BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (566 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P27896 Nitrate/nitrite sensor protein narQ n=113 Tax=En... 1162 0.0 UniRef50_A8GHJ7 Integral membrane sensor signal transduction his... 595 e-168 UniRef50_C5S0V3 Nitrate/nitrite sensor protein NarQ n=6 Tax=Gamm... 434 e-120 UniRef50_Q5E3J3 Sensory histidine kinase in two-component regula... 424 e-117 UniRef50_A7JYP2 Histidine kinase domain protein n=7 Tax=Vibrio R... 422 e-116 UniRef50_D0IAW0 Nitrate/nitrite sensor protein n=3 Tax=Gammaprot... 411 e-113 UniRef50_A5EZZ3 Nitrate/nitrite sensor protein NarQ n=51 Tax=Vib... 410 e-113 UniRef50_Q2C653 Hypothetical nitrate/nitrite sensor protein NarQ... 405 e-111 UniRef50_P44604 Sensor protein narQ homolog n=30 Tax=Gammaproteo... 399 e-109 UniRef50_B2CI54 Integral membrane sensor signal transduction his... 380 e-104 UniRef50_A0KIL7 Nitrate/nitrite sensor histidine kinase NarQ n=2... 354 4e-96 UniRef50_B8EB80 Histidine kinase n=20 Tax=Shewanella RepID=B8EB8... 313 1e-83 UniRef50_A6FC55 Hypothetical nitrate/nitrite sensor protein NarQ... 297 7e-79 UniRef50_Q5QWJ9 Nitrate/nitrite sensor histidine kinase n=1 Tax=... 251 7e-65 UniRef50_Q0A9X9 Signal transduction histidine kinase, nitrate/ni... 245 3e-63 UniRef50_Q1ZGB4 Nitrate/nitrite sensor protein n=1 Tax=Psychromo... 238 4e-61 UniRef50_Q2SF45 Signal transduction histidine kinase, nitrate/ni... 236 1e-60 UniRef50_B7UUR7 Two-component sensor NarX n=7 Tax=Gammaproteobac... 234 5e-60 UniRef50_A4BGQ5 Signal transduction histidine kinase, nitrate/ni... 233 2e-59 UniRef50_C7RBW7 Histidine kinase n=1 Tax=Kangiella koreensis DSM... 229 3e-58 UniRef50_D2T798 Sensor for nitrate reductase system, protein his... 228 6e-58 UniRef50_A8FUN8 Two-component sensor NarX n=3 Tax=Shewanella Rep... 226 1e-57 UniRef50_Q9F0Y0 Nitrate/nitrite sensor protein n=1 Tax=Pseudomon... 226 2e-57 UniRef50_B4S080 Signal transduction histidine kinase, nitrate/ni... 226 2e-57 UniRef50_A4VHY8 Two-component sensor NarX n=3 Tax=Pseudomonas Re... 224 1e-56 UniRef50_A4TJU9 Nitrate/nitrite sensor protein n=29 Tax=Enteroba... 218 5e-55 UniRef50_Q5P3L3 Nitrate/nitrite TWO-component sensor NARX n=1 Ta... 218 6e-55 UniRef50_A1U593 Integral membrane sensor signal transduction his... 218 6e-55 UniRef50_Q3SJ17 Periplasmic Sensor Signal Transduction Histidine... 216 2e-54 UniRef50_Q8VUK2 Putative nitrate/nitrite sensor protein n=1 Tax=... 214 9e-54 UniRef50_Q4FU45 Signal transduction histidine kinase sensor n=2 ... 201 6e-50 UniRef50_P0AFA3 Nitrate/nitrite sensor protein narX n=127 Tax=Ga... 201 9e-50 UniRef50_B4EWG1 Nitrate/nitrite teo-component system, sensor kin... 198 4e-49 UniRef50_B4TXT2 Nitrate/nitrite sensor protein NarX n=69 Tax=Ent... 193 2e-47 UniRef50_B2Q6G3 Putative uncharacterized protein n=3 Tax=Enterob... 189 3e-46 UniRef50_C4K985 Histidine kinase n=1 Tax=Thauera sp. MZ1T RepID=... 187 1e-45 UniRef50_C7I506 GAF sensor signal transduction histidine kinase ... 171 6e-41 UniRef50_Q0HUB7 Signal transduction histidine kinase, nitrate/ni... 170 1e-40 UniRef50_UPI00016987BE Periplasmic Sensor Signal Transduction Hi... 169 3e-40 UniRef50_A6D1I3 Signal transduction histidine kinase, nitrate/ni... 167 1e-39 UniRef50_Q5NYZ8 Nitrate/nitrite sensor kinase n=1 Tax=Aromatoleu... 167 1e-39 UniRef50_A2SGG0 Signal transduction histidine kinase, nitrate/ni... 166 2e-39 UniRef50_C4GHV1 Putative uncharacterized protein n=1 Tax=Kingell... 166 2e-39 UniRef50_A1W358 Signal transduction histidine kinase, nitrate/ni... 162 3e-38 UniRef50_B4RLW4 NarX/NarQ n=17 Tax=Neisseria RepID=B4RLW4_NEIG2 158 5e-37 UniRef50_A9LZC9 Two-component system, NarL family, nitrate/nitri... 155 3e-36 UniRef50_C5T4I9 GAF sensor signal transduction histidine kinase ... 155 4e-36 UniRef50_C1D9F9 NarX n=1 Tax=Laribacter hongkongensis HLHK9 RepI... 154 6e-36 UniRef50_C4KA07 GAF sensor signal transduction histidine kinase ... 154 8e-36 UniRef50_B2JVQ4 Integral membrane sensor signal transduction his... 151 8e-35 UniRef50_Q1H473 Signal transduction histidine kinase, nitrate/ni... 151 8e-35 UniRef50_A5WD78 Integral membrane sensor signal transduction his... 148 5e-34 UniRef50_C6XAG1 Histidine kinase n=1 Tax=Methylovorus sp. SIP3-4... 142 5e-32 UniRef50_C6QH09 Histidine kinase n=1 Tax=Hyphomicrobium denitrif... 136 2e-30 UniRef50_B9Z081 Multi-sensor signal transduction histidine kinas... 135 3e-30 UniRef50_C0N1R0 Histidine kinase domain protein n=1 Tax=Methylop... 135 3e-30 UniRef50_Q7N5B4 Similar to nitrate/nitrite sensor protein NarX n... 129 3e-28 UniRef50_C0DXM5 Sensor protein n=1 Tax=Eikenella corrodens ATCC ... 128 7e-28 UniRef50_B8GUD0 GAF sensor signal transduction histidine kinase ... 127 9e-28 UniRef50_Q5MJZ2 Nitrate/nitrite sensor protein n=1 Tax=Methyloph... 123 2e-26 UniRef50_C6P056 GAF sensor signal transduction histidine kinase ... 122 3e-26 UniRef50_Q47HU2 GAF:ATP-binding region, ATPase-like:Histidine ki... 118 6e-25 UniRef50_Q3SG40 GAF Sensor Signal Transduction Histidine Kinase ... 117 2e-24 UniRef50_C5SBA0 Histidine kinase n=1 Tax=Allochromatium vinosum ... 114 1e-23 UniRef50_Q46R21 GAF:ATP-binding region, ATPase-like:Histidine ki... 112 3e-23 UniRef50_D1C6A0 GAF sensor signal transduction histidine kinase ... 112 3e-23 UniRef50_Q7NV12 Transmembrane nitrate/nitrite sensor kinase tran... 108 6e-22 UniRef50_B9L060 Putative two component system histidine kinase n... 105 3e-21 UniRef50_C3K8H6 Putative two-component system, sensor kinase n=1... 105 6e-21 UniRef50_A4AGB5 Putative two component system sensor kinase n=1 ... 102 3e-20 UniRef50_D1C6S2 Histidine kinase n=1 Tax=Sphaerobacter thermophi... 102 3e-20 UniRef50_C0DXB9 Putative uncharacterized protein n=1 Tax=Eikenel... 101 7e-20 UniRef50_Q025Z0 Histidine kinase n=1 Tax=Candidatus Solibacter u... 99 5e-19 UniRef50_Q5SJ33 Sensor histidine kinase n=3 Tax=Thermus RepID=Q5... 98 7e-19 UniRef50_A4G5M3 Putative Nitrate/nitrite sensor protein narX n=1... 98 7e-19 UniRef50_B4D830 Integral membrane sensor signal transduction his... 97 2e-18 UniRef50_D1C657 GAF sensor signal transduction histidine kinase ... 96 3e-18 UniRef50_C1ACX8 Two-component histidine kinase n=1 Tax=Gemmatimo... 96 5e-18 UniRef50_A1WYG6 Histidine kinase n=1 Tax=Halorhodospira halophil... 95 7e-18 UniRef50_B6JD37 Signal transduction histidine kinase containing ... 94 1e-17 UniRef50_B8CZJ7 Integral membrane sensor signal transduction his... 94 1e-17 UniRef50_Q67L27 Two-component sensor histidine kinase n=1 Tax=Sy... 93 3e-17 UniRef50_C1F9F5 Two component regulator propeller/histidine kina... 93 3e-17 UniRef50_C6J152 Histidine kinase dimerization and phosphoaccepto... 93 4e-17 UniRef50_C0ZDW3 Probable two-component sensor histidine kinase n... 92 5e-17 UniRef50_A4AC75 Two-component system sensor kinase n=1 Tax=Congr... 92 7e-17 UniRef50_C9RWH5 Integral membrane sensor signal transduction his... 91 1e-16 UniRef50_Q74GJ3 Sensory box histidine kinase n=1 Tax=Geobacter s... 91 1e-16 UniRef50_Q1D524 Sensor histidine kinase n=2 Tax=Cystobacterineae... 91 1e-16 UniRef50_B4CYV7 Histidine kinase n=1 Tax=Chthoniobacter flavus E... 91 1e-16 UniRef50_A9B1S5 Multi-sensor signal transduction histidine kinas... 91 1e-16 UniRef50_UPI0001B561AB two-component system sensor kinase n=1 Ta... 91 1e-16 UniRef50_Q47FQ9 Response regulator receiver:ATP-binding region, ... 90 3e-16 UniRef50_Q3M1D8 Serine/threonine protein kinase and signal trans... 90 3e-16 UniRef50_Q1H0K4 Multi-sensor signal transduction histidine kinas... 90 3e-16 UniRef50_D1CF52 Two component transcriptional regulator, LuxR fa... 89 3e-16 UniRef50_C1XM57 Signal transduction histidine kinase, COG4585 n=... 89 3e-16 UniRef50_UPI00017449FC GAF domain protein n=1 Tax=Verrucomicrobi... 89 4e-16 UniRef50_B4D2I1 Histidine kinase n=1 Tax=Chthoniobacter flavus E... 89 4e-16 UniRef50_C4DRB4 Signal transduction histidine kinase, COG4585 n=... 89 4e-16 UniRef50_D2R949 MCP methyltransferase/methylesterase, CheR/CheB ... 89 5e-16 UniRef50_B5JLS1 Histidine kinase domain protein n=1 Tax=Verrucom... 89 6e-16 UniRef50_B4WTJ3 Histidine kinase domain protein n=1 Tax=Synechoc... 89 6e-16 UniRef50_C6J7D3 ATP-binding region ATPase domain-containing prot... 88 7e-16 UniRef50_C6CWJ2 Histidine kinase n=1 Tax=Paenibacillus sp. JDR-2... 88 1e-15 UniRef50_B8HT67 GAF sensor signal transduction histidine kinase ... 88 1e-15 UniRef50_C4XHQ2 Two-component sensor histidine kinase n=1 Tax=De... 88 1e-15 UniRef50_A1ATT5 PAS/PAC sensor signal transduction histidine kin... 87 1e-15 UniRef50_UPI0001746AED sensor protein fixL n=1 Tax=Verrucomicrob... 87 1e-15 UniRef50_Q5WCK2 Two-component sensor histidine kinase n=1 Tax=Ba... 87 1e-15 UniRef50_D2AQR2 Histidine kinase n=1 Tax=Streptosporangium roseu... 87 2e-15 UniRef50_B9TQ72 Putative uncharacterized protein (Fragment) n=1 ... 87 2e-15 UniRef50_Q0G657 Two-component sensor histidine kinase n=2 Tax=Au... 87 2e-15 UniRef50_B4DBN0 Integral membrane sensor signal transduction his... 87 2e-15 UniRef50_C4RLN3 Histidine kinase n=1 Tax=Micromonospora sp. ATCC... 87 2e-15 UniRef50_B9XQH3 PAS/PAC sensor signal transduction histidine kin... 86 3e-15 UniRef50_Q2B2D2 Two-component sensor histidine kinase n=2 Tax=Ba... 86 3e-15 UniRef50_UPI000169369A sensor histidine kinase n=1 Tax=Paenibaci... 86 3e-15 UniRef50_Q8YV44 Two-component sensor histidine kinase n=3 Tax=Cy... 86 4e-15 UniRef50_C0N925 HAMP domain protein n=1 Tax=Methylophaga thiooxi... 86 4e-15 UniRef50_A4X9X2 ATP-binding region, ATPase domain protein domain... 86 4e-15 UniRef50_B3E9K4 Response regulator receiver sensor signal transd... 86 4e-15 UniRef50_C3PKA7 Two-component system sensor kinase n=2 Tax=Coryn... 86 5e-15 UniRef50_B4SLY9 Histidine kinase n=3 Tax=Stenotrophomonas RepID=... 86 5e-15 UniRef50_C4DC51 Histidine kinase with GAF domain n=2 Tax=Actinom... 86 5e-15 UniRef50_Q7WNB8 Two-component system sensor kinase n=2 Tax=Borde... 86 5e-15 UniRef50_C6CGT0 PAS/PAC sensor signal transduction histidine kin... 85 6e-15 UniRef50_A5W510 Integral membrane sensor signal transduction his... 85 6e-15 UniRef50_A1AXR2 Signal transduction histidine kinase, nitrate/ni... 85 7e-15 UniRef50_UPI0001692C7B sensor histidine kinase n=1 Tax=Paenibaci... 85 7e-15 UniRef50_A8LRP9 Integral membrane sensor signal transduction his... 85 7e-15 UniRef50_A9WFF8 Histidine kinase dimerisation and phosphoaccepto... 85 8e-15 UniRef50_B4DAE0 Integral membrane sensor signal transduction his... 85 8e-15 UniRef50_Q0A821 Signal transduction histidine kinase, nitrate/ni... 85 9e-15 UniRef50_C2C0V0 Possible histidine kinase n=5 Tax=Listeria RepID... 85 9e-15 UniRef50_C0Z627 Two-component sensor histidine kinase n=3 Tax=Ba... 85 1e-14 UniRef50_B9XSJ3 Multi-sensor signal transduction histidine kinas... 84 1e-14 UniRef50_B4WPC3 GAF domain protein n=1 Tax=Synechococcus sp. PCC... 84 1e-14 UniRef50_C7MRK1 PAS domain S-box n=1 Tax=Saccharomonospora virid... 84 1e-14 UniRef50_UPI00017893B7 integral membrane sensor signal transduct... 84 1e-14 UniRef50_A0LTI7 Putative signal transduction histidine kinase n=... 84 1e-14 UniRef50_A1ASJ6 Multi-sensor signal transduction histidine kinas... 84 1e-14 UniRef50_UPI00017468E2 histidine kinase n=1 Tax=Verrucomicrobium... 84 2e-14 UniRef50_D1VQR6 GAF sensor signal transduction histidine kinase ... 84 2e-14 UniRef50_Q47KE3 GAF:ATP-binding region, ATPase-like n=24 Tax=Act... 84 2e-14 UniRef50_B1YJQ1 Integral membrane sensor signal transduction his... 84 2e-14 UniRef50_Q2Y9N2 Periplasmic sensor signal transduction histidine... 84 2e-14 UniRef50_B3U4S0 Response regulator receiver n=1 Tax=Candidatus N... 83 2e-14 UniRef50_D2L4L4 Histidine kinase n=1 Tax=Desulfovibrio sp. FW101... 83 3e-14 UniRef50_C6CT57 Histidine kinase n=1 Tax=Paenibacillus sp. JDR-2... 83 3e-14 UniRef50_C8NE28 Sensor histidine kinase n=1 Tax=Granulicatella a... 83 3e-14 UniRef50_A6GSY8 Sensory transduction histidine kinase n=1 Tax=Li... 83 3e-14 UniRef50_D0BKY9 Sensor histidine kinase VraS n=1 Tax=Granulicate... 83 3e-14 UniRef50_D1C9Z9 GAF sensor signal transduction histidine kinase ... 82 4e-14 UniRef50_UPI0001B54FA0 histidine kinase n=1 Tax=Streptomyces sp.... 82 5e-14 UniRef50_Q4K8Y6 Sensor histidine kinase, putative n=8 Tax=Pseudo... 82 5e-14 UniRef50_C1RNK2 Signal transduction histidine kinase, COG4585 n=... 82 5e-14 UniRef50_A1S6S1 Sensor histidine kinase n=1 Tax=Shewanella amazo... 82 6e-14 UniRef50_B8HNY8 Histidine kinase n=1 Tax=Cyanothece sp. PCC 7425... 82 7e-14 UniRef50_B5YIR1 Sensory box histidine kinase, putative n=1 Tax=T... 82 7e-14 UniRef50_B1HW31 Nitrate/nitrite sensor protein n=2 Tax=Bacillace... 82 7e-14 UniRef50_B5JKT1 Histidine kinase domain protein n=1 Tax=Verrucom... 82 7e-14 UniRef50_C7RBI0 Histidine kinase n=1 Tax=Kangiella koreensis DSM... 82 8e-14 UniRef50_Q3SJC2 Multi-sensor Signal Transduction Histidine Kinas... 81 8e-14 UniRef50_Q65CU9 YvfT n=1 Tax=Bacillus licheniformis ATCC 14580 R... 81 8e-14 UniRef50_C4DDE2 Signal transduction histidine kinase, COG4585 n=... 81 8e-14 UniRef50_B2A7N6 Integral membrane sensor signal transduction his... 81 9e-14 UniRef50_B9DT59 Sensor histidine kinase n=6 Tax=Streptococcus Re... 81 9e-14 UniRef50_A0NNP2 Signal transduction histidine kinase n=2 Tax=Lab... 81 1e-13 UniRef50_C1F5E9 Two-component system sensor protein, putative n=... 81 1e-13 UniRef50_A1HRV6 Integral membrane sensor signal transduction his... 81 1e-13 UniRef50_D0XXF2 Histidine kinase n=1 Tax=Caulobacter segnis ATCC... 81 1e-13 UniRef50_C0GJ71 Integral membrane sensor signal transduction his... 81 1e-13 UniRef50_A9AX02 Integral membrane sensor signal transduction his... 81 1e-13 UniRef50_Q8ERY5 Two-component sensor histidine kinase n=1 Tax=Oc... 81 1e-13 UniRef50_A3DEX1 Histidine kinase n=5 Tax=Clostridium RepID=A3DEX... 81 1e-13 UniRef50_Q1J3L3 Periplasmic sensor signal transduction histidine... 81 1e-13 UniRef50_C6IW91 Histidine kinase dimerization and phosphoaccepto... 81 1e-13 UniRef50_A1WDW7 Multi-sensor signal transduction histidine kinas... 80 1e-13 UniRef50_B4STB9 Integral membrane sensor signal transduction his... 80 2e-13 UniRef50_C8WYI2 Histidine kinase n=2 Tax=Alicyclobacillus acidoc... 80 2e-13 UniRef50_C1CWD4 Putative histidine kinase, classic; putative mem... 80 2e-13 UniRef50_C1B0L5 Two-component histidine kinase n=5 Tax=Rhodococc... 80 2e-13 UniRef50_A5UUR7 Multi-sensor signal transduction histidine kinas... 80 2e-13 UniRef50_A0L9F0 Multi-sensor signal transduction histidine kinas... 80 2e-13 UniRef50_O32198 Sensor histidine kinase liaS n=5 Tax=Bacillus Re... 80 2e-13 UniRef50_Q1IXN3 Periplasmic sensor signal transduction histidine... 80 2e-13 UniRef50_UPI0001B54039 histidine kinase n=1 Tax=Streptomyces sp.... 80 2e-13 UniRef50_Q21XA3 Histidine kinase n=1 Tax=Rhodoferax ferrireducen... 80 2e-13 UniRef50_Q1AZP1 Periplasmic sensor signal transduction histidine... 80 2e-13 UniRef50_B7KQU6 Histidine kinase n=5 Tax=Methylobacterium RepID=... 80 2e-13 UniRef50_C1F446 Histidine kinase domain protein n=1 Tax=Acidobac... 80 2e-13 UniRef50_UPI000178A79F integral membrane sensor signal transduct... 80 2e-13 UniRef50_Q747N5 Sensory box histidine kinase n=2 Tax=Geobacter R... 80 3e-13 UniRef50_B1Y742 Response regulator receiver sensor signal transd... 80 3e-13 UniRef50_A7NRQ7 Integral membrane sensor signal transduction his... 80 3e-13 UniRef50_Q38VV9 Two-component system, sensor histidine kinase n=... 80 3e-13 UniRef50_Q21Y83 Putative PAS/PAC sensor protein n=1 Tax=Rhodofer... 79 3e-13 UniRef50_B2UDW5 Multi-sensor signal transduction histidine kinas... 79 3e-13 UniRef50_UPI0001C31D26 integral membrane sensor signal transduct... 79 3e-13 UniRef50_C8NJ20 Histidine kinase-related ATPase n=1 Tax=Granulic... 79 3e-13 UniRef50_Q2IIQ9 Periplasmic sensor signal transduction histidine... 79 3e-13 UniRef50_C6XAP9 PAS/PAC sensor signal transduction histidine kin... 79 4e-13 UniRef50_Q1IJ87 Histidine kinase n=1 Tax=Candidatus Koribacter v... 79 4e-13 UniRef50_B1ZR83 Integral membrane sensor signal transduction his... 79 4e-13 UniRef50_UPI000050FB07 two-component histidine kinase n=1 Tax=Br... 79 4e-13 UniRef50_D2B559 Histidine kinase n=1 Tax=Streptosporangium roseu... 79 4e-13 UniRef50_B4WTU0 PAS fold family n=1 Tax=Synechococcus sp. PCC 73... 79 4e-13 UniRef50_B8D0J3 Histidine kinase n=2 Tax=Clostridia RepID=B8D0J3... 79 4e-13 UniRef50_A5GBV0 Integral membrane sensor signal transduction his... 79 5e-13 UniRef50_C6CVS1 Histidine kinase n=1 Tax=Paenibacillus sp. JDR-2... 79 5e-13 UniRef50_C0ZEI3 Two-component sensor histidine kinase n=2 Tax=Br... 79 5e-13 UniRef50_C4RH58 Two-component system sensor kinase n=1 Tax=Micro... 79 6e-13 UniRef50_A9BNQ5 Histidine kinase n=1 Tax=Delftia acidovorans SPH... 79 6e-13 UniRef50_A9B363 Integral membrane sensor signal transduction his... 79 6e-13 UniRef50_C4ZFM0 Histidine kinase n=1 Tax=Eubacterium rectale ATC... 79 7e-13 UniRef50_Q2IVJ5 Putative signal transduction histidine kinase n=... 79 7e-13 UniRef50_C1XFL0 Signal transduction histidine kinase, COG4585 n=... 78 7e-13 UniRef50_B4RWI3 Sensor histidine kinase n=2 Tax=Alteromonas macl... 78 8e-13 UniRef50_A6TSW3 Histidine kinase n=2 Tax=Alkaliphilus RepID=A6TS... 78 9e-13 UniRef50_B1HRK4 Sensor protein n=2 Tax=Bacillaceae RepID=B1HRK4_... 78 1e-12 UniRef50_D2PW73 Histidine kinase n=1 Tax=Kribbella flavida DSM 1... 78 1e-12 UniRef50_Q47G83 PAS n=1 Tax=Dechloromonas aromatica RCB RepID=Q4... 78 1e-12 UniRef50_C1YIX9 Signal transduction histidine kinase, COG4585 n=... 78 1e-12 UniRef50_B9XAQ4 Multi-sensor signal transduction histidine kinas... 78 1e-12 UniRef50_C7TK00 Two component sensor transduction histidine kina... 78 1e-12 UniRef50_P96685 Sensor histidine kinase ydfH n=4 Tax=Bacillus su... 77 1e-12 UniRef50_B2AKD3 Putative multi-sensor signal transduction histid... 77 1e-12 UniRef50_Q9LCW6 Sensor kinase n=5 Tax=Pseudomonas aeruginosa Rep... 77 1e-12 UniRef50_Q024A3 Histidine kinase n=1 Tax=Candidatus Solibacter u... 77 1e-12 UniRef50_A2SKA8 Methanol utilization control sensor protein MoxY... 77 1e-12 UniRef50_Q3IGR8 Sensory histidine kinase in two-component regula... 77 1e-12 UniRef50_B4CY61 Integral membrane sensor signal transduction his... 77 1e-12 UniRef50_C5D3Y6 Histidine kinase n=1 Tax=Geobacillus sp. WCH70 R... 77 1e-12 UniRef50_A9WAP8 ATP-binding region ATPase domain protein n=3 Tax... 77 2e-12 UniRef50_D1CFK9 Histidine kinase n=1 Tax=Thermobaculum terrenum ... 77 2e-12 UniRef50_A7NHA6 Integral membrane sensor signal transduction his... 77 2e-12 UniRef50_UPI0001746019 hypothetical protein VspiD_01665 n=1 Tax=... 77 2e-12 UniRef50_A6CIM0 Multi-sensor signal transduction histidine kinas... 77 2e-12 UniRef50_Q74DM4 Sensory box histidine kinase n=1 Tax=Geobacter s... 77 2e-12 UniRef50_C1A0J3 Two-component histidine kinase DevS n=1 Tax=Rhod... 77 2e-12 UniRef50_A1WDG5 Integral membrane sensor signal transduction his... 77 2e-12 UniRef50_D1BWR4 Histidine kinase n=1 Tax=Xylanimonas cellulosily... 77 2e-12 UniRef50_C8X6Y6 Histidine kinase n=3 Tax=Actinobacteria (class) ... 77 2e-12 UniRef50_A6SWF1 Sensory box histidine kinase n=1 Tax=Janthinobac... 77 2e-12 UniRef50_B5WB73 Histidine kinase n=1 Tax=Burkholderia sp. H160 R... 77 2e-12 UniRef50_B4CWL9 Integral membrane sensor signal transduction his... 77 2e-12 UniRef50_D1SFU8 Histidine kinase n=1 Tax=Micromonospora aurantia... 77 2e-12 UniRef50_C0ZBE0 Two-component sensor histidine kinase n=1 Tax=Br... 77 2e-12 UniRef50_B0TH54 Sensor histidine kinase, putative n=1 Tax=Heliob... 77 2e-12 >UniRef50_P27896 Nitrate/nitrite sensor protein narQ n=113 Tax=Enterobacteriaceae RepID=NARQ_ECOLI Length = 566 Score = 1162 bits (3005), Expect = 0.0, Method: Compositional matrix adjust. Identities = 566/566 (100%), Positives = 566/566 (100%) Query: 1 MIVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDL 60 MIVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDL Sbjct: 1 MIVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDL 60 Query: 61 QSGSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPW 120 QSGSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPW Sbjct: 61 QSGSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPW 120 Query: 121 YQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPL 180 YQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPL Sbjct: 121 YQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPL 180 Query: 181 NQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDL 240 NQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDL Sbjct: 181 NQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDL 240 Query: 241 HEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNP 300 HEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNP Sbjct: 241 HEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNP 300 Query: 301 ELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLME 360 ELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLME Sbjct: 301 ELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLME 360 Query: 361 ERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELL 420 ERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELL Sbjct: 361 ERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELL 420 Query: 421 TTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLN 480 TTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLN Sbjct: 421 TTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLN 480 Query: 481 AMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLT 540 AMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLT Sbjct: 481 AMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLT 540 Query: 541 FSQPSGGGTLVSISFRSAEGEESQLM 566 FSQPSGGGTLVSISFRSAEGEESQLM Sbjct: 541 FSQPSGGGTLVSISFRSAEGEESQLM 566 >UniRef50_A8GHJ7 Integral membrane sensor signal transduction histidine kinase n=3 Tax=Enterobacteriaceae RepID=A8GHJ7_SERP5 Length = 560 Score = 595 bits (1534), Expect = e-168, Method: Compositional matrix adjust. Identities = 304/558 (54%), Positives = 388/558 (69%), Gaps = 3/558 (0%) Query: 1 MIVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDL 60 M+VKR V++SLA+A F IV+LS+LSTG+AL T+A SLRDAEA+NIAGSLRMQSYRL YDL Sbjct: 1 MLVKRSVTSSLAKALFCIVILSVLSTGLALTTVADSLRDAEAVNIAGSLRMQSYRLAYDL 60 Query: 61 QSGSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPW 120 +P+L H ++Q+L +P L L+ +YVP V+ +Y L W + ++ G Sbjct: 61 TGPAPELEQHLLQYRQSLQAPALQKLDRFYVPAEVREKYLSLQHAWQPLAQQIQAGQSAD 120 Query: 121 YQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPL 180 YQANI YVNQID FVLALQ Y+E K+ +V AIS+ G I I LV F +R +R QVVAPL Sbjct: 121 YQANIAGYVNQIDHFVLALQRYSELKLTIVAAISVLGFIAIIGLVLFCIRFMRRQVVAPL 180 Query: 181 NQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDL 240 LV ASQR++ F+ PPLDT LPNELG+L++ F MS +L KLY SLE V+EKT+ L Sbjct: 181 KHLVDASQRVQQRDFNHPPLDTALPNELGVLSQAFTAMSGDLAKLYESLEQKVQEKTQRL 240 Query: 241 HEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGEN---WRISEGQ 297 +A + LEVLY CSQALN QID F IL IVR +E + LNV ++ W++ G+ Sbjct: 241 QQANKTLEVLYNCSQALNVRQIDQQAFEKILHIVRQSEDLHCIRLNVADSLSEWQLRSGR 300 Query: 298 PNPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLL 357 P+P L Q L + + GEL WQ+ L+ SV++ML RG+YFN+AQK Q L Sbjct: 301 PSPTLAWQSLTIIQGDKPLGELSWQHKEQPPHPHLMQSVANMLSRGVYFNRAQKQHMQFL 360 Query: 358 LMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLR 417 LMEERATIARELHDSLAQ LS+LRIQLTLL+R++ + AQ I++DF QAL DAYRQLR Sbjct: 361 LMEERATIARELHDSLAQALSFLRIQLTLLRRTLADSTPEAQEIISDFDQALADAYRQLR 420 Query: 418 ELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREA 477 ELLTTFRL +Q+ADL +AL ++L L+ T A++ L CRL + AL+AQ QVH LQI+REA Sbjct: 421 ELLTTFRLNIQEADLNTALHQLLAPLKVLTDARIQLHCRLSSQALNAQQQVHALQIVREA 480 Query: 478 VLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGG 537 VLNA+KHA A EI + C +G++++ I D+G GI EPEGHYGL IM ERA RLGG Sbjct: 481 VLNAIKHAQAQEIVIRCEMTAEGDNSISIADDGCGIASLNEPEGHYGLTIMSERAARLGG 540 Query: 538 TLTFSQPSGGGTLVSISF 555 TL + GT V ++F Sbjct: 541 TLRIQRGEPDGTEVRLTF 558 >UniRef50_C5S0V3 Nitrate/nitrite sensor protein NarQ n=6 Tax=Gammaproteobacteria RepID=C5S0V3_9PAST Length = 572 Score = 434 bits (1117), Expect = e-120, Method: Compositional matrix adjust. Identities = 242/555 (43%), Positives = 336/555 (60%), Gaps = 5/555 (0%) Query: 4 KRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQSG 63 K ++ + FF I+ + L +GI+L + S+ DA IN++GSLR QSYR Y++ Sbjct: 9 KNSIARRIGLYFFIIIGFATLISGISLGIMWSNKSDASLINVSGSLRYQSYRFWYEMNHA 68 Query: 64 SPQLNAHRQLFQQALHSPVLTNLNVWYV-PEAVKTRYAHLNANWLEMNNRLSKGDLPWYQ 122 + + ++ +LHSP L LN Y+ P+ VK RY L W EM + D Y Sbjct: 69 PENIELRLEEYRASLHSPELQALNSSYLLPKEVKARYQRLKDVWEEMALYIRHQDHESYL 128 Query: 123 ANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQ 182 + I +YV +ID FV ALQ +AE K+ + +++ + I L ++ + R +++ L+Q Sbjct: 129 SRIEHYVKEIDAFVSALQKFAEFKLKIAISVIAISMLLIIALAYYGIWYTRKRIIKHLDQ 188 Query: 183 LVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHE 242 LV ASQ+I+ FD L N PNELG+L+KTF QM SEL KLY SLE V +KTR L Sbjct: 189 LVLASQQIQQEDFDHVSLAINEPNELGVLSKTFTQMVSELKKLYTSLEDKVADKTRRLTA 248 Query: 243 AKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNV--GENWRISEGQPNP 300 R + VLY CSQ L + + +L+ V NE + + L V + W I+ Sbjct: 249 VNRSMMVLYHCSQILTSKPVSRTLLLQVLERVLANEQLKGIALEVYGADYWNITIDTDLL 308 Query: 301 ELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLME 360 Q + ++ L W++S + E LL SV+ M+GR +Y Q K QQL+LME Sbjct: 309 SEQWQQYEIAIENEKIAMLRWKSSLLCPDERLLQSVAEMIGRSIYVVQNHKQQQQLILME 368 Query: 361 ERATIARELHDSLAQVLSYLRIQLTLLKRS--IPEDNATAQSIMADFSQALNDAYRQLRE 418 ER+ IARELHDSLAQ L++ +IQ+ LL+R+ I +D ++I+ D +ALNDAY QLRE Sbjct: 369 ERSIIARELHDSLAQSLTFFKIQIRLLQRNGEIEQDWEKQKAILNDLEKALNDAYSQLRE 428 Query: 419 LLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAV 478 LL+TFRLT+++A+L SAL MLDTL+ +TSA+++L C+LP+L AQ QVH+LQI+REAV Sbjct: 429 LLSTFRLTIEEANLTSALERMLDTLRARTSAQISLTCKLPSLMFSAQEQVHVLQIVREAV 488 Query: 479 LNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGT 538 +NA+KHA+ASEI V T DG H + IRDNG GI EPEGHYGL IM+ERA L G Sbjct: 489 INAIKHADASEIEVIAETNADGEHCLMIRDNGKGIETDIEPEGHYGLTIMKERATELHGE 548 Query: 539 LTFSQPSGGGTLVSI 553 S GG LV + Sbjct: 549 FKIQNRSEGGALVMV 563 >UniRef50_Q5E3J3 Sensory histidine kinase in two-component regulatory system with NarP (NarL) n=3 Tax=Aliivibrio RepID=Q5E3J3_VIBF1 Length = 563 Score = 424 bits (1089), Expect = e-117, Method: Compositional matrix adjust. Identities = 229/557 (41%), Positives = 346/557 (62%), Gaps = 14/557 (2%) Query: 7 VSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQSGSPQ 66 ++ ++A+ IV++SI++T +AL+TL+SSL+DAEA+NIAGSLRMQSYRL YD+++ SP+ Sbjct: 9 LTRTIAQVMLLIVMISIITTSLALITLSSSLKDAEAVNIAGSLRMQSYRLAYDIETNSPE 68 Query: 67 LNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPWYQANIN 126 L H F Q++ SP +L+ W+VP+ ++ Y + WL + L + Y ++ Sbjct: 69 LIEHLDKFSQSIESPSFKSLDQWFVPDDIEDYYEDIRLQWLSLQPSLLSDNKQIYLNKVS 128 Query: 127 NYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVF---FTLRRIRHQVVAPLNQL 183 +V++ID FV LQ ++ERK+ L +SL G +G+ +VF F + + ++V+PL+ L Sbjct: 129 LFVDEIDHFVFRLQEFSERKLQL---LSLIGALGLSLIVFSSIFIIFFTQRKIVSPLHHL 185 Query: 184 VTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEA 243 V AS + G + S +D N NELG L FN M+ ++ YR LE+ VE+KT+ L +A Sbjct: 186 VAASHAMTKGNY-SVQVDLNSDNELGQLGNAFNHMTRQVDLSYRELESRVEDKTKKLSQA 244 Query: 244 KRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNE----AAEYLELNVGENWRISEGQPN 299 R L +LYQCSQ L+ SQ+D F++IL + E A +E G +W I+ G+P+ Sbjct: 245 NRSLMILYQCSQQLSASQLDEQAFKNILDTFTNIEGIISARLIVEEESGGDWEITSGEPD 304 Query: 300 PELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLM 359 E P + + + G L WQ S + L+ ++S++L RG+++NQAQK QL+L+ Sbjct: 305 -ESPWSLQELCIDGEQLGYLLWQESLPCPDQKLIINISNILARGIFYNQAQKQTHQLILL 363 Query: 360 EERATIARELHDSLAQVLSYLRIQLTLLKRSIPE-DNATAQSIMADFSQALNDAYRQLRE 418 EER+TIARELHDSLAQ LSYL+IQ TLLKR + + D + + + + L AY QLR Sbjct: 364 EERSTIARELHDSLAQSLSYLKIQTTLLKRQLEKCDCINTSTTLVELDEGLKSAYSQLRG 423 Query: 419 LLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAV 478 LL TFRLT+ +A AL+E++ TL +QT + L+ LP+L ++AQ VHLLQ+IREA Sbjct: 424 LLNTFRLTINKAHFGEALQEIMTTLASQTKINIHLNNELPSLPINAQQHVHLLQLIREAT 483 Query: 479 LNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGT 538 LNA+KH+ A I ++C + + I D+G+G +E HYGL IM+ERA + G Sbjct: 484 LNAIKHSKADNIIITCFQEGEQG-CINIEDDGVGFDPTEEKINHYGLRIMQERANCVHGK 542 Query: 539 LTFSQPSGGGTLVSISF 555 L+ + G V++ F Sbjct: 543 LSITSEIDNGCTVNVMF 559 >UniRef50_A7JYP2 Histidine kinase domain protein n=7 Tax=Vibrio RepID=A7JYP2_VIBSE Length = 584 Score = 422 bits (1084), Expect = e-116, Method: Compositional matrix adjust. Identities = 244/570 (42%), Positives = 357/570 (62%), Gaps = 16/570 (2%) Query: 3 VKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQS 62 VK+ V+ ++A A I+LLS+ +TG A+ TLASSL DAEA+N+AGS+RMQSYRL D+Q Sbjct: 11 VKKSVTRTIASAMLLILLLSVATTGFAIFTLASSLNDAEAVNVAGSMRMQSYRLANDIQV 70 Query: 63 GSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPW-Y 121 S ++H F+ +++SP + L W VPE + Y L W E+ + L +GD P Y Sbjct: 71 KSVDYSSHIDAFEHSIYSPSMKALQHWSVPEDITHDYYRLIMRWHELKSVL-RGDNPAEY 129 Query: 122 QANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLN 181 Q + +V QID FV LQ ++E+K++ + I G GI + F + +R +VV PL Sbjct: 130 QLLVAGFVKQIDEFVFKLQSFSEQKLINLAWIGGLGLGGILCVSMFVVHFVRLEVVRPLR 189 Query: 182 QLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLH 241 LV AS++I++ F+ LD + NE+G+L +TFN+M+++L KLYR LE +V+EKTR L Sbjct: 190 ALVFASEQIKNRSFN-ISLDVSSDNEMGILTRTFNRMATDLGKLYRGLEQAVDEKTRKLQ 248 Query: 242 EAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNV---GE-NWRISEGQ 297 A + LEVLY S+ L S+I+ F+ ILQ + E + ++L + GE +W + EG+ Sbjct: 249 HANQSLEVLYDSSKELTASRINQDNFQAILQHIASLEGIKAVKLEIEQLGEPSWILMEGE 308 Query: 298 P---NPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQ 354 + + +T+ G L+W+ +E L+++ +L R +Y+N+AQ+ + Sbjct: 309 ECCHDCDEDCHSKALTLDGEHLGYLYWKAGLPCPNEALIDNFVQILSRAVYYNRAQRQAE 368 Query: 355 QLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSI---PEDNATAQS--IMADFSQAL 409 Q+LLMEERATIARELHDSLAQ LSYL+IQ+ LLKRS+ P++ A AQ+ ++A+ L Sbjct: 369 QILLMEERATIARELHDSLAQALSYLKIQVALLKRSVKNLPDEKAIAQANQVIAELDTGL 428 Query: 410 NDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVH 469 + AY QLRELLTTFRLT+++ AL++M++TL QT A +TL RL + LDA QVH Sbjct: 429 SAAYTQLRELLTTFRLTIKEGSFGQALQDMVETLNEQTVADITLKNRLSSTELDAHQQVH 488 Query: 470 LLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMR 529 LLQ+IREA +NA+KHA A I + C+ DG TV + D+GIG E HYG++IM+ Sbjct: 489 LLQLIREAAINAIKHAQADNIHIQCLD-NDGKVTVTVTDDGIGFEHQDEKLNHYGMSIMQ 547 Query: 530 ERAERLGGTLTFSQPSGGGTLVSISFRSAE 559 ERA RL L G V + F+ ++ Sbjct: 548 ERAARLHADLHIEASINKGCTVKLEFQHSK 577 >UniRef50_D0IAW0 Nitrate/nitrite sensor protein n=3 Tax=Gammaproteobacteria RepID=D0IAW0_VIBHO Length = 594 Score = 411 bits (1057), Expect = e-113, Method: Compositional matrix adjust. Identities = 239/563 (42%), Positives = 342/563 (60%), Gaps = 14/563 (2%) Query: 1 MIVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDL 60 +IVK+ V+ +AR+ I+ L+++ TG A+ TLASSL DA AIN +GSLRMQSYR+ YD+ Sbjct: 35 IIVKQSVTTIVARSLIGILFLAVIITGFAIFTLASSLNDAAAINTSGSLRMQSYRMAYDI 94 Query: 61 QSGSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPW 120 +L H F+Q+L +P L L+ + VP+ ++ RY L W+++ L D + Sbjct: 95 VLAPSRLPGHIDNFEQSLLAPELRILDNFAVPDEIRERYHSLIERWIKLRPELESDDRAF 154 Query: 121 YQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIG-IFTLVFFTLRRIRHQVVAP 179 Y + +VN ID FV ALQ ++E K L V+A+ +GG+G I LV F ++ + ++V P Sbjct: 155 YIEQVGLFVNDIDRFVFALQQHSENK-LQVLAMVGSGGLGLILALVLFLIQYTQRRIVFP 213 Query: 180 LNQLVTASQRIEHGQFDS--PPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKT 237 LN LV ASQ+I++ +FD+ PP NELG+L+ +F M+SEL LY LE + KT Sbjct: 214 LNMLVKASQQIQNREFDAELPPARN---NELGVLSNSFALMASELKGLYADLEHKITTKT 270 Query: 238 RDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNV----GENWRI 293 + L +A + L +LY CS+ L+++ ++ F +L I + + + L L +W I Sbjct: 271 QKLTKANQSLNILYDCSKQLSSTFLNRESFERMLAITLNADGVKALSLQAHNKNQSDWEI 330 Query: 294 SEGQPNPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHF 353 + G P + LP+ + +G L WQ + LL++++S+L RG+Y+N AQK Sbjct: 331 AAGFPEGGEWFE-LPLILDGESFGTLKWQGNPDIVDNNLLSNLASILARGVYYNHAQKQA 389 Query: 354 QQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNA-TAQSIMADFSQALNDA 412 L +MEERAT+ARELHDS+AQ LSYL+IQ +LLKR + NA I D S+ L A Sbjct: 390 MHLAVMEERATLARELHDSIAQSLSYLKIQTSLLKRHLKLINAPDCNDIAHDISKQLRIA 449 Query: 413 YRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQ 472 Y QLRELLT FRL+L D AL EM++TLQ QT+A LT+ L TL++DAQ Q+H+LQ Sbjct: 450 YDQLRELLTAFRLSLSHGDFGLALHEMIETLQGQTTATLTVSSDLDTLSMDAQRQMHILQ 509 Query: 473 IIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERA 532 IIREA NA+KHA A I V C V I D+G+G +E HYGLNIM+ER+ Sbjct: 510 IIREACSNAIKHAKAEHITVRCFQHSH-QARVDITDDGVGFSLIEEKPDHYGLNIMQERS 568 Query: 533 ERLGGTLTFSQPSGGGTLVSISF 555 LGG L + G V+++F Sbjct: 569 SMLGGDLKITTAPEKGCQVTLTF 591 >UniRef50_A5EZZ3 Nitrate/nitrite sensor protein NarQ n=51 Tax=Vibrionales RepID=A5EZZ3_VIBC3 Length = 583 Score = 410 bits (1054), Expect = e-113, Method: Compositional matrix adjust. Identities = 242/566 (42%), Positives = 351/566 (62%), Gaps = 12/566 (2%) Query: 3 VKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQS 62 V+ ++ ++A+A I+ LS L+TG+A++TLASSL DAEA+N++GS+RMQSYRL YD+Q+ Sbjct: 14 VRHSLTRTMAKAMLLILFLSALTTGVAIVTLASSLNDAEAVNVSGSMRMQSYRLAYDIQT 73 Query: 63 GSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPWYQ 122 S AH LF+ +L+SP + L W VP ++ Y L W E+ L+ Y Sbjct: 74 QSHDYKAHIFLFENSLYSPSMLALLDWTVPSDIQQDYYQLIERWHELKKVLNSDQKAQYL 133 Query: 123 ANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQ 182 + +V+ +D FVL LQ ++ERK++ + A+ G GIF + F + IR QVV PLN Sbjct: 134 DQVAPFVSLVDGFVLKLQRFSERKLIALAAVGSFGLGGIFAVSLFVVYYIREQVVRPLNA 193 Query: 183 LVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHE 242 +V AS++I++ FD L+ E+G+L++TFN M+ +L KLYR LE +V EKT L Sbjct: 194 MVDASEKIKNRNFD-VMLEETSSTEMGILSRTFNSMAGDLGKLYRGLEHAVNEKTNKLQM 252 Query: 243 AKRRLEVLYQCSQALNTSQIDVHCFRHILQ--IVRDNEAAEYLEL--NVGENWRISEGQP 298 A + L+VLY SQ L S+I F+ IL+ + + A LE+ G+ + EG+P Sbjct: 253 ANQSLQVLYHSSQELTASRITASNFQTILRHWVALEGICALRLEIEEEAGKPLILQEGKP 312 Query: 299 NPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLL 358 + + +Q P+T+ G L+W+ L+++ + +L R +Y+NQAQ+ +QLLL Sbjct: 313 SGAVMLQT-PLTLDGHHLGFLYWEAGSPEPDRALIDNFALILSRAIYYNQAQRQAEQLLL 371 Query: 359 MEERATIARELHDSLAQVLSYLRIQLTLLKRSIPE-----DNATAQSIMADFSQALNDAY 413 MEERATIARELHDSLAQ LSYL+IQLTLLKRS+ D + ++I+ + + L+DAY Sbjct: 372 MEERATIARELHDSLAQSLSYLKIQLTLLKRSVTPLKSDGDLSKTENIIREIDKGLSDAY 431 Query: 414 RQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQI 473 QLRELLTTFRLTL + +L ML L QT AK+ L+ L ++ALDA QVHL+Q+ Sbjct: 432 TQLRELLTTFRLTLTEGSFGQSLLGMLTQLSGQTDAKIELNNALSSIALDAHQQVHLVQL 491 Query: 474 IREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAE 533 IREA +NA+KHA A++I V+C G V I D+G+G HYG++IM+ERA Sbjct: 492 IREATINAIKHAKATKIKVNC-QEQQGRVQVTIEDDGVGFDLQDHKINHYGMSIMQERAA 550 Query: 534 RLGGTLTFSQPSGGGTLVSISFRSAE 559 RL G L G G V ++++ +E Sbjct: 551 RLRGELKVESAPGKGCKVVLTYQQSE 576 >UniRef50_Q2C653 Hypothetical nitrate/nitrite sensor protein NarQ n=2 Tax=Photobacterium RepID=Q2C653_9GAMM Length = 563 Score = 405 bits (1040), Expect = e-111, Method: Compositional matrix adjust. Identities = 236/555 (42%), Positives = 343/555 (61%), Gaps = 9/555 (1%) Query: 7 VSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQSGSPQ 66 ++ ++AR+ I+++SI++T +AL TL SS D EAINIAGSLRMQSYRL +D+++ SP Sbjct: 10 LTTTIARSLVLILIISIVTTALALTTLVSSQNDVEAINIAGSLRMQSYRLAFDVETKSPL 69 Query: 67 LNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPWYQANIN 126 L+AH + F+ +L+S + L+ W + ++ Y H+ W +++ L + + + ++ Sbjct: 70 LSAHIEQFEHSLYSAPMKGLSYWLISSEIQQHYNHIVLRWEDLHPILERDNNTVFIQHVA 129 Query: 127 NYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTA 186 +V++I+ FV LQ +E K+ + I + G IF +VF+T+R R Q+VAPLN LV A Sbjct: 130 PFVHRINTFVAELQKSSELKLQRLAIIGVIGVSLIFLIVFYTIRYTRQQIVAPLNDLVDA 189 Query: 187 SQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRR 246 ++++ F L+ N NELG+LA TF++MSS+L +LY+ LE SV EKT L A Sbjct: 190 CKQVKRKNFRLDLLN-NSNNELGILAHTFSKMSSDLEQLYQGLERSVNEKTHRLRHANES 248 Query: 247 LEVLYQCSQALNTSQIDVHCFRHILQ--IVRDN--EAAEYLELNVGENWRISEGQPNPEL 302 L+VLY CSQ L+ S + F ++L+ I D A +E G I GQ + Sbjct: 249 LQVLYNCSQQLSVSHLTRVQFTNMLETMIAIDGLIGAKLIIEEPNGSTSNIKVGQQAGQ- 307 Query: 303 PMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEER 362 Q + + + G+L WQ S + L+N++S +L R +Y+N+AQK + LLLMEER Sbjct: 308 HWQYNELYIDGELMGQLWWQYSLPCPDKALINNISQILARAIYYNRAQKQAEYLLLMEER 367 Query: 363 ATIARELHDSLAQVLSYLRIQLTLLKRSIPED--NATAQSIMADFSQALNDAYRQLRELL 420 ATIARELHDSLAQ LSYL+IQL LLKR + ++ N + D L++AY QLRELL Sbjct: 368 ATIARELHDSLAQSLSYLKIQLALLKRELNQNAQNENTHQAVYDIEAGLSNAYTQLRELL 427 Query: 421 TTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLN 480 +TFRL ++ A+ AL +ML+ L+ QT A L +D ++ ++ALDA QVHLLQIIREAVLN Sbjct: 428 STFRLAIKDANFGEALNQMLEPLEEQTDALLIIDNQISSMALDAHNQVHLLQIIREAVLN 487 Query: 481 AMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLT 540 A+KHA+A EI V+C + + V I D+G G HYGLNIM+ERA RL G L Sbjct: 488 AIKHADADEITVNC-QQTEQHIQVTIIDDGKGFDIKDSKRDHYGLNIMQERASRLQGKLK 546 Query: 541 FSQPSGGGTLVSISF 555 G+ + + F Sbjct: 547 IQSGIDQGSAICLRF 561 >UniRef50_P44604 Sensor protein narQ homolog n=30 Tax=Gammaproteobacteria RepID=NARQ_HAEIN Length = 567 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 215/562 (38%), Positives = 347/562 (61%), Gaps = 7/562 (1%) Query: 1 MIVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDL 60 M K VS +A+ F I++++ + + ++L ++S+ DAEAINI+GSLRMQSYRL Y++ Sbjct: 1 MYTKGSVSTRIAKYLFIILIVAGVISSLSLAIMSSNKYDAEAINISGSLRMQSYRLLYEM 60 Query: 61 QSGSPQLNAHRQLFQQALHSPVLTNL-NVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLP 119 Q + + + + +LHS L + N ++ P +K Y ++ W M + D+ Sbjct: 61 QEQPESVETNLRRYHISLHSSALLEVQNQFFTPNVLKHSYQNILQRWTNMEKYARQQDVK 120 Query: 120 WYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAP 179 Y + +YV +D FV LQ ++E+K +L V++ + I +V + + +VV P Sbjct: 121 NYSKQLTDYVADVDYFVFELQRFSEQKWILGVSVLGFAMLLILLMVSYVIWYTNREVVKP 180 Query: 180 LNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRD 239 L+ + AS +++ QF+ PLDT NELG LA+ F QMS+EL +LY LE +V EKT+ Sbjct: 181 LHLMTKASMQVQMRQFNHIPLDTRKQNELGTLARVFTQMSTELGQLYSRLEEAVNEKTQK 240 Query: 240 LHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNV--GENWRISEGQ 297 L + R L LYQ +Q LNT+ I+ +L + ++ ++++ V E+W I+ G+ Sbjct: 241 LRQTNRTLSTLYQSAQLLNTNTINDKILNQVLNYIFISDHLNFVKVEVMGAEHWDITLGK 300 Query: 298 PNPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLL 357 + +QI +++ G L WQ ++ +++ ML R LYF++ + +QLL Sbjct: 301 QDANNELQIETLSVDNEELGVLSWQAGLPCPDPRIMQNLAQMLARALYFHKNLRQKEQLL 360 Query: 358 LMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQ----SIMADFSQALNDAY 413 LMEER+ IARELHDSLAQVLS+L+IQLTLLK ++ +++ ++ +I+A+F QAL+ Y Sbjct: 361 LMEERSIIARELHDSLAQVLSFLQIQLTLLKHNLKKEDEQSKEKSLAIIANFEQALSGGY 420 Query: 414 RQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQI 473 QLRELL TFRLT+Q+A+L AL++++D+L++QT+ ++ ++C+LP+ +L+ Q VH+LQI Sbjct: 421 AQLRELLATFRLTIQEANLQLALKQVIDSLRSQTTMQMNVNCQLPSQSLNPQQLVHVLQI 480 Query: 474 IREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAE 533 +REA NA+KH+ + I +S +G + + + D+G+GI +EPEGHYGLNIM ER Sbjct: 481 VREATTNAIKHSQGTVIEISARINAEGEYEILVEDDGVGIPNLEEPEGHYGLNIMAERCR 540 Query: 534 RLGGTLTFSQPSGGGTLVSISF 555 +L L + GGT V I+ Sbjct: 541 QLNAQLHIHRREQGGTQVKITL 562 >UniRef50_B2CI54 Integral membrane sensor signal transduction histidine kinase n=1 Tax=Pantoea sp. MMB051 RepID=B2CI54_9ENTR Length = 515 Score = 380 bits (977), Expect = e-104, Method: Compositional matrix adjust. Identities = 235/553 (42%), Positives = 323/553 (58%), Gaps = 57/553 (10%) Query: 4 KRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQSG 63 +R V+ SLARA F IVLL++ + ++LLTL++S RDAEA+N+AGSLRMQSYRL +D + Sbjct: 14 ERSVTRSLARALFAIVLLAVFCSFLSLLTLSASQRDAEALNMAGSLRMQSYRLAWDASAH 73 Query: 64 SPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPWYQA 123 L A +Q+++ SP L L +VP++VK RY L A+W + L GD +Q Sbjct: 74 PAALAADIASYQRSVQSPALLALRHAWVPDSVKARYRELLASWQSLQPELQTGDSRRFQQ 133 Query: 124 NINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQL 183 N++ YV QID FVLALQ +AE KM L V L I I Sbjct: 134 NVSLYVEQIDSFVLALQRWAELKMKLAVGACLLSFIAIL--------------------- 172 Query: 184 VTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEA 243 LLAK F +MS EL K Y LE +V+EKT L +A Sbjct: 173 --------------------------LLAKAFCRMSGELEKQYLWLEQAVKEKTAHLRQA 206 Query: 244 KRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELP 303 RRL++LYQCS+ L + L + +++E + L+ W++S GQ + L Sbjct: 207 NRRLKLLYQCSEILRGHD---KAYSRALALAKEHENLSAVALSAPPRWQLSVGQEDTALA 263 Query: 304 MQILPVTMQETVYGELHWQNSHVSSSEP-LLNSVSSMLGRGLYFNQAQKHFQQLLLMEER 362 LP +++T+ G L WQ S+SEP L+ ++SML R L ++A++ + LLLMEER Sbjct: 264 WHSLP--LEQTIGGVLRWQ---ASASEPQLMKGLASMLARSLQLDEAEEKVRHLLLMEER 318 Query: 363 ATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTT 422 ATIARELHDSLAQ L YLRIQ+T LK + +++A A +I+++ AL +A RQLRELLTT Sbjct: 319 ATIARELHDSLAQSLVYLRIQMTRLKGIVGKESAPA-AIVSEVDAALAEANRQLRELLTT 377 Query: 423 FRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAM 482 FRL+++ ADL +AL +++ L+ QT A + L L+A QVH+LQI+REA+LNA+ Sbjct: 378 FRLSIEPADLATALAQVIAQLRPQTEAVIQLTGDTQPQHLNAHQQVHVLQIVREALLNAI 437 Query: 483 KHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFS 542 +HA ASEI V + + + DNG G +P E GHYGL IM+ERA+ LG TL Sbjct: 438 RHAQASEIEVRVARPEEKLLQIEVNDNGQGFNQPGEKPGHYGLAIMQERAKSLGATLEIG 497 Query: 543 QPSGGGTLVSISF 555 Q GGT VS+ F Sbjct: 498 QTEYGGTRVSLRF 510 >UniRef50_A0KIL7 Nitrate/nitrite sensor histidine kinase NarQ n=2 Tax=Aeromonas RepID=A0KIL7_AERHH Length = 570 Score = 354 bits (909), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 221/558 (39%), Positives = 318/558 (56%), Gaps = 14/558 (2%) Query: 7 VSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQSGSPQ 66 VS+++ R+ I+ ++ L +A++TL S+ DA+AIN++GSLRMQ+YR+ Y+++ G Sbjct: 10 VSSAIGRSMVLILFMASLIAVVAMVTLFYSVPDAKAINLSGSLRMQAYRMAYEIEQGQQV 69 Query: 67 LNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPWYQANIN 126 L+ Q F+Q LH+ L W P +++ Y + W M + Y N Sbjct: 70 LSRLDQ-FEQTLHAAELQETQRWITPASLRRTYGEVLQQWQVMREHIENATPRRYTDNTE 128 Query: 127 NYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTA 186 +V ID FV +Q++ E K+ ++ G + I T+ +FT+R R QVVAPLNQLV Sbjct: 129 QFVAAIDDFVNQMQYHVEFKVRMLALAEGLGLLSIITIAWFTVRFTRQQVVAPLNQLVYC 188 Query: 187 SQRIEHGQFDS--PPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAK 244 +++I+ +F+ PP NELG L+ F M+ EL KLYR LE+ VEEKT L +A Sbjct: 189 ARQIQRQEFNLTLPPY---CENELGELSGAFVTMADELGKLYRELESKVEEKTAKLQQAN 245 Query: 245 RRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISE------GQP 298 L LY +Q L+ + + +L+ ++ +Y+ L E+ + + G P Sbjct: 246 DTLSFLYSTAQKLHAAPLSRRTLLKLLERAAAHQHIDYIRLTRFEHNAMPDYITGRKGWP 305 Query: 299 NPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLL 358 + + M E YG L +SH E L+ + S +L + L+ +Q Q+LLL Sbjct: 306 GDLDAVVSFYLQMDEQEYGRLDVISSH-PIDERLMKNFSMLLAQVLHKDQTLLQHQRLLL 364 Query: 359 MEERATIARELHDSLAQVLSYLRIQLTLLKRSIPE-DNATAQSIMADFSQALNDAYRQLR 417 MEERA IARELHDSLAQ LSYL+IQ TLLKR + D A++ M + L AY QLR Sbjct: 365 MEERAVIARELHDSLAQALSYLKIQSTLLKRFFAKGDTVKAEAAMQQIDEGLGSAYTQLR 424 Query: 418 ELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREA 477 ELL TFRL++ A+L A++ ML+ L+ QT A + L L L+A +H+LQ+IREA Sbjct: 425 ELLGTFRLSIGDANLGEAIKVMLEQLKPQTQADIRLHYGLADTDLEAGQHIHILQLIREA 484 Query: 478 VLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGG 537 VLNA+KHA+A I VSC T DGN V I D+G+GIG HYGL+IM ERA +L G Sbjct: 485 VLNAIKHASAQVIDVSCETLADGNIQVQISDDGVGIGIASSAVNHYGLSIMNERASKLHG 544 Query: 538 TLTFSQPSGGGTLVSISF 555 LT S+ GT V ++F Sbjct: 545 LLTISERPPRGTCVHLTF 562 >UniRef50_B8EB80 Histidine kinase n=20 Tax=Shewanella RepID=B8EB80_SHEB2 Length = 611 Score = 313 bits (802), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 192/526 (36%), Positives = 291/526 (55%), Gaps = 16/526 (3%) Query: 28 IALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQSGSPQLNAHRQLFQQALHSPVLTNLN 87 A++ L+ SL DA+AIN +GSLRMQSYRL + SGS F+ L+S L + Sbjct: 32 FAIINLSYSLGDAKAINASGSLRMQSYRLMFYANSGSDAAQDKITEFENTLYSDTLKPSD 91 Query: 88 VWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPWYQANINNYVNQIDLFVLALQHYAERKM 147 W+ P + +Y + WL M + + + Y A++ ++V+ IDL VL ++H+A K+ Sbjct: 92 SWFSPRKIADQYQLVIDKWLVMKYYIEQENSRDYVASLKDFVDTIDLLVLEMEHHAAFKL 151 Query: 148 LLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNE 207 L+ A + G + + F +R + +VV PL +L+ ++ I G F+ +T E Sbjct: 152 RLLAASQILGLSVMLIIAFVAVRFTKKKVVIPLQKLMESANTISKGNFEIEMPETEYI-E 210 Query: 208 LGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCF 267 L L + + EL LY LE+ V EKT L A L LY LN +++D Sbjct: 211 LTALTHALQKTAKELAMLYGDLESQVAEKTLALTRANNELAFLYDNLLTLNANKLDYKAL 270 Query: 268 RHILQIVRDNEAAEYLELNVG------ENWRISEGQPNPELPMQILPVTMQETVYGELHW 321 + L ++ E+ +YL L + E G P P+ ++ G L Sbjct: 271 KAALNQLKGYESLDYLRLIIQYPEQELEVIEADGGWPEVTQNSTRFPLQFEQANLGYLEL 330 Query: 322 QNSHVSSSEP---LLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLS 378 ++ P L N+ + ML R + + A + QQL LMEER IARELHDSL QVLS Sbjct: 331 ----IADQTPNIALFNNFAIMLTRSIVIHNATEQRQQLALMEERGVIARELHDSLGQVLS 386 Query: 379 YLRIQLTLLKRSIPED--NATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSAL 436 +L+IQ++LL++++ N T ++ + + ++ ++ AY QLRELL+TFRLT+++ DL SAL Sbjct: 387 FLKIQISLLRKNLDHSCRNPTIEAQLTEINEGVSTAYVQLRELLSTFRLTIKEPDLKSAL 446 Query: 437 REMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVT 496 ML+ L+ +TS K+TLD +L L+A+ +H+LQI REA LNA+KHA AS I + C Sbjct: 447 EAMLEQLRTKTSIKITLDYKLAPQWLEAKQHIHILQITREATLNAIKHAEASLINIHCYK 506 Query: 497 APDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFS 542 +G + + DNGIGIG KE + H+G+ IM ERA +L G + FS Sbjct: 507 DDEGMVNINVCDNGIGIGHLKERDQHFGIGIMHERASKLSGKVVFS 552 >UniRef50_A6FC55 Hypothetical nitrate/nitrite sensor protein NarQ n=1 Tax=Moritella sp. PE36 RepID=A6FC55_9GAMM Length = 572 Score = 297 bits (760), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 202/556 (36%), Positives = 301/556 (54%), Gaps = 17/556 (3%) Query: 11 LARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQSGSPQL--N 68 + R F I+ L+ + T I+L+ L+ SL DA +IN AG+LRMQSY++ Y+L +L Sbjct: 16 IGRGMFSILALASMLTFISLVALSLSLSDASSINKAGALRMQSYQIAYNLSRDESELMRQ 75 Query: 69 AHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPWYQANINNY 128 H F Q+L ++ W + +K + + W + ++ L + + ++ + Sbjct: 76 GHIDTFNQSLAHIKNNIVDNWDISSKLKQEFIIVETQWQKQSDILHSDNPEQFLLYVDEF 135 Query: 129 VNQIDLFVLALQHYAERKMLLVVAISLAGGIGI---FTLVFFTLRRIRHQVVAPLNQLVT 185 V++ID FV LQ+++E K V I+L G+GI F + T+R ++ QV+ PL Q+ Sbjct: 136 VSEIDTFVQNLQNHSEYK---VKVITLIKGLGIGLIFAVCIITIRLMQVQVLKPLQQIFA 192 Query: 186 ASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKR 245 AS RI G+FD D NE+G LA + M+++L++LY +LE V+ KT+ L EAK Sbjct: 193 ASNRIRKGEFD-VSFDFFYENEIGSLASNISHMANDLNQLYSTLEQQVDAKTKQLKEAKD 251 Query: 246 RLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVG----ENWRISEGQPNPE 301 ++ LY SQ L+ + ++ LQ V + + L + E ++ G N E Sbjct: 252 KINFLYTTSQKLHVTHLNADMLEQTLQSVSELNGLSFYNLILTGSEVETIYLNAGADNGE 311 Query: 302 LPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEE 361 + L + ++E +G L + E L S ++ R + +Q+ Q+ LLMEE Sbjct: 312 QTID-LKLELEEQSFGTLTVLKREANDQEHL-RSYCRIISRAQHRSQSNLEAQRSLLMEE 369 Query: 362 RATIARELHDSLAQVLSYLRIQLTLLKRSIP--EDNATAQSIMADFSQALNDAYRQLREL 419 RA IARELHDSLAQ LSYL+IQ+ LLKR + E T I+ + L +Y QLREL Sbjct: 370 RAVIARELHDSLAQALSYLKIQVALLKRHLKNQEVTPTTNEIVEEIDVNLRVSYTQLREL 429 Query: 420 LTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVL 479 L TFRLTL A+L A+ ML L+ +T +K+ L L +H+LQIIREAVL Sbjct: 430 LNTFRLTLDDANLSEAISIMLAQLRQRTKSKIHLSYELEEHLFKPNQHIHILQIIREAVL 489 Query: 480 NAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTL 539 N++KHAN++EI + C T +G V I D+G GI HYGL IM ERA +LG L Sbjct: 490 NSIKHANSNEIMIDCGTNKNGTIEVSISDDGDGIPADPTKSNHYGLTIMDERASKLGAKL 549 Query: 540 TFSQPSGGGTLVSISF 555 GT V ++F Sbjct: 550 EIKNNIIKGTSVLLTF 565 >UniRef50_Q5QWJ9 Nitrate/nitrite sensor histidine kinase n=1 Tax=Idiomarina loihiensis RepID=Q5QWJ9_IDILO Length = 598 Score = 251 bits (640), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 184/582 (31%), Positives = 292/582 (50%), Gaps = 52/582 (8%) Query: 18 IVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQSGSP-QLNAHRQLFQQ 76 IV+++ S+ A L S +DAE IN+AGS RM++Y+ L SG Q + Q Sbjct: 18 IVIVASASSLSAFWLLEKSEQDAELINVAGSHRMKAYKFALQLSSGKKVQASETAQEIDT 77 Query: 77 ALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPWY---QAN-INNYVNQI 132 P+L + + +++ W +++ +++ D + Q+N I+NYVNQ+ Sbjct: 78 LWEQPLL-HRHFVKAGGSIQQLAKDARTEWQRVHSEIAEQDFARFSQQQSNAIDNYVNQL 136 Query: 133 DLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEH 192 D V LQ ++ER+M V + I + FF L ++ ++ PL L+ S+R+ Sbjct: 137 DTLVGQLQEHSERRMETVRSSLALASFFIVAIFFFLLTVLKRKINQPLRHLLAVSKRLGQ 196 Query: 193 GQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQ 252 G F + N +E+G L++T N+MS + Y LE VE++T++L + L LY Sbjct: 197 GDFTAKSKIDN-EDEIGQLSRTMNKMSETVSYFYGGLERRVEQQTQELSRKNKVLSFLYD 255 Query: 253 CSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQ 312 ++++ D + ++ +++ + E E+N E ++E P L +Q P + + Sbjct: 256 TARSIIVHSYDYNNYQQVIE-----KLYEIGEVNDIELCLLTEEGNRPFLQLQPRPSSHE 310 Query: 313 ETVYGEL-------------------------HWQNSHV------------SSSEPLLNS 335 G+ QN V + + L++S Sbjct: 311 PCEAGDCATCLKAGPGASVIEDKLVYRFVLKREDQNYGVLIVRCEQGQPLATWQQQLMSS 370 Query: 336 VSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPE-D 394 + L ++ ++L LM ER IARELHDSLAQ LSYL+IQ+T L + I + D Sbjct: 371 TADQLALSQSLKSEEEQVRRLALMHERTVIARELHDSLAQALSYLKIQVTRLHKGIEKND 430 Query: 395 NATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLD 454 AT + + + LN AYRQLRELLTTFRL + + L SAL+ + L Q++ + LD Sbjct: 431 RATIDDVSNELREGLNSAYRQLRELLTTFRLKVDGSGLYSALQTTVKQLTEQSNMVVHLD 490 Query: 455 CRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHT-VYIRDNGIGI 513 RL + L ++HLLQIIREA NA+ H+ SE+ +S ++ P G + I D+GIG+ Sbjct: 491 YRLNNIPLVPHEEIHLLQIIREASQNAVNHSQGSEVHIS-LSQPSGQDVELKITDDGIGL 549 Query: 514 GEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 E E HYGL IM+ER+ LGG + S+ GGT V +F Sbjct: 550 PENAEKVNHYGLAIMQERSRNLGGEIKISRLESGGTEVCFTF 591 >UniRef50_Q0A9X9 Signal transduction histidine kinase, nitrate/nitrite-specific, NarQ n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A9X9_ALHEH Length = 644 Score = 245 bits (625), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 190/576 (32%), Positives = 288/576 (50%), Gaps = 69/576 (11%) Query: 39 DAEAINIAGSLRMQSYRLGYDL------QSGSPQLNAHRQLFQQALHSPVLTNLNVWYVP 92 DA AIN+AGSLRMQSYR+ L Q+G+ L+A F++ LHSP L Sbjct: 47 DAAAINVAGSLRMQSYRIATTLLDDQGPQAGAKTLDAEVAAFERRLHSPELLRPIPANPD 106 Query: 93 EAVKTRYAHLNANWL-EMNNRL----SKGDLPWYQANINNYVNQIDLFVLALQHYAERKM 147 + V+ + ++ W E+ L S G Y ++ +V +D V A Q AE ++ Sbjct: 107 DPVREAWEEVHRQWTTELKPLLVDGSSAGSPVRYLDQVDRFVGTVDNLVTAAQSAAEARI 166 Query: 148 -----LLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDT 202 + V+A++L G LV + L R+ ++V P+ QL + R+ G F++ Sbjct: 167 HNSQSVRVLAMALLSG-----LVLYGLYRLHMRLVLPVQQLNYVAGRLMKGDFEARA--R 219 Query: 203 NLPN-ELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQ 261 LPN ELG+ A+TFN+M+ L + RSL V EKT +L LE++Y S+ L+ Sbjct: 220 YLPNDELGMYARTFNRMADTLTDMQRSLAHRVSEKTAELRRRNSALELVYNASRDLSAGA 279 Query: 262 IDVHCFRHILQ--------------IVRDNEAAEYLELNVGENWRISE-GQPNPELPMQI 306 ++ + +L + + + L+ R + P+ + M + Sbjct: 280 LESSNLKAMLDTLERVTGLGPLSICLAQPGADKSFETLSTSAESRPARCSAPDCKGCMNV 339 Query: 307 ---------------LPVTMQETVYGELHWQNSHVSSSEP------LLNSVSSMLGRGLY 345 LP+ + YG L Q + +P L +V+S + Sbjct: 340 VPRHGGGVVCPGMLALPLEDRNVRYGLL--QVEYTPGDQPRGWQLHLAETVASHIAAACA 397 Query: 346 FNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQ--SIMA 403 + +++LMEERA IARELHDSLAQ LSY++IQ+ L+ + +++ AQ +I++ Sbjct: 398 RERELDAEHRIVLMEERAVIARELHDSLAQALSYMKIQVARLQGLMRKEHEPAQLEAILS 457 Query: 404 DFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALD 463 + LN AY QLRELLTTFRL + L SALR+ + + + LD RL L+ Sbjct: 458 ELRDGLNSAYEQLRELLTTFRLGMDSPGLESALRKAVKEFSERGDIPIRLDYRLSHWPLN 517 Query: 464 AQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIR--DNGIGIGE-PKEPE 520 A ++HLLQI REA+ N ++H+ A+ V V AP NH V + DNG+G+ +EP Sbjct: 518 ANEEIHLLQIAREALANVVRHSQATRADV--VVAPGSNHDVVLEVLDNGVGLAAVSEEPG 575 Query: 521 GHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFR 556 HYG IM+ERAE LGG L +GGG V ++FR Sbjct: 576 HHYGTAIMQERAEGLGGMLRLGNRAGGGMRVMLTFR 611 >UniRef50_Q1ZGB4 Nitrate/nitrite sensor protein n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZGB4_9GAMM Length = 549 Score = 238 bits (607), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 170/554 (30%), Positives = 281/554 (50%), Gaps = 32/554 (5%) Query: 18 IVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQSG---SPQLNAHRQLF 74 I+L+S++ T S + D +I+ G ++ +++L Y LQ+ +P L A Sbjct: 2 ILLISVVHLLATFSTFDSHIADTRSISKLGEFKINTFKLLYALQNDPEKTPLLLAE---I 58 Query: 75 QQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPWYQANINNYVNQIDL 134 + + L + W+ ++ A L A W + ++ D+ + ++ I+ Sbjct: 59 ENTIRPAKLLK-SSWFNTHSLNENSALLLARWQSIEEAFAQNDVAGAHVKLLYFIKSINR 117 Query: 135 FVLALQHYAERKMLLV-----VAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQR 189 + Q A++KM LV +A L G+F L F++ ++ + P+NQL + Sbjct: 118 VIDQYQTLADQKMTLVHLAEFIAFMLLACTGLF-LYFYS----KNYISEPINQLAKNVES 172 Query: 190 IEHGQFDSPPLDTNLP---NELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRR 246 I+ Q+D N P NE G+LA+ M +E+ +L ++ V +KT++L A + Sbjct: 173 IKKHQYD-----VNFPHYKNEFGILAQGMRDMYAEIQQLISQMKTQVHQKTQELENANQT 227 Query: 247 LEVLYQCSQALNTSQIDVHCFRHILQ--IVRDNEAAEYLELNVGENWRISEGQPNPELPM 304 + L SQ L + ++ L + + N +ELN G + G Sbjct: 228 IAFLLSISQQLGSVKLTSPVLYDALNALVKQANLKRVCIELNNGTFIQSKSGCSGINCRN 287 Query: 305 QILPVTMQETVYGELHWQNSHVSSSE-PLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERA 363 P+ + YG L++ + + S + L+ S S ++ R L + + Q++L+MEER Sbjct: 288 SRFPIVINGKPYGFLNYYSENESPEQRALIESFSVLIARALCQQENVQQTQKILIMEERN 347 Query: 364 TIARELHDSLAQVLSYLRIQLTLLKRSI--PEDNATAQSIMADFSQALNDAYRQLRELLT 421 IARELHDS+AQ LS+L+IQ T+L + + E QSI +A++DAY QLR LL+ Sbjct: 348 IIARELHDSIAQSLSFLKIQCTVLHQQVHQKEQQKALQSIH-HIDEAISDAYAQLRSLLS 406 Query: 422 TFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNA 481 TFRLT ++ A++ ++ TLQ QTSA++TL A Q+HLLQI+REA++NA Sbjct: 407 TFRLTATHSNFKEAVQMLISTLQKQTSAQITLKEFSTHFYSAANQQIHLLQIVREAIINA 466 Query: 482 MKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTF 541 +KHA+ I VSC+ PD N + I D+G GI E HYG++IM +R++ +G T + Sbjct: 467 IKHADCQHIDVSCLLTPDNNIWISIIDDGKGITNTSAIENHYGISIMEQRSDEIGATFSI 526 Query: 542 SQPSGGGTLVSISF 555 P GT V + F Sbjct: 527 L-PLASGTEVKLIF 539 >UniRef50_Q2SF45 Signal transduction histidine kinase, nitrate/nitrite-specific n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SF45_HAHCH Length = 620 Score = 236 bits (603), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 196/607 (32%), Positives = 297/607 (48%), Gaps = 76/607 (12%) Query: 15 FFYIVLLSILSTGIALLTLASSL-------RDAEAINIAGSLRMQSYRLGYDLQS----G 63 F + L I +A++T+ +S +DAEA+NIAGSLRMQSYR+ L + Sbjct: 10 IFRMGALMIAMVSLAMITMLASFFISESAEKDAEAVNIAGSLRMQSYRMQARLLTLDTPP 69 Query: 64 SPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEM----NNRLSKGDLP 119 S + A + F + + +PVL V EA+K + L+ ++++ N +S G + Sbjct: 70 SDFVAALTRQFAERIENPVL-------VAEAMKDDSSELHRQFMQVRESWENDVS-GFIA 121 Query: 120 WYQAN------------INNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFF 167 Y N I+ +V++ID V Q AE ++ + I ++ F LV F Sbjct: 122 TYAHNPDRRVADQLGEKIDKFVDEIDNLVQLYQIRAEDRIENLRLIQISALFLTFALVSF 181 Query: 168 TLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYR 227 +L + H V PL L +++I G F S L+ +ELGLLA+TFNQMS L ++Y Sbjct: 182 SLLILHHHVELPLRSLTQNARKIARGDF-SDRLEVKNDDELGLLAETFNQMSDALSEMYE 240 Query: 228 SLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNV 287 SLE V+ KT+ L + L LY ++ ++ + F+ L+ + A +EL + Sbjct: 241 SLETRVKNKTQALKRSNDSLNFLYHLAREVSEKTHENIDFQAWLEELTSITAVGGVELCL 300 Query: 288 G----------------------------ENWRISEGQ---PNPELPMQILPVTMQETVY 316 E + + Q N E+ ++ P+ + Y Sbjct: 301 KTPEAVIPYEHIRNDYMTELPSSCQRQECEKCMVEKAQVCRDNDEVQVR-YPLIKEGVQY 359 Query: 317 GEL--HWQNSHVSSS--EPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDS 372 G + +NS S LL S S + L +++ LM ER IARELHDS Sbjct: 360 GVIVCTLRNSQYLESWQHQLLQSFSDQVAVALSLKNQGDQERRVSLMNERNVIARELHDS 419 Query: 373 LAQVLSYLRIQLTLLKRSIPE---DNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQ 429 LAQ LSYL+IQ+ L R++ ++ I A+ + + AYRQLRELLTTFRL++ + Sbjct: 420 LAQSLSYLKIQVARLTRALQSKQVEDEQIDGITAELKEGITSAYRQLRELLTTFRLSISE 479 Query: 430 ADLPSALREMLDTLQNQ-TSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANAS 488 L +A+ ++ L Q T+ K+ LD R+ + ++HLLQI REA+ NA++H+ + Sbjct: 480 KGLHAAILHTVEQLTEQSTNVKIVLDYRVEDIPFSPNEEIHLLQITREALQNAVRHSQGN 539 Query: 489 EIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGG 548 + VS + P T+ I DNG+GI E E HYGL IMRER L G L + GG Sbjct: 540 LVTVSLHSDPKKKVTLAIIDNGVGIPEDPEKLNHYGLAIMRERTRNLHGELAIQRIPEGG 599 Query: 549 TLVSISF 555 T V SF Sbjct: 600 TAVLFSF 606 >UniRef50_B7UUR7 Two-component sensor NarX n=7 Tax=Gammaproteobacteria RepID=B7UUR7_PSEA8 Length = 622 Score = 234 bits (598), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 189/606 (31%), Positives = 292/606 (48%), Gaps = 76/606 (12%) Query: 2 IVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQ 61 I++R + +V L+++ ALL + +DA IN AGSLRM +YR+ + Sbjct: 26 ILRRSLVVRFGCYLTLLVSLALIGMFSALLFADYTHQDAAVINHAGSLRMLTYRVALE-- 83 Query: 62 SGSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYA-----HLNANWLEMNNRLSKG 116 P L +QAL + L+ + ++ + A L+ E RL Sbjct: 84 ---PSLEG-----RQALLGTLGERLDSGDIRRLLQRQDADDPIRQLHQELREGLARLDPR 135 Query: 117 DLPWYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFT---LVFFTLRRIR 173 LP +A ++ YV ID FV LQ AER+ L+ + G+ +F +VF TL + Sbjct: 136 ALPG-RAVLDAYVGDIDRFVGILQAKAERRSQLLSTVQ---GLCLFLSLLVVFVTLYDLS 191 Query: 174 HQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASV 233 + V+ PL +L + ++R+ G+ D+ + + +EL L + FNQM+ EL +Y LE V Sbjct: 192 YHVIGPLRELTSTARRLGRGELDAR-VTYSGEDELAQLGERFNQMAGELKSIYGDLEERV 250 Query: 234 EEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCF--------------RHILQIVRDNEA 279 E+KTR L ++ +RLE+LY ++ L + D R L + +D Sbjct: 251 EDKTRALSQSHQRLELLYASARRLGENPYDSRTLQPLLNQLEKVLDAGRVTLCLNKDGVE 310 Query: 280 AEYLELNV----------GENWRISE-----GQPNP-ELPMQILPVTMQETVYGEL---- 319 Y L G+ E QP+ P+ + P+++ +GEL Sbjct: 311 RAYSSLTTTERPADFCLQGDCGSCREQASACDQPSSLAQPLLMQPLSIAGHRFGELFIES 370 Query: 320 ------HWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSL 373 +WQ + L+ + + R + Q+ +L L ER TIARELHDSL Sbjct: 371 RSGRLENWQ-------QQLIETFCDNIARTFALSLQQEQESRLALFAERGTIARELHDSL 423 Query: 374 AQVLSYLRIQL----TLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQ 429 AQ LSYL+IQ+ TLLKR P + + + + + LN AYRQLRELLTTFRL+L + Sbjct: 424 AQSLSYLKIQVSRLGTLLKREAPAEKI--EDTLDELREGLNGAYRQLRELLTTFRLSLDE 481 Query: 430 ADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASE 489 L +AL + + + LD RL + L ++H+LQI+REA+ N ++H+ A Sbjct: 482 PSLEAALGNAVAEFGERGEVTIELDNRLQHVPLSPNEEIHVLQIVREALSNVVRHSQAQR 541 Query: 490 IAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGT 549 V + DG ++ + D+G+G + GHYGL IM+ER + LG L F + GT Sbjct: 542 AWVRLSSQADGQVSIAVEDDGVGFDPQQNRSGHYGLTIMQERGQTLGSQLRFEARAPHGT 601 Query: 550 LVSISF 555 V SF Sbjct: 602 RVLFSF 607 >UniRef50_A4BGQ5 Signal transduction histidine kinase, nitrate/nitrite-specific n=1 Tax=Reinekea blandensis MED297 RepID=A4BGQ5_9GAMM Length = 562 Score = 233 bits (594), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 183/586 (31%), Positives = 294/586 (50%), Gaps = 53/586 (9%) Query: 4 KRPVSASLARAFFYIVLLSILSTGIALLTLASSLR-DAEAINIAGSLRMQSYRLGYDLQS 62 + PV++ L + L+ +S G+ L + + L DA+A+N++GSLRMQSYR+ Y L+ Sbjct: 6 RYPVASLLIIGLITLAALAAVS-GLYTLWMTTVLSGDAKAVNLSGSLRMQSYRIAYLLEQ 64 Query: 63 GSPQLNAHRQL--FQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKG---- 116 +PQ + L F++ L S L + + + HL A + + R + Sbjct: 65 DAPQEHIASLLDTFEERLTSAALKG--------QIPSDHPHLTAAFSTVEQRFEQMHTAA 116 Query: 117 -DLP-WYQANINNYVNQIDLFVLALQHYAERKM-------LLVVAISLAGGIGIFTLVFF 167 + P Y ++ +V ID V L+ ++E K+ +L+ +SL I +F ++ Sbjct: 117 IETPEIYLQEVDAFVEDIDTMVAQLESWSENKVQNLREQQILITLLSLLAAI-LFAII-- 173 Query: 168 TLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYR 227 I +VV PL +L+ RI G S +D +E G LA T N+M+ E+ +++ Sbjct: 174 ----INRRVVLPLQRLIRTVHRIGRGD-RSARVDFQGRDEFGRLASTLNRMADEISQVHG 228 Query: 228 SLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNV 287 SLE++++E+T +L R LE L+ SQ L+T + D+ +H ++ E L L Sbjct: 229 SLESTIQEQTAELSRNNRILEFLFTLSQRLSTEKPDITALKH--------QSVEELRLIC 280 Query: 288 GE---NWRISEGQPNPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGL 344 E NW + +P+ + + Y +N + + LL +VS + + Sbjct: 281 PEHSINWHQQMYETSPQ---GYVVRCDADQSYLICEQRNGLTAWQKQLLQTVSDLFDNAI 337 Query: 345 YFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLT-LLK-RSIPEDNATAQSIM 402 A H ++ L+ ER++IARELHDSLAQ LSYL+IQ+ L+K R D T SI+ Sbjct: 338 SRMGAYDHENRIALLNERSSIARELHDSLAQQLSYLKIQVVRLVKLRERQADEETLNSII 397 Query: 403 ADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQT---SAKLTLDCRLPT 459 + LN +YR+LRELL TFR L + L +++ +D + + L ++ P Sbjct: 398 DELRDGLNSSYRKLRELLVTFRSQLDEPGLLPSVKAAIDDVNRMSPNCQIHLYIEDNWPE 457 Query: 460 LALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEP 519 L ++H + +IREA+ N +KHA A VS P V I D+GIG GE Sbjct: 458 -TLTPSQEIHCMHVIREAITNVVKHAKAENAVVSMKRLPSNTLQVTINDDGIGFGETLTK 516 Query: 520 EGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEESQL 565 HYGL+IM ERA R+GG + + + GG V+++F EE +L Sbjct: 517 PMHYGLDIMAERAIRIGGNIDYKNLNHGGAGVTLTFPLNASEEDRL 562 >UniRef50_C7RBW7 Histidine kinase n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RBW7_KANKD Length = 584 Score = 229 bits (583), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 186/576 (32%), Positives = 285/576 (49%), Gaps = 44/576 (7%) Query: 18 IVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDL---QSGSPQLNAHR--- 71 IV L++ S ++ S DA IN+AGSLRMQS RL L Q+ LNA Sbjct: 4 IVALALASLITSMFVSESLDGDAAQINVAGSLRMQSIRLSRALTAEQNNLDILNATTATD 63 Query: 72 --QLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPWYQ--ANINN 127 + F++ L + L + + + L W E+ +++ + + I+ Sbjct: 64 EIREFERRLSILLSHGLIANSGNQKIVDIHKVLEQQWFEIKTQVNTNPARFETDYSLIDQ 123 Query: 128 YVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTAS 187 +V ID V LQ +E+K+ ++ I + F L RI +V P+N LV A+ Sbjct: 124 FVGTIDRLVSILQSESEKKIRVLRMIQGSALFLTLLTAFIALYRINRSIVQPMNNLVAAA 183 Query: 188 QRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRL 247 + G F+ D + +E+GLL TFN+MS+ L ++ LE V+EKT L + + L Sbjct: 184 KEASKGNFNVRVSDIS-NDEIGLLGTTFNEMSTRLQIIHNHLEEKVQEKTTKLERSNKSL 242 Query: 248 EVLYQCSQAL---NTSQIDVHCFRHILQIVRDNEAAEYLELNV-GENWRISEGQPNPELP 303 E+LYQ S L N+ + + + Q + D + L+ V + RI Q ELP Sbjct: 243 ELLYQTSHNLVRANSRRDFENLLAQVEQTIGDGQVILCLDQKVQNSHQRIPISQH--ELP 300 Query: 304 MQI-----------------LPVTMQETVYGELHWQNSHVSSSE---PLLNSVSSMLGRG 343 + Q+ YG L + ++ + LL +++ + Sbjct: 301 KNCDQIHCSQCKISNNIRHSFHIHKQDKDYGSLQYFSNKGKPEQWVHNLLQAIADNIAVA 360 Query: 344 LYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPE--DNATAQSI 401 + +Q + LLLMEERA IARELHDSLAQ LS+L++Q +LL R + + + T ++ Sbjct: 361 ISLDQKRAQENLLLLMEERAVIARELHDSLAQSLSFLKLQTSLLSRQLDKNLERNTIENT 420 Query: 402 MADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLA 461 + D LN+AYRQLRELLTTFRL +++ L SAL+ + + ++ LD + Sbjct: 421 IGDLKDGLNNAYRQLRELLTTFRLQIEEPSLESALKGTVAEFSTKCGYEVELDYSITNQT 480 Query: 462 LDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKE-PE 520 L + Q+H LQIIREA+ N +H+ AS+ V ++ G V + DNGIGI P E PE Sbjct: 481 LTSNQQIHALQIIREALSNVQRHSQASKAWVK-LSIQGGKVHVEVIDNGIGI--PDEMPE 537 Query: 521 G-HYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 G HYGL+IM ERA L + + GT+V ++ Sbjct: 538 GTHYGLSIMNERAASLNANIDIRKAPPQGTIVEMTL 573 >UniRef50_D2T798 Sensor for nitrate reductase system, protein histidine kinase (Acts on NarP and NarL) n=2 Tax=Erwinia pyrifoliae RepID=D2T798_ERWPY Length = 326 Score = 228 bits (580), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 133/321 (41%), Positives = 193/321 (60%), Gaps = 4/321 (1%) Query: 236 KTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISE 295 K ++ +A RRL +L CS+ L+ S F+ L +V +E +LEL+ E +S Sbjct: 2 KHANVRQANRRLRLLIACSELLSHSTQGQRAFQQTLALVVSHEKLAWLELSAPEFGVLSA 61 Query: 296 GQPNPELPMQILPVTM-QETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQ 354 G+ + L + G+L WQ + P++ S+++ML L + Q+ Sbjct: 62 GKKAGQTRWHSLSLRHPSRPPGGKLRWQGA--RPLRPIIKSLAAMLANALERWRNQQQIH 119 Query: 355 QLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYR 414 LL+ +ERATIA ELHDSLAQ L++ RIQL L+R+I D+ TA I+A Q+L A R Sbjct: 120 GLLIQQERATIAAELHDSLAQELTFQRIQLVRLRRAIEPDDTTALDIVAGMEQSLTGASR 179 Query: 415 QLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQII 474 QLRELL FRLT+ A L AL + + L Q+SA +TL C+ + L AQ Q+H++ I+ Sbjct: 180 QLRELLNNFRLTVAPASLAHALEQAVAPLHQQSSAHITLACQF-SGQLAAQQQIHVVHIV 238 Query: 475 REAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAER 534 REA++NA++HA+A+EI+V P G + I+DNG+GI +EP+GH+GLNIM ERA R Sbjct: 239 REALVNAVRHASATEISVGSRPLPQGGIAITIKDNGVGIASLEEPDGHHGLNIMNERAAR 298 Query: 535 LGGTLTFSQPSGGGTLVSISF 555 L GTL + + GGT VS+ F Sbjct: 299 LNGTLLIERHAKGGTSVSLHF 319 >UniRef50_A8FUN8 Two-component sensor NarX n=3 Tax=Shewanella RepID=A8FUN8_SHESH Length = 591 Score = 226 bits (577), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 182/586 (31%), Positives = 290/586 (49%), Gaps = 46/586 (7%) Query: 1 MIVKRPVSASL----ARAFFYIVLLSILSTGIALLTLASSLR-DAEAINIAGSLRMQSYR 55 + + P S+S A F I++ L + I+ + +A SL DAE IN AGS+RMQ+ R Sbjct: 19 LYIDEPTSSSSLVASAGQFMAIIITLGLFSMISSILVAESLSGDAERINRAGSMRMQAIR 78 Query: 56 LG----YDLQSGSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNN 111 + D P L+ Q+F+ L + V ++ + ++W + Sbjct: 79 VSRANLIDQDGSRPILSQEIQVFENKLSHLFFGGIASTIDDPEVIAQHQKILSSW----D 134 Query: 112 RLSKGDLPWYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFT------LV 165 + + + + + +ID V LQ +E+K+ L + L GI +F+ LV Sbjct: 135 AIKQSPQTTSVEDFDRFTIKIDKLVNLLQMESEKKLSL---LRLIQGITLFSILIVSALV 191 Query: 166 FFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKL 225 F L R ++ PL QLV + G F+ +D NELGLL++T MS +L Sbjct: 192 LFKLNR---SLIIPLKQLVRVASEAGKGNFN-IKVDHIADNELGLLSRTIAHMSKQLENT 247 Query: 226 YRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNT---SQIDVHCFRHILQIVRDNEAAEY 282 Y+ E V++KT++L ++ + LEVLY+ + L+ QID + ++Q++ + + Sbjct: 248 YQEFEDRVDKKTQELTQSNQSLEVLYRAASNLSNYEYHQIDQKIIQELVQVLGYGKVSIV 307 Query: 283 LELNVGENWRISEGQPNPELPMQILPV-----TMQETVYGELHWQNSHVSSSEP----LL 333 L N + + N + Q + V + +G++ WQ + E LL Sbjct: 308 LCEKSINNLTFYKAKTNT-IDHQYMDVHQFVLEKRGRFFGDIVWQVPKHETPEDWQKQLL 366 Query: 334 NSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRS--- 390 +++ ++ + Q + +LL+ EERA IARELHDSLAQ LS+L++Q++LL R Sbjct: 367 QAMADIVATAIELEQKKNTENRLLIAEERAVIARELHDSLAQSLSFLKVQMSLLTRKMQK 426 Query: 391 -IPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSA 449 +PE+ + D Q LN AY QLRELLTTFRL L L +AL+ + + Sbjct: 427 GLPEEQVN--ETINDIKQGLNHAYLQLRELLTTFRLKLDDPSLENALQGTVAEFAEKCQH 484 Query: 450 KLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDN 509 + L+ +P L A ++H+LQIIRE++ N +HA AS V+ + D + I DN Sbjct: 485 AIELNFEIPQNYLTANQEIHVLQIIRESLSNVHRHAEASLAGVNLI-KEDDKIKLAIWDN 543 Query: 510 GIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 G G+ E +GH+GL IM+ERA+ L L F S GT V + F Sbjct: 544 GRGLPSNLEQQGHFGLGIMKERAKSLNSVLAFEPNSPSGTKVLLEF 589 >UniRef50_Q9F0Y0 Nitrate/nitrite sensor protein n=1 Tax=Pseudomonas fluorescens RepID=Q9F0Y0_PSEFL Length = 599 Score = 226 bits (576), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 189/588 (32%), Positives = 305/588 (51%), Gaps = 55/588 (9%) Query: 12 ARAFFYIVLLSILSTGIAL---LTLASSLRDAEAINIAGSLRMQSYRLGYDLQSGS---- 64 ARA ++L++IL+ +L L S DA AIN AGS+RM++Y L + L +G+ Sbjct: 11 ARAGLAVILIAILALASSLSAGLIAWFSQGDAAAINTAGSVRMETYHLSWKLAAGANDDI 70 Query: 65 PQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLE-MNNRLSKGDLPWYQA 123 P + A QQ L SP L + ++ Y L W + + + +GD ++Q+ Sbjct: 71 PAIIAS---LQQRLDSPALRAVLEDGPETSLHKSYRDLMQRWNQTLRPAIERGDSAFFQS 127 Query: 124 NINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFT---LVFFTLRRIRHQVVAPL 180 + +++V Q+D FV LQ +E K AI GI +F+ ++ L +++ VV PL Sbjct: 128 SASSFVEQLDQFVTLLQRQSEHKQGWQQAIQ---GIALFSTMIILLIGLYELQYGVVTPL 184 Query: 181 NQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDL 240 +LV A+QR G+F ++ +ELG LA +FN M+ + + +R+LEA V++KT +L Sbjct: 185 QELVDATQRFRRGEFQVR-VNHQSEDELGQLATSFNTMAETIEQSHRTLEAQVQQKTLNL 243 Query: 241 HEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDN----------------EAAEYLE 284 +A LE+LYQ S++L T Q + +++ + A L Sbjct: 244 QQANAALELLYQSSRSLATRQANAEGLDELIRRFQQRLPGLRLTLCLQGQLQAPAKHLLA 303 Query: 285 LNVGENWRI-------SEGQPNPELPMQILPVTMQETVYGEL--HWQNSHVSS--SEPLL 333 L+ + ++ S + N P Q ++ Q T GEL H+ + H + L+ Sbjct: 304 LHGAASRQVCASSDCASCHKHNAARP-QAFSISNQGTELGELKAHFVDGHAAQPWETALI 362 Query: 334 NSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQL----TLLKR 389 ++++++G L + ++ +LLL++ER IARELHDSLAQ LSY+++Q+ TL++R Sbjct: 363 QALANLIGTSLSLKRQREQDHRLLLLDERTIIARELHDSLAQALSYMKLQVSRMQTLMRR 422 Query: 390 SIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSA 449 P T +++ + + LN+AYRQLRELLTTFRL ++ L L++ + N+ Sbjct: 423 GEPVQ--TLETVTGELREGLNNAYRQLRELLTTFRLQIRDDGLVQELKDTAEEFSNRGDF 480 Query: 450 KLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDN 509 ++ L L A Q+H+LQI REA+ N ++HA+A E A + + I D+ Sbjct: 481 QVHLFIDTLAFELSASEQIHILQITREALSNCLRHAHA-ENAWLELRQEGETVRLSIEDD 539 Query: 510 GIGI-GEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFR 556 G G GE + E H+GLNIM ERA L G L GT + F+ Sbjct: 540 GRGFSGEVDQCE-HHGLNIMNERARSLHGQLQIHSRPPHGTRIQAHFQ 586 >UniRef50_B4S080 Signal transduction histidine kinase, nitrate/nitrite-specific n=1 Tax=Alteromonas macleodii 'Deep ecotype' RepID=B4S080_ALTMD Length = 588 Score = 226 bits (575), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 175/564 (31%), Positives = 274/564 (48%), Gaps = 51/564 (9%) Query: 39 DAEAINIAGSLRMQSYRLGYDLQSGSPQLNAHRQL---FQQALHSPVLTNLNVWYVPEAV 95 DA+A+N+AGSLRMQ+YR+ +Q + QL F L++ VL N + + Sbjct: 14 DAQAVNVAGSLRMQTYRIHSVMQDSPGDIETINQLVDEFDLTLNTGVLVNQQALWDNGDI 73 Query: 96 KTRYAHLNANWLEMNNRLSKGDLPWYQAN-------INNYVNQIDLFVLALQHYAERKML 148 +A + NW E +L + +L + N V I+L V+A Q YAE + Sbjct: 74 AKHHAIVANNWNEQVKQLIQTNLASPSNSNTSSLEVFNKLVEDIELLVVAYQKYAE---I 130 Query: 149 LVVAISLAGGIGIFT---LVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLP 205 + I L + +F+ L+ + + + PL++L + +++I G F + +T Sbjct: 131 NIANIRLVQSLALFSTLILIAIAMMIVHRHIEQPLSKLTSVARQIGQGDFTARAEETG-K 189 Query: 206 NELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVH 265 EL LLA+T N+MS L++ LE ++ KTR L + + LE+L+Q S+ LN + Sbjct: 190 GELALLARTINKMSGSLYRSKSQLEEQIKRKTRKLTRSNQSLELLFQVSRRLNEVEPGSA 249 Query: 266 CFRHILQIVRDNEAAEYLELNVG--------ENWRISEGQPNPELPMQIL---------- 307 F+ +L + D + L+L + E+ SE + Q+ Sbjct: 250 DFQPLLNKLADVTGVKDLDLCIMTAQGTGPYEHLMSSEKTIPDKCQQQLCHDCTEHDSLF 309 Query: 308 -PVTMQ---ETVYGELHWQNSHVSSSE---------PLLNSVSSMLGRGLYFNQAQKHFQ 354 PV Q + G+ H+ VS E L +++ + GL + + Sbjct: 310 PPVNGQMKYQLNIGDQHYGVLVVSLDEGSILEDWQHQLFEAIAEQVANGLSMKHQNEQRR 369 Query: 355 QLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQ--SIMADFSQALNDA 412 ++ LM ER IARELHDSLAQ LSYL+IQ+T L+R +++A Q ++ + L A Sbjct: 370 RIALMNERTVIARELHDSLAQALSYLKIQVTRLQRLQQKESAQEQIDQVIDELKNGLGAA 429 Query: 413 YRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSA-KLTLDCRLPTLALDAQMQVHLL 471 Y +LRELLTTFRL L + +AL + + LQN++ TL+ + + Q ++HLL Sbjct: 430 YSELRELLTTFRLKLDGQGIKAALEQTISQLQNRSDDFNFTLNYHVSNIPFTPQEEIHLL 489 Query: 472 QIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRER 531 QI REA NA H+ I +S + + ++DNGIGI E HYGL IM+ER Sbjct: 490 QIAREATQNAFYHSQGFNIDISITSNSLSEVILTVKDNGIGIPEDPNKLNHYGLAIMKER 549 Query: 532 AERLGGTLTFSQPSGGGTLVSISF 555 + L G L+ + GT V SF Sbjct: 550 SRNLDGELSVKRNDERGTTVMFSF 573 >UniRef50_A4VHY8 Two-component sensor NarX n=3 Tax=Pseudomonas RepID=A4VHY8_PSEU5 Length = 658 Score = 224 bits (570), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 199/594 (33%), Positives = 288/594 (48%), Gaps = 60/594 (10%) Query: 14 AFFYIVLLSILSTGIALLTLASSLR-DAEAINIAGSLRMQSYRLGYDLQSGSPQLNAHR- 71 AF I+ S++S +A L LA +L DAEAIN AGSLRMQ+YRL + + G L R Sbjct: 41 AFVVIIGFSLVSM-LASLYLADALEGDAEAINQAGSLRMQAYRLAFTAEHGPQALLEERI 99 Query: 72 QLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPW---YQANINNY 128 + ++ L S L + + + + + +W E L P Y+ + Sbjct: 100 DILERTLRSASLRSALHRHGDTPLPGLHGGVLQHWQERMRPLLDAQPPRLDDYRREAPEF 159 Query: 129 VNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVA-PLNQLVTAS 187 V+++D+FV LQ +E K+ ++ A+ AG + I L+ F L H +A PL L + Sbjct: 160 VSELDVFVRTLQEASEGKLGVIRALQ-AGTLFIIVLIAFVLIYGLHNNLATPLRSLTKMA 218 Query: 188 QRIEHGQFDSP---PLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAK 244 + I G F P DT EL LLA+T NQMS EL LY +E V++KT L + Sbjct: 219 RDIGKGDFSGRVEIPGDT----ELSLLARTLNQMSQELAGLYAEMEQKVDDKTAALTRSN 274 Query: 245 RRLEVLYQCSQALNTSQIDVHCFRHIL----QIVRD--------NEAAEYLELNVGENWR 292 L++L+ ++ L + D L Q V D N +AE G + Sbjct: 275 ATLQLLFNSARMLYSQPDDPSLMMGSLLTKVQEVLDTGPISLCLNRSAE-----AGSHTA 329 Query: 293 ISEGQPNP----ELP-MQILPV-------TMQETVYGELHWQNSHVSS-------SEPL- 332 ++ P +LP ++ PV + +E V EL + S EPL Sbjct: 330 MTSSDLQPPDYCKLPQCEVCPVNQSGRLPSGEELVTFELRSGQDDLGSLRVAHPAGEPLE 389 Query: 333 ------LNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTL 386 L +++ + L Q + +L LMEERA IARELHDSLAQ LS ++QL Sbjct: 390 SWQTLLLTTLADLFAASLSLAQLGQKQARLALMEERAVIARELHDSLAQALSAQKLQLAR 449 Query: 387 LKRSIPEDNATAQ--SIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQ 444 LKR + +++ AQ + + LN AYRQLRELLTTFR+ + + L AL+ ++ Sbjct: 450 LKRLMQKESGQAQLDDSVQQIDRGLNSAYRQLRELLTTFRIKVNEPGLKPALQATIEEFG 509 Query: 445 NQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTV 504 + + D +L L +VH LQIIREA+ N +KHA A + G V Sbjct: 510 ANSGLHIESDFQLDHCPLTPNEEVHCLQIIREALSNVVKHAEAEHCWLRLTQDGIGTINV 569 Query: 505 YIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSA 558 I D+GIGI ++ GHYGL I+RERA L G+++ GGGT V + F A Sbjct: 570 EIEDDGIGIRPEEQRTGHYGLIILRERANSLNGSISIGLRPGGGTRVHLRFPPA 623 >UniRef50_A4TJU9 Nitrate/nitrite sensor protein n=29 Tax=Enterobacteriaceae RepID=A4TJU9_YERPP Length = 593 Score = 218 bits (555), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 182/557 (32%), Positives = 273/557 (49%), Gaps = 51/557 (9%) Query: 39 DAEAINIAGSLRMQSYRLGYDLQSGSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTR 98 +A AIN AGSLRMQSYRL + S +L+ L Q +L + E + + Sbjct: 40 NAHAINQAGSLRMQSYRLLSMIPLDSNELSYLVALEQ----DKTSHDLQQALLREGLMGQ 95 Query: 99 YAHLNANWLE-MNNRLSKGDLP-WYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLA 156 Y + W + + +L + P A++ ++V+Q+D VLA+ H E+++L V I L Sbjct: 96 YQQIERYWQDTLKPQLQQAKHPDEVAASVADFVHQLDALVLAIDHKTEQRLLQVTLIPLV 155 Query: 157 GGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFN 216 + +L+ + +R +++ P +L++ + I G F +E+G+L N Sbjct: 156 FSLLTLSLLLAMIYYLRRRLLRPWLKLISMANAIGRGDFSQRYTLDYQRDEMGMLGTALN 215 Query: 217 QMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQ--------------- 261 +MS EL +Y LE V KT DL + + L LY S+ L+T Q Sbjct: 216 RMSQELSLIYGDLEQRVVNKTADLQQKNQVLAFLYHSSRQLHTHQPLSERLAPVIEQLQA 275 Query: 262 -----------IDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPM------ 304 + H +R V N AEYL + +N S P P+ Sbjct: 276 LTTLENVQICLYENHLYR---DHVNHNADAEYL---MPKNRPASLTISGPVRPISHPELW 329 Query: 305 QILPVTMQETV--YGEL----HWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLL 358 Q L ++ + + YG L N S + L++ + L L KH QQLLL Sbjct: 330 QSLSWSLSDKLGQYGLLLAKQPLDNPLNSDQQQLVDMLVEQLTSTLALESQAKHQQQLLL 389 Query: 359 MEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRE 418 MEER+ IARELHDS+AQ LS L+IQ++ L+ P+ + ++ LN AYRQLRE Sbjct: 390 MEERSAIARELHDSIAQSLSCLKIQISCLQMQTPDLPENSNLLIKQMRDELNIAYRQLRE 449 Query: 419 LLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAV 478 LLTTFRL L +A L +AL+ +++ + +T +LP + +H++ I+REA+ Sbjct: 450 LLTTFRLKLNEATLEAALQALVNEFSERAGLSITFKYQLPPDQVPNHQAIHMVNIVREAL 509 Query: 479 LNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGT 538 N KHA ASE V+ V G+ + I DNG GIG+ E HYGL IM++RA L G Sbjct: 510 NNIYKHARASEATVN-VHLEQGDVVMSITDNGCGIGQASEQPNHYGLMIMQDRANSLHGH 568 Query: 539 LTFSQPSGGGTLVSISF 555 + +Q GGGT V + F Sbjct: 569 CSINQKEGGGTEVRVQF 585 >UniRef50_Q5P3L3 Nitrate/nitrite TWO-component sensor NARX n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5P3L3_AZOSE Length = 648 Score = 218 bits (554), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 185/608 (30%), Positives = 281/608 (46%), Gaps = 78/608 (12%) Query: 14 AFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGY-------DLQSGSPQ 66 AF + +S++ G ++ + + A+N AG LR ++R D ++G Sbjct: 35 AFVAVAFISLVGIGASVAIVETVQDSGSAVNAAGGLRRLAHRAASVALAAALDGRTGHAD 94 Query: 67 LNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANW--------LEMNNRLSKG-D 117 + A F+ L L + V + Y ++ +W L R S+ D Sbjct: 95 VAAAIGAFEAELGHATLEKVLEREPDSVVASIYRGIHRDWYVNLKPRLLGAPERASESPD 154 Query: 118 LPWYQ---ANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFT-LRRIR 173 + +Y+ A+++ + QID V L+ E L + I+LA +G+ +V L IR Sbjct: 155 VLFYENLLADVDAFTAQIDALVAVLERETETG-LEQLRITLAVALGMVMIVMIAALCVIR 213 Query: 174 HQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASV 233 +V PL +L + RI G F + T +ELG + FN M+ EL +YR LE V Sbjct: 214 RRVFRPLTELHACAARIAGGDFRAHSRYTGR-DELGRVGSAFNAMADELSTVYRDLEQRV 272 Query: 234 EEKTRDLHEAKRRLEVLYQC----SQALNTSQIDVHCFRHILQIV-----------RDNE 278 E+KT DL + R LE+LY A + + V + + Q++ + Sbjct: 273 EQKTADLTRSNRALELLYHVIARLYHAPASPETYVETLKDLEQVLGLKGSFVCVQPKHGG 332 Query: 279 AAEYLELNVGENWRISEGQ------PNPELPMQ----------ILPVTMQETVYGELH-- 320 A L +G+ S + P +P ++P+ + +YG + Sbjct: 333 VATVLSTTMGDCPSRSGSEEECTHCPGRAMPWSYRREDGFDVFLVPLRDADHLYGMMRLA 392 Query: 321 ---------WQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHD 371 WQ++ L+ +VS +G L + + + L L EER+ IARELHD Sbjct: 393 LLPGERLRAWQHT-------LVEAVSRHMGIALGISHQSERERLLALQEERSIIARELHD 445 Query: 372 SLAQVLSYLRIQLTLLKRSI--PEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQ 429 SLAQ LSY++IQ +LL ++ PE A I+AD +N AYRQLRELL+TFRL + + Sbjct: 446 SLAQSLSYMKIQASLLSSALQRPERRDDASDILADMKGGINAAYRQLRELLSTFRLQM-E 504 Query: 430 ADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASE 489 D L ++ ++ + L+ RL L+ ++H+L IIREA+ NA +HA AS Sbjct: 505 GDFARLLGSTVEEYAGRSGMPIDLEIRLGGRHLNPNQEIHVLHIIREALSNATRHARASS 564 Query: 490 IAVSCVTAPDGNHTVYIRDNGIGI--GEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGG 547 I V PDG V I D+G GI EP HYGL IM ERA LGG L G Sbjct: 565 IRVGLFGHPDGVR-VIIEDDGKGIRAAAATEPH-HYGLAIMGERARGLGGVLEIVPRPDG 622 Query: 548 GTLVSISF 555 GT V++ F Sbjct: 623 GTRVAVRF 630 >UniRef50_A1U593 Integral membrane sensor signal transduction histidine kinase n=2 Tax=Marinobacter RepID=A1U593_MARAV Length = 618 Score = 218 bits (554), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 179/606 (29%), Positives = 283/606 (46%), Gaps = 54/606 (8%) Query: 1 MIVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDL 60 M + P+ LA IVL +I+S L S +A AIN+AGSLRM +++L Sbjct: 1 MTSRSPLVNRLAVVIGAIVLTAIVSMATTLAVSNSIEGNATAINLAGSLRMGAFQLAARS 60 Query: 61 QSGSPQ-----LNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSK 115 + PQ LN + ++ L P + + +Y + +W + + Sbjct: 61 ATDDPQDSTGTLNQRIEAYEDRLRDPAIIRSIPRTDDHPLAEQYKTVEYSWANQLRQSLE 120 Query: 116 GDLPWYQ------ANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTL 169 P A + Y ++DL V L+ E ++ L+ I + + +V Sbjct: 121 SHQPGAPLSAEMIAAVEEYTGEVDLLVSMLERRTEARIDLLHLIQIISMVFSVLIVLALF 180 Query: 170 RRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSL 229 ++++++ PL +LV + + F S + +EL L + F+QM+SEL Y L Sbjct: 181 LDLKNRILRPLRKLVGIATAVGEQDF-SHKANLKGSDELAQLGQAFDQMTSELALTYYEL 239 Query: 230 EASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQ-------------IVRD 276 E+ +KT +L + L+V++ S+ L + +LQ + D Sbjct: 240 ESRARQKTEELEISHAALQVMHSASRGLFANHDLCSGAIPMLQDLEQLLGIGPIRLFLHD 299 Query: 277 NEAAEYLELNVGE-------------NWRISEGQPNPELPMQ-------ILPVTMQETVY 316 E+AE +E N + + E+P++ +LP+ + Sbjct: 300 KESAEPVEAITTATPKRPFYCRDHHCNACLVTPEVYDEMPLENNDGRRLLLPIRTPGQLL 359 Query: 317 GELH-W---QNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDS 372 G L W + +S LL +++ L ++ + QQL L EER IARELHDS Sbjct: 360 GTLEVWYPAEKGLPETSRRLLETLTDQLATAIFLEKQITEEQQLTLAEERTVIARELHDS 419 Query: 373 LAQVLSYLRIQLTLLKR-SIP-EDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQA 430 LAQ LSYL++Q+T L+R +I E I+ + S LN AYRQLRELL TFRL L Sbjct: 420 LAQSLSYLKMQVTRLRRLNIDGEQKPIHDDILDELSTGLNSAYRQLRELLATFRLKLDTP 479 Query: 431 DLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEI 490 DL +ALR+ +D + + + LP L ++H LQIIRE + NA+KHA+A++I Sbjct: 480 DLATALRKTIDEFSERLGKPVAFEYNLPPQTLSPNEEIHTLQIIREGLANAVKHADATDI 539 Query: 491 AVSCV-TAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGT 549 AV V +P + I+DNG G+ +P HYGL IM++RA LGG + GG Sbjct: 540 AVKVVFDSPQVRAS--IQDNGKGLPGGDQPVNHYGLIIMQDRARTLGGKVNVRNRDEGGV 597 Query: 550 LVSISF 555 V+++F Sbjct: 598 EVALTF 603 >UniRef50_Q3SJ17 Periplasmic Sensor Signal Transduction Histidine Kinase n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SJ17_THIDA Length = 644 Score = 216 bits (551), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 186/609 (30%), Positives = 298/609 (48%), Gaps = 75/609 (12%) Query: 11 LARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGY---DLQSGSPQL 67 L F I +L++ S + + + EAIN+AGSLRMQS+R+ LQS Sbjct: 29 LGGMFVAITVLAVTSMSTSWMVAETIQGSGEAINLAGSLRMQSWRMAAIYQRLQSDGATE 88 Query: 68 NAHR-----QLFQQALHS-PVLTNLN------VWYVPEAVKTRYAHLNANWLEMN---NR 112 +A F+ L + P+L L +W+V V+ + + L++ R Sbjct: 89 DAEDLGEAIARFEADLKAAPILAVLPSDETTPLWHVYRQVENDWRTVVKPGLQVTPAAGR 148 Query: 113 LSKG----DLPWYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFT 168 ++G D+P + A+IN+ V QI + AE K+L++ I A I +V Sbjct: 149 PARGSVLDDIPAFVAHINDLVKQI-------EDAAEAKILVMRVILGAAVIATMLVVALA 201 Query: 169 LRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRS 228 + + + +V PL L+ + +I G + D +E+G L + FN M+ +L LY++ Sbjct: 202 IYLVNNILVYPLRGLLGLADQIGQGNL-AVRNDLTGEDEIGRLGQAFNHMAEDLSMLYQN 260 Query: 229 LEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRD-----NEAAEYL 283 LEA VEEKT +L A R LE+LY L I + +L+ + + + A + Sbjct: 261 LEARVEEKTAELTIANRSLELLYHSIARLYNGPIAPRTYEILLKDLENVLGLGHGLACLV 320 Query: 284 ELNVGENWRI--SEGQPNPEL--PMQI-------------------------LPVTMQET 314 E + R+ S P PE P + LP+ E Sbjct: 321 EGDGATRGRVIASTLPPLPEGADPCSVMSCAECLARPALAVHPLGDGRRVLSLPLNDTEQ 380 Query: 315 VYGELHWQ----NSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELH 370 +YG L + V LL ++S +G + + + ++L L++ERA +AR+LH Sbjct: 381 LYGVLQLEMPPGKELVQWQSQLLEALSRHIGIAIGTARRTEQSRRLSLLDERAALARDLH 440 Query: 371 DSLAQVLSYLRIQLTLLKRSIPEDNATAQS--IMADFSQALNDAYRQLRELLTTFRLTLQ 428 DSLAQ L+Y++IQ++ LK + A +++ ++A+ + LN AYRQLRELLTTFRL ++ Sbjct: 441 DSLAQSLAYMKIQVSRLKPLVEGSGAGSEAGDVLAELREGLNSAYRQLRELLTTFRLRIE 500 Query: 429 QADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANA- 487 L +AL+ + N+ +TL L L ++H LQI+REA+ N + HA A Sbjct: 501 GEGLGAALQTTVTEFSNRGGIPITLVVHLAGCKLTPNEEIHALQIVREALSNVLNHAQAR 560 Query: 488 -SEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSG 546 +E++VSC + DG+ + + D+GIGI HYG+ IM ERA+ LGG L+ + Sbjct: 561 QAEVSVSCNS--DGSVSATVTDDGIGIHGTARAH-HYGMTIMEERAKNLGGRLSVENLAA 617 Query: 547 GGTLVSISF 555 GT V++ F Sbjct: 618 RGTRVALHF 626 >UniRef50_Q8VUK2 Putative nitrate/nitrite sensor protein n=1 Tax=Halomonas halodenitrificans RepID=Q8VUK2_PARHA Length = 644 Score = 214 bits (544), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 187/611 (30%), Positives = 293/611 (47%), Gaps = 77/611 (12%) Query: 9 ASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYR-----LGYDLQSG 63 A + + I ++++S + + S DA AIN+AGSLRM +++ L YDL Sbjct: 10 ARIVASLLAISAMALVSIAVTMTVANDSRGDAAAINMAGSLRMNTHQILTALLRYDLHPD 69 Query: 64 SPQLNAHRQL---FQQALHSPVLTNLNVWYVPEAVKTRYAHLNANW----LEMNNRLSKG 116 + + L F+ L SP LT+ A++ ++ L + W L NR Sbjct: 70 AAHDDGVAALVERFETRLASPELTDALPDAADHALRRQHRELLSRWTHDILPAINRARAA 129 Query: 117 D-------LPWYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTL 169 D P ++A V ID V L+ +E K+ L++ + +V L Sbjct: 130 DDRQGPDPAPAFEA----LVGDIDALVTLLERNSESKIQLLIILQFLFLALTVVVVAIAL 185 Query: 170 RRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLP--NELGLLAKTFNQMSSELHKLYR 227 IRH +V PL L+ ++ F T+ +EL LL +TF+ M+ EL Y Sbjct: 186 YDIRHNLVTPLRHLLVLAREAARRNFG---YRTHFRGNDELALLGRTFDNMAEELATSYA 242 Query: 228 SLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHC------FRHILQIVRDNEAAE 281 LEA K +L + R ++V++ S+AL D+ C R + Q++ + Sbjct: 243 ELEAHASLKQAELERSNRAMQVMHDGSRALYGGGNDL-CASAAPMLRQLEQLL--DVGPI 299 Query: 282 YLELNVGENWR----ISEGQPN-PEL--------------PMQI----------LPVTMQ 312 L LN + R ++ P+ PE P+++ LPV++ Sbjct: 300 RLSLNDPHDDRQIPILATHSPHRPEYCRDHECHACLIDPQPLKLEQAQQGECLLLPVSVG 359 Query: 313 ETVYGEL---HWQNSHVSSS-EPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARE 368 E + G L H ++ +S S LLN+++ L +Y + + QQ+ LM ER IARE Sbjct: 360 ELMLGTLEVWHSRSQPLSDSVRRLLNALADQLATAVYLQRRIEEQQQVTLMNERTIIARE 419 Query: 369 LHDSLAQVLSYLRIQLTLLKR----SIPEDNATAQSIMADFSQALNDAYRQLRELLTTFR 424 LHDSLAQ LSYL++Q+ L+R P + A + + L+ AYRQLRELLTTFR Sbjct: 420 LHDSLAQSLSYLKMQVARLERMQQKEAPRERQAA--VFDELRTGLDSAYRQLRELLTTFR 477 Query: 425 LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKH 484 L L+ L SAL + + + L+ +P L+ ++H+LQ++REA+ N +KH Sbjct: 478 LKLEGPGLASALHQTAREFGKRLGYPVILEVDVPPHLLNPNEEIHVLQVVREALANVLKH 537 Query: 485 ANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQP 544 ANA A++ + + V I D+GIG+ + P HYGL IMR+RA+ LGG +T Sbjct: 538 ANAHWAAIT-INFQEARLHVVIEDDGIGLDDDSSPPMHYGLVIMRDRADTLGGEMTLHNR 596 Query: 545 SGGGTLVSISF 555 GGGT +++ F Sbjct: 597 PGGGTRLALVF 607 >UniRef50_Q4FU45 Signal transduction histidine kinase sensor n=2 Tax=Moraxellaceae RepID=Q4FU45_PSYA2 Length = 707 Score = 201 bits (511), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 179/661 (27%), Positives = 303/661 (45%), Gaps = 123/661 (18%) Query: 14 AFFYIVLLSILST-GIALLTLASSLRDAEAINIAGSLRMQSYRLGYDL------------ 60 A F I +L +ST G +L S DA+AIN AGS+RM +YR+ + L Sbjct: 36 AIFTISILCFISTLGGGMLAWVSE-TDAQAINTAGSIRMATYRISFQLATNFSENNPFDL 94 Query: 61 ------------QSGSPQLNAHRQLFQQALHSPVLTNLN--VWYVPEAVKTRYAHL---- 102 + G+ + ++ +Q SP+ + + E +++R A L Sbjct: 95 NIGLKKNDLEGKKEGTENVKGENRIGEQDKLSPIRKEKTEEISTLIEDMESRLAELHDYQ 154 Query: 103 --NANWLE-MNNRLSKGDLPWYQ----ANIN-----------NYVNQIDLFVLALQHYAE 144 NAN E +NN+L + + W++ A ++ Y+ +D FV LQ+ E Sbjct: 155 LANANDNEGINNQLKQIESQWFRELKPALLSQDAQKFYIVSFKYIEDVDSFVNELQYRNE 214 Query: 145 RKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNL 204 ++ + + + ++ ++R+R V+ P+ QL+ A+ + + G+ ++ + + Sbjct: 215 QRQTWQQILQIVSLVLTVIIMLVGMQRLRQNVLIPVQQLIKANYKFKQGKRNTK-VSISG 273 Query: 205 PNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDV 264 E L +FN M+S + RSLE+ V+ KT+ L +A + L + Y S++L TSQ+ + Sbjct: 274 YTEFNALGDSFNDMASTIETHQRSLESEVQIKTQHLVKANQVLSLFYDFSKSLTTSQVSL 333 Query: 265 HCFRHILQIVRDNEAAEYLELNV--------GENWRISEGQPNPELPMQI---------- 306 +R I + +LE + +N I G+ EL ++ Sbjct: 334 --YRLDTLITDFGKILPHLEFTLCIQNKFINNKNAIILHGEKMKELCKKLNCDNCLTKEG 391 Query: 307 -----LPVTMQETVYGELH------------------------------------WQNSH 325 P+ Q+ +GEL + S Sbjct: 392 VYTKSYPIAHQKVEFGELKVRPKSVLLINSTLFPNNNDGNTPSSQRIQIAKEGRTFFESE 451 Query: 326 VSSSEPLLN-----SVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYL 380 + S L N ++++++ L + ++ QL+L EER+TIARELHDSLAQ LSYL Sbjct: 452 IGSELDLENNELIVALTNLISTALSLRKQRQQEHQLILFEERSTIARELHDSLAQSLSYL 511 Query: 381 RIQLTLLKR-----SIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSA 435 +IQ+++L+R S ++ A+ + + L+ AY+QLR+LL TFRLT+ + A Sbjct: 512 KIQISVLERHLKNGSDEQNEASVRQHIDQIKAGLSSAYQQLRDLLITFRLTIDNDNFDEA 571 Query: 436 LREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCV 495 L E + + ++T+ R+ TL L A Q+ L+QI REA+ N +HA A + + Sbjct: 572 LHEAANEFALKGKFEITVSNRVMTLNLSATEQIDLIQIAREALSNISRHAQAENVEIDLG 631 Query: 496 TAPDGNHTVY-IRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSIS 554 + + V I DNG+GI + H+GL IM+ERA LGG L S GT ++ Sbjct: 632 YDDEDKYIVMTIVDNGVGISGTVDQTQHHGLMIMKERAHNLGGELIVSNNESQGTTITAK 691 Query: 555 F 555 F Sbjct: 692 F 692 >UniRef50_P0AFA3 Nitrate/nitrite sensor protein narX n=127 Tax=Gammaproteobacteria RepID=NARX_ECO57 Length = 598 Score = 201 bits (510), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 173/588 (29%), Positives = 279/588 (47%), Gaps = 69/588 (11%) Query: 18 IVLLSILSTGIALLTLASS-------LRDAEAINIAGSLRMQSYRLGYDLQSGSPQLNAH 70 + L+ +LST I L +A S A AIN AGSLRMQSYRL + P Sbjct: 15 VALIVLLSTAIGLAGMAVSGWLVQGVQGSAHAINKAGSLRMQSYRL----LAAVPLSEKD 70 Query: 71 RQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANW--------LEMNNRLSKGDLPWYQ 122 + L ++ + L + + L W + NR + Sbjct: 71 KPLIKEMEQTAFSAELTRAAERDGQLAQLQGLQDYWRNELIPALMRAQNRET------VS 124 Query: 123 ANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQ 182 A+++ +V +D V E ++ VV + + + L+ FT+ +R +++ P Q Sbjct: 125 ADVSQFVAGLDQLVSGFDRTTEMRIETVVLVHRVMAVFMALLLVFTIIWLRARLLQPWRQ 184 Query: 183 LVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHE 