BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (629 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0A9P7 Cold-shock DEAD box protein A n=201 Tax=Bacteria... 1261 0.0 UniRef50_P44586 Cold-shock DEAD box protein A homolog n=29 Tax=P... 747 0.0 UniRef50_Q8D2Y1 DeaD protein n=2 Tax=Enterobacteriaceae RepID=Q8... 652 0.0 UniRef50_Q3IJ60 ATP-dependent RNA helicase, cold shock protein A... 616 e-175 UniRef50_Q1MY97 DEAD/DEAH box helicase-like protein n=1 Tax=Berm... 570 e-161 UniRef50_Q5NZY2 ATP-dependent RNA helicase DeaD n=12 Tax=Bacteri... 564 e-159 UniRef50_C5S7U5 DEAD/DEAH box helicase domain protein n=1 Tax=Al... 556 e-156 UniRef50_B4SPP3 DEAD/DEAH box helicase domain protein n=16 Tax=c... 548 e-154 UniRef50_A6T3R2 ATP-dependent RNA helicase n=86 Tax=Bacteria Rep... 536 e-151 UniRef50_A4C3X3 RNA helicase DeaD n=3 Tax=Alteromonadales RepID=... 533 e-150 UniRef50_C7HXF4 DEAD/DEAH box helicase domain protein n=3 Tax=Ba... 529 e-148 UniRef50_C9RIQ5 DEAD/DEAH box helicase domain protein n=1 Tax=Fi... 519 e-145 UniRef50_B1VFV5 ATP-dependent RNA helicase n=35 Tax=cellular org... 519 e-145 UniRef50_C0Q9A4 DeaD n=1 Tax=Desulfobacterium autotrophicum HRM2... 514 e-144 UniRef50_C4LJP9 ATP-dependent RNA helicase n=15 Tax=Bacteria Rep... 514 e-144 UniRef50_Q7UG20 ATP-dependent RNA helicase n=2 Tax=Bacteria RepI... 512 e-143 UniRef50_D2NRF7 Superfamily II DNA and RNA helicase n=3 Tax=Bact... 511 e-143 UniRef50_A4BET4 DEAD/DEAH box helicase-like protein n=1 Tax=Rein... 506 e-142 UniRef50_Q484Q1 RNA helicase DeaD n=1 Tax=Colwellia psychrerythr... 495 e-138 UniRef50_B0U160 DEAD-box subfamily ATP-dependent helicase n=18 T... 494 e-138 UniRef50_A5CVQ6 ATP-dependent RNA helicase DeaD n=2 Tax=sulfur-o... 488 e-136 UniRef50_Q5ZT20 ATP-dependent RNA helicase n=4 Tax=Legionella pn... 485 e-135 UniRef50_A0Z0M4 ATP-dependent RNA helicase n=1 Tax=marine gamma ... 484 e-135 UniRef50_Q11039 Cold-shock DEAD box protein A homolog n=27 Tax=B... 476 e-132 UniRef50_B7VSB7 ATP-dependent RNA helicase n=74 Tax=Gammaproteob... 464 e-129 UniRef50_B9ZPI5 DEAD/DEAH box helicase domain protein n=2 Tax=Ba... 458 e-127 UniRef50_Q1QYG3 DEAD/DEAH box helicase-like protein n=1 Tax=Chro... 456 e-126 UniRef50_C7MCD0 DNA/RNA helicase, superfamily II n=2 Tax=Actinom... 454 e-126 UniRef50_Q48FQ8 ATP-dependent RNA helicase, DEAD box family n=23... 451 e-125 UniRef50_Q3AX69 DEAD/DEAH box helicase-like n=18 Tax=cellular or... 439 e-121 UniRef50_Q31AC4 DEAD/DEAH box helicase-like protein n=9 Tax=Proc... 438 e-121 UniRef50_A9ENG9 ATP-independent RNA helicase n=18 Tax=Bacteria R... 427 e-118 UniRef50_C0W1P0 Superfamily II helicase n=2 Tax=Actinomyces RepI... 424 e-117 UniRef50_D1BSR4 DEAD/DEAH box helicase domain protein n=5 Tax=Ac... 423 e-116 UniRef50_B8J1L5 DEAD/DEAH box helicase domain protein n=3 Tax=Ba... 423 e-116 UniRef50_Q6AMK6 Probable ATP-dependent RNA helicase n=1 Tax=Desu... 411 e-113 UniRef50_A2SQE1 DEAD/DEAH box helicase domain protein n=17 Tax=c... 410 e-112 UniRef50_D0WN23 ATP-dependent RNA helicase DeaD n=1 Tax=Actinomy... 409 e-112 UniRef50_Q81IT9 DEAD-box ATP-dependent RNA helicase cshA n=84 Ta... 406 e-111 UniRef50_C5RIK3 DEAD/DEAH box helicase domain protein n=3 Tax=Cl... 401 e-110 UniRef50_B0TII3 Dead/deah box helicase n=18 Tax=Bacteria RepID=B... 399 e-109 UniRef50_D2RJY3 DEAD/DEAH box helicase domain protein n=2 Tax=Fi... 398 e-109 UniRef50_C5EJJ1 DEAD/DEAH box helicase domain-containing protein... 398 e-109 UniRef50_C5C5R9 DEAD/DEAH box helicase domain protein n=1 Tax=Be... 397 e-109 UniRef50_C8WWM6 DEAD/DEAH box helicase domain protein n=1 Tax=Al... 396 e-108 UniRef50_C6VX00 DEAD/DEAH box helicase domain protein n=1 Tax=Dy... 396 e-108 UniRef50_D2QD85 DEAD/DEAH box helicase domain protein n=1 Tax=Sp... 395 e-108 UniRef50_Q725W5 ATP-dependent RNA helicase, DEAD/DEAH family n=3... 390 e-107 UniRef50_Q7NHM7 Gll2508 protein n=1 Tax=Gloeobacter violaceus Re... 389 e-106 UniRef50_D2LSA7 DEAD/DEAH box helicase domain protein n=1 Tax=Ba... 381 e-104 UniRef50_B0P7Y4 Putative uncharacterized protein n=1 Tax=Anaerot... 381 e-104 UniRef50_C5CGQ2 DEAD/DEAH box helicase domain protein n=1 Tax=Ko... 374 e-102 UniRef50_Q5L3G9 DEAD-box ATP-dependent RNA helicase cshA n=94 Ta... 372 e-101 UniRef50_Q65N62 DEAD-box ATP-dependent RNA helicase cshA n=135 T... 370 e-101 UniRef50_Q11UP8 ATP-dependent RNA helicase (Cold-shock DEAD-box ... 369 e-100 UniRef50_C0EAN9 Putative uncharacterized protein n=1 Tax=Clostri... 369 e-100 UniRef50_A6M3F5 DEAD/DEAH box helicase domain protein n=5 Tax=Cl... 368 e-100 UniRef50_UPI00016C471F RNA helicase DeaD n=1 Tax=Gemmata obscuri... 367 e-100 UniRef50_Q0AVQ9 ATP-dependent RNA helicase n=1 Tax=Syntrophomona... 365 2e-99 UniRef50_C8P265 DEAD/DEAH family ATP-dependent RNA helicase n=1 ... 364 6e-99 UniRef50_Q2FKY7 DEAD/DEAH box helicase-like n=1 Tax=Methanospiri... 364 7e-99 UniRef50_Q2NEZ7 Predicted helicase n=20 Tax=cellular organisms R... 363 2e-98 UniRef50_A8SKI7 Putative uncharacterized protein n=1 Tax=Parvimo... 362 2e-98 UniRef50_C1IBN1 DEAD-box ATP dependent DNA helicase n=1 Tax=Clos... 360 6e-98 UniRef50_UPI0001C33831 DNA/RNA helicase, superfamily II n=3 Tax=... 360 8e-98 UniRef50_C0AEG7 DEAD/DEAH box helicase domain protein (Fragment)... 358 2e-97 UniRef50_Q0ST49 ATP-dependent RNA helicase, DEAD/DEAH box family... 358 3e-97 UniRef50_B1ZXI6 DEAD/DEAH box helicase domain protein n=3 Tax=Ve... 358 3e-97 UniRef50_A6VJ89 DEAD/DEAH box helicase domain protein n=5 Tax=Eu... 357 6e-97 UniRef50_A9NFC3 DEAD box ATP-dependent RNA helicase n=1 Tax=Acho... 357 6e-97 UniRef50_Q04VV9 ATP-dependent RNA helicase (Superfamily II) n=4 ... 354 5e-96 UniRef50_B9Y818 Putative uncharacterized protein n=1 Tax=Holdema... 350 7e-95 UniRef50_A6KZW9 ATP-dependent RNA helicase n=51 Tax=Bacteria Rep... 348 4e-94 UniRef50_A8REA9 Putative uncharacterized protein n=1 Tax=Eubacte... 347 5e-94 UniRef50_A5FH88 DEAD/DEAH box helicase domain protein n=21 Tax=B... 344 6e-93 UniRef50_C0ZI64 Putative ATP-dependent RNA helicase n=1 Tax=Brev... 343 1e-92 UniRef50_Q3AFI3 ATP-dependent RNA helicase, DEAD box family n=1 ... 342 2e-92 UniRef50_Q8YXJ0 ATP-dependent RNA helicase n=24 Tax=Cyanobacteri... 342 3e-92 UniRef50_D0LYA3 DEAD/DEAH box helicase domain protein n=1 Tax=Ha... 341 4e-92 UniRef50_UPI0001C311D7 DEAD/DEAH box helicase domain protein n=1... 341 4e-92 UniRef50_B1V958 DEAD/DEAH box helicase-like n=4 Tax=Candidatus P... 340 1e-91 UniRef50_B2UNH8 DEAD/DEAH box helicase domain protein n=1 Tax=Ak... 339 2e-91 UniRef50_B0SU57 ATP-dependent RNA helicase, DEAD-box family (Dea... 339 2e-91 UniRef50_D2LXV0 DEAD/DEAH box helicase domain protein n=1 Tax=Ba... 338 2e-91 UniRef50_Q26CN9 ATP-dependent RNA helicase n=2 Tax=cellular orga... 338 3e-91 UniRef50_C6X450 Cold-shock DEAD-box protein A n=1 Tax=Flavobacte... 338 5e-91 UniRef50_Q0W8H7 ATP-dependent RNA helicase n=1 Tax=uncultured me... 337 6e-91 UniRef50_Q5HME0 Probable DEAD-box ATP-dependent RNA helicase SER... 337 1e-90 UniRef50_C0YHR5 ATP-dependent RNA helicase n=1 Tax=Chryseobacter... 336 2e-90 UniRef50_A4C1L2 ATP-dependent RNA helicase n=2 Tax=Polaribacter ... 335 5e-90 UniRef50_C5PZD1 ATP-dependent RNA helicase n=5 Tax=Bacillales Re... 334 5e-90 UniRef50_Q30PP0 DEAD/DEAH box helicase-like protein n=11 Tax=Bac... 333 2e-89 UniRef50_B6YWR7 DEAD/DEAH box RNA helicase n=3 Tax=Thermococcus ... 333 2e-89 UniRef50_B8I5B1 DEAD/DEAH box helicase domain protein n=2 Tax=Cl... 330 1e-88 UniRef50_Q2BDP3 ATP-dependent RNA helicase n=2 Tax=Bacillus RepI... 329 2e-88 UniRef50_B8FMI0 DEAD/DEAH box helicase domain protein n=1 Tax=De... 329 2e-88 UniRef50_C6CYC6 DEAD/DEAH box helicase domain protein n=89 Tax=F... 329 2e-88 UniRef50_D1Y000 ATP-dependent RNA helicase DeaD family protein n... 325 4e-87 UniRef50_C5SI45 DEAD/DEAH box helicase domain protein n=1 Tax=As... 324 5e-87 UniRef50_B4WCQ8 DEAD/DEAH box helicase domain protein n=1 Tax=Br... 324 7e-87 UniRef50_D1B4W7 DEAD/DEAH box helicase domain protein n=2 Tax=Ba... 323 9e-87 UniRef50_O26305 ATP-dependent RNA helicase, eIF-4A family n=1 Ta... 323 1e-86 UniRef50_A6TTG0 DEAD/DEAH box helicase domain protein n=28 Tax=F... 322 3e-86 UniRef50_C7RHZ9 DEAD/DEAH box helicase domain protein n=3 Tax=An... 321 5e-86 UniRef50_A9BJS7 DEAD/DEAH box helicase domain protein n=2 Tax=ce... 321 6e-86 UniRef50_D0JAM0 ATP-dependent RNA helicase n=2 Tax=Blattabacteri... 321 7e-86 UniRef50_C6BZ63 DEAD/DEAH box helicase domain protein n=1 Tax=De... 320 7e-86 UniRef50_C6XMJ7 DEAD/DEAH box helicase domain protein n=23 Tax=B... 320 9e-86 UniRef50_B2V9H9 DEAD/DEAH box helicase domain protein n=4 Tax=Hy... 320 1e-85 UniRef50_A9A5S3 DEAD/DEAH box helicase domain protein n=5 Tax=Th... 320 1e-85 UniRef50_A6DIU5 Probable ATP dependent RNA helicase n=1 Tax=Lent... 320 1e-85 UniRef50_Q46G62 ATP-dependent RNA helicase n=7 Tax=cellular orga... 318 4e-85 UniRef50_D1N203 DEAD/DEAH box helicase domain protein n=1 Tax=Vi... 318 5e-85 UniRef50_P42305 ATP-dependent RNA helicase dbpA n=99 Tax=Firmicu... 317 8e-85 UniRef50_C7NBE3 DEAD/DEAH box helicase domain protein n=3 Tax=Le... 317 8e-85 UniRef50_D2QWU0 DEAD/DEAH box helicase domain protein n=1 Tax=Pi... 317 8e-85 UniRef50_Q2LY23 Superfamily II DNA and RNA helicases n=2 Tax=Bac... 316 2e-84 UniRef50_Q6MN50 ATP-dependent RNA helicase n=1 Tax=Bdellovibrio ... 313 1e-83 UniRef50_C4ZJL9 DEAD/DEAH box helicase domain protein n=1 Tax=Th... 312 2e-83 UniRef50_Q1J0S9 DEAD/DEAH box helicase-like protein n=2 Tax=Dein... 311 6e-83 UniRef50_Q126W4 DEAD/DEAH box helicase-like n=153 Tax=Bacteria R... 310 1e-82 UniRef50_C8PQM8 DEAD/DEAH box helicase n=1 Tax=Treponema vincent... 310 1e-82 UniRef50_C1I2P2 ATP-dependent RNA helicase DeaD n=1 Tax=Clostrid... 310 1e-82 UniRef50_Q17W71 ATP-dependent RNA helicase n=19 Tax=Helicobacter... 309 2e-82 UniRef50_A3EUK2 Putative ATP-dependent helicase n=2 Tax=Leptospi... 309 3e-82 UniRef50_C8WFI7 DEAD/DEAH box helicase domain protein n=3 Tax=Zy... 308 3e-82 UniRef50_Q3SF48 DEAD/DEAH box helicase n=7 Tax=cellular organism... 308 4e-82 UniRef50_A5UZK3 DEAD/DEAH box helicase domain protein n=8 Tax=Ba... 307 9e-82 UniRef50_D1BXK2 DEAD/DEAH box helicase domain protein n=6 Tax=Ac... 307 9e-82 UniRef50_C9KJK1 ATP-dependent RNA helicase DeaD n=3 Tax=Veillone... 306 2e-81 UniRef50_C6WW85 DEAD/DEAH box helicase domain protein n=1 Tax=Me... 305 3e-81 UniRef50_B7IA63 DEAD/DEAH box helicase n=17 Tax=Acinetobacter Re... 305 5e-81 UniRef50_C1CWT4 Putative DEAD-box ATP-dependent RNA helicase 3 n... 304 6e-81 UniRef50_D2B0M6 Putative uncharacterized protein n=1 Tax=Strepto... 304 7e-81 UniRef50_B8ILJ8 DEAD/DEAH box helicase domain protein n=10 Tax=A... 304 7e-81 UniRef50_Q0G0P8 Superfamily II DNA and RNA helicase n=1 Tax=Fulv... 304 8e-81 UniRef50_C4G990 Putative uncharacterized protein n=1 Tax=Shuttle... 303 1e-80 UniRef50_C4V5M7 DEAD/DEAH box helicase domain protein n=1 Tax=Se... 303 1e-80 UniRef50_D2MPZ3 Putative ATP-dependent RNA helicase RhlE n=1 Tax... 303 1e-80 UniRef50_D2QY81 DEAD/DEAH box helicase domain protein n=1 Tax=Pi... 303 1e-80 UniRef50_A7HKQ8 DEAD/DEAH box helicase domain protein n=1 Tax=Fe... 303 2e-80 UniRef50_Q480Z7 ATP-dependent RNA helicase, DEAD box family n=2 ... 303 2e-80 UniRef50_D0MH79 DEAD/DEAH box helicase domain protein n=1 Tax=Rh... 303 2e-80 UniRef50_A7K2L3 ATP-dependent RNA helicase n=17 Tax=Vibrionaceae... 303 2e-80 UniRef50_Q4FSS4 Possible ATP-dependent DEAD/DEAH box RNA-helicas... 301 3e-80 UniRef50_Q2RQT0 DEAD/DEAH box helicase n=59 Tax=root RepID=Q2RQT... 301 4e-80 UniRef50_Q82T78 RhlE; ATP-dependent RNA helicase RhlE n=1 Tax=Ni... 301 5e-80 UniRef50_D1U888 DEAD/DEAH box helicase domain protein n=1 Tax=De... 301 5e-80 UniRef50_B1V1Y2 ATP-dependent RNA helicase DbpA n=2 Tax=Clostrid... 301 6e-80 UniRef50_Q7UJ92 Putative ATP-dependent RNA helicase rhlE n=1 Tax... 301 6e-80 UniRef50_A8TFK3 DEAD/DEAH box helicase domain protein n=1 Tax=Me... 301 7e-80 UniRef50_A6LUG3 DEAD/DEAH box helicase domain protein n=33 Tax=F... 300 9e-80 UniRef50_C5CU85 DEAD/DEAH box helicase domain protein n=10 Tax=C... 300 1e-79 UniRef50_UPI00016C0D94 ATP-dependent RNA helicase n=1 Tax=Epulop... 300 1e-79 UniRef50_C2ME86 ATP-dependent RNA helicase, dead/deah box family... 300 1e-79 UniRef50_C6WM51 DEAD/DEAH box helicase domain protein n=83 Tax=A... 300 1e-79 UniRef50_Q0K893 ATP-dependent RNA helicase n=129 Tax=Proteobacte... 300 1e-79 UniRef50_A6NSW7 Putative uncharacterized protein n=1 Tax=Bactero... 299 2e-79 UniRef50_B5EAF1 DEAD/DEAH box helicase domain protein n=3 Tax=De... 299 2e-79 UniRef50_A9GRX1 DeaD2 protein n=5 Tax=Bacteria RepID=A9GRX1_SORC5 299 2e-79 UniRef50_A7IK90 DEAD/DEAH box helicase domain protein n=36 Tax=A... 299 2e-79 UniRef50_B1CAG5 Putative uncharacterized protein n=1 Tax=Anaerof... 298 3e-79 UniRef50_C7LPU2 DEAD/DEAH box helicase domain protein n=1 Tax=De... 298 3e-79 UniRef50_Q14NT1 Putative atp-dependent rna helicase protein n=1 ... 298 5e-79 UniRef50_Q2SZW4 ATP-dependent RNA helicase RhlE n=104 Tax=Proteo... 297 7e-79 UniRef50_Q28T45 DEAD/DEAH box helicase-like protein n=18 Tax=Alp... 297 7e-79 UniRef50_B5ZGC1 DEAD/DEAH box helicase domain protein n=3 Tax=Ac... 297 8e-79 UniRef50_C7JBN9 DNA/RNA helicase n=19 Tax=cellular organisms Rep... 297 8e-79 UniRef50_A0JYP4 DEAD/DEAH box helicase domain protein n=14 Tax=A... 297 9e-79 UniRef50_C5CB97 DNA/RNA helicase, superfamily II n=23 Tax=Bacter... 297 9e-79 UniRef50_Q0BSI7 ATP-dependent RNA helicase n=54 Tax=Alphaproteob... 297 9e-79 UniRef50_B2S409 ATP-dependent RNA helicase n=3 Tax=Treponema Rep... 296 1e-78 UniRef50_B6BTD3 Dead/deah box helicase domain protein n=1 Tax=be... 296 1e-78 UniRef50_C6C1F3 DEAD/DEAH box helicase domain protein n=2 Tax=De... 296 1e-78 UniRef50_A8IAJ3 Helicase n=4 Tax=Alphaproteobacteria RepID=A8IAJ... 296 2e-78 UniRef50_Q1CXY8 ATP-independent RNA helicase DbpA n=3 Tax=Deltap... 295 3e-78 UniRef50_Q0AFH3 DEAD/DEAH box helicase domain protein n=1 Tax=Ni... 295 3e-78 UniRef50_Q98RE0 ATP-DEPENDENT RNA HELICASE n=1 Tax=Mycoplasma pu... 295 3e-78 UniRef50_B8FPB9 DEAD/DEAH box helicase domain protein n=12 Tax=B... 295 3e-78 UniRef50_A7HDE9 DEAD/DEAH box helicase domain protein n=1 Tax=An... 295 4e-78 UniRef50_C8P164 ATP-dependent RNA helicase DbpA n=1 Tax=Erysipel... 295 4e-78 UniRef50_C6HUU6 Putative ATP-dependent helicase n=1 Tax=Leptospi... 295 5e-78 UniRef50_A9GSG9 Family membership n=1 Tax=Sorangium cellulosum '... 295 5e-78 UniRef50_Q0HYG8 DEAD/DEAH box helicase domain protein n=78 Tax=B... 294 6e-78 UniRef50_B0SYC6 DEAD/DEAH box helicase domain protein n=33 Tax=A... 294 8e-78 UniRef50_B0TQ71 DEAD/DEAH box helicase domain protein n=31 Tax=G... 293 1e-77 UniRef50_A3ZWP8 ATP-dependent RNA helicase n=1 Tax=Blastopirellu... 293 1e-77 UniRef50_B2UL73 DEAD/DEAH box helicase domain protein n=1 Tax=Ak... 293 1e-77 UniRef50_B0SEU1 Superfamily II DNA and RNA helicase n=5 Tax=cell... 293 2e-77 UniRef50_A8L2H9 DEAD/DEAH box helicase domain protein n=2 Tax=Fr... 293 2e-77 UniRef50_A4X1W4 DEAD/DEAH box helicase domain protein n=4 Tax=Ac... 293 2e-77 UniRef50_C8WL27 DEAD/DEAH box helicase domain protein n=3 Tax=Eg... 293 2e-77 UniRef50_A5G1U8 DEAD/DEAH box helicase domain protein n=7 Tax=Al... 293 2e-77 UniRef50_A3WBD4 DNA and RNA helicase n=1 Tax=Erythrobacter sp. N... 292 2e-77 UniRef50_B7VQT9 ATP-dependent RNA helicase n=15 Tax=Bacteria Rep... 292 3e-77 UniRef50_Q58083 Probable ATP-dependent RNA helicase MJ0669 n=29 ... 292 3e-77 UniRef50_Q30SZ2 DEAD/DEAH box helicase-like protein n=2 Tax=Camp... 292 3e-77 UniRef50_C4XQY7 ATP-dependent RNA helicase n=7 Tax=Deltaproteoba... 291 5e-77 UniRef50_Q7UNV7 ATP-dependent RNA helicase n=3 Tax=Planctomyceta... 291 5e-77 UniRef50_D2L498 DEAD/DEAH box helicase domain protein n=1 Tax=De... 291 6e-77 UniRef50_UPI00016C5336 ATP-dependent RNA helicase n=1 Tax=Gemmat... 291 6e-77 UniRef50_C6Q9Z2 DEAD/DEAH box helicase domain protein n=1 Tax=Hy... 291 7e-77 UniRef50_C8PWG8 Cold-shock DEAD box protein A homolog n=1 Tax=En... 291 7e-77 UniRef50_P25888 ATP-dependent RNA helicase rhlE n=363 Tax=root R... 291 7e-77 UniRef50_C1D891 Putative ATP-dependent RNA helicase protein n=1 ... 291 8e-77 UniRef50_D2PLC1 DEAD/DEAH box helicase domain protein n=1 Tax=Kr... 290 9e-77 UniRef50_D2QGG1 DEAD/DEAH box helicase domain protein n=2 Tax=Ba... 290 1e-76 UniRef50_Q6A841 Putative ATP-dependent RNA helicase n=2 Tax=Prop... 290 1e-76 UniRef50_A9KIB7 DEAD/DEAH box helicase domain protein n=1 Tax=Cl... 290 1e-76 UniRef50_D2RII4 DEAD/DEAH box helicase domain protein n=2 Tax=Ac... 290 1e-76 UniRef50_A7K1S7 ATP-dependent RNA helicase n=13 Tax=Vibrionales ... 290 2e-76 UniRef50_C6ATS7 DEAD/DEAH box helicase domain protein n=15 Tax=A... 290 2e-76 UniRef50_B8J3P1 DEAD/DEAH box helicase domain protein n=3 Tax=De... 290 2e-76 UniRef50_D1B384 DEAD/DEAH box helicase domain protein n=1 Tax=Su... 289 3e-76 UniRef50_C1I992 DEAD/DEAH box helicase domain-containing protein... 288 5e-76 UniRef50_C7H231 ATP-dependent RNA helicase DeaD n=4 Tax=Ruminoco... 286 1e-75 UniRef50_C1D673 RhlE3 n=1 Tax=Laribacter hongkongensis HLHK9 Rep... 286 2e-75 UniRef50_D1BLQ6 DEAD/DEAH box helicase domain protein n=3 Tax=Ve... 286 2e-75 UniRef50_A8H2J8 DEAD/DEAH box helicase domain protein n=34 Tax=G... 286 2e-75 UniRef50_B6R5V0 ATP-dependent rna helicase, dead/deah box family... 286 2e-75 UniRef50_D2LUR2 DEAD/DEAH box helicase domain protein n=3 Tax=Ba... 285 3e-75 UniRef50_A0RP33 Putative ATP-dependent RNA helicase RhlE n=2 Tax... 285 3e-75 UniRef50_C7PD17 DEAD/DEAH box helicase domain protein n=139 Tax=... 285 4e-75 UniRef50_C5TNR4 Dead/deah box helicase n=8 Tax=Neisseriaceae Rep... 285 5e-75 UniRef50_Q12QV2 DEAD/DEAH box helicase-like protein n=27 Tax=Gam... 285 5e-75 UniRef50_A9NFK0 ATP-dependent RNA helicase, superfamily II n=1 T... 284 6e-75 UniRef50_A9M0D7 ATP-dependent RNA helicase, putative n=21 Tax=Ne... 284 6e-75 UniRef50_A6LBU1 ATP-dependent RNA helicase n=29 Tax=Bacteroidale... 284 9e-75 UniRef50_B8JG82 DEAD/DEAH box helicase domain protein n=8 Tax=Ba... 283 1e-74 UniRef50_B5JNP6 DEAD/DEAH box helicase domain protein n=1 Tax=Ve... 283 2e-74 UniRef50_Q2BP56 Putative ATP-dependent RNA helicase n=1 Tax=Nept... 283 2e-74 UniRef50_A9V2S5 Predicted protein n=2 Tax=Eukaryota RepID=A9V2S5... 282 2e-74 UniRef50_B3QTY3 DEAD/DEAH box helicase domain protein n=1 Tax=Ch... 282 2e-74 UniRef50_C3RH47 ATP-dependent RNA helicase RhlE n=2 Tax=Bacteria... 281 4e-74 UniRef50_A1B2U6 DEAD/DEAH box helicase domain protein n=23 Tax=R... 281 4e-74 UniRef50_Q1D015 ATP-dependent helicase, DEAD/DEAH-box family n=6... 281 4e-74 UniRef50_D1B113 DEAD/DEAH box helicase domain protein n=1 Tax=Su... 281 5e-74 UniRef50_B5ESS9 Dead/deah box heliCase domain/helicase conserved... 281 5e-74 UniRef50_A9KIC2 DEAD/DEAH box helicase domain protein n=5 Tax=Fi... 281 5e-74 UniRef50_B5IG60 DEAD/DEAH box helicase domain protein n=2 Tax=Ac... 281 6e-74 UniRef50_B6IS62 DEAD/DEAH box helicase protein n=1 Tax=Rhodospir... 280 9e-74 UniRef50_A5FST0 DEAD/DEAH box helicase domain protein n=5 Tax=De... 280 1e-73 UniRef50_C1AE59 ATP-dependent RNA helicase RhlE n=1 Tax=Gemmatim... 280 2e-73 UniRef50_UPI0000E87E35 putative ATP-dependent RNA helicase prote... 279 2e-73 UniRef50_Q485D3 ATP-dependent RNA helicase, DEAD box family n=24... 279 2e-73 UniRef50_Q2BMZ1 ATP-dependent RNA helicase n=1 Tax=Neptuniibacte... 279 2e-73 UniRef50_P21693 ATP-independent RNA helicase dbpA n=380 Tax=cell... 279 3e-73 UniRef50_D1B8Z1 DEAD/DEAH box helicase domain protein n=1 Tax=Th... 279 3e-73 UniRef50_B7C8E9 Putative uncharacterized protein n=1 Tax=Eubacte... 279 3e-73 UniRef50_B2S5R2 ATP-dependent RNA helicase, DEAD/DEAH box family... 279 3e-73 >UniRef50_P0A9P7 Cold-shock DEAD box protein A n=201 Tax=Bacteria RepID=DEAD_ECOL6 Length = 629 Score = 1261 bits (3262), Expect = 0.0, Method: Compositional matrix adjust. Identities = 629/629 (100%), Positives = 629/629 (100%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF Sbjct: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 Query: 61 SLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 SLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR Sbjct: 61 SLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG Sbjct: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL Sbjct: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI Sbjct: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 Query: 361 ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELD 420 ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELD Sbjct: 361 ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELD 420 Query: 421 LETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRER 480 LETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRER Sbjct: 421 LETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRER 480 Query: 481 RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGE 540 RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGE Sbjct: 481 RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGE 540 Query: 541 VLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERREGGRGD 600 VLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERREGGRGD Sbjct: 541 VLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERREGGRGD 600 Query: 601 GRRFSGERREGRAPRRDDSTGRRRFGGDA 629 GRRFSGERREGRAPRRDDSTGRRRFGGDA Sbjct: 601 GRRFSGERREGRAPRRDDSTGRRRFGGDA 629 >UniRef50_P44586 Cold-shock DEAD box protein A homolog n=29 Tax=Pasteurellaceae RepID=DEAD_HAEIN Length = 613 Score = 747 bits (1928), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/629 (62%), Positives = 476/629 (75%), Gaps = 40/629 (6%) Query: 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 + TF DLGL IL+A++DLG+E PSPIQ CIPHLLNG DVLGMAQTGSGKTAAF+LPL Sbjct: 4 KITFNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPL 63 Query: 65 LQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 L +DP K PQ+LV+APTRELA+QVA+A F K+ +G +V LYGGQRYD+QLRAL+Q Sbjct: 64 LAQIDPSEKHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRALKQ 123 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 G Q+VVGTPGR+LDH++RGTL+LS+L +VLDEADEMLRMGFI+DVET+MA++PE HQTA Sbjct: 124 GAQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTA 183 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 LFSATMPE IRRIT+RFM +PQEV+I+ + PDI QS W V G+RKNEAL+RFLE ED Sbjct: 184 LFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVED 243 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 FDAAIIF RTK TL++ E LE+NG+ SAALNGDM Q LREQTL+RL++G LDI++ATDV Sbjct: 244 FDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATDV 303 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 AARG+D+ERISLVVNYDIP+D+ESYVHRIGRTGRAGR+GRALLFVE RERRLLRNIE M Sbjct: 304 AARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLM 363 Query: 365 KLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETL 424 K I EVELPN +L + R +KF AK+ +QLE DL+QYR+LL + + D E + Sbjct: 364 KKGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQ----DQENI 419 Query: 425 AAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRR-----E 479 AAA+L + QG++ LI+PPD PM +R R+RND RGDR + PR E Sbjct: 420 AAAMLMLLQGKQKLILPPDPPMEKRR----------RERND---RGDRRENPRSAERRGE 466 Query: 480 RRDVGD---MQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKG 536 R+ G+ M LYRIEVGR DGVEVRHIVGAIANEGDI+SRYIG+IKL+ ++T+ELP+G Sbjct: 467 RKGYGNPQPMDLYRIEVGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQG 526 Query: 537 MPGEVLQHFTRTRILNKPMNMQLLGDAQPHT-------GGERRGGGRGFGGER-REGGRN 588 MP E+LQ F +TR+LNK M M LG + G+R+G G F GER RE G + Sbjct: 527 MPKELLQQFAKTRVLNKQMQMSFLGAVKSDNSRGSDDFNGKRKGRGGDFRGERGRERGND 586 Query: 589 FSGERREGGRGDGRRFSGERREGRAPRRD 617 G R+ + + R FS + PRRD Sbjct: 587 NRGNRKFNEKSN-RTFSDK------PRRD 608 >UniRef50_Q8D2Y1 DeaD protein n=2 Tax=Enterobacteriaceae RepID=Q8D2Y1_WIGBR Length = 583 Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust. Identities = 311/561 (55%), Positives = 420/561 (74%), Gaps = 13/561 (2%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 M + E +F++LGLK IL ALNDLGY+KPSPIQ +CIP LL G DVLG+AQTGSGKTAAF Sbjct: 1 MNKKELSFSELGLKDFILLALNDLGYKKPSPIQEKCIPFLLKGYDVLGIAQTGSGKTAAF 60 Query: 61 SLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 LPLL N+D +LK PQI++L PTRELA+Q+ A SK+++ +N++ALYGGQ Y +Q++ Sbjct: 61 FLPLLNNIDLKLKLPQIIILTPTRELALQIKFACCSLSKYIKEINIIALYGGQNYSIQIK 120 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 +L++ PQIVVGTPGR+LD L + L+LS+++ VLDEADEMLRMGFIEDVE I + + Sbjct: 121 SLKRNPQIVVGTPGRILDLLNKKYLNLSEITSFVLDEADEMLRMGFIEDVENIFLKSSKQ 180 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 HQT LFSATMP AI RIT+RFMK+P+E+RI++S TRP+I Q+YW V+G+ K EAL+RFL Sbjct: 181 HQTILFSATMPAAIHRITKRFMKKPKEIRIKASENTRPNIKQNYWIVYGLCKIEALLRFL 240 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 E E FDA IIFVRTKNATLEV++ LE+NGYNS++LNGDMNQ LRE+TL R K G LDIL+ Sbjct: 241 EVEIFDAVIIFVRTKNATLEVSDVLEKNGYNSSSLNGDMNQILREKTLNRFKTGLLDILV 300 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATDVAARGLDV+RISLV+NYDIP+D ESY+HRIGRTGRAGR G+AL+FVENRER++L NI Sbjct: 301 ATDVAARGLDVDRISLVINYDIPLDVESYIHRIGRTGRAGRTGKALMFVENRERKILYNI 360 Query: 361 ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELD 420 ER +K + +++LP+ ELL K+RL F+ K++ Q+ S DL++Y+ LLSKI D Sbjct: 361 ERNIKEKLSQIKLPSVELLCKKRLNNFSEKIKNQINSLDLNKYQNLLSKIISFIGIS--D 418 Query: 421 LETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRER 480 ++ ++AALLK+AQ + LI+ PD F +++ + N + ++ + + Sbjct: 419 VKIISAALLKVAQKNKPLIISPD-------NFFNKNKKI----NLLINKNNKRKKLNIIK 467 Query: 481 RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGE 540 + LY+ E+G+ DG+E +HIV + N G I S IG+IK+F ++STIE+ K +P Sbjct: 468 NKKKSISLYKAEIGKKDGIESKHIVRTMINLGKIKSNDIGSIKIFFNYSTIEIYKKIPLN 527 Query: 541 VLQHFTRTRILNKPMNMQLLG 561 +L +++ I K +N++LL Sbjct: 528 LLSILSKSTIFKKSLNLKLLN 548 >UniRef50_Q3IJ60 ATP-dependent RNA helicase, cold shock protein A n=3 Tax=Alteromonadales RepID=Q3IJ60_PSEHT Length = 616 Score = 616 bits (1589), Expect = e-175, Method: Compositional matrix adjust. Identities = 321/620 (51%), Positives = 429/620 (69%), Gaps = 29/620 (4%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 TF L L IL+A+ +LGY+ PS IQA+CIP LL +DVLG+AQTG+GKTAAF+LPLL Sbjct: 5 VTFESLNLSPAILKAVEELGYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFALPLL 64 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 N+DP +K PQILVL PTRELA+QVAEA ++KH+RG+ V+ALYGGQ Y +QL ALR+G Sbjct: 65 NNIDPSVKQPQILVLTPTRELAIQVAEAFEQYAKHVRGIEVLALYGGQSYSIQLSALRRG 124 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 Q++V TPGRL+DH+ RGT+ L LVLDEADEMLRMGFI+DVE+IM + P QT L Sbjct: 125 AQVIVATPGRLIDHINRGTIKFDALQALVLDEADEMLRMGFIDDVESIMEKTPREKQTCL 184 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSATMP+ I+ I+ ++M P++V I + +T + Q +W + KN+A+VRFLEAE + Sbjct: 185 FSATMPKQIQNISSKYMNNPEQVHISARNSTVSSVEQVFWNA-SIHKNKAIVRFLEAEQY 243 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 + AI+FVRT+N T+++AE LER G+++A LNGDMNQ RE+T+ERLK G L+++IATDVA Sbjct: 244 EGAIVFVRTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVERLKSGMLNVVIATDVA 303 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARGLDV+R+SLV+NYDIP DSE+YVHRIGRTGRAGR G+A+LFV++ ER LL+NI R Sbjct: 304 ARGLDVDRLSLVINYDIPQDSEAYVHRIGRTGRAGRTGKAILFVKHNERYLLKNIIRHTN 363 Query: 366 LTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLA 425 I +VELP A+++ ++R+E AK+ LE+ D+ + + + + A+ EL E LA Sbjct: 364 SDIAQVELPTAKIVEEKRIEALQAKLTLALENKDITFFNEVAANM---AQKLELSAEDLA 420 Query: 426 AALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRND------------RGPRGDRE 473 ALL +AQ + + V + ++P RE +R+DR PR ND E Sbjct: 421 GALLCLAQQQSPIKV-EEVKIQP-RERNERNDRNPRS-NDRGDRGRRNERGGERGGERAE 477 Query: 474 DRPR-RERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIE 532 +PR R RD G M YRIEVGR+ GV+V++IVGAIANE DISS++IG+I+L +HST++ Sbjct: 478 RKPRERNSRDAGPMDTYRIEVGREHGVQVKNIVGAIANEADISSKFIGDIRLHDNHSTVQ 537 Query: 533 LPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGE 592 LPK MP +VL HF + I +PM + + D P RG ER GG S Sbjct: 538 LPKNMPKDVLDHFQKVFICKRPMGLTITADQGP-------AEPRGERSERPAGGEKRSFN 590 Query: 593 RREGGRGDGRRFSGERREGR 612 + + RGD R SG R+E R Sbjct: 591 KDDSARGDKR--SGPRKERR 608 >UniRef50_Q1MY97 DEAD/DEAH box helicase-like protein n=1 Tax=Bermanella marisrubri RepID=Q1MY97_9GAMM Length = 614 Score = 570 bits (1470), Expect = e-161, Method: Compositional matrix adjust. Identities = 304/631 (48%), Positives = 419/631 (66%), Gaps = 30/631 (4%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 M+E T FA LGL +L A+ + GYE+PSPIQ + IPHLL G+DVLG+AQTG+GKTAAF Sbjct: 1 MSESSTGFASLGLPFNLLRAIEEQGYEQPSPIQEQSIPHLLEGKDVLGLAQTGTGKTAAF 60 Query: 61 SLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 +LPLL E++ PQ+LVLAPTRELA QVA A+ +SKH V V ++YGG + Q R Sbjct: 61 TLPLLARTQNEVREPQVLVLAPTRELAQQVAMAVESYSKHESNVKVASIYGGSDFGSQFR 120 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 AL+QGPQ VVGTPGR++DH++RGTL L + +VLDEADEMLRMGFI+DV+ ++ Q+PE Sbjct: 121 ALKQGPQWVVGTPGRVMDHIRRGTLKLEGIRAVVLDEADEMLRMGFIDDVDWVLDQVPEK 180 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 Q ALFSATMP+ I+ + + ++EP E+RI+S T I Q YW V G+ KN+AL+R Sbjct: 181 RQIALFSATMPKQIKAVAEKHLREPTEIRIKSKTATNESIEQKYWLVKGVDKNQALLRIC 240 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 E +FDA ++FVRTK AT EVA+ + +G ALNGD+ QA RE+ ++RLK G++D+L+ Sbjct: 241 ETSEFDAMMVFVRTKQATEEVADYMRSHGLRCEALNGDVAQAQRERAVDRLKKGQVDMLV 300 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATDVAARGLDVERIS VVNYDIP D+ESYVHRIGRTGRAGR+G A+LFV RERR+L I Sbjct: 301 ATDVAARGLDVERISHVVNYDIPYDAESYVHRIGRTGRAGRSGEAILFVRPRERRMLSTI 360 Query: 361 ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELD 420 ER + I ++ELP A+ + +R ++F + + +E D++ ++ + S+I AE LD Sbjct: 361 ERVTRKKIQQIELPTAKEVNAKRRDQFKVRALEHIEGRDIEIFKKIASEI--LAEQPALD 418 Query: 421 LETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPR-DRNDRGPRGDREDR---- 475 LAAA +M+QG + L + P F+ DRG R +R +R RE+R Sbjct: 419 PIELAAAFAQMSQGNKPLFMDESEP-----RFKPETDRGERGERKERRNNSGREERKPIE 473 Query: 476 ----PRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTI 531 P ++ DV +M+ YR+ VG DGV+ +IVGAIANE DI S++IG+I+++ + +++ Sbjct: 474 LEAMPLKDFPDV-EMRRYRLAVGYKDGVKPGNIVGAIANEADIESKFIGHIEIYDTFASV 532 Query: 532 ELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSG 591 +LP GMP E L H + R+ +P+N++ L + RG G G R G N G Sbjct: 533 DLPSGMPEETLTHLKKARVCGRPINIEPLKN---------RGAGGGQKPRRNAKGGN-KG 582 Query: 592 ERREGGRGDGRRFSGERREGRAPRRDDSTGR 622 ++ +G RG + G + G+ R D R Sbjct: 583 KKPQGERGQNK---GGAKSGKPKRTGDRKPR 610 >UniRef50_Q5NZY2 ATP-dependent RNA helicase DeaD n=12 Tax=Bacteria RepID=Q5NZY2_AZOSE Length = 658 Score = 564 bits (1453), Expect = e-159, Method: Compositional matrix adjust. Identities = 310/609 (50%), Positives = 407/609 (66%), Gaps = 17/609 (2%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +FA L L+AP+L+AL+++GYE PSPIQA CIPHLL G D+LG AQTG+GKTAAF+LPLL Sbjct: 45 SFAQLDLRAPLLDALSEIGYETPSPIQAICIPHLLAGHDLLGEAQTGTGKTAAFALPLLD 104 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 LD +K PQ+LVLAPTRELA+QVAEA ++K++ G +V+ +YGGQ VQLR L +G Sbjct: 105 RLDLAVKNPQVLVLAPTRELAIQVAEAFQRYAKNLPGFHVLPVYGGQSMVVQLRQLARGA 164 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 ++VGTPGR++DH++R +L+L L+ LVLDEADEMLRMGFI+DVE I+ P QTALF Sbjct: 165 HVIVGTPGRVMDHIERKSLNLDSLTTLVLDEADEMLRMGFIDDVEWILQHTPAERQTALF 224 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA-EDF 245 SATMP+AIRR+ R+++EP+EV+I++S TT Q Y + K +AL R LE EDF Sbjct: 225 SATMPDAIRRVAHRYLREPREVKIKASTTTVSTTRQRYCQISVAHKLDALTRILEVEEDF 284 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 DAAIIFVRTK AT+E+A+ LE GY++AALNGDM Q LRE+ +E+LK G+LDI++ATDVA Sbjct: 285 DAAIIFVRTKTATVELADKLEARGYSAAALNGDMTQQLRERVIEQLKGGQLDIVVATDVA 344 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARGLDV RIS V+NYDIP D+E+YVHRIGRTGRAGR G A+LFV RE R+L+ IER + Sbjct: 345 ARGLDVSRISHVINYDIPYDTEAYVHRIGRTGRAGRTGSAILFVAPREMRMLKVIERATR 404 Query: 366 LTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLA 425 I ++LP+ E + +R+ F +V LES DL +R +++ ++ T E E L +A Sbjct: 405 QPIEALQLPSREAVADKRVAAFRQQVATVLESEDLAFFRDVVAGMESTHEAE---LHDIA 461 Query: 426 AALLKMAQGERTLIVP----PDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERR 481 AAL +AQ ER L +P PD P+ +R PR+ D+ RR Sbjct: 462 AALAFLAQRERPLQLPESKGPDIARLPEPRREPGAERAPRENRDKILE-------RRREF 514 Query: 482 DVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEV 541 G++Q YRIEVGR+ + IVGAIANE I SRYIG I L+ +ST+ELP +P +V Sbjct: 515 SEGNLQRYRIEVGRNQQATPKDIVGAIANEAGIESRYIGQINLYEDYSTVELPSALPHDV 574 Query: 542 LQHFTRTRILNKPMNMQLLGDAQPHTGGER-RGGGRGFGGERREGGRNFSGERREGGRGD 600 L R R+ +N++ L + R R G G R S + GR Sbjct: 575 LDILRRVRVRQHQLNIRPLDAEEAKRDAARVRPGAPRPGAAPRHAAHPGS-KPAHPGRVG 633 Query: 601 GRRFSGERR 609 R FS E+R Sbjct: 634 PRSFSSEKR 642 >UniRef50_C5S7U5 DEAD/DEAH box helicase domain protein n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S7U5_CHRVI Length = 662 Score = 556 bits (1432), Expect = e-156, Method: Compositional matrix adjust. Identities = 320/660 (48%), Positives = 413/660 (62%), Gaps = 50/660 (7%) Query: 3 EFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSL 62 E F LGL I +A+ +LGYE P+ IQ++CIPHLL GRD+LG AQTG+GKTAAF+L Sbjct: 6 ETSVGFDALGLSPVIAQAVKNLGYESPTAIQSQCIPHLLAGRDLLGQAQTGTGKTAAFAL 65 Query: 63 PLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 P+L LDP+L+ PQ+LVL PTRELA+QVAEA ++ ++G NV+ +YGGQ Y +QL L Sbjct: 66 PMLSRLDPDLRKPQVLVLTPTRELALQVAEAFQRYATDLKGFNVLPIYGGQGYGLQLSQL 125 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 ++ PQ++VGTPGR++DH++RGTL L + LVLDEADEML MGF ED++ I Q P Q Sbjct: 126 KRNPQVIVGTPGRVMDHIRRGTLALDSIRALVLDEADEMLNMGFAEDIDWIFDQAPAERQ 185 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 ALFSATMP AIRR+ + + +P EV+I ++ T I Q + V K + L R +E Sbjct: 186 VALFSATMPPAIRRVAQTRLVDPVEVKIAANSETVDTIEQHHCIVTRFHKLDVLTRIMEL 245 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 E FD +IFVRTKNAT E+A+ L+ +G+ + LNGDMNQ +RE+T+ERLK G+LD+L+AT Sbjct: 246 EPFDGLLIFVRTKNATTELADKLKAHGFAAEPLNGDMNQEMRERTVERLKQGQLDVLVAT 305 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 DVAARGLDVERIS VVNYDIP D +YVHRIGRTGRAGRAGRA+L VE RER LL++IER Sbjct: 306 DVAARGLDVERISHVVNYDIPTDPSAYVHRIGRTGRAGRAGRAILLVEPRERGLLKSIER 365 Query: 363 TMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLE 422 ++ IP +E P+A L + R+++F ++++ DLD + LL++I E E LD Sbjct: 366 VIRRPIPSMEPPSAAALSESRIDRFIGEIRKAQSEQDLDFFYRLLARISQEQEIEMLD-- 423 Query: 423 TLAAALLKMAQGERTLIVPPDAPMRPKR------------------EFRDRDDR------ 458 +AAAL + Q ER L V D P PKR + DR R Sbjct: 424 -IAAALAYLNQRERPLNVKEDPPRPPKRFDERGERGRGRDGDRRQGGWEDRPPRRERFDE 482 Query: 459 --GPRD----RNDRGPRGDREDRPRR--ERRDVGDMQLYRIEVGRDDGVEVRHIVGAIAN 510 G RD R DR R +R +RP R RRD D+ YRIEVG GV R IVGAIAN Sbjct: 483 RDGNRDERRPRFDRAERSERPERPERGQPRRDDADLTSYRIEVGHQHGVSPREIVGAIAN 542 Query: 511 EGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGE 570 E + RYIG I + HS ++LPKGMP EV QH R + + + + E Sbjct: 543 ESGLEGRYIGRIDIRDDHSVVDLPKGMPNEVFQHLKRVYVRGQALRIT--------PADE 594 Query: 571 RRGGGRGFGGERREGGRNFSGERREGGRGDGRR---FSGERREGRAPRRDDSTGRRRFGG 627 G G+G EG R+ SG RE R F R+G APRR S+G+ GG Sbjct: 595 SAGAGQGGAW---EGRRDRSGPPRERDSRPPRAGGDFQRRDRDGYAPRR-PSSGKSNDGG 650 >UniRef50_B4SPP3 DEAD/DEAH box helicase domain protein n=16 Tax=cellular organisms RepID=B4SPP3_STRM5 Length = 646 Score = 548 bits (1411), Expect = e-154, Method: Compositional matrix adjust. Identities = 297/584 (50%), Positives = 386/584 (66%), Gaps = 31/584 (5%) Query: 2 AEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFS 61 ++ + FA LGL +++A+ +GYE PSPIQA IP +L GRDVLG AQTG+GKTAAF+ Sbjct: 5 SQAQLQFAQLGLSESVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAFA 64 Query: 62 LPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 LP+L N+D + PQ LVLAPTRELA+QVAEA +S + G V+ +YGGQ Y QL A Sbjct: 65 LPVLSNIDLQQIKPQALVLAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQQLSA 124 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 LR+G IVVGTPGR++DHL R TLDLS+L LVLDEADEMLRMGFI+DVE ++ ++P Sbjct: 125 LRRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPAKR 184 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 Q ALFSATMP IRRI + ++++P EV I + TT +I Q YW V GM K +AL R LE Sbjct: 185 QVALFSATMPPQIRRIAQTYLQDPVEVTIAAKTTTSANIRQRYWWVSGMHKLDALTRILE 244 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 E FDA IIF RTK T E+A L+ G +AA+NGDM QA RE+T+ LK+G+LDIL+A Sbjct: 245 VEPFDAMIIFARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKLDILVA 304 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 TDVAARGLDVERIS V+NYDIP D+ESYVHRIGRTGRAGR+G A+LF RE+ +LR IE Sbjct: 305 TDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFATPREKGMLRQIE 364 Query: 362 RTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDL 421 R + I E++LP+ E + R+ KF +++ + L LD YR LL + + ++ Sbjct: 365 RATRQPIEEMQLPSVEAVNDNRINKFTSRITETLGQGGLDFYRQLLERFETEQNVPAIE- 423 Query: 422 ETLAAALLKMAQGERTLIVPPDAPMRPKREFR---------DRDDRGPRDRNDRGPRGDR 472 +AAAL KM QG+ ++ P P+R RE R +R +RG DRN+RGPR +R Sbjct: 424 --VAAALAKMMQGDTPFLLQP--PVRAPREERAPRERFERTERPERG--DRNERGPRFER 477 Query: 473 -----------EDRPRRERRDVGD----MQLYRIEVGRDDGVEVRHIVGAIANEGDISSR 517 E RPRR+ G M+ YRI VG GV+ +IVGAIANE + SR Sbjct: 478 GPRRDDAEGGFEQRPRRDVPPRGAPEQGMETYRISVGHQHGVKPANIVGAIANEAGLESR 537 Query: 518 YIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLG 561 +IG I + S ++LP MP +VL H + + + + M+ L Sbjct: 538 FIGRIDIHDDFSLLDLPAQMPSDVLTHLQKVWVSGQQLQMRPLA 581 >UniRef50_A6T3R2 ATP-dependent RNA helicase n=86 Tax=Bacteria RepID=A6T3R2_JANMA Length = 778 Score = 536 bits (1381), Expect = e-151, Method: Compositional matrix adjust. Identities = 282/577 (48%), Positives = 388/577 (67%), Gaps = 31/577 (5%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 FADL L P+L L +LGYE PSPIQA IP LLN RDVLG AQTG+GKTA+F+LP+L Sbjct: 9 FADLKLSEPLLRVLQELGYESPSPIQAATIPLLLNNRDVLGQAQTGTGKTASFALPILAR 68 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 +D + PQ LVLAPTRELA+QVAEA ++ ++ G +V+ +YGGQ Y QL ALR+G Sbjct: 69 IDIKQTTPQALVLAPTRELAIQVAEAFQRYATYIPGFHVLPIYGGQSYGAQLSALRRGVH 128 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 +VVGTPGR++DHL++G+LDLS++ +VLDEADEMLRMGFI+DVETI+ + PE QTALFS Sbjct: 129 VVVGTPGRVIDHLEKGSLDLSRIKTMVLDEADEMLRMGFIDDVETILQKTPESRQTALFS 188 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 ATMP AI+RI ++++P + + + T +I Q YW V GM+K +AL R LEAE+FD Sbjct: 189 ATMPSAIKRIATTYLRDPDLITVAAKTGTADNIRQRYWLVSGMQKLDALTRILEAENFDG 248 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 IIF RTK T E+A L+ G+++AA+NGD+ Q RE+T+++LKDG++DIL+ATDVAAR Sbjct: 249 MIIFARTKLGTEELASKLQARGFSAAAINGDIQQQQRERTIQQLKDGKIDILVATDVAAR 308 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 GLDVERIS V+NYD+P D ESY HRIGRTGRAGR+G A+LF+ RER LL+ IER + Sbjct: 309 GLDVERISHVINYDVPHDPESYTHRIGRTGRAGRSGEAILFIAPRERNLLKAIERATRQP 368 Query: 368 IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQ-----PTAEGEELDLE 422 I +ELP+ E + R+ +F ++ + + + L+ + +L+ + P E Sbjct: 369 ISVLELPSVEAVNDVRISRFKEQIAETIAAGGLEVFHSLIEDYEREHNVPAVE------- 421 Query: 423 TLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPR-------DRNDRGPRGDREDR 475 +AAAL K+A+G+ L++ +R + D+ G R +R DR RGDR +R Sbjct: 422 -IAAALAKLARGDVPLLLDKKNEVRERSWSDDKPVSGGRFERAERFERGDRPERGDRFER 480 Query: 476 ------PRRER----RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLF 525 PR+ER D G MQ +RIEVG GV+ +IVGAIANE + S+YIG I+++ Sbjct: 481 SERPAAPRKERIPRAPDAG-MQSFRIEVGHAHGVKPGNIVGAIANEASLDSKYIGRIEIY 539 Query: 526 ASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGD 562 +ST++LP+ + E H + + +N+ GD Sbjct: 540 DDYSTLDLPENLSPEQFNHLKTVWVAGQQLNISREGD 576 Score = 71.6 bits (174), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 42/115 (36%), Positives = 65/115 (56%), Gaps = 15/115 (13%) Query: 478 RERRDVG-DMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKG 536 RER+ G DM+ YR+EVG GV+ +IVGAIANE + ++YIG I++F +S ++LP G Sbjct: 635 RERKGSGVDMEPYRVEVGHAHGVKPANIVGAIANEAGLEAKYIGRIEIFDDYSLLDLPAG 694 Query: 537 MPGEVLQH------------FTRTRILNKP--MNMQLLGDAQPHTGGERRGGGRG 577 MP EV +R+ + P + + + + P+ GG+RR +G Sbjct: 695 MPTEVFDQLKSVAIGTHKLRLSRSSVAPAPEKTSGKKITLSAPNKGGDRRVAEKG 749 >UniRef50_A4C3X3 RNA helicase DeaD n=3 Tax=Alteromonadales RepID=A4C3X3_9GAMM Length = 624 Score = 533 bits (1374), Expect = e-150, Method: Compositional matrix adjust. Identities = 287/571 (50%), Positives = 379/571 (66%), Gaps = 13/571 (2%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F L L AP+L+A+N++GY P+PIQ++ IP LL G+DVLG AQTG+GKTAAF LPLL Sbjct: 9 FDQLNLLAPVLQAINEMGYITPTPIQSQAIPSLLAGKDVLGEAQTGTGKTAAFGLPLLSR 68 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 LD +LK PQ+LV+ PTRELA+QVAEA+TDF+KH+RG+ V +YGGQ Y QLR L +GPQ Sbjct: 69 LDADLKQPQMLVVCPTRELAIQVAEALTDFAKHIRGLFVATVYGGQSYTPQLRDLARGPQ 128 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 IVVGTPGR++DH+K+G L L L VLDEADEML MGF+ED+E I+ QIP+ Q A FS Sbjct: 129 IVVGTPGRMMDHIKKGRLKLDNLKACVLDEADEMLNMGFLEDIEWILNQIPDQTQMAFFS 188 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 ATMP I++IT +F+ +P V+I + +P I+Q WTV + K L R E D+DA Sbjct: 189 ATMPAPIKKITNQFLTDPIHVKIAVQKSDKPKITQKSWTVGRIGKTVGLERIAEVVDYDA 248 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 I+FVRT+N TL +AE L G+ ++ALNGDM Q RE+ +E+LK+GR++ILIATDV AR Sbjct: 249 MIVFVRTRNDTLVLAEHLVSKGFKASALNGDMQQQDRERIVEQLKNGRINILIATDVVAR 308 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 GLDV RI+ V+NYD+P DSESYVHRIGRTGRAGR G A+LF +RE R L +ER + Sbjct: 309 GLDVPRITHVINYDLPHDSESYVHRIGRTGRAGREGEAILFASHREVRSLSRLERITEGK 368 Query: 368 IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAA 427 I ++P AE LG+ R+E+ A + + +E +DL ++A++S++ + L+ LAAA Sbjct: 369 IEVFDMPTAEQLGQARIERTQAALVKAMEVNDLANFQAIVSQMAEQSNTTPLE---LAAA 425 Query: 428 LLKMAQGERTLIVPPDAPMRP-KREFRDRDDRGPRDRNDRGPRGDREDRP-----RRERR 481 LL +R + +P P +REF R DRG RDRNDR R DR +R R RR Sbjct: 426 LL----FDRQIALPFHPKADPVEREFAARSDRGGRDRNDRFDRNDRSERAPRERSERPRR 481 Query: 482 DVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEV 541 D G+ YR VGR GV IVGA+ANE I S IG I+LF + ++LPK MP Sbjct: 482 DNGEFDTYRFNVGRTHGVRPGDIVGAVANEIKIDSNDIGQIRLFDGFTHVDLPKNMPKPA 541 Query: 542 LQHFTRTRILNKPMNMQLLGDAQPHTGGERR 572 + + I ++ L+ Q +R Sbjct: 542 FEKLQQVLIRKHKISPSLVTAEQAAAADSQR 572 >UniRef50_C7HXF4 DEAD/DEAH box helicase domain protein n=3 Tax=Bacteria RepID=C7HXF4_THIIN Length = 666 Score = 529 bits (1363), Expect = e-148, Method: Compositional matrix adjust. Identities = 295/616 (47%), Positives = 394/616 (63%), Gaps = 69/616 (11%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 + FA+LGL P+L+AL D+GYE PSPIQA IP LL GRDVLG AQTG+GKTAAF+LP+L Sbjct: 7 SPFAELGLPEPLLQALRDVGYETPSPIQAATIPPLLAGRDVLGQAQTGTGKTAAFALPIL 66 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 +D + Q LVLAPTRELA+QVAEA ++ H+ G NV+ +YGGQ Y QL +L++G Sbjct: 67 AKIDCNARHTQALVLAPTRELAIQVAEAFARYATHLPGFNVLPIYGGQSYVPQLASLKRG 126 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 +VVGTPGR++DHL+RGTL L +L+ +VLDEADEMLRMGFI+DVE+I+ + P Q AL Sbjct: 127 AHVVVGTPGRIIDHLERGTLKLDQLAHMVLDEADEMLRMGFIDDVESILKKTPPQRQVAL 186 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSATMP AIRRI + ++++PQE+ I+++ TT I Q YW V G+ K +AL R LE E F Sbjct: 187 FSATMPSAIRRIAQTYLRDPQEITIKAATTTATHIQQRYWMVSGLHKLDALTRILEVEPF 246 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 + IIF RTK AT E+AE L G+ +AALNGD+ QALRE+ ++RLKDG+LDIL+ATDVA Sbjct: 247 EGMIIFARTKQATEELAEKLAARGFTAAALNGDVPQALRERMVQRLKDGQLDILVATDVA 306 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARGLDVERIS VVNYDIP D+ESYVHRIGRTGRAGR+G A+LFV RER LLR IER + Sbjct: 307 ARGLDVERISHVVNYDIPTDTESYVHRIGRTGRAGRSGDAILFVTPRERHLLRAIERATR 366 Query: 366 LTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLET-- 423 I +++LP+ E + R+ +F ++ + E L+ Y+ L+ + + +E D+ Sbjct: 367 QPITQMQLPSTEAVNDSRISRFMERITEAREQEGLEDYQRLVERYE-----QEFDIPAIE 421 Query: 424 LAAALLKMAQGERTLIVPPDA----------------------------PMRPKREFRD- 454 +AAAL +M QG + L++ P + RP R R+ Sbjct: 422 IAAALARMVQGNKPLLMRPGSEPSYNADTREESRAPRREREPREGREPRTPRPARATREE 481 Query: 455 -------RDDRGPRDRND-----------------RGPR--GDREDRPRRERRDVGD--- 485 R+ PRD +D PR E ER G Sbjct: 482 GPAARAPRERAKPRDLDDFTQTLMQAREAADAAPHSAPREAASAEHPAHSERTARGPHTA 541 Query: 486 ----MQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEV 541 + YR+EVGRD GVEVR++VGAIANE + +++IGNI + HS +ELP+GMP +V Sbjct: 542 SDVRFETYRVEVGRDHGVEVRNLVGAIANEAGLENKHIGNIAIRGDHSFVELPEGMPKDV 601 Query: 542 LQHFTRTRILNKPMNM 557 + +T + + + + Sbjct: 602 FRTLQKTWVSGRQLQL 617 >UniRef50_C9RIQ5 DEAD/DEAH box helicase domain protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RIQ5_FIBSS Length = 802 Score = 519 bits (1336), Expect = e-145, Method: Compositional matrix adjust. Identities = 301/648 (46%), Positives = 409/648 (63%), Gaps = 44/648 (6%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 TF DLGL +LEA+ GYE PSPIQA+ IP LL G ++LG AQTG+GKTAAFSLPLL Sbjct: 124 VTFDDLGLSPEVLEAVKLAGYETPSPIQAKAIPALLQGANLLGTAQTGTGKTAAFSLPLL 183 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 ++ + +LVL PTRELA+QV++A+ ++ M+ V VV +YGGQ +QLRAL++ Sbjct: 184 SRINFNGRETSMLVLTPTRELAIQVSDAIQQYAVKMQNVTVVPVYGGQDIAIQLRALKRK 243 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 IVV TPGRL+DH+KRG++ L + +VLDEADEML MGF+EDVETI+ +IP Q AL Sbjct: 244 ASIVVATPGRLIDHIKRGSISLGAVKAIVLDEADEMLDMGFMEDVETILKEIPADAQRAL 303 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSATMP+++++I + + E +E RI+ TT +I Q Y V K EAL R LE E+F Sbjct: 304 FSATMPDSVKKIIDQHLGEYEEARIEGKTTTVENICQRYLLVKNEHKIEALARVLEGEEF 363 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 D +IFVRTK T EVAE LE G+N A LNGD+ Q++RE+T+ RLK G+LDI++ATDVA Sbjct: 364 DGVLIFVRTKQNTTEVAEKLESRGFNVAPLNGDLAQSMRERTINRLKMGKLDIVVATDVA 423 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARG+DV+RISLVVNYDIP D+ESYVHRIGRTGRAGR+G A+LF+ RE+R+L+ IE+ + Sbjct: 424 ARGIDVDRISLVVNYDIPYDTESYVHRIGRTGRAGRSGNAILFITPREKRMLKTIEKATR 483 Query: 366 LTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEG--------- 416 I +E+P +E + K+R++ F AKV+ + +LDQ++ L+ + AEG Sbjct: 484 QPIDVMEMPTSEQISKKRVDAFKAKVKSVVSYGELDQFKELVRAL--AAEGCNMKDGVAL 541 Query: 417 -----EELDLETLAAALLKMAQGERTLI--VPP-DAPMRPKREFRD-RDDRGPRDRNDRG 467 E+ E +AAA++KM Q ++ L +PP +AP + + R RD G D G Sbjct: 542 EDGSVNEMTAEDIAAAVIKMYQKKQPLFPNLPPLEAPKERREKVRTGRDFLGESRNEDFG 601 Query: 468 PRGDREDRPRRERRD----VGDMQL-YRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNI 522 + + R R+ER++ V + L Y + VGR D V R IVGAIA E +I+S IG I Sbjct: 602 LNSEEQKRMRKERKEGLNGVEEGFLRYYLGVGRIDHVTPRDIVGAIAGEANINSSNIGRI 661 Query: 523 KLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGD---------AQPHTGGERRG 573 KLF ST+ELP +P +VL + I +++ D +PH E R Sbjct: 662 KLFDKFSTVELPNTLPQDVLDILSEMTIRGNDARFRVMTDEPPEGPAPGTRPHASREER- 720 Query: 574 GGRGFGGERREGGRNFSGERREGG----RGDGRRFSGERREGRAPRRD 617 R F +R+ G F + R GG R G RF + E R RR+ Sbjct: 721 --RSFHRDRKGG---FHDDERRGGFRKNREGGDRFGDKPFENRKARRE 763 >UniRef50_B1VFV5 ATP-dependent RNA helicase n=35 Tax=cellular organisms RepID=B1VFV5_CORU7 Length = 778 Score = 519 bits (1336), Expect = e-145, Method: Compositional matrix adjust. Identities = 284/558 (50%), Positives = 384/558 (68%), Gaps = 14/558 (2%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F DLGL + +A+ +G+ KPSPIQ + IP L+ G DV+G+AQTG+GKTAAF+LP+L Sbjct: 133 FGDLGLSPEVFDAVRAVGFTKPSPIQEQTIPLLMAGEDVVGLAQTGTGKTAAFALPILSR 192 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 L+ + + PQ LVLAPTRELA+QVAE+ DF++ M GVN++ +YGGQ Y QL LR+G Sbjct: 193 LNLKSRKPQALVLAPTRELALQVAESFEDFAEKMGGVNILPIYGGQPYGAQLSGLRRGAH 252 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 +VVGTPGR++DHL++G+LD+S+L +VLDEADEML MGF EDVE I+ PE Q ALFS Sbjct: 253 VVVGTPGRVIDHLQKGSLDISELRFMVLDEADEMLNMGFQEDVERILEDTPEDKQVALFS 312 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 ATMP AIR +++R++ PQEV ++S+ T +I Q Y V K +AL R LE DFDA Sbjct: 313 ATMPSAIRHLSKRYLNSPQEVTVKSTQRTAENIEQDYLIVHHREKLDALTRILEVTDFDA 372 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 I+FVRTKN T E+AE L GY +AA+NGD+ QA RE+T+++LKDGRLDIL+ATDVAAR Sbjct: 373 MIMFVRTKNDTEELAERLRARGYEAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAAR 432 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 GLDVERI+ V NYDIP D+ESYVHRIGRTGRAGR+GRA+LFV RERR+L++IER K Sbjct: 433 GLDVERITHVFNYDIPRDTESYVHRIGRTGRAGRSGRAVLFVTPRERRMLKSIERATKSR 492 Query: 368 IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAA 427 + E+ELP+ + + + R KF ++ + LE + +R L++ AE + LE +AAA Sbjct: 493 LNEIELPSVDQVNEARKAKFNRELTKNLEDPQVSVFRDLVTTY---AEANGVTLEDIAAA 549 Query: 428 LLKMAQGERTLIVPPDAPMRPKREFRDR-DDR-GPRDRNDRGPRGDREDR-----PRRER 480 L AQG ++ P+RE + R DDR G DR G E+R PR Sbjct: 550 LAAGAQGGEKFLMEE----APRREHKRRSDDRYGDADRRGGGAYRSFEERFNKPAPRFTD 605 Query: 481 RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGE 540 R+ +M++YR+ VG V IVGA+ANEG ++SR G I +F+ HS +ELP +P + Sbjct: 606 RNGNEMEVYRLSVGHRQRVRPGAIVGALANEGGLNSRDFGRISIFSEHSLVELPADLPKQ 665 Query: 541 VLQHFTRTRILNKPMNMQ 558 V + +TR+ + +N++ Sbjct: 666 VFEALDQTRVSGQLINIE 683 >UniRef50_C0Q9A4 DeaD n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0Q9A4_DESAH Length = 616 Score = 514 bits (1324), Expect = e-144, Method: Compositional matrix adjust. Identities = 275/596 (46%), Positives = 385/596 (64%), Gaps = 46/596 (7%) Query: 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 E+ F+++GL P+L+AL+DLGYE P+ IQAE IP++L GRD+LG AQTG+GKTAAF+LPL Sbjct: 18 ESGFSEMGLIKPVLKALDDLGYETPTTIQAETIPYILAGRDLLGQAQTGTGKTAAFALPL 77 Query: 65 LQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 L +D +LK PQ+LVLAPTRELA+QVAE+ ++ ++G NV+ +YGGQ Y QL L++ Sbjct: 78 LSRIDIKLKKPQVLVLAPTRELAIQVAESFKGYAARIKGFNVLPVYGGQAYAGQLNQLKR 137 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 G ++VGTPGRL+D +KRG LDL+++ LV+DEADEMLRMGFI+DVE I+ Q P G Q A Sbjct: 138 GVHVIVGTPGRLMDLMKRGVLDLTQIMTLVIDEADEMLRMGFIDDVEWILEQTPPGRQVA 197 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 LFSATMP I++I +++ +P++V I+ T I Q +W V G K +AL R LEAE Sbjct: 198 LFSATMPAPIKKIAIKYLTDPKDVFIRLRTATADTIRQRFWMVKGTHKLDALTRILEAET 257 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 FDA I+FVRTK AT+E+AE LE GY + ALNGD+ Q RE+T++R K G++DIL+ATDV Sbjct: 258 FDAIIVFVRTKTATVELAEKLEARGYAAVALNGDIAQKARERTIDRFKKGKIDILVATDV 317 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 AARGLDVER+S V+NYDIP +ESYVHRIGRTGRAGRAG A+LFV RER +L+ IE+T Sbjct: 318 AARGLDVERVSHVINYDIPNGAESYVHRIGRTGRAGRAGDAILFVSPRERWMLKVIEKTT 377 Query: 365 KLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETL 424 + I ++LP+ E + +R+ F + L S +LD Y L+ + + + ++ + Sbjct: 378 RQQIEMMKLPSTEAINDKRIADFNQSITDTLASKELDLYLELMEQYR---QEHDVPALDI 434 Query: 425 AAALLKMAQGERTLI--------VPPDAPMRPKREFRD--------------RDDRGPRD 462 AAAL M QGE+ L+ V + P R + +F+D R D P+D Sbjct: 435 AAALALMLQGEKPLLLSSPKKVSVVSEKPSRTEDKFKDKPLRKDEKSRDKAFRKDEKPKD 494 Query: 463 RNDRGPRGDREDRPRRERRDVGD---------------------MQLYRIEVGRDDGVEV 501 + R D+P + + D M+ +RIEVG G + Sbjct: 495 KPFRKDDEKSRDKPSPKAAKLADKPAGKKKASPKKAAALPPGKGMERFRIEVGDVHGAKP 554 Query: 502 RHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNM 557 + IVGAIANE ++ ++IG I + HS ++LP GMP + + + R+ + + + Sbjct: 555 KDIVGAIANEAELDGKFIGAITIEHDHSFVDLPIGMPATIFELLKKVRVAGQQLKI 610 >UniRef50_C4LJP9 ATP-dependent RNA helicase n=15 Tax=Bacteria RepID=C4LJP9_CORK4 Length = 823 Score = 514 bits (1323), Expect = e-144, Method: Compositional matrix adjust. Identities = 280/533 (52%), Positives = 365/533 (68%), Gaps = 5/533 (0%) Query: 20 ALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILV 79 A+ +G+E PSPIQA IP L GRDV+G+AQTG+GKTAAF+LP+L LD K PQ LV Sbjct: 168 AVKKVGFETPSPIQAATIPILAQGRDVVGLAQTGTGKTAAFALPILSRLDRSQKKPQALV 227 Query: 80 LAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDH 139 L+PTRELA+QVA+A +F+ H+ GV+V+ +YGGQ Y +QL LR+G IVVGTPGR++DH Sbjct: 228 LSPTRELALQVADAFQEFADHLGGVHVLPIYGGQSYGIQLSGLRRGAHIVVGTPGRVIDH 287 Query: 140 LKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITR 199 L+RG+LDLS+L LVLDEADEML MGF EDVE I+A PE QTALFSATMP +IRR+++ Sbjct: 288 LERGSLDLSELKYLVLDEADEMLNMGFQEDVERILADTPEHKQTALFSATMPASIRRLSK 347 Query: 200 RFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATL 259 +++++P+EV I+S T +I Q Y V K +AL R LE +FDA I+F RTK T Sbjct: 348 QYLEDPREVTIKSQQRTADNIHQQYLLVNHHYKLDALTRILEVTEFDAMIMFARTKQNTE 407 Query: 260 EVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVN 319 E+AE L G+++AA+NGDM Q RE+T+++L+DGRLDIL+ATDVAARGLDVERIS VVN Sbjct: 408 ELAEKLRARGFSAAAINGDMAQNQRERTVDQLRDGRLDILVATDVAARGLDVERISHVVN 467 Query: 320 YDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELL 379 YDIP D+ESYVHRIGRTGRAGR+G A+LFV RERRLLR+IER K +I E++LP + + Sbjct: 468 YDIPHDTESYVHRIGRTGRAGRSGEAILFVTPRERRLLRSIERATKSSIEEMQLPTVDEV 527 Query: 380 GKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAALLKMAQGERTLI 439 + R KFA + + L +D +R L I AE E L +AAAL +Q + Sbjct: 528 NETRKAKFAQSITESLADPQVDLFRGL---INSYAEEHETPLADIAAALATQSQSGDEFL 584 Query: 440 VPPDAPMRPKREFRDRDDRGPRDRNDRG--PRGDREDRPRRERRDVGDMQLYRIEVGRDD 497 + D R R R R R+ + R R ++ PR R +M +Y+I VG+ Sbjct: 585 LKEDTIRRNDRRNDRRGRRNDREPDTRSLNERFSGKEPPRFTDRTGKEMAVYKIAVGKRQ 644 Query: 498 GVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRI 550 V IVGAIANEG ++SR G I +F+ HS +ELP +P EV + TR+ Sbjct: 645 QVRPGAIVGAIANEGGLNSRDFGKISIFSEHSLVELPADLPMEVFEALEDTRV 697 >UniRef50_Q7UG20 ATP-dependent RNA helicase n=2 Tax=Bacteria RepID=Q7UG20_RHOBA Length = 931 Score = 512 bits (1318), Expect = e-143, Method: Compositional matrix adjust. Identities = 283/595 (47%), Positives = 393/595 (66%), Gaps = 24/595 (4%) Query: 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 E F DL L+A + +A+ GY+KP+PIQAE IP++L+GRDVL +QTG+GKTAAF+LP+ Sbjct: 303 EPLFRDLDLRAEVQKAVAASGYDKPTPIQAEIIPYMLDGRDVLAQSQTGTGKTAAFALPI 362 Query: 65 LQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 L +D + PQ+LVLAPTRELA+QVA + T + + G V A+YGGQ Y+ QL+ LR+ Sbjct: 363 LSRVDVRSRRPQVLVLAPTRELAIQVARSFTKYGADLSGFQVAAIYGGQDYEPQLKQLRR 422 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 G Q+VVGTPGR++DH+KRGTLDL L LVLDEADEML MGF+EDV+ ++ + PEG Q A Sbjct: 423 GVQVVVGTPGRVIDHVKRGTLDLGSLDCLVLDEADEMLNMGFLEDVQFVLEKSPEGRQVA 482 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 LFSAT+P+ IR+I ++ +P + I+S T + Q V K +AL R LE E+ Sbjct: 483 LFSATLPKPIRKIADEYLNDPARITIKSKTITAASVRQRALFVSPRDKIDALTRILEVEE 542 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 D I+F +TK++TL VAE L + G+++ ALNGDM Q +RE+T+++LK G+LD+L+ATDV Sbjct: 543 TDGVIVFTKTKDSTLSVAEKLSQQGFSAIALNGDMPQKVRERTIDQLKRGQLDVLVATDV 602 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 AARGLDV RIS V N+D+P DSESYVHRIGRTGRAGR+G+A++F+ N +RR LR IE T Sbjct: 603 AARGLDVPRISHVFNFDLPHDSESYVHRIGRTGRAGRSGQAIIFLTNAQRRQLRFIENTT 662 Query: 365 KLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETL 424 K I +++P + + R+ +F ++ DL Y+ ++++ AE +E + Sbjct: 663 KQPIEIIDIPTVADINEARVRRFKQRITDVSADQDLTVYKDMIAQY---AEESGKPMEMI 719 Query: 425 AAALLKMAQGERTLIVPPDAPMRPK--REFRDRDD---RGPRDRNDR-GPRGDR-EDRPR 477 AAAL +M+Q R ++ RPK RE DRD+ R D NDR G RG +DRPR Sbjct: 720 AAALAEMSQNGRPFLL----KERPKKQRERSDRDNSRGRDSFDSNDRSGNRGSFGDDRPR 775 Query: 478 RER----RDVGD-MQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIE 532 R + V + M YR++VG DGV+ +IVGA+ANE I YIG I + SH+ I+ Sbjct: 776 RPKGRPLTPVKEGMTRYRLDVGWQDGVKPGNIVGAVANEAGIDGEYIGPINIRDSHTLID 835 Query: 533 LPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGR 587 LP+GMP ++ Q +T + K +N++ GD G+ GG F R+EG R Sbjct: 836 LPEGMPSDIYQTLRKTWVAGKRLNLEEAGDVVDDFEGD--GGRSNF---RKEGFR 885 >UniRef50_D2NRF7 Superfamily II DNA and RNA helicase n=3 Tax=Bacteria RepID=D2NRF7_9MICC Length = 732 Score = 511 bits (1315), Expect = e-143, Method: Compositional matrix adjust. Identities = 299/660 (45%), Positives = 408/660 (61%), Gaps = 56/660 (8%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ- 66 F DLGL A +L AL ++GYEKPSPIQ + IP LL G DV+G+AQTG+GKTAAF+LP L Sbjct: 63 FTDLGLDARVLAALEEVGYEKPSPIQEQTIPLLLEGHDVVGLAQTGTGKTAAFALPALSR 122 Query: 67 -----NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 +++ + Q+LVLAPTRELA+QVAEA + ++ HM V+ +YGG Y QL Sbjct: 123 MAELADINGVSRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQLAG 182 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 LR+G Q+VVGTPGR++DHL++G+LDLS L LVLDEADEMLRMGF EDVE I+ P+ Sbjct: 183 LRRGAQVVVGTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVEKILEGTPDSK 242 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 Q ALFSATMP +IR+I ++++ +P+EVR+++ TT +ISQ Y V K +A+ R LE Sbjct: 243 QVALFSATMPNSIRKIAQQYLNDPREVRVKAKTTTSSNISQRYMQVMHSHKLDAMTRVLE 302 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 E++D I+FVRTK T EVA+ L+ G+ +AA+NGD+ Q LRE+T++ L+DGR+DIL+A Sbjct: 303 VENYDGIIVFVRTKKETEEVADKLKARGFAAAAINGDIPQQLRERTVDALRDGRIDILVA 362 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 TDVAARGLDVERISLVVNYDIP D+ESYVHRIGRTGRAGR G A+LFV RE+ +LR IE Sbjct: 363 TDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGREGAAILFVTPREKYMLRQIE 422 Query: 362 RTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDL 421 + + + + +P AE + + R ++FA ++ + +ES DL +R ++ + + Sbjct: 423 KATRQKVEPMHMPTAEAVNETRKQRFAQQITETIESEDLSFFRQIIEDYENE---HDTTA 479 Query: 422 ETLAAALLKMAQGERTLIVPPDAPMRPK-REFRDRDDRGPRDRNDRGPRGDREDRPRRER 480 E +AAAL +AQ R + + K R F D D +DRG R + +R Sbjct: 480 EDIAAALAVIAQQGRPFFLDESEDIAHKSRPFSDED-------SDRGGR-----KAKRAH 527 Query: 481 RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGE 540 D G M Y++ VGR V IVGA+ANEG I IG+I + + + LP+ +P + Sbjct: 528 NDEG-MVNYKLNVGRSSRVTAGAIVGALANEGGIKGSQIGSIDIRQHFTIVGLPEDLPRD 586 Query: 541 VLQHFTRTRILNKPMNMQ-------------LLGDAQPHTGGERRGGGRGFGGE------ 581 T+I + +N++ G + R GGR FGG Sbjct: 587 FFDRLRDTKIAGEFINIRKDNGPKGGGGGRGFGGGRREGGYRGNREGGRDFGGRDNRREG 646 Query: 582 ----RREGGRNFSGE----RRE-GGRGDGRRFSGERREGRAPRRD-----DSTGRRRFGG 627 R+GGR+F G+ RR+ GG+ + R F G GR RRD + G R FGG Sbjct: 647 GYRGNRDGGRDFGGDRDFKRRDFGGKRNDRDFGGRDFGGRDNRRDGGYRGNRDGGRDFGG 706 >UniRef50_A4BET4 DEAD/DEAH box helicase-like protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BET4_9GAMM Length = 579 Score = 506 bits (1303), Expect = e-142, Method: Compositional matrix adjust. Identities = 274/579 (47%), Positives = 383/579 (66%), Gaps = 19/579 (3%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 TFADLGL +L+ L+ LGYE P+PIQ++ I LL+G DVLG+AQTG+GKTAAFSLPLL Sbjct: 6 TFADLGLAPVLLKTLDSLGYETPTPIQSQAIVQLLDGNDVLGLAQTGTGKTAAFSLPLLS 65 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 +D PQ LVL PTRELA+QVAEA +++ + +V+ +YGG QLRAL+Q P Sbjct: 66 RIDTTKNKPQALVLCPTRELAIQVAEAFQTYARGVDNFHVLPIYGGADMRNQLRALKQNP 125 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 Q++VGTPGR++DHL+RGTLDLS L LVLDEADEMLRMGFIED++ I+ P+ QTALF Sbjct: 126 QVIVGTPGRVMDHLRRGTLDLSDLKHLVLDEADEMLRMGFIEDIDWILEHTPKDKQTALF 185 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SATMP I+RIT ++ K+P ++ I++S + I Q W G+ K + L R LE ED++ Sbjct: 186 SATMPHQIKRITDQYQKDPVKIEIKASHSELQQIEQLVWRARGLDKLDGLTRILEIEDWN 245 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 A IIFVRT+ ++E L GY + AL+G++ Q RE L +K G+LDI+IATDVAA Sbjct: 246 AIIIFVRTRVECQFLSEKLAARGYAATALSGEVAQKQREDILSAMKKGKLDIIIATDVAA 305 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RG+D+ERI+ V+N+DIP D +Y HRIGRTGRAGR+G+A+LF + RE+R++R+IER K Sbjct: 306 RGIDIERITHVINWDIPGDVSTYTHRIGRTGRAGRSGKAILFCKPREQRIIRDIERATKS 365 Query: 367 TIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAA 426 + + +P+AE LG+ R F + V + +E+ LD ++A+++ E LD +AA Sbjct: 366 ELIDYPMPSAEKLGEHRAAAFKSTVVEHIEADKLDYFKAMITSWVDEGEHSLLD---IAA 422 Query: 427 ALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDM 486 ++ MAQ ++ L +P D RP+R+ DR RG E R RR D + Sbjct: 423 SMALMAQEDKPLQLPKDPEPRPRRDREDRPTRG-------------ESRNRRRDLDYAAI 469 Query: 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFT 546 YR++VGR D E IVGAIANEG I ++I NI + + + ++LP GMP E+ + Sbjct: 470 T-YRLDVGRRDRAEPGSIVGAIANEGGIEGKFINNIDIKENFTLVDLPDGMPTEIFEQLK 528 Query: 547 RTRILNKPMNMQLLGDAQPHTGGER--RGGGRGFGGERR 583 +TR+ +P+N+++ D P G +R R R GG+R+ Sbjct: 529 KTRVKGRPLNLRVWKDEAPKDGKDRGNRRPSRRDGGDRK 567 >UniRef50_Q484Q1 RNA helicase DeaD n=1 Tax=Colwellia psychrerythraea 34H RepID=Q484Q1_COLP3 Length = 611 Score = 495 bits (1274), Expect = e-138, Method: Compositional matrix adjust. Identities = 270/577 (46%), Positives = 370/577 (64%), Gaps = 30/577 (5%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 FA LGL +L A+ +G+ + IQA IP LL G+DVLG AQTG+GKTAAF LP L Sbjct: 15 VAFASLGLPENLLSAVLSIGFTSATDIQALTIPPLLAGKDVLGEAQTGTGKTAAFGLPAL 74 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 +D +K PQ++VLAPTRELA+QVAEA+ F K M+G+ V LYGGQ Y Q + L +G Sbjct: 75 AKIDTSIKKPQLMVLAPTRELAMQVAEAIESFGKDMKGLRVATLYGGQSYGPQFQQLERG 134 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 Q+VVGTPGRL+DHL+R +L L +L VLDEADEML MGF+ED++ I+ IP+ Q L Sbjct: 135 AQVVVGTPGRLMDHLRRKSLKLDELRVCVLDEADEMLNMGFLEDIQWILDHIPKTAQMCL 194 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSATMP AIR+I RF+K+P+ +++ + + +I+Q W V G+ K AL R E ++ Sbjct: 195 FSATMPPAIRKIANRFLKDPEHIKVAAVKKAKANITQYAWKVSGITKMTALERIAEVVEY 254 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 DA IIFVRT+N T+++AE LER GY + ALNGD+NQA RE+ ++++K G+ IL+ATDV Sbjct: 255 DAMIIFVRTRNDTVDIAEKLERAGYPALALNGDLNQAQRERCIDQMKSGKSSILVATDVV 314 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARGLD+ RISLV+NYD+P D+E+YVHRIGRTGRAGR G ++ FV RE +R+ ER Sbjct: 315 ARGLDIPRISLVINYDLPGDNEAYVHRIGRTGRAGREGMSIAFVRPREMYSIRHYERLTN 374 Query: 366 LTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLA 425 T+ +LPN + +GK R+E+ +V + + D+ R ++ + +E +D LA Sbjct: 375 GTVLNYDLPNIQDIGKIRIERTRVEVAKIVADKDISSMREIVEGMAAESEVSMID---LA 431 Query: 426 AALLKMAQGERTLIVPPD-APMRPKREFRDRDDRGPRDRNDRG----------------- 467 AALL Q ++ L D P R RE DR+DRG DRN RG Sbjct: 432 AALLFQKQMKQPLQPKEDPKPRRDARERTDRNDRG-NDRNSRGNDRNSRGNDSRSAGRDS 490 Query: 468 ----PRGDREDRPRR---ERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIG 520 R +R+++PR+ R DV D Q YR+EVG++ G IVGAIANE + S YIG Sbjct: 491 RGGENRSNRDEKPRKAKVNRSDV-DWQTYRLEVGKEHGARPGDIVGAIANEISLDSSYIG 549 Query: 521 NIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNM 557 I L HS ++LPKG+P ++ R+ +P+++ Sbjct: 550 AINLHDKHSFVQLPKGIPTDLFNQLKGVRVRRQPLSI 586 >UniRef50_B0U160 DEAD-box subfamily ATP-dependent helicase n=18 Tax=Francisella RepID=B0U160_FRAP2 Length = 581 Score = 494 bits (1272), Expect = e-138, Method: Compositional matrix adjust. Identities = 257/580 (44%), Positives = 382/580 (65%), Gaps = 28/580 (4%) Query: 2 AEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFS 61 +E + F+ LGL I++ + LGYE P+PIQ IP++L+GRDVLG AQTG+GKTAAF+ Sbjct: 3 SETKKDFSQLGLNQDIIDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFA 62 Query: 62 LPLLQNLDPELK--APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119 LPL+ N+D E + APQ+LVLAPTRELA+QVAE F+K++ ++V +YGGQ Y Q+ Sbjct: 63 LPLINNMDLESRDRAPQVLVLAPTRELAIQVAEQFQAFAKNIPNLDVACIYGGQEYGSQI 122 Query: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179 RAL+QG ++VVGT GR++DH+++GTL L L LVLDEADEMLRMGFI+DV +++ + + Sbjct: 123 RALKQGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVRYVLSHVSD 182 Query: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239 Q LFSAT+P I I + +++ P ++++++ T ++Q + + G RK +AL R Sbjct: 183 ECQRLLFSATIPTDIADIIQEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRL 242 Query: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299 LE E+ D IIFV+TK +T+EVA+ L+ GY AA+NGDM Q+ RE +++ + + D+L Sbjct: 243 LEVEETDGVIIFVKTKTSTIEVADNLKALGYRVAAINGDMQQSQREYIVDQFRSAKSDVL 302 Query: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359 +ATDV ARG+D+ERIS V+NYD+P DS++YVHRIGRTGRAGR G ++ V +E R LR Sbjct: 303 VATDVVARGIDLERISHVINYDMPNDSDTYVHRIGRTGRAGREGISISLVPLKEMRFLRT 362 Query: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLE-SSDLDQYRALLSKIQPTAEGEE 418 +ER + EV +P+A+ L + R++ F ++ L+ + LD Y+ +++ I+ + E Sbjct: 363 LERFTGSPMQEVFMPSAKDLAQSRIDHFKTRIASALDKNKSLDNYKEIITSIR---DELE 419 Query: 419 LDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPR-------------DRND 465 LD + L A L +AQG+++ P + R R RDR+ RG DR+D Sbjct: 420 LDSDELLAVLTLLAQGKKSFF-PREIQARDDRPQRDRNLRGNSRDGGRNDRFERRGDRSD 478 Query: 466 RGPRGDREDR-------PRRERRDVG-DMQLYRIEVGRDDGVEVRHIVGAIANEGDISSR 517 R R DR D+ R+ RR V D+ Y++EVGRD+ V+ R+IVGAIANEG+I S+ Sbjct: 479 RNSRFDRSDKFDRSDRSDRKPRRAVNIDLTTYKLEVGRDNDVQPRNIVGAIANEGNIDSK 538 Query: 518 YIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNM 557 +I NI + H+ ++LP + +V+ H + K +N+ Sbjct: 539 HICNISIQKDHTLVDLPANLSPKVISHLRNVWVAGKKLNL 578 >UniRef50_A5CVQ6 ATP-dependent RNA helicase DeaD n=2 Tax=sulfur-oxidizing symbionts RepID=A5CVQ6_VESOH Length = 608 Score = 488 bits (1255), Expect = e-136, Method: Compositional matrix adjust. Identities = 254/553 (45%), Positives = 373/553 (67%), Gaps = 15/553 (2%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 + F LGL IL L+ +GYE PSPIQ +CI HLLN +D++G AQTG+GKTAAF LPLL Sbjct: 12 SKFERLGLSNTILNVLDSIGYETPSPIQEQCITHLLNNKDIIGQAQTGTGKTAAFVLPLL 71 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 ++ + APQ+L+LAPTRELA+QV+EA+ +++ M+G +V+ +YGGQ YD+QLR L++G Sbjct: 72 DKINLNINAPQLLILAPTRELAIQVSEAVQTYARGMKGFHVLPIYGGQSYDIQLRPLKRG 131 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 +VGTPGR++DH+++ TL L L VLDEADEML+MGFI+D++ IM +IPE Q AL Sbjct: 132 VHAIVGTPGRVMDHIEKKTLKLDNLKSFVLDEADEMLKMGFIDDIKWIMQRIPEQRQIAL 191 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM-RKNEALVRFLEAED 244 FSATMP I++I ++F+ +P+ ++I++ T I+Q Y V G+ K EAL R LE Sbjct: 192 FSATMPNVIKKIAKQFLNQPKIIKIKTKTETATTITQKYCMVGGLSNKLEALTRILEVTV 251 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 FDA IIFVRTK T E+ E L G+++ A+NGD+ Q RE+ + K G++DILIATD+ Sbjct: 252 FDAMIIFVRTKTLTTELTEKLSARGFSADAINGDIQQNQRERIINDYKQGKIDILIATDI 311 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 AARGLDVERIS VVNYDIP D+ESYVHRIGRTGRAGR G A+LFV NRERR+L IE Sbjct: 312 AARGLDVERISHVVNYDIPQDAESYVHRIGRTGRAGRKGEAILFVSNRERRMLNTIEHVT 371 Query: 365 KLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETL 424 + I +ELP+ +++ +R+E F + Q + + +L+ ++ L+ + Q E ++++ + Sbjct: 372 RQKITPIELPSVKIINAKRIETFKQNIIQTINNQNLEIFKKLVGEFQ--QENPKIEISQI 429 Query: 425 AAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVG 484 ++AL +AQG L++ ++E ++ P+++ R +P + + Sbjct: 430 SSALAYIAQGNEPLLL-------SEKESNLGFNQTPKEKIIISIRA----KPLKGFPKI- 477 Query: 485 DMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQH 544 M Y+IEVG ++ V+ +I+GAIAN+ ++ S YIG+I++F STI+LP + EV Sbjct: 478 PMCRYKIEVGNNNNVKTSNILGAIANKTNMDSEYIGSIQIFDHFSTIDLPAKISNEVFGV 537 Query: 545 FTRTRILNKPMNM 557 +T + K +N+ Sbjct: 538 LQKTIVCGKHLNI 550 >UniRef50_Q5ZT20 ATP-dependent RNA helicase n=4 Tax=Legionella pneumophila RepID=Q5ZT20_LEGPH Length = 589 Score = 485 bits (1249), Expect = e-135, Method: Compositional matrix adjust. Identities = 255/584 (43%), Positives = 366/584 (62%), Gaps = 26/584 (4%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 + F+ + +AL D+ + PSPIQA+ IP +L GRD + +AQTG+GKTAAF+LP+L Sbjct: 6 SNFSTFNFSNALNKALEDMKFITPSPIQAQTIPLILQGRDAIALAQTGTGKTAAFALPIL 65 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 QNL PE+ Q L+LAPTRELA+QVAE SK+ R V + L GGQ Y QL+ LR G Sbjct: 66 QNLSPEISTTQALILAPTRELAIQVAEQFELLSKYQRNVTIAVLCGGQEYGRQLKQLRSG 125 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 Q+VVGTPGR+LDH+ +GTL L+ L +LDEADEMLRMGFIEDVETI+ ++PE Q AL Sbjct: 126 AQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEKLPEKKQMAL 185 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSATMP IR+I ++ +P + I+ T I Q + +K +AL+R LE ED+ Sbjct: 186 FSATMPYRIRQIANTYLNDPASIEIRMETATVKSIEQRFLFASVHQKPDALIRVLEVEDY 245 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 I+FVRTK++T EVAE L+++G + A++GD+ Q+LRE+ + + K G +DIL+ATDVA Sbjct: 246 QGVIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIAQFKQGAIDILVATDVA 305 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARGLDVER++ V+NYD+P D+E+YVHRIGRTGRAGR+G +LFV +E RL+ +IER + Sbjct: 306 ARGLDVERVTHVINYDMPHDNETYVHRIGRTGRAGRSGVTILFVTPKESRLISSIERHTR 365 Query: 366 LTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLA 425 I +V++PN ++ R ++F + + +L + Y+ ++ + + +D+ Sbjct: 366 QRIEKVQVPNDHMIQMARQQRFMSNITTRLNHEHVYSYKRIVEEYIKEHDVSAVDVAAAL 425 Query: 426 AALLKMAQGERTLIVPPDAPMRPKREF------------RDRDDRGPRDRNDRGPRGDRE 473 A LL R + P A K E R ++DR + +G RG ++ Sbjct: 426 ALLLHKDMPWRKELNMPKAASAFKEERARAGEKGLDLRGRFKEDRKSSFADRKGARGSKK 485 Query: 474 DRPR---RERRDVGD-----------MQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYI 519 D + ER+ D L+RI+VG+ GV+ +IVGAIANE + SRYI Sbjct: 486 DFAKDFSNERKKFNDGRKAVNQESVAQDLFRIDVGKIHGVKPGNIVGAIANEAGLQSRYI 545 Query: 520 GNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDA 563 +K+ HST+ LPKGMP EV++ T+ + + +N+ L+G A Sbjct: 546 TGLKIHEDHSTVRLPKGMPKEVMKDLTKAWVCGRQLNLTLIGSA 589 >UniRef50_A0Z0M4 ATP-dependent RNA helicase n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z0M4_9GAMM Length = 582 Score = 484 bits (1245), Expect = e-135, Method: Compositional matrix adjust. Identities = 262/574 (45%), Positives = 364/574 (63%), Gaps = 44/574 (7%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F LGL + E L LGYE +PIQA IP LL GRDV+G+AQTG+GKTAAF+LP+L N Sbjct: 11 FNSLGLPDFLQENLQSLGYETATPIQAGTIPLLLEGRDVVGLAQTGTGKTAAFALPILAN 70 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 +D ++++PQ LVL PTRELA QVAEA + + M G+ +++++GG QL++LR+G Sbjct: 71 IDVKVRSPQALVLCPTRELAQQVAEAFRSYGRGMGGLRILSIFGGADMRQQLKSLREGTH 130 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 IVV TPGRLLDH++R ++DL+ ++ +VLDEADEMLRMGFI+DV+TI+A+ P+ + ALFS Sbjct: 131 IVVATPGRLLDHIERRSIDLTGINAVVLDEADEMLRMGFIDDVDTILAKTPKERKVALFS 190 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 ATMP+ +R I + + P E+ + ++ TT +I Q YW G K EAL R L ED + Sbjct: 191 ATMPKRVRDIANKHLSNPAEISVAAAATTNENIEQCYWLAKGASKLEALKRLLAFEDTEG 250 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 I+F RT+ +T +AE L + G ++ LNGDM+Q +R +T+ LK G LD+L+ATDVAAR Sbjct: 251 VIVFTRTRESTTVIAEQLRQTGLKASPLNGDMDQKMRLRTVSDLKSGALDVLVATDVAAR 310 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 GLDVERI+ V+NYD+P D E+YVHRIGRTGRAGR G+A+LFV RERR+LRNIER + + Sbjct: 311 GLDVERITHVINYDVPFDEEAYVHRIGRTGRAGRKGKAILFVVPRERRMLRNIERLTRQS 370 Query: 368 IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAA 427 IPE++LP+ + +R E FA ++ L D +A L +I T + D ++A A Sbjct: 371 IPEIKLPSVLAIDAKRREAFADSIRTALA----DPMQAELEEIIDTLNKDS-DYRSIAVA 425 Query: 428 LLKMAQGERTLIVPPDAPMRPK------------REFRDRDDRGPRDRNDR--------- 466 L M P A PK R+ RD P + R Sbjct: 426 LAGMLHS-------PGASKGPKHAKGEKHTPYGTRDARDEKSSKPNRKERRQGLQKKAAT 478 Query: 467 -------GPRGDR---EDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISS 516 P+ ++ E RP R+ DV M+ +R+EVGR GV+ ++GAIANE I Sbjct: 479 SESETPSAPKNEKHLGEARPLRDHPDV-PMERFRVEVGRKHGVKPGELMGAIANEAGIEG 537 Query: 517 RYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRI 550 +YIG I + STI+LP+G+P +L+H +TR+ Sbjct: 538 QYIGMINILEECSTIDLPEGIPKSILKHLKKTRV 571 >UniRef50_Q11039 Cold-shock DEAD box protein A homolog n=27 Tax=Bacteria RepID=DEAD_MYCTU Length = 563 Score = 476 bits (1224), Expect = e-132, Method: Compositional matrix adjust. Identities = 262/575 (45%), Positives = 364/575 (63%), Gaps = 27/575 (4%) Query: 2 AEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFS 61 A TFADL + +L A+ D+GYE P+ IQA IP L+ G DV+G+AQTG+GKTAAF+ Sbjct: 9 AASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFA 68 Query: 62 LPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 +P+L +D K PQ LVL PTRELA+QVAEA + ++ +NV+ +YGG Y VQL Sbjct: 69 IPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAG 128 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 LR+G Q+VVGTPGR++DHL+R TLDLS++ LVLDEADEML MGF +DVE I+++ PE Sbjct: 129 LRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYK 188 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 Q ALFSATMP AIR+++ +++ +P EV ++ +ISQSY V RK +AL R LE Sbjct: 189 QVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALTRVLE 246 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 E F+A I+FVRTK AT E+AE L G+++AA++GD+ QA RE+T+ L+DG +DIL+A Sbjct: 247 VEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVA 306 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 TDVAARGLDVERIS V+NYDIP D+ESYVHRIGRTGRAGR+G AL+FV RE LL+ IE Sbjct: 307 TDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIE 366 Query: 362 RTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDL 421 + + T+ E +LP E + +R+ KFA + L ++ +R L+ + + ++ + Sbjct: 367 KATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYE---REHDVPM 423 Query: 422 ETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERR 481 +AAAL +G ++ PD P+ + + RD R RP Sbjct: 424 ADIAAALAVQCRGGEAFLMAPDPPLSRRNRDQRRDRPQRPKR-----------RP----- 467 Query: 482 DVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEV 541 D+ YR+ VG+ + IVGAIANEG + G I++ S +ELP +P Sbjct: 468 ---DLTTYRVAVGKRHKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRAT 524 Query: 542 LQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGR 576 L+ +TRI ++++ +P R GG+ Sbjct: 525 LKKLAQTRISGVLIDLR---PYRPPDAARRHNGGK 556 >UniRef50_B7VSB7 ATP-dependent RNA helicase n=74 Tax=Gammaproteobacteria RepID=B7VSB7_VIBSL Length = 689 Score = 464 bits (1193), Expect = e-129, Method: Compositional matrix adjust. Identities = 251/553 (45%), Positives = 352/553 (63%), Gaps = 11/553 (1%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 M+E F +L L IL AL+ +G+ P+PIQA IP LL GRD LG AQTG+GKTAAF Sbjct: 29 MSESVIQFNELALNENILSALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAF 88 Query: 61 SLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 SLPLL ++ PQ +++APTRELA+QVA + + + ++G+ V+ +YGG Q+R Sbjct: 89 SLPLLNKINLNQHKPQAIIMAPTRELAIQVAAEIKNLGRDIKGLKVLEIYGGASIVDQMR 148 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 AL +G IVVGTPGR+ D L R L L + VLDEADEML+MGF++DV I+ Q PE Sbjct: 149 ALSRGAHIVVGTPGRVKDLLTRDRLHLDEAHTFVLDEADEMLKMGFVDDVTWILEQAPES 208 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 Q LFSATMP ++ I R+++ P +V + + T ++Q+YW V G+ K+EA+ R L Sbjct: 209 AQRVLFSATMPPMVKTIVDRYLRNPAKVDVAGTNHTVDKVAQNYWVVKGVEKDEAMSRLL 268 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 E E+ DA+I+FVRT+ T +A+ L G+ +AAL+GD+ Q+LRE+T++ +K G +DIL+ Sbjct: 269 ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV 328 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATDV ARGLDV RI+ V NYDIP D ESY+HRIGRTGRAGR G+A+L V + R+LR I Sbjct: 329 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI 388 Query: 361 ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELD 420 ER K + E++LP + + R+ K A+++ + ES L+ + L+S +Q E E+D Sbjct: 389 ERVTKSQMEEIQLPQRDEVAAARVAKLGAELETEKESKALENFAGLISTLQ---ESLEVD 445 Query: 421 LETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRER 480 TLAA LLK QG+ L + PM E RD++ R R + RGDR Sbjct: 446 AATLAAMLLKRQQGKSPLFYVGEDPMIAAIE-RDKNRRKERREDRDNGRGDRN------- 497 Query: 481 RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGE 540 + D Y+++VGR+ GV+V+ IVGA+ANE ++ IG IKL + ++LPK M E Sbjct: 498 FNTQDWDTYQLQVGREQGVQVKDIVGALANELGLTKGSIGAIKLDQGSTYVQLPKAMNSE 557 Query: 541 VLQHFTRTRILNK 553 ++ RI K Sbjct: 558 TAGKLSKLRIRQK 570 >UniRef50_B9ZPI5 DEAD/DEAH box helicase domain protein n=2 Tax=Bacteria RepID=B9ZPI5_9GAMM Length = 627 Score = 458 bits (1179), Expect = e-127, Method: Compositional matrix adjust. Identities = 269/558 (48%), Positives = 349/558 (62%), Gaps = 18/558 (3%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +FA+LGL + AL LG+ P+P+QA CIP LL G DVLG AQTG+GKT AF LPL+ Sbjct: 6 SFAELGLSESLARALLQLGFTTPTPVQAACIPALLAGDDVLGEAQTGTGKTGAFGLPLID 65 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 ++DP + Q L+LAPTRELA QVA A+ F+ + G+ ++ +YGGQ VQ+RALR G Sbjct: 66 SIDPAQRRVQALILAPTRELAGQVATALEGFAASIDGLEILPVYGGQPMGVQIRALRDGA 125 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 Q+VVGTPGR++DH+KRGTL L L +VLDEADEMLRMGF+E++E I+ Q P QT LF Sbjct: 126 QVVVGTPGRVVDHIKRGTLTLDALRMVVLDEADEMLRMGFVEEIEWILEQTPAERQTTLF 185 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAE-DF 245 SATMP IRRI R M+EPQE+RI + DI QSY V K EAL R +E E Sbjct: 186 SATMPAPIRRIAHRHMREPQEIRIGAGNEAGTDIDQSYCLVDQRHKTEALGRMIEVEAGL 245 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 DAAI+F RTK AT E+AEAL G S+ LNGDM Q RE+ + L+DGRLD+++ATDVA Sbjct: 246 DAAIVFARTKAATAEIAEALNAQGVQSSPLNGDMEQGERERVVADLRDGRLDVIVATDVA 305 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARG+DV RI+ V NYD P D+E YVHRIGRTGRAGR GRA+LF+E R+RR+LR+IER Sbjct: 306 ARGIDVPRITHVFNYDAPGDAEVYVHRIGRTGRAGRKGRAILFLEPRKRRMLRDIERLTG 365 Query: 366 LTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLA 425 + E ++P+ + RR E+ A ++Q +L Q ALL ++ + E DL Sbjct: 366 KPVREQKVPDRAAVIARREERLAERLQAELAGEASPQLDALLDRLLANGQMGERDLARAL 425 Query: 426 AALLKMAQGERTLIVP------PDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRE 479 A QG P A RP+R+ R DR RDR R RG ++ Sbjct: 426 LA--LATQGTPLDGTPNAHDPVTAAASRPERDSH-RADRN-RDRAPRPSRG-------KD 474 Query: 480 RRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPG 539 R DM Y + VGR+ G+ IVGA+ANEG ++ R IG I L HS ++LP + Sbjct: 475 RGPEADMVRYYMPVGRNHGIAPGAIVGALANEGGLNGRDIGRIGLQDDHSHVDLPAALDE 534 Query: 540 EVLQHFTRTRILNKPMNM 557 ++ + N+ + M Sbjct: 535 AAVRRLGNIHVANRRLEM 552 >UniRef50_Q1QYG3 DEAD/DEAH box helicase-like protein n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QYG3_CHRSD Length = 568 Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust. Identities = 258/552 (46%), Positives = 345/552 (62%), Gaps = 22/552 (3%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 TFA+L L + IL L LGYE PS IQA+ IP LL GRDVLG AQTG+GKTAAF+LPLL Sbjct: 10 TFAELSLPSTILSTLETLGYETPSLIQAKTIPALLEGRDVLGQAQTGTGKTAAFALPLLS 69 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 LD + + PQ+LVLAPTRELA QVA + + + ++G+ V++L GGQ Y QL LR+G Sbjct: 70 RLDLQRREPQVLVLAPTRELAQQVAASFVQYGRGVKGLEVLSLCGGQEYREQLSGLRRGA 129 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 Q++VGTPGR++DHL RG+L L L+ LVLDEADEMLRMGFI+DV+ +++ P+ Q F Sbjct: 130 QVIVGTPGRVIDHLDRGSLKLDGLNALVLDEADEMLRMGFIDDVKRVVSDTPKDAQRVFF 189 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SAT+P+ I RI ++ +P + I++ T I Q + G K EAL R LE E D Sbjct: 190 SATLPDEISRIVNHYLVDPLRIAIETKTKTAEGIEQRLVRIEGGAKLEALSRLLEVEPVD 249 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 AAI+FVRT+ A + E L G N+AAL+GD++Q+LRE+T+ERLK G++D+LIATDVAA Sbjct: 250 AAIVFVRTRAACTTLVEQLLLRGVNAAALSGDLDQSLRERTVERLKRGKVDVLIATDVAA 309 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RGLDV RI+ V NYD+P D+E+Y HRIGRTGRAGR G A+ F RE+R +R++ER Sbjct: 310 RGLDVPRITHVFNYDLPQDAEAYTHRIGRTGRAGRTGVAITFAGGREQRRVRDMERVTGQ 369 Query: 367 TIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAA 426 + EVELP+ + + R E F +V L D R L+ + + D LA Sbjct: 370 QMQEVELPDEDAIRAHRNELFRKRVLDTLARGS-DYQRELIDGLV----DDGYDPVDLAC 424 Query: 427 ALLKMAQ-GERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGD 485 A+ MA+ GE + P R R+ RDD+ +R DRGP Sbjct: 425 AMASMARSGEAPIGRLPKPGERRSRQSSGRDDKP--NRRDRGPS--------------AG 468 Query: 486 MQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHF 545 M YR+ VG DGV+ +VGA+ANEG I IG I + + S +ELP +P VL Sbjct: 469 MTRYRVSVGHKDGVKPGQLVGALANEGGIDGGKIGRIDIRNAFSVVELPNTLPAAVLSRI 528 Query: 546 TRTRILNKPMNM 557 + R+ +P+ + Sbjct: 529 AQARVAGRPLEI 540 >UniRef50_C7MCD0 DNA/RNA helicase, superfamily II n=2 Tax=Actinomycetales RepID=C7MCD0_BRAFD Length = 669 Score = 454 bits (1167), Expect = e-126, Method: Compositional matrix adjust. Identities = 249/544 (45%), Positives = 343/544 (63%), Gaps = 13/544 (2%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +F D+ L AP+ A+++LG+ PS IQA+ IP LL GRDV+G+AQTG+GKTAAF LPLL Sbjct: 85 SFDDIALPAPLRRAVDELGFTTPSAIQAQAIPPLLEGRDVIGVAQTGTGKTAAFGLPLLA 144 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 +DP L+ Q LVLAPTRELA+QVA+A+ F+ + G++VVALYGG Y Q RAL +G Sbjct: 145 AIDPSLREVQALVLAPTRELAMQVADAIASFATSIGGLDVVALYGGSPYGPQERALARGA 204 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 Q+VVGTPGR++DH++R L L + VLDEADEMLRMGF EDVE I++ P+ Q ALF Sbjct: 205 QVVVGTPGRVMDHMRRTNLRLDTIRVAVLDEADEMLRMGFAEDVEEILSHSPDTRQVALF 264 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SATMP AI+R+ + M++P V + +T + Q+Y V + AL R L D + Sbjct: 265 SATMPAAIQRVAQTHMQDPVRVSVSPQSSTVKSVHQTYAVVPFRHRTGALARVLATSDAE 324 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 AAI+FVRT+ A EV AL G +A+++GD+ Q RE+ +ERL+DG L +L+ATDVAA Sbjct: 325 AAIVFVRTRAAAEEVGTALVGRGLIAASISGDVPQKEREKIVERLRDGSLQVLVATDVAA 384 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RGLDVERI LVVN+D+P ++ESYVHRIGRTGRAGR+G AL F+ ERR L+NIER K Sbjct: 385 RGLDVERIGLVVNFDVPKEAESYVHRIGRTGRAGRSGEALTFIGPHERRALKNIERATKQ 444 Query: 367 TIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAA 426 T+ E +P+ + K RL +V ++E L+ YR L+ + AE ++D LAA Sbjct: 445 TLAEAVIPSPRDVSKHRLAAQLTQVPARVERGRLELYRELIGQF--VAE-HDIDPLELAA 501 Query: 427 ALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDM 486 AL M+ G+ P + + G + DR PRGDR+ PR Sbjct: 502 ALGAMSVGDEG----------PGTATEEEEFTGAKLGEDRSPRGDRDRGPREAAATERGY 551 Query: 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFT 546 Y++ VG G IVGAI EG + + IG I++F + +++ + E ++ + Sbjct: 552 TSYKVGVGHTHGARPPGIVGAITGEGGLHGKDIGKIQIFPHFALVQIRGSLSPEQMERIS 611 Query: 547 RTRI 550 R ++ Sbjct: 612 RAKV 615 >UniRef50_Q48FQ8 ATP-dependent RNA helicase, DEAD box family n=23 Tax=Pseudomonadaceae RepID=Q48FQ8_PSE14 Length = 570 Score = 451 bits (1159), Expect = e-125, Method: Compositional matrix adjust. Identities = 262/561 (46%), Positives = 352/561 (62%), Gaps = 24/561 (4%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 FA L L I+ A+ GYE+PS IQ + IP +L G D++G AQTG+GKTAAF+LP+L Sbjct: 19 FAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHR 78 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 +DP + PQ L+LAPTRELA+QVA A ++K M GV VVA+YGG QL+A+R G Q Sbjct: 79 IDPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRNGAQ 138 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 IVV TPGRL DHL+R L+ ++ LVLDEADEML++GF++D+E I +PE QT LFS Sbjct: 139 IVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTVLFS 198 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 AT+P++IR I R +++P+ V+IQ+ T I Q++ V +K A++ LE EDFDA Sbjct: 199 ATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLEVEDFDA 258 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 I+FVRTK ATL++A ALE GY +AALNGD+ Q RE+ ++ LKDGRLDI++ATDVAAR Sbjct: 259 LIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVAAR 318 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 GLDV RI+ V N D+P D ESYVHRIGRTGRAGR GRALL V RERR+L+ IER Sbjct: 319 GLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTGQK 378 Query: 368 IPEVELPNAELLGKRRLEKFAAKVQQQL---ESSDLDQYRALLSKI--QPTAEGEELDLE 422 + EV LP+A+ + R++K + + ES+ D L + I P A L + Sbjct: 379 VAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIGCSPRALAAALLRK 438 Query: 423 TLAAALLKMAQGERT-LIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERR 481 L +A ER +VP +AP RG DR +R DR DRP RERR Sbjct: 439 ATNGQALTLAAIERERPLVPNNAP------------RG--DRPERSGSSDRGDRPERERR 484 Query: 482 DVGDM----QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM 537 + R +G DG+ ++++GAI NEG ++ IG I++ S S +ELP+ Sbjct: 485 APVPLAEGRARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDG 544 Query: 538 PGEVLQHFTRTRILNKPMNMQ 558 +L TR+ K + ++ Sbjct: 545 LERLLTKLKDTRVAGKQLKLR 565 >UniRef50_Q3AX69 DEAD/DEAH box helicase-like n=18 Tax=cellular organisms RepID=Q3AX69_SYNS9 Length = 624 Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust. Identities = 252/558 (45%), Positives = 352/558 (63%), Gaps = 6/558 (1%) Query: 2 AEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFS 61 +E ++ F G +L+ L D GY PSPIQ P L+ GRD++G AQTG+GKTAAF+ Sbjct: 67 SEPQSGFDGFGFSEALLKTLADKGYSDPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFA 126 Query: 62 LPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 LPLL+ L+ K PQ+LVLAPTRELA+QVA++ ++ + V+A+YGG + Q+ Sbjct: 127 LPLLERLESGQKTPQVLVLAPTRELAMQVADSFKAYAAGHPHLKVLAVYGGTDFRSQIST 186 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 LR+G +VVGTPGR++DH+++GTLD S L+ LVLDEADEMLRMGFI+DVE I+ Q+P+ Sbjct: 187 LRRGVDVVVGTPGRVMDHMRQGTLDTSGLTSLVLDEADEMLRMGFIDDVEWILEQLPKER 246 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 Q LFSATMP IRR+++R++ +P EV I++ I Q TV K EAL R L+ Sbjct: 247 QVVLFSATMPPEIRRLSKRYLNDPAEVTIKTKDQDGKLIRQRAITVPMSHKLEALQRVLD 306 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 A + IIF RTK TL VAE LE G+ A LNGD+ Q RE+T+ERL+ G +D+L+A Sbjct: 307 ACGGEGVIIFARTKVITLTVAETLEAAGHQVAVLNGDVPQNQRERTVERLRSGSVDVLVA 366 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 TDVAARGLDVERI LV+NYD+P DSE+YVHRIGRTGRAGR G A+LF+ RERR +RN+E Sbjct: 367 TDVAARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAVLFMTPRERRFIRNLE 426 Query: 362 RTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLE--SSDLDQYRALLSKIQPTAEGEEL 419 R I +E+P + + RL++ ++ + + + ++ + +Q A +L Sbjct: 427 RATGQPIEMMEVPGNTAINQGRLDRLRKRLSEAANGVAGNSEEGALIQELMQRVATELQL 486 Query: 420 DLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRE 479 E +A A L +A G L+ D + + D + R R DRP R Sbjct: 487 TPEQIALAALNLAIGPNGLLRKGDDDW--IQNTQRMDRDRGDRGDRGERRERRIDRPARA 544 Query: 480 RRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPG 539 + DMQ YR+ VG D V+ ++VGAIA E + R IG I++F +HS ++LPKGMP Sbjct: 545 PEE--DMQRYRVAVGHRDRVKPGNLVGAIAGETGLQGRSIGRIQIFDNHSLVDLPKGMPE 602 Query: 540 EVLQHFTRTRILNKPMNM 557 ++ R++N+ + + Sbjct: 603 DIFNSLRTLRVMNRELQI 620 >UniRef50_Q31AC4 DEAD/DEAH box helicase-like protein n=9 Tax=Prochlorococcus marinus RepID=Q31AC4_PROM9 Length = 593 Score = 438 bits (1127), Expect = e-121, Method: Compositional matrix adjust. Identities = 233/552 (42%), Positives = 339/552 (61%), Gaps = 12/552 (2%) Query: 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 E F D G IL +L++ GY+ P+PIQ IP L+ GRD+LG AQTG+GKTAAF+LPL Sbjct: 50 ENGFLDFGFNQSILNSLSNKGYKNPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPL 109 Query: 65 LQNL--DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 ++ L + EL A ++LV+ PTRELA QVAE+ +S +A+YGG Y Q+ AL Sbjct: 110 IEKLADNKELNA-KVLVMTPTRELATQVAESFKSYSSESTNFKTIAIYGGTDYRNQIYAL 168 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 ++ +VVGTPGR++DH+++GT ++ ++ LVLDEADEML MGF+ED+E I+ Q+P+ Q Sbjct: 169 KRKVDVVVGTPGRIMDHIRQGTFKVNSINCLVLDEADEMLNMGFLEDIEWIIDQLPKNKQ 228 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 LFSATMP IR I ++++ +P E+ I+S ISQ + V K +AL R LE Sbjct: 229 MVLFSATMPNEIRNIAKKYLNDPAEILIKSVKKETQLISQKFLYVQRHHKLDALKRILEL 288 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 + + IIFVRTK T +AEALE G++ A LNGD+ Q RE T++RLK G +DIL+AT Sbjct: 289 NN-EGVIIFVRTKLLTTSIAEALENLGHSVAVLNGDIPQNQRENTVDRLKKGFIDILVAT 347 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 DVAARGLDVERI LVVNYD P D E+Y HRIGRTGRAGR+G A+LFV +RE+ LRN+E Sbjct: 348 DVAARGLDVERIKLVVNYDFPFDKETYTHRIGRTGRAGRSGEAILFVNHREKHFLRNLEN 407 Query: 363 TMKLTIPEVELPNAELLGKRRLEKFAAKVQQ-QLESSDLDQYRALLSKI-QPTAEGEELD 420 + + I E+ +P+ +++ ++R+EK V + L D ++ +AL+ + E +D Sbjct: 408 STRTKIEEINIPSNKIINEKRMEKLIENVNESSLAKEDNEENKALIIDVLDNLKEKHSMD 467 Query: 421 LETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRER 480 +A A + + G + V D K+ DR+ N R + Sbjct: 468 DSNIAMAAINLVIGNKAFFVNEDDSWIHKQNNTDRNRSNRNGNNRMRNSNRRNNFQN--- 524 Query: 481 RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGE 540 + Y+ + G+ DGV V +I+ +I N +I+ R IG I++F +S ++LP+ + E Sbjct: 525 ---DSFETYKFDFGKFDGVRVANIISSICNSTNINGRSIGKIQIFNDYSLVDLPRDLHRE 581 Query: 541 VLQHFTRTRILN 552 + ++ N Sbjct: 582 TKNKLKKIKVRN 593 >UniRef50_A9ENG9 ATP-independent RNA helicase n=18 Tax=Bacteria RepID=A9ENG9_SORC5 Length = 624 Score = 427 bits (1097), Expect = e-118, Method: Compositional matrix adjust. Identities = 252/573 (43%), Positives = 351/573 (61%), Gaps = 29/573 (5%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 +FA LG+ +L L +LGYE+P+PIQ E IPHLL GRD+LG A TG+GKTAAF+LPLL Sbjct: 8 ASFAALGIAPALLGVLAELGYEEPTPIQREAIPHLLTGRDLLGQAATGTGKTAAFALPLL 67 Query: 66 QNLD-----PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 Q L+ P L P+ LVL PTRELA+QVAEAM + + + GV V+++YGGQ + QLR Sbjct: 68 QRLEIGGEPPRL--PEALVLVPTRELAMQVAEAMHRYGRRL-GVQVLSVYGGQPFGQQLR 124 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 ALR+G +VV TPGR LDH+ RGTL L + +VLDEADEML MGF E +E I++ P Sbjct: 125 ALRRGVHVVVATPGRTLDHIGRGTLALDGIRTVVLDEADEMLDMGFAEALEEILSATPGA 184 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRI---QSSVTTRPDISQSYWTVWGMRKNEALV 237 QT LFSAT+P I I R ++EP V+I +++ P + Q+ + V K+ AL Sbjct: 185 RQTVLFSATLPPRIAAIAGRHLREPVRVKIAGEKAAPGELPRVRQTAYIVPRAHKSAALT 244 Query: 238 RFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLD 297 R L+ ED +AI+F RT+N E+ EAL GY + AL+G +Q R++ + R + G + Sbjct: 245 RVLDMEDPSSAILFCRTRNEVDELTEALRARGYEAQALHGGFSQEHRDRVMARFRAGTAE 304 Query: 298 ILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLL 357 +L+ATDVAARGLD+E +S V+NYD+P E YVHRIGRTGRAGR G A+ VE RE L+ Sbjct: 305 LLVATDVAARGLDIEHVSHVINYDVPCAPEVYVHRIGRTGRAGREGAAITLVEPREHYLI 364 Query: 358 RNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGE 417 RN+ER I LP L RRLE A +++ L +++R ++ + + Sbjct: 365 RNVERLTGQRIEAATLPTVADLRARRLELTRASLREALIEGGAERFRVVVEGL-----AD 419 Query: 418 ELDLETLAAALLKMA----QGER---TLIVPPDAPMRPKREFRDRDDRGPR-DRNDRGPR 469 E D+ +AAA +K+A +G+R +P P P+ R RDDR PR RG Sbjct: 420 EFDVMDIAAAAVKLAHDATEGDREEEEAEIPSFRPP-PRGPERARDDRAPRGPAGARGRP 478 Query: 470 GDREDRPRRERRDV----GDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLF 525 G+ + RPRRE R+ G++ + GR+ G+ +VGAIANE +SSR IG I++ Sbjct: 479 GEAQARPRRETREARETDGNVARLYVSAGRNAGIRPADLVGAIANEASLSSRDIGAIEIA 538 Query: 526 ASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQ 558 ST+E+P V++ TR+ + + ++ Sbjct: 539 DGFSTVEVPADAADAVIEALRATRLKGRKVQVR 571 >UniRef50_C0W1P0 Superfamily II helicase n=2 Tax=Actinomyces RepID=C0W1P0_9ACTO Length = 616 Score = 424 bits (1091), Expect = e-117, Method: Compositional matrix adjust. Identities = 255/598 (42%), Positives = 368/598 (61%), Gaps = 25/598 (4%) Query: 3 EFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSL 62 E TTFADL L +L A+ ++G+E P+PIQ + IPHLL GRD++G+AQTG+GKTAAF L Sbjct: 2 ETMTTFADLNLPENVLSAITEMGFETPTPIQEQAIPHLLEGRDIVGIAQTGTGKTAAFGL 61 Query: 63 PLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 P+L ++DP A Q +VLAPTRELA+Q A A+ F+ HM V VV +YGG Y Q++ L Sbjct: 62 PMLAHIDPGFNAVQAIVLAPTRELAMQSATAIESFAAHMPKVKVVTVYGGASYTPQIKGL 121 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 + G Q+VVGTPGR++D +++G L L+ +S LVLDEADEMLRMGF EDVETI A +PE + Sbjct: 122 KSGAQVVVGTPGRVIDLIEKGALKLNNVSVLVLDEADEMLRMGFAEDVETIAASMPESGK 181 Query: 183 --TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 TALFSATMP+ I+R+ + + +P + + +T +I Q+Y V K AL R L Sbjct: 182 RITALFSATMPDFIQRVADQHLTDPVRIEVARQSSTVENIHQTYAVVPFKHKLGALGRVL 241 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 D DAAI+FVRT+ EVA + G+ +AA++GD++Q RE+ + RL+DG LD+L+ Sbjct: 242 ATRDEDAAIVFVRTRVDADEVAVDMATRGFTAAAISGDVSQNERERIVSRLRDGSLDVLV 301 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATDVAARGLDVERI LV+N+D+P ++E+YVHR+GRTGRAGRAGR+L F +E+ LR I Sbjct: 302 ATDVAARGLDVERIGLVINFDVPRETEAYVHRVGRTGRAGRAGRSLTFFTPKEQFRLRQI 361 Query: 361 ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELD 420 E+ + E+ +P+ + + R + + + ++E L+ Y LL +I+ T E++ Sbjct: 362 EKLTGTKMEEIVIPSPREVSEFRARRLVSLMPDRIELGRLELYYDLLHEIRHTT---EIE 418 Query: 421 LETLAAALLKMAQGERTLIVPPDAPMRPKREFR---DRDDRGP---------RDRNDRGP 468 +E +AAALL A G++ P R + R + DD G RD G Sbjct: 419 VEDIAAALLAHAIGDKG---PSQEERRGAGKIRREEEIDDDGNFVAASFEAGRDGGKGG- 474 Query: 469 RGDREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASH 528 R RP R G + YR+EVG+ DGV+ IVGAI EG ++ +G I ++ + Sbjct: 475 RAKGAKRPSAPRISSGFSRRYRVEVGKRDGVKPGAIVGAITGEGGVNGADLGRIDIYPTF 534 Query: 529 STIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTG----GERRGGGRGFGGER 582 S +EL + + ++ + + + ++ +P G+RRG RG +R Sbjct: 535 SLVELSGELSEKAASKISKAFVSGRQLRIKEDTGPRPAAEGGDRGDRRGASRGRSADR 592 >UniRef50_D1BSR4 DEAD/DEAH box helicase domain protein n=5 Tax=Actinomycetales RepID=D1BSR4_XYLCX Length = 712 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 255/584 (43%), Positives = 344/584 (58%), Gaps = 29/584 (4%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 E F LGL A + A+ DLG+ PS IQA+ IP LL GRD+ G+AQTG+GKTAAF LP Sbjct: 47 VEPGFDTLGLPATLEAAVADLGFTTPSAIQAQAIPALLGGRDITGVAQTGTGKTAAFGLP 106 Query: 64 LLQNLDPEL---KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 LL +++ Q LVL PTRELA+QVAEA+ F+ H+ V V+++YGG Y Q R Sbjct: 107 LLASVEAHRGTRPTVQALVLTPTRELAMQVAEAIESFASHLPDVRVLSVYGGSPYVPQQR 166 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 ALR G +VVGTPGR++DHL+RG L L LVLDEADEMLRMGF EDVE I + P Sbjct: 167 ALRDGVHVVVGTPGRVIDHLERGGLVLDDARFLVLDEADEMLRMGFAEDVEKIFSYAPTQ 226 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 Q ALFSATMP AIR I + +P E+ + +T + Q Y V K AL R L Sbjct: 227 RQVALFSATMPPAIRAIADTHLNDPVEIAVARQSSTVASVHQGYAIVPFRHKVGALTRIL 286 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 D DA+I+F RT++A EV AL G ++A ++GD+ Q RE+ +ERL+ G LD+L+ Sbjct: 287 ATSDADASIVFTRTRSAAEEVGAALIEKGISAATISGDVAQKEREKIVERLRSGALDVLV 346 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATDVAARGLDV+RI LVVN+DIP ++E+YVHRIGRTGRAGR GRA+ FV ER L+ I Sbjct: 347 ATDVAARGLDVDRIGLVVNFDIPREAEAYVHRIGRTGRAGRTGRAVSFVTPHERGKLKFI 406 Query: 361 ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELD 420 E T+K+++ E+++P+ + R + + ++ LD Y+ L+ + T +GEE Sbjct: 407 ENTIKVSLEEIDIPSPRDVSAHRAARLLDSAPARTQAGRLDLYKQLVRNLVTTGDGEEAG 466 Query: 421 LETLAAALLKMAQGERTLIVPPDAP-MRPKREFRDRDD---RGPR--------DRNDRGP 468 + A + +A L V D P R ++E +R+ R R + DRG Sbjct: 467 VVDPTKA-VDLAATLLALAVGDDGPRARAEQEEYEREQAEGRAARQARETRKHEIGDRGA 525 Query: 469 RGDR-EDRPRRERRDVGDMQL------------YRIEVGRDDGVEVRHIVGAIANEGDIS 515 RGDR DR RR RD D YR+ VG DGV IVGAI EG ++ Sbjct: 526 RGDRFGDRDRRPARDGDDRSHTRGIRRPAAGTRYRVAVGHKDGVNPGGIVGAITGEGGLT 585 Query: 516 SRYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQL 559 +G I +F S S +++ + G L +R R+ + + + + Sbjct: 586 GADVGKIDIFGSFSLVDITAPLDGAQLDRLSRARVAGRALRLTV 629 >UniRef50_B8J1L5 DEAD/DEAH box helicase domain protein n=3 Tax=Bacteria RepID=B8J1L5_DESDA Length = 595 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 240/548 (43%), Positives = 337/548 (61%), Gaps = 15/548 (2%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +F +LGL +L+A+ D+G+E+PSPIQ +P LL G D G AQTG+GKTAAF LP+L Sbjct: 4 SFEELGLSRELLKAVEDMGFEEPSPIQVLAVPCLLAGNDAFGQAQTGTGKTAAFGLPILD 63 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 L PE + Q L+L PTRELA+QVAE + + H RGV ++ +YGGQ + QLRAL +G Sbjct: 64 KLTPE-RNTQALILCPTRELAIQVAEELNKLAAHKRGVAILPIYGGQPIERQLRALAKGV 122 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 Q+VVGTPGR++DHLKRGTL LS+ S VLDEADEML MGF ED+E I+ Q P Q LF Sbjct: 123 QVVVGTPGRVMDHLKRGTLRLSQASMAVLDEADEMLDMGFREDIEAILEQTPASCQRVLF 182 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SAT+P AIR +++RF++EP+ + + + T P I Q Y+ V +K +AL R L++ F Sbjct: 183 SATVPPAIRELSKRFLREPEMLTVAQKMLTVPAIEQIYYEVRPHQKMDALCRLLDSRAFH 242 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 A++F TK EV L++ GY S +L+G++ Q+ R++ ++R + LD+L+ATDVAA Sbjct: 243 KALVFCSTKRGADEVTTHLQQRGYQSDSLHGNLAQSQRDRVMQRFRAEGLDVLVATDVAA 302 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RGLDV+ + V+NYDIP D E YVHRIGRTGRAGR G A FV RE +R+I R + Sbjct: 303 RGLDVDDVDAVINYDIPHDVEKYVHRIGRTGRAGRVGSAFTFVTMREHYKMRDIIRCTRA 362 Query: 367 TIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGE-ELDLETLA 425 I E LP+ + R + +V+Q +ES L+++ L+ T + E+ ++ Sbjct: 363 RITEGRLPSLRDVDNIRTSRLLDEVRQTVESGTLERWLTLVEDFLATQFPDGEITSRDVS 422 Query: 426 AALLKM------AQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRE 479 AAL K+ ++ L P A + P+R+++DRD G R + G G RP+R Sbjct: 423 AALFKLLMQRDFGDQDKPLDQDPLA-LEPRRQYKDRD--GAPGRREPGKPG---ARPQRR 476 Query: 480 RRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPG 539 D G M + VG R +VGAI E ISSR+IG I + + +E+ + M Sbjct: 477 END-GPMTRLHLNVGHTHKATPRELVGAITGETGISSRHIGAISINKNFCVVEIAQEMAD 535 Query: 540 EVLQHFTR 547 +VL R Sbjct: 536 DVLAVLNR 543 >UniRef50_Q6AMK6 Probable ATP-dependent RNA helicase n=1 Tax=Desulfotalea psychrophila RepID=Q6AMK6_DESPS Length = 632 Score = 411 bits (1057), Expect = e-113, Method: Compositional matrix adjust. Identities = 236/580 (40%), Positives = 343/580 (59%), Gaps = 37/580 (6%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F D LK+ ++ L LG+ +P+PIQ + IP LL G D++G AQTG+GKTAAF LPLL N Sbjct: 57 FTDFNLKSDLVANLVKLGFSQPTPIQEKAIPLLLAGSDLIGQAQTGTGKTAAFGLPLLNN 116 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 +D K Q LVLAPTRELA QV +A+ +S G NV+ +YGG Y Q+ LR+G + Sbjct: 117 IDFSKKCVQALVLAPTRELAQQVGDALATYSGD-DGRNVLVVYGGSSYQAQVGGLRRGAR 175 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 +VVGTPGRLLD +++G+L L +L LVLDEADEML MGFI+D+ETI++Q P+ QT LFS Sbjct: 176 VVVGTPGRLLDLIRQGSLKLDQLKTLVLDEADEMLSMGFIDDIETILSQTPKDRQTMLFS 235 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 AT+ + I R++ P+ + I I Q Y+ + K A+ R E E ++ Sbjct: 236 ATLSSRVMSIANRYLHSPESISISPKQMIGSSIEQRYYLINNSDKIAAITRVFEVETVES 295 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 A+IF RT+ E+A L G+ + L+GD++Q R + L R K G++ +L+ATDVAAR Sbjct: 296 ALIFARTRATVSELANELISRGFAAEGLSGDLSQEARTRVLSRFKKGQIKVLVATDVAAR 355 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 GLD++ IS V NYD+P D E YVHRIGRTGRAGR+G A+ V R+R + R IE+ Sbjct: 356 GLDIDDISHVFNYDLPEDPEVYVHRIGRTGRAGRSGTAISLVTLRDRWMHRRIEQYTGKK 415 Query: 368 IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAA 427 + + ELP E + + R +F ++ + R ++ + + +D +AAA Sbjct: 416 LIKGELPTVEQIEEHRNTQFLERLDVWIRRGRCRGEREIVEALVE----QGMDPLDVAAA 471 Query: 428 LLKMAQGERTLIVPPDAPMRP--------KREFRDRDDRGPRDRNDRG---------PRG 470 LK+ + + T P P++P R+ DR+DRG R DRG P+G Sbjct: 472 ALKIVRKDET--KRPIDPIKPVIEDAGGRNRKRGDRNDRGANGRGDRGGRSDSRGGRPQG 529 Query: 471 DREDR--------PRRERRDV-----GDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSR 517 R+DR P+++ DV DM ++ G+ DGV V HIV ++++ ISSR Sbjct: 530 RRDDRFAKGGDRGPKKKGDDVRQVSDKDMVPLTLDAGKKDGVAVNHIVASLSHFAGISSR 589 Query: 518 YIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNM 557 +G I++ +HS+I++PKG+ ++L H RI K +N+ Sbjct: 590 ELGKIRINETHSSIDVPKGLVDKMLSHNGSYRISKKAVNL 629 >UniRef50_A2SQE1 DEAD/DEAH box helicase domain protein n=17 Tax=cellular organisms RepID=A2SQE1_METLZ Length = 656 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 246/648 (37%), Positives = 357/648 (55%), Gaps = 48/648 (7%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 TFA+ + +L+A+ D+G+E+P+PIQA IP +L+G+DV G AQTG+GKTAAF +P+++ Sbjct: 6 TFAEFAISEELLQAIGDMGFEEPTPIQAMAIPQILDGKDVTGQAQTGTGKTAAFGIPIIE 65 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 LDP+ K Q LVL+PTRELA+Q AE + K+ +G+NVV +YGGQ + QLRAL+ Sbjct: 66 RLDPDNKNVQALVLSPTRELAIQTAEEFSRLMKYKKGLNVVPIYGGQPIERQLRALKGTV 125 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 Q+V+GTPGR++DH+KRGTL L ++ +LDEAD+ML MGF ED+E I P+ QT LF Sbjct: 126 QVVIGTPGRVIDHIKRGTLHLDSVTMFILDEADQMLDMGFREDIEDIFRDTPKDRQTILF 185 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SATMP+ I ITRRF ++PQ V+I T P I Q+Y V K EAL R L+ + + Sbjct: 186 SATMPQPILDITRRFQRDPQFVKITRKELTVPQIEQTYIEVRERDKLEALCRTLDMNNPE 245 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 A++F TK ++ ++ GY AL+GDM Q R++ + R + G +D+LIATDVAA Sbjct: 246 LALVFCNTKRTVDDLMSRMQARGYFVEALHGDMKQQQRDRVMARFRSGSIDVLIATDVAA 305 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RG+DV+ + +V NYD+P D E YVHRIGRT RAGR G+++ FV RE LR+I+R K+ Sbjct: 306 RGIDVDDVDIVFNYDVPQDVEYYVHRIGRTARAGRTGKSVTFVAPREIYKLRDIQRYAKI 365 Query: 367 TIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPT------AEGEELD 420 I + LP + + + + + F KV+ + + +L+ Y L+ ++ T E+ Sbjct: 366 QIAKTPLPTLDDVAEMKQQIFLDKVRDIMAAGNLELYLPLVEQLLETETDVDSESTSEIT 425 Query: 421 LETLAAALLKMA--QGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRR 478 +AAALLKM G+ P++P + G + + P Sbjct: 426 SIQVAAALLKMHLDSGKNAAQSEEIKPLQPSPSSSETFTPGTVENSGAEP---------- 475 Query: 479 ERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMP 538 M +RI +G++ + + IVGA A E DI IG I L+ ++S +++P Sbjct: 476 ------GMVRFRISLGKNQQIRPKDIVGAFAGECDIPGSSIGRIDLYNNYSYVDVPLEHA 529 Query: 539 GEVLQHFTRTRILNKPMNMQLLGDAQPHTGGER----------------RGGGRGFG-GE 581 V + I + + + + P R G R G GE Sbjct: 530 NLVAEVMGSKTIRGQELEISIAAPRTPEEEERERDRDRSGDRRGGSSGYRSGDRNSGSGE 589 Query: 582 RREGGRNFSGERREGGRGDGRRFSGERREGRAPRR----DDSTGRRRF 625 RR N G RG SG+R G RR S+ RR F Sbjct: 590 RRSYNNNRGS---YGSRGGSNYRSGDRSSGSGERRSYGNSGSSDRRSF 634 >UniRef50_D0WN23 ATP-dependent RNA helicase DeaD n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WN23_9ACTO Length = 767 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 249/600 (41%), Positives = 348/600 (58%), Gaps = 36/600 (6%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F DLGL +L A+ +LG+ P+ IQA IP LL GRDV+G+AQTG+GKTAAF+LPLL + Sbjct: 129 FDDLGLPEDLLSAVKELGFSAPTAIQAAAIPILLRGRDVVGVAQTGTGKTAAFALPLLAH 188 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 +DPE + Q LVLAPTRELA+Q A+A+ F+ RGV+V A+YGG Y QL+AL G Q Sbjct: 189 IDPEKREVQALVLAPTRELAMQGAQAIESFAAKSRGVDVAAVYGGSSYLPQLKALEGGAQ 248 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 +VVGTPGR++D + RG L L + VLDEADEMLRMGF EDVE I +++PEG +ALFS Sbjct: 249 VVVGTPGRIMDLMDRGALRLDAVRYFVLDEADEMLRMGFAEDVEKIASEVPEGRISALFS 308 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 ATMP IRR+ R + + +EV I TT + Q Y V K AL R L + A Sbjct: 309 ATMPPPIRRVAERHLSDAEEVTISRPATTVSTVKQMYAVVPERHKIGALARVLAVTEAQA 368 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 A++FVRT++ ++ L G +AAL+GD+ Q RE+ + RL+DG LD+L+ATDVAAR Sbjct: 369 ALVFVRTRSTAEDLTIELGARGVATAALSGDVVQKEREKLVARLRDGTLDVLVATDVAAR 428 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 GLDV+RI LVVN+D+P ++++YVHRIGRTGRAGR G ++ FV +ER LR IE+ Sbjct: 429 GLDVDRIGLVVNFDVPRETDTYVHRIGRTGRAGRTGESITFVTPKERPRLRRIEKQTGSR 488 Query: 368 IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAA 427 + ++ELP + K R + + ++ L Y +L AE + ++ + A Sbjct: 489 MEQIELPTPAEVSKLRARRTVEQAMARVAKGRLWVYEEILEDF--VAEQAKAAAQSGSGA 546 Query: 428 LL-KMAQGERTLIVPPDAPMR-PKREFRDRDDRGPRDRN------------DRGPRG--- 470 L G + P+ P + +D GP D GP Sbjct: 547 HLDSHEHGSDSYSQHDSHPLSDPGSQLDSKDQAGPVSLETLTMALLALAVRDPGPVAGEE 606 Query: 471 ----------DREDRPRRE---RRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSR 517 +RE RPR+E RR + + YR+EVG D V+ IVGA+ +EG +S Sbjct: 607 PERLTEDFGSEREGRPRKERQPRRQMKNSVRYRVEVGHKDRVKPGAIVGALTHEGGLSGS 666 Query: 518 YIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRG 577 +G+I +F + S +E+ + E + ++ R+ + + + D P GG R GRG Sbjct: 667 DLGHIDIFPTFSLVEIGVPLSPEARKRISQARVSGRALKISE--DRGP--GGFRDDAGRG 722 >UniRef50_Q81IT9 DEAD-box ATP-dependent RNA helicase cshA n=84 Tax=cellular organisms RepID=CSHA_BACCR Length = 533 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 210/432 (48%), Positives = 292/432 (67%), Gaps = 10/432 (2%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 TTF +LGL +L+++ +G+E+ +PIQAE IPH L G+D++G AQTG+GKTAAF LPLL Sbjct: 2 TTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL 61 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 +D ++ Q +V+APTRELA+QV E + KH R V ++ +YGGQ + Q+RAL++ Sbjct: 62 DKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKR-VRILPIYGGQDINRQIRALKKH 120 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 P I+VGTPGR+LDH+ R TL L + +VLDEADEML MGFIED+E I+ +PE HQT L Sbjct: 121 PHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSATMP+ IRRI RFM EPQ +++++ T P+I Q Y V +K + L R L+ + Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSP 240 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 + AI+F RTK E++EAL GY + ++GD+ QA R L + K+G +++L+ATDVA Sbjct: 241 ELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVA 300 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARGLD+ ++ V N+DIP D ESYVHRIGRTGRAG+ G A+LFV RE L+NIERT K Sbjct: 301 ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTK 360 Query: 366 LTIPEVELPNAE--LLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLET 423 + ++ P + L G++RL A K+Q +E+ +L Y+ + ++ EE D T Sbjct: 361 RKMDRMDAPTLDEALEGQQRL--IAEKLQSTIENENLAYYKRIAEEML-----EENDSVT 413 Query: 424 LAAALLKMAQGE 435 + AA LKM E Sbjct: 414 VVAAALKMMTKE 425 >UniRef50_C5RIK3 DEAD/DEAH box helicase domain protein n=3 Tax=Clostridia RepID=C5RIK3_CLOCL Length = 536 Score = 401 bits (1030), Expect = e-110, Method: Compositional matrix adjust. Identities = 222/556 (39%), Positives = 336/556 (60%), Gaps = 33/556 (5%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 TF +L LK IL+A+ND+G+E+PSPIQ+E IP + G D++G AQTG+GKTAAF +L Sbjct: 6 TFNELNLKDEILKAINDMGFEEPSPIQSESIPVGIEGYDLIGQAQTGTGKTAAFGSIILN 65 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 N+ + + PQ L+LAPTRELA+QV E + +K+MR +N++ +YGGQ D QLRALR G Sbjct: 66 NMSEKRRVPQALILAPTRELAIQVNEELVRIAKNMR-LNILPIYGGQPIDRQLRALRNGV 124 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 IVVGTPGR+LDHL+R +L+ + LVLDEADEML MGFI+D+E +M + E QT LF Sbjct: 125 DIVVGTPGRVLDHLRRKSLNTEFVKFLVLDEADEMLNMGFIDDIEEVMKSLNEDRQTLLF 184 Query: 187 SATMPEAIRRITRRFMK-EPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 SATMP+AI+R+++R+MK + + + I+ + T I+Q Y+ + + E+L R ++A++ Sbjct: 185 SATMPDAIKRLSKRYMKSDAKLISIEKNTVTASTITQYYYEIKNSDRFESLCRIIDADEP 244 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 +AAIIF +TK E+ +++R GY ++GDMNQ R TL++ K+ LD L+ATDVA Sbjct: 245 EAAIIFCKTKKGVDELVSSMQRRGYVVEGMHGDMNQNQRMNTLKKFKESNLDFLVATDVA 304 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARG+DVE ++ V+NYD+P D+ESYVHRIGRTGRA + G+A V RE +L+ IE+T K Sbjct: 305 ARGIDVENVTHVINYDLPQDAESYVHRIGRTGRANKEGKAYTLVTPREYIVLKQIEKTTK 364 Query: 366 LTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAE--GEELDLET 423 I +P + + + + KV+ +E+ D LSK P A ++ L Sbjct: 365 SKIKRNSVPTVDEIYDVKYKNVLNKVRDTIENED-------LSKFIPYATELDDDYSLVD 417 Query: 424 LAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDV 483 +AAAL+K+A + R+ RG RG + Sbjct: 418 VAAALMKIAFSNELAYEYTTNALEVPEPMRNSSARG-------ASRGQK----------- 459 Query: 484 GDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQ 543 +L+ + GR D V + +V + I R IG+I + + S + + + ++L+ Sbjct: 460 ---RLF-VSAGRRDNVSPKELVQFFKDSSRIQPRQIGDIAIMENFSFVNVDTSIVDDILK 515 Query: 544 HFTRTRILNKPMNMQL 559 + R+ + +N+++ Sbjct: 516 FSSGKRLKGRKINIEV 531 >UniRef50_B0TII3 Dead/deah box helicase n=18 Tax=Bacteria RepID=B0TII3_HELMI Length = 540 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 225/542 (41%), Positives = 331/542 (61%), Gaps = 37/542 (6%) Query: 2 AEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFS 61 A+ + F ++ L + +A+ D+G+E+PSPIQA+ IP ++ G+D++G AQTG+GKTA F Sbjct: 14 AKDKVKFGEIELSPKVAKAIFDMGFEEPSPIQAKAIPVIMQGKDLIGQAQTGTGKTATFG 73 Query: 62 LPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 +P+ + L+P Q LVL PTRELA+QVA+ ++ + + + +YGGQ D Q+RA Sbjct: 74 IPMAETLNPRDGRVQALVLCPTRELAIQVAQEISKIGRQ-NDLKALPVYGGQSIDRQIRA 132 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 LR G Q+V+GTPGR+LDHL R TL L+ + +VLDEADEML MGF+ED+E I+ + PE Sbjct: 133 LRYGVQVVIGTPGRILDHLSRKTLRLNNVRMVVLDEADEMLDMGFVEDIEAILKETPEER 192 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 QT LFSATMP I+++ R++MKEP+ V I T P I Q Y+ +K +AL R L+ Sbjct: 193 QTLLFSATMPGPIQQLARQYMKEPEFVTISRDKLTVPLIEQVYYECKESQKVDALCRILD 252 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 E+ ++IIF RTK E+ ALE GY + L+GD+ QA R++ +++ +DG+ ++LIA Sbjct: 253 MEEIGSSIIFCRTKRGVDELVAALETRGYFAEGLHGDLTQAQRDRVMKKFRDGKAELLIA 312 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 TDVAARGLDVE ++ V+NYDIP D ESYVHRIGRTGRAGR G A+ + RE R L+ IE Sbjct: 313 TDVAARGLDVENVTHVINYDIPQDPESYVHRIGRTGRAGRKGIAITLINYREYRQLKLIE 372 Query: 362 RTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDL 421 R K I +LP+ + +R+ E K+ + L+ +Y++++S++ EE D Sbjct: 373 RVTKARIQRRDLPSMADIVERQKEAHKMKIVKLLDGGHFGEYKSIISEL-----AEEYDP 427 Query: 422 ETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPR-GDREDRPRRER 480 +AAA LK+ LI P+A D P G+ P Sbjct: 428 MEIAAATLKL------LIEGPEA----------------ETEKDEAPEFGNTGAEP---- 461 Query: 481 RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGE 540 G ++L+ + +GR G+ + IV AIA E I IG I ++ + +E+P+ + G Sbjct: 462 ---GMVRLF-MNIGRAQGIRPQDIVRAIAEEAGIPGNVIGVINIYDKFTFVEVPEDVAGR 517 Query: 541 VL 542 V+ Sbjct: 518 VM 519 >UniRef50_D2RJY3 DEAD/DEAH box helicase domain protein n=2 Tax=Firmicutes RepID=D2RJY3_ACIFE Length = 544 Score = 398 bits (1023), Expect = e-109, Method: Compositional matrix adjust. Identities = 227/554 (40%), Positives = 337/554 (60%), Gaps = 35/554 (6%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 T+F DL L IL AL ++G+E+PSPIQ IP L G D++G AQTG+GKTAAF +P++ Sbjct: 19 TSFEDLNLDRKILAALKEMGFEEPSPIQKGAIPMALEGEDLIGQAQTGTGKTAAFGIPII 78 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 Q ++ + + Q LV++PTREL +QVA+ ++ K R + V+ +YGGQ + Q+R+L++G Sbjct: 79 QKINEKDRHIQALVMSPTRELCIQVADEISKIGKTKR-IRVLPVYGGQPIERQIRSLKRG 137 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 Q+V+GTPGRLLDH++RGT+DL ++ LVLDEADEML MGF++D+E I+ +P QT L Sbjct: 138 IQVVIGTPGRLLDHIRRGTIDLEYVNFLVLDEADEMLDMGFVDDMENIIKNVPPERQTML 197 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSATMP I I++++M+ P+ V I V T P I Q Y+ K + L R L+ D Sbjct: 198 FSATMPRPILSISKKYMRAPKVVAIHKEVVTAPTIDQYYYETRD--KVDGLCRILDTTDD 255 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 IIF RTK E+ AL GY + L+GD++Q R++ +++ + G++DIL+ATDVA Sbjct: 256 CKMIIFCRTKKGVDELVIALATRGYEAEGLHGDLSQNQRDRVMKKFRSGQVDILVATDVA 315 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARGLD++ I+ VVN+D+P DSESYVHRIGRTGRAG G AL F+ RE R L+ IER++K Sbjct: 316 ARGLDIDNITHVVNFDVPSDSESYVHRIGRTGRAGNTGVALTFITPREFRQLKLIERSIK 375 Query: 366 LTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLA 425 I LP + +R+ E+ +K+Q LE Y ++ ++ ++ D++ +A Sbjct: 376 TKIIRGTLPTDASVLERQREQIVSKMQTILEQDRYQDYLPIVETLE-----KDYDVQDIA 430 Query: 426 AALLK-MAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVG 484 AA LK M +G + L P + ++ P + G + G Sbjct: 431 AAALKFMQEGAKALEEPAE------------EESLPDALANTGAKP-------------G 465 Query: 485 DMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQH 544 ++L+ + +GR V VR IV +IA E +I +R IG I ++ S +E+P +VL Sbjct: 466 MVRLF-VNIGRSSRVTVRDIVQSIAIEAEIPARSIGRISIYDKFSFVEVPMEHAEKVLAV 524 Query: 545 FTRTRILNKPMNMQ 558 R I +NM+ Sbjct: 525 MHRNTIRGCRVNME 538 >UniRef50_C5EJJ1 DEAD/DEAH box helicase domain-containing protein n=7 Tax=cellular organisms RepID=C5EJJ1_9FIRM Length = 572 Score = 398 bits (1022), Expect = e-109, Method: Compositional matrix adjust. Identities = 229/565 (40%), Positives = 335/565 (59%), Gaps = 19/565 (3%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F +L L I+ A+ ++G+E+ SPIQA+ IP + GRD++G AQTG+GKTAAF +PLLQ Sbjct: 6 FDELQLDERIIRAITEMGFEEASPIQAQAIPVAMEGRDMIGQAQTGTGKTAAFGIPLLQK 65 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 +DP++K Q ++L PTRELA+QVAE M +K M G V+ +YGGQ Q+R+L+ G Q Sbjct: 66 VDPKVKKLQAIILLPTRELAIQVAEEMRRLAKFMHGTKVLPIYGGQDIVKQIRSLKDGTQ 125 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 IVVGTPGR++DH++R T+ + + +VLDEADEML MGF+ED+ETI++Q+PE QT +FS Sbjct: 126 IVVGTPGRVMDHMRRKTVKMDHVHTVVLDEADEMLNMGFLEDMETILSQLPEERQTLMFS 185 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 ATMP+AI I R+F +P VR+ T P ++Q Y+ V K E + R L+ Sbjct: 186 ATMPQAIADIARKFQDDPVTVRVIKKELTVPKVTQYYYEVKPKNKVEVMCRLLDMYAPKL 245 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 +I+F TK E+ +AL+ GY + L+GD+ Q R++ + ++GR DIL+ATDVAAR Sbjct: 246 SIVFCNTKRQVDELVQALQGRGYFAEGLHGDLKQVQRDRVMGSFRNGRTDILVATDVAAR 305 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 G+DV + V NYD+P D E YVHRIGRTGRAGR G+A V +E LR+I+R K Sbjct: 306 GIDVGDVEAVFNYDVPQDDEYYVHRIGRTGRAGREGKAFSLVVGKEVYKLRDIQRYCKTK 365 Query: 368 IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAA 427 I +P+ + + ++EK +V L +DL + ++ K + +D LAAA Sbjct: 366 IIPQAIPSLNDITEIKVEKVLDQVMDILNDNDLTKMVNIIEKKLIEEDYTSMD---LAAA 422 Query: 428 LLKMAQGERTLIVPPDAPMRPKREFRDRDD------------RGPRDRNDRGPRGDREDR 475 LLKM G+ V D M P R D D RG RG RG + Sbjct: 423 LLKMNMGDDNEDV-IDCTM-PARSLDDLDSYGRGMGRGRGRERGSSSAYGRGRRGATDRA 480 Query: 476 PRRERRDVGDMQLYR--IEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIEL 533 GD Q+ R I +G+ V I+GA+A E I R +G+I ++ ++ +++ Sbjct: 481 AIDYVLGEGDGQMARLFINIGKAQRVTPGDILGAVAGESGIPGRMVGSIDMYDGYTFVDV 540 Query: 534 PKGMPGEVLQHFTRTRILNKPMNMQ 558 P EVL+ + +I + ++++ Sbjct: 541 PGQYADEVLKAMSHAKIKGRNVHVE 565 >UniRef50_C5C5R9 DEAD/DEAH box helicase domain protein n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5C5R9_BEUC1 Length = 589 Score = 397 bits (1021), Expect = e-109, Method: Compositional matrix adjust. Identities = 203/400 (50%), Positives = 268/400 (67%) Query: 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 E +F DLGL +L+A+ LG+ P+PIQ IP LL+GRD++G+AQTG+GKTAAF LPL Sbjct: 19 EPSFDDLGLPQALLDAVTGLGFTTPTPIQTAAIPALLSGRDLVGVAQTGTGKTAAFGLPL 78 Query: 65 LQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 L +DP+L A Q LVL PTRELA+QV++A+ F GV V+ +YGG + QLR L + Sbjct: 79 LAAVDPQLAAVQALVLTPTRELAIQVSDAVASFVPSGAGVKVLPIYGGASFVPQLRGLER 138 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 G Q+VVGTPGR++D L+RG+LDL L LVLDEADEMLRMGF EDV+ I+A+ P Q A Sbjct: 139 GAQVVVGTPGRVIDLLERGSLDLDALRYLVLDEADEMLRMGFAEDVDVILAKTPATKQVA 198 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 LFSATMP IR++ ++ P+E+ + T ++Q+Y V K EAL R L D Sbjct: 199 LFSATMPPPIRKVAETHLRNPEEIAVARQATPIAAVTQTYAIVPYRNKAEALSRVLATSD 258 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 DAAI+FVRT+ EV AL G N+A+++GD+ Q RE+ +ERL+ G LD+L+ATDV Sbjct: 259 ADAAIVFVRTRETAEEVGTALASRGINAASISGDVAQRERERIVERLRSGALDVLVATDV 318 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 AARGLDVERI LVVN+D+P + E+YVHRIGRTGRAGR G AL F+ +E+ LR IER Sbjct: 319 AARGLDVERIGLVVNFDVPREVETYVHRIGRTGRAGRTGNALTFLTPKEKPRLRTIERVT 378 Query: 365 KLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYR 404 + E +P + R A +L + D+ +R Sbjct: 379 GSRLVEATIPTNAEVAAHRTGAALATAHARLGAGDVSAHR 418 >UniRef50_C8WWM6 DEAD/DEAH box helicase domain protein n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WWM6_ALIAD Length = 541 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 225/557 (40%), Positives = 331/557 (59%), Gaps = 37/557 (6%) Query: 2 AEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFS 61 E ++F GL +L+A++D+G+E+PSPIQA CIP +L GRDV+G AQTG+GKTAAF Sbjct: 13 VESMSSFESFGLNRRVLQAIHDMGFEEPSPIQAACIPVVLEGRDVIGQAQTGTGKTAAFG 72 Query: 62 LPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 +PL++ + E + Q +VL PTRELA+QVA + +K+ R V V +YGGQ Q+RA Sbjct: 73 IPLVERVSTEPRV-QAIVLTPTRELAIQVAGEIRKIAKYKR-VRSVPIYGGQSIVHQIRA 130 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 L+QG QIV+GTPGR+LDH+ RGTL LS + +VLDEADEML MGFI+D+E I+ + P Sbjct: 131 LKQGVQIVIGTPGRVLDHIHRGTLSLSDVRMVVLDEADEMLDMGFIDDIEAILRETPSDR 190 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 QT LFSAT P ++R+ R+M++PQ + + T P I Q + V K ++L R ++ Sbjct: 191 QTMLFSATFPNEVKRLALRYMRDPQHITVNRGEVTVPQIDQVCYKVLERNKLDSLCRIVD 250 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 +ED IIF RTK ++ EAL GY + L+GD++QA R++ + + + +++L+A Sbjct: 251 SEDIQLGIIFCRTKRGVDDLVEALLARGYLADGLHGDLSQAQRDRVMRKFRKNEIELLVA 310 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 TDVAARGLDV+ ++ V+NYD+P D ESYVHRIGRTGRAG+ G A+ V RE +LL+ IE Sbjct: 311 TDVAARGLDVDDVTHVINYDVPQDPESYVHRIGRTGRAGKRGLAITLVTPREYKLLKQIE 370 Query: 362 RTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDL 421 R +K I E+P+ E + +R+ E + +K+ + L YRA+LS + +E D Sbjct: 371 REIKQKITVREVPSLEDVAERQAEMWRSKIVDVIREGGLAPYRAILSGLV-----DEHDP 425 Query: 422 ETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERR 481 +A+ALLK+A G R +D GD RP Sbjct: 426 IDIASALLKLASS----------------------GDGNRTESDEYDFGDTGARP----- 458 Query: 482 DVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEV 541 M + + VGR + + V AI+ E + +G I +F + IE+ + V Sbjct: 459 ---GMVRFFVNVGRTSRMSPQDFVRAISEEAGVPGDAVGRIDMFEKFTFIEVEEESAPFV 515 Query: 542 LQHFTRTRILNKPMNMQ 558 + ++RI +N++ Sbjct: 516 YEALRQSRINGTRVNLE 532 >UniRef50_C6VX00 DEAD/DEAH box helicase domain protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VX00_DYAFD Length = 590 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 232/587 (39%), Positives = 342/587 (58%), Gaps = 40/587 (6%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 TF +LGL IL+AL ++G+EKPSPIQA+ IP +L G DV+G AQTG+GKTAAF +P+L+ Sbjct: 8 TFEELGLNENILKALQEMGFEKPSPIQAQGIPAVLQGSDVIGQAQTGTGKTAAFGIPVLE 67 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 +D A Q L+L PTRELAVQV+E + SK MRGV + A+YGG D Q+R+L++G Sbjct: 68 RIDTSSNAVQALILCPTRELAVQVSEELGRLSKFMRGVRIEAIYGGDSIDRQIRSLKKGV 127 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 IVVGTPGR++DH++R TL ++ +VLDEADEML MGF ED+E+I+A +PE QT LF Sbjct: 128 HIVVGTPGRVMDHMERRTLKFDEVRMMVLDEADEMLDMGFREDIESILADMPEDRQTILF 187 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SATM + I IT+RF+ +P +++ + T +I Q Y+ V K E + R ++ Sbjct: 188 SATMSKPIMSITKRFLNDPTLIKVVRNELTNQNIEQVYFEVKPQAKVEVMTRLIDMHHIK 247 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 + ++F TK E+ E L+ GY S ++GD+ Q R + + K G IL+ATDVAA Sbjct: 248 SLLVFCNTKRKVDEIVEDLQLRGYASEGIHGDLRQQQRSNVMSKFKAGVTTILVATDVAA 307 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RG+DV + V+NYDIPMD E YVHRIGRTGRAG +G+A V E+ L++IE K+ Sbjct: 308 RGIDVSGLDGVINYDIPMDEEYYVHRIGRTGRAGMSGKAFSLVARDEKYRLKSIESYTKV 367 Query: 367 TIPEVELPNAELLGKRRLEKFAAKVQQQL-ESSDLDQYRALLSKIQPTAEGEELDLETLA 425 I + +P+ E + R +F + + ES+D + Y +L + + E + +A Sbjct: 368 KIEKGVIPSFEDIVGVRKARFVENISNSIKESNDEELYNDVLEMLHHSGFSTEQIVGAMA 427 Query: 426 AALLKMAQGERTLIVPPDAPM----------------------RPKREFRDRDDRGPRDR 463 ++ + + E + D+ + R F DR + G R Sbjct: 428 KQIMGVQKNEYS-----DSNLAWEERRSERREGGNDRFGRGERREGGRFGDRREGGSRFG 482 Query: 464 NDRG-----PRGDREDR--PRRERR----DVGDMQLYRIEVGRDDGVEVRHIVGAIANEG 512 +DRG PRG+R DR R ERR + G +L+ + +GR D + + IVGAIA E Sbjct: 483 SDRGGDRYAPRGERGDRGGDRGERRQSAPEAGMTRLF-LSLGRKDHIMPKDIVGAIAGEA 541 Query: 513 DISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQL 559 +I + IG I ++ + +++P+ VL+ I KP+ + + Sbjct: 542 NIPGKTIGAIDIYDKFTFVDVPERDARAVLRAMDGNTIKGKPVQIDI 588 >UniRef50_D2QD85 DEAD/DEAH box helicase domain protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QD85_9SPHI Length = 643 Score = 395 bits (1015), Expect = e-108, Method: Compositional matrix adjust. Identities = 228/613 (37%), Positives = 342/613 (55%), Gaps = 65/613 (10%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F+ L + +L+A+ D+G+ PSPIQAE IP +L+GRDV+G AQTG+GKTAAF +P L Sbjct: 33 FSSLAISPELLQAVTDMGFISPSPIQAEAIPPILDGRDVIGQAQTGTGKTAAFGIPALDL 92 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 +D + ++ Q L+L PTRELA+QVAE + +K+ RG+ + A+YGG + Q+R+L+ G Sbjct: 93 IDVQDRSVQTLILCPTRELALQVAEEIKKLAKYKRGIRIEAIYGGDSIERQIRSLKSGVH 152 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 IV+GTPGR++DH++R TL L+ + ++LDEADEML MGF ED+E+I+ ++PE QT LFS Sbjct: 153 IVIGTPGRVMDHMERNTLKLNNVKMMILDEADEMLDMGFREDIESILEEMPEERQTILFS 212 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 ATM + I +IT++F K+P V++ T +I Q Y+ V K E + R ++ D Sbjct: 213 ATMSKPIMQITQKFQKDPVLVKVVKKELTNVNIEQVYFEVKSKAKVEVMCRLIDMYDLKL 272 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 ++F TK E+ E L+ GY + L+GD+ QA R + + + G +IL+ATDVAAR Sbjct: 273 LLVFCNTKRKVDEIVEDLQIRGYQAEGLHGDLRQAQRNNVMSKFRAGTTNILVATDVAAR 332 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 G+DV+ + V+N+DIP+D E YVHRIGRTGRAG++GRA FV E+ R I+ K+ Sbjct: 333 GIDVDDVDAVINFDIPLDEEYYVHRIGRTGRAGKSGRAFSFVGRDEKYRFREIQTYTKVK 392 Query: 368 IPEVELPNAELLGKRRLEKFAAKVQQQL-ESSDLDQYRALLSKIQPTAEGEELDLETLAA 426 + + +P+ E + R +F ++QQ + ES DL+ Y LL+++ E + A Sbjct: 393 VEKGVIPSFEDIVGVRKARFIEQLQQTIQESKDLNLYDDLLTQLNHAG----FSTEQIVA 448 Query: 427 ALLKMAQG-ERTLIVPPDAPMRPKR--------------------------EFRDRDDRG 459 AL+K + G E+ + + R F DRD+RG Sbjct: 449 ALVKRSMGLEKNEFADQNLNLEDDRRNGRDKYADRGRGEGGGRFEDRRGGSRFGDRDERG 508 Query: 460 PRDR-------NDRGP------RGDREDRPRRERRD--------------------VGDM 486 R DRG R D DRPR RD +M Sbjct: 509 NSSRFGDRREGGDRGGSRFGDRRSDGGDRPRFNDRDRSGTGKPYFDRDDQRVPREREANM 568 Query: 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFT 546 + +GR D V IVGAIA E +I IG+I +F + +++PK + V+ Sbjct: 569 TRLMVSIGRKDFVRPGDIVGAIAGEANIPGNSIGSIDIFDKFTYVDVPKDVANRVVDAME 628 Query: 547 RTRILNKPMNMQL 559 I + +N+++ Sbjct: 629 GNTIKGRRVNIEV 641 >UniRef50_Q725W5 ATP-dependent RNA helicase, DEAD/DEAH family n=3 Tax=Desulfovibrio vulgaris RepID=Q725W5_DESVH Length = 532 Score = 390 bits (1002), Expect = e-107, Method: Compositional matrix adjust. Identities = 230/537 (42%), Positives = 324/537 (60%), Gaps = 39/537 (7%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +F DL L+ +L+A+ +LG+ +PSPIQ+ IP LL GRDV+G AQTG+GKTAAF LPLLQ Sbjct: 6 SFKDLPLEEELLKAIEELGFTEPSPIQSIAIPRLLEGRDVIGQAQTGTGKTAAFGLPLLQ 65 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 +D ++ Q LVL PTRELA+QVA +T +KH+RGV ++++YGGQ + Q ALR+G Sbjct: 66 RIDAADRSVQALVLCPTRELALQVANGLTALAKHLRGVRILSVYGGQPIEPQASALRRGA 125 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 Q+VVGTPGR+LDH+ RGTL L + VLDEADEML MGF ED+E I++++PE Q+A F Sbjct: 126 QVVVGTPGRILDHINRGTLQLGVVRMTVLDEADEMLDMGFREDIERILSEMPEWVQSAFF 185 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SATMP+ I + RRF++EP+ +R+ T + Q+++ V R+ +A+ R +A Sbjct: 186 SATMPDGILELARRFLREPELLRVTRRQLTVANTEQAWFEVRPFRRVDAVCRIFDAYIPR 245 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 AI+F TK E+A AL++ G + AL+GD+NQ RE+ + R + G + +L+ATDVAA Sbjct: 246 KAIVFRATKQGVDELAAALQQRGILADALHGDLNQTQRERVMSRFRAGGISVLVATDVAA 305 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RGLDV+ + V+N+D+P D E+YVHRIGRTGRAGR GRA F R+ LR+I+R Sbjct: 306 RGLDVDDVDTVINFDLPNDPETYVHRIGRTGRAGRTGRAFSFAAGRDVYKLRDIQRVTGS 365 Query: 367 TIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAA 426 I +P A + R + +V L S++ ++ K+ AEG D LAA Sbjct: 366 RIDRRAMPTAADASRARTGQLLEEVAAGLASAETSACLPVVEKL--IAEGA--DPTQLAA 421 Query: 427 ALLKMAQGERTLIVPPDAPMRPKREFRDRDDR-GPRDRNDRGPRGDREDRPRRERRDVGD 485 LL+M RDR D G R +D G G Sbjct: 422 TLLRMIMQ------------------RDRIDLPGARQTDDIG---------------TGR 448 Query: 486 MQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVL 542 ++L+ VGR + R +VGAIA E IS R IG+I++ S +E+ + EV+ Sbjct: 449 VRLF-FNVGRRMRITPRDLVGAIAGETGISGRSIGSIEIHDRFSFVEVDASIAPEVV 504 >UniRef50_Q7NHM7 Gll2508 protein n=1 Tax=Gloeobacter violaceus RepID=Q7NHM7_GLOVI Length = 437 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 210/432 (48%), Positives = 294/432 (68%), Gaps = 10/432 (2%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 T F+ LGL +++AL++LG+E+P+PIQ + IP LL+GRD+L AQTG+GKTAAF LPL+ Sbjct: 3 TAFSALGLSESVVKALDELGFEQPTPIQLKSIPFLLDGRDLLAQAQTGTGKTAAFGLPLV 62 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 DP+ Q LVLAPTRELAVQV EA+ +SKH GV V+ +YGGQ D Q+R LR G Sbjct: 63 DRSDPQDARVQALVLAPTRELAVQVCEAIHTYSKH-SGVRVLPIYGGQPIDRQMRRLRAG 121 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 QIVVGTPGR+LD ++RG+LDLS L LVLDEAD+ML MGFIE+V+TI+ P Q Sbjct: 122 AQIVVGTPGRVLDLMRRGSLDLSALRTLVLDEADQMLDMGFIEEVQTILDAAPPERQLVF 181 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSAT+P +IR++ R ++ P + + + P I+Q + V + +AL R L AED Sbjct: 182 FSATLPASIRKLAARHLRTPMTLTMPAEERDTPAIAQRVYFVNFKNRAQALTRVLAAEDP 241 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 +A+IF RTK A E+AE L+ +G+ + AL+GD+NQ+ RE L R + +L++++ATDVA Sbjct: 242 ASALIFTRTKQAADELAEQLQDDGHRAEALHGDLNQSAREAVLGRFRRQQLNVVVATDVA 301 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARGLD+ +S V+NYD+P D ESY+HRIGRTGRAGR G A+ F +R LR IER Sbjct: 302 ARGLDIADLSHVINYDMPQDGESYIHRIGRTGRAGRTGVAISFALPTDRYRLRLIERATG 361 Query: 366 LTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQ----YRALLSKIQPTAEGEELDL 421 T+ ++P+A + RR E+ ++++QL++ + D YR ++ +++ EE DL Sbjct: 362 STLVPAKIPSAGEIQVRRTERLVEQLRRQLQADESDPSLVLYREVVGQLR-----EEFDL 416 Query: 422 ETLAAALLKMAQ 433 +AA LK+AQ Sbjct: 417 GDIAATFLKLAQ 428 >UniRef50_D2LSA7 DEAD/DEAH box helicase domain protein n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LSA7_BACS4 Length = 528 Score = 381 bits (978), Expect = e-104, Method: Compositional matrix adjust. Identities = 215/553 (38%), Positives = 324/553 (58%), Gaps = 40/553 (7%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F D + I +A+ D+G+E PSPIQ + IP +L G DV+G AQTG+GKTAAF +PLL+ Sbjct: 4 FEDFQISNDIKKAIKDMGFEAPSPIQEKVIPEILKGHDVIGQAQTGTGKTAAFGIPLLEK 63 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 + + + Q L+L PTRELA+QVA + SK R ++ +YGGQ Q++AL++G Q Sbjct: 64 VTSDRQV-QSLILTPTRELAIQVAGELQKLSKFKRS-QILPIYGGQSIGHQIKALKRGVQ 121 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 +VVGTPGR+LDHL R TL L + L+LDEADEML MGFIED+E I+ Q+ QT LFS Sbjct: 122 VVVGTPGRVLDHLNRKTLQLRSVHTLILDEADEMLDMGFIEDIEKILQQVNTNRQTMLFS 181 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 ATMP IR+++ ++M P++V I T P I+Q Y+ V K ++L R +++E D Sbjct: 182 ATMPPPIRKLSNKYMNNPKQVTISKGEVTAPSINQVYFKVLEKNKLDSLCRVIDSETIDL 241 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 IIF RTK E+ EAL+ GY + L+GD+ Q+ R+ +++ +D ++ LIATDVAAR Sbjct: 242 GIIFCRTKKGVAELTEALQARGYMADGLHGDLTQSQRDIVMKKFRDSSIEFLIATDVAAR 301 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 G+DVE +S V+NYDIP D ESYVHRIGRTGRAGR G A+ V RE + LR+IE +K+T Sbjct: 302 GIDVENVSHVINYDIPQDPESYVHRIGRTGRAGREGVAVTLVTPREMKHLRSIEAEIKMT 361 Query: 368 IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQ--YRALLSKIQPTAEGEELDLETLA 425 IP +P+ E + +++ + ++ +ES + D Y L+S + + + Sbjct: 362 IPSQRIPSVEEVVEKQQHVWKGQIIDLIESEEDDAGLYDDLVSDLL-----NQYPPNKIV 416 Query: 426 AALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGD 485 A+LLK+A F +D D D G G ++ R Sbjct: 417 ASLLKLA-------------------FYSHEDLN-DDGYDFGDTGAQKGMTR-------- 448 Query: 486 MQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHF 545 + I VGR+ + + + ++ I ++ +G I +F + + +E+P+ + V + Sbjct: 449 ---FFINVGRNIELTPKKLAEEVSQLVGIPTKSVGRIDIFDNFTFMEVPQEVAPFVYEGL 505 Query: 546 TRTRILNKPMNMQ 558 +R+ +N++ Sbjct: 506 KYSRVNGARINLE 518 >UniRef50_B0P7Y4 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P7Y4_9FIRM Length = 572 Score = 381 bits (978), Expect = e-104, Method: Compositional matrix adjust. Identities = 220/547 (40%), Positives = 320/547 (58%), Gaps = 33/547 (6%) Query: 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 ET F D+GL +++A++D+ Y + + IQA+ IP L+ G DV+G + TG+GKTAAF +P Sbjct: 3 ETKFEDIGLSPELVQAVSDMNYTQATGIQAQAIPLLMQGADVIGRSSTGTGKTAAFGIPA 62 Query: 65 LQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 ++ ++ LKAPQ+LVL+PTRELA+Q+A+ M F+K+ GV V A+YGG D Q+RALR Sbjct: 63 VERIESGLKAPQVLVLSPTRELAMQIADEMRKFAKYKPGVCVAAVYGGAPMDAQIRALRA 122 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 IV+GTPGR++DH++R TL L L +VLDEADEML MGF++D++TI+A+ P+ QT Sbjct: 123 A-NIVIGTPGRVMDHMRRHTLRLDDLRTVVLDEADEMLNMGFLDDIQTILAETPDTRQTV 181 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 LFSATMP AI +IT +F+ +PQ V I++ T + Q ++ V RK +AL L+ D Sbjct: 182 LFSATMPPAILKITDKFLHDPQTVDIRTGQRTIAAVEQFFYRVPQARKMDALNLLLQYHD 241 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 A++F TK + E L +G+ + ++GDM QA R Q ++ +DG+ IL+ATDV Sbjct: 242 PKRAVVFCNTKAMVDSLTEYLSDHGFRALGIHGDMKQAGRTQVMQSFRDGKTRILVATDV 301 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRA-LLFVENRERRLLRNIERT 363 AARG+DVE I V N+DIP + E Y+HRIGRTGRAGR G + L R+ +R + R Sbjct: 302 AARGIDVENIEAVFNFDIPQEFEHYIHRIGRTGRAGRTGMSHTLVCGARQVDTIRQLRRF 361 Query: 364 MKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLET 423 + I E LP + + +++ EKFAA+V + LE+ D+Y ++ A D+ Sbjct: 362 INADIREAPLPIGDEIVRKKREKFAARVARTLEA---DEYGKWGEQLDAIAAERGCDMRD 418 Query: 424 LAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDV 483 +A AL +M ++P P +RP R R V Sbjct: 419 IACALAQMIAARDKKLIPVLKIPAPG------------------------ERPVRGGRRV 454 Query: 484 GDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQ 543 + R + GR V + V AIA+ + +R IG I +F S IEL + VL+ Sbjct: 455 ----VLRADAGRAQNVTPANFVAAIADASGLPARAIGKIDIFEDSSLIELYENDALTVLE 510 Query: 544 HFTRTRI 550 TRI Sbjct: 511 AMRSTRI 517 >UniRef50_C5CGQ2 DEAD/DEAH box helicase domain protein n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CGQ2_KOSOT Length = 524 Score = 374 bits (961), Expect = e-102, Method: Compositional matrix adjust. Identities = 203/544 (37%), Positives = 313/544 (57%), Gaps = 36/544 (6%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 F+++GL +L ++ +G+ +P+PIQ++ IP +LNGRD++G A TG+GKTAAF +PLL+ Sbjct: 4 NFSEMGLSRKMLNSIEKVGFVEPTPIQSKAIPVILNGRDIIGQAHTGTGKTAAFGIPLLE 63 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 LD K Q L+L PTRELAVQVA + + + + + V+A+YGGQ + Q+ L++G Sbjct: 64 MLDYSSKKVQALILCPTRELAVQVAREIAALASNRKEIEVLAIYGGQSIERQINTLKKGI 123 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 Q+VVGTPGR++DH++R TL L +VLDEADEML MGF+ED+ I++ + + Q +F Sbjct: 124 QVVVGTPGRIMDHMRRKTLKLDDTKFVVLDEADEMLNMGFLEDIRYILSHVGKERQITMF 183 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SATMP+AI + + F KEP+ +++ + T + Q Y + RK +AL + +E + Sbjct: 184 SATMPKAIIALAQEFQKEPELIKVINRELTVSTVEQYYLEIGESRKFDALSKLIEYYNPQ 243 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 +++F TK E+ L+ GY L+GDM+Q+LR + + ++ + +L+ATDVAA Sbjct: 244 LSLVFCNTKKKVDELVPMLQAKGYLVDGLHGDMSQSLRNRVMNSFRNKSIKVLVATDVAA 303 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RG+DV+ I V NYDIP D E YVHRIGRTGRAG+ G+A F R LR I+R K+ Sbjct: 304 RGIDVDDIEAVFNYDIPQDEEYYVHRIGRTGRAGKTGKAFSFAYGRSLHRLREIQRYTKI 363 Query: 367 TIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAA 426 I + +P+ + + +R+E F ++ LE +L Y + ++ A G +E +AA Sbjct: 364 KIKSLNVPSEKDVNTKRMESFLGEINDILEQGNLSDYVPAVEEL--IARGYT-SME-IAA 419 Query: 427 ALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDM 486 AL+KM +R +N+ G + + DR +M Sbjct: 420 ALIKMNVSKRAY-----------------------SQNEAGAKNNNRDR---------EM 447 Query: 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFT 546 + G + VR IVGAI E I IG+I+L + HS +E+ + V+ Sbjct: 448 IKLFVSAGSKHNIRVRDIVGAITGEAGIPGDRIGSIELLSKHSYVEVERRYAELVIDSLN 507 Query: 547 RTRI 550 R +I Sbjct: 508 RCKI 511 >UniRef50_Q5L3G9 DEAD-box ATP-dependent RNA helicase cshA n=94 Tax=Firmicutes RepID=CSHA_GEOKA Length = 467 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 207/480 (43%), Positives = 303/480 (63%), Gaps = 19/480 (3%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 TTF +LGL +++A+ +G+E+ +PIQA+ IP L +DV+G AQTG+GKTAAF +P++ Sbjct: 2 TTFQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIV 61 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 + ++ + A Q LV+APTRELA+QV+E + ++ V V+ +YGGQ + Q+RAL++ Sbjct: 62 EKVNVKNSAVQALVVAPTRELAIQVSEELYKIGA-VKRVRVLPIYGGQDIERQIRALKKH 120 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 P ++VGTPGR++DH+ RGTL L + +VLDEADEML MGFIED+E I++ +P QT L Sbjct: 121 PHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQTLL 180 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSATMP+ IRRI RFM EP+ V++++ T P+I Q Y V +K + L R L+ + Sbjct: 181 FSATMPDPIRRIAERFMNEPELVKVKAKEMTVPNIQQYYLEVHEKKKFDILTRLLDIQAP 240 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 + AI+F RTK E+AEAL GY + ++GD++QA R L + K+G ++IL+ATDVA Sbjct: 241 ELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILVATDVA 300 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARGLD+ ++ V N+DIP D ESYVHRIGRTGRAG+ G A+ FV RE L +IERT K Sbjct: 301 ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHIERTTK 360 Query: 366 LTIPEVELPNAE--LLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLET 423 + ++ P + L G++R+ K+ +E+ +L Y+ ++ EE D T Sbjct: 361 RKMERMKPPTLDEALEGQQRIA--IEKLLNVVETENLSFYKRAAEELL-----EEHDSVT 413 Query: 424 LAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDV 483 + AA LKM E P P+ + + + RG R D R R ++R + Sbjct: 414 IVAACLKMLTRE-----PDTTPV----QLTEEPPLAVKREKKRGGRPDGSARSRTKKRRI 464 >UniRef50_Q65N62 DEAD-box ATP-dependent RNA helicase cshA n=135 Tax=Firmicutes RepID=CSHA_BACLD Length = 487 Score = 370 bits (950), Expect = e-101, Method: Compositional matrix adjust. Identities = 198/482 (41%), Positives = 301/482 (62%), Gaps = 10/482 (2%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 TF D L + + +A+ +G+E+ +PIQA+ IP L +DV+G AQTG+GKTAAF +PL++ Sbjct: 4 TFQDFQLSSDLTKAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLVE 63 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 ++PE Q +V+APTRELA+QV+E + + R V+ +YGGQ Q+RAL++ P Sbjct: 64 KINPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRA-RVLPIYGGQDIGRQIRALKKNP 122 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 I+VGTPGRLLDH+ R T+ L ++ +VLDEADEML MGFIED+E+I++ +P HQT LF Sbjct: 123 HIIVGTPGRLLDHINRRTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPAEHQTLLF 182 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SATMP I+RI RFM P+ V++++ T +I Q Y V +K + L R L+ + + Sbjct: 183 SATMPAPIKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLEVHERKKFDTLTRLLDIQSPE 242 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 AI+F RTK E+ EAL GY + ++GD+ QA R L + K G +++L+ATDVAA Sbjct: 243 LAIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLVATDVAA 302 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RGLD+ ++ V N+D+P D ESYVHRIGRTGRAG+ G A+ F+ RE+ +LR IE+T K Sbjct: 303 RGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDMLRAIEQTTKR 362 Query: 367 TIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAA 426 + ++ P + + + + +++ +E ++L+ Y +++ E+ D T+ A Sbjct: 363 KMDRMKAPTLDEAIEGQQQVTVDRIRTIIEENNLNFYMTAAAELL-----EDHDSVTVVA 417 Query: 427 ALLKMAQGE---RTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDV 483 A +KM E + + +AP+R KR ++ R + R+ G RG ++R Sbjct: 418 AAIKMMTKEPDNTPVRLTEEAPLRTKRN-KNHHHRSSKRRDGGGYRGKNNRSSYDKKRSS 476 Query: 484 GD 485 D Sbjct: 477 ND 478 >UniRef50_Q11UP8 ATP-dependent RNA helicase (Cold-shock DEAD-box protein A) n=2 Tax=Bacteria RepID=Q11UP8_CYTH3 Length = 580 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 210/574 (36%), Positives = 323/574 (56%), Gaps = 23/574 (4%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F DLGL ++EA+ +GY + +PIQ + IP L+ G+D+ G AQTG+GKTAAF +P +++ Sbjct: 3 FKDLGLSPEVVEAIESIGYSEATPIQEKTIPILMTGKDLTGQAQTGTGKTAAFGIPAIEH 62 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 +D + Q L+L PTRELA+QV + SK +G+ V+A+YGG+ + Q+R L+ G Sbjct: 63 VDISINQTQSLILCPTRELALQVCTELKKLSKFKKGLRVLAVYGGESIERQIRDLKAGAH 122 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 IVVGTPGR++DHL R TL+ S LS ++LDEADEML MGF ED+E I+ ++PE QT LFS Sbjct: 123 IVVGTPGRIIDHLDRRTLNASHLSQIILDEADEMLNMGFREDIELILTRLPEERQTVLFS 182 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 AT+ I + +RF P+ ++I+ T + Q Y+ V +K E + + ++ + Sbjct: 183 ATLAPPILALAKRFQNNPEIIKIERKELTISTVEQFYYLVKNSQKTEIVTQIIDLNNLQL 242 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 +IF TK EV + L+ G+N +L+GD Q R + + + + G +IL+ATDVAAR Sbjct: 243 MLIFCNTKRKVEEVTDELKAYGHNPISLHGDKTQRDRTEVMSKFRKGLANILVATDVAAR 302 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 G+DV + V+NYD+P+D E+YVHRIGRTGRAG+ G++ V + E+ LR+IER K T Sbjct: 303 GIDVTGVDAVINYDVPLDIENYVHRIGRTGRAGQLGKSFTLVTSDEKYKLRDIERYTKAT 362 Query: 368 IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTA-EGEELDLETLAA 426 I + E P + L + +K A ++ +LE ++ + LL + + +++ + L+ Sbjct: 363 IEKAETPTRQELVAYKKDKLATRITTELEKPNIKIWSDLLEEYKEKGITADQIAIALLSK 422 Query: 427 ALLKMAQGERTLI---------------------VPPDAPMRPKREFRDRDDRGPRDRND 465 + +A+ ER + R DR P D Sbjct: 423 EMKDLAEPERRVFEDRGDRRDRGDRGDRGGRFDRGDRRDGPRRDGRSSDRFGDRPAASRD 482 Query: 466 RGPRGDREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLF 525 R RE PR D +L+ + VGR D + IVGA A E +I IG I +F Sbjct: 483 RDGGERRERTPRPRTSDASMARLF-VNVGRIDRISPGDIVGAFAGEANIKGSQIGQIDIF 541 Query: 526 ASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQL 559 +S +ELP + +V+ +I K +N+++ Sbjct: 542 DKYSFVELPHDLVDQVMDGMRNNKIKGKSINIEI 575 >UniRef50_C0EAN9 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EAN9_9CLOT Length = 563 Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust. Identities = 219/575 (38%), Positives = 322/575 (56%), Gaps = 35/575 (6%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 FA L L +A+ +G++ + IQA+ IP + G DV+G +QTG+GKT AF +P ++ Sbjct: 6 FAQLNLSDETGQAIEAMGFDNATDIQAQSIPLIRAGYDVIGRSQTGTGKTVAFGVPAVEL 65 Query: 68 LDPE--LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 +D E Q+L+L PTRELAVQ + +K+ RGV V +YGG D Q+ L++G Sbjct: 66 IDTEELRNKTQVLILCPTRELAVQACSEIEKIAKYKRGVRAVDIYGGAPMDRQIMRLKRG 125 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 IVVGTPGR++DHL+R TL L L ++LDEADEML MGF EDVETI+ Q P+ QT L Sbjct: 126 ANIVVGTPGRVMDHLRRRTLKLDHLKMIILDEADEMLNMGFREDVETILKQTPDERQTIL 185 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSATMP AI +T+++ K+PQ + I T +I Q ++ V RK +AL L+ D Sbjct: 186 FSATMPPAILALTKQYQKDPQLIEINRKQVTLDNIEQQFYEVPMGRKMDALGIILQYHDP 245 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 +IIF TK EV L+R+GY++ L+GDM Q+ R + ++ K GR IL+ATDVA Sbjct: 246 ALSIIFCNTKRMVDEVTAFLDRSGYSAEGLHGDMKQSQRTKVMDSFKRGRTKILVATDVA 305 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRER-RLLRNIERTM 364 ARG+DV + V+NYD+P + E YVHRIGRTGRAG+ G+A+ R + L +I R Sbjct: 306 ARGIDVNNVDYVINYDVPQNQEYYVHRIGRTGRAGKEGKAVTICSGRRQVDELYHIVRMT 365 Query: 365 KLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETL 424 K TI LP+ + + +R E A+++Q+L +++ Y+ + ++ + T+ Sbjct: 366 KSTIKRESLPSGQDIERRSNEGVVARMEQKLAAAEELYYKEVAEELVQKG----YNPTTI 421 Query: 425 AAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVG 484 AA L+MA G RPK +F + P+ +GPR G Sbjct: 422 AAVALEMAFG------------RPKTDFPEIKQFRPK-AGLQGPR--------------G 454 Query: 485 DMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQH 544 + I +GR++ + HIVGAI D+S R IG I+++ + + +P ++ Sbjct: 455 SFRKIEINIGRENHIAPNHIVGAITERSDLSGRDIGKIEIYDDKTIVAIPDSQIESTVKA 514 Query: 545 FTRTRILNKP-MNMQLLGDAQPHTGGERRGGGRGF 578 +I KP + + L G R GG RG+ Sbjct: 515 MDGCKICGKPTVTVALKGGDTAKRPDYRPGGNRGY 549 >UniRef50_A6M3F5 DEAD/DEAH box helicase domain protein n=5 Tax=Clostridium RepID=A6M3F5_CLOB8 Length = 525 Score = 368 bits (944), Expect = e-100, Method: Compositional matrix adjust. Identities = 212/554 (38%), Positives = 336/554 (60%), Gaps = 42/554 (7%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 FA LGLK I++A++DLG+ KPS IQ + IP L+G D++G AQTG+GKTAA+SLP++ Sbjct: 6 FATLGLKESIVKAISDLGFTKPSQIQEQSIPVTLSGADLIGQAQTGTGKTAAYSLPIITK 65 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP- 126 + + + L+LAPTRELAVQV E + SK+ + V + A+YGG D Q+RALR+G Sbjct: 66 MSDN-RGIKSLILAPTRELAVQVNEEIQRLSKYEKIVTL-AVYGGDSIDRQIRALRKGDV 123 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 IVVGTPGR+LD +KR L L + LVLDEADEML MGFI+D++ I++ P QT LF Sbjct: 124 DIVVGTPGRILDLVKRKCLHLESIEFLVLDEADEMLNMGFIDDIQEILSHTPSERQTLLF 183 Query: 187 SATMPEAIRRITRRFMK-EPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 SATMP+ I ++ +++MK + + V I+ S T I QSY+ + + EAL R L+ ++ Sbjct: 184 SATMPDPIAKLAKKYMKPDAKLVSIKRSSLTVSKIEQSYFMINNKHRLEALCRLLDLDNP 243 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 +AIIF RTK E+ + L+ GY ++GDM QA R TL + K+G L++LIATDVA Sbjct: 244 SSAIIFCRTKRGVDELVQELQSKGYMVEGMHGDMTQAHRLTTLNKFKEGTLNLLIATDVA 303 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARG+DVE ++ V NYD+P D ESYVHRIGRTGRA ++G A V ++ +L+ I+ K Sbjct: 304 ARGIDVEGVTHVFNYDLPQDVESYVHRIGRTGRANKSGTAYSLVTPKDFSMLKQIQNVTK 363 Query: 366 LTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLA 425 +I + +P AE + ++ + ++V+ +++ DL ++ + S I+ T E D ++ Sbjct: 364 SSITQKPVPTAEEINNKKFKDMMSEVESTIKAGDLTKF--IPSAIELT---ESYDAVSII 418 Query: 426 AALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGD 485 +AL+KM + E ++ + ++ + P++E D Sbjct: 419 SALMKM-KFENEIVFDYSS--------------------------NKLEAPKKE-----D 446 Query: 486 MQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHF 545 ++L+ VG+ DG+ + ++ I + +++ IG I L + S + + + + ++L++ Sbjct: 447 VRLF-FSVGKRDGLTPKVLINYIKDMTKVNASAIGQIDLMENFSFVTVDESISSKILKNC 505 Query: 546 TRTRILNKPMNMQL 559 +I K +N+++ Sbjct: 506 PGGKINKKKVNVEV 519 >UniRef50_UPI00016C471F RNA helicase DeaD n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C471F Length = 572 Score = 367 bits (942), Expect = e-100, Method: Compositional matrix adjust. Identities = 227/557 (40%), Positives = 320/557 (57%), Gaps = 24/557 (4%) Query: 3 EFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSL 62 E E+ FA LGL + ++E L LGYE+P+PIQ E IP L+ G D++G A TG+GKTAAFSL Sbjct: 18 ETESGFAKLGLDSRLVERLTGLGYEEPTPIQREAIPPLIEGHDLIGRAATGTGKTAAFSL 77 Query: 63 PLLQNL--DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 P+L L P L+L PTRELA+QVAE++ + + + GV V+ +YGG D Q+R Sbjct: 78 PILHGLARSTARTKPTSLILVPTRELAMQVAESVAKYGQPL-GVRVLPIYGGAPMDQQIR 136 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 AL +G +VV TPGR LDH++R TL L ++ +VLDEADEML MGF ED+E I+A P Sbjct: 137 ALDRGIDVVVATPGRALDHMRRTTLKLDAITVVVLDEADEMLDMGFAEDIEAILAATPTE 196 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTR---PDISQSYWTVWGMRKNEALV 237 QTALFSATM I+ I + +K E+ + P + Q+ + V K AL Sbjct: 197 RQTALFSATMAPRIKAIAVKHLKNATEIHVTRDPVPAGELPKVRQTAYVVQRQYKLAALG 256 Query: 238 RFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLD 297 R L+ E AA+IF +T++ E+ EAL GY AL+G M Q R++ + + G+ + Sbjct: 257 RVLDGESPAAALIFCKTRSEVDELTEALGGRGYRPEALHGGMAQDARDRVMRLFRAGQAN 316 Query: 298 ILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLL 357 +L+ATDVAARGLDVE ++ VVN+ +P+ E+YVHRIGR GRAGR G A+ E RE+ L Sbjct: 317 LLVATDVAARGLDVEHLTHVVNFSLPLGIENYVHRIGRVGRAGREGVAITVAEPREQGAL 376 Query: 358 RNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGE 417 R IER I ++P A L ++RLE+ +++ + + +L+ +RA+ + Sbjct: 377 RAIERHTGQRIEYGQVPTAATLREKRLERTKVAIRETVAAGELEAFRAMFGSLV-----G 431 Query: 418 ELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPR----GDRE 473 ELD +A A LK+A R + D P P R DR RD N PR R Sbjct: 432 ELDPTDVALAALKLAHRARGGDI-DDGPDIPVATVPQRGDRNGRDNNPLPPRRGAGAFRG 490 Query: 474 DRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIEL 533 PR R I GR+ G+ R +VGAIANE + R I +I++ S +++ Sbjct: 491 PGPRLAR--------IFISAGREAGIMPRDLVGAIANEAGLPGREIHSIEITERFSLVDV 542 Query: 534 PKGMPGEVLQHFTRTRI 550 P+ V++ R+ Sbjct: 543 PEDAAEHVIESLNGVRL 559 >UniRef50_Q0AVQ9 ATP-dependent RNA helicase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AVQ9_SYNWW Length = 530 Score = 365 bits (938), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 215/542 (39%), Positives = 318/542 (58%), Gaps = 43/542 (7%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F +GLK +L+ +++ G+EKP+PIQ + IP + G D++G AQTG+GKTA+F +P+L N Sbjct: 6 FYSMGLKTDLLQMIDEKGFEKPTPIQVKSIPIAMAGLDLMGQAQTGTGKTASFGIPIL-N 64 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 + + Q LVL PTRELAVQV E ++ S+ MR + V+A+YGGQ ++QLR+LR+ P+ Sbjct: 65 RVIKGEGLQALVLCPTRELAVQVTEEISSLSRRMR-IQVLAIYGGQSIELQLRSLRRNPE 123 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 I+VGTPGRL+DH+ RGT+ LS L +VLDEADEML MGF+ D++ I++Q P QT LFS Sbjct: 124 IIVGTPGRLMDHMNRGTISLSPLKYVVLDEADEMLDMGFLPDIQKILSQCPRERQTFLFS 183 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 AT+P+ +R + +FMK+P+ + I+S T P+I Q Y+ V RK E L R ++A+ Sbjct: 184 ATLPDEVRELGTKFMKQPEIILIESPERTVPEIEQYYYQVNSRRKIETLCRIIDAQQPPI 243 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 ++IF RTK E+A L GYN+ AL+GDM+Q R+ + + G IL+ATD+AAR Sbjct: 244 SLIFCRTKRNADELARVLTSRGYNADALHGDMSQRERDHVMHGFRQGNTKILVATDLAAR 303 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 GLD+E ++ V N+DIP D +SY+HR+GRTGRAGR+G A+ VE + RLLR IER Sbjct: 304 GLDIELVTHVFNFDIPEDLDSYIHRVGRTGRAGRSGIAITLVEPTQIRLLRMIERHTGKR 363 Query: 368 IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAA 427 I LP ++R + +V+Q + D +L K+ ++ D E + AA Sbjct: 364 IERALLPTLAEAVEKRQDLLLERVRQA-SAEPGDVCLSLAEKLM-----QQGDPEKMLAA 417 Query: 428 LLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDMQ 487 LK+ E PD M E + DD M Sbjct: 418 ALKLLIDEE-----PDFEMA---ELPESDD---------------------------SMA 442 Query: 488 LYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTR 547 + GR G+ R ++ IA +S + +G+I++ + + +E+P EV + F + Sbjct: 443 HLELPAGRLQGIHPRQLLEFIATHTSLSPQRVGDIEINRNSTFVEVPMDYIHEVYEAFEK 502 Query: 548 TR 549 R Sbjct: 503 YR 504 >UniRef50_C8P265 DEAD/DEAH family ATP-dependent RNA helicase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P265_ERYRH Length = 594 Score = 364 bits (934), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 208/561 (37%), Positives = 316/561 (56%), Gaps = 37/561 (6%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 TF +L L+ I+ A+ + GYE+P+ IQ++ IP LL D+L +QTG+GKTAAF LP+L Sbjct: 18 TFKELELEEEIVRAVTEKGYEEPTDIQSQAIPILLGNHDLLAQSQTGTGKTAAFGLPMLS 77 Query: 67 NLDP-ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 P + K L+L PTREL +QVAE M FSK+ +GVN+ +YGG D Q+R L++G Sbjct: 78 LTQPGDKKRTNSLILCPTRELCMQVAEEMRSFSKYKQGVNIACVYGGSPIDKQIRDLKRG 137 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 IVV TPGRL+DH++R T+ L +VLDEADEML MGFIED+E I + +PE Q A Sbjct: 138 ADIVVATPGRLMDHIRRKTIRLDDCRHIVLDEADEMLNMGFIEDIEEIFSFLPEERQFAF 197 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSATMP+ I +++ +F+ EP+ + + + T I Q Y+TV K + ++ L+ Sbjct: 198 FSATMPKEIVKLSEKFLVEPERITLSRNNLTVSRIKQIYYTVESRDKVDLTIQLLQLHKT 257 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 +IF TK E+ L + G+ + L+GDM Q +R + R K G + +LIATDVA Sbjct: 258 SGTMIFCNTKKMVDELTTQLNKAGFPALGLHGDMKQEMRSMVMSRFKKGMVSVLIATDVA 317 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARG+DV+ + +V+NYDIP + E YVHRIGRTGRAG+ G A+ V R+R ++ IER Sbjct: 318 ARGIDVDSMDVVINYDIPQELEYYVHRIGRTGRAGKEGLAITLVSRRQRYAIKQIERLSN 377 Query: 366 LTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLA 425 TI E LP E L +++ A ++++ +D +Q + L + E E + Sbjct: 378 STIVETPLPTKEQLNDLMVDQLAREIRKW---NDHEQGK-LFNIAYEGLRNENFTQEEII 433 Query: 426 AALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGD 485 A + E L +A K +++ ++ G+ Sbjct: 434 VAFINKMISESNL----EAIKVSK---------------------------QKDVKNKGE 462 Query: 486 MQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHF 545 + + VG DG+ H+V AIA I + IG IK+ + ST+E+P+ +++ Sbjct: 463 ISRIGLSVGDRDGIAAAHLVSAIATASGIRGKDIGRIKIDDNESTVEVPREFAQDIINKL 522 Query: 546 TRTRILNKPMNMQLLGD-AQP 565 + T+I +K + + ++ + AQP Sbjct: 523 SDTKINSKDVTVTMVDEFAQP 543 >UniRef50_Q2FKY7 DEAD/DEAH box helicase-like n=1 Tax=Methanospirillum hungatei JF-1 RepID=Q2FKY7_METHJ Length = 531 Score = 364 bits (934), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 211/536 (39%), Positives = 308/536 (57%), Gaps = 40/536 (7%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +F+DL L I++A+ D+GYE+P+PIQ E IP +L G DV G A TG+GKTAAF +P ++ Sbjct: 5 SFSDLQLSPGIIKAIRDIGYEEPTPIQQEVIPLILAGNDVAGQAYTGTGKTAAFGIPAIE 64 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 P + Q +VL P+RELAVQV + + H +G++++ +YGGQ + Q++AL +G Sbjct: 65 LCQPANRNVQTIVLCPSRELAVQVGTELNKLAMHKKGISILPVYGGQPIERQIKALSRGV 124 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 QI++GTPGR++DH+KR TL L +S +VLDEAD+ML MGF ED+E I++ IP+ QT + Sbjct: 125 QIIIGTPGRVIDHIKRKTLLLDAVSLVVLDEADQMLDMGFREDIEEILSHIPKERQTVIL 184 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SAT P I I+RRF K P +V++ T P I Q Y V K + L+R LE Sbjct: 185 SATFPPEILDISRRFQKNPIDVKMVHQELTVPQIEQYYIEVREPAKADTLIRVLEFYQPQ 244 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 IIF T+ A V+ AL+ G+ + L+G M QA R++ + + G+L+ILIATDVAA Sbjct: 245 RTIIFCNTQIAVDAVSSALKAEGFLADGLHGGMAQAQRDKVMNAFRKGQLEILIATDVAA 304 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RG+DVE I LV N+D P D E YVHRIGRT RAGR GRA+ FV RER LR++ R+ + Sbjct: 305 RGIDVEEIDLVCNFDFPQDDEYYVHRIGRTARAGRTGRAISFVSPRERYRLRDVRRSTRA 364 Query: 367 TIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAA 426 + +P +G ++ A +++ DL R ++ + AEG D LA Sbjct: 365 EPEPLPIPTLREIGGKKATTTLADADALMKTGDLTFCRPMIE--EKLAEGA--DPVALAT 420 Query: 427 ALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDM 486 +LL +A G T ++ED + +G+ Sbjct: 421 SLLMIAAGIAT---------------------------------EKEDDLEKY---LGEQ 444 Query: 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVL 542 + R+ GR DG+ VR I+ + N G IGNI++ + + I++P+ EV+ Sbjct: 445 AVVRLSAGRQDGILVRDILQIVRNSGRNIQNDIGNIRIGQTATYIDVPEQSVKEVI 500 >UniRef50_Q2NEZ7 Predicted helicase n=20 Tax=cellular organisms RepID=Q2NEZ7_METST Length = 583 Score = 363 bits (931), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 204/546 (37%), Positives = 315/546 (57%), Gaps = 38/546 (6%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F DL + I +A+ D+G+E+ SPIQ+ IP +L +DV G AQTG+GKTAAF +PLL+N Sbjct: 6 FKDLNISPEIQKAVADMGFEEASPIQSLAIPQILAHKDVTGQAQTGTGKTAAFGIPLLEN 65 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 +D E Q ++L PTRELA+QVAE + S ++ ++V+ +YGGQ D Q++AL++G Q Sbjct: 66 IDSEDNNLQAIILCPTRELAIQVAEELRKLSVYLPKIDVLPVYGGQPIDRQIKALQKGVQ 125 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 I++GTPGR++DH+ RGTL L+ + ++LDEADEML MGF ED+E I+ IP Q LFS Sbjct: 126 IIIGTPGRVMDHIDRGTLSLNNIKTVILDEADEMLDMGFREDIEYILEDIPYERQFLLFS 185 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 AT+P+ I ++ +R+ P+ V++ T PD+ Q Y+ V K E L R L+ DFD Sbjct: 186 ATLPQEILQLAQRYQTNPEIVKVTKHELTTPDVEQKYFEVKEDMKLELLSRLLDLHDFDL 245 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 +++F TK ++ L+ GY + L+GD+ Q R++ + + K G ++IL+ATDVAAR Sbjct: 246 SLVFCNTKRKVDKLVSHLQIRGYLADGLHGDLTQNQRDRVMSKFKKGNIEILVATDVAAR 305 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 G+DV + V N+DIP D+E YVHRIGRTGRAG+ G+A FV RE LR+I+R K Sbjct: 306 GIDVGGVEAVFNFDIPNDNEYYVHRIGRTGRAGKTGKAYSFVSGREIYQLRDIQRYAKTK 365 Query: 368 IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAA 427 I + +P + + + + F ++++++ + D+ + ++ K+ E+ + +AA Sbjct: 366 IEQAPIPALSDVEEVKKDNFIEELKEKINTEDISKETYIIEKLVE----EDYNSIDIAAT 421 Query: 428 LLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDMQ 487 LLK D + EF GD E R Sbjct: 422 LLKGV---------IDDKRYKEEEF-----------------GDTEAHEGFVR------- 448 Query: 488 LYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTR 547 + + VGR + + I+ +I + ++ IGNI +F + S +E+PK + + Sbjct: 449 -FFMSVGRKQNITISVILNSIYEKTGLTGHQIGNIDIFDNFSFVEIPKANASDFYRFMGD 507 Query: 548 TRILNK 553 T I NK Sbjct: 508 TYIENK 513 >UniRef50_A8SKI7 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SKI7_9FIRM Length = 580 Score = 362 bits (930), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 197/544 (36%), Positives = 315/544 (57%), Gaps = 17/544 (3%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F D L +L+A+ ++G+E+PSPIQ + IP +LN D++G AQTG+GKTA+F +P+++ Sbjct: 5 FNDFNLSKEVLKAVVEMGFEEPSPIQKQAIPTMLNNEDIIGQAQTGTGKTASFGIPIVEK 64 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 ++ K Q +VL PTREL++QVAE ++ +K+ +GV VV +YGGQ + Q+R+L+ G Q Sbjct: 65 VNKNSKTTQAMVLCPTRELSIQVAEEISKLAKY-KGVTVVPIYGGQPIERQIRSLKMGVQ 123 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 ++VGTPGR++DH+KR TL + VLDEADEM MGF ED+E I+ +P QT FS Sbjct: 124 VIVGTPGRVIDHIKRKTLKTENIKTFVLDEADEMFDMGFREDIEKIIGFLPYERQTTFFS 183 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 ATM + R+ EP+ +++ T P ++Q Y+ + K E L R L+ ++ Sbjct: 184 ATMDHEMMDFAARYQSEPRLIKVVPKELTVPKVTQYYFALKHNMKLEILSRILDVQNPKL 243 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 ++F TK ++ L+ GY + L+GD+ Q R+ + + ++ +DIL+ATDVAAR Sbjct: 244 TVVFCNTKKMVDDLTAGLQSRGYFADGLHGDLKQIQRDGVMNKFRNSTIDILVATDVAAR 303 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 G+DV+ + LV+NYD+P D E YVHRIGRT RAGR G A+ FV RE L I++ K Sbjct: 304 GIDVDDVDLVINYDMPQDVEYYVHRIGRTARAGREGTAISFVSPREMNTLSQIQKYTKTK 363 Query: 368 IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAA 427 I + ++P + L KR E+F +++++ ++ + L++ + E+ +AA Sbjct: 364 IEKRDMPTLKDLIKRHEERFMEDIKEEINKNEHTKELNLINILM----SEDYSPIDIAAC 419 Query: 428 LLKMAQGERTLIVPPDAPMRPKREFRDRD-DRGPRDRNDRGPRGDREDRPRRERRDVGDM 486 LLK L E D D + + ND+ ++ + ++ G Sbjct: 420 LLKHYNENNKL--------NNHEELIDVDIKKNKKKGNDKTSISNKGGKSNVTEKNSG-- 469 Query: 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFT 546 ++Y I +G GV RHIV A+ N+ +IS+R IG+I++F S + + K + + + Sbjct: 470 RIY-INIGSRKGVSQRHIVSALCNDANISARDIGDIEIFEKFSFVNIHKNALKDAVNNLN 528 Query: 547 RTRI 550 I Sbjct: 529 NAHI 532 >UniRef50_C1IBN1 DEAD-box ATP dependent DNA helicase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1IBN1_9CLOT Length = 526 Score = 360 bits (925), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 206/557 (36%), Positives = 320/557 (57%), Gaps = 43/557 (7%) Query: 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 E F++LGLK +L+++NDLG+EKPS IQAE IP + G D++G AQTG+GKTAAF + Sbjct: 3 EIKFSNLGLKDTLLKSINDLGFEKPSQIQAEAIPVAIQGYDLIGQAQTGTGKTAAFGCGI 62 Query: 65 LQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 + ++ + ++LAPTRELA+QV + + SK+ + ++ +YGG Q+RAL++ Sbjct: 63 INHISKK-SGLSAIILAPTRELAIQVNDELKRLSKY-DDLTILPVYGGDPITNQIRALKR 120 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 IVVGTPGR+LDH+KRGT+ L ++ LVLDEADEML MGFI+D+E I+ Q+P QT Sbjct: 121 NVNIVVGTPGRVLDHIKRGTIKLDQIKFLVLDEADEMLNMGFIDDLEDIIKQLPSERQTL 180 Query: 185 LFSATMPEAIRRITRRFMK-EPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAE 243 LFSATMP+ IR++ +R+MK + + + I+ + T ISQ+++ V + EAL R L+ + Sbjct: 181 LFSATMPDQIRKLAKRYMKPDAKHISIKKTSMTVSTISQNFFEVSHKTRFEALCRVLDFD 240 Query: 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 303 +AIIF RTK E+ E ++ GY ++GDM+QA R +TL++ K+G L+ L+ATD Sbjct: 241 TPSSAIIFCRTKKGVDELVEGMQSRGYVVEGMHGDMSQAHRLRTLKKFKEGSLNYLVATD 300 Query: 304 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 363 VAARG+DVE I+ V+NYD+P D ESYVHRIGRTGRA R G A V +E +L+ I+ Sbjct: 301 VAARGIDVEGITHVINYDLPQDVESYVHRIGRTGRANREGIAYSLVSPKEYSMLKQIKSV 360 Query: 364 MKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLET 423 K I +P + + + V + SD ++ + +++ + E Sbjct: 361 TKSDISRKNIPTVNDIFNSKSKSILEDVTNTINDSDYSKFIPVATELTQKYDSVE----- 415 Query: 424 LAAALLKMAQGERTL-IVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRD 482 + AAL+K + L D PK E Sbjct: 416 IIAALIKNKFNDDLLETYTSDVLEAPKSE------------------------------- 444 Query: 483 VGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVL 542 D++L+ + +GR DG+ + +V I + I + IG+I + + S + + + +VL Sbjct: 445 --DIRLF-LSIGRRDGINPKTLVNFIKDTARIRASSIGDIDILENFSFVNISPDVKDKVL 501 Query: 543 QHFTRTRILNKPMNMQL 559 ++ + +N+++ Sbjct: 502 DKCIGVKLNKRKVNIEV 518 >UniRef50_UPI0001C33831 DNA/RNA helicase, superfamily II n=3 Tax=Cyanobacteria RepID=UPI0001C33831 Length = 477 Score = 360 bits (925), Expect = 8e-98, Method: Compositional matrix adjust. Identities = 190/428 (44%), Positives = 283/428 (66%), Gaps = 11/428 (2%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +F +LGL + L +LG+E P+ IQ + IP +L G DVLG +QTG+GKTAA+SLP+L+ Sbjct: 4 SFENLGLSETRVNKLKELGFENPTEIQEKAIPLMLEGHDVLGQSQTGTGKTAAYSLPILE 63 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 +D + + Q+L+L PTRELA QVAEA+ DF+ R + ++ +YGGQ D Q+R+L +G Sbjct: 64 KVDIQDPSVQVLILTPTRELAQQVAEALKDFTVRRR-LYILTVYGGQSIDRQIRSLERGV 122 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 QIVVGTPGR++D ++R L L L VLDEADEML MGFI+DV+TI+ + PE TA F Sbjct: 123 QIVVGTPGRVIDLIERKKLILDSLRWAVLDEADEMLSMGFIDDVKTILKKTPESRSTACF 182 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTV---WGMRKNEALVRFLEAE 243 SATMP IR + +F+K P + ++ + I Q+ + V W RK AL LE E Sbjct: 183 SATMPREIRELVNQFLKSPVTISVERTQAAPTRIEQNIYMVPRGWSKRK--ALQPVLEIE 240 Query: 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 303 D ++AIIFVRTK ++ L+ G+ +G+++Q+ RE+ + R +DGR+ +++ATD Sbjct: 241 DPESAIIFVRTKQTASDLTTRLQEIGHCVDEYHGNLSQSQRERLVHRFRDGRIKLVVATD 300 Query: 304 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 363 +AARGLDVE +S V+NYD+P +SE+Y+HRIGRTGRAG+ G+A+ VE+ +RR++R IER Sbjct: 301 IAARGLDVEGLSHVINYDLPDNSETYIHRIGRTGRAGKTGKAISIVESADRRMIRQIERK 360 Query: 364 MKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLET 423 ++ I ++PN + +RL K +++ L + + L+S++ E D + Sbjct: 361 LRQKIDICKIPNRSEVEAKRLGKLQNLIKESLIGERMASFLPLVSEL-----STEYDSQA 415 Query: 424 LAAALLKM 431 +AAA L+M Sbjct: 416 IAAAALQM 423 >UniRef50_C0AEG7 DEAD/DEAH box helicase domain protein (Fragment) n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0AEG7_9BACT Length = 606 Score = 358 bits (920), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 194/430 (45%), Positives = 273/430 (63%), Gaps = 12/430 (2%) Query: 9 ADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNL 68 A+LGL +L+A++ +G+E+ SPIQA IP LL G DV+G + TGSGKTAAF+LP ++ + Sbjct: 1 AELGLSPELLKAVDKMGFEEASPIQAAVIPLLLAGSDVVGQSSTGSGKTAAFALPAIERV 60 Query: 69 DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQI 128 D +LKA Q+L+L PTRELAVQVAE + + RGV V +YGGQ Y+ Q RAL G Q+ Sbjct: 61 DTKLKAVQVLILCPTRELAVQVAEEVNKLASFKRGVMEVPIYGGQSYERQFRALAAGAQV 120 Query: 129 VVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSA 188 V+GTPGR++DH++RGTL L KLS ++LDE D ML MGF +D+E I+ +PE Q+ FSA Sbjct: 121 VIGTPGRVMDHMERGTLKLDKLSMVILDECDRMLDMGFRDDIEHILKSVPEQRQSLFFSA 180 Query: 189 TMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAA 248 TMP IR + RF+ P V+I++ + + P + Q Y+ V K E L R ++ DF Sbjct: 181 TMPREIRDMISRFIPNPAWVKIETQMQSAPQVDQVYFEVDRRSKLEVLTRLIDLNDFRYG 240 Query: 249 IIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARG 308 IIF TK E+ E L GY L+GD+ QA R +T+E+ K + LIATDVAARG Sbjct: 241 IIFCSTKIMVDELDENLHARGYACDRLHGDITQAQRTRTMEKFKRRGFEFLIATDVAARG 300 Query: 309 LDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTI 368 LDV+ + +V N+D+P D+E Y HRIGRTGRAGR G+A FV RE L+++ R +L I Sbjct: 301 LDVDDLEVVFNFDLPNDAEDYTHRIGRTGRAGRKGKAFTFVSGRELWKLQSMVRFARLDI 360 Query: 369 PEVELPNAELLGKRRLEKFAAKVQQQLESSDL---DQY-RALLSKIQPTAEGEELDLETL 424 +P+ + + + R F K++ L++ D++ LL + P+ + + Sbjct: 361 RRERVPSLDQVEEARENVFFEKLRATLDAKKFCPQDRFIDRLLEQGYPSTD--------I 412 Query: 425 AAALLKMAQG 434 AALL + QG Sbjct: 413 IAALLHLMQG 422 >UniRef50_Q0ST49 ATP-dependent RNA helicase, DEAD/DEAH box family n=23 Tax=cellular organisms RepID=Q0ST49_CLOPS Length = 528 Score = 358 bits (920), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 195/430 (45%), Positives = 274/430 (63%), Gaps = 11/430 (2%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F DLGLK +L+A+ D+G+E+PS IQAE IP L G D++G AQTG+GKTAAF ++ N Sbjct: 6 FDDLGLKESLLKAIKDMGFEEPSQIQAESIPVALEGHDIIGQAQTGTGKTAAFGCAIINN 65 Query: 68 LD--PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 D + K+P+ L+LAPTRELA+QV E + KH + ++V+ +YGGQ D Q+RAL+ G Sbjct: 66 ADFSGKKKSPKALILAPTRELAIQVNEELVRLGKHEK-LSVLPIYGGQPIDRQIRALKNG 124 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 IVVGTPGR+LD ++R +L L+ + LVLDEADEML MGFI+D+E I+ + QT L Sbjct: 125 VDIVVGTPGRVLDLIRRKSLPLNDIGFLVLDEADEMLNMGFIDDLEEIVKSLKTDRQTLL 184 Query: 186 FSATMPEAIRRITRRFMKE-PQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 FSATMP I+++ R +MKE + + I+ S T I Q Y+ + + E L R L+ ++ Sbjct: 185 FSATMPPQIKKLARNYMKEDTKHIAIKKSSLTVSKIEQFYFEIKHRDRFETLCRVLDFDE 244 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 +AAIIF +TK EV E ++ GY ++GDM+Q R QTL + K+G LD L+ATDV Sbjct: 245 PNAAIIFCKTKKGVDEVVEKMQARGYMVEGMHGDMSQNHRLQTLRKFKEGSLDFLVATDV 304 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 AARG+DVE ++ V+NYD+P D+ESYVHRIGRTGRA R G A V +E +L+ I++ Sbjct: 305 AARGIDVESVTHVINYDLPQDNESYVHRIGRTGRANREGVAYSLVTPKEYMMLKQIQKHT 364 Query: 365 KLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAE--GEELDLE 422 K I +P + + + + V+ +E + D K P A E+ L Sbjct: 365 KSKIIRKAVPTVDEIFQNKHNNIINNVKSTIEEASED-----FQKFIPIATQLDEDYSLV 419 Query: 423 TLAAALLKMA 432 +AAALLK+ Sbjct: 420 DVAAALLKIV 429 >UniRef50_B1ZXI6 DEAD/DEAH box helicase domain protein n=3 Tax=Verrucomicrobia RepID=B1ZXI6_OPITP Length = 594 Score = 358 bits (919), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 218/574 (37%), Positives = 319/574 (55%), Gaps = 32/574 (5%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 FA+LGL IL A++ +G+E+ +PIQA IP +L GRDV+G++ TGSGKT AF++P L+ Sbjct: 6 FAELGLSPEILRAVDKMGFEEAAPIQAAVIPTVLGGRDVVGVSSTGSGKTVAFAIPALER 65 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 +DP+L+A Q+LVL PTRELAVQVAE M ++ RG+ V +YGGQ Y+ Q RAL G Q Sbjct: 66 VDPKLRAVQVLVLCPTRELAVQVAEEMGHLAQFKRGIMGVPIYGGQSYERQYRALAAGSQ 125 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 +V+GTPGR++DH++RGTL L L +VLDEAD ML MGF ED+E I++ +P Q FS Sbjct: 126 VVIGTPGRVMDHMERGTLKLGALKLVVLDEADRMLDMGFREDIEKILSAVPVPRQLLFFS 185 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 ATMP I+ + +R ++P ++I++ P + Q Y+ V K EAL R ++ DF Sbjct: 186 ATMPRPIQELIKRTARDPAWIKIEAVAQNAPQVEQIYFEVDRRSKLEALTRLIDVHDFRY 245 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 I+F TK ++ E L GY L+GD++Q R++ +++ + + LIATDVAAR Sbjct: 246 GIVFCSTKVMVDDLDEHLHARGYAVDRLHGDLSQTQRDRVMDKFRRRGFEFLIATDVAAR 305 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 GLDV+ + +V NYD+P D+E Y HRIGRTGRAG++GRA FV +E L+ + R KL Sbjct: 306 GLDVDDLEVVFNYDLPNDAEDYTHRIGRTGRAGKSGRAFTFVSGQEIYKLQAMVRWAKLD 365 Query: 368 IPEVELPNAELLGKRRLEKFAAKVQQQLESSD-----------LDQ-------YRALLSK 409 + LP+ + + + R F K++ LE+ + LDQ AL+ Sbjct: 366 LRRGRLPSLDEVEEARTNVFFEKIRAALEAKEFKPHDRMIDRLLDQGYASTDICSALIHL 425 Query: 410 IQ------PTAEGEELDLETLAA--ALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPR 461 +Q P A E A A K A RT +RP + P Sbjct: 426 LQGGSTGTPAAVHESAKASAAAPDWARRKSAPESRTAFPSEAGEIRPSPKASSFAKPTPD 485 Query: 462 DRNDRGP-----RGDREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISS 516 D P + + RP R + G M + VGR+ V IVG IA +++ Sbjct: 486 KTADGLPALAGRKKQKYARPPRTGAEPG-MSPVVLNVGREHQVTPADIVGKIAGVTRLAA 544 Query: 517 RYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRI 550 +G I + H+ +++ + V++ R+ Sbjct: 545 SIVGAIDIHERHTLVDVAENAVPVVIKKLAGIRL 578 >UniRef50_A6VJ89 DEAD/DEAH box helicase domain protein n=5 Tax=Euryarchaeota RepID=A6VJ89_METM7 Length = 546 Score = 357 bits (917), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 208/556 (37%), Positives = 322/556 (57%), Gaps = 46/556 (8%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNG-RDVLGMAQTGSGKTAAFSLPLL 65 +F +LGL I++AL G+ P+PIQ + IP L+ G RDV+G AQTG+GKTAAF +P+L Sbjct: 3 SFKNLGLSDEIIKALEKKGFTNPTPIQEQAIPILIEGKRDVVGQAQTGTGKTAAFGIPIL 62 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 + +D + Q L+LAPTRELA+QVAE + D K + +NV +YGGQ D Q+R L++G Sbjct: 63 ETIDESSRNTQALILAPTRELAIQVAEEI-DSIKGSKRLNVFPVYGGQSIDRQIRELKRG 121 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 QIVVGTPGR+LDH+ R T+ L +S +VLDEADEML MGFI+DVE I+ + + L Sbjct: 122 VQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTEKRMLL 181 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSAT+P++I ++ + +M+E ++++ T QSY+ + K E L R ++ E Sbjct: 182 FSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSYYEIHSRDKFELLSRIIDVEKE 241 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 +IF +TK E++ L GY + L+GDM QA RE+TL++ K ++++L+ATDVA Sbjct: 242 FYGLIFCKTKADVDEISSRLTEKGYAAEGLHGDMTQAQREKTLDKFKARKINVLVATDVA 301 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARG+D+ ++ VVNYDIP + ESYVHRIGRTGRAG+ G A+ FVE E R + I++ Sbjct: 302 ARGIDINDLTHVVNYDIPQNPESYVHRIGRTGRAGKQGYAVTFVEPSEFRKFKYIQKIAN 361 Query: 366 LTIPEVELPNA-ELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETL 424 I + E+P+ +++G ++ K + +++ LES G+ D E + Sbjct: 362 TEIRKEEVPDVKDIIGAKK-RKIVSGIKELLES------------------GKYNDCEKM 402 Query: 425 AAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDV- 483 AA LL+ A P + ++ +D+ + G +RE R R E R Sbjct: 403 AAELLEDAD--------PQEVLSAVLKYALKDELSESNYKRIGKPANREGRDRGEGRSEG 454 Query: 484 --------------GDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHS 529 G+++L+ + +G+ D + + +V I+ + D+ R I ++K+F S Sbjct: 455 RRDRGEGRRSFVSGGNVRLF-VALGKLDKMNPKKLVDHISKKSDVKGRDIDDVKVFEKFS 513 Query: 530 TIELPKGMPGEVLQHF 545 + + +L F Sbjct: 514 FVTVSSDNAEIILDSF 529 >UniRef50_A9NFC3 DEAD box ATP-dependent RNA helicase n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NFC3_ACHLI Length = 547 Score = 357 bits (917), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 197/520 (37%), Positives = 304/520 (58%), Gaps = 18/520 (3%) Query: 8 FADLGLKAPILE----ALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 F DL PIL+ AL LG+ + +PIQ + IP ++ G D++G AQTG+GKT AF +P Sbjct: 5 FNDL----PILDTTKVALEKLGFTEATPIQEQAIPKMILGLDLIGQAQTGTGKTFAFGIP 60 Query: 64 LLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 +++ D L+ Q L+L PTREL QV + + K + V + GG+ Y+ Q + L Sbjct: 61 MVEKTDTSLRQTQGLILTPTRELTNQVYKEIIKLVKFYPELRVTTIVGGESYEKQFKELD 120 Query: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183 + P I+V TPGR++DH+ RGT+DLS ++ L LDEADEML+MGF +D+E I+ PE QT Sbjct: 121 RKPHIIVATPGRIIDHIDRGTVDLSHITTLTLDEADEMLKMGFQDDIERILQTTPETRQT 180 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAE 243 LFSATMP I++I + + K P+ ++I++ T I+Q+Y+ V K L R L+ E Sbjct: 181 VLFSATMPAFIKKIAKNYQKNPELIKIEAKSLTVDRITQAYFLVKEKEKQSLLERLLDFE 240 Query: 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 303 + AIIFV TK + E+L++ G+ + AL+GD+ Q+ R + R + +L IL+ATD Sbjct: 241 NPSTAIIFVNTKAGADRITESLQKAGFTADALHGDLKQSQRTYVMNRFRSKQLSILVATD 300 Query: 304 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 363 VAARGLDV+ + ++VNYD+P E YVHRIGRTGRAG+ G+A FV +RR+L + Sbjct: 301 VAARGLDVDDVEIIVNYDLPQQDEIYVHRIGRTGRAGKKGKAFTFVTPLKRRMLDMLAHY 360 Query: 364 MKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLET 423 K I +E+P A+ + K +L+ F K++ +L + + A+ + ++L L Sbjct: 361 TKADIKRLEVPTADDVYKEQLKTFKHKIKTELANEYPNHLEAIKELLVDEGSKDQL-LNY 419 Query: 424 LAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDV 483 L ++L + T+ + P+ R R +D+RG ND+G + R R R Sbjct: 420 LLDSMLPTKKTYETIEIIPEKASR-----RSQDERG----NDKGRKDSRSSRDASPARGS 470 Query: 484 GDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIK 523 G + + +G+ DG+ + + E I S+ IG+I+ Sbjct: 471 GQYVDFTLNIGKADGLTPPTLFKFMEKEYGIFSKNIGDIR 510 >UniRef50_Q04VV9 ATP-dependent RNA helicase (Superfamily II) n=4 Tax=Leptospira RepID=Q04VV9_LEPBJ Length = 513 Score = 354 bits (909), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 184/462 (39%), Positives = 281/462 (60%), Gaps = 9/462 (1%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F++L L A I A+ ++G+E+ SPIQ+E IP +L G+D++G AQTG+GKTAAF++P ++ Sbjct: 6 FSELNLSAEIQNAILEMGFEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAIPAIEL 65 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 L+ E K Q L+L PTREL +QV+E K+ VV +YGGQ + QL+ALR+ PQ Sbjct: 66 LEVESKHLQALILCPTRELVIQVSEQFRKLMKYKGNFEVVPVYGGQEIERQLKALRKNPQ 125 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 IV+ TPGR++DH++RG++ L+ + +VLDEADEML MGF ED+E I+ P QT +FS Sbjct: 126 IVIATPGRMMDHMRRGSIRLNDIKIVVLDEADEMLDMGFREDMEFILKDTPIDRQTIMFS 185 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 ATM E I + +RF K PQ + + + P I Q Y+ + K EAL R +E + Sbjct: 186 ATMTEDILTLMKRFQKHPQIIDVTHQKLSAPKIEQIYYEIQENAKGEALARLIEYRNVKL 245 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 A++F TK V E L+ GY + AL+GD+NQ R++ + ++G ++IL+ATDVA R Sbjct: 246 ALVFCNTKAQVDTVVELLKSRGYFAEALHGDLNQKQRDKVMNGFRNGNIEILVATDVAGR 305 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 G+DV + V NYD+P D E YVHRIGRTGRAG+ G A F+ ++ L+ IER + Sbjct: 306 GIDVNNVEAVFNYDLPRDGEDYVHRIGRTGRAGKKGIAFSFIVGKQIYNLKKIERINGIK 365 Query: 368 IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAA 427 I ++P + L + ++ + +KV+ +++ + +Y + K+ G++ +AAA Sbjct: 366 IEAGKIPTLDDLEETKIHSYTSKVRSIVDAGHIGKYVNQVEKLM----GDDYTALDIAAA 421 Query: 428 LLKMAQGERTLIVPPDAPMRPKREFRDRDD--RGP---RDRN 464 L KM ++ ++ +R+ + P RDRN Sbjct: 422 LFKMTILRDSVTFDDSVQFESNFKYEERNSFKKKPGKYRDRN 463 >UniRef50_B9Y818 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y818_9FIRM Length = 556 Score = 350 bits (899), Expect = 7e-95, Method: Compositional matrix adjust. Identities = 205/574 (35%), Positives = 320/574 (55%), Gaps = 36/574 (6%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F +L L + A+ D GY + + IQ+ CIP ++NG DV+G +QTG+GKTAAF++P+++ Sbjct: 3 FNELNLSPEMSRAIADCGYTEATYIQSACIPVVMNGGDVIGQSQTGTGKTAAFAIPIIEM 62 Query: 68 LD-PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 L+ + K PQ L+L+PTRELA+QV + + F+K+ G+ VA+YGGQ+ Q+ L++G Sbjct: 63 LEVTDRKRPQALILSPTRELAMQVCDEIRKFTKYKEGIRTVAVYGGQQISKQILELKKGA 122 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 IVVGTPGR+LDH++R TL + LVLDEADEML MGF ED+ET++ +P+ QT LF Sbjct: 123 DIVVGTPGRVLDHIRRRTLRFDQCRVLVLDEADEMLNMGFREDIETVIEALPQQRQTVLF 182 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SATMP+ I IT ++ P ++ + P I Q Y+ K E L++ + ++ Sbjct: 183 SATMPKPILEITSQYQTNPVHIKTPQTQINTPKIEQVYYVCPKEAKKEILMQLISMQNPH 242 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 A+IF TK E+ L GY +AAL+GDM Q +R ++ K G+++IL+ATDVAA Sbjct: 243 LAMIFCNTKKMVDELTSDLVSKGYPAAALHGDMKQEMRTGVMDNFKKGKINILVATDVAA 302 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RG+DV+ + +V NYD+P +SE YVHRIGRTGRAG+ G A+ + R++ LR++ERT + Sbjct: 303 RGIDVDSMDVVFNYDLPQESEYYVHRIGRTGRAGKEGLAVTLITARQKYALRDLERTTRS 362 Query: 367 TIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAA 426 + + LP+ E + K RL+ ++ ++ + D+ + L+ I T + + +A Sbjct: 363 KLTQKPLPSLEEVRKIRLDFLREDLEHRM-TRDVPEP---LAAIIDTMKDDGYSYREMAL 418 Query: 427 ALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDM 486 AL G D+ + RP + G Sbjct: 419 ALAYQIAGHEMF-----------------DESA----------WNASARPALTVTEKGMS 451 Query: 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFT 546 +L +++G D V IV AIA + + IG I++ A +T+++P+ E+ Sbjct: 452 ELI-LDIGSDQDVSAAIIVSAIATATGLPGKDIGKIRISAQETTVQIPRQFDREIADAMK 510 Query: 547 RTRILNK---PMNMQLLGDAQPHTGGERRGGGRG 577 T I + P+ M G + +RR +G Sbjct: 511 NTPIKGQTVHPLLMVRKGKDYSNLPPKRRAASKG 544 >UniRef50_A6KZW9 ATP-dependent RNA helicase n=51 Tax=Bacteria RepID=A6KZW9_BACV8 Length = 624 Score = 348 bits (892), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 211/619 (34%), Positives = 343/619 (55%), Gaps = 37/619 (5%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLL-NGRDVLGMAQTGSGKTAAFSLPLL 65 TF +LG+ IL+A+ ++GYE P P+Q E IP+LL NG DV+ +AQTG+GKTAAF LPL+ Sbjct: 3 TFEELGVSPEILKAIKEMGYENPMPVQEEVIPYLLGNGNDVVALAQTGTGKTAAFGLPLI 62 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 Q +D + +APQ L+L PTREL +Q+A + D+SK++ G+ ++ +YGG + Q+R L+ G Sbjct: 63 QKVDVKHRAPQALILCPTRELCLQIAGDLNDYSKYIDGLKILPVYGGSSIESQIRMLKTG 122 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 I+V TPGRL+D ++R L ++ +V+DEADEML MGF + + I+ ++PE T + Sbjct: 123 VHIIVATPGRLIDLIERKVAKLETITDVVMDEADEMLNMGFTDSINAILEKVPEDRNTLM 182 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSATM I RI ++++ + +E+ I + +++ + V K AL R + Sbjct: 183 FSATMSPEISRIAKKYLHDAKEITIGTKNEGSKNVNHIAYLVHAKDKYAALKRIADYYPQ 242 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 IIF RT+ T E+A+ L ++GYN+ +L+G+++QA R+ +++ + L +L+ATDVA Sbjct: 243 IYGIIFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDLVMQKFRQRHLQLLVATDVA 302 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARGLDV ++ V+NY +P D ESY HR GRTGRAG+ G ++ + RE+ +R IER + Sbjct: 303 ARGLDVNDLTHVINYGLPDDIESYTHRSGRTGRAGKTGISIAIINLREKGKMREIERIIN 362 Query: 366 LTIPEVELPNAELLGKRRLEKFAAKVQ------QQLESSDLDQYRALLSKIQPTAEGEEL 419 E+P+ + + +++L K ++ +++ES YR L E L Sbjct: 363 KKFIMGEMPSGKQICEQQLIKLIDDIEKVKVNDEEIESFLPGIYRKL----------EWL 412 Query: 420 DLETLAAALLKMAQGERTLIVPPDAPMRPKREFRD-RDDRGPRDRNDRGPRGDREDRPRR 478 E L ++ M + R L +AP D R +RG ++R D G ++ +R Sbjct: 413 SKEDLIKRVVSM-EFNRFLEYYSNAPEIEIPSTNDRRSERGSKERKDHGSAREKTER--- 468 Query: 479 ERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMP 538 + + G +L+ + VG+ DG I+ I IG I L + S E+ + Sbjct: 469 -KAEKGYTRLF-LNVGKTDGFYANQIIELINRNMKKQRTTIGRIDLMQNFSFFEVAENQA 526 Query: 539 GEVLQHFTRTRILN--KPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERREG 596 +V++ + LN + + +++ GD G+ GERR + ++ Sbjct: 527 QDVIKALNKVN-LNGGRKIVVEVAGD----------NNGKNDNGERRSSAARNASFGKKS 575 Query: 597 GRGDGRRFSGERREGRAPR 615 R + + S E R RA R Sbjct: 576 DRSNKKTTSKEGRPSRAER 594 >UniRef50_A8REA9 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8REA9_9FIRM Length = 572 Score = 347 bits (891), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 202/557 (36%), Positives = 316/557 (56%), Gaps = 38/557 (6%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 TTF +L + IL A++++GYE+ + IQA+ IP+++ G+DVLG + TG+GKTAAF +P + Sbjct: 2 TTFNELHISEAILRAVSEMGYEQATEIQAKAIPYIMEGKDVLGRSNTGTGKTAAFGIPAI 61 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 + + P+ K L++ PTREL QVA + FSK+ GV +V +YGGQ + Q++ L++G Sbjct: 62 EMVQPQDKYANALIICPTRELVTQVAMELRKFSKYKEGVKIVPIYGGQPIERQIQLLKRG 121 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE--GHQT 183 IVVGTPGR++DHL+R TL LS + ++LDEADEML MGF ED+E I++ +P +QT Sbjct: 122 CGIVVGTPGRIMDHLRRRTLKLSDIRMVILDEADEMLNMGFKEDIEEILSLMPSERSYQT 181 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAE 243 LFSAT P I RI + F +P V I+S+ T + Q Y+ V +K AL L Sbjct: 182 ILFSATWPSEIMRIAKEFQNDPVTVEIKSAQRTIDTVEQLYYEVPRGKKANALRVLLNHY 241 Query: 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 303 D + +IF TK E+ L ++ + AL+GDM Q R + +E+ + G + ILIATD Sbjct: 242 DPELCMIFANTKKMVDELQGELNKHDIKACALHGDMKQEFRSRVMEQFRSGSMPILIATD 301 Query: 304 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVE-NRERRLLRNIER 362 VAARG+DV+ + LV+N+DIP D+E Y+HRIGRTGRAG+ G A+ + R+R L+NI R Sbjct: 302 VAARGIDVDDVDLVINFDIPQDNEYYIHRIGRTGRAGKKGLAITLISGGRQRSELKNIMR 361 Query: 363 TMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLE 422 K I LP + + + + V+ + D+ + +++ AEG + +E Sbjct: 362 YTKTNIKHHALPTSAQMQAHNRKAYIEGVKLACDEGVTDESMEIANEL--LAEG--IAVE 417 Query: 423 TLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRD 482 + +AL+ M + + E+ +R D Sbjct: 418 NIISALISMTY------------------------------KNEIIDIEEEEHVKRYAAD 447 Query: 483 VGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVL 542 + L + +G+ DGV+ +IV AI+ E ISS+ IG I + ++ S +++ VL Sbjct: 448 FEAVTL-KFSIGKQDGVKTGNIVAAISEECGISSKAIGRIDVRSNFSLVDVDAAKVDLVL 506 Query: 543 QHFTRTRILNKPMNMQL 559 + R I + +++++ Sbjct: 507 SNMQRAHIRGREVSVEI 523 >UniRef50_A5FH88 DEAD/DEAH box helicase domain protein n=21 Tax=Bacteroidetes RepID=A5FH88_FLAJ1 Length = 634 Score = 344 bits (883), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 220/637 (34%), Positives = 344/637 (54%), Gaps = 40/637 (6%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLL-NGRDVLGMAQTGSGKTAAFSLPLLQ 66 F LGL +L+A+ DLG+E PS +Q + IP LL D++ +AQTG+GKTAAF PL+Q Sbjct: 4 FEQLGLNESLLKAILDLGFENPSEVQEKAIPLLLEKDTDMVALAQTGTGKTAAFGFPLIQ 63 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 +D + + Q LVL+PTREL +Q+ + ++SK+ +G+NVVA+YGG Q R +++G Sbjct: 64 KIDADNRNTQALVLSPTRELCLQITNELKNYSKYEKGINVVAVYGGASITEQAREIKRGA 123 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 QI+V TPGR+ D + RG +++ + +LDEADEML MGF ED+ +I++ P+ T LF Sbjct: 124 QIIVATPGRMQDMINRGLVNIKNIDYCILDEADEMLNMGFYEDIVSILSDTPDQKNTWLF 183 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SATMP+ + RI ++FM EP E+ + + + +S ++ V + EAL R +A Sbjct: 184 SATMPQEVARIAKQFMSEPVEITVGAKNSGSATVSHEFYLVNARDRYEALKRLADANPDI 243 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 +++F RTK T VAE L +GY++AAL+GD++QA R+ ++ + ++ +L+ATDVAA Sbjct: 244 FSVVFCRTKRDTQAVAEKLIEDGYSAAALHGDLSQAQRDGVMKSFRGRQIQMLVATDVAA 303 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RG+DV+ ++ VVNY +P + E+Y HR GRTGRAG+ G +++ V E R + +IER +K Sbjct: 304 RGIDVDNVTHVVNYQLPDEIETYNHRSGRTGRAGKLGTSIVIVTKSELRKISSIERIIKQ 363 Query: 367 TIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAA 426 E +P+ + + +L A K++ ++D Y ++ + EEL Sbjct: 364 KFEEKAIPSGIEICEIQLLHLANKIKDTEVDHEIDNYLPAINNVLEDLSKEEL------- 416 Query: 427 ALLKMAQGERTLIVPP-----DAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERR 481 + KM E + D + E R+R D PR+ N+ G + R+ Sbjct: 417 -IKKMVSVEFNRFITYYKKNRDISTQSSGERRERGDSEPREFNNNGAVRYFVNIGSRDNF 475 Query: 482 DVGDMQLY---RIEVGRDD--GVEVRHIVGAIANEGDISSRY---IGNIKLFASHSTIEL 533 D ++ Y +++GRDD V+V+ + + + + + N++L +E+ Sbjct: 476 DWMSLKDYLKETLDLGRDDVFKVDVKEGFSFFNTDPEHTDKVMDILNNVQLEGRRINVEI 535 Query: 534 PKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGF-----GGERREG-GR 587 K G H + G+ P R G G GF RREG G Sbjct: 536 SKNDGGGRRDH-NNRGGGRNSGGQRREGNFAPR----REGSGGGFRSDRNSAPRREGSGG 590 Query: 588 NFSGERREGGRGDGRRFSGERREG---RAPRRDDSTG 621 F +R R G R R EG RAPRR +S G Sbjct: 591 GFRSDRNSAPREGGFR----RNEGGSDRAPRRSESFG 623 >UniRef50_C0ZI64 Putative ATP-dependent RNA helicase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZI64_BREBN Length = 493 Score = 343 bits (879), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 163/364 (44%), Positives = 244/364 (67%), Gaps = 1/364 (0%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +FA G + +++ + DL Y++P+ IQ E IP ++ G+D++G AQTG+GKTAAF LP+L Sbjct: 4 SFASFGFRPELMQGIQDLYYKEPTQIQEEAIPLIMEGKDLIGQAQTGTGKTAAFMLPILN 63 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 LD + Q L+L PTREL++Q+A+ + KH+ VNV++L+GG D QL L++ Sbjct: 64 ALDEGKRDIQALILTPTRELSIQIAKEVEKLGKHL-NVNVLSLHGGTDIDKQLSKLKETV 122 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 QIVVGTPGR+LDH+KRG+L ++S LVLDEAD+M+ MGF+EDVE ++ P Q LF Sbjct: 123 QIVVGTPGRVLDHMKRGSLHFGRISTLVLDEADKMMEMGFLEDVEQVIVHTPSQRQVLLF 182 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SATMP+ ++++ RFMK+P ++I+ T I Q Y+ V K +ALV LE E Sbjct: 183 SATMPDLVKKLAHRFMKQPPHIKIEGKQKTVERIEQFYYVVNQSDKTDALVDVLEQEQPF 242 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 I+F T+ ++ L+ NG ++ AL GD++Q REQ +++ ++ R LIATD+AA Sbjct: 243 LTIVFANTQVRVQQLTARLQENGLSAKALYGDLSQNKREQLMKQFREIRFQFLIATDIAA 302 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RGLDVE ++ V+NYD+P D +SY+HR+GRTGRAG+ G+A+ + R++ L+ + K Sbjct: 303 RGLDVEGVTHVINYDLPNDVDSYIHRVGRTGRAGQKGKAISLISPRQKNLMARFAKATKA 362 Query: 367 TIPE 370 +I E Sbjct: 363 SIEE 366 >UniRef50_Q3AFI3 ATP-dependent RNA helicase, DEAD box family n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AFI3_CARHZ Length = 430 Score = 342 bits (878), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 178/384 (46%), Positives = 255/384 (66%), Gaps = 2/384 (0%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F LGL P+L+A+NDLG+E P+PIQ E IP +L G +++G A TG+GKTAA+ LP+LQ Sbjct: 4 FKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQR 63 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 + KA Q+L++ PTRELA+QVA+ + K+++ V +A+YGGQ + Q+R LRQG + Sbjct: 64 IQRGKKA-QVLIVTPTRELALQVADEVAKLGKYLK-VRALAVYGGQAIERQIRGLRQGVE 121 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 ++VGTPGR+LDH+ R T +++ ++LDEADEML MGFI+D+E I+ + QT LFS Sbjct: 122 VIVGTPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQTLLFS 181 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 AT+P I+ I ++F+ + V++ T P I Q Y+ + K E LV L +E Sbjct: 182 ATLPAPIKTIIKKFLGGYKTVKLVGREKTVPAIRQVYYELPETEKIEGLVSILNSELPIQ 241 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 AI+F RTK EV E L GY + L+GDM+Q R QT++ K G+ ++L+ATDVAAR Sbjct: 242 AIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVATDVAAR 301 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 GLD+ +S V+N+DIP + ESY+HRIGRTGRAGR G+A+ + RER+LL+ IE + Sbjct: 302 GLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRERKLLKAIEEAINKR 361 Query: 368 IPEVELPNAELLGKRRLEKFAAKV 391 + LP L + R +K A K+ Sbjct: 362 LKREILPEPVDLEEARFKKIAKKI 385 >UniRef50_Q8YXJ0 ATP-dependent RNA helicase n=24 Tax=Cyanobacteria RepID=Q8YXJ0_ANASP Length = 513 Score = 342 bits (876), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 182/410 (44%), Positives = 265/410 (64%), Gaps = 12/410 (2%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +F +LG+ +E L LG+ P+ IQA+ IP LL+GRDV+G +QTG+GKTAAFSLP+L+ Sbjct: 4 SFPELGISQERVEHLEKLGFTAPTNIQAQAIPQLLSGRDVVGQSQTGTGKTAAFSLPILE 63 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 LDP+ KA Q +VL PTRELA+QV +AM F + G+ +A+YGGQ D Q+ L++G Sbjct: 64 RLDPQQKAVQAIVLTPTRELAIQVHDAMAQFVGN-SGLRTLAIYGGQSIDRQMLQLKRGV 122 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 IVVGTPGR++D L+RG L L ++ VLDEADEML MGFI+DVE I++Q P+ QTALF Sbjct: 123 HIVVGTPGRVIDLLERGNLKLDQVKWFVLDEADEMLSMGFIDDVEKILSQAPQDRQTALF 182 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQS------YWTVWGMRKNEALVRFL 240 SATMP +IR + +F++ P V ++ T I+Q +WT K AL L Sbjct: 183 SATMPPSIRMLVNKFLRSPVTVTVEQPKATPNKINQVAYLIPRHWT-----KARALQPIL 237 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 E ED + A+IFVRT+ E+ L+ G++ +GD++Q RE+ L R + ++ ++ Sbjct: 238 EMEDPETALIFVRTRRTAAELTSQLQAAGHSVDEYHGDLSQQARERLLTRFRSRQVRWVV 297 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATD+AARGLDV+++S V+NYD+P E+YVHRIGRTGRAG+ G A+ V+ ERR + Sbjct: 298 ATDIAARGLDVDQLSHVINYDLPDSVETYVHRIGRTGRAGKEGTAITLVQPFERRKQQIF 357 Query: 361 ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKI 410 ER ++ + +P + R + K +V++ L L + ++S++ Sbjct: 358 ERHVRQNWQLLSIPTRAQIEARHILKLQEQVREALAGERLASFLPIVSEL 407 >UniRef50_D0LYA3 DEAD/DEAH box helicase domain protein n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LYA3_HALO1 Length = 908 Score = 341 bits (875), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 192/458 (41%), Positives = 283/458 (61%), Gaps = 12/458 (2%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +FA+LGL+ +L+AL ++GY++P P+QA L+NGRDV+ ++TGSGKTA F +P++Q Sbjct: 63 SFAELGLQPELLQALEEMGYDRPMPVQAAVFQPLMNGRDVMVQSRTGSGKTAGFGIPVVQ 122 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 ++D K Q L+LAPTRELA+QV+ + +K +G+++ +YGG Q+ AL G Sbjct: 123 