Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP23845
DateThu Jan 5 11:39:52 GMT 2012
Unique Job ID41b2f3456239cc2e

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3izq1_
Top template information
PDB header:ribosomal protein,hydrolase
Chain: 1: PDB Molecule:elongation factor 1 alpha-like protein;
PDBTitle: structure of the dom34-hbs1-gdpnp complex bound to a translating2 ribosome
Confidence and coverage
Confidence:100.0% Coverage: 87%
414 residues ( 87% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLS
Secondary structure 
SS confidence 
Disorder  ????????????????????????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  SLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQY
Secondary structure 
SS confidence 
Disorder 
?????
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  TRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEETF
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  TRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSESMPWYSGPTLLEVLETVEIQRV
Secondary structure 
SS confidence 
Disorder 
?
??
????
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  VDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDRE
Secondary structure 
SS confidence 
Disorder  ?
??
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  EAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIA
Secondary structure 
SS confidence 
Disorder 
????????
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  GKKTRARVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIF
Secondary structure 
SS confidence 
Disorder 
??
?????????
??
Disorder confidence 
 
   .........430.........440.........450.........460.........470.....
Sequence  IDRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGDK
Secondary structure 
SS confidence 
Disorder 
??????????
?
??????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3izq chain 1

3D model

Region: 22 - 439
Aligned: 414
Modelled: 418
Confidence: 100.0%
Identity: 30%
PDB header:ribosomal protein,hydrolase
Chain: 1: PDB Molecule:elongation factor 1 alpha-like protein;
PDBTitle: structure of the dom34-hbs1-gdpnp complex bound to a translating2 ribosome

Phyre2

PDB 1g7c chain A

3D model

Region: 24 - 437
Aligned: 410
Modelled: 412
Confidence: 100.0%
Identity: 29%
PDB header:translation
Chain: A: PDB Molecule:elongation factor 1-alpha;
PDBTitle: yeast eef1a:eef1ba in complex with gdpnp

Phyre2

PDB 1zun chain B

3D model

Region: 19 - 435
Aligned: 392
Modelled: 390
Confidence: 100.0%
Identity: 57%
PDB header:transferase
Chain: B: PDB Molecule:sulfate adenylate transferase, subunit
PDBTitle: crystal structure of a gtp-regulated atp sulfurylase2 heterodimer from pseudomonas syringae

Phyre2

PDB 1skq chain B

3D model

Region: 25 - 439
Aligned: 400
Modelled: 400
Confidence: 100.0%
Identity: 30%
PDB header:translation
Chain: B: PDB Molecule:elongation factor 1-alpha;
PDBTitle: the crystal structure of sulfolobus solfataricus elongation2 factor 1-alpha in complex with magnesium and gdp

Phyre2

PDB 3agq chain A

3D model

Region: 6 - 456
Aligned: 385
Modelled: 410
Confidence: 100.0%
Identity: 25%
PDB header:translation,transferase
Chain: A: PDB Molecule:elongation factor ts, elongation factor tu 1, linker, q
PDBTitle: structure of viral polymerase form ii

Phyre2

PDB 3mmp chain C

3D model

Region: 21 - 439
Aligned: 354
Modelled: 378
Confidence: 100.0%
Identity: 27%
PDB header:transferase
Chain: C: PDB Molecule:elongation factor tu 2, elongation factor ts;
PDBTitle: structure of the qb replicase, an rna-dependent rna polymerase2 consisting of viral and host proteins

Phyre2

PDB 3p27 chain A

3D model

Region: 3 - 439
Aligned: 405
Modelled: 415
Confidence: 100.0%
Identity: 28%
PDB header:signaling protein
Chain: A: PDB Molecule:elongation factor 1 alpha-like protein;
PDBTitle: crystal structure of a translational gtpase (gdp form)

Phyre2

PDB 3mca chain A

3D model

Region: 7 - 437
Aligned: 365
Modelled: 375
Confidence: 100.0%
Identity: 27%
PDB header:translation regulation/hydrolase
Chain: A: PDB Molecule:elongation factor 1 alpha-like protein;
PDBTitle: structure of the dom34-hbs1 complex and implications for its role in2 no-go decay

