BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (160 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_C3SYI8 Putative uncharacterized protein n=6 Tax=Escheri...   262   3e-69

>UniRef50_C3SYI8 Putative uncharacterized protein n=6 Tax=Escherichia coli
           RepID=C3SYI8_ECOLX
          Length = 449

 Score =  262 bits (669), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 130/160 (81%), Positives = 141/160 (88%)

Query: 1   MLVSKSNGFNASAVLGSGSYNENKSSKHMELLAHSILKLICKEAASETYRGALETLQKMM 60
           ML++KSNGFNASAV GSGSYNENKSSKHMELLAHSI+KLICKEAASETYRGALE LQK+M
Sbjct: 1   MLINKSNGFNASAVWGSGSYNENKSSKHMELLAHSIVKLICKEAASETYRGALEILQKIM 60

Query: 61  SECIYQEGNAFVIMGAGEQLKRIKYEVGENNLKVFNVHFNNNHELVSSGEPDVICLSKQV 120
           SECIYQEGNAFVIMGAGEQLKRIKY+V ENNLKVFNVHF+NN  LV+ GEPDV+CLSKQV
Sbjct: 61  SECIYQEGNAFVIMGAGEQLKRIKYDVDENNLKVFNVHFDNNEVLVTDGEPDVVCLSKQV 120

Query: 121 WENLLIKLKLENNENVFSETKKLSNKNNADQFFECAKRNE 160
           WENLLIKLK E  ENV SE  K +NK   +Q  E +KRNE
Sbjct: 121 WENLLIKLKPEIKENVASEVHKSANKGEIEQLVEWSKRNE 160


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_C3SYI8 Putative uncharacterized protein n=6 Tax=Escheri...   295   3e-79

Sequences not found previously or not previously below threshold:


CONVERGED!
>UniRef50_C3SYI8 Putative uncharacterized protein n=6 Tax=Escherichia coli
           RepID=C3SYI8_ECOLX
          Length = 449

 Score =  295 bits (756), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 130/160 (81%), Positives = 141/160 (88%)

Query: 1   MLVSKSNGFNASAVLGSGSYNENKSSKHMELLAHSILKLICKEAASETYRGALETLQKMM 60
           ML++KSNGFNASAV GSGSYNENKSSKHMELLAHSI+KLICKEAASETYRGALE LQK+M
Sbjct: 1   MLINKSNGFNASAVWGSGSYNENKSSKHMELLAHSIVKLICKEAASETYRGALEILQKIM 60

Query: 61  SECIYQEGNAFVIMGAGEQLKRIKYEVGENNLKVFNVHFNNNHELVSSGEPDVICLSKQV 120
           SECIYQEGNAFVIMGAGEQLKRIKY+V ENNLKVFNVHF+NN  LV+ GEPDV+CLSKQV
Sbjct: 61  SECIYQEGNAFVIMGAGEQLKRIKYDVDENNLKVFNVHFDNNEVLVTDGEPDVVCLSKQV 120

Query: 121 WENLLIKLKLENNENVFSETKKLSNKNNADQFFECAKRNE 160
           WENLLIKLK E  ENV SE  K +NK   +Q  E +KRNE
Sbjct: 121 WENLLIKLKPEIKENVASEVHKSANKGEIEQLVEWSKRNE 160


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.317    0.138    0.392 

Lambda     K      H
   0.267   0.0422    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 649,594,016
Number of Sequences: 3077464
Number of extensions: 26337492
Number of successful extensions: 59733
Number of sequences better than 1.0e-01: 1
Number of HSP's better than  0.1 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 59731
Number of HSP's gapped (non-prelim): 3
length of query: 160
length of database: 1,040,396,356
effective HSP length: 118
effective length of query: 42
effective length of database: 677,255,604
effective search space: 28444735368
effective search space used: 28444735368
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.1 bits)
S2: 87 (38.1 bits)