HIDAASKGAQALILAPTRELALQVSREIAQLAKP-KGLHIEPIYGGAPIKPQMDALAAGA 181 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP--EGHQTA 184 Q+V GTPGR+LDHL+R TLD + L+LDE DEML MGF E++E I+ +P E QT Sbjct: 182 QVVSGTPGRVLDHLRRKTLDPKNIRMLILDECDEMLSMGFQEEIERIIEHLPAKENRQTV 241 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 LFSAT+P+ I+RI RR M +P+E+ + + + DI SY+ V G+ + L++ L AE Sbjct: 242 LFSATIPDEIQRIARRHMTDPEEISLSTGNISVDDIDHSYYVVSGVARTRDLLKVLRAES 301 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 D+AIIF T+ T VA+ L+ GY++ A++ D+ Q RE+ ++R++D LD L+ATDV Sbjct: 302 PDSAIIFCNTREDTNTVAKFLQGQGYDAEAISSDLTQRDRERVMKRMRDRNLDFLVATDV 361 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 AARG+D+ +S V+NY P E YVHR GRTGRAG++G A+ V RE ++ Sbjct: 362 AARGIDISDLSHVINYTFPDSPEVYVHRTGRTGRAGKSGVAISLVGPRELGSFYYLKLIY 421 Query: 365 KLTIPEVELPNAELLG----KRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELD 420 K+ E +LP E +G R E+ AA V ++ + RAL +I + EGE + Sbjct: 422 KIRPEERDLPTNEEMGILDEGARFERVAALVSEEPGADS----RALARRIWQSDEGERI- 476 Query: 421 LETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDR 458 L +L A ER+ P A + E R D+R Sbjct: 477 FGALVQRVLADAPSERSKRSRPKAENTQRSEARRSDER 514 >UniRef50_UPI0001C311D7 DEAD/DEAH box helicase domain protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C311D7 Length = 481 Score = 341 bits (875), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 179/357 (50%), Positives = 240/357 (67%), Gaps = 1/357 (0%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 TTFADLGL AP+LEAL D+GYE PSPIQ + IP LL G D++G AQTGSGKTAAF LPL+ Sbjct: 2 TTFADLGLSAPVLEALRDVGYENPSPIQEQAIPPLLAGNDMIGQAQTGSGKTAAFGLPLM 61 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 + +DP + Q LVL PTREL +QV +A+ + +G++VVA++GG Q LR G Sbjct: 62 EYVDPSDRDVQALVLTPTRELCIQVTQALRSYGAR-KGIDVVAVFGGAPIRSQQAQLRAG 120 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 QIVVGT GR+ D + R +L L +VLDEADEML +GF+EDVE I+A P QTAL Sbjct: 121 GQIVVGTVGRVKDLISRHSLMLHGTRFVVLDEADEMLDLGFLEDVEKILALTPGSRQTAL 180 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSATMP IR+++ R++ P V+++++ T + Q + K + L LE+E Sbjct: 181 FSATMPPEIRKLSERYLYNPVHVKVRAATLTVDTVEQFSLEMSQRDKPDMLGTVLESEKP 240 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 D AI+FVRTK ++ L G N AL+GDM+Q R+ + K GRL IL+ATDVA Sbjct: 241 DQAIVFVRTKIRCDQLYRTLRDRGMNVKALHGDMSQGQRDGVMLSFKSGRLPILVATDVA 300 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 ARGLD+ ++ VVN+D+P + YVHRIGRTGR GR+GRA+ F +++++R + IER Sbjct: 301 ARGLDISSVTHVVNFDVPTSPDVYVHRIGRTGRVGRSGRAITFYDSKQKRDIEAIER 357 >UniRef50_B1V958 DEAD/DEAH box helicase-like n=4 Tax=Candidatus Phytoplasma RepID=B1V958_PHYAS Length = 564 Score = 340 bits (871), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 190/534 (35%), Positives = 302/534 (56%), Gaps = 19/534 (3%) Query: 16 PILE----ALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE 71 PILE AL +L + + +PIQA IP ++ G DV+G AQTG+GKT AF +P+++ +D + Sbjct: 9 PILEQTKKALQELNFIEATPIQALVIPEIIQGHDVIGQAQTGTGKTFAFGIPIIEKIDYK 68 Query: 72 LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVG 131 L Q L+L PTREL +QV E + ++ + + ++GG+ Y Q RAL P +++ Sbjct: 69 LSKTQSLILCPTRELTLQVYEELKKLLRYYPQIRIAVVFGGESYTKQFRALESKPHLIIA 128 Query: 132 TPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMP 191 TPGR++DH++RG +DLS L L LDEADEML+MGF E +ETI+ QIPE QT LFSAT+P Sbjct: 129 TPGRVIDHIERGKIDLSALKILTLDEADEMLKMGFQEALETILKQIPEERQTVLFSATLP 188 Query: 192 EAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIF 251 +I++I ++ K + +++ I Q Y+ V KN+ LVR L+ + + I+F Sbjct: 189 PSIKQIASKYQKNTKILQVPVKKLAVNAIEQYYFLVKEFDKNKLLVRLLDLKRDYSTILF 248 Query: 252 VRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDV 311 TK E+ L+ G+ + A++GD+ Q R+ + + G++ ILIATDVAARG+D+ Sbjct: 249 ANTKKDVDEITSFLQDKGFLADAVHGDLKQNQRQYVMNNFRKGKIKILIATDVAARGIDI 308 Query: 312 ERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEV 371 I +VVNYD+P + E YVHRIGRTGRAG+ G A F+ R+ L+ +E +K + + Sbjct: 309 SDIKMVVNYDLPHEDEVYVHRIGRTGRAGKKGLAYSFISPRKFSQLKKLEYYLKEKVKFL 368 Query: 372 ELPNAELLGKRRLEKFAAKVQQQLE-SSDLDQYRALLSKIQPTAEGEELDLETLAAALLK 430 E+P+ E + K+ LE F KV +E +S + ++ K+ E++ ++ L + Sbjct: 369 EIPSVEEIKKQILENFEQKVIDIIEKNSQENANNPMIEKLLQKFSSEQI-IQGLLTNIQP 427 Query: 431 MAQGERTLIVPPDAPMRPK----------REFRDRDDRGPRDRNDRGPRGDREDRPRRER 480 A+ T I+PP P+ R F ++ + P+ + ++ Sbjct: 428 KAKN-YTDIIPPRMTFTPRETFNNNSFGNRRFGEKRFQNPKFSSYNSYNSYNSYNSYSQK 486 Query: 481 RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELP 534 R+ D I +G+ D + ++ + +E I + IGNIK + E+P Sbjct: 487 RN--DFIEATINLGKKDNINPTVLIRLLKDEYQIYGKNIGNIKHLTHETIFEIP 538 >UniRef50_B2UNH8 DEAD/DEAH box helicase domain protein n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UNH8_AKKM8 Length = 604 Score = 339 bits (870), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 222/610 (36%), Positives = 326/610 (53%), Gaps = 31/610 (5%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 ++F+ LG+ ILEA+ LG++ PS IQ + IP + G D++G++ TGSGKT AF++P L Sbjct: 5 SSFSALGISPEILEAIEVLGFDTPSSIQEQAIPAAIGGADIVGLSHTGSGKTLAFAIPAL 64 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 + +DPE + Q+L L PTRELAVQ+ + + M GV+ V +YGG + QL ALR+G Sbjct: 65 ECIDPEERCVQVLALCPTRELAVQICREVDKLALFMDGVSAVPIYGGSSFRPQLDALRRG 124 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 Q VVGTPGR++D ++ G L L L L+LDEADEML MGF+ED+E I +PEG QT Sbjct: 125 VQFVVGTPGRVMDLMESGALRLDGLRMLILDEADEMLDMGFLEDIERIADAMPEGKQTLF 184 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSATM I R+ RFMKEP ++ I+ T P I Q Y+ V + E L R L+ Sbjct: 185 FSATMSPEISRLVSRFMKEPVQISIERPTLTVPTIEQVYYEVVFSSRIEVLSRLLDTGKI 244 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 ++F TK +V + L GY L+GDM Q +RE+ ++ + G L +L+ATD+A Sbjct: 245 KMGLVFANTKKVVDDVVDGLTARGYPVDRLHGDMPQMMRERVMDSFRKGSLRLLVATDIA 304 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARGLDV+ + VVN+++P D E YVHRIGRT RAGR G+A+ FV R+ L+ IER + Sbjct: 305 ARGLDVDDVDAVVNFELPRDPEDYVHRIGRTARAGRKGKAITFVGRRDFSLMSRIERFIG 364 Query: 366 LTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLA 425 + + + A + + R E + ++L+ A+L + E + Sbjct: 365 VKLTPEPVLTAVQVDQLRTESLVDDILERLKPD------AVLPEELKEVEAAPEAMAAAL 418 Query: 426 AALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRR--ERRDV 483 LL+ +P D P R R R P+ G+ + P++ + Sbjct: 419 FDLLRERTHREVQPIPEDKPARRAR-------RMPQT-------GEEAESPQKGDSWQHK 464 Query: 484 GDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQ 543 GD + GR G+ + I G N ++ +G+I++F HS IE+ + +L+ Sbjct: 465 GDTVTLFMNGGRMIGLRPKDIAGLFYNTVEMEKGAVGDIRIFPKHSLIEVDASVAPLLLE 524 Query: 544 HFTRTRILNKPMNMQLLGDAQPHTG---GERRGGG--RGFGGERREGGRNFSGERREGGR 598 + +N++ A ++G RR GG + GER R SG R G R Sbjct: 525 ALATATVCGYEVNVREDKGAPEYSGTPRSSRRNGGFRNSYRGERDRSDR--SGFR--GNR 580 Query: 599 GDGRRFSGER 608 G R GER Sbjct: 581 GGFRSDRGER 590 >UniRef50_B0SU57 ATP-dependent RNA helicase, DEAD-box family (DeaD) n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SU57_LEPBP Length = 534 Score = 339 bits (870), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 195/488 (39%), Positives = 280/488 (57%), Gaps = 25/488 (5%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F GL+ IL+ + + G+E PSPIQ + IP +L G+D++ AQTG+GKTAA+ LP L Sbjct: 17 FQSFGLRPEILQGITEAGFESPSPIQKQAIPLVLEGKDLIAQAQTGTGKTAAYGLPCLNR 76 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 + E Q+LVL PTRELA+QV++ + KH+ G+ +YGG Y Q+ + +G Q Sbjct: 77 IKVE-DGMQVLVLTPTRELALQVSDELFKLGKHL-GIKTTTIYGGSSYSKQITQVAKGAQ 134 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 + V TPGRLLD LK L K S ++LDEADEML MGF++D+E+I +P QT LFS Sbjct: 135 VAVATPGRLLDLLKGKELKNFKPSMVILDEADEMLDMGFMDDIESIFNLLPTKRQTLLFS 194 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 ATMPE I+++ ++ P V+I ++ + +I Q Y+ + + A+VR L+ E+ Sbjct: 195 ATMPEPIKKLASKYQTHPAHVKIAATEKSSKNIEQVYYIIDEAEREIAVVRILDYENPFK 254 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 AIIF +TK ++ L GY AL+GD+NQ REQ L+ L DGR+ IL+ATDVAAR Sbjct: 255 AIIFTKTKKEADDLKSTLSFKGYPVEALHGDLNQKQREQVLKSLHDGRVKILVATDVAAR 314 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 GLDV+ +SLV+NY +P DSESY HRIGRTGRAG++G+A+ V RE R L ++ T Sbjct: 315 GLDVKDLSLVINYHLPFDSESYTHRIGRTGRAGKSGKAVTLVTTRESRALLRLKGTSGTN 374 Query: 368 IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAA 427 + LP + + R E F KV +D + A+L K+ + + L+ L+ Sbjct: 375 LTIAALPTKKEVHLSREEDFLKKVVDTEIHADAE---AVLEKLLKLEDKRSIALKLLSKM 431 Query: 428 L--LKMAQGERTLIVPPDAPMRP------------------KREFRDRDDRGPRDRNDRG 467 L K++ E+ P + P R R DR++R Sbjct: 432 LDNTKISGPEKIGKTPAEWSEMPPGGGSGGRRRRDDGGGSGGGRGGYRGARSNSDRSERS 491 Query: 468 PRGDREDR 475 RGDR++R Sbjct: 492 DRGDRKER 499 >UniRef50_D2LXV0 DEAD/DEAH box helicase domain protein n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LXV0_BACS4 Length = 500 Score = 338 bits (868), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 181/443 (40%), Positives = 275/443 (62%), Gaps = 9/443 (2%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F DL ++ I+EA+ +G+E+ +PIQ + IP G+D++G AQTG+GKT AF +P ++ Sbjct: 4 FKDLNIQPSIVEAIEKMGFEETTPIQEKVIPLGKEGQDIIGQAQTGTGKTVAFGIPCVEQ 63 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 + E K PQ LVL PTRELA+QVAE + + ++G+ + +YGGQ Q+ AL++ PQ Sbjct: 64 VVVEEKHPQALVLTPTRELAIQVAEELNKLGQ-VKGIKALPIYGGQEITRQITALKKRPQ 122 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 I+V TPGR +DH++R T+ L +VLDEADEML MGFIED+ETI+ ++P QT LFS Sbjct: 123 IIVATPGRYMDHMRRKTIRPEFLKIVVLDEADEMLSMGFIEDIETILQEVPGERQTLLFS 182 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 ATMP ++ I RFM +P + +++ T +I Q Y + K + L L+ E + Sbjct: 183 ATMPPKLKTIADRFMNKPVSIAVKAKQLTVENIEQRYIALSEKEKFDTLCNLLDMETPEL 242 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 AIIF RTK E+ E+L G+ L+GDM Q R+Q + + K G +D+++ATDVAAR Sbjct: 243 AIIFGRTKRRVDELTESLSIRGFAVEGLHGDMKQERRDQVIRKFKRGSIDVMVATDVAAR 302 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 GLDV +S V+N+D+P DSESYVHRIGRTGRAG+ G + FV ++E+ LR IE + + Sbjct: 303 GLDVNDVSHVINFDLPQDSESYVHRIGRTGRAGKKGISYSFVTHKEKDHLRYIEESTRQK 362 Query: 368 IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAA 427 + +V+ P + R ++ ++++ + ++ Q ++ EE D L +A Sbjct: 363 MKQVDAPTLADAMRGRHKQAVNELKKAVNNAASKQLTGEAKQLL-----EEFDPVVLVSA 417 Query: 428 LLKMAQGE---RTLIVPPDAPMR 447 L+M E + + + +AP+R Sbjct: 418 ALQMVTKEPSKKQVKITGEAPVR 440 >UniRef50_Q26CN9 ATP-dependent RNA helicase n=2 Tax=cellular organisms RepID=Q26CN9_9BACT Length = 644 Score = 338 bits (868), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 200/542 (36%), Positives = 310/542 (57%), Gaps = 21/542 (3%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLL-NGRDVLGMAQTGSGKTAAFSL 62 + F LGL P+L L D+G+E P+ IQ + IP LL + D +G+AQTG+GKTAAF L Sbjct: 11 YLKNFEVLGLSQPLLNGLADMGFENPTEIQQQSIPILLKHDGDFIGLAQTGTGKTAAFGL 70 Query: 63 PLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 PLL +D + Q L+LAPTRELA Q+ M SKH+ +NVV ++GG Q+R + Sbjct: 71 PLLDLIDVNSREVQALILAPTRELAQQICGQMEQMSKHLGKLNVVPVFGGANIMNQIRDI 130 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 R+G QI+V TPGRL+D +KR + L L +VLDEADEML MGF ED++ I+++ G Sbjct: 131 RRGAQIIVATPGRLMDLMKRREVKLDALKYMVLDEADEMLNMGFKEDIDFILSKSDTGRN 190 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 LFSATM I+RI +M +P+EVRI +I + K EAL RFL+ Sbjct: 191 IWLFSATMAREIKRIVDTYMVQPEEVRINPKNIVNKNIEHQSIQLKASDKIEALRRFLDY 250 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 ++ ++F RTK T VA+ L NGY + AL+GDM+QA R+ ++R ++ L +LIAT Sbjct: 251 DEDMFGVVFCRTKRDTQNVADQLNNNGYATEALHGDMSQAQRDAAMKRFRNKNLKLLIAT 310 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 DVAARG+DV+ I+ V+++ +P D E Y HR GRT RAG+ G ++ + + R L+ I Sbjct: 311 DVAARGIDVDDITHVIHFALPDDPEFYTHRSGRTARAGKKGVSIALITRGDNRKLKFIAS 370 Query: 363 TMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLE 422 + + + E+P E + ++R+ +++ + +Q + +D+ L++ +Q + ++ E Sbjct: 371 KLGIEFTQGEVPALEAITQKRISRWSENMIKQEINEKIDE--QLVNAVQESF--ADVTKE 426 Query: 423 TLAAALLKMAQGERTLIVPPD--APMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRER 480 + A LL E I + + + + + RDRDD R+R R RG E Sbjct: 427 EIIAKLL---TKEYNSIYKRNSISDLNDRSKGRDRDDSPRRERGKRTSRGTEE------- 476 Query: 481 RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGE 540 M+ Y I +G D + ++G + + IS IG I + +HS +++ + + + Sbjct: 477 ----GMKTYFINLGLKDDINKGALLGYVCDTTGISGAQIGRIVMDKTHSYMDVAEDVASQ 532 Query: 541 VL 542 +L Sbjct: 533 IL 534 >UniRef50_C6X450 Cold-shock DEAD-box protein A n=1 Tax=Flavobacteriaceae bacterium 3519-10 RepID=C6X450_FLAB3 Length = 571 Score = 338 bits (866), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 200/589 (33%), Positives = 322/589 (54%), Gaps = 56/589 (9%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHL-LNGRDVLGMAQTGSGKTAAFSLPLLQ 66 F + L IL+A+ +LG+E P+ IQ + IP + + RD++ +AQTG+GKTAAFSLP+L Sbjct: 4 FTETNLSPEILKAIGELGFESPTEIQKQTIPFISTDIRDLIALAQTGTGKTAAFSLPILD 63 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 +D + Q LVL PTREL +Q+ + + ++SK+M + A+YGG Q+R+LR P Sbjct: 64 MIDDGSRKIQFLVLCPTRELCLQITKDIKNYSKYMNNIKTTAVYGGSSITDQIRSLRDKP 123 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 QI+VGTPGR++D + R LD S++ LVLDEADEML MGF +D+ETI+ + PE T LF Sbjct: 124 QIIVGTPGRVIDLINRKALDFSEIQWLVLDEADEMLSMGFKDDLETILRETPETKHTYLF 183 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SATM + + RI++ ++ P + + S + +I ++ V K EAL R ++A Sbjct: 184 SATMNKEVERISKSYLTAPHRISVGSINEVKKNIKHEFYVVGYRHKKEALKRLIDANPNQ 243 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 +I+F RT+ T EVA+ L +NGY + AL+GD++QA R+ +++ + +DIL+ATDVAA Sbjct: 244 YSILFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILVATDVAA 303 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RGLDV+ ++ V++Y +P D E +VHR GRTGRAG+ G ++ ++ E R L+ I+ + K+ Sbjct: 304 RGLDVDSLTHVIHYSLPDDPEVFVHRSGRTGRAGKDGISMSLIKPEESRKLKQIKMSTKI 363 Query: 367 TIPEVELPNAELLGKRRL-EKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLA 425 I E ++P + + K ++ F + LE + D AL+ + E E L Sbjct: 364 DIVEKKVPTGDAIIKAQVGGVFEKLFTEHLEFFNFDD--ALIPDLS------EFTKEELV 415 Query: 426 AALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPR---------------- 469 +L++ E + ++D++D + N Sbjct: 416 HKMLQLQLRELAMF------------YKDKNDLADQKFNADDRGGDSRRDRDRDRGRDRE 463 Query: 470 --------------GDREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDIS 515 G RE R R+ RR+ DM + +G+ D ++ ++ I N+ Sbjct: 464 RGGDRGERREFSRDGGRESRDRKPRRNNTDMVRFFFNLGKKDQLKKMDML-EIINKSTAK 522 Query: 516 SRY---IGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLG 561 S+ IG+I++ S E+ K EV++ + K M ++ G Sbjct: 523 SKKRPDIGDIEILEKFSFFEVEKSFKDEVMKGMQSQKFKGKEMRAEIAG 571 >UniRef50_Q0W8H7 ATP-dependent RNA helicase n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W8H7_UNCMA Length = 497 Score = 337 bits (865), Expect = 6e-91, Method: Compositional matrix adjust. Identities = 189/450 (42%), Positives = 280/450 (62%), Gaps = 19/450 (4%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F +L L I+ A++++G+E+ +PIQ + IP + G+D++G A+TG+GKTAAF +P+++ Sbjct: 4 FTELNLTPSIVRAVHEMGFEEATPIQEQAIPLAMEGKDLIGQARTGTGKTAAFGIPMVEA 63 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 + P K Q LV+ PTRELAVQVAE +T K +RG+ VA+YGGQ + Q++AL + P Sbjct: 64 IRPTSKGVQGLVVVPTRELAVQVAEELTRIGK-VRGIRSVAIYGGQDFRSQVKALEELPH 122 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 IVVGTPGRLL+H++R + S + VLDEAD+ML MGFI++ E I+ ++PE QT LFS Sbjct: 123 IVVGTPGRLLEHMRREYVRTSDIRIAVLDEADKMLDMGFIDEAEKILKKLPERRQTLLFS 182 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 AT+ ++ + R+++K+P+ + + T P Q Y + +K EAL R L+ E + Sbjct: 183 ATLSPPVQMLARKYLKDPELIEFEEEGITVPTTVQYYIEMPEKQKFEALTRLLDQEKPEL 242 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 AI+FV T+ E+A+AL GY++ L+GD+ Q RE TL++ K G + IL+ATDVAAR Sbjct: 243 AIVFVATRIRVGELAKALVERGYHALGLHGDLLQYQRENTLDKFKAGEVSILVATDVAAR 302 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 GLD++ ++ V N+DIP D +SYVHRIGRTGRAG AG A FV +++ L IE+ + Sbjct: 303 GLDIQGVTHVYNFDIPRDPDSYVHRIGRTGRAGNAGTATTFVTPKDKTALEAIEQAIDHQ 362 Query: 368 IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYR----ALLSKIQPTAEGEELDLET 423 I P ++ +E K++ ++E DL YR +LL+ P Sbjct: 363 ITSKPAPGGAESTEKNIEAVIEKIRGEIEIRDLSFYRDYAESLLNSGDPAT--------I 414 Query: 424 LAAALLKMAQGER------TLIVPPDAPMR 447 LAAAL +++ E T I P AP R Sbjct: 415 LAAALRILSKAEEKPQIRLTEIPEPVAPDR 444 >UniRef50_Q5HME0 Probable DEAD-box ATP-dependent RNA helicase SERP1688 n=56 Tax=Staphylococcus RepID=Y1688_STAEQ Length = 509 Score = 337 bits (863), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 181/425 (42%), Positives = 272/425 (64%), Gaps = 8/425 (1%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 F +LG+ ++ L +G+++P+PIQ + IP+ L G D+LG AQTG+GKT AF +PL++ Sbjct: 3 NFKELGISDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIE 62 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 + + + Q L+LAPTRELA+QVAE + +FSK + V VV ++GG + Q++AL++GP Sbjct: 63 KVVGQ-QGVQSLILAPTRELAMQVAEQLREFSKGQK-VQVVTVFGGMPIERQIKALKRGP 120 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP-EGHQTAL 185 QIVVGTPGR++DHL R TL + L+LDEADEM+ MGFI+D+ IM +IP E QT L Sbjct: 121 QIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQTML 180 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSATMP+AI+ + ++FMK P+ ++ ++ + P I + Y V + K + FL+ Sbjct: 181 FSATMPKAIQELVQQFMKAPKIIKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFLDVHQP 240 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 + AI+F RTK E+ AL GY + L+GD+ QA R + L++ K+ ++DIL+ATDVA Sbjct: 241 ELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVA 300 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARGLD+ +S V N+DIP D+ESY HRIGRTGRAG+ G A+ FV E +R IE Sbjct: 301 ARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDVNN 360 Query: 366 LTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLA 425 + + P+ + + K R + +VQ + + + + + S++ +E D L Sbjct: 361 RRMKALRPPHRKEVLKAREDDIKDRVQNWMSRENEPRLQRISSELL-----KEYDSTELV 415 Query: 426 AALLK 430 A+LL+ Sbjct: 416 ASLLQ 420 >UniRef50_C0YHR5 ATP-dependent RNA helicase n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YHR5_9FLAO Length = 562 Score = 336 bits (861), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 162/371 (43%), Positives = 251/371 (67%), Gaps = 1/371 (0%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNG-RDVLGMAQTGSGKTAAFSLPLLQ 66 F + L IL+A+ +LGYE P+ IQ + IP +L+ RD++ +AQTG+GKTAAFSLP+L Sbjct: 4 FTETNLSPDILKAIGELGYESPTEIQKQTIPFILSDIRDLIALAQTGTGKTAAFSLPILD 63 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 +D + Q+LVL PTREL +Q+++ + ++SK+M+ + A+YGG Q+R+L+ P Sbjct: 64 MIDDTSRKIQLLVLCPTRELCLQISKDIKNYSKYMKDIKTTAVYGGSSIVEQMRSLKDKP 123 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 QI+VGTPGR++D + R LD S + LVLDEADEML MGF +++ETI+++ PE QT LF Sbjct: 124 QIIVGTPGRVIDLINRKALDFSAIHWLVLDEADEMLSMGFKDELETILSETPETKQTFLF 183 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SATM + + RI++ ++ +P + + S + +I+ Y+ V +K EAL R ++A Sbjct: 184 SATMNKEVERISKNYLTKPHRISVGSINEVKKNITHEYYVVGYRQKKEALKRLIDANPNQ 243 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 +IIF RT+ T EVA+ L +NGY + AL+GD++QA R+ +++ + +DIL+ATDVAA Sbjct: 244 YSIIFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILVATDVAA 303 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RGLDV ++ V+++ +P D E +VHR GRTGRAG+ G ++ ++ E R L+ I+ K+ Sbjct: 304 RGLDVNSLTHVIHFSLPDDPEVFVHRSGRTGRAGKDGISMALIKPEESRKLKQIKSATKI 363 Query: 367 TIPEVELPNAE 377 I E +P + Sbjct: 364 EIHERTIPTGD 374 >UniRef50_A4C1L2 ATP-dependent RNA helicase n=2 Tax=Polaribacter RepID=A4C1L2_9FLAO Length = 609 Score = 335 bits (858), Expect = 5e-90, Method: Compositional matrix adjust. Identities = 199/543 (36%), Positives = 309/543 (56%), Gaps = 29/543 (5%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGR-DVLGMAQTGSGKTAAFSLPL 64 +TF +LGLK PI +AL DLGYE+P+ IQ + IP +++ R D+ AQTG+GKTAAFSLP+ Sbjct: 2 STFLELGLKEPINKALTDLGYEQPTVIQEKAIPQIISSRSDLKAFAQTGTGKTAAFSLPI 61 Query: 65 LQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 L+ LD Q ++L+PTRELAVQ+ + DF K++ V V +YGG + Q+R+L++ Sbjct: 62 LELLDSNSGNVQAIILSPTRELAVQIGNNIKDFCKYLPDVKVTTVYGGSSMEDQIRSLKR 121 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 G QIVVGTPGR +D +KR L L + LVLDEADEML MGF ++++ ++ P+ QT Sbjct: 122 GSQIVVGTPGRTVDLIKRRALKLGNVKWLVLDEADEMLNMGFKDELDKVLEATPDTKQTL 181 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 LFSAT P+ + I + +M +P E+ +S Y++V + AL R + Sbjct: 182 LFSATFPKEVESIAKNYMTKPVEITSGQKNQGADSVSHEYYSVTERTRYPALKRIADLNP 241 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 AIIF RT+ T EVA+ L ++GY++ AL+GD++Q R+ + + + + IL+ATDV Sbjct: 242 DIYAIIFCRTRRETQEVADNLIKDGYSADALHGDLSQGQRDSVMGKFRKKTIQILVATDV 301 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 AARGLDV ++ V+N+ +P E+Y HR GRTGRAG G +++ V +E+ LR IE+ + Sbjct: 302 AARGLDVTELTHVINHKLPDQIENYTHRSGRTGRAGNTGISIVLVNGKEKGKLRPIEKII 361 Query: 365 KLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETL 424 + E ++P+ + + + +L KV +E ++ Q L I EG LD E L Sbjct: 362 QKKFTEAKVPSGKDICQNQLMSLIDKV-VNIEVNET-QINDFLPSIYEKLEG--LDREQL 417 Query: 425 AAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVG 484 + + + L +A +D +D +D + R R + Sbjct: 418 IQKFVSL-EFNTMLAYYENA--------KDLNDLSSKDNS-------------RARTENE 455 Query: 485 DMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRY-IGNIKLFASHSTIELPKGMPGEVLQ 543 +M + I +GR D + ++G I NE +I + IG+I + + S E+ K + L+ Sbjct: 456 NMTRFFINIGRKDNLNPGKLIGLI-NEQNIGDKVEIGSIDILDTFSFFEIDKNFEDKTLE 514 Query: 544 HFT 546 F+ Sbjct: 515 AFS 517 >UniRef50_C5PZD1 ATP-dependent RNA helicase n=5 Tax=Bacillales RepID=C5PZD1_STAAU Length = 517 Score = 334 bits (857), Expect = 5e-90, Method: Compositional matrix adjust. Identities = 187/468 (39%), Positives = 288/468 (61%), Gaps = 9/468 (1%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 F +LG+ +++L +G+++P+PIQ + IP+ L G D+LG AQTG+GKT AF +PL++ Sbjct: 14 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 73 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 + + + Q L+LAPTRELA+QVAE + +FS+ +GV VV ++GG + Q++AL++GP Sbjct: 74 KVVGK-QGVQSLILAPTRELAMQVAEQLREFSRG-QGVQVVTVFGGMPIERQIKALKKGP 131 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH-QTAL 185 QIVVGTPGR++DHL R TL + L+LDEADEM+ MGFI+D+ IM +IP QT L Sbjct: 132 QIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTML 191 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSATMP+AI+ + ++FMK P+ ++ ++ + P I + Y V + K + FL+ Sbjct: 192 FSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDVHQP 251 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 + AI+F RTK E+ AL GY + L+GD+ QA R + L++ K+ +++IL+ATDVA Sbjct: 252 ELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVA 311 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARGLD+ +S V N+DIP D+ESY HRIGRTGRAG+ G A+ FV E +R IE Sbjct: 312 ARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDANG 371 Query: 366 LTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLA 425 + + P+ + + + R + KV+ + + + L +I E D++ +A Sbjct: 372 RKMSALRPPHRKEVLQAREDDIKEKVENWMSK----KSESRLKRISTELLNEYNDVDLVA 427 Query: 426 AALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDR--GPRGD 471 A L ++ + + V R+ R+ G R+RN + P+ D Sbjct: 428 ALLQELVEANDEVEVQLTFEKPLSRKGRNGKPSGSRNRNSKRGNPKFD 475 >UniRef50_Q30PP0 DEAD/DEAH box helicase-like protein n=11 Tax=Bacteria RepID=Q30PP0_SULDN Length = 540 Score = 333 bits (853), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 188/482 (39%), Positives = 282/482 (58%), Gaps = 15/482 (3%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 TF DLGLK IL ++ D G+ PSPIQA IP +L GRD++G A TG+GKTAAF LP L Sbjct: 15 TFDDLGLKKEILRSVKDAGFTVPSPIQAAAIPFILAGRDIVGQAHTGTGKTAAFGLPALN 74 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 N++P ILV+ PTRELA QV++ + + +++ G V +YGG Y+ Q+ +++G Sbjct: 75 NINPN-DGVGILVITPTRELATQVSDELFKYGRNI-GARTVTVYGGSSYNRQIDLIQRGA 132 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 +VV TPGRLLD LK+ L S +VLDEADEML MGF++D+ I + +P QT LF Sbjct: 133 SVVVATPGRLLDILKKNLLKDFAPSIVVLDEADEMLDMGFLDDINEIFSYLPSNRQTLLF 192 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SATMP+ I+ + R + P+ + I TT DI+Q Y+ + +++A++R ++AE Sbjct: 193 SATMPKPIKLLAERILDNPEFISITKGETTNTDINQEYYVIEESERDDAIIRLMDAEACQ 252 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 +I+F RTK+ ++ L GY + L+GDM Q RE ++ K+ + +L+ATDVAA Sbjct: 253 KSIVFCRTKSEVDRLSNVLSSAGYLANGLHGDMEQRQRETVIKGFKNNGVKVLVATDVAA 312 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RG+ V+ IS V NY IP D ESYVHRIGRTGRAG G+A+ + E + L+ I+ + Sbjct: 313 RGIHVDNISHVFNYHIPFDPESYVHRIGRTGRAGTKGKAITLLTPLEFKELQRIKTKVGT 372 Query: 367 TIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAA 426 T+ +P+ L L+ A ++ E + D+ +L ++ E++D T+ Sbjct: 373 TMTHAFVPSKNDLRAINLKSIATSIE---EHNIYDEAHQILDMLK-----EDIDEPTIMF 424 Query: 427 ALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGP----RGDREDRPRRERRD 482 L+ M +R I P++ P + +R + R+ +G RG+R RP +R Sbjct: 425 KLVSMIL-DRQAIQGPNSIGIPAEKLAAILERADKRRDSKGGRGNFRGNRSARPSGDRNR 483 Query: 483 VG 484 G Sbjct: 484 SG 485 >UniRef50_B6YWR7 DEAD/DEAH box RNA helicase n=3 Tax=Thermococcus RepID=B6YWR7_THEON Length = 403 Score = 333 bits (853), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 178/371 (47%), Positives = 248/371 (66%), Gaps = 10/371 (2%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNG-RDVLGMAQTGSGKTAAFSLPLL 65 +F +LGL L A+ G+ +P+ IQ E IP LL+G D++G +QTG+GKTAAF+LP++ Sbjct: 2 SFENLGLSEATLVAVRRKGFSQPTDIQKEVIPRLLSGDADIIGQSQTGTGKTAAFALPII 61 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRG---VNVVALYGGQRYDVQLRAL 122 + +D + K+ Q ++LAPTRELA+QVA+ + K +RG V V A+YGGQ Q+RAL Sbjct: 62 EAIDEKEKSVQAIILAPTRELALQVADEI----KSLRGRKRVYVYAVYGGQPIGPQIRAL 117 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 +G +VVGTPGR+LDH++RGTLDLSK+ +LDEAD ML MGFI+D+E I + P+ + Sbjct: 118 ERGTHVVVGTPGRVLDHIRRGTLDLSKVKFFILDEADRMLDMGFIDDIEAIFRETPKKKR 177 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 +FSATMP I R+ RR+M + + +++ S + Q Y V RK L + L + Sbjct: 178 VLMFSATMPREILRLARRYMNDYEVIKVSSDELVPGMVEQEYIEVVPARKFSTLKKIL-S 236 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 +DF I+F TK T E++E L + GY++ ALNGDM+QA RE+T R K R IL+AT Sbjct: 237 DDF-YGIVFCATKRETRELSEKLRKQGYSAEALNGDMSQAARERTFWRFKTKRTRILVAT 295 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 DVAARGLDV+ IS +VNY +PM +E YVHRIGRTGR G+ G+A+ F+ E + LR I Sbjct: 296 DVAARGLDVQDISHIVNYSLPMTAEDYVHRIGRTGRMGKKGKAVTFIMPGEFKRLRYIAS 355 Query: 363 TMKLTIPEVEL 373 + I + EL Sbjct: 356 VAGVDIQKSEL 366 >UniRef50_B8I5B1 DEAD/DEAH box helicase domain protein n=2 Tax=Clostridium RepID=B8I5B1_CLOCE Length = 542 Score = 330 bits (846), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 169/382 (44%), Positives = 237/382 (62%), Gaps = 1/382 (0%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 TF +LG+ APIL+A++D+G++ P+ +Q++ IPH+LN D++ M++TGSGKTA F + Sbjct: 1 MNNTFNELGISAPILKAIDDMGFKTPTEVQSKAIPHILNNEDLIVMSKTGSGKTAVFGVS 60 Query: 64 LLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 +LQ +PE PQ L+L P RELAVQV + +K+++ A+YG +++ + L Sbjct: 61 ILQLTNPEEAGPQGLILTPARELAVQVDNDIRKMAKYLKH-KTTAIYGQHNINLETQILN 119 Query: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183 +G IV GTPGR+ DH+ GTL + LVLDEAD ML MGF++ V I+ +P+ T Sbjct: 120 KGVSIVTGTPGRVFDHISHGTLSTKNIRFLVLDEADRMLDMGFLDQVVRIVKTLPKERIT 179 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAE 243 LFSATMP I I +R+M P + I+S T I Q Y+ V KN L R L E Sbjct: 180 LLFSATMPPEIHNICKRYMNNPVTIEIESQTKTVDTIHQVYYRVNYNEKNTQLNRLLIVE 239 Query: 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 303 ++ +IF TK A V L + GY+S AL+GD+ Q+ R T+++ K G+ IL+ATD Sbjct: 240 KPESCMIFCNTKAAVDRVQSFLGKKGYSSRALHGDIPQSKRLNTIQQFKQGKFHILVATD 299 Query: 304 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 363 VAARG+ +E +SLV+NYD+P D ++YVHRIGRTGRAG GRA V + L IE Sbjct: 300 VAARGIHIEDLSLVINYDVPNDKDNYVHRIGRTGRAGHEGRAFSLVTGDDIISLYEIEEH 359 Query: 364 MKLTIPEVELPNAELLGKRRLE 385 + I E ELP+ E K R E Sbjct: 360 IGTLILEEELPDEEAFTKAREE 381 >UniRef50_Q2BDP3 ATP-dependent RNA helicase n=2 Tax=Bacillus RepID=Q2BDP3_9BACI Length = 543 Score = 329 bits (844), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 163/366 (44%), Positives = 245/366 (66%), Gaps = 2/366 (0%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F LG+ P++ L G ++P+ +Q + IP +L GRD++ AQTG+GKT AF LP+L+ Sbjct: 24 FKHLGISDPLIHKLAAQGIDEPTAVQEKAIPIVLEGRDIIAQAQTGTGKTLAFILPILEK 83 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 +DP + Q L++ PTRELA+Q+ + + M +NV+A+YGGQ + QL L++ Q Sbjct: 84 IDPSNGSTQALIVTPTRELALQITSEVKKLIEDMPDLNVLAVYGGQDVEKQLHKLQRQTQ 143 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 IVV TPGRLLDHL+RGT+ L ++S LVLDEAD+ML +GF+ ++E I++Q P QT LFS Sbjct: 144 IVVATPGRLLDHLRRGTVQLDEVSFLVLDEADQMLHIGFLNEMELIISQTPASRQTMLFS 203 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQ-SYWTVWGMRKNEALVRFLEAEDFD 246 ATMP+ IR+++++ +KEP+ +RI+ + I Q + +T ++N + R E F Sbjct: 204 ATMPDDIRKLSKKHLKEPESIRIEKTFVPEKAIEQLAIFTTDRAKQNALISRIREDRPF- 262 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 AIIF RT ++ +AL+ ++ L+GD+ QA RE+ +++ ++ + LIATDVAA Sbjct: 263 LAIIFCRTIRRATKLYDALKSQRFSCEELHGDLTQAKREKVMKKFRNAEIQFLIATDVAA 322 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RGLDVE ++ V NYDIP DSESYVHRIGRTGRAG+ G A+ F ++ L+ IE+ + + Sbjct: 323 RGLDVEGVTHVYNYDIPQDSESYVHRIGRTGRAGKDGLAVTFYAEKDEAALKAIEQELNI 382 Query: 367 TIPEVE 372 +P+ E Sbjct: 383 RLPKEE 388 >UniRef50_B8FMI0 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FMI0_DESAA Length = 567 Score = 329 bits (844), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 199/579 (34%), Positives = 315/579 (54%), Gaps = 26/579 (4%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNG-RDVLGMAQTGSGKTAAFSLPLLQ 66 F LGL + A+ LG+EKP+PIQ + IP+L+ G RD +G+AQTG+GKT A+ LPL+Q Sbjct: 3 FRILGLSDELARAVESLGFEKPTPIQEKAIPYLIEGERDFVGLAQTGTGKTGAYGLPLIQ 62 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 ++D + PQ +V+ PTREL +Q+A + DF+K+M + V A+YGG Q+R ++ G Sbjct: 63 SIDLSIPRPQAIVICPTRELCLQIAGDLRDFAKYMEDIRVAAVYGGADIVKQIRTVKGGA 122 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 QI+ TPGRLLD + R + ++ +VLDEADEML MGF ED+ I++ +P+ +T LF Sbjct: 123 QIIAATPGRLLDLINRKAIKPGHVTRVVLDEADEMLNMGFQEDINAILSSLPDERRTWLF 182 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SATMP+ + I ++ P EV + PDIS + + + AL R L+ Sbjct: 183 SATMPKGVAAIAAKYQTNPVEVTMGGRNQASPDISHICYMIHAKNRYAALKRILDYCPDM 242 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 ++F RT+ T E+AEAL +GYN+ AL+GD++Q R+Q + R + + +L ATDVAA Sbjct: 243 FGLVFCRTRKDTQEIAEALMADGYNADALHGDLSQPQRDQVMGRFRRKAVQVLAATDVAA 302 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RGLDV+ IS V++Y +P D E+Y HR GRT RAG+ G+++ + RE L+++ER K Sbjct: 303 RGLDVDDISHVIHYVLPDDPEAYTHRSGRTARAGKQGKSIALITPRENYRLKDLERRGKF 362 Query: 367 TIPEVELPNAELLGKRRLEKFAAKVQQ-QLESSDLDQYRALLSKIQPTAEG---EELDLE 422 + LP + ++++ A K+ + +D+ +Y + I EG EE+ + Sbjct: 363 SFQLDSLPQGRDICQKQVAGLAEKLASVSVRENDIAEY---MPDILEAFEGLSREEIIQK 419 Query: 423 TLAAALLKMAQGERTLIVPPDAPMRPKREFR-------DRDDRGPRDRNDRGPRGDREDR 475 ++ ++ R D +P+ + + R+ + R+ +GP+ DR Sbjct: 420 AVSTEFNRLLDYYRN---AGDINAKPREKVKGQAGAKFTREKIVGKGRHGKGPKKDRLKG 476 Query: 476 PRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPK 535 + +R + I GR D V IV + I SR IG I L S E+ K Sbjct: 477 RKTQR--------FFINRGRLDKVNEGAIVRLVCENSGIKSRSIGQIDLNREFSFFEVEK 528 Query: 536 GMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGG 574 + VL+ + K + ++ +P G ++ Sbjct: 529 SLAPRVLRGLENATLDGKALQVRAADKQKPAEKGRKKAA 567 >UniRef50_C6CYC6 DEAD/DEAH box helicase domain protein n=89 Tax=Firmicutes RepID=C6CYC6_PAESJ Length = 578 Score = 329 bits (843), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 163/361 (45%), Positives = 236/361 (65%), Gaps = 1/361 (0%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 T F +G+ + + L G P+P+Q + IP LL+G+DV+ AQTG+GKT AF+LP Sbjct: 1 MSTEFISMGIIPELTDVLQSNGITSPTPVQKKAIPVLLSGQDVIAQAQTGTGKTIAFTLP 60 Query: 64 LLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 +LQ +D + + Q L+L PTRELA+Q+ + + + G V+A YGGQ D Q+R L Sbjct: 61 ILQRIDIDKEQVQALILTPTRELAIQITSELKKLAAAV-GAKVLAAYGGQDVDAQIRKLN 119 Query: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183 P IVV TPGRL+DH++R T++L KL LVLDEAD+ML MGF+ +V+ I+ Q P QT Sbjct: 120 NSPHIVVATPGRLIDHMRRETINLGKLKMLVLDEADQMLHMGFLPEVQNIVDQTPRARQT 179 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAE 243 LFSATMP+ I+R+ +MK P +++IQS+ T +I Q + +AL+ +E + Sbjct: 180 MLFSATMPDQIKRLAENYMKTPVDIKIQSANVTLDNIKQLVIETTDRGRQKALISMIETQ 239 Query: 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 303 A+IF RTK ++ + L+ G+ S L+GD+ QA REQ ++R +D +L IL+ATD Sbjct: 240 RPYLAVIFCRTKVRAKKLNKDLQDLGFESDELHGDLTQAKREQVMKRFRDAKLQILVATD 299 Query: 304 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 363 VAARGLDVE ++ V N+D+P DSE Y+HRIGRTGRAG+ G A+ +R + +IER+ Sbjct: 300 VAARGLDVEGVTHVFNFDVPTDSEIYIHRIGRTGRAGQRGTAITIASPYDRAAVAHIERS 359 Query: 364 M 364 + Sbjct: 360 I 360 >UniRef50_D1Y000 ATP-dependent RNA helicase DeaD family protein n=2 Tax=Prevotella RepID=D1Y000_9BACT Length = 589 Score = 325 bits (832), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 157/376 (41%), Positives = 239/376 (63%), Gaps = 9/376 (2%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F +L L +L+AL D+ +++ +P+Q +CIPH+L G+D+L +AQTG+GKTAA+ LP+L Sbjct: 3 FDELDLNDNVLDALYDMHFDECTPVQEQCIPHILKGKDILAVAQTGTGKTAAYLLPILSK 62 Query: 68 LD----PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQ---RYDVQLR 120 L PE A L+++PTRELA Q+ + M FS ++ GV+ VA+YGG RYD +++ Sbjct: 63 LADGGYPE-DAINCLIMSPTRELAQQIDQGMQGFSYYLNGVSCVAVYGGNDGNRYDQEIK 121 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 +L G +++ TPGR + H+ G +DLSK+S VLDEAD ML MGF ED++TI ++P Sbjct: 122 SLALGADVIIATPGRFISHISLGNVDLSKVSFFVLDEADRMLDMGFSEDIKTIAKKLPST 181 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 QT +FSATMP I + + +KEP+ V++ S I QS + + +K E + Sbjct: 182 CQTIMFSATMPSKIEDLAKTLLKEPEMVKLAVSKPAEK-IQQSAYVCYETQKIEIIKDIF 240 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 +A D IIF +K ++A +L R N ++ D++QA R+ + + K G++D+L+ Sbjct: 241 KAGDLHRVIIFSGSKQKVKQIASSLNRKHINCGEMHSDLDQAQRDDVMFKFKSGQIDVLV 300 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATD+ ARG+D++ I++V+NYD+P D E YVHRIGRT RA R G A+ FV + + I Sbjct: 301 ATDIVARGIDIDDITMVINYDVPHDVEDYVHRIGRTARADRDGVAITFVNGDDIYYFQQI 360 Query: 361 ERTMKLTIPEVELPNA 376 E ++ TI + LP A Sbjct: 361 ESFLEKTIEKNRLPEA 376 >UniRef50_C5SI45 DEAD/DEAH box helicase domain protein n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SI45_9CAUL Length = 605 Score = 324 bits (831), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 162/369 (43%), Positives = 239/369 (64%), Gaps = 6/369 (1%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 TTF DLGL A +L L GY P+PIQA+ IP LLN D+LG+AQTG+GKTAAF+LP+L Sbjct: 2 TTFKDLGLSASLLSTLEKEGYHTPTPIQAQAIPILLNKHDLLGIAQTGTGKTAAFALPIL 61 Query: 66 QNL-----DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 ++ P ++ ++LVL+PTRELA Q+A++ +SK + G+ + ++GG +Y Q + Sbjct: 62 HHILSNRIIPAPRSCRVLVLSPTRELATQIADSFKAYSKGL-GLQIATIFGGVKYGPQYK 120 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 AL+ G I+V TPGRL+DH+++ T+DL + LVLDEAD+ML MGFI+ + + +++P Sbjct: 121 ALQGGIDILVATPGRLIDHIEQKTIDLKAVEHLVLDEADQMLDMGFIKPIRQVASRLPAQ 180 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 Q FSATMP+ I + + P++V I TT ++Q + RK L Sbjct: 181 RQNLFFSATMPKEIAGLANELLTNPKKVEITPEATTAERVTQQVIFIEQQRKRALLSELY 240 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 E +IF RTK VA L+ G +AA++GD NQ+ RE+ L+ K GR+ L+ Sbjct: 241 ADEKLARTLIFTRTKRGADRVAAYLQAGGVEAAAIHGDKNQSQRERALQAFKAGRVRALV 300 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATD+AARG+DV+ ++ V+NY++P +E+YVHRIGRT RAG+ G ++ V + ER+LL++I Sbjct: 301 ATDIAARGIDVDNVTHVINYELPFVAEAYVHRIGRTARAGKEGHSITLVADDERKLLKDI 360 Query: 361 ERTMKLTIP 369 ER + IP Sbjct: 361 ERITRQRIP 369 >UniRef50_B4WCQ8 DEAD/DEAH box helicase domain protein n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WCQ8_9CAUL Length = 510 Score = 324 bits (830), Expect = 7e-87, Method: Compositional matrix adjust. Identities = 166/383 (43%), Positives = 246/383 (64%), Gaps = 6/383 (1%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 TTF +GL +L+AL GY KP+PIQ + IP ++ G+D+LG+AQTG+GKTAAF+LP Sbjct: 14 VSTTFESMGLNKALLQALASEGYTKPTPIQEKAIPDVMQGKDLLGIAQTGTGKTAAFALP 73 Query: 64 LLQNLD-----PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQ 118 +L L P+ + ++LVL+PTRELA Q+ ++ + H+ G V ++GG +Y Q Sbjct: 74 ILHRLAENRIAPKPRTTRVLVLSPTRELATQIGDSFKAYGAHL-GFRVAVIFGGVKYGAQ 132 Query: 119 LRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP 178 RAL+QG I+V PGRLLDH+++ LDLS LVLDEAD+ML +GFI+ + I+++IP Sbjct: 133 ERALQQGLDILVAAPGRLLDHIQQKNLDLSSTEILVLDEADQMLDLGFIKPIRQIVSRIP 192 Query: 179 EGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVR 238 Q FSATMP I ++ +K+P +V++ TT ISQS V RK L Sbjct: 193 AKRQNLFFSATMPTEIGKLAGELLKDPVKVQVTPQSTTVQRISQSVVHVEQGRKRALLTE 252 Query: 239 FLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDI 298 ++ ++F +TK+ +VA LE G + A++G+ +Q RE+TL+ K G+L + Sbjct: 253 MFSDPEYTRCLVFTKTKHGADKVAAYLEAGGVEAGAIHGNKSQPQRERTLDAFKKGKLRV 312 Query: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLR 358 L+ATD+AARG+DV+ +S VVN+++P E+YVHRIGRT RAG G A+ FV E +LL+ Sbjct: 313 LVATDIAARGIDVDGVSHVVNFELPHVPEAYVHRIGRTARAGADGTAISFVAGDEMKLLK 372 Query: 359 NIERTMKLTIPEVELPNAELLGK 381 +IE+ + IP ++ N + LG+ Sbjct: 373 DIEKVTRQKIPAIDRRNDKALGQ 395 >UniRef50_D1B4W7 DEAD/DEAH box helicase domain protein n=2 Tax=Bacteria RepID=D1B4W7_SULD5 Length = 583 Score = 323 bits (829), Expect = 9e-87, Method: Compositional matrix adjust. Identities = 176/436 (40%), Positives = 257/436 (58%), Gaps = 10/436 (2%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 TF GL IL+A+N+ G+ +PSP+QAE IP +L G D++ AQTG+GKTAAF LP + Sbjct: 3 TFESFGLHQDILKAINEAGFTEPSPVQAEAIPLVLQGHDIVAQAQTGTGKTAAFGLPTMS 62 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 +D Q+LV+ PTRELA QV++ + + G+ V +YGG Y Q+ + +G Sbjct: 63 MIDANQNRVQLLVITPTRELATQVSDELYSLGRFC-GIKTVTIYGGSSYSRQIGLIEKGA 121 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 ++V TPGR+LD LK G L +VLDEADEML MGF+ED+E I +P+ QT LF Sbjct: 122 SVIVATPGRMLDLLKNGRLPGFAPKMVVLDEADEMLDMGFLEDIEEIFTYLPKERQTLLF 181 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQ-SSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 SATMPE I+R+ + + EP+ V I TT DI Q Y+ + +++A++R L+A + Sbjct: 182 SATMPEPIKRLASKILHEPKFVSITPKDHTTNEDIEQLYYVINEYERDDAMIRLLDALEP 241 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 + +I+F RTK ++ L GY + L+GDM Q RE ++ + +++IL+ATDVA Sbjct: 242 EKSIVFCRTKKEVDRLSTQLMAVGYAAKGLHGDMEQNQRESVIKAFRSSQIEILVATDVA 301 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARGL+V IS V NY +P D ESYVHRIGRTGRAG+ G A+ V E ++ I + + Sbjct: 302 ARGLNVADISHVFNYHMPFDPESYVHRIGRTGRAGKKGTAITLVTPIEFHSMQRIGKKVG 361 Query: 366 LTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLA 425 I +PN + + +L K A ++ + + + A+L EE+D+ +A Sbjct: 362 SKIEHRIVPNLRDVKENKLIKIADDIKNAELNENASKLLAILE--------EEMDMSQIA 413 Query: 426 AALLKMAQGERTLIVP 441 LL E T + P Sbjct: 414 LKLLSNLLKENTPVGP 429 >UniRef50_O26305 ATP-dependent RNA helicase, eIF-4A family n=1 Tax=Methanothermobacter thermautotrophicus str. Delta H RepID=O26305_METTH Length = 425 Score = 323 bits (828), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 174/429 (40%), Positives = 266/429 (62%), Gaps = 9/429 (2%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F++ + I AL+D+G+E +PIQA +P L+G DV+G AQTG+GKTAAF++P+L+N Sbjct: 6 FSEFDISGDINRALDDMGFESTTPIQALTLPVTLDGMDVVGEAQTGTGKTAAFAIPVLEN 65 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 L+ E + PQ L++ PTREL +QV+E + K+M+ V V+A+YGGQ Q+ LR+G Sbjct: 66 LEAE-RVPQALIICPTRELCLQVSEEIKRIGKYMK-VKVLAVYGGQSIGNQIAQLRRGVH 123 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 ++V TPGRL+DH++RGT+DL +S +VLDEADEML MGFI+D+E I++ +PE QT LFS Sbjct: 124 VIVATPGRLIDHIERGTVDLGGISTVVLDEADEMLNMGFIDDIERILSHVPERRQTMLFS 183 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 AT+ + I RI R++M+ PQ +R++ + P I + Y+ K E L L + + Sbjct: 184 ATVSKPILRIARKYMRNPQVMRVEKKHS--PKIDEFYFKTREEDKVELLDWILSSNNIRM 241 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 +IF TK + L R GY++ ++GD++Q+ RE+ +ER + G +L+ATDVAAR Sbjct: 242 GLIFCNTKRRVQRLRRQLNRMGYSADEIHGDLSQSKRERVMERFRRGDFSLLVATDVAAR 301 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 G+ V + VVNYD+P ++E YVHRIGRTGRAG +G++ V E LR I+ Sbjct: 302 GIHVPDVEAVVNYDLPFENEYYVHRIGRTGRAGSSGKSFTLVVGSEVHRLRRIQSFTGKR 361 Query: 368 IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAA 427 I + +P+ E + + +++ LES S+I + GE ++ A Sbjct: 362 IKQSNMPSPEEIRRGYEMDLREILRRNLESKTYSD-----SEILESLAGEGYSFRDISHA 416 Query: 428 LLKMAQGER 436 LL + + + Sbjct: 417 LLDVLESSK 425 >UniRef50_A6TTG0 DEAD/DEAH box helicase domain protein n=28 Tax=Firmicutes RepID=A6TTG0_ALKMQ Length = 549 Score = 322 bits (825), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 196/481 (40%), Positives = 287/481 (59%), Gaps = 16/481 (3%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 + FA LG+ I LN +P+P+Q + IP LL RDV+ AQTG+GKT AF LP Sbjct: 1 MKNKFAKLGISEEIENVLNKSDITEPTPVQLQAIPPLLAQRDVMAQAQTGTGKTLAFILP 60 Query: 64 LLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 +L+ ++ E Q L++ PTRELA+Q+ A T ++G+N++A YGGQ + QLR L+ Sbjct: 61 ILERVNVEKPTIQALIITPTRELAIQIT-AETKKLAEVKGINILAAYGGQDVEQQLRKLK 119 Query: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183 I++GTPGRLLDHL+R T++L KLS LVLDEAD+ML MGF+ DVE IM IP+ Q Sbjct: 120 GSIHIIIGTPGRLLDHLRRKTINLGKLSMLVLDEADQMLHMGFLRDVEDIMTHIPKRRQN 179 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAE 243 FSATMP +R + ++MK+P ++++QS T +I Q K + L + + Sbjct: 180 MFFSATMPNQVRTLAEQYMKDPVQIQVQSKRVTLDEIRQVVIETTDRGKQDLLCQLFDEY 239 Query: 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 303 + AIIF RTK + + EAL GYNS L+GD+ QA RE+ ++ K ++ L+ATD Sbjct: 240 NPFMAIIFCRTKRRAIALNEALINLGYNSDELHGDLTQAKREKVMKAFKKSKIQYLVATD 299 Query: 304 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 363 VAARGLD+E ++ + NYDIP D ESY+HRIGRTGRAG G A+ F+ +R+R L+ IE+ Sbjct: 300 VAARGLDIEGVTHIFNYDIPQDGESYIHRIGRTGRAGETGMAITFMTSRDRDELKIIEKV 359 Query: 364 MK--LTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAE----GE 417 +K L + + + +L + + K + K + +S D + + K +P + G+ Sbjct: 360 IKMDLDVQKSKSGKIDLDEEEQDTKKSPKGRGNDKSKDFKKGKYGDKKGKPGDKKGRPGD 419 Query: 418 ELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDR--DDRGPRDRNDRGPRGDREDR 475 + D T K G++ P D RP + RDR D++G R +++G GD + R Sbjct: 420 KRDRPTDK----KGRPGDKR-DRPSDNKGRPG-DKRDRPSDNKG-RPGDNKGRPGDNKGR 472 Query: 476 P 476 P Sbjct: 473 P 473 >UniRef50_C7RHZ9 DEAD/DEAH box helicase domain protein n=3 Tax=Anaerococcus RepID=C7RHZ9_ANAPD Length = 536 Score = 321 bits (823), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 157/367 (42%), Positives = 236/367 (64%), Gaps = 1/367 (0%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F +L + IL A++DLGYEKPSPIQ E IPHLL G D++G +QTGSGKTAAF++P+++N Sbjct: 3 FNELNIGNEILRAIDDLGYEKPSPIQEESIPHLLEGNDLIGKSQTGSGKTAAFAIPIIEN 62 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 ++ Q L+L PTREL +QV++ + K+ + + ++++YGG Q+++L++G + Sbjct: 63 IEAN-GITQALILCPTRELCIQVSKEIEKLYKYKKEIKILSVYGGSHIVRQIKSLKKGVE 121 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 IVVGTPGRL+D ++R L L +L +VLDEADEM MGF +D++ I+ + QT FS Sbjct: 122 IVVGTPGRLMDLMRRKVLKLDQLKTVVLDEADEMFDMGFRDDMKFILDRTNPNRQTCFFS 181 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 ATM I+ ++ + P EV+I+S T I Q Y + K EAL+R LE + Sbjct: 182 ATMGPEIQEFSKLYQTNPYEVKIKSKEVTVDRIDQYYIKLKESMKEEALMRLLEIHKANL 241 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 AI+F TK + E+L + Y L+GD+ Q+ R+Q +++ ++ + IL+ATD+AAR Sbjct: 242 AIVFCNTKRKVDRLVESLTKKNYLVDGLHGDLKQSSRDQVMKKFRNKTIQILVATDIAAR 301 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 GLDV+ + +V NYD+P E YVHRIGRT RAG++G + + R+ LR IE K Sbjct: 302 GLDVDDVDIVFNYDLPQLDEYYVHRIGRTARAGKSGLSFSLISGRDNNRLRQIENYTKAN 361 Query: 368 IPEVELP 374 I ++ +P Sbjct: 362 IKQMPVP 368 >UniRef50_A9BJS7 DEAD/DEAH box helicase domain protein n=2 Tax=cellular organisms RepID=A9BJS7_PETMO Length = 530 Score = 321 bits (822), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 177/435 (40%), Positives = 270/435 (62%), Gaps = 12/435 (2%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRD-VLGMAQTGSGKTAAFSLPL 64 T F +GL IL A++ GYE P+PIQ + IP LL+G++ V+G AQTG+GKTAAF +PL Sbjct: 2 TKFQQMGLSDNILSAIDRKGYEAPTPIQEKVIPLLLSGKNNVIGQAQTGTGKTAAFGIPL 61 Query: 65 LQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 ++ LD + Q LVL PTRELA+QV + + R +N++ +YGG Q+RAL++ Sbjct: 62 IERLDEKANDVQALVLTPTRELALQVCNEIDSLKGNKR-LNLLPVYGGVSIGNQIRALKR 120 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 +VVGTPGR++DHL RGTLD++K+ LV+DEADEML MGFIEDVE I+++ + Q Sbjct: 121 RVDLVVGTPGRIIDHLNRGTLDITKIKYLVIDEADEMLDMGFIEDVEMILSKTNKEKQIL 180 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDIS-----QSYWTVWGMRKNEALVRF 239 +FSATMP+ I + R+ M + V + + DI+ Q Y+ + K E L R Sbjct: 181 MFSATMPQRIVTLARKHMGNFETV--TTVQENKEDITVKKAKQIYYMISESNKIELLSRL 238 Query: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299 ++ + ++F +TK + E+A L + GY + ALNGD++Q RE+ ++R K R+ IL Sbjct: 239 IDIDTNFYGLVFTKTKVQSEEIANELIKKGYEAEALNGDVSQNQRERIMDRFKSKRIKIL 298 Query: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359 I+TDVAARG+D++ + V+NY +P + E+Y+HRIGRT RAG G A+ FV E R Sbjct: 299 ISTDVAARGIDIDNLKYVINYSLPQNPENYIHRIGRTARAGNEGTAITFVTPTEYRRFMF 358 Query: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEL 419 I+ + K I E ++P A+ + ++EK +++ L + D+D +L+ + E + Sbjct: 359 IKHSSKAIIEEAKIPQAKDIVNAKVEKIKDEIKSNL-AKDIDPIYEILA--ETILEETDQ 415 Query: 420 DLETLAAALLKMAQG 434 + + A++LK G Sbjct: 416 EPSQIIASILKYFYG 430 >UniRef50_D0JAM0 ATP-dependent RNA helicase n=2 Tax=Blattabacterium RepID=D0JAM0_BLASB Length = 551 Score = 321 bits (822), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 183/548 (33%), Positives = 310/548 (56%), Gaps = 18/548 (3%) Query: 17 ILEALNDLGYEKPSPIQAECIPHLLNG-RDVLGMAQTGSGKTAAFSLPLLQNLDPELKAP 75 IL+AL +G++ P+ IQ + IP LL+ RDV+ +AQTG+GKTAAF LP++Q ++ +L P Sbjct: 15 ILKALEAIGFQYPTTIQEKVIPFLLSSERDVIALAQTGTGKTAAFGLPIIQKVNFDLSIP 74 Query: 76 QILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGR 135 Q +L PTREL VQ+ FSK + + +++LYGG D Q+++L+ I++GTPGR Sbjct: 75 QAFILCPTRELCVQITRDFYRFSKFLSTIKIISLYGGVSIDSQIKSLQNKTHIIIGTPGR 134 Query: 136 LLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIR 195 ++D +KR L L K+ L+LDEADEML MGF E+++ I+ +P+ Q+ LFSATM + + Sbjct: 135 IIDLIKRKKLHLEKIKYLILDEADEMLNMGFKEELDYIVKMLPKNRQSLLFSATMSKYMN 194 Query: 196 RITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM-RKNEALVRFLEAEDFDAAIIFVRT 254 I R ++ +P E+ + Y+ V + +K AL R ++ IIF T Sbjct: 195 AIARTYLTDPVEIIAGQKNIVSDGVKHIYYMVGHLNKKYSALKRIVDINPGIYGIIFCET 254 Query: 255 KNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERI 314 K T E+AE L ++GYN+ AL GD++Q RE + R ++ L L+ATDVAARGLDV I Sbjct: 255 KKETKEIAEYLIKDGYNADALYGDLSQTQRESVMNRFRNKNLQFLVATDVAARGLDVHNI 314 Query: 315 SLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELP 374 + V+NY++P +S+ Y+HR GRTGRAG +G ++ + ++E R L+ E+ + + V +P Sbjct: 315 THVINYNLPKESDIYIHRSGRTGRAGNSGISVCIIHSKETRNLKEFEKRIGKSFERVMVP 374 Query: 375 NAELLGKRRLEKFAAKVQQQLESSDL-DQYRALLSKIQPTAEGEELDLETLAAALLKMAQ 433 N + + +++L F KV++ + L +Q+ + K + EEL + Sbjct: 375 NGKEICEKQLLYFIEKVKKVVVDEKLMNQFLPEIQKNLEFFDKEELIKRFSWIEFNRFIS 434 Query: 434 GERTL--IVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDMQLYRI 491 + I P P+ ++ F +++ ++ + R + +E + + L R Sbjct: 435 SYKNSKDINPIYTPIYTRKTF--MNNKFTKNISSRTKKFRKESFSK--------LFLNR- 483 Query: 492 EVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRIL 551 G D + ++ I + S +IG+I++ ++ S E+ K ++L +R L Sbjct: 484 --GSKDNLTKLGLINLINQAANNSRIHIGHIEILSNSSLFEVEKRYRNKILIGMSRINYL 541 Query: 552 NKPMNMQL 559 +P+++++ Sbjct: 542 GRPLSIEI 549 >UniRef50_C6BZ63 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BZ63_DESAD Length = 521 Score = 320 bits (821), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 207/553 (37%), Positives = 302/553 (54%), Gaps = 44/553 (7%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNG-RDVLGMAQTGSGKTAAFSLPLLQ 66 F +LGL I+EAL G+ P+PIQ + IP LL+G +D++G AQTG+GKTAAF LP+++ Sbjct: 4 FRNLGLSDAIIEALEKKGFTAPTPIQEKTIPMLLSGEKDIVGQAQTGTGKTAAFGLPIIE 63 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 N+ Q +VL PTRELA+QVA+ + F + R V V +YGGQ QL+AL++G Sbjct: 64 NVREGAGHVQAIVLTPTRELAMQVADEIISF-RGSRKVFVATVYGGQPMLPQLKALKRGA 122 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 IVVGTPGR+LDH++R TLDLS+++ VLDEADEM MGF+E+V IM E +T LF Sbjct: 123 DIVVGTPGRVLDHIRRKTLDLSQINNFVLDEADEMCNMGFLEEVSEIMENAGEDRRTLLF 182 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SATMP + I ++FM + V ++ P + V + EAL R ++A+ Sbjct: 183 SATMPREVMNIAKKFMGDYDVVSVKREKDEAPLTELIFHEVNERDRFEALCRVVDAQPEF 242 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 ++F RT+ VA L GY + ++GD++QA RE L R + R IL+ATDVAA Sbjct: 243 YGLVFCRTRADADRVAGTLAERGYPAEPIHGDLSQARREDILMRFRKRRCKILVATDVAA 302 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RG+DV +S VVN+ +P D +S+VHR+GRTGRAG+ G A+ + RE LR I + KL Sbjct: 303 RGIDVPDLSHVVNFALPQDPQSFVHRVGRTGRAGKKGVAVTLITPREFGKLRYITKITKL 362 Query: 367 TIPEVELPNAELLGKRRLEKFAAKVQQQLES----SDLDQYRALLSKIQPTAEGEELDLE 422 + + LP + + + + A++ + +E+ S LD LL + P Sbjct: 363 RVDKKPLPTIDQVIDVKKSRMGAELSEIVEAGKHLSYLDLAHELLEGVDPIEA------- 415 Query: 423 TLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRD 482 AALLK +QG + KR +R ++ G GP +R R R Sbjct: 416 --VAALLKHSQGG----------VLDKRSYRKIEECG-------GPAANR-GRVR----- 450 Query: 483 VGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVL 542 + +GR G+ R +V I I+ I ++K+ ST +P G V+ Sbjct: 451 ------FTAHIGRAHGMTPRKLVDMICRRARINPVRIQHVKIQGRQSTFTVPAGDSDNVM 504 Query: 543 QHFTRTRILNKPM 555 + R +P+ Sbjct: 505 RAVNRASKNERPL 517 >UniRef50_C6XMJ7 DEAD/DEAH box helicase domain protein n=23 Tax=Bacteria RepID=C6XMJ7_HIRBI Length = 769 Score = 320 bits (820), Expect = 9e-86, Method: Compositional matrix adjust. Identities = 164/374 (43%), Positives = 245/374 (65%), Gaps = 6/374 (1%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 T F+D L +P+L+AL+ GYE P+PIQA+ IP ++ G D+LG+AQTG+GKTAAF+LPLL Sbjct: 2 TKFSDFDLASPVLKALDKEGYETPTPIQAQAIPLVMEGGDILGIAQTGTGKTAAFALPLL 61 Query: 66 QNLD--PELKAP---QILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 +L P++ P + LV+APTRELA Q+AEA + + + + + V+ ++GG Q+R Sbjct: 62 HHLCKLPDMPGPGAVRCLVIAPTRELASQIAEAFSKYGQCL-SLRVLKVFGGVPIRKQMR 120 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 L +G ++V TPGRL+D +++G +DLS + LVLDEAD+ML +GFI + I A +P+ Sbjct: 121 DLHRGADVLVATPGRLIDLMEQGAVDLSYVEKLVLDEADQMLDLGFIHPLRRIAAAVPKE 180 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 QT FSATMP + + +F+ P++V I TT ++Q+ V +K L+ L Sbjct: 181 RQTLFFSATMPSNVSGLANQFLTNPKKVSIAQESTTAERVTQTMSHVNQAQKGPLLLVNL 240 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 + E D A++F RTK+ +V L G A++G+ +QA RE+ L ++G +L+ Sbjct: 241 QDESIDRALVFTRTKHGADKVVSKLMNAGIRCGAIHGNKSQAQRERALNAFRNGDSKVLV 300 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATD+AARG+DV +S V NY+IP E YVHRIGRT RAGR G+A+ FV E++ L +I Sbjct: 301 ATDIAARGIDVPGVSHVFNYEIPNVPEQYVHRIGRTARAGREGKAISFVSRDEKKYLLDI 360 Query: 361 ERTMKLTIPEVELP 374 +R +++ IP V+LP Sbjct: 361 QRQIRMKIPIVDLP 374 >UniRef50_B2V9H9 DEAD/DEAH box helicase domain protein n=4 Tax=Hydrogenothermaceae RepID=B2V9H9_SULSY Length = 405 Score = 320 bits (820), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 163/364 (44%), Positives = 238/364 (65%), Gaps = 3/364 (0%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 TF DL L L++L++LGY KP+ IQ + IP ++ G+D++ AQTG+GKTAAF +P+++ Sbjct: 7 TFKDLNLSKETLKSLDELGYSKPTEIQEKAIPAVMTGKDLVAQAQTGTGKTAAFGVPIVE 66 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 ++P+ K Q L+L PTRELA+QVA+ + + K+ + V +A+YGG+ Q+ L++G Sbjct: 67 KVNPKQKKVQALILVPTRELAIQVAKEIKELGKN-KKVYTLAVYGGKSISHQINFLKKGS 125 Query: 127 QIVV-GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 +VV GTPGR+ D L+RG L+L + VLDEAD ML MGFI+D+E IM+ +PE Q L Sbjct: 126 DVVVVGTPGRVRDLLERGVLNLDNVKMFVLDEADRMLEMGFIDDIEEIMSYLPEDRQNLL 185 Query: 186 FSATMPEAIRRITRRFMKEPQE-VRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 FSATMP+ I + F+ E E +R++ T I Q + V K + L L + Sbjct: 186 FSATMPKEILDLAEEFLNENYETIRVKPDEVTVEKIKQIIYRVNPRDKFKKLTEVLSQNE 245 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 + IIF +TK E+AE L G+N++A++GD +Q RE L + G+L IL+ATDV Sbjct: 246 AEKVIIFTQTKIEADELAERLNEEGFNASAIHGDFSQKKRETVLHNFRTGKLKILVATDV 305 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 AARGLD++ + LV+NY +P D+ESY+HRIGRTGRAGR G A+ + E + L+NI++ Sbjct: 306 AARGLDIKGVDLVINYGLPRDAESYIHRIGRTGRAGREGTAISIMTPSEDKQLQNIQKKT 365 Query: 365 KLTI 368 K I Sbjct: 366 KANI 369 >UniRef50_A9A5S3 DEAD/DEAH box helicase domain protein n=5 Tax=Thaumarchaeota RepID=A9A5S3_NITMS Length = 440 Score = 320 bits (819), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 167/366 (45%), Positives = 240/366 (65%), Gaps = 3/366 (0%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 T F +LGLK IL+ LNDLG+E+ PIQ IP LL GRDV+G A TGSGKTAAFSL +L Sbjct: 2 TKFQELGLKEDILKGLNDLGFEEAFPIQEAVIPVLLTGRDVVGQAHTGSGKTAAFSLSML 61 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 Q + P+ Q L++APTRELA+Q+ + + F K+ G+ V +YGGQ +QL AL +G Sbjct: 62 QEIQPK-NGIQGLIMAPTRELAMQITDEIKKFGKYT-GIKVATVYGGQGMGLQLDALERG 119 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 +IVV TPGRL+DHLKRG+++L ++ +VLDEAD ML MGFI+D+ I+ PE +L Sbjct: 120 VEIVVATPGRLIDHLKRGSIELRDVTHIVLDEADTMLDMGFIDDIGFILDLAPEDRVMSL 179 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSATMP I R++ ++ P++ + + + I QSY + K + L+ F++ Sbjct: 180 FSATMPTEILRLSEEYLNNPKQFLLDADDLSGEGIDQSYLVIKDRDKFKYLIDFIKPTK- 238 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 AI+F TK T +VA+ L + +++ A+ GDM+Q REQ++ + + G+ DIL+ATDVA Sbjct: 239 GQAIVFCSTKYRTRDVAKFLHQEKFDAVAIEGDMSQHRREQSMGKFRSGKADILVATDVA 298 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 +RG+DV R+ LV+NYD+P +Y HRIGRT RAG G+A+ FV I+R +K Sbjct: 299 SRGIDVPRVELVINYDVPNQEMAYFHRIGRTARAGAKGKAVTFVSYSSVGDWNLIKRQIK 358 Query: 366 LTIPEV 371 + I ++ Sbjct: 359 VPIKDL 364 >UniRef50_A6DIU5 Probable ATP dependent RNA helicase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DIU5_9BACT Length = 537 Score = 320 bits (819), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 191/523 (36%), Positives = 281/523 (53%), Gaps = 20/523 (3%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLN-GRDVLGMAQTGSGKTAAFSLPLLQ 66 F LGL+ I + L G+++PSPIQ + IP LL+ D++G AQTG+GKTAAF LP++Q Sbjct: 4 FTALGLEPWITQCLEAKGFKEPSPIQEQAIPVLLSQDHDIIGQAQTGTGKTAAFGLPIVQ 63 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 ++P LK PQ L+L PTRELA+QV E + F K RG+ V LYGG Q RAL++G Sbjct: 64 KIEPGLKKPQALILCPTRELAIQVNEEIKSFCKG-RGITTVTLYGGAPIMDQKRALKKGV 122 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 +VV TPGR + ++ G L+L L LVLDEADEML MGF+EDVE ++ P+ +F Sbjct: 123 DLVVATPGRCIHFIEDGKLELDSLEYLVLDEADEMLNMGFVEDVEKVLKASPDDRTVLMF 182 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SATMP +++I +M ++ +S T I Q + + K AL R ++ E Sbjct: 183 SATMPPRLKKIAESYMHNSITIKAKSETMTMETIDQVVYEAYPENKFAALCRIMDLEKDF 242 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 IIF RTK +V+ L GY + ++GD+ Q RE+ L+R ++ + +LIATDVAA Sbjct: 243 YGIIFCRTKVEVEKVSAGLANEGYAADYIHGDVAQESRERLLKRFRNRNISLLIATDVAA 302 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RG+DV +S +VN+ +P ESYVHRIGRTGRAG+ G A+ + +ER + IE+ Sbjct: 303 RGIDVTDLSHIVNFSLPEQFESYVHRIGRTGRAGKTGTAITLITPKERSKMSFIEKKTGA 362 Query: 367 TIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAA 426 +LP E + K R++K + E + + A L ++ P E LE + Sbjct: 363 KTERRKLPFGEEMIKLRIQKLSK------ELAHFQENNAELEELAPIKEVAAQLLEDNSP 416 Query: 427 ALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDM 486 + A + DA P + RN +G GD Sbjct: 417 VDIITALLSKIFGTKLDASNYPDINCSAAKKKSRDSRNFKGNTAS------------GDS 464 Query: 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHS 529 + G+ DG+ + ++ I+ + ++ R I N+K+F S Sbjct: 465 KSLFFAKGKRDGMMPKKVISFISGKSKVAPRGIDNLKVFDKFS 507 >UniRef50_Q46G62 ATP-dependent RNA helicase n=7 Tax=cellular organisms RepID=Q46G62_METBF Length = 579 Score = 318 bits (815), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 209/625 (33%), Positives = 329/625 (52%), Gaps = 58/625 (9%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGR-DVLGMAQTGSGKTAAFSLPLLQ 66 F LGL +L+AL G+E+P+PIQ + IP L G D++G AQTG+GKT AF P+++ Sbjct: 7 FKALGLSDSMLKALKKKGFEEPTPIQEKVIPLFLKGECDIIGQAQTGTGKTTAFGAPIIE 66 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 + + Q +VL PTRELA+QV+E + K + +++V +YGGQ Q R L+ G Sbjct: 67 KIPEKSGKVQAIVLTPTRELAIQVSEELNSL-KGDKKLHIVPIYGGQSMTQQFRMLKSGV 125 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 IVVGTPGR++DHL+R +L+L ++ VLDEADEML MGFI+D++ I+ + F Sbjct: 126 DIVVGTPGRVIDHLERKSLNLENIAYFVLDEADEMLNMGFIDDIKEILKATGPDKRMLFF 185 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SATMP+ I I ++ MK + V I+ Q Y+ V K EAL R ++ ED Sbjct: 186 SATMPKPILGIIKKHMKNYEYVAIKKEDLDVNLTEQIYFEVKESDKFEALCRIIDIEDEF 245 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 ++F RTK T ++A+ L GY + AL+GD++Q RE+ L R + +++IL+ATDVAA Sbjct: 246 YGLVFCRTKTDTSQLAQKLGDRGYAADALHGDLSQREREKILNRFRKQKINILVATDVAA 305 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RG+D+ ++ V+NY +P D ESYVHRIGRTGRAG+ G A+ FV + E R L I++T K Sbjct: 306 RGIDIMDLTHVINYSLPQDPESYVHRIGRTGRAGKQGTAITFVTSTEYRRLTYIKKTSKS 365 Query: 367 TIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAA 426 + +P + + K + + A++++ +++ + + K EE E + A Sbjct: 366 AMKRGRIPEIKDVIKAKRARVKAELEETIKNEEYGDCLEMSEKFL-----EEYPAEKILA 420 Query: 427 ALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDM 486 ALLK + F++ D DR+ G Sbjct: 421 ALLKYS-------------------FKEMFDESMYTEISGSSYVDRK----------GKT 451 Query: 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFT 546 +L+ I +G+ DG+ + I E +S I + ++F S + +P +L+ F Sbjct: 452 RLF-IAMGKADGMTPEKLCEFIQEETGVSDLKIRDAEIFPHFSFVTVPFAQASALLEIFK 510 Query: 547 RTRILNKPMNMQLLGDAQ---PHTGGERRGGGRGFGGERREGGRNFSGERREGGRGDGRR 603 + KP ++L ++ + E RGG R G R++S R D Sbjct: 511 DKKRGRKPF-IELAQKSKRRSSKSADEYRGGTRN-------GSRSYS-------RNDS-- 553 Query: 604 FSGERR-EGRAPRRDDSTGRRRFGG 627 ++G R ++ RD T ++++ Sbjct: 554 WNGSRNTNSKSYTRDTRTAKKKYSS 578 >UniRef50_D1N203 DEAD/DEAH box helicase domain protein n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N203_9BACT Length = 627 Score = 318 bits (814), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 171/398 (42%), Positives = 246/398 (61%), Gaps = 2/398 (0%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGR-DVLGMAQTGSGKTAAFSLPLL 65 F LG+ +LEAL G+E PSPIQA IP LL G D++G AQTG+GKTAAF +P++ Sbjct: 6 NFRKLGVSEEVLEALRAKGFEAPSPIQALTIPKLLEGAVDLIGQAQTGTGKTAAFGIPVI 65 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 + + K PQ L+L+PTREL++Q+AE + K R + + YGGQ ++QL+ LR G Sbjct: 66 ELCEGGGKKPQALILSPTRELSIQIAEELNSL-KGKRKLRIAPFYGGQMIEIQLQRLRDG 124 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 +V+GTPGR++D ++RG LD S+L VLDEADEML MGF+ED+E I+ + + Sbjct: 125 IDVVIGTPGRIMDLMERGKLDFSELKFAVLDEADEMLDMGFVEDIEKILGATNSDKRMLM 184 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSATMP I +I RFM+ + VR +S+ Q Y+ V K EAL R ++ E Sbjct: 185 FSATMPPEILKIAERFMRSYETVRAESAQLNTELTEQIYFEVRREDKFEALSRIIDVEQD 244 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 A++F RT+N E+ E L+ G+ AL+GD+ Q R + + + KD + ILIATDVA Sbjct: 245 LYALVFCRTRNDVDELVEKLKLRGHRVEALHGDIAQMQRTRVINQFKDKKFKILIATDVA 304 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARG+DV ++ V+NY +P +E+YVHRIGRTGRAG+ G A+ FV E R L I+R Sbjct: 305 ARGIDVNDLTHVINYSMPQGTETYVHRIGRTGRAGKNGTAITFVTPAEYRKLTMIQREAH 364 Query: 366 LTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQY 403 I ELP + + + + F+ ++ + + + +Y Sbjct: 365 TEIRREELPQGRDIVEMKKQHFSEQLSEAISAGQHQEY 402 >UniRef50_P42305 ATP-dependent RNA helicase dbpA n=99 Tax=Firmicutes RepID=DBPA_BACSU Length = 479 Score = 317 bits (812), Expect = 8e-85, Method: Compositional matrix adjust. Identities = 167/390 (42%), Positives = 244/390 (62%), Gaps = 2/390 (0%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F + + IL AL LGY +P+ +Q IP L +D++ +QTGSGKTA+F +PL + Sbjct: 4 FKNYQISHDILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPLCEL 63 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 + + PQ L+L PTRELAVQV E +T+ + R + A++G +D Q L+Q Sbjct: 64 ANWDENKPQALILTPTRELAVQVKEDITNIGRFKR-IKATAVFGKSSFDKQKAELKQKSH 122 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 IVVGTPGR+LDH+++GTL L +LS LV+DEADEML MGFIE VE I+ +P T LFS Sbjct: 123 IVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPTERTTMLFS 182 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 AT+P+ I +++R++M+ P+ + ++++ T +I + V K L L E+ D+ Sbjct: 183 ATLPQDIEKLSRQYMQNPEHIEVKAAGLTTRNIEHAVIQVREENKFSLLKDVLMTENPDS 242 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 IIF RTK ++ + L+ GY ++G M Q R + K G L+ATDVAAR Sbjct: 243 CIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAAR 302 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 G+D+E ISLV+NYD+P++ ESYVHR GRTGRAG G+A+ FV E+R L +IE + Sbjct: 303 GIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFE 362 Query: 368 IPEVELPNAELLGKRRLEKFAAKVQQQLES 397 I ++E P+ E + +++ E F AK+ + ES Sbjct: 363 IQKIEAPSQEEVARKKPE-FLAKLNDRPES 391 >UniRef50_C7NBE3 DEAD/DEAH box helicase domain protein n=3 Tax=Leptotrichia RepID=C7NBE3_LEPBD Length = 571 Score = 317 bits (812), Expect = 8e-85, Method: Compositional matrix adjust. Identities = 171/404 (42%), Positives = 251/404 (62%), Gaps = 3/404 (0%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGR-DVLGMAQTGSGKTAAFSLPLLQ 66 F D GL +L AL+ G+E+PS IQ +P LL R ++G AQTG+GKTAAF +P+L+ Sbjct: 4 FEDFGLSTEMLNALSKKGFEEPSEIQKLVVPELLKERTHLIGQAQTGTGKTAAFGIPILE 63 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 +D + K + L+LAPTRELA QV++ + K + + V+A+YGG + Q++ L+ G Sbjct: 64 TIDAD-KTVRALILAPTRELANQVSDEIYSL-KGEKDIKVLAVYGGASIENQIKRLKAGV 121 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 IVVGTPGR++D + + L ++ L VLDEADEML MGF+ED+E I+ + + + F Sbjct: 122 DIVVGTPGRVMDLINKKVLKVNGLDYFVLDEADEMLNMGFLEDIEEILEKTNDEKKMLFF 181 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SAT+P+AI I +RFM E + ++++ T Q Y+ V K EAL R L+ E Sbjct: 182 SATIPKAILAIAKRFMPEHKLLKVEKKELTTNLTEQIYYEVKQEDKFEALCRVLDYEQNF 241 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 I+F RTK+ +V L+ Y++ ++GD+ QALR++ L+ K L IL+ATDVAA Sbjct: 242 YGIVFCRTKSEVDDVTNKLKARNYDAECIHGDITQALRQKALDLFKKQILTILVATDVAA 301 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RG+DV ++ V+NY IP ++ESYVHRIGRTGRAG G A+ FV RE L I+R K Sbjct: 302 RGIDVSNLTHVINYSIPQEAESYVHRIGRTGRAGHKGIAITFVTPREASKLAQIKRVTKT 361 Query: 367 TIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKI 410 I ++PN E + + + E A V + ++ SD + Y L ++ Sbjct: 362 DIKREDIPNVEEILEAKKEALVAYVDEIIKESDFNAYEELAQRL 405 >UniRef50_D2QWU0 DEAD/DEAH box helicase domain protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2QWU0_9PLAN Length = 598 Score = 317 bits (812), Expect = 8e-85, Method: Compositional matrix adjust. Identities = 164/377 (43%), Positives = 249/377 (66%), Gaps = 9/377 (2%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +F DLGL P++ ALN Y +P+ IQ + IP + GRD+ G AQTG+GKTAAF+LPLL Sbjct: 2 SFEDLGLAEPLVRALNAANYTEPTAIQLQAIPPAIAGRDLQGCAQTGTGKTAAFALPLLD 61 Query: 67 NL--DPEL-----KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119 L +P + P+ LVL+PTRELA Q+ +++ + +H N + +YGG Q+ Sbjct: 62 RLIKNPRQGKLRGRLPRALVLSPTRELAGQIHDSVRRYGRHAM-QNSLTIYGGVSQVPQV 120 Query: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179 + L G +++ TPGRL D +++G ++LS++ VLDEAD ML MGF+ D+ I+A++P+ Sbjct: 121 KGLNAGQDVLIATPGRLCDLMQQGYINLSEIEVFVLDEADRMLDMGFMPDIRRIIAKLPQ 180 Query: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239 QT LFSATMP I+++ + + +P E+ I+ T I+QS + V K E L Sbjct: 181 QKQTLLFSATMPPEIQKLASQLLHDPVEINIEPERATADGITQSLYYVPTKHKPELLASV 240 Query: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299 L+ E+ A++FVRTK+ + A LE+ G A++G+ +Q+ R++TL K+G + +L Sbjct: 241 LKREEVTRAVVFVRTKHGCNKAALQLEKTGLKVDAIHGNKSQSARQRTLYAFKNGHIQVL 300 Query: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359 +ATDVAARGLDV +S V+NYD+PM+ E+YVHRIGRTGRAG++G A+ F ++ +R LLR+ Sbjct: 301 VATDVAARGLDVTGVSHVINYDLPMEPETYVHRIGRTGRAGKSGIAISFCDDEQRGLLRD 360 Query: 360 IERTMKLTIP-EVELPN 375 ++R + IP E E+P+ Sbjct: 361 VQRILGKKIPVENEMPD 377 >UniRef50_Q2LY23 Superfamily II DNA and RNA helicases n=2 Tax=Bacteria RepID=Q2LY23_SYNAS Length = 572 Score = 316 bits (809), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 189/539 (35%), Positives = 303/539 (56%), Gaps = 18/539 (3%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGR-DVLGMAQTGSGKTAAFSLPLL 65 TFA+ + I++ L+ LG+ +P+Q + IP +LN + D++G+AQTG+GKTAAF +PL+ Sbjct: 3 TFAEFEINTDIMKGLDGLGFSVMTPVQEKIIPIVLNRQTDLVGLAQTGTGKTAAFGIPLI 62 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 Q D LK Q LVL PTREL VQVA + ++++ + +V +YGG Q LR+G Sbjct: 63 QLTDTRLKRTQALVLCPTRELCVQVAGDLNLMGRYVQKLKIVPVYGGASIVSQTEELRKG 122 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 Q+VV TPGRL D ++RG +DLS +S +VLDEADEML+MGF +++ I+A P+ T L Sbjct: 123 AQVVVATPGRLHDLIRRGAVDLSGVSWVVLDEADEMLQMGFQDELNAILAVTPDSKNTLL 182 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSATMP + I +MK+P E+ + ++ Y+ V + +AL R + Sbjct: 183 FSATMPREVAAIAANYMKDPLEIIVGRRNAGAENVDHIYYVVSARHRYQALRRIADMNPE 242 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 AIIF RT+ T E+ + L +GY++ AL+GD++Q+ R+ + + + + +L+ATDVA Sbjct: 243 LYAIIFCRTRLETREIVDKLIEDGYSADALHGDLSQSQRDHVMHKFRSRNIRMLVATDVA 302 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARGLDV ++ V+NY +P +S Y HR GRTGRAG+ G ++ +E RE+ +R IER +K Sbjct: 303 ARGLDVNDLTHVINYSLPEESSGYTHRSGRTGRAGKKGISIALIETREKHKIRAIERCLK 362 Query: 366 LTIPEVELPNAELLGKRRLEKFAAKVQQ-QLESSDLDQYRALLSKIQPTAEGEELDLETL 424 E +P+ + KRRL V++ ++++ +D + +SK E LD E L Sbjct: 363 KNFEEGRIPSGHEICKRRLLSHMEAVKKTEIDAEHIDPFLPAISKTL-----ESLDREEL 417 Query: 425 AAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVG 484 + M + R L +AP + + P+ + G +P R Sbjct: 418 IKRFVSM-EFNRFLASYRNAP-----DLNTFEKTPPKKKTREAAAG----KPYRLASRKK 467 Query: 485 DMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQ 543 L+ I G+ DG+ + ++ +++ + IG I++ + S +E ++LQ Sbjct: 468 FTPLF-INAGKKDGISPKRLMRDLSDAAGMPDVRIGRIEVNNTTSLLEADSRFAPKILQ 525 >UniRef50_Q6MN50 ATP-dependent RNA helicase n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MN50_BDEBA Length = 656 Score = 313 bits (802), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 165/393 (41%), Positives = 247/393 (62%), Gaps = 10/393 (2%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNG-RDVLGMAQTGSGKTAAFSLPLLQ 66 F GL AP++ A+ D+G+ P+PIQ + +P LL G D +G+A TG+GKTAAF +PL++ Sbjct: 46 FESFGLSAPVMAAMADMGFTTPTPIQRQALPILLAGANDFIGLASTGTGKTAAFGIPLIE 105 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 N+D +K Q LVL+PTRELA+QVAE +T K +GV VV +YGG Y Q+ +++G Sbjct: 106 NIDSTVKDTQALVLSPTRELALQVAEQLTLLGKK-KGVRVVTIYGGASYRTQIDGIKRGA 164 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMA--------QIP 178 IVV TPGRL+D L++ + L + +VLDEADEML MGF E +ETI++ + Sbjct: 165 HIVVATPGRLVDFLEQKMIKLQSVKTVVLDEADEMLSMGFKEALETILSATQPDDSDSVR 224 Query: 179 EGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVR 238 +T LFSATM +RR+T +++ P+ V + T I Q Y+TV K E + R Sbjct: 225 AACRTWLFSATMSSEVRRLTSTYLENPETVSVNKVGGTADTIEQVYYTVKNSYKTEVIGR 284 Query: 239 FLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDI 298 L+ IIF +TK E+A+ L + G+ + +L+GD +Q RE TL++ K ++ + Sbjct: 285 LLQTLPEFYGIIFCQTKMEVAELADVLTQRGFPADSLHGDKSQQEREATLKKFKQRQVKV 344 Query: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLR 358 ++ATDVAARGLD++ ++ VVN+ +P DSESYVHRIGRTGR G+ G A+ V + LLR Sbjct: 345 IVATDVAARGLDIKDLTHVVNHSLPWDSESYVHRIGRTGRNGQKGTAITLVNPEQLTLLR 404 Query: 359 NIERTMKLTIPEVELPNAELLGKRRLEKFAAKV 391 + + K + + +P+A+ + +++ KV Sbjct: 405 RVMQNTKAVLTKGVIPSADEVAGLKIKDVMDKV 437 >UniRef50_C4ZJL9 DEAD/DEAH box helicase domain protein n=1 Tax=Thauera sp. MZ1T RepID=C4ZJL9_THASP Length = 545 Score = 312 bits (800), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 165/376 (43%), Positives = 239/376 (63%), Gaps = 9/376 (2%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +FADLGL +L+A+ D GY +P+PIQ + IP ++ G+DV+G AQTG+GKTA F+LPLL Sbjct: 2 SFADLGLIPELLQAVTDAGYTEPTPIQRQAIPIVIAGKDVMGGAQTGTGKTAGFTLPLLH 61 Query: 67 NL--------DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQ 118 + P + L+LAPTRELA+QV E++ +SKH+ + V +YGG Q Sbjct: 62 RIARHANTSTSPARHQTRALILAPTRELAMQVFESVKTYSKHL-PLRSVCVYGGVDIRPQ 120 Query: 119 LRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP 178 LR+G +IV+ TPGRLLDHL++ +++LS++ LVLDEAD ML MGFI D++ I+A +P Sbjct: 121 QAELRRGIEIVIATPGRLLDHLEQKSINLSQVEVLVLDEADRMLDMGFIPDIKRILALLP 180 Query: 179 EGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVR 238 + Q+ LFSAT + I+R+ + +KEPQ + + I+ V K L Sbjct: 181 KQRQSLLFSATFSDEIKRLADQMLKEPQLIEVARRNMVSETITHVVHPVSSGMKRNLLAH 240 Query: 239 FLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDI 298 L + A++FV TK +A LER+G ++ A++GD Q R TLE K G+L + Sbjct: 241 LLRHKPDTQALVFVDTKLMCGRLAHYLERSGISADAIHGDKGQQQRTDTLEAFKSGKLRV 300 Query: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLR 358 L+ATDVAARGLD++ + V+N+++P +E YVHRIGRTGRAG G A+ V + E+ L Sbjct: 301 LVATDVAARGLDIDELPFVINFELPHTAEDYVHRIGRTGRAGHHGYAISLVSSEEKHWLS 360 Query: 359 NIERTMKLTIPEVELP 374 IE+ +KL IP+ +P Sbjct: 361 EIEKLIKLQIPQERVP 376 >UniRef50_Q1J0S9 DEAD/DEAH box helicase-like protein n=2 Tax=Deinococcus RepID=Q1J0S9_DEIGD Length = 591 Score = 311 bits (796), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 190/436 (43%), Positives = 259/436 (59%), Gaps = 31/436 (7%) Query: 13 LKAPILEA-LNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLD-P 70 L AP L A L + G + SPIQAE +PH L G+D++G A+TG+GKT AF+LP++QNL P Sbjct: 6 LIAPELAARLAERGITEASPIQAESLPHTLAGKDLIGRARTGTGKTLAFALPIIQNLTAP 65 Query: 71 ELKA-------PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 + + P+ +V+APTRELA QVAE +FSK ++ V +YGG Y Q ALR Sbjct: 66 DGRGSRERGRLPRAIVIAPTRELAKQVAE---EFSKSGPQLSTVTVYGGAAYGPQENALR 122 Query: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183 +G +VVGTPGRL+DHL+RG LDLS + VLDEADEML +GF + +ETI+ Q P QT Sbjct: 123 RGVDVVVGTPGRLIDHLERGNLDLSAIQYAVLDEADEMLSVGFADAIETILQQTPAARQT 182 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTV-WGMRKNEALVRFLEA 242 LFSAT+ + I R+ R++++EP V + ++ S + V G + L L Sbjct: 183 MLFSATLNDEIHRLARKYLREPVVVDLVGEGKSQAAQSVEHLKVKVGRTRTRVLADLLTV 242 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 + + AI+F RTK E+A L G S AL+GD+ Q+ RE+ L + GR+ +L+AT Sbjct: 243 YNPEKAIVFTRTKREADELANELIHRGIESEALHGDLAQSQRERALGAFRSGRVGVLVAT 302 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 DVAARGLD+ + LVV Y +P D ESYVHR GRTGRAGR G A++ +RE R LRN+E Sbjct: 303 DVAARGLDIPEVDLVVQYHLPQDPESYVHRSGRTGRAGRTGTAIVMYGDRENRELRNLEY 362 Query: 363 TMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGE----- 417 + E LP + +VQ + D R + S + T + E Sbjct: 363 RTGVQFKERPLPTPK------------EVQAASARASADLVRKVDSGVAATFQAEAERLF 410 Query: 418 -ELDLETLAAALLKMA 432 EL LE LA AL K++ Sbjct: 411 SELGLEALARALAKIS 426 >UniRef50_Q126W4 DEAD/DEAH box helicase-like n=153 Tax=Bacteria RepID=Q126W4_POLSJ Length = 579 Score = 310 bits (794), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 168/390 (43%), Positives = 243/390 (62%), Gaps = 9/390 (2%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 TF +L L IL+A+ + GY+ P+PIQA+ IP +L G D+LG AQTG+GKTAAF+LP+LQ Sbjct: 2 TFEELKLAPAILKAVLEQGYDTPTPIQAQAIPAVLAGSDLLGGAQTGTGKTAAFTLPMLQ 61 Query: 67 NLDPE--------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQ 118 L E + A + L++ PTRELA QV E++ + K++ ++V ++GG Q Sbjct: 62 RLSTEPRLTNRRGVNAVRALIMTPTRELAAQVEESVRTYGKYLDLTSMV-MFGGVGMGAQ 120 Query: 119 LRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP 178 + LR+G I+V TPGRLLDH +GTLDLS++ LVLDEAD ML MGFI D++ ++A +P Sbjct: 121 IDKLRRGVDILVATPGRLLDHAGQGTLDLSQVQILVLDEADRMLDMGFIHDIKKVLALVP 180 Query: 179 EGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVR 238 + Q+ LFSAT + IR + +++P +++ TT I+Q+ V +K L Sbjct: 181 KHKQSLLFSATFSDEIRELANGLLRDPLHIQVTPRNTTVQRITQTIHPVGRSKKKALLTH 240 Query: 239 FLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDI 298 + ++ ++F RTK VAE L +NG + AL+G+ +Q R Q L+ KDG + Sbjct: 241 IINEHNWSQVLVFTRTKFGANNVAEHLTKNGIEAMALHGNKSQTARTQALQGFKDGTIRA 300 Query: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLR 358 L+ATD+AARG+D++ + VVNY+IP SE YVHRIGRTGRAG +G A+ V E ++ Sbjct: 301 LVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGNSGEAVSLVCLDEEGFMQ 360 Query: 359 NIERTMKLTIPEVELPNAELLGKRRLEKFA 388 +IER K I +V +P E R E A Sbjct: 361 DIERFTKQNIEKVLVPGFEAEPGERAEPLA 390 >UniRef50_C8PQM8 DEAD/DEAH box helicase n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PQM8_9SPIO Length = 646 Score = 310 bits (793), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 215/620 (34%), Positives = 327/620 (52%), Gaps = 52/620 (8%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNG-RDVLGMAQTGSGKTAAFSL 62 + +F DLGL +L A+ G+E+P+PIQ IP LLNG +V+ A+TG+GKTAA+ L Sbjct: 16 MDISFRDLGLDESVLNAVAAKGFEEPTPIQVLAIPRLLNGDANVIAKARTGTGKTAAYGL 75 Query: 63 PLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSK--HMRGVNVVALYGGQRYDVQLR 120 PL+Q L + P+ LVL PTRELA+QVA + F + H R + +YGG QLR Sbjct: 76 PLVQELREPREKPRALVLVPTRELALQVASEIESFKEGTHPR---ITTVYGGASIVEQLR 132 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 L++G +IV GTPGR++DHL+RG+L+L + +LDEADEML MGFIED+ETI + Sbjct: 133 NLKRGCEIVAGTPGRVIDHLERGSLNLDSIEYFILDEADEMLNMGFIEDIETIFKKANPD 192 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 + +FSATMP+ I +I FM E + V ++S P Q +W V K+EALVR + Sbjct: 193 SRVLMFSATMPKQILKIAADFMGEYEIVEEEASEEPLPLTEQFFWMVREEDKSEALVRLI 252 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 + + ++F +TK VA+ L+ Y +AAL+GD+ Q RE+ L R + G+ IL+ Sbjct: 253 DTAENFYGLVFCQTKVDADAVAKELDERHYEAAALHGDIPQGQREKILSRFRAGKTRILV 312 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATDVAARG+D+E I+ VVNY IP D +Y HRIGRTGRAG G A+ F+ ERR + + Sbjct: 313 ATDVAARGIDIEGITHVVNYSIPYDGPTYTHRIGRTGRAGAKGTAVSFIRPNERRRIDYL 372 Query: 361 ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLES---------SDLDQYRALLSKIQ 411 R + + E ++P+ E + ++ ++ + +++QL++ S ++ R LL+ + Sbjct: 373 RRHARGELLEGKIPSIEKVLAQKQDRLFSDLRRQLDTVQAEHTVNKSFIELARELLAGNK 432 Query: 412 PT-AEGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRD-------------D 457 + A EE + A+ A + + +A + + + Sbjct: 433 ASLAATEETAADGTDTAVANTANVDEAVAFGAEAAVSGVKHIDSAELLAAVLQLHYGSVL 492 Query: 458 RGPRDRNDRGPRG-DREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISS 516 RN + PR ++ +P E ++LY + +GR DG R + + I Sbjct: 493 SASHYRNIKIPRSEEKRGKPSGE----NTVRLY-VGLGRKDGTSKRSLAQFFSTLLSIPE 547 Query: 517 RYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLL-----------GDAQP 565 + I+LF S +LP E L R+ K NM + +AQP Sbjct: 548 HAVDRIELFDRFSLADLPADAAHEAL------RLSKKRANMPHIHIDTKSDNVTDKNAQP 601 Query: 566 HTGGERRGGGRGFGGERREG 585 ++ + G RRE Sbjct: 602 AGSAKKSSSRKLREGNRREA 621 >UniRef50_C1I2P2 ATP-dependent RNA helicase DeaD n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I2P2_9CLOT Length = 481 Score = 310 bits (793), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 152/379 (40%), Positives = 244/379 (64%), Gaps = 3/379 (0%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F ++ L IL+AL +LG+EKPS +Q E IP++L+ +D++ +QTGSGKTA+F +PL + Sbjct: 6 FENMNLSEEILKALKNLGFEKPSEVQQEVIPYILDKKDLVVKSQTGSGKTASFGIPLCEL 65 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 ++ E + L+L PTRELA+QV E +++ + ++ V A++G Q ++ Q+R L+Q Sbjct: 66 VNVEENKVKALILVPTRELAIQVKEDISNIGR-LKKVRCAAIFGKQPFNEQIRELKQRVH 124 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 IV GTPGR++DH++RG LD++ + +++DEAD+ML MGFI+ + ++ ++P+ TALFS Sbjct: 125 IVCGTPGRVIDHIERGNLDINDIDFVIIDEADKMLNMGFIDQITDVLDKLPQSKNTALFS 184 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 AT+P+ I + +M P + I+S V R IS+ Y+ V K + L++ L A ++ Sbjct: 185 ATIPKEIEGLYSNYMNNPTVLNIRSKVFNRDKISEKYFNVDREEKFKYLLKSLYAFTDES 244 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 AIIF TK++ ++ L++ + L+GDM+Q R T+E K+ +L+ATDVAAR Sbjct: 245 AIIFCNTKDSVRNLSSLLKKEKISVKELHGDMDQKDRLATMENFKNKEFKVLVATDVAAR 304 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 G+ + I+ V NY++P++ ESYVHRIGR+GR + G A+ V ERR L IE + + Sbjct: 305 GIHINHITNVFNYEVPIEKESYVHRIGRSGRGDKKGLAISLVSKGERRFLNEIEEYINYS 364 Query: 368 IPEVELPNAE--LLGKRRL 384 I E L E + G++R Sbjct: 365 IEEANLLEYEEIIEGRKRF 383 >UniRef50_Q17W71 ATP-dependent RNA helicase n=19 Tax=Helicobacter RepID=Q17W71_HELAH Length = 494 Score = 309 bits (791), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 152/368 (41%), Positives = 233/368 (63%), Gaps = 2/368 (0%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +F DLGLK +L+++ + G+ PSPIQ + IP +L GRDV+ AQTG+GKTAAF+LP++ Sbjct: 23 SFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIIN 82 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 NL + LV+ PTRELA+Q+++ + KH + V +YGGQ Q +++ P Sbjct: 83 NLKNN-HTIEALVITPTRELAMQISDEIFKLGKHTK-TKTVCVYGGQSVKKQCEFIKKNP 140 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 Q+++ TPGRLLDHLK + +VLDE+DEML MGF++D+E I +P Q LF Sbjct: 141 QVMIATPGRLLDHLKNDRIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLF 200 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SATMPE I+++ + ++ P ++ I S T DI+Q ++ + ++EA++ L+ + + Sbjct: 201 SATMPEPIKKLADKILENPIKIHIAPSNITNTDITQRFYVINEHERSEAIMHLLDTQAPE 260 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 +I+F RTK E+ + L Y S AL+GDM+Q R ++ K D+L+ATDVA+ Sbjct: 261 KSIVFTRTKKEADELHQFLISKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVAS 320 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RGLD+ +S V NY +P+++ESY+HRIGRTGRAG+ G A+ V E + L +++ + Sbjct: 321 RGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDS 380 Query: 367 TIPEVELP 374 I E+P Sbjct: 381 EIELFEIP 388 >UniRef50_A3EUK2 Putative ATP-dependent helicase n=2 Tax=Leptospirillum sp. Group II RepID=A3EUK2_9BACT Length = 444 Score = 309 bits (791), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 173/386 (44%), Positives = 243/386 (62%), Gaps = 9/386 (2%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 TF LGL IL ALNDLG+ P+PIQ + IPH+++GRD+LG+AQTG+GKT F LP+L Sbjct: 2 TFEALGLSPEILRALNDLGHASPTPIQKQSIPHVIDGRDLLGIAQTGTGKTGGFLLPVLH 61 Query: 67 NLDPELKA---PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 + + + LVL+PTRELA Q+ +A D++K++ N V L GG + Q R L+ Sbjct: 62 KIAEGRRHGIRNRALVLSPTRELATQIHQAAKDYAKYLH-TNAVLLVGGVDFIRQERNLK 120 Query: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183 + IVV TPGRLLDH++R L L+ S +++DEAD ML MGF+ D+ TI+ Q+P+G Q+ Sbjct: 121 RNWDIVVATPGRLLDHVRRNNLTLANTSLVIIDEADRMLDMGFLPDINTIVRQLPKGRQS 180 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTV-WGMRKNEALVRFLE- 241 LFSAT P I+ + F + VR++ I Q + TV G +K L + L+ Sbjct: 181 LLFSATCPPRIQELAATFQNDAVIVRVEPERKGSDHIHQEWITVSHGSQKLGLLKKVLDE 240 Query: 242 -AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 + IIF RTK + +++ AL GY S AL+GD +Q +R + L R + G L +L+ Sbjct: 241 GKSETGQVIIFTRTKRSAEDLSIALNDAGYPSDALHGDKSQPVRNRVLSRFRRGDLKVLV 300 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATDVAARGLD++ I+ V+NYD+P +E YVHRIGRTGRAGR GRAL F +R ++R+I Sbjct: 301 ATDVAARGLDIDGITHVINYDLPQTAEDYVHRIGRTGRAGRTGRALSFFHPADRDIVRSI 360 Query: 361 ERTMKLTIPEVELPNAELLGKRRLEK 386 E IP P++ L ++ L K Sbjct: 361 ETMAGKPIPHS--PHSIPLSEQSLRK 384 >UniRef50_C8WFI7 DEAD/DEAH box helicase domain protein n=3 Tax=Zymomonas mobilis RepID=C8WFI7_ZYMMN Length = 506 Score = 308 bits (790), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 165/398 (41%), Positives = 241/398 (60%), Gaps = 12/398 (3%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 + + +FADLGL +L+A+ +LGYE+P+P+QA IP +L RD++ +AQTG+GKTA+F Sbjct: 10 LVRYFMSFADLGLSKELLQAVAELGYEEPTPVQAAAIPSVLMMRDLIAVAQTGTGKTASF 69 Query: 61 SLPLLQNLD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDV 117 LP++ L + P+ L+L PTRELA QVAE + K+ + +++ L GG Sbjct: 70 VLPMIDILAHGRCRARMPRSLILEPTRELAAQVAENFEKYGKYHK-LSMSLLIGGVPMAE 128 Query: 118 QLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQI 177 Q AL +G +++ TPGRLLD +RG + LS LV+DEAD ML MGFI D+ETI ++ Sbjct: 129 QQAALEKGVDVLIATPGRLLDLFERGKILLSSCEMLVIDEADRMLDMGFIPDIETICTKL 188 Query: 178 PEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALV 237 P QT LFSATMP AI+++ RF+ P+++ I T I Q V K + L Sbjct: 189 PTSRQTLLFSATMPPAIKKLADRFLSNPKQIEISRPATANTLIDQRLIEVSPRSKKKKLC 248 Query: 238 RFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLD 297 L AE AIIF K ++A LE+ G++ ++GDM+Q R LER K+G++ Sbjct: 249 DMLRAEKDHTAIIFCNRKTTVRQLATTLEQQGFSVGQIHGDMSQPERGSELERFKNGQIS 308 Query: 298 ILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLL 357 +L+A+D+AARGLDV+ IS V N+D+P + Y+HRIGRTGR G +G AL FV + + Sbjct: 309 VLVASDIAARGLDVKGISHVFNFDVPTHPDDYIHRIGRTGRGGASGEALTFVTPADEEAI 368 Query: 358 RNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQL 395 IE+ M + IP LG R+ + +K ++ + Sbjct: 369 TAIEKLMGVEIPR--------LGNRKKNAYPSKSEETV 398 >UniRef50_Q3SF48 DEAD/DEAH box helicase n=7 Tax=cellular organisms RepID=Q3SF48_THIDA Length = 533 Score = 308 bits (790), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 171/376 (45%), Positives = 235/376 (62%), Gaps = 5/376 (1%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +F++LGL IL+++ GYE +P+Q + IP L+G D+L + TGSGKTAAF LP +Q Sbjct: 2 SFSELGLDPLILKSVLAAGYENATPVQQQAIPAALSGGDLLVSSHTGSGKTAAFLLPSIQ 61 Query: 67 NL--DPELKA--PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 L +P +K+ P++LVL PTRELA+QV +A + K MR L GG Y +QL+ L Sbjct: 62 RLLAEPAVKSIGPRVLVLTPTRELALQVEKAAMTYGKEMRRFRTACLVGGAPYGLQLKRL 121 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 Q +VV TPGRL+DHL+RG +D S+L LVLDEAD ML MGF++D++ I A+ P Q Sbjct: 122 SQPVDVVVATPGRLIDHLERGKIDFSRLEVLVLDEADRMLDMGFVDDIKAIAARCPAERQ 181 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM-RKNEALVRFLE 241 T LFSAT+ + + R ++ Q + I++ I Q M KN L L Sbjct: 182 TLLFSATLDGVVGNLARELTRDAQRIEIEAVPHKEAKIEQRLLFADNMDHKNRLLDALLR 241 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 + AI+F TK +T E+++ L +G+ S AL+GDM Q R + L+RL++GR +L+A Sbjct: 242 DVEMVQAIVFASTKRSTEEISDLLAESGFASDALHGDMQQGQRNRALQRLREGRTRVLVA 301 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 TDVAARG+DV IS V+N+D+P +E YVHRIGRTGRAGR G A+ F RE L++NIE Sbjct: 302 TDVAARGIDVASISHVINFDLPRQAEDYVHRIGRTGRAGRTGIAVSFAGMREGGLVKNIE 361 Query: 362 RTMKLTIPEVELPNAE 377 R I LP E Sbjct: 362 RYTGNRIEVHTLPGLE 377 >UniRef50_A5UZK3 DEAD/DEAH box helicase domain protein n=8 Tax=Bacteria RepID=A5UZK3_ROSS1 Length = 467 Score = 307 bits (786), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 188/481 (39%), Positives = 262/481 (54%), Gaps = 32/481 (6%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +F I + DLGY P+PIQ + IPH L+GRDV+G+AQTG+GKTAAF LP+LQ Sbjct: 2 SFDSFRFHPQITAGIRDLGYHTPTPIQEQVIPHALDGRDVIGIAQTGTGKTAAFVLPILQ 61 Query: 67 NLDPELKAPQ----ILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 L ++ P+ +++ PTRELA Q+ + K+ G+ V LYGG Y Q++ L Sbjct: 62 RL---MRGPRGRVRAMIVTPTRELAEQIQGVIEALGKYT-GLRSVTLYGGVGYQGQIQRL 117 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 R+G +I V PGRLLDHL+RGTL L L L+LDEAD+M MGF+ DV I+ P Q Sbjct: 118 RRGVEIAVVCPGRLLDHLERGTLTLEHLDMLILDEADQMFDMGFLPDVRRILRLAPAQRQ 177 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 T LFSATMP+AIR + R ++EPQ ++I S ++ + + V K L+ L Sbjct: 178 TMLFSATMPDAIRALAREALREPQTIQIGRSAPV-STVTHAIYPVAEHLKTALLIELLRH 236 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 D + +IF RTK+ +++ L R GY + AL G+M+Q R+ L+ + GR IL+AT Sbjct: 237 TDTGSVLIFTRTKHRAQHLSDTLARMGYRATALQGNMSQNRRQAALDGFRSGRYQILVAT 296 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 D+AARG+DV IS V+NYD+P +E+Y HRIGRTGRA R G A V + ++R IER Sbjct: 297 DIAARGIDVAHISHVINYDMPQTAEAYTHRIGRTGRAARTGDAFTLVTRSDTGMVRAIER 356 Query: 363 TMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLE 422 + + +P + AA S ++ A+ +P ++ E + Sbjct: 357 LIGEPLKRETVPG--------FDYHAAAPAHDARSDHAPRHHAMPRHYEPHSQDERDN-- 406 Query: 423 TLAAALLKMAQGERTLIVP----------PDAPMRPKREFRDRDDRGPR-DRNDRGPRGD 471 A AQ R+ P AP R K RD R R DR+DR G Sbjct: 407 --RAPRRHDAQERRSDTAPRRRDVQEWRSDAAPNRHKPRSRDTSARSTRADRSDRTVSGR 464 Query: 472 R 472 R Sbjct: 465 R 465 >UniRef50_D1BXK2 DEAD/DEAH box helicase domain protein n=6 Tax=Actinomycetales RepID=D1BXK2_XYLCX Length = 605 Score = 307 bits (786), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 162/380 (42%), Positives = 241/380 (63%), Gaps = 15/380 (3%) Query: 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 + +FAD G++ I++AL D+G P PIQA +P L D++G A+TG+GKT F +PL Sbjct: 67 DVSFADFGVRQEIVDALTDVGITHPFPIQAMTLPVALQAHDIIGQAKTGTGKTLGFGIPL 126 Query: 65 LQNL----DP---ELKAP---QILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQR 114 L + +P EL AP Q +V+APTRELAVQVA + S H + V+ +YGG+ Sbjct: 127 LNRVVAPGEPGWDELVAPGKPQAVVVAPTRELAVQVAGDLATASAHRPSLRVIQIYGGRA 186 Query: 115 YDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIM 174 Y+ Q+ L++G ++VVGTPGR++D L +G L+L + +VLDEADEML +GF+ DVE I+ Sbjct: 187 YEPQIEQLQRGAEVVVGTPGRMVDLLNQGHLNLLRAETIVLDEADEMLDLGFLPDVEKIL 246 Query: 175 AQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRI----QSSVTTRPDISQSYWTVWGM 230 +++P T LFSATMP A+ + RR+M +P +R VT + +I Q + + Sbjct: 247 SRLPAKRHTMLFSATMPGAVVSMARRYMSQPTHIRAADPDDEGVTVK-NIKQVVYRAHAL 305 Query: 231 RKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLER 290 K E L R L+AE +I+F RTK +V++ L G+ + A++GD+ Q REQ L Sbjct: 306 DKIEVLARLLQAEGRGRSIVFARTKRTAAKVSDELRDRGFAAGAIHGDLGQGAREQALRA 365 Query: 291 LKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVE 350 L+ G++D+L+ATDVAARG+DV+ ++ VVNY P D +Y+HR+GRTGRAG G A+ FV+ Sbjct: 366 LRHGKIDVLVATDVAARGIDVDDVTHVVNYQCPEDERTYLHRVGRTGRAGNKGTAVTFVD 425 Query: 351 NRERRLLRNIERTMKLTIPE 370 + I++ ++ PE Sbjct: 426 WDDMPRWSLIDKALETGHPE 445 >UniRef50_C9KJK1 ATP-dependent RNA helicase DeaD n=3 Tax=Veillonellaceae RepID=C9KJK1_9FIRM Length = 441 Score = 306 bits (784), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 155/356 (43%), Positives = 225/356 (63%), Gaps = 1/356 (0%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 TTF +LG++ + + L G ++ +P+Q + +P + G D + AQTG+GKT AF LP++ Sbjct: 2 TTFQELGIRPALCDVLRSHGIKEATPVQEKAMPLVRAGHDCIVKAQTGTGKTLAFLLPII 61 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 + + P+ Q LV+ PTRELA+Q+A+ S ++ + ++GGQ + Q + LR+ Sbjct: 62 EKIKPQAAVTQALVITPTRELAIQIAKVAQSLSA-AADISSLVIFGGQDIERQKQKLRRH 120 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 PQ+++GTPGRLLDHL+R T+DLS+++ +VLDEADEM+R+GFIEDVET++ Q L Sbjct: 121 PQLIIGTPGRLLDHLRRQTIDLSQVNKVVLDEADEMMRLGFIEDVETLLEATAADRQLML 180 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSATMP+ ++ ++ R+M PQ + I+S T I Q K + L + E Sbjct: 181 FSATMPDRVKALSARYMTAPQNLEIKSEHVTLDAIDQVIIDTREETKIDKLCEIINQEQP 240 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 A++F TK V AL GY L+GD++Q R L+R + L IL ATD+A Sbjct: 241 YLAMVFCHTKQRAHMVTMALAARGYLVDELHGDLSQVQRTLVLKRFRKAELQILCATDIA 300 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 ARGLD+E ++ V NYDIP D+ESY+HRIGRTGRAG G+A+ FV R+ LLR IE Sbjct: 301 ARGLDIEGVTHVFNYDIPHDAESYIHRIGRTGRAGERGKAITFVNARQYDLLRRIE 356 >UniRef50_C6WW85 DEAD/DEAH box helicase domain protein n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WW85_METML Length = 576 Score = 305 bits (782), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 168/361 (46%), Positives = 225/361 (62%), Gaps = 6/361 (1%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +F L L IL A+ + GY P+PIQA+ IP ++ G D++ AQTG+GKTA F LP L Sbjct: 2 SFESLNLNPAILRAIEETGYTTPTPIQAQAIPVVMEGHDLMASAQTGTGKTAGFMLPALN 61 Query: 67 NL----DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 L + + P+ILVL PTRELA QV EA + K +R V++ GG Y +Q + L Sbjct: 62 LLATPHESRSRGPRILVLTPTRELAAQVNEAARKYGKFLR-ARTVSIVGGMPYPLQNKLL 120 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 Q I+V TPGRLLDH++RG +DLS+L L+LDEAD ML MGF+ DVE I Q+ Q Sbjct: 121 SQPLDILVATPGRLLDHMERGRIDLSRLQMLILDEADRMLDMGFLPDVERICEQLSAERQ 180 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM-RKNEALVRFLE 241 T LFSAT+ I RI ++ +K P+ V++ + +I Q V M KN+ L L Sbjct: 181 TLLFSATLDGDIARIAQQILKNPKTVQVAAQKEKHANIEQRLHFVDDMTHKNKLLEHLLI 240 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 A + + IIF TK +AE L G+ +AAL+GDM Q R +TL +L+ G + +L+A Sbjct: 241 APEVNQTIIFTSTKRHADVLAEDLYAAGHKTAALHGDMTQGARNRTLTKLRHGDVKVLVA 300 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 TDVAARG+DV I+ V+NYD+P +E YVHRIGRTGRA G A+ F N +R LLR IE Sbjct: 301 TDVAARGIDVHGITHVINYDLPKFAEDYVHRIGRTGRANNTGIAISFASNMDRHLLRKIE 360 Query: 362 R 362 + Sbjct: 361 Q 361 >UniRef50_B7IA63 DEAD/DEAH box helicase n=17 Tax=Acinetobacter RepID=B7IA63_ACIB5 Length = 615 Score = 305 bits (780), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 169/381 (44%), Positives = 235/381 (61%), Gaps = 16/381 (4%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 TFA+ L + +AL LG+ P+P+Q + IP L G+D+L +QTGSGKTAAF LP L Sbjct: 4 TFAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLH 63 Query: 67 NLDPE---------LKA---PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQR 114 NL + +KA P ILVL PTRELA QV++ F +HM+GV + A+ GG Sbjct: 64 NLAGQDTFVPFKERMKAVTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMP 123 Query: 115 YDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIM 174 + Q++ L+ G Q+VV TPGRLLD + R L L K+ L++DEAD ML +GF ED+E I Sbjct: 124 FGKQIQQLK-GAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAIS 182 Query: 175 AQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQS-YWTVWGMRKN 233 QT +FSAT + I R+ R M EP+ + I++ +T DI+Q+ +WT K Sbjct: 183 DLAANRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKK 242 Query: 234 EALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKD 293 + L +L E D A++F T+ T +AE L G++ AL+G M Q +R + L +++ Sbjct: 243 KLLTHWLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIRE 302 Query: 294 GRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRE 353 GR IL+ATDVAARGLDV IS V+N+ +PM E YVHRIGRTGRAGR G+A+ RE Sbjct: 303 GRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATYRE 362 Query: 354 RRLLRNIERTM--KLTIPEVE 372 R +R +E + +L + E+E Sbjct: 363 RGKIRALEDYLEARLNVSEIE 383 >UniRef50_C1CWT4 Putative DEAD-box ATP-dependent RNA helicase 3 n=1 Tax=Deinococcus deserti VCD115 RepID=C1CWT4_DEIDV Length = 602 Score = 304 bits (779), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 184/431 (42%), Positives = 255/431 (59%), Gaps = 26/431 (6%) Query: 13 LKAPILEA-LNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE 71 L AP L A L + G + SPIQAE +P L GRD++G A+TG+GKT AF+LP++Q L+P Sbjct: 6 LIAPELAARLAERGITEASPIQAESLPLTLAGRDMIGRARTGTGKTLAFALPIIQKLEPS 65 Query: 72 ---LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQI 128 + P+ +V+APTRELA QVAE +FSK G+ V +YGG Y Q ALR+G + Sbjct: 66 RERARPPRAIVVAPTRELAKQVAE---EFSKSGVGLTTVTVYGGASYAPQENALRRGVDV 122 Query: 129 VVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSA 188 VVGTPGRL+DHL+RG LDLS + VLDEADEML +GF + +ETI+ + P+ QT LFSA Sbjct: 123 VVGTPGRLIDHLERGNLDLSAVEFAVLDEADEMLSVGFADAIETILQKTPDSRQTMLFSA 182 Query: 189 TMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTV-WGMRKNEALVRFLEAEDFDA 247 T+ I R++R +++EP V + ++ + + V G + L L + + Sbjct: 183 TLNNDINRLSRNYLREPVIVDMVGEGKSQAAQTVEHLKVRVGRSRTRVLADLLTIYNPEK 242 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 AI+F RTK E+A L G + AL+GD+ Q+ RE+ L + GR+ +L+ATDVAAR Sbjct: 243 AIVFTRTKREADELANELIHRGLEAEALHGDLAQSQRERALGAFRSGRVGVLVATDVAAR 302 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 GLD+ + LVV Y +P D ESYVHR GRTGRAGR G A++ +RE R + +ER + Sbjct: 303 GLDIPEVDLVVQYHLPQDPESYVHRSGRTGRAGRTGTAIIMYGDRENREVMGLERITGVR 362 Query: 368 IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGE------ELDL 421 E LP + +VQ + D R + S + T + E EL L Sbjct: 363 FIERPLPTPK------------EVQAASAKTSADMVRKVDSGVAATFQAEAERLFSELGL 410 Query: 422 ETLAAALLKMA 432 E L AL K++ Sbjct: 411 EALTRALAKIS 421 >UniRef50_D2B0M6 Putative uncharacterized protein n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2B0M6_STRRD Length = 697 Score = 304 bits (778), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 164/371 (44%), Positives = 233/371 (62%), Gaps = 7/371 (1%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 TTF DLG+ I +AL G P PIQ +P LNG+D++G A+TG+GKT AF + +L Sbjct: 39 TTFRDLGVTPEIADALETEGIITPFPIQEMALPLALNGQDIIGQARTGTGKTYAFGVAML 98 Query: 66 QNLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 Q + K P+ LV+ PTRELAVQV E + + + G ++ +YGG+ Y+ Q+ AL Sbjct: 99 QRVGKPRKNRKKPRGLVVVPTRELAVQVTEDLVTAAGKL-GSRILTVYGGRAYEPQVEAL 157 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 +QG ++VGTPGRLLD +K+ LDL ++ LVLDEAD ML +GF+ D+E I+ IPE Q Sbjct: 158 KQGVDVIVGTPGRLLDLVKQKHLDLGQIDVLVLDEADRMLDLGFLPDIERIIKLIPEKRQ 217 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSS---VTTRPDISQSYWTVWGMRKNEALVRF 239 T LFSAT+P I ++RR++ P VR +++ P +Q W M K E + R Sbjct: 218 TMLFSATLPGEIVALSRRYLTRPTHVRAENNDAEAEATPQTTQFVWRAHRMDKIEIVGRL 277 Query: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299 L+ + +IF TK A V E L+ G+ +AA++GD+ Q REQ L ++G++D+L Sbjct: 278 LQCDGRGLTMIFCETKRACDMVVEQLKERGFAAAAVHGDLGQGQREQALRAFRNGKIDVL 337 Query: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359 +ATDVAARG+DV+ ++ VVNYD P D ++YVHRIGRTGRAG+ G A+ FVE + + Sbjct: 338 VATDVAARGIDVDDVTHVVNYDCPQDEKAYVHRIGRTGRAGKTGVAVTFVEWEDLTRWKV 397 Query: 360 IERTMKLTIPE 370 I + L E Sbjct: 398 INNALSLDFAE 408 >UniRef50_B8ILJ8 DEAD/DEAH box helicase domain protein n=10 Tax=Alphaproteobacteria RepID=B8ILJ8_METNO Length = 506 Score = 304 bits (778), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 161/376 (42%), Positives = 233/376 (61%), Gaps = 8/376 (2%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 T F D GL API++AL + GY P+PIQA+ +P + GRD+ G+AQTG+GKTAAF+LP+L Sbjct: 2 TQFVDFGLAAPIMKALAETGYVTPTPIQAQAVPPAMTGRDLCGIAQTGTGKTAAFALPIL 61 Query: 66 QNL---DPELKAPQ----ILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQ 118 L P +AP+ +LVL+PTRELA Q+A++ D+ K + + ++GG Q Sbjct: 62 HRLASETPAKRAPRRGCRVLVLSPTRELASQIADSFRDYGKFL-PFSTTVVFGGVTIGRQ 120 Query: 119 LRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP 178 RAL G ++V TPGRLLD + R +L L + LVLDEAD+ML +GFI ++ I+ +P Sbjct: 121 ERALANGIDVLVATPGRLLDLVDRRSLSLDSVEYLVLDEADQMLDLGFIHALKRIVTLLP 180 Query: 179 EGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVR 238 + Q+ FSATMP+ I + +++++P +V + TT + Q V K L Sbjct: 181 KARQSLFFSATMPKNIATLAAQYLRDPVQVAVTPVATTAERVEQRVIHVSTGAKQALLGT 240 Query: 239 FLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDI 298 L E D ++F RTK+ V LE+ G SAA++G+ +Q RE+ L + G + Sbjct: 241 ILRDESIDRVLVFTRTKHGADRVVRGLEKVGIGSAAIHGNKSQPQRERALAAFRAGTCRV 300 Query: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLR 358 L+ATD+AARG+DVE ++ VVN+D+P E+YVHRIGRT RAG G A+ F ER LR Sbjct: 301 LVATDIAARGIDVEGVTHVVNFDLPNVPEAYVHRIGRTARAGADGLAISFCNEEERAYLR 360 Query: 359 NIERTMKLTIPEVELP 374 +IER + +PE+ +P Sbjct: 361 DIERLTRQKVPEMAIP 376 >UniRef50_Q0G0P8 Superfamily II DNA and RNA helicase n=1 Tax=Fulvimarina pelagi HTCC2506 RepID=Q0G0P8_9RHIZ Length = 457 Score = 304 bits (778), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 158/368 (42%), Positives = 236/368 (64%), Gaps = 9/368 (2%) Query: 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 TTF GL P+ AL L P+PIQ IPH L GRD+LG+AQTG+GKTAAF+LPL Sbjct: 3 STTFDGFGLAEPLTRALARLELTTPTPIQERAIPHALAGRDMLGIAQTGTGKTAAFALPL 62 Query: 65 LQNL-----DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119 L +L P + + L+L+PTRELAVQ+AE++ D S+ ++ ++GG Q+ Sbjct: 63 LHHLMTVGGKPTTRTTKALILSPTRELAVQIAESIADLSEGT-PISHCVVFGGVSVRPQI 121 Query: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179 +AL +G I+V TPGRLLD +++ +DL + L+LDEAD ML MGF+ DV I+ + P+ Sbjct: 122 QALARGVDILVATPGRLLDLMEQRAIDLRETRHLILDEADRMLDMGFVRDVMKIVGKCPD 181 Query: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239 Q+ +FSATMP+ I ++++ + PQ+V + +V T I+QS ++V K L+ F Sbjct: 182 DRQSMMFSATMPKPIEDLSKKILTNPQKVSVTPAVVTVEKIAQSVFSVPQRAKKHWLIDF 241 Query: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299 + D ++F RTK+ + L++ G + A++G+ +Q R++ L +DG +D+L Sbjct: 242 VSKNDTGRIVVFTRTKHGANRLTSDLDKAGIQALAIHGNKSQTARQKALGAFQDGEIDVL 301 Query: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359 +ATD+ ARG+ V+ IS VVN+D+P + ESYVHRIGRT RAGR+G+A+ V+ ER L+ Sbjct: 302 VATDIVARGIHVDDISHVVNFDLPEEPESYVHRIGRTARAGRSGQAIALVDPSERAKLKQ 361 Query: 360 IERTMKLT 367 I +KLT Sbjct: 362 I---IKLT 366 >UniRef50_C4G990 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4G990_9FIRM Length = 538 Score = 303 bits (777), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 157/367 (42%), Positives = 233/367 (63%), Gaps = 4/367 (1%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F++ GLK +L A+ GYE+P+P+Q E IP +L GRD++G AQTG+GKTAAF+LP+L Sbjct: 64 FSEFGLKKDLLSAIRKAGYEEPTPVQEESIPVILEGRDMIGCAQTGTGKTAAFALPVLHK 123 Query: 68 LDPELKAPQI--LVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 L LK P++ LVL PTRELA+Q+ + + +++ + V LYGG + Q+ ALR+G Sbjct: 124 LTL-LKRPRVRALVLTPTRELAIQIFDNFKKYGRYLH-LRTVCLYGGAKRGPQIGALRRG 181 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 I+V TPGRLLD + + +DLS + LVLDEAD ML MGF+ DV I+ P QT + Sbjct: 182 ADILVATPGRLLDFMGQDLVDLSSVEILVLDEADRMLDMGFLPDVSRIVESTPSKRQTLM 241 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSATM + +R++ R +K+P +V++ + Q K E + L E Sbjct: 242 FSATMEKEVRQLADRMLKDPVQVQVTPENEAADTVEQKLIFSSREDKREIIASLLTDEAV 301 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 ++AI+F RTK+ +++ L+R G S A++GD Q R+ L R K G++ +++ATDVA Sbjct: 302 ESAIVFTRTKHGADKLSRELKRRGIESVAIHGDKTQGQRQDALNRFKSGKVRVMVATDVA 361 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARGLD+ ++S V NYD+P ++ +Y+HRIGRTGRAG +G A+ E LR +E ++ Sbjct: 362 ARGLDIPKLSHVFNYDVPEEAGAYIHRIGRTGRAGESGIAITLCCEAELDALREVEELLE 421 Query: 366 LTIPEVE 372 IPE++ Sbjct: 422 KPIPELQ 428 >UniRef50_C4V5M7 DEAD/DEAH box helicase domain protein n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V5M7_9FIRM Length = 426 Score = 303 bits (777), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 158/363 (43%), Positives = 220/363 (60%), Gaps = 1/363 (0%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 T F LG+ + L G +P+P+Q + IP + GRDV+ AQTG+GKT A+ LPLL Sbjct: 2 THFDQLGISETLTALLQKQGITQPTPVQEQAIPPMRAGRDVIAQAQTGTGKTLAYLLPLL 61 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 + P+ A Q LV+APTRELA+Q+ ++ + G+ +YGG + Q LR+ Sbjct: 62 ARIKPQGAAAQALVIAPTRELAIQIEHVAASLAEPL-GIGTTVIYGGADIERQKEKLRRS 120 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 PQ+V+GTPGRLLDH++RGTL L +++ +VLDEADEML+MGFIEDVET++ + +Q AL Sbjct: 121 PQLVIGTPGRLLDHVRRGTLALGRVNKVVLDEADEMLKMGFIEDVETLLGAAAQDYQLAL 180 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSATMPE I R+T+RFM P +R+ T I Q V K + L + E Sbjct: 181 FSATMPERIVRLTKRFMTNPAHIRLAGETVTLAAIEQVVIPVSAGDKLDRLCASINEEAP 240 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 A++F TK T + L + GY AL+GD+ Q R L + + +L IL ATD+A Sbjct: 241 YLAMVFCATKERTRALMMELAQRGYLVDALSGDLTQTQRSFVLRQFRSAKLQILCATDIA 300 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARGLD+E ++ V NYD+P Y+HRIGRTGRAG G+A+ V + LR +E +K Sbjct: 301 ARGLDIEGVTHVYNYDLPPTVTDYIHRIGRTGRAGTQGKAITLVAPHQHEKLRKMEAALK 360 Query: 366 LTI 368 + Sbjct: 361 ACL 363 >UniRef50_D2MPZ3 Putative ATP-dependent RNA helicase RhlE n=1 Tax=Bulleidia extructa W1219 RepID=D2MPZ3_9FIRM Length = 425 Score = 303 bits (777), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 161/364 (44%), Positives = 221/364 (60%), Gaps = 2/364 (0%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 TF + L+ P+L++L Y+KPSPIQ + IP LL G D++ AQTG+GKTA F+LP+L Sbjct: 2 TFNEFNLRKPLLDSLAKASYKKPSPIQEKGIPILLEGSDLIACAQTGTGKTATFALPILN 61 Query: 67 NLDPELK-APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 +L E + + L+L PTRELA Q+ E + F ++M + +YGG QL+A+R G Sbjct: 62 SLSKEKNHSIRALILTPTRELATQIFENIKMFGRYMH-LRACCVYGGSPAAPQLKAIRSG 120 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 I++ TPGRLLD+L G + L + LVLDEAD ML MGFI DV I+ QIP TAL Sbjct: 121 CDILIATPGRLLDYLAHGKISLRHIEFLVLDEADRMLDMGFIADVRKIVQQIPNDRITAL 180 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSATMP+ I+ + R +K P+EVRI++ T I Q K + LV L E Sbjct: 181 FSATMPKEIQELARDILKNPKEVRIEAEKFTASTIDQYLIYTEKSSKKKVLVNLLNTESI 240 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 I+F RTK + + L+ ++GD Q R L+R + ++ ILIATDVA Sbjct: 241 KKTIVFTRTKIGADRLEKYLKEKEIACLVIHGDKTQGQRLNALQRFRTNQIRILIATDVA 300 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARG+D++ IS V+N+D+P D E+YVHRIGRTGRA + G ++ V E LL NIE ++ Sbjct: 301 ARGIDIKDISHVINFDLPEDIENYVHRIGRTGRAKQEGVSISLVCKEELNLLANIESYIQ 360 Query: 366 LTIP 369 IP Sbjct: 361 FQIP 364 >UniRef50_D2QY81 DEAD/DEAH box helicase domain protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2QY81_9PLAN Length = 458 Score = 303 bits (776), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 162/376 (43%), Positives = 237/376 (63%), Gaps = 3/376 (0%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 TFA + L ++ AL GYE P+PIQA IP L G DV+G A+TG+GKTA+F +P+L+ Sbjct: 13 TFASMDLSDQMMAALEKAGYEYPTPIQAGLIPRALEGVDVVGQARTGTGKTASFVIPILE 72 Query: 67 NLDPELKAP--QILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 LD E AP Q L+L PTRELAVQV + + S+ ++ +N A+YGG+ Q+ L++ Sbjct: 73 LLDIERGAPTPQALILVPTRELAVQVRDEVVKLSEGLK-INCAAVYGGKPIKSQVDKLKK 131 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 G +VVGTPGR+LDH+ RGT+D + + +VLDEAD ML +GF D+E I+ + P QT Sbjct: 132 GCHVVVGTPGRVLDHIARGTIDFTHIECVVLDEADRMLDIGFRPDIERILKRCPRERQTL 191 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 L SAT+P I ++ +R+M EP+ + + + I Q Y+TV RK + L++ L E+ Sbjct: 192 LLSATVPPPIAKLAQRYMYEPEMLNFSPADVSVDTIEQKYFTVEHDRKFDLLMKLLLREE 251 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 AI+F RTK T +V + L + N+AA++GD++Q R++ + +DG + L+ATDV Sbjct: 252 PKQAIVFCRTKRGTDKVYQKLTKKLGNTAAIHGDLSQGQRDRVMAGFRDGSVRYLVATDV 311 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 RG+DV +S +VN+DIP+ + YVHR+GRTGR GR G A FV E L IE + Sbjct: 312 IGRGIDVSTVSHIVNFDIPVFCDDYVHRVGRTGRMGREGVAYTFVCPDEGHELTRIEERI 371 Query: 365 KLTIPEVELPNAELLG 380 + E+ + E +G Sbjct: 372 NKLLKRDEMRDFEPVG 387 >UniRef50_A7HKQ8 DEAD/DEAH box helicase domain protein n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=A7HKQ8_FERNB Length = 571 Score = 303 bits (775), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 194/535 (36%), Positives = 296/535 (55%), Gaps = 40/535 (7%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNG-RDVLGMAQTGSGKTAAFSLPLLQ 66 F D GL IL A+ GYEKP+ IQ +P+ L+ +D++ AQTG+GKTAAF +PLL+ Sbjct: 20 FEDFGLSEEILLAIQKKGYEKPTEIQKIVLPYALSTDKDLIAQAQTGTGKTAAFGIPLLE 79 Query: 67 NLDPEL-KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 +D + K + +++ PTRELA+Q+ E + K + V + LYGGQ + Q + L +G Sbjct: 80 RIDFKANKFVKAIIVTPTRELALQIFEELKSL-KGTKRVKITTLYGGQSLEKQFKDLEKG 138 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 IVVGTPGR++DHL R TLDLS + LVLDEAD ML MGF++DV I+ + E +T L Sbjct: 139 VDIVVGTPGRIIDHLNRDTLDLSHVEYLVLDEADRMLDMGFLDDVLEIIKRTGENKRTFL 198 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSATMP+ I I R+FMKE V T + Q Y+ V K L R ++ Sbjct: 199 FSATMPKEIVDIARKFMKEYIHVSTVKDELTTENAEQLYFEVDEKDKLPLLCRIIDMNPD 258 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 I+F +TK E+++ L GYN+ L+GD +Q RE+ L++ + +L IL+ TDVA Sbjct: 259 FYGIVFCQTKLEVDEISKKLLDLGYNADGLHGDYSQYQRERVLDKFRKKQLRILVTTDVA 318 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARG+D++ ++ V+NY +P D E YVHRIGRTGRAG+ G A+ FV + ++R K Sbjct: 319 ARGIDIDGLTHVINYSVPRDPEYYVHRIGRTGRAGKKGFAITFVTRDDYFHFARVKRFAK 378 Query: 366 LTIPEVELPNAELLGKRRLEKF------AAKVQQQLESSDLDQYRALLSKIQPTAEGEEL 419 I + +P E + R+LEK A KV +L Q ++ ++ PT E E+ Sbjct: 379 AKIIKDSIPQVEDILNRQLEKLLDTLKNAPKVSNELYKRAAQQ---IIEEMGPT-EAVEM 434 Query: 420 DLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRD-DRGPRDRNDRGPRGDREDRPRR 478 L TL + +++ ++PK + R+ + G ++N Sbjct: 435 LLHTLIKDKIDVSRY---------GDVKPKNFSKGREQNFGDSNKN-------------- 471 Query: 479 ERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIEL 533 D G ++L+ + +G G++ + +V I+ + I N+K+F + S I++ Sbjct: 472 --VDSGSVRLF-VNMGSSKGLDKKKLVEFISERTGVEPSNINNVKVFENFSFIDV 523 >UniRef50_Q480Z7 ATP-dependent RNA helicase, DEAD box family n=2 Tax=Alteromonadales RepID=Q480Z7_COLP3 Length = 399 Score = 303 bits (775), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 155/376 (41%), Positives = 237/376 (63%), Gaps = 10/376 (2%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 M+EF+ L I++ +N GY++P+PIQ ECIP L+NG D+LG+AQTG+GKTAAF Sbjct: 1 MSEFKA----FSLLESIIDRVNLKGYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAF 56 Query: 61 SLPLLQN-----LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRY 115 SLP++ +D + K+ + L+L PTRELA Q+ + + D+S + G+ +YGG Sbjct: 57 SLPIINKFGRNKIDIKAKSTRSLILTPTRELASQIMQNIDDYSDGL-GLKTKVVYGGVGR 115 Query: 116 DVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMA 175 Q+ ++ G I+V TPGRLLD ++ G ++ L VLDEAD ML MGF +DV++I++ Sbjct: 116 QAQVDSIELGLDILVATPGRLLDLIETGDINFKALEVFVLDEADTMLDMGFFKDVQSIIS 175 Query: 176 QIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA 235 ++P+ QT LFSATMP I + + +P +++I + T ++QS + + K Sbjct: 176 KLPKSRQTLLFSATMPAEIEILAEAILTDPTKIQITAETVTIDLVNQSVYHLDKSNKVPL 235 Query: 236 LVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGR 295 L L D++ +IF +TK + +ALE+ +A+L+ QA+RE+ L+ KD Sbjct: 236 LFNILTKADYEKVLIFCKTKYGADIIVKALEKASITAASLHSGKTQAVREEALQNFKDST 295 Query: 296 LDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERR 355 L +L+ATDVAARG+DV+ I+LV+NY++P D +Y+HRIGRT RAG++G A+ F + R Sbjct: 296 LRVLVATDVAARGIDVDNITLVINYNLPEDPRNYIHRIGRTARAGKSGMAISFAVENDIR 355 Query: 356 LLRNIERTMKLTIPEV 371 L NIE ++ IP V Sbjct: 356 QLTNIENSIGQVIPVV 371 >UniRef50_D0MH79 DEAD/DEAH box helicase domain protein n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MH79_RHOM4 Length = 505 Score = 303 bits (775), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 173/425 (40%), Positives = 252/425 (59%), Gaps = 9/425 (2%) Query: 19 EALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQIL 78 +A +G+ + P+Q +P+LL GRDV+ +QTGSGKT AF LPL + LDP Q L Sbjct: 51 QAARAIGWTELMPVQRRTLPYLLEGRDVIVQSQTGSGKTGAFLLPLFERLDPSRGQVQAL 110 Query: 79 VLAPTRELAVQVAEAMTDFSKHMRG---VNVVALYGGQRYDVQLRALRQGPQIVVGTPGR 135 +L PTRELA Q++EA + G + V +YGG RY QL+AL QG Q+V+GTPGR Sbjct: 111 ILTPTRELARQISEAFEQMKTGVSGAQSLRAVLVYGGVRYGPQLKALEQGAQVVIGTPGR 170 Query: 136 LLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIR 195 +LD ++RG L L L LV DEADEML MGF + + +P TA+FSATMP ++ Sbjct: 171 ILDLIERGALRLGALQVLVFDEADEMLSMGFYPAMRQLKRYLPRERNTAMFSATMPPRVQ 230 Query: 196 RITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTK 255 + R F+K+P V + + I Y+ V M K+ ALV+ +E E+ ++AIIF TK Sbjct: 231 ALAREFLKDPAFVSLSTDRIAAETIEHRYFIVPPMEKDRALVQLIELENPESAIIFANTK 290 Query: 256 NATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERIS 315 + + L+ GYN+ A+ GD+ Q RE+ ++RL+ G+L +L+ATDVAARG+D+ +S Sbjct: 291 RDVEYLGQFLKNYGYNADAITGDLPQKQRERIMDRLRKGQLRLLVATDVAARGIDISDLS 350 Query: 316 LVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPN 375 V YD+P D E YVHR GRTGR G+ G ++ V E LR I R + + + LP Sbjct: 351 HVFMYDVPQDPEYYVHRSGRTGRVGKEGTTIVLVTPLEEARLRAIARQYDIPLEKGTLPT 410 Query: 376 AELLGKRRLEKFAAKVQQQL-ESSDLDQYRALLSKIQPTAE---GEELDLETLAAALLKM 431 E + +R E+ A ++ + E++ LD+ R +++ P E EE +L + L + Sbjct: 411 PETVAERVAERAVALLEDRYRETTSLDRER--IARFVPLVEQLAQEEPELLAMLVDALYV 468 Query: 432 AQGER 436 +G R Sbjct: 469 HEGHR 473 >UniRef50_A7K2L3 ATP-dependent RNA helicase n=17 Tax=Vibrionaceae RepID=A7K2L3_VIBSE Length = 419 Score = 303 bits (775), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 155/367 (42%), Positives = 231/367 (62%), Gaps = 3/367 (0%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 FADLG++ ++E L++L P+P+Q + IPH+L G+++L AQTG+GKTAAF LP++ Sbjct: 3 VNFADLGIEQKLIETLSNLNIVTPTPVQEKSIPHVLEGKNLLAAAQTGTGKTAAFGLPII 62 Query: 66 QNLDPEL--KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 Q + + PQ LVL PTRELA QV + + +S + +V +YGG VQ R L Sbjct: 63 QTVQQKKLNGTPQALVLVPTRELAQQVFDNLNQYSAQTE-LRIVCVYGGTSIGVQKRKLE 121 Query: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183 +G I++ TPGRLLDHL G +++SK S LVLDEAD ML MGF D++ I ++P Q Sbjct: 122 EGADILIATPGRLLDHLFNGNVNISKTSMLVLDEADRMLDMGFWPDLQRIFRRLPAEKQI 181 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAE 243 LFSAT + I+ I + M+ P EV + + TT + Q + V RK E L + + Sbjct: 182 LLFSATFEKRIKTIAYKLMESPVEVEVSPANTTAETVKQMVYPVDKKRKRELLAYLIGSR 241 Query: 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 303 ++ ++F +TK + E+A+ L+ +G + ++NGD +Q R++ L+ K G++ LIATD Sbjct: 242 NWQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVRALIATD 301 Query: 304 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 363 VAARGLD++ + VVN+D+P +E YVHRIGRTGRAG++G A+ + E LL IE Sbjct: 302 VAARGLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSLMSRDEEYLLHAIENL 361 Query: 364 MKLTIPE 370 + +P+ Sbjct: 362 LDQRLPQ 368 >UniRef50_Q4FSS4 Possible ATP-dependent DEAD/DEAH box RNA-helicase n=5 Tax=Proteobacteria RepID=Q4FSS4_PSYA2 Length = 567 Score = 301 bits (772), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 165/365 (45%), Positives = 226/365 (61%), Gaps = 5/365 (1%) Query: 3 EFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSL 62 E + TF DL + PIL AL GY P+PIQAE IP L GRD+L AQTGSGKTAAF + Sbjct: 41 ENKVTFTDLNIAKPILSALERSGYTHPTPIQAEAIPFALQGRDLLLSAQTGSGKTAAFVI 100 Query: 63 PLLQNLDPEL---KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119 P+L L K + L+L PTRELA QV +++ +SK MRG+ V L GG Y+ Q+ Sbjct: 101 PVLDRLSRATSFDKLTKALILTPTRELAQQVHDSVRTYSKDMRGLFCVPLVGGAPYNGQI 160 Query: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179 AL++G Q++V TPGRLLDH+ G +DLS L LVLDEAD ML MGF +D+ I+ P Sbjct: 161 TALKKGVQVIVATPGRLLDHINAGRVDLSSLEILVLDEADRMLDMGFADDISDILRAAPI 220 Query: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239 QT + SAT + +I F K P+ V I+ V + + Y+ KN L + Sbjct: 221 DRQTIMCSATWDGPVGKIAASFTKNPERVSIK--VESAHIEEKVYYCDDFDHKNRLLDKI 278 Query: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299 + +D + IIF TK +T ++A+ L+ G+ ++ L+GD+ Q+ R + ++ L++G+ IL Sbjct: 279 VCHKDMEQIIIFAATKRSTEKLAKQLQEAGHKASFLHGDLPQSKRNRIVQDLRNGKCKIL 338 Query: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359 +ATDVAARGLDV +S V+NYD+P +E YVHRIGR GRAGR G A+ +R L Sbjct: 339 VATDVAARGLDVPALSHVINYDLPRQTEDYVHRIGRCGRAGRTGVAISLCSMDDRPQLNA 398 Query: 360 IERTM 364 I R + Sbjct: 399 INRYL 403 >UniRef50_Q2RQT0 DEAD/DEAH box helicase n=59 Tax=root RepID=Q2RQT0_RHORT Length = 799 Score = 301 bits (772), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 159/366 (43%), Positives = 231/366 (63%), Gaps = 4/366 (1%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 TFADLGL L A+ ++GY P+PIQ + IP++ GRDVLG+AQTG+GKTA+F+LP++ Sbjct: 2 TFADLGLSPETLRAIEEVGYTTPTPIQVQAIPYVQMGRDVLGIAQTGTGKTASFTLPMID 61 Query: 67 NL---DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 L + + P+ L+LAPTRELA QV+E T + K+ + +++ L GG+ + Q + L Sbjct: 62 ILASGKAKARMPRSLILAPTRELATQVSENFTLYGKYQK-LSMALLIGGESMNEQQKVLD 120 Query: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183 +G +++ TPGRL+D +RG++ L + LV+DEAD ML MGFI DVE I+A +P+ QT Sbjct: 121 RGVDVLIATPGRLIDLFERGSILLRDVKVLVIDEADRMLDMGFIPDVERIVALLPKIRQT 180 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAE 243 FSATM + IRR+ F+ P+EVRI+ + + Q+ V K EAL + L E Sbjct: 181 LFFSATMDKEIRRLADAFLMNPKEVRIEPTQKVAETVEQALIMVKASEKREALRQLLRRE 240 Query: 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 303 A IF K + ++L +G++ AL+GDM Q +R + LE+ K + +++ +D Sbjct: 241 TVTNAFIFCNRKRDVDVLYKSLSGHGFDILALHGDMPQYVRTERLEKFKRAEVQLMVCSD 300 Query: 304 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 363 VAARG+DV +S V N+D+P E Y+HRIGRTGRAGR GRA + + LR IE Sbjct: 301 VAARGIDVTEVSHVFNFDVPTHPEDYIHRIGRTGRAGRLGRAYTLATPEDAKYLRAIENL 360 Query: 364 MKLTIP 369 + TIP Sbjct: 361 LGKTIP 366 >UniRef50_Q82T78 RhlE; ATP-dependent RNA helicase RhlE n=1 Tax=Nitrosomonas europaea RepID=Q82T78_NITEU Length = 498 Score = 301 bits (771), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 158/370 (42%), Positives = 236/370 (63%), Gaps = 13/370 (3%) Query: 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 + TFA LGL + IL A+ND GY P+PIQA+ IP +L G+DV+ AQTG+GKTA F+LPL Sbjct: 4 DVTFAQLGLSSEILHAVNDEGYVNPTPIQAQVIPSILAGKDVMASAQTGTGKTAGFTLPL 63 Query: 65 LQNL--------DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYD 116 L L P + L++APTRELA+Q+ E++ + K++ + ++GG + Sbjct: 64 LYRLQAYANTSVSPARHPVRALIMAPTRELAMQIDESVRKYGKYL-ALRTAVVFGGINIE 122 Query: 117 VQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQ 176 Q+ AL+ G +I+V TPGRLLD +++ ++ SK LVLDEAD ML MGF+ D++ +MA Sbjct: 123 PQIAALQAGVEILVATPGRLLDLVEQKAVNFSKTEILVLDEADRMLDMGFLPDIKRVMAL 182 Query: 177 IPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM--RKNE 234 + Q+ +FSAT IR++ +K+P VRI+++V + S S+ W K Sbjct: 183 LSPQRQSLMFSATFSGEIRKLADSLLKQP--VRIEAAVQNTVNESISHVIHWVKPDSKFA 240 Query: 235 ALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDG 294 L+ + ++ A+IFV+TK+ +A+ L R+ ++ A++GD NQ R Q L K G Sbjct: 241 LLLHLIRQQNLKQALIFVKTKHGASHLAQMLSRHEISAVAIHGDRNQQQRTQALAEFKHG 300 Query: 295 RLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRER 354 + IL+ATDVAARG+D+E++S V+NY++P + E YVHRIGRTGRAG G+A+ V E+ Sbjct: 301 DVQILVATDVAARGIDIEKLSHVINYELPGNPEDYVHRIGRTGRAGSKGKAISLVSEHEK 360 Query: 355 RLLRNIERTM 364 LL NIE+ + Sbjct: 361 ELLANIEKLL 370 >UniRef50_D1U888 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U888_9DELT Length = 551 Score = 301 bits (771), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 177/435 (40%), Positives = 252/435 (57%), Gaps = 15/435 (3%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGR-DVLGMAQTGSGKTAAFSLPL 64 T F +LGL L AL G+ P+PIQ IP LL G D++G AQTG+GKTAAF LP+ Sbjct: 2 TDFKELGLSEETLAALESKGFTCPTPIQERTIPLLLQGAVDIVGQAQTGTGKTAAFGLPI 61 Query: 65 LQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 ++ K Q LVL PTRELA+QVA+ + R + V+ +YGGQ +QL+AL+ Sbjct: 62 IETAVENAKRVQALVLTPTRELAIQVADEINSLKGKKR-IRVLPVYGGQAIHMQLKALKS 120 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 G +VVGTPGR++DHLKRGTL L +L VLDEADEM MGF++DV I+ +T Sbjct: 121 GVDVVVGTPGRIMDHLKRGTLHLDELDFFVLDEADEMCNMGFVDDVREILKSANTDRRTL 180 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 LFSATMP + RI + FM + + + +++ P Q + V + EAL R ++AE Sbjct: 181 LFSATMPHEVMRIAKEFMGDYELITVKAEKNDIPLTKQVFHEVADSDRFEALCRVVDAEP 240 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 ++F RT+ VA L GY + ++GD++QA RE+ L R K + IL+ATDV Sbjct: 241 DFYGLVFTRTRADADRVASRLTERGYPAEPIHGDLSQARREEILGRFKKRLVTILVATDV 300 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 AARG+DV ++ VVN+ +P D +++VHR GRTGRAG+ G A+ + E R L I ++ Sbjct: 301 AARGIDVPDLTHVVNFALPQDPQTFVHRTGRTGRAGKEGVAISLIAPSEFRRLMFITKSS 360 Query: 365 KLTIPEVELPNAELL----GKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELD 420 + I + +LP + R ++ +Q++ + L R LL +P Sbjct: 361 GIDITKAKLPCIHDVIYSKKSRMVDGLDGIIQEEAHTPYLPMARDLLEGREP-------- 412 Query: 421 LETLAAALLKMAQGE 435 E + AALLK A G+ Sbjct: 413 -EDVVAALLKHAFGD 426 >UniRef50_B1V1Y2 ATP-dependent RNA helicase DbpA n=2 Tax=Clostridium RepID=B1V1Y2_CLOPE Length = 453 Score = 301 bits (770), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 156/386 (40%), Positives = 237/386 (61%), Gaps = 27/386 (6%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F +L L I++ALN+LGY+ PS +Q IP LL G D++ +QTGSGKTA+F +P+ + Sbjct: 3 FNELNLSEDIIKALNNLGYKNPSEVQEASIPKLLKGEDIIVKSQTGSGKTASFGIPVCEK 62 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 ++ E K Q LVL PTRELA+QV + +++ + ++ V A++G Q ++ Q+R L+Q Sbjct: 63 INIEEKKVQCLVLTPTRELAIQVKDELSNIGR-IKKVRCAAIFGKQPFNEQIRELKQRVH 121 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 IVVGTPGR+ DH++RGTLDLS+++ +V+DEAD+ML MGFI+ ++ I+ ++ TALFS Sbjct: 122 IVVGTPGRVFDHMERGTLDLSEVNYVVIDEADKMLSMGFIDQIKDILGELRLNKTTALFS 181 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 AT + I I +M+ P + ++S V R I +S + Sbjct: 182 ATFSKEIEEICEEYMRNPMLLEVKSKVFNRDRIEESAIEIE------------------- 222 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 KN V + L+ G L+GDM Q R + +E +D +L+ TD+AAR Sbjct: 223 ------EKNKVKSVYKMLKDEGITCNELHGDMEQKKRIEVMENFRDKHFKVLVCTDIAAR 276 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 G+ V+ I LV+NY++PM++ESYVHRIGRTGRAGR G+A+ FV + E++ L N+E + Sbjct: 277 GIHVDSIELVINYEVPMETESYVHRIGRTGRAGREGKAITFVNHYEKKYLENVEEYIGYE 336 Query: 368 IPEVELP-NAELLGKRRLEKFAAKVQ 392 I + LP + E+ R++ K + KVQ Sbjct: 337 IRKASLPSDDEVKAGRKIFKESQKVQ 362 >UniRef50_Q7UJ92 Putative ATP-dependent RNA helicase rhlE n=1 Tax=Rhodopirellula baltica RepID=Q7UJ92_RHOBA Length = 485 Score = 301 bits (770), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 165/378 (43%), Positives = 226/378 (59%), Gaps = 17/378 (4%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F DLGL P+L+ L GYE P+PIQA+ IP +L+G DVLG AQTG+GKTAAF+LP+LQ Sbjct: 4 FEDLGLTGPLLQGLEQAGYETPTPIQAQSIPEILDGNDVLGAAQTGTGKTAAFALPILQI 63 Query: 68 L---DPELKAPQ-------------ILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYG 111 + D E + P LVL+PTREL+ Q+ + K R + ++G Sbjct: 64 MWEDDQERREPSKRRGGRPGRRPIRTLVLSPTRELSAQIEANFRIYGKKTR-LRSTVIFG 122 Query: 112 GQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVE 171 G + Q+R L+ G +V TPGRLLD + +G +DL + LVLDEAD ML MGF+ DV+ Sbjct: 123 GVNQNPQVRELQSGVDTLVATPGRLLDLVNQGFIDLKDVEILVLDEADHMLDMGFLPDVK 182 Query: 172 TIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMR 231 I+ +P Q LFSATMP IR++ + +P ++I T I QS V Sbjct: 183 RILKFLPRDRQNLLFSATMPGPIRKLADEILVDPVTIQIAPQKPTVERIEQSICFVAQAD 242 Query: 232 KNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERL 291 K L F+E + + ++F RTK+ VA L + G +AA++G+ QA R +TL + Sbjct: 243 KPRLLNHFIETKATGSTLVFTRTKHGADAVARRLVKAGVKAAAIHGNKTQANRVRTLNKF 302 Query: 292 KDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVEN 351 K+ LD+L+ATDVAARG+D++ I V+NYD P E+YVHRIGRTGRAGR G ++F Sbjct: 303 KNDELDVLVATDVAARGIDIDGIQTVINYDTPNTPEAYVHRIGRTGRAGREGETVMFCGG 362 Query: 352 RERRLLRNIERTMKLTIP 369 E + IER +KL IP Sbjct: 363 HETKFFIAIEREIKLQIP 380 >UniRef50_A8TFK3 DEAD/DEAH box helicase domain protein n=1 Tax=Methanococcus voltae A3 RepID=A8TFK3_METVO Length = 584 Score = 301 bits (770), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 170/414 (41%), Positives = 250/414 (60%), Gaps = 22/414 (5%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGR-DVLGMAQTGSGKTAAFSLPLLQ 66 F DL + I+E L++ G+ + + IQ + IP +L+ DV+G AQTG+GKT AF +P++Q Sbjct: 3 FRDLNISESIMERLDEKGFTEATQIQEKAIPIVLDTELDVVGQAQTGTGKTLAFGIPIIQ 62 Query: 67 NLDPEL--------KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQ 118 + ++ KA + ++L PTRELA+QV + + +K + + + +YGGQ + Q Sbjct: 63 KIQEKIEENGRKNKKAVKAIILTPTRELALQVHDEIDSVNKGNK-LRLCTVYGGQSIEKQ 121 Query: 119 LRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP 178 + LR G IV+GTPGR++DHL R TL L+++ LVLDEADEML +GFI+DVE IM++ Sbjct: 122 INKLRNGVDIVIGTPGRVIDHLGRRTLKLNEIDFLVLDEADEMLNLGFIDDVEEIMSKCK 181 Query: 179 EGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVR 238 E + LFSAT+P++I + M E + +R++S T Q Y+ V K E L R Sbjct: 182 EDCRKLLFSATLPKSIMELVELHMGEYETIRVKSKALTTELTEQIYYEVKEHDKFELLRR 241 Query: 239 FLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDI 298 ++ E ++F +TK ++ L Y+S AL+GDMNQ RE L R K ++DI Sbjct: 242 IIDKEPGFYGLVFCKTKADVDQLMRRLNDENYSSEALHGDMNQKQRELALSRFKSHKIDI 301 Query: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLR 358 +IATDVAARG+D+ ++ V+NYDIP + E+YVHRIGRTGRAG G A+ FVE RE R + Sbjct: 302 MIATDVAARGIDINELTHVINYDIPQNPEAYVHRIGRTGRAGNKGTAITFVEPREFRRFK 361 Query: 359 NIERTMKL-----TIPE----VELPNAELLGKRRLEKFAAKVQQQLESSDLDQY 403 I + K IP+ VEL ++GK K + + +S DL+ Y Sbjct: 362 YIMKISKSDAKKEKIPDVTEIVELTKTNIIGKL---KQLIQTENSEDSEDLENY 412 >UniRef50_A6LUG3 DEAD/DEAH box helicase domain protein n=33 Tax=Firmicutes RepID=A6LUG3_CLOB8 Length = 480 Score = 300 bits (769), Expect = 9e-80, Method: Compositional matrix adjust. Identities = 153/378 (40%), Positives = 234/378 (61%), Gaps = 1/378 (0%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F + IL+++ LGY+ PS +Q + IP +L +D++ +QTGSGKTAAF +PL + Sbjct: 5 FTKFKISDEILKSIEGLGYKNPSKVQEKVIPEILLNKDIIVKSQTGSGKTAAFGIPLCEK 64 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 +D PQILVL PTRELAVQV+E +T+ + R + V+++G + Q R L+Q Sbjct: 65 VDWNENIPQILVLTPTRELAVQVSEDITNIGRFKR-IKSVSIFGKEPISEQERKLKQKTH 123 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 +VVGTPGR+LDH+ RG+L+L+++ V+DEADEML MGFI VE I+ ++P+ T LFS Sbjct: 124 VVVGTPGRILDHIDRGSLNLAQIKYFVIDEADEMLNMGFIGQVEGIIRRLPKKKVTMLFS 183 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 AT+PE I+ + ++M +P ++ I + +I + + K E L L E + Sbjct: 184 ATIPEEIKVLCDKYMNKPVDISINNQKLINENIDHNLYYTNYEEKIEKLNDILITEKPET 243 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 +IF +TK V + L+ GY+ ++G M Q R ++ + G IL++TD+A+R Sbjct: 244 VVIFAKTKENVDTVFQWLKSKGYSVNRIHGGMLQKERLSIMDGFRLGDFRILVSTDLASR 303 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 G+DV+ I+ V+NYD+P++ E+YVHRIGRTGRAG G+A+ F N + +LL IE + Sbjct: 304 GIDVKGITHVINYDLPVEKEAYVHRIGRTGRAGEKGKAISFCVNEKDKLLSEIEEFIGFK 363 Query: 368 IPEVELPNAELLGKRRLE 385 IP LP ++ K + E Sbjct: 364 IPVYNLPEKIMVEKEKSE 381 >UniRef50_C5CU85 DEAD/DEAH box helicase domain protein n=10 Tax=Comamonadaceae RepID=C5CU85_VARPS Length = 601 Score = 300 bits (768), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 162/370 (43%), Positives = 229/370 (61%), Gaps = 9/370 (2%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F +L L IL+A+++ GY+ P+PIQA+ IP +L G D+LG AQTG+GKTAAF+LP+L Sbjct: 3 FDELKLAPAILKAVHEHGYDTPTPIQAQAIPAVLEGHDLLGGAQTGTGKTAAFTLPMLHK 62 Query: 68 LDPELKAPQ--------ILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119 L A LVL PTRELA QV E++ + K++ ++ ++GG + Q+ Sbjct: 63 LSTGASATNKFGGIGIRALVLTPTRELAAQVEESVRTYGKYLE-LDSTVIFGGVGMNPQI 121 Query: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179 L++G I+V TPGRLLD ++G LDLS++ L+LDEAD ML MGFI DV+ I+A +P+ Sbjct: 122 SKLKKGVDILVATPGRLLDLQQQGMLDLSQVQMLILDEADRMLDMGFIHDVKKILALVPK 181 Query: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239 Q+ LFSAT + IR + +K PQ +++ TT I+Q V +K L Sbjct: 182 EKQSLLFSATFSDEIRDLAATLLKNPQSIQVTPRNTTVQRITQVIHPVGRGKKKALLAHI 241 Query: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299 + + ++F RTK VAE L +NG + AL+G+ +Q+ R Q L K G + L Sbjct: 242 INENKWSQVLVFTRTKFGANSVAEFLTKNGIEAMALHGNKSQSARTQALAGFKSGDIRAL 301 Query: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359 +ATD+AARG+D++ + VVNY+IP SE YVHRIGRTGRAG +G A+ FV E ++ Sbjct: 302 VATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGSSGEAVSFVCMDEEGFMQE 361 Query: 360 IERTMKLTIP 369 IER K TIP Sbjct: 362 IERFTKQTIP 371 >UniRef50_UPI00016C0D94 ATP-dependent RNA helicase n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0D94 Length = 472 Score = 300 bits (768), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 171/487 (35%), Positives = 272/487 (55%), Gaps = 28/487 (5%) Query: 79 VLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLD 138 +L PTRELAVQ+A M H + + ++A+YGG+ + QL LR+ PQIVVGTPGR++D Sbjct: 1 MLCPTRELAVQIATEMKKICAHKKDIGILAVYGGESIEKQLAGLRRRPQIVVGTPGRVMD 60 Query: 139 HLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRIT 198 H++R TL L L LVLDEADEML MGF ED++TI+ IPE Q LFSAT+P+AI I Sbjct: 61 HMRRKTLKLGALKMLVLDEADEMLNMGFREDIDTILESIPENRQFLLFSATLPKAIMEIA 120 Query: 199 RRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNAT 258 ++ ++ T ISQ Y V +K+E L R +++ +F ++F TK Sbjct: 121 NKYQTNAVKINTTKKQVTVKTISQHYLDVNEKKKSEVLARLIDSNNFKLMLVFCNTKKRV 180 Query: 259 LEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVV 318 ++ + L GY + AL+GDM Q R+ + + + G +DILIATDVAARG+D++ + V Sbjct: 181 DDLCKDLMSRGYKAEALHGDMKQIHRDSVMNKFRRGIVDILIATDVAARGIDIDDVDAVF 240 Query: 319 NYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAEL 378 NYD+P+D E YVHRIGRTGRA R G + FV +E LR IER I ++ +P + Sbjct: 241 NYDLPIDDEYYVHRIGRTGRANRKGTSYSFVCGKEIYKLRQIERYTNSKITKITIPTMDD 300 Query: 379 LGKRRLEKFAAKVQQQLESSDLDQYRALLSKI--QPTAEGEELDLET--LAAALLKMAQG 434 + ++ +++++++ + A +++I + AE EELD+ + +AAA L +A Sbjct: 301 IKGNKVNSILDEIKEEIKEGKITTNLAFITQIAQELNAECEELDITSTEVAAAFLNVAMK 360 Query: 435 ERTLIVPPDAPMRPKREFRDRDDRGPRD--RNDRGPRGDREDRPRRERRDVGDMQLYRIE 492 + +V P R K + +D+ N++G + +L+ I Sbjct: 361 K---MVTGSNP-RVKLADLEHEDKKTTTYGYNEKGYK-----------------RLF-IN 398 Query: 493 VGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILN 552 +G D +E +V +A+ +S + IG I + S +E+P E++ + + Sbjct: 399 LGNKDKLESSQLVKFVASNTSVSGKEIGKIDMLDKFSFLEVPAKYVDELIAVLPKKKFKG 458 Query: 553 KPMNMQL 559 + +N+++ Sbjct: 459 RKVNIEV 465 >UniRef50_C2ME86 ATP-dependent RNA helicase, dead/deah box family n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2ME86_9PORP Length = 553 Score = 300 bits (768), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 189/529 (35%), Positives = 292/529 (55%), Gaps = 9/529 (1%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGR-DVLGMAQTGSGKTAAFSLPLL 65 TF L L +L A DLG+ +P P+Q E IP+L R D++ +++TGSGKTAA+ LPLL Sbjct: 2 TFDTLDLSPELLRATTDLGFSEPMPVQQEVIPYLSTHRGDLIALSKTGSGKTAAYGLPLL 61 Query: 66 QNL-DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 + + + AP L+L PTRELA+QV + +K+ ++ALYGG + Q+R L + Sbjct: 62 ERIIQAKGSAPCGLILTPTRELAIQVQSDLVALAKYTSVRQILALYGGASIEEQIRQLAK 121 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 G I+V TPGRL D ++R + L K+S +VLDEAD ML MGF D++ I+ +P+ + Sbjct: 122 GYHIIVATPGRLCDLIRRKAVKLRKVSVVVLDEADVMLDMGFQRDLQEILQAVPQQVEHW 181 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 LFSATM +R I ++ + EV+I + DI Y V K AL R ++ Sbjct: 182 LFSATMSREVREIADNYISDAHEVQIGALNKANADIKHLYVAVPARHKYAALKRVVDYYP 241 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 IIF RT+ T E+AE L R+GYN+ AL+GD++QA R+ + R + L +L+ATDV Sbjct: 242 NIYGIIFCRTRAETKEIAEWLIRDGYNADALHGDLSQAQRDMVMNRFRIRNLQLLVATDV 301 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 AARGLDV+ ++ V++Y +P D +SY HR GRT RAG+ G ++ R+ + +R IE+ Sbjct: 302 AARGLDVDDVTHVLHYGLPADPDSYTHRSGRTARAGKTGLSIAICHLRDSKQIRIIEQHA 361 Query: 365 KLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETL 424 + I + LP+ + + K++L A +++ + QY LL+ I + L E + Sbjct: 362 GIRIESMPLPSGQEICKKQLFALATRIEYADSNEHGTQYDELLNAI--VQKLAWLPPEEI 419 Query: 425 AAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVG 484 +L + + +R + + P +E + P+ R P R+ +R R D+ Sbjct: 420 IRRVLTL-EADRIMRYYANTPDLSAQELATEE---PKYRTKGSPEEHRKAPKKRSRTDLP 475 Query: 485 DMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIEL 533 M RI +G+ D + ++ I N IG I L S+S E+ Sbjct: 476 PMTSLRINLGKRDKLYPNRLLELI-NRTLPYKITIGKIDLSPSYSYFEV 523 >UniRef50_C6WM51 DEAD/DEAH box helicase domain protein n=83 Tax=Actinobacteria (class) RepID=C6WM51_ACTMD Length = 609 Score = 300 bits (768), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 165/352 (46%), Positives = 227/352 (64%), Gaps = 8/352 (2%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 TF +LG++ I+ AL + G E+ IQ +P L G DV+G A+TG+GKT F +PLLQ Sbjct: 53 TFTELGVREEIVRALGEAGIERAFAIQELTLPLALAGEDVIGQARTGTGKTLGFGIPLLQ 112 Query: 67 N-LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 + P PQ LV+ PTREL +QV +TD SKHM V V+A+YGG+ Y+ Q+ ALR+G Sbjct: 113 RVITPGDGTPQALVVVPTRELCLQVTHDLTDASKHM-DVRVLAIYGGRPYEPQIAALRKG 171 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 +VVGTPGRLLD ++ L L K+ LVLDEADEML +GF+ D+E ++ +P+ QT L Sbjct: 172 VDVVVGTPGRLLDLAEQRHLVLGKVRSLVLDEADEMLDLGFLPDIERVLRMVPDERQTML 231 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQS----SVTTRPDISQSYWTVWGMRKNEALVRFLE 241 FSATMP I + R F+ +P VR + +V R + Q + + K E L R L+ Sbjct: 232 FSATMPGPIITLARTFLNQPTHVRAEENDAGAVHERTE--QFIYRAHALDKVELLARVLQ 289 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 A D ++IF RTK +VA+ + G+ AA++GD+ Q REQ L + G++D+L+A Sbjct: 290 ARDRGLSMIFTRTKRTAQKVADDMAERGFAVAAVHGDLGQGAREQALRAFRSGKIDVLVA 349 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRE 353 TDVAARG+DVE ++ VVNY P D ++YVHRIGRTGRAGR G A+ V+ E Sbjct: 350 TDVAARGIDVEGVTHVVNYQCPEDEKTYVHRIGRTGRAGRTGVAVTLVDWDE 401 >UniRef50_Q0K893 ATP-dependent RNA helicase n=129 Tax=Proteobacteria RepID=Q0K893_RALEH Length = 646 Score = 300 bits (767), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 167/381 (43%), Positives = 227/381 (59%), Gaps = 24/381 (6%) Query: 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 E+ FA LGL A IL AL++L Y P+P+QA+ IP L GRD+L +QTGSGKTAAF LP Sbjct: 57 ESGFATLGLDAAILRALSELNYNTPTPVQAQAIPAFLAGRDLLVSSQTGSGKTAAFMLPA 116 Query: 65 LQNLDPELKAPQ----------------------ILVLAPTRELAVQVAEAMTDFSKHMR 102 +Q + E+ APQ +LVL PTRELA+QV EA + +++R Sbjct: 117 IQRIS-EMPAPQRATEPAKRMKGKRPRPSPAQPALLVLTPTRELALQVTEAAAKYGRNLR 175 Query: 103 GVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEML 162 + ++ GG Y QL AL + P I+V TPGRLLDH+ G +DLS L LV DEAD ML Sbjct: 176 RIVCASILGGMPYPKQLAALAKMPDILVATPGRLLDHIDAGRIDLSALQMLVFDEADRML 235 Query: 163 RMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQ 222 MGF +D++ I+ P QT +FSAT+ I ++ R +++PQ + I ++ + I Q Sbjct: 236 DMGFADDIDAIVNATPATRQTLMFSATLDARIAQLASRQLRDPQRIEIAAARADQSHIEQ 295 Query: 223 SYWTVWGMRKNEALV-RFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQ 281 M E L+ L AI+F TK +AE L G+++ AL+GDM Q Sbjct: 296 RLHFTDDMSHKERLLDHLLRDATLKQAIVFTATKRDADSLAERLSDTGFSAGALHGDMTQ 355 Query: 282 ALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGR 341 R +TL L+ G L +L+ATDVAARG+DV I+ VVN+D+P +E YVHRIGRTGRAGR Sbjct: 356 GARNRTLTALRRGNLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGR 415 Query: 342 AGRALLFVENRERRLLRNIER 362 +G A+ V + + + IER Sbjct: 416 SGTAINLVNHNDMFQWKRIER 436 >UniRef50_A6NSW7 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NSW7_9BACE Length = 400 Score = 299 bits (766), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 156/365 (42%), Positives = 231/365 (63%), Gaps = 2/365 (0%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 +ADLGL A +++A++ GY + +P+QA IP+ + +DV+ A TG+GKT AF +P++ Sbjct: 12 VNYADLGLSAEVMKAIDKKGYVRATPVQAGAIPYFMEWKDVIAKAPTGTGKTFAFGIPMV 71 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 +++DPE A Q LVLAPTRELA+Q+ + + D + GV V LYGG + Q+ L++ Sbjct: 72 EHIDPESDAVQALVLAPTRELALQIQDELRDLCEFKEGVRSVCLYGGAPIEKQITTLKKH 131 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 PQIVV TPGRL+DH+KR T+ L K+ +VLDEAD ML MGFI DV I+ QI L Sbjct: 132 PQIVVATPGRLMDHMKRRTVKLDKVETVVLDEADRMLDMGFIHDVTRILDQIKSRKNLGL 191 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM-RKNEALVRFLEAED 244 FSAT+ + I+ + ++P E+ ++ +PDI Q + G K E +V L Sbjct: 192 FSATISREVMDISWVYQRDPVEIVVRPDEENKPDIQQYRIDLEGRGDKLETMVALLTHGG 251 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 ++ AI F TKN T ++ L+ G + A++GD+ Q +RE+TL+ ++G++ +L+ATDV Sbjct: 252 YERAIAFCNTKNMTDRLSGLLQMRGITAQAIHGDIQQRIREKTLQAFREGKMRVLVATDV 311 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRAL-LFVENRERRLLRNIERT 363 AARGLD++ + +V NYD+P + E Y+HRIGRTGRA R G A L V E+ + I + Sbjct: 312 AARGLDIDDVDVVFNYDVPDEIEYYIHRIGRTGRAKRHGVAYSLVVGITEQMKMEQIAKN 371 Query: 364 MKLTI 368 K I Sbjct: 372 TKADI 376 >UniRef50_B5EAF1 DEAD/DEAH box helicase domain protein n=3 Tax=Deltaproteobacteria RepID=B5EAF1_GEOBB Length = 471 Score = 299 bits (766), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 153/362 (42%), Positives = 225/362 (62%), Gaps = 3/362 (0%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F L + + +GY P+PIQ + IP +++G+DVLG+AQTG+GKTAAF LP+L Sbjct: 3 FKQFNLHPKVQAGIEAMGYVTPTPIQLQAIPSVISGQDVLGLAQTGTGKTAAFGLPMLHR 62 Query: 68 LDPELKAP-QILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 L E + + LVLAPTRELA Q+ +A+ K R + V +YGG + Q++ L++G Sbjct: 63 LVQEERGHVRGLVLAPTRELAEQINDALNGMGKQTR-LRSVTVYGGVNINTQIKKLKEGA 121 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 +IVV PGRLLDH+ +GT+DLS++ LVLDEAD+M MGF+ DV I+ +P Q +F Sbjct: 122 EIVVACPGRLLDHISQGTIDLSRVEILVLDEADQMFDMGFLPDVRKILRALPGKRQNLMF 181 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SATMP+ IRR+ ++ P V++ S +S + + V K L L+ D + Sbjct: 182 SATMPDDIRRLAHEILRNPVTVQV-SRTAPAATVSHALYPVGQHLKTPLLFEMLKHTDTE 240 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 + +IF +TK+ V E LE+ GY + +L G+++Q R+ L+ +DG I++ATD+AA Sbjct: 241 SVLIFTKTKHRAKRVGEQLEKAGYKATSLQGNLSQNRRQAALDGFRDGTFQIMVATDIAA 300 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RG+DV IS V+NYDIP E+Y HRIGRTGRA + G A V + + +R+IE+ + Sbjct: 301 RGIDVSLISHVINYDIPDTPEAYTHRIGRTGRAAKTGDAFTMVTSEDDYTVRSIEKVLGT 360 Query: 367 TI 368 I Sbjct: 361 KI 362 >UniRef50_A9GRX1 DeaD2 protein n=5 Tax=Bacteria RepID=A9GRX1_SORC5 Length = 478 Score = 299 bits (766), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 165/376 (43%), Positives = 226/376 (60%), Gaps = 5/376 (1%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 FADL L P+L A+ GY P+PIQ + IP +L G D+LG AQTG+GKTAAF+LP+LQ Sbjct: 3 FADLKLIEPLLRAIEAEGYSAPTPIQQQAIPPILEGNDLLGCAQTGTGKTAAFALPILQR 62 Query: 68 LD----PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 L P ++LVL PTRELA QVAE+ T + K++ G+ ++GG Q+ ALR Sbjct: 63 LAQSGGPRQGGLRVLVLTPTRELAAQVAESFTTYGKNL-GLRTAVVFGGVGQRPQMEALR 121 Query: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183 +G ++V TPGRLLD +G +L LVLDEAD ML MGFI D+ ++A +PE QT Sbjct: 122 RGVDVLVATPGRLLDLCSQGIAPFGRLDTLVLDEADRMLDMGFIHDIRRVLAMLPERRQT 181 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAE 243 LFSATMP I ++ ++ P V + TT +I Q V K L L+ Sbjct: 182 LLFSATMPPDILKLANSILRSPVRVEVARIATTAENIDQRVVFVERSDKRAMLEHVLKDP 241 Query: 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 303 AI+F RTK+ V + L R + A++G+ +Q RE+ L K G +L+ATD Sbjct: 242 ALRRAIVFTRTKHGANRVVQQLSRARIEAVAIHGNKSQGARERALASFKQGTTSVLVATD 301 Query: 304 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 363 +AARG+D++ IS V+NYD+P ESYVHRIGRT RAG +G AL F ++ ER L +IER Sbjct: 302 IAARGIDIDDISHVINYDLPNIPESYVHRIGRTARAGASGVALSFCDSEERAYLADIERL 361 Query: 364 MKLTIPEVELPNAELL 379 ++ +P + P + Sbjct: 362 IQKRLPLLADPGVPVF 377 >UniRef50_A7IK90 DEAD/DEAH box helicase domain protein n=36 Tax=Alphaproteobacteria RepID=A7IK90_XANP2 Length = 559 Score = 299 bits (765), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 155/369 (42%), Positives = 231/369 (62%), Gaps = 6/369 (1%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 T+F++LGL PI+ AL + + P+PIQAE IP +L GRD++G+AQTG+GKTAAF+LP+L Sbjct: 37 TSFSNLGLAEPIVRALTEAQHVTPTPIQAEAIPQILAGRDLIGIAQTGTGKTAAFALPIL 96 Query: 66 QNL-----DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 L PE K+ + LVL+PTREL+ Q+ E F +H ++V GG Q+R Sbjct: 97 DRLVRHPHRPEPKSVRALVLSPTRELSGQIVENFEKFGRHA-NISVSLAIGGVPMGRQIR 155 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 AL +G ++V TPGRL+D ++ + L ++ LVLDEAD+ML MGF+ + I+ ++P Sbjct: 156 ALSRGVDVLVATPGRLIDLVENHAVKLDQVEVLVLDEADQMLDMGFVHAIRAIVRRLPHK 215 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 + FSATMP AI + +++P V + T + Q V K + L L Sbjct: 216 RHSLFFSATMPHAIAELAGSMLRDPVRVAVTPVAKTADRVEQRVILVDKANKGQLLAEVL 275 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 ED D A++F RTK+ +V L + G + A++G+ +Q R++ L ++G++ LI Sbjct: 276 STEDIDRALVFSRTKHGADKVVRVLAKAGIAAEAIHGNKSQNQRDRVLAAFREGKIRTLI 335 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATD+AARG+DV +S V+N+D+P ESYVHRIGRT RAGR G A+ F ++ ER LR+I Sbjct: 336 ATDIAARGIDVTGVSHVINFDLPNVPESYVHRIGRTARAGREGIAISFCDHEERAFLRSI 395 Query: 361 ERTMKLTIP 369 E+ +K+ +P Sbjct: 396 EKLIKMQLP 404 >UniRef50_B1CAG5 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1CAG5_9FIRM Length = 510 Score = 298 bits (764), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 153/373 (41%), Positives = 231/373 (61%), Gaps = 4/373 (1%) Query: 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 +TTF++L + I L+++G+ P+ IQ + IP + +G DV+G +QTG+GKT AF++P Sbjct: 3 KTTFSELEINLDINRVLDEMGFTNPTDIQNKAIPAIRSGVDVIGKSQTGTGKTIAFAIPA 62 Query: 65 LQNLDPELKAP--QILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 ++ +D E + P Q+L++ PTRELA Q + +K+M + VV +YGG + Q+ L Sbjct: 63 IEKIDIEQEKPTAQVLIICPTRELAQQGYAEIKKLTKYMPEIKVVDIYGGVSMERQISKL 122 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 ++ IV+GTPGR+ DHLKR TL L + +VLDEADEML MGF ED++TI+ P+ Q Sbjct: 123 KKA-HIVIGTPGRIKDHLKRRTLKLQNIKMVVLDEADEMLSMGFKEDIDTILKTAPDTRQ 181 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 T LFSATMP AI I F+K P ++I T I+Q+Y V +K E L L Sbjct: 182 TVLFSATMPPAIMNIIDTFLKNPLLIQIDKEQVTVNKIAQNYIDVPKGKKKEVLNLLLHY 241 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 IIF TK ++ + L +NG+++ L+GD+ Q R + + K+ + IL+AT Sbjct: 242 YGSKLTIIFCNTKRMVDDLTKFLRKNGFSAECLHGDIRQNERSRVMSNFKNAKTPILVAT 301 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRL-LRNIE 361 DVAARG+DV+ + V+NYDIP +SE Y+HRIGRT R G+ G ++ NR++ L+ I Sbjct: 302 DVAARGIDVKDVEYVINYDIPQNSEYYIHRIGRTARGGKTGTSITMTNNRKQVTDLKMIL 361 Query: 362 RTMKLTIPEVELP 374 + I ++++P Sbjct: 362 KETNSKIKKLDIP 374 >UniRef50_C7LPU2 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LPU2_DESBD Length = 741 Score = 298 bits (764), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 158/367 (43%), Positives = 226/367 (61%), Gaps = 3/367 (0%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F+ L + A L + + P+Q + IP++L G+DV+ +QTGSGKT AF LP+L Sbjct: 25 FSMADLPQTLQAAATRLNWAELMPVQVQTIPYMLGGQDVMVQSQTGSGKTGAFLLPILDR 84 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 ++ L APQ LVL PTRELAVQV + + G+ +++YGG Y Q++ L G Q Sbjct: 85 IETGLGAPQALVLVPTRELAVQVTRDAEELGREA-GIKPLSIYGGVGYKGQIQGLEDGAQ 143 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 +++GTPGR+LDHL +G L+L +L LV DEAD ML MGF D++ + +P G Q+A+FS Sbjct: 144 LIIGTPGRILDHLLKGNLNLDRLKILVFDEADRMLSMGFYPDMKQLQRYLPRGLQSAMFS 203 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 AT P ++R+ ++F+K+P V + S D+ + V M+K+ LV+ +E E+ + Sbjct: 204 ATYPGHVKRLAQQFLKDPVFVSLSQSQVHVSDVLHVVYKVPAMQKSRILVKIIEQENPAS 263 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 AIIF TK V+ L R GY+ ++ D+ QA RE+ LE+L+ +L L+ATDVAAR Sbjct: 264 AIIFCNTKADVHFVSTVLRRFGYDVGEISADLTQAAREEVLEKLRLNKLKFLVATDVAAR 323 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 G+D+ +S V Y P D E+YVHR GRTGRAG AG A+ FV E L I + K + Sbjct: 324 GIDIHELSHVFQYQPPQDHEAYVHRTGRTGRAGAAGVAISFVSGMEEIELEQIAK--KFS 381 Query: 368 IPEVELP 374 IP VE P Sbjct: 382 IPMVEQP 388 >UniRef50_Q14NT1 Putative atp-dependent rna helicase protein n=1 Tax=Spiroplasma citri RepID=Q14NT1_SPICI Length = 443 Score = 298 bits (762), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 145/346 (41%), Positives = 209/346 (60%), Gaps = 1/346 (0%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F L L + + +GY + IQ + IP LN +D++G + TG+GKT AF +P+LQN Sbjct: 3 FNTLNLYPALQRMIAKMGYTNLTEIQEKAIPVALNSQDIIGKSHTGTGKTVAFIVPILQN 62 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 L+ LK PQ ++L PT ELA Q+ E + F+ ++ GVN + GG Q+ ALR+ Sbjct: 63 LNTHLKQPQAIILCPTHELASQIIEQVRKFATYLEGVNATLICGGSHIQRQIYALRKS-N 121 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 I+VGTPGR+ DH+ R TL L K+ +VLDEADEML+MGF D++ + P +QT LFS Sbjct: 122 IIVGTPGRIADHINRKTLRLDKIKTIVLDEADEMLKMGFKTDLDKVFQNAPNKYQTLLFS 181 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 ATMP+ + I + P E+ + +V + +ISQ Y K + L+ + Sbjct: 182 ATMPKQVLEIANNYQTNPVEIVVTKNVIEQNNISQHYVNAISYHKEDVLIALYKHLQPKR 241 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 +IIF TK T ++AE L NG +NGD ++ R Q + +DG++ +++ATDVAAR Sbjct: 242 SIIFSNTKVFTNKIAEMLTNNGIPCCIINGDKSRYERGQAMRLFRDGKVRVMVATDVAAR 301 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRE 353 G+D++ I V+NYDIP + ESY+HRIGRT RAG G A+ V NR Sbjct: 302 GIDIDNIDYVINYDIPTERESYIHRIGRTARAGATGVAISIVSNRN 347 >UniRef50_Q2SZW4 ATP-dependent RNA helicase RhlE n=104 Tax=Proteobacteria RepID=Q2SZW4_BURTA Length = 571 Score = 297 bits (761), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 159/382 (41%), Positives = 238/382 (62%), Gaps = 13/382 (3%) Query: 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 + TF GL A IL A+ + GY P+PIQA IP +L+GRDV+G AQTG+GKTA+FSLP+ Sbjct: 100 DATFDQFGLAAEILRAIAEQGYTTPTPIQANAIPVVLSGRDVMGAAQTGTGKTASFSLPI 159 Query: 65 LQNLDPELKAP--------QILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYD 116 +Q L P+ + L+L PTRELA QVA + ++KH + V ++GG + Sbjct: 160 IQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAV-VFGGVDMN 218 Query: 117 VQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQ 176 Q+ LR+G +I++ TPGRLLDH+++ T +L ++ LVLDEAD ML MGF+ D++ I+ Sbjct: 219 PQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNL 278 Query: 177 IPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEAL 236 +P+ QT LFSAT I+++ +++ PQ + + S ++Q + V K A+ Sbjct: 279 LPKERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAV 338 Query: 237 VRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRL 296 V+ + I+F +K +A +ER+G +AA++GD +Q+ R Q L+ K G + Sbjct: 339 VKLIRDRSLKQVIVFCNSKIGASRLARQIERDGIVAAAIHGDRSQSERMQALDAFKRGEI 398 Query: 297 DILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRL 356 + L+ATDVAARGLD+ + V+N+D+P ++E YVHRIGRTGRAG +G AL ER+ Sbjct: 399 EALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 458 Query: 357 LRNIE----RTMKLTIPEVELP 374 L +IE RT+ L E++LP Sbjct: 459 LADIEKLIKRTLSLETLELDLP 480 >UniRef50_Q28T45 DEAD/DEAH box helicase-like protein n=18 Tax=Alphaproteobacteria RepID=Q28T45_JANSC Length = 644 Score = 297 bits (761), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 163/381 (42%), Positives = 234/381 (61%), Gaps = 13/381 (3%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 TTFADL L + +A+ + GYE P+PIQA IP L GRDVLG+AQTG+GKTA+F+LP++ Sbjct: 11 TTFADLDLNPKVQKAIVEAGYESPTPIQAGAIPPALAGRDVLGIAQTGTGKTASFTLPMI 70 Query: 66 QNLD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 L + P+ LVL PTRELA QVAE ++KH++ + L GG + Q +A+ Sbjct: 71 TMLARGRARARMPRSLVLCPTRELAAQVAENFDIYAKHVKLTKAL-LIGGVSFKEQEQAI 129 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 +G +++ TPGRLLDH +RG L L+ + +V+DEAD ML MGFI D+E I +P Q Sbjct: 130 DKGVDVLIATPGRLLDHFERGKLILNDVKVMVVDEADRMLDMGFIPDIERIFGLVPFTRQ 189 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKN-EALVR--- 238 T FSATM I RIT F+ P+++ ++ TT I Q R++ +A ++ Sbjct: 190 TLFFSATMAPEIERITNTFLSNPEKIEVERQSTTSATIEQRLIEFKAPRRDAQAKMKRDM 249 Query: 239 -----FLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKD 293 E + F AIIF K VA++L+++ N+ ++GD++Q+ R +TL +D Sbjct: 250 LRAAITAEGDAFRNAIIFCNRKVDVDIVAKSLKKHNLNAEPIHGDLDQSHRMRTLAGFRD 309 Query: 294 GRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRE 353 G + +L+A+DVAARGLD+ +S V+NYD+P +E YVHRIGRTGRAG+ G A+ + Sbjct: 310 GSITLLVASDVAARGLDIPNVSHVINYDVPSHAEDYVHRIGRTGRAGKTGVAITLCVPSD 369 Query: 354 RRLLRNIERTMKLTIPEVELP 374 + L IE +K IP E P Sbjct: 370 EKYLGAIEGLIKQPIPRAEAP 390 >UniRef50_B5ZGC1 DEAD/DEAH box helicase domain protein n=3 Tax=Acetobacteraceae RepID=B5ZGC1_GLUDA Length = 427 Score = 297 bits (761), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 165/361 (45%), Positives = 225/361 (62%), Gaps = 6/361 (1%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 TFADL L +L AL + GY P+PIQA+ IP LL GRD+LGMAQTG+GKTAAF+LPLL Sbjct: 4 TFADLSLAPTLLRALAEEGYASPTPIQAQSIPMLLEGRDLLGMAQTGTGKTAAFALPLLH 63 Query: 67 NLDPELK-APQ----ILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 L + AP+ +LVLAPTREL Q+A+ F +H + +V ++GG Q+ A Sbjct: 64 RLAMAPRPAPKGGARVLVLAPTRELVSQIADGFESFGRH-QPPSVTTIFGGVSQVHQVNA 122 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 L+ G I+V PGRLLD + +G DLS+L LVLDEAD+ML MGF +E I+A +P+ Sbjct: 123 LKAGVDIIVAAPGRLLDLIDQGLCDLSQLEALVLDEADQMLDMGFARPIERIVATLPKDR 182 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 T LFSATMP++I + +++P +V I TT I QS V K AL+ L Sbjct: 183 HTVLFSATMPKSIATLAESLLRDPAKVEIAPPSTTVDRIEQSVMFVDAADKKAALLAMLR 242 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 A++F KN EV + G + AL+G+ +Q RE+ L+ + G +L+A Sbjct: 243 TPGIGQAVVFTLQKNIANEVCAFITEAGITAEALHGNKSQGQRERALDAFRSGTAQVLVA 302 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 TD+AARG+DV+ ++ V N+D+P ESYVHRIGRTGRAGR G A+ + +R LR++E Sbjct: 303 TDIAARGIDVDTVTHVFNHDLPSLPESYVHRIGRTGRAGRNGFAITLCDAEQRAWLRDVE 362 Query: 362 R 362 R Sbjct: 363 R 363 >UniRef50_C7JBN9 DNA/RNA helicase n=19 Tax=cellular organisms RepID=C7JBN9_ACEP3 Length = 636 Score = 297 bits (761), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 164/372 (44%), Positives = 235/372 (63%), Gaps = 8/372 (2%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 TFADL L PIL A++D+GY P+PIQ + IP +L RDV+G+AQTG+GKTA+F+LP+L+ Sbjct: 156 TFADLELSEPILRAISDMGYTHPTPIQEQAIPAILMARDVMGVAQTGTGKTASFTLPMLE 215 Query: 67 NL-DPELKA--PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 L D +A P+ L+L PTRELA+QVAE ++ K+++ +N L GG+ Q L Sbjct: 216 ILSDSRARARMPRSLILEPTRELALQVAENFVNYGKYLK-LNHALLIGGESMADQKEVLN 274 Query: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183 +G +++ TPGRLLD +RG L L+ LV+DEAD ML MGFI D+E I+ +P QT Sbjct: 275 RGVDVLIATPGRLLDLFERGGLMLNHTGILVIDEADRMLDMGFIPDIEKIVGLLPPNRQT 334 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRI--QSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 LFSATM IR++ F+ P+E+ + QSSV T I+ V K E L + L+ Sbjct: 335 LLFSATMAPTIRKLADAFLHSPKEITVARQSSVAT--TITTGIVVVDEYSKRETLRQLLK 392 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 AI+F K + ++L ++G+++AAL+GD+ Q++R TLE+ K+ L +L+ Sbjct: 393 DPALQNAIVFCNRKRDVDILTKSLVKHGFSAAALHGDLPQSVRFSTLEKFKNDELKVLVC 452 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 +DVAARG+D+ +S V N+D+P +E YVHRIGRTGRAGR G A ++ L IE Sbjct: 453 SDVAARGIDIGGLSHVFNFDLPFHAEDYVHRIGRTGRAGREGHAYSIATPYDKALAEAIE 512 Query: 362 RTMKLTIPEVEL 373 + IP + L Sbjct: 513 KLTGKEIPRMAL 524 >UniRef50_A0JYP4 DEAD/DEAH box helicase domain protein n=14 Tax=Actinomycetales RepID=A0JYP4_ARTS2 Length = 585 Score = 297 bits (760), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 161/379 (42%), Positives = 234/379 (61%), Gaps = 14/379 (3%) Query: 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 E +FAD ++A I+E+L D G P PIQA +P L G D++G A+TG+GKT F +P Sbjct: 36 EKSFADYNVRADIVESLADAGITHPFPIQAMTLPVALAGHDIIGQAKTGTGKTLGFGIPA 95 Query: 65 LQNL----DPELK------APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQR 114 LQ + DP APQ LV+ PTRELAVQVA+ + + ++ R + +YGG+ Sbjct: 96 LQRVVGRDDPGFDKLAVPGAPQALVIVPTRELAVQVAKDLENAARK-RNARIATIYGGRA 154 Query: 115 YDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIM 174 Y+ Q+ +L++G +IVVGTPGRL+D K+ L L + ++LDEADEML +GF+ DVET++ Sbjct: 155 YEPQVDSLQKGVEIVVGTPGRLIDLYKQKHLSLKNVKIVILDEADEMLDLGFLPDVETLI 214 Query: 175 AQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRI---QSSVTTRPDISQSYWTVWGMR 231 A P QT LFSATMP + + RR+M +P +R T+ DI Q + M Sbjct: 215 AGTPAVRQTLLFSATMPGPVIAMARRYMTQPTHIRAADPDDEGLTKRDIRQLIYRAHSMD 274 Query: 232 KNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERL 291 K E + R L+A IIF +TK +VAE L G+ +AA++GD+ Q REQ L Sbjct: 275 KIEVVARILQARGRGRTIIFTKTKRTAAKVAEELVDRGFAAAAIHGDLGQGAREQALRAF 334 Query: 292 KDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVEN 351 ++ ++D+L+ATDVAARG+DV+ ++ V+NY D + Y+HR+GRTGRAG G A+ FV+ Sbjct: 335 RNNKVDVLVATDVAARGIDVDDVTHVINYQCVEDEKIYLHRVGRTGRAGNKGTAVTFVDW 394 Query: 352 RERRLLRNIERTMKLTIPE 370 + I + + L++PE Sbjct: 395 DDMPRWGLINKALGLSVPE 413 >UniRef50_C5CB97 DNA/RNA helicase, superfamily II n=23 Tax=Bacteria RepID=C5CB97_MICLC Length = 611 Score = 297 bits (760), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 167/382 (43%), Positives = 236/382 (61%), Gaps = 17/382 (4%) Query: 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 E TFAD G+ I+EAL G P PIQA +P L G D++G A+TG+GKT F +P Sbjct: 36 EQTFADFGVHPAIVEALEAKGIVHPFPIQAMTLPVALGGHDIIGQAKTGTGKTLGFGIPA 95 Query: 65 LQN-LDP--------ELK----APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYG 111 LQ + P E K APQ L++APTRELAVQVA +T + R + + +YG Sbjct: 96 LQRAIGPGEPGWDGLEAKGTAGAPQALIVAPTRELAVQVAGDLTAAAAR-RPLRIATIYG 154 Query: 112 GQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVE 171 G+ Y+ Q+ L++G +IVVGTPGRL+D +++ L L ++ +VLDEADEML +GF+ DVE Sbjct: 155 GRAYEPQIEELQRGVEIVVGTPGRLIDLMRQRHLRLDLVNTVVLDEADEMLDLGFLPDVE 214 Query: 172 TIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRI---QSSVTTRPDISQSYWTVW 228 T++A +P QT LFSATMP + + RR+M +P +R + T+ DI Q + Sbjct: 215 TLLAAVPAVRQTMLFSATMPGPVVAMARRYMTQPTHIRAADPEDEGLTKKDIRQLVYRAH 274 Query: 229 GMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTL 288 M K+E + R L+AE IIF RTK VA+ L G+ + AL+GD+ Q REQ L Sbjct: 275 HMDKDELVARALQAEGRGRTIIFTRTKRTAARVADELTARGFAAGALHGDLGQGAREQAL 334 Query: 289 ERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLF 348 ++G++DIL+ATDVAARG+DV+ ++ V N+ P D ++YVHR+GRTGRAG G A+ Sbjct: 335 RAFRNGKVDILVATDVAARGIDVDDVTHVFNFQAPEDEKTYVHRVGRTGRAGNKGVAVTL 394 Query: 349 VENRERRLLRNIERTMKLTIPE 370 V+ + I++ + L PE Sbjct: 395 VDWEDMPRWSLIDKALGLGQPE 416 >UniRef50_Q0BSI7 ATP-dependent RNA helicase n=54 Tax=Alphaproteobacteria RepID=Q0BSI7_GRABC Length = 763 Score = 297 bits (760), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 156/369 (42%), Positives = 228/369 (61%), Gaps = 4/369 (1%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 FADLGL P+ A+ ++GY P+PIQA+ IP +L GRDVLG AQTG+GKTA+F+LP++ Sbjct: 225 FADLGLSEPVQRAITEMGYLHPTPIQAQAIPVVLMGRDVLGCAQTGTGKTASFTLPMMDI 284 Query: 68 LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 L + P+ L+L PTRELA+QVAE + ++++ +N L GG+ + Q L + Sbjct: 285 LSDRRARARMPRSLILEPTRELALQVAENFVKYGQYLK-LNHALLIGGESMNDQRDVLSK 343 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 G +++ TPGRL+D RG L L+ LV+DEAD ML MGFI DVE I++ +P QT Sbjct: 344 GVDVLIATPGRLIDLFDRGGLLLTDTRILVIDEADRMLDMGFIPDVERIVSLLPHNRQTL 403 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 FSATM IRR+ F++ P+E+ + + I+ V M K +AL L E Sbjct: 404 FFSATMAPEIRRLADAFLQNPKEITVAKPASVATTITSGLALVGEMDKRKALRHLLRQEK 463 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 A+IF K + ++L ++G+ + L+GD+ Q+LR TLE+ K G L +L+ +DV Sbjct: 464 VQNALIFCNRKRDVDILTKSLVKHGFAAGPLHGDLAQSLRFSTLEKFKAGSLQLLVCSDV 523 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 AARG+D+ +S V N+D+P+ +E YVHRIGRTGRAGR G A ++ + IE+ + Sbjct: 524 AARGIDIGGLSHVFNFDVPIHAEDYVHRIGRTGRAGREGAAFTLASPDDKFAVDAIEKLI 583 Query: 365 KLTIPEVEL 373 IP +E+ Sbjct: 584 NAPIPRIEI 592 >UniRef50_B2S409 ATP-dependent RNA helicase n=3 Tax=Treponema RepID=B2S409_TREPS Length = 649 Score = 296 bits (759), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 166/373 (44%), Positives = 227/373 (60%), Gaps = 7/373 (1%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNG-RDVLGMAQTGSGKTAAFSLPL 64 +F +LGL L A+ G+ P+PIQA IP LL G +++ A+TG+GKTAAF LPL Sbjct: 46 VSFEELGLNEQSLAAVRLKGFRCPTPIQAAAIPRLLAGDANIIAKARTGTGKTAAFGLPL 105 Query: 65 LQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 +Q L + P LVL PTRELA QVA ++ + + + +YGG QLR L Q Sbjct: 106 IQELGSPCEHPGALVLVPTRELAAQVASELSSL-RIQKIPRIHTVYGGVSIAEQLRNLEQ 164 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 G +I+VGT GR++DH++RG+L+LS L +LDEADEML MGF+ED+E+I + + + Sbjct: 165 GGEIIVGTTGRVIDHIERGSLELSYLRYFILDEADEMLNMGFVEDIESIFSHANKDARVL 224 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 +FSATMP I I FM + V + RP I Q W V K EALVR ++ D Sbjct: 225 MFSATMPRQILSIASTFMGSYEVVEEVTPEEARPLIEQFMWVVRDADKIEALVRLIDVSD 284 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 ++F +TK VA++L+ Y+ AAL+GD+ Q+ RE+ LER + R IL+ATDV Sbjct: 285 NFYGLVFCQTKADADTVAKSLDERHYHVAALHGDIPQSQREKILERFRTKRARILVATDV 344 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 AARG+D+E I+ VVNY IP DS +Y HR+GRTGRAG G A+ FV E R + + + Sbjct: 345 AARGIDIEGITHVVNYSIPHDSATYTHRVGRTGRAGSQGIAISFVRPHETRRMEYLSKHC 404 Query: 365 K-----LTIPEVE 372 T+P VE Sbjct: 405 NGELKASTVPLVE 417 >UniRef50_B6BTD3 Dead/deah box helicase domain protein n=1 Tax=beta proteobacterium KB13 RepID=B6BTD3_9PROT Length = 444 Score = 296 bits (759), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 148/370 (40%), Positives = 232/370 (62%), Gaps = 9/370 (2%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +F++ G PI +A++ + Y P+PIQ +CIP +L+G+DVL AQTG+GKTAAF LPLL Sbjct: 2 SFSNFGFIPPIGKAISRINYSTPTPIQEQCIPVVLSGKDVLASAQTGTGKTAAFCLPLLN 61 Query: 67 NLDPELK-------APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119 ++ + K +P +L+L+PTRELA Q+ + + FS H N+V++ GG Y +Q Sbjct: 62 LVEKKPKHKHKRNISPDVLILSPTRELATQIEQELKRFS-HFMDTNIVSVVGGVSYKLQN 120 Query: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179 + L+ +V TPGRL+D +K+ ++L + LV+DEAD ML MGFI D++ I + Sbjct: 121 KLLKSNVNFLVATPGRLMDLVKQRKINLKHIDALVIDEADRMLDMGFIPDIKKIFESTSQ 180 Query: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM-RKNEALVR 238 Q +F+AT+ + I +I ++F+K+PQ + ++ + +I Q + V +K LV Sbjct: 181 DQQVLMFTATLNKQIEKIAQQFLKDPQRIAVEQENKSNKNIQQIAYPVADYNQKKLVLVD 240 Query: 239 FLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDI 298 L D + AIIF TK +++ L + S L+GDM+Q R +T+ R K+ + I Sbjct: 241 VLNEADLNQAIIFTATKREADRLSDELYLMNHRSKTLHGDMSQRERTRTINRFKNNEIQI 300 Query: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLR 358 L+ATDVAARG+DV+ I+ V+N+D+P E Y+HRIGRTGRA R G+A+ V ++E+ +L+ Sbjct: 301 LVATDVAARGIDVDDITHVINFDLPRQVEDYIHRIGRTGRAERKGKAISLVIDKEKFMLQ 360 Query: 359 NIERTMKLTI 368 IE+ + I Sbjct: 361 KIEKYANIKI 370 >UniRef50_C6C1F3 DEAD/DEAH box helicase domain protein n=2 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6C1F3_DESAD Length = 493 Score = 296 bits (759), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 150/366 (40%), Positives = 230/366 (62%), Gaps = 7/366 (1%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +F I+ ++ GYE P+PIQ + IP +L GRDV+G+AQTG+GKTAAF+LP++Q Sbjct: 2 SFKQFSFDRRIMAGIHACGYETPTPIQTKAIPEVLKGRDVMGLAQTGTGKTAAFALPIMQ 61 Query: 67 NLDPELKAPQ----ILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 L + + Q +LVLAPTRELA+Q+ E + G+ A++GG Q++A Sbjct: 62 RLLEKKFSGQGPIRVLVLAPTRELALQIHENFMELGVEA-GIRSAAVFGGVGAMPQIQAA 120 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 R+ ++V PGRLLD + +G + L K+ LVLDEAD ML MGF+ D+ IM+++P+ Q Sbjct: 121 RRS-SVIVACPGRLLDLMNQGVIKLDKVDTLVLDEADRMLDMGFLPDIRKIMSKLPQRRQ 179 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 LFSATMP+ IR + + + P V++ ++ + + ++ V KN L + LE Sbjct: 180 NLLFSATMPDDIRDLADKILYRPATVQVANTAPAK-TVEHVFYPVSQHLKNNLLFKVLEQ 238 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 D+D+ ++F RTK+ +A L G+ + L G+M+Q R++ L+ +DG +++AT Sbjct: 239 TDYDSLLVFTRTKHKAKNLARRLAARGHKATFLQGNMSQNQRQRALDGFRDGSFKVMVAT 298 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 D+AARG+D +RI+ VVN D+P +E+Y HRIGRTGRAGR+G A FV + RL+R IE+ Sbjct: 299 DIAARGIDCDRITHVVNLDVPDTAETYTHRIGRTGRAGRSGSAFSFVTRDDLRLMREIEK 358 Query: 363 TMKLTI 368 + +I Sbjct: 359 AVGYSI 364 >UniRef50_A8IAJ3 Helicase n=4 Tax=Alphaproteobacteria RepID=A8IAJ3_AZOC5 Length = 582 Score = 296 bits (757), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 161/370 (43%), Positives = 225/370 (60%), Gaps = 9/370 (2%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +F++LGL +L A+ GY P+PIQA+ IPH+L RDVLG+AQTG+GKTAAF+LP+L Sbjct: 65 SFSELGLSEKVLSAVAATGYTTPTPIQAQAIPHVLARRDVLGLAQTGTGKTAAFTLPMLT 124 Query: 67 NLD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 L+ + P+ L+L PTRELA QV E + K+ + +NV L GG + Q L Sbjct: 125 LLEQGRARARMPRTLILEPTRELAAQVEENFVRYGKNHK-LNVALLIGGVSFGDQDTKLL 183 Query: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183 +G +++ TPGRLLDH++RG L LS + LV+DEAD ML MGFI D+E I +P QT Sbjct: 184 RGVDVLIATPGRLLDHVERGRLLLSGIEVLVIDEADRMLDMGFIPDIERICKLVPFTRQT 243 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWG---MRKNEALVRFL 240 FSATMP I+R+ +F+ P V + + I+Q G K E L + Sbjct: 244 LFFSATMPPEIQRLVSQFLSNPVRVEVSKPASANTSITQ-LLVASGREDYEKRETLRELI 302 Query: 241 -EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299 A+ I+F K V +L+++G+N L+GDM+Q R Q L++ + G +L Sbjct: 303 RNADQLQNGIVFCNRKRDVAVVHRSLQKHGFNVVCLHGDMDQHARTQALDQFRTGEATLL 362 Query: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359 +A+DVAARGLD+ +S V NYD+P SE YVHRIGRTGRAGR G A++ V + + + L Sbjct: 363 VASDVAARGLDIPAVSHVFNYDVPHHSEDYVHRIGRTGRAGRTGTAIMLVTHDDAKSLAA 422 Query: 360 IERTMKLTIP 369 IE+ + IP Sbjct: 423 IEKLIGNAIP 432 >UniRef50_Q1CXY8 ATP-independent RNA helicase DbpA n=3 Tax=Deltaproteobacteria RepID=Q1CXY8_MYXXD Length = 461 Score = 295 bits (756), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 165/373 (44%), Positives = 235/373 (63%), Gaps = 4/373 (1%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F+ L L P+L+ L +L ++ +PIQA+ IP LL GRD++G AQTGSGKTAAF+LPLLQ Sbjct: 3 FSALALSPPLLQVLEELDFKTATPIQAQSIPVLLQGRDLVGQAQTGSGKTAAFALPLLQK 62 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 + + + Q LVL PTREL QVA + + + G+ V+ L GGQ QL AL +G Sbjct: 63 VQLQHRKVQALVLCPTRELCAQVAGEIRRLGRRLPGLQVLVLAGGQPIRPQLEALEKGAH 122 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 + VGTPGR++D L R L+ +LS +VLDEAD ML MGF ED+E I+ +P QT LFS Sbjct: 123 LAVGTPGRVMDVLDREALETRQLSTVVLDEADRMLDMGFREDMERILGAMPPRRQTVLFS 182 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 AT P I ++R F ++P V ++++ T PDI Q + K L+R L + Sbjct: 183 ATFPPDIEALSRDFQRQPVRVTVEAA-TAGPDIQQVRYDCEPGDKQALLLRILRHYQPAS 241 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 AI+F K +E+ ++L +G + L GD+ Q R++ + + ++ +LIATDVA R Sbjct: 242 AIVFCNLKATVVELKKSLSASGVSVDGLQGDLEQFERDRVMAKFRNQSTRVLIATDVAGR 301 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT--MK 365 G+DVE + V+N+D+PM +E YVHRIGRTGRAGRAG A+ V R+ R + +I+ +K Sbjct: 302 GIDVEALDAVINFDLPMQAEPYVHRIGRTGRAGRAGLAVSIVTPRDGRKVDDIQLATGVK 361 Query: 366 LTIPEVE-LPNAE 377 L +VE LP+A+ Sbjct: 362 LERGDVESLPSAD 374 >UniRef50_Q0AFH3 DEAD/DEAH box helicase domain protein n=1 Tax=Nitrosomonas eutropha C91 RepID=Q0AFH3_NITEC Length = 488 Score = 295 bits (756), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 157/385 (40%), Positives = 236/385 (61%), Gaps = 11/385 (2%) Query: 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 + TF L L + IL A+ D GY P+PIQA+ IP +L G+DV+ AQTG+GKTA F+LPL Sbjct: 4 DVTFEQLDLSSEILRAVIDEGYINPTPIQAQVIPPILAGKDVMASAQTGTGKTAGFTLPL 63 Query: 65 LQNL--------DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYD 116 L +L P + L++APTRELA+Q+ E++ + K++ + ++GG + Sbjct: 64 LHHLQAHASSSTSPARHPVRALIMAPTRELAMQIDESVRKYGKYL-ALRTTVVFGGVNIE 122 Query: 117 VQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQ 176 Q+ LR G +I+V TPGRLLD ++ ++ SK LVLDEAD ML MGF+ D++ +MA Sbjct: 123 PQITELRNGVEILVATPGRLLDLVEHKAVNFSKTEILVLDEADRMLDMGFLPDIKKVMAL 182 Query: 177 IPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEAL 236 +P Q+ +FSAT + IR++ +K P + + + T IS + K L Sbjct: 183 LPSQRQSLMFSATFSDEIRKLADGLLKHPVRIEVAAQNTINESISHVVHRIKPESKFALL 242 Query: 237 VRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRL 296 + ++ +D A++FV+TK+ ++A+ L + + A++GD NQ R Q L K G + Sbjct: 243 LHLVKQQDLKQALVFVKTKHGASQLAQMLSHHKILALAIHGDKNQQQRTQALSEFKHGDV 302 Query: 297 DILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRL 356 IL+ATDVAARG+D+E++S VVNY++P + E YVHRIGRTGRAG G+A+ V E L Sbjct: 303 QILVATDVAARGIDIEKLSHVVNYELPGNPEDYVHRIGRTGRAGSKGKAISLVSEHETEL 362 Query: 357 LRNIERTM--KLTIPEVELPNAELL 379 L +IE+ + KL I ++ +AEL Sbjct: 363 LTSIEKLLNTKLEIEQIAGFDAELF 387 >UniRef50_Q98RE0 ATP-DEPENDENT RNA HELICASE n=1 Tax=Mycoplasma pulmonis RepID=Q98RE0_MYCPU Length = 480 Score = 295 bits (756), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 166/468 (35%), Positives = 259/468 (55%), Gaps = 9/468 (1%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F + +K+ IL++L+++G+EKP+ IQ +P G+D++G AQTG+GKTAAF++P+L N Sbjct: 3 FTQMNIKSEILKSLDEIGFEKPTKIQEAVLPFAFEGKDIIGQAQTGTGKTAAFAIPILSN 62 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 LD + Q LV+APTRELA Q+ + + K+ + + GG Y+ Q AL G Sbjct: 63 LDCSINRIQHLVIAPTRELANQIYDQLNILGKYTCS-KIALILGGVSYEKQKAALNSGVN 121 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 IVV TPGRL D L + +DLS + LDEADE+L++GF ++ IM ++P+ Q F+ Sbjct: 122 IVVATPGRLEDLLAQNKIDLSHIKTFTLDEADELLKIGFYNEIIKIMNKLPKKRQNFFFT 181 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 AT E +++++ E + + + S + T I Q++ V K LV+FL+ + A Sbjct: 182 ATFDEKTKKLSQEITNEAKMISMSSGLETTEKIDQNFVVVSEEEKLITLVKFLDFKKPTA 241 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 ++IF RTK E+A AL+ G+++ + GDM Q R L R KD +++I++ATDV AR Sbjct: 242 SVIFGRTKRRVDELASALQELGFSAVGIQGDMVQKDRTSVLNRFKDQKVNIIVATDVMAR 301 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 G+DV + LV N+D+P + E Y HRIGRTGR R G+A+ FV+ E + I K Sbjct: 302 GIDVSHVDLVFNFDLPEEIEYYTHRIGRTGRGTRIGQAISFVKKPEVGYIYKIMTETKSI 361 Query: 368 IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAA 427 I E+ +P+ E L + K+ LE + +R + + +L L + Sbjct: 362 IKEISIPSKEHLQTVWEDHLINKLSSILEDAQNKHWREDVVQKDILERYSPRELSILLWS 421 Query: 428 LLKMAQGER-TLIVPPDAPMRPKRE-------FRDRDDRGPRDRNDRG 467 + +G R L + P+ P+R K+ F+ R RN R Sbjct: 422 YIIQEKGLRKNLKLTPEPPVRYKKNNDSNKGRFQSRTSSHLEKRNRRN 469 >UniRef50_B8FPB9 DEAD/DEAH box helicase domain protein n=12 Tax=Bacteria RepID=B8FPB9_DESHD Length = 428 Score = 295 bits (755), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 167/400 (41%), Positives = 248/400 (62%), Gaps = 20/400 (5%) Query: 10 DLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNL- 68 +L + PI +AL GY + +PIQAE IPHLL G D+LG AQTG+GKTAAF++P+LQ+L Sbjct: 8 ELKIINPIQKALAAQGYSEATPIQAEAIPHLLEGLDLLGCAQTGTGKTAAFAIPILQSLA 67 Query: 69 --DPELKAP-QI--LVLAPTRELAVQVAEAMTDFSKHMRGVNV----VALYGGQRYDVQL 119 LK QI LVLAPTRELA Q+AE+ T + GVN+ + ++GG Q Sbjct: 68 MGQGLLKGKRQIRALVLAPTRELATQIAESFTAY-----GVNLPLRTLVIFGGVGQAPQT 122 Query: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179 R L +G I+V TPGRLLD + +G +DLS + VLDE D+ML MG + DV+ I+ +P Sbjct: 123 RKLEKGIDILVATPGRLLDLINQGFIDLSHVEHFVLDETDQMLDMGMLHDVKRIITYLPR 182 Query: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239 Q LFSATMP I ++ +K P ++ + + I Q + V K L + Sbjct: 183 ERQNMLFSATMPVEIEKLADTILKGPVKIAMTPEFSPLDIIEQEVYFVDKANKAALLTYW 242 Query: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299 L+ ++D+ ++F RTK+ ++ + L + G+ + A++G+ +QA REQ L K + IL Sbjct: 243 LKNNEYDSVLVFSRTKHGADKIVKELNKKGFTAVAIHGNKSQANREQALHAFKKRKTRIL 302 Query: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359 +ATD+AARGLD++ +S V+NY++P E+Y+HRIGRTGRAG G+A+ F + E+ LLR+ Sbjct: 303 VATDIAARGLDIQELSHVINYNLPEVPETYIHRIGRTGRAGLGGKAITFCDFEEKPLLRD 362 Query: 360 IERTMKLTIPEVE-----LPNAELLGKRRLEKFAAKVQQQ 394 I++ + T+PEV+ L N ++ K + + AA + Q Sbjct: 363 IQKRIGKTLPEVKEHPYPLVNTVIVPKAKTSQQAAAARPQ 402 >UniRef50_A7HDE9 DEAD/DEAH box helicase domain protein n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HDE9_ANADF Length = 680 Score = 295 bits (755), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 153/416 (36%), Positives = 251/416 (60%), Gaps = 2/416 (0%) Query: 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 + +F +LGL P+ A+ + GYE+P+P+Q + +G+DV+ ++TG+GKTAAF++P+ Sbjct: 19 QASFDELGLSEPVRRAIAEHGYERPTPVQVSTFRPVRDGKDVIVRSKTGTGKTAAFAIPI 78 Query: 65 LQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 L+ + + P LV+ PTRELA+QVA+ T +KH R ++VVA+YGG QL+ L Sbjct: 79 LERIADGRRRPSALVMCPTRELAIQVAQEFTALAKH-RDLSVVAVYGGASMGEQLQKLEA 137 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 G +I+VGTPGR+ DH++R TL L + LDEADEML MGF E+V I+ +P+ Q Sbjct: 138 GAEIIVGTPGRIYDHIRRRTLKLDETMVCCLDEADEMLNMGFFEEVTRILDNLPKDCQQL 197 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQS-YWTVWGMRKNEALVRFLEAE 243 LFSAT+P I +I R ++ +P+ + + + +I Y V K L+ +E E Sbjct: 198 LFSATVPADIEQIIRDYLTDPETILLSGDEYSVENIHNVMYPAVDAYPKPRNLLYMIEME 257 Query: 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 303 + + AI+F T+N T VA L RNGY++ LNGD+ Q RE+ + ++K G + ++ATD Sbjct: 258 EPETAIVFCNTRNDTSLVAAVLNRNGYDAELLNGDLPQKERERVMAKVKRGEVRFMVATD 317 Query: 304 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 363 +AARG+D+ ++ V+NY +P D ++HR+GRTGR G+ G +L V E L +++ Sbjct: 318 IAARGIDISDLTHVINYSLPEDPAVFLHRVGRTGRIGKKGTSLSIVSGAEIHTLTALQKK 377 Query: 364 MKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEL 419 + E +LP + + ++ +++ + +S + + L +++ +GE L Sbjct: 378 FGIAFEEKKLPTPDEARRLWTDRHVVELKDAMSASIFEAFIPLSQELRNRPDGEYL 433 >UniRef50_C8P164 ATP-dependent RNA helicase DbpA n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P164_ERYRH Length = 487 Score = 295 bits (755), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 154/384 (40%), Positives = 233/384 (60%), Gaps = 2/384 (0%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 TF + G+ IL+++ LGYE P+ +Q E IP +L+G++++ +QTGSGKTA+F +P+ Sbjct: 4 TFKNYGIDDSILKSIQYLGYEAPTDVQQEVIPAVLSGKNIVVQSQTGSGKTASFGIPICH 63 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 ++ + + PQ+LVLAPTRELA+Q+ E + + + R + V AL+G ++ Q + L++ Sbjct: 64 QVEWKKRKPQVLVLAPTRELAIQIQEDLFNLGRFKR-LKVEALFGRSSFEKQAQRLKEMT 122 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 I+V TPGRLLDH+ R T+DLS + LV+DEADEM MGFI+ + +I+ +IP+ Q LF Sbjct: 123 HILVATPGRLLDHMARETVDLSHIETLVIDEADEMFNMGFIDQITSIINRIPKKSQKLLF 182 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SATMPE ++ + ++K PQ + I++ I + Y+ V K L L E+ D Sbjct: 183 SATMPERVKDLCTLYIKNPQWIDIETESRVEDRIDERYYIVDYPDKMALLESVLITENPD 242 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 ++IIF TK V +E G L+G M Q R + L K G L+ATDVAA Sbjct: 243 SSIIFCNTKEQVESVTNFMEDLGCKVDTLHGGMEQRFRTKVLADFKHGLFRYLVATDVAA 302 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RGLD++ +SLVVN+D+P ++ESY HR+GRT R + G+A+ F E + + I Sbjct: 303 RGLDIDDVSLVVNFDVPENTESYTHRVGRTARVDKYGKAVTFASPYEMKFMNLIINDTDH 362 Query: 367 TIPEVELPNAELLGKRRLEKFAAK 390 + +V P L+ RR + F AK Sbjct: 363 ELQKVVKPGQSLVDARR-DAFEAK 385 >UniRef50_C6HUU6 Putative ATP-dependent helicase n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HUU6_9BACT Length = 472 Score = 295 bits (754), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 159/364 (43%), Positives = 231/364 (63%), Gaps = 7/364 (1%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL- 65 +F LGL +L AL+DL +E P+PIQ + IP ++ GRDVLG+AQTGSGKT F LP L Sbjct: 2 SFETLGLNPDLLRALSDLKHESPTPIQKQTIPPIIEGRDVLGVAQTGSGKTGGFLLPSLH 61 Query: 66 --QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 + QILVL+PTRELA Q+ + ++ K++R V+ L GG Q+ LR Sbjct: 62 RNKRAQGNRTRHQILVLSPTRELAGQIERSAREYGKYLRSRTVL-LVGGTDMRRQIDFLR 120 Query: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183 + +V+ TPGRL+DH++RGT++LS + +VLDEAD ML MGF+ DVETI+ + QT Sbjct: 121 RPWDLVIATPGRLIDHMQRGTINLSHVHTVVLDEADRMLDMGFLPDVETILKALHPERQT 180 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAE 243 LF+AT+P I+ +T+ + K+P +R++++ I Q + + L++ + E Sbjct: 181 LLFTATLPARIQMLTKTYQKDPVLIRLETASAPPVSIDQEVVAISHGAQKWGLLKTILTE 240 Query: 244 DFDA---AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 +IF RTK ++A L G+ S AL+GD +Q+ R + L + + G+ IL+ Sbjct: 241 PQTTEGQTLIFTRTKRGAEDLANQLLAEGFPSDALHGDKSQSQRNRVLSKFRAGQTRILV 300 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATDVAARGLD++ ++ V+NYD+P E YVHRIGRTGRAGR+GRA+ F +R LLR+I Sbjct: 301 ATDVAARGLDIDTVTCVINYDLPQSPEDYVHRIGRTGRAGRSGRAISFCHPADRNLLRDI 360 Query: 361 ERTM 364 ER + Sbjct: 361 ERLL 364 >UniRef50_A9GSG9 Family membership n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GSG9_SORC5 Length = 812 Score = 295 bits (754), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 170/414 (41%), Positives = 245/414 (59%), Gaps = 8/414 (1%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 TF L L + + E L ++GY P+P+Q + GRD + A+TG+GKTAAF LP++ Sbjct: 29 TFDVLPLSSELRETLAEIGYVHPTPVQLAVWEPVTRGRDAVVQARTGTGKTAAFGLPIVD 88 Query: 67 N-LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 + + L Q+L L PTRELA+QV+ + K +G+ VVA+YGG Q+ AL G Sbjct: 89 HAVKRSLAQAQVLALCPTRELALQVSAEVERLGKR-KGIKVVAVYGGAPMQRQIDALAAG 147 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 Q++VGTPGR+LDHL+RGT+ + LVLDE DEML MGF ++ I+A++P QT L Sbjct: 148 AQVIVGTPGRVLDHLRRGTIVAKHIRLLVLDECDEMLSMGFERELTAILAELPPERQTLL 207 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSAT+P I RI R ++ P+ + + I + + G K +LVR +E E+ Sbjct: 208 FSATLPPDIERIARSKLRSPEFITLSGDAVGALQIQHYVYLITG-DKLTSLVRIIEVENP 266 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 + A+IF TK+ T VA AL+R GY++ LNGD+ Q+ RE+ + ++GRL L+ATDVA Sbjct: 267 ENAVIFCNTKDETEAVAGALKRQGYDADWLNGDLPQSDREKVMSATREGRLRFLVATDVA 326 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARG+D+ ++ V+NYD P D+E+YVHR GRTGRAGR G A+ + ++ L + T K Sbjct: 327 ARGIDISHLTHVINYDFPQDAEAYVHRTGRTGRAGRTGTAIALITPQDVGPLYILRLTYK 386 Query: 366 LTIPEVELPNAELLGKRRLEKFAAKVQQQLESS-----DLDQYRALLSKIQPTA 414 + E +LP+ L R A + + S DL R LL+ Q A Sbjct: 387 IRPLEKQLPSEGELKTRAEADLVAMLAEAFLSKGTHRDDLSLARRLLTHDQAEA 440 >UniRef50_Q0HYG8 DEAD/DEAH box helicase domain protein n=78 Tax=Bacteria RepID=Q0HYG8_SHESR Length = 549 Score = 294 bits (753), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 158/400 (39%), Positives = 247/400 (61%), Gaps = 14/400 (3%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +F+ LGL PI +A+ + GY+ PSPIQA+ IP +L G+DV+ AQTG+GKTA F+LPLL+ Sbjct: 2 SFSSLGLSLPIQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLE 61 Query: 67 NLDP--ELKAPQI--LVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 L + KA QI LVL PTRELA QV+E++ + K++ + ++GG + Q++ L Sbjct: 62 LLSKGNKAKAGQIRALVLTPTRELAAQVSESVETYGKYL-PLRSAVVFGGVPINPQIQKL 120 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 R G ++V TPGRLLD +++ + ++L LVLDEAD ML MGFI D++ I+A +P Q Sbjct: 121 RHGVDVLVATPGRLLDLVQQNVVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKRQ 180 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 +FSAT + IR + + + +P E+ + + Q V +K+ L++ ++ Sbjct: 181 NLMFSATFSDEIRELAKGLVNQPVEISVTPRNAAANTVKQWICPVDKNQKSALLIQLIKQ 240 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 ED+ ++F RTK+ +A++L + ++AA++G+ +Q R + L K G + +L+AT Sbjct: 241 EDWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLVAT 300 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 D+AARGLD++++ VVN+D+P E YVHRIGRTGRAG +G+A+ V + E +LLR+IER Sbjct: 301 DIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSSEEFKLLRDIER 360 Query: 363 TMKLTI---------PEVELPNAELLGKRRLEKFAAKVQQ 393 + + P LP + L+ + K A Q Sbjct: 361 LINRVLERQEIEGFGPAHALPESTLIAHGKDNKVKAVASQ 400 >UniRef50_B0SYC6 DEAD/DEAH box helicase domain protein n=33 Tax=Alphaproteobacteria RepID=B0SYC6_CAUSK Length = 678 Score = 294 bits (752), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 159/352 (45%), Positives = 222/352 (63%), Gaps = 11/352 (3%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL- 64 T F++LGL L+A+ D GY +PIQA IP L G+DVLG+AQTG+GKTAAF+LPL Sbjct: 2 TEFSELGLSPTTLQAVADTGYTTATPIQAAAIPVALAGQDVLGIAQTGTGKTAAFTLPLI 61 Query: 65 --LQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNV--VALYGGQRYDVQLR 120 L N + + P+ LV+APTRELA QVA + F K+ +G + L GG + Q + Sbjct: 62 DKLMNGRAKARMPRALVIAPTRELADQVA---SSFEKYAKGTKLSWALLIGGVSFGDQEK 118 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 L +G +++ TPGRLLDH +RG L ++ + LV+DEAD ML MGFI D+E I P Sbjct: 119 KLDRGVDVLIATPGRLLDHFERGKLLMTGVQFLVVDEADRMLDMGFIPDIERIFKMTPPK 178 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM---RKNEALV 237 QT FSATMP I R+T++F+K+P + TT +I+Q V K AL Sbjct: 179 KQTLFFSATMPPEITRLTKQFLKDPVRIEASRPATTNENITQLMVKVPSSDPKAKRLALR 238 Query: 238 RFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLD 297 +E + I+F K VA++L+ +G+++AA++GD++Q+ R +TL +DG L Sbjct: 239 ALIEKAQIETGIVFCNRKTEVDVVAKSLKSHGFDAAAIHGDLDQSQRTKTLAAFRDGSLK 298 Query: 298 ILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFV 349 IL+A+DVAARGLD+ +S V NYD+P ++ YVHRIGRTGRAGR+G + V Sbjct: 299 ILVASDVAARGLDIPAVSHVFNYDVPHHADDYVHRIGRTGRAGRSGVTYMLV 350 >UniRef50_B0TQ71 DEAD/DEAH box helicase domain protein n=31 Tax=Gammaproteobacteria RepID=B0TQ71_SHEHH Length = 437 Score = 293 bits (751), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 150/354 (42%), Positives = 217/354 (61%), Gaps = 9/354 (2%) Query: 25 GYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNL------DPELKA--PQ 76 GY++P+ IQAE IP +L GRD++ AQTG+GKTAAF+LPLLQ L D + KA Sbjct: 44 GYQQPTAIQAEAIPAILAGRDIMASAQTGTGKTAAFTLPLLQRLIDKSSSDEQSKAKRAS 103 Query: 77 ILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRL 136 +LVLAPTRELAVQV ++ ++ + V+ + +YGG D Q L G ++V TPGRL Sbjct: 104 VLVLAPTRELAVQVNTNVSQYAVNT-DVSSIVIYGGVSIDAQATKLAAGVDVIVATPGRL 162 Query: 137 LDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRR 196 LDH++RGTL+LS + LV DEAD ML MGF++++ I+ Q+P QT LFSAT AI Sbjct: 163 LDHVRRGTLNLSDIEYLVFDEADRMLDMGFMDEINAILKQLPAKRQTLLFSATFSSAIFE 222 Query: 197 ITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKN 256 ++++ +++P + + + + I Q + V RK E L + + ++F R K Sbjct: 223 LSKKLLQKPLRIEVDKANSAANSIEQVVYAVDSERKTELLCHLINKSAWQQVLVFSRKKQ 282 Query: 257 ATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISL 316 +A+ + G + A +GD+ Q REQ L K G++ L+ATDVAARGLD+ + + Sbjct: 283 TADLIAQKMLAAGIEAKAFHGDLGQGAREQVLNDFKQGKIKALVATDVAARGLDIVELKV 342 Query: 317 VVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370 VVNY+IP +E YVHRIGRTGRAG G+A+ + LL +E + +P+ Sbjct: 343 VVNYEIPFVAEDYVHRIGRTGRAGNTGKAITLYSEDDALLLEEVESVIDKRLPQ 396 >UniRef50_A3ZWP8 ATP-dependent RNA helicase n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZWP8_9PLAN Length = 428 Score = 293 bits (750), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 162/373 (43%), Positives = 227/373 (60%), Gaps = 5/373 (1%) Query: 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 + +AD+ L + AL Y +PSPIQA IP L GRDVLG A+TG+GKTAAF +P+ Sbjct: 3 DINYADMALSVEMKAALEAARYIQPSPIQAAIIPLALEGRDVLGQARTGTGKTAAFGIPI 62 Query: 65 LQNLD--PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 ++ L+ P + PQ L+L PTRELAVQV + + + H + +NVVA+YGG+ Q+ L Sbjct: 63 IERLEHGPNSRNPQALILTPTRELAVQVRDEIAKLT-HGQRINVVAVYGGKPLRSQMEKL 121 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 ++ P IVVGTPGR++D + R L L L +VLDEAD ML +GF D+E I+ + PE Q Sbjct: 122 KRAPHIVVGTPGRVIDLMTRRALQLEMLRTVVLDEADRMLDIGFRPDIEKILRRCPEERQ 181 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 T L SAT+P I ++ +R+M+ P++V + + I Q Y+TV +K + LV L+ Sbjct: 182 TLLLSATVPPTIEKLAQRYMRNPEKVDFSPTNISAETIEQRYFTVDHSKKFDMLVELLKR 241 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 E AI+F RTK T + + L + ++GDM Q R + L K + +L+AT Sbjct: 242 EQPQKAIVFCRTKRGTERITQRLSKKTKLVHCIHGDMQQGARNRALSDFKASKFRVLVAT 301 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE- 361 DV RG+D+ +S ++NYDIP S+ YVHR+GRTGR G+ G A FV E L IE Sbjct: 302 DVVGRGIDISDVSHIINYDIPEFSDDYVHRVGRTGRMGKEGIAYTFVTPEEGNELTRIEV 361 Query: 362 RTMKLTIPEVELP 374 R KL I + ELP Sbjct: 362 RIDKLLIRD-ELP 373 >UniRef50_B2UL73 DEAD/DEAH box helicase domain protein n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UL73_AKKM8 Length = 423 Score = 293 bits (750), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 152/373 (40%), Positives = 232/373 (62%), Gaps = 8/373 (2%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 TTF +LGL APIL L +L Y+ P+PIQA CIP LL +D++G+AQTG+GKTAAF+LP Sbjct: 2 VSTTFRELGLSAPILRQLENLEYKTPTPIQAACIPLLLQNKDLMGLAQTGTGKTAAFALP 61 Query: 64 LLQNLDPELKAP-----QILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQ 118 L+Q L P + L+L+PTRELA Q+ E + +++ + ++ ++GG Y Q Sbjct: 62 LIQQLSERSGKPPGRRVRALILSPTRELAAQIHENIRAYARGLH-LSTAVIFGGVGYASQ 120 Query: 119 LRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP 178 + L G I+V TPGRL+DHL+R T+ L + L+LDEAD ML MGF ++ I+++IP Sbjct: 121 FKELAGGLDILVATPGRLIDHLERRTVSLDGVETLILDEADHMLDMGFAPALKKIVSKIP 180 Query: 179 EGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEAL-V 237 T +FSATMP+ IR++ + +++P+ VR+ +T + Q V + L + Sbjct: 181 RKRHTQMFSATMPDNIRQLAQTLLQKPETVRVSPPSSTADRVEQFLCMVGSQSEKRLLTL 240 Query: 238 RFLEAEDFDA-AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRL 296 L+ ++ +IF RT++ +A L Y ++A++GD +Q RE+ L + G+ Sbjct: 241 ELLKQQELPGRTLIFTRTRHGADRLASFLSGKDYPASAIHGDKSQGRRERMLREFRSGKT 300 Query: 297 DILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRL 356 +L+ATD+AARG+DV+ + LV+NYD+P + E YVHRIGRT RAG AG+A+ E R Sbjct: 301 PVLVATDIAARGIDVKDVRLVINYDLPEEPEVYVHRIGRTARAGAAGQAIALCSPEEIRK 360 Query: 357 LRNIERTMKLTIP 369 RN+ + + +P Sbjct: 361 ARNVHKLLGRLLP 373 >UniRef50_B0SEU1 Superfamily II DNA and RNA helicase n=5 Tax=cellular organisms RepID=B0SEU1_LEPBA Length = 471 Score = 293 bits (750), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 148/368 (40%), Positives = 229/368 (62%), Gaps = 6/368 (1%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 TF+DL L I +A+ + GY KP+PIQ + IP LL+ D+LG AQTG+GKTAAF+LP++ Sbjct: 7 TFSDLKLDRYIQKAVAETGYTKPTPIQIQAIPLLLDNHDLLGCAQTGTGKTAAFALPMIH 66 Query: 67 NL-----DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 NL P K P+ LVL PTRELA+QV E+ + K+ + + ++GG + Q +A Sbjct: 67 NLISTRAKPNPKQPRSLVLVPTRELAIQVHESFVLYGKYTQ-IRTAVIFGGVGQNPQAKA 125 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 + G +++ TPGRL+D + + + L L VLDEAD ML MGFI D+ I++ +P+ Sbjct: 126 IASGLDVLIATPGRLVDLMNQNLVSLKNLEIFVLDEADRMLDMGFIHDIRKIISYLPKRR 185 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 Q FSATMP I ++ + EP + + +T ISQS K L+ + Sbjct: 186 QNLFFSATMPPEIEKLANSILVEPIRIDVTPVSSTVELISQSVMYTELADKKNLLLHLFK 245 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 ++F IIF +TK+ +++E L ++G + ++G+ +Q+ R++ LE + G+ L+A Sbjct: 246 DKNFKKTIIFTKTKHGANKISELLNKSGIKTDVIHGNKSQSARQRALEDFRSGKNRALVA 305 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 TD+AARG+D++ I+ V+NY+IP E+YVHRIGRT RAG+ G A+ E ER L+++IE Sbjct: 306 TDLAARGIDIDDITHVINYEIPYVPETYVHRIGRTARAGKNGIAIAIAEADERSLIKDIE 365 Query: 362 RTMKLTIP 369 + + ++IP Sbjct: 366 KVIGISIP 373 >UniRef50_A8L2H9 DEAD/DEAH box helicase domain protein n=2 Tax=Frankia RepID=A8L2H9_FRASN Length = 671 Score = 293 bits (750), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 167/372 (44%), Positives = 234/372 (62%), Gaps = 11/372 (2%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 TFA++G++A + AL ++G +P IQ +P L D++G A+TG+GKT AF +P++Q Sbjct: 105 TFAEIGVRAETVAALAEVGIIRPFAIQELTLPLALERTDIIGQARTGTGKTLAFGIPIVQ 164 Query: 67 NLD-PELKA---PQILVLAPTRELAVQVAEAMTDFSKHM--RGVNVVALYGGQRYDVQLR 120 + P+ A PQ LV+ PTREL VQV D ++ RG+ V+++YGG+ Y+ QL Sbjct: 165 VVTAPDEGADGRPQALVVVPTRELCVQV---TADIARAGLGRGLRVLSVYGGRAYEPQLS 221 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 ALR G IVVGTPGRLLD ++ LDL+ + LVLDEADEML +GF+ DVE I+A +PE Sbjct: 222 ALRAGVDIVVGTPGRLLDLARQKALDLAGVRALVLDEADEMLDLGFLPDVERILAFLPEQ 281 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTR--PDISQSYWTVWGMRKNEALVR 238 T LFSATMP + + RRFM P VR + R P+ Q + + K E L R Sbjct: 282 RHTMLFSATMPGPVISLARRFMTRPVHVRAEQPDEGRTVPNTQQHVFRAHALDKMEVLAR 341 Query: 239 FLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDI 298 L+AE A++FVRT+ +VAE L R G+ +A ++GD+ Q REQ L + G++D+ Sbjct: 342 VLQAESRGLAMVFVRTRRTADKVAEDLARRGFAAAPVHGDLGQGQREQALRAFRAGKVDV 401 Query: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLR 358 L+ATDVAARG+DV ++ VVNY P D +Y+HRIGRTGRAG +G A+ FV+ + Sbjct: 402 LVATDVAARGIDVGGVTHVVNYQCPEDEHAYLHRIGRTGRAGGSGVAVTFVDWDDLPRWT 461 Query: 359 NIERTMKLTIPE 370 + R + L E Sbjct: 462 LVNRALALPFEE 473 >UniRef50_A4X1W4 DEAD/DEAH box helicase domain protein n=4 Tax=Actinomycetales RepID=A4X1W4_SALTO Length = 621 Score = 293 bits (749), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 162/370 (43%), Positives = 231/370 (62%), Gaps = 7/370 (1%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 TFA+LG + ++ALN G + IQ +P L G D++G A TG+GKT F +PLL+ Sbjct: 98 TFAELGARKETVDALNAAGITRAFAIQEYALPIALRGVDLIGQAPTGTGKTLGFGVPLLE 157 Query: 67 NLDPELK----APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 + + PQ LV+ PTREL +QVA+ + + RGV V+ +YGG Y+ Q+ AL Sbjct: 158 RVFAPAEGGDGTPQALVVVPTRELGIQVAKDL-HAAGSTRGVRVLPIYGGVAYEPQIEAL 216 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 R G +I+VGTPGRLLD K+ L L ++ LVLDEAD ML +GF++DVE I+A +PE Q Sbjct: 217 RTGVEILVGTPGRLLDLAKQKQLKLDRVRALVLDEADRMLDLGFLDDVEKILAMLPEERQ 276 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTT--RPDISQSYWTVWGMRKNEALVRFL 240 T LFSATMP+ I ++RRF++ P + + T P Q + + K E + R L Sbjct: 277 TMLFSATMPDPIVALSRRFLRRPVTIHAGHTAETGPSPQTQQLAYRTHSLNKIEIVARIL 336 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 +A+ +IF RTK A VA L+ G+ AA++GD+ Q RE+ L + G++D L+ Sbjct: 337 QAKGRGLTMIFTRTKRAADRVAADLDFRGFAVAAVHGDLGQGARERALRAFRTGKIDTLV 396 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATDVAARG+DV ++ V+NYD P D ++Y HRIGRTGRAG +G A+ FV+ + R I Sbjct: 397 ATDVAARGIDVSGVTHVLNYDCPEDQDTYTHRIGRTGRAGASGVAVTFVDWDDMPRWRII 456 Query: 361 ERTMKLTIPE 370 ++T+ L +PE Sbjct: 457 DKTLGLEMPE 466 >UniRef50_C8WL27 DEAD/DEAH box helicase domain protein n=3 Tax=Eggerthella lenta DSM 2243 RepID=C8WL27_EGGLE Length = 508 Score = 293 bits (749), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 159/376 (42%), Positives = 226/376 (60%), Gaps = 6/376 (1%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 FADLGL L A+ LGYE P+P+Q + IP +L GRD++ A TG+GKTAAF LP+L Sbjct: 3 NFADLGLSEAALAAVERLGYENPTPVQLQAIPLVLEGRDLIAAASTGTGKTAAFLLPILS 62 Query: 67 NLDPELK----APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 L P K AP++LV++PTRELA Q+++ ++ G V ++GG Y Q+ + Sbjct: 63 TL-PRGKRGKRAPRVLVVSPTRELAQQISQTCMQITRKT-GHYVTTVFGGTPYGPQINEI 120 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 R+G +++ TPGRL D + +G +DL + LVLDEAD ML MGF+ V TI+ P Q Sbjct: 121 RRGTDVLIATPGRLNDLMNKGVVDLGGIKSLVLDEADRMLDMGFLPAVTTIVDATPADRQ 180 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 T LFSAT+ +I++ + +P V I + T + Q + +K E L LE Sbjct: 181 TLLFSATIDHSIQKNLGSLLNDPAVVEIARNGETAQTVEQFMMPIANFKKPELLQALLEE 240 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 + D I+F RTKN T + AEAL GY + +++ D +Q R++ L+ + GR IL+AT Sbjct: 241 KGSDRVIVFARTKNRTEDCAEALCDAGYRAESIHSDKSQGQRKRALDNFRRGRTSILVAT 300 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 DV ARG+DV + V+N+D+P E YVHRIGRTGRAG G A+ FV RR + +IE+ Sbjct: 301 DVLARGIDVPDVDHVINFDLPDMPEDYVHRIGRTGRAGEQGFAVSFVTRESRRTMSDIEK 360 Query: 363 TMKLTIPEVELPNAEL 378 + +P +EL EL Sbjct: 361 LIGKNVPLMELETYEL 376 >UniRef50_A5G1U8 DEAD/DEAH box helicase domain protein n=7 Tax=Alphaproteobacteria RepID=A5G1U8_ACICJ Length = 525 Score = 293 bits (749), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 160/363 (44%), Positives = 229/363 (63%), Gaps = 10/363 (2%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 T F LGL P+L A+++ YE P+PIQA IP +L G D++G+AQTG+GKTAAF LP+L Sbjct: 57 TDFTTLGLAEPLLRAISEQSYETPTPIQARSIPVMLEGHDLVGIAQTGTGKTAAFVLPIL 116 Query: 66 QNLD-----PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 + P +A + LVLAPTRELA Q+A+A + K R +V + GG + Q R Sbjct: 117 HRIAANRARPAPRACRALVLAPTRELATQIADAARTYGKFTRP-SVAVVIGGAKPGPQAR 175 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 + G ++V TPGRLLDH+ G + L + +VLDEAD+ML +GFI + IMA++P Sbjct: 176 RMESGVDLLVATPGRLLDHVAAGVIRLDAVETVVLDEADQMLDLGFIPAIRQIMAKLPRQ 235 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRP--DISQSYWTVWGMRKNEALVR 238 Q +FSATMP+ IR + F+++P+EV + SV ++P I Q + K + L Sbjct: 236 RQAVMFSATMPKPIRALAGEFLRDPREVAV--SVESKPVDRIDQQVLLLAPEEKKDKLAW 293 Query: 239 FLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDI 298 L + AI+F RTK+ +V LE G +AA++G+ +Q RE+ L++ + GR+ + Sbjct: 294 LLADVAVERAIVFTRTKHGADKVTRHLEDAGIGAAAIHGNKSQGQRERALDQFRSGRIRV 353 Query: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLR 358 L+ATD+AARG+DV+ +S VVN+++P ESYVHRIGRT RAG G A+ VE E LR Sbjct: 354 LVATDIAARGIDVDNVSHVVNFELPNVPESYVHRIGRTARAGAEGVAISLVEPSELPYLR 413 Query: 359 NIE 361 +IE Sbjct: 414 DIE 416 >UniRef50_A3WBD4 DNA and RNA helicase n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WBD4_9SPHN Length = 497 Score = 292 bits (748), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 152/359 (42%), Positives = 225/359 (62%), Gaps = 4/359 (1%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 TFADLGL +L+A+ D GY +P+ IQAE IP +L +D++G+AQTG+GKTA+F LP++ Sbjct: 37 TFADLGLSPELLKAVEDAGYTEPTAIQAEAIPAVLMMKDLIGIAQTGTGKTASFVLPMID 96 Query: 67 NLDPELK---APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 + + P+ L+L PTRELA QVAE + + + + L GG + QL+ L Sbjct: 97 VMAAGRRRALMPRSLILEPTRELAAQVAENFEKYGAN-HDLKMALLIGGVQMGDQLKTLD 155 Query: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183 +G +++ TPGRL+D +RG + L+ LV+DEAD ML MGFI D+E I ++PE QT Sbjct: 156 EGVDVLIATPGRLMDLFERGKILLNGCELLVIDEADRMLDMGFIPDIEFICDKLPETRQT 215 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAE 243 LFSATMP I ++ ++F+ P+ + + TT DI+ V +K + L L + Sbjct: 216 MLFSATMPAPIEKLAKKFLSNPKRIETTRAATTNKDITAFKVPVKARQKRDTLEWLLAND 275 Query: 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 303 + AIIF K E+ + L+R G+ S ++GDM+Q+ R + L+R K G ++IL+A+D Sbjct: 276 QVETAIIFANRKTTVRELNKHLQRQGFASGEIHGDMDQSSRLKELDRFKSGDVNILVASD 335 Query: 304 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 VAARGLD++ +S V N+D P + YVHRIGRTGRAG GRA V + + + N+E+ Sbjct: 336 VAARGLDIKGVSHVFNFDTPWHPDDYVHRIGRTGRAGAKGRAFTLVADEDAEAIANVEK 394 >UniRef50_B7VQT9 ATP-dependent RNA helicase n=15 Tax=Bacteria RepID=B7VQT9_VIBSL Length = 523 Score = 292 bits (747), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 155/386 (40%), Positives = 237/386 (61%), Gaps = 16/386 (4%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +F LGL PIL+A+ GY+KPSPIQ + +P +L G+DV+ AQTG+GKTA F+LP+L+ Sbjct: 2 SFTSLGLSEPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPILE 61 Query: 67 NLD--PELKAPQI--LVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 L P ++ Q+ LVL PTRELA QV ++ + ++ + V ++GG + + Q++ L Sbjct: 62 MLSKGPRVRQNQVRALVLTPTRELAAQVNGSVVKYGINLPLTSTV-VFGGVKINPQMQKL 120 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 R+G ++V TPGRLLD + + +L LVLDEAD ML MGFI D+ I+A +P+ Q Sbjct: 121 RKGSDVLVATPGRLLDLYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRKILAFLPKKRQ 180 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 LFSAT + IR + + + P E+ + + +T P + QS + V +K L + ++ Sbjct: 181 NLLFSATFSDDIRSLAKGLVNNPVEISVSPANSTAPTVEQSIYPVDKKKKAPMLAKLIKD 240 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 D+ ++F +TK+ ++A LE SA ++G+ +Q R + LE K G++ +L+AT Sbjct: 241 NDWRQVLVFSKTKHGANKLARFLEEQDITSAPIHGNKSQGARTKALENFKTGKVRVLVAT 300 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 D+AARG+D+ ++ VVN+D+P SE YVHRIGRTGRAG G+A+ V E L IER Sbjct: 301 DIAARGIDIPQLPQVVNFDLPNVSEDYVHRIGRTGRAGEVGKAISLVCADEVGELFGIER 360 Query: 363 TMKLTIPEVELPNAELLGKRRLEKFA 388 ++ ++L +R LE FA Sbjct: 361 LIQ-----------QVLERRELEGFA 375 >UniRef50_Q58083 Probable ATP-dependent RNA helicase MJ0669 n=29 Tax=cellular organisms RepID=H669_METJA Length = 367 Score = 292 bits (747), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 154/368 (41%), Positives = 236/368 (64%), Gaps = 9/368 (2%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGR-DVLGMAQTGSGKTAAFSLPLL 65 F +L L IL A+ + G+EKP+ IQ + IP LN +++ A+TGSGKTA+F++PL+ Sbjct: 7 NFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLI 66 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 + L E + ++L PTRELA+QVA+ + K + + + +YGG+ Q++AL+ Sbjct: 67 E-LVNENNGIEAIILTPTRELAIQVADEIESL-KGNKNLKIAKIYGGKAIYPQIKALKNA 124 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 IVVGTPGR+LDH+ RGTL+L + +LDEADEML MGFI+DVE I+ + + L Sbjct: 125 -NIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILL 183 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSATMP I + +++M + ++ + +I QSY V + EAL R L+ ++F Sbjct: 184 FSATMPREILNLAKKYMGDYSFIKAK----INANIEQSYVEVNENERFEALCRLLKNKEF 239 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 ++F +TK T E+A L G+ + A++GD++Q+ RE+ + K ++ ILIATDV Sbjct: 240 -YGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVM 298 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 +RG+DV ++ V+NY +P + ESY+HRIGRTGRAG+ G+A+ + RE + LR IER MK Sbjct: 299 SRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMK 358 Query: 366 LTIPEVEL 373 L I +++ Sbjct: 359 LKIKKLKF 366 >UniRef50_Q30SZ2 DEAD/DEAH box helicase-like protein n=2 Tax=Campylobacterales RepID=Q30SZ2_SULDN Length = 432 Score = 292 bits (747), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 151/369 (40%), Positives = 238/369 (64%), Gaps = 8/369 (2%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +F LG+ P+L A+ DLGYEKP+ IQ IP +L DV AQTG+GKTAAF L +LQ Sbjct: 2 SFEKLGVIKPLLSAIKDLGYEKPTTIQTRAIPLILAKSDVFATAQTGTGKTAAFGLGMLQ 61 Query: 67 NL----DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 L D + +A + LV+APTREL++Q+ E + ++K+M G+N+ L GG+ + Q + L Sbjct: 62 RLRKTSDDKQRALRGLVIAPTRELSIQIYEDLQSYAKNM-GINIAVLVGGKDLESQQKIL 120 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 ++G IV+ TPGR+L+H+ +G L LS + VLDEAD ML MGF++++ I +P+ HQ Sbjct: 121 KEGVDIVIATPGRVLEHVDKG-LSLSHVEIFVLDEADRMLDMGFMKEIRRIHPILPKRHQ 179 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 T LFSAT + +R++++ + +P + +T I+Q + V +K L + + Sbjct: 180 TLLFSATFSDKVRKLSKLILTKPAFIETSKKNSTVDTINQVAYLVDTEKKAPLLAYIIGS 239 Query: 243 EDFDAAIIFVRTK-NATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 +F ++F RTK +A L V E L+++G ++GD QA R +TL K+G++ +L+A Sbjct: 240 RNFRQVLVFTRTKASADLLVVE-LKKDGLKCGIIHGDKTQANRLKTLNEFKEGKIKVLVA 298 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 TD+A+RGLD+E + V+NY++P E YVHR+GRTGRAGR G A+ ++ E+ +++IE Sbjct: 299 TDIASRGLDIEELPFVINYELPSIPEDYVHRVGRTGRAGRDGMAISLIDIYEKFDIKDIE 358 Query: 362 RTMKLTIPE 370 + + + IP+ Sbjct: 359 KLIGMKIPQ 367 >UniRef50_C4XQY7 ATP-dependent RNA helicase n=7 Tax=Deltaproteobacteria RepID=C4XQY7_DESMR Length = 496 Score = 291 bits (745), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 156/368 (42%), Positives = 227/368 (61%), Gaps = 9/368 (2%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +F L ++ + GYE P+PIQAE +PH++ G D++G+AQTG+GKTAAF LP+L Sbjct: 2 SFDSFCLHDSLIANIKRAGYETPTPIQAEAVPHVMEGHDLMGLAQTGTGKTAAFLLPILH 61 Query: 67 NL--DP-ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVA--LYGGQRYDVQLRA 121 L +P ++P+ L+LAPTRELA Q+ + DF MRG + A +YGG Q+RA Sbjct: 62 RLITNPARTRSPRTLILAPTRELAEQIFRSTLDF---MRGTRLRATVIYGGVGMFPQVRA 118 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 LRQG ++V PGRLLDHL +G + L LVLDEAD M MGF+ D++ I+A +P Sbjct: 119 LRQGVDVIVACPGRLLDHLNQGNVRFDGLETLVLDEADHMFDMGFLPDIKRILAALPAKR 178 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 QT LFSATMP AI + + +P VRI + + + + V +K L+ L Sbjct: 179 QTLLFSATMPPAISGLAAETLTDPVTVRI-GHLAPLSTVEHAIYPVSHNQKAPLLLHLLG 237 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 ++ I+F RTK+ +A+ L R+G+ + L G+++Q R+ ++ + G IL+A Sbjct: 238 EAGKESVIVFTRTKHRAKNLAQQLCRSGHKATCLQGNLSQRQRQIAMDGFRRGSFQILVA 297 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 TD+AARG+DV +++ VVN+DIP +E+Y HRIGRTGRA R G+A FV + ++R IE Sbjct: 298 TDIAARGIDVSQVAHVVNFDIPDTAEAYTHRIGRTGRAERDGQAHTFVTGEDMGMVRAIE 357 Query: 362 RTMKLTIP 369 MK +P Sbjct: 358 SHMKKPLP 365 >UniRef50_Q7UNV7 ATP-dependent RNA helicase n=3 Tax=Planctomycetaceae RepID=Q7UNV7_RHOBA Length = 452 Score = 291 bits (745), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 165/368 (44%), Positives = 223/368 (60%), Gaps = 9/368 (2%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +F +L L + A+ D G+ PSPIQA IPH LNG+DV+G A+TG+GKTAAFS+P+L+ Sbjct: 45 SFDELDLSPIMRRAVKDAGFTTPSPIQAALIPHALNGKDVIGQARTGTGKTAAFSIPILE 104 Query: 67 NLDP--ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGV--NVVALYGGQRYDVQLRAL 122 LD + + PQ +V+ PTRELA QVA + + RGV + L GG+ + QLR L Sbjct: 105 QLDSLEDCRDPQAIVIVPTRELADQVA---AEAERLARGVPTEIAVLSGGKNMNRQLRQL 161 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 G Q+VVGTPGR+ DHL+RGTL + + +VLDEAD ML +GF +E IM + P Q Sbjct: 162 ENGTQLVVGTPGRVHDHLQRGTLRTNNVWCVVLDEADRMLDIGFRPQIERIMRKCPRNRQ 221 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 T L SAT+P +RR+ +M EP + I Q Y+T+ K L L+ Sbjct: 222 TLLLSATLPPVVRRLAESYMHEPVVIDCCRDEMAVDTIEQRYFTIAQDDKVRLLESLLKR 281 Query: 243 EDFDAAIIFVRTKNATLEVAEALERN-GYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 E + AIIF RTK T + L G A++GD+ Q R++ L++L+DG L L+A Sbjct: 282 EKPEQAIIFCRTKRGTDRLHRKLSHEYGSACGAIHGDLQQRERDRVLQKLRDGNLKFLVA 341 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 TDV RG+D+ IS +VN+D+P D + YVHR+GRTGR GR G A FV E +L +IE Sbjct: 342 TDVVGRGIDISTISHIVNFDVPQDCDDYVHRVGRTGRMGRDGVAYTFVVPGEGDILTSIE 401 Query: 362 -RTMKLTI 368 R KL I Sbjct: 402 QRINKLLI 409 >UniRef50_D2L498 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L498_9DELT Length = 492 Score = 291 bits (745), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 155/370 (41%), Positives = 221/370 (59%), Gaps = 5/370 (1%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +F L A I E + LGYE P+PIQAE IPH+ GRD++G+AQTG+GKTAAF LP++ Sbjct: 2 SFDSFCLHATITENIKRLGYENPTPIQAEAIPHVTEGRDLMGLAQTGTGKTAAFLLPIIH 61 Query: 67 NL---DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 L E + + L+LAPTRELA Q+ A D + R + +YGG Q RALR Sbjct: 62 RLMTTKSEKRGVRALILAPTRELAEQIYRAGLDLGRGTR-LRAAVIYGGVGMFPQTRALR 120 Query: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183 QG I+V PGRLLDH+ +G + L LVLDEAD M MGF+ D++ I++ +P QT Sbjct: 121 QGVDIIVACPGRLLDHMNQGNVRFDALETLVLDEADHMFDMGFLPDIKRILSALPSERQT 180 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAE 243 LFSATMP AI + + +P VRI + + + + + +K L+ LE Sbjct: 181 LLFSATMPPAISGLAHETLTDPVTVRI-GHMAPLSTVEHAIYPISHTQKAPLLLHLLEEA 239 Query: 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 303 + I+F RTK+ +A L R+G+ + L G+++Q R+ ++ + G +L+ATD Sbjct: 240 GKQSVIVFTRTKHRAKNLALQLCRSGHKATCLQGNLSQRQRQIAMDGFRRGSFQVLVATD 299 Query: 304 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 363 +AARG+DV ++ VVN+DIP +E+Y HRIGRTGRA G+A FV + ++R IE Sbjct: 300 IAARGIDVSQVGHVVNFDIPDTAEAYTHRIGRTGRAEHEGQAHTFVTGEDMGMVRAIESH 359 Query: 364 MKLTIPEVEL 373 MK +P E+ Sbjct: 360 MKKPLPRREV 369 >UniRef50_UPI00016C5336 ATP-dependent RNA helicase n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C5336 Length = 523 Score = 291 bits (744), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 161/364 (44%), Positives = 224/364 (61%), Gaps = 2/364 (0%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 FADL L P+++A+ GY+ P+PIQ IP L G+DV+G AQTG+GKTAAF +P L Sbjct: 88 FADLKLMRPLMDAITAAGYKNPTPIQENVIPPALRGKDVIGQAQTGTGKTAAFLIPFLNR 147 Query: 68 LDPE-LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 P LK P +V+ PTRELA+Q+A + R V +YGG QL L +G Sbjct: 148 WRPHTLKGPIGVVMTPTRELALQIANEAEKLAPSKR-FRCVPVYGGTGMQRQLDGLTRGC 206 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 +VVGTPGR+LDHL+RG++ LS++ VLDEAD ML +GF +D+E I+ + P QT L Sbjct: 207 DLVVGTPGRMLDHLQRGSMSLSQVRYAVLDEADRMLDIGFRDDIERILKRCPSERQTLLM 266 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SAT+P++I+R+ R+M++P + + T I QSY+TV RK E L R +E E Sbjct: 267 SATVPDSIKRLVNRYMRDPVHLHMMPEKPTVDKIRQSYFTVDQDRKFELLKRVVEREKPR 326 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 +IFV K + L+R +A ++GD+ Q+ RE+ + + + LIATDV + Sbjct: 327 QCLIFVERKRWADNLYRDLKRAVPKAAVIHGDLPQSQREKIMAAFRTADIKYLIATDVMS 386 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RG+DV +S V+NYD+PMD E+YVHRIGRTGR G+ G A+ FV + L NIE + Sbjct: 387 RGIDVSGLSHVINYDLPMDIENYVHRIGRTGRIGKDGIAISFVLPEQGEHLTNIEMMINR 446 Query: 367 TIPE 370 I E Sbjct: 447 LIEE 450 >UniRef50_C6Q9Z2 DEAD/DEAH box helicase domain protein n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6Q9Z2_9RHIZ Length = 657 Score = 291 bits (744), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 160/364 (43%), Positives = 215/364 (59%), Gaps = 6/364 (1%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 F G P+ AL GY P+PIQ + +P L GRD+LGMA+TGSGKTA F LPLLQ Sbjct: 27 NFEAFGFAEPLSRALTQCGYVTPTPIQVQALPPQLEGRDLLGMAETGSGKTATFVLPLLQ 86 Query: 67 -----NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 N +P K LVLAPTRELA+Q+ + + +++MR V L GG Q+ A Sbjct: 87 KIASQNSEPAPKQVLALVLAPTRELAIQIDQEVASLARNMRIRRAVVL-GGVSKGPQINA 145 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 L++G ++V TPGRLLD + T DLS++ LVLDEAD M MGFI D++ I+A +PE Sbjct: 146 LKRGVHVLVATPGRLLDLINMRTCDLSRVETLVLDEADRMFDMGFIRDIKKIVAMLPEAR 205 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 +TALFSATMP I++ +KEP V + S I Q V K L L Sbjct: 206 RTALFSATMPVEIKKFAYDILKEPYRVDLSSKSVVVDRIDQKVMIVRTTEKQSRLHTILA 265 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 E I+F RTK VAE L G +++A +G+ Q R++ L G + +L+A Sbjct: 266 DEACKRVIVFTRTKRGADRVAERLGMAGISASAFHGNKAQNARQRALNDFMMGHIRVLVA 325 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 TD+AARG+DV I+ VVN+D+P+D E+YVHR+GRT R G +G A+ + ER+ + IE Sbjct: 326 TDIAARGIDVSNITHVVNFDMPLDPETYVHRVGRTARKGNSGIAISLCDPGERQEITAIE 385 Query: 362 RTMK 365 R MK Sbjct: 386 RMMK 389 >UniRef50_C8PWG8 Cold-shock DEAD box protein A homolog n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PWG8_9GAMM Length = 777 Score = 291 bits (744), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 170/403 (42%), Positives = 234/403 (58%), Gaps = 26/403 (6%) Query: 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 E F LGL +L+++ GY P+PIQA IP L GRD+L AQTGSGKTAAF LP+ Sbjct: 68 ENGFTALGLSGSLLKSIVATGYTTPTPIQARAIPAALEGRDLLLSAQTGSGKTAAFVLPI 127 Query: 65 LQNLDPELKAP--------------------QILVLAPTRELAVQVAEAMTDFSKHMRGV 104 L L EL+A Q L+L PTRELA QV +++ + M+ + Sbjct: 128 LHQLS-ELQAKEKAAEKTASGKRGRQQPKVVQALILTPTRELANQVQDSIRKYGSAMKDL 186 Query: 105 NVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRM 164 V L GG Y Q+RAL++G QI+V TPGRLLDH+ ++LS L+ LVLDEAD ML M Sbjct: 187 YSVPLVGGAAYSGQIRALKKGVQIIVATPGRLLDHINAQRVNLSDLTMLVLDEADRMLDM 246 Query: 165 GFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSY 224 GF +D+ I+ P QT + SAT + +I F K+P+ + I+ V T + Y Sbjct: 247 GFADDINAILEATPAHRQTIMSSATWDGPVGKIAESFTKDPERINIK--VETAHIDEKVY 304 Query: 225 WTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALR 284 + KN+ L + + + AIIF TK ++ EVAE L++ + + L+GD+ Q+ R Sbjct: 305 FCDNFDHKNKLLEQLICDPERGQAIIFTATKRSSEEVAERLQQWDHKACYLHGDLPQSKR 364 Query: 285 EQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGR 344 + + L+ G+ DI++ATDVAARGLD+ I+ V NYD+P E YVHRIGR+GRAGR G Sbjct: 365 NRIVSDLRSGKFDIVVATDVAARGLDLPNITHVFNYDLPRQVEDYVHRIGRSGRAGRTGI 424 Query: 345 ALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKF 387 A+ +RR NI R +K I E ++ E L R +EKF Sbjct: 425 AINLCSRDDRRQFGNIARYLKRDINEAQV---EGLEPRFVEKF 464 >UniRef50_P25888 ATP-dependent RNA helicase rhlE n=363 Tax=root RepID=RHLE_ECOLI Length = 454 Score = 291 bits (744), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 155/377 (41%), Positives = 228/377 (60%), Gaps = 7/377 (1%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +F LGL IL A+ + GY +P+PIQ + IP +L GRD++ AQTG+GKTA F+LPLLQ Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61 Query: 67 NL---DPELKA---PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 +L P K + L+L PTRELA Q+ E + D+SK++ + + ++GG + Q+ Sbjct: 62 HLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYL-NIRSLVVFGGVSINPQMM 120 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 LR G ++V TPGRLLD + + L ++ LVLDEAD ML MGFI D+ ++ ++P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 Q LFSAT + I+ + + + P E+ + T ++Q V RK E L + Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMI 240 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 ++ ++F RTK+ +AE L ++G SAA++G+ +Q R + L K G + +L+ Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV 300 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATD+AARGLD+E + VVNY++P E YVHRIGRTGRA G AL V E +LLR+I Sbjct: 301 ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI 360 Query: 361 ERTMKLTIPEVELPNAE 377 E+ +K IP + +P E Sbjct: 361 EKLLKKEIPRIAIPGYE 377 >UniRef50_C1D891 Putative ATP-dependent RNA helicase protein n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D891_LARHH Length = 520 Score = 291 bits (744), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 166/372 (44%), Positives = 228/372 (61%), Gaps = 7/372 (1%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 FA LGL A ++ AL P+P+QAE +P LL+GRD++ AQTG+GKTAAF LP L Sbjct: 6 FAALGLDARLVHALEQHNITTPTPVQAEALPLLLSGRDLMASAQTGTGKTAAFLLPALSR 65 Query: 68 LDPE----LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 L E + P+ILVLAPTREL QVA+A +FS + VNV ++ GG + Q + L Sbjct: 66 LLVEPVARSRGPRILVLAPTRELVQQVAKAAQEFSTKIPRVNVASVIGGTSFRTQNQMLT 125 Query: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183 + +++V TPGRL+D ++ G +D S+L LVLDEAD ML MGF EDV I +Q+P+ QT Sbjct: 126 RPIEVMVATPGRLMDQMRSGRIDFSRLEMLVLDEADRMLDMGFSEDVMEIASQLPKARQT 185 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVR-FLEA 242 A F+ATM + + EP ++ I + +I Q V + LVR L Sbjct: 186 AFFTATMTRRVLDFADELLTEPAKIEIAAQTAKHENIEQQAIFVDDIDHKRRLVRHILSQ 245 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 D AI+FV TK +A+ L +G + AL+GDM Q R +TL RL+ G+ ++L+AT Sbjct: 246 PDVKQAIVFVATKRDCDTLADELIVDGIRADALHGDMQQRDRTRTLTRLRSGQTEVLVAT 305 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 DVAARG+DV IS V+N+D+P +E YVHR+GRTGRAG G A+ V ++ L+ IER Sbjct: 306 DVAARGIDVAGISHVINFDLPRFAEDYVHRVGRTGRAGATGTAVSLVGRQDAFPLKKIER 365 Query: 363 TM--KLTIPEVE 372 KL + E+E Sbjct: 366 FTGQKLIVTEIE 377 >UniRef50_D2PLC1 DEAD/DEAH box helicase domain protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PLC1_9ACTO Length = 815 Score = 290 bits (743), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 161/362 (44%), Positives = 226/362 (62%), Gaps = 13/362 (3%) Query: 17 ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ-NLDP----- 70 I +AL+ + +P PIQ +P L G D++G A+TG+GKT F +PLLQ + P Sbjct: 5 ICDALDRVNIVEPFPIQEMTLPVALMGTDLIGQARTGTGKTLGFGIPLLQRTISPGEPDY 64 Query: 71 -ELKAP---QILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 EL AP Q LV+ PTREL +QVA+ +T S +R V ++ +YGG Y+ QL L+ G Sbjct: 65 EELAAPGKPQALVVTPTRELTIQVAKDLTTAST-VRTVRILTIYGGVAYEPQLEMLKSGV 123 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 +VVGTPGRLLD RG LDLS + LVLDEADEML +GF+ DVE I+ + PE QT LF Sbjct: 124 DVVVGTPGRLLDLANRGVLDLSHIKVLVLDEADEMLDLGFLPDVERILRKTPELRQTMLF 183 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTR--PDISQSYWTVWGMRKNEALVRFLEAED 244 SATMP A+ + R M+ P +R +S T+ P +Q + + K E + R L+AED Sbjct: 184 SATMPSAVIGLARTHMRHPLNIRAESHEDTQMVPTTAQFVYRAHDLDKPEVVARILQAED 243 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 +IF RTK + + L G+ +AA++GD+NQ RE+ L R + ++D+LI TDV Sbjct: 244 RGRVMIFCRTKREAGRLTDDLADRGFKAAAIHGDLNQQARERALTRFRGDKIDVLICTDV 303 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 AARG+DVE ++ V+N P D ++Y+HRIGRTGRAG +G A+ FV+ + + I + + Sbjct: 304 AARGIDVEGVTHVINNTCPEDEKAYIHRIGRTGRAGASGIAVTFVDWADVTRWKTINKAL 363 Query: 365 KL 366 L Sbjct: 364 DL 365 >UniRef50_D2QGG1 DEAD/DEAH box helicase domain protein n=2 Tax=Bacteria RepID=D2QGG1_9SPHI Length = 485 Score = 290 bits (742), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 149/372 (40%), Positives = 230/372 (61%), Gaps = 8/372 (2%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F++L L PIL+AL + GY P+PIQ + IP LL+ RD+LG AQTG+GKTAAF++P+LQ Sbjct: 3 FSELSLIDPILKALTEEGYTNPTPIQEKAIPILLSRRDLLGCAQTGTGKTAAFAIPILQL 62 Query: 68 LDPELKAP-------QILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 L E + L+L PTRELA+Q+AE+ T + +H+ N V ++GG Q+ Sbjct: 63 LSEERSKSTGGPRRIKTLILTPTRELAIQIAESFTAYGRHLNIRNTV-IFGGVSQHSQVN 121 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 L+ G +++ TPGRLLD + +G + L + VLDEAD ML MGFI DV+ ++ ++P Sbjct: 122 TLKAGVDVLIATPGRLLDLMNQGFISLRDVQFFVLDEADRMLDMGFIHDVKKVITKLPTH 181 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 Q+ FSATMP + ++ + P +V + +T I Q+ + V K + LV L Sbjct: 182 RQSLFFSATMPPDVAKLADTILNNPAKVEVTPVSSTADTIEQAMYFVGKEDKRKLLVHIL 241 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 + ++ +A++F RTK+ +V + L + G + A++G+ +Q R++ L K +L+ Sbjct: 242 DDKNIKSALVFARTKHGADKVVKDLLKAGIGAEAIHGNKSQNARQRALSNFKSRETRVLV 301 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATD+AARG+DV+ +S V+NY++P E+YVHRIGRTGRAG G AL F + E LR+I Sbjct: 302 ATDIAARGIDVDELSHVINYELPNIPETYVHRIGRTGRAGHDGIALSFCDAEETEYLRDI 361 Query: 361 ERTMKLTIPEVE 372 + + +P ++ Sbjct: 362 HKLIGKRVPVID 373 >UniRef50_Q6A841 Putative ATP-dependent RNA helicase n=2 Tax=Propionibacterium acnes RepID=Q6A841_PROAC Length = 561 Score = 290 bits (742), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 161/377 (42%), Positives = 233/377 (61%), Gaps = 13/377 (3%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 T+FADLG++ I +AL +G P PIQA IP + G D++G A+TG+GKT AF + +L Sbjct: 53 TSFADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITIL 112 Query: 66 QNLD-------PELKA---PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRY 115 + EL PQ LV+ PTRELA+QV++ ++ + +RG V+ +YGG Y Sbjct: 113 LRITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDISTAAS-VRGARVLTVYGGVGY 171 Query: 116 DVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMA 175 + Q+ AL+ G +VVGTPGRLLD +R LDLS + +VLDEADEML +GF+ DVE ++ Sbjct: 172 ESQIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIG 231 Query: 176 QIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVT--TRPDISQSYWTVWGMRKN 233 + P QT LFSATMP I + R + P VR + + T T PD Q + + K Sbjct: 232 RTPASRQTMLFSATMPAPIMALARSQLHRPVHVRAEGADTQATVPDTQQFVYQAHPLDKI 291 Query: 234 EALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKD 293 E + R L+A D + IIF RTK A +++ L+ G+ + A++GD+ Q RE+ L++ + Sbjct: 292 EIIGRILQANDVEKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRH 351 Query: 294 GRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRE 353 G IL+ATDVAARG+DV +S V+N++ P D ++YVHRIGRTGRAG G A+ V+ + Sbjct: 352 GDATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGVAVTLVDWAD 411 Query: 354 RRLLRNIERTMKLTIPE 370 + I + + L + E Sbjct: 412 VTRWKLINKALNLELSE 428 >UniRef50_A9KIB7 DEAD/DEAH box helicase domain protein n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KIB7_CLOPH Length = 514 Score = 290 bits (741), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 145/365 (39%), Positives = 224/365 (61%), Gaps = 2/365 (0%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F ++ L P+L+A+ + G+ +PSPIQ + IP +L GRD+LG AQTG+GKTAAF+LP+LQ+ Sbjct: 3 FNEMNLIKPLLQAIKEEGFIEPSPIQKKTIPLVLEGRDILGCAQTGTGKTAAFALPILQS 62 Query: 68 LDP-ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 L E + L++ PTRELA+Q+ E+ F K+ + +YGG +Q+ +L+ G Sbjct: 63 LSKGEGSGVRALIITPTRELAIQIYESFECFGKYT-SLKQSVIYGGVGQSLQVNSLKAGI 121 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 I++ TPGRL D + +G + L + VLDEAD+ML MGF+ D++ ++ +P+ QT LF Sbjct: 122 DILIATPGRLNDLIGQGYITLDAIEMFVLDEADQMLDMGFLNDIKKVIKLLPKTRQTLLF 181 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SATMP+ I + + P+ ++I +T I QS + V + K L ++ Sbjct: 182 SATMPKEIESLATNLLNNPEIIKISPVTSTVDSIEQSVYFVDRLNKISLLTSLIKEHKMS 241 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 ++F +TK+ VA+ L + + A++G Q R+ L K+G++ +L+ATD+AA Sbjct: 242 RVLVFTKTKHGADRVADKLNKAKVKTQAIHGGKGQNARQTALSDFKEGKIKVLVATDIAA 301 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RG+D+ +S VVNYDIP +E Y+HRIGRTGRAG G A+ + LR IE+ + + Sbjct: 302 RGIDISELSYVVNYDIPNQAEIYIHRIGRTGRAGLGGNAINLCNIDDMDYLREIEKHIGM 361 Query: 367 TIPEV 371 IPEV Sbjct: 362 VIPEV 366 >UniRef50_D2RII4 DEAD/DEAH box helicase domain protein n=2 Tax=Acidaminococcus RepID=D2RII4_ACIFE Length = 417 Score = 290 bits (741), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 151/361 (41%), Positives = 222/361 (61%), Gaps = 1/361 (0%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 FA L + ++E L+ G + P+P+Q IP LLNGRDV+ AQTG GKT +F +PL Sbjct: 5 FAQLKVDETMVEKLHRTGKDIPTPVQERAIPALLNGRDVIARAQTGVGKTLSFVIPLFDK 64 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 +DP+ + Q L+L+PTRELA Q A + G+ + + GG+ ++ + R + Q Sbjct: 65 VDPQKEFVQALILSPTRELAQQTAGEIRKLEGDT-GIRTLTVSGGRDFEEEKRKIGHRAQ 123 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 ++VGTPGRLLDHL++G L + LVLDE DEMLR GF ED+ET+++ +P+ HQT + S Sbjct: 124 VLVGTPGRLLDHLRKGNTSLGGVKYLVLDEVDEMLRQGFGEDIETLLSLMPQPHQTMMCS 183 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 AT+ E +R++ R+ P + I +T I Q V K +AL + + Sbjct: 184 ATLDEEVRKLGRQLTTNPLVIDIAPKESTASTIHQICIKVSEDHKADALASLIRRYNPFL 243 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 ++F +K +E+++ L G+N L+GDM+Q R Q +E + +L IL+A+D+AAR Sbjct: 244 MLVFCCSKERAIELSDWLYGEGFNVDVLHGDMSQTKRRQVMENFRKAKLQILVASDIAAR 303 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 GLDVE I+ VVNYDIP D + YVHRIGRTGRAG G A+ F E R L+N+E+ + +T Sbjct: 304 GLDVEGITQVVNYDIPHDPDWYVHRIGRTGRAGSEGTAITFYTADETRWLQNLEKKLDIT 363 Query: 368 I 368 + Sbjct: 364 L 364 >UniRef50_A7K1S7 ATP-dependent RNA helicase n=13 Tax=Vibrionales RepID=A7K1S7_VIBSE Length = 416 Score = 290 bits (741), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 149/372 (40%), Positives = 227/372 (61%), Gaps = 10/372 (2%) Query: 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 + TFADLGL ++E L L Y +P+PIQ+ IP++L G+D++G A TGSGKTAAFSLP+ Sbjct: 7 QATFADLGLIPTLVERLEALEYSQPTPIQSHTIPYILEGKDIVGGANTGSGKTAAFSLPI 66 Query: 65 LQNLDPELKAPQ-------ILVLAPTRELAVQVAEAMTDFSKHMR-GVNVVALYGGQRYD 116 LQ + + + L+L PTRELA QVA + +S H+R + VA++GG + Sbjct: 67 LQKIVQQDETNHRRGNFVSHLILVPTRELASQVAYNVKSYSYHLRDKIKTVAVFGGVSVN 126 Query: 117 VQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQ 176 Q+ ALR G I+V TPGRLLD + + L ++ LVLDEAD ML +GF E++ I+A Sbjct: 127 PQMLALRGGCDIIVATPGRLLDLVSSNAIKLDQVKTLVLDEADRMLSLGFTEELNKILAL 186 Query: 177 IPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEAL 236 +PE QT LFSAT P+ + +++ +++P EV++QS+ + + Q ++V K L Sbjct: 187 LPEKKQTLLFSATFPDKVTTLSQHLLRDPVEVQLQSAEAS--TLVQRVFSVNKGEKTAVL 244 Query: 237 VRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRL 296 ++ + +IFV KNA +A+ L + G + +GD Q R + L+ K G + Sbjct: 245 AHLIKQHQWRQTLIFVNAKNACNHLAQKLSKRGITAEVFHGDKGQGARTRVLDGFKSGEI 304 Query: 297 DILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRL 356 +LIATD+AARGLD+E++ +V+N+D+P Y+HRIGR+GRAG G L ++ + Sbjct: 305 QVLIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLGLSLIDYDDYHH 364 Query: 357 LRNIERTMKLTI 368 + IE+ K + Sbjct: 365 FKVIEKKNKFQL 376 >UniRef50_C6ATS7 DEAD/DEAH box helicase domain protein n=15 Tax=Alphaproteobacteria RepID=C6ATS7_RHILS Length = 580 Score = 290 bits (741), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 161/370 (43%), Positives = 228/370 (61%), Gaps = 9/370 (2%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 T F LG+ PI+ L LG E P+PIQ IP LL GRD++G+AQTG+GKTAAF LPL+ Sbjct: 23 TNFESLGVSKPIIATLFQLGIETPTPIQEHSIPLLLEGRDLIGLAQTGTGKTAAFGLPLI 82 Query: 66 QNL-----DPELKAPQILVLAPTRELAVQVAEAMTDF-SKHMRGVNVVALYGGQRYDVQL 119 + L P+ + + L+LAPTREL Q+AE++ F K +NVV GG + Q Sbjct: 83 EKLLADERRPDNRTTRTLILAPTRELVNQIAESLKKFIRKSSLRINVVV--GGVSINKQQ 140 Query: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179 L +G I+V TPGRLLD + R + L+ + LVLDEAD+ML +GF+ D+ I +P+ Sbjct: 141 LQLEKGTDILVATPGRLLDLINRRAITLTAVRYLVLDEADQMLDLGFVHDLRKIAKMVPK 200 Query: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239 QT LFSATMP+AI + ++ +P +V + + Q V G L+R Sbjct: 201 KRQTMLFSATMPKAIADLAGEYLVDPVKVEVTPPGKAADKVEQYVHFVAGKNDKTELLRK 260 Query: 240 LEAEDFDA-AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDI 298 E+ D A++F+RTK+ ++ + LE GY+ A+++G+ +Q RE+ L+ +DG + Sbjct: 261 SLTENPDGRAMVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIKT 320 Query: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLR 358 LIATDVAARG+D+ +S V NYD+P ++YVHRIGRT RAGR G A+ F E +LLR Sbjct: 321 LIATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEAKLLR 380 Query: 359 NIERTMKLTI 368 +IER M + I Sbjct: 381 DIERLMGIDI 390 >UniRef50_B8J3P1 DEAD/DEAH box helicase domain protein n=3 Tax=Desulfovibrio RepID=B8J3P1_DESDA Length = 562 Score = 290 bits (741), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 161/355 (45%), Positives = 220/355 (61%), Gaps = 4/355 (1%) Query: 25 GYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTR 84 G++ P+Q+ +P+LL GRD++ ++TGSGKT + LP+L L +LKAPQ LVLAPTR Sbjct: 61 GWQGLMPVQSLALPYLLEGRDIMVQSRTGSGKTGCYLLPMLPRLSADLKAPQALVLAPTR 120 Query: 85 ELAVQVA-EAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRG 143 ELAVQV EA F G+ VA+YGG Y Q+ ALR G Q++VGTPGR+LDHL R Sbjct: 121 ELAVQVEREAAVLFEG--TGIVTVAVYGGVGYKKQMDALRNGAQLIVGTPGRVLDHLLRR 178 Query: 144 TLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH-QTALFSATMPEAIRRITRRFM 202 TLDL L LV DEAD ML +GF D++ I +P T LFSAT P + +++ FM Sbjct: 179 TLDLGDLRELVFDEADRMLSIGFYPDMKEIQRYLPRRRIHTCLFSATYPPHVLKLSGEFM 238 Query: 203 KEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVA 262 EP + + ++ + V M K+ ALVR LE E+ +AIIF TK+ VA Sbjct: 239 AEPAMLSLSQKEVHVAEVQHLFCEVKPMDKDRALVRLLETENPASAIIFCNTKSNVHYVA 298 Query: 263 EALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDI 322 L+ GYN+ L+ D++Q+ RE LE+++ G+L L+ATDVAARG+D+ +S V Y+ Sbjct: 299 GVLQGFGYNADELSADLSQSRREAVLEKIRQGKLQYLVATDVAARGIDIPELSHVFLYEP 358 Query: 323 PMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAE 377 P D ESY+HR GRTGRAG AG + V+ +R L I + K+ + + LP E Sbjct: 359 PEDHESYIHRAGRTGRAGAAGTVISLVDVMQRMELDRIAKHYKIGLIPLPLPTDE 413 >UniRef50_D1B384 DEAD/DEAH box helicase domain protein n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B384_SULD5 Length = 436 Score = 289 bits (739), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 151/390 (38%), Positives = 238/390 (61%), Gaps = 9/390 (2%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 F LGL PI +A+ +LGY KP+P+Q + IP +L G+DV+ AQTG+GKTAA++LPLL Sbjct: 2 VFEKLGLSEPIRDAVRELGYTKPTPVQNKVIPLVLEGKDVMATAQTGTGKTAAYALPLLH 61 Query: 67 NLDPEL------KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 L+ + K + L+L PTRELA QV ++ + K++ ++ A+YGG ++ Q + Sbjct: 62 ILNKKTQKSTTSKVVRALILVPTRELASQVGASVQAYGKNV-PLSSAAIYGGVKFTPQAK 120 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 L +G I++ TPGRLL+H+K G +DLS++ +V DEAD +L MGF ++V+T++ P+ Sbjct: 121 KLDKGIDILIATPGRLLEHVKLGNVDLSRVEIVVFDEADRILDMGFWDEVQTLLGLFPKK 180 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 QT LFS + ++++R++ +K+P V I + + Q+ + V RK E L + Sbjct: 181 RQTLLFSVGLSKSVKRLSEVSLKKPVTVAINNQGDFAKKVEQTLYLVDKERKCELLSFMI 240 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 ++ ++F +TK + EV E L +G + L+GD + R Q + K+ + +L+ Sbjct: 241 GTHNWHQVLVFTKTKQSADEVGEYLNASGLKTLVLHGDKAHSKRTQAIHAFKENAIRVLV 300 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATD+A+RGLD+E + V+NY++P D+E Y HR GRTGRAG+ GRA+ V E+ + I Sbjct: 301 ATDIASRGLDIEDLPYVINYELPGDAEDYTHRAGRTGRAGKEGRAISLVAQEEKNKFKEI 360 Query: 361 ERTMKLTIPEVELPNAELLGKRRLEKFAAK 390 E+ +K TI P E K +EK A K Sbjct: 361 EKILKYTIKTEFYPGFE--TKEWVEKEAKK 388 >UniRef50_C1I992 DEAD/DEAH box helicase domain-containing protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I992_9CLOT Length = 370 Score = 288 bits (737), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 145/367 (39%), Positives = 227/367 (61%), Gaps = 3/367 (0%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F DL + +++ L G P+ +Q IP ++N DV+G ++TGSGKT AF LP+LQ Sbjct: 3 FKDLKINTKLVDELKKNGITTPTKVQVNVIPEIINKNDVIGKSKTGSGKTLAFLLPILQI 62 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 +D K+ ++L+L+PTRELA+Q+ E F ++ + ++A YGG+ QL+ L +G Sbjct: 63 IDSNSKSTEVLILSPTRELAIQITEEANKF--NINDIGILAAYGGKDVGSQLKKLNKGIN 120 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 +++ TPGRLLDHL+R +++LSKL+ +V+DEAD+ML MGF ++E IM+ P+ QT FS Sbjct: 121 LIIATPGRLLDHLERKSINLSKLNTVVIDEADQMLLMGFRNEIEKIMSYAPKKLQTLCFS 180 Query: 188 ATMPEAIRRITRRFMKEPQEVRI-QSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 AT+ ++++ R+M P + I ++ + P+I Q K +ALV+ LE ++ Sbjct: 181 ATIDSKVKKLAYRYMNNPTIIDITENEESEIPNIKQEVVKTTDRWKVDALVKILEEDNPF 240 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 +IIF RTK E+ L G +A ++ D+ Q RE+ ++ +D + LIATDVA+ Sbjct: 241 MSIIFCRTKRRADELEVKLAAKGIKAAKIHSDVPQNKREKIMKSFRDCEIQFLIATDVAS 300 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RG+DV ++ + NYD P ESY+HRIGRT RAG +G L + + +L IE ++ Sbjct: 301 RGIDVTGVTHIYNYDAPESVESYIHRIGRTARAGDSGYTCLITDPKNYTILEEIENYLQY 360 Query: 367 TIPEVEL 373 TIPE E+ Sbjct: 361 TIPEREV 367 >UniRef50_C7H231 ATP-dependent RNA helicase DeaD n=4 Tax=Ruminococcaceae RepID=C7H231_9FIRM Length = 395 Score = 286 bits (733), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 149/366 (40%), Positives = 223/366 (60%), Gaps = 5/366 (1%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 +++L I +A+ +G+ + + IQ + IP +L GRDV+ A TG+GKT AF +P+ ++ Sbjct: 3 YSELQCSEAIHKAVERMGFAEMTEIQEKTIPVMLAGRDVIAKAPTGTGKTCAFGIPVAEH 62 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 +DPE K PQ +++APTRELA Q+AE +T+ + M V V +YGG + Q R L +G Q Sbjct: 63 IDPEKKYPQAVIMAPTRELAQQIAEELTELTYFMPEVQVACVYGGANMEKQARRLAEGCQ 122 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 IVV TPGRL+DH K ++DL+ ++ +VLDEADEML MGF +DV I+ + ++FS Sbjct: 123 IVVATPGRLMDHYKHHSIDLAHVTQVVLDEADEMLNMGFYKDVRHIIELMKARKSLSMFS 182 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 AT+ + I + +E+ +Q ++P I+Q G K L + + E + Sbjct: 183 ATISREVMDIGWLYQNNAEEITVQPREESQPKITQYMLETSGRNKLSDLAQIIIGEGYKR 242 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 ++F TK T +A L R G++ L+GD++Q R Q ++ +DGRL IL+ATDVAAR Sbjct: 243 VMVFCDTKFNTATLANQLARLGFSVDCLHGDLSQKERNQIMQNFRDGRLAILVATDVAAR 302 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERR----LLRNIERT 363 G+DV + V+NYD+P D+E Y HRIGRTGRA + G + LF E++ LLR + R Sbjct: 303 GIDVSDVDAVINYDVPGDNEHYTHRIGRTGRAKKEGVSYLFYVPEEKKRVQELLR-LTRN 361 Query: 364 MKLTIP 369 L P Sbjct: 362 TDLCTP 367 >UniRef50_C1D673 RhlE3 n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D673_LARHH Length = 582 Score = 286 bits (732), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 159/377 (42%), Positives = 223/377 (59%), Gaps = 7/377 (1%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +FADL L P+L A+ + GY +P+PIQ E I +L GRD++ AQTG+GKTA F+LPLLQ Sbjct: 5 SFADLQLVDPLLRAITEAGYTEPTPIQREAIAPVLAGRDLMAAAQTGTGKTAGFALPLLQ 64 Query: 67 NLDPELKAPQI------LVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 L P LVL PTRELA QV E++ H+ ++V ++GG R Q+ Sbjct: 65 RLAATHPHPHPAGRPRGLVLTPTRELAAQVGESIATLGTHLPLTSLV-IFGGVRVKPQIE 123 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 AL Q I++ TPGRL+D K+ +DLS + LVLDEAD ML MGFI DV ++ +P Sbjct: 124 ALTQRVDILIATPGRLIDLAKQEAVDLSGVEILVLDEADRMLDMGFIRDVRKVLKLLPAE 183 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 Q LFSAT + I+ + F+ +PQ V + +T ++ V RK E L + Sbjct: 184 RQNLLFSATFNDDIKALADTFLHDPQLVEVSPPNSTTELVTHHVHLVDRNRKRELLTHLV 243 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 E+ + ++F RTK+ +AE L + G +AA++G+ +Q R + L KDG L +L+ Sbjct: 244 ESRQWQQVLVFTRTKHGANRLAEVLAKGGIPAAAIHGNKSQGARTRALSEFKDGSLRVLV 303 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATD+AARG+D+ + VVNY++P E YVHRIGRTGRAG G A+ V E +LL +I Sbjct: 304 ATDIAARGIDISELPQVVNYELPNVPEDYVHRIGRTGRAGSPGEAVSLVCVDELKLLADI 363 Query: 361 ERTMKLTIPEVELPNAE 377 E + IP+ P E Sbjct: 364 EAFIGRPIPQFTEPGFE 380 >UniRef50_D1BLQ6 DEAD/DEAH box helicase domain protein n=3 Tax=Veillonella RepID=D1BLQ6_VEIPT Length = 432 Score = 286 bits (731), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 143/362 (39%), Positives = 224/362 (61%), Gaps = 1/362 (0%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +F LG+ ++ AL G ++P+PIQ + IP + G DV+ AQTG+GKT AF LP+LQ Sbjct: 3 SFKSLGVCDELIIALQKQGIKEPTPIQEQSIPVVFKGNDVIAKAQTGTGKTLAFLLPILQ 62 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 + ++ Q+L++APTREL Q+++ + + V+++ L GG+ + QL+ L + P Sbjct: 63 RVHTDVHQEQVLIIAPTRELIKQISDEAKELGS-ILNVDILPLIGGKTIEAQLQQLGRRP 121 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 Q+++GTPGRLLDH KRG+L L + +VLDEAD+ML MGF+ D+E +++Q Q LF Sbjct: 122 QVILGTPGRLLDHAKRGSLHLDCIRRVVLDEADQMLHMGFLPDIENLISQTDANRQLLLF 181 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SAT+P+ IR + + +M +P V + T I Q + + K + L++ +E ++ Sbjct: 182 SATIPDKIRNLAKAYMSKPISVTAEGKHITLESIDQRVYMMNPEEKTQRLIKMIEDDNPF 241 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 AI+F + + ++ L G N A ++GD+ Q R Q L + IL+ATD+AA Sbjct: 242 LAIVFCNKREGAIRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQILVATDIAA 301 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RG+D+E I+ V NYD+P D + Y+HRIGRTGRAG +G A+ F ++ LR IER ++ Sbjct: 302 RGIDIEGITHVYNYDVPRDVDYYIHRIGRTGRAGNSGIAVTFATPQDEAWLRRIERAIQA 361 Query: 367 TI 368 T+ Sbjct: 362 TL 363 >UniRef50_A8H2J8 DEAD/DEAH box helicase domain protein n=34 Tax=Gammaproteobacteria RepID=A8H2J8_SHEPA Length = 442 Score = 286 bits (731), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 154/379 (40%), Positives = 229/379 (60%), Gaps = 13/379 (3%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F LGL +LE L L Y KP+ IQ+ IP +L+G+DVLG A+TGSGKTAAF+LP++Q Sbjct: 25 FTQLGLIPELLETLKLLSYTKPTAIQSHIIPAVLDGKDVLGGAKTGSGKTAAFALPIIQK 84 Query: 68 LDPELKAP--------QILVLAPTRELAVQVAEAMTDFSKHMR-GVNVVALYGGQRYDVQ 118 L +P LVL PTRELA QVA++ +S+ ++ + +A+YGG +VQ Sbjct: 85 LAK--ASPRKAGGNFVSCLVLVPTRELAQQVADSFMRYSQLIKPNLKTLAVYGGVSTNVQ 142 Query: 119 LRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP 178 +++LR G IVV TPGRL+D + L L + LVLDEAD ML +GF E++ ++A++P Sbjct: 143 MQSLRGGADIVVATPGRLIDLISSNALKLDNTTTLVLDEADRMLSLGFTEELNELLAKLP 202 Query: 179 EGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVR 238 + QT LFSAT PE +R +T + P EV++QSS + Q TV RK L + Sbjct: 203 KTKQTLLFSATFPEEVRELTDSLLNNPVEVQLQSS--EESTLVQRVITVNRNRKTALLAQ 260 Query: 239 FLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDI 298 ++ + +IF K + +A+ LE G + + D Q R + LE K G + + Sbjct: 261 LIKDNQWQQVLIFASAKYSCNRLAQKLENAGITAEVFHSDKGQGARNRVLEEFKSGEISV 320 Query: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLR 358 LIATD+AARG+D+E++ +V+N+++P Y+HRIGR+GRAG AG A+ + + E + + Sbjct: 321 LIATDIAARGIDIEKLPIVINFELPRSPVDYMHRIGRSGRAGEAGLAMSLISHDEYQHFK 380 Query: 359 NIERTMKLTIPEVELPNAE 377 IE+ KL + ++P E Sbjct: 381 LIEKKNKLRLEREQIPGFE 399 >UniRef50_B6R5V0 ATP-dependent rna helicase, dead/deah box family n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R5V0_9RHOB Length = 453 Score = 286 bits (731), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 153/372 (41%), Positives = 231/372 (62%), Gaps = 6/372 (1%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 T F LG+ P AL GY +P+PIQ IP++L+G+D+LG+AQTG+GKTAAF++PLL Sbjct: 2 TDFDKLGVAKPFQIALKSKGYSEPTPIQENAIPYILDGKDLLGLAQTGTGKTAAFAVPLL 61 Query: 66 QNL-----DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 Q L K+ + L+L PTRELA Q+ + + ++ + + + GG + Q Sbjct: 62 QRLLESRYRAAPKSVRSLILTPTRELADQITKNIKAYAGRTK-MYTSCVVGGVPFPPQFH 120 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 AL++G ++V TPGRLLD ++ + +L VLDEAD+ML +GFI ++E I +P+ Sbjct: 121 ALQRGLDVLVATPGRLLDLHRKNGVSFDELEIFVLDEADQMLDLGFIAELEEIAYLLPKK 180 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 QT FSATMP IR ++ RF+ P EV TT ++Q + K L L Sbjct: 181 RQTLFFSATMPREIRDLSERFLTNPVEVSTAPPATTVETVTQQIAHLEKDAKFPLLKELL 240 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 E ++ + A++F TK + +A L +G + A++GDM+QA R++TL++ K G+L L+ Sbjct: 241 EKDECERALVFTLTKKGSARLAARLNADGVPAEAIHGDMSQAERQKTLDKFKRGKLKTLV 300 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATDVAARG+DV IS V+N+D+P +E+YVHRIGRT RAG++G A+ F +R +LR I Sbjct: 301 ATDVAARGIDVSDISHVINFDMPNATENYVHRIGRTARAGKSGTAITFCLPEDRGMLRAI 360 Query: 361 ERTMKLTIPEVE 372 ++ + I E++ Sbjct: 361 QKLIGKKIAEMD 372 >UniRef50_D2LUR2 DEAD/DEAH box helicase domain protein n=3 Tax=Bacillus RepID=D2LUR2_BACS4 Length = 482 Score = 285 bits (730), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 147/372 (39%), Positives = 228/372 (61%), Gaps = 2/372 (0%) Query: 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 +T F +LGL I +A++ L Y + + +Q E +P L +D++ + TGSGKTAAF++P+ Sbjct: 3 KTQFTELGLSDVINKAIHALNYYELTDVQKEVLPLSLENKDLIVKSPTGSGKTAAFAIPI 62 Query: 65 LQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 + + + +PQ LVL PTRELA QV E + + ++ + +A+YG Q +D Q L+Q Sbjct: 63 CEQVTWDENSPQALVLTPTRELAAQVKEEFMNIGR-LKRIKALAIYGKQPFDRQKLELKQ 121 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ-T 183 +VVGTPGRLLDHL++GTL ++K+ LV+DEADEM GF + V++I+ + + T Sbjct: 122 KTHVVVGTPGRLLDHLQKGTLKMNKIKYLVIDEADEMFNRGFFDQVDSILKHLANYDKVT 181 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAE 243 +++SAT+ EA+ I+ RFM P ++ I+ ISQSY V K A+ E Sbjct: 182 SIYSATISEAVEHISTRFMINPIKINIERKQINAHPISQSYVLVNKNAKFSAIQDVTIVE 241 Query: 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 303 + D+ I+F T+ ++ + L Y+ ++G + Q R + K+G+ L+ T+ Sbjct: 242 NPDSCIVFCETQVNVDKLYKQLRDANYSCGKIHGGLPQKERFSVMNEFKEGKFRYLVTTN 301 Query: 304 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 363 +AARG+D+E ISLV+NYD+P+D E YVHR GRTGRAG G+A+ F+ ER L R IE Sbjct: 302 LAARGIDIESISLVINYDMPLDKEVYVHRTGRTGRAGNKGKAITFITPDERILFREIEDY 361 Query: 364 MKLTIPEVELPN 375 + IP + +P+ Sbjct: 362 IGYAIPPMNIPS 373 >UniRef50_A0RP33 Putative ATP-dependent RNA helicase RhlE n=2 Tax=Campylobacter fetus RepID=A0RP33_CAMFF Length = 624 Score = 285 bits (729), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 151/362 (41%), Positives = 222/362 (61%), Gaps = 6/362 (1%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F+D L + ILEAL +L Y+ P+ IQ IP ++ G+D+L A+TG+GKTAAF+LP+L+ Sbjct: 3 FSDFDLSSAILEALKELNYDAPTQIQQVAIPAIMQGKDILAGARTGTGKTAAFALPILEK 62 Query: 68 LDPE---LKAPQ--ILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 L + K PQ +LVL PTRELA QV + + ++K + + ++GG Q++AL Sbjct: 63 LSSKERNKKRPQTRVLVLVPTRELANQVTQNIKSYAKKL-PFKTLPVFGGVSSYPQIQAL 121 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 + G IVV TPGRLLD + L L + LV DEAD M MGFI D++ I+ +PE Q Sbjct: 122 KSGIDIVVATPGRLLDLALQNALSLEHIDTLVFDEADRMFDMGFIHDIKQIVKMLPEKRQ 181 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 LFSAT P + + +K+P ++I+ +T +I Q V +K E L Sbjct: 182 NLLFSATYPSEVMSLCNSMLKDPLRIQIEEQNSTALNIIQRVILVDRDKKMELLNEVFGV 241 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 E D A++F RTK + + + L G++ AAL+GD +Q++R +TLE+ K+G+ IL+AT Sbjct: 242 ESIDQALVFTRTKRSADKCSSYLHTLGFSVAALHGDKSQSVRSKTLEKFKNGKTKILVAT 301 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 D+AARGLD++ + V+N ++P E YVHRIGRTGRAG G A+ V E + L +IE+ Sbjct: 302 DIAARGLDIKELPFVINLELPNVPEDYVHRIGRTGRAGNDGVAISLVCVDEFKFLIDIEK 361 Query: 363 TM 364 + Sbjct: 362 LI 363 >UniRef50_C7PD17 DEAD/DEAH box helicase domain protein n=139 Tax=root RepID=C7PD17_CHIPD Length = 492 Score = 285 bits (728), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 149/378 (39%), Positives = 233/378 (61%), Gaps = 11/378 (2%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +F LGL P+L+AL++ GY P+PIQ + IPH+L+ RD+LG AQTG+GKTAAF++PLLQ Sbjct: 28 SFEQLGLIEPLLKALDNEGYTAPTPIQQQAIPHVLDTRDLLGCAQTGTGKTAAFAIPLLQ 87 Query: 67 NLDPELKAPQ--------ILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQ 118 + + +A Q L+L PTRELA+Q+ E+ T + K + + + ++GG Q Sbjct: 88 LMHQDQQAQQRKGLRNIKALILTPTRELAIQIQESFTAYGKFL-DLKSLVIFGGVSQHPQ 146 Query: 119 LRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP 178 AL++G I++ TPGRLLD + + + L + VLDEAD ML MGF+ DV+ ++ ++P Sbjct: 147 TEALKKGVDILIATPGRLLDLISQNYITLRDIKYFVLDEADRMLDMGFVHDVQRVIVKLP 206 Query: 179 EGHQTALFSATMPEAIRRITRRFMKE-PQEVRIQSSVTTRPDISQSYWTVWGMRKNEALV 237 E Q+ FSATMP I+ + + ++ P +V + +T I+QS + V K L+ Sbjct: 207 EQRQSLFFSATMPPEIQTLAKAILRNNPAKVEVTPVSSTAETITQSMYFVNKNDKRNLLL 266 Query: 238 RFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLD 297 L+ + ++F RTK+ V + L + + A++G+ +Q R++ L K + Sbjct: 267 HILKDKAIKTLLVFTRTKHGADRVVKDLHKAEITAEAIHGNKSQNARQRALNNFKSQQTR 326 Query: 298 ILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLL 357 +L+ATD+AARG+D++ ++ VVNY++P E+YVHRIGRTGRAG G A+ F E E+ L Sbjct: 327 VLVATDIAARGIDIDELTHVVNYELPNVPETYVHRIGRTGRAGADGIAISFCEPEEKAFL 386 Query: 358 RNIERTMKLTIP-EVELP 374 ++I + + IP E E P Sbjct: 387 KDILKLISREIPVETEHP 404 >UniRef50_C5TNR4 Dead/deah box helicase n=8 Tax=Neisseriaceae RepID=C5TNR4_NEIFL Length = 487 Score = 285 bits (728), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 153/362 (42%), Positives = 221/362 (61%), Gaps = 9/362 (2%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F+ LGL + ++ AL D GYE P+PIQA IP L G D+L AQTG+GKTAAF LP L+ Sbjct: 28 FSSLGLGSELVSALTDQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLEL 87 Query: 68 L--------DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119 L P + ++LVL PTRELA Q+ + + + K++ + V L+GG D Q Sbjct: 88 LKRYATSSTSPAMHPVRMLVLTPTRELADQIDQNVQAYIKNLPLRHTV-LFGGVNMDKQT 146 Query: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179 LR G +IVV T GRLLDH+K+ ++L+K+ +VLDEAD ML MGFI+D+ IM +P+ Sbjct: 147 ADLRAGCEIVVATVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPK 206 Query: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239 QT LFSAT IR++ + FM P+ V + + TT ++ Q V ++K L R Sbjct: 207 QRQTLLFSATFSPPIRKLAQDFMHTPEMVEVAAQNTTNANVEQHIIAVDALKKRSLLERL 266 Query: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299 + + I+F +TK + +V L R + +++GD +Q R +TL K+G L +L Sbjct: 267 IVDLHMNQVIVFCKTKQSVDQVTRDLVRRNIAAQSIHGDKSQQSRLETLNAFKEGTLRVL 326 Query: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359 +ATDVAARGLD+ + V+NY++P E YVHRIGRTGRAG G A+ ++ E+++ Sbjct: 327 VATDVAARGLDIAELPFVINYELPTQPEDYVHRIGRTGRAGADGVAISLMDKTEQKMFEA 386 Query: 360 IE 361 I+ Sbjct: 387 IK 388 >UniRef50_Q12QV2 DEAD/DEAH box helicase-like protein n=27 Tax=Gammaproteobacteria RepID=Q12QV2_SHEDO Length = 433 Score = 285 bits (728), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 151/384 (39%), Positives = 228/384 (59%), Gaps = 11/384 (2%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F IL A+ + GY+ +P+Q + IP + G DVL AQTG+GKTAAF+LP+LQ Sbjct: 3 FESFSFAPEILRAIAECGYQNMTPVQQQAIPAIRRGEDVLASAQTGTGKTAAFALPILQK 62 Query: 68 LDPELKAPQ-----ILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 + Q L+L PTRELA QVA+ ++ +SKHM ++V+ +YGG + Q + L Sbjct: 63 MHERPMTVQHSNARALILTPTRELAAQVADNISAYSKHM-NISVLTIYGGMKMATQAQKL 121 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 +QG I+V TPGRLL+H+ L LS + LVLDEAD ML MGF D++ I+ + + Q Sbjct: 122 KQGADIIVATPGRLLEHIVACNLSLSNVEFLVLDEADRMLDMGFSTDIQKILQAVNKKRQ 181 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 LFSAT A++++ + +P+ + TT +SQ + V RK E L + Sbjct: 182 NLLFSATFSTAVKKLANDMLDKPKIISADKQNTTAATVSQVVYPVEQRRKRELLSELIGT 241 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 +++ ++F T+ ++ L +G SA ++G+ Q R + L +G++ +L+AT Sbjct: 242 KNWQQVLVFTATRADADKLVTELNLDGIPSAVVHGEKAQGSRRRALREFIEGKVRVLVAT 301 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 +VAARGLD++ + VVNYD+P +E YVHRIGRTGRAG+ G A+ FV E R L +IE+ Sbjct: 302 EVAARGLDIQGLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEERTLADIEK 361 Query: 363 TM-----KLTIPEVELPNAELLGK 381 + ++T+P E+ + ELL K Sbjct: 362 LIGQKIRRITVPGYEVSSRELLLK 385 >UniRef50_A9NFK0 ATP-dependent RNA helicase, superfamily II n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NFK0_ACHLI Length = 448 Score = 284 bits (727), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 149/369 (40%), Positives = 233/369 (63%), Gaps = 6/369 (1%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F++L + I +AL GYE P+ IQ + IP LL+G+D+LG AQTG+GKTAAF++P+LQ Sbjct: 3 FSELNIIERIQKALTLSGYEAPTAIQEQAIPILLSGQDLLGSAQTGTGKTAAFAIPILQK 62 Query: 68 L--DPELKAP---QILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 + E KAP Q L+L PTRELA+Q+ E + ++K++ ++ +YGG Q AL Sbjct: 63 IYETKEHKAPRKVQALILTPTRELALQIHENVKIYAKYLNIIST-TIYGGVSQKRQEEAL 121 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 ++G +V+ TPGRLLD + + + L + LVLDEAD+ML MGFI+DV +I+ + P+ Q Sbjct: 122 KRGVDVVIATPGRLLDLMNQKIISLQDVRYLVLDEADQMLDMGFIKDVTSIVDKTPKKRQ 181 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 T LFSATMP+ I ++++ + P+ + + T I+QS + V K L+ + Sbjct: 182 TMLFSATMPKQIEVLSKQILVNPERIAVTPVTQTLDAITQSVYMVNKANKTLLLIDLIYT 241 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 + + ++F +TK+ ++ + L G S ++G +QA RE+ L K G+ IL+AT Sbjct: 242 LNMKSVLVFTKTKHGANKLVKNLMNLGIESEPIHGSKSQAARERALANFKKGKTKILVAT 301 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 D+AARG+D+E + V+N+++P E+Y+HRIGRTGRAG +G AL V+ E++LL +E+ Sbjct: 302 DIAARGIDIEALDYVINFELPEVPETYIHRIGRTGRAGLSGMALSLVDPSEQKLLTQVEK 361 Query: 363 TMKLTIPEV 371 + I V Sbjct: 362 HINSKIEAV 370 >UniRef50_A9M0D7 ATP-dependent RNA helicase, putative n=21 Tax=Neisseria RepID=A9M0D7_NEIM0 Length = 457 Score = 284 bits (727), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 157/375 (41%), Positives = 223/375 (59%), Gaps = 11/375 (2%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F+ LGL ++ AL GYE P+PIQA IP L G D+L AQTG+GKTAAF LP L+ Sbjct: 5 FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64 Query: 68 L--------DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119 L P + ++LVL PTRELA Q+ + + + K++ + V L+GG D Q Sbjct: 65 LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTV-LFGGMNMDKQT 123 Query: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179 LR G +IVV T GRLLDH+K+ + L+K+ +VLDEAD ML MGFI+D+ IM +P Sbjct: 124 ADLRAGCEIVVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPR 183 Query: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239 QT LFSAT IR++ + FM P+ V + + TT ++ Q V ++K L R Sbjct: 184 QRQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTIQKRNLLERL 243 Query: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299 + + I+F +TK + V L R ++ A++GD +Q R +TL KDG L +L Sbjct: 244 IVDLHMNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGNLRVL 303 Query: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359 +ATD+AARGLD+ + V+NY++P E YVHRIGRTGRAG G A+ ++ E+++ + Sbjct: 304 VATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFES 363 Query: 360 IERTM--KLTIPEVE 372 I+ KL I +E Sbjct: 364 IKELTGNKLLIERIE 378 >UniRef50_A6LBU1 ATP-dependent RNA helicase n=29 Tax=Bacteroidales RepID=A6LBU1_PARD8 Length = 426 Score = 284 bits (726), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 152/363 (41%), Positives = 221/363 (60%), Gaps = 12/363 (3%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F +L L+ +L+ L D+ +++ +P+Q IP +L G+D++ AQTG+GKTAA+ LP++ Sbjct: 3 FDELDLEDAVLDGLYDMNFDETTPVQELTIPVILEGKDIIACAQTGTGKTAAYVLPVINE 62 Query: 68 LDPELK---APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQ---RYDVQLRA 121 L A +++APTRELA Q+ + + F+ + V+ VA+YGG ++ Q R Sbjct: 63 LSKGCHPTDAVNAVIMAPTRELAQQIDQQIQGFTYFIPSVSAVAVYGGTDGIAWEQQKRG 122 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 L G IV+ TPGRLL H+K GT+DLSK+S VLDEAD ML MGF +D+ + Q+P Sbjct: 123 LEMGADIVIATPGRLLSHIKLGTVDLSKVSFFVLDEADRMLDMGFYDDIMQVHKQLPPYC 182 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRP--DISQSYWTVWGMRKNEALVRF 239 QT +FSATMP IR + + +K+P+EV+I S RP I Q+ + + +K + L Sbjct: 183 QTIMFSATMPPKIRTLAKTILKDPEEVKIAIS---RPPESIMQTAYICYDPQKLKILQDL 239 Query: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299 IIF +K E+A L+R +N AA++ D+ Q+ RE+ ++ K G +DIL Sbjct: 240 FTQSRPQRVIIFSSSKMKVKELASTLKRLKFNVAAMHSDLEQSQREEVMKEFKSGHIDIL 299 Query: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRA-GRALLFVENRERRLLR 358 +ATDV ARG+D+ I LVVN+DIP D E YVHRIGRT R G A+ FV E+ + Sbjct: 300 VATDVVARGIDINDIKLVVNFDIPHDPEDYVHRIGRTARGTNGEGLAITFVSIDEQAQFK 359 Query: 359 NIE 361 IE Sbjct: 360 RIE 362 >UniRef50_B8JG82 DEAD/DEAH box helicase domain protein n=8 Tax=Bacteria RepID=B8JG82_ANAD2 Length = 488 Score = 283 bits (725), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 169/386 (43%), Positives = 227/386 (58%), Gaps = 20/386 (5%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 TFADL L L+AL G+E P+PIQA+ IP L GRDV+G A TG+GKTAAF LP Sbjct: 13 LSPTFADLNLSEKTLQALERAGFEHPTPIQAQAIPPALGGRDVIGAAATGTGKTAAFLLP 72 Query: 64 LLQNLD---PELK----------APQILVLAPTRELAVQVAEAMTDFSK--HMRGVNVVA 108 +++ L P K P+ LVLAPTRELAVQ+A + F + H+RG V+ Sbjct: 73 IIERLGGGAPAPKDRPAAAHGKPGPRALVLAPTRELAVQIAGELDRFGRGRHVRGALVI- 131 Query: 109 LYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIE 168 GG Q ALR +++V TPGRL+DHL++GT L L LVLDEAD ML MGF Sbjct: 132 --GGVGMGAQSAALRDH-EVIVATPGRLVDHLQQGTARLDGLEVLVLDEADRMLDMGFAP 188 Query: 169 DVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVW 228 ++ I+A++P+ QT LFSATM + R +++P V + S T Q + Sbjct: 189 QLKRILARVPKVRQTLLFSATMAGEVAEFARAHLRDPVRVEVARSGTLAERAEQRVFLPE 248 Query: 229 GMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTL 288 K L+ LE +D + ++F RTK +VA+AL+R G+ A ++ D +QA R L Sbjct: 249 QREKLPLLMALLEEDDL-STLVFTRTKRRADKVAKALQRAGHKVARIHADRSQAQRRMAL 307 Query: 289 ERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLF 348 E +DG+ +L+ATD+AARG+DV I VVN+D+P E YVHR+GRT R +GRA F Sbjct: 308 EGFRDGQYRVLVATDIAARGIDVAEIGHVVNFDLPHVPEDYVHRVGRTARMAASGRASAF 367 Query: 349 VENRERRLLRNIERTMKLTIPEVELP 374 E LLR+IER + IP E+P Sbjct: 368 ASPEELDLLRDIERLTRAPIPRAEVP 393 >UniRef50_B5JNP6 DEAD/DEAH box helicase domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JNP6_9BACT Length = 436 Score = 283 bits (724), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 158/362 (43%), Positives = 230/362 (63%), Gaps = 8/362 (2%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +FA L L +L +L LGYE+ +PIQA IP +L G D+L AQTGSGKTAAFSLP+++ Sbjct: 2 SFASLSLSDFLLRSLETLGYEEATPIQAAAIPVVLKGSDLLAAAQTGSGKTAAFSLPIIE 61 Query: 67 NLD--PELKA-PQILVLAPTRELAVQVAEAMTDFSKHM-RGVNVVALYGGQRYDVQLRAL 122 L E KA P+ LVL PTRELAVQV A+ +++ R V+ +GG YD Q++A Sbjct: 62 RLAGMEEQKAKPRFLVLVPTRELAVQVGAAIERYAEGAPRKARVLVAFGGVGYDAQMKAA 121 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 G ++VV TPGRL+D +R ++ L ++ LVLDEAD +L +GF E++ TI+ +PEG Q Sbjct: 122 YAGVEVVVATPGRLIDLAERRSVVLDEVEMLVLDEADRLLALGFAEELNTILEMLPEGRQ 181 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRP--DISQSYWTVWGMRKNEALVRFL 240 LFSAT P+ + + +K+P V+I+ +RP I+Q V G + L L Sbjct: 182 NLLFSATFPQNVVSLANALLKDP--VKIELEAASRPVESIAQRAIEVDGNSRTGLLRHLL 239 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 E E ++ ++FV +K V L+++G + AL+G+M+Q R ++LER K ++ +L+ Sbjct: 240 ETEGWERVLVFVGSKRRAENVTVKLQKHGIKAVALHGNMSQDKRARSLERFKQSKVRVLM 299 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATDVAARG+D+ + VVNYD+P + YVHRIGRTGRAG +G A+ F+ + + R I Sbjct: 300 ATDVAARGIDIAGLPCVVNYDLPRSAADYVHRIGRTGRAGESGLAVNFITDDKDAHFRLI 359 Query: 361 ER 362 E+ Sbjct: 360 EK 361 >UniRef50_Q2BP56 Putative ATP-dependent RNA helicase n=1 Tax=Neptuniibacter caesariensis RepID=Q2BP56_9GAMM Length = 427 Score = 283 bits (723), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 156/389 (40%), Positives = 240/389 (61%), Gaps = 5/389 (1%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 ++FA+L L + L +LGYE+P+PIQ++ IP +L G D+L AQTG+GKTA+F+LP++ Sbjct: 4 SSFAELALCPELQFTLKNLGYEQPTPIQSQAIPLVLRGDDLLAEAQTGTGKTASFALPII 63 Query: 66 QNLDPE----LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 + L + + LVLAPTRELA+QVA+ ++ + + G+ V+++YGG + Q++ Sbjct: 64 EKLSKNPIDGYRPVRALVLAPTRELAIQVADNTLEYGRDL-GMRVISVYGGVPVENQIKR 122 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 L++G I+V TPGRLLD L++ + L KL LVLDEAD ML +GFI+ ++ IM + Sbjct: 123 LKRGTDILVATPGRLLDLLRQKAISLEKLEYLVLDEADRMLDLGFIDPIQKIMDYAADDR 182 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 QT LF+AT E++ + ++ P ++++ +T I Q + V +K + L + Sbjct: 183 QTLLFTATADESVEVLAEFYLNNPTKIKVTPRNSTAKQIRQFAYQVDYGQKADILSYLIT 242 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 + ++FVRTK E+ + L + G N+AA++G+ +Q R + L G L +L+A Sbjct: 243 EGKWGQTLVFVRTKKRVDELTQYLCKEGINAAAIHGEKSQRERVRMLNEFIAGDLHVLVA 302 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 TDVAARGLD+E + VVNYD+P E+YVHRIGRTGRAG G A+ V ER L+ IE Sbjct: 303 TDVAARGLDIESLPYVVNYDLPNQPEAYVHRIGRTGRAGETGEAVSLVAPAEREFLQRIE 362 Query: 362 RTMKLTIPEVELPNAELLGKRRLEKFAAK 390 + +K I +P E + ++ FA K Sbjct: 363 KLIKQKIKLRPVPRIEDGKRLEIDDFADK 391 >UniRef50_A9V2S5 Predicted protein n=2 Tax=Eukaryota RepID=A9V2S5_MONBE Length = 545 Score = 282 bits (722), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 158/375 (42%), Positives = 221/375 (58%), Gaps = 13/375 (3%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 TFAD G+ A ++ G++KP+ IQ+ C P ++ G+D++G+A TGSGKT AF+LP LQ Sbjct: 130 TFADAGVDADLMACTK--GFDKPTAIQSCCWPIVVQGQDLVGVAATGSGKTLAFTLPALQ 187 Query: 67 NLD----PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 ++ + P++LVL+PTRELA+Q+ + D K + ++ V +YGG QL AL Sbjct: 188 HVKGLGRSKTNCPRVLVLSPTRELALQINKVAQDAVKSLNQISAVCVYGGASKRDQLTAL 247 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 RQG ++V+ TPGRL+D L G LDLS +S LVLDEAD ML MGF D++ I+ + Q Sbjct: 248 RQGCELVIATPGRLVDFLNDGKLDLSHVSYLVLDEADRMLDMGFERDIKLILGAVGTQRQ 307 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQS-SVTTRPDISQSYWTVWGMRKNEALVRFLE 241 T +FSAT PE +R I +MK P V + S ++ ++ Q V M K+ L+ L Sbjct: 308 TLMFSATWPEEVRAIAANYMKNPLRVTVGSEELSANRNVKQVVDVVEPMEKDRRLLDVLR 367 Query: 242 ---AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDI 298 A +IF K + L+R YN ++GD+NQ RE L K G I Sbjct: 368 KHPASKNAKVLIFALYKKEAARLESFLQRKSYNVVGMHGDLNQGQREAALRAYKSGDSHI 427 Query: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERR--- 355 LIATDVAARGLDV+ +++V+NY P+ E YVHRIGRTGRAG G A F ++ Sbjct: 428 LIATDVAARGLDVKGVAVVINYTFPLTIEDYVHRIGRTGRAGATGIAYTFFTQHDKAHAG 487 Query: 356 LLRNIERTMKLTIPE 370 L N+ R + +PE Sbjct: 488 ALGNVLREADVEVPE 502 >UniRef50_B3QTY3 DEAD/DEAH box helicase domain protein n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QTY3_CHLT3 Length = 431 Score = 282 bits (722), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 151/365 (41%), Positives = 225/365 (61%), Gaps = 5/365 (1%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL-- 65 F + L IL AL +LGYE P+ IQA IP + G+D+L AQTG+GKTAAF+LP+L Sbjct: 6 FESISLNPSILRALKELGYETPTAIQAAAIPEAILGKDILATAQTGTGKTAAFALPILHR 65 Query: 66 --QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 +N +++AP+ L+L PTRELA+Q+ + +++++R + + GG Q++ LR Sbjct: 66 LGENRSYDIRAPRALILTPTRELALQIDNNIRLYARYLR-LRTGVIMGGVPAHPQIKMLR 124 Query: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183 + P I+V TPGRL+D +G + L ++ VLDEAD ML MGFI+D+ I + P HQT Sbjct: 125 RNPDILVATPGRLIDLFDQGFIGLDQIQTFVLDEADRMLDMGFIDDIRRIESLQPRDHQT 184 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAE 243 LFSAT+ I + R ++EP + + + +I+Q V K E L + Sbjct: 185 LLFSATLSPEIEALASRMLREPVRIEVAPVSSVADNITQKVLFVEQNNKRELLHNLFKEN 244 Query: 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 303 D A++F RTK VAE L R G ++ A++ +Q R++ L G++++L+ATD Sbjct: 245 DIKRALVFTRTKQRANHVAEQLIRLGISADAIHSSKSQRARQRALMLFDRGKINVLVATD 304 Query: 304 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 363 +AARG+DV+ IS V+NY++P D E+YVHRIGRT RAG +G AL F + E R+L+ IE+ Sbjct: 305 IAARGIDVDGISHVINYELPDDPENYVHRIGRTARAGASGTALSFCDADEVRMLKGIEKL 364 Query: 364 MKLTI 368 K +I Sbjct: 365 TKSSI 369 >UniRef50_C3RH47 ATP-dependent RNA helicase RhlE n=2 Tax=Bacteria RepID=C3RH47_9MOLU Length = 418 Score = 281 bits (720), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 142/357 (39%), Positives = 224/357 (62%), Gaps = 7/357 (1%) Query: 24 LGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNL---DPELKAP---QI 77 + Y+ PSPIQ + IP +++GRD+ G A+TG+GKTAAF+LP+LQ L D K P + Sbjct: 1 MKYDIPSPIQEQAIPAIISGRDIFGCAKTGTGKTAAFALPILQKLYLRDESEKYPRTIKA 60 Query: 78 LVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLL 137 L+LAPTRELA+Q+ E + + + ++GG R Q+ + +G +++ TPGRL+ Sbjct: 61 LILAPTRELAIQINETFEAMNPQV-NLKSAVIFGGVRQGSQVTKINRGIDVLIATPGRLI 119 Query: 138 DHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRI 197 D +G +DL + LVLDEAD ML MGFI+D+ I+ IP HQT LFSAT+P+ I+ + Sbjct: 120 DLYNQGLVDLKHVEYLVLDEADRMLDMGFIKDIRKILRFIPRRHQTMLFSATLPDEIKHL 179 Query: 198 TRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNA 257 + +P ++ I S T I+QS + V + K + L++ LE AI+FVRTK Sbjct: 180 VSDLLNDPLKIMISSGNVTVEKINQSLYFVDKVNKAKLLIKLLENPQIYNAIVFVRTKRN 239 Query: 258 TLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLV 317 + + L + ++GD +Q R + L K+ ++ +L+A+D+AARG+D++ ++ V Sbjct: 240 VDTLCKKLIKAQITCEGIHGDKSQNARVRALNNFKNDKVRVLVASDIAARGIDIDELTHV 299 Query: 318 VNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELP 374 +N+D+P +E+YVHRIGRT RAG +G A+ F +E+ LL++I++ + IP V+ P Sbjct: 300 INFDLPDQAENYVHRIGRTARAGASGEAITFCSFQEKALLKDIQKFINQDIPVVDNP 356 >UniRef50_A1B2U6 DEAD/DEAH box helicase domain protein n=23 Tax=Rhodobacterales RepID=A1B2U6_PARDP Length = 479 Score = 281 bits (720), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 158/378 (41%), Positives = 229/378 (60%), Gaps = 10/378 (2%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 + E +T F +G+ A + L LG E PSPIQ + IP ++ GRD+LG+AQTG+GKTAAF Sbjct: 62 IPEIDTAFTRMGIDARVAINLPGLGIETPSPIQEKSIPGIVAGRDLLGLAQTGTGKTAAF 121 Query: 61 SLPLLQNL-----DPELKAPQILVLAPTRELAVQVAEAMTDFS--KHMRGVNVVALYGGQ 113 LP+L L PE + + L+LAPTRELA Q+AE + +++ +R VV GG Sbjct: 122 GLPMLTRLLNIGRKPEPRTCRALILAPTRELATQIAENIDNYAIGTPIRQFRVV---GGA 178 Query: 114 RYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETI 173 +VQ++ L +G +++ TPGRL+D ++RG +DLS+ LVLDEAD+ML +GFI + I Sbjct: 179 SINVQVQRLERGVDVLIATPGRLIDLIERGAIDLSQTRYLVLDEADQMLDIGFIHALRRI 238 Query: 174 MAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKN 233 +P QT LFSATMP+ + + ++ +P V + I Q V K Sbjct: 239 AKMLPRERQTLLFSATMPKLMEELADSYLNDPLRVAVNPPGQAAEKIDQGVHFVNQGDKA 298 Query: 234 EALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKD 293 L +L + AI+F RTK+ + ++ + L++ G+ AA++G+ +Q RE+ L + Sbjct: 299 TLLAEYLSKHVDELAIVFGRTKHGSEKLCKLLDKWGFKVAAIHGNKSQGQRERALASFRA 358 Query: 294 GRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRE 353 G +L+ATDVAARGLD+ +++ V NYD+P E+YVHRIGRT RAGR GRA+ F E Sbjct: 359 GETKVLVATDVAARGLDIPQVAHVYNYDLPNVPENYVHRIGRTARAGRDGRAIAFCSPTE 418 Query: 354 RRLLRNIERTMKLTIPEV 371 LR IE+ MK I V Sbjct: 419 IGELRAIEKAMKAKIAVV 436 >UniRef50_Q1D015 ATP-dependent helicase, DEAD/DEAH-box family n=6 Tax=Cystobacterineae RepID=Q1D015_MYXXD Length = 808 Score = 281 bits (720), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 152/413 (36%), Positives = 238/413 (57%), Gaps = 2/413 (0%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F D+ L PI AL + GY P+P+QA + G+D++ ++TG+GKTAAF LPLL+ Sbjct: 31 FDDMNLSEPIRLALAERGYTNPTPVQARAFRPAIEGKDLIVRSKTGTGKTAAFGLPLLEK 90 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 + + + + L+L PTRELA+QVA+ + +KH +G+ + A+YGG Q AL +G Sbjct: 91 IPADERRVRALILCPTRELALQVADELKMLAKH-KGLKIAAIYGGASMKQQEDALEEGTP 149 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 I+VGTPGR+ DH+ RG L L VLDEADEML GF E+V I+ ++P+ Q LFS Sbjct: 150 IIVGTPGRVFDHINRGNLKLDACDHAVLDEADEMLNQGFYEEVTRILDRLPKTRQVLLFS 209 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVW-GMRKNEALVRFLEAEDFD 246 AT+P I+ + R+ + + + V T I + V K L+ LE E+ Sbjct: 210 ATVPTDIQNLIARYTTNAETLLLSGDVFTVEHIHHIRYDVSDAFPKPRNLIYVLEKEEPQ 269 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 AIIF T++ T V L RNG+++ LNGD+ Q RE+ + ++K G + ++ATD+AA Sbjct: 270 NAIIFCNTRDDTALVTAVLNRNGFDAELLNGDLPQKERERVMGKVKRGEVAFMVATDIAA 329 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RG+D+ + V+NY +P D Y+HR+GRTGR G G A+ RE ++E+ + Sbjct: 330 RGIDISGLEYVINYSLPEDPAVYLHRVGRTGRIGNKGTAINLFSGRELATYTSLEKKYGI 389 Query: 367 TIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEL 419 + E+P E + E+ ++Q+ S + + L ++++P A+ ++L Sbjct: 390 KFDKREMPAPEEAMRLWTERHVREIQEAAGGSVFEGFLPLAAQLKPRADADDL 442 >UniRef50_D1B113 DEAD/DEAH box helicase domain protein n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B113_SULD5 Length = 463 Score = 281 bits (719), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 150/359 (41%), Positives = 210/359 (58%), Gaps = 1/359 (0%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 T F L + +LE L LGY +PIQ +P +L GRD++ A+TGSGKT AF LPLL Sbjct: 6 TPFNHLIQNSAMLETLTRLGYHNMTPIQEASLPFILEGRDIVAKAKTGSGKTLAFGLPLL 65 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 L + Q +VL PTRELA QV+ + + + +V L GG R+ Q +L G Sbjct: 66 LALHVKQMRIQSVVLCPTRELAEQVSAELRKLASFTHNIKIVTLCGGARFVPQCISLEHG 125 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 IVVGTPGR+L HL+ T++ + LVLDEAD ML MGF ED+E I+A++P+ QT L Sbjct: 126 AHIVVGTPGRILQHLQEKTINFEHIKTLVLDEADRMLDMGFYEDIEKIIAKMPKERQTLL 185 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRP-DISQSYWTVWGMRKNEALVRFLEAED 244 FSAT P I ++ + KE ++ ++ + P ISQ V K L FL E Sbjct: 186 FSATFPREIEQMCQEVQKEALQISVEEEQKSAPLSISQIALKVEEREKEATLEAFLLNEM 245 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 + IIF +TK A + +L G+++ L+GD+ Q R++ L +G IL+ATD+ Sbjct: 246 PKSVIIFCKTKVAVSALQSSLYEAGFDALCLHGDLEQIARDENLLLFANGSAQILVATDL 305 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 363 AARGLD++ + +V+NY++P E Y HRIGRTGR G+ G+A+ FV E L +ER Sbjct: 306 AARGLDIKDVEMVINYELPHTIEIYTHRIGRTGRMGKEGKAISFVTPSEESFLHELERV 364 >UniRef50_B5ESS9 Dead/deah box heliCase domain/helicase conserved domain/dbpa rna binding domain protein n=9 Tax=Bacteria RepID=B5ESS9_VIBFM Length = 462 Score = 281 bits (719), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 155/376 (41%), Positives = 225/376 (59%), Gaps = 2/376 (0%) Query: 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 +T+F+ L L +L+ L LGY + +PIQA+ +P +L G+DV+ +TGSGKTAAF L L Sbjct: 3 QTSFSSLDLHPSLLQNLETLGYNEMTPIQAQSLPFMLKGKDVIAQGKTGSGKTAAFGLGL 62 Query: 65 LQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 L NL+ + Q LVL PTRELA QVA+ + ++ + + V+ L GG + Q+ +L Sbjct: 63 LANLNVKRFRVQSLVLCPTRELADQVAKEIRKLARAIHNIKVLTLCGGVPFGPQIGSLEH 122 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 G I+VGTPGR+ +HL++G L+L L+ VLDEAD ML MGF + ++ ++ P Q Sbjct: 123 GAHIIVGTPGRVEEHLRKGYLNLDNLNTFVLDEADRMLEMGFQDAIDAVLDHAPVKRQNL 182 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMR-KNEALVRFLEAE 243 LFSAT P I+ I R M +P + + +V I+Q ++ V + EAL L Sbjct: 183 LFSATFPPQIKSIADRIMNDPIMTKAEETVEN-TSINQHFFKVGDFEDRLEALQILLLKH 241 Query: 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 303 ++ +IF TK T EVA+ L ++ AL+GD+ Q R++ L R + IL+ATD Sbjct: 242 QPESTVIFCNTKRVTQEVADELRHYDFSVTALHGDLEQRDRDKALVRFANKSTSILVATD 301 Query: 304 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 363 VAARGLD+E + VVN+++ D E +VHRIGRTGRAG G AL +E + IE Sbjct: 302 VAARGLDIESLDAVVNFELSRDPEVHVHRIGRTGRAGNKGIALSLFNEKEMHNIAQIEEY 361 Query: 364 MKLTIPEVELPNAELL 379 M + I + LP+A+ L Sbjct: 362 MNIDIRDEALPSADYL 377 >UniRef50_A9KIC2 DEAD/DEAH box helicase domain protein n=5 Tax=Firmicutes RepID=A9KIC2_CLOPH Length = 483 Score = 281 bits (719), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 152/370 (41%), Positives = 224/370 (60%), Gaps = 1/370 (0%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F L I++AL+ L Y +P+PIQ + IP L G+D++ ++TGSGKTAAF++P+ ++ Sbjct: 6 FTQYKLCEEIIQALSMLHYIEPTPIQEKVIPLALEGKDIIAKSKTGSGKTAAFAIPICES 65 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 + E PQ LVL PTRELA QV + + + + M+ V V ++GG +D Q L+Q Sbjct: 66 IVWEENLPQALVLEPTRELAYQVKDEIFNVGR-MKRVKVPVVFGGFPFDKQALTLKQKSH 124 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 IVVGTPGR+LDH + GTL S + +++DEAD ML MGF++DV+ I++ +PE LFS Sbjct: 125 IVVGTPGRVLDHCETGTLKCSNVKYVIIDEADLMLDMGFLDDVKRILSYLPENITIMLFS 184 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 ATM EA+ +T FM P EV+++ T I Q V K E +R L + Sbjct: 185 ATMGEALYALTDEFMNSPVEVKLEDGTETVDSIEQLGCFVTEEDKYELFLRMLYKNNPTN 244 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 A+IF T+ + L++ L+G ++Q R T++ + G LIATDVAAR Sbjct: 245 AMIFCGTREMVEVLYYKLKKEKVWCGMLHGLIDQKQRIHTIDDFRTGGFRYLIATDVAAR 304 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 G+D + I+ V+NYD+PM E+YVHRIGRTGR G++G+A+ F+ E+++L IE+ Sbjct: 305 GVDFDDITHVINYDLPMSKETYVHRIGRTGRNGKSGKAISFIREEEKKMLSLIEKFTGTP 364 Query: 368 IPEVELPNAE 377 I V P+ E Sbjct: 365 IEIVTPPSEE 374 >UniRef50_B5IG60 DEAD/DEAH box helicase domain protein n=2 Tax=Aciduliprofundum boonei T469 RepID=B5IG60_9EURY Length = 451 Score = 281 bits (719), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 156/403 (38%), Positives = 240/403 (59%), Gaps = 16/403 (3%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F D+ + AL + + +P+ +Q + IP + GRD++ ++TGSGKT AF +P+ +N Sbjct: 6 FEDMSISKGTKNALKEHNFVEPTEVQEKAIPLAIKGRDLIVQSKTGSGKTLAFLIPIFEN 65 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 L+ L+A +VL PTRELA QV K G V +YGG + Q+ L+ G Sbjct: 66 LNSGLEA---IVLVPTRELAQQVERVARSIGK-AHGKRTVVIYGGAPMERQIAGLK-GAS 120 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 +V+GTPGR++D ++RG L+L+ + VLDEAD ML MGFI+D++ I+ + P+ Q LFS Sbjct: 121 MVIGTPGRVMDLMRRGYLNLNGIRFFVLDEADRMLDMGFIDDIKWILQKTPKDKQMMLFS 180 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 ATMP I + RR+MK P+++ + T +++Q Y V + K L L +E Sbjct: 181 ATMPPEIISLARRYMKNPEKIILSEDEITAENVAQYYVEVGEINKIAKLSSLLISER-GK 239 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 +IF T+ T +AE L++ G+ + AL+GDM QA R +T++ K G++DIL++TDVAAR Sbjct: 240 YLIFCNTRRKTKNIAEILQKYGFKAFALHGDMRQATRTRTMDAFKQGKIDILVSTDVAAR 299 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 G+DV I+ VVNYD+P+ + YVHRIGRTGR G+A+ FV ++ R IE + Sbjct: 300 GIDVHGITHVVNYDVPLYPKDYVHRIGRTGRMDAHGKAITFVTREDKEYFRRIEDFIGKR 359 Query: 368 IPEVELPNAELLGKRR----------LEKFAAKVQQQLESSDL 400 IP++E+ N + +R + KF +++ +L DL Sbjct: 360 IPKMEIKNVGKIKERIDYKEISDIFGMVKFNFELKNELSEWDL 402 >UniRef50_B6IS62 DEAD/DEAH box helicase protein n=1 Tax=Rhodospirillum centenum SW RepID=B6IS62_RHOCS Length = 528 Score = 280 bits (717), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 152/362 (41%), Positives = 220/362 (60%), Gaps = 7/362 (1%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 +F+DLGL +L+A+ +LG+ P+PIQ + +P L GRDV+ A TG+GKTAAF LP L Sbjct: 8 VSFSDLGLLPHLLKAVEELGFTTPTPIQQQALPAALTGRDVVASANTGTGKTAAFVLPSL 67 Query: 66 QNLDPELKA-----PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 Q + +A P++LVL PTRELA QV E++ + SK R + + GG Y QL Sbjct: 68 QRIATTARAEAAWGPRVLVLTPTRELASQVLESVRNLSKFGR-IQTGTILGGMPYRQQLE 126 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 LR+ ++V TPGRL+DH++RG LDLS + LVLDEAD ML MGF E VE I A P Sbjct: 127 MLRRRVDLIVATPGRLMDHMERGRLDLSGVEVLVLDEADRMLDMGFREAVEFIAAACPAE 186 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM-RKNEALVRF 239 QT LF+AT+ R+ + ++P + + + Q + G+ K+ L Sbjct: 187 RQTLLFTATLDRTAERLAQTLTRDPVRIDVAGKAVVTAQVEQRWLRADGLEHKHRLLETL 246 Query: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299 L E+F I+F+ TK +A+ L G+ + L+GDM Q R + ++ L+DGR++++ Sbjct: 247 LGGEEFGKGIVFIATKLDADRLADTLSEKGHKAMPLHGDMQQRDRNRVVQWLRDGRINVI 306 Query: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359 +ATDVAARG+D+ ++ V+N+D+P +E YVHRIGRTGRAG +G + E R +R Sbjct: 307 VATDVAARGIDIADLTHVINFDLPKQAEDYVHRIGRTGRAGASGVSYSLFTRMEWRQVRA 366 Query: 360 IE 361 IE Sbjct: 367 IE 368 >UniRef50_A5FST0 DEAD/DEAH box helicase domain protein n=5 Tax=Dehalococcoides RepID=A5FST0_DEHSB Length = 561 Score = 280 bits (716), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 143/366 (39%), Positives = 224/366 (61%), Gaps = 9/366 (2%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +F ++ + GY++P+PIQA+ IP ++ G DV+G+AQTG+GKTAA++LP++Q Sbjct: 2 SFESFNFDPAVMAGVRACGYKEPTPIQAQAIPPIMAGHDVIGLAQTGTGKTAAYALPIIQ 61 Query: 67 NLDPELKAPQ----ILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 + L P+ LV+APTRELA Q++++ + R + ++YGG D Q+R L Sbjct: 62 KM---LSTPRGRVRTLVIAPTRELACQISDSFRSLGQRAR-IRECSIYGGVNMDQQIRRL 117 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 R G +VV PGRLLDH+ RGT+D+ + L++DEAD M MGF D+++I+ + + HQ Sbjct: 118 RSGVDVVVACPGRLLDHIWRGTIDVCGVETLIIDEADRMFDMGFQPDIQSILKCLVQPHQ 177 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 T LFSATMP +R++T P V++ + +S S + V +K L+ L+ Sbjct: 178 TLLFSATMPPEVRKLTLETQTNPVTVQVGTQSPVS-SVSHSVYPVKSHQKTPLLLEILKT 236 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 + + +IF RTK +A+ + + G+ +A+L G+++Q R +E + G IL+AT Sbjct: 237 VETKSVLIFARTKYGAENLADEISKAGFTTASLQGNLSQNRRHAVMEGFRRGNFKILVAT 296 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 D+AARGLD++ IS V+NYD+P E Y HRIGRTGR R G+A V R+ ++R+I+R Sbjct: 297 DIAARGLDIDHISHVINYDMPDSPEDYTHRIGRTGRFDRTGQAFSLVTGRDGDMVRDIQR 356 Query: 363 TMKLTI 368 + I Sbjct: 357 LLSSPI 362 >UniRef50_C1AE59 ATP-dependent RNA helicase RhlE n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AE59_GEMAT Length = 498 Score = 280 bits (715), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 157/392 (40%), Positives = 226/392 (57%), Gaps = 12/392 (3%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 TF+ L L + + L +LG+ +P+PIQ E IP L GRDVL A TGSGKT AF LP+L Sbjct: 4 TFSSLQLHPSLQQGLKELGFARPTPIQGEAIPPALEGRDVLACAMTGSGKTYAFLLPILH 63 Query: 67 NLDPELKA-PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 L + + + LVL PTRELA Q+ E++ D + H + A++GG Q A R G Sbjct: 64 QLMSKPRGNTRALVLTPTRELAAQILESLQDVTTHT-PLTGAAVFGGVGMGPQEHAFRSG 122 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE-GHQTA 184 ++V TPGRLLDH ++ L +L LVLDEAD ML MGF+ +++ I+ +P QT Sbjct: 123 VDVIVATPGRLLDHFRQPYAKLDQLEYLVLDEADRMLDMGFLPEIKKILRHLPNRKRQTL 182 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 FSATMP I +T+ + +P + +Q I+Q+ + V K+ LV L+ D Sbjct: 183 FFSATMPPPIAALTQEMLNKPVTLNLQRQAAPAKGITQAVYPVSQELKSALLVALLKRGD 242 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 A++F RTK+ +A L G + ++G+ +Q+ R Q L KDG +L+ATD+ Sbjct: 243 MPQALVFTRTKHRANRLASQLVTAGIKAERIHGNRSQSQRTQALAGFKDGSYQVLVATDI 302 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 AARG+DVE + VVN+D+P+ +E Y+HR+GRT RA G A FV E L+ IER + Sbjct: 303 AARGIDVEALGHVVNFDVPVAAEDYIHRVGRTARAEATGEAFTFVSPEEEGELKLIERAI 362 Query: 365 KLTIPEVELPNAELLGKRRLEKFAAKVQQQLE 396 K +P V +P+ + + AK Q+LE Sbjct: 363 KRALPRVTVPDFD---------YHAKPTQKLE 385 >UniRef50_UPI0000E87E35 putative ATP-dependent RNA helicase protein n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87E35 Length = 427 Score = 279 bits (714), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 145/375 (38%), Positives = 224/375 (59%), Gaps = 5/375 (1%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +F L A IL+A+ + GY++P+PIQ + IP ++ + VL AQTG+GKTAAF LP+L Sbjct: 2 SFQTFNLDASILKAIQEAGYDQPTPIQTKSIPEIMLNKHVLASAQTGTGKTAAFVLPILD 61 Query: 67 NLD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 L E + P++L+++PTRELA Q+ +++ +S+++R +N + + GG Y +Q R Sbjct: 62 KLTKNRSEGRGPRVLIVSPTRELATQITDSIKKYSRYLR-INSITITGGISYGLQNRMFS 120 Query: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183 + I+V TPGRLLD ++ ++ L ++LDEAD ML MGF+ D+ I + Q Sbjct: 121 KPIDILVATPGRLLDLYQQKKINFKGLEVMILDEADRMLDMGFVPDIRKIYNATSKKQQM 180 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQ-SYWTVWGMRKNEALVRFLEA 242 +FSAT I++I + F+ P + I+ V+ +I Q Y+ K + L F++ Sbjct: 181 LMFSATFDPPIQKIAQEFLTNPVTISIKPDVSGHKNIKQLIYFADNQSHKQQMLDHFIKN 240 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 ++ AIIF TK ++++ L + ++AL+GDM+Q R +T+ R K IL+AT Sbjct: 241 DEVTQAIIFTATKRMADQLSDQLYHSDIKTSALHGDMSQGSRTKTINRFKRNETKILVAT 300 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 D+A+RG+DV+ IS V NYD+P +E Y+HRIGRTGRA G A+ V +R LR IER Sbjct: 301 DLASRGIDVKNISHVFNYDMPRFAEDYIHRIGRTGRANNKGIAISLVSPTDREFLRKIER 360 Query: 363 TMKLTIPEVELPNAE 377 L I +P E Sbjct: 361 FTNLKIEIASIPGME 375 >UniRef50_Q485D3 ATP-dependent RNA helicase, DEAD box family n=24 Tax=Gammaproteobacteria RepID=Q485D3_COLP3 Length = 455 Score = 279 bits (714), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 158/428 (36%), Positives = 245/428 (57%), Gaps = 29/428 (6%) Query: 11 LGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNL-- 68 +GL A +L+A+ GY+ +PIQ E IP + G D+L AQTG+GKTAAFSLP+L + Sbjct: 6 IGLSADLLKAVKACGYKNLTPIQQEAIPVIRQGVDLLASAQTGTGKTAAFSLPILDAIAK 65 Query: 69 --------------------DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVA 108 +A + L+L PTRELA QVA+ + FS+++ + Sbjct: 66 ANHAAKSSTTSTDENSAEEKSASGQAIRALILTPTRELANQVADNIKQFSQYL-PIKSGV 124 Query: 109 LYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIE 168 +YGG + Q + L+QG ++V TPGRLL+HL +DLS++ LVLDEAD ML MGF+ Sbjct: 125 VYGGGKMASQTKMLKQGLDVLVATPGRLLEHLALRNVDLSQVKFLVLDEADRMLDMGFLT 184 Query: 169 DVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVW 228 D+E ++ + HQT +FSAT + ++ + + +K P+ + + TT I Q+ + V Sbjct: 185 DIEKLLLAVKHKHQTLMFSATFSDRVKSLANQLLKSPKTISVSKENTTSGKIKQAVYWVT 244 Query: 229 GMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTL 288 RK E L + ++ ++F TK + +A+ L+ +G +A +GD Q R + L Sbjct: 245 EERKRELLSELIGVNNWQQVLVFAGTKESANTLAKELKLDGIKAALCHGDKTQGARNKAL 304 Query: 289 ERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLF 348 E+ +G++ +L+ATDVAARGLD+ ++ VVN+ +P E YVHR+GRTGRAG++G A+ Sbjct: 305 EQFSEGKVRVLVATDVAARGLDIPDLAFVVNFHLPFLPEDYVHRVGRTGRAGKSGTAISL 364 Query: 349 VENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDL-DQYRALL 407 V ++ R L NIE+ ++ + P E RLE A++ Q+ D ++YRA Sbjct: 365 VSPKDERFLENIEQLIERKFERIVAPGYEF---NRLE--ASEYQEATVKRDSKNRYRAAQ 419 Query: 408 SKIQPTAE 415 K Q A+ Sbjct: 420 EKNQNLAK 427 >UniRef50_Q2BMZ1 ATP-dependent RNA helicase n=1 Tax=Neptuniibacter caesariensis RepID=Q2BMZ1_9GAMM Length = 417 Score = 279 bits (714), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 152/377 (40%), Positives = 225/377 (59%), Gaps = 7/377 (1%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +F LGL L+ LGY++P+ IQ + IP +L G D++ A+TGSGKTA F LPLL+ Sbjct: 2 SFVSLGLSDFFTSTLSSLGYKEPTAIQDKAIPAVLKGHDLIAAAETGSGKTAGFVLPLLE 61 Query: 67 NLDPELKAP-----QILVLAPTRELAVQVAEAMTDFSKHM-RGVNVVALYGGQRYDVQLR 120 L + AP LVL PTRELAVQV++++ +S++ R + VA+YGG + Q++ Sbjct: 62 KLH-SIPAPGNNLTHALVLVPTRELAVQVSQSVDRYSENCPRKIRSVAIYGGAAINPQMQ 120 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 +L +G IVV TPGRLLD +++ LDL L LVLDEAD ML +GF ++++ I+ Q P Sbjct: 121 SLSKGCDIVVATPGRLLDLMRKNALDLRGLKALVLDEADRMLDLGFADELDDILDQTPGN 180 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 QT LFSAT P+ ++ +T ++ P E+ ++ T + Q V + L + Sbjct: 181 VQTLLFSATFPDKVKELTEELLRNPVEISVKQEATLPDQLHQRAIEVDRNNRTMLLKHLI 240 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 + E + +IFV +K + L R+G S+ L+GD+ Q R LE GR ILI Sbjct: 241 KQEKWQQLLIFVGSKRTANNIELKLYRSGIQSSTLHGDLTQKERLGALEDFSKGRCKILI 300 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATD+AARG+D+ + V+NYD+P + YVHR GRT RAG AG A+ FV++ + I Sbjct: 301 ATDLAARGIDIPSLPCVLNYDLPRATSDYVHRAGRTARAGEAGLAISFVDHESDAHFKLI 360 Query: 361 ERTMKLTIPEVELPNAE 377 E+ +++ IP ++P E Sbjct: 361 EKRIRMKIPREQIPGFE 377 >UniRef50_P21693 ATP-independent RNA helicase dbpA n=380 Tax=cellular organisms RepID=DBPA_ECOLI Length = 457 Score = 279 bits (713), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 152/349 (43%), Positives = 212/349 (60%), Gaps = 2/349 (0%) Query: 6 TTFADLGLKAPI-LEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 T F+ L + P L LN+LGY +P+QA +P +L G+DV A+TGSGKTAAF L L Sbjct: 2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61 Query: 65 LQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 LQ +D L Q LVL PTRELA QVA + ++ + ++ L GGQ + +Q +L+ Sbjct: 62 LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 P I+V TPGRLLDHL++GT+ L L+ LV+DEAD ML MGF + ++ ++ P QT Sbjct: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 LFSAT PEAI I+ R ++P + I S+ P I Q ++ K L R L Sbjct: 182 LFSATWPEAIAAISGRVQRDPLAIEIDST-DALPPIEQQFYETSSKGKIPLLQRLLSLHQ 240 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 + ++F TK V +AL G ++ +L+GD+ Q R+QTL R +G +L+ATDV Sbjct: 241 PSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV 300 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRE 353 AARGLD++ + LVVN+++ D E +VHRIGRT RAG +G A+ F E Sbjct: 301 AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349 >UniRef50_D1B8Z1 DEAD/DEAH box helicase domain protein n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B8Z1_THEAS Length = 558 Score = 279 bits (713), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 188/531 (35%), Positives = 289/531 (54%), Gaps = 29/531 (5%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECI--PHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 F L+ +L AL G+E P P+Q + P L++G D++ A+TGSGKT AF+LPLL Sbjct: 7 FDQYPLRDELLSALRRKGFEHPMPVQVSMLEDPTLVDG-DLIVQAKTGSGKTLAFALPLL 65 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 ++ ++P++LVL+PTRELA+Q A +R + V +L GG + Q++ALR+G Sbjct: 66 NRMEFGERSPKVLVLSPTRELALQTAREFQWLGYDLR-IRVASLVGGMDMERQVKALREG 124 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 +VVGTPGR+LDH++RGT + LVLDE D ML +GF +++E IMA + + ++ L Sbjct: 125 AAVVVGTPGRVLDHIRRGTFRADLVESLVLDEGDHMLDLGFKDELEDIMAAMTQVERSWL 184 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSATMPE + + ++++ P+++ + DI Q + + R+ E L L E Sbjct: 185 FSATMPEEVVTLAKQYLDAPRKISLVEDAAKHDDIVQRAYIIPARRRFEGLANVLLFERP 244 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 I+F TK T E+AE L G+ ++AL+GDM Q R LE L+ GR IL+ATDVA Sbjct: 245 RRGIVFCATKLQTQELAERLCDEGFKASALHGDMTQRERNMALENLRRGRSQILVATDVA 304 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARGLD+ +S V+ + +P E+++HR GRTGRAG+ GR L+ + RE R + R Sbjct: 305 ARGLDISGVSHVIQFGLPGCLETFIHRSGRTGRAGQEGRNLILLTAREAGEFRGMIRGTS 364 Query: 366 LTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLA 425 L + + P+AE L + L ++++++ ++ AEGE D A Sbjct: 365 LEVEWLPAPDAEEL-------------ESLTRAEIERW-----CLENPAEGE--DYMDWA 404 Query: 426 AALLKMAQGERTL--IVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGD-REDRPRRERRD 482 +L+ + + ++ PK D + R+ R R R+ RP R+ Sbjct: 405 EEILQREDAQLIVAGLLSRSFEGIPKGYSIQEDVQAEMARSRRADRPKARDQRPL--RKL 462 Query: 483 VGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIEL 533 V R GR+DG EV ++GA+ I +GNIKL + +EL Sbjct: 463 VSGSVTMRFSSGREDGWEVGPLLGALCRGLGIRREDVGNIKLKDRCAFVEL 513 >UniRef50_B7C8E9 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8E9_9FIRM Length = 475 Score = 279 bits (713), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 144/380 (37%), Positives = 237/380 (62%), Gaps = 12/380 (3%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 TF + L I++AL+ LGYEKP P+Q + IP++L+ D + ++TGSGKTA+F++P++Q Sbjct: 2 TFEQMNLDQNIIQALHTLGYEKPLPVQEQVIPNILSQTDCIVKSRTGSGKTASFAIPIIQ 61 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSK--HMRGVNVVALYGGQRYDVQLRALRQ 124 NL+ + ++PQ LVL PTRELA+Q+ + DF + + + + ++G Q + Q L+Q Sbjct: 62 NLEIDERSPQALVLTPTRELALQIQQ---DFDRIGTFKKIKTLPIFGKQPFKFQKEDLKQ 118 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 +V+GTPGR+LDHL++ TLD SK+ +VLDEADEML M F+++V+ I+ +P+ H T Sbjct: 119 RCHVVIGTPGRVLDHLQQQTLDPSKIKYVVLDEADEMLNMNFLDEVQAILKYMPKKHVTC 178 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 LFSAT P I+R++++++ +P +V + S T +P+I + + V K L+ L + Sbjct: 179 LFSATYPAVIQRMSKKYLYKPAKVDLTS--TNKPNILEEAYHVNEEHKELFLLHLLALKK 236 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 ++ +IF +T+ V LE+N + ++G M Q R + R K G++ IL+ TDV Sbjct: 237 PESCMIFCKTQARVDAVYACLEKNQVSVDKIHGGMMQEERLSHMRRFKKGKVRILVCTDV 296 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 A+RG+DV ++ +++NYD+P E+Y HRIGR+GR G A+ V + +E + Sbjct: 297 ASRGIDVFKVEMIINYDMPSPVETYTHRIGRSGRVDEQGLAISLVNEYDGVRKEKLEEYL 356 Query: 365 KLTIP-----EVELPNAELL 379 +P EV L + ++L Sbjct: 357 GYNLPFKDEGEVYLSDLDVL 376 >UniRef50_B2S5R2 ATP-dependent RNA helicase, DEAD/DEAH box family n=54 Tax=cellular organisms RepID=B2S5R2_BRUA1 Length = 531 Score = 279 bits (713), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 160/369 (43%), Positives = 223/369 (60%), Gaps = 9/369 (2%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 FA LG+ +L+ + G +P PIQ + IP L G+D+LG+AQTGSGKTAAFSLP+LQ Sbjct: 89 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 148 Query: 68 L-----DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 + K + L+LAPTRELAVQ+ + + + SK ++ + GG Q++ + Sbjct: 149 IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAH-ISTALVLGGVSKLSQIKRI 207 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 G +++ TPGRL D ++ G +DLS+ LVLDEAD ML MGFI DV+ I Q Sbjct: 208 APGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQ 267 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 TALFSATMP+ I + R +++P V + TT +I+Q V K L L Sbjct: 268 TALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTD 327 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 D + I+F RTK+ V LER+ Y+ AA++G+ +Q R++ L +DG L IL+AT Sbjct: 328 ADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVAT 387 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRAL-LFVENRERRLLRNIE 361 D+AARG+DV IS VVNYD+P + E+YVHRIGRTGR G +G ++ L+ E LR +E Sbjct: 388 DIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVE 447 Query: 362 RTM--KLTI 368 R KL+I Sbjct: 448 RVTRSKLSI 456 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0A9P7 Cold-shock DEAD box protein A n=201 Tax=Bacteria... 933 0.0 UniRef50_A2SQE1 DEAD/DEAH box helicase domain protein n=17 Tax=c... 758 0.0 UniRef50_P44586 Cold-shock DEAD box protein A homolog n=29 Tax=P... 757 0.0 UniRef50_B4SPP3 DEAD/DEAH box helicase domain protein n=16 Tax=c... 752 0.0 UniRef50_Q1MY97 DEAD/DEAH box helicase-like protein n=1 Tax=Berm... 751 0.0 UniRef50_A6T3R2 ATP-dependent RNA helicase n=86 Tax=Bacteria Rep... 748 0.0 UniRef50_Q3IJ60 ATP-dependent RNA helicase, cold shock protein A... 746 0.0 UniRef50_C5S7U5 DEAD/DEAH box helicase domain protein n=1 Tax=Al... 741 0.0 UniRef50_Q5NZY2 ATP-dependent RNA helicase DeaD n=12 Tax=Bacteri... 741 0.0 UniRef50_Q7UG20 ATP-dependent RNA helicase n=2 Tax=Bacteria RepI... 740 0.0 UniRef50_C4LJP9 ATP-dependent RNA helicase n=15 Tax=Bacteria Rep... 729 0.0 UniRef50_D2NRF7 Superfamily II DNA and RNA helicase n=3 Tax=Bact... 728 0.0 UniRef50_C8WWM6 DEAD/DEAH box helicase domain protein n=1 Tax=Al... 721 0.0 UniRef50_B1VFV5 ATP-dependent RNA helicase n=35 Tax=cellular org... 721 0.0 UniRef50_C9RIQ5 DEAD/DEAH box helicase domain protein n=1 Tax=Fi... 719 0.0 UniRef50_C6VX00 DEAD/DEAH box helicase domain protein n=1 Tax=Dy... 717 0.0 UniRef50_C5EJJ1 DEAD/DEAH box helicase domain-containing protein... 712 0.0 UniRef50_B0TII3 Dead/deah box helicase n=18 Tax=Bacteria RepID=B... 710 0.0 UniRef50_A4BET4 DEAD/DEAH box helicase-like protein n=1 Tax=Rein... 710 0.0 UniRef50_C7HXF4 DEAD/DEAH box helicase domain protein n=3 Tax=Ba... 708 0.0 UniRef50_D2RJY3 DEAD/DEAH box helicase domain protein n=2 Tax=Fi... 707 0.0 UniRef50_A4C3X3 RNA helicase DeaD n=3 Tax=Alteromonadales RepID=... 706 0.0 UniRef50_D2QD85 DEAD/DEAH box helicase domain protein n=1 Tax=Sp... 699 0.0 UniRef50_C0Q9A4 DeaD n=1 Tax=Desulfobacterium autotrophicum HRM2... 699 0.0 UniRef50_Q5ZT20 ATP-dependent RNA helicase n=4 Tax=Legionella pn... 699 0.0 UniRef50_B8J1L5 DEAD/DEAH box helicase domain protein n=3 Tax=Ba... 696 0.0 UniRef50_D2LSA7 DEAD/DEAH box helicase domain protein n=1 Tax=Ba... 690 0.0 UniRef50_Q11039 Cold-shock DEAD box protein A homolog n=27 Tax=B... 690 0.0 UniRef50_Q3AX69 DEAD/DEAH box helicase-like n=18 Tax=cellular or... 689 0.0 UniRef50_A8SKI7 Putative uncharacterized protein n=1 Tax=Parvimo... 689 0.0 UniRef50_C5RIK3 DEAD/DEAH box helicase domain protein n=3 Tax=Cl... 689 0.0 UniRef50_Q11UP8 ATP-dependent RNA helicase (Cold-shock DEAD-box ... 687 0.0 UniRef50_C5CGQ2 DEAD/DEAH box helicase domain protein n=1 Tax=Ko... 685 0.0 UniRef50_B0U160 DEAD-box subfamily ATP-dependent helicase n=18 T... 684 0.0 UniRef50_A6KZW9 ATP-dependent RNA helicase n=51 Tax=Bacteria Rep... 683 0.0 UniRef50_Q484Q1 RNA helicase DeaD n=1 Tax=Colwellia psychrerythr... 682 0.0 UniRef50_Q8D2Y1 DeaD protein n=2 Tax=Enterobacteriaceae RepID=Q8... 681 0.0 UniRef50_A0Z0M4 ATP-dependent RNA helicase n=1 Tax=marine gamma ... 680 0.0 UniRef50_C0W1P0 Superfamily II helicase n=2 Tax=Actinomyces RepI... 680 0.0 UniRef50_A6M3F5 DEAD/DEAH box helicase domain protein n=5 Tax=Cl... 675 0.0 UniRef50_Q2NEZ7 Predicted helicase n=20 Tax=cellular organisms R... 674 0.0 UniRef50_Q6AMK6 Probable ATP-dependent RNA helicase n=1 Tax=Desu... 674 0.0 UniRef50_C7MCD0 DNA/RNA helicase, superfamily II n=2 Tax=Actinom... 672 0.0 UniRef50_A9ENG9 ATP-independent RNA helicase n=18 Tax=Bacteria R... 671 0.0 UniRef50_A8REA9 Putative uncharacterized protein n=1 Tax=Eubacte... 670 0.0 UniRef50_C0EAN9 Putative uncharacterized protein n=1 Tax=Clostri... 668 0.0 UniRef50_Q725W5 ATP-dependent RNA helicase, DEAD/DEAH family n=3... 667 0.0 UniRef50_C1IBN1 DEAD-box ATP dependent DNA helicase n=1 Tax=Clos... 666 0.0 UniRef50_Q0ST49 ATP-dependent RNA helicase, DEAD/DEAH box family... 665 0.0 UniRef50_B9Y818 Putative uncharacterized protein n=1 Tax=Holdema... 665 0.0 UniRef50_A6VJ89 DEAD/DEAH box helicase domain protein n=5 Tax=Eu... 664 0.0 UniRef50_Q1QYG3 DEAD/DEAH box helicase-like protein n=1 Tax=Chro... 663 0.0 UniRef50_B9ZPI5 DEAD/DEAH box helicase domain protein n=2 Tax=Ba... 663 0.0 UniRef50_B7VSB7 ATP-dependent RNA helicase n=74 Tax=Gammaproteob... 663 0.0 UniRef50_A5CVQ6 ATP-dependent RNA helicase DeaD n=2 Tax=sulfur-o... 662 0.0 UniRef50_C8P265 DEAD/DEAH family ATP-dependent RNA helicase n=1 ... 660 0.0 UniRef50_Q31AC4 DEAD/DEAH box helicase-like protein n=9 Tax=Proc... 660 0.0 UniRef50_D1BSR4 DEAD/DEAH box helicase domain protein n=5 Tax=Ac... 658 0.0 UniRef50_Q46G62 ATP-dependent RNA helicase n=7 Tax=cellular orga... 656 0.0 UniRef50_D0WN23 ATP-dependent RNA helicase DeaD n=1 Tax=Actinomy... 655 0.0 UniRef50_B0P7Y4 Putative uncharacterized protein n=1 Tax=Anaerot... 652 0.0 UniRef50_C5C5R9 DEAD/DEAH box helicase domain protein n=1 Tax=Be... 652 0.0 UniRef50_B1ZXI6 DEAD/DEAH box helicase domain protein n=3 Tax=Ve... 648 0.0 UniRef50_Q0AVQ9 ATP-dependent RNA helicase n=1 Tax=Syntrophomona... 647 0.0 UniRef50_UPI00016C471F RNA helicase DeaD n=1 Tax=Gemmata obscuri... 646 0.0 UniRef50_A4C1L2 ATP-dependent RNA helicase n=2 Tax=Polaribacter ... 645 0.0 UniRef50_A9NFC3 DEAD box ATP-dependent RNA helicase n=1 Tax=Acho... 644 0.0 UniRef50_Q48FQ8 ATP-dependent RNA helicase, DEAD box family n=23... 644 0.0 UniRef50_A5FH88 DEAD/DEAH box helicase domain protein n=21 Tax=B... 637 0.0 UniRef50_B8FMI0 DEAD/DEAH box helicase domain protein n=1 Tax=De... 633 e-180 UniRef50_B2UNH8 DEAD/DEAH box helicase domain protein n=1 Tax=Ak... 633 e-180 UniRef50_Q5L3G9 DEAD-box ATP-dependent RNA helicase cshA n=94 Ta... 632 e-179 UniRef50_Q65N62 DEAD-box ATP-dependent RNA helicase cshA n=135 T... 630 e-179 UniRef50_C6X450 Cold-shock DEAD-box protein A n=1 Tax=Flavobacte... 630 e-179 UniRef50_Q81IT9 DEAD-box ATP-dependent RNA helicase cshA n=84 Ta... 627 e-178 UniRef50_C0YHR5 ATP-dependent RNA helicase n=1 Tax=Chryseobacter... 626 e-178 UniRef50_A7HKQ8 DEAD/DEAH box helicase domain protein n=1 Tax=Fe... 623 e-177 UniRef50_B1V958 DEAD/DEAH box helicase-like n=4 Tax=Candidatus P... 622 e-176 UniRef50_C0AEG7 DEAD/DEAH box helicase domain protein (Fragment)... 622 e-176 UniRef50_Q04VV9 ATP-dependent RNA helicase (Superfamily II) n=4 ... 621 e-176 UniRef50_Q2FKY7 DEAD/DEAH box helicase-like n=1 Tax=Methanospiri... 621 e-176 UniRef50_A6DIU5 Probable ATP dependent RNA helicase n=1 Tax=Lent... 621 e-176 UniRef50_C7RHZ9 DEAD/DEAH box helicase domain protein n=3 Tax=An... 618 e-175 UniRef50_Q2LY23 Superfamily II DNA and RNA helicases n=2 Tax=Bac... 615 e-174 UniRef50_A9BJS7 DEAD/DEAH box helicase domain protein n=2 Tax=ce... 613 e-174 UniRef50_Q26CN9 ATP-dependent RNA helicase n=2 Tax=cellular orga... 612 e-173 UniRef50_D1N203 DEAD/DEAH box helicase domain protein n=1 Tax=Vi... 612 e-173 UniRef50_C6BZ63 DEAD/DEAH box helicase domain protein n=1 Tax=De... 610 e-173 UniRef50_D0JAM0 ATP-dependent RNA helicase n=2 Tax=Blattabacteri... 607 e-172 UniRef50_C2ME86 ATP-dependent RNA helicase, dead/deah box family... 602 e-170 UniRef50_C8PQM8 DEAD/DEAH box helicase n=1 Tax=Treponema vincent... 601 e-170 UniRef50_C7NBE3 DEAD/DEAH box helicase domain protein n=3 Tax=Le... 598 e-169 UniRef50_D1B4W7 DEAD/DEAH box helicase domain protein n=2 Tax=Ba... 596 e-169 UniRef50_D2LXV0 DEAD/DEAH box helicase domain protein n=1 Tax=Ba... 592 e-167 UniRef50_Q7NHM7 Gll2508 protein n=1 Tax=Gloeobacter violaceus Re... 592 e-167 UniRef50_D1U888 DEAD/DEAH box helicase domain protein n=1 Tax=De... 592 e-167 UniRef50_Q0W8H7 ATP-dependent RNA helicase n=1 Tax=uncultured me... 590 e-167 UniRef50_Q8YXJ0 ATP-dependent RNA helicase n=24 Tax=Cyanobacteri... 584 e-165 UniRef50_UPI0001C33831 DNA/RNA helicase, superfamily II n=3 Tax=... 583 e-165 UniRef50_B2V9H9 DEAD/DEAH box helicase domain protein n=4 Tax=Hy... 583 e-165 UniRef50_P25888 ATP-dependent RNA helicase rhlE n=363 Tax=root R... 580 e-164 UniRef50_D2QWU0 DEAD/DEAH box helicase domain protein n=1 Tax=Pi... 578 e-163 UniRef50_Q82T78 RhlE; ATP-dependent RNA helicase RhlE n=1 Tax=Ni... 578 e-163 UniRef50_B0SU57 ATP-dependent RNA helicase, DEAD-box family (Dea... 578 e-163 UniRef50_C4ZJL9 DEAD/DEAH box helicase domain protein n=1 Tax=Th... 578 e-163 UniRef50_A8TFK3 DEAD/DEAH box helicase domain protein n=1 Tax=Me... 577 e-163 UniRef50_C5PZD1 ATP-dependent RNA helicase n=5 Tax=Bacillales Re... 576 e-163 UniRef50_Q126W4 DEAD/DEAH box helicase-like n=153 Tax=Bacteria R... 576 e-163 UniRef50_Q5HME0 Probable DEAD-box ATP-dependent RNA helicase SER... 575 e-162 UniRef50_Q30PP0 DEAD/DEAH box helicase-like protein n=11 Tax=Bac... 573 e-162 UniRef50_Q2SZW4 ATP-dependent RNA helicase RhlE n=104 Tax=Proteo... 572 e-161 UniRef50_P42305 ATP-dependent RNA helicase dbpA n=99 Tax=Firmicu... 572 e-161 UniRef50_C4G990 Putative uncharacterized protein n=1 Tax=Shuttle... 572 e-161 UniRef50_Q0AFH3 DEAD/DEAH box helicase domain protein n=1 Tax=Ni... 571 e-161 UniRef50_B1CAG5 Putative uncharacterized protein n=1 Tax=Anaerof... 570 e-161 UniRef50_C5CU85 DEAD/DEAH box helicase domain protein n=10 Tax=C... 570 e-161 UniRef50_A9NFK0 ATP-dependent RNA helicase, superfamily II n=1 T... 569 e-160 UniRef50_Q0HYG8 DEAD/DEAH box helicase domain protein n=78 Tax=B... 568 e-160 UniRef50_O26305 ATP-dependent RNA helicase, eIF-4A family n=1 Ta... 566 e-160 UniRef50_Q3AFI3 ATP-dependent RNA helicase, DEAD box family n=1 ... 566 e-160 UniRef50_B4WCQ8 DEAD/DEAH box helicase domain protein n=1 Tax=Br... 566 e-160 UniRef50_A9GRX1 DeaD2 protein n=5 Tax=Bacteria RepID=A9GRX1_SORC5 566 e-159 UniRef50_C5SI45 DEAD/DEAH box helicase domain protein n=1 Tax=As... 565 e-159 UniRef50_D2QGG1 DEAD/DEAH box helicase domain protein n=2 Tax=Ba... 565 e-159 UniRef50_C6WW85 DEAD/DEAH box helicase domain protein n=1 Tax=Me... 565 e-159 UniRef50_C7PD17 DEAD/DEAH box helicase domain protein n=139 Tax=... 564 e-159 UniRef50_B8I5B1 DEAD/DEAH box helicase domain protein n=2 Tax=Cl... 564 e-159 UniRef50_UPI00016C0D94 ATP-dependent RNA helicase n=1 Tax=Epulop... 562 e-158 UniRef50_C8WFI7 DEAD/DEAH box helicase domain protein n=3 Tax=Zy... 562 e-158 UniRef50_A9KIB7 DEAD/DEAH box helicase domain protein n=1 Tax=Cl... 561 e-158 UniRef50_B0SEU1 Superfamily II DNA and RNA helicase n=5 Tax=cell... 561 e-158 UniRef50_A7IK90 DEAD/DEAH box helicase domain protein n=36 Tax=A... 561 e-158 UniRef50_C6XMJ7 DEAD/DEAH box helicase domain protein n=23 Tax=B... 560 e-158 UniRef50_D2MPZ3 Putative ATP-dependent RNA helicase RhlE n=1 Tax... 559 e-157 UniRef50_Q2BP56 Putative ATP-dependent RNA helicase n=1 Tax=Nept... 559 e-157 UniRef50_A6TTG0 DEAD/DEAH box helicase domain protein n=28 Tax=F... 558 e-157 UniRef50_Q17W71 ATP-dependent RNA helicase n=19 Tax=Helicobacter... 558 e-157 UniRef50_B7VQT9 ATP-dependent RNA helicase n=15 Tax=Bacteria Rep... 558 e-157 UniRef50_C0ZI64 Putative ATP-dependent RNA helicase n=1 Tax=Brev... 556 e-157 UniRef50_B8ILJ8 DEAD/DEAH box helicase domain protein n=10 Tax=A... 556 e-157 UniRef50_C1D673 RhlE3 n=1 Tax=Laribacter hongkongensis HLHK9 Rep... 555 e-156 UniRef50_C9RPH4 DEAD/DEAH box helicase domain protein n=1 Tax=Fi... 555 e-156 UniRef50_UPI0001C311D7 DEAD/DEAH box helicase domain protein n=1... 555 e-156 UniRef50_B3RIS6 Putative uncharacterized protein n=1 Tax=Trichop... 554 e-156 UniRef50_D2QY81 DEAD/DEAH box helicase domain protein n=1 Tax=Pi... 553 e-156 UniRef50_C7JBN9 DNA/RNA helicase n=19 Tax=cellular organisms Rep... 553 e-156 UniRef50_B3QTY3 DEAD/DEAH box helicase domain protein n=1 Tax=Ch... 553 e-156 UniRef50_C5LBR0 RNA helicase, putative n=4 Tax=Perkinsus marinus... 553 e-156 UniRef50_B5EAF1 DEAD/DEAH box helicase domain protein n=3 Tax=De... 551 e-155 UniRef50_P24783 ATP-dependent RNA helicase DBP2 n=131 Tax=Eukary... 551 e-155 UniRef50_C5TNR4 Dead/deah box helicase n=8 Tax=Neisseriaceae Rep... 551 e-155 UniRef50_B8FPB9 DEAD/DEAH box helicase domain protein n=12 Tax=B... 550 e-155 UniRef50_A5UZK3 DEAD/DEAH box helicase domain protein n=8 Tax=Ba... 550 e-155 UniRef50_A8IAJ3 Helicase n=4 Tax=Alphaproteobacteria RepID=A8IAJ... 550 e-155 UniRef50_UPI00016C5336 ATP-dependent RNA helicase n=1 Tax=Gemmat... 550 e-155 UniRef50_P24782 ATP-dependent RNA helicase dbp2 n=63 Tax=Eukaryo... 550 e-155 UniRef50_A7K2L3 ATP-dependent RNA helicase n=17 Tax=Vibrionaceae... 549 e-154 UniRef50_D0LYA3 DEAD/DEAH box helicase domain protein n=1 Tax=Ha... 549 e-154 UniRef50_Q6MN50 ATP-dependent RNA helicase n=1 Tax=Bdellovibrio ... 548 e-154 UniRef50_Q8MZI3 CG10077, isoform A n=15 Tax=Eukaryota RepID=Q8MZ... 548 e-154 UniRef50_Q0BSI7 ATP-dependent RNA helicase n=54 Tax=Alphaproteob... 548 e-154 UniRef50_Q1J0S9 DEAD/DEAH box helicase-like protein n=2 Tax=Dein... 548 e-154 UniRef50_A5G1U8 DEAD/DEAH box helicase domain protein n=7 Tax=Al... 547 e-154 UniRef50_C6CYC6 DEAD/DEAH box helicase domain protein n=89 Tax=F... 547 e-154 UniRef50_Q4FSS4 Possible ATP-dependent DEAD/DEAH box RNA-helicas... 546 e-153 UniRef50_A9M0D7 ATP-dependent RNA helicase, putative n=21 Tax=Ne... 546 e-153 UniRef50_B6YWR7 DEAD/DEAH box RNA helicase n=3 Tax=Thermococcus ... 545 e-153 UniRef50_Q0G0P8 Superfamily II DNA and RNA helicase n=1 Tax=Fulv... 544 e-153 UniRef50_Q2NB74 DNA and RNA helicase n=7 Tax=Alphaproteobacteria... 544 e-153 UniRef50_D2L498 DEAD/DEAH box helicase domain protein n=1 Tax=De... 543 e-153 UniRef50_C6ATS7 DEAD/DEAH box helicase domain protein n=15 Tax=A... 543 e-153 UniRef50_C1AE59 ATP-dependent RNA helicase RhlE n=1 Tax=Gemmatim... 543 e-153 UniRef50_C8WL27 DEAD/DEAH box helicase domain protein n=3 Tax=Eg... 543 e-153 UniRef50_A6LUG3 DEAD/DEAH box helicase domain protein n=33 Tax=F... 543 e-153 UniRef50_Q12QV2 DEAD/DEAH box helicase-like protein n=27 Tax=Gam... 543 e-153 UniRef50_B0SYC6 DEAD/DEAH box helicase domain protein n=33 Tax=A... 543 e-152 UniRef50_A3WBD4 DNA and RNA helicase n=1 Tax=Erythrobacter sp. N... 542 e-152 UniRef50_Q92841 Probable ATP-dependent RNA helicase DDX17 n=25 T... 542 e-152 UniRef50_Q3AZR1 DEAD/DEAH box helicase-like n=2 Tax=Synechococcu... 542 e-152 UniRef50_Q2RQT0 DEAD/DEAH box helicase n=59 Tax=root RepID=Q2RQT... 542 e-152 UniRef50_B6R5V0 ATP-dependent rna helicase, dead/deah box family... 542 e-152 UniRef50_Q54CE0 Probable ATP-dependent RNA helicase ddx17 n=2 Ta... 541 e-152 UniRef50_C7MN05 DNA/RNA helicase, superfamily II n=1 Tax=Cryptob... 541 e-152 UniRef50_Q9SQV1 DEAD-box ATP-dependent RNA helicase 40 n=14 Tax=... 541 e-152 UniRef50_B5IG60 DEAD/DEAH box helicase domain protein n=2 Tax=Ac... 540 e-152 UniRef50_C8PWG8 Cold-shock DEAD box protein A homolog n=1 Tax=En... 540 e-151 UniRef50_Q7UJ92 Putative ATP-dependent RNA helicase rhlE n=1 Tax... 539 e-151 UniRef50_D0MH79 DEAD/DEAH box helicase domain protein n=1 Tax=Rh... 539 e-151 UniRef50_B2S409 ATP-dependent RNA helicase n=3 Tax=Treponema Rep... 539 e-151 UniRef50_C4XQY7 ATP-dependent RNA helicase n=7 Tax=Deltaproteoba... 539 e-151 UniRef50_Q485D3 ATP-dependent RNA helicase, DEAD box family n=24... 539 e-151 UniRef50_B6BTD3 Dead/deah box helicase domain protein n=1 Tax=be... 538 e-151 UniRef50_Q28T45 DEAD/DEAH box helicase-like protein n=18 Tax=Alp... 538 e-151 UniRef50_Q24I45 DEAD/DEAH box helicase family protein n=2 Tax=Te... 538 e-151 UniRef50_A0RP33 Putative ATP-dependent RNA helicase RhlE n=2 Tax... 538 e-151 UniRef50_P17844 Probable ATP-dependent RNA helicase DDX5 n=52 Ta... 538 e-151 UniRef50_Q3SF48 DEAD/DEAH box helicase n=7 Tax=cellular organism... 538 e-151 UniRef50_C6Q9Z2 DEAD/DEAH box helicase domain protein n=1 Tax=Hy... 538 e-151 UniRef50_Q1ECV0 LOC556764 protein (Fragment) n=21 Tax=Eukaryota ... 537 e-151 UniRef50_A3ZWP8 ATP-dependent RNA helicase n=1 Tax=Blastopirellu... 537 e-151 UniRef50_C1I2P2 ATP-dependent RNA helicase DeaD n=1 Tax=Clostrid... 537 e-151 UniRef50_UPI0000E87E35 putative ATP-dependent RNA helicase prote... 536 e-151 UniRef50_Q0K893 ATP-dependent RNA helicase n=129 Tax=Proteobacte... 536 e-151 UniRef50_Q0B215 DEAD/DEAH box helicase domain protein n=8 Tax=Pr... 536 e-150 UniRef50_C6C1F3 DEAD/DEAH box helicase domain protein n=2 Tax=De... 536 e-150 UniRef50_B2UL73 DEAD/DEAH box helicase domain protein n=1 Tax=Ak... 536 e-150 UniRef50_Q5JKF2 DEAD-box ATP-dependent RNA helicase 40 n=11 Tax=... 536 e-150 UniRef50_A7HDE9 DEAD/DEAH box helicase domain protein n=1 Tax=An... 535 e-150 UniRef50_C4Q0V4 DEAD box ATP-dependent RNA helicase, putative n=... 535 e-150 UniRef50_A9KIC2 DEAD/DEAH box helicase domain protein n=5 Tax=Fi... 535 e-150 UniRef50_A2QC74 ATP-dependent RNA helicase dbp2 n=35 Tax=Eukaryo... 535 e-150 UniRef50_B5ESS9 Dead/deah box heliCase domain/helicase conserved... 535 e-150 UniRef50_A5VCX7 DEAD/DEAH box helicase domain protein n=4 Tax=Al... 534 e-150 UniRef50_A3EUK2 Putative ATP-dependent helicase n=2 Tax=Leptospi... 534 e-150 UniRef50_C6HUU6 Putative ATP-dependent helicase n=1 Tax=Leptospi... 534 e-150 UniRef50_B7EQA6 cDNA clone:J023079L21, full insert sequence n=5 ... 533 e-150 UniRef50_Q5N7W4 DEAD-box ATP-dependent RNA helicase 30 n=3 Tax=O... 533 e-150 UniRef50_Q2BDP3 ATP-dependent RNA helicase n=2 Tax=Bacillus RepI... 533 e-150 UniRef50_Q1D015 ATP-dependent helicase, DEAD/DEAH-box family n=6... 533 e-150 UniRef50_A1B2U6 DEAD/DEAH box helicase domain protein n=23 Tax=R... 533 e-149 UniRef50_Q88NB7 ATP-dependent RNA helicase rhlB n=50 Tax=Gammapr... 532 e-149 UniRef50_B1ZWV2 DEAD/DEAH box helicase domain protein n=9 Tax=Ve... 532 e-149 UniRef50_Q58083 Probable ATP-dependent RNA helicase MJ0669 n=29 ... 532 e-149 UniRef50_D1H3Q8 Whole genome shotgun sequence of line PN40024, s... 532 e-149 UniRef50_C7LND0 DEAD/DEAH box helicase domain protein n=1 Tax=De... 531 e-149 UniRef50_Q0C4R1 ATP-dependent RNA helicase, DEAD/DEAH box family... 531 e-149 UniRef50_C8P164 ATP-dependent RNA helicase DbpA n=1 Tax=Erysipel... 531 e-149 UniRef50_D1B384 DEAD/DEAH box helicase domain protein n=1 Tax=Su... 530 e-149 UniRef50_Q15T34 DEAD/DEAH box helicase-like n=1 Tax=Pseudoaltero... 529 e-148 UniRef50_C1TPC6 DNA/RNA helicase, superfamily II n=3 Tax=Synergi... 529 e-148 UniRef50_C1CWT4 Putative DEAD-box ATP-dependent RNA helicase 3 n... 529 e-148 UniRef50_C3RH47 ATP-dependent RNA helicase RhlE n=2 Tax=Bacteria... 529 e-148 UniRef50_A9A5S3 DEAD/DEAH box helicase domain protein n=5 Tax=Th... 529 e-148 UniRef50_D1B8Z1 DEAD/DEAH box helicase domain protein n=1 Tax=Th... 529 e-148 UniRef50_A2EVI2 DEAD/DEAH box helicase family protein n=1 Tax=Tr... 528 e-148 UniRef50_C5CB97 DNA/RNA helicase, superfamily II n=23 Tax=Bacter... 528 e-148 UniRef50_Q6A841 Putative ATP-dependent RNA helicase n=2 Tax=Prop... 528 e-148 UniRef50_B5ZGC1 DEAD/DEAH box helicase domain protein n=3 Tax=Ac... 528 e-148 UniRef50_B6IS62 DEAD/DEAH box helicase protein n=1 Tax=Rhodospir... 528 e-148 UniRef50_D1Y000 ATP-dependent RNA helicase DeaD family protein n... 528 e-148 UniRef50_UPI00006CD03A P68-like protein, putative n=1 Tax=Tetrah... 527 e-148 UniRef50_Q1CXY8 ATP-independent RNA helicase DbpA n=3 Tax=Deltap... 527 e-148 UniRef50_Q98RE0 ATP-DEPENDENT RNA HELICASE n=1 Tax=Mycoplasma pu... 527 e-148 UniRef50_A6NSW7 Putative uncharacterized protein n=1 Tax=Bactero... 526 e-148 UniRef50_C6WM51 DEAD/DEAH box helicase domain protein n=83 Tax=A... 526 e-148 UniRef50_D2B0M6 Putative uncharacterized protein n=1 Tax=Strepto... 526 e-148 Sequences not found previously or not previously below threshold: UniRef50_D1INE6 Whole genome shotgun sequence of line PN40024, s... 537 e-151 UniRef50_A3FQ59 Putative uncharacterized protein n=1 Tax=Cryptos... 530 e-149 UniRef50_C4QFR3 DEAD box ATP-dependent RNA helicase, putative n=... 529 e-148 UniRef50_D1I3Q7 Whole genome shotgun sequence of line PN40024, s... 528 e-148 >UniRef50_P0A9P7 Cold-shock DEAD box protein A n=201 Tax=Bacteria RepID=DEAD_ECOL6 Length = 629 Score = 933 bits (2412), Expect = 0.0, Method: Composition-based stats. Identities = 629/629 (100%), Positives = 629/629 (100%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF Sbjct: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 Query: 61 SLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 SLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR Sbjct: 61 SLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG Sbjct: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL Sbjct: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI Sbjct: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 Query: 361 ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELD 420 ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELD Sbjct: 361 ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELD 420 Query: 421 LETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRER 480 LETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRER Sbjct: 421 LETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRER 480 Query: 481 RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGE 540 RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGE Sbjct: 481 RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGE 540 Query: 541 VLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERREGGRGD 600 VLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERREGGRGD Sbjct: 541 VLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERREGGRGD 600 Query: 601 GRRFSGERREGRAPRRDDSTGRRRFGGDA 629 GRRFSGERREGRAPRRDDSTGRRRFGGDA Sbjct: 601 GRRFSGERREGRAPRRDDSTGRRRFGGDA 629 >UniRef50_A2SQE1 DEAD/DEAH box helicase domain protein n=17 Tax=cellular organisms RepID=A2SQE1_METLZ Length = 656 Score = 758 bits (1957), Expect = 0.0, Method: Composition-based stats. Identities = 247/654 (37%), Positives = 360/654 (55%), Gaps = 49/654 (7%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 M E +T FA+ + +L+A+ D+G+E+P+PIQA IP +L+G+DV G AQTG+GKTAAF Sbjct: 1 MEETKT-FAEFAISEELLQAIGDMGFEEPTPIQAMAIPQILDGKDVTGQAQTGTGKTAAF 59 Query: 61 SLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 +P+++ LDP+ K Q LVL+PTRELA+Q AE + K+ +G+NVV +YGGQ + QLR Sbjct: 60 GIPIIERLDPDNKNVQALVLSPTRELAIQTAEEFSRLMKYKKGLNVVPIYGGQPIERQLR 119 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 AL+ Q+V+GTPGR++DH+KRGTL L ++ +LDEAD+ML MGF ED+E I P+ Sbjct: 120 ALKGTVQVVIGTPGRVIDHIKRGTLHLDSVTMFILDEADQMLDMGFREDIEDIFRDTPKD 179 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 QT LFSATMP+ I ITRRF ++PQ V+I T P I Q+Y V K EAL R L Sbjct: 180 RQTILFSATMPQPILDITRRFQRDPQFVKITRKELTVPQIEQTYIEVRERDKLEALCRTL 239 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 + + + A++F TK ++ ++ GY AL+GDM Q R++ + R + G +D+LI Sbjct: 240 DMNNPELALVFCNTKRTVDDLMSRMQARGYFVEALHGDMKQQQRDRVMARFRSGSIDVLI 299 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATDVAARG+DV+ + +V NYD+P D E YVHRIGRT RAGR G+++ FV RE LR+I Sbjct: 300 ATDVAARGIDVDDVDIVFNYDVPQDVEYYVHRIGRTARAGRTGKSVTFVAPREIYKLRDI 359 Query: 361 ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPT------A 414 +R K+ I + LP + + + + + F KV+ + + +L+ Y L+ ++ T Sbjct: 360 QRYAKIQIAKTPLPTLDDVAEMKQQIFLDKVRDIMAAGNLELYLPLVEQLLETETDVDSE 419 Query: 415 EGEELDLETLAAALLKMA--QGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDR 472 E+ +AAALLKM G+ P++P + G + + P Sbjct: 420 STSEITSIQVAAALLKMHLDSGKNAAQSEEIKPLQPSPSSSETFTPGTVENSGAEP---- 475 Query: 473 EDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIE 532 M +RI +G++ + + IVGA A E DI IG I L+ ++S ++ Sbjct: 476 ------------GMVRFRISLGKNQQIRPKDIVGAFAGECDIPGSSIGRIDLYNNYSYVD 523 Query: 533 LPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQP-----------------HTGGERRGGG 575 +P V + I + + + + P + G R G Sbjct: 524 VPLEHANLVAEVMGSKTIRGQELEISIAAPRTPEEEERERDRDRSGDRRGGSSGYRSGDR 583 Query: 576 RGFGGERREGGRNFSGERREGGRGDGRRFSGERREGRAPRR----DDSTGRRRF 625 GERR N G RG SG+R G RR S+ RR F Sbjct: 584 NSGSGERRSYNNNRGS---YGSRGGSNYRSGDRSSGSGERRSYGNSGSSDRRSF 634 >UniRef50_P44586 Cold-shock DEAD box protein A homolog n=29 Tax=Pasteurellaceae RepID=DEAD_HAEIN Length = 613 Score = 757 bits (1955), Expect = 0.0, Method: Composition-based stats. Identities = 387/624 (62%), Positives = 474/624 (75%), Gaps = 24/624 (3%) Query: 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 + TF DLGL IL+A++DLG+E PSPIQ CIPHLLNG DVLGMAQTGSGKTAAF+LPL Sbjct: 4 KITFNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPL 63 Query: 65 LQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 L +DP K PQ+LV+APTRELA+QVA+A F K+ +G +V LYGGQRYD+QLRAL+Q Sbjct: 64 LAQIDPSEKHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRALKQ 123 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 G Q+VVGTPGR+LDH++RGTL+LS+L +VLDEADEMLRMGFI+DVET+MA++PE HQTA Sbjct: 124 GAQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTA 183 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 LFSATMPE IRRIT+RFM +PQEV+I+ + PDI QS W V G+RKNEAL+RFLE ED Sbjct: 184 LFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVED 243 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 FDAAIIF RTK TL++ E LE+NG+ SAALNGDM Q LREQTL+RL++G LDI++ATDV Sbjct: 244 FDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATDV 303 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 AARG+D+ERISLVVNYDIP+D+ESYVHRIGRTGRAGR+GRALLFVE RERRLLRNIE M Sbjct: 304 AARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLM 363 Query: 365 KLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETL 424 K I EVELPN +L + R +KF AK+ +QLE DL+QYR+LL + + D E + Sbjct: 364 KKGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLF----TADQDQENI 419 Query: 425 AAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVG 484 AAA+L + QG++ LI+PPD PM +R R+R+DRG R N R E R+ + Sbjct: 420 AAAMLMLLQGKQKLILPPDPPMEKRR--RERNDRGDRRENPRSAERRGE---RKGYGNPQ 474 Query: 485 DMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQH 544 M LYRIEVGR DGVEVRHIVGAIANEGDI+SRYIG+IKL+ ++T+ELP+GMP E+LQ Sbjct: 475 PMDLYRIEVGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQGMPKELLQQ 534 Query: 545 FTRTRILNKPMNMQLLGDAQPHTG-------GERRGGGRGFGGER-REGGRNFSGERREG 596 F +TR+LNK M M LG + G+R+G G F GER RE G + G R+ Sbjct: 535 FAKTRVLNKQMQMSFLGAVKSDNSRGSDDFNGKRKGRGGDFRGERGRERGNDNRGNRKFN 594 Query: 597 GRGDGRRFSGERREGRAPRRDDST 620 + + R FS + PRRD + Sbjct: 595 EKSN-RTFSDK------PRRDRRS 611 >UniRef50_B4SPP3 DEAD/DEAH box helicase domain protein n=16 Tax=cellular organisms RepID=B4SPP3_STRM5 Length = 646 Score = 752 bits (1942), Expect = 0.0, Method: Composition-based stats. Identities = 311/641 (48%), Positives = 401/641 (62%), Gaps = 24/641 (3%) Query: 2 AEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFS 61 ++ + FA LGL +++A+ +GYE PSPIQA IP +L GRDVLG AQTG+GKTAAF+ Sbjct: 5 SQAQLQFAQLGLSESVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAFA 64 Query: 62 LPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 LP+L N+D + PQ LVLAPTRELA+QVAEA +S + G V+ +YGGQ Y QL A Sbjct: 65 LPVLSNIDLQQIKPQALVLAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQQLSA 124 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 LR+G IVVGTPGR++DHL R TLDLS+L LVLDEADEMLRMGFI+DVE ++ ++P Sbjct: 125 LRRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPAKR 184 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 Q ALFSATMP IRRI + ++++P EV I + TT +I Q YW V GM K +AL R LE Sbjct: 185 QVALFSATMPPQIRRIAQTYLQDPVEVTIAAKTTTSANIRQRYWWVSGMHKLDALTRILE 244 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 E FDA IIF RTK T E+A L+ G +AA+NGDM QA RE+T+ LK+G+LDIL+A Sbjct: 245 VEPFDAMIIFARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKLDILVA 304 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 TDVAARGLDVERIS V+NYDIP D+ESYVHRIGRTGRAGR+G A+LF RE+ +LR IE Sbjct: 305 TDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFATPREKGMLRQIE 364 Query: 362 RTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDL 421 R + I E++LP+ E + R+ KF +++ + L LD YR LL + + + Sbjct: 365 RATRQPIEEMQLPSVEAVNDNRINKFTSRITETLGQGGLDFYRQLLERFETEQN---VPA 421 Query: 422 ETLAAALLKMAQGERTLIV-PPDAPMRPKREFRDRDDRGPR----DRNDRGPRGDR---- 472 +AAAL KM QG+ ++ PP R +R R+R +R R DRN+RGPR +R Sbjct: 422 IEVAAALAKMMQGDTPFLLQPPVRAPREERAPRERFERTERPERGDRNERGPRFERGPRR 481 Query: 473 -------EDRPRRERRDVG----DMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGN 521 E RPRR+ G M+ YRI VG GV+ +IVGAIANE + SR+IG Sbjct: 482 DDAEGGFEQRPRRDVPPRGAPEQGMETYRISVGHQHGVKPANIVGAIANEAGLESRFIGR 541 Query: 522 IKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGE 581 I + S ++LP MP +VL H + + + + M+ L + R R F Sbjct: 542 IDIHDDFSLLDLPAQMPSDVLTHLQKVWVSGQQLQMRPLAAGEEINPAPRPFKPR-FDKR 600 Query: 582 RREGGRNFSGERREGGRGDGRRFSGERREGRAPRRDDSTGR 622 G G GD G R+ R PRRD R Sbjct: 601 GPGGPGGPRRSGPGGPGGDRGGDRGGDRDSRPPRRDGFKPR 641 >UniRef50_Q1MY97 DEAD/DEAH box helicase-like protein n=1 Tax=Bermanella marisrubri RepID=Q1MY97_9GAMM Length = 614 Score = 751 bits (1940), Expect = 0.0, Method: Composition-based stats. Identities = 299/626 (47%), Positives = 415/626 (66%), Gaps = 20/626 (3%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 M+E T FA LGL +L A+ + GYE+PSPIQ + IPHLL G+DVLG+AQTG+GKTAAF Sbjct: 1 MSESSTGFASLGLPFNLLRAIEEQGYEQPSPIQEQSIPHLLEGKDVLGLAQTGTGKTAAF 60 Query: 61 SLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 +LPLL E++ PQ+LVLAPTRELA QVA A+ +SKH V V ++YGG + Q R Sbjct: 61 TLPLLARTQNEVREPQVLVLAPTRELAQQVAMAVESYSKHESNVKVASIYGGSDFGSQFR 120 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 AL+QGPQ VVGTPGR++DH++RGTL L + +VLDEADEMLRMGFI+DV+ ++ Q+PE Sbjct: 121 ALKQGPQWVVGTPGRVMDHIRRGTLKLEGIRAVVLDEADEMLRMGFIDDVDWVLDQVPEK 180 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 Q ALFSATMP+ I+ + + ++EP E+RI+S T I Q YW V G+ KN+AL+R Sbjct: 181 RQIALFSATMPKQIKAVAEKHLREPTEIRIKSKTATNESIEQKYWLVKGVDKNQALLRIC 240 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 E +FDA ++FVRTK AT EVA+ + +G ALNGD+ QA RE+ ++RLK G++D+L+ Sbjct: 241 ETSEFDAMMVFVRTKQATEEVADYMRSHGLRCEALNGDVAQAQRERAVDRLKKGQVDMLV 300 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATDVAARGLDVERIS VVNYDIP D+ESYVHRIGRTGRAGR+G A+LFV RERR+L I Sbjct: 301 ATDVAARGLDVERISHVVNYDIPYDAESYVHRIGRTGRAGRSGEAILFVRPRERRMLSTI 360 Query: 361 ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELD 420 ER + I ++ELP A+ + +R ++F + + +E D++ ++ + S+I AE LD Sbjct: 361 ERVTRKKIQQIELPTAKEVNAKRRDQFKVRALEHIEGRDIEIFKKIASEIL--AEQPALD 418 Query: 421 LETLAAALLKMAQGERTLIV----PPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRP 476 LAAA +M+QG + L + P P + E +R +R + + E P Sbjct: 419 PIELAAAFAQMSQGNKPLFMDESEPRFKPETDRGERGERKERRNNSGREERKPIELEAMP 478 Query: 477 RRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKG 536 ++ DV +M+ YR+ VG DGV+ +IVGAIANE DI S++IG+I+++ + ++++LP G Sbjct: 479 LKDFPDV-EMRRYRLAVGYKDGVKPGNIVGAIANEADIESKFIGHIEIYDTFASVDLPSG 537 Query: 537 MPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERREG 596 MP E L H + R+ +P+N++ L + RG G G R G N G++ +G Sbjct: 538 MPEETLTHLKKARVCGRPINIEPLKN---------RGAGGGQKPRRNAKGGN-KGKKPQG 587 Query: 597 GRGDGRRFSGERREGRAPRRDDSTGR 622 RG + G + G+ R D R Sbjct: 588 ERGQNK---GGAKSGKPKRTGDRKPR 610 >UniRef50_A6T3R2 ATP-dependent RNA helicase n=86 Tax=Bacteria RepID=A6T3R2_JANMA Length = 778 Score = 748 bits (1933), Expect = 0.0, Method: Composition-based stats. Identities = 284/636 (44%), Positives = 395/636 (62%), Gaps = 20/636 (3%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 FADL L P+L L +LGYE PSPIQA IP LLN RDVLG AQTG+GKTA+F+LP+L Sbjct: 9 FADLKLSEPLLRVLQELGYESPSPIQAATIPLLLNNRDVLGQAQTGTGKTASFALPILAR 68 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 +D + PQ LVLAPTRELA+QVAEA ++ ++ G +V+ +YGGQ Y QL ALR+G Sbjct: 69 IDIKQTTPQALVLAPTRELAIQVAEAFQRYATYIPGFHVLPIYGGQSYGAQLSALRRGVH 128 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 +VVGTPGR++DHL++G+LDLS++ +VLDEADEMLRMGFI+DVETI+ + PE QTALFS Sbjct: 129 VVVGTPGRVIDHLEKGSLDLSRIKTMVLDEADEMLRMGFIDDVETILQKTPESRQTALFS 188 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 ATMP AI+RI ++++P + + + T +I Q YW V GM+K +AL R LEAE+FD Sbjct: 189 ATMPSAIKRIATTYLRDPDLITVAAKTGTADNIRQRYWLVSGMQKLDALTRILEAENFDG 248 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 IIF RTK T E+A L+ G+++AA+NGD+ Q RE+T+++LKDG++DIL+ATDVAAR Sbjct: 249 MIIFARTKLGTEELASKLQARGFSAAAINGDIQQQQRERTIQQLKDGKIDILVATDVAAR 308 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 GLDVERIS V+NYD+P D ESY HRIGRTGRAGR+G A+LF+ RER LL+ IER + Sbjct: 309 GLDVERISHVINYDVPHDPESYTHRIGRTGRAGRSGEAILFIAPRERNLLKAIERATRQP 368 Query: 368 IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAA 427 I +ELP+ E + R+ +F ++ + + + L+ + +L+ + + +AAA Sbjct: 369 ISVLELPSVEAVNDVRISRFKEQIAETIAAGGLEVFHSLIEDYER---EHNVPAVEIAAA 425 Query: 428 LLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPR----------DRNDRGPRGDREDRP- 476 L K+A+G+ L++ +R + D+ G R DR +RG R +R +RP Sbjct: 426 LAKLARGDVPLLLDKKNEVRERSWSDDKPVSGGRFERAERFERGDRPERGDRFERSERPA 485 Query: 477 -----RRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTI 531 R R MQ +RIEVG GV+ +IVGAIANE + S+YIG I+++ +ST+ Sbjct: 486 APRKERIPRAPDAGMQSFRIEVGHAHGVKPGNIVGAIANEASLDSKYIGRIEIYDDYSTL 545 Query: 532 ELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSG 591 +LP+ + E H + + +N+ GDA R F + Sbjct: 546 DLPENLSPEQFNHLKTVWVAGQQLNISREGDAP-AAAPARSANKPAFEKAVASEAAPAAK 604 Query: 592 ERREGGRGDGRRFSGERREGRAPRRDDSTGRRRFGG 627 R+ + R + R R G Sbjct: 605 PARKEVKERSERAAAPAAPVEVAAAPAKKERERKGS 640 Score = 111 bits (279), Expect = 8e-23, Method: Composition-based stats. Identities = 51/220 (23%), Positives = 89/220 (40%), Gaps = 7/220 (3%) Query: 390 KVQQQLESSDLDQYRAL--LSKIQPTAEGEELDLETLAAALLKMAQGERTLIVPPDAPMR 447 + + L + + + + + + A + K A + A Sbjct: 546 DLPENLSPEQFNHLKTVWVAGQQLNISREGDAPAAAPARSANKPAFEKAVASEAAPAAKP 605 Query: 448 PKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGA 507 ++E ++R +R + R + DM+ YR+EVG GV+ +IVGA Sbjct: 606 ARKEVKERSERAAAPAAPVEVAAAPAKKERERKGSGVDMEPYRVEVGHAHGVKPANIVGA 665 Query: 508 IANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNM---QLLGDAQ 564 IANE + ++YIG I++F +S ++LP GMP EV I + + + + Sbjct: 666 IANEAGLEAKYIGRIEIFDDYSLLDLPAGMPTEVFDQLKSVAIGTHKLRLSRSSVAPAPE 725 Query: 565 PHTGGERRGGGRGFGGERR--EGGRNFSGERREGGRGDGR 602 +G + GG+RR E GR+ + G GR Sbjct: 726 KTSGKKITLSAPNKGGDRRVAEKGRSSKAPSKRVGTMGGR 765 >UniRef50_Q3IJ60 ATP-dependent RNA helicase, cold shock protein A n=3 Tax=Alteromonadales RepID=Q3IJ60_PSEHT Length = 616 Score = 746 bits (1928), Expect = 0.0, Method: Composition-based stats. Identities = 319/625 (51%), Positives = 427/625 (68%), Gaps = 28/625 (4%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 M+E TF L L IL+A+ +LGY+ PS IQA+CIP LL +DVLG+AQTG+GKTAAF Sbjct: 1 MSE-PVTFESLNLSPAILKAVEELGYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAF 59 Query: 61 SLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 +LPLL N+DP +K PQILVL PTRELA+QVAEA ++KH+RG+ V+ALYGGQ Y +QL Sbjct: 60 ALPLLNNIDPSVKQPQILVLTPTRELAIQVAEAFEQYAKHVRGIEVLALYGGQSYSIQLS 119 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 ALR+G Q++V TPGRL+DH+ RGT+ L LVLDEADEMLRMGFI+DVE+IM + P Sbjct: 120 ALRRGAQVIVATPGRLIDHINRGTIKFDALQALVLDEADEMLRMGFIDDVESIMEKTPRE 179 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 QT LFSATMP+ I+ I+ ++M P++V I + +T + Q +W + KN+A+VRFL Sbjct: 180 KQTCLFSATMPKQIQNISSKYMNNPEQVHISARNSTVSSVEQVFWNAS-IHKNKAIVRFL 238 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 EAE ++ AI+FVRT+N T+++AE LER G+++A LNGDMNQ RE+T+ERLK G L+++I Sbjct: 239 EAEQYEGAIVFVRTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVERLKSGMLNVVI 298 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATDVAARGLDV+R+SLV+NYDIP DSE+YVHRIGRTGRAGR G+A+LFV++ ER LL+NI Sbjct: 299 ATDVAARGLDVDRLSLVINYDIPQDSEAYVHRIGRTGRAGRTGKAILFVKHNERYLLKNI 358 Query: 361 ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELD 420 R I +VELP A+++ ++R+E AK+ LE+ D+ + + + + A+ EL Sbjct: 359 IRHTNSDIAQVELPTAKIVEEKRIEALQAKLTLALENKDITFFNEVAANM---AQKLELS 415 Query: 421 LETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRN------------DRGP 468 E LA ALL +AQ + + V + RE +R+DR PR + +RG Sbjct: 416 AEDLAGALLCLAQQQSPIKV--EEVKIQPRERNERNDRNPRSNDRGDRGRRNERGGERGG 473 Query: 469 RGDREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASH 528 R RD G M YRIEVGR+ GV+V++IVGAIANE DISS++IG+I+L +H Sbjct: 474 ERAERKPRERNSRDAGPMDTYRIEVGREHGVQVKNIVGAIANEADISSKFIGDIRLHDNH 533 Query: 529 STIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRN 588 ST++LPK MP +VL HF + I +PM + + D P RG ER GG Sbjct: 534 STVQLPKNMPKDVLDHFQKVFICKRPMGLTITADQGPAEP-------RGERSERPAGGEK 586 Query: 589 FSGERREGGRGDGRRFSGERREGRA 613 S + + RGD R SG R+E R Sbjct: 587 RSFNKDDSARGDKR--SGPRKERRP 609 >UniRef50_C5S7U5 DEAD/DEAH box helicase domain protein n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S7U5_CHRVI Length = 662 Score = 741 bits (1914), Expect = 0.0, Method: Composition-based stats. Identities = 316/660 (47%), Positives = 412/660 (62%), Gaps = 50/660 (7%) Query: 3 EFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSL 62 E F LGL I +A+ +LGYE P+ IQ++CIPHLL GRD+LG AQTG+GKTAAF+L Sbjct: 6 ETSVGFDALGLSPVIAQAVKNLGYESPTAIQSQCIPHLLAGRDLLGQAQTGTGKTAAFAL 65 Query: 63 PLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 P+L LDP+L+ PQ+LVL PTRELA+QVAEA ++ ++G NV+ +YGGQ Y +QL L Sbjct: 66 PMLSRLDPDLRKPQVLVLTPTRELALQVAEAFQRYATDLKGFNVLPIYGGQGYGLQLSQL 125 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 ++ PQ++VGTPGR++DH++RGTL L + LVLDEADEML MGF ED++ I Q P Q Sbjct: 126 KRNPQVIVGTPGRVMDHIRRGTLALDSIRALVLDEADEMLNMGFAEDIDWIFDQAPAERQ 185 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 ALFSATMP AIRR+ + + +P EV+I ++ T I Q + V K + L R +E Sbjct: 186 VALFSATMPPAIRRVAQTRLVDPVEVKIAANSETVDTIEQHHCIVTRFHKLDVLTRIMEL 245 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 E FD +IFVRTKNAT E+A+ L+ +G+ + LNGDMNQ +RE+T+ERLK G+LD+L+AT Sbjct: 246 EPFDGLLIFVRTKNATTELADKLKAHGFAAEPLNGDMNQEMRERTVERLKQGQLDVLVAT 305 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 DVAARGLDVERIS VVNYDIP D +YVHRIGRTGRAGRAGRA+L VE RER LL++IER Sbjct: 306 DVAARGLDVERISHVVNYDIPTDPSAYVHRIGRTGRAGRAGRAILLVEPRERGLLKSIER 365 Query: 363 TMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLE 422 ++ IP +E P+A L + R+++F ++++ DLD + LL++I E E LD Sbjct: 366 VIRRPIPSMEPPSAAALSESRIDRFIGEIRKAQSEQDLDFFYRLLARISQEQEIEMLD-- 423 Query: 423 TLAAALLKMAQGERTLIVPPDAPMRPKR------------------------------EF 452 +AAAL + Q ER L V D P PKR + Sbjct: 424 -IAAALAYLNQRERPLNVKEDPPRPPKRFDERGERGRGRDGDRRQGGWEDRPPRRERFDE 482 Query: 453 RDRDDRGPRDRNDRGPRGDREDRPRR--ERRDVGDMQLYRIEVGRDDGVEVRHIVGAIAN 510 RD + R R DR R +R +RP R RRD D+ YRIEVG GV R IVGAIAN Sbjct: 483 RDGNRDERRPRFDRAERSERPERPERGQPRRDDADLTSYRIEVGHQHGVSPREIVGAIAN 542 Query: 511 EGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGE 570 E + RYIG I + HS ++LPKGMP EV QH R + + + + ++ Sbjct: 543 ESGLEGRYIGRIDIRDDHSVVDLPKGMPNEVFQHLKRVYVRGQALRITPADESA------ 596 Query: 571 RRGGGRGFGGERREGGRNFSGERREGGRGDGR---RFSGERREGRAPRRDDSTGRRRFGG 627 G G+G EG R+ SG RE R F R+G APRR S+G+ GG Sbjct: 597 --GAGQGGAW---EGRRDRSGPPRERDSRPPRAGGDFQRRDRDGYAPRR-PSSGKSNDGG 650 >UniRef50_Q5NZY2 ATP-dependent RNA helicase DeaD n=12 Tax=Bacteria RepID=Q5NZY2_AZOSE Length = 658 Score = 741 bits (1914), Expect = 0.0, Method: Composition-based stats. Identities = 310/616 (50%), Positives = 407/616 (66%), Gaps = 11/616 (1%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 M +FA L L+AP+L+AL+++GYE PSPIQA CIPHLL G D+LG AQTG+GKTAAF Sbjct: 39 MTSPIESFAQLDLRAPLLDALSEIGYETPSPIQAICIPHLLAGHDLLGEAQTGTGKTAAF 98 Query: 61 SLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 +LPLL LD +K PQ+LVLAPTRELA+QVAEA ++K++ G +V+ +YGGQ VQLR Sbjct: 99 ALPLLDRLDLAVKNPQVLVLAPTRELAIQVAEAFQRYAKNLPGFHVLPVYGGQSMVVQLR 158 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 L +G ++VGTPGR++DH++R +L+L L+ LVLDEADEMLRMGFI+DVE I+ P Sbjct: 159 QLARGAHVIVGTPGRVMDHIERKSLNLDSLTTLVLDEADEMLRMGFIDDVEWILQHTPAE 218 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 QTALFSATMP+AIRR+ R+++EP+EV+I++S TT Q Y + K +AL R L Sbjct: 219 RQTALFSATMPDAIRRVAHRYLREPREVKIKASTTTVSTTRQRYCQISVAHKLDALTRIL 278 Query: 241 E-AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299 E EDFDAAIIFVRTK AT+E+A+ LE GY++AALNGDM Q LRE+ +E+LK G+LDI+ Sbjct: 279 EVEEDFDAAIIFVRTKTATVELADKLEARGYSAAALNGDMTQQLRERVIEQLKGGQLDIV 338 Query: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359 +ATDVAARGLDV RIS V+NYDIP D+E+YVHRIGRTGRAGR G A+LFV RE R+L+ Sbjct: 339 VATDVAARGLDVSRISHVINYDIPYDTEAYVHRIGRTGRAGRTGSAILFVAPREMRMLKV 398 Query: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEL 419 IER + I ++LP+ E + +R+ F +V LES DL +R +++ ++ T E E Sbjct: 399 IERATRQPIEALQLPSREAVADKRVAAFRQQVATVLESEDLAFFRDVVAGMESTHEAE-- 456 Query: 420 DLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRE 479 L +AAAL +AQ ER L +P R R + G +R PR +R+ R Sbjct: 457 -LHDIAAALAFLAQRERPLQLPESKGPDIARLPEPRREPGA----ERAPRENRDKILERR 511 Query: 480 R-RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMP 538 R G++Q YRIEVGR+ + IVGAIANE I SRYIG I L+ +ST+ELP +P Sbjct: 512 REFSEGNLQRYRIEVGRNQQATPKDIVGAIANEAGIESRYIGQINLYEDYSTVELPSALP 571 Query: 539 GEVLQHFTRTRILNKPMNMQLLGDAQPHTGGER-RGGGRGFGGERREGGRNFSGERREGG 597 +VL R R+ +N++ L + R R G G R + G Sbjct: 572 HDVLDILRRVRVRQHQLNIRPLDAEEAKRDAARVRPGAPRPGAAPRHAAHP-GSKPAHPG 630 Query: 598 RGDGRRFSGERREGRA 613 R R FS E+R Sbjct: 631 RVGPRSFSSEKRTPSP 646 >UniRef50_Q7UG20 ATP-dependent RNA helicase n=2 Tax=Bacteria RepID=Q7UG20_RHOBA Length = 931 Score = 740 bits (1912), Expect = 0.0, Method: Composition-based stats. Identities = 276/628 (43%), Positives = 392/628 (62%), Gaps = 15/628 (2%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F DL L+A + +A+ GY+KP+PIQAE IP++L+GRDVL +QTG+GKTAAF+LP+L Sbjct: 306 FRDLDLRAEVQKAVAASGYDKPTPIQAEIIPYMLDGRDVLAQSQTGTGKTAAFALPILSR 365 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 +D + PQ+LVLAPTRELA+QVA + T + + G V A+YGGQ Y+ QL+ LR+G Q Sbjct: 366 VDVRSRRPQVLVLAPTRELAIQVARSFTKYGADLSGFQVAAIYGGQDYEPQLKQLRRGVQ 425 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 +VVGTPGR++DH+KRGTLDL L LVLDEADEML MGF+EDV+ ++ + PEG Q ALFS Sbjct: 426 VVVGTPGRVIDHVKRGTLDLGSLDCLVLDEADEMLNMGFLEDVQFVLEKSPEGRQVALFS 485 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 AT+P+ IR+I ++ +P + I+S T + Q V K +AL R LE E+ D Sbjct: 486 ATLPKPIRKIADEYLNDPARITIKSKTITAASVRQRALFVSPRDKIDALTRILEVEETDG 545 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 I+F +TK++TL VAE L + G+++ ALNGDM Q +RE+T+++LK G+LD+L+ATDVAAR Sbjct: 546 VIVFTKTKDSTLSVAEKLSQQGFSAIALNGDMPQKVRERTIDQLKRGQLDVLVATDVAAR 605 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 GLDV RIS V N+D+P DSESYVHRIGRTGRAGR+G+A++F+ N +RR LR IE T K Sbjct: 606 GLDVPRISHVFNFDLPHDSESYVHRIGRTGRAGRSGQAIIFLTNAQRRQLRFIENTTKQP 665 Query: 368 IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAA 427 I +++P + + R+ +F ++ DL Y+ ++++ AE +E +AAA Sbjct: 666 IEIIDIPTVADINEARVRRFKQRITDVSADQDLTVYKDMIAQY---AEESGKPMEMIAAA 722 Query: 428 LLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDR-----EDRPRRERRD 482 L +M+Q R ++ + RE DRD+ RD D R +DRPRR + Sbjct: 723 LAEMSQNGRPFLLKERPKKQ--RERSDRDNSRGRDSFDSNDRSGNRGSFGDDRPRRPKGR 780 Query: 483 -----VGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM 537 M YR++VG DGV+ +IVGA+ANE I YIG I + SH+ I+LP+GM Sbjct: 781 PLTPVKEGMTRYRLDVGWQDGVKPGNIVGAVANEAGIDGEYIGPINIRDSHTLIDLPEGM 840 Query: 538 PGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERREGG 597 P ++ Q +T + K +N++ GD G+ G R+ G + Sbjct: 841 PSDIYQTLRKTWVAGKRLNLEEAGDVVDDFEGDGGRSNFRKEGFRKGKFSGNGGSGGKNF 900 Query: 598 RGDGRRFSGERREGRAPRRDDSTGRRRF 625 G R F + R + G+++F Sbjct: 901 SGGKRSFGNKSRNNGSTAPTAKRGKKKF 928 >UniRef50_C4LJP9 ATP-dependent RNA helicase n=15 Tax=Bacteria RepID=C4LJP9_CORK4 Length = 823 Score = 729 bits (1883), Expect = 0.0, Method: Composition-based stats. Identities = 287/575 (49%), Positives = 380/575 (66%), Gaps = 7/575 (1%) Query: 19 EALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQIL 78 A+ +G+E PSPIQA IP L GRDV+G+AQTG+GKTAAF+LP+L LD K PQ L Sbjct: 167 RAVKKVGFETPSPIQAATIPILAQGRDVVGLAQTGTGKTAAFALPILSRLDRSQKKPQAL 226 Query: 79 VLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLD 138 VL+PTRELA+QVA+A +F+ H+ GV+V+ +YGGQ Y +QL LR+G IVVGTPGR++D Sbjct: 227 VLSPTRELALQVADAFQEFADHLGGVHVLPIYGGQSYGIQLSGLRRGAHIVVGTPGRVID 286 Query: 139 HLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRIT 198 HL+RG+LDLS+L LVLDEADEML MGF EDVE I+A PE QTALFSATMP +IRR++ Sbjct: 287 HLERGSLDLSELKYLVLDEADEMLNMGFQEDVERILADTPEHKQTALFSATMPASIRRLS 346 Query: 199 RRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNAT 258 ++++++P+EV I+S T +I Q Y V K +AL R LE +FDA I+F RTK T Sbjct: 347 KQYLEDPREVTIKSQQRTADNIHQQYLLVNHHYKLDALTRILEVTEFDAMIMFARTKQNT 406 Query: 259 LEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVV 318 E+AE L G+++AA+NGDM Q RE+T+++L+DGRLDIL+ATDVAARGLDVERIS VV Sbjct: 407 EELAEKLRARGFSAAAINGDMAQNQRERTVDQLRDGRLDILVATDVAARGLDVERISHVV 466 Query: 319 NYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAEL 378 NYDIP D+ESYVHRIGRTGRAGR+G A+LFV RERRLLR+IER K +I E++LP + Sbjct: 467 NYDIPHDTESYVHRIGRTGRAGRSGEAILFVTPRERRLLRSIERATKSSIEEMQLPTVDE 526 Query: 379 LGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAALLKMAQGERTL 438 + + R KFA + + L +D +R L++ AE E L +AAAL +Q Sbjct: 527 VNETRKAKFAQSITESLADPQVDLFRGLINSY---AEEHETPLADIAAALATQSQSGDEF 583 Query: 439 IVPPDAPMRPKREFRDRDDRGPRDRNDR--GPRGDREDRPRRERRDVGDMQLYRIEVGRD 496 ++ D R R R R R+ + R R ++ PR R +M +Y+I VG+ Sbjct: 584 LLKEDTIRRNDRRNDRRGRRNDREPDTRSLNERFSGKEPPRFTDRTGKEMAVYKIAVGKR 643 Query: 497 DGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMN 556 V IVGAIANEG ++SR G I +F+ HS +ELP +P EV + TR+ + + Sbjct: 644 QQVRPGAIVGAIANEGGLNSRDFGKISIFSEHSLVELPADLPMEVFEALEDTRVSGQLIK 703 Query: 557 MQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSG 591 ++ A G + G+RR G N G Sbjct: 704 IEPDPGAPAGRPGAHK--RDRQSGDRRGGRFNDRG 736 >UniRef50_D2NRF7 Superfamily II DNA and RNA helicase n=3 Tax=Bacteria RepID=D2NRF7_9MICC Length = 732 Score = 728 bits (1880), Expect = 0.0, Method: Composition-based stats. Identities = 295/660 (44%), Positives = 401/660 (60%), Gaps = 56/660 (8%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F DLGL A +L AL ++GYEKPSPIQ + IP LL G DV+G+AQTG+GKTAAF+LP L Sbjct: 63 FTDLGLDARVLAALEEVGYEKPSPIQEQTIPLLLEGHDVVGLAQTGTGKTAAFALPALSR 122 Query: 68 ------LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 ++ + Q+LVLAPTRELA+QVAEA + ++ HM V+ +YGG Y QL Sbjct: 123 MAELADINGVSRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQLAG 182 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 LR+G Q+VVGTPGR++DHL++G+LDLS L LVLDEADEMLRMGF EDVE I+ P+ Sbjct: 183 LRRGAQVVVGTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVEKILEGTPDSK 242 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 Q ALFSATMP +IR+I ++++ +P+EVR+++ TT +ISQ Y V K +A+ R LE Sbjct: 243 QVALFSATMPNSIRKIAQQYLNDPREVRVKAKTTTSSNISQRYMQVMHSHKLDAMTRVLE 302 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 E++D I+FVRTK T EVA+ L+ G+ +AA+NGD+ Q LRE+T++ L+DGR+DIL+A Sbjct: 303 VENYDGIIVFVRTKKETEEVADKLKARGFAAAAINGDIPQQLRERTVDALRDGRIDILVA 362 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 TDVAARGLDVERISLVVNYDIP D+ESYVHRIGRTGRAGR G A+LFV RE+ +LR IE Sbjct: 363 TDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGREGAAILFVTPREKYMLRQIE 422 Query: 362 RTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDL 421 + + + + +P AE + + R ++FA ++ + +ES DL +R ++ + + Sbjct: 423 KATRQKVEPMHMPTAEAVNETRKQRFAQQITETIESEDLSFFRQIIEDYEN---EHDTTA 479 Query: 422 ETLAAALLKMAQGERTLIVPPDAPMRPK-REFRDRDDRGPRDRNDRGPRGDREDRPRRER 480 E +AAAL +AQ R + + K R F D D DR R + Sbjct: 480 EDIAAALAVIAQQGRPFFLDESEDIAHKSRPFSDED-------------SDRGGRKAKRA 526 Query: 481 RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGE 540 + M Y++ VGR V IVGA+ANEG I IG+I + + + LP+ +P + Sbjct: 527 HNDEGMVNYKLNVGRSSRVTAGAIVGALANEGGIKGSQIGSIDIRQHFTIVGLPEDLPRD 586 Query: 541 VLQHFTRTRILNKPMNMQLLGDAQPHTGGERRG-------------GGRGFGGE------ 581 T+I + +N++ + GG G GGR FGG Sbjct: 587 FFDRLRDTKIAGEFINIRKDNGPKGGGGGRGFGGGRREGGYRGNREGGRDFGGRDNRREG 646 Query: 582 ----RREGGRNFSGE-----RREGGRGDGRRFSGERREGRAPRRD-----DSTGRRRFGG 627 R+GGR+F G+ R GG+ + R F G GR RRD + G R FGG Sbjct: 647 GYRGNRDGGRDFGGDRDFKRRDFGGKRNDRDFGGRDFGGRDNRRDGGYRGNRDGGRDFGG 706 >UniRef50_C8WWM6 DEAD/DEAH box helicase domain protein n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WWM6_ALIAD Length = 541 Score = 721 bits (1861), Expect = 0.0, Method: Composition-based stats. Identities = 225/566 (39%), Positives = 331/566 (58%), Gaps = 37/566 (6%) Query: 2 AEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFS 61 E ++F GL +L+A++D+G+E+PSPIQA CIP +L GRDV+G AQTG+GKTAAF Sbjct: 13 VESMSSFESFGLNRRVLQAIHDMGFEEPSPIQAACIPVVLEGRDVIGQAQTGTGKTAAFG 72 Query: 62 LPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 +PL++ + E + Q +VL PTRELA+QVA + +K+ R V V +YGGQ Q+RA Sbjct: 73 IPLVERVSTEPR-VQAIVLTPTRELAIQVAGEIRKIAKYKR-VRSVPIYGGQSIVHQIRA 130 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 L+QG QIV+GTPGR+LDH+ RGTL LS + +VLDEADEML MGFI+D+E I+ + P Sbjct: 131 LKQGVQIVIGTPGRVLDHIHRGTLSLSDVRMVVLDEADEMLDMGFIDDIEAILRETPSDR 190 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 QT LFSAT P ++R+ R+M++PQ + + T P I Q + V K ++L R ++ Sbjct: 191 QTMLFSATFPNEVKRLALRYMRDPQHITVNRGEVTVPQIDQVCYKVLERNKLDSLCRIVD 250 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 +ED IIF RTK ++ EAL GY + L+GD++QA R++ + + + +++L+A Sbjct: 251 SEDIQLGIIFCRTKRGVDDLVEALLARGYLADGLHGDLSQAQRDRVMRKFRKNEIELLVA 310 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 TDVAARGLDV+ ++ V+NYD+P D ESYVHRIGRTGRAG+ G A+ V RE +LL+ IE Sbjct: 311 TDVAARGLDVDDVTHVINYDVPQDPESYVHRIGRTGRAGKRGLAITLVTPREYKLLKQIE 370 Query: 362 RTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDL 421 R +K I E+P+ E + +R+ E + +K+ + L YRA+LS + +E D Sbjct: 371 REIKQKITVREVPSLEDVAERQAEMWRSKIVDVIREGGLAPYRAILSGLV-----DEHDP 425 Query: 422 ETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERR 481 +A+ALLK+A G R +D GD RP Sbjct: 426 IDIASALLKLASSGD----------------------GNRTESDEYDFGDTGARP----- 458 Query: 482 DVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEV 541 M + + VGR + + V AI+ E + +G I +F + IE+ + V Sbjct: 459 ---GMVRFFVNVGRTSRMSPQDFVRAISEEAGVPGDAVGRIDMFEKFTFIEVEEESAPFV 515 Query: 542 LQHFTRTRILNKPMNMQLLGDAQPHT 567 + ++RI +N++ Sbjct: 516 YEALRQSRINGTRVNLEPAKPRSSRR 541 >UniRef50_B1VFV5 ATP-dependent RNA helicase n=35 Tax=cellular organisms RepID=B1VFV5_CORU7 Length = 778 Score = 721 bits (1861), Expect = 0.0, Method: Composition-based stats. Identities = 283/568 (49%), Positives = 381/568 (67%), Gaps = 10/568 (1%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F DLGL + +A+ +G+ KPSPIQ + IP L+ G DV+G+AQTG+GKTAAF+LP+L Sbjct: 133 FGDLGLSPEVFDAVRAVGFTKPSPIQEQTIPLLMAGEDVVGLAQTGTGKTAAFALPILSR 192 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 L+ + + PQ LVLAPTRELA+QVAE+ DF++ M GVN++ +YGGQ Y QL LR+G Sbjct: 193 LNLKSRKPQALVLAPTRELALQVAESFEDFAEKMGGVNILPIYGGQPYGAQLSGLRRGAH 252 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 +VVGTPGR++DHL++G+LD+S+L +VLDEADEML MGF EDVE I+ PE Q ALFS Sbjct: 253 VVVGTPGRVIDHLQKGSLDISELRFMVLDEADEMLNMGFQEDVERILEDTPEDKQVALFS 312 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 ATMP AIR +++R++ PQEV ++S+ T +I Q Y V K +AL R LE DFDA Sbjct: 313 ATMPSAIRHLSKRYLNSPQEVTVKSTQRTAENIEQDYLIVHHREKLDALTRILEVTDFDA 372 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 I+FVRTKN T E+AE L GY +AA+NGD+ QA RE+T+++LKDGRLDIL+ATDVAAR Sbjct: 373 MIMFVRTKNDTEELAERLRARGYEAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAAR 432 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 GLDVERI+ V NYDIP D+ESYVHRIGRTGRAGR+GRA+LFV RERR+L++IER K Sbjct: 433 GLDVERITHVFNYDIPRDTESYVHRIGRTGRAGRSGRAVLFVTPRERRMLKSIERATKSR 492 Query: 368 IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAA 427 + E+ELP+ + + + R KF ++ + LE + +R L++ AE + LE +AAA Sbjct: 493 LNEIELPSVDQVNEARKAKFNRELTKNLEDPQVSVFRDLVTTY---AEANGVTLEDIAAA 549 Query: 428 LLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDR-----PRRERRD 482 L AQG ++ KR DR G DR G E+R PR R+ Sbjct: 550 LAAGAQGGEKFLMEEAPRREHKRRSDDR--YGDADRRGGGAYRSFEERFNKPAPRFTDRN 607 Query: 483 VGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVL 542 +M++YR+ VG V IVGA+ANEG ++SR G I +F+ HS +ELP +P +V Sbjct: 608 GNEMEVYRLSVGHRQRVRPGAIVGALANEGGLNSRDFGRISIFSEHSLVELPADLPKQVF 667 Query: 543 QHFTRTRILNKPMNMQLLGDAQPHTGGE 570 + +TR+ + +N++ A G Sbjct: 668 EALDQTRVSGQLINIEPDPGAPKGRPGS 695 >UniRef50_C9RIQ5 DEAD/DEAH box helicase domain protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RIQ5_FIBSS Length = 802 Score = 719 bits (1856), Expect = 0.0, Method: Composition-based stats. Identities = 293/652 (44%), Positives = 400/652 (61%), Gaps = 32/652 (4%) Query: 3 EFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSL 62 E TF DLGL +LEA+ GYE PSPIQA+ IP LL G ++LG AQTG+GKTAAFSL Sbjct: 121 ESLVTFDDLGLSPEVLEAVKLAGYETPSPIQAKAIPALLQGANLLGTAQTGTGKTAAFSL 180 Query: 63 PLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 PLL ++ + +LVL PTRELA+QV++A+ ++ M+ V VV +YGGQ +QLRAL Sbjct: 181 PLLSRINFNGRETSMLVLTPTRELAIQVSDAIQQYAVKMQNVTVVPVYGGQDIAIQLRAL 240 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 ++ IVV TPGRL+DH+KRG++ L + +VLDEADEML MGF+EDVETI+ +IP Q Sbjct: 241 KRKASIVVATPGRLIDHIKRGSISLGAVKAIVLDEADEMLDMGFMEDVETILKEIPADAQ 300 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 ALFSATMP+++++I + + E +E RI+ TT +I Q Y V K EAL R LE Sbjct: 301 RALFSATMPDSVKKIIDQHLGEYEEARIEGKTTTVENICQRYLLVKNEHKIEALARVLEG 360 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 E+FD +IFVRTK T EVAE LE G+N A LNGD+ Q++RE+T+ RLK G+LDI++AT Sbjct: 361 EEFDGVLIFVRTKQNTTEVAEKLESRGFNVAPLNGDLAQSMRERTINRLKMGKLDIVVAT 420 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 DVAARG+DV+RISLVVNYDIP D+ESYVHRIGRTGRAGR+G A+LF+ RE+R+L+ IE+ Sbjct: 421 DVAARGIDVDRISLVVNYDIPYDTESYVHRIGRTGRAGRSGNAILFITPREKRMLKTIEK 480 Query: 363 TMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKI------------ 410 + I +E+P +E + K+R++ F AKV+ + +LDQ++ L+ + Sbjct: 481 ATRQPIDVMEMPTSEQISKKRVDAFKAKVKSVVSYGELDQFKELVRALAAEGCNMKDGVA 540 Query: 411 QPTAEGEELDLETLAAALLKMAQGERTLI---VPPDAPMRPKREFRD-RDDRGPRDRNDR 466 E+ E +AAA++KM Q ++ L P +AP + + R RD G D Sbjct: 541 LEDGSVNEMTAEDIAAAVIKMYQKKQPLFPNLPPLEAPKERREKVRTGRDFLGESRNEDF 600 Query: 467 GPRGDREDRPRRERRD-----VGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGN 521 G + + R R+ER++ Y + VGR D V R IVGAIA E +I+S IG Sbjct: 601 GLNSEEQKRMRKERKEGLNGVEEGFLRYYLGVGRIDHVTPRDIVGAIAGEANINSSNIGR 660 Query: 522 IKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGG------ERRGGG 575 IKLF ST+ELP +P +VL + I +++ D P R Sbjct: 661 IKLFDKFSTVELPNTLPQDVLDILSEMTIRGNDARFRVMTDEPPEGPAPGTRPHASREER 720 Query: 576 RGFGGERREGGRN---FSGERREGGRGDGRRFSGERREGRAPRRDDSTGRRR 624 R F +R+ G + G R+ R G RF + E R RR+ R+ Sbjct: 721 RSFHRDRKGGFHDDERRGGFRK--NREGGDRFGDKPFENRKARRERQFADRK 770 >UniRef50_C6VX00 DEAD/DEAH box helicase domain protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VX00_DYAFD Length = 590 Score = 717 bits (1851), Expect = 0.0, Method: Composition-based stats. Identities = 229/588 (38%), Positives = 335/588 (56%), Gaps = 28/588 (4%) Query: 2 AEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFS 61 E TF +LGL IL+AL ++G+EKPSPIQA+ IP +L G DV+G AQTG+GKTAAF Sbjct: 3 TETFQTFEELGLNENILKALQEMGFEKPSPIQAQGIPAVLQGSDVIGQAQTGTGKTAAFG 62 Query: 62 LPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 +P+L+ +D A Q L+L PTRELAVQV+E + SK MRGV + A+YGG D Q+R+ Sbjct: 63 IPVLERIDTSSNAVQALILCPTRELAVQVSEELGRLSKFMRGVRIEAIYGGDSIDRQIRS 122 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 L++G IVVGTPGR++DH++R TL ++ +VLDEADEML MGF ED+E+I+A +PE Sbjct: 123 LKKGVHIVVGTPGRVMDHMERRTLKFDEVRMMVLDEADEMLDMGFREDIESILADMPEDR 182 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 QT LFSATM + I IT+RF+ +P +++ + T +I Q Y+ V K E + R ++ Sbjct: 183 QTILFSATMSKPIMSITKRFLNDPTLIKVVRNELTNQNIEQVYFEVKPQAKVEVMTRLID 242 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 + ++F TK E+ E L+ GY S ++GD+ Q R + + K G IL+A Sbjct: 243 MHHIKSLLVFCNTKRKVDEIVEDLQLRGYASEGIHGDLRQQQRSNVMSKFKAGVTTILVA 302 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 TDVAARG+DV + V+NYDIPMD E YVHRIGRTGRAG +G+A V E+ L++IE Sbjct: 303 TDVAARGIDVSGLDGVINYDIPMDEEYYVHRIGRTGRAGMSGKAFSLVARDEKYRLKSIE 362 Query: 362 RTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQL-ESSDLDQYRALLSKIQPTAEGEELD 420 K+ I + +P+ E + R +F + + ES+D + Y +L + + E Sbjct: 363 SYTKVKIEKGVIPSFEDIVGVRKARFVENISNSIKESNDEELYNDVLEMLHHSGFSTEQI 422 Query: 421 LETLAAALLKMAQGERTL-----------------IVPPDAPMRPKREFRDRDDRGPRDR 463 + +A ++ + + E + R F DR + G R Sbjct: 423 VGAMAKQIMGVQKNEYSDSNLAWEERRSERREGGNDRFGRGERREGGRFGDRREGGSRFG 482 Query: 464 NDRG-----PRGDREDR-----PRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGD 513 +DRG PRG+R DR RR+ M + +GR D + + IVGAIA E + Sbjct: 483 SDRGGDRYAPRGERGDRGGDRGERRQSAPEAGMTRLFLSLGRKDHIMPKDIVGAIAGEAN 542 Query: 514 ISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLG 561 I + IG I ++ + +++P+ VL+ I KP+ + + Sbjct: 543 IPGKTIGAIDIYDKFTFVDVPERDARAVLRAMDGNTIKGKPVQIDIAK 590 >UniRef50_C5EJJ1 DEAD/DEAH box helicase domain-containing protein n=7 Tax=cellular organisms RepID=C5EJJ1_9FIRM Length = 572 Score = 712 bits (1840), Expect = 0.0, Method: Composition-based stats. Identities = 227/573 (39%), Positives = 331/573 (57%), Gaps = 19/573 (3%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 F +L L I+ A+ ++G+E+ SPIQA+ IP + GRD++G AQTG+GKTAAF +PLL Sbjct: 4 VKFDELQLDERIIRAITEMGFEEASPIQAQAIPVAMEGRDMIGQAQTGTGKTAAFGIPLL 63 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 Q +DP++K Q ++L PTRELA+QVAE M +K M G V+ +YGGQ Q+R+L+ G Sbjct: 64 QKVDPKVKKLQAIILLPTRELAIQVAEEMRRLAKFMHGTKVLPIYGGQDIVKQIRSLKDG 123 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 QIVVGTPGR++DH++R T+ + + +VLDEADEML MGF+ED+ETI++Q+PE QT + Sbjct: 124 TQIVVGTPGRVMDHMRRKTVKMDHVHTVVLDEADEMLNMGFLEDMETILSQLPEERQTLM 183 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSATMP+AI I R+F +P VR+ T P ++Q Y+ V K E + R L+ Sbjct: 184 FSATMPQAIADIARKFQDDPVTVRVIKKELTVPKVTQYYYEVKPKNKVEVMCRLLDMYAP 243 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 +I+F TK E+ +AL+ GY + L+GD+ Q R++ + ++GR DIL+ATDVA Sbjct: 244 KLSIVFCNTKRQVDELVQALQGRGYFAEGLHGDLKQVQRDRVMGSFRNGRTDILVATDVA 303 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARG+DV + V NYD+P D E YVHRIGRTGRAGR G+A V +E LR+I+R K Sbjct: 304 ARGIDVGDVEAVFNYDVPQDDEYYVHRIGRTGRAGREGKAFSLVVGKEVYKLRDIQRYCK 363 Query: 366 LTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLA 425 I +P+ + + ++EK +V L +DL + ++ K E+ LA Sbjct: 364 TKIIPQAIPSLNDITEIKVEKVLDQVMDILNDNDLTKMVNIIEKKLI---EEDYTSMDLA 420 Query: 426 AALLKMAQGERTLIVPPDAPMRPKREFRDRDD------------RGPRDRNDRGPRG--D 471 AALLKM G+ V P R D D RG RG RG D Sbjct: 421 AALLKMNMGDDNEDVIDCT--MPARSLDDLDSYGRGMGRGRGRERGSSSAYGRGRRGATD 478 Query: 472 REDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTI 531 R G M I +G+ V I+GA+A E I R +G+I ++ ++ + Sbjct: 479 RAAIDYVLGEGDGQMARLFINIGKAQRVTPGDILGAVAGESGIPGRMVGSIDMYDGYTFV 538 Query: 532 ELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQ 564 ++P EVL+ + +I + ++++ + Sbjct: 539 DVPGQYADEVLKAMSHAKIKGRNVHVEKANSNR 571 >UniRef50_B0TII3 Dead/deah box helicase n=18 Tax=Bacteria RepID=B0TII3_HELMI Length = 540 Score = 710 bits (1834), Expect = 0.0, Method: Composition-based stats. Identities = 222/562 (39%), Positives = 330/562 (58%), Gaps = 35/562 (6%) Query: 2 AEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFS 61 A+ + F ++ L + +A+ D+G+E+PSPIQA+ IP ++ G+D++G AQTG+GKTA F Sbjct: 14 AKDKVKFGEIELSPKVAKAIFDMGFEEPSPIQAKAIPVIMQGKDLIGQAQTGTGKTATFG 73 Query: 62 LPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 +P+ + L+P Q LVL PTRELA+QVA+ ++ + + + +YGGQ D Q+RA Sbjct: 74 IPMAETLNPRDGRVQALVLCPTRELAIQVAQEISKIGRQ-NDLKALPVYGGQSIDRQIRA 132 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 LR G Q+V+GTPGR+LDHL R TL L+ + +VLDEADEML MGF+ED+E I+ + PE Sbjct: 133 LRYGVQVVIGTPGRILDHLSRKTLRLNNVRMVVLDEADEMLDMGFVEDIEAILKETPEER 192 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 QT LFSATMP I+++ R++MKEP+ V I T P I Q Y+ +K +AL R L+ Sbjct: 193 QTLLFSATMPGPIQQLARQYMKEPEFVTISRDKLTVPLIEQVYYECKESQKVDALCRILD 252 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 E+ ++IIF RTK E+ ALE GY + L+GD+ QA R++ +++ +DG+ ++LIA Sbjct: 253 MEEIGSSIIFCRTKRGVDELVAALETRGYFAEGLHGDLTQAQRDRVMKKFRDGKAELLIA 312 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 TDVAARGLDVE ++ V+NYDIP D ESYVHRIGRTGRAGR G A+ + RE R L+ IE Sbjct: 313 TDVAARGLDVENVTHVINYDIPQDPESYVHRIGRTGRAGRKGIAITLINYREYRQLKLIE 372 Query: 362 RTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDL 421 R K I +LP+ + +R+ E K+ + L+ +Y++++S++ EE D Sbjct: 373 RVTKARIQRRDLPSMADIVERQKEAHKMKIVKLLDGGHFGEYKSIISEL-----AEEYDP 427 Query: 422 ETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERR 481 +AAA LK+ + E D P N G Sbjct: 428 MEIAAATLKL--------------LIEGPEAETEKDEAPEFGNTGAEPG----------- 462 Query: 482 DVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEV 541 M + +GR G+ + IV AIA E I IG I ++ + +E+P+ + G V Sbjct: 463 ----MVRLFMNIGRAQGIRPQDIVRAIAEEAGIPGNVIGVINIYDKFTFVEVPEDVAGRV 518 Query: 542 LQHFTRTRILNKPMNMQLLGDA 563 + + I + ++++ Sbjct: 519 MGVMHQNMIKGRKISVEPAKAR 540 >UniRef50_A4BET4 DEAD/DEAH box helicase-like protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BET4_9GAMM Length = 579 Score = 710 bits (1833), Expect = 0.0, Method: Composition-based stats. Identities = 275/585 (47%), Positives = 385/585 (65%), Gaps = 20/585 (3%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 M+E TFADLGL +L+ L+ LGYE P+PIQ++ I LL+G DVLG+AQTG+GKTAAF Sbjct: 1 MSE-SLTFADLGLAPVLLKTLDSLGYETPTPIQSQAIVQLLDGNDVLGLAQTGTGKTAAF 59 Query: 61 SLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 SLPLL +D PQ LVL PTRELA+QVAEA +++ + +V+ +YGG QLR Sbjct: 60 SLPLLSRIDTTKNKPQALVLCPTRELAIQVAEAFQTYARGVDNFHVLPIYGGADMRNQLR 119 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 AL+Q PQ++VGTPGR++DHL+RGTLDLS L LVLDEADEMLRMGFIED++ I+ P+ Sbjct: 120 ALKQNPQVIVGTPGRVMDHLRRGTLDLSDLKHLVLDEADEMLRMGFIEDIDWILEHTPKD 179 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 QTALFSATMP I+RIT ++ K+P ++ I++S + I Q W G+ K + L R L Sbjct: 180 KQTALFSATMPHQIKRITDQYQKDPVKIEIKASHSELQQIEQLVWRARGLDKLDGLTRIL 239 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 E ED++A IIFVRT+ ++E L GY + AL+G++ Q RE L +K G+LDI+I Sbjct: 240 EIEDWNAIIIFVRTRVECQFLSEKLAARGYAATALSGEVAQKQREDILSAMKKGKLDIII 299 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATDVAARG+D+ERI+ V+N+DIP D +Y HRIGRTGRAGR+G+A+LF + RE+R++R+I Sbjct: 300 ATDVAARGIDIERITHVINWDIPGDVSTYTHRIGRTGRAGRSGKAILFCKPREQRIIRDI 359 Query: 361 ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELD 420 ER K + + +P+AE LG+ R F + V + +E+ LD ++A+++ E Sbjct: 360 ERATKSELIDYPMPSAEKLGEHRAAAFKSTVVEHIEADKLDYFKAMITSWVDEG---EHS 416 Query: 421 LETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRER 480 L +AA++ MAQ ++ L +P D RP+R+ DR RG E R RR Sbjct: 417 LLDIAASMALMAQEDKPLQLPKDPEPRPRRDREDRPTRG-------------ESRNRRRD 463 Query: 481 RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGE 540 D + YR++VGR D E IVGAIANEG I ++I NI + + + ++LP GMP E Sbjct: 464 LDYAAI-TYRLDVGRRDRAEPGSIVGAIANEGGIEGKFINNIDIKENFTLVDLPDGMPTE 522 Query: 541 VLQHFTRTRILNKPMNMQLLGDAQPHTGGER--RGGGRGFGGERR 583 + + +TR+ +P+N+++ D P G +R R R GG+R+ Sbjct: 523 IFEQLKKTRVKGRPLNLRVWKDEAPKDGKDRGNRRPSRRDGGDRK 567 >UniRef50_C7HXF4 DEAD/DEAH box helicase domain protein n=3 Tax=Bacteria RepID=C7HXF4_THIIN Length = 666 Score = 708 bits (1829), Expect = 0.0, Method: Composition-based stats. Identities = 294/663 (44%), Positives = 398/663 (60%), Gaps = 67/663 (10%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 FA+LGL P+L+AL D+GYE PSPIQA IP LL GRDVLG AQTG+GKTAAF+LP+L Sbjct: 9 FAELGLPEPLLQALRDVGYETPSPIQAATIPPLLAGRDVLGQAQTGTGKTAAFALPILAK 68 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 +D + Q LVLAPTRELA+QVAEA ++ H+ G NV+ +YGGQ Y QL +L++G Sbjct: 69 IDCNARHTQALVLAPTRELAIQVAEAFARYATHLPGFNVLPIYGGQSYVPQLASLKRGAH 128 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 +VVGTPGR++DHL+RGTL L +L+ +VLDEADEMLRMGFI+DVE+I+ + P Q ALFS Sbjct: 129 VVVGTPGRIIDHLERGTLKLDQLAHMVLDEADEMLRMGFIDDVESILKKTPPQRQVALFS 188 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 ATMP AIRRI + ++++PQE+ I+++ TT I Q YW V G+ K +AL R LE E F+ Sbjct: 189 ATMPSAIRRIAQTYLRDPQEITIKAATTTATHIQQRYWMVSGLHKLDALTRILEVEPFEG 248 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 IIF RTK AT E+AE L G+ +AALNGD+ QALRE+ ++RLKDG+LDIL+ATDVAAR Sbjct: 249 MIIFARTKQATEELAEKLAARGFTAAALNGDVPQALRERMVQRLKDGQLDILVATDVAAR 308 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 GLDVERIS VVNYDIP D+ESYVHRIGRTGRAGR+G A+LFV RER LLR IER + Sbjct: 309 GLDVERISHVVNYDIPTDTESYVHRIGRTGRAGRSGDAILFVTPRERHLLRAIERATRQP 368 Query: 368 IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAA 427 I +++LP+ E + R+ +F ++ + E L+ Y+ L+ + + ++ +AAA Sbjct: 369 ITQMQLPSTEAVNDSRISRFMERITEAREQEGLEDYQRLVERYEQEF---DIPAIEIAAA 425 Query: 428 LLKMAQGERTLIVPPDAPMRPKREFRD--------------------RDDRGPRDRNDRG 467 L +M QG + L++ P + + R+ R R R+ Sbjct: 426 LARMVQGNKPLLMRPGSEPSYNADTREESRAPRREREPREGREPRTPRPARATREEGPAA 485 Query: 468 PRGDREDRPR------------RERRDVGD------------------------------ 485 +PR RE D Sbjct: 486 RAPRERAKPRDLDDFTQTLMQAREAADAAPHSAPREAASAEHPAHSERTARGPHTASDVR 545 Query: 486 MQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHF 545 + YR+EVGRD GVEVR++VGAIANE + +++IGNI + HS +ELP+GMP +V + Sbjct: 546 FETYRVEVGRDHGVEVRNLVGAIANEAGLENKHIGNIAIRGDHSFVELPEGMPKDVFRTL 605 Query: 546 TRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERREGGRGDGRRFS 605 +T + + + + R R G + + +RR G+ F Sbjct: 606 QKTWVSGRQLQLT--KAEPVRDTARERPATRAPARRFDSGDTSPAPKRRAAPMPGGKSFK 663 Query: 606 GER 608 + Sbjct: 664 RKP 666 >UniRef50_D2RJY3 DEAD/DEAH box helicase domain protein n=2 Tax=Firmicutes RepID=D2RJY3_ACIFE Length = 544 Score = 707 bits (1826), Expect = 0.0, Method: Composition-based stats. Identities = 225/559 (40%), Positives = 328/559 (58%), Gaps = 35/559 (6%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 T+F DL L IL AL ++G+E+PSPIQ IP L G D++G AQTG+GKTAAF +P++ Sbjct: 19 TSFEDLNLDRKILAALKEMGFEEPSPIQKGAIPMALEGEDLIGQAQTGTGKTAAFGIPII 78 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 Q ++ + + Q LV++PTREL +QVA+ ++ K + + V+ +YGGQ + Q+R+L++G Sbjct: 79 QKINEKDRHIQALVMSPTRELCIQVADEISKIGK-TKRIRVLPVYGGQPIERQIRSLKRG 137 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 Q+V+GTPGRLLDH++RGT+DL ++ LVLDEADEML MGF++D+E I+ +P QT L Sbjct: 138 IQVVIGTPGRLLDHIRRGTIDLEYVNFLVLDEADEMLDMGFVDDMENIIKNVPPERQTML 197 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSATMP I I++++M+ P+ V I V T P I Q Y+ K + L R L+ D Sbjct: 198 FSATMPRPILSISKKYMRAPKVVAIHKEVVTAPTIDQYYYET--RDKVDGLCRILDTTDD 255 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 IIF RTK E+ AL GY + L+GD++Q R++ +++ + G++DIL+ATDVA Sbjct: 256 CKMIIFCRTKKGVDELVIALATRGYEAEGLHGDLSQNQRDRVMKKFRSGQVDILVATDVA 315 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARGLD++ I+ VVN+D+P DSESYVHRIGRTGRAG G AL F+ RE R L+ IER++K Sbjct: 316 ARGLDIDNITHVVNFDVPSDSESYVHRIGRTGRAGNTGVALTFITPREFRQLKLIERSIK 375 Query: 366 LTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLA 425 I LP + +R+ E+ +K+Q LE Y ++ ++ + D++ +A Sbjct: 376 TKIIRGTLPTDASVLERQREQIVSKMQTILEQDRYQDYLPIVETLEK-----DYDVQDIA 430 Query: 426 AALLK-MAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVG 484 AA LK M +G + L P + P G Sbjct: 431 AAALKFMQEGAKALEEPAEEESLPDALANTGAKPG------------------------- 465 Query: 485 DMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQH 544 M + +GR V VR IV +IA E +I +R IG I ++ S +E+P +VL Sbjct: 466 -MVRLFVNIGRSSRVTVRDIVQSIAIEAEIPARSIGRISIYDKFSFVEVPMEHAEKVLAV 524 Query: 545 FTRTRILNKPMNMQLLGDA 563 R I +NM+ Sbjct: 525 MHRNTIRGCRVNMEPAKAR 543 >UniRef50_A4C3X3 RNA helicase DeaD n=3 Tax=Alteromonadales RepID=A4C3X3_9GAMM Length = 624 Score = 706 bits (1823), Expect = 0.0, Method: Composition-based stats. Identities = 294/623 (47%), Positives = 386/623 (61%), Gaps = 19/623 (3%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 + F L L AP+L+A+N++GY P+PIQ++ IP LL G+DVLG AQTG+GKTAAF LP Sbjct: 5 TQVRFDQLNLLAPVLQAINEMGYITPTPIQSQAIPSLLAGKDVLGEAQTGTGKTAAFGLP 64 Query: 64 LLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 LL LD +LK PQ+LV+ PTRELA+QVAEA+TDF+KH+RG+ V +YGGQ Y QLR L Sbjct: 65 LLSRLDADLKQPQMLVVCPTRELAIQVAEALTDFAKHIRGLFVATVYGGQSYTPQLRDLA 124 Query: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183 +GPQIVVGTPGR++DH+K+G L L L VLDEADEML MGF+ED+E I+ QIP+ Q Sbjct: 125 RGPQIVVGTPGRMMDHIKKGRLKLDNLKACVLDEADEMLNMGFLEDIEWILNQIPDQTQM 184 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAE 243 A FSATMP I++IT +F+ +P V+I + +P I+Q WTV + K L R E Sbjct: 185 AFFSATMPAPIKKITNQFLTDPIHVKIAVQKSDKPKITQKSWTVGRIGKTVGLERIAEVV 244 Query: 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 303 D+DA I+FVRT+N TL +AE L G+ ++ALNGDM Q RE+ +E+LK+GR++ILIATD Sbjct: 245 DYDAMIVFVRTRNDTLVLAEHLVSKGFKASALNGDMQQQDRERIVEQLKNGRINILIATD 304 Query: 304 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 363 V ARGLDV RI+ V+NYD+P DSESYVHRIGRTGRAGR G A+LF +RE R L +ER Sbjct: 305 VVARGLDVPRITHVINYDLPHDSESYVHRIGRTGRAGREGEAILFASHREVRSLSRLERI 364 Query: 364 MKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLET 423 + I ++P AE LG+ R+E+ A + + +E +DL ++A++S++ AE Sbjct: 365 TEGKIEVFDMPTAEQLGQARIERTQAALVKAMEVNDLANFQAIVSQM---AEQSNTTPLE 421 Query: 424 LAAALLKMAQGERTLIVPPDAPMRP-KREFRDRDDRGPRDRNDRGPRGDREDRP-----R 477 LAAALL +R + +P P +REF R DRG RDRNDR R DR +R Sbjct: 422 LAAALL----FDRQIALPFHPKADPVEREFAARSDRGGRDRNDRFDRNDRSERAPRERSE 477 Query: 478 RERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM 537 R RRD G+ YR VGR GV IVGA+ANE I S IG I+LF + ++LPK M Sbjct: 478 RPRRDNGEFDTYRFNVGRTHGVRPGDIVGAVANEIKIDSNDIGQIRLFDGFTHVDLPKNM 537 Query: 538 PGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFS------G 591 P + + I ++ L+ Q +R R F Sbjct: 538 PKPAFEKLQQVLIRKHKISPSLVTAEQAAAADSQREERAPRSDRNDRAPREFQPRRRNER 597 Query: 592 ERREGGRGDGRRFSGERREGRAP 614 G + R F P Sbjct: 598 NNDRGDKKPVRSFKASGEGRSRP 620 >UniRef50_D2QD85 DEAD/DEAH box helicase domain protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QD85_9SPHI Length = 643 Score = 699 bits (1806), Expect = 0.0, Method: Composition-based stats. Identities = 229/614 (37%), Positives = 344/614 (56%), Gaps = 65/614 (10%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F+ L + +L+A+ D+G+ PSPIQAE IP +L+GRDV+G AQTG+GKTAAF +P L Sbjct: 33 FSSLAISPELLQAVTDMGFISPSPIQAEAIPPILDGRDVIGQAQTGTGKTAAFGIPALDL 92 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 +D + ++ Q L+L PTRELA+QVAE + +K+ RG+ + A+YGG + Q+R+L+ G Sbjct: 93 IDVQDRSVQTLILCPTRELALQVAEEIKKLAKYKRGIRIEAIYGGDSIERQIRSLKSGVH 152 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 IV+GTPGR++DH++R TL L+ + ++LDEADEML MGF ED+E+I+ ++PE QT LFS Sbjct: 153 IVIGTPGRVMDHMERNTLKLNNVKMMILDEADEMLDMGFREDIESILEEMPEERQTILFS 212 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 ATM + I +IT++F K+P V++ T +I Q Y+ V K E + R ++ D Sbjct: 213 ATMSKPIMQITQKFQKDPVLVKVVKKELTNVNIEQVYFEVKSKAKVEVMCRLIDMYDLKL 272 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 ++F TK E+ E L+ GY + L+GD+ QA R + + + G +IL+ATDVAAR Sbjct: 273 LLVFCNTKRKVDEIVEDLQIRGYQAEGLHGDLRQAQRNNVMSKFRAGTTNILVATDVAAR 332 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 G+DV+ + V+N+DIP+D E YVHRIGRTGRAG++GRA FV E+ R I+ K+ Sbjct: 333 GIDVDDVDAVINFDIPLDEEYYVHRIGRTGRAGKSGRAFSFVGRDEKYRFREIQTYTKVK 392 Query: 368 IPEVELPNAELLGKRRLEKFAAKVQQQL-ESSDLDQYRALLSKIQPTAEGEELDLETLAA 426 + + +P+ E + R +F ++QQ + ES DL+ Y LL+++ E + A Sbjct: 393 VEKGVIPSFEDIVGVRKARFIEQLQQTIQESKDLNLYDDLLTQLNH----AGFSTEQIVA 448 Query: 427 ALLKMAQG-------ERTLIVPPD--------------------APMRPKREFRDRDDRG 459 AL+K + G ++ L + D R F DRD+RG Sbjct: 449 ALVKRSMGLEKNEFADQNLNLEDDRRNGRDKYADRGRGEGGGRFEDRRGGSRFGDRDERG 508 Query: 460 P-------RDRNDRGP------RGDREDRPRRERRD--------------------VGDM 486 R+ DRG R D DRPR RD +M Sbjct: 509 NSSRFGDRREGGDRGGSRFGDRRSDGGDRPRFNDRDRSGTGKPYFDRDDQRVPREREANM 568 Query: 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFT 546 + +GR D V IVGAIA E +I IG+I +F + +++PK + V+ Sbjct: 569 TRLMVSIGRKDFVRPGDIVGAIAGEANIPGNSIGSIDIFDKFTYVDVPKDVANRVVDAME 628 Query: 547 RTRILNKPMNMQLL 560 I + +N+++ Sbjct: 629 GNTIKGRRVNIEVA 642 >UniRef50_C0Q9A4 DeaD n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0Q9A4_DESAH Length = 616 Score = 699 bits (1805), Expect = 0.0, Method: Composition-based stats. Identities = 273/602 (45%), Positives = 385/602 (63%), Gaps = 46/602 (7%) Query: 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 E+ F+++GL P+L+AL+DLGYE P+ IQAE IP++L GRD+LG AQTG+GKTAAF+LPL Sbjct: 18 ESGFSEMGLIKPVLKALDDLGYETPTTIQAETIPYILAGRDLLGQAQTGTGKTAAFALPL 77 Query: 65 LQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 L +D +LK PQ+LVLAPTRELA+QVAE+ ++ ++G NV+ +YGGQ Y QL L++ Sbjct: 78 LSRIDIKLKKPQVLVLAPTRELAIQVAESFKGYAARIKGFNVLPVYGGQAYAGQLNQLKR 137 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 G ++VGTPGRL+D +KRG LDL+++ LV+DEADEMLRMGFI+DVE I+ Q P G Q A Sbjct: 138 GVHVIVGTPGRLMDLMKRGVLDLTQIMTLVIDEADEMLRMGFIDDVEWILEQTPPGRQVA 197 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 LFSATMP I++I +++ +P++V I+ T I Q +W V G K +AL R LEAE Sbjct: 198 LFSATMPAPIKKIAIKYLTDPKDVFIRLRTATADTIRQRFWMVKGTHKLDALTRILEAET 257 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 FDA I+FVRTK AT+E+AE LE GY + ALNGD+ Q RE+T++R K G++DIL+ATDV Sbjct: 258 FDAIIVFVRTKTATVELAEKLEARGYAAVALNGDIAQKARERTIDRFKKGKIDILVATDV 317 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 AARGLDVER+S V+NYDIP +ESYVHRIGRTGRAGRAG A+LFV RER +L+ IE+T Sbjct: 318 AARGLDVERVSHVINYDIPNGAESYVHRIGRTGRAGRAGDAILFVSPRERWMLKVIEKTT 377 Query: 365 KLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETL 424 + I ++LP+ E + +R+ F + L S +LD Y L+ + + + ++ + Sbjct: 378 RQQIEMMKLPSTEAINDKRIADFNQSITDTLASKELDLYLELMEQYR---QEHDVPALDI 434 Query: 425 AAALLKMAQGERTLIVPP--------DAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRP 476 AAAL M QGE+ L++ + P R + +F+D+ R D+ R D + + Sbjct: 435 AAALALMLQGEKPLLLSSPKKVSVVSEKPSRTEDKFKDKPLRKDEKSRDKAFRKDEKPKD 494 Query: 477 RRERRD-----------------------------------VGDMQLYRIEVGRDDGVEV 501 + R+D M+ +RIEVG G + Sbjct: 495 KPFRKDDEKSRDKPSPKAAKLADKPAGKKKASPKKAAALPPGKGMERFRIEVGDVHGAKP 554 Query: 502 RHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLG 561 + IVGAIANE ++ ++IG I + HS ++LP GMP + + + R+ + + + Sbjct: 555 KDIVGAIANEAELDGKFIGAITIEHDHSFVDLPIGMPATIFELLKKVRVAGQQLKISRST 614 Query: 562 DA 563 A Sbjct: 615 KA 616 >UniRef50_Q5ZT20 ATP-dependent RNA helicase n=4 Tax=Legionella pneumophila RepID=Q5ZT20_LEGPH Length = 589 Score = 699 bits (1804), Expect = 0.0, Method: Composition-based stats. Identities = 256/589 (43%), Positives = 369/589 (62%), Gaps = 26/589 (4%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 M + + F+ + +AL D+ + PSPIQA+ IP +L GRD + +AQTG+GKTAAF Sbjct: 1 MNQEISNFSTFNFSNALNKALEDMKFITPSPIQAQTIPLILQGRDAIALAQTGTGKTAAF 60 Query: 61 SLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 +LP+LQNL PE+ Q L+LAPTRELA+QVAE SK+ R V + L GGQ Y QL+ Sbjct: 61 ALPILQNLSPEISTTQALILAPTRELAIQVAEQFELLSKYQRNVTIAVLCGGQEYGRQLK 120 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 LR G Q+VVGTPGR+LDH+ +GTL L+ L +LDEADEMLRMGFIEDVETI+ ++PE Sbjct: 121 QLRSGAQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEKLPEK 180 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 Q ALFSATMP IR+I ++ +P + I+ T I Q + +K +AL+R L Sbjct: 181 KQMALFSATMPYRIRQIANTYLNDPASIEIRMETATVKSIEQRFLFASVHQKPDALIRVL 240 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 E ED+ I+FVRTK++T EVAE L+++G + A++GD+ Q+LRE+ + + K G +DIL+ Sbjct: 241 EVEDYQGVIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIAQFKQGAIDILV 300 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATDVAARGLDVER++ V+NYD+P D+E+YVHRIGRTGRAGR+G +LFV +E RL+ +I Sbjct: 301 ATDVAARGLDVERVTHVINYDMPHDNETYVHRIGRTGRAGRSGVTILFVTPKESRLISSI 360 Query: 361 ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELD 420 ER + I +V++PN ++ R ++F + + +L + Y+ ++ + + +D Sbjct: 361 ERHTRQRIEKVQVPNDHMIQMARQQRFMSNITTRLNHEHVYSYKRIVEEYIKEHDVSAVD 420 Query: 421 LETLAAALLKMAQGERTLIVPPDAPMRPKREF------------RDRDDRGPRDRNDRGP 468 + A LL R + P A K E R ++DR + +G Sbjct: 421 VAAALALLLHKDMPWRKELNMPKAASAFKEERARAGEKGLDLRGRFKEDRKSSFADRKGA 480 Query: 469 RGDREDRPR---RERRDVGDMQ-----------LYRIEVGRDDGVEVRHIVGAIANEGDI 514 RG ++D + ER+ D + L+RI+VG+ GV+ +IVGAIANE + Sbjct: 481 RGSKKDFAKDFSNERKKFNDGRKAVNQESVAQDLFRIDVGKIHGVKPGNIVGAIANEAGL 540 Query: 515 SSRYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDA 563 SRYI +K+ HST+ LPKGMP EV++ T+ + + +N+ L+G A Sbjct: 541 QSRYITGLKIHEDHSTVRLPKGMPKEVMKDLTKAWVCGRQLNLTLIGSA 589 >UniRef50_B8J1L5 DEAD/DEAH box helicase domain protein n=3 Tax=Bacteria RepID=B8J1L5_DESDA Length = 595 Score = 696 bits (1796), Expect = 0.0, Method: Composition-based stats. Identities = 247/604 (40%), Positives = 349/604 (57%), Gaps = 20/604 (3%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 +F +LGL +L+A+ D+G+E+PSPIQ +P LL G D G AQTG+GKTAAF LP Sbjct: 1 MTASFEELGLSRELLKAVEDMGFEEPSPIQVLAVPCLLAGNDAFGQAQTGTGKTAAFGLP 60 Query: 64 LLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 +L L PE + Q L+L PTRELA+QVAE + + H RGV ++ +YGGQ + QLRAL Sbjct: 61 ILDKLTPE-RNTQALILCPTRELAIQVAEELNKLAAHKRGVAILPIYGGQPIERQLRALA 119 Query: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183 +G Q+VVGTPGR++DHLKRGTL LS+ S VLDEADEML MGF ED+E I+ Q P Q Sbjct: 120 KGVQVVVGTPGRVMDHLKRGTLRLSQASMAVLDEADEMLDMGFREDIEAILEQTPASCQR 179 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAE 243 LFSAT+P AIR +++RF++EP+ + + + T P I Q Y+ V +K +AL R L++ Sbjct: 180 VLFSATVPPAIRELSKRFLREPEMLTVAQKMLTVPAIEQIYYEVRPHQKMDALCRLLDSR 239 Query: 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 303 F A++F TK EV L++ GY S +L+G++ Q+ R++ ++R + LD+L+ATD Sbjct: 240 AFHKALVFCSTKRGADEVTTHLQQRGYQSDSLHGNLAQSQRDRVMQRFRAEGLDVLVATD 299 Query: 304 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 363 VAARGLDV+ + V+NYDIP D E YVHRIGRTGRAGR G A FV RE +R+I R Sbjct: 300 VAARGLDVDDVDAVINYDIPHDVEKYVHRIGRTGRAGRVGSAFTFVTMREHYKMRDIIRC 359 Query: 364 MKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGE-ELDLE 422 + I E LP+ + R + +V+Q +ES L+++ L+ T + E+ Sbjct: 360 TRARITEGRLPSLRDVDNIRTSRLLDEVRQTVESGTLERWLTLVEDFLATQFPDGEITSR 419 Query: 423 TLAAALLKMA------QGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRP 476 ++AAL K+ ++ L P A + P+R+++DRD G R + G G R R Sbjct: 420 DVSAALFKLLMQRDFGDQDKPLDQDPLA-LEPRRQYKDRD--GAPGRREPGKPGARPQR- 475 Query: 477 RRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKG 536 R + G M + VG R +VGAI E ISSR+IG I + + +E+ + Sbjct: 476 ---RENDGPMTRLHLNVGHTHKATPRELVGAITGETGISSRHIGAISINKNFCVVEIAQE 532 Query: 537 MPGEVLQHFTR-TRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERRE 595 M +VL R I M++ R G RR+ + + R Sbjct: 533 MADDVLAVLNRGVFIAG----MRVAAKVDSGKPAYPRPRKPFAPGPRRQAPGKYGKKGRN 588 Query: 596 GGRG 599 G Sbjct: 589 GPEE 592 >UniRef50_D2LSA7 DEAD/DEAH box helicase domain protein n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LSA7_BACS4 Length = 528 Score = 690 bits (1782), Expect = 0.0, Method: Composition-based stats. Identities = 215/562 (38%), Positives = 324/562 (57%), Gaps = 40/562 (7%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F D + I +A+ D+G+E PSPIQ + IP +L G DV+G AQTG+GKTAAF +PLL+ Sbjct: 4 FEDFQISNDIKKAIKDMGFEAPSPIQEKVIPEILKGHDVIGQAQTGTGKTAAFGIPLLEK 63 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 + + + Q L+L PTRELA+QVA + SK R ++ +YGGQ Q++AL++G Q Sbjct: 64 VTSD-RQVQSLILTPTRELAIQVAGELQKLSKFKRS-QILPIYGGQSIGHQIKALKRGVQ 121 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 +VVGTPGR+LDHL R TL L + L+LDEADEML MGFIED+E I+ Q+ QT LFS Sbjct: 122 VVVGTPGRVLDHLNRKTLQLRSVHTLILDEADEMLDMGFIEDIEKILQQVNTNRQTMLFS 181 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 ATMP IR+++ ++M P++V I T P I+Q Y+ V K ++L R +++E D Sbjct: 182 ATMPPPIRKLSNKYMNNPKQVTISKGEVTAPSINQVYFKVLEKNKLDSLCRVIDSETIDL 241 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 IIF RTK E+ EAL+ GY + L+GD+ Q+ R+ +++ +D ++ LIATDVAAR Sbjct: 242 GIIFCRTKKGVAELTEALQARGYMADGLHGDLTQSQRDIVMKKFRDSSIEFLIATDVAAR 301 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 G+DVE +S V+NYDIP D ESYVHRIGRTGRAGR G A+ V RE + LR+IE +K+T Sbjct: 302 GIDVENVSHVINYDIPQDPESYVHRIGRTGRAGREGVAVTLVTPREMKHLRSIEAEIKMT 361 Query: 368 IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQ--YRALLSKIQPTAEGEELDLETLA 425 IP +P+ E + +++ + ++ +ES + D Y L+S + + + Sbjct: 362 IPSQRIPSVEEVVEKQQHVWKGQIIDLIESEEDDAGLYDDLVSDLLN-----QYPPNKIV 416 Query: 426 AALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGD 485 A+LLK+A F +D D D G G ++ Sbjct: 417 ASLLKLA-------------------FYSHEDLND-DGYDFGDTGAQKG----------- 445 Query: 486 MQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHF 545 M + I VGR+ + + + ++ I ++ +G I +F + + +E+P+ + V + Sbjct: 446 MTRFFINVGRNIELTPKKLAEEVSQLVGIPTKSVGRIDIFDNFTFMEVPQEVAPFVYEGL 505 Query: 546 TRTRILNKPMNMQLLGDAQPHT 567 +R+ +N++ Sbjct: 506 KYSRVNGARINLEPAKPRPKRN 527 >UniRef50_Q11039 Cold-shock DEAD box protein A homolog n=27 Tax=Bacteria RepID=DEAD_MYCTU Length = 563 Score = 690 bits (1781), Expect = 0.0, Method: Composition-based stats. Identities = 259/573 (45%), Positives = 361/573 (63%), Gaps = 27/573 (4%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 TFADL + +L A+ D+GYE P+ IQA IP L+ G DV+G+AQTG+GKTAAF++P+L Sbjct: 14 TFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLS 73 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 +D K PQ LVL PTRELA+QVAEA + ++ +NV+ +YGG Y VQL LR+G Sbjct: 74 KIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGA 133 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 Q+VVGTPGR++DHL+R TLDLS++ LVLDEADEML MGF +DVE I+++ PE Q ALF Sbjct: 134 QVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVALF 193 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SATMP AIR+++ +++ +P EV ++ +ISQSY V RK +AL R LE E F+ Sbjct: 194 SATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALTRVLEVEPFE 251 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 A I+FVRTK AT E+AE L G+++AA++GD+ QA RE+T+ L+DG +DIL+ATDVAA Sbjct: 252 AMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAA 311 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RGLDVERIS V+NYDIP D+ESYVHRIGRTGRAGR+G AL+FV RE LL+ IE+ + Sbjct: 312 RGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKATRQ 371 Query: 367 TIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAA 426 T+ E +LP E + +R+ KFA + L ++ +R L+ + + ++ + +AA Sbjct: 372 TLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYER---EHDVPMADIAA 428 Query: 427 ALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDM 486 AL +G ++ PD P+ + + RD R D+ Sbjct: 429 ALAVQCRGGEAFLMAPDPPLSRRNRDQRRDRPQRPKRRP-------------------DL 469 Query: 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFT 546 YR+ VG+ + IVGAIANEG + G I++ S +ELP +P L+ Sbjct: 470 TTYRVAVGKRHKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLA 529 Query: 547 RTRILNKPMNMQLLGDAQPHTGGERRGGGRGFG 579 +TRI ++++ +P R GG+ Sbjct: 530 QTRISGVLIDLR---PYRPPDAARRHNGGKPRR 559 >UniRef50_Q3AX69 DEAD/DEAH box helicase-like n=18 Tax=cellular organisms RepID=Q3AX69_SYNS9 Length = 624 Score = 689 bits (1780), Expect = 0.0, Method: Composition-based stats. Identities = 248/559 (44%), Positives = 345/559 (61%), Gaps = 6/559 (1%) Query: 2 AEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFS 61 +E ++ F G +L+ L D GY PSPIQ P L+ GRD++G AQTG+GKTAAF+ Sbjct: 67 SEPQSGFDGFGFSEALLKTLADKGYSDPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFA 126 Query: 62 LPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 LPLL+ L+ K PQ+LVLAPTRELA+QVA++ ++ + V+A+YGG + Q+ Sbjct: 127 LPLLERLESGQKTPQVLVLAPTRELAMQVADSFKAYAAGHPHLKVLAVYGGTDFRSQIST 186 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 LR+G +VVGTPGR++DH+++GTLD S L+ LVLDEADEMLRMGFI+DVE I+ Q+P+ Sbjct: 187 LRRGVDVVVGTPGRVMDHMRQGTLDTSGLTSLVLDEADEMLRMGFIDDVEWILEQLPKER 246 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 Q LFSATMP IRR+++R++ +P EV I++ I Q TV K EAL R L+ Sbjct: 247 QVVLFSATMPPEIRRLSKRYLNDPAEVTIKTKDQDGKLIRQRAITVPMSHKLEALQRVLD 306 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 A + IIF RTK TL VAE LE G+ A LNGD+ Q RE+T+ERL+ G +D+L+A Sbjct: 307 ACGGEGVIIFARTKVITLTVAETLEAAGHQVAVLNGDVPQNQRERTVERLRSGSVDVLVA 366 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 TDVAARGLDVERI LV+NYD+P DSE+YVHRIGRTGRAGR G A+LF+ RERR +RN+E Sbjct: 367 TDVAARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAVLFMTPRERRFIRNLE 426 Query: 362 RTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLE--SSDLDQYRALLSKIQPTAEGEEL 419 R I +E+P + + RL++ ++ + + + ++ + +Q A +L Sbjct: 427 RATGQPIEMMEVPGNTAINQGRLDRLRKRLSEAANGVAGNSEEGALIQELMQRVATELQL 486 Query: 420 DLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRE 479 E +A A L +A G L+ D + R R Sbjct: 487 TPEQIALAALNLAIGPNGLLRKGDDDWIQ----NTQRMDRDRGDRGDRGERRERRIDRPA 542 Query: 480 RRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPG 539 R DMQ YR+ VG D V+ ++VGAIA E + R IG I++F +HS ++LPKGMP Sbjct: 543 RAPEEDMQRYRVAVGHRDRVKPGNLVGAIAGETGLQGRSIGRIQIFDNHSLVDLPKGMPE 602 Query: 540 EVLQHFTRTRILNKPMNMQ 558 ++ R++N+ + + Sbjct: 603 DIFNSLRTLRVMNRELQIT 621 >UniRef50_A8SKI7 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SKI7_9FIRM Length = 580 Score = 689 bits (1780), Expect = 0.0, Method: Composition-based stats. Identities = 193/562 (34%), Positives = 314/562 (55%), Gaps = 15/562 (2%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 F D L +L+A+ ++G+E+PSPIQ + IP +LN D++G AQTG+GKTA+F +P+++ Sbjct: 4 NFNDFNLSKEVLKAVVEMGFEEPSPIQKQAIPTMLNNEDIIGQAQTGTGKTASFGIPIVE 63 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 ++ K Q +VL PTREL++QVAE ++ +K+ +GV VV +YGGQ + Q+R+L+ G Sbjct: 64 KVNKNSKTTQAMVLCPTRELSIQVAEEISKLAKY-KGVTVVPIYGGQPIERQIRSLKMGV 122 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 Q++VGTPGR++DH+KR TL + VLDEADEM MGF ED+E I+ +P QT F Sbjct: 123 QVIVGTPGRVIDHIKRKTLKTENIKTFVLDEADEMFDMGFREDIEKIIGFLPYERQTTFF 182 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SATM + R+ EP+ +++ T P ++Q Y+ + K E L R L+ ++ Sbjct: 183 SATMDHEMMDFAARYQSEPRLIKVVPKELTVPKVTQYYFALKHNMKLEILSRILDVQNPK 242 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 ++F TK ++ L+ GY + L+GD+ Q R+ + + ++ +DIL+ATDVAA Sbjct: 243 LTVVFCNTKKMVDDLTAGLQSRGYFADGLHGDLKQIQRDGVMNKFRNSTIDILVATDVAA 302 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RG+DV+ + LV+NYD+P D E YVHRIGRT RAGR G A+ FV RE L I++ K Sbjct: 303 RGIDVDDVDLVINYDMPQDVEYYVHRIGRTARAGREGTAISFVSPREMNTLSQIQKYTKT 362 Query: 367 TIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAA 426 I + ++P + L KR E+F +++++ ++ + L++ + E+ +AA Sbjct: 363 KIEKRDMPTLKDLIKRHEERFMEDIKEEINKNEHTKELNLINILM----SEDYSPIDIAA 418 Query: 427 ALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDM 486 LLK L + ++ + + + N G + + Sbjct: 419 CLLKHYNENNKLNNHEELIDVDIKKNKKKGNDKTSISNKGG----------KSNVTEKNS 468 Query: 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFT 546 I +G GV RHIV A+ N+ +IS+R IG+I++F S + + K + + + Sbjct: 469 GRIYINIGSRKGVSQRHIVSALCNDANISARDIGDIEIFEKFSFVNIHKNALKDAVNNLN 528 Query: 547 RTRILNKPMNMQLLGDAQPHTG 568 I + ++L + + Sbjct: 529 NAHIKGFKVLVELANKKEDSSK 550 >UniRef50_C5RIK3 DEAD/DEAH box helicase domain protein n=3 Tax=Clostridia RepID=C5RIK3_CLOCL Length = 536 Score = 689 bits (1779), Expect = 0.0, Method: Composition-based stats. Identities = 217/565 (38%), Positives = 337/565 (59%), Gaps = 30/565 (5%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 M + +T F +L LK IL+A+ND+G+E+PSPIQ+E IP + G D++G AQTG+GKTAAF Sbjct: 1 MTKIKT-FNELNLKDEILKAINDMGFEEPSPIQSESIPVGIEGYDLIGQAQTGTGKTAAF 59 Query: 61 SLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 +L N+ + + PQ L+LAPTRELA+QV E + +K+MR +N++ +YGGQ D QLR Sbjct: 60 GSIILNNMSEKRRVPQALILAPTRELAIQVNEELVRIAKNMR-LNILPIYGGQPIDRQLR 118 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 ALR G IVVGTPGR+LDHL+R +L+ + LVLDEADEML MGFI+D+E +M + E Sbjct: 119 ALRNGVDIVVGTPGRVLDHLRRKSLNTEFVKFLVLDEADEMLNMGFIDDIEEVMKSLNED 178 Query: 181 HQTALFSATMPEAIRRITRRFMK-EPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239 QT LFSATMP+AI+R+++R+MK + + + I+ + T I+Q Y+ + + E+L R Sbjct: 179 RQTLLFSATMPDAIKRLSKRYMKSDAKLISIEKNTVTASTITQYYYEIKNSDRFESLCRI 238 Query: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299 ++A++ +AAIIF +TK E+ +++R GY ++GDMNQ R TL++ K+ LD L Sbjct: 239 IDADEPEAAIIFCKTKKGVDELVSSMQRRGYVVEGMHGDMNQNQRMNTLKKFKESNLDFL 298 Query: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359 +ATDVAARG+DVE ++ V+NYD+P D+ESYVHRIGRTGRA + G+A V RE +L+ Sbjct: 299 VATDVAARGIDVENVTHVINYDLPQDAESYVHRIGRTGRANKEGKAYTLVTPREYIVLKQ 358 Query: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEL 419 IE+T K I +P + + + + KV+ +E+ DL ++ +++ ++ Sbjct: 359 IEKTTKSKIKRNSVPTVDEIYDVKYKNVLNKVRDTIENEDLSKFIPYATEL-----DDDY 413 Query: 420 DLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRE 479 L +AAAL+K+A + R+ RG R Sbjct: 414 SLVDVAAALMKIAFSNELAYEYTTNALEVPEPMRNSSARGASRGQKR------------- 460 Query: 480 RRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPG 539 + GR D V + +V + I R IG+I + + S + + + Sbjct: 461 ---------LFVSAGRRDNVSPKELVQFFKDSSRIQPRQIGDIAIMENFSFVNVDTSIVD 511 Query: 540 EVLQHFTRTRILNKPMNMQLLGDAQ 564 ++L+ + R+ + +N+++ + + Sbjct: 512 DILKFSSGKRLKGRKINIEVAKERR 536 >UniRef50_Q11UP8 ATP-dependent RNA helicase (Cold-shock DEAD-box protein A) n=2 Tax=Bacteria RepID=Q11UP8_CYTH3 Length = 580 Score = 687 bits (1775), Expect = 0.0, Method: Composition-based stats. Identities = 212/579 (36%), Positives = 322/579 (55%), Gaps = 23/579 (3%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F DLGL ++EA+ +GY + +PIQ + IP L+ G+D+ G AQTG+GKTAAF +P +++ Sbjct: 3 FKDLGLSPEVVEAIESIGYSEATPIQEKTIPILMTGKDLTGQAQTGTGKTAAFGIPAIEH 62 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 +D + Q L+L PTRELA+QV + SK +G+ V+A+YGG+ + Q+R L+ G Sbjct: 63 VDISINQTQSLILCPTRELALQVCTELKKLSKFKKGLRVLAVYGGESIERQIRDLKAGAH 122 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 IVVGTPGR++DHL R TL+ S LS ++LDEADEML MGF ED+E I+ ++PE QT LFS Sbjct: 123 IVVGTPGRIIDHLDRRTLNASHLSQIILDEADEMLNMGFREDIELILTRLPEERQTVLFS 182 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 AT+ I + +RF P+ ++I+ T + Q Y+ V +K E + + ++ + Sbjct: 183 ATLAPPILALAKRFQNNPEIIKIERKELTISTVEQFYYLVKNSQKTEIVTQIIDLNNLQL 242 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 +IF TK EV + L+ G+N +L+GD Q R + + + + G +IL+ATDVAAR Sbjct: 243 MLIFCNTKRKVEEVTDELKAYGHNPISLHGDKTQRDRTEVMSKFRKGLANILVATDVAAR 302 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 G+DV + V+NYD+P+D E+YVHRIGRTGRAG+ G++ V + E+ LR+IER K T Sbjct: 303 GIDVTGVDAVINYDVPLDIENYVHRIGRTGRAGQLGKSFTLVTSDEKYKLRDIERYTKAT 362 Query: 368 IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAA 427 I + E P + L + +K A ++ +LE ++ + LL + + + L + Sbjct: 363 IEKAETPTRQELVAYKKDKLATRITTELEKPNIKIWSDLLEEYKEKGITADQIAIALLSK 422 Query: 428 LLK-MAQGERTLI---------------------VPPDAPMRPKREFRDRDDRGPRDRND 465 +K +A+ ER + R DR P D Sbjct: 423 EMKDLAEPERRVFEDRGDRRDRGDRGDRGGRFDRGDRRDGPRRDGRSSDRFGDRPAASRD 482 Query: 466 RGPRGDREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLF 525 R G+R +R R R M + VGR D + IVGA A E +I IG I +F Sbjct: 483 RDG-GERRERTPRPRTSDASMARLFVNVGRIDRISPGDIVGAFAGEANIKGSQIGQIDIF 541 Query: 526 ASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQ 564 +S +ELP + +V+ +I K +N+++ Q Sbjct: 542 DKYSFVELPHDLVDQVMDGMRNNKIKGKSINIEISNGKQ 580 >UniRef50_C5CGQ2 DEAD/DEAH box helicase domain protein n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CGQ2_KOSOT Length = 524 Score = 685 bits (1768), Expect = 0.0, Method: Composition-based stats. Identities = 201/557 (36%), Positives = 312/557 (56%), Gaps = 36/557 (6%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 F+++GL +L ++ +G+ +P+PIQ++ IP +LNGRD++G A TG+GKTAAF +P Sbjct: 1 MSMNFSEMGLSRKMLNSIEKVGFVEPTPIQSKAIPVILNGRDIIGQAHTGTGKTAAFGIP 60 Query: 64 LLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 LL+ LD K Q L+L PTRELAVQVA + + + + + V+A+YGGQ + Q+ L+ Sbjct: 61 LLEMLDYSSKKVQALILCPTRELAVQVAREIAALASNRKEIEVLAIYGGQSIERQINTLK 120 Query: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183 +G Q+VVGTPGR++DH++R TL L +VLDEADEML MGF+ED+ I++ + + Q Sbjct: 121 KGIQVVVGTPGRIMDHMRRKTLKLDDTKFVVLDEADEMLNMGFLEDIRYILSHVGKERQI 180 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAE 243 +FSATMP+AI + + F KEP+ +++ + T + Q Y + RK +AL + +E Sbjct: 181 TMFSATMPKAIIALAQEFQKEPELIKVINRELTVSTVEQYYLEIGESRKFDALSKLIEYY 240 Query: 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 303 + +++F TK E+ L+ GY L+GDM+Q+LR + + ++ + +L+ATD Sbjct: 241 NPQLSLVFCNTKKKVDELVPMLQAKGYLVDGLHGDMSQSLRNRVMNSFRNKSIKVLVATD 300 Query: 304 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 363 VAARG+DV+ I V NYDIP D E YVHRIGRTGRAG+ G+A F R LR I+R Sbjct: 301 VAARGIDVDDIEAVFNYDIPQDEEYYVHRIGRTGRAGKTGKAFSFAYGRSLHRLREIQRY 360 Query: 364 MKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLET 423 K+ I + +P+ + + +R+E F ++ LE +L Y + ++ Sbjct: 361 TKIKIKSLNVPSEKDVNTKRMESFLGEINDILEQGNLSDYVPAVEELIARG----YTSME 416 Query: 424 LAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDV 483 +AAAL+KM +R +N+ G + + DR Sbjct: 417 IAAALIKMNVSKRAY-----------------------SQNEAGAKNNNRDR-------- 445 Query: 484 GDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQ 543 +M + G + VR IVGAI E I IG+I+L + HS +E+ + V+ Sbjct: 446 -EMIKLFVSAGSKHNIRVRDIVGAITGEAGIPGDRIGSIELLSKHSYVEVERRYAELVID 504 Query: 544 HFTRTRILNKPMNMQLL 560 R +I + +L Sbjct: 505 SLNRCKIKGNKIVAELA 521 >UniRef50_B0U160 DEAD-box subfamily ATP-dependent helicase n=18 Tax=Francisella RepID=B0U160_FRAP2 Length = 581 Score = 684 bits (1765), Expect = 0.0, Method: Composition-based stats. Identities = 256/581 (44%), Positives = 380/581 (65%), Gaps = 28/581 (4%) Query: 2 AEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFS 61 +E + F+ LGL I++ + LGYE P+PIQ IP++L+GRDVLG AQTG+GKTAAF+ Sbjct: 3 SETKKDFSQLGLNQDIIDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFA 62 Query: 62 LPLLQNLD--PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119 LPL+ N+D +APQ+LVLAPTRELA+QVAE F+K++ ++V +YGGQ Y Q+ Sbjct: 63 LPLINNMDLESRDRAPQVLVLAPTRELAIQVAEQFQAFAKNIPNLDVACIYGGQEYGSQI 122 Query: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179 RAL+QG ++VVGT GR++DH+++GTL L L LVLDEADEMLRMGFI+DV +++ + + Sbjct: 123 RALKQGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVRYVLSHVSD 182 Query: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239 Q LFSAT+P I I + +++ P ++++++ T ++Q + + G RK +AL R Sbjct: 183 ECQRLLFSATIPTDIADIIQEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRL 242 Query: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299 LE E+ D IIFV+TK +T+EVA+ L+ GY AA+NGDM Q+ RE +++ + + D+L Sbjct: 243 LEVEETDGVIIFVKTKTSTIEVADNLKALGYRVAAINGDMQQSQREYIVDQFRSAKSDVL 302 Query: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359 +ATDV ARG+D+ERIS V+NYD+P DS++YVHRIGRTGRAGR G ++ V +E R LR Sbjct: 303 VATDVVARGIDLERISHVINYDMPNDSDTYVHRIGRTGRAGREGISISLVPLKEMRFLRT 362 Query: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLE-SSDLDQYRALLSKIQPTAEGEE 