +A+ GLEER L + R EY +RLE EL VI +M Sbjct: 300 PRLPRFDAAGRSEREELVHQARTGLEERFGEL----GTSEEARQEYRDRLEFELGVIGKM 355 Query: 336 GFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPE 395 GF GYFLIV +FI+W+ + VPVGPGRGSGAGSLVAYAL+IT+LDPL F LLFERFLNP+ Sbjct: 356 GFDGYFLIVSDFIKWALAHDVPVGPGRGSGAGSLVAYALRITNLDPLRFGLLFERFLNPD 415 Query: 396 RVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVL------ 449 RVSMPDFD+DFC++ R V+++V + YG D VSQI +FG + +K I+D GRVL Sbjct: 416 RVSMPDFDIDFCIQGRASVVQYVRERYGSDLVSQIASFGEIKSKTAIKDAGRVLTHERDG 475 Query: 450 GHPYGFVDRISKLIPPDPG--MTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRN 507 + Y D ++KL+P G TL +A++ P L + +A E+ + L D ARK+EG+ R Sbjct: 476 SYGYSETDGMTKLVPMVQGNPYTLKRAYDEIPDLRQFVDASEKTRVLFDNARKIEGLLRQ 535 Query: 508 AGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINW 567 G HA G++I + + P+ + P+ QFD E GLVKFDFLGL TL+++ Sbjct: 536 RGVHAAGILIGDVPLEELLPVTWNATDGMPLAQFDLKGAEDVGLVKFDFLGLETLSVLKL 595 Query: 568 ALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDC 627 A + + R + LD IPLDD +++ R T A+FQ ES GMK ++ ++P Sbjct: 596 ARQYVKDSRGVD----LDFDKIPLDDAGVYEIFARGMTNAIFQFESGGMKRALREMKPTR 651 Query: 628 FEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQ 687 ED+IA AL+RPGP++ M+ + D K+GR+E YP+ + + KP+LE T+GI++YQ Sbjct: 652 IEDLIAANALYRPGPME--MIPVYNDCKNGRQEPDYPEPREKT---KPILEETFGIMVYQ 706 Query: 688 EQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDL 747 EQVM +A+ ++G TLG AD+LRRAMGKK EM Q++ F +GA ++G +A A ++FD Sbjct: 707 EQVMAVARAVAGLTLGQADLLRRAMGKKIKAEMDAQKAGFVKGALEHGTSARTAEELFDK 766 Query: 748 VEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADM--DNTEKVVGLVDECW 805 + KFA YGFNKSHSAAYAL++Y T WLK HYP EF AAV++ + +N ++ + ++ Sbjct: 767 IAKFAEYGFNKSHSAAYALIAYHTGWLKKHYPQEFYAAVLSFEAAKNNVHEMSLVKEDLD 826 Query: 806 RMGLKILPPDINSGLYHF---HVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFREL 862 G+ +LPPD+N F G I +G+ IKG+ G I+A++ R G FR + Sbjct: 827 AFGIPLLPPDVNRSTGQFAPERTEQGGAIRFGLVGIKGLSGG-IDAMVAEREANGPFRTV 885 Query: 863 FDLCARTDTKKLNRRVLEKLIMSGAFDRLGP--------HRAALMNSLGDALKAADQHAK 914 D RT NR +E L GAF L +RA + A + AK Sbjct: 886 ADFGRRT-AGLFNRSQIENLAAVGAFVGLPIVAGGPPETNRAKAAIAAQFFANGAKREAK 944 Query: 915 AEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIE 974 + Q +F E++ + S WP+ + D E +G Y HP+ + Sbjct: 945 STD--QFGLFAAEETAREELPEEMHSTAEWPD--IPDREFRAVGFYFDQHPLKMLRPRMA 1000 Query: 975 RY-----------VGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRS 1023 + G V E ++ R T+RG R+ D + Sbjct: 1001 KADLENEDVRVGTRGSVYEIMTARRESETRAVVVAMIENVRKTTTERGPRLD-VEASDTT 1059 Query: 1024 GRLEVMLFTDALDKYQQLLEKDRIL----------IVSGQVSFDDFSGGLKMTAREVMDI 1073 G ++ + + + L E +L V G++ + ++ +V Sbjct: 1060 GNYRFYVYPNRRGQVRTLDEMYAVLEAARGSRQPAAVLGRMVWQ--PDDPRLHVDDVQAA 1117 Query: 1074 DEAREKYARGLAISLTDRQID------------DQLLNRLRQSLEPHRSGTIPVHLY 1118 + YA + I L R+I Q + R LE G+ + Sbjct: 1118 KDYLAPYATDVRIDLDPRRIRLGMAEMGELRALQQTTSEARARLERAEPGSQEAQIR 1174 >UniRef50_C6XNZ2 DNA polymerase III, alpha subunit n=10 Tax=Bacteria RepID=C6XNZ2_HIRBI Length = 1096 Score = 971 bits (2510), Expect = 0.0, Method: Composition-based stats. Identities = 268/1081 (24%), Positives = 493/1081 (45%), Gaps = 56/1081 (5%) Query: 3 EPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGI 62 P++ L V +++S + G + V +A LG+ A+ I D L G+V+ + A G+ Sbjct: 10 TPQYAELAVTTNFSFLRGASHAEEFVAQAKNLGLSAIGIADRNTLAGVVRAHVAAKEHGV 69 Query: 63 KPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLI 122 + ++GA ++ + L + Y L+ L+S R I + +I Sbjct: 70 RLLIGARLDLTDGI------SLLCYPTDRAAYGRLSHLLSDGKMRAPKGEC-HISLENVI 122 Query: 123 ELNEG--LILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 180 +G I++ + V L+ + + ++ LI Sbjct: 123 AYADGQVFIVIPPMQPDAVFEEKLQILMEKFASSLEGSSPSPDKKIYMALIHQYGGKNRE 182 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 L LA LP++ATN+V + SS +I I + +L+D + ++++ Sbjct: 183 RLAQIAALASKYNLPLIATNNVLYHVSSRRPLQDILTCIREHVSLEDAGYLLEPNAERHL 242 Query: 241 RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKRAKEG 299 +S EM LF EA+ +T +I + C ++ Y P P + +++L+ A +G Sbjct: 243 KSPSEMVRLFHGFKEAIEHTQKIVEACQFSLDELRYEYPDEPVPRGKTPQEHLIDIAWKG 302 Query: 300 LEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVG 359 E R P++ + L EL +I ++ YFL V + ++W+++ + Sbjct: 303 AEWRYPEGVPEK---------VQKSLNYELGLIGELHVAQYFLTVHDIVKWAREQEIL-C 352 Query: 360 PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVA 419 GRGS A S V Y L IT +DP DLLF+RFL+ ER PD DVDF E+R++VI++V Sbjct: 353 QGRGSAANSAVCYCLGITSVDPKVNDLLFDRFLSRERKEPPDIDVDFEHERREEVIQYVY 412 Query: 420 DMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEP 479 + YGR + T + ++ +R+V + G ++K G T++ E Sbjct: 413 ERYGRHRAALTATVISYRPRSAVREVCKAFGLSEDVATALAKTNWGAYGKTISDKQAGES 472 Query: 480 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 539 + +E ++ ++ R+L G R+ +H GG V+ + + P+ + Sbjct: 473 ---GLDPRNETIQRVLHFTRQLIGFPRHLSQHVGGFVLTQGPLVETVPIGNAAMDERTFI 529 Query: 540 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 599 ++DK D++ G++K D L L L+ I +M+ + ++A +P DD +DM Sbjct: 530 EWDKDDIDALGIMKVDILALGMLSCIRKCFDMLRLYKGLEY----NLATVPQDDPAVYDM 585 Query: 600 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 659 L ++++ VFQ+ESR ++ RL+P F D++ VA+ RPGP+Q MV ++ R+ E Sbjct: 586 LCKADSVGVFQVESRAQMSMLPRLRPRVFYDLVIEVAIVRPGPIQGDMVHPYLRRRKRIE 645 Query: 660 EISYPDVQWQH---ESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMG-KK 715 + YP +H + L+ +L+ T G+ L+QEQ MQ+A + +T A+ LR+AM + Sbjct: 646 TVRYPSPAPEHGPPDELENILKRTLGVPLFQEQAMQVAIDAAKFTPDEANGLRKAMATFR 705 Query: 716 KPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 775 + M F G G + A F+ V+ F YGF +SH+A++AL+ Y + WLK Sbjct: 706 RNGTMGLYEDKFINGLTNRGYKPDFAQACFNQVKGFGDYGFPESHAASFALLVYVSSWLK 765 Query: 776 AHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDG----EI 831 H+P F AA++ + LV + +++ PPD+N + + + Sbjct: 766 CHHPEVFCAAILNSQPMGFYAPAQLVRDAREHDVEVRPPDVNYSDWDSLLEPKEDGTFAV 825 Query: 832 VYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRL 891 G+ I+G+ E I+ +++ R G + L RT L R LE+L + AF + Sbjct: 826 RLGLRQIEGLSETHIQTLMDRRQDG--YYTPEILRQRT---GLPRGALERLAAADAFRSM 880 Query: 892 GPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLD 951 G R + ++ +++F A + EQ ++ P + Sbjct: 881 GLDRREALWAIRG----------QTQEAPSELFACSATK-EQGREAEVKLPEMPMSEHVI 929 Query: 952 GERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRG 1011 + L L HP++ + R +G K+++ G + G+V+ + T G Sbjct: 930 QDYHATRLSLKAHPVSFLRERYSR-MGIRTTKEIYELRSGSRVMVGGVVLVRQRPGTASG 988 Query: 1012 NRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVM 1071 + TL+D +G ++++ +++++ ++ ++ V G+V D + A E++ Sbjct: 989 --VVFVTLEDETGVANLIVWPKVMERFRPIVMGAYLIAVKGRVQTAD--NVTHILAEEII 1044 Query: 1072 D 1072 D Sbjct: 1045 D 1045 >UniRef50_C2E227 Possible DNA-directed DNA polymerase n=9 Tax=Lactobacillus RepID=C2E227_9LACO Length = 1040 Score = 970 bits (2507), Expect = 0.0, Method: Composition-based stats. Identities = 345/1059 (32%), Positives = 542/1059 (51%), Gaps = 46/1059 (4%) Query: 9 LRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA 68 L+ S +S++ LVK A G +LA+TD GLV FY A +KP++G Sbjct: 7 LQTLSSFSLLKSPILIDDLVKDAVDKGYSSLALTDINVTYGLVDFYLAAKKVNLKPLLGM 66 Query: 69 DFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA-AGPIIDRDWLIELNEG 127 + + L +A NN GY+N+ L S + ++ L + Sbjct: 67 TIRLNGIVDQAHRYDLISIAKNNQGYKNILRLSSAINLKTDNGDERKVLTLKQLAKYLSD 126 Query: 128 LILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVE 187 + + + R L N L + + ++ P L L + Y+ A Sbjct: 127 QVFIVPANITSELRYLAENNEKLGSDFIRELQKIIPSSSDLYLGA-YAGKNQPYIDYAKS 185 Query: 188 LAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMC 247 +A+ LP+ AT DV+++ +SD + AI G L D Y+R+ E+ Sbjct: 186 MAKQFNLPLAATEDVQYLQASDHFLVKTLRAIEQGQKLVDTSSLALQKGSHYLRTSGELV 245 Query: 248 ELFAD--IPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKRAKEGLEERL 304 + + I AL N +IA C +V + LP++ ++ YL + ++GL +R Sbjct: 246 SAYNECSILSALHNAAKIADECKASVTFTQPELPKYKQSFAPDSKIYLRQLVQKGLAKRF 305 Query: 305 AFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGS 364 Y +RL+ EL++I+QMGF YFLIV + I ++ + GPGRGS Sbjct: 306 --------NGQPIPEIYQKRLDYELKIIDQMGFDDYFLIVWDVINYAHSVDITTGPGRGS 357 Query: 365 GAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGR 424 AGSLVAY+L IT++DP++++LLFERFLNP R MPD D+D +RD++I+++ + YG Sbjct: 358 AAGSLVAYSLAITEVDPIKYNLLFERFLNPARAQMPDIDLDIPDNRRDEIIKYMFEKYGM 417 Query: 425 DAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP-DPGMTLAKAFEAEPQLPE 483 D +QI+TFGT+AAK +RD RV G + + IP +TLA+A++ L Sbjct: 418 DHAAQILTFGTLAAKQALRDCARVFGLTTIQASKFTHAIPFSKSKITLAQAYQESKALQL 477 Query: 484 IYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDK 543 + A E K L A +LEG+ R+A HA G+VI+ I A L G PVTQ K Sbjct: 478 LVNASELNKLLFKTAMRLEGIPRHASIHAAGLVISDKSIAQIAGLQAGTLG-IPVTQQTK 536 Query: 544 SDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRS 603 + VE GL+K DFLGLR LTI+ +E++ K LD IPLDD K+ + Q+ Sbjct: 537 AHVEELGLLKIDFLGLRNLTILGDTIELLAKDG-----IKLDPKRIPLDDIKTLQLFQKG 591 Query: 604 ETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISY 663 +T AVFQ ES+G+K++++RL PD FED++A+ AL+RPGP+Q +D+FI+RK G+E I+Y Sbjct: 592 KTDAVFQFESQGIKNVLRRLHPDSFEDVVAVNALYRPGPIQ--NIDHFINRKQGKEPITY 649 Query: 664 PDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQ 723 PD SL +L+PTYGI++YQEQVMQ AQ+++G++LG AD+LRRAM KKK + + ++ Sbjct: 650 PDS-----SLAKLLQPTYGILVYQEQVMQTAQIMAGFSLGEADLLRRAMSKKKQDLIDQE 704 Query: 724 RSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFM 783 R F GA KNG A K++ +E+FA YGFN+SH+ AY+ +++ +LK HYPA F Sbjct: 705 REKFIAGAVKNGHPQATASKVYAYIEQFANYGFNRSHAVAYSKIAFWLAYLKVHYPAAFF 764 Query: 784 AAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGE 843 A++ + N K + + G+KIL PDIN+ +++ +G+I G+ AIKG+ Sbjct: 765 TALLNSVSANRVKAGEYITQAQEAGVKILAPDINNSQTDYYLV-NGQIQVGLKAIKGLRV 823 Query: 844 GPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLG 903 + I F L D + D K L+ + + +I +G FD++ +R L+ + Sbjct: 824 DFLRNIA---GLPKNFTSLADFLRKIDAKFLSEQAIAAMIKAGCFDKIDENRKMLLANCK 880 Query: 904 DALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTG 963 + ++ + E + E E LG T Sbjct: 881 EIVENIKFTGQNETL-----------SEGLGGIRLEQAPAPNSNEKATMEEEVLGFSTTK 929 Query: 964 HPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRS 1023 PI K ER+ + ++ + A G ++ +++ TK+G+ + T D S Sbjct: 930 TPILVVQKYAERF----NAQALNSFTVNETGIAVGKLIKLKLIRTKKGDTMAFSTFRDAS 985 Query: 1024 GRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGG 1062 E+ +F + +L++ +I ++ + D + G Sbjct: 986 SEQEITIFPGIYNNISNILKEGQIYLLGIRTQSDRYDAG 1024 >UniRef50_D0LSK7 DNA polymerase III, alpha subunit n=2 Tax=Nannocystineae RepID=D0LSK7_HALO1 Length = 1074 Score = 969 bits (2505), Expect = 0.0, Method: Composition-based stats. Identities = 303/1126 (26%), Positives = 506/1126 (44%), Gaps = 102/1126 (9%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS + L S++S ++G + L+++A ALG+ ALA++D L G+V+ + Sbjct: 1 MST--YAPLWCKSNFSFLEGASHPDELIEEAHALGLRALALSDRDGLYGVVRAHVCAEKI 58 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 G K I GA +V D+ + + +L + GY NL L++K +R + + Sbjct: 59 GFKLIHGAQVSV------DDGSQIVLLCRDRAGYANLCHLLTKGRRRSDKGSS-QVSWRE 111 Query: 121 LIELNEGLILLSGGRMG---------------DVGRSLLRGNSALVDECVAFYEEHFPDR 165 + GLI L GG D+ R L + + E F D Sbjct: 112 VCAHAGGLIALWGGAGSLLTRPGENRPGGVPADIPRPLGGRPQSYLGRVADDLREAFGDA 171 Query: 166 YFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTL 225 + R +E AE GLPV A +V + + ++ + TL Sbjct: 172 LYALCARHREAEEVVTEARLRARAERFGLPVAAAVEVLYHSRARRPLQDVLTCLRHHVTL 231 Query: 226 DDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGD 285 R + + + S + LF D P A+A T++IA RC + Y P Sbjct: 232 STAGRYIRANDEHDLHSPQAFGILFDDDPAAVARTLDIAARCQFGLGEIRYRYPSERLPS 291 Query: 286 M-STEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIV 344 +T ++L + + EG R P + +L EL +I+++ + GYFL + Sbjct: 292 GKTTSEWLRELSFEGARWRYRGEVP---------ADVRAQLTRELALIDELDYGGYFLTM 342 Query: 345 MEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDV 404 E +++ + G+ GRGS A S V Y L IT +DP+ LLFERFL+ ER PD D+ Sbjct: 343 YEIVRFCRAQGIL-CQGRGSAANSAVCYCLDITAVDPVRMGLLFERFLSRERAEPPDIDL 401 Query: 405 DFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIP 464 D ++R++VI+HV D YGRD + + ++ +RDVG+VLG P +DR +KL+ Sbjct: 402 DIEHDRREEVIQHVYDKYGRDHAAMVAVVIRYRPRSAVRDVGKVLGIPATSLDRCAKLLS 461 Query: 465 PDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524 G+T A+A E + + L +A ++ R+ H GG ++ + Sbjct: 462 HYEGIT-AEALEQ----AGMDPHLPAHQHLGRLASEILDFPRHLSIHPGGFLLGHEPVHS 516 Query: 525 FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584 P+ V Q+DK+D+E GL K D LGL L ++ +++++ R + L Sbjct: 517 LVPIENGAMAGRTVIQWDKNDLEDLGLFKVDLLGLGALNQLHRCFDLVSEHRGID----L 572 Query: 585 DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644 +A IP DD ++DM+ R++T VFQ+ESR ++ RL+P F D++ V++ RPGP+ Sbjct: 573 SMATIPADDTATYDMICRADTVGVFQIESRAQMSMLPRLRPRYFYDLVIEVSIVRPGPIT 632 Query: 645 SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704 GMV ++ R+HG E+I YP HESL+PVLE T G+ L+QEQVM++A V + YT G Sbjct: 633 GGMVHPYLRRRHGLEKIEYP-----HESLEPVLERTLGVPLFQEQVMRLAMVAADYTPGE 687 Query: 705 ADMLRRAMGK-KKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAA 763 AD LRR M ++ + + R + GI AE A ++F+ + F YGF +SH+A+ Sbjct: 688 ADQLRRDMAAWRRSGRIDQHRERLVSAMTRKGIAAEFAERVFEQIRGFGEYGFPESHAAS 747 Query: 764 YALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHF 823 +AL++Y T +++ H+PAE+ A++ A ++++ R G+ + P D+ + + Sbjct: 748 FALIAYATAYMRCHFPAEYACALLNAQPMGFYSPATIINDARRHGVSVRPIDVGASAWDC 807 Query: 824 HV-----------NDDG---------------EIVYGIGAIKGVGEGPIEAIIEARNKGG 857 + ++G I G+ +KG+ I +AR Sbjct: 808 TLEPLPASQRRTTEENGDSGDSDSDAPARICYAIRMGLRYVKGLRRDAGTRIEDAR-ARA 866 Query: 858 YFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEA 917 F +L D RT +L+ R +L SGA G +R ++ + +A Sbjct: 867 PFADLGDFVRRT---RLDERSHTRLAESGALAAFGRNRRDVLWQVRGHQRAKSDTLSLPQ 923 Query: 918 IGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYV 977 G S + + + + GHP+ + R Sbjct: 924 TG-----------------PAPSLAQLDQLDEILWDYQASLHSTRGHPLEPLRASL-RAQ 965 Query: 978 GGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDK 1037 + + G+ + AGLV+ + T G + TL+D SG + ++++ Sbjct: 966 NIADARSVQRMRHGQRLRYAGLVICRQRPPTAAG--VTFMTLEDESGFVNLVIWQQVWAS 1023 Query: 1038 YQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARG 1083 Y L + L VSG+V ++ G + + + R Sbjct: 1024 YGVLAKSTAFLGVSGRVQAEE--GLVHLVVESLWTPQVVRGDGVPP 1067 >UniRef50_D1BHX7 DNA polymerase III, alpha subunit n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BHX7_SANKS Length = 1117 Score = 968 bits (2503), Expect = 0.0, Method: Composition-based stats. Identities = 312/1149 (27%), Positives = 504/1149 (43%), Gaps = 105/1149 (9%) Query: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61 + P + L HS +S +DG + L +A LG+ ALA+TD L G+V+F A G Sbjct: 9 ARPEYAELHAHSAFSFLDGANQPEELAAEAYRLGLTALALTDHDGLYGVVRFAEAARQLG 68 Query: 62 IKPIVGADFNVQC---------DLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAA 112 + I GA+ ++ + HL VLA GY+NL+ I++ + Sbjct: 69 LPTIFGAELHLPDAVGTLDAPTGVPDPRSEHLLVLARGPQGYRNLSSAIAEGHLSTGRKG 128 Query: 113 GPIIDRDWLIELNEG-LILLSGGRMGDVGRSLLRG---NSALVDECVAFYEEHFP-DRYF 167 + L +G ++L+G R G V +L G + + F D Sbjct: 129 AADHSLEELGARADGQWLVLTGCRKGAVRSALGSGPTWDPRGAATQLDRLVATFGRDNVA 188 Query: 168 LELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDD 227 +E+ TG P ++ LA A + +VAT + D D A+ +LDD Sbjct: 189 VEVTSTGDPYDDERNEHLAALAHAARVDLVATTAAHYAHPRDADLAAALAAVRARSSLDD 248 Query: 228 PKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMS 287 +P ++RS EM + PEA+ + C + L LP +P Sbjct: 249 MDGWLPGAPSAHLRSAGEMLARHSAHPEAVTAAARLGAECAFDLSLVAPNLPPYPVPAGH 308 Query: 288 TED-YLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVME 346 TE +L + + G R +R P +++ EL++I + FPGYFL+V + Sbjct: 309 TEATWLRELVRRGALHRYG------PRESERVPGAYAQIDRELRIIEDLTFPGYFLVVYD 362 Query: 347 FIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 406 +++ + NG+ GRGS A S V YAL IT +D + LLFERFL PER PD DVD Sbjct: 363 LVEFCRVNGIL-AQGRGSAANSAVCYALGITAVDAVAHGLLFERFLAPERDGPPDIDVDI 421 Query: 407 CMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPD 466 ++R++VI+HV D +GR +Q+ + ++ +RD R LG+ G D SK I Sbjct: 422 ESQRREEVIQHVFDTFGRRHAAQVANVISYRPRSAVRDAARALGYDTGQQDAWSKQIERW 481 Query: 467 --------------PGMTLAK---AFEAEPQLPE-------------------------- 483 GM K A E ++ + Sbjct: 482 GSLRPAPPSPEAVAAGMPEGKPYGALEQRERIRDPLVEPTARDDRAMAREGMWVKGGHAP 541 Query: 484 IYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDK 543 + ++ A++D+A + + R+ G H+GG+V+ + + P+ V Q+DK Sbjct: 542 QRDTEDIPDAVVDLAERFLRLPRHLGIHSGGMVMCDRPVIEVCPVEWARMPGRTVLQWDK 601 Query: 544 SDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRS 603 D AGLVKFD LGL LT + A E ++ L + +P +D + +L + Sbjct: 602 EDCADAGLVKFDLLGLGMLTALRIAFEQVSTHEGVE----LTLHGLPQEDPGVYRLLCAA 657 Query: 604 ETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISY 663 +T VFQ+ESR + RLQPDCF D++ VAL RPGP+Q V +I RK GRE+++Y Sbjct: 658 DTIGVFQVESRAQISTLPRLQPDCFYDIVIEVALIRPGPIQGNSVHPYIARKRGREKVTY 717 Query: 664 PDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKP-EEMAK 722 H L+ L T G+ L+QEQ+MQ++ L+ +T AD LRRAMG K+ E+M Sbjct: 718 -----LHPLLEKSLGKTLGVPLFQEQLMQMSIDLADFTPTEADALRRAMGSKRSTEKMEA 772 Query: 723 QRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEF 782 G EK GI+ +IFD ++ FA +GF +SH+ ++A + Y + WLK H+P F Sbjct: 773 LHERLLSGMEKKGIDRVAGEEIFDKLKGFADFGFPESHAYSFAYLVYASAWLKVHHPEAF 832 Query: 783 MAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDG------EIVYGIG 836 A ++ A LV + R + +L PD+ + V + G+ Sbjct: 833 YAGLLAAQPMGFYSPQSLVADARRHDVPVLRPDLLASQPQAAVEPAPGSARGLAVRLGLA 892 Query: 837 AIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRA 896 +++ V E ++ R + G F +L DL R +L LE L +GA D LG R Sbjct: 893 SVRTVTTEVAERLVAERTEHGPFLDLRDLARRV---RLTTAQLEALATAGALDCLGVERR 949 Query: 897 ALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERET 956 + + G + ++G S E + + Sbjct: 950 EALWAAGALAQERPDTLPGVSVG----------------VSAPMLPGMSEVETAVADTWS 993 Query: 957 LGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGI 1016 G+ +P + R G + +++ E G+ + G+V + T RG + Sbjct: 994 TGVTTESYPTQYARPGLVR-AGAITVEECRTAEEGRRVAVGGVVTHRQRPGTARG--VTF 1050 Query: 1017 CTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEA 1076 +L+D +G+L V+ +++++ L+V G++ +D G + A + + Sbjct: 1051 LSLEDETGQLNVICSPGLWQRFRRVARTSAALVVRGRLERND--GATNLVAEHLSALSLQ 1108 Query: 1077 REKYARGLA 1085 +R Sbjct: 1109 VTTTSRDFQ 1117 >UniRef50_B1ZZZ1 DNA polymerase III, alpha subunit n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZZZ1_OPITP Length = 1116 Score = 968 bits (2502), Expect = 0.0, Method: Composition-based stats. Identities = 321/1137 (28%), Positives = 525/1137 (46%), Gaps = 99/1137 (8%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS +V L S +S + G ++ L +AA LG+PALAI D + + Y A Sbjct: 7 MS--DYVELHASSAFSFLRGASQPEDLAAEAARLGLPALAIADRDGVYAAARLYQAAREL 64 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQR--------GYGAA 112 ++ IVGA+ + ++ T L +L N TGY NL LIS A + Sbjct: 65 QLRAIVGAEVTL------EDGTALPLLVTNGTGYANLCRLISTAKLEPREAAVVEAWRRE 118 Query: 113 GPIID------------------RDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDEC 154 P++ L E EGLI L+G G V + + Sbjct: 119 HPLVTPADSHEDPRARKRPCFATWRELAEHAEGLIALTGDEDGPVLSAWRNRGADAAAAV 178 Query: 155 VAFYEEHFP-DRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAH 213 A + F DR ++EL R + E++ L +LA AR LP++AT VR+ ++ Sbjct: 179 AARLQTIFGADRLYVELQRRRQRGEDTALCFLADLAAARQLPLLATGGVRYATRAERPIA 238 Query: 214 EIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRL 273 ++ + + TLD R + + ++++RS M ELF D PEA+ N++ +A+R + T++ Sbjct: 239 DVFTCLREHTTLDAAGRLLSPNAERHLRSGRAMAELFQDYPEAVVNSLRLAERLDFTLQN 298 Query: 274 GEYFLPQFPT-GDMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVI 332 +Y P FP + E L ++ G ER+ L P +L+ EL +I Sbjct: 299 LDYRFPDFPVGPGETMESVLREQTYAGARERIGELTPK----------LRAQLDRELAMI 348 Query: 333 NQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFL 392 N++GFPGYFLIV + QW G+ + GRGS A S V YAL IT ++PL + LLFERFL Sbjct: 349 NKLGFPGYFLIVWDICQWCHQRGILI-QGRGSAANSAVCYALGITAVNPLRYRLLFERFL 407 Query: 393 NPERV------SMPDFDVDF-CMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDV 445 + RV S PD D+D + R+ VI+ + Y + + T ++ R++ Sbjct: 408 SEGRVGKDGHPSWPDIDLDLPSGDLRESVIQEIYQRYAPRGAAMVANVITYRGRSAAREI 467 Query: 446 GRVLGHPYGFVDRISKLIPP-DPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGV 504 G+VLG P +DR S L D TL + +L + + A++ + R+++G+ Sbjct: 468 GKVLGLPGDVLDRFSALYANGDFPHTLD--LAQQVKLSGLPGGHPRLPAMLALYRQMQGL 525 Query: 505 TRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTI 564 R+ G+H+GG+V P ++ P+ V Q+DK D E GLVK DFLGL + + Sbjct: 526 PRHLGQHSGGMVFCPNRLDRVVPIENASMEGRRVVQWDKDDCEELGLVKVDFLGLGMMAV 585 Query: 565 INWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQ 624 + A + +R PL + +P +D ++ ++R++T VFQ+ESR + + RLQ Sbjct: 586 LQDAFALCTQRG-----EPLTLHTVPPEDPETLATIRRADTIGVFQVESRAQQATLPRLQ 640 Query: 625 PDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGII 684 P F D+ V++ RPGP+ + I R+ G E++ Y D +H +KP+LE T+G+I Sbjct: 641 PQNFYDVAIAVSIVRPGPIAGRVSHPLIKRRAGEEKVVYLDESVEH-LMKPILERTWGVI 699 Query: 685 LYQEQVMQIAQVLSGYTLGGADMLRRAMGK-KKPEEMAKQRSVFAEGAEKNGINAELAMK 743 L+QEQ+++ A VL+G++ A+ LRRA G + + K G G + + K Sbjct: 700 LFQEQMLETAMVLAGFSGAQAEELRRAFGFNRNTARLRKVVEQLQLGMRARGHSEAVVQK 759 Query: 744 IFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDE 803 + + FAGYGF +SH+ ++AL++Y + WLK H PAEF A+++ L+ + Sbjct: 760 VLESSTTFAGYGFPESHAISFALLAYASTWLKVHRPAEFTASLLNNQPMGFYSPATLIQD 819 Query: 804 CWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELF 863 R GLK+ + + V D I G+ +KG+ E + A++ R F + Sbjct: 820 ARRHGLKVKAGCVQRSSWECTVEADDTIRIGLRYVKGLREANVRAMLAQRAAR-AFTSID 878 Query: 864 DLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKA--------------- 908 D ART RR L GA L HR A + + A A Sbjct: 879 DWLARTSFSAAERRAL---AAVGALRTLASHRRAALWQVEAAWSAEETLLQQAGQESSGT 935 Query: 909 ---------ADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 959 D + I M + ++ P + + + L Sbjct: 936 GVSPVESTPGDTTKEDRQIITKRMPESTDMGGTLMPRTATPLAPMTPAERMHADFRGMNL 995 Query: 960 YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTL 1019 + HP+ ER R D+ G+ + AG V+ + T +G +L Sbjct: 996 TVGTHPMALVR---ERLPDVWRAADLPLGRDGERVKVAGSVICRQRPGTAKG--FVFVSL 1050 Query: 1020 DDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEA 1076 +D +G V+++ D ++ + + ++ L + G++ D G + + A + ++ A Sbjct: 1051 EDETGIANVVVYPDLFEQRRMTINEEPALCIVGRMQSD--RGVIHVKAETIEALNLA 1105 >UniRef50_Q7UXK9 Error-prone DNA polymerase n=1 Tax=Rhodopirellula baltica RepID=DNAE2_RHOBA Length = 1145 Score = 967 bits (2500), Expect = 0.0, Method: Composition-based stats. Identities = 285/1085 (26%), Positives = 507/1085 (46%), Gaps = 70/1085 (6%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 R+V L S++S +DG + LV++AA LG LAITD ++ G+V+ + G++ Sbjct: 104 RYVELHCRSNFSFLDGASHPDELVQRAAELGYEGLAITDRESIAGVVRGFSPAQELGLQY 163 Query: 65 IVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL 124 IVG + + + + + Y + ++S R + + + E Sbjct: 164 IVGTEV------HPTDAPPMVLWPTDRAAYGRMCRMLSTGRMRCEKGRCE-LSFEDIAEH 216 Query: 125 NEGLILLSGGRMGDVGRSLLRGNSALVDECVA-FYEEHFPDRYFLELIRTGRPDEESYLH 183 +G++ + + + + + F DR +L D+ + Sbjct: 217 AQGILAGVIATDESRSIEDQHAHVNDSRQFLRGPFRDVFDDRGYLLASFHRGVDDAAKAT 276 Query: 184 AAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSE 243 L+ A +P++A DVR+ + H+ VAI G +++ + R + Q ++RS Sbjct: 277 WLRNLSLATDVPLLACGDVRYHSAERMALHDCVVAISQGKSVEQIQSDRLVNSQHHLRSL 336 Query: 244 EEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKRAKEGLEE 302 EE+ EL+ D+P+A+A T+E+A+RC T+ +Y P + + ++L + EG Sbjct: 337 EEIAELYRDVPDAVARTIEVAQRCTFTLDQLKYEYPVELAPEGMTPIEHLKRLTWEGARG 396 Query: 303 RLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGR 362 R P++ E L E+ +I + + YFL V + +++++ + GR Sbjct: 397 RWPNGVPEK---------VIETLRHEVTLIEDLQYEAYFLTVWDLVRFARSQEIL-CQGR 446 Query: 363 GSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMY 422 GS A S+V Y L IT +DP DLLFERF++ ER PD DVDF ++R++V++++ + Y Sbjct: 447 GSAANSVVCYCLGITSVDPTHTDLLFERFISRERGEAPDIDVDFEHQRREEVLQYLYEKY 506 Query: 423 GRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLP 482 GRD AK+ IR+VG+ L +D ++K LA ++ P+LP Sbjct: 507 GRDRAGMTAVVTCYRAKSAIREVGKALAISPDIIDAVAK---------LAGSYSRNPELP 557 Query: 483 E------IYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKH 536 E + + + + L G R+ +H GG+V+ + + Sbjct: 558 ERCRDAGLDPDTPLGRRFLYLTETLIGFPRHLSQHVGGMVMTAGSLCELCVTENAAMPGR 617 Query: 537 PVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKS 596 V Q++K D++ G++K D L L L+ I E++ + L ++ IP DD + Sbjct: 618 SVIQWNKDDLDDIGILKVDILALGMLSAIRRCFELVKDHHNRE----LSLSTIPPDDTPT 673 Query: 597 FDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKH 656 +DM+ ++T VFQ+ESR ++ RL+P C+ D++ VA+ RPGP+Q MV F+ + Sbjct: 674 YDMICAADTMGVFQIESRAQMSMLPRLKPRCYYDLVIEVAIVRPGPIQGNMVHPFLAARE 733 Query: 657 GREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK-K 715 YP +++++ VLE T G+ ++QEQ M++A V +G+T G AD LRRAM + Sbjct: 734 NPAAAKYP-----NDAIRKVLEKTLGVPIFQEQAMKLAVVAAGFTPGEADQLRRAMAAWR 788 Query: 716 KPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 775 +P + + R+ EG + NG+N E A +F + F YGF +SH+A++AL+ Y + +LK Sbjct: 789 RPGVIDRFRTKLLEGMKANGLNGEFAENVFRQIRGFGEYGFPESHAASFALLVYASCYLK 848 Query: 776 AHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDD-----GE 830 HYP F AA++ + L+ + + G+++LP DIN + D + Sbjct: 849 RHYPTAFCAALLDSQPMGFYAPAQLIRDAQQHGVQVLPVDINDSNIRSKLIPDLNRPHPK 908 Query: 831 IVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDR 890 + G+ ++G+ + II AR+ G F L DL R KL+R + L + A Sbjct: 909 LRLGLQMVRGLPSAVAQKIIVARDANGPFANLHDLTTRA---KLSRSNIATLADADALAS 965 Query: 891 LGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVL 950 + R A + A+ ++ + L + E+ + Sbjct: 966 IAQDRRAAVW---------QSLAQDDSGDSMPLLADLEPDCSVPEELVP----MSPAEEV 1012 Query: 951 DGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKR 1010 + T GL L HP++ + ++ R D+ G + AGLV+ + T + Sbjct: 1013 KNDYATTGLSLKAHPVSFWRDDLNALR-CKRASDLPKLRDGVHVRVAGLVLMRQRPGTAK 1071 Query: 1011 GNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREV 1070 G I T++D +G + ++LF ++ ++ IV G++ G + + V Sbjct: 1072 G--ITFVTMEDETGSMNLVLFAQVWKRFFKIARGSDAWIVDGKLENKK--GVIHVIVGRV 1127 Query: 1071 MDIDE 1075 D+ E Sbjct: 1128 EDLSE 1132 >UniRef50_Q1YPP6 DNA polymerase III, alpha subunit, putative n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YPP6_9GAMM Length = 1048 Score = 963 bits (2489), Expect = 0.0, Method: Composition-based stats. Identities = 286/1113 (25%), Positives = 501/1113 (45%), Gaps = 98/1113 (8%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS + L S+++ + G + LVK+A+ L A+AITD +L G+VK + A Sbjct: 1 MS---YAELHCISNFTFLRGASHPHELVKRASDLNYSAIAITDECSLAGVVKAHVAAIDH 57 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 K I+G++F + + L LA N Y L+ LI+ A +RG + + D Sbjct: 58 DFKLIIGSEFRL-------DGHKLIALAPNRQAYSELSALITLARRRGDKGSYQLDWNDL 110 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 180 L L++ + DV + F DR ++ + + + Sbjct: 111 EGNLRNALLIWLPSQQLDVDH-----------QRGEQLSNWFKDRLWVGITHLLSGHDAN 159 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 + LA LP+VA DV + AIH ++ + R + ++++ Sbjct: 160 DYYYYRNLAAMWQLPMVACGDVHMHSRQRQPLQDTLTAIHHNCSVMQLGQRRFANSERHL 219 Query: 241 RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKRAKEG 299 R ++ +L+ L T+ IAKRC+ ++ Y P + + + L ++G Sbjct: 220 RGLNQLQKLYPGA--LLRETLNIAKRCHFSLEELRYEYPSEVVPEHLTATEQLRFLVEQG 277 Query: 300 LEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVG 359 + +R +++E ELQVI ++ + YFL V + + +++ + Sbjct: 278 VAKRWPNGI---------SQSIRKQIEYELQVIAELNYESYFLTVEDIVAFARSRNIL-C 327 Query: 360 PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVA 419 GRGS A S+V Y L IT++ P + LLFERF++ ER PD DVDF ++R++VI+++ Sbjct: 328 QGRGSAANSVVCYCLFITEVAPDQISLLFERFISRERNEPPDIDVDFEHQRREEVIQYIY 387 Query: 420 DMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI-PPDPGMTLAKAFEAE 478 YGR + T + ++ +RDVG+ LG F++++S+ + D L F+ + Sbjct: 388 QKYGRQRAALAATVISYRPRSAVRDVGKALGLDALFIEQLSQSMSWWDRQADLQALFQQQ 447 Query: 479 PQLPEIYEADEEVKA---------------LIDMARKLEGVTRNAGKHAGGVVIAPTKIT 523 E +++ + + ++ G R+ +H GG +I + I+ Sbjct: 448 GGSQEKKNQEKKNQEKKNQEENSQGQIATHFFKLLNEILGFPRHLSQHVGGFIITKSPIS 507 Query: 524 DFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPP 583 P+ + V Q+DK D+E GL+K D L L L+ ++ ++I++ + N Sbjct: 508 TLVPVVNASMAERTVIQWDKYDIEALGLLKIDVLALGMLSAVHRCFDLISQHQQIN---- 563 Query: 584 LDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPL 643 L + +IP DD ++DML +++ VFQ+ESR ++ RL+P CF D++ +A+ RPGP+ Sbjct: 564 LTMQSIPKDDPATYDMLCTADSVGVFQIESRAQMAMLPRLKPRCFYDLVIEIAIVRPGPI 623 Query: 644 QSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLG 703 Q GMV ++ R+ G E + YP +K VLE T GI ++QEQV+++A V +G++ G Sbjct: 624 QGGMVHPYLRRRQGLETVDYPSQ-----EIKSVLERTLGIPVFQEQVIRLAMVAAGFSGG 678 Query: 704 GADMLRRAM------GKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFN 757 AD LRRAM G K +A+ +G G + + A ++F ++ F YGF Sbjct: 679 QADQLRRAMASSGKSGSGKNSTLAQFEQKLTDGMMARGYSLDFAERLFKQIQGFGVYGFP 738 Query: 758 KSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDIN 817 +SHSA++AL++Y + WLK H+PA F A++ + L+ + R ++I P D+ Sbjct: 739 ESHSASFALLAYVSAWLKCHHPAAFCCALLNSQPMGFYTPSQLLQDAQRHQIEIRPIDVC 798 Query: 818 SGLYHFHVN---------DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGY-FRELFDLCA 867 + + + I G+ IKG E I+ AR+ F L L Sbjct: 799 HSDWEHSLEMGSLEAGSSTEPAIRLGLCLIKGFSYRAAERIVLARSNSQQGFNSLPQLSR 858 Query: 868 RTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVL 927 L++ L L +GA L +R L Sbjct: 859 ---AAGLSQADLALLSSAGALRSLTSNRRQAHWDALAIEDYR----------------PL 899 Query: 928 AEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHP 987 E + E A E L+ + + G+ L HP+ ++ + R D+ Sbjct: 900 LEPAQNSESLPAILSTPSEIEELNADYSSTGVSLGRHPMEILREQSKTLQRCKRTIDLPT 959 Query: 988 TERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRI 1047 + + AGLV + T G + TL+D +G ++++T ++ ++ L K + Sbjct: 960 LGNRRFVRIAGLVTGRQRPGTASG--VIFLTLEDETGNSNIVVWTTVQERCREALLKGSL 1017 Query: 1048 LIVSGQVSFDDFSGGLKMTAREVMDIDEAREKY 1080 L+V G V D + + A+E+ D + Sbjct: 1018 LMVKGVVETD--GNVVHVIAQELTDCSSLMAEL 1048 >UniRef50_C8WRV2 DNA polymerase III, alpha subunit n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRV2_ALIAD Length = 992 Score = 962 bits (2486), Expect = 0.0, Method: Composition-based stats. Identities = 328/926 (35%), Positives = 519/926 (56%), Gaps = 43/926 (4%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 FVHL VHS +S + L + +V+ A A MPA+AITD + G + FY GI P Sbjct: 2 DFVHLHVHSAFSFRESLLRVEDIVRAAKACEMPAVAITDTNAMYGALSFYRLARAEGISP 61 Query: 65 IVGADFNVQCDLLGDELTH-------LTVLAANNTGYQNLTLLISKAYQRGYGAAGPIID 117 I+G ++ + VLA GY+ LT L + A + P + Sbjct: 62 ILGMQVSLAVGEEEAAPGRAAEWLDTVVVLAMGMEGYRRLTRLATSAR---WKRPVPHVT 118 Query: 118 RDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRTGRP 176 L E ++GL++L GG + L RG + + + P + F+E+ G Sbjct: 119 LRELAESSDGLVVLCGGPESRLFDFLARGEAEAAERRLLQVAGAVPVGQLFVEVQDHGLR 178 Query: 177 DEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSP 236 E L + ++LA+ +P+VAT+DVR++ D H + R + Sbjct: 179 REREGLPSLIQLAKRYDVPLVATHDVRYLAREDASWHRAYAQLARA-----DAAERFATD 233 Query: 237 QQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMS-TEDYLVKR 295 + + ++ EM + FA++PEAL T EIA+ C + + L + +P++ T D ++ L + Sbjct: 234 EFHFATKAEMADRFANLPEALGRTAEIAEMCALDLPLHQVRMPRYATKDGRPADEVLREA 293 Query: 296 AKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNG 355 A+ G R L P+ EERL+R VI +MG+ YFL+V +FI+ + G Sbjct: 294 ARAGAARRYGALSPEVEERLEREL----------DVICRMGYADYFLVVADFIRHAHQQG 343 Query: 356 VPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVI 415 + GPGRGS AGSLVAYAL+ITD+DP+ LLFERFLNP RVS+PD D DF E+R +VI Sbjct: 344 ISTGPGRGSAAGSLVAYALRITDVDPIRHKLLFERFLNPARVSLPDIDTDFEFERRGEVI 403 Query: 416 EHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAF 475 +V + YGRD V+QI TFGT+ A+A +RD GR+ G VDR++KL+P +L A+ Sbjct: 404 RYVIEKYGRDRVAQIGTFGTLQARAALRDAGRMTGADPALVDRLAKLVPGVVHASLDGAY 463 Query: 476 EAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGK 535 + E+ + + + L + A+++E + + HA GV+I+P I D+ PL + Sbjct: 464 QESAAFRELVDGSPDARRLFEAAKRIEDLPHHTSIHAAGVIISPEPIADWIPLDLAAD-D 522 Query: 536 HPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKK 595 PVT + DVE G VK DFLGL+TLT+I+ L+ I KR +D + DK Sbjct: 523 TPVTAYPMEDVEALGFVKMDFLGLKTLTLIDRCLDSIRKRTGVT----IDWRQVDEGDKA 578 Query: 596 SFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRK 655 ++ +L R++T VFQLES GM+ +++ L+P +D+IA+++L RPGP++ + F D K Sbjct: 579 TYALLTRADTNGVFQLESAGMRRVLRELRPTSLDDVIAVISLNRPGPME--NIPAFCDAK 636 Query: 656 HGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKK 715 HGR ++YP H L+P+L TYG+I+YQEQ+MQIA ++G++L AD+LRRA+ KK Sbjct: 637 HGRRPVTYP-----HPDLEPILADTYGVIVYQEQIMQIASRMAGFSLAEADLLRRAVSKK 691 Query: 716 KPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 775 K E + ++R+ F +G + G + E A +++DL+ +FA YGFN+SH+AAYA+++++T +L+ Sbjct: 692 KREILDEERARFVDGCVRRGYSEETAREVYDLIVRFADYGFNRSHAAAYAVLAFRTAYLR 751 Query: 776 AHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGI 835 AH+ +F+AA++T M +K+ + R G+++ PP + + V +DG + G+ Sbjct: 752 AHFLPDFLAALLTLSMGAPDKIRLYEQDARRHGIQVRPPSVLRSERGYTVEEDGSLRAGL 811 Query: 836 GAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRL---G 892 +I+ VGE ++ I+ R++ F L D R + + +NR+ L+ L +GA D Sbjct: 812 ISIRNVGEAAVDHILSLRSE-KPFASLVDFLRRIEPRIVNRKALDSLFAAGALDEFFPEN 870 Query: 893 PHRAALMNSLGDALKAADQHAKAEAI 918 R +AL A++ + A+ Sbjct: 871 ASRDVRRQMYEEALLRAEESRQWAAL 896 Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 46/135 (34%), Gaps = 14/135 (10%) Query: 1030 LFTDALDK-YQQLLEKDRILIVSGQVSFDDFSGGLKMTAR-EVMDIDEAREK----YARG 1083 F + + ++ + ++ +L + L + E EA A+ Sbjct: 866 FFPENASRDVRRQMYEEALL----RAEESRQWAALDLFVEAEAKSASEASGGASATSAKR 921 Query: 1084 LAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLL 1143 L I R Q+L +++ L G V LY G+ +RV + L+ Sbjct: 922 LYIRYRSRGG-AQVLREIQRLL-AMSPGETEVALYDASTGRARL--LGSRYRVEVTQDLV 977 Query: 1144 NDLRGLIGSEQVELE 1158 L +G V L+ Sbjct: 978 AALEERVGLGNVRLK 992 >UniRef50_D2DXW4 DNA polymerase III alpha subunit (Fragment) n=1 Tax=uncultured Verrucomicrobia bacterium RepID=D2DXW4_9BACT Length = 1040 Score = 961 bits (2485), Expect = 0.0, Method: Composition-based stats. Identities = 298/1078 (27%), Positives = 512/1078 (47%), Gaps = 66/1078 (6%) Query: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61 + +V L S S + G + LV++AA L +PALA+ D + G + + G G Sbjct: 9 ATMTYVELHARSACSFLRGASHPESLVREAARLKLPALAVCDRDGVYGSARVHRDGKEHG 68 Query: 62 IKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL 121 ++ IVGA+ ++ + VL A TGY+NL +I++A RG P + D L Sbjct: 69 VRAIVGAELTMEDQSVVP------VLVATRTGYRNLCQMITRAKLRGTKLDAP-VRWDEL 121 Query: 122 IELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPD-RYFLELIRTGRPDEES 180 E +EGL+ L+G G V R+L + A F F+E+ R EE Sbjct: 122 GEFSEGLVALTGDEEGPVRRALASKDRAAAMAATERLRAAFGGHNVFVEIQRHLHRGEER 181 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 A +LAEA GLP++ATN V + ++ L+ R Y+ ++++ Sbjct: 182 ENDALADLAEATGLPLLATNGVLHATREERGVLDVFSCARHHTNLESGGRHLAYNAERHL 241 Query: 241 RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEG 299 +S M LFA+ PEA+ANT +A R ++ Y P+FP + + L R EG Sbjct: 242 KSPARMARLFANHPEAIANTERLADRLEFSLENLGYEFPKFPVSPGETMDSVLYHRTMEG 301 Query: 300 LEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVG 359 R + P ++L EL++I ++GF GYFLIV + + + +++ + + Sbjct: 302 ARNRYPAMTPK----------VLDQLHKELELITRLGFSGYFLIVWDLVNFCRNDNILI- 350 Query: 360 PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF-CMEKRDQVIEHV 418 GRGS A S V YAL IT DP+ +LLFERFL+ R + PD D+D ++R++VI+ V Sbjct: 351 QGRGSAANSAVCYALGITACDPVAGNLLFERFLSEGRKTWPDIDLDLPSGDRRERVIQEV 410 Query: 419 ADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAE 478 YGR + T ++ +R++G+ L ++R S+L + Sbjct: 411 YRRYGRHGAAMTANVITFRGRSAMREIGKALNFAPDVLNRFSRLFGNG---DFPHTMDLS 467 Query: 479 PQLPE--IYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKH 536 QL E I K+ +++ RK+ G+ R+ G+H+GG++I +++ PL Sbjct: 468 AQLREAGIPPEHPRTKSAVELYRKIYGLPRHLGQHSGGMIICQGELSSVVPLENASMPGR 527 Query: 537 PVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKS 596 V Q+DK D G++K D LGL + + +LEM R + P+D+A +P+DD + Sbjct: 528 VVAQWDKDDCHDLGIIKVDLLGLGMMAAMQDSLEMCQAR-----DRPVDLATMPMDDPAT 582 Query: 597 FDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKH 656 +D++ R++T FQ+ESR + RL+P F D++ VA+ RPGP+Q G++ ++ R Sbjct: 583 YDLMCRADTIGTFQVESRAQMATLPRLRPQKFYDVVVEVAIIRPGPIQGGLLHPYLARHA 642 Query: 657 GREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMG-KK 715 G+E++ Y H LKPVLE T G+ L+QEQ++++A V++ ++ A+ LRRA+ + Sbjct: 643 GKEDVEY-----IHPDLKPVLERTLGVPLFQEQILKVAMVMADFSGSEAEDLRRALSFHR 697 Query: 716 KPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 775 E M + G + G++ E+ +I + FA YGF +SH+ ++AL++Y + W+K Sbjct: 698 SQERMDQVCVKLRAGMVRKGVDPEIVDRIVHATQSFAVYGFPESHAISFALIAYASCWMK 757 Query: 776 AHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGI 835 H EF A ++ LV + R GL+ + + V DD + G+ Sbjct: 758 VHRAPEFYAGLLNNQPMGFYSPATLVKDAKRRGLRTRAVSVLVSDWLCTVGDDDTLRLGL 817 Query: 836 GAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHR 895 ++G+ + E I+ R + F L D RT + + L L GA + L HR Sbjct: 818 CYVRGLTKEDGERIVAERQR-KSFESLMDFQLRT---AVPKPALRTLAKIGALNGLSEHR 873 Query: 896 AALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERE 955 A + + D A+ +I + +P + + Sbjct: 874 RAAQWEVEIRREEDDLFAR------------------EIREEELPLKPMDPFERVRADYA 915 Query: 956 TLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIG 1015 L HP+ R R D+ G+ ++ G+V+ + T +G + Sbjct: 916 GTSLTTGPHPMALVRD---RLPDLWRAADLPLAVNGQRLSIGGMVICRQRPGTAKG--VV 970 Query: 1016 ICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDI 1073 +L+D SG ++ + ++ + + +++ L + G++ G + + AR ++ + Sbjct: 971 FVSLEDESGVANAIVSSALFEQRRMCITEEQFLQIEGELQH--VEGVIHVKARTILPL 1026 >UniRef50_D2DXS3 DNA polymerase III alpha subunit n=2 Tax=Verrucomicrobia RepID=D2DXS3_9BACT Length = 1022 Score = 957 bits (2473), Expect = 0.0, Method: Composition-based stats. Identities = 293/1073 (27%), Positives = 503/1073 (46%), Gaps = 74/1073 (6%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 +V L S +S + G + L ++AA L MPA+A+ D + G +F+G G G++ I Sbjct: 3 YVELHARSAFSFLRGGSFPERLAERAAELKMPAMALCDRDGVYGAPRFFGKGREHGVRSI 62 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 VG + + ++ L VL + TGYQNL L+++A RG P ++ + L E Sbjct: 63 VGCELTM------EDGFILPVLVESRTGYQNLCRLLTQAKLRGTKERSP-VNWNDLAEYA 115 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 185 GL+ L G G + + F+E+ R E+ A Sbjct: 116 NGLVALFGMENGKL----------EAGPVPKLLAAFGKENVFVEIQRHLTRGEQRRNQAL 165 Query: 186 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 245 ++LA LP++ATN V + + + ++ + LD R + +++++S E Sbjct: 166 IDLARHHRLPLLATNGVLYAEPRQREVLDVFTCLRHHTQLDLAGRLLEQNAERHLKSGAE 225 Query: 246 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGLEERL 304 M LF D+PEA+ NT +A+R T+ Y P FPT GD + E L + EG R Sbjct: 226 MSALFRDLPEAIDNTERLAERLEFTLENLGYQFPTFPTSGDETMEGMLRRLTYEGARRRY 285 Query: 305 AFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGS 364 + P + ++E EL++I ++GF GYFLIV + +++ ++N + V GRGS Sbjct: 286 SARLPRK---------VVRQIERELELICRLGFAGYFLIVWDLVKFCEENDIMV-QGRGS 335 Query: 365 GAGSLVAYALKITDLDPLEFDLLFERFLNPERV--SMPDFDVDF-CMEKRDQVIEHVADM 421 A S+V Y L+IT DP+++ LLFERFL+ R S PD D+D ++R++VI+ V Sbjct: 336 AANSVVCYCLRITLCDPIKYKLLFERFLSEGRNPRSWPDIDLDLPSGDRRERVIQEVYRR 395 Query: 422 YGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP-DPGMTLAKAFEAEPQ 480 YG + + ++ R++G+VL +DR S L D TL F+ + Sbjct: 396 YGERGAAMTANVISYRGRSAAREIGKVLNFSNDVLDRFSNLFANGDFPHTL--GFQEQVI 453 Query: 481 LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQ 540 I + A + + + G+ R+ G+H+GG+VI + PL V Q Sbjct: 454 KAGIAPEHPRLPAFMRLNEAMRGLPRHLGQHSGGMVICQQSLDRVVPLERASMPGRVVVQ 513 Query: 541 FDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDML 600 +DK D E G+VK D LGL L I L + ++R + +P DD +++M+ Sbjct: 514 WDKDDCEDLGIVKIDLLGLGMLAAIQETLTLCSERG-----REVQFHKLPQDDPATYEMI 568 Query: 601 QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE 660 ++++T VFQ+ESR + R++P CF D++ VA+ RPGP+Q G++ ++ R+ G+E Sbjct: 569 RKADTIGVFQIESRAQMATLPRMKPTCFYDLVIEVAIIRPGPIQGGLMHPYLARREGKEP 628 Query: 661 ISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMG-KKKPEE 719 +Y E LKPVLE T G+ L+QEQ++ +A L+ ++ A+ LRRA+ + E Sbjct: 629 ETYFGYD---ELLKPVLERTLGVPLFQEQMLGMAMALADFSGSEAEELRRALSFHRSHER 685 Query: 720 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 779 M K + E+ I E +I + V FA YGF +SH+ ++A ++Y + WLK H Sbjct: 686 MEKVQVKLRAALERKEIRPEAIEQIVNAVSSFALYGFPESHAISFAYLAYGSSWLKVHRA 745 Query: 780 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 839 EF AA++ L+ + R G+K P + + + + DG I G+ +K Sbjct: 746 PEFYAALLNNQPMGFYAPATLIKDAQRRGVKFRPVCVQASQWPCVIEADGAIRLGLCMVK 805 Query: 840 GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 899 G+ E +I R + L D+ +R +L + L GAF LG HR + Sbjct: 806 GLQRERAERLIAGR----PYEVLGDVQSRV---RLTKEEWRTLAEIGAFAVLGKHRREAL 858 Query: 900 NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 959 ++ D + + D+F + ++ P + + + Sbjct: 859 WTVEDEYR------------EDDLFPMTTASVKECP-----LPPMNPAERVRADYAGTSV 901 Query: 960 YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTL 1019 + HP+ + R D+ G + AG V+ + T +G + +L Sbjct: 902 TIGRHPMALLRASVPE---AWRAVDLAHASHGTRVRIAGNVICRQRPGTAKG--VVFISL 956 Query: 1020 DDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072 +D +G ++ ++ + L+ ++ L++ G + + ++ A ++ Sbjct: 957 EDETGIANAIVHPWVFERDRLLITQEAFLVIEGVLQARAGTQIVQ--AEKIEP 1007 >UniRef50_Q6A780 Error-prone DNA polymerase n=9 Tax=Actinobacteria (class) RepID=DNAE2_PROAC Length = 1134 Score = 955 bits (2469), Expect = 0.0, Method: Composition-based stats. Identities = 317/1136 (27%), Positives = 507/1136 (44%), Gaps = 112/1136 (9%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 + L HS YS +DG + LV +A LG+ LA+TD L G+V+ A G+ Sbjct: 56 PYAELHCHSSYSFLDGASNPEDLVIRAVELGLSGLALTDHDGLYGVVRMAEAAEACGLST 115 Query: 65 IVGADFNVQCDLLGDE-----LTHLTVLAANNTGYQNLTLLISKAYQ-RGYGAAGPIIDR 118 I+G++ ++ + +HL VLA GY+ L ++ AY G P+ D Sbjct: 116 IIGSELSIGVPEPQNGVADPVGSHLLVLANGPEGYRRLAEALTDAYLVEGGRKGRPVHDL 175 Query: 119 DWLIELNEG-LILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRTGRP 176 D L E+ +G +L+G R G V + L++G + + + F D +EL P Sbjct: 176 DHLAEVADGHWTVLTGCRKGAVRQGLVKGMLQ-AEAELRRLVDLFGIDNVLVELTDHRAP 234 Query: 177 DEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSP 236 + ELA L VAT + + F+ A+ +LD+ P Sbjct: 235 TDSRDNDLLAELASRHSLLTVATTAAHYAGAEQFELACALSAVRARRSLDEMDGWLPPGP 294 Query: 237 QQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTE-DYLVKR 295 +RS EM +LF+ +A+ NTV +A+R ++ LP D T +L Sbjct: 295 VARLRSGAEMADLFSRHRDAVDNTVAVAERTAFHLKSVRPRLPDQKVPDGHTPISWLRHL 354 Query: 296 AKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNG 355 +EG P +RL TEL +I GF GYFLIV + +++++ G Sbjct: 355 VEEGRRACYGD-----------DPVAKDRLATELDLIEDRGFAGYFLIVSDIVEFAQSQG 403 Query: 356 VPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVI 415 + GRGS A S V Y L IT +DP+ + L FERFL+ R PD DVDF +R++VI Sbjct: 404 IL-CQGRGSAAASAVCYVLGITVVDPVFYGLPFERFLSVLREEEPDIDVDFDARRREEVI 462 Query: 416 EHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAF 475 ++V YGR +Q+ T ++ +RD+ + LG+ G D S+ + Sbjct: 463 QYVYAKYGRRNAAQVADVITYRPRSAVRDMAKALGYSQGQQDAWSRQMERR--------- 513 Query: 476 EAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGK 535 + P LP + E + +A+++ G+ R+ G H+ G+V+ + P+ Sbjct: 514 -SVPPLPHDPDGPEIPDDVTTLAQQVMGLPRHLGIHSAGMVLTREPVGRICPIEPARMFG 572 Query: 536 HPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKK 595 V Q+DK D + GLVKFD LGL L+ ++ + ++I++ + +A+IP ++ Sbjct: 573 RTVLQWDKEDCAWMGLVKFDLLGLGMLSALSISFDLISQHCGRF----WTLASIPRNEPG 628 Query: 596 SFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRK 655 +DML R ++ VFQ+ESR + RL+P CF D+ + L RPGP+Q G V +I R+ Sbjct: 629 VYDMLCRGDSIGVFQVESRAQIGALPRLKPRCFYDLAVEIGLIRPGPVQGGAVHPYIRRR 688 Query: 656 HGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKK 715 G E ++YP H L+PVLE T GI L+QEQ+MQ+A + T AD+LRRAMG K Sbjct: 689 TGVEPVTYP-----HPLLEPVLERTLGIPLFQEQLMQMATTVGNCTAADADLLRRAMGSK 743 Query: 716 KP-EEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWL 774 + E + R+ EG NGI+ + A I+ +E FA +GF +SH+ ++A + Y + W+ Sbjct: 744 RGVERIDSLRTKLFEGMAANGIDDDTAQGIYARIESFANFGFAESHALSFAGLVYTSAWI 803 Query: 775 KAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN-------- 826 K HYPA F+AA++ + LV + R G+ PD+ + Sbjct: 804 KLHYPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRPDVARSSVGADLELLDACCEE 863 Query: 827 -----------------------------DDG--------EIVYGIGAIKGVGEGPIEAI 849 DDG + G+ + G+ I Sbjct: 864 LGSEELETGIDECLHDHDESEIGAFDPNRDDGDHRRDTHFAVRLGLSDVSGINIETATRI 923 Query: 850 IEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAA 909 +E R + F L DL R D +E L ++GAFD L R + +G A Sbjct: 924 VEERERE-SFASLDDLARRVDLSG---EEVEALALAGAFDDLVGSRRGALWQIGQINGVA 979 Query: 910 DQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQY 969 + + Q + + +L + G+ HP+ Q Sbjct: 980 PGQLDVQVVTQPPL-----------------LPEPTQMELLGDDLRATGISTADHPVRQV 1022 Query: 970 LKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVM 1029 + R G V++ + E + I AG+V + T G + L+D +G L V+ Sbjct: 1023 RDALNR-RGVVQVDRLDGVETRRRIEVAGVVTHRQRPGTAGG--VTFLNLEDETGLLNVI 1079 Query: 1030 LFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLA 1085 + A Y+++ R L+V G + D G + + A + +D + +R Sbjct: 1080 VTPGAWRHYRRVARTSRALVVRGILERGD-EGVMSLQADRLEALDLSVPTKSRDFR 1134 >UniRef50_C1AAH7 Error-prone DNA polymerase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AAH7_GEMAT Length = 1113 Score = 951 bits (2458), Expect = 0.0, Method: Composition-based stats. Identities = 287/1117 (25%), Positives = 492/1117 (44%), Gaps = 92/1117 (8%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 ++ L HS +S++DG + LV +AA+ G ALA+TD + G+V+F A + Sbjct: 28 QYAELHCHSAFSLLDGASLPEQLVTRAASFGYQALALTDHDEMGGIVQFGVAARERQLNA 87 Query: 65 IVGADFNVQCDL----LGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 I+G + V+ GD T L +LA GY+N++ L+++A P + Sbjct: 88 ILGVELTVRMPHLDGQRGDRRTQLVLLAETREGYRNISTLVTRARMDSERGR-PSVPLAM 146 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 180 L + G+ L+GG G V + L G E F +E P+E Sbjct: 147 LRQHAAGVTALTGGPRGWVPQLLAEGRQYEAFEAAQELHAIFGQHLAIECWDHRLPEERV 206 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 + + LA+ G+P V TN+V + + D H+ A+ TLD+ + + + Sbjct: 207 LVEQLIPLAKWLGVPWVVTNNVYYAEPKDRAVHDALSALRHQRTLDEMGTRLRPNAEWAL 266 Query: 241 RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKRAKEG 299 + + + + + E + T++IAKRC + + +P FP D + + YL + G Sbjct: 267 KDPRLIYQRWRGLEEGVRATLDIAKRCAFRLAGLKPAMPPFPLPDGFTADTYLEEIVLTG 326 Query: 300 LEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVG 359 ER F D + +++ EL I + +FL V ++ ++ G+ Sbjct: 327 ARERWGDRFSD---------VHRQQIAHELAAIRRRDCATFFLTVWRIVRHARSEGIL-C 376 Query: 360 PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVA 419 GRGS A S V Y L +T +DP+ F LLFERFL + PD D+DF R+++++HV Sbjct: 377 QGRGSAASSAVCYCLGVTPVDPIYFGLLFERFLGDDATEEPDIDIDFAHRDRERILQHVY 436 Query: 420 DMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEP 479 +GR+ + + T ++ RD RVLG D ++ T A FE Sbjct: 437 KHFGREHAAMVCEQITWGGRSAARDAARVLGFSPQQGDILADFSDRHGAHTTADLFETAE 496 Query: 480 QLPEI-----YEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEG 534 + D V+ L + L + R+ H GG V++ + P+ Sbjct: 497 GQQRLTAAGFDLTDPRVQQLAPVMNGLHELPRHRSIHVGGFVLSDEPLGSLVPIEPASMA 556 Query: 535 KHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDK 594 V Q++K D+ G+ K D LGL LT++ L + + +D+A +DDK Sbjct: 557 DRTVIQWEKDDLGPVGMYKIDLLGLGMLTVVQDCLRYLRHTK----NTHIDMAHFNMDDK 612 Query: 595 KSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDR 654 +D + R++T VFQ+ESR + RL+P CF D++ VAL RPGPLQ MV ++ R Sbjct: 613 DVYDTMCRADTVGVFQIESRAQMSTLPRLKPRCFYDLVVEVALIRPGPLQGQMVHPYLRR 672 Query: 655 KHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK 714 + E + YP H +KP+LE T+G+ ++QEQ MQ+A ++ +T AD LR+ MG Sbjct: 673 RAKEEAVDYP-----HPDVKPILERTFGVPIFQEQAMQVAIKMADFTQAQADELRKTMGH 727 Query: 715 KKPEE-MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLW 773 K+ + M K +G EK I+ ++ +I + FA +GF +SH+A++AL+ Y T + Sbjct: 728 KRSKVRMKKVERQLRDGMEKKKIDPKVIERICHQINGFAAFGFPESHAASFALIVYATAY 787 Query: 774 LKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN------- 826 L+ HY E++ A++ A L+++ R G+++ P D+ + + Sbjct: 788 LRYHYAPEYLCAILNAQPMGFYAPGTLIEDAKRHGVEVRPVDLMRSGWDHSLELPDGRTL 847 Query: 827 --DDGEI--------------------VYGIGAIKGVGEGPIEAIIEARNKGGYFRELFD 864 +DG I G+ I+ +G ++EA G FR + D Sbjct: 848 MPNDGTILWGPRHTIDATQTSAEHVAVRLGVRLIRNLGSK-ARKVLEAALADGPFRSIED 906 Query: 865 LCARTDTKKLNRRVLEKLIMSGAFDRLGPH------RAALMNSLGDALKAADQHAKAEAI 918 +R L+ R L +GA D + H R + + Sbjct: 907 AVSRV---TLDARGWRALAEAGALDSMFAHEPPERRRRVALWEVLAL------------- 950 Query: 919 GQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVG 978 L P + S + + G+ L GHP+ +E G Sbjct: 951 ---TKEPPLPLAPPRRAPPPTSLAACTPVELTAADYRMTGVSLVGHPMKHARPVLEP-NG 1006 Query: 979 GVRLKDMHPT-ERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDK 1037 ++D+ + G+ + AG+V+ + T +G TL+D +G L +++ Sbjct: 1007 VRTIQDIQQHGKDGETVAIAGVVICRQRPPTAKG--FVFLTLEDETGMLNIIITPKRFAP 1064 Query: 1038 YQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDID 1074 +L+ ++ +L++ G + SG + + A + + Sbjct: 1065 NAELIARESVLLIRGILQVQ--SGAVNIRADKFRALQ 1099 >UniRef50_B1XYC3 DNA polymerase III, alpha subunit n=4 Tax=Burkholderiales RepID=B1XYC3_LEPCP Length = 1109 Score = 949 bits (2454), Expect = 0.0, Method: Composition-based stats. Identities = 287/1131 (25%), Positives = 492/1131 (43%), Gaps = 101/1131 (8%) Query: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG-- 61 P + L S++S + G + L+ +AA LG ALAITD ++ G+V+ + A Sbjct: 6 PDYAELHCRSNFSFLSGASHAEELISRAARLGYRALAITDECSVAGVVRAHEAARHPRGE 65 Query: 62 --------IKPIVGADFNVQCD-----LLGDELTHLTVLAANNTGYQNLTLLISKAYQRG 108 ++ I+G++F + L +L N GY L LI+ A R Sbjct: 66 RAPDDPGLLRLIIGSEFTLSPAAASGTRPPHPGGRLLLLVRNRAGYGQLCTLITLARSRC 125 Query: 109 YGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFL 168 + D+ ++ LL R D+ L + + F +R + Sbjct: 126 AKGDYRLDADDFDPAPSDCWALLLPRREDDLPTLLTQ---------ARWLVARFGERARI 176 Query: 169 ELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228 + D+ + A ++A G P+VA DV S + AI L D Sbjct: 177 AIELLQHADDNLRIAHARAASQASGAPLVAAGDVLMHVRSRKPLADTLTAIRHHLPLADC 236 Query: 229 KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMST 288 + +Q++RS + +++ PE LA +V IA C ++ Y P + Sbjct: 237 GHLLMRNAEQHLRSRLALAQIYR--PEWLAESVRIADACTFSLDELRYEYPDEIVPAGHS 294 Query: 289 ED-YLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347 YL + G R P P ++E EL ++ +M + +FL V + Sbjct: 295 ASSYLRQETLAGAARRY----PPHSHPDGIPPGVLAQIEHELALVAEMRYEAFFLTVHDI 350 Query: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 ++ ++ G+ GRGS A S V Y L IT++DP + LLFERF++ ER PD DVDF Sbjct: 351 VRQARRLGIL-CQGRGSAANSAVCYCLGITEVDPTQTTLLFERFISRERGEPPDIDVDFE 409 Query: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467 E+R+++I+++ YGR + T + +RDVGR G +D ++K Sbjct: 410 HERREEIIQYIYAKYGRHRTALAAAVSTYRVRGALRDVGRAFGLDELLIDAVAKSYQWFD 469 Query: 468 GMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAP 527 G A + + +++A L G R+ +H+GG VIA ++ P Sbjct: 470 GRG---ALSERLAEQGLDAESPVTQQWLELATTLMGFPRHLSQHSGGFVIARESLSQLVP 526 Query: 528 LYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGE------ 581 + + Q+DK D+E GL+K D L L LT++ +L++ N + + Sbjct: 527 IEPAAMDGRQIIQWDKDDLESLGLLKVDVLALGMLTVLRKSLDLANAWHGRTAQAWRGGS 