242 L+ + + H F + + + NE+ +L N MS+EL + Y LE V+EKT L Sbjct: 185 LLAMASAVSHRDF-TQRANISGRNEMAMLGTALNNMSAELAESYAVLEQRVQEKTAGLEH 243 Query: 243 AKRRLEVLYQCSQALNTSQIDVHCFRHILQ------IVRDNEAAEYLELNVGENWRISEG 296 + L L+Q ++ L++ +L ++RD E Y + + EN + Sbjct: 244 KNQILSFLWQANRRLHSRAPLCERLSPVLNGLQNLTLLRDIELRVY-DTDDEENHQEFTC 302 Query: 297 QPNPEL--------PMQILPVTMQETVYGELHW-----------------QNSHVS-SSE 330 QP+ P +LPV + T L W Q H+S + Sbjct: 303 QPDMTCDDKGCQLCPRGVLPVGDRGTT---LKWRLADSHTQYGILLATLPQGRHLSHDQQ 359 Query: 331 PLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLK-- 388 L++++ L L ++ Q+ QQL++MEERATIARELHDS+AQ LS +++Q++ L+ Sbjct: 360 QLVDTLVEQLTATLALDRHQERQQQLIVMEERATIARELHDSIAQSLSCMKMQVSCLQMQ 419 Query: 389 -RSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQT 447 ++PE +++ +++ LN ++ QLRELLTTFRL L + L AL + + Sbjct: 420 GDALPE---SSRELLSQIRNELNASWAQLRELLTTFRLQLTEPGLRPALEASCEEYSAKF 476 Query: 448 SAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIR 507 + LD +LP + + +HLLQI REA+ NA+KH+ ASE+ V+ V D + ++ Sbjct: 477 GFPVKLDYQLPPRLVPSHQAIHLLQIAREALSNALKHSQASEVVVT-VAQNDNQVKLTVQ 535 Query: 508 DNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 DNG G+ E HYG+ IMR+RA+ L G + GGT V ++F Sbjct: 536 DNGCGVPENAIRSNHYGMIIMRDRAQSLRGDCRVRRRESGGTEVVVTF 583 >UniRef50_B4EWG1 Nitrate/nitrite teo-component system, sensor kinase n=8 Tax=Enterobacteriaceae RepID=B4EWG1_PROMH Length = 609 Score = 198 bits (504), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 180/587 (30%), Positives = 280/587 (47%), Gaps = 55/587 (9%) Query: 11 LARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQSGSPQLNAH 70 +A L ++ I+ + S +A AIN +GSLRMQSYRL S P + H Sbjct: 18 IAILMLLFTLFGVVGMAISNHIILSVQGNAHAINKSGSLRMQSYRL----LSALPLDDKH 73 Query: 71 RQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLE-MNNRLSKGDLPW-YQANINNY 128 R Q+ + L +++++Y L W E + LS P + + + Sbjct: 74 RDYLQELENDLDSKELRQVLSTSSLQSQYVQLTHYWKETLKPTLSAAKQPNDAKQEVIFF 133 Query: 129 VNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQ 188 V+Q+D V ++ E+K+ LV L L+F ++ R +++ P QL++ + Sbjct: 134 VSQLDTLVSSIDQLTEQKIRLVAYTQLIFTALTLLLLFGSVWHFRRRLLLPWQQLMSMAN 193 Query: 189 RIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLE 248 I HG F + +E+ L N MS EL LY LE V EKT DL + + L Sbjct: 194 SIGHGDFSTRFRPRPHHDEIATLGIALNTMSEELSTLYSELEQRVIEKTHDLQQKNKVLS 253 Query: 249 VLYQCSQALNTSQIDVHCFRHIL--------------QIVRDNEAAEYLELNVGENWRIS 294 LY SQ L++ R IL ++ DN+ + E+++ + R Sbjct: 254 YLYHSSQQLHSQAPLCARLRQILAELQHIIPDSYLQIRLYEDNQHTLFNEISLAPSSR-P 312 Query: 295 EGQPNPELPMQILPVTMQETVYGEL-HWQ-----------------NSHVSSSEP----- 331 E P P+ + + L HW+ NS ++ + Sbjct: 313 EYCPTPDCERCNEDANITTPLNNRLLHWELTDQIHRYGLFVMQLPENSVLTDEQNNLMLL 372 Query: 332 LLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLK--- 388 L +S+ML Q + QQLLLM+ER+ IARELHDS+AQ LS L++Q++ L+ Sbjct: 373 LTKQISAMLA----MEQQNEQQQQLLLMDERSAIARELHDSIAQSLSCLKMQVSYLQMQS 428 Query: 389 RSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTS 448 ++P++ Q ++ + + LN AYRQLRELLTTFRL L + L +AL L+ + Sbjct: 429 ETLPDN---CQKLLKEMREELNVAYRQLRELLTTFRLKLTEPGLLAALENTLNEFNQRLG 485 Query: 449 AKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRD 508 + D +LP +++ +H++QI+REA+ N ++HANA+ V+ +T +G + I D Sbjct: 486 FAIHFDYQLPAKCVNSHQSIHVVQIVREALNNILQHANANWAEVA-LTLNNGIVELQIND 544 Query: 509 NGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 NG GI E HYGL IMRERA L G+ + GGT V ++F Sbjct: 545 NGEGITPNPEKINHYGLIIMRERANSLNGSYSIRVRKEGGTQVFVTF 591 >UniRef50_B4TXT2 Nitrate/nitrite sensor protein NarX n=69 Tax=Enterobacteriaceae RepID=B4TXT2_SALSV Length = 598 Score = 193 bits (490), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 176/586 (30%), Positives = 283/586 (48%), Gaps = 65/586 (11%) Query: 18 IVLLSILSTGIALLTLASS-------LRDAEAINIAGSLRMQSYRLGYDLQSGSPQLNAH 70 + L+ +LST I + +A S A AIN AGSLRMQSYRL + L+A Sbjct: 15 LALIVMLSTAIGVAGMAVSGWLVQGVQGSAHAINKAGSLRMQSYRL-----LAAVPLDAK 69 Query: 71 RQLF----QQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKG-----DLPWY 121 Q +Q SP LT + + + L W +N LS G + Sbjct: 70 DQKLLDEMEQTAFSPELTRA---AERDGQQKQLKALQDYW---HNELSPGLQHAQNAHAV 123 Query: 122 QANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLN 181 ++ +V +D V + H E ++ VV + I + L+ FT+ +R +++ P Sbjct: 124 AEDVTRFVAGLDRLVTSFDHTTELRIERVVLVHRVMAIFMALLLVFTIIWLRVRLLQPWK 183 Query: 182 QLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLH 241 QL++ ++ + F + + + NE+ L N MS EL + Y LE V+EKT L Sbjct: 184 QLLSMARAVSQRDF-TQRANISGRNEMAALGSALNNMSEELAESYAVLEQRVQEKTAGLE 242 Query: 242 EAKRRLEVLYQCSQAL------------------NTSQI-DVHCFRHILQIVRDNEAAEY 282 + L L+Q ++ L N +Q+ D+ + L+ DN Sbjct: 243 HKNQILSFLWQANRRLHSPAPLCERLSPVLNGLQNLTQLHDIELRVYDLED-EDNHQEFT 301 Query: 283 LELNVGENWRISEGQPNPELPMQILPVTMQ------ETVYGELHWQ---NSHVS-SSEPL 332 + ++ + + P LPM T++ T YG L H+S + L Sbjct: 302 CQSDISCDDKGCHLCPRSALPMINGGTTLKWRLTDSHTQYGILLATLPYGRHLSHDQQQL 361 Query: 333 LNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRS-- 390 ++++ L L ++ Q+ QQL++MEERATIARELHDS+AQ LS +++Q++ L+ Sbjct: 362 VDTLVEQLTATLALDRHQERQQQLIVMEERATIARELHDSIAQSLSCMKMQVSCLQMQGD 421 Query: 391 -IPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSA 449 +PE +++ +++ LN ++ QLRELLTTFRL L + L AL + Sbjct: 422 VLPE---SSRVLLSQIRNELNCSWAQLRELLTTFRLQLTEPGLRPALEASCQEFSARFGF 478 Query: 450 KLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDN 509 + LD +LP + + +HLLQI REA+ NA+KH++A ++ V+ VT + ++DN Sbjct: 479 TVKLDYQLPPRLVPSHQAIHLLQIAREALSNALKHSHADDVVVT-VTQCGKQVKLKVQDN 537 Query: 510 GIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 G G+ E E HYG+ IMR+RA+ L G + GGT V+++F Sbjct: 538 GCGVPENAERSNHYGMIIMRDRAQSLRGDCQVRRRETGGTEVTVTF 583 >UniRef50_B2Q6G3 Putative uncharacterized protein n=3 Tax=Enterobacteriaceae RepID=B2Q6G3_PROST Length = 586 Score = 189 bits (480), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 183/580 (31%), Positives = 294/580 (50%), Gaps = 63/580 (10%) Query: 18 IVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQSGSPQLNAHRQLFQQA 77 I +L I+ I+ + S +A AIN +GSLRMQSYRL S P LN H + + Sbjct: 23 IAILGIIGMTISNRMIISVQGNAHAINKSGSLRMQSYRL----LSLIP-LNDHTKEYLDI 77 Query: 78 LHSPVLTNLNVWYVPEA--VKTRYAHLNANWLE-----MNNRLSKGDLPWYQANINNYVN 130 L + L++L + V +A + +++ L+ WL+ ++ S D + + ++VN Sbjct: 78 LEND-LSSLELTQVVKAEDLTEKFSELHTFWLKTLRPALSEANSASDARY---EVISFVN 133 Query: 131 QIDLFVLALQHYAERKMLLVVAISLAGGIG-IFTLVFFTLRRIRHQVVAPLNQLVTASQR 189 +D V + ERK + VA++ IG +F L+ T+ +R ++ P +L++ + Sbjct: 134 MLDELVHDIDEKTERK-IAYVAMTQMIFIGLVFLLLMVTIWHLRRKIYYPWMKLLSMAHA 192 Query: 190 IEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEV 249 I F + N +EL L T NQMS EL + Y LE+ V EKT DL R L Sbjct: 193 IGQKDFSQRYPNNNKQDELNTLGLTLNQMSDELAQSYHQLESRVAEKTADLRNKNRVLSY 252 Query: 250 LYQCSQALNTSQ-IDVHC------FRHI-------LQIVRDNEAAEYLELNVGENWRISE 295 LYQ +Q L++++ +D+ ++I L++ D+ + E+ N +SE Sbjct: 253 LYQSNQILHSTEPLDLRLQKVLGELKNITSLKNLSLKLYEDSNEKYFHEICCTSNDPLSE 312 Query: 296 GQPNPE-LPMQIL--PVTMQETVYGELHW---------QNSHVSSSEP-----LLNSVSS 338 +P +P I+ P T+ + +H N +S + L+ +S Sbjct: 313 ---DPSFIPKDIVHHPKTLLWELSDNMHRYGVISAEIENNEDISEEQNNLVLMLVKQISG 369 Query: 339 MLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLK---RSIPEDN 395 ML + QQLL+M+ER+ IARELHDS+AQ LS L++Q++ L+ S+P+ + Sbjct: 370 MLA----MEHQIEQQQQLLIMDERSAIARELHDSIAQSLSCLKMQISYLQMQPESLPDKH 425 Query: 396 ATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDC 455 Q ++++ +N AY QLRELLTTFRL L + L +L ++ + K+ L+ Sbjct: 426 ---QQLLSEMRGEINTAYSQLRELLTTFRLKLMEPGLLPSLESTINEFSQKMGFKILLNY 482 Query: 456 RLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGE 515 +P ++ +H++QIIREA+ N +KHA+A+ V+ + G T+ I DNG GI Sbjct: 483 HIPAKSISPHQSIHIIQIIREALSNILKHAHANWAQVT-LQQDSGVVTITIEDNGEGIAP 541 Query: 516 PKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 + HYGL IMRERA L G + GGT V ++F Sbjct: 542 TPSKQNHYGLIIMRERALSLNGECEIIPRAQGGTKVQVTF 581 >UniRef50_C4K985 Histidine kinase n=1 Tax=Thauera sp. MZ1T RepID=C4K985_THASP Length = 637 Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 182/624 (29%), Positives = 288/624 (46%), Gaps = 82/624 (13%) Query: 1 MIVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRL---- 56 ++V+R + ++ A + L+ + + + + S +AI +A +LR + R+ Sbjct: 8 LLVRRSIMLLVSVALVAMTLIGLAGMSASFVVVDRSRDSVQAIAVASTLRGHTQRIANLI 67 Query: 57 ---------GYDLQSGSPQLNAHRQLFQQALHSPVLTNLNVWYVPEA----VKTRYAHLN 103 G ++ + + R+L Q AL +V EA Y + Sbjct: 68 AIDALKGRIGVSERTRAAMADIERELQQAALRR---------FVDEAPGELFAATYRGVQ 118 Query: 104 ANW-LEMNNRLSK--GDLP-------WYQANINNYVNQIDLFVLALQHYAERK---MLLV 150 A W + R+ G +P A ++++V Q+D V L ER+ + + Sbjct: 119 AGWERSVRPRIEALAGPVPPDAREVETLLAGVDDFVGQVDSLVAVLGQENERRIDELRRI 178 Query: 151 VAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGL 210 +A++ A +G+ +V L+R ++ PL L+ A++RI G F T +ELG Sbjct: 179 LALAAAVTLGVVLVVIVLLQR---ALLRPLGGLLDAARRIAGGDFGVRVRYTG-EDELGQ 234 Query: 211 LAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQC----SQALNTSQIDVHC 266 + FN M+ EL + Y LE V EKT +L + R LE+LY QA + Sbjct: 235 VGSAFNLMADELARHYHLLELRVTEKTAELQRSNRSLELLYHAIARLYQAPSAPDAYEAT 294 Query: 267 FRHILQIV-----------RDNEAAEYLELNVG-------------ENWRI-SEGQPNPE 301 R I ++ R A + ++G R SEGQ Sbjct: 295 LRDIDRVAGLEGSFVCIEPRPGAPAAVIASSMGPCPDRAERGEDACAACRAGSEGQALAL 354 Query: 302 LPMQIL--PVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGR--GLYFNQAQKHFQQ-- 355 L +L P+ +E +G L S + E + L R G+ A++ Q+ Sbjct: 355 LSPTLLRFPLRDREHHHGMLRLSLSDGARLEDWQRQLVEALSRHIGMALGAARRTEQERL 414 Query: 356 LLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSI--PEDNATAQSIMADFSQALNDAY 413 L L EER+ IARELHDSLAQ LSY++IQ++LL+R++ P A A+ I+AD + ++ AY Sbjct: 415 LALQEERSVIARELHDSLAQALSYMKIQVSLLQRALADPARTAEAEPILADLREGISAAY 474 Query: 414 RQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQI 473 RQLRELL +FRL L ADL + + + + ++ L L L +VH+LQI Sbjct: 475 RQLRELLVSFRLGL-SADLATLMEDAAREYGTRGGLEVELAVELGACQLSPNQEVHVLQI 533 Query: 474 IREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGE-PKEPEGHYGLNIMRERA 532 +REA+ N ++HA+A V+ DG + +RD+G GIG P + H+GL IMRERA Sbjct: 534 VREALSNMVRHASARHAWVALRGGADGEVLLEVRDDGCGIGAPPADARNHHGLAIMRERA 593 Query: 533 ERLGGTLTFSQPSGGGTLVSISFR 556 +GG + GT V + FR Sbjct: 594 RSMGGEIDIGPALPSGTRVCVRFR 617 >UniRef50_C7I506 GAF sensor signal transduction histidine kinase n=1 Tax=Thiomonas intermedia K12 RepID=C7I506_THIIN Length = 643 Score = 171 bits (433), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 168/606 (27%), Positives = 280/606 (46%), Gaps = 85/606 (14%) Query: 18 IVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQS-GSPQLNAHRQLFQQ 76 +LLS++S G L + A A+N+AG LRM SY++ QL++ QL Q Sbjct: 18 FLLLSLMSIGATLWISWNLEGGAAAVNVAGQLRMLSYKVALAATDHDDTQLSSDLQLIQD 77 Query: 77 ALHSPVLTNLNV----WYVP--EAVKTRYAHLNANWLEMNNRLSKGDL--PWYQANINNY 128 L VL + YVP ++ RY + A+W + R P + +N + Sbjct: 78 NL---VLLHAGSPSRPLYVPWDGIIRQRYDAVRAHWQSLQPRWESASQAHPVPREEVNQF 134 Query: 129 VNQIDLFVLALQHYAE--RKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTA 186 V QID FV +++H + +L + LA + I L+ F + V+ P+ +L Sbjct: 135 VTQIDAFVSSIEHRLDFWTTVLHAFQMGLAALVVIGALLMFYAAYLF--VLDPVGRLSRG 192 Query: 187 SQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRR 246 Q +E G + S +D N +ELG LA FN+M+ +L +Y LE V +KT L ++R Sbjct: 193 VQALEQGDY-SARVDINTTDELGDLAIGFNRMAGQLQAVYDELEERVRQKTAALRTEQQR 251 Query: 247 LEVLYQCSQALNTSQIDVHCFRHILQIVR-------------DNEAAEYLELNVG----- 288 L LY+ S ++ +Q + +Q+VR D A YL L Sbjct: 252 LAALYEVSALVSKAQSLDELSQSFVQVVRRIAGADAAALRWTDESARRYLLLASDGLPAV 311 Query: 289 ----ENWRISE----------GQPN--------PE---LPMQI------------LPVTM 311 E +S+ G P PE LP ++ +PV Sbjct: 312 LAEEEQCLMSDTCFCGQAQHHGGPQIVQFHRLQPEGRALPGRVACERLGYATLLSIPVRA 371 Query: 312 QETVYGEL----HWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIAR 367 Q+ + GE+ H + S + LL++++ L + ++ ++ + +ERA +AR Sbjct: 372 QQRLLGEIDLFFHAEQSADEAQHALLDTLAGHLAAAMESLRSAALEREAAVSQERAFLAR 431 Query: 368 ELHDSLAQVLSYLRIQLTLLKRSIPEDN-ATAQSIMADFSQALNDAYRQLRELLTTFRLT 426 ELHDS+AQ L++++IQL LL+ ++ + ++++ + ++ +RELL FR Sbjct: 432 ELHDSIAQSLAFMKIQLQLLRTALQAGKVGKIEQVVSELEVGVKESLADVRELLLHFRTR 491 Query: 427 LQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHAN 486 Q+ D+ ALR + + Q+ + L LD +Q+ +L I++EA+ N KHA Sbjct: 492 TQEQDIEPALRSTVQKFELQSGLSVDLVFHGHGQPLDPDVQIQVLHIVQEALSNIRKHAK 551 Query: 487 ASEIAVSCVTAPDGNHTVYIRDNGIGIGEP----KEPEGHYGLNIMRERAERLGGTLTF- 541 A++ + + P V D+G G +P ++ + H G IMRERA +GG L+ Sbjct: 552 ATQARLVVDSLPRWRFVV--SDDGRGY-DPEVIAQDGQAHVGQQIMRERAAAIGGHLSIE 608 Query: 542 SQPSGG 547 +QP GG Sbjct: 609 AQPKGG 614 >UniRef50_Q0HUB7 Signal transduction histidine kinase, nitrate/nitrite-specific, NarQ n=2 Tax=Shewanella RepID=Q0HUB7_SHESR Length = 589 Score = 170 bits (431), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 166/578 (28%), Positives = 250/578 (43%), Gaps = 74/578 (12%) Query: 40 AEAINIAGSLRMQSYRLGYDLQSGSPQLNAHRQLFQQALHSPVLTNLN------------ 87 A AI+ GS+RM+SYRL S P N + L +SP ++ LN Sbjct: 15 AHAIDEIGSMRMKSYRL----LSFLPLENEQKLLLA---NSPFISKLNIGKNQLNKGEDV 67 Query: 88 ----VWYVPEAVKTRYAHLNANW-LEMN-NRLSKGDLPWYQANINNYVNQIDLFVLALQH 141 V+ E + + L W L++ LS + ++ +V ++D V + Sbjct: 68 VKLKVFLEREDLINDFNDLYQYWNLQLQPTLLSAKTASDARVKVDFFVAKLDNLVKKIDS 127 Query: 142 YAERKMLLV-----VAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFD 196 E K+ LV V I L+ + I +VF LR R P +L+ + I G F Sbjct: 128 NTEVKLKLVSRVHSVFIFLSVLLTIVGVVFLKLRIFR-----PWQELLRIANSISSGDFS 182 Query: 197 SPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQA 256 + +E+ +L + MS++L K+Y LE V++KT + E L LY+ S Sbjct: 183 QRFRERKYHDEMTILGDAMSCMSTQLRKMYDELERRVQQKTLHIREQNLWLSFLYRSSNQ 242 Query: 257 LNTSQIDVHCFRHILQIVRDNEA-----------AEYLELNVGENWRISE---------- 295 L++S C R+ I+++ E EY N E ++ S Sbjct: 243 LHSSA--STCLRY-FPILKELEELIPFTSMQLRLYEYNNSNNFEQFKTSNTVRPKYCADH 299 Query: 296 ----------GQPNPELPMQILPVTMQETVYGELHWQNSHVSSSEPL----LNSVSSMLG 341 Q M P+ Q YG + + PL + ++ L Sbjct: 300 ECELCLDKSFSQSTLNCKMLEWPLRDQYGEYGVMIAYCLNDQDLTPLQSQLVKTLVEQLS 359 Query: 342 RGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSI 401 L +QL++M+ERA IARELHDS+AQ LS L+I+++ L+ A + Sbjct: 360 TSLALEYQDYKNKQLMIMDERAVIARELHDSIAQSLSCLKIKVSCLQMQSKNLGAEQLVL 419 Query: 402 MADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLA 461 + + LN AY LRELLTTFRL L + L AL ++ + + L +LP Sbjct: 420 IQEMRTELNSAYSHLRELLTTFRLKLNEPGLHPALESTIEEFNKKLGFSIELIYQLPPNC 479 Query: 462 LDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHT-VYIRDNGIGIGEPKEPE 520 + + +HL+ I+REA+ N KHANA V P NH V IRDNGIG+ Sbjct: 480 VSSHQAIHLVHIVREALSNIYKHANADCAVVQLDFDPIHNHIQVVIRDNGIGLSGDMTKV 539 Query: 521 GHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSA 558 HYG++IM +RA+ L G + GG V I F + Sbjct: 540 NHYGISIMNDRAKNLPGKCSIDNHLNGGVEVKILFNAT 577 >UniRef50_UPI00016987BE Periplasmic Sensor Signal Transduction Histidine Kinase n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI00016987BE Length = 263 Score = 169 bits (428), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 96/234 (41%), Positives = 143/234 (61%), Gaps = 4/234 (1%) Query: 332 LLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSI 391 LL +V+S + + +Q + L L+EER+ IARELHDSLAQ LSYL+IQ++ L++++ Sbjct: 15 LLETVASHIAMAINLSQRVSQNRMLSLLEERSVIARELHDSLAQSLSYLKIQVSRLEKAV 74 Query: 392 PEDNATAQSIMAD--FSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSA 449 E+ A ++ ALN AYRQLRELLTTFRL + +A L +AL E + + + Sbjct: 75 SEEQAKDDLLLISGVLRSALNGAYRQLRELLTTFRLRMSEAGLGAALDETVREYRERGGL 134 Query: 450 KLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDN 509 ++ L R+ ++H++QIIREA+ N ++HANA+ V DG T+ + D+ Sbjct: 135 EIELIDRIANCRFSPNAEIHVIQIIREALSNVIRHANATRALVKIECDMDGIVTILVEDD 194 Query: 510 GIGIGEPKEPE--GHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGE 561 G+GIG +E + HYGL IM+ERA LG L ++P GGT V +SF A+ + Sbjct: 195 GVGIGIDEEGDMMQHYGLPIMQERANWLGAELMINEPESGGTRVLLSFSIADSD 248 >UniRef50_A6D1I3 Signal transduction histidine kinase, nitrate/nitrite-specific, NarQ n=1 Tax=Vibrio shilonii AK1 RepID=A6D1I3_9VIBR Length = 583 Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 146/583 (25%), Positives = 272/583 (46%), Gaps = 45/583 (7%) Query: 7 VSASLARAFFYIVLLSILSTG--IALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQSGS 64 +S + +FF ++L SI +G I+L+T+ + +N GS+RM Y+ Sbjct: 6 ISITKKISFFILILCSISLSGMFISLITVDNIQGRTHIVNQIGSIRMLIYKSILSTDKSI 65 Query: 65 PQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPWYQAN 124 N R + L++P N+ + + + ++ +L A + E + + ++N Sbjct: 66 RSENIIR--INKKLNNP---NIIEYMIKSGLSDQHGNLLAFFQE---NIENQNYESIRSN 117 Query: 125 INNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLV 184 + +V ID + ++ E + + I A I I +++ + ++ P ++ Sbjct: 118 SDEFVKIIDNLIYKVERNTENNIKSLENIQKAFSIMIIIFGIYSIGNLYSRLFKPWMSIL 177 Query: 185 TASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAK 244 S+ I+ G F + +E+ L + N MS + + Y +LE V KT DL+ Sbjct: 178 DISRSIKSGDFSKKFIVQKHKDEMNELGDSINLMSESIKETYINLENVVYHKTEDLNRKN 237 Query: 245 RRLEVLYQCSQALNTSQID----------------VHCFRHILQIVRDNEAAEYLEL--- 285 + L+ LY+ + N Q +H + ++ ++++ + + Sbjct: 238 KYLDFLYRACKKFNNEQYSCDMLAPLTQELIELTGIHKVKILINDYQESDNTQIFDFGSI 297 Query: 286 ---NVGENWRISEGQPNPELPMQILP---VTMQET--VYGELHWQNSHVSS----SEPLL 333 + +N + N + ++ L + ++++ YG++ N+ S +E L+ Sbjct: 298 SRPDFCKNLSCNLCFDNEKTFIENLSEITIKLKDSNHDYGKIVISNNIKSCINVENEQLI 357 Query: 334 NSVSSMLGRGL-YFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIP 392 + S +L + L F + Q+ QQLL+++ER TIARELHDS+AQ LS L+I+L++L+ + Sbjct: 358 IAFSELLTQSLSVFYKVQQD-QQLLILKERNTIARELHDSIAQSLSCLKIKLSILQMDLS 416 Query: 393 EDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLT 452 + SI+ + + +N AY QLRELLTTFRL L AL + + K+ Sbjct: 417 NLDEEQISIIGEMREEVNVAYCQLRELLTTFRLRLDGLGFLPALENTVKEYNKKIGTKIN 476 Query: 453 LDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIG 512 +P + +HL+QIIRE + N KHA AS++ + ++ D + ++ I D+G G Sbjct: 477 FSYEIPANKISIHHSIHLIQIIRELLNNIYKHAQASDVTLD-LSMKDNDISLVILDDGCG 535 Query: 513 IGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 +E YGL I+ +RA+ L G G GT ++F Sbjct: 536 FSTSQE-NSRYGLKIIGDRAQSLSGKWDIISSPGKGTEFYLTF 577 >UniRef50_Q5NYZ8 Nitrate/nitrite sensor kinase n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5NYZ8_AZOSE Length = 651 Score = 167 bits (422), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 177/643 (27%), Positives = 276/643 (42%), Gaps = 111/643 (17%) Query: 15 FFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQSGSPQLNAHRQLF 74 FF + L +I G+ L A AIN AGSLRM++YR+ + L G + F Sbjct: 19 FFLVALTAI---GLTLFISWQLEGAAAAINDAGSLRMRAYRIDHLLARGPAATSNDPMAF 75 Query: 75 QQALHSPVLTNLNVW------------YVPE--AVKTRYAHLNANW-LEMNNRLS----- 114 +L S V+ ++P + + W L + L+ Sbjct: 76 TASLKSEFDDFERVFGELRRGDPRRPLFIPRDNGIPADLDEMAEFWSLRIRPVLADLIAT 135 Query: 115 ------KGDLPWYQANINNYVNQIDLFVLALQH-YAERKMLL----VVAISLAGGIGIFT 163 + L + + ++V+ I+ VL ++ YA +L V I+LA IG Sbjct: 136 SDPERRRPGLAEFDRTVKSFVSGINEVVLKMERSYARNTDILRASQVSLIALAI-IGTLV 194 Query: 164 LV--FFTLRRIRHQVVAPLNQLVTASQRIEHGQFDS--PPLDTNLPNELGLLAKTFNQMS 219 L+ FF L V+ P+ +L +R+E F++ P L ++ E G L++ FN+M+ Sbjct: 195 LIRFFFVL------VIQPVCELQDGMKRMEQEDFNARVPVLASD---EFGELSEGFNRMA 245 Query: 220 SELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNT-SQIDVHCFRHILQIVR--- 275 L LY +LE V KTR L R LE+LY L S +D C R LQ V+ Sbjct: 246 VHLQGLYATLEERVAAKTRSLEGKNRELEILYDIGAFLREPSDVDSLC-RGFLQRVQATF 304 Query: 276 ------------------------------DNEAA-EYLELNVGENWR-----ISE-GQP 298 D EA + E GE R +SE P Sbjct: 305 GAGASSARLLDSGSENLCLTVHNGLDREFIDREAVLQCGECLCGEAVRRGTSLVSELSAP 364 Query: 299 NPELPM--------QILPVTMQETVYGELHWQNSHVSSSEPL-------LNSVSSMLGRG 343 +P L + Q++ T L N + + PL L ++ LG Sbjct: 365 DPALTLSVCRRAGFQVITATAITANKQTLGIYNLYFVGARPLSDSDRLLLETLGQQLGIA 424 Query: 344 LYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNA-TAQSIM 402 + + Q ++ + EER +ARELHDS+AQ L+++ +Q+ +L+ ++ + A A+ + Sbjct: 425 IENQRLQASGREHAVSEERNLLARELHDSIAQGLAFMNLQVQMLESALDRNEAGEARDTL 484 Query: 403 ADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLAL 462 A Q + ++Y +RELL FR +++ DL A+ L L QT LD L Sbjct: 485 AMLRQGVQESYDDVRELLVHFRTRVEKQDLALAITATLRRLAEQTGIATDLDVLGDAAPL 544 Query: 463 DAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEP--- 519 DA+ + +L +++EA+ N KHANA + V DG +V +RD+G+G E Sbjct: 545 DAEAETQVLYVVQEALSNVRKHANARSVKVVIRRGIDG-LSVVVRDDGVGFDEADRSTAA 603 Query: 520 -EGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGE 561 E H GL IMRER R+GG + G GT + + + E Sbjct: 604 QEAHIGLEIMRERTLRIGGRFSIRSARGKGTEIRVELSRVKKE 646 >UniRef50_A2SGG0 Signal transduction histidine kinase, nitrate/nitrite-specific, NarQ n=2 Tax=Burkholderiales RepID=A2SGG0_METPP Length = 643 Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 165/593 (27%), Positives = 257/593 (43%), Gaps = 83/593 (13%) Query: 40 AEAINIAGSLRMQSYRLGYDLQSGS-PQLNAHRQLFQQALHSPVLTNLNVW------YVP 92 A A+N AG LRMQ++R + PQL A L QQ + L L+ +VP Sbjct: 50 AAAVNEAGRLRMQTWRYAQVASAQDLPQLPA---LAQQ--YDATLALLDAGDPARPLFVP 104 Query: 93 EAVKTRYA--HLNANWLEMNNRLSKGDLPWYQANI-NNYVNQIDLFVLALQHYAERKMLL 149 TR A + + W + +S+G P + + V +ID V ++ + +R + Sbjct: 105 RDEDTRAALQAVRSRWQALQRAISEGATPLQAGQLAGDLVIEIDHLVTGIEAHLQRWTSI 164 Query: 150 VVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELG 209 + A+ L + PL +L + + G + +D +E G Sbjct: 165 LSALQFTLLALALAAGVALLYAAHLFIFQPLARLQRGLEAVARGDLGAR-VDVETHDEFG 223 Query: 210 LLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLY----QCSQALNTSQID-- 263 +A FN M+ L LYR LE V EKT L + RL LY + +QA + ++ Sbjct: 224 EVADGFNHMAMRLEDLYRGLETKVAEKTEHLRTERERLAALYEASRRVAQAASLDELAQG 283 Query: 264 -VHCFRHI------------------LQIVRDNEAAEYLE----LNVGENWRISEGQPNP 300 V FR + L + D A LE L G+ + P Sbjct: 284 FVRQFREVARADAALLRWHDAEQGRMLMLAADRVPAAMLEHERCLAPGDCHCGNGAAPGG 343 Query: 301 ELPMQI-------------------------LPVTMQETVYGE--LHWQNSH---VSSSE 330 + I LPV +Q+ GE L W+++ + Sbjct: 344 PRTITIHALTDGDTGDSAGTCRRFGFQRVLTLPVLLQDQTLGEVDLLWRDATRPVLDDDR 403 Query: 331 PLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRS 390 LL +++ L G+ +AQ ++ + EER IARELHDS+AQ L++++IQL +L+ + Sbjct: 404 ALLEGLAAQLAGGIESVRAQALQREAAVSEERGFIARELHDSIAQALAFMKIQLQMLRGA 463 Query: 391 IPE-DNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSA 449 + D A ++ + + ++ +RELL FR A+L +ALR L Q+QT Sbjct: 464 LRRGDPAATTRVVDELDAGVRESLADVRELLLHFRTRSDGAELAAALRATLQKFQHQTGL 523 Query: 450 KLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDN 509 LD R P L L +QV LL +++EA+ N KHA A ++ V+ P+ +V +RD+ Sbjct: 524 PAQLDVRGPVLPLAPDVQVQLLHVVQEALSNVRKHAQARQVWVTLDPRPE--LSVTVRDD 581 Query: 510 GIGI-----GEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRS 557 G G +GH GL IMRERA +G + + G GT V I+ S Sbjct: 582 GRGFDLAARNSDDGDDGHVGLRIMRERAAGIGAEVEITSTRGEGTQVRIAVPS 634 >UniRef50_C4GHV1 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GHV1_9NEIS Length = 578 Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 159/571 (27%), Positives = 255/571 (44%), Gaps = 50/571 (8%) Query: 5 RPVSASLARAFFYIVLLSILSTGIAL-LTLASSLR---DAEAINIAGSLRMQSYRLGYDL 60 R + SL +V ++S IA+ +T+ SLR A A+N G LR Q+YRL L Sbjct: 3 RLIPKSLVSRLTLLVTTWLISAFIAISITMLLSLRLEGGAAAVNDTGGLRYQTYRLRLYL 62 Query: 61 QSGSPQLNAHRQLFQQAL----HSPVLTNLNV--------------WYVPEAVKTRYAHL 102 S ++ + Q F Q L HS LN+ Y +K +Y Sbjct: 63 NDTS-KVQSLIQTFDQTLARLHHSDPTRPLNLPQDRSIQQHLKLLQQYWETQIKPQYQSP 121 Query: 103 NANWLEMNNRLSKGDLPWYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIF 162 N N ++N L I N+V ID ++H + + A + IF Sbjct: 122 NPNLALLDNHL-----------IPNFVASIDSLTRTIEHNNAYYVQWLRVFQTALMVLIF 170 Query: 163 TLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQF-DSPPLDTNLPNELGLLAKTFNQMSSE 221 + T+ ++ ++ PL L T I++ QF + P D + E ++ FN+MSS Sbjct: 171 VVSGITIVLLKIWIIRPLKNLETGVAAIQNSQFGEHIPEDNS--TEFAIVDNGFNRMSSH 228 Query: 222 LHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAE 281 L +LY LE V EKT+DL L LY +Q LN +Q + L + AE Sbjct: 229 LARLYGKLEQQVAEKTQDLVRKNHTLNTLYTVAQELNQTQTIRQAAQTFLPHILALTPAE 288 Query: 282 YLELNVGENWRISEGQPNPELPMQILPVTM------QETVYGELHWQNSHVSSSEP---L 332 +++V N + + PE P + P T ET G L + P L Sbjct: 289 AADVSVHNNLIARQSKRQPETPPSLPPFTQSFKIRANETTLGTLVLYYNQRQPENPDGGL 348 Query: 333 LNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIP 392 + ++ L ++ NQ + +Q +++ER TIA+ LHDS+AQ LSYL +Q +L+ + Sbjct: 349 VQTLVHQLALAIHNNQLAEESRQYAVLQERNTIAQGLHDSIAQSLSYLSLQTQMLENAWA 408 Query: 393 -EDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKL 451 ++ AQ + + + Y +RELL FR + Q ++ A+ + L Q+ ++ Sbjct: 409 NQETQAAQENLQSIKTGIQECYDDVRELLQNFRTKITQKNINEAIETLAQRLAEQSHIRV 468 Query: 452 TLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGI 511 + L Q+ + I++E++ N KHA A + + D +T+ I D+GI Sbjct: 469 HTEWHGNGAPLTPSQQLQFIFILQESLSNIRKHAQAQNVTIRIDNQQD--YTLTITDDGI 526 Query: 512 GIGEPKE-PEGHYGLNIMRERAERLGGTLTF 541 G E + H GLNIM+ERA+R+ L+ Sbjct: 527 GFNPHTERTDDHIGLNIMQERAQRIRARLSI 557 >UniRef50_A1W358 Signal transduction histidine kinase, nitrate/nitrite-specific, NarQ n=7 Tax=Burkholderiales RepID=A1W358_ACISJ Length = 638 Score = 162 bits (410), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 168/640 (26%), Positives = 275/640 (42%), Gaps = 92/640 (14%) Query: 4 KRP-VSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQS 62 K+P +S L +L+++ S G L A A+N AG LRM R+ Q+ Sbjct: 3 KKPTLSTKLLAMGTVFLLVALASIGFTLWVTWKLEGGAAAVNEAGRLRMNMLRMVLAQQN 62 Query: 63 GSPQLNAHRQL-FQQALH-----SPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNR---- 112 SPQ A + F + L P W + + RY H+ WL + N Sbjct: 63 ESPQEFARLETRFNEGLELLRTGDPARPLFVPW--SDDTRERYEHIRRQWLLIENDWKAA 120 Query: 113 ---------LSKGDLPWYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFT 163 +++ D + +++++V I++ ++ L L +VA+++ + Sbjct: 121 AHYESSAEAVARADA--FVLDLDSFVEAIEIQIVRLTAVLHLFHLFMVALAIGSAVAFMA 178 Query: 164 LVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELH 223 L + V+ P+ +L A R+ G + L+ +E G L FN M+ L Sbjct: 179 LSYLL-------VLNPVTRLQQALARLRKGDLGTR-LEVEADDEFGQLTAGFNLMAHALQ 230 Query: 224 KLYRSLEASVEEKTRDLHEAKRRLEVLYQCS----QALNTSQIDVHCFRHILQIVRDNEA 279 + LE V EKT + +RL LY S +A + ++ + I ++ + A Sbjct: 231 TSHEDLERKVREKTATIEVRNQRLAALYAVSALAAEAGSLEELTQGFVQQIRRVAECDAA 290 Query: 280 AEYLELNVGENWRI--SEGQPN----------------------------PELPMQIL-- 307 A E + + S+G P P +P+ L Sbjct: 291 AVRWSDEANERYVLLASDGLPQSLVEHEHCVVTGACECGQAQGQARMRVIPIMPVGGLQL 350 Query: 308 --------------PVTMQETVYGE--LHWQNSHVSSSE--PLLNSVSSMLGRGLYFNQA 349 PV M + + GE L +++ S+E LL++++ L + +A Sbjct: 351 PHCREAGFETVVSIPVQMHQRLLGEVTLLYRSPLELSAEMRELLSTMAHHLATSMESLRA 410 Query: 350 QKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQS-IMADFSQA 408 ++ + +ER+ IARELHDS+AQ L++L+IQ LL+ ++ +DN A+ MA+ Sbjct: 411 SALEREAAVAQERSLIARELHDSIAQSLAFLKIQTQLLRDAVAKDNTEARDRSMAELDTG 470 Query: 409 LNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQV 468 + + Y +RELL FR Q D+ +ALR L ++QT A L L L +Q+ Sbjct: 471 VRECYADVRELLVHFRTRTQDEDIEAALRATLSKFEHQTGAATALSMAGHGLPLAQDVQI 530 Query: 469 HLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEG--HYGLN 526 +L I++EA+ N KHA+A + + P V +D+G G P H GL Sbjct: 531 QVLHILQEALSNVRKHADARRVELRVQRHPRWRFEV--QDDGRGFDPDSVPPDSLHVGLG 588 Query: 527 IMRERAERLGGTLTF-SQPSGGGTLVSISFRSAEGEESQL 565 IMRERA+R+G L S+P GGGT V + EE L Sbjct: 589 IMRERAQRIGAHLELVSRPGGGGTCVVLELPPTTREEPAL 628 >UniRef50_B4RLW4 NarX/NarQ n=17 Tax=Neisseria RepID=B4RLW4_NEIG2 Length = 589 Score = 158 bits (400), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 150/551 (27%), Positives = 247/551 (44%), Gaps = 51/551 (9%) Query: 40 AEAINIAGSLRMQSYRLGYDLQSGSPQLNAHRQL--FQQALHS--------PVLTNLNVW 89 A I AG+L+MQ+YRL Y GSP+ Q+ F+++L P++ + N Sbjct: 46 ASVIEEAGNLKMQAYRLAYMAGEGSPRAQIDNQIAEFEKSLKRISQSDAIHPLIPSDN-- 103 Query: 90 YVPEAVKTRYAHLNANWLEMNNRLSKGDLPWYQA-------NINNYVNQIDLFVLALQHY 142 P A + L +W LP QA + + I+LF+ AL++ Sbjct: 104 --PLAYDLIQSMLIIDW-------QANILPPLQAYRRPTQIELYRFAGNIELFLQALENA 154 Query: 143 AERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQ--VVAPLNQLVTASQRIEHGQFDSPPL 200 E+ + I + TLV L HQ V+ PL L ++RI FD P Sbjct: 155 GEKNTWWLRRFQWV--IMLMTLVSSVLMLFWHQIWVIRPLQALREGAERIGQRHFDIPVP 212 Query: 201 DTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTS 260 + P E + + FNQM+ L LY LE V E+T +L + R L +LY+ ++ L+ S Sbjct: 213 EDGTP-EFKQVGRCFNQMALRLKTLYDDLEGQVAEQTHNLEKQNRNLTLLYRTTRDLHQS 271 Query: 261 ----QIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPM-----QILPVTM 311 Q HIL V LE + + + + P+ + P+ Sbjct: 272 YTPRQAAEEFLNHILPAVGAQSGNICLENGSDTDISVHTAEHGKKPPLEKYHDETFPIEY 331 Query: 312 QETVYGELHWQNSHVSS----SEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIAR 367 Q G L S +S LL ++ LG L + ++ + L +++ER+ IA+ Sbjct: 332 QNEKLGMLSLGFSDGTSLTGDDRTLLQTLIRQLGVSLAGAKQEEEKRLLAVLQERSLIAQ 391 Query: 368 ELHDSLAQVLSYLRIQLTLLKRSIPEDN-ATAQSIMADFSQALNDAYRQLRELLTTFRLT 426 LHDS+AQ L++L +Q+ +L+ + E+ A + + + Y +RELL FR Sbjct: 392 GLHDSIAQALTFLNLQVQMLETAFAENKREEAAENIGFIKTGVQECYEDVRELLLNFRTK 451 Query: 427 LQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHAN 486 + + P A+ ++ QT + + Q+ ++ I++E++ N KHA Sbjct: 452 ISNKEFPEAVADLFARFTQQTGITVETVWENGSFLPTQDEQLQMIFILQESLSNIRKHAR 511 Query: 487 ASEIAVSCVTAPDGNHTVYIRDNGIGIGEPK--EPEG-HYGLNIMRERAERLGGTLTFSQ 543 A+ + + ++ G T+ I+DNG G K EP G H GL+IM+ERA+R+ L Sbjct: 512 ATHVKFT-LSEYGGRFTMTIQDNGQGFDTEKIGEPTGSHVGLHIMQERAKRIRAVLEIRS 570 Query: 544 PSGGGTLVSIS 554 + GT VS++ Sbjct: 571 QAQQGTTVSLT 581 >UniRef50_A9LZC9 Two-component system, NarL family, nitrate/nitrite sensor histidine kinase n=9 Tax=Neisseria RepID=A9LZC9_NEIM0 Length = 536 Score = 155 bits (393), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 160/550 (29%), Positives = 258/550 (46%), Gaps = 56/550 (10%) Query: 49 LRMQSYRLGYDLQSGSP--QLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRY----AHL 102 +RMQ+YRL Y GSP Q++ F+++L+ ++ +P Y + L Sbjct: 1 MRMQAYRLAYMAGEGSPRSQIDNQVDEFEKSLNRISQSDAIHPLIPSDTPLAYDLIQSML 60 Query: 103 NANW-------LEMNNRLSKGDLPWYQANINNYVNQIDLFVLALQHYAERKMLLVVAISL 155 +W L+ R ++ DL + NI +LF+ AL++ E+ + Sbjct: 61 IIDWQAHILPPLQSYRRPTQVDLYRFAGNI-------ELFLQALENANEKNTWWLRRFQW 113 Query: 156 AGGIGIFTLVFFTLRRIRHQ--VVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAK 213 A I + TLV L HQ V+ PL L ++RI FD P + P E + + Sbjct: 114 A--IMLMTLVSSVLMLFWHQIWVIRPLQALREGAERIGRRCFDIPVPEGGTP-EFKQVGR 170 Query: 214 TFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQI 273 FNQM L LY LE V E+TR L + + L +LYQ ++ L+ S I H L Sbjct: 171 CFNQMGGRLKILYDDLEGQVAEQTRSLEKQNQNLTLLYQTTRDLHQSYIPQQAAEHFLNR 230 Query: 274 VRDNEAAE--YLELNVGENWRIS-----EGQPNPELPM---QILPVTMQETVYGE--LHW 321 + A+ + L+ G + +S G +L +I P+ Q G L + Sbjct: 231 ILPAVGADSGRVCLDGGSDVYVSIHHADCGTAASDLGKYHEEIFPIEYQNETLGRLLLSF 290 Query: 322 QNSHVSSSEP---LLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLS 378 N +S E LL ++ LG L + ++ + L +++ER IA+ LHDS+AQ L+ Sbjct: 291 PNG-ISLDEDDRILLQTLGRQLGVSLAGAKQEEEKRLLAVLQERNLIAQGLHDSIAQALT 349 Query: 379 YLRIQLTLLKRSIPEDN-ATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALR 437 +L +Q+ +L+ + E+ A + + + Y +RELL FR + + P A+ Sbjct: 350 FLNLQVQMLETAFAENKREEAAENIGFIKTGVQECYEDVRELLLNFRTKISNKEFPEAVA 409 Query: 438 EMLDTLQNQTSAKLTL----DCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVS 493 ++ QT + LPT D Q+Q ++ I++E++ N KHA A+ + + Sbjct: 410 DLFARFTQQTGTTVETVWENGTHLPT--QDEQLQ--MIFILQESLSNIRKHARATHVKFT 465 Query: 494 CVTAPDGNHTVYIRDNGIGIGEPK--EPEG-HYGLNIMRERAERLGGTLT-FSQPSGGGT 549 ++ G T+ I+DNG G K EP G H GL+IM+ERA+R+ L +SQP GT Sbjct: 466 -LSEHGGRFTMTIQDNGQGFDTEKIGEPTGSHVGLHIMQERAKRIRAVLKIYSQPQ-QGT 523 Query: 550 LVSISFRSAE 559 VS++ S E Sbjct: 524 TVSLAGVSEE 533 >UniRef50_C5T4I9 GAF sensor signal transduction histidine kinase n=2 Tax=Acidovorax RepID=C5T4I9_ACIDE Length = 653 Score = 155 bits (392), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 166/632 (26%), Positives = 267/632 (42%), Gaps = 93/632 (14%) Query: 1 MIVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDL 60 M K P++ L +L+++ S G+ L A A+N AG LRM R+ Sbjct: 16 MRTKSPLTFKLLAMGGGFLLVALASIGLTLWVAWKLEGGAAAVNEAGRLRMNMLRMVLVQ 75 Query: 61 QSGSP--------QLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTR--YAHLNANWLEMN 110 Q+ SP Q +A +L + S L +VP TR + + W + Sbjct: 76 QTESPEEVQRHARQFDASLELLRTGDPSRPL------FVPWGADTRERFEEIRTTWGGLR 129 Query: 111 NRLSKG---DLPWYQANINNYVNQIDLFVLAL--QHYAERKMLLVVAISLAGGIGIFTLV 165 + G D A +++V+++D FV A+ Q +L + +S+ + Sbjct: 130 KEWAVGLPPDRARSLAQADSFVHKVDGFVEAIEIQIAGWTAVLHIFQLSMMAVAIAAAIT 189 Query: 166 FFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLP----NELGLLAKTFNQMSSE 221 F + + V+ P++QL A R+ G L LP +E G L+ FN M+ Sbjct: 190 FMAVSYL--LVLNPVSQLQQAQARLRQGD-----LGVRLPVEADDEFGQLSAGFNLMAHA 242 Query: 222 LHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRH--ILQIVR---- 275 L + LE V EKT ++ +RL LY+ S AL +S + + QI R Sbjct: 243 LQASHEELEQKVREKTANIAVQNQRLAALYEVS-ALASSATGLEALAQGFVKQIRRVAGA 301 Query: 276 -------DNEAAEYLELNVGENWRISE--------------GQPN--------PELP--- 303 +EA E L G+ ++ GQP P +P Sbjct: 302 DAAAVRWSDEANERYVLLAGDGMPVAMTEEEHCLHTGACMCGQPQSQARTRVIPIVPSTT 361 Query: 304 -------------MQILPVTMQETVYGELHW----QNSHVSSSEPLLNSVSSMLGRGLYF 346 M +PV MQ+ + GE++ +H LL +++ L + Sbjct: 362 LAFPHCRDAGFQTMVAIPVQMQQRLLGEINLFFRSPTAHTDEVRDLLEAMTRHLASAMEG 421 Query: 347 NQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQS-IMADF 405 +A ++ + EER+ +ARELHDS+AQ L++L+IQ LL+ ++ + + A+ M + Sbjct: 422 LRATALEREAAVAEERSLLARELHDSIAQSLAFLKIQTQLLRDAVAKGDVVARDRSMGEL 481 Query: 406 SQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQ 465 + + Y +RELL FR + D+ +ALR L ++QT TL L L Sbjct: 482 DVGVRECYADVRELLVHFRTRTSEEDIEAALRATLSKFEHQTGIATTLTMAGHGLPLPPD 541 Query: 466 MQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEG--HY 523 +Q+ +L +++EA+ N KH+ A+ + + P V DNG G P H Sbjct: 542 VQIQVLHMVQEALSNVRKHSGATRVELHVHRHPRWRFEVL--DNGTGFRVDAVPPDSLHV 599 Query: 524 GLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 GL IMRERA+R+G + G G V I Sbjct: 600 GLGIMRERAQRIGAVVQVESSPGEGARVCIEL 631 >UniRef50_C1D9F9 NarX n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D9F9_LARHH Length = 637 Score = 154 bits (390), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 158/594 (26%), Positives = 271/594 (45%), Gaps = 95/594 (15%) Query: 40 AEAINIAGSLRMQSYRLGYDLQSGSP--QLNAHRQLFQQALHS--------PVLTNLNVW 89 A AIN AGSLR ++Y L Y + S +P ++ RQ F+ L++ P+ N Sbjct: 49 AAAINDAGSLRKRTYHLAYLIASHAPAARIEHERQDFRVTLNNLRQGDPARPLFLPDN-- 106 Query: 90 YVPEAVKTRYAHLNANWL-EMN---NRLSKGDLPWYQANINNYVNQIDLFVLALQHYAER 145 PE V A ++A W E++ R +G++ + + VN I+L V ++ R Sbjct: 107 --PE-VHRMAALIDARWQNEVHPYVQRALRGEIQLTAVDFEDVVNDINLLVHLIELDNAR 163 Query: 146 KMLLV-------VAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSP 198 L+ +A++L G + + L++ V+ P+ QL +++ G + Sbjct: 164 NTTLLRFFQTSLIAMALIGCVTMLYLLYLL-------VIQPVRQLGAGMRKLHDGDLGAR 216 Query: 199 PLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALN 258 + +E G+L++ FN+M+ L LY +LE V EKT + E R+L LYQ + L+ Sbjct: 217 -VKVASRDEFGVLSEGFNEMARRLQDLYANLEDKVREKTLSVEEKNRQLTALYQVTSFLH 275 Query: 259 TSQIDV------HCFRHILQIVRDNEAA-EYLE-----------------LNVGENWRIS 294 Q + ++ +V + A+ ++++ LNV E Sbjct: 276 RPQTQTLDEMGEGFLQRVMALVGADAASLKFVDAQRGKLDQIVSVGLPDSLNVHETCVSV 335 Query: 295 EGQPNPELPMQILPVT--MQETVYGELHWQNS--------HV------------------ 326 E P Q LPV + E G+ +N+ HV Sbjct: 336 EQCPCGAALKQALPVAVHLNEVCAGDWPCRNTGFASLAVFHVRYHGQNVALLTLLFRTPR 395 Query: 327 SSSEP---LLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQ 383 S +EP L+ +++S LG + + + +QL + EER +A+ LHDS+AQ LS+L +Q Sbjct: 396 SVAEPDANLIETLASHLGTAIESRRLAERERQLAVAEERNLMAQGLHDSIAQSLSFLNLQ 455 Query: 384 LTLLKRSIPE-DNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDT 442 + +L+ ++ ++ AQ +A + + + Y +RELL FR + + + P A+R +L Sbjct: 456 VQMLESALEAGESEAAQENLAFIREGVAECYEDVRELLLNFRTRISKEEFPDAVRTLLAR 515 Query: 443 LQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNH 502 + Q L L L+ + Q+ ++ I++EA+ N KHA A ++ V+ D Sbjct: 516 FEQQARVLTHLQLEGEGLPLNPEQQLQVIFILQEALSNIRKHAAAGKVEVNIRNGQD--F 573 Query: 503 TVYIRDNGIGIGE---PKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSI 553 + I D+G G + H GL+IMRERA R+ T+ G GT VS+ Sbjct: 574 EMDIVDDGYGFDQSALAARQARHVGLSIMRERATRIAATVDIMSRPGEGTRVSL 627 >UniRef50_C4KA07 GAF sensor signal transduction histidine kinase n=2 Tax=Betaproteobacteria RepID=C4KA07_THASP Length = 655 Score = 154 bits (389), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 178/642 (27%), Positives = 276/642 (42%), Gaps = 120/642 (18%) Query: 14 AFFYIVLLSILSTGIALLTLASSLR---DAEAINIAGSLRMQSYRLGYDLQSGSPQLNAH 70 FF + L +I LTL S R A AIN AGSLRM+ YR+ + L + Sbjct: 26 GFFLVALAAIA------LTLFISWRLEGAAAAINDAGSLRMRLYRVAHHLARADLH-TSD 78 Query: 71 RQLFQQALHSPVLTNLNVW------------YVPE--AVKTRYAHLNANW-LEMN----- 110 RQ F L + V + +VP ++ + ++ W +++ Sbjct: 79 RQGFAGDLRARVDDFDRILGVLRRGDPSRPLFVPREAGIQQVLSGMSEEWSVQLRPILLA 138 Query: 111 -------NRLSKGDLPWYQANINNYVNQIDLFVLAL-QHYAERKMLL------VVAISLA 156 L + L + +A +YV I+ FVL + Q YA +L +VA+++ Sbjct: 139 IAADPDPANLHRRGLEFDRA-ARDYVEDINDFVLRMEQSYARNTNILRTSQVILVALAVI 197 Query: 157 GGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDS--PPLDTNLPNELGLLAKT 214 G I + F T V+ P+ +L +R+ FD+ P L + E G L+ Sbjct: 198 GTILLLRFFFLT-------VIRPVFELHEGVKRMGQEDFDARVPVLSQD---EFGELSAG 247 Query: 215 FNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNT-SQIDVHC------- 266 FN+M++ L +Y +LE V KTR L E R LE+LY+ L + +D C Sbjct: 248 FNRMAAHLQNVYDTLEERVVAKTRSLEEKNRELEILYEIVAFLREPNDVDTLCKGFLERV 307 Query: 267 -----------------FRHILQIVRDNEAAEYLE----LNVGENWRISEGQPNPELPMQ 305 R++ IV D ++L+ L GE E L + Sbjct: 308 QKTMGASASSARLLDLESRNLCMIVHDGLGDDFLDREEVLACGECV-CGEAAQGSGLSLT 366 Query: 306 ILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGR-GLYFNQ------AQKHF----- 353 + V + + + S + + LG LYF+Q A + Sbjct: 367 LDVRNAALAVTRDACRRAGFRTVSATSITASKRALGVFNLYFDQPDAIGDADRQLLEALG 426 Query: 354 QQL----------------LLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNAT 397 QQL + EER +ARELHDS+AQ L++L +Q+ +L+R++ E+ A Sbjct: 427 QQLGIAIENQRLHARERELAVSEERNLLARELHDSIAQGLAFLNLQVQMLERALAENRAA 486 Query: 398 AQSIMAD-FSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCR 456 S + + + ++Y +RELL FR ++Q DL +A+ L L QT LD + Sbjct: 487 DVSTTVEMLRRGIQESYEDVRELLVHFRTRVEQQDLDAAIAAALRRLAEQTGIATDLDVQ 546 Query: 457 LPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEP 516 LD + + +L II+EA+ N KHA AS ++V DG V +RD+G+G E Sbjct: 547 GDGAPLDPEAETQVLYIIQEALSNVRKHAGASTVSVGVRRGRDG-LAVTVRDDGVGFAED 605 Query: 517 KEP---EGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 ++ E H GL IMRERA R+GG G GT + + Sbjct: 606 RDASDSEAHIGLQIMRERAMRIGGRFAVRSSPGRGTEIRLEL 647 >UniRef50_B2JVQ4 Integral membrane sensor signal transduction histidine kinase n=1 Tax=Burkholderia phymatum STM815 RepID=B2JVQ4_BURP8 Length = 605 Score = 151 bits (381), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 100/274 (36%), Positives = 156/274 (56%), Gaps = 28/274 (10%) Query: 299 NPELPMQIL--PVTMQETVYGELHWQNSHVSSSEP----------LLNSVSSMLGRGLYF 346 N E+P +L PV + YG L ++ EP L+ +++S+L + Sbjct: 324 NGEVPPPVLAAPVRVPLASYGVL------IAEGEPETRFELRHLYLIETIASVLAHAISN 377 Query: 347 NQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFS 406 +++ L EER IARELHDSLAQ LSY++IQL L+ +P + +QS +A+ + Sbjct: 378 LSRDVRDRRMALFEERNAIARELHDSLAQSLSYMKIQLARLQAVLPPE--LSQSDIAEIA 435 Query: 407 ----QALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLAL 462 + ++ AYRQLRELLTTFR + L S L E+ + +++ ++++D R+P + L Sbjct: 436 RGIREGIDSAYRQLRELLTTFRSPMHAHGLASTLEELAEEFGSRSEVQISIDNRVPRMRL 495 Query: 463 DAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDG-NHTVYIRDNGIGIGEPKEPEG 521 ++H+ QI+REA+ N ++HA A+ V ++ DG TV I D+G GI + E Sbjct: 496 SVNEEMHVAQIVREALTNVLRHARATTAQVQLMS--DGRTMTVSIDDDGRGINRTEGDEH 553 Query: 522 HYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 HYGL+IMRERA LGG L +P+ G+ V ++F Sbjct: 554 HYGLSIMRERARSLGGRLEV-KPAERGSRVVLTF 586 >UniRef50_Q1H473 Signal transduction histidine kinase, nitrate/nitrite-specific, NarQ n=1 Tax=Methylobacillus flagellatus KT RepID=Q1H473_METFK Length = 603 Score = 151 bits (381), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 83/207 (40%), Positives = 120/207 (57%), Gaps = 1/207 (0%) Query: 350 QKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQAL 409 ++ ++L L EERA IARELHDSLAQ L+Y++IQ+ L+ I + + L Sbjct: 391 EEQARRLALFEERAAIARELHDSLAQSLAYMKIQIARLQTQGSGGQHDTNEITTELREGL 450 Query: 410 NDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVH 469 + AYR+LRELL+TFR+ + L A++ +D +++S +TLD RL L + H Sbjct: 451 DTAYRELRELLSTFRMHMDVRGLGFAIQAAIDEFSHRSSVSITLDNRLVNCRLTVNEEFH 510 Query: 470 LLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPE-GHYGLNIM 528 +L +IREA+ N ++HA A + V+ P V I D+G+GI E GHYG +IM Sbjct: 511 ILHVIREALSNIIRHAGAKNVVVALAYTPGSTVVVTIDDDGVGIPATATDEPGHYGQSIM 570 Query: 529 RERAERLGGTLTFSQPSGGGTLVSISF 555 R+RA LGG +T S GGT V + F Sbjct: 571 RDRAYSLGGDITISARRQGGTRVRLIF 597 >UniRef50_A5WD78 Integral membrane sensor signal transduction histidine kinase n=1 Tax=Psychrobacter sp. PRwf-1 RepID=A5WD78_PSYWF Length = 640 Score = 148 bits (374), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 85/237 (35%), Positives = 136/237 (57%), Gaps = 7/237 (2%) Query: 326 VSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLT 385 +++++P + ++++++ ++ Q ++ Q++L+EERATIARELHDSLAQ LSYL+IQ T Sbjct: 397 IANNKPAITALTNLISTAMFLLQQRQQEHQIILLEERATIARELHDSLAQSLSYLKIQTT 456 Query: 386 LLKRSIPE------DNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREM 439 +L++ + D A + L AY+ LR+LL TFRL+L AL Sbjct: 457 ILEKRLQHTHCDSPDLALVSDSIGKLKDGLTSAYQHLRDLLVTFRLSLNDDSFDEALHNS 516 Query: 440 LDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPD 499 + + + + ++ +L L A QV+++QI+REA+ N +HANA + V+ D Sbjct: 517 AEEFAKKGGFNVKVSNQVISLNLSASEQVNVIQIVREALSNICRHANAKNVTVNFGYIAD 576 Query: 500 GNHTVY-IRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 N T+ I D+G G+ + H+GL IM+ERA+ LGG LT S GT+V F Sbjct: 577 SNDTLLSISDDGKGLSGSFDQTHHHGLMIMQERAKSLGGQLTVSNNEPTGTVVEARF 633 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 69/285 (24%), Positives = 131/285 (45%), Gaps = 35/285 (12%) Query: 6 PVSASLA-RAFFYIVLLSILSTGIALLT--LA-SSLRDAEAINIAGSLRMQSYRLGYDL- 60 P+ +LA R++ L+ +L G AL + LA ++ DA+AIN AGS+RM +YR+ + L Sbjct: 2 PIPNTLAVRSWIATTLIILLFLGTALSSGFLAWAAQNDAKAINTAGSIRMATYRMNFLLV 61 Query: 61 --QSGS-----------------PQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAH 101 QS + +N + L Q + ++ E Sbjct: 62 ANQSSAELRAADISSVQQINQLIDDMNQRQSLLQHYQSQRTNKDTRIYRQIE-------R 114 Query: 102 LNANWLE--MNNRLSKGDLPWYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGI 159 ++ W + M L++ + +Y+A++ Y+ Q+D V LQ+ E++ + L Sbjct: 115 IHQGWTQTLMPLLLARDSVGFYKASLP-YIQQVDAVVSQLQYRNEQRQNRQQLLQLISMS 173 Query: 160 GIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMS 219 + ++ + +R +V+ P+ +L+ A G+ ++ T E L ++FN M Sbjct: 174 LMILIMIGGIYELRKKVLLPVKKLMQAKAAFTSGKLETRVHLTGYK-EFEELGRSFNDMV 232 Query: 220 SELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDV 264 S + + + LE + KT L +A + L +LY ++ L TSQ+ + Sbjct: 233 STIEQNKQFLERQIALKTAHLTQANQVLSLLYDFAKYLTTSQVSI 277 >UniRef50_C6XAG1 Histidine kinase n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6XAG1_METSD Length = 608 Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 78/184 (42%), Positives = 117/184 (63%), Gaps = 2/184 (1%) Query: 358 LMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLR 417 L++ERA IARELHDSLAQ LS+++IQ+ L+ +A + I+ + Q L++AYR+LR Sbjct: 405 LLDERAAIARELHDSLAQSLSFMKIQIFRLQSHPQTQHADLRGIVNELRQGLDNAYRELR 464 Query: 418 ELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREA 477 ELL+TFR+ + L A++ +D +++ + LD RL L + H+L +IREA Sbjct: 465 ELLSTFRVHMDVRGLRFAIQSAIDEFMQRSNLSIALDNRLVNCRLTVNEEFHILHVIREA 524 Query: 478 VLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIG-EPKEPEGHYGLNIMRERAERLG 536 + N ++H+ AS + V+ V +G+ V I D+GIG +P EP GHYG +IM+ERA LG Sbjct: 525 LSNIVRHSGASTVTVALVYQSNGSVIVTIDDDGIGYASKPGEP-GHYGHSIMQERAYSLG 583 Query: 537 GTLT 540 G L Sbjct: 584 GELA 587 >UniRef50_C6QH09 Histidine kinase n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QH09_9RHIZ Length = 619 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 82/231 (35%), Positives = 133/231 (57%), Gaps = 11/231 (4%) Query: 333 LNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIP 392 L +S+L + + +++ ++EERA IARELHDSLAQ LS+++IQL L+ Sbjct: 384 LRITASLLSMAAKLDGHDQEARRIAVLEERAAIARELHDSLAQSLSFMKIQLARLQSY-- 441 Query: 393 EDNATAQS------IMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQ 446 ++N T++S I ++ L++AYR+LRELL TFR+ + L A+ ++ + Sbjct: 442 QNNVTSESREQTKAITSELRHGLDNAYRELRELLATFRVHMDVRGLDFAIESAIEEFSQR 501 Query: 447 TSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYI 506 + ++LD RL AL + H+L ++REA+ N ++HA A+ + ++ +G TV I Sbjct: 502 SGLPISLDNRLAGAALTVNEEFHVLHVVREALSNILRHARATNVWITMDVRRNGEVTVTI 561 Query: 507 RDNGIGI--GEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 D+GIG E KE H+G IM+ERA LGG + + GT V+++F Sbjct: 562 DDDGIGYRPAETKETS-HHGQTIMKERAFSLGGAIDIAPRPEAGTRVTLTF 611 >UniRef50_B9Z081 Multi-sensor signal transduction histidine kinase n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z081_9NEIS Length = 645 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 155/620 (25%), Positives = 268/620 (43%), Gaps = 128/620 (20%) Query: 40 AEAINIAGSLRMQSYRLGYDLQSGSPQLNAHRQLFQQALHSPVLTNLNVWY--------- 90 A AIN AGSLRM++ RL D+Q + L V+ N V Y Sbjct: 50 AAAINDAGSLRMRATRLSLDVQ----------RFHDGKLPREVVQNSIVRYDQTLAVLRR 99 Query: 91 --------VPEAVKT--RYAHLNANW-----------LEMNNRLSKGDLPWYQANINNYV 129 VP K + ++ W L + S + +Q+ ++YV Sbjct: 100 GDSARPLLVPRTAKILLDFKNVADQWHGRIRPLGQAILAAGSEASPQSIARFQSMTSDYV 159 Query: 130 NQIDLFVLALQHYAERKM-------LLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQ 182 + I+ FV ++ Y R L++ A+++ G + + ++ V+ PL++ Sbjct: 160 DLINRFVADMEAYNARNTEYLRYCQLMLAALAVVGTVALIYMMMLL-------VLNPLDK 212 Query: 183 LVTASQRIEHGQFD-SPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLH 241 L Q + GQ D S P++++ +E +++ FN M+ L + +LE V KT L Sbjct: 213 LHQGIQLLAEGQLDVSVPVESD--DEFAQVSQGFNLMAQRLAEARATLEERVRAKTASLQ 270 Query: 242 EAKRRLEVLYQCSQALNTSQ---------------------------------------- 261 + + L +LY+ S LN Q Sbjct: 271 QKNKELALLYEISAFLNQPQSLESLCQGFLAKVMAAYRADGGAVRLTDHEQGIVYVVADQ 330 Query: 262 -------IDVHCFR---HILQIVRDNEAAEYLELNVGENWRIS-EGQPNPELPMQILPVT 310 + HC R + V ++ ++ L+V +N S EG + P+T Sbjct: 331 GMPEALLKEEHCMRVGDCLCGEVAEHSSSRVETLSVADNKSCSREGYR----VISAFPIT 386 Query: 311 MQETVYG--ELHWQNSHVSSSEPLLNSVSSMLGRGLYFN-QAQKHF---QQLLLMEERAT 364 +Q G LH++ S + + P + +LG+ L + Q+ F ++L ++EER Sbjct: 387 VQGRSLGLFNLHYRQSVIMT--PQQTRLLEVLGQNLAVAIENQRLFAKERELAVLEERNL 444 Query: 365 IARELHDSLAQVLSYLRIQLTLLKRSIP-EDNATAQSIMADFSQALNDAYRQLRELLTTF 423 +A+ LHDS+AQ LS+L +Q +L++++ D + + ++Y +RELL F Sbjct: 445 VAQGLHDSIAQGLSFLNLQAQMLRQALQLGDKELLDDTVGLIETGIKESYDDVRELLNNF 504 Query: 424 RLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMK 483 R L ++ L A+ +L+ + QT K+ L T+ L + Q+ +L I++E + N K Sbjct: 505 RSKLSES-LMQAISTVLERFRRQTGIKVELRSEGLTVPLMPEQQLQILFILQEVLSNVRK 563 Query: 484 HANASEIAVSCVTAPDGN-HTVYIRDNGIGIGEPK---EPEGHYGLNIMRERAERLGGTL 539 HA A+++ V DG+ + I+DNG+G + + H+GL+IM+ERA R G L Sbjct: 564 HAQATQVVVHL--KDDGSAFELDIKDNGVGFAMATVAGKADTHFGLSIMKERAARAGVAL 621 Query: 540 TFSQPSGGGTLVSISFRSAE 559 S G GT V + A+ Sbjct: 622 RISSQPGRGTSVHLHLPRAQ 641 >UniRef50_C0N1R0 Histidine kinase domain protein n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N1R0_9GAMM Length = 615 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 75/228 (32%), Positives = 126/228 (55%), Gaps = 3/228 (1%) Query: 328 SSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLL 387 S +L + +L F + ++L ++EERA IARELHDSLAQ LS+++IQ+ L Sbjct: 385 SEVKVLEITTRLLSMVTKFQSHDEEGRRLAVLEERAAIARELHDSLAQSLSFMKIQVARL 444 Query: 388 KRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQT 447 + + A ++ + + L++AYR+LRELLTTFR+ + L A++ +D ++ Sbjct: 445 Q---AKSGAQQDDVVKELREGLDNAYRELRELLTTFRVHMDLRGLGYAIQATIDEFSQRS 501 Query: 448 SAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIR 507 ++ D RL L + H+L ++REA+ N ++H+ A + + + +G + I Sbjct: 502 QLVISFDNRLVNCRLTVNEEFHILHVVREALSNIVRHSGADNVTILMLLQKNGEVELTID 561 Query: 508 DNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 D+G+G + H+G IM+ERA+ LGG + GGT V +SF Sbjct: 562 DDGVGFHPASDTYDHHGQAIMKERAQTLGGNVEVMARRFGGTRVRLSF 609 >UniRef50_Q7N5B4 Similar to nitrate/nitrite sensor protein NarX n=2 Tax=Photorhabdus RepID=Q7N5B4_PHOLL Length = 410 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 97/273 (35%), Positives = 142/273 (52%), Gaps = 22/273 (8%) Query: 299 NP-ELPMQILPVTMQETV------YGELHW----QNSHVSSSEPLL--NSVSSMLGRGLY 345 NP + P +P+ M+ + YG L W +NS ++ E L + V+ M + L Sbjct: 141 NPHQCPYFDMPLIMRWNLDDNIDSYGTL-WIKTHRNSDLTPDEKSLVQDVVTLMTNKLLR 199 Query: 346 FNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLL---KRSIPEDNATAQSIM 402 NQ Q Q +L ER I+RELHDS+AQ LS+L+IQ+ L ++P+ + T+ +++ Sbjct: 200 ENQIQCQHQSML-AAERTAISRELHDSIAQSLSFLKIQVNCLYIGSDNLPKQSLTSLNMI 258 Query: 403 ADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLAL 462 D LN AYRQLRELL TFR Q +L +L+ ++ ++ + + RL + Sbjct: 259 KD---ELNIAYRQLRELLATFRNEQPQCNLQESLQTLISEFNHRLGFNIEFNYRLTHQHI 315 Query: 463 DAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGH 522 HL+QIIRE + N KHANA+ I++ D TV + DNG GI + Sbjct: 316 PDSYSKHLIQIIRECLNNCYKHANANWISIRIYPIDDKIITV-VSDNGQGINLDSANKNK 374 Query: 523 YGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 +GL IM++R LGG L GGT V I F Sbjct: 375 FGLAIMQDRVSILGGQLQIKNRKHGGTEVEIQF 407 >UniRef50_C0DXM5 Sensor protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DXM5_EIKCO Length = 619 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 120/452 (26%), Positives = 201/452 (44%), Gaps = 66/452 (14%) Query: 156 AGGIGIFTLVFFT----LRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLL 211 +G IG+ L+ + R +R V+ PL L A +I HG+ + +N +E + Sbjct: 173 SGRIGLMLLILLSAAVSFRLLRQVVLRPLGTLYQAMNQITHGRLGTRIAGSNSGDEFEAV 232 Query: 212 AKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNT----SQIDVHCF 267 A FN+M+ L ++Y LE V EKT L K E+LY + L+ S+++ Sbjct: 233 ADGFNRMADNLQEMYAHLEDKVAEKTAALSRQKSEWEMLYYVTSYLHKQSFGSEVEQAFL 292 Query: 268 RHILQIVRDNEAAEYLELNVGENWRISEGQPNP------ELPMQILPVTM---QETVYGE 318 +L++ + W +G E + LP T QE+ G Sbjct: 293 ERMLRLSHSGGGGIF--------WLAEKGFTTACDIGLLEGLAERLPHTHTAEQESEAGN 344 Query: 319 LHWQNSHVSS----------------------SEPLLNSVSSMLGR------GLYFNQAQ 350 + W + + PLL++ ++ L R G+ A Sbjct: 345 MVWMQGEEGALVALVPIYALGGFQGWLALSKPTVPLLSAQNTGLMRLLCTQLGIARENAA 404 Query: 351 KHF--QQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRS--IPEDNATAQSIMADFS 406 QQ ++EER+ IAR LHDSLAQ LS++ ++ +L ++ +P+D + +I Sbjct: 405 MTLLKQQNAVLEERSRIARSLHDSLAQSLSFINMRFQMLSKNKLLPDDKSVRDNIEM-IR 463 Query: 407 QALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQM 466 + Y +RELL FR Q + +R +++ + Q + L L+++ Sbjct: 464 DGIQYCYEDVRELLDHFRAKPQYGNFAETVRSVIERSRKQAGIPVVLHISGGDCLLNSEQ 523 Query: 467 QVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPK-----EPEG 521 Q L I++EA+ N KHA+A + V + DG T+ +RD+G G +P+ EP Sbjct: 524 QTQALFILQEALSNIRKHADAQQAEV-LLENGDG-FTIIVRDDGQGF-DPESRAEAEPGQ 580 Query: 522 HYGLNIMRERAERLGGTLTFSQPSGGGTLVSI 553 H GL++M ERAE++G ++ G GT V + Sbjct: 581 HIGLSVMHERAEKIGAEISIRSRPGSGTEVRL 612 >UniRef50_B8GUD0 GAF sensor signal transduction histidine kinase n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GUD0_THISH Length = 550 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 124/467 (26%), Positives = 214/467 (45%), Gaps = 63/467 (13%) Query: 147 MLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSP-PLDTNLP 205 +L + ++ L G+ + TL L I H ++ PL L +QR G + P+ + Sbjct: 67 LLGIQSLFLVAGLAV-TLTLPVL--IYHHLITPLFHLRHWAQRARGGNLAARIPIPST-- 121 Query: 206 NELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQ-IDV 264 E LA+ N ++ +L +L R + V +T L + LEVLY + ++NTS+ +D Sbjct: 122 GEFAELAQDVNALTEQLQRLTREMRDEVSAQTERLEQKSHTLEVLYDVAASINTSRDLDD 181 Query: 265 HCFRHI--LQIVRDNEAAEYLELNVGENWRISEG---QPNPELPMQILPV--TMQETVY- 316 R + L+ +AA + + R+ +P+ + Q+LP+ M V Sbjct: 182 LLTRFLTSLKHALGAQAATARLVTPDGHMRLVANLGFEPDDQRCRQVLPLGKCMCGRVAD 241 Query: 317 -GELHW-----QNSHVSS------SEPLLNSVS--------------------------- 337 G+L W Q V+S EP + ++ Sbjct: 242 GGDLSWKADIRQCGRVTSDCDTQEDEPAMITIPLQHRGKTLGVYSLFLHEWPEHLNEDMD 301 Query: 338 ---SMLGR--GLYFNQAQ--KHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRS 390 + +GR G+ +A+ + Q+L ++EER +A ELHDSLAQ L+ LR ++ L + Sbjct: 302 NLLTSIGRHLGMAIEKARVDEEAQRLGIIEERTHLAHELHDSLAQTLATLRFRVRALDET 361 Query: 391 IPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAK 450 + +A + + LN A +LR L++ FR ++ +A+ +M++TL+ +T Sbjct: 362 AQDASAETRREIDQIKDVLNRANVELRALISHFRAPMEPQGFVAAVEKMVETLRRETGIS 421 Query: 451 LTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNG 510 + L L A+M+ +L+I++EA+ N KHA A + V +G V + D+G Sbjct: 422 VYLQKEWRPRKLPAEMETEVLRIVQEALCNIRKHAQAQHVRVLLRNDAEGECMVMVEDDG 481 Query: 511 IGI--GEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 +G+ E P H GL++M ERA RL G GT +S++F Sbjct: 482 LGLQPAEQGAPGEHIGLSVMTERAARLDADFRIESEPGEGTRISLAF 528 >UniRef50_Q5MJZ2 Nitrate/nitrite sensor protein n=1 Tax=Methylophaga aminisulfidivorans RepID=Q5MJZ2_9GAMM Length = 389 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 79/226 (34%), Positives = 122/226 (53%), Gaps = 7/226 (3%) Query: 334 NSVSSMLGRGLYFNQAQKHFQQLL---LMEERATIARELHDSLAQVLSYLRIQLTLLKRS 390 +S+ + L +GL QA H + L L ERA A ELHDSLAQVL YLR++ L + Sbjct: 161 SSIENTLYKGL---QAWYHSESKLKKALESERAMYAAELHDSLAQVLGYLRLKSLKLDKL 217 Query: 391 IPEDN-ATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSA 449 +D ++ + I D + AY Q REL+T+ RLT+Q +L + + ++Q++ Sbjct: 218 CQQDEFSSLKPITEDLASYTQCAYHQTRELITSSRLTMQSDNLSQGVINSIKEFEHQSAI 277 Query: 450 KLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDN 509 LD RLP L Q + +L I+RE++ N ++H++A+ V + ++I DN Sbjct: 278 VFELDNRLPLNMLSPQQSMQMLYIVRESLSNIVRHSHATHARVVLLLKTSSLIHIHIEDN 337 Query: 510 GIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 G GI +GL IM+ERA+R+G +L + GGT V +S Sbjct: 338 GTGINPEAARSDSFGLQIMKERADRIGASLVINNRPEGGTRVDLSL 383 >UniRef50_C6P056 GAF sensor signal transduction histidine kinase n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P056_9PROT Length = 407 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 119/222 (53%), Gaps = 4/222 (1%) Query: 335 SVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPED 394 S + +LG L +A + ++ L++ER +IA E+HDSLAQ L+Y R+ TLL ++ + Sbjct: 177 SFADLLGTLLEHIKATREAKREELLKERQSIANEIHDSLAQTLNYARMNTTLLSDAVRNN 236 Query: 395 NAT-AQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTL 453 N A D +AL + +R L+T FR + A L AL+ + + + Q + L Sbjct: 237 NEVMATKYTRDIDEALEIGQKTVRTLITDFRSDMDPAGLLQALQTLSEQFRRQHNIVLHC 296 Query: 454 DCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGI 513 R+ L L + ++ I+REA+ N KH+NAS A V G + + DNG+G Sbjct: 297 SIRVADLDLPLEHEIQAYHIVREALSNIAKHSNASH-ARLIVDHLCGYYVFTVEDNGVGT 355 Query: 514 GEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 P EGHYG+ IMRERA+R+GG + G GT V + F Sbjct: 356 FSP--VEGHYGIIIMRERAQRIGGEIKVESTKGLGTCVQLFF 395 >UniRef50_Q47HU2 GAF:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase, dimerization and phosphoacceptor region n=1 Tax=Dechloromonas aromatica RCB RepID=Q47HU2_DECAR Length = 646 Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 77/244 (31%), Positives = 128/244 (52%), Gaps = 8/244 (3%) Query: 319 LHWQNSHVSSSEP--LLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQV 376 L+++ S S + LL ++ LG + + + ++L + EER +A+ELHDS+AQ Sbjct: 396 LYFRRSQALSEQEIHLLETLGHHLGVAIENQRLKSREKELAVSEERNLLAQELHDSIAQG 455 Query: 377 LSYLRIQLTLLKRSIPEDNAT-AQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSA 435 L++L IQ+ LL+ S+ + A A + + ++Y +RELL FR + Q+DL SA Sbjct: 456 LAFLNIQVQLLQDSLRKGKADEAMQTAGQLREGVQESYDDVRELLVHFRTRVHQSDLDSA 515 Query: 436 LREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCV 495 + L+ + QT + + T L ++ ++ I++E++ N KHA A + V+ V Sbjct: 516 INAALEKFEGQTGIQTEFERIGATTPLPPTDEIQIMHIVQESLSNIRKHAKAKRVRVT-V 574 Query: 496 TAPDGNHTVYIRDNGIGIGEPKEP----EGHYGLNIMRERAERLGGTLTFSQPSGGGTLV 551 G V + D+GIG +P + H GL IMRERA R+GG + G G+ V Sbjct: 575 RQELGTSKVMVEDDGIGFDPQNDPNCLSDRHVGLKIMRERAHRIGGECRITSNPGQGSCV 634 Query: 552 SISF 555 +S Sbjct: 635 ILSL 638 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 78/285 (27%), Positives = 122/285 (42%), Gaps = 41/285 (14%) Query: 8 SASLARAFF--YIVLLSILSTGIALLTLASSLRD--AEAINIAGSLRMQSYRLGYDLQSG 63 S L+R +V + ++ I L L S + A AIN AGS RM++YRLG+ + G Sbjct: 5 SGKLSRKIIGVLVVFFLVATSAIGLTLLISWQLEGVAAAINDAGSQRMRTYRLGHLMARG 64 Query: 64 SPQLNAHRQL--FQQALHSPVL------------TNLNVWYVPE--AVKTRYAHLNANWL 107 L A Q+ AL V+ L P V+ R + +W Sbjct: 65 ---LEAETQVAALTAALSEEVVRFDKVQRDLQLGDPLRPLSSPRNFEVQDRLHDVEQSWR 121 Query: 108 EMNNRLSK----GD-------LPWYQANINNYVNQIDLFVLALQH-YA-ERKMLLVVAIS 154 + L + GD L + + V I+ VLA++ YA + +L V ++ Sbjct: 122 RIIRPLVESYLAGDHQARSEVLDRFDLELEPSVMGINELVLAMERSYAYDTNLLRYVQVA 181 Query: 155 LAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFD-SPPLDTNLPNELGLLAK 213 L + IF V +R V+ P++ L +R+ P+ ++ +ELG LA Sbjct: 182 LVL-LAIFGTVIL-IRFFEQLVIRPVSLLHVGMRRMTGNDLTVRVPVTSD--DELGGLAA 237 Query: 214 TFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALN 258 FNQM+ L Y SLE +E +TR L + L +LY + L+ Sbjct: 238 GFNQMAEHLEDAYGSLEQRIEAETRRLAQRNHELGILYAATSFLS 282 >UniRef50_Q3SG40 GAF Sensor Signal Transduction Histidine Kinase n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SG40_THIDA Length = 415 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 79/269 (29%), Positives = 139/269 (51%), Gaps = 12/269 (4%) Query: 307 LPVTMQETVYG--ELHWQNSHVSSSEP--LLNSVSSMLGRGLYFNQAQKHFQQLLLMEER 362 +P+ + V G L + HV + L S+S LG L + + ++ LM ER Sbjct: 145 VPLMHKNQVMGVYNLFLEEGHVVPEDVRLLFRSISEHLGIALENARLTRENMRISLMNER 204 Query: 363 ATIARELHDSLAQVLSYLRIQLTLLKRSIP-EDNATAQSIMADFSQALNDAYRQLRELLT 421 +A ++HDSLAQ L+Y +++LT+L ++ ED A A + D +A++ AY LR+L+T Sbjct: 205 QMLANQIHDSLAQTLAYAKMRLTVLSDAMRHEDYAKANRFLGDVEEAVDLAYADLRDLIT 264 Query: 422 TFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNA 481 +R + L A++E+ + + +A + + + L ++ + II+E++ N Sbjct: 265 QYRDRINPRGLVPAIQELAKGFRKKANADVDFLNLVQDVTLTPDEEIQVFHIIQESLYNI 324 Query: 482 MKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEG----HYGLNIMRERAERLGG 537 KHA A + ++ +G + V + D+G+G+ + + +GL IMRERA RL G Sbjct: 325 AKHARARHVVIT-FDLENGQYIVNVADDGVGVQKKHDESSTLGKSFGLTIMRERAARLNG 383 Query: 538 TLTFSQPSGGGTLVSISF--RSAEGEESQ 564 L GGT+V + F R+A + S+ Sbjct: 384 KLVVESRPAGGTVVRLVFPQRAASHQNSE 412 >UniRef50_C5SBA0 Histidine kinase n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SBA0_CHRVI Length = 554 Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 80/232 (34%), Positives = 117/232 (50%), Gaps = 11/232 (4%) Query: 332 LLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRS- 390 LL +V LG + ++ +L ++EER +A ELHDSLAQ L+ LR Q +L S Sbjct: 305 LLFTVGHHLGVAIAKQRSDAEAHRLSIVEERNALAHELHDSLAQTLASLRFQCRMLDDSL 364 Query: 391 ----IPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQ 446 IP A A++ +A L++A+ +LRELL +FR L + L AL ++ L + Sbjct: 365 AGCPIP---AEARNDLARIRNGLDEAHTELRELLASFRAPLDRRGLVPALAKLTQRLGRE 421 Query: 447 TSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYI 506 T + L A ++ LL+I +EA+ N KHA A + V G H + I Sbjct: 422 TGTHVLFQNDSRPFELSATEELQLLRIAQEALANIRKHAQAHTVRVLLTRESGGRHVLLI 481 Query: 507 RDNGIGIGEP--KEPEG-HYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 D+G+G P + P G GL+I+ ERA R+G L G GT V + F Sbjct: 482 EDDGVGFSPPDAQSPPGERIGLSILEERARRIGAELRIESEPGEGTRVEVVF 533 >UniRef50_Q46R21 GAF:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase, dimerisation and phosphoacceptor region n=41 Tax=Burkholderiales RepID=Q46R21_RALEJ Length = 675 Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 151/602 (25%), Positives = 246/602 (40%), Gaps = 111/602 (18%) Query: 42 AINIAGSLRMQSYRLGYDLQSGSPQLNAHRQLFQQALHSPVL-----TNLNVWYVPE--A 94 AIN AGSLRM++ R+ +L + R QAL + + ++P+ A Sbjct: 65 AINDAGSLRMRANRVAIELGLANAGQAGARDAQIQALDGTLAQLRKGNPVRPLFLPDEPA 124 Query: 95 VKTRYAHLNANWL-EMNNRLSKGDLPWYQANINNYVNQIDLFVLALQHYAERKMLLV--- 150 + + + +W E+ G Y + +V + D V+ ++H + RK L+ Sbjct: 125 IHEQLDRVAYDWQHELRPLAQAGSGVAYVQALPAFVAEADRLVMLIEHDSARKTDLLRLS 184 Query: 151 ----VAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFD-SPPLDTNLP 205 AI+ G + + L++ ++ P+ +L +R+ +F P++T Sbjct: 185 QAGLAAIACVGTVAVIYLLYL-------WIILPVLRLQDGLRRMAAREFSLRLPVETR-- 235 Query: 206 NELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVH 265 +E G L FN+M++EL LY+ L A V KT +L R LE LY + LN ++ Sbjct: 236 DEFGTLNAGFNRMAAELQDLYQDLAARVASKTAELERQNRDLETLYDMAAFLNQARDAEA 295 Query: 266 CFRHILQIVRDNEAAEYLELNVGENWRISEGQPNP--ELPMQILPVTMQE---------- 313 R L+ V A+ G + R+ + Q L LP + E Sbjct: 296 MARGFLERVMGQFDAD------GGSVRVMDAQHGKLHLLASAGLPAALAESGNCMAVDAC 349 Query: 314 -----TVYGELHWQNSHVSSSEPLLNSVSSMLGRGL-----YFNQAQK--------HFQQ 355 T G + + ++ PLL S G + ++Q+ HF Sbjct: 350 HCGDATREGVVAIADLRRTTRRPLLPQPSPCTREGFTAIAAFRIESQRGAIGTFALHFHA 409 Query: 356 LLLMEERATIARELHDSLAQ----VLSYLRIQLTLLKRSIPED-NATAQSIMADFSQALN 410 E R+L D+LAQ L +LR+ + + ++ E+ N AQ + +Q LN Sbjct: 410 ---PRELPPSDRQLLDTLAQHLGIALEHLRLSASARQLAVVEERNLVAQGLHDSIAQGLN 466 Query: 411 ---------------------------------DAYRQLRELLTTFRLTLQQADLPSALR 437 ++Y+ +RELL FR L +L A+ Sbjct: 467 FLNLQVQLLGDAVDRDDLAEAREIVPMLRHGVEESYQDVRELLNNFRSRLTPGELRPAVE 526 Query: 438 EMLDTLQNQ--TSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCV 495 E ++ + Q T A L +D L L + Q+ +L I++EA+ N KHA A+ + VS Sbjct: 527 ETVERFRRQCRTEATLVIDDHGNRLPLQPEQQLQVLFILQEALSNVRKHAMAAHVTVSLC 586 Query: 496 TAPDGNHTVYIRDNGIGIGEPKE----PEGHYGLNIMRERAERLGGTLTFSQPSGGGTLV 551 D + + D+G G +P E E H GLNIMRERA RL L G G + Sbjct: 587 HGHD--FRLVVEDDGEGF-DPAELGRDSEAHVGLNIMRERAARLHARLAIDARPGRGVRI 643 Query: 552 SI 553 + Sbjct: 644 EL 645 >UniRef50_D1C6A0 GAF sensor signal transduction histidine kinase n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C6A0_SPHTD Length = 420 Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 76/198 (38%), Positives = 108/198 (54%), Gaps = 8/198 (4%) Query: 360 EERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLREL 419 +ER I RELHD + Q L+YLR++L ++ R IP+D A AQ ++ +N + LRE Sbjct: 205 QERRRIGRELHDGIVQDLAYLRLKLEMMARIIPQDPARAQDEALQITEQINRSIAALRET 264 Query: 420 LTTFRLTLQQA-DLPSALRE----MLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQII 474 + R A L LRE M+ T +Q L LD L + L +++ ++ I+ Sbjct: 265 IGDLRRPRPPARGLTGQLRELASRMVATETSQPEVALALD-ELSGVRLAPEVERAVVGIV 323 Query: 475 REAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEP-EGHYGLNIMRERAE 533 REA+ N KHANA+ + V D H V + D+G+G+ EP EGH+GL MRE AE Sbjct: 324 REALQNIRKHANAASVRVEVQRQADDLH-VLVADDGVGMERGPEPSEGHFGLEQMRELAE 382 Query: 534 RLGGTLTFSQPSGGGTLV 551 +GG+L SG GT V Sbjct: 383 DMGGSLEIVSSSGRGTRV 400 >UniRef50_Q7NV12 Transmembrane nitrate/nitrite sensor kinase transcription regulator protein n=1 Tax=Chromobacterium violaceum RepID=Q7NV12_CHRVO Length = 632 Score = 108 bits (270), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 148/613 (24%), Positives = 256/613 (41%), Gaps = 86/613 (14%) Query: 21 LSILSTGIALLTLASSLR---DAEAINIAGSLRMQSYRLGYDLQSGSPQ--LNAHRQLFQ 75 ++++S G TLA S R A AIN GSLRM+++R Y + + +P+ L F Sbjct: 28 VALISIG---YTLALSWRLEGGAAAINDVGSLRMRTFRAAYLMSTQAPERVLRDEVAGFD 84 Query: 76 QALHSPVLTN-LNVWYVPE--AVKTRYAHLNANWLEMNNRL---SKGDLPWYQANINNYV 129 Q L + ++P+ ++ + L W L + G P Q ++ +V Sbjct: 85 QTLARLKRGDPARPLFLPDNRDIRDQERRLEQRWRNDIRPLLLAADGAQPSAQ-RLHGFV 143 Query: 130 NQIDLFVLALQHYAERK-------MLLVVAISLAGGIGIFTLVFF-----------TLRR 171 +ID V L+ E ++++A++LAG + + ++F +RR Sbjct: 144 AEIDNLVSLLERDNENHTNLLRMFQMVLIAMALAGAVTMAYMLFLMVINPVRALSDAMRR 203 Query: 172 IRH----------------QVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTF 215 +R + NQ+ +Q + T E L KT Sbjct: 204 LREGELDTRVKVDRQDELGMLAEGFNQMAERAQDLYQNLESKVAQKTREVEEQNLRLKTL 263 Query: 216 NQMSSELHKLYRSLEASVEEKTRDLHE--------------AKRRLEVLYQ----CSQAL 257 M+S LH+ R+L+ + + R L + + +L+ + Q AL Sbjct: 264 YDMTSFLHQ-QRALDETCQGFIRRLMQLTGADAANARLVDPERGKLDQIAQQGLPAEMAL 322 Query: 258 NTSQID---VHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQET 314 N I HC + Q A + E I + + + + Q Sbjct: 323 NEECIPDDACHCGEAVQQPF-----AVLRHIGELEGEEIRHCRKAGFASIAVFHIRNQRE 377 Query: 315 VYG--ELHWQNSHVSS--SEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELH 370 G L+++ V S + L+ ++ LG + + +Q + EER +A+ LH Sbjct: 378 DVGIFTLYFRQKRVLSMAEQMLIETLGQHLGVAIENQRLGAVERQFAVSEERNLMAQGLH 437 Query: 371 DSLAQVLSYLRIQLTLLKRSI-PEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQ 429 DS+AQ LS+L +Q +L+ ++ + A A+ +A + + Y +RELL FR + Q Sbjct: 438 DSIAQSLSFLNLQTQMLEDAMNSREEALARENLAFIRAGVQECYEDVRELLLNFRTRISQ 497 Query: 430 ADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASE 489 + P A+R +L + QT L+ R LD Q Q+ + I++EA+ N KHA ASE Sbjct: 498 QEFPEAVRTLLQRFEQQTRVPARLEMRGEGKPLDPQQQLQVFFILQEALSNIRKHAEASE 557 Query: 490 IAVSCVTAPDGNHTVYIRDNGIGIGEPK---EPEGHYGLNIMRERAERLGGTLTFSQPSG 546 + V + ++ IRDNG G + + H G++IM+ERA+R+ + Sbjct: 558 VEVEIDNT--ASFSMRIRDNGRGFDSGQLAAKSARHVGMSIMQERAKRIHSHIQIRSAPT 615 Query: 547 GGTLVSISFRSAE 559 GT V ++ E Sbjct: 616 QGTTVELTLPKEE 628 >UniRef50_B9L060 Putative two component system histidine kinase n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L060_THERP Length = 473 Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 91/273 (33%), Positives = 132/273 (48%), Gaps = 20/273 (7%) Query: 295 EGQPNPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGR-----GLYFNQA 349 EG P + + P+ QE V G L+ + +P S L R L A Sbjct: 181 EGHPTMRSLLGV-PIRSQEGVLGGLYLADRE--DGQPFDEHDRSRLERFATQAALAIANA 237 Query: 350 QKH--FQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSI--PEDNATAQSIMADF 405 + H L + EER IARE+HDSLAQVL Y+ +++ L+ + P+ A A+ + Sbjct: 238 RLHRRLMSLAVHEERERIAREMHDSLAQVLGYVITKVSALRELLRQPDRLAEAERHLEQL 297 Query: 406 SQALNDAYRQLRELLTTFRLTLQ-QADLPSALREMLDTLQNQTS--AKLTLDCRLPTL-A 461 +A DAY +RE + R L L ALR ++ Q+Q+ A+L ++ +L Sbjct: 298 ERAARDAYADVREAILGLRTGLAPNRSLVDALRSYVERWQDQSGVNARLIVEPSDDSLRG 357 Query: 462 LDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEG 521 L ++ LL+I++EA+ N KHA A+E+ V DG V + DNGIG G Sbjct: 358 LQPMAELQLLRIVQEALTNVRKHARATEVTVQLARL-DGTVCVRVADNGIGFDPGALERG 416 Query: 522 H---YGLNIMRERAERLGGTLTFSQPSGGGTLV 551 +GL MRERAE +GG L + G GT V Sbjct: 417 QFPRFGLATMRERAEAVGGRLRVTSLPGQGTTV 449 >UniRef50_C3K8H6 Putative two-component system, sensor kinase n=1 Tax=Pseudomonas fluorescens SBW25 RepID=C3K8H6_PSEFS Length = 403 Score = 105 bits (261), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 65/194 (33%), Positives = 101/194 (52%), Gaps = 6/194 (3%) Query: 363 ATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTT 422 +ARELHDS+AQ L YL Q L+ + E + D L+ RQ+REL+T+ Sbjct: 196 GALARELHDSVAQQLGYLSFQAHGLQSQLGE------PALQDLCTGLSQLQRQVRELITS 249 Query: 423 FRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAM 482 RLT+ L AL + + + LD RL AL + ++ +LQIIREA+ NA+ Sbjct: 250 ARLTMDGRSLRQALADSVAEFSRRCIIVFELDNRLADDALSPETELQILQIIREALTNAV 309 Query: 483 KHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFS 542 +H++A + + +G+ +V + D+GIG+ + H+GL I+RERA +G L+ Sbjct: 310 RHSHARHVRIELRQTQEGDASVSVEDDGIGLIPACDEHNHFGLAIIRERAASIGARLSIE 369 Query: 543 QPSGGGTLVSISFR 556 G V + R Sbjct: 370 AIRPHGVRVHLGLR 383 >UniRef50_A4AGB5 Putative two component system sensor kinase n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AGB5_9ACTN Length = 394 Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 77/228 (33%), Positives = 123/228 (53%), Gaps = 22/228 (9%) Query: 342 RGLYFNQAQKHF---QQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATA 398 RG +F Q Q+ F ++ L ER IARELHD LA LS + +Q + + + A Sbjct: 162 RGEHFEQFQRAFTDRREAELQAERVRIARELHDVLAHSLSQINVQAGVGLHLMHKQPEQA 221 Query: 399 QSIMADFSQALNDAYRQLRELLTTFRL--------------TLQQADLPSALREMLDTLQ 444 ++ +A + DA ++R LL R + + DL S L ++++++ Sbjct: 222 EAALASIKSSSKDALDEVRSLLGMLRTEGPAGEEDNTDSVPPVPEPDL-SRLSSLIESVR 280 Query: 445 NQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTV 504 Q ++TL C + TL +Q+ L +I++E++ N ++HANA+E +V V + +G++ V Sbjct: 281 AQ-GLEVTLSCDV-TLEAPTAVQLALYRIVQESLTNIVRHANATEASVR-VGSDEGDYLV 337 Query: 505 YIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVS 552 I DNG+GI E + EG GL MRERA+ LGGT + GG LV+ Sbjct: 338 TIADNGVGIDETVDNEGR-GLLGMRERADLLGGTFQLGTSTTGGALVT 384 >UniRef50_D1C6S2 Histidine kinase n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C6S2_SPHTD Length = 456 Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 75/228 (32%), Positives = 118/228 (51%), Gaps = 8/228 (3%) Query: 332 LLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSI 391 LL ++ LG + + + + ++EER IARE+HD +AQ+L+Y+ ++L + + Sbjct: 211 LLRAIGDTLGMAIENARLHQQVHEAAVVEERGRIAREMHDGVAQMLAYVLVKLGTVDGLL 270 Query: 392 PEDNATAQSI-MADFSQALNDAYRQLRELLTTFRLTLQQA-DLPSALREMLDTLQNQTSA 449 A + QA AY +RE + RL A L + LR LD QT Sbjct: 271 AAGAADTARAEIETMRQAAESAYTDVREQILGLRLVTDGAPGLAAWLRTYLDDFAEQTDL 330 Query: 450 KLTLDC-RLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRD 508 +TL+ LP AL ++ +++I +EA+ N KHA+A + V C T +G+ + + D Sbjct: 331 DVTLEIDDLPPGALPRASELQVIRIAQEALSNVRKHADARSVRVRC-TVEEGDLILTVAD 389 Query: 509 NGIGIGEPKEP--EG-HYGLNIMRERAERLGGTLTFSQPSGGGTLVSI 553 +G G +P +G H+GL MRERAE LGGTL G GT +++ Sbjct: 390 DGRGF-DPSSANRQGHHFGLLTMRERAESLGGTLQIESQPGSGTRITL 436 >UniRef50_C0DXB9 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DXB9_EIKCO Length = 632 Score = 101 bits (252), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 149/613 (24%), Positives = 250/613 (40%), Gaps = 127/613 (20%) Query: 40 AEAINIAGSLRMQSYRLGYDLQSGSPQLNAHRQLFQQALHSPVLTNL------NVWYVP- 92 A AIN GSLR++S+R+ ++ + ++L Q + +L N+ ++P Sbjct: 40 AAAINDIGSLRLRSFRIALLIRENAGAEEIEQRLQQ---YDSILDNVRHGDRSRPLFLPP 96 Query: 93 -EAVKTRYAHLNANWLEMNNRLS-----KGDLPWYQANINNYVNQIDLFVLALQHYAERK 146 + V R+ L+ W + N R + + + P + +++++D V A++ R Sbjct: 97 DKVVWQRFNELDQQWRQ-NIRPAFQVAYQQNRPVTDKQLQPFLSRLDNLVSAVEQTNTRY 155 Query: 147 M--------LLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFD-S 197 + L+V + ++ +F L ++ ++ PL L I GQF Sbjct: 156 ISWLRLFQSCLLVLVVMSSAFMVFLLYWW--------IIKPLQHLQQGVAAIHDGQFGIQ 207 Query: 198 PPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQAL 257 P+D + E + FNQMSS LH+LY LE V EKTRDL LE LY S+ L Sbjct: 208 IPIDHSA--EFARVDNGFNQMSSSLHQLYSHLEEEVLEKTRDLASKHHTLETLYFFSRFL 265 Query: 258 NTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQI-LPVTMQ---- 312 + +Q LQ + E + + G I + +L QI LP ++Q Sbjct: 266 SQTQTTTEAAEVFLQ-----KMLEMVAADAGSIRLIDFKRQRMDLVSQINLPDSLQTAEA 320 Query: 313 -----ETVYGE--LH--WQ--------NSHVSSSEPLLNSVSSMLG-----------RGL 344 + + G +H WQ +SH ++ NS S +G + Sbjct: 321 CQRFDDCLCGHAVVHDDWQPIQFVREPDSHAFDTD---NSECSRMGFQQLRIFKIQYKAQ 377 Query: 345 YFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRS-----IPEDNATAQ 399 F +F+Q E A EL ++L + L L+ S + E N AQ Sbjct: 378 DFGMVTLYFKQ---KEPVAMADTELWEALCSQFGVVVSNLRLIDESRQLAVLQERNLIAQ 434 Query: 400 SIMADFSQALN---------------------------------DAYRQLRELLTTFRLT 426 + +QAL + Y +RELL FR Sbjct: 435 GLHDSIAQALTFLNLQVQMLESALQNHEQEQINENLHYIKDGIQECYDDVRELLINFRTK 494 Query: 427 LQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHAN 486 + D ++ + D Q QT + L L+++ Q+ ++ I++E++ N KH+ Sbjct: 495 INNKDFTEVVQTLTDRFQRQTQIGVHLHWHGNGPQLNSEQQLQVVFILQESLSNIRKHSQ 554 Query: 487 ASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPE----GHYGLNIMRERAERLGGTLTF- 541 A+++ + D + I DNG G + E H GLNIM ERA+R+ L+ Sbjct: 555 ATQVDIRFNNRQD--FVMEIEDNGRGFNIERLKEQHSGNHVGLNIMHERAQRIRAQLSLH 612 Query: 542 SQPSGGGTLVSIS 554 S+P G T V+++ Sbjct: 613 SKP--GSTRVTLN 623 >UniRef50_Q025Z0 Histidine kinase n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q025Z0_SOLUE Length = 969 Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 71/208 (34%), Positives = 112/208 (53%), Gaps = 17/208 (8%) Query: 357 LLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQ-----ALND 411 L++EERA +ARE+HD+LAQ + QL + S+P + A+ + D ++ +L + Sbjct: 765 LVLEERARLAREIHDTLAQGFVGISSQLDAVAMSMPAEATPARGYL-DLARRMARHSLTE 823 Query: 412 AYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLL 471 A R + +L + L+ DL +A++ L ++ K+++D P L +M+ HLL Sbjct: 824 ARRSVMDLRAS---ALEGQDLAAAIQSGTLLLTAGSNVKVSVDVSGPVTELPEEMEQHLL 880 Query: 472 QIIREAVLNAMKHANASEIAVSCVTAPDGNHTVY--IRDNGIGIGEPK---EPEGHYGLN 526 +I++EAV N +KHA A I V P +Y I D+G G + GH+G+ Sbjct: 881 RIVQEAVTNVLKHAAARNIWVKIRVEP---RKLYLAILDDGRGFDQHDVFASRGGHFGVI 937 Query: 527 IMRERAERLGGTLTFSQPSGGGTLVSIS 554 MRERAERLGG L + G GT V ++ Sbjct: 938 GMRERAERLGGELRLASHPGEGTQVEVT 965 >UniRef50_Q5SJ33 Sensor histidine kinase n=3 Tax=Thermus RepID=Q5SJ33_THET8 Length = 515 Score = 98.2 bits (243), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 73/249 (29%), Positives = 122/249 (48%), Gaps = 6/249 (2%) Query: 307 LPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIA 366 LP+ +E V G L + +S P L+ ++S + + QA ++L + EER IA Sbjct: 265 LPLKAREPV-GVLVLKGEDLSRRIPFLSFLASQVALAVRNAQAYLKAEELAINEERTRIA 323 Query: 367 RELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFR-L 425 RE+HD LAQ L+++ ++L L++R +D A +A+ + L R++R + R + Sbjct: 324 REIHDGLAQSLAFMALKLDLVERLWEKDKEAALGALAEVRETLRAQIREVRRSIFALRPI 383 Query: 426 TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPT-LALDAQMQVHLLQIIREAVLNAMKH 484 L++ +LR Q ++ L LP + L ++ L ++++EA+ NA KH Sbjct: 384 DLERYGFLESLRRYAQAFAEQAGFRVQLS--LPERVGLSQASELVLFRVLQEALTNAAKH 441 Query: 485 ANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPK-EPEGHYGLNIMRERAERLGGTLTFSQ 543 A + + V + + +RDNG G P+ + G +GL MRER E GG Sbjct: 442 ARPTRVEVVLEPLGERGARLVVRDNGRGFAVPEAQGLGGFGLTQMRERVEARGGRFWVVS 501 Query: 544 PSGGGTLVS 552 G GT V Sbjct: 502 APGRGTEVG 510 >UniRef50_A4G5M3 Putative Nitrate/nitrite sensor protein narX n=1 Tax=Herminiimonas arsenicoxydans RepID=A4G5M3_HERAR Length = 672 Score = 98.2 bits (243), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 70/254 (27%), Positives = 126/254 (49%), Gaps = 8/254 (3%) Query: 312 QETVYGELHWQNSHV--SSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIAREL 369 Q + LH++ V LL ++ ++LG + + +++ + EER +A+ L Sbjct: 417 QHIGFFNLHFRQPRVFDKHEHALLEALGNLLGVAIENIRLAMREREMAISEERNLVAQGL 476 Query: 370 HDSLAQVLSYLRIQLTLLKRSIPEDN-ATAQSIMADFSQALNDAYRQLRELLTTFRLTLQ 428 HDS+AQ L++L +Q+ +L S+ + I+ +N++Y +RELL FR L Sbjct: 477 HDSIAQGLTFLNLQVQMLDDSLQKGRLKEVAEIVPALRAGVNESYEDIRELLLNFRSRLI 536 Query: 429 QADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANAS 488 + DL ++L+ +D + Q+ + L + Q+ ++ I++EA+ N KHA+AS Sbjct: 537 KGDLINSLQTTIDKFRRQSGITVNFVASGDGAPLPYEQQLQIMFIVQEALSNIRKHASAS 596 Query: 489 EIAVSCVTAPDGNHTVYIRDNGIGIGEP---KEPEGHYGLNIMRERAERLGGTLTFSQPS 545 ++ + D ++ I DNG G + E H G+NIMRERA+R+ + Sbjct: 597 KVEIRLQDNQD--FSLSIHDNGGGFDADTLLSKGESHVGINIMRERAQRIHASFEVHSTP 654 Query: 546 GGGTLVSISFRSAE 559 GT V + A+ Sbjct: 655 LQGTTVRLQLARAQ 668 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 71/290 (24%), Positives = 119/290 (41%), Gaps = 47/290 (16%) Query: 7 VSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRL--------GY 58 +S + +LL++ + G L+ A AIN AG +RMQSYRL Sbjct: 37 LSNKIVAVLIGFLLLALSAIGTTLMLSWQLEGSAAAINEAGGVRMQSYRLTSVLARLLNE 96 Query: 59 DLQSGSPQLNAHRQLF--------------QQALHSPVLTNLNVWY--VPEAVKTRYAHL 102 ++ + NA +Q+ Q+ L+ P N++ + V E L Sbjct: 97 QIEPDELRHNAEQQIRAIDATFARLQRGDPQRPLYLPPTNNIHTVFAQVVERWDVELEPL 156 Query: 103 NANWLEMNNRLSKGDLPWYQANINNYVNQIDLFVLALQHYAERKM-------LLVVAISL 155 L+ + D Y I+ +V ++ V ++ +E +M L++VA++L Sbjct: 157 AYAILQKAQPDRRPDWDRYLTQIDGFVADVNNLVQLIERDSETRMFWLRSWQLVLVAMAL 216 Query: 156 AGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLP----NELGLL 211 G + + L+F ++ P+ +L Q Q + L LP +E G L Sbjct: 217 IGTVTMIYLMFLL-------IIQPVTRLQEGMQ-----QMNGNKLGVRLPVESKDEFGQL 264 Query: 212 AKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQ 261 FNQM+ L Y +LE V +KT +L + R L +LY + L Q Sbjct: 265 TLGFNQMADRLETSYNNLENRVRQKTAELEDQNRELALLYDSAAFLQRPQ 314 >UniRef50_B4D830 Integral membrane sensor signal transduction histidine kinase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D830_9BACT Length = 725 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 67/205 (32%), Positives = 111/205 (54%), Gaps = 11/205 (5%) Query: 353 FQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKR---SIPEDNATAQSIMAD-FSQA 408 ++ ++ +ER IARELHD++ Q L+ L +QL ++ ++PE TA + Sbjct: 504 IERAVIKDERQRIARELHDTIEQELAGLSVQLRNARQRLLNMPEQAGTAIELAERMLRHC 563 Query: 409 LNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQV 468 +A +R+L + + L+Q LP AL E L L + A+L+ + R +L +++ Sbjct: 564 REEARTSIRDLRS---VALEQRGLPGALEETLAPLVEGSGARLSFEARGRARSLAGPVEI 620 Query: 469 HLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEP--KEPEGHYGLN 526 H+L+I ++AV NA++HA EI V D T+ +RD+G G +P P GH+G+ Sbjct: 621 HILRIAQQAVANAVQHAAPKEIRVHLEYLADAV-TLEVRDDGRGF-DPAAPAPRGHFGIL 678 Query: 527 IMRERAERLGGTLTFSQPSGGGTLV 551 +RERA ++ TLT G GT + Sbjct: 679 GIRERANKIHATLTVDSAPGAGTTI 703 >UniRef50_D1C657 GAF sensor signal transduction histidine kinase n=2 Tax=Bacteria RepID=D1C657_SPHTD Length = 492 Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 112/221 (50%), Gaps = 29/221 (13%) Query: 351 KHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTL---LKRSIPEDNATAQSIMADFSQ 407 + Q L + EER IARE+HDSLAQVL Y+ + L R+ ++ A+ Q + +Q Sbjct: 249 QRVQALAIAEERERIAREMHDSLAQVLGYVNTKAQAAQELLRNGQQERASEQ--IGQLAQ 306 Query: 408 ALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQN-----QTSAKLTLDCR-----L 457 A DAY +RE + R +L++ RE L+TLQ+ Q + + +D R + Sbjct: 307 AARDAYADVRENILGLRTSLERE------REFLETLQDYLQRWQDQSGIPVDFRTTPAGI 360 Query: 458 PTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIG----- 512 L L ++ LL+II+EA+ N KH+ AS V + G + DNG G Sbjct: 361 TDLRLSPLAELQLLRIIQEALANVRKHSGASRATVH-IHRSAGWIGATVEDNGSGFDPST 419 Query: 513 IGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSI 553 IG P +GL MRERA+ +GGTL G GT V++ Sbjct: 420 IGRSAFP--RFGLATMRERAQAVGGTLEIRSAPGEGTRVAV 458 >UniRef50_C1ACX8 Two-component histidine kinase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1ACX8_GEMAT Length = 758 Score = 95.5 bits (236), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 67/200 (33%), Positives = 102/200 (51%), Gaps = 6/200 (3%) Query: 359 MEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRE 418 + ER+ IARELHD+L Q + + +QL ++ I + A A + + A R+ R Sbjct: 547 LGERSRIARELHDTLLQGFTGITLQLQAVQGQIQQSPAQASDSLERILTQADGALREART 606 Query: 419 LLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREA 477 ++ R L + DL AL + + N + L + T + ++ LL+I REA Sbjct: 607 MVWDIRAPELGERDLAGALEAAVRSTINAETIALQFTVQGLTQRMAPSIESTLLRIGREA 666 Query: 478 VLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIG----IGEPKEPEGHYGLNIMRERAE 533 V NA+KH+ AS I V + P ++ + DNG G I EP G +G+ MRERAE Sbjct: 667 VANAVKHSGASVIRVQLIFGPR-EISLTVEDNGCGMDTVIPEPTSEGGRWGVRGMRERAE 725 Query: 534 RLGGTLTFSQPSGGGTLVSI 553 ++GG L+ G GT VS+ Sbjct: 726 QIGGALSIDSTKGHGTSVSV 745 >UniRef50_A1WYG6 Histidine kinase n=1 Tax=Halorhodospira halophila SL1 RepID=A1WYG6_HALHL Length = 475 Score = 95.1 bits (235), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 70/233 (30%), Positives = 111/233 (47%), Gaps = 11/233 (4%) Query: 332 LLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSI 391 +L + LG + + + Q L EER +A ELHD++AQ ++ LR+++ L+ Sbjct: 218 MLEWIGHQLGAAIARVRDEYRSHQGALQEERNLLAHELHDTVAQEVATLRLRVRQLEERA 277 Query: 392 PEDNATAQ--SIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSA 449 D TA + + D L+ Q+R ++ FR L +AL + + + + Sbjct: 278 RGDADTAALLAPLEDLRTRLDHTNDQVRTVMQQFRTQALGTPLETALSRLANRFRRDSGI 337 Query: 450 KLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDN 509 ++ L R P LAL + Q+H+ +I+ EA+ NA H A + + T P G+ + I D+ Sbjct: 338 EVRLIHRWPELALGEREQLHIHRIVEEALSNAWHHGGARNVRLQLET-PGGDLCLLIEDD 396 Query: 510 GIGI-------GEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 G G +P E GH GL MRERA LG LT G GT + + Sbjct: 397 GCGFVVDDVPDSDPAESRGH-GLRGMRERARHLGAILTVESDPGQGTTIHLRL 448 >UniRef50_B6JD37 Signal transduction histidine kinase containing PAS/PAC sensor domain n=1 Tax=Oligotropha carboxidovorans OM5 RepID=B6JD37_OLICO Length = 358 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 63/210 (30%), Positives = 104/210 (49%), Gaps = 3/210 (1%) Query: 348 QAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQ 407 +A H+ Q + EERA IARELHD L Q L+ +++ L L+ + DN + + Sbjct: 137 RALSHYLQTVREEERAHIARELHDELGQTLTAMKMDLVWLRERLSADNGALKPRVERLVG 196 Query: 408 ALNDAYRQLRELLTTFR-LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQM 466 + + L+ + + R L L + L SA+ + DT+ Q++ + L L ++ Sbjct: 197 LADRSVTDLQRIASDLRPLMLDELGLVSAVHWLTDTVAGQSNLNINLSFDREDLTYGPEV 256 Query: 467 QVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGE-PKEPEGHYGL 525 +I++EA+ N ++H+ A + ++ A D H + I D+G G+ P H+GL Sbjct: 257 STAAFRIVQEALTNIVRHSGARHVTITACHAEDELH-IEIVDDGCGLPPTAASPRLHHGL 315 Query: 526 NIMRERAERLGGTLTFSQPSGGGTLVSISF 555 M ERA LGG++ GGGT V S Sbjct: 316 LGMHERANMLGGSVAVESAPGGGTRVRASL 345 >UniRef50_B8CZJ7 Integral membrane sensor signal transduction histidine kinase n=1 Tax=Halothermothrix orenii H 168 RepID=B8CZJ7_HALOH Length = 352 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/211 (27%), Positives = 118/211 (55%), Gaps = 5/211 (2%) Query: 348 QAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPE-DNATAQSIMADFS 406 + +K ++L ++EER IARELHDS++Q L + + L L+ I E D+ + + D Sbjct: 141 ELEKENKKLAIIEERNRIARELHDSVSQNLFGINLNLNTLEVLIDEGDHDRVRKTVEDLK 200 Query: 407 QALNDAYRQLRELLTTFR-LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQ 465 + + + ++R ++ + + L++ D AL +++ +N+ + K+T ++++ Sbjct: 201 KMVQEVQTEMRLMIYELKPVHLREKDFFEALESLVELYRNRYNLKITTHLNGNENRVESE 260 Query: 466 MQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIG--IGEPKEPEGHY 523 +Q+ L ++ +EA+ N +KHA+A +++++ +G T+ I+DNG G +G K G + Sbjct: 261 VQLALYRVAQEALNNIVKHADADKVSITLGIGNNG-ITMAIKDNGKGFNVGRVKAGSGRF 319 Query: 524 GLNIMRERAERLGGTLTFSQPSGGGTLVSIS 554 G++ M++R +GG G GT V +S Sbjct: 320 GISGMKDRVNDVGGDFDIESQPGQGTTVKVS 350 >UniRef50_Q67L27 Two-component sensor histidine kinase n=1 Tax=Symbiobacterium thermophilum RepID=Q67L27_SYMTH Length = 536 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 77/278 (27%), Positives = 133/278 (47%), Gaps = 23/278 (8%) Query: 296 GQPNPEL-----------PMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGL 344 G+P+P L P ++ P + Q + G + V L N + + L Sbjct: 244 GRPDPHLAPLPLRSFTAIPYRLGPRS-QGVLLGASRRPGALVDDDLRLFNHLGAYLSTAA 302 Query: 345 YFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDN-ATAQSIMA 403 Q + Q L ++EER +A E+HD + QVL++L ++L +++R++ +D+ ATA +A Sbjct: 303 ENAQLLRDMQHLAVLEERQRLAGEIHDHIGQVLTFLGMRLHVVERALAQDDLATAAEEVA 362 Query: 404 DFSQALNDAYRQLRELLTTFR-LTLQQADLPSALREMLDTLQNQTSAKLTLDC-RLPTLA 461 + A+ ++R L R ++ L R++LD +T + ++ P L Sbjct: 363 GLRGVVASAHEEIRASLYDLRNDAPARSPLMDRWRQLLDAFAARTGIAVRIETPHRPMLV 422 Query: 462 LDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIR--DNGIGIGE--PK 517 L + L +I++EA+ NA +H+ AS + V T+YI D+G G P Sbjct: 423 LPPTTEAQLTRILQEALANAQQHSGASTVTVQARVE---RATLYITIADDGCGFDPSVPP 479 Query: 518 EPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 +P H+GL +MRERA+ +G L G GT +S+ Sbjct: 480 DPH-HFGLALMRERAQAIGARLHIESARGRGTRISLEM 516 >UniRef50_C1F9F5 Two component regulator propeller/histidine kinase domain protein n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F9F5_ACIC5 Length = 1025 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 70/213 (32%), Positives = 110/213 (51%), Gaps = 20/213 (9%) Query: 353 FQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDA 412 FQ +L ER IARE+HD+LAQ + + +QL ++ R +P NAT + AL+ A Sbjct: 814 FQAVL--RERTRIAREIHDTLAQGFAAVSVQLEVVSRLLP--NATEGA-----RHALDTA 864 Query: 413 YRQLRELLTTFRLTL--------QQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDA 464 R L R ++ +Q DL + LR++ D L + K L+ L Sbjct: 865 RSLARSSLQDARTSIWDLRSQSSEQEDLATRLRKLADHLCAPANIKAQLEVNGAYRPLTP 924 Query: 465 QMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGI--GEPKEPEGH 522 +++ L +I +EA++NA++H+ + IA+ ++ + + +RDNG G P GH Sbjct: 925 EVETELTRIAQEAIVNAVRHSETASIALR-LSFHERQIELSVRDNGRGFSGAPPAARPGH 983 Query: 523 YGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 YG+ M ERAER+GG LT G GT V ++ Sbjct: 984 YGITGMHERAERIGGKLTIESRPGEGTEVHLTL 1016 >UniRef50_C6J152 Histidine kinase dimerization and phosphoacceptor region n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J152_9BACL Length = 360 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 61/198 (30%), Positives = 107/198 (54%), Gaps = 3/198 (1%) Query: 358 LMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLR 417 ++EER +ARELHD+++Q L + + T + R++ +D AQ + + + A ++R Sbjct: 144 IVEERQRLARELHDAVSQQLFAISMTATAVGRTLEKDFDKAQRQVELIEEMASVAQSEMR 203 Query: 418 ELLTTFR-LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIRE 476 LL R + L+ +L L +++ L+ + LTL+ L L ++ HL +II+E Sbjct: 204 ALLLHLRPVYLEGKELSQGLSDLVKELKTKVPMDLTLEID-EDLNLGKGIENHLFRIIQE 262 Query: 477 AVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLG 536 A+ N ++HA A ++ + + V +RDNGIG + + YGL+ M+ER +G Sbjct: 263 AMSNTLRHAKADKMEIRIHHRGEAV-KVTLRDNGIGFELDDKKQASYGLSTMQERIHEIG 321 Query: 537 GTLTFSQPSGGGTLVSIS 554 G++ F G GT + IS Sbjct: 322 GSIQFITAPGKGTRIEIS 339 >UniRef50_C0ZDW3 Probable two-component sensor histidine kinase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZDW3_BREBN Length = 313 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 61/199 (30%), Positives = 105/199 (52%), Gaps = 9/199 (4%) Query: 358 LMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLR 417 ++EER IARELHD +AQ L +L Q++ ++R D + ++ F ++++ +R Sbjct: 116 ILEEREQIARELHDGIAQSLFFLNAQVSRIERMKQVD----ELLIDKFKKSVHHTNDYVR 171 Query: 418 ELLTTFRLTLQQADLP--SALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIR 475 + + R +P + ++D L+ +T+ + + +P L + +V LL I+R Sbjct: 172 QAIANLRYAPDVNRIPWLQGVESLIDELRRETNMQFETEWEIPESLLSTKDKVELLAIVR 231 Query: 476 EAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEG-HYGLNIMRERAER 534 EA+LN KHANA+ + V + +G I D+G G KE G YGL +MR+RA Sbjct: 232 EALLNIHKHANATCVRVHALANKNG-WICQIIDDGKGFDLEKEMGGSSYGLKMMRDRANN 290 Query: 535 LGGTLTFSQPSGGGTLVSI 553 + L + + G T+V+I Sbjct: 291 MSWNLNYERKD-GETMVTI 308 >UniRef50_A4AC75 Two-component system sensor kinase n=1 Tax=Congregibacter litoralis KT71 RepID=A4AC75_9GAMM Length = 366 Score = 91.7 bits (226), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 103/224 (45%), Gaps = 24/224 (10%) Query: 342 RGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSI 401 R Y Q + +L + EER IARELHD +A LS + +Q K D A Sbjct: 144 RAQYLEQRKNREAELAVTEERGRIARELHDIVAHQLSLMTVQAGAAKTVGQSDPIAAMEA 203 Query: 402 MADFSQALNDAYRQLRELLTTFR-------LTLQQ--ADLPSALREMLDT---LQNQTSA 449 M A A +++R LL R L Q ADLPS + E+ T +Q QT Sbjct: 204 MEAVEGAGRQALKEMRHLLHVLRRDENDSSLVPQPGCADLPSLIAEVNATGVAVQLQTGG 263 Query: 450 KLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDN 509 +L+ L A++ + + +I++EA+ N +KHA V + G V I D+ Sbjct: 264 RLS--------GLPARVDLSVYRIVQEALTNVLKHAGKQVFVTVTVASSAGGVEVSICDS 315 Query: 510 GIGIGEPKEPEGH-YGLNIMRERAERLGGTLTFSQPSGGGTLVS 552 G G P E G YG+ MRERAE LGG L S GG VS Sbjct: 316 G---GGPGETSGRGYGIAGMRERAEMLGGWLRTGPGSNGGFEVS 356 >UniRef50_C9RWH5 Integral membrane sensor signal transduction histidine kinase n=13 Tax=Bacillaceae RepID=C9RWH5_GEOSY Length = 344 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 56/199 (28%), Positives = 103/199 (51%), Gaps = 4/199 (2%) Query: 357 LLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQL 416 +L EER +ARELHDS++Q L + ++ + ++P D+ + + Q ++ + ++ Sbjct: 138 ILSEERTRLARELHDSVSQQLFAASMMMSAVMETMPPDDERHRKQLKMVEQMIHQSQLEM 197 Query: 417 RELLTTFR-LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIR 475 R LL R + L+ L + E+L L + L + ++ ++LD ++ HL +I++ Sbjct: 198 RALLLHLRPVHLKGKSLQEGMNELLTELAGKVP--LEMKWKIEDISLDKGVEDHLFRILQ 255 Query: 476 EAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERL 535 E++ N ++HA A + V + DG + + D+G+G + G YGL M ERA + Sbjct: 256 ESLSNTLRHAKAKSLEVLLIER-DGFAILRVTDDGVGFDVERSKSGSYGLQHMYERAAEI 314 Query: 536 GGTLTFSQPSGGGTLVSIS 554 GG L G GT + + Sbjct: 315 GGMLKIVSLKGQGTRLEVK 333 >UniRef50_Q74GJ3 Sensory box histidine kinase n=1 Tax=Geobacter sulfurreducens RepID=Q74GJ3_GEOSL Length = 830 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 63/212 (29%), Positives = 107/212 (50%), Gaps = 9/212 (4%) Query: 352 HFQQLLLMEE--RATIARELHDSLAQVLSYLRIQLTLL-KRSIPEDNATAQSIMADFSQA 408 + ++L MEE R +A ELHD + + L+ L + +++ R + + ++ + D + Sbjct: 616 YTRRLTEMEEDLRKKLAAELHDEIGRDLTALNLNFSVIGNRLVQGPDGCLKARIEDTERL 675 Query: 409 LNDAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQ 467 + D R +R L R L LP+ALR D +T ++T+ + A+ + Sbjct: 676 IEDISRTVRGLTAKLRPPVLDDYGLPAALRWHADLFSRRTGIEVTVRGADSVPRMPAEKE 735 Query: 468 VHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGI----GEPKEPEGHY 523 + L +I++EA+ N KHANA + VS + DG + + D+GIG P + Sbjct: 736 IALFRIVQEALTNCSKHANAGNVKVS-LDHGDGRVRLSVVDDGIGFAPESASPTPAGSGW 794 Query: 524 GLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 GL IMRERAE +GGT + G GT++++ Sbjct: 795 GLTIMRERAELIGGTFRLNTAPGKGTVLTVEI 826 >UniRef50_Q1D524 Sensor histidine kinase n=2 Tax=Cystobacterineae RepID=Q1D524_MYXXD Length = 427 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 101/206 (49%), Gaps = 6/206 (2%) Query: 350 QKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQAL 409 Q ++L ++EER +ARE+HD L LS + IQ + + A + + + + Sbjct: 223 QGDLKELAVVEERNRMAREIHDGLGASLSSMIIQSEYIL-----NLAREEGLREEIRELK 277 Query: 410 NDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVH 469 A + EL + R+ + +L L + T + +T + + LD +Q+ Sbjct: 278 