418 +ER + EV +P+A+ L + R++ F ++ L+ + LD Y+ +++ I+ E Sbjct: 363 LERFTGSPMQEVFMPSAKDLAQSRIDHFKTRIASALDKNKSLDNYKEIITSIRDEL---E 419 Query: 419 LDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPR-------------DRND 465 LD + L A L +AQG+++ P + R R RDR+ RG DR+D Sbjct: 420 LDSDELLAVLTLLAQGKKSFF-PREIQARDDRPQRDRNLRGNSRDGGRNDRFERRGDRSD 478 Query: 466 RGPRGDREDR-------PRRERRDVG-DMQLYRIEVGRDDGVEVRHIVGAIANEGDISSR 517 R R DR D+ R+ RR V D+ Y++EVGRD+ V+ R+IVGAIANEG+I S+ Sbjct: 479 RNSRFDRSDKFDRSDRSDRKPRRAVNIDLTTYKLEVGRDNDVQPRNIVGAIANEGNIDSK 538 Query: 518 YIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQ 558 +I NI + H+ ++LP + +V+ H + K +N+ Sbjct: 539 HICNISIQKDHTLVDLPANLSPKVISHLRNVWVAGKKLNLT 579 >UniRef50_A6KZW9 ATP-dependent RNA helicase n=51 Tax=Bacteria RepID=A6KZW9_BACV8 Length = 624 Score = 683 bits (1764), Expect = 0.0, Method: Composition-based stats. Identities = 199/612 (32%), Positives = 332/612 (54%), Gaps = 23/612 (3%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLL-NGRDVLGMAQTGSGKTAAFSLPLL 65 TF +LG+ IL+A+ ++GYE P P+Q E IP+LL NG DV+ +AQTG+GKTAAF LPL+ Sbjct: 3 TFEELGVSPEILKAIKEMGYENPMPVQEEVIPYLLGNGNDVVALAQTGTGKTAAFGLPLI 62 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 Q +D + +APQ L+L PTREL +Q+A + D+SK++ G+ ++ +YGG + Q+R L+ G Sbjct: 63 QKVDVKHRAPQALILCPTRELCLQIAGDLNDYSKYIDGLKILPVYGGSSIESQIRMLKTG 122 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 I+V TPGRL+D ++R L ++ +V+DEADEML MGF + + I+ ++PE T + Sbjct: 123 VHIIVATPGRLIDLIERKVAKLETITDVVMDEADEMLNMGFTDSINAILEKVPEDRNTLM 182 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSATM I RI ++++ + +E+ I + +++ + V K AL R + Sbjct: 183 FSATMSPEISRIAKKYLHDAKEITIGTKNEGSKNVNHIAYLVHAKDKYAALKRIADYYPQ 242 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 IIF RT+ T E+A+ L ++GYN+ +L+G+++QA R+ +++ + L +L+ATDVA Sbjct: 243 IYGIIFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDLVMQKFRQRHLQLLVATDVA 302 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARGLDV ++ V+NY +P D ESY HR GRTGRAG+ G ++ + RE+ +R IER + Sbjct: 303 ARGLDVNDLTHVINYGLPDDIESYTHRSGRTGRAGKTGISIAIINLREKGKMREIERIIN 362 Query: 366 LTIPEVELPNAELLGKRRLEKFAAKVQQ-QLESSDLDQYRALLSKIQPTAEGEELDLETL 424 E+P+ + + +++L K +++ ++ +++ + + + E L E L Sbjct: 363 KKFIMGEMPSGKQICEQQLIKLIDDIEKVKVNDEEIESFLPGIYRKL-----EWLSKEDL 417 Query: 425 AAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVG 484 ++ M + R +RG ++R D G R + ER+ Sbjct: 418 IKRVVSMEFNRFLEYYSNAPEIEIPSTNDRRSERGSKERKDHG-----SAREKTERKAEK 472 Query: 485 DMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQH 544 + VG+ DG I+ I IG I L + S E+ + +V++ Sbjct: 473 GYTRLFLNVGKTDGFYANQIIELINRNMKKQRTTIGRIDLMQNFSFFEVAENQAQDVIKA 532 Query: 545 FTRTRIL-NKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERREGGRGDGRR 603 + + + + +++ GD G+ GERR + ++ R + + Sbjct: 533 LNKVNLNGGRKIVVEVAGD----------NNGKNDNGERRSSAARNASFGKKSDRSNKKT 582 Query: 604 FSGERREGRAPR 615 S E R RA R Sbjct: 583 TSKEGRPSRAER 594 >UniRef50_Q484Q1 RNA helicase DeaD n=1 Tax=Colwellia psychrerythraea 34H RepID=Q484Q1_COLP3 Length = 611 Score = 682 bits (1761), Expect = 0.0, Method: Composition-based stats. Identities = 269/600 (44%), Positives = 375/600 (62%), Gaps = 28/600 (4%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 FA LGL +L A+ +G+ + IQA IP LL G+DVLG AQTG+GKTAAF LP L Sbjct: 15 VAFASLGLPENLLSAVLSIGFTSATDIQALTIPPLLAGKDVLGEAQTGTGKTAAFGLPAL 74 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 +D +K PQ++VLAPTRELA+QVAEA+ F K M+G+ V LYGGQ Y Q + L +G Sbjct: 75 AKIDTSIKKPQLMVLAPTRELAMQVAEAIESFGKDMKGLRVATLYGGQSYGPQFQQLERG 134 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 Q+VVGTPGRL+DHL+R +L L +L VLDEADEML MGF+ED++ I+ IP+ Q L Sbjct: 135 AQVVVGTPGRLMDHLRRKSLKLDELRVCVLDEADEMLNMGFLEDIQWILDHIPKTAQMCL 194 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSATMP AIR+I RF+K+P+ +++ + + +I+Q W V G+ K AL R E ++ Sbjct: 195 FSATMPPAIRKIANRFLKDPEHIKVAAVKKAKANITQYAWKVSGITKMTALERIAEVVEY 254 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 DA IIFVRT+N T+++AE LER GY + ALNGD+NQA RE+ ++++K G+ IL+ATDV Sbjct: 255 DAMIIFVRTRNDTVDIAEKLERAGYPALALNGDLNQAQRERCIDQMKSGKSSILVATDVV 314 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARGLD+ RISLV+NYD+P D+E+YVHRIGRTGRAGR G ++ FV RE +R+ ER Sbjct: 315 ARGLDIPRISLVINYDLPGDNEAYVHRIGRTGRAGREGMSIAFVRPREMYSIRHYERLTN 374 Query: 366 LTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLA 425 T+ +LPN + +GK R+E+ +V + + D+ R ++ + A E+ + LA Sbjct: 375 GTVLNYDLPNIQDIGKIRIERTRVEVAKIVADKDISSMREIVEGM---AAESEVSMIDLA 431 Query: 426 AALLKMAQGERTLIVPPDA-PMRPKREFRDRDDRGPR------DRNDRG----------- 467 AALL Q ++ L D P R RE DR+DRG DRN RG Sbjct: 432 AALLFQKQMKQPLQPKEDPKPRRDARERTDRNDRGNDRNSRGNDRNSRGNDSRSAGRDSR 491 Query: 468 ---PRGDREDRPRRERRDVGDMQL--YRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNI 522 R +R+++PR+ + + D+ YR+EVG++ G IVGAIANE + S YIG I Sbjct: 492 GGENRSNRDEKPRKAKVNRSDVDWQTYRLEVGKEHGARPGDIVGAIANEISLDSSYIGAI 551 Query: 523 KLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGER 582 L HS ++LPKG+P ++ R+ +P+++ + ++R R R Sbjct: 552 NLHDKHSFVQLPKGIPTDLFNQLKGVRVRRQPLSIT--TSDEAVVSQQQRPARRTEKAPR 609 >UniRef50_Q8D2Y1 DeaD protein n=2 Tax=Enterobacteriaceae RepID=Q8D2Y1_WIGBR Length = 583 Score = 681 bits (1758), Expect = 0.0, Method: Composition-based stats. Identities = 314/595 (52%), Positives = 425/595 (71%), Gaps = 14/595 (2%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 M + E +F++LGLK IL ALNDLGY+KPSPIQ +CIP LL G DVLG+AQTGSGKTAAF Sbjct: 1 MNKKELSFSELGLKDFILLALNDLGYKKPSPIQEKCIPFLLKGYDVLGIAQTGSGKTAAF 60 Query: 61 SLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 LPLL N+D +LK PQI++L PTRELA+Q+ A SK+++ +N++ALYGGQ Y +Q++ Sbjct: 61 FLPLLNNIDLKLKLPQIIILTPTRELALQIKFACCSLSKYIKEINIIALYGGQNYSIQIK 120 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 +L++ PQIVVGTPGR+LD L + L+LS+++ VLDEADEMLRMGFIEDVE I + + Sbjct: 121 SLKRNPQIVVGTPGRILDLLNKKYLNLSEITSFVLDEADEMLRMGFIEDVENIFLKSSKQ 180 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 HQT LFSATMP AI RIT+RFMK+P+E+RI++S TRP+I Q+YW V+G+ K EAL+RFL Sbjct: 181 HQTILFSATMPAAIHRITKRFMKKPKEIRIKASENTRPNIKQNYWIVYGLCKIEALLRFL 240 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 E E FDA IIFVRTKNATLEV++ LE+NGYNS++LNGDMNQ LRE+TL R K G LDIL+ Sbjct: 241 EVEIFDAVIIFVRTKNATLEVSDVLEKNGYNSSSLNGDMNQILREKTLNRFKTGLLDILV 300 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATDVAARGLDV+RISLV+NYDIP+D ESY+HRIGRTGRAGR G+AL+FVENRER++L NI Sbjct: 301 ATDVAARGLDVDRISLVINYDIPLDVESYIHRIGRTGRAGRTGKALMFVENRERKILYNI 360 Query: 361 ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELD 420 ER +K + +++LP+ ELL K+RL F+ K++ Q+ S DL++Y+ LLSKI D Sbjct: 361 ERNIKEKLSQIKLPSVELLCKKRLNNFSEKIKNQINSLDLNKYQNLLSKIISFIGIS--D 418 Query: 421 LETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRER 480 ++ ++AALLK+AQ + LI+ PD + N + ++ + + Sbjct: 419 VKIISAALLKVAQKNKPLIISPDN-----------FFNKNKKINLLINKNNKRKKLNIIK 467 Query: 481 RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGE 540 + LY+ E+G+ DG+E +HIV + N G I S IG+IK+F ++STIE+ K +P Sbjct: 468 NKKKSISLYKAEIGKKDGIESKHIVRTMINLGKIKSNDIGSIKIFFNYSTIEIYKKIPLN 527 Query: 541 VLQHFTRTRILNKPMNMQLLG-DAQPHTGGERRGGGRGFGGERREGGRNFSGERR 594 +L +++ I K +N++LL + ++ G R + S R+ Sbjct: 528 LLSILSKSTIFKKSLNLKLLNHNKISKKPILKKIGSRLSNRISKNTSNKISYNRQ 582 >UniRef50_A0Z0M4 ATP-dependent RNA helicase n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z0M4_9GAMM Length = 582 Score = 680 bits (1756), Expect = 0.0, Method: Composition-based stats. Identities = 254/574 (44%), Positives = 360/574 (62%), Gaps = 30/574 (5%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F LGL + E L LGYE +PIQA IP LL GRDV+G+AQTG+GKTAAF+LP+L N Sbjct: 11 FNSLGLPDFLQENLQSLGYETATPIQAGTIPLLLEGRDVVGLAQTGTGKTAAFALPILAN 70 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 +D ++++PQ LVL PTRELA QVAEA + + M G+ +++++GG QL++LR+G Sbjct: 71 IDVKVRSPQALVLCPTRELAQQVAEAFRSYGRGMGGLRILSIFGGADMRQQLKSLREGTH 130 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 IVV TPGRLLDH++R ++DL+ ++ +VLDEADEMLRMGFI+DV+TI+A+ P+ + ALFS Sbjct: 131 IVVATPGRLLDHIERRSIDLTGINAVVLDEADEMLRMGFIDDVDTILAKTPKERKVALFS 190 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 ATMP+ +R I + + P E+ + ++ TT +I Q YW G K EAL R L ED + Sbjct: 191 ATMPKRVRDIANKHLSNPAEISVAAAATTNENIEQCYWLAKGASKLEALKRLLAFEDTEG 250 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 I+F RT+ +T +AE L + G ++ LNGDM+Q +R +T+ LK G LD+L+ATDVAAR Sbjct: 251 VIVFTRTRESTTVIAEQLRQTGLKASPLNGDMDQKMRLRTVSDLKSGALDVLVATDVAAR 310 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 GLDVERI+ V+NYD+P D E+YVHRIGRTGRAGR G+A+LFV RERR+LRNIER + + Sbjct: 311 GLDVERITHVINYDVPFDEEAYVHRIGRTGRAGRKGKAILFVVPRERRMLRNIERLTRQS 370 Query: 368 IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAA 427 IPE++LP+ + +R E FA ++ L + ++ + ++ D ++A A Sbjct: 371 IPEIKLPSVLAIDAKRREAFADSIRTALADPMQAELEEIIDTL-----NKDSDYRSIAVA 425 Query: 428 LLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDR--------------------- 466 L M P A + RD R + Sbjct: 426 LAGMLHSPGASKGPKHAKGEKHTPYGTRDARDEKSSKPNRKERRQGLQKKAATSESETPS 485 Query: 467 GPRGDR---EDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIK 523 P+ ++ E RP R+ DV M+ +R+EVGR GV+ ++GAIANE I +YIG I Sbjct: 486 APKNEKHLGEARPLRDHPDV-PMERFRVEVGRKHGVKPGELMGAIANEAGIEGQYIGMIN 544 Query: 524 LFASHSTIELPKGMPGEVLQHFTRTRILNKPMNM 557 + STI+LP+G+P +L+H +TR+ + M Sbjct: 545 ILEECSTIDLPEGIPKSILKHLKKTRVKGVHLAM 578 >UniRef50_C0W1P0 Superfamily II helicase n=2 Tax=Actinomyces RepID=C0W1P0_9ACTO Length = 616 Score = 680 bits (1755), Expect = 0.0, Method: Composition-based stats. Identities = 246/598 (41%), Positives = 355/598 (59%), Gaps = 14/598 (2%) Query: 3 EFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSL 62 E TTFADL L +L A+ ++G+E P+PIQ + IPHLL GRD++G+AQTG+GKTAAF L Sbjct: 2 ETMTTFADLNLPENVLSAITEMGFETPTPIQEQAIPHLLEGRDIVGIAQTGTGKTAAFGL 61 Query: 63 PLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 P+L ++DP A Q +VLAPTRELA+Q A A+ F+ HM V VV +YGG Y Q++ L Sbjct: 62 PMLAHIDPGFNAVQAIVLAPTRELAMQSATAIESFAAHMPKVKVVTVYGGASYTPQIKGL 121 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE--G 180 + G Q+VVGTPGR++D +++G L L+ +S LVLDEADEMLRMGF EDVETI A +PE Sbjct: 122 KSGAQVVVGTPGRVIDLIEKGALKLNNVSVLVLDEADEMLRMGFAEDVETIAASMPESGK 181 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 TALFSATMP+ I+R+ + + +P + + +T +I Q+Y V K AL R L Sbjct: 182 RITALFSATMPDFIQRVADQHLTDPVRIEVARQSSTVENIHQTYAVVPFKHKLGALGRVL 241 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 D DAAI+FVRT+ EVA + G+ +AA++GD++Q RE+ + RL+DG LD+L+ Sbjct: 242 ATRDEDAAIVFVRTRVDADEVAVDMATRGFTAAAISGDVSQNERERIVSRLRDGSLDVLV 301 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATDVAARGLDVERI LV+N+D+P ++E+YVHR+GRTGRAGRAGR+L F +E+ LR I Sbjct: 302 ATDVAARGLDVERIGLVINFDVPRETEAYVHRVGRTGRAGRAGRSLTFFTPKEQFRLRQI 361 Query: 361 ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELD 420 E+ + E+ +P+ + + R + + + ++E L+ Y LL +I+ T E E D Sbjct: 362 EKLTGTKMEEIVIPSPREVSEFRARRLVSLMPDRIELGRLELYYDLLHEIRHTTEIEVED 421 Query: 421 LETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGP-----RGDREDR 475 + A +G +R + E D + R R Sbjct: 422 IAAALLAHAIGDKGPSQEERRGAGKIRREEEIDDDGNFVAASFEAGRDGGKGGRAKGAKR 481 Query: 476 PRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPK 535 P R G + YR+EVG+ DGV+ IVGAI EG ++ +G I ++ + S +EL Sbjct: 482 PSAPRISSGFSRRYRVEVGKRDGVKPGAIVGAITGEGGVNGADLGRIDIYPTFSLVELSG 541 Query: 536 GMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGER 593 + + ++ + + + ++ +P G G G+RR R S +R Sbjct: 542 ELSEKAASKISKAFVSGRQLRIKEDTGPRPAAEG-------GDRGDRRGASRGRSADR 592 >UniRef50_A6M3F5 DEAD/DEAH box helicase domain protein n=5 Tax=Clostridium RepID=A6M3F5_CLOB8 Length = 525 Score = 675 bits (1743), Expect = 0.0, Method: Composition-based stats. Identities = 205/559 (36%), Positives = 326/559 (58%), Gaps = 42/559 (7%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 FA LGLK I++A++DLG+ KPS IQ + IP L+G D++G AQTG+GKTAA+SLP++ Sbjct: 6 FATLGLKESIVKAISDLGFTKPSQIQEQSIPVTLSGADLIGQAQTGTGKTAAYSLPIITK 65 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG-P 126 + + + + L+LAPTRELAVQV E + SK+ + + +A+YGG D Q+RALR+G Sbjct: 66 MS-DNRGIKSLILAPTRELAVQVNEEIQRLSKYEK-IVTLAVYGGDSIDRQIRALRKGDV 123 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 IVVGTPGR+LD +KR L L + LVLDEADEML MGFI+D++ I++ P QT LF Sbjct: 124 DIVVGTPGRILDLVKRKCLHLESIEFLVLDEADEMLNMGFIDDIQEILSHTPSERQTLLF 183 Query: 187 SATMPEAIRRITRRFMK-EPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 SATMP+ I ++ +++MK + + V I+ S T I QSY+ + + EAL R L+ ++ Sbjct: 184 SATMPDPIAKLAKKYMKPDAKLVSIKRSSLTVSKIEQSYFMINNKHRLEALCRLLDLDNP 243 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 +AIIF RTK E+ + L+ GY ++GDM QA R TL + K+G L++LIATDVA Sbjct: 244 SSAIIFCRTKRGVDELVQELQSKGYMVEGMHGDMTQAHRLTTLNKFKEGTLNLLIATDVA 303 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARG+DVE ++ V NYD+P D ESYVHRIGRTGRA ++G A V ++ +L+ I+ K Sbjct: 304 ARGIDVEGVTHVFNYDLPQDVESYVHRIGRTGRANKSGTAYSLVTPKDFSMLKQIQNVTK 363 Query: 366 LTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLA 425 +I + +P AE + ++ + ++V+ +++ DL ++ ++ E D ++ Sbjct: 364 SSITQKPVPTAEEINNKKFKDMMSEVESTIKAGDLTKFIPSAIEL-----TESYDAVSII 418 Query: 426 AALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGD 485 +AL+KM + ++ + P++E Sbjct: 419 SALMKMKFENEIVFDYS---------------------------SNKLEAPKKED----- 446 Query: 486 MQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHF 545 VG+ DG+ + ++ I + +++ IG I L + S + + + + ++L++ Sbjct: 447 -VRLFFSVGKRDGLTPKVLINYIKDMTKVNASAIGQIDLMENFSFVTVDESISSKILKNC 505 Query: 546 TRTRILNKPMNMQLLGDAQ 564 +I K +N+++ + Sbjct: 506 PGGKINKKKVNVEVANKRK 524 >UniRef50_Q2NEZ7 Predicted helicase n=20 Tax=cellular organisms RepID=Q2NEZ7_METST Length = 583 Score = 674 bits (1740), Expect = 0.0, Method: Composition-based stats. Identities = 214/618 (34%), Positives = 338/618 (54%), Gaps = 40/618 (6%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F DL + I +A+ D+G+E+ SPIQ+ IP +L +DV G AQTG+GKTAAF +PLL+N Sbjct: 6 FKDLNISPEIQKAVADMGFEEASPIQSLAIPQILAHKDVTGQAQTGTGKTAAFGIPLLEN 65 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 +D E Q ++L PTRELA+QVAE + S ++ ++V+ +YGGQ D Q++AL++G Q Sbjct: 66 IDSEDNNLQAIILCPTRELAIQVAEELRKLSVYLPKIDVLPVYGGQPIDRQIKALQKGVQ 125 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 I++GTPGR++DH+ RGTL L+ + ++LDEADEML MGF ED+E I+ IP Q LFS Sbjct: 126 IIIGTPGRVMDHIDRGTLSLNNIKTVILDEADEMLDMGFREDIEYILEDIPYERQFLLFS 185 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 AT+P+ I ++ +R+ P+ V++ T PD+ Q Y+ V K E L R L+ DFD Sbjct: 186 ATLPQEILQLAQRYQTNPEIVKVTKHELTTPDVEQKYFEVKEDMKLELLSRLLDLHDFDL 245 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 +++F TK ++ L+ GY + L+GD+ Q R++ + + K G ++IL+ATDVAAR Sbjct: 246 SLVFCNTKRKVDKLVSHLQIRGYLADGLHGDLTQNQRDRVMSKFKKGNIEILVATDVAAR 305 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 G+DV + V N+DIP D+E YVHRIGRTGRAG+ G+A FV RE LR+I+R K Sbjct: 306 GIDVGGVEAVFNFDIPNDNEYYVHRIGRTGRAGKTGKAYSFVSGREIYQLRDIQRYAKTK 365 Query: 368 IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAA 427 I + +P + + + + F ++++++ + D+ + ++ K+ E+ + +AA Sbjct: 366 IEQAPIPALSDVEEVKKDNFIEELKEKINTEDISKETYIIEKLVE----EDYNSIDIAAT 421 Query: 428 LLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDMQ 487 LLK D + EF D + Sbjct: 422 LLKGVI---------DDKRYKEEEFGDTEAH-------------------------EGFV 447 Query: 488 LYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTR 547 + + VGR + + I+ +I + ++ IGNI +F + S +E+PK + + Sbjct: 448 RFFMSVGRKQNITISVILNSIYEKTGLTGHQIGNIDIFDNFSFVEIPKANASDFYRFMGD 507 Query: 548 TRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERREGGRGDGRRFSGE 607 T I NK +++ R R F +R + F+ R + + D R Sbjct: 508 TYIENKRAHIEPARPRDKSKKNNTRNNNRNFNKKRGRKSKKFNPHRNDYHQKDSYRKDTY 567 Query: 608 RREGRAPRRDDSTGRRRF 625 R+E + R D+ G + Sbjct: 568 RKESKF--RKDNYGNESY 583 >UniRef50_Q6AMK6 Probable ATP-dependent RNA helicase n=1 Tax=Desulfotalea psychrophila RepID=Q6AMK6_DESPS Length = 632 Score = 674 bits (1739), Expect = 0.0, Method: Composition-based stats. Identities = 231/580 (39%), Positives = 334/580 (57%), Gaps = 33/580 (5%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F D LK+ ++ L LG+ +P+PIQ + IP LL G D++G AQTG+GKTAAF LPLL N Sbjct: 57 FTDFNLKSDLVANLVKLGFSQPTPIQEKAIPLLLAGSDLIGQAQTGTGKTAAFGLPLLNN 116 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 +D K Q LVLAPTRELA QV +A+ +S G NV+ +YGG Y Q+ LR+G + Sbjct: 117 IDFSKKCVQALVLAPTRELAQQVGDALATYSGD-DGRNVLVVYGGSSYQAQVGGLRRGAR 175 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 +VVGTPGRLLD +++G+L L +L LVLDEADEML MGFI+D+ETI++Q P+ QT LFS Sbjct: 176 VVVGTPGRLLDLIRQGSLKLDQLKTLVLDEADEMLSMGFIDDIETILSQTPKDRQTMLFS 235 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 AT+ + I R++ P+ + I I Q Y+ + K A+ R E E ++ Sbjct: 236 ATLSSRVMSIANRYLHSPESISISPKQMIGSSIEQRYYLINNSDKIAAITRVFEVETVES 295 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 A+IF RT+ E+A L G+ + L+GD++Q R + L R K G++ +L+ATDVAAR Sbjct: 296 ALIFARTRATVSELANELISRGFAAEGLSGDLSQEARTRVLSRFKKGQIKVLVATDVAAR 355 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 GLD++ IS V NYD+P D E YVHRIGRTGRAGR+G A+ V R+R + R IE+ Sbjct: 356 GLDIDDISHVFNYDLPEDPEVYVHRIGRTGRAGRSGTAISLVTLRDRWMHRRIEQYTGKK 415 Query: 368 IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAA 427 + + ELP E + + R +F ++ + R ++ + + +D +AAA Sbjct: 416 LIKGELPTVEQIEEHRNTQFLERLDVWIRRGRCRGEREIVEALVE----QGMDPLDVAAA 471 Query: 428 LLKMAQGER------TLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGD-REDRPRRER 480 LK+ + + + + R+ DR+DRG R DRG R D R RP+ R Sbjct: 472 ALKIVRKDETKRPIDPIKPVIEDAGGRNRKRGDRNDRGANGRGDRGGRSDSRGGRPQGRR 531 Query: 481 RDV---------------------GDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYI 519 D DM ++ G+ DGV V HIV ++++ ISSR + Sbjct: 532 DDRFAKGGDRGPKKKGDDVRQVSDKDMVPLTLDAGKKDGVAVNHIVASLSHFAGISSREL 591 Query: 520 GNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQL 559 G I++ +HS+I++PKG+ ++L H RI K +N+ Sbjct: 592 GKIRINETHSSIDVPKGLVDKMLSHNGSYRISKKAVNLTH 631 >UniRef50_C7MCD0 DNA/RNA helicase, superfamily II n=2 Tax=Actinomycetales RepID=C7MCD0_BRAFD Length = 669 Score = 672 bits (1735), Expect = 0.0, Method: Composition-based stats. Identities = 258/600 (43%), Positives = 357/600 (59%), Gaps = 15/600 (2%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +F D+ L AP+ A+++LG+ PS IQA+ IP LL GRDV+G+AQTG+GKTAAF LPLL Sbjct: 85 SFDDIALPAPLRRAVDELGFTTPSAIQAQAIPPLLEGRDVIGVAQTGTGKTAAFGLPLLA 144 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 +DP L+ Q LVLAPTRELA+QVA+A+ F+ + G++VVALYGG Y Q RAL +G Sbjct: 145 AIDPSLREVQALVLAPTRELAMQVADAIASFATSIGGLDVVALYGGSPYGPQERALARGA 204 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 Q+VVGTPGR++DH++R L L + VLDEADEMLRMGF EDVE I++ P+ Q ALF Sbjct: 205 QVVVGTPGRVMDHMRRTNLRLDTIRVAVLDEADEMLRMGFAEDVEEILSHSPDTRQVALF 264 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SATMP AI+R+ + M++P V + +T + Q+Y V + AL R L D + Sbjct: 265 SATMPAAIQRVAQTHMQDPVRVSVSPQSSTVKSVHQTYAVVPFRHRTGALARVLATSDAE 324 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 AAI+FVRT+ A EV AL G +A+++GD+ Q RE+ +ERL+DG L +L+ATDVAA Sbjct: 325 AAIVFVRTRAAAEEVGTALVGRGLIAASISGDVPQKEREKIVERLRDGSLQVLVATDVAA 384 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RGLDVERI LVVN+D+P ++ESYVHRIGRTGRAGR+G AL F+ ERR L+NIER K Sbjct: 385 RGLDVERIGLVVNFDVPKEAESYVHRIGRTGRAGRSGEALTFIGPHERRALKNIERATKQ 444 Query: 367 TIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAA 426 T+ E +P+ + K RL +V ++E L+ YR L+ + ++D LAA Sbjct: 445 TLAEAVIPSPRDVSKHRLAAQLTQVPARVERGRLELYRELIGQFVA---EHDIDPLELAA 501 Query: 427 ALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDM 486 AL M+ G+ P + + G + DR PRGDR+ PR Sbjct: 502 ALGAMSVGDEG----------PGTATEEEEFTGAKLGEDRSPRGDRDRGPREAAATERGY 551 Query: 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFT 546 Y++ VG G IVGAI EG + + IG I++F + +++ + E ++ + Sbjct: 552 TSYKVGVGHTHGARPPGIVGAITGEGGLHGKDIGKIQIFPHFALVQIRGSLSPEQMERIS 611 Query: 547 RTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERREGGRGDGRRFSG 606 R ++ + + + D P G R R+ G R + R RR G Sbjct: 612 RAKVGGRELRI--GPDHGPRGGKGPRRDNDRPFRRDDRSRRDDRGGRFDSARRGPRRSEG 669 >UniRef50_A9ENG9 ATP-independent RNA helicase n=18 Tax=Bacteria RepID=A9ENG9_SORC5 Length = 624 Score = 671 bits (1733), Expect = 0.0, Method: Composition-based stats. Identities = 249/575 (43%), Positives = 345/575 (60%), Gaps = 23/575 (4%) Query: 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 +FA LG+ +L L +LGYE+P+PIQ E IPHLL GRD+LG A TG+GKTAAF+LPL Sbjct: 7 SASFAALGIAPALLGVLAELGYEEPTPIQREAIPHLLTGRDLLGQAATGTGKTAAFALPL 66 Query: 65 LQNLDPELKAPQ---ILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 LQ L+ + P+ LVL PTRELA+QVAEAM + + + GV V+++YGGQ + QLRA Sbjct: 67 LQRLEIGGEPPRLPEALVLVPTRELAMQVAEAMHRYGRRL-GVQVLSVYGGQPFGQQLRA 125 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 LR+G +VV TPGR LDH+ RGTL L + +VLDEADEML MGF E +E I++ P Sbjct: 126 LRRGVHVVVATPGRTLDHIGRGTLALDGIRTVVLDEADEMLDMGFAEALEEILSATPGAR 185 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTR---PDISQSYWTVWGMRKNEALVR 238 QT LFSAT+P I I R ++EP V+I P + Q+ + V K+ AL R Sbjct: 186 QTVLFSATLPPRIAAIAGRHLREPVRVKIAGEKAAPGELPRVRQTAYIVPRAHKSAALTR 245 Query: 239 FLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDI 298 L+ ED +AI+F RT+N E+ EAL GY + AL+G +Q R++ + R + G ++ Sbjct: 246 VLDMEDPSSAILFCRTRNEVDELTEALRARGYEAQALHGGFSQEHRDRVMARFRAGTAEL 305 Query: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLR 358 L+ATDVAARGLD+E +S V+NYD+P E YVHRIGRTGRAGR G A+ VE RE L+R Sbjct: 306 LVATDVAARGLDIEHVSHVINYDVPCAPEVYVHRIGRTGRAGREGAAITLVEPREHYLIR 365 Query: 359 NIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEE 418 N+ER I LP L RRLE A +++ L +++R ++ + +E Sbjct: 366 NVERLTGQRIEAATLPTVADLRARRLELTRASLREALIEGGAERFRVVVEGL-----ADE 420 Query: 419 LDLETLAAALLKMA----QGERTLIVPPDAPMR--PKREFRDRDDRGPR-DRNDRGPRGD 471 D+ +AAA +K+A +G+R R P+ R RDDR PR RG G+ Sbjct: 421 FDVMDIAAAAVKLAHDATEGDREEEEAEIPSFRPPPRGPERARDDRAPRGPAGARGRPGE 480 Query: 472 REDRPRRERRDV----GDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFAS 527 + RPRRE R+ G++ + GR+ G+ +VGAIANE +SSR IG I++ Sbjct: 481 AQARPRRETREARETDGNVARLYVSAGRNAGIRPADLVGAIANEASLSSRDIGAIEIADG 540 Query: 528 HSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGD 562 ST+E+P V++ TR+ + + ++ Sbjct: 541 FSTVEVPADAADAVIEALRATRLKGRKVQVRRDDA 575 >UniRef50_A8REA9 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8REA9_9FIRM Length = 572 Score = 670 bits (1730), Expect = 0.0, Method: Composition-based stats. Identities = 205/601 (34%), Positives = 325/601 (54%), Gaps = 38/601 (6%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 TTF +L + IL A++++GYE+ + IQA+ IP+++ G+DVLG + TG+GKTAAF +P + Sbjct: 2 TTFNELHISEAILRAVSEMGYEQATEIQAKAIPYIMEGKDVLGRSNTGTGKTAAFGIPAI 61 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 + + P+ K L++ PTREL QVA + FSK+ GV +V +YGGQ + Q++ L++G Sbjct: 62 EMVQPQDKYANALIICPTRELVTQVAMELRKFSKYKEGVKIVPIYGGQPIERQIQLLKRG 121 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH--QT 183 IVVGTPGR++DHL+R TL LS + ++LDEADEML MGF ED+E I++ +P QT Sbjct: 122 CGIVVGTPGRIMDHLRRRTLKLSDIRMVILDEADEMLNMGFKEDIEEILSLMPSERSYQT 181 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAE 243 LFSAT P I RI + F +P V I+S+ T + Q Y+ V +K AL L Sbjct: 182 ILFSATWPSEIMRIAKEFQNDPVTVEIKSAQRTIDTVEQLYYEVPRGKKANALRVLLNHY 241 Query: 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 303 D + +IF TK E+ L ++ + AL+GDM Q R + +E+ + G + ILIATD Sbjct: 242 DPELCMIFANTKKMVDELQGELNKHDIKACALHGDMKQEFRSRVMEQFRSGSMPILIATD 301 Query: 304 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVE-NRERRLLRNIER 362 VAARG+DV+ + LV+N+DIP D+E Y+HRIGRTGRAG+ G A+ + R+R L+NI R Sbjct: 302 VAARGIDVDDVDLVINFDIPQDNEYYIHRIGRTGRAGKKGLAITLISGGRQRSELKNIMR 361 Query: 363 TMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLE 422 K I LP + + + + V+ + D+ + +++ E + +E Sbjct: 362 YTKTNIKHHALPTSAQMQAHNRKAYIEGVKLACDEGVTDESMEIANELL----AEGIAVE 417 Query: 423 TLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRD 482 + +AL+ M + + + +R D Sbjct: 418 NIISALISMTYKNEIIDIEEEE------------------------------HVKRYAAD 447 Query: 483 VGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVL 542 + + +G+ DGV+ +IV AI+ E ISS+ IG I + ++ S +++ VL Sbjct: 448 F-EAVTLKFSIGKQDGVKTGNIVAAISEECGISSKAIGRIDVRSNFSLVDVDAAKVDLVL 506 Query: 543 QHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERREGGRGDGR 602 + R I + +++++ + G+ + E+ R+ +R GR R Sbjct: 507 SNMQRAHIRGREVSVEIDHAPKRKNAGKEKNTRNKMKNEKNRKRRDERKKRNTTGREGKR 566 Query: 603 R 603 + Sbjct: 567 K 567 >UniRef50_C0EAN9 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EAN9_9CLOT Length = 563 Score = 668 bits (1725), Expect = 0.0, Method: Composition-based stats. Identities = 219/587 (37%), Positives = 319/587 (54%), Gaps = 35/587 (5%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 FA L L +A+ +G++ + IQA+ IP + G DV+G +QTG+GKT AF +P ++ Sbjct: 6 FAQLNLSDETGQAIEAMGFDNATDIQAQSIPLIRAGYDVIGRSQTGTGKTVAFGVPAVEL 65 Query: 68 LDPE--LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 +D E Q+L+L PTRELAVQ + +K+ RGV V +YGG D Q+ L++G Sbjct: 66 IDTEELRNKTQVLILCPTRELAVQACSEIEKIAKYKRGVRAVDIYGGAPMDRQIMRLKRG 125 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 IVVGTPGR++DHL+R TL L L ++LDEADEML MGF EDVETI+ Q P+ QT L Sbjct: 126 ANIVVGTPGRVMDHLRRRTLKLDHLKMIILDEADEMLNMGFREDVETILKQTPDERQTIL 185 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSATMP AI +T+++ K+PQ + I T +I Q ++ V RK +AL L+ D Sbjct: 186 FSATMPPAILALTKQYQKDPQLIEINRKQVTLDNIEQQFYEVPMGRKMDALGIILQYHDP 245 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 +IIF TK EV L+R+GY++ L+GDM Q+ R + ++ K GR IL+ATDVA Sbjct: 246 ALSIIFCNTKRMVDEVTAFLDRSGYSAEGLHGDMKQSQRTKVMDSFKRGRTKILVATDVA 305 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVE-NRERRLLRNIERTM 364 ARG+DV + V+NYD+P + E YVHRIGRTGRAG+ G+A+ R+ L +I R Sbjct: 306 ARGIDVNNVDYVINYDVPQNQEYYVHRIGRTGRAGKEGKAVTICSGRRQVDELYHIVRMT 365 Query: 365 KLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETL 424 K TI LP+ + + +R E A+++Q+L +++ Y+ + ++ + T+ Sbjct: 366 KSTIKRESLPSGQDIERRSNEGVVARMEQKLAAAEELYYKEVAEELVQKG----YNPTTI 421 Query: 425 AAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVG 484 AA L+MA G P RPK + GPR G Sbjct: 422 AAVALEMAFGRPKTDFPEIKQFRPKAGLQ-------------GPR--------------G 454 Query: 485 DMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQH 544 + I +GR++ + HIVGAI D+S R IG I+++ + + +P ++ Sbjct: 455 SFRKIEINIGRENHIAPNHIVGAITERSDLSGRDIGKIEIYDDKTIVAIPDSQIESTVKA 514 Query: 545 FTRTRILNKP-MNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFS 590 +I KP + + L G R GG RG+ R Sbjct: 515 MDGCKICGKPTVTVALKGGDTAKRPDYRPGGNRGYRPRNNRKPRTSR 561 >UniRef50_Q725W5 ATP-dependent RNA helicase, DEAD/DEAH family n=3 Tax=Desulfovibrio vulgaris RepID=Q725W5_DESVH Length = 532 Score = 667 bits (1721), Expect = 0.0, Method: Composition-based stats. Identities = 229/571 (40%), Positives = 327/571 (57%), Gaps = 40/571 (7%) Query: 3 EFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSL 62 E +F DL L+ +L+A+ +LG+ +PSPIQ+ IP LL GRDV+G AQTG+GKTAAF L Sbjct: 2 ESVESFKDLPLEEELLKAIEELGFTEPSPIQSIAIPRLLEGRDVIGQAQTGTGKTAAFGL 61 Query: 63 PLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 PLLQ +D ++ Q LVL PTRELA+QVA +T +KH+RGV ++++YGGQ + Q AL Sbjct: 62 PLLQRIDAADRSVQALVLCPTRELALQVANGLTALAKHLRGVRILSVYGGQPIEPQASAL 121 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 R+G Q+VVGTPGR+LDH+ RGTL L + VLDEADEML MGF ED+E I++++PE Q Sbjct: 122 RRGAQVVVGTPGRILDHINRGTLQLGVVRMTVLDEADEMLDMGFREDIERILSEMPEWVQ 181 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 +A FSATMP+ I + RRF++EP+ +R+ T + Q+++ V R+ +A+ R +A Sbjct: 182 SAFFSATMPDGILELARRFLREPELLRVTRRQLTVANTEQAWFEVRPFRRVDAVCRIFDA 241 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 AI+F TK E+A AL++ G + AL+GD+NQ RE+ + R + G + +L+AT Sbjct: 242 YIPRKAIVFRATKQGVDELAAALQQRGILADALHGDLNQTQRERVMSRFRAGGISVLVAT 301 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 DVAARGLDV+ + V+N+D+P D E+YVHRIGRTGRAGR GRA F R+ LR+I+R Sbjct: 302 DVAARGLDVDDVDTVINFDLPNDPETYVHRIGRTGRAGRTGRAFSFAAGRDVYKLRDIQR 361 Query: 363 TMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLE 422 I +P A + R + +V L S++ ++ K+ E D Sbjct: 362 VTGSRIDRRAMPTAADASRARTGQLLEEVAAGLASAETSACLPVVEKLI----AEGADPT 417 Query: 423 TLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRD 482 LAA LL+M + +P G R +D G Sbjct: 418 QLAATLLRMIMQRDRIDLP-----------------GARQTDDIG--------------- 445 Query: 483 VGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVL 542 VGR + R +VGAIA E IS R IG+I++ S +E+ + EV+ Sbjct: 446 -TGRVRLFFNVGRRMRITPRDLVGAIAGETGISGRSIGSIEIHDRFSFVEVDASIAPEVV 504 Query: 543 QHFTRTRILNKPMNMQLLGDAQPHTGGERRG 573 +I + ++ A P G +R Sbjct: 505 SVMHGNQIRGFRLAVE---QASPREGQDRAA 532 >UniRef50_C1IBN1 DEAD-box ATP dependent DNA helicase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1IBN1_9CLOT Length = 526 Score = 666 bits (1719), Expect = 0.0, Method: Composition-based stats. Identities = 204/568 (35%), Positives = 321/568 (56%), Gaps = 43/568 (7%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 M E + F++LGLK +L+++NDLG+EKPS IQAE IP + G D++G AQTG+GKTAAF Sbjct: 1 MNEIK--FSNLGLKDTLLKSINDLGFEKPSQIQAEAIPVAIQGYDLIGQAQTGTGKTAAF 58 Query: 61 SLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 ++ ++ + ++LAPTRELA+QV + + SK+ + ++ +YGG Q+R Sbjct: 59 GCGIINHISKKS-GLSAIILAPTRELAIQVNDELKRLSKY-DDLTILPVYGGDPITNQIR 116 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 AL++ IVVGTPGR+LDH+KRGT+ L ++ LVLDEADEML MGFI+D+E I+ Q+P Sbjct: 117 ALKRNVNIVVGTPGRVLDHIKRGTIKLDQIKFLVLDEADEMLNMGFIDDLEDIIKQLPSE 176 Query: 181 HQTALFSATMPEAIRRITRRFMK-EPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239 QT LFSATMP+ IR++ +R+MK + + + I+ + T ISQ+++ V + EAL R Sbjct: 177 RQTLLFSATMPDQIRKLAKRYMKPDAKHISIKKTSMTVSTISQNFFEVSHKTRFEALCRV 236 Query: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299 L+ + +AIIF RTK E+ E ++ GY ++GDM+QA R +TL++ K+G L+ L Sbjct: 237 LDFDTPSSAIIFCRTKKGVDELVEGMQSRGYVVEGMHGDMSQAHRLRTLKKFKEGSLNYL 296 Query: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359 +ATDVAARG+DVE I+ V+NYD+P D ESYVHRIGRTGRA R G A V +E +L+ Sbjct: 297 VATDVAARGIDVEGITHVINYDLPQDVESYVHRIGRTGRANREGIAYSLVSPKEYSMLKQ 356 Query: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEL 419 I+ K I +P + + + V + SD ++ + +++ + Sbjct: 357 IKSVTKSDISRKNIPTVNDIFNSKSKSILEDVTNTINDSDYSKFIPVATELTQ-----KY 411 Query: 420 DLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRE 479 D + AAL+K + L + E Sbjct: 412 DSVEIIAALIKNKFNDDLLETYTSDVL--------------------------------E 439 Query: 480 RRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPG 539 D++L+ + +GR DG+ + +V I + I + IG+I + + S + + + Sbjct: 440 APKSEDIRLF-LSIGRRDGINPKTLVNFIKDTARIRASSIGDIDILENFSFVNISPDVKD 498 Query: 540 EVLQHFTRTRILNKPMNMQLLGDAQPHT 567 +VL ++ + +N+++ + Sbjct: 499 KVLDKCIGVKLNKRKVNIEVANKNRKRK 526 >UniRef50_Q0ST49 ATP-dependent RNA helicase, DEAD/DEAH box family n=23 Tax=cellular organisms RepID=Q0ST49_CLOPS Length = 528 Score = 665 bits (1718), Expect = 0.0, Method: Composition-based stats. Identities = 205/562 (36%), Positives = 314/562 (55%), Gaps = 44/562 (7%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F DLGLK +L+A+ D+G+E+PS IQAE IP L G D++G AQTG+GKTAAF ++ N Sbjct: 6 FDDLGLKESLLKAIKDMGFEEPSQIQAESIPVALEGHDIIGQAQTGTGKTAAFGCAIINN 65 Query: 68 LD--PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 D + K+P+ L+LAPTRELA+QV E + KH + ++V+ +YGGQ D Q+RAL+ G Sbjct: 66 ADFSGKKKSPKALILAPTRELAIQVNEELVRLGKHEK-LSVLPIYGGQPIDRQIRALKNG 124 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 IVVGTPGR+LD ++R +L L+ + LVLDEADEML MGFI+D+E I+ + QT L Sbjct: 125 VDIVVGTPGRVLDLIRRKSLPLNDIGFLVLDEADEMLNMGFIDDLEEIVKSLKTDRQTLL 184 Query: 186 FSATMPEAIRRITRRFMK-EPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 FSATMP I+++ R +MK + + + I+ S T I Q Y+ + + E L R L+ ++ Sbjct: 185 FSATMPPQIKKLARNYMKEDTKHIAIKKSSLTVSKIEQFYFEIKHRDRFETLCRVLDFDE 244 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 +AAIIF +TK EV E ++ GY ++GDM+Q R QTL + K+G LD L+ATDV Sbjct: 245 PNAAIIFCKTKKGVDEVVEKMQARGYMVEGMHGDMSQNHRLQTLRKFKEGSLDFLVATDV 304 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 AARG+DVE ++ V+NYD+P D+ESYVHRIGRTGRA R G A V +E +L+ I++ Sbjct: 305 AARGIDVESVTHVINYDLPQDNESYVHRIGRTGRANREGVAYSLVTPKEYMMLKQIQKHT 364 Query: 365 KLTIPEVELPNAELLGKRRLEKFAAKVQQQLE--SSDLDQYRALLSKIQPTAEGEELDLE 422 K I +P + + + + V+ +E S D ++ + +++ E+ L Sbjct: 365 KSKIIRKAVPTVDEIFQNKHNNIINNVKSTIEEASEDFQKFIPIATQL-----DEDYSLV 419 Query: 423 TLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRD 482 +AAALLK+ + + Sbjct: 420 DVAAALLKIVFDKE---------------------------------SSFDYTSNSIEAP 446 Query: 483 VGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVL 542 V D + VGR DG+ + +V + IS + +G+I + + + ++ Sbjct: 447 VMDETRLFMSVGRRDGITPKSLVNFLKETARISPKQVGDIDIKENFCFANVDADAVNNIM 506 Query: 543 QHFTRTRILNKPMNMQLLGDAQ 564 + ++ + +N+++ + Sbjct: 507 KKSMGKKLNKRTVNIEVAKKRK 528 >UniRef50_B9Y818 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y818_9FIRM Length = 556 Score = 665 bits (1716), Expect = 0.0, Method: Composition-based stats. Identities = 201/574 (35%), Positives = 315/574 (54%), Gaps = 36/574 (6%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F +L L + A+ D GY + + IQ+ CIP ++NG DV+G +QTG+GKTAAF++P+++ Sbjct: 3 FNELNLSPEMSRAIADCGYTEATYIQSACIPVVMNGGDVIGQSQTGTGKTAAFAIPIIEM 62 Query: 68 LD-PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 L+ + K PQ L+L+PTRELA+QV + + F+K+ G+ VA+YGGQ+ Q+ L++G Sbjct: 63 LEVTDRKRPQALILSPTRELAMQVCDEIRKFTKYKEGIRTVAVYGGQQISKQILELKKGA 122 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 IVVGTPGR+LDH++R TL + LVLDEADEML MGF ED+ET++ +P+ QT LF Sbjct: 123 DIVVGTPGRVLDHIRRRTLRFDQCRVLVLDEADEMLNMGFREDIETVIEALPQQRQTVLF 182 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SATMP+ I IT ++ P ++ + P I Q Y+ K E L++ + ++ Sbjct: 183 SATMPKPILEITSQYQTNPVHIKTPQTQINTPKIEQVYYVCPKEAKKEILMQLISMQNPH 242 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 A+IF TK E+ L GY +AAL+GDM Q +R ++ K G+++IL+ATDVAA Sbjct: 243 LAMIFCNTKKMVDELTSDLVSKGYPAAALHGDMKQEMRTGVMDNFKKGKINILVATDVAA 302 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RG+DV+ + +V NYD+P +SE YVHRIGRTGRAG+ G A+ + R++ LR++ERT + Sbjct: 303 RGIDVDSMDVVFNYDLPQESEYYVHRIGRTGRAGKEGLAVTLITARQKYALRDLERTTRS 362 Query: 367 TIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAA 426 + + LP+ E + K RL+ ++ ++ + A++ + + + +A Sbjct: 363 KLTQKPLPSLEEVRKIRLDFLREDLEHRMTRDVPEPLAAIIDTM----KDDGYSYREMAL 418 Query: 427 ALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDM 486 AL G + RP + G Sbjct: 419 ALAYQIAGHEMFDESA---------------------------WNASARPALTVTEKGMS 451 Query: 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFT 546 +L +++G D V IV AIA + + IG I++ A +T+++P+ E+ Sbjct: 452 ELI-LDIGSDQDVSAAIIVSAIATATGLPGKDIGKIRISAQETTVQIPRQFDREIADAMK 510 Query: 547 RTRILNK---PMNMQLLGDAQPHTGGERRGGGRG 577 T I + P+ M G + +RR +G Sbjct: 511 NTPIKGQTVHPLLMVRKGKDYSNLPPKRRAASKG 544 >UniRef50_A6VJ89 DEAD/DEAH box helicase domain protein n=5 Tax=Euryarchaeota RepID=A6VJ89_METM7 Length = 546 Score = 664 bits (1713), Expect = 0.0, Method: Composition-based stats. Identities = 202/557 (36%), Positives = 320/557 (57%), Gaps = 15/557 (2%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNG-RDVLGMAQTGSGKTAAFSLPLL 65 +F +LGL I++AL G+ P+PIQ + IP L+ G RDV+G AQTG+GKTAAF +P+L Sbjct: 3 SFKNLGLSDEIIKALEKKGFTNPTPIQEQAIPILIEGKRDVVGQAQTGTGKTAAFGIPIL 62 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 + +D + Q L+LAPTRELA+QVAE + K + +NV +YGGQ D Q+R L++G Sbjct: 63 ETIDESSRNTQALILAPTRELAIQVAEEIDSI-KGSKRLNVFPVYGGQSIDRQIRELKRG 121 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 QIVVGTPGR+LDH+ R T+ L +S +VLDEADEML MGFI+DVE I+ + + L Sbjct: 122 VQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTEKRMLL 181 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSAT+P++I ++ + +M+E ++++ T QSY+ + K E L R ++ E Sbjct: 182 FSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSYYEIHSRDKFELLSRIIDVEKE 241 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 +IF +TK E++ L GY + L+GDM QA RE+TL++ K ++++L+ATDVA Sbjct: 242 FYGLIFCKTKADVDEISSRLTEKGYAAEGLHGDMTQAQREKTLDKFKARKINVLVATDVA 301 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARG+D+ ++ VVNYDIP + ESYVHRIGRTGRAG+ G A+ FVE E R + I++ Sbjct: 302 ARGIDINDLTHVVNYDIPQNPESYVHRIGRTGRAGKQGYAVTFVEPSEFRKFKYIQKIAN 361 Query: 366 LTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLA 425 I + E+P+ + + + K + +++ LES + + +++ E+ D + + Sbjct: 362 TEIRKEEVPDVKDIIGAKKRKIVSGIKELLESGKYNDCEKMAAELL-----EDADPQEVL 416 Query: 426 AALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGD 485 +A+LK A + +P +R RDR + G R+ R G Sbjct: 417 SAVLKYALKDELSESNYKRIGKPA-------NREGRDRGEGRSEGRRDRGEGRRSFVSGG 469 Query: 486 MQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHF 545 + +G+ D + + +V I+ + D+ R I ++K+F S + + +L F Sbjct: 470 NVRLFVALGKLDKMNPKKLVDHISKKSDVKGRDIDDVKVFEKFSFVTVSSDNAEIILDSF 529 Query: 546 TRTRILNKPMNMQLLGD 562 + + +++ Sbjct: 530 KHEK-RGRRSIIEVASG 545 >UniRef50_Q1QYG3 DEAD/DEAH box helicase-like protein n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QYG3_CHRSD Length = 568 Score = 663 bits (1712), Expect = 0.0, Method: Composition-based stats. Identities = 259/581 (44%), Positives = 350/581 (60%), Gaps = 20/581 (3%) Query: 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 TFA+L L + IL L LGYE PS IQA+ IP LL GRDVLG AQTG+GKTAAF+LPL Sbjct: 8 SPTFAELSLPSTILSTLETLGYETPSLIQAKTIPALLEGRDVLGQAQTGTGKTAAFALPL 67 Query: 65 LQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 L LD + + PQ+LVLAPTRELA QVA + + + ++G+ V++L GGQ Y QL LR+ Sbjct: 68 LSRLDLQRREPQVLVLAPTRELAQQVAASFVQYGRGVKGLEVLSLCGGQEYREQLSGLRR 127 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 G Q++VGTPGR++DHL RG+L L L+ LVLDEADEMLRMGFI+DV+ +++ P+ Q Sbjct: 128 GAQVIVGTPGRVIDHLDRGSLKLDGLNALVLDEADEMLRMGFIDDVKRVVSDTPKDAQRV 187 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 FSAT+P+ I RI ++ +P + I++ T I Q + G K EAL R LE E Sbjct: 188 FFSATLPDEISRIVNHYLVDPLRIAIETKTKTAEGIEQRLVRIEGGAKLEALSRLLEVEP 247 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 DAAI+FVRT+ A + E L G N+AAL+GD++Q+LRE+T+ERLK G++D+LIATDV Sbjct: 248 VDAAIVFVRTRAACTTLVEQLLLRGVNAAALSGDLDQSLRERTVERLKRGKVDVLIATDV 307 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 AARGLDV RI+ V NYD+P D+E+Y HRIGRTGRAGR G A+ F RE+R +R++ER Sbjct: 308 AARGLDVPRITHVFNYDLPQDAEAYTHRIGRTGRAGRTGVAITFAGGREQRRVRDMERVT 367 Query: 365 KLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETL 424 + EVELP+ + + R E F +V L D R L+ + + D L Sbjct: 368 GQQMQEVELPDEDAIRAHRNELFRKRVLDTLARGS-DYQRELIDGLV----DDGYDPVDL 422 Query: 425 AAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVG 484 A A+ MA+ +AP+ + +R R R+D+ R R+R Sbjct: 423 ACAMASMARS-------GEAPIGRLPKPGERRSRQSSGRDDKPNR--------RDRGPSA 467 Query: 485 DMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQH 544 M YR+ VG DGV+ +VGA+ANEG I IG I + + S +ELP +P VL Sbjct: 468 GMTRYRVSVGHKDGVKPGQLVGALANEGGIDGGKIGRIDIRNAFSVVELPNTLPAAVLSR 527 Query: 545 FTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREG 585 + R+ +P+ + A RR G R + Sbjct: 528 IAQARVAGRPLEIAEDHGAPERAPRRRREDGDSTPRRRSQA 568 >UniRef50_B9ZPI5 DEAD/DEAH box helicase domain protein n=2 Tax=Bacteria RepID=B9ZPI5_9GAMM Length = 627 Score = 663 bits (1711), Expect = 0.0, Method: Composition-based stats. Identities = 277/628 (44%), Positives = 369/628 (58%), Gaps = 15/628 (2%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 M+E +FA+LGL + AL LG+ P+P+QA CIP LL G DVLG AQTG+GKT AF Sbjct: 1 MSE-SPSFAELGLSESLARALLQLGFTTPTPVQAACIPALLAGDDVLGEAQTGTGKTGAF 59 Query: 61 SLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 LPL+ ++DP + Q L+LAPTRELA QVA A+ F+ + G+ ++ +YGGQ VQ+R Sbjct: 60 GLPLIDSIDPAQRRVQALILAPTRELAGQVATALEGFAASIDGLEILPVYGGQPMGVQIR 119 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 ALR G Q+VVGTPGR++DH+KRGTL L L +VLDEADEMLRMGF+E++E I+ Q P Sbjct: 120 ALRDGAQVVVGTPGRVVDHIKRGTLTLDALRMVVLDEADEMLRMGFVEEIEWILEQTPAE 179 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 QT LFSATMP IRRI R M+EPQE+RI + DI QSY V K EAL R + Sbjct: 180 RQTTLFSATMPAPIRRIAHRHMREPQEIRIGAGNEAGTDIDQSYCLVDQRHKTEALGRMI 239 Query: 241 EAE-DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299 E E DAAI+F RTK AT E+AEAL G S+ LNGDM Q RE+ + L+DGRLD++ Sbjct: 240 EVEAGLDAAIVFARTKAATAEIAEALNAQGVQSSPLNGDMEQGERERVVADLRDGRLDVI 299 Query: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359 +ATDVAARG+DV RI+ V NYD P D+E YVHRIGRTGRAGR GRA+LF+E R+RR+LR+ Sbjct: 300 VATDVAARGIDVPRITHVFNYDAPGDAEVYVHRIGRTGRAGRKGRAILFLEPRKRRMLRD 359 Query: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEL 419 IER + E ++P+ + RR E+ A ++Q +L Q ALL ++ + E Sbjct: 360 IERLTGKPVREQKVPDRAAVIARREERLAERLQAELAGEASPQLDALLDRLLANGQMGER 419 Query: 420 DLETLAAALLKMAQGERTLIVP-PDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRR 478 DL A QG P P+ +RD DR PR R + Sbjct: 420 DLARALLA--LATQGTPLDGTPNAHDPVTAAASRPERDSHRADRNRDRAPRPSRG----K 473 Query: 479 ERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMP 538 +R DM Y + VGR+ G+ IVGA+ANEG ++ R IG I L HS ++LP + Sbjct: 474 DRGPEADMVRYYMPVGRNHGIAPGAIVGALANEGGLNGRDIGRIGLQDDHSHVDLPAALD 533 Query: 539 GEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERREGGR 598 ++ + N+ + M + ER + G + +RR Sbjct: 534 EAAVRRLGNIHVANRRLEMARSVPTRDSRATERHAP----AARKPRGPGKPAAKRRGPAP 589 Query: 599 GDGRR--FSGERREGRAPRRDDSTGRRR 624 +G+R ++ + +AP R + R Sbjct: 590 ANGKRPAYAAAGKPRKAPSRKAADSRGD 617 >UniRef50_B7VSB7 ATP-dependent RNA helicase n=74 Tax=Gammaproteobacteria RepID=B7VSB7_VIBSL Length = 689 Score = 663 bits (1711), Expect = 0.0, Method: Composition-based stats. Identities = 250/554 (45%), Positives = 352/554 (63%), Gaps = 11/554 (1%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 M+E F +L L IL AL+ +G+ P+PIQA IP LL GRD LG AQTG+GKTAAF Sbjct: 29 MSESVIQFNELALNENILSALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAF 88 Query: 61 SLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 SLPLL ++ PQ +++APTRELA+QVA + + + ++G+ V+ +YGG Q+R Sbjct: 89 SLPLLNKINLNQHKPQAIIMAPTRELAIQVAAEIKNLGRDIKGLKVLEIYGGASIVDQMR 148 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 AL +G IVVGTPGR+ D L R L L + VLDEADEML+MGF++DV I+ Q PE Sbjct: 149 ALSRGAHIVVGTPGRVKDLLTRDRLHLDEAHTFVLDEADEMLKMGFVDDVTWILEQAPES 208 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 Q LFSATMP ++ I R+++ P +V + + T ++Q+YW V G+ K+EA+ R L Sbjct: 209 AQRVLFSATMPPMVKTIVDRYLRNPAKVDVAGTNHTVDKVAQNYWVVKGVEKDEAMSRLL 268 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 E E+ DA+I+FVRT+ T +A+ L G+ +AAL+GD+ Q+LRE+T++ +K G +DIL+ Sbjct: 269 ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV 328 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATDV ARGLDV RI+ V NYDIP D ESY+HRIGRTGRAGR G+A+L V + R+LR I Sbjct: 329 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI 388 Query: 361 ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELD 420 ER K + E++LP + + R+ K A+++ + ES L+ + L+S +Q + E+D Sbjct: 389 ERVTKSQMEEIQLPQRDEVAAARVAKLGAELETEKESKALENFAGLISTLQESL---EVD 445 Query: 421 LETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRER 480 TLAA LLK QG+ L + PM E RD++ R R + RGDR Sbjct: 446 AATLAAMLLKRQQGKSPLFYVGEDPMIAAIE-RDKNRRKERREDRDNGRGDRN------- 497 Query: 481 RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGE 540 + D Y+++VGR+ GV+V+ IVGA+ANE ++ IG IKL + ++LPK M E Sbjct: 498 FNTQDWDTYQLQVGREQGVQVKDIVGALANELGLTKGSIGAIKLDQGSTYVQLPKAMNSE 557 Query: 541 VLQHFTRTRILNKP 554 ++ RI K Sbjct: 558 TAGKLSKLRIRQKE 571 >UniRef50_A5CVQ6 ATP-dependent RNA helicase DeaD n=2 Tax=sulfur-oxidizing symbionts RepID=A5CVQ6_VESOH Length = 608 Score = 662 bits (1709), Expect = 0.0, Method: Composition-based stats. Identities = 264/624 (42%), Positives = 390/624 (62%), Gaps = 27/624 (4%) Query: 1 MAEFET------TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGS 54 M+E ++ F LGL IL L+ +GYE PSPIQ +CI HLLN +D++G AQTG+ Sbjct: 1 MSENKSDQKSPSKFERLGLSNTILNVLDSIGYETPSPIQEQCITHLLNNKDIIGQAQTGT 60 Query: 55 GKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQR 114 GKTAAF LPLL ++ + APQ+L+LAPTRELA+QV+EA+ +++ M+G +V+ +YGGQ Sbjct: 61 GKTAAFVLPLLDKINLNINAPQLLILAPTRELAIQVSEAVQTYARGMKGFHVLPIYGGQS 120 Query: 115 YDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIM 174 YD+QLR L++G +VGTPGR++DH+++ TL L L VLDEADEML+MGFI+D++ IM Sbjct: 121 YDIQLRPLKRGVHAIVGTPGRVMDHIEKKTLKLDNLKSFVLDEADEMLKMGFIDDIKWIM 180 Query: 175 AQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWG-MRKN 233 +IPE Q ALFSATMP I++I ++F+ +P+ ++I++ T I+Q Y V G K Sbjct: 181 QRIPEQRQIALFSATMPNVIKKIAKQFLNQPKIIKIKTKTETATTITQKYCMVGGLSNKL 240 Query: 234 EALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKD 293 EAL R LE FDA IIFVRTK T E+ E L G+++ A+NGD+ Q RE+ + K Sbjct: 241 EALTRILEVTVFDAMIIFVRTKTLTTELTEKLSARGFSADAINGDIQQNQRERIINDYKQ 300 Query: 294 GRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRE 353 G++DILIATD+AARGLDVERIS VVNYDIP D+ESYVHRIGRTGRAGR G A+LFV NRE Sbjct: 301 GKIDILIATDIAARGLDVERISHVVNYDIPQDAESYVHRIGRTGRAGRKGEAILFVSNRE 360 Query: 354 RRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPT 413 RR+L IE + I +ELP+ +++ +R+E F + Q + + +L+ ++ L+ + Q Sbjct: 361 RRMLNTIEHVTRQKITPIELPSVKIINAKRIETFKQNIIQTINNQNLEIFKKLVGEFQQ- 419 Query: 414 AEGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDRE 473 E ++++ +++AL +AQG L++ ++E ++ P+++ R Sbjct: 420 -ENPKIEISQISSALAYIAQGNEPLLL-------SEKESNLGFNQTPKEKIIISIR---- 467 Query: 474 DRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIEL 533 +P + + M Y+IEVG ++ V+ +I+GAIAN+ ++ S YIG+I++F STI+L Sbjct: 468 AKPLKGFPKI-PMCRYKIEVGNNNNVKTSNILGAIANKTNMDSEYIGSIQIFDHFSTIDL 526 Query: 534 PKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGER 593 P + EV +T + K +N+ L R R FS + Sbjct: 527 PAKISNEVFGVLQKTIVCGKHLNIVELTKKNNKDTIVGRTEKRNLN------RGKFSKNK 580 Query: 594 REGGRGDGRRFSGERREGRAPRRD 617 R + S ++ + R+ Sbjct: 581 NNNQRDNKNYHSKNKKYDKHSRKS 604 >UniRef50_C8P265 DEAD/DEAH family ATP-dependent RNA helicase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P265_ERYRH Length = 594 Score = 660 bits (1705), Expect = 0.0, Method: Composition-based stats. Identities = 201/563 (35%), Positives = 309/563 (54%), Gaps = 36/563 (6%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 TF +L L+ I+ A+ + GYE+P+ IQ++ IP LL D+L +QTG+GKTAAF LP+L Sbjct: 18 TFKELELEEEIVRAVTEKGYEEPTDIQSQAIPILLGNHDLLAQSQTGTGKTAAFGLPMLS 77 Query: 67 NLDP-ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 P + K L+L PTREL +QVAE M FSK+ +GVN+ +YGG D Q+R L++G Sbjct: 78 LTQPGDKKRTNSLILCPTRELCMQVAEEMRSFSKYKQGVNIACVYGGSPIDKQIRDLKRG 137 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 IVV TPGRL+DH++R T+ L +VLDEADEML MGFIED+E I + +PE Q A Sbjct: 138 ADIVVATPGRLMDHIRRKTIRLDDCRHIVLDEADEMLNMGFIEDIEEIFSFLPEERQFAF 197 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSATMP+ I +++ +F+ EP+ + + + T I Q Y+TV K + ++ L+ Sbjct: 198 FSATMPKEIVKLSEKFLVEPERITLSRNNLTVSRIKQIYYTVESRDKVDLTIQLLQLHKT 257 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 +IF TK E+ L + G+ + L+GDM Q +R + R K G + +LIATDVA Sbjct: 258 SGTMIFCNTKKMVDELTTQLNKAGFPALGLHGDMKQEMRSMVMSRFKKGMVSVLIATDVA 317 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARG+DV+ + +V+NYDIP + E YVHRIGRTGRAG+ G A+ V R+R ++ IER Sbjct: 318 ARGIDVDSMDVVINYDIPQELEYYVHRIGRTGRAGKEGLAITLVSRRQRYAIKQIERLSN 377 Query: 366 LTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLA 425 TI E LP E L +++ A ++++ + + ++ E E + Sbjct: 378 STIVETPLPTKEQLNDLMVDQLAREIRKWNDHEQGKLFNIAYEGLRN----ENFTQEEII 433 Query: 426 AALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGD 485 A + E L + +++ ++ G+ Sbjct: 434 VAFINKMISESNLEAIKVSK-------------------------------QKDVKNKGE 462 Query: 486 MQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHF 545 + + VG DG+ H+V AIA I + IG IK+ + ST+E+P+ +++ Sbjct: 463 ISRIGLSVGDRDGIAAAHLVSAIATASGIRGKDIGRIKIDDNESTVEVPREFAQDIINKL 522 Query: 546 TRTRILNKPMNMQLLGDAQPHTG 568 + T+I +K + + ++ + T Sbjct: 523 SDTKINSKDVTVTMVDEFAQPTP 545 >UniRef50_Q31AC4 DEAD/DEAH box helicase-like protein n=9 Tax=Prochlorococcus marinus RepID=Q31AC4_PROM9 Length = 593 Score = 660 bits (1703), Expect = 0.0, Method: Composition-based stats. Identities = 230/554 (41%), Positives = 337/554 (60%), Gaps = 10/554 (1%) Query: 2 AEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFS 61 + E F D G IL +L++ GY+ P+PIQ IP L+ GRD+LG AQTG+GKTAAF+ Sbjct: 47 NDNENGFLDFGFNQSILNSLSNKGYKNPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFA 106 Query: 62 LPLLQNLDPELK-APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 LPL++ L + ++LV+ PTRELA QVAE+ +S +A+YGG Y Q+ Sbjct: 107 LPLIEKLADNKELNAKVLVMTPTRELATQVAESFKSYSSESTNFKTIAIYGGTDYRNQIY 166 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 AL++ +VVGTPGR++DH+++GT ++ ++ LVLDEADEML MGF+ED+E I+ Q+P+ Sbjct: 167 ALKRKVDVVVGTPGRIMDHIRQGTFKVNSINCLVLDEADEMLNMGFLEDIEWIIDQLPKN 226 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 Q LFSATMP IR I ++++ +P E+ I+S ISQ + V K +AL R L Sbjct: 227 KQMVLFSATMPNEIRNIAKKYLNDPAEILIKSVKKETQLISQKFLYVQRHHKLDALKRIL 286 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 E + + IIFVRTK T +AEALE G++ A LNGD+ Q RE T++RLK G +DIL+ Sbjct: 287 ELNN-EGVIIFVRTKLLTTSIAEALENLGHSVAVLNGDIPQNQRENTVDRLKKGFIDILV 345 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATDVAARGLDVERI LVVNYD P D E+Y HRIGRTGRAGR+G A+LFV +RE+ LRN+ Sbjct: 346 ATDVAARGLDVERIKLVVNYDFPFDKETYTHRIGRTGRAGRSGEAILFVNHREKHFLRNL 405 Query: 361 ERTMKLTIPEVELPNAELLGKRRLEKFAAKV-QQQLESSDLDQYRAL-LSKIQPTAEGEE 418 E + + I E+ +P+ +++ ++R+EK V + L D ++ +AL + + E Sbjct: 406 ENSTRTKIEEINIPSNKIINEKRMEKLIENVNESSLAKEDNEENKALIIDVLDNLKEKHS 465 Query: 419 LDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRR 478 +D +A A + + G + V D K+ DR+ N R + Sbjct: 466 MDDSNIAMAAINLVIGNKAFFVNEDDSWIHKQNNTDRNRSNRNGNNRMRNSNRRNNF--- 522 Query: 479 ERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMP 538 + Y+ + G+ DGV V +I+ +I N +I+ R IG I++F +S ++LP+ + Sbjct: 523 ---QNDSFETYKFDFGKFDGVRVANIISSICNSTNINGRSIGKIQIFNDYSLVDLPRDLH 579 Query: 539 GEVLQHFTRTRILN 552 E + ++ N Sbjct: 580 RETKNKLKKIKVRN 593 >UniRef50_D1BSR4 DEAD/DEAH box helicase domain protein n=5 Tax=Actinomycetales RepID=D1BSR4_XYLCX Length = 712 Score = 658 bits (1698), Expect = 0.0, Method: Composition-based stats. Identities = 264/649 (40%), Positives = 355/649 (54%), Gaps = 31/649 (4%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 E F LGL A + A+ DLG+ PS IQA+ IP LL GRD+ G+AQTG+GKTAAF LP Sbjct: 47 VEPGFDTLGLPATLEAAVADLGFTTPSAIQAQAIPALLGGRDITGVAQTGTGKTAAFGLP 106 Query: 64 LLQNLDPELKA---PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 LL +++ Q LVL PTRELA+QVAEA+ F+ H+ V V+++YGG Y Q R Sbjct: 107 LLASVEAHRGTRPTVQALVLTPTRELAMQVAEAIESFASHLPDVRVLSVYGGSPYVPQQR 166 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 ALR G +VVGTPGR++DHL+RG L L LVLDEADEMLRMGF EDVE I + P Sbjct: 167 ALRDGVHVVVGTPGRVIDHLERGGLVLDDARFLVLDEADEMLRMGFAEDVEKIFSYAPTQ 226 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 Q ALFSATMP AIR I + +P E+ + +T + Q Y V K AL R L Sbjct: 227 RQVALFSATMPPAIRAIADTHLNDPVEIAVARQSSTVASVHQGYAIVPFRHKVGALTRIL 286 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 D DA+I+F RT++A EV AL G ++A ++GD+ Q RE+ +ERL+ G LD+L+ Sbjct: 287 ATSDADASIVFTRTRSAAEEVGAALIEKGISAATISGDVAQKEREKIVERLRSGALDVLV 346 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATDVAARGLDV+RI LVVN+DIP ++E+YVHRIGRTGRAGR GRA+ FV ER L+ I Sbjct: 347 ATDVAARGLDVDRIGLVVNFDIPREAEAYVHRIGRTGRAGRTGRAVSFVTPHERGKLKFI 406 Query: 361 ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELD 420 E T+K+++ E+++P+ + R + + ++ LD Y+ L+ + T +GEE Sbjct: 407 ENTIKVSLEEIDIPSPRDVSAHRAARLLDSAPARTQAGRLDLYKQLVRNLVTTGDGEEAG 466 Query: 421 LETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPR-----------DRNDRGPR 469 + A+ A + R ++E +R+ R + DRG R Sbjct: 467 VVDPTKAVDLAATLLALAVGDDGPRARAEQEEYEREQAEGRAARQARETRKHEIGDRGAR 526 Query: 470 GDR-EDRPRRERRDVGD------------MQLYRIEVGRDDGVEVRHIVGAIANEGDISS 516 GDR DR RR RD D YR+ VG DGV IVGAI EG ++ Sbjct: 527 GDRFGDRDRRPARDGDDRSHTRGIRRPAAGTRYRVAVGHKDGVNPGGIVGAITGEGGLTG 586 Query: 517 RYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGR 576 +G I +F S S +++ + G L +R R+ + + + + A G R Sbjct: 587 ADVGKIDIFGSFSLVDITAPLDGAQLDRLSRARVAGRALRLTVDRGAP---EGTRSYDRP 643 Query: 577 GFGGERREGGRNFSGERREGGRGDGRRFSGERREGRA-PRRDDSTGRRR 624 R +R E G R +R E P R D R Sbjct: 644 ARAERFDRSDRPVRSDRYERGDASDRPARSDRFERADRPARTDRYERSD 692 >UniRef50_Q46G62 ATP-dependent RNA helicase n=7 Tax=cellular organisms RepID=Q46G62_METBF Length = 579 Score = 656 bits (1693), Expect = 0.0, Method: Composition-based stats. Identities = 204/630 (32%), Positives = 324/630 (51%), Gaps = 58/630 (9%) Query: 3 EFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGR-DVLGMAQTGSGKTAAFS 61 E F LGL +L+AL G+E+P+PIQ + IP L G D++G AQTG+GKT AF Sbjct: 2 EKLAKFKALGLSDSMLKALKKKGFEEPTPIQEKVIPLFLKGECDIIGQAQTGTGKTTAFG 61 Query: 62 LPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 P+++ + + Q +VL PTRELA+QV+E + K + +++V +YGGQ Q R Sbjct: 62 APIIEKIPEKSGKVQAIVLTPTRELAIQVSEELNSL-KGDKKLHIVPIYGGQSMTQQFRM 120 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 L+ G IVVGTPGR++DHL+R +L+L ++ VLDEADEML MGFI+D++ I+ Sbjct: 121 LKSGVDIVVGTPGRVIDHLERKSLNLENIAYFVLDEADEMLNMGFIDDIKEILKATGPDK 180 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 + FSATMP+ I I ++ MK + V I+ Q Y+ V K EAL R ++ Sbjct: 181 RMLFFSATMPKPILGIIKKHMKNYEYVAIKKEDLDVNLTEQIYFEVKESDKFEALCRIID 240 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 ED ++F RTK T ++A+ L GY + AL+GD++Q RE+ L R + +++IL+A Sbjct: 241 IEDEFYGLVFCRTKTDTSQLAQKLGDRGYAADALHGDLSQREREKILNRFRKQKINILVA 300 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 TDVAARG+D+ ++ V+NY +P D ESYVHRIGRTGRAG+ G A+ FV + E R L I+ Sbjct: 301 TDVAARGIDIMDLTHVINYSLPQDPESYVHRIGRTGRAGKQGTAITFVTSTEYRRLTYIK 360 Query: 362 RTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDL 421 +T K + +P + + K + + A++++ +++ + + K EE Sbjct: 361 KTSKSAMKRGRIPEIKDVIKAKRARVKAELEETIKNEEYGDCLEMSEKFL-----EEYPA 415 Query: 422 ETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERR 481 E + AALLK + F++ D DR+ + Sbjct: 416 EKILAALLKYS-------------------FKEMFDESMYTEISGSSYVDRKGK------ 450 Query: 482 DVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEV 541 I +G+ DG+ + I E +S I + ++F S + +P + Sbjct: 451 -----TRLFIAMGKADGMTPEKLCEFIQEETGVSDLKIRDAEIFPHFSFVTVPFAQASAL 505 Query: 542 LQHFTRTRILNKPMNMQLLGDAQ---PHTGGERRGGGRGFGGERREGGRNFSGERREGGR 598 L+ F + + ++L ++ + E RGG R G R++S Sbjct: 506 LEIFKDKK-RGRKPFIELAQKSKRRSSKSADEYRGGTRN-------GSRSYSRN------ 551 Query: 599 GDGRRFSGERR-EGRAPRRDDSTGRRRFGG 627 ++G R ++ RD T ++++ Sbjct: 552 ---DSWNGSRNTNSKSYTRDTRTAKKKYSS 578 >UniRef50_D0WN23 ATP-dependent RNA helicase DeaD n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WN23_9ACTO Length = 767 Score = 655 bits (1691), Expect = 0.0, Method: Composition-based stats. Identities = 247/632 (39%), Positives = 345/632 (54%), Gaps = 36/632 (5%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F DLGL +L A+ +LG+ P+ IQA IP LL GRDV+G+AQTG+GKTAAF+LPLL + Sbjct: 129 FDDLGLPEDLLSAVKELGFSAPTAIQAAAIPILLRGRDVVGVAQTGTGKTAAFALPLLAH 188 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 +DPE + Q LVLAPTRELA+Q A+A+ F+ RGV+V A+YGG Y QL+AL G Q Sbjct: 189 IDPEKREVQALVLAPTRELAMQGAQAIESFAAKSRGVDVAAVYGGSSYLPQLKALEGGAQ 248 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 +VVGTPGR++D + RG L L + VLDEADEMLRMGF EDVE I +++PEG +ALFS Sbjct: 249 VVVGTPGRIMDLMDRGALRLDAVRYFVLDEADEMLRMGFAEDVEKIASEVPEGRISALFS 308 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 ATMP IRR+ R + + +EV I TT + Q Y V K AL R L + A Sbjct: 309 ATMPPPIRRVAERHLSDAEEVTISRPATTVSTVKQMYAVVPERHKIGALARVLAVTEAQA 368 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 A++FVRT++ ++ L G +AAL+GD+ Q RE+ + RL+DG LD+L+ATDVAAR Sbjct: 369 ALVFVRTRSTAEDLTIELGARGVATAALSGDVVQKEREKLVARLRDGTLDVLVATDVAAR 428 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 GLDV+RI LVVN+D+P ++++YVHRIGRTGRAGR G ++ FV +ER LR IE+ Sbjct: 429 GLDVDRIGLVVNFDVPRETDTYVHRIGRTGRAGRTGESITFVTPKERPRLRRIEKQTGSR 488 Query: 368 IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAA 427 + ++ELP + K R + + ++ L Y +L + A Sbjct: 489 MEQIELPTPAEVSKLRARRTVEQAMARVAKGRLWVYEEILEDFVAEQAKAAAQSGSGAHL 548 Query: 428 LLKMAQGERTLIVPPDAPMRPKREFRDRDDRGP-------------------------RD 462 + P + +D GP + Sbjct: 549 DSHEHGSDSYSQHDSHPLSDPGSQLDSKDQAGPVSLETLTMALLALAVRDPGPVAGEEPE 608 Query: 463 RNDRGPRGDREDRPRRE---RRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYI 519 R +RE RPR+E RR + + YR+EVG D V+ IVGA+ +EG +S + Sbjct: 609 RLTEDFGSEREGRPRKERQPRRQMKNSVRYRVEVGHKDRVKPGAIVGALTHEGGLSGSDL 668 Query: 520 GNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFG 579 G+I +F + S +E+ + E + ++ R+ + + + GG R GRG Sbjct: 669 GHIDIFPTFSLVEIGVPLSPEARKRISQARVSGRALKISEDRG----PGGFRDDAGRG-- 722 Query: 580 GERREGGRNFSGERREGGRGDGRRFSGERREG 611 R ++S R G R R E Sbjct: 723 --RPRRDSDYSDRGRSRGDRGSRYDRTTRDER 752 >UniRef50_B0P7Y4 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P7Y4_9FIRM Length = 572 Score = 652 bits (1684), Expect = 0.0, Method: Composition-based stats. Identities = 224/590 (37%), Positives = 331/590 (56%), Gaps = 35/590 (5%) Query: 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 ET F D+GL +++A++D+ Y + + IQA+ IP L+ G DV+G + TG+GKTAAF +P Sbjct: 3 ETKFEDIGLSPELVQAVSDMNYTQATGIQAQAIPLLMQGADVIGRSSTGTGKTAAFGIPA 62 Query: 65 LQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 ++ ++ LKAPQ+LVL+PTRELA+Q+A+ M F+K+ GV V A+YGG D Q+RALR Sbjct: 63 VERIESGLKAPQVLVLSPTRELAMQIADEMRKFAKYKPGVCVAAVYGGAPMDAQIRALRA 122 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 IV+GTPGR++DH++R TL L L +VLDEADEML MGF++D++TI+A+ P+ QT Sbjct: 123 -ANIVIGTPGRVMDHMRRHTLRLDDLRTVVLDEADEMLNMGFLDDIQTILAETPDTRQTV 181 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 LFSATMP AI +IT +F+ +PQ V I++ T + Q ++ V RK +AL L+ D Sbjct: 182 LFSATMPPAILKITDKFLHDPQTVDIRTGQRTIAAVEQFFYRVPQARKMDALNLLLQYHD 241 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 A++F TK + E L +G+ + ++GDM QA R Q ++ +DG+ IL+ATDV Sbjct: 242 PKRAVVFCNTKAMVDSLTEYLSDHGFRALGIHGDMKQAGRTQVMQSFRDGKTRILVATDV 301 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVE-NRERRLLRNIERT 363 AARG+DVE I V N+DIP + E Y+HRIGRTGRAGR G + V R+ +R + R Sbjct: 302 AARGIDVENIEAVFNFDIPQEFEHYIHRIGRTGRAGRTGMSHTLVCGARQVDTIRQLRRF 361 Query: 364 MKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLET 423 + I E LP + + +++ EKFAA+V + LE+ D+Y ++ A D+ Sbjct: 362 INADIREAPLPIGDEIVRKKREKFAARVARTLEA---DEYGKWGEQLDAIAAERGCDMRD 418 Query: 424 LAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDV 483 +A AL +M ++P P +R RG R Sbjct: 419 IACALAQMIAARDKKLIPVLKIPAPG----ERPVRGGRR--------------------- 453 Query: 484 GDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQ 543 + R + GR V + V AIA+ + +R IG I +F S IEL + VL+ Sbjct: 454 ---VVLRADAGRAQNVTPANFVAAIADASGLPARAIGKIDIFEDSSLIELYENDALTVLE 510 Query: 544 HFTRTRILNKPMN--MQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSG 591 TRI ++ + GG G + F + R+ + Sbjct: 511 AMRSTRIRGLEVHFALTSEKPRYAARGGVTCGREKPFFRPKPSQRRDRAS 560 >UniRef50_C5C5R9 DEAD/DEAH box helicase domain protein n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5C5R9_BEUC1 Length = 589 Score = 652 bits (1682), Expect = 0.0, Method: Composition-based stats. Identities = 253/586 (43%), Positives = 345/586 (58%), Gaps = 16/586 (2%) Query: 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 E +F DLGL +L+A+ LG+ P+PIQ IP LL+GRD++G+AQTG+GKTAAF LPL Sbjct: 19 EPSFDDLGLPQALLDAVTGLGFTTPTPIQTAAIPALLSGRDLVGVAQTGTGKTAAFGLPL 78 Query: 65 LQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 L +DP+L A Q LVL PTRELA+QV++A+ F GV V+ +YGG + QLR L + Sbjct: 79 LAAVDPQLAAVQALVLTPTRELAIQVSDAVASFVPSGAGVKVLPIYGGASFVPQLRGLER 138 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 G Q+VVGTPGR++D L+RG+LDL L LVLDEADEMLRMGF EDV+ I+A+ P Q A Sbjct: 139 GAQVVVGTPGRVIDLLERGSLDLDALRYLVLDEADEMLRMGFAEDVDVILAKTPATKQVA 198 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 LFSATMP IR++ ++ P+E+ + T ++Q+Y V K EAL R L D Sbjct: 199 LFSATMPPPIRKVAETHLRNPEEIAVARQATPIAAVTQTYAIVPYRNKAEALSRVLATSD 258 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 DAAI+FVRT+ EV AL G N+A+++GD+ Q RE+ +ERL+ G LD+L+ATDV Sbjct: 259 ADAAIVFVRTRETAEEVGTALASRGINAASISGDVAQRERERIVERLRSGALDVLVATDV 318 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 AARGLDVERI LVVN+D+P + E+YVHRIGRTGRAGR G AL F+ +E+ LR IER Sbjct: 319 AARGLDVERIGLVVNFDVPREVETYVHRIGRTGRAGRTGNALTFLTPKEKPRLRTIERVT 378 Query: 365 KLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETL 424 + E +P + R A +L + D+ +R ++ +D + Sbjct: 379 GSRLVEATIPTNAEVAAHRTGAALATAHARLGAGDVSAHR---ERLVAHVAELGVDPLDV 435 Query: 425 AAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVG 484 AAALL +A G+ D + D + + R R RR G Sbjct: 436 AAALLALAVGDDGAPAGDDLAL------------PAHDGDRQRGFDGDRGRERGGRRGGG 483 Query: 485 DMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQH 544 D + YRI VG DGV + IVGAI EG + IG I +F S S +E+P G+ +V + Sbjct: 484 DGEKYRIAVGHRDGVSPQAIVGAITGEGGLRGADIGKIDIFPSFSLVEIPGGVSPDVARR 543 Query: 545 FTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFS 590 ++ +P+ ++L P+ G GG R G R + + Sbjct: 544 IGAAKVAGRPLRIRLDDG-PPNRGHRSGGGQRDARGPRDSRRPSRA 588 >UniRef50_B1ZXI6 DEAD/DEAH box helicase domain protein n=3 Tax=Verrucomicrobia RepID=B1ZXI6_OPITP Length = 594 Score = 648 bits (1673), Expect = 0.0, Method: Composition-based stats. Identities = 209/579 (36%), Positives = 315/579 (54%), Gaps = 32/579 (5%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 FA+LGL IL A++ +G+E+ +PIQA IP +L GRDV+G++ TGSGKT AF++P L+ Sbjct: 6 FAELGLSPEILRAVDKMGFEEAAPIQAAVIPTVLGGRDVVGVSSTGSGKTVAFAIPALER 65 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 +DP+L+A Q+LVL PTRELAVQVAE M ++ RG+ V +YGGQ Y+ Q RAL G Q Sbjct: 66 VDPKLRAVQVLVLCPTRELAVQVAEEMGHLAQFKRGIMGVPIYGGQSYERQYRALAAGSQ 125 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 +V+GTPGR++DH++RGTL L L +VLDEAD ML MGF ED+E I++ +P Q FS Sbjct: 126 VVIGTPGRVMDHMERGTLKLGALKLVVLDEADRMLDMGFREDIEKILSAVPVPRQLLFFS 185 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 ATMP I+ + +R ++P ++I++ P + Q Y+ V K EAL R ++ DF Sbjct: 186 ATMPRPIQELIKRTARDPAWIKIEAVAQNAPQVEQIYFEVDRRSKLEALTRLIDVHDFRY 245 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 I+F TK ++ E L GY L+GD++Q R++ +++ + + LIATDVAAR Sbjct: 246 GIVFCSTKVMVDDLDEHLHARGYAVDRLHGDLSQTQRDRVMDKFRRRGFEFLIATDVAAR 305 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 GLDV+ + +V NYD+P D+E Y HRIGRTGRAG++GRA FV +E L+ + R KL Sbjct: 306 GLDVDDLEVVFNYDLPNDAEDYTHRIGRTGRAGKSGRAFTFVSGQEIYKLQAMVRWAKLD 365 Query: 368 IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTA------------- 414 + LP+ + + + R F K++ LE+ + + ++ ++ Sbjct: 366 LRRGRLPSLDEVEEARTNVFFEKIRAALEAKEFKPHDRMIDRLLDQGYASTDICSALIHL 425 Query: 415 -------------EGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPR 461 E + A K A RT +RP + P Sbjct: 426 LQGGSTGTPAAVHESAKASAAAPDWARRKSAPESRTAFPSEAGEIRPSPKASSFAKPTPD 485 Query: 462 DRNDR-----GPRGDREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISS 516 D G + + RP R + G M + VGR+ V IVG IA +++ Sbjct: 486 KTADGLPALAGRKKQKYARPPRTGAEPG-MSPVVLNVGREHQVTPADIVGKIAGVTRLAA 544 Query: 517 RYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPM 555 +G I + H+ +++ + V++ R+ + Sbjct: 545 SIVGAIDIHERHTLVDVAENAVPVVIKKLAGIRLKGVAL 583 >UniRef50_Q0AVQ9 ATP-dependent RNA helicase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AVQ9_SYNWW Length = 530 Score = 647 bits (1669), Expect = 0.0, Method: Composition-based stats. Identities = 210/547 (38%), Positives = 312/547 (57%), Gaps = 43/547 (7%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 F +GLK +L+ +++ G+EKP+PIQ + IP + G D++G AQTG+GKTA+F +P+L Sbjct: 5 NFYSMGLKTDLLQMIDEKGFEKPTPIQVKSIPIAMAGLDLMGQAQTGTGKTASFGIPILN 64 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 + + + Q LVL PTRELAVQV E ++ S+ MR + V+A+YGGQ ++QLR+LR+ P Sbjct: 65 RV-IKGEGLQALVLCPTRELAVQVTEEISSLSRRMR-IQVLAIYGGQSIELQLRSLRRNP 122 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 +I+VGTPGRL+DH+ RGT+ LS L +VLDEADEML MGF+ D++ I++Q P QT LF Sbjct: 123 EIIVGTPGRLMDHMNRGTISLSPLKYVVLDEADEMLDMGFLPDIQKILSQCPRERQTFLF 182 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SAT+P+ +R + +FMK+P+ + I+S T P+I Q Y+ V RK E L R ++A+ Sbjct: 183 SATLPDEVRELGTKFMKQPEIILIESPERTVPEIEQYYYQVNSRRKIETLCRIIDAQQPP 242 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 ++IF RTK E+A L GYN+ AL+GDM+Q R+ + + G IL+ATD+AA Sbjct: 243 ISLIFCRTKRNADELARVLTSRGYNADALHGDMSQRERDHVMHGFRQGNTKILVATDLAA 302 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RGLD+E ++ V N+DIP D +SY+HR+GRTGRAGR+G A+ VE + RLLR IER Sbjct: 303 RGLDIELVTHVFNFDIPEDLDSYIHRVGRTGRAGRSGIAITLVEPTQIRLLRMIERHTGK 362 Query: 367 TIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAA 426 I LP ++R + +V+Q + D +L K+ D E + A Sbjct: 363 RIERALLPTLAEAVEKRQDLLLERVRQA-SAEPGDVCLSLAEKLMQQG-----DPEKMLA 416 Query: 427 ALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDM 486 A LK+ E + P M Sbjct: 417 AALKLLIDEEPDFEMAELPESDD-----------------------------------SM 441 Query: 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFT 546 + GR G+ R ++ IA +S + +G+I++ + + +E+P EV + F Sbjct: 442 AHLELPAGRLQGIHPRQLLEFIATHTSLSPQRVGDIEINRNSTFVEVPMDYIHEVYEAFE 501 Query: 547 RTRILNK 553 + R K Sbjct: 502 KYRRTQK 508 >UniRef50_UPI00016C471F RNA helicase DeaD n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C471F Length = 572 Score = 646 bits (1668), Expect = 0.0, Method: Composition-based stats. Identities = 224/564 (39%), Positives = 322/564 (57%), Gaps = 16/564 (2%) Query: 2 AEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFS 61 E E+ FA LGL + ++E L LGYE+P+PIQ E IP L+ G D++G A TG+GKTAAFS Sbjct: 17 TETESGFAKLGLDSRLVERLTGLGYEEPTPIQREAIPPLIEGHDLIGRAATGTGKTAAFS 76 Query: 62 LPLLQNL--DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119 LP+L L P L+L PTRELA+QVAE++ + + + GV V+ +YGG D Q+ Sbjct: 77 LPILHGLARSTARTKPTSLILVPTRELAMQVAESVAKYGQPL-GVRVLPIYGGAPMDQQI 135 Query: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179 RAL +G +VV TPGR LDH++R TL L ++ +VLDEADEML MGF ED+E I+A P Sbjct: 136 RALDRGIDVVVATPGRALDHMRRTTLKLDAITVVVLDEADEMLDMGFAEDIEAILAATPT 195 Query: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTR---PDISQSYWTVWGMRKNEAL 236 QTALFSATM I+ I + +K E+ + P + Q+ + V K AL Sbjct: 196 ERQTALFSATMAPRIKAIAVKHLKNATEIHVTRDPVPAGELPKVRQTAYVVQRQYKLAAL 255 Query: 237 VRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRL 296 R L+ E AA+IF +T++ E+ EAL GY AL+G M Q R++ + + G+ Sbjct: 256 GRVLDGESPAAALIFCKTRSEVDELTEALGGRGYRPEALHGGMAQDARDRVMRLFRAGQA 315 Query: 297 DILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRL 356 ++L+ATDVAARGLDVE ++ VVN+ +P+ E+YVHRIGR GRAGR G A+ E RE+ Sbjct: 316 NLLVATDVAARGLDVEHLTHVVNFSLPLGIENYVHRIGRVGRAGREGVAITVAEPREQGA 375 Query: 357 LRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEG 416 LR IER I ++P A L ++RLE+ +++ + + +L+ +RA+ + Sbjct: 376 LRAIERHTGQRIEYGQVPTAATLREKRLERTKVAIRETVAAGELEAFRAMFGSLVG---- 431 Query: 417 EELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRP 476 ELD +A A LK+A R + D P P R DR RD N PR Sbjct: 432 -ELDPTDVALAALKLAHRARGGDI-DDGPDIPVATVPQRGDRNGRDNNPLPPRRGAGAF- 488 Query: 477 RRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKG 536 R + I GR+ G+ R +VGAIANE + R I +I++ S +++P+ Sbjct: 489 ---RGPGPRLARIFISAGREAGIMPRDLVGAIANEAGLPGREIHSIEITERFSLVDVPED 545 Query: 537 MPGEVLQHFTRTRILNKPMNMQLL 560 V++ R+ + ++ + Sbjct: 546 AAEHVIESLNGVRLRGRRVSARRD 569 >UniRef50_A4C1L2 ATP-dependent RNA helicase n=2 Tax=Polaribacter RepID=A4C1L2_9FLAO Length = 609 Score = 645 bits (1666), Expect = 0.0, Method: Composition-based stats. Identities = 218/627 (34%), Positives = 337/627 (53%), Gaps = 32/627 (5%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGR-DVLGMAQTGSGKTAAFSLPL 64 +TF +LGLK PI +AL DLGYE+P+ IQ + IP +++ R D+ AQTG+GKTAAFSLP+ Sbjct: 2 STFLELGLKEPINKALTDLGYEQPTVIQEKAIPQIISSRSDLKAFAQTGTGKTAAFSLPI 61 Query: 65 LQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 L+ LD Q ++L+PTRELAVQ+ + DF K++ V V +YGG + Q+R+L++ Sbjct: 62 LELLDSNSGNVQAIILSPTRELAVQIGNNIKDFCKYLPDVKVTTVYGGSSMEDQIRSLKR 121 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 G QIVVGTPGR +D +KR L L + LVLDEADEML MGF ++++ ++ P+ QT Sbjct: 122 GSQIVVGTPGRTVDLIKRRALKLGNVKWLVLDEADEMLNMGFKDELDKVLEATPDTKQTL 181 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 LFSAT P+ + I + +M +P E+ +S Y++V + AL R + Sbjct: 182 LFSATFPKEVESIAKNYMTKPVEITSGQKNQGADSVSHEYYSVTERTRYPALKRIADLNP 241 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 AIIF RT+ T EVA+ L ++GY++ AL+GD++Q R+ + + + + IL+ATDV Sbjct: 242 DIYAIIFCRTRRETQEVADNLIKDGYSADALHGDLSQGQRDSVMGKFRKKTIQILVATDV 301 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 AARGLDV ++ V+N+ +P E+Y HR GRTGRAG G +++ V +E+ LR IE+ + Sbjct: 302 AARGLDVTELTHVINHKLPDQIENYTHRSGRTGRAGNTGISIVLVNGKEKGKLRPIEKII 361 Query: 365 KLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETL 424 + E ++P+ + + + +L KV + Q L I EG LD E L Sbjct: 362 QKKFTEAKVPSGKDICQNQLMSLIDKVVNI--EVNETQINDFLPSIYEKLEG--LDREQL 417 Query: 425 AAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVG 484 + + + L +A +D +D +D + R R + Sbjct: 418 IQKFVSL-EFNTMLAYYENA--------KDLNDLSSKDNS-------------RARTENE 455 Query: 485 DMQLYRIEVGRDDGVEVRHIVGAIANEGDI-SSRYIGNIKLFASHSTIELPKGMPGEVLQ 543 +M + I +GR D + ++G I NE +I IG+I + + S E+ K + L+ Sbjct: 456 NMTRFFINIGRKDNLNPGKLIGLI-NEQNIGDKVEIGSIDILDTFSFFEIDKNFEDKTLE 514 Query: 544 HFTRTR--ILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGE-RREGGRGD 600 F+ + + +N+++ + GG R GGGR G ++EGG + R + Sbjct: 515 AFSSNQPDFDGRSVNIEITKKERASGGGRRGGGGRKPFGGKKEGGFGRRRDTEGSSSRRN 574 Query: 601 GRRFSGERREGRAPRRDDSTGRRRFGG 627 S R R R R+ GG Sbjct: 575 SDTGSSRRSSDRPDRNSGGGDRKSSGG 601 >UniRef50_A9NFC3 DEAD box ATP-dependent RNA helicase n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NFC3_ACHLI Length = 547 Score = 644 bits (1662), Expect = 0.0, Method: Composition-based stats. Identities = 197/551 (35%), Positives = 310/551 (56%), Gaps = 11/551 (1%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F DL + AL LG+ + +PIQ + IP ++ G D++G AQTG+GKT AF +P+++ Sbjct: 5 FNDLPILDTTKVALEKLGFTEATPIQEQAIPKMILGLDLIGQAQTGTGKTFAFGIPMVEK 64 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 D L+ Q L+L PTREL QV + + K + V + GG+ Y+ Q + L + P Sbjct: 65 TDTSLRQTQGLILTPTRELTNQVYKEIIKLVKFYPELRVTTIVGGESYEKQFKELDRKPH 124 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 I+V TPGR++DH+ RGT+DLS ++ L LDEADEML+MGF +D+E I+ PE QT LFS Sbjct: 125 IIVATPGRIIDHIDRGTVDLSHITTLTLDEADEMLKMGFQDDIERILQTTPETRQTVLFS 184 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 ATMP I++I + + K P+ ++I++ T I+Q+Y+ V K L R L+ E+ Sbjct: 185 ATMPAFIKKIAKNYQKNPELIKIEAKSLTVDRITQAYFLVKEKEKQSLLERLLDFENPST 244 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 AIIFV TK + E+L++ G+ + AL+GD+ Q+ R + R + +L IL+ATDVAAR Sbjct: 245 AIIFVNTKAGADRITESLQKAGFTADALHGDLKQSQRTYVMNRFRSKQLSILVATDVAAR 304 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 GLDV+ + ++VNYD+P E YVHRIGRTGRAG+ G+A FV +RR+L + K Sbjct: 305 GLDVDDVEIIVNYDLPQQDEIYVHRIGRTGRAGKKGKAFTFVTPLKRRMLDMLAHYTKAD 364 Query: 368 IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAA 427 I +E+P A+ + K +L+ F K++ +L + + A+ + ++L L L + Sbjct: 365 IKRLEVPTADDVYKEQLKTFKHKIKTELANEYPNHLEAIKELLVDEGSKDQL-LNYLLDS 423 Query: 428 LLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDMQ 487 +L + T+ + P+ R R +D+RG ND+G + R R R G Sbjct: 424 MLPTKKTYETIEIIPEKASR-----RSQDERG----NDKGRKDSRSSRDASPARGSGQYV 474 Query: 488 LYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTR 547 + + +G+ DG+ + + E I S+ IG+I+ + + L K L Sbjct: 475 DFTLNIGKADGLTPPTLFKFMEKEYGIFSKNIGDIRHHKNETVFGLRKDSVRR-LNAKKE 533 Query: 548 TRILNKPMNMQ 558 + + ++ Sbjct: 534 VNYKGRKVVIK 544 >UniRef50_Q48FQ8 ATP-dependent RNA helicase, DEAD box family n=23 Tax=Pseudomonadaceae RepID=Q48FQ8_PSE14 Length = 570 Score = 644 bits (1662), Expect = 0.0, Method: Composition-based stats. Identities = 259/564 (45%), Positives = 348/564 (61%), Gaps = 14/564 (2%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 M + FA L L I+ A+ GYE+PS IQ + IP +L G D++G AQTG+GKTAAF Sbjct: 12 MTQEIGGFAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAF 71 Query: 61 SLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 +LP+L +DP + PQ L+LAPTRELA+QVA A ++K M GV VVA+YGG QL+ Sbjct: 72 ALPILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK 131 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 A+R G QIVV TPGRL DHL+R L+ ++ LVLDEADEML++GF++D+E I +PE Sbjct: 132 AIRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPET 191 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 QT LFSAT+P++IR I R +++P+ V+IQ+ T I Q++ V +K A++ L Sbjct: 192 RQTVLFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL 251 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 E EDFDA I+FVRTK ATL++A ALE GY +AALNGD+ Q RE+ ++ LKDGRLDI++ Sbjct: 252 EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV 311 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATDVAARGLDV RI+ V N D+P D ESYVHRIGRTGRAGR GRALL V RERR+L+ I Sbjct: 312 ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI 371 Query: 361 ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQL---ESSDLDQYRALLSKI--QPTAE 415 ER + EV LP+A+ + R++K + + ES+ D L + I P A Sbjct: 372 ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIGCSPRAL 431 Query: 416 GEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDR 475 L + L +A ER + P+ R R R G DR DR R R Sbjct: 432 AAALLRKATNGQALTLAAIERERPLVPNNAPRGDRPERS----GSSDRGDRPERERRAPV 487 Query: 476 PRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPK 535 P E R R +G DG+ ++++GAI NEG ++ IG I++ S S +ELP+ Sbjct: 488 PLAEGR-----ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPE 542 Query: 536 GMPGEVLQHFTRTRILNKPMNMQL 559 +L TR+ K + ++ Sbjct: 543 DGLERLLTKLKDTRVAGKQLKLRR 566 >UniRef50_A5FH88 DEAD/DEAH box helicase domain protein n=21 Tax=Bacteroidetes RepID=A5FH88_FLAJ1 Length = 634 Score = 637 bits (1644), Expect = 0.0, Method: Composition-based stats. Identities = 202/642 (31%), Positives = 329/642 (51%), Gaps = 50/642 (7%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNG-RDVLGMAQTGSGKTAAFSLPLLQ 66 F LGL +L+A+ DLG+E PS +Q + IP LL D++ +AQTG+GKTAAF PL+Q Sbjct: 4 FEQLGLNESLLKAILDLGFENPSEVQEKAIPLLLEKDTDMVALAQTGTGKTAAFGFPLIQ 63 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 +D + + Q LVL+PTREL +Q+ + ++SK+ +G+NVVA+YGG Q R +++G Sbjct: 64 KIDADNRNTQALVLSPTRELCLQITNELKNYSKYEKGINVVAVYGGASITEQAREIKRGA 123 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 QI+V TPGR+ D + RG +++ + +LDEADEML MGF ED+ +I++ P+ T LF Sbjct: 124 QIIVATPGRMQDMINRGLVNIKNIDYCILDEADEMLNMGFYEDIVSILSDTPDQKNTWLF 183 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SATMP+ + RI ++FM EP E+ + + + +S ++ V + EAL R +A Sbjct: 184 SATMPQEVARIAKQFMSEPVEITVGAKNSGSATVSHEFYLVNARDRYEALKRLADANPDI 243 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 +++F RTK T VAE L +GY++AAL+GD++QA R+ ++ + ++ +L+ATDVAA Sbjct: 244 FSVVFCRTKRDTQAVAEKLIEDGYSAAALHGDLSQAQRDGVMKSFRGRQIQMLVATDVAA 303 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RG+DV+ ++ VVNY +P + E+Y HR GRTGRAG+ G +++ V E R + +IER +K Sbjct: 304 RGIDVDNVTHVVNYQLPDEIETYNHRSGRTGRAGKLGTSIVIVTKSELRKISSIERIIKQ 363 Query: 367 TIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAA 426 E +P+ + + +L A K++ ++D Y ++ + EEL + ++ Sbjct: 364 KFEEKAIPSGIEICEIQLLHLANKIKDTEVDHEIDNYLPAINNVLEDLSKEELIKKMVSV 423 Query: 427 ALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDM 486 + + D + E R+R D PR+ N+ G Sbjct: 424 EFNRFITYYKK---NRDISTQSSGERRERGDSEPREFNNNGA------------------ 462 Query: 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFT 546 Y + +G D + + + D+ + + + S +V+ Sbjct: 463 VRYFVNIGSRDNFDWMSLKDYLKETLDLGRDDVFKVDVKEGFSFFNTDPEHTDKVMDILN 522 Query: 547 RTRILNKPMNMQL-------------------------LGDAQPHTGGERRG--GGRGFG 579 ++ + +N+++ G+ P G G R Sbjct: 523 NVQLEGRRINVEISKNDGGGRRDHNNRGGGRNSGGQRREGNFAPRREGSGGGFRSDRNSA 582 Query: 580 GERREGGRNFSGERREGGRGDGRRFSGERREGRAPRRDDSTG 621 R G F +R R G R + E RAPRR +S G Sbjct: 583 PRREGSGGGFRSDRNSAPREGGFRRN-EGGSDRAPRRSESFG 623 >UniRef50_B8FMI0 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FMI0_DESAA Length = 567 Score = 633 bits (1635), Expect = e-180, Method: Composition-based stats. Identities = 194/569 (34%), Positives = 309/569 (54%), Gaps = 6/569 (1%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNG-RDVLGMAQTGSGKTAAFSLPLLQ 66 F LGL + A+ LG+EKP+PIQ + IP+L+ G RD +G+AQTG+GKT A+ LPL+Q Sbjct: 3 FRILGLSDELARAVESLGFEKPTPIQEKAIPYLIEGERDFVGLAQTGTGKTGAYGLPLIQ 62 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 ++D + PQ +V+ PTREL +Q+A + DF+K+M + V A+YGG Q+R ++ G Sbjct: 63 SIDLSIPRPQAIVICPTRELCLQIAGDLRDFAKYMEDIRVAAVYGGADIVKQIRTVKGGA 122 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 QI+ TPGRLLD + R + ++ +VLDEADEML MGF ED+ I++ +P+ +T LF Sbjct: 123 QIIAATPGRLLDLINRKAIKPGHVTRVVLDEADEMLNMGFQEDINAILSSLPDERRTWLF 182 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SATMP+ + I ++ P EV + PDIS + + + AL R L+ Sbjct: 183 SATMPKGVAAIAAKYQTNPVEVTMGGRNQASPDISHICYMIHAKNRYAALKRILDYCPDM 242 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 ++F RT+ T E+AEAL +GYN+ AL+GD++Q R+Q + R + + +L ATDVAA Sbjct: 243 FGLVFCRTRKDTQEIAEALMADGYNADALHGDLSQPQRDQVMGRFRRKAVQVLAATDVAA 302 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RGLDV+ IS V++Y +P D E+Y HR GRT RAG+ G+++ + RE L+++ER K Sbjct: 303 RGLDVDDISHVIHYVLPDDPEAYTHRSGRTARAGKQGKSIALITPRENYRLKDLERRGKF 362 Query: 367 TIPEVELPNAELLGKRRLEKFAAKVQQ-QLESSDLDQYRALLSKIQPTAEGEELDLETLA 425 + LP + ++++ A K+ + +D+ +Y + + EE+ + ++ Sbjct: 363 SFQLDSLPQGRDICQKQVAGLAEKLASVSVRENDIAEYMPDILEAFEGLSREEIIQKAVS 422 Query: 426 AALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGD 485 ++ R D +P+ + + + R +G P+++R Sbjct: 423 TEFNRLLDYYRNA---GDINAKPREKVKGQAG-AKFTREKIVGKGRHGKGPKKDRLKGRK 478 Query: 486 MQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHF 545 Q + I GR D V IV + I SR IG I L S E+ K + VL+ Sbjct: 479 TQRFFINRGRLDKVNEGAIVRLVCENSGIKSRSIGQIDLNREFSFFEVEKSLAPRVLRGL 538 Query: 546 TRTRILNKPMNMQLLGDAQPHTGGERRGG 574 + K + ++ +P G ++ Sbjct: 539 ENATLDGKALQVRAADKQKPAEKGRKKAA 567 >UniRef50_B2UNH8 DEAD/DEAH box helicase domain protein n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UNH8_AKKM8 Length = 604 Score = 633 bits (1634), Expect = e-180, Method: Composition-based stats. Identities = 218/608 (35%), Positives = 319/608 (52%), Gaps = 27/608 (4%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 ++F+ LG+ ILEA+ LG++ PS IQ + IP + G D++G++ TGSGKT AF++P L Sbjct: 5 SSFSALGISPEILEAIEVLGFDTPSSIQEQAIPAAIGGADIVGLSHTGSGKTLAFAIPAL 64 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 + +DPE + Q+L L PTRELAVQ+ + + M GV+ V +YGG + QL ALR+G Sbjct: 65 ECIDPEERCVQVLALCPTRELAVQICREVDKLALFMDGVSAVPIYGGSSFRPQLDALRRG 124 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 Q VVGTPGR++D ++ G L L L L+LDEADEML MGF+ED+E I +PEG QT Sbjct: 125 VQFVVGTPGRVMDLMESGALRLDGLRMLILDEADEMLDMGFLEDIERIADAMPEGKQTLF 184 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSATM I R+ RFMKEP ++ I+ T P I Q Y+ V + E L R L+ Sbjct: 185 FSATMSPEISRLVSRFMKEPVQISIERPTLTVPTIEQVYYEVVFSSRIEVLSRLLDTGKI 244 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 ++F TK +V + L GY L+GDM Q +RE+ ++ + G L +L+ATD+A Sbjct: 245 KMGLVFANTKKVVDDVVDGLTARGYPVDRLHGDMPQMMRERVMDSFRKGSLRLLVATDIA 304 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARGLDV+ + VVN+++P D E YVHRIGRT RAGR G+A+ FV R+ L+ IER + Sbjct: 305 ARGLDVDDVDAVVNFELPRDPEDYVHRIGRTARAGRKGKAITFVGRRDFSLMSRIERFIG 364 Query: 366 LTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLA 425 + + + A + + R E + ++L+ A+L + E + Sbjct: 365 VKLTPEPVLTAVQVDQLRTESLVDDILERLKPD------AVLPEELKEVEAAPEAMAAAL 418 Query: 426 AALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGD 485 LL+ +P D P R R + + + GD Sbjct: 419 FDLLRERTHREVQPIPEDKPARRARRMPQTGEEAESPQKGDS------------WQHKGD 466 Query: 486 MQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHF 545 + GR G+ + I G N ++ +G+I++F HS IE+ + +L+ Sbjct: 467 TVTLFMNGGRMIGLRPKDIAGLFYNTVEMEKGAVGDIRIFPKHSLIEVDASVAPLLLEAL 526 Query: 546 TRTRILNKPMNMQLLGDAQPHTG---GERRGGG--RGFGGERREGGRNFSGERREGGRGD 600 + +N++ A ++G RR GG + GER R SG R G RG Sbjct: 527 ATATVCGYEVNVREDKGAPEYSGTPRSSRRNGGFRNSYRGERDRSDR--SGFR--GNRGG 582 Query: 601 GRRFSGER 608 R GER Sbjct: 583 FRSDRGER 590 >UniRef50_Q5L3G9 DEAD-box ATP-dependent RNA helicase cshA n=94 Tax=Firmicutes RepID=CSHA_GEOKA Length = 467 Score = 632 bits (1630), Expect = e-179, Method: Composition-based stats. Identities = 203/478 (42%), Positives = 297/478 (62%), Gaps = 15/478 (3%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 TTF +LGL +++A+ +G+E+ +PIQA+ IP L +DV+G AQTG+GKTAAF +P++ Sbjct: 2 TTFQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIV 61 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 + ++ + A Q LV+APTRELA+QV+E + ++ V V+ +YGGQ + Q+RAL++ Sbjct: 62 EKVNVKNSAVQALVVAPTRELAIQVSEELYKIGA-VKRVRVLPIYGGQDIERQIRALKKH 120 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 P ++VGTPGR++DH+ RGTL L + +VLDEADEML MGFIED+E I++ +P QT L Sbjct: 121 PHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQTLL 180 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSATMP+ IRRI RFM EP+ V++++ T P+I Q Y V +K + L R L+ + Sbjct: 181 FSATMPDPIRRIAERFMNEPELVKVKAKEMTVPNIQQYYLEVHEKKKFDILTRLLDIQAP 240 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 + AI+F RTK E+AEAL GY + ++GD++QA R L + K+G ++IL+ATDVA Sbjct: 241 ELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILVATDVA 300 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARGLD+ ++ V N+DIP D ESYVHRIGRTGRAG+ G A+ FV RE L +IERT K Sbjct: 301 ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHIERTTK 360 Query: 366 LTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLA 425 + ++ P + + + K+ +E+ +L Y+ ++ EE D T+ Sbjct: 361 RKMERMKPPTLDEALEGQQRIAIEKLLNVVETENLSFYKRAAEELL-----EEHDSVTIV 415 Query: 426 AALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDV 483 AA LKM E P + + + RG R D R R ++R + Sbjct: 416 AACLKMLTRE---------PDTTPVQLTEEPPLAVKREKKRGGRPDGSARSRTKKRRI 464 >UniRef50_Q65N62 DEAD-box ATP-dependent RNA helicase cshA n=135 Tax=Firmicutes RepID=CSHA_BACLD Length = 487 Score = 630 bits (1627), Expect = e-179, Method: Composition-based stats. Identities = 198/487 (40%), Positives = 302/487 (62%), Gaps = 10/487 (2%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 TF D L + + +A+ +G+E+ +PIQA+ IP L +DV+G AQTG+GKTAAF +P Sbjct: 1 MTITFQDFQLSSDLTKAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIP 60 Query: 64 LLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 L++ ++PE Q +V+APTRELA+QV+E + + R V+ +YGGQ Q+RAL+ Sbjct: 61 LVEKINPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRA-RVLPIYGGQDIGRQIRALK 119 Query: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183 + P I+VGTPGRLLDH+ R T+ L ++ +VLDEADEML MGFIED+E+I++ +P HQT Sbjct: 120 KNPHIIVGTPGRLLDHINRRTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPAEHQT 179 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAE 243 LFSATMP I+RI RFM P+ V++++ T +I Q Y V +K + L R L+ + Sbjct: 180 LLFSATMPAPIKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLEVHERKKFDTLTRLLDIQ 239 Query: 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 303 + AI+F RTK E+ EAL GY + ++GD+ QA R L + K G +++L+ATD Sbjct: 240 SPELAIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLVATD 299 Query: 304 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 363 VAARGLD+ ++ V N+D+P D ESYVHRIGRTGRAG+ G A+ F+ RE+ +LR IE+T Sbjct: 300 VAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDMLRAIEQT 359 Query: 364 MKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLET 423 K + ++ P + + + + +++ +E ++L+ Y +++ E+ D T Sbjct: 360 TKRKMDRMKAPTLDEAIEGQQQVTVDRIRTIIEENNLNFYMTAAAELL-----EDHDSVT 414 Query: 424 LAAALLKMAQGER---TLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRER 480 + AA +KM E + + +AP+R KR ++ R + R+ G RG ++ Sbjct: 415 VVAAAIKMMTKEPDNTPVRLTEEAPLRTKRN-KNHHHRSSKRRDGGGYRGKNNRSSYDKK 473 Query: 481 RDVGDMQ 487 R D + Sbjct: 474 RSSNDRR 480 >UniRef50_C6X450 Cold-shock DEAD-box protein A n=1 Tax=Flavobacteriaceae bacterium 3519-10 RepID=C6X450_FLAB3 Length = 571 Score = 630 bits (1626), Expect = e-179, Method: Composition-based stats. Identities = 197/576 (34%), Positives = 318/576 (55%), Gaps = 30/576 (5%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNG-RDVLGMAQTGSGKTAAFSLPLLQ 66 F + L IL+A+ +LG+E P+ IQ + IP + RD++ +AQTG+GKTAAFSLP+L Sbjct: 4 FTETNLSPEILKAIGELGFESPTEIQKQTIPFISTDIRDLIALAQTGTGKTAAFSLPILD 63 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 +D + Q LVL PTREL +Q+ + + ++SK+M + A+YGG Q+R+LR P Sbjct: 64 MIDDGSRKIQFLVLCPTRELCLQITKDIKNYSKYMNNIKTTAVYGGSSITDQIRSLRDKP 123 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 QI+VGTPGR++D + R LD S++ LVLDEADEML MGF +D+ETI+ + PE T LF Sbjct: 124 QIIVGTPGRVIDLINRKALDFSEIQWLVLDEADEMLSMGFKDDLETILRETPETKHTYLF 183 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SATM + + RI++ ++ P + + S + +I ++ V K EAL R ++A Sbjct: 184 SATMNKEVERISKSYLTAPHRISVGSINEVKKNIKHEFYVVGYRHKKEALKRLIDANPNQ 243 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 +I+F RT+ T EVA+ L +NGY + AL+GD++QA R+ +++ + +DIL+ATDVAA Sbjct: 244 YSILFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILVATDVAA 303 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RGLDV+ ++ V++Y +P D E +VHR GRTGRAG+ G ++ ++ E R L+ I+ + K+ Sbjct: 304 RGLDVDSLTHVIHYSLPDDPEVFVHRSGRTGRAGKDGISMSLIKPEESRKLKQIKMSTKI 363 Query: 367 TIPEVELPNAELLGKRRLEKFAAKV-QQQLESSDLDQYRALLSKIQPTAEGEELDLETLA 425 I E ++P + + K ++ K+ + LE + D AL+ + E E L Sbjct: 364 DIVEKKVPTGDAIIKAQVGGVFEKLFTEHLEFFNFDD--ALIPDL------SEFTKEELV 415 Query: 426 AALLKMAQGERTLIVPPDAPMRPKR------------------EFRDRDDRGPRDRNDRG 467 +L++ E + + ++ +R + Sbjct: 416 HKMLQLQLRELAMFYKDKNDLADQKFNADDRGGDSRRDRDRDRGRDRERGGDRGERREFS 475 Query: 468 PRGDREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSR--YIGNIKLF 525 G RE R R+ RR+ DM + +G+ D ++ ++ I S + IG+I++ Sbjct: 476 RDGGRESRDRKPRRNNTDMVRFFFNLGKKDQLKKMDMLEIINKSTAKSKKRPDIGDIEIL 535 Query: 526 ASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLG 561 S E+ K EV++ + K M ++ G Sbjct: 536 EKFSFFEVEKSFKDEVMKGMQSQKFKGKEMRAEIAG 571 >UniRef50_Q81IT9 DEAD-box ATP-dependent RNA helicase cshA n=84 Tax=cellular organisms RepID=CSHA_BACCR Length = 533 Score = 627 bits (1617), Expect = e-178, Method: Composition-based stats. Identities = 206/430 (47%), Positives = 288/430 (66%), Gaps = 6/430 (1%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 TTF +LGL +L+++ +G+E+ +PIQAE IPH L G+D++G AQTG+GKTAAF LPLL Sbjct: 2 TTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL 61 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 +D ++ Q +V+APTRELA+QV E + KH R V ++ +YGGQ + Q+RAL++ Sbjct: 62 DKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKR-VRILPIYGGQDINRQIRALKKH 120 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 P I+VGTPGR+LDH+ R TL L + +VLDEADEML MGFIED+E I+ +PE HQT L Sbjct: 121 PHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSATMP+ IRRI RFM EPQ +++++ T P+I Q Y V +K + L R L+ + Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSP 240 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 + AI+F RTK E++EAL GY + ++GD+ QA R L + K+G +++L+ATDVA Sbjct: 241 ELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVA 300 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARGLD+ ++ V N+DIP D ESYVHRIGRTGRAG+ G A+LFV RE L+NIERT K Sbjct: 301 ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTK 360 Query: 366 LTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLA 425 + ++ P + + + A K+Q +E+ +L Y+ + ++ EE D T+ Sbjct: 361 RKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEML-----EENDSVTVV 415 Query: 426 AALLKMAQGE 435 AA LKM E Sbjct: 416 AAALKMMTKE 425 >UniRef50_C0YHR5 ATP-dependent RNA helicase n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YHR5_9FLAO Length = 562 Score = 626 bits (1616), Expect = e-178, Method: Composition-based stats. Identities = 202/561 (36%), Positives = 321/561 (57%), Gaps = 9/561 (1%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNG-RDVLGMAQTGSGKTAAFSLPLLQ 66 F + L IL+A+ +LGYE P+ IQ + IP +L+ RD++ +AQTG+GKTAAFSLP+L Sbjct: 4 FTETNLSPDILKAIGELGYESPTEIQKQTIPFILSDIRDLIALAQTGTGKTAAFSLPILD 63 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 +D + Q+LVL PTREL +Q+++ + ++SK+M+ + A+YGG Q+R+L+ P Sbjct: 64 MIDDTSRKIQLLVLCPTRELCLQISKDIKNYSKYMKDIKTTAVYGGSSIVEQMRSLKDKP 123 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 QI+VGTPGR++D + R LD S + LVLDEADEML MGF +++ETI+++ PE QT LF Sbjct: 124 QIIVGTPGRVIDLINRKALDFSAIHWLVLDEADEMLSMGFKDELETILSETPETKQTFLF 183 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SATM + + RI++ ++ +P + + S + +I+ Y+ V +K EAL R ++A Sbjct: 184 SATMNKEVERISKNYLTKPHRISVGSINEVKKNITHEYYVVGYRQKKEALKRLIDANPNQ 243 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 +IIF RT+ T EVA+ L +NGY + AL+GD++QA R+ +++ + +DIL+ATDVAA Sbjct: 244 YSIIFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILVATDVAA 303 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RGLDV ++ V+++ +P D E +VHR GRTGRAG+ G ++ ++ E R L+ I+ K+ Sbjct: 304 RGLDVNSLTHVIHFSLPDDPEVFVHRSGRTGRAGKDGISMALIKPEESRKLKQIKSATKI 363 Query: 367 TIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAA 426 I E +P + + K ++ K+ E DL ++ L EEL + L Sbjct: 364 EIHERTIPTGDDIIKAQVGGVFEKL--LTEHEDLFEFDDSLIPDLSNFTKEELVHQLLQF 421 Query: 427 AL--LKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVG 484 L L + ++ +V R R RDR RG +R + RR Sbjct: 422 QLKDLALYYKDKHDLVEQKLSSRDDDYSRRDRRDRDRDRGRDRDRGRDRERGGKPRRRDE 481 Query: 485 DMQLYRIEVGRDDGVEVRHIVGAI--ANEGDISSR--YIGNIKLFASHSTIELPKGMPGE 540 +M + +G+ D ++ ++ I A G S + IG+I++ S E+ K Sbjct: 482 NMVRFFFNLGKKDHLKKLDVLDIINKATAGGKSKKRAEIGDIEILEKFSFFEVEKSFKDN 541 Query: 541 VLQHFTRTRILNKPMNMQLLG 561 VL + + K M ++ Sbjct: 542 VLSNIQSMKFKGKDMRAEVAN 562 >UniRef50_A7HKQ8 DEAD/DEAH box helicase domain protein n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=A7HKQ8_FERNB Length = 571 Score = 623 bits (1607), Expect = e-177, Method: Composition-based stats. Identities = 188/579 (32%), Positives = 291/579 (50%), Gaps = 31/579 (5%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLN-GRDVLGMAQTGSGKTAAFSLPLLQ 66 F D GL IL A+ GYEKP+ IQ +P+ L+ +D++ AQTG+GKTAAF +PLL+ Sbjct: 20 FEDFGLSEEILLAIQKKGYEKPTEIQKIVLPYALSTDKDLIAQAQTGTGKTAAFGIPLLE 79 Query: 67 NLDPELKA-PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 +D + + +++ PTRELA+Q+ E + K + V + LYGGQ + Q + L +G Sbjct: 80 RIDFKANKFVKAIIVTPTRELALQIFEELKSL-KGTKRVKITTLYGGQSLEKQFKDLEKG 138 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 IVVGTPGR++DHL R TLDLS + LVLDEAD ML MGF++DV I+ + E +T L Sbjct: 139 VDIVVGTPGRIIDHLNRDTLDLSHVEYLVLDEADRMLDMGFLDDVLEIIKRTGENKRTFL 198 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSATMP+ I I R+FMKE V T + Q Y+ V K L R ++ Sbjct: 199 FSATMPKEIVDIARKFMKEYIHVSTVKDELTTENAEQLYFEVDEKDKLPLLCRIIDMNPD 258 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 I+F +TK E+++ L GYN+ L+GD +Q RE+ L++ + +L IL+ TDVA Sbjct: 259 FYGIVFCQTKLEVDEISKKLLDLGYNADGLHGDYSQYQRERVLDKFRKKQLRILVTTDVA 318 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARG+D++ ++ V+NY +P D E YVHRIGRTGRAG+ G A+ FV + ++R K Sbjct: 319 ARGIDIDGLTHVINYSVPRDPEYYVHRIGRTGRAGKKGFAITFVTRDDYFHFARVKRFAK 378 Query: 366 LTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLA 425 I + +P E + R+LEK ++ + S+ + Y+ +I EE+ Sbjct: 379 AKIIKDSIPQVEDILNRQLEKLLDTLKNAPKVSN-ELYKRAAQQII-----EEMGPTEAV 432 Query: 426 AALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGD 485 LL ++ + R + +G ++ + Sbjct: 433 EMLLHTLIKDKIDV-----------------SRYGDVKPKNFSKGREQNFGDSNKNVDSG 475 Query: 486 MQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHF 545 + +G G++ + +V I+ + I N+K+F + S I++ + +L+ Sbjct: 476 SVRLFVNMGSSKGLDKKKLVEFISERTGVEPSNINNVKVFENFSFIDVSEFDAEVILKTL 535 Query: 546 TRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERRE 584 R N +R ER+ Sbjct: 536 NPKRGKN-----SRSKPLVERAREKRENRENRESKERKS 569 >UniRef50_B1V958 DEAD/DEAH box helicase-like n=4 Tax=Candidatus Phytoplasma RepID=B1V958_PHYAS Length = 564 Score = 622 bits (1605), Expect = e-176, Method: Composition-based stats. Identities = 190/562 (33%), Positives = 302/562 (53%), Gaps = 18/562 (3%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F L + +AL +L + + +PIQA IP ++ G DV+G AQTG+GKT AF +P+++ Sbjct: 5 FEQLPILEQTKKALQELNFIEATPIQALVIPEIIQGHDVIGQAQTGTGKTFAFGIPIIEK 64 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 +D +L Q L+L PTREL +QV E + ++ + + ++GG+ Y Q RAL P Sbjct: 65 IDYKLSKTQSLILCPTRELTLQVYEELKKLLRYYPQIRIAVVFGGESYTKQFRALESKPH 124 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 +++ TPGR++DH++RG +DLS L L LDEADEML+MGF E +ETI+ QIPE QT LFS Sbjct: 125 LIIATPGRVIDHIERGKIDLSALKILTLDEADEMLKMGFQEALETILKQIPEERQTVLFS 184 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 AT+P +I++I ++ K + +++ I Q Y+ V KN+ LVR L+ + + Sbjct: 185 ATLPPSIKQIASKYQKNTKILQVPVKKLAVNAIEQYYFLVKEFDKNKLLVRLLDLKRDYS 244 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 I+F TK E+ L+ G+ + A++GD+ Q R+ + + G++ ILIATDVAAR Sbjct: 245 TILFANTKKDVDEITSFLQDKGFLADAVHGDLKQNQRQYVMNNFRKGKIKILIATDVAAR 304 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 G+D+ I +VVNYD+P + E YVHRIGRTGRAG+ G A F+ R+ L+ +E +K Sbjct: 305 GIDISDIKMVVNYDLPHEDEVYVHRIGRTGRAGKKGLAYSFISPRKFSQLKKLEYYLKEK 364 Query: 368 IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQY-RALLSKIQPTAEGEELDLETLAA 426 + +E+P+ E + K+ LE F KV +E + + ++ K+ + E + Sbjct: 365 VKFLEIPSVEEIKKQILENFEQKVIDIIEKNSQENANNPMIEKLLQ-----KFSSEQIIQ 419 Query: 427 ALLKMAQ---GERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDR--------EDR 475 LL Q T I+PP P+ F + R R + Sbjct: 420 GLLTNIQPKAKNYTDIIPPRMTFTPRETFNNNSFGNRRFGEKRFQNPKFSSYNSYNSYNS 479 Query: 476 PRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPK 535 + D I +G+ D + ++ + +E I + IGNIK + E+P Sbjct: 480 YNSYSQKRNDFIEATINLGKKDNINPTVLIRLLKDEYQIYGKNIGNIKHLTHETIFEIPS 539 Query: 536 GMPGEVLQHFTRTRILNKPMNM 557 + +++ + R NK + + Sbjct: 540 RFWNQ-MKNKSDIRFQNKILVI 560 >UniRef50_C0AEG7 DEAD/DEAH box helicase domain protein (Fragment) n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0AEG7_9BACT Length = 606 Score = 622 bits (1604), Expect = e-176, Method: Composition-based stats. Identities = 216/609 (35%), Positives = 312/609 (51%), Gaps = 58/609 (9%) Query: 9 ADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNL 68 A+LGL +L+A++ +G+E+ SPIQA IP LL G DV+G + TGSGKTAAF+LP ++ + Sbjct: 1 AELGLSPELLKAVDKMGFEEASPIQAAVIPLLLAGSDVVGQSSTGSGKTAAFALPAIERV 60 Query: 69 DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQI 128 D +LKA Q+L+L PTRELAVQVAE + + RGV V +YGGQ Y+ Q RAL G Q+ Sbjct: 61 DTKLKAVQVLILCPTRELAVQVAEEVNKLASFKRGVMEVPIYGGQSYERQFRALAAGAQV 120 Query: 129 VVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSA 188 V+GTPGR++DH++RGTL L KLS ++LDE D ML MGF +D+E I+ +PE Q+ FSA Sbjct: 121 VIGTPGRVMDHMERGTLKLDKLSMVILDECDRMLDMGFRDDIEHILKSVPEQRQSLFFSA 180 Query: 189 TMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAA 248 TMP IR + RF+ P V+I++ + + P + Q Y+ V K E L R ++ DF Sbjct: 181 TMPREIRDMISRFIPNPAWVKIETQMQSAPQVDQVYFEVDRRSKLEVLTRLIDLNDFRYG 240 Query: 249 IIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARG 308 IIF TK E+ E L GY L+GD+ QA R +T+E+ K + LIATDVAARG Sbjct: 241 IIFCSTKIMVDELDENLHARGYACDRLHGDITQAQRTRTMEKFKRRGFEFLIATDVAARG 300 Query: 309 LDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTI 368 LDV+ + +V N+D+P D+E Y HRIGRTGRAGR G+A FV RE L+++ R +L I Sbjct: 301 LDVDDLEVVFNFDLPNDAEDYTHRIGRTGRAGRKGKAFTFVSGRELWKLQSMVRFARLDI 360 Query: 369 PEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAAL 428 +P+ + + + R F K++ L++ + ++ + + AAL Sbjct: 361 RRERVPSLDQVEEARENVFFEKLRATLDAKKFCPQDRFIDRLLE----QGYPSTDIIAAL 416 Query: 429 LKMAQGERTLIVP----------------------------------------------- 441 L + QG P Sbjct: 417 LHLMQGGGGGDKPAPSTVPAKSSARFAPPPAPPASPASPAFPEPSAPAASARPARSASRS 476 Query: 442 -----PDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERR--DVGDMQLYRIEVG 494 D P + E DD R D G ++ + R R VG Sbjct: 477 KPPREADIPDYTQGELPAGDDFADDARADAGSSRPKKAKFERAARTGREPGFTPVFFNVG 536 Query: 495 RDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKP 554 R + +VG +A + + +G I + H+ ++ V++ T RI + Sbjct: 537 RKQLITPADLVGKVAGVTRLPAAVVGAIDIHQRHTLADIADEHVDLVVKKLTGIRIKGES 596 Query: 555 MNMQLLGDA 563 + DA Sbjct: 597 LQPMRASDA 605 >UniRef50_Q04VV9 ATP-dependent RNA helicase (Superfamily II) n=4 Tax=Leptospira RepID=Q04VV9_LEPBJ Length = 513 Score = 621 bits (1603), Expect = e-176, Method: Composition-based stats. Identities = 183/478 (38%), Positives = 282/478 (58%), Gaps = 4/478 (0%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F++L L A I A+ ++G+E+ SPIQ+E IP +L G+D++G AQTG+GKTAAF++P ++ Sbjct: 6 FSELNLSAEIQNAILEMGFEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAIPAIEL 65 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 L+ E K Q L+L PTREL +QV+E K+ VV +YGGQ + QL+ALR+ PQ Sbjct: 66 LEVESKHLQALILCPTRELVIQVSEQFRKLMKYKGNFEVVPVYGGQEIERQLKALRKNPQ 125 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 IV+ TPGR++DH++RG++ L+ + +VLDEADEML MGF ED+E I+ P QT +FS Sbjct: 126 IVIATPGRMMDHMRRGSIRLNDIKIVVLDEADEMLDMGFREDMEFILKDTPIDRQTIMFS 185 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 ATM E I + +RF K PQ + + + P I Q Y+ + K EAL R +E + Sbjct: 186 ATMTEDILTLMKRFQKHPQIIDVTHQKLSAPKIEQIYYEIQENAKGEALARLIEYRNVKL 245 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 A++F TK V E L+ GY + AL+GD+NQ R++ + ++G ++IL+ATDVA R Sbjct: 246 ALVFCNTKAQVDTVVELLKSRGYFAEALHGDLNQKQRDKVMNGFRNGNIEILVATDVAGR 305 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 G+DV + V NYD+P D E YVHRIGRTGRAG+ G A F+ ++ L+ IER + Sbjct: 306 GIDVNNVEAVFNYDLPRDGEDYVHRIGRTGRAGKKGIAFSFIVGKQIYNLKKIERINGIK 365 Query: 368 IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAA 427 I ++P + L + ++ + +KV+ +++ + +Y + K+ G++ +AAA Sbjct: 366 IEAGKIPTLDDLEETKIHSYTSKVRSIVDAGHIGKYVNQVEKLM----GDDYTALDIAAA 421 Query: 428 LLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGD 485 L KM ++ ++ +R+ + R R R + + G Sbjct: 422 LFKMTILRDSVTFDDSVQFESNFKYEERNSFKKKPGKYRDRNFGRSGSGARTKSNPGS 479 >UniRef50_Q2FKY7 DEAD/DEAH box helicase-like n=1 Tax=Methanospirillum hungatei JF-1 RepID=Q2FKY7_METHJ Length = 531 Score = 621 bits (1603), Expect = e-176, Method: Composition-based stats. Identities = 210/566 (37%), Positives = 310/566 (54%), Gaps = 42/566 (7%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +F+DL L I++A+ D+GYE+P+PIQ E IP +L G DV G A TG+GKTAAF +P ++ Sbjct: 5 SFSDLQLSPGIIKAIRDIGYEEPTPIQQEVIPLILAGNDVAGQAYTGTGKTAAFGIPAIE 64 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 P + Q +VL P+RELAVQV + + H +G++++ +YGGQ + Q++AL +G Sbjct: 65 LCQPANRNVQTIVLCPSRELAVQVGTELNKLAMHKKGISILPVYGGQPIERQIKALSRGV 124 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 QI++GTPGR++DH+KR TL L +S +VLDEAD+ML MGF ED+E I++ IP+ QT + Sbjct: 125 QIIIGTPGRVIDHIKRKTLLLDAVSLVVLDEADQMLDMGFREDIEEILSHIPKERQTVIL 184 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SAT P I I+RRF K P +V++ T P I Q Y V K + L+R LE Sbjct: 185 SATFPPEILDISRRFQKNPIDVKMVHQELTVPQIEQYYIEVREPAKADTLIRVLEFYQPQ 244 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 IIF T+ A V+ AL+ G+ + L+G M QA R++ + + G+L+ILIATDVAA Sbjct: 245 RTIIFCNTQIAVDAVSSALKAEGFLADGLHGGMAQAQRDKVMNAFRKGQLEILIATDVAA 304 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RG+DVE I LV N+D P D E YVHRIGRT RAGR GRA+ FV RER LR++ R+ + Sbjct: 305 RGIDVEEIDLVCNFDFPQDDEYYVHRIGRTARAGRTGRAISFVSPRERYRLRDVRRSTRA 364 Query: 367 TIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAA 426 + +P +G ++ A +++ DL R ++ + E D LA Sbjct: 365 EPEPLPIPTLREIGGKKATTTLADADALMKTGDLTFCRPMIEEKL----AEGADPVALAT 420 Query: 427 ALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDM 486 +LL +A G T + +G+ Sbjct: 421 SLLMIAAGIATEKEDDL------------------------------------EKYLGEQ 444 Query: 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFT 546 + R+ GR DG+ VR I+ + N G IGNI++ + + I++P+ EV+ Sbjct: 445 AVVRLSAGRQDGILVRDILQIVRNSGRNIQNDIGNIRIGQTATYIDVPEQSVKEVIDVLN 504 Query: 547 RTRILNKPMNMQLLGDAQPHTGGERR 572 +I + + + +RR Sbjct: 505 GAQIG--RIRLVAKRGRKQSEIPKRR 528 >UniRef50_A6DIU5 Probable ATP dependent RNA helicase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DIU5_9BACT Length = 537 Score = 621 bits (1602), Expect = e-176, Method: Composition-based stats. Identities = 193/546 (35%), Positives = 288/546 (52%), Gaps = 30/546 (5%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLN-GRDVLGMAQTGSGKTAAFSLPLLQ 66 F LGL+ I + L G+++PSPIQ + IP LL+ D++G AQTG+GKTAAF LP++Q Sbjct: 4 FTALGLEPWITQCLEAKGFKEPSPIQEQAIPVLLSQDHDIIGQAQTGTGKTAAFGLPIVQ 63 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 ++P LK PQ L+L PTRELA+QV E + F K RG+ V LYGG Q RAL++G Sbjct: 64 KIEPGLKKPQALILCPTRELAIQVNEEIKSFCKG-RGITTVTLYGGAPIMDQKRALKKGV 122 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 +VV TPGR + ++ G L+L L LVLDEADEML MGF+EDVE ++ P+ +F Sbjct: 123 DLVVATPGRCIHFIEDGKLELDSLEYLVLDEADEMLNMGFVEDVEKVLKASPDDRTVLMF 182 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SATMP +++I +M ++ +S T I Q + + K AL R ++ E Sbjct: 183 SATMPPRLKKIAESYMHNSITIKAKSETMTMETIDQVVYEAYPENKFAALCRIMDLEKDF 242 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 IIF RTK +V+ L GY + ++GD+ Q RE+ L+R ++ + +LIATDVAA Sbjct: 243 YGIIFCRTKVEVEKVSAGLANEGYAADYIHGDVAQESRERLLKRFRNRNISLLIATDVAA 302 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RG+DV +S +VN+ +P ESYVHRIGRTGRAG+ G A+ + +ER + IE+ Sbjct: 303 RGIDVTDLSHIVNFSLPEQFESYVHRIGRTGRAGKTGTAITLITPKERSKMSFIEKKTGA 362 Query: 367 TIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEG-----EELDL 421 +LP E + K R++K + ++ + + A L ++ P E E+ Sbjct: 363 KTERRKLPFGEEMIKLRIQKLSKEL------AHFQENNAELEELAPIKEVAAQLLEDNSP 416 Query: 422 ETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERR 481 + ALL G + DA P + RN +G Sbjct: 417 VDIITALLSKIFGTKL-----DASNYPDINCSAAKKKSRDSRNFKGNTAS---------- 461 Query: 482 DVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEV 541 GD + G+ DG+ + ++ I+ + ++ R I N+K+F S + Sbjct: 462 --GDSKSLFFAKGKRDGMMPKKVISFISGKSKVAPRGIDNLKVFDKFSLFTTNANDAERI 519 Query: 542 LQHFTR 547 ++ R Sbjct: 520 IRSCNR 525 >UniRef50_C7RHZ9 DEAD/DEAH box helicase domain protein n=3 Tax=Anaerococcus RepID=C7RHZ9_ANAPD Length = 536 Score = 618 bits (1595), Expect = e-175, Method: Composition-based stats. Identities = 177/541 (32%), Positives = 292/541 (53%), Gaps = 23/541 (4%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F +L + IL A++DLGYEKPSPIQ E IPHLL G D++G +QTGSGKTAAF++P+++N Sbjct: 3 FNELNIGNEILRAIDDLGYEKPSPIQEESIPHLLEGNDLIGKSQTGSGKTAAFAIPIIEN 62 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 ++ Q L+L PTREL +QV++ + K+ + + ++++YGG Q+++L++G + Sbjct: 63 IEAN-GITQALILCPTRELCIQVSKEIEKLYKYKKEIKILSVYGGSHIVRQIKSLKKGVE 121 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 IVVGTPGRL+D ++R L L +L +VLDEADEM MGF +D++ I+ + QT FS Sbjct: 122 IVVGTPGRLMDLMRRKVLKLDQLKTVVLDEADEMFDMGFRDDMKFILDRTNPNRQTCFFS 181 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 ATM I+ ++ + P EV+I+S T I Q Y + K EAL+R LE + Sbjct: 182 ATMGPEIQEFSKLYQTNPYEVKIKSKEVTVDRIDQYYIKLKESMKEEALMRLLEIHKANL 241 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 AI+F TK + E+L + Y L+GD+ Q+ R+Q +++ ++ + IL+ATD+AAR Sbjct: 242 AIVFCNTKRKVDRLVESLTKKNYLVDGLHGDLKQSSRDQVMKKFRNKTIQILVATDIAAR 301 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 GLDV+ + +V NYD+P E YVHRIGRT RAG++G + + R+ LR IE K Sbjct: 302 GLDVDDVDIVFNYDLPQLDEYYVHRIGRTARAGKSGLSFSLISGRDNNRLRQIENYTKAN 361 Query: 368 IPEVELPNAELLGKRRLEKFAAKVQQQLE-SSDLDQYRALLSKIQPTAEGEELDLETLAA 426 I ++ +P + ++ + + +L+ + DL + + +L ++ + + L Sbjct: 362 IKQMPVPTLVQMDRQSDLRLIEDISSKLDKNEDLSREKDILIRLMEKGYDPFMICQVLLK 421 Query: 427 ALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDM 486 L + L + + + + D+ +M Sbjct: 422 DKLDINNNHEKLEGIDLKSEKKSKSKSNNKTKKKYDK---------------------EM 460 Query: 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFT 546 + G+ D I+ A+A + IG I++ ++S I++ K + ++ Sbjct: 461 TTLFMNRGKIDNFTKDKIIKALARMAKVPKDKIGQIRIQKTYSFIDIEKPEAFKAIRAID 520 Query: 547 R 547 Sbjct: 521 N 521 >UniRef50_Q2LY23 Superfamily II DNA and RNA helicases n=2 Tax=Bacteria RepID=Q2LY23_SYNAS Length = 572 Score = 615 bits (1587), Expect = e-174, Method: Composition-based stats. Identities = 187/581 (32%), Positives = 310/581 (53%), Gaps = 18/581 (3%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGR-DVLGMAQTGSGKTAAFSLPLL 65 TFA+ + I++ L+ LG+ +P+Q + IP +LN + D++G+AQTG+GKTAAF +PL+ Sbjct: 3 TFAEFEINTDIMKGLDGLGFSVMTPVQEKIIPIVLNRQTDLVGLAQTGTGKTAAFGIPLI 62 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 Q D LK Q LVL PTREL VQVA + ++++ + +V +YGG Q LR+G Sbjct: 63 QLTDTRLKRTQALVLCPTRELCVQVAGDLNLMGRYVQKLKIVPVYGGASIVSQTEELRKG 122 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 Q+VV TPGRL D ++RG +DLS +S +VLDEADEML+MGF +++ I+A P+ T L Sbjct: 123 AQVVVATPGRLHDLIRRGAVDLSGVSWVVLDEADEMLQMGFQDELNAILAVTPDSKNTLL 182 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSATMP + I +MK+P E+ + ++ Y+ V + +AL R + Sbjct: 183 FSATMPREVAAIAANYMKDPLEIIVGRRNAGAENVDHIYYVVSARHRYQALRRIADMNPE 242 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 AIIF RT+ T E+ + L +GY++ AL+GD++Q+ R+ + + + + +L+ATDVA Sbjct: 243 LYAIIFCRTRLETREIVDKLIEDGYSADALHGDLSQSQRDHVMHKFRSRNIRMLVATDVA 302 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARGLDV ++ V+NY +P +S Y HR GRTGRAG+ G ++ +E RE+ +R IER +K Sbjct: 303 ARGLDVNDLTHVINYSLPEESSGYTHRSGRTGRAGKKGISIALIETREKHKIRAIERCLK 362 Query: 366 LTIPEVELPNAELLGKRRLEKFAAKVQQ-QLESSDLDQYRALLSKIQPTAEGEELDLETL 424 E +P+ + KRRL V++ ++++ +D + +SK + + EEL + Sbjct: 363 KNFEEGRIPSGHEICKRRLLSHMEAVKKTEIDAEHIDPFLPAISKTLESLDREELIKRFV 422 Query: 425 AAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVG 484 + + R P ++ + R + R ++ Sbjct: 423 SMEFNRFLASYRNA---------PDLNTFEKTPPKKKTREAAAGKPYRLASRKK------ 467 Query: 485 DMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQH 544 I G+ DG+ + ++ +++ + IG I++ + S +E ++LQ Sbjct: 468 -FTPLFINAGKKDGISPKRLMRDLSDAAGMPDVRIGRIEVNNTTSLLEADSRFAPKILQA 526 Query: 545 FTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREG 585 I + + +++ E R +RR+G Sbjct: 527 LKSLTINGRYVAVEIDRKTAIRNRPENRRYDSSTAKDRRKG 567 >UniRef50_A9BJS7 DEAD/DEAH box helicase domain protein n=2 Tax=cellular organisms RepID=A9BJS7_PETMO Length = 530 Score = 613 bits (1583), Expect = e-174, Method: Composition-based stats. Identities = 189/562 (33%), Positives = 302/562 (53%), Gaps = 38/562 (6%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRD-VLGMAQTGSGKTAAFSLPL 64 T F +GL IL A++ GYE P+PIQ + IP LL+G++ V+G AQTG+GKTAAF +PL Sbjct: 2 TKFQQMGLSDNILSAIDRKGYEAPTPIQEKVIPLLLSGKNNVIGQAQTGTGKTAAFGIPL 61 Query: 65 LQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 ++ LD + Q LVL PTRELA+QV + K + +N++ +YGG Q+RAL++ Sbjct: 62 IERLDEKANDVQALVLTPTRELALQVCNEIDSL-KGNKRLNLLPVYGGVSIGNQIRALKR 120 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 +VVGTPGR++DHL RGTLD++K+ LV+DEADEML MGFIEDVE I+++ + Q Sbjct: 121 RVDLVVGTPGRIIDHLNRGTLDITKIKYLVIDEADEMLDMGFIEDVEMILSKTNKEKQIL 180 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVT---TRPDISQSYWTVWGMRKNEALVRFLE 241 +FSATMP+ I + R+ M + V T Q Y+ + K E L R ++ Sbjct: 181 MFSATMPQRIVTLARKHMGNFETVTTVQENKEDITVKKAKQIYYMISESNKIELLSRLID 240 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 + ++F +TK + E+A L + GY + ALNGD++Q RE+ ++R K R+ ILI+ Sbjct: 241 IDTNFYGLVFTKTKVQSEEIANELIKKGYEAEALNGDVSQNQRERIMDRFKSKRIKILIS 300 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 TDVAARG+D++ + V+NY +P + E+Y+HRIGRT RAG G A+ FV E R I+ Sbjct: 301 TDVAARGIDIDNLKYVINYSLPQNPENYIHRIGRTARAGNEGTAITFVTPTEYRRFMFIK 360 Query: 362 RTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDL 421 + K I E ++P A+ + ++EK +++ L + D+D +L++ E + + Sbjct: 361 HSSKAIIEEAKIPQAKDIVNAKVEKIKDEIKSNL-AKDIDPIYEILAE--TILEETDQEP 417 Query: 422 ETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERR 481 + A++LK G + K + +D R Sbjct: 418 SQIIASILKYFYGGILKEENYNKIKEVKNSSKSKDQR----------------------- 454 Query: 482 DVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEV 541 + +G + + + I E ++ + I +I++ S + +P + Sbjct: 455 -------LFVALGSSSKMTPKKLAEFIERETGVTIKKIKDIQVMEKFSFVTVPSEQAEAI 507 Query: 542 LQHFTRTRILNKPMNMQLLGDA 563 ++ F + +P+ +Q Sbjct: 508 IEIFKQKSNRKRPLVVQAKSKR 529 >UniRef50_Q26CN9 ATP-dependent RNA helicase n=2 Tax=cellular organisms RepID=Q26CN9_9BACT Length = 644 Score = 612 bits (1580), Expect = e-173, Method: Composition-based stats. Identities = 198/557 (35%), Positives = 309/557 (55%), Gaps = 18/557 (3%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLN-GRDVLGMAQTGSGKTAAFSLPLL 65 F LGL P+L L D+G+E P+ IQ + IP LL D +G+AQTG+GKTAAF LPLL Sbjct: 14 NFEVLGLSQPLLNGLADMGFENPTEIQQQSIPILLKHDGDFIGLAQTGTGKTAAFGLPLL 73 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 +D + Q L+LAPTRELA Q+ M SKH+ +NVV ++GG Q+R +R+G Sbjct: 74 DLIDVNSREVQALILAPTRELAQQICGQMEQMSKHLGKLNVVPVFGGANIMNQIRDIRRG 133 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 QI+V TPGRL+D +KR + L L +VLDEADEML MGF ED++ I+++ G L Sbjct: 134 AQIIVATPGRLMDLMKRREVKLDALKYMVLDEADEMLNMGFKEDIDFILSKSDTGRNIWL 193 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSATM I+RI +M +P+EVRI +I + K EAL RFL+ ++ Sbjct: 194 FSATMAREIKRIVDTYMVQPEEVRINPKNIVNKNIEHQSIQLKASDKIEALRRFLDYDED 253 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 ++F RTK T VA+ L NGY + AL+GDM+QA R+ ++R ++ L +LIATDVA Sbjct: 254 MFGVVFCRTKRDTQNVADQLNNNGYATEALHGDMSQAQRDAAMKRFRNKNLKLLIATDVA 313 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARG+DV+ I+ V+++ +P D E Y HR GRT RAG+ G ++ + + R L+ I + Sbjct: 314 ARGIDVDDITHVIHFALPDDPEFYTHRSGRTARAGKKGVSIALITRGDNRKLKFIASKLG 373 Query: 366 LTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLA 425 + + E+P E + ++R+ +++ + +Q + +D+ L++ +Q + ++ E + Sbjct: 374 IEFTQGEVPALEAITQKRISRWSENMIKQEINEKIDE--QLVNAVQESF--ADVTKEEII 429 Query: 426 AALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGD 485 A LL + + + + + RDRDD R+R R RG E Sbjct: 430 AKLL-TKEYNSIYKRNSISDLNDRSKGRDRDDSPRRERGKRTSRGTEEG----------- 477 Query: 486 MQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHF 545 M+ Y I +G D + ++G + + IS IG I + +HS +++ + + ++L Sbjct: 478 MKTYFINLGLKDDINKGALLGYVCDTTGISGAQIGRIVMDKTHSYMDVAEDVASQILT-L 536 Query: 546 TRTRILNKPMNMQLLGD 562 + + + Sbjct: 537 DGKQRNGHDLRVNEHKG 553 >UniRef50_D1N203 DEAD/DEAH box helicase domain protein n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N203_9BACT Length = 627 Score = 612 bits (1578), Expect = e-173, Method: Composition-based stats. Identities = 206/624 (33%), Positives = 309/624 (49%), Gaps = 33/624 (5%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGR-DVLGMAQTGSGKTAA 59 M++ + F LG+ +LEAL G+E PSPIQA IP LL G D++G AQTG+GKTAA Sbjct: 1 MSDLD-NFRKLGVSEEVLEALRAKGFEAPSPIQALTIPKLLEGAVDLIGQAQTGTGKTAA 59 Query: 60 FSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119 F +P+++ + K PQ L+L+PTREL++Q+AE + K R + + YGGQ ++QL Sbjct: 60 FGIPVIELCEGGGKKPQALILSPTRELSIQIAEELNSL-KGKRKLRIAPFYGGQMIEIQL 118 Query: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179 + LR G +V+GTPGR++D ++RG LD S+L VLDEADEML MGF+ED+E I+ Sbjct: 119 QRLRDGIDVVIGTPGRIMDLMERGKLDFSELKFAVLDEADEMLDMGFVEDIEKILGATNS 178 Query: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239 + +FSATMP I +I RFM+ + VR +S+ Q Y+ V K EAL R Sbjct: 179 DKRMLMFSATMPPEILKIAERFMRSYETVRAESAQLNTELTEQIYFEVRREDKFEALSRI 238 Query: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299 ++ E A++F RT+N E+ E L+ G+ AL+GD+ Q R + + + KD + IL Sbjct: 239 IDVEQDLYALVFCRTRNDVDELVEKLKLRGHRVEALHGDIAQMQRTRVINQFKDKKFKIL 298 Query: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359 IATDVAARG+DV ++ V+NY +P +E+YVHRIGRTGRAG+ G A+ FV E R L Sbjct: 299 IATDVAARGIDVNDLTHVINYSMPQGTETYVHRIGRTGRAGKNGTAITFVTPAEYRKLTM 358 Query: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEL 419 I+R I ELP + + + + F+ ++ + + + +Y ++ Sbjct: 359 IQREAHTEIRREELPQGRDIVEMKKQHFSEQLSEAISAGQHQEYLDFADELIEKTGNA-- 416 Query: 420 DLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRE 479 +AAL M Q + P + + R+ R+ + Sbjct: 417 -----SAALAAMLQLRFKGELLPQSYVEIGRK--------------------RDRKTWES 451 Query: 480 RRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPG 539 D I VG+ DG ++ I + I IG I + S + + Sbjct: 452 SADDHGSTRLFIGVGKLDGFGAVKMLDLIWEKARIKKYRIGKIDCYDRFSFVNVNFEDAE 511 Query: 540 EVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERREGGRG 599 ++ F R + + + G R R ERR R Sbjct: 512 AIIDAFRR---GGPKVQLAAERPSDEQNAGPAERPNRSVPVRRSREEHAERPERRTYTRR 568 Query: 600 DGRRFSGERREGRAPRRDDSTGRR 623 S ER R+ +T ++ Sbjct: 569 SAETASAERPMRRSKPETPATAKK 592 >UniRef50_C6BZ63 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BZ63_DESAD Length = 521 Score = 610 bits (1573), Expect = e-173, Method: Composition-based stats. Identities = 203/549 (36%), Positives = 300/549 (54%), Gaps = 36/549 (6%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNG-RDVLGMAQTGSGKTAAFSLPLLQ 66 F +LGL I+EAL G+ P+PIQ + IP LL+G +D++G AQTG+GKTAAF LP+++ Sbjct: 4 FRNLGLSDAIIEALEKKGFTAPTPIQEKTIPMLLSGEKDIVGQAQTGTGKTAAFGLPIIE 63 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 N+ Q +VL PTRELA+QVA+ + F + R V V +YGGQ QL+AL++G Sbjct: 64 NVREGAGHVQAIVLTPTRELAMQVADEIISF-RGSRKVFVATVYGGQPMLPQLKALKRGA 122 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 IVVGTPGR+LDH++R TLDLS+++ VLDEADEM MGF+E+V IM E +T LF Sbjct: 123 DIVVGTPGRVLDHIRRKTLDLSQINNFVLDEADEMCNMGFLEEVSEIMENAGEDRRTLLF 182 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SATMP + I ++FM + V ++ P + V + EAL R ++A+ Sbjct: 183 SATMPREVMNIAKKFMGDYDVVSVKREKDEAPLTELIFHEVNERDRFEALCRVVDAQPEF 242 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 ++F RT+ VA L GY + ++GD++QA RE L R + R IL+ATDVAA Sbjct: 243 YGLVFCRTRADADRVAGTLAERGYPAEPIHGDLSQARREDILMRFRKRRCKILVATDVAA 302 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RG+DV +S VVN+ +P D +S+VHR+GRTGRAG+ G A+ + RE LR I + KL Sbjct: 303 RGIDVPDLSHVVNFALPQDPQSFVHRVGRTGRAGKKGVAVTLITPREFGKLRYITKITKL 362 Query: 367 TIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAA 426 + + LP + + + + A++ + +E+ Y L ++ E +D A Sbjct: 363 RVDKKPLPTIDQVIDVKKSRMGAELSEIVEAGKHLSYLDLAHELL-----EGVDPIEAVA 417 Query: 427 ALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDM 486 ALLK +QG + KR +R ++ G GP +R Sbjct: 418 ALLKHSQGG----------VLDKRSYRKIEECG-------GPAANRGR------------ 448 Query: 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFT 546 + +GR G+ R +V I I+ I ++K+ ST +P G V++ Sbjct: 449 VRFTAHIGRAHGMTPRKLVDMICRRARINPVRIQHVKIQGRQSTFTVPAGDSDNVMRAVN 508 Query: 547 RTRILNKPM 555 R +P+ Sbjct: 509 RASKNERPL 517 >UniRef50_D0JAM0 ATP-dependent RNA helicase n=2 Tax=Blattabacterium RepID=D0JAM0_BLASB Length = 551 Score = 607 bits (1567), Expect = e-172, Method: Composition-based stats. Identities = 179/560 (31%), Positives = 304/560 (54%), Gaps = 15/560 (2%) Query: 4 FETTFADLGL-KAPILEALNDLGYEKPSPIQAECIPHLLNG-RDVLGMAQTGSGKTAAFS 61 + TF + IL+AL +G++ P+ IQ + IP LL+ RDV+ +AQTG+GKTAAF Sbjct: 1 MKKTFKEYNFFNKNILKALEAIGFQYPTTIQEKVIPFLLSSERDVIALAQTGTGKTAAFG 60 Query: 62 LPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 LP++Q ++ +L PQ +L PTREL VQ+ FSK + + +++LYGG D Q+++ Sbjct: 61 LPIIQKVNFDLSIPQAFILCPTRELCVQITRDFYRFSKFLSTIKIISLYGGVSIDSQIKS 120 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 L+ I++GTPGR++D +KR L L K+ L+LDEADEML MGF E+++ I+ +P+ Sbjct: 121 LQNKTHIIIGTPGRIIDLIKRKKLHLEKIKYLILDEADEMLNMGFKEELDYIVKMLPKNR 180 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWG-MRKNEALVRFL 240 Q+ LFSATM + + I R ++ +P E+ + Y+ V +K AL R + Sbjct: 181 QSLLFSATMSKYMNAIARTYLTDPVEIIAGQKNIVSDGVKHIYYMVGHLNKKYSALKRIV 240 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 + IIF TK T E+AE L ++GYN+ AL GD++Q RE + R ++ L L+ Sbjct: 241 DINPGIYGIIFCETKKETKEIAEYLIKDGYNADALYGDLSQTQRESVMNRFRNKNLQFLV 300 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATDVAARGLDV I+ V+NY++P +S+ Y+HR GRTGRAG +G ++ + ++E R L+ Sbjct: 301 ATDVAARGLDVHNITHVINYNLPKESDIYIHRSGRTGRAGNSGISVCIIHSKETRNLKEF 360 Query: 361 ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDL-DQYRALLSKIQPTAEGEEL 419 E+ + + V +PN + + +++L F KV++ + L +Q+ + K + EEL Sbjct: 361 EKRIGKSFERVMVPNGKEICEKQLLYFIEKVKKVVVDEKLMNQFLPEIQKNLEFFDKEEL 420 Query: 420 DLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRE 479 + + +++ ++ + R + +E + Sbjct: 421 IKRFSWIEFNRFISSYKNSKDINPIYTPIYTRKTFMNNKFTKNISSRTKKFRKESFSK-- 478 Query: 480 RRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPG 539 + G D + ++ I + S +IG+I++ ++ S E+ K Sbjct: 479 ---------LFLNRGSKDNLTKLGLINLINQAANNSRIHIGHIEILSNSSLFEVEKRYRN 529 Query: 540 EVLQHFTRTRILNKPMNMQL 559 ++L +R L +P+++++ Sbjct: 530 KILIGMSRINYLGRPLSIEI 549 >UniRef50_C2ME86 ATP-dependent RNA helicase, dead/deah box family n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2ME86_9PORP Length = 553 Score = 602 bits (1553), Expect = e-170, Method: Composition-based stats. Identities = 192/559 (34%), Positives = 299/559 (53%), Gaps = 9/559 (1%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGR-DVLGMAQTGSGKTAAFSLPLL 65 TF L L +L A DLG+ +P P+Q E IP+L R D++ +++TGSGKTAA+ LPLL Sbjct: 2 TFDTLDLSPELLRATTDLGFSEPMPVQQEVIPYLSTHRGDLIALSKTGSGKTAAYGLPLL 61 Query: 66 QNL-DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 + + + AP L+L PTRELA+QV + +K+ ++ALYGG + Q+R L + Sbjct: 62 ERIIQAKGSAPCGLILTPTRELAIQVQSDLVALAKYTSVRQILALYGGASIEEQIRQLAK 121 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 G I+V TPGRL D ++R + L K+S +VLDEAD ML MGF D++ I+ +P+ + Sbjct: 122 GYHIIVATPGRLCDLIRRKAVKLRKVSVVVLDEADVMLDMGFQRDLQEILQAVPQQVEHW 181 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 LFSATM +R I ++ + EV+I + DI Y V K AL R ++ Sbjct: 182 LFSATMSREVREIADNYISDAHEVQIGALNKANADIKHLYVAVPARHKYAALKRVVDYYP 241 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 IIF RT+ T E+AE L R+GYN+ AL+GD++QA R+ + R + L +L+ATDV Sbjct: 242 NIYGIIFCRTRAETKEIAEWLIRDGYNADALHGDLSQAQRDMVMNRFRIRNLQLLVATDV 301 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 AARGLDV+ ++ V++Y +P D +SY HR GRT RAG+ G ++ R+ + +R IE+ Sbjct: 302 AARGLDVDDVTHVLHYGLPADPDSYTHRSGRTARAGKTGLSIAICHLRDSKQIRIIEQHA 361 Query: 365 KLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETL 424 + I + LP+ + + K++L A +++ + QY LL+ I L E + Sbjct: 362 GIRIESMPLPSGQEICKKQLFALATRIEYADSNEHGTQYDELLNAIVQKL--AWLPPEEI 419 Query: 425 AAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVG 484 +L + + +R + + P +E + P+ R P R+ +R R D+ Sbjct: 420 IRRVLTL-EADRIMRYYANTPDLSAQELATEE---PKYRTKGSPEEHRKAPKKRSRTDLP 475 Query: 485 DMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQH 544 M RI +G+ D + ++ I N IG I L S+S E+ V Sbjct: 476 PMTSLRINLGKRDKLYPNRLLELI-NRTLPYKITIGKIDLSPSYSYFEVASEWAETVAAA 534 Query: 545 FTRTRILNKPMNMQLLGDA 563 + +P+ + + D Sbjct: 535 LSEEEYNGRPIRVTIQKDR 553 >UniRef50_C8PQM8 DEAD/DEAH box helicase n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PQM8_9SPIO Length = 646 Score = 601 bits (1551), Expect = e-170, Method: Composition-based stats. Identities = 209/636 (32%), Positives = 325/636 (51%), Gaps = 36/636 (5%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNG-RDVLGMAQTGSGKTAAFSL 62 + +F DLGL +L A+ G+E+P+PIQ IP LLNG +V+ A+TG+GKTAA+ L Sbjct: 16 MDISFRDLGLDESVLNAVAAKGFEEPTPIQVLAIPRLLNGDANVIAKARTGTGKTAAYGL 75 Query: 63 PLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 PL+Q L + P+ LVL PTRELA+QVA + F + + +YGG QLR L Sbjct: 76 PLVQELREPREKPRALVLVPTRELALQVASEIESFKEGTHP-RITTVYGGASIVEQLRNL 134 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 ++G +IV GTPGR++DHL+RG+L+L + +LDEADEML MGFIED+ETI + + Sbjct: 135 KRGCEIVAGTPGRVIDHLERGSLNLDSIEYFILDEADEMLNMGFIEDIETIFKKANPDSR 194 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 +FSATMP+ I +I FM E + V ++S P Q +W V K+EALVR ++ Sbjct: 195 VLMFSATMPKQILKIAADFMGEYEIVEEEASEEPLPLTEQFFWMVREEDKSEALVRLIDT 254 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 + ++F +TK VA+ L+ Y +AAL+GD+ Q RE+ L R + G+ IL+AT Sbjct: 255 AENFYGLVFCQTKVDADAVAKELDERHYEAAALHGDIPQGQREKILSRFRAGKTRILVAT 314 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 DVAARG+D+E I+ VVNY IP D +Y HRIGRTGRAG G A+ F+ ERR + + R Sbjct: 315 DVAARGIDIEGITHVVNYSIPYDGPTYTHRIGRTGRAGAKGTAVSFIRPNERRRIDYLRR 374 Query: 363 TMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQ-----YRALLSKIQPTAEGE 417 + + E ++P+ E + ++ ++ + +++QL++ + + L ++ + Sbjct: 375 HARGELLEGKIPSIEKVLAQKQDRLFSDLRRQLDTVQAEHTVNKSFIELARELLAGNKAS 434 Query: 418 ELDLETLAA-----ALLKMAQGERTLIVPPDAPMRPKREFRDRD-------------DRG 459 E AA A+ A + + +A + + + Sbjct: 435 LAATEETAADGTDTAVANTANVDEAVAFGAEAAVSGVKHIDSAELLAAVLQLHYGSVLSA 494 Query: 460 PRDRNDRGPRGDREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYI 519 RN + PR + +R + + + +GR DG R + + I + Sbjct: 495 SHYRNIKIPRSEE----KRGKPSGENTVRLYVGLGRKDGTSKRSLAQFFSTLLSIPEHAV 550 Query: 520 GNIKLFASHSTIELPKGMPGEVLQ------HFTRTRILNKPMNMQLLGDAQPHTGGERRG 573 I+LF S +LP E L+ + I K N+ +AQP ++ Sbjct: 551 DRIELFDRFSLADLPADAAHEALRLSKKRANMPHIHIDTKSDNVT-DKNAQPAGSAKKSS 609 Query: 574 GGRGFGGERREGGRNFSGERREGGRGDGRRFSGERR 609 + G RRE R++ G + ++R Sbjct: 610 SRKLREGNRREAFFREKDTRKKHPLSAGSAAAYKKR 645 >UniRef50_C7NBE3 DEAD/DEAH box helicase domain protein n=3 Tax=Leptotrichia RepID=C7NBE3_LEPBD Length = 571 Score = 598 bits (1543), Expect = e-169, Method: Composition-based stats. Identities = 194/579 (33%), Positives = 305/579 (52%), Gaps = 50/579 (8%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGR-DVLGMAQTGSGKTAAFSLPLLQ 66 F D GL +L AL+ G+E+PS IQ +P LL R ++G AQTG+GKTAAF +P+L+ Sbjct: 4 FEDFGLSTEMLNALSKKGFEEPSEIQKLVVPELLKERTHLIGQAQTGTGKTAAFGIPILE 63 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 +D + K + L+LAPTRELA QV++ + K + + V+A+YGG + Q++ L+ G Sbjct: 64 TIDAD-KTVRALILAPTRELANQVSDEIYSL-KGEKDIKVLAVYGGASIENQIKRLKAGV 121 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 IVVGTPGR++D + + L ++ L VLDEADEML MGF+ED+E I+ + + + F Sbjct: 122 DIVVGTPGRVMDLINKKVLKVNGLDYFVLDEADEMLNMGFLEDIEEILEKTNDEKKMLFF 181 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SAT+P+AI I +RFM E + ++++ T Q Y+ V K EAL R L+ E Sbjct: 182 SATIPKAILAIAKRFMPEHKLLKVEKKELTTNLTEQIYYEVKQEDKFEALCRVLDYEQNF 241 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 I+F RTK+ +V L+ Y++ ++GD+ QALR++ L+ K L IL+ATDVAA Sbjct: 242 YGIVFCRTKSEVDDVTNKLKARNYDAECIHGDITQALRQKALDLFKKQILTILVATDVAA 301 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RG+DV ++ V+NY IP ++ESYVHRIGRTGRAG G A+ FV RE L I+R K Sbjct: 302 RGIDVSNLTHVINYSIPQEAESYVHRIGRTGRAGHKGIAITFVTPREASKLAQIKRVTKT 361 Query: 367 TIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAA 426 I ++PN E + + + E A V + ++ SD + Y L ++ E D + A Sbjct: 362 DIKREDIPNVEEILEAKKEALVAYVDEIIKESDFNAYEELAQRLI-----EGRDARQVLA 416 Query: 427 ALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDM 486 ++L+ + L + K + D+ Sbjct: 417 SVLRHVYEDEFLPDNYNEIADVKVKINDK------------------------------- 445 Query: 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFT 546 I +G DG V ++ + + R + ++K+ +S I +P +++ Sbjct: 446 TRLFIALGSKDGYNVGRLLDLLNKKARTPGRKVKDVKIMDKYSFITVPLQEAEYIMRALN 505 Query: 547 RTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREG 585 + KP+ ++ ++ G G G+++ G Sbjct: 506 SKK-DAKPL-VEEATGSR---------NGGGEKGDKKSG 533 >UniRef50_D1B4W7 DEAD/DEAH box helicase domain protein n=2 Tax=Bacteria RepID=D1B4W7_SULD5 Length = 583 Score = 596 bits (1538), Expect = e-169, Method: Composition-based stats. Identities = 205/633 (32%), Positives = 296/633 (46%), Gaps = 66/633 (10%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 TF GL IL+A+N+ G+ +PSP+QAE IP +L G D++ AQTG+GKTAAF LP + Sbjct: 3 TFESFGLHQDILKAINEAGFTEPSPVQAEAIPLVLQGHDIVAQAQTGTGKTAAFGLPTMS 62 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 +D Q+LV+ PTRELA QV++ + + G+ V +YGG Y Q+ + +G Sbjct: 63 MIDANQNRVQLLVITPTRELATQVSDELYSLGRFC-GIKTVTIYGGSSYSRQIGLIEKGA 121 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 ++V TPGR+LD LK G L +VLDEADEML MGF+ED+E I +P+ QT LF Sbjct: 122 SVIVATPGRMLDLLKNGRLPGFAPKMVVLDEADEMLDMGFLEDIEEIFTYLPKERQTLLF 181 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSS-VTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 SATMPE I+R+ + + EP+ V I TT DI Q Y+ + +++A++R L+A + Sbjct: 182 SATMPEPIKRLASKILHEPKFVSITPKDHTTNEDIEQLYYVINEYERDDAMIRLLDALEP 241 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 + +I+F RTK ++ L GY + L+GDM Q RE ++ + +++IL+ATDVA Sbjct: 242 EKSIVFCRTKKEVDRLSTQLMAVGYAAKGLHGDMEQNQRESVIKAFRSSQIEILVATDVA 301 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARGL+V IS V NY +P D ESYVHRIGRTGRAG+ G A+ V E ++ I + + Sbjct: 302 ARGLNVADISHVFNYHMPFDPESYVHRIGRTGRAGKKGTAITLVTPIEFHSMQRIGKKVG 361 Query: 366 LTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLA 425 I +PN + + +L K A ++ + + + A+L EE+D+ +A Sbjct: 362 SKIEHRIVPNLRDVKENKLIKIADDIKNAELNENASKLLAILE--------EEMDMSQIA 413 Query: 426 AALLKMAQGERTLIVPPDA-------PMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRR 478 LL E T + P K + RG R G R Sbjct: 414 LKLLSNLLKENTPVGPDKIGLDKKTLESVVKNIEERENSRGGRSGYRGNSGGRSSGGYRG 473 Query: 479 ERRDVGDMQLYR-IEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM 537 D YR G DG G Sbjct: 474 SSSGSRDGGSYRGTSSGSRDG-------------GGYKG--------------------- 499 Query: 538 PGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGG-----RNFSGE 592 + R + GD+ P G R+GG R+ Sbjct: 500 --------SNPRDAGSRDSRPPRGDSAPRGESRNPFAKEGSSTGSRDGGGYKGNRDTDSR 551 Query: 593 RREGGRGDGRRFSGERREGRAPRRDDSTGRRRF 625 R D R + GRAP+ ++ Sbjct: 552 PPRAPRTD-RPSAPRSDAGRAPKTAPRNAYKKD 583 >UniRef50_D2LXV0 DEAD/DEAH box helicase domain protein n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LXV0_BACS4 Length = 500 Score = 592 bits (1528), Expect = e-167, Method: Composition-based stats. Identities = 187/482 (38%), Positives = 287/482 (59%), Gaps = 16/482 (3%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F DL ++ I+EA+ +G+E+ +PIQ + IP G+D++G AQTG+GKT AF +P ++ Sbjct: 4 FKDLNIQPSIVEAIEKMGFEETTPIQEKVIPLGKEGQDIIGQAQTGTGKTVAFGIPCVEQ 63 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 + E K PQ LVL PTRELA+QVAE + + ++G+ + +YGGQ Q+ AL++ PQ Sbjct: 64 VVVEEKHPQALVLTPTRELAIQVAEELNKLGQ-VKGIKALPIYGGQEITRQITALKKRPQ 122 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 I+V TPGR +DH++R T+ L +VLDEADEML MGFIED+ETI+ ++P QT LFS Sbjct: 123 IIVATPGRYMDHMRRKTIRPEFLKIVVLDEADEMLSMGFIEDIETILQEVPGERQTLLFS 182 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 ATMP ++ I RFM +P + +++ T +I Q Y + K + L L+ E + Sbjct: 183 ATMPPKLKTIADRFMNKPVSIAVKAKQLTVENIEQRYIALSEKEKFDTLCNLLDMETPEL 242 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 AIIF RTK E+ E+L G+ L+GDM Q R+Q + + K G +D+++ATDVAAR Sbjct: 243 AIIFGRTKRRVDELTESLSIRGFAVEGLHGDMKQERRDQVIRKFKRGSIDVMVATDVAAR 302 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 GLDV +S V+N+D+P DSESYVHRIGRTGRAG+ G + FV ++E+ LR IE + + Sbjct: 303 GLDVNDVSHVINFDLPQDSESYVHRIGRTGRAGKKGISYSFVTHKEKDHLRYIEESTRQK 362 Query: 368 IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAA 427 + +V+ P + R ++ ++++ + ++ Q ++ EE D L +A Sbjct: 363 MKQVDAPTLADAMRGRHKQAVNELKKAVNNAASKQLTGEAKQLL-----EEFDPVVLVSA 417 Query: 428 LLKMAQGE---RTLIVPPDAPMRP-------KREFRDRDDRGPRDRNDRGPRGDREDRPR 477 L+M E + + + +AP+R R + +DR G R + + R Sbjct: 418 ALQMVTKEPSKKQVKITGEAPVRSKKRPSGGGGGGRSGGGKRRKDRGTGGARINAKKRTS 477 Query: 478 RE 479 ++ Sbjct: 478 KQ 479 >UniRef50_Q7NHM7 Gll2508 protein n=1 Tax=Gloeobacter violaceus RepID=Q7NHM7_GLOVI Length = 437 Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 209/432 (48%), Positives = 290/432 (67%), Gaps = 2/432 (0%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 T F+ LGL +++AL++LG+E+P+PIQ + IP LL+GRD+L AQTG+GKTAAF LP Sbjct: 1 MATAFSALGLSESVVKALDELGFEQPTPIQLKSIPFLLDGRDLLAQAQTGTGKTAAFGLP 60 Query: 64 LLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 L+ DP+ Q LVLAPTRELAVQV EA+ +SKH GV V+ +YGGQ D Q+R LR Sbjct: 61 LVDRSDPQDARVQALVLAPTRELAVQVCEAIHTYSKH-SGVRVLPIYGGQPIDRQMRRLR 119 Query: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183 G QIVVGTPGR+LD ++RG+LDLS L LVLDEAD+ML MGFIE+V+TI+ P Q Sbjct: 120 AGAQIVVGTPGRVLDLMRRGSLDLSALRTLVLDEADQMLDMGFIEEVQTILDAAPPERQL 179 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAE 243 FSAT+P +IR++ R ++ P + + + P I+Q + V + +AL R L AE Sbjct: 180 VFFSATLPASIRKLAARHLRTPMTLTMPAEERDTPAIAQRVYFVNFKNRAQALTRVLAAE 239 Query: 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 303 D +A+IF RTK A E+AE L+ +G+ + AL+GD+NQ+ RE L R + +L++++ATD Sbjct: 240 DPASALIFTRTKQAADELAEQLQDDGHRAEALHGDLNQSAREAVLGRFRRQQLNVVVATD 299 Query: 304 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 363 VAARGLD+ +S V+NYD+P D ESY+HRIGRTGRAGR G A+ F +R LR IER Sbjct: 300 VAARGLDIADLSHVINYDMPQDGESYIHRIGRTGRAGRTGVAISFALPTDRYRLRLIERA 359 Query: 364 MKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLET 423 T+ ++P+A + RR E+ ++++QL++ + D L ++ EE DL Sbjct: 360 TGSTLVPAKIPSAGEIQVRRTERLVEQLRRQLQADESDPSLVLYREVVGQLR-EEFDLGD 418 Query: 424 LAAALLKMAQGE 435 +AA LK+AQ Sbjct: 419 IAATFLKLAQQR 430 >UniRef50_D1U888 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U888_9DELT Length = 551 Score = 592 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 194/596 (32%), Positives = 290/596 (48%), Gaps = 47/596 (7%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGR-DVLGMAQTGSGKTAAFSLPL 64 T F +LGL L AL G+ P+PIQ IP LL G D++G AQTG+GKTAAF LP+ Sbjct: 2 TDFKELGLSEETLAALESKGFTCPTPIQERTIPLLLQGAVDIVGQAQTGTGKTAAFGLPI 61 Query: 65 LQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 ++ K Q LVL PTRELA+QVA+ + K + + V+ +YGGQ +QL+AL+ Sbjct: 62 IETAVENAKRVQALVLTPTRELAIQVADEINSL-KGKKRIRVLPVYGGQAIHMQLKALKS 120 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 G +VVGTPGR++DHLKRGTL L +L VLDEADEM MGF++DV I+ +T Sbjct: 121 GVDVVVGTPGRIMDHLKRGTLHLDELDFFVLDEADEMCNMGFVDDVREILKSANTDRRTL 180 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 LFSATMP + RI + FM + + + +++ P Q + V + EAL R ++AE Sbjct: 181 LFSATMPHEVMRIAKEFMGDYELITVKAEKNDIPLTKQVFHEVADSDRFEALCRVVDAEP 240 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 ++F RT+ VA L GY + ++GD++QA RE+ L R K + IL+ATDV Sbjct: 241 DFYGLVFTRTRADADRVASRLTERGYPAEPIHGDLSQARREEILGRFKKRLVTILVATDV 300 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 AARG+DV ++ VVN+ +P D +++VHR GRTGRAG+ G A+ + E R L I ++ Sbjct: 301 AARGIDVPDLTHVVNFALPQDPQTFVHRTGRTGRAGKEGVAISLIAPSEFRRLMFITKSS 360 Query: 365 KLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETL 424 + I + +LP + + + + ++ Y + + E + E + Sbjct: 361 GIDITKAKLPCIHDVIYSKKSRMVDGLDGIIQEEAHTPYLPMARDLL-----EGREPEDV 415 Query: 425 AAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVG 484 AALLK A G+ + R R D Sbjct: 416 VAALLKHAFGDELVESSYREINTVTAANRGRAD--------------------------- 448 Query: 485 DMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQH 544 +GR DG+ + V I+ I I ++++ +T +P V+ Sbjct: 449 ----LVCSLGRVDGMNPKDFVDFISQAARIKPWSIQHVRVQGERTTFTVPGPEAELVVS- 503 Query: 545 FTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERREGGRGD 600 R+L++ + P RR + G ++ R D Sbjct: 504 ----RVLSRDGRPLVSQGDSPKKPPYRRDYPKKGAP----GPGKHPFKKPYKPRKD 551 >UniRef50_Q0W8H7 ATP-dependent RNA helicase n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W8H7_UNCMA Length = 497 Score = 590 bits (1523), Expect = e-167, Method: Composition-based stats. Identities = 189/486 (38%), Positives = 290/486 (59%), Gaps = 11/486 (2%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 F +L L I+ A++++G+E+ +PIQ + IP + G+D++G A+TG+GKTAAF +P++ Sbjct: 2 VKFTELNLTPSIVRAVHEMGFEEATPIQEQAIPLAMEGKDLIGQARTGTGKTAAFGIPMV 61 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 + + P K Q LV+ PTRELAVQVAE +T K +RG+ VA+YGGQ + Q++AL + Sbjct: 62 EAIRPTSKGVQGLVVVPTRELAVQVAEELTRIGK-VRGIRSVAIYGGQDFRSQVKALEEL 120 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 P IVVGTPGRLL+H++R + S + VLDEAD+ML MGFI++ E I+ ++PE QT L Sbjct: 121 PHIVVGTPGRLLEHMRREYVRTSDIRIAVLDEADKMLDMGFIDEAEKILKKLPERRQTLL 180 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSAT+ ++ + R+++K+P+ + + T P Q Y + +K EAL R L+ E Sbjct: 181 FSATLSPPVQMLARKYLKDPELIEFEEEGITVPTTVQYYIEMPEKQKFEALTRLLDQEKP 240 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 + AI+FV T+ E+A+AL GY++ L+GD+ Q RE TL++ K G + IL+ATDVA Sbjct: 241 ELAIVFVATRIRVGELAKALVERGYHALGLHGDLLQYQRENTLDKFKAGEVSILVATDVA 300 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARGLD++ ++ V N+DIP D +SYVHRIGRTGRAG AG A FV +++ L IE+ + Sbjct: 301 ARGLDIQGVTHVYNFDIPRDPDSYVHRIGRTGRAGNAGTATTFVTPKDKTALEAIEQAID 360 Query: 366 LTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLA 425 I P ++ +E K++ ++E DL YR + + + LA Sbjct: 361 HQITSKPAPGGAESTEKNIEAVIEKIRGEIEIRDLSFYRDYAESLLNSGD----PATILA 416 Query: 426 AALLKMAQGER------TLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRE 479 AAL +++ E T I P AP R + + P+ + G +++ R++ Sbjct: 417 AALRILSKAEEKPQIRLTEIPEPVAPDRKAEKGHGKGTGHPKKGSYSKGYGHKDEGDRKK 476 Query: 480 RRDVGD 485 Sbjct: 477 AGAQKP 482 >UniRef50_Q8YXJ0 ATP-dependent RNA helicase n=24 Tax=Cyanobacteria RepID=Q8YXJ0_ANASP Length = 513 Score = 584 bits (1506), Expect = e-165, Method: Composition-based stats. Identities = 192/498 (38%), Positives = 290/498 (58%), Gaps = 11/498 (2%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 +F +LG+ +E L LG+ P+ IQA+ IP LL+GRDV+G +QTG+GKTAAFSLP Sbjct: 1 MNLSFPELGISQERVEHLEKLGFTAPTNIQAQAIPQLLSGRDVVGQSQTGTGKTAAFSLP 60 Query: 64 LLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 +L+ LDP+ KA Q +VL PTRELA+QV +AM F + G+ +A+YGGQ D Q+ L+ Sbjct: 61 ILERLDPQQKAVQAIVLTPTRELAIQVHDAMAQFVGN-SGLRTLAIYGGQSIDRQMLQLK 119 Query: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183 +G IVVGTPGR++D L+RG L L ++ VLDEADEML MGFI+DVE I++Q P+ QT Sbjct: 120 RGVHIVVGTPGRVIDLLERGNLKLDQVKWFVLDEADEMLSMGFIDDVEKILSQAPQDRQT 179 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMR-KNEALVRFLEA 242 ALFSATMP +IR + +F++ P V ++ T I+Q + + K AL LE Sbjct: 180 ALFSATMPPSIRMLVNKFLRSPVTVTVEQPKATPNKINQVAYLIPRHWTKARALQPILEM 239 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 ED + A+IFVRT+ E+ L+ G++ +GD++Q RE+ L R + ++ ++AT Sbjct: 240 EDPETALIFVRTRRTAAELTSQLQAAGHSVDEYHGDLSQQARERLLTRFRSRQVRWVVAT 299 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 D+AARGLDV+++S V+NYD+P E+YVHRIGRTGRAG+ G A+ V+ ERR + ER Sbjct: 300 DIAARGLDVDQLSHVINYDLPDSVETYVHRIGRTGRAGKEGTAITLVQPFERRKQQIFER 359 Query: 363 TMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLE 422 ++ + +P + R + K +V++ L L + ++S++ + + + Sbjct: 360 HVRQNWQLLSIPTRAQIEARHILKLQEQVREALAGERLASFLPIVSELIEKYDAQAIAAA 419 Query: 423 TLAAALLKMAQG--ERTLIVPPDAPMRPKREF--RDRDDRGPRDRNDRGPRGDREDRPRR 478 L A + +P + PK + + R+ G R R++ + R Sbjct: 420 ALQIAYDQTRPAWLSTDAEIPEEVASTPKPKLGGKRREFSGDRGRSNWNKSDNNNSDDER 479 Query: 479 ERRDVGDMQLYRIEVGRD 496 ++ GR Sbjct: 480 RGTPKPKLRT-----GRR 492 >UniRef50_UPI0001C33831 DNA/RNA helicase, superfamily II n=3 Tax=Cyanobacteria RepID=UPI0001C33831 Length = 477 Score = 583 bits (1505), Expect = e-165, Method: Composition-based stats. Identities = 192/472 (40%), Positives = 293/472 (62%), Gaps = 8/472 (1%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 +F +LGL + L +LG+E P+ IQ + IP +L G DVLG +QTG+GKTAA+SLP Sbjct: 1 MTISFENLGLSETRVNKLKELGFENPTEIQEKAIPLMLEGHDVLGQSQTGTGKTAAYSLP 60 Query: 64 LLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 +L+ +D + + Q+L+L PTRELA QVAEA+ DF+ R + ++ +YGGQ D Q+R+L Sbjct: 61 ILEKVDIQDPSVQVLILTPTRELAQQVAEALKDFTVR-RRLYILTVYGGQSIDRQIRSLE 119 Query: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183 +G QIVVGTPGR++D ++R L L L VLDEADEML MGFI+DV+TI+ + PE T Sbjct: 120 RGVQIVVGTPGRVIDLIERKKLILDSLRWAVLDEADEMLSMGFIDDVKTILKKTPESRST 179 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM-RKNEALVRFLEA 242 A FSATMP IR + +F+K P + ++ + I Q+ + V K +AL LE Sbjct: 180 ACFSATMPREIRELVNQFLKSPVTISVERTQAAPTRIEQNIYMVPRGWSKRKALQPVLEI 239 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 ED ++AIIFVRTK ++ L+ G+ +G+++Q+ RE+ + R +DGR+ +++AT Sbjct: 240 EDPESAIIFVRTKQTASDLTTRLQEIGHCVDEYHGNLSQSQRERLVHRFRDGRIKLVVAT 299 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 D+AARGLDVE +S V+NYD+P +SE+Y+HRIGRTGRAG+ G+A+ VE+ +RR++R IER Sbjct: 300 DIAARGLDVEGLSHVINYDLPDNSETYIHRIGRTGRAGKTGKAISIVESADRRMIRQIER 359 Query: 363 TMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLE 422 ++ I ++PN + +RL K +++ L + + L+S++ E D + Sbjct: 360 KLRQKIDICKIPNRSEVEAKRLGKLQNLIKESLIGERMASFLPLVSEL-----STEYDSQ 414 Query: 423 TLAAALLKMA-QGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDRE 473 +AAA L+M + + D + + R N + + +R Sbjct: 415 AIAAAALQMIYDQDCPDWMKTDWEVPEAATPKPVIGRKSNKYNSKNSKHNRN 466 >UniRef50_B2V9H9 DEAD/DEAH box helicase domain protein n=4 Tax=Hydrogenothermaceae RepID=B2V9H9_SULSY Length = 405 Score = 583 bits (1503), Expect = e-165, Method: Composition-based stats. Identities = 165/392 (42%), Positives = 247/392 (63%), Gaps = 3/392 (0%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 M+ TF DL L L++L++LGY KP+ IQ + IP ++ G+D++ AQTG+GKTAAF Sbjct: 1 MSNQGKTFKDLNLSKETLKSLDELGYSKPTEIQEKAIPAVMTGKDLVAQAQTGTGKTAAF 60 Query: 61 SLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 +P+++ ++P+ K Q L+L PTRELA+QVA+ + + K+ + V +A+YGG+ Q+ Sbjct: 61 GVPIVEKVNPKQKKVQALILVPTRELAIQVAKEIKELGKNKK-VYTLAVYGGKSISHQIN 119 Query: 121 ALRQGPQIVV-GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179 L++G +VV GTPGR+ D L+RG L+L + VLDEAD ML MGFI+D+E IM+ +PE Sbjct: 120 FLKKGSDVVVVGTPGRVRDLLERGVLNLDNVKMFVLDEADRMLEMGFIDDIEEIMSYLPE 179 Query: 180 GHQTALFSATMPEAIRRITRRFMK-EPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVR 238 Q LFSATMP+ I + F+ + +R++ T I Q + V K + L Sbjct: 180 DRQNLLFSATMPKEILDLAEEFLNENYETIRVKPDEVTVEKIKQIIYRVNPRDKFKKLTE 239 Query: 239 FLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDI 298 L + + IIF +TK E+AE L G+N++A++GD +Q RE L + G+L I Sbjct: 240 VLSQNEAEKVIIFTQTKIEADELAERLNEEGFNASAIHGDFSQKKRETVLHNFRTGKLKI 299 Query: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLR 358 L+ATDVAARGLD++ + LV+NY +P D+ESY+HRIGRTGRAGR G A+ + E + L+ Sbjct: 300 LVATDVAARGLDIKGVDLVINYGLPRDAESYIHRIGRTGRAGREGTAISIMTPSEDKQLQ 359 Query: 359 NIERTMKLTIPEVELPNAELLGKRRLEKFAAK 390 NI++ K I + + L + +K + K Sbjct: 360 NIQKKTKANIEVINEAQEKKLSSAQKDKSSQK 391 >UniRef50_P25888 ATP-dependent RNA helicase rhlE n=363 Tax=root RepID=RHLE_ECOLI Length = 454 Score = 580 bits (1495), Expect = e-164, Method: Composition-based stats. Identities = 154/385 (40%), Positives = 229/385 (59%), Gaps = 7/385 (1%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +F LGL IL A+ + GY +P+PIQ + IP +L GRD++ AQTG+GKTA F+LPLLQ Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61 Query: 67 NLDPE------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 +L + + L+L PTRELA Q+ E + D+SK++ + + ++GG + Q+ Sbjct: 62 HLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYL-NIRSLVVFGGVSINPQMM 120 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 LR G ++V TPGRLLD + + L ++ LVLDEAD ML MGFI D+ ++ ++P Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 Q LFSAT + I+ + + + P E+ + T ++Q V RK E L + Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMI 240 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 ++ ++F RTK+ +AE L ++G SAA++G+ +Q R + L K G + +L+ Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV 300 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATD+AARGLD+E + VVNY++P E YVHRIGRTGRA G AL V E +LLR+I Sbjct: 301 ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI 360 Query: 361 ERTMKLTIPEVELPNAELLGKRRLE 385 E+ +K IP + +P E + E Sbjct: 361 EKLLKKEIPRIAIPGYEPDPSIKAE 385 >UniRef50_D2QWU0 DEAD/DEAH box helicase domain protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2QWU0_9PLAN Length = 598 Score = 578 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 194/608 (31%), Positives = 310/608 (50%), Gaps = 31/608 (5%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +F DLGL P++ ALN Y +P+ IQ + IP + GRD+ G AQTG+GKTAAF+LPLL Sbjct: 2 SFEDLGLAEPLVRALNAANYTEPTAIQLQAIPPAIAGRDLQGCAQTGTGKTAAFALPLLD 61 Query: 67 NLDPELKA-------PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119 L + P+ LVL+PTRELA Q+ +++ + +H N + +YGG Q+ Sbjct: 62 RLIKNPRQGKLRGRLPRALVLSPTRELAGQIHDSVRRYGRHAMQ-NSLTIYGGVSQVPQV 120 Query: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179 + L G +++ TPGRL D +++G ++LS++ VLDEAD ML MGF+ D+ I+A++P+ Sbjct: 121 KGLNAGQDVLIATPGRLCDLMQQGYINLSEIEVFVLDEADRMLDMGFMPDIRRIIAKLPQ 180 Query: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239 QT LFSATMP I+++ + + +P E+ I+ T I+QS + V K E L Sbjct: 181 QKQTLLFSATMPPEIQKLASQLLHDPVEINIEPERATADGITQSLYYVPTKHKPELLASV 240 Query: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299 L+ E+ A++FVRTK+ + A LE+ G A++G+ +Q+ R++TL K+G + +L Sbjct: 241 LKREEVTRAVVFVRTKHGCNKAALQLEKTGLKVDAIHGNKSQSARQRTLYAFKNGHIQVL 300 Query: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359 +ATDVAARGLDV +S V+NYD+PM+ E+YVHRIGRTGRAG++G A+ F ++ +R LLR+ Sbjct: 301 VATDVAARGLDVTGVSHVINYDLPMEPETYVHRIGRTGRAGKSGIAISFCDDEQRGLLRD 360 Query: 360 IERTMKLTIP-EVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEE 418 ++R + IP E E+P+ +++ + + + + Sbjct: 361 VQRILGKKIPVENEMPDGIPGLPANIDR-----DGGAKRAPWGNKKPFRAGPGGGGGYGG 415 Query: 419 LDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRR 478 + + + + G + D + RD G R+ P+G+R RP+R Sbjct: 416 GNRSSGGSGGSRGFGGRKPYRSGGDRDGQGGGYGAPRDG-GSREGGYGRPQGERPARPQR 474 Query: 479 ERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEG---DISSRYIGNIKLFASHSTIELPK 535 + G + G + IV A EG + Sbjct: 475 PSNERGY------DGGYEQ--TPAEIV---AREGLGEGAPRSAGPRPAGRPAGPGAPAAA 523 Query: 536 GMPGEVLQHFTRTRILNKPMNMQLLGDAQP--HTGGERRGGGRGFGGERREGGRNFSGER 593 + + G+ + GG RR G G GE+ G + F+ +R Sbjct: 524 QGGPRKFAGPKGKKPFGAKPSGYRSGEGRSEYRGGGNRRPEGVGPNGEKPFGAKRFAVKR 583 Query: 594 REGGRGDG 601 + + + Sbjct: 584 KFKPKSNK 591 >UniRef50_Q82T78 RhlE; ATP-dependent RNA helicase RhlE n=1 Tax=Nitrosomonas europaea RepID=Q82T78_NITEU Length = 498 Score = 578 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 156/423 (36%), Positives = 244/423 (57%), Gaps = 12/423 (2%) Query: 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 + TFA LGL + IL A+ND GY P+PIQA+ IP +L G+DV+ AQTG+GKTA F+LPL Sbjct: 4 DVTFAQLGLSSEILHAVNDEGYVNPTPIQAQVIPSILAGKDVMASAQTGTGKTAGFTLPL 63 Query: 65 LQNLD--------PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYD 116 L L P + L++APTRELA+Q+ E++ + K++ + ++GG + Sbjct: 64 LYRLQAYANTSVSPARHPVRALIMAPTRELAMQIDESVRKYGKYLA-LRTAVVFGGINIE 122 Query: 117 VQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQ 176 Q+ AL+ G +I+V TPGRLLD +++ ++ SK LVLDEAD ML MGF+ D++ +MA Sbjct: 123 PQIAALQAGVEILVATPGRLLDLVEQKAVNFSKTEILVLDEADRMLDMGFLPDIKRVMAL 182 Query: 177 IPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEAL 236 + Q+ +FSAT IR++ +K+P + T IS V K L Sbjct: 183 LSPQRQSLMFSATFSGEIRKLADSLLKQPVRIEAAVQNTVNESISHVIHWVKPDSKFALL 242 Query: 237 VRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRL 296 + + ++ A+IFV+TK+ +A+ L R+ ++ A++GD NQ R Q L K G + Sbjct: 243 LHLIRQQNLKQALIFVKTKHGASHLAQMLSRHEISAVAIHGDRNQQQRTQALAEFKHGDV 302 Query: 297 DILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRL 356 IL+ATDVAARG+D+E++S V+NY++P + E YVHRIGRTGRAG G+A+ V E+ L Sbjct: 303 QILVATDVAARGIDIEKLSHVINYELPGNPEDYVHRIGRTGRAGSKGKAISLVSEHEKEL 362 Query: 357 LRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEG 416 L NIE+ + + ++ + + + + ++ + + + + Sbjct: 363 LANIEKLLNAKLETEQIAGFD---AEQFARSLPDRKNRMSAGNSRYGNKPMENGSEKSRS 419 Query: 417 EEL 419 E+ Sbjct: 420 EKH 422 >UniRef50_B0SU57 ATP-dependent RNA helicase, DEAD-box family (DeaD) n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SU57_LEPBP Length = 534 Score = 578 bits (1491), Expect = e-163, Method: Composition-based stats. Identities = 195/494 (39%), Positives = 280/494 (56%), Gaps = 25/494 (5%) Query: 2 AEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFS 61 E F GL+ IL+ + + G+E PSPIQ + IP +L G+D++ AQTG+GKTAA+ Sbjct: 11 TEVGNDFQSFGLRPEILQGITEAGFESPSPIQKQAIPLVLEGKDLIAQAQTGTGKTAAYG 70 Query: 62 LPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 LP L + E Q+LVL PTRELA+QV++ + KH+ G+ +YGG Y Q+ Sbjct: 71 LPCLNRIKVED-GMQVLVLTPTRELALQVSDELFKLGKHL-GIKTTTIYGGSSYSKQITQ 128 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 + +G Q+ V TPGRLLD LK L K S ++LDEADEML MGF++D+E+I +P Sbjct: 129 VAKGAQVAVATPGRLLDLLKGKELKNFKPSMVILDEADEMLDMGFMDDIESIFNLLPTKR 188 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 QT LFSATMPE I+++ ++ P V+I ++ + +I Q Y+ + + A+VR L+ Sbjct: 189 QTLLFSATMPEPIKKLASKYQTHPAHVKIAATEKSSKNIEQVYYIIDEAEREIAVVRILD 248 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 E+ AIIF +TK ++ L GY AL+GD+NQ REQ L+ L DGR+ IL+A Sbjct: 249 YENPFKAIIFTKTKKEADDLKSTLSFKGYPVEALHGDLNQKQREQVLKSLHDGRVKILVA 308 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 TDVAARGLDV+ +SLV+NY +P DSESY HRIGRTGRAG++G+A+ V RE R L ++ Sbjct: 309 TDVAARGLDVKDLSLVINYHLPFDSESYTHRIGRTGRAGKSGKAVTLVTTRESRALLRLK 368 Query: 362 RTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDL 421 T + LP + + R E F KV +D + A+L K+ + + L Sbjct: 369 GTSGTNLTIAALPTKKEVHLSREEDFLKKVVDTEIHADAE---AVLEKLLKLEDKRSIAL 425 Query: 422 ETLAAAL--LKMAQGERTLIVPPDAPMRPKREFRDRDD------------------RGPR 461 + L+ L K++ E+ P + P R Sbjct: 426 KLLSKMLDNTKISGPEKIGKTPAEWSEMPPGGGSGGRRRRDDGGGSGGGRGGYRGARSNS 485 Query: 462 DRNDRGPRGDREDR 475 DR++R RGDR++R Sbjct: 486 DRSERSDRGDRKER 499 >UniRef50_C4ZJL9 DEAD/DEAH box helicase domain protein n=1 Tax=Thauera sp. MZ1T RepID=C4ZJL9_THASP Length = 545 Score = 578 bits (1490), Expect = e-163, Method: Composition-based stats. Identities = 179/506 (35%), Positives = 266/506 (52%), Gaps = 27/506 (5%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +FADLGL +L+A+ D GY +P+PIQ + IP ++ G+DV+G AQTG+GKTA F+LPLL Sbjct: 2 SFADLGLIPELLQAVTDAGYTEPTPIQRQAIPIVIAGKDVMGGAQTGTGKTAGFTLPLLH 61 Query: 67 NL--------DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQ 118 + P + L+LAPTRELA+QV E++ +SKH+ + V +YGG Q Sbjct: 62 RIARHANTSTSPARHQTRALILAPTRELAMQVFESVKTYSKHLP-LRSVCVYGGVDIRPQ 120 Query: 119 LRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP 178 LR+G +IV+ TPGRLLDHL++ +++LS++ LVLDEAD ML MGFI D++ I+A +P Sbjct: 121 QAELRRGIEIVIATPGRLLDHLEQKSINLSQVEVLVLDEADRMLDMGFIPDIKRILALLP 180 Query: 179 EGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVR 238 + Q+ LFSAT + I+R+ + +KEPQ + + I+ V K L Sbjct: 181 KQRQSLLFSATFSDEIKRLADQMLKEPQLIEVARRNMVSETITHVVHPVSSGMKRNLLAH 240 Query: 239 FLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDI 298 L + A++FV TK +A LER+G ++ A++GD Q R TLE K G+L + Sbjct: 241 LLRHKPDTQALVFVDTKLMCGRLAHYLERSGISADAIHGDKGQQQRTDTLEAFKSGKLRV 300 Query: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLR 358 L+ATDVAARGLD++ + V+N+++P +E YVHRIGRTGRAG G A+ V + E+ L Sbjct: 301 LVATDVAARGLDIDELPFVINFELPHTAEDYVHRIGRTGRAGHHGYAISLVSSEEKHWLS 360 Query: 359 NIERTMKLTIPEVELPNAE------------------LLGKRRLEKFAAKVQQQLESSDL 400 IE+ +KL IP+ +P + E A + + Sbjct: 361 EIEKLIKLQIPQERVPGFDPDPDFHEAGSRGHRGRRPAAAAADTEAQAPAARSGGRERGV 420 Query: 401 DQYRALLSKIQPTAEGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGP 460 ++ + EG +++ P + P R +R R Sbjct: 421 ERSAEARREPAREREGLRAGPRRGRSSVAADGFDFSKPYEPLNPPRRGRRADSAHRGRCR 480 Query: 461 RDRNDRGPRGDREDRPRRERRDVGDM 486 + R P RR R + Sbjct: 481 QARPATSPPASDRGAARRPRAQIRGT 506 >UniRef50_A8TFK3 DEAD/DEAH box helicase domain protein n=1 Tax=Methanococcus voltae A3 RepID=A8TFK3_METVO Length = 584 Score = 577 bits (1489), Expect = e-163, Method: Composition-based stats. Identities = 189/585 (32%), Positives = 303/585 (51%), Gaps = 46/585 (7%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGR-DVLGMAQTGSGKTAAFSLPLLQ 66 F DL + I+E L++ G+ + + IQ + IP +L+ DV+G AQTG+GKT AF +P++Q Sbjct: 3 FRDLNISESIMERLDEKGFTEATQIQEKAIPIVLDTELDVVGQAQTGTGKTLAFGIPIIQ 62 Query: 67 NLDPE--------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQ 118 + + KA + ++L PTRELA+QV + + +K + + + +YGGQ + Q Sbjct: 63 KIQEKIEENGRKNKKAVKAIILTPTRELALQVHDEIDSVNKGNK-LRLCTVYGGQSIEKQ 121 Query: 119 LRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP 178 + LR G IV+GTPGR++DHL R TL L+++ LVLDEADEML +GFI+DVE IM++ Sbjct: 122 INKLRNGVDIVIGTPGRVIDHLGRRTLKLNEIDFLVLDEADEMLNLGFIDDVEEIMSKCK 181 Query: 179 EGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVR 238 E + LFSAT+P++I + M E + +R++S T Q Y+ V K E L R Sbjct: 182 EDCRKLLFSATLPKSIMELVELHMGEYETIRVKSKALTTELTEQIYYEVKEHDKFELLRR 241 Query: 239 FLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDI 298 ++ E ++F +TK ++ L Y+S AL+GDMNQ RE L R K ++DI Sbjct: 242 IIDKEPGFYGLVFCKTKADVDQLMRRLNDENYSSEALHGDMNQKQRELALSRFKSHKIDI 301 Query: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLR 358 +IATDVAARG+D+ ++ V+NYDIP + E+YVHRIGRTGRAG G A+ FVE RE R + Sbjct: 302 MIATDVAARGIDINELTHVINYDIPQNPEAYVHRIGRTGRAGNKGTAITFVEPREFRRFK 361 Query: 359 NIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEE 418 I + K + ++P+ + + K++Q +++ + + L E E Sbjct: 362 YIMKISKSDAKKEKIPDVTEIVELTKTNIIGKLKQLIQTENSEDSEDL--------ENYE 413 Query: 419 LDLETLAAALLKMAQGE---RTLIVPPDAPMRPKREFRDRDDRGPRDRNDR--------- 466 + + L+++A + LI ++ + D G R ND Sbjct: 414 FENLEIVDELIELADSKVIIDKLISQLFKEELNRKSYGRIGDYGSRKGNDGRDSRRDGRN 473 Query: 467 ----------------GPRGDREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIAN 510 + DR RR+ + +G D ++ R ++ + Sbjct: 474 DRDRRDGRRNDRDRNDRNDRNDRDRRDNRRRNNDGGSRLFVALGSMDNMDTRRLLRKVLE 533 Query: 511 EGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPM 555 + D+S I + ++ + S I + +++ F R KP+ Sbjct: 534 KSDVSKDNISEVNVYRNFSFISADEKTAKQIVDSFRSERRNGKPL 578 >UniRef50_C5PZD1 ATP-dependent RNA helicase n=5 Tax=Bacillales RepID=C5PZD1_STAAU Length = 517 Score = 576 bits (1487), Expect = e-163, Method: Composition-based stats. Identities = 183/468 (39%), Positives = 287/468 (61%), Gaps = 7/468 (1%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 F +LG+ +++L +G+++P+PIQ + IP+ L G D+LG AQTG+GKT AF +PL++ Sbjct: 14 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 73 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 + + + Q L+LAPTRELA+QVAE + +FS+ +GV VV ++GG + Q++AL++GP Sbjct: 74 KVVGK-QGVQSLILAPTRELAMQVAEQLREFSRG-QGVQVVTVFGGMPIERQIKALKKGP 131 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE-GHQTAL 185 QIVVGTPGR++DHL R TL + L+LDEADEM+ MGFI+D+ IM +IP QT L Sbjct: 132 QIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTML 191 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSATMP+AI+ + ++FMK P+ ++ ++ + P I + Y V + K + FL+ Sbjct: 192 FSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDVHQP 251 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 + AI+F RTK E+ AL GY + L+GD+ QA R + L++ K+ +++IL+ATDVA Sbjct: 252 ELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVA 311 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARGLD+ +S V N+DIP D+ESY HRIGRTGRAG+ G A+ FV E +R IE Sbjct: 312 ARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDANG 371 Query: 366 LTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLA 425 + + P+ + + + R + KV+ + + + + +++ E D++ +A Sbjct: 372 RKMSALRPPHRKEVLQAREDDIKEKVENWMSKKSESRLKRISTELLN----EYNDVDLVA 427 Query: 426 AALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDRE 473 A L ++ + + V R+ R+ G R+RN + + Sbjct: 428 ALLQELVEANDEVEVQLTFEKPLSRKGRNGKPSGSRNRNSKRGNPKFD 475 >UniRef50_Q126W4 DEAD/DEAH box helicase-like n=153 Tax=Bacteria RepID=Q126W4_POLSJ Length = 579 Score = 576 bits (1486), Expect = e-163, Method: Composition-based stats. Identities = 167/390 (42%), Positives = 242/390 (62%), Gaps = 9/390 (2%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 TF +L L IL+A+ + GY+ P+PIQA+ IP +L G D+LG AQTG+GKTAAF+LP+LQ Sbjct: 2 TFEELKLAPAILKAVLEQGYDTPTPIQAQAIPAVLAGSDLLGGAQTGTGKTAAFTLPMLQ 61 Query: 67 NLDPELK--------APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQ 118 L E + A + L++ PTRELA QV E++ + K++ + + ++GG Q Sbjct: 62 RLSTEPRLTNRRGVNAVRALIMTPTRELAAQVEESVRTYGKYL-DLTSMVMFGGVGMGAQ 120 Query: 119 LRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP 178 + LR+G I+V TPGRLLDH +GTLDLS++ LVLDEAD ML MGFI D++ ++A +P Sbjct: 121 IDKLRRGVDILVATPGRLLDHAGQGTLDLSQVQILVLDEADRMLDMGFIHDIKKVLALVP 180 Query: 179 EGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVR 238 + Q+ LFSAT + IR + +++P +++ TT I+Q+ V +K L Sbjct: 181 KHKQSLLFSATFSDEIRELANGLLRDPLHIQVTPRNTTVQRITQTIHPVGRSKKKALLTH 240 Query: 239 FLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDI 298 + ++ ++F RTK VAE L +NG + AL+G+ +Q R Q L+ KDG + Sbjct: 241 IINEHNWSQVLVFTRTKFGANNVAEHLTKNGIEAMALHGNKSQTARTQALQGFKDGTIRA 300 Query: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLR 358 L+ATD+AARG+D++ + VVNY+IP SE YVHRIGRTGRAG +G A+ V E ++ Sbjct: 301 LVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGNSGEAVSLVCLDEEGFMQ 360 Query: 359 NIERTMKLTIPEVELPNAELLGKRRLEKFA 388 +IER K I +V +P E R E A Sbjct: 361 DIERFTKQNIEKVLVPGFEAEPGERAEPLA 390 >UniRef50_Q5HME0 Probable DEAD-box ATP-dependent RNA helicase SERP1688 n=56 Tax=Staphylococcus RepID=Y1688_STAEQ Length = 509 Score = 575 bits (1483), Expect = e-162, Method: Composition-based stats. Identities = 189/479 (39%), Positives = 286/479 (59%), Gaps = 8/479 (1%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 F +LG+ ++ L +G+++P+PIQ + IP+ L G D+LG AQTG+GKT AF +PL++ Sbjct: 3 NFKELGISDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIE 62 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 + + + Q L+LAPTRELA+QVAE + +FSK + V VV ++GG + Q++AL++GP Sbjct: 63 KVVGQ-QGVQSLILAPTRELAMQVAEQLREFSKGQK-VQVVTVFGGMPIERQIKALKRGP 120 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP-EGHQTAL 185 QIVVGTPGR++DHL R TL + L+LDEADEM+ MGFI+D+ IM +IP E QT L Sbjct: 121 QIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQTML 180 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSATMP+AI+ + ++FMK P+ ++ ++ + P I + Y V + K + FL+ Sbjct: 181 FSATMPKAIQELVQQFMKAPKIIKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFLDVHQP 240 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 + AI+F RTK E+ AL GY + L+GD+ QA R + L++ K+ ++DIL+ATDVA Sbjct: 241 ELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVA 300 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARGLD+ +S V N+DIP D+ESY HRIGRTGRAG+ G A+ FV E +R IE Sbjct: 301 ARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDVNN 360 Query: 366 LTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLA 425 + + P+ + + K R + +VQ + + + + + S++ E D L Sbjct: 361 RRMKALRPPHRKEVLKAREDDIKDRVQNWMSRENEPRLQRISSELLK-----EYDSTELV 415 Query: 426 AALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVG 484 A+LL+ + +P G R N + G +++ RR + G Sbjct: 416 ASLLQELVEANDEVEVQLTFEKPLARKNRSSKGGSRRSNHKRGNGKFDNKNRRSKGSKG 474 >UniRef50_Q30PP0 DEAD/DEAH box helicase-like protein n=11 Tax=Bacteria RepID=Q30PP0_SULDN Length = 540 Score = 573 bits (1478), Expect = e-162, Method: Composition-based stats. Identities = 189/486 (38%), Positives = 282/486 (58%), Gaps = 15/486 (3%) Query: 3 EFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSL 62 E TF DLGLK IL ++ D G+ PSPIQA IP +L GRD++G A TG+GKTAAF L Sbjct: 11 EKLITFDDLGLKKEILRSVKDAGFTVPSPIQAAAIPFILAGRDIVGQAHTGTGKTAAFGL 70 Query: 63 PLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 P L N++P ILV+ PTRELA QV++ + + +++ G V +YGG Y+ Q+ + Sbjct: 71 PALNNINPND-GVGILVITPTRELATQVSDELFKYGRNI-GARTVTVYGGSSYNRQIDLI 128 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 ++G +VV TPGRLLD LK+ L S +VLDEADEML MGF++D+ I + +P Q Sbjct: 129 QRGASVVVATPGRLLDILKKNLLKDFAPSIVVLDEADEMLDMGFLDDINEIFSYLPSNRQ 188 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 T LFSATMP+ I+ + R + P+ + I TT DI+Q Y+ + +++A++R ++A Sbjct: 189 TLLFSATMPKPIKLLAERILDNPEFISITKGETTNTDINQEYYVIEESERDDAIIRLMDA 248 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 E +I+F RTK+ ++ L GY + L+GDM Q RE ++ K+ + +L+AT Sbjct: 249 EACQKSIVFCRTKSEVDRLSNVLSSAGYLANGLHGDMEQRQRETVIKGFKNNGVKVLVAT 308 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 DVAARG+ V+ IS V NY IP D ESYVHRIGRTGRAG G+A+ + E + L+ I+ Sbjct: 309 DVAARGIHVDNISHVFNYHIPFDPESYVHRIGRTGRAGTKGKAITLLTPLEFKELQRIKT 368 Query: 363 TMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLE 422 + T+ +P+ L L+ A ++ E + D+ +L + E++D Sbjct: 369 KVGTTMTHAFVPSKNDLRAINLKSIATSIE---EHNIYDEAHQILDML-----KEDIDEP 420 Query: 423 TLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGP----RGDREDRPRR 478 T+ L+ M +R I P++ P + +R + R+ +G RG+R RP Sbjct: 421 TIMFKLVSMIL-DRQAIQGPNSIGIPAEKLAAILERADKRRDSKGGRGNFRGNRSARPSG 479 Query: 479 ERRDVG 484 +R G Sbjct: 480 DRNRSG 485 >UniRef50_Q2SZW4 ATP-dependent RNA helicase RhlE n=104 Tax=Proteobacteria RepID=Q2SZW4_BURTA Length = 571 Score = 572 bits (1476), Expect = e-161, Method: Composition-based stats. Identities = 157/383 (40%), Positives = 238/383 (62%), Gaps = 13/383 (3%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 + TF GL A IL A+ + GY P+PIQA IP +L+GRDV+G AQTG+GKTA+FSLP Sbjct: 99 VDATFDQFGLAAEILRAIAEQGYTTPTPIQANAIPVVLSGRDVMGAAQTGTGKTASFSLP 158 Query: 64 LLQNLDPELKA--------PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRY 115 ++Q L P+ + L+L PTRELA QVA + ++KH + ++GG Sbjct: 159 IIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP-LRSAVVFGGVDM 217 Query: 116 DVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMA 175 + Q+ LR+G +I++ TPGRLLDH+++ T +L ++ LVLDEAD ML MGF+ D++ I+ Sbjct: 218 NPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILN 277 Query: 176 QIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA 235 +P+ QT LFSAT I+++ +++ PQ + + S ++Q + V K A Sbjct: 278 LLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAA 337 Query: 236 LVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGR 295 +V+ + I+F +K +A +ER+G +AA++GD +Q+ R Q L+ K G Sbjct: 338 VVKLIRDRSLKQVIVFCNSKIGASRLARQIERDGIVAAAIHGDRSQSERMQALDAFKRGE 397 Query: 296 LDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERR 355 ++ L+ATDVAARGLD+ + V+N+D+P ++E YVHRIGRTGRAG +G AL ER+ Sbjct: 398 IEALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERK 457 Query: 356 LLRNIERTMKLTIP----EVELP 374 L +IE+ +K T+ E++LP Sbjct: 458 QLADIEKLIKRTLSLETLELDLP 480 >UniRef50_P42305 ATP-dependent RNA helicase dbpA n=99 Tax=Firmicutes RepID=DBPA_BACSU Length = 479 Score = 572 bits (1476), Expect = e-161, Method: Composition-based stats. Identities = 170/406 (41%), Positives = 248/406 (61%), Gaps = 3/406 (0%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F + + IL AL LGY +P+ +Q IP L +D++ +QTGSGKTA+F +PL + Sbjct: 4 FKNYQISHDILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPLCEL 63 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 + + PQ L+L PTRELAVQV E +T+ + R + A++G +D Q L+Q Sbjct: 64 ANWDENKPQALILTPTRELAVQVKEDITNIGRFKR-IKATAVFGKSSFDKQKAELKQKSH 122 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 IVVGTPGR+LDH+++GTL L +LS LV+DEADEML MGFIE VE I+ +P T LFS Sbjct: 123 IVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPTERTTMLFS 182 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 AT+P+ I +++R++M+ P+ + ++++ T +I + V K L L E+ D+ Sbjct: 183 ATLPQDIEKLSRQYMQNPEHIEVKAAGLTTRNIEHAVIQVREENKFSLLKDVLMTENPDS 242 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 IIF RTK ++ + L+ GY ++G M Q R + K G L+ATDVAAR Sbjct: 243 CIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAAR 302 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 G+D+E ISLV+NYD+P++ ESYVHR GRTGRAG G+A+ FV E+R L +IE + Sbjct: 303 GIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFE 362 Query: 368 IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPT 413 I ++E P+ E + +++ E F AK+ + ES D+ L I Sbjct: 363 IQKIEAPSQEEVARKKPE-FLAKLNDRPESKK-DKSEELNKDIMKL 406 Score = 65.1 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 46/133 (34%), Gaps = 2/133 (1%) Query: 425 AAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVG 484 A K + + + + + P R + + + E + Sbjct: 344 VTAFEKRFLADIEEYIGFEIQKIEAPSQEEVARKKPEFLAKLNDRPE-SKKDKSEELNKD 402 Query: 485 DMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQH 544 M+LY G+ + VG IA +S+ IG I + + S +E+ G VL+ Sbjct: 403 IMKLYF-NGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDNASYVEILNGKGPHVLKV 461 Query: 545 FTRTRILNKPMNM 557 T + K + + Sbjct: 462 MKNTTVKGKQLKV 474 >UniRef50_C4G990 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4G990_9FIRM Length = 538 Score = 572 bits (1475), Expect = e-161, Method: Composition-based stats. Identities = 154/366 (42%), Positives = 230/366 (62%), Gaps = 2/366 (0%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F++ GLK +L A+ GYE+P+P+Q E IP +L GRD++G AQTG+GKTAAF+LP+L Sbjct: 64 FSEFGLKKDLLSAIRKAGYEEPTPVQEESIPVILEGRDMIGCAQTGTGKTAAFALPVLHK 123 Query: 68 LDP-ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 L + + LVL PTRELA+Q+ + + +++ + V LYGG + Q+ ALR+G Sbjct: 124 LTLLKRPRVRALVLTPTRELAIQIFDNFKKYGRYLH-LRTVCLYGGAKRGPQIGALRRGA 182 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 I+V TPGRLLD + + +DLS + LVLDEAD ML MGF+ DV I+ P QT +F Sbjct: 183 DILVATPGRLLDFMGQDLVDLSSVEILVLDEADRMLDMGFLPDVSRIVESTPSKRQTLMF 242 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SATM + +R++ R +K+P +V++ + Q K E + L E + Sbjct: 243 SATMEKEVRQLADRMLKDPVQVQVTPENEAADTVEQKLIFSSREDKREIIASLLTDEAVE 302 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 +AI+F RTK+ +++ L+R G S A++GD Q R+ L R K G++ +++ATDVAA Sbjct: 303 SAIVFTRTKHGADKLSRELKRRGIESVAIHGDKTQGQRQDALNRFKSGKVRVMVATDVAA 362 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RGLD+ ++S V NYD+P ++ +Y+HRIGRTGRAG +G A+ E LR +E ++ Sbjct: 363 RGLDIPKLSHVFNYDVPEEAGAYIHRIGRTGRAGESGIAITLCCEAELDALREVEELLEK 422 Query: 367 TIPEVE 372 IPE++ Sbjct: 423 PIPELQ 428 >UniRef50_Q0AFH3 DEAD/DEAH box helicase domain protein n=1 Tax=Nitrosomonas eutropha C91 RepID=Q0AFH3_NITEC Length = 488 Score = 571 bits (1474), Expect = e-161, Method: Composition-based stats. Identities = 156/409 (38%), Positives = 236/409 (57%), Gaps = 15/409 (3%) Query: 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 + TF L L + IL A+ D GY P+PIQA+ IP +L G+DV+ AQTG+GKTA F+LPL Sbjct: 4 DVTFEQLDLSSEILRAVIDEGYINPTPIQAQVIPPILAGKDVMASAQTGTGKTAGFTLPL 63 Query: 65 LQNLD--------PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYD 116 L +L P + L++APTRELA+Q+ E++ + K++ + ++GG + Sbjct: 64 LHHLQAHASSSTSPARHPVRALIMAPTRELAMQIDESVRKYGKYLA-LRTTVVFGGVNIE 122 Query: 117 VQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQ 176 Q+ LR G +I+V TPGRLLD ++ ++ SK LVLDEAD ML MGF+ D++ +MA Sbjct: 123 PQITELRNGVEILVATPGRLLDLVEHKAVNFSKTEILVLDEADRMLDMGFLPDIKKVMAL 182 Query: 177 IPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEAL 236 +P Q+ +FSAT + IR++ +K P + + + T IS + K L Sbjct: 183 LPSQRQSLMFSATFSDEIRKLADGLLKHPVRIEVAAQNTINESISHVVHRIKPESKFALL 242 Query: 237 VRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRL 296 + ++ +D A++FV+TK+ ++A+ L + + A++GD NQ R Q L K G + Sbjct: 243 LHLVKQQDLKQALVFVKTKHGASQLAQMLSHHKILALAIHGDKNQQQRTQALSEFKHGDV 302 Query: 297 DILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRL 356 IL+ATDVAARG+D+E++S VVNY++P + E YVHRIGRTGRAG G+A+ V E L Sbjct: 303 QILVATDVAARGIDIEKLSHVVNYELPGNPEDYVHRIGRTGRAGSKGKAISLVSEHETEL 362 Query: 357 LRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRA 405 L +IE+ + + E + E F + + D R Sbjct: 363 LTSIEKLLNTKLE------IEQIAGFDAELFVRSLPDRKNRVSADIARR 405 >UniRef50_B1CAG5 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1CAG5_9FIRM Length = 510 Score = 570 bits (1471), Expect = e-161, Method: Composition-based stats. Identities = 164/474 (34%), Positives = 267/474 (56%), Gaps = 11/474 (2%) Query: 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 +TTF++L + I L+++G+ P+ IQ + IP + +G DV+G +QTG+GKT AF++P Sbjct: 3 KTTFSELEINLDINRVLDEMGFTNPTDIQNKAIPAIRSGVDVIGKSQTGTGKTIAFAIPA 62 Query: 65 LQNLDPELKAP--QILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 ++ +D E + P Q+L++ PTRELA Q + +K+M + VV +YGG + Q+ L Sbjct: 63 IEKIDIEQEKPTAQVLIICPTRELAQQGYAEIKKLTKYMPEIKVVDIYGGVSMERQISKL 122 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 ++ IV+GTPGR+ DHLKR TL L + +VLDEADEML MGF ED++TI+ P+ Q Sbjct: 123 KK-AHIVIGTPGRIKDHLKRRTLKLQNIKMVVLDEADEMLSMGFKEDIDTILKTAPDTRQ 181 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 T LFSATMP AI I F+K P ++I T I+Q+Y V +K E L L Sbjct: 182 TVLFSATMPPAIMNIIDTFLKNPLLIQIDKEQVTVNKIAQNYIDVPKGKKKEVLNLLLHY 241 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 IIF TK ++ + L +NG+++ L+GD+ Q R + + K+ + IL+AT Sbjct: 242 YGSKLTIIFCNTKRMVDDLTKFLRKNGFSAECLHGDIRQNERSRVMSNFKNAKTPILVAT 301 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENR-ERRLLRNIE 361 DVAARG+DV+ + V+NYDIP +SE Y+HRIGRT R G+ G ++ NR + L+ I Sbjct: 302 DVAARGIDVKDVEYVINYDIPQNSEYYIHRIGRTARGGKTGTSITMTNNRKQVTDLKMIL 361 Query: 362 RTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDL 421 + I ++++P + + + + + L+ + + + ++S ++ E Sbjct: 362 KETNSKIKKLDIPTKNDINSKNSKDNMSVIISALKREN-NSHDEMISDLKDLGYSE---- 416 Query: 422 ETLAAALLKMAQGE--RTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDRE 473 +A A L + GE ++ D + + + + ++ R + G++ Sbjct: 417 NQIAKAALNLYFGETKENIVKIEDISINKETKRYNDGNKNNARRKKQKSYGNKS 470 >UniRef50_C5CU85 DEAD/DEAH box helicase domain protein n=10 Tax=Comamonadaceae RepID=C5CU85_VARPS Length = 601 Score = 570 bits (1470), Expect = e-161, Method: Composition-based stats. Identities = 169/421 (40%), Positives = 241/421 (57%), Gaps = 9/421 (2%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 F +L L IL+A+++ GY+ P+PIQA+ IP +L G D+LG AQTG+GKTAAF+LP+L Sbjct: 2 NFDELKLAPAILKAVHEHGYDTPTPIQAQAIPAVLEGHDLLGGAQTGTGKTAAFTLPMLH 61 Query: 67 NLDPELK--------APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQ 118 L + LVL PTRELA QV E++ + K++ ++ ++GG + Q Sbjct: 62 KLSTGASATNKFGGIGIRALVLTPTRELAAQVEESVRTYGKYLE-LDSTVIFGGVGMNPQ 120 Query: 119 LRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP 178 + L++G I+V TPGRLLD ++G LDLS++ L+LDEAD ML MGFI DV+ I+A +P Sbjct: 121 ISKLKKGVDILVATPGRLLDLQQQGMLDLSQVQMLILDEADRMLDMGFIHDVKKILALVP 180 Query: 179 EGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVR 238 + Q+ LFSAT + IR + +K PQ +++ TT I+Q V +K L Sbjct: 181 KEKQSLLFSATFSDEIRDLAATLLKNPQSIQVTPRNTTVQRITQVIHPVGRGKKKALLAH 240 Query: 239 FLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDI 298 + + ++F RTK VAE L +NG + AL+G+ +Q+ R Q L K G + Sbjct: 241 IINENKWSQVLVFTRTKFGANSVAEFLTKNGIEAMALHGNKSQSARTQALAGFKSGDIRA 300 Query: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLR 358 L+ATD+AARG+D++ + VVNY+IP SE YVHRIGRTGRAG +G A+ FV E ++ Sbjct: 301 LVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGSSGEAVSFVCMDEEGFMQ 360 Query: 359 NIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEE 418 IER K TIP + R E A Q + R ++ A E Sbjct: 361 EIERFTKQTIPVQFVEGFGPEEGERAEPIAMGRQTIWGGAGRPPSRDVMQAAAKAARTEM 420 Query: 419 L 419 L Sbjct: 421 L 421 >UniRef50_A9NFK0 ATP-dependent RNA helicase, superfamily II n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NFK0_ACHLI Length = 448 Score = 569 bits (1468), Expect = e-160, Method: Composition-based stats. Identities = 148/404 (36%), Positives = 238/404 (58%), Gaps = 6/404 (1%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F++L + I +AL GYE P+ IQ + IP LL+G+D+LG AQTG+GKTAAF++P+LQ Sbjct: 3 FSELNIIERIQKALTLSGYEAPTAIQEQAIPILLSGQDLLGSAQTGTGKTAAFAIPILQK 62 Query: 68 L-----DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 + + Q L+L PTRELA+Q+ E + ++K++ ++ +YGG Q AL Sbjct: 63 IYETKEHKAPRKVQALILTPTRELALQIHENVKIYAKYLNIIST-TIYGGVSQKRQEEAL 121 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 ++G +V+ TPGRLLD + + + L + LVLDEAD+ML MGFI+DV +I+ + P+ Q Sbjct: 122 KRGVDVVIATPGRLLDLMNQKIISLQDVRYLVLDEADQMLDMGFIKDVTSIVDKTPKKRQ 181 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 T LFSATMP+ I ++++ + P+ + + T I+QS + V K L+ + Sbjct: 182 TMLFSATMPKQIEVLSKQILVNPERIAVTPVTQTLDAITQSVYMVNKANKTLLLIDLIYT 241 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 + + ++F +TK+ ++ + L G S ++G +QA RE+ L K G+ IL+AT Sbjct: 242 LNMKSVLVFTKTKHGANKLVKNLMNLGIESEPIHGSKSQAARERALANFKKGKTKILVAT 301 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 D+AARG+D+E + V+N+++P E+Y+HRIGRTGRAG +G AL V+ E++LL +E+ Sbjct: 302 DIAARGIDIEALDYVINFELPEVPETYIHRIGRTGRAGLSGMALSLVDPSEQKLLTQVEK 361 Query: 363 TMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRAL 406 + I V ++ E K++ + L Sbjct: 362 HINSKIEAVGHKYQIQSQPKQREVITDKLKTDTSKKQEKPKKEL 405 >UniRef50_Q0HYG8 DEAD/DEAH box helicase domain protein n=78 Tax=Bacteria RepID=Q0HYG8_SHESR Length = 549 Score = 568 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 160/482 (33%), Positives = 261/482 (54%), Gaps = 5/482 (1%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +F+ LGL PI +A+ + GY+ PSPIQA+ IP +L G+DV+ AQTG+GKTA F+LPLL+ Sbjct: 2 SFSSLGLSLPIQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLE 61 Query: 67 NLDPELKA----PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 L KA + LVL PTRELA QV+E++ + K++ + ++GG + Q++ L Sbjct: 62 LLSKGNKAKAGQIRALVLTPTRELAAQVSESVETYGKYLP-LRSAVVFGGVPINPQIQKL 120 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 R G ++V TPGRLLD +++ + ++L LVLDEAD ML MGFI D++ I+A +P Q Sbjct: 121 RHGVDVLVATPGRLLDLVQQNVVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKRQ 180 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 +FSAT + IR + + + +P E+ + + Q V +K+ L++ ++ Sbjct: 181 NLMFSATFSDEIRELAKGLVNQPVEISVTPRNAAANTVKQWICPVDKNQKSALLIQLIKQ 240 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 ED+ ++F RTK+ +A++L + ++AA++G+ +Q R + L K G + +L+AT Sbjct: 241 EDWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLVAT 300 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 D+AARGLD++++ VVN+D+P E YVHRIGRTGRAG +G+A+ V + E +LLR+IER Sbjct: 301 DIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSSEEFKLLRDIER 360 Query: 363 TMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLE 422 + + E+ A + + Q + + G D Sbjct: 361 LINRVLERQEIEGFGPAHALPESTLIAHGKDNKVKAVASQRKHRSAGKPTPRTGTGRDGR 420 Query: 423 TLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRD 482 ++ AQ + + + + + R +P+ +R Sbjct: 421 KTPDSIDGSAQQKNSNPNQGQRNNQGQHKRPQSSKNAEHKNTHSSTEAGRTPKPQDKRPQ 480 Query: 483 VG 484 G Sbjct: 481 HG 482 >UniRef50_O26305 ATP-dependent RNA helicase, eIF-4A family n=1 Tax=Methanothermobacter thermautotrophicus str. Delta H RepID=O26305_METTH Length = 425 Score = 566 bits (1461), Expect = e-160, Method: Composition-based stats. Identities = 174/429 (40%), Positives = 266/429 (62%), Gaps = 9/429 (2%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F++ + I AL+D+G+E +PIQA +P L+G DV+G AQTG+GKTAAF++P+L+N Sbjct: 6 FSEFDISGDINRALDDMGFESTTPIQALTLPVTLDGMDVVGEAQTGTGKTAAFAIPVLEN 65 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 L+ E + PQ L++ PTREL +QV+E + K+M+ V V+A+YGGQ Q+ LR+G Sbjct: 66 LEAE-RVPQALIICPTRELCLQVSEEIKRIGKYMK-VKVLAVYGGQSIGNQIAQLRRGVH 123 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 ++V TPGRL+DH++RGT+DL +S +VLDEADEML MGFI+D+E I++ +PE QT LFS Sbjct: 124 VIVATPGRLIDHIERGTVDLGGISTVVLDEADEMLNMGFIDDIERILSHVPERRQTMLFS 183 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 AT+ + I RI R++M+ PQ +R++ + P I + Y+ K E L L + + Sbjct: 184 ATVSKPILRIARKYMRNPQVMRVEKKHS--PKIDEFYFKTREEDKVELLDWILSSNNIRM 241 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 +IF TK + L R GY++ ++GD++Q+ RE+ +ER + G +L+ATDVAAR Sbjct: 242 GLIFCNTKRRVQRLRRQLNRMGYSADEIHGDLSQSKRERVMERFRRGDFSLLVATDVAAR 301 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 G+ V + VVNYD+P ++E YVHRIGRTGRAG +G++ V E LR I+ Sbjct: 302 GIHVPDVEAVVNYDLPFENEYYVHRIGRTGRAGSSGKSFTLVVGSEVHRLRRIQSFTGKR 361 Query: 368 IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAA 427 I + +P+ E + + +++ LES S+I + GE ++ A Sbjct: 362 IKQSNMPSPEEIRRGYEMDLREILRRNLESKTYSD-----SEILESLAGEGYSFRDISHA 416 Query: 428 LLKMAQGER 436 LL + + + Sbjct: 417 LLDVLESSK 425 >UniRef50_Q3AFI3 ATP-dependent RNA helicase, DEAD box family n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AFI3_CARHZ Length = 430 Score = 566 bits (1461), Expect = e-160, Method: Composition-based stats. Identities = 179/402 (44%), Positives = 260/402 (64%), Gaps = 2/402 (0%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F LGL P+L+A+NDLG+E P+PIQ E IP +L G +++G A TG+GKTAA+ LP+LQ Sbjct: 4 FKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQR 63 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 + KA Q+L++ PTRELA+QVA+ + K+++ V +A+YGGQ + Q+R LRQG + Sbjct: 64 IQRGKKA-QVLIVTPTRELALQVADEVAKLGKYLK-VRALAVYGGQAIERQIRGLRQGVE 121 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 ++VGTPGR+LDH+ R T +++ ++LDEADEML MGFI+D+E I+ + QT LFS Sbjct: 122 VIVGTPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQTLLFS 181 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 AT+P I+ I ++F+ + V++ T P I Q Y+ + K E LV L +E Sbjct: 182 ATLPAPIKTIIKKFLGGYKTVKLVGREKTVPAIRQVYYELPETEKIEGLVSILNSELPIQ 241 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 AI+F RTK EV E L GY + L+GDM+Q R QT++ K G+ ++L+ATDVAAR Sbjct: 242 AIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVATDVAAR 301 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 GLD+ +S V+N+DIP + ESY+HRIGRTGRAGR G+A+ + RER+LL+ IE + Sbjct: 302 GLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRERKLLKAIEEAINKR 361 Query: 368 IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSK 409 + LP L + R +K A K+ + Y + ++ Sbjct: 362 LKREILPEPVDLEEARFKKIAKKILDTITKGVPALYLEMAAR 403 >UniRef50_B4WCQ8 DEAD/DEAH box helicase domain protein n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WCQ8_9CAUL Length = 510 Score = 566 bits (1460), Expect = e-160, Method: Composition-based stats. Identities = 179/490 (36%), Positives = 271/490 (55%), Gaps = 9/490 (1%) Query: 2 AEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFS 61 TTF +GL +L+AL GY KP+PIQ + IP ++ G+D+LG+AQTG+GKTAAF+ Sbjct: 12 TAVSTTFESMGLNKALLQALASEGYTKPTPIQEKAIPDVMQGKDLLGIAQTGTGKTAAFA 71 Query: 62 LPLLQN-----LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYD 116 LP+L + P+ + ++LVL+PTRELA Q+ ++ + H+ G V ++GG +Y Sbjct: 72 LPILHRLAENRIAPKPRTTRVLVLSPTRELATQIGDSFKAYGAHL-GFRVAVIFGGVKYG 130 Query: 117 VQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQ 176 Q RAL+QG I+V PGRLLDH+++ LDLS LVLDEAD+ML +GFI+ + I+++ Sbjct: 131 AQERALQQGLDILVAAPGRLLDHIQQKNLDLSSTEILVLDEADQMLDLGFIKPIRQIVSR 190 Query: 177 IPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEAL 236 IP Q FSATMP I ++ +K+P +V++ TT ISQS V RK L Sbjct: 191 IPAKRQNLFFSATMPTEIGKLAGELLKDPVKVQVTPQSTTVQRISQSVVHVEQGRKRALL 250 Query: 237 VRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRL 296 ++ ++F +TK+ +VA LE G + A++G+ +Q RE+TL+ K G+L Sbjct: 251 TEMFSDPEYTRCLVFTKTKHGADKVAAYLEAGGVEAGAIHGNKSQPQRERTLDAFKKGKL 310 Query: 297 DILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRL 356 +L+ATD+AARG+DV+ +S VVN+++P E+YVHRIGRT RAG G A+ FV E +L Sbjct: 311 RVLVATDIAARGIDVDGVSHVVNFELPHVPEAYVHRIGRTARAGADGTAISFVAGDEMKL 370 Query: 357 LRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEG 416 L++IE+ + IP ++ N + LG+ A V ++ + + + Sbjct: 371 LKDIEKVTRQKIPAIDRRNDKALGQLDATIMATGVGKKATMPEREG-GERNEGGRGGRGR 429 Query: 417 EELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPR--DRNDRGPRGDRED 474 + + P + P P+ E G R ND + E Sbjct: 430 SRVPHRDGVRPEGGGQPHRQRRARPGETPAAPRPERAYNPLAGERVPSINDNAKPAEGEM 489 Query: 475 RPRRERRDVG 484 + R RR Sbjct: 490 KRRPRRRPSN 499 >UniRef50_A9GRX1 DeaD2 protein n=5 Tax=Bacteria RepID=A9GRX1_SORC5 Length = 478 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 165/372 (44%), Positives = 225/372 (60%), Gaps = 5/372 (1%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 FADL L P+L A+ GY P+PIQ + IP +L G D+LG AQTG+GKTAAF+LP+LQ Sbjct: 3 FADLKLIEPLLRAIEAEGYSAPTPIQQQAIPPILEGNDLLGCAQTGTGKTAAFALPILQR 62 Query: 68 LD----PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 L P ++LVL PTRELA QVAE+ T + K++ G+ ++GG Q+ ALR Sbjct: 63 LAQSGGPRQGGLRVLVLTPTRELAAQVAESFTTYGKNL-GLRTAVVFGGVGQRPQMEALR 121 Query: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183 +G ++V TPGRLLD +G +L LVLDEAD ML MGFI D+ ++A +PE QT Sbjct: 122 RGVDVLVATPGRLLDLCSQGIAPFGRLDTLVLDEADRMLDMGFIHDIRRVLAMLPERRQT 181 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAE 243 LFSATMP I ++ ++ P V + TT +I Q V K L L+ Sbjct: 182 LLFSATMPPDILKLANSILRSPVRVEVARIATTAENIDQRVVFVERSDKRAMLEHVLKDP 241 Query: 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 303 AI+F RTK+ V + L R + A++G+ +Q RE+ L K G +L+ATD Sbjct: 242 ALRRAIVFTRTKHGANRVVQQLSRARIEAVAIHGNKSQGARERALASFKQGTTSVLVATD 301 Query: 304 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 363 +AARG+D++ IS V+NYD+P ESYVHRIGRT RAG +G AL F ++ ER L +IER Sbjct: 302 IAARGIDIDDISHVINYDLPNIPESYVHRIGRTARAGASGVALSFCDSEERAYLADIERL 361 Query: 364 MKLTIPEVELPN 375 ++ +P + P Sbjct: 362 IQKRLPLLADPG 373 >UniRef50_C5SI45 DEAD/DEAH box helicase domain protein n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SI45_9CAUL Length = 605 Score = 565 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 203/625 (32%), Positives = 314/625 (50%), Gaps = 40/625 (6%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 TTF DLGL A +L L GY P+PIQA+ IP LLN D+LG+AQTG+GKTAAF+LP+L Sbjct: 2 TTFKDLGLSASLLSTLEKEGYHTPTPIQAQAIPILLNKHDLLGIAQTGTGKTAAFALPIL 61 Query: 66 QNLD-----PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 ++ P ++ ++LVL+PTRELA Q+A++ +SK + G+ + ++GG +Y Q + Sbjct: 62 HHILSNRIIPAPRSCRVLVLSPTRELATQIADSFKAYSKGL-GLQIATIFGGVKYGPQYK 120 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 AL+ G I+V TPGRL+DH+++ T+DL + LVLDEAD+ML MGFI+ + + +++P Sbjct: 121 ALQGGIDILVATPGRLIDHIEQKTIDLKAVEHLVLDEADQMLDMGFIKPIRQVASRLPAQ 180 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 Q FSATMP+ I + + P++V I TT ++Q + RK L Sbjct: 181 RQNLFFSATMPKEIAGLANELLTNPKKVEITPEATTAERVTQQVIFIEQQRKRALLSELY 240 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 E +IF RTK VA L+ G +AA++GD NQ+ RE+ L+ K GR+ L+ Sbjct: 241 ADEKLARTLIFTRTKRGADRVAAYLQAGGVEAAAIHGDKNQSQRERALQAFKAGRVRALV 300 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATD+AARG+DV+ ++ V+NY++P +E+YVHRIGRT RAG+ G ++ V + ER+LL++I Sbjct: 301 ATDIAARGIDVDNVTHVINYELPFVAEAYVHRIGRTARAGKEGHSITLVADDERKLLKDI 360 Query: 361 ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELD 420 ER + IP + +R+ + + L S ++ + ++ TA + D Sbjct: 361 ERITRQRIPSWD--------RRKDQALKLLDEAILASGQTEKPKTPDRVVEKTARHLDPD 412 Query: 421 LETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRER 480 E R + P R +R RD R G + +R R+ Sbjct: 413 AE-------------RVHKRSRNRPNRDERRGNGRDGDNSRGERTFGKKDAFGNRAERQA 459 Query: 481 RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFA----SHSTIELPKG 536 R + R + D + + E + R G+ F + PKG Sbjct: 460 RFERPERTERYDPMASDRAPTKA-----SREFPAAERAFGDKPRFDGPRGEKPRFDKPKG 514 Query: 537 MPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERREG 596 + R + D +P R G R G R + + + Sbjct: 515 ERP--FKKRDDARGEGRSD--TRTFDERPARPAAERAGERPTGERRVDERKKKPFGKSAS 570 Query: 597 GRGDGRRFSGERREGRAPRRDDSTG 621 G+ GR+ + + R + S G Sbjct: 571 GKLGGRKTNTKPRAHHNEPVNRSEG 595 >UniRef50_D2QGG1 DEAD/DEAH box helicase domain protein n=2 Tax=Bacteria RepID=D2QGG1_9SPHI Length = 485 Score = 565 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 147/372 (39%), Positives = 230/372 (61%), Gaps = 8/372 (2%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F++L L PIL+AL + GY P+PIQ + IP LL+ RD+LG AQTG+GKTAAF++P+LQ Sbjct: 3 FSELSLIDPILKALTEEGYTNPTPIQEKAIPILLSRRDLLGCAQTGTGKTAAFAIPILQL 62 Query: 68 LDPEL-------KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 L E + + L+L PTRELA+Q+AE+ T + +H+ + ++GG Q+ Sbjct: 63 LSEERSKSTGGPRRIKTLILTPTRELAIQIAESFTAYGRHL-NIRNTVIFGGVSQHSQVN 121 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 L+ G +++ TPGRLLD + +G + L + VLDEAD ML MGFI DV+ ++ ++P Sbjct: 122 TLKAGVDVLIATPGRLLDLMNQGFISLRDVQFFVLDEADRMLDMGFIHDVKKVITKLPTH 181 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 Q+ FSATMP + ++ + P +V + +T I Q+ + V K + LV L Sbjct: 182 RQSLFFSATMPPDVAKLADTILNNPAKVEVTPVSSTADTIEQAMYFVGKEDKRKLLVHIL 241 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 + ++ +A++F RTK+ +V + L + G + A++G+ +Q R++ L K +L+ Sbjct: 242 DDKNIKSALVFARTKHGADKVVKDLLKAGIGAEAIHGNKSQNARQRALSNFKSRETRVLV 301 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATD+AARG+DV+ +S V+NY++P E+YVHRIGRTGRAG G AL F + E LR+I Sbjct: 302 ATDIAARGIDVDELSHVINYELPNIPETYVHRIGRTGRAGHDGIALSFCDAEETEYLRDI 361 Query: 361 ERTMKLTIPEVE 372 + + +P ++ Sbjct: 362 HKLIGKRVPVID 373 >UniRef50_C6WW85 DEAD/DEAH box helicase domain protein n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WW85_METML Length = 576 Score = 565 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 198/623 (31%), Positives = 284/623 (45%), Gaps = 56/623 (8%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +F L L IL A+ + GY P+PIQA+ IP ++ G D++ AQTG+GKTA F LP L Sbjct: 2 SFESLNLNPAILRAIEETGYTTPTPIQAQAIPVVMEGHDLMASAQTGTGKTAGFMLPALN 61 Query: 67 NL----DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 L + + P+ILVL PTRELA QV EA + K +R V++ GG Y +Q + L Sbjct: 62 LLATPHESRSRGPRILVLTPTRELAAQVNEAARKYGKFLRA-RTVSIVGGMPYPLQNKLL 120 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 Q I+V TPGRLLDH++RG +DLS+L L+LDEAD ML MGF+ DVE I Q+ Q Sbjct: 121 SQPLDILVATPGRLLDHMERGRIDLSRLQMLILDEADRMLDMGFLPDVERICEQLSAERQ 180 