586 Query: 582 -------------PPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCF 628 P + IP DD ++ M+++++T +FQ+ESR + ++ RL+PD F Sbjct: 587 GSFSHRAPQRPEREPWTLHHIPRDDPATYAMIRKADTVGMFQIESRAQQSMLPRLRPDKF 646 Query: 629 EDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQE 688 D++ VA+ RPGP+Q GMV ++ RK G+E P + +L L T G+ ++QE Sbjct: 647 YDLVIEVAIVRPGPIQGGMVHPYLRRKQGKERADSP-----YPALDAALARTLGVPIFQE 701 Query: 689 QVMQIAQVLSGYTLGGADMLRRAMGK-KKPEEMAKQRSVFAEGAEKNGINAELAMKIFDL 747 QVMQ+ + +G++ G AD LRRAM ++ + G + G A IF Sbjct: 702 QVMQVCMIAAGFSPGEADGLRRAMAAWRRKGGVHHFHERIVGGMVERGYERAFAEGIFRQ 761 Query: 748 VEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRM 807 ++ F YGF +SH+ ++A++++ + WLK H PA F+AA++ + LV + R Sbjct: 762 IQGFGEYGFPESHAYSFAILAWFSAWLKCHEPAAFLAALLNSQPMGFYGPAQLVADARRH 821 Query: 808 GLKILPPDINSGLYHFHVN------------------------DDGEIVYGIGAIKGVGE 843 +++ P D+ + + + G+ + G+ + Sbjct: 822 QVEVRPVDVTRSDWDCTLEAPSPAAAAPATDPPASARPPGSGAGGPAVRLGLRQVGGLSQ 881 Query: 844 GPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLG 903 E +++AR + F ++ DL R L+ L+ L + A L HR + + Sbjct: 882 ASAERLLQARREA-AFIDVHDLARRA---ALDPHELQTLARADALAALAGHRRQQVWA-- 935 Query: 904 DALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTG 963 AA A G G+L + P + Q S PE + + GL L Sbjct: 936 ----AAAPPAAPLTTGTGPGAGLLQDAPIREPQ--LSLIEAPEGEAVTLDYAATGLSLRR 989 Query: 964 HPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRS 1023 HP+ + + R ++ G+V+ A GLVV+ + T G TL+D + Sbjct: 990 HPLALLRERLRRQA-VKSAAELARVPDGRVVRACGLVVSRQQPGTAHGT--VFVTLEDET 1046 Query: 1024 GRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDID 1074 G + ++++ D ++Y++ L + R+L V G D G + A ++ DI Sbjct: 1047 GVVNLIVWQDVRERYRRALLESRLLAVRGTWQQRD--GVAHLLAHDLFDIS 1095 >UniRef50_D1VJQ4 DNA polymerase III, alpha subunit n=1 Tax=Frankia sp. EuI1c RepID=D1VJQ4_9ACTO Length = 1213 Score = 946 bits (2447), Expect = 0.0, Method: Composition-based stats. Identities = 316/1183 (26%), Positives = 494/1183 (41%), Gaps = 141/1183 (11%) Query: 8 HLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVG 67 L HS +S +DG ++ LV++AA LG+ ALA+TD + G+V+F A G++ + G Sbjct: 67 ELHCHSAFSFLDGASQPEDLVEEAARLGLSALALTDHDGMYGVVRFAEAAEQVGLRTLYG 126 Query: 68 ADFNVQCDLLGDELT--------------------------------HLTVLAANNTGYQ 95 + ++ HL VLA GY+ Sbjct: 127 VEVSLAPGPDRPVPGPDTGEPRPGPRRPGPPGEAPAPRPGVPDPVGDHLLVLARTPEGYR 186 Query: 96 NLTLLISKAYQRGYGAAGPIIDRDWLIELNEG--LILLSGGRMGDVGRSLLRGNSALVDE 153 L+ +S A+ G P+ D L +L+G R G V +L G Sbjct: 187 RLSRAVSDAHLAGGEKGRPLTSLDVLAAAAGDGHWQILTGCRKGLVPAALAAGGLDAARV 246 Query: 154 CVAFYEEHFP-DRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDA 212 + F D +EL P + A LA+ GL VATN+V + S Sbjct: 247 ALDGLVGRFGRDNVAVELWDHAHPLDSDRNDALYGLAQEAGLTCVATNNVHYATPSAGRL 306 Query: 213 HEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVR 272 + +I +LD+ + ++RS EM + FA P A+ + +R Sbjct: 307 AAVMASIRARRSLDEMDGHLPPAGAAHLRSGAEMTDRFARYPGAVEAAARVGTESAFNLR 366 Query: 273 LGEYFLPQFPTGDMSTE-DYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQV 331 L LP FP TE +L +G R + ++L EL + Sbjct: 367 LVAPRLPDFPVPPGHTEASWLRLLTMQGAARRYGPPVRERVGGAY------DQLAHELTL 420 Query: 332 INQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERF 391 I +GFPGYFLIV + +++ + + GRGS A S V YAL IT +D + F LLFERF Sbjct: 421 IESLGFPGYFLIVHDIVEFCRREDIL-CQGRGSAANSAVCYALGITGVDAVSFGLLFERF 479 Query: 392 LNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGH 451 L PER PD D+D +R++VI++V YGRD +Q+ + +++ +RDV R LG Sbjct: 480 LAPERDGPPDIDLDIESGRREEVIQYVYGRYGRDRAAQVANVISYRSRSAVRDVARALGF 539 Query: 452 PYGFVDRISKLIPPD-----------PGMTLAKAFEAEPQLPEIYEADEEVK-----ALI 495 G D S I P A P + E + + ++ Sbjct: 540 SPGQQDAWSSGIDRWSPLPAAAPPAPPAAVPAVPAAVTPGPGQAVEPADRIGTAIPVEVV 599 Query: 496 DMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFD 555 +A +L G R+ G H+GG+VI + + P+ V Q+DK D AGLVKFD Sbjct: 600 GLAGQLLGFPRHLGIHSGGMVICDRPVAEVVPVEWARMPGRTVIQWDKDDCAVAGLVKFD 659 Query: 556 FLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRG 615 LGL L ++ A +I + LD+ IP +D +DML +++ VFQ+ESR Sbjct: 660 LLGLGMLGALHLAFALIRDHHGR----HLDLGEIPPEDPAVYDMLCAADSIGVFQVESRA 715 Query: 616 MKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKP 675 + RL+P F D++ VAL RPGP+Q G V +I R++ EE++YP H L+ Sbjct: 716 QMATLPRLRPRRFYDLVVEVALIRPGPIQGGSVHPYIRRRNDLEEVTYP-----HPLLER 770 Query: 676 VLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKP-EEMAKQRSVFAEGAEKN 734 L+ T GI L+QEQ+MQ+A ++G+T AD LRRAMG K+ E + + R F +G N Sbjct: 771 SLKKTLGIPLFQEQLMQMAIDVAGFTAAEADQLRRAMGAKRATERIDRLRERFYQGMATN 830 Query: 735 GINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNT 794 GI A +++ + FA +GF +SHS ++A + Y + W+K +YPA F AA++ A Sbjct: 831 GITGAAADELYTKLAAFANFGFPESHSVSFAFLVYASAWIKLYYPAAFCAALLNAQPMGF 890 Query: 795 EKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDG------------------------- 829 LV + R G+ + PD+N+ + +G Sbjct: 891 YSPQSLVADARRHGVTVHGPDLNASGAGAILTGEGRPAGLAEPVWDGEPAGEPVGDVPAP 950 Query: 830 ---------------------------EIVYGIGAIKGVGEGPIEAIIEARNKGGYFREL 862 + G+ ++ +G E I+ AR+ GG +R++ Sbjct: 951 ARIGVGAAAGQAPPNGEADGLTGPRHPAVRLGLAGVRLIGTANAERIVAARDVGGPYRDM 1010 Query: 863 FDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQAD 922 DL RT LE L +GAF G R A AA Q G Sbjct: 1011 ADLARRTGLAA---AQLEALATAGAFGCFGLARRE----ALWAAGAAAQARPDRLEG--- 1060 Query: 923 MFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRL 982 A + + G+ + +P ++ +G V Sbjct: 1061 -----TALVGDPAAVAAHLPGMSGAEEIVADLWATGITPSRYPTEFVRDRLDA-LGVVVA 1114 Query: 983 KDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLL 1042 + + + AG+V + T G L+D +G + V+ +++ + Sbjct: 1115 TRLARLPGDRRVVVAGVVTHRQRPATAGGTT--FLNLEDETGLVNVICSRGVWVRHRVVA 1172 Query: 1043 EKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLA 1085 LIV G++ G + + A + + A + +R Sbjct: 1173 TSAPALIVRGRLE--KADGVVNVIAERLERLPLAVARRSRDFR 1213 >UniRef50_C7R3Y6 DNA polymerase III, alpha subunit n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R3Y6_JONDD Length = 1093 Score = 944 bits (2440), Expect = 0.0, Method: Composition-based stats. Identities = 304/1137 (26%), Positives = 489/1137 (43%), Gaps = 96/1137 (8%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS PR+ L HS YS +DG + A V +A LG+ ALA+T+ L V+ A Sbjct: 1 MSSPRYAELHAHSTYSFLDGASSPAEFVAEAERLGLSALALTEHNGLYSAVQVATAAKDT 60 Query: 61 GIKPIVGADFNVQCDLLGD--------ELTHLTVLAANNTGYQNLTLLISKAYQRGYGAA 112 G++ + GA+ +V + + HL VLA + GY+ L+ +S A+ G Sbjct: 61 GVRTVFGAEVSVTPADAPEPVAGHRDPQADHLVVLARDPRGYRALSHALSLAHLAGGAKG 120 Query: 113 GPIIDRDWLIELNEG-LILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPD-RYFLEL 170 L + + ++L+G R + R+L R E + F ++ Sbjct: 121 RTHHTYTSLADQGDDQWVILAGCRKSPILRALQRQGHDAALEVAHDLAQRFGRQNLVIDW 180 Query: 171 IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230 +R G +++ A +A+ + ++A+ + + D E+ A+ G TL D Sbjct: 181 VRRGTAYDDALGDAVERVAQEAKIALIASTNAHYAHPRDHRRAEVLSALGAGRTLADNDP 240 Query: 231 PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTED 290 R SP ++RS +M L A P ++ +A + LP +P E Sbjct: 241 WRLASPTAHLRSARDMVRLHARRPHSVDAAARLADELAFDFDVVAPRLPPYPVPAGHDES 300 Query: 291 -YLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQ 349 +L + + ++ EL +I +GF GYFLIV + ++ Sbjct: 301 TWLRHLTDNKARRVYGTRDTNHAA--------WQHIDHELSIITSLGFAGYFLIVHDIME 352 Query: 350 WSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCME 409 + + + GRGS A S V YAL IT +D + LLFERFL PER PD D+D Sbjct: 353 FCSTHNIL-AQGRGSAANSAVCYALGITAVDAVRHGLLFERFLAPERDGPPDIDIDIESG 411 Query: 410 KRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPD--- 466 +R++VI+HV YGR +Q+ T T + +RD RVLG+P G V+ SK I Sbjct: 412 RREEVIQHVYTRYGRHHAAQVATVITYRPRLAVRDAARVLGYPIGQVNAWSKTIDRSFRP 471 Query: 467 --------PGMTLAKAFEAEPQLPEIYEADEEV-KALIDMARKLEGVTRNAGKHAGGVVI 517 + Q P ++ ++ A+ D A L + R+ G H+GG+V+ Sbjct: 472 DTPPGTPTTPDHTSDLPAPTTQPPTPHDGRADLPPAVRDTASLLHNLPRHLGIHSGGMVL 531 Query: 518 APTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRA 577 +T P+ V Q+DK D AGLVKFD LGL LT + A + + A Sbjct: 532 CDRPVTHVCPVEWGTTPGRTVLQWDKEDCADAGLVKFDLLGLGMLTALRIAFDHV----A 587 Query: 578 KNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVAL 637 L + +P +D +++LQ ++T VFQ+ESR + RL+P CF D++ VAL Sbjct: 588 ATTNTALGLYTLPPEDPGVYELLQAADTVGVFQVESRAQISTLPRLKPTCFYDIVIEVAL 647 Query: 638 FRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVL 697 RPGP+Q G V ++ R+ GRE ++YP H LKP LE T GI L+QEQ+MQIA Sbjct: 648 IRPGPIQGGSVHPYLRRRQGREPVTYP-----HPLLKPALEKTLGIPLFQEQLMQIAIDA 702 Query: 698 SGYTLGGADMLRRAMGKKKP-EEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGF 756 +G+T +D LRRAMG K+ M R+ +G + GI + +I++ ++ FA +GF Sbjct: 703 AGFTPAESDQLRRAMGSKRSTARMEALRTRLLDGMAQRGIPPHASTEIYERLKAFADFGF 762 Query: 757 NKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDI 816 +SH+ ++A + Y + +LK H+PA F +A++ A L+++ R GL I P I Sbjct: 763 PESHAFSFAHIVYASAYLKRHHPAAFYSALLAAQPMGFYSPQSLMNDARRHGLTIHRPCI 822 Query: 817 NSGLYHFHVNDDG----------------------------EIVYGIGAIKGVGEGPIEA 848 + H + I G+ I + + Sbjct: 823 ATSTITAHPTPNTPQPHPPQHNPHTFHTPASARYVPLPTTHAIQLGLTDIHTITPTIAQR 882 Query: 849 IIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKA 908 II AR F ++ DL R + LE L +GA LG + + A K Sbjct: 883 IITARTTT-AFTDINDLAYRAELTT---TQLEALAAAGALRTLGITPRQGIWAAATASKN 938 Query: 909 ADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQ 968 P + P + + + +P Sbjct: 939 T-----------------PHTLPGLTPHHIPALPPMTAHDTAHADYWSTRITPNTYPTQL 981 Query: 969 YLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEV 1028 + G + ++ E + +T AG+V + T G I +L+D +G + V Sbjct: 982 IRPHLTAQ-GILTAHQVNTHEPNRRVTTAGIVTHRQRPPTAHG--ITFLSLEDETGIINV 1038 Query: 1029 MLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLA 1085 + ++++ + + LIV G+V D G + A + ++ +R Sbjct: 1039 ICPITIWNRHRTTVRTAQALIVRGRVEHAD--GATNLLAEHISPLNLGVASTSRDFR 1093 >UniRef50_Q7WHW8 Error-prone DNA polymerase n=12 Tax=Proteobacteria RepID=DNAE2_BORBR Length = 1052 Score = 944 bits (2440), Expect = 0.0, Method: Composition-based stats. Identities = 289/1101 (26%), Positives = 496/1101 (45%), Gaps = 77/1101 (6%) Query: 1 MSE--PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGH 58 MS P + L S++S + G + LV +A LG ALA+TD +L G+V+ + Sbjct: 1 MSAILPGYAELHCQSNFSFLQGASHPEELVTRAGELGYAALALTDECSLAGVVRAHVEAR 60 Query: 59 GAGIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA------- 111 + I+G+ F +Q LT+LA N GY NL LI+ R Sbjct: 61 EQKLPLIIGSSFTLQ-AGADAPPLDLTLLAQNREGYGNLAELITLGRGRAAKGQYLLTPA 119 Query: 112 --AGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLE 169 P D L + + L +L+ + + E + P R ++ Sbjct: 120 DIEAPAGDNAHLRGMPDCLAILAPPPG---------LAAERLAEQARWLAAQCPGRAWIG 170 Query: 170 LIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPK 229 L ++ + A A A GLP+VA + S H+ AI G ++ Sbjct: 171 LTLLHHCRDDLHRAAVEHAAHASGLPIVALGQAQMHRRSRKPLHDTLAAIRTGRSVGQCG 230 Query: 230 RPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMST- 288 + ++++RS + L+ +ALA T+ IA+RC ++ +Y P T Sbjct: 231 YDLAANAERHLRSRLRLASLYP--AQALAQTLAIARRCTFSLDELQYEYPDEIVPAGHTP 288 Query: 289 EDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFI 348 YL ++ G +R P ++E EL +IN++ + YFL V + + Sbjct: 289 ASYLRQQTYLGARQRFPEGM---------TPAVAAQVEKELALINELRYEAYFLTVYDIV 339 Query: 349 QWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCM 408 +++ G+ GRGS A S V Y L IT +DP + LFERF++ ER PD DVDF Sbjct: 340 GYARSQGIL-CQGRGSAANSAVCYCLGITAVDPARGNTLFERFISKERNEPPDIDVDFEH 398 Query: 409 EKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG 468 ++R++VI+++ + YGR + + ++V+RD GR LG G +D +++ G Sbjct: 399 QRREEVIQYIYEKYGRQRAALTAVVISYRPRSVLRDTGRALGVDNGIIDAVARAHQWWDG 458 Query: 469 MTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPL 528 K + A + ++A L G R+ +H GG VI+ K++ P+ Sbjct: 459 ---KKEMLRSLAACGLDPASRVARQWAELAETLMGFPRHLSQHPGGFVISRGKLSRLVPI 515 Query: 529 YCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAA 588 V Q+DK D++ L+K D L L L+++ AL + +RR + PL + Sbjct: 516 ENAAMPGRSVVQWDKDDLDALRLLKVDVLALGMLSVLRRALALAGQRRGR----PLALHE 571 Query: 589 IPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMV 648 IP DD ++DM+ ++T VFQ+ESR ++ RL+P + D++ VA+ RPGP+Q GMV Sbjct: 572 IPPDDDATYDMICAADTIGVFQIESRAQMSMLPRLRPRQYYDLVVQVAIVRPGPIQGGMV 631 Query: 649 DNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADML 708 ++ R+ GRE+I+YP +++ L T G+ ++QEQVMQIA +G+T G AD L Sbjct: 632 HPYLRRRQGREDITYPG-----PAVRKALARTLGVPIFQEQVMQIAVDAAGFTPGEADAL 686 Query: 709 RRAMGK-KKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALV 767 RR+M ++ + K R+ G A+ A +F +E F YGF +SH+A++AL+ Sbjct: 687 RRSMAAWRRKGGVDKFRAQLVGGLLARNYTADFAQALFRQIEGFGEYGFPESHAASFALL 746 Query: 768 SYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVND 827 +Y + WLK H P F+AA++ + LV + R G+++LP D+ + + D Sbjct: 747 AYASSWLKCHEPEAFLAALLNSQPMGFYAPAQLVQDARRHGVRVLPADVLYSGWEASLQD 806 Query: 828 -----DGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKL 882 + G+ +KG+ E AI +AR + F + D+ R L R+ L+ L Sbjct: 807 APGAARPAVRLGLNLVKGLREDSARAIEQARVRR-PFADTADMARRA---GLPRQALDAL 862 Query: 883 IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942 + A L HR + + L E +E + Sbjct: 863 AAADALRTLAGHRR----------------LASWQAAASAQSRDLLREAVIVETETPALP 906 Query: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVA 1002 E + + ++GL L HP+ ++ ++ ++ A G+V Sbjct: 907 APSEGQTVAADYRSVGLTLGRHPLALLRPQLAA-RNFQTAAVLNTYPNRRLARACGIVTV 965 Query: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGG 1062 + T +G TL+D +G + ++ + +++ ++ L +L + G G Sbjct: 966 RQRPQTAKGT--IFVTLEDETGPINAVVRPELIERQRRELLDATLLGIYGTWQS--VDGV 1021 Query: 1063 LKMTAREVMDIDEAREKYARG 1083 + A+ ++D+ + ++ Sbjct: 1022 RHLVAQRLVDLSSLLGQLSQD 1042 >UniRef50_C5BNE0 Error-prone DNA polymerase n=4 Tax=Bacteria RepID=DNAE2_TERTT Length = 1033 Score = 938 bits (2425), Expect = 0.0, Method: Composition-based stats. Identities = 287/1091 (26%), Positives = 490/1091 (44%), Gaps = 82/1091 (7%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 + HL S+++ + G + A +V++A LG A+A+TD +L G VK + GIK I Sbjct: 3 YAHLFTFSNFTFLRGASHPAEMVEQAYRLGYDAIALTDECSLAGAVKAHVMAEECGIKLI 62 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 VG+ F + + L LA + Y L+ I+ A +R D L Sbjct: 63 VGSYFKLSNNCE------LIALAPDRAAYAELSGFITLARRRADKGEYTAHMDDLRFRLQ 116 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 185 LI+ ++ + F R +L + E+ Sbjct: 117 TCLIIWLPTAN------------TATEDNARIFSAAFKQRLWLGVGHQLAGGEQRLFQQW 164 Query: 186 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 245 LA LP+VA++ + ++ AI+ ++ + + Y+++ +E Sbjct: 165 QNLAATYQLPMVASHLALMHSAERKPLQDVLTAINHNTSVSQLGTRLQSNGENYLKAIDE 224 Query: 246 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKRAKEGLEERL 304 + L+ P + T+ IA+RCN ++ +Y PQ S +L G R Sbjct: 225 VFYLYP--PGLIKQTLLIAERCNFSLNELKYQYPQELVPKGLSPIAHLRALVDSGKARRW 282 Query: 305 AFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGS 364 P + E + L EL +I ++ + YFL V + + +++ + GRGS Sbjct: 283 PGGVPAQAEAI---------LAKELALIEELHYEYYFLTVYDIVAFARQQNIL-CQGRGS 332 Query: 365 GAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGR 424 A S+V Y L IT++ P + ++LFERF++ ER PD DVDF ++R+ VI+++ Y R Sbjct: 333 AANSVVCYCLFITEIAPGQINVLFERFISKERDEPPDIDVDFEHQRREDVIQYIYTKYSR 392 Query: 425 DAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI-PPDPGMTLAKAFEAEPQLPE 483 + T + +++ IRDVG+ LG VD ++K + D L K EA Sbjct: 393 QRAALAATVISYRSRSAIRDVGKALGLDPALVDHLAKSLAWWDRTGDLVKRIEA----AG 448 Query: 484 IYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDK 543 + + V+ + +++ G R+ +H GG VI K++D P+ V Q+DK Sbjct: 449 VQTERQLVQQFFALVQQIIGFPRHLSQHVGGFVITQDKVSDLVPVENASMPGRTVIQWDK 508 Query: 544 SDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRS 603 D+E GL+K D L L LT + L M+N+ +A IP +D ++DML + Sbjct: 509 EDLEAMGLLKVDILALGMLTALRKTLAMVNRYEPAIAS----LADIPPEDPHTYDMLCAA 564 Query: 604 ETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISY 663 +T VFQ+ESR ++ RL+P F D++ +A+ RPGP+Q MV ++ R+ G E +SY Sbjct: 565 DTVGVFQIESRAQMSMLPRLRPRTFYDLVIEIAIVRPGPIQGDMVHPYLRRRDGLEPVSY 624 Query: 664 PDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK-KKPEEMAK 722 + VL+PT G+ ++QEQ +++A V +G++ G AD LRRAM K + + Sbjct: 625 QS-----PDIADVLKPTLGVPIFQEQAIRLAMVAAGFSGGEADRLRRAMASWGKNGNLLQ 679 Query: 723 QRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEF 782 F +G NG + A ++F+ ++ F GYGF +SHSA++A++ Y + WLK H+PA F Sbjct: 680 FEETFIQGMLNNGYELDFAHRLFEQIKGFGGYGFPESHSASFAILCYASSWLKCHHPAAF 739 Query: 783 MAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDG------EIVYGIG 836 A++ + L+ + R G+ +LP D+N + I G Sbjct: 740 YCALLNSQPMGFYSPSQLIQDARRHGIPVLPVDVNHSEAESALEPANSYRTPWAIRLGFT 799 Query: 837 AIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRA 896 IKG+ + I + R + +R++ L R L+R L+KL + A L +R Sbjct: 800 RIKGLDSEAAQRIADNRAQ-QPYRDIQQLARR---SGLSRADLQKLAAADALHSLAGNRH 855 Query: 897 ALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERET 956 QA +F E P + L + T Sbjct: 856 LAHWQAASV------------EAQAGLFD-----DEPPPGDALLTAPPSLEKDLTSDYNT 898 Query: 957 LGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGI 1016 GL L HP+ +E + + + + G+ + AGLV + T +G Sbjct: 899 TGLSLRVHPMGILRQEYP-FSRCKQQRQLSGLSHGRFVQVAGLVTGRQRPGTAKGTL--F 955 Query: 1017 CTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFD------DFSGGLKMTAREV 1070 TL+D +G + V+++ ++Y++ L ++LIV G + D + + + A ++ Sbjct: 956 LTLEDETGNINVVVWKSTQERYRKALLTSKLLIVKGHLERSTPTATTDATPVIHVVAGQL 1015 Query: 1071 MDIDEAREKYA 1081 +D + E A Sbjct: 1016 LDYSDRLESLA 1026 >UniRef50_A7BC77 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BC77_9ACTO Length = 1094 Score = 934 bits (2415), Expect = 0.0, Method: Composition-based stats. Identities = 330/1152 (28%), Positives = 510/1152 (44%), Gaps = 128/1152 (11%) Query: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61 +E R+ L HS ++ +DG + A +V++AA LG+ ALAI D + V+ A AG Sbjct: 3 TERRYAELHAHSAFTFLDGTDEPARMVEEAARLGLDALAILDVDGMYSTVQTTMAARTAG 62 Query: 62 IKPIVGADFNVQCD------------------LLGDELTHLTVLAANNTGYQNLTLLISK 103 + + GA+ + D D L ++AA+ TGY +L +S Sbjct: 63 LPIVYGAELTLAPDALRGIVPGSSAPGWGLAPGAEDPGMRLPIVAASPTGYAHLVGAMSA 122 Query: 104 AYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP 163 G P D L E L++L+GGR G + R+L G +A + + F Sbjct: 123 RALSEPGQRNPRHDLVNLSEAGGELVVLTGGRRGPLMRALRAGGTAPARRVLDGLVDAFG 182 Query: 164 DRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGF 223 L + R DE+ ELA A G +VAT+ R S +I A G Sbjct: 183 CDQVLVEWQAARGDEDEVGDVLAELARASGTRLVATSGARMSSPSKQALGDILTATRLGS 242 Query: 224 TLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT 283 +L++ + +RS EM L P+AL N E+A C +RL LP+ Sbjct: 243 SLNEAEAHLGAHRSF-LRSPAEMARLHGAHPQALDNACEVAAACAFDLRLVAPRLPRTQV 301 Query: 284 GDMST-EDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFL 342 D T + +L EG R P E +E EL VI ++GF GYFL Sbjct: 302 PDGHTPDSWLAHCTYEGASVRYG--------SRAHHPRAWETIEHELGVIERLGFAGYFL 353 Query: 343 IVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDF 402 IV + + + NG+ GRGS A S V Y L IT +D + +LLFERFL+ R PD Sbjct: 354 IVKDIVDFCARNGIL-CQGRGSAANSAVCYCLGITAVDAVRHNLLFERFLSDARSGPPDI 412 Query: 403 DVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL 462 DVD +R++VI++V D +GRD +Q+ T ++ IRDV R LG+P G S Sbjct: 413 DVDIEACRREEVIQYVYDTFGRDRAAQVANVITYRPRSAIRDVARALGYPAGTATAWS-- 470 Query: 463 IPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 + P L D A+ L + R+ G H+GG+V+ + Sbjct: 471 ----------QGRGEVPPLVG------------DAAQALARLPRHMGIHSGGMVLTDQPV 508 Query: 523 TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGE- 581 + P+ V Q+DK D AGLVKFD L L LT + A + + A+ GE Sbjct: 509 SRICPVGWAAMPGRTVLQWDKEDCADAGLVKFDLLSLGMLTALRVAFDELRAGGARAGEA 568 Query: 582 -----------------PPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQ 624 PL + +P +D + +D+L ++T VFQ+ESR + + RL+ Sbjct: 569 SNQLRGWAPRVVEGREGQPLGLHTLPEEDPRVYDLLCAADTVGVFQVESRAQMNTLPRLK 628 Query: 625 PDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGII 684 P CF D++ VAL RPGP+Q V+ ++ R+ GRE+++Y H+ L+P L T G+ Sbjct: 629 PRCFYDIVVEVALIRPGPIQGRSVNPYLRRRSGREKVTY-----LHQLLEPALRQTLGVP 683 Query: 685 LYQEQVMQIAQVLSGYTLGGADMLRRAMGKKK-PEEMAKQRSVFAEGAEKNGINAELAMK 743 L+QEQ+M+IA+ +G + AD LRRAMG K+ PE M + G E+ GI+A + Sbjct: 684 LFQEQLMRIARDAAGLSGARADQLRRAMGAKRSPERMEALKGDLMAGMEERGIDAPTRER 743 Query: 744 IFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDE 803 IF+ ++ FA +GF +SHS ++A + Y + WLK H P F AA++ + LV + Sbjct: 744 IFEQLKGFADFGFPESHSFSFAHIVYASSWLKVHAPEHFYAAILASQPMGFYSPATLVQD 803 Query: 804 CWRMGLKILPPDINSGLYHFHVNDDG------------------------------EIVY 833 R G++++ P +N L V G + Sbjct: 804 ARRHGVRVVGPSVNDSLVDASVQRVGDDEAGESYNPGRPEALPSRGTVALDVDRELAVRI 863 Query: 834 GIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGP 893 G+ ++G+G E I+EAR + G F DL R ++ +EKL M+GA + LG Sbjct: 864 GLSQVRGLG-AVAERIVEARRQ-GAFTSQADLARRAH---VSASAMEKLAMAGALECLGV 918 Query: 894 HRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGE 953 R A A GQ F ++ E + + Sbjct: 919 GRR------EGAWAAGALAQPQARAGQWQPF----LPGTEVGARVPELPSLSEAERMRSD 968 Query: 954 RETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNR 1013 + GL HP + + +R ++ G+++ AG+V + T G Sbjct: 969 VASTGLTPGRHPFSYVRGSLPA--SVLRAGELGQHLTGRIVDIAGVVTHRQRPHT--GGG 1024 Query: 1014 IGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDI 1073 I +L+D +G + V + A K++++ + L+V G + + G + + A + I Sbjct: 1025 ITFLSLEDETGLVNVSVSVGAWKKFRRVCLESSALLVRGTLEW--GDGAISVQAFRIASI 1082 Query: 1074 DEAREKYARGLA 1085 E +R Sbjct: 1083 ALPVEVKSRDFR 1094 >UniRef50_B9JWL2 Error-prone DNA polymerase n=34 Tax=Bacteria RepID=DNAE2_AGRVS Length = 1097 Score = 934 bits (2415), Expect = 0.0, Method: Composition-based stats. Identities = 274/1100 (24%), Positives = 505/1100 (45%), Gaps = 65/1100 (5%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 R+ L+V + +S + G + L + A +LG+ A+ + D +L G+V+ A G++ Sbjct: 2 RYAELQVTTHFSFLRGASSAIELFETAKSLGIDAIGVVDRNSLAGIVRALEASRATGVRL 61 Query: 65 IVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL 124 +VG ++Q + V + T Y L LI+ RG I+ D + + Sbjct: 62 VVGCRLDLQD------GMSILVYPTDRTAYSRLARLITLGKGRGGKDNC-ILMLDDIAQY 114 Query: 125 NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHA 184 EGL+ + + D + E F D +L L RP+++ LH Sbjct: 115 GEGLLGILVPDLAD----------DTCAVQLRKMAEVFGDLAYLSLCLRRRPNDQLRLHE 164 Query: 185 AVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEE 244 +A + V TNDV F + +I I + T+D R +Y++ E Sbjct: 165 LSNMATRFKVKTVVTNDVLFHEPGRRQLQDIVTCIRNNTTIDTVGFERERHADRYLKPPE 224 Query: 245 EMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF-PTGDMSTEDYLVKRAKEGLEER 303 EM LF +AL T+EI RC ++ Y P+ + ++ L + + +R Sbjct: 225 EMERLFPRYRQALRRTMEIVDRCKFSLEELTYQYPEEAIVPRKTAQESLEHYVWQCVPDR 284 Query: 304 LAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRG 363 P + ++ + EL +I++M + YFL V +++++ G+ GRG Sbjct: 285 YPQGLPPKTLQI---------IRHELDLIHKMKYAPYFLTVFSIVRFARAKGIL-CQGRG 334 Query: 364 SGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYG 423 S A S V Y L +T +DP +LLFERF++ ER PD DVDF E+R++VI+ + YG Sbjct: 335 SAANSAVCYILGVTSIDPETNNLLFERFVSQERDEPPDIDVDFEHERREEVIQWIYKTYG 394 Query: 424 RDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPE 483 ++ + T AK IRDVG+ LG P + +S + T + Sbjct: 395 KEKAALCATVNRYRAKGAIRDVGKALGLPEDLIKALSSGMWSWSQETSDRNVREL----N 450 Query: 484 IYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDK 543 + D + + +A++L G R+ G+H GG V+ ++ D P+ + ++DK Sbjct: 451 LNPDDRRLTLTLQLAQQLMGAPRHLGQHPGGFVLTHDRLDDLVPIEPSTMEDRQIIEWDK 510 Query: 544 SDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRS 603 DVE +K D L L LT ++ +I + + + LD+A I +DK +++M+ ++ Sbjct: 511 DDVEALKFMKVDVLALGMLTCMSKVFALIREHKGDD----LDLAKIRQEDKATYEMICKA 566 Query: 604 ETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISY 663 +T FQ+ESR ++ RL+P F D++ VA+ RPGP+Q MV ++ R+ +E++ Y Sbjct: 567 DTLGTFQIESRAQMAMLPRLKPKTFYDLVVQVAIVRPGPIQGDMVHPYLRRREKKEDVDY 626 Query: 664 PDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMG-KKKPEEMAK 722 P L+ VL T G+ L+QE M++A V +G+T G AD LR++M K +++ Sbjct: 627 PT-----PELEAVLGKTLGVPLFQESAMRVAMVCAGFTGGEADQLRKSMATFKFTGGVSR 681 Query: 723 QRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEF 782 + G KNG E A K F +E F YGF +SH+A++AL++Y + ++K H+P F Sbjct: 682 FKEKLVSGMVKNGYTPEFAEKTFSRLEGFGSYGFPESHAASFALIAYASNYVKCHFPDVF 741 Query: 783 MAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDG-----EIVYGIGA 837 AA++ + +V + G+++ P +N + + G + G+ Sbjct: 742 CAALLNSQPMGFYAPAQIVGDARAHGVEVRPVCVNRSRWDCTLERIGTTQQHAVRLGMRM 801 Query: 838 IKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFD-RLGPHRA 896 +KG+ + I+ AR G F + D+ R + L +L + AF L R Sbjct: 802 VKGLVVADVARIVAARM-NGPFDSVDDMWRR---SGVPAASLVELAHADAFQPSLKLARR 857 Query: 897 ALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERET 956 ++ ++ + A + +M + + ++E + + + + Sbjct: 858 DVLWAIKALRD--EPLPLFAAAAEREMKTIAEQNEPEVE-----LRQMTKGHNVVEDYGH 910 Query: 957 LGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGI 1016 +GL L HPI ++ + V ++ G+ + AGLV+ + + +G + Sbjct: 911 IGLTLRDHPIAFLRTDLAK-RNIVTCEEAMTARDGRWVITAGLVLVRQKPGSAKG--VMF 967 Query: 1017 CTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEA 1076 T++D +G ++++ +K ++++ ++ + G++ + + + A+++ D+ Sbjct: 968 ITIEDETGPANIVVWPKLFEKRRRIVLGSSMMAIHGRIQRE--GEVVHLIAQQLFDLTSD 1025 Query: 1077 REKYA-RGLAISLTDRQIDD 1095 A R + L + D+ Sbjct: 1026 LSGLADRDMEFKLPTGRGDE 1045 >UniRef50_Q28S37 DNA polymerase III alpha subunit n=10 Tax=Bacteria RepID=Q28S37_JANSC Length = 1097 Score = 933 bits (2412), Expect = 0.0, Method: Composition-based stats. Identities = 271/1100 (24%), Positives = 474/1100 (43%), Gaps = 74/1100 (6%) Query: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61 + +V L + + +S + G + L A LG L D + G+V+ + A Sbjct: 19 PKADYVELGLTTCFSFLHGASDAVDLATTAHGLGYDKLGCADLNTMAGVVRLHAEALKAQ 78 Query: 62 IKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQR-----GYGAAGPII 116 I P++G + + Y L L+SK I Sbjct: 79 ITPVIGCRLRLVTGE------DFLAYPRDRAAYGRLCTLLSKGKMTDVDGAWQAKGACDI 132 Query: 117 DRDWLIELNEG--LILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTG 174 D L ++ LI L G + P + + Sbjct: 133 TLDDLAGHSKDVQLIALPGP------------RLDHFEAGFKRLIRALPTLRHIAVSYLY 180 Query: 175 RPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNY 234 D+ + ++ LA+A GL ++ATNDVR+ ++ I T+ N Sbjct: 181 EGDDRARINRLDRLAQAHGLGIMATNDVRYHAPDRRPLQDVMTCILHKTTIQKAGFLLNA 240 Query: 235 SPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTED-YLV 293 + +++++S +M +LFA P A+ T IA C +R Y P+ + T YL Sbjct: 241 NAERHLKSPAQMIQLFAQWPHAIRATRAIADACTFDLRELAYEYPKETVPEGRTPQGYLE 300 Query: 294 KRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKD 353 + +G R PD L EL +I +M P YFL + + + +++ Sbjct: 301 ELTWKGAARRYPDGIPDAISTT---------LRKELALIKKMDIPQYFLTIEQIVDYARH 351 Query: 354 NGVP--VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKR 411 P + GRGS A S V Y L IT +DP DLLFERF++ ER PD DVDF E+R Sbjct: 352 KCDPPILCQGRGSAANSAVCYVLGITAVDPNTNDLLFERFISEERKEPPDIDVDFEHERR 411 Query: 412 DQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL 471 ++VI+H+ + YGRD + T + +R+VG+V+G ++K I G Sbjct: 412 EEVIQHIYNRYGRDRAALCATVIHYRPRMAVREVGKVMGLSEDITSALAKTIWGSWGR-- 469 Query: 472 AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCD 531 + E I D + I +A ++ G+ R+ G+H GG ++ K+ + P+ Sbjct: 470 -EVGAREAAEAGIDLKDPLMARTIKLADQMIGMPRHLGQHVGGFILTEKKLNETVPIGNG 528 Query: 532 EEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPL 591 ++DK D++ ++K D L L LT I A ++I + L +A+I Sbjct: 529 AMADRTFIEWDKDDIDELRILKVDILALGMLTCIRKAFDLIKAHYGRT----LTLASIEQ 584 Query: 592 DDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNF 651 D+ ++DML + ++ VFQ+ESR +++ RL+P F D++ VA+ RPGP+Q MV + Sbjct: 585 GDRATYDMLCKGDSLGVFQVESRAQMNMLPRLKPREFYDLVIQVAIVRPGPIQGDMVHPY 644 Query: 652 IDRKHGREEISYPDVQWQH--ESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLR 709 + R+ G+E YP + H E L+ VL T G+ ++QEQ M++A V + ++ A+ LR Sbjct: 645 LRRRAGKEPEDYPSPKPPHDPEELRKVLSRTKGVPIFQEQAMKLAMVAAEFSPDEANQLR 704 Query: 710 RAMG-KKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVS 768 +AM + + + G + E A + F+ ++ F YGF +SH+A++A + Sbjct: 705 KAMATFRSKGTIGELEEKMVSRMINRGYDPEFAHRCFNQIKGFGDYGFPESHAASFAHLV 764 Query: 769 YQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDD 828 Y + W+K HYP F AA++ + +V + G+ + D+N + + Sbjct: 765 YISSWIKCHYPDVFCAALLNSQPMGFYAPAQIVRDAREHGVIVRAADVNYSGWDTTLEPV 824 Query: 829 G----EIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884 G + G I G+ + + I+ AR F +L DL R + + L KL Sbjct: 825 GQGQFAVRLGQRQIDGMRQDVADRIVTAR--HTPFTDLIDLRQRA---QTDAGSLRKLAA 879 Query: 885 SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944 + A + R + A D +F +E ++I Sbjct: 880 ADAMRSMMLDRRQALWETRALHDAQD----------LPLFAEQKDEGDEIRF---DLPEM 926 Query: 945 PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004 P + + +T L L HP++ K +ER G + G+ + AG+V+ + Sbjct: 927 PICEHVVADYQTTRLSLKAHPMSFLRKSMERQ-GYHHTGALAHMRNGQSVKLAGIVLIRQ 985 Query: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLK 1064 + +G + T++D G ++++ ++ +++++ RI+ V G V D + Sbjct: 986 RPGSAKG--VCFITVEDEIGVANLVVWPKVMEAFRKVIMGARIIDVRGVVQRSD--DVIH 1041 Query: 1065 MTAREVMDIDEAREKYARGL 1084 + A + D +A E+ + + Sbjct: 1042 VVAHHLADRSDALERLSNDI 1061 >UniRef50_B7ABG0 DNA polymerase III, alpha subunit n=2 Tax=cellular organisms RepID=B7ABG0_THEAQ Length = 1645 Score = 933 bits (2411), Expect = 0.0, Method: Composition-based stats. Identities = 346/822 (42%), Positives = 481/822 (58%), Gaps = 72/822 (8%) Query: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAAL--GMPALAITDFTNLCGLVKFYGAGHG 59 S+ +F HL H+ +S++DG AK L+K PALA+TD NL G V+FY Sbjct: 3 SKLKFAHLHQHTQFSLLDGAAKLQDLLKWVKETTPEDPALAMTDHGNLFGAVEFYKKATA 62 Query: 60 AGIKPIVGADFNVQCDLLGDE---------LTHLTVLAANNTGYQNLTLLISKAYQRGYG 110 G+KPI+G + V + D HLT+LA + TGYQNL L S+AY G+ Sbjct: 63 MGVKPIIGYEAYVAAESRFDRKRGKGLDGGYFHLTLLAKDFTGYQNLVRLASRAYLEGF- 121 Query: 111 AAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170 P IDR+ L E +EGLI LSG ++ + +L+ L + + Y F DR+F+E+ Sbjct: 122 YEKPRIDREILREHSEGLIALSGCLGAEIPQFILQDRLDLAEARLNEYLSIFGDRFFIEI 181 Query: 171 IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230 G P+++ E A+ GL +VATND ++ D AHE+ +AI TLDDP+R Sbjct: 182 QNHGLPEQQKVNQVLKEFAQRYGLGMVATNDGHYVRKEDARAHEVLLAIQSKTTLDDPER 241 Query: 231 PRNYSPQQYMRSEEEMCELFADIP---EALANTVEIAKRCNVTVRLGE---YFLPQFPTG 284 R + Y+++ EEM + ++ E NTVEIA+ C+V + +G+ Y +P+FP Sbjct: 242 WRFPCDEFYVKTPEEMRAMLPEVEWGDEPFDNTVEIARMCDVDLPIGDKMVYRIPRFPLP 301 Query: 285 DMSTE-DYLVKRAKEGLEERLAF------------------------------------- 306 + TE YL + GL R Sbjct: 302 EGRTEAQYLRELTFLGLLRRYPDRITEAFYREVLRLLGTMPPHGDERVLAEALARVEEKA 361 Query: 307 -------LFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVG 359 L P E R R EL VI +MGFPGYFLIV ++I W++ +GV VG Sbjct: 362 WEELRKRLPPLEGVREWTAEAILHRALYELSVIERMGFPGYFLIVQDYINWARGHGVSVG 421 Query: 360 PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVA 419 PGRGS AGSLVAYA+ IT++DPL F LLFERFLNPERVSMPD D DF +RD+VI++V Sbjct: 422 PGRGSAAGSLVAYAVGITNIDPLRFGLLFERFLNPERVSMPDIDTDFSDRERDRVIQYVR 481 Query: 420 DMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEA 477 + YG D V+QI TFG++A+KA ++DV RV G P+ + ++KLIP G L +A + Sbjct: 482 ERYGEDKVAQIGTFGSLASKAALKDVARVYGIPHKKAEELAKLIPVQFGKPKPLQEAVQV 541 Query: 478 EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHP 537 P+L E DE ++ +I++A +LEG+ R+A HA GVVIA +TD PL D+EG P Sbjct: 542 VPELRAEMEKDERIRQVIEVAMRLEGLNRHASVHAAGVVIAAEPLTDLVPLMRDQEG-RP 600 Query: 538 VTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSF 597 VTQ+D VE GL+K DFLGLRTLT ++ A ++ + + LD +PLDD K+F Sbjct: 601 VTQYDMGAVEALGLLKMDFLGLRTLTFLDEARRIVKESKGVE----LDYDRLPLDDPKTF 656 Query: 598 DMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHG 657 ++L R ET VFQLES GM ++ L+P ED+IALV+L+RPGP++ + +I R HG Sbjct: 657 ELLSRGETKGVFQLESGGMTATVRGLKPRRLEDIIALVSLYRPGPMEH--IPTYIRRHHG 714 Query: 658 REEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKP 717 +E +SY + + L+P+L+ TYGI +YQEQ+MQIA ++GY+LG AD+LRRAMGKK+ Sbjct: 715 QEPVSYAEFPHAEKYLRPILDETYGIPVYQEQIMQIASQVAGYSLGEADLLRRAMGKKRV 774 Query: 718 EEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKS 759 EEM K R F GA++ G+ E A ++FD++E FA YGFNK Sbjct: 775 EEMQKHRERFVRGAKERGVPEEEANRLFDMLEAFANYGFNKC 816 Score = 334 bits (858), Expect = 9e-90, Method: Composition-based stats. Identities = 122/394 (30%), Positives = 201/394 (51%), Gaps = 22/394 (5%) Query: 759 SHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINS 818 SH+AAY+L+SYQT ++KAHYP EFMAA+++ + +++KV + + +G+ +LPPDIN Sbjct: 1241 SHAAAYSLLSYQTAYVKAHYPVEFMAALLSVERHDSDKVAEYIRDARALGIPVLPPDINR 1300 Query: 819 GLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRV 878 + F V + EI++G+ A+K VGE AI+E R +GG F+ L D R + +N+R Sbjct: 1301 SGFDFKVVGE-EILFGLSAVKNVGEMAARAILEERERGGPFKSLGDFLKRLPEQVVNKRA 1359 Query: 879 LEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSY 938 LE L+ +GA D G RA L+ SL L+ A + + G +F E E Sbjct: 1360 LESLVKAGALDAFG-DRARLLASLEPLLRWAAETRERGRSGLVGLFA------EVEEPPL 1412 Query: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERG----KVI 994 P E +L E+E LG+Y++GHP+ +Y R V ++++ RG + Sbjct: 1413 VEASPLDEITMLRYEKEALGIYVSGHPVLRY--PGLREVASCTIEELSEFVRGLPGRPKV 1470 Query: 995 TAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQV 1054 +G+V T+ G + TL D +G LEV++F A + L++D L+V +V Sbjct: 1471 LLSGMVEEVVRKPTRSGGMMARFTLSDETGALEVVVFGRAYEGVSPKLKEDIPLLVLAEV 1530 Query: 1055 SFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIP 1114 L++ A+ V ++E + + L + + +D++ + RL+ L+ H G++P Sbjct: 1531 EK---GEELRVLAQAVWTLEEVL-EAPKALEVEVDHALLDEKGVARLKSLLDEH-PGSLP 1585 Query: 1115 VHLYYQRADARARLRFGATWRVSPSDRLLNDLRG 1148 V+L Q A V + L L Sbjct: 1586 VYLRVQGPFGEALFALRE---VRVGEEALGLLEA 1616 >UniRef50_Q63XR8 Error-prone DNA polymerase n=34 Tax=Proteobacteria RepID=DNAE2_BURPS Length = 1072 Score = 932 bits (2410), Expect = 0.0, Method: Composition-based stats. Identities = 288/1099 (26%), Positives = 491/1099 (44%), Gaps = 65/1099 (5%) Query: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 P + L S++S + G + LV++AA G +AITD +L G + + A G+ Sbjct: 9 PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 68 Query: 64 PIVGADFNVQCDL------LGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIID 117 +VGA F V D G L +LA N GY NL+ LIS + Sbjct: 69 LVVGAYFGVTPDDAAPGHDPGPGAFGLVLLAQNREGYGNLSELISWRRMNAPKGTY-RLT 127 Query: 118 RDWLIELNEGLILLSG---GRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTG 174 L L L G V R + +A+++ F +R L L++ Sbjct: 128 PRMLAAPPRALAHLRGVPDCFAILVPTYPARADVLDAQ--LAWFDALFGERARLGLVQLQ 185 Query: 175 RPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNY 234 R + ++ E RG+ +VA DV S + AI G + + Sbjct: 186 RALDGAHREQVRAAGERRGMHIVALGDVTMHIRSCKPLQDTMTAIRLGMPIAECGHALAP 245 Query: 235 SPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMST-EDYLV 293 + +Q++R+ + + +LF +ALA T + C+ ++ Y P T YL Sbjct: 246 NGEQHLRTRQRIAQLFP--ADALAQTCRMLDACHFSLDDLRYEYPHEIVPAGHTPTSYLA 303 Query: 294 KRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKD 353 + G R PD +R+E EL +I + + YFL V + +++++ Sbjct: 304 QETWAGARRRYPDGVPDT---------VRQRIEFELALIADLKYEPYFLTVYDIVKYARS 354 Query: 354 NGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQ 413 + GRGS A S+V Y L +T+++P + LLFERFL+ ER PD DVDF ++R++ Sbjct: 355 KDIL-CQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFLSRERGEPPDIDVDFEHQRREE 413 Query: 414 VIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAK 473 VI+++ + YG D + T + +R+ G+ LG V+R++K G Sbjct: 414 VIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAKEHRWFDGS--RD 471 Query: 474 AFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEE 533 + + ++ ++A +L R+ +H+GG V++ K+T P+ Sbjct: 472 LLARFASV-GLDPEVPLIRTWAEIAARLLNFPRHLSQHSGGFVVSRGKLTRLVPVENAAM 530 Query: 534 GKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRA--KNGEPPLDIAAIPL 591 V Q+DK D+E GL+K D L L L+ ++ A +MI R P + IP Sbjct: 531 EGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDMITAWRGPPLPDGRPFRLEHIPQ 590 Query: 592 DDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNF 651 DD+ ++DM+ R++T VFQ+ESR ++ RL+P + D++ V++ RPGP+Q G V + Sbjct: 591 DDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRGYYDLVVQVSIVRPGPIQGGAVHPY 650 Query: 652 IDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRA 711 ++R+ ++ ++ + E+L+ VLE T GI ++QEQVMQIA V +G+T G AD LRRA Sbjct: 651 LERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQEQVMQIAIVAAGFTPGEADALRRA 710 Query: 712 MGK-KKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQ 770 M K+ ++ K G + G + E A +IF+ ++ F YGF +SH+A++A ++Y Sbjct: 711 MAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFEQIKGFGEYGFPESHAASFAKLAYA 770 Query: 771 TLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN---- 826 + WLK H PA F+AA++ + LV + R G+ +LP D + + Sbjct: 771 SSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKRHGVTVLPIDATKSGWEASLEAQPG 830 Query: 827 -----DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEK 881 + G+ ++G+GE I A G F + +L R ++ R + Sbjct: 831 AAPPDGRPAVRLGLSLVRGLGEEAARR-IGAARAAGPFASVDELARRACLER--RDLEAL 887 Query: 882 LIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASC 941 + G R AL ++ A + A G E + Sbjct: 888 AAANAFATLAGNRRDALWQAVAAAPERGLLAAAPIDEAVRPALGAPTEADDVF------- 940 Query: 942 QPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVV 1001 + T+GL L HP+ ++ + G++ A GLV Sbjct: 941 ----------ADYRTIGLTLNRHPVALLRPALDA-RRLSSAAALRDRRNGRLARACGLVT 989 Query: 1002 AARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSG 1061 A ++ T +G + TL+D +G + V++ + L++ ++ ++L VSG + S Sbjct: 990 ARQMPGTAKG--VLFVTLEDETGCVNVIVRPELLERQRRETLDSQLLAVSGVWQCE--SD 1045 Query: 1062 GLKMTAREVMDIDEAREKY 1080 + A+ + D+ Sbjct: 1046 VRHLVAQYLEDLTPLIAGL 1064 >UniRef50_A1BA11 DNA polymerase III, alpha subunit n=6 Tax=Alphaproteobacteria RepID=A1BA11_PARDP Length = 1077 Score = 931 bits (2407), Expect = 0.0, Method: Composition-based stats. Identities = 269/1093 (24%), Positives = 477/1093 (43%), Gaps = 76/1093 (6%) Query: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61 +V L V S +S + G + L A +G AL I D +L G+V+ + Sbjct: 20 PPADYVELAVTSAFSFLHGASHPRELALAAHLMGYDALGIADLNSLAGVVRLHATAKKLH 79 Query: 62 IKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQR-----GYGAAGPII 116 ++P++GA + T + Y L LI+K + + Sbjct: 80 LRPVIGARIVLAD------GTAFLAYPTDRAAYGRLASLITKGRRHDLAGNWQKKGRCDL 133 Query: 117 DRDWLIELNEG--LILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTG 174 + L +G LI L G + + LR L ++ Sbjct: 134 NLADLATHAQGMRLIWLPGDDLSPLPDLALR-LPQLSHVAASWL---------------Y 177 Query: 175 RPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNY 234 R D+ + ++ A+A GL +VA NDV + ++ I +G T+ Sbjct: 178 RGDDRARINRLDRAAQAAGLSIVAVNDVHYHAPDRRPLQDVMTCIREGTTIARAGLLLAQ 237 Query: 235 SPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLV 293 + +++++ EM LFAD P A+ T EIA C ++ +Y P+ + + +L Sbjct: 238 NAERHLKPPAEMVRLFADWPHAIRATREIADSCRFSLDELQYEYPRESVPPGLTPQQHLE 297 Query: 294 KRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKD 353 +G + R PD+ L EL +I + YFL + + +++++D Sbjct: 298 NLTWQGADWRYPAGVPDK---------VRATLIKELALIREKKIAQYFLTIHDIVRFAED 348 Query: 354 NGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQ 413 + GRGS A S V Y L IT +DP + +LLFERF++ R PD DVDF E+R++ Sbjct: 349 RAIL-HQGRGSAANSAVCYVLGITPVDPAKHELLFERFISQNRKEPPDIDVDFEHERREE 407 Query: 414 VIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAK 473 VI+H+ D Y RD T ++ IR+VG+V+G ++ + G ++ Sbjct: 408 VIQHIYDRYRRDRAGLCATVIHYRPRSAIREVGKVMGLSEDVTSALADTVWGSWGKDMSA 467 Query: 474 AFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEE 533 A + + D ++ + +A ++ G+ R+ +H GG V+ +++ P+ Sbjct: 468 A---DTMQAGLDLGDPLLRRTVRLAEEMIGMPRHLSQHVGGFVLTEGPLSETVPIGNAAM 524 Query: 534 GKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDD 593 ++DK D++ ++K D L L LT I +I K L ++ DD Sbjct: 525 PDRSFIEWDKDDIDELHILKVDVLALGMLTCIRKCFALIKAHYGK----VLTLSDFDHDD 580 Query: 594 KKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFID 653 + ++ MLQR ++ FQ+ESR ++ RL+P F D++ VA+ RPGP+Q MV ++ Sbjct: 581 QPTYKMLQRGDSIGTFQVESRAQMAMLPRLKPKRFYDLVIQVAIVRPGPIQGNMVHPYLR 640 Query: 654 RKHGREEISYPDVQWQHE-SLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAM 712 R+ G E + +P + LK +L T G+ ++QEQ M+IA V + +T D LR+AM Sbjct: 641 RRAGLETVDFPGPRDGDPDELKNILFRTEGVPIFQEQAMKIAMVAAEFTPNEVDDLRKAM 700 Query: 713 G-KKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQT 771 + + + + + G + A + F+ ++ F YGF +SH+AA+A ++Y + Sbjct: 701 ATFRSRGTIGQLQDRMVGKMVERGYTRDFAERCFNQIKGFGDYGFPESHAAAFAHLAYVS 760 Query: 772 LWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVND-DG- 829 WLK H+PA F AA++ + +V + G+ +LP D+N + + DG Sbjct: 761 AWLKCHHPAAFAAALLNSQPMGFYAPAQIVRDARDHGVTVLPADVNISEWDNTLEPCDGT 820 Query: 830 -EIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAF 888 + G+ I G+ E E I +AR++ + +L DL R L+ R + + + Sbjct: 821 FALRLGLRQIDGLPEALAERIKQARHE--PYADLADLKTRA---GLDARAIRLIAAADGL 875 Query: 889 DRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQV 948 +G R A + + +FG E PE + P Sbjct: 876 RSMGLDRRAGLWQARAL----------RDAPELPLFGRRDEGPE----PAVTLPAMPLYE 921 Query: 949 VLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVT 1008 + + +TL L L HP+ + + G V + + AG+V+ + + Sbjct: 922 HVTADYQTLRLSLKAHPMRFLRRSLTAQ-GYVPAAGLAALSNRSRLRMAGIVLVRQRPGS 980 Query: 1009 KRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAR 1068 G TL+D +G ++++ ++++++ R+L V GQ+ + G + A Sbjct: 981 ANGT--CFVTLEDETGVANLVVWEKTFAQFRKVVMTARLLEVHGQLQRAE--GVTHIVAH 1036 Query: 1069 EVMDIDEAREKYA 1081 + D EA + A Sbjct: 1037 WLGDRSEALLRLA 1049 >UniRef50_D0MJZ2 DNA polymerase III, alpha subunit n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MJZ2_RHOM4 Length = 1607 Score = 930 bits (2403), Expect = 0.0, Method: Composition-based stats. Identities = 309/725 (42%), Positives = 441/725 (60%), Gaps = 37/725 (5%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 RF HL H+ YS++DG A+ L+++AA + A+AITD NL G+ +FY GI+P Sbjct: 3 RFSHLHCHTQYSLLDGAARIQTLLERAAEYEIEAVAITDHGNLFGVPEFYRTAEKIGIQP 62 Query: 65 IVGADFNVQCDLLGDE----LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 I+G +F + D H +LA N TGY+NL L S +Y GY P ID + Sbjct: 63 IIGCEFYLTPTSRHDRNERTRYHQVLLAKNETGYRNLIKLSSLSYLEGY-YYKPRIDHEL 121 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 180 L + +EGLI + G++ +++L + +Y E F + Y++E+ G P+++ Sbjct: 122 LTQYHEGLIATTCCLQGEIPQTILHKGEEAARKLFEWYLELFGEDYYIEIQDHGLPEQKK 181 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 + A G+ V+ATNDV ++D +DF+ H++ + + G + DP R R + Q Y+ Sbjct: 182 INAILLRWAREYGVRVIATNDVHYVDRTDFEPHDVLLCLQTGKDMSDPSRLRFDNDQFYL 241 Query: 241 RSEEEMCE-LFADIP-----EALANTVEIAKRCNVTVRLGEYFLPQFPTG---DMSTEDY 291 +S EM + L +DI E +ANT E+A +C + G+ +P +P + + Y Sbjct: 242 KSPAEMRQALLSDIEPRLVDEMMANTGEVADKCRFQLPTGKLLMPHYPIPPEYNGDMDAY 301 Query: 292 LVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWS 351 L EG R P E ERLE EL +I +MGF GYFLIV +F + Sbjct: 302 LRDLVFEGARRRYGDPLPH---------EVAERLEHELAIIKKMGFAGYFLIVQDFTTAA 352 Query: 352 KDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKR 411 + GV VGPGRGS AGS VAY L IT++DPL++DLLFERFLNPERVSMPD D+DF R Sbjct: 353 RRLGVRVGPGRGSAAGSAVAYCLGITNIDPLKYDLLFERFLNPERVSMPDIDIDFDDRGR 412 Query: 412 DQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL 471 +VI++V YGR+ V QIITFGTM AK IRDV RVLG P DRI+KLIP P +TL Sbjct: 413 GKVIDYVVQKYGRENVCQIITFGTMGAKMAIRDVARVLGIPLAEADRIAKLIPDGPKVTL 472 Query: 472 AKAFEAEPQLPEIYEA-DEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAP--L 528 A+A+E P+L + E+ D +++ L+ A LEG R+ G HA GV+IAP +++D+ P + Sbjct: 473 AQAYEEVPELRALKESNDPQIRKLLHYAEVLEGSVRHTGVHAAGVIIAPGRVSDYVPVAV 532 Query: 529 YCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAA 588 ++ TQ+D +E GL+K DFLGL+TLTI+N AL++I + +D+ Sbjct: 533 AKGKDNDTVTTQYDGKWIEEFGLLKMDFLGLKTLTILNDALQLIKENHGIE----IDLDQ 588 Query: 589 IPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMV 648 IPLDD K+F++ QR ET A+FQ ES GM++ +++L+P +D+IA+ AL+RPGP+ + Sbjct: 589 IPLDDPKTFELFQRGETVAIFQFESEGMREWLRKLKPTSIDDLIAMNALYRPGPMDL--I 646 Query: 649 DNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADML 708 N+I RKHG E + YP H L+PVL+ TYGI +YQEQVMQ+AQV++GYTLG AD+L Sbjct: 647 PNYIARKHGLEPVEYP-----HPLLEPVLKNTYGIPIYQEQVMQMAQVMAGYTLGQADLL 701 Query: 709 RRAMG 713 RR + Sbjct: 702 RRCVA 706 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 166/474 (35%), Positives = 251/474 (52%), Gaps = 31/474 (6%) Query: 712 MGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQT 771 MGKKK EEM K R +F GA + G++AE A +FD++EKFAGYGFNKSHSAAY++V+YQT Sbjct: 1128 MGKKKVEEMKKHREIFVAGAAERGVDAETANAVFDMMEKFAGYGFNKSHSAAYSIVAYQT 1187 Query: 772 LWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEI 831 +LKA+YPAEFMAA MT++M +T+K+ ++DE RMGL++LPP IN HF V DG I Sbjct: 1188 AYLKANYPAEFMAAAMTSEMGDTKKLAVVLDEARRMGLELLPPSINRSQAHFTVE-DGRI 1246 Query: 832 VYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRL 891 +G+GAIKGVG G IEAI++AR K G FR +FDL D + +N++VLE L +GA D L Sbjct: 1247 RFGLGAIKGVGLGAIEAILKAREKHGPFRTIFDLIRHLDLRVVNKKVLESLARAGALDEL 1306 Query: 892 GPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLD 951 HRA L+ ++ A++ A + GQA +FG + QPW L Sbjct: 1307 EGHRAQLVEAIDLAVQYAQKVQADRMAGQASLFGESGTRTALPPPNLPVVQPWSRARCLK 1366 Query: 952 GERETLGLYLTGHPINQYLKEIERYVGGV------RLKDMHPTERGK------------- 992 ERE +G Y+TGHP+ Y E+ + L++ G Sbjct: 1367 EERELIGFYVTGHPLEAYRAEVNAFATTTLAELSRTLEEADMPRNGSTNGHTNGTTNGHA 1426 Query: 993 ------VITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDR 1046 G++ + + + G + +++D +G+ E+++F+ L++ LE D Sbjct: 1427 YRPARPRHRICGIITEVQRRIGRNGRPLAFASIEDFTGQGELVIFSSVLERVMPYLEVDA 1486 Query: 1047 ILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLE 1106 +++V GQV G +K+ E+ + + R++ L + L Q+ + L+R Sbjct: 1487 VVLVEGQVEV--RGGSVKVLVDELWPMWKVRDELVEALVVQLDLEQVRPEQLDRFHALCR 1544 Query: 1107 PHRSGTIPVHLYYQRAD--ARARLRFGATWRVSPSDRLLNDLRGLIGSEQVELE 1158 H +G ++ D + V +D L+ L G+E + LE Sbjct: 1545 EH-AGRCKLYFDLLSPDFPGGRQRLLSRRCLVELNDTLMQQTLRLFGAEAIRLE 1597 >UniRef50_B5EJ94 DNA polymerase III, alpha subunit n=3 Tax=Acidithiobacillus RepID=B5EJ94_ACIF5 Length = 1020 Score = 928 bits (2398), Expect = 0.0, Method: Composition-based stats. Identities = 276/1082 (25%), Positives = 475/1082 (43%), Gaps = 75/1082 (6%) Query: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 P + L S S + G + L+ +A ALG ALAIT+ +L + + G Sbjct: 7 PEYAELHCLSALSFLRGASAVEDLLDRAQALGYRALAITEECSLGSAARAHSHACNIGFP 66 Query: 64 PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIE 123 I+G++ + + +L + GY L+ I++A R L E Sbjct: 67 LILGSEIALTD------GPRIVLLVQEHDGYVALSRFITRARGRAGKGHY-QARMADLPE 119 Query: 124 LNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLH 183 L L ++ + + + +L D+ + L Sbjct: 120 LVGCLAIILPDSQSL--------RFDVAGAIAVR-DCLGAENVWLGAELLRGGDDAAQLR 170 Query: 184 AAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSE 243 +E A +P +A DV S ++ AI L D + ++++R Sbjct: 171 EVLEQGRALNIPCLACGDVHMDRRSRRFLQDVLTAIRLRRPLADLGWALARNGERHLRPR 230 Query: 244 EEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTG-DMSTEDYLVKRAKEGLEE 302 + E++ PE L T+ +A+RC ++ Y P D +DYL + A++GL+ Sbjct: 231 SVLAEIYP--PELLVETLRVAERCQFSLDSLVYRYPDGACPADQQRDDYLAELARQGLQR 288 Query: 303 RLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGR 362 R +LE EL ++ ++ + GYFL V + ++++K G+ GR Sbjct: 289 RYPQGV---------ATVVATQLEAELALVRELDYAGYFLTVHDIVRFAKGRGIL-CQGR 338 Query: 363 GSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMY 422 GS A S++ YAL IT++DP LLF RF++ +R PD DVDF E+R++VI++V Y Sbjct: 339 GSAANSVICYALGITEVDPSRMQLLFARFISRDRREPPDIDVDFEHERREEVIQYVFQHY 398 Query: 423 GRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLP 482 GRD + T ++ +RD R LG + R+++ + G + Q Sbjct: 399 GRDHAALTATIIHYRPRSAMRDAARALGFAPVEIQRLTQGLAWWDGRQIRP---ERLQEQ 455 Query: 483 EIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFD 542 ++ L+ + L G R+ +H GG+V++ T + P+ + V Q+D Sbjct: 456 GFDPTSPTIQRLVTVVNALVGFPRHLSQHVGGMVLSATPLNALVPIEPAAMAERAVIQWD 515 Query: 543 KSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQR 602 K D++ G++K D L L L+++ AL+ + + +A IP +D ++ MLQR Sbjct: 516 KDDLDVLGILKVDILALGMLSVLRRALD----------DLGMTLADIPAEDPATYAMLQR 565 Query: 603 SETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEIS 662 E+ VFQ+ESR ++ RL+P CF D++ VA+ RPGP+Q MV ++ R+ G E + Sbjct: 566 GESLGVFQVESRAQMSMLPRLKPRCFYDLVIEVAIIRPGPIQGDMVHPYLRRRQGLEPVR 625 Query: 663 YPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK-KKPEEMA 721 YP +K VLE T G+ ++QEQVMQIA +G++ AD LRRAM ++ + Sbjct: 626 YPG-----PEVKKVLERTLGVPIFQEQVMQIAIDAAGFSGDEADGLRRAMAAWRRKGHLG 680 Query: 722 KQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAE 781 G G + A ++ ++ FA YGF +SH+A++AL+ Y + W+K H+PA Sbjct: 681 PYSDRLIRGLRLRGYSEAFAQRLCQQIQGFAEYGFPESHAASFALLVYASAWIKCHHPAI 740 Query: 782 FMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGV 841 F AA++ + +V E R G+++L DI + V DG + G+ IKG+ Sbjct: 741 FAAALLNSQPMGFYAPAQIVQEARRCGVEVLSVDICHSDWDCKV-QDGALRLGLCLIKGM 799 Query: 842 GEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNS 901 E ++ R +GG R L+ L +L +GA L R + + Sbjct: 800 SPKEAERLLHWRAQGGALHSE---ALR-HGLGLSAAALHQLAYAGALSSLHGDRHQALWA 855 Query: 902 LGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYL 961 + Q + A + + + + + LGL L Sbjct: 856 V-----------------QGSLPLPTALPMPVVPEQAPALPAETSAAACIADYQQLGLSL 898 Query: 962 TGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDD 1021 HP+ +L+E G R+ ++ + AGLV + T G TL+D Sbjct: 899 GPHPL-HFLRERIAQSGYRRIAEVRLQHHDRPDRLAGLVTHRQRPGTAHGT--VFLTLED 955 Query: 1022 RSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYA 1081 SG + V+++ ++ +++ L + R+L + G++ L A + D+ + Sbjct: 956 ESGMINVIVWPQRVEGWRRALLQGRLLGIGGRLERQ--GVSLHFIADAMEDLSPWLGTLS 1013 Query: 1082 RG 1083 Sbjct: 1014 TR 1015 >UniRef50_B5JLP8 DNA polymerase III, alpha subunit subfamily, putative n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JLP8_9BACT Length = 1088 Score = 927 bits (2397), Expect = 0.0, Method: Composition-based stats. Identities = 293/1130 (25%), Positives = 499/1130 (44%), Gaps = 121/1130 (10%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 +V L S +S + G ++ L + A G+ A+A+ D G +F+ A G+K I Sbjct: 4 YVELHGRSAFSFLRGASQPDELAEACADRGVAAMAVCDRGGFYGSARFHAACREMGVKGI 63 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125 VG + + L V+ GYQ+L +++ + G + L+ Sbjct: 64 VGCELPMVDGSA------LPVVVKTRAGYQSLCRILTDMHLSAAKGEG-RLAWGDLVGRT 116 Query: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRTGRPDEESYLHA 184 EGL+ L+G G + R G+ + + VA + F F+EL R EE + Sbjct: 117 EGLVALTGDEDGVLRRYWDLGDRDGMRDRVAELKGLFGAGNVFVELQRRHERGEERLVSG 176 Query: 185 AVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEE 244 +LAEA G+ +VATN V + + ++ + + +LD + + Q+++++ Sbjct: 177 LRDLAEAEGVSMVATNGVSYARPAGRALMDVFTCLREKVSLDGAGALLSRNGQRFVKAPA 236 Query: 245 EMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTED-YLVKRAKEGLEER 303 EM LF DIPEA+ NT+ IA++ + Y P + + D +L K G +R Sbjct: 237 EMRHLFRDIPEAVDNTLRIAEQVEFGLENLGYEFPSYGVPRGESMDTFLKKVVWAGARKR 296 Query: 304 LAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRG 363 ++ ++E EL VI ++GF GYFLIV + + + +DNG+ GRG Sbjct: 297 FKGEPNEKT---------RRQMEHELAVIAKLGFSGYFLIVWDLVNFCRDNGIM-AQGRG 346 Query: 364 SGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF-CMEKRDQVIEHVADMY 422 S A S+V + L+IT +DP+ LLFERFLN ER S PD D+D E+R+ VI+ V Y Sbjct: 347 SAANSVVCFCLEITPVDPVGAGLLFERFLNEERRSWPDIDIDLPSGERREMVIQEVYRRY 406 Query: 423 GRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIP---PDPGMTLAKAFEAEP 479 GR + T K+ R++G+VLG + R S L + G+ LA E Sbjct: 407 