Phyre2

PDB 1r5n chain A

3D model

Region: 6 - 439
Aligned: 387
Modelled: 401
Confidence: 100.0%
Identity: 27%
PDB header:translation
Chain: A: PDB Molecule:eukaryotic peptide chain release factor gtp-
PDBTitle: crystal structure analysis of sup35 complexed with gdp

Phyre2

PDB 1mj1 chain A

3D model

Region: 23 - 439
Aligned: 380
Modelled: 388
Confidence: 100.0%
Identity: 23%
PDB header:ribosome
Chain: A: PDB Molecule:elongation factor tu;
PDBTitle: fitting the ternary complex of ef-tu/trna/gtp and ribosomal proteins2 into a 13 a cryo-em map of the coli 70s ribosome

Phyre2

PDB 1d2e chain A

3D model

Region: 25 - 443
Aligned: 379
Modelled: 394
Confidence: 100.0%
Identity: 24%
PDB header:rna binding protein
Chain: A: PDB Molecule:elongation factor tu (ef-tu);
PDBTitle: crystal structure of mitochondrial ef-tu in complex with gdp

Phyre2

PDB 2bvn chain B

3D model

Region: 22 - 439
Aligned: 360
Modelled: 383
Confidence: 100.0%
Identity: 24%
PDB header:elongation factor
Chain: B: PDB Molecule:elongation factor tu;
PDBTitle: e. coli ef-tu:gdpnp in complex with the antibiotic2 enacyloxin iia

Phyre2

PDB 2hdn chain J

3D model

Region: 92 - 438
Aligned: 323
Modelled: 344
Confidence: 100.0%
Identity: 23%
PDB header:translation
Chain: J: PDB Molecule:elongation factor ef-tu;
PDBTitle: trypsin-modified elongation factor tu in complex with2 tetracycline at 2.8 angstrom resolution

Phyre2

PDB 2elf chain A

3D model

Region: 27 - 435
Aligned: 344
Modelled: 367
Confidence: 100.0%
Identity: 18%
PDB header:translation
Chain: A: PDB Molecule:protein translation elongation factor 1a;
PDBTitle: crystal structure of the selb-like elongation factor ef-pyl2 from methanosarcina mazei

Phyre2

PDB 1kk3 chain A

3D model

Region: 24 - 436
Aligned: 363
Modelled: 393
Confidence: 100.0%
Identity: 21%
PDB header:translation
Chain: A: PDB Molecule:eif2gamma;
PDBTitle: structure of the wild-type large gamma subunit of2 initiation factor eif2 from pyrococcus abyssi complexed3 with gdp-mg2+

Phyre2

PDB 2plf chain A

3D model

Region: 25 - 435
Aligned: 376
Modelled: 391
Confidence: 100.0%
Identity: 22%
PDB header:translation
Chain: A: PDB Molecule:translation initiation factor 2 gamma subunit;
PDBTitle: the structure of aif2gamma subunit from the archaeon2 sulfolobus solfataricus in the nucleotide-free form.

Phyre2

PDB 1s0u chain A

3D model

Region: 24 - 434
Aligned: 358
Modelled: 370
Confidence: 100.0%
Identity: 19%
PDB header:translation
Chain: A: PDB Molecule:translation initiation factor 2 gamma subunit;
PDBTitle: eif2gamma apo

Phyre2

PDB 1wb1 chain C

3D model

Region: 24 - 442
Aligned: 372
Modelled: 383
Confidence: 100.0%
Identity: 22%
PDB header:protein synthesis
Chain: C: PDB Molecule:translation elongation factor selb;
PDBTitle: crystal structure of translation elongation factor selb2 from methanococcus maripaludis in complex with gdp

Phyre2

PDB 3deg chain C

3D model

Region: 25 - 332
Aligned: 270
Modelled: 270
Confidence: 100.0%
Identity: 24%
PDB header:ribosome
Chain: C: PDB Molecule:gtp-binding protein lepa;
PDBTitle: complex of elongating escherichia coli 70s ribosome and ef4(lepa)-2 gmppnp

Phyre2

PDB 2ywf chain A

3D model

Region: 23 - 331
Aligned: 253
Modelled: 272
Confidence: 100.0%
Identity: 26%
PDB header:translation
Chain: A: PDB Molecule:gtp-binding protein lepa;
PDBTitle: crystal structure of gmppnp-bound lepa from aquifex aeolicus