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM-RKNEALVRFLE 241 T LFSAT+ I RI ++ +K P+ V++ + +I Q V M KN+ L L Sbjct: 181 TLLFSATLDGDIARIAQQILKNPKTVQVAAQKEKHANIEQRLHFVDDMTHKNKLLEHLLI 240 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 A + + IIF TK +AE L G+ +AAL+GDM Q R +TL +L+ G + +L+A Sbjct: 241 APEVNQTIIFTSTKRHADVLAEDLYAAGHKTAALHGDMTQGARNRTLTKLRHGDVKVLVA 300 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 TDVAARG+DV I+ V+NYD+P +E YVHRIGRTGRA G A+ F N +R LLR IE Sbjct: 301 TDVAARGIDVHGITHVINYDLPKFAEDYVHRIGRTGRANNTGIAISFASNMDRHLLRKIE 360 Query: 362 RTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEL-- 419 + + + E +++ + + ++ +++ + Sbjct: 361 QYTGNRLEASVIEGFEPKRPVKMDGPSGGRRDGHKAGGRGGFKSRDDRGGFGGRDGNRGD 420 Query: 420 DLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRE 479 + + ER R R+ R+ G +R +RP + Sbjct: 421 NRGGSRHESRGDNRSERPSFNRDSNESRGNRDSAPREVNGNSAGYAGRSDANRSERPAGD 480 Query: 480 R-RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMP 538 R R GD + G N +R G+ Sbjct: 481 RARSFGDRVAFDKSSGDRSR----------GNNAGAPNRSFGD----------------- 513 Query: 539 GEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERREGGR 598 + +P+ +R GR G + R R Sbjct: 514 -------------------SVAFGKKPYARDGQRSEGRNDRGAAPARRDGARNDSRSPAR 554 Query: 599 GDGRRFSGERREGRAPRRDDSTG 621 + APRR S Sbjct: 555 SG-FGGANAGAGNGAPRRSRSFA 576 >UniRef50_C7PD17 DEAD/DEAH box helicase domain protein n=139 Tax=root RepID=C7PD17_CHIPD Length = 492 Score = 564 bits (1454), Expect = e-159, Method: Composition-based stats. Identities = 163/506 (32%), Positives = 259/506 (51%), Gaps = 67/506 (13%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +F LGL P+L+AL++ GY P+PIQ + IPH+L+ RD+LG AQTG+GKTAAF++PLLQ Sbjct: 28 SFEQLGLIEPLLKALDNEGYTAPTPIQQQAIPHVLDTRDLLGCAQTGTGKTAAFAIPLLQ 87 Query: 67 NLDPE--------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQ 118 + + L+ + L+L PTRELA+Q+ E+ T + K + + + ++GG Q Sbjct: 88 LMHQDQQAQQRKGLRNIKALILTPTRELAIQIQESFTAYGKFL-DLKSLVIFGGVSQHPQ 146 Query: 119 LRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP 178 AL++G I++ TPGRLLD + + + L + VLDEAD ML MGF+ DV+ ++ ++P Sbjct: 147 TEALKKGVDILIATPGRLLDLISQNYITLRDIKYFVLDEADRMLDMGFVHDVQRVIVKLP 206 Query: 179 EGHQTALFSATMPEAIRRITRRFM-KEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALV 237 E Q+ FSATMP I+ + + + P +V + +T I+QS + V K L+ Sbjct: 207 EQRQSLFFSATMPPEIQTLAKAILRNNPAKVEVTPVSSTAETITQSMYFVNKNDKRNLLL 266 Query: 238 RFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLD 297 L+ + ++F RTK+ V + L + + A++G+ +Q R++ L K + Sbjct: 267 HILKDKAIKTLLVFTRTKHGADRVVKDLHKAEITAEAIHGNKSQNARQRALNNFKSQQTR 326 Query: 298 ILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLL 357 +L+ATD+AARG+D++ ++ VVNY++P E+YVHRIGRTGRAG G A+ F E E+ L Sbjct: 327 VLVATDIAARGIDIDELTHVVNYELPNVPETYVHRIGRTGRAGADGIAISFCEPEEKAFL 386 Query: 358 RNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGE 417 ++I + + IP + P G+ Sbjct: 387 KDILKLISREIP-------------------------------------VETEHPFHNGD 409 Query: 418 ELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPR 477 + L P AP + ++ RD +G RN +G R+ RP Sbjct: 410 SMALPA-----------------PKPAPQQKPKQQHPRDKKGGFSRNRQGVVQSRDARPG 452 Query: 478 RERRDVGDMQLYRIEVGRDDGVEVRH 503 + GR G + + Sbjct: 453 AGAGKPNSGKP---NGGRPQGGKPKD 475 >UniRef50_B8I5B1 DEAD/DEAH box helicase domain protein n=2 Tax=Clostridium RepID=B8I5B1_CLOCE Length = 542 Score = 564 bits (1454), Expect = e-159, Method: Composition-based stats. Identities = 179/479 (37%), Positives = 267/479 (55%), Gaps = 16/479 (3%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 TF +LG+ APIL+A++D+G++ P+ +Q++ IPH+LN D++ M++TGSGKTA F + Sbjct: 1 MNNTFNELGISAPILKAIDDMGFKTPTEVQSKAIPHILNNEDLIVMSKTGSGKTAVFGVS 60 Query: 64 LLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 +LQ +PE PQ L+L P RELAVQV + +K+++ A+YG +++ + L Sbjct: 61 ILQLTNPEEAGPQGLILTPARELAVQVDNDIRKMAKYLKH-KTTAIYGQHNINLETQILN 119 Query: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183 +G IV GTPGR+ DH+ GTL + LVLDEAD ML MGF++ V I+ +P+ T Sbjct: 120 KGVSIVTGTPGRVFDHISHGTLSTKNIRFLVLDEADRMLDMGFLDQVVRIVKTLPKERIT 179 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAE 243 LFSATMP I I +R+M P + I+S T I Q Y+ V KN L R L E Sbjct: 180 LLFSATMPPEIHNICKRYMNNPVTIEIESQTKTVDTIHQVYYRVNYNEKNTQLNRLLIVE 239 Query: 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 303 ++ +IF TK A V L + GY+S AL+GD+ Q+ R T+++ K G+ IL+ATD Sbjct: 240 KPESCMIFCNTKAAVDRVQSFLGKKGYSSRALHGDIPQSKRLNTIQQFKQGKFHILVATD 299 Query: 304 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 363 VAARG+ +E +SLV+NYD+P D ++YVHRIGRTGRAG GRA V + L IE Sbjct: 300 VAARGIHIEDLSLVINYDVPNDKDNYVHRIGRTGRAGHEGRAFSLVTGDDIISLYEIEEH 359 Query: 364 MKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLET 423 + I E ELP+ E K R E Q ++++ L + + + + + Sbjct: 360 IGTLILEEELPDEEAFTKAREE-----AAQWIKANSLKEKAPRSASADSSVKQKRTG--- 411 Query: 424 LAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRD-RNDRGPRGDREDRPRRERR 481 + ++ R P+ RP + R + R++R + ++ R Sbjct: 412 ------QNSKSNRIPNGRPEYSKRPDGQSRHTGKSASSEQRSERIKSVNTVHSDKQPGR 464 >UniRef50_UPI00016C0D94 ATP-dependent RNA helicase n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0D94 Length = 472 Score = 562 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 160/491 (32%), Positives = 255/491 (51%), Gaps = 24/491 (4%) Query: 80 LAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDH 139 L PTRELAVQ+A M H + + ++A+YGG+ + QL LR+ PQIVVGTPGR++DH Sbjct: 2 LCPTRELAVQIATEMKKICAHKKDIGILAVYGGESIEKQLAGLRRRPQIVVGTPGRVMDH 61 Query: 140 LKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITR 199 ++R TL L L LVLDEADEML MGF ED++TI+ IPE Q LFSAT+P+AI I Sbjct: 62 MRRKTLKLGALKMLVLDEADEMLNMGFREDIDTILESIPENRQFLLFSATLPKAIMEIAN 121 Query: 200 RFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATL 259 ++ ++ T ISQ Y V +K+E L R +++ +F ++F TK Sbjct: 122 KYQTNAVKINTTKKQVTVKTISQHYLDVNEKKKSEVLARLIDSNNFKLMLVFCNTKKRVD 181 Query: 260 EVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVN 319 ++ + L GY + AL+GDM Q R+ + + + G +DILIATDVAARG+D++ + V N Sbjct: 182 DLCKDLMSRGYKAEALHGDMKQIHRDSVMNKFRRGIVDILIATDVAARGIDIDDVDAVFN 241 Query: 320 YDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELL 379 YD+P+D E YVHRIGRTGRA R G + FV +E LR IER I ++ +P + + Sbjct: 242 YDLPIDDEYYVHRIGRTGRANRKGTSYSFVCGKEIYKLRQIERYTNSKITKITIPTMDDI 301 Query: 380 GKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGE----ELDLETLAAALLKMAQGE 435 ++ +++++++ + A +++I E ++ +AAA L +A + Sbjct: 302 KGNKVNSILDEIKEEIKEGKITTNLAFITQIAQELNAECEELDITSTEVAAAFLNVAMKK 361 Query: 436 RTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDMQLYRIEVGR 495 G R + + + + I +G Sbjct: 362 MV--------------------TGSNPRVKLADLEHEDKKTTTYGYNEKGYKRLFINLGN 401 Query: 496 DDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPM 555 D +E +V +A+ +S + IG I + S +E+P E++ + + + + Sbjct: 402 KDKLESSQLVKFVASNTSVSGKEIGKIDMLDKFSFLEVPAKYVDELIAVLPKKKFKGRKV 461 Query: 556 NMQLLGDAQPH 566 N+++ + Sbjct: 462 NIEVANKKKKK 472 >UniRef50_C8WFI7 DEAD/DEAH box helicase domain protein n=3 Tax=Zymomonas mobilis RepID=C8WFI7_ZYMMN Length = 506 Score = 562 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 169/454 (37%), Positives = 249/454 (54%), Gaps = 4/454 (0%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 + + +FADLGL +L+A+ +LGYE+P+P+QA IP +L RD++ +AQTG+GKTA+F Sbjct: 10 LVRYFMSFADLGLSKELLQAVAELGYEEPTPVQAAAIPSVLMMRDLIAVAQTGTGKTASF 69 Query: 61 SLPLLQNLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDV 117 LP++ L + P+ L+L PTRELA QVAE + K+ +++ L GG Sbjct: 70 VLPMIDILAHGRCRARMPRSLILEPTRELAAQVAENFEKYGKY-HKLSMSLLIGGVPMAE 128 Query: 118 QLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQI 177 Q AL +G +++ TPGRLLD +RG + LS LV+DEAD ML MGFI D+ETI ++ Sbjct: 129 QQAALEKGVDVLIATPGRLLDLFERGKILLSSCEMLVIDEADRMLDMGFIPDIETICTKL 188 Query: 178 PEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALV 237 P QT LFSATMP AI+++ RF+ P+++ I T I Q V K + L Sbjct: 189 PTSRQTLLFSATMPPAIKKLADRFLSNPKQIEISRPATANTLIDQRLIEVSPRSKKKKLC 248 Query: 238 RFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLD 297 L AE AIIF K ++A LE+ G++ ++GDM+Q R LER K+G++ Sbjct: 249 DMLRAEKDHTAIIFCNRKTTVRQLATTLEQQGFSVGQIHGDMSQPERGSELERFKNGQIS 308 Query: 298 ILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLL 357 +L+A+D+AARGLDV+ IS V N+D+P + Y+HRIGRTGR G +G AL FV + + Sbjct: 309 VLVASDIAARGLDVKGISHVFNFDVPTHPDDYIHRIGRTGRGGASGEALTFVTPADEEAI 368 Query: 358 RNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGE 417 IE+ M + IP + + E + K + ++ + T + Sbjct: 369 TAIEKLMGVEIPRLGNRKKNAYPSKSEETVSPKQAKPVQEKSAASSPRKAPRKTETPKKL 428 Query: 418 ELDLETLAAALLKMAQGERTLIVPPDAPMRPKRE 451 D + Q R P + R + Sbjct: 429 PEDRLDSVESDFPKNQAPRNTASRPVSKARTQER 462 >UniRef50_A9KIB7 DEAD/DEAH box helicase domain protein n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KIB7_CLOPH Length = 514 Score = 561 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 145/367 (39%), Positives = 224/367 (61%), Gaps = 2/367 (0%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 F ++ L P+L+A+ + G+ +PSPIQ + IP +L GRD+LG AQTG+GKTAAF+LP+LQ Sbjct: 2 NFNEMNLIKPLLQAIKEEGFIEPSPIQKKTIPLVLEGRDILGCAQTGTGKTAAFALPILQ 61 Query: 67 NLDP-ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 +L E + L++ PTRELA+Q+ E+ F K+ + +YGG +Q+ +L+ G Sbjct: 62 SLSKGEGSGVRALIITPTRELAIQIYESFECFGKYT-SLKQSVIYGGVGQSLQVNSLKAG 120 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 I++ TPGRL D + +G + L + VLDEAD+ML MGF+ D++ ++ +P+ QT L Sbjct: 121 IDILIATPGRLNDLIGQGYITLDAIEMFVLDEADQMLDMGFLNDIKKVIKLLPKTRQTLL 180 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSATMP+ I + + P+ ++I +T I QS + V + K L ++ Sbjct: 181 FSATMPKEIESLATNLLNNPEIIKISPVTSTVDSIEQSVYFVDRLNKISLLTSLIKEHKM 240 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 ++F +TK+ VA+ L + + A++G Q R+ L K+G++ +L+ATD+A Sbjct: 241 SRVLVFTKTKHGADRVADKLNKAKVKTQAIHGGKGQNARQTALSDFKEGKIKVLVATDIA 300 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARG+D+ +S VVNYDIP +E Y+HRIGRTGRAG G A+ + LR IE+ + Sbjct: 301 ARGIDISELSYVVNYDIPNQAEIYIHRIGRTGRAGLGGNAINLCNIDDMDYLREIEKHIG 360 Query: 366 LTIPEVE 372 + IPEV Sbjct: 361 MVIPEVP 367 >UniRef50_B0SEU1 Superfamily II DNA and RNA helicase n=5 Tax=cellular organisms RepID=B0SEU1_LEPBA Length = 471 Score = 561 bits (1446), Expect = e-158, Method: Composition-based stats. Identities = 149/374 (39%), Positives = 231/374 (61%), Gaps = 6/374 (1%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 M + TF+DL L I +A+ + GY KP+PIQ + IP LL+ D+LG AQTG+GKTAAF Sbjct: 1 MQKQIETFSDLKLDRYIQKAVAETGYTKPTPIQIQAIPLLLDNHDLLGCAQTGTGKTAAF 60 Query: 61 SLPLLQNL-----DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRY 115 +LP++ NL P K P+ LVL PTRELA+QV E+ + K+ + + ++GG Sbjct: 61 ALPMIHNLISTRAKPNPKQPRSLVLVPTRELAIQVHESFVLYGKYTQ-IRTAVIFGGVGQ 119 Query: 116 DVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMA 175 + Q +A+ G +++ TPGRL+D + + + L L VLDEAD ML MGFI D+ I++ Sbjct: 120 NPQAKAIASGLDVLIATPGRLVDLMNQNLVSLKNLEIFVLDEADRMLDMGFIHDIRKIIS 179 Query: 176 QIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA 235 +P+ Q FSATMP I ++ + EP + + +T ISQS K Sbjct: 180 YLPKRRQNLFFSATMPPEIEKLANSILVEPIRIDVTPVSSTVELISQSVMYTELADKKNL 239 Query: 236 LVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGR 295 L+ + ++F IIF +TK+ +++E L ++G + ++G+ +Q+ R++ LE + G+ Sbjct: 240 LLHLFKDKNFKKTIIFTKTKHGANKISELLNKSGIKTDVIHGNKSQSARQRALEDFRSGK 299 Query: 296 LDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERR 355 L+ATD+AARG+D++ I+ V+NY+IP E+YVHRIGRT RAG+ G A+ E ER Sbjct: 300 NRALVATDLAARGIDIDDITHVINYEIPYVPETYVHRIGRTARAGKNGIAIAIAEADERS 359 Query: 356 LLRNIERTMKLTIP 369 L+++IE+ + ++IP Sbjct: 360 LIKDIEKVIGISIP 373 >UniRef50_A7IK90 DEAD/DEAH box helicase domain protein n=36 Tax=Alphaproteobacteria RepID=A7IK90_XANP2 Length = 559 Score = 561 bits (1446), Expect = e-158, Method: Composition-based stats. Identities = 177/522 (33%), Positives = 267/522 (51%), Gaps = 23/522 (4%) Query: 2 AEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFS 61 ++ T+F++LGL PI+ AL + + P+PIQAE IP +L GRD++G+AQTG+GKTAAF+ Sbjct: 33 SQSLTSFSNLGLAEPIVRALTEAQHVTPTPIQAEAIPQILAGRDLIGIAQTGTGKTAAFA 92 Query: 62 LPLLQNL-----DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYD 116 LP+L L PE K+ + LVL+PTREL+ Q+ E F +H ++V GG Sbjct: 93 LPILDRLVRHPHRPEPKSVRALVLSPTRELSGQIVENFEKFGRHA-NISVSLAIGGVPMG 151 Query: 117 VQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQ 176 Q+RAL +G ++V TPGRL+D ++ + L ++ LVLDEAD+ML MGF+ + I+ + Sbjct: 152 RQIRALSRGVDVLVATPGRLIDLVENHAVKLDQVEVLVLDEADQMLDMGFVHAIRAIVRR 211 Query: 177 IPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEAL 236 +P + FSATMP AI + +++P V + T + Q V K + L Sbjct: 212 LPHKRHSLFFSATMPHAIAELAGSMLRDPVRVAVTPVAKTADRVEQRVILVDKANKGQLL 271 Query: 237 VRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRL 296 L ED D A++F RTK+ +V L + G + A++G+ +Q R++ L ++G++ Sbjct: 272 AEVLSTEDIDRALVFSRTKHGADKVVRVLAKAGIAAEAIHGNKSQNQRDRVLAAFREGKI 331 Query: 297 DILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRL 356 LIATD+AARG+DV +S V+N+D+P ESYVHRIGRT RAGR G A+ F ++ ER Sbjct: 332 RTLIATDIAARGIDVTGVSHVINFDLPNVPESYVHRIGRTARAGREGIAISFCDHEERAF 391 Query: 357 LRNIERTMKLTIP---------EVELPNAELL-------GKRRLEKFAAKVQQQLESSDL 400 LR+IE+ +K+ +P +P E + R + +Q Sbjct: 392 LRSIEKLIKMQLPSSDRRGAGTRFAVPELEPIILDERDETSERSDYIGRSGRQNPRGQRP 451 Query: 401 DQYRALLSKIQPTAEGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGP 460 + + A E A A +G P P + P Sbjct: 452 RHGDERSGEGRSRAPRSEEGRPQAARAHQPRGEGRPAGGRPEGRPDAGGAQGAGHRAGQP 511 Query: 461 RDRNDRGPRGDREDRPRRERRDVGDMQLYRIEVGRDDGVEVR 502 RG R +R RP + +G MQ G+ Sbjct: 512 ARAEGRGQRTERGQRPAGDIGGLGFMQSVP-NRGQRSDSRPG 552 >UniRef50_C6XMJ7 DEAD/DEAH box helicase domain protein n=23 Tax=Bacteria RepID=C6XMJ7_HIRBI Length = 769 Score = 560 bits (1445), Expect = e-158, Method: Composition-based stats. Identities = 192/524 (36%), Positives = 282/524 (53%), Gaps = 32/524 (6%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 T F+D L +P+L+AL+ GYE P+PIQA+ IP ++ G D+LG+AQTG+GKTAAF+LPLL Sbjct: 2 TKFSDFDLASPVLKALDKEGYETPTPIQAQAIPLVMEGGDILGIAQTGTGKTAAFALPLL 61 Query: 66 QNL-----DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 +L P A + LV+APTRELA Q+AEA + + + + + V+ ++GG Q+R Sbjct: 62 HHLCKLPDMPGPGAVRCLVIAPTRELASQIAEAFSKYGQCL-SLRVLKVFGGVPIRKQMR 120 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 L +G ++V TPGRL+D +++G +DLS + LVLDEAD+ML +GFI + I A +P+ Sbjct: 121 DLHRGADVLVATPGRLIDLMEQGAVDLSYVEKLVLDEADQMLDLGFIHPLRRIAAAVPKE 180 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 QT FSATMP + + +F+ P++V I TT ++Q+ V +K L+ L Sbjct: 181 RQTLFFSATMPSNVSGLANQFLTNPKKVSIAQESTTAERVTQTMSHVNQAQKGPLLLVNL 240 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 + E D A++F RTK+ +V L G A++G+ +QA RE+ L ++G +L+ Sbjct: 241 QDESIDRALVFTRTKHGADKVVSKLMNAGIRCGAIHGNKSQAQRERALNAFRNGDSKVLV 300 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATD+AARG+DV +S V NY+IP E YVHRIGRT RAGR G+A+ FV E++ L +I Sbjct: 301 ATDIAARGIDVPGVSHVFNYEIPNVPEQYVHRIGRTARAGREGKAISFVSRDEKKYLLDI 360 Query: 361 ERTMKLTIPEVELPNA----------------ELLGKRRLEKFAAKVQQQLESSDLDQYR 404 +R +++ IP V+LP E + R + A+ + D R Sbjct: 361 QRQIRMKIPIVDLPEGFIDQAEEITANATPVIEERPRGRGGRDGARGGRDGGRGGRDGGR 420 Query: 405 ALLSKIQPTAEGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRD-- 462 + +G E +G D P R +R FR PR Sbjct: 421 GGRDGGRGGRDGGRGRSEGRGGRDGGGYKGRDDRPQREDRPQREERPFRAEASSEPRYEG 480 Query: 463 RNDRGPRGDREDRPRRERRDVGDMQLYR--------IEVGRDDG 498 R DR R + +R R RD + R GR D Sbjct: 481 RQDRFKRSEGGERQERPNRDDRFARRERPEGERSEGRSEGRRDN 524 >UniRef50_D2MPZ3 Putative ATP-dependent RNA helicase RhlE n=1 Tax=Bulleidia extructa W1219 RepID=D2MPZ3_9FIRM Length = 425 Score = 559 bits (1442), Expect = e-157, Method: Composition-based stats. Identities = 161/364 (44%), Positives = 221/364 (60%), Gaps = 2/364 (0%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 TF + L+ P+L++L Y+KPSPIQ + IP LL G D++ AQTG+GKTA F+LP+L Sbjct: 2 TFNEFNLRKPLLDSLAKASYKKPSPIQEKGIPILLEGSDLIACAQTGTGKTATFALPILN 61 Query: 67 NLDPELK-APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 +L E + + L+L PTRELA Q+ E + F ++M + +YGG QL+A+R G Sbjct: 62 SLSKEKNHSIRALILTPTRELATQIFENIKMFGRYMH-LRACCVYGGSPAAPQLKAIRSG 120 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 I++ TPGRLLD+L G + L + LVLDEAD ML MGFI DV I+ QIP TAL Sbjct: 121 CDILIATPGRLLDYLAHGKISLRHIEFLVLDEADRMLDMGFIADVRKIVQQIPNDRITAL 180 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSATMP+ I+ + R +K P+EVRI++ T I Q K + LV L E Sbjct: 181 FSATMPKEIQELARDILKNPKEVRIEAEKFTASTIDQYLIYTEKSSKKKVLVNLLNTESI 240 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 I+F RTK + + L+ ++GD Q R L+R + ++ ILIATDVA Sbjct: 241 KKTIVFTRTKIGADRLEKYLKEKEIACLVIHGDKTQGQRLNALQRFRTNQIRILIATDVA 300 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARG+D++ IS V+N+D+P D E+YVHRIGRTGRA + G ++ V E LL NIE ++ Sbjct: 301 ARGIDIKDISHVINFDLPEDIENYVHRIGRTGRAKQEGVSISLVCKEELNLLANIESYIQ 360 Query: 366 LTIP 369 IP Sbjct: 361 FQIP 364 >UniRef50_Q2BP56 Putative ATP-dependent RNA helicase n=1 Tax=Neptuniibacter caesariensis RepID=Q2BP56_9GAMM Length = 427 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 160/421 (38%), Positives = 250/421 (59%), Gaps = 5/421 (1%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 ++FA+L L + L +LGYE+P+PIQ++ IP +L G D+L AQTG+GKTA+F+LP++ Sbjct: 4 SSFAELALCPELQFTLKNLGYEQPTPIQSQAIPLVLRGDDLLAEAQTGTGKTASFALPII 63 Query: 66 QNLDPEL----KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 + L + + LVLAPTRELA+QVA+ ++ + + G+ V+++YGG + Q++ Sbjct: 64 EKLSKNPIDGYRPVRALVLAPTRELAIQVADNTLEYGRDL-GMRVISVYGGVPVENQIKR 122 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 L++G I+V TPGRLLD L++ + L KL LVLDEAD ML +GFI+ ++ IM + Sbjct: 123 LKRGTDILVATPGRLLDLLRQKAISLEKLEYLVLDEADRMLDLGFIDPIQKIMDYAADDR 182 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 QT LF+AT E++ + ++ P ++++ +T I Q + V +K + L + Sbjct: 183 QTLLFTATADESVEVLAEFYLNNPTKIKVTPRNSTAKQIRQFAYQVDYGQKADILSYLIT 242 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 + ++FVRTK E+ + L + G N+AA++G+ +Q R + L G L +L+A Sbjct: 243 EGKWGQTLVFVRTKKRVDELTQYLCKEGINAAAIHGEKSQRERVRMLNEFIAGDLHVLVA 302 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 TDVAARGLD+E + VVNYD+P E+YVHRIGRTGRAG G A+ V ER L+ IE Sbjct: 303 TDVAARGLDIESLPYVVNYDLPNQPEAYVHRIGRTGRAGETGEAVSLVAPAEREFLQRIE 362 Query: 362 RTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDL 421 + +K I +P E + ++ FA K ++ + Q R + QP + + Sbjct: 363 KLIKQKIKLRPVPRIEDGKRLEIDDFADKPMKRKPAKAKQQKRKKVESYQPDKSKKAIRP 422 Query: 422 E 422 Sbjct: 423 S 423 >UniRef50_A6TTG0 DEAD/DEAH box helicase domain protein n=28 Tax=Firmicutes RepID=A6TTG0_ALKMQ Length = 549 Score = 558 bits (1440), Expect = e-157, Method: Composition-based stats. Identities = 184/503 (36%), Positives = 274/503 (54%), Gaps = 10/503 (1%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 + FA LG+ I LN +P+P+Q + IP LL RDV+ AQTG+GKT AF LP Sbjct: 1 MKNKFAKLGISEEIENVLNKSDITEPTPVQLQAIPPLLAQRDVMAQAQTGTGKTLAFILP 60 Query: 64 LLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 +L+ ++ E Q L++ PTRELA+Q+ ++ ++G+N++A YGGQ + QLR L+ Sbjct: 61 ILERVNVEKPTIQALIITPTRELAIQITAETKKLAE-VKGINILAAYGGQDVEQQLRKLK 119 Query: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183 I++GTPGRLLDHL+R T++L KLS LVLDEAD+ML MGF+ DVE IM IP+ Q Sbjct: 120 GSIHIIIGTPGRLLDHLRRKTINLGKLSMLVLDEADQMLHMGFLRDVEDIMTHIPKRRQN 179 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAE 243 FSATMP +R + ++MK+P ++++QS T +I Q K + L + + Sbjct: 180 MFFSATMPNQVRTLAEQYMKDPVQIQVQSKRVTLDEIRQVVIETTDRGKQDLLCQLFDEY 239 Query: 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 303 + AIIF RTK + + EAL GYNS L+GD+ QA RE+ ++ K ++ L+ATD Sbjct: 240 NPFMAIIFCRTKRRAIALNEALINLGYNSDELHGDLTQAKREKVMKAFKKSKIQYLVATD 299 Query: 304 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 363 VAARGLD+E ++ + NYDIP D ESY+HRIGRTGRAG G A+ F+ +R+R L+ IE+ Sbjct: 300 VAARGLDIEGVTHIFNYDIPQDGESYIHRIGRTGRAGETGMAITFMTSRDRDELKIIEKV 359 Query: 364 MKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLET 423 +K+ + + + ++ + + + D + + ++ Sbjct: 360 IKMDLDVQKSKSGKIDLDEEEQDTKKSPKGRGNDKSKDFKKGKYGDKKGKPGDKKGRPGD 419 Query: 424 LAAALL-KMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRD 482 K + P D RP + D R +++G GD + RP + Sbjct: 420 KRDRPTDKKGRPGDKRDRPSDNKGRPGDKRDRPSDNKGRPGDNKGRPGDNKGRPGDNKGR 479 Query: 483 VGDMQLYRIEVGR--DDGVEVRH 503 GD GR D+ Sbjct: 480 PGD------NKGRPGDNKGRPGD 496 >UniRef50_Q17W71 ATP-dependent RNA helicase n=19 Tax=Helicobacter RepID=Q17W71_HELAH Length = 494 Score = 558 bits (1440), Expect = e-157, Method: Composition-based stats. Identities = 166/480 (34%), Positives = 267/480 (55%), Gaps = 13/480 (2%) Query: 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 + +F DLGLK +L+++ + G+ PSPIQ + IP +L GRDV+ AQTG+GKTAAF+LP+ Sbjct: 21 KPSFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPI 80 Query: 65 LQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 + NL + LV+ PTRELA+Q+++ + KH + V +YGGQ Q +++ Sbjct: 81 INNLK-NNHTIEALVITPTRELAMQISDEIFKLGKHTK-TKTVCVYGGQSVKKQCEFIKK 138 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 PQ+++ TPGRLLDHLK + +VLDE+DEML MGF++D+E I +P Q Sbjct: 139 NPQVMIATPGRLLDHLKNDRIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQIL 198 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 LFSATMPE I+++ + ++ P ++ I S T DI+Q ++ + ++EA++ L+ + Sbjct: 199 LFSATMPEPIKKLADKILENPIKIHIAPSNITNTDITQRFYVINEHERSEAIMHLLDTQA 258 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 + +I+F RTK E+ + L Y S AL+GDM+Q R ++ K D+L+ATDV Sbjct: 259 PEKSIVFTRTKKEADELHQFLISKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV 318 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 A+RGLD+ +S V NY +P+++ESY+HRIGRTGRAG+ G A+ V E + L +++ + Sbjct: 319 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 378 Query: 365 KLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETL 424 I E+P + + ++ K + + + Y L +P+ +L Sbjct: 379 DSEIELFEIPT---INENQIIKTLHGAK--VSEGVISLYEQLTEIFEPSQLILKLLSLQF 433 Query: 425 AAALLKMAQGE-----RTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDR-EDRPRR 478 + + Q E P P + + D+ P+ +R +P+R Sbjct: 434 ETNKIGLNQQEIDAIQNPKERVPKPPHKKTHKTEQAHSFKKSRHRDKYPKTNRYSKKPKR 493 >UniRef50_B7VQT9 ATP-dependent RNA helicase n=15 Tax=Bacteria RepID=B7VQT9_VIBSL Length = 523 Score = 558 bits (1438), Expect = e-157, Method: Composition-based stats. Identities = 162/484 (33%), Positives = 259/484 (53%), Gaps = 13/484 (2%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +F LGL PIL+A+ GY+KPSPIQ + +P +L G+DV+ AQTG+GKTA F+LP+L+ Sbjct: 2 SFTSLGLSEPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPILE 61 Query: 67 NLDPELK----APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 L + + LVL PTRELA QV ++ + ++ + ++GG + + Q++ L Sbjct: 62 MLSKGPRVRQNQVRALVLTPTRELAAQVNGSVVKYGINLP-LTSTVVFGGVKINPQMQKL 120 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 R+G ++V TPGRLLD + + +L LVLDEAD ML MGFI D+ I+A +P+ Q Sbjct: 121 RKGSDVLVATPGRLLDLYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRKILAFLPKKRQ 180 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 LFSAT + IR + + + P E+ + + +T P + QS + V +K L + ++ Sbjct: 181 NLLFSATFSDDIRSLAKGLVNNPVEISVSPANSTAPTVEQSIYPVDKKKKAPMLAKLIKD 240 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 D+ ++F +TK+ ++A LE SA ++G+ +Q R + LE K G++ +L+AT Sbjct: 241 NDWRQVLVFSKTKHGANKLARFLEEQDITSAPIHGNKSQGARTKALENFKTGKVRVLVAT 300 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 D+AARG+D+ ++ VVN+D+P SE YVHRIGRTGRAG G+A+ V E L IER Sbjct: 301 DIAARGIDIPQLPQVVNFDLPNVSEDYVHRIGRTGRAGEVGKAISLVCADEVGELFGIER 360 Query: 363 TMKLTIPEVELPNAELLGKRRLEKFAAK------VQQQLESSDLDQYRALLSKIQPTAEG 416 ++ + EL + K + ++ ++ E SD + +P + Sbjct: 361 LIQQVLERRELEGFAPVNKLPESRLDSRPIKPKKPKKTREHSDGQRSGENARGHKPAGKN 420 Query: 417 EELDLETLAAALLKMAQGERTLIVPPDAPMRPK--REFRDRDDRGPRDRNDRGPRGDRED 474 + +A K G + A K R RG + + + Sbjct: 421 KRHVAGNGSAPKRKPNSGNKASDSNSAAAGDDKSLRNNGSNYKRGNKPSTNSSGKPGGAG 480 Query: 475 RPRR 478 +P++ Sbjct: 481 KPKK 484 >UniRef50_C0ZI64 Putative ATP-dependent RNA helicase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZI64_BREBN Length = 493 Score = 556 bits (1435), Expect = e-157, Method: Composition-based stats. Identities = 175/483 (36%), Positives = 273/483 (56%), Gaps = 11/483 (2%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 +FA G + +++ + DL Y++P+ IQ E IP ++ G+D++G AQTG+GKTAAF LP Sbjct: 1 MAKSFASFGFRPELMQGIQDLYYKEPTQIQEEAIPLIMEGKDLIGQAQTGTGKTAAFMLP 60 Query: 64 LLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 +L LD + Q L+L PTREL++Q+A+ + KH+ VNV++L+GG D QL L+ Sbjct: 61 ILNALDEGKRDIQALILTPTRELSIQIAKEVEKLGKHL-NVNVLSLHGGTDIDKQLSKLK 119 Query: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183 + QIVVGTPGR+LDH+KRG+L ++S LVLDEAD+M+ MGF+EDVE ++ P Q Sbjct: 120 ETVQIVVGTPGRVLDHMKRGSLHFGRISTLVLDEADKMMEMGFLEDVEQVIVHTPSQRQV 179 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAE 243 LFSATMP+ ++++ RFMK+P ++I+ T I Q Y+ V K +ALV LE E Sbjct: 180 LLFSATMPDLVKKLAHRFMKQPPHIKIEGKQKTVERIEQFYYVVNQSDKTDALVDVLEQE 239 Query: 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 303 I+F T+ ++ L+ NG ++ AL GD++Q REQ +++ ++ R LIATD Sbjct: 240 QPFLTIVFANTQVRVQQLTARLQENGLSAKALYGDLSQNKREQLMKQFREIRFQFLIATD 299 Query: 304 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 363 +AARGLDVE ++ V+NYD+P D +SY+HR+GRTGRAG+ G+A+ + R++ L+ + Sbjct: 300 IAARGLDVEGVTHVINYDLPNDVDSYIHRVGRTGRAGQKGKAISLISPRQKNLMARFAKA 359 Query: 364 MKLTIPEVELPNAELLGKRRLEKFAAKVQQQLE----------SSDLDQYRALLSKIQPT 413 K +I E L L R ++ + +E ++ + I+ Sbjct: 360 TKASIEERILQEGRHLDAGRRQRAEEREAHFIELRAQQAKEQQKEKDKEFSPVREAIKKK 419 Query: 414 AEGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDRE 473 + + + +A L + +A K + + R + Sbjct: 420 TKVKPGYKKKMARELGDLQTQYEKNRKKAEAIAARKAGKSAKPADAKKAGKGGAARSAKG 479 Query: 474 DRP 476 RP Sbjct: 480 GRP 482 >UniRef50_B8ILJ8 DEAD/DEAH box helicase domain protein n=10 Tax=Alphaproteobacteria RepID=B8ILJ8_METNO Length = 506 Score = 556 bits (1434), Expect = e-157, Method: Composition-based stats. Identities = 159/376 (42%), Positives = 231/376 (61%), Gaps = 8/376 (2%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 T F D GL API++AL + GY P+PIQA+ +P + GRD+ G+AQTG+GKTAAF+LP+L Sbjct: 2 TQFVDFGLAAPIMKALAETGYVTPTPIQAQAVPPAMTGRDLCGIAQTGTGKTAAFALPIL 61 Query: 66 QNLDPE-------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQ 118 L E + ++LVL+PTRELA Q+A++ D+ K + + ++GG Q Sbjct: 62 HRLASETPAKRAPRRGCRVLVLSPTRELASQIADSFRDYGKFLP-FSTTVVFGGVTIGRQ 120 Query: 119 LRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP 178 RAL G ++V TPGRLLD + R +L L + LVLDEAD+ML +GFI ++ I+ +P Sbjct: 121 ERALANGIDVLVATPGRLLDLVDRRSLSLDSVEYLVLDEADQMLDLGFIHALKRIVTLLP 180 Query: 179 EGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVR 238 + Q+ FSATMP+ I + +++++P +V + TT + Q V K L Sbjct: 181 KARQSLFFSATMPKNIATLAAQYLRDPVQVAVTPVATTAERVEQRVIHVSTGAKQALLGT 240 Query: 239 FLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDI 298 L E D ++F RTK+ V LE+ G SAA++G+ +Q RE+ L + G + Sbjct: 241 ILRDESIDRVLVFTRTKHGADRVVRGLEKVGIGSAAIHGNKSQPQRERALAAFRAGTCRV 300 Query: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLR 358 L+ATD+AARG+DVE ++ VVN+D+P E+YVHRIGRT RAG G A+ F ER LR Sbjct: 301 LVATDIAARGIDVEGVTHVVNFDLPNVPEAYVHRIGRTARAGADGLAISFCNEEERAYLR 360 Query: 359 NIERTMKLTIPEVELP 374 +IER + +PE+ +P Sbjct: 361 DIERLTRQKVPEMAIP 376 >UniRef50_C1D673 RhlE3 n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D673_LARHH Length = 582 Score = 555 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 174/505 (34%), Positives = 258/505 (51%), Gaps = 22/505 (4%) Query: 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 +FADL L P+L A+ + GY +P+PIQ E I +L GRD++ AQTG+GKTA F+LPL Sbjct: 3 SISFADLQLVDPLLRAITEAGYTEPTPIQREAIAPVLAGRDLMAAAQTGTGKTAGFALPL 62 Query: 65 LQNLDP------ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQ 118 LQ L P+ LVL PTRELA QV E++ H+ + + ++GG R Q Sbjct: 63 LQRLAATHPHPHPAGRPRGLVLTPTRELAAQVGESIATLGTHLP-LTSLVIFGGVRVKPQ 121 Query: 119 LRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP 178 + AL Q I++ TPGRL+D K+ +DLS + LVLDEAD ML MGFI DV ++ +P Sbjct: 122 IEALTQRVDILIATPGRLIDLAKQEAVDLSGVEILVLDEADRMLDMGFIRDVRKVLKLLP 181 Query: 179 EGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVR 238 Q LFSAT + I+ + F+ +PQ V + +T ++ V RK E L Sbjct: 182 AERQNLLFSATFNDDIKALADTFLHDPQLVEVSPPNSTTELVTHHVHLVDRNRKRELLTH 241 Query: 239 FLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDI 298 +E+ + ++F RTK+ +AE L + G +AA++G+ +Q R + L KDG L + Sbjct: 242 LVESRQWQQVLVFTRTKHGANRLAEVLAKGGIPAAAIHGNKSQGARTRALSEFKDGSLRV 301 Query: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLR 358 L+ATD+AARG+D+ + VVNY++P E YVHRIGRTGRAG G A+ V E +LL Sbjct: 302 LVATDIAARGIDISELPQVVNYELPNVPEDYVHRIGRTGRAGSPGEAVSLVCVDELKLLA 361 Query: 359 NIERTMKLTIPEVELPNAELL---------------GKRRLEKFAAKVQQQLESSDLDQY 403 +IE + IP+ P E G++ E + Q+ + Sbjct: 362 DIEAFIGRPIPQFTEPGFEADLSVPPQPLLPPRHQQGRQDGEGGEPRGQRNKKKPHNKPA 421 Query: 404 RALLSKIQPTAEGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDR 463 R + P E A + + + P+ +P+ RD P+++ Sbjct: 422 RRADAPTLPMDAPEHDSGAPAPVAEAQPPRQRKPAPGQPNPAGKPQGAARDGKKPRPQNQ 481 Query: 464 NDRGPRGDREDRPRRERRDVGDMQL 488 ++ E R R R+ + Sbjct: 482 QNKKSGQPFEAREPRPPRENDGNRT 506 >UniRef50_C9RPH4 DEAD/DEAH box helicase domain protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RPH4_FIBSS Length = 486 Score = 555 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 161/486 (33%), Positives = 252/486 (51%), Gaps = 23/486 (4%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F +L L P+ A+ +GYE P+PIQ IP LL G+D+LG+AQTG+GKTAAF+LP+LQ Sbjct: 3 FEELPLANPLQRAVRAVGYETPTPIQERSIPSLLEGKDLLGIAQTGTGKTAAFALPILQR 62 Query: 68 LD-----PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 L K + L+L PTRELA+QV + ++++ ++ ++GG + Q + L Sbjct: 63 LLDSGKFRSPKTCRALILLPTRELAIQVEDCFREYAQFTA-ISTACIFGGVNDNPQKQKL 121 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 +G ++V TPGRLLD + + + L KL VLDEAD ML MGFI D+ ++A +P+ Q Sbjct: 122 IRGVDVLVATPGRLLDLIGQKAISLKKLEFFVLDEADRMLDMGFIHDIRKVVAMLPQDRQ 181 Query: 183 TALFSATMPEAIRRITRRFMK-EPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL- 240 FSATMPE I ++ ++ P V + T I Q + + RK L L Sbjct: 182 NLFFSATMPEEISKLAATILRPNPVRVEVAPQSTPIERIRQELYRIDKRRKGALLKELLA 241 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 E + ++F RTK+ ++ LE+ G AA++G+ +Q R++ L K ++ +L+ Sbjct: 242 EHPEMKKVLVFCRTKHGADKIVRVLEKAGIKCAAIHGNKSQNRRQEALGNFKCEQIRVLV 301 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATD+AARG+DV+ +S V NYD+P + E++VHRIGRT RAG+ G A+ F E LR I Sbjct: 302 ATDIAARGIDVDDVSHVFNYDLPNEHETFVHRIGRTARAGKEGVAISFCSPDEESDLRGI 361 Query: 361 ERTMKLTIPE--------VELPNAE----LLGKRRLEKFAAKVQQQLESSDLDQYRALLS 408 E+ ++ IPE + P E ++ R + Q + + ++ + Sbjct: 362 EKLTRVKIPEGDQSIYENLPPPQKETAESMMRNSRGRMSREEAQARAAETRNNRGNRKGN 421 Query: 409 KIQPTAEGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGP 468 + + + E ++ + + P D P+ R P R R Sbjct: 422 HGKQNSNNAPHNSEQISRNPAQNVTVQNA---PADNTPNPQNGGRRHRRNRPGSRARRRM 478 Query: 469 RGDRED 474 R + Sbjct: 479 RESQSQ 484 >UniRef50_UPI0001C311D7 DEAD/DEAH box helicase domain protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C311D7 Length = 481 Score = 555 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 179/363 (49%), Positives = 242/363 (66%), Gaps = 1/363 (0%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 TTFADLGL AP+LEAL D+GYE PSPIQ + IP LL G D++G AQTGSGKTAAF LPL+ Sbjct: 2 TTFADLGLSAPVLEALRDVGYENPSPIQEQAIPPLLAGNDMIGQAQTGSGKTAAFGLPLM 61 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 + +DP + Q LVL PTREL +QV +A+ + +G++VVA++GG Q LR G Sbjct: 62 EYVDPSDRDVQALVLTPTRELCIQVTQALRSYGAR-KGIDVVAVFGGAPIRSQQAQLRAG 120 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 QIVVGT GR+ D + R +L L +VLDEADEML +GF+EDVE I+A P QTAL Sbjct: 121 GQIVVGTVGRVKDLISRHSLMLHGTRFVVLDEADEMLDLGFLEDVEKILALTPGSRQTAL 180 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSATMP IR+++ R++ P V+++++ T + Q + K + L LE+E Sbjct: 181 FSATMPPEIRKLSERYLYNPVHVKVRAATLTVDTVEQFSLEMSQRDKPDMLGTVLESEKP 240 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 D AI+FVRTK ++ L G N AL+GDM+Q R+ + K GRL IL+ATDVA Sbjct: 241 DQAIVFVRTKIRCDQLYRTLRDRGMNVKALHGDMSQGQRDGVMLSFKSGRLPILVATDVA 300 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARGLD+ ++ VVN+D+P + YVHRIGRTGR GR+GRA+ F +++++R + IER + Sbjct: 301 ARGLDISSVTHVVNFDVPTSPDVYVHRIGRTGRVGRSGRAITFYDSKQKRDIEAIERHTR 360 Query: 366 LTI 368 + Sbjct: 361 TPM 363 >UniRef50_B3RIS6 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3RIS6_TRIAD Length = 654 Score = 554 bits (1429), Expect = e-156, Method: Composition-based stats. Identities = 150/402 (37%), Positives = 226/402 (56%), Gaps = 11/402 (2%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +F++ ++ +N+ G++ P+PIQA+ P L+GRDV+G+AQTGSGKT A+ LP + Sbjct: 80 SFSEASFPDYVMSEINNQGFKLPTPIQAQSWPVGLSGRDVVGIAQTGSGKTLAYVLPSII 139 Query: 67 NLDPEL-----KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 ++ + P L+L PTRELA QV T F + + +N +YGG QLR Sbjct: 140 HIKNQPPLRHGDGPIALILCPTRELAQQVHSVSTTFGR-LARINCACIYGGSPKGPQLRE 198 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 L +G +I V TPGRLLD L+ +L++ S LVLDEAD ML MGF ++ I+ I Sbjct: 199 LSRGVEICVATPGRLLDFLESRRTNLNRCSYLVLDEADRMLDMGFEPQIKQIIGSIKCPR 258 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQS-SVTTRPDISQSYWTVWGMRKNEALVRFL 240 QT ++SAT P+ IR + R F+++ ++ I S +TT +I Q K + L + L Sbjct: 259 QTVMWSATWPKEIRTLAREFLRDYVQINIGSSDLTTNHNIKQIVEVCREEEKEDKLCKLL 318 Query: 241 EA---EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLD 297 +D I+FV TK + ++ L R+G+ ++GD Q+ R++ L + GR+ Sbjct: 319 SDILRQDEKKTIVFVETKKKSDYLSRRLVRSGWPVLCIHGDKCQSERDRVLSEFRSGRIP 378 Query: 298 ILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLL 357 +LIATDVAARGLD+ + LV+NYD P +SE YVHRIGRT R+G+ G A F R Sbjct: 379 VLIATDVAARGLDISDVKLVINYDFPNNSEDYVHRIGRTARSGKTGTAYTFFTASNIRQS 438 Query: 358 RNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSD 399 N+ ++ + P+ LG + A K + ++ D Sbjct: 439 PNLIALLREANQPIN-PDLIQLGDAARAEMAQKHRGKMRGRD 479 >UniRef50_D2QY81 DEAD/DEAH box helicase domain protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2QY81_9PLAN Length = 458 Score = 553 bits (1427), Expect = e-156, Method: Composition-based stats. Identities = 165/399 (41%), Positives = 244/399 (61%), Gaps = 4/399 (1%) Query: 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 + TFA + L ++ AL GYE P+PIQA IP L G DV+G A+TG+GKTA+F +P+ Sbjct: 11 KPTFASMDLSDQMMAALEKAGYEYPTPIQAGLIPRALEGVDVVGQARTGTGKTASFVIPI 70 Query: 65 LQNLDPELKAP--QILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 L+ LD E AP Q L+L PTRELAVQV + + S+ ++ +N A+YGG+ Q+ L Sbjct: 71 LELLDIERGAPTPQALILVPTRELAVQVRDEVVKLSEGLK-INCAAVYGGKPIKSQVDKL 129 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 ++G +VVGTPGR+LDH+ RGT+D + + +VLDEAD ML +GF D+E I+ + P Q Sbjct: 130 KKGCHVVVGTPGRVLDHIARGTIDFTHIECVVLDEADRMLDIGFRPDIERILKRCPRERQ 189 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 T L SAT+P I ++ +R+M EP+ + + + I Q Y+TV RK + L++ L Sbjct: 190 TLLLSATVPPPIAKLAQRYMYEPEMLNFSPADVSVDTIEQKYFTVEHDRKFDLLMKLLLR 249 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 E+ AI+F RTK T +V + L + N+AA++GD++Q R++ + +DG + L+AT Sbjct: 250 EEPKQAIVFCRTKRGTDKVYQKLTKKLGNTAAIHGDLSQGQRDRVMAGFRDGSVRYLVAT 309 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 DV RG+DV +S +VN+DIP+ + YVHR+GRTGR GR G A FV E L IE Sbjct: 310 DVIGRGIDVSTVSHIVNFDIPVFCDDYVHRVGRTGRMGREGVAYTFVCPDEGHELTRIEE 369 Query: 363 TMKLTIPEVELPNAELLG-KRRLEKFAAKVQQQLESSDL 400 + + E+ + E +G R + A Q + + Sbjct: 370 RINKLLKRDEMRDFEPVGYGERSARAPAAPTQVISGKYM 408 >UniRef50_C7JBN9 DNA/RNA helicase n=19 Tax=cellular organisms RepID=C7JBN9_ACEP3 Length = 636 Score = 553 bits (1426), Expect = e-156, Method: Composition-based stats. Identities = 175/501 (34%), Positives = 264/501 (52%), Gaps = 37/501 (7%) Query: 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 TFADL L PIL A++D+GY P+PIQ + IP +L RDV+G+AQTG+GKTA+F+LP+ Sbjct: 154 SVTFADLELSEPILRAISDMGYTHPTPIQEQAIPAILMARDVMGVAQTGTGKTASFTLPM 213 Query: 65 LQNLD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 L+ L + P+ L+L PTRELA+QVAE ++ K+++ +N L GG+ Q Sbjct: 214 LEILSDSRARARMPRSLILEPTRELALQVAENFVNYGKYLK-LNHALLIGGESMADQKEV 272 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 L +G +++ TPGRLLD +RG L L+ LV+DEAD ML MGFI D+E I+ +P Sbjct: 273 LNRGVDVLIATPGRLLDLFERGGLMLNHTGILVIDEADRMLDMGFIPDIEKIVGLLPPNR 332 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 QT LFSATM IR++ F+ P+E+ + + I+ V K E L + L+ Sbjct: 333 QTLLFSATMAPTIRKLADAFLHSPKEITVARQSSVATTITTGIVVVDEYSKRETLRQLLK 392 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 AI+F K + ++L ++G+++AAL+GD+ Q++R TLE+ K+ L +L+ Sbjct: 393 DPALQNAIVFCNRKRDVDILTKSLVKHGFSAAALHGDLPQSVRFSTLEKFKNDELKVLVC 452 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 +DVAARG+D+ +S V N+D+P +E YVHRIGRTGRAGR G A ++ L IE Sbjct: 453 SDVAARGIDIGGLSHVFNFDLPFHAEDYVHRIGRTGRAGREGHAYSIATPYDKALAEAIE 512 Query: 362 RTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDL 421 + IP + L + L ++ A ++ + ++ Sbjct: 513 KLTGKEIPRMALDGVKQLEWSDEKRPPAGRTRKPRTPQRER------------------- 553 Query: 422 ETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERR 481 E + P + K + R +R P RN R R + P + + Sbjct: 554 -------------ENAVPTPREQQPEAKPQQTARPERQP-TRNTRHQRDEIPPAPGGDVQ 599 Query: 482 DVGDMQLYRIEVGRDDGVEVR 502 GDM + + R V Sbjct: 600 GFGDMVPAFMLLPRRSSVRPA 620 >UniRef50_B3QTY3 DEAD/DEAH box helicase domain protein n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QTY3_CHLT3 Length = 431 Score = 553 bits (1426), Expect = e-156, Method: Composition-based stats. Identities = 151/366 (41%), Positives = 222/366 (60%), Gaps = 5/366 (1%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 F + L IL AL +LGYE P+ IQA IP + G+D+L AQTG+GKTAAF+LP+L Sbjct: 5 NFESISLNPSILRALKELGYETPTAIQAAAIPEAILGKDILATAQTGTGKTAAFALPILH 64 Query: 67 NLDPEL----KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 L +AP+ L+L PTRELA+Q+ + +++++R + + GG Q++ L Sbjct: 65 RLGENRSYDIRAPRALILTPTRELALQIDNNIRLYARYLR-LRTGVIMGGVPAHPQIKML 123 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 R+ P I+V TPGRL+D +G + L ++ VLDEAD ML MGFI+D+ I + P HQ Sbjct: 124 RRNPDILVATPGRLIDLFDQGFIGLDQIQTFVLDEADRMLDMGFIDDIRRIESLQPRDHQ 183 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 T LFSAT+ I + R ++EP + + + +I+Q V K E L + Sbjct: 184 TLLFSATLSPEIEALASRMLREPVRIEVAPVSSVADNITQKVLFVEQNNKRELLHNLFKE 243 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 D A++F RTK VAE L R G ++ A++ +Q R++ L G++++L+AT Sbjct: 244 NDIKRALVFTRTKQRANHVAEQLIRLGISADAIHSSKSQRARQRALMLFDRGKINVLVAT 303 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 D+AARG+DV+ IS V+NY++P D E+YVHRIGRT RAG +G AL F + E R+L+ IE+ Sbjct: 304 DIAARGIDVDGISHVINYELPDDPENYVHRIGRTARAGASGTALSFCDADEVRMLKGIEK 363 Query: 363 TMKLTI 368 K +I Sbjct: 364 LTKSSI 369 >UniRef50_C5LBR0 RNA helicase, putative n=4 Tax=Perkinsus marinus ATCC 50983 RepID=C5LBR0_9ALVE Length = 674 Score = 553 bits (1426), Expect = e-156, Method: Composition-based stats. Identities = 147/381 (38%), Positives = 218/381 (57%), Gaps = 17/381 (4%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 TF + L IL+ +N G+EKP+PIQ + P L+GRD++G+A+TGSGKT AF +P + Sbjct: 213 TFDEACLPDYILKEINRAGFEKPTPIQVQGWPVALSGRDMVGIAETGSGKTLAFMIPAVI 272 Query: 67 NLDPEL-----KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 +++ + P +L+LAPTRELA+Q+ F + R + +YGG + Q RA Sbjct: 273 HINAQPYLQKGDGPIVLILAPTRELALQIKAECDRFGRSSR-ITNTCVYGGTQRGPQARA 331 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 L+ G +I + TPGRL+D L+ GT +L +++ LV+DEAD ML MGF V I++QI Sbjct: 332 LQNGVEICIATPGRLIDFLESGTTNLKRVTYLVMDEADRMLDMGFEPQVRKIVSQIRPDR 391 Query: 182 QTALFSATMPEAIRRITRRFMKE-PQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 QT ++SAT P+ ++ + R E P V + S +I Q V K E L+ + Sbjct: 392 QTLMWSATWPKEVQHLARDICNEEPVLVTVGRSGHACHNIQQYVEVVENNVKPERLLALM 451 Query: 241 EAED-------FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKD 293 +A +IF TK ++ L R+G+ + +++GD Q+ R+ L + K Sbjct: 452 QAASAATGGGWTAKTLIFCDTKRGADDITRLLRRDGWPALSIHGDKKQSERDWVLNQFKT 511 Query: 294 GRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRE 353 GR I+IATDVA+RGLDV+ + V+NYD P E YVHRIGRTGRAG +G A F + Sbjct: 512 GRSAIMIATDVASRGLDVKDVKYVINYDFPGTIEDYVHRIGRTGRAGASGVAYSFFSPDK 571 Query: 354 RRLLRNIE---RTMKLTIPEV 371 +L R + R ++PE Sbjct: 572 GKLARQLVNCLREANQSVPEA 592 >UniRef50_B5EAF1 DEAD/DEAH box helicase domain protein n=3 Tax=Deltaproteobacteria RepID=B5EAF1_GEOBB Length = 471 Score = 551 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 165/472 (34%), Positives = 247/472 (52%), Gaps = 10/472 (2%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F L + + +GY P+PIQ + IP +++G+DVLG+AQTG+GKTAAF LP+L Sbjct: 3 FKQFNLHPKVQAGIEAMGYVTPTPIQLQAIPSVISGQDVLGLAQTGTGKTAAFGLPMLHR 62 Query: 68 LDPELKA-PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 L E + + LVLAPTRELA Q+ +A+ K R + V +YGG + Q++ L++G Sbjct: 63 LVQEERGHVRGLVLAPTRELAEQINDALNGMGKQTR-LRSVTVYGGVNINTQIKKLKEGA 121 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 +IVV PGRLLDH+ +GT+DLS++ LVLDEAD+M MGF+ DV I+ +P Q +F Sbjct: 122 EIVVACPGRLLDHISQGTIDLSRVEILVLDEADQMFDMGFLPDVRKILRALPGKRQNLMF 181 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SATMP+ IRR+ ++ P V++ S +S + + V K L L+ D + Sbjct: 182 SATMPDDIRRLAHEILRNPVTVQV-SRTAPAATVSHALYPVGQHLKTPLLFEMLKHTDTE 240 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 + +IF +TK+ V E LE+ GY + +L G+++Q R+ L+ +DG I++ATD+AA Sbjct: 241 SVLIFTKTKHRAKRVGEQLEKAGYKATSLQGNLSQNRRQAALDGFRDGTFQIMVATDIAA 300 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RG+DV IS V+NYDIP E+Y HRIGRTGRA + G A V + + +R+IE+ + Sbjct: 301 RGIDVSLISHVINYDIPDTPEAYTHRIGRTGRAAKTGDAFTMVTSEDDYTVRSIEKVLGT 360 Query: 367 TIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETL-- 424 I + + + + D + + + Sbjct: 361 KIERRRIEGFDYAVPAPQKDTEFARPPREPQRRRDGAKPGAGRPAAAGPAGAKPASAVGA 420 Query: 425 ----AAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDR 472 AA+ A G + P + R G R N R R Sbjct: 421 KGNAAASGRPAAHGSKDGSADGGHASGPAGKHRQHPG-GNRPANHAARRSGR 471 >UniRef50_P24783 ATP-dependent RNA helicase DBP2 n=131 Tax=Eukaryota RepID=DBP2_YEAST Length = 546 Score = 551 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 142/376 (37%), Positives = 225/376 (59%), Gaps = 13/376 (3%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 TTF + G +L + G++KP+ IQ + P L+GRD++G+A TGSGKT ++ LP + Sbjct: 113 TTFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGI 172 Query: 66 QNLDPEL-----KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 +++ + P +LVLAPTRELAVQ+ + F H + +YGG Q+R Sbjct: 173 VHINAQPLLAPGDGPIVLVLAPTRELAVQIQTECSKFG-HSSRIRNTCVYGGVPKSQQIR 231 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 L +G +IV+ TPGRL+D L+ G +L +++ LVLDEAD ML MGF + I+ QI Sbjct: 232 DLSRGSEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPD 291 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQS-SVTTRPDISQSYWTVWGMRKNEALVRF 239 QT ++SAT P+ ++++ ++ +P +V++ S ++ +I+Q V K + L ++ Sbjct: 292 RQTLMWSATWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKY 351 Query: 240 LEA---EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRL 296 LE ++ +IF TK ++ + L +G+ + A++GD +Q R+ L+ ++GR Sbjct: 352 LETASQDNEYKTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRS 411 Query: 297 DILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRL 356 I++ATDVAARG+DV+ I+ V+NYD+P + E YVHRIGRTGRAG G A+ F + + L Sbjct: 412 PIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQNKGL 471 Query: 357 ---LRNIERTMKLTIP 369 L +I R IP Sbjct: 472 GAKLISIMREANQNIP 487 >UniRef50_C5TNR4 Dead/deah box helicase n=8 Tax=Neisseriaceae RepID=C5TNR4_NEIFL Length = 487 Score = 551 bits (1420), Expect = e-155, Method: Composition-based stats. Identities = 165/456 (36%), Positives = 247/456 (54%), Gaps = 17/456 (3%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F+ LGL + ++ AL D GYE P+PIQA IP L G D+L AQTG+GKTAAF LP L+ Sbjct: 28 FSSLGLGSELVSALTDQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLEL 87 Query: 68 LD--------PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119 L P + ++LVL PTRELA Q+ + + + K++ + L+GG D Q Sbjct: 88 LKRYATSSTSPAMHPVRMLVLTPTRELADQIDQNVQAYIKNLP-LRHTVLFGGVNMDKQT 146 Query: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179 LR G +IVV T GRLLDH+K+ ++L+K+ +VLDEAD ML MGFI+D+ IM +P+ Sbjct: 147 ADLRAGCEIVVATVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPK 206 Query: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239 QT LFSAT IR++ + FM P+ V + + TT ++ Q V ++K L R Sbjct: 207 QRQTLLFSATFSPPIRKLAQDFMHTPEMVEVAAQNTTNANVEQHIIAVDALKKRSLLERL 266 Query: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299 + + I+F +TK + +V L R + +++GD +Q R +TL K+G L +L Sbjct: 267 IVDLHMNQVIVFCKTKQSVDQVTRDLVRRNIAAQSIHGDKSQQSRLETLNAFKEGTLRVL 326 Query: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359 +ATDVAARGLD+ + V+NY++P E YVHRIGRTGRAG G A+ ++ E+++ Sbjct: 327 VATDVAARGLDIAELPFVINYELPTQPEDYVHRIGRTGRAGADGVAISLMDKTEQKMFEA 386 Query: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEL 419 I+ + + E + A+ Q ++ +D R +K A + Sbjct: 387 IKELTGSDLNVERIEGFEPHWWDNDNQNEAEAQ-PVQHNDSRSRRDDRNKRNEYANKSDK 445 Query: 420 DLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDR 455 + + K + IV R +R +R Sbjct: 446 NSK-------KAEEKNDPGIVCGKIAGRTRRSRHER 474 >UniRef50_B8FPB9 DEAD/DEAH box helicase domain protein n=12 Tax=Bacteria RepID=B8FPB9_DESHD Length = 428 Score = 550 bits (1419), Expect = e-155, Method: Composition-based stats. Identities = 154/370 (41%), Positives = 234/370 (63%), Gaps = 7/370 (1%) Query: 9 ADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNL 68 +L + PI +AL GY + +PIQAE IPHLL G D+LG AQTG+GKTAAF++P+LQ+L Sbjct: 7 NELKIINPIQKALAAQGYSEATPIQAEAIPHLLEGLDLLGCAQTGTGKTAAFAIPILQSL 66 Query: 69 D------PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 + + LVLAPTRELA Q+AE+ T + ++ + + ++GG Q R L Sbjct: 67 AMGQGLLKGKRQIRALVLAPTRELATQIAESFTAYGVNLP-LRTLVIFGGVGQAPQTRKL 125 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 +G I+V TPGRLLD + +G +DLS + VLDE D+ML MG + DV+ I+ +P Q Sbjct: 126 EKGIDILVATPGRLLDLINQGFIDLSHVEHFVLDETDQMLDMGMLHDVKRIITYLPRERQ 185 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 LFSATMP I ++ +K P ++ + + I Q + V K L +L+ Sbjct: 186 NMLFSATMPVEIEKLADTILKGPVKIAMTPEFSPLDIIEQEVYFVDKANKAALLTYWLKN 245 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 ++D+ ++F RTK+ ++ + L + G+ + A++G+ +QA REQ L K + IL+AT Sbjct: 246 NEYDSVLVFSRTKHGADKIVKELNKKGFTAVAIHGNKSQANREQALHAFKKRKTRILVAT 305 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 D+AARGLD++ +S V+NY++P E+Y+HRIGRTGRAG G+A+ F + E+ LLR+I++ Sbjct: 306 DIAARGLDIQELSHVINYNLPEVPETYIHRIGRTGRAGLGGKAITFCDFEEKPLLRDIQK 365 Query: 363 TMKLTIPEVE 372 + T+PEV+ Sbjct: 366 RIGKTLPEVK 375 >UniRef50_A5UZK3 DEAD/DEAH box helicase domain protein n=8 Tax=Bacteria RepID=A5UZK3_ROSS1 Length = 467 Score = 550 bits (1418), Expect = e-155, Method: Composition-based stats. Identities = 184/480 (38%), Positives = 259/480 (53%), Gaps = 17/480 (3%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +F I + DLGY P+PIQ + IPH L+GRDV+G+AQTG+GKTAAF LP+LQ Sbjct: 2 SFDSFRFHPQITAGIRDLGYHTPTPIQEQVIPHALDGRDVIGIAQTGTGKTAAFVLPILQ 61 Query: 67 NLDPELKA-PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 L + + +++ PTRELA Q+ + K+ G+ V LYGG Y Q++ LR+G Sbjct: 62 RLMRGPRGRVRAMIVTPTRELAEQIQGVIEALGKYT-GLRSVTLYGGVGYQGQIQRLRRG 120 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 +I V PGRLLDHL+RGTL L L L+LDEAD+M MGF+ DV I+ P QT L Sbjct: 121 VEIAVVCPGRLLDHLERGTLTLEHLDMLILDEADQMFDMGFLPDVRRILRLAPAQRQTML 180 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSATMP+AIR + R ++EPQ ++I ++ + + V K L+ L D Sbjct: 181 FSATMPDAIRALAREALREPQTIQIGR-SAPVSTVTHAIYPVAEHLKTALLIELLRHTDT 239 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 + +IF RTK+ +++ L R GY + AL G+M+Q R+ L+ + GR IL+ATD+A Sbjct: 240 GSVLIFTRTKHRAQHLSDTLARMGYRATALQGNMSQNRRQAALDGFRSGRYQILVATDIA 299 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARG+DV IS V+NYD+P +E+Y HRIGRTGRA R G A V + ++R IER + Sbjct: 300 ARGIDVAHISHVINYDMPQTAEAYTHRIGRTGRAARTGDAFTLVTRSDTGMVRAIERLIG 359 Query: 366 LTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLA 425 + +P + AA S ++ A+ +P ++ E Sbjct: 360 EPLKRETVPGFDY--------HAAAPAHDARSDHAPRHHAMPRHYEPHSQDE----RDNR 407 Query: 426 AALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRN--DRGPRGDREDRPRRERRDV 483 A AQ R+ P ++ R + PR R+ R R DR DR RR Sbjct: 408 APRRHDAQERRSDTAPRRRDVQEWRSDAAPNRHKPRSRDTSARSTRADRSDRTVSGRRRP 467 >UniRef50_A8IAJ3 Helicase n=4 Tax=Alphaproteobacteria RepID=A8IAJ3_AZOC5 Length = 582 Score = 550 bits (1418), Expect = e-155, Method: Composition-based stats. Identities = 183/488 (37%), Positives = 266/488 (54%), Gaps = 10/488 (2%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +F++LGL +L A+ GY P+PIQA+ IPH+L RDVLG+AQTG+GKTAAF+LP+L Sbjct: 65 SFSELGLSEKVLSAVAATGYTTPTPIQAQAIPHVLARRDVLGLAQTGTGKTAAFTLPMLT 124 Query: 67 NLD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 L+ + P+ L+L PTRELA QV E + K+ +NV L GG + Q L Sbjct: 125 LLEQGRARARMPRTLILEPTRELAAQVEENFVRYGKN-HKLNVALLIGGVSFGDQDTKLL 183 Query: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183 +G +++ TPGRLLDH++RG L LS + LV+DEAD ML MGFI D+E I +P QT Sbjct: 184 RGVDVLIATPGRLLDHVERGRLLLSGIEVLVIDEADRMLDMGFIPDIERICKLVPFTRQT 243 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTV--WGMRKNEALVRFLE 241 FSATMP I+R+ +F+ P V + + I+Q K E L + Sbjct: 244 LFFSATMPPEIQRLVSQFLSNPVRVEVSKPASANTSITQLLVASGREDYEKRETLRELIR 303 Query: 242 A-EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 + I+F K V +L+++G+N L+GDM+Q R Q L++ + G +L+ Sbjct: 304 NADQLQNGIVFCNRKRDVAVVHRSLQKHGFNVVCLHGDMDQHARTQALDQFRTGEATLLV 363 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 A+DVAARGLD+ +S V NYD+P SE YVHRIGRTGRAGR G A++ V + + + L I Sbjct: 364 ASDVAARGLDIPAVSHVFNYDVPHHSEDYVHRIGRTGRAGRTGTAIMLVTHDDAKSLAAI 423 Query: 361 ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQ--YRALLSKIQPTAEGEE 418 E+ + IP P E + + + + +++ E S+ ++ R + +G E Sbjct: 424 EKLIGNAIPWQGEPLGEAPPREKRSRGGDRREERGERSERNKRSGRGRSERKAEVEDGVE 483 Query: 419 LDLE-TLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPR 477 + E A + E P A +P+ E R +R R + P G+R +PR Sbjct: 484 VRAERAPRPAREGRPEREPRPEREPRAERQPRPEREARPEREARPEREARPEGERARKPR 543 Query: 478 RERRDVGD 485 E D Sbjct: 544 PETADAAS 551 >UniRef50_UPI00016C5336 ATP-dependent RNA helicase n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C5336 Length = 523 Score = 550 bits (1417), Expect = e-155, Method: Composition-based stats. Identities = 162/371 (43%), Positives = 226/371 (60%), Gaps = 2/371 (0%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 FADL L P+++A+ GY+ P+PIQ IP L G+DV+G AQTG+GKTAAF +P L Sbjct: 88 FADLKLMRPLMDAITAAGYKNPTPIQENVIPPALRGKDVIGQAQTGTGKTAAFLIPFLNR 147 Query: 68 LDPE-LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 P LK P +V+ PTRELA+Q+A + R V +YGG QL L +G Sbjct: 148 WRPHTLKGPIGVVMTPTRELALQIANEAEKLAPSKR-FRCVPVYGGTGMQRQLDGLTRGC 206 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 +VVGTPGR+LDHL+RG++ LS++ VLDEAD ML +GF +D+E I+ + P QT L Sbjct: 207 DLVVGTPGRMLDHLQRGSMSLSQVRYAVLDEADRMLDIGFRDDIERILKRCPSERQTLLM 266 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SAT+P++I+R+ R+M++P + + T I QSY+TV RK E L R +E E Sbjct: 267 SATVPDSIKRLVNRYMRDPVHLHMMPEKPTVDKIRQSYFTVDQDRKFELLKRVVEREKPR 326 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 +IFV K + L+R +A ++GD+ Q+ RE+ + + + LIATDV + Sbjct: 327 QCLIFVERKRWADNLYRDLKRAVPKAAVIHGDLPQSQREKIMAAFRTADIKYLIATDVMS 386 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RG+DV +S V+NYD+PMD E+YVHRIGRTGR G+ G A+ FV + L NIE + Sbjct: 387 RGIDVSGLSHVINYDLPMDIENYVHRIGRTGRIGKDGIAISFVLPEQGEHLTNIEMMINR 446 Query: 367 TIPEVELPNAE 377 I E + E Sbjct: 447 LIEEDRVEGFE 457 >UniRef50_P24782 ATP-dependent RNA helicase dbp2 n=63 Tax=Eukaryota RepID=DBP2_SCHPO Length = 550 Score = 550 bits (1417), Expect = e-155, Method: Composition-based stats. Identities = 138/390 (35%), Positives = 221/390 (56%), Gaps = 11/390 (2%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 + + TTF + G +L+ + LG+E P+PIQ + P ++GRD++G++ TGSGKT ++ Sbjct: 117 VPKPVTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSY 176 Query: 61 SLPLLQNLDPEL-----KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRY 115 LP + +++ + P +LVLAPTRELAVQ+ + T F K R + +YGG Sbjct: 177 CLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSR-IRNTCVYGGVPR 235 Query: 116 DVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMA 175 Q+R L +G +I + TPGRLLD L +L +++ LVLDEAD ML MGF + I+ Sbjct: 236 GPQIRDLIRGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVD 295 Query: 176 QIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQS-SVTTRPDISQSYWTVWGMRKNE 234 QI QT +FSAT P+ ++R+ R ++ + +V + S + +I Q V K Sbjct: 296 QIRPDRQTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRA 355 Query: 235 ALVRFLEA---EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERL 291 L + +E + + +IF TK ++ L ++G+ + A++GD Q R+ L Sbjct: 356 RLGKDIEEVLKDRDNKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEF 415 Query: 292 KDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVEN 351 + G+ I++ATDVA+RG+DV+ I+ V NYD P ++E YVHRIGRTGRAG G A + + Sbjct: 416 RTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTS 475 Query: 352 RERRLLRNIERTMKLTIPEVELPNAELLGK 381 + R + + +++ P E + + Sbjct: 476 DNAKQARELVSILSEAKQDID-PKLEEMAR 504 >UniRef50_A7K2L3 ATP-dependent RNA helicase n=17 Tax=Vibrionaceae RepID=A7K2L3_VIBSE Length = 419 Score = 549 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 158/384 (41%), Positives = 235/384 (61%), Gaps = 3/384 (0%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 FADLG++ ++E L++L P+P+Q + IPH+L G+++L AQTG+GKTAAF LP Sbjct: 1 MSVNFADLGIEQKLIETLSNLNIVTPTPVQEKSIPHVLEGKNLLAAAQTGTGKTAAFGLP 60 Query: 64 LLQNLDPEL--KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 ++Q + + PQ LVL PTRELA QV + + +S + +V +YGG VQ R Sbjct: 61 IIQTVQQKKLNGTPQALVLVPTRELAQQVFDNLNQYSAQTE-LRIVCVYGGTSIGVQKRK 119 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 L +G I++ TPGRLLDHL G +++SK S LVLDEAD ML MGF D++ I ++P Sbjct: 120 LEEGADILIATPGRLLDHLFNGNVNISKTSMLVLDEADRMLDMGFWPDLQRIFRRLPAEK 179 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 Q LFSAT + I+ I + M+ P EV + + TT + Q + V RK E L + Sbjct: 180 QILLFSATFEKRIKTIAYKLMESPVEVEVSPANTTAETVKQMVYPVDKKRKRELLAYLIG 239 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 + ++ ++F +TK + E+A+ L+ +G + ++NGD +Q R++ L+ K G++ LIA Sbjct: 240 SRNWQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVRALIA 299 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 TDVAARGLD++ + VVN+D+P +E YVHRIGRTGRAG++G A+ + E LL IE Sbjct: 300 TDVAARGLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSLMSRDEEYLLHAIE 359 Query: 362 RTMKLTIPEVELPNAELLGKRRLE 385 + +P+ L E +E Sbjct: 360 NLLDQRLPQEWLAGFEPTLIEEVE 383 >UniRef50_D0LYA3 DEAD/DEAH box helicase domain protein n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LYA3_HALO1 Length = 908 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 188/454 (41%), Positives = 277/454 (61%), Gaps = 4/454 (0%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +FA+LGL+ +L+AL ++GY++P P+QA L+NGRDV+ ++TGSGKTA F +P++Q Sbjct: 63 SFAELGLQPELLQALEEMGYDRPMPVQAAVFQPLMNGRDVMVQSRTGSGKTAGFGIPVVQ 122 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 ++D K Q L+LAPTRELA+QV+ + +K +G+++ +YGG Q+ AL G Sbjct: 123 HIDAASKGAQALILAPTRELALQVSREIAQLAKP-KGLHIEPIYGGAPIKPQMDALAAGA 181 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP--EGHQTA 184 Q+V GTPGR+LDHL+R TLD + L+LDE DEML MGF E++E I+ +P E QT Sbjct: 182 QVVSGTPGRVLDHLRRKTLDPKNIRMLILDECDEMLSMGFQEEIERIIEHLPAKENRQTV 241 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 LFSAT+P+ I+RI RR M +P+E+ + + + DI SY+ V G+ + L++ L AE Sbjct: 242 LFSATIPDEIQRIARRHMTDPEEISLSTGNISVDDIDHSYYVVSGVARTRDLLKVLRAES 301 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 D+AIIF T+ T VA+ L+ GY++ A++ D+ Q RE+ ++R++D LD L+ATDV Sbjct: 302 PDSAIIFCNTREDTNTVAKFLQGQGYDAEAISSDLTQRDRERVMKRMRDRNLDFLVATDV 361 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 AARG+D+ +S V+NY P E YVHR GRTGRAG++G A+ V RE ++ Sbjct: 362 AARGIDISDLSHVINYTFPDSPEVYVHRTGRTGRAGKSGVAISLVGPRELGSFYYLKLIY 421 Query: 365 KLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETL 424 K+ E +LP E +G +V + RAL +I + EGE + L Sbjct: 422 KIRPEERDLPTNEEMGILDEGARFERVAALVSEEPGADSRALARRIWQSDEGERI-FGAL 480 Query: 425 AAALLKMAQGERTLIVPPDAPMRPKREFRDRDDR 458 +L A ER+ P A + E R D+R Sbjct: 481 VQRVLADAPSERSKRSRPKAENTQRSEARRSDER 514 Score = 42.7 bits (100), Expect = 0.042, Method: Composition-based stats. Identities = 24/155 (15%), Positives = 55/155 (35%), Gaps = 7/155 (4%) Query: 411 QPTAEGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRG 470 + + + E + A Q + A +R R R + R PRG Sbjct: 754 KASGDEEPKEFWETWADEKAERQDDTAERQDDTAERPRRRRRRSRSEDASDSRASAAPRG 813 Query: 471 DREDRPRRERRDVGD--MQLYRIEVGRDDGVE---VRHIVGAIANEGDISSRYIGNIKLF 525 + + + + VG+ +G+ VR ++G D ++ IG++ L Sbjct: 814 EETETETETEIEDSGNLSARLYVNVGKREGLSAAQVRDLLGE--GLDDDTATRIGSVALR 871 Query: 526 ASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLL 560 +H + +P+ + V+ ++ + ++ Sbjct: 872 NTHCYVRVPEDIANHVIAAAEGKSYEDRELVVERA 906 >UniRef50_Q6MN50 ATP-dependent RNA helicase n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MN50_BDEBA Length = 656 Score = 548 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 206/637 (32%), Positives = 306/637 (48%), Gaps = 49/637 (7%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNG-RDVLGMAQTGSGKTAAFSLPLL 65 F GL AP++ A+ D+G+ P+PIQ + +P LL G D +G+A TG+GKTAAF +PL+ Sbjct: 45 NFESFGLSAPVMAAMADMGFTTPTPIQRQALPILLAGANDFIGLASTGTGKTAAFGIPLI 104 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 +N+D +K Q LVL+PTRELA+QVAE +T K +GV VV +YGG Y Q+ +++G Sbjct: 105 ENIDSTVKDTQALVLSPTRELALQVAEQLTLLGK-KKGVRVVTIYGGASYRTQIDGIKRG 163 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG----- 180 IVV TPGRL+D L++ + L + +VLDEADEML MGF E +ETI++ Sbjct: 164 AHIVVATPGRLVDFLEQKMIKLQSVKTVVLDEADEMLSMGFKEALETILSATQPDDSDSV 223 Query: 181 ---HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALV 237 +T LFSATM +RR+T +++ P+ V + T I Q Y+TV K E + Sbjct: 224 RAACRTWLFSATMSSEVRRLTSTYLENPETVSVNKVGGTADTIEQVYYTVKNSYKTEVIG 283 Query: 238 RFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLD 297 R L+ IIF +TK E+A+ L + G+ + +L+GD +Q RE TL++ K ++ Sbjct: 284 RLLQTLPEFYGIIFCQTKMEVAELADVLTQRGFPADSLHGDKSQQEREATLKKFKQRQVK 343 Query: 298 ILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLL 357 +++ATDVAARGLD++ ++ VVN+ +P DSESYVHRIGRTGR G+ G A+ V + LL Sbjct: 344 VIVATDVAARGLDIKDLTHVVNHSLPWDSESYVHRIGRTGRNGQKGTAITLVNPEQLTLL 403 Query: 358 RNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQ-LESSDLDQYRALLSKIQPTAEG 416 R + + K + + +P+A+ + +++ KV E+ L L+ + + Sbjct: 404 RRVMQNTKAVLTKGVIPSADEVAGLKIKDVMDKVTSMDPEAVQLQLASDLIQDLIQAEDI 463 Query: 417 --EELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDR-- 472 +EL E L A + P+ ++ DR PR+ R P +R Sbjct: 464 NFKELSKEELLARFI--------AAYFPNVFVKKDLMLDYMGDRVPRELLPRDPNDNRFT 515 Query: 473 --EDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHST 530 R GR GA A S G A S Sbjct: 516 RGGRGNDRRDDRDDYRARRPFGGGR----------GASAPARGFRSE--GA---RAEFS- 559 Query: 531 IELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFS 590 + + R ++P + + R ER S Sbjct: 560 ------GGEQRAERTERPAFRDRPERTER--PERAERPERSERAERAERSERSYRASASS 611 Query: 591 GERREGGRGDGRRFSGERREGRAPRRDDSTGRRRFGG 627 R + R RR D G +RF G Sbjct: 612 DRPARAERSERSERPQRAETDRPERRGDHPGIKRFRG 648 >UniRef50_Q8MZI3 CG10077, isoform A n=15 Tax=Eukaryota RepID=Q8MZI3_DROME Length = 818 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 140/367 (38%), Positives = 209/367 (56%), Gaps = 10/367 (2%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F + G ++ + G+ KP+ IQA+ P ++GRD++G+AQTGSGKT A+ LP + + Sbjct: 159 FEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLPAVVH 218 Query: 68 LDPELK-----APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 ++ + + P LVLAPTRELA Q+ + +F + V ++GG Q R L Sbjct: 219 INNQPRLERGDGPIALVLAPTRELAQQIQQVAIEFGSNTH-VRNTCIFGGAPKGQQARDL 277 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 +G +IV+ TPGRL+D L+RGT L + + LVLDEAD ML MGF + IM QI Q Sbjct: 278 ERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDRQ 337 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQS-SVTTRPDISQSYWTVWGMRKNEALVRFL- 240 ++SAT P+ +R++ F+ +V I S S++ +I Q K L++ L Sbjct: 338 VLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDENEKLMKLIKLLT 397 Query: 241 --EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDI 298 AE+ IIFV TK E+ + R G+ + A++GD +Q R+ L ++GR I Sbjct: 398 DISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSI 457 Query: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLR 358 L+ATDVAARGLDV+ + V+NYD P +SE YVHRIGRTGR+ G A + Sbjct: 458 LVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSNANKAN 517 Query: 359 NIERTMK 365 ++ + ++ Sbjct: 518 DLIQVLR 524 >UniRef50_Q0BSI7 ATP-dependent RNA helicase n=54 Tax=Alphaproteobacteria RepID=Q0BSI7_GRABC Length = 763 Score = 548 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 167/470 (35%), Positives = 253/470 (53%), Gaps = 10/470 (2%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 FADLGL P+ A+ ++GY P+PIQA+ IP +L GRDVLG AQTG+GKTA+F+LP++ Sbjct: 225 FADLGLSEPVQRAITEMGYLHPTPIQAQAIPVVLMGRDVLGCAQTGTGKTASFTLPMMDI 284 Query: 68 LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 L + P+ L+L PTRELA+QVAE + ++++ +N L GG+ + Q L + Sbjct: 285 LSDRRARARMPRSLILEPTRELALQVAENFVKYGQYLK-LNHALLIGGESMNDQRDVLSK 343 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 G +++ TPGRL+D RG L L+ LV+DEAD ML MGFI DVE I++ +P QT Sbjct: 344 GVDVLIATPGRLIDLFDRGGLLLTDTRILVIDEADRMLDMGFIPDVERIVSLLPHNRQTL 403 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 FSATM IRR+ F++ P+E+ + + I+ V M K +AL L E Sbjct: 404 FFSATMAPEIRRLADAFLQNPKEITVAKPASVATTITSGLALVGEMDKRKALRHLLRQEK 463 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 A+IF K + ++L ++G+ + L+GD+ Q+LR TLE+ K G L +L+ +DV Sbjct: 464 VQNALIFCNRKRDVDILTKSLVKHGFAAGPLHGDLAQSLRFSTLEKFKAGSLQLLVCSDV 523 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 AARG+D+ +S V N+D+P+ +E YVHRIGRTGRAGR G A ++ + IE+ + Sbjct: 524 AARGIDIGGLSHVFNFDVPIHAEDYVHRIGRTGRAGREGAAFTLASPDDKFAVDAIEKLI 583 Query: 365 KLTIPEVELPNA------ELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEE 418 IP +E+ E + R + + + + + K + E + Sbjct: 584 NAPIPRIEIEGLERAEWSEEPNRGRGRRHKNGKGGKGNNRYGSRGQDNARKDRAFTEADA 643 Query: 419 LDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGP 468 + + + P R R R+D R ++ G Sbjct: 644 KSQADITPDPVAEVATTQPAPAPAQPTQSQDRHHRSRNDEHGRQKHSGGH 693 >UniRef50_Q1J0S9 DEAD/DEAH box helicase-like protein n=2 Tax=Deinococcus RepID=Q1J0S9_DEIGD Length = 591 Score = 548 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 211/618 (34%), Positives = 309/618 (50%), Gaps = 70/618 (11%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 F L + + L + G + SPIQAE +PH L G+D++G A+TG+GKT AF+LP++Q Sbjct: 2 NFDQL-IAPELAARLAERGITEASPIQAESLPHTLAGKDLIGRARTGTGKTLAFALPIIQ 60 Query: 67 NLDP--------ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQ 118 NL + P+ +V+APTRELA QVAE FSK ++ V +YGG Y Q Sbjct: 61 NLTAPDGRGSRERGRLPRAIVIAPTRELAKQVAEE---FSKSGPQLSTVTVYGGAAYGPQ 117 Query: 119 LRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP 178 ALR+G +VVGTPGRL+DHL+RG LDLS + VLDEADEML +GF + +ETI+ Q P Sbjct: 118 ENALRRGVDVVVGTPGRLIDHLERGNLDLSAIQYAVLDEADEMLSVGFADAIETILQQTP 177 Query: 179 EGHQTALFSATMPEAIRRITRRFMKEPQEVRI--QSSVTTRPDISQSYWTVWGMRKNEAL 236 QT LFSAT+ + I R+ R++++EP V + + + V G + L Sbjct: 178 AARQTMLFSATLNDEIHRLARKYLREPVVVDLVGEGKSQAAQSVEHLKVKV-GRTRTRVL 236 Query: 237 VRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRL 296 L + + AI+F RTK E+A L G S AL+GD+ Q+ RE+ L + GR+ Sbjct: 237 ADLLTVYNPEKAIVFTRTKREADELANELIHRGIESEALHGDLAQSQRERALGAFRSGRV 296 Query: 297 DILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRL 356 +L+ATDVAARGLD+ + LVV Y +P D ESYVHR GRTGRAGR G A++ +RE R Sbjct: 297 GVLVATDVAARGLDIPEVDLVVQYHLPQDPESYVHRSGRTGRAGRTGTAIVMYGDRENRE 356 Query: 357 LRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEG 416 LRN+E + E LP + + + +A + ++++S ++A ++ Sbjct: 357 LRNLEYRTGVQFKERPLPTPKEVQAA-SARASADLVRKVDSGVAATFQAEAERLF----- 410 Query: 417 EELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRP 476 EL LE LA AL K++ + G RG+R P Sbjct: 411 SELGLEALARALAKISGVTEPVQAASLL-------------SGEEGLTTLILRGERLSVP 457 Query: 477 RRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKG 536 R V +A GD+ +R +G ++ + + ++P Sbjct: 458 RT--------------------------VALLARSGDVDTRRLGKVRQWRGGTVADVPSE 491 Query: 537 MPGEVLQHFTRTRILNKPMNMQLLGD-----AQPHTGGERRGGGRGFGGERREGGRNFSG 591 ++L + + +++++ + P G + G G G RNF G Sbjct: 492 YVEKLLAA---SPLEG-EVHLEVAQELPELFEAPTREGRQGSYGPRTGSRDESGSRNFRG 547 Query: 592 ER-REGGRGDGRRFSGER 608 R G R G R S R Sbjct: 548 SRGGYGNREGGSRGSQGR 565 >UniRef50_A5G1U8 DEAD/DEAH box helicase domain protein n=7 Tax=Alphaproteobacteria RepID=A5G1U8_ACICJ Length = 525 Score = 547 bits (1411), Expect = e-154, Method: Composition-based stats. Identities = 157/366 (42%), Positives = 225/366 (61%), Gaps = 6/366 (1%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 T F LGL P+L A+++ YE P+PIQA IP +L G D++G+AQTG+GKTAAF LP+L Sbjct: 57 TDFTTLGLAEPLLRAISEQSYETPTPIQARSIPVMLEGHDLVGIAQTGTGKTAAFVLPIL 116 Query: 66 QNL-----DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 + P +A + LVLAPTRELA Q+A+A + K R +V + GG + Q R Sbjct: 117 HRIAANRARPAPRACRALVLAPTRELATQIADAARTYGKFTRP-SVAVVIGGAKPGPQAR 175 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 + G ++V TPGRLLDH+ G + L + +VLDEAD+ML +GFI + IMA++P Sbjct: 176 RMESGVDLLVATPGRLLDHVAAGVIRLDAVETVVLDEADQMLDLGFIPAIRQIMAKLPRQ 235 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 Q +FSATMP+ IR + F+++P+EV + I Q + K + L L Sbjct: 236 RQAVMFSATMPKPIRALAGEFLRDPREVAVSVESKPVDRIDQQVLLLAPEEKKDKLAWLL 295 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 + AI+F RTK+ +V LE G +AA++G+ +Q RE+ L++ + GR+ +L+ Sbjct: 296 ADVAVERAIVFTRTKHGADKVTRHLEDAGIGAAAIHGNKSQGQRERALDQFRSGRIRVLV 355 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATD+AARG+DV+ +S VVN+++P ESYVHRIGRT RAG G A+ VE E LR+I Sbjct: 356 ATDIAARGIDVDNVSHVVNFELPNVPESYVHRIGRTARAGAEGVAISLVEPSELPYLRDI 415 Query: 361 ERTMKL 366 E + Sbjct: 416 ETLIGR 421 >UniRef50_C6CYC6 DEAD/DEAH box helicase domain protein n=89 Tax=Firmicutes RepID=C6CYC6_PAESJ Length = 578 Score = 547 bits (1410), Expect = e-154, Method: Composition-based stats. Identities = 165/396 (41%), Positives = 247/396 (62%), Gaps = 1/396 (0%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 T F +G+ + + L G P+P+Q + IP LL+G+DV+ AQTG+GKT AF+LP Sbjct: 1 MSTEFISMGIIPELTDVLQSNGITSPTPVQKKAIPVLLSGQDVIAQAQTGTGKTIAFTLP 60 Query: 64 LLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 +LQ +D + + Q L+L PTRELA+Q+ + + + G V+A YGGQ D Q+R L Sbjct: 61 ILQRIDIDKEQVQALILTPTRELAIQITSELKKLAAAV-GAKVLAAYGGQDVDAQIRKLN 119 Query: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183 P IVV TPGRL+DH++R T++L KL LVLDEAD+ML MGF+ +V+ I+ Q P QT Sbjct: 120 NSPHIVVATPGRLIDHMRRETINLGKLKMLVLDEADQMLHMGFLPEVQNIVDQTPRARQT 179 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAE 243 LFSATMP+ I+R+ +MK P +++IQS+ T +I Q + +AL+ +E + Sbjct: 180 MLFSATMPDQIKRLAENYMKTPVDIKIQSANVTLDNIKQLVIETTDRGRQKALISMIETQ 239 Query: 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 303 A+IF RTK ++ + L+ G+ S L+GD+ QA REQ ++R +D +L IL+ATD Sbjct: 240 RPYLAVIFCRTKVRAKKLNKDLQDLGFESDELHGDLTQAKREQVMKRFRDAKLQILVATD 299 Query: 304 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 363 VAARGLDVE ++ V N+D+P DSE Y+HRIGRTGRAG+ G A+ +R + +IER+ Sbjct: 300 VAARGLDVEGVTHVFNFDVPTDSEIYIHRIGRTGRAGQRGTAITIASPYDRAAVAHIERS 359 Query: 364 MKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSD 399 + + + + K + +++ + + D Sbjct: 360 INAILERRTIEADGTIVKNTAPRSSSEGKSYDKKPD 395 >UniRef50_Q4FSS4 Possible ATP-dependent DEAD/DEAH box RNA-helicase n=5 Tax=Proteobacteria RepID=Q4FSS4_PSYA2 Length = 567 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 165/379 (43%), Positives = 227/379 (59%), Gaps = 7/379 (1%) Query: 3 EFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSL 62 E + TF DL + PIL AL GY P+PIQAE IP L GRD+L AQTGSGKTAAF + Sbjct: 41 ENKVTFTDLNIAKPILSALERSGYTHPTPIQAEAIPFALQGRDLLLSAQTGSGKTAAFVI 100 Query: 63 PLLQNLDPEL---KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119 P+L L K + L+L PTRELA QV +++ +SK MRG+ V L GG Y+ Q+ Sbjct: 101 PVLDRLSRATSFDKLTKALILTPTRELAQQVHDSVRTYSKDMRGLFCVPLVGGAPYNGQI 160 Query: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179 AL++G Q++V TPGRLLDH+ G +DLS L LVLDEAD ML MGF +D+ I+ P Sbjct: 161 TALKKGVQVIVATPGRLLDHINAGRVDLSSLEILVLDEADRMLDMGFADDISDILRAAPI 220 Query: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWG-MRKNEALVR 238 QT + SAT + +I F K P+ V I+ I + + KN L + Sbjct: 221 DRQTIMCSATWDGPVGKIAASFTKNPERVSIKVESA---HIEEKVYYCDDFDHKNRLLDK 277 Query: 239 FLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDI 298 + +D + IIF TK +T ++A+ L+ G+ ++ L+GD+ Q+ R + ++ L++G+ I Sbjct: 278 IVCHKDMEQIIIFAATKRSTEKLAKQLQEAGHKASFLHGDLPQSKRNRIVQDLRNGKCKI 337 Query: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLR 358 L+ATDVAARGLDV +S V+NYD+P +E YVHRIGR GRAGR G A+ +R L Sbjct: 338 LVATDVAARGLDVPALSHVINYDLPRQTEDYVHRIGRCGRAGRTGVAISLCSMDDRPQLN 397 Query: 359 NIERTMKLTIPEVELPNAE 377 I R + + + E Sbjct: 398 AINRYLDRKMEASVIEGME 416 >UniRef50_A9M0D7 ATP-dependent RNA helicase, putative n=21 Tax=Neisseria RepID=A9M0D7_NEIM0 Length = 457 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 161/433 (37%), Positives = 235/433 (54%), Gaps = 12/433 (2%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 F+ LGL ++ AL GYE P+PIQA IP L G D+L AQTG+GKTAAF LP Sbjct: 1 MSNPFSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLP 60 Query: 64 LLQNLD--------PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRY 115 L+ L P + ++LVL PTRELA Q+ + + + K++ + L+GG Sbjct: 61 SLERLKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLP-LRHTVLFGGMNM 119 Query: 116 DVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMA 175 D Q LR G +IVV T GRLLDH+K+ + L+K+ +VLDEAD ML MGFI+D+ IM Sbjct: 120 DKQTADLRAGCEIVVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQ 179 Query: 176 QIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA 235 +P QT LFSAT IR++ + FM P+ V + + TT ++ Q V ++K Sbjct: 180 MLPRQRQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTIQKRNL 239 Query: 236 LVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGR 295 L R + + I+F +TK + V L R ++ A++GD +Q R +TL KDG Sbjct: 240 LERLIVDLHMNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGN 299 Query: 296 LDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERR 355 L +L+ATD+AARGLD+ + V+NY++P E YVHRIGRTGRAG G A+ ++ E++ Sbjct: 300 LRVLVATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQK 359 Query: 356 LLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAE 415 + +I+ + + E + E+ AK ++ + R +K Q Sbjct: 360 MFESIKELTGNKLLIERIEGFEP---QWWEQGGAKPEKPEMREPRQRNRYESAKAQREKN 416 Query: 416 GEELDLETLAAAL 428 + A A Sbjct: 417 TRPENAANDAGAA 429 >UniRef50_B6YWR7 DEAD/DEAH box RNA helicase n=3 Tax=Thermococcus RepID=B6YWR7_THEON Length = 403 Score = 545 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 177/385 (45%), Positives = 251/385 (65%), Gaps = 6/385 (1%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNG-RDVLGMAQTGSGKTAAFSLPLL 65 +F +LGL L A+ G+ +P+ IQ E IP LL+G D++G +QTG+GKTAAF+LP++ Sbjct: 2 SFENLGLSEATLVAVRRKGFSQPTDIQKEVIPRLLSGDADIIGQSQTGTGKTAAFALPII 61 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 + +D + K+ Q ++LAPTRELA+QVA+ + + + V V A+YGGQ Q+RAL +G Sbjct: 62 EAIDEKEKSVQAIILAPTRELALQVADEIKSL-RGRKRVYVYAVYGGQPIGPQIRALERG 120 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 +VVGTPGR+LDH++RGTLDLSK+ +LDEAD ML MGFI+D+E I + P+ + + Sbjct: 121 THVVVGTPGRVLDHIRRGTLDLSKVKFFILDEADRMLDMGFIDDIEAIFRETPKKKRVLM 180 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSATMP I R+ RR+M + + +++ S + Q Y V RK L + L D Sbjct: 181 FSATMPREILRLARRYMNDYEVIKVSSDELVPGMVEQEYIEVVPARKFSTLKKILS--DD 238 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 I+F TK T E++E L + GY++ ALNGDM+QA RE+T R K R IL+ATDVA Sbjct: 239 FYGIVFCATKRETRELSEKLRKQGYSAEALNGDMSQAARERTFWRFKTKRTRILVATDVA 298 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARGLDV+ IS +VNY +PM +E YVHRIGRTGR G+ G+A+ F+ E + LR I Sbjct: 299 ARGLDVQDISHIVNYSLPMTAEDYVHRIGRTGRMGKKGKAVTFIMPGEFKRLRYIASVAG 358 Query: 366 LTIPEVELPNAELLGKRRLEKFAAK 390 + I + EL +E L + E++ + Sbjct: 359 VDIQKSEL--SEELPREYHERYKRE 381 >UniRef50_Q0G0P8 Superfamily II DNA and RNA helicase n=1 Tax=Fulvimarina pelagi HTCC2506 RepID=Q0G0P8_9RHIZ Length = 457 Score = 544 bits (1403), Expect = e-153, Method: Composition-based stats. Identities = 155/370 (41%), Positives = 235/370 (63%), Gaps = 6/370 (1%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 TTF GL P+ AL L P+PIQ IPH L GRD+LG+AQTG+GKTAAF+LP Sbjct: 2 TSTTFDGFGLAEPLTRALARLELTTPTPIQERAIPHALAGRDMLGIAQTGTGKTAAFALP 61 Query: 64 LLQNL-----DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQ 118 LL +L P + + L+L+PTRELAVQ+AE++ D S+ ++ ++GG Q Sbjct: 62 LLHHLMTVGGKPTTRTTKALILSPTRELAVQIAESIADLSEGTP-ISHCVVFGGVSVRPQ 120 Query: 119 LRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP 178 ++AL +G I+V TPGRLLD +++ +DL + L+LDEAD ML MGF+ DV I+ + P Sbjct: 121 IQALARGVDILVATPGRLLDLMEQRAIDLRETRHLILDEADRMLDMGFVRDVMKIVGKCP 180 Query: 179 EGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVR 238 + Q+ +FSATMP+ I ++++ + PQ+V + +V T I+QS ++V K L+ Sbjct: 181 DDRQSMMFSATMPKPIEDLSKKILTNPQKVSVTPAVVTVEKIAQSVFSVPQRAKKHWLID 240 Query: 239 FLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDI 298 F+ D ++F RTK+ + L++ G + A++G+ +Q R++ L +DG +D+ Sbjct: 241 FVSKNDTGRIVVFTRTKHGANRLTSDLDKAGIQALAIHGNKSQTARQKALGAFQDGEIDV 300 Query: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLR 358 L+ATD+ ARG+ V+ IS VVN+D+P + ESYVHRIGRT RAGR+G+A+ V+ ER L+ Sbjct: 301 LVATDIVARGIHVDDISHVVNFDLPEEPESYVHRIGRTARAGRSGQAIALVDPSERAKLK 360 Query: 359 NIERTMKLTI 368 I + + + Sbjct: 361 QIIKLTGIDL 370 >UniRef50_Q2NB74 DNA and RNA helicase n=7 Tax=Alphaproteobacteria RepID=Q2NB74_ERYLH Length = 492 Score = 544 bits (1403), Expect = e-153, Method: Composition-based stats. Identities = 153/380 (40%), Positives = 223/380 (58%), Gaps = 11/380 (2%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 TTF LGL P+L+AL+ GY +P+PIQA+ IP +L GRD+LG+AQTG+GKTAAF LP + Sbjct: 4 TTFDQLGLSQPVLQALDMKGYNEPTPIQAQAIPPVLEGRDLLGIAQTGTGKTAAFMLPSI 63 Query: 66 QNL-----DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 L K+ ++LVLAPTRELA Q+A++ D+ M G+ V ++ GG Sbjct: 64 DRLREADNQTPFKSCRMLVLAPTRELAGQIAQSAKDYGA-MAGLKVHSIVGGTSVGKDRN 122 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 L +G I+V TPGRLLD + + L+ + LVLDEAD+ML +GFI + I +P Sbjct: 123 KLHRGTDILVATPGRLLDLIDQKAFKLNAVEILVLDEADQMLDLGFIHALRQINDLVPAE 182 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 QT FSATMP+ I+ + ++ + P +V + + TT I Q + V K + L Sbjct: 183 RQTLFFSATMPKQIQELVGKYCRNPVKVSVTPAATTAERIDQYLFMVQQDEKQALIEMIL 242 Query: 241 EAE-----DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGR 295 + + ++F RTK+ V + L + G S A++G+ +Q R++ L+ K + Sbjct: 243 KGRHAVPGKQERILVFTRTKHGADRVVKKLRQAGIESNAIHGNKSQPQRQRALDEFKRAK 302 Query: 296 LDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERR 355 ILIATDVAARG+D+ +S V+NY++P E YVHRIGRT RAG+ G A+ F ER Sbjct: 303 TPILIATDVAARGIDIPGVSHVINYELPNVPEQYVHRIGRTARAGKDGVAIAFCAEDERA 362 Query: 356 LLRNIERTMKLTIPEVELPN 375 L++I++ + LP Sbjct: 363 YLKDIQKNTDAEFDRLPLPE 382 >UniRef50_D2L498 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L498_9DELT Length = 492 Score = 543 bits (1401), Expect = e-153, Method: Composition-based stats. Identities = 173/482 (35%), Positives = 247/482 (51%), Gaps = 30/482 (6%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +F L A I E + LGYE P+PIQAE IPH+ GRD++G+AQTG+GKTAAF LP++ Sbjct: 2 SFDSFCLHATITENIKRLGYENPTPIQAEAIPHVTEGRDLMGLAQTGTGKTAAFLLPIIH 61 Query: 67 NL---DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 L E + + L+LAPTRELA Q+ A D + R + +YGG Q RALR Sbjct: 62 RLMTTKSEKRGVRALILAPTRELAEQIYRAGLDLGRGTR-LRAAVIYGGVGMFPQTRALR 120 Query: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183 QG I+V PGRLLDH+ +G + L LVLDEAD M MGF+ D++ I++ +P QT Sbjct: 121 QGVDIIVACPGRLLDHMNQGNVRFDALETLVLDEADHMFDMGFLPDIKRILSALPSERQT 180 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAE 243 LFSATMP AI + + +P VRI + + + + + +K L+ LE Sbjct: 181 LLFSATMPPAISGLAHETLTDPVTVRIGH-MAPLSTVEHAIYPISHTQKAPLLLHLLEEA 239 Query: 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 303 + I+F RTK+ +A L R+G+ + L G+++Q R+ ++ + G +L+ATD Sbjct: 240 GKQSVIVFTRTKHRAKNLALQLCRSGHKATCLQGNLSQRQRQIAMDGFRRGSFQVLVATD 299 Query: 304 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 363 +AARG+DV ++ VVN+DIP +E+Y HRIGRTGRA G+A FV + ++R IE Sbjct: 300 IAARGIDVSQVGHVVNFDIPDTAEAYTHRIGRTGRAEHEGQAHTFVTGEDMGMVRAIESH 359 Query: 364 MKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLET 423 MK +P E+ E +A + Sbjct: 360 MKKPLPRREVEGFEPDPSEFRRSYAPAPRYPARGRQGGYGGR------------------ 401 Query: 424 LAAALLKMAQGERTLIVPPDAPMRPKREFR-DRDDRGPRDRNDRGPRGDREDRPRRERRD 482 G R + RP+ E +G R R+DR R +RPR+ER Sbjct: 402 ------PQQGGYRGQGDRARSSDRPQGERSFSERPQGDRPRDDRARPDTRTERPRQERPQ 455 Query: 483 VG 484 Sbjct: 456 AA 457 >UniRef50_C6ATS7 DEAD/DEAH box helicase domain protein n=15 Tax=Alphaproteobacteria RepID=C6ATS7_RHILS Length = 580 Score = 543 bits (1400), Expect = e-153, Method: Composition-based stats. Identities = 164/494 (33%), Positives = 246/494 (49%), Gaps = 15/494 (3%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 T F LG+ PI+ L LG E P+PIQ IP LL GRD++G+AQTG+GKTAAF LPL+ Sbjct: 23 TNFESLGVSKPIIATLFQLGIETPTPIQEHSIPLLLEGRDLIGLAQTGTGKTAAFGLPLI 82 Query: 66 QNLDPELKAP-----QILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 + L + + P + L+LAPTREL Q+AE++ F + + + + GG + Q Sbjct: 83 EKLLADERRPDNRTTRTLILAPTRELVNQIAESLKKFIR-KSSLRINVVVGGVSINKQQL 141 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 L +G I+V TPGRLLD + R + L+ + LVLDEAD+ML +GF+ D+ I +P+ Sbjct: 142 QLEKGTDILVATPGRLLDLINRRAITLTAVRYLVLDEADQMLDLGFVHDLRKIAKMVPKK 201 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVW-GMRKNEALVRF 239 QT LFSATMP+AI + ++ +P +V + + Q V K E L + Sbjct: 202 RQTMLFSATMPKAIADLAGEYLVDPVKVEVTPPGKAADKVEQYVHFVAGKNDKTELLRKS 261 Query: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299 L A++F+RTK+ ++ + LE GY+ A+++G+ +Q RE+ L+ +DG + L Sbjct: 262 LTENPDGRAMVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIKTL 321 Query: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359 IATDVAARG+D+ +S V NYD+P ++YVHRIGRT RAGR G A+ F E +LLR+ Sbjct: 322 IATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEAKLLRD 381 Query: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEL 419 IER M + I + + + + E Sbjct: 382 IERLMGIDITVASGEAPANISGGPRRANGNGNNRNRNGGQGREGQGRGEGRGDQNRSEHR 441 Query: 420 DLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRE 479 + R + + + + R+ + RG R Sbjct: 442 GNRQ--------ERRPRREGEGSEVRAGGEERRPRPERQTSRNEDFRGQRRGETTPDLGP 493 Query: 480 RRDVGDMQLYRIEV 493 D+ +R Sbjct: 494 DNDLASTSDFRASA 507 >UniRef50_C1AE59 ATP-dependent RNA helicase RhlE n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AE59_GEMAT Length = 498 Score = 543 bits (1400), Expect = e-153, Method: Composition-based stats. Identities = 169/496 (34%), Positives = 249/496 (50%), Gaps = 14/496 (2%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 TF+ L L + + L +LG+ +P+PIQ E IP L GRDVL A TGSGKT AF LP Sbjct: 1 MTMTFSSLQLHPSLQQGLKELGFARPTPIQGEAIPPALEGRDVLACAMTGSGKTYAFLLP 60 Query: 64 LLQNLDPELKA-PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 +L L + + + LVL PTRELA Q+ E++ D + H + A++GG Q A Sbjct: 61 ILHQLMSKPRGNTRALVLTPTRELAAQILESLQDVTTHTP-LTGAAVFGGVGMGPQEHAF 119 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP-EGH 181 R G ++V TPGRLLDH ++ L +L LVLDEAD ML MGF+ +++ I+ +P Sbjct: 120 RSGVDVIVATPGRLLDHFRQPYAKLDQLEYLVLDEADRMLDMGFLPEIKKILRHLPNRKR 179 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 QT FSATMP I +T+ + +P + +Q I+Q+ + V K+ LV L+ Sbjct: 180 QTLFFSATMPPPIAALTQEMLNKPVTLNLQRQAAPAKGITQAVYPVSQELKSALLVALLK 239 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 D A++F RTK+ +A L G + ++G+ +Q+ R Q L KDG +L+A Sbjct: 240 RGDMPQALVFTRTKHRANRLASQLVTAGIKAERIHGNRSQSQRTQALAGFKDGSYQVLVA 299 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 TD+AARG+DVE + VVN+D+P+ +E Y+HR+GRT RA G A FV E L+ IE Sbjct: 300 TDIAARGIDVEALGHVVNFDVPVAAEDYIHRVGRTARAEATGEAFTFVSPEEEGELKLIE 359 Query: 362 RTMKLTIPEVELPNAELLGK--RRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEL 419 R +K +P V +P+ + K ++LE A+ ++ + +K+ +E Sbjct: 360 RAIKRALPRVTVPDFDYHAKPTQKLEVPIAERIAEIRKKKAEDRARAAAKVARRTAAQES 419 Query: 420 DLETLAAALLK---------MAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRG 470 + +A K + RGP +GP Sbjct: 420 EAARKSAKDAKPSSGGASSGSRRRGPASGGGTGGAAGGGAAGGSGAPRGPARGPSKGPAR 479 Query: 471 DREDRPRRERRDVGDM 486 P R GD Sbjct: 480 GASRGPSRGPARGGDS 495 >UniRef50_C8WL27 DEAD/DEAH box helicase domain protein n=3 Tax=Eggerthella lenta DSM 2243 RepID=C8WL27_EGGLE Length = 508 Score = 543 bits (1400), Expect = e-153, Method: Composition-based stats. Identities = 175/476 (36%), Positives = 253/476 (53%), Gaps = 14/476 (2%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 FADLGL L A+ LGYE P+P+Q + IP +L GRD++ A TG+GKTAAF LP+L Sbjct: 3 NFADLGLSEAALAAVERLGYENPTPVQLQAIPLVLEGRDLIAAASTGTGKTAAFLLPILS 62 Query: 67 NL---DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 L +AP++LV++PTRELA Q+++ ++ G V ++GG Y Q+ +R Sbjct: 63 TLPRGKRGKRAPRVLVVSPTRELAQQISQTCMQITRKT-GHYVTTVFGGTPYGPQINEIR 121 Query: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183 +G +++ TPGRL D + +G +DL + LVLDEAD ML MGF+ V TI+ P QT Sbjct: 122 RGTDVLIATPGRLNDLMNKGVVDLGGIKSLVLDEADRMLDMGFLPAVTTIVDATPADRQT 181 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAE 243 LFSAT+ +I++ + +P V I + T + Q + +K E L LE + Sbjct: 182 LLFSATIDHSIQKNLGSLLNDPAVVEIARNGETAQTVEQFMMPIANFKKPELLQALLEEK 241 Query: 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 303 D I+F RTKN T + AEAL GY + +++ D +Q R++ L+ + GR IL+ATD Sbjct: 242 GSDRVIVFARTKNRTEDCAEALCDAGYRAESIHSDKSQGQRKRALDNFRRGRTSILVATD 301 Query: 304 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 363 V ARG+DV + V+N+D+P E YVHRIGRTGRAG G A+ FV RR + +IE+ Sbjct: 302 VLARGIDVPDVDHVINFDLPDMPEDYVHRIGRTGRAGEQGFAVSFVTRESRRTMSDIEKL 361 Query: 364 MKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLET 423 + +P +EL EL + ++ + R +K GE+ D E Sbjct: 362 IGKNVPLMELETYELDMTVLEKGKKGAPKKGGYKGNKGSGRPAGAKRSDKRGGEKRDFER 421 Query: 424 LAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRE 479 R + P R KR R G + GPR + D +R Sbjct: 422 --------RSDSRAEGRSDNRPGRGKRAEGKRSFDGAAKPD--GPRSNNMDHAKRR 467 >UniRef50_A6LUG3 DEAD/DEAH box helicase domain protein n=33 Tax=Firmicutes RepID=A6LUG3_CLOB8 Length = 480 Score = 543 bits (1400), Expect = e-153, Method: Composition-based stats. Identities = 158/430 (36%), Positives = 248/430 (57%), Gaps = 3/430 (0%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 F + IL+++ LGY+ PS +Q + IP +L +D++ +QTGSGKTAAF +P Sbjct: 1 MNNEFTKFKISDEILKSIEGLGYKNPSKVQEKVIPEILLNKDIIVKSQTGSGKTAAFGIP 60 Query: 64 LLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 L + +D PQILVL PTRELAVQV+E +T+ + R + V+++G + Q R L+ Sbjct: 61 LCEKVDWNENIPQILVLTPTRELAVQVSEDITNIGRFKR-IKSVSIFGKEPISEQERKLK 119 Query: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183 Q +VVGTPGR+LDH+ RG+L+L+++ V+DEADEML MGFI VE I+ ++P+ T Sbjct: 120 QKTHVVVGTPGRILDHIDRGSLNLAQIKYFVIDEADEMLNMGFIGQVEGIIRRLPKKKVT 179 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAE 243 LFSAT+PE I+ + ++M +P ++ I + +I + + K E L L E Sbjct: 180 MLFSATIPEEIKVLCDKYMNKPVDISINNQKLINENIDHNLYYTNYEEKIEKLNDILITE 239 Query: 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 303 + +IF +TK V + L+ GY+ ++G M Q R ++ + G IL++TD Sbjct: 240 KPETVVIFAKTKENVDTVFQWLKSKGYSVNRIHGGMLQKERLSIMDGFRLGDFRILVSTD 299 Query: 304 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 363 +A+RG+DV+ I+ V+NYD+P++ E+YVHRIGRTGRAG G+A+ F N + +LL IE Sbjct: 300 LASRGIDVKGITHVINYDLPVEKEAYVHRIGRTGRAGEKGKAISFCVNEKDKLLSEIEEF 359 Query: 364 MKLTIPEVELPNAELLGKRRLE--KFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDL 421 + IP LP ++ K + E K ++ E + + +++ Sbjct: 360 IGFKIPVYNLPEKIMVEKEKSEGIKTLKSKPKRKEEKSKTINNNITKIYLNGGKKKKIRA 419 Query: 422 ETLAAALLKM 431 + A+ KM Sbjct: 420 GDIVGAICKM 429 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 33/94 (35%) Query: 459 GPRDRNDRGPRGDREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRY 518 + + + + + + + ++ + G+ + IVGAI I S Sbjct: 377 KEKSEGIKTLKSKPKRKEEKSKTINNNITKIYLNGGKKKKIRAGDIVGAICKMDGIKSED 436 Query: 519 IGNIKLFASHSTIELPKGMPGEVLQHFTRTRILN 552 IG I + S S +++ G V+ I Sbjct: 437 IGIIDVQDSVSYVDILNGKGKRVIDELKNITIKG 470 >UniRef50_Q12QV2 DEAD/DEAH box helicase-like protein n=27 Tax=Gammaproteobacteria RepID=Q12QV2_SHEDO Length = 433 Score = 543 bits (1399), Expect = e-153, Method: Composition-based stats. Identities = 150/388 (38%), Positives = 226/388 (58%), Gaps = 6/388 (1%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F IL A+ + GY+ +P+Q + IP + G DVL AQTG+GKTAAF+LP+LQ Sbjct: 3 FESFSFAPEILRAIAECGYQNMTPVQQQAIPAIRRGEDVLASAQTGTGKTAAFALPILQK 62 Query: 68 LDPELKAPQ-----ILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 + Q L+L PTRELA QVA+ ++ +SKHM ++V+ +YGG + Q + L Sbjct: 63 MHERPMTVQHSNARALILTPTRELAAQVADNISAYSKHM-NISVLTIYGGMKMATQAQKL 121 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 +QG I+V TPGRLL+H+ L LS + LVLDEAD ML MGF D++ I+ + + Q Sbjct: 122 KQGADIIVATPGRLLEHIVACNLSLSNVEFLVLDEADRMLDMGFSTDIQKILQAVNKKRQ 181 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 LFSAT A++++ + +P+ + TT +SQ + V RK E L + Sbjct: 182 NLLFSATFSTAVKKLANDMLDKPKIISADKQNTTAATVSQVVYPVEQRRKRELLSELIGT 241 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 +++ ++F T+ ++ L +G SA ++G+ Q R + L +G++ +L+AT Sbjct: 242 KNWQQVLVFTATRADADKLVTELNLDGIPSAVVHGEKAQGSRRRALREFIEGKVRVLVAT 301 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 +VAARGLD++ + VVNYD+P +E YVHRIGRTGRAG+ G A+ FV E R L +IE+ Sbjct: 302 EVAARGLDIQGLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEERTLADIEK 361 Query: 363 TMKLTIPEVELPNAELLGKRRLEKFAAK 390 + I + +P E+ + L K K Sbjct: 362 LIGQKIRRITVPGYEVSSRELLLKTIEK 389 >UniRef50_B0SYC6 DEAD/DEAH box helicase domain protein n=33 Tax=Alphaproteobacteria RepID=B0SYC6_CAUSK Length = 678 Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats. Identities = 179/500 (35%), Positives = 265/500 (53%), Gaps = 13/500 (2%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 T F++LGL L+A+ D GY +PIQA IP L G+DVLG+AQTG+GKTAAF+LPL+ Sbjct: 2 TEFSELGLSPTTLQAVADTGYTTATPIQAAAIPVALAGQDVLGIAQTGTGKTAAFTLPLI 61 Query: 66 QNL---DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 L + + P+ LV+APTRELA QVA + ++K + ++ L GG + Q + L Sbjct: 62 DKLMNGRAKARMPRALVIAPTRELADQVASSFEKYAKGTK-LSWALLIGGVSFGDQEKKL 120 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 +G +++ TPGRLLDH +RG L ++ + LV+DEAD ML MGFI D+E I P Q Sbjct: 121 DRGVDVLIATPGRLLDHFERGKLLMTGVQFLVVDEADRMLDMGFIPDIERIFKMTPPKKQ 180 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMR---KNEALVRF 239 T FSATMP I R+T++F+K+P + TT +I+Q V K AL Sbjct: 181 TLFFSATMPPEITRLTKQFLKDPVRIEASRPATTNENITQLMVKVPSSDPKAKRLALRAL 240 Query: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299 +E + I+F K VA++L+ +G+++AA++GD++Q+ R +TL +DG L IL Sbjct: 241 IEKAQIETGIVFCNRKTEVDVVAKSLKSHGFDAAAIHGDLDQSQRTKTLAAFRDGSLKIL 300 Query: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359 +A+DVAARGLD+ +S V NYD+P ++ YVHRIGRTGRAGR+G + V + + Sbjct: 301 VASDVAARGLDIPAVSHVFNYDVPHHADDYVHRIGRTGRAGRSGVTYMLVTPADDKGFDK 360 Query: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEL 419 + + + T E +L + + G +++ K + + Sbjct: 361 VVKLIGSTPTEEKL-DLDYSGAVTIKREGDK--RGGGRDRAPRGGDRERGRDRDRNRAPT 417 Query: 420 DLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRE 479 + +AAA L+ A P A R R + R ++ D P E Sbjct: 418 EPSDVAAANLEAAITGVPA--TPVASTVMSDPPAKRPARVRKPRGEKAAEAVVADAPEAE 475 Query: 480 -RRDVGDMQLYRIEVGRDDG 498 R + E GR D Sbjct: 476 ARVAIARPAAPAAETGRRDR 495 >UniRef50_A3WBD4 DNA and RNA helicase n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WBD4_9SPHN Length = 497 Score = 542 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 165/457 (36%), Positives = 245/457 (53%), Gaps = 16/457 (3%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 TFADLGL +L+A+ D GY +P+ IQAE IP +L +D++G+AQTG+GKTA+F LP++ Sbjct: 37 TFADLGLSPELLKAVEDAGYTEPTAIQAEAIPAVLMMKDLIGIAQTGTGKTASFVLPMID 96 Query: 67 NLDPELKA---PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 + + P+ L+L PTRELA QVAE + + + + L GG + QL+ L Sbjct: 97 VMAAGRRRALMPRSLILEPTRELAAQVAENFEKYGAN-HDLKMALLIGGVQMGDQLKTLD 155 Query: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183 +G +++ TPGRL+D +RG + L+ LV+DEAD ML MGFI D+E I ++PE QT Sbjct: 156 EGVDVLIATPGRLMDLFERGKILLNGCELLVIDEADRMLDMGFIPDIEFICDKLPETRQT 215 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAE 243 LFSATMP I ++ ++F+ P+ + + TT DI+ V +K + L L + Sbjct: 216 MLFSATMPAPIEKLAKKFLSNPKRIETTRAATTNKDITAFKVPVKARQKRDTLEWLLAND 275 Query: 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 303 + AIIF K E+ + L+R G+ S ++GDM+Q+ R + L+R K G ++IL+A+D Sbjct: 276 QVETAIIFANRKTTVRELNKHLQRQGFASGEIHGDMDQSSRLKELDRFKSGDVNILVASD 335 Query: 304 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 363 VAARGLD++ +S V N+D P + YVHRIGRTGRAG GRA V + + + N+E+ Sbjct: 336 VAARGLDIKGVSHVFNFDTPWHPDDYVHRIGRTGRAGAKGRAFTLVADEDAEAIANVEKL 395 Query: 364 MKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLET 423 I E + + A E+ D + E Sbjct: 396 TGAKIKVF---GKEDVRVELADGSAKNTGSDDEAKDEKPAEKKSRSRSRKRDDEGDAPR- 451 Query: 424 LAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGP 460 + P RP+R + DD P Sbjct: 452 --------KPRRESAEDKPARKSRPRRRDDESDDPVP 480 >UniRef50_Q92841 Probable ATP-dependent RNA helicase DDX17 n=25 Tax=Bilateria RepID=DDX17_HUMAN Length = 650 Score = 542 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 133/367 (36%), Positives = 207/367 (56%), Gaps = 10/367 (2%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F +++ L D + +P+PIQ + P L+GRD++G+AQTGSGKT A+ LP + + Sbjct: 94 FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVH 153 Query: 68 LDPEL-----KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 ++ + P LVLAPTRELA QV + D+ K + +YGG Q+R L Sbjct: 154 INHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGK-CSRLKSTCIYGGAPKGPQIRDL 212 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 +G +I + TPGRL+D L+ G +L + + LVLDEAD ML MGF + I+ QI Q Sbjct: 213 ERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 272 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQS-SVTTRPDISQSYWTVWGMRKNEALVRFLE 241 T ++SAT P+ +R++ F+++ ++ + + ++ +I Q K+ L++ +E Sbjct: 273 TLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLME 332 Query: 242 A---EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDI 298 E + IIFV TK ++ + R+G+ + ++GD +Q R+ L + G+ I Sbjct: 333 EIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPI 392 Query: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLR 358 LIATDVA+RGLDVE + V+NYD P SE YVHRIGRT R+ G A F + R Sbjct: 393 LIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQAR 452 Query: 359 NIERTMK 365 + + ++ Sbjct: 453 ELIKVLE 459 >UniRef50_Q3AZR1 DEAD/DEAH box helicase-like n=2 Tax=Synechococcus RepID=Q3AZR1_SYNS9 Length = 458 Score = 542 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 141/376 (37%), Positives = 218/376 (57%), Gaps = 5/376 (1%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 TF L L A + ++ + GY P+PIQA IP +L G+D++ AQTG+GKTAAF LP+++ Sbjct: 25 TFEQLELCAETVRSIKESGYLSPTPIQALTIPEVLQGKDIMASAQTGTGKTAAFILPIIE 84 Query: 67 NLDPELK----APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 L E K LVL PTRELA QV + ++K++ + A++GG Q++ L Sbjct: 85 LLRAEDKPKRYQVHSLVLTPTRELAAQVEASAKAYTKYLA-LRSDAVFGGVSIRPQVKRL 143 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 + G I+V TPGRLLD + + + L LVLDEAD ML MGFI D++ ++ +P+ Q Sbjct: 144 QGGVDILVATPGRLLDLINQKMIRFDNLKVLVLDEADRMLDMGFIRDIKKVIEYLPKNRQ 203 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 +FSAT I+++ + +P E++ P I RK + L ++ Sbjct: 204 NMMFSATFSTPIKKLALGLLNDPVEIKASVQNQAAPTIEHLVHPCDMARKVDLLCHLIKT 263 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 + ++F RTK+ +V + L ++A++G+ +Q R + LE K+G + IL+AT Sbjct: 264 NKWKQVLVFARTKHGADKVVKILCHQHMRASAIHGNKSQGARTRALEGFKNGDIKILVAT 323 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 D+AARG+D+ ++ V+N D+P +E YVHRIGRTGRAG AG A+ V E LL+ IE+ Sbjct: 324 DIAARGIDIHQLPYVINLDLPNVAEDYVHRIGRTGRAGEAGHAISLVAAEEALLLKAIEK 383 Query: 363 TMKLTIPEVELPNAEL 378 + +P+V++ E Sbjct: 384 FIGNPLPKVDVVGFEQ 399 >UniRef50_Q2RQT0 DEAD/DEAH box helicase n=59 Tax=root RepID=Q2RQT0_RHORT Length = 799 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 174/487 (35%), Positives = 259/487 (53%), Gaps = 13/487 (2%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 TFADLGL L A+ ++GY P+PIQ + IP++ GRDVLG+AQTG+GKTA+F+LP++ Sbjct: 2 TFADLGLSPETLRAIEEVGYTTPTPIQVQAIPYVQMGRDVLGIAQTGTGKTASFTLPMID 61 Query: 67 NL---DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 L + + P+ L+LAPTRELA QV+E T + K+ + +++ L GG+ + Q + L Sbjct: 62 ILASGKAKARMPRSLILAPTRELATQVSENFTLYGKYQK-LSMALLIGGESMNEQQKVLD 120 Query: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183 +G +++ TPGRL+D +RG++ L + LV+DEAD ML MGFI DVE I+A +P+ QT Sbjct: 121 RGVDVLIATPGRLIDLFERGSILLRDVKVLVIDEADRMLDMGFIPDVERIVALLPKIRQT 180 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAE 243 FSATM + IRR+ F+ P+EVRI+ + + Q+ V K EAL + L E Sbjct: 181 LFFSATMDKEIRRLADAFLMNPKEVRIEPTQKVAETVEQALIMVKASEKREALRQLLRRE 240 Query: 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 303 A IF K + ++L +G++ AL+GDM Q +R + LE+ K + +++ +D Sbjct: 241 TVTNAFIFCNRKRDVDVLYKSLSGHGFDILALHGDMPQYVRTERLEKFKRAEVQLMVCSD 300 Query: 304 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 363 VAARG+DV +S V N+D+P E Y+HRIGRTGRAGR GRA + + LR IE Sbjct: 301 VAARGIDVTEVSHVFNFDVPTHPEDYIHRIGRTGRAGRLGRAYTLATPEDAKYLRAIENL 360 Query: 364 MKLTIPEVELPNAELLGKRRLE-KFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLE 422 + TIP + + A ++ R + +A+ E Sbjct: 361 LGKTIPPDPQLELSDVAVEDVALAVAEDDRRPKRGGKGRPERGARRSGRGSADAERPRPL 420 Query: 423 TLAAALLKMAQGERTLIVP--------PDAPMRPKREFRDRDDRGPRDRNDRGPRGDRED 474 A A ER + P+ + R + N+R + Sbjct: 421 APERAANDQAPVERPAVEKTLAEQPVAERPPVERGQAERTAERPSSDRTNERASSDRSSE 480 Query: 475 RPRRERR 481 R ER Sbjct: 481 RASSERN 487 >UniRef50_B6R5V0 ATP-dependent rna helicase, dead/deah box family n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R5V0_9RHOB Length = 453 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 153/372 (41%), Positives = 231/372 (62%), Gaps = 6/372 (1%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 T F LG+ P AL GY +P+PIQ IP++L+G+D+LG+AQTG+GKTAAF++PLL Sbjct: 2 TDFDKLGVAKPFQIALKSKGYSEPTPIQENAIPYILDGKDLLGLAQTGTGKTAAFAVPLL 61 Query: 66 QNL-----DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 Q L K+ + L+L PTRELA Q+ + + ++ + + + GG + Q Sbjct: 62 QRLLESRYRAAPKSVRSLILTPTRELADQITKNIKAYAGRTK-MYTSCVVGGVPFPPQFH 120 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 AL++G ++V TPGRLLD ++ + +L VLDEAD+ML +GFI ++E I +P+ Sbjct: 121 ALQRGLDVLVATPGRLLDLHRKNGVSFDELEIFVLDEADQMLDLGFIAELEEIAYLLPKK 180 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 QT FSATMP IR ++ RF+ P EV TT ++Q + K L L Sbjct: 181 RQTLFFSATMPREIRDLSERFLTNPVEVSTAPPATTVETVTQQIAHLEKDAKFPLLKELL 240 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 E ++ + A++F TK + +A L +G + A++GDM+QA R++TL++ K G+L L+ Sbjct: 241 EKDECERALVFTLTKKGSARLAARLNADGVPAEAIHGDMSQAERQKTLDKFKRGKLKTLV 300 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATDVAARG+DV IS V+N+D+P +E+YVHRIGRT RAG++G A+ F +R +LR I Sbjct: 301 ATDVAARGIDVSDISHVINFDMPNATENYVHRIGRTARAGKSGTAITFCLPEDRGMLRAI 360 Query: 361 ERTMKLTIPEVE 372 ++ + I E++ Sbjct: 361 QKLIGKKIAEMD 372 >UniRef50_Q54CE0 Probable ATP-dependent RNA helicase ddx17 n=2 Tax=Eukaryota RepID=DDX17_DICDI Length = 785 Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 135/372 (36%), Positives = 211/372 (56%), Gaps = 11/372 (2%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F +++ + G+ P+PIQ++ P L GRD++G+A+TGSGKT AF LP + + Sbjct: 386 FTQAPFPGYLMKEIIGAGFPNPTPIQSQAWPIALKGRDIIGLAKTGSGKTLAFLLPSIVH 445 Query: 68 LDP-----ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 ++ E P +LVLAPTRELA+Q+ E F ++ +YGG Q+ AL Sbjct: 446 INAQPVLREDDGPIVLVLAPTRELALQIQEETNKFG-GTSQISNTCVYGGASKHTQVAAL 504 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 ++G +IV+ TPGRL+D L+ G +L +++ LVLDEAD ML MGF + I++QI Q Sbjct: 505 KKGVEIVIATPGRLIDILESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQ 564 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTT-RPDISQSYWTVWGMRKNEALVRFL- 240 T +FSAT P+ ++ + F+ + +V I S+ T ++ Q K E ++ FL Sbjct: 565 TLMFSATWPKEVQALAHDFLTDHIQVHIGSTEITANHNVRQIVEVCQDFEKKERMLSFLG 624 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 + I+F T+ ++ L+ +G+ S ++G+ +Q R+ L + K+G + I+I Sbjct: 625 SVGRDEKVIVFAETRKGVDDLQRVLQFSGFKSIGIHGNKSQPERDFVLSQFKNGMVPIMI 684 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATDVA+RGLD++ I VVNYD P E Y+HRIGRT RAG +G + + RL + Sbjct: 685 ATDVASRGLDIKDIKYVVNYDFPNTIEVYIHRIGRTARAGASGVSYSLLTTDNARLANEL 744 Query: 361 ERTM---KLTIP 369 + + K IP Sbjct: 745 IKVLTEAKQKIP 756 >UniRef50_C7MN05 DNA/RNA helicase, superfamily II n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MN05_CRYCD Length = 551 Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 167/480 (34%), Positives = 245/480 (51%), Gaps = 33/480 (6%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 TF DLGL L A++ LGY P+P+Q + IP +L GRDV+ A+TG+GKTAAFSLP Sbjct: 1 MSKTFHDLGLSEKALAAVDLLGYTDPTPVQEQAIPAVLAGRDVIAAAKTGTGKTAAFSLP 60 Query: 64 LLQNL--DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 + L + P +L++ PTRELA+Q+ +K G V + GG Y+ Q+ + Sbjct: 61 TMDRLGHARHGQGPLLLIVTPTRELALQIESVCRTIAKR-SGHRVTCVVGGVSYNPQIDS 119 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 LR+G +++ TPGRL+D + + L+++ LVLDEAD ML MGF+ D+ I+A P Sbjct: 120 LRRGTDVLIATPGRLIDLMNQDAAHLNQVETLVLDEADRMLDMGFLPDMRRIVAACPTQR 179 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 QT LFSAT+ AI + P V I T I Q V KN+ L+ L Sbjct: 180 QTLLFSATIDSAIEDNMAHLLNNPVFVEIAHRGETADTIEQYRIPVDHRHKNDLLIALLN 239 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 I+F RT++ L + G+ ++ D +Q R++ +E L+ G+ DIL+A Sbjct: 240 ERGGTRIIVFARTRHRVDTCVRKLRKAGFAVEPIHSDRSQNQRKRAIEALEAGKCDILVA 299 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 TDV ARG+D+ ++ VVN D+P E YVHRIGRTGRAG AG A+ FV + +LR+I+ Sbjct: 300 TDVLARGIDIPNVNYVVNLDMPDQVEDYVHRIGRTGRAGEAGCAISFVTPENKAILRDIQ 359 Query: 362 RTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDL 421 + + IPE+ + + + AAK + +D + Sbjct: 360 KLIGKDIPEMSVESFD--SSASDNALAAKATRANAQNDPE-------------------- 397 Query: 422 ETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDR-GPRDRNDRGPRGDREDRPRRER 480 L A E + +RE D R G + R + PRG++ +R ER Sbjct: 398 -------LATAAREDKSRKKAKSSRSSRREHNTEDQRAGGQQRGHKNPRGNKSNRNNSER 450 >UniRef50_Q9SQV1 DEAD-box ATP-dependent RNA helicase 40 n=14 Tax=Eukaryota RepID=RH40_ARATH Length = 1088 Score = 541 bits (1394), Expect = e-152, Method: Composition-based stats. Identities = 141/383 (36%), Positives = 208/383 (54%), Gaps = 10/383 (2%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 TF GL IL L G+ P+PIQA+ P L RD++ +A+TGSGKT + +P Sbjct: 436 TFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFI 495 Query: 67 NL----DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 L + P +L+LAPTRELA Q+ + F + R ++ LYGG QL+ L Sbjct: 496 LLRHCRNDSRNGPTVLILAPTRELATQIQDEALRFGRSSR-ISCTCLYGGAPKGPQLKEL 554 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 +G IVV TPGRL D L+ +D ++S LVLDEAD ML MGF + I+ +IP Q Sbjct: 555 ERGADIVVATPGRLNDILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQ 614 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQS--SVTTRPDISQSYWTVWGMRKNEALVRFL 240 T +++AT P+ +R+I + P +V I + I+Q V M K L + L Sbjct: 615 TLMYTATWPKEVRKIASDLLVNPVQVNIGRVDELAANKAITQYVEVVPQMEKERRLEQIL 674 Query: 241 EAEDFD-AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299 +++ IIF TK +A ++ R+ + + ++GD Q R+ L + + G+ +L Sbjct: 675 RSQERGSKVIIFCSTKRLCDHLARSVGRH-FGAVVIHGDKTQGERDWVLNQFRSGKSCVL 733 Query: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359 IATDVAARGLD++ I +V+NYD P E YVHRIGRTGRAG G A F ++ + + Sbjct: 734 IATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFFTEQDWKYAPD 793 Query: 360 IERTMKLTIPEVELPNAELLGKR 382 + + ++ +V P + R Sbjct: 794 LIKVLEGANQQVP-PQVRDIAMR 815 >UniRef50_B5IG60 DEAD/DEAH box helicase domain protein n=2 Tax=Aciduliprofundum boonei T469 RepID=B5IG60_9EURY Length = 451 Score = 540 bits (1393), Expect = e-152, Method: Composition-based stats. Identities = 151/384 (39%), Positives = 232/384 (60%), Gaps = 6/384 (1%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F D+ + AL + + +P+ +Q + IP + GRD++ ++TGSGKT AF +P+ +N Sbjct: 6 FEDMSISKGTKNALKEHNFVEPTEVQEKAIPLAIKGRDLIVQSKTGSGKTLAFLIPIFEN 65 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 L+ L+ +VL PTRELA QV K G V +YGG + Q+ L+ G Sbjct: 66 LNSGLE---AIVLVPTRELAQQVERVARSIGKA-HGKRTVVIYGGAPMERQIAGLK-GAS 120 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 +V+GTPGR++D ++RG L+L+ + VLDEAD ML MGFI+D++ I+ + P+ Q LFS Sbjct: 121 MVIGTPGRVMDLMRRGYLNLNGIRFFVLDEADRMLDMGFIDDIKWILQKTPKDKQMMLFS 180 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 ATMP I + RR+MK P+++ + T +++Q Y V + K L L +E Sbjct: 181 ATMPPEIISLARRYMKNPEKIILSEDEITAENVAQYYVEVGEINKIAKLSSLLISERGKY 240 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 +IF T+ T +AE L++ G+ + AL+GDM QA R +T++ K G++DIL++TDVAAR Sbjct: 241 -LIFCNTRRKTKNIAEILQKYGFKAFALHGDMRQATRTRTMDAFKQGKIDILVSTDVAAR 299 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 G+DV I+ VVNYD+P+ + YVHRIGRTGR G+A+ FV ++ R IE + Sbjct: 300 GIDVHGITHVVNYDVPLYPKDYVHRIGRTGRMDAHGKAITFVTREDKEYFRRIEDFIGKR 359 Query: 368 IPEVELPNAELLGKRRLEKFAAKV 391 IP++E+ N + +R K + + Sbjct: 360 IPKMEIKNVGKIKERIDYKEISDI 383 >UniRef50_C8PWG8 Cold-shock DEAD box protein A homolog n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PWG8_9GAMM Length = 777 Score = 540 bits (1391), Expect = e-151, Method: Composition-based stats. Identities = 195/644 (30%), Positives = 290/644 (45%), Gaps = 59/644 (9%) Query: 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 E F LGL +L+++ GY P+PIQA IP L GRD+L AQTGSGKTAAF LP+ Sbjct: 68 ENGFTALGLSGSLLKSIVATGYTTPTPIQARAIPAALEGRDLLLSAQTGSGKTAAFVLPI 127 Query: 65 LQNLDP-------------------ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVN 105 L L + K Q L+L PTRELA QV +++ + M+ + Sbjct: 128 LHQLSELQAKEKAAEKTASGKRGRQQPKVVQALILTPTRELANQVQDSIRKYGSAMKDLY 187 Query: 106 VVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMG 165 V L GG Y Q+RAL++G QI+V TPGRLLDH+ ++LS L+ LVLDEAD ML MG Sbjct: 188 SVPLVGGAAYSGQIRALKKGVQIIVATPGRLLDHINAQRVNLSDLTMLVLDEADRMLDMG 247 Query: 166 FIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYW 225 F +D+ I+ P QT + SAT + +I F K+P+ + I+ I + + Sbjct: 248 FADDINAILEATPAHRQTIMSSATWDGPVGKIAESFTKDPERINIKVETA---HIDEKVY 304 Query: 226 TVWG-MRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALR 284 KN+ L + + + AIIF TK ++ EVAE L++ + + L+GD+ Q+ R Sbjct: 305 FCDNFDHKNKLLEQLICDPERGQAIIFTATKRSSEEVAERLQQWDHKACYLHGDLPQSKR 364 Query: 285 EQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGR 344 + + L+ G+ DI++ATDVAARGLD+ I+ V NYD+P E YVHRIGR+GRAGR G Sbjct: 365 NRIVSDLRSGKFDIVVATDVAARGLDLPNITHVFNYDLPRQVEDYVHRIGRSGRAGRTGI 424 Query: 345 ALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYR 404 A+ +RR NI R +K I E ++ E R +EKF + + Sbjct: 425 AINLCSRDDRRQFGNIARYLKRDINEAQVEGLE---PRFVEKFEGRGKPNGRDGRGRGRS 481 Query: 405 ALLSKIQPTAEGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRN 464 S+ G + + K F +++ G N Sbjct: 482 GSDSRGGRDDRGSR-----------SQRFAGSSDRPSSERRFADKPRFDNQERYGKPASN 530 Query: 465 DRGPRGDREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKL 524 D R ++ +R + + D + GRDD R + + G+ Sbjct: 531 DSSARFEKRERFDKGHQGNSDSR-----FGRDDASAPRRHRDSDNHHGNSQG-------- 577 Query: 525 FASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERRE 584 P R +P + + + G +G+ G++ Sbjct: 578 --DFHRAAKSSDKPNFDRDSRQGNR---EPRQGEYADRRRDDNRSFNKDGFKGYQGDKPR 632 Query: 585 GGRNFSGERREGGRGD----GRRFSGERREGRAPRRDDSTGRRR 624 + + R G R + RF + + R + G R Sbjct: 633 YNTDRNSNERHGERPNRFEKNDRFGDKPFAKKTERSSEFRGDER 676 >UniRef50_Q7UJ92 Putative ATP-dependent RNA helicase rhlE n=1 Tax=Rhodopirellula baltica RepID=Q7UJ92_RHOBA Length = 485 Score = 539 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 165/378 (43%), Positives = 226/378 (59%), Gaps = 17/378 (4%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F DLGL P+L+ L GYE P+PIQA+ IP +L+G DVLG AQTG+GKTAAF+LP+LQ Sbjct: 4 FEDLGLTGPLLQGLEQAGYETPTPIQAQSIPEILDGNDVLGAAQTGTGKTAAFALPILQI 63 Query: 68 L---DPELKAPQ-------------ILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYG 111 + D E + P LVL+PTREL+ Q+ + K R + ++G Sbjct: 64 MWEDDQERREPSKRRGGRPGRRPIRTLVLSPTRELSAQIEANFRIYGKKTR-LRSTVIFG 122 Query: 112 GQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVE 171 G + Q+R L+ G +V TPGRLLD + +G +DL + LVLDEAD ML MGF+ DV+ Sbjct: 123 GVNQNPQVRELQSGVDTLVATPGRLLDLVNQGFIDLKDVEILVLDEADHMLDMGFLPDVK 182 Query: 172 TIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMR 231 I+ +P Q LFSATMP IR++ + +P ++I T I QS V Sbjct: 183 RILKFLPRDRQNLLFSATMPGPIRKLADEILVDPVTIQIAPQKPTVERIEQSICFVAQAD 242 Query: 232 KNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERL 291 K L F+E + + ++F RTK+ VA L + G +AA++G+ QA R +TL + Sbjct: 243 KPRLLNHFIETKATGSTLVFTRTKHGADAVARRLVKAGVKAAAIHGNKTQANRVRTLNKF 302 Query: 292 KDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVEN 351 K+ LD+L+ATDVAARG+D++ I V+NYD P E+YVHRIGRTGRAGR G ++F Sbjct: 303 KNDELDVLVATDVAARGIDIDGIQTVINYDTPNTPEAYVHRIGRTGRAGREGETVMFCGG 362 Query: 352 RERRLLRNIERTMKLTIP 369 E + IER +KL IP Sbjct: 363 HETKFFIAIEREIKLQIP 380 >UniRef50_D0MH79 DEAD/DEAH box helicase domain protein n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MH79_RHOM4 Length = 505 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 173/450 (38%), Positives = 254/450 (56%), Gaps = 13/450 (2%) Query: 13 LKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPEL 72 L + +A +G+ + P+Q +P+LL GRDV+ +QTGSGKT AF LPL + LDP Sbjct: 45 LPERMQQAARAIGWTELMPVQRRTLPYLLEGRDVIVQSQTGSGKTGAFLLPLFERLDPSR 104 Query: 73 KAPQILVLAPTRELAVQVAEAMTDFSKHMRG---VNVVALYGGQRYDVQLRALRQGPQIV 129 Q L+L PTRELA Q++EA + G + V +YGG RY QL+AL QG Q+V Sbjct: 105 GQVQALILTPTRELARQISEAFEQMKTGVSGAQSLRAVLVYGGVRYGPQLKALEQGAQVV 164 Query: 130 VGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSAT 189 +GTPGR+LD ++RG L L L LV DEADEML MGF + + +P TA+FSAT Sbjct: 165 IGTPGRILDLIERGALRLGALQVLVFDEADEMLSMGFYPAMRQLKRYLPRERNTAMFSAT 224 Query: 190 MPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAI 249 MP ++ + R F+K+P V + + I Y+ V M K+ ALV+ +E E+ ++AI Sbjct: 225 MPPRVQALAREFLKDPAFVSLSTDRIAAETIEHRYFIVPPMEKDRALVQLIELENPESAI 284 Query: 250 IFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGL 309 IF TK + + L+ GYN+ A+ GD+ Q RE+ ++RL+ G+L +L+ATDVAARG+ Sbjct: 285 IFANTKRDVEYLGQFLKNYGYNADAITGDLPQKQRERIMDRLRKGQLRLLVATDVAARGI 344 Query: 310 DVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIP 369 D+ +S V YD+P D E YVHR GRTGR G+ G ++ V E LR I R + + Sbjct: 345 DISDLSHVFMYDVPQDPEYYVHRSGRTGRVGKEGTTIVLVTPLEEARLRAIARQYDIPLE 404 Query: 370 EVELPNAELLGKRRLEKFAAKVQQQ------LESSDLDQYRALLSKIQPTAEGEELDLET 423 + LP E + +R E+ A ++ + L+ + ++ L+ ++ EE +L Sbjct: 405 KGTLPTPETVAERVAERAVALLEDRYRETTSLDRERIARFVPLVEQL----AQEEPELLA 460 Query: 424 LAAALLKMAQGERTLIVPPDAPMRPKREFR 453 + L + +G R I P E Sbjct: 461 MLVDALYVHEGHRRGIRSEAEAEAPSPEQS 490 >UniRef50_B2S409 ATP-dependent RNA helicase n=3 Tax=Treponema RepID=B2S409_TREPS Length = 649 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 197/600 (32%), Positives = 293/600 (48%), Gaps = 17/600 (2%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNG-RDVLGMAQTGSGKTAAFSLPL 64 +F +LGL L A+ G+ P+PIQA IP LL G +++ A+TG+GKTAAF LPL Sbjct: 46 VSFEELGLNEQSLAAVRLKGFRCPTPIQAAAIPRLLAGDANIIAKARTGTGKTAAFGLPL 105 Query: 65 LQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 +Q L + P LVL PTRELA QVA ++ + + + +YGG QLR L Q Sbjct: 106 IQELGSPCEHPGALVLVPTRELAAQVASELSSL-RIQKIPRIHTVYGGVSIAEQLRNLEQ 164 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 G +I+VGT GR++DH++RG+L+LS L +LDEADEML MGF+ED+E+I + + + Sbjct: 165 GGEIIVGTTGRVIDHIERGSLELSYLRYFILDEADEMLNMGFVEDIESIFSHANKDARVL 224 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 +FSATMP I I FM + V + RP I Q W V K EALVR ++ D Sbjct: 225 MFSATMPRQILSIASTFMGSYEVVEEVTPEEARPLIEQFMWVVRDADKIEALVRLIDVSD 284 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 ++F +TK VA++L+ Y+ AAL+GD+ Q+ RE+ LER + R IL+ATDV Sbjct: 285 NFYGLVFCQTKADADTVAKSLDERHYHVAALHGDIPQSQREKILERFRTKRARILVATDV 344 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 AARG+D+E I+ VVNY IP DS +Y HR+GRTGRAG G A+ FV E R + + + Sbjct: 345 AARGIDIEGITHVVNYSIPHDSATYTHRVGRTGRAGSQGIAISFVRPHETRRMEYLSKHC 404 Query: 365 KLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETL 424 + +P E + ++ + + ++ L + ++ E+L + Sbjct: 405 NGELKASTVPLVEHILTQKEGRIFSSLKTHLCQLLSEGVHGTFTRFAQRLLQEDLKAR-V 463 Query: 425 AAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVG 484 A AL A + V A + D R RD P R R Sbjct: 464 AEALGTSADVPQEPNVSLVAALLQIHYGTALDPRQYRDIKTITPE------TARARPHDA 517 Query: 485 DMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVL-- 542 + RIE G+ + + +V I I + + + + +P+ E + Sbjct: 518 EKAYVRIEYGKKSYLTRKRVVQFICALVKIPGHLVDRVDITERCAFARIPRRAAEEAVRL 577 Query: 543 ----QHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERREGGR 598 + R + ++ A P G R + R S ++ G+ Sbjct: 578 SKKRKDLPRVSFVGHASRLR--NTATPAEKSTYPRRLPSGEGLREQISRRTSSSKKASGK 635 >UniRef50_C4XQY7 ATP-dependent RNA helicase n=7 Tax=Deltaproteobacteria RepID=C4XQY7_DESMR Length = 496 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 174/499 (34%), Positives = 256/499 (51%), Gaps = 29/499 (5%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +F L ++ + GYE P+PIQAE +PH++ G D++G+AQTG+GKTAAF LP+L Sbjct: 2 SFDSFCLHDSLIANIKRAGYETPTPIQAEAVPHVMEGHDLMGLAQTGTGKTAAFLLPILH 61 Query: 67 NL---DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 L ++P+ L+LAPTRELA Q+ + DF + R + +YGG Q+RALR Sbjct: 62 RLITNPARTRSPRTLILAPTRELAEQIFRSTLDFMRGTR-LRATVIYGGVGMFPQVRALR 120 Query: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183 QG ++V PGRLLDHL +G + L LVLDEAD M MGF+ D++ I+A +P QT Sbjct: 121 QGVDVIVACPGRLLDHLNQGNVRFDGLETLVLDEADHMFDMGFLPDIKRILAALPAKRQT 180 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAE 243 LFSATMP AI + + +P VRI + + + + V +K L+ L Sbjct: 181 LLFSATMPPAISGLAAETLTDPVTVRIGH-LAPLSTVEHAIYPVSHNQKAPLLLHLLGEA 239 Query: 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 303 ++ I+F RTK+ +A+ L R+G+ + L G+++Q R+ ++ + G IL+ATD Sbjct: 240 GKESVIVFTRTKHRAKNLAQQLCRSGHKATCLQGNLSQRQRQIAMDGFRRGSFQILVATD 299 Query: 304 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 363 +AARG+DV +++ VVN+DIP +E+Y HRIGRTGRA R G+A FV + ++R IE Sbjct: 300 IAARGIDVSQVAHVVNFDIPDTAEAYTHRIGRTGRAERDGQAHTFVTGEDMGMVRAIESH 359 Query: 364 MKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLET 423 MK +P + E E + + +G + Sbjct: 360 MKKPLPRRNVEGFEP-----------------EPGEFRRSAPAPRSAARPRQGYGAPRQG 402 Query: 424 LAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPR----GDREDRPRRE 479 + QG+R P P D PR R R R DRPR E Sbjct: 403 GYGD--RQRQGDRPYGDRPRGPRPEGARADSARDDRPRSDRPRSDRPAADRPRSDRPRTE 460 Query: 480 RRDVGDMQLYRIEVGRDDG 498 R+ + + +G D Sbjct: 461 RQPSDE-RRSTFGLGGADN 478 >UniRef50_Q485D3 ATP-dependent RNA helicase, DEAD box family n=24 Tax=Gammaproteobacteria RepID=Q485D3_COLP3 Length = 455 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 155/431 (35%), Positives = 242/431 (56%), Gaps = 27/431 (6%) Query: 9 ADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNL 68 +GL A +L+A+ GY+ +PIQ E IP + G D+L AQTG+GKTAAFSLP+L + Sbjct: 4 DSIGLSADLLKAVKACGYKNLTPIQQEAIPVIRQGVDLLASAQTGTGKTAAFSLPILDAI 63 Query: 69 ----------------------DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNV 106 +A + L+L PTRELA QVA+ + FS+++ + Sbjct: 64 AKANHAAKSSTTSTDENSAEEKSASGQAIRALILTPTRELANQVADNIKQFSQYLP-IKS 122 Query: 107 VALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGF 166 +YGG + Q + L+QG ++V TPGRLL+HL +DLS++ LVLDEAD ML MGF Sbjct: 123 GVVYGGGKMASQTKMLKQGLDVLVATPGRLLEHLALRNVDLSQVKFLVLDEADRMLDMGF 182 Query: 167 IEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWT 226 + D+E ++ + HQT +FSAT + ++ + + +K P+ + + TT I Q+ + Sbjct: 183 LTDIEKLLLAVKHKHQTLMFSATFSDRVKSLANQLLKSPKTISVSKENTTSGKIKQAVYW 242 Query: 227 VWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQ 286 V RK E L + ++ ++F TK + +A+ L+ +G +A +GD Q R + Sbjct: 243 VTEERKRELLSELIGVNNWQQVLVFAGTKESANTLAKELKLDGIKAALCHGDKTQGARNK 302 Query: 287 TLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRAL 346 LE+ +G++ +L+ATDVAARGLD+ ++ VVN+ +P E YVHR+GRTGRAG++G A+ Sbjct: 303 ALEQFSEGKVRVLVATDVAARGLDIPDLAFVVNFHLPFLPEDYVHRVGRTGRAGKSGTAI 362 Query: 347 LFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRAL 406 V ++ R L NIE+ ++ + P E E A V++ ++YRA Sbjct: 363 SLVSPKDERFLENIEQLIERKFERIVAPGYEFNRLEASEYQEATVKR----DSKNRYRAA 418 Query: 407 LSKIQPTAEGE 417 K Q A+ + Sbjct: 419 QEKNQNLAKKD 429 >UniRef50_B6BTD3 Dead/deah box helicase domain protein n=1 Tax=beta proteobacterium KB13 RepID=B6BTD3_9PROT Length = 444 Score = 538 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 148/374 (39%), Positives = 234/374 (62%), Gaps = 9/374 (2%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +F++ G PI +A++ + Y P+PIQ +CIP +L+G+DVL AQTG+GKTAAF LPLL Sbjct: 2 SFSNFGFIPPIGKAISRINYSTPTPIQEQCIPVVLSGKDVLASAQTGTGKTAAFCLPLLN 61 Query: 67 NLDPELK-------APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119 ++ + K +P +L+L+PTRELA Q+ + + FS H N+V++ GG Y +Q Sbjct: 62 LVEKKPKHKHKRNISPDVLILSPTRELATQIEQELKRFS-HFMDTNIVSVVGGVSYKLQN 120 Query: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179 + L+ +V TPGRL+D +K+ ++L + LV+DEAD ML MGFI D++ I + Sbjct: 121 KLLKSNVNFLVATPGRLMDLVKQRKINLKHIDALVIDEADRMLDMGFIPDIKKIFESTSQ 180 Query: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTV-WGMRKNEALVR 238 Q +F+AT+ + I +I ++F+K+PQ + ++ + +I Q + V +K LV Sbjct: 181 DQQVLMFTATLNKQIEKIAQQFLKDPQRIAVEQENKSNKNIQQIAYPVADYNQKKLVLVD 240 Query: 239 FLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDI 298 L D + AIIF TK +++ L + S L+GDM+Q R +T+ R K+ + I Sbjct: 241 VLNEADLNQAIIFTATKREADRLSDELYLMNHRSKTLHGDMSQRERTRTINRFKNNEIQI 300 Query: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLR 358 L+ATDVAARG+DV+ I+ V+N+D+P E Y+HRIGRTGRA R G+A+ V ++E+ +L+ Sbjct: 301 LVATDVAARGIDVDDITHVINFDLPRQVEDYIHRIGRTGRAERKGKAISLVIDKEKFMLQ 360 Query: 359 NIERTMKLTIPEVE 372 IE+ + I ++ Sbjct: 361 KIEKYANIKIEVIK 374 >UniRef50_Q28T45 DEAD/DEAH box helicase-like protein n=18 Tax=Alphaproteobacteria RepID=Q28T45_JANSC Length = 644 Score = 538 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 171/425 (40%), Positives = 244/425 (57%), Gaps = 13/425 (3%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 TTFADL L + +A+ + GYE P+PIQA IP L GRDVLG+AQTG+GKTA+F+LP++ Sbjct: 11 TTFADLDLNPKVQKAIVEAGYESPTPIQAGAIPPALAGRDVLGIAQTGTGKTASFTLPMI 70 Query: 66 QNL---DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 L + P+ LVL PTRELA QVAE ++KH++ + L GG + Q +A+ Sbjct: 71 TMLARGRARARMPRSLVLCPTRELAAQVAENFDIYAKHVK-LTKALLIGGVSFKEQEQAI 129 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 +G +++ TPGRLLDH +RG L L+ + +V+DEAD ML MGFI D+E I +P Q Sbjct: 130 DKGVDVLIATPGRLLDHFERGKLILNDVKVMVVDEADRMLDMGFIPDIERIFGLVPFTRQ 189 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMR-------KNEA 235 T FSATM I RIT F+ P+++ ++ TT I Q R K + Sbjct: 190 TLFFSATMAPEIERITNTFLSNPEKIEVERQSTTSATIEQRLIEFKAPRRDAQAKMKRDM 249 Query: 236 LVRFLEAED--FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKD 293 L + AE F AIIF K VA++L+++ N+ ++GD++Q+ R +TL +D Sbjct: 250 LRAAITAEGDAFRNAIIFCNRKVDVDIVAKSLKKHNLNAEPIHGDLDQSHRMRTLAGFRD 309 Query: 294 GRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRE 353 G + +L+A+DVAARGLD+ +S V+NYD+P +E YVHRIGRTGRAG+ G A+ + Sbjct: 310 GSITLLVASDVAARGLDIPNVSHVINYDVPSHAEDYVHRIGRTGRAGKTGVAITLCVPSD 369 Query: 354 RRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPT 413 + L IE +K IP E P K E + ++ S+ + + P Sbjct: 370 EKYLGAIEGLIKQPIPRAEAPMDAGTPKAETEDKPRRSRRGGRRSEEPKAEEKQADAAPE 429 Query: 414 AEGEE 418 EE Sbjct: 430 PAREE 434 >UniRef50_Q24I45 DEAD/DEAH box helicase family protein n=2 Tax=Tetrahymena thermophila RepID=Q24I45_TETTH Length = 713 Score = 538 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 150/491 (30%), Positives = 241/491 (49%), Gaps = 26/491 (5%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 ++ D I+ + +EKPSPIQ+ P +L+G D++G+A+TGSGKT +F LP + Sbjct: 102 SWTDTHFPQYIMNEVTHAKFEKPSPIQSLAFPVVLSGHDLIGIAETGSGKTLSFLLPSIV 161 Query: 67 NLDPEL-----KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 +++ + P +LVLAPTRELA+Q+ F K + + +YGG Q Sbjct: 162 HINAQPTVKKGDGPIVLVLAPTRELAMQIERESERFGKSSK-LKCACIYGGADKYSQRAL 220 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 L+QG +V+ TPGRL+D L+ T L +++ LVLDEAD ML MGF + I+ QI Sbjct: 221 LQQGVDVVIATPGRLIDFLESETTTLRRVTYLVLDEADRMLDMGFEIQIRKILGQIRPDR 280 Query: 182 QTALFSATMPEAIRRITRRFMKE-PQEVRIQSSVTT-RPDISQSYWTVWGMRKNEALVRF 239 QT +FSAT P+ ++ + + + K P V+I I Q + +K L++ Sbjct: 281 QTLMFSATWPKNVQNLAQDYCKNTPVYVQIGKHELAINERIKQIVYVTDQSKKINQLIKQ 340 Query: 240 LE-AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDI 298 L+ D +IF +TK ++ L + G+ A++GD Q R+ + + K G I Sbjct: 341 LDCLTQKDKVLIFAQTKKGCESMSRILNKEGFKCLAIHGDKAQKDRDYVMNKFKSGECRI 400 Query: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLR 358 LIATDVA+RGLDV+ +S V NYD P E YVHRIGRTGRAG G A+ F+ + + + Sbjct: 401 LIATDVASRGLDVKDVSHVFNYDFPKVMEDYVHRIGRTGRAGAYGCAVSFLTFEDDKKIS 460 Query: 359 N----IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTA 414 + K IP ++L + + R ++ + + SS D K +A Sbjct: 461 REYVQMLHDAKQEIP-IDLLDLASINPRYRTQY-----KTVSSSYYDI------KKFNSA 508 Query: 415 EGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDRED 474 + + + + + + + + R P +++ R D+ + Sbjct: 509 DTSKPSENQNVSNTANSSDKYTSSSSYNQYKSKKDEDDKRSRSRSP-YKSENNNRWDKYN 567 Query: 475 RPRRERRDVGD 485 R + + Sbjct: 568 RTKSPEYRSSN 578 >UniRef50_A0RP33 Putative ATP-dependent RNA helicase RhlE n=2 Tax=Campylobacter fetus RepID=A0RP33_CAMFF Length = 624 Score = 538 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 162/498 (32%), Positives = 256/498 (51%), Gaps = 11/498 (2%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F+D L + ILEAL +L Y+ P+ IQ IP ++ G+D+L A+TG+GKTAAF+LP+L+ Sbjct: 3 FSDFDLSSAILEALKELNYDAPTQIQQVAIPAIMQGKDILAGARTGTGKTAAFALPILEK 62 Query: 68 LDPELK-----APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 L + + ++LVL PTRELA QV + + ++K + + ++GG Q++AL Sbjct: 63 LSSKERNKKRPQTRVLVLVPTRELANQVTQNIKSYAKKLP-FKTLPVFGGVSSYPQIQAL 121 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 + G IVV TPGRLLD + L L + LV DEAD M MGFI D++ I+ +PE Q Sbjct: 122 KSGIDIVVATPGRLLDLALQNALSLEHIDTLVFDEADRMFDMGFIHDIKQIVKMLPEKRQ 181 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 LFSAT P + + +K+P ++I+ +T +I Q V +K E L Sbjct: 182 NLLFSATYPSEVMSLCNSMLKDPLRIQIEEQNSTALNIIQRVILVDRDKKMELLNEVFGV 241 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 E D A++F RTK + + + L G++ AAL+GD +Q++R +TLE+ K+G+ IL+AT Sbjct: 242 ESIDQALVFTRTKRSADKCSSYLHTLGFSVAALHGDKSQSVRSKTLEKFKNGKTKILVAT 301 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 D+AARGLD++ + V+N ++P E YVHRIGRTGRAG G A+ V E + L +IE+ Sbjct: 302 DIAARGLDIKELPFVINLELPNVPEDYVHRIGRTGRAGNDGVAISLVCVDEFKFLIDIEK 361 Query: 363 TMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLE 422 + + E + + + S D+ + K + D + Sbjct: 362 LIDKKLIRESFSGFEADLRVKPQPIRRGQNMNKSSERDDRNGNKIDKKERKPREFNSDKK 421 Query: 423 TLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRD 482 + + P + K + + +D ++ +R+ + Sbjct: 422 DESKRGRNRDDFKGEFRDRPKKDDKRKFDDKRSKFGFDKDFGTDERETKKDGDFKRKFKK 481 Query: 483 VGDMQLYRIEVGRDDGVE 500 + Y R DGV+ Sbjct: 482 DESKREY-----RRDGVK 494 >UniRef50_P17844 Probable ATP-dependent RNA helicase DDX5 n=52 Tax=Fungi/Metazoa group RepID=DDX5_HUMAN Length = 614 Score = 538 bits (1386), Expect = e-151, Method: Composition-based stats. Identities = 132/368 (35%), Positives = 210/368 (57%), Gaps = 10/368 (2%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 F + A +++ + + +P+ IQA+ P L+G D++G+AQTGSGKT ++ LP + Sbjct: 95 NFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIV 154 Query: 67 NLDPEL-----KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 +++ + P LVLAPTRELA QV + ++ + R + +YGG Q+R Sbjct: 155 HINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACR-LKSTCIYGGAPKGPQIRD 213 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 L +G +I + TPGRL+D L+ G +L + + LVLDEAD ML MGF + I+ QI Sbjct: 214 LERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 273 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQS-SVTTRPDISQSYWTVWGMRKNEALVRFL 240 QT ++SAT P+ +R++ F+K+ + I + ++ +I Q + K+E L+R + Sbjct: 274 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 333 Query: 241 EA---EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLD 297 E E + I+FV TK E+ + R+G+ + ++GD +Q R+ L K G+ Sbjct: 334 EEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAP 393 Query: 298 ILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLL 357 ILIATDVA+RGLDVE + V+NYD P SE Y+HRIGRT R+ + G A F + + Sbjct: 394 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQV 453 Query: 358 RNIERTMK 365 ++ ++ Sbjct: 454 SDLISVLR 461 >UniRef50_Q3SF48 DEAD/DEAH box helicase n=7 Tax=cellular organisms RepID=Q3SF48_THIDA Length = 533 Score = 538 bits (1386), Expect = e-151, Method: Composition-based stats. Identities = 185/484 (38%), Positives = 258/484 (53%), Gaps = 23/484 (4%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +F++LGL IL+++ GYE +P+Q + IP L+G D+L + TGSGKTAAF LP +Q Sbjct: 2 SFSELGLDPLILKSVLAAGYENATPVQQQAIPAALSGGDLLVSSHTGSGKTAAFLLPSIQ 61 Query: 67 NLDPELK----APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 L E P++LVL PTRELA+QV +A + K MR L GG Y +QL+ L Sbjct: 62 RLLAEPAVKSIGPRVLVLTPTRELALQVEKAAMTYGKEMRRFRTACLVGGAPYGLQLKRL 121 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 Q +VV TPGRL+DHL+RG +D S+L LVLDEAD ML MGF++D++ I A+ P Q Sbjct: 122 SQPVDVVVATPGRLIDHLERGKIDFSRLEVLVLDEADRMLDMGFVDDIKAIAARCPAERQ 181 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWG-MRKNEALVRFLE 241 T LFSAT+ + + R ++ Q + I++ I Q KN L L Sbjct: 182 TLLFSATLDGVVGNLARELTRDAQRIEIEAVPHKEAKIEQRLLFADNMDHKNRLLDALLR 241 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 + AI+F TK +T E+++ L +G+ S AL+GDM Q R + L+RL++GR +L+A Sbjct: 242 DVEMVQAIVFASTKRSTEEISDLLAESGFASDALHGDMQQGQRNRALQRLREGRTRVLVA 301 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 TDVAARG+DV IS V+N+D+P +E YVHRIGRTGRAGR G A+ F RE L++NIE Sbjct: 302 TDVAARGIDVASISHVINFDLPRQAEDYVHRIGRTGRAGRTGIAVSFAGMREGGLVKNIE 361 Query: 362 RTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDL 421 R I LP E + + + + R+ + +P Sbjct: 362 RYTGNRIEVHTLPGLEPTQRPSTGRPGNGRPRGNGPRGGYEKRSFGDRSEPR-------- 413 Query: 422 ETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERR 481 + G+R D R R R+D P R D G RG + + Sbjct: 414 ----------SYGDRPRGDSRDNRDRGYRGDARRNDGAPARRFDNGVRGPSDVPRMTSEQ 463 Query: 482 DVGD 485 G Sbjct: 464 TAGP 467 >UniRef50_C6Q9Z2 DEAD/DEAH box helicase domain protein n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6Q9Z2_9RHIZ Length = 657 Score = 538 bits (1386), Expect = e-151, Method: Composition-based stats. Identities = 200/635 (31%), Positives = 281/635 (44%), Gaps = 28/635 (4%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 F G P+ AL GY P+PIQ + +P L GRD+LGMA+TGSGKTA F LPLLQ Sbjct: 27 NFEAFGFAEPLSRALTQCGYVTPTPIQVQALPPQLEGRDLLGMAETGSGKTATFVLPLLQ 86 Query: 67 NL-----DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 + +P K LVLAPTRELA+Q+ + + +++MR + + GG Q+ A Sbjct: 87 KIASQNSEPAPKQVLALVLAPTRELAIQIDQEVASLARNMR-IRRAVVLGGVSKGPQINA 145 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 L++G ++V TPGRLLD + T DLS++ LVLDEAD M MGFI D++ I+A +PE Sbjct: 146 LKRGVHVLVATPGRLLDLINMRTCDLSRVETLVLDEADRMFDMGFIRDIKKIVAMLPEAR 205 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 +TALFSATMP I++ +KEP V + S I Q V K L L Sbjct: 206 RTALFSATMPVEIKKFAYDILKEPYRVDLSSKSVVVDRIDQKVMIVRTTEKQSRLHTILA 265 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 E I+F RTK VAE L G +++A +G+ Q R++ L G + +L+A Sbjct: 266 DEACKRVIVFTRTKRGADRVAERLGMAGISASAFHGNKAQNARQRALNDFMMGHIRVLVA 325 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 TD+AARG+DV I+ VVN+D+P+D E+YVHR+GRT R G +G A+ + ER+ + IE Sbjct: 326 TDIAARGIDVSNITHVVNFDMPLDPETYVHRVGRTARKGNSGIAISLCDPGERQEITAIE 385 Query: 362 RTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDL 421 R MK + + E L + D + A + Sbjct: 386 RMMKQKLEVIADVGGEALPMPERRQHHRAETGPRRDGDRQHHHAGGRRDGREGGQRGERP 445 Query: 422 ETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDD-RGPRDRNDRGPRGDREDRPRRER 480 + A P P D D G +R + G R +R +R Sbjct: 446 ARPHRNGDERANASPARNGENRRPYEPLAIAADGDAVFGVGERRESRGDGHRPNRAPGDR 505 Query: 481 RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGE 540 G+ + + G + G A EG+ + R + P + Sbjct: 506 PHRGERRHHERNGGGEQRAN-----GHPAREGEPAKREQAHRDHGDR------PHRGERQ 554 Query: 541 VLQHFTRTRILN---KPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERREGG 597 +H + Q D QP + G R EGG + ERR Sbjct: 555 HHEHKAGGEARGSGHRSATGQRSRDGQPARHADSSRSQNAHSGHRHEGGH--ASERRNDE 612 Query: 598 RGDGRRFSGERREGRAPRRDDS-----TGRRRFGG 627 ER + R RR GG Sbjct: 613 HRQSPARQSERGDKRPAWSGTQAPKFMKPRRDDGG 647 >UniRef50_Q1ECV0 LOC556764 protein (Fragment) n=21 Tax=Eukaryota RepID=Q1ECV0_DANRE Length = 519 Score = 537 bits (1385), Expect = e-151, Method: Composition-based stats. Identities = 138/369 (37%), Positives = 210/369 (56%), Gaps = 10/369 (2%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 T F +++ L +++P+ IQA+ P L+GRD++G+AQTGSGKT A+ LP + Sbjct: 95 TNFHQAQFPQYVMDVLLQQNFKEPTAIQAQGFPLALSGRDMVGIAQTGSGKTLAYLLPAI 154 Query: 66 QNLDPEL-----KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 +++ + P LVLAPTRELA QV + D+ K R + +YGG Q+R Sbjct: 155 VHINHQPYLERGDGPICLVLAPTRELAQQVQQVAFDYGKSSR-IKSTCVYGGAPKGPQIR 213 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 L +G +I + TPGRL+D L+ G +L + + LVLDEAD ML MGF + I+ QI Sbjct: 214 DLERGVEICIATPGRLIDFLEVGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPD 273 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQS-SVTTRPDISQSYWTVWGMRKNEALVRF 239 QT ++SAT P+ +R++ F+++ ++ I + ++ +I Q K+ L++ Sbjct: 274 RQTLMWSATWPKEVRQLAEDFLQDYVQINIGALELSANHNILQIVDVCMENEKDNKLIQL 333 Query: 240 LEA---EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRL 296 +E E + IIFV TK E+ + R+G+ + ++GD +Q R+ L + G+ Sbjct: 334 MEEIMAEKENKTIIFVETKKRCDELTRRMRRDGWPAMCIHGDKSQPERDWVLTEFRSGKA 393 Query: 297 DILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRL 356 ILIATDVA+RGLDVE + V+NYD P SE YVHRIGRT R+ G A F R Sbjct: 394 PILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLRQ 453 Query: 357 LRNIERTMK 365 R++ R ++ Sbjct: 454 ARDLVRVLE 462 >UniRef50_D1INE6 Whole genome shotgun sequence of line PN40024, scaffold_66.assembly12x (Fragment) n=7 Tax=Eukaryota RepID=D1INE6_VITVI Length = 1180 Score = 537 bits (1384), Expect = e-151, Method: Composition-based stats. Identities = 149/458 (32%), Positives = 229/458 (50%), Gaps = 9/458 (1%) Query: 17 ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQ 76 +L + G+ P+PIQA+ P L RD++ +A+TGSGKT + +P +L PQ Sbjct: 33 LLFQVYSAGFSAPTPIQAQSWPVALQSRDIVAIAKTGSGKTLGYLIPGFIHLKRIRNNPQ 92 Query: 77 ----ILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGT 132 +LVL+PTRELA Q+ + F + R ++ LYGG QLR L +G IVV T Sbjct: 93 MGPTVLVLSPTRELATQIQDEAVKFGRSSR-LSCTCLYGGAPKGPQLRDLDRGADIVVAT 151 Query: 133 PGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPE 192 PGRL D L+ + L ++S LVLDEAD ML MGF + I+ ++P QT +++AT P+ Sbjct: 152 PGRLNDILEMRRVSLRQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPK 211 Query: 193 AIRRITRRFMKEPQEVRIQS--SVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD-AAI 249 +R+I + P +V I + + I+Q + M K++ L + L +++ I Sbjct: 212 EVRKIAADLLVNPVQVNIGNVDELVANKAITQYVEVLPYMEKHKRLEQILRSQEPGSKII 271 Query: 250 IFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGL 309 IF TK ++A L R + +AA++GD +Q R+ L + + GR +L+ATDVAARGL Sbjct: 272 IFCSTKKMCDQLARNLTRP-FGAAAIHGDKSQGERDYVLNQFRTGRSPVLVATDVAARGL 330 Query: 310 DVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIP 369 D++ I +V+NYD P E YVHRIGRTGRAG G A F ++ + ++ + ++ Sbjct: 331 DIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAYTFFAEQDAKYASDLVKVLEGANQ 390 Query: 370 EVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAALL 429 V ++ + + + D + S G +++ Sbjct: 391 RVPPEIRDMASRGGGMGRSRRWGSGTGGRDGGRGGRNDSSYGGRDGGRGGWGMAPSSSSR 450 Query: 430 KMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRG 467 G R R + D D R R DRG Sbjct: 451 LERGGGRGADQDQRDRDRYDHSYHDGHDFDTRSRYDRG 488 >UniRef50_A3ZWP8 ATP-dependent RNA helicase n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZWP8_9PLAN Length = 428 Score = 537 bits (1384), Expect = e-151, Method: Composition-based stats. Identities = 158/383 (41%), Positives = 227/383 (59%), Gaps = 3/383 (0%) Query: 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 + +AD+ L + AL Y +PSPIQA IP L GRDVLG A+TG+GKTAAF +P+ Sbjct: 3 DINYADMALSVEMKAALEAARYIQPSPIQAAIIPLALEGRDVLGQARTGTGKTAAFGIPI 62 Query: 65 LQNLD--PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 ++ L+ P + PQ L+L PTRELAVQV + + + H + +NVVA+YGG+ Q+ L Sbjct: 63 IERLEHGPNSRNPQALILTPTRELAVQVRDEIAKLT-HGQRINVVAVYGGKPLRSQMEKL 121 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 ++ P IVVGTPGR++D + R L L L +VLDEAD ML +GF D+E I+ + PE Q Sbjct: 122 KRAPHIVVGTPGRVIDLMTRRALQLEMLRTVVLDEADRMLDIGFRPDIEKILRRCPEERQ 181 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 T L SAT+P I ++ +R+M+ P++V + + I Q Y+TV +K + LV L+ Sbjct: 182 TLLLSATVPPTIEKLAQRYMRNPEKVDFSPTNISAETIEQRYFTVDHSKKFDMLVELLKR 241 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 E AI+F RTK T + + L + ++GDM Q R + L K + +L+AT Sbjct: 242 EQPQKAIVFCRTKRGTERITQRLSKKTKLVHCIHGDMQQGARNRALSDFKASKFRVLVAT 301 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 DV RG+D+ +S ++NYDIP S+ YVHR+GRTGR G+ G A FV E L IE Sbjct: 302 DVVGRGIDISDVSHIINYDIPEFSDDYVHRVGRTGRMGKEGIAYTFVTPEEGNELTRIEV 361 Query: 363 TMKLTIPEVELPNAELLGKRRLE 385 + + ELP + ++ Sbjct: 362 RIDKLLIRDELPGFAPYERTDVD 384 >UniRef50_C1I2P2 ATP-dependent RNA helicase DeaD n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I2P2_9CLOT Length = 481 Score = 537 bits (1384), Expect = e-151, Method: Composition-based stats. Identities = 166/555 (29%), Positives = 284/555 (51%), Gaps = 79/555 (14%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F ++ L IL+AL +LG+EKPS +Q E IP++L+ +D++ +QTGSGKTA+F +PL + Sbjct: 6 FENMNLSEEILKALKNLGFEKPSEVQQEVIPYILDKKDLVVKSQTGSGKTASFGIPLCEL 65 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 ++ E + L+L PTRELA+QV E +++ + ++ V A++G Q ++ Q+R L+Q Sbjct: 66 VNVEENKVKALILVPTRELAIQVKEDISNIGR-LKKVRCAAIFGKQPFNEQIRELKQRVH 124 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 IV GTPGR++DH++RG LD++ + +++DEAD+ML MGFI+ + ++ ++P+ TALFS Sbjct: 125 IVCGTPGRVIDHIERGNLDINDIDFVIIDEADKMLNMGFIDQITDVLDKLPQSKNTALFS 184 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 AT+P+ I + +M P + I+S V R IS+ Y+ V K + L++ L A ++ Sbjct: 185 ATIPKEIEGLYSNYMNNPTVLNIRSKVFNRDKISEKYFNVDREEKFKYLLKSLYAFTDES 244 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 AIIF TK++ ++ L++ + L+GDM+Q R T+E K+ +L+ATDVAAR Sbjct: 245 AIIFCNTKDSVRNLSSLLKKEKISVKELHGDMDQKDRLATMENFKNKEFKVLVATDVAAR 304 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 G+ + I+ V NY++P++ ESYVHRIGR+GR + G A+ V ER Sbjct: 305 GIHINHITNVFNYEVPIEKESYVHRIGRSGRGDKKGLAISLVSKGER------------- 351 Query: 368 IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAA 427 R L + + +E ++L +Y ++ Sbjct: 352 --------------RFLNEIEEYINYSIEEANLLEYEEIIEG------------------ 379 Query: 428 LLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDMQ 487 R R + D ++ ++ ++ Sbjct: 380 ---------------------------------RKRFFESQKNDYNNKTNVKKNIHNEVT 406 Query: 488 LYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTR 547 I G+ + IVGA +N +++ IG I + HS +++ G +L+ + Sbjct: 407 KIHITAGKKKKIRNIDIVGAFSNLEELTGEDIGIIDVQDGHSFVDILNGKGNLILKRYKE 466 Query: 548 TRILNKPMNMQLLGD 562 R+ K + + Sbjct: 467 IRLKGKVAKLSKAKN 481 >UniRef50_UPI0000E87E35 putative ATP-dependent RNA helicase protein n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87E35 Length = 427 Score = 536 bits (1383), Expect = e-151, Method: Composition-based stats. Identities = 147/400 (36%), Positives = 234/400 (58%), Gaps = 7/400 (1%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +F L A IL+A+ + GY++P+PIQ + IP ++ + VL AQTG+GKTAAF LP+L Sbjct: 2 SFQTFNLDASILKAIQEAGYDQPTPIQTKSIPEIMLNKHVLASAQTGTGKTAAFVLPILD 61 Query: 67 NL---DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 L E + P++L+++PTRELA Q+ +++ +S+++R +N + + GG Y +Q R Sbjct: 62 KLTKNRSEGRGPRVLIVSPTRELATQITDSIKKYSRYLR-INSITITGGISYGLQNRMFS 120 Query: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183 + I+V TPGRLLD ++ ++ L ++LDEAD ML MGF+ D+ I + Q Sbjct: 121 KPIDILVATPGRLLDLYQQKKINFKGLEVMILDEADRMLDMGFVPDIRKIYNATSKKQQM 180 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVW-GMRKNEALVRFLEA 242 +FSAT I++I + F+ P + I+ V+ +I Q + K + L F++ Sbjct: 181 LMFSATFDPPIQKIAQEFLTNPVTISIKPDVSGHKNIKQLIYFADNQSHKQQMLDHFIKN 240 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 ++ AIIF TK ++++ L + ++AL+GDM+Q R +T+ R K IL+AT Sbjct: 241 DEVTQAIIFTATKRMADQLSDQLYHSDIKTSALHGDMSQGSRTKTINRFKRNETKILVAT 300 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 D+A+RG+DV+ IS V NYD+P +E Y+HRIGRTGRA G A+ V +R LR IER Sbjct: 301 DLASRGIDVKNISHVFNYDMPRFAEDYIHRIGRTGRANNKGIAISLVSPTDREFLRKIER 360 Query: 363 TMKLTIPEVELPNAE--LLGKRRLEKFAAKVQQQLESSDL 400 L I +P E +L + + K +K + ++ + Sbjct: 361 FTNLKIEIASIPGMEATILKEAKAPKRKSKGRSFVKKGKV 400 >UniRef50_Q0K893 ATP-dependent RNA helicase n=129 Tax=Proteobacteria RepID=Q0K893_RALEH Length = 646 Score = 536 bits (1383), Expect = e-151, Method: Composition-based stats. Identities = 167/398 (41%), Positives = 226/398 (56%), Gaps = 22/398 (5%) Query: 2 AEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFS 61 E+ FA LGL A IL AL++L Y P+P+QA+ IP L GRD+L +QTGSGKTAAF Sbjct: 54 PAVESGFATLGLDAAILRALSELNYNTPTPVQAQAIPAFLAGRDLLVSSQTGSGKTAAFM 113 Query: 62 LPLLQNLD---------------------PELKAPQILVLAPTRELAVQVAEAMTDFSKH 100 LP +Q + P P +LVL PTRELA+QV EA + ++ Sbjct: 114 LPAIQRISEMPAPQRATEPAKRMKGKRPRPSPAQPALLVLTPTRELALQVTEAAAKYGRN 173 Query: 101 MRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADE 160 +R + ++ GG Y QL AL + P I+V TPGRLLDH+ G +DLS L LV DEAD Sbjct: 174 LRRIVCASILGGMPYPKQLAALAKMPDILVATPGRLLDHIDAGRIDLSALQMLVFDEADR 233 Query: 161 MLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDI 220 ML MGF +D++ I+ P QT +FSAT+ I ++ R +++PQ + I ++ + I Sbjct: 234 MLDMGFADDIDAIVNATPATRQTLMFSATLDARIAQLASRQLRDPQRIEIAAARADQSHI 293 Query: 221 SQSYWTVWGM-RKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDM 279 Q M K L L AI+F TK +AE L G+++ AL+GDM Sbjct: 294 EQRLHFTDDMSHKERLLDHLLRDATLKQAIVFTATKRDADSLAERLSDTGFSAGALHGDM 353 Query: 280 NQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRA 339 Q R +TL L+ G L +L+ATDVAARG+DV I+ VVN+D+P +E YVHRIGRTGRA Sbjct: 354 TQGARNRTLTALRRGNLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRA 413 Query: 340 GRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAE 377 GR+G A+ V + + + IER I + E Sbjct: 414 GRSGTAINLVNHNDMFQWKRIERFTNQRIDASVIEGLE 451 >UniRef50_Q0B215 DEAD/DEAH box helicase domain protein n=8 Tax=Proteobacteria RepID=Q0B215_BURCM Length = 511 Score = 536 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 151/381 (39%), Positives = 221/381 (58%), Gaps = 6/381 (1%) Query: 3 EFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSL 62 +FA LGL P+L L DL Y+ P+P+Q + IP +L G+DV+ AQTG+GKTA F+L Sbjct: 32 NTSMSFASLGLIDPLLRNLQDLNYQTPTPVQVKAIPAVLGGKDVMAGAQTGTGKTAGFAL 91 Query: 63 PLLQNLDPELKAP-----QILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDV 117 PLLQ L + A ++LVL PTRELA QV ++ + K + + +A YGG + Sbjct: 92 PLLQRLVQQGPAVSSNRARVLVLVPTRELAEQVLQSFVAYGKGL-DLRFLAAYGGVSINP 150 Query: 118 QLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQI 177 Q+ LR+G ++V TPGRLLD ++ + ++ LVLDEAD ML +GF ++ + A + Sbjct: 151 QMMKLRKGVDVLVATPGRLLDLNRQNAVQFDQVETLVLDEADRMLDLGFARELNAVFAAL 210 Query: 178 PEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALV 237 P QT LFSAT + IR + ++ P + + T I Q TV K + + Sbjct: 211 PVQRQTLLFSATFTDDIRTMAASILRSPVNISVSPPNVTGSKIKQWVVTVDKRNKPDLFM 270 Query: 238 RFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLD 297 + ++D A++FV+T+N +A L+ GY ++GD Q R + LER K G + Sbjct: 271 HLVAENNWDHALVFVKTRNGVEYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVQ 330 Query: 298 ILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLL 357 +L+ATDVAARGLD++ + LV+N D+P+ ++ YVHRIGRTGRAG +G A+ V E L Sbjct: 331 MLVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQL 390 Query: 358 RNIERTMKLTIPEVELPNAEL 378 IE + T+ E P E Sbjct: 391 AAIEALIGQTLRREEEPGFEA 411 >UniRef50_C6C1F3 DEAD/DEAH box helicase domain protein n=2 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6C1F3_DESAD Length = 493 Score = 536 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 166/478 (34%), Positives = 260/478 (54%), Gaps = 8/478 (1%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +F I+ ++ GYE P+PIQ + IP +L GRDV+G+AQTG+GKTAAF+LP++Q Sbjct: 2 SFKQFSFDRRIMAGIHACGYETPTPIQTKAIPEVLKGRDVMGLAQTGTGKTAAFALPIMQ 61 Query: 67 NLDPELKA----PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 L + + ++LVLAPTRELA+Q+ E + G+ A++GG Q++A Sbjct: 62 RLLEKKFSGQGPIRVLVLAPTRELALQIHENFMELGVEA-GIRSAAVFGGVGAMPQIQAA 120 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 R+ ++V PGRLLD + +G + L K+ LVLDEAD ML MGF+ D+ IM+++P+ Q Sbjct: 121 RRSS-VIVACPGRLLDLMNQGVIKLDKVDTLVLDEADRMLDMGFLPDIRKIMSKLPQRRQ 179 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 LFSATMP+ IR + + + P V++ + + ++ V KN L + LE Sbjct: 180 NLLFSATMPDDIRDLADKILYRPATVQVAN-TAPAKTVEHVFYPVSQHLKNNLLFKVLEQ 238 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 D+D+ ++F RTK+ +A L G+ + L G+M+Q R++ L+ +DG +++AT Sbjct: 239 TDYDSLLVFTRTKHKAKNLARRLAARGHKATFLQGNMSQNQRQRALDGFRDGSFKVMVAT 298 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 D+AARG+D +RI+ VVN D+P +E+Y HRIGRTGRAGR+G A FV + RL+R IE+ Sbjct: 299 DIAARGIDCDRITHVVNLDVPDTAETYTHRIGRTGRAGRSGSAFSFVTRDDLRLMREIEK 358 Query: 363 TMKLTIPEVELPNAE-LLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDL 421 + +I L + + ++ + + + AE + D Sbjct: 359 AVGYSIEHRTLEDFDYDKPNTHPAPAKRGGGRKPAADRKPAGERRPGRGRKPAEARDGDE 418 Query: 422 ETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRE 479 A K + + K RD R R GP+G++ED +R+ Sbjct: 419 SRKPAGERKSGGRRKPGGGRKPSGGPAKSSDERRDSRPSSKRKSGGPKGNQEDSAKRK 476 >UniRef50_B2UL73 DEAD/DEAH box helicase domain protein n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UL73_AKKM8 Length = 423 Score = 536 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 152/373 (40%), Positives = 232/373 (62%), Gaps = 8/373 (2%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 TTF +LGL APIL L +L Y+ P+PIQA CIP LL +D++G+AQTG+GKTAAF+LP Sbjct: 2 VSTTFRELGLSAPILRQLENLEYKTPTPIQAACIPLLLQNKDLMGLAQTGTGKTAAFALP 61 Query: 64 LLQNLD-----PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQ 118 L+Q L P + + L+L+PTRELA Q+ E + +++ + ++ ++GG Y Q Sbjct: 62 LIQQLSERSGKPPGRRVRALILSPTRELAAQIHENIRAYARGLH-LSTAVIFGGVGYASQ 120 Query: 119 LRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP 178 + L G I+V TPGRL+DHL+R T+ L + L+LDEAD ML MGF ++ I+++IP Sbjct: 121 FKELAGGLDILVATPGRLIDHLERRTVSLDGVETLILDEADHMLDMGFAPALKKIVSKIP 180 Query: 179 EGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTV-WGMRKNEALV 237 T +FSATMP+ IR++ + +++P+ VR+ +T + Q V K + Sbjct: 181 RKRHTQMFSATMPDNIRQLAQTLLQKPETVRVSPPSSTADRVEQFLCMVGSQSEKRLLTL 240 Query: 238 RFLEAED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRL 296 L+ ++ +IF RT++ +A L Y ++A++GD +Q RE+ L + G+ Sbjct: 241 ELLKQQELPGRTLIFTRTRHGADRLASFLSGKDYPASAIHGDKSQGRRERMLREFRSGKT 300 Query: 297 DILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRL 356 +L+ATD+AARG+DV+ + LV+NYD+P + E YVHRIGRT RAG AG+A+ E R Sbjct: 301 PVLVATDIAARGIDVKDVRLVINYDLPEEPEVYVHRIGRTARAGAAGQAIALCSPEEIRK 360 Query: 357 LRNIERTMKLTIP 369 RN+ + + +P Sbjct: 361 ARNVHKLLGRLLP 373 >UniRef50_Q5JKF2 DEAD-box ATP-dependent RNA helicase 40 n=11 Tax=Viridiplantae RepID=RH40_ORYSJ Length = 792 Score = 536 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 143/374 (38%), Positives = 211/374 (56%), Gaps = 9/374 (2%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 T+F G IL+ + G+ P+PIQA+ P L +DV+ +A+TGSGKT + LP Sbjct: 150 TSFETGGFPPEILKEIQRAGFSSPTPIQAQSWPIALQCQDVVAIAKTGSGKTLGYLLPGF 209 Query: 66 QNLDPELKAPQ----ILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 ++ P+ +LVLAPTRELA Q+ E F + R ++ LYGG QLR Sbjct: 210 MHIKRLQNNPRSGPTVLVLAPTRELATQILEEAVKFGRSSR-ISSTCLYGGAPKGPQLRD 268 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 L +G +VV TPGRL D L+ + L ++S LVLDEAD ML MGF + I+ +IP Sbjct: 269 LDRGVDVVVATPGRLNDILEMRRISLKQVSYLVLDEADRMLDMGFEPQIRKIVKEIPPRR 328 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQS--SVTTRPDISQSYWTVWGMRKNEALVRF 239 QT +++AT P+ +RRI + P +V I S + I+Q+ + K L + Sbjct: 329 QTLMYTATWPKEVRRIAEDLLVHPVQVTIGSVDELVANSAITQNVELITPSEKLRRLEQI 388 Query: 240 LEAEDFD-AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDI 298 L ++D +IF TK ++A L R + ++A++GD +Q+ RE+ L + GR I Sbjct: 389 LRSQDSGSKVLIFCTTKRMCDQLARTLTRQ-FGASAIHGDKSQSEREKVLSHFRSGRSPI 447 Query: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLR 358 L+ATDVAARGLD++ I +V+NYD P E YVHRIGRTGRAG G A F +++ + Sbjct: 448 LVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVAYTFFCDQDSKYAA 507 Query: 359 NIERTMKLTIPEVE 372 ++ + ++ V Sbjct: 508 DLIKILEGANQRVP 521 >UniRef50_A7HDE9 DEAD/DEAH box helicase domain protein n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HDE9_ANADF Length = 680 Score = 535 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 171/501 (34%), Positives = 278/501 (55%), Gaps = 25/501 (4%) Query: 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 + +F +LGL P+ A+ + GYE+P+P+Q + +G+DV+ ++TG+GKTAAF++P+ Sbjct: 19 QASFDELGLSEPVRRAIAEHGYERPTPVQVSTFRPVRDGKDVIVRSKTGTGKTAAFAIPI 78 Query: 65 LQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 L+ + + P LV+ PTRELA+QVA+ T +KH R ++VVA+YGG QL+ L Sbjct: 79 LERIADGRRRPSALVMCPTRELAIQVAQEFTALAKH-RDLSVVAVYGGASMGEQLQKLEA 137 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 G +I+VGTPGR+ DH++R TL L + LDEADEML MGF E+V I+ +P+ Q Sbjct: 138 GAEIIVGTPGRIYDHIRRRTLKLDETMVCCLDEADEMLNMGFFEEVTRILDNLPKDCQQL 197 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWT-VWGMRKNEALVRFLEAE 243 LFSAT+P I +I R ++ +P+ + + + +I + V K L+ +E E Sbjct: 198 LFSATVPADIEQIIRDYLTDPETILLSGDEYSVENIHNVMYPAVDAYPKPRNLLYMIEME 257 Query: 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 303 + + AI+F T+N T VA L RNGY++ LNGD+ Q RE+ + ++K G + ++ATD Sbjct: 258 EPETAIVFCNTRNDTSLVAAVLNRNGYDAELLNGDLPQKERERVMAKVKRGEVRFMVATD 317 Query: 304 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 363 +AARG+D+ ++ V+NY +P D ++HR+GRTGR G+ G +L V E L +++ Sbjct: 318 IAARGIDISDLTHVINYSLPEDPAVFLHRVGRTGRIGKKGTSLSIVSGAEIHTLTALQKK 377 Query: 364 MKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLET 423 + E +LP + + ++ +++ + +S + + L +++ +GE L Sbjct: 378 FGIAFEEKKLPTPDEARRLWTDRHVVELKDAMSASIFEAFIPLSQELRNRPDGEYL---- 433 Query: 424 LAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGP--------------- 468 +A AL R KRE +R ++G R Sbjct: 434 VAFALKYFFTHHRMERAQDREKAEHKREEHERREKGEVKREGGRRETRGRDRDRERRGDR 493 Query: 469 ----RGDREDRPRRERRDVGD 485 RG+R +RPR E R+ G+ Sbjct: 494 DRAGRGERAERPRAEHRERGE 514 >UniRef50_C4Q0V4 DEAD box ATP-dependent RNA helicase, putative n=1 Tax=Schistosoma mansoni RepID=C4Q0V4_SCHMA Length = 769 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 141/391 (36%), Positives = 221/391 (56%), Gaps = 12/391 (3%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +F +L + IL + G++ P+PIQ++ P L+GRDV+G+AQTGSGKTA+F LP + Sbjct: 93 SFNELNVPDYILSVIAKNGWQLPTPIQSQGWPMALSGRDVVGIAQTGSGKTASFLLPAVI 152 Query: 67 NLDPELK-----APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 ++ + + P L+L PTRELA QV +F+ + + YGG QLR Sbjct: 153 HIMAQPRLLRNEGPICLILVPTRELAQQVLVVAKEFA-DAASLRAMCFYGGSAKGTQLRE 211 Query: 122 LRQGPQIVVGTPGRLLDHLK-RGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 +++G +I + TPGRL+D ++ + L LS+++ LVLDEAD ML MGF + I+ Sbjct: 212 MQKGGEICIATPGRLIDFIRVQRNL-LSRVTYLVLDEADRMLDMGFEPQIRKIIGHTRPD 270 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVT-TRPDISQSYWTVWGMRKNEALVRF 239 QT ++SAT P ++ + R F+ + +V I S P+I+Q + K + L+ Sbjct: 271 RQTLMWSATWPREVQTLAREFLTDYIQVNIGSVSLHANPNITQIVEIMDDWSKEQRLIEL 330 Query: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299 L + ++FV TK T ++ +L R G+ A++G Q RE TL K GR++IL Sbjct: 331 LTSFGRARTLVFVETKRRTDQLTNSLRRRGFYVEAMHGGKQQRDRELTLANFKSGRMNIL 390 Query: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359 +ATDVA+RGLD++ I VVN+D P +E Y+HRIGRT R+ + G A F ++ R R+ Sbjct: 391 VATDVASRGLDIDNIEYVVNFDFPNQTEDYIHRIGRTARSDKTGTAFTFFTHKNVRQARD 450 Query: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAK 390 + + E+ +AEL+ + + K Sbjct: 451 LIDILDEANQEI---SAELVQLAGMSNYLRK 478 >UniRef50_A9KIC2 DEAD/DEAH box helicase domain protein n=5 Tax=Firmicutes RepID=A9KIC2_CLOPH Length = 483 Score = 535 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 152/377 (40%), Positives = 227/377 (60%), Gaps = 1/377 (0%) Query: 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 + F L I++AL+ L Y +P+PIQ + IP L G+D++ ++TGSGKTAAF++P+ Sbjct: 3 DNKFTQYKLCEEIIQALSMLHYIEPTPIQEKVIPLALEGKDIIAKSKTGSGKTAAFAIPI 62 Query: 65 LQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 +++ E PQ LVL PTRELA QV + + + + M+ V V ++GG +D Q L+Q Sbjct: 63 CESIVWEENLPQALVLEPTRELAYQVKDEIFNVGR-MKRVKVPVVFGGFPFDKQALTLKQ 121 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 IVVGTPGR+LDH + GTL S + +++DEAD ML MGF++DV+ I++ +PE Sbjct: 122 KSHIVVGTPGRVLDHCETGTLKCSNVKYVIIDEADLMLDMGFLDDVKRILSYLPENITIM 181 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 LFSATM EA+ +T FM P EV+++ T I Q V K E +R L + Sbjct: 182 LFSATMGEALYALTDEFMNSPVEVKLEDGTETVDSIEQLGCFVTEEDKYELFLRMLYKNN 241 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 A+IF T+ + L++ L+G ++Q R T++ + G LIATDV Sbjct: 242 PTNAMIFCGTREMVEVLYYKLKKEKVWCGMLHGLIDQKQRIHTIDDFRTGGFRYLIATDV 301 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 AARG+D + I+ V+NYD+PM E+YVHRIGRTGR G++G+A+ F+ E+++L IE+ Sbjct: 302 AARGVDFDDITHVINYDLPMSKETYVHRIGRTGRNGKSGKAISFIREEEKKMLSLIEKFT 361 Query: 365 KLTIPEVELPNAELLGK 381 I V P+ E + + Sbjct: 362 GTPIEIVTPPSEEEVRE 378 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 45/131 (34%), Gaps = 2/131 (1%) Query: 424 LAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDV 483 + KM P + P E R+ N+ + + + + Sbjct: 346 IREEEKKMLSLIEKFTGTPIEIVTPPSEEEVREFLYKEKFNEAQQKKQERKKKKGDVFQK 405 Query: 484 GDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSR-YIGNIKLFASHSTIELPKGMPGEVL 542 M+L I GR + +VG I+ ++ + IG I + S + +E+ G VL Sbjct: 406 DIMKL-TISGGRKSKLRTCEVVGTISGIEGVNGKEDIGVIDIRDSITYVEILNGKGNLVL 464 Query: 543 QHFTRTRILNK 553 + + K Sbjct: 465 NELPKRTMKGK 475 >UniRef50_A2QC74 ATP-dependent RNA helicase dbp2 n=35 Tax=Eukaryota RepID=DBP2_ASPNC Length = 565 Score = 535 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 137/382 (35%), Positives = 222/382 (58%), Gaps = 10/382 (2%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 TF + G +L + G+++P+ IQ++ P L+GRDV+G+A+TGSGKT + LP + Sbjct: 138 TFDEAGFPQYVLSEVKAQGFDRPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIV 197 Query: 67 NLDPEL-----KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 +++ + P +L+LAPTRELAVQ+ ++ F K R + +YGG Q+R Sbjct: 198 HINAQPLLAPGDGPIVLILAPTRELAVQIQAEISKFGKSSR-IRNTCVYGGVPKGPQIRD 256 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 L +G ++ + TPGRL+D L+ G +L +++ LVLDEAD ML MGF + I++QI Sbjct: 257 LSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDR 316 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQS-SVTTRPDISQSYWTVWGMRKNEALVRFL 240 QT ++SAT P+ +R++ F+ + +V I S ++ I+Q V K + +++ L Sbjct: 317 QTCMWSATWPKEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHL 376 Query: 241 E---AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLD 297 E + +IF TK E+ L ++G+ + +++GD Q R+ L K G+ Sbjct: 377 EKIMENRANKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGKSP 436 Query: 298 ILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLL 357 I++ATDVA+RG+DV I+ V+NYD P +SE YVHRIGRTGRAG G A+ F + Sbjct: 437 IMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNSKQA 496 Query: 358 RNIERTMKLTIPEVELPNAELL 379 R++ + +++ AE++ Sbjct: 497 RDLVTILTEAKQQIDPRLAEMV 518 >UniRef50_B5ESS9 Dead/deah box heliCase domain/helicase conserved domain/dbpa rna binding domain protein n=9 Tax=Bacteria RepID=B5ESS9_VIBFM Length = 462 Score = 535 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 157/402 (39%), Positives = 232/402 (57%), Gaps = 4/402 (0%) Query: 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 +T+F+ L L +L+ L LGY + +PIQA+ +P +L G+DV+ +TGSGKTAAF L L Sbjct: 3 QTSFSSLDLHPSLLQNLETLGYNEMTPIQAQSLPFMLKGKDVIAQGKTGSGKTAAFGLGL 62 Query: 65 LQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 L NL+ + Q LVL PTRELA QVA+ + ++ + + V+ L GG + Q+ +L Sbjct: 63 LANLNVKRFRVQSLVLCPTRELADQVAKEIRKLARAIHNIKVLTLCGGVPFGPQIGSLEH 122 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 G I+VGTPGR+ +HL++G L+L L+ VLDEAD ML MGF + ++ ++ P Q Sbjct: 123 GAHIIVGTPGRVEEHLRKGYLNLDNLNTFVLDEADRMLEMGFQDAIDAVLDHAPVKRQNL 182 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTV-WGMRKNEALVRFLEAE 243 LFSAT P I+ I R M +P + + I+Q ++ V + EAL L Sbjct: 183 LFSATFPPQIKSIADRIMNDPIMTKAE-ETVENTSINQHFFKVGDFEDRLEALQILLLKH 241 Query: 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 303 ++ +IF TK T EVA+ L ++ AL+GD+ Q R++ L R + IL+ATD Sbjct: 242 QPESTVIFCNTKRVTQEVADELRHYDFSVTALHGDLEQRDRDKALVRFANKSTSILVATD 301 Query: 304 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 363 VAARGLD+E + VVN+++ D E +VHRIGRTGRAG G AL +E + IE Sbjct: 302 VAARGLDIESLDAVVNFELSRDPEVHVHRIGRTGRAGNKGIALSLFNEKEMHNIAQIEEY 361 Query: 364 MKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRA 405 M + I + LP+A+ L + +A V ++ ++ R Sbjct: 362 MNIDIRDEALPSADYLKEP--AYYAEMVTLWIDGGKKNKLRP 401 Score = 66.2 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 13/85 (15%), Positives = 35/85 (41%) Query: 478 RERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM 537 +E +M I+ G+ + + I+GA+ + I + +G I +F H+ + + + Sbjct: 378 KEPAYYAEMVTLWIDGGKKNKLRPGDILGALTGKDGIEGKMVGKINVFDFHAYVAVHNTV 437 Query: 538 PGEVLQHFTRTRILNKPMNMQLLGD 562 L+ ++ + + + Sbjct: 438 AKAALKKLESGKMKGRSFRVSRMRG 462 >UniRef50_A5VCX7 DEAD/DEAH box helicase domain protein n=4 Tax=Alphaproteobacteria RepID=A5VCX7_SPHWW Length = 593 Score = 534 bits (1377), Expect = e-150, Method: Composition-based stats. Identities = 189/609 (31%), Positives = 293/609 (48%), Gaps = 37/609 (6%) Query: 13 LKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLD--- 69 L P+ EA+ + GY P+P+QA+ I + RD+L AQTGSGKT A+ L + + L Sbjct: 6 LPRPVAEAITERGYTAPTPVQAQVIAAEAHDRDLLVSAQTGSGKTVAYGLAIAETLLQGA 65 Query: 70 ---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 P P L++APTRELA+QV + + G VV+ GG V+ R L G Sbjct: 66 EALPRAGEPLALIIAPTRELALQVQRELQWLYAKL-GARVVSCVGGMNVRVEQRQLSYGC 124 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 IVVGTPGRL DHL+RG L L ++LDEADEML +GF ED+E I+ P +T LF Sbjct: 125 HIVVGTPGRLKDHLERGALQPGSLRAVILDEADEMLDLGFREDLEEILDLTPPERRTLLF 184 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SATMP+ I + +R+ ++ ++ S + DI V A+V L + Sbjct: 185 SATMPKPIALLAKRYQRDALRIQTTSERESHADIDYRAMAVAPADIQNAVVNVLRFHEAK 244 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 A++F T+ ++ L G+++ L+G+++Q R L+ L+D R + +ATDVAA Sbjct: 245 GAMVFCATRENVRRLSATLTERGFSAVTLSGELSQNERNHALQALRDRRARVCVATDVAA 304 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RG+D+ + LV++ ++P+D E+ HR GRTGRAGR G +L + RR + R + Sbjct: 305 RGIDLPGLELVIHAELPIDPETLQHRSGRTGRAGRKGTCVLITPYQRRRHAERLLRGANV 364 Query: 367 TIPEVELPNAELLGKRRLEKFAAKVQ-QQLESSDLDQYRALLSKIQPTAEGEELDLETLA 425 ++P + + R E+ + ++ DLD R LL E E +A Sbjct: 365 NATWDKVPTPDEIYARDQERLLESLSVGEISDEDLDVARKLL---------ETRSAEEIA 415 Query: 426 AALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGD 485 AA ++ + D D P R DR ++ R + R D Sbjct: 416 AAFVRTQRQSLPAP-------------EDLIDASPIARGDR----EQATREQGPRPGFED 458 Query: 486 MQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHF 545 +R+ VGR + R ++ + G I+ R +G I++F + + E+P+ + G+ Sbjct: 459 TVWFRMNVGRGANADPRWLLPLLCRRGHITKREVGAIRIFQTETRFEIPRAIAGKFTDAL 518 Query: 546 TRTRILNKPMNMQLLGDA---QPHTGGERRGGGRGFGGERREGGRNFSGERREGGRGDGR 602 RT + ++ GDA P +RRG G R G G G + Sbjct: 519 KRTAGEEDGVVIEPAGDAPTPPPAQLRDRRGPPPGGPRGPRAPGGPGGFGGAPRGHGGPK 578 Query: 603 RFSGERREG 611 R+ + +G Sbjct: 579 RYGAKPFKG 587 >UniRef50_A3EUK2 Putative ATP-dependent helicase n=2 Tax=Leptospirillum sp. Group II RepID=A3EUK2_9BACT Length = 444 Score = 534 bits (1377), Expect = e-150, Method: Composition-based stats. Identities = 168/372 (45%), Positives = 234/372 (62%), Gaps = 7/372 (1%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 TF LGL IL ALNDLG+ P+PIQ + IPH+++GRD+LG+AQTG+GKT F LP+L Sbjct: 2 TFEALGLSPEILRALNDLGHASPTPIQKQSIPHVIDGRDLLGIAQTGTGKTGGFLLPVLH 61 Query: 67 NLDPELK---APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 + + + LVL+PTRELA Q+ +A D++K++ N V L GG + Q R L+ Sbjct: 62 KIAEGRRHGIRNRALVLSPTRELATQIHQAAKDYAKYLH-TNAVLLVGGVDFIRQERNLK 120 Query: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183 + IVV TPGRLLDH++R L L+ S +++DEAD ML MGF+ D+ TI+ Q+P+G Q+ Sbjct: 121 RNWDIVVATPGRLLDHVRRNNLTLANTSLVIIDEADRMLDMGFLPDINTIVRQLPKGRQS 180 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWG-MRKNEALVRFLEA 242 LFSAT P I+ + F + VR++ I Q + TV +K L + L+ Sbjct: 181 LLFSATCPPRIQELAATFQNDAVIVRVEPERKGSDHIHQEWITVSHGSQKLGLLKKVLDE 240 Query: 243 --EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 + IIF RTK + +++ AL GY S AL+GD +Q +R + L R + G L +L+ Sbjct: 241 GKSETGQVIIFTRTKRSAEDLSIALNDAGYPSDALHGDKSQPVRNRVLSRFRRGDLKVLV 300 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATDVAARGLD++ I+ V+NYD+P +E YVHRIGRTGRAGR GRAL F +R ++R+I Sbjct: 301 ATDVAARGLDIDGITHVINYDLPQTAEDYVHRIGRTGRAGRTGRALSFFHPADRDIVRSI 360 Query: 361 ERTMKLTIPEVE 372 E IP Sbjct: 361 ETMAGKPIPHSP 372 >UniRef50_C6HUU6 Putative ATP-dependent helicase n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HUU6_9BACT Length = 472 Score = 534 bits (1376), Expect = e-150, Method: Composition-based stats. Identities = 160/365 (43%), Positives = 227/365 (62%), Gaps = 7/365 (1%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +F LGL +L AL+DL +E P+PIQ + IP ++ GRDVLG+AQTGSGKT F LP L Sbjct: 2 SFETLGLNPDLLRALSDLKHESPTPIQKQTIPPIIEGRDVLGVAQTGSGKTGGFLLPSLH 61 Query: 67 N---LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 QILVL+PTRELA Q+ + ++ K++R V L GG Q+ LR Sbjct: 62 RNKRAQGNRTRHQILVLSPTRELAGQIERSAREYGKYLRS-RTVLLVGGTDMRRQIDFLR 120 Query: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183 + +V+ TPGRL+DH++RGT++LS + +VLDEAD ML MGF+ DVETI+ + QT Sbjct: 121 RPWDLVIATPGRLIDHMQRGTINLSHVHTVVLDEADRMLDMGFLPDVETILKALHPERQT 180 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWG-MRKNEALVRFLEA 242 LF+AT+P I+ +T+ + K+P +R++++ I Q + +K L L Sbjct: 181 LLFTATLPARIQMLTKTYQKDPVLIRLETASAPPVSIDQEVVAISHGAQKWGLLKTILTE 240 Query: 243 EDF--DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 +IF RTK ++A L G+ S AL+GD +Q+ R + L + + G+ IL+ Sbjct: 241 PQTTEGQTLIFTRTKRGAEDLANQLLAEGFPSDALHGDKSQSQRNRVLSKFRAGQTRILV 300 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATDVAARGLD++ ++ V+NYD+P E YVHRIGRTGRAGR+GRA+ F +R LLR+I Sbjct: 301 ATDVAARGLDIDTVTCVINYDLPQSPEDYVHRIGRTGRAGRSGRAISFCHPADRNLLRDI 360 Query: 361 ERTMK 365 ER + Sbjct: 361 ERLLG 365 >UniRef50_B7EQA6 cDNA clone:J023079L21, full insert sequence n=5 Tax=Magnoliophyta RepID=B7EQA6_ORYSJ Length = 759 Score = 533 bits (1375), Expect = e-150, Method: Composition-based stats. Identities = 141/360 (39%), Positives = 207/360 (57%), Gaps = 9/360 (2%) Query: 13 LKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP---LLQNLD 69 K+ I + G+ P+PIQA+ P L RD++ +A+TGSGKT + +P LL+ L Sbjct: 238 FKSTIYVKVQQAGFSAPTPIQAQSWPIALRNRDIVAVAKTGSGKTLGYLIPGFILLKRLQ 297 Query: 70 PELK-APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQI 128 + P +LVL+PTRELA Q+ + F + R ++ V LYGG QLR L +G I Sbjct: 298 HNSRDGPTVLVLSPTRELATQIQDEAKKFGRSSR-ISSVCLYGGAPKGPQLRDLERGADI 356 Query: 129 VVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSA 188 VV TPGRL D L+ + L ++S LVLDEAD ML MGF + I+ Q+ QT +F+A Sbjct: 357 VVATPGRLNDILEMRRVSLHQVSYLVLDEADRMLDMGFEPQIRKIVKQVQPKRQTLMFTA 416 Query: 189 TMPEAIRRITRRFMKEPQEVRIQS--SVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 T P+ +R+I + P +V I + + I+Q + K+ L + L +++ Sbjct: 417 TWPKEVRKIASDLLSNPVQVNIGNTDQLVANKSITQYVDVITPPEKSRRLDQILRSQEPG 476 Query: 247 -AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 IIF TK ++A L R Y ++A++GD +QA R+ L + GR IL+ATDVA Sbjct: 477 SKIIIFCSTKRMCDQLARNLARQ-YGASAIHGDKSQAERDSVLSEFRSGRCPILVATDVA 535 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARGLD++ I +VVNYD P E YVHRIGRTGRAG G A F +++ + ++ + ++ Sbjct: 536 ARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFCDQDSKYASDLVKILE 595 >UniRef50_Q5N7W4 DEAD-box ATP-dependent RNA helicase 30 n=3 Tax=Oryza sativa Japonica Group RepID=RH30_ORYSJ Length = 666 Score = 533 bits (1375), Expect = e-150, Method: Composition-based stats. Identities = 143/382 (37%), Positives = 213/382 (55%), Gaps = 9/382 (2%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F + ++A+ G+ +P+PIQ++ P L GRD++G+AQTGSGKT ++ LP L + Sbjct: 253 FQEANFPDYCMQAIAKSGFVEPTPIQSQGWPMALKGRDMIGIAQTGSGKTLSYLLPGLVH 312 Query: 68 LDPELK-----APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 + + + P +L+LAPTRELAVQ+ + F + R +YGG Q+R L Sbjct: 313 VGAQPRLEQGDGPIVLILAPTRELAVQIQQESGKFGSYSR-TRSTCIYGGAPKGPQIRDL 371 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 R+G +IV+ TPGRL+D L+ G +L +++ LVLDEAD ML MGF + I+AQI Q Sbjct: 372 RRGVEIVIATPGRLIDMLEGGHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVAQIRPDRQ 431 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQ-SSVTTRPDISQSYWTVWGMRKNEALVRFL- 240 T +SAT P + + R+F++ P +V I + I Q + K L + L Sbjct: 432 TLYWSATWPREVESLARQFLQNPYKVIIGSPDLKANHSIQQIIEVISEHEKYPRLSKLLS 491 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 + D +IF +TK +V L +G+ + +++GD QA R+ L K G+ I+ Sbjct: 492 DLMDGSRILIFFQTKKDCDKVTRQLRMDGWPALSIHGDKAQAERDYVLAEFKSGKSPIMA 551 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATDVAARGLDV+ I V+N+D P E Y+HRIGRTGRAG +G A F + RN+ Sbjct: 552 ATDVAARGLDVKDIKCVINFDFPTTLEDYIHRIGRTGRAGASGTAFTFFTLSNAKFSRNL 611 Query: 361 ERTMKLTIPEVELPNAELLGKR 382 + ++ V P E + K Sbjct: 612 VKILREAGQVVN-PALESMAKS 632 >UniRef50_Q2BDP3 ATP-dependent RNA helicase n=2 Tax=Bacillus RepID=Q2BDP3_9BACI Length = 543 Score = 533 bits (1375), Expect = e-150, Method: Composition-based stats. Identities = 178/485 (36%), Positives = 272/485 (56%), Gaps = 10/485 (2%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 F LG+ P++ L G ++P+ +Q + IP +L GRD++ AQTG+GKT AF LP+L+ Sbjct: 23 NFKHLGISDPLIHKLAAQGIDEPTAVQEKAIPIVLEGRDIIAQAQTGTGKTLAFILPILE 82 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 +DP + Q L++ PTRELA+Q+ + + M +NV+A+YGGQ + QL L++ Sbjct: 83 KIDPSNGSTQALIVTPTRELALQITSEVKKLIEDMPDLNVLAVYGGQDVEKQLHKLQRQT 142 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 QIVV TPGRLLDHL+RGT+ L ++S LVLDEAD+ML +GF+ ++E I++Q P QT LF Sbjct: 143 QIVVATPGRLLDHLRRGTVQLDEVSFLVLDEADQMLHIGFLNEMELIISQTPASRQTMLF 202 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SATMP+ IR+++++ +KEP+ +RI+ + I Q K AL+ + + Sbjct: 203 SATMPDDIRKLSKKHLKEPESIRIEKTFVPEKAIEQLAIFTTDRAKQNALISRIREDRPF 262 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 AIIF RT ++ +AL+ ++ L+GD+ QA RE+ +++ ++ + LIATDVAA Sbjct: 263 LAIIFCRTIRRATKLYDALKSQRFSCEELHGDLTQAKREKVMKKFRNAEIQFLIATDVAA 322 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RGLDVE ++ V NYDIP DSESYVHRIGRTGRAG+ G A+ F ++ L+ IE+ + + Sbjct: 323 RGLDVEGVTHVYNYDIPQDSESYVHRIGRTGRAGKDGLAVTFYAEKDEAALKAIEQELNI 382 Query: 367 TIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAA 426 +P+ E A EK ++ + + S + S+ + E + + Sbjct: 383 RLPKEE-STATANTTADGEKSSSGDKPKNRSDRDRRAGGAESRRRTGGRTEGRGSREVRS 441 Query: 427 ALLKMAQGERTLIVPPDAPMRP---------KREFRDRDDRGPRDRNDRGPRGDREDRPR 477 + + D +R R DR R+ G +R RP Sbjct: 442 TRSGERRNRSSEGRRADGEIRSYTHDERRENGRRSGDRRSLSDGRRSSGGRSAERNPRPN 501 Query: 478 RERRD 482 R Sbjct: 502 GIRSS 506 >UniRef50_Q1D015 ATP-dependent helicase, DEAD/DEAH-box family n=6 Tax=Cystobacterineae RepID=Q1D015_MYXXD Length = 808 Score = 533 bits (1374), Expect = e-150, Method: Composition-based stats. Identities = 171/610 (28%), Positives = 285/610 (46%), Gaps = 40/610 (6%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F D+ L PI AL + GY P+P+QA + G+D++ ++TG+GKTAAF LPLL+ Sbjct: 31 FDDMNLSEPIRLALAERGYTNPTPVQARAFRPAIEGKDLIVRSKTGTGKTAAFGLPLLEK 90 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 + + + + L+L PTRELA+QVA+ + +KH +G+ + A+YGG Q AL +G Sbjct: 91 IPADERRVRALILCPTRELALQVADELKMLAKH-KGLKIAAIYGGASMKQQEDALEEGTP 149 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 I+VGTPGR+ DH+ RG L L VLDEADEML GF E+V I+ ++P+ Q LFS Sbjct: 150 IIVGTPGRVFDHINRGNLKLDACDHAVLDEADEMLNQGFYEEVTRILDRLPKTRQVLLFS 209 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTV-WGMRKNEALVRFLEAEDFD 246 AT+P I+ + R+ + + + V T I + V K L+ LE E+ Sbjct: 210 ATVPTDIQNLIARYTTNAETLLLSGDVFTVEHIHHIRYDVSDAFPKPRNLIYVLEKEEPQ 269 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 AIIF T++ T V L RNG+++ LNGD+ Q RE+ + ++K G + ++ATD+AA Sbjct: 270 NAIIFCNTRDDTALVTAVLNRNGFDAELLNGDLPQKERERVMGKVKRGEVAFMVATDIAA 329 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RG+D+ + V+NY +P D Y+HR+GRTGR G G A+ RE ++E+ + Sbjct: 330 RGIDISGLEYVINYSLPEDPAVYLHRVGRTGRIGNKGTAINLFSGRELATYTSLEKKYGI 389 Query: 367 TIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAA 426 + E+P E + E+ ++Q+ S + + L ++++P A+ ++L L Sbjct: 390 KFDKREMPAPEEAMRLWTERHVREIQEAAGGSVFEGFLPLAAQLKPRADADDLIAFLLKY 449 Query: 427 ALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGD--------------- 471 + + + + P+ + + G R+R +R RG+ Sbjct: 450 FFSHLRMEKAAAAMAAEGREPPQERKFESREGGRRERGERKERGERRDRERDDRREKRGE 509 Query: 472 ---------------------REDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIAN 510 R + +G DG+ I A+ + Sbjct: 510 SSERERERRPRRDDARRERGAESGRGAAALEAGPGEAKLWVNLGTADGLGPGSIATALED 569 Query: 511 EGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGE 570 G + + +L + + + + + + + K + ++ Sbjct: 570 AGAPVGKVV-RAELRPTFAYVFVAEEDA-AAFETINGKQHGAKTLRVEKSKPRTERDATP 627 Query: 571 RRGGGRGFGG 580 R G Sbjct: 628 RPPPSPDAGP 637 >UniRef50_A1B2U6 DEAD/DEAH box helicase domain protein n=23 Tax=Rhodobacterales RepID=A1B2U6_PARDP Length = 479 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 157/388 (40%), Positives = 229/388 (59%), Gaps = 6/388 (1%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 + E +T F +G+ A + L LG E PSPIQ + IP ++ GRD+LG+AQTG+GKTAAF Sbjct: 62 IPEIDTAFTRMGIDARVAINLPGLGIETPSPIQEKSIPGIVAGRDLLGLAQTGTGKTAAF 121 Query: 61 SLPLLQNL-----DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRY 115 LP+L L PE + + L+LAPTRELA Q+AE + +++ + + GG Sbjct: 122 GLPMLTRLLNIGRKPEPRTCRALILAPTRELATQIAENIDNYAIGTP-IRQFRVVGGASI 180 Query: 116 DVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMA 175 +VQ++ L +G +++ TPGRL+D ++RG +DLS+ LVLDEAD+ML +GFI + I Sbjct: 181 NVQVQRLERGVDVLIATPGRLIDLIERGAIDLSQTRYLVLDEADQMLDIGFIHALRRIAK 240 Query: 176 QIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA 235 +P QT LFSATMP+ + + ++ +P V + I Q V K Sbjct: 241 MLPRERQTLLFSATMPKLMEELADSYLNDPLRVAVNPPGQAAEKIDQGVHFVNQGDKATL 300 Query: 236 LVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGR 295 L +L + AI+F RTK+ + ++ + L++ G+ AA++G+ +Q RE+ L + G Sbjct: 301 LAEYLSKHVDELAIVFGRTKHGSEKLCKLLDKWGFKVAAIHGNKSQGQRERALASFRAGE 360 Query: 296 LDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERR 355 +L+ATDVAARGLD+ +++ V NYD+P E+YVHRIGRT RAGR GRA+ F E Sbjct: 361 TKVLVATDVAARGLDIPQVAHVYNYDLPNVPENYVHRIGRTARAGRDGRAIAFCSPTEIG 420 Query: 356 LLRNIERTMKLTIPEVELPNAELLGKRR 383 LR IE+ MK I V K R Sbjct: 421 ELRAIEKAMKAKIAVVGGEEPFEAAKIR 448 >UniRef50_Q88NB7 ATP-dependent RNA helicase rhlB n=50 Tax=Gammaproteobacteria RepID=RHLB_PSEPK Length = 398 Score = 532 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 149/388 (38%), Positives = 227/388 (58%), Gaps = 12/388 (3%) Query: 3 EFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSL 62 E +T F D L ++ A++DLG+ +PIQA+ + + L G+D +G AQTG+GKTAAF + Sbjct: 6 EGKTRFHDFKLSNELMHAIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLI 65 Query: 63 PLLQNLD----PELK---APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRY 115 ++ L P+ + P+ L++APTREL VQ+A+ +K+ G+NV++ GG + Sbjct: 66 SIISQLQQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYT-GLNVMSFVGGMDF 124 Query: 116 DVQLRALR-QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIM 174 D QL+AL + I+V TPGRLLD +RG + L + +VLDEAD ML MGFI V I+ Sbjct: 125 DKQLKALEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQII 184 Query: 175 AQIPE--GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRK 232 Q P QT LFSAT + + + +++ P V I+ + Q + V G K Sbjct: 185 RQTPPKSERQTLLFSATFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAGSDK 244 Query: 233 NEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLK 292 + L + ++ ++F K+ + E L R+G N+A L+GD+ Q R +TLE + Sbjct: 245 YKLLYNLVTQNKWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFR 304 Query: 293 DGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENR 352 +GR+ +L+ATDVA RG+ ++ IS V+N+ +P D + YVHRIGRTGRAG +G ++ F Sbjct: 305 EGRITVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGVSISFAGED 364 Query: 353 ERRLLRNIERTMKLTIPEVELPNAELLG 380 + L IE + I + E+P ELL Sbjct: 365 DSYQLPAIEALLGRKI-KCEMPPDELLK 391 >UniRef50_B1ZWV2 DEAD/DEAH box helicase domain protein n=9 Tax=Verrucomicrobia RepID=B1ZWV2_OPITP Length = 409 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 150/367 (40%), Positives = 219/367 (59%), Gaps = 2/367 (0%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F L L AP+L + GY P+PIQ IP +L G D++G AQTG+GKTAAF+LP+L Sbjct: 3 FKALQLSAPVLRGVVAAGYTDPTPIQLRAIPVVLGGGDLIGSAQTGTGKTAAFALPILTR 62 Query: 68 LDPEL-KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 L +AP++LVL PTRELA QV A DF++ + VA++GG Y +Q L++G Sbjct: 63 LGAHAARAPRVLVLEPTRELAAQVETAFRDFARFT-DLRTVAVFGGVGYGLQRTELKRGV 121 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 ++V TPGRL+D+L T++L + LVLDE D ML MGF+ V+ I+ + P QT F Sbjct: 122 DVIVATPGRLMDYLHDRTINLQGVEILVLDEVDRMLDMGFLPVVKDIIQRCPRQRQTLFF 181 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SAT+P I+ + ++ P V + + + + + + V +K E L L DFD Sbjct: 182 SATVPPEIQAVASFALRNPTRVEVGVNRSVNESVKHALYPVAADQKFELLEALLARTDFD 241 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 + ++F RTK+ ++A L+ ++ A L+ + +Q R + L K G+ +I++ATD+AA Sbjct: 242 SVLVFSRTKHGADKIARKLKAANHSVAVLHANRSQNQRIEALAGFKSGKYEIMVATDIAA 301 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RG+DV +S V+NYD+P E YVHRIGRTGRA G A V +R+IER + Sbjct: 302 RGIDVAGVSHVINYDVPEKPEDYVHRIGRTGRAQAVGDAFTLVTPENAHDVRDIERFIGQ 361 Query: 367 TIPEVEL 373 IPE+ L Sbjct: 362 KIPELRL 368 >UniRef50_Q58083 Probable ATP-dependent RNA helicase MJ0669 n=29 Tax=cellular organisms RepID=H669_METJA Length = 367 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 153/367 (41%), Positives = 235/367 (64%), Gaps = 9/367 (2%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNG-RDVLGMAQTGSGKTAAFSLPLL 65 F +L L IL A+ + G+EKP+ IQ + IP LN +++ A+TGSGKTA+F++PL+ Sbjct: 7 NFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLI 66 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 + ++ E + ++L PTRELA+QVA+ + K + + + +YGG+ Q++AL+ Sbjct: 67 ELVN-ENNGIEAIILTPTRELAIQVADEIESL-KGNKNLKIAKIYGGKAIYPQIKALK-N 123 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 IVVGTPGR+LDH+ RGTL+L + +LDEADEML MGFI+DVE I+ + + L Sbjct: 124 ANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILL 183 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSATMP I + +++M + + +I QSY V + EAL R L+ ++F Sbjct: 184 FSATMPREILNLAKKYMGDYSFI----KAKINANIEQSYVEVNENERFEALCRLLKNKEF 239 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 ++F +TK T E+A L G+ + A++GD++Q+ RE+ + K ++ ILIATDV Sbjct: 240 -YGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVM 298 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 +RG+DV ++ V+NY +P + ESY+HRIGRTGRAG+ G+A+ + RE + LR IER MK Sbjct: 299 SRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMK 358 Query: 366 LTIPEVE 372 L I +++ Sbjct: 359 LKIKKLK 365 >UniRef50_D1H3Q8 Whole genome shotgun sequence of line PN40024, scaffold_4.assembly12x (Fragment) n=14 Tax=Viridiplantae RepID=D1H3Q8_VITVI Length = 568 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 151/372 (40%), Positives = 216/372 (58%), Gaps = 14/372 (3%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +F D+GL I++ + Y +P+ IQA+ +P L+GRD+LG A+TGSGKTAAF++P++Q Sbjct: 124 SFTDMGLHQSIMKDITFHEYTRPTFIQAQAMPVALSGRDLLGCAETGSGKTAAFAIPMIQ 183 Query: 67 NLDPEL-----KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 + + P LVLAPTRELA Q+ + + FS+ + + GG Q Sbjct: 184 HCLAQPPVRRGDGPLALVLAPTRELAQQIEKEVKAFSRSLDSFRTAIVVGGTNISEQRSE 243 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 LR G IVV TPGR + HL+ G LS++S +VLDEAD ML MGF + +M +P+ H Sbjct: 244 LRAGVNIVVATPGRFIHHLQEGNTSLSRISFVVLDEADRMLDMGFEPQIREVMQNLPQKH 303 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 QT LFSATMP I + + ++ P +V++ ++SQ V K + L+ L Sbjct: 304 QTLLFSATMPMEIETLAQEYLNNPVQVKVGKVSCPTANVSQILEKVSESEKIDGLLALLV 363 Query: 242 AE---------DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLK 292 E F I+FV K EVAEAL G + AL+G +QA RE L + Sbjct: 364 EEASQAERCGRPFPLTIVFVERKTRCDEVAEALVAQGLRAVALHGGRSQAEREAALRDFR 423 Query: 293 DGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENR 352 +G +IL+ATDVA+RGLDV ++ V+N D+P E+YVHRIGRTGRAG G+A F +R Sbjct: 424 NGATNILVATDVASRGLDVTGVAHVINLDLPKAMENYVHRIGRTGRAGSTGQATSFYTDR 483 Query: 353 ERRLLRNIERTM 364 + L+ +I + + Sbjct: 484 DVFLVAHIRKAI 495 >UniRef50_C7LND0 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LND0_DESBD Length = 545 Score = 531 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 169/483 (34%), Positives = 250/483 (51%), Gaps = 9/483 (1%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +F LGL+ +L+A+ + GYE P+ IQA+ IP +L GRD+L AQTG+GKT AF LP++Q Sbjct: 2 SFDQLGLRVELLKAIKNKGYEAPTAIQAQAIPVILAGRDILARAQTGTGKTDAFGLPIVQ 61 Query: 67 NL---DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 L P+ L+L PTRELA+QV E++ +++ + + +GG R + Q+ L Sbjct: 62 ILGLTRGNGHHPRALILTPTRELALQVGESIKAYARKV-SLRCTVAFGGVRIEPQIARLE 120 Query: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183 +G I+V TPGRLLD + L L+ + LV DEAD ML +GF ++ I+ +P +T Sbjct: 121 RGIDILVATPGRLLDLASQEHLSLASIEFLVFDEADRMLDLGFSGEINAILDLLPTVRRT 180 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAE 243 LFSAT I+ + + + +P+ + I + Q V K L+ +E + Sbjct: 181 MLFSATYTPQIKALAAKMLDKPEYIEITPDTAAAEAVQQKVHHVNKDNKLPLLLHLIEKQ 240 Query: 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 303 D ++F RT+ + + L +G + AAL+G +Q+LR++TLE KDG++ IL+ATD Sbjct: 241 KQDRILVFARTRTWANRLTDKLAAHGISVAALHGSKSQSLRKRTLEEFKDGKIHILVATD 300 Query: 304 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 363 VAARGLD+ + LVVNYDIP E YVHRIGRTGRAG +G A+ V ER LL IE Sbjct: 301 VAARGLDISNLPLVVNYDIPNSPEDYVHRIGRTGRAGVSGIAVSLVSPEERNLLLAIEDL 360 Query: 364 MKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQP---TAEGEELD 420 ++ IP + + E + + L++K P T +G Sbjct: 361 LRHQIPVEAVKGFTEDSDVPDFVLYRPGNPKSERNAPRAIKELVAKKSPAKLTVQGRGKK 420 Query: 421 LETLAAALLKMAQGERTLIVP--PDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRR 478 + D RP + R R P R+ + D + R RR Sbjct: 421 PKDAGPESTTRGNKNEKSDARKAEDKDTRPDSKPRGRSTGKPDARSGKDSGPDAKGRGRR 480 Query: 479 ERR 481 R Sbjct: 481 NER 483 >UniRef50_Q0C4R1 ATP-dependent RNA helicase, DEAD/DEAH box family n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0C4R1_HYPNA Length = 708 Score = 531 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 194/651 (29%), Positives = 296/651 (45%), Gaps = 38/651 (5%) Query: 13 LKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDP-- 70 L A + A+++ GYE + +QA L GRD+L A+TGSGKT AF L + L Sbjct: 7 LPAALRAAIHERGYETLTEVQAAATAPELEGRDLLVSARTGSGKTVAFGLAIANELLGGE 66 Query: 71 -----ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 P L++APTRELA+QVA + + + GG + RAL +G Sbjct: 67 DTFLIRAATPLGLIIAPTRELALQVARELRWLYANT-NAEIATCVGGMDMRDERRALERG 125 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 IVVGTPGRL+DH+ RG+ D S + +VLDEADEML +GF E++E I+ P+ +T + Sbjct: 126 AHIVVGTPGRLVDHINRGSFDTSAIRAVVLDEADEMLDLGFREELELILEDTPKERRTLM 185 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSAT+P+ I + R+ K + S T DI+ V + A+V + D Sbjct: 186 FSATVPKGIAALATRYQKNGLRITTDSDTTAHADIAYEALVVAPGDEENAIVNIVRHSDT 245 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 ++AI+F T+ + + L G++ AL+G+ +Q R L L+ GR + IATDVA Sbjct: 246 ESAIVFCSTRASVNHLVARLGNRGFSVVALSGEFSQKERANALSSLRSGRARVCIATDVA 305 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARGLD+ ++ LV++ D+P D + +HR GRTGRAGR G + L V + RR + + + K Sbjct: 306 ARGLDLPKLDLVIHADLPRDPATLLHRSGRTGRAGRKGISTLIVAPKARRRVERLLQDAK 365 Query: 366 LTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLA 425 + P+A+ + R + A L + D+ L++++ E++ + Sbjct: 366 VEARWGRPPSADEVINRDDTRLLAD--TALTNPMADKEADLVARLMAEHTPEQIATAFIR 423 Query: 426 AALLKMAQGERTLIVPPDAPMRPKREFR-------------DRDDRGPRDRNDRGPRGDR 472 A E V P R RE R +R R PR+ +R PR R Sbjct: 424 KARAGRTAPEDLRDVDDRPPARKPREERGDRGDWQDRPQRAERAPREPREWGEREPREPR 483 Query: 473 EDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIE 532 RP+RER + I VGR + + ++ + GDI IG I++ ++ +E Sbjct: 484 APRPQRERASLDGAVWIAINVGRKKNADPKWLLPMLCKAGDIDRDQIGQIRINNGNTHVE 543 Query: 533 LPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGE 592 L + ++ R+ L G + G R +R R Sbjct: 544 LTPEGAQRLFENAVNGRLEGSLQAFPLEGIPEREDPGAPPPRERDRRPDRPAASRPERSF 603 Query: 593 RREGGRGD-------------GRRFSGERREGRAP--RRDDSTGRRRFGGD 628 R+ R ER G+ R + R R GD Sbjct: 604 ERKPDWNPAERPPRPERPDRPERPERSERPAGKPYEKRSAPRSDRPREDGD 654 >UniRef50_C8P164 ATP-dependent RNA helicase DbpA n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P164_ERYRH Length = 487 Score = 531 bits (1368), Expect = e-149, Method: Composition-based stats. Identities = 155/427 (36%), Positives = 243/427 (56%), Gaps = 3/427 (0%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 + TF + G+ IL+++ LGYE P+ +Q E IP +L+G++++ +QTGSGKTA+F +P Sbjct: 1 MKHTFKNYGIDDSILKSIQYLGYEAPTDVQQEVIPAVLSGKNIVVQSQTGSGKTASFGIP 60 Query: 64 LLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 + ++ + + PQ+LVLAPTRELA+Q+ E + + + R + V AL+G ++ Q + L+ Sbjct: 61 ICHQVEWKKRKPQVLVLAPTRELAIQIQEDLFNLGRFKR-LKVEALFGRSSFEKQAQRLK 119 Query: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183 + I+V TPGRLLDH+ R T+DLS + LV+DEADEM MGFI+ + +I+ +IP+ Q Sbjct: 120 EMTHILVATPGRLLDHMARETVDLSHIETLVIDEADEMFNMGFIDQITSIINRIPKKSQK 179 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAE 243 LFSATMPE ++ + ++K PQ + I++ I + Y+ V K L L E Sbjct: 180 LLFSATMPERVKDLCTLYIKNPQWIDIETESRVEDRIDERYYIVDYPDKMALLESVLITE 239 Query: 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 303 + D++IIF TK V +E G L+G M Q R + L K G L+ATD Sbjct: 240 NPDSSIIFCNTKEQVESVTNFMEDLGCKVDTLHGGMEQRFRTKVLADFKHGLFRYLVATD 299 Query: 304 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 363 VAARGLD++ +SLVVN+D+P ++ESY HR+GRT R + G+A+ F E + + I Sbjct: 300 VAARGLDIDDVSLVVNFDVPENTESYTHRVGRTARVDKYGKAVTFASPYEMKFMNLIIND 359 Query: 364 MKLTIPEVELPNAELLGKRR--LEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDL 421 + +V P L+ RR E + + + D + + + ++ Sbjct: 360 TDHELQKVVKPGQSLVDARRDAFEAKRDRKPKVKKDKAHDFKQEITKIHINAGKKTKMRP 419 Query: 422 ETLAAAL 428 + AL Sbjct: 420 VDVVGAL 426 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 42/105 (40%), Gaps = 2/105 (1%) Query: 462 DRNDRGPRGDREDRPRRERRD--VGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYI 519 R+ + DR+ + ++++ ++ I G+ + +VGA+ + +++ I Sbjct: 378 RRDAFEAKRDRKPKVKKDKAHDFKQEITKIHINAGKKTKMRPVDVVGALCSIEGMNAEDI 437 Query: 520 GNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQ 564 G I + + +E+ G VL I +P + + Sbjct: 438 GVISIVDVSTFVEILNGKGDLVLNALKTMPIKGRPRKVNRANKTE 482 >UniRef50_D1B384 DEAD/DEAH box helicase domain protein n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B384_SULD5 Length = 436 Score = 530 bits (1367), Expect = e-149, Method: Composition-based stats. Identities = 154/414 (37%), Positives = 248/414 (59%), Gaps = 11/414 (2%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F LGL PI +A+ +LGY KP+P+Q + IP +L G+DV+ AQTG+GKTAA++LPLL Sbjct: 3 FEKLGLSEPIRDAVRELGYTKPTPVQNKVIPLVLEGKDVMATAQTGTGKTAAYALPLLHI 62 Query: 68 LDPE------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 L+ + K + L+L PTRELA QV ++ + K++ ++ A+YGG ++ Q + Sbjct: 63 LNKKTQKSTTSKVVRALILVPTRELASQVGASVQAYGKNVP-LSSAAIYGGVKFTPQAKK 121 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 L +G I++ TPGRLL+H+K G +DLS++ +V DEAD +L MGF ++V+T++ P+ Sbjct: 122 LDKGIDILIATPGRLLEHVKLGNVDLSRVEIVVFDEADRILDMGFWDEVQTLLGLFPKKR 181 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 QT LFS + ++++R++ +K+P V I + + Q+ + V RK E L + Sbjct: 182 QTLLFSVGLSKSVKRLSEVSLKKPVTVAINNQGDFAKKVEQTLYLVDKERKCELLSFMIG 241 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 ++ ++F +TK + EV E L +G + L+GD + R Q + K+ + +L+A Sbjct: 242 THNWHQVLVFTKTKQSADEVGEYLNASGLKTLVLHGDKAHSKRTQAIHAFKENAIRVLVA 301 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 TD+A+RGLD+E + V+NY++P D+E Y HR GRTGRAG+ GRA+ V E+ + IE Sbjct: 302 TDIASRGLDIEDLPYVINYELPGDAEDYTHRAGRTGRAGKEGRAISLVAQEEKNKFKEIE 361 Query: 362 RTMKLTIPEVELPNAELLGKRRLEKFAAK--VQQQLESSDLDQYRALLSKIQPT 413 + +K TI P E K +EK A K +Q +++ ++ L K + Sbjct: 362 KILKYTIKTEFYPGFE--TKEWVEKEAKKHTIQAKIDREKANKRPNGLRKKREE 413 >UniRef50_A3FQ59 Putative uncharacterized protein n=1 Tax=Cryptosporidium parvum Iowa II RepID=A3FQ59_CRYPV Length = 586 Score = 530 bits (1367), Expect = e-149, Method: Composition-based stats. Identities = 136/397 (34%), Positives = 210/397 (52%), Gaps = 12/397 (3%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 + + T+F G +++AL G+ +P+ IQ + P L+G D++G+A+TGSGKT F Sbjct: 163 VPKPITSFVTSGFPNFLVDALYRTGFTEPTAIQVQGWPVALSGHDMIGIAETGSGKTLGF 222 Query: 61 SLPLLQNLDPEL-----KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRY 115 LP + ++ + P LVLAPTREL Q+ E F + + A+YGG Sbjct: 223 LLPAMIHIRAQPLLRYGDGPICLVLAPTRELVEQIREQANQFGSIFK-LRNTAIYGGVPK 281 Query: 116 DVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMA 175 Q ++R G +I + PGRL+D L+ G +LS+++ LVLDEAD ML MGF + +++ Sbjct: 282 RPQQASIRNGVEICIACPGRLIDLLEEGYTNLSRVTYLVLDEADRMLDMGFEPQIRKLVS 341 Query: 176 QIPEGHQTALFSATMPEAIRRITRRFMKE-PQEVRIQS--SVTTRPDISQSYWTVWGMRK 232 QI QT L+SAT P+ ++++ R KE P + + S ++ +I Q V K Sbjct: 342 QIRPDRQTLLWSATWPKEVQKLARDLCKEIPIHINVGSVDALKASHNIKQYVNVVEESEK 401 Query: 233 NEALVRFLEA---EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLE 289 L FL E +IF TK + + L +G+ + ++GD Q R L Sbjct: 402 KAKLKMFLGQVMVESAPKVLIFCETKRGADILTKELRLDGWPALCIHGDKKQEERTWVLN 461 Query: 290 RLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFV 349 + G I+IATDVAARGLD++ I+ V+N+D P E Y+HRIGRTGRAG G +L F Sbjct: 462 EFRTGASPIMIATDVAARGLDIKDINFVINFDFPNQIEDYIHRIGRTGRAGATGVSLSFF 521 Query: 350 ENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEK 386 + R+ ++ + +K V +L + + Sbjct: 522 TPDKYRMASDLIKVLKEAKQRVPPELFKLSPQNKRMH 558 >UniRef50_Q15T34 DEAD/DEAH box helicase-like n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15T34_PSEA6 Length = 458 Score = 529 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 149/467 (31%), Positives = 242/467 (51%), Gaps = 15/467 (3%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +F LGL+ ++ A+ GY + IQ E IP +L D+L +AQTG+GKTAAF+LPLLQ Sbjct: 2 SFEALGLRDELIHAIATQGYSVATDIQREAIPLVLAQHDLLAVAQTGTGKTAAFTLPLLQ 61 Query: 67 NL----DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 L +++ + L++ PTRELA QVA ++ +S + + A+YGG R + Q+ L Sbjct: 62 RLAAKQSTKVQGVRSLIVTPTRELAAQVAISVEIYSTQL-NIRSFAVYGGVRIEPQIAQL 120 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 ++G +++ TPGRLLD ++ L L LV DEAD ML +GFI+DV+ I + +P Q Sbjct: 121 QEGVDVLIATPGRLLDLYEQRALHFENLEILVFDEADRMLDLGFIDDVKRIQSLLPVKRQ 180 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 T LFSAT + I+ R + P+ + + + +T ++Q++ + RK+ AL++ ++ Sbjct: 181 TLLFSATFSKQIKHFAREMLNAPKTIEVSAVNSTVDLVAQTFHPIEQARKSAALIQLIQQ 240 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 + ++F+RTK + LE G +A+++ + Q R Q L K G + +L+AT Sbjct: 241 HRWSQTLVFIRTKRTADALVTELEDAGIAAASIHANRTQHARTQALNAFKAGEIQVLVAT 300 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 D+AARG+DV ++ VVNYD+P E YVHRIGRTGRAG G A+ E L+++ER Sbjct: 301 DIAARGIDVSQLPCVVNYDLPYVPEDYVHRIGRTGRAGNTGTAISLFSPDEISQLQSLER 360 Query: 363 TMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLE 422 + + L + A K ++ S++ R + + + Sbjct: 361 YLDQHLKPSTLVGFAPKDQVTKSWSANKANTRVNSAEKPTSRNMENTKHVKGKPP----- 415 Query: 423 TLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPR 469 K+ + + + P + +G R R Sbjct: 416 -----AAKLNIDDEDDELYGNFEADPHTSSSRKQHKGSAGGAKRSRR 457 >UniRef50_C1TPC6 DNA/RNA helicase, superfamily II n=3 Tax=Synergistaceae RepID=C1TPC6_9BACT Length = 605 Score = 529 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 184/592 (31%), Positives = 290/592 (48%), Gaps = 40/592 (6%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 T F L+ +L AL G++ P P+Q + + D++ A+TGSGKT F LPLL Sbjct: 39 TAFDRYELREELLNALAAKGFDSPMPVQEKVLESENRDGDLVVQARTGSGKTLGFLLPLL 98 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 L E P+ILVL+PTRELA Q+A K+M G+ +L GG + Q++ LR+G Sbjct: 99 NELPRETATPRILVLSPTRELAQQIAGEAEWIGKYM-GITTASLVGGMDMERQIKDLRRG 157 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 +VVGTPGR +DH++R TL + +VLDE D ML MGF +D+E I+ +P+ H+T L Sbjct: 158 SALVVGTPGRTMDHIRRRTLKTDTIQTIVLDEGDTMLDMGFRDDIEAILNTLPDPHRTWL 217 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSATMP+ + +T+R++ P + + DI+ + V ++ E LV L E+ Sbjct: 218 FSATMPDEVASLTKRYLDSPSWITLCHDEDQHEDITHRAYLVPSGKRLEGLVNVLLWENP 277 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 + +IF TK T+E E L+ G+ ++AL+GDM+Q R + + GR+ L+AT+VA Sbjct: 278 EMGLIFCHTKAGTVETMERLQEEGFAASALHGDMSQLERNSVMNAFRQGRIPYLVATNVA 337 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARGLDV+ +S V+ +P + E++VHR GRTGRAG+ GR +L + RE+ + + R Sbjct: 338 ARGLDVQGVSHVIQIGLPDNLETFVHRSGRTGRAGQEGRNILVLTPREKGRFKAMLRASS 397 Query: 366 LTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEG--EELDLET 423 + + +P+ + AK Q+ L S L +IQ A+ + + Sbjct: 398 MDLKWANVPDVAEI---------AKAQRGLRESALLGGDEPDQEIQAWADELLDMMAPRD 448 Query: 424 LAAALLK-----------MAQGERTLIVPPDAPMRPKREFRDRD-DRGPRDRNDRGPRGD 471 L A LL+ + + + + + F RD +R PR +RG R Sbjct: 449 LVARLLESYVNGLPNGYDLRKSLQNELENRRSGRDRGDRFSGRDRNRSPRRNENRGNRSS 508 Query: 472 REDRPRRERRDVGDMQLYRIEVGRDDG-VEVRHIVGAIANEGDISSRYIGNIKLFASHST 530 R + ++ GR D V I+ + D+ +GNI++ +H+ Sbjct: 509 FRGRAQS----------IKLSKGRIDQDWSVGRILATVCQALDVDRNEVGNIRMRDNHTE 558 Query: 531 IELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGER 582 +EL NK L+ + + + ER Sbjct: 559 VEL----GPLAADRMNGNG-ANKLSKWGLMDGSSQNQERNTKPSQGRRRWER 605 >UniRef50_C1CWT4 Putative DEAD-box ATP-dependent RNA helicase 3 n=1 Tax=Deinococcus deserti VCD115 RepID=C1CWT4_DEIDV Length = 602 Score = 529 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 192/588 (32%), Positives = 293/588 (49%), Gaps = 67/588 (11%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 F L + + L + G + SPIQAE +P L GRD++G A+TG+GKT AF+LP++Q Sbjct: 2 NFDQL-IAPELAARLAERGITEASPIQAESLPLTLAGRDMIGRARTGTGKTLAFALPIIQ 60 Query: 67 NLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 L+P + P+ +V+APTRELA QVAE FSK G+ V +YGG Y Q ALR Sbjct: 61 KLEPSRERARPPRAIVVAPTRELAKQVAEE---FSKSGVGLTTVTVYGGASYAPQENALR 117 Query: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183 +G +VVGTPGRL+DHL+RG LDLS + VLDEADEML +GF + +ETI+ + P+ QT Sbjct: 118 RGVDVVVGTPGRLIDHLERGNLDLSAVEFAVLDEADEMLSVGFADAIETILQKTPDSRQT 177 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRI--QSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 LFSAT+ I R++R +++EP V + + + V G + L L Sbjct: 178 MLFSATLNNDINRLSRNYLREPVIVDMVGEGKSQAAQTVEHLKVRV-GRSRTRVLADLLT 236 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 + + AI+F RTK E+A L G + AL+GD+ Q+ RE+ L + GR+ +L+A Sbjct: 237 IYNPEKAIVFTRTKREADELANELIHRGLEAEALHGDLAQSQRERALGAFRSGRVGVLVA 296 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 TDVAARGLD+ + LVV Y +P D ESYVHR GRTGRAGR G A++ +RE R + +E Sbjct: 297 TDVAARGLDIPEVDLVVQYHLPQDPESYVHRSGRTGRAGRTGTAIIMYGDRENREVMGLE 356 Query: 362 RTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDL 421 R + E LP + + K +A + ++++S ++A ++ EL L Sbjct: 357 RITGVRFIERPLPTPKEVQAA-SAKTSADMVRKVDSGVAATFQAEAERLF-----SELGL 410 Query: 422 ETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERR 481 E L AL K++ + Sbjct: 411 EALTRALAKISGVTEP------------------------------------TKAASLLS 434 Query: 482 DVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEV 541 + + + + + V +A GD+ +R +G ++ + + ++P ++ Sbjct: 435 GEEGLTTLIL---HGERMSIARTVALLARAGDVDTRRLGKVRQWRGGTVADVPSEYLQKL 491 Query: 542 LQHFTRTRILNKPMNMQLL--------GDAQPHTGGERRGGGRGFGGE 581 L + + +++ + G +GG RG E Sbjct: 492 LAA---NPLEG-EVQIEVAQELPELFEQAVRERREGGYQGGNRGTRDE 535 >UniRef50_C4QFR3 DEAD box ATP-dependent RNA helicase, putative n=2 Tax=Schistosoma RepID=C4QFR3_SCHMA Length = 944 Score = 529 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 140/384 (36%), Positives = 207/384 (53%), Gaps = 19/384 (4%) Query: 2 AEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFS 61 E +F D+ L I E + Y P+P+Q +P + RD++ AQTGSGKTAAF Sbjct: 155 VEPIKSFNDVELHQIIKENVTRAQYIHPTPVQKYALPIIAAKRDLMACAQTGSGKTAAFL 214 Query: 62 LPLLQNLDPELKA-------------PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVA 108 LP+L L + P L+LAPTREL+ Q+ + FS + + Sbjct: 215 LPILNMLFEDNHCENSDASALSCAVCPLALILAPTRELSSQIYDEARKFS-YRSNIKPCV 273 Query: 109 LYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIE 168 +YGG Q+R L G ++V TPGRL+D + RG + L ++ VLDEAD ML MGF Sbjct: 274 VYGGASILAQIRELSHGCNLLVATPGRLVDMVSRGKVSLEQIRFFVLDEADRMLDMGFEP 333 Query: 169 DVETIMAQ--IPE--GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSY 224 + I+ Q +P QT +FSAT P+ I+ + R F+ + + +T +I Q Sbjct: 334 QIRRIVEQHGMPPAGKRQTLMFSATFPKEIQTLARDFLHSYIFLAVGRVGSTNENIIQEV 393 Query: 225 WTVWGMRKNEALVRFLEAEDFD-AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQAL 283 V K + LVR L+ +D D A++FV TK +A+ L + + +++GD Q Sbjct: 394 LNVADKDKPDMLVRLLQGKDPDGLALVFVETKRGADVLAKFLCQLNFPVTSIHGDRPQTE 453 Query: 284 REQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAG 343 RE L+ + GR ILIAT VAARGLD+ + V+N+D+P D E YVHRIGRTGR G+ G Sbjct: 454 REHALQSFRSGRTPILIATAVAARGLDIPNVKHVINFDLPSDIEEYVHRIGRTGRMGQPG 513 Query: 344 RALLFVENRERRLLRNIERTMKLT 367 A F + + ++R++ ++ + Sbjct: 514 SATSFFSEKNQNVVRDLVELLRES 537 >UniRef50_C3RH47 ATP-dependent RNA helicase RhlE n=2 Tax=Bacteria RepID=C3RH47_9MOLU Length = 418 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 142/357 (39%), Positives = 224/357 (62%), Gaps = 7/357 (1%) Query: 24 LGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNL---DPELKAPQ---I 77 + Y+ PSPIQ + IP +++GRD+ G A+TG+GKTAAF+LP+LQ L D K P+ Sbjct: 1 MKYDIPSPIQEQAIPAIISGRDIFGCAKTGTGKTAAFALPILQKLYLRDESEKYPRTIKA 60 Query: 78 LVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLL 137 L+LAPTRELA+Q+ E + + + ++GG R Q+ + +G +++ TPGRL+ Sbjct: 61 LILAPTRELAIQINETFEAMNPQV-NLKSAVIFGGVRQGSQVTKINRGIDVLIATPGRLI 119 Query: 138 DHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRI 197 D +G +DL + LVLDEAD ML MGFI+D+ I+ IP HQT LFSAT+P+ I+ + Sbjct: 120 DLYNQGLVDLKHVEYLVLDEADRMLDMGFIKDIRKILRFIPRRHQTMLFSATLPDEIKHL 179 Query: 198 TRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNA 257 + +P ++ I S T I+QS + V + K + L++ LE AI+FVRTK Sbjct: 180 VSDLLNDPLKIMISSGNVTVEKINQSLYFVDKVNKAKLLIKLLENPQIYNAIVFVRTKRN 239 Query: 258 TLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLV 317 + + L + ++GD +Q R + L K+ ++ +L+A+D+AARG+D++ ++ V Sbjct: 240 VDTLCKKLIKAQITCEGIHGDKSQNARVRALNNFKNDKVRVLVASDIAARGIDIDELTHV 299 Query: 318 VNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELP 374 +N+D+P +E+YVHRIGRT RAG +G A+ F +E+ LL++I++ + IP V+ P Sbjct: 300 INFDLPDQAENYVHRIGRTARAGASGEAITFCSFQEKALLKDIQKFINQDIPVVDNP 356 >UniRef50_A9A5S3 DEAD/DEAH box helicase domain protein n=5 Tax=Thaumarchaeota RepID=A9A5S3_NITMS Length = 440 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 167/375 (44%), Positives = 241/375 (64%), Gaps = 3/375 (0%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 T F +LGLK IL+ LNDLG+E+ PIQ IP LL GRDV+G A TGSGKTAAFSL +L Sbjct: 2 TKFQELGLKEDILKGLNDLGFEEAFPIQEAVIPVLLTGRDVVGQAHTGSGKTAAFSLSML 61 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 Q + P+ Q L++APTRELA+Q+ + + F K+ G+ V +YGGQ +QL AL +G Sbjct: 62 QEIQPK-NGIQGLIMAPTRELAMQITDEIKKFGKYT-GIKVATVYGGQGMGLQLDALERG 119 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 +IVV TPGRL+DHLKRG+++L ++ +VLDEAD ML MGFI+D+ I+ PE +L Sbjct: 120 VEIVVATPGRLIDHLKRGSIELRDVTHIVLDEADTMLDMGFIDDIGFILDLAPEDRVMSL 179 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSATMP I R++ ++ P++ + + + I QSY + K + L+ F++ Sbjct: 180 FSATMPTEILRLSEEYLNNPKQFLLDADDLSGEGIDQSYLVIKDRDKFKYLIDFIK-PTK 238 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 AI+F TK T +VA+ L + +++ A+ GDM+Q REQ++ + + G+ DIL+ATDVA Sbjct: 239 GQAIVFCSTKYRTRDVAKFLHQEKFDAVAIEGDMSQHRREQSMGKFRSGKADILVATDVA 298 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 +RG+DV R+ LV+NYD+P +Y HRIGRT RAG G+A+ FV I+R +K Sbjct: 299 SRGIDVPRVELVINYDVPNQEMAYFHRIGRTARAGAKGKAVTFVSYSSVGDWNLIKRQIK 358 Query: 366 LTIPEVELPNAELLG 380 + I ++ + Sbjct: 359 VPIKDLNEEMGIEIA 373 >UniRef50_D1B8Z1 DEAD/DEAH box helicase domain protein n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B8Z1_THEAS Length = 558 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 193/586 (32%), Positives = 292/586 (49%), Gaps = 38/586 (6%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECI--PHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 F L+ +L AL G+E P P+Q + P L++G D++ A+TGSGKT AF+LPLL Sbjct: 7 FDQYPLRDELLSALRRKGFEHPMPVQVSMLEDPTLVDG-DLIVQAKTGSGKTLAFALPLL 65 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 ++ ++P++LVL+PTRELA+Q A +R + V +L GG + Q++ALR+G Sbjct: 66 NRMEFGERSPKVLVLSPTRELALQTAREFQWLGYDLR-IRVASLVGGMDMERQVKALREG 124 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 +VVGTPGR+LDH++RGT + LVLDE D ML +GF +++E IMA + + ++ L Sbjct: 125 AAVVVGTPGRVLDHIRRGTFRADLVESLVLDEGDHMLDLGFKDELEDIMAAMTQVERSWL 184 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSATMPE + + ++++ P+++ + DI Q + + R+ E L L E Sbjct: 185 FSATMPEEVVTLAKQYLDAPRKISLVEDAAKHDDIVQRAYIIPARRRFEGLANVLLFERP 244 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 I+F TK T E+AE L G+ ++AL+GDM Q R LE L+ GR IL+ATDVA Sbjct: 245 RRGIVFCATKLQTQELAERLCDEGFKASALHGDMTQRERNMALENLRRGRSQILVATDVA 304 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARGLD+ +S V+ + +P E+++HR GRTGRAG+ GR L+ + RE R + R Sbjct: 305 ARGLDISGVSHVIQFGLPGCLETFIHRSGRTGRAGQEGRNLILLTAREAGEFRGMIRGTS 364 Query: 366 LTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLA 425 L + + P+AE L + + ++ + Y +I D + + Sbjct: 365 LEVEWLPAPDAEELESLTRAEIERWCLE--NPAEGEDYMDWAEEILQRE-----DAQLIV 417 Query: 426 AALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGD-REDRPRRERRDVG 484 A LL PK D + R+ R R R+ RP R+ V Sbjct: 418 AGLLS-----------RSFEGIPKGYSIQEDVQAEMARSRRADRPKARDQRPL--RKLVS 464 Query: 485 DMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQH 544 R GR+DG EV ++GA+ I +GNIKL + +EL + Sbjct: 465 GSVTMRFSSGREDGWEVGPLLGALCRGLGIRREDVGNIKLKDRCAFVELSPYAASQ---- 520 Query: 545 FTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFS 590 I + N+ G G R + G +R Sbjct: 521 -----IERRRDNLAREG----LDGFSRSEPRQNHGTQRPRTPSRNR 557 >UniRef50_A2EVI2 DEAD/DEAH box helicase family protein n=1 Tax=Trichomonas vaginalis RepID=A2EVI2_TRIVA Length = 598 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 144/375 (38%), Positives = 215/375 (57%), Gaps = 9/375 (2%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 TF +L L I + + D +EKP+PIQ+ IP L G D++G+A+TGSGKTAAF +P + Sbjct: 126 TFEELNLPDTITKTITDNKWEKPTPIQSVSIPVALKGHDLIGIAKTGSGKTAAFLIPAMV 185 Query: 67 NLDPEL-----KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 ++ + P +LVL+PTRELA Q+AE F ++ + L+GG Q Sbjct: 186 HIGLQEPMYRGDGPIVLVLSPTRELAQQIAEVAKGFCDNLM-IRQTCLFGGAGRGPQAND 244 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 LR P +VV TPGRL+D ++ G +++++ LVLDEAD+ML MGF + I+ I + Sbjct: 245 LRHLPSLVVATPGRLIDFIEGGQCPMNRVNFLVLDEADQMLDMGFEPQIRKIIGHISKDR 304 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSS-VTTRPDISQSYWTVWGMRKNEALVRFL 240 QT +FSAT P+ I+++ F+ +P + I + +TT +I Q K + L Sbjct: 305 QTMMFSATWPKEIQQLAADFLVDPVHMIIGNKDLTTNSNIKQVITKCEEFEKLSKCLEVL 364 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 D IIF +TK T ++ E L G+ + +L+GD Q R+ L + + + IL+ Sbjct: 365 NEHKDDKIIIFTKTKRTTDDLQENLNMKGFQAYSLHGDKAQNQRDFVLGKFRSCKKGILV 424 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATDVAARGLDV I +V+NYD P D E+YVHRIGRT R + G A+ F + + + R + Sbjct: 425 ATDVAARGLDVNDIDIVINYDFPGDIETYVHRIGRTARGNKEGLAVTFFTDENKNMSRKL 484 Query: 361 ERTMKLTIPEVELPN 375 + M + ELP+ Sbjct: 485 AKIMTQA--KQELPD 497 >UniRef50_C5CB97 DNA/RNA helicase, superfamily II n=23 Tax=Bacteria RepID=C5CB97_MICLC Length = 611 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 183/500 (36%), Positives = 265/500 (53%), Gaps = 24/500 (4%) Query: 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 E TFAD G+ I+EAL G P PIQA +P L G D++G A+TG+GKT F +P Sbjct: 36 EQTFADFGVHPAIVEALEAKGIVHPFPIQAMTLPVALGGHDIIGQAKTGTGKTLGFGIPA 95 Query: 65 LQN-----------LDPE--LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYG 111 LQ L+ + APQ L++APTRELAVQVA +T + R + + +YG Sbjct: 96 LQRAIGPGEPGWDGLEAKGTAGAPQALIVAPTRELAVQVAGDLTAAAAR-RPLRIATIYG 154 Query: 112 GQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVE 171 G+ Y+ Q+ L++G +IVVGTPGRL+D +++ L L ++ +VLDEADEML +GF+ DVE Sbjct: 155 GRAYEPQIEELQRGVEIVVGTPGRLIDLMRQRHLRLDLVNTVVLDEADEMLDLGFLPDVE 214 Query: 172 TIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRI---QSSVTTRPDISQSYWTVW 228 T++A +P QT LFSATMP + + RR+M +P +R + T+ DI Q + Sbjct: 215 TLLAAVPAVRQTMLFSATMPGPVVAMARRYMTQPTHIRAADPEDEGLTKKDIRQLVYRAH 274 Query: 229 GMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTL 288 M K+E + R L+AE IIF RTK VA+ L G+ + AL+GD+ Q REQ L Sbjct: 275 HMDKDELVARALQAEGRGRTIIFTRTKRTAARVADELTARGFAAGALHGDLGQGAREQAL 334 Query: 289 ERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLF 348 ++G++DIL+ATDVAARG+DV+ ++ V N+ P D ++YVHR+GRTGRAG G A+ Sbjct: 335 RAFRNGKVDILVATDVAARGIDVDDVTHVFNFQAPEDEKTYVHRVGRTGRAGNKGVAVTL 394 Query: 349 VENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLS 408 V+ + I++ + + P F+ + L Q + +L Sbjct: 395 VDWEDMPRWSLIDKALG-----LGQPEPVETYSSSPHLFSDLGIPKGTKGRLPQAKRVLE 449 Query: 409 KIQPTAEGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGP 468 ++ + E A R D + R R RD G Sbjct: 450 GLEGETLEDLGGPE--AKQRDGGRGRGREGGRSRDGERGGREGGRGRRSGEGRDAARGGG 507 Query: 469 RGDREDRPRRERRDVGDMQL 488 RG+R +R R R + Q Sbjct: 508 RGERSERSGRGRGEAPAEQR 527 >UniRef50_Q6A841 Putative ATP-dependent RNA helicase n=2 Tax=Propionibacterium acnes RepID=Q6A841_PROAC Length = 561 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 177/506 (34%), Positives = 267/506 (52%), Gaps = 33/506 (6%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 T+FADLG++ I +AL +G P PIQA IP + G D++G A+TG+GKT AF + +L Sbjct: 53 TSFADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITIL 112 Query: 66 QNLD----------PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRY 115 + PQ LV+ PTRELA+QV++ ++ + +RG V+ +YGG Y Sbjct: 113 LRITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDIST-AASVRGARVLTVYGGVGY 171 Query: 116 DVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMA 175 + Q+ AL+ G +VVGTPGRLLD +R LDLS + +VLDEADEML +GF+ DVE ++ Sbjct: 172 ESQIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIG 231 Query: 176 QIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSS--VTTRPDISQSYWTVWGMRKN 233 + P QT LFSATMP I + R + P VR + + T PD Q + + K Sbjct: 232 RTPASRQTMLFSATMPAPIMALARSQLHRPVHVRAEGADTQATVPDTQQFVYQAHPLDKI 291 Query: 234 EALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKD 293 E + R L+A D + IIF RTK A +++ L+ G+ + A++GD+ Q RE+ L++ + Sbjct: 292 EIIGRILQANDVEKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRH 351 Query: 294 GRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRE 353 G IL+ATDVAARG+DV +S V+N++ P D ++YVHRIGRTGRAG G A+ V+ + Sbjct: 352 GDATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGVAVTLVDWAD 411 Query: 354 RRLLRNIERTMKLTIPE--------------VELPNAELLGKRRLEKFA-AKVQQQLESS 398 + I + + L + E +++P LEK A K ++Q Sbjct: 412 VTRWKLINKALNLELSEPVETYSTSPHLYTDLDIPEDAQGQIIDLEKAASEKKRRQHRHG 471 Query: 399 DLDQYRALLSKIQPTAEGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDR 458 + ++ + ++ D A K + +V + + D++ Sbjct: 472 HDGSHHEKATRRRSRDASKDGD-----KARRKRIRRRNGKVVRGSSLNPAPHQKADQNRH 526 Query: 459 GPRDRNDRGPRGDREDRPRRERRDVG 484 + G RE RPR R Sbjct: 527 AANSHHHDIVAGPREARPRHRRARNA 552 >UniRef50_B5ZGC1 DEAD/DEAH box helicase domain protein n=3 Tax=Acetobacteraceae RepID=B5ZGC1_GLUDA Length = 427 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 163/370 (44%), Positives = 223/370 (60%), Gaps = 6/370 (1%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 TFADL L +L AL + GY P+PIQA+ IP LL GRD+LGMAQTG+GKTAAF+LP Sbjct: 1 MSMTFADLSLAPTLLRALAEEGYASPTPIQAQSIPMLLEGRDLLGMAQTGTGKTAAFALP 60 Query: 64 LLQNL-----DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQ 118 LL L ++LVLAPTREL Q+A+ F +H +V ++GG Q Sbjct: 61 LLHRLAMAPRPAPKGGARVLVLAPTRELVSQIADGFESFGRHQPP-SVTTIFGGVSQVHQ 119 Query: 119 LRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP 178 + AL+ G I+V PGRLLD + +G DLS+L LVLDEAD+ML MGF +E I+A +P Sbjct: 120 VNALKAGVDIIVAAPGRLLDLIDQGLCDLSQLEALVLDEADQMLDMGFARPIERIVATLP 179 Query: 179 EGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVR 238 + T LFSATMP++I + +++P +V I TT I QS V K AL+ Sbjct: 180 KDRHTVLFSATMPKSIATLAESLLRDPAKVEIAPPSTTVDRIEQSVMFVDAADKKAALLA 239 Query: 239 FLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDI 298 L A++F KN EV + G + AL+G+ +Q RE+ L+ + G + Sbjct: 240 MLRTPGIGQAVVFTLQKNIANEVCAFITEAGITAEALHGNKSQGQRERALDAFRSGTAQV 299 Query: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLR 358 L+ATD+AARG+DV+ ++ V N+D+P ESYVHRIGRTGRAGR G A+ + +R LR Sbjct: 300 LVATDIAARGIDVDTVTHVFNHDLPSLPESYVHRIGRTGRAGRNGFAITLCDAEQRAWLR 359 Query: 359 NIERTMKLTI 368 ++ER + + Sbjct: 360 DVEREIGRAL 369 >UniRef50_D1I3Q7 Whole genome shotgun sequence of line PN40024, scaffold_16.