GRHGAAMTANVITYRRKSAAREIGKVLGFDEEVLGRFSSLFGGHNYEHGVELADQLEKS- 465 Query: 480 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 539 + + +AL + ++ G+ R+ G+H+GG+VI + PL V Sbjct: 466 ---GVTKEHPRARALAKLCEQVLGLPRHLGQHSGGMVICQGALDTVVPLEPASMPGRSVC 522 Query: 540 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 599 Q+DK+D E G+VK D LGL + ++ +E +N +++A IP DD +F+M Sbjct: 523 QWDKNDCEDLGIVKVDLLGLGMMAVMQDTIETLN-----TKGVDIELATIPKDDVVTFEM 577 Query: 600 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 659 +QR++T VFQ+ESR + R++P F D++ V + RPGP+Q MV +++R+ Sbjct: 578 MQRADTVGVFQIESRAQIATLPRMKPKTFYDVVVEVGIIRPGPIQGKMVHPYLERREDPS 637 Query: 660 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMG--KKKP 717 +I Y D L+ VLE T G+ L+QEQ++++A V++ ++ A+ LRRA+ Sbjct: 638 KIEYID-----PRLEEVLERTLGVPLFQEQILKVAMVMADFSGAEAEELRRAVSTFSTNE 692 Query: 718 EEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAH 777 + M K + G+ + V FA YGF +SH+ ++ L++Y + +LK H Sbjct: 693 KRMNKVLGKLVGAMRERGVEETKVEDVVRAVSSFAHYGFPESHAISFGLLAYASTYLKCH 752 Query: 778 YPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHF--------HVNDDG 829 Y AEF ++ L+ + RMG+++LP + + V G Sbjct: 753 YAAEFFVGLLNNQPMGFYAPATLIQDAKRMGIRVLPVCVVESRWECGAAGAAWEKVEGGG 812 Query: 830 ----------------------------------------------EIVYGIGAIKGVGE 843 EI G+ +KG+ Sbjct: 813 MKDEVDRVEGVMATKRHEEARRGDGDLMATKRHEKARKCEGGDRVGEIRLGLVMVKGLSR 872 Query: 844 GPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLG 903 +A++ R + G FR L D RT + N+ L L GA + R + + + Sbjct: 873 ERGKALVAER-ERGAFRSLKDFRFRT---RFNKEELRMLASIGALNCFCGDRRSALWEVE 928 Query: 904 DALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTG 963 L + E++ + + L + +G+ + Sbjct: 929 TLLD-----------------EDDLFAFVEEEEALSPLEVMTHLERLQADYAGVGVTVGK 971 Query: 964 HPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRS 1023 HP+ ++ G R D+ T G + AG V+ + T +G +L+D + Sbjct: 972 HPMASLRGQLG---GVRRACDLDTTSNGSRVKVAGQVICRQRPGTAKG--FVFISLEDET 1026 Query: 1024 GRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDI 1073 G V++ +K + + +++ LI+SG + G + A + + Sbjct: 1027 GISNVIVVPKLFEKSRLTITQEKFLIISGVLQRAK--GVTHVKADRIEAL 1074 >UniRef50_D0IVK9 DNA polymerase III, alpha subunit n=5 Tax=cellular organisms RepID=D0IVK9_COMTE Length = 1136 Score = 926 bits (2395), Expect = 0.0, Method: Composition-based stats. Identities = 275/1099 (25%), Positives = 471/1099 (42%), Gaps = 103/1099 (9%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65 + L S +S + G + A LV +A +LG ALA+TD ++ G V+ + A + + I Sbjct: 40 YAELHCLSHFSFLRGASSPAELVHRAKSLGYAALALTDECSVAGAVRAHEAARDSDLHLI 99 Query: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG---PIIDRDWLI 122 G++F + VL + G+ NL I+ A R L Sbjct: 100 HGSEFAW-------GPLRIVVLVRDLQGWGNLCEFITVARSRAAKGEYLVDESSPWQLLQ 152 Query: 123 ELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDR-YFLELIRTGRPDEESY 181 + E L+L L + V C+ HF +L + PD+ + Sbjct: 153 QGCECLLL-------PQREQLDASDLIAVTACLENVAAHFSTNILWLGVELHLAPDDSLW 205 Query: 182 LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241 L + GLP++A DV S ++ AI G T+ + + ++++R Sbjct: 206 LQTLQQAGVVLGLPLLACGDVHMHARSRKPLQDVVTAIRLGRTVAECGFALQPNAERHLR 265 Query: 242 SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPT-GDMSTEDYLVKRAKEGL 300 S + L+ L T+E+A RC+ ++ Y PQ M+ L +G Sbjct: 266 SRLRLASLYPWA--MLEATLELAGRCSFSLDEIRYHYPQESVLPGMTATQTLAWLTWDGA 323 Query: 301 EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360 R P++ ++L EL +I + YFL V + +++++ G+ Sbjct: 324 AGRYPQGIPED---------VHDQLHKELALIEDQKYEMYFLTVHDIVRYARSVGIL-CQ 373 Query: 361 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420 GRGS A S V Y L IT +DP +LLFERF++ ER PD DVDF +R++VI+++ Sbjct: 374 GRGSAANSAVCYCLGITAVDPENNNLLFERFISKERSEPPDIDVDFEHARREEVIQYIYG 433 Query: 421 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPD-------------- 466 YGRD + +++ +RDVG+ LG P +D ++K Sbjct: 434 KYGRDRAALTAVVSCWRSRSALRDVGKALGLPADLIDALAKGQYWFSEHAQAQAQTHAEA 493 Query: 467 ----PGMTLAKAFEAEPQLPEIYEAD------------EEVKALIDMARKLEGVTRNAGK 510 +A + + EA+ ++ I++A +L+ R+ + Sbjct: 494 ADSAEEEQAPEALPEDWVQRKFQEAEVLAREMNCAVGAHRLRLWIELAWQLKDSPRHLSQ 553 Query: 511 HAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALE 570 H GG V+ K+T P+ K V Q+DK D++ GL+K D L L LT++ AL Sbjct: 554 HVGGFVLTEGKLTRLVPVEPATMAKRSVIQWDKDDLDVVGLLKVDVLALGMLTMLRNALN 613 Query: 571 MINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFED 630 + R P + IP +D +++M+ +++T FQ+ESR ++ RLQP F D Sbjct: 614 ERTRWRG----EPWGLHQIPQEDAATYEMICQADTVGTFQIESRAQMSMLPRLQPRTFYD 669 Query: 631 MIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQV 690 ++ VA+ RPGP+Q GMV ++ + ++ + L L+ T G+ ++QEQV Sbjct: 670 LVVEVAIVRPGPIQGGMVHPYLLAR--ERARRKLPLKLEKPELANALKRTLGVPIFQEQV 727 Query: 691 MQIAQVLSGYTLGGADMLRRAMGK-KKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVE 749 MQIA + ++ G AD LRR+M K+ + K +G G E A IF + Sbjct: 728 MQIAMDAAKFSAGKADELRRSMAAWKRKGGVHKFERPLIDGMVARGYKLEFAQAIFAQML 787 Query: 750 KFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGL 809 F YGF +SH+ ++AL++Y + WLK H PA F+ A++ A LV + R G+ Sbjct: 788 GFGEYGFPESHAYSFALLAYASAWLKRHEPAIFLQALLNAQPMGFYSPSQLVQDARRHGV 847 Query: 810 KILPPDINSGLYHFHVN-----------DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGY 858 ++LP D+ +H + + G+ + +G+ I + Sbjct: 848 RVLPVDVCHSHWHCTLEAPLQAMRGVAQPQPAVRLGLNRVARLGKAAALRIEGEAAQA-P 906 Query: 859 FRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAI 918 ++++ DL R +L++ +E L + A L HR M +A Sbjct: 907 WKDVSDLAMRA---RLDKADMEALAAADALRSLAGHRRQQMW---------------DAA 948 Query: 919 GQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVG 978 QA + + A+ I + E + + GL L HP+ + R+ G Sbjct: 949 AQASLPPIFAQA--AIHEPRLELPQAAEGEEIMFDYAATGLSLRRHPLALLRPRLARH-G 1005 Query: 979 GVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKY 1038 ++ G+ + A G+V + T G TL+D +G + +++++ ++ Sbjct: 1006 LKTAAELRHMLPGQKVRACGIVTVRQRPPTANGTL--FITLEDETGVINLVVWSQTFARW 1063 Query: 1039 QQLLEKDRILIVSGQVSFD 1057 + L R+L V G Sbjct: 1064 RSALLASRLLAVEGIWQRS 1082 >UniRef50_C1CZH7 Putative DNA-directed DNA polymerase (DNA polymerase III, alpha subunit) n=2 Tax=Bacteria RepID=C1CZH7_DEIDV Length = 1341 Score = 923 bits (2385), Expect = 0.0, Method: Composition-based stats. Identities = 352/871 (40%), Positives = 512/871 (58%), Gaps = 34/871 (3%) Query: 305 AFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGS 364 K R E EL VIN MGFP YFLIV ++I W+KD + VGPGRGS Sbjct: 464 GNDEETTRAHHKHALVILRRAEYELSVINNMGFPDYFLIVADYINWAKDQDISVGPGRGS 523 Query: 365 GAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGR 424 GAGSLVAYA++IT+LDPLEF LLFERFLNP+R+SMPDFD+DF +R +VI +V D YG Sbjct: 524 GAGSLVAYAMRITNLDPLEFALLFERFLNPDRISMPDFDIDFNDARRSEVIAYVQDKYGE 583 Query: 425 DAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGM--TLAKAFEAEPQLP 482 D V+QI TFGTMA+KA ++DV RV+G Y VD++SKLIP G +L +A EA P + Sbjct: 584 DKVAQIATFGTMASKACLKDVARVMGLEYAKVDKVSKLIPIKFGKSYSLEQAREAVPDIA 643 Query: 483 EIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFD 542 ++ D ++ + A+KLEG+TR+A HA GVVI T++TD P+ D G+ V Q+D Sbjct: 644 QMLAEDGQLLEAYEFAQKLEGLTRHASVHAAGVVIGKTQLTDLVPVMRDTSGEGMVCQYD 703 Query: 543 KSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQR 602 VE GL+K DFLGLRTL+ ++ A ++ + R +D AIP DD ++++++ R Sbjct: 704 MKAVEDIGLIKMDFLGLRTLSFLDEARRIMRESRGIE----IDFDAIPFDDARTYELMSR 759 Query: 603 SETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEIS 662 +T VFQLE G+ D +RL+P D+IAL AL+RPGP++ + ++ R HG EE+ Sbjct: 760 GDTKGVFQLEGAGIADASRRLKPRRLADIIALSALYRPGPME--NIPTYVRRHHGLEEVD 817 Query: 663 Y--PDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM 720 Y + L+ +L TYGI +YQEQ+MQIA ++G++LGGAD+LRRAMGKK EEM Sbjct: 818 YVRDGFPTSAKYLEKILAETYGIPVYQEQIMQIASEVAGFSLGGADLLRRAMGKKDAEEM 877 Query: 721 AKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA 780 +QR +F EGA NG+ E A K+FDL++ FA YGFNKSHSAAY +++YQT WLKA+YP Sbjct: 878 KRQRQIFVEGAGNNGVPKEEANKLFDLLDAFANYGFNKSHSAAYGVITYQTAWLKANYPV 937 Query: 781 EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG 840 EFMAA++T + +++KV V + +M + +LPPDIN F V + EI++G+ AIKG Sbjct: 938 EFMAALLTVERRDSDKVAEYVSDARKMDVHVLPPDINRSAPDFAVEGE-EILFGLYAIKG 996 Query: 841 VGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMN 900 +GE ++ I+E R + G ++ L D C+R K NR+ +E LI SGAFD+ G R L++ Sbjct: 997 LGEAAVQRILEERQRAGRYKSLADFCSRLGNKVCNRKAMESLIKSGAFDQFGE-RNQLLH 1055 Query: 901 SLGDALKAADQHAK---AEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETL 957 SL DAL+ A A A G + MFG+ EE ++ + P+ + L E+E L Sbjct: 1056 SLEDALEDAASTADINAKAASGMSMMFGM--EEVKKERPLRSGIPPFTDLERLSIEKEAL 1113 Query: 958 GLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVI--------TAAGLVVAARVMVTK 1009 GLY++GHP+ Q+ R R+ D+ + + AG++ TK Sbjct: 1114 GLYISGHPLEQHEG--LREAASCRISDLDTWFTQQNVAPGKRLKAVLAGMIEGVVKKPTK 1171 Query: 1010 RGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTARE 1069 G + L D SG+ E++ F+ A D+ Q+ L D +V V + GGL+ A E Sbjct: 1172 SGGMMARFILADESGQTELVAFSRAYDRIQEKLVNDTPALV--IVELESEDGGLRAIAEE 1229 Query: 1070 VMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLR 1129 V+ +++ + + + +++ + + L+ H +G++P +L + + + Sbjct: 1230 VVSVEQL-AEVPKVMYVTIDLENASPDAVGEFQSILDEH-AGSMPTYLRLETPEQFVLYQ 1287 Query: 1130 FGATWRVSPSDRLLNDLRGLIGSEQVELEFD 1160 S + L L +D Sbjct: 1288 LDHGMG---SHEAIRVLNQTFPWADAYLAYD 1315 Score = 318 bits (816), Expect = 7e-85, Method: Composition-based stats. Identities = 104/324 (32%), Positives = 155/324 (47%), Gaps = 23/324 (7%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALG----MPALAITDFTNLCGLVKFYGAGHGA 60 RF HL H+ YS++DG AK L+K A + PALA+TD N+ G V FY A Sbjct: 33 RFAHLHQHTQYSLLDGAAKLKDLLKWAKEVTPEGCTPALAMTDHGNMHGAVHFYNYAQAA 92 Query: 61 GIKPIVGADFNVQC-----------DLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109 G+KPI+G + V + HLT+LA + GYQNL L S+ Y GY Sbjct: 93 GVKPIIGYEAYVVPGQGTRRDRTRAQDGEKGIFHLTLLARDFEGYQNLCRLSSRGYTEGY 152 Query: 110 GAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLE 169 P ID + L E ++G+I SG +V + LL+G + + +Y E F + Y++E Sbjct: 153 -YYKPRIDHELLQEHHKGVIAFSGCLGSEVQQLLLQGREEDAKKRLLWYRELFGENYYIE 211 Query: 170 LIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPK 229 + G P+++ A+ G+ +VATND ++ SD AHE +AI TL D Sbjct: 212 IQDHGLPEQKRNNPILRAWAQELGIGMVATNDGHYVKKSDATAHETLLAIQTKATLADEN 271 Query: 230 RPRNYSPQQYMRSEEEMCELFA---DIPEALANTVEIAKRCNVTVRLGE---YFLPQFPT 283 R + + Y+++ EEM E NT IA CNV + +G+ Y +P P Sbjct: 272 RFKFPCDEFYVKNLEEMQAALPVSDWGEEPFDNTSAIADLCNVDLPVGKKRVYQMPALPI 331 Query: 284 GDM-STEDYLVKRAKEGLEERLAF 306 + + + L + G +R Sbjct: 332 PEGRTMAEELRIQTYRGTVKRYPG 355 >UniRef50_D0WMM2 Putative DNA polymerase III dnae2 n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WMM2_9ACTO Length = 1187 Score = 921 bits (2381), Expect = 0.0, Method: Composition-based stats. Identities = 315/1188 (26%), Positives = 507/1188 (42%), Gaps = 142/1188 (11%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 + L VHS YS +DG + A LV +A L + ALA+TD G+V+ A AG+ Sbjct: 35 PYAELHVHSAYSFLDGASLPADLVARACELELQALAVTDHGGFPGVVQLASAARTAGLPA 94 Query: 65 IVGADFNVQCDLL----GDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 ++G + + + H+ +LA + GY+ L+ + +A + + Sbjct: 95 VIGTELTLLSEDRSAQADPPGEHIVLLARDPEGYRRLSRTVGEAMLASGEKNRARYELED 154 Query: 121 LIELN-------------------EGL---------------------------ILLSGG 134 L + EGL I S G Sbjct: 155 LAAASGGNWMVLSGCRKGGVRRALEGLEGQGAEGSRGGLPLEGAGSRERADCLGIAGSPG 214 Query: 135 RMG-------------DVGRSLLRGNSALVDECVAFYEEHFP-DRYFLELIRTGRPDEES 180 G G S + E V E F +EL +G P + Sbjct: 215 IAGGRRNSGFNPGASAFSGPSPALWDVDAAVEQVRRLESLFGKGNVAVELTNSGAPLDRE 274 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 A VE A G+P +AT +V + D D ++ A TL++ + ++ Sbjct: 275 RCRALVETANRAGVPYLATGNVHYARPRDRDVADVFAATRARTTLEEIDPFLPANGS-HL 333 Query: 241 RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTE-DYLVKRAKEG 299 RS +M L D PEA+A I C + L LP FP + TE +L +E Sbjct: 334 RSGGQMLSLHRDHPEAVAEAARIGAECAFDLALVAPDLPDFPVPEGHTEASWLRCLTRER 393 Query: 300 LEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVG 359 +R P E ++ EL VI +GFPGYFLIV E + + + G+ Sbjct: 394 ALKRYG--------PRSSNPRAWEVIDHELDVIVGLGFPGYFLIVCEIVDFCRSRGIW-C 444 Query: 360 PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVA 419 GRGS A S V +AL IT +D + +LFERFL+P R PD DVD ++R++VI+HV Sbjct: 445 QGRGSSANSAVCFALGITAVDAVRHKMLFERFLSPGRSGPPDIDVDIESDRREEVIQHVY 504 Query: 420 DMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEP 479 + YGR +Q+ + ++ IRD + LG+ G V+ + + A Sbjct: 505 ERYGRKCAAQVANTISYRPRSAIRDAAKALGYEEGQVEAWLRSVEHKVPAKADVGGSAGY 564 Query: 480 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 539 + A+ D+A +++ + R+ G H GG+V+ + D P V Sbjct: 565 EPAGYEADVP--AAVADLASRMQRLPRHLGIHTGGMVLCDRPVIDVCPAGWARMPGRTVL 622 Query: 540 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRR-AKNGEPPLDIAAIPLDDKKSFD 598 Q+DK D AGLVKFD LGL LT + + + A + PL + +P +D + + Sbjct: 623 QWDKDDCAEAGLVKFDLLGLGMLTALRKSYTQLTDAGIAGSDGKPLGLHNLPQEDPRVYA 682 Query: 599 MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658 +LQ ++T VFQ+ESR + RL+P+CF D++ VAL RPGP+Q V ++ R+ GR Sbjct: 683 LLQAADTVGVFQVESRAQMATLPRLRPECFYDIVIEVALIRPGPIQGDAVSPYLARRRGR 742 Query: 659 EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKK-P 717 E ++YP H KP LE T G+ L+QEQ+MQIA ++G+T AD LR+AMG K+ Sbjct: 743 EPVTYP-----HPLTKPALEKTLGVPLFQEQLMQIAIDVAGFTPAQADRLRKAMGAKRSH 797 Query: 718 EEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAH 777 E M++ +S G G+ + +I+D ++ FA +GF +SHS ++A + Y + WLK H Sbjct: 798 ERMSELKSELYSGMASKGVPPRVREEIYDKLDAFAEFGFPESHSFSFAYLVYASAWLKVH 857 Query: 778 YPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGE------- 830 +P F A ++ A LV + R G+ + P + L V G Sbjct: 858 FPEHFYAGILAAQPMGFYSPQSLVADARRHGVHVASPCVVRSLGEASVRKRGAAERDVAK 917 Query: 831 ---------------------------------IVYGIGAIKGVGEGPIEAIIEARNKGG 857 + G+ +++G+G + I++AR G Sbjct: 918 CGGERAEMECDEPECGDGAAASTRLVDPHGDLEVRLGLDSVRGLGAAAVSRILKARQ-GA 976 Query: 858 YFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEA 917 F + D+ R +L R LE L +GA LG R + + AD+ + + Sbjct: 977 PFTDAADMARRA---RLGRGQLEALAAAGALQALGVGRREGIWAAQAL---ADKTVQGKG 1030 Query: 918 IGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYV 977 Q + G + + + EQ + + G+ +P ++ Sbjct: 1031 WYQPTLPG------TESIGTAPALDEMTEQEAAIADISSTGVSAGSYPTQFLRGDLAG-R 1083 Query: 978 GGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDK 1037 G +++ D+ G+ + AG+V + T G + +L+D +G L V+ T D+ Sbjct: 1084 GILKVSDLGEAPVGERVRVAGVVTHRQRPWTATG--VTFISLEDETGILNVVCSTGLWDR 1141 Query: 1038 YQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLA 1085 Y+Q+ + + L+V G V G + A + + + +R Sbjct: 1142 YRQVARRSQGLVVRGMVER--GDGAMNFVADALEPLVLPVQAKSRDFR 1187 >UniRef50_C8NZJ2 DNA polymerase III subunit alpha n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZJ2_ERYRH Length = 1030 Score = 921 bits (2381), Expect = 0.0, Method: Composition-based stats. Identities = 341/1051 (32%), Positives = 550/1051 (52%), Gaps = 54/1051 (5%) Query: 7 VHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIV 66 HL V S YS++ G+ + +KA ++A+TD L G + FY A IKPI Sbjct: 12 THLMVRSHYSLLKGMMPVELICEKAKHNESKSIALTDRHVLFGALDFYDAARKHHIKPIY 71 Query: 67 GADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNE 126 G + + D + VLA N GYQ L L ++ Y + ++ + Sbjct: 72 GMEITILED---ESYYDSLVLARTNEGYQGLIHLSYLLSKQAYISEADVVPFE------S 122 Query: 127 GLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAV 186 LI ++ G + +L N V + ++ F +++ L + Sbjct: 123 ELIFIAYSEQGPFEKGMLSKNLDEVANTMERLKKMFS-YFYIGLSHQESGFFSNVNDQLR 181 Query: 187 ELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEM 246 ++A R + VA V + + D +A AI L+D + SP + S+++ Sbjct: 182 QMAVLREIECVALPKVYYENKDDEEAFRALQAIDKSTYLED--KTLVSSPNRNFISDDDF 239 Query: 247 CELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTED-YLVKRAKEGLEERLA 305 L+ + +L +T IA+ CNV++ + LP+F T + +L + + GL+ RL Sbjct: 240 KVLYTEAELSLTDT--IAEMCNVSIMNLKTELPEFETHQEVSNKVFLEQLSHFGLKRRLN 297 Query: 306 FLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSG 365 P++ Y ERL EL++IN+M F YFLIV + I+++K G+ VGPGRGS Sbjct: 298 NSVPEK---------YRERLNYELKIINEMNFTDYFLIVYDVIRYAKKAGIYVGPGRGSS 348 Query: 366 AGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRD 425 AGSLVAY L I ++DP+E+DLLFERFLNPERVSMPD D+DF +KR VI++V + YG D Sbjct: 349 AGSLVAYCLGIVEIDPIEYDLLFERFLNPERVSMPDIDIDFPDDKRQYVIDYVRNKYGDD 408 Query: 426 AVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIY 485 V+ I+TFGT+ A+ RD RVL P VD++SKLI DP M L + + + Sbjct: 409 YVAHIVTFGTLKARQAFRDTARVLQVPIRKVDQVSKLI--DPMMGLRDNYNKNSRFKSLI 466 Query: 486 EADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSD 545 ++++ +K ++A K+EG+ R+ HA G+V++ + P+ + + Q++ S Sbjct: 467 QSEDLLKKTFELACKIEGMPRHTSTHAAGIVLSKKPLDVVVPVIQ-LDSETKAVQYEMSH 525 Query: 546 VEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSET 605 +E GLVK DFLGLR LTII+ IN+ DI +IPLDD+K+++++ R+ET Sbjct: 526 LESIGLVKIDFLGLRNLTIIDNISRQINES------EAFDIMSIPLDDQKTYELISRAET 579 Query: 606 TAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPD 665 VFQLES GMK L+K+++P F D++ VALFRPGP++ + +++ + E++ Y Sbjct: 580 VGVFQLESDGMKALLKKVKPHKFSDIVDTVALFRPGPME--NIPLYLENRDHPEKVKY-- 635 Query: 666 VQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRS 725 H+ LK + E T GI++YQEQ+MQ+AQ+++G++L AD+LR+AMGKK +E+ ++ Sbjct: 636 ---IHDDLKRITESTNGILIYQEQIMQVAQIMAGFSLARADILRKAMGKKNAKELDGLKT 692 Query: 726 VFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAA 785 F +G G A ++F L+ KFA YGFNKSHS AY L++YQ +LKA+YP F Sbjct: 693 EFIQGCIDKGHKETFAEELFSLIYKFANYGFNKSHSVAYGLIAYQLSYLKANYPHLFYTY 752 Query: 786 VMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGP 845 ++T+ + + K +DEC R + + P ++ + + I IKG+ + Sbjct: 753 LLTSVIGSEVKTRQYIDECRRRKVDLRPVNLEQSRNSYTLEG-YAIRLPFTVIKGISKSI 811 Query: 846 IEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDA 905 I + G + ++ +R + + + E LI +GAFD L R +++ SL +A Sbjct: 812 GTKIQNEVHDNGPYLNYYNAISRLNLVGIKKNQFELLIQAGAFDYLNSDRLSMIASLEEA 871 Query: 906 LKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHP 965 L+ A+ + GQ+ + L EP + + VL+ E LG Y + HP Sbjct: 872 LRYANIIRVEKD-GQSSLNMDLISEP------IFTVVSENRRQVLNDELVVLGFYFSEHP 924 Query: 966 INQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGR 1025 + K+ E + R K +V ++ TK+G+++ L D +G Sbjct: 925 TLRLKKKHE------SDSLIEVKVRDKYFRIIAMVDRIKLHRTKKGDQMAFIQLSDDTGL 978 Query: 1026 LEVMLFTDALDKYQQLLEKDRILIVSGQVSF 1056 ++ ++F DK + LE +++V GQ+ Sbjct: 979 IDGVVFPSVYDKIKVNLEIGALVLVKGQMRE 1009 >UniRef50_C3M9Z5 Error-prone DNA polymerase n=28 Tax=cellular organisms RepID=DNAE2_RHISN Length = 1117 Score = 918 bits (2374), Expect = 0.0, Method: Composition-based stats. Identities = 271/1140 (23%), Positives = 488/1140 (42%), Gaps = 90/1140 (7%) Query: 1 MS-EPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59 MS EP F L +++S ++G A ++ A G+ L + D ++ G+V+ + Sbjct: 1 MSGEPTFHELGARTNFSFLEGAAPAEEMIVFAKKAGLSGLGVADRNSVAGVVRAHAKAKV 60 Query: 60 AGIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRD 119 GA D + N G+ +L L+S R + D Sbjct: 61 EDYPFQPGARLVFA-----DATPDILAYPKNRRGWGHLCRLLSVGNLRAKKGDCTLYLAD 115 Query: 120 WLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEE 179 L E E L+L+ G R +++ + + +R +L L + Sbjct: 116 LL-EWQEDLLLIVMPGEG-------RPQPEILEALLEKLKASAGNRLYLGLAPRYDSFDR 167 Query: 180 SYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQY 239 +A + + ++ATND + D ++ AI + + + +++ Sbjct: 168 HDFAVLATVARSLDVRLLATNDALYHDPHYRPLADVVTAIREHVPIASAGFLLQKNAERH 227 Query: 240 MRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKEG 299 ++ +EM LF D PEA+ N + KR + ++ + P + + L + EG Sbjct: 228 LKGPKEMVRLFRDYPEAIVNANKFFKRLSFSLDELSHQYPDENAEGETPAESLRRLVAEG 287 Query: 300 LEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVG 359 ER P++ ++E EL++I+ + YFL V + +++++ + Sbjct: 288 ALERYPSGVPEK---------VTRQIEYELELIHDKKYEPYFLTVHKLVKFARSVNIL-C 337 Query: 360 PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVA 419 GRGS A S V + L ITD+DP +F LLF+RFL+ +R PD DVDF E+R++VI+++ Sbjct: 338 QGRGSAANSSVCFCLGITDVDPQKFTLLFDRFLSRDRDEPPDIDVDFEHERREEVIQYIY 397 Query: 420 DMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEP 479 YG++ + +++ R+V + G D S L+ G + E + Sbjct: 398 RTYGKEHAGLTAAVISYRSRSAGREVAKAFGLSE---DVQSALVSSVWGWGTSPFTEEQA 454 Query: 480 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 539 + + AD + ++ A L R+ +H GG VI ++ + P+ + Sbjct: 455 KGAGLDMADPLTRRVLAYASLLMNFPRHLSQHVGGFVITRDRLDEVVPIMNTAMPDRYMI 514 Query: 540 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 599 ++DK D++ ++K D L L LT + A + K +DM Sbjct: 515 EWDKDDLDQLKILKVDVLALGMLTCLARAFRFLEVHYGKPKTLAELYED---QQAAVYDM 571 Query: 600 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRK---H 656 + R++T VFQ+ESR ++ RL+P D++ VA+ RPGP+Q MV ++ R+ Sbjct: 572 ICRADTVGVFQIESRAQMSMLPRLRPREMYDLVIEVAIVRPGPIQGNMVHPYLKRREAQR 631 Query: 657 GREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMG-KK 715 E + YP LK VLE T G+ L+QEQ MQIA +G++ AD LRRAM K Sbjct: 632 KGEPVDYPS-----PELKAVLERTLGVPLFQEQAMQIAITAAGFSPSEADRLRRAMATFK 686 Query: 716 KPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 775 + + +G +NG E A + F+ ++ F YGF +SH+A++A + Y + W K Sbjct: 687 RTGTIHTFERKMIDGMVRNGYEREFAERCFNQIKGFGEYGFPESHAASFASLVYASSWFK 746 Query: 776 AHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDD------- 828 A+YP F AA++ + LV + G++ILP D+N + + + Sbjct: 747 AYYPDIFCAALLNSQPMGFYAPAQLVRDAREHGVRILPVDVNHSDWDALLEGEAMFRKEA 806 Query: 829 ---------------GEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKK 873 + G +KG+ + +EA++ R +G +R + DL R Sbjct: 807 IDPRHGEMRDVIRSGKAVRLGFRLVKGLRQPDMEALVARRGEG--YRSVHDLWLR---SG 861 Query: 874 LNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQ 933 L R VLE+L + AF +G R + ++ + + +F Q Sbjct: 862 LTRAVLERLADADAFRSIGLDRRRALWAVKALNEQSAVER-------LPLFDGAGSTDLQ 914 Query: 934 IEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKV 993 +E + + + + L L L HP++ + R +G + +D+ T G+ Sbjct: 915 VEPAV-ALPDMAAGEHVIHDYRYLTLSLKAHPVSFMRGDFAR-MGILSSRDLARTPAGRR 972 Query: 994 ITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQ 1053 +T AGLV+ + + G + T++D +G ++++ KY+ + R++ V G+ Sbjct: 973 VTVAGLVLVRQRPGSANG--VIFMTIEDETGVANIIVWEKTFQKYRPQVMGSRLVKVRGR 1030 Query: 1054 VSFDDFSGGLKMTAREVMDIDEAREKYARGLA-----------ISLTDRQIDDQLLNRLR 1102 + + SG + + A + D+ + T D + L +LR Sbjct: 1031 LQSE--SGVIHVVAEYMEDMTPMLGLLRNEARRFGANDRADEALRPTADARDKKALRQLR 1088 >UniRef50_C0W389 DNA-directed DNA polymerase n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W389_9ACTO Length = 1110 Score = 918 bits (2373), Expect = 0.0, Method: Composition-based stats. Identities = 314/1148 (27%), Positives = 498/1148 (43%), Gaps = 103/1148 (8%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M E + L HS YS +DG + L AA LG+ ALA+TD + G+V+ AG Sbjct: 1 MFESSYAELHSHSAYSFLDGANEPEDLAAAAAELGLTALALTDHDGMPGIVRHAQAGRAL 60 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 G+ + G + + + HL VLA + GY++L IS+ + P + Sbjct: 61 GLPTVHGTELTM------SDGAHLPVLARSPEGYRHLVSAISQHNLQAGRRQEPAHRLED 114 Query: 121 LIELNEG---------LILLSGGRMGDVGRSL------LRGNSALVDECVAFYEEHFP-D 164 L + G ++L+G G + R+L ++ D C+ E D Sbjct: 115 LAQALRGGTGMAAPSSCLVLTGTARGPLRRALGDPARPHTWDTQAADICLGRMVELLGAD 174 Query: 165 RYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFT 224 +E+ G P + + LA + LPV+AT VR +D ++ A G Sbjct: 175 GVAVEITLNGGPTDAALTRMLTRLAASHRLPVLATGAVRCARPADSRLADVLTATRLGTD 234 Query: 225 LDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTG 284 L+ R + +++RS EM L P+A+ T E+A + L LP Sbjct: 235 LEGA-RGHLPAIGRWLRSGAEMARLHRRAPQAVGVTAELAADLAFDLALVAPDLPAAQVP 293 Query: 285 DMST-EDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLI 343 T +L + ++G R ++ P + L+ EL+VI +GFPGYFLI Sbjct: 294 PGHTPASWLRELTRQGALLRYGT--------REQDPHAWQVLDHELEVIESLGFPGYFLI 345 Query: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 V +++ +++G+ GRGS A S V YAL IT +D + +LFERFL+P R PD D Sbjct: 346 VRSIVEFCEESGIL-CQGRGSAANSAVCYALGITAVDAVRHKMLFERFLSPGRAGYPDID 404 Query: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 +D +R++VI+HV YGR +Q+ + ++ +RD R LG+P G D ++ I Sbjct: 405 LDIEACRREEVIQHVYTRYGRHRAAQVANVISYRPRSAVRDAARALGYPAGLQDAWARSI 464 Query: 464 PPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKIT 523 + D + ++D+A +L + R+ G H+GG+V+A +T Sbjct: 465 EHGWSR----------EQDGQAREDAVPEQVLDVADRLLRLPRHLGVHSGGMVLAAQPVT 514 Query: 524 DFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKR-------- 575 + P+ V Q+DK D AGLVKFD LGL LT + A + R Sbjct: 515 EVCPVRWAAMEGRSVLQWDKDDCAAAGLVKFDLLGLGMLTALRLAFTSLGDRGEKVPDLT 574 Query: 576 --------RAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDC 627 R P + +P +D + +LQ ++T VFQ+ESR + RL+P Sbjct: 575 SRQGDGILRPAQVGRPWGLHTLPEEDPAVYRLLQAADTIGVFQVESRAQMATLPRLRPRV 634 Query: 628 FEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQ 687 F D++ VAL RPGP+Q V+ +I R+ GREE Y H+ L+P LE T G+ L+Q Sbjct: 635 FYDIVVEVALIRPGPIQGDAVNPYIRRRLGREEPDY-----LHDLLRPALEKTLGVPLFQ 689 Query: 688 EQVMQIAQVLSGYTLGGADMLRRAMGKKKP-EEMAKQRSVFAEGAEKNGINAELAMKIFD 746 EQ+MQIA +G++ AD LR+AMG K+ E M EG ++ GI+ A +FD Sbjct: 690 EQLMQIAVDAAGFSPVEADALRQAMGAKRSVERMEALHLRLVEGMKERGISQGTAELVFD 749 Query: 747 LVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWR 806 + FA +GF +SH+ ++A + Y + WLK P +F A V+ A LV + R Sbjct: 750 KLRAFADFGFPESHAFSFAYLVYASAWLKVRRPEDFYAGVLAAQPMGFWSPQTLVADARR 809 Query: 807 MGLKILPPDINSGLYHFHVN-----------------------------DDGEIVYGIGA 837 G+++L D++ V D + G+ Sbjct: 810 HGVQVLAADVSHSEVQASVETVRPGAPSQACVGGAGEEASTALTHLDTHRDLAVRLGLAP 869 Query: 838 IKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAA 897 IKG+G E I+ R G +R++ DL R +L R+ LE L +GA LG R Sbjct: 870 IKGIGRELAERIVTERQSHGAYRDVADLARRV---RLGRKHLETLAAAGALASLGVSRRQ 926 Query: 898 LMNSLGDAL-KAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERET 956 + S G + H G + + Q + Sbjct: 927 ALWSAGVLADEHGRPHLGHRTGGDRTPWCQPPLPGTAVGSRAPDLPEMSAQERHVADLRL 986 Query: 957 LGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGI 1016 G+ HP+ + G V + + G + AG+V + T G Sbjct: 987 TGVSTETHPLAFLRTALAED-GVVEVVRVGQQGNGAQVRVAGVVTHRQRPYTAAGT--VF 1043 Query: 1017 CTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEA 1076 ++D +G L V+ + +Y+ + + ++V G V D G + A+ + ++ Sbjct: 1044 LNIEDETGLLNVICSSGMWKRYRHVGRRATAVVVWGVVESAD--GVTALRAQSLQGLEGV 1101 Query: 1077 REKYARGL 1084 +R Sbjct: 1102 VSTGSRDW 1109 >UniRef50_B2UJ29 Error-prone DNA polymerase n=70 Tax=Betaproteobacteria RepID=DNAE2_RALPJ Length = 1079 Score = 916 bits (2369), Expect = 0.0, Method: Composition-based stats. Identities = 275/1104 (24%), Positives = 478/1104 (43%), Gaps = 64/1104 (5%) Query: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 P + L S+++ + G + + LV++A G ALA+TD ++ G + A +K Sbjct: 11 PDYAELHCISNFTFLTGASHPSELVERAKLYGYQALALTDECSVAGTARALVASKEHELK 70 Query: 64 PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIE 123 I+G+ F V+ G+ L +LA N GY NL+ +I+ A + D L Sbjct: 71 LIIGSRFTVRNAD-GEPWLRLVLLAQNIEGYGNLSEIITHARLAAPKGEY-RLLADDLAS 128 Query: 124 LNEGLILLSG---GRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 180 L L G + + + + + F DR + L R ++ Sbjct: 129 PQGELAHLRGAPDCLAILLPDY--DPDPQQLLAQAWWCQRVFGDRLSIALELPLRHADDR 186 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 + + ++E +P+VAT V+ H++ AI L + S +Q M Sbjct: 187 HRGTVLAVSEQIDVPMVATGGVQMHTRQRKPLHDVLTAIRLSKPLSECGLELAPSAEQAM 246 Query: 241 RSEEEMCELFADI--PEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKRAK 297 R+ ++ L+ + L TVE+A CN ++ EY P + + +YL Sbjct: 247 RTRMQLAFLYQGEGGEKILRRTVELAALCNFSLDEIEYEYPSEVVPEGMTPAEYLRAETF 306 Query: 298 EGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVP 357 G R + ++E EL +I ++G+ +FL V + ++++++ G+ Sbjct: 307 AGAARRYPNGV---------SEKVHAQIEEELGLIAELGYEPFFLTVYDVVKFARNEGIL 357 Query: 358 VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEH 417 GRGS A S V Y L IT+++P + LF RFL+ R PD DVDF ++R++VI++ Sbjct: 358 -CQGRGSAANSAVCYCLGITEVNPDSGNTLFARFLSRARNEPPDIDVDFEHQRREEVIQY 416 Query: 418 VADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEA 477 + YG + T ++ +RDVGR LG G V++++K K F Sbjct: 417 IYKKYGVTRTALAAALITYRTRSALRDVGRALGIDLGIVEQVAK---GQAWWDSRKEFAQ 473 Query: 478 EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHP 537 + V + +L G R+ +H GG VIA K++ P+ Sbjct: 474 RAGQQGLDPESPLVLRWAQLVDQLRGFPRHLSQHVGGFVIAQGKLSRLVPIENAAMENRR 533 Query: 538 VTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMI----NKRRAKNGEPPLDIAAIPLDD 593 V Q+DK D+E L+K D L L LT I L+M+ +R L + +P DD Sbjct: 534 VIQWDKDDLESLRLLKVDVLALGMLTAIRRTLDMVDALPGRREHYGATAKLAMQNLPDDD 593 Query: 594 KKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFID 653 +++DM+ R+ET VFQ+ESR + ++ RL+P + D++ VA+ RPGP+Q GMV ++ Sbjct: 594 TETYDMICRAETIGVFQIESRAQQSMLPRLRPREYYDLVIQVAIVRPGPIQGGMVHPYLQ 653 Query: 654 RKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMG 713 R+ + + V + +K VLE T G+ ++QEQVM+IA +T AD LRR M Sbjct: 654 RREAKRNGNTDCVTYPGPEVKAVLERTLGVPIFQEQVMEIAMKAGDFTADDADRLRRDMA 713 Query: 714 K-KKPEEMAKQRSVFAEGA-EKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQT 771 K+ + + + K + + +E FA YGF +SH+A +A ++Y + Sbjct: 714 AWKRKGNLTQHQERLVHAMVVKRRYDPAFVEALCKQMEGFAEYGFPESHAAGFAKLAYVS 773 Query: 772 LWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVND---- 827 +LK H PA F AA++ + LV E R +++LP D+ + ++ ++ Sbjct: 774 SFLKCHEPAAFFAALLNSQPMGFYSPSQLVQEARRSHVRVLPADVTASVWDSTLHPRADG 833 Query: 828 --------DGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVL 879 +I G+ I+G+ P IEA F + DL R L+R L Sbjct: 834 ETGEDGLVQPDIRLGLNRIRGMR-KPAAERIEAARAQAPFTSVEDLAHRA---ALDRHDL 889 Query: 880 EKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYA 939 L + A L HR + Q + ++ Sbjct: 890 NVLAAANALKSLAGHRRQALWQ--------------TLALQEPGHDHALLRQARPVEAPL 935 Query: 940 SCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGL 999 P + + +LGL L HP+ +ER + + G++ A G+ Sbjct: 936 ELPAPPIGEEVMADYGSLGLSLQSHPVELLRARLER-MRFATAATLAGYRNGQLARACGI 994 Query: 1000 VVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDF 1059 V + T G +++D +G + V+L+ +++ ++ + ++L V G+ + Sbjct: 995 VTVRQRPGTANGT--IFVSIEDETGAINVILWPHLIERQRREVLNAQLLGVYGKWQCE-- 1050 Query: 1060 SGGLKMTAREVMDIDEAREKYARG 1083 + A+ ++D+ + A Sbjct: 1051 RETRHLVAQHLVDLTPLLGRLATS 1074 >UniRef50_Q9RX08 DNA polymerase III subunit alpha n=2 Tax=Deinococcus RepID=DPO3A_DEIRA Length = 1335 Score = 916 bits (2368), Expect = 0.0, Method: Composition-based stats. Identities = 347/852 (40%), Positives = 512/852 (60%), Gaps = 22/852 (2%) Query: 320 EYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDL 379 + R E EL VIN MGFP YFLIV ++I W+KD+ + VGPGRGSGAGSLVAYA++IT+L Sbjct: 469 KLLRRAEYELSVINNMGFPDYFLIVADYINWAKDHDISVGPGRGSGAGSLVAYAIRITNL 528 Query: 380 DPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAK 439 DPLEF+LLFERFLNP+R+SMPDFD+DF +R +VI +V + YG D V+QI TFGTMA+K Sbjct: 529 DPLEFELLFERFLNPDRISMPDFDIDFNDARRTEVIGYVQEKYGTDKVAQIATFGTMASK 588 Query: 440 AVIRDVGRVLGHPYGFVDRISKLIPPDPGM--TLAKAFEAEPQLPEIYEADEEVKALIDM 497 A ++DV RV+G Y VD++SKLIP G +L +A EA P + ++ D ++ + Sbjct: 589 ACLKDVARVMGLEYAKVDKVSKLIPIKFGKSYSLEQAREAVPDIQQMLAEDAQLLEAYEF 648 Query: 498 ARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFL 557 A+KLEG+TR+A HA GVVI ++T+ P+ D G+ V Q+D VE GL+K DFL Sbjct: 649 AQKLEGLTRHASVHAAGVVIGREELTNLVPVMRDTSGEGQVCQYDMKSVEDIGLIKMDFL 708 Query: 558 GLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMK 617 GLRTL+ ++ A ++ + E D IP DD+K+++++ R +T VFQLE G+ Sbjct: 709 GLRTLSFLDEAKRILRESGTDFEEKYGDFDHIPFDDEKTYELMSRGDTKGVFQLEGAGIA 768 Query: 618 DLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQH--ESLKP 675 D +RL+P D+IAL AL+RPGP++ + ++ R HG EE+ Y + + + L+ Sbjct: 769 DASRRLKPRRLADIIALSALYRPGPME--NIPTYVRRHHGIEEVDYDKDGFPNSKQWLEK 826 Query: 676 VLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNG 735 +L+ TYGI +YQEQ+MQIA ++GY+LGGAD+LRRAMGKK EEM +QR +F GA++ G Sbjct: 827 ILQETYGIPVYQEQIMQIASEVAGYSLGGADLLRRAMGKKDAEEMKRQRQLFVVGAKEKG 886 Query: 736 INAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTE 795 + + K+FD+++ FA YGFNKSHSAAY +++YQT WLKA+YP +FMAA++T + +++ Sbjct: 887 VPEDEGNKLFDMLDAFANYGFNKSHSAAYGVITYQTAWLKANYPVQFMAALLTVERRDSD 946 Query: 796 KVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNK 855 KV V + +M L +LPPDIN F V + EI++G+ AIKG+GE + I+E R K Sbjct: 947 KVAEYVSDARKMDLHVLPPDINRSSSDFAVAGE-EILFGLYAIKGLGESAVLRILEEREK 1005 Query: 856 GGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKA 915 G F+ L D C+R K NR+ LE LI SGAFD G R L+ SL DAL+ A A+ Sbjct: 1006 AGAFKSLADFCSRLGNKVCNRKALESLIKSGAFDAFGE-RHQLIESLEDALEDAAGTAEI 1064 Query: 916 EAIGQADMFGVLA-EEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIE 974 A Q+ M + EE ++ +S P+ + L E+E LGLY++GHP+ Q+ E Sbjct: 1065 NARAQSGMSMMFGMEEVKKERPLRSSIAPYSDLERLAIEKEALGLYISGHPLEQHEGLRE 1124 Query: 975 RYVGGVRLKD----MHPTERGKV--ITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEV 1028 V D + GK AG++ TK G + L D SG++E+ Sbjct: 1125 AASCRVSDLDAWFALQNVAPGKRQKAVLAGMIEGVVKKPTKSGGMMARFILADESGQMEL 1184 Query: 1029 MLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISL 1088 + F+ A D+ + L D +V ++ +D GGL+ A E++ I++ + + + +++ Sbjct: 1185 VAFSRAYDRIEPKLVNDTPALVIVELEAED--GGLRAIAEEIVSIEQL-SEVPKVMYVTI 1241 Query: 1089 TDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRG 1148 L + L+ + +G++P +L + + + S + L Sbjct: 1242 DLETASPDALGDFQSVLDEY-AGSMPTYLRLETPEQFVVYQLDHGMG---SPEAIRALNQ 1297 Query: 1149 LIGSEQVELEFD 1160 L +D Sbjct: 1298 TFAWADAHLAYD 1309 Score = 319 bits (817), Expect = 5e-85, Method: Composition-based stats. Identities = 110/348 (31%), Positives = 162/348 (46%), Gaps = 28/348 (8%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAAL----GMPALAITDFTNLCGLVKFYGAGHGA 60 +F HL H+ YS++DG AK L+K A + PALA+TD N+ G V FY G Sbjct: 23 KFAHLHQHTQYSLLDGAAKLKDLLKWAKEVTPEGQTPALAMTDHGNMHGAVHFYNYAMGM 82 Query: 61 GIKPIVGADFNVQC-----------DLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109 +KPI+G + V + HLT+LA + GYQNL L S+ Y GY Sbjct: 83 EVKPIIGYEAYVVPGFGTRRDRSRAQDGEKGIFHLTLLARDFEGYQNLCRLSSRGYTEGY 142 Query: 110 GAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLE 169 P ID + L E ++G+I SG +V + L++G + +Y E F D YF+E Sbjct: 143 -YYKPRIDHELLQEHHKGIIAFSGCLGSEVQQLLMQGREDDARARLLWYRELFGDNYFIE 201 Query: 170 LIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPK 229 + G P+++ A+ G+ +VATND ++ SD AHE +AI TL D Sbjct: 202 IQDHGLPEQKKNNPILKAWAQELGIGMVATNDGHYVKKSDATAHETLLAIQTKATLADEN 261 Query: 230 RPRNYSPQQYMRSEEEMCELFA---DIPEALANTVEIAKRCNVTVRLGE---YFLPQFPT 283 R + + Y+++ EEM E NT IA+ CNV + +G+ Y +PQ P Sbjct: 262 RFKFPCDEFYVKNLEEMQRALPVSEWGEEPFDNTAHIAELCNVELPVGKKRQYQMPQLPI 321 Query: 284 GDM-STEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQ 330 + S + L + G +R + R +Y R EL Sbjct: 322 PEGRSMAEELRVQTYAGAVKRYPAHLTEGLLR-----DYAARSLAELG 364 >UniRef50_Q1AUQ9 DNA polymerase III, alpha subunit n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AUQ9_RUBXD Length = 1084 Score = 915 bits (2364), Expect = 0.0, Method: Composition-based stats. Identities = 338/1105 (30%), Positives = 513/1105 (46%), Gaps = 59/1105 (5%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS F HL S +S G+A L AA +GM ALA+TD L G+ + A GA Sbjct: 1 MSG--FAHLHARSGFSYGFGVATPEELAGAAARMGMWALALTDRDGLYGVPRLLAACEGA 58 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 G+ PIVGA+ +E H+ +LAA GY++L+ LI+ P+ Sbjct: 59 GVSPIVGAEV------GMEEGGHVVLLAAGMEGYRSLSRLITAYRCSSEDRRRPVCPLPV 112 Query: 121 LIELNEGLILLSGG-RMGDVGRSLLRGNSALVDECVAFYEEHFPD-RYFLELIRTGRPDE 178 L+E EGL+ L+G G + R +L G + V E F F EL Sbjct: 113 LLEHAEGLVCLTGAVPFGLLPRLVLSGREKQARKVVGLLREAFGAAGVFAELSDDRTAGS 172 Query: 179 ESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQ 238 + A GLPVVATN+ ++ D HE+ VA + L P + Q Sbjct: 173 RRRMARVAAFARECGLPVVATNEAAYLRPEDHRLHEVLVAASNLTRL--PGPGYRPTDQL 230 Query: 239 YMRSEEEMCELFADIPEALANTVEIAKRCNVTVRL-GEYFLPQFPTGDMSTED-YLVKRA 296 +++ M LF PEALAN +A+RC +VRL G+ +P + T + L + Sbjct: 231 WLKPPGAMRRLFEGYPEALANAALVAERCAGSVRLSGKVHMPAAVLPEGETAEGRLARLV 290 Query: 297 KEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGV 356 EG R RL EL I +G YFLI E + +++ GV Sbjct: 291 GEGARRRYGRP----------GDRVWRRLRRELACIGALGHAAYFLIAHEAKEIARERGV 340 Query: 357 PVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIE 416 PV GRGS A S+VAY L +T +PL LLFERFL+ R PD D+D E RD V Sbjct: 341 PV-SGRGSAANSMVAYCLGLTSPEPLGNRLLFERFLHEGRKDPPDIDLDLDSELRDGVRN 399 Query: 417 HVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPD--------PG 468 + YGR + T TM+ + +R R LGHP +DR+S+ +P G Sbjct: 400 ELMGRYGRHGAAVAATAETMSLRGAVRVAARALGHPPEEIDRLSRHVPARFRDRDRVYAG 459 Query: 469 MT-LAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVI--APTKITDF 525 + +A + L++++ +L G AG H GGVV A +++ Sbjct: 460 IDGWEEALREPAMRGHPLRDRRRHRLLLELSARLCGRLWQAGTHNGGVVFGTAERHLSEL 519 Query: 526 APLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLD 585 PL + Q+DK D+EY GL K D LGL+ T + A E+ + R + +D Sbjct: 520 VPLEPSGKEGLLRCQYDKDDLEYVGLPKLDLLGLKMHTALRKAGELASARLGEE----VD 575 Query: 586 IAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQS 645 A+P D ++ +++ T +FQLES G L RL+P F D++A V+LFRPGP++ Sbjct: 576 PYALPPGDGATYALIRTGRTAGIFQLESPGQMSLSTRLKPRRFPDLVAQVSLFRPGPVRG 635 Query: 646 GMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGA 705 +V +++R++GRE + P E L+PVL PTYG++++QEQV+++ ++G++L Sbjct: 636 DLVTPYVNRRNGREPYTVPL-----EELEPVLRPTYGVMVFQEQVLEVCHRVAGFSLAEG 690 Query: 706 DMLRRAM-GKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764 D++RRAM + P M + R F A G+ E A ++F+ +E F+ YGF+ +H A++ Sbjct: 691 DLVRRAMTRARGPGAMRELRERFVGSAVGRGVPREKAEEVFEWMEGFSVYGFSAAHGASF 750 Query: 765 ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824 A ++Y + +++ HYPAEF ++ + L++E R GL +LPPDI+ F Sbjct: 751 AEIAYASAYMRVHYPAEFFCGLLNSQPMGFYSPRVLLNEARRAGLSVLPPDIHLSGEGFT 810 Query: 825 VNDDG-EIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLI 883 V DG + G+ KG+ E I +I+ R + F DL RT + R L +I Sbjct: 811 VEGDGTALRVGLSYCKGLSERAIASIVSERERE-PFASAADLYRRT---AVERDSLRDMI 866 Query: 884 MSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQP 943 +G D LG R L+ G + + E I A AE + P Sbjct: 867 RAGFLDALG-DRGRLLGEAGRLPEK-RRRGDQEEIPPAHPASWWAERETRGGGDAPVGLP 924 Query: 944 WPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAA 1003 E E E LGL + HP+ Y + R +G V ++ G+ + AGL+ Sbjct: 925 LAEDARERMEWEVLGLNVRRHPLEPYRAAL-RELGVVPSEEAKGLAHGRRVRVAGLIECL 983 Query: 1004 RVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGL 1063 + T+ G+ + ++D G L+ +F +Y LL ++ G+V G Sbjct: 984 QHPPTRSGHPVWFLLIEDERGLLQATVFRRVYGRYGDLLHHGGAFLLEGRVEQSPRRG-F 1042 Query: 1064 KMTAREVMD----IDEAREKYARGL 1084 V D + + R R + Sbjct: 1043 AFLVERVEDLHAKLSDVRVPAPRVV 1067 >UniRef50_B0T091 DNA polymerase III, alpha subunit n=1 Tax=Caulobacter sp. K31 RepID=B0T091_CAUSK Length = 1117 Score = 913 bits (2360), Expect = 0.0, Method: Composition-based stats. Identities = 259/1144 (22%), Positives = 475/1144 (41%), Gaps = 117/1144 (10%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M + L+ +++S + G + L+ ALG+ A+ + D +L G+V+ + A Sbjct: 1 MKTHAYAELQATTNFSFLRGASHAQELMLTGQALGLTAVGVADRNSLAGVVRAWTAAKDL 60 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 I+ + G D L ++ + LT L++ +R + +D+ Sbjct: 61 KIRALTGCRL-----DFMDGAPSLLCYPSDREAFGRLTRLLTVGQRRAGKGECHLSWKDF 115 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 180 L E EG + L L A + R +L R + Sbjct: 116 L-EHAEGQLALIVP-----PARLDEAFEADLARIAGELR----GRVWLAASRAYAAQDLK 165 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 L +LA P+VATNDV + ++ I +G T+ + ++++ Sbjct: 166 RLSRLADLAREARAPMVATNDVLYHGPERRPLQDVMTCIREGCTITQAGFRLEANAERHI 225 Query: 241 RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTE-DYLVKRAKEG 299 ++ EM LF P+A+ T+EI +R + + P P T +L +G Sbjct: 226 KTPAEMARLFERWPQAVERTIEIVERIGFDLGDLKEQYPDEPVPPGKTAMQHLTDLTWQG 285 Query: 300 LEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVG 359 R P+ ++L EL++I +M +P YF+ V + + +++ G+ Sbjct: 286 AAWRYPNGV---------SPKVADQLREELRLIAKMDYPNYFITVHDIVHKAREMGIL-C 335 Query: 360 PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVA 419 GRGS A S V + L +T +DP E LLF RF++ R PD DVDF E+R++V+++V Sbjct: 336 QGRGSAANSSVCFCLGVTAIDPTEHRLLFTRFISENRGEPPDIDVDFEHERREEVMQYVY 395 Query: 420 DMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEP 479 YGR+ + T ++ IRDVG+ LG ++ + G L Sbjct: 396 KRYGREYAAICCTVIHYRPRSAIRDVGKALGLTEDITAILANTVWGSWGDGLPD---EHI 452 Query: 480 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 539 + + + ++ I +A +L R+ +H GG V+ ++ + P+ Sbjct: 453 KQTGLDPNNPQIARAIALATELLQHPRHLSQHVGGFVLTKRRLDETVPIGNAAMKDRTFI 512 Query: 540 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 599 ++DK D++ L+K D L L LT I A M+ +P D+A +P++ K +DM Sbjct: 513 EWDKDDIDSLKLMKVDILALGMLTAIQRAFGMLRADHG---QPITDLADVPVEVKGVYDM 569 Query: 600 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 659 L +++ VFQ+ESR ++ RL+P+ F D++ VA+ RPGP+Q MV ++ R+ G E Sbjct: 570 LSVADSVGVFQVESRAQMSMLPRLKPNKFYDLVIEVAIVRPGPIQGDMVHPYLRRRQGLE 629 Query: 660 EISYPDVQWQH---ESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMG-KK 715 + +P +H + L+ +L T+G+ L+QEQ M +A + +T AD LR+AM K Sbjct: 630 KAEWPAPSPEHGHKDELREILGNTFGVPLFQEQAMSLAIEAAKFTPDEADGLRKAMATFK 689 Query: 716 KPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 775 + + R F EG + G + A + F +E F YGF +SH+A++A + Y + W+K Sbjct: 690 NLGDPGEYRDKFVEGMVRRGYERDFATRCFKQIEGFGSYGFPESHAASFAKLVYISAWIK 749 Query: 776 AHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVND-------- 827 +P F AA++ + + LV + G+++ PD+ + + Sbjct: 750 WAWPDVFCAALINSQPMGFYQPAQLVRDAREHGVEVRAPDVLMSDWDCTLEGVSIAQTST 809 Query: 828 --------------------------------------------DGEIVYGIGAIK---- 839 + + A++ Sbjct: 810 VIPDEAQRRSGTDPERRVSGGPGSSRSALVRDDRAFQPASDKLFNPDTRPFWKAVRLGLR 869 Query: 840 ---GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRA 896 G+ E + I E R +G R D +++R LE L + AF G R Sbjct: 870 QIKGLKEDDAKLIEEVRAEGA--RTPADFAR----AGVSQRGLELLAEADAFASAGLTRR 923 Query: 897 ALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERET 956 + ++ A ++A + +F + + + + T Sbjct: 924 DALWAVKGLKGEAKVDSQAPLLAGLPLFD-----------TAVALPTMALPQQVAEDYRT 972 Query: 957 LGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGI 1016 L L HP+ + ++ + + + G+ ++ GLV+ + T +G + Sbjct: 973 TSLSLKAHPLRFFRPMLD-QLNVTPAERLKGVRNGRKVSVGGLVLIRQRPGTAKG--VVF 1029 Query: 1017 CTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEA 1076 TL+D +G +++ D D +++ + LIV G++ + G + + A D+ Sbjct: 1030 LTLEDETGVANAVVWKDCFDAHRRTVMSASFLIVHGKLQASE--GVIHVVAERFTDLSAE 1087 Query: 1077 REKY 1080 + Sbjct: 1088 LARL 1091 >UniRef50_A9FIY0 DNA polymerase III, alpha subunit n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FIY0_SORC5 Length = 1108 Score = 913 bits (2359), Expect = 0.0, Method: Composition-based stats. Identities = 298/1142 (26%), Positives = 489/1142 (42%), Gaps = 122/1142 (10%) Query: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61 + FV L S +S ++G + LV +A LG+ LA+ D + G V+ + A Sbjct: 5 ASVPFVELCGRSCFSFLEGASHPEELVHRAKELGLEGLALCDRDGIYGSVRAHTAAKKVE 64 Query: 62 IKPIVGADFNVQCDLL-----GDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPII 116 + IVGA+ + + + +L ++ GY NL L++ A+ I Sbjct: 65 QRVIVGAELTLGAPRGGAERAPEVRPSVVLLVEDSEGYANLCRLLTIAHAECEKGMASIS 124 Query: 117 DRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRP 176 GL + + + + + G + + F +R + + Sbjct: 125 AEAIAAAQR-GLSAIVP--LDPLVPAGVSG------ALLGTLRDAFGERALVATWKHLDR 175 Query: 177 DEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSP 236 + + AA+ G VVAT + S ++ I TLD + Sbjct: 176 RDGERVAAALAAERRHGPCVVATARPLYHHPSRKPLADVLACIRTKTTLDQAGTRIAPNA 235 Query: 237 QQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQ--FPTGDMSTEDYLVK 294 + Y+RS +M LF D P +A TVE+A RC ++ Y P +++ L + Sbjct: 236 EAYVRSGAQMAALFRDHPAWVARTVEVASRCRFSLSELRYSFPSDALCMPGETSDQALRR 295 Query: 295 RAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDN 354 +EG +R P P ++E EL +I ++G YFL V + ++ ++ Sbjct: 296 LTEEGCRDRYPEGAP---------PPVRAQIEKELALIAKLGVAPYFLSVQQVVKIARAR 346 Query: 355 GVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQV 414 + GRGS A S V + L +T +DP LLFERFL+ ER PD DVDF E+R++V Sbjct: 347 QIL-CQGRGSAANSAVCFVLGVTAVDPARSSLLFERFLSEERHEPPDIDVDFEHERREEV 405 Query: 415 IEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKA 474 I+ + +MYGRD + + K+ +R+VG+ G VDR+S L+ A Sbjct: 406 IQAIYEMYGRDRAAMVSEVIAYRGKSALREVGKAFGFSADQVDRLSGLVHHHE----ADI 461 Query: 475 FEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEG 534 E + D V+ + MA LEG R+ H GG V++ + AP+ Sbjct: 462 TEQRVSEAGLDPDDVRVRQAVMMASALEGFPRHLSIHVGGFVLSSEPLHKVAPVEPARME 521 Query: 535 KHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMI---------------------- 572 V +DK D++ G K D L L LT I AL +I Sbjct: 522 GRTVIPWDKDDLDDLGFFKIDVLALGMLTAIRKALGLIHSDRYAGLAGSSVHTARDPAFA 581 Query: 573 ------------------------------NKRRAKNGEPPLDIAAIPLDDKKSFDMLQR 602 + R +P +A IP +D ++ + R Sbjct: 582 GPSVHTARDPAFAGPSVHTARDPAPAGVSFHAGRGAAFDPIAALAQIPPEDPAVYEAIGR 641 Query: 603 SETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEIS 662 ++T VFQ+ESR ++ RL+P+ F D++ VA+ RPGP+Q GMV ++ R+ G+E Sbjct: 642 ADTVGVFQIESRAQMAMLPRLKPNKFYDLVIEVAIVRPGPIQGGMVHPYLRRRTGQEPPV 701 Query: 663 YPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK-KKPEEMA 721 P H L P+LE T G+ L+QEQVMQIA V +GYT G AD LRR M KK + Sbjct: 702 SP-----HPCLDPILERTLGVPLFQEQVMQIAMVGAGYTPGEADQLRRDMAAWKKHGRLE 756 Query: 722 KQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAE 781 + R +G + GI+A+ ++ ++ F YGF +SH+A++AL+ Y + WLK H+ A Sbjct: 757 RHRGRLIQGFAEQGISAKFGEMLYQQIQGFGEYGFPESHAASFALLVYASAWLKVHHQAA 816 Query: 782 FMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVND------DGEIVYGI 835 F A++ A LV + R G+++ P + + + + G+ Sbjct: 817 FTCALLNAQPMGFYSPSALVQDAQRHGVEVRPVCVVQSAWDATLEPSAEPSAGPALRLGM 876 Query: 836 GAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHR 895 +KG+GE + AI+ AR + F L DL RT+ K + +E L +GA L P R Sbjct: 877 RLVKGLGEAAVAAIVAAREEA-PFASLPDLVRRTELK---KNEVEALAEAGALAALVPAR 932 Query: 896 AALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERE 955 + +A L E + P L + Sbjct: 933 REALW-----------------RARAPRVEGLFEGVPIEQDRDVGLPPLRPLEQLALDYG 975 Query: 956 TLGLYLTGHPINQYLKEIERYVG---GVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012 +GL L HP+ + ++R G +++ G+ + AG+VV + T G Sbjct: 976 RVGLSLHDHPMRHVRRALKRRRGAGRVRTAEEIKAARDGESVRVAGMVVGRQRPATASG- 1034 Query: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072 + TL+D +G + V++ +Y+ + +L+V+G++ + + ARE+ Sbjct: 1035 -VTFMTLEDETGVVNVIVQRQVFAEYEHVARNAALLLVAGRIERQ--GEVVHVLARELDR 1091 Query: 1073 ID 1074 ++ Sbjct: 1092 LE 1093 >UniRef50_C5BVF1 DNA polymerase III, alpha subunit n=3 Tax=Actinomycetales RepID=C5BVF1_BEUC1 Length = 1194 Score = 912 bits (2358), Expect = 0.0, Method: Composition-based stats. Identities = 309/1227 (25%), Positives = 496/1227 (40%), Gaps = 175/1227 (14%) Query: 1 MSE---PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAG 57 MS R+ L HS +S +DG ++ LV +AA L + A+AITD L G+V+F A Sbjct: 1 MSTTDGARYAELHAHSAFSFLDGASQPEALVAEAARLELDAVAITDHDGLYGVVRFAEAA 60 Query: 58 HGAGIKPIVGADFNVQCD-----LLGDELTHLTVLAANNTGYQNLTLLISKAYQ------ 106 G++ + GA+ ++ + + THL VLA GY L+ I+ A+ Sbjct: 61 RALGMRSVFGAELSLDQRTPATGVPDPDATHLVVLARGPAGYHRLSRAIATAHLATGKKG 120 Query: 107 -RGYGAAGPIIDRDWLIELNEG-LILLSGGRMGDV---------------------GRSL 143 R YG A + + L E G ++L+G R G V + Sbjct: 121 ERDYGHAVGLDPLEVLAEQAAGDWLVLTGCRKGAVRRALDGGADGADGAGGAGGAGSIAG 180 Query: 144 LRGNSALVDECVAFYEEHFP-DRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDV 202 + F D +EL G P + + +LA GLPVVAT V Sbjct: 181 AEHGERAAARELDRLVALFGRDNVAVELTDLGAPADSARCDTLADLAARAGLPVVATGGV 240 Query: 203 RFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVE 262 + ++ A+ +L++ +P ++RS +EM A P+A+ E Sbjct: 241 HCAHPREGRLVDVLAAVRARRSLEEIDGWLPPAP-AHLRSADEMLARHARHPQAVRTAAE 299 Query: 263 IAKRCNVTVRLGEYFLPQFPTGDMSTE-DYLVKRAKEGLEERLAFLFPDEEERLKRRPEY 321 + C + L LP P E +L + R RP+ Sbjct: 300 LGLECAFDLTLVAPRLPPHPVPPGYDEASWLRELTMRCARTRYGT--------RDERPDA 351 Query: 322 DERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDP 381 ++ EL +I ++GFPGYFLIV E + + G+ GRGS A S V YAL IT +D Sbjct: 352 YAIIDRELDIIVRLGFPGYFLIVHEIVDFCVQQGIL-CQGRGSAANSAVCYALGITAVDA 410 Query: 382 LEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAV 441 ++ LLFERFL+ R PD DVD +R++VI+ V YGR+ +Q+ + ++ Sbjct: 411 VQHKLLFERFLSDGRSGPPDIDVDIESGRREEVIQFVYTRYGREHAAQVANVISYRPRSA 470 Query: 442 IRDVGRVLGHPYGFVDRISKLIPPD------PGMTLAKAFEAEP---------------- 479 +RD R G+ G D SK I A +A Sbjct: 471 VRDAARAFGYDVGQQDAWSKGIERWGTLRGPDPGNPDPAVKANATSTSSTSSSPSRATGT 530 Query: 480 ------QLPEIYEADEEVKA---------------LIDMARKLEGVTRNAGKHAGGVVIA 518 + + D ++D+A ++ + R+ G H+GG+V+ Sbjct: 531 AAGPKIREKGVDTHDPAPPRHAPASAREMGEIPNHVLDVAEQMLRLPRHLGIHSGGMVLC 590 Query: 519 PTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAK 578 + + P+ V Q+DK D AGLVKFD LGL LT + A E + + Sbjct: 591 HRPVIEVCPVEWATMPGRTVLQWDKDDCADAGLVKFDLLGLGMLTALRLAFEQVEATSGE 650 Query: 579 NGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALF 638 L + ++P +D K +++L ++T VFQ+ESR + RL+P F D++ VAL Sbjct: 651 R----LALHSLPQEDPKVYELLCAADTVGVFQVESRAQISTLPRLKPRNFYDIVVEVALI 706 Query: 639 RPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLS 698 RPGP+Q V FI R++G+E+++Y H L+ L T GI L+QEQ+MQIA ++ Sbjct: 707 RPGPIQGNSVHPFIRRRNGKEKVTY-----LHPLLEGALSKTLGIPLFQEQLMQIAIDVA 761 Query: 699 GYTLGGADMLRRAMGKKKP-EEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFN 757 G++ AD LRRAMG K+ E+M G G+ ++ +I+D ++ F+ +GF Sbjct: 762 GFSGSEADQLRRAMGSKRSLEKMEALHERLLAGMADRGVPRDVGEQIYDKLKAFSDFGFP 821 Query: 758 KSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDIN 817 +SH+ ++A + Y + WLK H+P F A ++ A LV + R G+ + I Sbjct: 822 ESHAFSFAYLVYASAWLKIHHPEAFFAGLLGAQPMGFYSPASLVADARRHGVVVRRASIA 881 Query: 818 SGLYHFHVN----DDGEI------------------------------VYGIG------- 836 H V D G + + Sbjct: 882 DSAVHALVEHGAADHGAVGLVPRATQSSETWLVDAGKADARGAAAVDPALPLDPAADAED 941 Query: 837 ----------AIKGVGEGPIEAI--------IEARNKGGYFRELFDLCARTDTKKLNRRV 878 A++ +G PI I + R++ F + DL R +L Sbjct: 942 ADGGPSGRRFAVR-LGLAPIRGIGEKTAERIVTERDRA-PFADAQDLARRV---RLTAAQ 996 Query: 879 LEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSY 938 LE L +GA G R + S G A + + Q + + + Sbjct: 997 LEALATAGALRCFGTSRREALWSAGAL---AGESGRVHLTSQGTVVQDVLG-GTASGVAA 1052 Query: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998 + V + GL +P ++ G + + E G + G Sbjct: 1053 PALPGMDAFEVASADVWATGLSPDRYPTEFVRPGLDA-AGVRPVATLGGIENGARVEVGG 1111 Query: 999 LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDD 1058 +V + T G + +L+D +G L V+ +Y+Q + L+V G V D Sbjct: 1112 VVTHRQRPGTAGG--VTFLSLEDETGLLNVICSPGLWARYRQTALRSPALVVRGTVERAD 1169 Query: 1059 FSGGLKMTAREVMDIDEAREKYARGLA 1085 G + + A + ++ +R Sbjct: 1170 --GVVNLMADGMRSLELRIPTQSRDFH 1194 >UniRef50_A3QER8 DNA polymerase III, alpha subunit n=3 Tax=Gammaproteobacteria RepID=A3QER8_SHELP Length = 1078 Score = 911 bits (2355), Expect = 0.0, Method: Composition-based stats. Identities = 283/1130 (25%), Positives = 491/1130 (43%), Gaps = 113/1130 (10%) Query: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61 +E ++ L V S+YS + G + LV++A LG ALA+TD + G+VK + A Sbjct: 3 AELQYAELHVLSNYSFLRGASHPHELVEQAKRLGYQALALTDECSFAGVVKAHEAAKRCD 62 Query: 62 IKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL 121 +K I+GA+F++ L +LA Y ++ LI+ A + + + + Sbjct: 63 LKLILGAEFHLDEGLF-------VLLAPCRFAYGEISALITNARRSQGKGEY-RVSLEAI 114 Query: 122 IELNEGLILLSGGRMGDVGRS--------------------------------------- 142 + + L+L + ++ Sbjct: 115 LAQQQSLLLWRPPSLAQFRQAGEARRDEARSDDARSDLAVNDTAESEMAGGDTAKGSAAQ 