LTAEESIEELRRSLRMMREDFELAQGLEDYAKTFRERTGLDIRFERTGLQRKLDPDVQLA 337 Query: 470 LLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMR 529 L +I++E++ NA+KHA A + V + D + V +RD+G G + P GHYGL MR Sbjct: 338 LFRILQESLSNAVKHAEAKGVQVRLDFSEDRVNLV-VRDDGKGFDPSRTPRGHYGLLNMR 396 Query: 530 ERAERLGGTLTFSQPSGGGTLVSISF 555 ERA +LGG L G G V+ S Sbjct: 397 ERAMKLGGQLIVDSSPGAGAQVAFSL 422 >UniRef50_B4CYV7 Histidine kinase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CYV7_9BACT Length = 694 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 68/213 (31%), Positives = 109/213 (51%), Gaps = 14/213 (6%) Query: 350 QKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQAL 409 ++ Q+ +EERA +ARE HD+L Q + +R+QL +K E A A+ + + Sbjct: 477 RQKIQREGALEERARLAREFHDTLEQQFTGIRLQLEAVKSKFGEAPAEAEEYLDVARSLM 536 Query: 410 NDAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTS-AKLTLDC---RLPTLALDA 464 ++ + R + R L+Q DL +AL + + N T A++ + RLP Sbjct: 537 RHSHDEARRTVWDLRADVLEQHDLSTALEKTVAGATNGTPRARVAVSGQPRRLP-----G 591 Query: 465 QMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGE---PKEPEG 521 M+ HLL+I +EAV NA+KHA ASE+ + PD + +RD+G G G Sbjct: 592 WMENHLLRIGQEAVTNAIKHARASEVHIELDYRPD-VLQLRVRDDGCGFDANDTSASDRG 650 Query: 522 HYGLNIMRERAERLGGTLTFSQPSGGGTLVSIS 554 H+GL M+ERAE++ G L GT++ ++ Sbjct: 651 HFGLLGMKERAEKIRGRLQVLSTLAAGTMIEVT 683 >UniRef50_A9B1S5 Multi-sensor signal transduction histidine kinase n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B1S5_HERA2 Length = 665 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 79/271 (29%), Positives = 132/271 (48%), Gaps = 23/271 (8%) Query: 299 NPELPMQIL---PVTMQETVYG---------ELHWQNSHVSSSEPLLNSVSSMLGRGLYF 346 +P +P Q L P++++E V G + + + +E L S + + + + Sbjct: 398 SPTIPYQTLLALPLSIKEQVLGVVLVATPDRDAPFGPQQLVLAEGLATSAAIAIEQARLY 457 Query: 347 NQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFS 406 +QA++ Q EER+ +ARELHDS+ Q L + + + + + A + + Sbjct: 458 DQARRAAQ----AEERSRLARELHDSVTQTLFSMTLTAEAARAQVERNPVRAATQIDRLK 513 Query: 407 QALNDAYRQLRELLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQ 465 A + + ++RELL R T LQ+ + +LR+ + +L Q A + L+C L Sbjct: 514 AAAHQSLGEMRELLLQLRPTPLQEHGIIKSLRDHIASLNAQEVA-INLECEGEDSVLSPA 572 Query: 466 MQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPK--EPEG-H 522 L +I +EA+ NA++HA A+ + VS A T+ ++DNG G +P E G H Sbjct: 573 NAAGLYRIAQEAIANALRHAQATNVRVSFSFASKST-TLMVKDNGCGF-DPDLLERSGRH 630 Query: 523 YGLNIMRERAERLGGTLTFSQPSGGGTLVSI 553 GL M ERA LGGTL G GT +++ Sbjct: 631 LGLTSMAERAGELGGTLDVQSVVGEGTCLTV 661 >UniRef50_UPI0001B561AB two-component system sensor kinase n=1 Tax=Streptomyces sp. C RepID=UPI0001B561AB Length = 414 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 68/218 (31%), Positives = 109/218 (50%), Gaps = 14/218 (6%) Query: 350 QKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQAL 409 Q+ + +++ER IARELHD +A +S + +Q L D ATA++ + + A Sbjct: 169 QRERARRAVVDERIHIARELHDVVAHHMSVISVQAGLADYVFASDPATARAALTTIAGAS 228 Query: 410 NDAYRQLRELLTTFRLTLQQADLPSA--------LREMLDTLQNQTSAKLTLDCRLPTLA 461 DA +LR LLT R+ L + D PS+ L + + + +A +T+D R + Sbjct: 229 RDALGELRRLLTVLRVDLGREDDPSSAPLGPLPELSRVEELARRVGAAGVTVDIRTTGVP 288 Query: 462 --LDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEP--K 517 LD ++V ++++EA+ N +KHA + + V D T+ +RD+G G G+P Sbjct: 289 RKLDPGLEVCAYRVLQEALTNVVKHARCARVEVRIAYLAD-RLTISVRDDG-GEGKPAIA 346 Query: 518 EPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 P +GL MRER GG L+ GG V +S Sbjct: 347 APGSGHGLIGMRERVRICGGRLSAGPLGEGGFEVRLSL 384 >UniRef50_Q47FQ9 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, dimerization and phosphoacceptor region n=1 Tax=Dechloromonas aromatica RCB RepID=Q47FQ9_DECAR Length = 373 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 71/217 (32%), Positives = 112/217 (51%), Gaps = 15/217 (6%) Query: 353 FQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSI----PEDNATAQSIMADFSQA 408 F Q + EER IARELHD L Q L+ LRI L + R PE A A + A + Sbjct: 166 FLQSVREEERTAIARELHDELGQALTALRIDLAWINRQCKTLGPEVQARADASCAIVERT 225 Query: 409 LNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQV 468 + DA R++ E L L + L +A+ +++ + L A+D ++ + Sbjct: 226 I-DAVRRISEGLRPGMLDV--LGLTAAIEYLVEQFAKRNDIPCYLTSDRDEFAIDDRVSI 282 Query: 469 HLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGI--GEPKEPEGHYGLN 526 + ++I+EA+ N ++HA+A+ + ++ ++ + V IRDNGIG+ GEPK+ +GL Sbjct: 283 AVFRLIQEALTNVVRHASATRVDIT-LSQDNNTICVDIRDNGIGLATGEPKQ---GFGLL 338 Query: 527 IMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEES 563 MRER LGGT+ GT + F +GE+S Sbjct: 339 GMRERVTMLGGTIDID--GSRGTRILARFPLFKGEKS 373 >UniRef50_Q3M1D8 Serine/threonine protein kinase and signal transduction histidine kinase with GAF and PAS/PAC sensor n=9 Tax=Bacteria RepID=Q3M1D8_ANAVT Length = 2361 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 75/254 (29%), Positives = 127/254 (50%), Gaps = 12/254 (4%) Query: 305 QILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERAT 364 QIL V + G W ++ ++ P+ + L R + AQK ++ ++EER Sbjct: 2113 QILTVEYGAFLNGREMWFSARIA---PISHDQVIWLVRDI---TAQKQAEEASILEERNR 2166 Query: 365 IARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFR 424 +ARE+HD+LAQ + + Q+ K+ + +D AQ+ + + + R + R Sbjct: 2167 MAREIHDTLAQAFTGILAQVGAAKQVLTDDVEAAQAHLDLIKELARTGLTEARRSVIALR 2226 Query: 425 LT-LQQADLPSALREMLDTLQ-NQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAM 482 L++ L SAL ++ ++ T L + +L +++ +LL+I +EA+ NA+ Sbjct: 2227 PQLLEEGSLQSALHRLVAQIRAAATDTTLYYEIEGAVYSLPTEVENNLLRIGQEALTNAI 2286 Query: 483 KHANASEIAVSCVTAPDGNHTVYIRDN--GIGIGEPKEPEGHYGLNIMRERAERLGGTLT 540 ++ANA EI V V D + +RDN G G+G EG +GL M ERAER+G LT Sbjct: 2287 RYANADEIRVELVYDRD-QFCLRVRDNGQGFGVGSISASEG-FGLLGMSERAERIGAQLT 2344 Query: 541 FSQPSGGGTLVSIS 554 G GT + ++ Sbjct: 2345 IRSQPGQGTEIIVT 2358 >UniRef50_Q1H0K4 Multi-sensor signal transduction histidine kinase n=2 Tax=Methylophilaceae RepID=Q1H0K4_METFK Length = 573 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 65/222 (29%), Positives = 111/222 (50%), Gaps = 11/222 (4%) Query: 341 GRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLL----KRSIPEDNA 396 R L N+ H Q + +ER ++ARELHD L Q ++ ++ + K+ +P + Sbjct: 350 ARKLEENRQLTHLIQRHIEDERRSLARELHDELGQYVTAIKTFAVAIANKAKQEMPSIES 409 Query: 397 TAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTS-AKLTLD 454 +AQ+I++ A N Y + ++ R +L L ALR+ + Q Q S L+ Sbjct: 410 SAQTIVS----AANHIYDGMHNIIRHLRPGSLDNLGLSEALRDAVAGWQAQNSNVTFNLE 465 Query: 455 CRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIG 514 + L + ++L +I++E+V NA++HA A I + +GN T+ I+DNGIG+ Sbjct: 466 LQGKLDLLGESLNINLYRIVQESVTNALRHAQADRIDIRLSRDENGNLTLLIKDNGIGMN 525 Query: 515 EPK-EPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 + H+GL MRER + L G G GT ++++ Sbjct: 526 MCNVDQNRHFGLLGMRERVQALYGNFAIDSQPGQGTAITVTI 567 >UniRef50_D1CF52 Two component transcriptional regulator, LuxR family n=2 Tax=Bacteria RepID=D1CF52_THET1 Length = 1648 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 67/204 (32%), Positives = 106/204 (51%), Gaps = 14/204 (6%) Query: 360 EERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSI-MADFSQALNDAYRQLRE 418 +ERA IARE+HD+LAQVL Y+ + + R + + + + + A AY LRE Sbjct: 1223 QERARIAREMHDTLAQVLGYVNTKAQAVYRMLSHGSVEEAVVQLEQLASAARSAYADLRE 1282 Query: 419 LLTTFRLTLQ-QADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDA---QMQVHLLQII 474 + R ++ + L +L + + T + Q+S K+ L+ P + LDA ++ LL+II Sbjct: 1283 DILGLRTSVDSERRLKDSLLDYIRTWEQQSSIKVELEID-PDVDLDAIPSSAEIQLLRII 1341 Query: 475 REAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGI-----GEPKEPEGHYGLNIMR 529 +E++ N KH+NAS V D V I D+G G G P +G+++M+ Sbjct: 1342 QESLANVRKHSNASSAKVK-FEEVDNWLQVTIEDDGQGFDVHDQGRSDFP--RFGISMMK 1398 Query: 530 ERAERLGGTLTFSQPSGGGTLVSI 553 ERAE +GG L + G GT V + Sbjct: 1399 ERAEAIGGLLCINSEPGVGTTVIV 1422 >UniRef50_C1XM57 Signal transduction histidine kinase, COG4585 n=1 Tax=Meiothermus ruber DSM 1279 RepID=C1XM57_MEIRU Length = 430 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 60/199 (30%), Positives = 104/199 (52%), Gaps = 5/199 (2%) Query: 358 LMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLR 417 ++EER +ARE+HD+LAQ + + +QL + + E A+A + QA + + R Sbjct: 222 ILEERQRLAREIHDTLAQGFASIVVQLEAAEMA-SEHEASATHYLEQARQAAREGLSEAR 280 Query: 418 ELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIRE 476 ++ R L+ LP AL+ +L Q ++ + L +++V LL+I +E Sbjct: 281 RMVWALRPEILENTSLPEALQRLLQRWQQESGVRTQFTLTGTPRPLHPELEVGLLRIAQE 340 Query: 477 AVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLG 536 A+ N KHA A ++ ++ D + ++D+G+G+ P G +GL +MRER E LG Sbjct: 341 ALTNIRKHAKARHANLT-LSYLDDLVLMDVQDDGVGLQAPTT--GGFGLRLMRERVESLG 397 Query: 537 GTLTFSQPSGGGTLVSISF 555 G +T G GT +++S Sbjct: 398 GQMTLESEPGMGTTLAVSL 416 >UniRef50_UPI00017449FC GAF domain protein n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017449FC Length = 690 Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 68/199 (34%), Positives = 101/199 (50%), Gaps = 5/199 (2%) Query: 358 LMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLR 417 + +ER IARELHD++ Q L+ L IQL ++ I A + Q L + R Sbjct: 477 VKDERERIARELHDTIEQELAGLSIQLRNARQRIATAPEQASRSLGLAEQMLRHCREEAR 536 Query: 418 ELLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIRE 476 + R T L+ L AL EML L + A +L+ + L ++HLL+I E Sbjct: 537 TSIRDLRSTALELRGLHGALEEMLTPLATEAGAHFSLEVKGEPYHLAGPSEIHLLRIAHE 596 Query: 477 AVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIG-EPKEPEGHYGLNIMRERAERL 535 AV NA +HA+ I V+ P+ ++ I D+G G + P GH+G+ +RER +L Sbjct: 597 AVANAARHASPRLIQVTIEFTPE-TVSLEIEDDGCGFDTDAPAPRGHFGMLGIRERVNKL 655 Query: 536 GGTL-TFSQPSGGGTLVSI 553 GTL T S+P G GT + + Sbjct: 656 QGTLQTHSEP-GKGTRIHV 673 >UniRef50_B4D2I1 Histidine kinase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D2I1_9BACT Length = 670 Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 63/208 (30%), Positives = 102/208 (49%), Gaps = 5/208 (2%) Query: 350 QKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQAL 409 + ++ + EER IARELHDSLAQ L+ + IQL + + + Q ++ + Sbjct: 441 RSQLERAAVSEERTRIARELHDSLAQHLASITIQLDAVAVRLKTEEGDTQQLLETAREMA 500 Query: 410 NDAYRQLRELLTTFR-LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQV 468 + Q R + R TL + L +A+ E++ L + L + L + Sbjct: 501 AHSMDQTRLAIWDLRSPTLARDGLVAAIHEVVQPLTERRGTLLRVTLEGEVRRLGGGAEN 560 Query: 469 HLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKE---PEGHYGL 525 HLL+I++EA NA++H + ++I ++ + G V I DNG G P P H+GL Sbjct: 561 HLLRIVQEASANALQHGSPTQIEIAVLFRAQG-LMVTIHDNGAGFRVPSPGALPVAHFGL 619 Query: 526 NIMRERAERLGGTLTFSQPSGGGTLVSI 553 M ERA+++GG L G GT +S+ Sbjct: 620 RGMFERAKKIGGQLVLESEPGAGTTISV 647 >UniRef50_C4DRB4 Signal transduction histidine kinase, COG4585 n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DRB4_9ACTO Length = 422 Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 103/203 (50%), Gaps = 6/203 (2%) Query: 354 QQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAY 413 +Q + ERA +AR++HD++AQ L+ + QL + + P+D A I D ++ D+ Sbjct: 218 RQAGVTAERARLARDMHDTVAQGLAGIVTQLETAE-ADPDDTARRLRIARDLAR---DSL 273 Query: 414 RQLRELLTTFRLTL-QQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQ 472 ++R + R L ADL AL +D +++ T + LDA + +L+ Sbjct: 274 VEVRRSVAALRPALLDDADLAEALAREVDAWRHRNDIAATFTVTGTPVPLDAAVDEAVLR 333 Query: 473 IIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERA 532 + +EA+ N +HA AS + V+ D + IRD+G G EP +GL MR+R Sbjct: 334 VAQEALSNTARHAKASRLGVTLSYMED-MLVLDIRDDGEGFAVDAEPRQGFGLTAMRQRV 392 Query: 533 ERLGGTLTFSQPSGGGTLVSISF 555 E+L G++ G GT VS+S Sbjct: 393 EQLDGSVHIESKPGAGTAVSVSL 415 >UniRef50_D2R949 MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R949_9PLAN Length = 1238 Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 65/210 (30%), Positives = 109/210 (51%), Gaps = 7/210 (3%) Query: 347 NQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFS 406 Q ++ ++ +E+R I ++LHDS++Q L+ L + L ++ D A ++ Sbjct: 1022 KQLEREVVEIASLEQR-RIGQDLHDSVSQELTALSMLAGDLAETLRTDPLNASDLVERVV 1080 Query: 407 QALNDAYRQLRELLTTF-RLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQ 465 Q L+ + + LR ++ +++ L +AL ++ Q + T DC P L D Sbjct: 1081 QGLHRSRQDLRAVMRGLCPVSVDSEGLMAALSDLASRTQLEGKLSCTFDCPKPVLVEDNL 1140 Query: 466 MQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEP-EGHYG 524 + HL I EAV NA+KHA I +S ++ D T+ ++D+GIGI P +P +GH G Sbjct: 1141 IATHLYLIAHEAVHNAIKHAQCKNIRISVESSED--LTLRVQDDGIGISIPDQPTQGHSG 1198 Query: 525 LN--IMRERAERLGGTLTFSQPSGGGTLVS 552 L IMR RA + TL+F + GT+V+ Sbjct: 1199 LGLRIMRNRAAIIRATLSFEKVLPAGTMVT 1228 >UniRef50_B5JLS1 Histidine kinase domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JLS1_9BACT Length = 687 Score = 88.6 bits (218), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 62/200 (31%), Positives = 101/200 (50%), Gaps = 8/200 (4%) Query: 358 LMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFS----QALNDAY 413 +++ER +ARE+HD+LAQ + + IQL K +P A +S + S ++L DA Sbjct: 486 MIKERMRLAREIHDNLAQGFTAVSIQLETAKHKLPAAAAPVRSHLDQASALVRESLADAR 545 Query: 414 RQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQI 473 R ++ L +L AD +AL + + T + + L A+ + L+ I Sbjct: 546 RSIQGLR---HESLSNADFLAALERIAGRVLKDTPIAFQQELKGDVARLGAEAENELIAI 602 Query: 474 IREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAE 533 EA+ N +KHA A I +SC + + T+ I D+GIG + + P +GL M+ERA Sbjct: 603 ATEAITNTVKHAQAKRIQISCQIH-EAHGTLSISDDGIGFRKDQPPPSGFGLQGMQERAA 661 Query: 534 RLGGTLTFSQPSGGGTLVSI 553 ++ TLT GT ++I Sbjct: 662 KIHATLTLDSSPKQGTRITI 681 >UniRef50_B4WTJ3 Histidine kinase domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WTJ3_9SYNE Length = 413 Score = 88.6 bits (218), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 64/198 (32%), Positives = 105/198 (53%), Gaps = 10/198 (5%) Query: 361 ERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALN-DAYRQLREL 419 ERA IAR++HDSL L+ L IQL L +R + E N+T D S+ L+ + +++R Sbjct: 213 ERARIARDIHDSLGHTLTSLDIQLELAQR-LYERNSTGARQAIDISKLLSGQSLQEVRRA 271 Query: 420 LTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVL 479 +TT R + DL +A+ +++ L++ ++ + LP L L Q++ II+E + Sbjct: 272 VTTLR--EEAFDLNAAIANLVEPLKSDSNLVVENKLTLPKLPLQTSHQLYC--IIKEGLE 327 Query: 480 NAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIG---EPKEPEGHYGLNIMRERAERLG 536 N +HA A I + P+ N VYI D+G+G E +GL M+ER++ +G Sbjct: 328 NIRRHAQARVIGLYSWATPE-NIVVYIEDDGVGFDVGLSATESGSRFGLRGMQERSQSIG 386 Query: 537 GTLTFSQPSGGGTLVSIS 554 G + S GT + I+ Sbjct: 387 GCMKIDSASKQGTRIQIT 404 >UniRef50_C6J7D3 ATP-binding region ATPase domain-containing protein n=2 Tax=Bacillales RepID=C6J7D3_9BACL Length = 356 Score = 88.2 bits (217), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 65/208 (31%), Positives = 106/208 (50%), Gaps = 8/208 (3%) Query: 358 LMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNAT-AQSIMADFSQALNDAYRQL 416 ++EER +AR+LHD+++Q L + + + L + + E+NAT A++++ Q N A +Q+ Sbjct: 139 VLEERRRLARDLHDTVSQQLFAIHMAASSLPK-VLENNATQAETVLNQLIQMSNTAQKQM 197 Query: 417 RELLTTFR-LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIR 475 R L+ R + L L AL + Q K D + +A+ + L II+ Sbjct: 198 RALIAQLRPMELVGKSLAEALDQWFPDYCRQNGLKGIKDMDIQGDMSEAK-EHQLFLIIQ 256 Query: 476 EAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERL 535 EA+ N +KHA AS +++S P + I D+G G + +G YGL M+ERAE+L Sbjct: 257 EAMANIVKHAGASMVSLSLREGPR-QVVLSISDDGQGFSSTYQKQGSYGLTTMKERAEKL 315 Query: 536 GGTLTFSQPSGGGTLVSI---SFRSAEG 560 GG G GT + + F +G Sbjct: 316 GGNAEIISKPGAGTTIRVHIPKFEEGKG 343 >UniRef50_C6CWJ2 Histidine kinase n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CWJ2_PAESJ Length = 281 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 69/232 (29%), Positives = 112/232 (48%), Gaps = 16/232 (6%) Query: 342 RGLY--FNQAQKHFQQLLL----MEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDN 395 RGL+ Q Q+ Q+ + ++R +ARELHD ++Q L L ++L L+ E Sbjct: 55 RGLFGKLEQTQEALQRERVSKASFQQREQLARELHDGISQSLFLLSVKLDKLEHM--ELG 112 Query: 396 ATAQSIMADFSQALNDAYRQLRELLTTFR---LTLQQADLPSALREMLDTLQNQTSAKLT 452 A+ Q + Y +R+ + + + + + L + + D LQN + + Sbjct: 113 NDARDTTVQIRQTVKHVYEDVRQSIANLQSPAVVVDDSWLTAIHGAVNDLLQN-SGVRAK 171 Query: 453 LDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIG 512 LD +LP L + V L IIREA++N K+A A+E+ V D + I+DNG+G Sbjct: 172 LDWQLPEGVLSNKQLVELQSIIREALMNVRKYAQATEVQVISRQHGDEDFVCEIKDNGVG 231 Query: 513 IGEPK--EPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEE 562 +P + + YG+ +MR+RAE++G G GT V I EG E Sbjct: 232 -ADPSQIDAKDRYGIRMMRDRAEQMGWLFDIKSAVGEGTTVRIQ-SGGEGNE 281 >UniRef50_B8HT67 GAF sensor signal transduction histidine kinase n=1 Tax=Cyanothece sp. PCC 7425 RepID=B8HT67_CYAP4 Length = 652 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 70/253 (27%), Positives = 118/253 (46%), Gaps = 9/253 (3%) Query: 307 LPVTMQETVYGELH-WQNSHVS---SSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEER 362 +P+ + E G L W SH S L + + Y NQ QQ +L+EER Sbjct: 394 IPLWLNEKTIGALDIWLPSHRCFNRSQIDLAYTFGQQITLASYLNQMFTEVQQTILLEER 453 Query: 363 ATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQ-ALNDAYRQLRELLT 421 IA ++HD+LAQ + + +QL + K I ++ T + I+ SQ A N R + Sbjct: 454 NRIASDIHDTLAQAFTGISLQLEVAKPLIQQEPQTVEQILQHISQLAKNGLAEARRSVWA 513 Query: 422 TFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNA 481 + + A+L L + ++ + T + ++ + + ++LL+I +EA+ NA Sbjct: 514 LYPPGTEYANLAHMLYDSVEQMSRNTPISIEVNLLGQPCPIAPYIGMNLLRIGQEALTNA 573 Query: 482 MKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPE---GHYGLNIMRERAERLGGT 538 +KH+ A + + PD + IRDNG G P + G +GL M ER +R+G Sbjct: 574 LKHSQAQAVWIELTYTPDLV-LLSIRDNGRGFTPPTNLDNLNGGFGLVGMYERCDRIGAQ 632 Query: 539 LTFSQPSGGGTLV 551 ++ G GT + Sbjct: 633 ISILSQPGQGTQI 645 >UniRef50_C4XHQ2 Two-component sensor histidine kinase n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XHQ2_DESMR Length = 653 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 61/202 (30%), Positives = 101/202 (50%), Gaps = 7/202 (3%) Query: 360 EERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFS---QALNDAYRQL 416 EER ++ +LHD L Q L +R++ L RS + A+ + A FS +++ AY Sbjct: 445 EERRRLSHDLHDGLCQQLVGIRMRCAALARSAIPEQGVAEEVTAIFSLLKDSVSQAYDLS 504 Query: 417 RELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIRE 476 R L + + L ++ ++L +++ + + K+ LP + + V L ++ +E Sbjct: 505 RGL---WPVELAPGEVGASLADLVRRVGQSSGVKMQYFEELPCESCLNEHLVQLYRLAQE 561 Query: 477 AVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLG 536 AV NA+KHA I V+ D T+ +RD+G+G + G GL IM RA +G Sbjct: 562 AVANAVKHARPGRIIVTLGCESDRRLTLTVRDDGVG-RQAVRSAGGLGLRIMTYRASMIG 620 Query: 537 GTLTFSQPSGGGTLVSISFRSA 558 TL+ GGGT+V+ S A Sbjct: 621 ATLSIDDAEGGGTVVTCSLACA 642 >UniRef50_A1ATT5 PAS/PAC sensor signal transduction histidine kinase n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1ATT5_PELPD Length = 381 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 61/200 (30%), Positives = 101/200 (50%), Gaps = 10/200 (5%) Query: 360 EERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLREL 419 +ERA +AR++HD + Q L +++QL + + E + + L A +LRE+ Sbjct: 181 QERARVARDIHDGIGQTLQAIKLQLKIRQARCREGEPCGGQALNEIIGELTSAATELREI 240 Query: 420 LTTFR-LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAV 478 + R L L+ DL A+R + + +T + +C+ L + ++ + +I +EA+ Sbjct: 241 ILALRPLFLEDTDLDLAVRSLCERSAKRTGLDVRAECQGSFRGLGSSFKLSIFRICQEAL 300 Query: 479 LNAMKHANASEIAVSCVTAPDGNHT--VYIRDNGI-GIGEPK--EPEGHYGLNIMRERAE 533 N +KH+ + P HT + IRD+G G+ P EG GL IMRERAE Sbjct: 301 TNIVKHSGCRSALIRLEREP---HTMRITIRDDGRGGVSCPTIISQEG-SGLAIMRERAE 356 Query: 534 RLGGTLTFSQPSGGGTLVSI 553 LGG L+ P G GT +++ Sbjct: 357 LLGGALSVISPPGMGTAITV 376 >UniRef50_UPI0001746AED sensor protein fixL n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001746AED Length = 478 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 65/201 (32%), Positives = 99/201 (49%), Gaps = 14/201 (6%) Query: 361 ERATIARELHDSLAQVLSYLRI----QLTLLKRSIPEDNATAQSIMADFSQALNDAYRQL 416 ER I +LHDSL Q L+ + L LK + P A + + +A+ +A R L Sbjct: 275 ERRRIGHDLHDSLGQRLTAASMTANAMLEQLKSTGPLLTAHGELVAQQLREAIAEA-RSL 333 Query: 417 RELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIRE 476 L ++L+ L +ALRE+ ++ + LDC P L + + HL ++ +E Sbjct: 334 SHGLAP--VSLEADGLMAALRELATSVSRSGKVRCVLDCPQPVLLPNVETATHLFRMAQE 391 Query: 477 AVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGH------YGLNIMRE 530 AV NA+KHA+ASEI + D N + + D+G+G+ E P G GL +MR Sbjct: 392 AVNNALKHASASEIRIGLEVQGD-NVILEVDDDGVGLDETPAPPGENREGPGLGLRVMRY 450 Query: 531 RAERLGGTLTFSQPSGGGTLV 551 RA+ + G + F GGT V Sbjct: 451 RAQLIDGQVDFGPAPAGGTRV 471 >UniRef50_Q5WCK2 Two-component sensor histidine kinase n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WCK2_BACSK Length = 354 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 63/218 (28%), Positives = 105/218 (48%), Gaps = 5/218 (2%) Query: 346 FNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADF 405 + + + + ++ +ER IARELHDS++Q L + L+ +D Q Sbjct: 133 WAEKESQLKSEIVSQERNRIARELHDSVSQQLYAASMLLSAAVNGKNQDIEALQKRCEQI 192 Query: 406 SQALNDAYRQLRELLTTFR-LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDA 464 + +NDA +R LL R + L+ + +++D+L + L+ R+ L Sbjct: 193 EKVVNDAQNDMRALLLQLRPIQLEDQSFKEGVEQLVDSLAEKHP--LSFSVRIADAPLSP 250 Query: 465 QMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYG 524 ++ L +I +EA+ NA++HA A EI++ D + I D+G+G + KE G YG Sbjct: 251 GIEDQLFRISQEAIANALRHAEAKEISL-YYDKFDQFALLKITDDGVGF-DRKEHTGGYG 308 Query: 525 LNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEE 562 LN + ERAE +G T G GT V + +G E Sbjct: 309 LNSIEERAEEIGATTRIVSVPGQGTSVEVKVPIVKGGE 346 >UniRef50_D2AQR2 Histidine kinase n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2AQR2_STRRD Length = 591 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 66/214 (30%), Positives = 105/214 (49%), Gaps = 19/214 (8%) Query: 344 LYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMA 403 L +++ ++L L+EER IAR+LHD + Q L + +TL+ D A + Sbjct: 380 LELAESRMDAERLGLLEERDRIARDLHDVVIQRL--FAVAMTLMSTVRLVDRPEASGRLQ 437 Query: 404 DFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALD 463 + L+ RQ+R + + + + AD LR + L A L +P L+++ Sbjct: 438 NSIDELDGTIRQIRSTIFALQTSQRGADF--GLRSQIVELVEGARAHLGF---MPGLSME 492 Query: 464 AQMQV--------HLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGE 515 Q+ HLL ++REA+ N ++HA A+ VS A DG + + D+G+G+ E Sbjct: 493 GQLDGRVPAPVAEHLLAVVREALSNIVRHARAARAEVSVEVA-DGRLVLVVTDDGVGMPE 551 Query: 516 PKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGT 549 GL ++ERAERLGG+ P GGGT Sbjct: 552 DGR---RSGLRNLQERAERLGGSFVAETPRGGGT 582 >UniRef50_B9TQ72 Putative uncharacterized protein (Fragment) n=1 Tax=Ricinus communis RepID=B9TQ72_RICCO Length = 249 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 69/201 (34%), Positives = 98/201 (48%), Gaps = 4/201 (1%) Query: 355 QLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYR 414 Q + EER IARELHD L Q+L+ LR+ L+LL++ A A+ +MA L A Sbjct: 51 QTIREEERTYIARELHDDLGQILASLRMDLSLLQKD-GTGTAEARRLMAGMESNLLTAIA 109 Query: 415 QLRELLTTFR-LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQI 473 LR + T R L + L AL+ + D + TL L LD + +I Sbjct: 110 SLRRIATNLRPRALDEGGLYFALQGLRDDFVERHGIPATLFADEAELRLDDAASTAIFRI 169 Query: 474 IREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGI-GEPKEPEGHYGLNIMRERA 532 ++EA+ N +HANAS + ++ +G + IRD+G GI E E GL MRER Sbjct: 170 VQEALTNIARHANASHVTMNLYRL-NGELLIQIRDDGRGIKAEDMEKAESLGLIGMRERV 228 Query: 533 ERLGGTLTFSQPSGGGTLVSI 553 + G +T S GT + I Sbjct: 229 WAMNGDITISSEEPPGTRIDI 249 >UniRef50_Q0G657 Two-component sensor histidine kinase n=2 Tax=Aurantimonadaceae RepID=Q0G657_9RHIZ Length = 454 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 69/219 (31%), Positives = 106/219 (48%), Gaps = 8/219 (3%) Query: 333 LNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIP 392 LN ++ LG N+ Q L EERA +AR+LHD + +L + ++ + R + Sbjct: 212 LNQMADRLGEASLANRRLSEQLQRLQDEERAALARDLHDDVGPLLFAIDVEAGAIARKLL 271 Query: 393 EDNATAQSIMAD-FSQALNDAYRQLRELLTTFRLTLQQA-DLPSALREMLDTLQNQTSAK 450 +D + + A+ Q A + +R +LT R + L +AL E L TL Q Sbjct: 272 KDEESGAAERANVIKQNAAQARKAVRRILTELRPGVMPGLGLKAALEEHLATL-GQRHPN 330 Query: 451 LTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNG 510 +T A ++ + + IREAV NA+KH + I+V V DGN T +RD+G Sbjct: 331 VTFKIEAEDATYPAPVETTMFRAIREAVNNALKHGLPTRISVK-VAERDGNLTFNVRDDG 389 Query: 511 IGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQ---PSG 546 G + K+ G +G+ MRER E GG L + P+G Sbjct: 390 GGFADGKQKSG-FGIIGMRERLESAGGALKIDEVLLPAG 427 >UniRef50_B4DBN0 Integral membrane sensor signal transduction histidine kinase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DBN0_9BACT Length = 707 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 73/219 (33%), Positives = 108/219 (49%), Gaps = 12/219 (5%) Query: 348 QAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQ 407 +AQ H + EERA +ARELHD+L Q + Q L+ + P A + + Q Sbjct: 494 RAQAHREAT--SEERARLARELHDTLEQEFVGMTRQTEALEHAGPL-TLKAHKALGELRQ 550 Query: 408 ALNDAYRQLRELLTTFR-LTLQQADLPSALREMLDTLQNQT--SAKLTLDCRLPTLALDA 464 L + R + R L + L +A+R + L + T S +D R PT + Sbjct: 551 MLQLSRDNARRAVWDLRDPALLDSGLEAAIRNAVQRLVSDTPVSVSFQVDMRAPT-RIPP 609 Query: 465 QMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNG---IGIGEP-KEPE 520 +QV++L++ +EAV NA+KH++A I V A DG + ++++G G P K P Sbjct: 610 NVQVNILRLAQEAVTNAIKHSDAKAIEVILKHA-DGTVELGVKNDGQNADGSEAPLKTPA 668 Query: 521 GHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAE 559 GH+G+ MRER E+LGG F GGG V AE Sbjct: 669 GHFGIIGMRERCEKLGGIFEFHPQPGGGASVRAQIPVAE 707 >UniRef50_C4RLN3 Histidine kinase n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RLN3_9ACTO Length = 565 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 72/211 (34%), Positives = 107/211 (50%), Gaps = 25/211 (11%) Query: 360 EERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATA--QSIMADFSQALNDAYRQLR 417 EER +ARE+HD +AQ +L ++ I DNA A + ++AL ++ Sbjct: 352 EERQRLAREIHDGVAQ-------ELVMVGYGI--DNALAYVDEDPVETAEALRTLRGEVT 402 Query: 418 ELLTTFRLTL--------QQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVH 469 ++T RL+L + L +A+ E T+ ++ L T L A + Sbjct: 403 RVITELRLSLFELRSEVDRHGGLAAAIAEYARTVGASGGLRVHLSLDESTARLPAATEAE 462 Query: 470 LLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMR 529 LL+I +EAV NA KHA AS + V+C P + + D+G GIG+ + +GHYGL IM Sbjct: 463 LLRIAQEAVTNARKHAGASNLWVTCEVDPP-YAQIEVSDDGHGIGD-QRTDGHYGLAIMA 520 Query: 530 ERAERLGGTLTF--SQPSGGGTLVSISFRSA 558 ERAER+ G L QPS GT V++ S+ Sbjct: 521 ERAERIRGRLEIRPRQPS--GTTVAVVLGSS 549 >UniRef50_B9XQH3 PAS/PAC sensor signal transduction histidine kinase n=1 Tax=bacterium Ellin514 RepID=B9XQH3_9BACT Length = 843 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 58/200 (29%), Positives = 93/200 (46%), Gaps = 9/200 (4%) Query: 361 ERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELL 420 E+ I +LHD + Q L+ + + L + E + + S LN A Q R + Sbjct: 630 EQRRIGHDLHDGVCQQLAGIAFMTSTLAEKLQEKGEAESAQVERISGLLNTAINQTRSVA 689 Query: 421 TT-FRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRL----PTLALDAQMQVHLLQIIR 475 F + L++ L SAL E L + CR P +++D + +HL I + Sbjct: 690 RGLFPVRLEENGLVSALEE----LAANAGDLFKISCRFVSEEPPVSVDNGIALHLYYIAQ 745 Query: 476 EAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERL 535 EAV NA KHA A + ++ G + + ++D+G+G+ P++ G+ IM RA + Sbjct: 746 EAVTNAAKHAKAQNVFITLEPVKGGRYELTVKDDGVGLAIPEKAHPGMGIRIMHYRARVI 805 Query: 536 GGTLTFSQPSGGGTLVSISF 555 G TL+ G GT VS F Sbjct: 806 GATLSLKSKPGSGTQVSCLF 825 >UniRef50_Q2B2D2 Two-component sensor histidine kinase n=2 Tax=Bacillus RepID=Q2B2D2_9BACI Length = 345 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 55/197 (27%), Positives = 98/197 (49%), Gaps = 4/197 (2%) Query: 358 LMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLR 417 +MEER +AR+LHD ++Q L L + + + D+ A+ + + S A ++R Sbjct: 144 VMEERQRLARDLHDVVSQQLFALSMMSSAALKVFDRDSEKAKKQLKEISGIAAKAQGEMR 203 Query: 418 ELLTTFR-LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIRE 476 LL R + L L + +++ L+ +T+ + + + L + HL ++++E Sbjct: 204 ALLLHLRPIQLSDDTLCDGIIKLIHELRGKTT--IDFQASIDEIELSKAAEEHLFRVVQE 261 Query: 477 AVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLG 536 A+ N ++HA+AS+I ++ D + ++I D+G G E YGL MRER E +G Sbjct: 262 ALSNILRHADASKIKLTLTEKEDYTY-LFIGDDGKGFDPHIERVASYGLKTMRERCEEIG 320 Query: 537 GTLTFSQPSGGGTLVSI 553 G G GT + I Sbjct: 321 GIFNIRSKQGEGTYIEI 337 >UniRef50_UPI000169369A sensor histidine kinase n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI000169369A Length = 224 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 64/201 (31%), Positives = 103/201 (51%), Gaps = 11/201 (5%) Query: 358 LMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLR 417 ++EER +ARELHD+++Q L + + T R++ +D AQ + + A ++R Sbjct: 17 IVEERQRLARELHDAVSQQLFAISMTATAALRTLDKDFDKAQRQIFLIEEMSAVAQSEMR 76 Query: 418 ELLTTFR-LTLQQADLPSALREMLDTLQNQTSAKLTLD----CRLPTLALDAQMQVHLLQ 472 LL R + L+ L L ++L L+ + ++ D RLP D HL + Sbjct: 77 ALLLHLRPVHLEGNPLAVGLHKLLQELKAKVPIEIVEDLDEEIRLPKGIED-----HLFR 131 Query: 473 IIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERA 532 I++EA+ N+++H+ AS++ V DG + IRDNGIG + YGL+ MRER Sbjct: 132 IVQEALSNSLRHSKASKLEVKLHHRGDGLR-LSIRDNGIGFEIDNTKQASYGLHTMRERV 190 Query: 533 ERLGGTLTFSQPSGGGTLVSI 553 +GG+L G GT + I Sbjct: 191 NEIGGSLQIITAPGKGTRIEI 211 >UniRef50_Q8YV44 Two-component sensor histidine kinase n=3 Tax=Cyanobacteria RepID=Q8YV44_ANASP Length = 944 Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 71/254 (27%), Positives = 123/254 (48%), Gaps = 12/254 (4%) Query: 305 QILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERAT 364 Q+L V + G W ++ ++ P+ + + R + QK + ++EER Sbjct: 695 QVLTVEYSLQIDGRETWFSARIA---PIRHEQVIWIARDITL---QKRAEAASILEERNR 748 Query: 365 IARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFR 424 +ARE+HD+LAQ + + Q+ K+ + +D +S + + + R + R Sbjct: 749 MAREIHDTLAQAFTGILAQVGAAKQVLTDDLEATESHLDLIKELARTGLVEARRSVVALR 808 Query: 425 -LTLQQADLPSALREMLDTLQNQT-SAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAM 482 L++ L SAL ++ L+ L + +L +++ +LL++ +EA+ NA+ Sbjct: 809 PQLLEEGSLQSALHRLVAQLRTAAIDTTLYYEIEGAVYSLPTEIESNLLRMGQEALTNAI 868 Query: 483 KHANASEIAVSCVTAPDGNHTVYIRDN--GIGIGEPKEPEGHYGLNIMRERAERLGGTLT 540 +HANA EI V V D + +RDN G G+G EG +GL M ERAER+G LT Sbjct: 869 RHANADEIRVELVYDRD-RFCLRVRDNGQGFGVGSIPASEG-FGLLGMSERAERIGAQLT 926 Query: 541 FSQPSGGGTLVSIS 554 G GT + ++ Sbjct: 927 IRSQPGQGTEIVVT 940 >UniRef50_C0N925 HAMP domain protein n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N925_9GAMM Length = 449 Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 68/206 (33%), Positives = 106/206 (51%), Gaps = 26/206 (12%) Query: 358 LMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLR 417 ++EER I R++HD + L L LL+R +D+ Q+I ++ LND LR Sbjct: 258 ILEERERIMRDMHDGIG---GQLVASLALLERE--QDSQIKQNIYTVLTECLND----LR 308 Query: 418 ELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLT---------LDCRLPTLALDAQMQV 468 L L++Q S L +L + +TS KL +D + L + Q + Sbjct: 309 --LIIHSLSMQN----SVLSSLLADFKYRTSRKLEQLDIELDWHVDDKAEQLNIKPQTGL 362 Query: 469 HLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIM 528 HLL+I++EA N +KHA AS I S +P G + I+DNG + + GH G++ M Sbjct: 363 HLLRILQEAFTNILKHAKASSIEFSAKQSPHG-FQILIQDNGQFTPDSLKSPGH-GISNM 420 Query: 529 RERAERLGGTLTFSQPSGGGTLVSIS 554 + RA++LGG+L QP+ GG + +S Sbjct: 421 KTRAKQLGGSLNIEQPASGGCRIILS 446 >UniRef50_A4X9X2 ATP-binding region, ATPase domain protein domain protein n=2 Tax=Salinispora RepID=A4X9X2_SALTO Length = 563 Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 65/204 (31%), Positives = 102/204 (50%), Gaps = 19/204 (9%) Query: 353 FQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDA 412 + L EER +ARE+HD +AQ +L ++ I AT + +++L Sbjct: 344 VRSLATNEERQRLAREIHDGVAQ-------ELVMVGYGIDNALATVHEDTEETAESLRGL 396 Query: 413 YRQLRELLTTFRLTL--------QQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDA 464 +++ ++T RL+L + L +A+ E T+ ++ L T L A Sbjct: 397 RQEVTRVITELRLSLFELRSEVDRHGGLAAAIAEYARTVGVSGGLRVHLSLDESTARLPA 456 Query: 465 QMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYG 524 + LL+I +EAV NA KHA+A+ + V+C P + + D+G GI + + +GHYG Sbjct: 457 TTEAELLRIAQEAVANARKHASAANLWVTCAVDPP-YAQIEVSDDGHGISD-QHTDGHYG 514 Query: 525 LNIMRERAERLGGTLTF--SQPSG 546 L IM ERAER+ G L QPSG Sbjct: 515 LAIMAERAERIRGRLEIRPRQPSG 538 >UniRef50_B3E9K4 Response regulator receiver sensor signal transduction histidine kinase n=1 Tax=Geobacter lovleyi SZ RepID=B3E9K4_GEOLS Length = 395 Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 53/195 (27%), Positives = 107/195 (54%), Gaps = 7/195 (3%) Query: 360 EERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSI-MADFSQALNDAYRQLRE 418 +ER +IAR++HD L Q L+ + +++T + + DN + + D + ++ A ++ Sbjct: 192 DERRSIARDIHDDLGQTLTAMHLEITAM---LHADNVIDLTPRLCDLKKQVDAAIGTVQR 248 Query: 419 LLTTFR-LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREA 477 +++T R L++ L +AL + ++ +T+ C L + ++ L ++ +E+ Sbjct: 249 IISTMRPQVLEELGLEAALESLAQEVRKRTNITCVTSCTLAGEPISQEVASCLYRVAQES 308 Query: 478 VLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGH-YGLNIMRERAERLG 536 + N +H+ A+++ ++ V DG + IRDNG+G+ E + + +G+ MRER R G Sbjct: 309 LTNVFRHSKATKVLLT-VRRRDGWLQLQIRDNGVGVSEAQTAASNAFGVMGMRERVARCG 367 Query: 537 GTLTFSQPSGGGTLV 551 G+ + S GGGT+V Sbjct: 368 GSFSISPRVGGGTIV 382 >UniRef50_C3PKA7 Two-component system sensor kinase n=2 Tax=Corynebacterium RepID=C3PKA7_CORA7 Length = 419 Score = 85.5 bits (210), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 66/204 (32%), Positives = 100/204 (49%), Gaps = 8/204 (3%) Query: 358 LMEERATIARELHDSLAQVLSYLRIQLTLLKRSIP-EDNATAQSIMADFSQALNDAYRQL 416 + ER IA E+HD+LAQ LS +++ L R + ED AQ + + D + Sbjct: 209 MTAERQRIAHEIHDTLAQGLSSIQMLLHAADRDLDQEDIPKAQERIELARRTAADNLHEA 268 Query: 417 RELLTTFR-LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIR 475 R ++ + L + L +A+ M D +++D T L +++ LL+I + Sbjct: 269 RAMIAALQPAALSETSLGAAMTRMADNFAATGGVDVSVDVEGDTQQLPMKVEAALLRIAQ 328 Query: 476 EAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGI---GEPKEPEG--HYGLNIMRE 530 A+ N +KHA+AS+ V+ APD V + DNG G +P G H GL+ MR Sbjct: 329 GAMGNVVKHAHASKARVTVTYAPD-EVRVDVVDNGQGFDVSAVENKPAGLGHIGLSAMRR 387 Query: 531 RAERLGGTLTFSQPSGGGTLVSIS 554 RAE LGG + G GT VS+S Sbjct: 388 RAEELGGEVVIESTPGSGTAVSVS 411 >UniRef50_B4SLY9 Histidine kinase n=3 Tax=Stenotrophomonas RepID=B4SLY9_STRM5 Length = 1009 Score = 85.5 bits (210), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 103/206 (50%), Gaps = 25/206 (12%) Query: 361 ERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQL---R 417 ER IAR+LHD+L Q L ++L + +S P+ T++++ A+ A R L R Sbjct: 793 ERERIARDLHDTLLQGSQGLILRLHAISQS-PQ---TSETVRGQLESAMQLAERNLAEGR 848 Query: 418 ELLTTFRLTLQQADLPSALREMLDTL---------QNQTSAKLTLDCRLPTLALDAQMQV 468 E + R D P A R++ L Q +LT++ P L DA +V Sbjct: 849 ERVNALR------DGPFAGRDLASVLADVHAEYAGQGTNPLRLTVEGAPPPLQADAAEEV 902 Query: 469 HLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIM 528 L I REA+ NA++HA+A I V +++RD+G+GI + GH+GL M Sbjct: 903 FL--IGREAIRNALRHADARAIEVELSYGAR-CFLLHVRDDGVGIADENAARGHWGLQGM 959 Query: 529 RERAERLGGTLTFSQPSGGGTLVSIS 554 RERA+RLG L G GT V++S Sbjct: 960 RERAQRLGADLQLWTRPGLGTEVALS 985 >UniRef50_C4DC51 Histidine kinase with GAF domain n=2 Tax=Actinomycetales RepID=C4DC51_9ACTO Length = 566 Score = 85.5 bits (210), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 108/230 (46%), Gaps = 21/230 (9%) Query: 335 SVSSMLGRGLYFNQAQ--KHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIP 392 +V S G L A + Q L MEER +ARE+HD +AQ L+ L + +P Sbjct: 329 AVESTTGAALRLETALLFEEVQSLATMEERQRLAREIHDGIAQELAMLGYGIDHALAQLP 388 Query: 393 EDNATAQSIMADFSQALNDAYRQLRELLTTFRLTL--------QQADLPSALREMLDTLQ 444 D D ++ L + ++ L+T RL+L + L +A+ + T+ Sbjct: 389 AD-------ATDSAEQLQELRDEVTRLITELRLSLFELRSEVDRHGGLTTAIADYARTVG 441 Query: 445 NQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTV 504 + ++ L L A + LL+I +EA+ NA KHA A + V+C P + Sbjct: 442 SSAGLRVHLSLDEGGARLPAATEAELLRIAQEAITNARKHARAENLWVTCEVDPP-YARI 500 Query: 505 YIRDNGIGI-GEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSI 553 + D+G G+ GE +G YGL IM ERAER+ G+L GT V++ Sbjct: 501 EVADDGTGVSGEGA--DGRYGLTIMSERAERIRGSLEIRPRDPHGTTVAV 548 >UniRef50_Q7WNB8 Two-component system sensor kinase n=2 Tax=Bordetella RepID=Q7WNB8_BORBR Length = 365 Score = 85.5 bits (210), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 67/215 (31%), Positives = 105/215 (48%), Gaps = 21/215 (9%) Query: 361 ERATIARELHDSLAQVLSYLRIQLTLLKRSIP---------EDNATAQSIMADFSQALND 411 ER IA ELHD++ +LS L+ ++ L R I E A + ++ + + D Sbjct: 157 ERQRIAMELHDAVGGMLSALKFDMSRLARHIDRTLGGPGQDERRAQLEGVVGECLGLVQD 216 Query: 412 AYRQLRELLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLTLDCRLPT----LALDAQM 466 +R++ + L L +A+ L Q A+ + CR L LD + Sbjct: 217 TIATVRQISEDLHPSALPHLGLAAAIANHL----RQFEARYGIACRYAGETGELGLDMEA 272 Query: 467 QVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGI-GEPKEPEGHYGL 525 HL +I +E++ N KHA ASE+ V + + +RDNG+G+ G+ + P G YGL Sbjct: 273 MGHLYRIFQESMTNVAKHAQASEVQVR-LGRDAATLVLSVRDNGVGLSGDDRRP-GAYGL 330 Query: 526 NIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEG 560 MRERA RLGGTL+ GGT++++ + G Sbjct: 331 LGMRERARRLGGTLSVGAAPEGGTVLTVEIPAPGG 365 >UniRef50_C6CGT0 PAS/PAC sensor signal transduction histidine kinase n=11 Tax=Enterobacteriaceae RepID=C6CGT0_DICZE Length = 546 Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 53/196 (27%), Positives = 92/196 (46%), Gaps = 1/196 (0%) Query: 360 EERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLREL 419 EER IARE+HD L Q L+ +R+ L+L++ DN + + + + + +R + Sbjct: 347 EERKHIAREIHDELGQHLTSMRMSLSLMRMQFARDNPHMLTQLQNLMALSDKTIQVVRHV 406 Query: 420 LTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVL 479 T R + L AL + D Q L P + L+ + ++++E++ Sbjct: 407 ATRLRPNVLDMGLTPALEWLRDDFIRQYRCPCLLHAPEPEVVLNDECATAAFRVVQESLT 466 Query: 480 NAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTL 539 N +HA A+++ +S + +G + + DNG G +GL M+ER LGG + Sbjct: 467 NIARHAEATQVVIS-LENREGLIVLSVHDNGKGFDAQTRKPNAFGLMSMKERGRMLGGEV 525 Query: 540 TFSQPSGGGTLVSISF 555 G GTLV ++F Sbjct: 526 VIESQPGAGTLVRLTF 541 >UniRef50_A5W510 Integral membrane sensor signal transduction histidine kinase n=10 Tax=Proteobacteria RepID=A5W510_PSEP1 Length = 425 Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 75/218 (34%), Positives = 106/218 (48%), Gaps = 22/218 (10%) Query: 346 FNQAQK---HFQQLLLM---EERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQ 399 QAQ H Q LL +ER +A+ LHD L Q L+ +R QL LL+ + Q Sbjct: 208 LEQAQADNAHLTQALLAVQEQERTQLAQTLHDDLGQYLAGMRAQLCLLRMVAEQPEVVTQ 267 Query: 400 SIMA-DF-SQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRL 457 + A +F + L +R L L L +P L E L +Q A ++CRL Sbjct: 268 TAQALEFNCERLQQGFRALVHNLYPVALHY----MP--LAEAFGLLVSQWQASQGIECRL 321 Query: 458 PT----LALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGI 513 AL + HL ++++EA+ N +HA AS++ V + G ++IRDNG G Sbjct: 322 RVGEHLPALPGASRTHLYRLLQEALTNVARHAGASQVRVRLQRSTKGLR-LFIRDNGCGG 380 Query: 514 GEPKEPEGHYGLNIMRERAERLGGTL-TFSQPSGGGTL 550 +P+ P GL+ M ERA LGG L FS+P GG L Sbjct: 381 CQPQRP--GVGLHSMAERARSLGGELRIFSRPGGGWAL 416 >UniRef50_A1AXR2 Signal transduction histidine kinase, nitrate/nitrite-specific, NarQ n=4 Tax=Gammaproteobacteria RepID=A1AXR2_RUTMC Length = 494 Score = 85.1 bits (209), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 62/229 (27%), Positives = 117/229 (51%), Gaps = 8/229 (3%) Query: 332 LLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSI 391 LL+S++ + L + +++ L +ER +++E+HDSLAQ + L++Q+T+L + Sbjct: 265 LLSSIAENIAIALDKARLDAQTKRMELSQERLFLSQEIHDSLAQTIYSLKLQVTVLGNML 324 Query: 392 PE-DNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAK 450 + A + + A ++LREL+ FR+ L + +L +L+ ++ Sbjct: 325 KTGKKSDASDKVLSLQSNITQANQELRELMCNFRMPLDPKGIEVSLTNLLNRFMSEEGIT 384 Query: 451 LTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNG 510 L L + ++++ +++II+EA+ N KHA A + V + P N + I D+G Sbjct: 385 TYLQVE-GKLQVSPEVEMQIMRIIQEALSNIRKHAKARNVRVLLLVEP--NCQLLIEDDG 441 Query: 511 IGI-GEPKEPE---GHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 IG + E E + G+NIM+ERA R+G ++ GT V ++ Sbjct: 442 IGFEKDQNESEIMGNNIGMNIMKERAIRIGASIEIESEVDEGTCVIVNL 490 >UniRef50_UPI0001692C7B sensor histidine kinase n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001692C7B Length = 344 Score = 85.1 bits (209), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 61/208 (29%), Positives = 109/208 (52%), Gaps = 7/208 (3%) Query: 349 AQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQA 408 ++K +Q +MEER +AR+LHD+++Q L + + + L + + A+ +M Q Sbjct: 130 SEKETKQEAIMEERRRLARDLHDTVSQELFAIHMSASSLPKICEVNPRGAEHVMQQLIQM 189 Query: 409 LNDAYRQLRELLTTFR-LTLQQADLPSAL-REMLDTLQ-NQTSAKLTLDCRLPTLALDAQ 465 + A +Q+R L++ R + L + L A+ R L+ + N+ L ++ P + Sbjct: 190 SHHAQKQMRGLISQLRPIELNGSTLEEAIGRWFLEYCRANELQGHLEVELNEP---MSEP 246 Query: 466 MQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGL 525 ++ L II+E + N +KHA ASE+ +S + + + + ++DNG G + +GL Sbjct: 247 IEQQLFLIIQEGMANIVKHAAASEVYLS-IHELEHQYVMQLQDNGHGFEQKSVTSASHGL 305 Query: 526 NIMRERAERLGGTLTFSQPSGGGTLVSI 553 MRER+E+LGGT G GT V + Sbjct: 306 ATMRERSEKLGGTTEIISKQGAGTRVKV 333 >UniRef50_A8LRP9 Integral membrane sensor signal transduction histidine kinase n=28 Tax=Rhodobacterales RepID=A8LRP9_DINSH Length = 480 Score = 85.1 bits (209), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 59/189 (31%), Positives = 97/189 (51%), Gaps = 3/189 (1%) Query: 360 EERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLREL 419 EER +ARELHDS++Q+L +R L L +R + +A AQ + LN A +++R + Sbjct: 262 EERGRVARELHDSISQLLVGIRYALELARRRVQTGDARAQENIEKGIDGLNGAIQEVRRI 321 Query: 420 LTTFRLT-LQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAV 478 R L L A++++ + +T + + + LD + ++ L +I +EA+ Sbjct: 322 SRDLRPGQLDDLGLGPAIQDLAEEFTKRTGIRAEMKTVVFRNRLDPEAKIALYRIAQEAL 381 Query: 479 LNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGT 538 N +HA A+E+ + G T+ + DNG G+ G GL M+ER E+L GT Sbjct: 382 TNIERHAQATEVHLDLFGHQTG-ATLRVADNGRGLANVSRGAGGLGLRNMQERVEQLDGT 440 Query: 539 L-TFSQPSG 546 L FS +G Sbjct: 441 LQVFSSEAG 449 >UniRef50_A9WFF8 Histidine kinase dimerisation and phosphoacceptor region n=3 Tax=Chloroflexus RepID=A9WFF8_CHLAA Length = 466 Score = 84.7 bits (208), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 57/196 (29%), Positives = 96/196 (48%), Gaps = 5/196 (2%) Query: 361 ERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELL 420 ER IAR+LHD +AQ L+++R+++ L + + ++ + A F L +LR + Sbjct: 261 ERTRIARDLHDGVAQSLAFMRMRIDLWEDWLTQEPERLREEFATFKANLRRQIEELRRAI 320 Query: 421 TTFR-LTLQQADLPSALREMLDTLQNQTSAKLTLD-CRLPTLALDAQMQVHLLQIIREAV 478 R + + Q ALR ++ Q +++D LP L +++ + ++EA+ Sbjct: 321 FALRPIEIGQLGFAGALRRFINEFAEQQDWDVSIDFAELPP-DLPPVLELAAFRFVQEAL 379 Query: 479 LNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPE-GHYGLNIMRERAERLGG 537 N KHA A + + + D +++RD+G+G +EP GH GL MRERA L G Sbjct: 380 NNVAKHAQARRVWIK-LGVRDQGLIIHVRDDGVGFNPGEEPPAGHLGLRQMRERATALDG 438 Query: 538 TLTFSQPSGGGTLVSI 553 G GT V + Sbjct: 439 QCMIMSRPGDGTEVRV 454 >UniRef50_B4DAE0 Integral membrane sensor signal transduction histidine kinase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DAE0_9BACT Length = 340 Score = 84.7 bits (208), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 62/205 (30%), Positives = 90/205 (43%), Gaps = 18/205 (8%) Query: 361 ERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELL 420 ER I +LHDSL Q L+ S+ + +S A+ + RQLRE + Sbjct: 144 ERQRIGEDLHDSLGQKLT---------AASLTANALVLESTTAELTSLAEGLGRQLREAI 194 Query: 421 TTFR--------LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQ 472 R ++LQ L AL + D+ + DC P ++ + + Sbjct: 195 AETRTLSHGLAPVSLQDDGLMHALHALADSTTQAVGVRCVFDCPAPVPVTNSTIAFQFYR 254 Query: 473 IIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERA 532 I +EAV NA+KHA ASEI + + TV + D+G G+ EP GL +MR R Sbjct: 255 IAQEAVNNAVKHATASEIRIGLERHGE-TITVEVEDDGTGLPEPVPASKGIGLRVMRHRT 313 Query: 533 ERLGGTLTFSQPSGGGTLVSISFRS 557 + + GTL GGT VS +S Sbjct: 314 QLISGTLEIGSSPAGGTRVSCRAQS 338 >UniRef50_Q0A821 Signal transduction histidine kinase, nitrate/nitrite-specific, NarQ n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A821_ALHEH Length = 446 Score = 84.7 bits (208), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 59/209 (28%), Positives = 105/209 (50%), Gaps = 9/209 (4%) Query: 358 LMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATA--QSIMADFSQALNDAYRQ 415 L +ER+ I ELHD LAQ L+ L +++ L+ S A ++ + + L+ AY + Sbjct: 229 LEQERSQITHELHDCLAQRLAALGLEVRNLEASHGGGRAPGGLRAGLRHVRRGLDQAYGE 288 Query: 416 LRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIR 475 LR+L+ FR+ L+ L AL+ ++ Q + ++ L P L + +L+I++ Sbjct: 289 LRQLMGQFRIALEGGGLEPALKRLVHRFQRDSGIRVLLSHDWPRGRLSPDQEFQVLRIVQ 348 Query: 476 EAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGE--PKEPEG----HYGLNIMR 529 EA+ N H+ A + V+ + + + + D+G G + P +G H GL +MR Sbjct: 349 EALNNVRNHSGARHVQVA-LHRIGCDMELVVEDDGRGFADSPPDHRDGDDGHHLGLGVMR 407 Query: 530 ERAERLGGTLTFSQPSGGGTLVSISFRSA 558 +RA+ +GG L G GT +++ S Sbjct: 408 DRADAIGGHLEIQSELGEGTRIAVYLPSC 436 >UniRef50_C2C0V0 Possible histidine kinase n=5 Tax=Listeria RepID=C2C0V0_LISGR Length = 358 Score = 84.7 bits (208), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 64/207 (30%), Positives = 106/207 (51%), Gaps = 11/207 (5%) Query: 354 QQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNAT--AQSIMADFSQALND 411 ++ +L+EER IARELHDS++Q L + L+ L E NAT Q + +ND Sbjct: 141 KEAILVEERHRIARELHDSVSQQLFAAMMLLSALNEQ-GEKNATPAMQKQLKLVESIVND 199 Query: 412 AYRQLRELLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLTLDCR--LPTLALDAQMQV 468 + ++R LL R T L+ L + ++L L +AK+ ++ R + +AL ++ Sbjct: 200 SQSEMRALLLHLRPTQLEGKSLKVGMEQLLQEL----TAKIPIEVRWEIADIALKKGIED 255 Query: 469 HLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIM 528 HL +I++E + N ++H+ A+ + V D + + D+G+G + +G YGL M Sbjct: 256 HLFRIVQELLSNTLRHSKAALLEVRLAIV-DQVAILKVVDDGVGFNVGEVAQGSYGLQNM 314 Query: 529 RERAERLGGTLTFSQPSGGGTLVSISF 555 RER E GGT+ GT V + Sbjct: 315 RERVEEFGGTIKIISFPNQGTSVEVKI 341 >UniRef50_C0Z627 Two-component sensor histidine kinase n=3 Tax=Bacillales RepID=C0Z627_BREBN Length = 382 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 69/239 (28%), Positives = 117/239 (48%), Gaps = 7/239 (2%) Query: 317 GELHWQ-NSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQ 375 GEL WQ N S E + S+ + + KH + EER +ARELHD+++Q Sbjct: 137 GELGWQINRLASQWEEQVASLQRLSNHNAALAEQLKHAA---VTEERQRLARELHDAVSQ 193 Query: 376 VLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFR-LTLQQADLPS 434 L + + +KR + ++ A + + A ++R LL R TLQ L Sbjct: 194 QLFAIAMTTAAMKRLVEKNPQRAAQQIELVEEMAAAAQAEMRALLLHLRPATLQNKSLKE 253 Query: 435 ALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSC 494 A+ E+LD L + + +LT + L + ++ HL +I++E++ N ++HA A++IAV Sbjct: 254 AILELLDELTRKNTMQLTWEIE-DVEGLPSGIEDHLFRILQESLSNTLRHARATQIAVKL 312 Query: 495 VTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSI 553 T + + + D+G+G E YGL M+ER +GG++ G GT + + Sbjct: 313 FTLQE-QVRLRVTDDGVGFDPDGEKMTSYGLRSMQERVAEVGGSMEIYSAIGKGTQIEV 370 >UniRef50_B9XSJ3 Multi-sensor signal transduction histidine kinase n=1 Tax=bacterium Ellin514 RepID=B9XSJ3_9BACT Length = 795 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 65/207 (31%), Positives = 102/207 (49%), Gaps = 10/207 (4%) Query: 355 QLLLMEERATIARELHDSLAQVLSYLRIQLTLLK-RSIPEDNATAQSIMAD----FSQAL 409 Q + EER I RE+HD L Q L+ ++ L ++ R + ED+ ++ + D ++ + Sbjct: 561 QFIREEERKHITREIHDELGQSLTGFKMDLAWMRARLLGEDSKASRQQLIDKIENMARLI 620 Query: 410 NDAYRQLRELLTTFR-LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQV 468 ++ +R L T R L L +A+ + QN+T + + + L +DA+ Sbjct: 621 DETANVVRRLCTELRPGVLDDLGLTAAIEWQIREYQNRTGIRCSTEIESGDLGVDAERST 680 Query: 469 HLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVY-IRDNGIGIGE-PKEPEGHYGLN 526 L +I +E + N +HA AS + VS G+ V +RDNG GI E K GL Sbjct: 681 ALFRIFQELMTNTARHAQASRVEVSLKRI--GSEIVLEVRDNGRGIKENEKAGTKSLGLV 738 Query: 527 IMRERAERLGGTLTFSQPSGGGTLVSI 553 MRERA LGG L + G GT+V + Sbjct: 739 GMRERALVLGGELEIAGKPGRGTMVRV 765 >UniRef50_B4WPC3 GAF domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WPC3_9SYNE Length = 2009 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 66/226 (29%), Positives = 111/226 (49%), Gaps = 22/226 (9%) Query: 347 NQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSI--------------- 391 +Q++ + L EER +ARE+HD+LAQ + + +QL + ++ Sbjct: 1771 DQSKAAALSVALTEERNRLAREIHDTLAQAFTGVSLQLEAARSALTKAAASVAAERDPLP 1830 Query: 392 PEDNATAQSIMA--DFS-QALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTS 448 P + T I+ D S Q L++A R +R L + L+ LP+ALR++L+ + + T Sbjct: 1831 PAFDQTQTFILRARDLSRQGLSEARRSVRALRSQ---ALETDTLPTALRKVLNQINHDTH 1887 Query: 449 AKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRD 508 L +Q+HLL+I +EA+ NA++HA A++I ++ P + I D Sbjct: 1888 LDTQFYLEGTPEPLPDDIQLHLLRISQEAITNALRHAQATQIDLTLAFEPR-EIQLRIVD 1946 Query: 509 NGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSIS 554 +GIG + +GL +RER R GT S G GT + ++ Sbjct: 1947 DGIGFTPSSQAGSGFGLVGIRERVARFHGTFQLSSSPGVGTTIEVT 1992 >UniRef50_C7MRK1 PAS domain S-box n=1 Tax=Saccharomonospora viridis DSM 43017 RepID=C7MRK1_SACVD Length = 552 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 74/216 (34%), Positives = 114/216 (52%), Gaps = 26/216 (12%) Query: 359 MEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSI------MADFSQALNDA 412 ++ER +AR+LHDS+ Q L + +Q L+ + +A + +A+ SQ +A Sbjct: 332 LDERRKLARDLHDSVVQHLFSMGMQAKALRAQLERPDADLSQLRGGAQELAELSQ---NA 388 Query: 413 YRQLRELLTTFR-LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLP---TLALDAQMQV 468 LR L+ R + L + L A+R +LQ +T LT+D R P L LD ++ Sbjct: 389 LADLRGLVFELRPMELAERGLVDAVRSHAASLQARTG--LTIDVRAPVGDALDLDLEVAE 446 Query: 469 HLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHT---VYIRDNGIGIGEPKEPEGHY-- 523 + +I++EA+ N +KHANA++ V+ +T P+ +H V I DNG G G+ + Sbjct: 447 DVYRIVQEALHNVIKHANATKAEVT-ITTPEHDHRGLLVKISDNGRGKGQKPRDRTAFRR 505 Query: 524 ---GLNIMRERAERLGGTLTFS-QPSGGGTLVSISF 555 GL MRERAER G L +PSGG T V++S Sbjct: 506 ESLGLQSMRERAERWRGRLVAGPRPSGGWT-VAVSL 540 >UniRef50_UPI00017893B7 integral membrane sensor signal transduction histidine kinase n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI00017893B7 Length = 357 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/197 (28%), Positives = 106/197 (53%), Gaps = 3/197 (1%) Query: 358 LMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLR 417 ++EER +ARELHD+++Q L + + T + R++ +D AQ +A + A ++R Sbjct: 144 IVEERQRLARELHDAVSQQLFAISMTATAVGRTLDKDFDKAQRQVALIEEMSAVAQSEMR 203 Query: 418 ELLTTFR-LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIRE 476 LL R + L+ L LR+++ L+ + ++T + + L ++ HL +II+E Sbjct: 204 ALLLHLRPVYLEGKALEQGLRDLITELRIKVPMEITFEMD-DDIHLLKGIENHLFRIIQE 262 Query: 477 AVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLG 536 A+ N ++H+ A ++ + + V +RD+G+G + + YGL+ M+ER +G Sbjct: 263 AMSNTLRHSKAEKMDIR-IHRRQNTVRVMLRDDGVGFELDDKKQTSYGLSTMQERVTEIG 321 Query: 537 GTLTFSQPSGGGTLVSI 553 G+L F G GT + I Sbjct: 322 GSLQFITAPGKGTRIEI 338 >UniRef50_A0LTI7 Putative signal transduction histidine kinase n=1 Tax=Acidothermus cellulolyticus 11B RepID=A0LTI7_ACIC1 Length = 584 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 78/279 (27%), Positives = 132/279 (47%), Gaps = 30/279 (10%) Query: 292 RISEGQPNPELPMQ----ILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSML-GRGLYF 346 R G P+ P+Q + P+ + + G + L+ V +++ G+ Sbjct: 272 RFGAGVPSDGTPVQGWQAVYPLRVGDRQIGAVVLDGDGAPPGPALITDVDAVVEDAGIRL 331 Query: 347 NQAQ--KHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPED---NATAQ-S 400 A + L EER +ARE+HD +AQ L+ L ++ +D NATA Sbjct: 332 ETALLFGEVRSLATTEERRRLAREIHDGIAQELASLGYRI--------DDQIANATAAPG 383 Query: 401 IMADFSQALNDAYRQLREL-LTTFRLTLQ---QADLPSALREMLDTLQNQT--SAKLTLD 454 + AD D R + EL L+ F L + Q L +AL + + ++ + + LD Sbjct: 384 LAADLRAIRADVSRLITELRLSIFDLRSEVGTQTSLGAALADYVRSIGPGIGLAVHVILD 443 Query: 455 CRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIG 514 + L + ++ LL+I +EA+ NA +HA A+ + + C P H + + D+G G+G Sbjct: 444 ESVDRLPI--PVETELLRIAQEAITNARRHAGATNLWIRCRVDPPFAH-LRVEDDGRGLG 500 Query: 515 EPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSI 553 + +GL +M ERA+R+G TL+ S GGGT+V + Sbjct: 501 PARLDS--FGLEVMHERADRIGATLSISPRPGGGTIVEV 537 >UniRef50_A1ASJ6 Multi-sensor signal transduction histidine kinase n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1ASJ6_PELPD Length = 1168 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 66/220 (30%), Positives = 112/220 (50%), Gaps = 13/220 (5%) Query: 350 QKHFQQLLLMEE--RATIARELHDSLAQVLSYLRIQLTLLKRSIP-EDNATAQSIMADFS 406 + + ++++ +EE R +A ELHD + + L+ L I L+L+ S+P E A ++ + D Sbjct: 951 RAYARRIMDVEENLRKVVAAELHDEIGRDLTVLGINLSLIGTSLPLETAAPLRTRVEDSG 1010 Query: 407 QALNDAYRQLRELLTTFR-LTLQQADLPSALREMLDTLQNQTS--AKLTLDCRLPTLALD 463 + L R +R +++T R L L +ALR + +T ++ +D LP +A Sbjct: 1011 RMLESVSRTVRNIMSTLRPPVLDDYGLAAALRWYGELFSRRTGIDVRVQVDDELPRVA-- 1068 Query: 464 AQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIG---EPKEPE 520 A+ ++ L +I +EA+ N KHA A + + + DG + D+G G+ EP+ PE Sbjct: 1069 AEREIALFRIAQEALTNVAKHAAARNVNL-WLAHDDGLLLFSVADDGRGLACGLEPRNPE 1127 Query: 521 GH-YGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAE 559 +G+ IMRERAE GG GG V++ E Sbjct: 1128 SSGWGMTIMRERAELFGGVFRVHALPAGGVGVTVEMPKEE 1167 >UniRef50_UPI00017468E2 histidine kinase n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017468E2 Length = 698 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 66/210 (31%), Positives = 106/210 (50%), Gaps = 8/210 (3%) Query: 350 QKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQAL 409 Q QQ ++EER IARE HD+L Q L+ L ++L + +D A + ++ + L Sbjct: 483 QLKTQQEAVLEERQRIAREFHDTLEQELAGLSLRLDAATPRVADDKA--RQLLEQQRKLL 540 Query: 410 NDAYRQLRELLTTFR-LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQV 468 + + R+ + R + + LP AL+ ++D LQ T+ + ++ L +Q Sbjct: 541 SRLQTETRDFVWDLRDASRNEVPLPEALQGLVDHLQTTTAIPIQVEVHGEIPPLPPLVQH 600 Query: 469 HLLQIIREAVLNAMKHANASEIAVSCVTAPDGNH-TVYIRDNGIGIGEPKE--PEGHYGL 525 HLL+I REAV NA+K+A ++ V T D + + D+G G K GH+GL Sbjct: 601 HLLRIAREAVNNALKYALPQKVIVKVET--DAQVLRLTVADDGKGFDPSKMSVSGGHFGL 658 Query: 526 NIMRERAERLGGTLTFSQPSGGGTLVSISF 555 MRER+ +L L+ GGGT V ++ Sbjct: 659 QGMRERSRKLHTELSLQSTPGGGTSVGLTL 688 >UniRef50_D1VQR6 GAF sensor signal transduction histidine kinase n=1 Tax=Frankia sp. EuI1c RepID=D1VQR6_9ACTO Length = 596 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 69/215 (32%), Positives = 111/215 (51%), Gaps = 16/215 (7%) Query: 344 LYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMA 403 L +++ +L ++E+R IAR+LHD + Q L + + L L + N + +A Sbjct: 380 LQLAESRSARSRLTMLEDRDRIARDLHDHVMQRLYAVALGLQGLAEGESQPNRARR--LA 437 Query: 404 DFSQALNDAYRQLRELLTTFRLTLQQA----DLPSALREMLDTLQNQT--SAKLTLDCRL 457 + L+ R++R+ T F L + A L ALR ++D + + + +L D L Sbjct: 438 TYVDDLDATIREIRQ--TVFELRGRSAAGGTGLRIALRGVVDEMTDAFGFAPRLLADGPL 495 Query: 458 PTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPK 517 + A+DA++ HLL ++RE++ NA +HA +V+ VT DG I D+G+G+GEP Sbjct: 496 DS-AVDAEVADHLLAVVRESLSNAARHARCRTASVT-VTVADGQVCAEIVDDGVGVGEPV 553 Query: 518 EPEGHYGLNIMRERAERLGGTLTFS-QPSGGGTLV 551 GL MR RA+ L G+ P G GTLV Sbjct: 554 R---SSGLANMRSRADELRGSFQIGPGPDGAGTLV 585 >UniRef50_Q47KE3 GAF:ATP-binding region, ATPase-like n=24 Tax=Actinomycetales RepID=Q47KE3_THEFY Length = 572 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 68/214 (31%), Positives = 111/214 (51%), Gaps = 16/214 (7%) Query: 344 LYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMA 403 L +A++H ++L+++E+R IA++LHD + Q L + + L R I ED+ AQ I Sbjct: 360 LELAEARRHAERLIVLEDRDRIAKDLHDVVIQRLFAIAMSLMSSVRRI-EDDTVAQRIQQ 418 Query: 404 DFSQALNDAYRQLRELLTTFRLTLQQADLPSALR-EMLDTLQNQT-----SAKLTLDCRL 457 L+D RQ+R T F L P+ LR +LD + T S + LD + Sbjct: 419 AVDD-LDDTIRQIRS--TIFALQHNTEGGPAWLRSRILDVVGAATESLGFSPGVRLDGPI 475 Query: 458 PTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPK 517 + D+ + H+L ++REA+ N +HA AS+ V D + T+ + D+G+G+ E Sbjct: 476 DSAVPDSIAE-HVLAVLREALSNVARHARASQ--ADIVVQVDSHVTLTVTDDGVGLPEQG 532 Query: 518 EPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLV 551 GL + ERAE LGG+ ++ GGT++ Sbjct: 533 R---RSGLRNLAERAESLGGSFEAARRPEGGTML 563 >UniRef50_B1YJQ1 Integral membrane sensor signal transduction histidine kinase n=2 Tax=Exiguobacterium RepID=B1YJQ1_EXIS2 Length = 341 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 63/216 (29%), Positives = 110/216 (50%), Gaps = 17/216 (7%) Query: 351 KHFQQL---LLMEERATIARELHDSLAQVLSYLRIQLTLLKRSI---PEDNATAQSIMAD 404 +H +Q+ + EER +AR+LHDS++Q L + + T K++I PE A ++ Sbjct: 128 QHIEQVRVQAITEERKRLARDLHDSVSQQLYAISMMTTAAKQTILTQPETAAKQIDLVET 187 Query: 405 FSQALNDAYRQLRELLTTFR-LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALD 463 +Q A ++R LL R + L+ L L ++L+ L + S +L+ +L + L Sbjct: 188 MAQT---AQSEMRSLLLQLRPVELEGMTLQQGLTQLLEELSRKQSTELS--WKLEVIELP 242 Query: 464 AQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYI--RDNGIGIGEPKEPEG 521 ++ L +I++E + NA++HA AS + + N TV + D+G+G ++ Sbjct: 243 RPIENELFRIVQEGLTNALRHAKASHMDIEL---RQFNDTVILSMNDDGVGFVVDEKKLA 299 Query: 522 HYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRS 557 YG+N MRER +GGT+ G GT + + R Sbjct: 300 SYGINSMRERTAEMGGTIRLVSVPGQGTQIEVKLRK 335 >UniRef50_Q2Y9N2 Periplasmic sensor signal transduction histidine kinase n=1 Tax=Nitrosospira multiformis ATCC 25196 RepID=Q2Y9N2_NITMU Length = 692 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 108/456 (23%), Positives = 195/456 (42%), Gaps = 63/456 (13%) Query: 139 LQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSP 198 LQ E+++LL++ + L + TL F RR ++ PL+ L I G + S Sbjct: 215 LQLKFEQQILLILVV-LCFALFFATLATFYTRR---NILLPLDYLRRQVSGIAQGNY-ST 269 Query: 199 PLDTNLPNELGLLAKTFNQMSS----ELHKLYRSLEASVEEKTRDL---HEAKRRLEV-- 249 + NE+ L FN M+ E+ KL R +E S+ E+ +++ + +R +E Sbjct: 270 RCAISTRNEIAELGAGFNSMAEAIEHEIIKL-RQVEESLRERLKEINCFYSIRRGMESSS 328 Query: 250 LYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQILPV 309 L + + T I F H+ + + + E + +P + + Sbjct: 329 LEEVCDTIATELIAAMQFPHLAGVKIEMDGKELV--------------SDPYHGNHVHEL 374 Query: 310 TMQETVYGE------LHWQNSH---VSSSEPLLNSVSSMLGRGLYFNQAQKHF---QQL- 356 Q TV+GE L ++ + + L++ + LGR L Q + Q+L Sbjct: 375 QKQITVHGEIRGWIKLFYRGDRFFLLPEEQNLIDVIGDDLGRWLEHQQTEARVLVEQELR 434 Query: 357 ---------------LLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSI 401 + E+R IARE+HD L Q+L+ L ++++LL+ + + ++I Sbjct: 435 VRDAAIREFAAHLERMREEDRKYIAREIHDELGQLLAALHLEISLLRSAKDHGSERLETI 494 Query: 402 MADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPT-- 459 + ++ + A + + + R + SAL ++ + T + D RLP Sbjct: 495 RHNMAELVEKAGQSVHNVAEHLRPASLGLGIESALTKLTSEFKKHTG--IYCDLRLPEEP 552 Query: 460 LALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEP 519 + LD V + +I++E++ N +H+ A+ + + D V I DNG G Sbjct: 553 VNLDEDQTVAIFRIVQESLTNVTRHSGANRVEIRLFREKD-EVIVEICDNGRGFDPESAK 611 Query: 520 EGH-YGLNIMRERAERLGGTLTFSQPSGGGTLVSIS 554 +G +GL MRERA L G + + G G LV +S Sbjct: 612 KGKSFGLVGMRERAAALRGYIAITSGPGQGALVRVS 647 >UniRef50_B3U4S0 Response regulator receiver n=1 Tax=Candidatus Nitrospira defluvii RepID=B3U4S0_9BACT Length = 998 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 60/196 (30%), Positives = 98/196 (50%), Gaps = 3/196 (1%) Query: 360 EERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLREL 419 EER IARE+HD L Q L+ ++++L LL I E + + + S ++ + ++ + Sbjct: 797 EERILIAREIHDELGQALTGVKLELCLLHDQIAEVSPMMRKKLESISTLVDGTIQSVQRI 856 Query: 420 LTTFR-LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAV 478 T R + L Q L A+ Q +T + TLD L + L + +I +E + Sbjct: 857 ATELRPVVLDQLGLIPAIEWQAHEFQARTGIQCTLDVYLRAVTLSHAGSTAMFRIFQEIL 916 Query: 479 LNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGH-YGLNIMRERAERLGG 537 N +HA AS + ++ + G+ + +RDNG G+ + + + H GL MRERA LGG Sbjct: 917 TNVARHAQASVVHIT-LQEQAGSLVLDVRDNGRGVTDAELADPHSLGLVGMRERALLLGG 975 Query: 538 TLTFSQPSGGGTLVSI 553 F+ G GT V + Sbjct: 976 ETIFTGSPGTGTAVRV 991 >UniRef50_D2L4L4 Histidine kinase n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L4L4_9DELT Length = 636 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 66/198 (33%), Positives = 89/198 (44%), Gaps = 8/198 (4%) Query: 360 EERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQS--IMADFSQALNDAYRQLR 417 EER I+ ELHD L Q L+ R++ L P +AT +A S L+ Q Sbjct: 422 EERRRISLELHDGLCQGLTAARLRCDALS---PGGSATGADGEALARLSGLLDTLVGQAY 478 Query: 418 ELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREA 477 +L L+ + + REML ++ + +P A L +I +EA Sbjct: 479 DLSRGL-WPLEHDGVGPSFREMLRRQAEASAVPIEFHRDMPCQACPRPHLAQLYRIAQEA 537 Query: 478 VLNAMKHANASEIAVSCVTAPDGNHTVY-IRDNGIGIGEPKEPEGHYGLNIMRERAERLG 536 V NA+KHA I VS + P G TV +RD+G G K P G GL IM RA +G Sbjct: 538 VANALKHARPGRIVVS-LACPAGQGTVLAVRDDGCGRCGDKAPAGGLGLGIMAHRARLIG 596 Query: 537 GTLTFSQPSGGGTLVSIS 554 G L GGGT V + Sbjct: 597 GELRILDAPGGGTEVVCT 614 >UniRef50_C6CT57 Histidine kinase n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CT57_PAESJ Length = 387 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 70/257 (27%), Positives = 115/257 (44%), Gaps = 26/257 (10%) Query: 315 VYGELHWQNSHVSSSEPLLNSVSSML-----------GRGLYFNQAQ-----KHFQQLLL 358 +YG W + E L N + +ML GR +AQ +L + Sbjct: 124 LYGMEVWHYEETNGLEGLYNLLPAMLAVLLVPFVMFIGRRSRVLRAQLELANDEISRLSI 183 Query: 359 MEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRE 418 EER I+RELHD+L L+ + ++ L ++ I A+ + D A +Q+RE Sbjct: 184 QEERQRISRELHDTLGHTLTMITLKSELAEKLIAHHPDRAKQEIRDVQLTSRAALKQVRE 243 Query: 419 LLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCR--LPTLALDAQMQVHLLQIIRE 476 L+T Q +L +A R + +A +T+ + + +L + L +RE Sbjct: 244 LVTGMNTVTLQDELSNAKRIL-------AAAFITIKVQGDPASASLSPLIDNMLGMCLRE 296 Query: 477 AVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLG 536 AV N +KH+ A + + PD + + IRDNG+G + H GL M+ER + Sbjct: 297 AVTNVVKHSEARQCVIEWAVTPD-QYRLAIRDNGVGCNLADKGPAHNGLRGMQERLNLVD 355 Query: 537 GTLTFSQPSGGGTLVSI 553 G L F G G++++I Sbjct: 356 GKLEFKSAKGSGSVITI 372 >UniRef50_C8NE28 Sensor histidine kinase n=1 Tax=Granulicatella adiacens ATCC 49175 RepID=C8NE28_9LACT Length = 355 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 100/208 (48%), Gaps = 7/208 (3%) Query: 357 LLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQL 416 ++ +ER IARELHDS++Q L + ++ L + Q +A L+ A ++ Sbjct: 148 VIEQERRRIARELHDSVSQQLFAAMMMISALNERKQHFDEKEQKQLAMIEHVLSQAQSEM 207 Query: 417 RELLTTFR-LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIR 475 R LL R ++L+ L S + +L LQ + K+ D + + L ++ HL +I + Sbjct: 208 RALLLHLRPISLENKSLKSGIEGLLVELQTKVQMKIHWD--IEDVTLPEGVEDHLFRIAQ 265 Query: 476 EAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERL 535 E + N ++H++A + V + D N I D+G+G G YG+N M+ER + L Sbjct: 266 ELLSNTLRHSHAKHLEV-YLRQKDSNVIFKIEDDGVGFNVDDIHTGSYGINNMKERVQGL 324 Query: 536 GGTLTFSQPSGGGTLVSISF---RSAEG 560 GG + GT + I R EG Sbjct: 325 GGQVKIVSFPNQGTTIEIKIPLGRHLEG 352 >UniRef50_A6GSY8 Sensory transduction histidine kinase n=1 Tax=Limnobacter sp. MED105 RepID=A6GSY8_9BURK Length = 512 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 58/197 (29%), Positives = 94/197 (47%), Gaps = 3/197 (1%) Query: 360 EERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLREL 419 +ER IARE+HD + L+ L+ + L +++ D+A Q + D + + + + Sbjct: 306 QERGAIAREIHDDMGGSLTKLKADVAWLNKNLTADSAI-QEKLDDMLELIEHLLASSQRI 364 Query: 420 LTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVL 479 R + L AL ++ Q +T + T C + L LD++ L +I++EA+ Sbjct: 365 AKDLRPGILDYGLIPALEWQMNDFQKRTQIEGTFQCNVEELDLDSEQSTALFRILQEALT 424 Query: 480 NAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGI-GEPKEPEGHYGLNIMRERAERLGGT 538 N +KHA A+ + V + T+ IRDNG GI K E +GL M+ER G Sbjct: 425 NIVKHAQATRVDVELFVT-ESELTLEIRDNGRGIENTDKLKETSFGLRGMQERVAAFEGW 483 Query: 539 LTFSQPSGGGTLVSISF 555 + S G GT V +S Sbjct: 484 VDVSGSLGSGTTVMVSI 500 >UniRef50_D0BKY9 Sensor histidine kinase VraS n=1 Tax=Granulicatella elegans ATCC 700633 RepID=D0BKY9_9LACT Length = 351 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 57/203 (28%), Positives = 98/203 (48%), Gaps = 4/203 (1%) Query: 361 ERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELL 420 ER IARELHDS++Q L + L+ + + + Q +A + +ND+ ++R LL Sbjct: 152 ERHRIARELHDSVSQQLFAAMMMLSAMNEQKEQLSPVIQQQLALVEKVINDSQSEMRALL 211 Query: 421 TTFR-LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVL 479 R ++L+ L + +L L T +L+L L + L + + HL +I++E V Sbjct: 212 LHLRPISLENKTLVQGIESLLKEL--TTKVQLSLHWELDEVTLPSTFEDHLFRIVQELVS 269 Query: 480 NAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTL 539 N ++HA A ++ V + D + + D+GIG G YGL + ER +GG Sbjct: 270 NTLRHAKAKQLEV-FLKQKDDYIILKLVDDGIGFDTSVSKAGSYGLKNIEERVAGMGGQC 328 Query: 540 TFSQPSGGGTLVSISFRSAEGEE 562 + GT++ I + +E Sbjct: 329 KIISIANQGTIIEIKIPQKQEKE 351 >UniRef50_D1C9Z9 GAF sensor signal transduction histidine kinase n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C9Z9_SPHTD Length = 883 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 113/227 (49%), Gaps = 14/227 (6%) Query: 343 GLYFNQAQKHFQQ--LLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATA-- 398 GL A+ + Q L + EER +A+E+HD+LAQ L+ + + L L +P A Sbjct: 656 GLAVENARLYAQSHGLAIAEERGRLAQEIHDTLAQGLTAISLHLDLADAYLPHKPEQAAD 715 Query: 399 --QSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCR 456 + + Q L +A R + +L L Q LP ALR ++ T T + Sbjct: 716 KVRRALELTRQNLEEARRSVLDLRAA---RLHQMSLPDALRRLVLTFTGDTGVEADFVVE 772 Query: 457 LPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGE- 515 L A++++ L +I EA+ N +HA A+ + V+ +TA +G ++ + D+G+G + Sbjct: 773 GLVGRLSARVEMGLYRIAEEALNNVRRHATANHVRVA-LTASEGQVSLTVEDDGVGFAQE 831 Query: 516 --PKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEG 560 ++ G +GL +RERA L GTL S G GT + ++ AEG Sbjct: 832 AIERDNGGGFGLMSIRERARLLRGTLDLSSAPGEGTRLVVTI-PAEG 877 >UniRef50_UPI0001B54FA0 histidine kinase n=1 Tax=Streptomyces sp. AA4 RepID=UPI0001B54FA0 Length = 423 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 60/200 (30%), Positives = 102/200 (51%), Gaps = 5/200 (2%) Query: 354 QQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAY 413 +Q +++ER +ARE+HD++AQ L+ + QL R+ + A Q +A D+ Sbjct: 216 RQAGVLDERQRMAREIHDTVAQGLTGIVTQLQAADRAT--EAADRQRHLAHVHTLAKDSL 273 Query: 414 RQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQ 472 + R + R L + LP AL + + + + + K+T D L +++V L + Sbjct: 274 TEARRAVQALRPEPLADSHLPEALAGLANRVSDTSGTKVTADVEGDARPLLPELEVTLYR 333 Query: 473 IIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEG-HYGLNIMRER 531 + +EA+ NA KHA A+ I ++ D + IRD+G G +G +GL MR+R Sbjct: 334 VAQEALANAEKHARANRIGITLTYTSD-LIMLDIRDDGRGFAPGDRGDGTGFGLEAMRQR 392 Query: 532 AERLGGTLTFSQPSGGGTLV 551 +R+ G+LT G GT+V Sbjct: 393 VQRVAGSLTIESARGEGTVV 412 >UniRef50_Q4K8Y6 Sensor histidine kinase, putative n=8 Tax=Pseudomonas RepID=Q4K8Y6_PSEF5 Length = 330 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 60/199 (30%), Positives = 101/199 (50%), Gaps = 9/199 (4%) Query: 361 ERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELL 420 ER ++RELHD + Q+L+ ++Q LKR +P++ Q A L + ++R++ Sbjct: 120 ERHRLSRELHDDIGQLLTAAKLQTDWLKRRLPDE---LQEHCAVLGTTLEETLAKVRDVS 176 Query: 421 TTFR-LTLQQADLPSALR-EMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAV 478 L L ++LR +L TL+N TS +L+C + +M V +I +EAV Sbjct: 177 AILNPRQLASLGLEASLRAHLLKTLEN-TSVHWSLECHQRLAGIPEEMAVAAFRITQEAV 235 Query: 479 LNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEP--EGHYGLNIMRERAERLG 536 N ++HA A + V P+G +++I D+G G +P +G G+ M+ER +LG Sbjct: 236 TNILRHAQAKNLLVRLQRLPEG-LSLFISDDGQGFAPASDPGAQGQRGMAGMQERISQLG 294 Query: 537 GTLTFSQPSGGGTLVSISF 555 G L + + GT + F Sbjct: 295 GLLKVTSEADQGTQIEALF 313 >UniRef50_C1RNK2 Signal transduction histidine kinase, COG4585 n=1 Tax=Cellulomonas flavigena DSM 20109 RepID=C1RNK2_9CELL Length = 388 Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 63/192 (32%), Positives = 90/192 (46%), Gaps = 10/192 (5%) Query: 368 ELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTL 427 E+HDSL + L + + L + D A+ + + A + R LLT R+ Sbjct: 189 EMHDSLGKTLHGVALAAQTLPSWVDSDPDAAREHARLLADGAHRAAAEARGLLT--RMRA 246 Query: 428 QQADLPSA--LREMLDTLQNQTSAKLTLDC-RLPTLALDAQMQVHLLQIIREAVLNAMKH 484 Q D P A L E+ T Q + R L+ A+ +V L ++ EA+ N +H Sbjct: 247 DQPDRPLAQVLAELCATWQGECGTPCHFRADRAVDLSTAARYEV--LAVVAEALENVRRH 304 Query: 485 ANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKE---PEGHYGLNIMRERAERLGGTLTF 541 A AS + V PDG V +RD+G+G + P GHYGL MRERA+ +G LT Sbjct: 305 ARASTVGVVLAALPDGRVQVEVRDDGVGFSPSPDGAGPRGHYGLVGMRERAQSVGAELTV 364 Query: 542 SQPSGGGTLVSI 553 + G GT V I Sbjct: 365 ASAPGEGTSVVI 376 >UniRef50_A1S6S1 Sensor histidine kinase n=1 Tax=Shewanella amazonensis SB2B RepID=A1S6S1_SHEAM Length = 1046 Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 60/204 (29%), Positives = 96/204 (47%), Gaps = 15/204 (7%) Query: 360 EERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLREL 419 EER +I+RELHD Q L+ +I L L +R P D + + QA+ +Q+R + Sbjct: 846 EERKSISRELHDQFGQSLTATQISLQLFRRQHPGDPKLIDTCITTI-QAM---IKQVRAI 901 Query: 420 LTTFRLT-LQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAV 478 R + L L + L L+ + + + + + L ++ + L ++I+E+V Sbjct: 902 SFDLRPSLLDDVGLVAGLHHQLNKMSSSLTHPIIFNADTDIPELSPELTITLFRVIQESV 961 Query: 479 LNAMKHANASEIAVSCVTAPDGNH-TVYIRDNGIGIGEPK------EPEGHYGLNIMRER 531 NA++HANA+ I V PDG+ + DNG+G EP GH GL + ER Sbjct: 962 TNAIRHANATRIEVKLY--PDGDKIKAEVSDNGVGF-EPGGISAKVSKGGHLGLLGIEER 1018 Query: 532 AERLGGTLTFSQPSGGGTLVSISF 555 + G L GG +S+ F Sbjct: 1019 VKSQNGNLNIKAIPHGGVSISVEF 1042 >UniRef50_B8HNY8 Histidine kinase n=1 Tax=Cyanothece sp. PCC 7425 RepID=B8HNY8_CYAP4 Length = 403 Score = 81.6 bits (200), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 64/202 (31%), Positives = 102/202 (50%), Gaps = 17/202 (8%) Query: 359 MEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRE 418 +EER IARE+HDSL L+ + L+ R +P D A +++ + Q A +++R+ Sbjct: 198 LEERNRIAREIHDSLGHHLTVFNLHLSAALRLLPTDPEEAIALLEEVKQLGATALQEVRQ 257 Query: 419 LLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQ------MQVHLL 471 + R LQ L +AL+ ++ + T LP L ++ Q +QV L Sbjct: 258 SVGQLRTDPLQGNSLETALQTLISEVHKSTGI-------LPKLQVNLQRTLPRDVQVALY 310 Query: 472 QIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRER 531 +I++E++ N K+A AS I + C+TA D + I DNG G + G +GL ++ER Sbjct: 311 RIVQESLTNICKYAQASAIQI-CLTA-DSELHLTIADNGQGFDLSQNTTG-FGLQGLKER 367 Query: 532 AERLGGTLTFSQPSGGGTLVSI 553 LGGTLT G G + + Sbjct: 368 VTALGGTLTIHTAPGQGCEIGV 389 >UniRef50_B5YIR1 Sensory box histidine kinase, putative n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YIR1_THEYD Length = 726 Score = 81.6 bits (200), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 59/200 (29%), Positives = 101/200 (50%), Gaps = 13/200 (6%) Query: 361 ERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQAL---NDAYRQLR 417 ER IA+E+HD L Q L+ L++ L+ +K+ + ++ + F + L N +Q++ Sbjct: 527 ERKEIAKEIHDELGQSLTALKLSLSWIKKRVEDEFLNKK-----FDETLTIVNALIKQVQ 581 Query: 418 ELLTTFRLTL-QQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIRE 476 + R +L L A+ + + TS +D + L + + L +I +E Sbjct: 582 NISNRLRPSLIDYLTLEDAIMWQVKEFERNTSIVCNVDIAEHGIKLSKNVSLTLFRIFQE 641 Query: 477 AVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEP--KEPEGHYGLNIMRERAER 534 A+ N +HANA+E+ + + + + + I+DNGIGI + K PE +GL MRERA Sbjct: 642 ALTNIARHANATEVDIKMFRS-EASILLIIKDNGIGISDEKIKSPES-FGLMAMRERAYS 699 Query: 535 LGGTLTFSQPSGGGTLVSIS 554 + TL + GGT + IS Sbjct: 700 INATLDIHRSYEGGTEIIIS 719 >UniRef50_B1HW31 Nitrate/nitrite sensor protein n=2 Tax=Bacillaceae RepID=B1HW31_LYSSC Length = 342 Score = 81.6 bits (200), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 111/230 (48%), Gaps = 23/230 (10%) Query: 344 LYFNQAQKHFQ--------QLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDN 395 +YF + K+ Q QL+ EER IAR+LHD++ L+ ++I+ L + I D Sbjct: 122 IYFVEKSKNLQIELADVNTQLVQQEERQRIARDLHDTIGHTLTMIKIKTELTTKLIDRDP 181 Query: 396 ATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDC 455 ++ + + D A +Q+REL++ Q +L +++L + T T++ Sbjct: 182 SSVKQELNDILATTRIALKQVRELVSDMNFVSLQTELLHC-QQLLQSANITT----TINN 236 Query: 456 RLPTLALDAQMQVHLLQIIREAVLNAMKHANA--SEIAVSCVTAPDGNHTVYIRDNGIGI 513 P + L + + L +REA N +KH+ A I + C + T+ I+D+GIG+ Sbjct: 237 HCPKIVLSSVEETMLALCVREATTNMLKHSQAQNCNIEIEC---RNRQFTIAIQDDGIGL 293 Query: 514 GEPKEPEG-HYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEE 562 E +G G+N M+ER L G F + GTLV S +G+E Sbjct: 294 ----EQKGLGNGMNSMKERMRVLQGYALFEGGTRTGTLVIFSIPIQDGKE 339 >UniRef50_B5JKT1 Histidine kinase domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JKT1_9BACT Length = 729 Score = 81.6 bits (200), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 58/201 (28%), Positives = 101/201 (50%), Gaps = 5/201 (2%) Query: 358 LMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLR 417 ++ ER +ARE+HD+L+Q L + +QL L++ E +A A S ++ + A + R Sbjct: 527 ILNERNRVAREIHDTLSQSLGAISVQLELVRTRANEMSAAALSHLSTAHELARGALAEAR 586 Query: 418 ELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIRE 476 + + R L++ DL ALR +L L + T + + L ++ +LL+I +E Sbjct: 587 DSIWNMRSQVLERCDLSEALRRILTRLTDDTGVRFDIKVEGTKRRLPPVVENNLLRIGQE 646 Query: 477 AVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEG---HYGLNIMRERAE 533 A+ NA KH S I V + + ++D+G+G + G +GL +RER + Sbjct: 647 AITNACKHGKPSRIDVG-LNFERRRVCLSVKDDGVGFAIDEALNGSERSFGLVGLRERVD 705 Query: 534 RLGGTLTFSQPSGGGTLVSIS 554 LGGT+ G G L+ ++ Sbjct: 706 VLGGTIEVESRPGEGALIVVA 726 >UniRef50_C7RBI0 Histidine kinase n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RBI0_KANKD Length = 247 Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 64/204 (31%), Positives = 104/204 (50%), Gaps = 8/204 (3%) Query: 360 EERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLREL 419 +ER IARELHD + Q+L+ L QL + + D + + QAL+D RE+ Sbjct: 45 DERKHIARELHDGVGQLLTALINQLQQMHKEGEPDPKELEEALTLARQALSDT----REI 100 Query: 420 LTTFR-LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAV 478 R L L AL+ + + + S K+ L +L ++ LD + Q + ++++EA+ Sbjct: 101 SRLMRPRILDDLGLIPALQWLSRVMGEKNSIKIDLHEQL-SVNLDDETQTLVFRVVQEAI 159 Query: 479 LNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGI-GEPKEPEGHYGLNIMRERAERLGG 537 NA+KHA+A+ I ++ V A + + IRDNG+G+ E E +GL+ MR+R GG Sbjct: 160 TNAIKHADATHIDIT-VIATERMLVLKIRDNGVGMTKETSESVEGFGLSAMRDRVAAFGG 218 Query: 538 TLTFSQPSGGGTLVSISFRSAEGE 561 L G G + + + GE Sbjct: 219 QLMVESQPGDGCEIKVVITGSIGE 242 >UniRef50_Q3SJC2 Multi-sensor Signal Transduction Histidine Kinase n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SJC2_THIDA Length = 1168 Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 55/205 (26%), Positives = 103/205 (50%), Gaps = 11/205 (5%) Query: 360 EERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLREL 419 +ER IARE+HD L Q+L+ LR++++ + + DN + +N + +R++ Sbjct: 963 DERKHIAREIHDELGQLLTALRMEVSAVGMAFGRDNPELDEKVRSMKTVINQTIQTVRQV 1022 Query: 420 LTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPT---LALDAQMQVHLLQIIRE 476 T+ R A L L +D L ++ + ++C + +ALD L +I++E Sbjct: 1023 ATSLR----PAALDLGLETAIDWLASEFCKRNAVECAVAIPGEIALDEVRATALFRILQE 1078 Query: 477 AVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPE--GHYGLNIMRERAER 534 + N +HA A+ +++ T + + + DNG G +P+E + G +GL + ER Sbjct: 1079 TLTNIARHAGATSVSIKLKTTGE-EICLKVTDNGRGF-DPEEAKQGGSFGLKGIAERVLI 1136 Query: 535 LGGTLTFSQPSGGGTLVSISFRSAE 559 LGGT+T G G +++ +A+ Sbjct: 1137 LGGTMTIKSAPGQGAELAVCIPAAD 1161 >UniRef50_Q65CU9 YvfT n=1 Tax=Bacillus licheniformis ATCC 14580 RepID=Q65CU9_BACLD Length = 234 Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 69/235 (29%), Positives = 120/235 (51%), Gaps = 40/235 (17%) Query: 346 FNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADF 405 ++A +H ++L+ EER IAR+LHD+L LS L ++ L++R I Sbjct: 21 LDEANQHIKELVKREERVRIARDLHDTLGHTLSLLTLKSQLVQRII-------------- 66 Query: 406 SQALNDAYRQLRELLTTFRLTLQQ-----ADLPSAL--REMLDTLQNQTSAKLTLD---- 454 + A A ++ RE+ TT R L+Q +D+ +A E++ Q +A +T + Sbjct: 67 ASAPERARKEAREMETTSRAALKQVRELVSDMKTATIAEELIHIQQILRAADITFEYMGG 126 Query: 455 ---CRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGI 511 +P + Q + IREA N +KH+ A+ +S ++ D ++ I+D+G+ Sbjct: 127 SDFSNIPPVT-----QNIVSMCIREAATNIVKHSRATHCTIS-ISQTDDKISITIKDDGM 180 Query: 512 GIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSIS---FRSAEGEES 563 G+ + K P G+ GL M+ER + G L S + GT++SI+ + AEG+E+ Sbjct: 181 GMDQQKTPFGN-GLRGMKERLALIDGALDVS--THDGTVLSIAVPNVKKAEGKEA 232 >UniRef50_C4DDE2 Signal transduction histidine kinase, COG4585 n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DDE2_9ACTO Length = 380 Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 65/215 (30%), Positives = 103/215 (47%), Gaps = 6/215 (2%) Query: 334 NSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPE 393 ++ S R ++++ Q EER IARELHDSL +S + +Q ++ + Sbjct: 153 RALESARSRAAEAERSKEELAQRRAAEERVRIARELHDSLTHAISVVNVQSSVALHMLNR 212 Query: 394 DNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTL 453 A++ + + A DA R+LR L R+T + D + + L L +++ + + Sbjct: 213 QPEQAEASLRNIRAASQDAMRELRATLRALRMT--EGDSTPGI-DSLPALVERSALTIAM 269 Query: 454 DCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGI 513 D AL + + +I++EA+ N+ +HA AS + +S V D + T I D+GIG Sbjct: 270 DISPDRQALPETVDRTVYRIVQEALTNSTRHARASAVDISIVV-DDESVTTTITDDGIGP 328 Query: 514 GEPKEPEGHYGLNIMRERAERLGGTL-TFSQPSGG 547 EG GL MRER LGG L P GG Sbjct: 329 APEGVAEG-LGLMGMRERVAALGGDLRPGPGPDGG 362 >UniRef50_B2A7N6 Integral membrane sensor signal transduction histidine kinase n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A7N6_NATTJ Length = 393 Score = 81.3 bits (199), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 57/225 (25%), Positives = 112/225 (49%), Gaps = 24/225 (10%) Query: 348 QAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQ 407 ++QK + + +++ER IA ++HD++ L+ + + KR I +D A+ + Sbjct: 182 ESQKQLENMAVIKERNRIAHDIHDTVGHTLTTVLVGTEAAKRLIDKDPELAK-------E 234 Query: 408 ALNDAYRQLRELLTTFRLTLQQ-------ADLPSALREMLDTLQNQTSAKLTLDCRLPTL 460 L+ A Q+R+ L + +++ D SA+ ++ + QT + +DC + Sbjct: 235 KLSLAQDQVRKGLNNIKNSIKDIKDHNEIIDFNSAVNNLIHETEQQTD--IEIDCHISVS 292 Query: 461 A--LDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVY-IRDNGIGIGEPK 517 + Q +L+ ++E + N +KH N++ + + D + + + DNG G + Sbjct: 293 EDQISQTKQKVILRALQEGLTNGIKHGNSTYFKFNLI--EDQEYIYFDLEDNGTG---SE 347 Query: 518 EPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEE 562 + + +GLN M++R E LGG+LT + GG ++SI EGEE Sbjct: 348 DKDMGFGLNFMKDRVEELGGSLTANSKQDGGFILSIEIPVEEGEE 392 >UniRef50_B9DT59 Sensor histidine kinase n=6 Tax=Streptococcus RepID=B9DT59_STRU0 Length = 444 Score = 81.3 bits (199), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 53/194 (27%), Positives = 100/194 (51%), Gaps = 6/194 (3%) Query: 361 ERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELL 420 ER I+RE+HD+L L+ + + +K I D A++ + S + + +R L Sbjct: 243 ERKRISREIHDTLGHALTGISAGIDAVKVLIDIDPKKAKNQLVSVSNVVREGIVDVRRSL 302 Query: 421 TTFR-LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVL 479 R L+ L AL ++++ Q + ++ T L ++ + ++I+E++ Sbjct: 303 KKLRPDALESRTLQDALNKIINDYQEISQIQIDFHYDWQTADLSVAVEDIIFRVIQESIT 362 Query: 480 NAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTL 539 N+++H +AS+I ++ + + ++T+ I+DNGIG KE YGL MRER +G + Sbjct: 363 NSLRHGHASKIDITM--SENNDYTITIKDNGIG---AKEFSLGYGLMQMRERLAIIGAQV 417 Query: 540 TFSQPSGGGTLVSI 553 TF+ G T ++I Sbjct: 418 TFNGEDGFETFITI 431 >UniRef50_A0NNP2 Signal transduction histidine kinase n=2 Tax=Labrenzia RepID=A0NNP2_9RHOB Length = 453 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 54/197 (27%), Positives = 93/197 (47%), Gaps = 7/197 (3%) Query: 360 EERATIARELHDSLAQVLSYLRIQLTLLKRSI---PEDNATAQSIMADFSQALNDAYRQL 416 +ER ++ ELHDS++Q+L +R + ++ PE A A + + + R Sbjct: 249 QERKRVSTELHDSISQLLVSVRYGVEMIHSEANREPELQAQAAKCLKTLDGTIAEVRRIS 308 Query: 417 RELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIRE 476 R+L + L L +AL + QNQ+ + + L + L ++++E Sbjct: 309 RDLRPS---VLDDMGLAAALGSLGKEFQNQSGITVNVQAEQCHSRLSEGAKTALYRVVQE 365 Query: 477 AVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLG 536 + N +H++ASE+A+S + + DNG+G+ P G G MRER E G Sbjct: 366 CMTNVARHSHASEVAISLKVGVQ-QLVLSVEDNGVGLPRPLPKSGGLGFRNMRERIETYG 424 Query: 537 GTLTFSQPSGGGTLVSI 553 G LT S+ + GGT + + Sbjct: 425 GRLTLSRRASGGTRIKV 441 >UniRef50_C1F5E9 Two-component system sensor protein, putative n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F5E9_ACIC5 Length = 987 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 62/200 (31%), Positives = 91/200 (45%), Gaps = 9/200 (4%) Query: 359 MEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRE 418 M ER IARELHD+L Q + L + ++ S + + + ++L+ A R L Sbjct: 770 MTERMRIARELHDTLLQAMQGLVLSIS----SFSSQAVVSSEVREELERSLDHADRLLVS 825 Query: 419 LLTTFRLTLQQADLPSALREMLDTLQNQ----TSAKLTLDCRLPTLALDAQMQVHLLQII 474 R + L L TL +Q S+K+ C + A + +L I Sbjct: 826 GRNRIRDLRGEGGESETLLASLSTLVSQIFGSASSKVRFTCEGIARPIHAFAREEVLMIA 885 Query: 475 REAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAER 534 EA+ NA H++A E+ V V+ D + IRDNG G PEGH+G+ MRERA Sbjct: 886 SEALSNACFHSDADEVQVQ-VSYHDNAFRIAIRDNGNGFDAGASPEGHFGIRGMRERAAD 944 Query: 535 LGGTLTFSQPSGGGTLVSIS 554 +G L G GT V ++ Sbjct: 945 IGAHLEVQSAPGHGTEVCVT 964 >UniRef50_A1HRV6 Integral membrane sensor signal transduction histidine kinase n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRV6_9FIRM Length = 473 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 58/196 (29%), Positives = 99/196 (50%), Gaps = 7/196 (3%) Query: 360 EERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLREL 419 +ER I+RELHD Q+L+ L + LL + + + ++ + +A LR++ Sbjct: 268 DERKRISRELHDETGQLLASLLAYMKLLLSKLTDQQQ--KELLQEARDVAVNALEGLRKI 325 Query: 420 LTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAV 478 R L + +A+++ + T Q K+ L LD ++ + L +I++E++ Sbjct: 326 AVELRPPVLDDLGVTAAMQKYIQTFSGQQGLKVHFSVPEKQLELDPEVSLALYRILQESL 385 Query: 479 LNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGH---YGLNIMRERAERL 535 N KHA AS + V C++A + +RD+G+GI E G G+ M+ERAE L Sbjct: 386 TNIAKHARASNVYV-CLSAAGQTVRLVVRDDGLGIDGGLESAGQKNRLGIYGMKERAELL 444 Query: 536 GGTLTFSQPSGGGTLV 551 GG+L +G GT+V Sbjct: 445 GGSLDIHSENGCGTVV 460 >UniRef50_D0XXF2 Histidine kinase n=1 Tax=Caulobacter segnis ATCC 21756 RepID=D0XXF2_9CAUL Length = 1009 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 62/199 (31%), Positives = 100/199 (50%), Gaps = 7/199 (3%) Query: 359 MEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRE 418 + ER IARELHD+L Q + L + R +P D + +A + R+ Sbjct: 782 IAERERIARELHDTLLQGVQGLILTFQSAARQVPADLPARNQLERALDRA-EAVVVEARD 840 Query: 419 LLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAV 478 + + R+++ DL + LR + D++++ A++ +AL + + +I+ EA+ Sbjct: 841 RVRSLRVSVG-GDLMTTLRAVADSMRSDGGAEVVTTAVGRPIALHPLVADEVERIVVEAL 899 Query: 479 LNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIG----EPKEPEGHYGLNIMRERAER 534 NA +HA AS I V VT + IRDNG+GI E +GH+GL MRERA + Sbjct: 900 FNAHRHARASHIDV-IVTFESKRLLINIRDNGVGIDPAVLEVGGRDGHFGLAGMRERARK 958 Query: 535 LGGTLTFSQPSGGGTLVSI 553 + +LT +G GT V + Sbjct: 959 IRASLTVRSSAGAGTDVEL 977 >UniRef50_C0GJ71 Integral membrane sensor signal transduction histidine kinase n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJ71_9FIRM Length = 468 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 59/193 (30%), Positives = 92/193 (47%), Gaps = 8/193 (4%) Query: 360 EERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLREL 419 EER + E+HD + Q L ++ L R+ PE I+ D + LN+ + RE Sbjct: 261 EERRKLGMEIHDGIIQGLYAAGLKAEYLNRNKPE--GKQGEILQDIKRDLNNTIDKTREF 318 Query: 420 LTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLA---LDAQMQVHLLQIIR 475 L L ++ DL +L+++ D + +S + L CR+P L L + + I++ Sbjct: 319 LAASSLEVIEVEDLIDSLQQLADRFKMSSSLNIDLQCRVPLLTLGQLSPEKTTQIYYIVQ 378 Query: 476 EAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPE-GHYGLNIMRERAER 534 EA+ N +KHA A+ V + A V + D+GIGI K + GH GL M RA++ Sbjct: 379 EALSNVIKHAQATSAEV-VLEAKYDYLLVQVVDDGIGIENDKGNDAGHMGLEAMEHRAKK 437 Query: 535 LGGTLTFSQPSGG 547 GTL G Sbjct: 438 AEGTLKVENTKKG 450 >UniRef50_A9AX02 Integral membrane sensor signal transduction histidine kinase n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AX02_HERA2 Length = 438 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 71/210 (33%), Positives = 110/210 (52%), Gaps = 11/210 (5%) Query: 354 QQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAY 413 ++L + ER +ARELHD+LA LS L +QL K + T+ + A Sbjct: 232 ERLAISRERNRVARELHDTLAHALSGLIVQLEAAKLYREIEPTTSHKLQDSALDAARHGL 291 Query: 414 RQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDC----RLPTLALDAQMQV 468 ++ R L R L L ALR++ + L + +A+LTLD +LP LAL+ + V Sbjct: 292 QETRLALKALRARPLDDLGLALALRQLAEQLAS--TAQLTLDLSISPKLPPLALEVETCV 349 Query: 469 HLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIG-EPKEPEGHYGLNI 527 + ++ +EA+ NA++HANA+ + VS +T D + +RD+G G + H+GL Sbjct: 350 Y--RVAQEALRNAIRHANANRLDVS-LTCIDTELCLVVRDDGCGFEFQSFSTADHFGLAG 406 Query: 528 MRERAERLGGTLTFSQPSGGGTLVSISFRS 557 M ERA LGG L+ + G GT V + F + Sbjct: 407 MHERAAELGGQLSINSQLGLGTWVELRFTT 436 >UniRef50_Q8ERY5 Two-component sensor histidine kinase n=1 Tax=Oceanobacillus iheyensis RepID=Q8ERY5_OCEIH Length = 356 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/199 (28%), Positives = 103/199 (51%), Gaps = 5/199 (2%) Query: 358 LMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLR 417 ++EER IAR+LHD+++Q L L + + + A++ M + SQ+ + A ++R Sbjct: 148 VIEERQRIARDLHDAVSQELFALAMLSEAAIKQLDLKPELAKAQMLEVSQSAHQAQTEMR 207 Query: 418 ELLTTFR-LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIRE 476 LL R + L L L ++++ L+ +++ + TL L + ++ H+ +I+ E Sbjct: 208 ALLLHLRPVYLSGESLIEGLHKLINELKQKSNLQFTLKFD-DQLEMQETIEEHIFRIVPE 266 Query: 477 AVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIG--EPKEPEGHYGLNIMRERAER 534 ++ N ++HANA+E+ V ++ + I DNG G + YGL M+ER+E Sbjct: 267 SLSNILRHANATEVYVE-ISKKSEEIFILIEDNGEGFDMTGTSGKKTSYGLKTMKERSEE 325 Query: 535 LGGTLTFSQPSGGGTLVSI 553 +GGT T GT + I Sbjct: 326 IGGTFTVRSNVDEGTYIQI 344 >UniRef50_A3DEX1 Histidine kinase n=5 Tax=Clostridium RepID=A3DEX1_CLOTH Length = 392 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 53/202 (26%), Positives = 99/202 (49%), Gaps = 8/202 (3%) Query: 360 EERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLREL 419 EER +ARE+HD AQ +S + ++ + +R + D A+ + + D R +R++ Sbjct: 180 EERQRVAREIHDGPAQSMSNIVLKAEICERLVDSDPEKAKDELRTLKSVVRDTLRDVRKI 239 Query: 420 LTTFR-LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAV 478 + R ++L L L+ ++T + ++ K+T R L + + + ++++EAV Sbjct: 240 IYDLRPMSLDDLGLIPTLQRYIETCREESGIKITFKTRGTCEQLKPVVSLTVFRLVQEAV 299 Query: 479 LNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGI------GEPKEPEGHYGLNIMRERA 532 N KHA A ++ ++ + + +YI DNG+G ++ +GL MRER Sbjct: 300 NNIKKHARADKVTIN-LEFLEKELKLYIADNGVGFDFDSLKSNEEDINKGFGLISMRERV 358 Query: 533 ERLGGTLTFSQPSGGGTLVSIS 554 E L G G GT ++I+ Sbjct: 359 ELLDGKFEIDSAVGKGTRLNIT 380 >UniRef50_Q1J3L3 Periplasmic sensor signal transduction histidine kinase n=1 Tax=Deinococcus geothermalis DSM 11300 RepID=Q1J3L3_DEIGD Length = 412 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 56/196 (28%), Positives = 98/196 (50%), Gaps = 5/196 (2%) Query: 354 QQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAY 413 ++L ++ ER +ARELHD+L L+ + +QL +R + ++ A+++ A Sbjct: 204 EELAMLRERTRLARELHDTLGHALTTITVQLEAGERLLEKNPQKARTLFERSRDLSRSAT 263 Query: 414 RQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQI 473 +LR L R + ++ S E+ ++ +D ++ ++L Q + L ++ Sbjct: 264 AELRASLGELR----RGEMGSLGDELRALARSGDPDGPQVDVQVAEVSLSPQQEHALARV 319 Query: 474 IREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAE 533 REA+ N +HA A+ + + P+G + + D+G+G P GHYGL+ MRER Sbjct: 320 AREALHNVRRHAGAAHVRLDLRRTPEG-LVLQVTDDGLGFDPSLVPAGHYGLSGMRERLA 378 Query: 534 RLGGTLTFSQPSGGGT 549 LGG LT G GT Sbjct: 379 LLGGHLTIDSQPGQGT 394 >UniRef50_C6IW91 Histidine kinase dimerization and phosphoacceptor region n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IW91_9BACL Length = 287 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 64/213 (30%), Positives = 106/213 (49%), Gaps = 12/213 (5%) Query: 359 MEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRE 418 +E+R +ARELHD +AQ L L +++ +R + A + +++++ R +RE Sbjct: 78 LEQREQLARELHDGIAQSLFLLSVKVDRAERQ--QQAAGSSYDWNGLRKSIHEVNRYVRE 135 Query: 419 LLTTFRLTLQ----QADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQII 474 ++ R+ +AD +++ ++ + + L LD +L A+ ++ L+ + Sbjct: 136 AISDLRIPPDSREGEAD-EASMSAIVRRIAVEQQLTLHLDWQLEEAGWPAKAKMELVSCL 194 Query: 475 REAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIG-EPKEPEGHYGLNIMRERAE 533 REAV+NA KHA I +S + + TV I D+G G E G YGL IMRER Sbjct: 195 REAVINAAKHAGVQAIEISA-SGDAQDFTVTITDHGCGFAQEGAARPGRYGLQIMRERTN 253 Query: 534 RLGGTLTF-SQPSGGGTLVSISFRSAEGEESQL 565 +G LT SQP G T + I E S++ Sbjct: 254 EMGWELTVASQP--GETTIQIRGGGGSDEGSRV 284 >UniRef50_A1WDW7 Multi-sensor signal transduction histidine kinase n=14 Tax=cellular organisms RepID=A1WDW7_VEREI Length = 468 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 63/202 (31%), Positives = 103/202 (50%), Gaps = 5/202 (2%) Query: 352 HFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALND 411 H QQ+ +ER +ARELHD L +L+ ++ + LK + +A +Q LN Sbjct: 260 HLQQVR-EQERGHLARELHDELGALLTAAKLDVARLKSKLDAAAPDIAERLAHLTQTLNS 318 Query: 412 AYRQLRELLTTFR-LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHL 470 R ++ R +L L +AL E+L T + A + ++ L ++ L +Q+ + Sbjct: 319 GIALKRRIIEDLRPSSLSNLGLTAAL-EIL-TREFAGHAGIEVETSLESVQLPEAVQLTV 376 Query: 471 LQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRE 530 ++++EA+ N K+A A ++ VS P G+ V +RD+G G