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1I3Q7_VITVI Length = 916 Score = 528 bits (1360), Expect = e-148, Method: Composition-based stats. Identities = 141/386 (36%), Positives = 206/386 (53%), Gaps = 20/386 (5%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL- 64 + FA++ L + + + Y KP+PIQ IP + GRD++ AQTGSGKTAAF P+ Sbjct: 421 SAFAEIHLGEGLNQNIRRCKYVKPTPIQRHAIPIAMAGRDLMACAQTGSGKTAAFCFPII 480 Query: 65 -------LQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDV 117 L L P L+L+PTREL+ Q+ E FS + G+ VV YGG Sbjct: 481 CGILRNQLSRGGARLACPTALILSPTRELSCQIHEEAKKFS-YKTGLKVVVAYGGAPISQ 539 Query: 118 QLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQI 177 Q R L +G I+V TPGRL+D ++R + L + L LDEAD ML MGF + I+ Q+ Sbjct: 540 QFRNLERGVDILVATPGRLVDMIERARVSLRMIKYLALDEADRMLDMGFEPQIRKIVEQM 599 Query: 178 ----PEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKN 233 P QT LFSAT P I+R+ F+ + + ++ I Q V K Sbjct: 600 DMPPPGARQTMLFSATFPNEIQRLAADFLSNYIFLSVGRVGSSTDLIVQRVEFVEDTDKR 659 Query: 234 EALVRFLEAEDFDAA-------IIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQ 286 L+ L+++ + ++FV TK + + L NG + A++GD Q RE+ Sbjct: 660 YHLMDLLQSQMTNRTPKKYALTLVFVETKRGVDALEQWLCMNGLAATAIHGDKVQMERER 719 Query: 287 TLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRAL 346 L+ K G I++ATDVAARGLD+ ++ V+N+D+P + YVHRIGRTGRAG++G A Sbjct: 720 ALKSFKSGATPIMVATDVAARGLDIPHVAHVINFDLPKAIDDYVHRIGRTGRAGKSGLAT 779 Query: 347 LFVENRERRLLRNIERTMKLTIPEVE 372 F + L +++ M+ + EV Sbjct: 780 AFFNDGNLSLAKSLVELMQESNQEVP 805 >UniRef50_B6IS62 DEAD/DEAH box helicase protein n=1 Tax=Rhodospirillum centenum SW RepID=B6IS62_RHOCS Length = 528 Score = 528 bits (1360), Expect = e-148, Method: Composition-based stats. Identities = 180/518 (34%), Positives = 261/518 (50%), Gaps = 24/518 (4%) Query: 2 AEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFS 61 +F+DLGL +L+A+ +LG+ P+PIQ + +P L GRDV+ A TG+GKTAAF Sbjct: 4 VTGSVSFSDLGLLPHLLKAVEELGFTTPTPIQQQALPAALTGRDVVASANTGTGKTAAFV 63 Query: 62 LPLLQNLDPELK-----APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYD 116 LP LQ + + P++LVL PTRELA QV E++ + SK R + + GG Y Sbjct: 64 LPSLQRIATTARAEAAWGPRVLVLTPTRELASQVLESVRNLSKFGR-IQTGTILGGMPYR 122 Query: 117 VQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQ 176 QL LR+ ++V TPGRL+DH++RG LDLS + LVLDEAD ML MGF E VE I A Sbjct: 123 QQLEMLRRRVDLIVATPGRLMDHMERGRLDLSGVEVLVLDEADRMLDMGFREAVEFIAAA 182 Query: 177 IPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWG-MRKNEA 235 P QT LF+AT+ R+ + ++P + + + Q + G K+ Sbjct: 183 CPAERQTLLFTATLDRTAERLAQTLTRDPVRIDVAGKAVVTAQVEQRWLRADGLEHKHRL 242 Query: 236 LVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGR 295 L L E+F I+F+ TK +A+ L G+ + L+GDM Q R + ++ L+DGR Sbjct: 243 LETLLGGEEFGKGIVFIATKLDADRLADTLSEKGHKAMPLHGDMQQRDRNRVVQWLRDGR 302 Query: 296 LDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERR 355 +++++ATDVAARG+D+ ++ V+N+D+P +E YVHRIGRTGRAG +G + E R Sbjct: 303 INVIVATDVAARGIDIADLTHVINFDLPKQAEDYVHRIGRTGRAGASGVSYSLFTRMEWR 362 Query: 356 LLRNIERTMKLTIPEVELPNAELLGK---------RRLEKFAAKVQQQLESSDLDQYRAL 406 +R IE LP E + + + + + Sbjct: 363 QVRAIEAYTNKAADMHVLPGLEPMPEPERRPGGFNKGRPGGGKPGFKGRGFGGGNGGGGG 422 Query: 407 LSKIQPTAEGEELDLETLAAALLKMAQGERTLIVPPDAPMRP-KREFRDR----DDRGPR 461 +P E + + QG+R P A +R F DR +G R Sbjct: 423 YRGNRPWGERRDGERSFGDRPFGDRPQGDRPHGDRPHADRPHGERSFGDRPHGDRPQGER 482 Query: 462 DRND--RGPRGDREDRPRRERRDVG-DMQLYRIEVGRD 496 RND RG R E RP ER + +R + G Sbjct: 483 FRNDRPRGDRPHGEHRPHGERGHSERPARSFRQDAGSA 520 >UniRef50_D1Y000 ATP-dependent RNA helicase DeaD family protein n=2 Tax=Prevotella RepID=D1Y000_9BACT Length = 589 Score = 528 bits (1360), Expect = e-148, Method: Composition-based stats. Identities = 169/494 (34%), Positives = 270/494 (54%), Gaps = 17/494 (3%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F +L L +L+AL D+ +++ +P+Q +CIPH+L G+D+L +AQTG+GKTAA+ LP+L Sbjct: 3 FDELDLNDNVLDALYDMHFDECTPVQEQCIPHILKGKDILAVAQTGTGKTAAYLLPILSK 62 Query: 68 LDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQR---YDVQLRA 121 L A L+++PTRELA Q+ + M FS ++ GV+ VA+YGG YD ++++ Sbjct: 63 LADGGYPEDAINCLIMSPTRELAQQIDQGMQGFSYYLNGVSCVAVYGGNDGNRYDQEIKS 122 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 L G +++ TPGR + H+ G +DLSK+S VLDEAD ML MGF ED++TI ++P Sbjct: 123 LALGADVIIATPGRFISHISLGNVDLSKVSFFVLDEADRMLDMGFSEDIKTIAKKLPSTC 182 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 QT +FSATMP I + + +KEP+ V++ I QS + + +K E + + Sbjct: 183 QTIMFSATMPSKIEDLAKTLLKEPEMVKLA-VSKPAEKIQQSAYVCYETQKIEIIKDIFK 241 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 A D IIF +K ++A +L R N ++ D++QA R+ + + K G++D+L+A Sbjct: 242 AGDLHRVIIFSGSKQKVKQIASSLNRKHINCGEMHSDLDQAQRDDVMFKFKSGQIDVLVA 301 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 TD+ ARG+D++ I++V+NYD+P D E YVHRIGRT RA R G A+ FV + + IE Sbjct: 302 TDIVARGIDIDDITMVINYDVPHDVEDYVHRIGRTARADRDGVAITFVNGDDIYYFQQIE 361 Query: 362 RTMKLTIPEVELP-----NAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEG 416 ++ TI + LP E R K ++ D ++ S + Sbjct: 362 SFLEKTIEKNRLPEALGEGPEYKSNGRPSKNKKAKNRRRHDRDQQSHKDKKSNYRRVKNR 421 Query: 417 EELDLETLAAALLKMAQGERTLIVPPDAPMRPK-----REFRDRDDRGPRDRNDRGPRGD 471 +E T K E+ D P+ + + R++ + R ++ P+G+ Sbjct: 422 QEQPAPTDEKEQHKPQTSEKKSEKVQDKGNIPEVGATAEQGKSRNNNRQKQRRNKDPKGN 481 Query: 472 REDRPRRERRDVGD 485 E R + + Sbjct: 482 NELREKNNGASEKN 495 >UniRef50_UPI00006CD03A P68-like protein, putative n=1 Tax=Tetrahymena thermophila RepID=UPI00006CD03A Length = 699 Score = 527 bits (1359), Expect = e-148, Method: Composition-based stats. Identities = 141/393 (35%), Positives = 216/393 (54%), Gaps = 29/393 (7%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAE-------------------CIPHLLNGRDVLG 48 + + I+ + D + +P PIQA+ P +L+G D++G Sbjct: 196 WNETKFPKYIMSVIEDSKFSEPMPIQAQYVTNKKQKKKYKMYECSFIPFPIVLSGHDLIG 255 Query: 49 MAQTGSGKTAAFSLPLLQNLDPEL-----KAPQILVLAPTRELAVQVAEAMTDFSKHMRG 103 +AQTGSGKT +F LP L +++ + + P LVLAPTRELA Q+ E F + Sbjct: 256 IAQTGSGKTLSFMLPALVHINAQDPVKPGEGPIALVLAPTRELANQIQEQCFKFGSKCK- 314 Query: 104 VNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLR 163 ++ V +YGG Q + LR G IV+ TPGRL+D L+ +DL +++ LVLDEAD ML Sbjct: 315 ISSVCVYGGAPKIYQEKELRNGCDIVIATPGRLIDFLESNVIDLKRVTYLVLDEADRMLD 374 Query: 164 MGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMK-EPQEVRIQS-SVTTRPDIS 221 MGF + I+ QI QT +FSAT P+ +RR+ F +P ++I DI Sbjct: 375 MGFEPSIRKIVGQIRPDRQTLMFSATWPQTVRRLALDFCHGDPIHIQIGDMENNVNNDID 434 Query: 222 QSYWTVWGMRKNEALVRFLEAEDF-DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMN 280 Q + +K + + L D IIF +TK ++++AL+ + + ++GD + Sbjct: 435 QQVEIIDKSQKYDRVKEILSTMTRSDKTIIFTQTKKDCDDLSKALQTDNIRNICIHGDKS 494 Query: 281 QALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAG 340 Q R++ ++ K GR++ LIATDVA+RGLDV+ I LV+NYD P E YVHR+GRTGRAG Sbjct: 495 QRDRDKVMDLFKTGRVNTLIATDVASRGLDVKDIKLVINYDFPKQIEDYVHRVGRTGRAG 554 Query: 341 RAGRALLFVENRERRLL-RNIERTMKLTIPEVE 372 G+A+ F++ E + + + + +K E+ Sbjct: 555 AQGKAISFLDQYEDKKISKELVDVLKQNNQEIS 587 >UniRef50_Q1CXY8 ATP-independent RNA helicase DbpA n=3 Tax=Deltaproteobacteria RepID=Q1CXY8_MYXXD Length = 461 Score = 527 bits (1359), Expect = e-148, Method: Composition-based stats. Identities = 168/416 (40%), Positives = 243/416 (58%), Gaps = 4/416 (0%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F+ L L P+L+ L +L ++ +PIQA+ IP LL GRD++G AQTGSGKTAAF+LPLLQ Sbjct: 3 FSALALSPPLLQVLEELDFKTATPIQAQSIPVLLQGRDLVGQAQTGSGKTAAFALPLLQK 62 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 + + + Q LVL PTREL QVA + + + G+ V+ L GGQ QL AL +G Sbjct: 63 VQLQHRKVQALVLCPTRELCAQVAGEIRRLGRRLPGLQVLVLAGGQPIRPQLEALEKGAH 122 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 + VGTPGR++D L R L+ +LS +VLDEAD ML MGF ED+E I+ +P QT LFS Sbjct: 123 LAVGTPGRVMDVLDREALETRQLSTVVLDEADRMLDMGFREDMERILGAMPPRRQTVLFS 182 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 AT P I ++R F ++P V ++++ T PDI Q + K L+R L + Sbjct: 183 ATFPPDIEALSRDFQRQPVRVTVEAA-TAGPDIQQVRYDCEPGDKQALLLRILRHYQPAS 241 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 AI+F K +E+ ++L +G + L GD+ Q R++ + + ++ +LIATDVA R Sbjct: 242 AIVFCNLKATVVELKKSLSASGVSVDGLQGDLEQFERDRVMAKFRNQSTRVLIATDVAGR 301 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 G+DVE + V+N+D+PM +E YVHRIGRTGRAGRAG A+ V R+ R + +I+ + Sbjct: 302 GIDVEALDAVINFDLPMQAEPYVHRIGRTGRAGRAGLAVSIVTPRDGRKVDDIQLATGVK 361 Query: 368 IPEVE---LPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELD 420 + + LP+A+ LE + D + +L + A G E Sbjct: 362 LERGDVESLPSADPRNAVSLESTWDTLYISAGRKDKMRPGDILGALTGEAGGLEAT 417 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 20/133 (15%), Positives = 42/133 (31%), Gaps = 1/133 (0%) Query: 430 KMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDMQLY 489 + + R + R R+ D PR Sbjct: 329 RTGRAGRAGLAVSIVTPRDGRKVDDIQLATGVKLERGDVESLPSADPRNAVSLESTWDTL 388 Query: 490 RIEVGRDDGVEVRHIVGAIANE-GDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTRT 548 I GR D + I+GA+ E G + + +G I++ + + + + + Q + Sbjct: 389 YISAGRKDKMRPGDILGALTGEAGGLEATDVGKIEIQDHVAYVAVARRVSRVAFQRLSEG 448 Query: 549 RILNKPMNMQLLG 561 RI + ++ + Sbjct: 449 RIKGRRYKIERVK 461 >UniRef50_Q98RE0 ATP-DEPENDENT RNA HELICASE n=1 Tax=Mycoplasma pulmonis RepID=Q98RE0_MYCPU Length = 480 Score = 527 bits (1359), Expect = e-148, Method: Composition-based stats. Identities = 163/477 (34%), Positives = 262/477 (54%), Gaps = 2/477 (0%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F + +K+ IL++L+++G+EKP+ IQ +P G+D++G AQTG+GKTAAF++P+L N Sbjct: 3 FTQMNIKSEILKSLDEIGFEKPTKIQEAVLPFAFEGKDIIGQAQTGTGKTAAFAIPILSN 62 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 LD + Q LV+APTRELA Q+ + + K+ + + GG Y+ Q AL G Sbjct: 63 LDCSINRIQHLVIAPTRELANQIYDQLNILGKYTCS-KIALILGGVSYEKQKAALNSGVN 121 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 IVV TPGRL D L + +DLS + LDEADE+L++GF ++ IM ++P+ Q F+ Sbjct: 122 IVVATPGRLEDLLAQNKIDLSHIKTFTLDEADELLKIGFYNEIIKIMNKLPKKRQNFFFT 181 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 AT E +++++ E + + + S + T I Q++ V K LV+FL+ + A Sbjct: 182 ATFDEKTKKLSQEITNEAKMISMSSGLETTEKIDQNFVVVSEEEKLITLVKFLDFKKPTA 241 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 ++IF RTK E+A AL+ G+++ + GDM Q R L R KD +++I++ATDV AR Sbjct: 242 SVIFGRTKRRVDELASALQELGFSAVGIQGDMVQKDRTSVLNRFKDQKVNIIVATDVMAR 301 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 G+DV + LV N+D+P + E Y HRIGRTGR R G+A+ FV+ E + I K Sbjct: 302 GIDVSHVDLVFNFDLPEEIEYYTHRIGRTGRGTRIGQAISFVKKPEVGYIYKIMTETKSI 361 Query: 368 IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAA 427 I E+ +P+ E L + K+ LE + +R + + +L L + Sbjct: 362 IKEISIPSKEHLQTVWEDHLINKLSSILEDAQNKHWREDVVQKDILERYSPRELSILLWS 421 Query: 428 LLKMAQG-ERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDV 483 + +G + L + P+ P+R K+ R + + +R + ++R Sbjct: 422 YIIQEKGLRKNLKLTPEPPVRYKKNNDSNKGRFQSRTSSHLEKRNRRNFNSKKREGF 478 >UniRef50_A6NSW7 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NSW7_9BACE Length = 400 Score = 526 bits (1357), Expect = e-148, Method: Composition-based stats. Identities = 155/369 (42%), Positives = 232/369 (62%), Gaps = 2/369 (0%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 +ADLGL A +++A++ GY + +P+QA IP+ + +DV+ A TG+GKT AF +P++ Sbjct: 12 VNYADLGLSAEVMKAIDKKGYVRATPVQAGAIPYFMEWKDVIAKAPTGTGKTFAFGIPMV 71 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 +++DPE A Q LVLAPTRELA+Q+ + + D + GV V LYGG + Q+ L++ Sbjct: 72 EHIDPESDAVQALVLAPTRELALQIQDELRDLCEFKEGVRSVCLYGGAPIEKQITTLKKH 131 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 PQIVV TPGRL+DH+KR T+ L K+ +VLDEAD ML MGFI DV I+ QI L Sbjct: 132 PQIVVATPGRLMDHMKRRTVKLDKVETVVLDEADRMLDMGFIHDVTRILDQIKSRKNLGL 191 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM-RKNEALVRFLEAED 244 FSAT+ + I+ + ++P E+ ++ +PDI Q + G K E +V L Sbjct: 192 FSATISREVMDISWVYQRDPVEIVVRPDEENKPDIQQYRIDLEGRGDKLETMVALLTHGG 251 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 ++ AI F TKN T ++ L+ G + A++GD+ Q +RE+TL+ ++G++ +L+ATDV Sbjct: 252 YERAIAFCNTKNMTDRLSGLLQMRGITAQAIHGDIQQRIREKTLQAFREGKMRVLVATDV 311 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLF-VENRERRLLRNIERT 363 AARGLD++ + +V NYD+P + E Y+HRIGRTGRA R G A V E+ + I + Sbjct: 312 AARGLDIDDVDVVFNYDVPDEIEYYIHRIGRTGRAKRHGVAYSLVVGITEQMKMEQIAKN 371 Query: 364 MKLTIPEVE 372 K I ++ Sbjct: 372 TKADITVLK 380 >UniRef50_C6WM51 DEAD/DEAH box helicase domain protein n=83 Tax=Actinobacteria (class) RepID=C6WM51_ACTMD Length = 609 Score = 526 bits (1357), Expect = e-148, Method: Composition-based stats. Identities = 165/363 (45%), Positives = 228/363 (62%), Gaps = 4/363 (1%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 TF +LG++ I+ AL + G E+ IQ +P L G DV+G A+TG+GKT F +PLLQ Sbjct: 53 TFTELGVREEIVRALGEAGIERAFAIQELTLPLALAGEDVIGQARTGTGKTLGFGIPLLQ 112 Query: 67 N-LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 + P PQ LV+ PTREL +QV +TD SKHM V V+A+YGG+ Y+ Q+ ALR+G Sbjct: 113 RVITPGDGTPQALVVVPTRELCLQVTHDLTDASKHM-DVRVLAIYGGRPYEPQIAALRKG 171 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 +VVGTPGRLLD ++ L L K+ LVLDEADEML +GF+ D+E ++ +P+ QT L Sbjct: 172 VDVVVGTPGRLLDLAEQRHLVLGKVRSLVLDEADEMLDLGFLPDIERVLRMVPDERQTML 231 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQ--SSVTTRPDISQSYWTVWGMRKNEALVRFLEAE 243 FSATMP I + R F+ +P VR + + Q + + K E L R L+A Sbjct: 232 FSATMPGPIITLARTFLNQPTHVRAEENDAGAVHERTEQFIYRAHALDKVELLARVLQAR 291 Query: 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 303 D ++IF RTK +VA+ + G+ AA++GD+ Q REQ L + G++D+L+ATD Sbjct: 292 DRGLSMIFTRTKRTAQKVADDMAERGFAVAAVHGDLGQGAREQALRAFRSGKIDVLVATD 351 Query: 304 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 363 VAARG+DVE ++ VVNY P D ++YVHRIGRTGRAGR G A+ V+ E + I Sbjct: 352 VAARGIDVEGVTHVVNYQCPEDEKTYVHRIGRTGRAGRTGVAVTLVDWDEIPRWQMISDA 411 Query: 364 MKL 366 + L Sbjct: 412 LNL 414 >UniRef50_D2B0M6 Putative uncharacterized protein n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2B0M6_STRRD Length = 697 Score = 526 bits (1356), Expect = e-148, Method: Composition-based stats. Identities = 164/371 (44%), Positives = 231/371 (62%), Gaps = 7/371 (1%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 TTF DLG+ I +AL G P PIQ +P LNG+D++G A+TG+GKT AF + +L Sbjct: 39 TTFRDLGVTPEIADALETEGIITPFPIQEMALPLALNGQDIIGQARTGTGKTYAFGVAML 98 Query: 66 QNL---DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 Q + K P+ LV+ PTRELAVQV E + + + G ++ +YGG+ Y+ Q+ AL Sbjct: 99 QRVGKPRKNRKKPRGLVVVPTRELAVQVTEDLVTAAGKL-GSRILTVYGGRAYEPQVEAL 157 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 +QG ++VGTPGRLLD +K+ LDL ++ LVLDEAD ML +GF+ D+E I+ IPE Q Sbjct: 158 KQGVDVIVGTPGRLLDLVKQKHLDLGQIDVLVLDEADRMLDLGFLPDIERIIKLIPEKRQ 217 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRI---QSSVTTRPDISQSYWTVWGMRKNEALVRF 239 T LFSAT+P I ++RR++ P VR + P +Q W M K E + R Sbjct: 218 TMLFSATLPGEIVALSRRYLTRPTHVRAENNDAEAEATPQTTQFVWRAHRMDKIEIVGRL 277 Query: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299 L+ + +IF TK A V E L+ G+ +AA++GD+ Q REQ L ++G++D+L Sbjct: 278 LQCDGRGLTMIFCETKRACDMVVEQLKERGFAAAAVHGDLGQGQREQALRAFRNGKIDVL 337 Query: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359 +ATDVAARG+DV+ ++ VVNYD P D ++YVHRIGRTGRAG+ G A+ FVE + + Sbjct: 338 VATDVAARGIDVDDVTHVVNYDCPQDEKAYVHRIGRTGRAGKTGVAVTFVEWEDLTRWKV 397 Query: 360 IERTMKLTIPE 370 I + L E Sbjct: 398 INNALSLDFAE 408 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0A9P7 Cold-shock DEAD box protein A n=201 Tax=Bacteria... 798 0.0 UniRef50_A2SQE1 DEAD/DEAH box helicase domain protein n=17 Tax=c... 721 0.0 UniRef50_B4SPP3 DEAD/DEAH box helicase domain protein n=16 Tax=c... 704 0.0 UniRef50_A6T3R2 ATP-dependent RNA helicase n=86 Tax=Bacteria Rep... 702 0.0 UniRef50_Q7UG20 ATP-dependent RNA helicase n=2 Tax=Bacteria RepI... 701 0.0 UniRef50_Q1MY97 DEAD/DEAH box helicase-like protein n=1 Tax=Berm... 701 0.0 UniRef50_C8WWM6 DEAD/DEAH box helicase domain protein n=1 Tax=Al... 700 0.0 UniRef50_Q3IJ60 ATP-dependent RNA helicase, cold shock protein A... 699 0.0 UniRef50_Q5NZY2 ATP-dependent RNA helicase DeaD n=12 Tax=Bacteri... 699 0.0 UniRef50_B1VFV5 ATP-dependent RNA helicase n=35 Tax=cellular org... 697 0.0 UniRef50_C4LJP9 ATP-dependent RNA helicase n=15 Tax=Bacteria Rep... 695 0.0 UniRef50_C6VX00 DEAD/DEAH box helicase domain protein n=1 Tax=Dy... 694 0.0 UniRef50_P44586 Cold-shock DEAD box protein A homolog n=29 Tax=P... 694 0.0 UniRef50_B0TII3 Dead/deah box helicase n=18 Tax=Bacteria RepID=B... 692 0.0 UniRef50_C5EJJ1 DEAD/DEAH box helicase domain-containing protein... 691 0.0 UniRef50_D2RJY3 DEAD/DEAH box helicase domain protein n=2 Tax=Fi... 689 0.0 UniRef50_C9RIQ5 DEAD/DEAH box helicase domain protein n=1 Tax=Fi... 685 0.0 UniRef50_C5S7U5 DEAD/DEAH box helicase domain protein n=1 Tax=Al... 684 0.0 UniRef50_D2NRF7 Superfamily II DNA and RNA helicase n=3 Tax=Bact... 681 0.0 UniRef50_B8J1L5 DEAD/DEAH box helicase domain protein n=3 Tax=Ba... 677 0.0 UniRef50_A8SKI7 Putative uncharacterized protein n=1 Tax=Parvimo... 676 0.0 UniRef50_D2LSA7 DEAD/DEAH box helicase domain protein n=1 Tax=Ba... 676 0.0 UniRef50_D2QD85 DEAD/DEAH box helicase domain protein n=1 Tax=Sp... 674 0.0 UniRef50_C7HXF4 DEAD/DEAH box helicase domain protein n=3 Tax=Ba... 673 0.0 UniRef50_C5RIK3 DEAD/DEAH box helicase domain protein n=3 Tax=Cl... 672 0.0 UniRef50_C5CGQ2 DEAD/DEAH box helicase domain protein n=1 Tax=Ko... 672 0.0 UniRef50_Q11UP8 ATP-dependent RNA helicase (Cold-shock DEAD-box ... 671 0.0 UniRef50_A4BET4 DEAD/DEAH box helicase-like protein n=1 Tax=Rein... 668 0.0 UniRef50_Q5ZT20 ATP-dependent RNA helicase n=4 Tax=Legionella pn... 667 0.0 UniRef50_A6KZW9 ATP-dependent RNA helicase n=51 Tax=Bacteria Rep... 666 0.0 UniRef50_A4C3X3 RNA helicase DeaD n=3 Tax=Alteromonadales RepID=... 666 0.0 UniRef50_Q2NEZ7 Predicted helicase n=20 Tax=cellular organisms R... 666 0.0 UniRef50_C0Q9A4 DeaD n=1 Tax=Desulfobacterium autotrophicum HRM2... 666 0.0 UniRef50_C0W1P0 Superfamily II helicase n=2 Tax=Actinomyces RepI... 665 0.0 UniRef50_A6M3F5 DEAD/DEAH box helicase domain protein n=5 Tax=Cl... 664 0.0 UniRef50_Q3AX69 DEAD/DEAH box helicase-like n=18 Tax=cellular or... 660 0.0 UniRef50_A6VJ89 DEAD/DEAH box helicase domain protein n=5 Tax=Eu... 659 0.0 UniRef50_C1IBN1 DEAD-box ATP dependent DNA helicase n=1 Tax=Clos... 656 0.0 UniRef50_Q11039 Cold-shock DEAD box protein A homolog n=27 Tax=B... 655 0.0 UniRef50_Q0ST49 ATP-dependent RNA helicase, DEAD/DEAH box family... 653 0.0 UniRef50_A8REA9 Putative uncharacterized protein n=1 Tax=Eubacte... 651 0.0 UniRef50_A0Z0M4 ATP-dependent RNA helicase n=1 Tax=marine gamma ... 650 0.0 UniRef50_C0EAN9 Putative uncharacterized protein n=1 Tax=Clostri... 650 0.0 UniRef50_C8P265 DEAD/DEAH family ATP-dependent RNA helicase n=1 ... 647 0.0 UniRef50_Q8D2Y1 DeaD protein n=2 Tax=Enterobacteriaceae RepID=Q8... 647 0.0 UniRef50_Q725W5 ATP-dependent RNA helicase, DEAD/DEAH family n=3... 647 0.0 UniRef50_B9Y818 Putative uncharacterized protein n=1 Tax=Holdema... 646 0.0 UniRef50_Q46G62 ATP-dependent RNA helicase n=7 Tax=cellular orga... 645 0.0 UniRef50_B9ZPI5 DEAD/DEAH box helicase domain protein n=2 Tax=Ba... 642 0.0 UniRef50_B0U160 DEAD-box subfamily ATP-dependent helicase n=18 T... 642 0.0 UniRef50_D0WN23 ATP-dependent RNA helicase DeaD n=1 Tax=Actinomy... 640 0.0 UniRef50_A5FH88 DEAD/DEAH box helicase domain protein n=21 Tax=B... 640 0.0 UniRef50_Q6AMK6 Probable ATP-dependent RNA helicase n=1 Tax=Desu... 639 0.0 UniRef50_Q484Q1 RNA helicase DeaD n=1 Tax=Colwellia psychrerythr... 639 0.0 UniRef50_D1BSR4 DEAD/DEAH box helicase domain protein n=5 Tax=Ac... 638 0.0 UniRef50_Q31AC4 DEAD/DEAH box helicase-like protein n=9 Tax=Proc... 637 0.0 UniRef50_Q1QYG3 DEAD/DEAH box helicase-like protein n=1 Tax=Chro... 637 0.0 UniRef50_C5C5R9 DEAD/DEAH box helicase domain protein n=1 Tax=Be... 637 0.0 UniRef50_A9ENG9 ATP-independent RNA helicase n=18 Tax=Bacteria R... 636 0.0 UniRef50_C7MCD0 DNA/RNA helicase, superfamily II n=2 Tax=Actinom... 635 e-180 UniRef50_A5CVQ6 ATP-dependent RNA helicase DeaD n=2 Tax=sulfur-o... 635 e-180 UniRef50_Q0AVQ9 ATP-dependent RNA helicase n=1 Tax=Syntrophomona... 632 e-179 UniRef50_B0P7Y4 Putative uncharacterized protein n=1 Tax=Anaerot... 632 e-179 UniRef50_A9NFC3 DEAD box ATP-dependent RNA helicase n=1 Tax=Acho... 631 e-179 UniRef50_B7VSB7 ATP-dependent RNA helicase n=74 Tax=Gammaproteob... 630 e-179 UniRef50_A7HKQ8 DEAD/DEAH box helicase domain protein n=1 Tax=Fe... 630 e-179 UniRef50_B1ZXI6 DEAD/DEAH box helicase domain protein n=3 Tax=Ve... 629 e-179 UniRef50_D1N203 DEAD/DEAH box helicase domain protein n=1 Tax=Vi... 629 e-179 UniRef50_Q48FQ8 ATP-dependent RNA helicase, DEAD box family n=23... 629 e-179 UniRef50_B1V958 DEAD/DEAH box helicase-like n=4 Tax=Candidatus P... 627 e-178 UniRef50_Q5L3G9 DEAD-box ATP-dependent RNA helicase cshA n=94 Ta... 626 e-178 UniRef50_C0YHR5 ATP-dependent RNA helicase n=1 Tax=Chryseobacter... 623 e-177 UniRef50_A4C1L2 ATP-dependent RNA helicase n=2 Tax=Polaribacter ... 622 e-177 UniRef50_C7RHZ9 DEAD/DEAH box helicase domain protein n=3 Tax=An... 621 e-176 UniRef50_B8FMI0 DEAD/DEAH box helicase domain protein n=1 Tax=De... 620 e-176 UniRef50_Q81IT9 DEAD-box ATP-dependent RNA helicase cshA n=84 Ta... 618 e-175 UniRef50_B2UNH8 DEAD/DEAH box helicase domain protein n=1 Tax=Ak... 617 e-175 UniRef50_A9BJS7 DEAD/DEAH box helicase domain protein n=2 Tax=ce... 617 e-175 UniRef50_UPI00016C471F RNA helicase DeaD n=1 Tax=Gemmata obscuri... 616 e-175 UniRef50_Q65N62 DEAD-box ATP-dependent RNA helicase cshA n=135 T... 616 e-175 UniRef50_C6X450 Cold-shock DEAD-box protein A n=1 Tax=Flavobacte... 614 e-174 UniRef50_C0AEG7 DEAD/DEAH box helicase domain protein (Fragment)... 612 e-173 UniRef50_Q2FKY7 DEAD/DEAH box helicase-like n=1 Tax=Methanospiri... 611 e-173 UniRef50_A6DIU5 Probable ATP dependent RNA helicase n=1 Tax=Lent... 610 e-173 UniRef50_Q04VV9 ATP-dependent RNA helicase (Superfamily II) n=4 ... 607 e-172 UniRef50_Q2LY23 Superfamily II DNA and RNA helicases n=2 Tax=Bac... 607 e-172 UniRef50_D0JAM0 ATP-dependent RNA helicase n=2 Tax=Blattabacteri... 601 e-170 UniRef50_D1B4W7 DEAD/DEAH box helicase domain protein n=2 Tax=Ba... 601 e-170 UniRef50_D2QWU0 DEAD/DEAH box helicase domain protein n=1 Tax=Pi... 600 e-170 UniRef50_B3RIS6 Putative uncharacterized protein n=1 Tax=Trichop... 599 e-169 UniRef50_D1U888 DEAD/DEAH box helicase domain protein n=1 Tax=De... 599 e-169 UniRef50_C7NBE3 DEAD/DEAH box helicase domain protein n=3 Tax=Le... 597 e-169 UniRef50_C6BZ63 DEAD/DEAH box helicase domain protein n=1 Tax=De... 597 e-169 UniRef50_C5SI45 DEAD/DEAH box helicase domain protein n=1 Tax=As... 597 e-169 UniRef50_Q26CN9 ATP-dependent RNA helicase n=2 Tax=cellular orga... 596 e-169 UniRef50_Q82T78 RhlE; ATP-dependent RNA helicase RhlE n=1 Tax=Ni... 596 e-168 UniRef50_C5LBR0 RNA helicase, putative n=4 Tax=Perkinsus marinus... 594 e-168 UniRef50_Q8MZI3 CG10077, isoform A n=15 Tax=Eukaryota RepID=Q8MZ... 593 e-168 UniRef50_C8PQM8 DEAD/DEAH box helicase n=1 Tax=Treponema vincent... 592 e-167 UniRef50_C4ZJL9 DEAD/DEAH box helicase domain protein n=1 Tax=Th... 592 e-167 UniRef50_Q0HYG8 DEAD/DEAH box helicase domain protein n=78 Tax=B... 592 e-167 UniRef50_P24782 ATP-dependent RNA helicase dbp2 n=63 Tax=Eukaryo... 591 e-167 UniRef50_B2V9H9 DEAD/DEAH box helicase domain protein n=4 Tax=Hy... 590 e-167 UniRef50_P25888 ATP-dependent RNA helicase rhlE n=363 Tax=root R... 589 e-166 UniRef50_C2ME86 ATP-dependent RNA helicase, dead/deah box family... 588 e-166 UniRef50_Q0W8H7 ATP-dependent RNA helicase n=1 Tax=uncultured me... 588 e-166 UniRef50_D2LXV0 DEAD/DEAH box helicase domain protein n=1 Tax=Ba... 587 e-166 UniRef50_Q0AFH3 DEAD/DEAH box helicase domain protein n=1 Tax=Ni... 587 e-166 UniRef50_C6Q9Z2 DEAD/DEAH box helicase domain protein n=1 Tax=Hy... 586 e-165 UniRef50_P24783 ATP-dependent RNA helicase DBP2 n=131 Tax=Eukary... 585 e-165 UniRef50_C4G990 Putative uncharacterized protein n=1 Tax=Shuttle... 585 e-165 UniRef50_C6WW85 DEAD/DEAH box helicase domain protein n=1 Tax=Me... 585 e-165 UniRef50_Q92841 Probable ATP-dependent RNA helicase DDX17 n=25 T... 584 e-165 UniRef50_Q126W4 DEAD/DEAH box helicase-like n=153 Tax=Bacteria R... 583 e-165 UniRef50_Q8YXJ0 ATP-dependent RNA helicase n=24 Tax=Cyanobacteri... 583 e-165 UniRef50_P17844 Probable ATP-dependent RNA helicase DDX5 n=52 Ta... 583 e-165 UniRef50_A8TFK3 DEAD/DEAH box helicase domain protein n=1 Tax=Me... 582 e-164 UniRef50_C5CU85 DEAD/DEAH box helicase domain protein n=10 Tax=C... 582 e-164 UniRef50_Q2SZW4 ATP-dependent RNA helicase RhlE n=104 Tax=Proteo... 582 e-164 UniRef50_A9NFK0 ATP-dependent RNA helicase, superfamily II n=1 T... 580 e-164 UniRef50_Q54CE0 Probable ATP-dependent RNA helicase ddx17 n=2 Ta... 580 e-164 UniRef50_Q7NHM7 Gll2508 protein n=1 Tax=Gloeobacter violaceus Re... 580 e-164 UniRef50_Q1ECV0 LOC556764 protein (Fragment) n=21 Tax=Eukaryota ... 580 e-164 UniRef50_A9KIB7 DEAD/DEAH box helicase domain protein n=1 Tax=Cl... 578 e-163 UniRef50_UPI0001C33831 DNA/RNA helicase, superfamily II n=3 Tax=... 577 e-163 UniRef50_P42305 ATP-dependent RNA helicase dbpA n=99 Tax=Firmicu... 577 e-163 UniRef50_D2QGG1 DEAD/DEAH box helicase domain protein n=2 Tax=Ba... 577 e-163 UniRef50_A3FQ59 Putative uncharacterized protein n=1 Tax=Cryptos... 577 e-163 UniRef50_D1INE6 Whole genome shotgun sequence of line PN40024, s... 576 e-163 UniRef50_B7VQT9 ATP-dependent RNA helicase n=15 Tax=Bacteria Rep... 576 e-163 UniRef50_B0SU57 ATP-dependent RNA helicase, DEAD-box family (Dea... 576 e-162 UniRef50_A2QC74 ATP-dependent RNA helicase dbp2 n=35 Tax=Eukaryo... 576 e-162 UniRef50_C4Q0V4 DEAD box ATP-dependent RNA helicase, putative n=... 575 e-162 UniRef50_Q24I45 DEAD/DEAH box helicase family protein n=2 Tax=Te... 575 e-162 UniRef50_C7PD17 DEAD/DEAH box helicase domain protein n=139 Tax=... 575 e-162 UniRef50_B4WCQ8 DEAD/DEAH box helicase domain protein n=1 Tax=Br... 573 e-162 UniRef50_B0SEU1 Superfamily II DNA and RNA helicase n=5 Tax=cell... 573 e-162 UniRef50_Q2BP56 Putative ATP-dependent RNA helicase n=1 Tax=Nept... 572 e-161 UniRef50_D2MPZ3 Putative ATP-dependent RNA helicase RhlE n=1 Tax... 572 e-161 UniRef50_C5PZD1 ATP-dependent RNA helicase n=5 Tax=Bacillales Re... 572 e-161 UniRef50_C8PWG8 Cold-shock DEAD box protein A homolog n=1 Tax=En... 571 e-161 UniRef50_Q5HME0 Probable DEAD-box ATP-dependent RNA helicase SER... 571 e-161 UniRef50_B1CAG5 Putative uncharacterized protein n=1 Tax=Anaerof... 571 e-161 UniRef50_Q6MN50 ATP-dependent RNA helicase n=1 Tax=Bdellovibrio ... 571 e-161 UniRef50_Q5N7W4 DEAD-box ATP-dependent RNA helicase 30 n=3 Tax=O... 570 e-161 UniRef50_A0RP33 Putative ATP-dependent RNA helicase RhlE n=2 Tax... 570 e-161 UniRef50_A7IK90 DEAD/DEAH box helicase domain protein n=36 Tax=A... 570 e-161 UniRef50_A9GRX1 DeaD2 protein n=5 Tax=Bacteria RepID=A9GRX1_SORC5 570 e-161 UniRef50_B7PA03 ATP-dependent helicase (DEAD box), putative n=1 ... 570 e-161 UniRef50_Q3AFI3 ATP-dependent RNA helicase, DEAD box family n=1 ... 569 e-160 UniRef50_C8WFI7 DEAD/DEAH box helicase domain protein n=3 Tax=Zy... 568 e-160 UniRef50_C9RPH4 DEAD/DEAH box helicase domain protein n=1 Tax=Fi... 568 e-160 UniRef50_Q5JKF2 DEAD-box ATP-dependent RNA helicase 40 n=11 Tax=... 568 e-160 UniRef50_Q17W71 ATP-dependent RNA helicase n=19 Tax=Helicobacter... 567 e-160 UniRef50_A6TTG0 DEAD/DEAH box helicase domain protein n=28 Tax=F... 566 e-160 UniRef50_C1D673 RhlE3 n=1 Tax=Laribacter hongkongensis HLHK9 Rep... 566 e-159 UniRef50_Q9SQV1 DEAD-box ATP-dependent RNA helicase 40 n=14 Tax=... 565 e-159 UniRef50_C5TNR4 Dead/deah box helicase n=8 Tax=Neisseriaceae Rep... 565 e-159 UniRef50_C6XMJ7 DEAD/DEAH box helicase domain protein n=23 Tax=B... 564 e-159 UniRef50_B8I5B1 DEAD/DEAH box helicase domain protein n=2 Tax=Cl... 564 e-159 UniRef50_B5EAF1 DEAD/DEAH box helicase domain protein n=3 Tax=De... 564 e-159 UniRef50_UPI00006CD03A P68-like protein, putative n=1 Tax=Tetrah... 564 e-159 UniRef50_B8ILJ8 DEAD/DEAH box helicase domain protein n=10 Tax=A... 563 e-159 UniRef50_B3L9V8 Helicase, putative n=6 Tax=Alveolata RepID=B3L9V... 563 e-159 UniRef50_A9M0D7 ATP-dependent RNA helicase, putative n=21 Tax=Ne... 562 e-158 UniRef50_C4QFR3 DEAD box ATP-dependent RNA helicase, putative n=... 562 e-158 UniRef50_A7K2L3 ATP-dependent RNA helicase n=17 Tax=Vibrionaceae... 561 e-158 UniRef50_C4Q2M5 DEAD box ATP-dependent RNA helicase, putative n=... 560 e-158 UniRef50_C7JBN9 DNA/RNA helicase n=19 Tax=cellular organisms Rep... 560 e-158 UniRef50_B3QTY3 DEAD/DEAH box helicase domain protein n=1 Tax=Ch... 560 e-158 UniRef50_Q0BSI7 ATP-dependent RNA helicase n=54 Tax=Alphaproteob... 559 e-157 UniRef50_O26305 ATP-dependent RNA helicase, eIF-4A family n=1 Ta... 558 e-157 UniRef50_P19109 ATP-dependent RNA helicase p62 n=11 Tax=Eukaryot... 558 e-157 UniRef50_Q30PP0 DEAD/DEAH box helicase-like protein n=11 Tax=Bac... 558 e-157 UniRef50_D2L498 DEAD/DEAH box helicase domain protein n=1 Tax=De... 558 e-157 UniRef50_A8IAJ3 Helicase n=4 Tax=Alphaproteobacteria RepID=A8IAJ... 558 e-157 UniRef50_B7EQA6 cDNA clone:J023079L21, full insert sequence n=5 ... 557 e-157 UniRef50_C6ATS7 DEAD/DEAH box helicase domain protein n=15 Tax=A... 557 e-157 UniRef50_Q4FSS4 Possible ATP-dependent DEAD/DEAH box RNA-helicas... 556 e-157 UniRef50_D0WJ40 Putative ATP-dependent RNA helicase RhlE n=1 Tax... 556 e-157 UniRef50_D1I3Q7 Whole genome shotgun sequence of line PN40024, s... 556 e-156 UniRef50_B8FPB9 DEAD/DEAH box helicase domain protein n=12 Tax=B... 556 e-156 UniRef50_C0ZI64 Putative ATP-dependent RNA helicase n=1 Tax=Brev... 556 e-156 UniRef50_D2QY81 DEAD/DEAH box helicase domain protein n=1 Tax=Pi... 555 e-156 UniRef50_A5UZK3 DEAD/DEAH box helicase domain protein n=8 Tax=Ba... 555 e-156 UniRef50_Q4TVV3 Probable ATP-dependent RNA helicase DDX46 n=18 T... 555 e-156 UniRef50_C4XQY7 ATP-dependent RNA helicase n=7 Tax=Deltaproteoba... 555 e-156 UniRef50_Q3AZR1 DEAD/DEAH box helicase-like n=2 Tax=Synechococcu... 554 e-156 UniRef50_UPI0001C311D7 DEAD/DEAH box helicase domain protein n=1... 554 e-156 UniRef50_O97032 DjVLGB (Fragment) n=1 Tax=Dugesia japonica RepID... 554 e-156 UniRef50_B2S409 ATP-dependent RNA helicase n=3 Tax=Treponema Rep... 553 e-156 UniRef50_A2EVI2 DEAD/DEAH box helicase family protein n=1 Tax=Tr... 553 e-156 UniRef50_UPI000186EE68 DEAD box ATP-dependent RNA helicase, puta... 553 e-156 UniRef50_Q12QV2 DEAD/DEAH box helicase-like protein n=27 Tax=Gam... 552 e-155 UniRef50_C4V8Q7 Putative uncharacterized protein n=1 Tax=Nosema ... 552 e-155 UniRef50_C8WL27 DEAD/DEAH box helicase domain protein n=3 Tax=Eg... 552 e-155 UniRef50_Q1J0S9 DEAD/DEAH box helicase-like protein n=2 Tax=Dein... 551 e-155 UniRef50_C1AE59 ATP-dependent RNA helicase RhlE n=1 Tax=Gemmatim... 551 e-155 UniRef50_D0MZ17 DEAD/DEAH box RNA helicase, putative n=1 Tax=Phy... 551 e-155 UniRef50_C6CYC6 DEAD/DEAH box helicase domain protein n=89 Tax=F... 551 e-155 UniRef50_Q2NB74 DNA and RNA helicase n=7 Tax=Alphaproteobacteria... 551 e-155 UniRef50_B3M5L4 GF23818 n=1 Tax=Drosophila ananassae RepID=B3M5L... 550 e-155 UniRef50_B7QFN5 ATP-dependent RNA helicase, putative n=1 Tax=Ixo... 550 e-155 UniRef50_Q9M2F9 DEAD-box ATP-dependent RNA helicase 52 n=13 Tax=... 550 e-155 UniRef50_Q65XX1 Vasa-and belle-like helicase protein 1, isoform ... 550 e-155 UniRef50_C7MN05 DNA/RNA helicase, superfamily II n=1 Tax=Cryptob... 550 e-155 UniRef50_UPI00016C5336 ATP-dependent RNA helicase n=1 Tax=Gemmat... 550 e-155 UniRef50_B6R5V0 ATP-dependent rna helicase, dead/deah box family... 550 e-155 UniRef50_B9SAJ6 Dead box ATP-dependent RNA helicase, putative n=... 550 e-155 UniRef50_Q2RQT0 DEAD/DEAH box helicase n=59 Tax=root RepID=Q2RQT... 550 e-155 UniRef50_Q0G0P8 Superfamily II DNA and RNA helicase n=1 Tax=Fulv... 550 e-155 UniRef50_A5G1U8 DEAD/DEAH box helicase domain protein n=7 Tax=Al... 550 e-155 UniRef50_B0SYC6 DEAD/DEAH box helicase domain protein n=33 Tax=A... 549 e-154 UniRef50_A6LUG3 DEAD/DEAH box helicase domain protein n=33 Tax=F... 549 e-154 UniRef50_O00571 ATP-dependent RNA helicase DDX3X n=262 Tax=cellu... 549 e-154 UniRef50_Q0K893 ATP-dependent RNA helicase n=129 Tax=Proteobacte... 549 e-154 UniRef50_B6YWR7 DEAD/DEAH box RNA helicase n=3 Tax=Thermococcus ... 549 e-154 UniRef50_Q485D3 ATP-dependent RNA helicase, DEAD box family n=24... 549 e-154 UniRef50_Q1D015 ATP-dependent helicase, DEAD/DEAH-box family n=6... 548 e-154 UniRef50_UPI00016C0D94 ATP-dependent RNA helicase n=1 Tax=Epulop... 548 e-154 UniRef50_Q17KA8 DEAD box ATP-dependent RNA helicase n=4 Tax=Euka... 548 e-154 UniRef50_Q0B215 DEAD/DEAH box helicase domain protein n=8 Tax=Pr... 547 e-154 UniRef50_A8WWC4 C. briggsae CBR-VBH-1 protein n=2 Tax=Caenorhabd... 547 e-154 UniRef50_A3WBD4 DNA and RNA helicase n=1 Tax=Erythrobacter sp. N... 547 e-154 UniRef50_Q86XP3 ATP-dependent RNA helicase DDX42 n=64 Tax=Eukary... 547 e-154 UniRef50_C6C1F3 DEAD/DEAH box helicase domain protein n=2 Tax=De... 547 e-154 UniRef50_D1B384 DEAD/DEAH box helicase domain protein n=1 Tax=Su... 546 e-153 UniRef50_C5KR89 RNA helicase, putative n=3 Tax=Perkinsus marinus... 546 e-153 UniRef50_UPI0000E87E35 putative ATP-dependent RNA helicase prote... 545 e-153 UniRef50_B4MZE1 GK18312 n=1 Tax=Drosophila willistoni RepID=B4MZ... 545 e-153 UniRef50_Q2PZC2 Vasa protein n=16 Tax=Neoptera RepID=Q2PZC2_APIME 545 e-153 UniRef50_Q1AG34 Ded1-like DEAD-box RNA helicase n=3 Tax=Coelomat... 545 e-153 UniRef50_Q3SF48 DEAD/DEAH box helicase n=7 Tax=cellular organism... 545 e-153 UniRef50_B2UL73 DEAD/DEAH box helicase domain protein n=1 Tax=Ak... 545 e-153 UniRef50_B6BTD3 Dead/deah box helicase domain protein n=1 Tax=be... 545 e-153 UniRef50_Q7UJ92 Putative ATP-dependent RNA helicase rhlE n=1 Tax... 545 e-153 UniRef50_D1H3Q8 Whole genome shotgun sequence of line PN40024, s... 544 e-153 UniRef50_B5IG60 DEAD/DEAH box helicase domain protein n=2 Tax=Ac... 544 e-153 UniRef50_B9N3Z4 Predicted protein n=9 Tax=Spermatophyta RepID=B9... 544 e-153 UniRef50_D2V713 ATP-dependent RNA helicase n=1 Tax=Naegleria gru... 544 e-153 UniRef50_O97031 DjVLGA n=1 Tax=Dugesia japonica RepID=O97031_DUGJA 544 e-153 UniRef50_B7P029 Vasa n=9 Tax=Coelomata RepID=B7P029_9BIVA 544 e-153 UniRef50_P24346 Putative ATP-dependent RNA helicase an3 n=63 Tax... 543 e-153 UniRef50_Q15T34 DEAD/DEAH box helicase-like n=1 Tax=Pseudoaltero... 543 e-153 UniRef50_B9SM44 Dead box ATP-dependent RNA helicase, putative n=... 543 e-153 UniRef50_C7N178 DNA/RNA helicase, superfamily II n=1 Tax=Slackia... 543 e-152 UniRef50_C7LND0 DEAD/DEAH box helicase domain protein n=1 Tax=De... 542 e-152 UniRef50_Q9VHP0 ATP-dependent RNA helicase bel n=13 Tax=Eukaryot... 541 e-152 UniRef50_B7IA63 DEAD/DEAH box helicase n=17 Tax=Acinetobacter Re... 541 e-152 UniRef50_Q2BDP3 ATP-dependent RNA helicase n=2 Tax=Bacillus RepI... 541 e-152 Sequences not found previously or not previously below threshold: >UniRef50_P0A9P7 Cold-shock DEAD box protein A n=201 Tax=Bacteria RepID=DEAD_ECOL6 Length = 629 Score = 798 bits (2061), Expect = 0.0, Method: Composition-based stats. Identities = 629/629 (100%), Positives = 629/629 (100%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF Sbjct: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 Query: 61 SLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 SLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR Sbjct: 61 SLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG Sbjct: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL Sbjct: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI Sbjct: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 Query: 361 ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELD 420 ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELD Sbjct: 361 ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELD 420 Query: 421 LETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRER 480 LETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRER Sbjct: 421 LETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRER 480 Query: 481 RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGE 540 RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGE Sbjct: 481 RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGE 540 Query: 541 VLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERREGGRGD 600 VLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERREGGRGD Sbjct: 541 VLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERREGGRGD 600 Query: 601 GRRFSGERREGRAPRRDDSTGRRRFGGDA 629 GRRFSGERREGRAPRRDDSTGRRRFGGDA Sbjct: 601 GRRFSGERREGRAPRRDDSTGRRRFGGDA 629 >UniRef50_A2SQE1 DEAD/DEAH box helicase domain protein n=17 Tax=cellular organisms RepID=A2SQE1_METLZ Length = 656 Score = 721 bits (1862), Expect = 0.0, Method: Composition-based stats. Identities = 236/644 (36%), Positives = 352/644 (54%), Gaps = 32/644 (4%) Query: 3 EFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSL 62 E TFA+ + +L+A+ D+G+E+P+PIQA IP +L+G+DV G AQTG+GKTAAF + Sbjct: 2 EETKTFAEFAISEELLQAIGDMGFEEPTPIQAMAIPQILDGKDVTGQAQTGTGKTAAFGI 61 Query: 63 PLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 P+++ LDP+ K Q LVL+PTRELA+Q AE + K+ +G+NVV +YGGQ + QLRAL Sbjct: 62 PIIERLDPDNKNVQALVLSPTRELAIQTAEEFSRLMKYKKGLNVVPIYGGQPIERQLRAL 121 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 + Q+V+GTPGR++DH+KRGTL L ++ +LDEAD+ML MGF ED+E I P+ Q Sbjct: 122 KGTVQVVIGTPGRVIDHIKRGTLHLDSVTMFILDEADQMLDMGFREDIEDIFRDTPKDRQ 181 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 T LFSATMP+ I ITRRF ++PQ V+I T P I Q+Y V K EAL R L+ Sbjct: 182 TILFSATMPQPILDITRRFQRDPQFVKITRKELTVPQIEQTYIEVRERDKLEALCRTLDM 241 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 + + A++F TK ++ ++ GY AL+GDM Q R++ + R + G +D+LIAT Sbjct: 242 NNPELALVFCNTKRTVDDLMSRMQARGYFVEALHGDMKQQQRDRVMARFRSGSIDVLIAT 301 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 DVAARG+DV+ + +V NYD+P D E YVHRIGRT RAGR G+++ FV RE LR+I+R Sbjct: 302 DVAARGIDVDDVDIVFNYDVPQDVEYYVHRIGRTARAGRTGKSVTFVAPREIYKLRDIQR 361 Query: 363 TMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLE 422 K+ I + LP + + + + + F KV+ + + +L+ Y L+ ++ T + + Sbjct: 362 YAKIQIAKTPLPTLDDVAEMKQQIFLDKVRDIMAAGNLELYLPLVEQLLETETDVDSEST 421 Query: 423 TLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRD 482 + ++ A + + + + + + G + P Sbjct: 422 SEITSIQVAAALLKMHLDSGKNAAQSEEIKPLQPSPSSSETFTPGTVENSGAEPG----- 476 Query: 483 VGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVL 542 M +RI +G++ + + IVGA A E DI IG I L+ ++S +++P V Sbjct: 477 ---MVRFRISLGKNQQIRPKDIVGAFAGECDIPGSSIGRIDLYNNYSYVDVPLEHANLVA 533 Query: 543 QHFTRTRILNKPMNMQLLGDAQP-----------------HTGGERRGGGRGFGGERREG 585 + I + + + + P + G R G GERR Sbjct: 534 EVMGSKTIRGQELEISIAAPRTPEEEERERDRDRSGDRRGGSSGYRSGDRNSGSGERRSY 593 Query: 586 GRNFSGERREGGRGDGRRFSGERREGRAPRR----DDSTGRRRF 625 N G RG SG+R G RR S+ RR F Sbjct: 594 NNNRGS---YGSRGGSNYRSGDRSSGSGERRSYGNSGSSDRRSF 634 >UniRef50_B4SPP3 DEAD/DEAH box helicase domain protein n=16 Tax=cellular organisms RepID=B4SPP3_STRM5 Length = 646 Score = 704 bits (1818), Expect = 0.0, Method: Composition-based stats. Identities = 291/638 (45%), Positives = 377/638 (59%), Gaps = 18/638 (2%) Query: 2 AEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFS 61 ++ + FA LGL +++A+ +GYE PSPIQA IP +L GRDVLG AQTG+GKTAAF+ Sbjct: 5 SQAQLQFAQLGLSESVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAFA 64 Query: 62 LPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 LP+L N+D + PQ LVLAPTRELA+QVAEA +S + G V+ +YGGQ Y QL A Sbjct: 65 LPVLSNIDLQQIKPQALVLAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQQLSA 124 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 LR+G IVVGTPGR++DHL R TLDLS+L LVLDEADEMLRMGFI+DVE ++ ++P Sbjct: 125 LRRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPAKR 184 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 Q ALFSATMP IRRI + ++++P EV I + TT +I Q YW V GM K +AL R LE Sbjct: 185 QVALFSATMPPQIRRIAQTYLQDPVEVTIAAKTTTSANIRQRYWWVSGMHKLDALTRILE 244 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 E FDA IIF RTK T E+A L+ G +AA+NGDM QA RE+T+ LK+G+LDIL+A Sbjct: 245 VEPFDAMIIFARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKLDILVA 304 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 TDVAARGLDVERIS V+NYDIP D+ESYVHRIGRTGRAGR+G A+LF RE+ +LR IE Sbjct: 305 TDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFATPREKGMLRQIE 364 Query: 362 RTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDL 421 R + I E++LP+ E + R+ KF +++ + L LD YR LL + + +++ Sbjct: 365 RATRQPIEEMQLPSVEAVNDNRINKFTSRITETLGQGGLDFYRQLLERFETEQNVPAIEV 424 Query: 422 ET----------------LAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRND 465 A + + E R +RGPR + Sbjct: 425 AAALAKMMQGDTPFLLQPPVRAPREERAPRERFERTERPERGDRNERGPRFERGPRRDDA 484 Query: 466 RGPRGDREDRPRRER-RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKL 524 G R R R M+ YRI VG GV+ +IVGAIANE + SR+IG I + Sbjct: 485 EGGFEQRPRRDVPPRGAPEQGMETYRISVGHQHGVKPANIVGAIANEAGLESRFIGRIDI 544 Query: 525 FASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERRE 584 S ++LP MP +VL H + + + + M+ L + R F Sbjct: 545 HDDFSLLDLPAQMPSDVLTHLQKVWVSGQQLQMRPLAAGEEINPAPRPF-KPRFDKRGPG 603 Query: 585 GGRNFSGERREGGRGDGRRFSGERREGRAPRRDDSTGR 622 G G GD G R+ R PRRD R Sbjct: 604 GPGGPRRSGPGGPGGDRGGDRGGDRDSRPPRRDGFKPR 641 >UniRef50_A6T3R2 ATP-dependent RNA helicase n=86 Tax=Bacteria RepID=A6T3R2_JANMA Length = 778 Score = 702 bits (1812), Expect = 0.0, Method: Composition-based stats. Identities = 282/645 (43%), Positives = 393/645 (60%), Gaps = 21/645 (3%) Query: 1 MAEFE-TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAA 59 M+E FADL L P+L L +LGYE PSPIQA IP LLN RDVLG AQTG+GKTA+ Sbjct: 1 MSEPSFPLFADLKLSEPLLRVLQELGYESPSPIQAATIPLLLNNRDVLGQAQTGTGKTAS 60 Query: 60 FSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119 F+LP+L +D + PQ LVLAPTRELA+QVAEA ++ ++ G +V+ +YGGQ Y QL Sbjct: 61 FALPILARIDIKQTTPQALVLAPTRELAIQVAEAFQRYATYIPGFHVLPIYGGQSYGAQL 120 Query: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179 ALR+G +VVGTPGR++DHL++G+LDLS++ +VLDEADEMLRMGFI+DVETI+ + PE Sbjct: 121 SALRRGVHVVVGTPGRVIDHLEKGSLDLSRIKTMVLDEADEMLRMGFIDDVETILQKTPE 180 Query: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239 QTALFSATMP AI+RI ++++P + + + T +I Q YW V GM+K +AL R Sbjct: 181 SRQTALFSATMPSAIKRIATTYLRDPDLITVAAKTGTADNIRQRYWLVSGMQKLDALTRI 240 Query: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299 LEAE+FD IIF RTK T E+A L+ G+++AA+NGD+ Q RE+T+++LKDG++DIL Sbjct: 241 LEAENFDGMIIFARTKLGTEELASKLQARGFSAAAINGDIQQQQRERTIQQLKDGKIDIL 300 Query: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359 +ATDVAARGLDVERIS V+NYD+P D ESY HRIGRTGRAGR+G A+LF+ RER LL+ Sbjct: 301 VATDVAARGLDVERISHVINYDVPHDPESYTHRIGRTGRAGRSGEAILFIAPRERNLLKA 360 Query: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEL 419 IER + I +ELP+ E + R+ +F ++ + + + L+ + +L+ + + Sbjct: 361 IERATRQPISVLELPSVEAVNDVRISRFKEQIAETIAAGGLEVFHSLIEDYEREHN---V 417 Query: 420 DLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPR----------------DR 463 +AAAL K+A+G+ L++ +R + D+ G R DR Sbjct: 418 PAVEIAAALAKLARGDVPLLLDKKNEVRERSWSDDKPVSGGRFERAERFERGDRPERGDR 477 Query: 464 NDRGPRGDREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIK 523 +R R + R R MQ +RIEVG GV+ +IVGAIANE + S+YIG I+ Sbjct: 478 FERSERPAAPRKERIPRAPDAGMQSFRIEVGHAHGVKPGNIVGAIANEASLDSKYIGRIE 537 Query: 524 LFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERR 583 ++ +ST++LP+ + E H + + +N+ GDA R F Sbjct: 538 IYDDYSTLDLPENLSPEQFNHLKTVWVAGQQLNISREGDAP-AAAPARSANKPAFEKAVA 596 Query: 584 EGGRNFSGERREGGRGDGRRFSGERREGRAPRRDDSTGRRRFGGD 628 + R+ + R + R R G Sbjct: 597 SEAAPAAKPARKEVKERSERAAAPAAPVEVAAAPAKKERERKGSG 641 Score = 97.1 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 49/214 (22%), Positives = 84/214 (39%), Gaps = 6/214 (2%) Query: 406 LLSKIQPTAEGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRND 465 + + + + A + K A + A ++E ++R +R Sbjct: 564 VAGQQLNISREGDAPAAAPARSANKPAFEKAVASEAAPAAKPARKEVKERSERAAAPAAP 623 Query: 466 RGPRGDREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLF 525 + R + DM+ YR+EVG GV+ +IVGAIANE + ++YIG I++F Sbjct: 624 VEVAAAPAKKERERKGSGVDMEPYRVEVGHAHGVKPANIVGAIANEAGLEAKYIGRIEIF 683 Query: 526 ASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRG---GGRGFGGER 582 +S ++LP GMP EV I + + A + GG+R Sbjct: 684 DDYSLLDLPAGMPTEVFDQLKSVAIGTHKLRLSRSSVAPAPEKTSGKKITLSAPNKGGDR 743 Query: 583 REGGRNFSGE---RREGGRGDGRRFSGERREGRA 613 R + S + +R G G + + + R Sbjct: 744 RVAEKGRSSKAPSKRVGTMGGRPAEAAKPKSHRK 777 >UniRef50_Q7UG20 ATP-dependent RNA helicase n=2 Tax=Bacteria RepID=Q7UG20_RHOBA Length = 931 Score = 701 bits (1810), Expect = 0.0, Method: Composition-based stats. Identities = 262/623 (42%), Positives = 377/623 (60%), Gaps = 5/623 (0%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F DL L+A + +A+ GY+KP+PIQAE IP++L+GRDVL +QTG+GKTAAF+LP+L Sbjct: 306 FRDLDLRAEVQKAVAASGYDKPTPIQAEIIPYMLDGRDVLAQSQTGTGKTAAFALPILSR 365 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 +D + PQ+LVLAPTRELA+QVA + T + + G V A+YGGQ Y+ QL+ LR+G Q Sbjct: 366 VDVRSRRPQVLVLAPTRELAIQVARSFTKYGADLSGFQVAAIYGGQDYEPQLKQLRRGVQ 425 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 +VVGTPGR++DH+KRGTLDL L LVLDEADEML MGF+EDV+ ++ + PEG Q ALFS Sbjct: 426 VVVGTPGRVIDHVKRGTLDLGSLDCLVLDEADEMLNMGFLEDVQFVLEKSPEGRQVALFS 485 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 AT+P+ IR+I ++ +P + I+S T + Q V K +AL R LE E+ D Sbjct: 486 ATLPKPIRKIADEYLNDPARITIKSKTITAASVRQRALFVSPRDKIDALTRILEVEETDG 545 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 I+F +TK++TL VAE L + G+++ ALNGDM Q +RE+T+++LK G+LD+L+ATDVAAR Sbjct: 546 VIVFTKTKDSTLSVAEKLSQQGFSAIALNGDMPQKVRERTIDQLKRGQLDVLVATDVAAR 605 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 GLDV RIS V N+D+P DSESYVHRIGRTGRAGR+G+A++F+ N +RR LR IE T K Sbjct: 606 GLDVPRISHVFNFDLPHDSESYVHRIGRTGRAGRSGQAIIFLTNAQRRQLRFIENTTKQP 665 Query: 368 IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAA 427 I +++P + + R+ +F ++ DL Y+ ++++ + + A Sbjct: 666 IEIIDIPTVADINEARVRRFKQRITDVSADQDLTVYKDMIAQYAEESGKPMEMIAAALAE 725 Query: 428 LLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDV---- 483 + + + P R R+ D + +DRPRR + Sbjct: 726 MSQNGRPFLLKERPKKQRERSDRDNSRGRDSFDSNDRSGNRGSFGDDRPRRPKGRPLTPV 785 Query: 484 -GDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVL 542 M YR++VG DGV+ +IVGA+ANE I YIG I + SH+ I+LP+GMP ++ Sbjct: 786 KEGMTRYRLDVGWQDGVKPGNIVGAVANEAGIDGEYIGPINIRDSHTLIDLPEGMPSDIY 845 Query: 543 QHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERREGGRGDGR 602 Q +T + K +N++ GD G+ G R+ G + G R Sbjct: 846 QTLRKTWVAGKRLNLEEAGDVVDDFEGDGGRSNFRKEGFRKGKFSGNGGSGGKNFSGGKR 905 Query: 603 RFSGERREGRAPRRDDSTGRRRF 625 F + R + G+++F Sbjct: 906 SFGNKSRNNGSTAPTAKRGKKKF 928 >UniRef50_Q1MY97 DEAD/DEAH box helicase-like protein n=1 Tax=Bermanella marisrubri RepID=Q1MY97_9GAMM Length = 614 Score = 701 bits (1810), Expect = 0.0, Method: Composition-based stats. Identities = 297/625 (47%), Positives = 413/625 (66%), Gaps = 18/625 (2%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 M+E T FA LGL +L A+ + GYE+PSPIQ + IPHLL G+DVLG+AQTG+GKTAAF Sbjct: 1 MSESSTGFASLGLPFNLLRAIEEQGYEQPSPIQEQSIPHLLEGKDVLGLAQTGTGKTAAF 60 Query: 61 SLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 +LPLL E++ PQ+LVLAPTRELA QVA A+ +SKH V V ++YGG + Q R Sbjct: 61 TLPLLARTQNEVREPQVLVLAPTRELAQQVAMAVESYSKHESNVKVASIYGGSDFGSQFR 120 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 AL+QGPQ VVGTPGR++DH++RGTL L + +VLDEADEMLRMGFI+DV+ ++ Q+PE Sbjct: 121 ALKQGPQWVVGTPGRVMDHIRRGTLKLEGIRAVVLDEADEMLRMGFIDDVDWVLDQVPEK 180 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 Q ALFSATMP+ I+ + + ++EP E+RI+S T I Q YW V G+ KN+AL+R Sbjct: 181 RQIALFSATMPKQIKAVAEKHLREPTEIRIKSKTATNESIEQKYWLVKGVDKNQALLRIC 240 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 E +FDA ++FVRTK AT EVA+ + +G ALNGD+ QA RE+ ++RLK G++D+L+ Sbjct: 241 ETSEFDAMMVFVRTKQATEEVADYMRSHGLRCEALNGDVAQAQRERAVDRLKKGQVDMLV 300 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATDVAARGLDVERIS VVNYDIP D+ESYVHRIGRTGRAGR+G A+LFV RERR+L I Sbjct: 301 ATDVAARGLDVERISHVVNYDIPYDAESYVHRIGRTGRAGRSGEAILFVRPRERRMLSTI 360 Query: 361 ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELD 420 ER + I ++ELP A+ + +R ++F + + +E D++ ++ + S+I AE LD Sbjct: 361 ERVTRKKIQQIELPTAKEVNAKRRDQFKVRALEHIEGRDIEIFKKIASEIL--AEQPALD 418 Query: 421 LETLAAALLKMAQGERTLIVPP-DAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRE 479 LAAA +M+QG + L + + +P+ + +R +R R N + Sbjct: 419 PIELAAAFAQMSQGNKPLFMDESEPRFKPETDRGERGERKERRNNSGREERKPIELEAMP 478 Query: 480 RRDVGD--MQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM 537 +D D M+ YR+ VG DGV+ +IVGAIANE DI S++IG+I+++ + ++++LP GM Sbjct: 479 LKDFPDVEMRRYRLAVGYKDGVKPGNIVGAIANEADIESKFIGHIEIYDTFASVDLPSGM 538 Query: 538 PGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERREGG 597 P E L H + R+ +P+N++ L + RG G G R G N G++ +G Sbjct: 539 PEETLTHLKKARVCGRPINIEPLKN---------RGAGGGQKPRRNAKGGNK-GKKPQGE 588 Query: 598 RGDGRRFSGERREGRAPRRDDSTGR 622 RG + G + G+ R D R Sbjct: 589 RGQNK---GGAKSGKPKRTGDRKPR 610 >UniRef50_C8WWM6 DEAD/DEAH box helicase domain protein n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WWM6_ALIAD Length = 541 Score = 700 bits (1807), Expect = 0.0, Method: Composition-based stats. Identities = 225/566 (39%), Positives = 331/566 (58%), Gaps = 37/566 (6%) Query: 2 AEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFS 61 E ++F GL +L+A++D+G+E+PSPIQA CIP +L GRDV+G AQTG+GKTAAF Sbjct: 13 VESMSSFESFGLNRRVLQAIHDMGFEEPSPIQAACIPVVLEGRDVIGQAQTGTGKTAAFG 72 Query: 62 LPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 +PL++ + E + Q +VL PTRELA+QVA + +K+ R V V +YGGQ Q+RA Sbjct: 73 IPLVERVSTEPR-VQAIVLTPTRELAIQVAGEIRKIAKYKR-VRSVPIYGGQSIVHQIRA 130 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 L+QG QIV+GTPGR+LDH+ RGTL LS + +VLDEADEML MGFI+D+E I+ + P Sbjct: 131 LKQGVQIVIGTPGRVLDHIHRGTLSLSDVRMVVLDEADEMLDMGFIDDIEAILRETPSDR 190 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 QT LFSAT P ++R+ R+M++PQ + + T P I Q + V K ++L R ++ Sbjct: 191 QTMLFSATFPNEVKRLALRYMRDPQHITVNRGEVTVPQIDQVCYKVLERNKLDSLCRIVD 250 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 +ED IIF RTK ++ EAL GY + L+GD++QA R++ + + + +++L+A Sbjct: 251 SEDIQLGIIFCRTKRGVDDLVEALLARGYLADGLHGDLSQAQRDRVMRKFRKNEIELLVA 310 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 TDVAARGLDV+ ++ V+NYD+P D ESYVHRIGRTGRAG+ G A+ V RE +LL+ IE Sbjct: 311 TDVAARGLDVDDVTHVINYDVPQDPESYVHRIGRTGRAGKRGLAITLVTPREYKLLKQIE 370 Query: 362 RTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDL 421 R +K I E+P+ E + +R+ E + +K+ + L YRA+LS + +E D Sbjct: 371 REIKQKITVREVPSLEDVAERQAEMWRSKIVDVIREGGLAPYRAILSGLV-----DEHDP 425 Query: 422 ETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERR 481 +A+ALLK+A G R +D GD RP Sbjct: 426 IDIASALLKLA----------------------SSGDGNRTESDEYDFGDTGARPG---- 459 Query: 482 DVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEV 541 M + + VGR + + V AI+ E + +G I +F + IE+ + V Sbjct: 460 ----MVRFFVNVGRTSRMSPQDFVRAISEEAGVPGDAVGRIDMFEKFTFIEVEEESAPFV 515 Query: 542 LQHFTRTRILNKPMNMQLLGDAQPHT 567 + ++RI +N++ Sbjct: 516 YEALRQSRINGTRVNLEPAKPRSSRR 541 >UniRef50_Q3IJ60 ATP-dependent RNA helicase, cold shock protein A n=3 Tax=Alteromonadales RepID=Q3IJ60_PSEHT Length = 616 Score = 699 bits (1805), Expect = 0.0, Method: Composition-based stats. Identities = 317/625 (50%), Positives = 423/625 (67%), Gaps = 28/625 (4%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 M+E TF L L IL+A+ +LGY+ PS IQA+CIP LL +DVLG+AQTG+GKTAAF Sbjct: 1 MSEP-VTFESLNLSPAILKAVEELGYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAF 59 Query: 61 SLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 +LPLL N+DP +K PQILVL PTRELA+QVAEA ++KH+RG+ V+ALYGGQ Y +QL Sbjct: 60 ALPLLNNIDPSVKQPQILVLTPTRELAIQVAEAFEQYAKHVRGIEVLALYGGQSYSIQLS 119 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 ALR+G Q++V TPGRL+DH+ RGT+ L LVLDEADEMLRMGFI+DVE+IM + P Sbjct: 120 ALRRGAQVIVATPGRLIDHINRGTIKFDALQALVLDEADEMLRMGFIDDVESIMEKTPRE 179 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 QT LFSATMP+ I+ I+ ++M P++V I + +T + Q +W + KN+A+VRFL Sbjct: 180 KQTCLFSATMPKQIQNISSKYMNNPEQVHISARNSTVSSVEQVFWNAS-IHKNKAIVRFL 238 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 EAE ++ AI+FVRT+N T+++AE LER G+++A LNGDMNQ RE+T+ERLK G L+++I Sbjct: 239 EAEQYEGAIVFVRTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVERLKSGMLNVVI 298 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATDVAARGLDV+R+SLV+NYDIP DSE+YVHRIGRTGRAGR G+A+LFV++ ER LL+NI Sbjct: 299 ATDVAARGLDVDRLSLVINYDIPQDSEAYVHRIGRTGRAGRTGKAILFVKHNERYLLKNI 358 Query: 361 ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELD 420 R I +VELP A+++ ++R+E AK+ LE+ D+ + + + + EL Sbjct: 359 IRHTNSDIAQVELPTAKIVEEKRIEALQAKLTLALENKDITFFNEVAANMAQKL---ELS 415 Query: 421 LETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRN------------DRGP 468 E LA ALL +AQ + + V RE +R+DR PR + +RG Sbjct: 416 AEDLAGALLCLAQQQSPIKVEEVK--IQPRERNERNDRNPRSNDRGDRGRRNERGGERGG 473 Query: 469 RGDREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASH 528 R RD G M YRIEVGR+ GV+V++IVGAIANE DISS++IG+I+L +H Sbjct: 474 ERAERKPRERNSRDAGPMDTYRIEVGREHGVQVKNIVGAIANEADISSKFIGDIRLHDNH 533 Query: 529 STIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRN 588 ST++LPK MP +VL HF + I +PM + + D P RG ER GG Sbjct: 534 STVQLPKNMPKDVLDHFQKVFICKRPMGLTITADQGPAEP-------RGERSERPAGGEK 586 Query: 589 FSGERREGGRGDGRRFSGERREGRA 613 S + + RGD R G R+E R Sbjct: 587 RSFNKDDSARGDKRS--GPRKERRP 609 >UniRef50_Q5NZY2 ATP-dependent RNA helicase DeaD n=12 Tax=Bacteria RepID=Q5NZY2_AZOSE Length = 658 Score = 699 bits (1804), Expect = 0.0, Method: Composition-based stats. Identities = 306/625 (48%), Positives = 404/625 (64%), Gaps = 10/625 (1%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 M +FA L L+AP+L+AL+++GYE PSPIQA CIPHLL G D+LG AQTG+GKTAAF Sbjct: 39 MTSPIESFAQLDLRAPLLDALSEIGYETPSPIQAICIPHLLAGHDLLGEAQTGTGKTAAF 98 Query: 61 SLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 +LPLL LD +K PQ+LVLAPTRELA+QVAEA ++K++ G +V+ +YGGQ VQLR Sbjct: 99 ALPLLDRLDLAVKNPQVLVLAPTRELAIQVAEAFQRYAKNLPGFHVLPVYGGQSMVVQLR 158 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 L +G ++VGTPGR++DH++R +L+L L+ LVLDEADEMLRMGFI+DVE I+ P Sbjct: 159 QLARGAHVIVGTPGRVMDHIERKSLNLDSLTTLVLDEADEMLRMGFIDDVEWILQHTPAE 218 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 QTALFSATMP+AIRR+ R+++EP+EV+I++S TT Q Y + K +AL R L Sbjct: 219 RQTALFSATMPDAIRRVAHRYLREPREVKIKASTTTVSTTRQRYCQISVAHKLDALTRIL 278 Query: 241 E-AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299 E EDFDAAIIFVRTK AT+E+A+ LE GY++AALNGDM Q LRE+ +E+LK G+LDI+ Sbjct: 279 EVEEDFDAAIIFVRTKTATVELADKLEARGYSAAALNGDMTQQLRERVIEQLKGGQLDIV 338 Query: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359 +ATDVAARGLDV RIS V+NYDIP D+E+YVHRIGRTGRAGR G A+LFV RE R+L+ Sbjct: 339 VATDVAARGLDVSRISHVINYDIPYDTEAYVHRIGRTGRAGRTGSAILFVAPREMRMLKV 398 Query: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEL 419 IER + I ++LP+ E + +R+ F +V LES DL +R +++ ++ T E E Sbjct: 399 IERATRQPIEALQLPSREAVADKRVAAFRQQVATVLESEDLAFFRDVVAGMESTHEAELH 458 Query: 420 DLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRE 479 D +AAAL +AQ ER L +P R R + G E R Sbjct: 459 D---IAAALAFLAQRERPLQLPESKGPDIARLPEPRREPGAERAPRENRDKILERRREFS 515 Query: 480 RRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPG 539 G++Q YRIEVGR+ + IVGAIANE I SRYIG I L+ +ST+ELP +P Sbjct: 516 E---GNLQRYRIEVGRNQQATPKDIVGAIANEAGIESRYIGQINLYEDYSTVELPSALPH 572 Query: 540 EVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERREGGRG 599 +VL R R+ +N++ L + R G G + + GR Sbjct: 573 DVLDILRRVRVRQHQLNIRPLDAEEAKRDAARVRPGAPRPGAAPRHAAHPGSKPAHPGRV 632 Query: 600 DGRRFSGERREGRAPRRDDSTGRRR 624 R FS E+ R P G+++ Sbjct: 633 GPRSFSSEK---RTPSPGFKPGKKK 654 >UniRef50_B1VFV5 ATP-dependent RNA helicase n=35 Tax=cellular organisms RepID=B1VFV5_CORU7 Length = 778 Score = 697 bits (1800), Expect = 0.0, Method: Composition-based stats. Identities = 278/566 (49%), Positives = 377/566 (66%), Gaps = 6/566 (1%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F DLGL + +A+ +G+ KPSPIQ + IP L+ G DV+G+AQTG+GKTAAF+LP+L Sbjct: 133 FGDLGLSPEVFDAVRAVGFTKPSPIQEQTIPLLMAGEDVVGLAQTGTGKTAAFALPILSR 192 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 L+ + + PQ LVLAPTRELA+QVAE+ DF++ M GVN++ +YGGQ Y QL LR+G Sbjct: 193 LNLKSRKPQALVLAPTRELALQVAESFEDFAEKMGGVNILPIYGGQPYGAQLSGLRRGAH 252 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 +VVGTPGR++DHL++G+LD+S+L +VLDEADEML MGF EDVE I+ PE Q ALFS Sbjct: 253 VVVGTPGRVIDHLQKGSLDISELRFMVLDEADEMLNMGFQEDVERILEDTPEDKQVALFS 312 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 ATMP AIR +++R++ PQEV ++S+ T +I Q Y V K +AL R LE DFDA Sbjct: 313 ATMPSAIRHLSKRYLNSPQEVTVKSTQRTAENIEQDYLIVHHREKLDALTRILEVTDFDA 372 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 I+FVRTKN T E+AE L GY +AA+NGD+ QA RE+T+++LKDGRLDIL+ATDVAAR Sbjct: 373 MIMFVRTKNDTEELAERLRARGYEAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAAR 432 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 GLDVERI+ V NYDIP D+ESYVHRIGRTGRAGR+GRA+LFV RERR+L++IER K Sbjct: 433 GLDVERITHVFNYDIPRDTESYVHRIGRTGRAGRSGRAVLFVTPRERRMLKSIERATKSR 492 Query: 368 IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAA 427 + E+ELP+ + + + R KF ++ + LE + +R L++ AE + LE +AAA Sbjct: 493 LNEIELPSVDQVNEARKAKFNRELTKNLEDPQVSVFRDLVTTY---AEANGVTLEDIAAA 549 Query: 428 LLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGD---REDRPRRERRDVG 484 L AQG ++ KR DR R + + PR R+ Sbjct: 550 LAAGAQGGEKFLMEEAPRREHKRRSDDRYGDADRRGGGAYRSFEERFNKPAPRFTDRNGN 609 Query: 485 DMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQH 544 +M++YR+ VG V IVGA+ANEG ++SR G I +F+ HS +ELP +P +V + Sbjct: 610 EMEVYRLSVGHRQRVRPGAIVGALANEGGLNSRDFGRISIFSEHSLVELPADLPKQVFEA 669 Query: 545 FTRTRILNKPMNMQLLGDAQPHTGGE 570 +TR+ + +N++ A G Sbjct: 670 LDQTRVSGQLINIEPDPGAPKGRPGS 695 >UniRef50_C4LJP9 ATP-dependent RNA helicase n=15 Tax=Bacteria RepID=C4LJP9_CORK4 Length = 823 Score = 695 bits (1794), Expect = 0.0, Method: Composition-based stats. Identities = 286/575 (49%), Positives = 379/575 (65%), Gaps = 7/575 (1%) Query: 19 EALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQIL 78 A+ +G+E PSPIQA IP L GRDV+G+AQTG+GKTAAF+LP+L LD K PQ L Sbjct: 167 RAVKKVGFETPSPIQAATIPILAQGRDVVGLAQTGTGKTAAFALPILSRLDRSQKKPQAL 226 Query: 79 VLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLD 138 VL+PTRELA+QVA+A +F+ H+ GV+V+ +YGGQ Y +QL LR+G IVVGTPGR++D Sbjct: 227 VLSPTRELALQVADAFQEFADHLGGVHVLPIYGGQSYGIQLSGLRRGAHIVVGTPGRVID 286 Query: 139 HLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRIT 198 HL+RG+LDLS+L LVLDEADEML MGF EDVE I+A PE QTALFSATMP +IRR++ Sbjct: 287 HLERGSLDLSELKYLVLDEADEMLNMGFQEDVERILADTPEHKQTALFSATMPASIRRLS 346 Query: 199 RRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNAT 258 ++++++P+EV I+S T +I Q Y V K +AL R LE +FDA I+F RTK T Sbjct: 347 KQYLEDPREVTIKSQQRTADNIHQQYLLVNHHYKLDALTRILEVTEFDAMIMFARTKQNT 406 Query: 259 LEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVV 318 E+AE L G+++AA+NGDM Q RE+T+++L+DGRLDIL+ATDVAARGLDVERIS VV Sbjct: 407 EELAEKLRARGFSAAAINGDMAQNQRERTVDQLRDGRLDILVATDVAARGLDVERISHVV 466 Query: 319 NYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAEL 378 NYDIP D+ESYVHRIGRTGRAGR+G A+LFV RERRLLR+IER K +I E++LP + Sbjct: 467 NYDIPHDTESYVHRIGRTGRAGRSGEAILFVTPRERRLLRSIERATKSSIEEMQLPTVDE 526 Query: 379 LGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAALLKMAQGERTL 438 + + R KFA + + L +D +R L++ AE E L +AAAL +Q Sbjct: 527 VNETRKAKFAQSITESLADPQVDLFRGLINSY---AEEHETPLADIAAALATQSQSGDEF 583 Query: 439 IVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDR--PRRERRDVGDMQLYRIEVGRD 496 ++ D R R R R R+ + R + PR R +M +Y+I VG+ Sbjct: 584 LLKEDTIRRNDRRNDRRGRRNDREPDTRSLNERFSGKEPPRFTDRTGKEMAVYKIAVGKR 643 Query: 497 DGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMN 556 V IVGAIANEG ++SR G I +F+ HS +ELP +P EV + TR+ + + Sbjct: 644 QQVRPGAIVGAIANEGGLNSRDFGKISIFSEHSLVELPADLPMEVFEALEDTRVSGQLIK 703 Query: 557 MQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSG 591 ++ A G + + G+RR G N G Sbjct: 704 IEPDPGAPAGRPGAHKRDRQS--GDRRGGRFNDRG 736 >UniRef50_C6VX00 DEAD/DEAH box helicase domain protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VX00_DYAFD Length = 590 Score = 694 bits (1793), Expect = 0.0, Method: Composition-based stats. Identities = 224/588 (38%), Positives = 328/588 (55%), Gaps = 28/588 (4%) Query: 2 AEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFS 61 E TF +LGL IL+AL ++G+EKPSPIQA+ IP +L G DV+G AQTG+GKTAAF Sbjct: 3 TETFQTFEELGLNENILKALQEMGFEKPSPIQAQGIPAVLQGSDVIGQAQTGTGKTAAFG 62 Query: 62 LPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 +P+L+ +D A Q L+L PTRELAVQV+E + SK MRGV + A+YGG D Q+R+ Sbjct: 63 IPVLERIDTSSNAVQALILCPTRELAVQVSEELGRLSKFMRGVRIEAIYGGDSIDRQIRS 122 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 L++G IVVGTPGR++DH++R TL ++ +VLDEADEML MGF ED+E+I+A +PE Sbjct: 123 LKKGVHIVVGTPGRVMDHMERRTLKFDEVRMMVLDEADEMLDMGFREDIESILADMPEDR 182 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 QT LFSATM + I IT+RF+ +P +++ + T +I Q Y+ V K E + R ++ Sbjct: 183 QTILFSATMSKPIMSITKRFLNDPTLIKVVRNELTNQNIEQVYFEVKPQAKVEVMTRLID 242 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 + ++F TK E+ E L+ GY S ++GD+ Q R + + K G IL+A Sbjct: 243 MHHIKSLLVFCNTKRKVDEIVEDLQLRGYASEGIHGDLRQQQRSNVMSKFKAGVTTILVA 302 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 TDVAARG+DV + V+NYDIPMD E YVHRIGRTGRAG +G+A V E+ L++IE Sbjct: 303 TDVAARGIDVSGLDGVINYDIPMDEEYYVHRIGRTGRAGMSGKAFSLVARDEKYRLKSIE 362 Query: 362 RTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQL-ESSDLDQYRALLSKIQPTAEGEELD 420 K+ I + +P+ E + R +F + + ES+D + Y +L + + E Sbjct: 363 SYTKVKIEKGVIPSFEDIVGVRKARFVENISNSIKESNDEELYNDVLEMLHHSGFSTEQI 422 Query: 421 LETLAAALLKMAQGERTL-------------------------IVPPDAPMRPKREFRDR 455 + +A ++ + + E + R + R Sbjct: 423 VGAMAKQIMGVQKNEYSDSNLAWEERRSERREGGNDRFGRGERREGGRFGDRREGGSRFG 482 Query: 456 DDRGPRDRNDRGPRGDREDRPRRERR--DVGDMQLYRIEVGRDDGVEVRHIVGAIANEGD 513 DRG RG RGDR R+ M + +GR D + + IVGAIA E + Sbjct: 483 SDRGGDRYAPRGERGDRGGDRGERRQSAPEAGMTRLFLSLGRKDHIMPKDIVGAIAGEAN 542 Query: 514 ISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLG 561 I + IG I ++ + +++P+ VL+ I KP+ + + Sbjct: 543 IPGKTIGAIDIYDKFTFVDVPERDARAVLRAMDGNTIKGKPVQIDIAK 590 >UniRef50_P44586 Cold-shock DEAD box protein A homolog n=29 Tax=Pasteurellaceae RepID=DEAD_HAEIN Length = 613 Score = 694 bits (1792), Expect = 0.0, Method: Composition-based stats. Identities = 385/617 (62%), Positives = 471/617 (76%), Gaps = 18/617 (2%) Query: 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 + TF DLGL IL+A++DLG+E PSPIQ CIPHLLNG DVLGMAQTGSGKTAAF+LPL Sbjct: 4 KITFNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPL 63 Query: 65 LQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 L +DP K PQ+LV+APTRELA+QVA+A F K+ +G +V LYGGQRYD+QLRAL+Q Sbjct: 64 LAQIDPSEKHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRALKQ 123 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 G Q+VVGTPGR+LDH++RGTL+LS+L +VLDEADEMLRMGFI+DVET+MA++PE HQTA Sbjct: 124 GAQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTA 183 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 LFSATMPE IRRIT+RFM +PQEV+I+ + PDI QS W V G+RKNEAL+RFLE ED Sbjct: 184 LFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVED 243 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 FDAAIIF RTK TL++ E LE+NG+ SAALNGDM Q LREQTL+RL++G LDI++ATDV Sbjct: 244 FDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATDV 303 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 AARG+D+ERISLVVNYDIP+D+ESYVHRIGRTGRAGR+GRALLFVE RERRLLRNIE M Sbjct: 304 AARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLM 363 Query: 365 KLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETL 424 K I EVELPN +L + R +KF AK+ +QLE DL+QYR+LL + + D E + Sbjct: 364 KKGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLF----TADQDQENI 419 Query: 425 AAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVG 484 AAA+L + QG++ LI+PPD PM +R R+R+DRG R N R E R+ + Sbjct: 420 AAAMLMLLQGKQKLILPPDPPMEKRR--RERNDRGDRRENPRSAERRGE---RKGYGNPQ 474 Query: 485 DMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQH 544 M LYRIEVGR DGVEVRHIVGAIANEGDI+SRYIG+IKL+ ++T+ELP+GMP E+LQ Sbjct: 475 PMDLYRIEVGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQGMPKELLQQ 534 Query: 545 FTRTRILNKPMNMQLLGDAQPHTG-------GERRGGGRGFGGER-REGGRNFSGERREG 596 F +TR+LNK M M LG + G+R+G G F GER RE G + G R+ Sbjct: 535 FAKTRVLNKQMQMSFLGAVKSDNSRGSDDFNGKRKGRGGDFRGERGRERGNDNRGNRKFN 594 Query: 597 GRGDGRRFSGERREGRA 613 + + R FS + R R Sbjct: 595 EKSN-RTFSDKPRRDRR 610 >UniRef50_B0TII3 Dead/deah box helicase n=18 Tax=Bacteria RepID=B0TII3_HELMI Length = 540 Score = 692 bits (1786), Expect = 0.0, Method: Composition-based stats. Identities = 218/562 (38%), Positives = 326/562 (58%), Gaps = 35/562 (6%) Query: 2 AEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFS 61 A+ + F ++ L + +A+ D+G+E+PSPIQA+ IP ++ G+D++G AQTG+GKTA F Sbjct: 14 AKDKVKFGEIELSPKVAKAIFDMGFEEPSPIQAKAIPVIMQGKDLIGQAQTGTGKTATFG 73 Query: 62 LPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 +P+ + L+P Q LVL PTRELA+QVA+ ++ + + + +YGGQ D Q+RA Sbjct: 74 IPMAETLNPRDGRVQALVLCPTRELAIQVAQEISKIGRQ-NDLKALPVYGGQSIDRQIRA 132 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 LR G Q+V+GTPGR+LDHL R TL L+ + +VLDEADEML MGF+ED+E I+ + PE Sbjct: 133 LRYGVQVVIGTPGRILDHLSRKTLRLNNVRMVVLDEADEMLDMGFVEDIEAILKETPEER 192 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 QT LFSATMP I+++ R++MKEP+ V I T P I Q Y+ +K +AL R L+ Sbjct: 193 QTLLFSATMPGPIQQLARQYMKEPEFVTISRDKLTVPLIEQVYYECKESQKVDALCRILD 252 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 E+ ++IIF RTK E+ ALE GY + L+GD+ QA R++ +++ +DG+ ++LIA Sbjct: 253 MEEIGSSIIFCRTKRGVDELVAALETRGYFAEGLHGDLTQAQRDRVMKKFRDGKAELLIA 312 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 TDVAARGLDVE ++ V+NYDIP D ESYVHRIGRTGRAGR G A+ + RE R L+ IE Sbjct: 313 TDVAARGLDVENVTHVINYDIPQDPESYVHRIGRTGRAGRKGIAITLINYREYRQLKLIE 372 Query: 362 RTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDL 421 R K I +LP+ + +R+ E K+ + L+ +Y++++S++ EE D Sbjct: 373 RVTKARIQRRDLPSMADIVERQKEAHKMKIVKLLDGGHFGEYKSIISEL-----AEEYDP 427 Query: 422 ETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERR 481 +AAA LK+ D + Sbjct: 428 MEIAAATLKLLIEGPEAETEKDEAPEFGNTGAE--------------------------- 460 Query: 482 DVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEV 541 M + +GR G+ + IV AIA E I IG I ++ + +E+P+ + G V Sbjct: 461 --PGMVRLFMNIGRAQGIRPQDIVRAIAEEAGIPGNVIGVINIYDKFTFVEVPEDVAGRV 518 Query: 542 LQHFTRTRILNKPMNMQLLGDA 563 + + I + ++++ Sbjct: 519 MGVMHQNMIKGRKISVEPAKAR 540 >UniRef50_C5EJJ1 DEAD/DEAH box helicase domain-containing protein n=7 Tax=cellular organisms RepID=C5EJJ1_9FIRM Length = 572 Score = 691 bits (1784), Expect = 0.0, Method: Composition-based stats. Identities = 222/575 (38%), Positives = 326/575 (56%), Gaps = 19/575 (3%) Query: 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 F +L L I+ A+ ++G+E+ SPIQA+ IP + GRD++G AQTG+GKTAAF +PL Sbjct: 3 TVKFDELQLDERIIRAITEMGFEEASPIQAQAIPVAMEGRDMIGQAQTGTGKTAAFGIPL 62 Query: 65 LQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 LQ +DP++K Q ++L PTRELA+QVAE M +K M G V+ +YGGQ Q+R+L+ Sbjct: 63 LQKVDPKVKKLQAIILLPTRELAIQVAEEMRRLAKFMHGTKVLPIYGGQDIVKQIRSLKD 122 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 G QIVVGTPGR++DH++R T+ + + +VLDEADEML MGF+ED+ETI++Q+PE QT Sbjct: 123 GTQIVVGTPGRVMDHMRRKTVKMDHVHTVVLDEADEMLNMGFLEDMETILSQLPEERQTL 182 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 +FSATMP+AI I R+F +P VR+ T P ++Q Y+ V K E + R L+ Sbjct: 183 MFSATMPQAIADIARKFQDDPVTVRVIKKELTVPKVTQYYYEVKPKNKVEVMCRLLDMYA 242 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 +I+F TK E+ +AL+ GY + L+GD+ Q R++ + ++GR DIL+ATDV Sbjct: 243 PKLSIVFCNTKRQVDELVQALQGRGYFAEGLHGDLKQVQRDRVMGSFRNGRTDILVATDV 302 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 AARG+DV + V NYD+P D E YVHRIGRTGRAGR G+A V +E LR+I+R Sbjct: 303 AARGIDVGDVEAVFNYDVPQDDEYYVHRIGRTGRAGREGKAFSLVVGKEVYKLRDIQRYC 362 Query: 365 KLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETL 424 K I +P+ + + ++EK +V L +DL + ++ K E+ L Sbjct: 363 KTKIIPQAIPSLNDITEIKVEKVLDQVMDILNDNDLTKMVNIIEKKLIE---EDYTSMDL 419 Query: 425 AAALLKMAQGERTLIVPPDAPMRPKREFRDRDD--------------RGPRDRNDRGPRG 470 AAALLKM G+ V P R D D R Sbjct: 420 AAALLKMNMGDDNEDVIDC--TMPARSLDDLDSYGRGMGRGRGRERGSSSAYGRGRRGAT 477 Query: 471 DREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHST 530 DR G M I +G+ V I+GA+A E I R +G+I ++ ++ Sbjct: 478 DRAAIDYVLGEGDGQMARLFINIGKAQRVTPGDILGAVAGESGIPGRMVGSIDMYDGYTF 537 Query: 531 IELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQP 565 +++P EVL+ + +I + ++++ + Sbjct: 538 VDVPGQYADEVLKAMSHAKIKGRNVHVEKANSNRR 572 >UniRef50_D2RJY3 DEAD/DEAH box helicase domain protein n=2 Tax=Firmicutes RepID=D2RJY3_ACIFE Length = 544 Score = 689 bits (1778), Expect = 0.0, Method: Composition-based stats. Identities = 221/559 (39%), Positives = 323/559 (57%), Gaps = 33/559 (5%) Query: 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 T+F DL L IL AL ++G+E+PSPIQ IP L G D++G AQTG+GKTAAF +P+ Sbjct: 18 ITSFEDLNLDRKILAALKEMGFEEPSPIQKGAIPMALEGEDLIGQAQTGTGKTAAFGIPI 77 Query: 65 LQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 +Q ++ + + Q LV++PTREL +QVA+ ++ K + + V+ +YGGQ + Q+R+L++ Sbjct: 78 IQKINEKDRHIQALVMSPTRELCIQVADEISKIGK-TKRIRVLPVYGGQPIERQIRSLKR 136 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 G Q+V+GTPGRLLDH++RGT+DL ++ LVLDEADEML MGF++D+E I+ +P QT Sbjct: 137 GIQVVIGTPGRLLDHIRRGTIDLEYVNFLVLDEADEMLDMGFVDDMENIIKNVPPERQTM 196 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 LFSATMP I I++++M+ P+ V I V T P I Q Y+ K + L R L+ D Sbjct: 197 LFSATMPRPILSISKKYMRAPKVVAIHKEVVTAPTIDQYYYET--RDKVDGLCRILDTTD 254 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 IIF RTK E+ AL GY + L+GD++Q R++ +++ + G++DIL+ATDV Sbjct: 255 DCKMIIFCRTKKGVDELVIALATRGYEAEGLHGDLSQNQRDRVMKKFRSGQVDILVATDV 314 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 AARGLD++ I+ VVN+D+P DSESYVHRIGRTGRAG G AL F+ RE R L+ IER++ Sbjct: 315 AARGLDIDNITHVVNFDVPSDSESYVHRIGRTGRAGNTGVALTFITPREFRQLKLIERSI 374 Query: 365 KLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETL 424 K I LP + +R+ E+ +K+Q LE Y ++ + ++ D++ + Sbjct: 375 KTKIIRGTLPTDASVLERQREQIVSKMQTILEQDRYQDYLPIVETL-----EKDYDVQDI 429 Query: 425 AAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVG 484 AAA LK Q + P + Sbjct: 430 AAAALKFMQEGAKALEEPAEE-------------------------ESLPDALANTGAKP 464 Query: 485 DMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQH 544 M + +GR V VR IV +IA E +I +R IG I ++ S +E+P +VL Sbjct: 465 GMVRLFVNIGRSSRVTVRDIVQSIAIEAEIPARSIGRISIYDKFSFVEVPMEHAEKVLAV 524 Query: 545 FTRTRILNKPMNMQLLGDA 563 R I +NM+ Sbjct: 525 MHRNTIRGCRVNMEPAKAR 543 >UniRef50_C9RIQ5 DEAD/DEAH box helicase domain protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RIQ5_FIBSS Length = 802 Score = 685 bits (1768), Expect = 0.0, Method: Composition-based stats. Identities = 289/650 (44%), Positives = 392/650 (60%), Gaps = 28/650 (4%) Query: 3 EFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSL 62 E TF DLGL +LEA+ GYE PSPIQA+ IP LL G ++LG AQTG+GKTAAFSL Sbjct: 121 ESLVTFDDLGLSPEVLEAVKLAGYETPSPIQAKAIPALLQGANLLGTAQTGTGKTAAFSL 180 Query: 63 PLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 PLL ++ + +LVL PTRELA+QV++A+ ++ M+ V VV +YGGQ +QLRAL Sbjct: 181 PLLSRINFNGRETSMLVLTPTRELAIQVSDAIQQYAVKMQNVTVVPVYGGQDIAIQLRAL 240 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 ++ IVV TPGRL+DH+KRG++ L + +VLDEADEML MGF+EDVETI+ +IP Q Sbjct: 241 KRKASIVVATPGRLIDHIKRGSISLGAVKAIVLDEADEMLDMGFMEDVETILKEIPADAQ 300 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 ALFSATMP+++++I + + E +E RI+ TT +I Q Y V K EAL R LE Sbjct: 301 RALFSATMPDSVKKIIDQHLGEYEEARIEGKTTTVENICQRYLLVKNEHKIEALARVLEG 360 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 E+FD +IFVRTK T EVAE LE G+N A LNGD+ Q++RE+T+ RLK G+LDI++AT Sbjct: 361 EEFDGVLIFVRTKQNTTEVAEKLESRGFNVAPLNGDLAQSMRERTINRLKMGKLDIVVAT 420 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 DVAARG+DV+RISLVVNYDIP D+ESYVHRIGRTGRAGR+G A+LF+ RE+R+L+ IE+ Sbjct: 421 DVAARGIDVDRISLVVNYDIPYDTESYVHRIGRTGRAGRSGNAILFITPREKRMLKTIEK 480 Query: 363 TMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKI------------ 410 + I +E+P +E + K+R++ F AKV+ + +LDQ++ L+ + Sbjct: 481 ATRQPIDVMEMPTSEQISKKRVDAFKAKVKSVVSYGELDQFKELVRALAAEGCNMKDGVA 540 Query: 411 QPTAEGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRD----RDDRGPRDRNDR 466 E+ E +AAA++KM Q ++ L PK RD G D Sbjct: 541 LEDGSVNEMTAEDIAAAVIKMYQKKQPLFPNLPPLEAPKERREKVRTGRDFLGESRNEDF 600 Query: 467 GPRGDREDRPRRERRD-----VGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGN 521 G + + R R+ER++ Y + VGR D V R IVGAIA E +I+S IG Sbjct: 601 GLNSEEQKRMRKERKEGLNGVEEGFLRYYLGVGRIDHVTPRDIVGAIAGEANINSSNIGR 660 Query: 522 IKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGE------RRGGG 575 IKLF ST+ELP +P +VL + I +++ D P R Sbjct: 661 IKLFDKFSTVELPNTLPQDVLDILSEMTIRGNDARFRVMTDEPPEGPAPGTRPHASREER 720 Query: 576 RGFGGERREGGR-NFSGERREGGRGDGRRFSGERREGRAPRRDDSTGRRR 624 R F +R+ G + R G RF + E R RR+ R+ Sbjct: 721 RSFHRDRKGGFHDDERRGGFRKNREGGDRFGDKPFENRKARRERQFADRK 770 >UniRef50_C5S7U5 DEAD/DEAH box helicase domain protein n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S7U5_CHRVI Length = 662 Score = 684 bits (1765), Expect = 0.0, Method: Composition-based stats. Identities = 312/657 (47%), Positives = 408/657 (62%), Gaps = 44/657 (6%) Query: 3 EFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSL 62 E F LGL I +A+ +LGYE P+ IQ++CIPHLL GRD+LG AQTG+GKTAAF+L Sbjct: 6 ETSVGFDALGLSPVIAQAVKNLGYESPTAIQSQCIPHLLAGRDLLGQAQTGTGKTAAFAL 65 Query: 63 PLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 P+L LDP+L+ PQ+LVL PTRELA+QVAEA ++ ++G NV+ +YGGQ Y +QL L Sbjct: 66 PMLSRLDPDLRKPQVLVLTPTRELALQVAEAFQRYATDLKGFNVLPIYGGQGYGLQLSQL 125 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 ++ PQ++VGTPGR++DH++RGTL L + LVLDEADEML MGF ED++ I Q P Q Sbjct: 126 KRNPQVIVGTPGRVMDHIRRGTLALDSIRALVLDEADEMLNMGFAEDIDWIFDQAPAERQ 185 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 ALFSATMP AIRR+ + + +P EV+I ++ T I Q + V K + L R +E Sbjct: 186 VALFSATMPPAIRRVAQTRLVDPVEVKIAANSETVDTIEQHHCIVTRFHKLDVLTRIMEL 245 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 E FD +IFVRTKNAT E+A+ L+ +G+ + LNGDMNQ +RE+T+ERLK G+LD+L+AT Sbjct: 246 EPFDGLLIFVRTKNATTELADKLKAHGFAAEPLNGDMNQEMRERTVERLKQGQLDVLVAT 305 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 DVAARGLDVERIS VVNYDIP D +YVHRIGRTGRAGRAGRA+L VE RER LL++IER Sbjct: 306 DVAARGLDVERISHVVNYDIPTDPSAYVHRIGRTGRAGRAGRAILLVEPRERGLLKSIER 365 Query: 363 TMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLE 422 ++ IP +E P+A L + R+++F ++++ DLD + LL++I E E LD Sbjct: 366 VIRRPIPSMEPPSAAALSESRIDRFIGEIRKAQSEQDLDFFYRLLARISQEQEIEMLD-- 423 Query: 423 TLAAALLKMAQGERTLIVPPDAPMRPKR------------------------------EF 452 +AAAL + Q ER L V D P PKR + Sbjct: 424 -IAAALAYLNQRERPLNVKEDPPRPPKRFDERGERGRGRDGDRRQGGWEDRPPRRERFDE 482 Query: 453 RDRDDRGPRDRNDRGPRGDREDRPR--RERRDVGDMQLYRIEVGRDDGVEVRHIVGAIAN 510 RD + R R DR R +R +RP + RRD D+ YRIEVG GV R IVGAIAN Sbjct: 483 RDGNRDERRPRFDRAERSERPERPERGQPRRDDADLTSYRIEVGHQHGVSPREIVGAIAN 542 Query: 511 EGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGE 570 E + RYIG I + HS ++LPKGMP EV QH R + + + + ++ Sbjct: 543 ESGLEGRYIGRIDIRDDHSVVDLPKGMPNEVFQHLKRVYVRGQALRITPADESA------ 596 Query: 571 RRGGGRGFGGERREGGRNFSGERREGGRGDGRRFSGERREGRAPRRDDSTGRRRFGG 627 G G+G E R ER G F R+G APRR S+G+ GG Sbjct: 597 --GAGQGGAWEGRRDRSGPPRERDSRPPRAGGDFQRRDRDGYAPRR-PSSGKSNDGG 650 >UniRef50_D2NRF7 Superfamily II DNA and RNA helicase n=3 Tax=Bacteria RepID=D2NRF7_9MICC Length = 732 Score = 681 bits (1759), Expect = 0.0, Method: Composition-based stats. Identities = 282/659 (42%), Positives = 384/659 (58%), Gaps = 49/659 (7%) Query: 3 EFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSL 62 E F DLGL A +L AL ++GYEKPSPIQ + IP LL G DV+G+AQTG+GKTAAF+L Sbjct: 58 EEGVRFTDLGLDARVLAALEEVGYEKPSPIQEQTIPLLLEGHDVVGLAQTGTGKTAAFAL 117 Query: 63 PLLQN------LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYD 116 P L ++ + Q+LVLAPTRELA+QVAEA + ++ HM V+ +YGG Y Sbjct: 118 PALSRMAELADINGVSRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYG 177 Query: 117 VQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQ 176 QL LR+G Q+VVGTPGR++DHL++G+LDLS L LVLDEADEMLRMGF EDVE I+ Sbjct: 178 PQLAGLRRGAQVVVGTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVEKILEG 237 Query: 177 IPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEAL 236 P+ Q ALFSATMP +IR+I ++++ +P+EVR+++ TT +ISQ Y V K +A+ Sbjct: 238 TPDSKQVALFSATMPNSIRKIAQQYLNDPREVRVKAKTTTSSNISQRYMQVMHSHKLDAM 297 Query: 237 VRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRL 296 R LE E++D I+FVRTK T EVA+ L+ G+ +AA+NGD+ Q LRE+T++ L+DGR+ Sbjct: 298 TRVLEVENYDGIIVFVRTKKETEEVADKLKARGFAAAAINGDIPQQLRERTVDALRDGRI 357 Query: 297 DILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRL 356 DIL+ATDVAARGLDVERISLVVNYDIP D+ESYVHRIGRTGRAGR G A+LFV RE+ + Sbjct: 358 DILVATDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGREGAAILFVTPREKYM 417 Query: 357 LRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEG 416 LR IE+ + + + +P AE + + R ++FA ++ + +ES DL +R ++ + Sbjct: 418 LRQIEKATRQKVEPMHMPTAEAVNETRKQRFAQQITETIESEDLSFFRQIIEDYENEH-- 475 Query: 417 EELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRP 476 + E +AAAL +AQ R + + K +D DR R Sbjct: 476 -DTTAEDIAAALAVIAQQGRPFFLDESEDIAHKSRPFSDEDS------------DRGGRK 522 Query: 477 RRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKG 536 + + M Y++ VGR V IVGA+ANEG I IG+I + + + LP+ Sbjct: 523 AKRAHNDEGMVNYKLNVGRSSRVTAGAIVGALANEGGIKGSQIGSIDIRQHFTIVGLPED 582 Query: 537 MPGEVLQHFTRTRILNKPMNMQLL----------------------------GDAQPHTG 568 +P + T+I + +N++ D Sbjct: 583 LPRDFFDRLRDTKIAGEFINIRKDNGPKGGGGGRGFGGGRREGGYRGNREGGRDFGGRDN 642 Query: 569 GERRGGGRGFGGERREGGRNFSGERREGGRGDGRRFSGERREGRAPRRDDSTGRRRFGG 627 G G R GG R GG+ + R F G GR RRD R GG Sbjct: 643 RREGGYRGNRDGGRDFGGDRDFKRRDFGGKRNDRDFGGRDFGGRDNRRDGGYRGNRDGG 701 >UniRef50_B8J1L5 DEAD/DEAH box helicase domain protein n=3 Tax=Bacteria RepID=B8J1L5_DESDA Length = 595 Score = 677 bits (1748), Expect = 0.0, Method: Composition-based stats. Identities = 233/596 (39%), Positives = 328/596 (55%), Gaps = 4/596 (0%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 +F +LGL +L+A+ D+G+E+PSPIQ +P LL G D G AQTG+GKTAAF LP Sbjct: 1 MTASFEELGLSRELLKAVEDMGFEEPSPIQVLAVPCLLAGNDAFGQAQTGTGKTAAFGLP 60 Query: 64 LLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 +L L PE + Q L+L PTRELA+QVAE + + H RGV ++ +YGGQ + QLRAL Sbjct: 61 ILDKLTPE-RNTQALILCPTRELAIQVAEELNKLAAHKRGVAILPIYGGQPIERQLRALA 119 Query: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183 +G Q+VVGTPGR++DHLKRGTL LS+ S VLDEADEML MGF ED+E I+ Q P Q Sbjct: 120 KGVQVVVGTPGRVMDHLKRGTLRLSQASMAVLDEADEMLDMGFREDIEAILEQTPASCQR 179 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAE 243 LFSAT+P AIR +++RF++EP+ + + + T P I Q Y+ V +K +AL R L++ Sbjct: 180 VLFSATVPPAIRELSKRFLREPEMLTVAQKMLTVPAIEQIYYEVRPHQKMDALCRLLDSR 239 Query: 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 303 F A++F TK EV L++ GY S +L+G++ Q+ R++ ++R + LD+L+ATD Sbjct: 240 AFHKALVFCSTKRGADEVTTHLQQRGYQSDSLHGNLAQSQRDRVMQRFRAEGLDVLVATD 299 Query: 304 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 363 VAARGLDV+ + V+NYDIP D E YVHRIGRTGRAGR G A FV RE +R+I R Sbjct: 300 VAARGLDVDDVDAVINYDIPHDVEKYVHRIGRTGRAGRVGSAFTFVTMREHYKMRDIIRC 359 Query: 364 MKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLET 423 + I E LP+ + R + +V+Q +ES L+++ L+ T + Sbjct: 360 TRARITEGRLPSLRDVDNIRTSRLLDEVRQTVESGTLERWLTLVEDFLATQFPDGEITSR 419 Query: 424 LAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDV 483 +A L +R + R RD + + R + Sbjct: 420 DVSAALFKLLMQRDFGDQDKPLDQDPLALEPRRQYKDRDGAPGRREPGKPGARPQRREND 479 Query: 484 GDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQ 543 G M + VG R +VGAI E ISSR+IG I + + +E+ + M +VL Sbjct: 480 GPMTRLHLNVGHTHKATPRELVGAITGETGISSRHIGAISINKNFCVVEIAQEMADDVLA 539 Query: 544 HFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERREGGRG 599 R M++ R G RR+ + + R G Sbjct: 540 VLNRGVF---IAGMRVAAKVDSGKPAYPRPRKPFAPGPRRQAPGKYGKKGRNGPEE 592 >UniRef50_A8SKI7 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SKI7_9FIRM Length = 580 Score = 676 bits (1745), Expect = 0.0, Method: Composition-based stats. Identities = 194/565 (34%), Positives = 314/565 (55%), Gaps = 15/565 (2%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 F D L +L+A+ ++G+E+PSPIQ + IP +LN D++G AQTG+GKTA+F +P Sbjct: 1 MIENFNDFNLSKEVLKAVVEMGFEEPSPIQKQAIPTMLNNEDIIGQAQTGTGKTASFGIP 60 Query: 64 LLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 +++ ++ K Q +VL PTREL++QVAE ++ +K+ +GV VV +YGGQ + Q+R+L+ Sbjct: 61 IVEKVNKNSKTTQAMVLCPTRELSIQVAEEISKLAKY-KGVTVVPIYGGQPIERQIRSLK 119 Query: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183 G Q++VGTPGR++DH+KR TL + VLDEADEM MGF ED+E I+ +P QT Sbjct: 120 MGVQVIVGTPGRVIDHIKRKTLKTENIKTFVLDEADEMFDMGFREDIEKIIGFLPYERQT 179 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAE 243 FSATM + R+ EP+ +++ T P ++Q Y+ + K E L R L+ + Sbjct: 180 TFFSATMDHEMMDFAARYQSEPRLIKVVPKELTVPKVTQYYFALKHNMKLEILSRILDVQ 239 Query: 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 303 + ++F TK ++ L+ GY + L+GD+ Q R+ + + ++ +DIL+ATD Sbjct: 240 NPKLTVVFCNTKKMVDDLTAGLQSRGYFADGLHGDLKQIQRDGVMNKFRNSTIDILVATD 299 Query: 304 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 363 VAARG+DV+ + LV+NYD+P D E YVHRIGRT RAGR G A+ FV RE L I++ Sbjct: 300 VAARGIDVDDVDLVINYDMPQDVEYYVHRIGRTARAGREGTAISFVSPREMNTLSQIQKY 359 Query: 364 MKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLET 423 K I + ++P + L KR E+F +++++ ++ + L++ + E+ Sbjct: 360 TKTKIEKRDMPTLKDLIKRHEERFMEDIKEEINKNEHTKELNLINILM----SEDYSPID 415 Query: 424 LAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDV 483 +AA LLK L + ++ + + + N G E Sbjct: 416 IAACLLKHYNENNKLNNHEELIDVDIKKNKKKGNDKTSISNKGGKSNVTE---------- 465 Query: 484 GDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQ 543 + I +G GV RHIV A+ N+ +IS+R IG+I++F S + + K + + Sbjct: 466 KNSGRIYINIGSRKGVSQRHIVSALCNDANISARDIGDIEIFEKFSFVNIHKNALKDAVN 525 Query: 544 HFTRTRILNKPMNMQLLGDAQPHTG 568 + I + ++L + + Sbjct: 526 NLNNAHIKGFKVLVELANKKEDSSK 550 >UniRef50_D2LSA7 DEAD/DEAH box helicase domain protein n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LSA7_BACS4 Length = 528 Score = 676 bits (1745), Expect = 0.0, Method: Composition-based stats. Identities = 213/565 (37%), Positives = 321/565 (56%), Gaps = 40/565 (7%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 F D + I +A+ D+G+E PSPIQ + IP +L G DV+G AQTG+GKTAAF +PLL Sbjct: 2 MKFEDFQISNDIKKAIKDMGFEAPSPIQEKVIPEILKGHDVIGQAQTGTGKTAAFGIPLL 61 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 + + + + Q L+L PTRELA+QVA + SK R ++ +YGGQ Q++AL++G Sbjct: 62 EKVTSD-RQVQSLILTPTRELAIQVAGELQKLSKFKRS-QILPIYGGQSIGHQIKALKRG 119 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 Q+VVGTPGR+LDHL R TL L + L+LDEADEML MGFIED+E I+ Q+ QT L Sbjct: 120 VQVVVGTPGRVLDHLNRKTLQLRSVHTLILDEADEMLDMGFIEDIEKILQQVNTNRQTML 179 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSATMP IR+++ ++M P++V I T P I+Q Y+ V K ++L R +++E Sbjct: 180 FSATMPPPIRKLSNKYMNNPKQVTISKGEVTAPSINQVYFKVLEKNKLDSLCRVIDSETI 239 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 D IIF RTK E+ EAL+ GY + L+GD+ Q+ R+ +++ +D ++ LIATDVA Sbjct: 240 DLGIIFCRTKKGVAELTEALQARGYMADGLHGDLTQSQRDIVMKKFRDSSIEFLIATDVA 299 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARG+DVE +S V+NYDIP D ESYVHRIGRTGRAGR G A+ V RE + LR+IE +K Sbjct: 300 ARGIDVENVSHVINYDIPQDPESYVHRIGRTGRAGREGVAVTLVTPREMKHLRSIEAEIK 359 Query: 366 LTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQ--YRALLSKIQPTAEGEELDLET 423 +TIP +P+ E + +++ + ++ +ES + D Y L+S + Sbjct: 360 MTIPSQRIPSVEEVVEKQQHVWKGQIIDLIESEEDDAGLYDDLVSDLLNQ-----YPPNK 414 Query: 424 LAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDV 483 + A+LLK+A D +D G + +G Sbjct: 415 IVASLLKLAFY----------------SHEDLNDDGYDFGDTGAQKG------------- 445 Query: 484 GDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQ 543 M + I VGR+ + + + ++ I ++ +G I +F + + +E+P+ + V + Sbjct: 446 --MTRFFINVGRNIELTPKKLAEEVSQLVGIPTKSVGRIDIFDNFTFMEVPQEVAPFVYE 503 Query: 544 HFTRTRILNKPMNMQLLGDAQPHTG 568 +R+ +N++ Sbjct: 504 GLKYSRVNGARINLEPAKPRPKRNR 528 >UniRef50_D2QD85 DEAD/DEAH box helicase domain protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QD85_9SPHI Length = 643 Score = 674 bits (1739), Expect = 0.0, Method: Composition-based stats. Identities = 215/611 (35%), Positives = 328/611 (53%), Gaps = 57/611 (9%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F+ L + +L+A+ D+G+ PSPIQAE IP +L+GRDV+G AQTG+GKTAAF +P L Sbjct: 33 FSSLAISPELLQAVTDMGFISPSPIQAEAIPPILDGRDVIGQAQTGTGKTAAFGIPALDL 92 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 +D + ++ Q L+L PTRELA+QVAE + +K+ RG+ + A+YGG + Q+R+L+ G Sbjct: 93 IDVQDRSVQTLILCPTRELALQVAEEIKKLAKYKRGIRIEAIYGGDSIERQIRSLKSGVH 152 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 IV+GTPGR++DH++R TL L+ + ++LDEADEML MGF ED+E+I+ ++PE QT LFS Sbjct: 153 IVIGTPGRVMDHMERNTLKLNNVKMMILDEADEMLDMGFREDIESILEEMPEERQTILFS 212 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 ATM + I +IT++F K+P V++ T +I Q Y+ V K E + R ++ D Sbjct: 213 ATMSKPIMQITQKFQKDPVLVKVVKKELTNVNIEQVYFEVKSKAKVEVMCRLIDMYDLKL 272 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 ++F TK E+ E L+ GY + L+GD+ QA R + + + G +IL+ATDVAAR Sbjct: 273 LLVFCNTKRKVDEIVEDLQIRGYQAEGLHGDLRQAQRNNVMSKFRAGTTNILVATDVAAR 332 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 G+DV+ + V+N+DIP+D E YVHRIGRTGRAG++GRA FV E+ R I+ K+ Sbjct: 333 GIDVDDVDAVINFDIPLDEEYYVHRIGRTGRAGKSGRAFSFVGRDEKYRFREIQTYTKVK 392 Query: 368 IPEVELPNAELLGKRRLEKFAAKVQQQL-ESSDLDQYRALLSKIQPTAEGEELDLETLAA 426 + + +P+ E + R +F ++QQ + ES DL+ Y LL+++ E + L Sbjct: 393 VEKGVIPSFEDIVGVRKARFIEQLQQTIQESKDLNLYDDLLTQLNHAGFSTEQIVAALVK 452 Query: 427 ALLKMAQGERTL--------------------------------------IVPPDAPMRP 448 + + + E Sbjct: 453 RSMGLEKNEFADQNLNLEDDRRNGRDKYADRGRGEGGGRFEDRRGGSRFGDRDERGNSSR 512 Query: 449 KREFRDRDDRGPRDRNDRGPRGDREDR------------------PRRERRDVGDMQLYR 490 + R+ DRG DR G R R R +M Sbjct: 513 FGDRREGGDRGGSRFGDRRSDGGDRPRFNDRDRSGTGKPYFDRDDQRVPREREANMTRLM 572 Query: 491 IEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRI 550 + +GR D V IVGAIA E +I IG+I +F + +++PK + V+ I Sbjct: 573 VSIGRKDFVRPGDIVGAIAGEANIPGNSIGSIDIFDKFTYVDVPKDVANRVVDAMEGNTI 632 Query: 551 LNKPMNMQLLG 561 + +N+++ Sbjct: 633 KGRRVNIEVAR 643 >UniRef50_C7HXF4 DEAD/DEAH box helicase domain protein n=3 Tax=Bacteria RepID=C7HXF4_THIIN Length = 666 Score = 673 bits (1738), Expect = 0.0, Method: Composition-based stats. Identities = 291/669 (43%), Positives = 398/669 (59%), Gaps = 67/669 (10%) Query: 2 AEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFS 61 ++ + FA+LGL P+L+AL D+GYE PSPIQA IP LL GRDVLG AQTG+GKTAAF+ Sbjct: 3 SQQISPFAELGLPEPLLQALRDVGYETPSPIQAATIPPLLAGRDVLGQAQTGTGKTAAFA 62 Query: 62 LPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 LP+L +D + Q LVLAPTRELA+QVAEA ++ H+ G NV+ +YGGQ Y QL + Sbjct: 63 LPILAKIDCNARHTQALVLAPTRELAIQVAEAFARYATHLPGFNVLPIYGGQSYVPQLAS 122 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 L++G +VVGTPGR++DHL+RGTL L +L+ +VLDEADEMLRMGFI+DVE+I+ + P Sbjct: 123 LKRGAHVVVGTPGRIIDHLERGTLKLDQLAHMVLDEADEMLRMGFIDDVESILKKTPPQR 182 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 Q ALFSATMP AIRRI + ++++PQE+ I+++ TT I Q YW V G+ K +AL R LE Sbjct: 183 QVALFSATMPSAIRRIAQTYLRDPQEITIKAATTTATHIQQRYWMVSGLHKLDALTRILE 242 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 E F+ IIF RTK AT E+AE L G+ +AALNGD+ QALRE+ ++RLKDG+LDIL+A Sbjct: 243 VEPFEGMIIFARTKQATEELAEKLAARGFTAAALNGDVPQALRERMVQRLKDGQLDILVA 302 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 TDVAARGLDVERIS VVNYDIP D+ESYVHRIGRTGRAGR+G A+LFV RER LLR IE Sbjct: 303 TDVAARGLDVERISHVVNYDIPTDTESYVHRIGRTGRAGRSGDAILFVTPRERHLLRAIE 362 Query: 362 RTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDL 421 R + I +++LP+ E + R+ +F ++ + E L+ Y+ L+ + + ++ Sbjct: 363 RATRQPITQMQLPSTEAVNDSRISRFMERITEAREQEGLEDYQRLVERYEQEF---DIPA 419 Query: 422 ETLAAALLKMAQGERTLIVPPDAPMRPKREFRD--------------------RDDRGPR 461 +AAAL +M QG + L++ P + + R+ R R R Sbjct: 420 IEIAAALARMVQGNKPLLMRPGSEPSYNADTREESRAPRREREPREGREPRTPRPARATR 479 Query: 462 DRNDRGPRGDREDRPRRERRDVG------------------------------------- 484 + +PR Sbjct: 480 EEGPAARAPRERAKPRDLDDFTQTLMQAREAADAAPHSAPREAASAEHPAHSERTARGPH 539 Query: 485 -----DMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPG 539 + YR+EVGRD GVEVR++VGAIANE + +++IGNI + HS +ELP+GMP Sbjct: 540 TASDVRFETYRVEVGRDHGVEVRNLVGAIANEAGLENKHIGNIAIRGDHSFVELPEGMPK 599 Query: 540 EVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERREGGRG 599 +V + +T + + + + R R G + + +RR Sbjct: 600 DVFRTLQKTWVSGRQLQLT--KAEPVRDTARERPATRAPARRFDSGDTSPAPKRRAAPMP 657 Query: 600 DGRRFSGER 608 G+ F + Sbjct: 658 GGKSFKRKP 666 >UniRef50_C5RIK3 DEAD/DEAH box helicase domain protein n=3 Tax=Clostridia RepID=C5RIK3_CLOCL Length = 536 Score = 672 bits (1736), Expect = 0.0, Method: Composition-based stats. Identities = 217/565 (38%), Positives = 337/565 (59%), Gaps = 30/565 (5%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 M + + TF +L LK IL+A+ND+G+E+PSPIQ+E IP + G D++G AQTG+GKTAAF Sbjct: 1 MTKIK-TFNELNLKDEILKAINDMGFEEPSPIQSESIPVGIEGYDLIGQAQTGTGKTAAF 59 Query: 61 SLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 +L N+ + + PQ L+LAPTRELA+QV E + +K+MR +N++ +YGGQ D QLR Sbjct: 60 GSIILNNMSEKRRVPQALILAPTRELAIQVNEELVRIAKNMR-LNILPIYGGQPIDRQLR 118 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 ALR G IVVGTPGR+LDHL+R +L+ + LVLDEADEML MGFI+D+E +M + E Sbjct: 119 ALRNGVDIVVGTPGRVLDHLRRKSLNTEFVKFLVLDEADEMLNMGFIDDIEEVMKSLNED 178 Query: 181 HQTALFSATMPEAIRRITRRFMK-EPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239 QT LFSATMP+AI+R+++R+MK + + + I+ + T I+Q Y+ + + E+L R Sbjct: 179 RQTLLFSATMPDAIKRLSKRYMKSDAKLISIEKNTVTASTITQYYYEIKNSDRFESLCRI 238 Query: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299 ++A++ +AAIIF +TK E+ +++R GY ++GDMNQ R TL++ K+ LD L Sbjct: 239 IDADEPEAAIIFCKTKKGVDELVSSMQRRGYVVEGMHGDMNQNQRMNTLKKFKESNLDFL 298 Query: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359 +ATDVAARG+DVE ++ V+NYD+P D+ESYVHRIGRTGRA + G+A V RE +L+ Sbjct: 299 VATDVAARGIDVENVTHVINYDLPQDAESYVHRIGRTGRANKEGKAYTLVTPREYIVLKQ 358 Query: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEL 419 IE+T K I +P + + + + KV+ +E+ DL ++ +++ ++ Sbjct: 359 IEKTTKSKIKRNSVPTVDEIYDVKYKNVLNKVRDTIENEDLSKFIPYATEL-----DDDY 413 Query: 420 DLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRE 479 L +AAAL+K+A + R+ RG R Sbjct: 414 SLVDVAAALMKIAFSNELAYEYTTNALEVPEPMRNSSARGASRGQKR------------- 460 Query: 480 RRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPG 539 + GR D V + +V + I R IG+I + + S + + + Sbjct: 461 ---------LFVSAGRRDNVSPKELVQFFKDSSRIQPRQIGDIAIMENFSFVNVDTSIVD 511 Query: 540 EVLQHFTRTRILNKPMNMQLLGDAQ 564 ++L+ + R+ + +N+++ + + Sbjct: 512 DILKFSSGKRLKGRKINIEVAKERR 536 >UniRef50_C5CGQ2 DEAD/DEAH box helicase domain protein n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CGQ2_KOSOT Length = 524 Score = 672 bits (1734), Expect = 0.0, Method: Composition-based stats. Identities = 200/560 (35%), Positives = 311/560 (55%), Gaps = 36/560 (6%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 F+++GL +L ++ +G+ +P+PIQ++ IP +LNGRD++G A TG+GKTAAF +P Sbjct: 1 MSMNFSEMGLSRKMLNSIEKVGFVEPTPIQSKAIPVILNGRDIIGQAHTGTGKTAAFGIP 60 Query: 64 LLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 LL+ LD K Q L+L PTRELAVQVA + + + + + V+A+YGGQ + Q+ L+ Sbjct: 61 LLEMLDYSSKKVQALILCPTRELAVQVAREIAALASNRKEIEVLAIYGGQSIERQINTLK 120 Query: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183 +G Q+VVGTPGR++DH++R TL L +VLDEADEML MGF+ED+ I++ + + Q Sbjct: 121 KGIQVVVGTPGRIMDHMRRKTLKLDDTKFVVLDEADEMLNMGFLEDIRYILSHVGKERQI 180 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAE 243 +FSATMP+AI + + F KEP+ +++ + T + Q Y + RK +AL + +E Sbjct: 181 TMFSATMPKAIIALAQEFQKEPELIKVINRELTVSTVEQYYLEIGESRKFDALSKLIEYY 240 Query: 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 303 + +++F TK E+ L+ GY L+GDM+Q+LR + + ++ + +L+ATD Sbjct: 241 NPQLSLVFCNTKKKVDELVPMLQAKGYLVDGLHGDMSQSLRNRVMNSFRNKSIKVLVATD 300 Query: 304 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 363 VAARG+DV+ I V NYDIP D E YVHRIGRTGRAG+ G+A F R LR I+R Sbjct: 301 VAARGIDVDDIEAVFNYDIPQDEEYYVHRIGRTGRAGKTGKAFSFAYGRSLHRLREIQRY 360 Query: 364 MKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLET 423 K+ I + +P+ + + +R+E F ++ LE +L Y + ++ Sbjct: 361 TKIKIKSLNVPSEKDVNTKRMESFLGEINDILEQGNLSDYVPAVEELIARG----YTSME 416 Query: 424 LAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDV 483 +AAAL+KM + +N+ G + + DR Sbjct: 417 IAAALIKMNV-----------------------SKRAYSQNEAGAKNNNRDR-------- 445 Query: 484 GDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQ 543 +M + G + VR IVGAI E I IG+I+L + HS +E+ + V+ Sbjct: 446 -EMIKLFVSAGSKHNIRVRDIVGAITGEAGIPGDRIGSIELLSKHSYVEVERRYAELVID 504 Query: 544 HFTRTRILNKPMNMQLLGDA 563 R +I + +L Sbjct: 505 SLNRCKIKGNKIVAELARAK 524 >UniRef50_Q11UP8 ATP-dependent RNA helicase (Cold-shock DEAD-box protein A) n=2 Tax=Bacteria RepID=Q11UP8_CYTH3 Length = 580 Score = 671 bits (1733), Expect = 0.0, Method: Composition-based stats. Identities = 210/578 (36%), Positives = 315/578 (54%), Gaps = 21/578 (3%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F DLGL ++EA+ +GY + +PIQ + IP L+ G+D+ G AQTG+GKTAAF +P +++ Sbjct: 3 FKDLGLSPEVVEAIESIGYSEATPIQEKTIPILMTGKDLTGQAQTGTGKTAAFGIPAIEH 62 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 +D + Q L+L PTRELA+QV + SK +G+ V+A+YGG+ + Q+R L+ G Sbjct: 63 VDISINQTQSLILCPTRELALQVCTELKKLSKFKKGLRVLAVYGGESIERQIRDLKAGAH 122 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 IVVGTPGR++DHL R TL+ S LS ++LDEADEML MGF ED+E I+ ++PE QT LFS Sbjct: 123 IVVGTPGRIIDHLDRRTLNASHLSQIILDEADEMLNMGFREDIELILTRLPEERQTVLFS 182 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 AT+ I + +RF P+ ++I+ T + Q Y+ V +K E + + ++ + Sbjct: 183 ATLAPPILALAKRFQNNPEIIKIERKELTISTVEQFYYLVKNSQKTEIVTQIIDLNNLQL 242 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 +IF TK EV + L+ G+N +L+GD Q R + + + + G +IL+ATDVAAR Sbjct: 243 MLIFCNTKRKVEEVTDELKAYGHNPISLHGDKTQRDRTEVMSKFRKGLANILVATDVAAR 302 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 G+DV + V+NYD+P+D E+YVHRIGRTGRAG+ G++ V + E+ LR+IER K T Sbjct: 303 GIDVTGVDAVINYDVPLDIENYVHRIGRTGRAGQLGKSFTLVTSDEKYKLRDIERYTKAT 362 Query: 368 IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTA-----------EG 416 I + E P + L + +K A ++ +LE ++ + LL + + Sbjct: 363 IEKAETPTRQELVAYKKDKLATRITTELEKPNIKIWSDLLEEYKEKGITADQIAIALLSK 422 Query: 417 EELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRP 476 E DL + + R D R R R R +DR R Sbjct: 423 EMKDLAEPERRVFEDRGDRRDRGDRGDRGGRFDRGDRRDGPRRDGRSSDRFGDRPAASRD 482 Query: 477 RR----------ERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFA 526 R R M + VGR D + IVGA A E +I IG I +F Sbjct: 483 RDGGERRERTPRPRTSDASMARLFVNVGRIDRISPGDIVGAFAGEANIKGSQIGQIDIFD 542 Query: 527 SHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQ 564 +S +ELP + +V+ +I K +N+++ Q Sbjct: 543 KYSFVELPHDLVDQVMDGMRNNKIKGKSINIEISNGKQ 580 >UniRef50_A4BET4 DEAD/DEAH box helicase-like protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BET4_9GAMM Length = 579 Score = 668 bits (1724), Expect = 0.0, Method: Composition-based stats. Identities = 271/585 (46%), Positives = 380/585 (64%), Gaps = 20/585 (3%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 M+E TFADLGL +L+ L+ LGYE P+PIQ++ I LL+G DVLG+AQTG+GKTAAF Sbjct: 1 MSE-SLTFADLGLAPVLLKTLDSLGYETPTPIQSQAIVQLLDGNDVLGLAQTGTGKTAAF 59 Query: 61 SLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 SLPLL +D PQ LVL PTRELA+QVAEA +++ + +V+ +YGG QLR Sbjct: 60 SLPLLSRIDTTKNKPQALVLCPTRELAIQVAEAFQTYARGVDNFHVLPIYGGADMRNQLR 119 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 AL+Q PQ++VGTPGR++DHL+RGTLDLS L LVLDEADEMLRMGFIED++ I+ P+ Sbjct: 120 ALKQNPQVIVGTPGRVMDHLRRGTLDLSDLKHLVLDEADEMLRMGFIEDIDWILEHTPKD 179 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 QTALFSATMP I+RIT ++ K+P ++ I++S + I Q W G+ K + L R L Sbjct: 180 KQTALFSATMPHQIKRITDQYQKDPVKIEIKASHSELQQIEQLVWRARGLDKLDGLTRIL 239 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 E ED++A IIFVRT+ ++E L GY + AL+G++ Q RE L +K G+LDI+I Sbjct: 240 EIEDWNAIIIFVRTRVECQFLSEKLAARGYAATALSGEVAQKQREDILSAMKKGKLDIII 299 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATDVAARG+D+ERI+ V+N+DIP D +Y HRIGRTGRAGR+G+A+LF + RE+R++R+I Sbjct: 300 ATDVAARGIDIERITHVINWDIPGDVSTYTHRIGRTGRAGRSGKAILFCKPREQRIIRDI 359 Query: 361 ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELD 420 ER K + + +P+AE LG+ R F + V + +E+ LD ++A+++ E Sbjct: 360 ERATKSELIDYPMPSAEKLGEHRAAAFKSTVVEHIEADKLDYFKAMITSWVDEG---EHS 416 Query: 421 LETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRER 480 L +AA++ MAQ ++ L +P D RP+R+ DR RG R Sbjct: 417 LLDIAASMALMAQEDKPLQLPKDPEPRPRRDREDRPTRGESRNRRRDLDY---------- 466 Query: 481 RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGE 540 YR++VGR D E IVGAIANEG I ++I NI + + + ++LP GMP E Sbjct: 467 ----AAITYRLDVGRRDRAEPGSIVGAIANEGGIEGKFINNIDIKENFTLVDLPDGMPTE 522 Query: 541 VLQHFTRTRILNKPMNMQLLGDAQPHTGGER--RGGGRGFGGERR 583 + + +TR+ +P+N+++ D P G +R R R GG+R+ Sbjct: 523 IFEQLKKTRVKGRPLNLRVWKDEAPKDGKDRGNRRPSRRDGGDRK 567 >UniRef50_Q5ZT20 ATP-dependent RNA helicase n=4 Tax=Legionella pneumophila RepID=Q5ZT20_LEGPH Length = 589 Score = 667 bits (1723), Expect = 0.0, Method: Composition-based stats. Identities = 253/589 (42%), Positives = 365/589 (61%), Gaps = 26/589 (4%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 M + + F+ + +AL D+ + PSPIQA+ IP +L GRD + +AQTG+GKTAAF Sbjct: 1 MNQEISNFSTFNFSNALNKALEDMKFITPSPIQAQTIPLILQGRDAIALAQTGTGKTAAF 60 Query: 61 SLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 +LP+LQNL PE+ Q L+LAPTRELA+QVAE SK+ R V + L GGQ Y QL+ Sbjct: 61 ALPILQNLSPEISTTQALILAPTRELAIQVAEQFELLSKYQRNVTIAVLCGGQEYGRQLK 120 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 LR G Q+VVGTPGR+LDH+ +GTL L+ L +LDEADEMLRMGFIEDVETI+ ++PE Sbjct: 121 QLRSGAQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEKLPEK 180 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 Q ALFSATMP IR+I ++ +P + I+ T I Q + +K +AL+R L Sbjct: 181 KQMALFSATMPYRIRQIANTYLNDPASIEIRMETATVKSIEQRFLFASVHQKPDALIRVL 240 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 E ED+ I+FVRTK++T EVAE L+++G + A++GD+ Q+LRE+ + + K G +DIL+ Sbjct: 241 EVEDYQGVIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIAQFKQGAIDILV 300 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATDVAARGLDVER++ V+NYD+P D+E+YVHRIGRTGRAGR+G +LFV +E RL+ +I Sbjct: 301 ATDVAARGLDVERVTHVINYDMPHDNETYVHRIGRTGRAGRSGVTILFVTPKESRLISSI 360 Query: 361 ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELD 420 ER + I +V++PN ++ R ++F + + +L + Y+ ++ + + +D Sbjct: 361 ERHTRQRIEKVQVPNDHMIQMARQQRFMSNITTRLNHEHVYSYKRIVEEYIKEHDVSAVD 420 Query: 421 LETLAAALLKMAQGERTLIVPPDAPMRPKREF------------RDRDDRGPRDRNDRGP 468 + A LL R + P A K E R ++DR + +G Sbjct: 421 VAAALALLLHKDMPWRKELNMPKAASAFKEERARAGEKGLDLRGRFKEDRKSSFADRKGA 480 Query: 469 RGDREDRPRRERRDVGDM--------------QLYRIEVGRDDGVEVRHIVGAIANEGDI 514 RG ++D + + L+RI+VG+ GV+ +IVGAIANE + Sbjct: 481 RGSKKDFAKDFSNERKKFNDGRKAVNQESVAQDLFRIDVGKIHGVKPGNIVGAIANEAGL 540 Query: 515 SSRYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDA 563 SRYI +K+ HST+ LPKGMP EV++ T+ + + +N+ L+G A Sbjct: 541 QSRYITGLKIHEDHSTVRLPKGMPKEVMKDLTKAWVCGRQLNLTLIGSA 589 >UniRef50_A6KZW9 ATP-dependent RNA helicase n=51 Tax=Bacteria RepID=A6KZW9_BACV8 Length = 624 Score = 666 bits (1720), Expect = 0.0, Method: Composition-based stats. Identities = 193/626 (30%), Positives = 331/626 (52%), Gaps = 25/626 (3%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLL-NGRDVLGMAQTGSGKTAAFSLPL 64 TF +LG+ IL+A+ ++GYE P P+Q E IP+LL NG DV+ +AQTG+GKTAAF LPL Sbjct: 2 KTFEELGVSPEILKAIKEMGYENPMPVQEEVIPYLLGNGNDVVALAQTGTGKTAAFGLPL 61 Query: 65 LQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 +Q +D + +APQ L+L PTREL +Q+A + D+SK++ G+ ++ +YGG + Q+R L+ Sbjct: 62 IQKVDVKHRAPQALILCPTRELCLQIAGDLNDYSKYIDGLKILPVYGGSSIESQIRMLKT 121 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 G I+V TPGRL+D ++R L ++ +V+DEADEML MGF + + I+ ++PE T Sbjct: 122 GVHIIVATPGRLIDLIERKVAKLETITDVVMDEADEMLNMGFTDSINAILEKVPEDRNTL 181 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 +FSATM I RI ++++ + +E+ I + +++ + V K AL R + Sbjct: 182 MFSATMSPEISRIAKKYLHDAKEITIGTKNEGSKNVNHIAYLVHAKDKYAALKRIADYYP 241 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 IIF RT+ T E+A+ L ++GYN+ +L+G+++QA R+ +++ + L +L+ATDV Sbjct: 242 QIYGIIFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDLVMQKFRQRHLQLLVATDV 301 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 AARGLDV ++ V+NY +P D ESY HR GRTGRAG+ G ++ + RE+ +R IER + Sbjct: 302 AARGLDVNDLTHVINYGLPDDIESYTHRSGRTGRAGKTGISIAIINLREKGKMREIERII 361 Query: 365 KLTIPEVELPNAELLGKRRLEKFAAKVQQ-QLESSDLDQYRALLSKIQPTAEGEELDLET 423 E+P+ + + +++L K +++ ++ +++ + + + E+L Sbjct: 362 NKKFIMGEMPSGKQICEQQLIKLIDDIEKVKVNDEEIESFLPGIYRKLEWLSKEDLIKRV 421 Query: 424 LAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDV 483 ++ + + +R R +R R + ER+ Sbjct: 422 VSMEFNRFLEYYSNAPEIEIPSTNDRRSERGSKERKD----------HGSAREKTERKAE 471 Query: 484 GDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQ 543 + VG+ DG I+ I IG I L + S E+ + +V++ Sbjct: 472 KGYTRLFLNVGKTDGFYANQIIELINRNMKKQRTTIGRIDLMQNFSFFEVAENQAQDVIK 531 Query: 544 HFTRTRIL-NKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERREGGRGDGR 602 + + + + +++ GD G+ GERR + ++ R + + Sbjct: 532 ALNKVNLNGGRKIVVEVAGD----------NNGKNDNGERRSSAARNASFGKKSDRSNKK 581 Query: 603 RFSGERREGRAPRR--DDSTGRRRFG 626 S E R RA R ++ + + Sbjct: 582 TTSKEGRPSRAERGYIEERGPKTKDD 607 >UniRef50_A4C3X3 RNA helicase DeaD n=3 Tax=Alteromonadales RepID=A4C3X3_9GAMM Length = 624 Score = 666 bits (1719), Expect = 0.0, Method: Composition-based stats. Identities = 287/619 (46%), Positives = 376/619 (60%), Gaps = 11/619 (1%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 + F L L AP+L+A+N++GY P+PIQ++ IP LL G+DVLG AQTG+GKTAAF LP Sbjct: 5 TQVRFDQLNLLAPVLQAINEMGYITPTPIQSQAIPSLLAGKDVLGEAQTGTGKTAAFGLP 64 Query: 64 LLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 LL LD +LK PQ+LV+ PTRELA+QVAEA+TDF+KH+RG+ V +YGGQ Y QLR L Sbjct: 65 LLSRLDADLKQPQMLVVCPTRELAIQVAEALTDFAKHIRGLFVATVYGGQSYTPQLRDLA 124 Query: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183 +GPQIVVGTPGR++DH+K+G L L L VLDEADEML MGF+ED+E I+ QIP+ Q Sbjct: 125 RGPQIVVGTPGRMMDHIKKGRLKLDNLKACVLDEADEMLNMGFLEDIEWILNQIPDQTQM 184 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAE 243 A FSATMP I++IT +F+ +P V+I + +P I+Q WTV + K L R E Sbjct: 185 AFFSATMPAPIKKITNQFLTDPIHVKIAVQKSDKPKITQKSWTVGRIGKTVGLERIAEVV 244 Query: 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 303 D+DA I+FVRT+N TL +AE L G+ ++ALNGDM Q RE+ +E+LK+GR++ILIATD Sbjct: 245 DYDAMIVFVRTRNDTLVLAEHLVSKGFKASALNGDMQQQDRERIVEQLKNGRINILIATD 304 Query: 304 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 363 V ARGLDV RI+ V+NYD+P DSESYVHRIGRTGRAGR G A+LF +RE R L +ER Sbjct: 305 VVARGLDVPRITHVINYDLPHDSESYVHRIGRTGRAGREGEAILFASHREVRSLSRLERI 364 Query: 364 MKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLET 423 + I ++P AE LG+ R+E+ A + + +E +DL ++A++S++ AE Sbjct: 365 TEGKIEVFDMPTAEQLGQARIERTQAALVKAMEVNDLANFQAIVSQM---AEQSNTTPLE 421 Query: 424 LAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDRE--DRPRRERR 481 LAAALL Q D R DR R DR DR R +R +R R RR Sbjct: 422 LAAALLFDRQIALPFHPKADPVEREFAARSDRGGRDRNDRFDRNDRSERAPRERSERPRR 481 Query: 482 DVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEV 541 D G+ YR VGR GV IVGA+ANE I S IG I+LF + ++LPK MP Sbjct: 482 DNGEFDTYRFNVGRTHGVRPGDIVGAVANEIKIDSNDIGQIRLFDGFTHVDLPKNMPKPA 541 Query: 542 LQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSG------ERRE 595 + + I ++ L+ Q +R R F Sbjct: 542 FEKLQQVLIRKHKISPSLVTAEQAAAADSQREERAPRSDRNDRAPREFQPRRRNERNNDR 601 Query: 596 GGRGDGRRFSGERREGRAP 614 G + R F P Sbjct: 602 GDKKPVRSFKASGEGRSRP 620 >UniRef50_Q2NEZ7 Predicted helicase n=20 Tax=cellular organisms RepID=Q2NEZ7_METST Length = 583 Score = 666 bits (1719), Expect = 0.0, Method: Composition-based stats. Identities = 210/621 (33%), Positives = 335/621 (53%), Gaps = 40/621 (6%) Query: 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 + F DL + I +A+ D+G+E+ SPIQ+ IP +L +DV G AQTG+GKTAAF +PL Sbjct: 3 KLKFKDLNISPEIQKAVADMGFEEASPIQSLAIPQILAHKDVTGQAQTGTGKTAAFGIPL 62 Query: 65 LQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 L+N+D E Q ++L PTRELA+QVAE + S ++ ++V+ +YGGQ D Q++AL++ Sbjct: 63 LENIDSEDNNLQAIILCPTRELAIQVAEELRKLSVYLPKIDVLPVYGGQPIDRQIKALQK 122 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 G QI++GTPGR++DH+ RGTL L+ + ++LDEADEML MGF ED+E I+ IP Q Sbjct: 123 GVQIIIGTPGRVMDHIDRGTLSLNNIKTVILDEADEMLDMGFREDIEYILEDIPYERQFL 182 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 LFSAT+P+ I ++ +R+ P+ V++ T PD+ Q Y+ V K E L R L+ D Sbjct: 183 LFSATLPQEILQLAQRYQTNPEIVKVTKHELTTPDVEQKYFEVKEDMKLELLSRLLDLHD 242 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 FD +++F TK ++ L+ GY + L+GD+ Q R++ + + K G ++IL+ATDV Sbjct: 243 FDLSLVFCNTKRKVDKLVSHLQIRGYLADGLHGDLTQNQRDRVMSKFKKGNIEILVATDV 302 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 AARG+DV + V N+DIP D+E YVHRIGRTGRAG+ G+A FV RE LR+I+R Sbjct: 303 AARGIDVGGVEAVFNFDIPNDNEYYVHRIGRTGRAGKTGKAYSFVSGREIYQLRDIQRYA 362 Query: 365 KLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETL 424 K I + +P + + + + F ++++++ + D+ + ++ K+ E+ + + Sbjct: 363 KTKIEQAPIPALSDVEEVKKDNFIEELKEKINTEDISKETYIIEKLVE----EDYNSIDI 418 Query: 425 AAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVG 484 AA LLK ++ Sbjct: 419 AATLLKGVIDDKRYKEEEFGDTE----------------------------------AHE 444 Query: 485 DMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQH 544 + + VGR + + I+ +I + ++ IGNI +F + S +E+PK + + Sbjct: 445 GFVRFFMSVGRKQNITISVILNSIYEKTGLTGHQIGNIDIFDNFSFVEIPKANASDFYRF 504 Query: 545 FTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERREGGRGDGRRF 604 T I NK +++ R R F +R + F+ R + + D R Sbjct: 505 MGDTYIENKRAHIEPARPRDKSKKNNTRNNNRNFNKKRGRKSKKFNPHRNDYHQKDSYRK 564 Query: 605 SGERREGRAPRRDDSTGRRRF 625 R+E + R D+ G + Sbjct: 565 DTYRKESKF--RKDNYGNESY 583 >UniRef50_C0Q9A4 DeaD n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0Q9A4_DESAH Length = 616 Score = 666 bits (1719), Expect = 0.0, Method: Composition-based stats. Identities = 269/599 (44%), Positives = 381/599 (63%), Gaps = 40/599 (6%) Query: 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 E+ F+++GL P+L+AL+DLGYE P+ IQAE IP++L GRD+LG AQTG+GKTAAF+LPL Sbjct: 18 ESGFSEMGLIKPVLKALDDLGYETPTTIQAETIPYILAGRDLLGQAQTGTGKTAAFALPL 77 Query: 65 LQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 L +D +LK PQ+LVLAPTRELA+QVAE+ ++ ++G NV+ +YGGQ Y QL L++ Sbjct: 78 LSRIDIKLKKPQVLVLAPTRELAIQVAESFKGYAARIKGFNVLPVYGGQAYAGQLNQLKR 137 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 G ++VGTPGRL+D +KRG LDL+++ LV+DEADEMLRMGFI+DVE I+ Q P G Q A Sbjct: 138 GVHVIVGTPGRLMDLMKRGVLDLTQIMTLVIDEADEMLRMGFIDDVEWILEQTPPGRQVA 197 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 LFSATMP I++I +++ +P++V I+ T I Q +W V G K +AL R LEAE Sbjct: 198 LFSATMPAPIKKIAIKYLTDPKDVFIRLRTATADTIRQRFWMVKGTHKLDALTRILEAET 257 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 FDA I+FVRTK AT+E+AE LE GY + ALNGD+ Q RE+T++R K G++DIL+ATDV Sbjct: 258 FDAIIVFVRTKTATVELAEKLEARGYAAVALNGDIAQKARERTIDRFKKGKIDILVATDV 317 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 AARGLDVER+S V+NYDIP +ESYVHRIGRTGRAGRAG A+LFV RER +L+ IE+T Sbjct: 318 AARGLDVERVSHVINYDIPNGAESYVHRIGRTGRAGRAGDAILFVSPRERWMLKVIEKTT 377 Query: 365 KLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETL 424 + I ++LP+ E + +R+ F + L S +LD Y L+ + + + LD+ Sbjct: 378 RQQIEMMKLPSTEAINDKRIADFNQSITDTLASKELDLYLELMEQYRQEHDVPALDIAAA 437 Query: 425 AAALLKMAQG-----ERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRE 479 A +L+ + + + V + P R + +F+D+ R D+ R D + + + Sbjct: 438 LALMLQGEKPLLLSSPKKVSVVSEKPSRTEDKFKDKPLRKDEKSRDKAFRKDEKPKDKPF 497 Query: 480 RRDVGD-----------------------------------MQLYRIEVGRDDGVEVRHI 504 R+D M+ +RIEVG G + + I Sbjct: 498 RKDDEKSRDKPSPKAAKLADKPAGKKKASPKKAAALPPGKGMERFRIEVGDVHGAKPKDI 557 Query: 505 VGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDA 563 VGAIANE ++ ++IG I + HS ++LP GMP + + + R+ + + + A Sbjct: 558 VGAIANEAELDGKFIGAITIEHDHSFVDLPIGMPATIFELLKKVRVAGQQLKISRSTKA 616 >UniRef50_C0W1P0 Superfamily II helicase n=2 Tax=Actinomyces RepID=C0W1P0_9ACTO Length = 616 Score = 665 bits (1716), Expect = 0.0, Method: Composition-based stats. Identities = 244/592 (41%), Positives = 351/592 (59%), Gaps = 7/592 (1%) Query: 3 EFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSL 62 E TTFADL L +L A+ ++G+E P+PIQ + IPHLL GRD++G+AQTG+GKTAAF L Sbjct: 2 ETMTTFADLNLPENVLSAITEMGFETPTPIQEQAIPHLLEGRDIVGIAQTGTGKTAAFGL 61 Query: 63 PLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 P+L ++DP A Q +VLAPTRELA+Q A A+ F+ HM V VV +YGG Y Q++ L Sbjct: 62 PMLAHIDPGFNAVQAIVLAPTRELAMQSATAIESFAAHMPKVKVVTVYGGASYTPQIKGL 121 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE--G 180 + G Q+VVGTPGR++D +++G L L+ +S LVLDEADEMLRMGF EDVETI A +PE Sbjct: 122 KSGAQVVVGTPGRVIDLIEKGALKLNNVSVLVLDEADEMLRMGFAEDVETIAASMPESGK 181 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 TALFSATMP+ I+R+ + + +P + + +T +I Q+Y V K AL R L Sbjct: 182 RITALFSATMPDFIQRVADQHLTDPVRIEVARQSSTVENIHQTYAVVPFKHKLGALGRVL 241 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 D DAAI+FVRT+ EVA + G+ +AA++GD++Q RE+ + RL+DG LD+L+ Sbjct: 242 ATRDEDAAIVFVRTRVDADEVAVDMATRGFTAAAISGDVSQNERERIVSRLRDGSLDVLV 301 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATDVAARGLDVERI LV+N+D+P ++E+YVHR+GRTGRAGRAGR+L F +E+ LR I Sbjct: 302 ATDVAARGLDVERIGLVINFDVPRETEAYVHRVGRTGRAGRAGRSLTFFTPKEQFRLRQI 361 Query: 361 ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELD 420 E+ + E+ +P+ + + R + + + ++E L+ Y LL +I+ T E E D Sbjct: 362 EKLTGTKMEEIVIPSPREVSEFRARRLVSLMPDRIELGRLELYYDLLHEIRHTTEIEVED 421 Query: 421 LETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGP-----RGDREDR 475 + A +G +R + E D + R R Sbjct: 422 IAAALLAHAIGDKGPSQEERRGAGKIRREEEIDDDGNFVAASFEAGRDGGKGGRAKGAKR 481 Query: 476 PRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPK 535 P R G + YR+EVG+ DGV+ IVGAI EG ++ +G I ++ + S +EL Sbjct: 482 PSAPRISSGFSRRYRVEVGKRDGVKPGAIVGAITGEGGVNGADLGRIDIYPTFSLVELSG 541 Query: 536 GMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGR 587 + + ++ + + + ++ +P G RG RG R Sbjct: 542 ELSEKAASKISKAFVSGRQLRIKEDTGPRPAAEGGDRGDRRGASRGRSADRS 593 >UniRef50_A6M3F5 DEAD/DEAH box helicase domain protein n=5 Tax=Clostridium RepID=A6M3F5_CLOB8 Length = 525 Score = 664 bits (1713), Expect = 0.0, Method: Composition-based stats. Identities = 203/564 (35%), Positives = 322/564 (57%), Gaps = 42/564 (7%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 + FA LGLK I++A++DLG+ KPS IQ + IP L+G D++G AQTG+GKTAA+SLP Sbjct: 2 NDNQFATLGLKESIVKAISDLGFTKPSQIQEQSIPVTLSGADLIGQAQTGTGKTAAYSLP 61 Query: 64 LLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 ++ + + + L+LAPTRELAVQV E + SK+ + + +A+YGG D Q+RALR Sbjct: 62 IITKMSDN-RGIKSLILAPTRELAVQVNEEIQRLSKYEK-IVTLAVYGGDSIDRQIRALR 119 Query: 124 QG-PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 +G IVVGTPGR+LD +KR L L + LVLDEADEML MGFI+D++ I++ P Q Sbjct: 120 KGDVDIVVGTPGRILDLVKRKCLHLESIEFLVLDEADEMLNMGFIDDIQEILSHTPSERQ 179 Query: 183 TALFSATMPEAIRRITRRFMK-EPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 T LFSATMP+ I ++ +++MK + + V I+ S T I QSY+ + + EAL R L+ Sbjct: 180 TLLFSATMPDPIAKLAKKYMKPDAKLVSIKRSSLTVSKIEQSYFMINNKHRLEALCRLLD 239 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 ++ +AIIF RTK E+ + L+ GY ++GDM QA R TL + K+G L++LIA Sbjct: 240 LDNPSSAIIFCRTKRGVDELVQELQSKGYMVEGMHGDMTQAHRLTTLNKFKEGTLNLLIA 299 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 TDVAARG+DVE ++ V NYD+P D ESYVHRIGRTGRA ++G A V ++ +L+ I+ Sbjct: 300 TDVAARGIDVEGVTHVFNYDLPQDVESYVHRIGRTGRANKSGTAYSLVTPKDFSMLKQIQ 359 Query: 362 RTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDL 421 K +I + +P AE + ++ + ++V+ +++ DL ++ ++ E D Sbjct: 360 NVTKSSITQKPVPTAEEINNKKFKDMMSEVESTIKAGDLTKFIPSAIEL-----TESYDA 414 Query: 422 ETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERR 481 ++ +AL+KM + + ++ Sbjct: 415 VSIISALMKMKFENEIVFDYSSNKLEAPKKED---------------------------- 446 Query: 482 DVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEV 541 VG+ DG+ + ++ I + +++ IG I L + S + + + + ++ Sbjct: 447 -----VRLFFSVGKRDGLTPKVLINYIKDMTKVNASAIGQIDLMENFSFVTVDESISSKI 501 Query: 542 LQHFTRTRILNKPMNMQLLGDAQP 565 L++ +I K +N+++ + Sbjct: 502 LKNCPGGKINKKKVNVEVANKRKR 525 >UniRef50_Q3AX69 DEAD/DEAH box helicase-like n=18 Tax=cellular organisms RepID=Q3AX69_SYNS9 Length = 624 Score = 660 bits (1703), Expect = 0.0, Method: Composition-based stats. Identities = 253/561 (45%), Positives = 350/561 (62%), Gaps = 6/561 (1%) Query: 2 AEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFS 61 +E ++ F G +L+ L D GY PSPIQ P L+ GRD++G AQTG+GKTAAF+ Sbjct: 67 SEPQSGFDGFGFSEALLKTLADKGYSDPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFA 126 Query: 62 LPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 LPLL+ L+ K PQ+LVLAPTRELA+QVA++ ++ + V+A+YGG + Q+ Sbjct: 127 LPLLERLESGQKTPQVLVLAPTRELAMQVADSFKAYAAGHPHLKVLAVYGGTDFRSQIST 186 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 LR+G +VVGTPGR++DH+++GTLD S L+ LVLDEADEMLRMGFI+DVE I+ Q+P+ Sbjct: 187 LRRGVDVVVGTPGRVMDHMRQGTLDTSGLTSLVLDEADEMLRMGFIDDVEWILEQLPKER 246 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 Q LFSATMP IRR+++R++ +P EV I++ I Q TV K EAL R L+ Sbjct: 247 QVVLFSATMPPEIRRLSKRYLNDPAEVTIKTKDQDGKLIRQRAITVPMSHKLEALQRVLD 306 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 A + IIF RTK TL VAE LE G+ A LNGD+ Q RE+T+ERL+ G +D+L+A Sbjct: 307 ACGGEGVIIFARTKVITLTVAETLEAAGHQVAVLNGDVPQNQRERTVERLRSGSVDVLVA 366 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 TDVAARGLDVERI LV+NYD+P DSE+YVHRIGRTGRAGR G A+LF+ RERR +RN+E Sbjct: 367 TDVAARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAVLFMTPRERRFIRNLE 426 Query: 362 RTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLES--SDLDQYRALLSKIQPTAEGEEL 419 R I +E+P + + RL++ ++ + + ++ + +Q A +L Sbjct: 427 RATGQPIEMMEVPGNTAINQGRLDRLRKRLSEAANGVAGNSEEGALIQELMQRVATELQL 486 Query: 420 DLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRE 479 E +A A L +A G L+ D + DRD DR +R R Sbjct: 487 TPEQIALAALNLAIGPNGLLRKGDDDWIQNTQRMDRDRGDRGDRGERRERRIDRP----A 542 Query: 480 RRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPG 539 R DMQ YR+ VG D V+ ++VGAIA E + R IG I++F +HS ++LPKGMP Sbjct: 543 RAPEEDMQRYRVAVGHRDRVKPGNLVGAIAGETGLQGRSIGRIQIFDNHSLVDLPKGMPE 602 Query: 540 EVLQHFTRTRILNKPMNMQLL 560 ++ R++N+ + + Sbjct: 603 DIFNSLRTLRVMNRELQITQD 623 >UniRef50_A6VJ89 DEAD/DEAH box helicase domain protein n=5 Tax=Euryarchaeota RepID=A6VJ89_METM7 Length = 546 Score = 659 bits (1702), Expect = 0.0, Method: Composition-based stats. Identities = 202/557 (36%), Positives = 320/557 (57%), Gaps = 15/557 (2%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNG-RDVLGMAQTGSGKTAAFSLPLL 65 +F +LGL I++AL G+ P+PIQ + IP L+ G RDV+G AQTG+GKTAAF +P+L Sbjct: 3 SFKNLGLSDEIIKALEKKGFTNPTPIQEQAIPILIEGKRDVVGQAQTGTGKTAAFGIPIL 62 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 + +D + Q L+LAPTRELA+QVAE + K + +NV +YGGQ D Q+R L++G Sbjct: 63 ETIDESSRNTQALILAPTRELAIQVAEEIDSI-KGSKRLNVFPVYGGQSIDRQIRELKRG 121 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 QIVVGTPGR+LDH+ R T+ L +S +VLDEADEML MGFI+DVE I+ + + L Sbjct: 122 VQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTEKRMLL 181 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSAT+P++I ++ + +M+E ++++ T QSY+ + K E L R ++ E Sbjct: 182 FSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSYYEIHSRDKFELLSRIIDVEKE 241 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 +IF +TK E++ L GY + L+GDM QA RE+TL++ K ++++L+ATDVA Sbjct: 242 FYGLIFCKTKADVDEISSRLTEKGYAAEGLHGDMTQAQREKTLDKFKARKINVLVATDVA 301 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARG+D+ ++ VVNYDIP + ESYVHRIGRTGRAG+ G A+ FVE E R + I++ Sbjct: 302 ARGIDINDLTHVVNYDIPQNPESYVHRIGRTGRAGKQGYAVTFVEPSEFRKFKYIQKIAN 361 Query: 366 LTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLA 425 I + E+P+ + + + K + +++ LES + + +++ E+ D + + Sbjct: 362 TEIRKEEVPDVKDIIGAKKRKIVSGIKELLESGKYNDCEKMAAELL-----EDADPQEVL 416 Query: 426 AALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGD 485 +A+LK A + +P +R RDR + G R+ R G Sbjct: 417 SAVLKYALKDELSESNYKRIGKPA-------NREGRDRGEGRSEGRRDRGEGRRSFVSGG 469 Query: 486 MQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHF 545 + +G+ D + + +V I+ + D+ R I ++K+F S + + +L F Sbjct: 470 NVRLFVALGKLDKMNPKKLVDHISKKSDVKGRDIDDVKVFEKFSFVTVSSDNAEIILDSF 529 Query: 546 TRTRILNKPMNMQLLGD 562 + + +++ Sbjct: 530 KHEK-RGRRSIIEVASG 545 >UniRef50_C1IBN1 DEAD-box ATP dependent DNA helicase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1IBN1_9CLOT Length = 526 Score = 656 bits (1692), Expect = 0.0, Method: Composition-based stats. Identities = 201/568 (35%), Positives = 315/568 (55%), Gaps = 43/568 (7%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 M E + F++LGLK +L+++NDLG+EKPS IQAE IP + G D++G AQTG+GKTAAF Sbjct: 1 MNEIK--FSNLGLKDTLLKSINDLGFEKPSQIQAEAIPVAIQGYDLIGQAQTGTGKTAAF 58 Query: 61 SLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 ++ ++ + ++LAPTRELA+QV + + SK+ + ++ +YGG Q+R Sbjct: 59 GCGIINHIS-KKSGLSAIILAPTRELAIQVNDELKRLSKY-DDLTILPVYGGDPITNQIR 116 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 AL++ IVVGTPGR+LDH+KRGT+ L ++ LVLDEADEML MGFI+D+E I+ Q+P Sbjct: 117 ALKRNVNIVVGTPGRVLDHIKRGTIKLDQIKFLVLDEADEMLNMGFIDDLEDIIKQLPSE 176 Query: 181 HQTALFSATMPEAIRRITRRFMK-EPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239 QT LFSATMP+ IR++ +R+MK + + + I+ + T ISQ+++ V + EAL R Sbjct: 177 RQTLLFSATMPDQIRKLAKRYMKPDAKHISIKKTSMTVSTISQNFFEVSHKTRFEALCRV 236 Query: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299 L+ + +AIIF RTK E+ E ++ GY ++GDM+QA R +TL++ K+G L+ L Sbjct: 237 LDFDTPSSAIIFCRTKKGVDELVEGMQSRGYVVEGMHGDMSQAHRLRTLKKFKEGSLNYL 296 Query: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359 +ATDVAARG+DVE I+ V+NYD+P D ESYVHRIGRTGRA R G A V +E +L+ Sbjct: 297 VATDVAARGIDVEGITHVINYDLPQDVESYVHRIGRTGRANREGIAYSLVSPKEYSMLKQ 356 Query: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEL 419 I+ K I +P + + + V + SD ++ + +++ Sbjct: 357 IKSVTKSDISRKNIPTVNDIFNSKSKSILEDVTNTINDSDYSKFIPVATELTQK-----Y 411 Query: 420 DLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRE 479 D + AAL+K + L + + Sbjct: 412 DSVEIIAALIKNKFNDDLLETYTSDVLEAPKSED-------------------------- 445 Query: 480 RRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPG 539 + +GR DG+ + +V I + I + IG+I + + S + + + Sbjct: 446 -------IRLFLSIGRRDGINPKTLVNFIKDTARIRASSIGDIDILENFSFVNISPDVKD 498 Query: 540 EVLQHFTRTRILNKPMNMQLLGDAQPHT 567 +VL ++ + +N+++ + Sbjct: 499 KVLDKCIGVKLNKRKVNIEVANKNRKRK 526 >UniRef50_Q11039 Cold-shock DEAD box protein A homolog n=27 Tax=Bacteria RepID=DEAD_MYCTU Length = 563 Score = 655 bits (1691), Expect = 0.0, Method: Composition-based stats. Identities = 257/574 (44%), Positives = 357/574 (62%), Gaps = 24/574 (4%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 TFADL + +L A+ D+GYE P+ IQA IP L+ G DV+G+AQTG+GKTAAF++P+L Sbjct: 14 TFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLS 73 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 +D K PQ LVL PTRELA+QVAEA + ++ +NV+ +YGG Y VQL LR+G Sbjct: 74 KIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGA 133 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 Q+VVGTPGR++DHL+R TLDLS++ LVLDEADEML MGF +DVE I+++ PE Q ALF Sbjct: 134 QVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVALF 193 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SATMP AIR+++ +++ +P EV ++ +ISQSY V RK +AL R LE E F+ Sbjct: 194 SATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQV--ARKMDALTRVLEVEPFE 251 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 A I+FVRTK AT E+AE L G+++AA++GD+ QA RE+T+ L+DG +DIL+ATDVAA Sbjct: 252 AMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAA 311 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RGLDVERIS V+NYDIP D+ESYVHRIGRTGRAGR+G AL+FV RE LL+ IE+ + Sbjct: 312 RGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKATRQ 371 Query: 367 TIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAA 426 T+ E +LP E + +R+ KFA + L ++ +R L+ + + ++ + +AA Sbjct: 372 TLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREH---DVPMADIAA 428 Query: 427 ALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDM 486 AL +G ++ PD P+ + + RD R D+ Sbjct: 429 ALAVQCRGGEAFLMAPDPPLSRRNRDQRRDRPQRPKRR-------------------PDL 469 Query: 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFT 546 YR+ VG+ + IVGAIANEG + G I++ S +ELP +P L+ Sbjct: 470 TTYRVAVGKRHKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLA 529 Query: 547 RTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGG 580 +TRI ++++ R G Sbjct: 530 QTRISGVLIDLRPYRPPDAARRHNGGKPRRKHVG 563 >UniRef50_Q0ST49 ATP-dependent RNA helicase, DEAD/DEAH box family n=23 Tax=cellular organisms RepID=Q0ST49_CLOPS Length = 528 Score = 653 bits (1686), Expect = 0.0, Method: Composition-based stats. Identities = 204/562 (36%), Positives = 314/562 (55%), Gaps = 44/562 (7%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F DLGLK +L+A+ D+G+E+PS IQAE IP L G D++G AQTG+GKTAAF ++ N Sbjct: 6 FDDLGLKESLLKAIKDMGFEEPSQIQAESIPVALEGHDIIGQAQTGTGKTAAFGCAIINN 65 Query: 68 LD--PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 D + K+P+ L+LAPTRELA+QV E + KH + ++V+ +YGGQ D Q+RAL+ G Sbjct: 66 ADFSGKKKSPKALILAPTRELAIQVNEELVRLGKHEK-LSVLPIYGGQPIDRQIRALKNG 124 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 IVVGTPGR+LD ++R +L L+ + LVLDEADEML MGFI+D+E I+ + QT L Sbjct: 125 VDIVVGTPGRVLDLIRRKSLPLNDIGFLVLDEADEMLNMGFIDDLEEIVKSLKTDRQTLL 184 Query: 186 FSATMPEAIRRITRRFMK-EPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 FSATMP I+++ R +MK + + + I+ S T I Q Y+ + + E L R L+ ++ Sbjct: 185 FSATMPPQIKKLARNYMKEDTKHIAIKKSSLTVSKIEQFYFEIKHRDRFETLCRVLDFDE 244 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 +AAIIF +TK EV E ++ GY ++GDM+Q R QTL + K+G LD L+ATDV Sbjct: 245 PNAAIIFCKTKKGVDEVVEKMQARGYMVEGMHGDMSQNHRLQTLRKFKEGSLDFLVATDV 304 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 AARG+DVE ++ V+NYD+P D+ESYVHRIGRTGRA R G A V +E +L+ I++ Sbjct: 305 AARGIDVESVTHVINYDLPQDNESYVHRIGRTGRANREGVAYSLVTPKEYMMLKQIQKHT 364 Query: 365 KLTIPEVELPNAELLGKRRLEKFAAKVQQQLES--SDLDQYRALLSKIQPTAEGEELDLE 422 K I +P + + + + V+ +E D ++ + +++ E+ L Sbjct: 365 KSKIIRKAVPTVDEIFQNKHNNIINNVKSTIEEASEDFQKFIPIATQL-----DEDYSLV 419 Query: 423 TLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRD 482 +AAALLK+ + + + Sbjct: 420 DVAAALLKIVFDKESSFDYTSNSIE---------------------------------AP 446 Query: 483 VGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVL 542 V D + VGR DG+ + +V + IS + +G+I + + + ++ Sbjct: 447 VMDETRLFMSVGRRDGITPKSLVNFLKETARISPKQVGDIDIKENFCFANVDADAVNNIM 506 Query: 543 QHFTRTRILNKPMNMQLLGDAQ 564 + ++ + +N+++ + Sbjct: 507 KKSMGKKLNKRTVNIEVAKKRK 528 >UniRef50_A8REA9 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8REA9_9FIRM Length = 572 Score = 651 bits (1679), Expect = 0.0, Method: Composition-based stats. Identities = 203/606 (33%), Positives = 325/606 (53%), Gaps = 38/606 (6%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 TTF +L + IL A++++GYE+ + IQA+ IP+++ G+DVLG + TG+GKTAAF +P + Sbjct: 2 TTFNELHISEAILRAVSEMGYEQATEIQAKAIPYIMEGKDVLGRSNTGTGKTAAFGIPAI 61 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 + + P+ K L++ PTREL QVA + FSK+ GV +V +YGGQ + Q++ L++G Sbjct: 62 EMVQPQDKYANALIICPTRELVTQVAMELRKFSKYKEGVKIVPIYGGQPIERQIQLLKRG 121 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH--QT 183 IVVGTPGR++DHL+R TL LS + ++LDEADEML MGF ED+E I++ +P QT Sbjct: 122 CGIVVGTPGRIMDHLRRRTLKLSDIRMVILDEADEMLNMGFKEDIEEILSLMPSERSYQT 181 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAE 243 LFSAT P I RI + F +P V I+S+ T + Q Y+ V +K AL L Sbjct: 182 ILFSATWPSEIMRIAKEFQNDPVTVEIKSAQRTIDTVEQLYYEVPRGKKANALRVLLNHY 241 Query: 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 303 D + +IF TK E+ L ++ + AL+GDM Q R + +E+ + G + ILIATD Sbjct: 242 DPELCMIFANTKKMVDELQGELNKHDIKACALHGDMKQEFRSRVMEQFRSGSMPILIATD 301 Query: 304 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVE-NRERRLLRNIER 362 VAARG+DV+ + LV+N+DIP D+E Y+HRIGRTGRAG+ G A+ + R+R L+NI R Sbjct: 302 VAARGIDVDDVDLVINFDIPQDNEYYIHRIGRTGRAGKKGLAITLISGGRQRSELKNIMR 361 Query: 363 TMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLE 422 K I LP + + + + V+ + D+ + +++ E + +E Sbjct: 362 YTKTNIKHHALPTSAQMQAHNRKAYIEGVKLACDEGVTDESMEIANELL----AEGIAVE 417 Query: 423 TLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRD 482 + +AL+ M + + + ++ + Sbjct: 418 NIISALISMTYKNEIIDIEEEEHVKRYAADFEA--------------------------- 450 Query: 483 VGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVL 542 + +G+ DGV+ +IV AI+ E ISS+ IG I + ++ S +++ VL Sbjct: 451 ----VTLKFSIGKQDGVKTGNIVAAISEECGISSKAIGRIDVRSNFSLVDVDAAKVDLVL 506 Query: 543 QHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERREGGRGDGR 602 + R I + +++++ + G+ + E+ R+ +R GR R Sbjct: 507 SNMQRAHIRGREVSVEIDHAPKRKNAGKEKNTRNKMKNEKNRKRRDERKKRNTTGREGKR 566 Query: 603 RFSGER 608 + + Sbjct: 567 KKVKKG 572 >UniRef50_A0Z0M4 ATP-dependent RNA helicase n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z0M4_9GAMM Length = 582 Score = 650 bits (1678), Expect = 0.0, Method: Composition-based stats. Identities = 244/580 (42%), Positives = 355/580 (61%), Gaps = 21/580 (3%) Query: 1 MAEFET---TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKT 57 M+ +T F LGL + E L LGYE +PIQA IP LL GRDV+G+AQTG+GKT Sbjct: 1 MSTPDTQPSRFNSLGLPDFLQENLQSLGYETATPIQAGTIPLLLEGRDVVGLAQTGTGKT 60 Query: 58 AAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDV 117 AAF+LP+L N+D ++++PQ LVL PTRELA QVAEA + + M G+ +++++GG Sbjct: 61 AAFALPILANIDVKVRSPQALVLCPTRELAQQVAEAFRSYGRGMGGLRILSIFGGADMRQ 120 Query: 118 QLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQI 177 QL++LR+G IVV TPGRLLDH++R ++DL+ ++ +VLDEADEMLRMGFI+DV+TI+A+ Sbjct: 121 QLKSLREGTHIVVATPGRLLDHIERRSIDLTGINAVVLDEADEMLRMGFIDDVDTILAKT 180 Query: 178 PEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALV 237 P+ + ALFSATMP+ +R I + + P E+ + ++ TT +I Q YW G K EAL Sbjct: 181 PKERKVALFSATMPKRVRDIANKHLSNPAEISVAAAATTNENIEQCYWLAKGASKLEALK 240 Query: 238 RFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLD 297 R L ED + I+F RT+ +T +AE L + G ++ LNGDM+Q +R +T+ LK G LD Sbjct: 241 RLLAFEDTEGVIVFTRTRESTTVIAEQLRQTGLKASPLNGDMDQKMRLRTVSDLKSGALD 300 Query: 298 ILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLL 357 +L+ATDVAARGLDVERI+ V+NYD+P D E+YVHRIGRTGRAGR G+A+LFV RERR+L Sbjct: 301 VLVATDVAARGLDVERITHVINYDVPFDEEAYVHRIGRTGRAGRKGKAILFVVPRERRML 360 Query: 358 RNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGE 417 RNIER + +IPE++LP+ + +R E FA ++ L + ++ + ++ Sbjct: 361 RNIERLTRQSIPEIKLPSVLAIDAKRREAFADSIRTALADPMQAELEEIIDTLNKDSDYR 420 Query: 418 EL------------DLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRND 465 + + A + T + +P R+ R + + ++ Sbjct: 421 SIAVALAGMLHSPGASKGPKHAKGEKHTPYGTRDARDEKSSKPNRKERRQGLQKKAATSE 480 Query: 466 RGPRG------DREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYI 519 + M+ +R+EVGR GV+ ++GAIANE I +YI Sbjct: 481 SETPSAPKNEKHLGEARPLRDHPDVPMERFRVEVGRKHGVKPGELMGAIANEAGIEGQYI 540 Query: 520 GNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQL 559 G I + STI+LP+G+P +L+H +TR+ + M Sbjct: 541 GMINILEECSTIDLPEGIPKSILKHLKKTRVKGVHLAMGR 580 >UniRef50_C0EAN9 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EAN9_9CLOT Length = 563 Score = 650 bits (1677), Expect = 0.0, Method: Composition-based stats. Identities = 216/589 (36%), Positives = 316/589 (53%), Gaps = 35/589 (5%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 FA L L +A+ +G++ + IQA+ IP + G DV+G +QTG+GKT AF +P ++ Sbjct: 6 FAQLNLSDETGQAIEAMGFDNATDIQAQSIPLIRAGYDVIGRSQTGTGKTVAFGVPAVEL 65 Query: 68 LDPE--LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 +D E Q+L+L PTRELAVQ + +K+ RGV V +YGG D Q+ L++G Sbjct: 66 IDTEELRNKTQVLILCPTRELAVQACSEIEKIAKYKRGVRAVDIYGGAPMDRQIMRLKRG 125 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 IVVGTPGR++DHL+R TL L L ++LDEADEML MGF EDVETI+ Q P+ QT L Sbjct: 126 ANIVVGTPGRVMDHLRRRTLKLDHLKMIILDEADEMLNMGFREDVETILKQTPDERQTIL 185 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSATMP AI +T+++ K+PQ + I T +I Q ++ V RK +AL L+ D Sbjct: 186 FSATMPPAILALTKQYQKDPQLIEINRKQVTLDNIEQQFYEVPMGRKMDALGIILQYHDP 245 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 +IIF TK EV L+R+GY++ L+GDM Q+ R + ++ K GR IL+ATDVA Sbjct: 246 ALSIIFCNTKRMVDEVTAFLDRSGYSAEGLHGDMKQSQRTKVMDSFKRGRTKILVATDVA 305 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVE-NRERRLLRNIERTM 364 ARG+DV + V+NYD+P + E YVHRIGRTGRAG+ G+A+ R+ L +I R Sbjct: 306 ARGIDVNNVDYVINYDVPQNQEYYVHRIGRTGRAGKEGKAVTICSGRRQVDELYHIVRMT 365 Query: 365 KLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETL 424 K TI LP+ + + +R E A+++Q+L +++ Y+ + ++ + T+ Sbjct: 366 KSTIKRESLPSGQDIERRSNEGVVARMEQKLAAAEELYYKEVAEELVQKG----YNPTTI 421 Query: 425 AAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVG 484 AA L+MA G P RPK + G Sbjct: 422 AAVALEMAFGRPKTDFPEIKQFRPKA---------------------------GLQGPRG 454 Query: 485 DMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQH 544 + I +GR++ + HIVGAI D+S R IG I+++ + + +P ++ Sbjct: 455 SFRKIEINIGRENHIAPNHIVGAITERSDLSGRDIGKIEIYDDKTIVAIPDSQIESTVKA 514 Query: 545 FTRTRILNKP-MNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGE 592 +I KP + + L G R GG RG+ R Sbjct: 515 MDGCKICGKPTVTVALKGGDTAKRPDYRPGGNRGYRPRNNRKPRTSRRG 563 >UniRef50_C8P265 DEAD/DEAH family ATP-dependent RNA helicase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P265_ERYRH Length = 594 Score = 647 bits (1671), Expect = 0.0, Method: Composition-based stats. Identities = 201/564 (35%), Positives = 309/564 (54%), Gaps = 36/564 (6%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 TF +L L+ I+ A+ + GYE+P+ IQ++ IP LL D+L +QTG+GKTAAF LP+L Sbjct: 17 MTFKELELEEEIVRAVTEKGYEEPTDIQSQAIPILLGNHDLLAQSQTGTGKTAAFGLPML 76 Query: 66 QNLDP-ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 P + K L+L PTREL +QVAE M FSK+ +GVN+ +YGG D Q+R L++ Sbjct: 77 SLTQPGDKKRTNSLILCPTRELCMQVAEEMRSFSKYKQGVNIACVYGGSPIDKQIRDLKR 136 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 G IVV TPGRL+DH++R T+ L +VLDEADEML MGFIED+E I + +PE Q A Sbjct: 137 GADIVVATPGRLMDHIRRKTIRLDDCRHIVLDEADEMLNMGFIEDIEEIFSFLPEERQFA 196 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 FSATMP+ I +++ +F+ EP+ + + + T I Q Y+TV K + ++ L+ Sbjct: 197 FFSATMPKEIVKLSEKFLVEPERITLSRNNLTVSRIKQIYYTVESRDKVDLTIQLLQLHK 256 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 +IF TK E+ L + G+ + L+GDM Q +R + R K G + +LIATDV Sbjct: 257 TSGTMIFCNTKKMVDELTTQLNKAGFPALGLHGDMKQEMRSMVMSRFKKGMVSVLIATDV 316 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 AARG+DV+ + +V+NYDIP + E YVHRIGRTGRAG+ G A+ V R+R ++ IER Sbjct: 317 AARGIDVDSMDVVINYDIPQELEYYVHRIGRTGRAGKEGLAITLVSRRQRYAIKQIERLS 376 Query: 365 KLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETL 424 TI E LP E L +++ A ++++ + + ++ E E + Sbjct: 377 NSTIVETPLPTKEQLNDLMVDQLAREIRKWNDHEQGKLFNIAYEGLR----NENFTQEEI 432 Query: 425 AAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVG 484 A + E L + +++ ++ G Sbjct: 433 IVAFINKMISESNLEA-------------------------------IKVSKQKDVKNKG 461 Query: 485 DMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQH 544 ++ + VG DG+ H+V AIA I + IG IK+ + ST+E+P+ +++ Sbjct: 462 EISRIGLSVGDRDGIAAAHLVSAIATASGIRGKDIGRIKIDDNESTVEVPREFAQDIINK 521 Query: 545 FTRTRILNKPMNMQLLGDAQPHTG 568 + T+I +K + + ++ + T Sbjct: 522 LSDTKINSKDVTVTMVDEFAQPTP 545 >UniRef50_Q8D2Y1 DeaD protein n=2 Tax=Enterobacteriaceae RepID=Q8D2Y1_WIGBR Length = 583 Score = 647 bits (1670), Expect = 0.0, Method: Composition-based stats. Identities = 314/594 (52%), Positives = 424/594 (71%), Gaps = 14/594 (2%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 M + E +F++LGLK IL ALNDLGY+KPSPIQ +CIP LL G DVLG+AQTGSGKTAAF Sbjct: 1 MNKKELSFSELGLKDFILLALNDLGYKKPSPIQEKCIPFLLKGYDVLGIAQTGSGKTAAF 60 Query: 61 SLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 LPLL N+D +LK PQI++L PTRELA+Q+ A SK+++ +N++ALYGGQ Y +Q++ Sbjct: 61 FLPLLNNIDLKLKLPQIIILTPTRELALQIKFACCSLSKYIKEINIIALYGGQNYSIQIK 120 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 +L++ PQIVVGTPGR+LD L + L+LS+++ VLDEADEMLRMGFIEDVE I + + Sbjct: 121 SLKRNPQIVVGTPGRILDLLNKKYLNLSEITSFVLDEADEMLRMGFIEDVENIFLKSSKQ 180 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 HQT LFSATMP AI RIT+RFMK+P+E+RI++S TRP+I Q+YW V+G+ K EAL+RFL Sbjct: 181 HQTILFSATMPAAIHRITKRFMKKPKEIRIKASENTRPNIKQNYWIVYGLCKIEALLRFL 240 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 E E FDA IIFVRTKNATLEV++ LE+NGYNS++LNGDMNQ LRE+TL R K G LDIL+ Sbjct: 241 EVEIFDAVIIFVRTKNATLEVSDVLEKNGYNSSSLNGDMNQILREKTLNRFKTGLLDILV 300 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATDVAARGLDV+RISLV+NYDIP+D ESY+HRIGRTGRAGR G+AL+FVENRER++L NI Sbjct: 301 ATDVAARGLDVDRISLVINYDIPLDVESYIHRIGRTGRAGRTGKALMFVENRERKILYNI 360 Query: 361 ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELD 420 ER +K + +++LP+ ELL K+RL F+ K++ Q+ S DL++Y+ LLSKI D Sbjct: 361 ERNIKEKLSQIKLPSVELLCKKRLNNFSEKIKNQINSLDLNKYQNLLSKIISFIGIS--D 418 Query: 421 LETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRER 480 ++ ++AALLK+AQ + LI+ PD + N + ++ + + Sbjct: 419 VKIISAALLKVAQKNKPLIISPDN-----------FFNKNKKINLLINKNNKRKKLNIIK 467 Query: 481 RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGE 540 + LY+ E+G+ DG+E +HIV + N G I S IG+IK+F ++STIE+ K +P Sbjct: 468 NKKKSISLYKAEIGKKDGIESKHIVRTMINLGKIKSNDIGSIKIFFNYSTIEIYKKIPLN 527 Query: 541 VLQHFTRTRILNKPMNMQLLG-DAQPHTGGERRGGGRGFGGERREGGRNFSGER 593 +L +++ I K +N++LL + ++ G R + S R Sbjct: 528 LLSILSKSTIFKKSLNLKLLNHNKISKKPILKKIGSRLSNRISKNTSNKISYNR 581 >UniRef50_Q725W5 ATP-dependent RNA helicase, DEAD/DEAH family n=3 Tax=Desulfovibrio vulgaris RepID=Q725W5_DESVH Length = 532 Score = 647 bits (1670), Expect = 0.0, Method: Composition-based stats. Identities = 222/568 (39%), Positives = 319/568 (56%), Gaps = 37/568 (6%) Query: 3 EFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSL 62 E +F DL L+ +L+A+ +LG+ +PSPIQ+ IP LL GRDV+G AQTG+GKTAAF L Sbjct: 2 ESVESFKDLPLEEELLKAIEELGFTEPSPIQSIAIPRLLEGRDVIGQAQTGTGKTAAFGL 61 Query: 63 PLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 PLLQ +D ++ Q LVL PTRELA+QVA +T +KH+RGV ++++YGGQ + Q AL Sbjct: 62 PLLQRIDAADRSVQALVLCPTRELALQVANGLTALAKHLRGVRILSVYGGQPIEPQASAL 121 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 R+G Q+VVGTPGR+LDH+ RGTL L + VLDEADEML MGF ED+E I++++PE Q Sbjct: 122 RRGAQVVVGTPGRILDHINRGTLQLGVVRMTVLDEADEMLDMGFREDIERILSEMPEWVQ 181 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 +A FSATMP+ I + RRF++EP+ +R+ T + Q+++ V R+ +A+ R +A Sbjct: 182 SAFFSATMPDGILELARRFLREPELLRVTRRQLTVANTEQAWFEVRPFRRVDAVCRIFDA 241 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 AI+F TK E+A AL++ G + AL+GD+NQ RE+ + R + G + +L+AT Sbjct: 242 YIPRKAIVFRATKQGVDELAAALQQRGILADALHGDLNQTQRERVMSRFRAGGISVLVAT 301 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 DVAARGLDV+ + V+N+D+P D E+YVHRIGRTGRAGR GRA F R+ LR+I+R Sbjct: 302 DVAARGLDVDDVDTVINFDLPNDPETYVHRIGRTGRAGRTGRAFSFAAGRDVYKLRDIQR 361 Query: 363 TMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLE 422 I +P A + R + +V L S++ ++ K+ E D Sbjct: 362 VTGSRIDRRAMPTAADASRARTGQLLEEVAAGLASAETSACLPVVEKLI----AEGADPT 417 Query: 423 TLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRD 482 LAA LL+M + +P R Sbjct: 418 QLAATLLRMIMQRDRIDLPGARQTDDIGTGR----------------------------- 448 Query: 483 VGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVL 542 VGR + R +VGAIA E IS R IG+I++ S +E+ + EV+ Sbjct: 449 ----VRLFFNVGRRMRITPRDLVGAIAGETGISGRSIGSIEIHDRFSFVEVDASIAPEVV 504 Query: 543 QHFTRTRILNKPMNMQLLGDAQPHTGGE 570 +I + ++ + Sbjct: 505 SVMHGNQIRGFRLAVEQASPREGQDRAA 532 >UniRef50_B9Y818 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y818_9FIRM Length = 556 Score = 646 bits (1667), Expect = 0.0, Method: Composition-based stats. Identities = 201/577 (34%), Positives = 313/577 (54%), Gaps = 36/577 (6%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 F +L L + A+ D GY + + IQ+ CIP ++NG DV+G +QTG+GKTAAF++P++ Sbjct: 1 MKFNELNLSPEMSRAIADCGYTEATYIQSACIPVVMNGGDVIGQSQTGTGKTAAFAIPII 60 Query: 66 QNLD-PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 + L+ + K PQ L+L+PTRELA+QV + + F+K+ G+ VA+YGGQ+ Q+ L++ Sbjct: 61 EMLEVTDRKRPQALILSPTRELAMQVCDEIRKFTKYKEGIRTVAVYGGQQISKQILELKK 120 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 G IVVGTPGR+LDH++R TL + LVLDEADEML MGF ED+ET++ +P+ QT Sbjct: 121 GADIVVGTPGRVLDHIRRRTLRFDQCRVLVLDEADEMLNMGFREDIETVIEALPQQRQTV 180 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 LFSATMP+ I IT ++ P ++ + P I Q Y+ K E L++ + ++ Sbjct: 181 LFSATMPKPILEITSQYQTNPVHIKTPQTQINTPKIEQVYYVCPKEAKKEILMQLISMQN 240 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 A+IF TK E+ L GY +AAL+GDM Q +R ++ K G+++IL+ATDV Sbjct: 241 PHLAMIFCNTKKMVDELTSDLVSKGYPAAALHGDMKQEMRTGVMDNFKKGKINILVATDV 300 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 AARG+DV+ + +V NYD+P +SE YVHRIGRTGRAG+ G A+ + R++ LR++ERT Sbjct: 301 AARGIDVDSMDVVFNYDLPQESEYYVHRIGRTGRAGKEGLAVTLITARQKYALRDLERTT 360 Query: 365 KLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETL 424 + + + LP+ E + K RL+ ++ ++ + A++ + + + + Sbjct: 361 RSKLTQKPLPSLEEVRKIRLDFLREDLEHRMTRDVPEPLAAIIDTM----KDDGYSYREM 416 Query: 425 AAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVG 484 A AL G + RP + G Sbjct: 417 ALALAYQIAGHEMFDESA---------------------------WNASARPALTVTEKG 449 Query: 485 DMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQH 544 M +++G D V IV AIA + + IG I++ A +T+++P+ E+ Sbjct: 450 -MSELILDIGSDQDVSAAIIVSAIATATGLPGKDIGKIRISAQETTVQIPRQFDREIADA 508 Query: 545 FTRTRILN---KPMNMQLLGDAQPHTGGERRGGGRGF 578 T I P+ M G + +RR +G Sbjct: 509 MKNTPIKGQTVHPLLMVRKGKDYSNLPPKRRAASKGP 545 >UniRef50_Q46G62 ATP-dependent RNA helicase n=7 Tax=cellular organisms RepID=Q46G62_METBF Length = 579 Score = 645 bits (1665), Expect = 0.0, Method: Composition-based stats. Identities = 199/626 (31%), Positives = 317/626 (50%), Gaps = 50/626 (7%) Query: 3 EFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGR-DVLGMAQTGSGKTAAFS 61 E F LGL +L+AL G+E+P+PIQ + IP L G D++G AQTG+GKT AF Sbjct: 2 EKLAKFKALGLSDSMLKALKKKGFEEPTPIQEKVIPLFLKGECDIIGQAQTGTGKTTAFG 61 Query: 62 LPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 P+++ + + Q +VL PTRELA+QV+E + K + +++V +YGGQ Q R Sbjct: 62 APIIEKIPEKSGKVQAIVLTPTRELAIQVSEELNSL-KGDKKLHIVPIYGGQSMTQQFRM 120 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 L+ G IVVGTPGR++DHL+R +L+L ++ VLDEADEML MGFI+D++ I+ Sbjct: 121 LKSGVDIVVGTPGRVIDHLERKSLNLENIAYFVLDEADEMLNMGFIDDIKEILKATGPDK 180 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 + FSATMP+ I I ++ MK + V I+ Q Y+ V K EAL R ++ Sbjct: 181 RMLFFSATMPKPILGIIKKHMKNYEYVAIKKEDLDVNLTEQIYFEVKESDKFEALCRIID 240 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 ED ++F RTK T ++A+ L GY + AL+GD++Q RE+ L R + +++IL+A Sbjct: 241 IEDEFYGLVFCRTKTDTSQLAQKLGDRGYAADALHGDLSQREREKILNRFRKQKINILVA 300 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 TDVAARG+D+ ++ V+NY +P D ESYVHRIGRTGRAG+ G A+ FV + E R L I+ Sbjct: 301 TDVAARGIDIMDLTHVINYSLPQDPESYVHRIGRTGRAGKQGTAITFVTSTEYRRLTYIK 360 Query: 362 RTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDL 421 +T K + +P + + K + + A++++ +++ + + K EE Sbjct: 361 KTSKSAMKRGRIPEIKDVIKAKRARVKAELEETIKNEEYGDCLEMSEKFL-----EEYPA 415 Query: 422 ETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERR 481 E + AALLK + E D + +R+ Sbjct: 416 EKILAALLKYSFKEM---------------------------FDESMYTEISGSSYVDRK 448 Query: 482 DVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEV 541 I +G+ DG+ + I E +S I + ++F S + +P + Sbjct: 449 GK---TRLFIAMGKADGMTPEKLCEFIQEETGVSDLKIRDAEIFPHFSFVTVPFAQASAL 505 Query: 542 LQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERREGGRGDG 601 L+ F + + ++L ++ + G R G R++S G + Sbjct: 506 LEIFKDKK-RGRKPFIELAQKSKRR----SSKSADEYRGGTRNGSRSYSRNDSWNGSRNT 560 Query: 602 RRFSGERREGRAPRRDDSTGRRRFGG 627 ++ RD T ++++ Sbjct: 561 NS--------KSYTRDTRTAKKKYSS 578 >UniRef50_B9ZPI5 DEAD/DEAH box helicase domain protein n=2 Tax=Bacteria RepID=B9ZPI5_9GAMM Length = 627 Score = 642 bits (1658), Expect = 0.0, Method: Composition-based stats. Identities = 275/627 (43%), Positives = 366/627 (58%), Gaps = 13/627 (2%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 M+E +FA+LGL + AL LG+ P+P+QA CIP LL G DVLG AQTG+GKT AF Sbjct: 1 MSE-SPSFAELGLSESLARALLQLGFTTPTPVQAACIPALLAGDDVLGEAQTGTGKTGAF 59 Query: 61 SLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 LPL+ ++DP + Q L+LAPTRELA QVA A+ F+ + G+ ++ +YGGQ VQ+R Sbjct: 60 GLPLIDSIDPAQRRVQALILAPTRELAGQVATALEGFAASIDGLEILPVYGGQPMGVQIR 119 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 ALR G Q+VVGTPGR++DH+KRGTL L L +VLDEADEMLRMGF+E++E I+ Q P Sbjct: 120 ALRDGAQVVVGTPGRVVDHIKRGTLTLDALRMVVLDEADEMLRMGFVEEIEWILEQTPAE 179 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 QT LFSATMP IRRI R M+EPQE+RI + DI QSY V K EAL R + Sbjct: 180 RQTTLFSATMPAPIRRIAHRHMREPQEIRIGAGNEAGTDIDQSYCLVDQRHKTEALGRMI 239 Query: 241 EAEDF-DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299 E E DAAI+F RTK AT E+AEAL G S+ LNGDM Q RE+ + L+DGRLD++ Sbjct: 240 EVEAGLDAAIVFARTKAATAEIAEALNAQGVQSSPLNGDMEQGERERVVADLRDGRLDVI 299 Query: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359 +ATDVAARG+DV RI+ V NYD P D+E YVHRIGRTGRAGR GRA+LF+E R+RR+LR+ Sbjct: 300 VATDVAARGIDVPRITHVFNYDAPGDAEVYVHRIGRTGRAGRKGRAILFLEPRKRRMLRD 359 Query: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEL 419 IER + E ++P+ + RR E+ A ++Q +L Q ALL ++ + E Sbjct: 360 IERLTGKPVREQKVPDRAAVIARREERLAERLQAELAGEASPQLDALLDRLLANGQMGER 419 Query: 420 DLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRE 479 DL AL P+ +RD DR PR R + Sbjct: 420 DLARALLALATQGTPLDGTP-NAHDPVTAAASRPERDSHRADRNRDRAPRPSRGK----D 474 Query: 480 RRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPG 539 R DM Y + VGR+ G+ IVGA+ANEG ++ R IG I L HS ++LP + Sbjct: 475 RGPEADMVRYYMPVGRNHGIAPGAIVGALANEGGLNGRDIGRIGLQDDHSHVDLPAALDE 534 Query: 540 EVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERREGGRG 599 ++ + N+ + M + ER + G + +RR Sbjct: 535 AAVRRLGNIHVANRRLEMARSVPTRDSRATERHAP----AARKPRGPGKPAAKRRGPAPA 590 Query: 600 DGRR--FSGERREGRAPRRDDSTGRRR 624 +G+R ++ + +AP R + R Sbjct: 591 NGKRPAYAAAGKPRKAPSRKAADSRGD 617 >UniRef50_B0U160 DEAD-box subfamily ATP-dependent helicase n=18 Tax=Francisella RepID=B0U160_FRAP2 Length = 581 Score = 642 bits (1657), Expect = 0.0, Method: Composition-based stats. Identities = 236/577 (40%), Positives = 358/577 (62%), Gaps = 20/577 (3%) Query: 2 AEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFS 61 +E + F+ LGL I++ + LGYE P+PIQ IP++L+GRDVLG AQTG+GKTAAF+ Sbjct: 3 SETKKDFSQLGLNQDIIDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFA 62 Query: 62 LPLLQN--LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119 LPL+ N L+ +APQ+LVLAPTRELA+QVAE F+K++ ++V +YGGQ Y Q+ Sbjct: 63 LPLINNMDLESRDRAPQVLVLAPTRELAIQVAEQFQAFAKNIPNLDVACIYGGQEYGSQI 122 Query: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179 RAL+QG ++VVGT GR++DH+++GTL L L LVLDEADEMLRMGFI+DV +++ + + Sbjct: 123 RALKQGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVRYVLSHVSD 182 Query: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239 Q LFSAT+P I I + +++ P ++++++ T ++Q + + G RK +AL R Sbjct: 183 ECQRLLFSATIPTDIADIIQEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRL 242 Query: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299 LE E+ D IIFV+TK +T+EVA+ L+ GY AA+NGDM Q+ RE +++ + + D+L Sbjct: 243 LEVEETDGVIIFVKTKTSTIEVADNLKALGYRVAAINGDMQQSQREYIVDQFRSAKSDVL 302 Query: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359 +ATDV ARG+D+ERIS V+NYD+P DS++YVHRIGRTGRAGR G ++ V +E R LR Sbjct: 303 VATDVVARGIDLERISHVINYDMPNDSDTYVHRIGRTGRAGREGISISLVPLKEMRFLRT 362 Query: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQL-ESSDLDQYRALLSKIQPTAEGEE 418 +ER + EV +P+A+ L + R++ F ++ L ++ LD Y+ +++ I+ E + Sbjct: 363 LERFTGSPMQEVFMPSAKDLAQSRIDHFKTRIASALDKNKSLDNYKEIITSIRDELELDS 422 Query: 419 LDLETLAAALLKMAQGERTLIVPPDAPMRPK-----------------REFRDRDDRGPR 461 +L + L + + + + DR DR R Sbjct: 423 DELLAVLTLLAQGKKSFFPREIQARDDRPQRDRNLRGNSRDGGRNDRFERRGDRSDRNSR 482 Query: 462 DRNDRGPRGDREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGN 521 + R D+ Y++EVGRD+ V+ R+IVGAIANEG+I S++I N Sbjct: 483 FDRSDKFDRSDRSDRKPRRAVNIDLTTYKLEVGRDNDVQPRNIVGAIANEGNIDSKHICN 542 Query: 522 IKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQ 558 I + H+ ++LP + +V+ H + K +N+ Sbjct: 543 ISIQKDHTLVDLPANLSPKVISHLRNVWVAGKKLNLT 579 >UniRef50_D0WN23 ATP-dependent RNA helicase DeaD n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WN23_9ACTO Length = 767 Score = 640 bits (1652), Expect = 0.0, Method: Composition-based stats. Identities = 243/639 (38%), Positives = 343/639 (53%), Gaps = 36/639 (5%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 + + F DLGL +L A+ +LG+ P+ IQA IP LL GRDV+G+AQTG+GKTAAF Sbjct: 122 VNSSDVLFDDLGLPEDLLSAVKELGFSAPTAIQAAAIPILLRGRDVVGVAQTGTGKTAAF 181 Query: 61 SLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 +LPLL ++DPE + Q LVLAPTRELA+Q A+A+ F+ RGV+V A+YGG Y QL+ Sbjct: 182 ALPLLAHIDPEKREVQALVLAPTRELAMQGAQAIESFAAKSRGVDVAAVYGGSSYLPQLK 241 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 AL G Q+VVGTPGR++D + RG L L + VLDEADEMLRMGF EDVE I +++PEG Sbjct: 242 ALEGGAQVVVGTPGRIMDLMDRGALRLDAVRYFVLDEADEMLRMGFAEDVEKIASEVPEG 301 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 +ALFSATMP IRR+ R + + +EV I TT + Q Y V K AL R L Sbjct: 302 RISALFSATMPPPIRRVAERHLSDAEEVTISRPATTVSTVKQMYAVVPERHKIGALARVL 361 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 + AA++FVRT++ ++ L G +AAL+GD+ Q RE+ + RL+DG LD+L+ Sbjct: 362 AVTEAQAALVFVRTRSTAEDLTIELGARGVATAALSGDVVQKEREKLVARLRDGTLDVLV 421 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATDVAARGLDV+RI LVVN+D+P ++++YVHRIGRTGRAGR G ++ FV +ER LR I Sbjct: 422 ATDVAARGLDVDRIGLVVNFDVPRETDTYVHRIGRTGRAGRTGESITFVTPKERPRLRRI 481 Query: 361 ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELD 420 E+ + ++ELP + K R + + ++ L Y +L Sbjct: 482 EKQTGSRMEQIELPTPAEVSKLRARRTVEQAMARVAKGRLWVYEEILEDFVAEQAKAAAQ 541 Query: 421 LETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRD------------------ 462 + A + P + +D GP Sbjct: 542 SGSGAHLDSHEHGSDSYSQHDSHPLSDPGSQLDSKDQAGPVSLETLTMALLALAVRDPGP 601 Query: 463 ----------RNDRGPRGDREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEG 512 + R R + R+ RR + + YR+EVG D V+ IVGA+ +EG Sbjct: 602 VAGEEPERLTEDFGSEREGRPRKERQPRRQMKNSVRYRVEVGHKDRVKPGAIVGALTHEG 661 Query: 513 DISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERR 572 +S +G+I +F + S +E+ + E + ++ R+ + + + GG R Sbjct: 662 GLSGSDLGHIDIFPTFSLVEIGVPLSPEARKRISQARVSGRALKISEDRGP----GGFRD 717 Query: 573 GGGRGFGGERREGGRNFSGERREGGRGDGRRFSGERREG 611 GRG R ++S R G R R E Sbjct: 718 DAGRG----RPRRDSDYSDRGRSRGDRGSRYDRTTRDER 752 >UniRef50_A5FH88 DEAD/DEAH box helicase domain protein n=21 Tax=Bacteroidetes RepID=A5FH88_FLAJ1 Length = 634 Score = 640 bits (1652), Expect = 0.0, Method: Composition-based stats. Identities = 199/644 (30%), Positives = 327/644 (50%), Gaps = 50/644 (7%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNG-RDVLGMAQTGSGKTAAFSLPL 64 F LGL +L+A+ DLG+E PS +Q + IP LL D++ +AQTG+GKTAAF PL Sbjct: 2 NKFEQLGLNESLLKAILDLGFENPSEVQEKAIPLLLEKDTDMVALAQTGTGKTAAFGFPL 61 Query: 65 LQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 +Q +D + + Q LVL+PTREL +Q+ + ++SK+ +G+NVVA+YGG Q R +++ Sbjct: 62 IQKIDADNRNTQALVLSPTRELCLQITNELKNYSKYEKGINVVAVYGGASITEQAREIKR 121 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 G QI+V TPGR+ D + RG +++ + +LDEADEML MGF ED+ +I++ P+ T Sbjct: 122 GAQIIVATPGRMQDMINRGLVNIKNIDYCILDEADEMLNMGFYEDIVSILSDTPDQKNTW 181 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 LFSATMP+ + RI ++FM EP E+ + + + +S ++ V + EAL R +A Sbjct: 182 LFSATMPQEVARIAKQFMSEPVEITVGAKNSGSATVSHEFYLVNARDRYEALKRLADANP 241 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 +++F RTK T VAE L +GY++AAL+GD++QA R+ ++ + ++ +L+ATDV Sbjct: 242 DIFSVVFCRTKRDTQAVAEKLIEDGYSAAALHGDLSQAQRDGVMKSFRGRQIQMLVATDV 301 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 AARG+DV+ ++ VVNY +P + E+Y HR GRTGRAG+ G +++ V E R + +IER + Sbjct: 302 AARGIDVDNVTHVVNYQLPDEIETYNHRSGRTGRAGKLGTSIVIVTKSELRKISSIERII 361 Query: 365 KLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETL 424 K E +P+ + + +L A K++ ++D Y ++ + EEL + + Sbjct: 362 KQKFEEKAIPSGIEICEIQLLHLANKIKDTEVDHEIDNYLPAINNVLEDLSKEELIKKMV 421 Query: 425 AAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVG 484 + + + D + E R+R D PR+ N+ G Sbjct: 422 SVEFNRFITYYKK---NRDISTQSSGERRERGDSEPREFNNNGA---------------- 462 Query: 485 DMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQH 544 Y + +G D + + + D+ + + + S +V+ Sbjct: 463 --VRYFVNIGSRDNFDWMSLKDYLKETLDLGRDDVFKVDVKEGFSFFNTDPEHTDKVMDI 520 Query: 545 FTRTRILNKPMNMQLLGDA---------------------------QPHTGGERRGGGRG 577 ++ + +N+++ + + G R Sbjct: 521 LNNVQLEGRRINVEISKNDGGGRRDHNNRGGGRNSGGQRREGNFAPRREGSGGGFRSDRN 580 Query: 578 FGGERREGGRNFSGERREGGRGDGRRFSGERREGRAPRRDDSTG 621 R G F +R R G R + E RAPRR +S G Sbjct: 581 SAPRREGSGGGFRSDRNSAPREGGFRRN-EGGSDRAPRRSESFG 623 >UniRef50_Q6AMK6 Probable ATP-dependent RNA helicase n=1 Tax=Desulfotalea psychrophila RepID=Q6AMK6_DESPS Length = 632 Score = 639 bits (1650), Expect = 0.0, Method: Composition-based stats. Identities = 229/579 (39%), Positives = 331/579 (57%), Gaps = 33/579 (5%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F D LK+ ++ L LG+ +P+PIQ + IP LL G D++G AQTG+GKTAAF LPLL N Sbjct: 57 FTDFNLKSDLVANLVKLGFSQPTPIQEKAIPLLLAGSDLIGQAQTGTGKTAAFGLPLLNN 116 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 +D K Q LVLAPTRELA QV +A+ +S G NV+ +YGG Y Q+ LR+G + Sbjct: 117 IDFSKKCVQALVLAPTRELAQQVGDALATYS-GDDGRNVLVVYGGSSYQAQVGGLRRGAR 175 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 +VVGTPGRLLD +++G+L L +L LVLDEADEML MGFI+D+ETI++Q P+ QT LFS Sbjct: 176 VVVGTPGRLLDLIRQGSLKLDQLKTLVLDEADEMLSMGFIDDIETILSQTPKDRQTMLFS 235 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 AT+ + I R++ P+ + I I Q Y+ + K A+ R E E ++ Sbjct: 236 ATLSSRVMSIANRYLHSPESISISPKQMIGSSIEQRYYLINNSDKIAAITRVFEVETVES 295 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 A+IF RT+ E+A L G+ + L+GD++Q R + L R K G++ +L+ATDVAAR Sbjct: 296 ALIFARTRATVSELANELISRGFAAEGLSGDLSQEARTRVLSRFKKGQIKVLVATDVAAR 355 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 GLD++ IS V NYD+P D E YVHRIGRTGRAGR+G A+ V R+R + R IE+ Sbjct: 356 GLDIDDISHVFNYDLPEDPEVYVHRIGRTGRAGRSGTAISLVTLRDRWMHRRIEQYTGKK 415 Query: 368 IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAA 427 + + ELP E + + R +F ++ + R ++ + +D +AAA Sbjct: 416 LIKGELPTVEQIEEHRNTQFLERLDVWIRRGRCRGEREIVEALVEQG----MDPLDVAAA 471 Query: 428 LLKMAQGE------RTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERR 481 LK+ + + + + R+ DR+DRG R DRG R D + RR Sbjct: 472 ALKIVRKDETKRPIDPIKPVIEDAGGRNRKRGDRNDRGANGRGDRGGRSDSRGGRPQGRR 531 Query: 482 D----------------------VGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYI 519 D DM ++ G+ DGV V HIV ++++ ISSR + Sbjct: 532 DDRFAKGGDRGPKKKGDDVRQVSDKDMVPLTLDAGKKDGVAVNHIVASLSHFAGISSREL 591 Query: 520 GNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQ 558 G I++ +HS+I++PKG+ ++L H RI K +N+ Sbjct: 592 GKIRINETHSSIDVPKGLVDKMLSHNGSYRISKKAVNLT 630 >UniRef50_Q484Q1 RNA helicase DeaD n=1 Tax=Colwellia psychrerythraea 34H RepID=Q484Q1_COLP3 Length = 611 Score = 639 bits (1648), Expect = 0.0, Method: Composition-based stats. Identities = 269/607 (44%), Positives = 370/607 (60%), Gaps = 29/607 (4%) Query: 1 MAEFE-TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAA 59 + E E FA LGL +L A+ +G+ + IQA IP LL G+DVLG AQTG+GKTAA Sbjct: 9 VTEPEAVAFASLGLPENLLSAVLSIGFTSATDIQALTIPPLLAGKDVLGEAQTGTGKTAA 68 Query: 60 FSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119 F LP L +D +K PQ++VLAPTRELA+QVAEA+ F K M+G+ V LYGGQ Y Q Sbjct: 69 FGLPALAKIDTSIKKPQLMVLAPTRELAMQVAEAIESFGKDMKGLRVATLYGGQSYGPQF 128 Query: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179 + L +G Q+VVGTPGRL+DHL+R +L L +L VLDEADEML MGF+ED++ I+ IP+ Sbjct: 129 QQLERGAQVVVGTPGRLMDHLRRKSLKLDELRVCVLDEADEMLNMGFLEDIQWILDHIPK 188 Query: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239 Q LFSATMP AIR+I RF+K+P+ +++ + + +I+Q W V G+ K AL R Sbjct: 189 TAQMCLFSATMPPAIRKIANRFLKDPEHIKVAAVKKAKANITQYAWKVSGITKMTALERI 248 Query: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299 E ++DA IIFVRT+N T+++AE LER GY + ALNGD+NQA RE+ ++++K G+ IL Sbjct: 249 AEVVEYDAMIIFVRTRNDTVDIAEKLERAGYPALALNGDLNQAQRERCIDQMKSGKSSIL 308 Query: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359 +ATDV ARGLD+ RISLV+NYD+P D+E+YVHRIGRTGRAGR G ++ FV RE +R+ Sbjct: 309 VATDVVARGLDIPRISLVINYDLPGDNEAYVHRIGRTGRAGREGMSIAFVRPREMYSIRH 368 Query: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEL 419 ER T+ +LPN + +GK R+E+ +V + + D+ R ++ + A E+ Sbjct: 369 YERLTNGTVLNYDLPNIQDIGKIRIERTRVEVAKIVADKDISSMREIVEGM---AAESEV 425 Query: 420 DLETLAAALLKMAQGERTLIVPPDA-PMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRR 478 + LAAALL Q ++ L D P R RE DR+DRG + R R + R Sbjct: 426 SMIDLAAALLFQKQMKQPLQPKEDPKPRRDARERTDRNDRGNDRNSRGNDRNSRGNDSRS 485 Query: 479 ERRDVG----------------------DMQLYRIEVGRDDGVEVRHIVGAIANEGDISS 516 RD D Q YR+EVG++ G IVGAIANE + S Sbjct: 486 AGRDSRGGENRSNRDEKPRKAKVNRSDVDWQTYRLEVGKEHGARPGDIVGAIANEISLDS 545 Query: 517 RYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGR 576 YIG I L HS ++LPKG+P ++ R+ +P+++ +A ++R R Sbjct: 546 SYIGAINLHDKHSFVQLPKGIPTDLFNQLKGVRVRRQPLSITTSDEAVVSQ--QQRPARR 603 Query: 577 GFGGERR 583 R Sbjct: 604 TEKAPRH 610 >UniRef50_D1BSR4 DEAD/DEAH box helicase domain protein n=5 Tax=Actinomycetales RepID=D1BSR4_XYLCX Length = 712 Score = 638 bits (1647), Expect = 0.0, Method: Composition-based stats. Identities = 258/648 (39%), Positives = 348/648 (53%), Gaps = 29/648 (4%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 E F LGL A + A+ DLG+ PS IQA+ IP LL GRD+ G+AQTG+GKTAAF LP Sbjct: 47 VEPGFDTLGLPATLEAAVADLGFTTPSAIQAQAIPALLGGRDITGVAQTGTGKTAAFGLP 106 Query: 64 LLQNLDPELKA---PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 LL +++ Q LVL PTRELA+QVAEA+ F+ H+ V V+++YGG Y Q R Sbjct: 107 LLASVEAHRGTRPTVQALVLTPTRELAMQVAEAIESFASHLPDVRVLSVYGGSPYVPQQR 166 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 ALR G +VVGTPGR++DHL+RG L L LVLDEADEMLRMGF EDVE I + P Sbjct: 167 ALRDGVHVVVGTPGRVIDHLERGGLVLDDARFLVLDEADEMLRMGFAEDVEKIFSYAPTQ 226 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 Q ALFSATMP AIR I + +P E+ + +T + Q Y V K AL R L Sbjct: 227 RQVALFSATMPPAIRAIADTHLNDPVEIAVARQSSTVASVHQGYAIVPFRHKVGALTRIL 286 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 D DA+I+F RT++A EV AL G ++A ++GD+ Q RE+ +ERL+ G LD+L+ Sbjct: 287 ATSDADASIVFTRTRSAAEEVGAALIEKGISAATISGDVAQKEREKIVERLRSGALDVLV 346 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATDVAARGLDV+RI LVVN+DIP ++E+YVHRIGRTGRAGR GRA+ FV ER L+ I Sbjct: 347 ATDVAARGLDVDRIGLVVNFDIPREAEAYVHRIGRTGRAGRTGRAVSFVTPHERGKLKFI 406 Query: 361 ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELD 420 E T+K+++ E+++P+ + R + + ++ LD Y+ L+ + T +GEE Sbjct: 407 ENTIKVSLEEIDIPSPRDVSAHRAARLLDSAPARTQAGRLDLYKQLVRNLVTTGDGEEAG 466 Query: 421 LETLAAALL--------------KMAQGERTLIVPPDAPMRPKREFR--------DRDDR 458 + A+ A+ E+ A R R+ R DR R Sbjct: 467 VVDPTKAVDLAATLLALAVGDDGPRARAEQEEYEREQAEGRAARQARETRKHEIGDRGAR 526 Query: 459 GPRDRNDRGPRGDREDRPRRER--RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISS 516 G R + D R R YR+ VG DGV IVGAI EG ++ Sbjct: 527 GDRFGDRDRRPARDGDDRSHTRGIRRPAAGTRYRVAVGHKDGVNPGGIVGAITGEGGLTG 586 Query: 517 RYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGR 576 +G I +F S S +++ + G L +R R+ + + + + A T R Sbjct: 587 ADVGKIDIFGSFSLVDITAPLDGAQLDRLSRARVAGRALRLTVDRGAPEGTRSYDRPARA 646 Query: 577 GFGGERREGGRNFSGERREGGRGDGRRFSGERREGRAPRRDDSTGRRR 624 R+ ER + R ER + P R D R Sbjct: 647 ERFDRSDRPVRSDRYERGDASDRPARSDRFERADR--PARTDRYERSD 692 >UniRef50_Q31AC4 DEAD/DEAH box helicase-like protein n=9 Tax=Prochlorococcus marinus RepID=Q31AC4_PROM9 Length = 593 Score = 637 bits (1645), Expect = 0.0, Method: Composition-based stats. Identities = 230/554 (41%), Positives = 336/554 (60%), Gaps = 10/554 (1%) Query: 2 AEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFS 61 + E F D G IL +L++ GY+ P+PIQ IP L+ GRD+LG AQTG+GKTAAF+ Sbjct: 47 NDNENGFLDFGFNQSILNSLSNKGYKNPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFA 106 Query: 62 LPLLQNLDPELK-APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 LPL++ L + ++LV+ PTRELA QVAE+ +S +A+YGG Y Q+ Sbjct: 107 LPLIEKLADNKELNAKVLVMTPTRELATQVAESFKSYSSESTNFKTIAIYGGTDYRNQIY 166 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 AL++ +VVGTPGR++DH+++GT ++ ++ LVLDEADEML MGF+ED+E I+ Q+P+ Sbjct: 167 ALKRKVDVVVGTPGRIMDHIRQGTFKVNSINCLVLDEADEMLNMGFLEDIEWIIDQLPKN 226 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 Q LFSATMP IR I ++++ +P E+ I+S ISQ + V K +AL R L Sbjct: 227 KQMVLFSATMPNEIRNIAKKYLNDPAEILIKSVKKETQLISQKFLYVQRHHKLDALKRIL 286 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 E + IIFVRTK T +AEALE G++ A LNGD+ Q RE T++RLK G +DIL+ Sbjct: 287 ELNNEG-VIIFVRTKLLTTSIAEALENLGHSVAVLNGDIPQNQRENTVDRLKKGFIDILV 345 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATDVAARGLDVERI LVVNYD P D E+Y HRIGRTGRAGR+G A+LFV +RE+ LRN+ Sbjct: 346 ATDVAARGLDVERIKLVVNYDFPFDKETYTHRIGRTGRAGRSGEAILFVNHREKHFLRNL 405 Query: 361 ERTMKLTIPEVELPNAELLGKRRLEKFAAKV-QQQLESSDLDQYRAL-LSKIQPTAEGEE 418 E + + I E+ +P+ +++ ++R+EK V + L D ++ +AL + + E Sbjct: 406 ENSTRTKIEEINIPSNKIINEKRMEKLIENVNESSLAKEDNEENKALIIDVLDNLKEKHS 465 Query: 419 LDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRR 478 +D +A A + + G + V D K+ DR+ N R + Sbjct: 466 MDDSNIAMAAINLVIGNKAFFVNEDDSWIHKQNNTDRNRSNRNGNNRMRNSNRRNNF--- 522 Query: 479 ERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMP 538 + Y+ + G+ DGV V +I+ +I N +I+ R IG I++F +S ++LP+ + Sbjct: 523 ---QNDSFETYKFDFGKFDGVRVANIISSICNSTNINGRSIGKIQIFNDYSLVDLPRDLH 579 Query: 539 GEVLQHFTRTRILN 552 E + ++ N Sbjct: 580 RETKNKLKKIKVRN 593 >UniRef50_Q1QYG3 DEAD/DEAH box helicase-like protein n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QYG3_CHRSD Length = 568 Score = 637 bits (1645), Expect = 0.0, Method: Composition-based stats. Identities = 256/581 (44%), Positives = 347/581 (59%), Gaps = 20/581 (3%) Query: 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 TFA+L L + IL L LGYE PS IQA+ IP LL GRDVLG AQTG+GKTAAF+LPL Sbjct: 8 SPTFAELSLPSTILSTLETLGYETPSLIQAKTIPALLEGRDVLGQAQTGTGKTAAFALPL 67 Query: 65 LQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 L LD + + PQ+LVLAPTRELA QVA + + + ++G+ V++L GGQ Y QL LR+ Sbjct: 68 LSRLDLQRREPQVLVLAPTRELAQQVAASFVQYGRGVKGLEVLSLCGGQEYREQLSGLRR 127 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 G Q++VGTPGR++DHL RG+L L L+ LVLDEADEMLRMGFI+DV+ +++ P+ Q Sbjct: 128 GAQVIVGTPGRVIDHLDRGSLKLDGLNALVLDEADEMLRMGFIDDVKRVVSDTPKDAQRV 187 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 FSAT+P+ I RI ++ +P + I++ T I Q + G K EAL R LE E Sbjct: 188 FFSATLPDEISRIVNHYLVDPLRIAIETKTKTAEGIEQRLVRIEGGAKLEALSRLLEVEP 247 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 DAAI+FVRT+ A + E L G N+AAL+GD++Q+LRE+T+ERLK G++D+LIATDV Sbjct: 248 VDAAIVFVRTRAACTTLVEQLLLRGVNAAALSGDLDQSLRERTVERLKRGKVDVLIATDV 307 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 AARGLDV RI+ V NYD+P D+E+Y HRIGRTGRAGR G A+ F RE+R +R++ER Sbjct: 308 AARGLDVPRITHVFNYDLPQDAEAYTHRIGRTGRAGRTGVAITFAGGREQRRVRDMERVT 367 Query: 365 KLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETL 424 + EVELP+ + + R E F +V L ++ + D L Sbjct: 368 GQQMQEVELPDEDAIRAHRNELFRKRVLDTLARGS-----DYQRELIDGLVDDGYDPVDL 422 Query: 425 AAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVG 484 A A+ MA+ +AP+ + +R R R+D+ RR+R Sbjct: 423 ACAMASMAR-------SGEAPIGRLPKPGERRSRQSSGRDDK--------PNRRDRGPSA 467 Query: 485 DMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQH 544 M YR+ VG DGV+ +VGA+ANEG I IG I + + S +ELP +P VL Sbjct: 468 GMTRYRVSVGHKDGVKPGQLVGALANEGGIDGGKIGRIDIRNAFSVVELPNTLPAAVLSR 527 Query: 545 FTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREG 585 + R+ +P+ + A RR G R + Sbjct: 528 IAQARVAGRPLEIAEDHGAPERAPRRRREDGDSTPRRRSQA 568 >UniRef50_C5C5R9 DEAD/DEAH box helicase domain protein n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5C5R9_BEUC1 Length = 589 Score = 637 bits (1645), Expect = 0.0, Method: Composition-based stats. Identities = 254/586 (43%), Positives = 344/586 (58%), Gaps = 16/586 (2%) Query: 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 E +F DLGL +L+A+ LG+ P+PIQ IP LL+GRD++G+AQTG+GKTAAF LPL Sbjct: 19 EPSFDDLGLPQALLDAVTGLGFTTPTPIQTAAIPALLSGRDLVGVAQTGTGKTAAFGLPL 78 Query: 65 LQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 L +DP+L A Q LVL PTRELA+QV++A+ F GV V+ +YGG + QLR L + Sbjct: 79 LAAVDPQLAAVQALVLTPTRELAIQVSDAVASFVPSGAGVKVLPIYGGASFVPQLRGLER 138 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 G Q+VVGTPGR++D L+RG+LDL L LVLDEADEMLRMGF EDV+ I+A+ P Q A Sbjct: 139 GAQVVVGTPGRVIDLLERGSLDLDALRYLVLDEADEMLRMGFAEDVDVILAKTPATKQVA 198 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 LFSATMP IR++ ++ P+E+ + T ++Q+Y V K EAL R L D Sbjct: 199 LFSATMPPPIRKVAETHLRNPEEIAVARQATPIAAVTQTYAIVPYRNKAEALSRVLATSD 258 