Phyre2
1
c3izq1_
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c1g7cA_
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c1zunB_
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c1skqB_
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c3agqA_
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c3mmpC_
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c3p27A_
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c3mcaA_
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c1r5nA_
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c1mj1A_
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c1d2eA_
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c2bvnB_
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c2hdnJ_
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c2elfA_
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c1kk3A_
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c2plfA_
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c1s0uA_
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c1wb1C_
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c3degC_
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c2ywfA_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3izq1_
100.0 30 PDB header:ribosomal protein,hydrolase
Chain: 1: PDB Molecule:elongation factor 1 alpha-like protein;
PDBTitle: structure of the dom34-hbs1-gdpnp complex bound to a translating2 ribosome
2c1g7cA_
100.0 29 PDB header:translation
Chain: A: PDB Molecule:elongation factor 1-alpha;
PDBTitle: yeast eef1a:eef1ba in complex with gdpnp
3c1zunB_
100.0 57 PDB header:transferase
Chain: B: PDB Molecule:sulfate adenylate transferase, subunit
PDBTitle: crystal structure of a gtp-regulated atp sulfurylase2 heterodimer from pseudomonas syringae
4c1skqB_
100.0 30 PDB header:translation
Chain: B: PDB Molecule:elongation factor 1-alpha;
PDBTitle: the crystal structure of sulfolobus solfataricus elongation2 factor 1-alpha in complex with magnesium and gdp
5c3agqA_
100.0 25 PDB header:translation,transferase
Chain: A: PDB Molecule:elongation factor ts, elongation factor tu 1, linker, q
PDBTitle: structure of viral polymerase form ii
6c3mmpC_
100.0 27 PDB header:transferase
Chain: C: PDB Molecule:elongation factor tu 2, elongation factor ts;
PDBTitle: structure of the qb replicase, an rna-dependent rna polymerase2 consisting of viral and host proteins
7c3p27A_
100.0 28 PDB header:signaling protein
Chain: A: PDB Molecule:elongation factor 1 alpha-like protein;
PDBTitle: crystal structure of a translational gtpase (gdp form)
8c3mcaA_
100.0 27 PDB header:translation regulation/hydrolase
Chain: A: PDB Molecule:elongation factor 1 alpha-like protein;
PDBTitle: structure of the dom34-hbs1 complex and implications for its role in2 no-go decay
9c1r5nA_
100.0 27 PDB header:translation
Chain: A: PDB Molecule:eukaryotic peptide chain release factor gtp-
PDBTitle: crystal structure analysis of sup35 complexed with gdp
10c1mj1A_
100.0 23 PDB header:ribosome
Chain: A: PDB Molecule:elongation factor tu;
PDBTitle: fitting the ternary complex of ef-tu/trna/gtp and ribosomal proteins2 into a 13 a cryo-em map of the coli 70s ribosome
11c1d2eA_
100.0 24 PDB header:rna binding protein
Chain: A: PDB Molecule:elongation factor tu (ef-tu);
PDBTitle: crystal structure of mitochondrial ef-tu in complex with gdp
12c2bvnB_
100.0 24 PDB header:elongation factor
Chain: B: PDB Molecule:elongation factor tu;
PDBTitle: e. coli ef-tu:gdpnp in complex with the antibiotic2 enacyloxin iia
13c2hdnJ_
100.0 23 PDB header:translation
Chain: J: PDB Molecule:elongation factor ef-tu;
PDBTitle: trypsin-modified elongation factor tu in complex with2 tetracycline at 2.8 angstrom resolution
14c2elfA_
100.0 18 PDB header:translation
Chain: A: PDB Molecule:protein translation elongation factor 1a;
PDBTitle: crystal structure of the selb-like elongation factor ef-pyl2 from methanosarcina mazei
15c1kk3A_
100.0 21 PDB header:translation
Chain: A: PDB Molecule:eif2gamma;
PDBTitle: structure of the wild-type large gamma subunit of2 initiation factor eif2 from pyrococcus abyssi complexed3 with gdp-mg2+
16c2plfA_
100.0 22 PDB header:translation
Chain: A: PDB Molecule:translation initiation factor 2 gamma subunit;