P +GL MR Sbjct: 377 YRMVQEALTNIGKYAKAQQVLVSVHAHP-GHVAVQVRDDGQGFDPAALPPTSHGLAGMRH 435 Query: 531 RAERLGGTLTFSQPSGGGTLVS 552 R E GG L+ + GGGTL+S Sbjct: 436 RVEAAGGRLSITSRPGGGTLLS 457 >UniRef50_B4STB9 Integral membrane sensor signal transduction histidine kinase n=3 Tax=Stenotrophomonas RepID=B4STB9_STRM5 Length = 404 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 66/218 (30%), Positives = 106/218 (48%), Gaps = 25/218 (11%) Query: 342 RGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSI 401 R + +Q ++L ER I R+LHD L LS + ++L L ++ D+ A+ Sbjct: 184 RDVALQLSQDEVRRLATTAERERIGRDLHDLLGHTLSLITLKLELARKLYDRDDERARQE 243 Query: 402 MADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTL- 460 + + +A Q+R +T R +DL L SA+L L+C+ L Sbjct: 244 IGEAEAIAREALAQVRSAVTGIR----ASDLAGEL----------ASARLLLECQQVHLQ 289 Query: 461 -----ALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGE 515 A+ +++ L ++REA N ++HA A+ + V + D + IRD+G G Sbjct: 290 YTAPPAMPVEVERGLALVLREAATNIVRHAQATRVQVDFMLE-DRQLAMQIRDDGRG--- 345 Query: 516 PKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSI 553 + EG+ GL+ MRERA LGG LT P G GTL+++ Sbjct: 346 GVQAEGN-GLSGMRERAAALGGQLTLQSPRGEGTLLTV 382 >UniRef50_C8WYI2 Histidine kinase n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WYI2_ALIAD Length = 223 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/196 (28%), Positives = 97/196 (49%), Gaps = 4/196 (2%) Query: 357 LLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQL 416 +L EER IAR+LHD Q L+ + ++L +LK + + A+ + + + +A +++ Sbjct: 18 MLEEERRRIARDLHDGPVQALTNISMKLEVLKHMLDSNPQIAKDQVDQLHRRVTEAVKEI 77 Query: 417 RELLTTFR-LTLQQADLPSALREMLDTLQNQ--TSAKLTLDCRLPTLALDAQMQVHLLQI 473 R L+ R L + + L A + + + S + + + + QV L ++ Sbjct: 78 RALIYDLRPLAVDEVGLIEATKALCSQFEKNWGISTSFVVQDGVTSAEITPAKQVALYRL 137 Query: 474 IREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAE 533 I+E + N KHA A+ V + + + + ++D+G+G P GHYGL M+ERAE Sbjct: 138 IQEILNNIKKHARATTTVVEFLR-DESDLIITVKDDGVGFDTNYVPPGHYGLIGMKERAE 196 Query: 534 RLGGTLTFSQPSGGGT 549 LGG L G G+ Sbjct: 197 FLGGRLEIHSIIGQGS 212 >UniRef50_C1CWD4 Putative histidine kinase, classic; putative membrane protein n=1 Tax=Deinococcus deserti VCD115 RepID=C1CWD4_DEIDV Length = 575 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 68/230 (29%), Positives = 116/230 (50%), Gaps = 7/230 (3%) Query: 332 LLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSI 391 L S++ G L+ +Q + +ERA +ARELHDS+AQ L + + + ++ Sbjct: 338 FLLSIADHAGTALHASQLIERAGARAGEQERARLARELHDSVAQALYGITLGAKTARATL 397 Query: 392 PEDNATAQSIMADFSQALNDA-YRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSA 449 D A+ + D++ L + +++ LL + R L++ L +AL + L+ + Sbjct: 398 DRDPGRARESL-DYTIRLAEGGVSEMKALLFSLRPDALEEGGLIAALTQHAHALEARHGL 456 Query: 450 KLTLDCRL-PTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRD 508 ++ + R P L DAQ + ++ +EA+ N +KHA A+++ + CV G TV +RD Sbjct: 457 RVHAELRAEPHLTPDAQAAAY--RVAQEALHNVVKHARATQVWL-CVHESLGVVTVSVRD 513 Query: 509 NGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSA 558 +G G + G G MRERA GGTL G GT+V++ +A Sbjct: 514 DGRGFDPASQGRGTLGQRSMRERAAGAGGTLDVQSAPGEGTIVTLRIPAA 563 >UniRef50_C1B0L5 Two-component histidine kinase n=5 Tax=Rhodococcus RepID=C1B0L5_RHOOB Length = 559 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 73/243 (30%), Positives = 116/243 (47%), Gaps = 25/243 (10%) Query: 314 TVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSL 373 T G W V+ L SV+ + + F+ Q + L ++ +R IAR+LHD++ Sbjct: 323 TARGTTAWDPDEVAR----LESVADLAAVAVEFSDQQSKQRLLSVLADRDRIARDLHDNV 378 Query: 374 AQVL--SYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQAD 431 Q L + + +Q T +P+ +SI+A + L+ R +RE+ TT LQ Sbjct: 379 IQRLFATGMSLQSTHAVGDVPDG---VRSIVATAVEQLD---RTVREIRTTI-FDLQATG 431 Query: 432 LPSAL---REMLDTLQNQTSAKLTLDCRLPTLALD----AQMQVHLLQIIREAVLNAMKH 484 + SA R +LD + + TS T A+D +++ H ++REA+ NA++H Sbjct: 432 VASATSLRRRLLDVIGDLTSHSPVAPNVQFTGAIDTLVPSRIHPHAEAVLREALSNALRH 491 Query: 485 ANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQP 544 A A+ I +S D TV + D+GIGI + GL+ + RAE GGT T Sbjct: 492 ARATTIDISVAAGDD--LTVTVADDGIGIADGAR---RSGLDNLDRRAEHCGGTCTVDSA 546 Query: 545 SGG 547 GG Sbjct: 547 DGG 549 >UniRef50_A5UUR7 Multi-sensor signal transduction histidine kinase n=2 Tax=Roseiflexus RepID=A5UUR7_ROSS1 Length = 469 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/195 (28%), Positives = 93/195 (47%), Gaps = 4/195 (2%) Query: 358 LMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLR 417 + EERA IAR++HD +AQ L+++R+++ L I D ++ + + L + R+LR Sbjct: 257 IAEERARIARDIHDGIAQSLAFMRMRVDLWLDWIEHDPQRLRAELLELKTTLREQIRELR 316 Query: 418 ELLTTFR-LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIRE 476 + R + + LR + Q + + +D + +++ ++++E Sbjct: 317 RAIFALRPVQFDELGFVGGLRRYIVEFAGQHNWDIDVDLTGTPSTIPPEIEAVAFRVVQE 376 Query: 477 AVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPE--GHYGLNIMRERAER 534 A+ N KHA A+ + V +G V +RD+G G P+ GH GL MRER Sbjct: 377 ALTNVAKHAAATRVEVMIGRVDEGLQIV-VRDDGRGFDPGALPDAPGHVGLRQMRERLAA 435 Query: 535 LGGTLTFSQPSGGGT 549 L G LT G GT Sbjct: 436 LRGQLTILSRPGAGT 450 >UniRef50_A0L9F0 Multi-sensor signal transduction histidine kinase n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L9F0_MAGSM Length = 841 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 57/206 (27%), Positives = 103/206 (50%), Gaps = 7/206 (3%) Query: 351 KHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALN 410 +H + L +EER + LH+S+ Q L +++ L + +S+ + A+ + D L Sbjct: 635 RHLKNKLEIEERKRLGNLLHESICQSLQAIKLGLEM--KSLVAEQASIS--LKDEVGELQ 690 Query: 411 DAYRQLRELLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVH 469 D QLR++ T R + L++ +L A R L L L LDA++ + Sbjct: 691 DCIGQLRDITTVLRPSFLERMNLEEATRWWCHRLSRNWEGTLDLHTSGNFNELDAEITYN 750 Query: 470 LLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIG--IGEPKEPEGHYGLNI 527 L +I++E + NA+KHA A + + T+ + D+G+G + + + GL+I Sbjct: 751 LFRILQEGLTNALKHAQAKVLQIELSHVEGEGFTLVVADDGVGMDLAQTRRTAKGLGLSI 810 Query: 528 MRERAERLGGTLTFSQPSGGGTLVSI 553 + E+AERLGGT F+ G ++++ Sbjct: 811 IYEQAERLGGTAHFTTAPQQGLIIAV 836 >UniRef50_O32198 Sensor histidine kinase liaS n=5 Tax=Bacillus RepID=LIAS_BACSU Length = 360 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 58/217 (26%), Positives = 106/217 (48%), Gaps = 9/217 (4%) Query: 350 QKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPE-DNATAQSIMADFSQA 408 Q ++ ++ EER +AR+LHD+++Q L + + + + + + D+ T + I Sbjct: 139 QAQMKKSVISEERQRLARDLHDAVSQQLFAISMMTSAVLEHVKDADDKTVKRIRM-VEHM 197 Query: 409 LNDAYRQLRELLTTFR-LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQ 467 +A ++R LL R +TL+ L L E+LD + + + D + A+ ++ Sbjct: 198 AGEAQNEMRALLLHLRPVTLEGKGLKEGLTELLDEFRKKQPIDIEWDIQ--DTAISKGVE 255 Query: 468 VHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNI 527 HL +I++EA+ N +H+ AS++ V + + + + DNG G + YGLN Sbjct: 256 DHLFRIVQEALSNVFRHSKASKVTV-ILGIKNSQLRLKVIDNGKGFKMDQVKASSYGLNS 314 Query: 528 MRERAERLGGTLTFSQPSGGGTLVSIS---FRSAEGE 561 M+ERA +GG G GT + + F +GE Sbjct: 315 MKERASEIGGVAEVISVEGKGTQIEVKVPIFPEEKGE 351 >UniRef50_Q1IXN3 Periplasmic sensor signal transduction histidine kinase n=2 Tax=Deinococcus RepID=Q1IXN3_DEIGD Length = 564 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 71/234 (30%), Positives = 119/234 (50%), Gaps = 8/234 (3%) Query: 332 LLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSI 391 L S++ G L+ + + + +ERA +ARELHDS+AQ L + + + ++ Sbjct: 333 FLLSIADHAGTALHAAELIRRASERAEEQERARLARELHDSVAQALYGITLGAKTARATL 392 Query: 392 PEDNATAQSIMADFSQALNDA-YRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSA 449 D ++ + D++ L + +++ LL + R L++ L +AL + L+ + Sbjct: 393 GRDPEKTRASL-DYTIRLAEGGVSEMKALLFSLRPDALEEGGLVAALMQNAHALEARHGL 451 Query: 450 KLTLD-CRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRD 508 + D R P L+ AQ + ++ +EA+ N +KHA AS++ +S V G T+ +RD Sbjct: 452 TVHADLGREPRLSPTAQAAAY--RVAQEALHNVVKHARASQVWLS-VREEAGRVTLEVRD 508 Query: 509 NGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEE 562 +G G P G G MRERA+ GGTLT G GT V++ +A GEE Sbjct: 509 DGRGFDPAALPGGTLGQRSMRERAQGTGGTLTVHSSPGAGTTVTLILPAA-GEE 561 >UniRef50_UPI0001B54039 histidine kinase n=1 Tax=Streptomyces sp. AA4 RepID=UPI0001B54039 Length = 443 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 67/208 (32%), Positives = 99/208 (47%), Gaps = 22/208 (10%) Query: 358 LMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLR 417 +++ER +++E+HD+LAQ + + QL E A A+ A++ + L A + R Sbjct: 227 VLDERQRLSQEIHDTLAQGFTGIITQL--------EAAAQARDDTAEWERHLAAATQLAR 278 Query: 418 ELLTTFRLT--------LQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVH 469 E LT R + L+ A LP AL E+ +T + L +++ Sbjct: 279 ENLTAARRSVAALRPEPLEAATLPEALAEVARLWSERTGVPAEFSTTGTAVPLHPELEAT 338 Query: 470 LLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEP-----EGHYG 524 LL+I +EA+ N KHA AS ++ D T+ RD+G+G P EG +G Sbjct: 339 LLRITQEALSNVAKHARASRAGITLSYMGD-EVTLDARDDGVGFDPAHPPAPPSAEGGHG 397 Query: 525 LNIMRERAERLGGTLTFSQPSGGGTLVS 552 L MR RAERL G L GGGT VS Sbjct: 398 LPGMRRRAERLAGALHVESEPGGGTAVS 425 >UniRef50_Q21XA3 Histidine kinase n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21XA3_RHOFD Length = 293 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 59/216 (27%), Positives = 98/216 (45%), Gaps = 16/216 (7%) Query: 352 HFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALND 411 H Q +ER +AR LHD L +L+ ++ +K + + A ++A LN Sbjct: 76 HHLQTAREDERHRLARNLHDDLGALLTSAKLDAARIKSRLADRAPEALELLAHLVSTLNS 135 Query: 412 AYRQLRELLTTFRLTLQQADLPSALREM-----LDTLQNQTS--AKLTLDCRLPTLALDA 464 R ++ R PSAL + L+ L + + + + + C L + L+ Sbjct: 136 GIALGRSIIEDLR--------PSALSNLGLVATLEILTREFAEISGVAVHCELEPVELEV 187 Query: 465 QMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYG 524 ++ + ++++EA+ N K+A A + V T +G V +RD+GIG +P YG Sbjct: 188 SAELMVYRLVQEAITNITKYARAQNVWVRLAT-DNGQVEVSVRDDGIGFDTSVQPRSAYG 246 Query: 525 LNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEG 560 L MR R E GGTL G GTL+ ++ G Sbjct: 247 LVGMRFRVEAEGGTLALVSAPGQGTLIQVNLTPVHG 282 >UniRef50_Q1AZP1 Periplasmic sensor signal transduction histidine kinase n=2 Tax=Actinobacteria (class) RepID=Q1AZP1_RUBXD Length = 508 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/211 (28%), Positives = 100/211 (47%), Gaps = 8/211 (3%) Query: 358 LMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLR 417 ++EER +A E+HD+LAQ + + L ++ D A + + ++ + R Sbjct: 294 VLEERQRLAHEIHDTLAQGFTSIVTNLEAAGGALQRDRAALRRHLEQALAVARESLSEAR 353 Query: 418 ELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIRE 476 L+ R L++A LP ALR + + + + AL A +V LL++ +E Sbjct: 354 RLVWALRPEPLEEAPLPEALRRLAARWSSSSGIPARVLVTGEPRALPADPEVTLLRVAQE 413 Query: 477 AVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPE-----GHYGLNIMRER 531 A+ N KHA A +A++ D + +RD+G+G +P P +GL MRER Sbjct: 414 ALANVRKHARAGRVAITLSYIGD-RVALDVRDDGVGF-DPAAPSPGDDGSGFGLRSMRER 471 Query: 532 AERLGGTLTFSQPSGGGTLVSISFRSAEGEE 562 R GGTL+ G GT++S +A E Sbjct: 472 VGRAGGTLSVESAPGEGTVLSAEVPAAGAAE 502 >UniRef50_B7KQU6 Histidine kinase n=5 Tax=Methylobacterium RepID=B7KQU6_METC4 Length = 404 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 64/198 (32%), Positives = 101/198 (51%), Gaps = 14/198 (7%) Query: 361 ERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMAD-FSQALNDAYRQLREL 419 ER +ARELHD Q L++L++QL L+R+ A D S +L R+LR + Sbjct: 205 ERERLARELHDEAGQQLAWLKLQLDRLRRAPSPTQVEAMLKQVDAISASLRQVVRELRPV 264 Query: 420 LTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVL 479 TL + L AL ++ +Q++ + T+ L +++V + ++++EA+ Sbjct: 265 ------TLTELGLILALGGLVREWSDQSAIPIDFQLSGTTVRLTPEIEVTIFRLVQEALT 318 Query: 480 NAMKHA-NASEIAVSCVTAPDGNHTVYIRDNGIGIG-----EPKEPEGHYGLNIMRERAE 533 N +KHA A ++V+ A G T+ I D+G G+ E + G +GL MRER Sbjct: 319 NVVKHAPGARHVSVTLQYASTGV-TLAIEDDGPGLACEQAHEARRAGGGFGLAGMRERLT 377 Query: 534 RLGGTLTFSQPSGGGTLV 551 LGGTL P GGGT + Sbjct: 378 LLGGTLMIESPPGGGTTI 395 >UniRef50_C1F446 Histidine kinase domain protein n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F446_ACIC5 Length = 363 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 66/211 (31%), Positives = 102/211 (48%), Gaps = 14/211 (6%) Query: 343 GLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIM 402 G+ A + QL + ER IAR+LHD L LS + ++ L R D+ A+ + Sbjct: 149 GMKLMLAHQELAQLAKVAERERIARDLHDLLGHTLSVVVLKAELAGRYFDRDHERARQEI 208 Query: 403 ADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLAL 462 A+ A +Q+RE +T FR+ A++ +A R + +A + L C L Sbjct: 209 AEVESISRQALQQVREAVTGFRMQGLDAEVDNAQRSL-------AAAGIKLTCMTRPGRL 261 Query: 463 DAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGH 522 + L I+REA+ N ++HA A+E+ + + +G + + DNG G EG+ Sbjct: 262 GPAEESVLSLILREAITNVLRHAQATEVRLEFTSTSEGER-LTVTDNGRG---GIRQEGN 317 Query: 523 YGLNIMRERAERLGGTLTFSQPSGGGTLVSI 553 GL MRER + LGG F S GT +SI Sbjct: 318 -GLRGMRERVQMLGG--RFRLDSTRGTSISI 345 >UniRef50_UPI000178A79F integral membrane sensor signal transduction histidine kinase n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178A79F Length = 275 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 90/182 (49%), Gaps = 10/182 (5%) Query: 359 MEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRE 418 M ER I RELHD +AQ L L Q+ +++S + Q I ++++ +RE Sbjct: 78 MHEREKIGRELHDGIAQSLFLLNAQIDRIEKSGRTGDIPYQEI----KESVHRTNTYVRE 133 Query: 419 LLTTFRLTLQQADLP--SALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIRE 476 + R +P ++ +++ ++ +T + +P L A+ +V LL IRE Sbjct: 134 AIANLRYPADPQAIPWMHSMSSLIEEIKQETDLHFDIKWGIPDAMLSAKEKVELLASIRE 193 Query: 477 AVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEG--HYGLNIMRERAER 534 ++LN KHA A + ++ T G H + D+G G K P G YG+ IM++RAE Sbjct: 194 SLLNIHKHAEAKHVKITANTTDSGWHCT-VTDDGKGFDLDK-PLGSNRYGIKIMKDRAEA 251 Query: 535 LG 536 +G Sbjct: 252 MG 253 >UniRef50_Q747N5 Sensory box histidine kinase n=2 Tax=Geobacter RepID=Q747N5_GEOSL Length = 518 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 64/205 (31%), Positives = 103/205 (50%), Gaps = 8/205 (3%) Query: 361 ERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELL 420 ER ++RELHD L Q+L+ L+I L + + + Q + S++LN++ +R L Sbjct: 288 ERKRLSRELHDDLGQLLNALKIGFDTLAEDLRQPSHDVQDRLWYLSESLNNSIHTIRRLC 347 Query: 421 TTFR-LTLQQADLPSALREMLDTLQNQTSAKLTLDC-RLPTLALDAQMQVHLLQIIREAV 478 TL++ L +R+ S + L C + + L++ +++L +I +EA+ Sbjct: 348 AGLHPSTLERLGLAETIRQQCTQAATTHSLDIELKCGTMLGVRLESDTEINLYRIFQEAL 407 Query: 479 LNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIG--EPKEPEGHY-GLNIMRERAERL 535 N +KHA+A+ + V V A + I DNG G + E GH+ GL M ER E L Sbjct: 408 HNVVKHADATRVMVRLV-ASHPTVRLQIEDNGGGFSMEDYAELSGHHLGLISMAERVELL 466 Query: 536 GGTLTFSQPSGGGTLVSIS--FRSA 558 GGT + G GT V++ FR A Sbjct: 467 GGTFQIASLPGLGTAVTVEVPFRKA 491 >UniRef50_B1Y742 Response regulator receiver sensor signal transduction histidine kinase n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1Y742_LEPCP Length = 384 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 76/253 (30%), Positives = 118/253 (46%), Gaps = 23/253 (9%) Query: 314 TVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKH--FQQLLLM--EERATIAREL 369 +V+ +LH +N+ + + S R + ++A+ H + M +ER IARE+ Sbjct: 122 SVFVDLHRKNTELRHEVAVRRSAE----RQVRESEARLHALTSHFITMREKERTAIAREI 177 Query: 370 HDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRL-TLQ 428 HD L QVL+ L++ + L R D+A + S+ ++D R +R++ R L Sbjct: 178 HDELGQVLTVLKMDIAWLARH--PDDARLRVKTDAMSRLIDDTIRSVRKISAGLRPEVLD 235 Query: 429 QADLPSALREMLDTLQNQTSAKLTLDCR--LP--TLALDAQMQVHLLQIIREAVLNAMKH 484 L SA+ Q +T + CR LP T D + L +I +E + N +H Sbjct: 236 DMGLVSAIAWQTTEFQKRTGVR----CRSALPPETEVFDKDLSNTLFRIFQEILTNVARH 291 Query: 485 ANASEIAVSCVTAPDGNHTVYIRDNGIGI--GEPKEPEGHYGLNIMRERAERLGGTLTFS 542 A+A+ + V A D + + DNG+GI E P GL M ERA RLGGT+ Sbjct: 292 AHATRLDVELRQAGD-RLVLKVADNGVGIVVQEANAPTT-LGLLGMHERALRLGGTVAID 349 Query: 543 QPSGGGTLVSISF 555 G GT V +S Sbjct: 350 GEPGAGTRVRVSI 362 >UniRef50_A7NRQ7 Integral membrane sensor signal transduction histidine kinase n=1 Tax=Roseiflexus castenholzii DSM 13941 RepID=A7NRQ7_ROSCS Length = 682 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 63/205 (30%), Positives = 107/205 (52%), Gaps = 11/205 (5%) Query: 355 QLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYR 414 ++ +EER +ARELHDS++Q L + + + + D A + Sbjct: 480 KMAALEERQRLARELHDSVSQALYGIALGARTAQTQLERDPARLGEPLEYILSLAEAGLS 539 Query: 415 QLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRL---PTLALDAQMQVHL 470 ++R L+ R +LQ L +AL + D L+ + KL + R P ++L+A+ ++ Sbjct: 540 EMRALIFELRPESLQTEGLVAALTKQSDALRARH--KLDVVTRFDPEPEISLEAKEALY- 596 Query: 471 LQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEP-EGHYGLNIMR 529 +I +EA+ N +HA+A+ + +S + A DG T+ IRDNG G +P +P GH GL M Sbjct: 597 -RIAQEAMHNVARHAHATRVELSLLNA-DGALTLEIRDNGKGF-DPAQPYPGHLGLKSMP 653 Query: 530 ERAERLGGTLTFSQPSGGGTLVSIS 554 ERA +GG G GT+++++ Sbjct: 654 ERAAHIGGAFHIESRPGAGTVITVT 678 >UniRef50_Q38VV9 Two-component system, sensor histidine kinase n=54 Tax=Bacilli RepID=Q38VV9_LACSS Length = 354 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 64/204 (31%), Positives = 107/204 (52%), Gaps = 13/204 (6%) Query: 357 LLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPE--DNATAQSIMADFSQALNDAYR 414 +L +ER +ARELHDS++Q L + L+ L + DN + + LNDA Sbjct: 148 ILAQERHRLARELHDSVSQQLFAATMMLSALSEVAQKQADNPQLLQSLTTVERVLNDAQS 207 Query: 415 QLRELLTTFR-LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQI 473 ++R LL R +TL+ L + ++L+ L+ + + ++T D + + L + ++ +L +I Sbjct: 208 EMRALLLHLRPVTLEGKSLRDGIIQLLNELKTKIAVEITWD--IDNVTLPSGIEDNLFRI 265 Query: 474 IREAVLNAMKHANASEIAVSCVTAPDGNHTVYIR--DNGIGIGEPK--EPEGHYGLNIMR 529 ++E + N ++HA A EI V TV ++ D+G G +PK + G YGLN + Sbjct: 266 VQELLSNTLRHAKAQEIEVYL---KKIGQTVLLKVMDDGQGF-DPKVAQKAGSYGLNNIT 321 Query: 530 ERAERLGGTLTFSQPSGGGTLVSI 553 ERA+ +GGT GT V I Sbjct: 322 ERAQSVGGTAKIISLPNQGTSVEI 345 >UniRef50_Q21Y83 Putative PAS/PAC sensor protein n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21Y83_RHOFD Length = 495 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 66/231 (28%), Positives = 111/231 (48%), Gaps = 13/231 (5%) Query: 346 FNQAQKHFQQL---LLMEERATI---ARELHDSLAQVLSYLRIQLTLLKRSIPEDNATA- 398 F Q++ +L L+ +E+ + A+ LHD L Q L+ +R+ ++ P+D A Sbjct: 262 FRQSRAQLSELTQRLMTQEKTLVKQLAKTLHDQLGQTLAAVRMAHETIQAVQPKDTPVAV 321 Query: 399 QSIMADFSQALNDAYRQLRELLTTFRLTL-QQADLPSALREML---DTLQNQTSAKLTLD 454 Q A + + A +Q+R++L R L + L +AL L Q Q + + Sbjct: 322 QRQQAQLGKLVGHAIQQVRQVLVDLRPPLLEDQGLVAALDNELRNRSLTQPQIDFSIDVP 381 Query: 455 CRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGI- 513 + + +++ + REA+ NA++HANAS IAV V + + + DNG+GI Sbjct: 382 PEIEPMRWPGEVEYAAFMVAREALENALRHANASAIAVRLVGTQQ-SLQLQVSDNGVGIP 440 Query: 514 GEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEESQ 564 P GH G+ M ERA+ +G T+T G GT VS ++ +S+ Sbjct: 441 AGAAVPSGHLGVFGMHERAQAIGATVTVGAGEGRGTCVSFYWQPEPDSDSE 491 >UniRef50_B2UDW5 Multi-sensor signal transduction histidine kinase n=12 Tax=Burkholderiaceae RepID=B2UDW5_RALPJ Length = 485 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 67/210 (31%), Positives = 109/210 (51%), Gaps = 17/210 (8%) Query: 352 HFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSI----PEDNATAQSIMADFSQ 407 H Q++ +E+ +ARELHD L +L+ ++ L L+ I P + +MA Q Sbjct: 244 HLQRVT-EDEKTRLARELHDELGAILTATKMDLHWLRSRIHANEPAVSEKITRVMAHVDQ 302 Query: 408 ALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQ 467 + R + +L T L L + S L E + T +N +++L +P L DA Sbjct: 303 GIQIKRRLIEDLRPTILLNLGLVEALSQLTEDVGT-RNGWHTEVSLPDDMPKLTDDAA-- 359 Query: 468 VHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPE-----GH 522 + L +I++E++ NA K+A+A+ ++V+ +G + +RDNG G P + E GH Sbjct: 360 IALYRIVQESLTNASKYAHATTVSVALDVGEEGVR-LRVRDNGRGF--PADIERRRMVGH 416 Query: 523 YGLNIMRERAERLGGTLTF-SQPSGGGTLV 551 +GL M +RA LGGTL S P GG T++ Sbjct: 417 HGLLGMEQRAIALGGTLVIDSMPGGGVTII 446 >UniRef50_UPI0001C31D26 integral membrane sensor signal transduction histidine kinase n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31D26 Length = 394 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 106/225 (47%), Gaps = 15/225 (6%) Query: 335 SVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPED 394 SV ++ R + + + L EER IARELHD LA L+ + +Q + + Sbjct: 162 SVEAIGARAREAERTRAEEARRQLGEERLRIARELHDVLAHSLAMIHVQASTGAHVVARR 221 Query: 395 NATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADL---------PSALR--EMLDTL 443 A+ +++ QA +A LR + R D PS R E++D Sbjct: 222 PEQAEQVLSAIKQASGEALADLRTTVGVLRADAADGDRGEHEPTGPQPSLARVEELIDGA 281 Query: 444 QNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHT 503 + + A++++D L A + V +I++EA+ N ++HA AS + V+ PDG Sbjct: 282 R-RAGAEVSIDVSGERRRLPAPVDVAGYRIVQEALTNVVRHAAASSVRVALAYEPDGV-A 339 Query: 504 VYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGG 548 + I D+G G +GH GL+ MRERA LGG++ GGG Sbjct: 340 LTIDDDGRGAATANG-DGH-GLSGMRERAALLGGSVEAGPRPGGG 382 >UniRef50_C8NJ20 Histidine kinase-related ATPase n=1 Tax=Granulicatella adiacens ATCC 49175 RepID=C8NJ20_9LACT Length = 376 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 57/204 (27%), Positives = 106/204 (51%), Gaps = 8/204 (3%) Query: 354 QQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAY 413 +++ ++ER I+RE+HDS+ LS + IQL + + +N+ Q + + Sbjct: 171 KEIFTLQERNRISREIHDSVGHSLSTIIIQLGAISQLAKMENSPIQEMSEGLREFATQGL 230 Query: 414 RQLRELLTTFR-LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQ 472 +++R+++ + + + L AL E +Q + ++ PT AL+++ ++ + + Sbjct: 231 QEVRKIVHDLKPEQMDRKQLDIALEEFFHEVQVNSGLEIQFRKNDPTFALNSEAELSVFR 290 Query: 473 IIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIG-IGEPKEPEGHYGLNIMRER 531 ++EA+ NAM+H NA++I V + V I+DNG G E P+G GL ++ER Sbjct: 291 GVQEAITNAMRHGNATKITV-LLMYNQAQLVVTIKDNGQGATSEELVPKG--GLKSLQER 347 Query: 532 AERLGGTLTFSQPSGGGTLVSISF 555 R GG + + PS G V+I F Sbjct: 348 LRREGGVVEMN-PSNQG--VTIQF 368 >UniRef50_Q2IIQ9 Periplasmic sensor signal transduction histidine kinase n=3 Tax=Anaeromyxobacter RepID=Q2IIQ9_ANADE Length = 594 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 55/192 (28%), Positives = 101/192 (52%), Gaps = 5/192 (2%) Query: 368 ELHDSLAQVLSYLRIQLTLLKRSIP--EDNATAQSIMADFSQALNDAYRQLRELLTTFR- 424 +LHD L QV++ +++ L L+R+ ED ++ A+ +Q L++A +R + + R Sbjct: 389 DLHDELGQVITSVKVDLAALQRAGADGEDPGARRARFAELAQRLDEAVAFVRRVSSDLRP 448 Query: 425 LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKH 484 L + L +AL ++ L+ +T + LD ++ V L +I+REA+ N ++H Sbjct: 449 PVLDRLGLAAALEGLVRDLEQRTRLAVFLDVDPSVEPVEWLPAVTLFRIVREALTNVVRH 508 Query: 485 ANASEIAVSCVTAPDGNHTVYIRDNGIGIGE-PKEPEGHYGLNIMRERAERLGGTLTFSQ 543 A A+E+A+ P + +RD+G GIG + G++ M+ERA + GT + Sbjct: 509 AGATEVAIELRATP-AALVLTVRDDGKGIGPWAADDRRSLGIHGMQERALLVDGTFEIAG 567 Query: 544 PSGGGTLVSISF 555 GGGT + ++ Sbjct: 568 TPGGGTTIVVTI 579 >UniRef50_C6XAP9 PAS/PAC sensor signal transduction histidine kinase n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6XAP9_METSD Length = 446 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 62/196 (31%), Positives = 100/196 (51%), Gaps = 9/196 (4%) Query: 360 EERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLREL 419 EER IAR+LHD + Q L+ ++ T L ++P+ + + + YR R+L Sbjct: 243 EERRHIARDLHDDMGQYLNAIKANATSLV-NMPDLPPSISEVALHIISHSDHIYRSARQL 301 Query: 420 LTTFR-LTLQQADLPSALREMLDTLQ---NQTSAKLTLDCRLPTLALDAQMQVHLLQIIR 475 + R L + L +AL+ ++DT + N T +L +D L L D ++ +++ ++I+ Sbjct: 302 IHRLRPAALDELGLGAALQHLIDTWKYPANGTRYQLAIDDALDHL--DDKLTINIYRVIQ 359 Query: 476 EAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERL 535 EA+ NA +HA AS I V D V I D+G GI + +P GL MRER + + Sbjct: 360 EAITNAARHAQASLIDVHLFMQGD-RLIVDITDDGCGISQ-AQPHKGLGLAGMRERIKAV 417 Query: 536 GGTLTFSQPSGGGTLV 551 G S +G GT + Sbjct: 418 DGKFEVSSAAGTGTRI 433 >UniRef50_Q1IJ87 Histidine kinase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IJ87_ACIBL Length = 249 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 61/197 (30%), Positives = 98/197 (49%), Gaps = 3/197 (1%) Query: 360 EERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLREL 419 EER+ +ARELHD +Q L+ L IQL L ++P+ AT ++ + D +++ D + L Sbjct: 51 EERSYLARELHDDTSQRLALLAIQLEALAMNLPQKKATLRAALMDMHKSVTDLAADIHAL 110 Query: 420 LTTFRLT-LQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAV 478 + L + +A+R + D ++ Q +T + AL + + L +I EA+ Sbjct: 111 SRQLHPSVLDRLGAVAAIRGLCDQVRAQRGISVTFSGADISDALPRESALCLYRIAEEAI 170 Query: 479 LNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGT 538 NA+KH +A+E+ V ++ + IRDNG G + EG G MRER G+ Sbjct: 171 TNAIKHGSATELVVE-LSQRSNAVVLTIRDNGSGFDLRAQSEG-LGFLSMRERLRLASGS 228 Query: 539 LTFSQPSGGGTLVSISF 555 L SG GT + S Sbjct: 229 LLVRSASGEGTAIEASI 245 >UniRef50_B1ZR83 Integral membrane sensor signal transduction histidine kinase n=2 Tax=Verrucomicrobia RepID=B1ZR83_OPITP Length = 742 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 64/202 (31%), Positives = 101/202 (50%), Gaps = 9/202 (4%) Query: 358 LMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLR 417 ++ ER +AR+LHD+L Q L+ + +QL + D +Q + L+ + LR Sbjct: 521 VLAERTRLARDLHDTLEQTLTGIALQLDTAAKLFGRDGEQSQHHLQLARNWLHQSQVDLR 580 Query: 418 ELLTTFR-LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPT--LALDAQMQVHLLQII 474 + R L+Q DL ALR+ + L + TS LT+D R L ++ ++L+I Sbjct: 581 RSIWDLRSRELEQFDLAKALRQSAEQLVDGTS--LTIDFRTTGDRRPLPEVVEENVLRIG 638 Query: 475 REAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEP---EGHYGLNIMRER 531 +EA N KHA A + + +P + I D+G+G P P E H+GL M ER Sbjct: 639 QEAFTNIAKHARARRVLATLTFSPS-TLRLRIEDDGVGFNVPAAPSAAESHFGLLGMTER 697 Query: 532 AERLGGTLTFSQPSGGGTLVSI 553 A+RLGG + G GT +++ Sbjct: 698 AKRLGGHIKVDSAPGQGTSLTL 719 >UniRef50_UPI000050FB07 two-component histidine kinase n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050FB07 Length = 410 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 59/214 (27%), Positives = 113/214 (52%), Gaps = 17/214 (7%) Query: 350 QKHFQQLLLMEERATIARELHDSLAQVLSYLR-IQLTLLKRSIPEDNATAQSIMADFSQA 408 Q+H ++ +ER ++R++HD++AQ +S +R I + R+ +A A ++ Sbjct: 177 QRHAGEI---QERTRVSRDIHDTIAQEISSIRLIAHAEVDRTT---DAHAAQVLRQVEDL 230 Query: 409 LNDAYRQLRELLTTFR-LTLQQADLPSALREMLDTLQNQTS--AKLTLDCRLPTLALDAQ 465 + R +R ++ L+ L +A+R +L L++ TS ++ +D +P+L A+ Sbjct: 231 AAQSSRDVRRIIAALAPAELEDGALTAAIRRLLTRLEDDTSIRGRVEVDETVPSLP--AE 288 Query: 466 MQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEP----KEPEG 521 ++V LL+ + A+ N +H++AS + VS + DG+ + I D+G+G+ EP +E E Sbjct: 289 VEVALLRTAQSALANVRQHSHASRVMVSLMDL-DGSIRMDIVDDGVGMSEPEARKRESES 347 Query: 522 HYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 +GL+ + R LGG L G G +S + Sbjct: 348 GFGLDFIGSRMRELGGELVIETTPGSGFAISATL 381 >UniRef50_D2B559 Histidine kinase n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2B559_STRRD Length = 362 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 68/217 (31%), Positives = 112/217 (51%), Gaps = 7/217 (3%) Query: 343 GLYFNQAQKHFQQ---LLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQ 399 GL+ +H +Q + +EERA +ARE+HD+LAQ S + QL ++ I +D T + Sbjct: 146 GLFARDLIRHSEQNRVVGTLEERARLAREIHDTLAQGFSGIIAQLEAAQQGI-DDPDTVR 204 Query: 400 SIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLP 458 ++ Q D+ + R + R L++A+L AL + + T +T+ Sbjct: 205 KRISLAKQLARDSLNEARRSVDALRPEPLERAELHEALAAVAERWSAATGVLVTVSVDGE 264 Query: 459 TLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKE 518 L ++M+ +L+ +EA+ N +HA A A++ ++ D T+ + D+G G +P Sbjct: 265 LRRLPSEMETTVLRAAQEALANVARHARAGRAALT-LSYMDEEVTLDVLDDGTGF-DPAA 322 Query: 519 PEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 G YGL MRERA R GGT+T GGGT + +S Sbjct: 323 TGGGYGLIAMRERASRSGGTVTVESAPGGGTALCVSI 359 >UniRef50_B4WTU0 PAS fold family n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WTU0_9SYNE Length = 388 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 64/224 (28%), Positives = 114/224 (50%), Gaps = 19/224 (8%) Query: 350 QKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIM---ADFS 406 +K + L ++EER+ +AR++HDSLAQ + + + + + +R + D TAQ+ + A+ + Sbjct: 167 RKRLEALSVLEERSRLARDVHDSLAQAFTSILVHIEVAERKLLSDPTTAQACLQTSAEVA 226 Query: 407 QA-LNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQ 465 QA L DA R ++ L L Q +L AL ++ + +S ++ + + L + Sbjct: 227 QAGLVDARRTIKALRPYH---LDQTNLYDALCQIAHQIFAYSSTQVRSNQSGASYVLLPE 283 Query: 466 MQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEG---- 521 ++ LL+I +EA+ NA KHA A+ I ++ P+ + I+DNGIG Sbjct: 284 VENALLRIGQEALTNAFKHAQATVIYLNLSYQPN-QCVLRIQDNGIGFATDAAERANGTS 342 Query: 522 -------HYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSA 558 HYGL M ER++ + LT GT +++S + + Sbjct: 343 DQHSSVQHYGLTGMAERSQHIDAELTVESILNQGTAITVSVQKS 386 >UniRef50_B8D0J3 Histidine kinase n=2 Tax=Clostridia RepID=B8D0J3_HALOH Length = 391 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 52/197 (26%), Positives = 97/197 (49%), Gaps = 2/197 (1%) Query: 360 EERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLREL 419 +ER +ARE+HD AQ ++ L ++ L ++ + +D A++ + D + + + +++R++ Sbjct: 179 DERKRVAREIHDGPAQSIANLVFRVELAQKLMDKDLKKARNELEDVKELVRLSMQEVRKI 238 Query: 420 LTTFR-LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAV 478 + R ++L L LR ++ QT + + P L ++ + ++I+E + Sbjct: 239 IYDLRPMSLDDLGLIPTLRRYINKFNEQTKIIIDFNILGPKRRLPNTYEITIFRLIQEGL 298 Query: 479 LNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGT 538 N KH+ AS V+ P+ + I D+GIG + +GL MRER E LGG Sbjct: 299 NNIYKHSKASTGTVTLEYTPE-QINILISDDGIGFKPEEVGANKFGLVSMRERCELLGGK 357 Query: 539 LTFSQPSGGGTLVSISF 555 L GT + I+ Sbjct: 358 LDLFSEKNKGTKIKITL 374 >UniRef50_A5GBV0 Integral membrane sensor signal transduction histidine kinase n=3 Tax=Geobacter RepID=A5GBV0_GEOUR Length = 660 Score = 79.0 bits (193), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 57/199 (28%), Positives = 94/199 (47%), Gaps = 8/199 (4%) Query: 360 EERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFS----QALNDAYRQ 415 +ER I+ +LHD L Q L+ R+ ++L+R + E Q M S +++N AY Sbjct: 451 DERRRISHDLHDGLCQQLTGARLHFSVLERKL-EGAGRQQPEMTQLSSLLEESVNHAYDL 509 Query: 416 LRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIR 475 R L + + + +L E+ L + + + L +I + Sbjct: 510 SRGL---WPVEHDPHGVSPSLEELTRRLAESSGIAIKFSQERGCVHCSNAGLTQLFRIAQ 566 Query: 476 EAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERL 535 EA+ NA+KHA AS I V+ + ++ + DNG+G +G G+ IM RA+ + Sbjct: 567 EAITNAVKHARASRIDVALNCQDRNSVSLAVHDNGVGRSAASGTKGGMGMGIMSHRAKII 626 Query: 536 GGTLTFSQPSGGGTLVSIS 554 GG L+ S GGGTLV+ + Sbjct: 627 GGMLSVSDAEGGGTLVTCT 645 >UniRef50_C6CVS1 Histidine kinase n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CVS1_PAESJ Length = 338 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 56/198 (28%), Positives = 100/198 (50%), Gaps = 5/198 (2%) Query: 358 LMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLR 417 ++EER +ARELHD+++Q L + + T + R+I D A+ + + + A ++R Sbjct: 133 VIEERQRLARELHDAVSQQLFAISMTATAVSRTIERDWERAKRQVQLIEEMASVAQSEMR 192 Query: 418 ELLTTFR-LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIRE 476 LL R + L +L +AL ++D L+ + + LD ++ + + + HL +I +E Sbjct: 193 ALLLHLRPVHLDGKNLAAALTALVDELKQKVPMTIDLDVD-DSITMKPETEDHLFRIAQE 251 Query: 477 AVLNAMKHANASEIAVSC-VTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERL 535 A+ N ++H+ A + + P+ + ++D GIG + + YGL M ER L Sbjct: 252 ALSNTLRHSKAESMEIKLHRKGPEVR--MLLKDTGIGFDLEAKKQTSYGLLTMEERVNEL 309 Query: 536 GGTLTFSQPSGGGTLVSI 553 GG L G GT + I Sbjct: 310 GGYLHMISKPGEGTSIDI 327 >UniRef50_C0ZEI3 Two-component sensor histidine kinase n=2 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZEI3_BREBN Length = 411 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 63/223 (28%), Positives = 107/223 (47%), Gaps = 3/223 (1%) Query: 344 LYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMA 403 L +A H Q+ ++EER IAR++HD+L L+ L +QL LK + + AQ + Sbjct: 190 LQLQEAALHSLQVAVLEERTRIARDIHDALGHSLTSLIVQLHALKYMLQDGPDNAQEAVR 249 Query: 404 DFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALD 463 + + +R + T L L + LR +L Q T K+ L C + L Sbjct: 250 NMLGVAKQSLEDIRTSVHTLALDKTSLGL-TPLRALLSQAQKHTGIKMELICSDLDIPLS 308 Query: 464 AQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHY 523 +M + +I++EA+ N+++H++A EI V + + + IRD+G + K G + Sbjct: 309 QEMTITFYRILQEAITNSLRHSDAKEILV-IIEQKNDILLLSIRDDGSITSDQKIKPG-F 366 Query: 524 GLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEESQLM 566 GL + ER + L GTL + G + SF + E+ + M Sbjct: 367 GLTGIFERIQLLNGTLAYRIREPHGFQLDFSFPIHQTEQERSM 409 >UniRef50_C4RH58 Two-component system sensor kinase n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RH58_9ACTO Length = 405 Score = 78.6 bits (192), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 63/194 (32%), Positives = 100/194 (51%), Gaps = 14/194 (7%) Query: 361 ERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELL 420 ER I R+LHD Q L L I L + + + ++ AQ+++ ++ A +LREL+ Sbjct: 215 ERRRIERDLHDGAQQRLLRLAITLGMARLEVRDNPEAAQALVDQAAEQAKAALAELRELV 274 Query: 421 TTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVL 479 L + LP+AL E+ D+ + L + RLP++ ++ ++ EA+ Sbjct: 275 RGVHPQILTERGLPAALTELADSAAVPLTIALDVPHRLPSM-----VESTAYFVVAEALT 329 Query: 480 NAMKHANASEIAVS-CVTAPDGNHTVY-IRDNGIGIGEPKEPEGHYGLNIMRERAERLGG 537 NA+KHA A +I V+ C+ DG V +RDNG+G +P G GL +R + L G Sbjct: 330 NAVKHAKARQIWVTGCL---DGTALVVEVRDNGVGGADPDSGTGLAGLA---DRVDALAG 383 Query: 538 TLTFSQPSGGGTLV 551 TL S P GG T++ Sbjct: 384 TLVLSSPPGGPTVL 397 >UniRef50_A9BNQ5 Histidine kinase n=1 Tax=Delftia acidovorans SPH-1 RepID=A9BNQ5_DELAS Length = 470 Score = 78.6 bits (192), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 66/207 (31%), Positives = 97/207 (46%), Gaps = 9/207 (4%) Query: 360 EERATIARELHDSLAQVLSYLRIQLTL----LKRSIPEDNATAQSIMADFSQALNDAYRQ 415 EER +AR+LHD + QVL + L L+R +D ATAQ ++ + LN A + Sbjct: 248 EERTRVARDLHDGVVQVLVSSKFLLETAQAQLRRLAAQDPATAQRMVDQGLEQLNHALVE 307 Query: 416 LRELLTTFRLTL-QQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQII 474 +R + R L L AL M +Q + ++ CR T L L ++ Sbjct: 308 IRRVSHGLRPALLDDLGLAPALALMSQQMQAEDGLRMQFGCRGETRFLPPSHATALFRVA 367 Query: 475 REAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGE---PKEPEGHYGLNIMRER 531 +EAV NA HA A+ I VS + + + D+G G ++ +G GL MRER Sbjct: 368 QEAVTNAQNHAQATRIDVS-LHFQRRRVVLQVSDDGQGFDMRRVQRDRQGGIGLRNMRER 426 Query: 532 AERLGGTLTFSQPSGGGTLVSISFRSA 558 E LGG L+ S G LV++ +R Sbjct: 427 IEGLGGHLSISSGRRGTRLVAVLYRDG 453 >UniRef50_A9B363 Integral membrane sensor signal transduction histidine kinase n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B363_HERA2 Length = 517 Score = 78.6 bits (192), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 88/338 (26%), Positives = 155/338 (45%), Gaps = 31/338 (9%) Query: 233 VEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRD-----NEAAEYLELNV 287 VE+ ++L + + L+ L + AL++ +V R + Q+ N A + L Sbjct: 185 VEQLAQELAQERDYLQQLSAITAALSS---EVQLARVLAQVAEAGRSLANAQAVTVALLE 241 Query: 288 GENWRI--SEGQPNPELP-MQILPVTMQETVYGELHWQNSHVSSS-----EPLLNSVSSM 339 WRI S G P+ LP ++I+ ET+ +W +++ +P ++ + Sbjct: 242 DPEWRIVASVGSPDTNLPSLEIMLHAKGETIGRLNYWSIQPTNAALRQALQPFADAAAMA 301 Query: 340 LGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQ 399 + + QA+ F L ER +AR+ HD+LAQ L+ LR+Q+ R++ + Sbjct: 302 IYNAQLYEQAR--FSATL--AERNRLARDFHDTLAQQLTGLRLQIEAGMRNLHQPEKAQL 357 Query: 400 SIMADFSQALNDAYRQLRELLTTFRLTLQQAD---LPSALREMLDTLQNQTSAKLTLDCR 456 + + AL A LR + + L+ D L L E++DT +T+ + Sbjct: 358 RLQKAYDLALA-ALHDLRR--SVWNLSAPAIDGRVLSDVLAELVDTFHQRTNIQSQYSHD 414 Query: 457 LPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGI--- 513 L L + + + +L+++ EA+ N KHA A +A+ A G + + D+G G Sbjct: 415 GQELTLPSDVAIQVLRVVNEALSNVEKHAQAKHVAIRSTVAA-GQLQITVSDDGQGFELA 473 Query: 514 GEPKEPEGHYGLNIMRERAERLGGTLTF-SQPSGGGTL 550 + G +GL MRER + + G+L+ SQPS G L Sbjct: 474 AVQQTASGGFGLTSMRERTQLIQGSLSIQSQPSAGTLL 511 >UniRef50_C4ZFM0 Histidine kinase n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4ZFM0_EUBR3 Length = 347 Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 58/211 (27%), Positives = 101/211 (47%), Gaps = 11/211 (5%) Query: 353 FQQLLLM---EERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQAL 409 F++++L ER IAR+LHDS Q L+ L + L + + D + + + L Sbjct: 130 FKRVILQTVESERQRIARDLHDSTVQSLTSLTHKTELCLKLMDVDPIRCRLELTSQGKIL 189 Query: 410 NDAYRQLRELLTTFR-LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQV 468 D +LR ++ R ++ + LD L+N + + +D+ + + Sbjct: 190 KDIINELRNMIYNLRPMSFDDIGFNITVERALDKLRNSNNIRCNFKTSGDEYMVDSLVSL 249 Query: 469 HLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPE------GH 522 LL++I+EA N++KH +A EI VS P + T+ I+D+G G PE Sbjct: 250 TLLRVIQEACSNSIKHGHAKEINVSLKYEP-KSLTLTIKDDGDGFDTSAIPEFTREDNSG 308 Query: 523 YGLNIMRERAERLGGTLTFSQPSGGGTLVSI 553 +GL++M+ER L G ++ S G G +V + Sbjct: 309 FGLSMMKERIYLLSGKISISSKPGEGCIVRV 339 >UniRef50_Q2IVJ5 Putative signal transduction histidine kinase n=1 Tax=Rhodopseudomonas palustris HaA2 RepID=Q2IVJ5_RHOP2 Length = 801 Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 104/204 (50%), Gaps = 19/204 (9%) Query: 359 MEERATIARELHDSLAQVLSYLRIQLTLLKRSIPE----DNATAQSIMADFSQALNDAYR 414 +EER+ I+ +LHD+++Q L L+ ++PE D A++++ D ++ A Sbjct: 601 LEERSRISSDLHDAVSQTL----FSAVLIAETLPEQWKRDRTKAEALLTDLARLNRSALD 656 Query: 415 QLRELLTTFR-LTLQQADLPSALREMLDTLQNQTSAKLTL----DCRLPTLALDAQMQVH 469 ++R+LL+ R L L + LR ++ + + + ++L D RL D +Q+ Sbjct: 657 EMRDLLSRVRSRDLIDPVLGTLLRGLVARFEERHALGISLTVGSDARL-----DEDVQIA 711 Query: 470 LLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMR 529 +I +E + N MKHA++S + + A +G + I D+G G EG GL IM Sbjct: 712 FFRIAQEGLNNVMKHASSSTVRL-FYEALEGQAILTIEDDGNGFDTAHLREGSMGLQIMA 770 Query: 530 ERAERLGGTLTFSQPSGGGTLVSI 553 ERA ++G L + G GT +++ Sbjct: 771 ERARKIGAVLETTSSPGHGTQITL 794 Score = 41.6 bits (96), Expect = 0.092, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 14/130 (10%) Query: 164 LVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELH 223 LVF L R +V PL+ L+ R G S L + P+E+G L ++FN+M+ + + Sbjct: 518 LVFQAL--FRTNLVRPLDALLAGVGRFREGTL-SRRLPIHFPDEIGYLTRSFNEMAEKQN 574 Query: 224 KLYRSLEASVEEKTRD---LHEAKRRLEVLYQCSQALNTSQIDVHCFRHIL-------QI 273 L LE V E+T + L + RLE + S L+ + + F +L Q Sbjct: 575 DLLNGLEDRVTERTAEVTILADRNARLEERSRISSDLHDA-VSQTLFSAVLIAETLPEQW 633 Query: 274 VRDNEAAEYL 283 RD AE L Sbjct: 634 KRDRTKAEAL 643 >UniRef50_C1XFL0 Signal transduction histidine kinase, COG4585 n=1 Tax=Meiothermus ruber DSM 1279 RepID=C1XFL0_MEIRU Length = 386 Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 70/210 (33%), Positives = 102/210 (48%), Gaps = 14/210 (6%) Query: 354 QQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAY 413 Q+L + ER IAR+LHD L LS + ++ L R D A A M + + +A Sbjct: 175 QRLAAIAERERIARDLHDLLGHTLSVITLKAELAARLAGRDPARAAQEMREVERISREAT 234 Query: 414 RQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQI 473 Q+RE + +R Q +L A R L T A + DC + L L + L Sbjct: 235 AQVREAVQGYRSRGLQGELAGA-RLALQT------AGIRFDCYIQPLTLSPTQESVLGLA 287 Query: 474 IREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAE 533 +REAV N ++H+ A+ AV + A G + + D+G G G +E G G MR+RAE Sbjct: 288 LREAVTNVIRHSGATCCAVRLLKA-GGGVLLEVEDDGKG-GVLEEGSGLQG---MRQRAE 342 Query: 534 RLGGTLTFSQPSGGGTLVSISFRSAEGEES 563 LGG L S S GGT + + +A+ E + Sbjct: 343 ALGGRLERS--SNGGTKLRLWLPTADPERT 370 >UniRef50_B4RWI3 Sensor histidine kinase n=2 Tax=Alteromonas macleodii RepID=B4RWI3_ALTMD Length = 447 Score = 78.2 bits (191), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 59/205 (28%), Positives = 107/205 (52%), Gaps = 13/205 (6%) Query: 356 LLLMEERATIARELHDSLAQVLSYLRIQLTLL----KRSIPEDNATAQSIMADFSQALND 411 LL +ER +ARELHD++ Q+L+ ++ +L +RS+ E +A +M S ++D Sbjct: 237 LLQEQERNYLARELHDNVGQLLTTIKAHAYILVNTKERSVVELSAQKVQVM---SHQISD 293 Query: 412 AYRQLRELLTTFRLTLQQADLPSALREML-DTLQNQTSAKLTLDCRLPTLALDAQMQVHL 470 A R+L L L L + L ++L ++ + Q + + L D + +HL Sbjct: 294 AIRKLTAHLHP--LVLDRVSLQASLERLVYEQEVAQPGTQWDVSINLKRYQEDTERDIHL 351 Query: 471 LQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRE 530 + ++EA+ N +KHA A+++++ + + TV ++DNG G+G + G++ MR Sbjct: 352 YRFVQEAINNVIKHAKATKVSIQ-IFGDTHSVTVTVKDNGRGLG--NHIVENIGMSSMRS 408 Query: 531 RAERLGGTLTFSQPSGGGTLVSISF 555 RA +G + + P GG VS+S Sbjct: 409 RARCIGANCSVASPDEGGVAVSLSL 433 >UniRef50_A6TSW3 Histidine kinase n=2 Tax=Alkaliphilus RepID=A6TSW3_ALKMQ Length = 392 Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 58/210 (27%), Positives = 105/210 (50%), Gaps = 11/210 (5%) Query: 360 EERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLREL 419 EER +ARE+HD AQ L+ + I+ + ++ + D ++ + + + L D + +R++ Sbjct: 184 EERHRVAREIHDGPAQSLANVVIKAEICEKLMDIDLEKSREEIQNLKKILRDGIKDIRKI 243 Query: 420 LTTFR-LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAV 478 + R ++L L L+ ++T + +T + L+ D+ + + +II+EA+ Sbjct: 244 IYNLRPMSLDDIGLIPTLKRYVETFEEETQINMILNILSEDPIKDSIKNLSIFRIIQEAL 303 Query: 479 LNAMKHANASEIAVSC-VTAPDGNHTVYIRDNGIG-----IGEPKEPEGHYGLNIMRERA 532 N KHA A+ I + +T D ++++DNGIG I P+ EG +GL M+ER Sbjct: 304 NNVRKHARATNINIKIEITQTD--IRLHVQDNGIGFDTENIKVPQNYEGGFGLLNMKERV 361 Query: 533 ERLGGTLTFSQPSGGGT--LVSISFRSAEG 560 L G + GT ++ IS EG Sbjct: 362 GLLDGKINIKSKINQGTKLMIYISNEVEEG 391 >UniRef50_B1HRK4 Sensor protein n=2 Tax=Bacillaceae RepID=B1HRK4_LYSSC Length = 346 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 61/199 (30%), Positives = 100/199 (50%), Gaps = 9/199 (4%) Query: 358 LMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLR 417 ++ ER +ARELHDS++Q L + L+ L S ++NAT+ + + + A ++R Sbjct: 139 IVAERQRLARELHDSVSQQLFAASMLLSALTES--DENATS---LKQVEKIVQQAQLEMR 193 Query: 418 ELLTTFR-LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIRE 476 LL R + L+ L L E++ LQ + ++ L +AL + HL +I +E Sbjct: 194 ALLLHLRPVALRNKTLAQGLEELIIELQQKVY--FHIEYELEEMALTKAEEDHLFRIAQE 251 Query: 477 AVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLG 536 A+ N ++HA ASE+ + V A D + I+DNG+G + YGL + ERA +G Sbjct: 252 ALSNTLRHAKASEVELLLV-ARDDLAILRIQDNGLGFDVEADKSTSYGLQNIAERAVEIG 310 Query: 537 GTLTFSQPSGGGTLVSISF 555 T GT+V + Sbjct: 311 CTYKIVSVPEEGTIVEVKI 329 >UniRef50_D2PW73 Histidine kinase n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PW73_9ACTO Length = 430 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 62/204 (30%), Positives = 96/204 (47%), Gaps = 13/204 (6%) Query: 358 LMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPE----DNATAQSIMADFSQALNDAY 413 +M ER +ARE+HD+LAQ ++ + + L + + E A+A + +A + Sbjct: 223 VMAERERMAREIHDTLAQGMTSI---VMLAQTAAVELQRGGTASAATRLAAIEDTARENL 279 Query: 414 RQLRELLTTFR-LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLP---TLALDAQMQVH 469 + R L+ F + L +A L LR + +T + + +P AL QV Sbjct: 280 AEARALVAAFTPVALAEAPLADVLRRQAERFAAETGVDVQVALDMPDEEVAALPQGQQVV 339 Query: 470 LLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMR 529 LL+ +EA+ N KHA A+ + ++ APDG + I D+G G P YGL MR Sbjct: 340 LLRAAQEALANVRKHAGATSVLITLTMAPDGVR-IEISDDGSGF-VTAAPVTGYGLAAMR 397 Query: 530 ERAERLGGTLTFSQPSGGGTLVSI 553 R E GGT+ G GT V + Sbjct: 398 GRVEESGGTVQVDSAPGRGTRVQV 421 >UniRef50_Q47G83 PAS n=1 Tax=Dechloromonas aromatica RCB RepID=Q47G83_DECAR Length = 683 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/197 (26%), Positives = 93/197 (47%), Gaps = 2/197 (1%) Query: 360 EERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLREL 419 +ER I+RELHD L Q L+ LR++++ L + + + + ++ + +R + Sbjct: 480 QERLRISRELHDELGQALTGLRMEISWLGGRLLTTQPELEQKVVSIKKLIDGTIKSVRRI 539 Query: 420 LTTFR-LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAV 478 + R L L +A +D +T+ K+TL+ + L ++++E++ Sbjct: 540 SSELRPLVLDDLGFAAAANWYVDQFATRTNLKVTLELPNDDPENGGTVATTLFRVLQESL 599 Query: 479 LNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGT 538 N +HA A + + + A D + IRD+G G + G GL MRER + LGG+ Sbjct: 600 TNVARHAGARNVDIRLLQAND-QWRLEIRDDGQGFDQSSAKMGGIGLIGMRERVQALGGS 658 Query: 539 LTFSQPSGGGTLVSISF 555 + G GTL+ I Sbjct: 659 FELTAAPGQGTLIEICI 675 >UniRef50_C1YIX9 Signal transduction histidine kinase, COG4585 n=1 Tax=Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 RepID=C1YIX9_NOCDA Length = 412 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/204 (29%), Positives = 103/204 (50%), Gaps = 17/204 (8%) Query: 358 LMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNAT---AQSIMADFSQALNDAYR 414 +++ER +ARE+HD+LAQ L+ + Q+ +R + A A + ++L +A R Sbjct: 210 VLDERQRMAREIHDTLAQGLAGIVTQIQAAQRVWEDPGAARPHADRALGLARESLAEARR 269 Query: 415 QLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQII 474 ++ L L ++ LP AL E+ + + LD +AL ++V L ++ Sbjct: 270 SVQALRPG---QLAESQLPEALGELTRRWAEEHGVRPDLDVTGERVALSPAIEVVLFRVA 326 Query: 475 REAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGH----YGLNIMRE 530 +EA+ N +HA+AS + V+ ++ D + +RD+G GI GH +GL+ MR+ Sbjct: 327 QEALTNVARHADASRVGVT-LSYSDDVVLLDVRDDGRGI------TGHNQHGFGLSSMRQ 379 Query: 531 RAERLGGTLTFSQPSGGGTLVSIS 554 R +GG L G GT VS + Sbjct: 380 RVRGIGGALEIESGEGEGTAVSAT 403 >UniRef50_B9XAQ4 Multi-sensor signal transduction histidine kinase n=1 Tax=bacterium Ellin514 RepID=B9XAQ4_9BACT Length = 474 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/205 (28%), Positives = 98/205 (47%), Gaps = 7/205 (3%) Query: 350 QKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQAL 409 +K Q+ +E+R I ++LHD + Q L+ + + +L + + + ++ + + + Sbjct: 258 EKEVLQISELEQR-RIGQDLHDGICQHLAGIEMLSEVLGQKLTKKGKDLETQAENIAAQI 316 Query: 410 NDAYRQLRELLTTFR-LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQV 468 + Q R L + L+ L +AL E+ + S K +C P D Sbjct: 317 RNVIAQTRSLARGLSPVVLESEGLMAALSELAVNTEKLFSIKCRFECLAPVYVHDLITAT 376 Query: 469 HLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNI- 527 HL +I +EAV NA+KH A+EI + + D + +RDNGIGI P P G+ + Sbjct: 377 HLFRIAQEAVANAIKHGKAAEIEIGLESKLD-KTILAVRDNGIGI--PPTPGASRGMGLR 433 Query: 528 -MRERAERLGGTLTFSQPSGGGTLV 551 M RA +G TL F + + GGT V Sbjct: 434 TMHYRAGMIGATLLFQRQNKGGTAV 458 >UniRef50_C7TK00 Two component sensor transduction histidine kinase n=9 Tax=Lactobacillus RepID=C7TK00_LACRL Length = 354 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 64/205 (31%), Positives = 109/205 (53%), Gaps = 15/205 (7%) Query: 357 LLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSI---MADFSQALNDAY 413 +L ER +ARELHDS++Q L + L+ L RS+ + +++ + + +N+A Sbjct: 146 ILTGERHRLARELHDSVSQQLFAAMMMLSAL-RSVAARDPKQEALNKQLDTIQKVINEAQ 204 Query: 414 RQLRELLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQ 472 ++R LL R T L+ L + ++L LQ + + K+T +L + L+A + +L + Sbjct: 205 AEMRALLLHLRPTNLEGKSLKQGIIQLLKELQTKITIKIT--WQLDDIQLNAAAEDNLFR 262 Query: 473 IIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIR--DNGIGIGEPKEPE--GHYGLNIM 528 I++E + N ++HA A + V D V +R D+G+G +PKE G+YGL + Sbjct: 263 IVQELLSNTLRHAKADSLEVYLKRLQD---MVILRMVDDGVGF-DPKETSSNGNYGLANI 318 Query: 529 RERAERLGGTLTFSQPSGGGTLVSI 553 +ERA +GGT G GT V + Sbjct: 319 KERAAAMGGTAKVVSVVGQGTSVEV 343 >UniRef50_P96685 Sensor histidine kinase ydfH n=4 Tax=Bacillus subtilis group RepID=YDFH_BACSU Length = 407 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 63/220 (28%), Positives = 96/220 (43%), Gaps = 25/220 (11%) Query: 349 AQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLL------------KRSIPEDNA 396 A + +QL L ER +AR+LHD+LAQ L L +QL + K I + Sbjct: 189 AHQQVEQLTLQNERQRMARDLHDTLAQGLVSLNMQLDAIHVHLAKGNTERAKEIIQQSMK 248 Query: 397 TAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCR 456 +S +AD A++D + E+ L + ++D T LD R Sbjct: 249 RVKSTIADARSAIDDLRSKSEEI----------GVLKERITSLMDHFIESTGMACLLDYR 298 Query: 457 LPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIG--IG 514 L + LD + + II E + NA KHA A I +S G + ++DNG G + Sbjct: 299 LHQV-LDVRTAENCYYIIGECMTNAAKHAEAKTIWISIWDDEKGRLHLTVKDNGKGFDVE 357 Query: 515 EPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSIS 554 + K+ GHYGL ++ER + G GT + I+ Sbjct: 358 KGKKKRGHYGLLGIQERVRAINGQFNIKSTKLKGTQIEIT 397 >UniRef50_B2AKD3 Putative multi-sensor signal transduction histidine kinase n=1 Tax=Cupriavidus taiwanensis RepID=B2AKD3_CUPTR Length = 608 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/201 (28%), Positives = 91/201 (45%), Gaps = 3/201 (1%) Query: 354 QQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAY 413 Q+ + EER IA E+HD L Q+L+ L++ L+LL +P + Q + + + Sbjct: 398 QEAIREEERKCIAMEIHDELGQLLTALKMDLSLLSMQLPTGSGVIQK-AEEMRELIEQTI 456 Query: 414 RQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQI 473 R +R +++ R T L SAL + T P L + +I Sbjct: 457 RIVRNVVSHLRPTALNYGLASALEWLAADFSRHTKIPCRFQSTHPEPNLPDPRATAIFRI 516 Query: 474 IREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGH-YGLNIMRERA 532 ++E++ N +HA AS++ V+ D V IRDNG G G+ YGL+ M ERA Sbjct: 517 VQESLTNVARHAKASQVDVTLANT-DAGIEVIIRDNGQGFNVVSARAGYSYGLHGMAERA 575 Query: 533 ERLGGTLTFSQPSGGGTLVSI 553 +G L GTL+ + Sbjct: 576 RLIGAQLEVHSKPDRGTLIRL 596 >UniRef50_Q9LCW6 Sensor kinase n=5 Tax=Pseudomonas aeruginosa RepID=Q9LCW6_PSEAE Length = 272 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/189 (31%), Positives = 92/189 (48%), Gaps = 7/189 (3%) Query: 360 EERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLREL 419 ER +A+ +HD + Q L+ +R QL LL R D A + + + Q L+D++R L Sbjct: 77 RERRLLAQAVHDDIGQYLTGIRTQLLLL-RCTAGDGQPALARLERYCQGLDDSFRALLRG 135 Query: 420 LTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVL 479 L LQ+ L ALR + Q L P LDA HL ++++EA+ Sbjct: 136 LPPP--ALQRQSLDEALRACVADWQEGQGIACELRLGGPLPPLDAAAGTHLYRLLQEALN 193 Query: 480 NAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTL 539 N +HA AS + + + G + +RD+G G +P +GL+ MR+RA LG L Sbjct: 194 NVARHAGASRVRIR-LQCRGGFLYLSVRDDGRGCA--ADPAPGFGLDSMRQRARCLGAEL 250 Query: 540 TF-SQPSGG 547 + S+P G Sbjct: 251 SLRSRPGQG 259 >UniRef50_Q024A3 Histidine kinase n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q024A3_SOLUE Length = 975 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 62/214 (28%), Positives = 95/214 (44%), Gaps = 6/214 (2%) Query: 344 LYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMA 403 L F + Q + L + ER IARE+HD++ Q + + S D + Sbjct: 757 LLFQERQARERYNLRLAERTRIAREMHDTVVQGCVGVSTLIEAAVSSARSDQDLMLECLD 816 Query: 404 DFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALD 463 + L + R+ LT R + LP AL E+ + + + L P + L Sbjct: 817 NARIHLRMTLDEARQALTDLRHDSFEHGLPGALAELARAVSCEKGIPVMLQVGGPEVRLA 876 Query: 464 AQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPK----EP 519 LL + REA+ NA+ H + I V + P G H + IRD+G G +P Sbjct: 877 ESTNRTLLLVTREAIRNAVLHGAPTAIEVRLLFGPAGVH-IEIRDDGCGF-DPTPSYFAA 934 Query: 520 EGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSI 553 GH+G+ MRER E++ G+L S G GT V++ Sbjct: 935 GGHFGILGMRERMEQICGSLEISSRPGFGTTVTV 968 >UniRef50_A2SKA8 Methanol utilization control sensor protein MoxY, putative n=2 Tax=Burkholderiales RepID=A2SKA8_METPP Length = 475 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 68/213 (31%), Positives = 107/213 (50%), Gaps = 14/213 (6%) Query: 358 LMEERATIARELHDSLAQVLSYLR-IQLTLLKRSIPED--NATAQSIMADFSQALNDAYR 414 L +ER IARELHD L Q ++ +R + L++ +R D A A ++AD S L DA Sbjct: 264 LEQERRLIARELHDELGQSVTGMRSLALSVAQRVAIADPEAARAAQVIADESSRLYDAMH 323 Query: 415 QLRELLTTFRLTLQQADLPSALREMLD-TLQNQTSAKLTLDCRLPTLALDAQMQVHLLQI 473 L L L L L ALR++++ T +Q A + L L + L ++ + L + Sbjct: 324 GLIPRLAP--LVLDVFGLADALRDLVERTRVSQPQASVELHIDLGDVQLGSEATLALYRA 381 Query: 474 IREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIG-----EPKEPEGHYGLNIM 528 +E + NA++H A +++VS +G + + D+G G+ + ++ GHYGL + Sbjct: 382 AQEGLTNALRHGQARQLSVSLHAESEGAE-LQVDDDGQGLAPDWREKARQDGGHYGLRWL 440 Query: 529 RERAERLGGTLTFS--QPSGGGTLVSISFRSAE 559 ER E LGG L P G V + F +AE Sbjct: 441 AERVEALGGVLRIDNRSPRGVALRVWLPFTAAE 473 >UniRef50_Q3IGR8 Sensory histidine kinase in two-component regulatory system with UhpA, regulates uhpT expression n=1 Tax=Pseudoalteromonas haloplanktis TAC125 RepID=Q3IGR8_PSEHT Length = 533 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 61/202 (30%), Positives = 95/202 (47%), Gaps = 18/202 (8%) Query: 361 ERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELL 420 ER +++ELHD L Q L+ L+ L++L N QS + N Y + +L+ Sbjct: 340 ERKHLSQELHDELGQNLTALKTDLSILSHM---SNKDTQSFVKSLKTNANTMYDSVYQLM 396 Query: 421 TTFR------LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQII 474 R L L +A L+ +L ++ D ++ AL ++ + +I Sbjct: 397 HYLRPRELDELGLNKAITAGRLKSLL----HKAKINFQADFKIHK-ALSKDHEIAIYRIC 451 Query: 475 REAVLNAMKHANASEIAVSCVTAPDGNH-TVYIRDNGIGIGEPKEPEGHYGLNIMRERAE 533 +EAV N +KH+NAS++ + VT D N T+ I DNG + P G+YGL + ERA Sbjct: 452 QEAVTNCVKHSNASKMHIELVT--DNNFITLTISDNG-SLATPANNSGNYGLAFIEERAM 508 Query: 534 RLGGTLTFSQPSGGGTLVSISF 555 LGGT +G V + F Sbjct: 509 ALGGTFEVCVKNGFTIKVKLPF 530 >UniRef50_B4CY61 Integral membrane sensor signal transduction histidine kinase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CY61_9BACT Length = 344 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 57/205 (27%), Positives = 94/205 (45%), Gaps = 4/205 (1%) Query: 354 QQLLLMEERAT--IARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALND 411 Q+++ + ER I ++LHD L Q + + LK ++ + + A A+ + + Sbjct: 125 QEIIRISEREQRRIGQDLHDGLCQYYAAVGCAAGSLKLNLEKQGSPAAQSAAEIEELILK 184 Query: 412 AYRQLRELLTTFR-LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHL 470 + R L + ++ L AL +++ T+ S C P D HL Sbjct: 185 GVGEARSLARGLSPVENEERGLQFALEDLVHTITKLQSIDCHFICTSPVSVFDNNRANHL 244 Query: 471 LQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRE 530 +I +EA+ NA +H AS + V ++ G + I DNG GI +P GLNIM+ Sbjct: 245 FRIAQEAINNATRHGKASVVGVR-LSCEHGIVQLTIEDNGCGIPQPLPSSRGMGLNIMQY 303 Query: 531 RAERLGGTLTFSQPSGGGTLVSISF 555 RA + G L + GGT+V+ SF Sbjct: 304 RARMIDGQLEVAPRPEGGTIVTCSF 328 >UniRef50_C5D3Y6 Histidine kinase n=1 Tax=Geobacillus sp. WCH70 RepID=C5D3Y6_GEOSW Length = 693 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/236 (25%), Positives = 111/236 (47%), Gaps = 14/236 (5%) Query: 328 SSEPLLNSVSSMLGRGLYFNQAQKHFQQLLL---MEERATIARELHDSLAQVLSYLRIQL 384 SS L + L + +Q K F LL+ EE+ ++ LHD + Q L L +L Sbjct: 446 SSSKSLQQIEKQLKETMKESQDYKQFHLLLINEQEEEKKKLSVFLHDEVLQNLILLFNKL 505 Query: 385 TLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELL-TTFRLTLQQADLPSALREMLDTL 443 LL ++ DN + D ++L ++ ++RE+ + + ++ L +L + Sbjct: 506 ELLSKNKEMDNG----VFEDIKESLRNSIFEIREMCHELYPVIVEDLGLEKSLYSLKRKC 561 Query: 444 QNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHT 503 Q + + +D + A + + + ++I+E V NA+KH+++ ++ VS V + Sbjct: 562 QTNHNVIIEIDYNTNLRVIPASLSIQVFRMIKELVCNAIKHSSSKKVFVS-VVETNNFLN 620 Query: 504 VYIRDNGIGIGEPK-----EPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSIS 554 + ++D+GIG P H GL +++R +L GTL G GT VSI+ Sbjct: 621 IKVKDHGIGFKVPNRLSELSQNNHLGLITIQKRVNQLKGTLDIQSEPGAGTCVSIT 676 >UniRef50_A9WAP8 ATP-binding region ATPase domain protein n=3 Tax=Chloroflexus RepID=A9WAP8_CHLAA Length = 491 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 72/249 (28%), Positives = 114/249 (45%), Gaps = 21/249 (8%) Query: 321 WQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQ-----QLLLM--EERATIARELHDSL 373 W N + N++S L + ++H + Q++ EER IARELHDS Sbjct: 234 WANDEIGQLTDAFNAMSEALAQAERERAEREHLRAQYVTQIITAQEEERKRIARELHDST 293 Query: 374 AQVLSYLRIQLTLL--KRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQAD 431 +Q L+ L + L L + PE + + Q LND + R+L + L Sbjct: 294 SQALTSLLVGLRSLADRHRSPEIAQQVDDLRSIVGQILNDLHALARQLRPSV---LDDLG 350 Query: 432 LPSALREMLDTLQNQTSAKLTLDCRLPTLA---LDAQMQVHLLQIIREAVLNAMKHANAS 488 L +AL+ + + + + L +D LP L LD ++ L +I++E + N ++HA+AS Sbjct: 351 LAAALQRYV--AECRARSGLIIDLALPGLDDFRLDPVVETALYRIVQEGLTNIIRHAHAS 408 Query: 489 EIAVSCVTAPDGNHTVYIRDNGIGIGEPK--EPEGHYGLNIMRERAERLGGTLTFSQPSG 546 +V D + I D+G G +P +GH GLN +RERA L G L G Sbjct: 409 TASVVIERRADRVRAI-IEDDGCGF-DPNALHGDGHLGLNGIRERAALLNGQLIIESSPG 466 Query: 547 GGTLVSISF 555 GT + + Sbjct: 467 SGTTLYVEI 475 >UniRef50_D1CFK9 Histidine kinase n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CFK9_THET1 Length = 347 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/199 (30%), Positives = 99/199 (49%), Gaps = 5/199 (2%) Query: 361 ERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELL 420 ER+ +ARE+HD AQV++ + + +R + + S + +L ++R + Sbjct: 140 ERSRLAREVHDGPAQVMANAIMAIEYCERLLERRPQSLPSELHRIKLSLRQGLEEVRRFI 199 Query: 421 TTFRLT-LQQADLPSALREMLDTLQNQ-TSAKLTLDCRLPTLALDAQMQVHLLQIIREAV 478 R + L + + + LR+ + Q Q + +D + L D Q + L +II+EA+ Sbjct: 200 YDLRPSDLTREGIIATLRKYAEDYQQQGIEVSIDIDEAIDKLTNDEQ-KFALFRIIQEAM 258 Query: 479 LNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIG-EPKEPEG-HYGLNIMRERAERLG 536 N+ KHA+ASE+ + D + + I DNG G E + G HYGL M+ERAE L Sbjct: 259 QNSRKHASASEVRIQGRIVRDESVELLIADNGRGFDPEDRSERGEHYGLRNMKERAEALQ 318 Query: 537 GTLTFSQPSGGGTLVSISF 555 GTL GT++ + F Sbjct: 319 GTLDIKSSIDDGTVIRVVF 337 >UniRef50_A7NHA6 Integral membrane sensor signal transduction histidine kinase n=2 Tax=Roseiflexus RepID=A7NHA6_ROSCS Length = 812 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 76/279 (27%), Positives = 126/279 (45%), Gaps = 20/279 (7%) Query: 300 PELPMQILPVTMQETVYGELHWQNSHVSS-----SEPLLNSVSSMLGRGLYFN-QAQKHF 353 PE P I + + + G L+ HV E L+ +++ML ++ Q Q+ Sbjct: 501 PETPAVICQLASEGELLGTLYVGARHVPEPLDEEDERLIGLLATMLAHAMHIRAQIQRLS 560 Query: 354 QQLLLM-----EERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQA 408 + LM +ER IA+E+HD + VL L LT +++S+ + A A +I++ Sbjct: 561 EVPALMIAAQEQERERIAQEIHDGVLPVLGALPFGLTQIEQSV-QTGAPADTIISICEAY 619 Query: 409 LNDAYRQLRELLTTFR----LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDA 464 A R REL + R + L +++ + N + T+ LD Sbjct: 620 RERAVRTTRELRSILRHLQPPIVGGTHLGLSIQAFTQEICNLYQVQATIHGATVVYPLDE 679 Query: 465 QMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYG 524 H +II++A++NA++HA + VS + A T + DNG G +P++ G Sbjct: 680 FTSRHAYRIIQQAIVNALQHARPDRLDVS-IEAEQHGWTCRVSDNGHGF-DPQQSSQTNG 737 Query: 525 LNI--MRERAERLGGTLTFSQPSGGGTLVSISFRSAEGE 561 I MRERA +G TLT G GT V++ + + E Sbjct: 738 FGIFSMRERARIIGATLTIESQPGQGTTVTLRVKGKKRE 776 >UniRef50_UPI0001746019 hypothetical protein VspiD_01665 n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001746019 Length = 872 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 61/221 (27%), Positives = 107/221 (48%), Gaps = 18/221 (8%) Query: 355 QLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYR 414 +L ++ ER +ARELHD+LAQ ++ + +QL L + + +++ +A + A + Sbjct: 661 RLAVLAERNRMARELHDTLAQGITAVIMQLELAEDA--SARGLVEAVDPHVKRARDLARQ 718 Query: 415 QLRELLTTFRLTLQQA----DLPSALREMLDTLQNQTSAKL-----TLDCRLPTLALDAQ 465 LRE + R QA DLP AL + + + + + C +PT + Sbjct: 719 TLREARRSVRAMRPQALKAQDLPQALGALFKQMTEGSGMQAEVILRGIPCHIPT-----R 773 Query: 466 MQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGL 525 + ++L+I +E + NA++HA AS + AP +++ DNG G +P+ +GL Sbjct: 774 CEENILRIGQEVLTNALRHAGASRFTGRLIFAPTAI-LLHLHDNGRGF-DPQGQHDGFGL 831 Query: 526 NIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEESQLM 566 +RER E +GG L G GT + I + E + + Sbjct: 832 TGIRERVEGMGGRLCLRSRPGQGTSIRIRLGRLKAESGKFV 872 >UniRef50_A6CIM0 Multi-sensor signal transduction histidine kinase n=1 Tax=Bacillus sp. SG-1 RepID=A6CIM0_9BACI Length = 619 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/241 (23%), Positives = 116/241 (48%), Gaps = 15/241 (6%) Query: 321 WQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYL 380 + + V S L N ++ + + F + +K +L+EER IAR++HD +AQ L+ Sbjct: 366 FTDEDVQSIATLSNQLAVTIKTRMLFKEKEKR----ILLEERNRIARDIHDGIAQTLAGA 421 Query: 381 RIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFR-LTLQQADLPSALREM 439 ++L R + +M + L D+ R++RE + R ++ L A+ Sbjct: 422 IMKLESAGRRFNKKPEETLKLMDESVYGLRDSLREVRESIYALRPYPTERVGLSKAVGSK 481 Query: 440 LDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPD 499 ++ ++ + ++ + R + L + ++ L I +E++ N +KHA AS I + ++ Sbjct: 482 IEAVKKEFDLNISFEIRGEEIELSSMVEKVLFDIFQESLQNVIKHAKASSIEI-LLSYQS 540 Query: 500 GNHTVYIRDNGIG-------IGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVS 552 N + I+D+G+G + + P H+G+ + + AE++ +L G GT V+ Sbjct: 541 ENILLRIKDDGVGFSLFQAMLNARERP--HFGILQINDSAEKINASLQIDSKEGEGTEVT 598 Query: 553 I 553 I Sbjct: 599 I 599 >UniRef50_Q74DM4 Sensory box histidine kinase n=1 Tax=Geobacter sulfurreducens RepID=Q74DM4_GEOSL Length = 384 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/203 (25%), Positives = 103/203 (50%), Gaps = 16/203 (7%) Query: 361 ERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELL 420 ER ++ +LHD + Q L++ +I+ L+ + ED T + + L+ + +++R L+ Sbjct: 177 ERRRLSTDLHDLIGQTLAFAKIRAHSLREHVAEDGLTQ---WGELTGLLDQSIQEVRSLI 233 Query: 421 TTFRLT---LQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREA 477 F+++ L + L +AL + + Q+ ++ L +++V L Q++RE Sbjct: 234 --FQISPPILYEVGLEAALEWLGENFQDNHRFRVNFSDDGTLKPLREEIKVTLFQVVREV 291 Query: 478 VLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPK-------EPEGHYGLNIMRE 530 ++NA KHA+ + + + + + +RD+G G K + G +GL +R+ Sbjct: 292 LINAAKHASPDTVQID-IRGLGESVRITVRDDGRGFDVAKAAHKSRDKAGGGFGLFNIRQ 350 Query: 531 RAERLGGTLTFSQPSGGGTLVSI 553 R ERLGG+L G GT+V++ Sbjct: 351 RIERLGGSLAIESSPGAGTMVTV 373 >UniRef50_C1A0J3 Two-component histidine kinase DevS n=1 Tax=Rhodococcus erythropolis PR4 RepID=C1A0J3_RHOE4 Length = 563 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 72/241 (29%), Positives = 113/241 (46%), Gaps = 25/241 (10%) Query: 333 LNSVSSMLGRG---LYFNQAQKHFQQLLLMEERATIARELHDSLAQVL--SYLRIQLTLL 387 L S+S+ +G L Q+ +L ++ +R IAR+LHD + Q + L +Q TL Sbjct: 337 LASMSAFADQGAVALRLADNQRRMAELDILADRDRIARDLHDHVIQRIFAVGLSVQGTLQ 396 Query: 388 KRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQT 447 + PE + + D + D R + +L T D +LR L+ + +T Sbjct: 397 RTRAPEVHQRLSGTIDDLQDIIQDIRRAIFDLHAT-------EDGAPSLRSRLNQVVAET 449 Query: 448 SA----KLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHT 503 SA ++T+ R P +D + ++REA+ N ++HA AS +A+ V + T Sbjct: 450 SADTDLRVTVQVRGPLSVVDPSLGEQAEAVVREALSNVVRHAQASTVAI--VIDVHDSLT 507 Query: 504 VYIRDNGIGIGEPKEPEGHY--GLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGE 561 V I D+GIG+ P G + GL + ERA LGGT GGGT + S +G Sbjct: 508 VTIADDGIGL-----PPGAHRRGLKNLCERAFALGGTFDAQSTDGGGTTLVWSVPLPDGN 562 Query: 562 E 562 E Sbjct: 563 E 563 >UniRef50_A1WDG5 Integral membrane sensor signal transduction histidine kinase n=1 Tax=Acidovorax sp. JS42 RepID=A1WDG5_ACISJ Length = 322 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 67/210 (31%), Positives = 105/210 (50%), Gaps = 18/210 (8%) Query: 360 EERATIARELHDSLAQVLSYLRIQLTLLKRSIP--EDNATAQSIMADFSQALNDAYRQLR 417 EER T+AR LHD +V L + +LK+ P N A ++ + S LNDAY ++R Sbjct: 112 EERRTLARRLHD---EVNPQLLLTRNVLKQLEPLVAGNGRAAELLGNASGMLNDAYAEMR 168 Query: 418 ELLTTFRL-TLQQADLPSALREMLDTLQN-QTSAKLTLDCRLPTL-ALDAQMQVHLLQII 474 +++ R+ + +AL ++ N +TL+ LP A+ + +II Sbjct: 169 DIIKNTRIEVIDSIGFTAALESLVAHYTNISEKPAITLEHDLPKRPAMPEASAISAYKII 228 Query: 475 REAVLNAMKHANASEIAVSC--VTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNI--MRE 530 REA+ NA+KH+ A+++ VS A D + V I D+G+G+ H G+ + MRE Sbjct: 229 REAIFNAIKHSKAAQVRVSIHHNKALD-TYKVEITDDGVGMKATARNGEHAGIGLIDMRE 287 Query: 531 RAERLGGTLTF--SQPSG---GGTLVSISF 555 R LGG L + P+ GT +S SF Sbjct: 288 RVRVLGGALKIQAADPANQKRPGTKLSFSF 317 >UniRef50_D1BWR4 Histidine kinase n=1 Tax=Xylanimonas cellulosilytica DSM 15894 RepID=D1BWR4_XYLCX Length = 413 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 59/198 (29%), Positives = 96/198 (48%), Gaps = 10/198 (5%) Query: 361 ERATIARELHDSLAQ----VLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQL 416 ER +ARE+HD+LAQ V++ +++ + L R D+A A+ +A D + Sbjct: 213 ERERLAREIHDTLAQGFMSVVTQVQVASSALDRG---DDAAARERLAIVEATARDNLAEA 269 Query: 417 RELLTTFR-LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIR 475 R L+ F ++LQ L ALR + + +T + ++ L A +V LL+ + Sbjct: 270 RGLVAAFAPVSLQGGSLADALRRLAERWSAETGLRAVVEAADDVGPLAADEEVVLLRAAQ 329 Query: 476 EAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERL 535 EA+ N +HA AS + +S + + D+G GI P YGL MR+R + Sbjct: 330 EALTNVRRHAGASAVWLSLEGGGGAPVRLEVVDDGGGI--PAATREGYGLRGMRDRVVAV 387 Query: 536 GGTLTFSQPSGGGTLVSI 553 GG L GGT++S+ Sbjct: 388 GGALDVQAGDDGGTVLSV 405 >UniRef50_C8X6Y6 Histidine kinase n=3 Tax=Actinobacteria (class) RepID=C8X6Y6_NAKMY Length = 403 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 65/203 (32%), Positives = 103/203 (50%), Gaps = 16/203 (7%) Query: 360 EERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQA--LNDAYRQLR 417 +ERA +AR++HD+LAQ LS +++ L +R+ P + +A + A L +A +R Sbjct: 199 QERARLARDIHDTLAQGLSSIQMLLQAAERADPTGPSAGHVRLALATTADNLAEARTLVR 258 Query: 418 ELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQM--QVHLLQIIR 475 EL L A L +ALR + T + +T++ ALD M Q LL++ + Sbjct: 259 ELTPA---PLADAGLVAALRRLAQTQWQRPDLAVTIEA---DEALDLPMATQTALLRLAQ 312 Query: 476 EAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIG--IGEPKEPEG---HYGLNIMRE 530 A+ N ++HA A+ + P + +RDNGIG + + P G +GL R Sbjct: 313 GAMANVLQHARATRATIGISRRPAAVR-LTVRDNGIGFDVDHWQPPAGGPDSFGLAAART 371 Query: 531 RAERLGGTLTFSQPSGGGTLVSI 553 R E+LGGTL + G GT V++ Sbjct: 372 RVEQLGGTLELTTAPGRGTTVTV 394 >UniRef50_A6SWF1 Sensory box histidine kinase n=1 Tax=Janthinobacterium sp. Marseille RepID=A6SWF1_JANMA Length = 626 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 103/222 (46%), Gaps = 15/222 (6%) Query: 348 QAQKHFQQLL------LMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSI 401 Q+QK +QL + +ER IARELHD LAQ LS LR+ ++++K ++ Sbjct: 410 QSQKLLRQLADRSETSIEDERKHIARELHDDLAQHLSALRMNVSVMKLEFGHLSSAFSGQ 469 Query: 402 MADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRL---- 457 + L+ + R ++T R T L + + L+ L S + CRL Sbjct: 470 AETMIERLDATIKIARNVITALRPTA----LDMGIVQALEWLVKDFSTHKEISCRLHIHD 525 Query: 458 PTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPK 517 L L + + +I +E++ N +HA A + V+ ++ DG + IRD+G G Sbjct: 526 ENLILSDRSATAIFRIAQESLRNISRHAEACNVDVN-LSHKDGMCLLAIRDDGRGFNTTN 584 Query: 518 EPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAE 559 P +GL ++ER LGG + G GT + ++ + E Sbjct: 585 VPFNSFGLMGIKERVLILGGKVEIESEEGQGTTIRVNIPTTE 626 >UniRef50_B5WB73 Histidine kinase n=1 Tax=Burkholderia sp. H160 RepID=B5WB73_9BURK Length = 232 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 103/202 (50%), Gaps = 8/202 (3%) Query: 366 ARELHDSLAQVLSYLRIQLT-LLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFR 424 ARE+HD L +L+ +++ +L+R+ D A + + Q D R++ E L Sbjct: 36 AREVHDVLGGILTAIKMDANRILERAKASDLAEIANDLITSVQEGIDVVREVSESLHP-- 93 Query: 425 LTLQQADLPSALREMLDTL--QNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAM 482 L L +A+R LD ++ S++L+L+ LP L ++ + +I +EA+ N + Sbjct: 94 AALDHLGLDAAIRNHLDRFCPRHGLSSELSLNRSLPLLTSVQKLAAY--RIFQEALTNVV 151 Query: 483 KHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFS 542 +HANA+ + V ++ D +++ D+G+G+ P G G+ MRERA +GG Sbjct: 152 RHANATRVVVRLISG-DRKLELFVEDDGVGVDPPSRRAGAMGIVGMRERARDVGGEFLVL 210 Query: 543 QPSGGGTLVSISFRSAEGEESQ 564 + GT + +SF GE+ + Sbjct: 211 PRTPRGTCIKLSFPLGSGEQDK 232 >UniRef50_B4CWL9 Integral membrane sensor signal transduction histidine kinase n=2 Tax=Chthoniobacter flavus Ellin428 RepID=B4CWL9_9BACT Length = 339 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/193 (28%), Positives = 97/193 (50%), Gaps = 6/193 (3%) Query: 361 ERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELL 420 E+ I ++LHD + Q L+ L LK + + + + + + L+ A + R L Sbjct: 138 EQMRIGQDLHDGVCQTLAALDCAAQCLKMDLETEGSPQVKLAGEIQKRLSAATLEARNLA 197 Query: 421 -TTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVL 479 + +T+Q L ALRE++ K+ + + D+++ +HL +I +EA+ Sbjct: 198 RGIYPVTIQGDGLGLALRELVMMTNTLCQGKIGFESDDEFVVKDSEVALHLYRITQEALS 257 Query: 480 NAMKHANASEIAVSCVTAPDGNH-TVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGT 538 NAM+HANA+ ++V D H T+ + D+G G P+G G MR RA+ +G Sbjct: 258 NAMRHANATHVSVR--LRRDQQHLTISVMDDGCGSAIQARPDG-MGWRTMRYRAKLIGAE 314 Query: 539 LTF-SQPSGGGTL 550 + S+P+GG T+ Sbjct: 315 IKMESKPAGGTTV 327 >UniRef50_D1SFU8 Histidine kinase n=1 Tax=Micromonospora aurantiaca ATCC 27029 RepID=D1SFU8_9ACTO Length = 388 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 67/196 (34%), Positives = 98/196 (50%), Gaps = 13/196 (6%) Query: 360 EERATIARELHDSLAQVLSYLRIQLT-LLKRSIPEDNATAQSIMADFSQALNDAYRQLRE 418 EER IARELHD L LS + +Q + L R PE +A A +++ S+ + R+LR Sbjct: 178 EERLRIARELHDLLGHHLSLISVQASAALHRPDPERSAEALTVIKQTSR---ETLRELRA 234 Query: 419 LLTTFRLTLQQADLPSALREMLDTLQNQTSAK-LTLDCRLP-TLALDAQMQVHLLQIIRE 476 L R + P+ + LD L + LT+ + T L ++ + +I++E Sbjct: 235 ALGVLRQESTTPNRPAPGLDRLDELVTAAGRRGLTVRTEVTETGPLPPEVDLSAYRIVQE 294 Query: 477 AVLNAMKHANASEIAVSCVTAPDGNHT-VYIRDNGIGIGEPKEPEGHYGLNIMRERAERL 535 A+ N +HA A+ V V PDG+ V + D+G G P P G+ G+ M ERA L Sbjct: 295 ALTNVSRHAGATTAVVRVV--PDGDEVLVEVADDGAG---PAGPPGN-GILGMGERARAL 348 Query: 536 GGTLTFSQPSGGGTLV 551 GG+LT GG LV Sbjct: 349 GGSLTTGPGPDGGFLV 364 >UniRef50_C0ZBE0 Two-component sensor histidine kinase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZBE0_BREBN Length = 278 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/199 (26%), Positives = 86/199 (43%), Gaps = 13/199 (6%) Query: 360 EERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLREL 419 EER +ARELHD +AQ L +L ++L Q + D A++ +R+ Sbjct: 89 EERERLARELHDGIAQSLFFLNVKLK-------------QGHLDDARIAVSAIDNHVRQA 135 Query: 420 LTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVL 479 + R ++ L L + L + + + + +V L II+EA Sbjct: 136 IFNLRSLPEEGSLDQRLEKWLAQWSALSGIDVASELHVKDGFFTPTAEVQLFGIIQEAFA 195 Query: 480 NAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTL 539 N KH+ A + T + + D+GIGI P YGL++MRERA +L ++ Sbjct: 196 NIRKHSQAKHSWIHLTTDEPTGWVLSVEDDGIGISNPFPDTKKYGLSMMRERARQLNASI 255 Query: 540 TFSQPSGGGTLVSISFRSA 558 GGT++ +S S Sbjct: 256 DIQLRPAGGTIIRLSSHSG 274 >UniRef50_B0TH54 Sensor histidine kinase, putative n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TH54_HELMI Length = 382 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 63/202 (31%), Positives = 97/202 (48%), Gaps = 11/202 (5%) Query: 361 ERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELL 420 ER +ARE+HD AQ ++ L +Q+ L +R + D + + + L D+ ++LR++L Sbjct: 176 ERFRLAREIHDGPAQGMNSLVLQVELCERLLQTDPGRVRRELQELKGRLRDSLKELRKIL 235 Query: 421 TTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLA--LDAQMQVHLLQIIREA 477 R L L A+R +T L ++ R A L+ +V + ++I+EA Sbjct: 236 YDLRPHGLDDQGLIEAIRRYTADFSERTG--LAVETRFFGQACRLERAYEVAIFRMIQEA 293 Query: 478 VLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPK---EPEGHYGLNIMRERAER 534 + N KHA A + V+ AP +V +RD+G+G P +GL MRERAE Sbjct: 294 LQNVWKHAGAKRVQVAFEIAPQAV-SVIVRDDGVGFDVADIFARPGDRFGLCGMRERAEL 352 Query: 535 LGGTLTFSQPSGGGTLVSISFR 556 L G G GT I FR Sbjct: 353 LDGEWEVLSRPGQGT--QIKFR 372 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P27896 Nitrate/nitrite sensor protein narQ n=113 Tax=En... 733 0.0 UniRef50_A8GHJ7 Integral membrane sensor signal transduction his... 569 e-161 UniRef50_Q5E3J3 Sensory histidine kinase in two-component regula... 540 e-152 UniRef50_D0IAW0 Nitrate/nitrite sensor protein n=3 Tax=Gammaprot... 530 e-149 UniRef50_A7JYP2 Histidine kinase domain protein n=7 Tax=Vibrio R... 524 e-147 UniRef50_C5S0V3 Nitrate/nitrite sensor protein NarQ n=6 Tax=Gamm... 521 e-146 UniRef50_P44604 Sensor protein narQ homolog n=30 Tax=Gammaproteo... 518 e-145 UniRef50_A5EZZ3 Nitrate/nitrite sensor protein NarQ n=51 Tax=Vib... 518 e-145 UniRef50_Q2C653 Hypothetical nitrate/nitrite sensor protein NarQ... 515 e-144 UniRef50_A0KIL7 Nitrate/nitrite sensor histidine kinase NarQ n=2... 477 e-133 UniRef50_B8EB80 Histidine kinase n=20 Tax=Shewanella RepID=B8EB8... 459 e-127 UniRef50_A4VHY8 Two-component sensor NarX n=3 Tax=Pseudomonas Re... 453 e-126 UniRef50_B2CI54 Integral membrane sensor signal transduction his... 450 e-124 UniRef50_A6FC55 Hypothetical nitrate/nitrite sensor protein NarQ... 438 e-121 UniRef50_A1U593 Integral membrane sensor signal transduction his... 437 e-121 UniRef50_B7UUR7 Two-component sensor NarX n=7 Tax=Gammaproteobac... 437 e-121 UniRef50_A4TJU9 Nitrate/nitrite sensor protein n=29 Tax=Enteroba... 435 e-120 UniRef50_Q0A9X9 Signal transduction histidine kinase, nitrate/ni... 433 e-120 UniRef50_C7RBW7 Histidine kinase n=1 Tax=Kangiella koreensis DSM... 433 e-119 UniRef50_B4TXT2 Nitrate/nitrite sensor protein NarX n=69 Tax=Ent... 429 e-118 UniRef50_P0AFA3 Nitrate/nitrite sensor protein narX n=127 Tax=Ga... 428 e-118 UniRef50_Q2SF45 Signal transduction histidine kinase, nitrate/ni... 428 e-118 UniRef50_B4EWG1 Nitrate/nitrite teo-component system, sensor kin... 428 e-118 UniRef50_Q5QWJ9 Nitrate/nitrite sensor histidine kinase n=1 Tax=... 428 e-118 UniRef50_Q9F0Y0 Nitrate/nitrite sensor protein n=1 Tax=Pseudomon... 427 e-118 UniRef50_Q3SJ17 Periplasmic Sensor Signal Transduction Histidine... 426 e-117 UniRef50_A8FUN8 Two-component sensor NarX n=3 Tax=Shewanella Rep... 422 e-116 UniRef50_B2Q6G3 Putative uncharacterized protein n=3 Tax=Enterob... 418 e-115 UniRef50_C4GHV1 Putative uncharacterized protein n=1 Tax=Kingell... 415 e-114 UniRef50_A4BGQ5 Signal transduction histidine kinase, nitrate/ni... 414 e-114 UniRef50_A6D1I3 Signal transduction histidine kinase, nitrate/ni... 411 e-113 UniRef50_Q8VUK2 Putative nitrate/nitrite sensor protein n=1 Tax=... 407 e-112 UniRef50_B4S080 Signal transduction histidine kinase, nitrate/ni... 403 e-111 UniRef50_Q5NYZ8 Nitrate/nitrite sensor kinase n=1 Tax=Aromatoleu... 403 e-111 UniRef50_Q0HUB7 Signal transduction histidine kinase, nitrate/ni... 400 e-110 UniRef50_Q5P3L3 Nitrate/nitrite TWO-component sensor NARX n=1 Ta... 398 e-109 UniRef50_C5T4I9 GAF sensor signal transduction histidine kinase ... 396 e-108 UniRef50_Q4FU45 Signal transduction histidine kinase sensor n=2 ... 396 e-108 UniRef50_Q1ZGB4 Nitrate/nitrite sensor protein n=1 Tax=Psychromo... 395 e-108 UniRef50_C7I506 GAF sensor signal transduction histidine kinase ... 393 e-108 UniRef50_B4RLW4 NarX/NarQ n=17 Tax=Neisseria RepID=B4RLW4_NEIG2 393 e-107 UniRef50_A2SGG0 Signal transduction histidine kinase, nitrate/ni... 392 e-107 UniRef50_Q47HU2 GAF:ATP-binding region, ATPase-like:Histidine ki... 391 e-107 UniRef50_Q7NV12 Transmembrane nitrate/nitrite sensor kinase tran... 383 e-105 UniRef50_C1D9F9 NarX n=1 Tax=Laribacter hongkongensis HLHK9 RepI... 383 e-105 UniRef50_A9LZC9 Two-component system, NarL family, nitrate/nitri... 383 e-104 UniRef50_A1W358 Signal transduction histidine kinase, nitrate/ni... 382 e-104 UniRef50_A4G5M3 Putative Nitrate/nitrite sensor protein narX n=1... 379 e-103 UniRef50_C4KA07 GAF sensor signal transduction histidine kinase ... 377 e-103 UniRef50_C4K985 Histidine kinase n=1 Tax=Thauera sp. MZ1T RepID=... 371 e-101 UniRef50_C0DXB9 Putative uncharacterized protein n=1 Tax=Eikenel... 371 e-101 UniRef50_A5WD78 Integral membrane sensor signal transduction his... 369 e-100 UniRef50_Q46R21 GAF:ATP-binding region, ATPase-like:Histidine ki... 364 3e-99 UniRef50_B9Z081 Multi-sensor signal transduction histidine kinas... 358 3e-97 UniRef50_C0DXM5 Sensor protein n=1 Tax=Eikenella corrodens ATCC ... 336 2e-90 UniRef50_B8GUD0 GAF sensor signal transduction histidine kinase ... 298 4e-79 UniRef50_Q2Y9N2 Periplasmic sensor signal transduction histidine... 275 4e-72 UniRef50_D2T798 Sensor for nitrate reductase system, protein his... 258 4e-67 UniRef50_C5SBA0 Histidine kinase n=1 Tax=Allochromatium vinosum ... 247 7e-64 UniRef50_C0N1R0 Histidine kinase domain protein n=1 Tax=Methylop... 247 8e-64 UniRef50_Q67S65 Two-component sensor histidine kinase n=1 Tax=Sy... 247 1e-63 UniRef50_B7AAT7 Histidine kinase n=1 Tax=Thermus aquaticus Y51MC... 243 1e-62 UniRef50_Q5SJ33 Sensor histidine kinase n=3 Tax=Thermus RepID=Q5... 240 1e-61 UniRef50_B2AKD3 Putative multi-sensor signal transduction histid... 239 3e-61 UniRef50_D1C6S2 Histidine kinase n=1 Tax=Sphaerobacter thermophi... 239 3e-61 UniRef50_D1C419 Histidine kinase n=1 Tax=Sphaerobacter thermophi... 238 5e-61 UniRef50_Q025Z0 Histidine kinase n=1 Tax=Candidatus Solibacter u... 237 1e-60 UniRef50_Q7NE94 Glr3986 protein n=1 Tax=Gloeobacter violaceus Re... 236 2e-60 UniRef50_D1UN54 PAS/PAC sensor signal transduction histidine kin... 235 2e-60 UniRef50_A9B363 Integral membrane sensor signal transduction his... 235 3e-60 UniRef50_A1AXR2 Signal transduction histidine kinase, nitrate/ni... 235 5e-60 UniRef50_C6XAG1 Histidine kinase n=1 Tax=Methylovorus sp. SIP3-4... 234 7e-60 UniRef50_Q1AZP1 Periplasmic sensor signal transduction histidine... 234 9e-60 UniRef50_Q1IXN3 Periplasmic sensor signal transduction histidine... 232 3e-59 UniRef50_D1C9Z9 GAF sensor signal transduction histidine kinase ... 232 4e-59 UniRef50_Q3M1D8 Serine/threonine protein kinase and signal trans... 231 6e-59 UniRef50_B8CZJ7 Integral membrane sensor signal transduction his... 230 1e-58 UniRef50_Q1H0K4 Multi-sensor signal transduction histidine kinas... 230 2e-58 UniRef50_D1C657 GAF sensor signal transduction histidine kinase ... 229 2e-58 UniRef50_B2TAX2 PAS/PAC sensor signal transduction histidine kin... 229 3e-58 UniRef50_A3DEX1 Histidine kinase n=5 Tax=Clostridium RepID=A3DEX... 229 4e-58 UniRef50_Q67RQ8 Two-component system sensor kinase n=1 Tax=Symbi... 228 4e-58 UniRef50_C6QH09 Histidine kinase n=1 Tax=Hyphomicrobium denitrif... 228 4e-58 UniRef50_B2JVQ4 Integral membrane sensor signal transduction his... 228 5e-58 UniRef50_B8HT67 GAF sensor signal transduction histidine kinase ... 228 6e-58 UniRef50_B9L060 Putative two component system histidine kinase n... 228 6e-58 UniRef50_B9LCJ4 GAF sensor signal transduction histidine kinase ... 227 7e-58 UniRef50_C6CGT0 PAS/PAC sensor signal transduction histidine kin... 227 9e-58 UniRef50_Q1H473 Signal transduction histidine kinase, nitrate/ni... 227 1e-57 UniRef50_C0N6H4 Putative uncharacterized protein n=1 Tax=Methylo... 226 2e-57 UniRef50_C1CWD4 Putative histidine kinase, classic; putative mem... 225 3e-57 UniRef50_Q1IWU8 Multi-sensor signal transduction histidine kinas... 225 4e-57 UniRef50_C1F9F5 Two component regulator propeller/histidine kina... 225 4e-57 UniRef50_A5UUR7 Multi-sensor signal transduction histidine kinas... 225 5e-57 UniRef50_D1CB59 GAF sensor signal transduction histidine kinase ... 224 5e-57 UniRef50_B6JD37 Signal transduction histidine kinase containing ... 224 7e-57 UniRef50_Q47G83 PAS n=1 Tax=Dechloromonas aromatica RCB RepID=Q4... 223 2e-56 UniRef50_A6SWF1 Sensory box histidine kinase n=1 Tax=Janthinobac... 223 2e-56 UniRef50_B2VGC1 HrpX protein (Hrp cluster) n=6 Tax=Enterobacteri... 222 3e-56 UniRef50_A9WFF8 Histidine kinase dimerisation and phosphoaccepto... 222 3e-56 UniRef50_B4WPC3 GAF domain protein n=1 Tax=Synechococcus sp. PCC... 222 3e-56 UniRef50_UPI0001746019 hypothetical protein VspiD_01665 n=1 Tax=... 221 5e-56 UniRef50_B4D830 Integral membrane sensor signal transduction his... 221 6e-56 UniRef50_Q8YV44 Two-component sensor histidine kinase n=3 Tax=Cy... 221 7e-56 UniRef50_O32198 Sensor histidine kinase liaS n=5 Tax=Bacillus Re... 220 1e-55 UniRef50_A6CIM0 Multi-sensor signal transduction histidine kinas... 220 1e-55 UniRef50_C1XJE4 Histidine kinase n=2 Tax=Meiothermus RepID=C1XJE... 220 1e-55 UniRef50_Q3SG40 GAF Sensor Signal Transduction Histidine Kinase ... 220 1e-55 UniRef50_UPI00016987BE Periplasmic Sensor Signal Transduction Hi... 220 2e-55 UniRef50_C1XM57 Signal transduction histidine kinase, COG4585 n=... 218 3e-55 UniRef50_C4DRB4 Signal transduction histidine kinase, COG4585 n=... 218 4e-55 UniRef50_Q67L27 Two-component sensor histidine kinase n=1 Tax=Sy... 218 4e-55 UniRef50_B8G147 Multi-sensor signal transduction histidine kinas... 218 4e-55 UniRef50_C6BTX2 GAF sensor signal transduction histidine kinase ... 218 6e-55 UniRef50_Q7N5B4 Similar to nitrate/nitrite sensor protein NarX n... 217 7e-55 UniRef50_B1ZR83 Integral membrane sensor signal transduction his... 217 9e-55 UniRef50_Q3SJC2 Multi-sensor Signal Transduction Histidine Kinas... 217 1e-54 UniRef50_B0C7C8 GAF domain protein n=1 Tax=Acaryochloris marina ... 217 1e-54 UniRef50_A9B1S5 Multi-sensor signal transduction histidine kinas... 217 1e-54 UniRef50_B9XNW0 Multi-sensor signal transduction histidine kinas... 217 1e-54 UniRef50_B5I2X6 Two-component system sensor kinase n=10 Tax=Stre... 216 1e-54 UniRef50_C6P6J2 PAS/PAC sensor signal transduction histidine kin... 216 2e-54 UniRef50_B4CYV7 Histidine kinase n=1 Tax=Chthoniobacter flavus E... 216 2e-54 UniRef50_C6J152 Histidine kinase dimerization and phosphoaccepto... 216 2e-54 UniRef50_UPI00017449FC GAF domain protein n=1 Tax=Verrucomicrobi... 215 3e-54 UniRef50_Q81FX4 Two-component sensor protein yvqE n=44 Tax=Bacil... 215 3e-54 UniRef50_A9B046 Integral membrane sensor signal transduction his... 215 4e-54 UniRef50_Q2B2D2 Two-component sensor histidine kinase n=2 Tax=Ba... 215 4e-54 UniRef50_A7NRQ7 Integral membrane sensor signal transduction his... 215 4e-54 UniRef50_A5FQK5 Multi-sensor signal transduction histidine kinas... 215 5e-54 UniRef50_B8D0J3 Histidine kinase n=2 Tax=Clostridia RepID=B8D0J3... 215 5e-54 UniRef50_Q1D524 Sensor histidine kinase n=2 Tax=Cystobacterineae... 214 7e-54 UniRef50_A5GBT2 Integral membrane sensor signal transduction his... 214 7e-54 UniRef50_C1YIX9 Signal transduction histidine kinase, COG4585 n=... 213 1e-53 UniRef50_C8WYI2 Histidine kinase n=2 Tax=Alicyclobacillus acidoc... 213 1e-53 UniRef50_C9NJB7 GAF sensor signal transduction histidine kinase ... 213 1e-53 UniRef50_C9RWH5 Integral membrane sensor signal transduction his... 213 2e-53 UniRef50_C8NE28 Sensor histidine kinase n=1 Tax=Granulicatella a... 213 2e-53 UniRef50_Q2SUK5 Two-component hybrid sensor and regulator n=33 T... 213 2e-53 UniRef50_C6P056 GAF sensor signal transduction histidine kinase ... 213 2e-53 UniRef50_B4D2I1 Histidine kinase n=1 Tax=Chthoniobacter flavus E... 212 2e-53 UniRef50_UPI000169369A sensor histidine kinase n=1 Tax=Paenibaci... 212 3e-53 UniRef50_UPI0001B54FA0 histidine kinase n=1 Tax=Streptomyces sp.... 212 3e-53 UniRef50_Q5WCK2 Two-component sensor histidine kinase n=1 Tax=Ba... 212 4e-53 UniRef50_B5JKT1 Histidine kinase domain protein n=1 Tax=Verrucom... 212 4e-53 UniRef50_Q1ASU9 GAF sensor signal transduction histidine kinase ... 211 5e-53 UniRef50_C0Z627 Two-component sensor histidine kinase n=3 Tax=Ba... 211 5e-53 UniRef50_B5JFN8 Histidine kinase domain protein n=1 Tax=Verrucom... 211 6e-53 UniRef50_C6J7D3 ATP-binding region ATPase domain-containing prot... 211 7e-53 UniRef50_C1XTQ5 PAS domain S-box protein n=1 Tax=Meiothermus sil... 211 7e-53 UniRef50_B9XSJ3 Multi-sensor signal transduction histidine kinas... 211 8e-53 UniRef50_B2J8J6 Multi-sensor signal transduction histidine kinas... 210 8e-53 UniRef50_UPI00017893B7 integral membrane sensor signal transduct... 210 1e-52 UniRef50_B5JLS1 Histidine kinase domain protein n=1 Tax=Verrucom... 210 1e-52 UniRef50_Q47FQ9 Response regulator receiver:ATP-binding region, ... 210 1e-52 UniRef50_Q0A821 Signal transduction histidine kinase, nitrate/ni... 210 2e-52 UniRef50_A6WW19 Integral membrane sensor signal transduction his... 209 2e-52 UniRef50_D0BKY9 Sensor histidine kinase VraS n=1 Tax=Granulicate... 209 2e-52 UniRef50_D1CAA4 GAF sensor signal transduction histidine kinase ... 209 3e-52 UniRef50_B9TKD1 Putative uncharacterized protein (Fragment) n=1 ... 208 3e-52 UniRef50_Q45827 Uncharacterized sensor-like histidine kinase Cau... 208 4e-52 UniRef50_D2SEJ2 Integral membrane sensor signal transduction his... 208 4e-52 UniRef50_C0Q8Z0 Two-component hybrid sensor and response regulat... 208 4e-52 UniRef50_Q0KDJ4 Signal transduction histidine kinase containing ... 208 5e-52 UniRef50_A8LRP9 Integral membrane sensor signal transduction his... 208 6e-52 UniRef50_Q9KDL3 Two-component sensor histidine kinase n=1 Tax=Ba... 208 6e-52 UniRef50_B5VVU4 Integral membrane sensor signal transduction his... 208 6e-52 UniRef50_B1YJQ1 Integral membrane sensor signal transduction his... 208 6e-52 UniRef50_C3PKA7 Two-component system sensor kinase n=2 Tax=Coryn... 208 6e-52 UniRef50_Q8ERY5 Two-component sensor histidine kinase n=1 Tax=Oc... 207 7e-52 UniRef50_C1ACX8 Two-component histidine kinase n=1 Tax=Gemmatimo... 207 7e-52 UniRef50_A9WAP8 ATP-binding region ATPase domain protein n=3 Tax... 207 8e-52 UniRef50_B4CV46 Integral membrane sensor signal transduction his... 207 8e-52 UniRef50_Q13H12 PAS/PAC sensor signal transduction histidine kin... 207 8e-52 UniRef50_Q97F15 Membrane-associated sensory histidine kinase-lik... 207 9e-52 UniRef50_A4XZI6 Multi-sensor signal transduction histidine kinas... 207 1e-51 UniRef50_D2B2V1 Histidine kinase n=1 Tax=Streptosporangium roseu... 207 1e-51 UniRef50_A6GSY8 Sensory transduction histidine kinase n=1 Tax=Li... 207 1e-51 UniRef50_C4XMF3 Two-component sensor histidine kinase n=1 Tax=De... 207 1e-51 UniRef50_UPI00017468E2 histidine kinase n=1 Tax=Verrucomicrobium... 207 1e-51 UniRef50_B3U4S0 Response regulator receiver n=1 Tax=Candidatus N... 207 1e-51 UniRef50_C2C0V0 Possible histidine kinase n=5 Tax=Listeria RepID... 206 2e-51 UniRef50_C5CVV4 Histidine kinase n=2 Tax=Burkholderiales RepID=C... 206 2e-51 UniRef50_B1ZSZ0 Histidine kinase n=1 Tax=Opitutus terrae PB90-1 ... 206 2e-51 UniRef50_B2J8K5 Integral membrane sensor signal transduction his... 206 2e-51 UniRef50_A7NG30 Multi-sensor signal transduction histidine kinas... 205 3e-51 UniRef50_A9B5L1 Integral membrane sensor signal transduction his... 205 3e-51 UniRef50_Q0S8Z4 Sensor kinase, two-component system n=2 Tax=Rhod... 205 3e-51 UniRef50_C1A5E7 Two-component histidine kinase n=1 Tax=Gemmatimo... 205 3e-51 UniRef50_UPI0001C312DE integral membrane sensor signal transduct... 205 4e-51 UniRef50_C6NZS6 Multi-sensor signal transduction histidine kinas... 205 6e-51 UniRef50_Q747N5 Sensory box histidine kinase n=2 Tax=Geobacter R... 204 6e-51 UniRef50_B8HNY8 Histidine kinase n=1 Tax=Cyanothece sp. PCC 7425... 204 6e-51 UniRef50_B0TH54 Sensor histidine kinase, putative n=1 Tax=Heliob... 204 7e-51 UniRef50_A0R9R9 Possible sensor histidine kinase domain n=36 Tax... 204 8e-51 UniRef50_Q7NNR3 Glr0347 protein n=1 Tax=Gloeobacter violaceus Re... 204 9e-51 UniRef50_C6CVS1 Histidine kinase n=1 Tax=Paenibacillus sp. JDR-2... 204 9e-51 UniRef50_Q1J3L3 Periplasmic sensor signal transduction histidine... 204 9e-51 UniRef50_B4WQU2 GAF domain protein n=1 Tax=Synechococcus sp. PCC... 204 9e-51 UniRef50_UPI0001B54039 histidine kinase n=1 Tax=Streptomyces sp.... 203 1e-50 UniRef50_Q024A3 Histidine kinase n=1 Tax=Candidatus Solibacter u... 203 2e-50 UniRef50_Q74GJ3 Sensory box histidine kinase n=1 Tax=Geobacter s... 203 2e-50 UniRef50_C5C2U0 Histidine kinase n=2 Tax=Actinomycetales RepID=C... 202 2e-50 UniRef50_A1AUQ4 PAS/PAC sensor signal transduction histidine kin... 202 3e-50 UniRef50_A1WYG6 Histidine kinase n=1 Tax=Halorhodospira halophil... 202 4e-50 UniRef50_A4J6C1 Histidine kinase n=2 Tax=Peptococcaceae RepID=A4... 202 4e-50 UniRef50_C3RLD8 Two-component system sensor histidine kinase n=3... 202 5e-50 UniRef50_B2A6W3 Integral membrane sensor signal transduction his... 201 5e-50 UniRef50_A9B913 Multi-sensor signal transduction histidine kinas... 201 5e-50 UniRef50_A3NKQ6 Signal transduction histidine kinase n=29 Tax=Bu... 201 5e-50 UniRef50_C0XNJ5 Two component system histidine kinase n=1 Tax=Co... 201 5e-50 UniRef50_D1CF52 Two component transcriptional regulator, LuxR fa... 201 7e-50 UniRef50_B1ZUT3 Integral membrane sensor signal transduction his... 201 7e-50 UniRef50_B4D6U9 Multi-sensor signal transduction histidine kinas... 201 7e-50 UniRef50_B9XQH3 PAS/PAC sensor signal transduction histidine kin... 201 8e-50 UniRef50_D2ARZ7 Histidine kinase n=1 Tax=Streptosporangium roseu... 201 8e-50 UniRef50_C4DC51 Histidine kinase with GAF domain n=2 Tax=Actinom... 200 8e-50 UniRef50_B2J2K6 Integral membrane sensor signal transduction his... 200 9e-50 UniRef50_B2JH43 PAS/PAC sensor signal transduction histidine kin... 200 1e-49 UniRef50_B2GCM4 Two-component sensor histidine kinase n=8 Tax=La... 200 1e-49 UniRef50_C6CT57 Histidine kinase n=1 Tax=Paenibacillus sp. JDR-2... 200 1e-49 Sequences not found previously or not previously below threshold: UniRef50_A8VTE1 Short-chain dehydrogenase/reductase SDR n=1 Tax=... 242 2e-62 UniRef50_Q1CZ92 Sensor histidine kinase n=1 Tax=Myxococcus xanth... 218 3e-55 UniRef50_D1CE67 Multi-sensor signal transduction histidine kinas... 217 1e-54 UniRef50_B0K3K4 Histidine kinase n=11 Tax=Thermoanaerobacterales... 215 3e-54 UniRef50_B2T8J5 Multi-sensor signal transduction histidine kinas... 212 3e-53 UniRef50_A6SXZ6 Two-component sensor histidine kinase n=2 Tax=Ox... 212 3e-53 UniRef50_D2B7Q9 Histidine kinase n=1 Tax=Streptosporangium roseu... 212 3e-53 UniRef50_B9XSI9 Multi-sensor signal transduction histidine kinas... 210 1e-52 UniRef50_C5AIA0 Multi-sensor signal transduction histidine kinas... 209 2e-52 UniRef50_C5V7S2 PAS/PAC sensor signal transduction histidine kin... 209 2e-52 UniRef50_Q67MG9 Sensor protein n=1 Tax=Symbiobacterium thermophi... 208 4e-52 UniRef50_C6XAR1 PAS/PAC sensor signal transduction histidine kin... 208 5e-52 UniRef50_B8FFK0 PAS/PAC sensor signal transduction histidine kin... 208 6e-52 UniRef50_Q2LRG0 Signal transduction histidine kinase n=1 Tax=Syn... 208 6e-52 UniRef50_Q1AVR5 Periplasmic sensor signal transduction histidine... 206 2e-51 UniRef50_B4UAL2 Integral membrane sensor signal transduction his... 204 8e-51 UniRef50_Q67QY8 Two-component sensor histidine kinase n=1 Tax=Sy... 204 9e-51 UniRef50_C6D0G7 GAF sensor signal transduction histidine kinase ... 203 1e-50 UniRef50_C7Q6M5 GAF sensor signal transduction histidine kinase ... 203 1e-50 UniRef50_Q0AF09 Multi-sensor signal transduction histidine kinas... 203 2e-50 UniRef50_UPI0001C314AD GAF sensor signal transduction histidine ... 