174 Query: 143 -----LLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVV 197 LL + + FPDR L + R P E L L++ + +P V Sbjct: 175 SDEPNLLSRYRDHIASIASRLVVAFPDRLHLLMERLLLPGEALNLQQWQWLSQTQKVPCV 234 Query: 198 ATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEAL 257 A VR ++ +I I G LD + + + ++ + + E + Sbjct: 235 AAGGVRMHEAERQPLLDILTCIAHGRDLDSGVALCSINAEASLKPIAAQRKRYPQ--EWI 292 Query: 258 ANTVEIAKRCNVTVRLGEYFLPQFPTG-DMSTEDYLVKRAKEGLEERLAFLFPDEEERLK 316 N + +A+RC+ ++ +Y P M DYL + +EG R PD Sbjct: 293 DNGLALARRCHFSLDELKYEYPAEVVPAGMQASDYLAQAVREGARRRFPDGVPDR----- 347 Query: 317 RRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKI 376 + E EL++I M + +FL + + + ++K + GRGS A S+V Y L I Sbjct: 348 ----VKAQYEKELELIAAMAYEYFFLTIYDIVCFAKSQQILY-QGRGSAANSVVCYCLGI 402 Query: 377 TDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTM 436 T++DP + ++LFERF++ ER PD DVDF E+R++VI+++ YGRD + Sbjct: 403 TEVDPTKINMLFERFISKERNEPPDIDVDFEHERREEVIQYIYRKYGRDRTALAAAVICY 462 Query: 437 AAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALID 496 K+ + DVG+ LG V + K I QL + + L+ Sbjct: 463 RFKSAMGDVGKALGIDAEQVALMIKNIDRRDPKHHW-----TTQLAAMLPEAGRGRMLLP 517 Query: 497 MARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDF 556 + + L G R+ +H GG +I+ +++ P+ V Q+DK D+E GL+K D Sbjct: 518 LVQTLIGFPRHLSQHVGGFIISAGPLSELVPIENAAMADRTVIQWDKDDLESLGLLKVDI 577 Query: 557 LGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGM 616 L L LT I +++ E +A + ++ + + MLQ ++ VFQ+ESR Sbjct: 578 LALGMLTAIRKTFTLLSL-----PEKAFSMADVAWEEAEVYRMLQAGDSIGVFQVESRAQ 632 Query: 617 KDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPV 676 ++ RL+P C+ D++ +A+ RPGP+Q MV ++ R+ G E + YP +++ V Sbjct: 633 SAMLPRLKPACYYDLVVQIAIVRPGPIQGDMVHPYLRRRDGLEAVEYPS-----PAVESV 687 Query: 677 LEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK-KKPEEMAKQRSVFAEGAEKNG 735 L T G+ ++QEQV+Q+A V +G++ G AD LRRAM K+ E+ K + +G G Sbjct: 688 LSRTMGVPIFQEQVIQLAMVAAGFSGGEADQLRRAMASWKRTGELEKFEAKLLQGMAARG 747 Query: 736 INAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTE 795 + A +I+ ++ F YGF +SHSA++AL++Y + +LK HYPA F A++ + Sbjct: 748 YSQTFAEQIYRQIKGFGEYGFPESHSASFALLAYVSAYLKHHYPAAFCCALLNSQPMGFY 807 Query: 796 KVVGLVDECWRMGLKILPPDINSGLYHFHVN-----DDGEIVYGIGAIKGVGEGPIEAII 850 L+ + R + +LP +N + + + I G +KG+ I+ +I Sbjct: 808 SPSQLIQDVQRHDVMVLPVCVNHSDWDNSLVPLLEAEQPAIRLGFRQVKGLRLEEIKTLI 867 Query: 851 EARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAAD 910 AR +GG F + L L++ L L + A L HR L + Sbjct: 868 AARPEGG-FTRVEQLYE----LGLSQGCLTLLASADALLTLAGHRYQARWQLSAYQPS-- 920 Query: 911 QHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYL 970 +F L ++ P E + + LGL L H + Q Sbjct: 921 ----------LPLFDDLPAVASEV-----VLAPPSEMAAMQSDYRHLGLSLGRHVMAQLR 965 Query: 971 KEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVML 1030 + +VG ++ G+++ AG+VV + T G + TL+D +G + V++ Sbjct: 966 G-LAPFVGCRHASELADCRHGQLVHVAGVVVGRQRPGTASG--VTFVTLEDETGNINVIV 1022 Query: 1031 FTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKY 1080 ++ +Q +IL V+G + SG + A + D+ + Sbjct: 1023 WSATARAQRQPFLTSKILKVTGVLETQ--SGVSHVIAGRLEDLSTLVNDF 1070 >UniRef50_Q5LVN0 Error-prone DNA polymerase n=30 Tax=Proteobacteria RepID=DNAE2_SILPO Length = 1101 Score = 910 bits (2352), Expect = 0.0, Method: Composition-based stats. Identities = 272/1121 (24%), Positives = 479/1121 (42%), Gaps = 104/1121 (9%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG------ 59 + L V ++++ + G + ++ +AA LG+ A+AITD +L G+V+ Y A Sbjct: 3 YAELCVTTNFTFLTGASHPEEMITRAAELGLHAIAITDRNSLAGVVRAYAALKELRREAD 62 Query: 60 --------AGI-----------------------KPIVGADFNVQCDLLGDELTHLTVLA 88 I + I G ++ D H L Sbjct: 63 EAIRIRSQHRIDSCSRQEVGHPQPIARPEAPRLPRLITGCRLVLR-----DSPLHWIALP 117 Query: 89 ANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNS 148 + YQ LT L++ +R + D L G G + +L +G Sbjct: 118 RDRAAYQRLTRLLTLGKRRAEKGDCHLDLADLL-----------AGCTGMILIALPQGRL 166 Query: 149 ALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSS 208 + + FP FL ++++L A LA P+VA D ++ Sbjct: 167 DGALPHLQQVQRRFPGHVFLGAAPRYDGSDQAWLAACARLALRSSAPMVAVGDALMHRAN 226 Query: 209 DFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCN 268 ++ + + T+D + ++ ++ +M LF D P AL T++IA RC+ Sbjct: 227 RRQLADVLTCMREHITIDRIGTRALPNAERRLKGHADMARLFRDHPAALRRTLDIAARCS 286 Query: 269 VTVRLGEYFLPQFPTGDMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETE 328 + Y P + + L + EG+ R P E + E Sbjct: 287 FCLSELSYEYPDEVAEGETPQARLERLTAEGIVRRYPGGAPQR---------VHELVAKE 337 Query: 329 LQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLF 388 L+++ ++GFP YFL V + +Q+++ G+ GRGS A S++ Y L ITD+ P + ++F Sbjct: 338 LKLVAELGFPAYFLTVHDIVQFARSQGIL-CQGRGSAANSILCYLLGITDVSPDQIAMVF 396 Query: 389 ERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRV 448 ERF++ R PD DVDF E+R++VI+ + YGR T ++A IR+VG+V Sbjct: 397 ERFISKYRGEPPDIDVDFEHERREEVIQWIYQRYGRHRAGLCATVIHFRSRAAIREVGKV 456 Query: 449 LGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNA 508 +G +S I E + D + I + ++ G R+ Sbjct: 457 MGLSQDVTASLSGQIWGQSNGGADPERMREL---GLDPEDRRLALTIRLIGEIIGFPRHL 513 Query: 509 GKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWA 568 +H GG VI ++ + AP+ + ++DK D++ G++K D LGL LT I A Sbjct: 514 SQHVGGFVITRGRLDELAPIENAAMEDRTLIEWDKDDIDTLGILKVDVLGLGMLTCIRKA 573 Query: 569 LEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCF 628 +++ + + L I +P +D ++DML ++ VFQ+ESR + + R++P F Sbjct: 574 FDLMREH----EQRHLSIDTVPQEDAATYDMLCAADAVGVFQVESRAQMNFLPRMRPRTF 629 Query: 629 EDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQE 688 D++ VA+ RPGP+Q GMV +I R+ G E+ L V T G+ L+QE Sbjct: 630 YDLVIEVAIVRPGPIQGGMVQPYIRRRQGLEKAE-----PFGPELAAVTARTLGVPLFQE 684 Query: 689 QVMQIAQVLSGYTLGGADMLRRAM-GKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDL 747 Q +QIA V +GYT AD LRR++ ++ + R F G +NG + E+A + F Sbjct: 685 QALQIAVVGAGYTAEEADHLRRSLASFRRMGTIGAHRDTFIAGMRRNGYSQEVAERCFGQ 744 Query: 748 VEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRM 807 +E FA YGF +SH+AA+A+++Y + WLK H+PA F A++ A +V + Sbjct: 745 IEGFADYGFPESHAAAFAMLAYVSAWLKCHHPAIFACALLNAQPMGFYAPAQIVRDARDH 804 Query: 808 GLKILPPDINSGLYHFHVNDDG----EIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELF 863 +++ P +N+ + + + G IKG E I+ AR G + + Sbjct: 805 QVELRPICVNASDWDNRLERRADGALALRLGFRQIKGFREEDAAWIVAARGNG--YPDPQ 862 Query: 864 DLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADM 923 L R + VLE+L + AF +G R + + + Sbjct: 863 ALWLRA---GVTPAVLERLAEADAFADMGIGRRDALWQVRAI----------RGQAPLPL 909 Query: 924 FGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLK 983 F + E I + + + + ++ L L HP+ I +L Sbjct: 910 FNDPLD-GEIIHEPQVTLPAMHLGEEVVEDYVSMRLTLRAHPMELLRPAIPGLTPHDKLA 968 Query: 984 DMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLE 1043 + ++ GLV+ + T G + TL+D +G V+++ +++++++ Sbjct: 969 SVAAH----RVSVCGLVITRQRPGTASG--VIFLTLEDETGVSNVVVWPKIYEQFRRIVM 1022 Query: 1044 KDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGL 1084 R+L V+G + + + + A+ + D+ + Sbjct: 1023 GGRLLRVTGTLQRE--GIVVHLIAQRIEDLSPRLADLGHPM 1061 >UniRef50_Q21LY9 Error-prone DNA polymerase n=12 Tax=Proteobacteria RepID=DNAE2_SACD2 Length = 1029 Score = 909 bits (2349), Expect = 0.0, Method: Composition-based stats. Identities = 285/1088 (26%), Positives = 502/1088 (46%), Gaps = 80/1088 (7%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 ++ L+ ++YS + + LV++A LG ALAITD +L G+VK + A +K Sbjct: 2 QYTQLQTLTNYSFLKSASHPQELVEEAKILGYHALAITDECSLAGIVKAHVAAKELNLKL 61 Query: 65 IVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL 124 +VG+ F + + +A N Y L+ IS A +R D L Sbjct: 62 LVGSYFELT------NGFKIIAIAPNRQAYAELSGFISLARRRASKGEYEAHLSDLRFRL 115 Query: 125 NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHA 184 + LI+ + V F R ++ + T E+ Sbjct: 116 QQCLIIWLPYFNNHISDVD-----------VTTLATAFKQRLWIGVSHTLIAAEQRLFSH 164 Query: 185 AVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEE 244 +LA A +P+VA+ + + +I AI + + + + + ++ Sbjct: 165 LNKLANALHVPLVASGLTYMHNKNCKPLLDILTAIRENTPIQQLGTRLHSNAEVNLKPLH 224 Query: 245 EMCELFADIPEA-LANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTE-DYLVKRAKEGLEE 302 E+ +L+ PEA + T IA+ CN ++ Y P+ +T +L K KEG + Sbjct: 225 ELNQLY---PEALIQQTQVIAQLCNFSLDELRYQYPKELVPSNTTPIAHLKKLVKEGEAK 281 Query: 303 RLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGR 362 R P+ +++ + EL +I +M + YFL V + + +++ + GR Sbjct: 282 RWPQGTPEHAQKI---------IAMELGLIEEMQYEYYFLTVHDIVHFARSKNIL-CQGR 331 Query: 363 GSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMY 422 GS A S+V Y L IT++ P + ++LFERF++ ER PD DVDF ++R++VI+++ Y Sbjct: 332 GSAANSVVCYCLFITEIAPGQINVLFERFISKERNEPPDIDVDFEHQRREEVIQYIYQKY 391 Query: 423 GRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISK-LIPPDPGMTLAKAFEAEPQL 481 GR+ + T T +++ IRDVG+ +G G V +++K L D L K E+ Sbjct: 392 GRERAALAATVITYRSRSAIRDVGKAMGLEAGLVGQLAKSLAWWDRTGDLIKRMESFGLN 451 Query: 482 PEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQF 541 PE + ++ + +++ G R+ +H GG +I K++D PL + Q+ Sbjct: 452 PETQKT---MQHFFALVQQILGFPRHLSQHVGGFIITQDKVSDLVPLENASMPDRTIIQW 508 Query: 542 DKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQ 601 DK D+E GL+K D L L LT + +LE +++ A +A IP +D ++ ML Sbjct: 509 DKYDIEAMGLLKVDVLALGMLTALRKSLETVSQYDAAVYS----LATIPREDPATYAMLS 564 Query: 602 RSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEI 661 + ++ VFQ+ESR ++ RL+P CF D++ +A+ RPGP+Q MV ++ R+ G EE+ Sbjct: 565 KGDSIGVFQVESRAQMSMLPRLRPKCFYDLVIEIAIVRPGPIQGDMVHPYLRRRDGIEEV 624 Query: 662 SYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK-KKPEEM 720 Y Q++ +K VLEPT GI ++QEQ +++A V + ++ G AD LRRAM K + Sbjct: 625 HY-----QNDKIKSVLEPTLGIPIFQEQAIRLAMVAADFSGGEADQLRRAMASWGKNGSL 679 Query: 721 AKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA 780 K F +G NG + A ++F+ ++ F GYGF +SHSA++AL+ Y + WLK H+PA Sbjct: 680 LKFEDKFIQGMLNNGYPLDFAHRLFEQIKGFGGYGFPESHSASFALLCYASSWLKCHHPA 739 Query: 781 EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN--------DDGEIV 832 F A++ + L+ + R + +LP ++N+ Y HV I Sbjct: 740 AFYCALLNSQPMGFYSASQLIQDARRHKVVVLPVEVNASGYESHVVLTNHNTSAPPNIIQ 799 Query: 833 YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892 G+ IKG+ E I+ A F L +L R +L+ L+ L + A +L Sbjct: 800 LGLHMIKGLSILTAERIVLA-KGDKPFTTLKELSLRA---QLSSADLQLLASADALHKLT 855 Query: 893 PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDG 952 +R + + ++E+ + + + Sbjct: 856 GNRHNSRWQAAALMPH-----------------SPLLDGAELEEDALNTPAPSIEKNIQT 898 Query: 953 ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012 + + GL L HP+ + + + + ++ G AGLV + T +G Sbjct: 899 DFNSTGLSLRLHPMALLRAQ-QPFNRCKKQSELASIHNGGFAQVAGLVTGRQRPGTAKGT 957 Query: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072 TL+D +G + ++++T ++ +Q L ++L+V G++ D + A ++ D Sbjct: 958 L--FLTLEDETGNINIVVWTSTQERCRQALLTAKLLLVKGRLETKD--NVTHIIAGQMFD 1013 Query: 1073 IDEAREKY 1080 ++ Sbjct: 1014 YSHMLSEF 1021 >UniRef50_B9E7A8 DNA polymerase III alpha chain n=1 Tax=Macrococcus caseolyticus JCSC5402 RepID=B9E7A8_MACCJ Length = 1051 Score = 907 bits (2345), Expect = 0.0, Method: Composition-based stats. Identities = 355/1157 (30%), Positives = 577/1157 (49%), Gaps = 118/1157 (10%) Query: 7 VHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIV 66 VHL VHS Y ++ + LV + L A+A+TDF L G+ FY A A IKPI+ Sbjct: 6 VHLNVHSAYDLLHSTVEIDALVTRVTELKEHAVALTDFNVLFGVQSFYKACIAADIKPII 65 Query: 67 GADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNE 126 G + V L + LA NNTGY NL L S+ +G + WL + Sbjct: 66 GMEICVTDGL---KQLRAVCLARNNTGYVNLIKLSSRIQLKG----VELTPLKWLSQYQS 118 Query: 127 GLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAV 186 G+I++ + + E HF I Sbjct: 119 GIIVI--------------------FKSITESESHFTQGIESYYICHNSS---------- 148 Query: 187 ELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEM 246 V DV +++SS E+ AI + L + R + YM+ + ++ Sbjct: 149 -----LDAKKVYIEDVLYLESSGVQHLEVLNAIEENKKL-PLEMVRIKAGTAYMKDDVQL 202 Query: 247 CELFADIP-EALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKEGLEERLA 305 +L IP E L T EIA +CNV + +P+FP S++ YL+K +E ++R Sbjct: 203 IDL--KIPQEYLDRTHEIADQCNVDITKHHATMPKFPVEGYSSDAYLMKLLQE--KKR-- 256 Query: 306 FLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSG 365 E Y++RL E VI QMG+ YFLIV + IQ++K++ + VGPGRGS Sbjct: 257 -------EIPHFDERYEQRLRYEYDVITQMGYADYFLIVGDLIQYAKEHDILVGPGRGSS 309 Query: 366 AGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRD 425 GSL++Y L IT++DP++++LLFERFLNPERV+MPD D+DF KRDQVI++ D YG+ Sbjct: 310 GGSLISYVLGITEVDPVQYNLLFERFLNPERVTMPDIDIDFEDTKRDQVIQYAVDKYGKY 369 Query: 426 AVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIY 485 VS I+TFG + A+AV+RD GR+L + +IS LIP G+TL + + Sbjct: 370 NVSGIVTFGHLNARAVMRDTGRILQFSDAELKKISTLIPKRVGITLDD-MKMDEDFMRFI 428 Query: 486 EADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSD 545 D+ K D+A LEG+ RN HA GV+I +TD+ P+ + +TQ+ ++ Sbjct: 429 NEDDRRKQWFDIAYALEGLPRNTSTHAAGVIIHDQLLTDYVPIIEGDS--VSLTQWTMTE 486 Query: 546 VEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSET 605 VE GL+K DFLGLR L+II ++ + LD+ +PLDD K + +L + +T Sbjct: 487 VESIGLLKIDFLGLRNLSIIRNVMDQVR----IQFNQQLDLNTLPLDDPKVYTLLAQGDT 542 Query: 606 TAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPD 665 T +FQLES G++++++ L+P F D++A++AL+RPGP++ + +I+R+HG + + Y Sbjct: 543 TGIFQLESEGIRNVLRNLKPSHFNDIVAVLALYRPGPMEQ--IPVYIERRHGAQSVDY-- 598 Query: 666 VQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRS 725 H+ LK +L+ T+G+I+YQEQ+MQIA +G++ G AD+LRRAM KK + ++ Sbjct: 599 ---IHDDLKAILKDTFGVIIYQEQIMQIANQFAGFSYGEADILRRAMSKKDMSVLLTEKE 655 Query: 726 VFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAA 785 F G+ G + + A I++L+ KFA YGF K+H+ AYA ++Y L+LK HYP F A Sbjct: 656 HFILGSVNKGYDKQTAEAIYELILKFANYGFPKAHAVAYAKIAYYMLYLKVHYPNIFYTA 715 Query: 786 VMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGP 845 +++ + + K ++DE + G+ I DIN +++ DG I+ +G IKG+G Sbjct: 716 ILSNQIGSEHKTKEIIDEVKKRGIPIYAADINKAHWYYRTYKDG-ILNALGVIKGLGYKS 774 Query: 846 IEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDA 905 ++ II+AR + G F++++D CAR ++ ++ +LE LI +G FD G RA L+ SL Sbjct: 775 VQDIIDARKQ-GSFKDIYDFCARIPSRIASKPLLEALIHAGCFDSFGHTRATLLASLDMI 833 Query: 906 LKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHP 965 + + E+ L ++ Y + + + E+ LG YLT HP Sbjct: 834 IDVERTNEGEES--------FLESLGLNKKKDYIIHEEMSDMKKAEYEKAYLGFYLTNHP 885 Query: 966 INQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGR 1025 + K ++ + ++ + R + TK G + D + Sbjct: 886 VESRFKALQYLPLYKIAQRLNQHY------MLIFIDEVRRIRTKNGQPMAFIKGFDGTDN 939 Query: 1026 LEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKY---AR 1082 ++++ F D K++ +++ +++++G+ + A + ++ + AR Sbjct: 940 IDIVCFPDTYRKFETVIQSHEMIVINGKFDSNRGKDNY--IAETIETVESFMNRIYEEAR 997 Query: 1083 GLAIS--LTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSD 1140 + I L + I D+ +L +Y+ RA + S Sbjct: 998 FIYIREPLPESIILDEGEIQL---------------IYFDRAQHVIG---------TVSK 1033 Query: 1141 RLLNDLRGLIGSEQVEL 1157 + +L E + + Sbjct: 1034 DKIKELVEYFNPEDIRI 1050 >UniRef50_Q6M7C6 Error-prone DNA polymerase n=7 Tax=Bacteria RepID=DNAE2_CORGL Length = 1055 Score = 906 bits (2342), Expect = 0.0, Method: Composition-based stats. Identities = 303/1078 (28%), Positives = 481/1078 (44%), Gaps = 96/1078 (8%) Query: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61 + F L S Y+ + G + + +V +A LG+ AL++ D G V+F A AG Sbjct: 56 ASVPFAELHATSSYNFLTGASDPSDVVVQAKKLGLVALSVMDRDGFYGAVRFAEAAAEAG 115 Query: 62 IKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQ-RGYGAAGPIIDRDW 120 + + GA+ ++Q + LTVL N GY+ L+ LIS A G Sbjct: 116 MHTVYGAELSLQEGV-------LTVLCKNPEGYKKLSHLISDAKMATGEKGEVRYPPLPM 168 Query: 121 LIELNEG-LILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEE 179 + E G ++L+G +D+ + P+ LE T P++ Sbjct: 169 VAEHAAGDWVVLAG--------------FQWLDKIDYVIDCFKPENIVLEFGSTMTPEDA 214 Query: 180 SYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQY 239 L + + + + A+ L D + + + Sbjct: 215 DRNEYLRRTQAKFQLRGILSTNPESAARGSVRLAGAKQALARKMPLADAESELHPMGTTW 274 Query: 240 MRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTE-DYLVKRAKE 298 MRS + + + D + +A TVE+A C T+ L LP++ T TE +L Sbjct: 275 MRSGDTLLKAHPDYADLIATTVELAAECAFTLDLVAPNLPKWDTPGEHTEMSWLAHLVST 334 Query: 299 GLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPV 358 ++ R D + R +++ EL VI ++GFPGYFL+V + +++ +D+ + Sbjct: 335 RIDTRYVGRSADIKARAAT------QIDYELGVIEKLGFPGYFLVVNDLVEFCRDSNIL- 387 Query: 359 GPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHV 418 GRGS A S V + L IT+ +P+ LLFERFL+P+R PD D+D +R++VI++V Sbjct: 388 CQGRGSAANSAVCFVLGITNAEPISAGLLFERFLSPDRDGPPDIDIDIESGRREEVIQYV 447 Query: 419 ADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAE 478 + YGRD +Q+ T K +RD R LG+P G D +K Sbjct: 448 YEKYGRDNAAQVANVITYRTKGAMRDAARALGYPQGAADAWAK----------------- 490 Query: 479 PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538 E ++++A + +G R+ G H+GG+VI I D P+ V Sbjct: 491 -------GTSEPPDDVLELAAQFKGQPRHLGIHSGGMVICDRPIADVVPVEWARMDNRSV 543 Query: 539 TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598 Q+DK D AGLVKFD LGL L I+ L+++ + R K +++ + L + + +D Sbjct: 544 VQWDKDDCATAGLVKFDLLGLGMLEAIHHMLDLVAEHRGK----KINLWELDLAEPEVYD 599 Query: 599 MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658 ML +++ VFQ+ESR + RL+P F D++ VAL RPGP+Q G V ++ R+ G Sbjct: 600 MLCKADAVGVFQVESRAQLSTLPRLKPRTFFDLVVEVALIRPGPIQGGSVHPYLRRRAGE 659 Query: 659 EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKK-P 717 E I+Y H L+ L T GI L+QEQ+MQ+A +G++ G AD LRRAMG K+ P Sbjct: 660 EAITY-----DHPVLEKSLGKTLGIPLFQEQLMQVAVDAAGFSGGEADSLRRAMGSKRSP 714 Query: 718 EEMAKQRSVFAEGAEK-NGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKA 776 E MA RS F +G + NGI E A K+++ + FA YGF +SHS ++A + Y + W K Sbjct: 715 ERMAALRSRFFQGLKDTNGIVGETAEKLWNKIVAFAAYGFPESHSQSFASLVYFSAWFKY 774 Query: 777 HYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIG 836 HYPAEF ++ A L+ + R G+ ILP +N +G I G+ Sbjct: 775 HYPAEFCVGLLRAQPMGFYSPQSLISDARRHGVSILPITVNDSGVEADA-PNGAIRLGLN 833 Query: 837 AIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRA 896 +KG+G + I F + DL R D LN +E L +GA D LG R Sbjct: 834 LVKGLGHDAAQRI----EDNAPFDSIPDLSRRAD---LNVAQVEALARAGAVDCLGVGRR 886 Query: 897 ALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERET 956 + A E G V+ + ++ Sbjct: 887 QALWQ--------AGVAATEKPGMLPGLSVIE---------APALPGMSAFELMATNISA 929 Query: 957 LGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGI 1016 G+ P+ + +E +G V + E G + AG+V + T G + Sbjct: 930 TGVTADYQPMALIRERMEE-LGIVPADRLLEVEDGTRLRIAGIVTHRQRPQTASG--LTF 986 Query: 1017 CTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDID 1074 ++D +G + VM+ + + L + LI+ G V + G + A + +D Sbjct: 987 LGMEDETGLMNVMVSVGLWQRQRVLARNAKALIIRGIVQ--NAQGVATVVADRLEPLD 1042 >UniRef50_Q8KTR8 DNA polymerase alpha subunit n=1 Tax=Candidatus Tremblaya princeps RepID=Q8KTR8_TREPR Length = 1083 Score = 900 bits (2327), Expect = 0.0, Method: Composition-based stats. Identities = 384/1079 (35%), Positives = 579/1079 (53%), Gaps = 46/1079 (4%) Query: 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64 FVHLR+HS+YSM DG+ + V A A +LA+TD N+ G VKFY A +G+KP Sbjct: 17 DFVHLRMHSEYSMHDGMVRVEDAVNAARADMQCSLALTDLNNVFGAVKFYKAAVRSGVKP 76 Query: 65 IVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLI-- 122 IVG ++ + + + LA + GY+N+ +++ A+ +D WL Sbjct: 77 IVGCHLLLR--GAFGDTSSVLALARSGGGYRNMCRILTAAWSDAATCVEARVDMRWLAGS 134 Query: 123 -ELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESY 181 + +G+++LSG G +GR ++ GN + V + ++LEL R+G E+Y Sbjct: 135 PRILKGIVVLSGALDGPIGRHIIEGNYSAARRSVDDWLTMTQGSFYLELQRSGHSGTETY 194 Query: 182 LHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMR 241 +H A+EL+ +PVVAT+ ++FI SD+ H +R + G ++ +Q+ + Sbjct: 195 VHRALELSMYSMVPVVATHPIQFIAPSDYPLHCVRCGMAAGTLGSRATGM--FTREQHFK 252 Query: 242 SEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKRAKEGL 300 S E M +F DIP A++NT IA+ CN+ + +G P F + L GL Sbjct: 253 SRESMSRIFRDIPSAISNTCAIARMCNLDMDIGRLRRPVFAVCSPCNEASALACTLGSGL 312 Query: 301 EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360 R+ R EY R+ E +++ MGF GYFLIV +F+ W++ G+PVG Sbjct: 313 RSRIMDGRMPRFTG--TRREYAARIREEYRIVAGMGFCGYFLIVSDFVGWARARGIPVGS 370 Query: 361 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420 GRGSGAGSL+AY L ITD+DP++ LLFERFLNPERV+MPD D+DFC E RD+V+++V Sbjct: 371 GRGSGAGSLMAYVLGITDIDPIQHGLLFERFLNPERVTMPDLDIDFCQEGRDRVVQYVRR 430 Query: 421 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAFEAE 478 Y +V+QI TFGTMAA+A +R+ R +G Y D I++L+P PG +T+ + + Sbjct: 431 RYSNGSVAQITTFGTMAARASVREAARAMGVSYTLADSIARLVPIRPGARVTIPNSLKEV 490 Query: 479 PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPV 538 L Y ++ +V+ LID A ++EG+ RN HAGG++I+P I D PLY PV Sbjct: 491 RMLRSRYASEGDVRLLIDTASRMEGLVRNMAVHAGGIIISPADIQDLCPLYQQAGSIVPV 550 Query: 539 TQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFD 598 +Q DK D E GLVKFDFLGL TLTI++ A + + L P D +F Sbjct: 551 SQLDKDDAESLGLVKFDFLGLTTLTILSCAARCVVGTGRAVSQHSLCG---PPCDSATFG 607 Query: 599 MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 658 +LQ ++T AVFQLE GM++ ++ PD D+IAL++L+RPGP++ V ++ RKHG Sbjct: 608 LLQAADTVAVFQLEGIGMQEALRITVPDRLGDIIALISLYRPGPMRL--VRSYCRRKHGV 665 Query: 659 EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 718 E E L P+L TYG+++YQEQVM+IAQ + GYT G AD+LRR M +K+P Sbjct: 666 EA-----AFVVDERLLPILGETYGVMVYQEQVMRIAQAMGGYTPGEADLLRRVMSRKQPR 720 Query: 719 EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 778 +MA R F GA + GI A+ +F+ ++KFA YGFNKSH+AAYA +SYQT W+KA + Sbjct: 721 DMAAHRISFVNGASRLGIGGSSAVAVFEHIKKFASYGFNKSHAAAYATMSYQTAWVKARH 780 Query: 779 PAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHV------NDDGEIV 832 P +FMAA M+ + + +++ L +C R G+ + PD+N Y F G IV Sbjct: 781 PVDFMAANMSGSLRDYDRLRLLRLDCARRGVPLRAPDVNRPSYRFTPISCYGSEGHGYIV 840 Query: 833 YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRL- 891 YG+GA+K GE + I R FR L+D AR +++ + R +E LI +GAFD Sbjct: 841 YGLGAVKCGGEAVVRDIARCREDR-PFRSLYDFLARINSRIVKRSAVECLIKAGAFDCKP 899 Query: 892 GPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLD 951 G RA ++ L A++ A ++ + + + W + + Sbjct: 900 GGARATMLAVLPAAMR-------DRHEPTALLWRI---QQPTSAACLIAASAW--RFAVQ 947 Query: 952 GERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRG 1011 E E LG Y + HP ++ +T G+ ++ G Sbjct: 948 HESEALGYYFSIHPFSRCRGAARSIAAMGIDAIRRRARPHATLTLCGVALSMGARSGPEG 1007 Query: 1012 NRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREV 1070 + + ++D S V T ++ +L + L+V+G+V L +T + Sbjct: 1008 HS-AMAAIEDDSDCCTVYCATGSVA--GPVLIR-SPLVVTGRVYVSKDRERLSVTTLRL 1062 >UniRef50_Q2IU52 Error-prone DNA polymerase n=43 Tax=Proteobacteria RepID=DNAE2_RHOP2 Length = 1165 Score = 900 bits (2327), Expect = 0.0, Method: Composition-based stats. Identities = 262/1156 (22%), Positives = 474/1156 (41%), Gaps = 114/1156 (9%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 M+ PR+ + V +++S ++G + V +A+ LG+ A+ I D L G+V+ Y Sbjct: 1 MNAPRYAEIGVTTNFSFLEGGSHPQDYVHQASRLGLDAIGIADRNTLAGVVRAYSELDNE 60 Query: 61 GI----KPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPII 116 + K ++GA D + + Y L L+S R + Sbjct: 61 ELAYKPKLLIGARL-----CFVDGTPDVLAYPTDRAAYGRLCRLLSAGKLRAGKGECHLT 115 Query: 117 DRDW-----------LIELNEGLILLS----------------GGRMG-----------D 138 D GL S G G Sbjct: 116 FADLEAFVSSNAARPFPSSWPGLTRPSTSLQPRVLQDVDARDKPGHDGGKREIGRSQILF 175 Query: 139 VGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVA 198 V R + + + +L L R D++ L +A A +P +A Sbjct: 176 VLMPPYRFQAKAITAALERLTALNSGNVWLALAPYYRGDDKRRLARLRRIAAAADVPGIA 235 Query: 199 TNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALA 258 TNDV + S ++ + D T+D R + +++++ EM LF +A+A Sbjct: 236 TNDVLYHHPSRRALQDVLTCVRDKTTIDKAGRRLEGNAERHLKPAAEMARLFRADLDAVA 295 Query: 259 NTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKRAKEGLEERLAFLFPDEEERLKR 317 T+ A R + T+ +Y P P + + +L +EG+ D Sbjct: 296 ETLRFADRISFTLDELKYHYPDEPVPPGKTAQQHLEDLTREGIATYFPNGISDR------ 349 Query: 318 RPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKIT 377 + EL +I + + YFL V + +++++ + GRGS A S V Y L IT Sbjct: 350 ---LRATIAKELTLIAKRDYAHYFLTVHDIVRYARSQNIL-CQGRGSAANSAVCYVLGIT 405 Query: 378 DLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMA 437 +DP E DLLFERF++ ER PD DVDF +R++V++++ YGR + + T Sbjct: 406 CVDPTEIDLLFERFVSEERDEPPDIDVDFEHSRREEVMQYIYRRYGRHRAAIVSTVIHYR 465 Query: 438 AKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDM 497 ++ IRDVG+ LG ++ + G L+ E + + + + + +++ Sbjct: 466 PRSAIRDVGKALGLSEDVTAALADTVWGSWGKGLS---EMQVRQAGLDPTNPMIGRAVEL 522 Query: 498 ARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFL 557 A +L G R+ +H GG V+ ++ + P+ ++DK D++ ++K D L Sbjct: 523 ATELIGFPRHLSQHVGGYVLTQDRLDSYVPIGNAAMADRTFIEWDKDDIDAVKMMKVDVL 582 Query: 558 GLRTLTIINWALEMINKRRAKNGEPPLDIAAI-PLDDKKSFDMLQRSETTAVFQLESRGM 616 L LT I ++I + + ++ I DD + MLQR E+ VFQ+ESR Sbjct: 583 ALGMLTCIRKGFDLIAQHKGVR----FQLSDIKSEDDNNVYQMLQRGESIGVFQVESRAQ 638 Query: 617 KDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQ---HESL 673 +++ RL+P CF D++ VA+ RPGP+Q MV ++ R++G+E + YP + L Sbjct: 639 MNMLPRLKPRCFYDLVIEVAIVRPGPIQGDMVHPYLRRRNGQEPVVYPSPSGEAGDKNEL 698 Query: 674 KPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMG-KKKPEEMAKQRSVFAEGAE 732 + +L T G+ L+QEQ M+IA + +T A+ LRRAM + + K S Sbjct: 699 QQILGKTLGVPLFQEQAMRIAIEAAHFTPDEANQLRRAMATFRNVGTIGKFESKMIGNLM 758 Query: 733 KNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMD 792 G +A A F+ ++ F YGF +SH+A++A + Y + W+K +P F A++ + Sbjct: 759 ARGYDATFAKNCFEQIKGFGSYGFPESHAASFAKLVYVSAWMKCEHPDAFCCALLNSQPM 818 Query: 793 NTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDD----GEIVYGIGAIKGVGEGPIEA 848 +V + +++ P D++ + + + G I G + Sbjct: 819 GFYAPAQIVGDARANKVEVRPVDVSFSDGQCTLEERCGAYHAVRLGFRQIDGFRWADPD- 877 Query: 849 IIEARNK--------------------GGYFRELFDLCARTDTKKLNRRVLEKLIMSGAF 