PDBTitle: the structure of aif2gamma subunit from the archaeon2 sulfolobus solfataricus in the nucleotide-free form.
17c1s0uA_
100.0 19 PDB header:translation
Chain: A: PDB Molecule:translation initiation factor 2 gamma subunit;
PDBTitle: eif2gamma apo
18c1wb1C_
100.0 22 PDB header:protein synthesis
Chain: C: PDB Molecule:translation elongation factor selb;
PDBTitle: crystal structure of translation elongation factor selb2 from methanococcus maripaludis in complex with gdp
19c3degC_
100.0 24 PDB header:ribosome
Chain: C: PDB Molecule:gtp-binding protein lepa;
PDBTitle: complex of elongating escherichia coli 70s ribosome and ef4(lepa)-2 gmppnp
20c2ywfA_
100.0 26 PDB header:translation
Chain: A: PDB Molecule:gtp-binding protein lepa;
PDBTitle: crystal structure of gmppnp-bound lepa from aquifex aeolicus
21c2dy1A_
not modelled 100.0 20 PDB header:signaling protein, translation
Chain: A: PDB Molecule:elongation factor g;
PDBTitle: crystal structure of ef-g-2 from thermus thermophilus
22c1zo1I_
not modelled 100.0 21 PDB header:translation/rna
Chain: I: PDB Molecule:translation initiation factor 2;
PDBTitle: if2, if1, and trna fitted to cryo-em data of e. coli 70s2 initiation complex
23c3cb4D_
not modelled 100.0 23 PDB header:translation
Chain: D: PDB Molecule:gtp-binding protein lepa;
PDBTitle: the crystal structure of lepa
24c3e20A_
not modelled 100.0 17 PDB header:translation
Chain: A: PDB Molecule:eukaryotic peptide chain release factor gtp-binding
PDBTitle: crystal structure of s.pombe erf1/erf3 complex
25c3tr5C_
not modelled 100.0 22 PDB header:translation
Chain: C: PDB Molecule:peptide chain release factor 3;
PDBTitle: structure of a peptide chain release factor 3 (prfc) from coxiella2 burnetii
26c3e1yG_
not modelled 100.0 18 PDB header:translation
Chain: G: PDB Molecule:eukaryotic peptide chain release factor gtp-binding subunit
PDBTitle: crystal structure of human erf1/erf3 complex
27c1g7tA_
not modelled 100.0 19 PDB header:translation
Chain: A: PDB Molecule:translation initiation factor if2/eif5b;
PDBTitle: x-ray structure of translation initiation factor if2/eif5b2 complexed with gdpnp
28c2bm0A_
not modelled 100.0 24 PDB header:elongation factor
Chain: A: PDB Molecule:elongation factor g;
PDBTitle: ribosomal elongation factor g (ef-g) fusidic acid resistant2 mutant t84a
29c2xexA_
not modelled 100.0 23 PDB header:translation
Chain: A: PDB Molecule:elongation factor g;
PDBTitle: crystal structure of staphylococcus aureus elongation factor2 g
30c3izyP_
not modelled 100.0 24 PDB header:rna, ribosomal protein
Chain: P: PDB Molecule:translation initiation factor if-2, mitochondrial;
PDBTitle: mammalian mitochondrial translation initiation factor 2
31c1zn0B_
not modelled 100.0 26 PDB header:translation/biosynthetic protein/rna
Chain: B: PDB Molecule:elongation factor g;
PDBTitle: coordinates of rrf and ef-g fitted into cryo-em map of the2 50s subunit bound with both ef-g (gdpnp) and rrf
32d1f60a3
not modelled 100.0 36 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
33c2rdo7_
not modelled 100.0 20 PDB header:ribosome
Chain: 7: PDB Molecule:elongation factor g;
PDBTitle: 50s subunit with ef-g(gdpnp) and rrf bound
34c3b8hA_
not modelled 100.0 23 PDB header:biosynthetic protein/transferase
Chain: A: PDB Molecule:elongation factor 2;
PDBTitle: structure of the eef2-exoa(e546a)-nad+ complex
35c2h5eB_
not modelled 100.0 25 PDB header:translation
Chain: B: PDB Molecule:peptide chain release factor rf-3;
PDBTitle: crystal structure of e.coli polypeptide release factor rf3
36d1zunb3
not modelled 100.0 65 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
37d1jnya3
not modelled 100.0 38 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
38d1r5ba3
not modelled 100.0 35 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
39d2c78a3
not modelled 100.0 28 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
40d1zunb2
not modelled 100.0 39 Fold:Elongation factor/aminomethyltransferase common domain
Superfamily:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
Family:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
41d2dy1a2
not modelled 99.9 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
42d1d2ea3