203 2e-50 UniRef50_C5UZV3 PAS/PAC sensor signal transduction histidine kin... 202 2e-50 UniRef50_C6WV68 PAS/PAC sensor signal transduction histidine kin... 202 3e-50 UniRef50_C0ZJS5 Two-component sensor histidine kinase n=1 Tax=Br... 202 3e-50 UniRef50_D1AAA6 Histidine kinase n=1 Tax=Thermomonospora curvata... 202 4e-50 UniRef50_B4D5C3 Histidine kinase n=1 Tax=Chthoniobacter flavus E... 201 5e-50 UniRef50_Q0B944 Multi-sensor signal transduction histidine kinas... 201 5e-50 UniRef50_C3BJ53 Signal transduction histidine kinase n=3 Tax=Bac... 201 7e-50 UniRef50_B1ZU88 Histidine kinase n=2 Tax=Opitutus terrae PB90-1 ... 200 1e-49 >UniRef50_P27896 Nitrate/nitrite sensor protein narQ n=113 Tax=Enterobacteriaceae RepID=NARQ_ECOLI Length = 566 Score = 733 bits (1892), Expect = 0.0, Method: Composition-based stats. Identities = 566/566 (100%), Positives = 566/566 (100%) Query: 1 MIVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDL 60 MIVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDL Sbjct: 1 MIVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDL 60 Query: 61 QSGSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPW 120 QSGSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPW Sbjct: 61 QSGSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPW 120 Query: 121 YQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPL 180 YQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPL Sbjct: 121 YQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPL 180 Query: 181 NQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDL 240 NQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDL Sbjct: 181 NQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDL 240 Query: 241 HEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNP 300 HEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNP Sbjct: 241 HEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNP 300 Query: 301 ELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLME 360 ELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLME Sbjct: 301 ELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLME 360 Query: 361 ERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELL 420 ERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELL Sbjct: 361 ERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELL 420 Query: 421 TTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLN 480 TTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLN Sbjct: 421 TTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLN 480 Query: 481 AMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLT 540 AMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLT Sbjct: 481 AMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLT 540 Query: 541 FSQPSGGGTLVSISFRSAEGEESQLM 566 FSQPSGGGTLVSISFRSAEGEESQLM Sbjct: 541 FSQPSGGGTLVSISFRSAEGEESQLM 566 >UniRef50_A8GHJ7 Integral membrane sensor signal transduction histidine kinase n=3 Tax=Enterobacteriaceae RepID=A8GHJ7_SERP5 Length = 560 Score = 569 bits (1467), Expect = e-161, Method: Composition-based stats. Identities = 304/560 (54%), Positives = 388/560 (69%), Gaps = 3/560 (0%) Query: 1 MIVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDL 60 M+VKR V++SLA+A F IV+LS+LSTG+AL T+A SLRDAEA+NIAGSLRMQSYRL YDL Sbjct: 1 MLVKRSVTSSLAKALFCIVILSVLSTGLALTTVADSLRDAEAVNIAGSLRMQSYRLAYDL 60 Query: 61 QSGSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPW 120 +P+L H ++Q+L +P L L+ +YVP V+ +Y L W + ++ G Sbjct: 61 TGPAPELEQHLLQYRQSLQAPALQKLDRFYVPAEVREKYLSLQHAWQPLAQQIQAGQSAD 120 Query: 121 YQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPL 180 YQANI YVNQID FVLALQ Y+E K+ +V AIS+ G I I LV F +R +R QVVAPL Sbjct: 121 YQANIAGYVNQIDHFVLALQRYSELKLTIVAAISVLGFIAIIGLVLFCIRFMRRQVVAPL 180 Query: 181 NQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDL 240 LV ASQR++ F+ PPLDT LPNELG+L++ F MS +L KLY SLE V+EKT+ L Sbjct: 181 KHLVDASQRVQQRDFNHPPLDTALPNELGVLSQAFTAMSGDLAKLYESLEQKVQEKTQRL 240 Query: 241 HEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGEN---WRISEGQ 297 +A + LEVLY CSQALN QID F IL IVR +E + LNV ++ W++ G+ Sbjct: 241 QQANKTLEVLYNCSQALNVRQIDQQAFEKILHIVRQSEDLHCIRLNVADSLSEWQLRSGR 300 Query: 298 PNPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLL 357 P+P L Q L + + GEL WQ+ L+ SV++ML RG+YFN+AQK Q L Sbjct: 301 PSPTLAWQSLTIIQGDKPLGELSWQHKEQPPHPHLMQSVANMLSRGVYFNRAQKQHMQFL 360 Query: 358 LMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLR 417 LMEERATIARELHDSLAQ LS+LRIQLTLL+R++ + AQ I++DF QAL DAYRQLR Sbjct: 361 LMEERATIARELHDSLAQALSFLRIQLTLLRRTLADSTPEAQEIISDFDQALADAYRQLR 420 Query: 418 ELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREA 477 ELLTTFRL +Q+ADL +AL ++L L+ T A++ L CRL + AL+AQ QVH LQI+REA Sbjct: 421 ELLTTFRLNIQEADLNTALHQLLAPLKVLTDARIQLHCRLSSQALNAQQQVHALQIVREA 480 Query: 478 VLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGG 537 VLNA+KHA A EI + C +G++++ I D+G GI EPEGHYGL IM ERA RLGG Sbjct: 481 VLNAIKHAQAQEIVIRCEMTAEGDNSISIADDGCGIASLNEPEGHYGLTIMSERAARLGG 540 Query: 538 TLTFSQPSGGGTLVSISFRS 557 TL + GT V ++F Sbjct: 541 TLRIQRGEPDGTEVRLTFPP 560 >UniRef50_Q5E3J3 Sensory histidine kinase in two-component regulatory system with NarP (NarL) n=3 Tax=Aliivibrio RepID=Q5E3J3_VIBF1 Length = 563 Score = 540 bits (1392), Expect = e-152, Method: Composition-based stats. Identities = 224/555 (40%), Positives = 338/555 (60%), Gaps = 8/555 (1%) Query: 7 VSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQSGSPQ 66 ++ ++A+ IV++SI++T +AL+TL+SSL+DAEA+NIAGSLRMQSYRL YD+++ SP+ Sbjct: 9 LTRTIAQVMLLIVMISIITTSLALITLSSSLKDAEAVNIAGSLRMQSYRLAYDIETNSPE 68 Query: 67 LNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPWYQANIN 126 L H F Q++ SP +L+ W+VP+ ++ Y + WL + L + Y ++ Sbjct: 69 LIEHLDKFSQSIESPSFKSLDQWFVPDDIEDYYEDIRLQWLSLQPSLLSDNKQIYLNKVS 128 Query: 127 NYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTA 186 +V++ID FV LQ ++ERK+ L+ I G I F + + ++V+PL+ LV A Sbjct: 129 LFVDEIDHFVFRLQEFSERKLQLLSLIGALGLSLIVFSSIFIIFFTQRKIVSPLHHLVAA 188 Query: 187 SQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRR 246 S + G + +D N NELG L FN M+ ++ YR LE+ VE+KT+ L +A R Sbjct: 189 SHAMTKGNYS-VQVDLNSDNELGQLGNAFNHMTRQVDLSYRELESRVEDKTKKLSQANRS 247 Query: 247 LEVLYQCSQALNTSQIDVHCFRHILQIVRDNEA----AEYLELNVGENWRISEGQPNPEL 302 L +LYQCSQ L+ SQ+D F++IL + E +E G +W I+ G+P+ E Sbjct: 248 LMILYQCSQQLSASQLDEQAFKNILDTFTNIEGIISARLIVEEESGGDWEITSGEPD-ES 306 Query: 303 PMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEER 362 P + + + G L WQ S + L+ ++S++L RG+++NQAQK QL+L+EER Sbjct: 307 PWSLQELCIDGEQLGYLLWQESLPCPDQKLIINISNILARGIFYNQAQKQTHQLILLEER 366 Query: 363 ATIARELHDSLAQVLSYLRIQLTLLKRSIPE-DNATAQSIMADFSQALNDAYRQLRELLT 421 +TIARELHDSLAQ LSYL+IQ TLLKR + + D + + + + L AY QLR LL Sbjct: 367 STIARELHDSLAQSLSYLKIQTTLLKRQLEKCDCINTSTTLVELDEGLKSAYSQLRGLLN 426 Query: 422 TFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNA 481 TFRLT+ +A AL+E++ TL +QT + L+ LP+L ++AQ VHLLQ+IREA LNA Sbjct: 427 TFRLTINKAHFGEALQEIMTTLASQTKINIHLNNELPSLPINAQQHVHLLQLIREATLNA 486 Query: 482 MKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTF 541 +KH+ A I ++C + + I D+G+G +E HYGL IM+ERA + G L+ Sbjct: 487 IKHSKADNIIITCFQEGEQG-CINIEDDGVGFDPTEEKINHYGLRIMQERANCVHGKLSI 545 Query: 542 SQPSGGGTLVSISFR 556 + G V++ F Sbjct: 546 TSEIDNGCTVNVMFP 560 >UniRef50_D0IAW0 Nitrate/nitrite sensor protein n=3 Tax=Gammaproteobacteria RepID=D0IAW0_VIBHO Length = 594 Score = 530 bits (1366), Expect = e-149, Method: Composition-based stats. Identities = 230/560 (41%), Positives = 333/560 (59%), Gaps = 8/560 (1%) Query: 1 MIVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDL 60 +IVK+ V+ +AR+ I+ L+++ TG A+ TLASSL DA AIN +GSLRMQSYR+ YD+ Sbjct: 35 IIVKQSVTTIVARSLIGILFLAVIITGFAIFTLASSLNDAAAINTSGSLRMQSYRMAYDI 94 Query: 61 QSGSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPW 120 +L H F+Q+L +P L L+ + VP+ ++ RY L W+++ L D + Sbjct: 95 VLAPSRLPGHIDNFEQSLLAPELRILDNFAVPDEIRERYHSLIERWIKLRPELESDDRAF 154 Query: 121 YQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPL 180 Y + +VN ID FV ALQ ++E K+ ++ + G I LV F ++ + ++V PL Sbjct: 155 YIEQVGLFVNDIDRFVFALQQHSENKLQVLAMVGSGGLGLILALVLFLIQYTQRRIVFPL 214 Query: 181 NQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDL 240 N LV ASQ+I++ +FD+ NELG+L+ +F M+SEL LY LE + KT+ L Sbjct: 215 NMLVKASQQIQNREFDAELPPAR-NNELGVLSNSFALMASELKGLYADLEHKITTKTQKL 273 Query: 241 HEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVG----ENWRISEG 296 +A + L +LY CS+ L+++ ++ F +L I + + + L L +W I+ G Sbjct: 274 TKANQSLNILYDCSKQLSSTFLNRESFERMLAITLNADGVKALSLQAHNKNQSDWEIAAG 333 Query: 297 QPNPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQL 356 P LP+ + +G L WQ + LL++++S+L RG+Y+N AQK L Sbjct: 334 FPEGGE-WFELPLILDGESFGTLKWQGNPDIVDNNLLSNLASILARGVYYNHAQKQAMHL 392 Query: 357 LLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIP-EDNATAQSIMADFSQALNDAYRQ 415 +MEERAT+ARELHDS+AQ LSYL+IQ +LLKR + + I D S+ L AY Q Sbjct: 393 AVMEERATLARELHDSIAQSLSYLKIQTSLLKRHLKLINAPDCNDIAHDISKQLRIAYDQ 452 Query: 416 LRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIR 475 LRELLT FRL+L D AL EM++TLQ QT+A LT+ L TL++DAQ Q+H+LQIIR Sbjct: 453 LRELLTAFRLSLSHGDFGLALHEMIETLQGQTTATLTVSSDLDTLSMDAQRQMHILQIIR 512 Query: 476 EAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERL 535 EA NA+KHA A I V C V I D+G+G +E HYGLNIM+ER+ L Sbjct: 513 EACSNAIKHAKAEHITVRCFQHSH-QARVDITDDGVGFSLIEEKPDHYGLNIMQERSSML 571 Query: 536 GGTLTFSQPSGGGTLVSISF 555 GG L + G V+++F Sbjct: 572 GGDLKITTAPEKGCQVTLTF 591 >UniRef50_A7JYP2 Histidine kinase domain protein n=7 Tax=Vibrio RepID=A7JYP2_VIBSE Length = 584 Score = 524 bits (1349), Expect = e-147, Method: Composition-based stats. Identities = 237/569 (41%), Positives = 346/569 (60%), Gaps = 14/569 (2%) Query: 3 VKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQS 62 VK+ V+ ++A A I+LLS+ +TG A+ TLASSL DAEA+N+AGS+RMQSYRL D+Q Sbjct: 11 VKKSVTRTIASAMLLILLLSVATTGFAIFTLASSLNDAEAVNVAGSMRMQSYRLANDIQV 70 Query: 63 GSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPWYQ 122 S ++H F+ +++SP + L W VPE + Y L W E+ + L + YQ Sbjct: 71 KSVDYSSHIDAFEHSIYSPSMKALQHWSVPEDITHDYYRLIMRWHELKSVLRGDNPAEYQ 130 Query: 123 ANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQ 182 + +V QID FV LQ ++E+K++ + I G GI + F + +R +VV PL Sbjct: 131 LLVAGFVKQIDEFVFKLQSFSEQKLINLAWIGGLGLGGILCVSMFVVHFVRLEVVRPLRA 190 Query: 183 LVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHE 242 LV AS++I++ F+ LD + NE+G+L +TFN+M+++L KLYR LE +V+EKTR L Sbjct: 191 LVFASEQIKNRSFN-ISLDVSSDNEMGILTRTFNRMATDLGKLYRGLEQAVDEKTRKLQH 249 Query: 243 AKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNV----GENWRISEG-- 296 A + LEVLY S+ L S+I+ F+ ILQ + E + ++L + +W + EG Sbjct: 250 ANQSLEVLYDSSKELTASRINQDNFQAILQHIASLEGIKAVKLEIEQLGEPSWILMEGEE 309 Query: 297 -QPNPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQ 355 + + +T+ G L+W+ +E L+++ +L R +Y+N+AQ+ +Q Sbjct: 310 CCHDCDEDCHSKALTLDGEHLGYLYWKAGLPCPNEALIDNFVQILSRAVYYNRAQRQAEQ 369 Query: 356 LLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDN-----ATAQSIMADFSQALN 410 +LLMEERATIARELHDSLAQ LSYL+IQ+ LLKRS+ A A ++A+ L+ Sbjct: 370 ILLMEERATIARELHDSLAQALSYLKIQVALLKRSVKNLPDEKAIAQANQVIAELDTGLS 429 Query: 411 DAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHL 470 AY QLRELLTTFRLT+++ AL++M++TL QT A +TL RL + LDA QVHL Sbjct: 430 AAYTQLRELLTTFRLTIKEGSFGQALQDMVETLNEQTVADITLKNRLSSTELDAHQQVHL 489 Query: 471 LQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRE 530 LQ+IREA +NA+KHA A I + C+ DG TV + D+GIG E HYG++IM+E Sbjct: 490 LQLIREAAINAIKHAQADNIHIQCL-DNDGKVTVTVTDDGIGFEHQDEKLNHYGMSIMQE 548 Query: 531 RAERLGGTLTFSQPSGGGTLVSISFRSAE 559 RA RL L G V + F+ ++ Sbjct: 549 RAARLHADLHIEASINKGCTVKLEFQHSK 577 >UniRef50_C5S0V3 Nitrate/nitrite sensor protein NarQ n=6 Tax=Gammaproteobacteria RepID=C5S0V3_9PAST Length = 572 Score = 521 bits (1343), Expect = e-146, Method: Composition-based stats. Identities = 242/558 (43%), Positives = 335/558 (60%), Gaps = 5/558 (0%) Query: 4 KRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQSG 63 K ++ + FF I+ + L +GI+L + S+ DA IN++GSLR QSYR Y++ Sbjct: 9 KNSIARRIGLYFFIIIGFATLISGISLGIMWSNKSDASLINVSGSLRYQSYRFWYEMNHA 68 Query: 64 SPQLNAHRQLFQQALHSPVLTNLNVWYV-PEAVKTRYAHLNANWLEMNNRLSKGDLPWYQ 122 + + ++ +LHSP L LN Y+ P+ VK RY L W EM + D Y Sbjct: 69 PENIELRLEEYRASLHSPELQALNSSYLLPKEVKARYQRLKDVWEEMALYIRHQDHESYL 128 Query: 123 ANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQ 182 + I +YV +ID FV ALQ +AE K+ + +++ + I L ++ + R +++ L+Q Sbjct: 129 SRIEHYVKEIDAFVSALQKFAEFKLKIAISVIAISMLLIIALAYYGIWYTRKRIIKHLDQ 188 Query: 183 LVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHE 242 LV ASQ+I+ FD L N PNELG+L+KTF QM SEL KLY SLE V +KTR L Sbjct: 189 LVLASQQIQQEDFDHVSLAINEPNELGVLSKTFTQMVSELKKLYTSLEDKVADKTRRLTA 248 Query: 243 AKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNV--GENWRISEGQPNP 300 R + VLY CSQ L + + +L+ V NE + + L V + W I+ Sbjct: 249 VNRSMMVLYHCSQILTSKPVSRTLLLQVLERVLANEQLKGIALEVYGADYWNITIDTDLL 308 Query: 301 ELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLME 360 Q + ++ L W++S + E LL SV+ M+GR +Y Q K QQL+LME Sbjct: 309 SEQWQQYEIAIENEKIAMLRWKSSLLCPDERLLQSVAEMIGRSIYVVQNHKQQQQLILME 368 Query: 361 ERATIARELHDSLAQVLSYLRIQLTLLKR--SIPEDNATAQSIMADFSQALNDAYRQLRE 418 ER+ IARELHDSLAQ L++ +IQ+ LL+R I +D ++I+ D +ALNDAY QLRE Sbjct: 369 ERSIIARELHDSLAQSLTFFKIQIRLLQRNGEIEQDWEKQKAILNDLEKALNDAYSQLRE 428 Query: 419 LLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAV 478 LL+TFRLT+++A+L SAL MLDTL+ +TSA+++L C+LP+L AQ QVH+LQI+REAV Sbjct: 429 LLSTFRLTIEEANLTSALERMLDTLRARTSAQISLTCKLPSLMFSAQEQVHVLQIVREAV 488 Query: 479 LNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGT 538 +NA+KHA+ASEI V T DG H + IRDNG GI EPEGHYGL IM+ERA L G Sbjct: 489 INAIKHADASEIEVIAETNADGEHCLMIRDNGKGIETDIEPEGHYGLTIMKERATELHGE 548 Query: 539 LTFSQPSGGGTLVSISFR 556 S GG LV + Sbjct: 549 FKIQNRSEGGALVMVILP 566 >UniRef50_P44604 Sensor protein narQ homolog n=30 Tax=Gammaproteobacteria RepID=NARQ_HAEIN Length = 567 Score = 518 bits (1334), Expect = e-145, Method: Composition-based stats. Identities = 215/564 (38%), Positives = 346/564 (61%), Gaps = 7/564 (1%) Query: 1 MIVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDL 60 M K VS +A+ F I++++ + + ++L ++S+ DAEAINI+GSLRMQSYRL Y++ Sbjct: 1 MYTKGSVSTRIAKYLFIILIVAGVISSLSLAIMSSNKYDAEAINISGSLRMQSYRLLYEM 60 Query: 61 QSGSPQLNAHRQLFQQALHSPVLTNL-NVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLP 119 Q + + + + +LHS L + N ++ P +K Y ++ W M + D+ Sbjct: 61 QEQPESVETNLRRYHISLHSSALLEVQNQFFTPNVLKHSYQNILQRWTNMEKYARQQDVK 120 Query: 120 WYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAP 179 Y + +YV +D FV LQ ++E+K +L V++ + I +V + + +VV P Sbjct: 121 NYSKQLTDYVADVDYFVFELQRFSEQKWILGVSVLGFAMLLILLMVSYVIWYTNREVVKP 180 Query: 180 LNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRD 239 L+ + AS +++ QF+ PLDT NELG LA+ F QMS+EL +LY LE +V EKT+ Sbjct: 181 LHLMTKASMQVQMRQFNHIPLDTRKQNELGTLARVFTQMSTELGQLYSRLEEAVNEKTQK 240 Query: 240 LHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNV--GENWRISEGQ 297 L + R L LYQ +Q LNT+ I+ +L + ++ ++++ V E+W I+ G+ Sbjct: 241 LRQTNRTLSTLYQSAQLLNTNTINDKILNQVLNYIFISDHLNFVKVEVMGAEHWDITLGK 300 Query: 298 PNPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLL 357 + +QI +++ G L WQ ++ +++ ML R LYF++ + +QLL Sbjct: 301 QDANNELQIETLSVDNEELGVLSWQAGLPCPDPRIMQNLAQMLARALYFHKNLRQKEQLL 360 Query: 358 LMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQS----IMADFSQALNDAY 413 LMEER+ IARELHDSLAQVLS+L+IQLTLLK ++ +++ ++ I+A+F QAL+ Y Sbjct: 361 LMEERSIIARELHDSLAQVLSFLQIQLTLLKHNLKKEDEQSKEKSLAIIANFEQALSGGY 420 Query: 414 RQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQI 473 QLRELL TFRLT+Q+A+L AL++++D+L++QT+ ++ ++C+LP+ +L+ Q VH+LQI Sbjct: 421 AQLRELLATFRLTIQEANLQLALKQVIDSLRSQTTMQMNVNCQLPSQSLNPQQLVHVLQI 480 Query: 474 IREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAE 533 +REA NA+KH+ + I +S +G + + + D+G+GI +EPEGHYGLNIM ER Sbjct: 481 VREATTNAIKHSQGTVIEISARINAEGEYEILVEDDGVGIPNLEEPEGHYGLNIMAERCR 540 Query: 534 RLGGTLTFSQPSGGGTLVSISFRS 557 +L L + GGT V I+ Sbjct: 541 QLNAQLHIHRREQGGTQVKITLPH 564 >UniRef50_A5EZZ3 Nitrate/nitrite sensor protein NarQ n=51 Tax=Vibrionales RepID=A5EZZ3_VIBC3 Length = 583 Score = 518 bits (1334), Expect = e-145, Method: Composition-based stats. Identities = 242/566 (42%), Positives = 348/566 (61%), Gaps = 12/566 (2%) Query: 3 VKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQS 62 V+ ++ ++A+A I+ LS L+TG+A++TLASSL DAEA+N++GS+RMQSYRL YD+Q+ Sbjct: 14 VRHSLTRTMAKAMLLILFLSALTTGVAIVTLASSLNDAEAVNVSGSMRMQSYRLAYDIQT 73 Query: 63 GSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPWYQ 122 S AH LF+ +L+SP + L W VP ++ Y L W E+ L+ Y Sbjct: 74 QSHDYKAHIFLFENSLYSPSMLALLDWTVPSDIQQDYYQLIERWHELKKVLNSDQKAQYL 133 Query: 123 ANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQ 182 + +V+ +D FVL LQ ++ERK++ + A+ G GIF + F + IR QVV PLN Sbjct: 134 DQVAPFVSLVDGFVLKLQRFSERKLIALAAVGSFGLGGIFAVSLFVVYYIREQVVRPLNA 193 Query: 183 LVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHE 242 +V AS++I++ FD L+ E+G+L++TFN M+ +L KLYR LE +V EKT L Sbjct: 194 MVDASEKIKNRNFD-VMLEETSSTEMGILSRTFNSMAGDLGKLYRGLEHAVNEKTNKLQM 252 Query: 243 AKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLEL----NVGENWRISEGQP 298 A + L+VLY SQ L S+I F+ IL+ E L L G+ + EG+P Sbjct: 253 ANQSLQVLYHSSQELTASRITASNFQTILRHWVALEGICALRLEIEEEAGKPLILQEGKP 312 Query: 299 NPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLL 358 + + +Q P+T+ G L+W+ L+++ + +L R +Y+NQAQ+ +QLLL Sbjct: 313 SGAVMLQT-PLTLDGHHLGFLYWEAGSPEPDRALIDNFALILSRAIYYNQAQRQAEQLLL 371 Query: 359 MEERATIARELHDSLAQVLSYLRIQLTLLKRSI-----PEDNATAQSIMADFSQALNDAY 413 MEERATIARELHDSLAQ LSYL+IQLTLLKRS+ D + ++I+ + + L+DAY Sbjct: 372 MEERATIARELHDSLAQSLSYLKIQLTLLKRSVTPLKSDGDLSKTENIIREIDKGLSDAY 431 Query: 414 RQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQI 473 QLRELLTTFRLTL + +L ML L QT AK+ L+ L ++ALDA QVHL+Q+ Sbjct: 432 TQLRELLTTFRLTLTEGSFGQSLLGMLTQLSGQTDAKIELNNALSSIALDAHQQVHLVQL 491 Query: 474 IREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAE 533 IREA +NA+KHA A++I V+C G V I D+G+G HYG++IM+ERA Sbjct: 492 IREATINAIKHAKATKIKVNC-QEQQGRVQVTIEDDGVGFDLQDHKINHYGMSIMQERAA 550 Query: 534 RLGGTLTFSQPSGGGTLVSISFRSAE 559 RL G L G G V ++++ +E Sbjct: 551 RLRGELKVESAPGKGCKVVLTYQQSE 576 >UniRef50_Q2C653 Hypothetical nitrate/nitrite sensor protein NarQ n=2 Tax=Photobacterium RepID=Q2C653_9GAMM Length = 563 Score = 515 bits (1326), Expect = e-144, Method: Composition-based stats. Identities = 233/558 (41%), Positives = 342/558 (61%), Gaps = 9/558 (1%) Query: 5 RPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQSGS 64 ++ ++AR+ I+++SI++T +AL TL SS D EAINIAGSLRMQSYRL +D+++ S Sbjct: 8 HSLTTTIARSLVLILIISIVTTALALTTLVSSQNDVEAINIAGSLRMQSYRLAFDVETKS 67 Query: 65 PQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPWYQAN 124 P L+AH + F+ +L+S + L+ W + ++ Y H+ W +++ L + + + + Sbjct: 68 PLLSAHIEQFEHSLYSAPMKGLSYWLISSEIQQHYNHIVLRWEDLHPILERDNNTVFIQH 127 Query: 125 INNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLV 184 + +V++I+ FV LQ +E K+ + I + G IF +VF+T+R R Q+VAPLN LV Sbjct: 128 VAPFVHRINTFVAELQKSSELKLQRLAIIGVIGVSLIFLIVFYTIRYTRQQIVAPLNDLV 187 Query: 185 TASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAK 244 A ++++ F L+ N NELG+LA TF++MSS+L +LY+ LE SV EKT L A Sbjct: 188 DACKQVKRKNFRLDLLN-NSNNELGILAHTFSKMSSDLEQLYQGLERSVNEKTHRLRHAN 246 Query: 245 RRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAE----YLELNVGENWRISEGQPNP 300 L+VLY CSQ L+ S + F ++L+ + + +E G I GQ Sbjct: 247 ESLQVLYNCSQQLSVSHLTRVQFTNMLETMIAIDGLIGAKLIIEEPNGSTSNIKVGQQAG 306 Query: 301 ELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLME 360 + Q + + + G+L WQ S + L+N++S +L R +Y+N+AQK + LLLME Sbjct: 307 QH-WQYNELYIDGELMGQLWWQYSLPCPDKALINNISQILARAIYYNRAQKQAEYLLLME 365 Query: 361 ERATIARELHDSLAQVLSYLRIQLTLLKRSIPED--NATAQSIMADFSQALNDAYRQLRE 418 ERATIARELHDSLAQ LSYL+IQL LLKR + ++ N + D L++AY QLRE Sbjct: 366 ERATIARELHDSLAQSLSYLKIQLALLKRELNQNAQNENTHQAVYDIEAGLSNAYTQLRE 425 Query: 419 LLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAV 478 LL+TFRL ++ A+ AL +ML+ L+ QT A L +D ++ ++ALDA QVHLLQIIREAV Sbjct: 426 LLSTFRLAIKDANFGEALNQMLEPLEEQTDALLIIDNQISSMALDAHNQVHLLQIIREAV 485 Query: 479 LNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGT 538 LNA+KHA+A EI V+C + + V I D+G G HYGLNIM+ERA RL G Sbjct: 486 LNAIKHADADEITVNC-QQTEQHIQVTIIDDGKGFDIKDSKRDHYGLNIMQERASRLQGK 544 Query: 539 LTFSQPSGGGTLVSISFR 556 L G+ + + F Sbjct: 545 LKIQSGIDQGSAICLRFP 562 >UniRef50_A0KIL7 Nitrate/nitrite sensor histidine kinase NarQ n=2 Tax=Aeromonas RepID=A0KIL7_AERHH Length = 570 Score = 477 bits (1228), Expect = e-133, Method: Composition-based stats. Identities = 218/561 (38%), Positives = 317/561 (56%), Gaps = 10/561 (1%) Query: 5 RPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQSGS 64 VS+++ R+ I+ ++ L +A++TL S+ DA+AIN++GSLRMQ+YR+ Y+++ G Sbjct: 8 HSVSSAIGRSMVLILFMASLIAVVAMVTLFYSVPDAKAINLSGSLRMQAYRMAYEIEQGQ 67 Query: 65 PQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPWYQAN 124 L+ F+Q LH+ L W P +++ Y + W M + Y N Sbjct: 68 QVLS-RLDQFEQTLHAAELQETQRWITPASLRRTYGEVLQQWQVMREHIENATPRRYTDN 126 Query: 125 INNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLV 184 +V ID FV +Q++ E K+ ++ G + I T+ +FT+R R QVVAPLNQLV Sbjct: 127 TEQFVAAIDDFVNQMQYHVEFKVRMLALAEGLGLLSIITIAWFTVRFTRQQVVAPLNQLV 186 Query: 185 TASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAK 244 +++I+ +F+ NELG L+ F M+ EL KLYR LE+ VEEKT L +A Sbjct: 187 YCARQIQRQEFNLTLPP-YCENELGELSGAFVTMADELGKLYRELESKVEEKTAKLQQAN 245 Query: 245 RRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISE------GQP 298 L LY +Q L+ + + +L+ ++ +Y+ L E+ + + G P Sbjct: 246 DTLSFLYSTAQKLHAAPLSRRTLLKLLERAAAHQHIDYIRLTRFEHNAMPDYITGRKGWP 305 Query: 299 NPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLL 358 + + M E YG L +SH E L+ + S +L + L+ +Q Q+LLL Sbjct: 306 GDLDAVVSFYLQMDEQEYGRLDVISSH-PIDERLMKNFSMLLAQVLHKDQTLLQHQRLLL 364 Query: 359 MEERATIARELHDSLAQVLSYLRIQLTLLKRSIPE-DNATAQSIMADFSQALNDAYRQLR 417 MEERA IARELHDSLAQ LSYL+IQ TLLKR + D A++ M + L AY QLR Sbjct: 365 MEERAVIARELHDSLAQALSYLKIQSTLLKRFFAKGDTVKAEAAMQQIDEGLGSAYTQLR 424 Query: 418 ELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREA 477 ELL TFRL++ A+L A++ ML+ L+ QT A + L L L+A +H+LQ+IREA Sbjct: 425 ELLGTFRLSIGDANLGEAIKVMLEQLKPQTQADIRLHYGLADTDLEAGQHIHILQLIREA 484 Query: 478 VLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGG 537 VLNA+KHA+A I VSC T DGN V I D+G+GIG HYGL+IM ERA +L G Sbjct: 485 VLNAIKHASAQVIDVSCETLADGNIQVQISDDGVGIGIASSAVNHYGLSIMNERASKLHG 544 Query: 538 TLTFSQPSGGGTLVSISFRSA 558 LT S+ GT V ++F ++ Sbjct: 545 LLTISERPPRGTCVHLTFPTS 565 >UniRef50_B8EB80 Histidine kinase n=20 Tax=Shewanella RepID=B8EB80_SHEB2 Length = 611 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 194/550 (35%), Positives = 303/550 (55%), Gaps = 10/550 (1%) Query: 1 MIVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDL 60 ++ + +++ + ++LLS + A++ L+ SL DA+AIN +GSLRMQSYRL + Sbjct: 5 LMKRGSLTSKILGLMLVLILLSSSLSTFAIINLSYSLGDAKAINASGSLRMQSYRLMFYA 64 Query: 61 QSGSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPW 120 SGS F+ L+S L + W+ P + +Y + WL M + + + Sbjct: 65 NSGSDAAQDKITEFENTLYSDTLKPSDSWFSPRKIADQYQLVIDKWLVMKYYIEQENSRD 124 Query: 121 YQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPL 180 Y A++ ++V+ IDL VL ++H+A K+ L+ A + G + + F +R + +VV PL Sbjct: 125 YVASLKDFVDTIDLLVLEMEHHAAFKLRLLAASQILGLSVMLIIAFVAVRFTKKKVVIPL 184 Query: 181 NQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDL 240 +L+ ++ I G F+ +T EL L + + EL LY LE+ V EKT L Sbjct: 185 QKLMESANTISKGNFEIEMPETEYI-ELTALTHALQKTAKELAMLYGDLESQVAEKTLAL 243 Query: 241 HEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVG------ENWRIS 294 A L LY LN +++D + L ++ E+ +YL L + E Sbjct: 244 TRANNELAFLYDNLLTLNANKLDYKALKAALNQLKGYESLDYLRLIIQYPEQELEVIEAD 303 Query: 295 EGQPNPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQ 354 G P P+ ++ G L + + L N+ + ML R + + A + Q Sbjct: 304 GGWPEVTQNSTRFPLQFEQANLGYLELIADQ-TPNIALFNNFAIMLTRSIVIHNATEQRQ 362 Query: 355 QLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPE--DNATAQSIMADFSQALNDA 412 QL LMEER IARELHDSL QVLS+L+IQ++LL++++ N T ++ + + ++ ++ A Sbjct: 363 QLALMEERGVIARELHDSLGQVLSFLKIQISLLRKNLDHSCRNPTIEAQLTEINEGVSTA 422 Query: 413 YRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQ 472 Y QLRELL+TFRLT+++ DL SAL ML+ L+ +TS K+TLD +L L+A+ +H+LQ Sbjct: 423 YVQLRELLSTFRLTIKEPDLKSALEAMLEQLRTKTSIKITLDYKLAPQWLEAKQHIHILQ 482 Query: 473 IIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERA 532 I REA LNA+KHA AS I + C +G + + DNGIGIG KE + H+G+ IM ERA Sbjct: 483 ITREATLNAIKHAEASLINIHCYKDDEGMVNINVCDNGIGIGHLKERDQHFGIGIMHERA 542 Query: 533 ERLGGTLTFS 542 +L G + FS Sbjct: 543 SKLSGKVVFS 552 >UniRef50_A4VHY8 Two-component sensor NarX n=3 Tax=Pseudomonas RepID=A4VHY8_PSEU5 Length = 658 Score = 453 bits (1165), Expect = e-126, Method: Composition-based stats. Identities = 174/597 (29%), Positives = 270/597 (45%), Gaps = 40/597 (6%) Query: 1 MIVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDL 60 + + + + AF I+ S++S +L + DAEAIN AGSLRMQ+YRL + Sbjct: 28 LSTRHSIVFNTLVAFVVIIGFSLVSMLASLYLADALEGDAEAINQAGSLRMQAYRLAFTA 87 Query: 61 QSGS-PQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLP 119 + G L + ++ L S L + + + + + +W E L P Sbjct: 88 EHGPQALLEERIDILERTLRSASLRSALHRHGDTPLPGLHGGVLQHWQERMRPLLDAQPP 147 Query: 120 W---YQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQV 176 Y+ +V+++D+FV LQ +E K+ ++ A+ I + F + + + + Sbjct: 148 RLDDYRREAPEFVSELDVFVRTLQEASEGKLGVIRALQAGTLFIIVLIAFVLIYGLHNNL 207 Query: 177 VAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEK 236 PL L ++ I G F ++ EL LLA+T NQMS EL LY +E V++K Sbjct: 208 ATPLRSLTKMARDIGKGDFSGR-VEIPGDTELSLLARTLNQMSQELAGLYAEMEQKVDDK 266 Query: 237 TRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHIL--------------------QIVRD 276 T L + L++L+ ++ L + D L Sbjct: 267 TAALTRSNATLQLLFNSARMLYSQPDDPSLMMGSLLTKVQEVLDTGPISLCLNRSAEAGS 326 Query: 277 NEAAEYLELNVGENWRISEGQPNPELPMQILP---------VTMQETVYGELHWQ----N 323 + A +L + ++ + + P LP + + G L Sbjct: 327 HTAMTSSDLQPPDYCKLPQCEVCPVNQSGRLPSGEELVTFELRSGQDDLGSLRVAHPAGE 386 Query: 324 SHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQ 383 S LL +++ + L Q + +L LMEERA IARELHDSLAQ LS ++Q Sbjct: 387 PLESWQTLLLTTLADLFAASLSLAQLGQKQARLALMEERAVIARELHDSLAQALSAQKLQ 446 Query: 384 LTLLKRSIPEDNATAQ--SIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLD 441 L LKR + +++ AQ + + LN AYRQLRELLTTFR+ + + L AL+ ++ Sbjct: 447 LARLKRLMQKESGQAQLDDSVQQIDRGLNSAYRQLRELLTTFRIKVNEPGLKPALQATIE 506 Query: 442 TLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGN 501 + + D +L L +VH LQIIREA+ N +KHA A + G Sbjct: 507 EFGANSGLHIESDFQLDHCPLTPNEEVHCLQIIREALSNVVKHAEAEHCWLRLTQDGIGT 566 Query: 502 HTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSA 558 V I D+GIGI ++ GHYGL I+RERA L G+++ GGGT V + F A Sbjct: 567 INVEIEDDGIGIRPEEQRTGHYGLIILRERANSLNGSISIGLRPGGGTRVHLRFPPA 623 >UniRef50_B2CI54 Integral membrane sensor signal transduction histidine kinase n=1 Tax=Pantoea sp. MMB051 RepID=B2CI54_9ENTR Length = 515 Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats. Identities = 232/558 (41%), Positives = 322/558 (57%), Gaps = 55/558 (9%) Query: 2 IVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQ 61 + +R V+ SLARA F IVLL++ + ++LLTL++S RDAEA+N+AGSLRMQSYRL +D Sbjct: 12 MSERSVTRSLARALFAIVLLAVFCSFLSLLTLSASQRDAEALNMAGSLRMQSYRLAWDAS 71 Query: 62 SGSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPWY 121 + L A +Q+++ SP L L +VP++VK RY L A+W + L GD + Sbjct: 72 AHPAALAADIASYQRSVQSPALLALRHAWVPDSVKARYRELLASWQSLQPELQTGDSRRF 131 Query: 122 QANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLN 181 Q N++ YV QID FVLALQ +AE KM L V L I I Sbjct: 132 QQNVSLYVEQIDSFVLALQRWAELKMKLAVGACLLSFIAILL------------------ 173 Query: 182 QLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLH 241 LAK F +MS EL K Y LE +V+EKT L Sbjct: 174 -----------------------------LAKAFCRMSGELEKQYLWLEQAVKEKTAHLR 204 Query: 242 EAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPE 301 +A RRL++LYQCS+ L + L + +++E + L+ W++S GQ + Sbjct: 205 QANRRLKLLYQCSEILRGHD---KAYSRALALAKEHENLSAVALSAPPRWQLSVGQEDTA 261 Query: 302 LPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEE 361 L LP+ ++T+ G L WQ S +S L+ ++SML R L ++A++ + LLLMEE Sbjct: 262 LAWHSLPL--EQTIGGVLRWQAS--ASEPQLMKGLASMLARSLQLDEAEEKVRHLLLMEE 317 Query: 362 RATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLT 421 RATIARELHDSLAQ L YLRIQ+T LK + +++A A +I+++ AL +A RQLRELLT Sbjct: 318 RATIARELHDSLAQSLVYLRIQMTRLKGIVGKESAPA-AIVSEVDAALAEANRQLRELLT 376 Query: 422 TFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNA 481 TFRL+++ ADL +AL +++ L+ QT A + L L+A QVH+LQI+REA+LNA Sbjct: 377 TFRLSIEPADLATALAQVIAQLRPQTEAVIQLTGDTQPQHLNAHQQVHVLQIVREALLNA 436 Query: 482 MKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTF 541 ++HA ASEI V + + + DNG G +P E GHYGL IM+ERA+ LG TL Sbjct: 437 IRHAQASEIEVRVARPEEKLLQIEVNDNGQGFNQPGEKPGHYGLAIMQERAKSLGATLEI 496 Query: 542 SQPSGGGTLVSISFRSAE 559 Q GGT VS+ F + Sbjct: 497 GQTEYGGTRVSLRFAAES 514 >UniRef50_A6FC55 Hypothetical nitrate/nitrite sensor protein NarQ n=1 Tax=Moritella sp. PE36 RepID=A6FC55_9GAMM Length = 572 Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats. Identities = 199/559 (35%), Positives = 301/559 (53%), Gaps = 11/559 (1%) Query: 5 RPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQSGS 64 + + + R F I+ L+ + T I+L+ L+ SL DA +IN AG+LRMQSY++ Y+L Sbjct: 10 QSIIILIGRGMFSILALASMLTFISLVALSLSLSDASSINKAGALRMQSYQIAYNLSRDE 69 Query: 65 PQL--NAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPWYQ 122 +L H F Q+L ++ W + +K + + W + ++ L + + Sbjct: 70 SELMRQGHIDTFNQSLAHIKNNIVDNWDISSKLKQEFIIVETQWQKQSDILHSDNPEQFL 129 Query: 123 ANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQ 182 ++ +V++ID FV LQ+++E K+ ++ I G IF + T+R ++ QV+ PL Q Sbjct: 130 LYVDEFVSEIDTFVQNLQNHSEYKVKVITLIKGLGIGLIFAVCIITIRLMQVQVLKPLQQ 189 Query: 183 LVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHE 242 + AS RI G+FD D NE+G LA + M+++L++LY +LE V+ KT+ L E Sbjct: 190 IFAASNRIRKGEFD-VSFDFFYENEIGSLASNISHMANDLNQLYSTLEQQVDAKTKQLKE 248 Query: 243 AKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVG----ENWRISEGQP 298 AK ++ LY SQ L+ + ++ LQ V + + L + E ++ G Sbjct: 249 AKDKINFLYTTSQKLHVTHLNADMLEQTLQSVSELNGLSFYNLILTGSEVETIYLNAGAD 308 Query: 299 NPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLL 358 N E + L + ++E +G L + E L S ++ R + +Q+ Q+ LL Sbjct: 309 NGEQTID-LKLELEEQSFGTLTVLKREANDQEHL-RSYCRIISRAQHRSQSNLEAQRSLL 366 Query: 359 MEERATIARELHDSLAQVLSYLRIQLTLLKRSI--PEDNATAQSIMADFSQALNDAYRQL 416 MEERA IARELHDSLAQ LSYL+IQ+ LLKR + E T I+ + L +Y QL Sbjct: 367 MEERAVIARELHDSLAQALSYLKIQVALLKRHLKNQEVTPTTNEIVEEIDVNLRVSYTQL 426 Query: 417 RELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIRE 476 RELL TFRLTL A+L A+ ML L+ +T +K+ L L +H+LQIIRE Sbjct: 427 RELLNTFRLTLDDANLSEAISIMLAQLRQRTKSKIHLSYELEEHLFKPNQHIHILQIIRE 486 Query: 477 AVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLG 536 AVLN++KHAN++EI + C T +G V I D+G GI HYGL IM ERA +LG Sbjct: 487 AVLNSIKHANSNEIMIDCGTNKNGTIEVSISDDGDGIPADPTKSNHYGLTIMDERASKLG 546 Query: 537 GTLTFSQPSGGGTLVSISF 555 L GT V ++F Sbjct: 547 AKLEIKNNIIKGTSVLLTF 565 >UniRef50_A1U593 Integral membrane sensor signal transduction histidine kinase n=2 Tax=Marinobacter RepID=A1U593_MARAV Length = 618 Score = 437 bits (1123), Expect = e-121, Method: Composition-based stats. Identities = 174/605 (28%), Positives = 275/605 (45%), Gaps = 52/605 (8%) Query: 1 MIVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDL 60 M + P+ LA IVL +I+S L S +A AIN+AGSLRM +++L Sbjct: 1 MTSRSPLVNRLAVVIGAIVLTAIVSMATTLAVSNSIEGNATAINLAGSLRMGAFQLAARS 60 Query: 61 QSGSPQ-----LNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSK 115 + PQ LN + ++ L P + + +Y + +W + + Sbjct: 61 ATDDPQDSTGTLNQRIEAYEDRLRDPAIIRSIPRTDDHPLAEQYKTVEYSWANQLRQSLE 120 Query: 116 GDLPWY------QANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTL 169 P A + Y ++DL V L+ E ++ L+ I + + +V Sbjct: 121 SHQPGAPLSAEMIAAVEEYTGEVDLLVSMLERRTEARIDLLHLIQIISMVFSVLIVLALF 180 Query: 170 RRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSL 229 ++++++ PL +LV + + F + +EL L + F+QM+SEL Y L Sbjct: 181 LDLKNRILRPLRKLVGIATAVGEQDFSHKA-NLKGSDELAQLGQAFDQMTSELALTYYEL 239 Query: 230 EASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIV-------------RD 276 E+ +KT +L + L+V++ S+ L + +LQ + D Sbjct: 240 ESRARQKTEELEISHAALQVMHSASRGLFANHDLCSGAIPMLQDLEQLLGIGPIRLFLHD 299 Query: 277 NEAAEYLELNVGENWRISEGQPN-------------PELPMQ-------ILPVTMQETVY 316 E+AE +E + + E+P++ +LP+ + Sbjct: 300 KESAEPVEAITTATPKRPFYCRDHHCNACLVTPEVYDEMPLENNDGRRLLLPIRTPGQLL 359 Query: 317 GELHW----QNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDS 372 G L + +S LL +++ L ++ + QQL L EER IARELHDS Sbjct: 360 GTLEVWYPAEKGLPETSRRLLETLTDQLATAIFLEKQITEEQQLTLAEERTVIARELHDS 419 Query: 373 LAQVLSYLRIQLTLLKRSI--PEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQA 430 LAQ LSYL++Q+T L+R E I+ + S LN AYRQLRELL TFRL L Sbjct: 420 LAQSLSYLKMQVTRLRRLNIDGEQKPIHDDILDELSTGLNSAYRQLRELLATFRLKLDTP 479 Query: 431 DLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEI 490 DL +ALR+ +D + + + LP L ++H LQIIRE + NA+KHA+A++I Sbjct: 480 DLATALRKTIDEFSERLGKPVAFEYNLPPQTLSPNEEIHTLQIIREGLANAVKHADATDI 539 Query: 491 AVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTL 550 AV V I+DNG G+ +P HYGL IM++RA LGG + GG Sbjct: 540 AVKVVF-DSPQVRASIQDNGKGLPGGDQPVNHYGLIIMQDRARTLGGKVNVRNRDEGGVE 598 Query: 551 VSISF 555 V+++F Sbjct: 599 VALTF 603 >UniRef50_B7UUR7 Two-component sensor NarX n=7 Tax=Gammaproteobacteria RepID=B7UUR7_PSEA8 Length = 622 Score = 437 bits (1123), Expect = e-121, Method: Composition-based stats. Identities = 172/589 (29%), Positives = 277/589 (47%), Gaps = 42/589 (7%) Query: 2 IVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQ 61 I++R + +V L+++ ALL + +DA IN AGSLRM +YR+ + Sbjct: 26 ILRRSLVVRFGCYLTLLVSLALIGMFSALLFADYTHQDAAVINHAGSLRMLTYRVALE-- 83 Query: 62 SGSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPWY 121 P L + L ++ + L+ E RL LP Sbjct: 84 ---PSLEGRQALLGTLGERLDSGDIRRLLQRQDADDPIRQLHQELREGLARLDPRALPG- 139 Query: 122 QANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLN 181 +A ++ YV ID FV LQ AER+ L+ + +VF TL + + V+ PL Sbjct: 140 RAVLDAYVGDIDRFVGILQAKAERRSQLLSTVQGLCLFLSLLVVFVTLYDLSYHVIGPLR 199 Query: 182 QLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLH 241 +L + ++R+ G+ D+ + + +EL L + FNQM+ EL +Y LE VE+KTR L Sbjct: 200 ELTSTARRLGRGELDAR-VTYSGEDELAQLGERFNQMAGELKSIYGDLEERVEDKTRALS 258 Query: 242 EAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVR-------------------------- 275 ++ +RLE+LY ++ L + D + +L + Sbjct: 259 QSHQRLELLYASARRLGENPYDSRTLQPLLNQLEKVLDAGRVTLCLNKDGVERAYSSLTT 318 Query: 276 -DNEAAEYLELNVGENWRISEGQPNP---ELPMQILPVTMQETVYGELHWQNS---HVSS 328 + A L+ + G + P P+ + P+++ +GEL ++ + Sbjct: 319 TERPADFCLQGDCGSCREQASACDQPSSLAQPLLMQPLSIAGHRFGELFIESRSGRLENW 378 Query: 329 SEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLK 388 + L+ + + R + Q+ +L L ER TIARELHDSLAQ LSYL+IQ++ L Sbjct: 379 QQQLIETFCDNIARTFALSLQQEQESRLALFAERGTIARELHDSLAQSLSYLKIQVSRLG 438 Query: 389 RSIPEDN--ATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQ 446 + + + + + + LN AYRQLRELLTTFRL+L + L +AL + + Sbjct: 439 TLLKREAPAEKIEDTLDELREGLNGAYRQLRELLTTFRLSLDEPSLEAALGNAVAEFGER 498 Query: 447 TSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYI 506 + LD RL + L ++H+LQI+REA+ N ++H+ A V + DG ++ + Sbjct: 499 GEVTIELDNRLQHVPLSPNEEIHVLQIVREALSNVVRHSQAQRAWVRLSSQADGQVSIAV 558 Query: 507 RDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 D+G+G + GHYGL IM+ER + LG L F + GT V SF Sbjct: 559 EDDGVGFDPQQNRSGHYGLTIMQERGQTLGSQLRFEARAPHGTRVLFSF 607 >UniRef50_A4TJU9 Nitrate/nitrite sensor protein n=29 Tax=Enterobacteriaceae RepID=A4TJU9_YERPP Length = 593 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 180/587 (30%), Positives = 282/587 (48%), Gaps = 39/587 (6%) Query: 6 PVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQSGSP 65 P+ +A + +L + I+ S +A AIN AGSLRMQSYRL + S Sbjct: 7 PLVNQIALLMILLGMLGLAGMVISSWMAQSIQGNAHAINQAGSLRMQSYRLLSMIPLDSN 66 Query: 66 QLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLE-MNNRLSKGDLPW-YQA 123 +L+ L Q +L + E + +Y + W + + +L + P A Sbjct: 67 ELSYLVALEQDK----TSHDLQQALLREGLMGQYQQIERYWQDTLKPQLQQAKHPDEVAA 122 Query: 124 NINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQL 183 ++ ++V+Q+D VLA+ H E+++L V I L + +L+ + +R +++ P +L Sbjct: 123 SVADFVHQLDALVLAIDHKTEQRLLQVTLIPLVFSLLTLSLLLAMIYYLRRRLLRPWLKL 182 Query: 184 VTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEA 243 ++ + I G F +E+G+L N+MS EL +Y LE V KT DL + Sbjct: 183 ISMANAIGRGDFSQRYTLDYQRDEMGMLGTALNRMSQELSLIYGDLEQRVVNKTADLQQK 242 Query: 244 KRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELN----------------- 286 + L LY S+ L+T Q +++ ++ E +++ Sbjct: 243 NQVLAFLYHSSRQLHTHQPLSERLAPVIEQLQALTTLENVQICLYENHLYRDHVNHNADA 302 Query: 287 ---VGENWRISEGQPNPELP------MQILPVTMQETV--YGEL----HWQNSHVSSSEP 331 + +N S P P Q L ++ + + YG L N S + Sbjct: 303 EYLMPKNRPASLTISGPVRPISHPELWQSLSWSLSDKLGQYGLLLAKQPLDNPLNSDQQQ 362 Query: 332 LLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSI 391 L++ + L L KH QQLLLMEER+ IARELHDS+AQ LS L+IQ++ L+ Sbjct: 363 LVDMLVEQLTSTLALESQAKHQQQLLLMEERSAIARELHDSIAQSLSCLKIQISCLQMQT 422 Query: 392 PEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKL 451 P+ + ++ LN AYRQLRELLTTFRL L +A L +AL+ +++ + + Sbjct: 423 PDLPENSNLLIKQMRDELNIAYRQLRELLTTFRLKLNEATLEAALQALVNEFSERAGLSI 482 Query: 452 TLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGI 511 T +LP + +H++ I+REA+ N KHA ASE V+ V G+ + I DNG Sbjct: 483 TFKYQLPPDQVPNHQAIHMVNIVREALNNIYKHARASEATVN-VHLEQGDVVMSITDNGC 541 Query: 512 GIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSA 558 GIG+ E HYGL IM++RA L G + +Q GGGT V + F Sbjct: 542 GIGQASEQPNHYGLMIMQDRANSLHGHCSINQKEGGGTEVRVQFTPE 588 >UniRef50_Q0A9X9 Signal transduction histidine kinase, nitrate/nitrite-specific, NarQ n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A9X9_ALHEH Length = 644 Score = 433 bits (1114), Expect = e-120, Method: Composition-based stats. Identities = 177/601 (29%), Positives = 282/601 (46%), Gaps = 49/601 (8%) Query: 7 VSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDL------ 60 ++ SL + + L ++ DA AIN+AGSLRMQSYR+ L Sbjct: 15 LAGSLFALLVGVATIGFLGMLHGAFVAKTAQHDAAAINVAGSLRMQSYRIATTLLDDQGP 74 Query: 61 QSGSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWL-EMNNRL----SK 115 Q+G+ L+A F++ LHSP L + V+ + ++ W E+ L S Sbjct: 75 QAGAKTLDAEVAAFERRLHSPELLRPIPANPDDPVREAWEEVHRQWTTELKPLLVDGSSA 134 Query: 116 GDLPWYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQ 175 G Y ++ +V +D V A Q AE ++ ++ + + LV + L R+ + Sbjct: 135 GSPVRYLDQVDRFVGTVDNLVTAAQSAAEARIHNSQSVRVLAMALLSGLVLYGLYRLHMR 194 Query: 176 VVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEE 235 +V P+ QL + R+ G F++ +ELG+ A+TFN+M+ L + RSL V E Sbjct: 195 LVLPVQQLNYVAGRLMKGDFEARARYLP-NDELGMYARTFNRMADTLTDMQRSLAHRVSE 253 Query: 236 KTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELN--------- 286 KT +L LE++Y S+ L+ ++ + +L + L + Sbjct: 254 KTAELRRRNSALELVYNASRDLSAGALESSNLKAMLDTLERVTGLGPLSICLAQPGADKS 313 Query: 287 ------VGENWRISEGQPNPELPMQI---------------LPVTMQETVYGELHWQ--- 322 E+ P+ + M + LP+ + YG L + Sbjct: 314 FETLSTSAESRPARCSAPDCKGCMNVVPRHGGGVVCPGMLALPLEDRNVRYGLLQVEYTP 373 Query: 323 -NSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLR 381 + L +V+S + + +++LMEERA IARELHDSLAQ LSY++ Sbjct: 374 GDQPRGWQLHLAETVASHIAAACARERELDAEHRIVLMEERAVIARELHDSLAQALSYMK 433 Query: 382 IQLTLLKRSIPED--NATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREM 439 IQ+ L+ + ++ A ++I+++ LN AY QLRELLTTFRL + L SALR+ Sbjct: 434 IQVARLQGLMRKEHEPAQLEAILSELRDGLNSAYEQLRELLTTFRLGMDSPGLESALRKA 493 Query: 440 LDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPD 499 + + + LD RL L+A ++HLLQI REA+ N ++H+ A+ V + Sbjct: 494 VKEFSERGDIPIRLDYRLSHWPLNANEEIHLLQIAREALANVVRHSQATRADVVVAPGSN 553 Query: 500 GNHTVYIRDNGIGIGEPKEPEG-HYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSA 558 + + + DNG+G+ E G HYG IM+ERAE LGG L +GGG V ++FR Sbjct: 554 HDVVLEVLDNGVGLAAVSEEPGHHYGTAIMQERAEGLGGMLRLGNRAGGGMRVMLTFRPE 613 Query: 559 E 559 Sbjct: 614 S 614 >UniRef50_C7RBW7 Histidine kinase n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RBW7_KANKD Length = 584 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 177/575 (30%), Positives = 278/575 (48%), Gaps = 36/575 (6%) Query: 15 FFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQSGSPQLN------ 68 IV L++ S ++ S DA IN+AGSLRMQS RL L + L+ Sbjct: 1 MAIIVALALASLITSMFVSESLDGDAAQINVAGSLRMQSIRLSRALTAEQNNLDILNATT 60 Query: 69 --AHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPWYQ--AN 124 + F++ L + L + + + L W E+ +++ + + Sbjct: 61 ATDEIREFERRLSILLSHGLIANSGNQKIVDIHKVLEQQWFEIKTQVNTNPARFETDYSL 120 Query: 125 INNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLV 184 I+ +V ID V LQ +E+K+ ++ I + F L RI +V P+N LV Sbjct: 121 IDQFVGTIDRLVSILQSESEKKIRVLRMIQGSALFLTLLTAFIALYRINRSIVQPMNNLV 180 Query: 185 TASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAK 244 A++ G F+ D + +E+GLL TFN+MS+ L ++ LE V+EKT L + Sbjct: 181 AAAKEASKGNFNVRVSDIS-NDEIGLLGTTFNEMSTRLQIIHNHLEEKVQEKTTKLERSN 239 Query: 245 RRLEVLYQCSQAL---NTSQIDVHCFRHILQIVRDNEAAEYLELNV-GENWRISEGQPN- 299 + LE+LYQ S L N+ + + + Q + D + L+ V + RI Q Sbjct: 240 KSLELLYQTSHNLVRANSRRDFENLLAQVEQTIGDGQVILCLDQKVQNSHQRIPISQHEL 299 Query: 300 PELPMQI--------------LPVTMQETVYGELHWQNSHVSSSE---PLLNSVSSMLGR 342 P+ QI + Q+ YG L + ++ + LL +++ + Sbjct: 300 PKNCDQIHCSQCKISNNIRHSFHIHKQDKDYGSLQYFSNKGKPEQWVHNLLQAIADNIAV 359 Query: 343 GLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNAT--AQS 400 + +Q + LLLMEERA IARELHDSLAQ LS+L++Q +LL R + ++ ++ Sbjct: 360 AISLDQKRAQENLLLLMEERAVIARELHDSLAQSLSFLKLQTSLLSRQLDKNLERNTIEN 419 Query: 401 IMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTL 460 + D LN+AYRQLRELLTTFRL +++ L SAL+ + + ++ LD + Sbjct: 420 TIGDLKDGLNNAYRQLRELLTTFRLQIEEPSLESALKGTVAEFSTKCGYEVELDYSITNQ 479 Query: 461 ALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPE 520 L + Q+H LQIIREA+ N +H+ AS+ V + G V + DNGIGI + Sbjct: 480 TLTSNQQIHALQIIREALSNVQRHSQASKAWVKL-SIQGGKVHVEVIDNGIGIPDEMPEG 538 Query: 521 GHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 HYGL+IM ERA L + + GT+V ++ Sbjct: 539 THYGLSIMNERAASLNANIDIRKAPPQGTIVEMTL 573 >UniRef50_B4TXT2 Nitrate/nitrite sensor protein NarX n=69 Tax=Enterobacteriaceae RepID=B4TXT2_SALSV Length = 598 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 157/579 (27%), Positives = 265/579 (45%), Gaps = 36/579 (6%) Query: 7 VSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQSGSPQ 66 + LA + + ++ + A AIN AGSLRMQSYRL + P Sbjct: 11 LVNQLALIVMLSTAIGVAGMAVSGWLVQGVQGSAHAINKAGSLRMQSYRLL----AAVPL 66 Query: 67 LNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWL-EMNNRLS-KGDLPWYQAN 124 ++L + + L + + + L W E++ L + + Sbjct: 67 DAKDQKLLDEMEQTAFSPELTRAAERDGQQKQLKALQDYWHNELSPGLQHAQNAHAVAED 126 Query: 125 INNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLV 184 + +V +D V + H E ++ VV + I + L+ FT+ +R +++ P QL+ Sbjct: 127 VTRFVAGLDRLVTSFDHTTELRIERVVLVHRVMAIFMALLLVFTIIWLRVRLLQPWKQLL 186 Query: 185 TASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAK 244 + ++ + F + + NE+ L N MS EL + Y LE V+EKT L Sbjct: 187 SMARAVSQRDFTQRA-NISGRNEMAALGSALNNMSEELAESYAVLEQRVQEKTAGLEHKN 245 Query: 245 RRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGE----------NWRIS 294 + L L+Q ++ L++ +L +++ +EL V + + Sbjct: 246 QILSFLWQANRRLHSPAPLCERLSPVLNGLQNLTQLHDIELRVYDLEDEDNHQEFTCQSD 305 Query: 295 EGQPNPEL---PMQILP-----------VTMQETVYG----ELHWQNSHVSSSEPLLNSV 336 + P LP +T T YG L + + L++++ Sbjct: 306 ISCDDKGCHLCPRSALPMINGGTTLKWRLTDSHTQYGILLATLPYGRHLSHDQQQLVDTL 365 Query: 337 SSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNA 396 L L ++ Q+ QQL++MEERATIARELHDS+AQ LS +++Q++ L+ Sbjct: 366 VEQLTATLALDRHQERQQQLIVMEERATIARELHDSIAQSLSCMKMQVSCLQMQGDVLPE 425 Query: 397 TAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCR 456 +++ +++ LN ++ QLRELLTTFRL L + L AL + + LD + Sbjct: 426 SSRVLLSQIRNELNCSWAQLRELLTTFRLQLTEPGLRPALEASCQEFSARFGFTVKLDYQ 485 Query: 457 LPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEP 516 LP + + +HLLQI REA+ NA+KH++A ++ V+ VT + ++DNG G+ E Sbjct: 486 LPPRLVPSHQAIHLLQIAREALSNALKHSHADDVVVT-VTQCGKQVKLKVQDNGCGVPEN 544 Query: 517 KEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 E HYG+ IMR+RA+ L G + GGT V+++F Sbjct: 545 AERSNHYGMIIMRDRAQSLRGDCQVRRRETGGTEVTVTF 583 >UniRef50_P0AFA3 Nitrate/nitrite sensor protein narX n=127 Tax=Gammaproteobacteria RepID=NARX_ECO57 Length = 598 Score = 428 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 161/579 (27%), Positives = 269/579 (46%), Gaps = 36/579 (6%) Query: 7 VSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQSGSPQ 66 + +A + + ++ + A AIN AGSLRMQSYRL + P Sbjct: 11 LVNQVALIVLLSTAIGLAGMAVSGWLVQGVQGSAHAINKAGSLRMQSYRLL----AAVPL 66 Query: 67 LNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLE--MNNRLSKGDLPWYQAN 124 + L ++ + L + + L W + + + A+ Sbjct: 67 SEKDKPLIKEMEQTAFSAELTRAAERDGQLAQLQGLQDYWRNELIPALMRAQNRETVSAD 126 Query: 125 INNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLV 184 ++ +V +D V E ++ VV + + + L+ FT+ +R +++ P QL+ Sbjct: 127 VSQFVAGLDQLVSGFDRTTEMRIETVVLVHRVMAVFMALLLVFTIIWLRARLLQPWRQLL 186 Query: 185 TASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAK 244 + + H F + + NE+ +L N MS+EL + Y LE V+EKT L Sbjct: 187 AMASAVSHRDFTQRA-NISGRNEMAMLGTALNNMSAELAESYAVLEQRVQEKTAGLEHKN 245 Query: 245 RRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLEL-----NVGENWRISEGQPN 299 + L L+Q ++ L++ +L +++ +EL + EN + QP+ Sbjct: 246 QILSFLWQANRRLHSRAPLCERLSPVLNGLQNLTLLRDIELRVYDTDDEENHQEFTCQPD 305 Query: 300 PEL--------PMQILPVTMQETV-----------YGELHW---QNSHVS-SSEPLLNSV 336 P +LPV + T YG L Q H+S + L++++ Sbjct: 306 MTCDDKGCQLCPRGVLPVGDRGTTLKWRLADSHTQYGILLATLPQGRHLSHDQQQLVDTL 365 Query: 337 SSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNA 396 L L ++ Q+ QQL++MEERATIARELHDS+AQ LS +++Q++ L+ Sbjct: 366 VEQLTATLALDRHQERQQQLIVMEERATIARELHDSIAQSLSCMKMQVSCLQMQGDALPE 425 Query: 397 TAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCR 456 +++ +++ LN ++ QLRELLTTFRL L + L AL + + + LD + Sbjct: 426 SSRELLSQIRNELNASWAQLRELLTTFRLQLTEPGLRPALEASCEEYSAKFGFPVKLDYQ 485 Query: 457 LPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEP 516 LP + + +HLLQI REA+ NA+KH+ ASE+ V+ V D + ++DNG G+ E Sbjct: 486 LPPRLVPSHQAIHLLQIAREALSNALKHSQASEVVVT-VAQNDNQVKLTVQDNGCGVPEN 544 Query: 517 KEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 HYG+ IMR+RA+ L G + GGT V ++F Sbjct: 545 AIRSNHYGMIIMRDRAQSLRGDCRVRRRESGGTEVVVTF 583 >UniRef50_Q2SF45 Signal transduction histidine kinase, nitrate/nitrite-specific n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SF45_HAHCH Length = 620 Score = 428 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 180/605 (29%), Positives = 283/605 (46%), Gaps = 51/605 (8%) Query: 4 KRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQS- 62 ++ + + +V L++++ + S+ +DAEA+NIAGSLRMQSYR+ L + Sbjct: 6 QKSLIFRMGALMIAMVSLAMITMLASFFISESAEKDAEAVNIAGSLRMQSYRMQARLLTL 65 Query: 63 ---GSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLE-----MNNRLS 114 S + A + F + + +PVL + + ++ + +W + Sbjct: 66 DTPPSDFVAALTRQFAERIENPVLVAEAMKDDSSELHRQFMQVRESWENDVSGFIATYAH 125 Query: 115 KGDLPWYQA---NINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRR 171 D I+ +V++ID V Q AE ++ + I ++ F LV F+L Sbjct: 126 NPDRRVADQLGEKIDKFVDEIDNLVQLYQIRAEDRIENLRLIQISALFLTFALVSFSLLI 185 Query: 172 IRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEA 231 + H V PL L +++I G F L+ +ELGLLA+TFNQMS L ++Y SLE Sbjct: 186 LHHHVELPLRSLTQNARKIARGDFSDR-LEVKNDDELGLLAETFNQMSDALSEMYESLET 244 Query: 232 SVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNV---- 287 V+ KT+ L + L LY ++ ++ + F+ L+ + A +EL + Sbjct: 245 RVKNKTQALKRSNDSLNFLYHLAREVSEKTHENIDFQAWLEELTSITAVGGVELCLKTPE 304 Query: 288 ----------------GENWRISEGQPNPELPMQIL----------PVTMQETVYGELHW 321 + + E + Q+ P+ + YG + Sbjct: 305 AVIPYEHIRNDYMTELPSSCQRQECEKCMVEKAQVCRDNDEVQVRYPLIKEGVQYGVIVC 364 Query: 322 ----QNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVL 377 S LL S S + L +++ LM ER IARELHDSLAQ L Sbjct: 365 TLRNSQYLESWQHQLLQSFSDQVAVALSLKNQGDQERRVSLMNERNVIARELHDSLAQSL 424 Query: 378 SYLRIQLTLLKRSIPE---DNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPS 434 SYL+IQ+ L R++ ++ I A+ + + AYRQLRELLTTFRL++ + L + Sbjct: 425 SYLKIQVARLTRALQSKQVEDEQIDGITAELKEGITSAYRQLRELLTTFRLSISEKGLHA 484 Query: 435 ALREMLDTLQNQ-TSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVS 493 A+ ++ L Q T+ K+ LD R+ + ++HLLQI REA+ NA++H+ + + VS Sbjct: 485 AILHTVEQLTEQSTNVKIVLDYRVEDIPFSPNEEIHLLQITREALQNAVRHSQGNLVTVS 544 Query: 494 CVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSI 553 + P T+ I DNG+GI E E HYGL IMRER L G L + GGT V Sbjct: 545 LHSDPKKKVTLAIIDNGVGIPEDPEKLNHYGLAIMRERTRNLHGELAIQRIPEGGTAVLF 604 Query: 554 SFRSA 558 SF + Sbjct: 605 SFTPS 609 >UniRef50_B4EWG1 Nitrate/nitrite teo-component system, sensor kinase n=8 Tax=Enterobacteriaceae RepID=B4EWG1_PROMH Length = 609 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 177/588 (30%), Positives = 272/588 (46%), Gaps = 41/588 (6%) Query: 4 KRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQSG 63 + + +A L ++ I+ + S +A AIN +GSLRMQSYRL L Sbjct: 11 RFSIINQIAILMLLFTLFGVVGMAISNHIILSVQGNAHAINKSGSLRMQSYRLLSAL--- 67 Query: 64 SPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLE-MNNRLSKGDLP-WY 121 P + HR Q+ + L +++++Y L W E + LS P Sbjct: 68 -PLDDKHRDYLQELENDLDSKELRQVLSTSSLQSQYVQLTHYWKETLKPTLSAAKQPNDA 126 Query: 122 QANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLN 181 + + +V+Q+D V ++ E+K+ LV L L+F ++ R +++ P Sbjct: 127 KQEVIFFVSQLDTLVSSIDQLTEQKIRLVAYTQLIFTALTLLLLFGSVWHFRRRLLLPWQ 186 Query: 182 QLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLH 241 QL++ + I HG F + +E+ L N MS EL LY LE V EKT DL Sbjct: 187 QLMSMANSIGHGDFSTRFRPRPHHDEIATLGIALNTMSEELSTLYSELEQRVIEKTHDLQ 246 Query: 242 EAKRRLEVLYQCSQALNTSQIDVHCFRHIL--------------QIVRDNEAAEYLELNV 287 + + L LY SQ L++ R IL ++ DN+ + E+++ Sbjct: 247 QKNKVLSYLYHSSQQLHSQAPLCARLRQILAELQHIIPDSYLQIRLYEDNQHTLFNEISL 306 Query: 288 GENWRISEGQPNPEL---------------PMQILPVTMQETVYGELHWQNSH----VSS 328 + R E P P+ + +T Q YG Q Sbjct: 307 APSSR-PEYCPTPDCERCNEDANITTPLNNRLLHWELTDQIHRYGLFVMQLPENSVLTDE 365 Query: 329 SEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLK 388 L+ ++ + L Q + QQLLLM+ER+ IARELHDS+AQ LS L++Q++ L+ Sbjct: 366 QNNLMLLLTKQISAMLAMEQQNEQQQQLLLMDERSAIARELHDSIAQSLSCLKMQVSYLQ 425 Query: 389 RSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTS 448 Q ++ + + LN AYRQLRELLTTFRL L + L +AL L+ + Sbjct: 426 MQSETLPDNCQKLLKEMREELNVAYRQLRELLTTFRLKLTEPGLLAALENTLNEFNQRLG 485 Query: 449 AKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRD 508 + D +LP +++ +H++QI+REA+ N ++HANA+ V+ T +G + I D Sbjct: 486 FAIHFDYQLPAKCVNSHQSIHVVQIVREALNNILQHANANWAEVAL-TLNNGIVELQIND 544 Query: 509 NGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFR 556 NG GI E HYGL IMRERA L G+ + GGT V ++F Sbjct: 545 NGEGITPNPEKINHYGLIIMRERANSLNGSYSIRVRKEGGTQVFVTFP 592 >UniRef50_Q5QWJ9 Nitrate/nitrite sensor histidine kinase n=1 Tax=Idiomarina loihiensis RepID=Q5QWJ9_IDILO Length = 598 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 173/594 (29%), Positives = 284/594 (47%), Gaps = 38/594 (6%) Query: 1 MIVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDL 60 MI + + IV+++ S+ A L S +DAE IN+AGS RM++Y+ L Sbjct: 1 MIRNASIINVFRVSLALIVIVASASSLSAFWLLEKSEQDAELINVAGSHRMKAYKFALQL 60 Query: 61 QSGSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPW 120 SG + L L + + +++ W +++ +++ D Sbjct: 61 SSGKKVQASETAQEIDTLWEQPLLHRHFVKAGGSIQQLAKDARTEWQRVHSEIAEQDFAR 120 Query: 121 YQAN----INNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQV 176 + I+NYVNQ+D V LQ ++ER+M V + I + FF L ++ ++ Sbjct: 121 FSQQQSNAIDNYVNQLDTLVGQLQEHSERRMETVRSSLALASFFIVAIFFFLLTVLKRKI 180 Query: 177 VAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEK 236 PL L+ S+R+ G F + + +E+G L++T N+MS + Y LE VE++ Sbjct: 181 NQPLRHLLAVSKRLGQGDFTAKS-KIDNEDEIGQLSRTMNKMSETVSYFYGGLERRVEQQ 239 Query: 237 TRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHI--------------LQIVRDNEAAEY 282 T++L + L LY ++++ D + ++ + L ++ + + Sbjct: 240 TQELSRKNKVLSFLYDTARSIIVHSYDYNNYQQVIEKLYEIGEVNDIELCLLTEEGNRPF 299 Query: 283 LELNVGENWRISEGQPNPELPMQILP--------------VTMQETVYGELHWQ----NS 324 L+L + + ++ P + ++ YG L + Sbjct: 300 LQLQPRPSSHEPCEAGDCATCLKAGPGASVIEDKLVYRFVLKREDQNYGVLIVRCEQGQP 359 Query: 325 HVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQL 384 + + L++S + L ++ ++L LM ER IARELHDSLAQ LSYL+IQ+ Sbjct: 360 LATWQQQLMSSTADQLALSQSLKSEEEQVRRLALMHERTVIARELHDSLAQALSYLKIQV 419 Query: 385 TLLKRSIPE-DNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTL 443 T L + I + D AT + + + LN AYRQLRELLTTFRL + + L SAL+ + L Sbjct: 420 TRLHKGIEKNDRATIDDVSNELREGLNSAYRQLRELLTTFRLKVDGSGLYSALQTTVKQL 479 Query: 444 QNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHT 503 Q++ + LD RL + L ++HLLQIIREA NA+ H+ SE+ +S + Sbjct: 480 TEQSNMVVHLDYRLNNIPLVPHEEIHLLQIIREASQNAVNHSQGSEVHISLSQPSGQDVE 539 Query: 504 VYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRS 557 + I D+GIG+ E E HYGL IM+ER+ LGG + S+ GGT V +F Sbjct: 540 LKITDDGIGLPENAEKVNHYGLAIMQERSRNLGGEIKISRLESGGTEVCFTFTP 593 >UniRef50_Q9F0Y0 Nitrate/nitrite sensor protein n=1 Tax=Pseudomonas fluorescens RepID=Q9F0Y0_PSEFL Length = 599 Score = 427 bits (1098), Expect = e-118, Method: Composition-based stats. Identities = 174/587 (29%), Positives = 288/587 (49%), Gaps = 34/587 (5%) Query: 3 VKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQS 62 ++ + A A I +L++ S+ A L S DA AIN AGS+RM++Y L + L + Sbjct: 5 LRSSLPARAGLAVILIAILALASSLSAGLIAWFSQGDAAAINTAGSVRMETYHLSWKLAA 64 Query: 63 GS-PQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLE-MNNRLSKGDLPW 120 G+ + A QQ L SP L + ++ Y L W + + + +GD + Sbjct: 65 GANDDIPAIIASLQQRLDSPALRAVLEDGPETSLHKSYRDLMQRWNQTLRPAIERGDSAF 124 Query: 121 YQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPL 180 +Q++ +++V Q+D FV LQ +E K AI ++ L +++ VV PL Sbjct: 125 FQSSASSFVEQLDQFVTLLQRQSEHKQGWQQAIQGIALFSTMIILLIGLYELQYGVVTPL 184 Query: 181 NQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDL 240 +LV A+QR G+F ++ +ELG LA +FN M+ + + +R+LEA V++KT +L Sbjct: 185 QELVDATQRFRRGEF-QVRVNHQSEDELGQLATSFNTMAETIEQSHRTLEAQVQQKTLNL 243 Query: 241 HEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELN-------------- 286 +A LE+LYQ S++L T Q + +++ + L L Sbjct: 244 QQANAALELLYQSSRSLATRQANAEGLDELIRRFQQRLPGLRLTLCLQGQLQAPAKHLLA 303 Query: 287 ---------VGENWRISEGQPNPELPMQILPVTMQETVYGEL--HWQNSHV--SSSEPLL 333 + S + N P Q ++ Q T GEL H+ + H L+ Sbjct: 304 LHGAASRQVCASSDCASCHKHNAARP-QAFSISNQGTELGELKAHFVDGHAAQPWETALI 362 Query: 334 NSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPE 393 ++++++G L + ++ +LLL++ER IARELHDSLAQ LSY+++Q++ ++ + Sbjct: 363 QALANLIGTSLSLKRQREQDHRLLLLDERTIIARELHDSLAQALSYMKLQVSRMQTLMRR 422 Query: 394 DNA--TAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKL 451 T +++ + + LN+AYRQLRELLTTFRL ++ L L++ + N+ ++ Sbjct: 423 GEPVQTLETVTGELREGLNNAYRQLRELLTTFRLQIRDDGLVQELKDTAEEFSNRGDFQV 482 Query: 452 TLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGI 511 L L A Q+H+LQI REA+ N ++HA+A + + + I D+G Sbjct: 483 HLFIDTLAFELSASEQIHILQITREALSNCLRHAHAENAWLELRQEGE-TVRLSIEDDGR 541 Query: 512 GIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSA 558 G + H+GLNIM ERA L G L GT + F+ Sbjct: 542 GFSGEVDQCEHHGLNIMNERARSLHGQLQIHSRPPHGTRIQAHFQPE 588 >UniRef50_Q3SJ17 Periplasmic Sensor Signal Transduction Histidine Kinase n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SJ17_THIDA Length = 644 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 172/617 (27%), Positives = 280/617 (45%), Gaps = 58/617 (9%) Query: 3 VKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGY---D 59 ++ + L F I +L++ S + + + EAIN+AGSLRMQS+R+ Sbjct: 21 LENSLLMRLGGMFVAITVLAVTSMSTSWMVAETIQGSGEAINLAGSLRMQSWRMAAIYQR 80 Query: 60 LQSGSPQLNAH-----RQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANW-------L 107 LQS +A F+ L + + + + Y + +W L Sbjct: 81 LQSDGATEDAEDLGEAIARFEADLKAAPILAVLPSDETTPLWHVYRQVENDWRTVVKPGL 140 Query: 108 EMNNRLSKGDLPWYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFF 167 ++ + +I +V I+ V ++ AE K+L++ I A I +V Sbjct: 141 QVTPAAGRPARGSVLDDIPAFVAHINDLVKQIEDAAEAKILVMRVILGAAVIATMLVVAL 200 Query: 168 TLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYR 227 + + + +V PL L+ + +I G + D +E+G L + FN M+ +L LY+ Sbjct: 201 AIYLVNNILVYPLRGLLGLADQIGQGNL-AVRNDLTGEDEIGRLGQAFNHMAEDLSMLYQ 259 Query: 228 SLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVR------------ 275 +LEA VEEKT +L A R LE+LY L I + +L+ + Sbjct: 260 NLEARVEEKTAELTIANRSLELLYHSIARLYNGPIAPRTYEILLKDLENVLGLGHGLACL 319 Query: 276 -DNEAAEYLELNVGENWRISEGQP---------------------NPELPMQILPVTMQE 313 + + A + + EG + LP+ E Sbjct: 320 VEGDGATRGRVIASTLPPLPEGADPCSVMSCAECLARPALAVHPLGDGRRVLSLPLNDTE 379 Query: 314 TVYGELHWQ----NSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIAREL 369 +YG L + V LL ++S +G + + + ++L L++ERA +AR+L Sbjct: 380 QLYGVLQLEMPPGKELVQWQSQLLEALSRHIGIAIGTARRTEQSRRLSLLDERAALARDL 439 Query: 370 HDSLAQVLSYLRIQLTLLKRSIPEDNA--TAQSIMADFSQALNDAYRQLRELLTTFRLTL 427 HDSLAQ L+Y++IQ++ LK + A A ++A+ + LN AYRQLRELLTTFRL + Sbjct: 440 HDSLAQSLAYMKIQVSRLKPLVEGSGAGSEAGDVLAELREGLNSAYRQLRELLTTFRLRI 499 Query: 428 QQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANA 487 + L +AL+ + N+ +TL L L ++H LQI+REA+ N + HA A Sbjct: 500 EGEGLGAALQTTVTEFSNRGGIPITLVVHLAGCKLTPNEEIHALQIVREALSNVLNHAQA 559 Query: 488 SEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGG 547 + VS DG+ + + D+GIGI HYG+ IM ERA+ LGG L+ + Sbjct: 560 RQAEVSVSCNSDGSVSATVTDDGIGIHGTARAH-HYGMTIMEERAKNLGGRLSVENLAAR 618 Query: 548 GTLVSISF-RSAEGEES 563 GT V++ F S E++ Sbjct: 619 GTRVALHFVPSTRREDN 635 >UniRef50_A8FUN8 Two-component sensor NarX n=3 Tax=Shewanella RepID=A8FUN8_SHESH Length = 591 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 168/568 (29%), Positives = 275/568 (48%), Gaps = 23/568 (4%) Query: 5 RPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLG----YDL 60 + AS + I+ L + S ++L S DAE IN AGS+RMQ+ R+ D Sbjct: 28 SSLVASAGQFMAIIITLGLFSMISSILVAESLSGDAERINRAGSMRMQAIRVSRANLIDQ 87 Query: 61 QSGSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPW 120 P L+ Q+F+ L + V ++ + ++W + + + Sbjct: 88 DGSRPILSQEIQVFENKLSHLFFGGIASTIDDPEVIAQHQKILSSW----DAIKQSPQTT 143 Query: 121 YQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPL 180 + + + +ID V LQ +E+K+ L+ I I + L ++ ++ PL Sbjct: 144 SVEDFDRFTIKIDKLVNLLQMESEKKLSLLRLIQGITLFSILIVSALVLFKLNRSLIIPL 203 Query: 181 NQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDL 240 QLV + G F+ +D NELGLL++T MS +L Y+ E V++KT++L Sbjct: 204 KQLVRVASEAGKGNFN-IKVDHIADNELGLLSRTIAHMSKQLENTYQEFEDRVDKKTQEL 262 Query: 241 HEAKRRLEVLYQCSQALNT---SQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQ 297 ++ + LEVLY+ + L+ QID + ++Q++ + + L N + + Sbjct: 263 TQSNQSLEVLYRAASNLSNYEYHQIDQKIIQELVQVLGYGKVSIVLCEKSINNLTFYKAK 322 Query: 298 PNP----ELPMQILPVTMQETVYGELHWQNS----HVSSSEPLLNSVSSMLGRGLYFNQA 349 N + + + + +G++ WQ + LL +++ ++ + Q Sbjct: 323 TNTIDHQYMDVHQFVLEKRGRFFGDIVWQVPKHETPEDWQKQLLQAMADIVATAIELEQK 382 Query: 350 QKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQ--SIMADFSQ 407 + +LL+ EERA IARELHDSLAQ LS+L++Q++LL R + + Q + D Q Sbjct: 383 KNTENRLLIAEERAVIARELHDSLAQSLSFLKVQMSLLTRKMQKGLPEEQVNETINDIKQ 442 Query: 408 ALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQ 467 LN AY QLRELLTTFRL L L +AL+ + + + L+ +P L A + Sbjct: 443 GLNHAYLQLRELLTTFRLKLDDPSLENALQGTVAEFAEKCQHAIELNFEIPQNYLTANQE 502 Query: 468 VHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNI 527 +H+LQIIRE++ N +HA AS V+ + D + I DNG G+ E +GH+GL I Sbjct: 503 IHVLQIIRESLSNVHRHAEASLAGVNLIKEDD-KIKLAIWDNGRGLPSNLEQQGHFGLGI 561 Query: 528 MRERAERLGGTLTFSQPSGGGTLVSISF 555 M+ERA+ L L F S GT V + F Sbjct: 562 MKERAKSLNSVLAFEPNSPSGTKVLLEF 589 >UniRef50_B2Q6G3 Putative uncharacterized protein n=3 Tax=Enterobacteriaceae RepID=B2Q6G3_PROST Length = 586 Score = 418 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 167/581 (28%), Positives = 274/581 (47%), Gaps = 31/581 (5%) Query: 4 KRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQSG 63 + + + I +L I+ I+ + S +A AIN +GSLRMQSYRL + Sbjct: 9 RFSIINQVIGLMLLIAILGIIGMTISNRMIISVQGNAHAINKSGSLRMQSYRLLSLIPLN 68 Query: 64 SPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLE-MNNRLSKGDLPW-Y 121 + + + L S LT + E + +++ L+ WL+ + LS+ + Sbjct: 69 D-HTKEYLDILENDLSSLELTQVVKA---EDLTEKFSELHTFWLKTLRPALSEANSASDA 124 Query: 122 QANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLN 181 + + ++VN +D V + ERK+ V + +F L+ T+ +R ++ P Sbjct: 125 RYEVISFVNMLDELVHDIDEKTERKIAYVAMTQMIFIGLVFLLLMVTIWHLRRKIYYPWM 184 Query: 182 QLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLH 241 +L++ + I F + N +EL L T NQMS EL + Y LE+ V EKT DL Sbjct: 185 KLLSMAHAIGQKDFSQRYPNNNKQDELNTLGLTLNQMSDELAQSYHQLESRVAEKTADLR 244 Query: 242 EAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGEN--------WRI 293 R L LYQ +Q L++++ + +L +++ + + L L + E+ Sbjct: 245 NKNRVLSYLYQSNQILHSTEPLDLRLQKVLGELKNITSLKNLSLKLYEDSNEKYFHEICC 304 Query: 294 SEGQPNPELPMQI------------LPVTMQETVYGELHWQ---NSHVSSSEP-LLNSVS 337 + P E P I ++ YG + + N +S + L+ + Sbjct: 305 TSNDPLSEDPSFIPKDIVHHPKTLLWELSDNMHRYGVISAEIENNEDISEEQNNLVLMLV 364 Query: 338 SMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNAT 397 + L + QQLL+M+ER+ IARELHDS+AQ LS L++Q++ L+ Sbjct: 365 KQISGMLAMEHQIEQQQQLLIMDERSAIARELHDSIAQSLSCLKMQISYLQMQPESLPDK 424 Query: 398 AQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRL 457 Q ++++ +N AY QLRELLTTFRL L + L +L ++ + K+ L+ + Sbjct: 425 HQQLLSEMRGEINTAYSQLRELLTTFRLKLMEPGLLPSLESTINEFSQKMGFKILLNYHI 484 Query: 458 PTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPK 517 P ++ +H++QIIREA+ N +KHA+A+ V+ G T+ I DNG GI Sbjct: 485 PAKSISPHQSIHIIQIIREALSNILKHAHANWAQVTL-QQDSGVVTITIEDNGEGIAPTP 543 Query: 518 EPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSA 558 + HYGL IMRERA L G + GGT V ++F Sbjct: 544 SKQNHYGLIIMRERALSLNGECEIIPRAQGGTKVQVTFSLP 584 >UniRef50_C4GHV1 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GHV1_9NEIS Length = 578 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 141/580 (24%), Positives = 253/580 (43%), Gaps = 23/580 (3%) Query: 2 IVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQ 61 ++ + + + L ++ + ++ I +L A A+N G LR Q+YRL L Sbjct: 4 LIPKSLVSRLTLLVTTWLISAFIAISITMLLSLRLEGGAAAVNDTGGLRYQTYRLRLYL- 62 Query: 62 SGSPQLNAHRQLFQQALHSPV-LTNLNVWYVP--EAVKTRYAHLNANW-LEMNNRLSKGD 117 + + ++ + Q F Q L +P +++ L W ++ + + Sbjct: 63 NDTSKVQSLIQTFDQTLARLHHSDPTRPLNLPQDRSIQQHLKLLQQYWETQIKPQYQSPN 122 Query: 118 LPWYQAN---INNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRH 174 + I N+V ID ++H + + A + IF + T+ ++ Sbjct: 123 PNLALLDNHLIPNFVASIDSLTRTIEHNNAYYVQWLRVFQTALMVLIFVVSGITIVLLKI 182 Query: 175 QVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVE 234 ++ PL L T I++ QF + N E ++ FN+MSS L +LY LE V Sbjct: 183 WIIRPLKNLETGVAAIQNSQFGEHIPEDNS-TEFAIVDNGFNRMSSHLARLYGKLEQQVA 241 Query: 235 EKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRIS 294 EKT+DL L LY +Q LN +Q + L + AE +++V N Sbjct: 242 EKTQDLVRKNHTLNTLYTVAQELNQTQTIRQAAQTFLPHILALTPAEAADVSVHNNLIAR 301 Query: 295 EGQPNPELPMQILP------VTMQETVYGELHWQNSHVSSSEP---LLNSVSSMLGRGLY 345 + + PE P + P + ET G L + P L+ ++ L ++ Sbjct: 302 QSKRQPETPPSLPPFTQSFKIRANETTLGTLVLYYNQRQPENPDGGLVQTLVHQLALAIH 361 Query: 346 FNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIP-EDNATAQSIMAD 404 NQ + +Q +++ER TIA+ LHDS+AQ LSYL +Q +L+ + ++ AQ + Sbjct: 362 NNQLAEESRQYAVLQERNTIAQGLHDSIAQSLSYLSLQTQMLENAWANQETQAAQENLQS 421 Query: 405 FSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDA 464 + + Y +RELL FR + Q ++ A+ + L Q+ ++ + L Sbjct: 422 IKTGIQECYDDVRELLQNFRTKITQKNINEAIETLAQRLAEQSHIRVHTEWHGNGAPLTP 481 Query: 465 QMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGE-PKEPEGHY 523 Q+ + I++E++ N KHA A + + D +T+ I D+GIG + + H Sbjct: 482 SQQLQFIFILQESLSNIRKHAQAQNVTIRIDNQQD--YTLTITDDGIGFNPHTERTDDHI 539 Query: 524 GLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEES 563 GLNIM+ERA+R+ L+ T + ++ E ++ Sbjct: 540 GLNIMQERAQRIRARLSIQSQQNH-TRIQLTLPKKERNQT 578 >UniRef50_A4BGQ5 Signal transduction histidine kinase, nitrate/nitrite-specific n=1 Tax=Reinekea blandensis MED297 RepID=A4BGQ5_9GAMM Length = 562 Score = 414 bits (1064), Expect = e-114, Method: Composition-based stats. Identities = 169/569 (29%), Positives = 273/569 (47%), Gaps = 19/569 (3%) Query: 4 KRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQSG 63 + PV++ L + L+ +S L DA+A+N++GSLRMQSYR+ Y L+ Sbjct: 6 RYPVASLLIIGLITLAALAAVSGLYTLWMTTVLSGDAKAVNLSGSLRMQSYRIAYLLEQD 65 Query: 64 SPQ--LNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPWY 121 +PQ + + F++ L S L P + ++ + + +M+ + Y Sbjct: 66 APQEHIASLLDTFEERLTSAALKGQIPSDHPH-LTAAFSTVEQRFEQMHTAAIE-TPEIY 123 Query: 122 QANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLN 181 ++ +V ID V L+ ++E K+ + + + I +VV PL Sbjct: 124 LQEVDAFVEDIDTMVAQLESWSENKVQNLREQQILITLLSLLAAILFAIIINRRVVLPLQ 183 Query: 182 QLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLH 241 +L+ RI G + +D +E G LA T N+M+ E+ +++ SLE++++E+T +L Sbjct: 184 RLIRTVHRIGRGDRSAR-VDFQGRDEFGRLASTLNRMADEISQVHGSLESTIQEQTAELS 242 Query: 242 EAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPE 301 R LE L+ SQ L+T + D+ +H ++ E L L E+ Q Sbjct: 243 RNNRILEFLFTLSQRLSTEKPDITALKH--------QSVEELRLICPEHSINWHQQMYET 294 Query: 302 LPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEE 361 P + + Y +N + + LL +VS + + A H ++ L+ E Sbjct: 295 SPQGYVVRCDADQSYLICEQRNGLTAWQKQLLQTVSDLFDNAISRMGAYDHENRIALLNE 354 Query: 362 RATIARELHDSLAQVLSYLRIQLTLL--KRSIPEDNATAQSIMADFSQALNDAYRQLREL 419 R++IARELHDSLAQ LSYL+IQ+ L R D T SI+ + LN +YR+LREL Sbjct: 355 RSSIARELHDSLAQQLSYLKIQVVRLVKLRERQADEETLNSIIDELRDGLNSSYRKLREL 414 Query: 420 LTTFRLTLQQADLPSALREMLDTLQN---QTSAKLTLDCRLPTLALDAQMQVHLLQIIRE 476 L TFR L + L +++ +D + L ++ P L ++H + +IRE Sbjct: 415 LVTFRSQLDEPGLLPSVKAAIDDVNRMSPNCQIHLYIEDNWPE-TLTPSQEIHCMHVIRE 473 Query: 477 AVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLG 536 A+ N +KHA A VS P V I D+GIG GE HYGL+IM ERA R+G Sbjct: 474 AITNVVKHAKAENAVVSMKRLPSNTLQVTINDDGIGFGETLTKPMHYGLDIMAERAIRIG 533 Query: 537 GTLTFSQPSGGGTLVSISFRSAEGEESQL 565 G + + + GG V+++F EE +L Sbjct: 534 GNIDYKNLNHGGAGVTLTFPLNASEEDRL 562 >UniRef50_A6D1I3 Signal transduction histidine kinase, nitrate/nitrite-specific, NarQ n=1 Tax=Vibrio shilonii AK1 RepID=A6D1I3_9VIBR Length = 583 Score = 411 bits (1057), Expect = e-113, Method: Composition-based stats. Identities = 141/583 (24%), Positives = 261/583 (44%), Gaps = 43/583 (7%) Query: 7 VSASLARAFFYIVL--LSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQSGS 64 +S + +FF ++L +S+ I+L+T+ + +N GS+RM Y+ L + Sbjct: 6 ISITKKISFFILILCSISLSGMFISLITVDNIQGRTHIVNQIGSIRMLIYK--SILSTDK 63 Query: 65 PQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPWYQAN 124 + + + L++P N+ + + + ++ +L A + E + + ++N Sbjct: 64 SIRSENIIRINKKLNNP---NIIEYMIKSGLSDQHGNLLAFFQE---NIENQNYESIRSN 117 Query: 125 INNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLV 184 + +V ID + ++ E + + I A I I +++ + ++ P ++ Sbjct: 118 SDEFVKIIDNLIYKVERNTENNIKSLENIQKAFSIMIIIFGIYSIGNLYSRLFKPWMSIL 177 Query: 185 TASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAK 244 S+ I+ G F + +E+ L + N MS + + Y +LE V KT DL+ Sbjct: 178 DISRSIKSGDFSKKFIVQKHKDEMNELGDSINLMSESIKETYINLENVVYHKTEDLNRKN 237 Query: 245 RRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGE--------------- 289 + L+ LY+ + N Q + Q + + +++ + + Sbjct: 238 KYLDFLYRACKKFNNEQYSCDMLAPLTQELIELTGIHKVKILINDYQESDNTQIFDFGSI 297 Query: 290 -------NWRISEGQPNPELPMQILP-----VTMQETVYGELHWQNSHVS----SSEPLL 333 N + N + ++ L + YG++ N+ S +E L+ Sbjct: 298 SRPDFCKNLSCNLCFDNEKTFIENLSEITIKLKDSNHDYGKIVISNNIKSCINVENEQLI 357 Query: 334 NSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPE 393 + S +L + L + QQLL+++ER TIARELHDS+AQ LS L+I+L++L+ + Sbjct: 358 IAFSELLTQSLSVFYKVQQDQQLLILKERNTIARELHDSIAQSLSCLKIKLSILQMDLSN 417 Query: 394 DNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTL 453 + SI+ + + +N AY QLRELLTTFRL L AL + + K+ Sbjct: 418 LDEEQISIIGEMREEVNVAYCQLRELLTTFRLRLDGLGFLPALENTVKEYNKKIGTKINF 477 Query: 454 DCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGI 513 +P + +HL+QIIRE + N KHA AS++ + + D + ++ I D+G G Sbjct: 478 SYEIPANKISIHHSIHLIQIIRELLNNIYKHAQASDVTLDL-SMKDNDISLVILDDGCGF 536 Query: 514 GEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFR 556 +E YGL I+ +RA+ L G G GT ++F Sbjct: 537 STSQE-NSRYGLKIIGDRAQSLSGKWDIISSPGKGTEFYLTFP 578 >UniRef50_Q8VUK2 Putative nitrate/nitrite sensor protein n=1 Tax=Halomonas halodenitrificans RepID=Q8VUK2_PARHA Length = 644 Score = 407 bits (1047), Expect = e-112, Method: Composition-based stats. Identities = 175/610 (28%), Positives = 275/610 (45%), Gaps = 55/610 (9%) Query: 2 IVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYR-----L 56 +++ + A + + I ++++S + + S DA AIN+AGSLRM +++ L Sbjct: 3 LLQHSLVARIVASLLAISAMALVSIAVTMTVANDSRGDAAAINMAGSLRMNTHQILTALL 62 Query: 57 GYDLQSGSPQLN---AHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANW----LEM 109 YDL + + A + F+ L SP LT+ A++ ++ L + W L Sbjct: 63 RYDLHPDAAHDDGVAALVERFETRLASPELTDALPDAADHALRRQHRELLSRWTHDILPA 122 Query: 110 NNRLSKGD---LPWYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVF 166 NR D P V ID V L+ +E K+ L++ + +V Sbjct: 123 INRARAADDRQGPDPAPAFEALVGDIDALVTLLERNSESKIQLLIILQFLFLALTVVVVA 182 Query: 167 FTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLY 226 L IRH +V PL L+ ++ F +EL LL +TF+ M+ EL Y Sbjct: 183 IALYDIRHNLVTPLRHLLVLAREAARRNFGYRTH-FRGNDELALLGRTFDNMAEELATSY 241 Query: 227 RSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQID-----VHCFRHILQIVRDNEAAE 281 LEA K +L + R ++V++ S+AL D R + Q++ Sbjct: 242 AELEAHASLKQAELERSNRAMQVMHDGSRALYGGGNDLCASAAPMLRQLEQLLDVGPIRL 301 Query: 282 YLELNVGENWRISEGQPNPELP---------------------------MQILPVTMQET 314 L + +P P +LPV++ E Sbjct: 302 SLNDPHDDRQIPILATHSPHRPEYCRDHECHACLIDPQPLKLEQAQQGECLLLPVSVGEL 361 Query: 315 VYGELHW----QNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELH 370 + G L S LLN+++ L +Y + + QQ+ LM ER IARELH Sbjct: 362 MLGTLEVWHSRSQPLSDSVRRLLNALADQLATAVYLQRRIEEQQQVTLMNERTIIARELH 421 Query: 371 DSLAQVLSYLRIQLTLLKRSIPEDNATAQS--IMADFSQALNDAYRQLRELLTTFRLTLQ 428 DSLAQ LSYL++Q+ L+R ++ + + + L+ AYRQLRELLTTFRL L+ Sbjct: 422 DSLAQSLSYLKMQVARLERMQQKEAPRERQAAVFDELRTGLDSAYRQLRELLTTFRLKLE 481 Query: 429 QADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANAS 488 L SAL + + + L+ +P L+ ++H+LQ++REA+ N +KHANA Sbjct: 482 GPGLASALHQTAREFGKRLGYPVILEVDVPPHLLNPNEEIHVLQVVREALANVLKHANAH 541 Query: 489 EIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGG 548 A++ + V I D+GIG+ + P HYGL IMR+RA+ LGG +T GGG Sbjct: 542 WAAITI-NFQEARLHVVIEDDGIGLDDDSSPPMHYGLVIMRDRADTLGGEMTLHNRPGGG 600 Query: 549 TLVSISFRSA 558 T +++ F Sbjct: 601 TRLALVFTPQ 610 >UniRef50_B4S080 Signal transduction histidine kinase, nitrate/nitrite-specific n=1 Tax=Alteromonas macleodii 'Deep ecotype' RepID=B4S080_ALTMD Length = 588 Score = 403 bits (1037), Expect = e-111, Method: Composition-based stats. Identities = 168/574 (29%), Positives = 267/574 (46%), Gaps = 45/574 (7%) Query: 26 TGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQSGSPQLNAHRQL---FQQALHSPV 82 + + DA+A+N+AGSLRMQ+YR+ +Q + QL F L++ V Sbjct: 1 MFTTVFMSDGAQFDAQAVNVAGSLRMQTYRIHSVMQDSPGDIETINQLVDEFDLTLNTGV 60 Query: 83 LTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPWYQAN-------INNYVNQIDLF 135 L N + + +A + NW E +L + +L + N V I+L Sbjct: 61 LVNQQALWDNGDIAKHHAIVANNWNEQVKQLIQTNLASPSNSNTSSLEVFNKLVEDIELL 120 Query: 136 VLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQF 195 V+A Q YAE + + + L+ + + + PL++L + +++I G F Sbjct: 121 VVAYQKYAEINIANIRLVQSLALFSTLILIAIAMMIVHRHIEQPLSKLTSVARQIGQGDF 180 Query: 196 DSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQ 255 + +T EL LLA+T N+MS L++ LE ++ KTR L + + LE+L+Q S+ Sbjct: 181 TARAEET-GKGELALLARTINKMSGSLYRSKSQLEEQIKRKTRKLTRSNQSLELLFQVSR 239 Query: 256 ALNTSQIDVHCFRHILQIVRDNEAAEYLELNVG--------ENWRISEGQPNPELPMQIL 307 LN + F+ +L + D + L+L + E+ SE + Q+ Sbjct: 240 RLNEVEPGSADFQPLLNKLADVTGVKDLDLCIMTAQGTGPYEHLMSSEKTIPDKCQQQLC 299 Query: 308 P-------------------VTMQETVYGELHWQNSHVS----SSEPLLNSVSSMLGRGL 344 + + + YG L S L +++ + GL Sbjct: 300 HDCTEHDSLFPPVNGQMKYQLNIGDQHYGVLVVSLDEGSILEDWQHQLFEAIAEQVANGL 359 Query: 345 YFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQ--SIM 402 + +++ LM ER IARELHDSLAQ LSYL+IQ+T L+R +++A Q ++ Sbjct: 360 SMKHQNEQRRRIALMNERTVIARELHDSLAQALSYLKIQVTRLQRLQQKESAQEQIDQVI 419 Query: 403 ADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTS-AKLTLDCRLPTLA 461 + L AY +LRELLTTFRL L + +AL + + LQN++ TL+ + + Sbjct: 420 DELKNGLGAAYSELRELLTTFRLKLDGQGIKAALEQTISQLQNRSDDFNFTLNYHVSNIP 479 Query: 462 LDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEG 521 Q ++HLLQI REA NA H+ I +S + + ++DNGIGI E Sbjct: 480 FTPQEEIHLLQIAREATQNAFYHSQGFNIDISITSNSLSEVILTVKDNGIGIPEDPNKLN 539 Query: 522 HYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 HYGL IM+ER+ L G L+ + GT V SF Sbjct: 540 HYGLAIMKERSRNLDGELSVKRNDERGTTVMFSF 573 >UniRef50_Q5NYZ8 Nitrate/nitrite sensor kinase n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5NYZ8_AZOSE Length = 651 Score = 403 bits (1036), Expect = e-111, Method: Composition-based stats. Identities = 153/647 (23%), Positives = 261/647 (40%), Gaps = 88/647 (13%) Query: 1 MIVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDL 60 + ++ ++ + L+++ + G+ L A AIN AGSLRM++YR+ + L Sbjct: 2 LRLRNSLATKITGILLVFFLVALTAIGLTLFISWQLEGAAAAINDAGSLRMRAYRIDHLL 61 Query: 61 QSGSPQLNAHRQLFQQALHSPVL------------TNLNVWYVPEA--VKTRYAHLNANW 106 G + F +L S ++P + + W Sbjct: 62 ARGPAATSNDPMAFTASLKSEFDDFERVFGELRRGDPRRPLFIPRDNGIPADLDEMAEFW 121 Query: 107 -LEMNNRLS-----------KGDLPWYQANINNYVNQIDLFVLALQHYAERKMLLVVAIS 154 L + L+ + L + + ++V+ I+ VL ++ R ++ A Sbjct: 122 SLRIRPVLADLIATSDPERRRPGLAEFDRTVKSFVSGINEVVLKMERSYARNTDILRASQ 181 Query: 155 LAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKT 214 ++ +R V+ P+ +L +R+E F++ + +E G L++ Sbjct: 182 VSLIALAIIGTLVLIRFFFVLVIQPVCELQDGMKRMEQEDFNAR-VPVLASDEFGELSEG 240 Query: 215 FNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIV 274 FN+M+ L LY +LE V KTR L R LE+LY L R LQ V Sbjct: 241 FNRMAVHLQGLYATLEERVAAKTRSLEGKNRELEILYDIGAFLREPSDVDSLCRGFLQRV 300 Query: 275 RDNEAA----------------------------------EYLELNVGENWRISE----- 295 + A + E GE R Sbjct: 301 QATFGAGASSARLLDSGSENLCLTVHNGLDREFIDREAVLQCGECLCGEAVRRGTSLVSE 360 Query: 296 -GQPNPELPMQIL-----------PVTMQETVYG--ELHWQNSHVSSSEP--LLNSVSSM 339 P+P L + + +T + G L++ + S LL ++ Sbjct: 361 LSAPDPALTLSVCRRAGFQVITATAITANKQTLGIYNLYFVGARPLSDSDRLLLETLGQQ 420 Query: 340 LGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNA-TA 398 LG + + Q ++ + EER +ARELHDS+AQ L+++ +Q+ +L+ ++ + A A Sbjct: 421 LGIAIENQRLQASGREHAVSEERNLLARELHDSIAQGLAFMNLQVQMLESALDRNEAGEA 480 Query: 399 QSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLP 458 + +A Q + ++Y +RELL FR +++ DL A+ L L QT LD Sbjct: 481 RDTLAMLRQGVQESYDDVRELLVHFRTRVEKQDLALAITATLRRLAEQTGIATDLDVLGD 540 Query: 459 TLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKE 518 LDA+ + +L +++EA+ N KHANA + V DG +V +RD+G+G E Sbjct: 541 AAPLDAEAETQVLYVVQEALSNVRKHANARSVKVVIRRGIDG-LSVVVRDDGVGFDEADR 599 Query: 519 ----PEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGE 561 E H GL IMRER R+GG + G GT + + + E Sbjct: 600 STAAQEAHIGLEIMRERTLRIGGRFSIRSARGKGTEIRVELSRVKKE 646 >UniRef50_Q0HUB7 Signal transduction histidine kinase, nitrate/nitrite-specific, NarQ n=2 Tax=Shewanella RepID=Q0HUB7_SHESR Length = 589 Score = 400 bits (1028), Expect = e-110, Method: Composition-based stats. Identities = 149/574 (25%), Positives = 237/574 (41%), Gaps = 44/574 (7%) Query: 26 TGIALLTLASSLRDAEAINIAGSLRMQSYRLGY---------DLQSGSPQLNAHRQLFQQ 76 I+ S A AI+ GS+RM+SYRL L + SP ++ Q Sbjct: 1 MVISSWVSNSLQGSAHAIDEIGSMRMKSYRLLSFLPLENEQKLLLANSPFISKLNIGKNQ 60 Query: 77 ALHSPVLTNLNVWYVPEAVKTRYAHLNANW-LEMNNRLSKGDLPW-YQANINNYVNQIDL 134 + L V+ E + + L W L++ L + ++ +V ++D Sbjct: 61 LNKGEDVVKLKVFLEREDLINDFNDLYQYWNLQLQPTLLSAKTASDARVKVDFFVAKLDN 120 Query: 135 FVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQ 194 V + E K+ LV + L + ++ ++ P +L+ + I G Sbjct: 121 LVKKIDSNTEVKLKLVSRVHSVFIFLSVLLTIVGVVFLKLRIFRPWQELLRIANSISSGD 180 Query: 195 FDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCS 254 F + +E+ +L + MS++L K+Y LE V++KT + E L LY+ S Sbjct: 181 FSQRFRERKYHDEMTILGDAMSCMSTQLRKMYDELERRVQQKTLHIREQNLWLSFLYRSS 240 Query: 255 QALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGE------------------------- 289 L++S + IL+ + + ++L + E Sbjct: 241 NQLHSSASTCLRYFPILKELEELIPFTSMQLRLYEYNNSNNFEQFKTSNTVRPKYCADHE 300 Query: 290 ---NWRISEGQPNPELPMQILPVTMQETVYGELHWQ----NSHVSSSEPLLNSVSSMLGR 342 S Q M P+ Q YG + L+ ++ L Sbjct: 301 CELCLDKSFSQSTLNCKMLEWPLRDQYGEYGVMIAYCLNDQDLTPLQSQLVKTLVEQLST 360 Query: 343 GLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIM 402 L +QL++M+ERA IARELHDS+AQ LS L+I+++ L+ A ++ Sbjct: 361 SLALEYQDYKNKQLMIMDERAVIARELHDSIAQSLSCLKIKVSCLQMQSKNLGAEQLVLI 420 Query: 403 ADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLAL 462 + LN AY LRELLTTFRL L + L AL ++ + + L +LP + Sbjct: 421 QEMRTELNSAYSHLRELLTTFRLKLNEPGLHPALESTIEEFNKKLGFSIELIYQLPPNCV 480 Query: 463 DAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAP-DGNHTVYIRDNGIGIGEPKEPEG 521 + +HL+ I+REA+ N KHANA V P + V IRDNGIG+ Sbjct: 481 SSHQAIHLVHIVREALSNIYKHANADCAVVQLDFDPIHNHIQVVIRDNGIGLSGDMTKVN 540 Query: 522 HYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 HYG++IM +RA+ L G + GG V I F Sbjct: 541 HYGISIMNDRAKNLPGKCSIDNHLNGGVEVKILF 574 >UniRef50_Q5P3L3 Nitrate/nitrite TWO-component sensor NARX n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5P3L3_AZOSE Length = 648 Score = 398 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 180/626 (28%), Positives = 277/626 (44%), Gaps = 66/626 (10%) Query: 2 IVKRPVSAS-----LARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRL 56 V+ ++ L AF + +S++ G ++ + + A+N AG LR ++R Sbjct: 18 RVRASLAGRATQLLLVLAFVAVAFISLVGIGASVAIVETVQDSGSAVNAAGGLRRLAHRA 77 Query: 57 GY-------DLQSGSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANW-LE 108 D ++G + A F+ L L + V + Y ++ +W + Sbjct: 78 ASVALAAALDGRTGHADVAAAIGAFEAELGHATLEKVLEREPDSVVASIYRGIHRDWYVN 137 Query: 109 MNNRL--------SKGDLPWY---QANINNYVNQIDLFVLALQHYAERKMLLVVAISLAG 157 + RL D+ +Y A+++ + QID V L+ E + + Sbjct: 138 LKPRLLGAPERASESPDVLFYENLLADVDAFTAQIDALVAVLERETETGLEQLRITLAVA 197 Query: 158 GIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQ 217 + ++ L IR +V PL +L + RI G F + T +ELG + FN Sbjct: 198 LGMVMIVMIAALCVIRRRVFRPLTELHACAARIAGGDFRAHSRYT-GRDELGRVGSAFNA 256 Query: 218 MSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALN----TSQIDVHCFRHILQI 273 M+ EL +YR LE VE+KT DL + R LE+LY L + + V + + Q+ Sbjct: 257 MADELSTVYRDLEQRVEQKTADLTRSNRALELLYHVIARLYHAPASPETYVETLKDLEQV 316 Query: 274 V-----------RDNEAAEYLELNVGENWRIS------EGQPNPELPMQ----------I 306 + + A L +G+ S P +P + Sbjct: 317 LGLKGSFVCVQPKHGGVATVLSTTMGDCPSRSGSEEECTHCPGRAMPWSYRREDGFDVFL 376 Query: 307 LPVTMQETVYGELHWQ----NSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEER 362 +P+ + +YG + + L+ +VS +G L + + + L L EER Sbjct: 377 VPLRDADHLYGMMRLALLPGERLRAWQHTLVEAVSRHMGIALGISHQSERERLLALQEER 436 Query: 363 ATIARELHDSLAQVLSYLRIQLTLLKRSI--PEDNATAQSIMADFSQALNDAYRQLRELL 420 + IARELHDSLAQ LSY++IQ +LL ++ PE A I+AD +N AYRQLRELL Sbjct: 437 SIIARELHDSLAQSLSYMKIQASLLSSALQRPERRDDASDILADMKGGINAAYRQLRELL 496 Query: 421 TTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLN 480 +TFRL ++ D L ++ ++ + L+ RL L+ ++H+L IIREA+ N Sbjct: 497 STFRLQMEG-DFARLLGSTVEEYAGRSGMPIDLEIRLGGRHLNPNQEIHVLHIIREALSN 555 Query: 481 AMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEG-HYGLNIMRERAERLGGTL 539 A +HA AS I V PDG V I D+G GI E HYGL IM ERA LGG L Sbjct: 556 ATRHARASSIRVGLFGHPDG-VRVIIEDDGKGIRAAAATEPHHYGLAIMGERARGLGGVL 614 Query: 540 TFSQPSGGGTLVSISF-RSAEGEESQ 564 GGT V++ F A E S Sbjct: 615 EIVPRPDGGTRVAVRFDPVARHEASS 640 >UniRef50_C5T4I9 GAF sensor signal transduction histidine kinase n=2 Tax=Acidovorax RepID=C5T4I9_ACIDE Length = 653 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 145/621 (23%), Positives = 249/621 (40%), Gaps = 67/621 (10%) Query: 1 MIVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDL 60 M K P++ L +L+++ S G+ L A A+N AG LRM R+ Sbjct: 16 MRTKSPLTFKLLAMGGGFLLVALASIGLTLWVAWKLEGGAAAVNEAGRLRMNMLRMVLVQ 75 Query: 61 QSGSPQL-NAHRQLFQQALHS-PVLTNLNVWYVPE--AVKTRYAHLNANWLEMNNRLSKG 116 Q+ SP+ H + F +L +VP + R+ + W + + G Sbjct: 76 QTESPEEVQRHARQFDASLELLRTGDPSRPLFVPWGADTRERFEEIRTTWGGLRKEWAVG 135 Query: 117 ---DLPWYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIR 173 D A +++V+++D FV A++ ++ L+ + Sbjct: 136 LPPDRARSLAQADSFVHKVDGFVEAIEIQIAGWTAVLHIFQLSMMAVAIAAAITFMAVSY 195 Query: 174 HQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASV 233 V+ P++QL A R+ G L +E G L+ FN M+ L + LE V Sbjct: 196 LLVLNPVSQLQQAQARLRQGDLGVR-LPVEADDEFGQLSAGFNLMAHALQASHEELEQKV 254 Query: 234 EEKTRDLHEAKRRLEVLYQCSQALNT----SQIDVHCFRHILQIVRDNEAAEYLELNVGE 289 EKT ++ +RL LY+ S ++ + + I ++ + AA E Sbjct: 255 REKTANIAVQNQRLAALYEVSALASSATGLEALAQGFVKQIRRVAGADAAAVRWSDEANE 314 Query: 290 NWRI----------------------------------------------SEGQPNPELP 303 + + + Sbjct: 315 RYVLLAGDGMPVAMTEEEHCLHTGACMCGQPQSQARTRVIPIVPSTTLAFPHCRDAGFQT 374 Query: 304 MQILPVTMQETVYGELHWQ----NSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLM 359 M +PV MQ+ + GE++ +H LL +++ L + +A ++ + Sbjct: 375 MVAIPVQMQQRLLGEINLFFRSPTAHTDEVRDLLEAMTRHLASAMEGLRATALEREAAVA 434 Query: 360 EERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSI-MADFSQALNDAYRQLRE 418 EER+ +ARELHDS+AQ L++L+IQ LL+ ++ + + A+ M + + + Y +RE Sbjct: 435 EERSLLARELHDSIAQSLAFLKIQTQLLRDAVAKGDVVARDRSMGELDVGVRECYADVRE 494 Query: 419 LLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAV 478 LL FR + D+ +ALR L ++QT TL L L +Q+ +L +++EA+ Sbjct: 495 LLVHFRTRTSEEDIEAALRATLSKFEHQTGIATTLTMAGHGLPLPPDVQIQVLHMVQEAL 554 Query: 479 LNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEG--HYGLNIMRERAERLG 536 N KH+ A+ + + P + DNG G P H GL IMRERA+R+G Sbjct: 555 SNVRKHSGATRVELHVHRHP--RWRFEVLDNGTGFRVDAVPPDSLHVGLGIMRERAQRIG 612 Query: 537 GTLTFSQPSGGGTLVSISFRS 557 + G G V I + Sbjct: 613 AVVQVESSPGEGARVCIELPT 633 >UniRef50_Q4FU45 Signal transduction histidine kinase sensor n=2 Tax=Moraxellaceae RepID=Q4FU45_PSYA2 Length = 707 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 165/670 (24%), Positives = 289/670 (43%), Gaps = 117/670 (17%) Query: 2 IVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQ 61 +++ + A F I +L +ST + S DA+AIN AGS+RM +YR+ + L Sbjct: 24 LLRHSLPLHAWGAIFTISILCFISTLGGGMLAWVSETDAQAINTAGSIRMATYRISFQLA 83 Query: 62 S------------------------GSPQLNAHRQLFQQALHSPVLTN------------ 85 + G+ + ++ +Q SP+ Sbjct: 84 TNFSENNPFDLNIGLKKNDLEGKKEGTENVKGENRIGEQDKLSPIRKEKTEEISTLIEDM 143 Query: 86 -----------LNVWYVPEAVKTRYAHLNANW-LEMNNRLSKGDLPWYQANINNYVNQID 133 L E + + + + W E+ L D + Y+ +D Sbjct: 144 ESRLAELHDYQLANANDNEGINNQLKQIESQWFRELKPALLSQDAQKFYIVSFKYIEDVD 203 Query: 134 LFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHG 193 FV LQ+ E++ + + + ++ ++R+R V+ P+ QL+ A+ + + G Sbjct: 204 SFVNELQYRNEQRQTWQQILQIVSLVLTVIIMLVGMQRLRQNVLIPVQQLIKANYKFKQG 263 Query: 194 QFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQC 253 + ++ + + E L +FN M+S + RSLE+ V+ KT+ L +A + L + Y Sbjct: 264 KRNTK-VSISGYTEFNALGDSFNDMASTIETHQRSLESEVQIKTQHLVKANQVLSLFYDF 322 Query: 254 SQALNTSQIDVHCFRHILQIVRDNEAAEYLELNV------GENWRISEGQPNPELPMQI- 306 S++L TSQ+ ++ ++ L + +N I G+ EL ++ Sbjct: 323 SKSLTTSQVSLYRLDTLITDFGKILPHLEFTLCIQNKFINNKNAIILHGEKMKELCKKLN 382 Query: 307 --------------LPVTMQETVYGELHWQ----------------NSHVSSSEP----- 331 P+ Q+ +GEL + + + SS+ Sbjct: 383 CDNCLTKEGVYTKSYPIAHQKVEFGELKVRPKSVLLINSTLFPNNNDGNTPSSQRIQIAK 442 Query: 332 --------------------LLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHD 371 L+ ++++++ L + ++ QL+L EER+TIARELHD Sbjct: 443 EGRTFFESEIGSELDLENNELIVALTNLISTALSLRKQRQQEHQLILFEERSTIARELHD 502 Query: 372 SLAQVLSYLRIQLTLLKRSI-----PEDNATAQSIMADFSQALNDAYRQLRELLTTFRLT 426 SLAQ LSYL+IQ+++L+R + ++ A+ + + L+ AY+QLR+LL TFRLT Sbjct: 503 SLAQSLSYLKIQISVLERHLKNGSDEQNEASVRQHIDQIKAGLSSAYQQLRDLLITFRLT 562 Query: 427 LQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHAN 486 + + AL E + + ++T+ R+ TL L A Q+ L+QI REA+ N +HA Sbjct: 563 IDNDNFDEALHEAANEFALKGKFEITVSNRVMTLNLSATEQIDLIQIAREALSNISRHAQ 622 Query: 487 ASEIAVSCVTAP-DGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPS 545 A + + D + I DNG+GI + H+GL IM+ERA LGG L S Sbjct: 623 AENVEIDLGYDDEDKYIVMTIVDNGVGISGTVDQTQHHGLMIMKERAHNLGGELIVSNNE 682 Query: 546 GGGTLVSISF 555 GT ++ F Sbjct: 683 SQGTTITAKF 692 >UniRef50_Q1ZGB4 Nitrate/nitrite sensor protein n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZGB4_9GAMM Length = 549 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 156/546 (28%), Positives = 270/546 (49%), Gaps = 8/546 (1%) Query: 18 IVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQSGSPQLNAHRQLFQQA 77 I+L+S++ T S + D +I+ G ++ +++L Y LQ+ + + Sbjct: 2 ILLISVVHLLATFSTFDSHIADTRSISKLGEFKINTFKLLYALQNDPEKTPLLLAEIENT 61 Query: 78 LHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPWYQANINNYVNQIDLFVL 137 + L W+ ++ A L A W + ++ D+ + ++ I+ + Sbjct: 62 IRPAKLLKS-SWFNTHSLNENSALLLARWQSIEEAFAQNDVAGAHVKLLYFIKSINRVID 120 Query: 138 ALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDS 197 Q A++KM LV + + F ++ + P+NQL + I+ Q+D Sbjct: 121 QYQTLADQKMTLVHLAEFIAFMLLACTGLFLYFYSKNYISEPINQLAKNVESIKKHQYDV 180 Query: 198 PPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQAL 257 + NE G+LA+ M +E+ +L ++ V +KT++L A + + L SQ L Sbjct: 181 NFP--HYKNEFGILAQGMRDMYAEIQQLISQMKTQVHQKTQELENANQTIAFLLSISQQL 238 Query: 258 NTSQIDVHCFRHILQ--IVRDNEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETV 315 + ++ L + + N +ELN G + G P+ + Sbjct: 239 GSVKLTSPVLYDALNALVKQANLKRVCIELNNGTFIQSKSGCSGINCRNSRFPIVINGKP 298 Query: 316 YGELHWQNSHVSSSEP-LLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLA 374 YG L++ + + S + L+ S S ++ R L + + Q++L+MEER IARELHDS+A Sbjct: 299 YGFLNYYSENESPEQRALIESFSVLIARALCQQENVQQTQKILIMEERNIIARELHDSIA 358 Query: 375 QVLSYLRIQLTLLKRSI-PEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLP 433 Q LS+L+IQ T+L + + ++ A + +A++DAY QLR LL+TFRLT ++ Sbjct: 359 QSLSFLKIQCTVLHQQVHQKEQQKALQSIHHIDEAISDAYAQLRSLLSTFRLTATHSNFK 418 Query: 434 SALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVS 493 A++ ++ TLQ QTSA++TL A Q+HLLQI+REA++NA+KHA+ I VS Sbjct: 419 EAVQMLISTLQKQTSAQITLKEFSTHFYSAANQQIHLLQIVREAIINAIKHADCQHIDVS 478 Query: 494 CVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSI 553 C+ PD N + I D+G GI E HYG++IM +R++ +G T + + GT V + Sbjct: 479 CLLTPDNNIWISIIDDGKGITNTSAIENHYGISIMEQRSDEIGATFSILPLA-SGTEVKL 537 Query: 554 SFRSAE 559 F + Sbjct: 538 IFPYKK 543 >UniRef50_C7I506 GAF sensor signal transduction histidine kinase n=1 Tax=Thiomonas intermedia K12 RepID=C7I506_THIIN Length = 643 Score = 393 bits (1011), Expect = e-108, Method: Composition-based stats. Identities = 154/619 (24%), Positives = 269/619 (43%), Gaps = 72/619 (11%) Query: 7 VSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDL-QSGSP 65 ++A +A +LLS++S G L + A A+N+AG LRM SY++ Sbjct: 7 LTAKIALFSGAFLLLSLMSIGATLWISWNLEGGAAAVNVAGQLRMLSYKVALAATDHDDT 66 Query: 66 QLNAHRQLFQQALHSP-VLTNLNVWYVPEA--VKTRYAHLNANWLEMNNRLSKGDL--PW 120 QL++ QL Q L + YVP ++ RY + A+W + R P Sbjct: 67 QLSSDLQLIQDNLVLLHAGSPSRPLYVPWDGIIRQRYDAVRAHWQSLQPRWESASQAHPV 126 Query: 121 YQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPL 180 + +N +V QID FV +++H + ++ A + + V+ P+ Sbjct: 127 PREEVNQFVTQIDAFVSSIEHRLDFWTTVLHAFQMGLAALVVIGALLMFYAAYLFVLDPV 186 Query: 181 NQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDL 240 +L Q +E G + + +D N +ELG LA FN+M+ +L +Y LE V +KT L Sbjct: 187 GRLSRGVQALEQGDYSAR-VDINTTDELGDLAIGFNRMAGQLQAVYDELEERVRQKTAAL 245 Query: 241 HEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVR-------------DNEAAEYLELNV 287 ++RL LY+ S ++ +Q + +Q+VR D A YL L Sbjct: 246 RTEQQRLAALYEVSALVSKAQSLDELSQSFVQVVRRIAGADAAALRWTDESARRYLLLAS 305 Query: 288 GE---------------------------------NWRISEGQPNPEL---------PMQ 305 + EG+ P + Sbjct: 306 DGLPAVLAEEEQCLMSDTCFCGQAQHHGGPQIVQFHRLQPEGRALPGRVACERLGYATLL 365 Query: 306 ILPVTMQETVYGEL----HWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEE 361 +PV Q+ + GE+ H + S + LL++++ L + ++ ++ + +E Sbjct: 366 SIPVRAQQRLLGEIDLFFHAEQSADEAQHALLDTLAGHLAAAMESLRSAALEREAAVSQE 425 Query: 362 RATIARELHDSLAQVLSYLRIQLTLLKRSIPEDN-ATAQSIMADFSQALNDAYRQLRELL 420 RA +ARELHDS+AQ L++++IQL LL+ ++ + ++++ + ++ +RELL Sbjct: 426 RAFLARELHDSIAQSLAFMKIQLQLLRTALQAGKVGKIEQVVSELEVGVKESLADVRELL 485 Query: 421 TTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLN 480 FR Q+ D+ ALR + + Q+ + L LD +Q+ +L I++EA+ N Sbjct: 486 LHFRTRTQEQDIEPALRSTVQKFELQSGLSVDLVFHGHGQPLDPDVQIQVLHIVQEALSN 545 Query: 481 AMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGE---PKEPEGHYGLNIMRERAERLGG 537 KHA A++ + + P + D+G G ++ + H G IMRERA +GG Sbjct: 546 IRKHAKATQARLVVDSLPRWRFV--VSDDGRGYDPEVIAQDGQAHVGQQIMRERAAAIGG 603 Query: 538 TLTFSQPSGGGTLVSISFR 556 L+ GG V++ Sbjct: 604 