888 E R + G F L L +R L L + AF Sbjct: 878 --EERVRLEAGLPPSDDWAARIVAARARGPFGSLEQFAR---ITALPKRALILLADADAF 932 Query: 889 DRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQV 948 LG R A + ++ +F + +Q EQ+ P Sbjct: 933 RSLGLDRRAALWAVRRLPDDV----------PLPLFEAASAREQQDEQAAP-LPQMPMAE 981 Query: 949 VLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVT 1008 + + +T+ L L GHP+ + G+ + AG+V+ + + Sbjct: 982 HVVADYQTVRLSLKGHPLEFLRAVFATERVVTCREVSETRRNGRRVRCAGVVLVRQRPGS 1041 Query: 1009 KRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAR 1068 G + T++D +G ++++ ++K+++ + R+++V G++ G + + A Sbjct: 1042 ASG--VIFMTIEDETGIANIVVWPSVMEKFRKEVMGARLILVEGKIQASP-EGVVHLVAE 1098 Query: 1069 EVMDIDEAREKYARGL 1084 ++D + + GL Sbjct: 1099 RLVDRSSEMGRLSEGL 1114 >UniRef50_B4W721 DNA polymerase III, alpha subunit subfamily, putative n=4 Tax=cellular organisms RepID=B4W721_9CAUL Length = 1121 Score = 900 bits (2325), Expect = 0.0, Method: Composition-based stats. Identities = 271/1147 (23%), Positives = 471/1147 (41%), Gaps = 102/1147 (8%) Query: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGA----- 56 S P + L S++S + G + LV A G L + D + G+V+ + A Sbjct: 6 SPPAYAELAAASNFSFLRGASHPKSLVLSAILRGHTGLGLADRNTVAGVVRAWSALNTLR 65 Query: 57 ------------------------------------GHGAGIKPIVGADFNVQCDLLGDE 80 + + GA Sbjct: 66 VEGLSPPEKVRDGGGPGETGFVEDLMNDPALSDMVEARAQDFRLLTGARLAFNDG----- 120 Query: 81 LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVG 140 + A + G+ LT L++ +R I D L G G + Sbjct: 121 TPDIIAYAEDRAGWGRLTRLLTLGNRRAVKGQCEIGISDLL-----------GDPEGLLL 169 Query: 141 RSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATN 200 + + + ++ E P +L + D+ L +A +P++A N Sbjct: 170 IVIPERHLEALPPLLSRLEAAAPGSVWLSAAMLRQGDDRRRLTRLKAIANVADVPLLAIN 229 Query: 201 DVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANT 260 DV + D S+ D ++ I +G T++ R + +++++ EM LFAD PEAL T Sbjct: 230 DVLYHDPSERDLQDVLTCIREGVTIEAAGRRLLANAERHLKPPAEMARLFADAPEALEQT 289 Query: 261 VEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLVKRAKEGLEERLAFLFPDEEERLKRRP 319 + R ++ Y PQ PT S++ YL + R Sbjct: 290 QLLLDRARFDLKDLTYNYPQEPTPPGWSSQAYLEDLTWRHAQIRYPGGV---------SA 340 Query: 320 EYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDL 379 + + L EL I GF YFL + + ++ + G+ GRGS A S V Y L IT + Sbjct: 341 KVTDLLNKELAFIQIQGFAPYFLTIHDIVRVANSKGIL-CQGRGSAANSAVCYVLGITCV 399 Query: 380 DPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAK 439 DP E DLLFERFL+ R PD DVDF E+R+++I+H+ D YGR T K Sbjct: 400 DPAENDLLFERFLSDHRGEPPDIDVDFEHERREEIIQHIYDRYGRHRAGIAATVIRYRPK 459 Query: 440 AVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMAR 499 + IR+VG+VLG R++ G + + + A+ + + MA Sbjct: 460 SAIREVGKVLGLTEDVTARLAASQWGSWGAEIGDC---HVEQAGLDPANPMIGRAVAMAS 516 Query: 500 KLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGL 559 +L G R+ +H GG ++ ++ + P+ ++DK D++ L+K D L L Sbjct: 517 RLLGFPRHLSQHVGGFILTQDRLDELVPIGNAAMPDRTFIEWDKDDIDDLRLMKVDVLAL 576 Query: 560 RTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDL 619 LT I AL +++ + ++ +P + +DML + ++ VFQ+ESR ++ Sbjct: 577 GMLTCIRKALNLMHAH----DDAAYELHTVPNEQADVYDMLCKGDSIGVFQVESRAQINM 632 Query: 620 IKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQH--ESLKPVL 677 + RL+P F D++ VA+ RPGP+Q MV ++ R+ EE Y H + LK VL Sbjct: 633 LPRLKPRTFYDLVIQVAIVRPGPIQGDMVHPYLRRRAKLEEPEYSKPAPPHDPDELKKVL 692 Query: 678 EPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE-EMAKQRSVFAEGAEKNGI 736 T G+ L+QEQ M++A V + +T A+ LR+AMG + + + K + G Sbjct: 693 HKTLGVPLFQEQAMKVAMVAAEFTPKEANGLRKAMGTFRGDGTLWKYEGRMVNRMVERGY 752 Query: 737 NAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEK 796 + A + FD ++ F YGF +SH+A++ + Y + ++K YPA F A++ + Sbjct: 753 ERDFAQRCFDQIKGFGSYGFPESHAASFGKLVYISSFIKCRYPAAFACALLNSQPMGFYA 812 Query: 797 VVGLVDECWRMGLKILPPDINSGLYHFHVNDDG---EIVYGIGAIKGVGEGPIEAIIEAR 853 +V + G++I P D+N + + + G I G E +A++ AR Sbjct: 813 PAQIVRDAQEHGVEIRPIDVNLSDWDNTLEGPPGLLALRLGFRQIDGFREEWAKALVVAR 872 Query: 854 NKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHA 913 ++ F + L R + KL + AF +G R + ++ A Sbjct: 873 SRS--FEGVEALAGRASLPG---SAMRKLADADAFRSIGMDRREALWAVRRLPDDAPL-- 925 Query: 914 KAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEI 973 A+ E E+ A + + +T L L HP+ I Sbjct: 926 ---------PLFAAADARELGEEDDARLPRMALGEHVAADYQTTRLSLKAHPMAILRP-I 975 Query: 974 ERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTD 1033 + ++ G + AG+V+ + +GN I TL+D +G ++L+ Sbjct: 976 FAAENTLTCAELETRRSGAKVRTAGVVLVRQRPG--KGNAI-FITLEDETGVTNLVLWAR 1032 Query: 1034 ALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQI 1093 ++Y++++ R++ V G V G + + V D ++ + +T + Sbjct: 1033 MFEEYRRVVMAARLMGVEGVVEKSP-EGVVHLMTHRVFDRSAELDRLSDANTTEITPSRA 1091 Query: 1094 DDQLLNR 1100 D+ + + Sbjct: 1092 DEIIRPQ 1098 >UniRef50_Q6MQS6 Error-prone DNA polymerase n=1 Tax=Bdellovibrio bacteriovorus RepID=DNAE2_BDEBA Length = 1061 Score = 897 bits (2318), Expect = 0.0, Method: Composition-based stats. Identities = 268/1096 (24%), Positives = 486/1096 (44%), Gaps = 88/1096 (8%) Query: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGH------- 58 FV L S++S + G + +V +A G +A+ D L G+V+ + Sbjct: 25 FVELLGRSNFSFLQGASSPEEMVSQAVEFGYDGMALCDLNGLYGVVRGFQTIQSPSLFTA 84 Query: 59 ----GAGIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGP 114 ++G++ + + + ++ N GY +L +++ ++ Sbjct: 85 SPQVKENFHYLIGSELTLTDES------SVVLIPMNKQGYSHLCEILTLGKRQAAKGFS- 137 Query: 115 IIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTG 174 + + + + N+GL+ L+ DE E+ F +R +L L R Sbjct: 138 KLSLEQIEKYNQGLLCLA--------------LPPWTDERYEKLEKIFDNRLYLPLWRDL 183 Query: 175 RPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNY 234 + + + L E + T ++ TL + K Sbjct: 184 TWESQEFCRQGFALEEKYKAQLFVTQRPFMHSPERKPLFDVLTCTLHHTTLAEAKNKLIQ 243 Query: 235 SPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-STEDYLV 293 + ++ ++S E++ L+ D + + TVEI+ R ++ Y P + +Y+ Sbjct: 244 NSERCLKSLEDISWLWQDRLDLVEKTVEISARVTFSLNEIRYRYPASSLPSGMTPTEYMR 303 Query: 294 KRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKD 353 +G E R PD+ +++E EL++I + + YFL + E ++ + Sbjct: 304 HLTLKGAESRYPEGIPDKA---------LKQIEHELELIKDLQYEDYFLTLKEICDFASE 354 Query: 354 NGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQ 413 + GRGS A S+V + L +T +DP++ DLLFERFL+ ER PD D+DF +R++ Sbjct: 355 RKILY-QGRGSAANSVVCFCLGLTAIDPVKMDLLFERFLSRERREPPDIDIDFEHSRREE 413 Query: 414 VIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAK 473 VI+H+ + Y + + T ++ IR+ +V G P ++ + K + D L Sbjct: 414 VIQHIYEKYNERHAAMVCTVIRYRSRMAIRETAKVFGMPLAKINAMIKFMGRDGMKRLLD 473 Query: 474 AFEAEPQLPEIYEADE-EVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDE 532 P + + + K + +A++L G R+ G H GG +I IT+ P+ Sbjct: 474 -----PAVAADFGMEPGPWKMFMALAQQLHGFPRHLGIHTGGFLITQDPITEMVPVEKAT 528 Query: 533 EGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLD 592 V Q++K DV++ L+K D L L LT + +++ + ++ +A +P D Sbjct: 529 MNGRYVIQWNKDDVDFLRLMKIDVLSLGMLTCLRKCFDLLRDVKGRDYS----LATLPAD 584 Query: 593 DKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFI 652 DK ++DM+ R+ET VFQ+ESR + + R+QP F D++ +AL RPGPLQ GMV F+ Sbjct: 585 DKPTYDMICRAETVGVFQIESRAQMNTLPRMQPRNFYDLVIEIALIRPGPLQGGMVHPFL 644 Query: 653 D-RKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRA 711 R++ +EI Y H +L+P+L+ T GI ++QEQVM++ ++ +T G AD LRR Sbjct: 645 KLRQNPPKEIKYA-----HPALEPILKKTMGIPIFQEQVMKMVVAVADFTPGEADELRRV 699 Query: 712 MGK--KKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSY 769 M K+ M G ++GI++E A +IF +E FA YGF +SHSA++AL++Y Sbjct: 700 MSSAWKRKATMGGIEQRLRTGFARHGISSEYADQIFKTIEGFANYGFPESHSASFALLTY 759 Query: 770 QTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDG 829 + +LK HYP F ++ + ++ E R G+ + P D+ Y + + Sbjct: 760 ASCYLKCHYPDVFACGLLNSQPMGFYAPRTIIAEAQRNGVVVAPLDVQKSDYDYTIEKTA 819 Query: 830 E---IVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 + G+ +I G+ E I I ++R + G + +L D RT +L R VL KL +G Sbjct: 820 AGDLLRVGLRSIYGIPEVLIRRIEDSRKEEGLYIDLADFIRRT---QLPRSVLLKLAAAG 876 Query: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPE 946 AF+ + L+ +L Q ++ E Sbjct: 877 AFESFNSNVRELIWNLESLSLDQQSFLWGHPKEQFELGEDDDEPE--------HLPFESN 928 Query: 947 QVVLDGERETLGLYLTGHPINQYLKEI---------ERYVGGVRLKDMHPTERGKVITAA 997 L E ++ G + HP++ + +R+V +D+ + + A Sbjct: 929 WDRLRREYDSKGYSVESHPMSVLRTYLHSKSEALREKRFVPYFSSEDLKRMKTKTKVRVA 988 Query: 998 GLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFD 1057 GLV + T +G + TL+D G + +++ + K + + +L + GQV Sbjct: 989 GLVAITQRPPTAKG--MCFITLEDEFGFVNIVIHPEIYQKDRTTIYTRSLLEIHGQVE-- 1044 Query: 1058 DFSGGLKMTAREVMDI 1073 + A ++ + Sbjct: 1045 KVGAITNIRAERILPL 1060 >UniRef50_P74750 Ssp dnaE intein (Fragments) n=29 Tax=Cyanobacteria RepID=DPO3A_SYNY3 Length = 1355 Score = 896 bits (2316), Expect = 0.0, Method: Composition-based stats. Identities = 326/828 (39%), Positives = 484/828 (58%), Gaps = 52/828 (6%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MS FV L +HSDYS++DG ++ L+ +A LGMPA+A+TD + G V+ G Sbjct: 1 MS---FVGLHIHSDYSLLDGASQLPALIDRAIELGMPAIALTDHGVMYGAVELLKVCRGK 57 Query: 61 GIKPIVGADFNVQCDLLGD----ELTHLTVLAANNTGYQNLTLLISKAYQRGYGAA---- 112 IKPI+G + V + H VLA NN GY+NL L + + +G + Sbjct: 58 PIKPIIGNEMYVINGDIEINKRHRRFHQVVLAKNNQGYRNLVKLTTISNLKGIQGSGIFA 117 Query: 113 GPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172 P I+++ L + EGLI+ S G+V +++L+G+ + +Y+ F D Y+LE+ Sbjct: 118 RPCINKELLEQYKEGLIVTSACLGGEVPQAILKGDLDHARQVAKWYKNLFGDDYYLEIQD 177 Query: 173 TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 G ++ V++A+ + +VATND FI +D +AH+ + I G + + KR R Sbjct: 178 HGSVEDRLVNINLVKIAQELDIKIVATNDSHFISCNDVEAHDALLCIQTGKLITEEKRLR 237 Query: 233 NYSPQQYMRSEEEMCELFAD------IPEALANTVEIAKRCNVTVRLGEYFLPQFP-TGD 285 YS +Y++S EEM LF D I A+ANT+E+A + LGE +P +P + Sbjct: 238 -YSGTEYLKSAEEMHLLFRDHLPDDIIETAIANTLEVADKVEAYSILGEPRIPHYPIPPN 296 Query: 286 MSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVM 345 + E Y+ A +GL ERL ER P Y ERLE EL+++ +MGF YFL+V Sbjct: 297 HTPETYVEDIAWDGLLERLKC-----RERADITPVYKERLEYELRMLEKMGFCTYFLVVW 351 Query: 346 EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405 ++I++++D+G+PVGPGRGS AGSLVAY +KIT++DP+ L+FERFLNPER SMPD D D Sbjct: 352 DYIKYARDHGIPVGPGRGSAAGSLVAYCMKITNIDPVHHGLIFERFLNPERKSMPDVDTD 411 Query: 406 FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465 FC+++RD++IE+V YG D V+QIITF M +KAV++DV RVL PY D+++K+IP Sbjct: 412 FCIDRRDEMIEYVTQKYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYAESDKMAKMIPV 471 Query: 466 DPGMTLA-----KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPT 520 G EPQ Y+ + VK IDMA ++EG + G HA GVVI+ Sbjct: 472 SRGKPAKLKVMISDQTPEPQFKARYDNEPWVKKWIDMAIRIEGTNKTFGVHAAGVVISSE 531 Query: 521 KITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNG 580 + PL + +G +TQ+ DVE GL+K DFLGL+ LT + A+E++ + + Sbjct: 532 PLDQIVPLQKNNDGA-VITQYYMEDVEAMGLLKMDFLGLKNLTTLQRAVELVAETKGIEL 590 Query: 581 EPP---------------LDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQP 625 + +P D KK+ +L+ + +FQLES+GMK +++ L+P Sbjct: 591 DLDDLPLQERKALQIRARTGSKKLPDDVKKTHKLLEAGDLEGIFQLESQGMKQIVRDLKP 650 Query: 626 DCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIIL 685 ED+ +++AL+RPGPL +G++ FI+RKHGREEISY QH+ L+P+L TYG+++ Sbjct: 651 SGIEDISSILALYRPGPLDAGLIPIFINRKHGREEISY-----QHKLLEPILNETYGVLV 705 Query: 686 YQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIF 745 YQEQ+M++AQ L+ Y+LG AD+LRRAMGKKK EEM K R+ F +G+ K+G+ + +A +F Sbjct: 706 YQEQIMKMAQDLADYSLGEADLLRRAMGKKKAEEMQKHRAKFVDGSTKHGVPSRIAENLF 765 Query: 746 DLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDN 793 D + KFA Y S V Y L + E +V + D + Sbjct: 766 DQMVKFAEYCL--SFGTEILTVEYGPLPIGKIVSEEINCSVYSVDPEG 811 Score = 352 bits (903), Expect = 6e-95, Method: Composition-based stats. Identities = 127/417 (30%), Positives = 214/417 (51%), Gaps = 28/417 (6%) Query: 752 AGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKI 811 A FNKSHS AYA V+YQT +LKA+YP E+MAA++TA D+ EKV + C +MG+ + Sbjct: 931 AANCFNKSHSTAYAYVTYQTAYLKANYPVEYMAALLTASSDSQEKVEKYRENCQKMGITV 990 Query: 812 LPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARN--KGGYFRELFDLCART 869 PPDIN HF + I++G+ A++ +GEG IE II AR+ + F+ L D C + Sbjct: 991 EPPDINRSQRHFTPLGE-AILFGLSAVRNLGEGAIEQIITARDNSEEKRFKSLADFCTQV 1049 Query: 870 DTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAE 929 D + +NRR +E LIM+GAFD + +R L++ L + A + AK + GQ ++F L Sbjct: 1050 DLRVVNRRAIETLIMAGAFDGVQSNRNQLLHDLELVIAWAQKRAKEKETGQLNIFDSLTA 1109 Query: 930 EPE-----------QIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVG 978 + E S + Q L E+E LG Y++ HP+ + R + Sbjct: 1110 GESIKAKEAANNGFEQEPSAPPVAEFSLQEKLQLEKEHLGFYVSEHPLKSVQRS-ARLLS 1168 Query: 979 GVRLKDMHPTERGKVITAAGLVVAARVMVTKR-GNRIGICTLDDRSGRLEVMLFTDALDK 1037 + L D+ + + ++A ++VA + ++TK+ G + TL+D SG+ E ++F ++ Sbjct: 1169 PINLVDLDQYKVRQKVSAVAILVAVKKIITKKNGQPMAFLTLEDMSGQSEAVVFPSNYER 1228 Query: 1038 YQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQI-DDQ 1096 Q +L + ++ G+V D ++ ++ ++E + + + LT ++I + Sbjct: 1229 LQDVLIEGSQQMIWGKV--DRRDDQYQLIVEDLEPVEEVKM-----VMLDLTPQEIANTS 1281 Query: 1097 LLNRLRQSLEPHRS----GTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGL 1149 RL+Q L+ H IPV + +RFG + V+ + L+ L Sbjct: 1282 TQARLKQILQSHAPQKEQMKIPVVACINEGPTKHFIRFGENYWVNDYGTAVASLQEL 1338 >UniRef50_C5CQX7 DNA polymerase III, alpha subunit n=2 Tax=Comamonadaceae RepID=C5CQX7_VARPS Length = 1118 Score = 895 bits (2313), Expect = 0.0, Method: Composition-based stats. Identities = 290/1135 (25%), Positives = 504/1135 (44%), Gaps = 107/1135 (9%) Query: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA- 60 + P + L S++S G + LV++A LG ALAITD ++ G+V+ + Sbjct: 31 TLPDYAELHCLSNFSFQRGASTPEELVERAYQLGYTALAITDECSVAGIVRAHVCLRDLP 90 Query: 61 --------------------GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLL 100 G + + G++F E L V+A G+ NL Sbjct: 91 AKLEEYEREHPGEPPLPRNPGFRLLFGSEFRF-------ERFRLVVIANGTEGWGNLCEF 143 Query: 101 ISKAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALV--DECVAFY 158 I+ A + + + + L ++ V E + Sbjct: 144 ITAARNTELPKGEYRVSWE-----HSDVASLQDCQVLFVPHREPGAAVDAATLHEDLLAA 198 Query: 159 EEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVA 218 + + +L + D++ + A ++ E G+P+VA DV S H++ A Sbjct: 199 KALYAGNLWLAVEMLNELDDDLWFAALMQAGEQTGVPLVAAGDVHMHARSAKPLHDVLTA 258 Query: 219 IHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE--Y 276 + +G T+ + + ++++R + EL+ +P LANT+ +A+RC + Y Sbjct: 259 VREGKTVAECGFALQSNAERHLRQRVRLAELY--LPRMLANTLVVAERCRFDPEVIRENY 316 Query: 277 FLPQFPTGD-MSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQM 335 P G + + LV++ EG + R PD+ +LE EL +I +M Sbjct: 317 KYPLETVGSSETPAETLVRKTWEGAQVRFPEGIPDK---------VRAQLEKELALIVEM 367 Query: 336 GFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPE 395 + +FL V + +++++ + GRGS A S V Y L IT ++P + LLFERFL+ Sbjct: 368 KYEMFFLTVEDIVRFARSQSIL-CQGRGSSANSAVCYCLGITAINPEKGHLLFERFLSRH 426 Query: 396 RVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGF 455 R PD DVDF ++R++VI+++ YGR+ + A++ +RDVG+ +G Sbjct: 427 RHEPPDIDVDFEHQRREEVIQYIYQKYGRERAAIAAVVICYRARSALRDVGKAMGIDERL 486 Query: 456 VDRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGV 515 +D +K L + + E + ++ I+M R+L+G R+ +H GG Sbjct: 487 IDEFAKDHYWFDDTVLGEQLFKAAARVGVQEDELKLVQWIEMTRRLKGFPRHLSQHVGGF 546 Query: 516 VIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKR 575 V+ T++T P+ V Q++K D+E G++K D L L L+ I L+ +N+ Sbjct: 547 VLTHTRLTRLVPVEKASMKDRSVIQWEKDDLEAMGMLKVDVLALGMLSAIRRGLDHMNRW 606 Query: 576 RAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALV 635 R + + IP DD+K FDM+ ++T VFQ+ESR ++ RL+P C+ED++ V Sbjct: 607 RG----SMVQMHHIPNDDQKVFDMICDADTIGVFQIESRAQMSMLPRLKPRCYEDLVIEV 662 Query: 636 ALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQ 695 A+ RPGP+Q GMV ++ ++ + ++ ++ E LKP LE T GI ++QEQVMQIA Sbjct: 663 AIVRPGPIQGGMVHPYLKQRERVAK--GLEIHYEKEELKPALERTLGIPIFQEQVMQIAM 720 Query: 696 VLSGYTLGGADMLRRAMGK-KKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGY 754 + + +T AD LRRAM K+ + K +G +G AE A IF + F Y Sbjct: 721 IAARFTADEADQLRRAMAAWKRKGGLEKFHHKLVKGMTDHGYKAEFAEAIFKQILGFGDY 780 Query: 755 GFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPP 814 GF +SH+A++AL+ + WLK + PA F+AA++ + LV + R G+++ P Sbjct: 781 GFPESHAASFALLVTVSSWLKNYEPACFLAALLDSQPMGFYSPSQLVQDARRHGVEVRPA 840 Query: 815 DINSGLYHFHV------------------------NDDGEIVYGIGAIKGVGEGPIEAII 850 D+ + + + G+ I + + + ++ Sbjct: 841 DVTCSDIDTTLEARAPDAPRMPPGTDARYADRLGRENQPAVRLGLNRISSLSKEGAKRLL 900 Query: 851 EARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAAD 910 EAR + F DL R + L+ + + L + A L HR + Sbjct: 901 EARAQA-PFTSTEDLALRAE---LDGKDMAALAAADALMSLSGHRRQQVW---------- 946 Query: 911 QHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYL 970 +A Q +L P I + PE + G+ LGL L HP+ Sbjct: 947 -----DATAQRRSPALLKGVP--INEPVLQLPAAPEGEEIVGDYAALGLTLRRHPLALLR 999 Query: 971 KEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVML 1030 + R + + + + G+ + A G+V + T G TL+D +G + V++ Sbjct: 1000 PRLAR-MKLMSAEQLRAQPSGQTVRACGIVKGRQRPGTANGT--IFVTLEDETGNVNVIV 1056 Query: 1031 FTDALDKYQQLLEKDRILIVSGQVSFDDFSGGL--KMTAREVMDIDEAREKYARG 1083 ++ ++ +++ L K +L V G DD SGG + A D+ + A+ Sbjct: 1057 WSHVIEAWREPLLKSHLLAVQGTWQRDDDSGGKVQHLIATGFKDLTPLMGRLAQS 1111 >UniRef50_B8ELP6 DNA polymerase III, alpha subunit n=6 Tax=Alphaproteobacteria RepID=B8ELP6_METSB Length = 1145 Score = 894 bits (2312), Expect = 0.0, Method: Composition-based stats. Identities = 275/1128 (24%), Positives = 481/1128 (42%), Gaps = 99/1128 (8%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVK---FYGAG 57 MS PR+ L +++S + G + LV A ALG+ L I D +L G+V+ F A Sbjct: 1 MS-PRYAELAATTNFSFLRGASHPEELVAAAMALGLAGLGIADRNSLAGVVRAHRFLKAN 59 Query: 58 HGAGIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIID 117 +GA + + Y LT L+++A R + Sbjct: 60 KSPSFHLAIGARLVFCDG-----APDILSYPRDRAAYGRLTRLLTRANARAQKGVSLLRS 114 Query: 118 RDWLIELNEGLILLSGGRMGD----------VGRSLLRGNS--------ALVDECV---- 155 D + ++L + + L N Sbjct: 115 SDLIEAAQGQQLILMPETTWEKGDETRRSRKIHAELHDNNHYKNPVDLLDDAHALAFGQE 174 Query: 156 ----AFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFD 211 E R +L T L + + L+ P++A NDV Sbjct: 175 MPLIEQLREASNGRLWLAAKMTYGVSMRRDLASRIALSRKTNTPLIAVNDVIMHTPERRP 234 Query: 212 AHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTV 271 ++ AI G TLD + +++M+S EM LFA P+A+ T+ + ++ Sbjct: 235 LQDVLSAIRAGQTLDRLGLALEANAERHMKSAAEMARLFAGAPQAMEETLRFLDGLDFSL 294 Query: 272 RLGEYFLPQF-PTGDMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQ 330 P+ G + + L A+EG + R P P + + EL+ Sbjct: 295 DELRGDYPEELREGFETPQAALAFFAREGAKFRFPDGVP---------PSVETAIAHELK 345 Query: 331 VINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFER 390 ++ Q+ + YFL V + +++++ + GRGS A S + Y L +T+++P +LLFER Sbjct: 346 LVEQLDYAPYFLTVHDIVRFARTEKIL-CQGRGSAANSTLCYCLGVTEVNPAFHNLLFER 404 Query: 391 FLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLG 450 F++P+R PD DVDF E+R+QV++++ YGR + + T A++ IR+VG+ G Sbjct: 405 FISPDRNEPPDIDVDFEHERREQVMQYIYARYGRARAALTASVITYRARSAIREVGKAFG 464 Query: 451 HPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGK 510 V +S I ++ E Q + + + +A +L G R+ + Sbjct: 465 LSDDVVSALSATIWGGSSSSVE---AGEAQKAGFDPTEARLAQTLKLAEELIGFPRHLSQ 521 Query: 511 HAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALE 570 H GG VI +++ + P+ ++DK D++ G++K D L L LT + + Sbjct: 522 HTGGFVITRSRLDEVVPIMNAAMEDRTTIEWDKDDLDALGILKIDVLALGMLTCLRKGFD 581 Query: 571 MINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFED 630 +I + + L IA +P + ++M+ R++T VFQ+ESR ++ RL+P F D Sbjct: 582 LIREHYGEE----LTIATLPPEQGAVYEMISRADTIGVFQIESRAQMSMLPRLRPREFYD 637 Query: 631 MIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQV 690 ++ VA+ RPGP+Q MV ++ R+ G E +SYP + L+ VL T G+ L+QEQ Sbjct: 638 LVIEVAIVRPGPIQGDMVHPYLRRRQGLEPVSYPS-----KQLEEVLGKTLGVPLFQEQA 692 Query: 691 MQIAQVLSGYTLGGADMLRRAMG-KKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVE 749 M+IA V +G+T AD LRRAM K + R+ EG + + A + F +E Sbjct: 693 MKIAIVAAGFTPSEADQLRRAMATFKHVGTIGAFRAKMIEGMVARDYSRDFAERCFKQIE 752 Query: 750 KFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGL 809 F YGF +SH+A++AL+ Y + W+K YP F A++ A ++ + G+ Sbjct: 753 GFGSYGFPESHAASFALLVYASAWMKCRYPDAFACALLNAQPMGFYAPAQILRDAREHGV 812 Query: 810 KILPPDINSGLYHFHVND--------------DGEIV------YGIGAIKGVGEGPIEAI 849 + D+N + + GEI G IKG E + Sbjct: 813 GVEEVDVNFSHWDSTLTPAAERRPPHPRHASMQGEIFATCGISLGFRQIKGFAEHDATQL 872 Query: 850 IEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAA 909 + R++G + + DL R L+ V+E L + AF LG R + ++ +A Sbjct: 873 VAMRDRG--YDSIRDLWLRA---GLSLAVMELLAGADAFRSLGLDRREALWAVRGLNRAG 927 Query: 910 DQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQY 969 D+ D +L + + ++ A P + + L L L HP++ Sbjct: 928 DK----------DDLPLLKDLSWRATEAEAKLPPMLLGEHVVEDYRRLSLSLKAHPVSFL 977 Query: 970 LKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVM 1029 + + + +R D+ G IT AGLV+ + T G + T++D +G + Sbjct: 978 RERLTQKR-ILRADDLKNQPAGSRITVAGLVLVRQRPGTASG--VIFLTIEDETGIANAI 1034 Query: 1030 LFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077 ++ ++ ++++ R L V+G++ + S + + D+ Sbjct: 1035 VWPKIFERLRRIVIGARFLAVTGRLQKE--SDVIHVVMERAEDLSPLL 1080 >UniRef50_B2SI43 Error-prone DNA polymerase n=31 Tax=Gammaproteobacteria RepID=DNAE2_XANOP Length = 1083 Score = 892 bits (2306), Expect = 0.0, Method: Composition-based stats. Identities = 269/1096 (24%), Positives = 486/1096 (44%), Gaps = 85/1096 (7%) Query: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 P + L SD+S + G + L +A G ALAITD +L G+V+ A G++ Sbjct: 46 PTYAELHCLSDFSFLRGASSAEQLFARAQHCGYSALAITDECSLAGIVRGLEASRVTGVR 105 Query: 64 PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIE 123 IVG++F + + T +L N GY + L++ A + A + D + Sbjct: 106 LIVGSEFTL------IDGTRFVLLVENAHGYPQVCGLVTTARRAASKGAYRLGRADVEAQ 159 Query: 124 LNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLH 183 + ++ G V L G ++ + ++ F +R FL + D+ + L Sbjct: 160 FRD----VAPG----VFALWLPGVQPQAEQGA-WLQQVFGERAFLAVELHREQDDGARLQ 210 Query: 184 AAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSE 243 LA+ G+ VA+ DV + + AI L + + ++++R+ Sbjct: 211 VLQALAQQLGMTAVASGDVHMAQRRERIVQDTLTAIRHTLPLAECGAHLFRNGERHLRTR 270 Query: 244 EEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMST-EDYLVKRAKEGLEE 302 + ++ D A V +A+RC + Y P+ + T YL + + G+ + Sbjct: 271 RALGNIYPDALLQAA--VALAQRCTFDISKISYTYPRELVPEGHTPTSYLRQLTEAGIRK 328 Query: 303 RLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGR 362 R + E +E EL +I + +FL V + ++++++ + GR Sbjct: 329 RWPGGI---------TAKVREDIEKELALIALKKYEAFFLTVQDVVRFAREQNIL-CQGR 378 Query: 363 GSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMY 422 GS A S V YAL IT ++P E LL RFL+ +R PD DVDF E+R++V+++V Y Sbjct: 379 GSSANSAVCYALGITAVNPDETRLLMARFLSEKRDEPPDIDVDFEHERREEVLQYVYRKY 438 Query: 423 GRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLP 482 GR+ + T K+ +RDV + G P + ++ G T E + Sbjct: 439 GRERAALAATVICYRGKSAVRDVAKAFGLPPDQIALLANCYGWGNGETP---MEQRIEEA 495 Query: 483 EIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFD 542 A+ + ++ + L R+ +H GG VI+ ++ P+ + Q+D Sbjct: 496 GFDLANPLINKILLVTEHLRDHPRHLSQHVGGFVISDEPLSLLVPVENAAMADRTIIQWD 555 Query: 543 KSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQR 602 K D+E L+K D L L LT I L+++ R ++ A +P +D ++ M+QR Sbjct: 556 KDDLETMKLLKVDCLALGMLTCIRKTLDLVRGHRGRDYSI----ATLPGEDLPTYKMIQR 611 Query: 603 SETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEIS 662 ++T VFQ+ESR ++ RL+P F D++ VA+ RPGP+Q MV ++ R+ GRE++S Sbjct: 612 ADTVGVFQIESRAQMAMLPRLKPAEFYDLVIEVAIVRPGPIQGDMVHPYLRRRQGREDVS 671 Query: 663 YPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK-KKPEEMA 721 YP +++ +L+PT G+ L+QEQVM++ + YT AD LRR+M ++ +M Sbjct: 672 YPS-----PAVEDILKPTLGVPLFQEQVMELLMHAADYTESEADNLRRSMAAWRRGGDME 726 Query: 722 KQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAE 781 + R+ E + G + +IF+ ++ F YGF +SH+A++A + Y + WLK H PA Sbjct: 727 QHRTRVRERMQGKGYASTFIDQIFEQIKGFGSYGFPQSHAASFAKLVYASCWLKRHEPAA 786 Query: 782 FMAAVMTADMDNTEKVVGLVDECW-----RMGLKILPPDINSGLYHFHVN---------- 826 F ++ A +V + R +++LP D+ + + Sbjct: 787 FACGLLNAQPMGFYSASQIVQDARRGSPERERVEVLPVDVVHSDWDNTLVGGRPWRSAAD 846 Query: 827 --DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884 + I G+ + G+ + + I+ AR + F ++ DLC R L+ + L Sbjct: 847 PGEQPAIRLGMRQVAGLSDVVAQRIVAARTQR-AFADIGDLCLRA---ALDEKARLALAE 902 Query: 885 SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944 +GA + +R A ++ P E+ + + Sbjct: 903 AGALQGMVGNRNAARWAMAGVEAR------------------RPLLPGSPEERPVAFEAP 944 Query: 945 PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004 + + ++GL L HP+ ++ R + L+D+ G + AGLV + Sbjct: 945 HAGEEILADYRSVGLSLRQHPMALLRPQM-RQRRILGLRDLQGRPHGSGVHVAGLVTQRQ 1003 Query: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLK 1064 T +G TL+D G + V++++ + ++ L + R+L V G+ G Sbjct: 1004 RPATAKGT--IFVTLEDEHGMINVIVWSHLALRRRRALLESRLLAVRGRWER--VDGVEH 1059 Query: 1065 MTAREVMDIDEAREKY 1080 + A ++ D+ + Sbjct: 1060 LIAGDLHDLSDLLGDM 1075 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.313 0.153 0.437 Lambda K H 0.267 0.0469 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 7,398,913,797 Number of Sequences: 3077464 Number of extensions: 358859920 Number of successful extensions: 981702 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 1853 Number of HSP's successfully gapped in prelim test: 848 Number of HSP's that attempted gapping in prelim test: 962354 Number of HSP's gapped (non-prelim): 4568 length of query: 1160 length of database: 1,040,396,356 effective HSP length: 140 effective length of query: 1020 effective length of database: 609,551,396 effective search space: 621742423920 effective search space used: 621742423920 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 99 (42.5 bits)