not modelled 99.9 29 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
43d1n0ua2
not modelled 99.9 24 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
44d1f60a2
not modelled 99.9 18 Fold:Elongation factor/aminomethyltransferase common domain
Superfamily:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
Family:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
45d1jnya2
not modelled 99.9 16 Fold:Elongation factor/aminomethyltransferase common domain
Superfamily:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
Family:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
46c1mkyA_
not modelled 99.9 26 PDB header:ligand binding protein
Chain: A: PDB Molecule:probable gtp-binding protein enga;
PDBTitle: structural analysis of the domain interactions in der, a2 switch protein containing two gtpase domains
47c2hjgA_
not modelled 99.9 21 PDB header:hydrolase
Chain: A: PDB Molecule:gtp-binding protein enga;
PDBTitle: the crystal structure of the b. subtilis yphc gtpase in2 complex with gdp
48d2bv3a2
not modelled 99.9 23 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
49d1efca3
not modelled 99.9 27 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
50d1zunb1
not modelled 99.9 60 Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Translation proteins
Family:Elongation factors
51d1jnya1
not modelled 99.9 25 Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Translation proteins
Family:Elongation factors
52d1f60a1
not modelled 99.9 22 Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Translation proteins
Family:Elongation factors
53c2e87A_
not modelled 99.9 21 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ph1320;
PDBTitle: crystal structure of hypothetical gtp-binding protein ph1320 from2 pyrococcus horikoshii ot3, in complex with gdp
54d1kk1a1
not modelled 99.9 18 Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Translation proteins
Family:Elongation factors
55d2c78a1
not modelled 99.8 22 Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Translation proteins
Family:Elongation factors
56d1d2ea1
not modelled 99.8 21 Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Translation proteins
Family:Elongation factors
57c2qthA_
not modelled 99.8 21 PDB header:nucleotide binding protein
Chain: A: PDB Molecule:gtp-binding protein;
PDBTitle: crystal structure of a gtp-binding protein from the2 hyperthermophilic archaeon sulfolobus solfataricus in3 complex with gdp
58d1efca1
not modelled 99.8 22 Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Translation proteins
Family:Elongation factors
59d1s0ua1
not modelled 99.8 17 Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Translation proteins
Family:Elongation factors
60d1r5ba1
not modelled 99.8 18 Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Translation proteins
Family:Elongation factors
61d1kk1a3
not modelled 99.8 24 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
62d1s0ua3
not modelled 99.8 22 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
63d2qn6a3
not modelled 99.8 24 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
64d1wb1a1
not modelled 99.8 26 Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Translation proteins
Family:Elongation factors
65c1xzqA_
not modelled 99.8 26 PDB header:hydrolase
Chain: A: PDB Molecule:probable trna modification gtpase trme;
PDBTitle: structure of the gtp-binding protein trme from thermotoga2 maritima complexed with 5-formyl-thf
66d1efca2
not modelled 99.8 18 Fold:Elongation factor/aminomethyltransferase common domain
Superfamily:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
Family:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
67c3ievA_
not modelled 99.8 22 PDB header:nucleotide binding protein/rna
Chain: A: PDB Molecule:gtp-binding protein era;
PDBTitle: crystal structure of era in complex with mggnp and the 3' end of 16s2 rrna
68d1wb1a4
not modelled 99.8 26 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
69d2qn6a1
not modelled 99.8 24 Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Translation proteins
Family:Elongation factors
70c3qq5A_
not modelled 99.8 24 PDB header:oxidoreductase
Chain: A: PDB Molecule:small gtp-binding protein;
PDBTitle: crystal structure of the [fefe]-hydrogenase maturation protein hydf