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 DAAI+FVRT+ EV AL G N+A+++GD+ Q RE+ +ERL+ G LD+L+ATDV Sbjct: 259 ADAAIVFVRTRETAEEVGTALASRGINAASISGDVAQRERERIVERLRSGALDVLVATDV 318 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 AARGLDVERI LVVN+D+P + E+YVHRIGRTGRAGR G AL F+ +E+ LR IER Sbjct: 319 AARGLDVERIGLVVNFDVPREVETYVHRIGRTGRAGRTGNALTFLTPKEKPRLRTIERVT 378 Query: 365 KLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETL 424 + E +P + R A +L + D+ +R ++ +D + Sbjct: 379 GSRLVEATIPTNAEVAAHRTGAALATAHARLGAGDVSAHR---ERLVAHVAELGVDPLDV 435 Query: 425 AAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVG 484 AAALL +A G+ D + R R R R RR G Sbjct: 436 AAALLALAVGDDGAPAGDDLALPAHDGDRQRG------------FDGDRGRERGGRRGGG 483 Query: 485 DMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQH 544 D + YRI VG DGV + IVGAI EG + IG I +F S S +E+P G+ +V + Sbjct: 484 DGEKYRIAVGHRDGVSPQAIVGAITGEGGLRGADIGKIDIFPSFSLVEIPGGVSPDVARR 543 Query: 545 FTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFS 590 ++ +P+ ++L P+ G GG R G R + + Sbjct: 544 IGAAKVAGRPLRIRLDDG-PPNRGHRSGGGQRDARGPRDSRRPSRA 588 >UniRef50_A9ENG9 ATP-independent RNA helicase n=18 Tax=Bacteria RepID=A9ENG9_SORC5 Length = 624 Score = 636 bits (1641), Expect = 0.0, Method: Composition-based stats. Identities = 250/624 (40%), Positives = 344/624 (55%), Gaps = 18/624 (2%) Query: 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 +FA LG+ +L L +LGYE+P+PIQ E IPHLL GRD+LG A TG+GKTAAF+LPL Sbjct: 7 SASFAALGIAPALLGVLAELGYEEPTPIQREAIPHLLTGRDLLGQAATGTGKTAAFALPL 66 Query: 65 LQNLD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 LQ L+ + P+ LVL PTRELA+QVAEAM + + + GV V+++YGGQ + QLRA Sbjct: 67 LQRLEIGGEPPRLPEALVLVPTRELAMQVAEAMHRYGRRL-GVQVLSVYGGQPFGQQLRA 125 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 LR+G +VV TPGR LDH+ RGTL L + +VLDEADEML MGF E +E I++ P Sbjct: 126 LRRGVHVVVATPGRTLDHIGRGTLALDGIRTVVLDEADEMLDMGFAEALEEILSATPGAR 185 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTR---PDISQSYWTVWGMRKNEALVR 238 QT LFSAT+P I I R ++EP V+I P + Q+ + V K+ AL R Sbjct: 186 QTVLFSATLPPRIAAIAGRHLREPVRVKIAGEKAAPGELPRVRQTAYIVPRAHKSAALTR 245 Query: 239 FLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDI 298 L+ ED +AI+F RT+N E+ EAL GY + AL+G +Q R++ + R + G ++ Sbjct: 246 VLDMEDPSSAILFCRTRNEVDELTEALRARGYEAQALHGGFSQEHRDRVMARFRAGTAEL 305 Query: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLR 358 L+ATDVAARGLD+E +S V+NYD+P E YVHRIGRTGRAGR G A+ VE RE L+R Sbjct: 306 LVATDVAARGLDIEHVSHVINYDVPCAPEVYVHRIGRTGRAGREGAAITLVEPREHYLIR 365 Query: 359 NIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEE 418 N+ER I LP L RRLE A +++ L +++R ++ + + + Sbjct: 366 NVERLTGQRIEAATLPTVADLRARRLELTRASLREALIEGGAERFRVVVEGLADEFDVMD 425 Query: 419 LDLETLAAALLKMAQGERTLIVP-PDAPMRPKREFRDRDDRGPR-DRNDRGPRGDREDRP 476 + + A P P+ R RDDR PR RG G+ + RP Sbjct: 426 IAAAAVKLAHDATEGDREEEEAEIPSFRPPPRGPERARDDRAPRGPAGARGRPGEAQARP 485 Query: 477 RRE----RRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIE 532 RRE R G++ + GR+ G+ +VGAIANE +SSR IG I++ ST+E Sbjct: 486 RRETREARETDGNVARLYVSAGRNAGIRPADLVGAIANEASLSSRDIGAIEIADGFSTVE 545 Query: 533 LPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGE 592 +P V++ TR+ + + ++ G G R G Sbjct: 546 VPADAADAVIEALRATRLKGRKVQVRRDDAGSREARGGAAEARGGAAEARGGAAEARGGA 605 Query: 593 RREGGRGDGRRFSGERREGRAPRR 616 G+ +G R PR Sbjct: 606 AEARGK-----AAGMAPPRRRPRT 624 >UniRef50_C7MCD0 DNA/RNA helicase, superfamily II n=2 Tax=Actinomycetales RepID=C7MCD0_BRAFD Length = 669 Score = 635 bits (1639), Expect = e-180, Method: Composition-based stats. Identities = 257/601 (42%), Positives = 356/601 (59%), Gaps = 15/601 (2%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 +F D+ L AP+ A+++LG+ PS IQA+ IP LL GRDV+G+AQTG+GKTAAF LPLL Sbjct: 84 PSFDDIALPAPLRRAVDELGFTTPSAIQAQAIPPLLEGRDVIGVAQTGTGKTAAFGLPLL 143 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 +DP L+ Q LVLAPTRELA+QVA+A+ F+ + G++VVALYGG Y Q RAL +G Sbjct: 144 AAIDPSLREVQALVLAPTRELAMQVADAIASFATSIGGLDVVALYGGSPYGPQERALARG 203 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 Q+VVGTPGR++DH++R L L + VLDEADEMLRMGF EDVE I++ P+ Q AL Sbjct: 204 AQVVVGTPGRVMDHMRRTNLRLDTIRVAVLDEADEMLRMGFAEDVEEILSHSPDTRQVAL 263 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSATMP AI+R+ + M++P V + +T + Q+Y V + AL R L D Sbjct: 264 FSATMPAAIQRVAQTHMQDPVRVSVSPQSSTVKSVHQTYAVVPFRHRTGALARVLATSDA 323 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 +AAI+FVRT+ A EV AL G +A+++GD+ Q RE+ +ERL+DG L +L+ATDVA Sbjct: 324 EAAIVFVRTRAAAEEVGTALVGRGLIAASISGDVPQKEREKIVERLRDGSLQVLVATDVA 383 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARGLDVERI LVVN+D+P ++ESYVHRIGRTGRAGR+G AL F+ ERR L+NIER K Sbjct: 384 ARGLDVERIGLVVNFDVPKEAESYVHRIGRTGRAGRSGEALTFIGPHERRALKNIERATK 443 Query: 366 LTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLA 425 T+ E +P+ + K RL +V ++E L+ YR L+ + ++D LA Sbjct: 444 QTLAEAVIPSPRDVSKHRLAAQLTQVPARVERGRLELYRELIGQFVAEH---DIDPLELA 500 Query: 426 AALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGD 485 AAL M+ G+ P + + G + DR PRGDR+ PR Sbjct: 501 AALGAMSVGDEG----------PGTATEEEEFTGAKLGEDRSPRGDRDRGPREAAATERG 550 Query: 486 MQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHF 545 Y++ VG G IVGAI EG + + IG I++F + +++ + E ++ Sbjct: 551 YTSYKVGVGHTHGARPPGIVGAITGEGGLHGKDIGKIQIFPHFALVQIRGSLSPEQMERI 610 Query: 546 TRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERREGGRGDGRRFS 605 +R ++ + + + P G R R+ G R + R RR Sbjct: 611 SRAKVGGRELRIGPDHG--PRGGKGPRRDNDRPFRRDDRSRRDDRGGRFDSARRGPRRSE 668 Query: 606 G 606 G Sbjct: 669 G 669 >UniRef50_A5CVQ6 ATP-dependent RNA helicase DeaD n=2 Tax=sulfur-oxidizing symbionts RepID=A5CVQ6_VESOH Length = 608 Score = 635 bits (1638), Expect = e-180, Method: Composition-based stats. Identities = 262/624 (41%), Positives = 382/624 (61%), Gaps = 27/624 (4%) Query: 1 MAEFET------TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGS 54 M+E ++ F LGL IL L+ +GYE PSPIQ +CI HLLN +D++G AQTG+ Sbjct: 1 MSENKSDQKSPSKFERLGLSNTILNVLDSIGYETPSPIQEQCITHLLNNKDIIGQAQTGT 60 Query: 55 GKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQR 114 GKTAAF LPLL ++ + APQ+L+LAPTRELA+QV+EA+ +++ M+G +V+ +YGGQ Sbjct: 61 GKTAAFVLPLLDKINLNINAPQLLILAPTRELAIQVSEAVQTYARGMKGFHVLPIYGGQS 120 Query: 115 YDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIM 174 YD+QLR L++G +VGTPGR++DH+++ TL L L VLDEADEML+MGFI+D++ IM Sbjct: 121 YDIQLRPLKRGVHAIVGTPGRVMDHIEKKTLKLDNLKSFVLDEADEMLKMGFIDDIKWIM 180 Query: 175 AQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWG-MRKN 233 +IPE Q ALFSATMP I++I ++F+ +P+ ++I++ T I+Q Y V G K Sbjct: 181 QRIPEQRQIALFSATMPNVIKKIAKQFLNQPKIIKIKTKTETATTITQKYCMVGGLSNKL 240 Query: 234 EALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKD 293 EAL R LE FDA IIFVRTK T E+ E L G+++ A+NGD+ Q RE+ + K Sbjct: 241 EALTRILEVTVFDAMIIFVRTKTLTTELTEKLSARGFSADAINGDIQQNQRERIINDYKQ 300 Query: 294 GRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRE 353 G++DILIATD+AARGLDVERIS VVNYDIP D+ESYVHRIGRTGRAGR G A+LFV NRE Sbjct: 301 GKIDILIATDIAARGLDVERISHVVNYDIPQDAESYVHRIGRTGRAGRKGEAILFVSNRE 360 Query: 354 RRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPT 413 RR+L IE + I +ELP+ +++ +R+E F + Q + + +L+ ++ L+ + Q Sbjct: 361 RRMLNTIEHVTRQKITPIELPSVKIINAKRIETFKQNIIQTINNQNLEIFKKLVGEFQQ- 419 Query: 414 AEGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDRE 473 E ++++ +++AL +AQG L++ + G Sbjct: 420 -ENPKIEISQISSALAYIAQGNEPLLLSEK-----------ESNLGFNQTPKEKIIISIR 467 Query: 474 DRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIEL 533 +P + + M Y+IEVG ++ V+ +I+GAIAN+ ++ S YIG+I++F STI+L Sbjct: 468 AKPLKGFPKIP-MCRYKIEVGNNNNVKTSNILGAIANKTNMDSEYIGSIQIFDHFSTIDL 526 Query: 534 PKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGER 593 P + EV +T + K +N+ L R R FS + Sbjct: 527 PAKISNEVFGVLQKTIVCGKHLNIVELTKKNNKDTIVGRTEKRNLN------RGKFSKNK 580 Query: 594 REGGRGDGRRFSGERREGRAPRRD 617 R + S ++ + R+ Sbjct: 581 NNNQRDNKNYHSKNKKYDKHSRKS 604 >UniRef50_Q0AVQ9 ATP-dependent RNA helicase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AVQ9_SYNWW Length = 530 Score = 632 bits (1632), Expect = e-179, Method: Composition-based stats. Identities = 212/569 (37%), Positives = 315/569 (55%), Gaps = 43/569 (7%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 F +GLK +L+ +++ G+EKP+PIQ + IP + G D++G AQTG+GKTA+F +P+L Sbjct: 5 NFYSMGLKTDLLQMIDEKGFEKPTPIQVKSIPIAMAGLDLMGQAQTGTGKTASFGIPILN 64 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 + + + Q LVL PTRELAVQV E ++ S+ MR + V+A+YGGQ ++QLR+LR+ P Sbjct: 65 RVI-KGEGLQALVLCPTRELAVQVTEEISSLSRRMR-IQVLAIYGGQSIELQLRSLRRNP 122 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 +I+VGTPGRL+DH+ RGT+ LS L +VLDEADEML MGF+ D++ I++Q P QT LF Sbjct: 123 EIIVGTPGRLMDHMNRGTISLSPLKYVVLDEADEMLDMGFLPDIQKILSQCPRERQTFLF 182 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SAT+P+ +R + +FMK+P+ + I+S T P+I Q Y+ V RK E L R ++A+ Sbjct: 183 SATLPDEVRELGTKFMKQPEIILIESPERTVPEIEQYYYQVNSRRKIETLCRIIDAQQPP 242 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 ++IF RTK E+A L GYN+ AL+GDM+Q R+ + + G IL+ATD+AA Sbjct: 243 ISLIFCRTKRNADELARVLTSRGYNADALHGDMSQRERDHVMHGFRQGNTKILVATDLAA 302 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RGLD+E ++ V N+DIP D +SY+HR+GRTGRAGR+G A+ VE + RLLR IER Sbjct: 303 RGLDIELVTHVFNFDIPEDLDSYIHRVGRTGRAGRSGIAITLVEPTQIRLLRMIERHTGK 362 Query: 367 TIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAA 426 I LP ++R + +V+Q + D +L K+ D E + A Sbjct: 363 RIERALLPTLAEAVEKRQDLLLERVRQA-SAEPGDVCLSLAEKLMQQG-----DPEKMLA 416 Query: 427 ALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDM 486 A LK+ E + P M Sbjct: 417 AALKLLIDEEPDFEMAELPESDD-----------------------------------SM 441 Query: 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFT 546 + GR G+ R ++ IA +S + +G+I++ + + +E+P EV + F Sbjct: 442 AHLELPAGRLQGIHPRQLLEFIATHTSLSPQRVGDIEINRNSTFVEVPMDYIHEVYEAFE 501 Query: 547 RTRILNKPMNMQLLGDAQPHTGGERRGGG 575 + R K + GG Sbjct: 502 KYRRTQKNKTRPARFPKENRKIMVNHGGR 530 >UniRef50_B0P7Y4 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P7Y4_9FIRM Length = 572 Score = 632 bits (1630), Expect = e-179, Method: Composition-based stats. Identities = 221/594 (37%), Positives = 329/594 (55%), Gaps = 37/594 (6%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 M+E + F D+GL +++A++D+ Y + + IQA+ IP L+ G DV+G + TG+GKTAAF Sbjct: 1 MSETK--FEDIGLSPELVQAVSDMNYTQATGIQAQAIPLLMQGADVIGRSSTGTGKTAAF 58 Query: 61 SLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 +P ++ ++ LKAPQ+LVL+PTRELA+Q+A+ M F+K+ GV V A+YGG D Q+R Sbjct: 59 GIPAVERIESGLKAPQVLVLSPTRELAMQIADEMRKFAKYKPGVCVAAVYGGAPMDAQIR 118 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 ALR IV+GTPGR++DH++R TL L L +VLDEADEML MGF++D++TI+A+ P+ Sbjct: 119 ALRA-ANIVIGTPGRVMDHMRRHTLRLDDLRTVVLDEADEMLNMGFLDDIQTILAETPDT 177 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 QT LFSATMP AI +IT +F+ +PQ V I++ T + Q ++ V RK +AL L Sbjct: 178 RQTVLFSATMPPAILKITDKFLHDPQTVDIRTGQRTIAAVEQFFYRVPQARKMDALNLLL 237 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 + D A++F TK + E L +G+ + ++GDM QA R Q ++ +DG+ IL+ Sbjct: 238 QYHDPKRAVVFCNTKAMVDSLTEYLSDHGFRALGIHGDMKQAGRTQVMQSFRDGKTRILV 297 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVE-NRERRLLRN 359 ATDVAARG+DVE I V N+DIP + E Y+HRIGRTGRAGR G + V R+ +R Sbjct: 298 ATDVAARGIDVENIEAVFNFDIPQEFEHYIHRIGRTGRAGRTGMSHTLVCGARQVDTIRQ 357 Query: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEL 419 + R + I E LP + + +++ EKFAA+V + LE+ D+Y ++ A Sbjct: 358 LRRFINADIREAPLPIGDEIVRKKREKFAARVARTLEA---DEYGKWGEQLDAIAAERGC 414 Query: 420 DLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRE 479 D+ +A AL +M ++P P R Sbjct: 415 DMRDIACALAQMIAARDKKLIPVLKIPAPGERPVRGGRR--------------------- 453 Query: 480 RRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPG 539 + R + GR V + V AIA+ + +R IG I +F S IEL + Sbjct: 454 -------VVLRADAGRAQNVTPANFVAAIADASGLPARAIGKIDIFEDSSLIELYENDAL 506 Query: 540 EVLQHFTRTRILNKPMN--MQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSG 591 VL+ TRI ++ + GG G + F + R+ + Sbjct: 507 TVLEAMRSTRIRGLEVHFALTSEKPRYAARGGVTCGREKPFFRPKPSQRRDRAS 560 >UniRef50_A9NFC3 DEAD box ATP-dependent RNA helicase n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NFC3_ACHLI Length = 547 Score = 631 bits (1629), Expect = e-179, Method: Composition-based stats. Identities = 195/551 (35%), Positives = 303/551 (54%), Gaps = 11/551 (1%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F DL + AL LG+ + +PIQ + IP ++ G D++G AQTG+GKT AF +P+++ Sbjct: 5 FNDLPILDTTKVALEKLGFTEATPIQEQAIPKMILGLDLIGQAQTGTGKTFAFGIPMVEK 64 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 D L+ Q L+L PTREL QV + + K + V + GG+ Y+ Q + L + P Sbjct: 65 TDTSLRQTQGLILTPTRELTNQVYKEIIKLVKFYPELRVTTIVGGESYEKQFKELDRKPH 124 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 I+V TPGR++DH+ RGT+DLS ++ L LDEADEML+MGF +D+E I+ PE QT LFS Sbjct: 125 IIVATPGRIIDHIDRGTVDLSHITTLTLDEADEMLKMGFQDDIERILQTTPETRQTVLFS 184 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 ATMP I++I + + K P+ ++I++ T I+Q+Y+ V K L R L+ E+ Sbjct: 185 ATMPAFIKKIAKNYQKNPELIKIEAKSLTVDRITQAYFLVKEKEKQSLLERLLDFENPST 244 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 AIIFV TK + E+L++ G+ + AL+GD+ Q+ R + R + +L IL+ATDVAAR Sbjct: 245 AIIFVNTKAGADRITESLQKAGFTADALHGDLKQSQRTYVMNRFRSKQLSILVATDVAAR 304 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 GLDV+ + ++VNYD+P E YVHRIGRTGRAG+ G+A FV +RR+L + K Sbjct: 305 GLDVDDVEIIVNYDLPQQDEIYVHRIGRTGRAGKKGKAFTFVTPLKRRMLDMLAHYTKAD 364 Query: 368 IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAA 427 I +E+P A+ + K +L+ F K++ +L + + A+ + ++L L + Sbjct: 365 IKRLEVPTADDVYKEQLKTFKHKIKTELANEYPNHLEAIKELLVDEGSKDQLLNYLLDSM 424 Query: 428 LLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDMQ 487 L E I+P A R + E ND+G + R R R G Sbjct: 425 LPTKKTYETIEIIPEKASRRSQDER----------GNDKGRKDSRSSRDASPARGSGQYV 474 Query: 488 LYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTR 547 + + +G+ DG+ + + E I S+ IG+I+ + + L K L Sbjct: 475 DFTLNIGKADGLTPPTLFKFMEKEYGIFSKNIGDIRHHKNETVFGLRKDSVRR-LNAKKE 533 Query: 548 TRILNKPMNMQ 558 + + ++ Sbjct: 534 VNYKGRKVVIK 544 >UniRef50_B7VSB7 ATP-dependent RNA helicase n=74 Tax=Gammaproteobacteria RepID=B7VSB7_VIBSL Length = 689 Score = 630 bits (1626), Expect = e-179, Method: Composition-based stats. Identities = 245/554 (44%), Positives = 347/554 (62%), Gaps = 11/554 (1%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 M+E F +L L IL AL+ +G+ P+PIQA IP LL GRD LG AQTG+GKTAAF Sbjct: 29 MSESVIQFNELALNENILSALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAF 88 Query: 61 SLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 SLPLL ++ PQ +++APTRELA+QVA + + + ++G+ V+ +YGG Q+R Sbjct: 89 SLPLLNKINLNQHKPQAIIMAPTRELAIQVAAEIKNLGRDIKGLKVLEIYGGASIVDQMR 148 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 AL +G IVVGTPGR+ D L R L L + VLDEADEML+MGF++DV I+ Q PE Sbjct: 149 ALSRGAHIVVGTPGRVKDLLTRDRLHLDEAHTFVLDEADEMLKMGFVDDVTWILEQAPES 208 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 Q LFSATMP ++ I R+++ P +V + + T ++Q+YW V G+ K+EA+ R L Sbjct: 209 AQRVLFSATMPPMVKTIVDRYLRNPAKVDVAGTNHTVDKVAQNYWVVKGVEKDEAMSRLL 268 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 E E+ DA+I+FVRT+ T +A+ L G+ +AAL+GD+ Q+LRE+T++ +K G +DIL+ Sbjct: 269 ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV 328 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATDV ARGLDV RI+ V NYDIP D ESY+HRIGRTGRAGR G+A+L V + R+LR I Sbjct: 329 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI 388 Query: 361 ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELD 420 ER K + E++LP + + R+ K A+++ + ES L+ + L+S +Q + E+D Sbjct: 389 ERVTKSQMEEIQLPQRDEVAAARVAKLGAELETEKESKALENFAGLISTLQESL---EVD 445 Query: 421 LETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRER 480 TLAA LLK QG+ L + PM E + R DR++ Sbjct: 446 AATLAAMLLKRQQGKSPLFYVGEDPMIAAIERD--------KNRRKERREDRDNGRGDRN 497 Query: 481 RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGE 540 + D Y+++VGR+ GV+V+ IVGA+ANE ++ IG IKL + ++LPK M E Sbjct: 498 FNTQDWDTYQLQVGREQGVQVKDIVGALANELGLTKGSIGAIKLDQGSTYVQLPKAMNSE 557 Query: 541 VLQHFTRTRILNKP 554 ++ RI K Sbjct: 558 TAGKLSKLRIRQKE 571 >UniRef50_A7HKQ8 DEAD/DEAH box helicase domain protein n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=A7HKQ8_FERNB Length = 571 Score = 630 bits (1625), Expect = e-179, Method: Composition-based stats. Identities = 187/575 (32%), Positives = 290/575 (50%), Gaps = 26/575 (4%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLN-GRDVLGMAQTGSGKTAAFSLPLLQ 66 F D GL IL A+ GYEKP+ IQ +P+ L+ +D++ AQTG+GKTAAF +PLL+ Sbjct: 20 FEDFGLSEEILLAIQKKGYEKPTEIQKIVLPYALSTDKDLIAQAQTGTGKTAAFGIPLLE 79 Query: 67 NLDPELKA-PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 +D + + +++ PTRELA+Q+ E + K + V + LYGGQ + Q + L +G Sbjct: 80 RIDFKANKFVKAIIVTPTRELALQIFEELKSL-KGTKRVKITTLYGGQSLEKQFKDLEKG 138 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 IVVGTPGR++DHL R TLDLS + LVLDEAD ML MGF++DV I+ + E +T L Sbjct: 139 VDIVVGTPGRIIDHLNRDTLDLSHVEYLVLDEADRMLDMGFLDDVLEIIKRTGENKRTFL 198 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSATMP+ I I R+FMKE V T + Q Y+ V K L R ++ Sbjct: 199 FSATMPKEIVDIARKFMKEYIHVSTVKDELTTENAEQLYFEVDEKDKLPLLCRIIDMNPD 258 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 I+F +TK E+++ L GYN+ L+GD +Q RE+ L++ + +L IL+ TDVA Sbjct: 259 FYGIVFCQTKLEVDEISKKLLDLGYNADGLHGDYSQYQRERVLDKFRKKQLRILVTTDVA 318 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARG+D++ ++ V+NY +P D E YVHRIGRTGRAG+ G A+ FV + ++R K Sbjct: 319 ARGIDIDGLTHVINYSVPRDPEYYVHRIGRTGRAGKKGFAITFVTRDDYFHFARVKRFAK 378 Query: 366 LTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLA 425 I + +P E + R+LEK ++ + S+ + Y+ +I EE+ Sbjct: 379 AKIIKDSIPQVEDILNRQLEKLLDTLKNAPKVSN-ELYKRAAQQII-----EEMGPTEAV 432 Query: 426 AALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGD 485 LL ++ + R + +G ++ + Sbjct: 433 EMLLHTLIKDKIDV-----------------SRYGDVKPKNFSKGREQNFGDSNKNVDSG 475 Query: 486 MQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHF 545 + +G G++ + +V I+ + I N+K+F + S I++ + +L+ Sbjct: 476 SVRLFVNMGSSKGLDKKKLVEFISERTGVEPSNINNVKVFENFSFIDVSEFDAEVILKTL 535 Query: 546 TRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGG 580 R N + + E R Sbjct: 536 NPKRGKNSRSKPLVERAREKRENRENRESKERKSR 570 >UniRef50_B1ZXI6 DEAD/DEAH box helicase domain protein n=3 Tax=Verrucomicrobia RepID=B1ZXI6_OPITP Length = 594 Score = 629 bits (1624), Expect = e-179, Method: Composition-based stats. Identities = 206/575 (35%), Positives = 310/575 (53%), Gaps = 30/575 (5%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 FA+LGL IL A++ +G+E+ +PIQA IP +L GRDV+G++ TGSGKT AF++P L+ Sbjct: 6 FAELGLSPEILRAVDKMGFEEAAPIQAAVIPTVLGGRDVVGVSSTGSGKTVAFAIPALER 65 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 +DP+L+A Q+LVL PTRELAVQVAE M ++ RG+ V +YGGQ Y+ Q RAL G Q Sbjct: 66 VDPKLRAVQVLVLCPTRELAVQVAEEMGHLAQFKRGIMGVPIYGGQSYERQYRALAAGSQ 125 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 +V+GTPGR++DH++RGTL L L +VLDEAD ML MGF ED+E I++ +P Q FS Sbjct: 126 VVIGTPGRVMDHMERGTLKLGALKLVVLDEADRMLDMGFREDIEKILSAVPVPRQLLFFS 185 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 ATMP I+ + +R ++P ++I++ P + Q Y+ V K EAL R ++ DF Sbjct: 186 ATMPRPIQELIKRTARDPAWIKIEAVAQNAPQVEQIYFEVDRRSKLEALTRLIDVHDFRY 245 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 I+F TK ++ E L GY L+GD++Q R++ +++ + + LIATDVAAR Sbjct: 246 GIVFCSTKVMVDDLDEHLHARGYAVDRLHGDLSQTQRDRVMDKFRRRGFEFLIATDVAAR 305 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 GLDV+ + +V NYD+P D+E Y HRIGRTGRAG++GRA FV +E L+ + R KL Sbjct: 306 GLDVDDLEVVFNYDLPNDAEDYTHRIGRTGRAGKSGRAFTFVSGQEIYKLQAMVRWAKLD 365 Query: 368 IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTA------------- 414 + LP+ + + + R F K++ LE+ + + ++ ++ Sbjct: 366 LRRGRLPSLDEVEEARTNVFFEKIRAALEAKEFKPHDRMIDRLLDQGYASTDICSALIHL 425 Query: 415 -------------EGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPR 461 E + A K A RT +RP + P Sbjct: 426 LQGGSTGTPAAVHESAKASAAAPDWARRKSAPESRTAFPSEAGEIRPSPKASSFAKPTPD 485 Query: 462 DRNDRGPRGDREDRPRRERRDV----GDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSR 517 D P + + R M + VGR+ V IVG IA +++ Sbjct: 486 KTADGLPALAGRKKQKYARPPRTGAEPGMSPVVLNVGREHQVTPADIVGKIAGVTRLAAS 545 Query: 518 YIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILN 552 +G I + H+ +++ + V++ R+ Sbjct: 546 IVGAIDIHERHTLVDVAENAVPVVIKKLAGIRLKG 580 >UniRef50_D1N203 DEAD/DEAH box helicase domain protein n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N203_9BACT Length = 627 Score = 629 bits (1624), Expect = e-179, Method: Composition-based stats. Identities = 205/624 (32%), Positives = 307/624 (49%), Gaps = 33/624 (5%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGR-DVLGMAQTGSGKTAA 59 M++ + F LG+ +LEAL G+E PSPIQA IP LL G D++G AQTG+GKTAA Sbjct: 1 MSDLD-NFRKLGVSEEVLEALRAKGFEAPSPIQALTIPKLLEGAVDLIGQAQTGTGKTAA 59 Query: 60 FSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119 F +P+++ + K PQ L+L+PTREL++Q+AE + K R + + YGGQ ++QL Sbjct: 60 FGIPVIELCEGGGKKPQALILSPTRELSIQIAEELNSL-KGKRKLRIAPFYGGQMIEIQL 118 Query: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179 + LR G +V+GTPGR++D ++RG LD S+L VLDEADEML MGF+ED+E I+ Sbjct: 119 QRLRDGIDVVIGTPGRIMDLMERGKLDFSELKFAVLDEADEMLDMGFVEDIEKILGATNS 178 Query: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239 + +FSATMP I +I RFM+ + VR +S+ Q Y+ V K EAL R Sbjct: 179 DKRMLMFSATMPPEILKIAERFMRSYETVRAESAQLNTELTEQIYFEVRREDKFEALSRI 238 Query: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299 ++ E A++F RT+N E+ E L+ G+ AL+GD+ Q R + + + KD + IL Sbjct: 239 IDVEQDLYALVFCRTRNDVDELVEKLKLRGHRVEALHGDIAQMQRTRVINQFKDKKFKIL 298 Query: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359 IATDVAARG+DV ++ V+NY +P +E+YVHRIGRTGRAG+ G A+ FV E R L Sbjct: 299 IATDVAARGIDVNDLTHVINYSMPQGTETYVHRIGRTGRAGKNGTAITFVTPAEYRKLTM 358 Query: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEL 419 I+R I ELP + + + + F+ ++ + + + +Y ++ Sbjct: 359 IQREAHTEIRREELPQGRDIVEMKKQHFSEQLSEAISAGQHQEYLDFADELIEKTGNA-- 416 Query: 420 DLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRE 479 +AAL M Q + P + + R+ + Sbjct: 417 -----SAALAAMLQLRFKGELLPQSYVEIGRKRDR--------------------KTWES 451 Query: 480 RRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPG 539 D I VG+ DG ++ I + I IG I + S + + Sbjct: 452 SADDHGSTRLFIGVGKLDGFGAVKMLDLIWEKARIKKYRIGKIDCYDRFSFVNVNFEDAE 511 Query: 540 EVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERREGGRG 599 ++ F R + + + G R R ERR R Sbjct: 512 AIIDAFRRG---GPKVQLAAERPSDEQNAGPAERPNRSVPVRRSREEHAERPERRTYTRR 568 Query: 600 DGRRFSGERREGRAPRRDDSTGRR 623 S ER R+ +T ++ Sbjct: 569 SAETASAERPMRRSKPETPATAKK 592 >UniRef50_Q48FQ8 ATP-dependent RNA helicase, DEAD box family n=23 Tax=Pseudomonadaceae RepID=Q48FQ8_PSE14 Length = 570 Score = 629 bits (1624), Expect = e-179, Method: Composition-based stats. Identities = 248/559 (44%), Positives = 342/559 (61%), Gaps = 4/559 (0%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 M + FA L L I+ A+ GYE+PS IQ + IP +L G D++G AQTG+GKTAAF Sbjct: 12 MTQEIGGFAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAF 71 Query: 61 SLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 +LP+L +DP + PQ L+LAPTRELA+QVA A ++K M GV VVA+YGG QL+ Sbjct: 72 ALPILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK 131 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 A+R G QIVV TPGRL DHL+R L+ ++ LVLDEADEML++GF++D+E I +PE Sbjct: 132 AIRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPET 191 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 QT LFSAT+P++IR I R +++P+ V+IQ+ T I Q++ V +K A++ L Sbjct: 192 RQTVLFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL 251 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 E EDFDA I+FVRTK ATL++A ALE GY +AALNGD+ Q RE+ ++ LKDGRLDI++ Sbjct: 252 EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV 311 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATDVAARGLDV RI+ V N D+P D ESYVHRIGRTGRAGR GRALL V RERR+L+ I Sbjct: 312 ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI 371 Query: 361 ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELD 420 ER + EV LP+A+ + R++K + + ++ + LL ++ Sbjct: 372 ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAE-STHGDLLDRLTADIGCSPRA 430 Query: 421 LETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRER 480 L Q + + P+ P R D +DRG R +RE R Sbjct: 431 LAAALLRKATNGQALTLAAIERERPLVPNNAPR-GDRPERSGSSDRGDRPERERRAPVPL 489 Query: 481 RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGE 540 + R +G DG+ ++++GAI NEG ++ IG I++ S S +ELP+ Sbjct: 490 AEGR--ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLER 547 Query: 541 VLQHFTRTRILNKPMNMQL 559 +L TR+ K + ++ Sbjct: 548 LLTKLKDTRVAGKQLKLRR 566 >UniRef50_B1V958 DEAD/DEAH box helicase-like n=4 Tax=Candidatus Phytoplasma RepID=B1V958_PHYAS Length = 564 Score = 627 bits (1618), Expect = e-178, Method: Composition-based stats. Identities = 187/559 (33%), Positives = 301/559 (53%), Gaps = 12/559 (2%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F L + +AL +L + + +PIQA IP ++ G DV+G AQTG+GKT AF +P+++ Sbjct: 5 FEQLPILEQTKKALQELNFIEATPIQALVIPEIIQGHDVIGQAQTGTGKTFAFGIPIIEK 64 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 +D +L Q L+L PTREL +QV E + ++ + + ++GG+ Y Q RAL P Sbjct: 65 IDYKLSKTQSLILCPTRELTLQVYEELKKLLRYYPQIRIAVVFGGESYTKQFRALESKPH 124 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 +++ TPGR++DH++RG +DLS L L LDEADEML+MGF E +ETI+ QIPE QT LFS Sbjct: 125 LIIATPGRVIDHIERGKIDLSALKILTLDEADEMLKMGFQEALETILKQIPEERQTVLFS 184 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 AT+P +I++I ++ K + +++ I Q Y+ V KN+ LVR L+ + + Sbjct: 185 ATLPPSIKQIASKYQKNTKILQVPVKKLAVNAIEQYYFLVKEFDKNKLLVRLLDLKRDYS 244 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 I+F TK E+ L+ G+ + A++GD+ Q R+ + + G++ ILIATDVAAR Sbjct: 245 TILFANTKKDVDEITSFLQDKGFLADAVHGDLKQNQRQYVMNNFRKGKIKILIATDVAAR 304 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 G+D+ I +VVNYD+P + E YVHRIGRTGRAG+ G A F+ R+ L+ +E +K Sbjct: 305 GIDISDIKMVVNYDLPHEDEVYVHRIGRTGRAGKKGLAYSFISPRKFSQLKKLEYYLKEK 364 Query: 368 IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQY-RALLSKIQPTAEGEELDLETLAA 426 + +E+P+ E + K+ LE F KV +E + + ++ K+ E++ Sbjct: 365 VKFLEIPSVEEIKKQILENFEQKVIDIIEKNSQENANNPMIEKLLQKFSSEQI--IQGLL 422 Query: 427 ALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDR--------EDRPRR 478 ++ T I+PP P+ F + R R + Sbjct: 423 TNIQPKAKNYTDIIPPRMTFTPRETFNNNSFGNRRFGEKRFQNPKFSSYNSYNSYNSYNS 482 Query: 479 ERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMP 538 + D I +G+ D + ++ + +E I + IGNIK + E+P Sbjct: 483 YSQKRNDFIEATINLGKKDNINPTVLIRLLKDEYQIYGKNIGNIKHLTHETIFEIPSRFW 542 Query: 539 GEVLQHFTRTRILNKPMNM 557 + +++ + R NK + + Sbjct: 543 NQ-MKNKSDIRFQNKILVI 560 >UniRef50_Q5L3G9 DEAD-box ATP-dependent RNA helicase cshA n=94 Tax=Firmicutes RepID=CSHA_GEOKA Length = 467 Score = 626 bits (1615), Expect = e-178, Method: Composition-based stats. Identities = 201/468 (42%), Positives = 292/468 (62%), Gaps = 6/468 (1%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 TTF +LGL +++A+ +G+E+ +PIQA+ IP L +DV+G AQTG+GKTAAF +P++ Sbjct: 2 TTFQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIV 61 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 + ++ + A Q LV+APTRELA+QV+E + ++ V V+ +YGGQ + Q+RAL++ Sbjct: 62 EKVNVKNSAVQALVVAPTRELAIQVSEELYKIGA-VKRVRVLPIYGGQDIERQIRALKKH 120 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 P ++VGTPGR++DH+ RGTL L + +VLDEADEML MGFIED+E I++ +P QT L Sbjct: 121 PHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQTLL 180 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSATMP+ IRRI RFM EP+ V++++ T P+I Q Y V +K + L R L+ + Sbjct: 181 FSATMPDPIRRIAERFMNEPELVKVKAKEMTVPNIQQYYLEVHEKKKFDILTRLLDIQAP 240 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 + AI+F RTK E+AEAL GY + ++GD++QA R L + K+G ++IL+ATDVA Sbjct: 241 ELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILVATDVA 300 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARGLD+ ++ V N+DIP D ESYVHRIGRTGRAG+ G A+ FV RE L +IERT K Sbjct: 301 ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHIERTTK 360 Query: 366 LTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLA 425 + ++ P + + + K+ +E+ +L Y+ ++ EE D T+ Sbjct: 361 RKMERMKPPTLDEALEGQQRIAIEKLLNVVETENLSFYKRAAEELL-----EEHDSVTIV 415 Query: 426 AALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDRE 473 AA LKM E P R++ G D + R R Sbjct: 416 AACLKMLTREPDTTPVQLTEEPPLAVKREKKRGGRPDGSARSRTKKRR 463 >UniRef50_C0YHR5 ATP-dependent RNA helicase n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YHR5_9FLAO Length = 562 Score = 623 bits (1607), Expect = e-177, Method: Composition-based stats. Identities = 200/561 (35%), Positives = 318/561 (56%), Gaps = 9/561 (1%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNG-RDVLGMAQTGSGKTAAFSLPLLQ 66 F + L IL+A+ +LGYE P+ IQ + IP +L+ RD++ +AQTG+GKTAAFSLP+L Sbjct: 4 FTETNLSPDILKAIGELGYESPTEIQKQTIPFILSDIRDLIALAQTGTGKTAAFSLPILD 63 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 +D + Q+LVL PTREL +Q+++ + ++SK+M+ + A+YGG Q+R+L+ P Sbjct: 64 MIDDTSRKIQLLVLCPTRELCLQISKDIKNYSKYMKDIKTTAVYGGSSIVEQMRSLKDKP 123 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 QI+VGTPGR++D + R LD S + LVLDEADEML MGF +++ETI+++ PE QT LF Sbjct: 124 QIIVGTPGRVIDLINRKALDFSAIHWLVLDEADEMLSMGFKDELETILSETPETKQTFLF 183 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SATM + + RI++ ++ +P + + S + +I+ Y+ V +K EAL R ++A Sbjct: 184 SATMNKEVERISKNYLTKPHRISVGSINEVKKNITHEYYVVGYRQKKEALKRLIDANPNQ 243 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 +IIF RT+ T EVA+ L +NGY + AL+GD++QA R+ +++ + +DIL+ATDVAA Sbjct: 244 YSIIFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILVATDVAA 303 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RGLDV ++ V+++ +P D E +VHR GRTGRAG+ G ++ ++ E R L+ I+ K+ Sbjct: 304 RGLDVNSLTHVIHFSLPDDPEVFVHRSGRTGRAGKDGISMALIKPEESRKLKQIKSATKI 363 Query: 367 TIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEE--LDLETL 424 I E +P + + K ++ K+ E DL ++ L EE L Sbjct: 364 EIHERTIPTGDDIIKAQVGGVFEKLLT--EHEDLFEFDDSLIPDLSNFTKEELVHQLLQF 421 Query: 425 AAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVG 484 L + ++ +V R R RDR RG +R + RR Sbjct: 422 QLKDLALYYKDKHDLVEQKLSSRDDDYSRRDRRDRDRDRGRDRDRGRDRERGGKPRRRDE 481 Query: 485 DMQLYRIEVGRDDGVEVRHIVGAI--ANEGDISSR--YIGNIKLFASHSTIELPKGMPGE 540 +M + +G+ D ++ ++ I A G S + IG+I++ S E+ K Sbjct: 482 NMVRFFFNLGKKDHLKKLDVLDIINKATAGGKSKKRAEIGDIEILEKFSFFEVEKSFKDN 541 Query: 541 VLQHFTRTRILNKPMNMQLLG 561 VL + + K M ++ Sbjct: 542 VLSNIQSMKFKGKDMRAEVAN 562 >UniRef50_A4C1L2 ATP-dependent RNA helicase n=2 Tax=Polaribacter RepID=A4C1L2_9FLAO Length = 609 Score = 622 bits (1606), Expect = e-177, Method: Composition-based stats. Identities = 206/627 (32%), Positives = 329/627 (52%), Gaps = 38/627 (6%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGR-DVLGMAQTGSGKTAAFSLPL 64 +TF +LGLK PI +AL DLGYE+P+ IQ + IP +++ R D+ AQTG+GKTAAFSLP+ Sbjct: 2 STFLELGLKEPINKALTDLGYEQPTVIQEKAIPQIISSRSDLKAFAQTGTGKTAAFSLPI 61 Query: 65 LQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 L+ LD Q ++L+PTRELAVQ+ + DF K++ V V +YGG + Q+R+L++ Sbjct: 62 LELLDSNSGNVQAIILSPTRELAVQIGNNIKDFCKYLPDVKVTTVYGGSSMEDQIRSLKR 121 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 G QIVVGTPGR +D +KR L L + LVLDEADEML MGF ++++ ++ P+ QT Sbjct: 122 GSQIVVGTPGRTVDLIKRRALKLGNVKWLVLDEADEMLNMGFKDELDKVLEATPDTKQTL 181 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 LFSAT P+ + I + +M +P E+ +S Y++V + AL R + Sbjct: 182 LFSATFPKEVESIAKNYMTKPVEITSGQKNQGADSVSHEYYSVTERTRYPALKRIADLNP 241 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 AIIF RT+ T EVA+ L ++GY++ AL+GD++Q R+ + + + + IL+ATDV Sbjct: 242 DIYAIIFCRTRRETQEVADNLIKDGYSADALHGDLSQGQRDSVMGKFRKKTIQILVATDV 301 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 AARGLDV ++ V+N+ +P E+Y HR GRTGRAG G +++ V +E+ LR IE+ + Sbjct: 302 AARGLDVTELTHVINHKLPDQIENYTHRSGRTGRAGNTGISIVLVNGKEKGKLRPIEKII 361 Query: 365 KLTIPEVELPNAELLGKRRLEKFAAKVQQ-QLESSDLDQYRALLSKIQPTAEGEELDLET 423 + E ++P+ + + + +L KV ++ + ++ + + + + E+L + Sbjct: 362 QKKFTEAKVPSGKDICQNQLMSLIDKVVNIEVNETQINDFLPSIYEKLEGLDREQLIQKF 421 Query: 424 LAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDV 483 ++ M D + R ++ Sbjct: 422 VSLEFNTMLAYYENAKDLNDLSSKDNSRARTENE-------------------------- 455 Query: 484 GDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQ 543 +M + I +GR D + ++G I + IG+I + + S E+ K + L+ Sbjct: 456 -NMTRFFINIGRKDNLNPGKLIGLINEQNIGDKVEIGSIDILDTFSFFEIDKNFEDKTLE 514 Query: 544 HFTRTR--ILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERREGGRGDG 601 F+ + + +N+++ + GG R GGGR G ++EGG RR+ Sbjct: 515 AFSSNQPDFDGRSVNIEITKKERASGGGRRGGGGRKPFGGKKEGGFGR---RRDTEGSSS 571 Query: 602 RRFSGERREGRAPRRDDSTGRRRFGGD 628 RR S RR R GG Sbjct: 572 RRNSDTGSS----RRSSDRPDRNSGGG 594 >UniRef50_C7RHZ9 DEAD/DEAH box helicase domain protein n=3 Tax=Anaerococcus RepID=C7RHZ9_ANAPD Length = 536 Score = 621 bits (1602), Expect = e-176, Method: Composition-based stats. Identities = 178/558 (31%), Positives = 299/558 (53%), Gaps = 23/558 (4%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 F +L + IL A++DLGYEKPSPIQ E IPHLL G D++G +QTGSGKTAAF++P++ Sbjct: 1 MKFNELNIGNEILRAIDDLGYEKPSPIQEESIPHLLEGNDLIGKSQTGSGKTAAFAIPII 60 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 +N++ Q L+L PTREL +QV++ + K+ + + ++++YGG Q+++L++G Sbjct: 61 ENIEAN-GITQALILCPTRELCIQVSKEIEKLYKYKKEIKILSVYGGSHIVRQIKSLKKG 119 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 +IVVGTPGRL+D ++R L L +L +VLDEADEM MGF +D++ I+ + QT Sbjct: 120 VEIVVGTPGRLMDLMRRKVLKLDQLKTVVLDEADEMFDMGFRDDMKFILDRTNPNRQTCF 179 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSATM I+ ++ + P EV+I+S T I Q Y + K EAL+R LE Sbjct: 180 FSATMGPEIQEFSKLYQTNPYEVKIKSKEVTVDRIDQYYIKLKESMKEEALMRLLEIHKA 239 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 + AI+F TK + E+L + Y L+GD+ Q+ R+Q +++ ++ + IL+ATD+A Sbjct: 240 NLAIVFCNTKRKVDRLVESLTKKNYLVDGLHGDLKQSSRDQVMKKFRNKTIQILVATDIA 299 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARGLDV+ + +V NYD+P E YVHRIGRT RAG++G + + R+ LR IE K Sbjct: 300 ARGLDVDDVDIVFNYDLPQLDEYYVHRIGRTARAGKSGLSFSLISGRDNNRLRQIENYTK 359 Query: 366 LTIPEVELPNAELLGKRRLEKFAAKVQQQL-ESSDLDQYRALLSKIQPTAEGEELDLETL 424 I ++ +P + ++ + + +L ++ DL + + +L ++ + + L Sbjct: 360 ANIKQMPVPTLVQMDRQSDLRLIEDISSKLDKNEDLSREKDILIRLMEKGYDPFMICQVL 419 Query: 425 AAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVG 484 L + L + + + +++ Sbjct: 420 LKDKLDINNNHEKLEGID---------------------LKSEKKSKSKSNNKTKKKYDK 458 Query: 485 DMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQH 544 +M + G+ D I+ A+A + IG I++ ++S I++ K + ++ Sbjct: 459 EMTTLFMNRGKIDNFTKDKIIKALARMAKVPKDKIGQIRIQKTYSFIDIEKPEAFKAIRA 518 Query: 545 FTRTRILNKPMNMQLLGD 562 +I +K + ++ Sbjct: 519 IDNKKISSKKVKIEESNK 536 >UniRef50_B8FMI0 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FMI0_DESAA Length = 567 Score = 620 bits (1599), Expect = e-176, Method: Composition-based stats. Identities = 194/569 (34%), Positives = 304/569 (53%), Gaps = 6/569 (1%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNG-RDVLGMAQTGSGKTAAFSLPLLQ 66 F LGL + A+ LG+EKP+PIQ + IP+L+ G RD +G+AQTG+GKT A+ LPL+Q Sbjct: 3 FRILGLSDELARAVESLGFEKPTPIQEKAIPYLIEGERDFVGLAQTGTGKTGAYGLPLIQ 62 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 ++D + PQ +V+ PTREL +Q+A + DF+K+M + V A+YGG Q+R ++ G Sbjct: 63 SIDLSIPRPQAIVICPTRELCLQIAGDLRDFAKYMEDIRVAAVYGGADIVKQIRTVKGGA 122 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 QI+ TPGRLLD + R + ++ +VLDEADEML MGF ED+ I++ +P+ +T LF Sbjct: 123 QIIAATPGRLLDLINRKAIKPGHVTRVVLDEADEMLNMGFQEDINAILSSLPDERRTWLF 182 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SATMP+ + I ++ P EV + PDIS + + + AL R L+ Sbjct: 183 SATMPKGVAAIAAKYQTNPVEVTMGGRNQASPDISHICYMIHAKNRYAALKRILDYCPDM 242 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 ++F RT+ T E+AEAL +GYN+ AL+GD++Q R+Q + R + + +L ATDVAA Sbjct: 243 FGLVFCRTRKDTQEIAEALMADGYNADALHGDLSQPQRDQVMGRFRRKAVQVLAATDVAA 302 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RGLDV+ IS V++Y +P D E+Y HR GRT RAG+ G+++ + RE L+++ER K Sbjct: 303 RGLDVDDISHVIHYVLPDDPEAYTHRSGRTARAGKQGKSIALITPRENYRLKDLERRGKF 362 Query: 367 TIPEVELPNAELLGKRRLEKFAAKVQQ-QLESSDLDQYRALLSKIQPTAEGEELDLETLA 425 + LP + ++++ A K+ + +D+ +Y + + EE+ + ++ Sbjct: 363 SFQLDSLPQGRDICQKQVAGLAEKLASVSVRENDIAEYMPDILEAFEGLSREEIIQKAVS 422 Query: 426 AALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGD 485 ++ R RE R +G P+++R Sbjct: 423 TEFNRLLDYYRNAG----DINAKPREKVKGQAGAKFTREKIVGKGRHGKGPKKDRLKGRK 478 Query: 486 MQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHF 545 Q + I GR D V IV + I SR IG I L S E+ K + VL+ Sbjct: 479 TQRFFINRGRLDKVNEGAIVRLVCENSGIKSRSIGQIDLNREFSFFEVEKSLAPRVLRGL 538 Query: 546 TRTRILNKPMNMQLLGDAQPHTGGERRGG 574 + K + ++ +P G ++ Sbjct: 539 ENATLDGKALQVRAADKQKPAEKGRKKAA 567 >UniRef50_Q81IT9 DEAD-box ATP-dependent RNA helicase cshA n=84 Tax=cellular organisms RepID=CSHA_BACCR Length = 533 Score = 618 bits (1595), Expect = e-175, Method: Composition-based stats. Identities = 207/443 (46%), Positives = 289/443 (65%), Gaps = 6/443 (1%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 TTF +LGL +L+++ +G+E+ +PIQAE IPH L G+D++G AQTG+GKTAAF LPLL Sbjct: 2 TTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL 61 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 +D ++ Q +V+APTRELA+QV E + KH R V ++ +YGGQ + Q+RAL++ Sbjct: 62 DKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKR-VRILPIYGGQDINRQIRALKKH 120 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 P I+VGTPGR+LDH+ R TL L + +VLDEADEML MGFIED+E I+ +PE HQT L Sbjct: 121 PHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSATMP+ IRRI RFM EPQ +++++ T P+I Q Y V +K + L R L+ + Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSP 240 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 + AI+F RTK E++EAL GY + ++GD+ QA R L + K+G +++L+ATDVA Sbjct: 241 ELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVA 300 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARGLD+ ++ V N+DIP D ESYVHRIGRTGRAG+ G A+LFV RE L+NIERT K Sbjct: 301 ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTK 360 Query: 366 LTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLA 425 + ++ P + + + A K+Q +E+ +L Y+ + ++ EE D T+ Sbjct: 361 RKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEML-----EENDSVTVV 415 Query: 426 AALLKMAQGERTLIVPPDAPMRP 448 AA LKM E P Sbjct: 416 AAALKMMTKEPDTTPIALTSEPP 438 >UniRef50_B2UNH8 DEAD/DEAH box helicase domain protein n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UNH8_AKKM8 Length = 604 Score = 617 bits (1591), Expect = e-175, Method: Composition-based stats. Identities = 213/609 (34%), Positives = 314/609 (51%), Gaps = 20/609 (3%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 M + +F+ LG+ ILEA+ LG++ PS IQ + IP + G D++G++ TGSGKT AF Sbjct: 1 MTQTS-SFSALGISPEILEAIEVLGFDTPSSIQEQAIPAAIGGADIVGLSHTGSGKTLAF 59 Query: 61 SLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 ++P L+ +DPE + Q+L L PTRELAVQ+ + + M GV+ V +YGG + QL Sbjct: 60 AIPALECIDPEERCVQVLALCPTRELAVQICREVDKLALFMDGVSAVPIYGGSSFRPQLD 119 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 ALR+G Q VVGTPGR++D ++ G L L L L+LDEADEML MGF+ED+E I +PEG Sbjct: 120 ALRRGVQFVVGTPGRVMDLMESGALRLDGLRMLILDEADEMLDMGFLEDIERIADAMPEG 179 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 QT FSATM I R+ RFMKEP ++ I+ T P I Q Y+ V + E L R L Sbjct: 180 KQTLFFSATMSPEISRLVSRFMKEPVQISIERPTLTVPTIEQVYYEVVFSSRIEVLSRLL 239 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 + ++F TK +V + L GY L+GDM Q +RE+ ++ + G L +L+ Sbjct: 240 DTGKIKMGLVFANTKKVVDDVVDGLTARGYPVDRLHGDMPQMMRERVMDSFRKGSLRLLV 299 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATD+AARGLDV+ + VVN+++P D E YVHRIGRT RAGR G+A+ FV R+ L+ I Sbjct: 300 ATDIAARGLDVDDVDAVVNFELPRDPEDYVHRIGRTARAGRKGKAITFVGRRDFSLMSRI 359 Query: 361 ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELD 420 ER + + + + A + + R E + ++L+ A+L + E Sbjct: 360 ERFIGVKLTPEPVLTAVQVDQLRTESLVDDILERLKPD------AVLPEELKEVEAAPEA 413 Query: 421 LETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRER 480 + LL+ +P D P R R + + Sbjct: 414 MAAALFDLLRERTHREVQPIPEDKPARRARRMPQTGEEAESPQKGDS------------W 461 Query: 481 RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGE 540 + GD + GR G+ + I G N ++ +G+I++F HS IE+ + Sbjct: 462 QHKGDTVTLFMNGGRMIGLRPKDIAGLFYNTVEMEKGAVGDIRIFPKHSLIEVDASVAPL 521 Query: 541 VLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGE-RREGGRG 599 +L+ + +N++ A ++G R G G R+ S G RG Sbjct: 522 LLEALATATVCGYEVNVREDKGAPEYSGTPRSSRRNGGFRNSYRGERDRSDRSGFRGNRG 581 Query: 600 DGRRFSGER 608 R GER Sbjct: 582 GFRSDRGER 590 >UniRef50_A9BJS7 DEAD/DEAH box helicase domain protein n=2 Tax=cellular organisms RepID=A9BJS7_PETMO Length = 530 Score = 617 bits (1591), Expect = e-175, Method: Composition-based stats. Identities = 189/562 (33%), Positives = 296/562 (52%), Gaps = 38/562 (6%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRD-VLGMAQTGSGKTAAFSLPL 64 T F +GL IL A++ GYE P+PIQ + IP LL+G++ V+G AQTG+GKTAAF +PL Sbjct: 2 TKFQQMGLSDNILSAIDRKGYEAPTPIQEKVIPLLLSGKNNVIGQAQTGTGKTAAFGIPL 61 Query: 65 LQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 ++ LD + Q LVL PTRELA+QV + K + +N++ +YGG Q+RAL++ Sbjct: 62 IERLDEKANDVQALVLTPTRELALQVCNEIDSL-KGNKRLNLLPVYGGVSIGNQIRALKR 120 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 +VVGTPGR++DHL RGTLD++K+ LV+DEADEML MGFIEDVE I+++ + Q Sbjct: 121 RVDLVVGTPGRIIDHLNRGTLDITKIKYLVIDEADEMLDMGFIEDVEMILSKTNKEKQIL 180 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVT---TRPDISQSYWTVWGMRKNEALVRFLE 241 +FSATMP+ I + R+ M + V T Q Y+ + K E L R ++ Sbjct: 181 MFSATMPQRIVTLARKHMGNFETVTTVQENKEDITVKKAKQIYYMISESNKIELLSRLID 240 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 + ++F +TK + E+A L + GY + ALNGD++Q RE+ ++R K R+ ILI+ Sbjct: 241 IDTNFYGLVFTKTKVQSEEIANELIKKGYEAEALNGDVSQNQRERIMDRFKSKRIKILIS 300 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 TDVAARG+D++ + V+NY +P + E+Y+HRIGRT RAG G A+ FV E R I+ Sbjct: 301 TDVAARGIDIDNLKYVINYSLPQNPENYIHRIGRTARAGNEGTAITFVTPTEYRRFMFIK 360 Query: 362 RTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDL 421 + K I E ++P A+ + ++EK +++ L Y L I + E Sbjct: 361 HSSKAIIEEAKIPQAKDIVNAKVEKIKDEIKSNLAKDIDPIYEILAETILEETDQE---P 417 Query: 422 ETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERR 481 + A++LK G + K + +D R Sbjct: 418 SQIIASILKYFYGGILKEENYNKIKEVKNSSKSKDQR----------------------- 454 Query: 482 DVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEV 541 + +G + + + I E ++ + I +I++ S + +P + Sbjct: 455 -------LFVALGSSSKMTPKKLAEFIERETGVTIKKIKDIQVMEKFSFVTVPSEQAEAI 507 Query: 542 LQHFTRTRILNKPMNMQLLGDA 563 ++ F + +P+ +Q Sbjct: 508 IEIFKQKSNRKRPLVVQAKSKR 529 >UniRef50_UPI00016C471F RNA helicase DeaD n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C471F Length = 572 Score = 616 bits (1590), Expect = e-175, Method: Composition-based stats. Identities = 224/565 (39%), Positives = 322/565 (56%), Gaps = 16/565 (2%) Query: 2 AEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFS 61 E E+ FA LGL + ++E L LGYE+P+PIQ E IP L+ G D++G A TG+GKTAAFS Sbjct: 17 TETESGFAKLGLDSRLVERLTGLGYEEPTPIQREAIPPLIEGHDLIGRAATGTGKTAAFS 76 Query: 62 LPLLQNL--DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119 LP+L L P L+L PTRELA+QVAE++ + + + GV V+ +YGG D Q+ Sbjct: 77 LPILHGLARSTARTKPTSLILVPTRELAMQVAESVAKYGQPL-GVRVLPIYGGAPMDQQI 135 Query: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179 RAL +G +VV TPGR LDH++R TL L ++ +VLDEADEML MGF ED+E I+A P Sbjct: 136 RALDRGIDVVVATPGRALDHMRRTTLKLDAITVVVLDEADEMLDMGFAEDIEAILAATPT 195 Query: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTR---PDISQSYWTVWGMRKNEAL 236 QTALFSATM I+ I + +K E+ + P + Q+ + V K AL Sbjct: 196 ERQTALFSATMAPRIKAIAVKHLKNATEIHVTRDPVPAGELPKVRQTAYVVQRQYKLAAL 255 Query: 237 VRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRL 296 R L+ E AA+IF +T++ E+ EAL GY AL+G M Q R++ + + G+ Sbjct: 256 GRVLDGESPAAALIFCKTRSEVDELTEALGGRGYRPEALHGGMAQDARDRVMRLFRAGQA 315 Query: 297 DILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRL 356 ++L+ATDVAARGLDVE ++ VVN+ +P+ E+YVHRIGR GRAGR G A+ E RE+ Sbjct: 316 NLLVATDVAARGLDVEHLTHVVNFSLPLGIENYVHRIGRVGRAGREGVAITVAEPREQGA 375 Query: 357 LRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEG 416 LR IER I ++P A L ++RLE+ +++ + + +L+ +RA+ + Sbjct: 376 LRAIERHTGQRIEYGQVPTAATLREKRLERTKVAIRETVAAGELEAFRAMFGSLVG---- 431 Query: 417 EELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRP 476 ELD +A A LK+A R + D P P R DR RD N PR Sbjct: 432 -ELDPTDVALAALKLAHRARGGDI-DDGPDIPVATVPQRGDRNGRDNNPLPPRRGAGAF- 488 Query: 477 RRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKG 536 R + I GR+ G+ R +VGAIANE + R I +I++ S +++P+ Sbjct: 489 ---RGPGPRLARIFISAGREAGIMPRDLVGAIANEAGLPGREIHSIEITERFSLVDVPED 545 Query: 537 MPGEVLQHFTRTRILNKPMNMQLLG 561 V++ R+ + ++ + Sbjct: 546 AAEHVIESLNGVRLRGRRVSARRDR 570 >UniRef50_Q65N62 DEAD-box ATP-dependent RNA helicase cshA n=135 Tax=Firmicutes RepID=CSHA_BACLD Length = 487 Score = 616 bits (1589), Expect = e-175, Method: Composition-based stats. Identities = 190/485 (39%), Positives = 290/485 (59%), Gaps = 6/485 (1%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 TF D L + + +A+ +G+E+ +PIQA+ IP L +DV+G AQTG+GKTAAF +P Sbjct: 1 MTITFQDFQLSSDLTKAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIP 60 Query: 64 LLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 L++ ++PE Q +V+APTRELA+QV+E + + R V+ +YGGQ Q+RAL+ Sbjct: 61 LVEKINPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRA-RVLPIYGGQDIGRQIRALK 119 Query: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183 + P I+VGTPGRLLDH+ R T+ L ++ +VLDEADEML MGFIED+E+I++ +P HQT Sbjct: 120 KNPHIIVGTPGRLLDHINRRTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPAEHQT 179 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAE 243 LFSATMP I+RI RFM P+ V++++ T +I Q Y V +K + L R L+ + Sbjct: 180 LLFSATMPAPIKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLEVHERKKFDTLTRLLDIQ 239 Query: 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 303 + AI+F RTK E+ EAL GY + ++GD+ QA R L + K G +++L+ATD Sbjct: 240 SPELAIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLVATD 299 Query: 304 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 363 VAARGLD+ ++ V N+D+P D ESYVHRIGRTGRAG+ G A+ F+ RE+ +LR IE+T Sbjct: 300 VAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDMLRAIEQT 359 Query: 364 MKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLET 423 K + ++ P + + + + +++ +E ++L+ Y +++ E+ D T Sbjct: 360 TKRKMDRMKAPTLDEAIEGQQQVTVDRIRTIIEENNLNFYMTAAAELL-----EDHDSVT 414 Query: 424 LAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDV 483 + AA +KM E P R R+++ + G ++ + Sbjct: 415 VVAAAIKMMTKEPDNTPVRLTEEAPLRTKRNKNHHHRSSKRRDGGGYRGKNNRSSYDKKR 474 Query: 484 GDMQL 488 Sbjct: 475 SSNDR 479 >UniRef50_C6X450 Cold-shock DEAD-box protein A n=1 Tax=Flavobacteriaceae bacterium 3519-10 RepID=C6X450_FLAB3 Length = 571 Score = 614 bits (1584), Expect = e-174, Method: Composition-based stats. Identities = 195/568 (34%), Positives = 309/568 (54%), Gaps = 14/568 (2%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNG-RDVLGMAQTGSGKTAAFSLPLLQ 66 F + L IL+A+ +LG+E P+ IQ + IP + RD++ +AQTG+GKTAAFSLP+L Sbjct: 4 FTETNLSPEILKAIGELGFESPTEIQKQTIPFISTDIRDLIALAQTGTGKTAAFSLPILD 63 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 +D + Q LVL PTREL +Q+ + + ++SK+M + A+YGG Q+R+LR P Sbjct: 64 MIDDGSRKIQFLVLCPTRELCLQITKDIKNYSKYMNNIKTTAVYGGSSITDQIRSLRDKP 123 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 QI+VGTPGR++D + R LD S++ LVLDEADEML MGF +D+ETI+ + PE T LF Sbjct: 124 QIIVGTPGRVIDLINRKALDFSEIQWLVLDEADEMLSMGFKDDLETILRETPETKHTYLF 183 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SATM + + RI++ ++ P + + S + +I ++ V K EAL R ++A Sbjct: 184 SATMNKEVERISKSYLTAPHRISVGSINEVKKNIKHEFYVVGYRHKKEALKRLIDANPNQ 243 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 +I+F RT+ T EVA+ L +NGY + AL+GD++QA R+ +++ + +DIL+ATDVAA Sbjct: 244 YSILFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILVATDVAA 303 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RGLDV+ ++ V++Y +P D E +VHR GRTGRAG+ G ++ ++ E R L+ I+ + K+ Sbjct: 304 RGLDVDSLTHVIHYSLPDDPEVFVHRSGRTGRAGKDGISMSLIKPEESRKLKQIKMSTKI 363 Query: 367 TIPEVELPNAELLGKRRLEKFAAKV-QQQLESSDLDQ----------YRALLSKIQPTAE 415 I E ++P + + K ++ K+ + LE + D L+ K+ Sbjct: 364 DIVEKKVPTGDAIIKAQVGGVFEKLFTEHLEFFNFDDALIPDLSEFTKEELVHKMLQLQL 423 Query: 416 GEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDR 475 E L R +R + G RE R Sbjct: 424 RELAMFYKDKNDLADQKFNADDRGGDSRRDRDRDRGRDRERGGDRGERREFSRDGGRESR 483 Query: 476 PRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSR--YIGNIKLFASHSTIEL 533 R+ RR+ DM + +G+ D ++ ++ I S + IG+I++ S E+ Sbjct: 484 DRKPRRNNTDMVRFFFNLGKKDQLKKMDMLEIINKSTAKSKKRPDIGDIEILEKFSFFEV 543 Query: 534 PKGMPGEVLQHFTRTRILNKPMNMQLLG 561 K EV++ + K M ++ G Sbjct: 544 EKSFKDEVMKGMQSQKFKGKEMRAEIAG 571 >UniRef50_C0AEG7 DEAD/DEAH box helicase domain protein (Fragment) n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0AEG7_9BACT Length = 606 Score = 612 bits (1579), Expect = e-173, Method: Composition-based stats. Identities = 212/609 (34%), Positives = 309/609 (50%), Gaps = 58/609 (9%) Query: 9 ADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNL 68 A+LGL +L+A++ +G+E+ SPIQA IP LL G DV+G + TGSGKTAAF+LP ++ + Sbjct: 1 AELGLSPELLKAVDKMGFEEASPIQAAVIPLLLAGSDVVGQSSTGSGKTAAFALPAIERV 60 Query: 69 DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQI 128 D +LKA Q+L+L PTRELAVQVAE + + RGV V +YGGQ Y+ Q RAL G Q+ Sbjct: 61 DTKLKAVQVLILCPTRELAVQVAEEVNKLASFKRGVMEVPIYGGQSYERQFRALAAGAQV 120 Query: 129 VVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSA 188 V+GTPGR++DH++RGTL L KLS ++LDE D ML MGF +D+E I+ +PE Q+ FSA Sbjct: 121 VIGTPGRVMDHMERGTLKLDKLSMVILDECDRMLDMGFRDDIEHILKSVPEQRQSLFFSA 180 Query: 189 TMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAA 248 TMP IR + RF+ P V+I++ + + P + Q Y+ V K E L R ++ DF Sbjct: 181 TMPREIRDMISRFIPNPAWVKIETQMQSAPQVDQVYFEVDRRSKLEVLTRLIDLNDFRYG 240 Query: 249 IIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARG 308 IIF TK E+ E L GY L+GD+ QA R +T+E+ K + LIATDVAARG Sbjct: 241 IIFCSTKIMVDELDENLHARGYACDRLHGDITQAQRTRTMEKFKRRGFEFLIATDVAARG 300 Query: 309 LDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTI 368 LDV+ + +V N+D+P D+E Y HRIGRTGRAGR G+A FV RE L+++ R +L I Sbjct: 301 LDVDDLEVVFNFDLPNDAEDYTHRIGRTGRAGRKGKAFTFVSGRELWKLQSMVRFARLDI 360 Query: 369 PEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAAL 428 +P+ + + + R F K++ L++ + ++ + AAL Sbjct: 361 RRERVPSLDQVEEARENVFFEKLRATLDAKKFCPQDRFIDRLLEQG----YPSTDIIAAL 416 Query: 429 LKMAQGERTLIVPPDAPMRPKREFR----------------------------------- 453 L + QG P + + K R Sbjct: 417 LHLMQGGGGGDKPAPSTVPAKSSARFAPPPAPPASPASPAFPEPSAPAASARPARSASRS 476 Query: 454 ------------DRDDRGPRDRNDRGPRGDREDRPRRER-------RDVGDMQLYRIEVG 494 + D D RP++ + VG Sbjct: 477 KPPREADIPDYTQGELPAGDDFADDARADAGSSRPKKAKFERAARTGREPGFTPVFFNVG 536 Query: 495 RDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKP 554 R + +VG +A + + +G I + H+ ++ V++ T RI + Sbjct: 537 RKQLITPADLVGKVAGVTRLPAAVVGAIDIHQRHTLADIADEHVDLVVKKLTGIRIKGES 596 Query: 555 MNMQLLGDA 563 + DA Sbjct: 597 LQPMRASDA 605 >UniRef50_Q2FKY7 DEAD/DEAH box helicase-like n=1 Tax=Methanospirillum hungatei JF-1 RepID=Q2FKY7_METHJ Length = 531 Score = 611 bits (1577), Expect = e-173, Method: Composition-based stats. Identities = 210/571 (36%), Positives = 310/571 (54%), Gaps = 42/571 (7%) Query: 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 +F+DL L I++A+ D+GYE+P+PIQ E IP +L G DV G A TG+GKTAAF +P Sbjct: 3 IPSFSDLQLSPGIIKAIRDIGYEEPTPIQQEVIPLILAGNDVAGQAYTGTGKTAAFGIPA 62 Query: 65 LQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 ++ P + Q +VL P+RELAVQV + + H +G++++ +YGGQ + Q++AL + Sbjct: 63 IELCQPANRNVQTIVLCPSRELAVQVGTELNKLAMHKKGISILPVYGGQPIERQIKALSR 122 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 G QI++GTPGR++DH+KR TL L +S +VLDEAD+ML MGF ED+E I++ IP+ QT Sbjct: 123 GVQIIIGTPGRVIDHIKRKTLLLDAVSLVVLDEADQMLDMGFREDIEEILSHIPKERQTV 182 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 + SAT P I I+RRF K P +V++ T P I Q Y V K + L+R LE Sbjct: 183 ILSATFPPEILDISRRFQKNPIDVKMVHQELTVPQIEQYYIEVREPAKADTLIRVLEFYQ 242 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 IIF T+ A V+ AL+ G+ + L+G M QA R++ + + G+L+ILIATDV Sbjct: 243 PQRTIIFCNTQIAVDAVSSALKAEGFLADGLHGGMAQAQRDKVMNAFRKGQLEILIATDV 302 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 AARG+DVE I LV N+D P D E YVHRIGRT RAGR GRA+ FV RER LR++ R+ Sbjct: 303 AARGIDVEEIDLVCNFDFPQDDEYYVHRIGRTARAGRTGRAISFVSPRERYRLRDVRRST 362 Query: 365 KLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETL 424 + + +P +G ++ A +++ DL R ++ + E D L Sbjct: 363 RAEPEPLPIPTLREIGGKKATTTLADADALMKTGDLTFCRPMIEEKL----AEGADPVAL 418 Query: 425 AAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVG 484 A +LL +A G T + +G Sbjct: 419 ATSLLMIAAGIATEKEDD------------------------------------LEKYLG 442 Query: 485 DMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQH 544 + + R+ GR DG+ VR I+ + N G IGNI++ + + I++P+ EV+ Sbjct: 443 EQAVVRLSAGRQDGILVRDILQIVRNSGRNIQNDIGNIRIGQTATYIDVPEQSVKEVIDV 502 Query: 545 FTRTRILNKPMNMQLLGDAQPHTGGERRGGG 575 +I + + + +RR Sbjct: 503 LNGAQIG--RIRLVAKRGRKQSEIPKRRFNK 531 >UniRef50_A6DIU5 Probable ATP dependent RNA helicase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DIU5_9BACT Length = 537 Score = 610 bits (1575), Expect = e-173, Method: Composition-based stats. Identities = 188/542 (34%), Positives = 286/542 (52%), Gaps = 20/542 (3%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLN-GRDVLGMAQTGSGKTAAFSLPLLQ 66 F LGL+ I + L G+++PSPIQ + IP LL+ D++G AQTG+GKTAAF LP++Q Sbjct: 4 FTALGLEPWITQCLEAKGFKEPSPIQEQAIPVLLSQDHDIIGQAQTGTGKTAAFGLPIVQ 63 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 ++P LK PQ L+L PTRELA+QV E + F K RG+ V LYGG Q RAL++G Sbjct: 64 KIEPGLKKPQALILCPTRELAIQVNEEIKSFCKG-RGITTVTLYGGAPIMDQKRALKKGV 122 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 +VV TPGR + ++ G L+L L LVLDEADEML MGF+EDVE ++ P+ +F Sbjct: 123 DLVVATPGRCIHFIEDGKLELDSLEYLVLDEADEMLNMGFVEDVEKVLKASPDDRTVLMF 182 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SATMP +++I +M ++ +S T I Q + + K AL R ++ E Sbjct: 183 SATMPPRLKKIAESYMHNSITIKAKSETMTMETIDQVVYEAYPENKFAALCRIMDLEKDF 242 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 IIF RTK +V+ L GY + ++GD+ Q RE+ L+R ++ + +LIATDVAA Sbjct: 243 YGIIFCRTKVEVEKVSAGLANEGYAADYIHGDVAQESRERLLKRFRNRNISLLIATDVAA 302 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RG+DV +S +VN+ +P ESYVHRIGRTGRAG+ G A+ + +ER + IE+ Sbjct: 303 RGIDVTDLSHIVNFSLPEQFESYVHRIGRTGRAGKTGTAITLITPKERSKMSFIEKKTGA 362 Query: 367 TIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAA 426 +LP E + K R++K + ++ E++ + A + ++ E+ + Sbjct: 363 KTERRKLPFGEEMIKLRIQKLSKELAHFQENNAELEELAPIKEVAAQLL-EDNSPVDIIT 421 Query: 427 ALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDM 486 ALL G + + + RD R + G D Sbjct: 422 ALLSKIFGTKLDASNYPDINCSAAKKKSRDSRNFKGNTASG-----------------DS 464 Query: 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFT 546 + G+ DG+ + ++ I+ + ++ R I N+K+F S +++ Sbjct: 465 KSLFFAKGKRDGMMPKKVISFISGKSKVAPRGIDNLKVFDKFSLFTTNANDAERIIRSCN 524 Query: 547 RT 548 R Sbjct: 525 RK 526 >UniRef50_Q04VV9 ATP-dependent RNA helicase (Superfamily II) n=4 Tax=Leptospira RepID=Q04VV9_LEPBJ Length = 513 Score = 607 bits (1567), Expect = e-172, Method: Composition-based stats. Identities = 184/499 (36%), Positives = 284/499 (56%), Gaps = 4/499 (0%) Query: 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 + F++L L A I A+ ++G+E+ SPIQ+E IP +L G+D++G AQTG+GKTAAF++P Sbjct: 3 KLKFSELNLSAEIQNAILEMGFEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAIPA 62 Query: 65 LQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 ++ L+ E K Q L+L PTREL +QV+E K+ VV +YGGQ + QL+ALR+ Sbjct: 63 IELLEVESKHLQALILCPTRELVIQVSEQFRKLMKYKGNFEVVPVYGGQEIERQLKALRK 122 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 PQIV+ TPGR++DH++RG++ L+ + +VLDEADEML MGF ED+E I+ P QT Sbjct: 123 NPQIVIATPGRMMDHMRRGSIRLNDIKIVVLDEADEMLDMGFREDMEFILKDTPIDRQTI 182 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 +FSATM E I + +RF K PQ + + + P I Q Y+ + K EAL R +E + Sbjct: 183 MFSATMTEDILTLMKRFQKHPQIIDVTHQKLSAPKIEQIYYEIQENAKGEALARLIEYRN 242 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 A++F TK V E L+ GY + AL+GD+NQ R++ + ++G ++IL+ATDV Sbjct: 243 VKLALVFCNTKAQVDTVVELLKSRGYFAEALHGDLNQKQRDKVMNGFRNGNIEILVATDV 302 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 A RG+DV + V NYD+P D E YVHRIGRTGRAG+ G A F+ ++ L+ IER Sbjct: 303 AGRGIDVNNVEAVFNYDLPRDGEDYVHRIGRTGRAGKKGIAFSFIVGKQIYNLKKIERIN 362 Query: 365 KLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETL 424 + I ++P + L + ++ + +KV+ +++ + +Y + K+ G++ + Sbjct: 363 GIKIEAGKIPTLDDLEETKIHSYTSKVRSIVDAGHIGKYVNQVEKLM----GDDYTALDI 418 Query: 425 AAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVG 484 AAAL KM ++ ++ +R+ + R R R + + G Sbjct: 419 AAALFKMTILRDSVTFDDSVQFESNFKYEERNSFKKKPGKYRDRNFGRSGSGARTKSNPG 478 Query: 485 DMQLYRIEVGRDDGVEVRH 503 G Sbjct: 479 SHSGNSSGNGSHSKFSKGD 497 >UniRef50_Q2LY23 Superfamily II DNA and RNA helicases n=2 Tax=Bacteria RepID=Q2LY23_SYNAS Length = 572 Score = 607 bits (1566), Expect = e-172, Method: Composition-based stats. Identities = 187/587 (31%), Positives = 306/587 (52%), Gaps = 18/587 (3%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGR-DVLGMAQTGSGKTAAFSLPL 64 TFA+ + I++ L+ LG+ +P+Q + IP +LN + D++G+AQTG+GKTAAF +PL Sbjct: 2 KTFAEFEINTDIMKGLDGLGFSVMTPVQEKIIPIVLNRQTDLVGLAQTGTGKTAAFGIPL 61 Query: 65 LQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 +Q D LK Q LVL PTREL VQVA + ++++ + +V +YGG Q LR+ Sbjct: 62 IQLTDTRLKRTQALVLCPTRELCVQVAGDLNLMGRYVQKLKIVPVYGGASIVSQTEELRK 121 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 G Q+VV TPGRL D ++RG +DLS +S +VLDEADEML+MGF +++ I+A P+ T Sbjct: 122 GAQVVVATPGRLHDLIRRGAVDLSGVSWVVLDEADEMLQMGFQDELNAILAVTPDSKNTL 181 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 LFSATMP + I +MK+P E+ + ++ Y+ V + +AL R + Sbjct: 182 LFSATMPREVAAIAANYMKDPLEIIVGRRNAGAENVDHIYYVVSARHRYQALRRIADMNP 241 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 AIIF RT+ T E+ + L +GY++ AL+GD++Q+ R+ + + + + +L+ATDV Sbjct: 242 ELYAIIFCRTRLETREIVDKLIEDGYSADALHGDLSQSQRDHVMHKFRSRNIRMLVATDV 301 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 AARGLDV ++ V+NY +P +S Y HR GRTGRAG+ G ++ +E RE+ +R IER + Sbjct: 302 AARGLDVNDLTHVINYSLPEESSGYTHRSGRTGRAGKKGISIALIETREKHKIRAIERCL 361 Query: 365 KLTIPEVELPNAELLGKRRLEKFAAKVQQQ-LESSDLDQYRALLSKIQPTAEGEELDLET 423 K E +P+ + KRRL V++ +++ +D + +SK + + EEL Sbjct: 362 KKNFEEGRIPSGHEICKRRLLSHMEAVKKTEIDAEHIDPFLPAISKTLESLDREELIKRF 421 Query: 424 LAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDV 483 ++ + R P ++ G R Sbjct: 422 VSMEFNRFLASYRNAPDLNTFEKTPPKKKTREAAAGKPYR----------------LASR 465 Query: 484 GDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQ 543 I G+ DG+ + ++ +++ + IG I++ + S +E ++LQ Sbjct: 466 KKFTPLFINAGKKDGISPKRLMRDLSDAAGMPDVRIGRIEVNNTTSLLEADSRFAPKILQ 525 Query: 544 HFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFS 590 I + + +++ E R +RR+G + Sbjct: 526 ALKSLTINGRYVAVEIDRKTAIRNRPENRRYDSSTAKDRRKGQSRPA 572 >UniRef50_D0JAM0 ATP-dependent RNA helicase n=2 Tax=Blattabacterium RepID=D0JAM0_BLASB Length = 551 Score = 601 bits (1550), Expect = e-170, Method: Composition-based stats. Identities = 179/562 (31%), Positives = 304/562 (54%), Gaps = 15/562 (2%) Query: 4 FETTFADLGL-KAPILEALNDLGYEKPSPIQAECIPHLLNG-RDVLGMAQTGSGKTAAFS 61 + TF + IL+AL +G++ P+ IQ + IP LL+ RDV+ +AQTG+GKTAAF Sbjct: 1 MKKTFKEYNFFNKNILKALEAIGFQYPTTIQEKVIPFLLSSERDVIALAQTGTGKTAAFG 60 Query: 62 LPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 LP++Q ++ +L PQ +L PTREL VQ+ FSK + + +++LYGG D Q+++ Sbjct: 61 LPIIQKVNFDLSIPQAFILCPTRELCVQITRDFYRFSKFLSTIKIISLYGGVSIDSQIKS 120 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 L+ I++GTPGR++D +KR L L K+ L+LDEADEML MGF E+++ I+ +P+ Sbjct: 121 LQNKTHIIIGTPGRIIDLIKRKKLHLEKIKYLILDEADEMLNMGFKEELDYIVKMLPKNR 180 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWG-MRKNEALVRFL 240 Q+ LFSATM + + I R ++ +P E+ + Y+ V +K AL R + Sbjct: 181 QSLLFSATMSKYMNAIARTYLTDPVEIIAGQKNIVSDGVKHIYYMVGHLNKKYSALKRIV 240 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 + IIF TK T E+AE L ++GYN+ AL GD++Q RE + R ++ L L+ Sbjct: 241 DINPGIYGIIFCETKKETKEIAEYLIKDGYNADALYGDLSQTQRESVMNRFRNKNLQFLV 300 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATDVAARGLDV I+ V+NY++P +S+ Y+HR GRTGRAG +G ++ + ++E R L+ Sbjct: 301 ATDVAARGLDVHNITHVINYNLPKESDIYIHRSGRTGRAGNSGISVCIIHSKETRNLKEF 360 Query: 361 ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDL-DQYRALLSKIQPTAEGEEL 419 E+ + + V +PN + + +++L F KV++ + L +Q+ + K + EEL Sbjct: 361 EKRIGKSFERVMVPNGKEICEKQLLYFIEKVKKVVVDEKLMNQFLPEIQKNLEFFDKEEL 420 Query: 420 DLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRE 479 + + +++ ++ + R + +E + Sbjct: 421 IKRFSWIEFNRFISSYKNSKDINPIYTPIYTRKTFMNNKFTKNISSRTKKFRKESFSK-- 478 Query: 480 RRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPG 539 + G D + ++ I + S +IG+I++ ++ S E+ K Sbjct: 479 ---------LFLNRGSKDNLTKLGLINLINQAANNSRIHIGHIEILSNSSLFEVEKRYRN 529 Query: 540 EVLQHFTRTRILNKPMNMQLLG 561 ++L +R L +P+++++ Sbjct: 530 KILIGMSRINYLGRPLSIEIQN 551 >UniRef50_D1B4W7 DEAD/DEAH box helicase domain protein n=2 Tax=Bacteria RepID=D1B4W7_SULD5 Length = 583 Score = 601 bits (1550), Expect = e-170, Method: Composition-based stats. Identities = 193/626 (30%), Positives = 286/626 (45%), Gaps = 50/626 (7%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 TF GL IL+A+N+ G+ +PSP+QAE IP +L G D++ AQTG+GKTAAF LP + Sbjct: 2 QTFESFGLHQDILKAINEAGFTEPSPVQAEAIPLVLQGHDIVAQAQTGTGKTAAFGLPTM 61 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 +D Q+LV+ PTRELA QV++ + + G+ V +YGG Y Q+ + +G Sbjct: 62 SMIDANQNRVQLLVITPTRELATQVSDELYSLGRFC-GIKTVTIYGGSSYSRQIGLIEKG 120 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 ++V TPGR+LD LK G L +VLDEADEML MGF+ED+E I +P+ QT L Sbjct: 121 ASVIVATPGRMLDLLKNGRLPGFAPKMVVLDEADEMLDMGFLEDIEEIFTYLPKERQTLL 180 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQS-SVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 FSATMPE I+R+ + + EP+ V I TT DI Q Y+ + +++A++R L+A + Sbjct: 181 FSATMPEPIKRLASKILHEPKFVSITPKDHTTNEDIEQLYYVINEYERDDAMIRLLDALE 240 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 + +I+F RTK ++ L GY + L+GDM Q RE ++ + +++IL+ATDV Sbjct: 241 PEKSIVFCRTKKEVDRLSTQLMAVGYAAKGLHGDMEQNQRESVIKAFRSSQIEILVATDV 300 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 AARGL+V IS V NY +P D ESYVHRIGRTGRAG+ G A+ V E ++ I + + Sbjct: 301 AARGLNVADISHVFNYHMPFDPESYVHRIGRTGRAGKKGTAITLVTPIEFHSMQRIGKKV 360 Query: 365 KLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETL 424 I +PN + + +L K A ++ + + + A+L + ++ L L Sbjct: 361 GSKIEHRIVPNLRDVKENKLIKIADDIKNAELNENASKLLAILEEEMDMSQIALKLLSNL 420 Query: 425 AAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVG 484 + + L + E R+ G Sbjct: 421 LKENTPVGPDKIGLDKKTLESVVKNIEERENSRGGRSGYRGNSGGRSSGGYRGSSSGSRD 480 Query: 485 DMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQH 544 G DG G Sbjct: 481 GGSYRGTSSGSRDG-------------GGYKG---------------------------- 499 Query: 545 FTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGG-----RNFSGERREGGRG 599 + R + GD+ P G R+GG R+ R Sbjct: 500 -SNPRDAGSRDSRPPRGDSAPRGESRNPFAKEGSSTGSRDGGGYKGNRDTDSRPPRAPRT 558 Query: 600 DGRRFSGERREGRAPRRDDSTGRRRF 625 D R + GRAP+ ++ Sbjct: 559 D-RPSAPRSDAGRAPKTAPRNAYKKD 583 >UniRef50_D2QWU0 DEAD/DEAH box helicase domain protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2QWU0_9PLAN Length = 598 Score = 600 bits (1547), Expect = e-170, Method: Composition-based stats. Identities = 184/606 (30%), Positives = 291/606 (48%), Gaps = 25/606 (4%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 +F DLGL P++ ALN Y +P+ IQ + IP + GRD+ G AQTG+GKTAAF+LPLL Sbjct: 1 MSFEDLGLAEPLVRALNAANYTEPTAIQLQAIPPAIAGRDLQGCAQTGTGKTAAFALPLL 60 Query: 66 QNLDPELKA-------PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQ 118 L + P+ LVL+PTRELA Q+ +++ + +H N + +YGG Q Sbjct: 61 DRLIKNPRQGKLRGRLPRALVLSPTRELAGQIHDSVRRYGRHAMQ-NSLTIYGGVSQVPQ 119 Query: 119 LRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP 178 ++ L G +++ TPGRL D +++G ++LS++ VLDEAD ML MGF+ D+ I+A++P Sbjct: 120 VKGLNAGQDVLIATPGRLCDLMQQGYINLSEIEVFVLDEADRMLDMGFMPDIRRIIAKLP 179 Query: 179 EGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVR 238 + QT LFSATMP I+++ + + +P E+ I+ T I+QS + V K E L Sbjct: 180 QQKQTLLFSATMPPEIQKLASQLLHDPVEINIEPERATADGITQSLYYVPTKHKPELLAS 239 Query: 239 FLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDI 298 L+ E+ A++FVRTK+ + A LE+ G A++G+ +Q+ R++TL K+G + + Sbjct: 240 VLKREEVTRAVVFVRTKHGCNKAALQLEKTGLKVDAIHGNKSQSARQRTLYAFKNGHIQV 299 Query: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLR 358 L+ATDVAARGLDV +S V+NYD+PM+ E+YVHRIGRTGRAG++G A+ F ++ +R LLR Sbjct: 300 LVATDVAARGLDVTGVSHVINYDLPMEPETYVHRIGRTGRAGKSGIAISFCDDEQRGLLR 359 Query: 359 NIERTMKLTIP-EVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGE 417 +++R + IP E E+P+ +++ + + + Sbjct: 360 DVQRILGKKIPVENEMPDGIPGLPANIDRDGGAKRAPWGNKKPFRAGPGGGGGYGGGNRS 419 Query: 418 ELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPR 477 + R+ R+ R + +R R R R Sbjct: 420 SGGSGGSRGFGGRKPYRSGGDRDGQGGGYGAPRDGGSREGGYGRPQGERPARPQRPSNER 479 Query: 478 RERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM 537 IV + Sbjct: 480 GYDGGYEQ--------------TPAEIVAREGLGEGAPRSAGPRPAGRPAGPGAPAAAQG 525 Query: 538 PGEVLQHFTRTRILNKPMNMQLLGDAQP--HTGGERRGGGRGFGGERREGGRNFSGERRE 595 + + G+ + GG RR G G GE+ G + F+ +R+ Sbjct: 526 GPRKFAGPKGKKPFGAKPSGYRSGEGRSEYRGGGNRRPEGVGPNGEKPFGAKRFAVKRKF 585 Query: 596 GGRGDG 601 + + Sbjct: 586 KPKSNK 591 >UniRef50_B3RIS6 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3RIS6_TRIAD Length = 654 Score = 599 bits (1545), Expect = e-169, Method: Composition-based stats. Identities = 154/483 (31%), Positives = 238/483 (49%), Gaps = 11/483 (2%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 + + +F++ ++ +N+ G++ P+PIQA+ P L+GRDV+G+AQTGSGKT A+ Sbjct: 74 IPKPVLSFSEASFPDYVMSEINNQGFKLPTPIQAQSWPVGLSGRDVVGIAQTGSGKTLAY 133 Query: 61 SLPLLQNLDPEL-----KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRY 115 LP + ++ + P L+L PTRELA QV T F + + +N +YGG Sbjct: 134 VLPSIIHIKNQPPLRHGDGPIALILCPTRELAQQVHSVSTTFGR-LARINCACIYGGSPK 192 Query: 116 DVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMA 175 QLR L +G +I V TPGRLLD L+ +L++ S LVLDEAD ML MGF ++ I+ Sbjct: 193 GPQLRELSRGVEICVATPGRLLDFLESRRTNLNRCSYLVLDEADRMLDMGFEPQIKQIIG 252 Query: 176 QIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQS-SVTTRPDISQSYWTVWGMRKNE 234 I QT ++SAT P+ IR + R F+++ ++ I S +TT +I Q K + Sbjct: 253 SIKCPRQTVMWSATWPKEIRTLAREFLRDYVQINIGSSDLTTNHNIKQIVEVCREEEKED 312 Query: 235 ALVRFLEA---EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERL 291 L + L +D I+FV TK + ++ L R+G+ ++GD Q+ R++ L Sbjct: 313 KLCKLLSDILRQDEKKTIVFVETKKKSDYLSRRLVRSGWPVLCIHGDKCQSERDRVLSEF 372 Query: 292 KDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVEN 351 + GR+ +LIATDVAARGLD+ + LV+NYD P +SE YVHRIGRT R+G+ G A F Sbjct: 373 RSGRIPVLIATDVAARGLDISDVKLVINYDFPNNSEDYVHRIGRTARSGKTGTAYTFFTA 432 Query: 352 RERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQ 411 R N+ ++ + P+ LG + A K + ++ D R + + Sbjct: 433 SNIRQSPNLIALLREANQPIN-PDLIQLGDAARAEMAQKHRGKMRGRDRFYNRDRNASNR 491 Query: 412 PTAEGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGD 471 +L + + G +R Sbjct: 492 YPYAKSKLSGSYNSYGMNNSHGGFSANYKATSNFSSNSFSKHNRPSDFHDKSMSSSKFTS 551 Query: 472 RED 474 Sbjct: 552 HTP 554 >UniRef50_D1U888 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U888_9DELT Length = 551 Score = 599 bits (1545), Expect = e-169, Method: Composition-based stats. Identities = 194/596 (32%), Positives = 290/596 (48%), Gaps = 47/596 (7%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGR-DVLGMAQTGSGKTAAFSLPL 64 T F +LGL L AL G+ P+PIQ IP LL G D++G AQTG+GKTAAF LP+ Sbjct: 2 TDFKELGLSEETLAALESKGFTCPTPIQERTIPLLLQGAVDIVGQAQTGTGKTAAFGLPI 61 Query: 65 LQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 ++ K Q LVL PTRELA+QVA+ + K + + V+ +YGGQ +QL+AL+ Sbjct: 62 IETAVENAKRVQALVLTPTRELAIQVADEINSL-KGKKRIRVLPVYGGQAIHMQLKALKS 120 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 G +VVGTPGR++DHLKRGTL L +L VLDEADEM MGF++DV I+ +T Sbjct: 121 GVDVVVGTPGRIMDHLKRGTLHLDELDFFVLDEADEMCNMGFVDDVREILKSANTDRRTL 180 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 LFSATMP + RI + FM + + + +++ P Q + V + EAL R ++AE Sbjct: 181 LFSATMPHEVMRIAKEFMGDYELITVKAEKNDIPLTKQVFHEVADSDRFEALCRVVDAEP 240 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 ++F RT+ VA L GY + ++GD++QA RE+ L R K + IL+ATDV Sbjct: 241 DFYGLVFTRTRADADRVASRLTERGYPAEPIHGDLSQARREEILGRFKKRLVTILVATDV 300 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 AARG+DV ++ VVN+ +P D +++VHR GRTGRAG+ G A+ + E R L I ++ Sbjct: 301 AARGIDVPDLTHVVNFALPQDPQTFVHRTGRTGRAGKEGVAISLIAPSEFRRLMFITKSS 360 Query: 365 KLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETL 424 + I + +LP + + + + ++ Y + + E + E + Sbjct: 361 GIDITKAKLPCIHDVIYSKKSRMVDGLDGIIQEEAHTPYLPMARDLL-----EGREPEDV 415 Query: 425 AAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVG 484 AALLK A G+ + R R D Sbjct: 416 VAALLKHAFGDELVESSYREINTVTAANRGRAD--------------------------- 448 Query: 485 DMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQH 544 +GR DG+ + V I+ I I ++++ +T +P V+ Sbjct: 449 ----LVCSLGRVDGMNPKDFVDFISQAARIKPWSIQHVRVQGERTTFTVPGPEAELVVS- 503 Query: 545 FTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERREGGRGD 600 R+L++ + P RR + G ++ R D Sbjct: 504 ----RVLSRDGRPLVSQGDSPKKPPYRRDYPKKGAP----GPGKHPFKKPYKPRKD 551 >UniRef50_C7NBE3 DEAD/DEAH box helicase domain protein n=3 Tax=Leptotrichia RepID=C7NBE3_LEPBD Length = 571 Score = 597 bits (1541), Expect = e-169, Method: Composition-based stats. Identities = 192/571 (33%), Positives = 297/571 (52%), Gaps = 43/571 (7%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGR-DVLGMAQTGSGKTAAFSLPLLQ 66 F D GL +L AL+ G+E+PS IQ +P LL R ++G AQTG+GKTAAF +P+L+ Sbjct: 4 FEDFGLSTEMLNALSKKGFEEPSEIQKLVVPELLKERTHLIGQAQTGTGKTAAFGIPILE 63 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 +D + K + L+LAPTRELA QV++ + K + + V+A+YGG + Q++ L+ G Sbjct: 64 TIDAD-KTVRALILAPTRELANQVSDEIYSL-KGEKDIKVLAVYGGASIENQIKRLKAGV 121 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 IVVGTPGR++D + + L ++ L VLDEADEML MGF+ED+E I+ + + + F Sbjct: 122 DIVVGTPGRVMDLINKKVLKVNGLDYFVLDEADEMLNMGFLEDIEEILEKTNDEKKMLFF 181 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SAT+P+AI I +RFM E + ++++ T Q Y+ V K EAL R L+ E Sbjct: 182 SATIPKAILAIAKRFMPEHKLLKVEKKELTTNLTEQIYYEVKQEDKFEALCRVLDYEQNF 241 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 I+F RTK+ +V L+ Y++ ++GD+ QALR++ L+ K L IL+ATDVAA Sbjct: 242 YGIVFCRTKSEVDDVTNKLKARNYDAECIHGDITQALRQKALDLFKKQILTILVATDVAA 301 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RG+DV ++ V+NY IP ++ESYVHRIGRTGRAG G A+ FV RE L I+R K Sbjct: 302 RGIDVSNLTHVINYSIPQEAESYVHRIGRTGRAGHKGIAITFVTPREASKLAQIKRVTKT 361 Query: 367 TIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAA 426 I ++PN E + + + E A V + ++ SD + Y L ++ E D + A Sbjct: 362 DIKREDIPNVEEILEAKKEALVAYVDEIIKESDFNAYEELAQRLI-----EGRDARQVLA 416 Query: 427 ALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDM 486 ++L+ + L + K + D+ Sbjct: 417 SVLRHVYEDEFLPDNYNEIADVKVKINDK------------------------------- 445 Query: 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFT 546 I +G DG V ++ + + R + ++K+ +S I +P +++ Sbjct: 446 TRLFIALGSKDGYNVGRLLDLLNKKARTPGRKVKDVKIMDKYSFITVPLQEAEYIMRALN 505 Query: 547 RTRILNKPMNMQLLGDAQPHTGGERRGGGRG 577 K + GG +G + Sbjct: 506 SK----KDAKPLVEEATGSRNGGGEKGDKKS 532 >UniRef50_C6BZ63 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BZ63_DESAD Length = 521 Score = 597 bits (1540), Expect = e-169, Method: Composition-based stats. Identities = 201/549 (36%), Positives = 294/549 (53%), Gaps = 36/549 (6%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNG-RDVLGMAQTGSGKTAAFSLPLLQ 66 F +LGL I+EAL G+ P+PIQ + IP LL+G +D++G AQTG+GKTAAF LP+++ Sbjct: 4 FRNLGLSDAIIEALEKKGFTAPTPIQEKTIPMLLSGEKDIVGQAQTGTGKTAAFGLPIIE 63 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 N+ Q +VL PTRELA+QVA+ + F + R V V +YGGQ QL+AL++G Sbjct: 64 NVREGAGHVQAIVLTPTRELAMQVADEIISF-RGSRKVFVATVYGGQPMLPQLKALKRGA 122 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 IVVGTPGR+LDH++R TLDLS+++ VLDEADEM MGF+E+V IM E +T LF Sbjct: 123 DIVVGTPGRVLDHIRRKTLDLSQINNFVLDEADEMCNMGFLEEVSEIMENAGEDRRTLLF 182 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SATMP + I ++FM + V ++ P + V + EAL R ++A+ Sbjct: 183 SATMPREVMNIAKKFMGDYDVVSVKREKDEAPLTELIFHEVNERDRFEALCRVVDAQPEF 242 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 ++F RT+ VA L GY + ++GD++QA RE L R + R IL+ATDVAA Sbjct: 243 YGLVFCRTRADADRVAGTLAERGYPAEPIHGDLSQARREDILMRFRKRRCKILVATDVAA 302 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RG+DV +S VVN+ +P D +S+VHR+GRTGRAG+ G A+ + RE LR I + KL Sbjct: 303 RGIDVPDLSHVVNFALPQDPQSFVHRVGRTGRAGKKGVAVTLITPREFGKLRYITKITKL 362 Query: 367 TIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAA 426 + + LP + + + + A++ + +E+ Y L ++ E +D A Sbjct: 363 RVDKKPLPTIDQVIDVKKSRMGAELSEIVEAGKHLSYLDLAHELL-----EGVDPIEAVA 417 Query: 427 ALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDM 486 ALLK +QG D R R + G R Sbjct: 418 ALLKHSQGGVL------------------DKRSYRKIEECGGPAANRGR----------- 448 Query: 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFT 546 + +GR G+ R +V I I+ I ++K+ ST +P G V++ Sbjct: 449 VRFTAHIGRAHGMTPRKLVDMICRRARINPVRIQHVKIQGRQSTFTVPAGDSDNVMRAVN 508 Query: 547 RTRILNKPM 555 R +P+ Sbjct: 509 RASKNERPL 517 >UniRef50_C5SI45 DEAD/DEAH box helicase domain protein n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SI45_9CAUL Length = 605 Score = 597 bits (1539), Expect = e-169, Method: Composition-based stats. Identities = 202/625 (32%), Positives = 314/625 (50%), Gaps = 40/625 (6%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 TTF DLGL A +L L GY P+PIQA+ IP LLN D+LG+AQTG+GKTAAF+LP+L Sbjct: 2 TTFKDLGLSASLLSTLEKEGYHTPTPIQAQAIPILLNKHDLLGIAQTGTGKTAAFALPIL 61 Query: 66 QNLD-----PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 ++ P ++ ++LVL+PTRELA Q+A++ +SK + G+ + ++GG +Y Q + Sbjct: 62 HHILSNRIIPAPRSCRVLVLSPTRELATQIADSFKAYSKGL-GLQIATIFGGVKYGPQYK 120 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 AL+ G I+V TPGRL+DH+++ T+DL + LVLDEAD+ML MGFI+ + + +++P Sbjct: 121 ALQGGIDILVATPGRLIDHIEQKTIDLKAVEHLVLDEADQMLDMGFIKPIRQVASRLPAQ 180 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 Q FSATMP+ I + + P++V I TT ++Q + RK L Sbjct: 181 RQNLFFSATMPKEIAGLANELLTNPKKVEITPEATTAERVTQQVIFIEQQRKRALLSELY 240 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 E +IF RTK VA L+ G +AA++GD NQ+ RE+ L+ K GR+ L+ Sbjct: 241 ADEKLARTLIFTRTKRGADRVAAYLQAGGVEAAAIHGDKNQSQRERALQAFKAGRVRALV 300 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATD+AARG+DV+ ++ V+NY++P +E+YVHRIGRT RAG+ G ++ V + ER+LL++I Sbjct: 301 ATDIAARGIDVDNVTHVINYELPFVAEAYVHRIGRTARAGKEGHSITLVADDERKLLKDI 360 Query: 361 ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELD 420 ER + IP + +R+ + + L S ++ + ++ TA + D Sbjct: 361 ERITRQRIPSWD--------RRKDQALKLLDEAILASGQTEKPKTPDRVVEKTARHLDPD 412 Query: 421 LETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRER 480 E + + P R +R RD R G + +R R+ Sbjct: 413 AERVH-------------KRSRNRPNRDERRGNGRDGDNSRGERTFGKKDAFGNRAERQA 459 Query: 481 RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFA----SHSTIELPKG 536 R + R + D + + E + R G+ F + PKG Sbjct: 460 RFERPERTERYDPMASDRAPTKA-----SREFPAAERAFGDKPRFDGPRGEKPRFDKPKG 514 Query: 537 MPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERREG 596 + R + D +P R G R G R + + + Sbjct: 515 ERP--FKKRDDARGEGRSD--TRTFDERPARPAAERAGERPTGERRVDERKKKPFGKSAS 570 Query: 597 GRGDGRRFSGERREGRAPRRDDSTG 621 G+ GR+ + + R + S G Sbjct: 571 GKLGGRKTNTKPRAHHNEPVNRSEG 595 >UniRef50_Q26CN9 ATP-dependent RNA helicase n=2 Tax=cellular organisms RepID=Q26CN9_9BACT Length = 644 Score = 596 bits (1538), Expect = e-169, Method: Composition-based stats. Identities = 193/559 (34%), Positives = 301/559 (53%), Gaps = 20/559 (3%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLN-GRDVLGMAQTGSGKTAAFSLPL 64 F LGL P+L L D+G+E P+ IQ + IP LL D +G+AQTG+GKTAAF LPL Sbjct: 13 KNFEVLGLSQPLLNGLADMGFENPTEIQQQSIPILLKHDGDFIGLAQTGTGKTAAFGLPL 72 Query: 65 LQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 L +D + Q L+LAPTRELA Q+ M SKH+ +NVV ++GG Q+R +R+ Sbjct: 73 LDLIDVNSREVQALILAPTRELAQQICGQMEQMSKHLGKLNVVPVFGGANIMNQIRDIRR 132 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 G QI+V TPGRL+D +KR + L L +VLDEADEML MGF ED++ I+++ G Sbjct: 133 GAQIIVATPGRLMDLMKRREVKLDALKYMVLDEADEMLNMGFKEDIDFILSKSDTGRNIW 192 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 LFSATM I+RI +M +P+EVRI +I + K EAL RFL+ ++ Sbjct: 193 LFSATMAREIKRIVDTYMVQPEEVRINPKNIVNKNIEHQSIQLKASDKIEALRRFLDYDE 252 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 ++F RTK T VA+ L NGY + AL+GDM+QA R+ ++R ++ L +LIATDV Sbjct: 253 DMFGVVFCRTKRDTQNVADQLNNNGYATEALHGDMSQAQRDAAMKRFRNKNLKLLIATDV 312 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 AARG+DV+ I+ V+++ +P D E Y HR GRT RAG+ G ++ + + R L+ I + Sbjct: 313 AARGIDVDDITHVIHFALPDDPEFYTHRSGRTARAGKKGVSIALITRGDNRKLKFIASKL 372 Query: 365 KLTIPEVELPNAELLGKRRLEKFAAK-VQQQLESSDLDQYRALLSKIQPTAEGEELDLET 423 + + E+P E + ++R+ +++ ++Q++ +Q + + EE+ + Sbjct: 373 GIEFTQGEVPALEAITQKRISRWSENMIKQEINEKIDEQLVNAVQESFADVTKEEIIAKL 432 Query: 424 LAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDV 483 L + + + + + RDRDD R+R R R Sbjct: 433 LTKEYNSIYKRNSISDLNDRS------KGRDRDDSPRRERGKR-----------TSRGTE 475 Query: 484 GDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQ 543 M+ Y I +G D + ++G + + IS IG I + +HS +++ + + ++L Sbjct: 476 EGMKTYFINLGLKDDINKGALLGYVCDTTGISGAQIGRIVMDKTHSYMDVAEDVASQIL- 534 Query: 544 HFTRTRILNKPMNMQLLGD 562 + + + Sbjct: 535 TLDGKQRNGHDLRVNEHKG 553 >UniRef50_Q82T78 RhlE; ATP-dependent RNA helicase RhlE n=1 Tax=Nitrosomonas europaea RepID=Q82T78_NITEU Length = 498 Score = 596 bits (1537), Expect = e-168, Method: Composition-based stats. Identities = 160/465 (34%), Positives = 252/465 (54%), Gaps = 9/465 (1%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 + TFA LGL + IL A+ND GY P+PIQA+ IP +L G+DV+ AQTG+GKTA F+LP Sbjct: 3 NDVTFAQLGLSSEILHAVNDEGYVNPTPIQAQVIPSILAGKDVMASAQTGTGKTAGFTLP 62 Query: 64 LLQNLD--------PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRY 115 LL L P + L++APTRELA+Q+ E++ + K++ + ++GG Sbjct: 63 LLYRLQAYANTSVSPARHPVRALIMAPTRELAMQIDESVRKYGKYLA-LRTAVVFGGINI 121 Query: 116 DVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMA 175 + Q+ AL+ G +I+V TPGRLLD +++ ++ SK LVLDEAD ML MGF+ D++ +MA Sbjct: 122 EPQIAALQAGVEILVATPGRLLDLVEQKAVNFSKTEILVLDEADRMLDMGFLPDIKRVMA 181 Query: 176 QIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA 235 + Q+ +FSAT IR++ +K+P + T IS V K Sbjct: 182 LLSPQRQSLMFSATFSGEIRKLADSLLKQPVRIEAAVQNTVNESISHVIHWVKPDSKFAL 241 Query: 236 LVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGR 295 L+ + ++ A+IFV+TK+ +A+ L R+ ++ A++GD NQ R Q L K G Sbjct: 242 LLHLIRQQNLKQALIFVKTKHGASHLAQMLSRHEISAVAIHGDRNQQQRTQALAEFKHGD 301 Query: 296 LDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERR 355 + IL+ATDVAARG+D+E++S V+NY++P + E YVHRIGRTGRAG G+A+ V E+ Sbjct: 302 VQILVATDVAARGIDIEKLSHVINYELPGNPEDYVHRIGRTGRAGSKGKAISLVSEHEKE 361 Query: 356 LLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAE 415 LL NIE+ + + ++ + R S ++ S+ + + Sbjct: 362 LLANIEKLLNAKLETEQIAGFDAEQFARSLPDRKNRMSAGNSRYGNKPMENGSEKSRSEK 421 Query: 416 GEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGP 460 +L + + + + + + + + P Sbjct: 422 HRKLPSSQKYSGSRRGGTQKYSDPIFTQPYVPQANSTQSTTPKQP 466 >UniRef50_C5LBR0 RNA helicase, putative n=4 Tax=Perkinsus marinus ATCC 50983 RepID=C5LBR0_9ALVE Length = 674 Score = 594 bits (1532), Expect = e-168, Method: Composition-based stats. Identities = 147/418 (35%), Positives = 228/418 (54%), Gaps = 16/418 (3%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 + TF + L IL+ +N G+EKP+PIQ + P L+GRD++G+A+TGSGKT AF Sbjct: 207 VPNPIQTFDEACLPDYILKEINRAGFEKPTPIQVQGWPVALSGRDMVGIAETGSGKTLAF 266 Query: 61 SLPLLQNLDPEL-----KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRY 115 +P + +++ + P +L+LAPTRELA+Q+ F + R + +YGG + Sbjct: 267 MIPAVIHINAQPYLQKGDGPIVLILAPTRELALQIKAECDRFGRSSR-ITNTCVYGGTQR 325 Query: 116 DVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMA 175 Q RAL+ G +I + TPGRL+D L+ GT +L +++ LV+DEAD ML MGF V I++ Sbjct: 326 GPQARALQNGVEICIATPGRLIDFLESGTTNLKRVTYLVMDEADRMLDMGFEPQVRKIVS 385 Query: 176 QIPEGHQTALFSATMPEAIRRITRRFMKE-PQEVRIQSSVTTRPDISQSYWTVWGMRKNE 234 QI QT ++SAT P+ ++ + R E P V + S +I Q V K E Sbjct: 386 QIRPDRQTLMWSATWPKEVQHLARDICNEEPVLVTVGRSGHACHNIQQYVEVVENNVKPE 445 Query: 235 ALVRFLEAED-------FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQT 287 L+ ++A +IF TK ++ L R+G+ + +++GD Q+ R+ Sbjct: 446 RLLALMQAASAATGGGWTAKTLIFCDTKRGADDITRLLRRDGWPALSIHGDKKQSERDWV 505 Query: 288 LERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALL 347 L + K GR I+IATDVA+RGLDV+ + V+NYD P E YVHRIGRTGRAG +G A Sbjct: 506 LNQFKTGRSAIMIATDVASRGLDVKDVKYVINYDFPGTIEDYVHRIGRTGRAGASGVAYS 565 Query: 348 FVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRA 405 F + +L R + ++ +P A ++ + + + + + + R Sbjct: 566 FFSPDKGKLARQLVNCLREANQ--SVPEALETIAFANDRSNSGGKGRGKGNYGGKGRG 621 >UniRef50_Q8MZI3 CG10077, isoform A n=15 Tax=Eukaryota RepID=Q8MZI3_DROME Length = 818 Score = 593 bits (1529), Expect = e-168, Method: Composition-based stats. Identities = 146/461 (31%), Positives = 227/461 (49%), Gaps = 10/461 (2%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 + F + G ++ + G+ KP+ IQA+ P ++GRD++G+AQTGSGKT A+ Sbjct: 152 VPTPSIEFEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAY 211 Query: 61 SLPLLQNLDPELK-----APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRY 115 LP + +++ + + P LVLAPTRELA Q+ + +F + V ++GG Sbjct: 212 VLPAVVHINNQPRLERGDGPIALVLAPTRELAQQIQQVAIEFGSNTH-VRNTCIFGGAPK 270 Query: 116 DVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMA 175 Q R L +G +IV+ TPGRL+D L+RGT L + + LVLDEAD ML MGF + IM Sbjct: 271 GQQARDLERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQ 330 Query: 176 QIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQS-SVTTRPDISQSYWTVWGMRKNE 234 QI Q ++SAT P+ +R++ F+ +V I S S++ +I Q K Sbjct: 331 QIRPDRQVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDENEKLM 390 Query: 235 ALVRFLEA---EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERL 291 L++ L E+ IIFV TK E+ + R G+ + A++GD +Q R+ L Sbjct: 391 KLIKLLTDISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSF 450 Query: 292 KDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVEN 351 ++GR IL+ATDVAARGLDV+ + V+NYD P +SE YVHRIGRTGR+ G A + Sbjct: 451 RNGRHSILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTH 510 Query: 352 RERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQ 411 ++ + ++ + + K + + Q R Sbjct: 511 SNANKANDLIQVLREANQTINPKLMNMAMNGGYNKRGGGMGGGYRGGNGYQGRNPQMGGG 570 Query: 412 PTAEGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREF 452 + A + + + + PP +P+ Sbjct: 571 YNGGNNYRNNNGPGATMNRNSFNGGSAGGPPRFDQKPRTSP 611 >UniRef50_C8PQM8 DEAD/DEAH box helicase n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PQM8_9SPIO Length = 646 Score = 592 bits (1528), Expect = e-167, Method: Composition-based stats. Identities = 205/633 (32%), Positives = 322/633 (50%), Gaps = 28/633 (4%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNG-RDVLGMAQTGSGKTAAFSL 62 + +F DLGL +L A+ G+E+P+PIQ IP LLNG +V+ A+TG+GKTAA+ L Sbjct: 16 MDISFRDLGLDESVLNAVAAKGFEEPTPIQVLAIPRLLNGDANVIAKARTGTGKTAAYGL 75 Query: 63 PLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 PL+Q L + P+ LVL PTRELA+QVA + F + + +YGG QLR L Sbjct: 76 PLVQELREPREKPRALVLVPTRELALQVASEIESFKEGTHP-RITTVYGGASIVEQLRNL 134 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 ++G +IV GTPGR++DHL+RG+L+L + +LDEADEML MGFIED+ETI + + Sbjct: 135 KRGCEIVAGTPGRVIDHLERGSLNLDSIEYFILDEADEMLNMGFIEDIETIFKKANPDSR 194 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 +FSATMP+ I +I FM E + V ++S P Q +W V K+EALVR ++ Sbjct: 195 VLMFSATMPKQILKIAADFMGEYEIVEEEASEEPLPLTEQFFWMVREEDKSEALVRLIDT 254 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 + ++F +TK VA+ L+ Y +AAL+GD+ Q RE+ L R + G+ IL+AT Sbjct: 255 AENFYGLVFCQTKVDADAVAKELDERHYEAAALHGDIPQGQREKILSRFRAGKTRILVAT 314 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 DVAARG+D+E I+ VVNY IP D +Y HRIGRTGRAG G A+ F+ ERR + + R Sbjct: 315 DVAARGIDIEGITHVVNYSIPYDGPTYTHRIGRTGRAGAKGTAVSFIRPNERRRIDYLRR 374 Query: 363 TMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQ-----YRALLSKIQPTAEG- 416 + + E ++P+ E + ++ ++ + +++QL++ + + L ++ + Sbjct: 375 HARGELLEGKIPSIEKVLAQKQDRLFSDLRRQLDTVQAEHTVNKSFIELARELLAGNKAS 434 Query: 417 ----EELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGD- 471 EE + A+ A + + +A + + + + G Sbjct: 435 LAATEETAADGTDTAVANTANVDEAVAFGAEAAVSGVKHIDSAELLAAVLQLHYGSVLSA 494 Query: 472 --------REDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIK 523 +R + + + +GR DG R + + I + I+ Sbjct: 495 SHYRNIKIPRSEEKRGKPSGENTVRLYVGLGRKDGTSKRSLAQFFSTLLSIPEHAVDRIE 554 Query: 524 LFASHSTIELPKGMPGEVLQ------HFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRG 577 LF S +LP E L+ + I K N+ +AQP ++ + Sbjct: 555 LFDRFSLADLPADAAHEALRLSKKRANMPHIHIDTKSDNVT-DKNAQPAGSAKKSSSRKL 613 Query: 578 FGGERREGGRNFSGERREGGRGDGRRFSGERRE 610 G RRE R++ G + ++R+ Sbjct: 614 REGNRREAFFREKDTRKKHPLSAGSAAAYKKRK 646 >UniRef50_C4ZJL9 DEAD/DEAH box helicase domain protein n=1 Tax=Thauera sp. MZ1T RepID=C4ZJL9_THASP Length = 545 Score = 592 bits (1528), Expect = e-167, Method: Composition-based stats. Identities = 180/518 (34%), Positives = 267/518 (51%), Gaps = 27/518 (5%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 +FADLGL +L+A+ D GY +P+PIQ + IP ++ G+DV+G AQTG+GKTA F+LPLL Sbjct: 1 MSFADLGLIPELLQAVTDAGYTEPTPIQRQAIPIVIAGKDVMGGAQTGTGKTAGFTLPLL 60 Query: 66 QNL--------DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDV 117 + P + L+LAPTRELA+QV E++ +SKH+ + V +YGG Sbjct: 61 HRIARHANTSTSPARHQTRALILAPTRELAMQVFESVKTYSKHLP-LRSVCVYGGVDIRP 119 Query: 118 QLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQI 177 Q LR+G +IV+ TPGRLLDHL++ +++LS++ LVLDEAD ML MGFI D++ I+A + Sbjct: 120 QQAELRRGIEIVIATPGRLLDHLEQKSINLSQVEVLVLDEADRMLDMGFIPDIKRILALL 179 Query: 178 PEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALV 237 P+ Q+ LFSAT + I+R+ + +KEPQ + + I+ V K L Sbjct: 180 PKQRQSLLFSATFSDEIKRLADQMLKEPQLIEVARRNMVSETITHVVHPVSSGMKRNLLA 239 Query: 238 RFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLD 297 L + A++FV TK +A LER+G ++ A++GD Q R TLE K G+L Sbjct: 240 HLLRHKPDTQALVFVDTKLMCGRLAHYLERSGISADAIHGDKGQQQRTDTLEAFKSGKLR 299 Query: 298 ILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLL 357 +L+ATDVAARGLD++ + V+N+++P +E YVHRIGRTGRAG G A+ V + E+ L Sbjct: 300 VLVATDVAARGLDIDELPFVINFELPHTAEDYVHRIGRTGRAGHHGYAISLVSSEEKHWL 359 Query: 358 RNIERTMKLTIPEVELPNAEL------------------LGKRRLEKFAAKVQQQLESSD 399 IE+ +KL IP+ +P + E A + Sbjct: 360 SEIEKLIKLQIPQERVPGFDPDPDFHEAGSRGHRGRRPAAAAADTEAQAPAARSGGRERG 419 Query: 400 LDQYRALLSKIQPTAEGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRG 459 +++ + EG +++ P + P R +R R Sbjct: 420 VERSAEARREPAREREGLRAGPRRGRSSVAADGFDFSKPYEPLNPPRRGRRADSAHRGRC 479 Query: 460 PRDRNDRGPRGDREDRPRRERRDVGDMQLYRIEVGRDD 497 + R P RR R + G Sbjct: 480 RQARPATSPPASDRGAARRPRAQIRGTPAPYSPHGGAQ 517 >UniRef50_Q0HYG8 DEAD/DEAH box helicase domain protein n=78 Tax=Bacteria RepID=Q0HYG8_SHESR Length = 549 Score = 592 bits (1528), Expect = e-167, Method: Composition-based stats. Identities = 158/486 (32%), Positives = 260/486 (53%), Gaps = 5/486 (1%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 +F+ LGL PI +A+ + GY+ PSPIQA+ IP +L G+DV+ AQTG+GKTA F+LPLL Sbjct: 1 MSFSSLGLSLPIQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL 60 Query: 66 QNL----DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 + L + + LVL PTRELA QV+E++ + K++ + ++GG + Q++ Sbjct: 61 ELLSKGNKAKAGQIRALVLTPTRELAAQVSESVETYGKYLP-LRSAVVFGGVPINPQIQK 119 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 LR G ++V TPGRLLD +++ + ++L LVLDEAD ML MGFI D++ I+A +P Sbjct: 120 LRHGVDVLVATPGRLLDLVQQNVVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKR 179 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 Q +FSAT + IR + + + +P E+ + + Q V +K+ L++ ++ Sbjct: 180 QNLMFSATFSDEIRELAKGLVNQPVEISVTPRNAAANTVKQWICPVDKNQKSALLIQLIK 239 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 ED+ ++F RTK+ +A++L + ++AA++G+ +Q R + L K G + +L+A Sbjct: 240 QEDWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLVA 299 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 TD+AARGLD++++ VVN+D+P E YVHRIGRTGRAG +G+A+ V + E +LLR+IE Sbjct: 300 TDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSSEEFKLLRDIE 359 Query: 362 RTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDL 421 R + + E+ A + + Q + + G D Sbjct: 360 RLINRVLERQEIEGFGPAHALPESTLIAHGKDNKVKAVASQRKHRSAGKPTPRTGTGRDG 419 Query: 422 ETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERR 481 ++ AQ + + + + + R +P+ +R Sbjct: 420 RKTPDSIDGSAQQKNSNPNQGQRNNQGQHKRPQSSKNAEHKNTHSSTEAGRTPKPQDKRP 479 Query: 482 DVGDMQ 487 G Sbjct: 480 QHGKGP 485 >UniRef50_P24782 ATP-dependent RNA helicase dbp2 n=63 Tax=Eukaryota RepID=DBP2_SCHPO Length = 550 Score = 591 bits (1524), Expect = e-167, Method: Composition-based stats. Identities = 138/390 (35%), Positives = 221/390 (56%), Gaps = 11/390 (2%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 + + TTF + G +L+ + LG+E P+PIQ + P ++GRD++G++ TGSGKT ++ Sbjct: 117 VPKPVTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSY 176 Query: 61 SLPLLQNLDPEL-----KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRY 115 LP + +++ + P +LVLAPTRELAVQ+ + T F K R + +YGG Sbjct: 177 CLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSR-IRNTCVYGGVPR 235 Query: 116 DVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMA 175 Q+R L +G +I + TPGRLLD L +L +++ LVLDEAD ML MGF + I+ Sbjct: 236 GPQIRDLIRGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVD 295 Query: 176 QIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQS-SVTTRPDISQSYWTVWGMRKNE 234 QI QT +FSAT P+ ++R+ R ++ + +V + S + +I Q V K Sbjct: 296 QIRPDRQTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRA 355 Query: 235 ALVRFLEA---EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERL 291 L + +E + + +IF TK ++ L ++G+ + A++GD Q R+ L Sbjct: 356 RLGKDIEEVLKDRDNKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEF 415 Query: 292 KDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVEN 351 + G+ I++ATDVA+RG+DV+ I+ V NYD P ++E YVHRIGRTGRAG G A + + Sbjct: 416 RTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTS 475 Query: 352 RERRLLRNIERTMKLTIPEVELPNAELLGK 381 + R + + +++ P E + + Sbjct: 476 DNAKQARELVSILSEAKQDID-PKLEEMAR 504 >UniRef50_B2V9H9 DEAD/DEAH box helicase domain protein n=4 Tax=Hydrogenothermaceae RepID=B2V9H9_SULSY Length = 405 Score = 590 bits (1521), Expect = e-167, Method: Composition-based stats. Identities = 166/405 (40%), Positives = 250/405 (61%), Gaps = 3/405 (0%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 M+ TF DL L L++L++LGY KP+ IQ + IP ++ G+D++ AQTG+GKTAAF Sbjct: 1 MSNQGKTFKDLNLSKETLKSLDELGYSKPTEIQEKAIPAVMTGKDLVAQAQTGTGKTAAF 60 Query: 61 SLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 +P+++ ++P+ K Q L+L PTRELA+QVA+ + + K+ + V +A+YGG+ Q+ Sbjct: 61 GVPIVEKVNPKQKKVQALILVPTRELAIQVAKEIKELGKNKK-VYTLAVYGGKSISHQIN 119 Query: 121 ALRQGPQIVV-GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179 L++G +VV GTPGR+ D L+RG L+L + VLDEAD ML MGFI+D+E IM+ +PE Sbjct: 120 FLKKGSDVVVVGTPGRVRDLLERGVLNLDNVKMFVLDEADRMLEMGFIDDIEEIMSYLPE 179 Query: 180 GHQTALFSATMPEAIRRITRRFMK-EPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVR 238 Q LFSATMP+ I + F+ + +R++ T I Q + V K + L Sbjct: 180 DRQNLLFSATMPKEILDLAEEFLNENYETIRVKPDEVTVEKIKQIIYRVNPRDKFKKLTE 239 Query: 239 FLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDI 298 L + + IIF +TK E+AE L G+N++A++GD +Q RE L + G+L I Sbjct: 240 VLSQNEAEKVIIFTQTKIEADELAERLNEEGFNASAIHGDFSQKKRETVLHNFRTGKLKI 299 Query: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLR 358 L+ATDVAARGLD++ + LV+NY +P D+ESY+HRIGRTGRAGR G A+ + E + L+ Sbjct: 300 LVATDVAARGLDIKGVDLVINYGLPRDAESYIHRIGRTGRAGREGTAISIMTPSEDKQLQ 359 Query: 359 NIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQY 403 NI++ K I + + L + +K + K + + Q Sbjct: 360 NIQKKTKANIEVINEAQEKKLSSAQKDKSSQKERSSRNQTRRRQR 404 >UniRef50_P25888 ATP-dependent RNA helicase rhlE n=363 Tax=root RepID=RHLE_ECOLI Length = 454 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 158/442 (35%), Positives = 239/442 (54%), Gaps = 7/442 (1%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 +F LGL IL A+ + GY +P+PIQ + IP +L GRD++ AQTG+GKTA F+LPLL Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 66 QNLDPE------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119 Q+L + + L+L PTRELA Q+ E + D+SK++ + + ++GG + Q+ Sbjct: 61 QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYL-NIRSLVVFGGVSINPQM 119 Query: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179 LR G ++V TPGRLLD + + L ++ LVLDEAD ML MGFI D+ ++ ++P Sbjct: 120 MKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPA 179 Query: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239 Q LFSAT + I+ + + + P E+ + T ++Q V RK E L Sbjct: 180 KRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHM 239 Query: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299 + ++ ++F RTK+ +AE L ++G SAA++G+ +Q R + L K G + +L Sbjct: 240 IGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVL 299 Query: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359 +ATD+AARGLD+E + VVNY++P E YVHRIGRTGRA G AL V E +LLR+ Sbjct: 300 VATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRD 359 Query: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEL 419 IE+ +K IP + +P E + E QQ+ + + G + Sbjct: 360 IEKLLKKEIPRIAIPGYEPDPSIKAEPIQNGRQQRGGGGRGQGGGRGQQQPRRGEGGAKS 419 Query: 420 DLETLAAALLKMAQGERTLIVP 441 A + + Sbjct: 420 ASAKPAEKPSRRLGDAKPAGEQ 441 >UniRef50_C2ME86 ATP-dependent RNA helicase, dead/deah box family n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2ME86_9PORP Length = 553 Score = 588 bits (1516), Expect = e-166, Method: Composition-based stats. Identities = 190/560 (33%), Positives = 293/560 (52%), Gaps = 9/560 (1%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGR-DVLGMAQTGSGKTAAFSLPL 64 TF L L +L A DLG+ +P P+Q E IP+L R D++ +++TGSGKTAA+ LPL Sbjct: 1 MTFDTLDLSPELLRATTDLGFSEPMPVQQEVIPYLSTHRGDLIALSKTGSGKTAAYGLPL 60 Query: 65 LQNL-DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 L+ + + AP L+L PTRELA+QV + +K+ ++ALYGG + Q+R L Sbjct: 61 LERIIQAKGSAPCGLILTPTRELAIQVQSDLVALAKYTSVRQILALYGGASIEEQIRQLA 120 Query: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183 +G I+V TPGRL D ++R + L K+S +VLDEAD ML MGF D++ I+ +P+ + Sbjct: 121 KGYHIIVATPGRLCDLIRRKAVKLRKVSVVVLDEADVMLDMGFQRDLQEILQAVPQQVEH 180 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAE 243 LFSATM +R I ++ + EV+I + DI Y V K AL R ++ Sbjct: 181 WLFSATMSREVREIADNYISDAHEVQIGALNKANADIKHLYVAVPARHKYAALKRVVDYY 240 Query: 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 303 IIF RT+ T E+AE L R+GYN+ AL+GD++QA R+ + R + L +L+ATD Sbjct: 241 PNIYGIIFCRTRAETKEIAEWLIRDGYNADALHGDLSQAQRDMVMNRFRIRNLQLLVATD 300 Query: 304 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 363 VAARGLDV+ ++ V++Y +P D +SY HR GRT RAG+ G ++ R+ + +R IE+ Sbjct: 301 VAARGLDVDDVTHVLHYGLPADPDSYTHRSGRTARAGKTGLSIAICHLRDSKQIRIIEQH 360 Query: 364 MKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLET 423 + I + LP+ + + K++L A +++ + QY LL+ I L E Sbjct: 361 AGIRIESMPLPSGQEICKKQLFALATRIEYADSNEHGTQYDELLNAIVQKL--AWLPPEE 418 Query: 424 LAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDV 483 + +L + P ++ P+ R P R+ +R R D+ Sbjct: 419 IIRRVLTLEADRIMRYY----ANTPDLSAQELATEEPKYRTKGSPEEHRKAPKKRSRTDL 474 Query: 484 GDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQ 543 M RI +G+ D + ++ I N IG I L S+S E+ V Sbjct: 475 PPMTSLRINLGKRDKLYPNRLLELI-NRTLPYKITIGKIDLSPSYSYFEVASEWAETVAA 533 Query: 544 HFTRTRILNKPMNMQLLGDA 563 + +P+ + + D Sbjct: 534 ALSEEEYNGRPIRVTIQKDR 553 >UniRef50_Q0W8H7 ATP-dependent RNA helicase n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W8H7_UNCMA Length = 497 Score = 588 bits (1516), Expect = e-166, Method: Composition-based stats. Identities = 185/495 (37%), Positives = 289/495 (58%), Gaps = 3/495 (0%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 F +L L I+ A++++G+E+ +PIQ + IP + G+D++G A+TG+GKTAAF +P++ Sbjct: 2 VKFTELNLTPSIVRAVHEMGFEEATPIQEQAIPLAMEGKDLIGQARTGTGKTAAFGIPMV 61 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 + + P K Q LV+ PTRELAVQVAE +T K +RG+ VA+YGGQ + Q++AL + Sbjct: 62 EAIRPTSKGVQGLVVVPTRELAVQVAEELTRIGK-VRGIRSVAIYGGQDFRSQVKALEEL 120 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 P IVVGTPGRLL+H++R + S + VLDEAD+ML MGFI++ E I+ ++PE QT L Sbjct: 121 PHIVVGTPGRLLEHMRREYVRTSDIRIAVLDEADKMLDMGFIDEAEKILKKLPERRQTLL 180 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSAT+ ++ + R+++K+P+ + + T P Q Y + +K EAL R L+ E Sbjct: 181 FSATLSPPVQMLARKYLKDPELIEFEEEGITVPTTVQYYIEMPEKQKFEALTRLLDQEKP 240 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 + AI+FV T+ E+A+AL GY++ L+GD+ Q RE TL++ K G + IL+ATDVA Sbjct: 241 ELAIVFVATRIRVGELAKALVERGYHALGLHGDLLQYQRENTLDKFKAGEVSILVATDVA 300 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARGLD++ ++ V N+DIP D +SYVHRIGRTGRAG AG A FV +++ L IE+ + Sbjct: 301 ARGLDIQGVTHVYNFDIPRDPDSYVHRIGRTGRAGNAGTATTFVTPKDKTALEAIEQAID 360 Query: 366 LTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEL--DLET 423 I P ++ +E K++ ++E DL YR + + + + Sbjct: 361 HQITSKPAPGGAESTEKNIEAVIEKIRGEIEIRDLSFYRDYAESLLNSGDPATILAAALR 420 Query: 424 LAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDV 483 + + + Q T I P AP R + + P+ + G +++ R++ Sbjct: 421 ILSKAEEKPQIRLTEIPEPVAPDRKAEKGHGKGTGHPKKGSYSKGYGHKDEGDRKKAGAQ 480 Query: 484 GDMQLYRIEVGRDDG 498 + + G Sbjct: 481 KPKGSAFKQFAKKGG 495 >UniRef50_D2LXV0 DEAD/DEAH box helicase domain protein n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LXV0_BACS4 Length = 500 Score = 587 bits (1515), Expect = e-166, Method: Composition-based stats. Identities = 180/444 (40%), Positives = 270/444 (60%), Gaps = 6/444 (1%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F DL ++ I+EA+ +G+E+ +PIQ + IP G+D++G AQTG+GKT AF +P ++ Sbjct: 4 FKDLNIQPSIVEAIEKMGFEETTPIQEKVIPLGKEGQDIIGQAQTGTGKTVAFGIPCVEQ 63 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 + E K PQ LVL PTRELA+QVAE + + ++G+ + +YGGQ Q+ AL++ PQ Sbjct: 64 VVVEEKHPQALVLTPTRELAIQVAEELNKLGQ-VKGIKALPIYGGQEITRQITALKKRPQ 122 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 I+V TPGR +DH++R T+ L +VLDEADEML MGFIED+ETI+ ++P QT LFS Sbjct: 123 IIVATPGRYMDHMRRKTIRPEFLKIVVLDEADEMLSMGFIEDIETILQEVPGERQTLLFS 182 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 ATMP ++ I RFM +P + +++ T +I Q Y + K + L L+ E + Sbjct: 183 ATMPPKLKTIADRFMNKPVSIAVKAKQLTVENIEQRYIALSEKEKFDTLCNLLDMETPEL 242 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 AIIF RTK E+ E+L G+ L+GDM Q R+Q + + K G +D+++ATDVAAR Sbjct: 243 AIIFGRTKRRVDELTESLSIRGFAVEGLHGDMKQERRDQVIRKFKRGSIDVMVATDVAAR 302 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 GLDV +S V+N+D+P DSESYVHRIGRTGRAG+ G + FV ++E+ LR IE + + Sbjct: 303 GLDVNDVSHVINFDLPQDSESYVHRIGRTGRAGKKGISYSFVTHKEKDHLRYIEESTRQK 362 Query: 368 IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAA 427 + +V+ P + R ++ ++++ + ++ Q ++ EE D L +A Sbjct: 363 MKQVDAPTLADAMRGRHKQAVNELKKAVNNAASKQLTGEAKQLL-----EEFDPVVLVSA 417 Query: 428 LLKMAQGERTLIVPPDAPMRPKRE 451 L+M E + P R Sbjct: 418 ALQMVTKEPSKKQVKITGEAPVRS 441 >UniRef50_Q0AFH3 DEAD/DEAH box helicase domain protein n=1 Tax=Nitrosomonas eutropha C91 RepID=Q0AFH3_NITEC Length = 488 Score = 587 bits (1514), Expect = e-166, Method: Composition-based stats. Identities = 157/468 (33%), Positives = 249/468 (53%), Gaps = 14/468 (2%) Query: 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 + TF L L + IL A+ D GY P+PIQA+ IP +L G+DV+ AQTG+GKTA F+LPL Sbjct: 4 DVTFEQLDLSSEILRAVIDEGYINPTPIQAQVIPPILAGKDVMASAQTGTGKTAGFTLPL 63 Query: 65 LQNLD--------PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYD 116 L +L P + L++APTRELA+Q+ E++ + K++ + ++GG + Sbjct: 64 LHHLQAHASSSTSPARHPVRALIMAPTRELAMQIDESVRKYGKYLA-LRTTVVFGGVNIE 122 Query: 117 VQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQ 176 Q+ LR G +I+V TPGRLLD ++ ++ SK LVLDEAD ML MGF+ D++ +MA Sbjct: 123 PQITELRNGVEILVATPGRLLDLVEHKAVNFSKTEILVLDEADRMLDMGFLPDIKKVMAL 182 Query: 177 IPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEAL 236 +P Q+ +FSAT + IR++ +K P + + + T IS + K L Sbjct: 183 LPSQRQSLMFSATFSDEIRKLADGLLKHPVRIEVAAQNTINESISHVVHRIKPESKFALL 242 Query: 237 VRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRL 296 + ++ +D A++FV+TK+ ++A+ L + + A++GD NQ R Q L K G + Sbjct: 243 LHLVKQQDLKQALVFVKTKHGASQLAQMLSHHKILALAIHGDKNQQQRTQALSEFKHGDV 302 Query: 297 DILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRL 356 IL+ATDVAARG+D+E++S VVNY++P + E YVHRIGRTGRAG G+A+ V E L Sbjct: 303 QILVATDVAARGIDIEKLSHVVNYELPGNPEDYVHRIGRTGRAGSKGKAISLVSEHETEL 362 Query: 357 LRNIERTMKLTIPEVELPNAEL-----LGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQ 411 L +IE+ + + ++ + R + +A + ++ K Sbjct: 363 LTSIEKLLNTKLEIEQIAGFDAELFVRSLPDRKNRVSADIARRSNKQAEVANGEKTRKYS 422 Query: 412 PTAEGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRG 459 + + + + Q + P R ++ Sbjct: 423 GSRRSALQNHKDPIFTQPYIPQANPVQLATPKQSDAQSLLLAYRQEKK 470 >UniRef50_C6Q9Z2 DEAD/DEAH box helicase domain protein n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6Q9Z2_9RHIZ Length = 657 Score = 586 bits (1511), Expect = e-165, Method: Composition-based stats. Identities = 199/635 (31%), Positives = 280/635 (44%), Gaps = 28/635 (4%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 F G P+ AL GY P+PIQ + +P L GRD+LGMA+TGSGKTA F LPLLQ Sbjct: 27 NFEAFGFAEPLSRALTQCGYVTPTPIQVQALPPQLEGRDLLGMAETGSGKTATFVLPLLQ 86 Query: 67 NLDPE-----LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 + + K LVLAPTRELA+Q+ + + +++MR + + GG Q+ A Sbjct: 87 KIASQNSEPAPKQVLALVLAPTRELAIQIDQEVASLARNMR-IRRAVVLGGVSKGPQINA 145 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 L++G ++V TPGRLLD + T DLS++ LVLDEAD M MGFI D++ I+A +PE Sbjct: 146 LKRGVHVLVATPGRLLDLINMRTCDLSRVETLVLDEADRMFDMGFIRDIKKIVAMLPEAR 205 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 +TALFSATMP I++ +KEP V + S I Q V K L L Sbjct: 206 RTALFSATMPVEIKKFAYDILKEPYRVDLSSKSVVVDRIDQKVMIVRTTEKQSRLHTILA 265 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 E I+F RTK VAE L G +++A +G+ Q R++ L G + +L+A Sbjct: 266 DEACKRVIVFTRTKRGADRVAERLGMAGISASAFHGNKAQNARQRALNDFMMGHIRVLVA 325 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 TD+AARG+DV I+ VVN+D+P+D E+YVHR+GRT R G +G A+ + ER+ + IE Sbjct: 326 TDIAARGIDVSNITHVVNFDMPLDPETYVHRVGRTARKGNSGIAISLCDPGERQEITAIE 385 Query: 362 RTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDL 421 R MK + + E L + D + A + Sbjct: 386 RMMKQKLEVIADVGGEALPMPERRQHHRAETGPRRDGDRQHHHAGGRRDGREGGQRGERP 445 Query: 422 ETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDD-RGPRDRNDRGPRGDREDRPRRER 480 + A P P D D G +R + G R +R +R Sbjct: 446 ARPHRNGDERANASPARNGENRRPYEPLAIAADGDAVFGVGERRESRGDGHRPNRAPGDR 505 Query: 481 RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGE 540 G+ + + G + G A EG+ + R + P + Sbjct: 506 PHRGERRHHERNGGGEQRAN-----GHPAREGEPAKREQAHRDHGDR------PHRGERQ 554 Query: 541 VLQHFTRTRILN---KPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERREGG 597 +H + Q D QP + G R EGG + ERR Sbjct: 555 HHEHKAGGEARGSGHRSATGQRSRDGQPARHADSSRSQNAHSGHRHEGGH--ASERRNDE 612 Query: 598 RGDGRRFSGERREGRAPRRDDS-----TGRRRFGG 627 ER + R RR GG Sbjct: 613 HRQSPARQSERGDKRPAWSGTQAPKFMKPRRDDGG 647 >UniRef50_P24783 ATP-dependent RNA helicase DBP2 n=131 Tax=Eukaryota RepID=DBP2_YEAST Length = 546 Score = 585 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 138/383 (36%), Positives = 225/383 (58%), Gaps = 10/383 (2%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 + + TTF + G +L + G++KP+ IQ + P L+GRD++G+A TGSGKT ++ Sbjct: 108 IPKPITTFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSY 167 Query: 61 SLPLLQNLDPEL-----KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRY 115 LP + +++ + P +LVLAPTRELAVQ+ + F H + +YGG Sbjct: 168 CLPGIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQTECSKFG-HSSRIRNTCVYGGVPK 226 Query: 116 DVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMA 175 Q+R L +G +IV+ TPGRL+D L+ G +L +++ LVLDEAD ML MGF + I+ Sbjct: 227 SQQIRDLSRGSEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVD 286 Query: 176 QIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQS-SVTTRPDISQSYWTVWGMRKNE 234 QI QT ++SAT P+ ++++ ++ +P +V++ S ++ +I+Q V K + Sbjct: 287 QIRPDRQTLMWSATWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRD 346 Query: 235 ALVRFLE---AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERL 291 L ++LE ++ +IF TK ++ + L +G+ + A++GD +Q R+ L+ Sbjct: 347 RLNKYLETASQDNEYKTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEF 406 Query: 292 KDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVEN 351 ++GR I++ATDVAARG+DV+ I+ V+NYD+P + E YVHRIGRTGRAG G A+ F Sbjct: 407 RNGRSPIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTE 466 Query: 352 RERRLLRNIERTMKLTIPEVELP 374 + + L + M+ + Sbjct: 467 QNKGLGAKLISIMREANQNIPPE 489 >UniRef50_C4G990 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4G990_9FIRM Length = 538 Score = 585 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 164/476 (34%), Positives = 250/476 (52%), Gaps = 2/476 (0%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F++ GLK +L A+ GYE+P+P+Q E IP +L GRD++G AQTG+GKTAAF+LP+L Sbjct: 64 FSEFGLKKDLLSAIRKAGYEEPTPVQEESIPVILEGRDMIGCAQTGTGKTAAFALPVLHK 123 Query: 68 L-DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 L + + LVL PTRELA+Q+ + + +++ + V LYGG + Q+ ALR+G Sbjct: 124 LTLLKRPRVRALVLTPTRELAIQIFDNFKKYGRYLH-LRTVCLYGGAKRGPQIGALRRGA 182 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 I+V TPGRLLD + + +DLS + LVLDEAD ML MGF+ DV I+ P QT +F Sbjct: 183 DILVATPGRLLDFMGQDLVDLSSVEILVLDEADRMLDMGFLPDVSRIVESTPSKRQTLMF 242 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SATM + +R++ R +K+P +V++ + Q K E + L E + Sbjct: 243 SATMEKEVRQLADRMLKDPVQVQVTPENEAADTVEQKLIFSSREDKREIIASLLTDEAVE 302 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 +AI+F RTK+ +++ L+R G S A++GD Q R+ L R K G++ +++ATDVAA Sbjct: 303 SAIVFTRTKHGADKLSRELKRRGIESVAIHGDKTQGQRQDALNRFKSGKVRVMVATDVAA 362 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RGLD+ ++S V NYD+P ++ +Y+HRIGRTGRAG +G A+ E LR +E ++ Sbjct: 363 RGLDIPKLSHVFNYDVPEEAGAYIHRIGRTGRAGESGIAITLCCEAELDALREVEELLEK 422 Query: 367 TIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAA 426 IPE++ + L ++ + + + + T Sbjct: 423 PIPELQTQWSLPLERKARKGKGGRTRHGRSGYRSGGQKNAGKSGHKTGSRNRQGHADRRQ 482 Query: 427 ALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRD 482 + R P R +R RG G + R Sbjct: 483 KAGGASGSGRGRRRRDQGPRPMPNINNGRSERENISDESRGRGGYSGSYYGQGRGR 538 >UniRef50_C6WW85 DEAD/DEAH box helicase domain protein n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WW85_METML Length = 576 Score = 585 bits (1508), Expect = e-165, Method: Composition-based stats. Identities = 199/624 (31%), Positives = 285/624 (45%), Gaps = 56/624 (8%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 +F L L IL A+ + GY P+PIQA+ IP ++ G D++ AQTG+GKTA F LP L Sbjct: 1 MSFESLNLNPAILRAIEETGYTTPTPIQAQAIPVVMEGHDLMASAQTGTGKTAGFMLPAL 60 Query: 66 QNL----DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 L + + P+ILVL PTRELA QV EA + K +R V++ GG Y +Q + Sbjct: 61 NLLATPHESRSRGPRILVLTPTRELAAQVNEAARKYGKFLRA-RTVSIVGGMPYPLQNKL 119 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 L Q I+V TPGRLLDH++RG +DLS+L L+LDEAD ML MGF+ DVE I Q+ Sbjct: 120 LSQPLDILVATPGRLLDHMERGRIDLSRLQMLILDEADRMLDMGFLPDVERICEQLSAER 179 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM-RKNEALVRFL 240 QT LFSAT+ I RI ++ +K P+ V++ + +I Q V M KN+ L L Sbjct: 180 QTLLFSATLDGDIARIAQQILKNPKTVQVAAQKEKHANIEQRLHFVDDMTHKNKLLEHLL 239 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 A + + IIF TK +AE L G+ +AAL+GDM Q R +TL +L+ G + +L+ Sbjct: 240 IAPEVNQTIIFTSTKRHADVLAEDLYAAGHKTAALHGDMTQGARNRTLTKLRHGDVKVLV 299 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATDVAARG+DV I+ V+NYD+P +E YVHRIGRTGRA G A+ F N +R LLR I Sbjct: 300 ATDVAARGIDVHGITHVINYDLPKFAEDYVHRIGRTGRANNTGIAISFASNMDRHLLRKI 359 Query: 361 ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEL- 419 E+ + + E +++ + + ++ +++ + Sbjct: 360 EQYTGNRLEASVIEGFEPKRPVKMDGPSGGRRDGHKAGGRGGFKSRDDRGGFGGRDGNRG 419 Query: 420 -DLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRR 478 + + ER R R+ R+ G +R +RP Sbjct: 420 DNRGGSRHESRGDNRSERPSFNRDSNESRGNRDSAPREVNGNSAGYAGRSDANRSERPAG 479 Query: 479 ER-RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM 537 +R R GD + G N +R G+ Sbjct: 480 DRARSFGDRVAFDKSSGDRSRG----------NNAGAPNRSFGD---------------- 513 Query: 538 PGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERREGG 597 + +P+ +R GR G + R Sbjct: 514 --------------------SVAFGKKPYARDGQRSEGRNDRGAAPARRDGARNDSRSPA 553 Query: 598 RGDGRRFSGERREGRAPRRDDSTG 621 R + G APRR S Sbjct: 554 RSGFGGANAGAGNG-APRRSRSFA 576 >UniRef50_Q92841 Probable ATP-dependent RNA helicase DDX17 n=25 Tax=Bilateria RepID=DDX17_HUMAN Length = 650 Score = 584 bits (1507), Expect = e-165, Method: Composition-based stats. Identities = 139/457 (30%), Positives = 226/457 (49%), Gaps = 15/457 (3%) Query: 2 AEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFS 61 + F +++ L D + +P+PIQ + P L+GRD++G+AQTGSGKT A+ Sbjct: 88 PKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYL 147 Query: 62 LPLLQNLDPEL-----KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYD 116 LP + +++ + P LVLAPTRELA QV + D+ K + +YGG Sbjct: 148 LPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGK-CSRLKSTCIYGGAPKG 206 Query: 117 VQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQ 176 Q+R L +G +I + TPGRL+D L+ G +L + + LVLDEAD ML MGF + I+ Q Sbjct: 207 PQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQ 266 Query: 177 IPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQS-SVTTRPDISQSYWTVWGMRKNEA 235 I QT ++SAT P+ +R++ F+++ ++ + + ++ +I Q K+ Sbjct: 267 IRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHK 326 Query: 236 LVRFLEA---EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLK 292 L++ +E E + IIFV TK ++ + R+G+ + ++GD +Q R+ L + Sbjct: 327 LIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFR 386 Query: 293 DGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENR 352 G+ ILIATDVA+RGLDVE + V+NYD P SE YVHRIGRT R+ G A F Sbjct: 387 SGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPG 446 Query: 353 ERRLLRNIERTMKLTIPEVELPNAELLGKR-----RLEKFAAKVQQQLESSDLDQYRALL 407 + R + + ++ + +L+ R + + + +L Sbjct: 447 NLKQARELIKVLEEANQAINPKLMQLVDHRGGGGGGGGRSRYRTTSSANNPNLMYQDECD 506 Query: 408 SKIQPTAEGEELDLETLAAALLKMAQGERTLIVPPDA 444 +++ +G D + G Sbjct: 507 RRLRGVKDGGRRDSASYRDRSETDRAGYANGSGYGSP 543 >UniRef50_Q126W4 DEAD/DEAH box helicase-like n=153 Tax=Bacteria RepID=Q126W4_POLSJ Length = 579 Score = 583 bits (1505), Expect = e-165, Method: Composition-based stats. Identities = 179/491 (36%), Positives = 262/491 (53%), Gaps = 9/491 (1%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 TF +L L IL+A+ + GY+ P+PIQA+ IP +L G D+LG AQTG+GKTAAF+LP+L Sbjct: 1 MTFEELKLAPAILKAVLEQGYDTPTPIQAQAIPAVLAGSDLLGGAQTGTGKTAAFTLPML 60 Query: 66 QNLDPELK--------APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDV 117 Q L E + A + L++ PTRELA QV E++ + K++ + + ++GG Sbjct: 61 QRLSTEPRLTNRRGVNAVRALIMTPTRELAAQVEESVRTYGKYL-DLTSMVMFGGVGMGA 119 Query: 118 QLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQI 177 Q+ LR+G I+V TPGRLLDH +GTLDLS++ LVLDEAD ML MGFI D++ ++A + Sbjct: 120 QIDKLRRGVDILVATPGRLLDHAGQGTLDLSQVQILVLDEADRMLDMGFIHDIKKVLALV 179 Query: 178 PEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALV 237 P+ Q+ LFSAT + IR + +++P +++ TT I+Q+ V +K L Sbjct: 180 PKHKQSLLFSATFSDEIRELANGLLRDPLHIQVTPRNTTVQRITQTIHPVGRSKKKALLT 239 Query: 238 RFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLD 297 + ++ ++F RTK VAE L +NG + AL+G+ +Q R Q L+ KDG + Sbjct: 240 HIINEHNWSQVLVFTRTKFGANNVAEHLTKNGIEAMALHGNKSQTARTQALQGFKDGTIR 299 Query: 298 ILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLL 357 L+ATD+AARG+D++ + VVNY+IP SE YVHRIGRTGRAG +G A+ V E + Sbjct: 300 ALVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGNSGEAVSLVCLDEEGFM 359 Query: 358 RNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGE 417 ++IER K I +V +P E R E A Q R ++ A E Sbjct: 360 QDIERFTKQNIEKVLVPGFEAEPGERAEPLAMGRQTIWGGLGKPPSRDVMQAAAKAARSE 419 Query: 418 ELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPR 477 + + G + + RGPR +PR Sbjct: 420 MMQRIRDTKGAQPARGASGGGNGGNGGNGGGRGRGPAGGGNGSGNGSGRGPRTPNPGQPR 479 Query: 478 RERRDVGDMQL 488 + Q Sbjct: 480 QNSGYSQGGQP 490 >UniRef50_Q8YXJ0 ATP-dependent RNA helicase n=24 Tax=Cyanobacteria RepID=Q8YXJ0_ANASP Length = 513 Score = 583 bits (1504), Expect = e-165, Method: Composition-based stats. Identities = 192/494 (38%), Positives = 290/494 (58%), Gaps = 6/494 (1%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 +F +LG+ +E L LG+ P+ IQA+ IP LL+GRDV+G +QTG+GKTAAFSLP Sbjct: 1 MNLSFPELGISQERVEHLEKLGFTAPTNIQAQAIPQLLSGRDVVGQSQTGTGKTAAFSLP 60 Query: 64 LLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 +L+ LDP+ KA Q +VL PTRELA+QV +AM F G+ +A+YGGQ D Q+ L+ Sbjct: 61 ILERLDPQQKAVQAIVLTPTRELAIQVHDAMAQF-VGNSGLRTLAIYGGQSIDRQMLQLK 119 Query: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183 +G IVVGTPGR++D L+RG L L ++ VLDEADEML MGFI+DVE I++Q P+ QT Sbjct: 120 RGVHIVVGTPGRVIDLLERGNLKLDQVKWFVLDEADEMLSMGFIDDVEKILSQAPQDRQT 179 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM-RKNEALVRFLEA 242 ALFSATMP +IR + +F++ P V ++ T I+Q + + K AL LE Sbjct: 180 ALFSATMPPSIRMLVNKFLRSPVTVTVEQPKATPNKINQVAYLIPRHWTKARALQPILEM 239 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 ED + A+IFVRT+ E+ L+ G++ +GD++Q RE+ L R + ++ ++AT Sbjct: 240 EDPETALIFVRTRRTAAELTSQLQAAGHSVDEYHGDLSQQARERLLTRFRSRQVRWVVAT 299 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 D+AARGLDV+++S V+NYD+P E+YVHRIGRTGRAG+ G A+ V+ ERR + ER Sbjct: 300 DIAARGLDVDQLSHVINYDLPDSVETYVHRIGRTGRAGKEGTAITLVQPFERRKQQIFER 359 Query: 363 TMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLE 422 ++ + +P + R + K +V++ L L + ++S++ + + + Sbjct: 360 HVRQNWQLLSIPTRAQIEARHILKLQEQVREALAGERLASFLPIVSELIEKYDAQAIAAA 419 Query: 423 TLAAALLKMAQGERT--LIVPPDAPMRPKRE--FRDRDDRGPRDRNDRGPRGDREDRPRR 478 L A + + +P + PK + + R+ G R R++ + R Sbjct: 420 ALQIAYDQTRPAWLSTDAEIPEEVASTPKPKLGGKRREFSGDRGRSNWNKSDNNNSDDER 479 Query: 479 ERRDVGDMQLYRIE 492 ++ R E Sbjct: 480 RGTPKPKLRTGRRE 493 >UniRef50_P17844 Probable ATP-dependent RNA helicase DDX5 n=52 Tax=Fungi/Metazoa group RepID=DDX5_HUMAN Length = 614 Score = 583 bits (1504), Expect = e-165, Method: Composition-based stats. Identities = 142/496 (28%), Positives = 235/496 (47%), Gaps = 12/496 (2%) Query: 2 AEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFS 61 + F + A +++ + + +P+ IQA+ P L+G D++G+AQTGSGKT ++ Sbjct: 90 PKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYL 149 Query: 62 LPLLQNLDPEL-----KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYD 116 LP + +++ + P LVLAPTRELA QV + ++ + R + +YGG Sbjct: 150 LPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACR-LKSTCIYGGAPKG 208 Query: 117 VQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQ 176 Q+R L +G +I + TPGRL+D L+ G +L + + LVLDEAD ML MGF + I+ Q Sbjct: 209 PQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQ 268 Query: 177 IPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQS-SVTTRPDISQSYWTVWGMRKNEA 235 I QT ++SAT P+ +R++ F+K+ + I + ++ +I Q + K+E Sbjct: 269 IRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEK 328 Query: 236 LVRFLEA---EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLK 292 L+R +E E + I+FV TK E+ + R+G+ + ++GD +Q R+ L K Sbjct: 329 LIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFK 388 Query: 293 DGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENR 352 G+ ILIATDVA+RGLDVE + V+NYD P SE Y+HRIGRT R+ + G A F Sbjct: 389 HGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPN 448 Query: 353 ERRLLRNIERTMKLTIPEVELPNAELLGK--RRLEKFAAKVQQQLESSDLDQYRALLSKI 410 + + ++ ++ + +L+ + ++ R + Sbjct: 449 NIKQVSDLISVLREANQAINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNTF 508 Query: 411 QPTAEGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRG 470 + + L Q R N G Sbjct: 509 RDRENYDRGYSSLLKRDFGAKTQNGVYSAANYTNGSFGSNFVSAGIQTSFRTGNPTGTYQ 568 Query: 471 DREDRPRRERRDVGDM 486 + D ++ +V +M Sbjct: 569 NGYDSTQQYGSNVPNM 584 >UniRef50_A8TFK3 DEAD/DEAH box helicase domain protein n=1 Tax=Methanococcus voltae A3 RepID=A8TFK3_METVO Length = 584 Score = 582 bits (1502), Expect = e-164, Method: Composition-based stats. Identities = 189/589 (32%), Positives = 301/589 (51%), Gaps = 41/589 (6%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGR-DVLGMAQTGSGKTAAFSLPLLQ 66 F DL + I+E L++ G+ + + IQ + IP +L+ DV+G AQTG+GKT AF +P++Q Sbjct: 3 FRDLNISESIMERLDEKGFTEATQIQEKAIPIVLDTELDVVGQAQTGTGKTLAFGIPIIQ 62 Query: 67 NLDPE--------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQ 118 + + KA + ++L PTRELA+QV + + +K + + + +YGGQ + Q Sbjct: 63 KIQEKIEENGRKNKKAVKAIILTPTRELALQVHDEIDSVNKGNK-LRLCTVYGGQSIEKQ 121 Query: 119 LRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP 178 + LR G IV+GTPGR++DHL R TL L+++ LVLDEADEML +GFI+DVE IM++ Sbjct: 122 INKLRNGVDIVIGTPGRVIDHLGRRTLKLNEIDFLVLDEADEMLNLGFIDDVEEIMSKCK 181 Query: 179 EGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVR 238 E + LFSAT+P++I + M E + +R++S T Q Y+ V K E L R Sbjct: 182 EDCRKLLFSATLPKSIMELVELHMGEYETIRVKSKALTTELTEQIYYEVKEHDKFELLRR 241 Query: 239 FLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDI 298 ++ E ++F +TK ++ L Y+S AL+GDMNQ RE L R K ++DI Sbjct: 242 IIDKEPGFYGLVFCKTKADVDQLMRRLNDENYSSEALHGDMNQKQRELALSRFKSHKIDI 301 Query: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLR 358 +IATDVAARG+D+ ++ V+NYDIP + E+YVHRIGRTGRAG G A+ FVE RE R + Sbjct: 302 MIATDVAARGIDINELTHVINYDIPQNPEAYVHRIGRTGRAGNKGTAITFVEPREFRRFK 361 Query: 359 NIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEE 418 I + K + ++P+ + + K++Q +++ + + L E E Sbjct: 362 YIMKISKSDAKKEKIPDVTEIVELTKTNIIGKLKQLIQTENSEDSEDL-----ENYEFEN 416 Query: 419 LDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDR------------ 466 L++ L LI ++ + D G R ND Sbjct: 417 LEIVDELIELADSKVIIDKLISQLFKEELNRKSYGRIGDYGSRKGNDGRDSRRDGRNDRD 476 Query: 467 -------------GPRGDREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGD 513 + DR RR+ + +G D ++ R ++ + + D Sbjct: 477 RRDGRRNDRDRNDRNDRNDRDRRDNRRRNNDGGSRLFVALGSMDNMDTRRLLRKVLEKSD 536 Query: 514 ISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGD 562 +S I + ++ + S I + +++ F R KP+ ++ Sbjct: 537 VSKDNISEVNVYRNFSFISADEKTAKQIVDSFRSERRNGKPL-IEYAKR 584 >UniRef50_C5CU85 DEAD/DEAH box helicase domain protein n=10 Tax=Comamonadaceae RepID=C5CU85_VARPS Length = 601 Score = 582 bits (1502), Expect = e-164, Method: Composition-based stats. Identities = 168/420 (40%), Positives = 240/420 (57%), Gaps = 9/420 (2%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 F +L L IL+A+++ GY+ P+PIQA+ IP +L G D+LG AQTG+GKTAAF+LP+L Sbjct: 1 MNFDELKLAPAILKAVHEHGYDTPTPIQAQAIPAVLEGHDLLGGAQTGTGKTAAFTLPML 60 Query: 66 QNLDPELK--------APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDV 117 L + LVL PTRELA QV E++ + K++ ++ ++GG + Sbjct: 61 HKLSTGASATNKFGGIGIRALVLTPTRELAAQVEESVRTYGKYLE-LDSTVIFGGVGMNP 119 Query: 118 QLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQI 177 Q+ L++G I+V TPGRLLD ++G LDLS++ L+LDEAD ML MGFI DV+ I+A + Sbjct: 120 QISKLKKGVDILVATPGRLLDLQQQGMLDLSQVQMLILDEADRMLDMGFIHDVKKILALV 179 Query: 178 PEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALV 237 P+ Q+ LFSAT + IR + +K PQ +++ TT I+Q V +K L Sbjct: 180 PKEKQSLLFSATFSDEIRDLAATLLKNPQSIQVTPRNTTVQRITQVIHPVGRGKKKALLA 239 Query: 238 RFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLD 297 + + ++F RTK VAE L +NG + AL+G+ +Q+ R Q L K G + Sbjct: 240 HIINENKWSQVLVFTRTKFGANSVAEFLTKNGIEAMALHGNKSQSARTQALAGFKSGDIR 299 Query: 298 ILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLL 357 L+ATD+AARG+D++ + VVNY+IP SE YVHRIGRTGRAG +G A+ FV E + Sbjct: 300 ALVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGSSGEAVSFVCMDEEGFM 359 Query: 358 RNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGE 417 + IER K TIP + R E A Q + R ++ A E Sbjct: 360 QEIERFTKQTIPVQFVEGFGPEEGERAEPIAMGRQTIWGGAGRPPSRDVMQAAAKAARTE 419 >UniRef50_Q2SZW4 ATP-dependent RNA helicase RhlE n=104 Tax=Proteobacteria RepID=Q2SZW4_BURTA Length = 571 Score = 582 bits (1500), Expect = e-164, Method: Composition-based stats. Identities = 159/456 (34%), Positives = 250/456 (54%), Gaps = 9/456 (1%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 + TF GL A IL A+ + GY P+PIQA IP +L+GRDV+G AQTG+GKTA+FSLP Sbjct: 99 VDATFDQFGLAAEILRAIAEQGYTTPTPIQANAIPVVLSGRDVMGAAQTGTGKTASFSLP 158 Query: 64 LLQNLDPELKA--------PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRY 115 ++Q L P+ + L+L PTRELA QVA + ++KH + ++GG Sbjct: 159 IIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP-LRSAVVFGGVDM 217 Query: 116 DVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMA 175 + Q+ LR+G +I++ TPGRLLDH+++ T +L ++ LVLDEAD ML MGF+ D++ I+ Sbjct: 218 NPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILN 277 Query: 176 QIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA 235 +P+ QT LFSAT I+++ +++ PQ + + S ++Q + V K A Sbjct: 278 LLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAA 337 Query: 236 LVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGR 295 +V+ + I+F +K +A +ER+G +AA++GD +Q+ R Q L+ K G Sbjct: 338 VVKLIRDRSLKQVIVFCNSKIGASRLARQIERDGIVAAAIHGDRSQSERMQALDAFKRGE 397 Query: 296 LDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERR 355 ++ L+ATDVAARGLD+ + V+N+D+P ++E YVHRIGRTGRAG +G AL ER+ Sbjct: 398 IEALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERK 457 Query: 356 LLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAE 415 L +IE+ +K T+ L + + ++ R+ + Sbjct: 458 QLADIEKLIKRTLSLETLELDLPRHRHDERGGRRERERDERRGASAGRRSAGGERAHHPR 517 Query: 416 GEELDLETLAAALLKMAQGERTLIVPPDAPMRPKRE 451 E + + + + P P + + Sbjct: 518 REAPIDDFFLKPYVPSSSANQPEEAKPAQPEKKAPK 553 >UniRef50_A9NFK0 ATP-dependent RNA helicase, superfamily II n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NFK0_ACHLI Length = 448 Score = 580 bits (1497), Expect = e-164, Method: Composition-based stats. Identities = 148/406 (36%), Positives = 237/406 (58%), Gaps = 6/406 (1%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 F++L + I +AL GYE P+ IQ + IP LL+G+D+LG AQTG+GKTAAF++P+L Sbjct: 1 MKFSELNIIERIQKALTLSGYEAPTAIQEQAIPILLSGQDLLGSAQTGTGKTAAFAIPIL 60 Query: 66 QNL-----DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 Q + + Q L+L PTRELA+Q+ E + ++K++ + +YGG Q Sbjct: 61 QKIYETKEHKAPRKVQALILTPTRELALQIHENVKIYAKYL-NIISTTIYGGVSQKRQEE 119 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 AL++G +V+ TPGRLLD + + + L + LVLDEAD+ML MGFI+DV +I+ + P+ Sbjct: 120 ALKRGVDVVIATPGRLLDLMNQKIISLQDVRYLVLDEADQMLDMGFIKDVTSIVDKTPKK 179 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 QT LFSATMP+ I ++++ + P+ + + T I+QS + V K L+ + Sbjct: 180 RQTMLFSATMPKQIEVLSKQILVNPERIAVTPVTQTLDAITQSVYMVNKANKTLLLIDLI 239 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 + + ++F +TK+ ++ + L G S ++G +QA RE+ L K G+ IL+ Sbjct: 240 YTLNMKSVLVFTKTKHGANKLVKNLMNLGIESEPIHGSKSQAARERALANFKKGKTKILV 299 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATD+AARG+D+E + V+N+++P E+Y+HRIGRTGRAG +G AL V+ E++LL + Sbjct: 300 ATDIAARGIDIEALDYVINFELPEVPETYIHRIGRTGRAGLSGMALSLVDPSEQKLLTQV 359 Query: 361 ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRAL 406 E+ + I V ++ E K++ + L Sbjct: 360 EKHINSKIEAVGHKYQIQSQPKQREVITDKLKTDTSKKQEKPKKEL 405 >UniRef50_Q54CE0 Probable ATP-dependent RNA helicase ddx17 n=2 Tax=Eukaryota RepID=DDX17_DICDI Length = 785 Score = 580 bits (1497), Expect = e-164, Method: Composition-based stats. Identities = 131/381 (34%), Positives = 212/381 (55%), Gaps = 8/381 (2%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 + F +++ + G+ P+PIQ++ P L GRD++G+A+TGSGKT AF Sbjct: 379 VPPPIMQFTQAPFPGYLMKEIIGAGFPNPTPIQSQAWPIALKGRDIIGLAKTGSGKTLAF 438 Query: 61 SLPLLQNLDPEL-----KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRY 115 LP + +++ + P +LVLAPTRELA+Q+ E F ++ +YGG Sbjct: 439 LLPSIVHINAQPVLREDDGPIVLVLAPTRELALQIQEETNKFG-GTSQISNTCVYGGASK 497 Query: 116 DVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMA 175 Q+ AL++G +IV+ TPGRL+D L+ G +L +++ LVLDEAD ML MGF + I++ Sbjct: 498 HTQVAALKKGVEIVIATPGRLIDILESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIS 557 Query: 176 QIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTT-RPDISQSYWTVWGMRKNE 234 QI QT +FSAT P+ ++ + F+ + +V I S+ T ++ Q K E Sbjct: 558 QIRPDRQTLMFSATWPKEVQALAHDFLTDHIQVHIGSTEITANHNVRQIVEVCQDFEKKE 617 Query: 235 ALVRFL-EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKD 293 ++ FL + I+F T+ ++ L+ +G+ S ++G+ +Q R+ L + K+ Sbjct: 618 RMLSFLGSVGRDEKVIVFAETRKGVDDLQRVLQFSGFKSIGIHGNKSQPERDFVLSQFKN 677 Query: 294 GRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRE 353 G + I+IATDVA+RGLD++ I VVNYD P E Y+HRIGRT RAG +G + + Sbjct: 678 GMVPIMIATDVASRGLDIKDIKYVVNYDFPNTIEVYIHRIGRTARAGASGVSYSLLTTDN 737 Query: 354 RRLLRNIERTMKLTIPEVELP 374 RL + + + ++ + Sbjct: 738 ARLANELIKVLTEAKQKIPIE 758 >UniRef50_Q7NHM7 Gll2508 protein n=1 Tax=Gloeobacter violaceus RepID=Q7NHM7_GLOVI Length = 437 Score = 580 bits (1497), Expect = e-164, Method: Composition-based stats. Identities = 209/435 (48%), Positives = 290/435 (66%), Gaps = 2/435 (0%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 T F+ LGL +++AL++LG+E+P+PIQ + IP LL+GRD+L AQTG+GKTAAF LP Sbjct: 1 MATAFSALGLSESVVKALDELGFEQPTPIQLKSIPFLLDGRDLLAQAQTGTGKTAAFGLP 60 Query: 64 LLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 L+ DP+ Q LVLAPTRELAVQV EA+ +SKH GV V+ +YGGQ D Q+R LR Sbjct: 61 LVDRSDPQDARVQALVLAPTRELAVQVCEAIHTYSKH-SGVRVLPIYGGQPIDRQMRRLR 119 Query: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183 G QIVVGTPGR+LD ++RG+LDLS L LVLDEAD+ML MGFIE+V+TI+ P Q Sbjct: 120 AGAQIVVGTPGRVLDLMRRGSLDLSALRTLVLDEADQMLDMGFIEEVQTILDAAPPERQL 179 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAE 243 FSAT+P +IR++ R ++ P + + + P I+Q + V + +AL R L AE Sbjct: 180 VFFSATLPASIRKLAARHLRTPMTLTMPAEERDTPAIAQRVYFVNFKNRAQALTRVLAAE 239 Query: 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 303 D +A+IF RTK A E+AE L+ +G+ + AL+GD+NQ+ RE L R + +L++++ATD Sbjct: 240 DPASALIFTRTKQAADELAEQLQDDGHRAEALHGDLNQSAREAVLGRFRRQQLNVVVATD 299 Query: 304 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 363 VAARGLD+ +S V+NYD+P D ESY+HRIGRTGRAGR G A+ F +R LR IER Sbjct: 300 VAARGLDIADLSHVINYDMPQDGESYIHRIGRTGRAGRTGVAISFALPTDRYRLRLIERA 359 Query: 364 MKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLET 423 T+ ++P+A + RR E+ ++++QL++ + D L ++ EE DL Sbjct: 360 TGSTLVPAKIPSAGEIQVRRTERLVEQLRRQLQADESDPSLVLYREVVGQLR-EEFDLGD 418 Query: 424 LAAALLKMAQGERTL 438 +AA LK+AQ Sbjct: 419 IAATFLKLAQQRPGS 433 >UniRef50_Q1ECV0 LOC556764 protein (Fragment) n=21 Tax=Eukaryota RepID=Q1ECV0_DANRE Length = 519 Score = 580 bits (1496), Expect = e-164, Method: Composition-based stats. Identities = 139/388 (35%), Positives = 215/388 (55%), Gaps = 10/388 (2%) Query: 2 AEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFS 61 + T F +++ L +++P+ IQA+ P L+GRD++G+AQTGSGKT A+ Sbjct: 91 PKPVTNFHQAQFPQYVMDVLLQQNFKEPTAIQAQGFPLALSGRDMVGIAQTGSGKTLAYL 150 Query: 62 LPLLQNLDPEL-----KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYD 116 LP + +++ + P LVLAPTRELA QV + D+ K R + +YGG Sbjct: 151 LPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVAFDYGKSSR-IKSTCVYGGAPKG 209 Query: 117 VQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQ 176 Q+R L +G +I + TPGRL+D L+ G +L + + LVLDEAD ML MGF + I+ Q Sbjct: 210 PQIRDLERGVEICIATPGRLIDFLEVGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQ 269 Query: 177 IPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQS-SVTTRPDISQSYWTVWGMRKNEA 235 I QT ++SAT P+ +R++ F+++ ++ I + ++ +I Q K+ Sbjct: 270 IRPDRQTLMWSATWPKEVRQLAEDFLQDYVQINIGALELSANHNILQIVDVCMENEKDNK 329 Query: 236 LVRFLEA---EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLK 292 L++ +E E + IIFV TK E+ + R+G+ + ++GD +Q R+ L + Sbjct: 330 LIQLMEEIMAEKENKTIIFVETKKRCDELTRRMRRDGWPAMCIHGDKSQPERDWVLTEFR 389 Query: 293 DGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENR 352 G+ ILIATDVA+RGLDVE + V+NYD P SE YVHRIGRT R+ G A F Sbjct: 390 SGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPG 449 Query: 353 ERRLLRNIERTMKLTIPEVELPNAELLG 380 R R++ R ++ + +L+ Sbjct: 450 NLRQARDLVRVLEEARQAINPKLLQLVD 477 >UniRef50_A9KIB7 DEAD/DEAH box helicase domain protein n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KIB7_CLOPH Length = 514 Score = 578 bits (1491), Expect = e-163, Method: Composition-based stats. Identities = 148/417 (35%), Positives = 237/417 (56%), Gaps = 2/417 (0%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 F ++ L P+L+A+ + G+ +PSPIQ + IP +L GRD+LG AQTG+GKTAAF+LP+L Sbjct: 1 MNFNEMNLIKPLLQAIKEEGFIEPSPIQKKTIPLVLEGRDILGCAQTGTGKTAAFALPIL 60 Query: 66 QNLDP-ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 Q+L E + L++ PTRELA+Q+ E+ F K+ + +YGG +Q+ +L+ Sbjct: 61 QSLSKGEGSGVRALIITPTRELAIQIYESFECFGKYTS-LKQSVIYGGVGQSLQVNSLKA 119 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 G I++ TPGRL D + +G + L + VLDEAD+ML MGF+ D++ ++ +P+ QT Sbjct: 120 GIDILIATPGRLNDLIGQGYITLDAIEMFVLDEADQMLDMGFLNDIKKVIKLLPKTRQTL 179 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 LFSATMP+ I + + P+ ++I +T I QS + V + K L ++ Sbjct: 180 LFSATMPKEIESLATNLLNNPEIIKISPVTSTVDSIEQSVYFVDRLNKISLLTSLIKEHK 239 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 ++F +TK+ VA+ L + + A++G Q R+ L K+G++ +L+ATD+ Sbjct: 240 MSRVLVFTKTKHGADRVADKLNKAKVKTQAIHGGKGQNARQTALSDFKEGKIKVLVATDI 299 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 AARG+D+ +S VVNYDIP +E Y+HRIGRTGRAG G A+ + LR IE+ + Sbjct: 300 AARGIDISELSYVVNYDIPNQAEIYIHRIGRTGRAGLGGNAINLCNIDDMDYLREIEKHI 359 Query: 365 KLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDL 421 + IPEV L+ ++ + + + + + KI ++ Sbjct: 360 GMVIPEVPSKWPMLILEKTEKPVRGQRPENTTKNVGKESVKTEEKILLNEGAKKTKA 416 >UniRef50_UPI0001C33831 DNA/RNA helicase, superfamily II n=3 Tax=Cyanobacteria RepID=UPI0001C33831 Length = 477 Score = 577 bits (1489), Expect = e-163, Method: Composition-based stats. Identities = 188/471 (39%), Positives = 290/471 (61%), Gaps = 6/471 (1%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 +F +LGL + L +LG+E P+ IQ + IP +L G DVLG +QTG+GKTAA+SLP Sbjct: 1 MTISFENLGLSETRVNKLKELGFENPTEIQEKAIPLMLEGHDVLGQSQTGTGKTAAYSLP 60 Query: 64 LLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 +L+ +D + + Q+L+L PTRELA QVAEA+ DF+ R + ++ +YGGQ D Q+R+L Sbjct: 61 ILEKVDIQDPSVQVLILTPTRELAQQVAEALKDFTVR-RRLYILTVYGGQSIDRQIRSLE 119 Query: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183 +G QIVVGTPGR++D ++R L L L VLDEADEML MGFI+DV+TI+ + PE T Sbjct: 120 RGVQIVVGTPGRVIDLIERKKLILDSLRWAVLDEADEMLSMGFIDDVKTILKKTPESRST 179 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM-RKNEALVRFLEA 242 A FSATMP IR + +F+K P + ++ + I Q+ + V K +AL LE Sbjct: 180 ACFSATMPREIRELVNQFLKSPVTISVERTQAAPTRIEQNIYMVPRGWSKRKALQPVLEI 239 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 ED ++AIIFVRTK ++ L+ G+ +G+++Q+ RE+ + R +DGR+ +++AT Sbjct: 240 EDPESAIIFVRTKQTASDLTTRLQEIGHCVDEYHGNLSQSQRERLVHRFRDGRIKLVVAT 299 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 D+AARGLDVE +S V+NYD+P +SE+Y+HRIGRTGRAG+ G+A+ VE+ +RR++R IER Sbjct: 300 DIAARGLDVEGLSHVINYDLPDNSETYIHRIGRTGRAGKTGKAISIVESADRRMIRQIER 359 Query: 363 TMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLE 422 ++ I ++PN + +RL K +++ L + + L+S++ + + + Sbjct: 360 KLRQKIDICKIPNRSEVEAKRLGKLQNLIKESLIGERMASFLPLVSELSTEYDSQAIAA- 418 Query: 423 TLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDRE 473 AAL + + + D + + R N + + +R Sbjct: 419 ---AALQMIYDQDCPDWMKTDWEVPEAATPKPVIGRKSNKYNSKNSKHNRN 466 >UniRef50_P42305 ATP-dependent RNA helicase dbpA n=99 Tax=Firmicutes RepID=DBPA_BACSU Length = 479 Score = 577 bits (1489), Expect = e-163, Method: Composition-based stats. Identities = 164/426 (38%), Positives = 251/426 (58%), Gaps = 3/426 (0%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F + + IL AL LGY +P+ +Q IP L +D++ +QTGSGKTA+F +PL + Sbjct: 4 FKNYQISHDILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPLCEL 63 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 + + PQ L+L PTRELAVQV E +T+ + R + A++G +D Q L+Q Sbjct: 64 ANWDENKPQALILTPTRELAVQVKEDITNIGRFKR-IKATAVFGKSSFDKQKAELKQKSH 122 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 IVVGTPGR+LDH+++GTL L +LS LV+DEADEML MGFIE VE I+ +P T LFS Sbjct: 123 IVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPTERTTMLFS 182 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 AT+P+ I +++R++M+ P+ + ++++ T +I + V K L L E+ D+ Sbjct: 183 ATLPQDIEKLSRQYMQNPEHIEVKAAGLTTRNIEHAVIQVREENKFSLLKDVLMTENPDS 242 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 IIF RTK ++ + L+ GY ++G M Q R + K G L+ATDVAAR Sbjct: 243 CIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAAR 302 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 G+D+E ISLV+NYD+P++ ESYVHR GRTGRAG G+A+ FV E+R L +IE + Sbjct: 303 GIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFE 362 Query: 368 IPEVELPNAELLGKRRLEKFAA--KVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLA 425 I ++E P+ E + +++ E A + + + + ++ + +++ Sbjct: 363 IQKIEAPSQEEVARKKPEFLAKLNDRPESKKDKSEELNKDIMKLYFNGGKKKKIRAVDFV 422 Query: 426 AALLKM 431 + K+ Sbjct: 423 GTIAKI 428 Score = 74.4 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 25/155 (16%), Positives = 50/155 (32%), Gaps = 2/155 (1%) Query: 408 SKIQPTAEGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRG 467 + G + + A K + + + + + P Sbjct: 327 RTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQKIEAPSQEEVARKKPEFLAKLN 386 Query: 468 PRGDREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFAS 527 R + + + E + M+LY G+ + VG IA +S+ IG I + + Sbjct: 387 DRPE-SKKDKSEELNKDIMKLYF-NGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN 444 Query: 528 HSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGD 562 S +E+ G VL+ T + K + + Sbjct: 445 ASYVEILNGKGPHVLKVMKNTTVKGKQLKVNKANK 479 >UniRef50_D2QGG1 DEAD/DEAH box helicase domain protein n=2 Tax=Bacteria RepID=D2QGG1_9SPHI Length = 485 Score = 577 bits (1488), Expect = e-163, Method: Composition-based stats. Identities = 156/486 (32%), Positives = 254/486 (52%), Gaps = 9/486 (1%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 F++L L PIL+AL + GY P+PIQ + IP LL+ RD+LG AQTG+GKTAAF++P+L Sbjct: 1 MQFSELSLIDPILKALTEEGYTNPTPIQEKAIPILLSRRDLLGCAQTGTGKTAAFAIPIL 60 Query: 66 QNLDPE-------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQ 118 Q L E + + L+L PTRELA+Q+AE+ T + +H+ + ++GG Q Sbjct: 61 QLLSEERSKSTGGPRRIKTLILTPTRELAIQIAESFTAYGRHL-NIRNTVIFGGVSQHSQ 119 Query: 119 LRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP 178 + L+ G +++ TPGRLLD + +G + L + VLDEAD ML MGFI DV+ ++ ++P Sbjct: 120 VNTLKAGVDVLIATPGRLLDLMNQGFISLRDVQFFVLDEADRMLDMGFIHDVKKVITKLP 179 Query: 179 EGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVR 238 Q+ FSATMP + ++ + P +V + +T I Q+ + V K + LV Sbjct: 180 THRQSLFFSATMPPDVAKLADTILNNPAKVEVTPVSSTADTIEQAMYFVGKEDKRKLLVH 239 Query: 239 FLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDI 298 L+ ++ +A++F RTK+ +V + L + G + A++G+ +Q R++ L K + Sbjct: 240 ILDDKNIKSALVFARTKHGADKVVKDLLKAGIGAEAIHGNKSQNARQRALSNFKSRETRV 299 Query: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLR 358 L+ATD+AARG+DV+ +S V+NY++P E+YVHRIGRTGRAG G AL F + E LR Sbjct: 300 LVATDIAARGIDVDELSHVINYELPNIPETYVHRIGRTGRAGHDGIALSFCDAEETEYLR 359 Query: 359 NIERTMKLTIPEVE-LPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGE 417 +I + + +P ++ P + + A+ Q + ++ S + Sbjct: 360 DIHKLIGKRVPVIDNHPYVLDIATATVTPAPARQGQGRGGNGGNRNGGGRSGGSGSFNRN 419 Query: 418 ELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPR 477 + + A A+ D R + + G+ Sbjct: 420 GNNNNSRRADNSGPARSTDQRSSSSDGSYRRDENSAPKRPSSRPSQPQSRGTGNSRFSNS 479 Query: 478 RERRDV 483 ++ Sbjct: 480 SSDKNY 485 >UniRef50_A3FQ59 Putative uncharacterized protein n=1 Tax=Cryptosporidium parvum Iowa II RepID=A3FQ59_CRYPV Length = 586 Score = 577 bits (1487), Expect = e-163, Method: Composition-based stats. Identities = 136/395 (34%), Positives = 209/395 (52%), Gaps = 12/395 (3%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 + + T+F G +++AL G+ +P+ IQ + P L+G D++G+A+TGSGKT F Sbjct: 163 VPKPITSFVTSGFPNFLVDALYRTGFTEPTAIQVQGWPVALSGHDMIGIAETGSGKTLGF 222 Query: 61 SLPLLQNLDPEL-----KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRY 115 LP + ++ + P LVLAPTREL Q+ E F + + A+YGG Sbjct: 223 LLPAMIHIRAQPLLRYGDGPICLVLAPTRELVEQIREQANQFG-SIFKLRNTAIYGGVPK 281 Query: 116 DVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMA 175 Q ++R G +I + PGRL+D L+ G +LS+++ LVLDEAD ML MGF + +++ Sbjct: 282 RPQQASIRNGVEICIACPGRLIDLLEEGYTNLSRVTYLVLDEADRMLDMGFEPQIRKLVS 341 Query: 176 QIPEGHQTALFSATMPEAIRRITRRFMKE-PQEVRIQSS--VTTRPDISQSYWTVWGMRK 232 QI QT L+SAT P+ ++++ R KE P + + S + +I Q V K Sbjct: 342 QIRPDRQTLLWSATWPKEVQKLARDLCKEIPIHINVGSVDALKASHNIKQYVNVVEESEK 401 Query: 233 NEALVRFLEA---EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLE 289 L FL E +IF TK + + L +G+ + ++GD Q R L Sbjct: 402 KAKLKMFLGQVMVESAPKVLIFCETKRGADILTKELRLDGWPALCIHGDKKQEERTWVLN 461 Query: 290 RLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFV 349 + G I+IATDVAARGLD++ I+ V+N+D P E Y+HRIGRTGRAG G +L F Sbjct: 462 EFRTGASPIMIATDVAARGLDIKDINFVINFDFPNQIEDYIHRIGRTGRAGATGVSLSFF 521 Query: 350 ENRERRLLRNIERTMKLTIPEVELPNAELLGKRRL 384 + R+ ++ + +K V +L + + Sbjct: 522 TPDKYRMASDLIKVLKEAKQRVPPELFKLSPQNKR 556 >UniRef50_D1INE6 Whole genome shotgun sequence of line PN40024, scaffold_66.assembly12x (Fragment) n=7 Tax=Eukaryota RepID=D1INE6_VITVI Length = 1180 Score = 576 bits (1486), Expect = e-163, Method: Composition-based stats. Identities = 164/629 (26%), Positives = 260/629 (41%), Gaps = 23/629 (3%) Query: 17 ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQ 76 +L + G+ P+PIQA+ P L RD++ +A+TGSGKT + +P +L PQ Sbjct: 33 LLFQVYSAGFSAPTPIQAQSWPVALQSRDIVAIAKTGSGKTLGYLIPGFIHLKRIRNNPQ 92 Query: 77 ----ILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGT 132 +LVL+PTRELA Q+ + F + R ++ LYGG QLR L +G IVV T Sbjct: 93 MGPTVLVLSPTRELATQIQDEAVKFGRSSR-LSCTCLYGGAPKGPQLRDLDRGADIVVAT 151 Query: 133 PGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPE 192 PGRL D L+ + L ++S LVLDEAD ML MGF + I+ ++P QT +++AT P+ Sbjct: 152 PGRLNDILEMRRVSLRQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPK 211 Query: 193 AIRRITRRFMKEPQEVRIQS--SVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD-AAI 249 +R+I + P +V I + + I+Q + M K++ L + L +++ I Sbjct: 212 EVRKIAADLLVNPVQVNIGNVDELVANKAITQYVEVLPYMEKHKRLEQILRSQEPGSKII 271 Query: 250 IFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGL 309 IF TK ++A L R + +AA++GD +Q R+ L + + GR +L+ATDVAARGL Sbjct: 272 IFCSTKKMCDQLARNLTRP-FGAAAIHGDKSQGERDYVLNQFRTGRSPVLVATDVAARGL 330 Query: 310 DVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIP 369 D++ I +V+NYD P E YVHRIGRTGRAG G A F ++ + ++ + ++ Sbjct: 331 DIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAYTFFAEQDAKYASDLVKVLEGANQ 390 Query: 370 EVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAALL 429 V ++ + + + D + S G +++ Sbjct: 391 RVPPEIRDMASRGGGMGRSRRWGSGTGGRDGGRGGRNDSSYGGRDGGRGGWGMAPSSSSR 450 Query: 430 KMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDMQLY 489 G R R + D D R R DRG R R + Sbjct: 451 LERGGGRGADQDQRDRDRYDHSYHDGHDFDTRSRYDRGYHAS-SIRAGERDRARSRSRSQ 509 Query: 490 RIEVGRDDG---------VEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGE 540 G+ G + R ++ + S +E + G Sbjct: 510 SPNKGQAYGDARSRSRSRSKSRSRSRSLERYNKAPPVRERSPVHSFHKSAMEQARSPHGR 569 Query: 541 VLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGR----GFGGERREGGRNFSGERREG 596 + + + + A R + + G N R Sbjct: 570 YVSPYNNDNVRERSPMRSFHKSAMEQKPQSSPPPQRQRVSPYNKDGTRGFTNSVNARGSS 629 Query: 597 GRGDGRRFSGERREGRAPRRDDSTGRRRF 625 + D G + Sbjct: 630 PERSQSPPGAAGVGKEKLKASDGDGGGKD 658 >UniRef50_B7VQT9 ATP-dependent RNA helicase n=15 Tax=Bacteria RepID=B7VQT9_VIBSL Length = 523 Score = 576 bits (1485), Expect = e-163, Method: Composition-based stats. Identities = 155/484 (32%), Positives = 249/484 (51%), Gaps = 5/484 (1%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 +F LGL PIL+A+ GY+KPSPIQ + +P +L G+DV+ AQTG+GKTA F+LP+L Sbjct: 1 MSFTSLGLSEPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPIL 60 Query: 66 QNLDPELK----APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 + L + + LVL PTRELA QV ++ + ++ + ++GG + + Q++ Sbjct: 61 EMLSKGPRVRQNQVRALVLTPTRELAAQVNGSVVKYGINLP-LTSTVVFGGVKINPQMQK 119 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 LR+G ++V TPGRLLD + + +L LVLDEAD ML MGFI D+ I+A +P+ Sbjct: 120 LRKGSDVLVATPGRLLDLYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRKILAFLPKKR 179 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 Q LFSAT + IR + + + P E+ + + +T P + QS + V +K L + ++ Sbjct: 180 QNLLFSATFSDDIRSLAKGLVNNPVEISVSPANSTAPTVEQSIYPVDKKKKAPMLAKLIK 239 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 D+ ++F +TK+ ++A LE SA ++G+ +Q R + LE K G++ +L+A Sbjct: 240 DNDWRQVLVFSKTKHGANKLARFLEEQDITSAPIHGNKSQGARTKALENFKTGKVRVLVA 299 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 TD+AARG+D+ ++ VVN+D+P SE YVHRIGRTGRAG G+A+ V E L IE Sbjct: 300 TDIAARGIDIPQLPQVVNFDLPNVSEDYVHRIGRTGRAGEVGKAISLVCADEVGELFGIE 359 Query: 362 RTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDL 421 R ++ + EL + K + ++ + + ++ + + Sbjct: 360 RLIQQVLERRELEGFAPVNKLPESRLDSRPIKPKKPKKTREHSDGQRSGENARGHKPAGK 419 Query: 422 ETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERR 481 A A + + D+ R RG + + Sbjct: 420 NKRHVAGNGSAPKRKPNSGNKASDSNSAAAGDDKSLRNNGSNYKRGNKPSTNSSGKPGGA 479 Query: 482 DVGD 485 Sbjct: 480 GKPK 483 >UniRef50_B0SU57 ATP-dependent RNA helicase, DEAD-box family (DeaD) n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SU57_LEPBP Length = 534 Score = 576 bits (1485), Expect = e-162, Method: Composition-based stats. Identities = 199/522 (38%), Positives = 284/522 (54%), Gaps = 8/522 (1%) Query: 2 AEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFS 61 E F GL+ IL+ + + G+E PSPIQ + IP +L G+D++ AQTG+GKTAA+ Sbjct: 11 TEVGNDFQSFGLRPEILQGITEAGFESPSPIQKQAIPLVLEGKDLIAQAQTGTGKTAAYG 70 Query: 62 LPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 LP L + E Q+LVL PTRELA+QV++ + KH+ G+ +YGG Y Q+ Sbjct: 71 LPCLNRIKVE-DGMQVLVLTPTRELALQVSDELFKLGKHL-GIKTTTIYGGSSYSKQITQ 128 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 + +G Q+ V TPGRLLD LK L K S ++LDEADEML MGF++D+E+I +P Sbjct: 129 VAKGAQVAVATPGRLLDLLKGKELKNFKPSMVILDEADEMLDMGFMDDIESIFNLLPTKR 188 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 QT LFSATMPE I+++ ++ P V+I ++ + +I Q Y+ + + A+VR L+ Sbjct: 189 QTLLFSATMPEPIKKLASKYQTHPAHVKIAATEKSSKNIEQVYYIIDEAEREIAVVRILD 248 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 E+ AIIF +TK ++ L GY AL+GD+NQ REQ L+ L DGR+ IL+A Sbjct: 249 YENPFKAIIFTKTKKEADDLKSTLSFKGYPVEALHGDLNQKQREQVLKSLHDGRVKILVA 308 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 TDVAARGLDV+ +SLV+NY +P DSESY HRIGRTGRAG++G+A+ V RE R L ++ Sbjct: 309 TDVAARGLDVKDLSLVINYHLPFDSESYTHRIGRTGRAGKSGKAVTLVTTRESRALLRLK 368 Query: 362 RTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDL 421 T + LP + + R E F KV +D + A+L K+ + + L Sbjct: 369 GTSGTNLTIAALPTKKEVHLSREEDFLKKVVDTEIHADAE---AVLEKLLKLEDKRSIAL 425 Query: 422 ETLAAALL--KMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRE 479 + L+ L K++ E+ P + P R G RG Sbjct: 426 KLLSKMLDNTKISGPEKIGKTPAEWSEMPPGGGSGGRRRRDDGGGSGGGRGGYRGARSNS 485 Query: 480 RRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGN 521 R + R E G + R A EG + + G Sbjct: 486 DRSERSDRGDRKERGGESSSR-RASTPASKKEGGVYVKAAGK 526 >UniRef50_A2QC74 ATP-dependent RNA helicase dbp2 n=35 Tax=Eukaryota RepID=DBP2_ASPNC Length = 565 Score = 576 bits (1485), Expect = e-162, Method: Composition-based stats. Identities = 137/389 (35%), Positives = 223/389 (57%), Gaps = 10/389 (2%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 + TF + G +L + G+++P+ IQ++ P L+GRDV+G+A+TGSGKT + Sbjct: 132 VPRPVETFDEAGFPQYVLSEVKAQGFDRPTAIQSQGWPMALSGRDVVGIAETGSGKTLTY 191 Query: 61 SLPLLQNLDPEL-----KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRY 115 LP + +++ + P +L+LAPTRELAVQ+ ++ F K R + +YGG Sbjct: 192 CLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQAEISKFGKSSR-IRNTCVYGGVPK 250 Query: 116 DVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMA 175 Q+R L +G ++ + TPGRL+D L+ G +L +++ LVLDEAD ML MGF + I++ Sbjct: 251 GPQIRDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIIS 310 Query: 176 QIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQS-SVTTRPDISQSYWTVWGMRKNE 234 QI QT ++SAT P+ +R++ F+ + +V I S ++ I+Q V K + Sbjct: 311 QIRPDRQTCMWSATWPKEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRD 370 Query: 235 ALVRFLE---AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERL 291 +++ LE + +IF TK E+ L ++G+ + +++GD Q R+ L Sbjct: 371 KMIKHLEKIMENRANKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEF 430 Query: 292 KDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVEN 351 K G+ I++ATDVA+RG+DV I+ V+NYD P +SE YVHRIGRTGRAG G A+ F Sbjct: 431 KTGKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTT 490 Query: 352 RERRLLRNIERTMKLTIPEVELPNAELLG 380 + R++ + +++ AE++ Sbjct: 491 DNSKQARDLVTILTEAKQQIDPRLAEMVR 519 >UniRef50_C4Q0V4 DEAD box ATP-dependent RNA helicase, putative n=1 Tax=Schistosoma mansoni RepID=C4Q0V4_SCHMA Length = 769 Score = 575 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 139/401 (34%), Positives = 223/401 (55%), Gaps = 9/401 (2%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 + +F +L + IL + G++ P+PIQ++ P L+GRDV+G+AQTGSGKTA+F Sbjct: 87 VPRPVLSFNELNVPDYILSVIAKNGWQLPTPIQSQGWPMALSGRDVVGIAQTGSGKTASF 146 Query: 61 SLPLLQNLDPELK-----APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRY 115 LP + ++ + + P L+L PTRELA QV +F+ + + YGG Sbjct: 147 LLPAVIHIMAQPRLLRNEGPICLILVPTRELAQQVLVVAKEFA-DAASLRAMCFYGGSAK 205 Query: 116 DVQLRALRQGPQIVVGTPGRLLDHLK-RGTLDLSKLSGLVLDEADEMLRMGFIEDVETIM 174 QLR +++G +I + TPGRL+D ++ + L LS+++ LVLDEAD ML MGF + I+ Sbjct: 206 GTQLREMQKGGEICIATPGRLIDFIRVQRNL-LSRVTYLVLDEADRMLDMGFEPQIRKII 264 Query: 175 AQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVT-TRPDISQSYWTVWGMRKN 233 QT ++SAT P ++ + R F+ + +V I S P+I+Q + K Sbjct: 265 GHTRPDRQTLMWSATWPREVQTLAREFLTDYIQVNIGSVSLHANPNITQIVEIMDDWSKE 324 Query: 234 EALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKD 293 + L+ L + ++FV TK T ++ +L R G+ A++G Q RE TL K Sbjct: 325 QRLIELLTSFGRARTLVFVETKRRTDQLTNSLRRRGFYVEAMHGGKQQRDRELTLANFKS 384 Query: 294 GRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRE 353 GR++IL+ATDVA+RGLD++ I VVN+D P +E Y+HRIGRT R+ + G A F ++ Sbjct: 385 GRMNILVATDVASRGLDIDNIEYVVNFDFPNQTEDYIHRIGRTARSDKTGTAFTFFTHKN 444 Query: 354 RRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQ 394 R R++ + E+ +L G + ++ +++ Sbjct: 445 VRQARDLIDILDEANQEISAELVQLAGMSNYLRKSSTLKKN 485 >UniRef50_Q24I45 DEAD/DEAH box helicase family protein n=2 Tax=Tetrahymena thermophila RepID=Q24I45_TETTH Length = 713 Score = 575 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 152/506 (30%), Positives = 241/506 (47%), Gaps = 28/506 (5%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 + + ++ D I+ + +EKPSPIQ+ P +L+G D++G+A+TGSGKT +F Sbjct: 96 VPDPFLSWTDTHFPQYIMNEVTHAKFEKPSPIQSLAFPVVLSGHDLIGIAETGSGKTLSF 155 Query: 61 SLPLLQNLDPEL-----KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRY 115 LP + +++ + P +LVLAPTRELA+Q+ F K + + +YGG Sbjct: 156 LLPSIVHINAQPTVKKGDGPIVLVLAPTRELAMQIERESERFGKSSK-LKCACIYGGADK 214 Query: 116 DVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMA 175 Q L+QG +V+ TPGRL+D L+ T L +++ LVLDEAD ML MGF + I+ Sbjct: 215 YSQRALLQQGVDVVIATPGRLIDFLESETTTLRRVTYLVLDEADRMLDMGFEIQIRKILG 274 Query: 176 QIPEGHQTALFSATMPEAIRRITRRFMKE-PQEVRIQSSVTT-RPDISQSYWTVWGMRKN 233 QI QT +FSAT P+ ++ + + + K P V+I I Q + +K Sbjct: 275 QIRPDRQTLMFSATWPKNVQNLAQDYCKNTPVYVQIGKHELAINERIKQIVYVTDQSKKI 334 Query: 234 EALVRFLE-AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLK 292 L++ L+ D +IF +TK ++ L + G+ A++GD Q R+ + + K Sbjct: 335 NQLIKQLDCLTQKDKVLIFAQTKKGCESMSRILNKEGFKCLAIHGDKAQKDRDYVMNKFK 394 Query: 293 DGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVE-N 351 G ILIATDVA+RGLDV+ +S V NYD P E YVHRIGRTGRAG G A+ F+ Sbjct: 395 SGECRILIATDVASRGLDVKDVSHVFNYDFPKVMEDYVHRIGRTGRAGAYGCAVSFLTFE 454 Query: 352 RERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQ 411 ++++ R + + E+ + +L + QY+ + S Sbjct: 455 DDKKISREYVQMLHDAKQEIPIDLLDL--------------ASINPRYRTQYKTVSSSYY 500 Query: 412 PTAEGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGD 471 + D + + + + +D DD+ R R+ Sbjct: 501 DIKKFNSADTSKPSENQNVSNTANSSDKYTSSSSYNQYKSKKDEDDKRSRSRS----PYK 556 Query: 472 REDRPRRERRDVGDMQLYRIEVGRDD 497 E+ R ++ + YR G Sbjct: 557 SENNNRWDKYNRTKSPEYRSSNGSSH 582 >UniRef50_C7PD17 DEAD/DEAH box helicase domain protein n=139 Tax=root RepID=C7PD17_CHIPD Length = 492 Score = 575 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 150/467 (32%), Positives = 240/467 (51%), Gaps = 13/467 (2%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 +F LGL P+L+AL++ GY P+PIQ + IPH+L+ RD+LG AQTG+GKTAAF++P Sbjct: 25 TILSFEQLGLIEPLLKALDNEGYTAPTPIQQQAIPHVLDTRDLLGCAQTGTGKTAAFAIP 84 Query: 64 LLQNLDPEL--------KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRY 115 LLQ + + + + L+L PTRELA+Q+ E+ T + K + + + ++GG Sbjct: 85 LLQLMHQDQQAQQRKGLRNIKALILTPTRELAIQIQESFTAYGKFL-DLKSLVIFGGVSQ 143 Query: 116 DVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMA 175 Q AL++G I++ TPGRLLD + + + L + VLDEAD ML MGF+ DV+ ++ Sbjct: 144 HPQTEALKKGVDILIATPGRLLDLISQNYITLRDIKYFVLDEADRMLDMGFVHDVQRVIV 203 Query: 176 QIPEGHQTALFSATMPEAIRRITRRFM-KEPQEVRIQSSVTTRPDISQSYWTVWGMRKNE 234 ++PE Q+ FSATMP I+ + + + P +V + +T I+QS + V K Sbjct: 204 KLPEQRQSLFFSATMPPEIQTLAKAILRNNPAKVEVTPVSSTAETITQSMYFVNKNDKRN 263 Query: 235 ALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDG 294 L+ L+ + ++F RTK+ V + L + + A++G+ +Q R++ L K Sbjct: 264 LLLHILKDKAIKTLLVFTRTKHGADRVVKDLHKAEITAEAIHGNKSQNARQRALNNFKSQ 323 Query: 295 RLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRER 354 + +L+ATD+AARG+D++ ++ VVNY++P E+YVHRIGRTGRAG G A+ F E E+ Sbjct: 324 QTRVLVATDIAARGIDIDELTHVVNYELPNVPETYVHRIGRTGRAGADGIAISFCEPEEK 383 Query: 355 RLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTA 414 L++I + + IP + A + R Sbjct: 384 AFLKDILKLISREIP---VETEHPFHNGDSMALPAPKPAPQQKPKQQHPRDKKGGFSRNR 440 Query: 415 EGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPR 461 +G + A + P P+ Sbjct: 441 QGVVQSRDARPGAGAGKPNSGKPNGGRPQGGKPKDGNGNSARRERPQ 487 >UniRef50_B4WCQ8 DEAD/DEAH box helicase domain protein n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WCQ8_9CAUL Length = 510 Score = 573 bits (1479), Expect = e-162, Method: Composition-based stats. Identities = 179/490 (36%), Positives = 271/490 (55%), Gaps = 9/490 (1%) Query: 2 AEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFS 61 TTF +GL +L+AL GY KP+PIQ + IP ++ G+D+LG+AQTG+GKTAAF+ Sbjct: 12 TAVSTTFESMGLNKALLQALASEGYTKPTPIQEKAIPDVMQGKDLLGIAQTGTGKTAAFA 71 Query: 62 LPLLQN-----LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYD 116 LP+L + P+ + ++LVL+PTRELA Q+ ++ + H+ G V ++GG +Y Sbjct: 72 LPILHRLAENRIAPKPRTTRVLVLSPTRELATQIGDSFKAYGAHL-GFRVAVIFGGVKYG 130 Query: 117 VQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQ 176 Q RAL+QG I+V PGRLLDH+++ LDLS LVLDEAD+ML +GFI+ + I+++ Sbjct: 131 AQERALQQGLDILVAAPGRLLDHIQQKNLDLSSTEILVLDEADQMLDLGFIKPIRQIVSR 190 Query: 177 IPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEAL 236 IP Q FSATMP I ++ +K+P +V++ TT ISQS V RK L Sbjct: 191 IPAKRQNLFFSATMPTEIGKLAGELLKDPVKVQVTPQSTTVQRISQSVVHVEQGRKRALL 250 Query: 237 VRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRL 296 ++ ++F +TK+ +VA LE G + A++G+ +Q RE+TL+ K G+L Sbjct: 251 TEMFSDPEYTRCLVFTKTKHGADKVAAYLEAGGVEAGAIHGNKSQPQRERTLDAFKKGKL 310 Query: 297 DILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRL 356 +L+ATD+AARG+DV+ +S VVN+++P E+YVHRIGRT RAG G A+ FV E +L Sbjct: 311 RVLVATDIAARGIDVDGVSHVVNFELPHVPEAYVHRIGRTARAGADGTAISFVAGDEMKL 370 Query: 357 LRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEG 416 L++IE+ + IP ++ N + LG+ A V ++ + + + Sbjct: 371 LKDIEKVTRQKIPAIDRRNDKALGQLDATIMATGVGKKATMPEREG-GERNEGGRGGRGR 429 Query: 417 EELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPR--DRNDRGPRGDRED 474 + + P + P P+ E G R ND + E Sbjct: 430 SRVPHRDGVRPEGGGQPHRQRRARPGETPAAPRPERAYNPLAGERVPSINDNAKPAEGEM 489 Query: 475 RPRRERRDVG 484 + R RR Sbjct: 490 KRRPRRRPSN 499 >UniRef50_B0SEU1 Superfamily II DNA and RNA helicase n=5 Tax=cellular organisms RepID=B0SEU1_LEPBA Length = 471 Score = 573 bits (1478), Expect = e-162, Method: Composition-based stats. Identities = 155/475 (32%), Positives = 246/475 (51%), Gaps = 9/475 (1%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 M + TF+DL L I +A+ + GY KP+PIQ + IP LL+ D+LG AQTG+GKTAAF Sbjct: 1 MQKQIETFSDLKLDRYIQKAVAETGYTKPTPIQIQAIPLLLDNHDLLGCAQTGTGKTAAF 60 Query: 61 SLPLLQNL-----DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRY 115 +LP++ NL P K P+ LVL PTRELA+QV E+ + K+ + + ++GG Sbjct: 61 ALPMIHNLISTRAKPNPKQPRSLVLVPTRELAIQVHESFVLYGKYTQ-IRTAVIFGGVGQ 119 Query: 116 DVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMA 175 + Q +A+ G +++ TPGRL+D + + + L L VLDEAD ML MGFI D+ I++ Sbjct: 120 NPQAKAIASGLDVLIATPGRLVDLMNQNLVSLKNLEIFVLDEADRMLDMGFIHDIRKIIS 179 Query: 176 QIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA 235 +P+ Q FSATMP I ++ + EP + + +T ISQS K Sbjct: 180 YLPKRRQNLFFSATMPPEIEKLANSILVEPIRIDVTPVSSTVELISQSVMYTELADKKNL 239 Query: 236 LVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGR 295 L+ + ++F IIF +TK+ +++E L ++G + ++G+ +Q+ R++ LE + G+ Sbjct: 240 LLHLFKDKNFKKTIIFTKTKHGANKISELLNKSGIKTDVIHGNKSQSARQRALEDFRSGK 299 Query: 296 LDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERR 355 L+ATD+AARG+D++ I+ V+NY+IP E+YVHRIGRT RAG+ G A+ E ER Sbjct: 300 NRALVATDLAARGIDIDDITHVINYEIPYVPETYVHRIGRTARAGKNGIAIAIAEADERS 359 Query: 356 LLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAE 415 L+++IE+ + ++IP + R+E K + S + Sbjct: 360 LIKDIEKVIGISIP---VDRDHPYHAARVESHTGKAPKLHGSGGGGNRGQRRPTQSGDSS 416 Query: 416 GEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRG 470 + ++ P + R + Sbjct: 417 SGRNRNSQQNSKQNSNRSQGQSEKRKPSDSGYKSEPKKSSPSAKKSPRAKKSRYR 471 >UniRef50_Q2BP56 Putative ATP-dependent RNA helicase n=1 Tax=Neptuniibacter caesariensis RepID=Q2BP56_9GAMM Length = 427 Score = 572 bits (1475), Expect = e-161, Method: Composition-based stats. Identities = 160/421 (38%), Positives = 250/421 (59%), Gaps = 5/421 (1%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 ++FA+L L + L +LGYE+P+PIQ++ IP +L G D+L AQTG+GKTA+F+LP++ Sbjct: 4 SSFAELALCPELQFTLKNLGYEQPTPIQSQAIPLVLRGDDLLAEAQTGTGKTASFALPII 63 Query: 66 QNLDPEL----KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 + L + + LVLAPTRELA+QVA+ ++ + + G+ V+++YGG + Q++ Sbjct: 64 EKLSKNPIDGYRPVRALVLAPTRELAIQVADNTLEYGRDL-GMRVISVYGGVPVENQIKR 122 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 L++G I+V TPGRLLD L++ + L KL LVLDEAD ML +GFI+ ++ IM + Sbjct: 123 LKRGTDILVATPGRLLDLLRQKAISLEKLEYLVLDEADRMLDLGFIDPIQKIMDYAADDR 182 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 QT LF+AT E++ + ++ P ++++ +T I Q + V +K + L + Sbjct: 183 QTLLFTATADESVEVLAEFYLNNPTKIKVTPRNSTAKQIRQFAYQVDYGQKADILSYLIT 242 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 + ++FVRTK E+ + L + G N+AA++G+ +Q R + L G L +L+A Sbjct: 243 EGKWGQTLVFVRTKKRVDELTQYLCKEGINAAAIHGEKSQRERVRMLNEFIAGDLHVLVA 302 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 TDVAARGLD+E + VVNYD+P E+YVHRIGRTGRAG G A+ V ER L+ IE Sbjct: 303 TDVAARGLDIESLPYVVNYDLPNQPEAYVHRIGRTGRAGETGEAVSLVAPAEREFLQRIE 362 Query: 362 RTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDL 421 + +K I +P E + ++ FA K ++ + Q R + QP + + Sbjct: 363 KLIKQKIKLRPVPRIEDGKRLEIDDFADKPMKRKPAKAKQQKRKKVESYQPDKSKKAIRP 422 Query: 422 E 422 Sbjct: 423 S 423 >UniRef50_D2MPZ3 Putative ATP-dependent RNA helicase RhlE n=1 Tax=Bulleidia extructa W1219 RepID=D2MPZ3_9FIRM Length = 425 Score = 572 bits (1475), Expect = e-161, Method: Composition-based stats. Identities = 167/410 (40%), Positives = 235/410 (57%), Gaps = 3/410 (0%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 TF + L+ P+L++L Y+KPSPIQ + IP LL G D++ AQTG+GKTA F+LP+L Sbjct: 1 MTFNEFNLRKPLLDSLAKASYKKPSPIQEKGIPILLEGSDLIACAQTGTGKTATFALPIL 60 Query: 66 QNLDPELKA-PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 +L E + L+L PTRELA Q+ E + F ++M + +YGG QL+A+R Sbjct: 61 NSLSKEKNHSIRALILTPTRELATQIFENIKMFGRYMH-LRACCVYGGSPAAPQLKAIRS 119 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 G I++ TPGRLLD+L G + L + LVLDEAD ML MGFI DV I+ QIP TA Sbjct: 120 GCDILIATPGRLLDYLAHGKISLRHIEFLVLDEADRMLDMGFIADVRKIVQQIPNDRITA 179 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 LFSATMP+ I+ + R +K P+EVRI++ T I Q K + LV L E Sbjct: 180 LFSATMPKEIQELARDILKNPKEVRIEAEKFTASTIDQYLIYTEKSSKKKVLVNLLNTES 239 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 I+F RTK + + L+ ++GD Q R L+R + ++ ILIATDV Sbjct: 240 IKKTIVFTRTKIGADRLEKYLKEKEIACLVIHGDKTQGQRLNALQRFRTNQIRILIATDV 299 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 AARG+D++ IS V+N+D+P D E+YVHRIGRTGRA + G ++ V E LL NIE + Sbjct: 300 AARGIDIKDISHVINFDLPEDIENYVHRIGRTGRAKQEGVSISLVCKEELNLLANIESYI 359 Query: 365 KLTIP-EVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPT 413 + IP + L + L K++ + K ++ E + R+ Sbjct: 360 QFQIPLKQNLYSLPLERKKKRKSSIHKTTRKKERFSNQKKRSKKKSFHEG 409 >UniRef50_C5PZD1 ATP-dependent RNA helicase n=5 Tax=Bacillales RepID=C5PZD1_STAAU Length = 517 Score = 572 bits (1474), Expect = e-161, Method: Composition-based stats. Identities = 180/500 (36%), Positives = 283/500 (56%), Gaps = 5/500 (1%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 F +LG+ +++L +G+++P+PIQ + IP+ L G D+LG AQTG+GKT AF +PL+ Sbjct: 13 QNFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLI 72 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 + + + + Q L+LAPTRELA+QVAE + +FS+ +GV VV ++GG + Q++AL++G Sbjct: 73 EKVVGK-QGVQSLILAPTRELAMQVAEQLREFSRG-QGVQVVTVFGGMPIERQIKALKKG 130 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE-GHQTA 184 PQIVVGTPGR++DHL R TL + L+LDEADEM+ MGFI+D+ IM +IP QT Sbjct: 131 PQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTM 190 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 LFSATMP+AI+ + ++FMK P+ ++ ++ + P I + Y V + K + FL+ Sbjct: 191 LFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDVHQ 250 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 + AI+F RTK E+ AL GY + L+GD+ QA R + L++ K+ +++IL+ATDV Sbjct: 251 PELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDV 310 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 AARGLD+ +S V N+DIP D+ESY HRIGRTGRAG+ G A+ FV E +R IE Sbjct: 311 AARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDAN 370 Query: 365 KLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLE-- 422 + + P+ + + + R + KV+ + + + + +++ +L Sbjct: 371 GRKMSALRPPHRKEVLQAREDDIKEKVENWMSKKSESRLKRISTELLNEYNDVDLVAALL 430 Query: 423 TLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRD 482 + + T P R + R+ R + R +++ Sbjct: 431 QELVEANDEVEVQLTFEKPLSRKGRNGKPSGSRNRNSKRGNPKFDSKSKRSKGYSSKKKS 490 Query: 483 VGDMQLYRIEVGRDDGVEVR 502 G ++ R Sbjct: 491 TKKFDRKEKSSGGSRPMKGR 510 >UniRef50_C8PWG8 Cold-shock DEAD box protein A homolog n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PWG8_9GAMM Length = 777 Score = 571 bits (1473), Expect = e-161, Method: Composition-based stats. Identities = 191/644 (29%), Positives = 286/644 (44%), Gaps = 59/644 (9%) Query: 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 E F LGL +L+++ GY P+PIQA IP L GRD+L AQTGSGKTAAF LP+ Sbjct: 68 ENGFTALGLSGSLLKSIVATGYTTPTPIQARAIPAALEGRDLLLSAQTGSGKTAAFVLPI 127 Query: 65 LQNLDP-------------------ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVN 105 L L + K Q L+L PTRELA QV +++ + M+ + Sbjct: 128 LHQLSELQAKEKAAEKTASGKRGRQQPKVVQALILTPTRELANQVQDSIRKYGSAMKDLY 187 Query: 106 VVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMG 165 V L GG Y Q+RAL++G QI+V TPGRLLDH+ ++LS L+ LVLDEAD ML MG Sbjct: 188 SVPLVGGAAYSGQIRALKKGVQIIVATPGRLLDHINAQRVNLSDLTMLVLDEADRMLDMG 247 Query: 166 FIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYW 225 F +D+ I+ P QT + SAT + +I F K+P+ + I+ I + + Sbjct: 248 FADDINAILEATPAHRQTIMSSATWDGPVGKIAESFTKDPERINIKVETA---HIDEKVY 304 Query: 226 TVWG-MRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALR 284 KN+ L + + + AIIF TK ++ EVAE L++ + + L+GD+ Q+ R Sbjct: 305 FCDNFDHKNKLLEQLICDPERGQAIIFTATKRSSEEVAERLQQWDHKACYLHGDLPQSKR 364 Query: 285 EQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGR 344 + + L+ G+ DI++ATDVAARGLD+ I+ V NYD+P E YVHRIGR+GRAGR G Sbjct: 365 NRIVSDLRSGKFDIVVATDVAARGLDLPNITHVFNYDLPRQVEDYVHRIGRSGRAGRTGI 424 Query: 345 ALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYR 404 A+ +RR NI R +K I E ++ E + +E + Sbjct: 425 AINLCSRDDRRQFGNIARYLKRDINEAQVEGLEP--------------RFVEKFEGRGKP 470 Query: 405 ALLSKIQPTAEGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRN 464 G + + + K F +++ G N Sbjct: 471 NGRDGRGRGRSGSDSRGGRDDRGSRSQRFAGSSDRPSSERRFADKPRFDNQERYGKPASN 530 Query: 465 DRGPRGDREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKL 524 D R ++ +R + + D + GRDD R + + G+ Sbjct: 531 DSSARFEKRERFDKGHQGNSDSR-----FGRDDASAPRRHRDSDNHHGNSQG-------- 577 Query: 525 FASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERRE 584 P R +P + + + G +G+ G++ Sbjct: 578 --DFHRAAKSSDKPNFDRDSRQGNR---EPRQGEYADRRRDDNRSFNKDGFKGYQGDKPR 632 Query: 585 GGRNFSGERREGGRGD----GRRFSGERREGRAPRRDDSTGRRR 624 + + R G R + RF + + R + G R Sbjct: 633 YNTDRNSNERHGERPNRFEKNDRFGDKPFAKKTERSSEFRGDER 676 >UniRef50_Q5HME0 Probable DEAD-box ATP-dependent RNA helicase SERP1688 n=56 Tax=Staphylococcus RepID=Y1688_STAEQ Length = 509 Score = 571 bits (1473), Expect = e-161, Method: Composition-based stats. Identities = 188/480 (39%), Positives = 285/480 (59%), Gaps = 8/480 (1%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 F +LG+ ++ L +G+++P+PIQ + IP+ L G D+LG AQTG+GKT AF +PL+ Sbjct: 2 QNFKELGISDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPLI 61 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 + + + + Q L+LAPTRELA+QVAE + +FSK + V VV ++GG + Q++AL++G Sbjct: 62 EKVVGQ-QGVQSLILAPTRELAMQVAEQLREFSKGQK-VQVVTVFGGMPIERQIKALKRG 119 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG-HQTA 184 PQIVVGTPGR++DHL R TL + L+LDEADEM+ MGFI+D+ IM +IP QT Sbjct: 120 PQIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQTM 179 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 LFSATMP+AI+ + ++FMK P+ ++ ++ + P I + Y V + K + FL+ Sbjct: 180 LFSATMPKAIQELVQQFMKAPKIIKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFLDVHQ 239 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 + AI+F RTK E+ AL GY + L+GD+ QA R + L++ K+ ++DIL+ATDV Sbjct: 240 PELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDV 299 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 AARGLD+ +S V N+DIP D+ESY HRIGRTGRAG+ G A+ FV E +R IE Sbjct: 300 AARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDVN 359 Query: 365 KLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETL 424 + + P+ + + K R + +VQ + + + + + S++ E D L Sbjct: 360 NRRMKALRPPHRKEVLKAREDDIKDRVQNWMSRENEPRLQRISSELLK-----EYDSTEL 414 Query: 425 AAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVG 484 A+LL+ + +P G R N + G +++ RR + G Sbjct: 415 VASLLQELVEANDEVEVQLTFEKPLARKNRSSKGGSRRSNHKRGNGKFDNKNRRSKGSKG 474 >UniRef50_B1CAG5 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1CAG5_9FIRM Length = 510 Score = 571 bits (1472), Expect = e-161, Method: Composition-based stats. Identities = 159/503 (31%), Positives = 268/503 (53%), Gaps = 7/503 (1%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 +TTF++L + I L+++G+ P+ IQ + IP + +G DV+G +QTG+GKT AF++P Sbjct: 2 NKTTFSELEINLDINRVLDEMGFTNPTDIQNKAIPAIRSGVDVIGKSQTGTGKTIAFAIP 61 Query: 64 LLQNLDPELKAP--QILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 ++ +D E + P Q+L++ PTRELA Q + +K+M + VV +YGG + Q+ Sbjct: 62 AIEKIDIEQEKPTAQVLIICPTRELAQQGYAEIKKLTKYMPEIKVVDIYGGVSMERQISK 121 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 L++ IV+GTPGR+ DHLKR TL L + +VLDEADEML MGF ED++TI+ P+ Sbjct: 122 LKK-AHIVIGTPGRIKDHLKRRTLKLQNIKMVVLDEADEMLSMGFKEDIDTILKTAPDTR 180 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 QT LFSATMP AI I F+K P ++I T I+Q+Y V +K E L L Sbjct: 181 QTVLFSATMPPAIMNIIDTFLKNPLLIQIDKEQVTVNKIAQNYIDVPKGKKKEVLNLLLH 240 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 IIF TK ++ + L +NG+++ L+GD+ Q R + + K+ + IL+A Sbjct: 241 YYGSKLTIIFCNTKRMVDDLTKFLRKNGFSAECLHGDIRQNERSRVMSNFKNAKTPILVA 300 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFV-ENRERRLLRNI 360 TDVAARG+DV+ + V+NYDIP +SE Y+HRIGRT R G+ G ++ ++ L+ I Sbjct: 301 TDVAARGIDVKDVEYVINYDIPQNSEYYIHRIGRTARGGKTGTSITMTNNRKQVTDLKMI 360 Query: 361 ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELD 420 + I ++++P + + + + + L+ + + + ++S ++ E Sbjct: 361 LKETNSKIKKLDIPTKNDINSKNSKDNMSVIISALKREN-NSHDEMISDLKDLGYSENQI 419 Query: 421 LETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRER 480 + L + + ++ D + + + + ++ R + G++ + Sbjct: 420 AKAAL--NLYFGETKENIVKIEDISINKETKRYNDGNKNNARRKKQKSYGNKSLKDDLIF 477 Query: 481 RDVGDMQLYRIEVGRDDGVEVRH 503 + R+ + Sbjct: 478 YENNRRTSSSKNSNRNKKRTNGN 500 >UniRef50_Q6MN50 ATP-dependent RNA helicase n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MN50_BDEBA Length = 656 Score = 571 bits (1472), Expect = e-161, Method: Composition-based stats. Identities = 199/631 (31%), Positives = 304/631 (48%), Gaps = 37/631 (5%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNG-RDVLGMAQTGSGKTAAFSLPLL 65 F GL AP++ A+ D+G+ P+PIQ + +P LL G D +G+A TG+GKTAAF +PL+ Sbjct: 45 NFESFGLSAPVMAAMADMGFTTPTPIQRQALPILLAGANDFIGLASTGTGKTAAFGIPLI 104 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 +N+D +K Q LVL+PTRELA+QVAE +T K +GV VV +YGG Y Q+ +++G Sbjct: 105 ENIDSTVKDTQALVLSPTRELALQVAEQLTLLGK-KKGVRVVTIYGGASYRTQIDGIKRG 163 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG----- 180 IVV TPGRL+D L++ + L + +VLDEADEML MGF E +ETI++ Sbjct: 164 AHIVVATPGRLVDFLEQKMIKLQSVKTVVLDEADEMLSMGFKEALETILSATQPDDSDSV 223 Query: 181 ---HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALV 237 +T LFSATM +RR+T +++ P+ V + T I Q Y+TV K E + Sbjct: 224 RAACRTWLFSATMSSEVRRLTSTYLENPETVSVNKVGGTADTIEQVYYTVKNSYKTEVIG 283 Query: 238 RFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLD 297 R L+ IIF +TK E+A+ L + G+ + +L+GD +Q RE TL++ K ++ Sbjct: 284 RLLQTLPEFYGIIFCQTKMEVAELADVLTQRGFPADSLHGDKSQQEREATLKKFKQRQVK 343 Query: 298 ILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLL 357 +++ATDVAARGLD++ ++ VVN+ +P DSESYVHRIGRTGR G+ G A+ V + LL Sbjct: 344 VIVATDVAARGLDIKDLTHVVNHSLPWDSESYVHRIGRTGRNGQKGTAITLVNPEQLTLL 403 Query: 358 RNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQ-LESSDLDQYRALLSKIQPTAEG 416 R + + K + + +P+A+ + +++ KV E+ L L+ + + Sbjct: 404 RRVMQNTKAVLTKGVIPSADEVAGLKIKDVMDKVTSMDPEAVQLQLASDLIQDLIQAEDI 463 Query: 417 EELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRP 476 +L +A + V D + + R+ ++R RG R + Sbjct: 464 NFKELSKEELLARFIAAYFPNVFVKKDLMLDYMGDRVPRELLPRDPNDNRFTRGGRGNDR 523 Query: 477 RRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKG 536 R +R D + + G GA A Sbjct: 524 RDDRDDYRARRPFGGGRGASAPARGFRSEGARAEFSG----------------------- 560 Query: 537 MPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERREG 596 + + R ++P + + R ER S Sbjct: 561 -GEQRAERTERPAFRDRPERTER--PERAERPERSERAERAERSERSYRASASSDRPARA 617 Query: 597 GRGDGRRFSGERREGRAPRRDDSTGRRRFGG 627 R + R RR D G +RF G Sbjct: 618 ERSERSERPQRAETDRPERRGDHPGIKRFRG 648 >UniRef50_Q5N7W4 DEAD-box ATP-dependent RNA helicase 30 n=3 Tax=Oryza sativa Japonica Group RepID=RH30_ORYSJ Length = 666 Score = 570 bits (1471), Expect = e-161, Method: Composition-based stats. Identities = 143/409 (34%), Positives = 219/409 (53%), Gaps = 9/409 (2%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 + + F + ++A+ G+ +P+PIQ++ P L GRD++G+AQTGSGKT ++ Sbjct: 246 VPKPVRYFQEANFPDYCMQAIAKSGFVEPTPIQSQGWPMALKGRDMIGIAQTGSGKTLSY 305 Query: 61 SLPLLQNLDPELK-----APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRY 115 LP L ++ + + P +L+LAPTRELAVQ+ + F + R +YGG Sbjct: 306 LLPGLVHVGAQPRLEQGDGPIVLILAPTRELAVQIQQESGKFGSYSRT-RSTCIYGGAPK 364 Query: 116 DVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMA 175 Q+R LR+G +IV+ TPGRL+D L+ G +L +++ LVLDEAD ML MGF + I+A Sbjct: 365 GPQIRDLRRGVEIVIATPGRLIDMLEGGHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVA 424 Query: 176 QIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQ-SSVTTRPDISQSYWTVWGMRKNE 234 QI QT +SAT P + + R+F++ P +V I + I Q + K Sbjct: 425 QIRPDRQTLYWSATWPREVESLARQFLQNPYKVIIGSPDLKANHSIQQIIEVISEHEKYP 484 Query: 235 ALVRFL-EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKD 293 L + L + D +IF +TK +V L +G+ + +++GD QA R+ L K Sbjct: 485 RLSKLLSDLMDGSRILIFFQTKKDCDKVTRQLRMDGWPALSIHGDKAQAERDYVLAEFKS 544 Query: 294 GRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRE 353 G+ I+ ATDVAARGLDV+ I V+N+D P E Y+HRIGRTGRAG +G A F Sbjct: 545 GKSPIMAATDVAARGLDVKDIKCVINFDFPTTLEDYIHRIGRTGRAGASGTAFTFFTLSN 604 Query: 354 RRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQ 402 + RN+ + ++ V P E + K + + ++ Sbjct: 605 AKFSRNLVKILREAGQVVN-PALESMAKSASSMGGGNFRSRGRGGFGNR 652 >UniRef50_A0RP33 Putative ATP-dependent RNA helicase RhlE n=2 Tax=Campylobacter fetus RepID=A0RP33_CAMFF Length = 624 Score = 570 bits (1470), Expect = e-161, Method: Composition-based stats. Identities = 171/622 (27%), Positives = 289/622 (46%), Gaps = 8/622 (1%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F+D L + ILEAL +L Y+ P+ IQ IP ++ G+D+L A+TG+GKTAAF+LP+L+ Sbjct: 3 FSDFDLSSAILEALKELNYDAPTQIQQVAIPAIMQGKDILAGARTGTGKTAAFALPILEK 62 Query: 68 LDPELK-----APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 L + + ++LVL PTRELA QV + + ++K + + ++GG Q++AL Sbjct: 63 LSSKERNKKRPQTRVLVLVPTRELANQVTQNIKSYAKKLP-FKTLPVFGGVSSYPQIQAL 121 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 + G IVV TPGRLLD + L L + LV DEAD M MGFI D++ I+ +PE Q Sbjct: 122 KSGIDIVVATPGRLLDLALQNALSLEHIDTLVFDEADRMFDMGFIHDIKQIVKMLPEKRQ 181 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 LFSAT P + + +K+P ++I+ +T +I Q V +K E L Sbjct: 182 NLLFSATYPSEVMSLCNSMLKDPLRIQIEEQNSTALNIIQRVILVDRDKKMELLNEVFGV 241 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 E D A++F RTK + + + L G++ AAL+GD +Q++R +TLE+ K+G+ IL+AT Sbjct: 242 ESIDQALVFTRTKRSADKCSSYLHTLGFSVAALHGDKSQSVRSKTLEKFKNGKTKILVAT 301 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 D+AARGLD++ + V+N ++P E YVHRIGRTGRAG G A+ V E + L +IE+ Sbjct: 302 DIAARGLDIKELPFVINLELPNVPEDYVHRIGRTGRAGNDGVAISLVCVDEFKFLIDIEK 361 Query: 363 TMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLE 422 + + E + + + S D+ + K + D + Sbjct: 362 LIDKKLIRESFSGFEADLRVKPQPIRRGQNMNKSSERDDRNGNKIDKKERKPREFNSDKK 421 Query: 423 TLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRD 482 + + P + K + + +D ++ +R+ + Sbjct: 422 DESKRGRNRDDFKGEFRDRPKKDDKRKFDDKRSKFGFDKDFGTDERETKKDGDFKRKFKK 481 Query: 483 VGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVL 542 + YR + + + + + + D +S + G K + G + Sbjct: 482 DESKREYRRDGVKSEFSKDKKEFSKNSRAKDSNSSFDGEAKREFKFKKDDKKFGEKKKSF 541 Query: 543 QHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERREGGRGDGR 602 +K + + + + + G + + F ++ + G + Sbjct: 542 GDKKSFDDKDKKFSGEKKFSSDKKPRSSDKSSDEKYSGNKFSPKKKFGSDKPDRGDKFTK 601 Query: 603 RFSGERREGRAPRRDDSTGRRR 624 R R R + ++ Sbjct: 602 DAPKPRASSRP--RKPQSDKKS 621 >UniRef50_A7IK90 DEAD/DEAH box helicase domain protein n=36 Tax=Alphaproteobacteria RepID=A7IK90_XANP2 Length = 559 Score = 570 bits (1470), Expect = e-161, Method: Composition-based stats. Identities = 177/522 (33%), Positives = 267/522 (51%), Gaps = 23/522 (4%) Query: 2 AEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFS 61 ++ T+F++LGL PI+ AL + + P+PIQAE IP +L GRD++G+AQTG+GKTAAF+ Sbjct: 33 SQSLTSFSNLGLAEPIVRALTEAQHVTPTPIQAEAIPQILAGRDLIGIAQTGTGKTAAFA 92 Query: 62 LPLLQNL-----DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYD 116 LP+L L PE K+ + LVL+PTREL+ Q+ E F +H ++V GG Sbjct: 93 LPILDRLVRHPHRPEPKSVRALVLSPTRELSGQIVENFEKFGRH-ANISVSLAIGGVPMG 151 Query: 117 VQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQ 176 Q+RAL +G ++V TPGRL+D ++ + L ++ LVLDEAD+ML MGF+ + I+ + Sbjct: 152 RQIRALSRGVDVLVATPGRLIDLVENHAVKLDQVEVLVLDEADQMLDMGFVHAIRAIVRR 211 Query: 177 IPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEAL 236 +P + FSATMP AI + +++P V + T + Q V K + L Sbjct: 212 LPHKRHSLFFSATMPHAIAELAGSMLRDPVRVAVTPVAKTADRVEQRVILVDKANKGQLL 271 Query: 237 VRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRL 296 L ED D A++F RTK+ +V L + G + A++G+ +Q R++ L ++G++ Sbjct: 272 AEVLSTEDIDRALVFSRTKHGADKVVRVLAKAGIAAEAIHGNKSQNQRDRVLAAFREGKI 331 Query: 297 DILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRL 356 LIATD+AARG+DV +S V+N+D+P ESYVHRIGRT RAGR G A+ F ++ ER Sbjct: 332 RTLIATDIAARGIDVTGVSHVINFDLPNVPESYVHRIGRTARAGREGIAISFCDHEERAF 391 Query: 357 LRNIERTMKLTIP---------EVELPNAELL-------GKRRLEKFAAKVQQQLESSDL 400 LR+IE+ +K+ +P +P E + R + +Q Sbjct: 392 LRSIEKLIKMQLPSSDRRGAGTRFAVPELEPIILDERDETSERSDYIGRSGRQNPRGQRP 451 Query: 401 DQYRALLSKIQPTAEGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGP 460 + + A E A A +G P P + P Sbjct: 452 RHGDERSGEGRSRAPRSEEGRPQAARAHQPRGEGRPAGGRPEGRPDAGGAQGAGHRAGQP 511 Query: 461 RDRNDRGPRGDREDRPRRERRDVGDMQLYRIEVGRDDGVEVR 502 RG R +R RP + +G MQ G+ Sbjct: 512 ARAEGRGQRTERGQRPAGDIGGLGFMQSVP-NRGQRSDSRPG 552 >UniRef50_A9GRX1 DeaD2 protein n=5 Tax=Bacteria RepID=A9GRX1_SORC5 Length = 478 Score = 570 bits (1469), Expect = e-161, Method: Composition-based stats. Identities = 165/375 (44%), Positives = 225/375 (60%), Gaps = 5/375 (1%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 FADL L P+L A+ GY P+PIQ + IP +L G D+LG AQTG+GKTAAF+LP+L Sbjct: 1 MQFADLKLIEPLLRAIEAEGYSAPTPIQQQAIPPILEGNDLLGCAQTGTGKTAAFALPIL 60 Query: 66 QNLD----PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 Q L P ++LVL PTRELA QVAE+ T + K++ G+ ++GG Q+ A Sbjct: 61 QRLAQSGGPRQGGLRVLVLTPTRELAAQVAESFTTYGKNL-GLRTAVVFGGVGQRPQMEA 119 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 LR+G ++V TPGRLLD +G +L LVLDEAD ML MGFI D+ ++A +PE Sbjct: 120 LRRGVDVLVATPGRLLDLCSQGIAPFGRLDTLVLDEADRMLDMGFIHDIRRVLAMLPERR 179 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 QT LFSATMP I ++ ++ P V + TT +I Q V K L L+ Sbjct: 180 QTLLFSATMPPDILKLANSILRSPVRVEVARIATTAENIDQRVVFVERSDKRAMLEHVLK 239 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 AI+F RTK+ V + L R + A++G+ +Q RE+ L K G +L+A Sbjct: 240 DPALRRAIVFTRTKHGANRVVQQLSRARIEAVAIHGNKSQGARERALASFKQGTTSVLVA 299 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 TD+AARG+D++ IS V+NYD+P ESYVHRIGRT RAG +G AL F ++ ER L +IE Sbjct: 300 TDIAARGIDIDDISHVINYDLPNIPESYVHRIGRTARAGASGVALSFCDSEERAYLADIE 359 Query: 362 RTMKLTIPEVELPNA 376 R ++ +P + P Sbjct: 360 RLIQKRLPLLADPGV 374 >UniRef50_B7PA03 ATP-dependent helicase (DEAD box), putative n=1 Tax=Ixodes scapularis RepID=B7PA03_IXOSC Length = 685 Score = 570 bits (1469), Expect = e-161, Method: Composition-based stats. Identities = 151/530 (28%), Positives = 225/530 (42%), Gaps = 42/530 (7%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 + TF + ++ + Y P+ IQ++ P L+GRD++G+AQTGSGKT A+ Sbjct: 110 VPRPILTFQEGCFPDYCMKMIETQNYTTPTAIQSQGWPIALSGRDMVGIAQTGSGKTLAY 169 Query: 61 SLPLLQNLDPEL-----KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRY 115 LP + ++ + P LVLAPTRELA Q+ + DF K R + ++GG Sbjct: 170 ILPAIVHITHQPYLQRGDGPMALVLAPTRELAQQIQQVAADFGKASR-IRNTCVFGGAPK 228 Query: 116 DVQLRA-------------------------LRQGPQIVVGTPGRLLDHLKRGTLDLSKL 150 QLR R G +I + TPGRL+D L+ G ++L + Sbjct: 229 GSQLRDWREFGALCPASVAVVQRNSQVIVVICRAGVEICIATPGRLIDFLEAGKVNLRRC 288 Query: 151 SGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRI 210 + LVLDEAD ML MGF + I+ QI QT ++SAT P+ +R + F+K+ +V I Sbjct: 289 TYLVLDEADRMLDMGFEPQIRKIVEQIRPDCQTLMWSATWPKEVRSLAEDFLKDYIQVNI 348 Query: 211 QS-SVTTRPDISQSYWTVWGMRKNEALVRF---LEAEDFDAAIIFVRTKNATLEVAEALE 266 + + I Q K L+ + E + +IF TK E+ + Sbjct: 349 GALQLCANHRIVQIVDVCQESDKENKLMELHKEIINEQDNKTLIFAETKKKVDELTRRMR 408 Query: 267 RNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDS 326 RNG+ S ++GD +Q+ R+ L + GR IL+ATDVAARGLDV+ I V+NYD P S Sbjct: 409 RNGWPSICIHGDKSQSERDWVLNEFRSGRSPILVATDVAARGLDVDDIRFVINYDYPHCS 468 Query: 327 ESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEK 386 E Y+HRIGRT R+ + G A F + + + +K + E+ R Sbjct: 469 EDYIHRIGRTARSNKTGTAYTFFTPGNMKQAKELIAVLKEANQAINPKLFEIANMARNNS 528 Query: 387 FAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAALLKMAQGERTLIVPPDAPM 446 + S L Y+ L P + Q PP M Sbjct: 529 YGG----GRNSESLPPYKLLQE---PWGRESMQGTGPPSYQRSPAPQNGYGGPKPPQNGM 581 Query: 447 RPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDMQLYRIEVGRD 496 + G + G + + Y G Sbjct: 582 GGAQMGGALGTMGGAMAANGGGYKPPQRPSPPASSAMHHAPQYAAAGGYR 631 >UniRef50_Q3AFI3 ATP-dependent RNA helicase, DEAD box family n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AFI3_CARHZ Length = 430 Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats. Identities = 185/429 (43%), Positives = 270/429 (62%), Gaps = 2/429 (0%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F LGL P+L+A+NDLG+E P+PIQ E IP +L G +++G A TG+GKTAA+ LP+LQ Sbjct: 4 FKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQR 63 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 + KA Q+L++ PTRELA+QVA+ + K+++ V +A+YGGQ + Q+R LRQG + Sbjct: 64 IQRGKKA-QVLIVTPTRELALQVADEVAKLGKYLK-VRALAVYGGQAIERQIRGLRQGVE 121 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 ++VGTPGR+LDH+ R T +++ ++LDEADEML MGFI+D+E I+ + QT LFS Sbjct: 122 VIVGTPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQTLLFS 181 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 AT+P I+ I ++F+ + V++ T P I Q Y+ + K E LV L +E Sbjct: 182 ATLPAPIKTIIKKFLGGYKTVKLVGREKTVPAIRQVYYELPETEKIEGLVSILNSELPIQ 241 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 AI+F RTK EV E L GY + L+GDM+Q R QT++ K G+ ++L+ATDVAAR Sbjct: 242 AIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVATDVAAR 301 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 GLD+ +S V+N+DIP + ESY+HRIGRTGRAGR G+A+ + RER+LL+ IE + Sbjct: 302 GLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRERKLLKAIEEAINKR 361 Query: 368 IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAA 427 + LP L + R +K A K+ + Y + +++ E E+L TL Sbjct: 362 LKREILPEPVDLEEARFKKIAKKILDTITKGVPALYLEMAARLLEEEESEQLLGATLYLL 421 Query: 428 LLKMAQGER 436 + Q + Sbjct: 422 EDRSLQNDF 430 >UniRef50_C8WFI7 DEAD/DEAH box helicase domain protein n=3 Tax=Zymomonas mobilis RepID=C8WFI7_ZYMMN Length = 506 Score = 568 bits (1465), Expect = e-160, Method: Composition-based stats. Identities = 169/449 (37%), Positives = 247/449 (55%), Gaps = 4/449 (0%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 +FADLGL +L+A+ +LGYE+P+P+QA IP +L RD++ +AQTG+GKTA+F LP++ Sbjct: 15 MSFADLGLSKELLQAVAELGYEEPTPVQAAAIPSVLMMRDLIAVAQTGTGKTASFVLPMI 74 Query: 66 QNLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 L + P+ L+L PTRELA QVAE + K+ +++ L GG Q AL Sbjct: 75 DILAHGRCRARMPRSLILEPTRELAAQVAENFEKYGKY-HKLSMSLLIGGVPMAEQQAAL 133 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 +G +++ TPGRLLD +RG + LS LV+DEAD ML MGFI D+ETI ++P Q Sbjct: 134 EKGVDVLIATPGRLLDLFERGKILLSSCEMLVIDEADRMLDMGFIPDIETICTKLPTSRQ 193 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 T LFSATMP AI+++ RF+ P+++ I T I Q V K + L L A Sbjct: 194 TLLFSATMPPAIKKLADRFLSNPKQIEISRPATANTLIDQRLIEVSPRSKKKKLCDMLRA 253 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 E AIIF K ++A LE+ G++ ++GDM+Q R LER K+G++ +L+A+ Sbjct: 254 EKDHTAIIFCNRKTTVRQLATTLEQQGFSVGQIHGDMSQPERGSELERFKNGQISVLVAS 313 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 D+AARGLDV+ IS V N+D+P + Y+HRIGRTGR G +G AL FV + + IE+ Sbjct: 314 DIAARGLDVKGISHVFNFDVPTHPDDYIHRIGRTGRGGASGEALTFVTPADEEAITAIEK 373 Query: 363 TMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLE 422 M + IP + + E + K + ++ + T + D Sbjct: 374 