HLSIEAQPKGGVRVTLELP 622 >UniRef50_B4RLW4 NarX/NarQ n=17 Tax=Neisseria RepID=B4RLW4_NEIG2 Length = 589 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 144/572 (25%), Positives = 246/572 (43%), Gaps = 25/572 (4%) Query: 6 PVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQSGSP 65 P+S L V L+ LS + LL A I AG+L+MQ+YRL Y GSP Sbjct: 12 PLSLRLKLLTGLWVGLAALSVVLTLLLSFRLENAASVIEEAGNLKMQAYRLAYMAGEGSP 71 Query: 66 --QLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRY----AHLNANWLEMNNRLSKGDLP 119 Q++ F+++L ++ +P Y + L +W + Sbjct: 72 RAQIDNQIAEFEKSLKRISQSDAIHPLIPSDNPLAYDLIQSMLIIDWQANILPPLQAYRR 131 Query: 120 WYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAP 179 Q + + I+LF+ AL++ E+ + + L + V+ P Sbjct: 132 PTQIELYRFAGNIELFLQALENAGEKNTWWLRRFQWVIMLMTLVSSVLMLFWHQIWVIRP 191 Query: 180 LNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRD 239 L L ++RI FD P + P E + + FNQM+ L LY LE V E+T + Sbjct: 192 LQALREGAERIGQRHFDIPVPEDGTP-EFKQVGRCFNQMALRLKTLYDDLEGQVAEQTHN 250 Query: 240 LHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAE----YLELNVGENWRISE 295 L + R L +LY+ ++ L+ S L + A+ LE + + Sbjct: 251 LEKQNRNLTLLYRTTRDLHQSYTPRQAAEEFLNHILPAVGAQSGNICLENGSDTDISVHT 310 Query: 296 GQPNPELPMQ-----ILPVTMQETVYGELHWQ----NSHVSSSEPLLNSVSSMLGRGLYF 346 + + P++ P+ Q G L S LL ++ LG L Sbjct: 311 AEHGKKPPLEKYHDETFPIEYQNEKLGMLSLGFSDGTSLTGDDRTLLQTLIRQLGVSLAG 370 Query: 347 NQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPED-NATAQSIMADF 405 + ++ + L +++ER+ IA+ LHDS+AQ L++L +Q+ +L+ + E+ A + Sbjct: 371 AKQEEEKRLLAVLQERSLIAQGLHDSIAQALTFLNLQVQMLETAFAENKREEAAENIGFI 430 Query: 406 SQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQ 465 + + Y +RELL FR + + P A+ ++ QT + + Sbjct: 431 KTGVQECYEDVRELLLNFRTKISNKEFPEAVADLFARFTQQTGITVETVWENGSFLPTQD 490 Query: 466 MQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPK--EPEG-H 522 Q+ ++ I++E++ N KHA A+ + + + G T+ I+DNG G K EP G H Sbjct: 491 EQLQMIFILQESLSNIRKHARATHVKFTL-SEYGGRFTMTIQDNGQGFDTEKIGEPTGSH 549 Query: 523 YGLNIMRERAERLGGTLTFSQPSGGGTLVSIS 554 GL+IM+ERA+R+ L + GT VS++ Sbjct: 550 VGLHIMQERAKRIRAVLEIRSQAQQGTTVSLT 581 >UniRef50_A2SGG0 Signal transduction histidine kinase, nitrate/nitrite-specific, NarQ n=2 Tax=Burkholderiales RepID=A2SGG0_METPP Length = 643 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 161/624 (25%), Positives = 260/624 (41%), Gaps = 73/624 (11%) Query: 4 KRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQSG 63 + ++A L I+++++ S + A A+N AG LRMQ++R + Sbjct: 14 RASLAAKLGALGSLIMVVALGSIAFTVWVTWQLEGGAAAVNEAGRLRMQTWRYAQVASAQ 73 Query: 64 S-PQLNAHRQLFQQALHS-PVLTNLNVWYVPEAVKTR--YAHLNANWLEMNNRLSKGDLP 119 PQL A Q + L +VP TR + + W + +S+G P Sbjct: 74 DLPQLPALAQQYDATLALLDAGDPARPLFVPRDEDTRAALQAVRSRWQALQRAISEGATP 133 Query: 120 WYQANIN-NYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVA 178 + + V +ID V ++ + +R ++ A+ L + Sbjct: 134 LQAGQLAGDLVIEIDHLVTGIEAHLQRWTSILSALQFTLLALALAAGVALLYAAHLFIFQ 193 Query: 179 PLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTR 238 PL +L + + G + +D +E G +A FN M+ L LYR LE V EKT Sbjct: 194 PLARLQRGLEAVARGDLGAR-VDVETHDEFGEVADGFNHMAMRLEDLYRGLETKVAEKTE 252 Query: 239 DLHEAKRRLEVLYQCSQALNTSQIDVHCFR-------------------------HILQI 273 L + RL LY+ S+ + + + +L + Sbjct: 253 HLRTERERLAALYEASRRVAQAASLDELAQGFVRQFREVARADAALLRWHDAEQGRMLML 312 Query: 274 VRDNEAAEYLE----LNVGENWRISEGQPNPELPMQI----------------------- 306 D A LE L G+ + P + I Sbjct: 313 AADRVPAAMLEHERCLAPGDCHCGNGAAPGGPRTITIHALTDGDTGDSAGTCRRFGFQRV 372 Query: 307 --LPVTMQETVYGE--LHWQN---SHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLM 359 LPV +Q+ GE L W++ + LL +++ L G+ +AQ ++ + Sbjct: 373 LTLPVLLQDQTLGEVDLLWRDATRPVLDDDRALLEGLAAQLAGGIESVRAQALQREAAVS 432 Query: 360 EERATIARELHDSLAQVLSYLRIQLTLLKRSIPE-DNATAQSIMADFSQALNDAYRQLRE 418 EER IARELHDS+AQ L++++IQL +L+ ++ D A ++ + + ++ +RE Sbjct: 433 EERGFIARELHDSIAQALAFMKIQLQMLRGALRRGDPAATTRVVDELDAGVRESLADVRE 492 Query: 419 LLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAV 478 LL FR A+L +ALR L Q+QT LD R P L L +QV LL +++EA+ Sbjct: 493 LLLHFRTRSDGAELAAALRATLQKFQHQTGLPAQLDVRGPVLPLAPDVQVQLLHVVQEAL 552 Query: 479 LNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKE-----PEGHYGLNIMRERAE 533 N KHA A ++ V+ P+ +V +RD+G G +GH GL IMRERA Sbjct: 553 SNVRKHAQARQVWVTLDPRPE--LSVTVRDDGRGFDLAARNSDDGDDGHVGLRIMRERAA 610 Query: 534 RLGGTLTFSQPSGGGTLVSISFRS 557 +G + + G GT V I+ S Sbjct: 611 GIGAEVEITSTRGEGTQVRIAVPS 634 >UniRef50_Q47HU2 GAF:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase, dimerization and phosphoacceptor region n=1 Tax=Dechloromonas aromatica RCB RepID=Q47HU2_DECAR Length = 646 Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats. Identities = 146/636 (22%), Positives = 248/636 (38%), Gaps = 86/636 (13%) Query: 7 VSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQSG--- 63 +S + L++ + G+ LL A AIN AGS RM++YRLG+ + G Sbjct: 8 LSRKIIGVLVVFFLVATSAIGLTLLISWQLEGVAAAINDAGSQRMRTYRLGHLMARGLEA 67 Query: 64 -------SPQLNAHRQLFQQALHSPVL-TNLNVWYVPE--AVKTRYAHLNANWLEMNNRL 113 + L+ F + L L P V+ R + +W + L Sbjct: 68 ETQVAALTAALSEEVVRFDKVQRDLQLGDPLRPLSSPRNFEVQDRLHDVEQSWRRIIRPL 127 Query: 114 SKGDLP-----------WYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIF 162 + L + + V I+ VLA++ L+ + +A + Sbjct: 128 VESYLAGDHQARSEVLDRFDLELEPSVMGINELVLAMERSYAYDTNLLRYVQVALVLLAI 187 Query: 163 TLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSEL 222 +R V+ P++ L +R+ + + +ELG LA FNQM+ L Sbjct: 188 FGTVILIRFFEQLVIRPVSLLHVGMRRMTGNDL-TVRVPVTSDDELGGLAAGFNQMAEHL 246 Query: 223 HKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHIL----------- 271 Y SLE +E +TR L + L +LY + L+ L Sbjct: 247 EDAYGSLEQRIEAETRRLAQRNHELGILYAATSFLSEPAPLEALCEGFLDHIKNALGADA 306 Query: 272 ----------------------------------------QIVRDNEAAEYLELNVGENW 291 ++ + + A + N E Sbjct: 307 GAVRLYVPQTDKLYLMTHEGLSDEFVANEGQLNCGECLCGEVFQSSRPAAFATANPPEGM 366 Query: 292 RISEGQPNPELPMQILPVTMQETVYG--ELHWQNSHVSSSEP--LLNSVSSMLGRGLYFN 347 R+ + + G L+++ S S + LL ++ LG + Sbjct: 367 RLRSCIREGFATATAFSILYDKQRLGVYNLYFRRSQALSEQEIHLLETLGHHLGVAIENQ 426 Query: 348 QAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNA-TAQSIMADFS 406 + + ++L + EER +A+ELHDS+AQ L++L IQ+ LL+ S+ + A A Sbjct: 427 RLKSREKELAVSEERNLLAQELHDSIAQGLAFLNIQVQLLQDSLRKGKADEAMQTAGQLR 486 Query: 407 QALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQM 466 + + ++Y +RELL FR + Q+DL SA+ L+ + QT + + T L Sbjct: 487 EGVQESYDDVRELLVHFRTRVHQSDLDSAINAALEKFEGQTGIQTEFERIGATTPLPPTD 546 Query: 467 QVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEP----EGH 522 ++ ++ I++E++ N KHA A + V+ V G V + D+GIG +P + H Sbjct: 547 EIQIMHIVQESLSNIRKHAKAKRVRVT-VRQELGTSKVMVEDDGIGFDPQNDPNCLSDRH 605 Query: 523 YGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSA 558 GL IMRERA R+GG + G G+ V +S Sbjct: 606 VGLKIMRERAHRIGGECRITSNPGQGSCVILSLPKE 641 >UniRef50_Q7NV12 Transmembrane nitrate/nitrite sensor kinase transcription regulator protein n=1 Tax=Chromobacterium violaceum RepID=Q7NV12_CHRVO Length = 632 Score = 383 bits (985), Expect = e-105, Method: Composition-based stats. Identities = 140/604 (23%), Positives = 248/604 (41%), Gaps = 68/604 (11%) Query: 21 LSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQSGSPQ--LNAHRQLFQQAL 78 ++++S G L A AIN GSLRM+++R Y + + +P+ L F Q L Sbjct: 28 VALISIGYTLALSWRLEGGAAAINDVGSLRMRTFRAAYLMSTQAPERVLRDEVAGFDQTL 87 Query: 79 HSPVL-TNLNVWYVPE--AVKTRYAHLNANWLEMNNRL--SKGDLPWYQANINNYVNQID 133 ++P+ ++ + L W L + ++ +V +ID Sbjct: 88 ARLKRGDPARPLFLPDNRDIRDQERRLEQRWRNDIRPLLLAADGAQPSAQRLHGFVAEID 147 Query: 134 LFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHG 193 V L+ E L+ + + V+ P+ L A +R+ G Sbjct: 148 NLVSLLERDNENHTNLLRMFQMVLIAMALAGAVTMAYMLFLMVINPVRALSDAMRRLREG 207 Query: 194 QFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQC 253 + D+ + + +ELG+LA+ FNQM+ LY++LE+ V +KTR++ E RL+ LY Sbjct: 208 ELDTR-VKVDRQDELGMLAEGFNQMAERAQDLYQNLESKVAQKTREVEEQNLRLKTLYDM 266 Query: 254 SQALNTSQIDVHCFRHILQIVRDNEAAEY----------------------------LEL 285 + L+ + + ++ + A+ E Sbjct: 267 TSFLHQQRALDETCQGFIRRLMQLTGADAANARLVDPERGKLDQIAQQGLPAEMALNEEC 326 Query: 286 NVGENWRISEGQPNPELPMQ----------------------ILPVTMQETVYG--ELHW 321 + E P ++ + + Q G L++ Sbjct: 327 IPDDACHCGEAVQQPFAVLRHIGELEGEEIRHCRKAGFASIAVFHIRNQREDVGIFTLYF 386 Query: 322 QNSHVSS--SEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSY 379 + V S + L+ ++ LG + + +Q + EER +A+ LHDS+AQ LS+ Sbjct: 387 RQKRVLSMAEQMLIETLGQHLGVAIENQRLGAVERQFAVSEERNLMAQGLHDSIAQSLSF 446 Query: 380 LRIQLTLLKRSI-PEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALRE 438 L +Q +L+ ++ + A A+ +A + + Y +RELL FR + Q + P A+R Sbjct: 447 LNLQTQMLEDAMNSREEALARENLAFIRAGVQECYEDVRELLLNFRTRISQQEFPEAVRT 506 Query: 439 MLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAP 498 +L + QT L+ R LD Q Q+ + I++EA+ N KHA ASE+ V Sbjct: 507 LLQRFEQQTRVPARLEMRGEGKPLDPQQQLQVFFILQEALSNIRKHAEASEVEVEIDNT- 565 Query: 499 DGNHTVYIRDNGIGIGE---PKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 + ++ IRDNG G + H G++IM+ERA+R+ + GT V ++ Sbjct: 566 -ASFSMRIRDNGRGFDSGQLAAKSARHVGMSIMQERAKRIHSHIQIRSAPTQGTTVELTL 624 Query: 556 RSAE 559 E Sbjct: 625 PKEE 628 >UniRef50_C1D9F9 NarX n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D9F9_LARHH Length = 637 Score = 383 bits (985), Expect = e-105, Method: Composition-based stats. Identities = 157/627 (25%), Positives = 266/627 (42%), Gaps = 71/627 (11%) Query: 1 MIVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDL 60 M +R ++ L ++L+++S G L A AIN AGSLR ++Y L Y + Sbjct: 10 MPWQRSLATKLMLLSLLWLMLAMVSIGFTLHLSWKLEGGAAAINDAGSLRKRTYHLAYLI 69 Query: 61 QSGSP--QLNAHRQLFQQALHSPVL-TNLNVWYVPE--AVKTRYAHLNANWL-EMNNRLS 114 S +P ++ RQ F+ L++ ++P+ V A ++A W E++ + Sbjct: 70 ASHAPAARIEHERQDFRVTLNNLRQGDPARPLFLPDNPEVHRMAALIDARWQNEVHPYVQ 129 Query: 115 K---GDLPWYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRR 171 + G++ + + VN I+L V ++ R L+ + L Sbjct: 130 RALRGEIQLTAVDFEDVVNDINLLVHLIELDNARNTTLLRFFQTSLIAMALIGCVTMLYL 189 Query: 172 IRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEA 231 + V+ P+ QL +++ G + + +E G+L++ FN+M+ L LY +LE Sbjct: 190 LYLLVIQPVRQLGAGMRKLHDGDLGAR-VKVASRDEFGVLSEGFNEMARRLQDLYANLED 248 Query: 232 SVEEKTRDLHEAKRRLEVLYQCSQALN--TSQIDVHCFRHILQIVRDNEAAEYLEL---- 285 V EKT + E R+L LYQ + L+ +Q LQ V A+ L Sbjct: 249 KVREKTLSVEEKNRQLTALYQVTSFLHRPQTQTLDEMGEGFLQRVMALVGADAASLKFVD 308 Query: 286 ------------------NVGENWRISEGQPNPELPMQILPVT--MQETVYGELHWQN-- 323 NV E E P Q LPV + E G+ +N Sbjct: 309 AQRGKLDQIVSVGLPDSLNVHETCVSVEQCPCGAALKQALPVAVHLNEVCAGDWPCRNTG 368 Query: 324 ---------------------------SHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQL 356 S L+ +++S LG + + + +QL Sbjct: 369 FASLAVFHVRYHGQNVALLTLLFRTPRSVAEPDANLIETLASHLGTAIESRRLAERERQL 428 Query: 357 LLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPE-DNATAQSIMADFSQALNDAYRQ 415 + EER +A+ LHDS+AQ LS+L +Q+ +L+ ++ ++ AQ +A + + + Y Sbjct: 429 AVAEERNLMAQGLHDSIAQSLSFLNLQVQMLESALEAGESEAAQENLAFIREGVAECYED 488 Query: 416 LRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIR 475 +RELL FR + + + P A+R +L + Q L L L+ + Q+ ++ I++ Sbjct: 489 VRELLLNFRTRISKEEFPDAVRTLLARFEQQARVLTHLQLEGEGLPLNPEQQLQVIFILQ 548 Query: 476 EAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGE---PKEPEGHYGLNIMRERA 532 EA+ N KHA A ++ V+ D + I D+G G + H GL+IMRERA Sbjct: 549 EALSNIRKHAAAGKVEVNIRNGQD--FEMDIVDDGYGFDQSALAARQARHVGLSIMRERA 606 Query: 533 ERLGGTLTFSQPSGGGTLVSISFRSAE 559 R+ T+ G GT VS+ E Sbjct: 607 TRIAATVDIMSRPGEGTRVSLVLPHKE 633 >UniRef50_A9LZC9 Two-component system, NarL family, nitrate/nitrite sensor histidine kinase n=9 Tax=Neisseria RepID=A9LZC9_NEIM0 Length = 536 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 137/529 (25%), Positives = 231/529 (43%), Gaps = 26/529 (4%) Query: 49 LRMQSYRLGYDLQSGSP--QLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRY----AHL 102 +RMQ+YRL Y GSP Q++ F+++L+ ++ +P Y + L Sbjct: 1 MRMQAYRLAYMAGEGSPRSQIDNQVDEFEKSLNRISQSDAIHPLIPSDTPLAYDLIQSML 60 Query: 103 NANWLEMNNRLSKGDLPWYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIF 162 +W + Q ++ + I+LF+ AL++ E+ + A + Sbjct: 61 IIDWQAHILPPLQSYRRPTQVDLYRFAGNIELFLQALENANEKNTWWLRRFQWAIMLMTL 120 Query: 163 TLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSEL 222 L + V+ PL L ++RI FD P + P E + + FNQM L Sbjct: 121 VSSVLMLFWHQIWVIRPLQALREGAERIGRRCFDIPVPEGGTP-EFKQVGRCFNQMGGRL 179 Query: 223 HKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAE- 281 LY LE V E+TR L + + L +LYQ ++ L+ S I H L + A+ Sbjct: 180 KILYDDLEGQVAEQTRSLEKQNQNLTLLYQTTRDLHQSYIPQQAAEHFLNRILPAVGADS 239 Query: 282 -YLELNVGENWRISEGQPNPELPM--------QILPVTMQETVYGELHWQ----NSHVSS 328 + L+ G + +S + +I P+ Q G L S Sbjct: 240 GRVCLDGGSDVYVSIHHADCGTAASDLGKYHEEIFPIEYQNETLGRLLLSFPNGISLDED 299 Query: 329 SEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLK 388 LL ++ LG L + ++ + L +++ER IA+ LHDS+AQ L++L +Q+ +L+ Sbjct: 300 DRILLQTLGRQLGVSLAGAKQEEEKRLLAVLQERNLIAQGLHDSIAQALTFLNLQVQMLE 359 Query: 389 RSIPED-NATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQT 447 + E+ A + + + Y +RELL FR + + P A+ ++ QT Sbjct: 360 TAFAENKREEAAENIGFIKTGVQECYEDVRELLLNFRTKISNKEFPEAVADLFARFTQQT 419 Query: 448 SAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIR 507 + T Q+ ++ I++E++ N KHA A+ + + + G T+ I+ Sbjct: 420 GTTVETVWENGTHLPTQDEQLQMIFILQESLSNIRKHARATHVKFTL-SEHGGRFTMTIQ 478 Query: 508 DNGIGIGEPK--EPEG-HYGLNIMRERAERLGGTLTFSQPSGGGTLVSI 553 DNG G K EP G H GL+IM+ERA+R+ L GT VS+ Sbjct: 479 DNGQGFDTEKIGEPTGSHVGLHIMQERAKRIRAVLKIYSQPQQGTTVSL 527 >UniRef50_A1W358 Signal transduction histidine kinase, nitrate/nitrite-specific, NarQ n=7 Tax=Burkholderiales RepID=A1W358_ACISJ Length = 638 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 160/631 (25%), Positives = 255/631 (40%), Gaps = 69/631 (10%) Query: 1 MIVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDL 60 M K +S L +L+++ S G L A A+N AG LRM R+ Sbjct: 1 MRKKPTLSTKLLAMGTVFLLVALASIGFTLWVTWKLEGGAAAVNEAGRLRMNMLRMVLAQ 60 Query: 61 QSGSPQLNAHRQL-FQQALHS-PVLTNLNVWYVP--EAVKTRYAHLNANWLEMNNRLSKG 116 Q+ SPQ A + F + L +VP + + RY H+ WL + N Sbjct: 61 QNESPQEFARLETRFNEGLELLRTGDPARPLFVPWSDDTRERYEHIRRQWLLIENDWKAA 120 Query: 117 ----DLPWYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRI 172 A + +V +D FV A++ R ++ L + Sbjct: 121 AHYESSAEAVARADAFVLDLDSFVEAIEIQIVRLTAVLHLFHLFMVALAIGSAVAFMALS 180 Query: 173 RHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEAS 232 V+ P+ +L A R+ G + L+ +E G L FN M+ L + LE Sbjct: 181 YLLVLNPVTRLQQALARLRKGDLGTR-LEVEADDEFGQLTAGFNLMAHALQTSHEDLERK 239 Query: 233 VEEKTRDLHEAKRRLEVLYQCSQALNT----SQIDVHCFRHILQIVRDNEAAEYLELNVG 288 V EKT + +RL LY S ++ + I ++ + AA Sbjct: 240 VREKTATIEVRNQRLAALYAVSALAAEAGSLEELTQGFVQQIRRVAECDAAAVRWSDEAN 299 Query: 289 ENWR----------------------ISEGQPNPELPMQILPV----------------- 309 E + GQ + M+++P+ Sbjct: 300 ERYVLLASDGLPQSLVEHEHCVVTGACECGQAQGQARMRVIPIMPVGGLQLPHCREAGFE 359 Query: 310 -------TMQETVYGE--LHWQNSHVSSSE--PLLNSVSSMLGRGLYFNQAQKHFQQLLL 358 M + + GE L +++ S+E LL++++ L + +A ++ + Sbjct: 360 TVVSIPVQMHQRLLGEVTLLYRSPLELSAEMRELLSTMAHHLATSMESLRASALEREAAV 419 Query: 359 MEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSI-MADFSQALNDAYRQLR 417 +ER+ IARELHDS+AQ L++L+IQ LL+ ++ +DN A+ MA+ + + Y +R Sbjct: 420 AQERSLIARELHDSIAQSLAFLKIQTQLLRDAVAKDNTEARDRSMAELDTGVRECYADVR 479 Query: 418 ELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREA 477 ELL FR Q D+ +ALR L ++QT A L L L +Q+ +L I++EA Sbjct: 480 ELLVHFRTRTQDEDIEAALRATLSKFEHQTGAATALSMAGHGLPLAQDVQIQVLHILQEA 539 Query: 478 VLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEG--HYGLNIMRERAERL 535 + N KHA+A + + P ++D+G G P H GL IMRERA+R+ Sbjct: 540 LSNVRKHADARRVELRVQRHP--RWRFEVQDDGRGFDPDSVPPDSLHVGLGIMRERAQRI 597 Query: 536 GGTLTFSQPS-GGGTLVSISFRSAEGEESQL 565 G L GGGT V + EE L Sbjct: 598 GAHLELVSRPGGGGTCVVLELPPTTREEPAL 628 >UniRef50_A4G5M3 Putative Nitrate/nitrite sensor protein narX n=1 Tax=Herminiimonas arsenicoxydans RepID=A4G5M3_HERAR Length = 672 Score = 379 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 140/635 (22%), Positives = 244/635 (38%), Gaps = 85/635 (13%) Query: 7 VSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQSG--- 63 +S + +LL++ + G L+ A AIN AG +RMQSYRL L Sbjct: 37 LSNKIVAVLIGFLLLALSAIGTTLMLSWQLEGSAAAINEAGGVRMQSYRLTSVLARLLNE 96 Query: 64 --SPQLNAHRQLFQQALHSPVLTNL------NVWYVP--EAVKTRYAHLNANW------- 106 P H Q L Y+P + T +A + W Sbjct: 97 QIEPDELRHNAEQQIRAIDATFARLQRGDPQRPLYLPPTNNIHTVFAQVVERWDVELEPL 156 Query: 107 ----LEMNNRLSKGDLPWYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIF 162 L+ + D Y I+ +V ++ V ++ +E +M + + L Sbjct: 157 AYAILQKAQPDRRPDWDRYLTQIDGFVADVNNLVQLIERDSETRMFWLRSWQLVLVAMAL 216 Query: 163 TLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSEL 222 + + ++ P+ +L Q++ + L +E G L FNQM+ L Sbjct: 217 IGTVTMIYLMFLLIIQPVTRLQEGMQQMNGNKLGVR-LPVESKDEFGQLTLGFNQMADRL 275 Query: 223 HKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIV-----RDN 277 Y +LE V +KT +L + R L +LY + L Q LQ + D Sbjct: 276 ETSYNNLENRVRQKTAELEDQNRELALLYDSAAFLQRPQPMEMLCDGFLQRITQYFQADG 335 Query: 278 EAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETVYGE------------------- 318 + LE + + EL + + + + GE Sbjct: 336 GSVRVLEAARDNLHMVVHQGISKELVESEHCLKVGDCLCGEAAEKKISMVHNLQQMDQAH 395 Query: 319 ----------------------------LHWQNSHVSS--SEPLLNSVSSMLGRGLYFNQ 348 LH++ V LL ++ ++LG + + Sbjct: 396 ALQCHREGFATVSIFHIYAHEQHIGFFNLHFRQPRVFDKHEHALLEALGNLLGVAIENIR 455 Query: 349 AQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDN-ATAQSIMADFSQ 407 +++ + EER +A+ LHDS+AQ L++L +Q+ +L S+ + I+ Sbjct: 456 LAMREREMAISEERNLVAQGLHDSIAQGLTFLNLQVQMLDDSLQKGRLKEVAEIVPALRA 515 Query: 408 ALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQ 467 +N++Y +RELL FR L + DL ++L+ +D + Q+ + L + Q Sbjct: 516 GVNESYEDIRELLLNFRSRLIKGDLINSLQTTIDKFRRQSGITVNFVASGDGAPLPYEQQ 575 Query: 468 VHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEP---KEPEGHYG 524 + ++ I++EA+ N KHA+AS++ + D ++ I DNG G + E H G Sbjct: 576 LQIMFIVQEALSNIRKHASASKVEIRLQDNQD--FSLSIHDNGGGFDADTLLSKGESHVG 633 Query: 525 LNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAE 559 +NIMRERA+R+ + GT V + A+ Sbjct: 634 INIMRERAQRIHASFEVHSTPLQGTTVRLQLARAQ 668 >UniRef50_C4KA07 GAF sensor signal transduction histidine kinase n=2 Tax=Betaproteobacteria RepID=C4KA07_THASP Length = 655 Score = 377 bits (968), Expect = e-103, Method: Composition-based stats. Identities = 154/643 (23%), Positives = 263/643 (40%), Gaps = 88/643 (13%) Query: 1 MIVKRP-VSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYD 59 M ++ +S + L+++ + + L A AIN AGSLRM+ YR+ + Sbjct: 9 MFIRGSGLSVKITGMLLGFFLVALAAIALTLFISWRLEGAAAAINDAGSLRMRLYRVAHH 68 Query: 60 LQSG----------SPQLNAHRQLFQQALHSPVL-TNLNVWYVPE--AVKTRYAHLNANW 106 L + L A F + L +VP ++ + ++ W Sbjct: 69 LARADLHTSDRQGFAGDLRARVDDFDRILGVLRRGDPSRPLFVPREAGIQQVLSGMSEEW 128 Query: 107 L-EMNNRLSKGDLPWYQANIN-----------NYVNQIDLFVLALQHYAERKMLLVVAIS 154 ++ L AN++ +YV I+ FVL ++ R ++ Sbjct: 129 SVQLRPILLAIAADPDPANLHRRGLEFDRAARDYVEDINDFVLRMEQSYARNTNILRTSQ 188 Query: 155 LAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKT 214 + LR V+ P+ +L +R+ FD+ + +E G L+ Sbjct: 189 VILVALAVIGTILLLRFFFLTVIRPVFELHEGVKRMGQEDFDAR-VPVLSQDEFGELSAG 247 Query: 215 FNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQAL----------------- 257 FN+M++ L +Y +LE V KTR L E R LE+LY+ L Sbjct: 248 FNRMAAHLQNVYDTLEERVVAKTRSLEEKNRELEILYEIVAFLREPNDVDTLCKGFLERV 307 Query: 258 --------NTSQIDVHCFRHILQIVRDNEAAEYL---ELNVGENWRISEGQPNPELPMQI 306 +++++ R++ IV D ++L E+ E L + + Sbjct: 308 QKTMGASASSARLLDLESRNLCMIVHDGLGDDFLDREEVLACGECVCGEAAQGSGLSLTL 367 Query: 307 ------------------------LPVTMQETVYG--ELHWQNSHV--SSSEPLLNSVSS 338 +T + G L++ + LL ++ Sbjct: 368 DVRNAALAVTRDACRRAGFRTVSATSITASKRALGVFNLYFDQPDAIGDADRQLLEALGQ 427 Query: 339 MLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNAT- 397 LG + + ++L + EER +ARELHDS+AQ L++L +Q+ +L+R++ E+ A Sbjct: 428 QLGIAIENQRLHARERELAVSEERNLLARELHDSIAQGLAFLNLQVQMLERALAENRAAD 487 Query: 398 AQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRL 457 + + + + ++Y +RELL FR ++Q DL +A+ L L QT LD + Sbjct: 488 VSTTVEMLRRGIQESYEDVRELLVHFRTRVEQQDLDAAIAAALRRLAEQTGIATDLDVQG 547 Query: 458 PTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPK 517 LD + + +L II+EA+ N KHA AS ++V DG V +RD+G+G E + Sbjct: 548 DGAPLDPEAETQVLYIIQEALSNVRKHAGASTVSVGVRRGRDG-LAVTVRDDGVGFAEDR 606 Query: 518 EP---EGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRS 557 + E H GL IMRERA R+GG G GT + + Sbjct: 607 DASDSEAHIGLQIMRERAMRIGGRFAVRSSPGRGTEIRLELPR 649 >UniRef50_C4K985 Histidine kinase n=1 Tax=Thauera sp. MZ1T RepID=C4K985_THASP Length = 637 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 163/612 (26%), Positives = 269/612 (43%), Gaps = 58/612 (9%) Query: 1 MIVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDL 60 ++V+R + ++ A + L+ + + + + S +AI +A +LR + R+ + Sbjct: 8 LLVRRSIMLLVSVALVAMTLIGLAGMSASFVVVDRSRDSVQAIAVASTLRGHTQRIANLI 67 Query: 61 QSG--------SPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANW-LEMNN 111 S + A ++ L L E Y + A W + Sbjct: 68 AIDALKGRIGVSERTRAAMADIERELQQAALRRFVDEAPGELFAATYRGVQAGWERSVRP 127 Query: 112 RLSK---------GDLPWYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIF 162 R+ ++ A ++++V Q+D V L ER++ + I Sbjct: 128 RIEALAGPVPPDAREVETLLAGVDDFVGQVDSLVAVLGQENERRIDELRRILALAAAVTL 187 Query: 163 TLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSEL 222 +V + ++ ++ PL L+ A++RI G F T +ELG + FN M+ EL Sbjct: 188 GVVLVVIVLLQRALLRPLGGLLDAARRIAGGDFGVRVRYT-GEDELGQVGSAFNLMADEL 246 Query: 223 HKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIV-------- 274 + Y LE V EKT +L + R LE+LY L + + L+ + Sbjct: 247 ARHYHLLELRVTEKTAELQRSNRSLELLYHAIARLYQAPSAPDAYEATLRDIDRVAGLEG 306 Query: 275 -------RDNEAAEYLELNVGEN-WRISEGQPNPELP---------------MQILPVTM 311 R A + ++G R G+ + P+ Sbjct: 307 SFVCIEPRPGAPAAVIASSMGPCPDRAERGEDACAACRAGSEGQALALLSPTLLRFPLRD 366 Query: 312 QETVYGELHWQNSHVS----SSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIAR 367 +E +G L S + L+ ++S +G L + + + L L EER+ IAR Sbjct: 367 REHHHGMLRLSLSDGARLEDWQRQLVEALSRHIGMALGAARRTEQERLLALQEERSVIAR 426 Query: 368 ELHDSLAQVLSYLRIQLTLLKRSI--PEDNATAQSIMADFSQALNDAYRQLRELLTTFRL 425 ELHDSLAQ LSY++IQ++LL+R++ P A A+ I+AD + ++ AYRQLRELL +FRL Sbjct: 427 ELHDSLAQALSYMKIQVSLLQRALADPARTAEAEPILADLREGISAAYRQLRELLVSFRL 486 Query: 426 TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHA 485 L ADL + + + + ++ L L L +VH+LQI+REA+ N ++HA Sbjct: 487 GL-SADLATLMEDAAREYGTRGGLEVELAVELGACQLSPNQEVHVLQIVREALSNMVRHA 545 Query: 486 NASEIAVSCVTAPDGNHTVYIRDNGIGIG-EPKEPEGHYGLNIMRERAERLGGTLTFSQP 544 +A V+ DG + +RD+G GIG P + H+GL IMRERA +GG + Sbjct: 546 SARHAWVALRGGADGEVLLEVRDDGCGIGAPPADARNHHGLAIMRERARSMGGEIDIGPA 605 Query: 545 SGGGTLVSISFR 556 GT V + FR Sbjct: 606 LPSGTRVCVRFR 617 >UniRef50_C0DXB9 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DXB9_EIKCO Length = 632 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 135/628 (21%), Positives = 252/628 (40%), Gaps = 77/628 (12%) Query: 5 RPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQS-- 62 + +S L +++++ S LL A AIN GSLR++S+R+ ++ Sbjct: 5 KSLSVRLKLLTLLWLVIAVASISYTLLLSWRLEGSAAAINDIGSLRLRSFRIALLIRENA 64 Query: 63 GSPQLNAHRQLFQQALHS-PVLTNLNVWYVPEA--VKTRYAHLNANW-LEMNNRLS---K 115 G+ ++ Q + L + ++P V R+ L+ W + + Sbjct: 65 GAEEIEQRLQQYDSILDNVRHGDRSRPLFLPPDKVVWQRFNELDQQWRQNIRPAFQVAYQ 124 Query: 116 GDLPWYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQ 175 + P + +++++D V A++ R + + + + F + + Sbjct: 125 QNRPVTDKQLQPFLSRLDNLVSAVEQTNTRYISWLRLFQSCLLVLVVMSSAFMVFLLYWW 184 Query: 176 VVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEE 235 ++ PL L I GQF + + E + FNQMSS LH+LY LE V E Sbjct: 185 IIKPLQHLQQGVAAIHDGQFG-IQIPIDHSAEFARVDNGFNQMSSSLHQLYSHLEEEVLE 243 Query: 236 KTRDLHEAKRRLEVLYQCSQALNTSQIDVHC----FRHILQIVRDNEAAEYL-------- 283 KTRDL LE LY S+ L+ +Q + +L++V + + L Sbjct: 244 KTRDLASKHHTLETLYFFSRFLSQTQTTTEAAEVFLQKMLEMVAADAGSIRLIDFKRQRM 303 Query: 284 ---------------------------ELNVGENWRI----------------SEGQPNP 300 V ++W+ SE Sbjct: 304 DLVSQINLPDSLQTAEACQRFDDCLCGHAVVHDDWQPIQFVREPDSHAFDTDNSECSRMG 363 Query: 301 ELPMQILPVTMQETVYG--ELHWQNSHVSS--SEPLLNSVSSMLGRGLYFNQAQKHFQQL 356 ++I + + +G L+++ + L ++ S G + + +QL Sbjct: 364 FQQLRIFKIQYKAQDFGMVTLYFKQKEPVAMADTELWEALCSQFGVVVSNLRLIDESRQL 423 Query: 357 LLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIP-EDNATAQSIMADFSQALNDAYRQ 415 +++ER IA+ LHDS+AQ L++L +Q+ +L+ ++ + + + + Y Sbjct: 424 AVLQERNLIAQGLHDSIAQALTFLNLQVQMLESALQNHEQEQINENLHYIKDGIQECYDD 483 Query: 416 LRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIR 475 +RELL FR + D ++ + D Q QT + L L+++ Q+ ++ I++ Sbjct: 484 VRELLINFRTKINNKDFTEVVQTLTDRFQRQTQIGVHLHWHGNGPQLNSEQQLQVVFILQ 543 Query: 476 EAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPE----GHYGLNIMRER 531 E++ N KH+ A+++ + D + I DNG G + E H GLNIM ER Sbjct: 544 ESLSNIRKHSQATQVDIRFNNRQD--FVMEIEDNGRGFNIERLKEQHSGNHVGLNIMHER 601 Query: 532 AERLGGTLTFSQPSGGGTLVSISFRSAE 559 A+R+ L+ G T V+++ E Sbjct: 602 AQRIRAQLSLHSKPGS-TRVTLNLPYEE 628 >UniRef50_A5WD78 Integral membrane sensor signal transduction histidine kinase n=1 Tax=Psychrobacter sp. PRwf-1 RepID=A5WD78_PSYWF Length = 640 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 154/633 (24%), Positives = 275/633 (43%), Gaps = 84/633 (13%) Query: 6 PVSASLA-RAFFYIVLLSILSTGIAL---LTLASSLRDAEAINIAGSLRMQSYRLGYDLQ 61 P+ +LA R++ L+ +L G AL ++ DA+AIN AGS+RM +YR+ + L Sbjct: 2 PIPNTLAVRSWIATTLIILLFLGTALSSGFLAWAAQNDAKAINTAGSIRMATYRMNFLLV 61 Query: 62 -------------SGSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLE 108 S Q+N Q + + ++ W + Sbjct: 62 ANQSSAELRAADISSVQQINQLIDDMNQRQSLLQHYQSQRTNKDTRIYRQIERIHQGWTQ 121 Query: 109 -MNNRLSKGDLPWYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFF 167 + L D + Y+ Q+D V LQ+ E++ + L + ++ Sbjct: 122 TLMPLLLARDSVGFYKASLPYIQQVDAVVSQLQYRNEQRQNRQQLLQLISMSLMILIMIG 181 Query: 168 TLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYR 227 + +R +V+ P+ +L+ A G+ ++ T E L ++FN M S + + + Sbjct: 182 GIYELRKKVLLPVKKLMQAKAAFTSGKLETRVHLTGYK-EFEELGRSFNDMVSTIEQNKQ 240 Query: 228 SLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQI-------------- 273 LE + KT L +A + L +LY ++ L TSQ+ + ++ Sbjct: 241 FLERQIALKTAHLTQANQVLSLLYDFAKYLTTSQVSITELNRLIADFGKIIPELEFTLCI 300 Query: 274 ---VRDNEAAEYLELNVGENWRISEGQPNPELPM----QILPVTMQETVYGELHWQNS-- 324 + DN+ A + + + + + + + + Q++ +G+L + Sbjct: 301 KGDLIDNKDAIAIHSSELRDLCSTTTCDSCLIKSSFYTESFLIRHQKSQFGDLRVRPKSL 360 Query: 325 -----------------------------------HVSSSEPLLNSVSSMLGRGLYFNQA 349 +++++P + ++++++ ++ Q Sbjct: 361 GISRPTEQATPSENRIPLVQVAQLDSMIDDTETQVLIANNKPAITALTNLISTAMFLLQQ 420 Query: 350 QKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPE------DNATAQSIMA 403 ++ Q++L+EERATIARELHDSLAQ LSYL+IQ T+L++ + D A + Sbjct: 421 RQQEHQIILLEERATIARELHDSLAQSLSYLKIQTTILEKRLQHTHCDSPDLALVSDSIG 480 Query: 404 DFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALD 463 L AY+ LR+LL TFRL+L AL + + + + ++ +L L Sbjct: 481 KLKDGLTSAYQHLRDLLVTFRLSLNDDSFDEALHNSAEEFAKKGGFNVKVSNQVISLNLS 540 Query: 464 AQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHT-VYIRDNGIGIGEPKEPEGH 522 A QV+++QI+REA+ N +HANA + V+ D N T + I D+G G+ + H Sbjct: 541 ASEQVNVIQIVREALSNICRHANAKNVTVNFGYIADSNDTLLSISDDGKGLSGSFDQTHH 600 Query: 523 YGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 +GL IM+ERA+ LGG LT S GT+V F Sbjct: 601 HGLMIMQERAKSLGGQLTVSNNEPTGTVVEARF 633 >UniRef50_Q46R21 GAF:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase, dimerisation and phosphoacceptor region n=41 Tax=Burkholderiales RepID=Q46R21_RALEJ Length = 675 Score = 364 bits (936), Expect = 3e-99, Method: Composition-based stats. Identities = 145/628 (23%), Positives = 248/628 (39%), Gaps = 75/628 (11%) Query: 4 KRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDL--- 60 + +S + +L+ + L AIN AGSLRM++ R+ +L Sbjct: 27 RHRLSTRIILLSLASLLVVLTMIAGTLWLSWKLEGAGAAINDAGSLRMRANRVAIELGLA 86 Query: 61 -QSGSPQLNAHRQLFQQALHS-PVLTNLNVWYVPEA--VKTRYAHLNANWL-EMNNRLSK 115 + +A Q L + ++P+ + + + +W E+ Sbjct: 87 NAGQAGARDAQIQALDGTLAQLRKGNPVRPLFLPDEPAIHEQLDRVAYDWQHELRPLAQA 146 Query: 116 GDLPWYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQ 175 G Y + +V + D V+ ++H + RK L+ + + Sbjct: 147 GSGVAYVQALPAFVAEADRLVMLIEHDSARKTDLLRLSQAGLAAIACVGTVAVIYLLYLW 206 Query: 176 VVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEE 235 ++ P+ +L +R+ +F L +E G L FN+M++EL LY+ L A V Sbjct: 207 IILPVLRLQDGLRRMAAREFSLR-LPVETRDEFGTLNAGFNRMAAELQDLYQDLAARVAS 265 Query: 236 KTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGE------ 289 KT +L R LE LY + LN ++ R L+ V A+ + V + Sbjct: 266 KTAELERQNRDLETLYDMAAFLNQARDAEAMARGFLERVMGQFDADGGSVRVMDAQHGKL 325 Query: 290 NWRISEGQPN------------------------------------------------PE 301 + S G P Sbjct: 326 HLLASAGLPAALAESGNCMAVDACHCGDATREGVVAIADLRRTTRRPLLPQPSPCTREGF 385 Query: 302 LPMQILPVTMQETVYGE--LHWQNSH--VSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLL 357 + + Q G LH+ S LL++++ LG L + +QL Sbjct: 386 TAIAAFRIESQRGAIGTFALHFHAPRELPPSDRQLLDTLAQHLGIALEHLRLSASARQLA 445 Query: 358 LMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDN-ATAQSIMADFSQALNDAYRQL 416 ++EER +A+ LHDS+AQ L++L +Q+ LL ++ D+ A A+ I+ + ++Y+ + Sbjct: 446 VVEERNLVAQGLHDSIAQGLNFLNLQVQLLGDAVDRDDLAEAREIVPMLRHGVEESYQDV 505 Query: 417 RELLTTFRLTLQQADLPSALREMLDTLQN--QTSAKLTLDCRLPTLALDAQMQVHLLQII 474 RELL FR L +L A+ E ++ + +T A L +D L L + Q+ +L I+ Sbjct: 506 RELLNNFRSRLTPGELRPAVEETVERFRRQCRTEATLVIDDHGNRLPLQPEQQLQVLFIL 565 Query: 475 REAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEP---KEPEGHYGLNIMRER 531 +EA+ N KHA A+ + VS D + + D+G G ++ E H GLNIMRER Sbjct: 566 QEALSNVRKHAMAAHVTVSLCHGHD--FRLVVEDDGEGFDPAELGRDSEAHVGLNIMRER 623 Query: 532 AERLGGTLTFSQPSGGGTLVSISFRSAE 559 A RL L G G + + + Sbjct: 624 AARLHARLAIDARPGRGVRIELVLPHGD 651 >UniRef50_B9Z081 Multi-sensor signal transduction histidine kinase n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z081_9NEIS Length = 645 Score = 358 bits (919), Expect = 3e-97, Method: Composition-based stats. Identities = 144/628 (22%), Positives = 247/628 (39%), Gaps = 78/628 (12%) Query: 7 VSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQSGSP- 65 +SA + A ++L+++ + G L A AIN AGSLRM++ RL D+Q Sbjct: 17 LSAKIIGALLAVLLMALSAIGATLWLSWQLEGGAAAINDAGSLRMRATRLSLDVQRFHDG 76 Query: 66 -----QLNAHRQLFQQALHSPVLTN-LNVWYVPE--AVKTRYAHLNANWLEMNNRL---- 113 + + Q L + VP + + ++ W L Sbjct: 77 KLPREVVQNSIVRYDQTLAVLRRGDSARPLLVPRTAKILLDFKNVADQWHGRIRPLGQAI 136 Query: 114 -------SKGDLPWYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVF 166 S + +Q+ ++YV+ I+ FV ++ Y R + L Sbjct: 137 LAAGSEASPQSIARFQSMTSDYVDLINRFVADMEAYNARNTEYLRYCQLMLAALAVVGTV 196 Query: 167 FTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLY 226 + + V+ PL++L Q + GQ D + +E +++ FN M+ L + Sbjct: 197 ALIYMMMLLVLNPLDKLHQGIQLLAEGQLD-VSVPVESDDEFAQVSQGFNLMAQRLAEAR 255 Query: 227 RSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAE----- 281 +LE V KT L + + L +LY+ S LN Q + L V A+ Sbjct: 256 ATLEERVRAKTASLQQKNKELALLYEISAFLNQPQSLESLCQGFLAKVMAAYRADGGAVR 315 Query: 282 --------------------------------YLELNVGENWRIS----------EGQPN 299 L V E+ Sbjct: 316 LTDHEQGIVYVVADQGMPEALLKEEHCMRVGDCLCGEVAEHSSSRVETLSVADNKSCSRE 375 Query: 300 PELPMQILPVTMQETVYG--ELHWQNSHV--SSSEPLLNSVSSMLGRGLYFNQAQKHFQQ 355 + P+T+Q G LH++ S + LL + L + + ++ Sbjct: 376 GYRVISAFPITVQGRSLGLFNLHYRQSVIMTPQQTRLLEVLGQNLAVAIENQRLFAKERE 435 Query: 356 LLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIP-EDNATAQSIMADFSQALNDAYR 414 L ++EER +A+ LHDS+AQ LS+L +Q +L++++ D + + ++Y Sbjct: 436 LAVLEERNLVAQGLHDSIAQGLSFLNLQAQMLRQALQLGDKELLDDTVGLIETGIKESYD 495 Query: 415 QLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQII 474 +RELL FR L + L A+ +L+ + QT K+ L T+ L + Q+ +L I+ Sbjct: 496 DVRELLNNFRSKLSE-SLMQAISTVLERFRRQTGIKVELRSEGLTVPLMPEQQLQILFIL 554 Query: 475 REAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIG---EPKEPEGHYGLNIMRER 531 +E + N KHA A+++ V + I+DNG+G + + H+GL+IM+ER Sbjct: 555 QEVLSNVRKHAQATQVVVHL-KDDGSAFELDIKDNGVGFAMATVAGKADTHFGLSIMKER 613 Query: 532 AERLGGTLTFSQPSGGGTLVSISFRSAE 559 A R G L S G GT V + A+ Sbjct: 614 AARAGVALRISSQPGRGTSVHLHLPRAQ 641 >UniRef50_C0DXM5 Sensor protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DXM5_EIKCO Length = 619 Score = 336 bits (861), Expect = 2e-90, Method: Composition-based stats. Identities = 137/598 (22%), Positives = 232/598 (38%), Gaps = 49/598 (8%) Query: 3 VKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRL--GYDL 60 ++R +SA L A +L + ++ A AI G L Q +RL Sbjct: 23 LRRSLSARLLTAILLWAGGLLLFVSMTVVATWRLEERAGAIRQTGRLNDQVHRLTMAAVQ 82 Query: 61 QSGSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPW 120 G+P + L+S W+ E + + + +K D Sbjct: 83 NPGAPLPVQQVADTLKGLNSRQHAVCCTWW-DEPASHQLEQVRRDTEAFLQTAAKPDTAA 141 Query: 121 YQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPL 180 ID + L+ R + + + + + I + R +R V+ PL Sbjct: 142 LLEQAERLHTGIDTYARLLEEQNTRSIGWLRSGRIGLMLLILLSAAVSFRLLRQVVLRPL 201 Query: 181 NQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDL 240 L A +I HG+ + +N +E +A FN+M+ L ++Y LE V EKT L Sbjct: 202 GTLYQAMNQITHGRLGTRIAGSNSGDEFEAVADGFNRMADNLQEMYAHLEDKVAEKTAAL 261 Query: 241 HEAKRRLEVLYQCSQALNT----SQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEG 296 K E+LY + L+ S+++ +L++ + G G Sbjct: 262 SRQKSEWEMLYYVTSYLHKQSFGSEVEQAFLERMLRLSHSGGGGIFWLAEKGFTTACDIG 321 Query: 297 QPNPELPMQILPVTM---QETVYGELHWQNSH---------------------------- 325 E + LP T QE+ G + W Sbjct: 322 L--LEGLAERLPHTHTAEQESEAGNMVWMQGEEGALVALVPIYALGGFQGWLALSKPTVP 379 Query: 326 --VSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQ 383 + + L+ + + LG QQ ++EER+ IAR LHDSLAQ LS++ ++ Sbjct: 380 LLSAQNTGLMRLLCTQLGIARENAAMTLLKQQNAVLEERSRIARSLHDSLAQSLSFINMR 439 Query: 384 LTLL-KRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDT 442 +L K + D+ + + + + Y +RELL FR Q + +R +++ Sbjct: 440 FQMLSKNKLLPDDKSVRDNIEMIRDGIQYCYEDVRELLDHFRAKPQYGNFAETVRSVIER 499 Query: 443 LQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNH 502 + Q + L L+++ Q L I++EA+ N KHA+A + V + DG Sbjct: 500 SRKQAGIPVVLHISGGDCLLNSEQQTQALFILQEALSNIRKHADAQQAEV-LLENGDG-F 557 Query: 503 TVYIRDNGIGIGE----PKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFR 556 T+ +RD+G G EP H GL++M ERAE++G ++ G GT V + Sbjct: 558 TIIVRDDGQGFDPESRAEAEPGQHIGLSVMHERAEKIGAEISIRSRPGSGTEVRLHIP 615 >UniRef50_B8GUD0 GAF sensor signal transduction histidine kinase n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GUD0_THISH Length = 550 Score = 298 bits (763), Expect = 4e-79, Method: Composition-based stats. Identities = 110/468 (23%), Positives = 193/468 (41%), Gaps = 58/468 (12%) Query: 150 VVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELG 209 ++ I + + I H ++ PL L +QR G + + E Sbjct: 67 LLGIQSLFLVAGLAVTLTLPVLIYHHLITPLFHLRHWAQRARGGNLAAR-IPIPSTGEFA 125 Query: 210 LLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRH 269 LA+ N ++ +L +L R + V +T L + LEVLY + ++NTS+ Sbjct: 126 ELAQDVNALTEQLQRLTREMRDEVSAQTERLEQKSHTLEVLYDVAASINTSRDLDDLLTR 185 Query: 270 IL---QIVRDNEAAEYLELNVGENWRISEG---QPNPELPMQILPV-------------- 309 L + +AA + + R+ +P+ + Q+LP+ Sbjct: 186 FLTSLKHALGAQAATARLVTPDGHMRLVANLGFEPDDQRCRQVLPLGKCMCGRVADGGDL 245 Query: 310 ------------------------------TMQETVYGE----LH-WQNSHVSSSEPLLN 334 + G LH W + LL Sbjct: 246 SWKADIRQCGRVTSDCDTQEDEPAMITIPLQHRGKTLGVYSLFLHEWPEHLNEDMDNLLT 305 Query: 335 SVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPED 394 S+ LG + + + Q+L ++EER +A ELHDSLAQ L+ LR ++ L + + Sbjct: 306 SIGRHLGMAIEKARVDEEAQRLGIIEERTHLAHELHDSLAQTLATLRFRVRALDETAQDA 365 Query: 395 NATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLD 454 +A + + LN A +LR L++ FR ++ +A+ +M++TL+ +T + L Sbjct: 366 SAETRREIDQIKDVLNRANVELRALISHFRAPMEPQGFVAAVEKMVETLRRETGISVYLQ 425 Query: 455 CRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIG 514 L A+M+ +L+I++EA+ N KHA A + V +G V + D+G+G+ Sbjct: 426 KEWRPRKLPAEMETEVLRIVQEALCNIRKHAQAQHVRVLLRNDAEGECMVMVEDDGLGLQ 485 Query: 515 EPKE--PEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEG 560 ++ P H GL++M ERA RL G GT +S++F + Sbjct: 486 PAEQGAPGEHIGLSVMTERAARLDADFRIESEPGEGTRISLAFHYPKP 533 >UniRef50_Q2Y9N2 Periplasmic sensor signal transduction histidine kinase n=1 Tax=Nitrosospira multiformis ATCC 25196 RepID=Q2Y9N2_NITMU Length = 692 Score = 275 bits (703), Expect = 4e-72, Method: Composition-based stats. Identities = 104/474 (21%), Positives = 189/474 (39%), Gaps = 60/474 (12%) Query: 132 IDLFVLALQHYAERKMLLVVA-----ISLAGGIGIFTLVFFTL--RRIRHQVVAPLNQLV 184 I+ F+L L K+ + I L + F L F TL R ++ PL+ L Sbjct: 197 INQFMLELDTRTRNKLSNLQLKFEQQILLILVVLCFALFFATLATFYTRRNILLPLDYLR 256 Query: 185 TASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLY---RSLEASVEEKTRDL- 240 I G + + + NE+ L FN M+ + R +E S+ E+ +++ Sbjct: 257 RQVSGIAQGNYSTR-CAISTRNEIAELGAGFNSMAEAIEHEIIKLRQVEESLRERLKEIN 315 Query: 241 --HEAKRRLEV--LYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEG 296 + +R +E L + + T I F H+ + + + E + Sbjct: 316 CFYSIRRGMESSSLEEVCDTIATELIAAMQFPHLAGVKIEMDGKELVS------------ 363 Query: 297 QPNPELPMQILPVTMQETVYGE------LHWQNSH---VSSSEPLLNSVSSMLGRGLYFN 347 +P + + Q TV+GE L ++ + + L++ + LGR L Sbjct: 364 --DPYHGNHVHELQKQITVHGEIRGWIKLFYRGDRFFLLPEEQNLIDVIGDDLGRWLEHQ 421 Query: 348 QAQKHF---QQLLL----------------MEERATIARELHDSLAQVLSYLRIQLTLLK 388 Q + Q+L + E+R IARE+HD L Q+L+ L ++++LL+ Sbjct: 422 QTEARVLVEQELRVRDAAIREFAAHLERMREEDRKYIAREIHDELGQLLAALHLEISLLR 481 Query: 389 RSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTS 448 + + ++I + ++ + A + + + R + SAL ++ + T Sbjct: 482 SAKDHGSERLETIRHNMAELVEKAGQSVHNVAEHLRPASLGLGIESALTKLTSEFKKHTG 541 Query: 449 AKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRD 508 L + LD V + +I++E++ N +H+ A+ + + D V I D Sbjct: 542 IYCDLRLPEEPVNLDEDQTVAIFRIVQESLTNVTRHSGANRVEIRLFREKD-EVIVEICD 600 Query: 509 NGIGIGEPKEPEG-HYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGE 561 NG G +G +GL MRERA L G + + G G LV +S E Sbjct: 601 NGRGFDPESAKKGKSFGLVGMRERAAALRGYIAITSGPGQGALVRVSIPLRRNE 654 >UniRef50_D2T798 Sensor for nitrate reductase system, protein histidine kinase (Acts on NarP and NarL) n=2 Tax=Erwinia pyrifoliae RepID=D2T798_ERWPY Length = 326 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 133/324 (41%), Positives = 192/324 (59%), Gaps = 4/324 (1%) Query: 235 EKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRIS 294 K ++ +A RRL +L CS+ L+ S F+ L +V +E +LEL+ E +S Sbjct: 1 MKHANVRQANRRLRLLIACSELLSHSTQGQRAFQQTLALVVSHEKLAWLELSAPEFGVLS 60 Query: 295 EGQPNPELPMQILPVTMQETV-YGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHF 353 G+ + L + G+L WQ + P++ S+++ML L + Q+ Sbjct: 61 AGKKAGQTRWHSLSLRHPSRPPGGKLRWQGAR--PLRPIIKSLAAMLANALERWRNQQQI 118 Query: 354 QQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAY 413 LL+ +ERATIA ELHDSLAQ L++ RIQL L+R+I D+ TA I+A Q+L A Sbjct: 119 HGLLIQQERATIAAELHDSLAQELTFQRIQLVRLRRAIEPDDTTALDIVAGMEQSLTGAS 178 Query: 414 RQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQI 473 RQLRELL FRLT+ A L AL + + L Q+SA +TL C+ L AQ Q+H++ I Sbjct: 179 RQLRELLNNFRLTVAPASLAHALEQAVAPLHQQSSAHITLACQFSG-QLAAQQQIHVVHI 237 Query: 474 IREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAE 533 +REA++NA++HA+A+EI+V P G + I+DNG+GI +EP+GH+GLNIM ERA Sbjct: 238 VREALVNAVRHASATEISVGSRPLPQGGIAITIKDNGVGIASLEEPDGHHGLNIMNERAA 297 Query: 534 RLGGTLTFSQPSGGGTLVSISFRS 557 RL GTL + + GGT VS+ F Sbjct: 298 RLNGTLLIERHAKGGTSVSLHFTP 321 >UniRef50_C5SBA0 Histidine kinase n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SBA0_CHRVI Length = 554 Score = 247 bits (632), Expect = 7e-64, Method: Composition-based stats. Identities = 103/420 (24%), Positives = 174/420 (41%), Gaps = 63/420 (15%) Query: 199 PLDTNLPNELGLL---AKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQ 255 P ++ E G+L A+ ++ EL LY ++ V +TR L + L++LY + Sbjct: 114 PGASDTLTETGVLQGIAQDIRSLNEELTDLYDDMDNRVARQTRRLAQKTASLKILYDVAA 173 Query: 256 ALNTSQIDVHCFRHILQIVRD--NEAAEYLELNVGENWRISEG----------------- 296 ++ ++ L+++++ N A + L + + R G Sbjct: 174 GIHQAESVEALLLRFLRVLKEMINARAATVRLVLPDGTRRLIGSIGLNDDLVRESDMTPV 233 Query: 297 -------------------------------QPNPELPMQILPVTMQETVYG--ELHWQN 323 + E+ + +P+ ++ G L Sbjct: 234 DLCLCGNVLAPGDILCDNDARYCSRIYGRRMFASSEVEVVTVPLEHRDERLGVYTLFVDR 293 Query: 324 SHVSSSEPLLN---SVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYL 380 + E +L +V LG + ++ +L ++EER +A ELHDSLAQ L+ L Sbjct: 294 PGLQGREDILELLFTVGHHLGVAIAKQRSDAEAHRLSIVEERNALAHELHDSLAQTLASL 353 Query: 381 RIQLTLLKRSIP--EDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALRE 438 R Q +L S+ A A++ +A L++A+ +LRELL +FR L + L AL + Sbjct: 354 RFQCRMLDDSLAGCPIPAEARNDLARIRNGLDEAHTELRELLASFRAPLDRRGLVPALAK 413 Query: 439 MLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAP 498 + L +T + L A ++ LL+I +EA+ N KHA A + V Sbjct: 414 LTQRLGRETGTHVLFQNDSRPFELSATEELQLLRIAQEALANIRKHAQAHTVRVLLTRES 473 Query: 499 DGNHTVYIRDNGIGIGEPKE---PEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 G H + I D+G+G P P GL+I+ ERA R+G L G GT V + F Sbjct: 474 GGRHVLLIEDDGVGFSPPDAQSPPGERIGLSILEERARRIGAELRIESEPGEGTRVEVVF 533 >UniRef50_C0N1R0 Histidine kinase domain protein n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N1R0_9GAMM Length = 615 Score = 247 bits (631), Expect = 8e-64, Method: Composition-based stats. Identities = 121/594 (20%), Positives = 227/594 (38%), Gaps = 48/594 (8%) Query: 2 IVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQ 61 +R + A L I L +L + L A+ ++ +R +L Sbjct: 24 FSRRTLYAKLMLLLLCISLTVLLMQAGTIFLLDYIPSSQAALEKIAIQKVYWHRQIANLD 83 Query: 62 SGSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDL--- 118 S + Q +W + + A + E N L Sbjct: 84 SDNGDKAGETLKAMQQQALDTSDPDVLWMLRQDSPDVVAAVRQVEREQQNFADIATLNLR 143 Query: 119 -PWYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVV 177 + D LAL +E K ++ + I +F+ + R +V Sbjct: 144 AAGQLRIADRVAKSYDELTLALHRDSETKQSIIGLLQAISLIFVFSCIVALSLGARRVLV 203 Query: 178 APLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSL--EASVEE 235 L+ L+ ++ + +E +L + +Q+S+++ + E Sbjct: 204 ERLDNLLRFI-ALKPHD----AEPRHATDEFAVLEQCASQLSAKVQSYESEVTWAHRTSE 258 Query: 236 KTRDLHEAKR-RLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYL----ELNVGEN 290 TR L A+ L + S+ + + + + + + + + A + E Sbjct: 259 HTRVLIRAQDFILRFIESVSEDVLSERTMLKMLYSLERSLGFSNTALIYTDDAAVISSER 318 Query: 291 WRISEGQPNPELPMQILPVTMQETV-------------------------YGELHWQNSH 325 S +P+ + ++ G L + Sbjct: 319 IIFSHQKPHNLTEKIFKELLQTGSITYDYTNPEGEKVSCMGMTFSGISNGVGVLLVEMDE 378 Query: 326 ----VSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLR 381 S +L + +L F + ++L ++EERA IARELHDSLAQ LS+++ Sbjct: 379 GRFLEDSEVKVLEITTRLLSMVTKFQSHDEEGRRLAVLEERAAIARELHDSLAQSLSFMK 438 Query: 382 IQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLD 441 IQ+ L+ + A ++ + + L++AYR+LRELLTTFR+ + L A++ +D Sbjct: 439 IQVARLQ---AKSGAQQDDVVKELREGLDNAYRELRELLTTFRVHMDLRGLGYAIQATID 495 Query: 442 TLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGN 501 ++ ++ D RL L + H+L ++REA+ N ++H+ A + + + +G Sbjct: 496 EFSQRSQLVISFDNRLVNCRLTVNEEFHILHVVREALSNIVRHSGADNVTILMLLQKNGE 555 Query: 502 HTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 + I D+G+G + H+G IM+ERA+ LGG + GGT V +SF Sbjct: 556 VELTIDDDGVGFHPASDTYDHHGQAIMKERAQTLGGNVEVMARRFGGTRVRLSF 609 >UniRef50_Q67S65 Two-component sensor histidine kinase n=1 Tax=Symbiobacterium thermophilum RepID=Q67S65_SYMTH Length = 633 Score = 247 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 84/415 (20%), Positives = 162/415 (39%), Gaps = 69/415 (16%) Query: 211 LAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLE-------VLYQCSQALNTSQID 263 L++ F++M ++L +LE V ++T L + R LE L+ +A++T+ Sbjct: 223 LSQEFHRM----NRLLDTLEDKVADRTDQLAQTVRALERRLAESEALHAVDEAISTAIHP 278 Query: 264 VHCFRHILQ--------------IVRDNEAAEYLELNVGENWRISEGQPNP---ELPMQI 306 + I + ++ + + +++ GE G P L + Sbjct: 279 DEVLQVIARESVRVTGGSSALVTLLTPDGSRQFVRATHGEGMEAYVGLELPMEGNLTSLV 338 Query: 307 L---------------------------------PVTMQETVYGELHWQNSHVSSSE--- 330 L P+ + G L + + Sbjct: 339 LQTGKPHFSREPDRDPRLNQDLVRAGGWRDVIQAPIRTKNRTLGVLVVASRQPGRFDEQH 398 Query: 331 -PLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKR 389 LL +++ GR + ++ +++ ++EER +ARELHDS+ QVL L + L Sbjct: 399 LRLLTLLANQAGRLIESSELHAKAREVAVLEERNRLARELHDSVTQVLFGLTLNLESAVG 458 Query: 390 SIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTS 448 + A++++ + +A ++R L+ R LQ+ L AL ++ + +T Sbjct: 459 LLDRKPEKARTLLTRSREMAGEALAEMRSLIFELRPAALQEKGLAMALSNHINLFRRRTG 518 Query: 449 AKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRD 508 ++ L L ++ L ++ +EA+ N KHA A + V P+ + + D Sbjct: 519 VEVNLTLSGDE-RLSPDVEFALYRVAQEALNNVAKHARARHVRVKLDLRPEEAL-LEVCD 576 Query: 509 NGIGIGEPKEPEG-HYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEE 562 +G+G G +G+ MRER L G+L G GT + +A G + Sbjct: 577 DGVGFDPTASARGASFGMIGMRERVSELKGSLEVISAPGQGTCIRARIPAASGGD 631 >UniRef50_B7AAT7 Histidine kinase n=1 Tax=Thermus aquaticus Y51MC23 RepID=B7AAT7_THEAQ Length = 564 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 98/434 (22%), Positives = 163/434 (37%), Gaps = 48/434 (11%) Query: 149 LVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNEL 208 VV L G + L +++ PL+ +V + R++ GQ P P+EL Sbjct: 152 RVVWAGLFGLLWAVGLGGALGYLFLTRLLEPLSLMVQEASRLKEGQ---PARFPEPPHEL 208 Query: 209 GLLAKTFNQMSSELHKLYRSLEASV----EEKTRDLHEAKRRL------EVLYQCSQALN 258 G L + N M +E+ + R L E DL R+ E+ + C Sbjct: 209 GALGRALNAMGAEVRRRERDLRLLNRLLSEMHALDLATLSERVLGLLVRELGFTCGDLWL 268 Query: 259 TSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETVYGE 318 + ++ + + L + +G P P L + + V Sbjct: 269 SGRVVHCEACRDRCPLGGVASLAQEALASRQVVVRPQGVAVPVPPHGALVLHGRPEV--- 325 Query: 319 LHWQNSHVSSSEPLLNSVSSMLGRGLYFNQ-----AQKHFQQLLLM--------EERATI 365 + L +++ L L + A+K Q+ L+ EERA I Sbjct: 326 ------EEAWLRAFLEALAGPLATALENARLYEALAEKEAQRARLLKAWLKAQEEERARI 379 Query: 366 ARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRL 425 ARELHD + Q L+ L + L +P D A + ++R L R Sbjct: 380 ARELHDEVGQALTGLILGLE----GLPGDRVEA------LKELARHTLTEVRRLALDLRP 429 Query: 426 T-LQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKH 484 + L L +ALR + +T ++ L L T L +++ + ++++EA+ N +H Sbjct: 430 SVLDHLGLEAALRRYVREFAERTGVEVDLSLHL-TRPLPQELETVVYRVVQEALTNVARH 488 Query: 485 ANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQP 544 + + + + V G V++ D G G G GL MRER E LGG L+ Sbjct: 489 SGSPQAS-VGVVEVLGEVRVFVEDEGRGFDPEAVDPGRQGLLGMRERVELLGGRLSVESA 547 Query: 545 SGGGTLVSISFRSA 558 G GT V + Sbjct: 548 PGQGTRVQVRLPIG 561 >UniRef50_A8VTE1 Short-chain dehydrogenase/reductase SDR n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VTE1_9BACI Length = 633 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 109/616 (17%), Positives = 226/616 (36%), Gaps = 82/616 (13%) Query: 11 LARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQS---------YRLGYDLQ 61 + A + L+S+L I++ S D A +I+G + ++ Y + + Sbjct: 25 IVAAIVSVALISLLVIRISVTDTMSVQLDERAKSISGDVAARTGDLLLTNNIYAMQSLVN 84 Query: 62 SGSPQLNAHRQLFQQALHSPVLTNLNVWY--------VPEAVKTRYAHLNANWLEMNNRL 113 N +F + V+ + + Y HL Sbjct: 85 DTINNYNDLEYVFILNEDNEVIVDTYPNHQVSTDIINANRVASDEYNHLITF-------- 136 Query: 114 SKGDLPWYQANINNYVNQIDLFVL--ALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRR 171 + + + V +D V E + V + I + + + + Sbjct: 137 -QSEAGVIRDAAAPVVKGMDATVRVGLRDDSLEEAISSVTLQIITFLILLIVVSLVVVMK 195 Query: 172 IRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEA 231 + + P+++LV + R+ G+ + + +E+G L ++F+ M + L E Sbjct: 196 LTRVITKPIDELVGLTNRVAKGEMTARITNYPS-DEIGDLTESFHDMLNTLEHTEAEKEN 254 Query: 232 SVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHI-----LQIVRDNEAAEYLELN 286 V + + R L +L S +T++ L++ D+ A E ++ Sbjct: 255 YVNQ----IITRNRELMLLNDLSDHPDTTKDFNAMMNRFVRDLVLELKLDSAAIEATIID 310 Query: 287 --------------VGENWRISEGQPNPELPMQIL---PVTMQETVYGELHWQNSHVSS- 328 + N I+ + + + G++ + Sbjct: 311 QKQTFSYRAESCPEMNSNCLITCDCDCEKKQANVFNVFSIFAHHNEIGQIKICSPEQLDT 370 Query: 329 -SEPLLNSVSSMLGRGLYFNQA------QKHFQQLLLM-------EERATIARELHDSLA 374 S +L+S+++ LG + N+ ++ +Q+LL +ER IARELHD Sbjct: 371 YSHKILDSIANHLGTVIENNELTHEIKKKEEIRQMLLEKILTVQEDERKRIARELHDQTG 430 Query: 375 QVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLT-LQQADLP 433 LS + + L +L+ + + + + + + + +L R T L + L Sbjct: 431 HALSSILLGLKMLEDA--KTPEEVTKQIEALRKLTHQSIEDIHDLAWQLRPTILDKFGLK 488 Query: 434 SALREMLDTLQNQTSAKLTLDCRL-PTLALDAQMQVHLLQIIREAVLNAMKHANASEIAV 492 +A+ + Q + + + T+ L +M+ + +I++E++ N K+A A+ ++V Sbjct: 489 TAIERYIQDFQQKLDIDYDVLIKGIDTIRLTPEMETAIFRIVQESLTNIFKYAEANSVSV 548 Query: 493 SCVTAPDGNHTVYIRDNGIGIGEPK-----EPEGHYGLNIMRERAERLGGTLTFSQPSGG 547 + D +V I D+G+G K + + GL+ M+ER LGGT G Sbjct: 549 ILLRNHD-MISVIIEDDGVGFDVEKMMNKDPSKFNLGLHGMQERTSLLGGTFEIESEKGR 607 Query: 548 GTLVSISFR--SAEGE 561 GT + + S GE Sbjct: 608 GTAIMVKLPMSSERGE 623 >UniRef50_Q5SJ33 Sensor histidine kinase n=3 Tax=Thermus RepID=Q5SJ33_THET8 Length = 515 Score = 240 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 88/355 (24%), Positives = 145/355 (40%), Gaps = 29/355 (8%) Query: 229 LEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAE-----YL 283 L V + + R L L++ QAL +L +R AE L Sbjct: 162 LAHEVAGALQAVVARSRDLLTLFEVDQALKAEANLDRLLEGLLDRIRAWAGAEGGGVLLL 221 Query: 284 ELNVGENWRISEGQPNPELP--------------------MQILPVTMQETVYGELHWQN 323 + R+ +G P P + LP+ +E V G L + Sbjct: 222 DEEGFLLARVVQGLALPSHPFLPEGAWKAALQGPVFVEKGVLALPLKAREPV-GVLVLKG 280 Query: 324 SHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQ 383 +S P L+ ++S + + QA ++L + EER IARE+HD LAQ L+++ ++ Sbjct: 281 EDLSRRIPFLSFLASQVALAVRNAQAYLKAEELAINEERTRIAREIHDGLAQSLAFMALK 340 Query: 384 LTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDT 442 L L++R +D A +A+ + L R++R + R L++ +LR Sbjct: 341 LDLVERLWEKDKEAALGALAEVRETLRAQIREVRRSIFALRPIDLERYGFLESLRRYAQA 400 Query: 443 LQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNH 502 Q ++ L + L ++ L ++++EA+ NA KHA + + V + Sbjct: 401 FAEQAGFRVQLSLP-ERVGLSQASELVLFRVLQEALTNAAKHARPTRVEVVLEPLGERGA 459 Query: 503 TVYIRDNGIGIGEPKEPE-GHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFR 556 + +RDNG G P+ G +GL MRER E GG G GT V Sbjct: 460 RLVVRDNGRGFAVPEAQGLGGFGLTQMRERVEARGGRFWVVSAPGRGTEVGAEVP 514 >UniRef50_B2AKD3 Putative multi-sensor signal transduction histidine kinase n=1 Tax=Cupriavidus taiwanensis RepID=B2AKD3_CUPTR Length = 608 Score = 239 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 100/446 (22%), Positives = 165/446 (36%), Gaps = 45/446 (10%) Query: 151 VAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGL 210 AI + L + ++ V +P+N L +I G D+ + +ELG Sbjct: 157 QAIFAIMAALLAVLYAASFLLLKRMVRSPVNGLEKMVDKISGGDLDAR-CEVKSGDELGR 215 Query: 211 LAKTFNQMSSELHKL----------YRS-LEASVE-----EKTRDLHEAKRRLEVL--YQ 252 LA N M+ +L YRS +E +VE ++ +L EA + L Y Sbjct: 216 LAVRINYMADQLRTSTLLLQKSERKYRSIVENAVEGIFLLDQAGNLAEANPAMAQLLGYD 275 Query: 253 CSQALNTSQID------------VHCFRHILQIVRDNEAAEY--LELNVGENWRI--SEG 296 + L S L + + E L+ W + G Sbjct: 276 NACDLTVSAESDGRPKSPFSLSLTATLFKTLNVDGEIRGLELQLSRLDGTPIWVQLNARG 335 Query: 297 QPNPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLN------SVSSMLGRGLYFNQAQ 350 E ++ L + + + ++ + L + +L Q Sbjct: 336 LMGSEGSLRYLEGLLTDVTARKHALEDLQLQRDRLELEVSERKWTELELLASRERLQQLH 395 Query: 351 KHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALN 410 H Q+ + EER IA E+HD L Q+L+ L++ L+LL +P + Q + + + Sbjct: 396 AH-QEAIREEERKCIAMEIHDELGQLLTALKMDLSLLSMQLPTGSGVIQKA-EEMRELIE 453 Query: 411 DAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHL 470 R +R +++ R T L SAL + T P L + Sbjct: 454 QTIRIVRNVVSHLRPTALNYGLASALEWLAADFSRHTKIPCRFQSTHPEPNLPDPRATAI 513 Query: 471 LQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEG-HYGLNIMR 529 +I++E++ N +HA AS++ V+ D V IRDNG G G YGL+ M Sbjct: 514 FRIVQESLTNVARHAKASQVDVTLA-NTDAGIEVIIRDNGQGFNVVSARAGYSYGLHGMA 572 Query: 530 ERAERLGGTLTFSQPSGGGTLVSISF 555 ERA +G L GTL+ + Sbjct: 573 ERARLIGAQLEVHSKPDRGTLIRLRL 598 >UniRef50_D1C6S2 Histidine kinase n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C6S2_SPHTD Length = 456 Score = 239 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 110/429 (25%), Positives = 184/429 (42%), Gaps = 32/429 (7%) Query: 144 ERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTN 203 R++ L+ I + + + F L RHQVV P + A+ G+ + PLD Sbjct: 31 ARRLRLLKWI----TVVVPGVFIFVLESTRHQVVEPFLREHGAT-----GRLPAIPLDIG 81 Query: 204 LPNELGLLAKTFNQMSSELHKLYRSLEASVEEK-TRDLHEAKRRLEVLYQCSQALNTSQI 262 +GLLA L + L V E R L L L + + S Sbjct: 82 NLI-VGLLAFG-------LAFGFSHLVFGVIEHMQRRLLRRNAELAALNAVAASAGASLR 133 Query: 263 DVHCFRHILQIVRDNEAAEYLELNVGENWRISEG-QPNPELPMQI----LPVTMQETVYG 317 + ++ A+ + +++ E G P+ + +P+ + +G Sbjct: 134 VGDIVAQAEETLQRLFPADSVRIDLTEPVVAGTGDVPDDGTSLAAGEMRVPLQARGHRHG 193 Query: 318 ELHW---QNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLA 374 L + + + LL ++ LG + + + + ++EER IARE+HD +A Sbjct: 194 TLRLTRSRGEFSRADQRLLRAIGDTLGMAIENARLHQQVHEAAVVEERGRIAREMHDGVA 253 Query: 375 QVLSYLRIQLTLLKRSI-PEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQA-DL 432 Q+L+Y+ ++L + + TA++ + QA AY +RE + RL A L Sbjct: 254 QMLAYVLVKLGTVDGLLAAGAADTARAEIETMRQAAESAYTDVREQILGLRLVTDGAPGL 313 Query: 433 PSALREMLDTLQNQTSAKLTLDC-RLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIA 491 + LR LD QT +TL+ LP AL ++ +++I +EA+ N KHA+A + Sbjct: 314 AAWLRTYLDDFAEQTDLDVTLEIDDLPPGALPRASELQVIRIAQEALSNVRKHADARSVR 373 Query: 492 VSCVTAPDGNHTVYIRDNGIGIGE--PKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGT 549 V C T +G+ + + D+G G H+GL MRERAE LGGTL G GT Sbjct: 374 VRC-TVEEGDLILTVADDGRGFDPSSANRQGHHFGLLTMRERAESLGGTLQIESQPGSGT 432 Query: 550 LVSISFRSA 558 +++ Sbjct: 433 RITLRAPLP 441 >UniRef50_D1C419 Histidine kinase n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C419_SPHTD Length = 437 Score = 238 bits (607), Expect = 5e-61, Method: Composition-based stats. Identities = 56/221 (25%), Positives = 97/221 (43%), Gaps = 9/221 (4%) Query: 347 NQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFS 406 + +Q ++EER +ARE+HD+LAQ + + + L + IP + + + Sbjct: 201 AALAERERQAGVIEERQRLAREIHDTLAQGFTSIVMHLEAAEPHIPAEATALRRHVEQAR 260 Query: 407 QALNDAYRQLRELLTTFRL-TLQQAD-LPSALREMLDTLQNQTSAKLTLDCRLPTLALDA 464 D+ R L+ R L+Q L AL + + T + + L Sbjct: 261 ATARDSLNDARRLVWALRPEQLEQGGSLADALARVAERWSEDTGITAHVTVDGTPVPLPP 320 Query: 465 QMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIG------EPKE 518 ++V L +I +EA+ N KHA A + ++ D + ++D+G+G P Sbjct: 321 DVEVTLFRITQEALANVRKHAQAGRVDITLSYLDD-EVLLDVQDDGVGFDRATVSATPGS 379 Query: 519 PEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAE 559 G +GL MRER LGG+L G GT ++++ A+ Sbjct: 380 VNGGFGLTGMRERLRLLGGSLMIESAPGEGTSITVALPLAD 420 >UniRef50_Q025Z0 Histidine kinase n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q025Z0_SOLUE Length = 969 Score = 237 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 71/228 (31%), Positives = 113/228 (49%), Gaps = 8/228 (3%) Query: 338 SMLGRGLYFNQAQKHFQQ---LLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPED 394 +MLG Q + + L++EERA +ARE+HD+LAQ + QL + S+P + Sbjct: 743 AMLGAAWAIYQLRLRQIRSRFALVLEERARLAREIHDTLAQGFVGISSQLDAVAMSMPAE 802 Query: 395 NATAQSIMADFSQALNDAYRQLRELLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLTL 453 A+ + + + + R + R + L+ DL +A++ L ++ K+++ Sbjct: 803 ATPARGYLDLARRMARHSLTEARRSVMDLRASALEGQDLAAAIQSGTLLLTAGSNVKVSV 862 Query: 454 DCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGI 513 D P L +M+ HLL+I++EAV N +KHA A I V P + I D+G G Sbjct: 863 DVSGPVTELPEEMEQHLLRIVQEAVTNVLKHAAARNIWVKIRVEP-RKLYLAILDDGRGF 921 Query: 514 GEP---KEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSA 558 + GH+G+ MRERAERLGG L + G GT V ++ Sbjct: 922 DQHDVFASRGGHFGVIGMRERAERLGGELRLASHPGEGTQVEVTVPLP 969 >UniRef50_Q7NE94 Glr3986 protein n=1 Tax=Gloeobacter violaceus RepID=Q7NE94_GLOVI Length = 655 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 68/302 (22%), Positives = 124/302 (41%), Gaps = 6/302 (1%) Query: 259 TSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETVYGE 318 + D ++ + R + V +R M I+P+ + + V G Sbjct: 353 SEARDCEVYQQVYLHRRCLVLEDVPNNPVSVPFREWAAARGGIQTMLIVPLVLADRVIGS 412 Query: 319 LHWQNSH----VSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLA 374 ++ +S L +++ + + + ++ ++EER +ARELHD+L Sbjct: 413 FSVCSTEKRVFLSQEIELAQALAHQATLAVQLTRLAEQGRRSAVLEERNRMARELHDTLM 472 Query: 375 QVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLT-LQQADLP 433 Q L+ + +QL + D + + + + R + R L+Q DL Sbjct: 473 QGLAGIVVQLQAATDAGVADPLDGRDHIDRARTLARRSLAEARRSVRALRPQLLEQGDLG 532 Query: 434 SALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVS 493 AL ++L + + R AL A+ + LL+I EA+ NA++HA A+ + V Sbjct: 533 QALADLLQQSIYDNHTEARCEVRGTPFALPAEAENQLLRIAGEALSNALRHARANRVHVE 592 Query: 494 CVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSI 553 + + D+G G + +GL MRERAER+G L G GT V++ Sbjct: 593 LDYER-PQVRLVVADDGRGFDPDRVGTDRFGLVGMRERAERIGADLRLESVPGQGTRVAV 651 Query: 554 SF 555 + Sbjct: 652 TL 653 >UniRef50_D1UN54 PAS/PAC sensor signal transduction histidine kinase n=1 Tax=Burkholderia sp. CCGE1001 RepID=D1UN54_9BURK Length = 610 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 93/450 (20%), Positives = 160/450 (35%), Gaps = 46/450 (10%) Query: 152 AISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLL 211 AI + TL TL + V +P+N+L RI G D +ELG L Sbjct: 158 AILATIAAVVATLYAATLVLLNGMVRSPINRLEEMVDRIAAGNLDVR-CAVESDDELGRL 216 Query: 212 AKTFNQMSSELHKLYRSLEASVEEKTRD-----------------LHEAKRRLEVL--YQ 252 A N M+ L + L S E+K R L EA + L Y Sbjct: 217 AARVNAMADRLRESTARLYES-EQKYRSIVENALEGIFRLHRNGWLEEANPAMARLLGYD 275 Query: 253 CSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQ 312 ++AL + R + + + + + L Sbjct: 276 SARALVAAGTREPDKRPFTPQQVEGLFERLDGSGEIAELELPLARADGTVIWVQLSARGV 335 Query: 313 ETVYGELHWQNSHVSS--------------SEPLLNSVSSMLGRGLYFNQAQKHFQQL-- 356 G + + + + L V+ +++ ++L Sbjct: 336 ADSSGAIVRLDGFFADVTARRQALDHLRRHRDELQAEVAERKRTEQELRASREELRELSW 395 Query: 357 ----LLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDA 412 + EER IA E+HD L Q+L+ L+I ++LL+ + + AQ + + Sbjct: 396 HLEVIREEERKRIALEVHDELGQLLTALKIDISLLQMRLAGNPE-AQGKTDAMRELIERT 454 Query: 413 YRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQ 472 +R + R L SAL + + + T+ L+ + + Sbjct: 455 MWMVRNVANHLRPAALNFGLVSALEWLAQDFNARYYIQCTVVTHGDEPVLEDARATAIFR 514 Query: 473 IIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIG---EPKEPEGHYGLNIMR 529 I +E++ N +HA AS + ++ + +G + IRD+G G G YGL M Sbjct: 515 IAQESLTNVARHARASHVVLTL-RSGEGFIDLEIRDDGCGFDRDAVSARQRGSYGLLGMA 573 Query: 530 ERAERLGGTLTFSQPSGGGTLVSISFRSAE 559 ERA +GG LT + + GT+V++ + Sbjct: 574 ERARLIGGALTITSGASTGTVVALRIPLPD 603 >UniRef50_A9B363 Integral membrane sensor signal transduction histidine kinase n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B363_HERA2 Length = 517 Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 76/337 (22%), Positives = 140/337 (41%), Gaps = 12/337 (3%) Query: 230 EASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQ--IVRDNEAAEYLELNV 287 VE+ ++L + + L+ L + AL++ + + N A + L Sbjct: 182 RQKVEQLAQELAQERDYLQQLSAITAALSSEVQLARVLAQVAEAGRSLANAQAVTVALLE 241 Query: 288 GENWRI--SEGQPNPELPMQILPVTMQETVYGELHW--QNSHVSSSEPLLNSVSSMLGRG 343 WRI S G P+ LP + + + G L++ ++ L + Sbjct: 242 DPEWRIVASVGSPDTNLPSLEIMLHAKGETIGRLNYWSIQPTNAALRQALQPFADAAAMA 301 Query: 344 LYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMA 403 +Y Q + + + ER +AR+ HD+LAQ L+ LR+Q+ R++ + AQ + Sbjct: 302 IYNAQLYEQARFSATLAERNRLARDFHDTLAQQLTGLRLQIEAGMRNLHQ-PEKAQLRLQ 360 Query: 404 DFSQALNDAYRQLRELLTTFR-LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLAL 462 A LR + + L L E++DT +T+ + L L Sbjct: 361 KAYDLALAALHDLRRSVWNLSAPAIDGRVLSDVLAELVDTFHQRTNIQSQYSHDGQELTL 420 Query: 463 DAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGI---GEPKEP 519 + + + +L+++ EA+ N KHA A +A+ A G + + D+G G + Sbjct: 421 PSDVAIQVLRVVNEALSNVEKHAQAKHVAIRSTVAA-GQLQITVSDDGQGFELAAVQQTA 479 Query: 520 EGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFR 556 G +GL MRER + + G+L+ GTL+++ Sbjct: 480 SGGFGLTSMRERTQLIQGSLSIQSQPSAGTLLTLCLP 516 >UniRef50_A1AXR2 Signal transduction histidine kinase, nitrate/nitrite-specific, NarQ n=4 Tax=Gammaproteobacteria RepID=A1AXR2_RUTMC Length = 494 Score = 235 bits (599), Expect = 5e-60, Method: Composition-based stats. Identities = 92/444 (20%), Positives = 174/444 (39%), Gaps = 63/444 (14%) Query: 172 IRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEA 231 IR ++P + L + + Q S L + +AK N + E LY +E+ Sbjct: 54 IRQDFLSPFSDLQSWIDGYKSNQ--SVRLSDHQRTTFQPVAKAINHLIDENQHLYDDMES 111 Query: 232 SVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAE---------- 281 + ++ + L + LE LY S LN F H L I + A Sbjct: 112 ILNKQIQRLSKKSASLETLYSVSSKLNKMHSIDELFTHFLHIFINMIGASSGAARSLSDD 171 Query: 282 -------------------------------------YLELNVGENWRISEGQPNPELPM 304 Y++ +V + + + + Sbjct: 172 GQLHLVATQGVIDRQGQVTDVLSADCFCGEIAMASDTYVQFSVHTCAQCVGKKSQTKASV 231 Query: 305 QIL--PVTMQETVYGELHWQ----NSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLL 358 + P+ G + S LL+S++ + L + +++ L Sbjct: 232 GTIFIPLKYHGKTLGTFNLFFDTLPSLTFDERALLSSIAENIAIALDKARLDAQTKRMEL 291 Query: 359 MEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDN-ATAQSIMADFSQALNDAYRQLR 417 +ER +++E+HDSLAQ + L++Q+T+L + + A + + A ++LR Sbjct: 292 SQERLFLSQEIHDSLAQTIYSLKLQVTVLGNMLKTGKKSDASDKVLSLQSNITQANQELR 351 Query: 418 ELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREA 477 EL+ FR+ L + +L +L+ ++ L L + ++++ +++II+EA Sbjct: 352 ELMCNFRMPLDPKGIEVSLTNLLNRFMSEEGITTYLQVEG-KLQVSPEVEMQIMRIIQEA 410 Query: 478 VLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPE----GHYGLNIMRERAE 533 + N KHA A + V + P N + I D+GIG + + + G+NIM+ERA Sbjct: 411 LSNIRKHAKARNVRVLLLVEP--NCQLLIEDDGIGFEKDQNESEIMGNNIGMNIMKERAI 468 Query: 534 RLGGTLTFSQPSGGGTLVSISFRS 557 R+G ++ GT V ++ Sbjct: 469 RIGASIEIESEVDEGTCVIVNLPK 492 >UniRef50_C6XAG1 Histidine kinase n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6XAG1_METSD Length = 608 Score = 234 bits (597), Expect = 7e-60, Method: Composition-based stats. Identities = 110/471 (23%), Positives = 198/471 (42%), Gaps = 43/471 (9%) Query: 109 MNNRLSKGDLPWYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFT 168 + + ++ + D LQ E K ++ + L G+ + + +F Sbjct: 123 VAQYPQPEHSAGWLQAVDQVLRDYDSVAEELQRDVEVKQSVIGLLQLVSGLLLVSCLFAL 182 Query: 169 LRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRS 228 + +H ++ + L R+ +F D +E L +T ++++ L Sbjct: 183 ALKAKHLLIDRIGHLT----RLLPEEFQLED-DQPYADEFARLEQTIYRIAARLEGFRAE 237 Query: 229 LEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVG 288 E + ++ L R L+Q +NT + R +L ++ + + L Sbjct: 238 SEWFNQTRSERLRRVLRAQGFLHQLVGMINTPDLSEALLRKVLYMLESALDVQNVALLFA 297 Query: 289 E--------NWRISEGQPNPELPMQILPVTMQ--------------------------ET 314 E S+ P P + ++ Sbjct: 298 EKSGGETVERTLFSQHLPRAIPPGLLAELSTSQAANYQLPASDGQEGASGVVAAFTSPWE 357 Query: 315 VYGELHWQNS----HVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELH 370 G L + + L+ + +L + ++ ++ L++ERA IARELH Sbjct: 358 TLGMLTVEAEATHVFDETDIELVEMTAQLLSMVMGTQNREQEGRRAALLDERAAIARELH 417 Query: 371 DSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQA 430 DSLAQ LS+++IQ+ L+ +A + I+ + Q L++AYR+LRELL+TFR+ + Sbjct: 418 DSLAQSLSFMKIQIFRLQSHPQTQHADLRGIVNELRQGLDNAYRELRELLSTFRVHMDVR 477 Query: 431 DLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEI 490 L A++ +D +++ + LD RL L + H+L +IREA+ N ++H+ AS + Sbjct: 478 GLRFAIQSAIDEFMQRSNLSIALDNRLVNCRLTVNEEFHILHVIREALSNIVRHSGASTV 537 Query: 491 AVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTF 541 V+ V +G+ V I D+GIG GHYG +IM+ERA LGG L Sbjct: 538 TVALVYQSNGSVIVTIDDDGIGYASKPGEPGHYGHSIMQERAYSLGGELAV 588 >UniRef50_Q1AZP1 Periplasmic sensor signal transduction histidine kinase n=2 Tax=Actinobacteria (class) RepID=Q1AZP1_RUBXD Length = 508 Score = 234 bits (596), Expect = 9e-60, Method: Composition-based stats. Identities = 61/224 (27%), Positives = 103/224 (45%), Gaps = 6/224 (2%) Query: 344 LYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMA 403 L + + ++ ++EER +A E+HD+LAQ + + L ++ D A + + Sbjct: 280 LENLRLVERARRAGVLEERQRLAHEIHDTLAQGFTSIVTNLEAAGGALQRDRAALRRHLE 339 Query: 404 DFSQALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLAL 462 ++ + R L+ R L++A LP ALR + + + + AL Sbjct: 340 QALAVARESLSEARRLVWALRPEPLEEAPLPEALRRLAARWSSSSGIPARVLVTGEPRAL 399 Query: 463 DAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEG- 521 A +V LL++ +EA+ N KHA A +A++ D + +RD+G+G G Sbjct: 400 PADPEVTLLRVAQEALANVRKHARAGRVAITLSYIGD-RVALDVRDDGVGFDPAAPSPGD 458 Query: 522 ---HYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEE 562 +GL MRER R GGTL+ G GT++S +A E Sbjct: 459 DGSGFGLRSMRERVGRAGGTLSVESAPGEGTVLSAEVPAAGAAE 502 >UniRef50_Q1IXN3 Periplasmic sensor signal transduction histidine kinase n=2 Tax=Deinococcus RepID=Q1IXN3_DEIGD Length = 564 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 78/349 (22%), Positives = 136/349 (38%), Gaps = 30/349 (8%) Query: 243 AKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPN--- 299 A+R + L + + + + R A + L + + P+ Sbjct: 218 ARREVAALRRAAGRVALGDDLQATLADLAGQARAASTAWAVALTAPDGTLRARSGPDHPT 277 Query: 300 -------------------PELPMQILPVTMQETVYGELHWQNSHV----SSSEPLLNSV 336 + + LPV G L + L S+ Sbjct: 278 LHGPGASPPAGGADVRYAASGVTLATLPVVAGGADGGTLRALYAPGTQPGPEELAFLLSI 337 Query: 337 SSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNA 396 + G L+ + + + +ERA +ARELHDS+AQ L + + + ++ D Sbjct: 338 ADHAGTALHAAELIRRASERAEEQERARLARELHDSVAQALYGITLGAKTARATLGRDPE 397 Query: 397 TAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDC 455 ++ + + +++ LL + R L++ L +AL + L+ + + D Sbjct: 398 KTRASLDYTIRLAEGGVSEMKALLFSLRPDALEEGGLVAALMQNAHALEARHGLTVHADL 457 Query: 456 RLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGE 515 L Q ++ +EA+ N +KHA AS++ +S V G T+ +RD+G G Sbjct: 458 -GREPRLSPTAQAAAYRVAQEALHNVVKHARASQVWLS-VREEAGRVTLEVRDDGRGFDP 515 Query: 516 PKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEESQ 564 P G G MRERA+ GGTLT G GT V++ +A GEE + Sbjct: 516 AALPGGTLGQRSMRERAQGTGGTLTVHSSPGAGTTVTLILPAA-GEEVE 563 >UniRef50_D1C9Z9 GAF sensor signal transduction histidine kinase n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C9Z9_SPHTD Length = 883 Score = 232 bits (591), Expect = 4e-59, Method: Composition-based stats. Identities = 64/261 (24%), Positives = 114/261 (43%), Gaps = 10/261 (3%) Query: 307 LPVTMQETVYGELHWQ-----NSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEE 361 +P+ + + G + L+ V+ G + + L + EE Sbjct: 617 VPLAAKGRILGVAFVFSETPCDGFTPDRIQLIRGVADSAGLAVENARLYAQSHGLAIAEE 676 Query: 362 RATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLT 421 R +A+E+HD+LAQ L+ + + L L +P A + + + R + Sbjct: 677 RGRLAQEIHDTLAQGLTAISLHLDLADAYLPHKPEQAADKVRRALELTRQNLEEARRSVL 736 Query: 422 TFRLT-LQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLN 480 R L Q LP ALR ++ T T + L A++++ L +I EA+ N Sbjct: 737 DLRAARLHQMSLPDALRRLVLTFTGDTGVEADFVVEGLVGRLSARVEMGLYRIAEEALNN 796 Query: 481 AMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGE---PKEPEGHYGLNIMRERAERLGG 537 +HA A+ + V+ TA +G ++ + D+G+G + ++ G +GL +RERA L G Sbjct: 797 VRRHATANHVRVAL-TASEGQVSLTVEDDGVGFAQEAIERDNGGGFGLMSIRERARLLRG 855 Query: 538 TLTFSQPSGGGTLVSISFRSA 558 TL S G GT + ++ + Sbjct: 856 TLDLSSAPGEGTRLVVTIPAE 876 >UniRef50_Q3M1D8 Serine/threonine protein kinase and signal transduction histidine kinase with GAF and PAS/PAC sensor n=9 Tax=Bacteria RepID=Q3M1D8_ANAVT Length = 2361 Score = 231 bits (589), Expect = 6e-59, Method: Composition-based stats. Identities = 76/289 (26%), Positives = 129/289 (44%), Gaps = 10/289 (3%) Query: 272 QIVRDNEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETVYGELHWQNSHVSSSEP 331 Q + +L E QIL V + G W ++ ++ P Sbjct: 2080 QPFEEMIGKTMHQLGREEADEFLGYIQQVLRTQQILTVEYGAFLNGREMWFSARIA---P 2136 Query: 332 LLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSI 391 + + L R + AQK ++ ++EER +ARE+HD+LAQ + + Q+ K+ + Sbjct: 2137 ISHDQVIWLVRDIT---AQKQAEEASILEERNRMAREIHDTLAQAFTGILAQVGAAKQVL 2193 Query: 392 PEDNATAQSIMADFSQALNDAYRQLRELLTTFRLT-LQQADLPSALREMLDTLQ-NQTSA 449 +D AQ+ + + + R + R L++ L SAL ++ ++ T Sbjct: 2194 TDDVEAAQAHLDLIKELARTGLTEARRSVIALRPQLLEEGSLQSALHRLVAQIRAAATDT 2253 Query: 450 KLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDN 509 L + +L +++ +LL+I +EA+ NA+++ANA EI V V D + +RDN Sbjct: 2254 TLYYEIEGAVYSLPTEVENNLLRIGQEALTNAIRYANADEIRVELVYDRD-QFCLRVRDN 2312 Query: 510 GIGIGEPK-EPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRS 557 G G G +GL M ERAER+G LT G GT + ++ Sbjct: 2313 GQGFGVGSISASEGFGLLGMSERAERIGAQLTIRSQPGQGTEIIVTVNP 2361 >UniRef50_B8CZJ7 Integral membrane sensor signal transduction histidine kinase n=1 Tax=Halothermothrix orenii H 168 RepID=B8CZJ7_HALOH Length = 352 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 57/221 (25%), Positives = 118/221 (53%), Gaps = 5/221 (2%) Query: 339 MLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPE-DNAT 397 +L + + +K ++L ++EER IARELHDS++Q L + + L L+ I E D+ Sbjct: 132 VLEQQQEKLELEKENKKLAIIEERNRIARELHDSVSQNLFGINLNLNTLEVLIDEGDHDR 191 Query: 398 AQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCR 456 + + D + + + ++R ++ + L++ D AL +++ +N+ + K+T Sbjct: 192 VRKTVEDLKKMVQEVQTEMRLMIYELKPVHLREKDFFEALESLVELYRNRYNLKITTHLN 251 Query: 457 LPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEP 516 +++++Q+ L ++ +EA+ N +KHA+A +++++ +G T+ I+DNG G Sbjct: 252 GNENRVESEVQLALYRVAQEALNNIVKHADADKVSITLGIGNNG-ITMAIKDNGKGFNVG 310 Query: 517 K--EPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 + G +G++ M++R +GG G GT V +S Sbjct: 311 RVKAGSGRFGISGMKDRVNDVGGDFDIESQPGQGTTVKVSI 351 >UniRef50_Q1H0K4 Multi-sensor signal transduction histidine kinase n=2 Tax=Methylophilaceae RepID=Q1H0K4_METFK Length = 573 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 89/432 (20%), Positives = 169/432 (39%), Gaps = 56/432 (12%) Query: 160 GIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMS 219 G F ++ + + + + P + ++ A +E G D N+P E +A+ FN M Sbjct: 158 GFFVVLNALIYWMLGRWLRPADDILRAISEVERGNLDVRLPKFNVP-EFSRIAQNFNLMG 216 Query: 220 SELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQA---LNTSQIDVHCFRHILQIVRD 276 L E+T + RRL ++ Q S ++ ++ + Q + Sbjct: 217 ESL-----------RERTEE----NRRLALIVQQSADAIMIHDPDGNISFWNPAAQRLFG 261 Query: 277 NEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNS- 335 + + + + G + ++ V H+ V+ LL+ Sbjct: 262 YAPEDIIGKSAA--LLMPPGHEGEQERSSAASMSANGLV---EHYDTQRVARDGKLLDVS 316 Query: 336 ----------------------------VSSMLGRGLYFNQAQKHFQQLLLMEERATIAR 367 ++ R L N+ H Q + +ER ++AR Sbjct: 317 LSIAPLMDPKSGELIGEICSMRDITERKLAEETARKLEENRQLTHLIQRHIEDERRSLAR 376 Query: 368 ELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRL-T 426 ELHD L Q ++ ++ + ++ + +S A N Y + ++ R + Sbjct: 377 ELHDELGQYVTAIKTFAVAIANKAKQEMPSIESSAQTIVSAANHIYDGMHNIIRHLRPGS 436 Query: 427 LQQADLPSALREMLDTLQNQ-TSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHA 485 L L ALR+ + Q Q ++ L+ + L + ++L +I++E+V NA++HA Sbjct: 437 LDNLGLSEALRDAVAGWQAQNSNVTFNLELQGKLDLLGESLNINLYRIVQESVTNALRHA 496 Query: 486 NASEIAVSCVTAPDGNHTVYIRDNGIGIGE-PKEPEGHYGLNIMRERAERLGGTLTFSQP 544 A I + +GN T+ I+DNGIG+ + H+GL MRER + L G Sbjct: 497 QADRIDIRLSRDENGNLTLLIKDNGIGMNMCNVDQNRHFGLLGMRERVQALYGNFAIDSQ 556 Query: 545 SGGGTLVSISFR 556 G GT ++++ Sbjct: 557 PGQGTAITVTIP 568 >UniRef50_D1C657 GAF sensor signal transduction histidine kinase n=2 Tax=Bacteria RepID=D1C657_SPHTD Length = 492 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 76/294 (25%), Positives = 123/294 (41%), Gaps = 17/294 (5%) Query: 281 EYLELNVGENWRISEGQPNPELPMQIL---PVTMQETVYGELHW-----QNSHVSSSEPL 332 L + S G P M+ L P+ + G L+ + ++ + Sbjct: 171 VVLRIPDVTKDPRSFGFPPHHPVMRSLLAVPIRSHGRILGSLYLTEKEGASEFDAADQAR 230 Query: 333 LNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIP 392 L ++ + + + Q L + EER IARE+HDSLAQVL Y+ + + + Sbjct: 231 LERFATQTALAIENARLHQRVQALAIAEERERIAREMHDSLAQVLGYVNTKAQAAQELLR 290 Query: 393 E-DNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQ-QADLPSALREMLDTLQNQTSAK 450 A + +QA DAY +RE + R +L+ + + L++ L Q+Q+ Sbjct: 291 NGQQERASEQIGQLAQAARDAYADVRENILGLRTSLEREREFLETLQDYLQRWQDQSGIP 350 Query: 451 LTLDCR---LPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIR 507 + + L L ++ LL+II+EA+ N KH+ AS V + G + Sbjct: 351 VDFRTTPAGITDLRLSPLAELQLLRIIQEALANVRKHSGASRATVHIHRSA-GWIGATVE 409 Query: 508 DNGIGIGEPKEPEG---HYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSA 558 DNG G +GL MRERA+ +GGTL G GT V++ Sbjct: 410 DNGSGFDPSTIGRSAFPRFGLATMRERAQAVGGTLEIRSAPGEGTRVAVRLPVG 463 >UniRef50_B2TAX2 PAS/PAC sensor signal transduction histidine kinase n=1 Tax=Burkholderia phytofirmans PsJN RepID=B2TAX2_BURPP Length = 748 Score = 229 bits (583), Expect = 3e-58, Method: Composition-based stats. Identities = 63/295 (21%), Positives = 111/295 (37%), Gaps = 11/295 (3%) Query: 262 IDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETVYGELHW 321 ++ L+ V + ++L +N G+P + + G L Sbjct: 460 PELRMITATLEQVMASGIGAKVDLTSEKN-----GKPVGWHVSAVPEHGANGDIRGALTI 514 Query: 322 QNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLR 381 E L L Q ++ EER IARE+HD L Q L+ LR Sbjct: 515 WTDITERMEVELR-----LRESYALLQELTSLRETAREEERKRIAREMHDELGQQLTALR 569 Query: 382 IQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLD 441 + ++ ++ +D+ D +D + +R ++ + R A + +AL + Sbjct: 570 LGVSAMRIEFAQDDPALAGRFRDLLALADDTMQVVRNVVASLRPAAIDAGIVAALEWLAA 629 Query: 442 TLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGN 501 L L LD + L +I++EA+ N +HA A+++ +S Sbjct: 630 EFSRDGRVACHLRIPDDNLVLDEARAIALFRIVQEALTNVARHAAATQVTISLEQTG-RC 688 Query: 502 HTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFR 556 + I D+G G +GL MRER LGG ++ G GT +++ Sbjct: 689 WVLEISDDGCGFDSMAARMKSFGLVGMRERVLMLGGEISVCSAPGSGTSITVCIP 743 >UniRef50_A3DEX1 Histidine kinase n=5 Tax=Clostridium RepID=A3DEX1_CLOTH Length = 392 Score = 229 bits (583), Expect = 4e-58, Method: Composition-based stats. Identities = 79/352 (22%), Positives = 151/352 (42%), Gaps = 21/352 (5%) Query: 224 KLYRSLEASVEEKTRDLHEAKRRLEV-LYQCSQAL-NTSQIDVHCFRHILQIVRDNEAAE 281 +L + LE ++ +T ++ ++ LEV LY+ + L + S+ L+ +N Sbjct: 43 RLEKELEE-LKRRTSEIIKSVETLEVALYESKKRLMHVSRNYDKYSEEELREAYENADNI 101 Query: 282 YLELNVGENWRISEGQPNPELPMQILP----VTMQETVYGELHWQNSHVSSS-EPLLNSV 336 +EL + + EL M++ V + + ++ S+++ E + + Sbjct: 102 RVELAIKREREQYYIKRRNELEMRLKEAYKTVEKADNLISQIGISLSYLTGDLENVSLQI 161 Query: 337 SSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNA 396 M R L + K EER +ARE+HD AQ +S + ++ + +R + D Sbjct: 162 EDMKQRRLLGIRIIK-----AQEEERQRVAREIHDGPAQSMSNIVLKAEICERLVDSDPE 216 Query: 397 TAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDC 455 A+ + + D R +R+++ R +L L L+ ++T + ++ K+T Sbjct: 217 KAKDELRTLKSVVRDTLRDVRKIIYDLRPMSLDDLGLIPTLQRYIETCREESGIKITFKT 276 Query: 456 RLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGE 515 R L + + + ++++EAV N KHA A ++ ++ + +YI DNG+G Sbjct: 277 RGTCEQLKPVVSLTVFRLVQEAVNNIKKHARADKVTINLEFL-EKELKLYIADNGVGFDF 335 Query: 516 PKEPEG------HYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGE 561 +GL MRER E L G G GT ++I+ E Sbjct: 336 DSLKSNEEDINKGFGLISMRERVELLDGKFEIDSAVGKGTRLNITVPLLPEE 387 >UniRef50_Q67RQ8 Two-component system sensor kinase n=1 Tax=Symbiobacterium thermophilum RepID=Q67RQ8_SYMTH Length = 500 Score = 228 bits (582), Expect = 4e-58, Method: Composition-based stats. Identities = 88/452 (19%), Positives = 172/452 (38%), Gaps = 70/452 (15%) Query: 174 HQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASV 233 Q P+++++ ++R+ G + + + +LA+T ++ +L + R+LE V Sbjct: 51 RQFTRPVSEVMALARRLREGDLRARAVLPPGTDWF-MLARTMTDLAEQLEAVTRNLEEQV 109 Query: 234 EEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLEL-------- 285 +T L +L + Q Q + + +++R + + Sbjct: 110 AVRTAALARKADQLRAVGQVGQQVAAVLDPDVLLHFVTRVMRGTFGYDVAAVLLQHGDYL 169 Query: 286 ----------------------------------------NVGENWRISEGQPNPELP-- 303 E G P P LP Sbjct: 170 VLAACAARGREEVPLGRAFPLTGPTPSPLARALAAGEPGGERAEGEHPESGPPTPLLPDT 229 Query: 304 ----MQILPVTMQETVYGELHWQNSHVSSSEPL----LNSVSSMLGRGLYFNQ---AQKH 352 +P+ + + G + Q+ + + +++ + L + A++ Sbjct: 230 APRAELAIPIRVADRTLGLMVVQSFDPRPFDEEDRFTVQTIAGQVAVALENARLLEAERR 289 Query: 353 FQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDA 412 ++L + EER +ARE+HD+LAQ + +QL ++ D TA+ + ++ Sbjct: 290 LRRLAVTEERNRMAREIHDTLAQGFMGILMQLRAME--AAADPETARFHREVAAALAQES 347 Query: 413 YRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLL 471 ++ R + R L+ L AL + L+ Q AL+ ++V LL Sbjct: 348 LQEARRSVWKLRPHPLEDRGLAEALAAEVAALEGQFGLIGRFHMDGDAAALEPPVEVALL 407 Query: 472 QIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPE----GHYGLNI 527 +I +EA+ NA+K+A A+ + V T DG + + D+G+G P+ G YGL + Sbjct: 408 RIAQEAIHNAVKYARATRLDVGL-TIRDGMAVLTVADDGVGFDPASPPKPAAGGGYGLGM 466 Query: 528 MRERAERLGGTLTFSQPSGGGTLVSISFRSAE 559 M +RA ++GG L GGG + + Sbjct: 467 MADRARQVGGGLEVDARPGGGCRIVARVPLRK 498 >UniRef50_C6QH09 Histidine kinase n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QH09_9RHIZ Length = 619 Score = 228 bits (582), Expect = 4e-58, Method: Composition-based stats. Identities = 84/319 (26%), Positives = 153/319 (47%), Gaps = 15/319 (4%) Query: 248 EVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGE--NWRISEGQPNPELPMQ 305 ++ + L +++ + + A +E + + ++ G + Sbjct: 305 AAVFHSGRCLFSNREPAALSKQFEAEISQAGAGAIVEEHAEDLRTRKVGLGFVDATGETS 364 Query: 306 ILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATI 365 +L V + + + L +S+L + + +++ ++EERA I Sbjct: 365 VLLVELSG--------DRTLEAVEIKTLRITASLLSMAAKLDGHDQEARRIAVLEERAAI 416 Query: 366 ARELHDSLAQVLSYLRIQLTLLK----RSIPEDNATAQSIMADFSQALNDAYRQLRELLT 421 ARELHDSLAQ LS+++IQL L+ E ++I ++ L++AYR+LRELL Sbjct: 417 ARELHDSLAQSLSFMKIQLARLQSYQNNVTSESREQTKAITSELRHGLDNAYRELRELLA 476 Query: 422 TFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNA 481 TFR+ + L A+ ++ ++ ++LD RL AL + H+L ++REA+ N Sbjct: 477 TFRVHMDVRGLDFAIESAIEEFSQRSGLPISLDNRLAGAALTVNEEFHVLHVVREALSNI 536 Query: 482 MKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPE-GHYGLNIMRERAERLGGTLT 540 ++HA A+ + ++ +G TV I D+GIG + E H+G IM+ERA LGG + Sbjct: 537 LRHARATNVWITMDVRRNGEVTVTIDDDGIGYRPAETKETSHHGQTIMKERAFSLGGAID 596 Query: 541 FSQPSGGGTLVSISFRSAE 559 + GT V+++F + Sbjct: 597 IAPRPEAGTRVTLTFTPQK 615 >UniRef50_B2JVQ4 Integral membrane sensor signal transduction histidine kinase n=1 Tax=Burkholderia phymatum STM815 RepID=B2JVQ4_BURP8 Length = 605 Score = 228 bits (581), Expect = 5e-58, Method: Composition-based stats. Identities = 138/550 (25%), Positives = 217/550 (39%), Gaps = 65/550 (11%) Query: 51 MQSYRLGYDLQSGSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMN 110 M+ R LQ+ SP + +L S L W A A Sbjct: 57 MRLDRKAASLQTASPDTARALRELADSLVSNDTL-LTDWRQRGAPTPEIGGALAAANASA 115 Query: 111 NRLSKGDLPWYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLR 170 G A + + A Q +L ++ + IF +V Sbjct: 116 APEHTGKPDAKLAALGALRAHV-----AYQREVHAAVLGLLQACTV-CLLIFGVVSLAWG 169 Query: 171 RIRHQVVAP---LNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYR 227 R V P L LV + G+ D L EL + +T S L ++ Sbjct: 170 ARRTLVARPRAALQALVETGLSVPQGR-DEIERLLKLQAELAVRLRTEQDESVRLKRIVE 228 Query: 228 SLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNV 287 + A + LE+L+ L + +LQ + A+ + L V Sbjct: 229 D----------YITFADQSLELLHHICAQLAEEEPSGRTLEALLQRLVGVLRAQRIALVV 278 Query: 288 GENWRI-----SEGQPNPELPMQI-------------------------------LPVTM 311 E+ PN ++P + PV + Sbjct: 279 TESTAQLLDIDPVVAPNGDVPAIVRSRVTNELMTLAGTHTFPPLDNGEVPPPVLAAPVRV 338 Query: 312 QETVYGELHWQNSHVSSSEP----LLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIAR 367 YG L + + E L+ +++S+L + +++ L EER IAR Sbjct: 339 PLASYGVLIAEGEPETRFELRHLYLIETIASVLAHAISNLSRDVRDRRMALFEERNAIAR 398 Query: 368 ELHDSLAQVLSYLRIQLTLLKRSIPED--NATAQSIMADFSQALNDAYRQLRELLTTFRL 425 ELHDSLAQ LSY++IQL L+ +P + + I + ++ AYRQLRELLTTFR Sbjct: 399 ELHDSLAQSLSYMKIQLARLQAVLPPELSQSDIAEIARGIREGIDSAYRQLRELLTTFRS 458 Query: 426 TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHA 485 + L S L E+ + +++ ++++D R+P + L ++H+ QI+REA+ N ++HA Sbjct: 459 PMHAHGLASTLEELAEEFGSRSEVQISIDNRVPRMRLSVNEEMHVAQIVREALTNVLRHA 518 Query: 486 NASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPS 545 A+ V ++ TV I D+G GI + E HYGL+IMRERA LGG L Sbjct: 519 RATTAQVQLMS-DGRTMTVSIDDDGRGINRTEGDEHHYGLSIMRERARSLGGRLEVKPAE 577 Query: 546 GGGTLVSISF 555 G+ V ++F Sbjct: 578 -RGSRVVLTF 586 >UniRef50_B8HT67 GAF sensor signal transduction histidine kinase n=1 Tax=Cyanothece sp. PCC 7425 RepID=B8HT67_CYAP4 Length = 652 Score = 228 bits (581), Expect = 6e-58, Method: Composition-based stats. Identities = 68/265 (25%), Positives = 119/265 (44%), Gaps = 9/265 (3%) Query: 298 PNPELPMQILPVTMQETVYGELH-WQNSHVS---SSEPLLNSVSSMLGRGLYFNQAQKHF 353 + +P+ + E G L W SH S L + + Y NQ Sbjct: 385 QRGVTRLLNIPLWLNEKTIGALDIWLPSHRCFNRSQIDLAYTFGQQITLASYLNQMFTEV 444 Query: 354 QQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAY 413 QQ +L+EER IA ++HD+LAQ + + +QL + K I ++ T + I+ SQ + Sbjct: 445 QQTILLEERNRIASDIHDTLAQAFTGISLQLEVAKPLIQQEPQTVEQILQHISQLAKNGL 504 Query: 414 RQLRELLTTF-RLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQ 472 + R + + A+L L + ++ + T + ++ + + ++LL+ Sbjct: 505 AEARRSVWALYPPGTEYANLAHMLYDSVEQMSRNTPISIEVNLLGQPCPIAPYIGMNLLR 564 Query: 473 IIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPE---GHYGLNIMR 529 I +EA+ NA+KH+ A + + PD + IRDNG G P + G +GL M Sbjct: 565 IGQEALTNALKHSQAQAVWIELTYTPD-LVLLSIRDNGRGFTPPTNLDNLNGGFGLVGMY 623 Query: 530 ERAERLGGTLTFSQPSGGGTLVSIS 554 ER +R+G ++ G GT + + Sbjct: 624 ERCDRIGAQISILSQPGQGTQILVE 648 >UniRef50_B9L060 Putative two component system histidine kinase n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L060_THERP Length = 473 Score = 228 bits (581), Expect = 6e-58, Method: Composition-based stats. Identities = 86/304 (28%), Positives = 132/304 (43%), Gaps = 17/304 (5%) Query: 270 ILQIVRDNEAAEYLELNV-GENWRISEGQPNPELPMQILPVTMQETVYGELHWQN----- 323 + ++RD+ +L+ EG P + + P+ QE V G L+ + Sbjct: 155 LEAVLRDDRPLNIEDLDRYPGTRHYPEGHPTMRSLLGV-PIRSQEGVLGGLYLADREDGQ 213 Query: 324 SHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQ 383 L ++ + + + L + EER IARE+HDSLAQVL Y+ + Sbjct: 214 PFDEHDRSRLERFATQAALAIANARLHRRLMSLAVHEERERIAREMHDSLAQVLGYVITK 273 Query: 384 LTLLKRSI--PEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQ-ADLPSALREML 440 ++ L+ + P+ A A+ + +A DAY +RE + R L L ALR + Sbjct: 274 VSALRELLRQPDRLAEAERHLEQLERAARDAYADVREAILGLRTGLAPNRSLVDALRSYV 333 Query: 441 DTLQNQTSAKLTLDCRLPT---LALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTA 497 + Q+Q+ L L ++ LL+I++EA+ N KHA A+E+ V Sbjct: 334 ERWQDQSGVNARLIVEPSDDSLRGLQPMAELQLLRIVQEALTNVRKHARATEVTVQLARL 393 Query: 498 PDGNHTVYIRDNGIGIGEPKEPEG---HYGLNIMRERAERLGGTLTFSQPSGGGTLVSIS 554 DG V + DNGIG G +GL MRERAE +GG L + G GT V Sbjct: 394 -DGTVCVRVADNGIGFDPGALERGQFPRFGLATMRERAEAVGGRLRVTSLPGQGTTVEAV 452 Query: 555 FRSA 558 Sbjct: 453 LPVG 456 >UniRef50_B9LCJ4 GAF sensor signal transduction histidine kinase n=3 Tax=Chloroflexus RepID=B9LCJ4_CHLSY Length = 731 Score = 227 bits (580), Expect = 7e-58, Method: Composition-based stats. Identities = 60/258 (23%), Positives = 111/258 (43%), Gaps = 10/258 (3%) Query: 307 LPVTMQETVYGELHWQNSHVS----SSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEER 362 +P+ G L+ ++ + +L +V+ ML + + + QQ +EER Sbjct: 464 VPLISNGKTLGVLNIESPERAGLTEEDAAVLETVADMLAGAVENGRLYQRAQQAAALEER 523 Query: 363 ATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTT 422 +ARELHDS++Q L + + + + A +++ + A ++R L+ Sbjct: 524 NRLARELHDSVSQQLFSMTLTAQAARSQFERNPARVPALLDRLHETATAALAEMRALIFQ 583 Query: 423 FR-LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNA 481 R L+ L +A+++ L ++ ++ L+ ++ L +I++EA+ N Sbjct: 584 LRPPALRDQGLVAAIQQHAQHLAHREGLRIELNVIGDERH-ARGIEQPLFRIVQEALNNI 642 Query: 482 MKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEG---HYGLNIMRERAERLGGT 538 +KHA A + + D + + D+G G P G H GL MRERA LGG+ Sbjct: 643 VKHAAARNVQIMLEFNAD-QVAIRVIDDGKGFDPAARPSGEGRHLGLLSMRERAAELGGS 701 Query: 539 LTFSQPSGGGTLVSISFR 556 G G V + Sbjct: 702 FNVHSRPGAGAEVEVVVP 719 >UniRef50_C6CGT0 PAS/PAC sensor signal transduction histidine kinase n=11 Tax=Enterobacteriaceae RepID=C6CGT0_DICZE Length = 546 Score = 227 bits (579), Expect = 9e-58, Method: Composition-based stats. Identities = 68/318 (21%), Positives = 133/318 (41%), Gaps = 8/318 (2%) Query: 240 LHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEY-LELNVGENWRISEGQP 298 L + E L+ + L + C + ILQ+V+ + +E + E+ ++ + Sbjct: 232 LAHLRFTAEQLH--GRRLTDLLPNARCAQRILQLVQMVVDTQSSVEGELEEDIGMTTTRH 289 Query: 299 NPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLL 358 ++ +P Q G+L + + + + + + +++ Sbjct: 290 RVIHHIRCVPEFDQR---GKLISILTVGRDITAIRYAEKKLEDSHMQL-RLLARQREISR 345 Query: 359 MEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRE 418 EER IARE+HD L Q L+ +R+ L+L++ DN + + + + + +R Sbjct: 346 EEERKHIAREIHDELGQHLTSMRMSLSLMRMQFARDNPHMLTQLQNLMALSDKTIQVVRH 405 Query: 419 LLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAV 478 + T R + L AL + D Q L P + L+ + ++++E++ Sbjct: 406 VATRLRPNVLDMGLTPALEWLRDDFIRQYRCPCLLHAPEPEVVLNDECATAAFRVVQESL 465 Query: 479 LNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGT 538 N +HA A+++ +S +G + + DNG G +GL M+ER LGG Sbjct: 466 TNIARHAEATQVVISLE-NREGLIVLSVHDNGKGFDAQTRKPNAFGLMSMKERGRMLGGE 524 Query: 539 LTFSQPSGGGTLVSISFR 556 + G GTLV ++F Sbjct: 525 VVIESQPGAGTLVRLTFP 542 >UniRef50_Q1H473 Signal transduction histidine kinase, nitrate/nitrite-specific, NarQ n=1 Tax=Methylobacillus flagellatus KT RepID=Q1H473_METFK Length = 603 Score = 227 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 132/595 (22%), Positives = 226/595 (37%), Gaps = 56/595 (9%) Query: 2 IVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQ 61 +++ + +L+++ +L L A MQ ++ Sbjct: 22 MLRHALYLRFITLLACTAILAVMMQAGSLFLLDYIPASQSA--------MQ--QVAQRKL 71 Query: 62 SGSPQLNAHRQLFQQA---LHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDL 118 + L+ Q Q A +H+ + + + A L + E G+ Sbjct: 72 EWARFLDNPSQDRQPAPWNVHTLTGGENPHGWYAGHLSGKLAKLVEDVREQERTYHLGNA 131 Query: 119 PWYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVA 178 + ++ D + L+ AE K ++V + L G + + + IR ++ Sbjct: 132 ARDEWQPQRMLDSHDALLDGLRRDAEEKQAVLVMLQLMGLLLLLCCLGAMALLIRQVLID 191 Query: 179 PLNQLVTAS--QRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEK 236 + LV Q + +EL L + S+++ E + Sbjct: 192 RIAGLVALLPNQALSQQD-------RRDLDELSQLESLVQEFSAQMQGFKAETEWFNRTR 244 Query: 237 TRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLEL-------NVGE 289 + L R L+ A N S ++ + ++ + + + L G Sbjct: 245 SDLLRRMLRAHTFLHDLVVAFNDSVVNESSLKTMIYAMESSLDLRNVALHFMLDGGEAGG 304 Query: 290 NWRISEGQPNPELPMQI--------------------------LPVTMQETVYGELHWQN 323 + LP + P T+ E Sbjct: 305 ERLLFSQHAPGALPEGVSRDLAVKRSAKFLVADGAECIAATFACPGDNSGTLLLEAKPGQ 364 Query: 324 SHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQ 383 S L + +L L ++ ++L L EERA IARELHDSLAQ L+Y++IQ Sbjct: 365 EFHESDITLAEITAQLLSLVLGAQSREEQARRLALFEERAAIARELHDSLAQSLAYMKIQ 424 Query: 384 LTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTL 443 + L+ I + + L+ AYR+LRELL+TFR+ + L A++ +D Sbjct: 425 IARLQTQGSGGQHDTNEITTELREGLDTAYRELRELLSTFRMHMDVRGLGFAIQAAIDEF 484 Query: 444 QNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHT 503 +++S +TLD RL L + H+L +IREA+ N ++HA A + V+ P Sbjct: 485 SHRSSVSITLDNRLVNCRLTVNEEFHILHVIREALSNIIRHAGAKNVVVALAYTPGSTVV 544 Query: 504 VYIRDNGIGI-GEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRS 557 V I D+G+GI + GHYG +IMR+RA LGG +T S GGT V + F Sbjct: 545 VTIDDDGVGIPATATDEPGHYGQSIMRDRAYSLGGDITISARRQGGTRVRLIFTP 599 >UniRef50_C0N6H4 Putative uncharacterized protein n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N6H4_9GAMM Length = 570 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 90/438 (20%), Positives = 165/438 (37%), Gaps = 26/438 (5%) Query: 139 LQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSP 198 +Q +ER + + ++L G+ IF V L + PL +L+ A E G Sbjct: 136 MQEISERWLDIRSILAL--GLVIFVFVSIFLYWGVDWFLRPLQRLLQALSGFERGDLHLR 193 Query: 199 PLDTNLPNELGLLAKTFNQMSSELHKLYRS---LEASVEEKTRDLHEAKRR--LEVLYQC 253 + L E+ ++ TFN+M L L V + + + Sbjct: 194 LPNFTLA-EMNQISHTFNRMGQALELSTAENQRLAMLVRQSGDAILSLDHAGNITFCNST 252 Query: 254 SQALNTSQIDVHCFRHILQIVRDNEAAEYLEL----NVGENWRISEGQPNP---ELPMQI 306 ++ L SQ + + + N + + EN +P+ +L + Sbjct: 253 AERLFASQTPILKGESLAHLGFANHYKQISHILENCESTENMETVLVRPDGSQVDLLLST 312 Query: 307 LPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIA 366 +P++ E L ++ + + L + ER +A Sbjct: 313 VPLSDNEDRVIGLICTLRDITELKQ-----AEAARNQLRETRLLAKHMDEAQEAERRHLA 367 Query: 367 RELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLT 426 RELHD L Q L+ ++ L++ + + Y + ++T R + Sbjct: 368 RELHDELGQCLTAIKTDAVLIRNRTETTEPRVFNSAQAIIDTASHIYDVVHNMITRLRPS 427 Query: 427 -LQQADLPSALREMLDTLQNQ-TSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKH 484 L L L + + + Q++ T+ LD L+ M + + ++++EA+ NA++H Sbjct: 428 PLDDLGLVPTLEQCIASWQSRETTINFQLDVNGTLNNLNEIMNMTVFRVVQEAITNAVRH 487 Query: 485 ANASEIAVSCVTA---PDGNHTVYIRDNGIGIGEPK-EPEGHYGLNIMRERAERLGGTLT 540 A+ASEI V D + I+DNG G+ + +GL MRERA+ LGG Sbjct: 488 ADASEIKVKVSAEQGSEDDKLIIDIQDNGKGMVVKDFHSDVDFGLLGMRERAQSLGGKFE 547 Query: 541 FSQPSGGGTLVSISFRSA 558 + G G + I+ Sbjct: 548 LNSEPGAGVRILITIPLG 565 >UniRef50_C1CWD4 Putative histidine kinase, classic; putative membrane protein n=1 Tax=Deinococcus deserti VCD115 RepID=C1CWD4_DEIDV Length = 575 Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats. Identities = 70/258 (27%), Positives = 118/258 (45%), Gaps = 7/258 (2%) Query: 307 LPVTMQETVYGELH--WQNSHVSSSEPL--LNSVSSMLGRGLYFNQAQKHFQQLLLMEER 362 LP + G L +Q +E L L S++ G L+ +Q + +ER Sbjct: 309 