71c3gehA_
not modelled 99.8 29 PDB header:hydrolase
Chain: A: PDB Molecule:trna modification gtpase mnme;
PDBTitle: crystal structure of mnme from nostoc in complex with gdp, folinic2 acid and zn
72c1wf3A_
not modelled 99.8 20 PDB header:hydrolase
Chain: A: PDB Molecule:gtp-binding protein;
PDBTitle: crystal structure of gtp-binding protein tt1341 from thermus2 thermophilus hb8
73d2c78a2
not modelled 99.8 17 Fold:Elongation factor/aminomethyltransferase common domain
Superfamily:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
Family:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
74d1d2ea2
not modelled 99.7 20 Fold:Elongation factor/aminomethyltransferase common domain
Superfamily:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
Family:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
75c1egaB_
not modelled 99.7 23 PDB header:hydrolase
Chain: B: PDB Molecule:protein (gtp-binding protein era);
PDBTitle: crystal structure of a widely conserved gtpase era
76d1yrba1
not modelled 99.7 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
77c3md0A_
not modelled 99.7 19 PDB header:transport protein
Chain: A: PDB Molecule:arginine/ornithine transport system atpase;
PDBTitle: crystal structure of arginine/ornithine transport system2 atpase from mycobacterium tuberculosis bound to gdp (a ras-3 like gtpase superfamily protein)
78c2qptA_
not modelled 99.7 21 PDB header:endocytosis
Chain: A: PDB Molecule:eh domain-containing protein-2;
PDBTitle: crystal structure of an ehd atpase involved in membrane remodelling
79c1udxA_
not modelled 99.7 18 PDB header:protein binding
Chain: A: PDB Molecule:the gtp-binding protein obg;
PDBTitle: crystal structure of the conserved protein tt1381 from thermus2 thermophilus hb8
80c3a1vB_
not modelled 99.7 15 PDB header:transport protein
Chain: B: PDB Molecule:iron(ii) transport protein b;
PDBTitle: crystal structue of the cytosolic domain of t. maritima feob2 iron iransporter in apo form
81d1svia_
not modelled 99.7 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
82c1lnzA_
not modelled 99.7 22 PDB header:cell cycle
Chain: A: PDB Molecule:spo0b-associated gtp-binding protein;
PDBTitle: structure of the obg gtp-binding protein
83c2wsmB_
not modelled 99.7 11 PDB header:metal binding protein
Chain: B: PDB Molecule:hydrogenase expression/formation protein (hypb);
PDBTitle: crystal structure of hydrogenase maturation factor hypb from2 archaeoglobus fulgidus
84c2qagC_
not modelled 99.6 15 PDB header:cell cycle, structural protein
Chain: C: PDB Molecule:septin-7;
PDBTitle: crystal structure of human septin trimer 2/6/7
85c3r7wC_
not modelled 99.6 23 PDB header:protein transport
Chain: C: PDB Molecule:gtp-binding protein gtr1;
PDBTitle: crystal structure of gtr1p-gtr2p complex
86d1g7sa4
not modelled 99.6 22 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
87c3k53B_
not modelled 99.6 18 PDB header:metal transport
Chain: B: PDB Molecule:ferrous iron transport protein b;
PDBTitle: crystal structure of nfeob from p. furiosus
88c3i8sC_
not modelled 99.6 23 PDB header:transport protein
Chain: C: PDB Molecule:ferrous iron transport protein b;
PDBTitle: structure of the cytosolic domain of e. coli feob, nucleotide-free2 form
89c3ibyA_
not modelled 99.6 22 PDB header:transport protein
Chain: A: PDB Molecule:ferrous iron transport protein b;
PDBTitle: structure of cytosolic domain of l. pneumophila feob
90c3nxsA_
not modelled 99.6 21 PDB header:transport protein
Chain: A: PDB Molecule:lao/ao transport system atpase;
PDBTitle: crystal structure of lao/ao transport system from mycobacterium2 smegmatis bound to gdp
91c2gedB_
not modelled 99.6 27 PDB header:protein transport, signaling protein
Chain: B: PDB Molecule:signal recognition particle receptor beta
PDBTitle: signal recognition particle receptor beta-subunit in2 nucleotide-free dimerized form
92c3lx8A_
not modelled 99.6 20 PDB header:metal transport
Chain: A: PDB Molecule:ferrous iron uptake transporter protein b;
PDBTitle: crystal structure of gdp-bound nfeob from s. thermophilus
93d1tq4a_
not modelled 99.6 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
94d1puia_
not modelled 99.5 13 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
