193 d2hoxa1 Probab=99.90   E-value=5.9e-21  Score=144.63  Aligned_columns=297  Identities=11%

Q ss_pred             HHCCCCCCCCCCHHHHHHHHHHHHHC--------CCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCH
Q ss_conf             84186678758989999999988644--------9987999388278999999999998763258998879997298613
Q batch____        69 SKFWHTGNGYTNEPVLRLAKKLIDAT--------FADRVFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHG  140 (406)
Q Consensus        69 ~~~~~~~~~~~~~~~~~la~~l~~~~--------~~~~v~~~~sGs~a~~~Al~~a~~~~~~~~~~~~~~ii~~~~~~Hg  140 (406)
                      ++.++...........+|.+.++++.        ...++++.++.+++...++......+.......+..+++..+.|..
T Consensus        88 ~~~~y~~~~~~~~~~~~L~~~i~~l~~~~g~~~~~~~~iv~t~G~~~~l~~a~~aL~~pGd~v~~~~p~~v~~~~p~y~~  167 (425)
T d2hoxa1          88 HRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPV  167 (425)
T ss_dssp             TTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHH
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHHH
T ss_conf             54565456643445289999999998850886788776999468899999999986488861235677435730023778


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf             36889851388543567777678837767769788997268886499854865898986789899999999998789689
Q batch____       141 RTLFTVSAGGQPAYSQDFAPLPADIRHAAYNDINSASALIDDSTCAVIVEPIQGEGGVVPASNAFLQGLRELCNRHNALL  220 (406)
Q Consensus       141 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~d~e~l~~~~~~~~~~v~~e~~~~~~G~~~~~~~~l~~l~~l~~~~g~~l  220 (406)
                      ...............              ..|.+++++.++++++++++++++||+|....           |++||+++
T Consensus       168 ~~~~~~~~~~~~~~~--------------~~d~~~~~~~~~~~~~~~~i~~P~NPtG~v~~-----------a~~~~~~~  222 (425)
T d2hoxa1         168 FREQTKYFDKKGYVW--------------AGNAANYVNVSNPEQYIEMVTSPNNPEGLLRH-----------AVIKGCKS  222 (425)
T ss_dssp             HHHHHHHSCCTTEEE--------------EEEGGGGTTCSCGGGEEEEEESSCTTTCCCCC-----------CSSTTCEE
T ss_pred             HHHHHHHCCCCCCCC--------------CCCHHHHHHHCCCCCEEEEECCCCCCCCEEEE-----------EEECCCEE
T ss_conf             999998559974442--------------47988999724888579998178888560654-----------23239689


Q ss_pred             EEECCCCCCCCCCCCCHHHHCCCCCCEEECCCHHC-CCCCCEEEEEC-HHHHHHHHHHHCCCCCCCCHHHHHHHHHHH--
Q ss_conf             98456436462478734775589851774130223-87610599873-899997765421366568778899999973--
Q batch____       221 IFDEVQTGVGRTGELYAYMHYGVTPDLLTTAKALG-GGFPVGALLAT-EECARVMTVGTHGTTYGGNPLASAVAGKVL--  296 (406)
Q Consensus       221 i~DEv~~~~g~~G~~~a~~~~~~~~di~t~sK~~~-~g~~~~~~~~~-~~~~~~~~~~~~~~t~~~~~~~~a~~~a~~--  296 (406)
                      |.||+|..+...+..   ...+....+.+|||.++ .|..+++.+.. +++...+.......+.+.+...+.++.+.+  
T Consensus       223 i~De~y~~~~~~~~~---~~~~~~i~~~S~SK~~g~~GlRiG~~i~~~~~i~~~l~~~~~~~~~~~s~~~Q~aA~~~L~~  299 (425)
T d2hoxa1         223 IYDMVYYWPHYTPIK---YKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKE  299 (425)
T ss_dssp             EEECTTCSTTTSCCC---SCBCCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHH
T ss_pred             EEECCCCCCCCCCCC---CCCCCEEEEEECCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHC
T ss_conf             971432343323333---45685499981551012332310189968989999999864105777368999999999602


Q ss_pred             -------HHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC---------------CCEECCCCCCEEEEEECCCCHHHHHHH
Q ss_conf             -------2117847999999999999999999987279---------------825046775069999738997899999
Q batch____       297 -------ELINTPEMLNGVKQRHDWFVERLNTINHRYG---------------LFSEVRGLGLLIGCVLNADYAGQAKQI  354 (406)
Q Consensus       297 -------~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~---------------~~~~v~g~g~~~~i~~~~~~~~~a~~l  354 (406)
                             ......++.+..++..+..++.+.+.+...+               ........+.+.|+.+..+....   +
T Consensus       300 ~~~~~~~~~~~~~~~~~~~r~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~~~~~~~~~~~~f~w~~~~~~~~~~---~  376 (425)
T d2hoxa1         300 VVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKD---C  376 (425)
T ss_dssp             HHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGGGCS---H
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHH---H
T ss_conf             0134565555489999999999999999999998635763003456554322100137787616998678980899---9


Q ss_pred             HHHHHHCCEEEECC-----CCCEEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf             99999689599827-----899899930789899999999999999999
Q batch____       355 SQEAAKAGVMVLIA-----GGNVVRFAPALNVSEEEVTTGLDRFAAACE  398 (406)
Q Consensus       355 ~~~l~e~Gi~~~p~-----g~~~iRi~~~~~~t~e~i~~~l~~l~~al~  398 (406)
                      ...|.++||++.|+     +++++|+  ++..+++++++++++|++.++
T Consensus       377 ~~lL~e~GI~v~pGs~FG~~~~~vRi--Sl~~~~e~ld~~l~rL~~~v~  423 (425)
T d2hoxa1         377 YQTFQNGRINTQNGVGFEASSRYVRL--SLIKTQDDFDQLMYYLKDMVK  423 (425)
T ss_dssp             HHHHHHTTEECEEGGGGTSCTTEEEE--ECSSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCEEEECCCCCCCCCCEEEE--EECCCHHHHHHHHHHHHHHHH
T ss_conf             99999669499717023898865999--913998999999999999872