LMGVEIPRLGNRKKNAYPSKSEETVSPKQAKPVQEKSAASSPRKAPRKTETPKKLPEDRL 433 Query: 423 TLAAALLKMAQGERTLIVPPDAPMRPKRE 451 + Q R P + R + Sbjct: 434 DSVESDFPKNQAPRNTASRPVSKARTQER 462 >UniRef50_C9RPH4 DEAD/DEAH box helicase domain protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RPH4_FIBSS Length = 486 Score = 568 bits (1465), Expect = e-160, Method: Composition-based stats. Identities = 158/487 (32%), Positives = 254/487 (52%), Gaps = 8/487 (1%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 F +L L P+ A+ +GYE P+PIQ IP LL G+D+LG+AQTG+GKTAAF+LP+L Sbjct: 1 MKFEELPLANPLQRAVRAVGYETPTPIQERSIPSLLEGKDLLGIAQTGTGKTAAFALPIL 60 Query: 66 QNLD-----PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 Q L K + L+L PTRELA+QV + ++++ ++ ++GG + Q + Sbjct: 61 QRLLDSGKFRSPKTCRALILLPTRELAIQVEDCFREYAQFTA-ISTACIFGGVNDNPQKQ 119 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 L +G ++V TPGRLLD + + + L KL VLDEAD ML MGFI D+ ++A +P+ Sbjct: 120 KLIRGVDVLVATPGRLLDLIGQKAISLKKLEFFVLDEADRMLDMGFIHDIRKVVAMLPQD 179 Query: 181 HQTALFSATMPEAIRRITRRFMK-EPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239 Q FSATMPE I ++ ++ P V + T I Q + + RK L Sbjct: 180 RQNLFFSATMPEEISKLAATILRPNPVRVEVAPQSTPIERIRQELYRIDKRRKGALLKEL 239 Query: 240 LEAE-DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDI 298 L + ++F RTK+ ++ LE+ G AA++G+ +Q R++ L K ++ + Sbjct: 240 LAEHPEMKKVLVFCRTKHGADKIVRVLEKAGIKCAAIHGNKSQNRRQEALGNFKCEQIRV 299 Query: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLR 358 L+ATD+AARG+DV+ +S V NYD+P + E++VHRIGRT RAG+ G A+ F E LR Sbjct: 300 LVATDIAARGIDVDDVSHVFNYDLPNEHETFVHRIGRTARAGKEGVAISFCSPDEESDLR 359 Query: 359 NIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEE 418 IE+ ++ IPE + E L + E + ++ ++ +A ++ + + Sbjct: 360 GIEKLTRVKIPEGDQSIYENLPPPQKETAESMMRNSRGRMSREEAQARAAETRNNRGNRK 419 Query: 419 LDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRR 478 + + + + + ++ + + R+ R G R R R Sbjct: 420 GNHGKQNSNNAPHNSEQISRNPAQNVTVQNAPADNTPNPQNGGRRHRRNRPGSRARRRMR 479 Query: 479 ERRDVGD 485 E + Sbjct: 480 ESQSQQQ 486 >UniRef50_Q5JKF2 DEAD-box ATP-dependent RNA helicase 40 n=11 Tax=Viridiplantae RepID=RH40_ORYSJ Length = 792 Score = 568 bits (1464), Expect = e-160, Method: Composition-based stats. Identities = 169/635 (26%), Positives = 257/635 (40%), Gaps = 11/635 (1%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 + T+F G IL+ + G+ P+PIQA+ P L +DV+ +A+TGSGKT + Sbjct: 145 VPAPITSFETGGFPPEILKEIQRAGFSSPTPIQAQSWPIALQCQDVVAIAKTGSGKTLGY 204 Query: 61 SLPLLQNLDP----ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYD 116 LP ++ P +LVLAPTRELA Q+ E F + R ++ LYGG Sbjct: 205 LLPGFMHIKRLQNNPRSGPTVLVLAPTRELATQILEEAVKFGRSSR-ISSTCLYGGAPKG 263 Query: 117 VQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQ 176 QLR L +G +VV TPGRL D L+ + L ++S LVLDEAD ML MGF + I+ + Sbjct: 264 PQLRDLDRGVDVVVATPGRLNDILEMRRISLKQVSYLVLDEADRMLDMGFEPQIRKIVKE 323 Query: 177 IPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQS--SVTTRPDISQSYWTVWGMRKNE 234 IP QT +++AT P+ +RRI + P +V I S + I+Q+ + K Sbjct: 324 IPPRRQTLMYTATWPKEVRRIAEDLLVHPVQVTIGSVDELVANSAITQNVELITPSEKLR 383 Query: 235 ALVRFLEAEDFD-AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKD 293 L + L ++D +IF TK ++A L R + ++A++GD +Q+ RE+ L + Sbjct: 384 RLEQILRSQDSGSKVLIFCTTKRMCDQLARTLTRQ-FGASAIHGDKSQSEREKVLSHFRS 442 Query: 294 GRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRE 353 GR IL+ATDVAARGLD++ I +V+NYD P E YVHRIGRTGRAG G A F +++ Sbjct: 443 GRSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVAYTFFCDQD 502 Query: 354 RRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPT 413 + ++ + ++ V + + R + + S + L S+ Sbjct: 503 SKYAADLIKILEGANQRVP-RDLADMASRGGRGGRKRNRWATRSDRGGSHSELDSRYGGR 561 Query: 414 AEGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDRE 473 ++ + R + R DR R Sbjct: 562 DGLSGSSGRLDSSRSSRRHDYGDDGRSRRSGRGRSRSRSRSDSDRYSRSPKRSRRHSRSR 621 Query: 474 DRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIEL 533 R R R + R R A + G+ + + Sbjct: 622 TRSRSRSRSRSYTRNRRASRSRSRSPGASRRHERSATGSGSALPDSGHGE-RKRTPEADP 680 Query: 534 PKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGER 593 + R K + L P R N Sbjct: 681 SRNHTNHSDPKDDRHPEDGKVGKVDLDRSPTPQDKSGPYSPAYNGKTSRSVSPGNQVEGN 740 Query: 594 REGGRGDGRRFSGERREGRAPRRDDSTGRRRFGGD 628 + R D+ G G+ Sbjct: 741 NKAAEVSKNPDPSSPPHHGKTREDEEEGMIDEDGE 775 >UniRef50_Q17W71 ATP-dependent RNA helicase n=19 Tax=Helicobacter RepID=Q17W71_HELAH Length = 494 Score = 567 bits (1463), Expect = e-160, Method: Composition-based stats. Identities = 162/480 (33%), Positives = 257/480 (53%), Gaps = 7/480 (1%) Query: 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 + +F DLGLK +L+++ + G+ PSPIQ + IP +L GRDV+ AQTG+GKTAAF+LP+ Sbjct: 21 KPSFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPI 80 Query: 65 LQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 + NL + LV+ PTRELA+Q+++ + KH + V +YGGQ Q +++ Sbjct: 81 INNL-KNNHTIEALVITPTRELAMQISDEIFKLGKHTKT-KTVCVYGGQSVKKQCEFIKK 138 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 PQ+++ TPGRLLDHLK + +VLDE+DEML MGF++D+E I +P Q Sbjct: 139 NPQVMIATPGRLLDHLKNDRIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQIL 198 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 LFSATMPE I+++ + ++ P ++ I S T DI+Q ++ + ++EA++ L+ + Sbjct: 199 LFSATMPEPIKKLADKILENPIKIHIAPSNITNTDITQRFYVINEHERSEAIMHLLDTQA 258 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 + +I+F RTK E+ + L Y S AL+GDM+Q R ++ K D+L+ATDV Sbjct: 259 PEKSIVFTRTKKEADELHQFLISKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDV 318 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 A+RGLD+ +S V NY +P+++ESY+HRIGRTGRAG+ G A+ V E + L +++ + Sbjct: 319 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 378 Query: 365 KLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETL 424 I E+P + ++ + Y L +P+ +L Sbjct: 379 DSEIELFEIPTINENQIIKTLH-----GAKVSEGVISLYEQLTEIFEPSQLILKLLSLQF 433 Query: 425 AAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVG 484 + + Q E I P + + R R ++ Sbjct: 434 ETNKIGLNQQEIDAIQNPKERVPKPPHKKTHKTEQAHSFKKSRHRDKYPKTNRYSKKPKR 493 >UniRef50_A6TTG0 DEAD/DEAH box helicase domain protein n=28 Tax=Firmicutes RepID=A6TTG0_ALKMQ Length = 549 Score = 566 bits (1460), Expect = e-160, Method: Composition-based stats. Identities = 186/522 (35%), Positives = 278/522 (53%), Gaps = 5/522 (0%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 + FA LG+ I LN +P+P+Q + IP LL RDV+ AQTG+GKT AF LP Sbjct: 1 MKNKFAKLGISEEIENVLNKSDITEPTPVQLQAIPPLLAQRDVMAQAQTGTGKTLAFILP 60 Query: 64 LLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 +L+ ++ E Q L++ PTRELA+Q+ ++ ++G+N++A YGGQ + QLR L+ Sbjct: 61 ILERVNVEKPTIQALIITPTRELAIQITAETKKLAE-VKGINILAAYGGQDVEQQLRKLK 119 Query: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183 I++GTPGRLLDHL+R T++L KLS LVLDEAD+ML MGF+ DVE IM IP+ Q Sbjct: 120 GSIHIIIGTPGRLLDHLRRKTINLGKLSMLVLDEADQMLHMGFLRDVEDIMTHIPKRRQN 179 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAE 243 FSATMP +R + ++MK+P ++++QS T +I Q K + L + + Sbjct: 180 MFFSATMPNQVRTLAEQYMKDPVQIQVQSKRVTLDEIRQVVIETTDRGKQDLLCQLFDEY 239 Query: 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 303 + AIIF RTK + + EAL GYNS L+GD+ QA RE+ ++ K ++ L+ATD Sbjct: 240 NPFMAIIFCRTKRRAIALNEALINLGYNSDELHGDLTQAKREKVMKAFKKSKIQYLVATD 299 Query: 304 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 363 VAARGLD+E ++ + NYDIP D ESY+HRIGRTGRAG G A+ F+ +R+R L+ IE+ Sbjct: 300 VAARGLDIEGVTHIFNYDIPQDGESYIHRIGRTGRAGETGMAITFMTSRDRDELKIIEKV 359 Query: 364 MKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLET 423 +K+ + + + ++ + + + D + + ++ Sbjct: 360 IKMDLDVQKSKSGKIDLDEEEQDTKKSPKGRGNDKSKDFKKGKYGDKKGKPGDKKGRPGD 419 Query: 424 LA-AALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRD 482 K + P D RP + D R +++G GD + RP + Sbjct: 420 KRDRPTDKKGRPGDKRDRPSDNKGRPGDKRDRPSDNKGRPGDNKGRPGDNKGRPGDNKGR 479 Query: 483 VGDMQ-LYRIEVGR--DDGVEVRHIVGAIANEGDISSRYIGN 521 GD + GR D+ G + G Sbjct: 480 PGDNKGRPGDNKGRPGDNKGRPGDNKGRPGDNKGRPGDNKGR 521 >UniRef50_C1D673 RhlE3 n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D673_LARHH Length = 582 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 166/489 (33%), Positives = 248/489 (50%), Gaps = 8/489 (1%) Query: 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64 +FADL L P+L A+ + GY +P+PIQ E I +L GRD++ AQTG+GKTA F+LPL Sbjct: 3 SISFADLQLVDPLLRAITEAGYTEPTPIQREAIAPVLAGRDLMAAAQTGTGKTAGFALPL 62 Query: 65 LQNLDP------ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQ 118 LQ L P+ LVL PTRELA QV E++ H+ + + ++GG R Q Sbjct: 63 LQRLAATHPHPHPAGRPRGLVLTPTRELAAQVGESIATLGTHLP-LTSLVIFGGVRVKPQ 121 Query: 119 LRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP 178 + AL Q I++ TPGRL+D K+ +DLS + LVLDEAD ML MGFI DV ++ +P Sbjct: 122 IEALTQRVDILIATPGRLIDLAKQEAVDLSGVEILVLDEADRMLDMGFIRDVRKVLKLLP 181 Query: 179 EGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVR 238 Q LFSAT + I+ + F+ +PQ V + +T ++ V RK E L Sbjct: 182 AERQNLLFSATFNDDIKALADTFLHDPQLVEVSPPNSTTELVTHHVHLVDRNRKRELLTH 241 Query: 239 FLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDI 298 +E+ + ++F RTK+ +AE L + G +AA++G+ +Q R + L KDG L + Sbjct: 242 LVESRQWQQVLVFTRTKHGANRLAEVLAKGGIPAAAIHGNKSQGARTRALSEFKDGSLRV 301 Query: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLR 358 L+ATD+AARG+D+ + VVNY++P E YVHRIGRTGRAG G A+ V E +LL Sbjct: 302 LVATDIAARGIDISELPQVVNYELPNVPEDYVHRIGRTGRAGSPGEAVSLVCVDELKLLA 361 Query: 359 NIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEE 418 +IE + IP+ P E + + Q D + + + + Sbjct: 362 DIEAFIGRPIPQFTEPGFEADLSVPPQPLLP-PRHQQGRQDGEGGEPRGQRNKKKPHNKP 420 Query: 419 LDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRR 478 + + + P P++ P + R ++ RP+ Sbjct: 421 ARRADAPTLPMDAPEHDSGAPAPVAEAQPPRQRKPAPGQPNPAGKPQGAARDGKKPRPQN 480 Query: 479 ERRDVGDMQ 487 ++ Sbjct: 481 QQNKKSGQP 489 >UniRef50_Q9SQV1 DEAD-box ATP-dependent RNA helicase 40 n=14 Tax=Eukaryota RepID=RH40_ARATH Length = 1088 Score = 565 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 141/389 (36%), Positives = 209/389 (53%), Gaps = 10/389 (2%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 + TF GL IL L G+ P+PIQA+ P L RD++ +A+TGSGKT + Sbjct: 430 IPAPYITFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGY 489 Query: 61 SLPLLQNL----DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYD 116 +P L + P +L+LAPTRELA Q+ + F + R ++ LYGG Sbjct: 490 LIPAFILLRHCRNDSRNGPTVLILAPTRELATQIQDEALRFGRSSR-ISCTCLYGGAPKG 548 Query: 117 VQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQ 176 QL+ L +G IVV TPGRL D L+ +D ++S LVLDEAD ML MGF + I+ + Sbjct: 549 PQLKELERGADIVVATPGRLNDILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNE 608 Query: 177 IPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQS--SVTTRPDISQSYWTVWGMRKNE 234 IP QT +++AT P+ +R+I + P +V I + I+Q V M K Sbjct: 609 IPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGRVDELAANKAITQYVEVVPQMEKER 668 Query: 235 ALVRFLEAEDFD-AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKD 293 L + L +++ IIF TK +A ++ R+ + + ++GD Q R+ L + + Sbjct: 669 RLEQILRSQERGSKVIIFCSTKRLCDHLARSVGRH-FGAVVIHGDKTQGERDWVLNQFRS 727 Query: 294 GRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRE 353 G+ +LIATDVAARGLD++ I +V+NYD P E YVHRIGRTGRAG G A F ++ Sbjct: 728 GKSCVLIATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFFTEQD 787 Query: 354 RRLLRNIERTMKLTIPEVELPNAELLGKR 382 + ++ + ++ +V P + R Sbjct: 788 WKYAPDLIKVLEGANQQVP-PQVRDIAMR 815 >UniRef50_C5TNR4 Dead/deah box helicase n=8 Tax=Neisseriaceae RepID=C5TNR4_NEIFL Length = 487 Score = 565 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 165/456 (36%), Positives = 247/456 (54%), Gaps = 17/456 (3%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F+ LGL + ++ AL D GYE P+PIQA IP L G D+L AQTG+GKTAAF LP L+ Sbjct: 28 FSSLGLGSELVSALTDQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLEL 87 Query: 68 LD--------PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119 L P + ++LVL PTRELA Q+ + + + K++ + L+GG D Q Sbjct: 88 LKRYATSSTSPAMHPVRMLVLTPTRELADQIDQNVQAYIKNLP-LRHTVLFGGVNMDKQT 146 Query: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179 LR G +IVV T GRLLDH+K+ ++L+K+ +VLDEAD ML MGFI+D+ IM +P+ Sbjct: 147 ADLRAGCEIVVATVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPK 206 Query: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239 QT LFSAT IR++ + FM P+ V + + TT ++ Q V ++K L R Sbjct: 207 QRQTLLFSATFSPPIRKLAQDFMHTPEMVEVAAQNTTNANVEQHIIAVDALKKRSLLERL 266 Query: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299 + + I+F +TK + +V L R + +++GD +Q R +TL K+G L +L Sbjct: 267 IVDLHMNQVIVFCKTKQSVDQVTRDLVRRNIAAQSIHGDKSQQSRLETLNAFKEGTLRVL 326 Query: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359 +ATDVAARGLD+ + V+NY++P E YVHRIGRTGRAG G A+ ++ E+++ Sbjct: 327 VATDVAARGLDIAELPFVINYELPTQPEDYVHRIGRTGRAGADGVAISLMDKTEQKMFEA 386 Query: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEL 419 I+ + + E + A+ Q ++ +D R +K A + Sbjct: 387 IKELTGSDLNVERIEGFEPHWWDNDNQNEAEAQ-PVQHNDSRSRRDDRNKRNEYANKSDK 445 Query: 420 DLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDR 455 + + K + IV R +R +R Sbjct: 446 NSK-------KAEEKNDPGIVCGKIAGRTRRSRHER 474 >UniRef50_C6XMJ7 DEAD/DEAH box helicase domain protein n=23 Tax=Bacteria RepID=C6XMJ7_HIRBI Length = 769 Score = 564 bits (1455), Expect = e-159, Method: Composition-based stats. Identities = 214/669 (31%), Positives = 312/669 (46%), Gaps = 48/669 (7%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 T F+D L +P+L+AL+ GYE P+PIQA+ IP ++ G D+LG+AQTG+GKTAAF+LPLL Sbjct: 2 TKFSDFDLASPVLKALDKEGYETPTPIQAQAIPLVMEGGDILGIAQTGTGKTAAFALPLL 61 Query: 66 QNL-----DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 +L P A + LV+APTRELA Q+AEA + + + + V+ ++GG Q+R Sbjct: 62 HHLCKLPDMPGPGAVRCLVIAPTRELASQIAEAFSKYGQ-CLSLRVLKVFGGVPIRKQMR 120 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 L +G ++V TPGRL+D +++G +DLS + LVLDEAD+ML +GFI + I A +P+ Sbjct: 121 DLHRGADVLVATPGRLIDLMEQGAVDLSYVEKLVLDEADQMLDLGFIHPLRRIAAAVPKE 180 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 QT FSATMP + + +F+ P++V I TT ++Q+ V +K L+ L Sbjct: 181 RQTLFFSATMPSNVSGLANQFLTNPKKVSIAQESTTAERVTQTMSHVNQAQKGPLLLVNL 240 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 + E D A++F RTK+ +V L G A++G+ +QA RE+ L ++G +L+ Sbjct: 241 QDESIDRALVFTRTKHGADKVVSKLMNAGIRCGAIHGNKSQAQRERALNAFRNGDSKVLV 300 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATD+AARG+DV +S V NY+IP E YVHRIGRT RAGR G+A+ FV E++ L +I Sbjct: 301 ATDIAARGIDVPGVSHVFNYEIPNVPEQYVHRIGRTARAGREGKAISFVSRDEKKYLLDI 360 Query: 361 ERTMKLTIPEVELPNA----------------ELLGKRRLEKFAAKVQQQLESSDLDQYR 404 +R +++ IP V+LP E + R + A+ + D R Sbjct: 361 QRQIRMKIPIVDLPEGFIDQAEEITANATPVIEERPRGRGGRDGARGGRDGGRGGRDGGR 420 Query: 405 ALLSKIQPTAEGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRD-- 462 + +G E +G D P R +R FR PR Sbjct: 421 GGRDGGRGGRDGGRGRSEGRGGRDGGGYKGRDDRPQREDRPQREERPFRAEASSEPRYEG 480 Query: 463 RNDRGPRGDREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIG-- 520 R DR R + +R R RD + R E R +G G R G Sbjct: 481 RQDRFKRSEGGERQERPNRDDRFARRERPEGERSEGRSEGRRDNRSEGRGGYQGRREGGR 540 Query: 521 -------NIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPM----------NMQLLGDA 563 + E + R + G Sbjct: 541 EEGRGGYQGRSEGGRGEGRGGYQGRTEGGRGEGRGGYQGHSEGGRNEGRGGYQGRREGGR 600 Query: 564 QPHTGGER-RGGGRGFGGERREGGRNFSGERREGGRGDGRRF----SGERREGRAPRRDD 618 + GG + R GG R E R + R +GR+ D Sbjct: 601 DENRGGYQGRDGGDRRPPNRDERMAGERPPSRGYEGSNPRPRTNYDKTRAADGRSWGNDR 660 Query: 619 STGRRRFGG 627 G R GG Sbjct: 661 KEGGRSEGG 669 >UniRef50_B8I5B1 DEAD/DEAH box helicase domain protein n=2 Tax=Clostridium RepID=B8I5B1_CLOCE Length = 542 Score = 564 bits (1454), Expect = e-159, Method: Composition-based stats. Identities = 179/487 (36%), Positives = 265/487 (54%), Gaps = 9/487 (1%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 TF +LG+ APIL+A++D+G++ P+ +Q++ IPH+LN D++ M++TGSGKTA F + Sbjct: 1 MNNTFNELGISAPILKAIDDMGFKTPTEVQSKAIPHILNNEDLIVMSKTGSGKTAVFGVS 60 Query: 64 LLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 +LQ +PE PQ L+L P RELAVQV + +K+++ A+YG +++ + L Sbjct: 61 ILQLTNPEEAGPQGLILTPARELAVQVDNDIRKMAKYLKH-KTTAIYGQHNINLETQILN 119 Query: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183 +G IV GTPGR+ DH+ GTL + LVLDEAD ML MGF++ V I+ +P+ T Sbjct: 120 KGVSIVTGTPGRVFDHISHGTLSTKNIRFLVLDEADRMLDMGFLDQVVRIVKTLPKERIT 179 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAE 243 LFSATMP I I +R+M P + I+S T I Q Y+ V KN L R L E Sbjct: 180 LLFSATMPPEIHNICKRYMNNPVTIEIESQTKTVDTIHQVYYRVNYNEKNTQLNRLLIVE 239 Query: 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 303 ++ +IF TK A V L + GY+S AL+GD+ Q+ R T+++ K G+ IL+ATD Sbjct: 240 KPESCMIFCNTKAAVDRVQSFLGKKGYSSRALHGDIPQSKRLNTIQQFKQGKFHILVATD 299 Query: 304 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 363 VAARG+ +E +SLV+NYD+P D ++YVHRIGRTGRAG GRA V + L IE Sbjct: 300 VAARGIHIEDLSLVINYDVPNDKDNYVHRIGRTGRAGHEGRAFSLVTGDDIISLYEIEEH 359 Query: 364 MKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLET 423 + I E ELP+ E K R E Q ++++ L + + + + + Sbjct: 360 IGTLILEEELPDEEAFTKAREEA-----AQWIKANSLKEKAPRSASADSSVKQKRTGQ-- 412 Query: 424 LAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDV 483 + ++ G PD R + + R R ++ D++ Sbjct: 413 -NSKSNRIPNGRPEYSKRPDGQSRHTGKSASSEQRSERIKSVNTVHSDKQPGRTPVTPIR 471 Query: 484 GDMQLYR 490 R Sbjct: 472 TAKPPIR 478 >UniRef50_B5EAF1 DEAD/DEAH box helicase domain protein n=3 Tax=Deltaproteobacteria RepID=B5EAF1_GEOBB Length = 471 Score = 564 bits (1454), Expect = e-159, Method: Composition-based stats. Identities = 160/471 (33%), Positives = 240/471 (50%), Gaps = 3/471 (0%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F L + + +GY P+PIQ + IP +++G+DVLG+AQTG+GKTAAF LP+L Sbjct: 3 FKQFNLHPKVQAGIEAMGYVTPTPIQLQAIPSVISGQDVLGLAQTGTGKTAAFGLPMLHR 62 Query: 68 LDPELKA-PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 L E + + LVLAPTRELA Q+ +A+ K R + V +YGG + Q++ L++G Sbjct: 63 LVQEERGHVRGLVLAPTRELAEQINDALNGMGKQTR-LRSVTVYGGVNINTQIKKLKEGA 121 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 +IVV PGRLLDH+ +GT+DLS++ LVLDEAD+M MGF+ DV I+ +P Q +F Sbjct: 122 EIVVACPGRLLDHISQGTIDLSRVEILVLDEADQMFDMGFLPDVRKILRALPGKRQNLMF 181 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SATMP+ IRR+ ++ P V++ S +S + + V K L L+ D + Sbjct: 182 SATMPDDIRRLAHEILRNPVTVQV-SRTAPAATVSHALYPVGQHLKTPLLFEMLKHTDTE 240 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 + +IF +TK+ V E LE+ GY + +L G+++Q R+ L+ +DG I++ATD+AA Sbjct: 241 SVLIFTKTKHRAKRVGEQLEKAGYKATSLQGNLSQNRRQAALDGFRDGTFQIMVATDIAA 300 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RG+DV IS V+NYDIP E+Y HRIGRTGRA + G A V + + +R+IE+ + Sbjct: 301 RGIDVSLISHVINYDIPDTPEAYTHRIGRTGRAAKTGDAFTMVTSEDDYTVRSIEKVLGT 360 Query: 367 TIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAA 426 I + + + + D + + + A Sbjct: 361 KIERRRIEGFDYAVPAPQKDTEFARPPREPQRRRDGAKPGAGRPAAAGPAGAKPASAVGA 420 Query: 427 ALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPR 477 A G D +R R Sbjct: 421 KGNAAASGRPAAHGSKDGSADGGHASGPAGKHRQHPGGNRPANHAARRSGR 471 >UniRef50_UPI00006CD03A P68-like protein, putative n=1 Tax=Tetrahymena thermophila RepID=UPI00006CD03A Length = 699 Score = 564 bits (1454), Expect = e-159, Method: Composition-based stats. Identities = 148/503 (29%), Positives = 232/503 (46%), Gaps = 29/503 (5%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAE-------------------CIPHLL 41 + + + + I+ + D + +P PIQA+ P +L Sbjct: 189 VPQPFIKWNETKFPKYIMSVIEDSKFSEPMPIQAQYVTNKKQKKKYKMYECSFIPFPIVL 248 Query: 42 NGRDVLGMAQTGSGKTAAFSLPLLQNLDPEL-----KAPQILVLAPTRELAVQVAEAMTD 96 +G D++G+AQTGSGKT +F LP L +++ + + P LVLAPTRELA Q+ E Sbjct: 249 SGHDLIGIAQTGSGKTLSFMLPALVHINAQDPVKPGEGPIALVLAPTRELANQIQEQCFK 308 Query: 97 FSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLD 156 F + ++ V +YGG Q + LR G IV+ TPGRL+D L+ +DL +++ LVLD Sbjct: 309 FGSKCK-ISSVCVYGGAPKIYQEKELRNGCDIVIATPGRLIDFLESNVIDLKRVTYLVLD 367 Query: 157 EADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMK-EPQEVRIQS-SV 214 EAD ML MGF + I+ QI QT +FSAT P+ +RR+ F +P ++I Sbjct: 368 EADRMLDMGFEPSIRKIVGQIRPDRQTLMFSATWPQTVRRLALDFCHGDPIHIQIGDMEN 427 Query: 215 TTRPDISQSYWTVWGMRKNEALVRFLEAEDF-DAAIIFVRTKNATLEVAEALERNGYNSA 273 DI Q + +K + + L D IIF +TK ++++AL+ + + Sbjct: 428 NVNNDIDQQVEIIDKSQKYDRVKEILSTMTRSDKTIIFTQTKKDCDDLSKALQTDNIRNI 487 Query: 274 ALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRI 333 ++GD +Q R++ ++ K GR++ LIATDVA+RGLDV+ I LV+NYD P E YVHR+ Sbjct: 488 CIHGDKSQRDRDKVMDLFKTGRVNTLIATDVASRGLDVKDIKLVINYDFPKQIEDYVHRV 547 Query: 334 GRTGRAGRAGRALLFVENRERRLL-RNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQ 392 GRTGRAG G+A+ F++ E + + + + +K E+ EL ++ Sbjct: 548 GRTGRAGAQGKAISFLDQYEDKKISKELVDVLKQNNQEISQDLLELSEANYKGNYSNNYN 607 Query: 393 QQLESSDLDQYRALLSKIQPTAEGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREF 452 + S + G + Sbjct: 608 KNRSSKPYSGGYNNNRNYYGNNNEMGFRNSNNGFSNNGYQNGNSNGGYRSQQNNNGFQNN 667 Query: 453 RDRDDRGPRDRNDRGPRGDREDR 475 D R + G + Sbjct: 668 NYNRDFPKRQEDGNGGSEQPKKF 690 >UniRef50_B8ILJ8 DEAD/DEAH box helicase domain protein n=10 Tax=Alphaproteobacteria RepID=B8ILJ8_METNO Length = 506 Score = 563 bits (1453), Expect = e-159, Method: Composition-based stats. Identities = 175/509 (34%), Positives = 262/509 (51%), Gaps = 13/509 (2%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 T F D GL API++AL + GY P+PIQA+ +P + GRD+ G+AQTG+GKTAAF+LP+L Sbjct: 2 TQFVDFGLAAPIMKALAETGYVTPTPIQAQAVPPAMTGRDLCGIAQTGTGKTAAFALPIL 61 Query: 66 QNLDPE-------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQ 118 L E + ++LVL+PTRELA Q+A++ D+ K + + ++GG Q Sbjct: 62 HRLASETPAKRAPRRGCRVLVLSPTRELASQIADSFRDYGKFLP-FSTTVVFGGVTIGRQ 120 Query: 119 LRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP 178 RAL G ++V TPGRLLD + R +L L + LVLDEAD+ML +GFI ++ I+ +P Sbjct: 121 ERALANGIDVLVATPGRLLDLVDRRSLSLDSVEYLVLDEADQMLDLGFIHALKRIVTLLP 180 Query: 179 EGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVR 238 + Q+ FSATMP+ I + +++++P +V + TT + Q V K L Sbjct: 181 KARQSLFFSATMPKNIATLAAQYLRDPVQVAVTPVATTAERVEQRVIHVSTGAKQALLGT 240 Query: 239 FLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDI 298 L E D ++F RTK+ V LE+ G SAA++G+ +Q RE+ L + G + Sbjct: 241 ILRDESIDRVLVFTRTKHGADRVVRGLEKVGIGSAAIHGNKSQPQRERALAAFRAGTCRV 300 Query: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLR 358 L+ATD+AARG+DVE ++ VVN+D+P E+YVHRIGRT RAG G A+ F ER LR Sbjct: 301 LVATDIAARGIDVEGVTHVVNFDLPNVPEAYVHRIGRTARAGADGLAISFCNEEERAYLR 360 Query: 359 NIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEE 418 +IER + +PE+ +P + R+ A ++ + + +G Sbjct: 361 DIERLTRQKVPEMAIPVGFVPPSRQEAAEAVAEAERDRRQPGPRGQRPGRSHGARPQGGP 420 Query: 419 LDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRR 478 + + P + R R D P GP+G + + Sbjct: 421 GGRPQGGRQHGQGGRPGEGRPRDGGRPAQEARPGRPAQDGRPAAHRAEGPKGHGRPQGQP 480 Query: 479 ERRDVGDMQLYRIEVGRDDGVEVRHIVGA 507 R G DG + + A Sbjct: 481 HRDRGRAPAQ-----GGQDGRAIGWLDRA 504 >UniRef50_B3L9V8 Helicase, putative n=6 Tax=Alveolata RepID=B3L9V8_PLAKH Length = 528 Score = 563 bits (1452), Expect = e-159, Method: Composition-based stats. Identities = 140/389 (35%), Positives = 212/389 (54%), Gaps = 11/389 (2%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 + + + +G +L++L + P+PIQ + P L+G+D++G A+TGSGKT AF Sbjct: 108 VPNPVESISKIGFPDYVLKSLKNNNIVTPTPIQIQGWPIALSGKDMIGKAETGSGKTLAF 167 Query: 61 SLPLLQNLDPEL-----KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRY 115 LP ++ + P +LVLAPTRELA Q+ + FS + + YGG Sbjct: 168 ILPAFVHILAQPSLKYGDGPIVLVLAPTRELAEQIRQECVKFSVESK-IRNTCAYGGVPK 226 Query: 116 DVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMA 175 Q+ AL+QG I++ PGRL+D L++ +L +++ LVLDEAD+ML MGF + I+ Sbjct: 227 SGQIYALKQGVHILIACPGRLIDLLEQNVTNLMRVTYLVLDEADKMLDMGFEIQIRKIVE 286 Query: 176 QIPEGHQTALFSATMPEAIRRITRRFMKE-PQEVRIQSSVTTR-PDISQSYWTVWGMRKN 233 QI QT ++SAT P+ ++ + R K+ P V + S T I Q + + K Sbjct: 287 QIRPDRQTLMWSATWPKEVQSLARDLCKQQPIHVNVGSLTLTACRRIKQEIYLIEEHEKI 346 Query: 234 EALVRFLEA--EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERL 291 L L+ D D I+FV TK + +AL +G + ++GD Q R L Sbjct: 347 ANLKLLLQRIFRDNDRIIVFVETKKNADFITKALRLDGVPALCIHGDKKQDERRWVLNDF 406 Query: 292 KDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVEN 351 K G+ ILIATDVA+RGLD++ + VVN+D P E YVHRIGRTGRAG G + F+ + Sbjct: 407 KTGKSPILIATDVASRGLDIKDVKYVVNFDFPNQIEDYVHRIGRTGRAGAHGASFTFLTS 466 Query: 352 RERRLLRNIERTMKLTIPEVELPNAELLG 380 + RL R++ + ++ + V P E + Sbjct: 467 DKYRLARDLVKILRESEQPVP-PQLEKIS 494 >UniRef50_A9M0D7 ATP-dependent RNA helicase, putative n=21 Tax=Neisseria RepID=A9M0D7_NEIM0 Length = 457 Score = 562 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 162/449 (36%), Positives = 236/449 (52%), Gaps = 12/449 (2%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 F+ LGL ++ AL GYE P+PIQA IP L G D+L AQTG+GKTAAF LP Sbjct: 1 MSNPFSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLP 60 Query: 64 LLQNLD--------PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRY 115 L+ L P + ++LVL PTRELA Q+ + + + K++ + L+GG Sbjct: 61 SLERLKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLP-LRHTVLFGGMNM 119 Query: 116 DVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMA 175 D Q LR G +IVV T GRLLDH+K+ + L+K+ +VLDEAD ML MGFI+D+ IM Sbjct: 120 DKQTADLRAGCEIVVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQ 179 Query: 176 QIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA 235 +P QT LFSAT IR++ + FM P+ V + + TT ++ Q V ++K Sbjct: 180 MLPRQRQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTIQKRNL 239 Query: 236 LVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGR 295 L R + + I+F +TK + V L R ++ A++GD +Q R +TL KDG Sbjct: 240 LERLIVDLHMNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGN 299 Query: 296 LDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERR 355 L +L+ATD+AARGLD+ + V+NY++P E YVHRIGRTGRAG G A+ ++ E++ Sbjct: 300 LRVLVATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQK 359 Query: 356 LLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAE 415 + +I+ + + E + E+ AK ++ + R +K Q Sbjct: 360 MFESIKELTGNKLLIERIEGFEP---QWWEQGGAKPEKPEMREPRQRNRYESAKAQREKN 416 Query: 416 GEELDLETLAAALLKMAQGERTLIVPPDA 444 + A A G Sbjct: 417 TRPENAANDAGAACGKIAGRSRRSRREHR 445 >UniRef50_C4QFR3 DEAD box ATP-dependent RNA helicase, putative n=2 Tax=Schistosoma RepID=C4QFR3_SCHMA Length = 944 Score = 562 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 141/390 (36%), Positives = 208/390 (53%), Gaps = 19/390 (4%) Query: 2 AEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFS 61 E +F D+ L I E + Y P+P+Q +P + RD++ AQTGSGKTAAF Sbjct: 155 VEPIKSFNDVELHQIIKENVTRAQYIHPTPVQKYALPIIAAKRDLMACAQTGSGKTAAFL 214 Query: 62 LPLLQNLDPELKA-------------PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVA 108 LP+L L + P L+LAPTREL+ Q+ + FS + + Sbjct: 215 LPILNMLFEDNHCENSDASALSCAVCPLALILAPTRELSSQIYDEARKFS-YRSNIKPCV 273 Query: 109 LYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIE 168 +YGG Q+R L G ++V TPGRL+D + RG + L ++ VLDEAD ML MGF Sbjct: 274 VYGGASILAQIRELSHGCNLLVATPGRLVDMVSRGKVSLEQIRFFVLDEADRMLDMGFEP 333 Query: 169 DVETIMAQ--IPE--GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSY 224 + I+ Q +P QT +FSAT P+ I+ + R F+ + + +T +I Q Sbjct: 334 QIRRIVEQHGMPPAGKRQTLMFSATFPKEIQTLARDFLHSYIFLAVGRVGSTNENIIQEV 393 Query: 225 WTVWGMRKNEALVRFLEAEDFD-AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQAL 283 V K + LVR L+ +D D A++FV TK +A+ L + + +++GD Q Sbjct: 394 LNVADKDKPDMLVRLLQGKDPDGLALVFVETKRGADVLAKFLCQLNFPVTSIHGDRPQTE 453 Query: 284 REQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAG 343 RE L+ + GR ILIAT VAARGLD+ + V+N+D+P D E YVHRIGRTGR G+ G Sbjct: 454 REHALQSFRSGRTPILIATAVAARGLDIPNVKHVINFDLPSDIEEYVHRIGRTGRMGQPG 513 Query: 344 RALLFVENRERRLLRNIERTMKLTIPEVEL 373 A F + + ++R++ ++ + V Sbjct: 514 SATSFFSEKNQNVVRDLVELLRESKQAVPP 543 >UniRef50_A7K2L3 ATP-dependent RNA helicase n=17 Tax=Vibrionaceae RepID=A7K2L3_VIBSE Length = 419 Score = 561 bits (1446), Expect = e-158, Method: Composition-based stats. Identities = 159/404 (39%), Positives = 239/404 (59%), Gaps = 3/404 (0%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 FADLG++ ++E L++L P+P+Q + IPH+L G+++L AQTG+GKTAAF LP Sbjct: 1 MSVNFADLGIEQKLIETLSNLNIVTPTPVQEKSIPHVLEGKNLLAAAQTGTGKTAAFGLP 60 Query: 64 LLQNLDPEL--KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 ++Q + + PQ LVL PTRELA QV + + +S + +V +YGG VQ R Sbjct: 61 IIQTVQQKKLNGTPQALVLVPTRELAQQVFDNLNQYSAQTE-LRIVCVYGGTSIGVQKRK 119 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 L +G I++ TPGRLLDHL G +++SK S LVLDEAD ML MGF D++ I ++P Sbjct: 120 LEEGADILIATPGRLLDHLFNGNVNISKTSMLVLDEADRMLDMGFWPDLQRIFRRLPAEK 179 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 Q LFSAT + I+ I + M+ P EV + + TT + Q + V RK E L + Sbjct: 180 QILLFSATFEKRIKTIAYKLMESPVEVEVSPANTTAETVKQMVYPVDKKRKRELLAYLIG 239 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 + ++ ++F +TK + E+A+ L+ +G + ++NGD +Q R++ L+ K G++ LIA Sbjct: 240 SRNWQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVRALIA 299 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 TDVAARGLD++ + VVN+D+P +E YVHRIGRTGRAG++G A+ + E LL IE Sbjct: 300 TDVAARGLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSLMSRDEEYLLHAIE 359 Query: 362 RTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRA 405 + +P+ L E +E ++ S + Sbjct: 360 NLLDQRLPQEWLAGFEPTLIEEVEPEKNGSGRRRSRSSEKRKLK 403 >UniRef50_C4Q2M5 DEAD box ATP-dependent RNA helicase, putative n=2 Tax=Schistosoma mansoni RepID=C4Q2M5_SCHMA Length = 879 Score = 560 bits (1445), Expect = e-158, Method: Composition-based stats. Identities = 153/633 (24%), Positives = 261/633 (41%), Gaps = 13/633 (2%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 + F++ G + I+ + ++ P+PIQ + P L+GRD++G+AQTGSGKTA+F Sbjct: 72 VPRPLFKFSEAGFPSYIMSVIKKSKWDSPTPIQCQGWPVALSGRDLVGIAQTGSGKTASF 131 Query: 61 SLPLLQNLDPEL-----KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRY 115 LP + + + P +L+L PTRELA QV + DF + G LYGG Sbjct: 132 LLPAIVHAKAQPSLKRGDGPIVLILVPTRELAQQVEKVAEDFC-YSAGFKSACLYGGASR 190 Query: 116 DVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMA 175 Q AL Q P++V+ TPGRLLD L+ ++ + + LVLDEAD ML MGF + +++ Sbjct: 191 TGQAEALGQSPEVVIATPGRLLDFLESRHTNMRRCTYLVLDEADRMLDMGFEPSIRRVVS 250 Query: 176 QIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQS-SVTTRPDISQSYWTVWGMRKNE 234 Q+ QT ++SAT P ++ + F+ + ++ + S ++ +I Q + K + Sbjct: 251 QVRPDRQTLMWSATWPREVKALAEDFLYDYIQINVGSTKLSANHNIRQHVEILNESEKFK 310 Query: 235 ALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDG 294 L+ L + D ++F TK T E+ + L+ G+++ A++GD +Q R++ L+ ++G Sbjct: 311 RLLSLLNSFDNARVLVFTETKKRTDELCQKLQDKGFDATAMHGDKHQKERDRALDMFREG 370 Query: 295 RLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRER 354 + +L+ATDVA+RGLD+ + ++NYD P +E Y+HRIGRTGR+ + G A F ++ Sbjct: 371 HISVLVATDVASRGLDINDVRYIINYDYPSQTEDYIHRIGRTGRSDKKGTAYTFFSAKQP 430 Query: 355 RLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTA 414 RL R + +K + ++ +E+ + Q S K + Sbjct: 431 RLARELIEVLKEARQTIPDELFKIAEGYYVERTRSSGQSYRRSRSGSSRSVSSGKRSISK 490 Query: 415 EGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDRED 474 + + +P R R R+ N + Sbjct: 491 RSRSSASRHSRSHSSRSGTSY-----RSRSPQTKGYHSRARSKSLSRNGNGAASDESKVS 545 Query: 475 RPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELP 534 PR R R + + + +N SS + ++ + Sbjct: 546 SPRERRSYGSHTPPKRKDRSQSSQYS-KDAYREESNHHRSSSDGSPSKRIKERSHSSRSS 604 Query: 535 KGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERR 594 + R + A H +R + Sbjct: 605 HSGKHKYSHSPQREDVERTHSASSGGRSASRHRSQSSVHSRSKSSSVKRSQRESNRSSVS 664 Query: 595 EGGRGDGRRFSGERREGRAPRRDDSTGRRRFGG 627 R E R D Sbjct: 665 HNSHQSASREHSGSMEHSPARTDPDVADHSSRS 697 >UniRef50_C7JBN9 DNA/RNA helicase n=19 Tax=cellular organisms RepID=C7JBN9_ACEP3 Length = 636 Score = 560 bits (1444), Expect = e-158, Method: Composition-based stats. Identities = 175/502 (34%), Positives = 264/502 (52%), Gaps = 37/502 (7%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 TFADL L PIL A++D+GY P+PIQ + IP +L RDV+G+AQTG+GKTA+F+LP Sbjct: 153 NSVTFADLELSEPILRAISDMGYTHPTPIQEQAIPAILMARDVMGVAQTGTGKTASFTLP 212 Query: 64 LLQNLD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 +L+ L + P+ L+L PTRELA+QVAE ++ K+++ +N L GG+ Q Sbjct: 213 MLEILSDSRARARMPRSLILEPTRELALQVAENFVNYGKYLK-LNHALLIGGESMADQKE 271 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 L +G +++ TPGRLLD +RG L L+ LV+DEAD ML MGFI D+E I+ +P Sbjct: 272 VLNRGVDVLIATPGRLLDLFERGGLMLNHTGILVIDEADRMLDMGFIPDIEKIVGLLPPN 331 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 QT LFSATM IR++ F+ P+E+ + + I+ V K E L + L Sbjct: 332 RQTLLFSATMAPTIRKLADAFLHSPKEITVARQSSVATTITTGIVVVDEYSKRETLRQLL 391 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 + AI+F K + ++L ++G+++AAL+GD+ Q++R TLE+ K+ L +L+ Sbjct: 392 KDPALQNAIVFCNRKRDVDILTKSLVKHGFSAAALHGDLPQSVRFSTLEKFKNDELKVLV 451 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 +DVAARG+D+ +S V N+D+P +E YVHRIGRTGRAGR G A ++ L I Sbjct: 452 CSDVAARGIDIGGLSHVFNFDLPFHAEDYVHRIGRTGRAGREGHAYSIATPYDKALAEAI 511 Query: 361 ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELD 420 E+ IP + L + L ++ A ++ + ++ Sbjct: 512 EKLTGKEIPRMALDGVKQLEWSDEKRPPAGRTRKPRTPQRER------------------ 553 Query: 421 LETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRER 480 E + P + K + R +R P RN R R + P + Sbjct: 554 --------------ENAVPTPREQQPEAKPQQTARPERQP-TRNTRHQRDEIPPAPGGDV 598 Query: 481 RDVGDMQLYRIEVGRDDGVEVR 502 + GDM + + R V Sbjct: 599 QGFGDMVPAFMLLPRRSSVRPA 620 >UniRef50_B3QTY3 DEAD/DEAH box helicase domain protein n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QTY3_CHLT3 Length = 431 Score = 560 bits (1443), Expect = e-158, Method: Composition-based stats. Identities = 151/366 (41%), Positives = 222/366 (60%), Gaps = 5/366 (1%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 F + L IL AL +LGYE P+ IQA IP + G+D+L AQTG+GKTAAF+LP+L Sbjct: 5 NFESISLNPSILRALKELGYETPTAIQAAAIPEAILGKDILATAQTGTGKTAAFALPILH 64 Query: 67 NLDPEL----KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 L +AP+ L+L PTRELA+Q+ + +++++R + + GG Q++ L Sbjct: 65 RLGENRSYDIRAPRALILTPTRELALQIDNNIRLYARYLR-LRTGVIMGGVPAHPQIKML 123 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 R+ P I+V TPGRL+D +G + L ++ VLDEAD ML MGFI+D+ I + P HQ Sbjct: 124 RRNPDILVATPGRLIDLFDQGFIGLDQIQTFVLDEADRMLDMGFIDDIRRIESLQPRDHQ 183 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 T LFSAT+ I + R ++EP + + + +I+Q V K E L + Sbjct: 184 TLLFSATLSPEIEALASRMLREPVRIEVAPVSSVADNITQKVLFVEQNNKRELLHNLFKE 243 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 D A++F RTK VAE L R G ++ A++ +Q R++ L G++++L+AT Sbjct: 244 NDIKRALVFTRTKQRANHVAEQLIRLGISADAIHSSKSQRARQRALMLFDRGKINVLVAT 303 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 D+AARG+DV+ IS V+NY++P D E+YVHRIGRT RAG +G AL F + E R+L+ IE+ Sbjct: 304 DIAARGIDVDGISHVINYELPDDPENYVHRIGRTARAGASGTALSFCDADEVRMLKGIEK 363 Query: 363 TMKLTI 368 K +I Sbjct: 364 LTKSSI 369 >UniRef50_Q0BSI7 ATP-dependent RNA helicase n=54 Tax=Alphaproteobacteria RepID=Q0BSI7_GRABC Length = 763 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 169/490 (34%), Positives = 256/490 (52%), Gaps = 10/490 (2%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 FADLGL P+ A+ ++GY P+PIQA+ IP +L GRDVLG AQTG+GKTA+F+LP++ Sbjct: 225 FADLGLSEPVQRAITEMGYLHPTPIQAQAIPVVLMGRDVLGCAQTGTGKTASFTLPMMDI 284 Query: 68 LD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 L + P+ L+L PTRELA+QVAE + ++++ +N L GG+ + Q L + Sbjct: 285 LSDRRARARMPRSLILEPTRELALQVAENFVKYGQYLK-LNHALLIGGESMNDQRDVLSK 343 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 G +++ TPGRL+D RG L L+ LV+DEAD ML MGFI DVE I++ +P QT Sbjct: 344 GVDVLIATPGRLIDLFDRGGLLLTDTRILVIDEADRMLDMGFIPDVERIVSLLPHNRQTL 403 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 FSATM IRR+ F++ P+E+ + + I+ V M K +AL L E Sbjct: 404 FFSATMAPEIRRLADAFLQNPKEITVAKPASVATTITSGLALVGEMDKRKALRHLLRQEK 463 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 A+IF K + ++L ++G+ + L+GD+ Q+LR TLE+ K G L +L+ +DV Sbjct: 464 VQNALIFCNRKRDVDILTKSLVKHGFAAGPLHGDLAQSLRFSTLEKFKAGSLQLLVCSDV 523 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 AARG+D+ +S V N+D+P+ +E YVHRIGRTGRAGR G A ++ + IE+ + Sbjct: 524 AARGIDIGGLSHVFNFDVPIHAEDYVHRIGRTGRAGREGAAFTLASPDDKFAVDAIEKLI 583 Query: 365 KLTIPEVELPNA------ELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEE 418 IP +E+ E + R + + + + + K + E + Sbjct: 584 NAPIPRIEIEGLERAEWSEEPNRGRGRRHKNGKGGKGNNRYGSRGQDNARKDRAFTEADA 643 Query: 419 LDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRR 478 + + + P R R R+D R ++ G Sbjct: 644 KSQADITPDPVAEVATTQPAPAPAQPTQSQDRHHRSRNDEHGRQKHSGGHNQPHAPGSAS 703 Query: 479 ERRDVGDMQL 488 V D + Sbjct: 704 SNAAVEDRRP 713 >UniRef50_O26305 ATP-dependent RNA helicase, eIF-4A family n=1 Tax=Methanothermobacter thermautotrophicus str. Delta H RepID=O26305_METTH Length = 425 Score = 558 bits (1439), Expect = e-157, Method: Composition-based stats. Identities = 174/423 (41%), Positives = 263/423 (62%), Gaps = 9/423 (2%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F++ + I AL+D+G+E +PIQA +P L+G DV+G AQTG+GKTAAF++P+L+N Sbjct: 6 FSEFDISGDINRALDDMGFESTTPIQALTLPVTLDGMDVVGEAQTGTGKTAAFAIPVLEN 65 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 L+ E + PQ L++ PTREL +QV+E + K+M+ V V+A+YGGQ Q+ LR+G Sbjct: 66 LEAE-RVPQALIICPTRELCLQVSEEIKRIGKYMK-VKVLAVYGGQSIGNQIAQLRRGVH 123 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 ++V TPGRL+DH++RGT+DL +S +VLDEADEML MGFI+D+E I++ +PE QT LFS Sbjct: 124 VIVATPGRLIDHIERGTVDLGGISTVVLDEADEMLNMGFIDDIERILSHVPERRQTMLFS 183 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 AT+ + I RI R++M+ PQ +R++ + P I + Y+ K E L L + + Sbjct: 184 ATVSKPILRIARKYMRNPQVMRVEKKHS--PKIDEFYFKTREEDKVELLDWILSSNNIRM 241 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 +IF TK + L R GY++ ++GD++Q+ RE+ +ER + G +L+ATDVAAR Sbjct: 242 GLIFCNTKRRVQRLRRQLNRMGYSADEIHGDLSQSKRERVMERFRRGDFSLLVATDVAAR 301 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 G+ V + VVNYD+P ++E YVHRIGRTGRAG +G++ V E LR I+ Sbjct: 302 GIHVPDVEAVVNYDLPFENEYYVHRIGRTGRAGSSGKSFTLVVGSEVHRLRRIQSFTGKR 361 Query: 368 IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAA 427 I + +P+ E + + +++ LES S+I + GE ++ A Sbjct: 362 IKQSNMPSPEEIRRGYEMDLREILRRNLESKTYSD-----SEILESLAGEGYSFRDISHA 416 Query: 428 LLK 430 LL Sbjct: 417 LLD 419 >UniRef50_P19109 ATP-dependent RNA helicase p62 n=11 Tax=Eukaryota RepID=DDX17_DROME Length = 719 Score = 558 bits (1439), Expect = e-157, Method: Composition-based stats. Identities = 132/395 (33%), Positives = 211/395 (53%), Gaps = 13/395 (3%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 + F+++ L +++ + GY+ P+ IQA+ P ++G + +G+A+TGSGKT + Sbjct: 276 VPNPIQDFSEVHLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGY 335 Query: 61 SLPLLQNLDPEL-----KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRY 115 LP + +++ + P LVLAPTRELA Q+ + T+F V ++GG Sbjct: 336 ILPAIVHINNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSY-VRNTCVFGGAPK 394 Query: 116 DVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMA 175 Q+R L++G +IV+ TPGRL+D L G+ +L + + LVLDEAD ML MGF + I++ Sbjct: 395 GGQMRDLQRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVS 454 Query: 176 QIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQS-SVTTRPDISQSYWTVWGMRKNE 234 QI QT ++SAT P+ ++++ F+ ++ I S ++ +I Q K E Sbjct: 455 QIRPDRQTLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEE 514 Query: 235 ALVRFLEA-----EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLE 289 L L E IIFV TK + + G A++GD +Q+ R+ L Sbjct: 515 KLKTLLSDIYDTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLR 574 Query: 290 RLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFV 349 + G+ +IL+ATDVAARGLDV+ I V+N+D P +SE Y+HRIGRTGR+ G + F Sbjct: 575 EFRSGKSNILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFF 634 Query: 350 ENRERRLLRNIERTMKLTIPEVELPNAELLGKRRL 384 + + + ++ E+ P E L + Sbjct: 635 TKNNAKQAKALVDVLREANQEIN-PALENLARNSR 668 >UniRef50_Q30PP0 DEAD/DEAH box helicase-like protein n=11 Tax=Bacteria RepID=Q30PP0_SULDN Length = 540 Score = 558 bits (1438), Expect = e-157, Method: Composition-based stats. Identities = 184/485 (37%), Positives = 273/485 (56%), Gaps = 13/485 (2%) Query: 3 EFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSL 62 E TF DLGLK IL ++ D G+ PSPIQA IP +L GRD++G A TG+GKTAAF L Sbjct: 11 EKLITFDDLGLKKEILRSVKDAGFTVPSPIQAAAIPFILAGRDIVGQAHTGTGKTAAFGL 70 Query: 63 PLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 P L N++P ILV+ PTRELA QV++ + + +++ G V +YGG Y+ Q+ + Sbjct: 71 PALNNINPN-DGVGILVITPTRELATQVSDELFKYGRNI-GARTVTVYGGSSYNRQIDLI 128 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 ++G +VV TPGRLLD LK+ L S +VLDEADEML MGF++D+ I + +P Q Sbjct: 129 QRGASVVVATPGRLLDILKKNLLKDFAPSIVVLDEADEMLDMGFLDDINEIFSYLPSNRQ 188 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 T LFSATMP+ I+ + R + P+ + I TT DI+Q Y+ + +++A++R ++A Sbjct: 189 TLLFSATMPKPIKLLAERILDNPEFISITKGETTNTDINQEYYVIEESERDDAIIRLMDA 248 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 E +I+F RTK+ ++ L GY + L+GDM Q RE ++ K+ + +L+AT Sbjct: 249 EACQKSIVFCRTKSEVDRLSNVLSSAGYLANGLHGDMEQRQRETVIKGFKNNGVKVLVAT 308 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 DVAARG+ V+ IS V NY IP D ESYVHRIGRTGRAG G+A+ + E + L+ I+ Sbjct: 309 DVAARGIHVDNISHVFNYHIPFDPESYVHRIGRTGRAGTKGKAITLLTPLEFKELQRIKT 368 Query: 363 TMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLE 422 + T+ +P+ L L+ A +++ + Q +L E++D Sbjct: 369 KVGTTMTHAFVPSKNDLRAINLKSIATSIEEHNIYDEAHQILDML--------KEDIDEP 420 Query: 423 TLAAALLKMAQGERTLIVPPDAPMRPKR---EFRDRDDRGPRDRNDRGPRGDREDRPRRE 479 T+ L+ M + + P + ++ D R RG+R RP + Sbjct: 421 TIMFKLVSMILDRQAIQGPNSIGIPAEKLAAILERADKRRDSKGGRGNFRGNRSARPSGD 480 Query: 480 RRDVG 484 R G Sbjct: 481 RNRSG 485 >UniRef50_D2L498 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L498_9DELT Length = 492 Score = 558 bits (1438), Expect = e-157, Method: Composition-based stats. Identities = 166/493 (33%), Positives = 243/493 (49%), Gaps = 7/493 (1%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 +F L A I E + LGYE P+PIQAE IPH+ GRD++G+AQTG+GKTAAF LP++ Sbjct: 1 MSFDSFCLHATITENIKRLGYENPTPIQAEAIPHVTEGRDLMGLAQTGTGKTAAFLLPII 60 Query: 66 QNLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 L E + + L+LAPTRELA Q+ A D + R + +YGG Q RAL Sbjct: 61 HRLMTTKSEKRGVRALILAPTRELAEQIYRAGLDLGRGTR-LRAAVIYGGVGMFPQTRAL 119 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 RQG I+V PGRLLDH+ +G + L LVLDEAD M MGF+ D++ I++ +P Q Sbjct: 120 RQGVDIIVACPGRLLDHMNQGNVRFDALETLVLDEADHMFDMGFLPDIKRILSALPSERQ 179 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 T LFSATMP AI + + +P VRI + + + + + +K L+ LE Sbjct: 180 TLLFSATMPPAISGLAHETLTDPVTVRIGH-MAPLSTVEHAIYPISHTQKAPLLLHLLEE 238 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 + I+F RTK+ +A L R+G+ + L G+++Q R+ ++ + G +L+AT Sbjct: 239 AGKQSVIVFTRTKHRAKNLALQLCRSGHKATCLQGNLSQRQRQIAMDGFRRGSFQVLVAT 298 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 D+AARG+DV ++ VVN+DIP +E+Y HRIGRTGRA G+A FV + ++R IE Sbjct: 299 DIAARGIDVSQVGHVVNFDIPDTAEAYTHRIGRTGRAEHEGQAHTFVTGEDMGMVRAIES 358 Query: 363 TMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEL--D 420 MK +P E+ E +A + D Sbjct: 359 HMKKPLPRREVEGFEPDPSEFRRSYAPAPRYPARGRQGGYGGRPQQGGYRGQGDRARSSD 418 Query: 421 LETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRER 480 + + QG+R R +R ++R ND + Sbjct: 419 RPQGERSFSERPQGDRPRDDRARPDTRTERPRQERPQAARSHGNDGRSTFGLSREQGDRQ 478 Query: 481 RDVGDMQLYRIEV 493 + + Sbjct: 479 GGQRPRRPAQGNA 491 >UniRef50_A8IAJ3 Helicase n=4 Tax=Alphaproteobacteria RepID=A8IAJ3_AZOC5 Length = 582 Score = 558 bits (1438), Expect = e-157, Method: Composition-based stats. Identities = 182/497 (36%), Positives = 260/497 (52%), Gaps = 10/497 (2%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 +F++LGL +L A+ GY P+PIQA+ IPH+L RDVLG+AQTG+GKTAAF+LP+L Sbjct: 64 MSFSELGLSEKVLSAVAATGYTTPTPIQAQAIPHVLARRDVLGLAQTGTGKTAAFTLPML 123 Query: 66 QNLD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 L+ + P+ L+L PTRELA QV E + K+ +NV L GG + Q L Sbjct: 124 TLLEQGRARARMPRTLILEPTRELAAQVEENFVRYGKN-HKLNVALLIGGVSFGDQDTKL 182 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 +G +++ TPGRLLDH++RG L LS + LV+DEAD ML MGFI D+E I +P Q Sbjct: 183 LRGVDVLIATPGRLLDHVERGRLLLSGIEVLVIDEADRMLDMGFIPDIERICKLVPFTRQ 242 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWT--VWGMRKNEALVRFL 240 T FSATMP I+R+ +F+ P V + + I+Q K E L + Sbjct: 243 TLFFSATMPPEIQRLVSQFLSNPVRVEVSKPASANTSITQLLVASGREDYEKRETLRELI 302 Query: 241 EAEDF-DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299 D I+F K V +L+++G+N L+GDM+Q R Q L++ + G +L Sbjct: 303 RNADQLQNGIVFCNRKRDVAVVHRSLQKHGFNVVCLHGDMDQHARTQALDQFRTGEATLL 362 Query: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359 +A+DVAARGLD+ +S V NYD+P SE YVHRIGRTGRAGR G A++ V + + + L Sbjct: 363 VASDVAARGLDIPAVSHVFNYDVPHHSEDYVHRIGRTGRAGRTGTAIMLVTHDDAKSLAA 422 Query: 360 IERTMKLTIPEVELPNAELLGKRRL--EKFAAKVQQQLESSDLDQYRALLSKIQPTAEGE 417 IE+ + IP P E + + + + + + R + +G Sbjct: 423 IEKLIGNAIPWQGEPLGEAPPREKRSRGGDRREERGERSERNKRSGRGRSERKAEVEDGV 482 Query: 418 ELDLE-TLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRP 476 E+ E A + E P A +P+ E R +R R + P G+R +P Sbjct: 483 EVRAERAPRPAREGRPEREPRPEREPRAERQPRPEREARPEREARPEREARPEGERARKP 542 Query: 477 RRERRDVGDMQLYRIEV 493 R E D Sbjct: 543 RPETADAASRNRRDRSA 559 >UniRef50_B7EQA6 cDNA clone:J023079L21, full insert sequence n=5 Tax=Magnoliophyta RepID=B7EQA6_ORYSJ Length = 759 Score = 557 bits (1436), Expect = e-157, Method: Composition-based stats. Identities = 151/495 (30%), Positives = 232/495 (46%), Gaps = 17/495 (3%) Query: 21 LNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP---LLQNLDPELK-APQ 76 + G+ P+PIQA+ P L RD++ +A+TGSGKT + +P LL+ L + P Sbjct: 246 VQQAGFSAPTPIQAQSWPIALRNRDIVAVAKTGSGKTLGYLIPGFILLKRLQHNSRDGPT 305 Query: 77 ILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRL 136 +LVL+PTRELA Q+ + F + R ++ V LYGG QLR L +G IVV TPGRL Sbjct: 306 VLVLSPTRELATQIQDEAKKFGRSSR-ISSVCLYGGAPKGPQLRDLERGADIVVATPGRL 364 Query: 137 LDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRR 196 D L+ + L ++S LVLDEAD ML MGF + I+ Q+ QT +F+AT P+ +R+ Sbjct: 365 NDILEMRRVSLHQVSYLVLDEADRMLDMGFEPQIRKIVKQVQPKRQTLMFTATWPKEVRK 424 Query: 197 ITRRFMKEPQEVRIQS--SVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD-AAIIFVR 253 I + P +V I + + I+Q + K+ L + L +++ IIF Sbjct: 425 IASDLLSNPVQVNIGNTDQLVANKSITQYVDVITPPEKSRRLDQILRSQEPGSKIIIFCS 484 Query: 254 TKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVER 313 TK ++A L R Y ++A++GD +QA R+ L + GR IL+ATDVAARGLD++ Sbjct: 485 TKRMCDQLARNLARQ-YGASAIHGDKSQAERDSVLSEFRSGRCPILVATDVAARGLDIKD 543 Query: 314 ISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVEL 373 I +VVNYD P E YVHRIGRTGRAG G A F +++ + ++ + ++ V Sbjct: 544 IRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFCDQDSKYASDLVKILEGANQSVSQ 603 Query: 374 PNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAALLKMAQ 433 +++ + + + +S Y + + ++ + + Sbjct: 604 QLRDMVSRGGYGGRSRRWASSDDSYGGRGYDSGYTSRSTDNYNSGYGSQSGNGSSFHSSF 663 Query: 434 GERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRP--------RRERRDVGD 485 + F + N D+P R G Sbjct: 664 HNSNSGNQFGDTSGFQTSFHNSSSNNQTSDNPSFHASSNNDQPGDGLSFHARFYSSSRGS 723 Query: 486 MQLYRIEVGRDDGVE 500 Q G D Sbjct: 724 DQSRTNNAGFRDRSR 738 >UniRef50_C6ATS7 DEAD/DEAH box helicase domain protein n=15 Tax=Alphaproteobacteria RepID=C6ATS7_RHILS Length = 580 Score = 557 bits (1435), Expect = e-157, Method: Composition-based stats. Identities = 183/587 (31%), Positives = 268/587 (45%), Gaps = 35/587 (5%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 T F LG+ PI+ L LG E P+PIQ IP LL GRD++G+AQTG+GKTAAF LPL+ Sbjct: 23 TNFESLGVSKPIIATLFQLGIETPTPIQEHSIPLLLEGRDLIGLAQTGTGKTAAFGLPLI 82 Query: 66 QNLDPELKAP-----QILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 + L + + P + L+LAPTREL Q+AE++ F + + + + GG + Q Sbjct: 83 EKLLADERRPDNRTTRTLILAPTRELVNQIAESLKKFIR-KSSLRINVVVGGVSINKQQL 141 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 L +G I+V TPGRLLD + R + L+ + LVLDEAD+ML +GF+ D+ I +P+ Sbjct: 142 QLEKGTDILVATPGRLLDLINRRAITLTAVRYLVLDEADQMLDLGFVHDLRKIAKMVPKK 201 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVW-GMRKNEALVRF 239 QT LFSATMP+AI + ++ +P +V + + Q V K E L + Sbjct: 202 RQTMLFSATMPKAIADLAGEYLVDPVKVEVTPPGKAADKVEQYVHFVAGKNDKTELLRKS 261 Query: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299 L A++F+RTK+ ++ + LE GY+ A+++G+ +Q RE+ L+ +DG + L Sbjct: 262 LTENPDGRAMVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIKTL 321 Query: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359 IATDVAARG+D+ +S V NYD+P ++YVHRIGRT RAGR G A+ F E +LLR+ Sbjct: 322 IATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEAKLLRD 381 Query: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEL 419 IER M + I + + + + E Sbjct: 382 IERLMGIDITVASGEAPANISGGPRRANGNGNNRNRNGGQGREGQGRGEGRGDQNRSEHR 441 Query: 420 DLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRE 479 + E P ++ R+ D RG R G D Sbjct: 442 GNRQERRPRREGEGSEVRAGGEERRPRPERQTSRNEDFRGQRRGETTPDLGPDNDLASTS 501 Query: 480 RRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPG 539 G E G+ + + H+ + Sbjct: 502 DFRASAKPQRPAHHGAHANGEPS-----------------GHHRGNSRHAHGRPARKHGE 544 Query: 540 EVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGG 586 + P Q + GG RGG R GG+RRE Sbjct: 545 D-----------RGPQQAQAGEPRRDGNGGNHRGGSRNGGGQRRERA 580 >UniRef50_Q4FSS4 Possible ATP-dependent DEAD/DEAH box RNA-helicase n=5 Tax=Proteobacteria RepID=Q4FSS4_PSYA2 Length = 567 Score = 556 bits (1434), Expect = e-157, Method: Composition-based stats. Identities = 179/519 (34%), Positives = 256/519 (49%), Gaps = 11/519 (2%) Query: 3 EFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSL 62 E + TF DL + PIL AL GY P+PIQAE IP L GRD+L AQTGSGKTAAF + Sbjct: 41 ENKVTFTDLNIAKPILSALERSGYTHPTPIQAEAIPFALQGRDLLLSAQTGSGKTAAFVI 100 Query: 63 PLLQNLDPE---LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119 P+L L K + L+L PTRELA QV +++ +SK MRG+ V L GG Y+ Q+ Sbjct: 101 PVLDRLSRATSFDKLTKALILTPTRELAQQVHDSVRTYSKDMRGLFCVPLVGGAPYNGQI 160 Query: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179 AL++G Q++V TPGRLLDH+ G +DLS L LVLDEAD ML MGF +D+ I+ P Sbjct: 161 TALKKGVQVIVATPGRLLDHINAGRVDLSSLEILVLDEADRMLDMGFADDISDILRAAPI 220 Query: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWG-MRKNEALVR 238 QT + SAT + +I F K P+ V I+ I + + KN L + Sbjct: 221 DRQTIMCSATWDGPVGKIAASFTKNPERVSIKVESA---HIEEKVYYCDDFDHKNRLLDK 277 Query: 239 FLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDI 298 + +D + IIF TK +T ++A+ L+ G+ ++ L+GD+ Q+ R + ++ L++G+ I Sbjct: 278 IVCHKDMEQIIIFAATKRSTEKLAKQLQEAGHKASFLHGDLPQSKRNRIVQDLRNGKCKI 337 Query: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLR 358 L+ATDVAARGLDV +S V+NYD+P +E YVHRIGR GRAGR G A+ +R L Sbjct: 338 LVATDVAARGLDVPALSHVINYDLPRQTEDYVHRIGRCGRAGRTGVAISLCSMDDRPQLN 397 Query: 359 NIERTMKLTIPEVELPNAELLGK-RRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGE 417 I R + + + E E + S+ + + Sbjct: 398 AINRYLDRKMEASVIEGMEPKKTYVPSENKGNGRGRGRGRSNGGGNGNGQGRGRSAGGYA 457 Query: 418 ELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPR 477 + G+ + A + + RD G + G + Sbjct: 458 GSGASKPSGQGRGRPSGDSSNATGQRASNDSGYQGKPRDSSGKPNERSGGKPYQGKRTGA 517 Query: 478 RERRDVGDMQLYRIEV---GRDDGVEVRHIVGAIANEGD 513 R D + GR G + R + + Sbjct: 518 PSRGDSTGVPRGERAATGRGRPSGSQGRPAARSDSRGQG 556 >UniRef50_D0WJ40 Putative ATP-dependent RNA helicase RhlE n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WJ40_9ACTN Length = 721 Score = 556 bits (1434), Expect = e-157, Method: Composition-based stats. Identities = 183/633 (28%), Positives = 281/633 (44%), Gaps = 27/633 (4%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 TF DLGL L A+ DLGY +P+P+Q + IP +L GRD++ A+TG+GKTAAFSLP L Sbjct: 25 TFNDLGLSEKALSAVVDLGYSEPTPVQEKAIPVVLEGRDLIAAAKTGTGKTAAFSLPTLD 84 Query: 67 NLD--PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 L + + P ++++ PTRELA Q+A+ ++ + V L GG Y Q++ LR Sbjct: 85 QLRYRADDEGPLMVIVTPTRELAQQIADTCAPIARRT-NHSTVVLLGGVGYGPQIKKLRA 143 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 G I++ TPGRLLD +++G DL + LVLDEAD ML MGF V I+ IP QT Sbjct: 144 GADIIIATPGRLLDLMRQGAADLGNVEKLVLDEADRMLDMGFWPQVSEIVDAIPAERQTL 203 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 LFSAT+ + ++ +K+P+ + I I Q K L F+ Sbjct: 204 LFSATIDRSQDKVMFSLLKDPEIIEIAHRGDVADLIDQYVIKTDRRLKPALLNSFVRERG 263 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 I+F RTK + L + G + A++ D +QA R + L+ ++G+ +L+ATDV Sbjct: 264 GFRVIVFTRTKGGADNCTKRLRKIGIATEAIHADRSQAQRARALDNFREGKTHVLVATDV 323 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 +RG+DV + V+NYD+PM E YVHRIGRTGRAG G A+ FV R LL++I++ + Sbjct: 324 LSRGIDVPEVDYVINYDLPMMPEDYVHRIGRTGRAGARGYAVSFVTPDTRNLLKSIQKFI 383 Query: 365 KLTIPEVE-LPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLET 423 TI ++ + + + + A V + + + + + + + Sbjct: 384 DQTIEVLDFAVSDDAMEPVGEDHALAGVVDDGKGARGGRGKKRGKDDRGRDKDRKRGRNG 443 Query: 424 LAAALLKMAQGERTLIVPPDAPMRPKREFR-DRDDRGPRDRNDRGPRGDREDRPRRERRD 482 A+G++ A R + D +R D + + Sbjct: 444 KRGKRDDDARGKKAKKDRRKASKADGRSEGFEHVDVHRDERFDADFDAKFNKKSNAAFAE 503 Query: 483 VGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVL 542 D + R + + G S R + Sbjct: 504 GRDEKRSRKNGDKKHHGKGFGKDGKKKKRAGASDRD----------------RAALNAAA 547 Query: 543 QHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERREGGRGDGR 602 F R + A + G FG R S ++ +G +G G+ Sbjct: 548 DSFGGGRSPRPKGDHTYDYAAFSKPKRPKAPKGERFGDSSRFDDERPSFKKHDGRKGFGK 607 Query: 603 RFSGERREGRAPRRDDSTGRRR------FGGDA 629 S +R + R DD GR+ FG DA Sbjct: 608 GASSDRGKNDRYRSDDRFGRKDSKPSNGFGRDA 640 Score = 52.0 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 38/260 (14%), Positives = 65/260 (25%), Gaps = 25/260 (9%) Query: 374 PNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAALLKMAQ 433 E + R E+F A + + + + G++ K + Sbjct: 472 EGFEHVDVHRDERFDADFDAKFNKKSNAAFAEGRDEKRSRKNGDKKHHGKGFGKDGKKKK 531 Query: 434 GERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDMQLYRIE- 492 A F P+ + + + + + R + Sbjct: 532 RAGASDRDRAALNAAADSFGGGRSPRPKGDHTYDYAAFSKPKRPKAPKGERFGDSSRFDD 591 Query: 493 ---VGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTRTR 549 + GA ++ G + Sbjct: 592 ERPSFKKHDGRKGFGKGASSDRGKNDRYR-------------------SDDRFGRKDSKP 632 Query: 550 ILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERREGGRGDGRRFSGERR 609 + + GDA+ E + GRGFG RR G S RR+ + SG Sbjct: 633 SNGFGRDAKRGGDARDRKPFESK-VGRGFGSARRSEGEGRSFGRRDRDSQGAWKRSGRPS 691 Query: 610 EGRAPRRDDSTGRRRFGGDA 629 G P GR + GG A Sbjct: 692 MGSRPN-GGRPGRPKRGGSA 710 >UniRef50_D1I3Q7 Whole genome shotgun sequence of line PN40024, scaffold_16.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1I3Q7_VITVI Length = 916 Score = 556 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 139/391 (35%), Positives = 207/391 (52%), Gaps = 20/391 (5%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 + + FA++ L + + + Y KP+PIQ IP + GRD++ AQTGSGKTAAF Sbjct: 416 IPPPVSAFAEIHLGEGLNQNIRRCKYVKPTPIQRHAIPIAMAGRDLMACAQTGSGKTAAF 475 Query: 61 SLPLLQNLDPEL--------KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGG 112 P++ + P L+L+PTREL+ Q+ E FS + G+ VV YGG Sbjct: 476 CFPIICGILRNQLSRGGARLACPTALILSPTRELSCQIHEEAKKFS-YKTGLKVVVAYGG 534 Query: 113 QRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVET 172 Q R L +G I+V TPGRL+D ++R + L + L LDEAD ML MGF + Sbjct: 535 APISQQFRNLERGVDILVATPGRLVDMIERARVSLRMIKYLALDEADRMLDMGFEPQIRK 594 Query: 173 IMAQI----PEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVW 228 I+ Q+ P QT LFSAT P I+R+ F+ + + ++ I Q V Sbjct: 595 IVEQMDMPPPGARQTMLFSATFPNEIQRLAADFLSNYIFLSVGRVGSSTDLIVQRVEFVE 654 Query: 229 GMRKNEALVRFLEAEDFDAA-------IIFVRTKNATLEVAEALERNGYNSAALNGDMNQ 281 K L+ L+++ + ++FV TK + + L NG + A++GD Q Sbjct: 655 DTDKRYHLMDLLQSQMTNRTPKKYALTLVFVETKRGVDALEQWLCMNGLAATAIHGDKVQ 714 Query: 282 ALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGR 341 RE+ L+ K G I++ATDVAARGLD+ ++ V+N+D+P + YVHRIGRTGRAG+ Sbjct: 715 MERERALKSFKSGATPIMVATDVAARGLDIPHVAHVINFDLPKAIDDYVHRIGRTGRAGK 774 Query: 342 AGRALLFVENRERRLLRNIERTMKLTIPEVE 372 +G A F + L +++ M+ + EV Sbjct: 775 SGLATAFFNDGNLSLAKSLVELMQESNQEVP 805 >UniRef50_B8FPB9 DEAD/DEAH box helicase domain protein n=12 Tax=Bacteria RepID=B8FPB9_DESHD Length = 428 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 159/422 (37%), Positives = 245/422 (58%), Gaps = 7/422 (1%) Query: 9 ADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNL 68 +L + PI +AL GY + +PIQAE IPHLL G D+LG AQTG+GKTAAF++P+LQ+L Sbjct: 7 NELKIINPIQKALAAQGYSEATPIQAEAIPHLLEGLDLLGCAQTGTGKTAAFAIPILQSL 66 Query: 69 ------DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 + + LVLAPTRELA Q+AE+ T + ++ + + ++GG Q R L Sbjct: 67 AMGQGLLKGKRQIRALVLAPTRELATQIAESFTAYGVNLP-LRTLVIFGGVGQAPQTRKL 125 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 +G I+V TPGRLLD + +G +DLS + VLDE D+ML MG + DV+ I+ +P Q Sbjct: 126 EKGIDILVATPGRLLDLINQGFIDLSHVEHFVLDETDQMLDMGMLHDVKRIITYLPRERQ 185 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 LFSATMP I ++ +K P ++ + + I Q + V K L +L+ Sbjct: 186 NMLFSATMPVEIEKLADTILKGPVKIAMTPEFSPLDIIEQEVYFVDKANKAALLTYWLKN 245 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 ++D+ ++F RTK+ ++ + L + G+ + A++G+ +QA REQ L K + IL+AT Sbjct: 246 NEYDSVLVFSRTKHGADKIVKELNKKGFTAVAIHGNKSQANREQALHAFKKRKTRILVAT 305 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 D+AARGLD++ +S V+NY++P E+Y+HRIGRTGRAG G+A+ F + E+ LLR+I++ Sbjct: 306 DIAARGLDIQELSHVINYNLPEVPETYIHRIGRTGRAGLGGKAITFCDFEEKPLLRDIQK 365 Query: 363 TMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLE 422 + T+PEV+ L+ + K Q + Q A + + Sbjct: 366 RIGKTLPEVKEHPYPLVNTVIVPKAKTSQQAAAARPQKPATAKTAAYSQQGAHRAKPNPR 425 Query: 423 TL 424 + Sbjct: 426 KI 427 >UniRef50_C0ZI64 Putative ATP-dependent RNA helicase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZI64_BREBN Length = 493 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 175/483 (36%), Positives = 273/483 (56%), Gaps = 11/483 (2%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 +FA G + +++ + DL Y++P+ IQ E IP ++ G+D++G AQTG+GKTAAF LP Sbjct: 1 MAKSFASFGFRPELMQGIQDLYYKEPTQIQEEAIPLIMEGKDLIGQAQTGTGKTAAFMLP 60 Query: 64 LLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 +L LD + Q L+L PTREL++Q+A+ + KH+ VNV++L+GG D QL L+ Sbjct: 61 ILNALDEGKRDIQALILTPTRELSIQIAKEVEKLGKHL-NVNVLSLHGGTDIDKQLSKLK 119 Query: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183 + QIVVGTPGR+LDH+KRG+L ++S LVLDEAD+M+ MGF+EDVE ++ P Q Sbjct: 120 ETVQIVVGTPGRVLDHMKRGSLHFGRISTLVLDEADKMMEMGFLEDVEQVIVHTPSQRQV 179 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAE 243 LFSATMP+ ++++ RFMK+P ++I+ T I Q Y+ V K +ALV LE E Sbjct: 180 LLFSATMPDLVKKLAHRFMKQPPHIKIEGKQKTVERIEQFYYVVNQSDKTDALVDVLEQE 239 Query: 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 303 I+F T+ ++ L+ NG ++ AL GD++Q REQ +++ ++ R LIATD Sbjct: 240 QPFLTIVFANTQVRVQQLTARLQENGLSAKALYGDLSQNKREQLMKQFREIRFQFLIATD 299 Query: 304 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 363 +AARGLDVE ++ V+NYD+P D +SY+HR+GRTGRAG+ G+A+ + R++ L+ + Sbjct: 300 IAARGLDVEGVTHVINYDLPNDVDSYIHRVGRTGRAGQKGKAISLISPRQKNLMARFAKA 359 Query: 364 MKLTIPEVELPNAELLGKRRLEKFAAKVQQQLE----------SSDLDQYRALLSKIQPT 413 K +I E L L R ++ + +E ++ + I+ Sbjct: 360 TKASIEERILQEGRHLDAGRRQRAEEREAHFIELRAQQAKEQQKEKDKEFSPVREAIKKK 419 Query: 414 AEGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDRE 473 + + + +A L + +A K + + R + Sbjct: 420 TKVKPGYKKKMARELGDLQTQYEKNRKKAEAIAARKAGKSAKPADAKKAGKGGAARSAKG 479 Query: 474 DRP 476 RP Sbjct: 480 GRP 482 >UniRef50_D2QY81 DEAD/DEAH box helicase domain protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2QY81_9PLAN Length = 458 Score = 555 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 173/449 (38%), Positives = 255/449 (56%), Gaps = 4/449 (0%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 + TFA + L ++ AL GYE P+PIQA IP L G DV+G A+TG+GKTA+F +P Sbjct: 10 PKPTFASMDLSDQMMAALEKAGYEYPTPIQAGLIPRALEGVDVVGQARTGTGKTASFVIP 69 Query: 64 LLQNLDPELKAP--QILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 +L+ LD E AP Q L+L PTRELAVQV + + S+ ++ +N A+YGG+ Q+ Sbjct: 70 ILELLDIERGAPTPQALILVPTRELAVQVRDEVVKLSEGLK-INCAAVYGGKPIKSQVDK 128 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 L++G +VVGTPGR+LDH+ RGT+D + + +VLDEAD ML +GF D+E I+ + P Sbjct: 129 LKKGCHVVVGTPGRVLDHIARGTIDFTHIECVVLDEADRMLDIGFRPDIERILKRCPRER 188 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 QT L SAT+P I ++ +R+M EP+ + + + I Q Y+TV RK + L++ L Sbjct: 189 QTLLLSATVPPPIAKLAQRYMYEPEMLNFSPADVSVDTIEQKYFTVEHDRKFDLLMKLLL 248 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 E+ AI+F RTK T +V + L + N+AA++GD++Q R++ + +DG + L+A Sbjct: 249 REEPKQAIVFCRTKRGTDKVYQKLTKKLGNTAAIHGDLSQGQRDRVMAGFRDGSVRYLVA 308 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 TDV RG+DV +S +VN+DIP+ + YVHR+GRTGR GR G A FV E L IE Sbjct: 309 TDVIGRGIDVSTVSHIVNFDIPVFCDDYVHRVGRTGRMGREGVAYTFVCPDEGHELTRIE 368 Query: 362 RTMKLTIPEVELPNAELLG-KRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELD 420 + + E+ + E +G R + A Q + + A +A E D Sbjct: 369 ERINKLLKRDEMRDFEPVGYGERSARAPAAPTQVISGKYMHGGNASGVAPTESATPSEGD 428 Query: 421 LETLAAALLKMAQGERTLIVPPDAPMRPK 449 AA + + L R Sbjct: 429 SPAAEAAPAATEKRDSGLGKRGGKKYRRA 457 >UniRef50_A5UZK3 DEAD/DEAH box helicase domain protein n=8 Tax=Bacteria RepID=A5UZK3_ROSS1 Length = 467 Score = 555 bits (1431), Expect = e-156, Method: Composition-based stats. Identities = 177/481 (36%), Positives = 253/481 (52%), Gaps = 15/481 (3%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 +F I + DLGY P+PIQ + IPH L+GRDV+G+AQTG+GKTAAF LP+L Sbjct: 1 MSFDSFRFHPQITAGIRDLGYHTPTPIQEQVIPHALDGRDVIGIAQTGTGKTAAFVLPIL 60 Query: 66 QNLDPELKA-PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 Q L + + +++ PTRELA Q+ + K+ G+ V LYGG Y Q++ LR+ Sbjct: 61 QRLMRGPRGRVRAMIVTPTRELAEQIQGVIEALGKYT-GLRSVTLYGGVGYQGQIQRLRR 119 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 G +I V PGRLLDHL+RGTL L L L+LDEAD+M MGF+ DV I+ P QT Sbjct: 120 GVEIAVVCPGRLLDHLERGTLTLEHLDMLILDEADQMFDMGFLPDVRRILRLAPAQRQTM 179 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 LFSATMP+AIR + R ++EPQ ++I ++ + + V K L+ L D Sbjct: 180 LFSATMPDAIRALAREALREPQTIQIGR-SAPVSTVTHAIYPVAEHLKTALLIELLRHTD 238 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 + +IF RTK+ +++ L R GY + AL G+M+Q R+ L+ + GR IL+ATD+ Sbjct: 239 TGSVLIFTRTKHRAQHLSDTLARMGYRATALQGNMSQNRRQAALDGFRSGRYQILVATDI 298 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 AARG+DV IS V+NYD+P +E+Y HRIGRTGRA R G A V + ++R IER + Sbjct: 299 AARGIDVAHISHVINYDMPQTAEAYTHRIGRTGRAARTGDAFTLVTRSDTGMVRAIERLI 358 Query: 365 KLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETL 424 + +P + AA S ++ A+ +P ++ E Sbjct: 359 GEPLKRETVPGFDY--------HAAAPAHDARSDHAPRHHAMPRHYEPHSQDE----RDN 406 Query: 425 AAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVG 484 A AQ R+ P ++ R + PR R+ + R Sbjct: 407 RAPRRHDAQERRSDTAPRRRDVQEWRSDAAPNRHKPRSRDTSARSTRADRSDRTVSGRRR 466 Query: 485 D 485 Sbjct: 467 P 467 >UniRef50_Q4TVV3 Probable ATP-dependent RNA helicase DDX46 n=18 Tax=Eumetazoa RepID=DDX46_DANRE Length = 1018 Score = 555 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 148/468 (31%), Positives = 237/468 (50%), Gaps = 11/468 (2%) Query: 2 AEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFS 61 + T+ G+ +L AL YEKP+PIQA+ IP +++GRD++G+A+TGSGKT AF Sbjct: 336 PKPIKTWVQCGISMKVLNALKKHNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFL 395 Query: 62 LPLLQNLDPEL-----KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYD 116 LP+ +++ + + P +++ PTRELA+Q+ + FSK + + VV +YGG Sbjct: 396 LPMFRHILDQRPVGEAEGPLAVIMTPTRELALQITKECKKFSKSLA-LRVVCVYGGTGIS 454 Query: 117 VQLRALRQGPQIVVGTPGRLLDHL---KRGTLDLSKLSGLVLDEADEMLRMGFIEDVETI 173 Q+ L++G +I+V TPGR++D L +L +++ +V+DEAD M MGF V I Sbjct: 455 EQIAELKRGAEIIVCTPGRMIDMLGANNGRVTNLRRVTYVVIDEADRMFDMGFEPQVMRI 514 Query: 174 MAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKN 233 + + QT +FSAT P + + RR + +P EV++ D+ Q + +K Sbjct: 515 VDNVRPDRQTVMFSATFPRTMEALARRILSKPVEVQVGGRSVVCSDVEQHVIVIEEEKKF 574 Query: 234 EALVRFLEAE-DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLK 292 L+ L + + IIFV + + + L + Y +L+G ++Q R+ + K Sbjct: 575 LKLLEILGHYQEKGSVIIFVDKQEHADGLLKDLMKASYPCMSLHGGIDQYDRDSIINDFK 634 Query: 293 DGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENR 352 +G +L+AT VAARGLDV+++ LVVNY P E YVHR GRTGRAG G A F+ Sbjct: 635 NGACRLLVATSVAARGLDVKQLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEG 694 Query: 353 ERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQP 412 + R +I + ++L+ V E L E+ A+ + SS + + Sbjct: 695 QARYSGDILKALELSGSSVPAE-LEQLWTNFKEQQKAEGKIIKSSSGFSGKGFKFDETEH 753 Query: 413 TAEGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGP 460 E L+ A L + L + + R +D P Sbjct: 754 ALANERKKLQKWALGLHDSDDEDTALDIDEQIESMFNSKKRVKDFSAP 801 >UniRef50_C4XQY7 ATP-dependent RNA helicase n=7 Tax=Deltaproteobacteria RepID=C4XQY7_DESMR Length = 496 Score = 555 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 164/488 (33%), Positives = 244/488 (50%), Gaps = 10/488 (2%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 +F L ++ + GYE P+PIQAE +PH++ G D++G+AQTG+GKTAAF LP+L Sbjct: 1 MSFDSFCLHDSLIANIKRAGYETPTPIQAEAVPHVMEGHDLMGLAQTGTGKTAAFLLPIL 60 Query: 66 QNLDPEL---KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 L ++P+ L+LAPTRELA Q+ + DF + R + +YGG Q+RAL Sbjct: 61 HRLITNPARTRSPRTLILAPTRELAEQIFRSTLDFMRGTR-LRATVIYGGVGMFPQVRAL 119 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 RQG ++V PGRLLDHL +G + L LVLDEAD M MGF+ D++ I+A +P Q Sbjct: 120 RQGVDVIVACPGRLLDHLNQGNVRFDGLETLVLDEADHMFDMGFLPDIKRILAALPAKRQ 179 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 T LFSATMP AI + + +P VRI + + + + V +K L+ L Sbjct: 180 TLLFSATMPPAISGLAAETLTDPVTVRIGH-LAPLSTVEHAIYPVSHNQKAPLLLHLLGE 238 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 ++ I+F RTK+ +A+ L R+G+ + L G+++Q R+ ++ + G IL+AT Sbjct: 239 AGKESVIVFTRTKHRAKNLAQQLCRSGHKATCLQGNLSQRQRQIAMDGFRRGSFQILVAT 298 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 D+AARG+DV +++ VVN+DIP +E+Y HRIGRTGRA R G+A FV + ++R IE Sbjct: 299 DIAARGIDVSQVAHVVNFDIPDTAEAYTHRIGRTGRAERDGQAHTFVTGEDMGMVRAIES 358 Query: 363 TMKLTIPEVELPNAELLGKRRLE-----KFAAKVQQQLESSDLDQYRALLSKIQPTAEGE 417 MK +P + E + AA+ +Q + Y + Sbjct: 359 HMKKPLPRRNVEGFEPEPGEFRRSAPAPRSAARPRQGYGAPRQGGYGDRQRQGDRPYGDR 418 Query: 418 ELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPR 477 A P R DR + ++R Sbjct: 419 PRGPRPEGARADSARDDRPRSDRPRSDRPAADRPRSDRPRTERQPSDERRSTFGLGGADN 478 Query: 478 RERRDVGD 485 R Sbjct: 479 RSGNQRPR 486 >UniRef50_Q3AZR1 DEAD/DEAH box helicase-like n=2 Tax=Synechococcus RepID=Q3AZR1_SYNS9 Length = 458 Score = 554 bits (1429), Expect = e-156, Method: Composition-based stats. Identities = 146/423 (34%), Positives = 229/423 (54%), Gaps = 6/423 (1%) Query: 2 AEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFS 61 TF L L A + ++ + GY P+PIQA IP +L G+D++ AQTG+GKTAAF Sbjct: 20 NNNTLTFEQLELCAETVRSIKESGYLSPTPIQALTIPEVLQGKDIMASAQTGTGKTAAFI 79 Query: 62 LPLLQNLDPELK----APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDV 117 LP+++ L E K LVL PTRELA QV + ++K++ + A++GG Sbjct: 80 LPIIELLRAEDKPKRYQVHSLVLTPTRELAAQVEASAKAYTKYLA-LRSDAVFGGVSIRP 138 Query: 118 QLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQI 177 Q++ L+ G I+V TPGRLLD + + + L LVLDEAD ML MGFI D++ ++ + Sbjct: 139 QVKRLQGGVDILVATPGRLLDLINQKMIRFDNLKVLVLDEADRMLDMGFIRDIKKVIEYL 198 Query: 178 PEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALV 237 P+ Q +FSAT I+++ + +P E++ P I RK + L Sbjct: 199 PKNRQNMMFSATFSTPIKKLALGLLNDPVEIKASVQNQAAPTIEHLVHPCDMARKVDLLC 258 Query: 238 RFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLD 297 ++ + ++F RTK+ +V + L ++A++G+ +Q R + LE K+G + Sbjct: 259 HLIKTNKWKQVLVFARTKHGADKVVKILCHQHMRASAIHGNKSQGARTRALEGFKNGDIK 318 Query: 298 ILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLL 357 IL+ATD+AARG+D+ ++ V+N D+P +E YVHRIGRTGRAG AG A+ V E LL Sbjct: 319 ILVATDIAARGIDIHQLPYVINLDLPNVAEDYVHRIGRTGRAGEAGHAISLVAAEEALLL 378 Query: 358 RNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGE 417 + IE+ + +P+V++ E + E Q+Q S + +++ Sbjct: 379 KAIEKFIGNPLPKVDVVGFEQ-KILKAEPLKQGGQRQRRPSQSARPGQKAKTNHASSQQR 437 Query: 418 ELD 420 D Sbjct: 438 RSD 440 >UniRef50_UPI0001C311D7 DEAD/DEAH box helicase domain protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C311D7 Length = 481 Score = 554 bits (1429), Expect = e-156, Method: Composition-based stats. Identities = 183/439 (41%), Positives = 257/439 (58%), Gaps = 3/439 (0%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 TTFADLGL AP+LEAL D+GYE PSPIQ + IP LL G D++G AQTGSGKTAAF LPL+ Sbjct: 2 TTFADLGLSAPVLEALRDVGYENPSPIQEQAIPPLLAGNDMIGQAQTGSGKTAAFGLPLM 61 Query: 66 QNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125 + +DP + Q LVL PTREL +QV +A+ + +G++VVA++GG Q LR G Sbjct: 62 EYVDPSDRDVQALVLTPTRELCIQVTQALRSYGAR-KGIDVVAVFGGAPIRSQQAQLRAG 120 Query: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 QIVVGT GR+ D + R +L L +VLDEADEML +GF+EDVE I+A P QTAL Sbjct: 121 GQIVVGTVGRVKDLISRHSLMLHGTRFVVLDEADEMLDLGFLEDVEKILALTPGSRQTAL 180 Query: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 FSATMP IR+++ R++ P V+++++ T + Q + K + L LE+E Sbjct: 181 FSATMPPEIRKLSERYLYNPVHVKVRAATLTVDTVEQFSLEMSQRDKPDMLGTVLESEKP 240 Query: 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 D AI+FVRTK ++ L G N AL+GDM+Q R+ + K GRL IL+ATDVA Sbjct: 241 DQAIVFVRTKIRCDQLYRTLRDRGMNVKALHGDMSQGQRDGVMLSFKSGRLPILVATDVA 300 Query: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 ARGLD+ ++ VVN+D+P + YVHRIGRTGR GR+GRA+ F +++++R + IER + Sbjct: 301 ARGLDISSVTHVVNFDVPTSPDVYVHRIGRTGRVGRSGRAITFYDSKQKRDIEAIERHTR 360 Query: 366 LTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLA 425 + + R+E + + + + + T L Sbjct: 361 TPM--APWTAGARVAALRVEVKPKRHESKPHDAAPTNGDRAATDGARTRLVVAGGLAQGI 418 Query: 426 AALLKMAQGERTLIVPPDA 444 + + ++ Sbjct: 419 EPKDLIHAITSAAGLDGES 437 >UniRef50_O97032 DjVLGB (Fragment) n=1 Tax=Dugesia japonica RepID=O97032_DUGJA Length = 781 Score = 554 bits (1429), Expect = e-156, Method: Composition-based stats. Identities = 133/429 (31%), Positives = 207/429 (48%), Gaps = 15/429 (3%) Query: 2 AEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFS 61 F +L L I + Y++P+PIQ IP +L RD++ AQTGSGKTAAF Sbjct: 180 TNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFL 239 Query: 62 LPLLQNLD---------PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGG 112 +P++ +L + P+ L+LAPTRELA+Q+ FS + + +YGG Sbjct: 240 IPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTP-LRSCVVYGG 298 Query: 113 QRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVET 172 Q+R ++ G ++V TPGRL+D +++ + L +VLDEAD ML MGF + Sbjct: 299 ADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRK 358 Query: 173 IM--AQIPE--GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVW 228 I+ + +P QT +FSAT P+ I+++ F+ + + +T I Q + Sbjct: 359 IIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQEIIYMT 418 Query: 229 GMRKNEALVRFLEAEDFD-AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQT 287 + K L + +IFV TK +A L GY ++++GD +Q RE Sbjct: 419 DVEKLNYLKNIFNTTAPNTLILIFVETKKGADSLARFLLSKGYPVSSIHGDRSQVEREAA 478 Query: 288 LERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALL 347 L ++G+ IL+AT VAARGLD+ + V+NYD+P D E YVHRIGRTGR G GRA Sbjct: 479 LSMFRNGQCPILVATAVAARGLDIPNVKHVINYDLPSDIEEYVHRIGRTGRLGNHGRATS 538 Query: 348 FVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALL 407 F ++ + ++ +K V + L + + ++ Sbjct: 539 FYVDKNNNIAIDLVDLLKEANQIVPQWLSALADELKRNSTMGSNNKRHNQRRYKNGNFGG 598 Query: 408 SKIQPTAEG 416 + Sbjct: 599 RDYRQGPSN 607 >UniRef50_B2S409 ATP-dependent RNA helicase n=3 Tax=Treponema RepID=B2S409_TREPS Length = 649 Score = 553 bits (1427), Expect = e-156, Method: Composition-based stats. Identities = 197/604 (32%), Positives = 293/604 (48%), Gaps = 17/604 (2%) Query: 2 AEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNG-RDVLGMAQTGSGKTAAF 60 +F +LGL L A+ G+ P+PIQA IP LL G +++ A+TG+GKTAAF Sbjct: 42 PSMGVSFEELGLNEQSLAAVRLKGFRCPTPIQAAAIPRLLAGDANIIAKARTGTGKTAAF 101 Query: 61 SLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 LPL+Q L + P LVL PTRELA QVA ++ + + + +YGG QLR Sbjct: 102 GLPLIQELGSPCEHPGALVLVPTRELAAQVASELSSL-RIQKIPRIHTVYGGVSIAEQLR 160 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 L QG +I+VGT GR++DH++RG+L+LS L +LDEADEML MGF+ED+E+I + + Sbjct: 161 NLEQGGEIIVGTTGRVIDHIERGSLELSYLRYFILDEADEMLNMGFVEDIESIFSHANKD 220 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 + +FSATMP I I FM + V + RP I Q W V K EALVR + Sbjct: 221 ARVLMFSATMPRQILSIASTFMGSYEVVEEVTPEEARPLIEQFMWVVRDADKIEALVRLI 280 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 + D ++F +TK VA++L+ Y+ AAL+GD+ Q+ RE+ LER + R IL+ Sbjct: 281 DVSDNFYGLVFCQTKADADTVAKSLDERHYHVAALHGDIPQSQREKILERFRTKRARILV 340 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATDVAARG+D+E I+ VVNY IP DS +Y HR+GRTGRAG G A+ FV E R + + Sbjct: 341 ATDVAARGIDIEGITHVVNYSIPHDSATYTHRVGRTGRAGSQGIAISFVRPHETRRMEYL 400 Query: 361 ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELD 420 + + +P E + ++ + + ++ L + ++ E+L Sbjct: 401 SKHCNGELKASTVPLVEHILTQKEGRIFSSLKTHLCQLLSEGVHGTFTRFAQRLLQEDLK 460 Query: 421 LETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRER 480 +A AL A + V A + D R RD P R R Sbjct: 461 AR-VAEALGTSADVPQEPNVSLVAALLQIHYGTALDPRQYRDIKTITPE------TARAR 513 Query: 481 RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGE 540 + RIE G+ + + +V I I + + + + +P+ E Sbjct: 514 PHDAEKAYVRIEYGKKSYLTRKRVVQFICALVKIPGHLVDRVDITERCAFARIPRRAAEE 573 Query: 541 VL------QHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERR 594 + + R + ++ A P G R + R S ++ Sbjct: 574 AVRLSKKRKDLPRVSFVGHASRLR--NTATPAEKSTYPRRLPSGEGLREQISRRTSSSKK 631 Query: 595 EGGR 598 G+ Sbjct: 632 ASGK 635 >UniRef50_A2EVI2 DEAD/DEAH box helicase family protein n=1 Tax=Trichomonas vaginalis RepID=A2EVI2_TRIVA Length = 598 Score = 553 bits (1426), Expect = e-156, Method: Composition-based stats. Identities = 142/378 (37%), Positives = 211/378 (55%), Gaps = 7/378 (1%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 + TF +L L I + + D +EKP+PIQ+ IP L G D++G+A+TGSGKTAAF Sbjct: 120 VPSPALTFEELNLPDTITKTITDNKWEKPTPIQSVSIPVALKGHDLIGIAKTGSGKTAAF 179 Query: 61 SLPLLQNL-----DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRY 115 +P + ++ P +LVL+PTRELA Q+AE F ++ + L+GG Sbjct: 180 LIPAMVHIGLQEPMYRGDGPIVLVLSPTRELAQQIAEVAKGFCDNLM-IRQTCLFGGAGR 238 Query: 116 DVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMA 175 Q LR P +VV TPGRL+D ++ G +++++ LVLDEAD+ML MGF + I+ Sbjct: 239 GPQANDLRHLPSLVVATPGRLIDFIEGGQCPMNRVNFLVLDEADQMLDMGFEPQIRKIIG 298 Query: 176 QIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQ-SSVTTRPDISQSYWTVWGMRKNE 234 I + QT +FSAT P+ I+++ F+ +P + I +TT +I Q K Sbjct: 299 HISKDRQTMMFSATWPKEIQQLAADFLVDPVHMIIGNKDLTTNSNIKQVITKCEEFEKLS 358 Query: 235 ALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDG 294 + L D IIF +TK T ++ E L G+ + +L+GD Q R+ L + + Sbjct: 359 KCLEVLNEHKDDKIIIFTKTKRTTDDLQENLNMKGFQAYSLHGDKAQNQRDFVLGKFRSC 418 Query: 295 RLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRER 354 + IL+ATDVAARGLDV I +V+NYD P D E+YVHRIGRT R + G A+ F + + Sbjct: 419 KKGILVATDVAARGLDVNDIDIVINYDFPGDIETYVHRIGRTARGNKEGLAVTFFTDENK 478 Query: 355 RLLRNIERTMKLTIPEVE 372 + R + + M E+ Sbjct: 479 NMSRKLAKIMTQAKQELP 496 >UniRef50_UPI000186EE68 DEAD box ATP-dependent RNA helicase, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186EE68 Length = 755 Score = 553 bits (1426), Expect = e-156, Method: Composition-based stats. Identities = 128/390 (32%), Positives = 197/390 (50%), Gaps = 26/390 (6%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 + TF + A ++ + G+ KP+ IQA+ P L+GRD++G+AQTGSGKT A+ Sbjct: 138 VPNPNQTFEESNFPANVMAVIKKQGFLKPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAY 197 Query: 61 SLPLLQNLDPEL-----KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRY 115 +LP ++ + P LVLAPTRELA Q+ DF + ++GG Sbjct: 198 ALPATVHITNQKPLSKGDGPIALVLAPTRELAQQIQSVAKDFGASCS-IRNTCIFGGAPK 256 Query: 116 DVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMA 175 Q R L +G +IV+ TPGRL+D L +GT +L + + LVLDEAD ML MGF + I+ Sbjct: 257 GSQARDLERGVEIVIATPGRLIDFLDKGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIE 316 Query: 176 QIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQS-SVTTRPDISQSYWTVWGMRKNE 234 QI Q ++SAT P+ ++ + F+ + ++ I S S+ +I Q + K Sbjct: 317 QIRPDRQVLMWSATWPKEVQTLAEDFLHDYIQINIGSLSLAANHNIRQHVEVMQDSEKEG 376 Query: 235 ALVRFLEAEDFDA---AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERL 291 L L D +IFV TK ++A +++ G+ + ++GD +Q R+ L Sbjct: 377 RLTNLLRDIGGDRNNKILIFVETKKKVDDIARLVKQEGFPAICMHGDKSQQERDHVLNEF 436 Query: 292 KDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVEN 351 + G+ +L+ATDVAARG +I YVHRIGRTGR+ + G A F Sbjct: 437 RSGKCAVLVATDVAARG----KIRH------------YVHRIGRTGRSSQMGTAFTFFTP 480 Query: 352 RERRLLRNIERTMKLTIPEVELPNAELLGK 381 + R + + ++ + ELL Sbjct: 481 QNARQAKGLVAVLEEASQPINPKVTELLAA 510 >UniRef50_Q12QV2 DEAD/DEAH box helicase-like protein n=27 Tax=Gammaproteobacteria RepID=Q12QV2_SHEDO Length = 433 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 150/402 (37%), Positives = 230/402 (57%), Gaps = 6/402 (1%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 F IL A+ + GY+ +P+Q + IP + G DVL AQTG+GKTAAF+LP+L Sbjct: 1 MKFESFSFAPEILRAIAECGYQNMTPVQQQAIPAIRRGEDVLASAQTGTGKTAAFALPIL 60 Query: 66 QNLDPELKAPQ-----ILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 Q + Q L+L PTRELA QVA+ ++ +SKHM ++V+ +YGG + Q + Sbjct: 61 QKMHERPMTVQHSNARALILTPTRELAAQVADNISAYSKHM-NISVLTIYGGMKMATQAQ 119 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 L+QG I+V TPGRLL+H+ L LS + LVLDEAD ML MGF D++ I+ + + Sbjct: 120 KLKQGADIIVATPGRLLEHIVACNLSLSNVEFLVLDEADRMLDMGFSTDIQKILQAVNKK 179 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 Q LFSAT A++++ + +P+ + TT +SQ + V RK E L + Sbjct: 180 RQNLLFSATFSTAVKKLANDMLDKPKIISADKQNTTAATVSQVVYPVEQRRKRELLSELI 239 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 +++ ++F T+ ++ L +G SA ++G+ Q R + L +G++ +L+ Sbjct: 240 GTKNWQQVLVFTATRADADKLVTELNLDGIPSAVVHGEKAQGSRRRALREFIEGKVRVLV 299 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 AT+VAARGLD++ + VVNYD+P +E YVHRIGRTGRAG+ G A+ FV E R L +I Sbjct: 300 ATEVAARGLDIQGLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEERTLADI 359 Query: 361 ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQ 402 E+ + I + +P E+ + L K K + + + + Sbjct: 360 EKLIGQKIRRITVPGYEVSSRELLLKTIEKRRSFGKKQERND 401 >UniRef50_C4V8Q7 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01 RepID=C4V8Q7_NOSCE Length = 528 Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 131/379 (34%), Positives = 202/379 (53%), Gaps = 8/379 (2%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 + F + +L + P+PIQA+ P L G+D++G+AQTGSGKT +F Sbjct: 122 VPHPYVKFEHAPFENEVLNNFKLKAFTSPTPIQAQGWPMALTGKDMVGIAQTGSGKTLSF 181 Query: 61 SLPLLQNLDPE-----LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRY 115 LP L + + P +LVLAPTREL +Q+ + ++ + + A+YGG Sbjct: 182 VLPALIHARAQIPLRSGDGPIVLVLAPTRELCLQIKDVFDEYCRFF-NMRCTAVYGGVSS 240 Query: 116 DVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMA 175 Q R + G ++VVG PGRL+D ++G L ++++ LVLDEAD ML MGF ++ I+ Sbjct: 241 YTQKRDISMGCEVVVGCPGRLIDLNEQGALHFNRVTFLVLDEADRMLDMGFEPQLKKIIV 300 Query: 176 QIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSV-TTRPDISQSYWTVWGMRKNE 234 QT ++SAT P+ +RR+ +MK ++ I S T I Q + K Sbjct: 301 NTNPDRQTLMWSATWPKEVRRLAENYMKNFVQLTIGSVELKTNIKIKQIVSVIDSHEKAN 360 Query: 235 ALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDG 294 L L + + IIF TK + + L R GY + A++GD +Q +R++ + + G Sbjct: 361 KLHESLNEKKNEKVIIFANTKRMCDNLEDDLSRRGYKAVAIHGDKSQNIRDRIISDFRSG 420 Query: 295 RLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAG-RAGRALLFVENRE 353 +ILIATDVAARGLD++ ++LV+NYD P + E YVHRIGRT R G + F + Sbjct: 421 YKNILIATDVAARGLDIKNVALVINYDFPNNIEDYVHRIGRTARGDVTEGLSHSFFTSEN 480 Query: 354 RRLLRNIERTMKLTIPEVE 372 + + + +K +V Sbjct: 481 SACAKELVKILKEANQDVP 499 >UniRef50_C8WL27 DEAD/DEAH box helicase domain protein n=3 Tax=Eggerthella lenta DSM 2243 RepID=C8WL27_EGGLE Length = 508 Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 174/518 (33%), Positives = 258/518 (49%), Gaps = 24/518 (4%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 FADLGL L A+ LGYE P+P+Q + IP +L GRD++ A TG+GKTAAF LP+L Sbjct: 2 QNFADLGLSEAALAAVERLGYENPTPVQLQAIPLVLEGRDLIAAASTGTGKTAAFLLPIL 61 Query: 66 QNLDPELKA---PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 L + P++LV++PTRELA Q+++ ++ G V ++GG Y Q+ + Sbjct: 62 STLPRGKRGKRAPRVLVVSPTRELAQQISQTCMQITRKT-GHYVTTVFGGTPYGPQINEI 120 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 R+G +++ TPGRL D + +G +DL + LVLDEAD ML MGF+ V TI+ P Q Sbjct: 121 RRGTDVLIATPGRLNDLMNKGVVDLGGIKSLVLDEADRMLDMGFLPAVTTIVDATPADRQ 180 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 T LFSAT+ +I++ + +P V I + T + Q + +K E L LE Sbjct: 181 TLLFSATIDHSIQKNLGSLLNDPAVVEIARNGETAQTVEQFMMPIANFKKPELLQALLEE 240 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 + D I+F RTKN T + AEAL GY + +++ D +Q R++ L+ + GR IL+AT Sbjct: 241 KGSDRVIVFARTKNRTEDCAEALCDAGYRAESIHSDKSQGQRKRALDNFRRGRTSILVAT 300 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 DV ARG+DV + V+N+D+P E YVHRIGRTGRAG G A+ FV RR + +IE+ Sbjct: 301 DVLARGIDVPDVDHVINFDLPDMPEDYVHRIGRTGRAGEQGFAVSFVTRESRRTMSDIEK 360 Query: 363 TMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLE 422 + +P +EL EL + ++ + R +K GE+ D E Sbjct: 361 LIGKNVPLMELETYELDMTVLEKGKKGAPKKGGYKGNKGSGRPAGAKRSDKRGGEKRDFE 420 Query: 423 TLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRD 482 + R + +R RG R R G + R Sbjct: 421 -------------------RRSDSRAEGRSDNRPGRGKRAEGKRSFDGAAKPDGPRSNNM 461 Query: 483 VGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIG 520 + + + + + GA G +G Sbjct: 462 DHAKRRLEMNEKKREKSAP-NAKGAAKQNGSKKKAGVG 498 >UniRef50_Q1J0S9 DEAD/DEAH box helicase-like protein n=2 Tax=Deinococcus RepID=Q1J0S9_DEIGD Length = 591 Score = 551 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 205/621 (33%), Positives = 307/621 (49%), Gaps = 69/621 (11%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 F L + + L + G + SPIQAE +PH L G+D++G A+TG+GKT AF+LP++ Sbjct: 1 MNFDQL-IAPELAARLAERGITEASPIQAESLPHTLAGKDLIGRARTGTGKTLAFALPII 59 Query: 66 QNLDP--------ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDV 117 QNL + P+ +V+APTRELA QVAE FSK ++ V +YGG Y Sbjct: 60 QNLTAPDGRGSRERGRLPRAIVIAPTRELAKQVAEE---FSKSGPQLSTVTVYGGAAYGP 116 Query: 118 QLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQI 177 Q ALR+G +VVGTPGRL+DHL+RG LDLS + VLDEADEML +GF + +ETI+ Q Sbjct: 117 QENALRRGVDVVVGTPGRLIDHLERGNLDLSAIQYAVLDEADEMLSVGFADAIETILQQT 176 Query: 178 PEGHQTALFSATMPEAIRRITRRFMKEPQEVRI--QSSVTTRPDISQSYWTVWGMRKNEA 235 P QT LFSAT+ + I R+ R++++EP V + + + V G + Sbjct: 177 PAARQTMLFSATLNDEIHRLARKYLREPVVVDLVGEGKSQAAQSVEHLKVKV-GRTRTRV 235 Query: 236 LVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGR 295 L L + + AI+F RTK E+A L G S AL+GD+ Q+ RE+ L + GR Sbjct: 236 LADLLTVYNPEKAIVFTRTKREADELANELIHRGIESEALHGDLAQSQRERALGAFRSGR 295 Query: 296 LDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERR 355 + +L+ATDVAARGLD+ + LVV Y +P D ESYVHR GRTGRAGR G A++ +RE R Sbjct: 296 VGVLVATDVAARGLDIPEVDLVVQYHLPQDPESYVHRSGRTGRAGRTGTAIVMYGDRENR 355 Query: 356 LLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAE 415 LRN+E + E LP + + + +A + ++++S ++A ++ Sbjct: 356 ELRNLEYRTGVQFKERPLPTPKEVQAA-SARASADLVRKVDSGVAATFQAEAERLF---- 410 Query: 416 GEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDR 475 EL LE LA AL K++ + Sbjct: 411 -SELGLEALARALAKISGVTEPVQAASLLSGEEG-------------------------- 443 Query: 476 PRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPK 535 + R + + V V +A GD+ +R +G ++ + + ++P Sbjct: 444 -------------LTTLILRGERLSVPRTVALLARSGDVDTRRLGKVRQWRGGTVADVPS 490 Query: 536 GMPGEVLQHFTRTRILNKPMNMQLLGD-----AQPHTGGERRGGGRGFGGERREGGRNFS 590 ++L + + +++++ + P G + G G G RNF Sbjct: 491 EYVEKLLAA---SPLEG-EVHLEVAQELPELFEAPTREGRQGSYGPRTGSRDESGSRNFR 546 Query: 591 GERREGGRGDGRRFSGERREG 611 G R G +G + R G Sbjct: 547 GSRGGYGNREGGSRGSQGRWG 567 >UniRef50_C1AE59 ATP-dependent RNA helicase RhlE n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AE59_GEMAT Length = 498 Score = 551 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 163/488 (33%), Positives = 245/488 (50%), Gaps = 5/488 (1%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 TF+ L L + + L +LG+ +P+PIQ E IP L GRDVL A TGSGKT AF LP Sbjct: 1 MTMTFSSLQLHPSLQQGLKELGFARPTPIQGEAIPPALEGRDVLACAMTGSGKTYAFLLP 60 Query: 64 LLQNLDPELKA-PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 +L L + + + LVL PTRELA Q+ E++ D + H + A++GG Q A Sbjct: 61 ILHQLMSKPRGNTRALVLTPTRELAAQILESLQDVTTHTP-LTGAAVFGGVGMGPQEHAF 119 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP-EGH 181 R G ++V TPGRLLDH ++ L +L LVLDEAD ML MGF+ +++ I+ +P Sbjct: 120 RSGVDVIVATPGRLLDHFRQPYAKLDQLEYLVLDEADRMLDMGFLPEIKKILRHLPNRKR 179 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 QT FSATMP I +T+ + +P + +Q I+Q+ + V K+ LV L+ Sbjct: 180 QTLFFSATMPPPIAALTQEMLNKPVTLNLQRQAAPAKGITQAVYPVSQELKSALLVALLK 239 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 D A++F RTK+ +A L G + ++G+ +Q+ R Q L KDG +L+A Sbjct: 240 RGDMPQALVFTRTKHRANRLASQLVTAGIKAERIHGNRSQSQRTQALAGFKDGSYQVLVA 299 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 TD+AARG+DVE + VVN+D+P+ +E Y+HR+GRT RA G A FV E L+ IE Sbjct: 300 TDIAARGIDVEALGHVVNFDVPVAAEDYIHRVGRTARAEATGEAFTFVSPEEEGELKLIE 359 Query: 362 RTMKLTIPEVELPNAELLGK--RRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEL 419 R +K +P V +P+ + K ++LE A+ ++ + +K+ +E Sbjct: 360 RAIKRALPRVTVPDFDYHAKPTQKLEVPIAERIAEIRKKKAEDRARAAAKVARRTAAQES 419 Query: 420 DLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRE 479 + +A K + G + P + Sbjct: 420 EAARKSAKDAKPSSGGASSGSRRRGPASGGGTGGAAGGGAAGGSGAPRGPARGPSKGPAR 479 Query: 480 RRDVGDMQ 487 G + Sbjct: 480 GASRGPSR 487 >UniRef50_D0MZ17 DEAD/DEAH box RNA helicase, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0MZ17_PHYIN Length = 2091 Score = 551 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 143/463 (30%), Positives = 230/463 (49%), Gaps = 18/463 (3%) Query: 2 AEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFS 61 + G +L+ + GYE+P IQ + +P +++GRDV+G+A+TGSGKT AF Sbjct: 1486 PRPLQKWTQCGFSVRMLQLIKKHGYEEPFAIQKQALPAIMSGRDVIGIAKTGSGKTLAFL 1545 Query: 62 LPLLQNLDPEL-----KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYD 116 LP+ +++ + + P +++AP RELA Q+ FSK + G+ A+YGG Sbjct: 1546 LPMFRHVLAQPPLQENEGPIGIIMAPARELAQQIYVEARKFSKGL-GLRATAVYGGSSVS 1604 Query: 117 VQLRALRQGPQIVVGTPGRLLDHL---KRGTLDLSKLSGLVLDEADEMLRMGFIEDVETI 173 Q+ L++G IV+ TPGR++D L + L +++ +VLDEAD M MGF + I Sbjct: 1605 EQIANLKRGSDIVICTPGRMIDILCMSAGKMVSLQRVTYVVLDEADRMFDMGFEPQITKI 1664 Query: 174 MAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKN 233 M I QT LFSAT P ++ + R+ +K+P E+ + + T DI+Q K Sbjct: 1665 MMNIRPDRQTLLFSATFPRSVESLARKVLKKPVEITVGTRSTASGDITQYVEVREEDDKF 1724 Query: 234 EALVRFLE-AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLK 292 L++ L + ++FV + A ++ + L + GY + +L+G +Q R+ T++ K Sbjct: 1725 MRLLQLLGLWYEKGNILVFVNKQQACDQIFQDLMKAGYPALSLHGGKDQVDRDYTIDDFK 1784 Query: 293 DGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENR 352 +++AT VA RGLDV+ + LV+NY P E YVHR+GRTGRAGR G A F+ Sbjct: 1785 RKVRTVMVATSVAGRGLDVKDLVLVINYHCPNHMEDYVHRVGRTGRAGRKGTAYTFISPD 1844 Query: 353 ERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQP 412 E ++ + ++ + E F AKV++ ++ Sbjct: 1845 EEEYSVDLVKALENAKQTIPPE-----LTALAEGFTAKVKRGEARYHGSGFKGKGFTFDE 1899 Query: 413 TAEGEELDLETLAAALLKMAQG---ERTLIVPPDAPMRPKREF 452 T E L ++ QG E + V D P +E Sbjct: 1900 TERNETQRTADLQRRQYELDQGILVEDSGAVDDDDMEEPSKEN 1942 >UniRef50_C6CYC6 DEAD/DEAH box helicase domain protein n=89 Tax=Firmicutes RepID=C6CYC6_PAESJ Length = 578 Score = 551 bits (1420), Expect = e-155, Method: Composition-based stats. Identities = 171/451 (37%), Positives = 255/451 (56%), Gaps = 1/451 (0%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 T F +G+ + + L G P+P+Q + IP LL+G+DV+ AQTG+GKT AF+LP Sbjct: 1 MSTEFISMGIIPELTDVLQSNGITSPTPVQKKAIPVLLSGQDVIAQAQTGTGKTIAFTLP 60 Query: 64 LLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 +LQ +D + + Q L+L PTRELA+Q+ + + + G V+A YGGQ D Q+R L Sbjct: 61 ILQRIDIDKEQVQALILTPTRELAIQITSELKKLAAAV-GAKVLAAYGGQDVDAQIRKLN 119 Query: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183 P IVV TPGRL+DH++R T++L KL LVLDEAD+ML MGF+ +V+ I+ Q P QT Sbjct: 120 NSPHIVVATPGRLIDHMRRETINLGKLKMLVLDEADQMLHMGFLPEVQNIVDQTPRARQT 179 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAE 243 LFSATMP+ I+R+ +MK P +++IQS+ T +I Q + +AL+ +E + Sbjct: 180 MLFSATMPDQIKRLAENYMKTPVDIKIQSANVTLDNIKQLVIETTDRGRQKALISMIETQ 239 Query: 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 303 A+IF RTK ++ + L+ G+ S L+GD+ QA REQ ++R +D +L IL+ATD Sbjct: 240 RPYLAVIFCRTKVRAKKLNKDLQDLGFESDELHGDLTQAKREQVMKRFRDAKLQILVATD 299 Query: 304 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 363 VAARGLDVE ++ V N+D+P DSE Y+HRIGRTGRAG+ G A+ +R + +IER+ Sbjct: 300 VAARGLDVEGVTHVFNFDVPTDSEIYIHRIGRTGRAGQRGTAITIASPYDRAAVAHIERS 359 Query: 364 MKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLET 423 + + + + K + +++ + + D +P G E Sbjct: 360 INAILERRTIEADGTIVKNTAPRSSSEGKSYDKKPDRGGRGRGGRDSKPAQGGRGGRGER 419 Query: 424 LAAALLKMAQGERTLIVPPDAPMRPKREFRD 454 P A + E Sbjct: 420 NERGAGAGRSQAGGRGKPERAAVSSNAEGNP 450 >UniRef50_Q2NB74 DNA and RNA helicase n=7 Tax=Alphaproteobacteria RepID=Q2NB74_ERYLH Length = 492 Score = 551 bits (1420), Expect = e-155, Method: Composition-based stats. Identities = 159/469 (33%), Positives = 240/469 (51%), Gaps = 16/469 (3%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 TTF LGL P+L+AL+ GY +P+PIQA+ IP +L GRD+LG+AQTG+GKTAAF LP Sbjct: 2 TITTFDQLGLSQPVLQALDMKGYNEPTPIQAQAIPPVLEGRDLLGIAQTGTGKTAAFMLP 61 Query: 64 LLQNLDPELKAP-----QILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQ 118 + L ++LVLAPTRELA Q+A++ D+ M G+ V ++ GG Sbjct: 62 SIDRLREADNQTPFKSCRMLVLAPTRELAGQIAQSAKDYGA-MAGLKVHSIVGGTSVGKD 120 Query: 119 LRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP 178 L +G I+V TPGRLLD + + L+ + LVLDEAD+ML +GFI + I +P Sbjct: 121 RNKLHRGTDILVATPGRLLDLIDQKAFKLNAVEILVLDEADQMLDLGFIHALRQINDLVP 180 Query: 179 EGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVR 238 QT FSATMP+ I+ + ++ + P +V + + TT I Q + V K + Sbjct: 181 AERQTLFFSATMPKQIQELVGKYCRNPVKVSVTPAATTAERIDQYLFMVQQDEKQALIEM 240 Query: 239 FLEAE-----DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKD 293 L+ + ++F RTK+ V + L + G S A++G+ +Q R++ L+ K Sbjct: 241 ILKGRHAVPGKQERILVFTRTKHGADRVVKKLRQAGIESNAIHGNKSQPQRQRALDEFKR 300 Query: 294 GRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRE 353 + ILIATDVAARG+D+ +S V+NY++P E YVHRIGRT RAG+ G A+ F E Sbjct: 301 AKTPILIATDVAARGIDIPGVSHVINYELPNVPEQYVHRIGRTARAGKDGVAIAFCAEDE 360 Query: 354 RRLLRNIERTMKLTIPEVELPN-----AELLGKRRLEKFAAKVQQQLESSDLDQYRALLS 408 R L++I++ + LP E +G + E+ + + + Q S Sbjct: 361 RAYLKDIQKNTDAEFDRLPLPENFRAVVEGVGPTKREQKQRGPRIKPKPKARKQGGTNRS 420 Query: 409 KIQPTAEGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDD 457 K Q ++ + + + + Sbjct: 421 KPQGGNPQSAGGPVENPVKKQGTSKQKHPARKGRPGGRPGGQRPQGAER 469 >UniRef50_B3M5L4 GF23818 n=1 Tax=Drosophila ananassae RepID=B3M5L4_DROAN Length = 795 Score = 550 bits (1419), Expect = e-155, Method: Composition-based stats. Identities = 161/486 (33%), Positives = 243/486 (50%), Gaps = 9/486 (1%) Query: 2 AEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFS 61 + T+F G P+L+A+ Y +P+PIQA+ +P L+GRD++G+A+TGSGKTAAF Sbjct: 261 PKPVTSFGHFGFDEPLLKAVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFI 320 Query: 62 LPLLQNLDPEL-----KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYD 116 PLL +L + P L+LAPTREL++Q+ F K + +NVV YGG Sbjct: 321 WPLLMHLMDQKELQPGDGPIGLILAPTRELSLQIYNEAKKFGK-VYNLNVVCCYGGGSKW 379 Query: 117 VQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQ 176 Q +AL QG +IVV TPGR++D +K +L +++ LVLDEAD M MGF V +I Sbjct: 380 EQSKALEQGAEIVVATPGRMIDMVKMKATNLKRVTFLVLDEADRMFHMGFEPQVRSICNH 439 Query: 177 IPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVW-GMRKNE- 234 + QT LFSAT + I R+ R + +P + DI+QS + ++K Sbjct: 440 VRPDRQTLLFSATFKKRIERLARDVLTDPVRIVQGDLNEANQDITQSVFVFPNPLQKWNW 499 Query: 235 ALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDG 294 L ++ + +IFV K VA L YN L+GDM+QA R + + + K Sbjct: 500 LLCHLVKFLSEGSVLIFVTKKADAETVANNLLVKEYNCLLLHGDMDQADRNKVITQFKKK 559 Query: 295 RLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRER 354 DIL+ATDVAARGLD+ I VVNYDI D +++ HRIGRTGRAG G A V ++++ Sbjct: 560 ECDILVATDVAARGLDIPHIRNVVNYDIARDIDTHTHRIGRTGRAGEKGNAFTLVTDKDK 619 Query: 355 RLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTA 414 ++ R ++ +V EL K + +++ +Q + Y L + + Sbjct: 620 EFAGHLVRNLEGADQQVPEDLMELAMKSSWFR-SSRFKQGKGRKPANTYTGLGYRERGNG 678 Query: 415 EGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDRED 474 G + + + + +P DR R + + + Sbjct: 679 PGAGSGSGSGTGSGSGSSGASASTSGGEGPSSKPISAAGPATDRYAAMREAFRSQYNSQF 738 Query: 475 RPRRER 480 R +R Sbjct: 739 RASSDR 744 >UniRef50_B7QFN5 ATP-dependent RNA helicase, putative n=1 Tax=Ixodes scapularis RepID=B7QFN5_IXOSC Length = 519 Score = 550 bits (1419), Expect = e-155, Method: Composition-based stats. Identities = 144/406 (35%), Positives = 216/406 (53%), Gaps = 9/406 (2%) Query: 2 AEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFS 61 T + P E + +PSPIQA+ P +L GRD++G+AQTGSGKT A+ Sbjct: 90 PRPVLTLDECNFPEPCRELFRSKNFTEPSPIQAQAWPVVLGGRDLVGIAQTGSGKTLAYV 149 Query: 62 LPLLQNLDPEL-----KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYD 116 LP ++ + + P +VLAPTREL Q+++ ++ + +YGG Sbjct: 150 LPAAIHMSDQPQPERDEGPIGVVLAPTRELVQQISQVAYEWCGGAFRLKGAPVYGGVSKG 209 Query: 117 VQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQ 176 Q+ L+ G I + TPGRLLD L+ G ++L + S LVLDEAD ML MGF + I+ Q Sbjct: 210 PQIARLQGGAHICIATPGRLLDILETGAINLLRCSYLVLDEADRMLDMGFEPQIRKIVDQ 269 Query: 177 IPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVT-TRPDISQSYWTVWGMRKNEA 235 QT ++SAT P +R + F+ + ++ + S +I Q G K E Sbjct: 270 TRPDRQTVMWSATWPSEVRDLAEEFLTDHVQITVGSEDLCANHNIRQVVHVCQGFEKEEK 329 Query: 236 LVRFLEA---EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLK 292 L+ L E +IFV TK + + + L +NG+ + A +GD++Q R+ L+R + Sbjct: 330 LLETLREINAEGDQRTLIFVATKARVVTIVQNLYKNGFRAVATHGDLSQNKRDIALDRFR 389 Query: 293 DGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENR 352 G+ IL+ATDVAARGLDV I V+NYD P SESYVHRIGRTGR+ R+G A+ Sbjct: 390 SGKTPILVATDVAARGLDVSDIKYVINYDYPDTSESYVHRIGRTGRSNRSGTAITLFTPD 449 Query: 353 ERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESS 398 + + ++ EV EL+ ++ +KFA + ++ + S Sbjct: 450 NAGQAKQLVSVLQEAKQEVNPELLELVDRQVSQKFANRRRRPAQQS 495 >UniRef50_Q9M2F9 DEAD-box ATP-dependent RNA helicase 52 n=13 Tax=Eukaryota RepID=RH52_ARATH Length = 646 Score = 550 bits (1419), Expect = e-155, Method: Composition-based stats. Identities = 146/393 (37%), Positives = 208/393 (52%), Gaps = 22/393 (5%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 + TFA++ L + + Y KP+P+Q IP L GRD++ AQTGSGKTAAF Sbjct: 141 VPPPVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAF 200 Query: 61 SLPLL------QNLDPELK----APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALY 110 P++ Q+++ P ++L+PTRELA Q+ + FS + GV VV Y Sbjct: 201 CFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFS-YQTGVKVVVAY 259 Query: 111 GGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDV 170 GG + Q+R L +G I+V TPGRL D L+RG + L + L LDEAD ML MGF + Sbjct: 260 GGTPVNQQIRELERGVDILVATPGRLNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQI 319 Query: 171 ETIMAQI----PEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWT 226 I+ Q+ P QT LFSAT P I+R+ F+ + + ++ I Q Sbjct: 320 RKIVQQMDMPPPGVRQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEF 379 Query: 227 VWGMRKNEALVRFL--EAEDFDA-----AIIFVRTKNATLEVAEALERNGYNSAALNGDM 279 V K L+ L + E+ + ++FV TK + L NG+ + ++GD Sbjct: 380 VHDSDKRSHLMDLLHAQRENGNQGKQALTLVFVETKKGADSLENWLCINGFPATTIHGDR 439 Query: 280 NQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRA 339 +Q RE L K GR IL+ATDVAARGLD+ ++ VVN+D+P D + YVHRIGRTGRA Sbjct: 440 SQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRA 499 Query: 340 GRAGRALLFVENRERRLLRNIERTMKLTIPEVE 372 G +G A F + + + + M+ EV Sbjct: 500 GNSGLATAFFNDNNTTMAKPLAELMQEANQEVP 532 >UniRef50_Q65XX1 Vasa-and belle-like helicase protein 1, isoform c n=3 Tax=Caenorhabditis elegans RepID=Q65XX1_CAEEL Length = 660 Score = 550 bits (1419), Expect = e-155, Method: Composition-based stats. Identities = 148/393 (37%), Positives = 216/393 (54%), Gaps = 22/393 (5%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 + F + G ++E +N GY KP+P+Q IP LL RD++ AQTGSGKTAAF Sbjct: 134 VPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKTAAF 193 Query: 61 SLPLLQNLDPELK---------------APQILVLAPTRELAVQVAEAMTDFSKHMRGVN 105 LP++Q++ P LVL+PTRELA+Q+ + T FS + + Sbjct: 194 LLPIIQHILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKFS-YKSNIQ 252 Query: 106 VVALYGG-QRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRM 164 LYGG + Y Q+ LR G I++ TPGRL+D +++G + L+ LVLDEAD ML M Sbjct: 253 TAILYGGRENYRDQVNRLRAGTHILIATPGRLIDIIEQGFIGLAGCRYLVLDEADRMLDM 312 Query: 165 GFIEDVETIMAQ-IPEG--HQTALFSATMPEAIRRITRRFMK-EPQEVRIQSSVTTRPDI 220 GF + I+ Q +P TA+FSAT P+ I+ + + F+K + + +T +I Sbjct: 313 GFEPQIRKIVGQGMPPKTARTTAMFSATFPKEIQVLAKDFLKDNYIFLAVGRVGSTSENI 372 Query: 221 SQSYWTVWGMRKNEALVRFL-EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDM 279 Q V M K L+ L + ++FV TK E+A L R S +++GD+ Sbjct: 373 EQRLLWVNEMEKRSNLMEILMNEHSENLVLVFVETKRGANELAYFLNRQQIRSVSIHGDL 432 Query: 280 NQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRA 339 Q RE+ LE + G+ IL+AT VAARGLD+ + V+NYD+P DS+ YVHRIGRTGR Sbjct: 433 KQIERERNLELFRSGQCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRTGRC 492 Query: 340 GRAGRALLFVENRERRLLRNIERTMKLTIPEVE 372 G G A F ++ R + R+++ + + EV Sbjct: 493 GNLGIATSFFNDKNRGIGRDLKNLIVESNQEVP 525 >UniRef50_C7MN05 DNA/RNA helicase, superfamily II n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MN05_CRYCD Length = 551 Score = 550 bits (1419), Expect = e-155, Method: Composition-based stats. Identities = 169/576 (29%), Positives = 257/576 (44%), Gaps = 27/576 (4%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 TF DLGL L A++ LGY P+P+Q + IP +L GRDV+ A+TG+GKTAAFSLP Sbjct: 1 MSKTFHDLGLSEKALAAVDLLGYTDPTPVQEQAIPAVLAGRDVIAAAKTGTGKTAAFSLP 60 Query: 64 LLQNL--DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 + L + P +L++ PTRELA+Q+ +K G V + GG Y+ Q+ + Sbjct: 61 TMDRLGHARHGQGPLLLIVTPTRELALQIESVCRTIAKR-SGHRVTCVVGGVSYNPQIDS 119 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 LR+G +++ TPGRL+D + + L+++ LVLDEAD ML MGF+ D+ I+A P Sbjct: 120 LRRGTDVLIATPGRLIDLMNQDAAHLNQVETLVLDEADRMLDMGFLPDMRRIVAACPTQR 179 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 QT LFSAT+ AI + P V I T I Q V KN+ L+ L Sbjct: 180 QTLLFSATIDSAIEDNMAHLLNNPVFVEIAHRGETADTIEQYRIPVDHRHKNDLLIALLN 239 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 I+F RT++ L + G+ ++ D +Q R++ +E L+ G+ DIL+A Sbjct: 240 ERGGTRIIVFARTRHRVDTCVRKLRKAGFAVEPIHSDRSQNQRKRAIEALEAGKCDILVA 299 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 TDV ARG+D+ ++ VVN D+P E YVHRIGRTGRAG AG A+ FV + +LR+I+ Sbjct: 300 TDVLARGIDIPNVNYVVNLDMPDQVEDYVHRIGRTGRAGEAGCAISFVTPENKAILRDIQ 359 Query: 362 RTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDL 421 + + IPE+ + + + AAK + +D + A Sbjct: 360 KLIGKDIPEMSVESFD--SSASDNALAAKATRANAQNDPELATAAREDKSRKKAKSSRSS 417 Query: 422 ETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERR 481 + A G++ P + D R RG R E Sbjct: 418 RREHNTEDQRAGGQQRGHKNPRGNKSNRNNSERHFDESERSEQQGTRRGRTRRDQRNEYE 477 Query: 482 DVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEV 541 + + G ++ A+E + + + + Sbjct: 478 NPHKTR------GTAKKQRKKNQRAGAAHESERNRKGRSANDVRGDF------------- 518 Query: 542 LQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRG 577 N + + + + R RG Sbjct: 519 ---RKGRTTSNSHGDFRPGRSQRARRDAQHRRSQRG 551 >UniRef50_UPI00016C5336 ATP-dependent RNA helicase n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C5336 Length = 523 Score = 550 bits (1419), Expect = e-155, Method: Composition-based stats. Identities = 170/436 (38%), Positives = 237/436 (54%), Gaps = 8/436 (1%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 FADL L P+++A+ GY+ P+PIQ IP L G+DV+G AQTG+GKTAAF +P L Sbjct: 88 FADLKLMRPLMDAITAAGYKNPTPIQENVIPPALRGKDVIGQAQTGTGKTAAFLIPFLNR 147 Query: 68 LDPE-LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 P LK P +V+ PTRELA+Q+A + R V +YGG QL L +G Sbjct: 148 WRPHTLKGPIGVVMTPTRELALQIANEAEKLAPSKR-FRCVPVYGGTGMQRQLDGLTRGC 206 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 +VVGTPGR+LDHL+RG++ LS++ VLDEAD ML +GF +D+E I+ + P QT L Sbjct: 207 DLVVGTPGRMLDHLQRGSMSLSQVRYAVLDEADRMLDIGFRDDIERILKRCPSERQTLLM 266 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SAT+P++I+R+ R+M++P + + T I QSY+TV RK E L R +E E Sbjct: 267 SATVPDSIKRLVNRYMRDPVHLHMMPEKPTVDKIRQSYFTVDQDRKFELLKRVVEREKPR 326 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 +IFV K + L+R +A ++GD+ Q+ RE+ + + + LIATDV + Sbjct: 327 QCLIFVERKRWADNLYRDLKRAVPKAAVIHGDLPQSQREKIMAAFRTADIKYLIATDVMS 386 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RG+DV +S V+NYD+PMD E+YVHRIGRTGR G+ G A+ FV + L NIE + Sbjct: 387 RGIDVSGLSHVINYDLPMDIENYVHRIGRTGRIGKDGIAISFVLPEQGEHLTNIEMMINR 446 Query: 367 TIPEVELPNAELLGKRRLEKFAA------KVQQQLESSDLDQYRALLSKIQPTAEGEELD 420 I E + E R A + E S P G D Sbjct: 447 LIEEDRVEGFEAAAPRASRPAAEVKVVFSGWEAAKEEKPATDDDGWGSDDAPPQSGGGND 506 Query: 421 LETLAAALLKMAQGER 436 + +R Sbjct: 507 PKKPPFGRRGKKYSQR 522 >UniRef50_B6R5V0 ATP-dependent rna helicase, dead/deah box family n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R5V0_9RHOB Length = 453 Score = 550 bits (1419), Expect = e-155, Method: Composition-based stats. Identities = 161/453 (35%), Positives = 247/453 (54%), Gaps = 11/453 (2%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 T F LG+ P AL GY +P+PIQ IP++L+G+D+LG+AQTG+GKTAAF++PLL Sbjct: 2 TDFDKLGVAKPFQIALKSKGYSEPTPIQENAIPYILDGKDLLGLAQTGTGKTAAFAVPLL 61 Query: 66 QNLD-----PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 Q L K+ + L+L PTRELA Q+ + + ++ + + + GG + Q Sbjct: 62 QRLLESRYRAAPKSVRSLILTPTRELADQITKNIKAYAGRTK-MYTSCVVGGVPFPPQFH 120 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 AL++G ++V TPGRLLD ++ + +L VLDEAD+ML +GFI ++E I +P+ Sbjct: 121 ALQRGLDVLVATPGRLLDLHRKNGVSFDELEIFVLDEADQMLDLGFIAELEEIAYLLPKK 180 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 QT FSATMP IR ++ RF+ P EV TT ++Q + K L L Sbjct: 181 RQTLFFSATMPREIRDLSERFLTNPVEVSTAPPATTVETVTQQIAHLEKDAKFPLLKELL 240 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 E ++ + A++F TK + +A L +G + A++GDM+QA R++TL++ K G+L L+ Sbjct: 241 EKDECERALVFTLTKKGSARLAARLNADGVPAEAIHGDMSQAERQKTLDKFKRGKLKTLV 300 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATDVAARG+DV IS V+N+D+P +E+YVHRIGRT RAG++G A+ F +R +LR I Sbjct: 301 ATDVAARGIDVSDISHVINFDMPNATENYVHRIGRTARAGKSGTAITFCLPEDRGMLRAI 360 Query: 361 ERTMKLTIPEVE-----LPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAE 415 ++ + I E++ + E R + A K + K + Sbjct: 361 QKLIGKKIAEMDGFTFFPSDREPKSARSNAQVAGKRAKGSGPRKGPGNGKFAQKPKGKPT 420 Query: 416 GEELDLETLAAALLKMAQGERTLIVPPDAPMRP 448 G++ + A +P Sbjct: 421 GKKSPPRRSPSKSSDNASAPAGDTGGYLKRKKP 453 >UniRef50_B9SAJ6 Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9SAJ6_RICCO Length = 956 Score = 550 bits (1418), Expect = e-155, Method: Composition-based stats. Identities = 153/456 (33%), Positives = 230/456 (50%), Gaps = 15/456 (3%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 + TF G IL + D G+ P+PIQA+ P L RD++ +A+TGSGKT + Sbjct: 483 VPAPFITFEASGFPPEILNDIRDAGFLAPTPIQAQTWPIALRNRDIVAIAKTGSGKTLGY 542 Query: 61 SLPLLQNL----DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYD 116 +P L + P +LVLAPTRELA Q+ + + F + R V+ LYGG Sbjct: 543 LIPAFILLRQCRNNPQNGPTVLVLAPTRELATQIQDEVIKFGRSSR-VSCTCLYGGAPKG 601 Query: 117 VQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQ 176 QL+ L +G IVV TPGRL D L+ +D ++S LVLDEAD ML MGF + I+ + Sbjct: 602 PQLKELTRGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNE 661 Query: 177 IPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQS--SVTTRPDISQSYWTVWGMRKNE 234 IP QT +++AT P+ +R+I + P +V I S + I+Q V M K Sbjct: 662 IPPRRQTLMYTATWPKEVRKIANDLLVNPVQVNIGSVDELAANKSITQYVEVVPQMEKES 721 Query: 235 ALVRFLEAEDFD-AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKD 293 L + L A++ IIF TK ++A ++ + + +AA++GD +Q R+ L + + Sbjct: 722 RLGQILRAQERGSKVIIFCSTKRLCDQLARSIG-HQFGAAAIHGDKSQGERDWVLNQFRS 780 Query: 294 GRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRE 353 G+ IL+ATDVAARGLD++ I +V+NYD P E YVHRIGRTGRAG G V Sbjct: 781 GKSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATG-----VNVAA 835 Query: 354 RRLLRNIERTMKLTIPEVEL-PNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQP 412 + I + + + E L +LL + +E A ++ + S D++ Sbjct: 836 HMIATTIWMVVDVDVEEEGLMVEEKLLTEVGIEVLAVVLKDRSRSRSYDRFERPRVSRFD 895 Query: 413 TAEGEELDLETLAAALLKMAQGERTLIVPPDAPMRP 448 + E + + M+ G + + Sbjct: 896 EKDVTAPGSEAPESGMSPMSPGAHGNVHSGAEEVPK 931 >UniRef50_Q2RQT0 DEAD/DEAH box helicase n=59 Tax=root RepID=Q2RQT0_RHORT Length = 799 Score = 550 bits (1418), Expect = e-155, Method: Composition-based stats. Identities = 188/632 (29%), Positives = 288/632 (45%), Gaps = 20/632 (3%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 TFADLGL L A+ ++GY P+PIQ + IP++ GRDVLG+AQTG+GKTA+F+LP++ Sbjct: 1 MTFADLGLSPETLRAIEEVGYTTPTPIQVQAIPYVQMGRDVLGIAQTGTGKTASFTLPMI 60 Query: 66 QNL---DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 L + + P+ L+LAPTRELA QV+E T + K+ + +++ L GG+ + Q + L Sbjct: 61 DILASGKAKARMPRSLILAPTRELATQVSENFTLYGKYQK-LSMALLIGGESMNEQQKVL 119 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 +G +++ TPGRL+D +RG++ L + LV+DEAD ML MGFI DVE I+A +P+ Q Sbjct: 120 DRGVDVLIATPGRLIDLFERGSILLRDVKVLVIDEADRMLDMGFIPDVERIVALLPKIRQ 179 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 T FSATM + IRR+ F+ P+EVRI+ + + Q+ V K EAL + L Sbjct: 180 TLFFSATMDKEIRRLADAFLMNPKEVRIEPTQKVAETVEQALIMVKASEKREALRQLLRR 239 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 E A IF K + ++L +G++ AL+GDM Q +R + LE+ K + +++ + Sbjct: 240 ETVTNAFIFCNRKRDVDVLYKSLSGHGFDILALHGDMPQYVRTERLEKFKRAEVQLMVCS 299 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 DVAARG+DV +S V N+D+P E Y+HRIGRTGRAGR GRA + + LR IE Sbjct: 300 DVAARGIDVTEVSHVFNFDVPTHPEDYIHRIGRTGRAGRLGRAYTLATPEDAKYLRAIEN 359 Query: 363 TMKLTIPEVELPNAELLGKRRLE-KFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDL 421 + TIP + + A ++ R + +A+ E Sbjct: 360 LLGKTIPPDPQLELSDVAVEDVALAVAEDDRRPKRGGKGRPERGARRSGRGSADAERPRP 419 Query: 422 ETLAAALLKMAQGERTLIVP--------PDAPMRPKREFRDRDDRGPRDRNDRGPRGDRE 473 A A ER + P+ + R + N+R Sbjct: 420 LAPERAANDQAPVERPAVEKTLAEQPVAERPPVERGQAERTAERPSSDRTNERASSDRSS 479 Query: 474 DRPRRERRDVGDMQLYR------IEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFAS 527 +R ER + R GR + E I IG + Sbjct: 480 ERASSERNGDDRGRGGRGRDDRSAARGRRPR-RWEDDPQSEVMEMRIGDDVIGFGGFTPA 538 Query: 528 HSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGR 587 + + L + + + + G Sbjct: 539 FLLVPSVPFSDPDELDREALAEEALADAGLLVEAEEPENDSDFVPAPGLAAREIETAPKA 598 Query: 588 NFSGERREGGRGDGRRFSGERREGRAPRRDDS 619 + E+ E + + + +R R D Sbjct: 599 PVAAEKPEREKAEREKPKRKRGGRRTKGATDG 630 >UniRef50_Q0G0P8 Superfamily II DNA and RNA helicase n=1 Tax=Fulvimarina pelagi HTCC2506 RepID=Q0G0P8_9RHIZ Length = 457 Score = 550 bits (1418), Expect = e-155, Method: Composition-based stats. Identities = 160/454 (35%), Positives = 251/454 (55%), Gaps = 17/454 (3%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 TTF GL P+ AL L P+PIQ IPH L GRD+LG+AQTG+GKTAAF+LP Sbjct: 2 TSTTFDGFGLAEPLTRALARLELTTPTPIQERAIPHALAGRDMLGIAQTGTGKTAAFALP 61 Query: 64 LLQNLD-----PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQ 118 LL +L P + + L+L+PTRELAVQ+AE++ D S+ ++ ++GG Q Sbjct: 62 LLHHLMTVGGKPTTRTTKALILSPTRELAVQIAESIADLSEGTP-ISHCVVFGGVSVRPQ 120 Query: 119 LRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP 178 ++AL +G I+V TPGRLLD +++ +DL + L+LDEAD ML MGF+ DV I+ + P Sbjct: 121 IQALARGVDILVATPGRLLDLMEQRAIDLRETRHLILDEADRMLDMGFVRDVMKIVGKCP 180 Query: 179 EGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVR 238 + Q+ +FSATMP+ I ++++ + PQ+V + +V T I+QS ++V K L+ Sbjct: 181 DDRQSMMFSATMPKPIEDLSKKILTNPQKVSVTPAVVTVEKIAQSVFSVPQRAKKHWLID 240 Query: 239 FLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDI 298 F+ D ++F RTK+ + L++ G + A++G+ +Q R++ L +DG +D+ Sbjct: 241 FVSKNDTGRIVVFTRTKHGANRLTSDLDKAGIQALAIHGNKSQTARQKALGAFQDGEIDV 300 Query: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLR 358 L+ATD+ ARG+ V+ IS VVN+D+P + ESYVHRIGRT RAGR+G+A+ V+ ER L+ Sbjct: 301 LVATDIVARGIHVDDISHVVNFDLPEEPESYVHRIGRTARAGRSGQAIALVDPSERAKLK 360 Query: 359 NIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEE 418 I + + L + + + +L++ D + + + Sbjct: 361 QIIKLTGI-----------DLTPQATDYTVNVLAGELDADDGKRRGPRNQQPRNGRPRNR 409 Query: 419 LDLETLAAALLKMAQGERTLIVPPDAPMRPKREF 452 + + RP + Sbjct: 410 GKNGNGGRPNGGAKRQNAGGETANRSSQRPSGKP 443 >UniRef50_A5G1U8 DEAD/DEAH box helicase domain protein n=7 Tax=Alphaproteobacteria RepID=A5G1U8_ACICJ Length = 525 Score = 550 bits (1418), Expect = e-155, Method: Composition-based stats. Identities = 156/372 (41%), Positives = 225/372 (60%), Gaps = 6/372 (1%) Query: 2 AEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFS 61 + T F LGL P+L A+++ YE P+PIQA IP +L G D++G+AQTG+GKTAAF Sbjct: 53 SAVLTDFTTLGLAEPLLRAISEQSYETPTPIQARSIPVMLEGHDLVGIAQTGTGKTAAFV 112 Query: 62 LPLLQNLDPELKAP-----QILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYD 116 LP+L + P + LVLAPTRELA Q+A+A + K R +V + GG + Sbjct: 113 LPILHRIAANRARPAPRACRALVLAPTRELATQIADAARTYGKFTRP-SVAVVIGGAKPG 171 Query: 117 VQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQ 176 Q R + G ++V TPGRLLDH+ G + L + +VLDEAD+ML +GFI + IMA+ Sbjct: 172 PQARRMESGVDLLVATPGRLLDHVAAGVIRLDAVETVVLDEADQMLDLGFIPAIRQIMAK 231 Query: 177 IPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEAL 236 +P Q +FSATMP+ IR + F+++P+EV + I Q + K + L Sbjct: 232 LPRQRQAVMFSATMPKPIRALAGEFLRDPREVAVSVESKPVDRIDQQVLLLAPEEKKDKL 291 Query: 237 VRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRL 296 L + AI+F RTK+ +V LE G +AA++G+ +Q RE+ L++ + GR+ Sbjct: 292 AWLLADVAVERAIVFTRTKHGADKVTRHLEDAGIGAAAIHGNKSQGQRERALDQFRSGRI 351 Query: 297 DILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRL 356 +L+ATD+AARG+DV+ +S VVN+++P ESYVHRIGRT RAG G A+ VE E Sbjct: 352 RVLVATDIAARGIDVDNVSHVVNFELPNVPESYVHRIGRTARAGAEGVAISLVEPSELPY 411 Query: 357 LRNIERTMKLTI 368 LR+IE + + Sbjct: 412 LRDIETLIGRHL 423 >UniRef50_B0SYC6 DEAD/DEAH box helicase domain protein n=33 Tax=Alphaproteobacteria RepID=B0SYC6_CAUSK Length = 678 Score = 549 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 184/635 (28%), Positives = 282/635 (44%), Gaps = 23/635 (3%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 T F++LGL L+A+ D GY +PIQA IP L G+DVLG+AQTG+GKTAAF+LPL+ Sbjct: 2 TEFSELGLSPTTLQAVADTGYTTATPIQAAAIPVALAGQDVLGIAQTGTGKTAAFTLPLI 61 Query: 66 QNLD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 L + + P+ LV+APTRELA QVA + ++K + ++ L GG + Q + L Sbjct: 62 DKLMNGRAKARMPRALVIAPTRELADQVASSFEKYAKGTK-LSWALLIGGVSFGDQEKKL 120 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 +G +++ TPGRLLDH +RG L ++ + LV+DEAD ML MGFI D+E I P Q Sbjct: 121 DRGVDVLIATPGRLLDHFERGKLLMTGVQFLVVDEADRMLDMGFIPDIERIFKMTPPKKQ 180 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMR---KNEALVRF 239 T FSATMP I R+T++F+K+P + TT +I+Q V K AL Sbjct: 181 TLFFSATMPPEITRLTKQFLKDPVRIEASRPATTNENITQLMVKVPSSDPKAKRLALRAL 240 Query: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299 +E + I+F K VA++L+ +G+++AA++GD++Q+ R +TL +DG L IL Sbjct: 241 IEKAQIETGIVFCNRKTEVDVVAKSLKSHGFDAAAIHGDLDQSQRTKTLAAFRDGSLKIL 300 Query: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359 +A+DVAARGLD+ +S V NYD+P ++ YVHRIGRTGRAGR+G + V + + Sbjct: 301 VASDVAARGLDIPAVSHVFNYDVPHHADDYVHRIGRTGRAGRSGVTYMLVTPADDKGFDK 360 Query: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEL 419 + + + T E +L + + G +++ K + + Sbjct: 361 VVKLIGSTPTEEKL-DLDYSGAVTIKREGDK--RGGGRDRAPRGGDRERGRDRDRNRAPT 417 Query: 420 DLETLAAALLKMAQGERTL------IVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDRE 473 + +AAA L+ A ++ RP R + R ++ P + Sbjct: 418 EPSDVAAANLEAAITGVPATPVASTVMSDPPAKRPARVRKPRGEKAAEAVVADAPEAEAR 477 Query: 474 DRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAI-------ANEGDISSRYIGNIKLFA 526 R + D + GA A R G+ + Sbjct: 478 VAIARPAAPAAETGRRDRGGSSRDRGRQPRVEGAADEQPAVEAERAPRPERAEGDRPVRE 537 Query: 527 SHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGG 586 + E + + +P R R+ Sbjct: 538 RGRGRGRDRERSAERTEQPRVEAAEQPQPQAEAERAPRPERAEGDRPSRERGRERGRDRD 597 Query: 587 RNFSGERREGGRGDGRRFSGERREGRAPRRDDSTG 621 R + R Sbjct: 598 RRPERGEPRQEQPRVEAERAPAPRAEPERSVRGAP 632 >UniRef50_A6LUG3 DEAD/DEAH box helicase domain protein n=33 Tax=Firmicutes RepID=A6LUG3_CLOB8 Length = 480 Score = 549 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 158/437 (36%), Positives = 249/437 (56%), Gaps = 3/437 (0%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 F + IL+++ LGY+ PS +Q + IP +L +D++ +QTGSGKTAAF +P Sbjct: 1 MNNEFTKFKISDEILKSIEGLGYKNPSKVQEKVIPEILLNKDIIVKSQTGSGKTAAFGIP 60 Query: 64 LLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 L + +D PQILVL PTRELAVQV+E +T+ + R + V+++G + Q R L+ Sbjct: 61 LCEKVDWNENIPQILVLTPTRELAVQVSEDITNIGRFKR-IKSVSIFGKEPISEQERKLK 119 Query: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183 Q +VVGTPGR+LDH+ RG+L+L+++ V+DEADEML MGFI VE I+ ++P+ T Sbjct: 120 QKTHVVVGTPGRILDHIDRGSLNLAQIKYFVIDEADEMLNMGFIGQVEGIIRRLPKKKVT 179 Query: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAE 243 LFSAT+PE I+ + ++M +P ++ I + +I + + K E L L E Sbjct: 180 MLFSATIPEEIKVLCDKYMNKPVDISINNQKLINENIDHNLYYTNYEEKIEKLNDILITE 239 Query: 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 303 + +IF +TK V + L+ GY+ ++G M Q R ++ + G IL++TD Sbjct: 240 KPETVVIFAKTKENVDTVFQWLKSKGYSVNRIHGGMLQKERLSIMDGFRLGDFRILVSTD 299 Query: 304 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 363 +A+RG+DV+ I+ V+NYD+P++ E+YVHRIGRTGRAG G+A+ F N + +LL IE Sbjct: 300 LASRGIDVKGITHVINYDLPVEKEAYVHRIGRTGRAGEKGKAISFCVNEKDKLLSEIEEF 359 Query: 364 MKLTIPEVELPNAELLGKRRLE--KFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDL 421 + IP LP ++ K + E K ++ E + + +++ Sbjct: 360 IGFKIPVYNLPEKIMVEKEKSEGIKTLKSKPKRKEEKSKTINNNITKIYLNGGKKKKIRA 419 Query: 422 ETLAAALLKMAQGERTL 438 + A+ KM + Sbjct: 420 GDIVGAICKMDGIKSED 436 Score = 74.4 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 33/94 (35%) Query: 459 GPRDRNDRGPRGDREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRY 518 + + + + + + + ++ + G+ + IVGAI I S Sbjct: 377 KEKSEGIKTLKSKPKRKEEKSKTINNNITKIYLNGGKKKKIRAGDIVGAICKMDGIKSED 436 Query: 519 IGNIKLFASHSTIELPKGMPGEVLQHFTRTRILN 552 IG I + S S +++ G V+ I Sbjct: 437 IGIIDVQDSVSYVDILNGKGKRVIDELKNITIKG 470 >UniRef50_O00571 ATP-dependent RNA helicase DDX3X n=262 Tax=cellular organisms RepID=DDX3X_HUMAN Length = 662 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 141/389 (36%), Positives = 205/389 (52%), Gaps = 24/389 (6%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +F+D+ + I+ + Y +P+P+Q IP + RD++ AQTGSGKTAAF LP+L Sbjct: 181 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 240 Query: 67 NL------------------DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVA 108 + + P LVLAPTRELAVQ+ E FS + V Sbjct: 241 QIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFS-YRSRVRPCV 299 Query: 109 LYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIE 168 +YGG Q+R L +G ++V TPGRL+D ++RG + L LVLDEAD ML MGF Sbjct: 300 VYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEP 359 Query: 169 DVETIMAQ--IPEG--HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSY 224 + I+ Q +P T +FSAT P+ I+ + R F+ E + + +T +I+Q Sbjct: 360 QIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKV 419 Query: 225 WTVWGMRKNEALVRFLEAEDFDA-AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQAL 283 V K L+ L A D+ ++FV TK + + L GY +++GD +Q Sbjct: 420 VWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRD 479 Query: 284 REQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAG 343 RE+ L + + G+ IL+AT VAARGLD+ + V+N+D+P D E YVHRIGRTGR G G Sbjct: 480 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 539 Query: 344 RALLFVENRERRLLRNIERTMKLTIPEVE 372 A F R + +++ + EV Sbjct: 540 LATSFFNERNINITKDLLDLLVEAKQEVP 568 >UniRef50_Q0K893 ATP-dependent RNA helicase n=129 Tax=Proteobacteria RepID=Q0K893_RALEH Length = 646 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 195/619 (31%), Positives = 270/619 (43%), Gaps = 51/619 (8%) Query: 2 AEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFS 61 E+ FA LGL A IL AL++L Y P+P+QA+ IP L GRD+L +QTGSGKTAAF Sbjct: 54 PAVESGFATLGLDAAILRALSELNYNTPTPVQAQAIPAFLAGRDLLVSSQTGSGKTAAFM 113 Query: 62 LPLLQNLD---------------------PELKAPQILVLAPTRELAVQVAEAMTDFSKH 100 LP +Q + P P +LVL PTRELA+QV EA + ++ Sbjct: 114 LPAIQRISEMPAPQRATEPAKRMKGKRPRPSPAQPALLVLTPTRELALQVTEAAAKYGRN 173 Query: 101 MRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADE 160 +R + ++ GG Y QL AL + P I+V TPGRLLDH+ G +DLS L LV DEAD Sbjct: 174 LRRIVCASILGGMPYPKQLAALAKMPDILVATPGRLLDHIDAGRIDLSALQMLVFDEADR 233 Query: 161 MLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDI 220 ML MGF +D++ I+ P QT +FSAT+ I ++ R +++PQ + I ++ + I Sbjct: 234 MLDMGFADDIDAIVNATPATRQTLMFSATLDARIAQLASRQLRDPQRIEIAAARADQSHI 293 Query: 221 SQSYWTVWG-MRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDM 279 Q K L L AI+F TK +AE L G+++ AL+GDM Sbjct: 294 EQRLHFTDDMSHKERLLDHLLRDATLKQAIVFTATKRDADSLAERLSDTGFSAGALHGDM 353 Query: 280 NQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRA 339 Q R +TL L+ G L +L+ATDVAARG+DV I+ VVN+D+P +E YVHRIGRTGRA Sbjct: 354 TQGARNRTLTALRRGNLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRA 413 Query: 340 GRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSD 399 GR+G A+ V + + + IER I + E + + + D Sbjct: 414 GRSGTAINLVNHNDMFQWKRIERFTNQRIDASVIEGLEP-RRSPKPRSNFGGKPGGGRGD 472 Query: 400 LDQYRALLSKIQPTAEGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRG 459 + + + + + +R G Sbjct: 473 FRGNGGGYRGGERSFGDRKFGGGESRTGFGERKFSGESRGFGNRPEGARPFGDDNRGGFG 532 Query: 460 PRDRNDRGPRGDREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYI 519 R+ RG + R D R E GR G + R G N + R Sbjct: 533 NREGGYRGQGQGGQGAGYRGANDGARGFGNR-EGGRSFGDDNR---GGFGNRDGAAPRSF 588 Query: 520 GNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFG 579 G+ G+ + G G G Sbjct: 589 GD------------------------NNRGGFGDRTGGGYRGNTGGNGDGRSFGNRDGNR 624 Query: 580 GERREGGRNFSGERREGGR 598 R G N SG R R Sbjct: 625 DGNRSFGGNGSGNRNSRSR 643 >UniRef50_B6YWR7 DEAD/DEAH box RNA helicase n=3 Tax=Thermococcus RepID=B6YWR7_THEON Length = 403 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 178/406 (43%), Positives = 252/406 (62%), Gaps = 4/406 (0%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNG-RDVLGMAQTGSGKTAAFSLPL 64 +F +LGL L A+ G+ +P+ IQ E IP LL+G D++G +QTG+GKTAAF+LP+ Sbjct: 1 MSFENLGLSEATLVAVRRKGFSQPTDIQKEVIPRLLSGDADIIGQSQTGTGKTAAFALPI 60 Query: 65 LQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124 ++ +D + K+ Q ++LAPTRELA+QVA+ + + + V V A+YGGQ Q+RAL + Sbjct: 61 IEAIDEKEKSVQAIILAPTRELALQVADEIKSL-RGRKRVYVYAVYGGQPIGPQIRALER 119 Query: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184 G +VVGTPGR+LDH++RGTLDLSK+ +LDEAD ML MGFI+D+E I + P+ + Sbjct: 120 GTHVVVGTPGRVLDHIRRGTLDLSKVKFFILDEADRMLDMGFIDDIEAIFRETPKKKRVL 179 Query: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 +FSATMP I R+ RR+M + + +++ S + Q Y V RK L + L D Sbjct: 180 MFSATMPREILRLARRYMNDYEVIKVSSDELVPGMVEQEYIEVVPARKFSTLKKILS--D 237 Query: 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 I+F TK T E++E L + GY++ ALNGDM+QA RE+T R K R IL+ATDV Sbjct: 238 DFYGIVFCATKRETRELSEKLRKQGYSAEALNGDMSQAARERTFWRFKTKRTRILVATDV 297 Query: 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 AARGLDV+ IS +VNY +PM +E YVHRIGRTGR G+ G+A+ F+ E + LR I Sbjct: 298 AARGLDVQDISHIVNYSLPMTAEDYVHRIGRTGRMGKKGKAVTFIMPGEFKRLRYIASVA 357 Query: 365 KLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKI 410 + I + EL K + Q+ ++ D R + Sbjct: 358 GVDIQKSELSEELPREYHERYKREERPQRYRKNGRRDYSRGYSRRY 403 >UniRef50_Q485D3 ATP-dependent RNA helicase, DEAD box family n=24 Tax=Gammaproteobacteria RepID=Q485D3_COLP3 Length = 455 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 152/434 (35%), Positives = 243/434 (55%), Gaps = 27/434 (6%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 + +GL A +L+A+ GY+ +PIQ E IP + G D+L AQTG+GKTAAFSLP+L Sbjct: 1 MSVDSIGLSADLLKAVKACGYKNLTPIQQEAIPVIRQGVDLLASAQTGTGKTAAFSLPIL 60 Query: 66 QNL----------------------DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRG 103 + +A + L+L PTRELA QVA+ + FS+++ Sbjct: 61 DAIAKANHAAKSSTTSTDENSAEEKSASGQAIRALILTPTRELANQVADNIKQFSQYLP- 119 Query: 104 VNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLR 163 + +YGG + Q + L+QG ++V TPGRLL+HL +DLS++ LVLDEAD ML Sbjct: 120 IKSGVVYGGGKMASQTKMLKQGLDVLVATPGRLLEHLALRNVDLSQVKFLVLDEADRMLD 179 Query: 164 MGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQS 223 MGF+ D+E ++ + HQT +FSAT + ++ + + +K P+ + + TT I Q+ Sbjct: 180 MGFLTDIEKLLLAVKHKHQTLMFSATFSDRVKSLANQLLKSPKTISVSKENTTSGKIKQA 239 Query: 224 YWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQAL 283 + V RK E L + ++ ++F TK + +A+ L+ +G +A +GD Q Sbjct: 240 VYWVTEERKRELLSELIGVNNWQQVLVFAGTKESANTLAKELKLDGIKAALCHGDKTQGA 299 Query: 284 REQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAG 343 R + LE+ +G++ +L+ATDVAARGLD+ ++ VVN+ +P E YVHR+GRTGRAG++G Sbjct: 300 RNKALEQFSEGKVRVLVATDVAARGLDIPDLAFVVNFHLPFLPEDYVHRVGRTGRAGKSG 359 Query: 344 RALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQY 403 A+ V ++ R L NIE+ ++ + P E + + + ++ ++Y Sbjct: 360 TAISLVSPKDERFLENIEQLIERKFERIVAPGYE----FNRLEASEYQEATVKRDSKNRY 415 Query: 404 RALLSKIQPTAEGE 417 RA K Q A+ + Sbjct: 416 RAAQEKNQNLAKKD 429 >UniRef50_Q1D015 ATP-dependent helicase, DEAD/DEAH-box family n=6 Tax=Cystobacterineae RepID=Q1D015_MYXXD Length = 808 Score = 548 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 171/610 (28%), Positives = 285/610 (46%), Gaps = 40/610 (6%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F D+ L PI AL + GY P+P+QA + G+D++ ++TG+GKTAAF LPLL+ Sbjct: 31 FDDMNLSEPIRLALAERGYTNPTPVQARAFRPAIEGKDLIVRSKTGTGKTAAFGLPLLEK 90 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 + + + + L+L PTRELA+QVA+ + +KH +G+ + A+YGG Q AL +G Sbjct: 91 IPADERRVRALILCPTRELALQVADELKMLAKH-KGLKIAAIYGGASMKQQEDALEEGTP 149 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 I+VGTPGR+ DH+ RG L L VLDEADEML GF E+V I+ ++P+ Q LFS Sbjct: 150 IIVGTPGRVFDHINRGNLKLDACDHAVLDEADEMLNQGFYEEVTRILDRLPKTRQVLLFS 209 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTV-WGMRKNEALVRFLEAEDFD 246 AT+P I+ + R+ + + + V T I + V K L+ LE E+ Sbjct: 210 ATVPTDIQNLIARYTTNAETLLLSGDVFTVEHIHHIRYDVSDAFPKPRNLIYVLEKEEPQ 269 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 AIIF T++ T V L RNG+++ LNGD+ Q RE+ + ++K G + ++ATD+AA Sbjct: 270 NAIIFCNTRDDTALVTAVLNRNGFDAELLNGDLPQKERERVMGKVKRGEVAFMVATDIAA 329 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RG+D+ + V+NY +P D Y+HR+GRTGR G G A+ RE ++E+ + Sbjct: 330 RGIDISGLEYVINYSLPEDPAVYLHRVGRTGRIGNKGTAINLFSGRELATYTSLEKKYGI 389 Query: 367 TIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAA 426 + E+P E + E+ ++Q+ S + + L ++++P A+ ++L L Sbjct: 390 KFDKREMPAPEEAMRLWTERHVREIQEAAGGSVFEGFLPLAAQLKPRADADDLIAFLLKY 449 Query: 427 ALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGD--------------- 471 + + + + P+ + + G R+R +R RG+ Sbjct: 450 FFSHLRMEKAAAAMAAEGREPPQERKFESREGGRRERGERKERGERRDRERDDRREKRGE 509 Query: 472 ---------------------REDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIAN 510 R + +G DG+ I A+ + Sbjct: 510 SSERERERRPRRDDARRERGAESGRGAAALEAGPGEAKLWVNLGTADGLGPGSIATALED 569 Query: 511 EGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGE 570 G + + +L + + + + + + + K + ++ Sbjct: 570 AGAPVGKVV-RAELRPTFAYVFVAEEDA-AAFETINGKQHGAKTLRVEKSKPRTERDATP 627 Query: 571 RRGGGRGFGG 580 R G Sbjct: 628 RPPPSPDAGP 637 >UniRef50_UPI00016C0D94 ATP-dependent RNA helicase n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0D94 Length = 472 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 160/491 (32%), Positives = 255/491 (51%), Gaps = 24/491 (4%) Query: 80 LAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDH 139 L PTRELAVQ+A M H + + ++A+YGG+ + QL LR+ PQIVVGTPGR++DH Sbjct: 2 LCPTRELAVQIATEMKKICAHKKDIGILAVYGGESIEKQLAGLRRRPQIVVGTPGRVMDH 61 Query: 140 LKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITR 199 ++R TL L L LVLDEADEML MGF ED++TI+ IPE Q LFSAT+P+AI I Sbjct: 62 MRRKTLKLGALKMLVLDEADEMLNMGFREDIDTILESIPENRQFLLFSATLPKAIMEIAN 121 Query: 200 RFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATL 259 ++ ++ T ISQ Y V +K+E L R +++ +F ++F TK Sbjct: 122 KYQTNAVKINTTKKQVTVKTISQHYLDVNEKKKSEVLARLIDSNNFKLMLVFCNTKKRVD 181 Query: 260 EVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVN 319 ++ + L GY + AL+GDM Q R+ + + + G +DILIATDVAARG+D++ + V N Sbjct: 182 DLCKDLMSRGYKAEALHGDMKQIHRDSVMNKFRRGIVDILIATDVAARGIDIDDVDAVFN 241 Query: 320 YDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELL 379 YD+P+D E YVHRIGRTGRA R G + FV +E LR IER I ++ +P + + Sbjct: 242 YDLPIDDEYYVHRIGRTGRANRKGTSYSFVCGKEIYKLRQIERYTNSKITKITIPTMDDI 301 Query: 380 GKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGE----ELDLETLAAALLKMAQGE 435 ++ +++++++ + A +++I E ++ +AAA L +A + Sbjct: 302 KGNKVNSILDEIKEEIKEGKITTNLAFITQIAQELNAECEELDITSTEVAAAFLNVAMKK 361 Query: 436 RTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDMQLYRIEVGR 495 G R + + + + I +G Sbjct: 362 MVT--------------------GSNPRVKLADLEHEDKKTTTYGYNEKGYKRLFINLGN 401 Query: 496 DDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPM 555 D +E +V +A+ +S + IG I + S +E+P E++ + + + + Sbjct: 402 KDKLESSQLVKFVASNTSVSGKEIGKIDMLDKFSFLEVPAKYVDELIAVLPKKKFKGRKV 461 Query: 556 NMQLLGDAQPH 566 N+++ + Sbjct: 462 NIEVANKKKKK 472 >UniRef50_Q17KA8 DEAD box ATP-dependent RNA helicase n=4 Tax=Eukaryota RepID=Q17KA8_AEDAE Length = 718 Score = 548 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 137/488 (28%), Positives = 219/488 (44%), Gaps = 10/488 (2%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 + F + G + L+ + G+++P+ IQA ++GRD++G+A+TGSGKT A+ Sbjct: 96 VPAPIMQFGESGFPSVFLDEMGRQGFQEPTSIQAVGWSIAMSGRDMVGIAKTGSGKTLAY 155 Query: 61 SLPLLQNLDPELK-----APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRY 115 LP L ++ + + P LVLAPTRELA Q+ + DF + M + ++GG Sbjct: 156 ILPALIHISNQPRLLRGDGPIALVLAPTRELAQQIQQVCNDFGRRMS-IMNTCIFGGASK 214 Query: 116 DVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMA 175 Q LR+G +IV+ TPGRL+D L+ GT +L + + LVLDEAD ML MGF + I++ Sbjct: 215 HPQADDLRRGVEIVIATPGRLIDFLESGTTNLRRTTYLVLDEADRMLDMGFEPQIRKIIS 274 Query: 176 QIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSV-TTRPDISQSYWTVWGMRKNE 234 QI Q ++SAT P+ IR++ F++E ++ I S +I Q K Sbjct: 275 QIRPDRQVLMWSATWPKEIRKLAEEFLREYIQINIGSLNLAANENIMQIIECCEEYEKET 334 Query: 235 ALVRFLEA---EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERL 291 L + L + +IIFV TK ++ ++RNG+ ++GD Q R+ L Sbjct: 335 RLFKLLTELSQQGDSKSIIFVETKRKVDQITNVIKRNGWRCDGIHGDKTQKDRDYVLNTF 394 Query: 292 KDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVEN 351 + R IL+ATDVA+RGLDV+ + V+N+D P ++E Y+HRIGRTGR+ G + F Sbjct: 395 RRLRSGILVATDVASRGLDVDDVKYVINFDFPNNTEDYIHRIGRTGRSTNKGTSYTFFTP 454 Query: 352 RERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQ 411 ++ ++ V + + + + + Sbjct: 455 ANGAKAGDLIGVLREANQFVNPELEQYARSGGRNRSGGRGRYGGGGGGRQMRNDGKGRRG 514 Query: 412 PTAEGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGD 471 D A R+ G D G + + Sbjct: 515 DDYRSGNGDDRGPKFARRDDYGSGNRNDYGSRNGFGGDRDGPRGGGFGGNKDRDGGFKSN 574 Query: 472 REDRPRRE 479 Sbjct: 575 GYSGSNDR 582 >UniRef50_Q0B215 DEAD/DEAH box helicase domain protein n=8 Tax=Proteobacteria RepID=Q0B215_BURCM Length = 511 Score = 547 bits (1411), Expect = e-154, Method: Composition-based stats. Identities = 157/481 (32%), Positives = 243/481 (50%), Gaps = 6/481 (1%) Query: 3 EFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSL 62 +FA LGL P+L L DL Y+ P+P+Q + IP +L G+DV+ AQTG+GKTA F+L Sbjct: 32 NTSMSFASLGLIDPLLRNLQDLNYQTPTPVQVKAIPAVLGGKDVMAGAQTGTGKTAGFAL 91 Query: 63 PLLQNLDPELKAP-----QILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDV 117 PLLQ L + A ++LVL PTRELA QV ++ + K + + +A YGG + Sbjct: 92 PLLQRLVQQGPAVSSNRARVLVLVPTRELAEQVLQSFVAYGKGL-DLRFLAAYGGVSINP 150 Query: 118 QLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQI 177 Q+ LR+G ++V TPGRLLD ++ + ++ LVLDEAD ML +GF ++ + A + Sbjct: 151 QMMKLRKGVDVLVATPGRLLDLNRQNAVQFDQVETLVLDEADRMLDLGFARELNAVFAAL 210 Query: 178 PEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALV 237 P QT LFSAT + IR + ++ P + + T I Q TV K + + Sbjct: 211 PVQRQTLLFSATFTDDIRTMAASILRSPVNISVSPPNVTGSKIKQWVVTVDKRNKPDLFM 270 Query: 238 RFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLD 297 + ++D A++FV+T+N +A L+ GY ++GD Q R + LER K G + Sbjct: 271 HLVAENNWDHALVFVKTRNGVEYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVQ 330 Query: 298 ILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLL 357 +L+ATDVAARGLD++ + LV+N D+P+ ++ YVHRIGRTGRAG +G A+ V E L Sbjct: 331 MLVATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQL 390 Query: 358 RNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGE 417 IE + T+ E P E + ++ ++ + + + P A + Sbjct: 391 AAIEALIGQTLRREEEPGFEAEHRVPETSSTGQIIKKPKKPKKPKVPQGGAAATPVAGKK 450 Query: 418 ELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPR 477 A G+ ++ K + + + R + Sbjct: 451 PQPQGGDGKRKGGGAAGKGASVLNGSPFSVQKPRGKGKPAGKAVAGARKPAGKPAGGRGK 510 Query: 478 R 478 Sbjct: 511 H 511 >UniRef50_A8WWC4 C. briggsae CBR-VBH-1 protein n=2 Tax=Caenorhabditis briggsae RepID=A8WWC4_CAEBR Length = 692 Score = 547 bits (1411), Expect = e-154, Method: Composition-based stats. Identities = 151/408 (37%), Positives = 217/408 (53%), Gaps = 37/408 (9%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 + F+D G ++E + GY KP+P+Q IP LL RD++ AQTGSGKTAAF Sbjct: 158 VPAAIENFSDAGFGPAVMENVTRSGYTKPTPVQKHSIPTLLFNRDLMSCAQTGSGKTAAF 217 Query: 61 SLPLLQNLDPELK------------------------------APQILVLAPTRELAVQV 90 LP++Q++ P LVL+PTRELA+Q+ Sbjct: 218 LLPIIQHIMAGGPDMIKTVSSATNIFGFKVILQPTFNNGRRTYYPSALVLSPTRELAIQI 277 Query: 91 AEAMTDFSKHMRGVNVVALYGG-QRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSK 149 + FS + + LYGG + Y Q+ LR G I++ TPGRL+D +++G + LS Sbjct: 278 HKEAAKFS-YKTNLQTAILYGGRENYRDQVNRLRSGVHILIATPGRLIDIIEQGFIGLSG 336 Query: 150 LSGLVLDEADEMLRMGFIEDVETIMAQ-IPEG--HQTALFSATMPEAIRRITRRFMK-EP 205 LVLDEAD ML MGF + I+ Q +P TA+FSAT P+ I+ + + F+K Sbjct: 337 CRYLVLDEADRMLDMGFEPQIRKIVGQGMPPKTARTTAMFSATFPKEIQLLAKDFLKENY 396 Query: 206 QEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED-FDAAIIFVRTKNATLEVAEA 264 + + +T +I Q V M K + L+ L ED + ++FV TK E+A Sbjct: 397 VFLAVGRVGSTSENIEQRLLWVNEMEKRQNLMDILMNEDATNLVLVFVETKRGANELAYF 456 Query: 265 LERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPM 324 L R S +++GD+ Q RE+ LE + G+ IL+AT VAARGLD+ + VVNYD+P Sbjct: 457 LNRQQIRSVSIHGDLKQIERERNLEMFRSGQFPILVATAVAARGLDIPNVRHVVNYDLPG 516 Query: 325 DSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVE 372 DS+ YVHRIGRTGR G G A F ++ R + R+++ + EV Sbjct: 517 DSDEYVHRIGRTGRCGNLGIATSFFNDKNRGIGRDLKTLIMEANQEVP 564 >UniRef50_A3WBD4 DNA and RNA helicase n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WBD4_9SPHN Length = 497 Score = 547 bits (1410), Expect = e-154, Method: Composition-based stats. Identities = 166/468 (35%), Positives = 247/468 (52%), Gaps = 16/468 (3%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 TFADLGL +L+A+ D GY +P+ IQAE IP +L +D++G+AQTG+GKTA+F LP++ Sbjct: 36 MTFADLGLSPELLKAVEDAGYTEPTAIQAEAIPAVLMMKDLIGIAQTGTGKTASFVLPMI 95 Query: 66 QNLDPELKA---PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 + + P+ L+L PTRELA QVAE + + + + L GG + QL+ L Sbjct: 96 DVMAAGRRRALMPRSLILEPTRELAAQVAENFEKYGAN-HDLKMALLIGGVQMGDQLKTL 154 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 +G +++ TPGRL+D +RG + L+ LV+DEAD ML MGFI D+E I ++PE Q Sbjct: 155 DEGVDVLIATPGRLMDLFERGKILLNGCELLVIDEADRMLDMGFIPDIEFICDKLPETRQ 214 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 T LFSATMP I ++ ++F+ P+ + + TT DI+ V +K + L L Sbjct: 215 TMLFSATMPAPIEKLAKKFLSNPKRIETTRAATTNKDITAFKVPVKARQKRDTLEWLLAN 274 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 + + AIIF K E+ + L+R G+ S ++GDM+Q+ R + L+R K G ++IL+A+ Sbjct: 275 DQVETAIIFANRKTTVRELNKHLQRQGFASGEIHGDMDQSSRLKELDRFKSGDVNILVAS 334 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 DVAARGLD++ +S V N+D P + YVHRIGRTGRAG GRA V + + + N+E+ Sbjct: 335 DVAARGLDIKGVSHVFNFDTPWHPDDYVHRIGRTGRAGAKGRAFTLVADEDAEAIANVEK 394 Query: 363 TMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLE 422 I E + + A E+ D + E Sbjct: 395 LTGAKIKVF---GKEDVRVELADGSAKNTGSDDEAKDEKPAEKKSRSRSRKRDDEGDAPR 451 Query: 423 TLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRG 470 + P RP+R + DD P + G Sbjct: 452 KPRRE---------SAEDKPARKSRPRRRDDESDDPVPAGEWNGPKPG 490 >UniRef50_Q86XP3 ATP-dependent RNA helicase DDX42 n=64 Tax=Eukaryota RepID=DDX42_HUMAN Length = 938 Score = 547 bits (1410), Expect = e-154, Method: Composition-based stats. Identities = 162/643 (25%), Positives = 258/643 (40%), Gaps = 30/643 (4%) Query: 2 AEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFS 61 ++FA G ++ + Y +P+PIQ + +P L+GRD++G+A+TGSGKTAAF Sbjct: 249 PRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFI 308 Query: 62 LPLLQNLDPEL-----KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYD 116 P+L ++ + P +++ PTREL Q+ F K + VA+YGG Sbjct: 309 WPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAY-NLRSVAVYGGGSMW 367 Query: 117 VQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQ 176 Q +AL++G +IVV TPGRL+DH+K+ +L ++S LV DEAD M MGF V +I + Sbjct: 368 EQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASH 427 Query: 177 IPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM-RKNEA 235 + QT LFSAT + I ++ R + +P V D++Q + K Sbjct: 428 VRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNW 487 Query: 236 LV-RFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDG 294 L R +E + ++FV K E+A L++ G+N L+GDM+Q+ R + + K Sbjct: 488 LTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKK 547 Query: 295 RLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRER 354 + +L+ATDVAARGLD+ I V+NYD+ D +++ HRIGRTGRAG G A + ++ Sbjct: 548 DIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDS 607 Query: 355 RLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTA 414 ++ R ++ V +L + + ++ + L + +P Sbjct: 608 NFAGDLVRNLEGANQHVSKELLDLAMQNAWFR-KSRFKGGKGKKLNIGGGGLGYRERPGL 666 Query: 415 EGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDRED 474 E +D A T + F+ + + + Sbjct: 667 GSENMDRGNNNVMSNYEAYKPSTGAMGDRLTAMKAA-FQSQYKSHFVAASLSNQKAGSSA 725 Query: 475 RPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISS-RYIGNIKLFASHSTIEL 533 G + + V + A I GNI + Sbjct: 726 AGASGWTSAGSLNSVPTNSAQQGHNSPDSPVTSAAK--GIPGFGNTGNISGAP----VTY 779 Query: 534 PKGMPGEVLQHFTRTRIL-------NKPMNMQLLGDAQPHTGGER------RGGGRGFGG 580 P V + K + H+ GE G Sbjct: 780 PSAGAQGVNNTASGNNSREGTGGSNGKRERYTENRGSSRHSHGETGNRHSDSPRHGDGGR 839 Query: 581 ERREGGRNFSGERREGGRGDGRRFSGERREGRAPRRDDSTGRR 623 S R G G G R + GR Sbjct: 840 HGDGYRHPESSSRHTDGHRHGENRHGGSAGRHGENRGANDGRN 882 >UniRef50_C6C1F3 DEAD/DEAH box helicase domain protein n=2 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6C1F3_DESAD Length = 493 Score = 547 bits (1409), Expect = e-154, Method: Composition-based stats. Identities = 166/479 (34%), Positives = 259/479 (54%), Gaps = 8/479 (1%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 +F I+ ++ GYE P+PIQ + IP +L GRDV+G+AQTG+GKTAAF+LP++ Sbjct: 1 MSFKQFSFDRRIMAGIHACGYETPTPIQTKAIPEVLKGRDVMGLAQTGTGKTAAFALPIM 60 Query: 66 QNLDPEL----KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 Q L + ++LVLAPTRELA+Q+ E + G+ A++GG Q++A Sbjct: 61 QRLLEKKFSGQGPIRVLVLAPTRELALQIHENFMELGV-EAGIRSAAVFGGVGAMPQIQA 119 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 R+ ++V PGRLLD + +G + L K+ LVLDEAD ML MGF+ D+ IM+++P+ Sbjct: 120 ARRSS-VIVACPGRLLDLMNQGVIKLDKVDTLVLDEADRMLDMGFLPDIRKIMSKLPQRR 178 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 Q LFSATMP+ IR + + + P V++ + + ++ V KN L + LE Sbjct: 179 QNLLFSATMPDDIRDLADKILYRPATVQVAN-TAPAKTVEHVFYPVSQHLKNNLLFKVLE 237 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 D+D+ ++F RTK+ +A L G+ + L G+M+Q R++ L+ +DG +++A Sbjct: 238 QTDYDSLLVFTRTKHKAKNLARRLAARGHKATFLQGNMSQNQRQRALDGFRDGSFKVMVA 297 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 TD+AARG+D +RI+ VVN D+P +E+Y HRIGRTGRAGR+G A FV + RL+R IE Sbjct: 298 TDIAARGIDCDRITHVVNLDVPDTAETYTHRIGRTGRAGRSGSAFSFVTRDDLRLMREIE 357 Query: 362 RTMKLTIPEVELPNAE-LLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELD 420 + + +I L + + ++ + + + AE + D Sbjct: 358 KAVGYSIEHRTLEDFDYDKPNTHPAPAKRGGGRKPAADRKPAGERRPGRGRKPAEARDGD 417 Query: 421 LETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRE 479 A K + + K RD R R GP+G++ED +R+ Sbjct: 418 ESRKPAGERKSGGRRKPGGGRKPSGGPAKSSDERRDSRPSSKRKSGGPKGNQEDSAKRK 476 >UniRef50_D1B384 DEAD/DEAH box helicase domain protein n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B384_SULD5 Length = 436 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 149/412 (36%), Positives = 243/412 (58%), Gaps = 7/412 (1%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F LGL PI +A+ +LGY KP+P+Q + IP +L G+DV+ AQTG+GKTAA++LPLL Sbjct: 3 FEKLGLSEPIRDAVRELGYTKPTPVQNKVIPLVLEGKDVMATAQTGTGKTAAYALPLLHI 62 Query: 68 LDPELKA------PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 L+ + + + L+L PTRELA QV ++ + K++ ++ A+YGG ++ Q + Sbjct: 63 LNKKTQKSTTSKVVRALILVPTRELASQVGASVQAYGKNVP-LSSAAIYGGVKFTPQAKK 121 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 L +G I++ TPGRLL+H+K G +DLS++ +V DEAD +L MGF ++V+T++ P+ Sbjct: 122 LDKGIDILIATPGRLLEHVKLGNVDLSRVEIVVFDEADRILDMGFWDEVQTLLGLFPKKR 181 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 QT LFS + ++++R++ +K+P V I + + Q+ + V RK E L + Sbjct: 182 QTLLFSVGLSKSVKRLSEVSLKKPVTVAINNQGDFAKKVEQTLYLVDKERKCELLSFMIG 241 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 ++ ++F +TK + EV E L +G + L+GD + R Q + K+ + +L+A Sbjct: 242 THNWHQVLVFTKTKQSADEVGEYLNASGLKTLVLHGDKAHSKRTQAIHAFKENAIRVLVA 301 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 TD+A+RGLD+E + V+NY++P D+E Y HR GRTGRAG+ GRA+ V E+ + IE Sbjct: 302 TDIASRGLDIEDLPYVINYELPGDAEDYTHRAGRTGRAGKEGRAISLVAQEEKNKFKEIE 361 Query: 362 RTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPT 413 + +K TI P E E +Q +++ ++ L K + Sbjct: 362 KILKYTIKTEFYPGFETKEWVEKEAKKHTIQAKIDREKANKRPNGLRKKREE 413 >UniRef50_C5KR89 RNA helicase, putative n=3 Tax=Perkinsus marinus ATCC 50983 RepID=C5KR89_9ALVE Length = 584 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 142/401 (35%), Positives = 218/401 (54%), Gaps = 16/401 (3%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 + + TF +++ GY +P+ IQ P L+GRD++G+AQTGSGKT AF Sbjct: 169 IPKPIRTFEQGQFPEVLMKEFEKAGYTEPTNIQKIGWPVALSGRDMVGVAQTGSGKTVAF 228 Query: 61 SLPLLQNLDPEL-----KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRY 115 LP + +++ + P +LVL PTRELA+QV T F K M G+ A++GG Sbjct: 229 MLPAIIHVNAQAPLKHGDGPVVLVLVPTRELAMQVQAEATRFGK-MAGLMNTAIFGGVPR 287 Query: 116 DVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMA 175 Q LR+G +I + TPGRLLD L+ G +L +++ LVLDEAD ML MGF + I++ Sbjct: 288 YNQANDLRRGVEICIATPGRLLDFLETGVTNLKRVTYLVLDEADRMLDMGFEPQIRRIVS 347 Query: 176 QIPEGHQTALFSATMPEAIRRITRRFMKE-PQEVRIQS-SVTTRPDISQSYWTVWGMRKN 233 QI QT ++SAT P+ ++ + R F +E P + + + + PD+ Q V M K Sbjct: 348 QIRPDRQTTMWSATWPKEVQSMARDFCREEPIRLTVGNTQLQANPDVKQRVEVVSEMDKR 407 Query: 234 EALVRFLEAEDFD--AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERL 291 + +L+ I+F TK + + N +N+A+++GD Q R++ L Sbjct: 408 QMFFDWLKETYPKGSRIIVFTETKKGADALTREMRYNNFNAASIHGDKEQRERDRILNDF 467 Query: 292 KDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFV-- 349 K GR ++L+ATDVA RGLD++ + VVNYD+P E YVHRIGRTGRAG G +L F+ Sbjct: 468 KTGRCNVLVATDVAQRGLDIKNVEWVVNYDMPKTVEDYVHRIGRTGRAGAVGNSLTFITN 527 Query: 350 ---ENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKF 387 R+ ++I + M+ + + + + + Sbjct: 528 DTHTPDRVRMAKDIVKCME-DVKQTPPQSLYDMAAISIASV 567 >UniRef50_UPI0000E87E35 putative ATP-dependent RNA helicase protein n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87E35 Length = 427 Score = 545 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 148/414 (35%), Positives = 236/414 (57%), Gaps = 7/414 (1%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 +F L A IL+A+ + GY++P+PIQ + IP ++ + VL AQTG+GKTAAF LP+L Sbjct: 1 MSFQTFNLDASILKAIQEAGYDQPTPIQTKSIPEIMLNKHVLASAQTGTGKTAAFVLPIL 60 Query: 66 QNLDPEL---KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 L + P++L+++PTRELA Q+ +++ +S+++R +N + + GG Y +Q R Sbjct: 61 DKLTKNRSEGRGPRVLIVSPTRELATQITDSIKKYSRYLR-INSITITGGISYGLQNRMF 119 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 + I+V TPGRLLD ++ ++ L ++LDEAD ML MGF+ D+ I + Q Sbjct: 120 SKPIDILVATPGRLLDLYQQKKINFKGLEVMILDEADRMLDMGFVPDIRKIYNATSKKQQ 179 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVW-GMRKNEALVRFLE 241 +FSAT I++I + F+ P + I+ V+ +I Q + K + L F++ Sbjct: 180 MLMFSATFDPPIQKIAQEFLTNPVTISIKPDVSGHKNIKQLIYFADNQSHKQQMLDHFIK 239 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 ++ AIIF TK ++++ L + ++AL+GDM+Q R +T+ R K IL+A Sbjct: 240 NDEVTQAIIFTATKRMADQLSDQLYHSDIKTSALHGDMSQGSRTKTINRFKRNETKILVA 299 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 TD+A+RG+DV+ IS V NYD+P +E Y+HRIGRTGRA G A+ V +R LR IE Sbjct: 300 TDLASRGIDVKNISHVFNYDMPRFAEDYIHRIGRTGRANNKGIAISLVSPTDREFLRKIE 359 Query: 362 RTMKLTIPEVELPNAEL--LGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPT 413 R L I +P E L + + K +K + ++ + + A K + Sbjct: 360 RFTNLKIEIASIPGMEATILKEAKAPKRKSKGRSFVKKGKVFKNEANAKKRIRS 413 >UniRef50_B4MZE1 GK18312 n=1 Tax=Drosophila willistoni RepID=B4MZE1_DROWI Length = 1424 Score = 545 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 137/379 (36%), Positives = 212/379 (55%), Gaps = 10/379 (2%) Query: 2 AEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFS 61 + TF + L+ +++ + Y P+PIQ IP + GRD++ AQTGSGKTAAF Sbjct: 1009 PKPVKTFEEAKLRDILMDNIKKSAYTVPTPIQKVSIPVISAGRDLMACAQTGSGKTAAFL 1068 Query: 62 LPLLQNLDPEL-----KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYD 116 LP+L ++ + PQ ++++PTRELAVQ+ F+ H + + +YGG Sbjct: 1069 LPILNHILDKGYELEIGKPQAIIMSPTRELAVQIFNEARKFA-HNSYLKITIVYGGTSVK 1127 Query: 117 VQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQ 176 Q ++ +G I++ TPGRLLD ++R + +VLDEAD ML MGF E + I+ Sbjct: 1128 YQNESITKGCHILIATPGRLLDFVERTFITFEDTRFVVLDEADRMLDMGFSESMRKIITH 1187 Query: 177 --IPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNE 234 + + HQT +FSAT PE I+R+ F+++ V I D++Q+ + V K Sbjct: 1188 PTMRKEHQTLMFSATFPEEIQRMAGEFLRDYVFVTIGVIGGACSDVTQTIYEVDKFNKRA 1247 Query: 235 ALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDG 294 L+ L D I+FV TK +A + + +++GD Q+ REQ L K G Sbjct: 1248 KLMEILRD-GADGTIVFVETKRGADFLASFFSETEFPTTSIHGDRLQSQREQALREFKSG 1306 Query: 295 RLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFV-ENRE 353 ++ +LIAT VA+RGLD++ +S V+NYD+P + YVHRIGRTGR G GRA F +++ Sbjct: 1307 KMKVLIATSVASRGLDIKNVSHVINYDMPSTIDDYVHRIGRTGRVGNNGRATSFFDSDKD 1366 Query: 354 RRLLRNIERTMKLTIPEVE 372 R L ++ + ++ + EV Sbjct: 1367 RALAGDLVKILEGSGQEVP 1385 >UniRef50_Q2PZC2 Vasa protein n=16 Tax=Neoptera RepID=Q2PZC2_APIME Length = 630 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 147/443 (33%), Positives = 232/443 (52%), Gaps = 21/443 (4%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 + + +F GL+ +L+ + GY+KP+P+Q +P ++NGRD++ AQTGSGKTAAF Sbjct: 191 VPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQTGSGKTAAF 250 Query: 61 SLPLLQNLDPEL---------KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYG 111 ++P++ L PQ+++++PTREL +Q+ + + FS + + V YG Sbjct: 251 AVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLN-SILKTVVAYG 309 Query: 112 GQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVE 171 G Q L G I+V TPGRLLD +++G + S + LVLDEAD ML MGF+ +E Sbjct: 310 GTSVMHQRGKLSAGCHILVATPGRLLDFVEKGRVKFSSVQFLVLDEADRMLDMGFLPSIE 369 Query: 172 TIMAQ---IP-EGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTV 227 ++ +P QT +FSAT P+ ++ + RRF+ + + D+ Q+++ V Sbjct: 370 KMVDHETMVPLGERQTLMFSATFPDEVQHLARRFLNNYLFLAVGIVGGACSDVEQNFYEV 429 Query: 228 WGMRKNEALVRFLEAEDF----DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQAL 283 +K + L LE E+ ++FV K +A L N Y + +++GD Q Sbjct: 430 ARNKKKDLLKEILERENDSGTLGGTLVFVEMKKKADFIAVFLSENNYPTTSIHGDRLQRQ 489 Query: 284 REQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAG 343 RE+ L K GR+ IL+AT VAARGLD++ +S V+NYD+P + YVHRIGRTGR G G Sbjct: 490 REEALADFKSGRMSILVATAVAARGLDIKNVSHVINYDLPKGIDEYVHRIGRTGRVGNRG 549 Query: 344 RALLFVENRERRLLR-NIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQ 402 RA F + E LR ++ R +K +P+ + G + + D+ + Sbjct: 550 RATSFFDPEEDAPLRGDLVRILKQANQ--SVPDWMMGGNANRNFMPGRGISKFGGEDVRE 607 Query: 403 YRALLSKIQPTAEGEELDLETLA 425 A + A + E Sbjct: 608 SEAFAEEYTEEAYSVAQEPEEEW 630 >UniRef50_Q1AG34 Ded1-like DEAD-box RNA helicase n=3 Tax=Coelomata RepID=Q1AG34_CHITE Length = 776 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 144/399 (36%), Positives = 207/399 (51%), Gaps = 28/399 (7%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 + E T+F D+ L I + Y+KP+P+Q IP +L+GRD++ AQTGSGKTAAF Sbjct: 262 VPEHITSFDDIKLTEIIRTNIKMARYDKPTPVQKYAIPIILSGRDLMSCAQTGSGKTAAF 321 Query: 61 SLPLLQNLDPE---------------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVN 105 +P+L + + + P LVLAPTRELA Q+ E FS + + Sbjct: 322 LVPILNRMLEQGASMNPASNRPYQRRKQYPLGLVLAPTRELATQIYEEAKKFS-YRSRMR 380 Query: 106 VVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMG 165 LYGG Q+R L +G ++V TPGRL D + RG + L L LVLDEAD ML MG Sbjct: 381 PAVLYGGNNTSEQMRELDRGCHLIVATPGRLDDIINRGKIGLENLRFLVLDEADRMLDMG 440 Query: 166 FIEDVETIMAQ--IPE--GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDIS 221 F + I+ +P QT +FSAT P+ I+ + F+ + + +T +I+ Sbjct: 441 FEPQIRHIIENRDMPPTGQRQTLMFSATFPKNIQELASDFLSNYIFLAVGRVGSTSENIT 500 Query: 222 QSYWTVWGMRKNEALVRFLEAEDFDA--------AIIFVRTKNATLEVAEALERNGYNSA 273 Q+ V K L+ L + +IFV TK + E L +N + Sbjct: 501 QTILWVNENEKRSYLLDLLSRLREGSPDYSPDSLTLIFVETKKGADALEEFLYQNKHPVT 560 Query: 274 ALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRI 333 +++GD +Q RE L+ + G IL+AT VAARGLD+ + V+NYD+P D E YVHRI Sbjct: 561 SIHGDRSQREREDALKCFRSGDCPILVATAVAARGLDIPHVKHVINYDLPSDVEEYVHRI 620 Query: 334 GRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVE 372 GRTGR G G A F + R ++ ++ + T E+ Sbjct: 621 GRTGRMGNLGIATSFFNEKNRNIVSDLVELLIETNQELP 659 >UniRef50_Q3SF48 DEAD/DEAH box helicase n=7 Tax=cellular organisms RepID=Q3SF48_THIDA Length = 533 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 184/485 (37%), Positives = 255/485 (52%), Gaps = 23/485 (4%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 +F++LGL IL+++ GYE +P+Q + IP L+G D+L + TGSGKTAAF LP + Sbjct: 1 MSFSELGLDPLILKSVLAAGYENATPVQQQAIPAALSGGDLLVSSHTGSGKTAAFLLPSI 60 Query: 66 QNLDPELK----APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 Q L E P++LVL PTRELA+QV +A + K MR L GG Y +QL+ Sbjct: 61 QRLLAEPAVKSIGPRVLVLTPTRELALQVEKAAMTYGKEMRRFRTACLVGGAPYGLQLKR 120 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 L Q +VV TPGRL+DHL+RG +D S+L LVLDEAD ML MGF++D++ I A+ P Sbjct: 121 LSQPVDVVVATPGRLIDHLERGKIDFSRLEVLVLDEADRMLDMGFVDDIKAIAARCPAER 180 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWG-MRKNEALVRFL 240 QT LFSAT+ + + R ++ Q + I++ I Q KN L L Sbjct: 181 QTLLFSATLDGVVGNLARELTRDAQRIEIEAVPHKEAKIEQRLLFADNMDHKNRLLDALL 240 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 + AI+F TK +T E+++ L +G+ S AL+GDM Q R + L+RL++GR +L+ Sbjct: 241 RDVEMVQAIVFASTKRSTEEISDLLAESGFASDALHGDMQQGQRNRALQRLREGRTRVLV 300 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATDVAARG+DV IS V+N+D+P +E YVHRIGRTGRAGR G A+ F RE L++NI Sbjct: 301 ATDVAARGIDVASISHVINFDLPRQAEDYVHRIGRTGRAGRTGIAVSFAGMREGGLVKNI 360 Query: 361 ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELD 420 ER I LP E + R + + + Sbjct: 361 ERYTGNRIEVHTLPGLEPTQRP------------------STGRPGNGRPRGNGPRGGYE 402 Query: 421 LETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRER 480 + + G+R D R R R+D P R D G RG + Sbjct: 403 KRSFGDRSEPRSYGDRPRGDSRDNRDRGYRGDARRNDGAPARRFDNGVRGPSDVPRMTSE 462 Query: 481 RDVGD 485 + G Sbjct: 463 QTAGP 467 Score = 41.6 bits (97), Expect = 0.099, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 3/103 (2%) Query: 529 STIELPKGMPGEVLQHFTRTRILNKPM-NMQLLGDAQPHTGGERRGGGRGFGGE-RREGG 586 S + +G + ++ +T RI + ++ G R G G G + Sbjct: 347 SFAGMREGGLVKNIERYTGNRIEVHTLPGLEPTQRPSTGRPGNGRPRGNGPRGGYEKRSF 406 Query: 587 RNFSGERREGGR-GDGRRFSGERREGRAPRRDDSTGRRRFGGD 628 + S R G R R + +R RR+D RRF Sbjct: 407 GDRSEPRSYGDRPRGDSRDNRDRGYRGDARRNDGAPARRFDNG 449 >UniRef50_B2UL73 DEAD/DEAH box helicase domain protein n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UL73_AKKM8 Length = 423 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 156/422 (36%), Positives = 240/422 (56%), Gaps = 8/422 (1%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 TTF +LGL APIL L +L Y+ P+PIQA CIP LL +D++G+AQTG+GKTAAF+LP Sbjct: 2 VSTTFRELGLSAPILRQLENLEYKTPTPIQAACIPLLLQNKDLMGLAQTGTGKTAAFALP 61 Query: 64 LLQNLDPELKAP-----QILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQ 118 L+Q L P + L+L+PTRELA Q+ E + +++ + ++ ++GG Y Q Sbjct: 62 LIQQLSERSGKPPGRRVRALILSPTRELAAQIHENIRAYARGLH-LSTAVIFGGVGYASQ 120 Query: 119 LRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP 178 + L G I+V TPGRL+DHL+R T+ L + L+LDEAD ML MGF ++ I+++IP Sbjct: 121 FKELAGGLDILVATPGRLIDHLERRTVSLDGVETLILDEADHMLDMGFAPALKKIVSKIP 180 Query: 179 EGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTV-WGMRKNEALV 237 T +FSATMP+ IR++ + +++P+ VR+ +T + Q V K + Sbjct: 181 RKRHTQMFSATMPDNIRQLAQTLLQKPETVRVSPPSSTADRVEQFLCMVGSQSEKRLLTL 240 Query: 238 RFLEAED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRL 296 L+ ++ +IF RT++ +A L Y ++A++GD +Q RE+ L + G+ Sbjct: 241 ELLKQQELPGRTLIFTRTRHGADRLASFLSGKDYPASAIHGDKSQGRRERMLREFRSGKT 300 Query: 297 DILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRL 356 +L+ATD+AARG+DV+ + LV+NYD+P + E YVHRIGRT RAG AG+A+ E R Sbjct: 301 PVLVATDIAARGIDVKDVRLVINYDLPEEPEVYVHRIGRTARAGAAGQAIALCSPEEIRK 360 Query: 357 LRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEG 416 RN+ + + +P + R + + K ++ R Sbjct: 361 ARNVHKLLGRLLPVHASSASVPAELRAVPEARRKRSSPMQEKRSAPRREPRKGYGRNGSR 420 Query: 417 EE 418 E Sbjct: 421 AE 422 >UniRef50_B6BTD3 Dead/deah box helicase domain protein n=1 Tax=beta proteobacterium KB13 RepID=B6BTD3_9PROT Length = 444 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 148/375 (39%), Positives = 233/375 (62%), Gaps = 9/375 (2%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 +F++ G PI +A++ + Y P+PIQ +CIP +L+G+DVL AQTG+GKTAAF LPLL Sbjct: 1 MSFSNFGFIPPIGKAISRINYSTPTPIQEQCIPVVLSGKDVLASAQTGTGKTAAFCLPLL 60 Query: 66 QNLDPELKA-------PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQ 118 ++ + K P +L+L+PTRELA Q+ + + FS H N+V++ GG Y +Q Sbjct: 61 NLVEKKPKHKHKRNISPDVLILSPTRELATQIEQELKRFS-HFMDTNIVSVVGGVSYKLQ 119 Query: 119 LRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP 178 + L+ +V TPGRL+D +K+ ++L + LV+DEAD ML MGFI D++ I Sbjct: 120 NKLLKSNVNFLVATPGRLMDLVKQRKINLKHIDALVIDEADRMLDMGFIPDIKKIFESTS 179 Query: 179 EGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTV-WGMRKNEALV 237 + Q +F+AT+ + I +I ++F+K+PQ + ++ + +I Q + V +K LV Sbjct: 180 QDQQVLMFTATLNKQIEKIAQQFLKDPQRIAVEQENKSNKNIQQIAYPVADYNQKKLVLV 239 Query: 238 RFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLD 297 L D + AIIF TK +++ L + S L+GDM+Q R +T+ R K+ + Sbjct: 240 DVLNEADLNQAIIFTATKREADRLSDELYLMNHRSKTLHGDMSQRERTRTINRFKNNEIQ 299 Query: 298 ILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLL 357 IL+ATDVAARG+DV+ I+ V+N+D+P E Y+HRIGRTGRA R G+A+ V ++E+ +L Sbjct: 300 ILVATDVAARGIDVDDITHVINFDLPRQVEDYIHRIGRTGRAERKGKAISLVIDKEKFML 359 Query: 358 RNIERTMKLTIPEVE 372 + IE+ + I ++ Sbjct: 360 QKIEKYANIKIEVIK 374 >UniRef50_Q7UJ92 Putative ATP-dependent RNA helicase rhlE n=1 Tax=Rhodopirellula baltica RepID=Q7UJ92_RHOBA Length = 485 Score = 545 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 175/482 (36%), Positives = 248/482 (51%), Gaps = 18/482 (3%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 F DLGL P+L+ L GYE P+PIQA+ IP +L+G DVLG AQTG+GKTAAF+LP+L Sbjct: 2 NKFEDLGLTGPLLQGLEQAGYETPTPIQAQSIPEILDGNDVLGAAQTGTGKTAAFALPIL 61 Query: 66 QNL---DPELKAP-------------QILVLAPTRELAVQVAEAMTDFSKHMRGVNVVAL 109 Q + D E + P + LVL+PTREL+ Q+ + K R + + Sbjct: 62 QIMWEDDQERREPSKRRGGRPGRRPIRTLVLSPTRELSAQIEANFRIYGKKTR-LRSTVI 120 Query: 110 YGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIED 169 +GG + Q+R L+ G +V TPGRLLD + +G +DL + LVLDEAD ML MGF+ D Sbjct: 121 FGGVNQNPQVRELQSGVDTLVATPGRLLDLVNQGFIDLKDVEILVLDEADHMLDMGFLPD 180 Query: 170 VETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWG 229 V+ I+ +P Q LFSATMP IR++ + +P ++I T I QS V Sbjct: 181 VKRILKFLPRDRQNLLFSATMPGPIRKLADEILVDPVTIQIAPQKPTVERIEQSICFVAQ 240 Query: 230 MRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLE 289 K L F+E + + ++F RTK+ VA L + G +AA++G+ QA R +TL Sbjct: 241 ADKPRLLNHFIETKATGSTLVFTRTKHGADAVARRLVKAGVKAAAIHGNKTQANRVRTLN 300 Query: 290 RLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFV 349 + K+ LD+L+ATDVAARG+D++ I V+NYD P E+YVHRIGRTGRAGR G ++F Sbjct: 301 KFKNDELDVLVATDVAARGIDIDGIQTVINYDTPNTPEAYVHRIGRTGRAGREGETVMFC 360 Query: 350 ENRERRLLRNIERTMKLTIPEVE-LPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLS 408 E + IER +KL IP LP + + E + S Sbjct: 361 GGHETKFFIAIEREIKLQIPVATGLPGCQPRPLQDPESGDKASSRSGGRSGGGGQSGGGR 420 Query: 409 KIQPTAEGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGP 468 + + + + E ++ R G ++ RG Sbjct: 421 SRSGSGAQGGTGGGSKPGGRRRRGRAEGSVSGRGSTVGRKSAGSEAGKSGGSKNNRGRGG 480 Query: 469 RG 470 R Sbjct: 481 RP 482 >UniRef50_D1H3Q8 Whole genome shotgun sequence of line PN40024, scaffold_4.assembly12x (Fragment) n=14 Tax=Viridiplantae RepID=D1H3Q8_VITVI Length = 568 Score = 544 bits (1403), Expect = e-153, Method: Composition-based stats. Identities = 151/372 (40%), Positives = 216/372 (58%), Gaps = 14/372 (3%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +F D+GL I++ + Y +P+ IQA+ +P L+GRD+LG A+TGSGKTAAF++P++Q Sbjct: 124 SFTDMGLHQSIMKDITFHEYTRPTFIQAQAMPVALSGRDLLGCAETGSGKTAAFAIPMIQ 183 Query: 67 NLDPEL-----KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 + + P LVLAPTRELA Q+ + + FS+ + + GG Q Sbjct: 184 HCLAQPPVRRGDGPLALVLAPTRELAQQIEKEVKAFSRSLDSFRTAIVVGGTNISEQRSE 243 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 LR G IVV TPGR + HL+ G LS++S +VLDEAD ML MGF + +M +P+ H Sbjct: 244 LRAGVNIVVATPGRFIHHLQEGNTSLSRISFVVLDEADRMLDMGFEPQIREVMQNLPQKH 303 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 QT LFSATMP I + + ++ P +V++ ++SQ V K + L+ L Sbjct: 304 QTLLFSATMPMEIETLAQEYLNNPVQVKVGKVSCPTANVSQILEKVSESEKIDGLLALLV 363 Query: 242 AE---------DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLK 292 E F I+FV K EVAEAL G + AL+G +QA RE L + Sbjct: 364 EEASQAERCGRPFPLTIVFVERKTRCDEVAEALVAQGLRAVALHGGRSQAEREAALRDFR 423 Query: 293 DGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENR 352 +G +IL+ATDVA+RGLDV ++ V+N D+P E+YVHRIGRTGRAG G+A F +R Sbjct: 424 NGATNILVATDVASRGLDVTGVAHVINLDLPKAMENYVHRIGRTGRAGSTGQATSFYTDR 483 Query: 353 ERRLLRNIERTM 364 + L+ +I + + Sbjct: 484 DVFLVAHIRKAI 495 >UniRef50_B5IG60 DEAD/DEAH box helicase domain protein n=2 Tax=Aciduliprofundum boonei T469 RepID=B5IG60_9EURY Length = 451 Score = 544 bits (1403), Expect = e-153, Method: Composition-based stats. Identities = 151/384 (39%), Positives = 232/384 (60%), Gaps = 6/384 (1%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F D+ + AL + + +P+ +Q + IP + GRD++ ++TGSGKT AF +P+ +N Sbjct: 6 FEDMSISKGTKNALKEHNFVEPTEVQEKAIPLAIKGRDLIVQSKTGSGKTLAFLIPIFEN 65 Query: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127 L+ L+ +VL PTRELA QV K G V +YGG + Q+ L+ G Sbjct: 66 LNSGLE---AIVLVPTRELAQQVERVARSIGKA-HGKRTVVIYGGAPMERQIAGLK-GAS 120 Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187 +V+GTPGR++D ++RG L+L+ + VLDEAD ML MGFI+D++ I+ + P+ Q LFS Sbjct: 121 MVIGTPGRVMDLMRRGYLNLNGIRFFVLDEADRMLDMGFIDDIKWILQKTPKDKQMMLFS 180 Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 ATMP I + RR+MK P+++ + T +++Q Y V + K L L +E Sbjct: 181 ATMPPEIISLARRYMKNPEKIILSEDEITAENVAQYYVEVGEINKIAKLSSLLISERGKY 240 Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 +IF T+ T +AE L++ G+ + AL+GDM QA R +T++ K G++DIL++TDVAAR Sbjct: 241 -LIFCNTRRKTKNIAEILQKYGFKAFALHGDMRQATRTRTMDAFKQGKIDILVSTDVAAR 299 Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 G+DV I+ VVNYD+P+ + YVHRIGRTGR G+A+ FV ++ R IE + Sbjct: 300 GIDVHGITHVVNYDVPLYPKDYVHRIGRTGRMDAHGKAITFVTREDKEYFRRIEDFIGKR 359 Query: 368 IPEVELPNAELLGKRRLEKFAAKV 391 IP++E+ N + +R K + + Sbjct: 360 IPKMEIKNVGKIKERIDYKEISDI 383 >UniRef50_B9N3Z4 Predicted protein n=9 Tax=Spermatophyta RepID=B9N3Z4_POPTR Length = 775 Score = 544 bits (1403), Expect = e-153, Method: Composition-based stats. Identities = 185/672 (27%), Positives = 294/672 (43%), Gaps = 91/672 (13%) Query: 2 AEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFS 61 +E E + LGL +++ L + G PIQ + L GRD++ A+TG+GKT AF Sbjct: 129 SEDELDVSKLGLPHRLVQTLQNRGITHLFPIQRAVLIPALEGRDLIARAKTGTGKTLAFG 188 Query: 62 LPLLQNLDPEL----------KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYG 111 +P+++ L + + P++LVLAPTRELA QV + + + + + ++ V +YG Sbjct: 189 IPIIKRLTEDAELRGSQRRTGRLPKVLVLAPTRELAKQVEKEIKESAPY---LSSVCVYG 245 Query: 112 GQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVE 171 G Y Q AL +G +VVGTPGR++D LK +L L ++ LVLDEAD+ML GF EDVE Sbjct: 246 GVSYVTQQSALSRGVDVVVGTPGRIIDLLKGNSLKLGEVEYLVLDEADQMLSFGFEEDVE 305 Query: 172 TIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRI--QSSVTTRPDISQSYWTVWG 229 I+ +P Q+ LFSATMP ++++ R+++ P ++ + I + Sbjct: 306 VILENLPSKRQSMLFSATMPTWVKKLARKYLDNPLQIDLVGDQEEKLAEGIKLYALSATA 365 Query: 230 MRKNEALVRFLEAE-DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTL 288 K L + IIF +TK EV+ AL S AL+GD++Q RE+TL Sbjct: 366 ASKRTILSDLVTVYAKGGKTIIFTQTKRDADEVSMALTNT-IASEALHGDISQHQRERTL 424 Query: 289 ERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLF 348 + G+ +L+ATDVA+RGLD+ + L+++Y++P D+E++VHR GRTGRAG+ G A+L Sbjct: 425 NGFRQGKFTVLVATDVASRGLDIPNVDLIIHYELPNDAETFVHRSGRTGRAGKEGTAILM 484 Query: 349 VENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLS 408 + +RR +R++ER V P E + + E+ A + + ++ + Sbjct: 485 FTSSQRRTVRSLERDAGCKFEFVSPPAIEEVLESSAEQVVATL-SGVHPESVEFFTPTAQ 543 Query: 409 KIQPTAEGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGP 468 K+ L + + R + R P Sbjct: 544 KLIEEQGTNALAAALAH--------------LSGFSQPPSSRSLISHAQGWATLQLTRDP 589 Query: 469 RGDREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASH 528 R + R + G +++ ++ +G I + A Sbjct: 590 TYSRGF------------------------LSARSVTGFLSDVYPAAADEVGKIHVIADE 625 Query: 529 ----STIELPKGMPGEVL-QHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGER- 582 + +LP+ + E+L + + K + L D P R R Sbjct: 626 RVQGAVFDLPEEIAKELLNKQIPPGNTIAKITKLPALQDDGPPGDFYGRFSSRDRPARGG 685 Query: 583 --------------------------REGGRNFSGERREGG--RGDGRRFS-GERREGRA 613 R GGR+ S E R G + G RR R Sbjct: 686 PRGQRGGFRSSRGRGSGRDSDDGGTYRRGGRSNSNENSWSQMSRSSGDDWLIGGRRSSRP 745 Query: 614 PRRDDSTGRRRF 625 P RD S G F Sbjct: 746 PSRDRSFGGSCF 757 >UniRef50_D2V713 ATP-dependent RNA helicase n=1 Tax=Naegleria gruberi RepID=D2V713_NAEGR Length = 629 Score = 544 bits (1402), Expect = e-153, Method: Composition-based stats. Identities = 134/386 (34%), Positives = 208/386 (53%), Gaps = 22/386 (5%) Query: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67 F + L +++ + G+ KP+P+Q IP +L GRD+L AQTGSGKT AF P++ N Sbjct: 154 FKEANLPPKLMQNIERAGFGKPTPVQKHSIPIVLAGRDLLSCAQTGSGKTCAFLFPIISN 213 Query: 68 LDPELKA----------------PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYG 111 L + P +L++APTREL+ Q+ + F+ H G V YG Sbjct: 214 LMTQPGYETVMPHPELMDTLVTCPSVLIMAPTRELSTQIYDESRKFTYHT-GRRTVVAYG 272 Query: 112 GQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVE 171 G QL+ L +G I+V TPGRL+D + RG++ L + LVLDEAD ML MGF + Sbjct: 273 GAAIQYQLKQLERGCDILVATPGRLVDLIDRGSISLHNVQYLVLDEADRMLDMGFEPQIR 332 Query: 172 TIMAQI----PEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTV 227 I+ + P T +FSAT P+ I+ + R F+ + + +T +I Q + Sbjct: 333 YIVEKTGMPAPGQRITLMFSATFPKNIQTLARDFLHNNLNLTVGRVGSTHENILQKFVYC 392 Query: 228 WGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQT 287 K + ++ + + + ++FV+TK + L +NG+ S++++GD Q RE Sbjct: 393 KDDEKRDLMLEAIASVET-LTLVFVKTKKEASILEYFLMKNGFKSSSIHGDKTQRERETA 451 Query: 288 LERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALL 347 LE + G IL+ATDVA+RGLD+ + V+NYD+P + E YVHRIGRTGRAG G + Sbjct: 452 LENFRRGITPILVATDVASRGLDINDVGHVINYDLPENIEDYVHRIGRTGRAGNTGISTS 511 Query: 348 FVENRERRLLRNIERTMKLTIPEVEL 373 F ++ ++ ++ ++ EV Sbjct: 512 FFTDKNNQIADDLITVLEEAKQEVPP 537 >UniRef50_O97031 DjVLGA n=1 Tax=Dugesia japonica RepID=O97031_DUGJA Length = 726 Score = 544 bits (1402), Expect = e-153, Method: Composition-based stats. Identities = 139/384 (36%), Positives = 207/384 (53%), Gaps = 18/384 (4%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 T+F +L L + ++ Y +P+P+Q +P ++ RD++ AQTGSGKTAAF +PLL Sbjct: 211 TSFLELKLHPIVSHNISLTQYTRPTPVQRYAVPIIMQRRDLMACAQTGSGKTAAFLIPLL 270 Query: 66 QNL------------DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQ 113 + + + P L+LAPTRELAVQ+ + FS + V +YGG+ Sbjct: 271 SMMYQDGPGNSLSHSGYKKEYPVALILAPTRELAVQIYDEARKFS-YRSLVRPCVVYGGR 329 Query: 114 RYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETI 173 QL+ + QG ++V TPGRL D L+R + L + LVLDEAD ML MGF + I Sbjct: 330 DIRGQLQDISQGCNMLVATPGRLSDMLERCKIGLDCIRYLVLDEADRMLDMGFEPQIRKI 389 Query: 174 MAQI----PEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWG 229 + Q P QT +FSAT P I+ + F+K+ +R+ +T +I+Q V Sbjct: 390 VEQTNMPPPGQRQTLMFSATFPREIQMLASDFLKDYLFLRVGKVGSTSQNITQRIVYVDE 449 Query: 230 MRKNEALVRFLEAEDFDA-AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTL 288 K + L+ L D D+ ++FV TK + L G A+++GD +Q+ RE L Sbjct: 450 NEKRDHLLDILTDIDSDSLILVFVETKRGADALEGFLHTEGSCVASIHGDRSQSDRELAL 509 Query: 289 ERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLF 348 + ++G IL+AT VAARGLD+ + V+NYD+P D E YVHRIGRTGR G G A+ F Sbjct: 510 QSFREGSTPILVATRVAARGLDIPNVKFVINYDLPTDIEEYVHRIGRTGRVGNLGEAISF 569 Query: 349 VENRERRLLRNIERTMKLTIPEVE 372 ++ + + + + V Sbjct: 570 YTDKNNNVAKELVDILLEANQIVP 593 >UniRef50_B7P029 Vasa n=9 Tax=Coelomata RepID=B7P029_9BIVA Length = 801 Score = 544 bits (1402), Expect = e-153, Method: Composition-based stats. Identities = 142/377 (37%), Positives = 208/377 (55%), Gaps = 15/377 (3%) Query: 2 AEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFS 61 +F + G+ + L +EKP+P+Q IP +++GRD++ AQTGSGKTAAF Sbjct: 348 PASIKSFEEAGIYDGFMTNLVKAHFEKPTPVQKYSIPIVMSGRDLMACAQTGSGKTAAFL 407 Query: 62 LPLLQNLDPEL---------KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGG 112 LP+L + + PQ LV+APTRELA+Q+ FS + V LYGG Sbjct: 408 LPVLTGMMKNGLTGSAFSDVQEPQALVVAPTRELALQIFNDARKFSHGTM-LRPVVLYGG 466 Query: 113 QRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVET 172 QL+ + G IVVGTPGRL+D + +G + L+KL L+LDEAD ML MGF D++ Sbjct: 467 TSVGYQLKQVENGAHIVVGTPGRLIDVINKGKISLAKLKYLILDEADRMLDMGFGPDIKK 526 Query: 173 IMAQ--IPE--GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVW 228 I+ + PE QT +FSAT PE I+++ F+ + + + D++Q ++ V Sbjct: 527 IVHELGTPEKTERQTLMFSATFPEEIQKLAGDFLNDYLFLTVGRVGGACSDVTQHFFQVD 586 Query: 229 GMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTL 288 +K + L L D ++FV K +A L +G+ + +++GD Q RE+ L Sbjct: 587 RQQKRQKLCDILSESGADKTLVFVEQKRNADFLASYLSESGFPTTSIHGDRLQREREEAL 646 Query: 289 ERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLF 348 K G+ ILIAT VAARGLD+ + V+NYD+P + YVHRIGRTGR G G+A F Sbjct: 647 RDFKQGKAPILIATSVAARGLDIPNVKHVINYDLPQSIDEYVHRIGRTGRCGNLGKATSF 706 Query: 349 VENR-ERRLLRNIERTM 364 + L + + R + Sbjct: 707 FSEDGDGSLAKPLMRIL 723 >UniRef50_P24346 Putative ATP-dependent RNA helicase an3 n=63 Tax=Eukaryota RepID=DDX3_XENLA Length = 697 Score = 543 bits (1401), Expect = e-153, Method: Composition-based stats. Identities = 141/389 (36%), Positives = 207/389 (53%), Gaps = 24/389 (6%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 +F D+ + I+ + Y +P+P+Q IP ++ RD++ AQTGSGKTAAF LP+L Sbjct: 222 SFHDVTMGEIIMGNIQLTRYTRPTPVQKHAIPIIIEKRDLMACAQTGSGKTAAFLLPILS 281 Query: 67 NLDPELKA------------------PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVA 108 + + P LVLAPTRELAVQ+ E F+ + V Sbjct: 282 QIYADGPGDAMKHLQENGRYGRRKQFPLSLVLAPTRELAVQIYEEARKFA-YRSRVRPCV 340 Query: 109 LYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIE 168 +YGG Q+R L +G ++V TPGRL+D ++RG + L LVLDEAD ML MGF Sbjct: 341 VYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEP 400 Query: 169 DVETIMAQ--IPEG--HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSY 224 + I+ Q +P QT +FSAT P+ I+ + R F+ E + + +T +I+Q Sbjct: 401 QIRRIVEQDTMPPKGVRQTMMFSATFPKEIQILARDFLDEYIFLAVGRVGSTSENITQKV 460 Query: 225 WTVWGMRKNEALVRFLEAEDFDA-AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQAL 283 V M K L+ L A D+ ++FV TK + + L GY +++GD +Q Sbjct: 461 VWVEEMDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRD 520 Query: 284 REQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAG 343 RE+ L + + G+ IL+AT VAARGLD+ + V+N+D+P D E YVHRIGRTGR G G Sbjct: 521 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 580 Query: 344 RALLFVENRERRLLRNIERTMKLTIPEVE 372 A F + + +++ + EV Sbjct: 581 LATSFFNEKNINITKDLLDLLVEAKQEVP 609 >UniRef50_Q15T34 DEAD/DEAH box helicase-like n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15T34_PSEA6 Length = 458 Score = 543 bits (1401), Expect = e-153, Method: Composition-based stats. Identities = 150/468 (32%), Positives = 240/468 (51%), Gaps = 15/468 (3%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 +F LGL+ ++ A+ GY + IQ E IP +L D+L +AQTG+GKTAAF+LPLL Sbjct: 1 MSFEALGLRDELIHAIATQGYSVATDIQREAIPLVLAQHDLLAVAQTGTGKTAAFTLPLL 60 Query: 66 QNLDPEL----KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121 Q L + + + L++ PTRELA QVA ++ +S + + A+YGG R + Q+ Sbjct: 61 QRLAAKQSTKVQGVRSLIVTPTRELAAQVAISVEIYSTQL-NIRSFAVYGGVRIEPQIAQ 119 Query: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 L++G +++ TPGRLLD ++ L L LV DEAD ML +GFI+DV+ I + +P Sbjct: 120 LQEGVDVLIATPGRLLDLYEQRALHFENLEILVFDEADRMLDLGFIDDVKRIQSLLPVKR 179 Query: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 QT LFSAT + I+ R + P+ + + + +T ++Q++ + RK+ AL++ ++ Sbjct: 180 QTLLFSATFSKQIKHFAREMLNAPKTIEVSAVNSTVDLVAQTFHPIEQARKSAALIQLIQ 239 Query: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 + ++F+RTK + LE G +A+++ + Q R Q L K G + +L+A Sbjct: 240 QHRWSQTLVFIRTKRTADALVTELEDAGIAAASIHANRTQHARTQALNAFKAGEIQVLVA 299 Query: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 TD+AARG+DV ++ VVNYD+P E YVHRIGRTGRAG G A+ E L+++E Sbjct: 300 TDIAARGIDVSQLPCVVNYDLPYVPEDYVHRIGRTGRAGNTGTAISLFSPDEISQLQSLE 359 Query: 362 RTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDL 421 R + + L + A K ++ S++ R + E Sbjct: 360 RYLDQHLKPSTLVGFAPKDQVTKSWSANKANTRVNSAEKPTSRNM----------ENTKH 409 Query: 422 ETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPR 469 K+ + + + P + +G R R Sbjct: 410 VKGKPPAAKLNIDDEDDELYGNFEADPHTSSSRKQHKGSAGGAKRSRR 457 >UniRef50_B9SM44 Dead box ATP-dependent RNA helicase, putative n=2 Tax=Magnoliophyta RepID=B9SM44_RICCO Length = 650 Score = 543 bits (1401), Expect = e-153, Method: Composition-based stats. Identities = 146/396 (36%), Positives = 206/396 (52%), Gaps = 25/396 (6%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 + TFA++ L + + Y KP+P+Q IP L GRD++ AQTGSGKTAAF Sbjct: 183 VPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAF 242 Query: 61 SLPLLQNLDPELKA-------------PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVV 107 P++ + P L+L+PTREL++Q+ E FS + GV VV Sbjct: 243 CFPIISGIMKMQGQSAQRPLRGARMVYPLALILSPTRELSMQIHEEARKFS-YQTGVKVV 301 Query: 108 ALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFI 167 YGG + QLR L +G I+V TPGRL+D L+R + L + L LDEAD ML MGF Sbjct: 302 VAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMVRYLALDEADRMLDMGFE 361 Query: 168 EDVETIMAQI----PEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQS 223 + I+ Q P QT LFSAT P+ I+R+ F+ + + ++ I Q Sbjct: 362 PQIRKIVEQNDMPRPGARQTMLFSATFPKEIQRLATDFLFNYIFLAVGRVGSSTDLIIQR 421 Query: 224 YWTVWGMRKNEALVRFLEAEDFD-------AAIIFVRTKNATLEVAEALERNGYNSAALN 276 V K L+ L A+ + ++FV TK + L NG+ + +++ Sbjct: 422 VEFVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADSLEHWLYVNGFPATSIH 481 Query: 277 GDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRT 336 GD +Q REQ L + G IL+ATDVAARGLD+ ++ VVN+D+P D + YVHRIGRT Sbjct: 482 GDRSQQEREQALRSFRSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRT 541 Query: 337 GRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVE 372 GRAG++G A F L + M+ + EV Sbjct: 542 GRAGKSGLATAFFNEGNASLAMALADLMQESNQEVP 577 >UniRef50_C7N178 DNA/RNA helicase, superfamily II n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N178_SLAHD Length = 657 Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats. Identities = 178/628 (28%), Positives = 268/628 (42%), Gaps = 9/628 (1%) Query: 3 EFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSL 62 TF + GL A L A+ DLGYE+P+PIQ + IP +L GRD++ A+TG+GKTAAF+L Sbjct: 4 NTIATFDESGLSATALAAVYDLGYEEPTPIQQQAIPVVLEGRDLIAAAKTGTGKTAAFAL 63 Query: 63 PLLQNL--DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 P + L + + P ++++ PTRELA+Q++E +K VV L GG Y Q++ Sbjct: 64 PTMDKLPYAGKGEGPVMVIVTPTRELAMQISEVCETIAKRT-NHRVVTLLGGVSYTPQIK 122 Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 LR G I++ TPGRLLD +++ DL + LVLDEAD ML MGF V I+ P Sbjct: 123 KLRSGCDIIIATPGRLLDLMRQHEADLDLVQVLVLDEADRMLDMGFWPQVSEIVDATPSE 182 Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 QT LFSAT+ + ++ + P+ + I T + Q K L F+ Sbjct: 183 RQTLLFSATIDRSQDKVMFSLLNHPEIIEISHRGDTADLVDQYIIWTGRREKPALLNAFI 242 Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300 + I+F +TK L + G + A++ D +QA R++ LER ++G+ +++ Sbjct: 243 REKGGFRVIVFTKTKGGADNCTRRLCKIGIGAEAIHADRSQAQRQRALERFREGKTHVIV 302 Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 ATDV ARG+DV + VVNYD+PM E YVHRIGRTGRAG AG A+ FV + LLR+I Sbjct: 303 ATDVLARGIDVPEVDYVVNYDLPMMPEDYVHRIGRTGRAGVAGYAVSFVTPDTKNLLRSI 362 Query: 361 ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELD 420 ++ + I +E E + + K A + E + + R + + + ++ Sbjct: 363 QKFIGEDIQVMEFKAGEDAYEP-VGKDHALAASEEEHAPKRKDRDKKNGKKGGRKHDDRG 421 Query: 421 LETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRER 480 + + + ++ D + + R +R Sbjct: 422 GKKGGRKHDDREGARDDAPKGGKKKRKGNETNAEAKRARKQEGRDAEEQFMQGGRMPMKR 481 Query: 481 RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGE 540 Y VG DG + A G S Sbjct: 482 NTGEHTYNYAAFVGGKDGDSFKSKDKKSAKPGRGSKDSFQKRDDRNDRGH----GKKKDR 537 Query: 541 VLQHFTRTRILNKPMNMQLLGDAQP-HTGGERRGGGRGFGGERREGGRNFSGERREGGRG 599 + G ++ R G R F R G R Sbjct: 538 GYAKGGNGAKGGHGKRDERGGRSEEFRGEERYRYDRSGDDRFNRHSNERFDRGGRGGKRS 597 Query: 600 DGRRFSGERREGRAPRRDDSTGRRRFGG 627 R R R + GR+ F Sbjct: 598 GSSRPQSTRPTHRTDGASRNEGRKPFKS 625 >UniRef50_C7LND0 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LND0_DESBD Length = 545 Score = 542 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 169/526 (32%), Positives = 258/526 (49%), Gaps = 15/526 (2%) Query: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65 +F LGL+ +L+A+ + GYE P+ IQA+ IP +L GRD+L AQTG+GKT AF LP++ Sbjct: 1 MSFDQLGLRVELLKAIKNKGYEAPTAIQAQAIPVILAGRDILARAQTGTGKTDAFGLPIV 60 Query: 66 QNL---DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 Q L P+ L+L PTRELA+QV E++ +++ + + +GG R + Q+ L Sbjct: 61 QILGLTRGNGHHPRALILTPTRELALQVGESIKAYARKVS-LRCTVAFGGVRIEPQIARL 119 Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 +G I+V TPGRLLD + L L+ + LV DEAD ML +GF ++ I+ +P + Sbjct: 120 ERGIDILVATPGRLLDLASQEHLSLASIEFLVFDEADRMLDLGFSGEINAILDLLPTVRR 179 Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 T LFSAT I+ + + + +P+ + I + Q V K L+ +E Sbjct: 180 TMLFSATYTPQIKALAAKMLDKPEYIEITPDTAAAEAVQQKVHHVNKDNKLPLLLHLIEK 239 Query: 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 + D ++F RT+ + + L +G + AAL+G +Q+LR++TLE KDG++ IL+AT Sbjct: 240 QKQDRILVFARTRTWANRLTDKLAAHGISVAALHGSKSQSLRKRTLEEFKDGKIHILVAT 299 Query: 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 DVAARGLD+ + LVVNYDIP E YVHRIGRTGRAG +G A+ V ER LL IE Sbjct: 300 DVAARGLDISNLPLVVNYDIPNSPEDYVHRIGRTGRAGVSGIAVSLVSPEERNLLLAIED 359 Query: 363 TMKLTIPEVELPNAELLGK-----------RRLEKFAAKVQQQLESSDLDQYRALLSKIQ 411 ++ IP + + E+ A + ++L + + + + Sbjct: 360 LLRHQIPVEAVKGFTEDSDVPDFVLYRPGNPKSERNAPRAIKELVAKKSPAKLTVQGRGK 419 Query: 412 PTAEGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGD 471 + A+ PD+ R + + G D RG Sbjct: 420 KPKDAGPESTTRGNKNEKSDARKAEDKDTRPDSKPRGRSTGKPDARSGKDSGPDAKGRGR 479 Query: 472 REDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSR 517 R +R + GR + GA G+ + Sbjct: 480 RNERTDTRTGSEKNSGPESKGRGRRNERSEDSRAGADKRGGNTRGK 525 >UniRef50_Q9VHP0 ATP-dependent RNA helicase bel n=13 Tax=Eukaryota RepID=DDX3_DROME Length = 798 Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 142/404 (35%), Positives = 207/404 (51%), Gaps = 29/404 (7%) Query: 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60 + T+F D+ L I + Y+KP+P+Q IP ++NGRD++ AQTGSGKTAAF Sbjct: 290 VPPNITSFDDVQLTEIIRNNVALARYDKPTPVQKHAIPIIINGRDLMACAQTGSGKTAAF 349 Query: 61 SLPLLQNL---------------DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVN 105 +P+L + + P LVLAPTRELA Q+ E F+ + + Sbjct: 350 LVPILNQMYELGHVPPPQSTRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFA-YRSRMR 408 Query: 106 VVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMG 165 LYGG Q+R L +G ++V TPGRL D + RG + L + LVLDEAD ML MG Sbjct: 409 PAVLYGGNNTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMG 468 Query: 166 FIEDVETIMAQ--IPE--GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDIS 221 F + I+ Q +P QT +FSAT P+ I+ + F+ + + +T +I+ Sbjct: 469 FEPQIRRIVEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENIT 528 Query: 222 QSYWTVWGMRKNEALVRFL-------EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAA 274 Q+ V+ K L+ L E +IFV TK + E L + + + Sbjct: 529 QTILWVYEPDKRSYLLDLLSSIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTS 588 Query: 275 LNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIG 334 ++GD Q RE+ L + G IL+AT VAARGLD+ + V+N+D+P D E YVHRIG Sbjct: 589 IHGDRTQKEREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIG 648 Query: 335 RTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAEL 378 RTGR G G A F + R + ++ + T + E+P+ Sbjct: 649 RTGRMGNLGVATSFFNEKNRNICSDLLELLIET--KQEIPSFME 690 >UniRef50_B7IA63 DEAD/DEAH box helicase n=17 Tax=Acinetobacter RepID=B7IA63_ACIB5 Length = 615 Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 212/646 (32%), Positives = 294/646 (45%), Gaps = 61/646 (9%) Query: 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63 TFA+ L + +AL LG+ P+P+Q + IP L G+D+L +QTGSGKTAAF LP Sbjct: 1 MSKTFAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLP 60 Query: 64 LLQNLDPELK------------APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYG 111 L NL + P ILVL PTRELA QV++ F +HM+GV + A+ G Sbjct: 61 TLHNLAGQDTFVPFKERMKAVTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMG 120 Query: 112 GQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVE 171 G + Q++ L+ G Q+VV TPGRLLD + R L L K+ L++DEAD ML +GF ED+E Sbjct: 121 GMPFGKQIQQLK-GAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLE 179 Query: 172 TIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWG-M 230 I QT +FSAT + I R+ R M EP+ + I++ +T DI+Q+ G Sbjct: 180 AISDLAANRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFE 239 Query: 231 RKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLER 290 K + L +L E D A++F T+ T +AE L G++ AL+G M Q +R + L Sbjct: 240 HKKKLLTHWLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRS 299 Query: 291 LKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVE 350 +++GR IL+ATDVAARGLDV IS V+N+ +PM E YVHRIGRTGRAGR G+A+ Sbjct: 300 IREGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLAT 359 Query: 351 NRERRLLRNIERTMKLTIPEVELPNAE----LLGKRRLEKFAAKVQQQLESSDLDQYRAL 406 RER +R +E ++ + E+ E RR + Sbjct: 360 YRERGKIRALEDYLEARLNVSEIEGLEPSPPPARPRREGGRGGNGGRDGRRGGGFGGGRR 419 Query: 407 LSKIQPTAEGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDR 466 E + + +GER D P R R R + G DR R Sbjct: 420 FEGEGNFKRREGGRDDRPRRSFDDKPRGERPAFGGEDRPRREFNSDRPRREGGFEDRPKR 479 Query: 467 GPRGDREDRPRR----ERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNI 522 G+ R RR+ G + G +D R + Sbjct: 480 SFGGEDRPRREFNSDRPRREGGFEDRPKRSFGGEDR----------------PRREFNSD 523 Query: 523 KLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGER 582 + + P+ R+ KP RR G G +R Sbjct: 524 RPRREGGFNDKPRFDSN---DDNRGNRVDYKP----------------RRENGFGDRPQR 564 Query: 583 REGGRNFSGERREGGRGDGRRFSGERREGRAPRRD----DSTGRRR 624 GG + G R F GE R RA R + +S G RR Sbjct: 565 SFGGEDRPRREGGFGDRPKRSFGGEDRPRRAVREEHFNQESRGERR 610 >UniRef50_Q2BDP3 ATP-dependent RNA helicase n=2 Tax=Bacillus RepID=Q2BDP3_9BACI Length = 543 Score = 541 bits (1394), Expect = e-152, Method: Composition-based stats. Identities = 175/488 (35%), Positives = 270/488 (55%), Gaps = 3/488 (0%) Query: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66 F LG+ P++ L G ++P+ +Q + IP +L GRD++ AQTG+GKT AF LP+L+ Sbjct: 23 NFKHLGISDPLIHKLAAQGIDEPTAVQEKAIPIVLEGRDIIAQAQTGTGKTLAFILPILE 82 Query: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126 +DP + Q L++ PTRELA+Q+ + + M +NV+A+YGGQ + QL L++ Sbjct: 83 KIDPSNGSTQALIVTPTRELALQITSEVKKLIEDMPDLNVLAVYGGQDVEKQLHKLQRQT 142 Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186 QIVV TPGRLLDHL+RGT+ L ++S LVLDEAD+ML +GF+ ++E I++Q P QT LF Sbjct: 143 QIVVATPGRLLDHLRRGTVQLDEVSFLVLDEADQMLHIGFLNEMELIISQTPASRQTMLF 202 Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246 SATMP+ IR+++++ +KEP+ +RI+ + I Q K AL+ + + Sbjct: 203 SATMPDDIRKLSKKHLKEPESIRIEKTFVPEKAIEQLAIFTTDRAKQNALISRIREDRPF 262 Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 AIIF RT ++ +AL+ ++ L+GD+ QA RE+ +++ ++ + LIATDVAA Sbjct: 263 LAIIFCRTIRRATKLYDALKSQRFSCEELHGDLTQAKREKVMKKFRNAEIQFLIATDVAA 322 Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 RGLDVE ++ V NYDIP DSESYVHRIGRTGRAG+ G A+ F ++ L+ IE+ + + Sbjct: 323 RGLDVEGVTHVYNYDIPQDSESYVHRIGRTGRAGKDGLAVTFYAEKDEAALKAIEQELNI 382 Query: 367 TIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAA 426 +P+ E A EK ++ + + S + S+ + E + + Sbjct: 383 RLPKEE-STATANTTADGEKSSSGDKPKNRSDRDRRAGGAESRRRTGGRTEGRGSREVRS 441 Query: 427 ALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDM 486 + + D +R R++ R DR D + Sbjct: 442 TRSGERRNRSSEGRRADGEIRSYTHDERREN--GRRSGDRRSLSDGRRSSGGRSAERNPR 499 Query: 487 QLYRIEVG 494 G Sbjct: 500 PNGIRSSG 507 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 36/113 (31%), Gaps = 8/113 (7%) Query: 521 NIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGG 580 NI+L ST GE + + + N+ + G A+ R GRG Sbjct: 381 NIRLPKEESTATANTTADGE--KSSSGDKPKNRSDRDRRAGGAESRRRTGGRTEGRGSRE 438 Query: 581 ERREGGRNFSGERREGGRGDGR------RFSGERREGRAPRRDDSTGRRRFGG 627 R EG R DG E RR S GRR GG Sbjct: 439 VRSTRSGERRNRSSEGRRADGEIRSYTHDERRENGRRSGDRRSLSDGRRSSGG 491 Score = 41.6 bits (97), Expect = 0.098, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 27/99 (27%), Gaps = 3/99 (3%) Query: 530 TIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNF 589 E + + Q I + G +R Sbjct: 365 YAEKDEAALKAIEQELN---IRLPKEESTATANTTADGEKSSSGDKPKNRSDRDRRAGGA 421 Query: 590 SGERREGGRGDGRRFSGERREGRAPRRDDSTGRRRFGGD 628 RR GGR +GR R RR+ S+ RR G+ Sbjct: 422 ESRRRTGGRTEGRGSREVRSTRSGERRNRSSEGRRADGE 460 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.311 0.170 0.570 Lambda K H 0.267 0.0521 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,509,693,333 Number of Sequences: 3077464 Number of extensions: 292875258 Number of successful extensions: 1144438 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 10314 Number of HSP's successfully gapped in prelim test: 8336 Number of HSP's that attempted gapping in prelim test: 1015123 Number of HSP's gapped (non-prelim): 75390 length of query: 629 length of database: 1,040,396,356 effective HSP length: 135 effective length of query: 494 effective length of database: 624,938,716 effective search space: 308719725704 effective search space used: 308719725704 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.0 bits) S2: 97 (41.6 bits)