95c3lvrE_
not modelled 99.5 17 PDB header:protein transport
Chain: E: PDB Molecule:arf-gap with sh3 domain, ank repeat and ph domain-
PDBTitle: the crystal structure of asap3 in complex with arf6 in transition2 state soaked with calcium
96c2j3eA_
not modelled 99.5 15 PDB header:protein transport
Chain: A: PDB Molecule:t7i23.11 protein;
PDBTitle: dimerization is important for the gtpase activity of2 chloroplast translocon components attoc33 and pstoc159
97d2qm8a1
not modelled 99.5 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
98d2p67a1
not modelled 99.5 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
99c2xtpA_
not modelled 99.5 19 PDB header:immune system
Chain: A: PDB Molecule:gtpase imap family member 2;
PDBTitle: crystal structure of nucleotide-free human gimap2, amino2 acid residues 1-260
100c2qa5A_
not modelled 99.5 19 PDB header:cell cycle, structural protein
Chain: A: PDB Molecule:septin-2;
PDBTitle: crystal structure of sept2 g-domain
101d1h65a_
not modelled 99.5 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
102c2hf9A_
not modelled 99.5 19 PDB header:hydrolase, metal binding protein
Chain: A: PDB Molecule:probable hydrogenase nickel incorporation
PDBTitle: crystal structure of hypb from methanocaldococcus2 jannaschii in the triphosphate form
103c3pqcA_
not modelled 99.4 21 PDB header:hydrolase
Chain: A: PDB Molecule:probable gtp-binding protein engb;
PDBTitle: crystal structure of thermotoga maritima ribosome biogenesis gtp-2 binding protein engb (ysxc/yiha) in complex with gdp
104d1mkya2
not modelled 99.4 22 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
105c2j69D_
not modelled 99.4 17 PDB header:hydrolase
Chain: D: PDB Molecule:bacterial dynamin-like protein;
PDBTitle: bacterial dynamin-like protein bdlp
106c2wwwB_
not modelled 99.4 17 PDB header:transport protein
Chain: B: PDB Molecule:methylmalonic aciduria type a protein,
PDBTitle: crystal structure of methylmalonic acidemia type a protein
107c2xtnA_
not modelled 99.4 17 PDB header:immune system
Chain: A: PDB Molecule:gtpase imap family member 2;
PDBTitle: crystal structure of gtp-bound human gimap2, amino acid2 residues 1-234
108d1zcaa2
not modelled 99.4 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
109c3t1tC_
not modelled 99.4 17 PDB header:hydrolase
Chain: C: PDB Molecule:gliding protein mgla;
PDBTitle: mgla bound to gdp in p1 tetrameric arrangement
110c3t5dC_
not modelled 99.4 17 PDB header:signaling protein
Chain: C: PDB Molecule:septin-7;
PDBTitle: crystal structure of septin 7 in complex with gdp
111d1g7sa2
not modelled 99.4 16 Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Translation proteins
Family:Elongation factors
112d1egaa1
not modelled 99.4 21 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
113c3c5hA_
not modelled 99.4 19 PDB header:signaling protein
Chain: A: PDB Molecule:glucocorticoid receptor dna-binding factor 1;
PDBTitle: crystal structure of the ras homolog domain of human grlf12 (p190rhogap)
114d1jwyb_
not modelled 99.4 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
115c3p1jC_
not modelled 99.4 15 PDB header:hydrolase
Chain: C: PDB Molecule:gtpase imap family member 2;
PDBTitle: crystal structure of human gtpase imap family member 2 in the2 nucleotide-free state
116c3lxxA_
not modelled 99.3 17 PDB header:immune system
Chain: A: PDB Molecule:gtpase imap family member 4;
PDBTitle: crystal structure of human gtpase imap family member 4
117d2fh5b1
not modelled 99.3 23 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
118c3o47A_
not modelled 99.3 25 PDB header:hydrolase, hydrolase activator
Chain: A: PDB Molecule:adp-ribosylation factor gtpase-activating protein 1, adp-
PDBTitle: crystal structure of arfgap1-arf1 fusion protein
119c2qu8A_
not modelled 99.3 19 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative nucleolar gtp-binding protein 1;
PDBTitle: crystal structure of putative nucleolar gtp-binding protein 1 pff0625w2 from plasmodium falciparum
120c2dykB_
not modelled 99.3 26 PDB header:ribosome
Chain: B: PDB Molecule:gtp-binding protein;
PDBTitle: crystal structure of n-terminal gtp-binding domain of enga from2 thermus thermophilus hb8

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0