LPPSAGTLDGGTLRAVYQGGTRPGAEELAFLLSIADHAGTALHASQLIERAGARAGEQER 368 Query: 363 ATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTT 422 A +ARELHDS+AQ L + + + ++ D A+ + + +++ LL + Sbjct: 369 ARLARELHDSVAQALYGITLGAKTARATLDRDPGRARESLDYTIRLAEGGVSEMKALLFS 428 Query: 423 FRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNA 481 R L++ L +AL + L+ + ++ + R L Q ++ +EA+ N Sbjct: 429 LRPDALEEGGLIAALTQHAHALEARHGLRVHAELRAEP-HLTPDAQAAAYRVAQEALHNV 487 Query: 482 MKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTF 541 +KHA A+++ + CV G TV +RD+G G + G G MRERA GGTL Sbjct: 488 VKHARATQVWL-CVHESLGVVTVSVRDDGRGFDPASQGRGTLGQRSMRERAAGAGGTLDV 546 Query: 542 SQPSGGGTLVSISFRSAE 559 G GT+V++ +A Sbjct: 547 QSAPGEGTIVTLRIPAAS 564 >UniRef50_Q1IWU8 Multi-sensor signal transduction histidine kinase n=3 Tax=Deinococcus RepID=Q1IWU8_DEIGD Length = 574 Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats. Identities = 76/356 (21%), Positives = 145/356 (40%), Gaps = 27/356 (7%) Query: 217 QMSSELHKLYRSLEASVEE--KTRDLHEAKRRLEVLY--QCSQALNTSQIDVHCFRHILQ 272 M L ++ R++ V + L + L + Y ++ + + + Sbjct: 232 NMRRLLARVTRNMAERVRAGARAAYLRDQDGLLRLEYAQHAGGESSSGALAPAFVERVAE 291 Query: 273 IVRDNEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETVYGELHWQNSHVSSSE-- 330 A++ V R + G P+ E + G L ++ + + Sbjct: 292 AGMPLVASQQEAAEVFPEARSALG----------FPMRDDEGLVGVLVLGDARPEAFDGV 341 Query: 331 --PLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLK 388 PLL ++ + +A + ++L + +ERA IARE+HD +AQ L++ ++L L+ Sbjct: 342 RLPLLALLAGQATLAVRNARAYLYSEELAISDERARIAREIHDGVAQSLAFCALKLDLVA 401 Query: 389 RSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQT 447 R + D A++ + + L + R++R + R L++ L +R ++ Q Sbjct: 402 RQLHSDPEKAEAEVKAATGLLREQIREVRRSIFALRPIDLERYGLLETVRRYVEDFGQQN 461 Query: 448 SAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIR 507 + + L+ + L + + +I++E++ N KHA A E+ V+ T+ ++ Sbjct: 462 NLRTVLNVTGD-IHLAPGDEAVVFRILQESLNNVAKHARAREVVVTL--HGGERVTLRVQ 518 Query: 508 DNGIGIGEPK-----EPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSA 558 D+G G + G GL MRER E GG G GTLV A Sbjct: 519 DDGQGFDPEQISGRVSSAGGLGLMQMRERVESRGGNYRVLSSPGHGTLVEAEVPQA 574 >UniRef50_C1F9F5 Two component regulator propeller/histidine kinase domain protein n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F9F5_ACIC5 Length = 1025 Score = 225 bits (573), Expect = 4e-57, Method: Composition-based stats. Identities = 61/203 (30%), Positives = 102/203 (50%), Gaps = 4/203 (1%) Query: 357 LLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQL 416 ++ ER IARE+HD+LAQ + + +QL ++ R +P A+ + + + Sbjct: 816 AVLRERTRIAREIHDTLAQGFAAVSVQLEVVSRLLPNATEGARHALDTARSLARSSLQDA 875 Query: 417 RELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIR 475 R + R + +Q DL + LR++ D L + K L+ L +++ L +I + Sbjct: 876 RTSIWDLRSQSSEQEDLATRLRKLADHLCAPANIKAQLEVNGAYRPLTPEVETELTRIAQ 935 Query: 476 EAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGI--GEPKEPEGHYGLNIMRERAE 533 EA++NA++H+ + IA+ + + +RDNG G P GHYG+ M ERAE Sbjct: 936 EAIVNAVRHSETASIALRLSFH-ERQIELSVRDNGRGFSGAPPAARPGHYGITGMHERAE 994 Query: 534 RLGGTLTFSQPSGGGTLVSISFR 556 R+GG LT G GT V ++ Sbjct: 995 RIGGKLTIESRPGEGTEVHLTLP 1017 >UniRef50_A5UUR7 Multi-sensor signal transduction histidine kinase n=2 Tax=Roseiflexus RepID=A5UUR7_ROSS1 Length = 469 Score = 225 bits (573), Expect = 5e-57, Method: Composition-based stats. Identities = 65/278 (23%), Positives = 120/278 (43%), Gaps = 14/278 (5%) Query: 302 LPMQILPVTMQETVYG--ELHWQNSHV--SSSEPLLNSVSSMLGRGLYFNQAQK------ 351 +LP+ + G ELH ++S S LL ++++ + + + + Sbjct: 191 CACLVLPLHDGMALLGWIELHLEDSLPVASDELALLETIANEVAEAIASARRRSREERAI 250 Query: 352 HFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALND 411 + + + EERA IAR++HD +AQ L+++R+++ L I D ++ + + L + Sbjct: 251 YQLERAIAEERARIARDIHDGIAQSLAFMRMRVDLWLDWIEHDPQRLRAELLELKTTLRE 310 Query: 412 AYRQLRELLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHL 470 R+LR + R + LR + Q + + +D + +++ Sbjct: 311 QIRELRRAIFALRPVQFDELGFVGGLRRYIVEFAGQHNWDIDVDLTGTPSTIPPEIEAVA 370 Query: 471 LQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEP--EGHYGLNIM 528 ++++EA+ N KHA A+ + V +G + +RD+G G P GH GL M Sbjct: 371 FRVVQEALTNVAKHAAATRVEVMIGRVDEG-LQIVVRDDGRGFDPGALPDAPGHVGLRQM 429 Query: 529 RERAERLGGTLTFSQPSGGGTLVSISFRSAEGEESQLM 566 RER L G LT G GT + G + + Sbjct: 430 RERLAALRGQLTILSRPGAGTELRAWIPLPMGAREKAV 467 >UniRef50_D1CB59 GAF sensor signal transduction histidine kinase n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CB59_THET1 Length = 464 Score = 224 bits (572), Expect = 5e-57, Method: Composition-based stats. Identities = 82/418 (19%), Positives = 150/418 (35%), Gaps = 21/418 (5%) Query: 155 LAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKT 214 A +G+ L F V +++L + ++ EL L Sbjct: 42 WAVDVGVVILTFIAALIFSEVVFGIVSRLQAGLAQQNKELLALHQAGLDIAGELNL---- 97 Query: 215 FNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIV 274 S L K+ V + L V + + + Sbjct: 98 ----ESVLQKIVDQARELVGARYGALLTINESGLVDTYITSGFSPGGVKASELGAFTSYT 153 Query: 275 RDNEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETVYGELHWQN-----SHVSSS 329 D++ V + +S + +P+ + V G L Sbjct: 154 SDHKPIRISGKEVVAHI-LSLPSDQAAHSLLTVPILSGDKVLGNLFVAGKESAREFTEED 212 Query: 330 EPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKR 389 E L ++ + + + + L + EER IARE+HDSLAQVL+Y+ + + Sbjct: 213 EETLARFATQAALAIENARLHEQVKALAIAEERERIAREMHDSLAQVLTYVTTKGHATQM 272 Query: 390 SIPE-DNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQ-ADLPSALREMLDTLQNQT 447 + + A ++ A AY +RE + R + ++ +RE Q+Q+ Sbjct: 273 LLERGELDKASKNLSQLVDAARSAYSDVREQILALRTSQERNRGFIDVIREYAQKWQDQS 332 Query: 448 SAKLTLDC-RLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYI 506 + LD + + L + +++I++EA+ N KH+ A++ ++ D V I Sbjct: 333 GIPVELDIQQGLNIRLTPTTDLQVIRIVQEALSNIRKHSGATQAWITI-YKRDDRLVVTI 391 Query: 507 RDNGIGIGEPKEPEG---HYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGE 561 +DNG G +GL +MRERAE +G L GT + + ++ E Sbjct: 392 KDNGAGFDPSSLTRSDFPRFGLAMMRERAESVGAELNIDTGPRQGTEIRLRIPLSKSE 449 >UniRef50_B6JD37 Signal transduction histidine kinase containing PAS/PAC sensor domain n=1 Tax=Oligotropha carboxidovorans OM5 RepID=B6JD37_OLICO Length = 358 Score = 224 bits (571), Expect = 7e-57, Method: Composition-based stats. Identities = 61/214 (28%), Positives = 103/214 (48%), Gaps = 3/214 (1%) Query: 348 QAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQ 407 +A H+ Q + EERA IARELHD L Q L+ +++ L L+ + DN + + Sbjct: 137 RALSHYLQTVREEERAHIARELHDELGQTLTAMKMDLVWLRERLSADNGALKPRVERLVG 196 Query: 408 ALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQM 466 + + L+ + + R L + L SA+ + DT+ Q++ + L L ++ Sbjct: 197 LADRSVTDLQRIASDLRPLMLDELGLVSAVHWLTDTVAGQSNLNINLSFDREDLTYGPEV 256 Query: 467 QVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGE-PKEPEGHYGL 525 +I++EA+ N ++H+ A + ++ A D + I D+G G+ P H+GL Sbjct: 257 STAAFRIVQEALTNIVRHSGARHVTITACHAED-ELHIEIVDDGCGLPPTAASPRLHHGL 315 Query: 526 NIMRERAERLGGTLTFSQPSGGGTLVSISFRSAE 559 M ERA LGG++ GGGT V S + Sbjct: 316 LGMHERANMLGGSVAVESAPGGGTRVRASLPLKQ 349 >UniRef50_Q47G83 PAS n=1 Tax=Dechloromonas aromatica RCB RepID=Q47G83_DECAR Length = 683 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 65/314 (20%), Positives = 126/314 (40%), Gaps = 16/314 (5%) Query: 257 LNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETVY 316 + + + L + A L + E W+ P+ + I+ + + Sbjct: 371 IRAADVLDQNIEQFLLRSQPKIVASNLLGYLREAWQ----SPSDLALLGIVSLVRDDQDI 426 Query: 317 GELHWQNSHVSSSEPLLNSVSSMLG----RGLYFNQAQKHFQQL------LLMEERATIA 366 +S E L+ ++ L L ++ + Q+L + +ER I+ Sbjct: 427 PVELSLSSTTVRGERLVTAIFRDLSERQRTELELLKSNRQLQELTASLESVREQERLRIS 486 Query: 367 RELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRL- 425 RELHD L Q L+ LR++++ L + + + + ++ + +R + + R Sbjct: 487 RELHDELGQALTGLRMEISWLGGRLLTTQPELEQKVVSIKKLIDGTIKSVRRISSELRPL 546 Query: 426 TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHA 485 L +A +D +T+ K+TL+ + L ++++E++ N +HA Sbjct: 547 VLDDLGFAAAANWYVDQFATRTNLKVTLELPNDDPENGGTVATTLFRVLQESLTNVARHA 606 Query: 486 NASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPS 545 A + + + A D + IRD+G G + G GL MRER + LGG+ + Sbjct: 607 GARNVDIRLLQAND-QWRLEIRDDGQGFDQSSAKMGGIGLIGMRERVQALGGSFELTAAP 665 Query: 546 GGGTLVSISFRSAE 559 G GTL+ I Sbjct: 666 GQGTLIEICIPVES 679 >UniRef50_A6SWF1 Sensory box histidine kinase n=1 Tax=Janthinobacterium sp. Marseille RepID=A6SWF1_JANMA Length = 626 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 59/232 (25%), Positives = 103/232 (44%), Gaps = 7/232 (3%) Query: 334 NSVSSMLGRGLYFNQAQKHFQQLL------LMEERATIARELHDSLAQVLSYLRIQLTLL 387 +++S++ Q+QK +QL + +ER IARELHD LAQ LS LR+ ++++ Sbjct: 396 RNITSIIEAENQLRQSQKLLRQLADRSETSIEDERKHIARELHDDLAQHLSALRMNVSVM 455 Query: 388 KRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQT 447 K ++ + L+ + R ++T R T + AL ++ Sbjct: 456 KLEFGHLSSAFSGQAETMIERLDATIKIARNVITALRPTALDMGIVQALEWLVKDFSTHK 515 Query: 448 SAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIR 507 L L L + + +I +E++ N +HA A + V+ + DG + IR Sbjct: 516 EISCRLHIHDENLILSDRSATAIFRIAQESLRNISRHAEACNVDVNL-SHKDGMCLLAIR 574 Query: 508 DNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAE 559 D+G G P +GL ++ER LGG + G GT + ++ + E Sbjct: 575 DDGRGFNTTNVPFNSFGLMGIKERVLILGGKVEIESEEGQGTTIRVNIPTTE 626 >UniRef50_B2VGC1 HrpX protein (Hrp cluster) n=6 Tax=Enterobacteriaceae RepID=B2VGC1_ERWT9 Length = 494 Score = 222 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 52/220 (23%), Positives = 97/220 (44%), Gaps = 2/220 (0%) Query: 348 QAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQ 407 + +++ EER IARE+HD L Q L+ LR+ +++L+ +DN + Sbjct: 274 RLLARQREVSREEERKRIAREIHDELGQHLTSLRMGISMLRIQFSKDNPLLHERVVHLMG 333 Query: 408 ALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQT-SAKLTLDCRLPTLALDAQM 466 + + +R + T R + L AL + D ++ L + L + Sbjct: 334 LTDKTIQVVRNVATRLRPNVLDMGLTPALEWLRDEFISRHIGCCCRLITPEKEVRLGDEQ 393 Query: 467 QVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLN 526 ++ +E++ N +HA ASE+ + V G+ + +RDNG G + +GL Sbjct: 394 ATAAFRVAQESLTNISRHAQASEVIILLVRHA-GSVVLTVRDNGRGFDCQNGKDNAFGLM 452 Query: 527 IMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEESQLM 566 MRER LGG + GT +S++ + +++ + Sbjct: 453 SMRERGRMLGGRVDIESKPSIGTCISLTIPIVQDADNKKV 492 >UniRef50_A9WFF8 Histidine kinase dimerisation and phosphoacceptor region n=3 Tax=Chloroflexus RepID=A9WFF8_CHLAA Length = 466 Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats. Identities = 80/373 (21%), Positives = 144/373 (38%), Gaps = 55/373 (14%) Query: 238 RDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHIL----QIVRDNEAAEYLE--------- 284 L E+ RLE+LY+ +Q + +S + + ++V A L Sbjct: 86 AALRESNERLELLYEINQRVASSATLDEVLDYAITLPARLVNAGAATIVLMDEQGQPYTA 145 Query: 285 ----LNVGENWRISEGQ------PNPELPMQILP--------------VTMQETVYGELH 320 ++ GE R P+ P+ + P V G + Sbjct: 146 RVTGIDAGELERARTAFLLRLMTSPPDQPVVLSPHLGCNWAACLVLPLVEHDAHPIGWIE 205 Query: 321 ---------WQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQ------QLLLMEERATI 365 + + +PLL +V+ L + ++ + + + ER I Sbjct: 206 AFLKEGPATLRETRQPVLQPLLATVAGELTEAVVNSRRRDRAIASIAAVERAISAERTRI 265 Query: 366 ARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRL 425 AR+LHD +AQ L+++R+++ L + + ++ + A F L +LR + R Sbjct: 266 ARDLHDGVAQSLAFMRMRIDLWEDWLTQEPERLREEFATFKANLRRQIEELRRAIFALRP 325 Query: 426 -TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKH 484 + Q ALR ++ Q +++D L +++ + ++EA+ N KH Sbjct: 326 IEIGQLGFAGALRRFINEFAEQQDWDVSIDFAELPPDLPPVLELAAFRFVQEALNNVAKH 385 Query: 485 ANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPE-GHYGLNIMRERAERLGGTLTFSQ 543 A A + + G +++RD+G+G +EP GH GL MRERA L G Sbjct: 386 AQARRVWIKLGVRDQG-LIIHVRDDGVGFNPGEEPPAGHLGLRQMRERATALDGQCMIMS 444 Query: 544 PSGGGTLVSISFR 556 G GT V + Sbjct: 445 RPGDGTEVRVWLP 457 >UniRef50_B4WPC3 GAF domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WPC3_9SYNE Length = 2009 Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats. Identities = 59/273 (21%), Positives = 114/273 (41%), Gaps = 24/273 (8%) Query: 309 VTMQETVYGELHWQNSHVS----SSEPLLNSVSSMLGRGLYFNQAQKHFQQLLL----ME 360 + + G + + ++ + ++++ ++ Q + L E Sbjct: 1725 LKVGSQPIGLIGFAFRSIAILTTEQIEFIQALTNQATLSIHLTQLADQSKAAALSVALTE 1784 Query: 361 ERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSI--------------MADFS 406 ER +ARE+HD+LAQ + + +QL + ++ + A+ + + Sbjct: 1785 ERNRLAREIHDTLAQAFTGVSLQLEAARSALTKAAASVAAERDPLPPAFDQTQTFILRAR 1844 Query: 407 QALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQ 465 + R + R L+ LP+ALR++L+ + + T L Sbjct: 1845 DLSRQGLSEARRSVRALRSQALETDTLPTALRKVLNQINHDTHLDTQFYLEGTPEPLPDD 1904 Query: 466 MQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGL 525 +Q+HLL+I +EA+ NA++HA A++I ++ P + I D+GIG + +GL Sbjct: 1905 IQLHLLRISQEAITNALRHAQATQIDLTLAFEP-REIQLRIVDDGIGFTPSSQAGSGFGL 1963 Query: 526 NIMRERAERLGGTLTFSQPSGGGTLVSISFRSA 558 +RER R GT S G GT + ++ Sbjct: 1964 VGIRERVARFHGTFQLSSSPGVGTTIEVTVPFP 1996 >UniRef50_UPI0001746019 hypothetical protein VspiD_01665 n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001746019 Length = 872 Score = 221 bits (564), Expect = 5e-56, Method: Composition-based stats. Identities = 62/267 (23%), Positives = 117/267 (43%), Gaps = 8/267 (2%) Query: 306 ILPVTMQETVYGELHWQNSHVSSSE----PLLNSVSSMLGRGLYFNQAQKHFQQLLLMEE 361 ++P+ + V G L + + + L +++ + L + + +L ++ E Sbjct: 608 VVPMLLAGRVTGFLSIRFTRPPHFQTEEIELAQALAHQVILALQLIRLTQEGHRLAVLAE 667 Query: 362 RATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATA-QSIMADFSQALNDAYRQLRELL 420 R +ARELHD+LAQ ++ + +QL L + + A + R+ R + Sbjct: 668 RNRMARELHDTLAQGITAVIMQLELAEDASARGLVEAVDPHVKRARDLARQTLREARRSV 727 Query: 421 TTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVL 479 R L+ DLP AL + + + + + R + + + ++L+I +E + Sbjct: 728 RAMRPQALKAQDLPQALGALFKQMTEGSGMQAEVILRGIPCHIPTRCEENILRIGQEVLT 787 Query: 480 NAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTL 539 NA++HA AS + AP +++ DNG G P+ +GL +RER E +GG L Sbjct: 788 NALRHAGASRFTGRLIFAPTA-ILLHLHDNGRGFD-PQGQHDGFGLTGIRERVEGMGGRL 845 Query: 540 TFSQPSGGGTLVSISFRSAEGEESQLM 566 G GT + I + E + + Sbjct: 846 CLRSRPGQGTSIRIRLGRLKAESGKFV 872 >UniRef50_B4D830 Integral membrane sensor signal transduction histidine kinase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D830_9BACT Length = 725 Score = 221 bits (563), Expect = 6e-56, Method: Composition-based stats. Identities = 67/253 (26%), Positives = 116/253 (45%), Gaps = 12/253 (4%) Query: 320 HWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQ---------KHFQQLLLMEERATIARELH 370 W + + + ++ M + + ++ ++ +ER IARELH Sbjct: 462 WWTLRRLFWALGFIAGLALMAIVWAALLRRRVTEQTKTIATQIERAVIKDERQRIARELH 521 Query: 371 DSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFR-LTLQQ 429 D++ Q L+ L +QL ++ + A + + + L + R + R + L+Q Sbjct: 522 DTIEQELAGLSVQLRNARQRLLNMPEQAGTAIELAERMLRHCREEARTSIRDLRSVALEQ 581 Query: 430 ADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASE 489 LP AL E L L + A+L+ + R +L +++H+L+I ++AV NA++HA E Sbjct: 582 RGLPGALEETLAPLVEGSGARLSFEARGRARSLAGPVEIHILRIAQQAVANAVQHAAPKE 641 Query: 490 IAVSCVTAPDGNHTVYIRDNGIGIGEPK-EPEGHYGLNIMRERAERLGGTLTFSQPSGGG 548 I V D T+ +RD+G G P GH+G+ +RERA ++ TLT G G Sbjct: 642 IRVHLEYLADA-VTLEVRDDGRGFDPAAPAPRGHFGILGIRERANKIHATLTVDSAPGAG 700 Query: 549 TLVSISFRSAEGE 561 T + A E Sbjct: 701 TTIRAVVPIAAVE 713 >UniRef50_Q8YV44 Two-component sensor histidine kinase n=3 Tax=Cyanobacteria RepID=Q8YV44_ANASP Length = 944 Score = 221 bits (563), Expect = 7e-56, Method: Composition-based stats. Identities = 78/348 (22%), Positives = 143/348 (41%), Gaps = 20/348 (5%) Query: 220 SELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQ--------CSQALNTSQIDVHCFRHIL 271 +++ +Y L + + L ++ L L+ + + R + Sbjct: 602 ADISDVYDELRLRKQAEVA-LQASEAELRSLFSAIPDPLCVVTAQGRVIETVAGNPRQLY 660 Query: 272 QIVRDNEAAEYLELNVGENWRISEGQ-PNPELPMQILPVTMQETVYGELHWQNSHVSSSE 330 V + ++ E G Q+L V + G W ++ ++ Sbjct: 661 SSVEEKVGKTLHQIFEEEQADKFMGYIQQVLRTQQVLTVEYSLQIDGRETWFSARIAPIR 720 Query: 331 PLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRS 390 + + R + QK + ++EER +ARE+HD+LAQ + + Q+ K+ Sbjct: 721 ---HEQVIWIARDITL---QKRAEAASILEERNRMAREIHDTLAQAFTGILAQVGAAKQV 774 Query: 391 IPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLT-LQQADLPSALREMLDTLQNQT-S 448 + +D +S + + + R + R L++ L SAL ++ L+ Sbjct: 775 LTDDLEATESHLDLIKELARTGLVEARRSVVALRPQLLEEGSLQSALHRLVAQLRTAAID 834 Query: 449 AKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRD 508 L + +L +++ +LL++ +EA+ NA++HANA EI V V D + +RD Sbjct: 835 TTLYYEIEGAVYSLPTEIESNLLRMGQEALTNAIRHANADEIRVELVYDRD-RFCLRVRD 893 Query: 509 NGIGIGEPKEPEG-HYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 NG G G P +GL M ERAER+G LT G GT + ++ Sbjct: 894 NGQGFGVGSIPASEGFGLLGMSERAERIGAQLTIRSQPGQGTEIVVTV 941 >UniRef50_O32198 Sensor histidine kinase liaS n=5 Tax=Bacillus RepID=LIAS_BACSU Length = 360 Score = 220 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 55/231 (23%), Positives = 106/231 (45%), Gaps = 4/231 (1%) Query: 335 SVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPED 394 V+S+ + Q ++ ++ EER +AR+LHD+++Q L + + + + + + Sbjct: 124 QVASLQKLSNERAEWQAQMKKSVISEERQRLARDLHDAVSQQLFAISMMTSAVLEHVKDA 183 Query: 395 NATAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTL 453 + + +A ++R LL R TL+ L L E+LD + + + Sbjct: 184 DDKTVKRIRMVEHMAGEAQNEMRALLLHLRPVTLEGKGLKEGLTELLDEFRKKQPIDIEW 243 Query: 454 DCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGI 513 D + A+ ++ HL +I++EA+ N +H+ AS++ V + + + + DNG G Sbjct: 244 DIQ--DTAISKGVEDHLFRIVQEALSNVFRHSKASKVTV-ILGIKNSQLRLKVIDNGKGF 300 Query: 514 GEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEESQ 564 + YGLN M+ERA +GG G GT + + E+ + Sbjct: 301 KMDQVKASSYGLNSMKERASEIGGVAEVISVEGKGTQIEVKVPIFPEEKGE 351 >UniRef50_A6CIM0 Multi-sensor signal transduction histidine kinase n=1 Tax=Bacillus sp. SG-1 RepID=A6CIM0_9BACI Length = 619 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 60/269 (22%), Positives = 122/269 (45%), Gaps = 13/269 (4%) Query: 307 LPVTMQETVYGEL----HWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEER 362 P+ +++ G L + S + ++S+ L + K ++ +L+EER Sbjct: 344 FPLRVEKETVGMLVAARNRTKSFTDEDVQSIATLSNQLAVTIKTRMLFKEKEKRILLEER 403 Query: 363 ATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTT 422 IAR++HD +AQ L+ ++L R + +M + L D+ R++RE + Sbjct: 404 NRIARDIHDGIAQTLAGAIMKLESAGRRFNKKPEETLKLMDESVYGLRDSLREVRESIYA 463 Query: 423 FRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNA 481 R ++ L A+ ++ ++ + ++ + R + L + ++ L I +E++ N Sbjct: 464 LRPYPTERVGLSKAVGSKIEAVKKEFDLNISFEIRGEEIELSSMVEKVLFDIFQESLQNV 523 Query: 482 MKHANASEIAVSCVTAPDGNHTVYIRDNGIGIG-----EPKEPEGHYGLNIMRERAERLG 536 +KHA AS I + ++ N + I+D+G+G H+G+ + + AE++ Sbjct: 524 IKHAKASSIEI-LLSYQSENILLRIKDDGVGFSLFQAMLNARERPHFGILQINDSAEKIN 582 Query: 537 GTLTFSQPSGGGTLVSISFRS--AEGEES 563 +L G GT V+I EGE+ Sbjct: 583 ASLQIDSKEGEGTEVTIIVPKMGLEGEKD 611 >UniRef50_C1XJE4 Histidine kinase n=2 Tax=Meiothermus RepID=C1XJE4_MEIRU Length = 529 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 83/357 (23%), Positives = 134/357 (37%), Gaps = 30/357 (8%) Query: 229 LEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEY--LELN 286 L A V R L LY+ QAL ++ + A + L Sbjct: 173 LAAEVAGALESARARSRDLLTLYEVDQALRAEANLGRLLERLMDRILAWAGATGGGVLLL 232 Query: 287 VGENWRISEGQPNPELPMQIL------------PVTMQETVY----------GELHWQNS 324 EN+ + N ELP PV ++E + G L Q Sbjct: 233 DEENFLQPQVLRNLELPPHAFMPDHRWKEALESPVFVRENLLAVPLREQSAIGLLLVQGE 292 Query: 325 HVSSSE--PLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRI 382 + + P L +++ + + QA ++L L EER IARE+HD +AQ L+++ + Sbjct: 293 AENLRQRLPFLRFLAAQVTLAVRNAQAYLRAEELALTEERNRIAREIHDGIAQALAFMAL 352 Query: 383 QLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALREMLD 441 +L L +R + D A + + L R++R + R L++ ++R Sbjct: 353 KLDLSERLLQTDPERALEELHQVKETLRAQIREVRRSIFALRPIDLERYGFLESVRRYAT 412 Query: 442 TLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGN 501 Q ++ L + L ++ ++++EA+ NA KHA + V + Sbjct: 413 AFAEQAGFRVRLSLP-EKIELSQASELVFFRVLQEALTNAAKHARPGLVQVKLTPLGERG 471 Query: 502 HTVYIRDNGIGI--GEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFR 556 + I DNG G G G +GL MRER E GG GT V Sbjct: 472 GVLEISDNGRGFKAGTSANGLGGFGLTQMRERVEARGGRFEVVSVENQGTTVRAELP 528 >UniRef50_Q3SG40 GAF Sensor Signal Transduction Histidine Kinase n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SG40_THIDA Length = 415 Score = 220 bits (560), Expect = 1e-55, Method: Composition-based stats. Identities = 77/260 (29%), Positives = 132/260 (50%), Gaps = 10/260 (3%) Query: 306 ILPVTMQETVYG--ELHWQNSHVSSSEP--LLNSVSSMLGRGLYFNQAQKHFQQLLLMEE 361 +P+ + V G L + HV + L S+S LG L + + ++ LM E Sbjct: 144 AVPLMHKNQVMGVYNLFLEEGHVVPEDVRLLFRSISEHLGIALENARLTRENMRISLMNE 203 Query: 362 RATIARELHDSLAQVLSYLRIQLTLLKRSIP-EDNATAQSIMADFSQALNDAYRQLRELL 420 R +A ++HDSLAQ L+Y +++LT+L ++ ED A A + D +A++ AY LR+L+ Sbjct: 204 RQMLANQIHDSLAQTLAYAKMRLTVLSDAMRHEDYAKANRFLGDVEEAVDLAYADLRDLI 263 Query: 421 TTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLN 480 T +R + L A++E+ + + +A + + + L ++ + II+E++ N Sbjct: 264 TQYRDRINPRGLVPAIQELAKGFRKKANADVDFLNLVQDVTLTPDEEIQVFHIIQESLYN 323 Query: 481 AMKHANASEIAVSCVTAPDGNHTVYIRDNGIGI----GEPKEPEGHYGLNIMRERAERLG 536 KHA A + ++ +G + V + D+G+G+ E +GL IMRERA RL Sbjct: 324 IAKHARARHVVITF-DLENGQYIVNVADDGVGVQKKHDESSTLGKSFGLTIMRERAARLN 382 Query: 537 GTLTFSQPSGGGTLVSISFR 556 G L GGT+V + F Sbjct: 383 GKLVVESRPAGGTVVRLVFP 402 >UniRef50_UPI00016987BE Periplasmic Sensor Signal Transduction Histidine Kinase n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI00016987BE Length = 263 Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 97/250 (38%), Positives = 148/250 (59%), Gaps = 4/250 (1%) Query: 318 ELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVL 377 E + + + LL +V+S + + +Q + L L+EER+ IARELHDSLAQ L Sbjct: 1 EFNVEQELEECQQRLLETVASHIAMAINLSQRVSQNRMLSLLEERSVIARELHDSLAQSL 60 Query: 378 SYLRIQLTLLKRSIPEDNATAQSIM--ADFSQALNDAYRQLRELLTTFRLTLQQADLPSA 435 SYL+IQ++ L++++ E+ A ++ ALN AYRQLRELLTTFRL + +A L +A Sbjct: 61 SYLKIQVSRLEKAVSEEQAKDDLLLISGVLRSALNGAYRQLRELLTTFRLRMSEAGLGAA 120 Query: 436 LREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCV 495 L E + + + ++ L R+ ++H++QIIREA+ N ++HANA+ V Sbjct: 121 LDETVREYRERGGLEIELIDRIANCRFSPNAEIHVIQIIREALSNVIRHANATRALVKIE 180 Query: 496 TAPDGNHTVYIRDNGIGIGEPKEPE--GHYGLNIMRERAERLGGTLTFSQPSGGGTLVSI 553 DG T+ + D+G+GIG +E + HYGL IM+ERA LG L ++P GGT V + Sbjct: 181 CDMDGIVTILVEDDGVGIGIDEEGDMMQHYGLPIMQERANWLGAELMINEPESGGTRVLL 240 Query: 554 SFRSAEGEES 563 SF A+ + + Sbjct: 241 SFSIADSDHT 250 >UniRef50_C1XM57 Signal transduction histidine kinase, COG4585 n=1 Tax=Meiothermus ruber DSM 1279 RepID=C1XM57_MEIRU Length = 430 Score = 218 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 63/228 (27%), Positives = 111/228 (48%), Gaps = 5/228 (2%) Query: 330 EPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKR 389 E L+ + + + ++ +Q ++EER +ARE+HD+LAQ + + +QL + Sbjct: 194 ELLIREIRAREELERTRRELEQTSRQAGILEERQRLAREIHDTLAQGFASIVVQLEAAE- 252 Query: 390 SIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLT-LQQADLPSALREMLDTLQNQTS 448 E A+A + QA + + R ++ R L+ LP AL+ +L Q ++ Sbjct: 253 MASEHEASATHYLEQARQAAREGLSEARRMVWALRPEILENTSLPEALQRLLQRWQQESG 312 Query: 449 AKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRD 508 + L +++V LL+I +EA+ N KHA A ++ D + ++D Sbjct: 313 VRTQFTLTGTPRPLHPELEVGLLRIAQEALTNIRKHAKARHANLTLSYLDD-LVLMDVQD 371 Query: 509 NGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFR 556 +G+G+ P G +GL +MRER E LGG +T G GT +++S Sbjct: 372 DGVGLQAPT--TGGFGLRLMRERVESLGGQMTLESEPGMGTTLAVSLP 417 >UniRef50_Q1CZ92 Sensor histidine kinase n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1CZ92_MYXXD Length = 1080 Score = 218 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 62/254 (24%), Positives = 108/254 (42%), Gaps = 17/254 (6%) Query: 321 WQNSHVSSSEPLLNSVSSMLGRGLYFNQA-QKHFQQL------LLMEERATIARELHDSL 373 W+ + L ++ + + L +A ++ ++L EER +ARELHD Sbjct: 820 WRTRLLVGRNLALRTLQAEREQALEEAEAGRERLRRLTMRLEAAKEEERKHLARELHDEF 879 Query: 374 AQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLT-LQQADL 432 Q L+ +++ L L+ ++A + + Q+R L R L + L Sbjct: 880 GQALTAVKLNLGLMNTFASPSVTRLPEVVALIDRLI----GQVRALSVDLRPPQLDELGL 935 Query: 433 PSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAV 492 +AL L + ++ +L +L + + +II+EAV NA++HA+A I V Sbjct: 936 VAALEWYLREVARRSGVELVFTASSAPPSLSKGRDIAVFRIIQEAVTNALRHASARRIDV 995 Query: 493 SCVTAPDGNHTVYIRDNGIGIGEPK----EPEGHYGLNIMRERAERLGGTLTFSQPSGGG 548 T + +RD+G G + G +G+ M+ER LGG + G G Sbjct: 996 RLETVG-CVIRLEVRDDGKGFDVNQVLMGRGPGSFGVFGMQERVRDLGGHFEVTSRPGEG 1054 Query: 549 TLVSISFRSAEGEE 562 T V R+ E E+ Sbjct: 1055 TRVVAEVRADERED 1068 >UniRef50_C4DRB4 Signal transduction histidine kinase, COG4585 n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DRB4_9ACTO Length = 422 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 59/211 (27%), Positives = 98/211 (46%), Gaps = 6/211 (2%) Query: 347 NQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFS 406 + + +Q + ERA +AR++HD++AQ L+ + QL + D + Sbjct: 211 ARLVEQARQAGVTAERARLARDMHDTVAQGLAGIVTQLETAE----ADPDDTARRLRIAR 266 Query: 407 QALNDAYRQLRELLTTFRLTL-QQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQ 465 D+ ++R + R L ADL AL +D +++ T + LDA Sbjct: 267 DLARDSLVEVRRSVAALRPALLDDADLAEALAREVDAWRHRNDIAATFTVTGTPVPLDAA 326 Query: 466 MQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGL 525 + +L++ +EA+ N +HA AS + V+ D + IRD+G G EP +GL Sbjct: 327 VDEAVLRVAQEALSNTARHAKASRLGVTLSYMED-MLVLDIRDDGEGFAVDAEPRQGFGL 385 Query: 526 NIMRERAERLGGTLTFSQPSGGGTLVSISFR 556 MR+R E+L G++ G GT VS+S Sbjct: 386 TAMRQRVEQLDGSVHIESKPGAGTAVSVSLP 416 >UniRef50_Q67L27 Two-component sensor histidine kinase n=1 Tax=Symbiobacterium thermophilum RepID=Q67L27_SYMTH Length = 536 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 71/268 (26%), Positives = 127/268 (47%), Gaps = 6/268 (2%) Query: 301 ELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLME 360 +P ++ P Q + G + V L N + + L Q + Q L ++E Sbjct: 260 AIPYRLGP-RSQGVLLGASRRPGALVDDDLRLFNHLGAYLSTAAENAQLLRDMQHLAVLE 318 Query: 361 ERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDN-ATAQSIMADFSQALNDAYRQLREL 419 ER +A E+HD + QVL++L ++L +++R++ +D+ ATA +A + A+ ++R Sbjct: 319 ERQRLAGEIHDHIGQVLTFLGMRLHVVERALAQDDLATAAEEVAGLRGVVASAHEEIRAS 378 Query: 420 LTTFR-LTLQQADLPSALREMLDTLQNQTSAKLTLDC-RLPTLALDAQMQVHLLQIIREA 477 L R ++ L R++LD +T + ++ P L L + L +I++EA Sbjct: 379 LYDLRNDAPARSPLMDRWRQLLDAFAARTGIAVRIETPHRPMLVLPPTTEAQLTRILQEA 438 Query: 478 VLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEG-HYGLNIMRERAERLG 536 + NA +H+ AS + V + I D+G G P+ H+GL +MRERA+ +G Sbjct: 439 LANAQQHSGASTVTVQ-ARVERATLYITIADDGCGFDPSVPPDPHHFGLALMRERAQAIG 497 Query: 537 GTLTFSQPSGGGTLVSISFRSAEGEESQ 564 L G GT +S+ +E + Sbjct: 498 ARLHIESARGRGTRISLEMPLPPRKEME 525 >UniRef50_B8G147 Multi-sensor signal transduction histidine kinase n=2 Tax=Desulfitobacterium hafniense RepID=B8G147_DESHD Length = 779 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 70/287 (24%), Positives = 130/287 (45%), Gaps = 24/287 (8%) Query: 301 ELPMQILPVTMQETVYGELHWQNSHVSSSEP----LLNSVSSMLGRGLY-------FNQA 349 L +P++ ++ V G L+ S++ S LLNS+ LG + N+ Sbjct: 484 ALSHVYVPLSYKDRVLGVLNIIASNLESFTKEDLNLLNSIGLQLGVAIENAELWVELNKK 543 Query: 350 QKHFQQL------LLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMA 403 + +QL EER I+RELHD +Q ++ L + L + + D A +++ Sbjct: 544 EMLRKQLLNKVITAQEEERKRISRELHDESSQSIAALGVGLKSVIEIMEFDKEYALTVLE 603 Query: 404 DFSQALNDAYRQLRELLTTFRLTL-QQADLPSALREMLDTLQNQTSAKLTLDCRLPTLAL 462 D + ++L +++ R +L L A+R +++ + T K + L L Sbjct: 604 DLKNNTSSILKELHQIIYDLRPSLLDDLGLLPAIRWYVESRLSNTGIKPHVAFTGDPLRL 663 Query: 463 DAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIG-----EPK 517 + ++ + +I++E++ NA+K++NA + + D + VYI D+G G K Sbjct: 664 TDETEITIFRIVQESITNAVKYSNAKNLYLGLEFGQD-SLFVYIEDDGDGFNIEKALAQK 722 Query: 518 EPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEESQ 564 + + +GL M ERAE +GG + S GT + + EE + Sbjct: 723 DGKESFGLLGMTERAELIGGEIEIKSRSNNGTRIELKLDYQNFEEDR 769 Score = 43.7 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 52/157 (33%), Gaps = 8/157 (5%) Query: 145 RKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNL 204 + + V + L + L + + PL +L + + R+ G + + Sbjct: 155 QWVYNVRKLMLNLTLYGVLLGAVAALILSTLITRPLKRLASYALRLGKGDLEEDIV-IRG 213 Query: 205 PNELGLLAKTFNQMSSEL---HKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQ 261 +E+ LA N+M +L ++ R E S + A + V T + Sbjct: 214 KDEIVELALCLNRMRKDLFTGMQMLRQSEESNRTLLEAISAAGEGIAVFQDNLNKKGTMK 273 Query: 262 IDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQP 298 + ++ AE LE+ E G+ Sbjct: 274 FVNEQYENL----TGYTKAELLEMEANEIIDSESGKQ 306 >UniRef50_C6BTX2 GAF sensor signal transduction histidine kinase n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BTX2_DESAD Length = 689 Score = 218 bits (555), Expect = 6e-55, Method: Composition-based stats. Identities = 61/260 (23%), Positives = 111/260 (42%), Gaps = 6/260 (2%) Query: 306 ILPVTMQETVYGELHWQN---SHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEER 362 ++P+ + G L N + + ++ ++ L ++ + ++L++ ER Sbjct: 425 VVPLLEGDKKLGLLMVSNKSGGFDHADKRIMEMFAAQAVLALRNSRMFEQSEKLVVQGER 484 Query: 363 ATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQ-SIMADFSQALNDAYRQLRELLT 421 +ARELHDS+ Q L + RS + A + R +R L+ Sbjct: 485 QRLARELHDSVTQALYAITFCSDAAVRSFESGKSGAAIEQLKALQGMAQQGMRDMRSLIF 544 Query: 422 TFRLT-LQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLN 480 L+ L A++ L++++ ++ L L +++ L +I EA+ N Sbjct: 545 DLHPPELESEGLVGAIQARLNSVEIRSGLGADLFVEGDERRLPLRVEEELFRIAIEALNN 604 Query: 481 AMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLT 540 + KH+ A + V V +G V I D+G G P G GL +RER ER+ L Sbjct: 605 STKHSKAESVTVK-VDFAEGKTVVQIIDDGQGFDIATLPTGGMGLRGIRERVERINAHLD 663 Query: 541 FSQPSGGGTLVSISFRSAEG 560 + SG GT++++ EG Sbjct: 664 INSESGKGTVLTVKVFDVEG 683 >UniRef50_Q7N5B4 Similar to nitrate/nitrite sensor protein NarX n=2 Tax=Photorhabdus RepID=Q7N5B4_PHOLL Length = 410 Score = 217 bits (554), Expect = 7e-55, Method: Composition-based stats. Identities = 91/334 (27%), Positives = 145/334 (43%), Gaps = 11/334 (3%) Query: 232 SVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENW 291 + + L + L+ L Q L ++ + I + ++ + Sbjct: 75 RYKAEINALKQKNSYLDFLCQSHFKLQNCKLLPEKLQEIFSHLNRLIPFCEAKIIFYPSQ 134 Query: 292 RISEGQPNPELPMQILPVTMQETV------YGEL----HWQNSHVSSSEPLLNSVSSMLG 341 + + + P +P+ M+ + YG L H + + L+ V +++ Sbjct: 135 QEYFFRNPHQCPYFDMPLIMRWNLDDNIDSYGTLWIKTHRNSDLTPDEKSLVQDVVTLMT 194 Query: 342 RGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSI 401 L + Q +L ER I+RELHDS+AQ LS+L+IQ+ L + + Sbjct: 195 NKLLRENQIQCQHQSMLAAERTAISRELHDSIAQSLSFLKIQVNCLYIGSDNLPKQSLTS 254 Query: 402 MADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLA 461 + LN AYRQLRELL TFR Q +L +L+ ++ ++ + + RL Sbjct: 255 LNMIKDELNIAYRQLRELLATFRNEQPQCNLQESLQTLISEFNHRLGFNIEFNYRLTHQH 314 Query: 462 LDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEG 521 + HL+QIIRE + N KHANA+ I++ D TV + DNG GI + Sbjct: 315 IPDSYSKHLIQIIRECLNNCYKHANANWISIRIYPIDDKIITV-VSDNGQGINLDSANKN 373 Query: 522 HYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 +GL IM++R LGG L GGT V I F Sbjct: 374 KFGLAIMQDRVSILGGQLQIKNRKHGGTEVEIQF 407 >UniRef50_B1ZR83 Integral membrane sensor signal transduction histidine kinase n=2 Tax=Verrucomicrobia RepID=B1ZR83_OPITP Length = 742 Score = 217 bits (553), Expect = 9e-55, Method: Composition-based stats. Identities = 62/220 (28%), Positives = 101/220 (45%), Gaps = 5/220 (2%) Query: 347 NQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFS 406 + + Q ++ ER +AR+LHD+L Q L+ + +QL + D +Q + Sbjct: 510 ARKTEEVQFRAVLAERTRLARDLHDTLEQTLTGIALQLDTAAKLFGRDGEQSQHHLQLAR 569 Query: 407 QALNDAYRQLRELLTTFR-LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQ 465 L+ + LR + R L+Q DL ALR+ + L + TS + L Sbjct: 570 NWLHQSQVDLRRSIWDLRSRELEQFDLAKALRQSAEQLVDGTSLTIDFRTTGDRRPLPEV 629 Query: 466 MQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEP---EGH 522 ++ ++L+I +EA N KHA A + + +P + I D+G+G P P E H Sbjct: 630 VEENVLRIGQEAFTNIAKHARARRVLATLTFSP-STLRLRIEDDGVGFNVPAAPSAAESH 688 Query: 523 YGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEE 562 +GL M ERA+RLGG + G GT +++ E Sbjct: 689 FGLLGMTERAKRLGGHIKVDSAPGQGTSLTLEVPLEPLSE 728 >UniRef50_Q3SJC2 Multi-sensor Signal Transduction Histidine Kinase n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SJC2_THIDA Length = 1168 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 54/245 (22%), Positives = 112/245 (45%), Gaps = 5/245 (2%) Query: 317 GELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQV 376 G + W ++ ++ LN + L + + ++ + +ER IARE+HD L Q+ Sbjct: 922 GGVVWDGIILNVTQTKLNELE--LRQSRESLRLLTAHREAVREDERKHIAREIHDELGQL 979 Query: 377 LSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSAL 436 L+ LR++++ + + DN + +N + +R++ T+ R L +A+ Sbjct: 980 LTALRMEVSAVGMAFGRDNPELDEKVRSMKTVINQTIQTVRQVATSLRPAALDLGLETAI 1039 Query: 437 REMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVT 496 + + + + + +ALD L +I++E + N +HA A+ +++ T Sbjct: 1040 DWLASEFCKRNAVECAVAIPGE-IALDEVRATALFRILQETLTNIARHAGATSVSIKLKT 1098 Query: 497 APDGNHTVYIRDNGIGIGEPKEPEGH-YGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 + + + DNG G + +G +GL + ER LGGT+T G G +++ Sbjct: 1099 TGE-EICLKVTDNGRGFDPEEAKQGGSFGLKGIAERVLILGGTMTIKSAPGQGAELAVCI 1157 Query: 556 RSAEG 560 +A+ Sbjct: 1158 PAADP 1162 >UniRef50_B0C7C8 GAF domain protein n=1 Tax=Acaryochloris marina MBIC11017 RepID=B0C7C8_ACAM1 Length = 1980 Score = 217 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 57/276 (20%), Positives = 116/276 (42%), Gaps = 11/276 (3%) Query: 290 NWRISEGQPNPELPMQILPVTMQETVYGELHW----QNSHVSSSEPLLNSVSSMLGRGLY 345 W S G + + G + + Q + + ++++ ++ Sbjct: 1695 EWHTSRGHQSATCACM----KIGNQPIGFIGFAFCDQTVLSTEQLEFVQALTNQATLAIH 1750 Query: 346 FNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADF 405 + + + L +ER +ARE+HD+LAQ + + +QL K + + TA+S + Sbjct: 1751 LTRLAEQARTNALTDERNRLAREIHDTLAQAFTGISLQLEAAKNILSQQPETAKSYLDQA 1810 Query: 406 SQALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDA 464 + + R + R L++ L AL++ L + TS + + + L+ Sbjct: 1811 RDLTHQGLSEARRSVHALRSEALERETLVKALQKNLTQMTLNTSLQTEFQIQGTPILLEE 1870 Query: 465 QMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPE-GHY 523 +Q++LL+I +EA+ N ++HA A + V+ D + + D+G+G + + Sbjct: 1871 GLQLNLLRIGQEAITNVLRHAQAKTLTVTLAFT-DQEVGLCVTDDGVGFEPQDVADITGF 1929 Query: 524 GLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAE 559 GL +RER R G + + G GT + + Sbjct: 1930 GLVGIRERTVRYQGQVKITSHPGEGTTIEVKMPVQP 1965 >UniRef50_A9B1S5 Multi-sensor signal transduction histidine kinase n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B1S5_HERA2 Length = 665 Score = 217 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 68/264 (25%), Positives = 117/264 (44%), Gaps = 10/264 (3%) Query: 300 PELPMQILPVTMQETVYGELHWQ-----NSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQ 354 P + LP++++E V G + L +++ + + + Sbjct: 402 PYQTLLALPLSIKEQVLGVVLVATPDRDAPFGPQQLVLAEGLATSAAIAIEQARLYDQAR 461 Query: 355 QLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYR 414 + EER+ +ARELHDS+ Q L + + + + + A + + A + + Sbjct: 462 RAAQAEERSRLARELHDSVTQTLFSMTLTAEAARAQVERNPVRAATQIDRLKAAAHQSLG 521 Query: 415 QLRELLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQI 473 ++RELL R T LQ+ + +LR+ + +L Q + L+C L L +I Sbjct: 522 EMRELLLQLRPTPLQEHGIIKSLRDHIASLNAQ-EVAINLECEGEDSVLSPANAAGLYRI 580 Query: 474 IREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEP--KEPEGHYGLNIMRER 531 +EA+ NA++HA A+ + VS A T+ ++DNG G + H GL M ER Sbjct: 581 AQEAIANALRHAQATNVRVSFSFASKST-TLMVKDNGCGFDPDLLERSGRHLGLTSMAER 639 Query: 532 AERLGGTLTFSQPSGGGTLVSISF 555 A LGGTL G GT +++ Sbjct: 640 AGELGGTLDVQSVVGEGTCLTVHL 663 >UniRef50_D1CE67 Multi-sensor signal transduction histidine kinase n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CE67_THET1 Length = 748 Score = 217 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 57/210 (27%), Positives = 87/210 (41%), Gaps = 7/210 (3%) Query: 356 LLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQ 415 EER IAR+LHD AQ L L ++ L+ + + AQ + D + Sbjct: 537 AAQEEERRRIARDLHDDTAQALIALSRRIDSLREDLGDLPEAAQRKIEDLKALTDQTLAS 596 Query: 416 LRELLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQII 474 +R R + L L AL ++ + L + L ++++ L +I Sbjct: 597 VRRFSRDLRPSILDDLGLVPALEWLVSENAKRYKITTRLKIQGEERRLQPEVELALFRIA 656 Query: 475 REAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPK-----EPEGHYGLNIMR 529 +EA+ N KH+ A+ AV T D + + DNGIG P G G+ M Sbjct: 657 QEALNNTAKHSQATGAAVEL-TFGDTWCRLTVSDNGIGFQTPPNISELADRGRMGVMGMY 715 Query: 530 ERAERLGGTLTFSQPSGGGTLVSISFRSAE 559 ERA LGG L G GT ++++ E Sbjct: 716 ERANLLGGNLYVRTAPGQGTRITVTVPLIE 745 >UniRef50_B9XNW0 Multi-sensor signal transduction histidine kinase n=1 Tax=bacterium Ellin514 RepID=B9XNW0_9BACT Length = 1382 Score = 217 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 57/259 (22%), Positives = 111/259 (42%), Gaps = 8/259 (3%) Query: 307 LPVTMQETVYGELHWQ----NSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEER 362 +P+ + V G + + S L +++ + + + ++ +M ER Sbjct: 1123 VPMLIAGHVEGIVSIRFTRKRSFRREEIELPQALAHQAMLAIQLMRLSQQSREAAVMAER 1182 Query: 363 ATIARELHDSLAQVLSYLRIQLTLLKRSIPEDN-ATAQSIMADFSQALNDAYRQLRELLT 421 +AR++HD+LAQ + + +QL + + + ++ R+ R + Sbjct: 1183 NRMARDIHDTLAQGFTGVIVQLEAAADAGSQGLVVEVAEHLNRAGDLARESLREARRSVR 1242 Query: 422 TFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLN 480 R L+ +L AL ++ + T+ + D + + ++ + +LL+I +E N Sbjct: 1243 ALRPLALEGKNLFKALEGLIQKMTAGTTMRAKFDLQGEPCVIPSEWEDNLLRIGQEVFTN 1302 Query: 481 AMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLT 540 A++HA ASE V + + ++DNG G P +GL +RER E + G L+ Sbjct: 1303 ALRHARASEFKARLVFSAQA-LQLELQDNGQGFD-PARQHDGFGLLGIRERVESMRGQLS 1360 Query: 541 FSQPSGGGTLVSISFRSAE 559 +G GT V I E Sbjct: 1361 IQSTNGEGTAVLIILPLTE 1379 >UniRef50_B5I2X6 Two-component system sensor kinase n=10 Tax=Streptomyces RepID=B5I2X6_9ACTO Length = 381 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 70/305 (22%), Positives = 123/305 (40%), Gaps = 18/305 (5%) Query: 267 FRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETVYGELHWQN--- 323 +L A+ + E W + LP+ + V G L N Sbjct: 82 LAAMLHEATPERLADVRKDPRFEGWP---SAHPDLVDFLGLPIRDGDEVIGALFLANKNC 138 Query: 324 -------SHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQV 376 E LL+ ++ L + + ++L + EER+ +A ELHD+++Q Sbjct: 139 PKPEGSCGFTEEDEELLSILAQHAAIALTNARLYERSRELTIAEERSRLAHELHDAVSQK 198 Query: 377 LSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSA 435 L LR+ + D + A+ + + +A +LR + R L + L + Sbjct: 199 LFSLRLTAQAAAALVDRDPSRAKGELHQVAVLAAEAADELRAAVVELRPAALDEDGLTAT 258 Query: 436 LREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCV 495 LR + L +A++T R AL A + +L++ +EA+ NA++H+ A + V+ Sbjct: 259 LRTQIHVLDRAHTARVTFAAR-NFRALPAAQEEAMLRVAQEALHNALRHSGAEHVDVTLD 317 Query: 496 TAPDGNHTVYIRDNGIGIGEP--KEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSI 553 G + + D+G G + H GL MR+R +GGTLT G GT + + Sbjct: 318 RRGSGAV-LRVTDDGCGFEPKAIRRAGRHLGLVSMRDRTSGVGGTLTVESAPGKGTTIEM 376 Query: 554 SFRSA 558 Sbjct: 377 EVPGG 381 >UniRef50_C6P6J2 PAS/PAC sensor signal transduction histidine kinase n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P6J2_9PROT Length = 355 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 62/277 (22%), Positives = 115/277 (41%), Gaps = 8/277 (2%) Query: 290 NWRISEGQPNPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQA 349 +W N E+ +L T Q G++ W+ V+ ++ L+ + +L + Sbjct: 67 SWEGRVTLANGEMKWLVLGSTPQSGENGKIEWEGLAVNVTKAKLDEI-ELLRSQQQLREF 125 Query: 350 QKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQAL 409 H Q +ER IARE+HD + +L+ +++ L +K +P+ + + Sbjct: 126 SSHIQD-AKEQERLRIAREVHDEIGGLLTAIKMDLAWIKERLPKSKKILTDKTSAIENMV 184 Query: 410 NDAYRQLRELLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLTLDCR---LPTLALDAQ 465 A R L + R L + +A+ + +T K L L L Sbjct: 185 GKAMTAARNLAHSLRPGYLDSFGIVAAIEMEASEFEQRTGIKCLLAHNEEEDEELELHPD 244 Query: 466 MQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIG-EPKEPEGHYG 524 + + L +I +EA+ N MKH+ A+++ V + + + I DNG G + + +G Sbjct: 245 VSIALFRIFQEALTNIMKHSRANKVEV-LIHNSQEHIELTISDNGCGFSQDARSKPRSFG 303 Query: 525 LNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGE 561 L ++ER GG ++ S GT V + G+ Sbjct: 304 LRGIQERVAHFGGEVSISSTPEQGTRVYVKIPHFSGD 340 >UniRef50_B4CYV7 Histidine kinase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CYV7_9BACT Length = 694 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 72/245 (29%), Positives = 115/245 (46%), Gaps = 8/245 (3%) Query: 318 ELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQ--AQKHFQQLLLMEERATIARELHDSLAQ 375 L W VS + + LGR + ++ Q+ +EERA +ARE HD+L Q Sbjct: 443 RLLWSLGGVSLATLAGWIWVAALGRRVRRQTEVIRQKIQREGALEERARLAREFHDTLEQ 502 Query: 376 VLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLT-LQQADLPS 434 + +R+QL +K E A A+ + + ++ + R + R L+Q DL + Sbjct: 503 QFTGIRLQLEAVKSKFGEAPAEAEEYLDVARSLMRHSHDEARRTVWDLRADVLEQHDLST 562 Query: 435 ALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSC 494 AL + + N T + + L M+ HLL+I +EAV NA+KHA ASE+ + Sbjct: 563 ALEKTVAGATNGTP-RARVAVSGQPRRLPGWMENHLLRIGQEAVTNAIKHARASEVHIEL 621 Query: 495 VTAPDGNHTVYIRDNGIGI---GEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLV 551 PD + +RD+G G GH+GL M+ERAE++ G L GT++ Sbjct: 622 DYRPD-VLQLRVRDDGCGFDANDTSASDRGHFGLLGMKERAEKIRGRLQVLSTLAAGTMI 680 Query: 552 SISFR 556 ++ Sbjct: 681 EVTVP 685 >UniRef50_C6J152 Histidine kinase dimerization and phosphoacceptor region n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J152_9BACL Length = 360 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 70/255 (27%), Positives = 122/255 (47%), Gaps = 5/255 (1%) Query: 310 TMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIAREL 369 + E G L Q + + VSS+ + Q + + ++EER +AREL Sbjct: 98 KLGEDELGRLAEQLERIG--KRWEEQVSSLQRLSTHNAQLAEQARVSAIVEERQRLAREL 155 Query: 370 HDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLT-LQ 428 HD+++Q L + + T + R++ +D AQ + + + A ++R LL R L+ Sbjct: 156 HDAVSQQLFAISMTATAVGRTLEKDFDKAQRQVELIEEMASVAQSEMRALLLHLRPVYLE 215 Query: 429 QADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANAS 488 +L L +++ L+ + LTL+ L L ++ HL +II+EA+ N ++HA A Sbjct: 216 GKELSQGLSDLVKELKTKVPMDLTLEID-EDLNLGKGIENHLFRIIQEAMSNTLRHAKAD 274 Query: 489 EIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGG 548 ++ + + V +RDNGIG + + YGL+ M+ER +GG++ F G G Sbjct: 275 KMEIRIHHRGEA-VKVTLRDNGIGFELDDKKQASYGLSTMQERIHEIGGSIQFITAPGKG 333 Query: 549 TLVSISFRSAEGEES 563 T + IS E Sbjct: 334 TRIEISVPLIHEESG 348 >UniRef50_B0K3K4 Histidine kinase n=11 Tax=Thermoanaerobacterales RepID=B0K3K4_THEPX Length = 388 Score = 215 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 58/249 (23%), Positives = 109/249 (43%), Gaps = 11/249 (4%) Query: 319 LHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLS 378 L++ N + L + + +AQ+ EER IARE+HD AQ ++ Sbjct: 148 LNYLNRDLKKMNTQLEQLKDKRALSVKIIEAQE--------EERKRIAREIHDGPAQAMA 199 Query: 379 YLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLT-LQQADLPSALR 437 + + L ++ I +D A+ + + + + +++R+++ R + L L AL Sbjct: 200 NVLSKSELCEKLITKDIEQAKIELKNLKNIVQQSLKEVRKIIYDLRPSALDDLGLIPALS 259 Query: 438 EMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTA 497 + +T + L ++++ ++++EA+ N KH+ A +V Sbjct: 260 RYIKNFSEETGIFVDFSVLSDYKRLSPEIEITCFRVVQEALTNIKKHSKAKNASVKFEFG 319 Query: 498 PDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRS 557 ++ I+D+GIG + +G YGL MRER E L G S GT + IS Sbjct: 320 M-RFISIIIKDDGIGFDKENIGQG-YGLMGMRERIEILNGKFEISSFKNNGTQIYISIPV 377 Query: 558 AEGEESQLM 566 E+ Q++ Sbjct: 378 RGVEDDQIV 386 >UniRef50_UPI00017449FC GAF domain protein n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017449FC Length = 690 Score = 215 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 66/214 (30%), Positives = 101/214 (47%), Gaps = 3/214 (1%) Query: 352 HFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALND 411 ++ + +ER IARELHD++ Q L+ L IQL ++ I A + Q L Sbjct: 471 QIERSAVKDERERIARELHDTIEQELAGLSIQLRNARQRIATAPEQASRSLGLAEQMLRH 530 Query: 412 AYRQLRELLTTFR-LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHL 470 + R + R L+ L AL EML L + A +L+ + L ++HL Sbjct: 531 CREEARTSIRDLRSTALELRGLHGALEEMLTPLATEAGAHFSLEVKGEPYHLAGPSEIHL 590 Query: 471 LQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIG-EPKEPEGHYGLNIMR 529 L+I EAV NA +HA+ I V+ P+ ++ I D+G G + P GH+G+ +R Sbjct: 591 LRIAHEAVANAARHASPRLIQVTIEFTPE-TVSLEIEDDGCGFDTDAPAPRGHFGMLGIR 649 Query: 530 ERAERLGGTLTFSQPSGGGTLVSISFRSAEGEES 563 ER +L GTL G GT + + S + S Sbjct: 650 ERVNKLQGTLQTHSEPGKGTRIHVVVPSEVAKRS 683 >UniRef50_Q81FX4 Two-component sensor protein yvqE n=44 Tax=Bacillus cereus group RepID=Q81FX4_BACCR Length = 351 Score = 215 bits (548), Expect = 3e-54, Method: Composition-based stats. Identities = 57/230 (24%), Positives = 103/230 (44%), Gaps = 8/230 (3%) Query: 332 LLNSVSSMLG--RGLYFNQAQ--KHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLL 387 L + G + + +A + +Q + +ER +ARELHDS++Q L + + ++ + Sbjct: 116 LARRLEEQAGLFQKVTNERAHWNEEMRQEAISQERHRLARELHDSVSQQLFAMSMMMSAI 175 Query: 388 KRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLT-LQQADLPSALREMLDTLQNQ 446 I E + + + +A ++R LL R L+ L + E+L L + Sbjct: 176 NEQITEFPDVTKKQLQLVENMVVNAQSEMRALLLHLRPVQLEGKKLTEGIEELLTELSRK 235 Query: 447 TSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYI 506 K+ + + + L ++ HL +I++EA+ N ++HA A + V D + I Sbjct: 236 QHMKI--EWLIEPIELKKGVEDHLFRIVQEALSNTLRHAKAKKTEVRL-RKIDQYAILKI 292 Query: 507 RDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFR 556 D+G+G G YGL M+ER +GGTL GT + + Sbjct: 293 IDDGVGFEVGVNKAGSYGLRSMQERVHEIGGTLKVLSFPAKGTQIEVKVP 342 >UniRef50_A9B046 Integral membrane sensor signal transduction histidine kinase n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B046_HERA2 Length = 546 Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats. Identities = 74/331 (22%), Positives = 134/331 (40%), Gaps = 15/331 (4%) Query: 242 EAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELN----------VGENW 291 +A + + LY S+ L+ +Q+ V ++ I + L Sbjct: 210 QANQVIGALYVRSRPLSQNQVIVALLMFVIFIASSIVSIIANALIGMVYGWFVARNFVRR 269 Query: 292 RISEGQPNPELPMQILPVTMQETVYGEL-HWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQ 350 + Q L L V + + E+ H S ++ L ++V + Sbjct: 270 LVHLTQATDSLAAGDLSVRVNDGSIDEIGHLARRFDSMAQQLESNVKMLRQLADRNAALV 329 Query: 351 KHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALN 410 + QL ++EER +AR+LHDS++Q L + + + +P A+S + SQ Sbjct: 330 EQAGQLAIVEERNRLARDLHDSVSQELFSVTMLAAAARNLLPAQPDKARSQVEQLSQMAQ 389 Query: 411 DAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVH 469 A + R L+ R L L ALR++ + + ++ L+ + + Sbjct: 390 RALHETRGLIFALRPAALGDQGLVPALRQLTEEAARRQGLQIELNTNGE-RRIPLDHEQA 448 Query: 470 LLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGH-YGLNIM 528 L +I +EA+ N KH+ + +VS T+ +RD G G + K H GL + Sbjct: 449 LYRICQEALANVTKHSGVNSASVSLEYEAHRT-TLEVRDRGRGFDQDKPRNSHSLGLISI 507 Query: 529 RERAERLGGTLTFSQPSGGGTLVSISFRSAE 559 +ERA+ +GGT+ + G GT + I + Sbjct: 508 QERAKAVGGTVELTAAPGQGTSLRIVVPRTQ 538 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 56/155 (36%), Gaps = 11/155 (7%) Query: 151 VAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGL 210 +A S+ I + + V L L A+ + G ++ +E+G Sbjct: 241 IASSIVSIIANALIGMVYGWFVARNFVRRLVHLTQATDSLAAGDLSVR-VNDGSIDEIGH 299 Query: 211 LAKTFNQMSSELH---KLYRSLEASVEE------KTRDLHEAKRRLEVLYQ-CSQALNTS 260 LA+ F+ M+ +L K+ R L + + E R L+ SQ L + Sbjct: 300 LARRFDSMAQQLESNVKMLRQLADRNAALVEQAGQLAIVEERNRLARDLHDSVSQELFSV 359 Query: 261 QIDVHCFRHILQIVRDNEAAEYLELNVGENWRISE 295 + R++L D ++ +L+ + E Sbjct: 360 TMLAAAARNLLPAQPDKARSQVEQLSQMAQRALHE 394 >UniRef50_Q2B2D2 Two-component sensor histidine kinase n=2 Tax=Bacillus RepID=Q2B2D2_9BACI Length = 345 Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats. Identities = 60/259 (23%), Positives = 113/259 (43%), Gaps = 13/259 (5%) Query: 313 ETVYGELH-WQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQ--------QLLLMEERA 363 + G + ++N + L+ ++ + ++ Q + +MEER Sbjct: 90 GKLAGRISSYENDEIGLIAEELDGLADYIQEQVHSVQRLAEERSSLAQSAHAAAVMEERQ 149 Query: 364 TIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTF 423 +AR+LHD ++Q L L + + + D+ A+ + + S A ++R LL Sbjct: 150 RLARDLHDVVSQQLFALSMMSSAALKVFDRDSEKAKKQLKEISGIAAKAQGEMRALLLHL 209 Query: 424 RL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAM 482 R L L + +++ L+ +T + + + L + HL ++++EA+ N + Sbjct: 210 RPIQLSDDTLCDGIIKLIHELRGKT--TIDFQASIDEIELSKAAEEHLFRVVQEALSNIL 267 Query: 483 KHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFS 542 +HA+AS+I ++ D + ++I D+G G E YGL MRER E +GG Sbjct: 268 RHADASKIKLTLTEKEDYTY-LFIGDDGKGFDPHIERVASYGLKTMRERCEEIGGIFNIR 326 Query: 543 QPSGGGTLVSISFRSAEGE 561 G GT + I E Sbjct: 327 SKQGEGTYIEIRIPLKGRE 345 >UniRef50_A7NRQ7 Integral membrane sensor signal transduction histidine kinase n=1 Tax=Roseiflexus castenholzii DSM 13941 RepID=A7NRQ7_ROSCS Length = 682 Score = 215 bits (547), Expect = 4e-54, Method: Composition-based stats. Identities = 67/253 (26%), Positives = 117/253 (46%), Gaps = 7/253 (2%) Query: 307 LPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIA 366 +PVT + GEL + ++ LN + L + Q ++ ++ +EER +A Sbjct: 436 VPVTSNDE-LGELAASFNQMTDE---LNRRTRELAQTSAELQLKETQVKMAALEERQRLA 491 Query: 367 RELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRL- 425 RELHDS++Q L + + + + D A + ++R L+ R Sbjct: 492 RELHDSVSQALYGIALGARTAQTQLERDPARLGEPLEYILSLAEAGLSEMRALIFELRPE 551 Query: 426 TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHA 485 +LQ L +AL + D L+ + + P + + + L +I +EA+ N +HA Sbjct: 552 SLQTEGLVAALTKQSDALRARHKLDVVTRFD-PEPEISLEAKEALYRIAQEAMHNVARHA 610 Query: 486 NASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPS 545 +A+ + +S + A DG T+ IRDNG G + GH GL M ERA +GG Sbjct: 611 HATRVELSLLNA-DGALTLEIRDNGKGFDPAQPYPGHLGLKSMPERAAHIGGAFHIESRP 669 Query: 546 GGGTLVSISFRSA 558 G GT+++++ + Sbjct: 670 GAGTVITVTVPNG 682 Score = 65.3 bits (158), Expect = 6e-09, Method: Composition-based stats. Identities = 36/148 (24%), Positives = 58/148 (39%), Gaps = 12/148 (8%) Query: 147 MLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPN 206 + V L + TL + + P+ +++ + I G D + + Sbjct: 384 IATVRNTLLIMALFFIGAAAVTLWLSQRFLARPMTDMLSGVRAITAGNLD-VSVPVTSND 442 Query: 207 ELGLLAKTFNQMSSELHKLYRSLEASVEE--------KTRDLHEAKRRLEVLYQ-CSQAL 257 ELG LA +FNQM+ EL++ R L + E K L E +R L+ SQAL Sbjct: 443 ELGELAASFNQMTDELNRRTRELAQTSAELQLKETQVKMAALEERQRLARELHDSVSQAL 502 Query: 258 NTSQIDVHCFRHILQI--VRDNEAAEYL 283 + + L+ R E EY+ Sbjct: 503 YGIALGARTAQTQLERDPARLGEPLEYI 530 >UniRef50_A5FQK5 Multi-sensor signal transduction histidine kinase n=5 Tax=Dehalococcoides RepID=A5FQK5_DEHSB Length = 1229 Score = 215 bits (547), Expect = 5e-54, Method: Composition-based stats. Identities = 59/216 (27%), Positives = 95/216 (43%), Gaps = 8/216 (3%) Query: 348 QAQKHFQQL--LLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADF 405 + Q+L L EERATIARELHD + Q L+ L++ L K S+P+ ++ ++A+ Sbjct: 1008 ELHTLSQRLVELQEEERATIARELHDQVGQSLTVLKLMLDKAKDSLPD---RSEKLLAEA 1064 Query: 406 SQALNDAYRQLRELLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDA 464 +++ +R + R L L AL D +QT + Sbjct: 1065 QPLVSELISSVRNMSLDLRPRMLDDLGLLPALLWYFDRFSSQTGINVNFQHAGLKRKFSP 1124 Query: 465 QMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEG-HY 523 Q+ + +II+EA+ N +++A + V A + I+D+G G + G Sbjct: 1125 QLGTAVYRIIQEALTNVVRYAGVDHVLVR-ARADKNQLALVIQDSGKGFNPAQRATGMSS 1183 Query: 524 GLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAE 559 GL M+ER LGG L G GT + + E Sbjct: 1184 GLKGMKERVRFLGGKLDIESKPGEGTHIIVELPLNE 1219 >UniRef50_B8D0J3 Histidine kinase n=2 Tax=Clostridia RepID=B8D0J3_HALOH Length = 391 Score = 215 bits (547), Expect = 5e-54, Method: Composition-based stats. Identities = 55/216 (25%), Positives = 102/216 (47%), Gaps = 8/216 (3%) Query: 351 KHFQQLLL------MEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMAD 404 + QQL + +ER +ARE+HD AQ ++ L ++ L ++ + +D A++ + D Sbjct: 164 RQKQQLAIKIIQAQEDERKRVAREIHDGPAQSIANLVFRVELAQKLMDKDLKKARNELED 223 Query: 405 FSQALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALD 463 + + + +++R+++ R +L L LR ++ QT + + P L Sbjct: 224 VKELVRLSMQEVRKIIYDLRPMSLDDLGLIPTLRRYINKFNEQTKIIIDFNILGPKRRLP 283 Query: 464 AQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHY 523 ++ + ++I+E + N KH+ AS V+ P+ + I D+GIG + + Sbjct: 284 NTYEITIFRLIQEGLNNIYKHSKASTGTVTLEYTPE-QINILISDDGIGFKPEEVGANKF 342 Query: 524 GLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAE 559 GL MRER E LGG L GT + I+ + Sbjct: 343 GLVSMRERCELLGGKLDLFSEKNKGTKIKITLPIKQ 378 >UniRef50_Q1D524 Sensor histidine kinase n=2 Tax=Cystobacterineae RepID=Q1D524_MYXXD Length = 427 Score = 214 bits (545), Expect = 7e-54, Method: Composition-based stats. Identities = 61/208 (29%), Positives = 99/208 (47%), Gaps = 6/208 (2%) Query: 349 AQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQA 408 Q ++L ++EER +ARE+HD L LS + IQ + E+ + + + Sbjct: 222 LQGDLKELAVVEERNRMAREIHDGLGASLSSMIIQSEYILNLAREEG--LREEIRELKLT 279 Query: 409 LNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQV 468 ++ +LR L R + +L L + T + +T + + LD +Q+ Sbjct: 280 AEESIEELRRSLRMMR---EDFELAQGLEDYAKTFRERTGLDIRFERTGLQRKLDPDVQL 336 Query: 469 HLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIM 528 L +I++E++ NA+KHA A + V + D + +RD+G G + P GHYGL M Sbjct: 337 ALFRILQESLSNAVKHAEAKGVQVRLDFSED-RVNLVVRDDGKGFDPSRTPRGHYGLLNM 395 Query: 529 RERAERLGGTLTFSQPSGGGTLVSISFR 556 RERA +LGG L G G V+ S Sbjct: 396 RERAMKLGGQLIVDSSPGAGAQVAFSLP 423 >UniRef50_A5GBT2 Integral membrane sensor signal transduction histidine kinase n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5GBT2_GEOUR Length = 610 Score = 214 bits (545), Expect = 7e-54, Method: Composition-based stats. Identities = 58/238 (24%), Positives = 103/238 (43%), Gaps = 14/238 (5%) Query: 332 LLNSVSSMLGRGLYFNQAQKHFQQL-----------LLMEERATIARELHDSLAQVLSYL 380 LL + + R L ++ ++ +L + EER IAR++HD +AQ L+ + Sbjct: 360 LLVLMCVLFYRVLALDREEREAARLSLEKSRRAEETAIDEERRRIARDIHDGVAQDLAMM 419 Query: 381 RIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLT-LQQADLPSALREM 439 ++ ++ + + + + F + L+ ++R + R L + A+ Sbjct: 420 NMRASVWEHLVHSNREKMTEEIKLFRKLLHKNIGEVRRAIFAMRPVELDELGFSEAVGRY 479 Query: 440 LDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPD 499 + T ++ L+ +A+ Q+++ L +II+E++ N KHA A+E V Sbjct: 480 VKEFGQYTGLRIDLEMAGD-IAMPRQLELELYRIIQESLNNIAKHAGATEAGVRISDDVA 538 Query: 500 GNHTVYIRDNGIGIGEPK-EPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFR 556 G TV I DNG G GL M+ER ER GT G G ++I F Sbjct: 539 GCLTVSIADNGKGFDLSALAQSPRLGLRQMKERVERRNGTFLIDSGPGRGAAITICFP 596 >UniRef50_C1YIX9 Signal transduction histidine kinase, COG4585 n=1 Tax=Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 RepID=C1YIX9_NOCDA Length = 412 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 65/255 (25%), Positives = 113/255 (44%), Gaps = 10/255 (3%) Query: 309 VTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFN-----QAQKHFQQLLLMEERA 363 +T+Q G S + + L L N Q ++ +++ER Sbjct: 156 ITIQTVAVGGGLVIASKAAEQHRERRVTVARLEAALEENAGLHAQLLTQAREAGVLDERQ 215 Query: 364 TIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTF 423 +ARE+HD+LAQ L+ + Q+ +R ED A+ ++ + R + Sbjct: 216 RMAREIHDTLAQGLAGIVTQIQAAQRVW-EDPGAARPHADRALGLARESLAEARRSVQAL 274 Query: 424 RL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAM 482 R L ++ LP AL E+ + + LD +AL ++V L ++ +EA+ N Sbjct: 275 RPGQLAESQLPEALGELTRRWAEEHGVRPDLDVTGERVALSPAIEVVLFRVAQEALTNVA 334 Query: 483 KHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFS 542 +HA+AS + V+ + D + +RD+G GI + +GL+ MR+R +GG L Sbjct: 335 RHADASRVGVTLSYSDD-VVLLDVRDDGRGI--TGHNQHGFGLSSMRQRVRGIGGALEIE 391 Query: 543 QPSGGGTLVSISFRS 557 G GT VS + + Sbjct: 392 SGEGEGTAVSATVPA 406 >UniRef50_C8WYI2 Histidine kinase n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WYI2_ALIAD Length = 223 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 55/206 (26%), Positives = 97/206 (47%), Gaps = 4/206 (1%) Query: 358 LMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLR 417 L EER IAR+LHD Q L+ + ++L +LK + + A+ + + + +A +++R Sbjct: 19 LEEERRRIARDLHDGPVQALTNISMKLEVLKHMLDSNPQIAKDQVDQLHRRVTEAVKEIR 78 Query: 418 ELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCR--LPTLALDAQMQVHLLQII 474 L+ R + + L A + + + + + + + + QV L ++I Sbjct: 79 ALIYDLRPLAVDEVGLIEATKALCSQFEKNWGISTSFVVQDGVTSAEITPAKQVALYRLI 138 Query: 475 REAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAER 534 +E + N KHA A+ V + + + + ++D+G+G P GHYGL M+ERAE Sbjct: 139 QEILNNIKKHARATTTVVEFLR-DESDLIITVKDDGVGFDTNYVPPGHYGLIGMKERAEF 197 Query: 535 LGGTLTFSQPSGGGTLVSISFRSAEG 560 LGG L G G+ I G Sbjct: 198 LGGRLEIHSIIGQGSTFIIRIPMYTG 223 >UniRef50_C9NJB7 GAF sensor signal transduction histidine kinase n=7 Tax=Streptomyces RepID=C9NJB7_9ACTO Length = 381 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 69/280 (24%), Positives = 115/280 (41%), Gaps = 18/280 (6%) Query: 295 EGQPNPELPMQ---ILPVTMQETVYGELHWQN----------SHVSSSEPLLNSVSSMLG 341 EG P+ M LP+ + G L N E LL ++ Sbjct: 104 EGWPDAHPDMSDFLGLPIQDGDETIGALFLANKRCPRPTGGCGFTEEDEELLEILAQHAA 163 Query: 342 RGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSI 401 L + + ++L + EER+ +A ELHD+++Q L LR+ + D A+ Sbjct: 164 IALTNARLYERSRELTIAEERSRLAHELHDAVSQKLFSLRLTAQAAAALVDRDPVRAKGE 223 Query: 402 MADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTL 460 + + +A +LR + R L + L + LR + L SA++T Sbjct: 224 LQQVATLAGEAVDELRAAVVELRPAALDEDGLVATLRTQVQVLDRAHSARVTFTSAG-VR 282 Query: 461 ALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEP--KE 518 AL A + +L++ +EA+ NA++H+ A ++ VS + + I D+G G + Sbjct: 283 ALPAAQEEAMLRVAQEALHNALRHSGAGQVDVSLARST-TTAVLRITDDGCGFDPDVVRR 341 Query: 519 PEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSA 558 H GL MR RA +GG L G GT + + Sbjct: 342 AGRHLGLVSMRHRAGGVGGRLVVDSEPGTGTTIQMEVPCG 381 >UniRef50_C9RWH5 Integral membrane sensor signal transduction histidine kinase n=13 Tax=Bacillaceae RepID=C9RWH5_GEOSY Length = 344 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 62/266 (23%), Positives = 119/266 (44%), Gaps = 14/266 (5%) Query: 310 TMQETVYGELHWQNSHVSSSE----------PLLNSVSSMLGRGLYFNQAQKHFQQLLLM 359 +++ GELH + E L + + ++ + +L Sbjct: 81 HIEQGEMGELHREEPPPELQELWRQIVKLQTQWLEQTKRVQKLAAEKAEQEERLVERILS 140 Query: 360 EERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLREL 419 EER +ARELHDS++Q L + ++ + ++P D+ + + Q ++ + ++R L Sbjct: 141 EERTRLARELHDSVSQQLFAASMMMSAVMETMPPDDERHRKQLKMVEQMIHQSQLEMRAL 200 Query: 420 LTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAV 478 L R L+ L + E+L L + L + ++ ++LD ++ HL +I++E++ Sbjct: 201 LLHLRPVHLKGKSLQEGMNELLTELAGK--VPLEMKWKIEDISLDKGVEDHLFRILQESL 258 Query: 479 LNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGT 538 N ++HA A + V + DG + + D+G+G + G YGL M ERA +GG Sbjct: 259 SNTLRHAKAKSLEV-LLIERDGFAILRVTDDGVGFDVERSKSGSYGLQHMYERAAEIGGM 317 Query: 539 LTFSQPSGGGTLVSISFRSAEGEESQ 564 L G GT + + + + Sbjct: 318 LKIVSLKGQGTRLEVKVPLLHRGDDR 343 >UniRef50_C8NE28 Sensor histidine kinase n=1 Tax=Granulicatella adiacens ATCC 49175 RepID=C8NE28_9LACT Length = 355 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 56/210 (26%), Positives = 98/210 (46%), Gaps = 4/210 (1%) Query: 351 KHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALN 410 + ++ ++ +ER IARELHDS++Q L + ++ L + Q +A L+ Sbjct: 142 EETKEQVIEQERRRIARELHDSVSQQLFAAMMMISALNERKQHFDEKEQKQLAMIEHVLS 201 Query: 411 DAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVH 469 A ++R LL R +L+ L S + +L L QT ++ + + + L ++ H Sbjct: 202 QAQSEMRALLLHLRPISLENKSLKSGIEGLLVEL--QTKVQMKIHWDIEDVTLPEGVEDH 259 Query: 470 LLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMR 529 L +I +E + N ++H++A + V D N I D+G+G G YG+N M+ Sbjct: 260 LFRIAQELLSNTLRHSHAKHLEVYL-RQKDSNVIFKIEDDGVGFNVDDIHTGSYGINNMK 318 Query: 530 ERAERLGGTLTFSQPSGGGTLVSISFRSAE 559 ER + LGG + GT + I Sbjct: 319 ERVQGLGGQVKIVSFPNQGTTIEIKIPLGR 348 >UniRef50_Q2SUK5 Two-component hybrid sensor and regulator n=33 Tax=Burkholderiaceae RepID=Q2SUK5_BURTA Length = 740 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 68/285 (23%), Positives = 107/285 (37%), Gaps = 8/285 (2%) Query: 280 AEYLELNVGENWRISEGQPNPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSM 339 L+ E R+ E ++L + E EL N + Sbjct: 451 VHALQGERIERRRVQEKTVRLNEANELLEQRVAERTS-ELQTANDELRREIVERERAEEA 509 Query: 340 LGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQ 399 L R + +ER IARELHD LAQ L+ LR+ L + + E Sbjct: 510 LARSREELREIAAISSTAREQERGRIARELHDELAQTLAMLRLDLERVSTTGNE----LA 565 Query: 400 SIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLP 458 + L+ A R + + R L L A++ ++ Q + TL P Sbjct: 566 GRFTEMRGLLDGAVAATRRIASDLRPLMLDDLGLVPAIQWLVQAFQQRHGIGCTLIVDPP 625 Query: 459 TLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEP-K 517 L L +I++E++ N +HA AS + + + A D + +RDNG+G Sbjct: 626 ELDLVEPQASTTFRILQESLTNVGRHARASHVDIRLI-ADDREVMLSVRDNGVGFDTENP 684 Query: 518 EPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEE 562 +GL +RERA + GTL+ G GT + + E Sbjct: 685 RKPNSFGLVGLRERAYLVQGTLSVQTAPGRGTAIEVHIPLVRPHE 729 >UniRef50_C6P056 GAF sensor signal transduction histidine kinase n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P056_9PROT Length = 407 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 119/225 (52%), Gaps = 4/225 (1%) Query: 335 SVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPED 394 S + +LG L +A + ++ L++ER +IA E+HDSLAQ L+Y R+ TLL ++ + Sbjct: 177 SFADLLGTLLEHIKATREAKREELLKERQSIANEIHDSLAQTLNYARMNTTLLSDAVRNN 236 Query: 395 NAT-AQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTL 453 N A D +AL + +R L+T FR + A L AL+ + + + Q + L Sbjct: 237 NEVMATKYTRDIDEALEIGQKTVRTLITDFRSDMDPAGLLQALQTLSEQFRRQHNIVLHC 296 Query: 454 DCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGI 513 R+ L L + ++ I+REA+ N KH+NAS + V G + + DNG+G Sbjct: 297 SIRVADLDLPLEHEIQAYHIVREALSNIAKHSNASHARL-IVDHLCGYYVFTVEDNGVGT 355 Query: 514 GEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSA 558 P E GHYG+ IMRERA+R+GG + G GT V + F Sbjct: 356 FSPVE--GHYGIIIMRERAQRIGGEIKVESTKGLGTCVQLFFPEP 398 >UniRef50_B4D2I1 Histidine kinase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D2I1_9BACT Length = 670 Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 63/216 (29%), Positives = 102/216 (47%), Gaps = 5/216 (2%) Query: 345 YFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMAD 404 + ++ + EER IARELHDSLAQ L+ + IQL + + + Q ++ Sbjct: 436 QMETIRSQLERAAVSEERTRIARELHDSLAQHLASITIQLDAVAVRLKTEEGDTQQLLET 495 Query: 405 FSQALNDAYRQLRELLTTFR-LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALD 463 + + Q R + R TL + L +A+ E++ L + L + L Sbjct: 496 AREMAAHSMDQTRLAIWDLRSPTLARDGLVAAIHEVVQPLTERRGTLLRVTLEGEVRRLG 555 Query: 464 AQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKE---PE 520 + HLL+I++EA NA++H + ++I ++ + G V I DNG G P P Sbjct: 556 GGAENHLLRIVQEASANALQHGSPTQIEIAVLFRAQG-LMVTIHDNGAGFRVPSPGALPV 614 Query: 521 GHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFR 556 H+GL M ERA+++GG L G GT +S+ Sbjct: 615 AHFGLRGMFERAKKIGGQLVLESEPGAGTTISVWIP 650 >UniRef50_UPI000169369A sensor histidine kinase n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI000169369A Length = 224 Score = 212 bits (541), Expect = 3e-53, Method: Composition-based stats. Identities = 62/213 (29%), Positives = 106/213 (49%), Gaps = 3/213 (1%) Query: 345 YFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMAD 404 + Q + + ++EER +ARELHD+++Q L + + T R++ +D AQ + Sbjct: 4 HNAQLAEQARVSAIVEERQRLARELHDAVSQQLFAISMTATAALRTLDKDFDKAQRQIFL 63 Query: 405 FSQALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALD 463 + A ++R LL R L+ L L ++L L+ + ++ D + L Sbjct: 64 IEEMSAVAQSEMRALLLHLRPVHLEGNPLAVGLHKLLQELKAKVPIEIVEDLD-EEIRLP 122 Query: 464 AQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHY 523 ++ HL +I++EA+ N+++H+ AS++ V DG + IRDNGIG + Y Sbjct: 123 KGIEDHLFRIVQEALSNSLRHSKASKLEVKLHHRGDG-LRLSIRDNGIGFEIDNTKQASY 181 Query: 524 GLNIMRERAERLGGTLTFSQPSGGGTLVSISFR 556 GL+ MRER +GG+L G GT + I Sbjct: 182 GLHTMRERVNEIGGSLQIITAPGKGTRIEIRVP 214 >UniRef50_B2T8J5 Multi-sensor signal transduction histidine kinase n=10 Tax=Burkholderia RepID=B2T8J5_BURPP Length = 553 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 79/389 (20%), Positives = 145/389 (37%), Gaps = 47/389 (12%) Query: 220 SELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTS-QIDVHCFRHILQI----V 274 +EL +LE VE++TR L E+ RL + + Q FR I++ + Sbjct: 161 TELSSARDALEQQVEQRTRQLAESNTRLSAQIDERRRAEANLQASEARFRTIVETSPIPL 220 Query: 275 RDNEAAEYLELNVGENWRISEGQPNPELPMQILPV-----TMQETVYGELHWQNSHVSSS 329 E + L V E R G + + ++ + L + S +S Sbjct: 221 CITSMPEGVILYVNEPLRELFGLDTGMRTLTNIVDFYIDPADRDRLVSHLRAEGSFNNSE 280 Query: 330 EPL----------------------------LNSVSSMLGRGLYFNQAQKHFQQL----- 356 + L+ ++S +++ ++L Sbjct: 281 VHMRRVDGSPFWAIATARVATFGDAPAIYVGLSDITSRKRIEQELFESRNQLRELSAYME 340 Query: 357 -LLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQ 415 + EER IA E+HD L Q+L+ L++ ++LLK + +D A D + + Sbjct: 341 AIREEERKRIAMEIHDELGQLLTALKMDVSLLKMRLGKDPD-AMRKADDMRELVEKTIWM 399 Query: 416 LRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIR 475 + + R + SAL +++ + L L + +I++ Sbjct: 400 VCNVANHLRPVALNFGVVSALEWLVEDFIRRHGIPCQLHINGGEPVLPEACATAVFRIVQ 459 Query: 476 EAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEG-HYGLNIMRERAER 534 ++ N +HA+A+ V+ + +++ D+G G G YGL M+ERA Sbjct: 460 ASLTNVGRHAHATRADVTLTSTA-AALDLHVSDDGCGFDPGMARTGYSYGLLGMQERARL 518 Query: 535 LGGTLTFSQPSGGGTLVSISFRSAEGEES 563 +GG +T G GT +SI G E+ Sbjct: 519 IGGAMTIDSAQGMGTAISIHIPLTGGAEN 547 >UniRef50_A6SXZ6 Two-component sensor histidine kinase n=2 Tax=Oxalobacteraceae RepID=A6SXZ6_JANMA Length = 490 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 58/243 (23%), Positives = 101/243 (41%), Gaps = 4/243 (1%) Query: 317 GELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQV 376 G + W+ + + L + R + +H + +ER IARE+HD L Sbjct: 236 GSVQWEGIMTNITASKLEQEEIIRSRA-QLAELSEHVN-TVKEKERTRIAREIHDDLGGN 293 Query: 377 LSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSAL 436 L+ +++ L LL R +P ++ A ++ + + R + L +A+ Sbjct: 294 LTAIKMALALLTRRLPGKSSELLEKAAYVESLVDRTIETVHRIAGDLRPGILDFGLVAAI 353 Query: 437 REMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVT 496 + Q + LD L +I +EA+ N KHA AS ++V + Sbjct: 354 DWQSKEFEKQLGIPCEFVSNQAEIDLDLDQATALFRIFQEALTNIAKHAQASLVSVQLMH 413 Query: 497 APDGNHTVYIRDNGIGIG-EPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 P + I DNG GI + +G+ M ER+ +GG+L+ S GGT+V+I+ Sbjct: 414 TPQ-YVRLEIIDNGRGIELADRAKPKSFGIRGMVERSVAMGGSLSVSTAPKGGTVVAINL 472 Query: 556 RSA 558 Sbjct: 473 PLP 475 >UniRef50_D2B7Q9 Histidine kinase n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2B7Q9_STRRD Length = 412 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 58/236 (24%), Positives = 98/236 (41%), Gaps = 5/236 (2%) Query: 324 SHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQ 383 +S + LL +S+ Q ++ +++ER +ARE+HD+LAQ L+ + Q Sbjct: 175 EELSRTNRLLE--ASLAENAGLHAQLLAQAREAGVLDERQRMAREIHDTLAQGLTGIIAQ 232 Query: 384 LTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDT 442 L + + E A + ++ + R + R LQ A L AL + D Sbjct: 233 LQAAE-QMHEVPAPWRRPFGAVKNLARESLAEARRSVDALRPEPLQTARLSDALAGVADR 291 Query: 443 LQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNH 502 + + + + + LL+ +EA+ N KHA AS + V+ + Sbjct: 292 WSKLHGLPVQVTTTGTARPMTPEAEFALLRTAQEALANVAKHAGASRVGVTLSYL-EQEV 350 Query: 503 TVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSA 558 + +RD+G G G +GL IMR+R E L G+L G G +S Sbjct: 351 ALDVRDDGKGFDLASLEAGGFGLTIMRQRVEGLSGSLRVESEPGAGAGISACVPCP 406 >UniRef50_UPI0001B54FA0 histidine kinase n=1 Tax=Streptomyces sp. AA4 RepID=UPI0001B54FA0 Length = 423 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 61/217 (28%), Positives = 104/217 (47%), Gaps = 5/217 (2%) Query: 343 GLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIM 402 Q +Q +++ER +ARE+HD++AQ L+ + QL R+ + A Q + Sbjct: 205 AALHAQLLTQARQAGVLDERQRMAREIHDTVAQGLTGIVTQLQAADRA--TEAADRQRHL 262 Query: 403 ADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLA 461 A D+ + R + R L + LP AL + + + + + K+T D Sbjct: 263 AHVHTLAKDSLTEARRAVQALRPEPLADSHLPEALAGLANRVSDTSGTKVTADVEGDARP 322 Query: 462 LDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEG 521 L +++V L ++ +EA+ NA KHA A+ I ++ D + IRD+G G +G Sbjct: 323 LLPELEVTLYRVAQEALANAEKHARANRIGITLTYTSD-LIMLDIRDDGRGFAPGDRGDG 381 Query: 522 -HYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRS 557 +GL MR+R +R+ G+LT G GT+V + Sbjct: 382 TGFGLEAMRQRVQRVAGSLTIESARGEGTVVHAECPA 418 >UniRef50_Q5WCK2 Two-component sensor histidine kinase n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WCK2_BACSK Length = 354 Score = 212 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 63/220 (28%), Positives = 103/220 (46%), Gaps = 5/220 (2%) Query: 345 YFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMAD 404 + + + + ++ +ER IARELHDS++Q L + L+ +D Q Sbjct: 132 QWAEKESQLKSEIVSQERNRIARELHDSVSQQLYAASMLLSAAVNGKNQDIEALQKRCEQ 191 Query: 405 FSQALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALD 463 + +NDA +R LL R L+ + +++D+L + L+ R+ L Sbjct: 192 IEKVVNDAQNDMRALLLQLRPIQLEDQSFKEGVEQLVDSLAEKH--PLSFSVRIADAPLS 249 Query: 464 AQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHY 523 ++ L +I +EA+ NA++HA A EI++ D + I D+G+G KE G Y Sbjct: 250 PGIEDQLFRISQEAIANALRHAEAKEISLYYDKF-DQFALLKITDDGVGFDR-KEHTGGY 307 Query: 524 GLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEES 563 GLN + ERAE +G T G GT V + +G E Sbjct: 308 GLNSIEERAEEIGATTRIVSVPGQGTSVEVKVPIVKGGEE 347 >UniRef50_B5JKT1 Histidine kinase domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JKT1_9BACT Length = 729 Score = 212 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 60/218 (27%), Positives = 104/218 (47%), Gaps = 5/218 (2%) Query: 342 RGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSI 401 R +A + ++ ER +ARE+HD+L+Q L + +QL L++ E +A A S Sbjct: 511 REQDHRRAMAETEFTAILNERNRVAREIHDTLSQSLGAISVQLELVRTRANEMSAAALSH 570 Query: 402 MADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTL 460 ++ + A + R+ + R L++ DL ALR +L L + T + + Sbjct: 571 LSTAHELARGALAEARDSIWNMRSQVLERCDLSEALRRILTRLTDDTGVRFDIKVEGTKR 630 Query: 461 ALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPE 520 L ++ +LL+I +EA+ NA KH S I V + ++D+G+G + Sbjct: 631 RLPPVVENNLLRIGQEAITNACKHGKPSRIDVGLNFER-RRVCLSVKDDGVGFAIDEALN 689 Query: 521 G---HYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 G +GL +RER + LGGT+ G G L+ ++ Sbjct: 690 GSERSFGLVGLRERVDVLGGTIEVESRPGEGALIVVAV 727 >UniRef50_Q1ASU9 GAF sensor signal transduction histidine kinase n=2 Tax=Bacteria RepID=Q1ASU9_RUBXD Length = 391 Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats. Identities = 77/381 (20%), Positives = 132/381 (34%), Gaps = 60/381 (15%) Query: 237 TRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDN------------------- 277 T+DL R L + ++ LN S R L V + Sbjct: 11 TQDLERRNRELAAVNAVARELNRSVDLQEALRFTLARVAELLGLKTGWVWLMDGGEPYLA 70 Query: 278 ----------------------------------EAAEYLELNVGENWRISEGQPNPELP 303 E A + + + Sbjct: 71 ATMNLPSVLAENPPLMDGSRYCYCLDTYKKGDLLEGAANVNVLACSRLSGLVDGTDGLRY 130 Query: 304 MQILPVTMQETVYGELHWQN----SHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLM 359 +P+ ET G ++ + S LL ++ +L + + L Sbjct: 131 HASIPLYSGETKLGVMNVASHDWRSLSREDLRLLYTIGDLLSIAVERARLFARSALLGAS 190 Query: 360 EERATIARELHDSLAQVLSYLRIQLTLLKRSIPED-NATAQSIMADFSQALNDAYRQLRE 418 EER +ARE+HD++AQ L+ ++L + + A A+ ++ + R Sbjct: 191 EERNRLAREIHDTIAQGLAATALRLETAEALLEAGSPAEARKEISRALALTRTNLEEARR 250 Query: 419 LLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREA 477 + R L+ L AL + ++ + ++ + L +++ L +I +EA Sbjct: 251 SVLDLRAAPLEGRSLAEALALLAESQERESGIPVRFRAVNGARPLPPRVETGLYRICQEA 310 Query: 478 VLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGG 537 + NA +HA AS I V P G + + D+G G+ P G +G+ MRERA LGG Sbjct: 311 LNNAARHAEASRIEVLLTLTP-GEARLRVEDDGRGLDPSPAPPGRHGILGMRERARLLGG 369 Query: 538 TLTFSQPSGGGTLVSISFRSA 558 L S+ GGG V + Sbjct: 370 RLEISEAPGGGARVEAAVPLE 390 >UniRef50_C0Z627 Two-component sensor histidine kinase n=3 Tax=Bacillales RepID=C0Z627_BREBN Length = 382 Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats. Identities = 68/267 (25%), Positives = 125/267 (46%), Gaps = 7/267 (2%) Query: 291 WRISEGQPNPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQ 350 W + L ++ + + E GEL WQ + ++S V+S+ + Sbjct: 113 WEAAMKLGRGMLSYRVPELGVDEV--GELGWQINRLASQWE--EQVASLQRLSNHNAALA 168 Query: 351 KHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALN 410 + + + EER +ARELHD+++Q L + + +KR + ++ A + + Sbjct: 169 EQLKHAAVTEERQRLARELHDAVSQQLFAIAMTTAAMKRLVEKNPQRAAQQIELVEEMAA 228 Query: 411 DAYRQLRELLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVH 469 A ++R LL R LQ L A+ E+LD L + + +LT + L + ++ H Sbjct: 229 AAQAEMRALLLHLRPATLQNKSLKEAILELLDELTRKNTMQLTWEIE-DVEGLPSGIEDH 287 Query: 470 LLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMR 529 L +I++E++ N ++HA A++IAV T + + + D+G+G E YGL M+ Sbjct: 288 LFRILQESLSNTLRHARATQIAVKLFTLQE-QVRLRVTDDGVGFDPDGEKMTSYGLRSMQ 346 Query: 530 ERAERLGGTLTFSQPSGGGTLVSISFR 556 ER +GG++ G GT + + Sbjct: 347 ERVAEVGGSMEIYSAIGKGTQIEVRIP 373 >UniRef50_B5JFN8 Histidine kinase domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JFN8_9BACT Length = 403 Score = 211 bits (537), Expect = 6e-53, Method: Composition-based stats. Identities = 59/232 (25%), Positives = 102/232 (43%), Gaps = 12/232 (5%) Query: 334 NSVSSMLGRGLYFNQAQK-------HFQQLLLMEERATIARELHDSLAQVLSYLRIQLTL 386 S S + L ++A + ++L +ER IARE+HD++ L+ + +QL Sbjct: 176 ESRSKAVALTLDLDEANEKLRAFSGQIEELAATQERNRIAREIHDTIGHSLTVVNMQLET 235 Query: 387 LKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLT-LQQADLPSALREMLDTLQN 445 K I D A+ + + +R + + R + L LP AL M+ Sbjct: 236 SKALIDSDKEKAKRFLEKAQEVTRQGLTDVRSSVASLRSSPLDGKSLPGALEGMMSA-SF 294 Query: 446 QTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVY 505 K + + AL+ + L + +EA+ N KHA+ASE+ +S + + Sbjct: 295 GGGVKTRFELKGEVAALNPASEAALYRSAQEALTNVRKHADASEVKLSLDFSFPECVKLV 354 Query: 506 IRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRS 557 + DNG G ++ EG +G+ +RER + L G + S G G +S+S Sbjct: 355 VADNGKG---SEKVEGGFGIMGIRERIQLLDGEMRVSTSPGQGLELSLSLPR 403 >UniRef50_C6J7D3 ATP-binding region ATPase domain-containing protein n=2 Tax=Bacillales RepID=C6J7D3_9BACL Length = 356 Score = 211 bits (537), Expect = 7e-53, Method: Composition-based stats. Identities = 65/270 (24%), Positives = 116/270 (42%), Gaps = 16/270 (5%) Query: 304 MQILPVTMQETVYGELHWQNSHVSSSE-----PLLNSVSSMLGRGLYFNQA--------Q 350 + L + M + G L + + N++ + + + Q + Sbjct: 72 IDHLHLNMLQVAKGNLSVRMPETADQTFNGVYQEFNNMIDAMEKKMQLLQQLGEQEVVEK 131 Query: 351 KHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALN 410 + + ++EER +AR+LHD+++Q L + + + L + + + A++++ Q N Sbjct: 132 EQAAEKAVLEERRRLARDLHDTVSQQLFAIHMAASSLPKVLENNATQAETVLNQLIQMSN 191 Query: 411 DAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVH 469 A +Q+R L+ R L L AL + Q K D + + + Sbjct: 192 TAQKQMRALIAQLRPMELVGKSLAEALDQWFPDYCRQNGLKGIKDMDIQG-DMSEAKEHQ 250 Query: 470 LLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMR 529 L II+EA+ N +KHA AS +++S P + I D+G G + +G YGL M+ Sbjct: 251 LFLIIQEAMANIVKHAGASMVSLSLREGP-RQVVLSISDDGQGFSSTYQKQGSYGLTTMK 309 Query: 530 ERAERLGGTLTFSQPSGGGTLVSISFRSAE 559 ERAE+LGG G GT + + E Sbjct: 310 ERAEKLGGNAEIISKPGAGTTIRVHIPKFE 339 >UniRef50_C1XTQ5 PAS domain S-box protein n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XTQ5_9DEIN Length = 682 Score = 211 bits (537), Expect = 7e-53, Method: Composition-based stats. Identities = 54/256 (21%), Positives = 109/256 (42%), Gaps = 6/256 (2%) Query: 307 LPVTMQETVYGELHWQ---NSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERA 363 LP+ +E G L + L ++ + + + + ++ +++EER Sbjct: 424 LPMRFREESVGVLVIYLPGGEPGPNEMAFLTPIADLAAIAVENARLSEIKERQVVLEERQ 483 Query: 364 TIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTF 423 +ARELHDS++Q L + + + + + + + ++R L+ Sbjct: 484 RLARELHDSVSQALYGIALGARAAQNAAERNPQALKEPLEYVLALAEAGIAEMRALIFEL 543 Query: 424 RL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAM 482 R +LQ+ L +AL ++ + ++ L + L ++ +EA+ N + Sbjct: 544 RPESLQEEGLVAALARQAAAVRARYELQVEARLE-EEPELSLDAKEALYRVAQEAIHNVV 602 Query: 483 KHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFS 542 KHA A + ++ + P+ + ++D+G G ++ GH G MRER+E +G LT Sbjct: 603 KHAEARRVWLTLESRPEA-VLLEVQDDGKGFDPTQDFPGHLGQRSMRERSEAIGARLTVE 661 Query: 543 QPSGGGTLVSISFRSA 558 G GT V + Sbjct: 662 SAPGQGTRVQVRLPLQ 677 >UniRef50_B9XSJ3 Multi-sensor signal transduction histidine kinase n=1 Tax=bacterium Ellin514 RepID=B9XSJ3_9BACT Length = 795 Score = 211 bits (537), Expect = 8e-53, Method: Composition-based stats. Identities = 65/226 (28%), Positives = 105/226 (46%), Gaps = 8/226 (3%) Query: 340 LGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLK-RSIPEDNATA 398 L + +A Q + EER I RE+HD L Q L+ ++ L ++ R + ED+ + Sbjct: 546 LTKSREELRALAAHLQFIREEERKHITREIHDELGQSLTGFKMDLAWMRARLLGEDSKAS 605 Query: 399 QSIM----ADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTL 453 + + + ++ +++ +R L T R L L +A+ + QN+T + + Sbjct: 606 RQQLIDKIENMARLIDETANVVRRLCTELRPGVLDDLGLTAAIEWQIREYQNRTGIRCST 665 Query: 454 DCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGI 513 + L +DA+ L +I +E + N +HA AS + VS + +RDNG GI Sbjct: 666 EIESGDLGVDAERSTALFRIFQELMTNTARHAQASRVEVSLKRIG-SEIVLEVRDNGRGI 724 Query: 514 GE-PKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSA 558 E K GL MRERA LGG L + G GT+V + A Sbjct: 725 KENEKAGTKSLGLVGMRERALVLGGELEIAGKPGRGTMVRVRVPLA 770 >UniRef50_B2J8J6 Multi-sensor signal transduction histidine kinase n=1 Tax=Nostoc punctiforme PCC 73102 RepID=B2J8J6_NOSP7 Length = 928 Score = 210 bits (536), Expect = 8e-53, Method: Composition-based stats. Identities = 71/350 (20%), Positives = 139/350 (39%), Gaps = 19/350 (5%) Query: 222 LHKLYRSLEASVEEKTRDL-----HEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRD 276 L LE V ++T +L + + +L ++ ++ Q + Sbjct: 575 LADYNSVLEQQVTQRTLELQREIAERKQAEVALLESETRFRLLAEATFEAIAITEQGILL 634 Query: 277 NEAAEYLELNVGENWRI----SEGQPNPELPMQILP--VTMQETVYGELHWQNSHVSSSE 330 + E+ E + PE Q++ + E +Y + + + Sbjct: 635 DTNQTCAEMFGYELSELLGMRVMDFTAPEYREQVMQKIRSGDEGIYETVCLRKDGSTFPA 694 Query: 331 PLLNSVSSMLGRGLYFNQ-----AQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLT 385 + V S GR + ++K ++ ++ ER +A+E+HD+LAQ + + + L Sbjct: 695 EIRARVMSYRGRTIRMAAIQDITSRKQAEEATVLAERNRLAQEIHDTLAQAFTVVIVHLD 754 Query: 386 LLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLT-LQQADLPSALREMLDTLQ 444 R + D AQ ++ + + R + R L+ ++ +AL + Sbjct: 755 TASRKLTTDIEVAQKLIKAGRDLAHSGLTEARRSIKALRSQLLEDGNIFNALNRFATQMF 814 Query: 445 NQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTV 504 + ++ + L ++ +LL+I +EA+ NA K+A A EI + + ++ Sbjct: 815 SPSNTHIVCQLIGEIYPLSPDVENNLLRIGQEALTNAFKYAQAGEIQIELAYQ-ESQCSL 873 Query: 505 YIRDNGIGIGEPKEPE-GHYGLNIMRERAERLGGTLTFSQPSGGGTLVSI 553 I+D+G G +GL +M ERAE +G LT G GT VS+ Sbjct: 874 RIKDDGQGFDIASVSVINSFGLLVMSERAECIGAKLTIQSSPGQGTEVSV 923 Score = 58.7 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 28/187 (14%), Positives = 75/187 (40%), Gaps = 27/187 (14%) Query: 126 NNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVT 185 N+++ +I+ R +++ ++L + + L+ + P+ L Sbjct: 349 NDFMEEINA--------NTRTTIVLCIVALIVAVAVGVLIL-------RWIAEPVLALKK 393 Query: 186 ASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKR 245 ++ + G+++ + +ELG LA++FN M+ +L + ++ + + K+ Sbjct: 394 SALALAQGEWEKR-IKIERSDELGELARSFNNMADQLQAKFSEMQDLNKALLQSETRLKQ 452 Query: 246 RLEVL---YQCSQALNTSQIDVHCFR-----HILQIVRDNEAAEYLELNVGENWRISEGQ 297 L+ + + + + +L ++ + AEY ++ + E + Sbjct: 453 FLDAVPVAISINDPYGEIYYNNRAVQKLISVDLLPSIKPEKIAEYYQIYLAETDYL---Y 509 Query: 298 PNPELPM 304 P ELP+ Sbjct: 510 PTDELPI 516 >UniRef50_UPI00017893B7 integral membrane sensor signal transduction histidine kinase n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI00017893B7 Length = 357 Score = 210 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 62/232 (26%), Positives = 115/232 (49%), Gaps = 3/232 (1%) Query: 334 NSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPE 393 + VSS+ Q + + ++EER +ARELHD+++Q L + + T + R++ + Sbjct: 120 DQVSSLQRLSTNNAQLAEQARVTAIVEERQRLARELHDAVSQQLFAISMTATAVGRTLDK 179 Query: 394 DNATAQSIMADFSQALNDAYRQLRELLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLT 452 D AQ +A + A ++R LL R L+ L LR+++ L+ + ++T Sbjct: 180 DFDKAQRQVALIEEMSAVAQSEMRALLLHLRPVYLEGKALEQGLRDLITELRIKVPMEIT 239 Query: 453 LDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIG 512 + + L ++ HL +II+EA+ N ++H+ A ++ + + V +RD+G+G Sbjct: 240 FEMD-DDIHLLKGIENHLFRIIQEAMSNTLRHSKAEKMDIRIHRRQN-TVRVMLRDDGVG 297 Query: 513 IGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEESQ 564 + + YGL+ M+ER +GG+L F G GT + I E + Sbjct: 298 FELDDKKQTSYGLSTMQERVTEIGGSLQFITAPGKGTRIEIIVPLINEERKR 349 >UniRef50_B9XSI9 Multi-sensor signal transduction histidine kinase n=1 Tax=bacterium Ellin514 RepID=B9XSI9_9BACT Length = 656 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 75/319 (23%), Positives = 125/319 (39%), Gaps = 16/319 (5%) Query: 249 VLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQILP 308 Y S L+ S + IV +N LE + GQ + I Sbjct: 334 FGYDVSGMLSLSSVFDVIVEKERPIVSENV-RLRLEGQIEGIRYRFHGQRKDAGLLTIEA 392 Query: 309 VTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEE--RATIA 366 + + GE + +E ++ Q Q ++LL ++E R IA Sbjct: 393 HGFKAELNGEPVILGTAQDVTEREMDEAELKRTT----EQLQTLSRRLLELQESERRHIA 448 Query: 367 RELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLT 426 RELHD + Q L+ L+I L ++R ++ + D ++ RQ+R L R + Sbjct: 449 RELHDEIGQGLTALKINLQAVQRMA--NSTAFSPRLLDSIGIVDKTLRQVRNLSLDLRPS 506 Query: 427 -LQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHA 485 L L +ALR D + ++ + D ++ ++ +EA+ N ++HA Sbjct: 507 MLDDLGLFAALRWYADQQAQRAGLRIQFAAEPMEMRQDPALETACFRVAQEALTNIVRHA 566 Query: 486 NASEIAVSCVTAPDGNHTVYIRDNGIGIG-----EPKEPEGHYGLNIMRERAERLGGTLT 540 A + + A + + + IRD+GIG E GL M ERA +GG + Sbjct: 567 EAQNVTIDLNVA-EKDLQLTIRDDGIGFDMKKVREHVAAGSSLGLLGMEERASLMGGRVE 625 Query: 541 FSQPSGGGTLVSISFRSAE 559 F G GT V F ++ Sbjct: 626 FKSTPGEGTEVYAWFPISK 644 >UniRef50_B5JLS1 Histidine kinase domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JLS1_9BACT Length = 687 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 59/214 (27%), Positives = 101/214 (47%), Gaps = 2/214 (0%) Query: 344 LYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMA 403 + + + +++ER +ARE+HD+LAQ + + IQL K +P A +S + Sbjct: 472 QQRRRIIREAEFAAMIKERMRLAREIHDNLAQGFTAVSIQLETAKHKLPAAAAPVRSHLD 531 Query: 404 DFSQALNDAYRQLRELLTTFR-LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLAL 462 S + ++ R + R +L AD +AL + + T + + L Sbjct: 532 QASALVRESLADARRSIQGLRHESLSNADFLAALERIAGRVLKDTPIAFQQELKGDVARL 591 Query: 463 DAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGH 522 A+ + L+ I EA+ N +KHA A I +SC + + T+ I D+GIG + + P Sbjct: 592 GAEAENELIAIATEAITNTVKHAQAKRIQISCQIH-EAHGTLSISDDGIGFRKDQPPPSG 650 Query: 523 YGLNIMRERAERLGGTLTFSQPSGGGTLVSISFR 556 +GL M+ERA ++ TLT GT ++I Sbjct: 651 FGLQGMQERAAKIHATLTLDSSPKQGTRITIHIP 684 >UniRef50_Q47FQ9 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, dimerization and phosphoacceptor region n=1 Tax=Dechloromonas aromatica RCB RepID=Q47FQ9_DECAR Length = 373 Score = 210 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 78/315 (24%), Positives = 126/315 (40%), Gaps = 11/315 (3%) Query: 251 YQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQILPVT 310 Y+ Q L + L +R+ E G + + P P ++L Sbjct: 68 YELCQRLKDNPKTREIPVIFLSALRETEDKVR-----GFSLGAVDYIAKPFQPEEVLARV 122 Query: 311 MQETVYGELHWQ-NSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIAREL 369 L + V+ L S L Q F Q + EER IAREL Sbjct: 123 RTHIELRRLQCRLEERVAERTEQLRQSSDELRASRERLQELAAFLQSVREEERTAIAREL 182 Query: 370 HDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRL-TLQ 428 HD L Q L+ LRI L + R Q+ + +R + R L Sbjct: 183 HDELGQALTALRIDLAWINRQCKTLGPEVQARADASCAIVERTIDAVRRISEGLRPGMLD 242 Query: 429 QADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANAS 488 L +A+ +++ + L A+D ++ + + ++I+EA+ N ++HA+A+ Sbjct: 243 VLGLTAAIEYLVEQFAKRNDIPCYLTSDRDEFAIDDRVSIAVFRLIQEALTNVVRHASAT 302 Query: 489 EIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGG 548 + ++ + + V IRDNGIG+ EP+ +GL MRER LGGT+ G Sbjct: 303 RVDITL-SQDNNTICVDIRDNGIGLA-TGEPKQGFGLLGMRERVTMLGGTIDIDGS--RG 358 Query: 549 TLVSISFRSAEGEES 563 T + F +GE+S Sbjct: 359 TRILARFPLFKGEKS 373 >UniRef50_Q0A821 Signal transduction histidine kinase, nitrate/nitrite-specific, NarQ n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A821_ALHEH Length = 446 Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 66/272 (24%), Positives = 122/272 (44%), Gaps = 16/272 (5%) Query: 301 ELPMQILPVTMQETVYGELHWQNSHVSSSE-------PLLNSVSSMLGRGLYFNQAQKHF 353 +L + +P+T + G V + +L LG + + + Sbjct: 165 DLHLLAVPLTADDRRLGVFSLFLEPVMLQQWQQLNLHRMLQMAGEHLGLAMERIRRESEA 224 Query: 354 QQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIP--EDNATAQSIMADFSQALND 411 + L +ER+ I ELHD LAQ L+ L +++ L+ S ++ + + L+ Sbjct: 225 RLQSLEQERSQITHELHDCLAQRLAALGLEVRNLEASHGGGRAPGGLRAGLRHVRRGLDQ 284 Query: 412 AYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLL 471 AY +LR+L+ FR+ L+ L AL+ ++ Q + ++ L P L + +L Sbjct: 285 AYGELRQLMGQFRIALEGGGLEPALKRLVHRFQRDSGIRVLLSHDWPRGRLSPDQEFQVL 344 Query: 472 QIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGE--PKEPEG----HYGL 525 +I++EA+ N H+ A + V+ + + + D+G G + P +G H GL Sbjct: 345 RIVQEALNNVRNHSGARHVQVALHRIG-CDMELVVEDDGRGFADSPPDHRDGDDGHHLGL 403 Query: 526 NIMRERAERLGGTLTFSQPSGGGTLVSISFRS 557 +MR+RA+ +GG L G GT +++ S Sbjct: 404 GVMRDRADAIGGHLEIQSELGEGTRIAVYLPS 435 >UniRef50_A6WW19 Integral membrane sensor signal transduction histidine kinase n=46 Tax=Rhizobiales RepID=A6WW19_OCHA4 Length = 485 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 59/228 (25%), Positives = 106/228 (46%), Gaps = 7/228 (3%) Query: 342 RGLYFNQAQKHFQQLL--LMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQ 399 R + N+ ++ Q+++ EERA +ARELHD ++Q L +R + L R + D+ A Sbjct: 255 RRMADNKLKELAQRIIDTQEEERARLARELHDGISQNLVGVRYAIDLASRQVRMDSGGAP 314 Query: 400 SIMADFSQALNDAYRQLRELLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLTLDCRLP 458 + S ALN A +++R L R L L AL+ + + +T + L+ Sbjct: 315 LAIEKASDALNGAIKEVRRLSHDLRPRILDDLGLTVALKALCEHFSERTGIETQLEASGL 374 Query: 459 TLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGI--GEP 516 L + L ++++EA+ N +H+ AS++++ G T+ + D+G G + Sbjct: 375 NETLKPEASTALYRVVQEALTNVERHSGASQVSIRLW-GSGGKVTMTVADDGNGFTARDL 433 Query: 517 KEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEESQ 564 K+ GL M+ER GG L + GT ++ + E + Sbjct: 434 KDQLSGLGLRNMQERMAHFGGVLLVETGAD-GTQLTARLPKSATERKR 480 >UniRef50_D0BKY9 Sensor histidine kinase VraS n=1 Tax=Granulicatella elegans ATCC 700633 RepID=D0BKY9_9LACT Length = 351 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 61/235 (25%), Positives = 110/235 (46%), Gaps = 7/235 (2%) Query: 329 SEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLK 388 E L+ ++ + R Y + ++ ++ ER IARELHDS++Q L + L+ + Sbjct: 123 QEQLVQNLQQISSRPEYIGE---ETKEEIIELERHRIARELHDSVSQQLFAAMMMLSAMN 179 Query: 389 RSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQT 447 + + Q +A + +ND+ ++R LL R +L+ L + +L L T Sbjct: 180 EQKEQLSPVIQQQLALVEKVINDSQSEMRALLLHLRPISLENKTLVQGIESLLKELT--T 237 Query: 448 SAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIR 507 +L+L L + L + + HL +I++E V N ++HA A ++ V + D + + Sbjct: 238 KVQLSLHWELDEVTLPSTFEDHLFRIVQELVSNTLRHAKAKQLEV-FLKQKDDYIILKLV 296 Query: 508 DNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEE 562 D+GIG G YGL + ER +GG + GT++ I + +E Sbjct: 297 DDGIGFDTSVSKAGSYGLKNIEERVAGMGGQCKIISIANQGTIIEIKIPQKQEKE 351 >UniRef50_C5AIA0 Multi-sensor signal transduction histidine kinase n=24 Tax=Burkholderia RepID=C5AIA0_BURGB Length = 769 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 51/237 (21%), Positives = 100/237 (42%), Gaps = 17/237 (7%) Query: 345 YFNQAQKHFQQL------LLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPED---- 394 +++ ++L + EE+ IARELHD L Q L+ L++ L+ ++ + D Sbjct: 533 ALKASREELRELSANLQRVREEEKTRIARELHDDLGQQLTALKMDLSAVEHRLLRDGTGE 592 Query: 395 -NATAQSIMADFSQALNDAYRQLRELLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLT 452 +A+ + + + ++ +R + R L L A+ + + N+ ++ Sbjct: 593 AHASVVEPLREMRRLIDATVASVRRIAADLRPVMLDDLGLVPAIEWLANDFTNRYGIEVE 652 Query: 453 LDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIG 512 + L +I++EA+ N +HA AS +A++ D + I D+G+G Sbjct: 653 RRIDPGDVRFPNATATALFRIVQEALTNVARHAEASHVALTL-GIEDRQCVLRIVDDGVG 711 Query: 513 IGEPKEPEG----HYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEESQL 565 + +GL +RERA LGGT+ G ++I+ + L Sbjct: 712 ADQADGRRAPDDKSFGLLGIRERAHMLGGTVRMETARNQGYALTITIPLPSTPDPNL 768 >UniRef50_C5V7S2 PAS/PAC sensor signal transduction histidine kinase n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V7S2_9PROT Length = 647 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 60/270 (22%), Positives = 107/270 (39%), Gaps = 4/270 (1%) Query: 290 NWRISEGQPNPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQA 349 NW + + L T + G W V+ +E + L + Sbjct: 381 NWEGRVLSADNGIKWINLRATPRMLAGGGCIWDGVAVNVTES--KGIEEKLLHSQQMLRE 438 Query: 350 QKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQAL 409 + + +E IARE+HD L Q L+ LR+ ++L++ + E N + + SQ + Sbjct: 439 LSAHLENIREDEHRHIAREIHDELGQALTALRMDVSLVRLNFGEANPQLLTHLQSMSQRV 498 Query: 410 NDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVH 469 +R + ++ R + +AL + + T + L +ALD Sbjct: 499 QRTVDIVRHITSSLRPGALDMGIVAALEWLAEEFTGYTQIQCELALNDGNIALDEFSATA 558 Query: 470 LLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPK-EPEGHYGLNIM 528 + +I++E++ N +HA A+++ V VT + + DNG G E +GL + Sbjct: 559 VFRIVQESLTNIARHAQATQVEV-IVTRSEDELCFEVCDNGTGFDPGAIENCKSFGLIGI 617 Query: 529 RERAERLGGTLTFSQPSGGGTLVSISFRSA 558 RER L G G GT + + A Sbjct: 618 RERVAMLSGHFEIESRQGAGTCLRVHIPVA 647 >UniRef50_D1CAA4 GAF sensor signal transduction histidine kinase n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1CAA4_SPHTD Length = 555 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 70/309 (22%), Positives = 129/309 (41%), Gaps = 9/309 (2%) Query: 264 VHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETVYGELHWQN 323 FR L+ + + L+ + + + P+ V G L Q+ Sbjct: 246 SEVFRRALEERQPVMVGDVLDAEATPMRSVGHTRTKVRSVIAA-PLIQGNEVIGLLSAQS 304 Query: 324 ----SHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSY 379 + LL ++++ + + + Q L + EER +ARE+HD+LAQ L Sbjct: 305 YVPHRYRECDARLLMTIANHAVVAIENARLYRQAQSLAIAEERNRLAREIHDTLAQGLIG 364 Query: 380 LRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLT-LQQADLPSALRE 438 + + L L IP+D+ + ++ + R + R L+ L AL Sbjct: 365 IILYLERLDLEIPQDDRRFRPLVERALSLARGNLEEARRSVHDLRAAPLEGRTLVEALAH 424 Query: 439 MLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAP 498 + + L+ + ++ L L A+++ L ++++EA+ NA KHA +A+ A Sbjct: 425 LAEDLRKERLFEVELSVPRALPLLAARVETALFRMVQEAISNARKHAGCKSLAIRLSVAG 484 Query: 499 DGNHTVYIRDNGIGIGEPK--EPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFR 556 G T+ + D+G G + +GL+ MRER ++GG T G GTLV + Sbjct: 485 -GMVTLEVHDDGRGFEVERVLGEAHRFGLSTMRERITQVGGEFTVESCPGDGTLVRATIP 543 Query: 557 SAEGEESQL 565 ++ S+ Sbjct: 544 LSQATHSES 552 >UniRef50_B9TKD1 Putative uncharacterized protein (Fragment) n=1 Tax=Ricinus communis RepID=B9TKD1_RICCO Length = 383 Score = 208 bits (531), Expect = 3e-52, Method: Composition-based stats. Identities = 55/223 (24%), Positives = 97/223 (43%), Gaps = 2/223 (0%) Query: 333 LNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIP 392 L + L Q + ++ ER IARE+HD L Q+LS LR+ ++ L Sbjct: 162 LKASERHLEESRAQLQMLTYHREEAREGERKRIAREIHDELGQLLSVLRLGISTLDYGYG 221 Query: 393 EDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLT 452 + N ++ A ++ A + L T R + ++ + AL ++ T Sbjct: 222 DTNPDLRNKTAKMGAVVDQAIDMVHTLATRLRPAVLESGIALALEWLVQEFSKSTGIDCE 281 Query: 453 LDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIG 512 L + D + + + +I++E++ N ++H+ A + + T + + I DNG G Sbjct: 282 LSVPDEDIDFDKERALPVFRIVQESLTNILRHSQADHVEIEL-TQDQEHLKLSIHDNGQG 340 Query: 513 IGEPKE-PEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSIS 554 K +G +G+ M ER LGGTL S S GT + + Sbjct: 341 FEVSKATKKGSFGIIGMHERILMLGGTLEISSSSEQGTEIRLE 383 >UniRef50_Q45827 Uncharacterized sensor-like histidine kinase Caur_0899 n=4 Tax=Chloroflexaceae RepID=Y899_CHLAA Length = 597 Score = 208 bits (531), Expect = 4e-52, Method: Composition-based stats. Identities = 92/478 (19%), Positives = 177/478 (37%), Gaps = 74/478 (15%) Query: 147 MLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAP--LNQLVTASQRIEHGQFDSPPLDTNL 204 + ++SL G+ + + + +++AP L L+ G + Sbjct: 129 IRQSRSVSLLSGL-LAAVAYMAAFIAWRRLIAPEALMTLLDYVALALRGTTLAIVPWVTG 187 Query: 205 PNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDV 264 L FN+ + + R E ++ E + ++ LY+ + L ++ Sbjct: 188 N--LAERQSEFNR--ERVTQAQRDAEQALSEA----RAYRDQMRSLYRVALTLGSTANYR 239 Query: 265 HCFRHILQ---------------------------------------IVRDNEAAEYLEL 285 +LQ + D A L Sbjct: 240 QVLDTLLQESQKIVPYRAGIVLLSSGQPNELYVAFGSNLAPGDLNRSLKMDTGLAAALRA 299 Query: 286 NVGENWRISEGQPNPEL--------PMQILPVTMQETVYG--ELHWQNSHVSSSEPLLNS 335 N + P+ + +LP+ VYG + + + +L + Sbjct: 300 NTAQVITSFTQFPSLQQLGSLRTCKAAALLPLQAGMRVYGLFVVATDQTLTTDQVEMLMA 359 Query: 336 VSSMLGRGLYFNQA----QKHFQQLLLMEE--RATIARELHDSLAQVLSYLRIQLTLLKR 389 +++ L+ Q ++ ++LL EE R +AR+LHD AQ ++ + ++ +KR Sbjct: 360 LANYAIVALHNAQLIYDLKEEREKLLSHEEEVRHQLARDLHDGPAQAMAVITMKAEFIKR 419 Query: 390 SIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTS 448 + D A A + + + S ++R +L R L+ L L + LD L+ + Sbjct: 420 LLERDPAQALAELDELSSIAKRTNYEVRTMLFELRPLMLETQGLKVTLEQYLDRLRAKAG 479 Query: 449 -AKLTLD-CRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYI 506 + L+ + + L ++++ L +I+E+V NA+KHA A+ I V D V I Sbjct: 480 NTAIVLEGTDIDKVRLGSKVEGALFNMIQESVTNAIKHAKANHIWVRLRRLNDQMLEVVI 539 Query: 507 RDNGIGIGEPK-----EPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAE 559 +D+G+G + E G +GL + ERA +GG G GT ++I Sbjct: 540 QDDGVGFDKAAVLKSYERRGSFGLLNIDERARLVGGRAEIDSTPGKGTQITIFVPIES 597 >UniRef50_D2SEJ2 Integral membrane sensor signal transduction histidine kinase n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2SEJ2_9ACTO Length = 372 Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats. Identities = 54/244 (22%), Positives = 98/244 (40%), Gaps = 3/244 (1%) Query: 315 VYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLA 374 + G + + + + + ++L ER +AR++HD L Sbjct: 129 LLGAAVFTAVVTALLQREQRARVELAEANEQLRGYAAQAEELATTRERNRLARDIHDGLG 188 Query: 375 QVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPS 434 L+ +++Q+ + + D A +++A Q +DA ++R + R L Sbjct: 189 HHLTVVQMQVQAARAQLSSDPERADAVLAKAQQQASDALAEVRRSVAALRGPRTAPPLRV 248 Query: 435 ALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSC 494 AL + L+ L A+ + L + +E + N KHA AS V+ Sbjct: 249 ALEALTAEFSA-AGVPAPLEVVGTERPLPAEAEESLFRSAQEGLTNVGKHATASSARVTL 307 Query: 495 VTAPDGNHTVYIRDNGIGIGEPKEP--EGHYGLNIMRERAERLGGTLTFSQPSGGGTLVS 552 DG + +RD+G G+ G +GL ++ERA R GG L+ + GGGT + Sbjct: 308 TYGDDGTVRLRVRDDGRGLPAGGHGPYPGGFGLVGLQERAARAGGQLSVASVPGGGTELL 367 Query: 553 ISFR 556 + Sbjct: 368 VEVP 371 >UniRef50_C0Q8Z0 Two-component hybrid sensor and response regulator histidine kinase n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0Q8Z0_DESAH Length = 708 Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats. Identities = 59/227 (25%), Positives = 99/227 (43%), Gaps = 10/227 (4%) Query: 342 RGLYFNQAQKHFQQLL--LME----ERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDN 395 R + + Q ++L +ME ER +ARELHD L QVL+ L+I ++R + + Sbjct: 482 RTVELEKVQDKLRKLSGSIMEAHEIERGALARELHDHLGQVLTALKIDAVWIERFLSPRD 541 Query: 396 ATAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLD 454 A S ++D +R++ R L L AL + + ++ Sbjct: 542 PDAAVRAGRISSLIDDTIGDVRKMAFRLRPGVLDDLGLVEALESLTGDFEERSDITCLFQ 601 Query: 455 CRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIG 514 +D+ + L +I +EA+ NA++H+ AS +A++ G + I+DNG+G Sbjct: 602 AAALP-DIDSTLATALYRIAQEALTNAIRHSRASIVALTLA-MDQGKLVLKIKDNGVGFA 659 Query: 515 -EPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEG 560 + +GL M+ERA GG L GT V + G Sbjct: 660 FDDINENQGFGLAGMQERATLAGGVLEIVSGPEQGTSVCCFVQVHGG 706 >UniRef50_Q67MG9 Sensor protein n=1 Tax=Symbiobacterium thermophilum RepID=Q67MG9_SYMTH Length = 558 Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats. Identities = 60/270 (22%), Positives = 101/270 (37%), Gaps = 22/270 (8%) Query: 307 LPVTMQETVYGELHWQNSHV----SSSEPLLNSVSSMLGRGLYFNQAQKHFQQ------- 355 +P+ V G + S +L ++ +G + + + Sbjct: 265 IPLGQGGKVAGIMVLMIPPSRYLSPSDREILTALGEQIGLAIDRARLYDQLAEKERLRGR 324 Query: 356 ------LLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQAL 409 +ER IARELHD + Q L+ L + L L R P + + + Sbjct: 325 LLARLITAQEDERRRIARELHDEIGQALTALVVTLDFLVRH-PLSEEMLRQRLVAVKEMA 383 Query: 410 NDAYRQLRELLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQV 468 ++R ++ R T L L +A+R ++ K+ + L +++ Sbjct: 384 ETGLTEVRRVIHEMRPTALDDLGLEAAIRWLVRRY-EDAGLKIDVQIEGLEERLPDYIEI 442 Query: 469 HLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIM 528 + ++I+EA N +KHA AS I ++ TV + D+G G + EG GL + Sbjct: 443 TVFRLIQEACTNTVKHAAASHIRIAL-RHRGNWLTVEVTDDGKGFDIKRRGEG-VGLTGI 500 Query: 529 RERAERLGGTLTFSQPSGGGTLVSISFRSA 558 RER GG LT GT V Sbjct: 501 RERVSLAGGKLTIESGPDSGTRVYAELPVE 530 >UniRef50_Q0KDJ4 Signal transduction histidine kinase containing PAS/PAC sensor domain n=3 Tax=Burkholderiales RepID=Q0KDJ4_RALEH Length = 355 Score = 208 bits (530), Expect = 5e-52, Method: Composition-based stats. Identities = 58/224 (25%), Positives = 98/224 (43%), Gaps = 11/224 (4%) Query: 344 LYFNQAQKHFQQL------LLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNAT 397 +++ ++L + ER I+RELHD L Q L+ LR+ L+ ++ D Sbjct: 125 QELLESRAQLRELSAYLQSVREAERTRISRELHDELGQSLTALRLGLSFIEAQQGPDAGD 184 Query: 398 A-QSIMADFSQALNDAYRQLRELLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLTLDC 455 A + + Q + ++ + R L + L +A+ + ++ + L Sbjct: 185 ACRKHLQMLKQIADSTVDAVQRIAADLRPPLLDELGLTAAIEWLAESFSERGGIACELAL 244 Query: 456 RLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGE 515 + P L A++ + +I +EA+ NA +H A + V +A G + + DNG GI Sbjct: 245 Q-PVGELSAELSTAVFRIAQEALTNACRHGRADRVRVEL-SAAGGTLRLVVADNGRGIDA 302 Query: 516 PKEP-EGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSA 558 + GL MRERA LGG L + GGGT V +A Sbjct: 303 SRAGHRRSLGLLGMRERALMLGGKLAVTSEKGGGTRVEAQIPNA 346 >UniRef50_C6XAR1 PAS/PAC sensor signal transduction histidine kinase n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6XAR1_METSD Length = 465 Score = 208 bits (530), Expect = 5e-52, Method: Composition-based stats. Identities = 54/234 (23%), Positives = 102/234 (43%), Gaps = 8/234 (3%) Query: 332 LLNSVSSMLGRGLYFNQAQKHFQQL------LLMEERATIARELHDSLAQVLSYLRIQLT 385 ++ +++ L ++++ +L + +ER IARE+HD L L+ ++I LT Sbjct: 231 IITNITQSKNEKLEIERSRQRMAELSAHLTQVKEQERRRIAREIHDDLGGNLTAIKIGLT 290 Query: 386 LLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQN 445 + + I D + ++ + + + + R + + + +AL + Sbjct: 291 SIIKRINPDEPKLVEKALNLESIVDRTFDIVHRIASDLRPDVLELGIVAALEWQCGQFEK 350 Query: 446 QTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVY 505 Q S LA+ A + L +I +EA+ N KHA A ++ V + D + + Sbjct: 351 QFSLPCRFYSSQTELAVSADEAITLFRICQEAMSNIAKHARARQVEVELLV-EDRDIMLR 409 Query: 506 IRDNGIGIG-EPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSA 558 I D+G GI + + +GL MRER L G+L + GGT V + + Sbjct: 410 IVDDGQGIRMQDQHKANSFGLRGMRERVAALDGSLEVEKRVRGGTAVQVKIPRS 463 >UniRef50_B8FFK0 PAS/PAC sensor signal transduction histidine kinase n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FFK0_DESAA Length = 832 Score = 208 bits (529), Expect = 6e-52, Method: Composition-based stats. Identities = 75/396 (18%), Positives = 143/396 (36%), Gaps = 17/396 (4%) Query: 183 LVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHE 242 L +R E G F + E + NQ +L + + LE V +T ++ Sbjct: 440 LSAIGERDEEGNFVRSLAVSVDVTEQKKAQEALNQAQEKLSQHSQELERQVFRRTEEISS 499 Query: 243 AKRRLEVLYQC----SQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQ- 297 + L + + ++ F + VR E + + +R + + Sbjct: 500 ILKYTPNLVHIKDADGRYIMVNRRYEEIFGISNEDVRGRTQHESMPREYADAFREVDHRV 559 Query: 298 -PNPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQL 356 + V + + L + + + ++++ + +AQ+ ++L Sbjct: 560 LSEKKPVRSEYVVRVDGEDHSYLSVKFP-IYDEQGRIHAIGGISTDVTEIKKAQEALRRL 618 Query: 357 L------LMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALN 410 ER IARELHD L Q+L+ LR+ K+ + + +A Q + + ++ Sbjct: 619 SNRMIISQEAERQAIARELHDELGQILTVLRMDAVWFKKRLKDSDAATQERASAMCELID 678 Query: 411 DAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVH 469 +R + R L L AL + +T + L + Sbjct: 679 KTIEDVRGIAVRLRPGVLDDLGLVDALEWYTSDFERRTGITCIFEHD-NIPNLGNAISTA 737 Query: 470 LLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEP-KEPEGHYGLNIM 528 +I +EA+ N ++HA+ VS + T+ I DNG+G E G+ M Sbjct: 738 AYRIAQEALTNVVRHASTDRADVSL-SFDQEEFTLIISDNGVGYDGGMVEESEGLGIAGM 796 Query: 529 RERAERLGGTLTFSQPSGGGTLVSISFRSAEGEESQ 564 RERA GGTL G+ + + + + + Sbjct: 797 RERAMLAGGTLEVEAGEDAGSRIIFRIKVSGANKEK 832 >UniRef50_A8LRP9 Integral membrane sensor signal transduction histidine kinase n=28 Tax=Rhodobacterales RepID=A8LRP9_DINSH Length = 480 Score = 208 bits (529), Expect = 6e-52, Method: Composition-based stats. Identities = 62/220 (28%), Positives = 106/220 (48%), Gaps = 5/220 (2%) Query: 342 RGLYFNQAQKHFQQLL--LMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQ 399 R L + + Q++L EER +ARELHDS++Q+L +R L L +R + +A AQ Sbjct: 242 RRLADAKLKALTQRVLDTQEEERGRVARELHDSISQLLVGIRYALELARRRVQTGDARAQ 301 Query: 400 SIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLP 458 + LN A +++R + R L L A++++ + +T + + + Sbjct: 302 ENIEKGIDGLNGAIQEVRRISRDLRPGQLDDLGLGPAIQDLAEEFTKRTGIRAEMKTVVF 361 Query: 459 TLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKE 518 LD + ++ L +I +EA+ N +HA A+E+ + G T+ + DNG G+ Sbjct: 362 RNRLDPEAKIALYRIAQEALTNIERHAQATEVHLDLFGHQTG-ATLRVADNGRGLANVSR 420 Query: 519 PEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSA 558 G GL M+ER E+L GTL GT + + + Sbjct: 421 GAGGLGLRNMQERVEQLDGTLQVFSSE-AGTRIDATVPLS 459 >UniRef50_Q9KDL3 Two-component sensor histidine kinase n=1 Tax=Bacillus halodurans RepID=Q9KDL3_BACHD Length = 351 Score = 208 bits (529), Expect = 6e-52, Method: Composition-based stats. Identities = 58/228 (25%), Positives = 103/228 (45%), Gaps = 3/228 (1%) Query: 330 EPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKR 389 E + V+S+ + Q+ ++ + EER +AR+LHD+++Q L + + +K+ Sbjct: 120 ERVEEQVASLQRLSSERAKMQETVKKAAVTEERQRLARDLHDAVSQQLFAISMMTAAIKQ 179 Query: 390 SIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLT-LQQADLPSALREMLDTLQNQTS 448 ++ E Q M + N A ++R LL R L+ L + +L L+ + Sbjct: 180 NLHEATEEVQQQMDVVEKMANTAQAEMRALLLHLRPAELEGKSLQQGVEYLLHELEQKQG 239 Query: 449 AKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRD 508 K+T P L ++ L ++++EA+ N ++HA A + V + + + D Sbjct: 240 FKITKRLE-PMDELPKGVEDQLFRMLQEAISNILRHAQAHHVEVRFWQT-ERQVRLKLID 297 Query: 509 NGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFR 556 +G+G KE G YGL M ER +GG L G GT + Sbjct: 298 DGVGFDVQKETHGSYGLQTMHERINEIGGVLDIVSAPGKGTQLEAKIP 345 >UniRef50_B5VVU4 Integral membrane sensor signal transduction histidine kinase n=3 Tax=Oscillatoriales RepID=B5VVU4_SPIMA Length = 452 Score = 208 bits (529), Expect = 6e-52, Method: Composition-based stats. Identities = 51/217 (23%), Positives = 96/217 (44%), Gaps = 10/217 (4%) Query: 346 FNQAQKHFQQ-------LLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATA 398 +A + ++ + +ER IARE+HDS+ L+ IQL I ED A Sbjct: 227 LAEANQQLREYAMLIEDRAISQERNRIAREIHDSVGHHLTAQSIQLENAALFIAEDKQRA 286 Query: 399 QSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLP 458 + + +A +++R + ++R + AL +++ + TS + + ++P Sbjct: 287 ARHLQQARELGKEALKEVRASVKSWRSHPLKQSFLQALSQLISEFEATTSVPVASNLQIP 346 Query: 459 TLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKE 518 L + + L ++I+EA+ N KHA A+++ + + + I DNG G + Sbjct: 347 D-TLPLDISIVLYRVIQEALTNISKHAQATKVDLFLL-ENSREFALKIEDNGCGFNPAQN 404 Query: 519 PEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 G +GL M ER +GG + G G + + Sbjct: 405 TTG-FGLQGMGERVMAVGGHFDLNSSPGEGCKIEVKI 440 >UniRef50_Q2LRG0 Signal transduction histidine kinase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LRG0_SYNAS Length = 519 Score = 208 bits (529), Expect = 6e-52, Method: Composition-based stats. Identities = 51/227 (22%), Positives = 94/227 (41%), Gaps = 10/227 (4%) Query: 345 YFNQAQKHFQ------QLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATA 398 ++++ + Q + EER IARE+HD L Q L+ ++ L+ L + + + Sbjct: 295 ELEESREKMRNLSIHLQSVREEERTRIAREIHDELGQSLTAFKMDLSWLGKRMTSEK-LL 353 Query: 399 QSIMADFSQALNDAYRQLRELLTTFRLTL-QQADLPSALREMLDTLQNQTSAKLTLDCRL 457 + S ++ + + R L L +A+ ++ D Sbjct: 354 HDKIKAMSGLVDRTIESVHRISADLRPGLLDDLGLVAAMEWQAKEFSARSGIACEADLEA 413 Query: 458 PTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPK 517 + LD + + +I +E + N +H+NA+++ V T D + + DNG GI + + Sbjct: 414 EDVPLDKEPATAVFRIFQETLTNVARHSNATKVFVRLETKGD-KVILEVTDNGRGITQKQ 472 Query: 518 -EPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEES 563 +G+ MRERA GG + GT V +S GE+ Sbjct: 473 INDPKSFGIMGMRERALLWGGDVQVIGSRSRGTTVKVSIPLKSGEKE 519 >UniRef50_B1YJQ1 Integral membrane sensor signal transduction histidine kinase n=2 Tax=Exiguobacterium RepID=B1YJQ1_EXIS2 Length = 341 Score = 208 bits (529), Expect = 6e-52, Method: Composition-based stats. Identities = 58/211 (27%), Positives = 100/211 (47%), Gaps = 4/211 (1%) Query: 348 QAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQ 407 Q + + + EER +AR+LHDS++Q L + + T K++I TA + Sbjct: 128 QHIEQVRVQAITEERKRLARDLHDSVSQQLYAISMMTTAAKQTILTQPETAAKQIDLVET 187 Query: 408 ALNDAYRQLRELLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQM 466 A ++R LL R L+ L L ++L+ L + S L +L + L + Sbjct: 188 MAQTAQSEMRSLLLQLRPVELEGMTLQQGLTQLLEELSRKQS--TELSWKLEVIELPRPI 245 Query: 467 QVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLN 526 + L +I++E + NA++HA AS + + D + + D+G+G ++ YG+N Sbjct: 246 ENELFRIVQEGLTNALRHAKASHMDIELRQFND-TVILSMNDDGVGFVVDEKKLASYGIN 304 Query: 527 IMRERAERLGGTLTFSQPSGGGTLVSISFRS 557 MRER +GGT+ G GT + + R Sbjct: 305 SMRERTAEMGGTIRLVSVPGQGTQIEVKLRK 335 >UniRef50_C3PKA7 Two-component system sensor kinase n=2 Tax=Corynebacterium RepID=C3PKA7_CORA7 Length = 419 Score = 208 bits (529), Expect = 6e-52, Method: Composition-based stats. Identities = 66/217 (30%), Positives = 102/217 (47%), Gaps = 8/217 (3%) Query: 347 NQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIP-EDNATAQSIMADF 405 +Q + + + ER IA E+HD+LAQ LS +++ L R + ED AQ + Sbjct: 198 SQLVESERTAGMTAERQRIAHEIHDTLAQGLSSIQMLLHAADRDLDQEDIPKAQERIELA 257 Query: 406 SQALNDAYRQLRELLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDA 464 + D + R ++ + L + L +A+ M D +++D T L Sbjct: 258 RRTAADNLHEARAMIAALQPAALSETSLGAAMTRMADNFAATGGVDVSVDVEGDTQQLPM 317 Query: 465 QMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPK-----EP 519 +++ LL+I + A+ N +KHA+AS+ V+ APD V + DNG G Sbjct: 318 KVEAALLRIAQGAMGNVVKHAHASKARVTVTYAPD-EVRVDVVDNGQGFDVSAVENKPAG 376 Query: 520 EGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFR 556 GH GL+ MR RAE LGG + G GT VS+S Sbjct: 377 LGHIGLSAMRRRAEELGGEVVIESTPGSGTAVSVSVP 413 >UniRef50_Q8ERY5 Two-component sensor histidine kinase n=1 Tax=Oceanobacillus iheyensis RepID=Q8ERY5_OCEIH Length = 356 Score = 207 bits (528), Expect = 7e-52, Method: Composition-based stats. Identities = 64/241 (26%), Positives = 114/241 (47%), Gaps = 5/241 (2%) Query: 322 QNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLR 381 NS + L + V S+ ++ K + ++EER IAR+LHD+++Q L L Sbjct: 112 SNSLNELGKKLQDQVKSLQKMADEKSELAKSAHKTAVIEERQRIARDLHDAVSQELFALA 171 Query: 382 IQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLT-LQQADLPSALREML 440 + + + A++ M + SQ+ + A ++R LL R L L L +++ Sbjct: 172 MLSEAAIKQLDLKPELAKAQMLEVSQSAHQAQTEMRALLLHLRPVYLSGESLIEGLHKLI 231 Query: 441 DTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDG 500 + L+ +++ + TL L + ++ H+ +I+ E++ N ++HANA+E+ V + Sbjct: 232 NELKQKSNLQFTLKFD-DQLEMQETIEEHIFRIVPESLSNILRHANATEVYVEISKKSEE 290 Query: 501 NHTVYIRDNGIGIGE--PKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSA 558 + I DNG G + YGL M+ER+E +GGT T GT + I Sbjct: 291 IFIL-IEDNGEGFDMTGTSGKKTSYGLKTMKERSEEIGGTFTVRSNVDEGTYIQIRIPYE 349 Query: 559 E 559 E Sbjct: 350 E 350 >UniRef50_C1ACX8 Two-component histidine kinase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1ACX8_GEMAT Length = 758 Score = 207 bits (528), Expect = 7e-52, Method: Composition-based stats. Identities = 67/205 (32%), Positives = 102/205 (49%), Gaps = 6/205 (2%) Query: 361 ERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELL 420 ER+ IARELHD+L Q + + +QL ++ I + A A + + A R+ R ++ Sbjct: 549 ERSRIARELHDTLLQGFTGITLQLQAVQGQIQQSPAQASDSLERILTQADGALREARTMV 608 Query: 421 TTFR-LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVL 479 R L + DL AL + + N + L + T + ++ LL+I REAV Sbjct: 609 WDIRAPELGERDLAGALEAAVRSTINAETIALQFTVQGLTQRMAPSIESTLLRIGREAVA 668 Query: 480 NAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIG----EPKEPEGHYGLNIMRERAERL 535 NA+KH+ AS I V + P ++ + DNG G+ EP G +G+ MRERAE++ Sbjct: 669 NAVKHSGASVIRVQLIFGP-REISLTVEDNGCGMDTVIPEPTSEGGRWGVRGMRERAEQI 727 Query: 536 GGTLTFSQPSGGGTLVSISFRSAEG 560 GG L+ G GT VS+ G Sbjct: 728 GGALSIDSTKGHGTSVSVLVPLPVG 752 >UniRef50_A9WAP8 ATP-binding region ATPase domain protein n=3 Tax=Chloroflexus RepID=A9WAP8_CHLAA Length = 491 Score = 207 bits (528), Expect = 8e-52, Method: Composition-based stats. Identities = 62/247 (25%), Positives = 99/247 (40%), Gaps = 13/247 (5%) Query: 320 HWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQ-------LLLMEERATIARELHDS 372 W N + N++S L + ++H + EER IARELHDS Sbjct: 233 RWANDEIGQLTDAFNAMSEALAQAERERAEREHLRAQYVTQIITAQEEERKRIARELHDS 292 Query: 373 LAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLT-LQQAD 431 +Q L+ L + L L + + D + L L R + L Sbjct: 293 TSQALTSLLVGLRSLADR--HRSPEIAQQVDDLRSIVGQILNDLHALARQLRPSVLDDLG 350 Query: 432 LPSALREMLDTLQNQTSAKLTLDCRL-PTLALDAQMQVHLLQIIREAVLNAMKHANASEI 490 L +AL+ + + ++ + L LD ++ L +I++E + N ++HA+AS Sbjct: 351 LAAALQRYVAECRARSGLIIDLALPGLDDFRLDPVVETALYRIVQEGLTNIIRHAHASTA 410 Query: 491 AVSCVTAPDGNHTVYIRDNGIGIGE-PKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGT 549 +V D + I D+G G +GH GLN +RERA L G L G GT Sbjct: 411 SVVIERRADRVRAI-IEDDGCGFDPNALHGDGHLGLNGIRERAALLNGQLIIESSPGSGT 469 Query: 550 LVSISFR 556 + + Sbjct: 470 TLYVEIP 476 Score = 44.9 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 36/208 (17%), Positives = 75/208 (36%), Gaps = 19/208 (9%) Query: 144 ERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTN 203 E+ + V L I + + + P+ QLV ++ + G F Sbjct: 176 EQTVAAVTGQLLITTIMAAAIGITAAAFLTWLLTRPILQLVALTKAVALGDFSQRAR-RW 234 Query: 204 LPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQID 263 +E+G L FN MS L + R + L Y +Q + + + Sbjct: 235 ANDEIGQLTDAFNAMSEALAQAERE------------RAEREHLRAQY-VTQIITAQEEE 281 Query: 264 VHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQILPVT-MQETVYGELHWQ 322 + I + + D+ + L VG +++ +PE+ Q+ + + + +LH Sbjct: 282 R---KRIARELHDSTSQALTSLLVG-LRSLADRHRSPEIAQQVDDLRSIVGQILNDLHAL 337 Query: 323 NSHVSSSEPLLNSVSSMLGRGLYFNQAQ 350 + S +++ L R + +A+ Sbjct: 338 ARQLRPSVLDDLGLAAALQRYVAECRAR 365 >UniRef50_B4CV46 Integral membrane sensor signal transduction histidine kinase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CV46_9BACT Length = 692 Score = 207 bits (528), Expect = 8e-52, Method: Composition-based stats. Identities = 59/231 (25%), Positives = 96/231 (41%), Gaps = 6/231 (2%) Query: 331 PLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRS 390 + + ++H +Q L EER IARE HD+ Q L L + L + Sbjct: 459 AFIWIFALRRRVAAQTETIREHIEQQTLQEERMRIAREFHDTFEQHLVGLGLMLETAQAE 518 Query: 391 IPEDNATAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSA 449 I D A+ ++ + ++ + R + R L D+ S + + L + Sbjct: 519 IA-DPQRARELLREAAEMTRHTRAEARHAIWELRTGALASVDVVSLIHDELSSSAQAARL 577 Query: 450 KLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDN 509 L ++ L A +Q HLL+I++E+ NA+KHA A + V + + + DN Sbjct: 578 HLRVEVEGNRRPLPAVVQNHLLRIVQESFTNALKHARAECVTVHLGFGVE-EICLRVVDN 636 Query: 510 GIGIGEPKEPE---GHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRS 557 G G G +GL MRERA R+ G + G GT V + + Sbjct: 637 GAGFDPDAVTPHDGGGFGLAGMRERALRMKGNFAIASAPGRGTEVQVRIPA 687 >UniRef50_Q13H12 PAS/PAC sensor signal transduction histidine kinase n=5 Tax=Burkholderia RepID=Q13H12_BURXL Length = 384 Score = 207 bits (528), Expect = 8e-52, Method: Composition-based stats. Identities = 61/228 (26%), Positives = 97/228 (42%), Gaps = 8/228 (3%) Query: 342 RGLYFNQAQKHFQ--QLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQ 399 R F Q ++ Q EE+ IARELHD L Q L+ L++ L L+ + ++ A A Sbjct: 141 RLAEFEQLRRLATHIQATREEEQIRIARELHDDLGQQLAALKMALADLETILRDNGAIAA 200 Query: 400 ---SIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDC 455 + D ++ LR + R L+ L AL ++ + + Sbjct: 201 LTLTHTKDMHHLIDVTVASLRRIAAGLRPIVLETLGLVPALEWLIGDFTQRYHIDVNARI 260 Query: 456 RLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGE 515 + + + L II+EA+ N +HA+A E+ V + + DNG G+ Sbjct: 261 QTDDMNVSEAASEALFHIIQEALTNVARHAHADEVTVELARGG-RTCVLRVEDNGQGMAS 319 Query: 516 PKEP-EGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEE 562 P E +GL MRER RL G+L+ G G ++I+F E Sbjct: 320 ATLPRETSFGLLGMRERVHRLNGSLSIDSTPGCGFRIAITFPLETLER 367 >UniRef50_Q97F15 Membrane-associated sensory histidine kinase-like ATPase n=1 Tax=Clostridium acetobutylicum RepID=Q97F15_CLOAB Length = 402 Score = 207 bits (527), Expect = 9e-52, Method: Composition-based stats. Identities = 55/238 (23%), Positives = 109/238 (45%), Gaps = 5/238 (2%) Query: 330 EPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKR 389 + L S + G + + ++L ++ ER I+RE+HDS+ LS + +QL L Sbjct: 167 DRLRESEEKLRGAYEKLERYSETVEELSILRERNRISREIHDSVGHTLSAVLMQLQALLY 226 Query: 390 SIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLT-LQQADLPSALREMLDTLQNQTS 448 I D + + + + + +R + + T + + A+ EM+ + TS Sbjct: 227 LIKSDKEESLKTVEEMTGFVRGGIENVRRTVRELKPTDFDRFEGVFAIEEMIRKYKKLTS 286 Query: 449 AKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRD 508 A + +L + ++++EA+ NA++H AS + VS D + I+D Sbjct: 287 ADIRFILSKEKRSLSSDESFISYRVVQEALNNAIRHGKASLVEVSMQFNQD-RLYIRIKD 345 Query: 509 NGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEESQLM 566 NG+G K+ +G+ M ER ++LGG + F G V+++ + E++ ++ Sbjct: 346 NGVGTDGIKK---GFGMTGMEERVKKLGGNIEFYSERDKGFEVTVNLPKSSEEKNSII 400 >UniRef50_A4XZI6 Multi-sensor signal transduction histidine kinase n=17 Tax=Pseudomonas RepID=A4XZI6_PSEMY Length = 801 Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 63/284 (22%), Positives = 113/284 (39%), Gaps = 4/284 (1%) Query: 277 NEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSV 336 N LE W+ E+ + T + G + W +E L + Sbjct: 517 NSQTLALEGESDWYWQGRILTAEQEVLWADIRTTARPLGGGRVVWDGILWDITENKLAEL 576 Query: 337 SSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNA 396 + R + H + + EE+A IARE+HD L QVL+ L+++ + + + Sbjct: 577 ALADSRA-RLRELSAHL-ESVREEEKARIAREVHDELGQVLTVLKLETAMCELACAGQVP 634 Query: 397 TAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCR 456 +A + + ++ +R++ T R + A + SA+ + + +T ++ Sbjct: 635 ELDERLASMKRLIAQLFQLVRDVATALRPPILDAGIASAIEWQVRRFEERTQIPCLVEVP 694 Query: 457 LPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEP 516 L + L +I++EA+ N M+HA A + V +G + + D+G G Sbjct: 695 EHLPRLPDAQAIGLFRILQEALTNVMRHAGAHSVVVRLW-QEEGGLCLSVSDDGKGFDAA 753 Query: 517 KEPEG-HYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAE 559 G +GL M+ER LGG L G GT + E Sbjct: 754 MRKPGQSFGLVGMQERMLMLGGQLQIDSRPGEGTTLYARITLDE 797 >UniRef50_D2B2V1 Histidine kinase n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2B2V1_STRRD Length = 687 Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 76/342 (22%), Positives = 129/342 (37%), Gaps = 31/342 (9%) Query: 231 ASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGEN 290 V ++ + RL L + +Q ++ ++R A + + V Sbjct: 362 QRVVDRMFAVERDPYRLADL--LGRTGQGAQDPAAALGEVVAVIRGALGATGVGVEVRTG 419 Query: 291 WRISEG-QPNPELPM--QILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFN 347 W + EL + Q +P+ G L + L ++ L Sbjct: 420 WGGPARVFRDGELRLGTQEVPLLWHAERVGTLLVAGAWPGREP--LAVLARHLA---ELA 474 Query: 348 QAQKHFQQLLLMEER---------ATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATA 398 A + L ER + RELHD L L+ + + L +R + D Sbjct: 475 HAVRLTADLHRSRERIRTTRDEERRRLGRELHDGLGPALTSVTLTLDEARRRLDTDPRAV 534 Query: 399 QSIMADFSQALNDAYRQLRELLTTFR-LTLQQADLPSALREMLDTLQNQTSAKLTLDCRL 457 + ++ + + +REL+ R L L ALR +T+D L Sbjct: 535 EKLLVRVREEMTATIASVRELVYGLRPPALDDLGLEGALRASAGETA------VTVDGAL 588 Query: 458 PTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPK 517 L A ++V +I +EA+ NA +HA + + + P G V + D+G+G+ P+ Sbjct: 589 DD--LPAAVEVAAYRIAQEALTNARRHAGPATVLIRLRRLP-GELRVEVADDGVGL--PE 643 Query: 518 EPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAE 559 P GL MRERA +GG+ + GGGT V+ + E Sbjct: 644 SPAAGVGLTSMRERAAEVGGSCVIGRRPGGGTEVTARLPTEE 685 >UniRef50_A6GSY8 Sensory transduction histidine kinase n=1 Tax=Limnobacter sp. MED105 RepID=A6GSY8_9BURK Length = 512 Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 64/243 (26%), Positives = 108/243 (44%), Gaps = 11/243 (4%) Query: 317 GELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQV 376 G L + + E L N+ + + F + ++ ER IARE+HD + Sbjct: 271 GVLLDISDRKQAEERLQNAQTELRLVTTEFEKRREQ--------ERGAIAREIHDDMGGS 322 Query: 377 LSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSAL 436 L+ L+ + L +++ D+A Q + D + + + + R + L AL Sbjct: 323 LTKLKADVAWLNKNLTADSA-IQEKLDDMLELIEHLLASSQRIAKDLRPGILDYGLIPAL 381 Query: 437 REMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVT 496 ++ Q +T + T C + L LD++ L +I++EA+ N +KHA A+ + V Sbjct: 382 EWQMNDFQKRTQIEGTFQCNVEELDLDSEQSTALFRILQEALTNIVKHAQATRVDVELFV 441 Query: 497 APDGNHTVYIRDNGIGI-GEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 + T+ IRDNG GI K E +GL M+ER G + S G GT V +S Sbjct: 442 T-ESELTLEIRDNGRGIENTDKLKETSFGLRGMQERVAAFEGWVDVSGSLGSGTTVMVSI 500 Query: 556 RSA 558 + Sbjct: 501 PRS 503 >UniRef50_C4XMF3 Two-component sensor histidine kinase n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XMF3_DESMR Length = 704 Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 88/429 (20%), Positives = 158/429 (36%), Gaps = 36/429 (8%) Query: 154 SLAGGIGIFTLVF--FTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLL 211 ++ G + ++F L + +++ + L ++ G +E+ L Sbjct: 275 AMVGSLTTIGIMFGLAMLYFVERFILSRVTGLGQEIAQLGQGS-RKRVTPLAGNDEVSAL 333 Query: 212 AKTFNQMSSEL--HKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRH 269 ++ N M EL + + + E+ Q L + Sbjct: 334 SRAVNLMLDELDAARAHYVMATRAA--------KVGVWEL--QPDAGLIVVDPVIAGLLG 383 Query: 270 ILQIVRDNEAAEYLELNVGENW--RISEGQPNPELPMQILPVTMQETVYGELHW--QNSH 325 + A +L+ E+ + GQ + P + + G L + + Sbjct: 384 YDSPGQPEALALWLDRLAPEDRDSLVRPGQHLFDKPTFERELRVVAAQGGVLCFLCRGQF 443 Query: 326 VSSSEPLLNSVSSMLGRGLYFNQAQKHFQQL------LLMEERATIARELHDSLAQVLSY 379 V ++ + + + QA + + L ERA+IAR+LHD++AQ LS Sbjct: 444 VPGADGSPSRLVATAVDITELKQAAESIRALSGRLMQAQESERASIARDLHDNVAQDLSS 503 Query: 380 LRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLT-LQQADLPSALRE 438 L+I L + + +A + + S L +REL R L+ L ALR Sbjct: 504 LKIAYETLLDGLADVDAALRQRLEAASGLLARTIASVRELAYGLRPPNLEHLGLDQALRR 563 Query: 439 MLDTLQNQTSAKLTLD-CRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTA 497 + + + ++ L L +DA + ++L +I +EA+ N KHA AS + + + + Sbjct: 564 LSQEMGQASGLAVSYAGVGLEGLDVDADVAINLFRIAQEALANVRKHAGASRVEMRLIES 623 Query: 498 PDGNHTVYIRDNGIGIG--------EPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGT 549 + IRD+G G + GL MRERA GG+L G GT Sbjct: 624 Y-PKLILRIRDDGRGFDAVREHGDCPGEASRPCMGLINMRERAGLFGGSLRVISSPGHGT 682 Query: 550 LVSISFRSA 558 V A Sbjct: 683 TVVAEVPYA 691 >UniRef50_UPI00017468E2 histidine kinase n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017468E2 Length = 698 Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 66/222 (29%), Positives = 106/222 (47%), Gaps = 6/222 (2%) Query: 340 LGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQ 399 L Q QQ ++EER IARE HD+L Q L+ L ++L + +D A+ Sbjct: 473 LQVNRQLGLLQLKTQQEAVLEERQRIAREFHDTLEQELAGLSLRLDAATPRVADD--KAR 530 Query: 400 SIMADFSQALNDAYRQLRELLTTFR-LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLP 458 ++ + L+ + R+ + R + + LP AL+ ++D LQ T+ + ++ Sbjct: 531 QLLEQQRKLLSRLQTETRDFVWDLRDASRNEVPLPEALQGLVDHLQTTTAIPIQVEVHGE 590 Query: 459 TLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPK- 517 L +Q HLL+I REAV NA+K+A ++ V T + + D+G G K Sbjct: 591 IPPLPPLVQHHLLRIAREAVNNALKYALPQKVIVKVET-DAQVLRLTVADDGKGFDPSKM 649 Query: 518 -EPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSA 558 GH+GL MRER+ +L L+ GGGT V ++ Sbjct: 650 SVSGGHFGLQGMRERSRKLHTELSLQSTPGGGTSVGLTLALP 691 >UniRef50_B3U4S0 Response regulator receiver n=1 Tax=Candidatus Nitrospira defluvii RepID=B3U4S0_9BACT Length = 998 Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 64/217 (29%), Positives = 104/217 (47%), Gaps = 5/217 (2%) Query: 344 LYFNQAQKHFQQL--LLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSI 401 L +Q +K +L + EER IARE+HD L Q L+ ++++L LL I E + + Sbjct: 779 LSHDQLRKLTARLESVREEERILIAREIHDELGQALTGVKLELCLLHDQIAEVSPMMRKK 838 Query: 402 MADFSQALNDAYRQLRELLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLTLDCRLPTL 460 + S ++ + ++ + T R L Q L A+ Q +T + TLD L + Sbjct: 839 LESISTLVDGTIQSVQRIATELRPVVLDQLGLIPAIEWQAHEFQARTGIQCTLDVYLRAV 898 Query: 461 ALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPE 520 L + +I +E + N +HA AS + ++ G+ + +RDNG G+ + + + Sbjct: 899 TLSHAGSTAMFRIFQEILTNVARHAQASVVHITL-QEQAGSLVLDVRDNGRGVTDAELAD 957 Query: 521 GH-YGLNIMRERAERLGGTLTFSQPSGGGTLVSISFR 556 H GL MRERA LGG F+ G GT V + Sbjct: 958 PHSLGLVGMRERALLLGGETIFTGSPGTGTAVRVRIP 994 >UniRef50_C2C0V0 Possible histidine kinase n=5 Tax=Listeria RepID=C2C0V0_LISGR Length = 358 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 58/217 (26%), Positives = 103/217 (47%), Gaps = 5/217 (2%) Query: 342 RGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATA-QS 400 + + ++ +L+EER IARELHDS++Q L + L+ L ++ A Q Sbjct: 129 IASGYAETAGQSKEAILVEERHRIARELHDSVSQQLFAAMMLLSALNEQGEKNATPAMQK 188 Query: 401 IMADFSQALNDAYRQLRELLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLTLDCRLPT 459 + +ND+ ++R LL R T L+ L + ++L L + + + + Sbjct: 189 QLKLVESIVNDSQSEMRALLLHLRPTQLEGKSLKVGMEQLLQELTAK--IPIEVRWEIAD 246 Query: 460 LALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEP 519 +AL ++ HL +I++E + N ++H+ A+ + V D + + D+G+G + Sbjct: 247 IALKKGIEDHLFRIVQELLSNTLRHSKAALLEVRLAIV-DQVAILKVVDDGVGFNVGEVA 305 Query: 520 EGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFR 556 +G YGL MRER E GGT+ GT V + Sbjct: 306 QGSYGLQNMRERVEEFGGTIKIISFPNQGTSVEVKIP 342 >UniRef50_Q1AVR5 Periplasmic sensor signal transduction histidine kinase n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AVR5_RUBXD Length = 407 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 47/247 (19%), Positives = 103/247 (41%), Gaps = 4/247 (1%) Query: 315 VYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLA 374 V G + ++ + + + ++L + EER IARE+HD++ Sbjct: 163 VIGICTLAVESMRRQAHAQELLAELEEAHAELRRYAERARELAVSEERNRIAREIHDAVG 222 Query: 375 QVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTF-RLTLQQADLP 433 L+ + +QL + + D A +A + ++A + R + +++ Sbjct: 223 HHLTVVNVQLEAAGKLLARDPGRAAEAVARAKSSASEALSEARRAVRALKPPSMEGRAGL 282 Query: 434 SALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVS 493 AL +++ + + ++ + L +++ L + ++E + NA++H+ A + V Sbjct: 283 RALDDLVREF-HGSGVAVSFEVSGERRPLPPEVEFILYRALQEGLTNALRHSGADRVEVR 341 Query: 494 CVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSI 553 + + +RD+G G E G +GL +RER GG ++ GGG + + Sbjct: 342 LDLCGEA-VRLSVRDDGRGTSEGASG-GGFGLEGLRERVAEAGGRISAGDARGGGFALEV 399 Query: 554 SFRSAEG 560 + G Sbjct: 400 ELPAGAG 406 >UniRef50_C5CVV4 Histidine kinase n=2 Tax=Burkholderiales RepID=C5CVV4_VARPS Length = 456 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 72/287 (25%), Positives = 117/287 (40%), Gaps = 14/287 (4%) Query: 290 NWRISEGQ--PNPELPMQILPVTMQETVYGELHWQNS------HVSSSEPLLNSVSSMLG 341 NW + G + E MQ L M V L W V S+ LL ++S Sbjct: 171 NWMVGTGLYLDDIETTMQALDRQMSANVTTTLLWIAGIAALCLGVVSATGLLLNLSEHRT 230 Query: 342 RGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSI 401 + Q EER +ARELHD +Q L ++ + ++ + A Sbjct: 231 AEAKLRLLARRVVQ-SQEEERGHLARELHDGTSQTLVSAKLLIESAVDALDRERQPAPPA 289 Query: 402 MADFSQALNDAYRQLRELLTTFRLTL-QQADLPSALREMLDTLQNQTSAKLTLDCRLPTL 460 ++ Q LND+ ++R + R L LP+AL + D + + ++ Sbjct: 290 LSKALQRLNDSLIEVRRISHRLRPALLDTLGLPAALERLGDEFAEEGAIDASIMIEGEAF 349 Query: 461 ALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPK--- 517 L + + L ++ +EA+ N KHA A + ++ + + + I D+G+G Sbjct: 350 ELSQEAKTALFRVTQEALTNVRKHAQAHRVHIALGFSDEDGVRLSIGDDGVGFDVEAMQL 409 Query: 518 EPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLV-SISFRSAEGEES 563 + GL MRER E +GG L GG T+V + RSA E + Sbjct: 410 DARRGIGLRNMRERMESIGGRLDVQSGEGGTTIVAEVPARSARPEPA 456 >UniRef50_B1ZSZ0 Histidine kinase n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZSZ0_OPITP Length = 1031 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 64/262 (24%), Positives = 115/262 (43%), Gaps = 9/262 (3%) Query: 304 MQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLY--FNQAQKHFQQLLLMEE 361 + P+ + ++G + + + L + + L Q Q+ + + E Sbjct: 769 LASYPILLAALLFGLVRFAMRRAEARNAALEQLVAQRTGELQTTMRQLQQETRTSATLAE 828 Query: 362 RATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLT 421 R +A E+HDSL Q + L +QL + + +S +A + + ++R + Sbjct: 829 RNRLAGEIHDSLEQGFTGLTLQLETTA-AFSTCSPEVKSGLAVALNMVAFSRNEVRHAVR 887 Query: 422 TFR-LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLN 480 L ADL +ALR++L + L + L + ++ HLL+I +EA+ N Sbjct: 888 DMHSPILASADLETALRQILAQVAPHADYA-RLRIEGSPVRLGSSVEHHLLRIAQEAIAN 946 Query: 481 AMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPK---EPEGHYGLNIMRERAERLGG 537 A+KHA AS +AV+ + IRD+G G GH+GL R RA ++GG Sbjct: 947 AVKHAAASHLAVTLAFRK-SEVELDIRDDGRGFDPAAVLNAGIGHFGLPSFRGRANKIGG 1005 Query: 538 TLTFSQPSGGGTLVSISFRSAE 559 T+ + G GT +++ + Sbjct: 1006 TVEITSRPGAGTRITVRVPVEK 1027 >UniRef50_B2J8K5 Integral membrane sensor signal transduction histidine kinase n=6 Tax=Cyanobacteria RepID=B2J8K5_NOSP7 Length = 421 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 53/218 (24%), Positives = 102/218 (46%), Gaps = 7/218 (3%) Query: 343 GLYFNQAQKHFQQL---LLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQ 399 + + +++ ++ +EER IARE+HDSL L+ L +QL + + A+ Sbjct: 202 AIANEKLREYAMRIENQATLEERNRIAREIHDSLGHSLTALNLQLETALKLWQSNPGKAE 261 Query: 400 SIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLP 458 + +A + + A +R+ ++T R LQ+ L A+ + + L Sbjct: 262 TFLATAKELGSKALNDVRQSVSTMRSNPLQEQSLERAIANLAENFHRSNGILPICQINLE 321 Query: 459 TLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKE 518 +L ++ + +I +E++ N K+A A+E+ + T GN + I+DNG G + Sbjct: 322 -YSLPPEINTAIYRITQESLTNITKYAYATEVKLELATIR-GNLRLIIQDNGRGFDLGQN 379 Query: 519 PEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFR 556 G +GL+ MR+R LGG + G G ++++ Sbjct: 380 TTG-FGLHSMRDRTLALGGDFNINSTPGSGCKITVNIP 416 >UniRef50_A7NG30 Multi-sensor signal transduction histidine kinase n=1 Tax=Roseiflexus castenholzii DSM 13941 RepID=A7NG30_ROSCS Length = 591 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 85/380 (22%), Positives = 139/380 (36%), Gaps = 49/380 (12%) Query: 226 YRSLEASVEEKTRDLHEAKRRLEVL------------YQCSQALNTSQIDVHCFRHILQI 273 YR ++ E L VL Y C L ++ F + Sbjct: 214 YRDQTRALYEAAYTLATTNDYQNVLEVTLDESQKLAPYTCGMVLLSTGQTNQLFVASSRG 273 Query: 274 VRDNEAAEYLELNVGENWRISEG---------QPNPEL----------PMQILPVTMQET 314 + N+ + + G R G + +PEL +LP+ Sbjct: 274 LDPNDQERIVTIGPGAIGRTIRGSDPVVLDNFRDDPELMAFTSLHRHRTACLLPLRFGLN 333 Query: 315 VYGELHWQNSHVS----SSEPLLNSVSSMLGRGLYFNQ-----AQKHFQQLLLMEE-RAT 364 YG + + + H L +++S L Q Q+ + L EE R Sbjct: 334 TYGVMVFASDHERAFGHEEVEKLAALASYALVALQNAQLIYDLQQERTKLLSKEEEVRHQ 393 Query: 365 IARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFR 424 +AR+LHD AQ L+ + + + +KR + D A + Q +R +L R Sbjct: 394 LARDLHDGPAQALAAITMNVEFIKRLLERDPARVLPELDKLGQLAKRTTHDVRTMLFELR 453 Query: 425 L-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMK 483 L+ L L++ + ++ K+ L+ LD +++ L I++EAV NA+K Sbjct: 454 PLALETQGLDVTLQQYFERFRDN-PTKIILEADTIDAQLDTKVEGTLFNIVQEAVNNALK 512 Query: 484 HANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPK-----EPEGHYGLNIMRERAERLGGT 538 HA A I V P T+ I D+G G K + G +GL + ERA +GG Sbjct: 513 HAKAQHIWVRLRQTPTTLETI-IEDDGRGFDVEKVRASYDQRGSFGLLNIEERASLMGGV 571 Query: 539 LTFSQPSGGGTLVSISFRSA 558 + G GT + Sbjct: 572 AEVTSTPGKGTTWKVIVPLQ 591 >UniRef50_A9B5L1 Integral membrane sensor signal transduction histidine kinase n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B5L1_HERA2 Length = 581 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 77/370 (20%), Positives = 146/370 (39%), Gaps = 36/370 (9%) Query: 219 SSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNE 278 + +L +L LE V+ +T +L + R E LY S AL I + Sbjct: 204 AQDLEQLRSQLEQRVQAQTAELAQRTHRAEALYNISSALALPADITQILPLIAEQAHQLL 263 Query: 279 AAEYLELNVGENWR-----------------------ISEGQPNPELPMQILPVTMQETV 315 +Y + + +S E +LP ++ Sbjct: 264 HVDYSWIMLNHQCLAAYPEAAVHEPHLQFEPTQNTSVMSISSKFGEHTALVLPFQLENDQ 323 Query: 316 YGELHWQNSHV---SSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDS 372 + + + L + L + + ++EER +AR++HD+ Sbjct: 324 VQLILAGAAIAQTNTDDRALAEGLRDQAVLALNNQRLLAQVRDKAMLEERTRLARDIHDT 383 Query: 373 LAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQA-D 431 LAQ L+ + IQL +R++ + + + +A S+ +A + R + R L A Sbjct: 384 LAQGLTGIVIQLGATQRALVYSPSESSTHLALASRMAREALAEARASVWNLRAPLLDANS 443 Query: 432 LPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIA 491 L A++E+ ++ ++ + L LD + LL+I +EA+ N +KH+ A ++ Sbjct: 444 LTKAIQELAAH-PMRSDLQVDVQIHGQVLRLDLHDETALLRITQEALANVVKHSKAEHVS 502 Query: 492 VSCVTAPDGNHTVYIRDNGIGIGEP-----KEPEGHYGLNIMRERAERLGGTLTFSQPSG 546 + + + + + I DNG G + + H+GL +RER ++GG+L S Sbjct: 503 IQLIYG-NSSVELLIHDNGTGFDQAILTNQMQMTNHFGLIGIRERVAQIGGSLQLSNQ-- 559 Query: 547 GGTLVSISFR 556 G LV + Sbjct: 560 HGALVHVQIP 569 >UniRef50_Q0S8Z4 Sensor kinase, two-component system n=2 Tax=Rhodococcus RepID=Q0S8Z4_RHOSR Length = 647 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 73/316 (23%), Positives = 126/316 (39%), Gaps = 18/316 (5%) Query: 252 QCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQILPVTM 311 + +++ + V E + + G + + + Sbjct: 335 TLGRQFGSAETPEQLLEGLAAGVGVALRLESVSVRRTSGVAAVWGSATGH--AESVELVH 392 Query: 312 QETVYGELHWQNSHVSS----SEPLLNSVSSMLGRGLYFNQAQKHFQQL------LLMEE 361 + V G + S + L +S+++ GL Q+ ++ Q+ + +EE Sbjct: 393 RGAVLGTMVVTAPPGESLGARTRRSLTELSAVVTAGLVVLQSAENLQEARRRLASVRLEE 452 Query: 362 RATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLT 421 R TI RELHD L L+ +R+ L + + D A ++ + L+ +R+L Sbjct: 453 RQTIRRELHDGLGPSLAGIRLGLQGARNLLGSDPVAAAELIDALQEQLDHQVEGVRQLSR 512 Query: 422 T-FRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLN 480 + F L + L AL E+ Q+++ +L + P L A++ + I+ EAV N Sbjct: 513 SMFPPVLDELGLVPALHELAAN-QSRSGFQLRVQAD-PPPRLGAEISAAVYGIVVEAVTN 570 Query: 481 AMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLT 540 A +H+ A V A + TV I D+G G + G G MRERA LGGTL Sbjct: 571 ARRHSGADGCRVDATFARE-MLTVVIHDDGCGFDPAR--GGGVGTRSMRERAHELGGTLH 627 Query: 541 FSQPSGGGTLVSISFR 556 GT+V+ Sbjct: 628 IESGRPTGTVVTARLP 643 >UniRef50_C1A5E7 Two-component histidine kinase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A5E7_GEMAT Length = 558 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 59/249 (23%), Positives = 105/249 (42%), Gaps = 16/249 (6%) Query: 322 QNSHVSSSEPLLNSVSSMLGRGLYFNQA-------QKHFQQL------LLMEERATIARE 368 + + L +++ + ++ +QL + EER IARE Sbjct: 310 RAPFTWNDASFLEALADTTAMAIENSRLVTALASKNAEVRQLFALHADRIEEERQHIARE 369 Query: 369 LHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRL-TL 427 LHD Q L +++ L +L R +P D ++ + + +N A + R+L R L Sbjct: 370 LHDEAGQALVGVKLALQVLSRVLPSDTPHVRAPLDELRLQVNQATARFRQLARRLRPPAL 429 Query: 428 QQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANA 487 Q L +AL +++ + + + L+ + + +I++EA+ N HA A Sbjct: 430 DQHGLAAALAQLVHDTEQRGGFAVHLEVDGLDQRRFPLHETAVFRIVQEALTNVTAHAGA 489 Query: 488 SEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGG 547 +E+ VS V + D+G G + G GL + ERA +LGG + G Sbjct: 490 TEVRVSVGETAQ-RLLVRVSDDGCGFDITRSQSG-LGLRGIAERAHQLGGLCDVASQPGT 547 Query: 548 GTLVSISFR 556 GT+VS+ Sbjct: 548 GTVVSVQLP 556 >UniRef50_UPI0001C312DE integral membrane sensor signal transduction histidine kinase n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C312DE Length = 468 Score = 205 bits (521), Expect = 4e-51, Method: Composition-based stats. Identities = 57/222 (25%), Positives = 98/222 (44%), Gaps = 3/222 (1%) Query: 337 SSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNA 396 +++ Q + + ++EER +ARE+HD+LAQ L+ + + E Sbjct: 199 ATLAENAALQAQLVEQARDAGVVEERQRMAREIHDTLAQGLTGI-VAQIQAAEQAAERPE 257 Query: 397 TAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDC 455 + + +Q ++ + R + R L+ A LP A+ E+ + + + Sbjct: 258 RWRRHLRTAAQLARESLAEARRSVQAVRPEALENARLPEAVAEVARRWSSIQGVGVEVTT 317 Query: 456 RLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGE 515 L +++V LL+ +EA+ N KHA A + V+ D T+ +RD+G+G Sbjct: 318 TGHPRPLPTEVEVTLLRTAQEALANVAKHARAGRVGVTLSYMEDA-VTLDVRDDGVGFAV 376 Query: 516 PKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRS 557 GL MR+R E LGG L GGGT +S S + Sbjct: 377 GAAAGDGVGLVAMRQRVEGLGGRLEIESEPGGGTAISASAPT 418 >UniRef50_C6NZS6 Multi-sensor signal transduction histidine kinase n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6NZS6_9PROT Length = 902 Score = 205 bits (521), Expect = 6e-51, Method: Composition-based stats. Identities = 57/281 (20%), Positives = 112/281 (39%), Gaps = 32/281 (11%) Query: 307 LPVTMQETVYGELHWQNSHV----SSSEPLLNSVSSMLGRGLYFNQAQKHFQ-------- 354 +P+ + G L ++ LL ++ L G+ + + Q Sbjct: 616 IPLVINGKAIGALTINSADPFTFSKGEVVLLEDLADNLSYGIQTLRTRNEHQSALTFLQK 675 Query: 355 -QLLLMEERAT------------------IARELHDSLAQVLSYLRIQLTLLKRSIPEDN 395 +L L + IAR+LHD L Q+L+ LR+ L++++ N Sbjct: 676 SELSLEQSNQQLRDLTIRREEAREDERKRIARDLHDELGQILTVLRMDLSVMRMQFGASN 735 Query: 396 ATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDC 455 + + ++ + +R++ + R +A + +AL + ++ L Sbjct: 736 PALLDQIKNILSRVDSTIQVVRDVASKLRPGALEAGIVAALEWQVAEFAKRSDIHFDLKI 795 Query: 456 RLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGE 515 + LD + + +I++E++ N +HA A+ + VS D N+ + I D+G G Sbjct: 796 DESNIDLDDERATAIFRIVQESLTNVTRHAAAANVCVSLSRLQD-NYILEIIDDGRGFDT 854 Query: 516 PKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFR 556 +GL +RER+ L GT+ G GT V++ Sbjct: 855 EMLSGRTFGLMGVRERSMMLEGTVDIRSSPGKGTHVTVYIP 895 Score = 44.1 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 3/77 (3%) Query: 142 YAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLD 201 Y++ + +LV I + + + VF I ++ P++QL ++ I G + Sbjct: 272 YSQLRKMLVRNI--LFSLAMLSFVFGVAWLIARRISNPISQLTAVTRAISQGSRVARAEL 329 Query: 202 TNLPNELGLLAKTFNQM 218 P E+ +A+ FN+M Sbjct: 330 VGPP-EIREVAQEFNEM 345 >UniRef50_Q747N5 Sensory box histidine kinase n=2 Tax=Geobacter RepID=Q747N5_GEOSL Length = 518 Score = 204 bits (520), Expect = 6e-51, Method: Composition-based stats. Identities = 61/234 (26%), Positives = 107/234 (45%), Gaps = 8/234 (3%) Query: 338 SMLGRGLYFNQAQKHFQQL--LLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDN 395 + R +++ Q+L ER ++RELHD L Q+L+ L+I L + + + Sbjct: 263 DITARKEAEQRSRMLSQRLLHAQESERKRLSRELHDDLGQLLNALKIGFDTLAEDLRQPS 322 Query: 396 ATAQSIMADFSQALNDAYRQLRELLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLTLD 454 Q + S++LN++ +R L + L++ L +R+ S + L Sbjct: 323 HDVQDRLWYLSESLNNSIHTIRRLCAGLHPSTLERLGLAETIRQQCTQAATTHSLDIELK 382 Query: 455 C-RLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGI 513 C + + L++ +++L +I +EA+ N +KHA+A+ + V V A + I DNG G Sbjct: 383 CGTMLGVRLESDTEINLYRIFQEALHNVVKHADATRVMVRLV-ASHPTVRLQIEDNGGGF 441 Query: 514 ---GEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEESQ 564 + H GL M ER E LGGT + G GT V++ + + Sbjct: 442 SMEDYAELSGHHLGLISMAERVELLGGTFQIASLPGLGTAVTVEVPFRKAPPGR 495 >UniRef50_B8HNY8 Histidine kinase n=1 Tax=Cyanothece sp. PCC 7425 RepID=B8HNY8_CYAP4 Length = 403 Score = 204 bits (520), Expect = 6e-51, Method: Composition-based stats. Identities = 61/220 (27%), Positives = 100/220 (45%), Gaps = 8/220 (3%) Query: 343 GLYFNQAQK---HFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQ 399 + Q ++ + +EER IARE+HDSL L+ + L+ R +P D A Sbjct: 179 AIAHEQLRRYALRIEDQATLEERNRIAREIHDSLGHHLTVFNLHLSAALRLLPTDPEEAI 238 Query: 400 SIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLP 458 +++ + Q A +++R+ + R LQ L +AL+ ++ + T L L Sbjct: 239 ALLEEVKQLGATALQEVRQSVGQLRTDPLQGNSLETALQTLISEVHKSTGILPKLQVNLQ 298 Query: 459 TLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKE 518 L +QV L +I++E++ N K+A AS I + D + I DNG G + Sbjct: 299 -RTLPRDVQVALYRIVQESLTNICKYAQASAIQICL--TADSELHLTIADNGQGFDLSQN 355 Query: 519 PEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSA 558 G +GL ++ER LGGTLT G G + + Sbjct: 356 TTG-FGLQGLKERVTALGGTLTIHTAPGQGCEIGVHCPLP 394 >UniRef50_B0TH54 Sensor histidine kinase, putative n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TH54_HELMI Length = 382 Score = 204 bits (519), Expect = 7e-51, Method: Composition-based stats. Identities = 66/272 (24%), Positives = 113/272 (41%), Gaps = 18/272 (6%) Query: 310 TMQETVYGELHWQNSHVSSSEPLLNSVSSMLG----------RGLYFNQAQKHFQQLLLM 359 ++ + L V +E L+N V +L + Q ++ ++M Sbjct: 112 AKRDELERRLRHLEGMVQRAEQLMNQVGVVLDFMGGNLKDLHVKMDEAQVRQQAALRIIM 171 Query: 360 E---ERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQL 416 ER +ARE+HD AQ ++ L +Q+ L +R + D + + + L D+ ++L Sbjct: 172 AQDRERFRLAREIHDGPAQGMNSLVLQVELCERLLQTDPGRVRRELQELKGRLRDSLKEL 231 Query: 417 RELLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIR 475 R++L R L L A+R +T + L+ +V + ++I+ Sbjct: 232 RKILYDLRPHGLDDQGLIEAIRRYTADFSERTGLAVETRFFGQACRLERAYEVAIFRMIQ 291 Query: 476 EAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEP---KEPEGHYGLNIMRERA 532 EA+ N KHA A + V+ AP +V +RD+G+G P +GL MRERA Sbjct: 292 EALQNVWKHAGAKRVQVAFEIAPQA-VSVIVRDDGVGFDVADIFARPGDRFGLCGMRERA 350 Query: 533 ERLGGTLTFSQPSGGGTLVSISFRSAEGEESQ 564 E L G G GT + + + Sbjct: 351 ELLDGEWEVLSRPGQGTQIKFRIPLKSENDGE 382 >UniRef50_B4UAL2 Integral membrane sensor signal transduction histidine kinase n=4 Tax=Anaeromyxobacter RepID=B4UAL2_ANASK Length = 662 Score = 204 bits (519), Expect = 8e-51, Method: Composition-based stats. Identities = 56/244 (22%), Positives = 94/244 (38%), Gaps = 10/244 (4%) Query: 321 WQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYL 380 + + L + + + R Q + +ER IARELHD +Q L+ L Sbjct: 403 LEQRVEERTHALNEAYAQLAAREEARAQLLRKLIS-AQEDERKRIARELHDETSQSLAVL 461 Query: 381 RIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLT-LQQADLPSALREM 439 + L + ++ A + + + ++ R + L L SA+R Sbjct: 462 AMGLEAAQDAMRGGKAP---RLEEVKAVAVRTLEDVHRIILDLRPSVLDDLGLLSAIRWY 518 Query: 440 LDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPD 499 + + + L +M+ L +I +EA+ N +HA A+ + V V D Sbjct: 519 AERQLGTRGMSVRCEFGELDRRLPPEMETALFRICQEAMSNIARHAQATAVLVE-VALED 577 Query: 500 GNHTVYIRDNGIGIGEP----KEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 + I D+G G +E +GL +RERAE LGG+ T G GT V + Sbjct: 578 DVFRIDIEDDGRGFDAEAVARREGRRSWGLMGIRERAEILGGSATVESAPGKGTRVEVRI 637 Query: 556 RSAE 559 Sbjct: 638 PVPR 641 Score = 41.4 bits (96), Expect = 0.094, Method: Composition-based stats. Identities = 40/202 (19%), Positives = 73/202 (36%), Gaps = 18/202 (8%) Query: 148 LLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNE 207 +VA LA +GI V P+ L ++RI G+ D D +E Sbjct: 319 WWLVAAGLAAHLGIAA---AFAWGAARSVTRPIGVLTGEAERIAGGELDWSIPDLGT-DE 374 Query: 208 LGLLAKTFNQMSSE-------LHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTS 260 +G L ++ ++M + ++ LE VEE+T L+EA +L + L Sbjct: 375 VGRLGRSLDRMRLALRRLLDDVARVNAELEQRVEERTHALNEAYAQLAAREEARAQLLRK 434 Query: 261 QIDVH------CFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQET 314 I R + + A + L ++ P E + T+++ Sbjct: 435 LISAQEDERKRIARELHDETSQSLAVLAMGLEAAQDAMRGGKAPRLEEVKAVAVRTLEDV 494 Query: 315 VYGELHWQNSHVSSSEPLLNSV 336 L + S + LL+++ Sbjct: 495 HRIILDLRPSVL-DDLGLLSAI 515 >UniRef50_A0R9R9 Possible sensor histidine kinase domain n=36 Tax=Bacillus cereus group RepID=A0R9R9_BACAH Length = 610 Score = 204 bits (519), Expect = 8e-51, Method: Composition-based stats. Identities = 58/263 (22%), Positives = 112/263 (42%), Gaps = 11/263 (4%) Query: 304 MQILPVTMQETVYGELH----WQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLM 359 + P+ + + G L + S+ L + ++ +++ Sbjct: 342 LVYFPLIVNGELVGMFVAVKSRTAGFFPEDVQSLATFSNQLANVVKTRILISEQEKRMIL 401 Query: 360 EERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLREL 419 EER IARE+HD +AQ L+ + QL ++ + Q I+ + L + ++R Sbjct: 402 EERNRIAREIHDGIAQTLAGVIYQLESAQKKYRDKPIDMQQIVEKSIKDLRGSLGEVRYS 461 Query: 420 LTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAV 478 + + QQ L A+ + +L+ + +T R AL + + ++E++ Sbjct: 462 IYALKPYPTQQLGLKQAIASKIKSLKQEYELDITYHERGHARALSFSKERVIFDTLQESL 521 Query: 479 LNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIG-----EPKEPEGHYGLNIMRERAE 533 N +KHA A + V ++ + + ++DNG+G + E HYG+ M E+AE Sbjct: 522 QNIVKHAQADKTDV-LLSYQSEHVLLRVKDNGVGFSLFESMVKTKNEPHYGILHMNEQAE 580 Query: 534 RLGGTLTFSQPSGGGTLVSISFR 556 +LG TL G GT +++ Sbjct: 581 QLGATLQIDSSVGKGTEITLLIP 603 >UniRef50_Q7NNR3 Glr0347 protein n=1 Tax=Gloeobacter violaceus RepID=Q7NNR3_GLOVI Length = 402 Score = 204 bits (519), Expect = 9e-51, Method: Composition-based stats. Identities = 53/197 (26%), Positives = 92/197 (46%), Gaps = 6/197 (3%) Query: 361 ERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELL 420 ERA IAR++HDSL L+ L ++L + + D A+ + Q + +R + Sbjct: 212 ERARIARDIHDSLGHTLTALDVKLEVAQELYCRDPDRARQAVHTAKQLSGQCLQDVRLAV 271 Query: 421 TTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLN 480 R L +AL + + ++ + + + LP L L Q L I++E + N Sbjct: 272 QAMRRP--PLHLDAALEGLAEQVRQNRALAVEVHIDLPQLPL--QTSHQLYCIVQEGLTN 327 Query: 481 AMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLT 540 +HA A+ +++ P + T+ + D+G G P+ G +GL M ER + LGG+L Sbjct: 328 IQRHARAARVSLRACHTPQ-SVTLELWDDGQGFD-PQATHGGFGLRGMHERMQVLGGSLA 385 Query: 541 FSQPSGGGTLVSISFRS 557 + G GT + +S Sbjct: 386 IASAPGRGTRIRLSVPR 402 >UniRef50_Q67QY8 Two-component sensor histidine kinase n=1 Tax=Symbiobacterium thermophilum RepID=Q67QY8_SYMTH Length = 346 Score = 204 bits (519), Expect = 9e-51, Method: Composition-based stats. Identities = 63/273 (23%), Positives = 106/273 (38%), Gaps = 12/273 (4%) Query: 303 PMQILPVTMQETVYGELHWQNSHVSSSEPL--LNSVSS-MLGRGLYFNQAQKHFQQLLLM 359 P+ L T+ G+ + V + ++ +++ ML R QA Sbjct: 75 PLFTLHATLDRVRRGDFSARVPMVPGDPDIARVSEMANLMLDRLAEHRQAVAAQILRAQE 134 Query: 360 EERATIARELHDSLAQVLSYLRIQLTLLKRSI--PEDNATAQSIMADFSQALNDAYRQLR 417 EER IARELHD AQ L+ + + L ++R + + + + R Sbjct: 135 EERKRIARELHDETAQSLTSIVVNLEAIERQAVGSGVDEALCERLHLTKEVAQRTLDETR 194 Query: 418 ELLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIRE 476 L+ R + L L ALR ++ + T L +++ L +I++E Sbjct: 195 RLMMDLRPSVLDDLGLVPALRWFINHRVLPAGLEADFQVSGLTERLPEELETALFRIMQE 254 Query: 477 AVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGE-----PKEPEGHYGLNIMRER 531 A+ N +KHA A + V G T + D+G G + GL M+ER Sbjct: 255 AITNVVKHAKAKTVLVRL-HREHGEITGLVVDDGQGFHVVHTVGQPVRDRGLGLFGMQER 313 Query: 532 AERLGGTLTFSQPSGGGTLVSISFRSAEGEESQ 564 A +GG + G GT V ++ G + + Sbjct: 314 AALVGGKVVVESAPGRGTTVRVTVPDRRGGDVR 346 >UniRef50_C6CVS1 Histidine kinase n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CVS1_PAESJ Length = 338 Score = 204 bits (519), Expect = 9e-51, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 99/206 (48%), Gaps = 3/206 (1%) Query: 357 LLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQL 416 ++EER +ARELHD+++Q L + + T + R+I D A+ + + + A ++ Sbjct: 132 AVIEERQRLARELHDAVSQQLFAISMTATAVSRTIERDWERAKRQVQLIEEMASVAQSEM 191 Query: 417 RELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIR 475 R LL R L +L +AL ++D L+ + + LD ++ + + + HL +I + Sbjct: 192 RALLLHLRPVHLDGKNLAAALTALVDELKQKVPMTIDLDVD-DSITMKPETEDHLFRIAQ 250 Query: 476 EAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERL 535 EA+ N ++H+ A + + + ++D GIG + + YGL M ER L Sbjct: 251 EALSNTLRHSKAESMEIKL-HRKGPEVRMLLKDTGIGFDLEAKKQTSYGLLTMEERVNEL 309 Query: 536 GGTLTFSQPSGGGTLVSISFRSAEGE 561 GG L G GT + I G+ Sbjct: 310 GGYLHMISKPGEGTSIDIRVPIDGGD 335 >UniRef50_Q1J3L3 Periplasmic sensor signal transduction histidine kinase n=1 Tax=Deinococcus geothermalis DSM 11300 RepID=Q1J3L3_DEIGD Length = 412 Score = 204 bits (519), Expect = 9e-51, Method: Composition-based stats. Identities = 57/203 (28%), Positives = 100/203 (49%), Gaps = 5/203 (2%) Query: 354 QQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAY 413 ++L ++ ER +ARELHD+L L+ + +QL +R + ++ A+++ A Sbjct: 204 EELAMLRERTRLARELHDTLGHALTTITVQLEAGERLLEKNPQKARTLFERSRDLSRSAT 263 Query: 414 RQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQI 473 +LR L R + L LR + ++ +D ++ ++L Q + L ++ Sbjct: 264 AELRASLGELRRG-EMGSLGDELRALA---RSGDPDGPQVDVQVAEVSLSPQQEHALARV 319 Query: 474 IREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAE 533 REA+ N +HA A+ + + P+G + + D+G+G P GHYGL+ MRER Sbjct: 320 AREALHNVRRHAGAAHVRLDLRRTPEG-LVLQVTDDGLGFDPSLVPAGHYGLSGMRERLA 378 Query: 534 RLGGTLTFSQPSGGGTLVSISFR 556 LGG LT G GT ++ + Sbjct: 379 LLGGHLTIDSQPGQGTRLTATLP 401 >UniRef50_B4WQU2 GAF domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WQU2_9SYNE Length = 1769 Score = 204 bits (519), Expect = 9e-51, Method: Composition-based stats. Identities = 58/258 (22%), Positives = 110/258 (42%), Gaps = 11/258 (4%) Query: 310 TMQETVYGELHW----QNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQ----QLLLMEE 361 + + G + + + + ++++ L+ + + Q L E Sbjct: 1511 KVGDQPLGFIGFAFTDRTLLTEEQLQFIQALTNQATLSLHLTRLAEAAQTNALSSALTSE 1570 Query: 362 RATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLT 421 R +ARE+HD+LAQ + + +QL K + P++ + + Q + R + Sbjct: 1571 RNRLAREIHDTLAQAFTGVSLQLEAAKAAAPDNLEDSTYHIDRAGQLARRGLSEARRSVH 1630 Query: 422 TFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLN 480 R L+ LP+ALR L + + + + AL +Q +LL+I +EA+ N Sbjct: 1631 ALRSQALETDTLPNALRTALYEMTQSSPTQPHFRLKGTPFALPENIQTNLLRIGQEAITN 1690 Query: 481 AMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPE-GHYGLNIMRERAERLGGTL 539 A++HA A + + +P + + D+G G E +GL MRER R G Sbjct: 1691 ALRHAQADNLTLLLEFSP-AQVRLSVTDDGTGCEISSFSELEGFGLMGMRERVYRFDGHF 1749 Query: 540 TFSQPSGGGTLVSISFRS 557 +F+ GT++ I+ + Sbjct: 1750 SFTSHPRRGTVIDITIPT 1767 Score = 43.3 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 35/87 (40%), Gaps = 13/87 (14%) Query: 307 LPVTMQETVYGELHW----QNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEER 362 +P+ + + V G L L ++++ + + + +Q +++E+ Sbjct: 1309 VPLVLGDRVLGFLGLPFVGATHITQDDIELAQALANQATLAIQLTRLAEEAKQTAILQEQ 1368 Query: 363 ATIARELH--------DSLAQVLSYLR 381 AR+ H D+L++ L+ L Sbjct: 1369 ERAARQ-HVTELAKTNDALSETLTALT 1394 >UniRef50_C6D0G7 GAF sensor signal transduction histidine kinase n=29 Tax=Bacillales RepID=C6D0G7_PAESJ Length = 559 Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 79/427 (18%), Positives = 155/427 (36%), Gaps = 37/427 (8%) Query: 140 QHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPP 199 +H++E ++ L+ A++L G I + + + + A L ++ ++ Sbjct: 146 EHFSEEELALLQAVALQIGTAINRIRLYQTQERNAMLYAKLGDVIQRINGVQDVNQLPIK 205 Query: 200 LDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNT 259 + +E G + +Y + L LY + Sbjct: 206 AVQYIGDEFGWPNVSL--------FMYDG--------------QQLSLRALYSSGKLTKE 243 Query: 260 -SQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETVYGE 318 + V I +RDN +E + E + P +P+ ++ G Sbjct: 244 WQTLAVEAAGPIEASLRDN--RIIIESSCMEGNELDSVGIPPFRSAAAIPLRVRNRTIGV 301 Query: 319 LHWQNSH----VSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLA 374 + + +E + S+ + + +H +L MEER +AR+LHDS+ Sbjct: 302 MFISSPDQRQFDDLNEDFMYSLGDHFTLCVENLRIYEHRSELARMEERNRMARDLHDSVV 361 Query: 375 QVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPS 434 Q + L + + + Q +++ Q +A +++R L+ + L Sbjct: 362 QKVFSLSFLAKGAENVLAGRDPVVQRSLSEIQQLSQEALKEMRTLIWQLHPAGLENGLLP 421 Query: 435 ALREMLDTLQNQTSAKLTL-DCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVS 493 AL++ LT+ D L ++ +I +EA+ N KH+ + Sbjct: 422 ALKQYGQ------GLNLTIYDRTDGVQELPRAIEEAFWRIGQEALNNVRKHSGRETAYIR 475 Query: 494 CVTAPDGNHTVYIRDNGIGIGEPKEP-EGHYGLNIMRERAERLGGTLTFSQPSGGGTLVS 552 DG + +RD G G ++ G+ MRERAE LGG+L+ + G T+V Sbjct: 476 LNKQQDGAAVLEVRDEGTGFQVDRKKGRQTMGMRSMRERAETLGGSLSITSGRGKPTIVR 535 Query: 553 ISFRSAE 559 + Sbjct: 536 ATIPLES 542 >UniRef50_UPI0001B54039 histidine kinase n=1 Tax=Streptomyces sp. AA4 RepID=UPI0001B54039 Length = 443 Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 64/242 (26%), Positives = 108/242 (44%), Gaps = 9/242 (3%) Query: 323 NSHVSSSEPLLNSVSSMLGRGLYFN-QAQKHFQQLLLMEERATIARELHDSLAQVLSYLR 381 + + +L+ +++ Q ++ +++ER +++E+HD+LAQ + + Sbjct: 191 GRQNAERKRMLDQLAAAEAENRGLQRQLLAQAREAGVLDERQRLSQEIHDTLAQGFTGII 250 Query: 382 IQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALREML 440 QL ++ +D A + +A +Q + R + R L+ A LP AL E+ Sbjct: 251 TQLEAAAQA-RDDTAEWERHLAAATQLARENLTAARRSVAALRPEPLEAATLPEALAEVA 309 Query: 441 DTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDG 500 +T + L +++ LL+I +EA+ N KHA AS ++ D Sbjct: 310 RLWSERTGVPAEFSTTGTAVPLHPELEATLLRITQEALSNVAKHARASRAGITLSYMGD- 368 Query: 501 NHTVYIRDNGIGIG-----EPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 T+ RD+G+G P EG +GL MR RAERL G L GGGT VS Sbjct: 369 EVTLDARDDGVGFDPAHPPAPPSAEGGHGLPGMRRRAERLAGALHVESEPGGGTAVSARL 428 Query: 556 RS 557 + Sbjct: 429 PA 430 >UniRef50_C7Q6M5 GAF sensor signal transduction histidine kinase n=6 Tax=Actinomycetales RepID=C7Q6M5_CATAD Length = 393 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 70/306 (22%), Positives = 126/306 (41%), Gaps = 20/306 (6%) Query: 266 CFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETVYGELHWQN-- 323 +LQ A+ E W + + + L Q + + + G L N Sbjct: 86 MLAVMLQDPAPQRLADVREDPRFRWWPKAHPEMDAFLGQQ---IRDGDEILGALFLANKD 142 Query: 324 -SHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRI 382 E LL ++ L + + ++L + ER +ARELHD++AQ L LR+ Sbjct: 143 GGFTKDDEELLGVLAGHAAIALRHARLYERERELAITRERNRLARELHDAVAQKLFALRL 202 Query: 383 QLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLT-LQQADLPSALREMLD 441 + D A A++ + + +A +LR ++ R L++ L LR+ ++ Sbjct: 203 TSQAAAEVLDTDPARARAELEQVATLAKEAAEELRSVVVELRPAELEEDGLAVTLRKHVE 262 Query: 442 TL----QNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTA 497 L Q ++T + AL + LL++ +EA+ NA++HA+A+ I+V Sbjct: 263 VLDRVNQTAGGPRVTFEGE-DVKALSPAAEEVLLRVAQEALHNALRHADAATISVRLREH 321 Query: 498 ------PDGNHTVYIRDNGIGIGEP--KEPEGHYGLNIMRERAERLGGTLTFSQPSGGGT 549 G + + D+G G + GL MR+RA+ + G L + G GT Sbjct: 322 CPAGAKSCGGALLEVVDDGAGFDPATVRRAGRSLGLVSMRDRAKSVRGRLDVASAPGAGT 381 Query: 550 LVSISF 555 + + Sbjct: 382 TIRLEV 387 >UniRef50_Q024A3 Histidine kinase n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q024A3_SOLUE Length = 975 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 63/233 (27%), Positives = 97/233 (41%), Gaps = 5/233 (2%) Query: 331 PLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRS 390 LL + + G L F + Q + L + ER IARE+HD++ Q + + S Sbjct: 745 ALLATAGGVAGV-LLFQERQARERYNLRLAERTRIAREMHDTVVQGCVGVSTLIEAAVSS 803 Query: 391 IPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAK 450 D + + L + R+ LT R + LP AL E+ + + Sbjct: 804 ARSDQDLMLECLDNARIHLRMTLDEARQALTDLRHDSFEHGLPGALAELARAVSCEKGIP 863 Query: 451 LTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNG 510 + L P + L LL + REA+ NA+ H + I V + P G + IRD+G Sbjct: 864 VMLQVGGPEVRLAESTNRTLLLVTREAIRNAVLHGAPTAIEVRLLFGPAG-VHIEIRDDG 922 Query: 511 IGIGEPKE---PEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEG 560 G GH+G+ MRER E++ G+L S G GT V++ Sbjct: 923 CGFDPTPSYFAAGGHFGILGMRERMEQICGSLEISSRPGFGTTVTVDLNEPRP 975 >UniRef50_Q74GJ3 Sensory box histidine kinase n=1 Tax=Geobacter sulfurreducens RepID=Q74GJ3_GEOSL Length = 830 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 64/231 (27%), Positives = 110/231 (47%), Gaps = 9/231 (3%) Query: 333 LNSVSSMLGRGLYFNQAQKHFQQLLLMEE--RATIARELHDSLAQVLSYLRIQLTLLKRS 390 + S + R + + ++L MEE R +A ELHD + + L+ L + +++ Sbjct: 597 MELASEIAERRRAEAALRCYTRRLTEMEEDLRKKLAAELHDEIGRDLTALNLNFSVIGNR 656 Query: 391 IPEDNAT-AQSIMADFSQALNDAYRQLRELLTTFRLT-LQQADLPSALREMLDTLQNQTS 448 + + ++ + D + + D R +R L R L LP+ALR D +T Sbjct: 657 LVQGPDGCLKARIEDTERLIEDISRTVRGLTAKLRPPVLDDYGLPAALRWHADLFSRRTG 716 Query: 449 AKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRD 508 ++T+ + A+ ++ L +I++EA+ N KHANA + VS DG + + D Sbjct: 717 IEVTVRGADSVPRMPAEKEIALFRIVQEALTNCSKHANAGNVKVSL-DHGDGRVRLSVVD 775 Query: 509 NGIGIGE----PKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 +GIG P +GL IMRERAE +GGT + G GT++++ Sbjct: 776 DGIGFAPESASPTPAGSGWGLTIMRERAELIGGTFRLNTAPGKGTVLTVEI 826 >UniRef50_Q0AF09 Multi-sensor signal transduction histidine kinase n=3 Tax=Nitrosomonas RepID=Q0AF09_NITEC Length = 498 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 92/220 (41%), Gaps = 8/220 (3%) Query: 344 LYFNQAQKHFQQL------LLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNAT 397 L +++ ++L +ER IARE+HD + L+ ++ +L + Sbjct: 265 LEIARSRAQLEELSAYSQKAKEQERTRIAREIHDDIGGTLTAIKCELVPCLDNSSRAPEF 324 Query: 398 AQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRL 457 ++ A ++ R + R + + +A++ +T + C Sbjct: 325 YRNKAAAVESLVDMVIDSTRRIALDLRPGVLDCGIVAAVQWQAREFNQRTGIACAVVCDD 384 Query: 458 PTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIG-EP 516 ++LD + V + ++ +EA+ N KHA+ASE+ V + G + + DNG GI Sbjct: 385 EEISLDGDLAVAIFRVFQEALTNIAKHADASEVRVKL-SEASGEVYLEVADNGCGITYPD 443 Query: 517 KEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFR 556 E +G+ MRER ++LGG GT V I Sbjct: 444 MEKVNSFGIRSMRERCQQLGGRFHIQGEPQTGTGVMIWIP 483 >UniRef50_UPI0001C314AD GAF sensor signal transduction histidine kinase n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C314AD Length = 386 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 66/291 (22%), Positives = 112/291 (38%), Gaps = 18/291 (6%) Query: 283 LELNVGENWRISEGQPNPELPMQIL---PVTMQETVYGELHWQNSHVSSSEP-------- 331 + L + S G P PM P+ ++ +G L+ + Sbjct: 95 VRLADLGDDPRSYGFPPHHPPMHSFLGVPIVVRGRAWGNLYLTDKEGGEFAAADEEAAVI 154 Query: 332 LLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSI 391 L + + + F + + +ER ARELHD Q L L++ L+ R Sbjct: 155 LADWAAVAIDNAGRFERQRLRDTMAAAEQERRRWARELHDETLQGLGGLQVLLSSALRR- 213 Query: 392 PEDNATAQSIMADFSQALNDAYRQLRELLTTFRLT-LQQADLPSALREMLDTLQNQTSAK 450 + + + + + + +LR L+T R L + L AL + + Sbjct: 214 SSEPSQVEGAVRAAVEEIGTEIEKLRTLITELRPAALDELGLEPALESLAGRVAAVEGIV 273 Query: 451 LTLDC---RLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIR 507 +T + L ++ + ++++EA+ NA+KHA A + V VT DG + +R Sbjct: 274 VTSEVVLADGERRRLPPDLETAVYRLVQEALTNAVKHARAERVDVR-VTERDGCVELTVR 332 Query: 508 DNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSA 558 D+G G P +GL M ER GGTL G GT + + A Sbjct: 333 DDGAGFDVGA-PRAGFGLLGMEERVALAGGTLAVQSRPGAGTTIRATLSGA 382 >UniRef50_C5UZV3 PAS/PAC sensor signal transduction histidine kinase n=1 Tax=Gallionella ferruginea ES-2 RepID=C5UZV3_9PROT Length = 401 Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 56/272 (20%), Positives = 114/272 (41%), Gaps = 20/272 (7%) Query: 298 PNPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQL- 356 P+ E+ L ++T HW+ L+ +++ + +++ ++L Sbjct: 134 PDGEIKWVNLRAKYRKTDLLGTHWKG--------LVVNITQNKQAEIELVHSRQQLRELS 185 Query: 357 -----LLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALND 411 + EER IARE+HD + +L+ L++ L +++ P D+ Q + L+ Sbjct: 186 SHIENIKEEERTRIAREIHDEIGVLLTALKMDLAWMRQRFPSDDGALQEKSQVMANLLDT 245 Query: 412 AYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHL 470 A L+ + R +L + +A+ +T+ + L + + + L Sbjct: 246 AGIAANNLVHSLRPGSLDCFGIVAAIEIEATEFTKRTATPCKIIKSSDNLDVSDEQSITL 305 Query: 471 LQIIREAVLNAMKHANASEIAVSCVTAP----DGNHTVYIRDNGIGIGEPKE-PEGHYGL 525 ++ +E + N MKHA A + V + D + + D+G G E +GL Sbjct: 306 FRVFQETLNNIMKHAQARRVQVKISQSATDQIDKYVELIVSDDGCGFDEAARNKPRSFGL 365 Query: 526 NIMRERAERLGGTLTFSQPSGGGTLVSISFRS 557 ++ER +L GTL+ + G GT +++ Sbjct: 366 RGIQERIRQLDGTLSITSRPGKGTKIAVRLPK 397 >UniRef50_C5C2U0 Histidine kinase n=2 Tax=Actinomycetales RepID=C5C2U0_BEUC1 Length = 431 Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 55/217 (25%), Positives = 98/217 (45%), Gaps = 8/217 (3%) Query: 347 NQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFS 406 Q ++ +++ER +ARE+HD+LAQ L+ + QL +++ E + + + Sbjct: 201 AQLLVQAREAGVLDERQRMAREIHDTLAQGLAGILTQLQAAEQAAHE-PEAWGRHVTNAT 259 Query: 407 QALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQ 465 ++ + R + L A LP A+ ++ + L + Sbjct: 260 DLARESLAEARRTVHAVEPEALADARLPEAIGDVARRWSEVNDVRADLTTTGDPRPMHVD 319 Query: 466 MQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEP-----E 520 ++V LL+ +EA+ N KHA AS + ++ D T+ +RD+G+G + Sbjct: 320 VEVTLLRAAQEALANVAKHARASRVGLTLSYMED-LVTLDVRDDGVGFEPDATRGQGHAD 378 Query: 521 GHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRS 557 G +GL MR+R +RL G L GGGT +S S + Sbjct: 379 GGFGLAGMRQRVQRLAGRLDVESEPGGGTAISASVPA 415 >UniRef50_C6WV68 PAS/PAC sensor signal transduction histidine kinase n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WV68_METML Length = 499 Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 55/243 (22%), Positives = 99/243 (40%), Gaps = 4/243 (1%) Query: 317 GELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQV 376 G + W ++ ++ + R Q H Q+ + ER IARE+HD L Sbjct: 260 GVVQWVGMMINITQSKNEKLELQESRH-ELAQLTAHMNQIKEL-ERTRIAREIHDDLGGN 317 Query: 377 LSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSAL 436 L+ ++I LT + I + +++ + + ++ + R + + +AL Sbjct: 318 LTAIKIGLTSIINRIATGLPVSFEQAKGLESIVDNTFEAIHKISSDLRPNILDLGIVAAL 377 Query: 437 REMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVT 496 + Q T + + + L +I +E++ N KHANAS + V Sbjct: 378 EWQAKEFEKQVGVTCTFTTNQADIVVTPDQAITLFRICQESMSNIAKHANASAVHVDLNL 437 Query: 497 APDGNHTVYIRDNGIGIGEPKE-PEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 G + I DNGIGI +GL M+ER L G+ Q +G GT+++++ Sbjct: 438 HY-GEIIMKISDNGIGINTADTYKPNSFGLRGMQERVAALYGSFDIEQLAGQGTVIAVTL 496 Query: 556 RSA 558 Sbjct: 497 PIE 499 >UniRef50_C0ZJS5 Two-component sensor histidine kinase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZJS5_BREBN Length = 365 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 56/212 (26%), Positives = 96/212 (45%), Gaps = 7/212 (3%) Query: 357 LLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQL 416 EER IARELHD + Q L + + L ++++ E + +A+ + A ++ Sbjct: 150 AQEEERKRIARELHDGVGQALYSILVGLNVVRQR--ELSEPVMQHVAELVNMTSKAMEEV 207 Query: 417 RELLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIR 475 + + R + L L ALR ++ ++ ++ L + A M+ L +I++ Sbjct: 208 KRMALELRPSALDDLGLLPALRSLMKRVEKTFHIQVELHVQGEKRRYSAAMETALYRIVQ 267 Query: 476 EAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLN--IMRERAE 533 EA+ N K+A AS + + + V I D+G+G K + GL M+ERA+ Sbjct: 268 EAMTNTAKYAKASHLGI-MFENREKEIVVTIVDDGVGFEVEKTLKIGKGLGVFGMKERAQ 326 Query: 534 RLGGTLTFSQPSGGGTLVSISFRSA-EGEESQ 564 LGGT+ GT V + EG E + Sbjct: 327 LLGGTVDIRSAPEEGTTVIVRIPVPKEGVEDE 358 >UniRef50_A1AUQ4 PAS/PAC sensor signal transduction histidine kinase n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1AUQ4_PELPD Length = 489 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 66/307 (21%), Positives = 127/307 (41%), Gaps = 14/307 (4%) Query: 257 LNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETVY 316 L+ ++ H + V A++ E++ E +S + +P+ + T Sbjct: 195 LHPPEMAEHFAAQFRRTV-----AQHREVDNAEAIVVS--KSGRRIPVH---IKHSVTRV 244 Query: 317 GELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQV 376 GE+ + + ++ H Q + ER +AR++HD + Q Sbjct: 245 GEMSIMQGLFRDISERVRAEEQLVELNQKLRALSDHL-QTVQERERLAMARDIHDEIGQS 303 Query: 377 LSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTL-QQADLPSA 435 L+ L++ L + +P + Q + + + ++ + R L L +A Sbjct: 304 LTVLKLDLEWIAHRLPAKESAVQERVNEMRWNIEQLTSAVQRIAADLRPPLLDSLGLAAA 363 Query: 436 LREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCV 495 + + ++ + + L+ Q+ +++I++E + N ++HA A+E++VS Sbjct: 364 IDWHVAEFSRRSGIECFVMLNEEVDPLEPQLATAVMRIVQEGLTNVLRHARATEVSVSL- 422 Query: 496 TAPDGNHTVYIRDNGIGIGEPK-EPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSIS 554 DG + I DNG GI + E YGL M+ERA G LT GGGTL+ ++ Sbjct: 423 CKRDGQLVLEIGDNGRGIRPEEIESPQAYGLMGMQERARICRGELTVGGAEGGGTLLRVT 482 Query: 555 FRSAEGE 561 GE Sbjct: 483 VPLQSGE 489 >UniRef50_D1AAA6 Histidine kinase n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1AAA6_THECD Length = 664 Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats. Identities = 65/328 (19%), Positives = 114/328 (34%), Gaps = 32/328 (9%) Query: 251 YQCSQALN-----TSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELP-M 304 Y+ + LN S + A + G R + Q P Sbjct: 333 YRIADRLNRRLQTASDPAAALAVAASAVREALRATGVVVEVTGREGRAALAQDGDLGPDP 392 Query: 305 QILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERAT 364 + +P+ G L + + ++ L + Q+ R Sbjct: 393 ESIPLVWHGRPVGRLLLSRTE-PPDRRIAAVMARNLAELANAVRLTADVQRS-----RER 446 Query: 365 I-----------ARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAY 413 I R+LHD L L+ L + + + ++ D A ++ +N Sbjct: 447 ILATREEERRRLRRDLHDGLGPTLASLAMTVDAARLTLRRDPAAVDPLLERLRTTMNQTI 506 Query: 414 RQLRELLTTFR-LTLQQADLPSALREMLDTLQNQTS----AKLTLDCRLPTLALDAQMQV 468 +REL+ R L L A++ + D ++ ++ L A ++V Sbjct: 507 ADIRELVYGLRPPALDDLGLAGAVQALADGAAESPGGGDPLRVRVELSGDLEDLPAAVEV 566 Query: 469 HLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIM 528 +I++EA+ N +HA A+ V + G V + D+G+G P G++ M Sbjct: 567 AAYRIVQEALTNVRRHARATTAVVRLERS--GELRVSVADDGVG--PPAAARAGVGMSSM 622 Query: 529 RERAERLGGTLTFSQPSGGGTLVSISFR 556 RERA LGG+ + GGTLV Sbjct: 623 RERAAELGGSCSIGPGPAGGTLVQARLP 650 >UniRef50_A1WYG6 Histidine kinase n=1 Tax=Halorhodospira halophila SL1 RepID=A1WYG6_HALHL Length = 475 Score = 202 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 95/411 (23%), Positives = 162/411 (39%), Gaps = 34/411 (8%) Query: 179 PLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKL----YRSLEASVE 234 P+ +L + + P + E L ++++ L SLE +E Sbjct: 46 PVRRLRAPPTPTPYPDTPNVPASSASEQEALHLLSALGVVAAQARDLDELLQGSLERLIE 105 Query: 235 EKTR-----DLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQ---IVRDNEAAEYLELN 286 + L + + L ++ LN ID + + + Sbjct: 106 QTGATAAAVRLFDEQGSLRLVEASG--LNAGFIDAERRQPAAGCSCAIAGERGTVQFRGD 163 Query: 287 VGENWRISEGQPNPELP---MQILPVTM-QETVYG--ELHWQNSHVSSS---EPLLNSVS 337 + + R S P P P M +P+ G ++ + S +L + Sbjct: 164 LRQCIRRSGCNPLPNRPQLAMLAVPILDPAGERVGIYNIYLEPSEAQRWMHPPRMLEWIG 223 Query: 338 SMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNAT 397 LG + + + Q L EER +A ELHD++AQ ++ LR+++ L+ D T Sbjct: 224 HQLGAAIARVRDEYRSHQGALQEERNLLAHELHDTVAQEVATLRLRVRQLEERARGDADT 283 Query: 398 AQ--SIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDC 455 A + + D L+ Q+R ++ FR L +AL + + + + ++ L Sbjct: 284 AALLAPLEDLRTRLDHTNDQVRTVMQQFRTQALGTPLETALSRLANRFRRDSGIEVRLIH 343 Query: 456 RLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGI-- 513 R P LAL + Q+H+ +I+ EA+ NA H A + + T P G+ + I D+G G Sbjct: 344 RWPELALGEREQLHIHRIVEEALSNAWHHGGARNVRLQLET-PGGDLCLLIEDDGCGFVV 402 Query: 514 -----GEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAE 559 +P E GH GL MRERA LG LT G GT + + + Sbjct: 403 DDVPDSDPAESRGH-GLRGMRERARHLGAILTVESDPGQGTTIHLRLPQPQ 452 >UniRef50_A4J6C1 Histidine kinase n=2 Tax=Peptococcaceae RepID=A4J6C1_DESRM Length = 379 Score = 202 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 60/243 (24%), Positives = 109/243 (44%), Gaps = 14/243 (5%) Query: 319 LHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLS 378 L + + +S L ++ M G+ +AQ+ EER +ARE+HD AQ ++ Sbjct: 143 LQYLSKDLSGVSEKLTNLHDMQQLGISIIRAQE--------EERKRVAREIHDGPAQSMA 194 Query: 379 YLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALR 437 + ++ + + + + + + Q + + + +R+++ R L L A++ Sbjct: 195 NIVMRAEFCLKLLEMNPSMVGNELVSLQQLVRQSLQDVRKIIFDLRPMVLDDLGLIPAVK 254 Query: 438 EMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTA 497 L+ + Q + DA M+V + +II+EA++N KHA A + + Sbjct: 255 RYLEDYKVQNNISADFVFIGKEQRFDASMEVAVFRIIQEALINIKKHAAARHVLIKMELI 314 Query: 498 PDGNHTVYIRDNGIGIGE----PKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSI 553 VYI+D+G G P+ YGL MRER + L GTL+ + G GT ++ Sbjct: 315 -SSRINVYIKDDGCGFVVGHIKPRGDGSGYGLLGMRERIQLLKGTLSINSTPGKGTELNF 373 Query: 554 SFR 556 S Sbjct: 374 SLP 376 >UniRef50_C3RLD8 Two-component system sensor histidine kinase n=3 Tax=Bacteria RepID=C3RLD8_9MOLU Length = 439 Score = 202 bits (513), Expect = 5e-50, Method: Composition-based stats. Identities = 49/203 (24%), Positives = 95/203 (46%), Gaps = 7/203 (3%) Query: 361 ERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELL 420 ER +ARE+HD+L L+ + + I D + + S+ + + +R L Sbjct: 241 ERKRLAREIHDTLGHALTGIAAGIDACIAMIDIDPNVTKQQLLVVSKVVREGISDVRRSL 300 Query: 421 TTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVL 479 R L++ L A+++M+ + + ++ LD +L + + + + +I++E++ Sbjct: 301 NKLRPGALEEHTLKEAIQKMIKEFSDVSEVEIMLDYQLDKVDFENTKEDIIFRIVQESIT 360 Query: 480 NAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTL 539 NA++H A ++ ++ + + I DNG+G + K YGL M+ERA L G L Sbjct: 361 NALRHGRAKKVEINIYQRV-SDLEIVIADNGVGCDDLKL---GYGLKQMQERAAILNGRL 416 Query: 540 TFSQPSGGGTLVSISFRSAEGEE 562 + G V ++ EGE Sbjct: 417 EYYSK--EGFTVKVTIPMKEGER 437 >UniRef50_B2A6W3 Integral membrane sensor signal transduction histidine kinase n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A6W3_NATTJ Length = 490 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 60/216 (27%), Positives = 98/216 (45%), Gaps = 12/216 (5%) Query: 357 LLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQL 416 EER I+RELHD Q L+ L++ L + + D A+ + + + D ++ Sbjct: 269 AQEEERKKISRELHDGTGQSLTTLKLALKQISET--NDLEEAKRMSEELRELTGDVIDEI 326 Query: 417 RELLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLTLDCRLP-TLALDAQMQVHLLQII 474 + L R + L L AL + L +Q +T + L L+ ++ ++ +I+ Sbjct: 327 KSLARDLRPSVLDDLGLDYALEKYLKEIQGRTGVSTEFWFQADQGLKLEPEISTNIYRIV 386 Query: 475 REAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEG-------HYGLNI 527 +E+V N++KHA+AS+I V V V I D+G G + + G+ Sbjct: 387 QESVNNSIKHADASKIDV-IVKTISSQLIVIIEDDGKGFDLEQFSDNYKQNETRGLGIFG 445 Query: 528 MRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEES 563 M ERAE +GG L G GT V + A+ E S Sbjct: 446 MEERAELIGGHLAIESTPGDGTAVYLKINLAKEETS 481 Score = 46.4 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 45/103 (43%), Gaps = 12/103 (11%) Query: 129 VNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQ 188 ++ID V + +L+V + L + + ++ P+ +LV+A++ Sbjct: 157 TSEIDQLVHQICSNIWLTVLIVSIVGLITAYLLSLI-----------IINPIYRLVSATE 205 Query: 189 RIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEA 231 ++ G PL +E+G L+ +F +M L L + E+ Sbjct: 206 QVAKGHLHGIPLVV-TNDEIGKLSLSFKKMIEGLKSLRENNES 247 >UniRef50_A9B913 Multi-sensor signal transduction histidine kinase n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B913_HERA2 Length = 695 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 78/313 (24%), Positives = 138/313 (44%), Gaps = 14/313 (4%) Query: 259 TSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELP--MQILPVTMQETVY 316 T QI + + ++A+ +L + W +QIL Sbjct: 380 TDQILTTLLQTAQPYLHHDQASSFLRVPAAPAWTAFPILARGCCLGIVQILHGVQTAIRP 439 Query: 317 GELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEE--RATIARELHDSLA 374 G+LH+ + ++ + ++ + +Q Q+ QL+ +E RA +ARELHD + Sbjct: 440 GDLHFAQALIAHAAVAIDQAQLLADVHESEDQLQRLTHQLVTTQETERAALARELHDGVG 499 Query: 375 QVLSYLRIQLTLLKRSIPEDNATA-QSIMADFSQALNDAYRQLRELLTTFRLT-LQQADL 432 Q L+ L++ L S P T + + + + + D Q+R+L R L+ L Sbjct: 500 QALTGLKLYLE----STPLQPITVWRDRIHEATGQVIDILSQVRQLSLDIRPAALEDLGL 555 Query: 433 PSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAV 492 +L+ +L ++ QT + L P L +++ L ++I+EAV N +++AN + A+ Sbjct: 556 MVSLQWLLQRVEQQTGVVIALHPYTPIPPLPHAIELALYRVIQEAVNNLVRYANVATAAI 615 Query: 493 SCVTAPDGNHTVYIRDNGIGIGEPK--EPEGHYGLNIMRERAERLGGTLTFSQPSGGGTL 550 G ++ I+D+G G + + GL MRER LGGTLT G GT Sbjct: 616 YFGVTTTG-VSLLIQDHGRGFDVAQVCQMPRGIGLVGMRERIRMLGGTLTIESALGHGTS 674 Query: 551 VSISFR-SAEGEE 562 +++ GEE Sbjct: 675 LTVDVPCRPRGEE 687 >UniRef50_A3NKQ6 Signal transduction histidine kinase n=29 Tax=Burkholderia RepID=A3NKQ6_BURP6 Length = 492 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 56/225 (24%), Positives = 94/225 (41%), Gaps = 4/225 (1%) Query: 337 SSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDN- 395 L + Q + EE+ IARELHD L Q L+ L++ +TL+ + + Sbjct: 261 EDALRVSREELRRLSAHIQSIREEEKTRIARELHDDLGQQLTALKMAVTLVDNELKDAGW 320 Query: 396 ATAQSIMADFSQALNDAYRQLRELLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLTLD 454 A+ S + + + +R + R L L +A+ + + +T Sbjct: 321 ASRTSRLPNVYALIGQLLDSVRRIAADLRPVMLDDLGLMAAIEWLTHEFVERYRIPVTSR 380 Query: 455 CRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIG 514 +A + +I++EA+ N +H+ A+E+ + + + N V I DNG G Sbjct: 381 IEADDIAFTRGSATEVFRIVQEALTNVARHSEATEVTLDIIR-DEPNCIVRIADNGCGTA 439 Query: 515 EPKEPEGH-YGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSA 558 P H GL MRERA RLGG + G G ++ + A Sbjct: 440 RDTRPNRHSLGLLGMRERAARLGGEIRIDTAPGRGFALTATLPLA 484 >UniRef50_C0XNJ5 Two component system histidine kinase n=1 Tax=Corynebacterium lipophiloflavum DSM 44291 RepID=C0XNJ5_9CORY Length = 412 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 59/222 (26%), Positives = 101/222 (45%), Gaps = 13/222 (5%) Query: 347 NQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSI------PEDNATAQS 400 Q + ++ + +ER +A E+HD++AQ LS +++ L R + P + A A+S Sbjct: 182 QQLAETEREAGVSQERERLAHEIHDTVAQGLSSIQMLLHAADRDLDATGLPPGELARAKS 241 Query: 401 IMADFSQALNDAYRQLRELLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLTLDCRLPT 459 + +A + + R ++ L +A L AL + + + ++ Sbjct: 242 RIETARRAASSNLAETRAMIAALTPAPLTEASLRQALERIARDFSQASGIGIEVESDGEH 301 Query: 460 LALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGE---- 515 L + + LL+I + AV NA++H+ A+ I V+ +PD + + DNG G Sbjct: 302 TPLPMRCEAGLLRIAQGAVSNAVQHSGATRIRVTLTYSPD-EVRLDVVDNGRGFDPLALE 360 Query: 516 -PKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFR 556 GH GL+ MR RAE LGG L GG T V+ + Sbjct: 361 SAPTGLGHLGLSAMRSRAEELGGELIVESAPGGPTAVTAAIP 402 >UniRef50_B4D5C3 Histidine kinase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D5C3_9BACT Length = 697 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 81/383 (21%), Positives = 142/383 (37%), Gaps = 27/383 (7%) Query: 188 QRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRL 247 +R+ G P+D G L + ++ L +L L K +L K Sbjct: 323 RRVGRG-LPPKPIDVTA----GQLLEG--RLDRRLVRLQAQLVEQSRRKGEELLVMKAG- 374 Query: 248 EVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQIL 307 EVL+ + + + IL + L +GE+ + P + + Sbjct: 375 EVLFNARLSPSDDGVSSLANDSILSLTG------ICRLQMGEHRPVLGDWPVSAFELLLP 428 Query: 308 PVTMQETVYGELHWQNSHVSSSEPLLNSV-------SSMLGRGLYFNQAQ--KHFQQLLL 358 V W + ++ + +ML + A + Sbjct: 429 SPDDVHVVKPPDWWTQQRAAWLLAVVTGLLVGAMCWVAMLRHRVRLQTAIISDRLRAEAA 488 Query: 359 MEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRE 418 + ER IARELHD++ Q L+ + + ++ E + + + + + Sbjct: 489 LNERERIARELHDTVEQDLAAIGMHFEVITDRALELEPMVRENFEAAVRQVRRSQADMHH 548 Query: 419 LLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREA 477 + R TL + L AL E L A P L ++ HLL+I +EA Sbjct: 549 AVWDLRSGTLVERGLGPALEEALQLSAAHCGAVPECKEYGPVRRLPGVIEHHLLRIGQEA 608 Query: 478 VLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEG--HYGLNIMRERAERL 535 + NA++HA I+++ D T+ + D+G G + +GL MRER ER+ Sbjct: 609 MSNAVRHAAPKRISIALRYEGD-TLTMRVEDDGCGFDVEARSQNTARFGLMGMRERVERI 667 Query: 536 GGTLTFSQPSGGGTLVSISFRSA 558 GG L+ G G++V + R+A Sbjct: 668 GGRLSVQSTPGTGSVVEVVLRNA 690 >UniRef50_Q0B944 Multi-sensor signal transduction histidine kinase n=29 Tax=Burkholderiaceae RepID=Q0B944_BURCM Length = 707 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 51/228 (22%), Positives = 100/228 (43%), Gaps = 15/228 (6%) Query: 345 YFNQAQKHFQQL------LLMEERATIARELHDSLAQVLSYLRIQLTLLKRSI-----PE 393 Q+++ ++L + EE+ IARELHD L Q L+ L++ L+++++ + + Sbjct: 472 ALKQSREELRELSANLQNVREEEKTRIARELHDDLGQQLTALKMDLSVIEQQLRAPGRAQ 531 Query: 394 DNATAQSIMADFSQALNDAYRQLRELLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLT 452 N S + + ++ +R + R L L A+ + + N+ + Sbjct: 532 PNDDVLSHLQGMRRLIDATVASVRRIAADLRPVMLDDLGLVPAIEWLANDFTNRYGIDVE 591 Query: 453 LDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIG 512 L + L +I++EA+ N +HA+A+ +A+ +G + + DNG G Sbjct: 592 RHIETGGLTFTSAGATTLFRIVQEALTNVARHADATRVALRL-DIEEGFCVLRVADNGRG 650 Query: 513 IGE--PKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSA 558 + +GL +RERA LGG +T G ++++F Sbjct: 651 AAPGGSAHEDKSFGLIGIRERAHMLGGNVTIDTALARGFSITVAFPLG 698 >UniRef50_D1CF52 Two component transcriptional regulator, LuxR family n=2 Tax=Bacteria RepID=D1CF52_THET1 Length = 1648 Score = 201 bits (511), Expect = 7e-50, Method: Composition-based stats. Identities = 63/212 (29%), Positives = 108/212 (50%), Gaps = 8/212 (3%) Query: 354 QQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDN-ATAQSIMADFSQALNDA 412 ++ + +ERA IARE+HD+LAQVL Y+ + + R + + A + + A A Sbjct: 1217 REAAINQERARIAREMHDTLAQVLGYVNTKAQAVYRMLSHGSVEEAVVQLEQLASAARSA 1276 Query: 413 YRQLRELLTTFRLTLQ-QADLPSALREMLDTLQNQTSAKLTLDCR--LPTLALDAQMQVH 469 Y LRE + R ++ + L +L + + T + Q+S K+ L+ + A+ + ++ Sbjct: 1277 YADLREDILGLRTSVDSERRLKDSLLDYIRTWEQQSSIKVELEIDPDVDLDAIPSSAEIQ 1336 Query: 470 LLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEG---HYGLN 526 LL+II+E++ N KH+NAS V D V I D+G G + +G++ Sbjct: 1337 LLRIIQESLANVRKHSNASSAKVKFE-EVDNWLQVTIEDDGQGFDVHDQGRSDFPRFGIS 1395 Query: 527 IMRERAERLGGTLTFSQPSGGGTLVSISFRSA 558 +M+ERAE +GG L + G GT V + + Sbjct: 1396 MMKERAEAIGGLLCINSEPGVGTTVIVRVPIS 1427 >UniRef50_C3BJ53 Signal transduction histidine kinase n=3 Tax=Bacillus RepID=C3BJ53_9BACI Length = 463 Score = 201 bits (511), Expect = 7e-50, Method: Composition-based stats. Identities = 59/228 (25%), Positives = 98/228 (42%), Gaps = 10/228 (4%) Query: 333 LNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIP 392 LN ++ L L Q L +EER +ARELHDS+ Q L I L K I Sbjct: 215 LNQMAKQLRTLLRVRQ------DLATLEERNRLARELHDSIKQQLFATSIWLNTSKSLIG 268 Query: 393 EDNATAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKL 451 +D+ A+ + L+ R+L L+ R L+ +L AL++ Q QT + Sbjct: 269 KDDDIAKDHLLKAENLLHQTQRELSALIRELRPVALEGKNLAHALKDYAGMWQEQTGIMV 328 Query: 452 TLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGI 511 L+ + ++ +I +EA+ N +H+ A+ + + + T+ I DNG Sbjct: 329 NLETSGQ-QQVSPIIEETFFRITQEALNNVARHSQANMVMIHLEC--EEVVTLSIHDNGC 385 Query: 512 GIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAE 559 G + GL+ MRER L G + G +++ + A+ Sbjct: 386 GFDMQRGARQGVGLSSMRERIHALKGNIDIQSGIEKGVKITVQCKQAD 433 Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 60/163 (36%), Gaps = 10/163 (6%) Query: 155 LAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKT 214 LA IG + +V + +++ ++ + G F + + +ELG LA Sbjct: 156 LAFFIGAAIVGITFGIITSRSLVRRIQKILNSTDQWSQGDFTT-FVHDPSKDELGQLAYK 214 Query: 215 FNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQC-SQALNTSQIDVHCFRHILQI 273 NQM+ +L L V + L E R L+ Q L + I ++ + ++ Sbjct: 215 LNQMAKQLRTL-----LRVRQDLATLEERNRLARELHDSIKQQLFATSIWLNTSKSLIGK 269 Query: 274 VRDNEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETVY 316 D L+ EN + L ++ PV ++ Sbjct: 270 DDDIAKDHLLK---AENLLHQTQRELSALIRELRPVALEGKNL 309 >UniRef50_B1ZUT3 Integral membrane sensor signal transduction histidine kinase n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZUT3_OPITP Length = 385 Score = 201 bits (511), Expect = 7e-50, Method: Composition-based stats. Identities = 57/237 (24%), Positives = 94/237 (39%), Gaps = 5/237 (2%) Query: 324 SHVSSSEPLLNSVSSMLGRGLY-FNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRI 382 S +S L Q +L ER IARE+HD + L+ + + Sbjct: 151 RQARESRQHAEQLSQELAAANEQLRQHAAEAGELATTRERNRIAREIHDGIGHYLTTINV 210 Query: 383 QLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDT 442 QL + A A + + ++ +A +R + T R + LP LR + Sbjct: 211 QLEAARAVFTAQPAQAATALDQAARLSREALEDVRRSVGTLRADSTRPPLPETLRALAAN 270 Query: 443 LQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNH 502 L T+ + L A ++ L + +E + N KHA A+ I V+ A + Sbjct: 271 L----GLNATVRVQGAPRTLPANVEHALFRSAQEGLTNVCKHAAATAIDVALDFAQEQRI 326 Query: 503 TVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAE 559 + + D+G G+ P +GL +RER E LGG + F GG + + + E Sbjct: 327 ALTLADDGQGLPVGGHPTKGHGLQGLRERVELLGGMVRFGNRPEGGFTLRVELPTKE 383 >UniRef50_B4D6U9 Multi-sensor signal transduction histidine kinase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6U9_9BACT Length = 638 Score = 201 bits (511), Expect = 7e-50, Method: Composition-based stats. Identities = 60/255 (23%), Positives = 108/255 (42%), Gaps = 14/255 (5%) Query: 322 QNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQL------LLMEERATIARELHDSLAQ 375 + + + ++ + ++L EER I+RE+HD LAQ Sbjct: 385 SAGKIVGASQIARDITEQKRALEQLRNSHAQLRELTGRLHAAREEERGRISREIHDVLAQ 444 Query: 376 VLSYLRIQLTLL-KRSIPEDNATAQSIMAD----FSQALNDAYRQLRELLTTFRLT-LQQ 429 L+ L++ L+ + KR + T + + + ++ ++ + ++ + T R L Sbjct: 445 QLTRLKMDLSWIDKRLAQSVDETTRQALGEKVRSATELVDSSIGAVQHIATELRPVVLDA 504 Query: 430 ADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASE 489 L +A+ + Q T + +D L L +I++E + N M+HA A+ Sbjct: 505 LGLAAAVEWQVTQFQEHTGVQCQVDIDGEEPRLPHDHATGLFRILQETLTNVMRHAGATL 564 Query: 490 IAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGH-YGLNIMRERAERLGGTLTFSQPSGGG 548 + VS PD T+ +RDNG GI + H GL MRERA GG +T G Sbjct: 565 VEVSLRMEPD-ILTLSVRDNGRGITAGELSNMHSIGLLGMRERALLFGGKVTIHGIPEKG 623 Query: 549 TLVSISFRSAEGEES 563 T V ++ + ++ Sbjct: 624 TTVVVTMPLSAASQT 638 >UniRef50_B9XQH3 PAS/PAC sensor signal transduction histidine kinase n=1 Tax=bacterium Ellin514 RepID=B9XQH3_9BACT Length = 843 Score = 201 bits (511), Expect = 8e-50, Method: Composition-based stats. Identities = 57/224 (25%), Positives = 100/224 (44%), Gaps = 3/224 (1%) Query: 341 GRGLYFNQAQKHFQQLLLM--EERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATA 398 G + ++ +++L + E+ I +LHD + Q L+ + + L + E Sbjct: 608 GMARDITERKRLEREILEISNREQRRIGHDLHDGVCQQLAGIAFMTSTLAEKLQEKGEAE 667 Query: 399 QSIMADFSQALNDAYRQLRELLTTF-RLTLQQADLPSALREMLDTLQNQTSAKLTLDCRL 457 + + S LN A Q R + + L++ L SAL E+ + Sbjct: 668 SAQVERISGLLNTAINQTRSVARGLFPVRLEENGLVSALEELAANAGDLFKISCRFVSEE 727 Query: 458 PTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPK 517 P +++D + +HL I +EAV NA KHA A + ++ G + + ++D+G+G+ P+ Sbjct: 728 PPVSVDNGIALHLYYIAQEAVTNAAKHAKAQNVFITLEPVKGGRYELTVKDDGVGLAIPE 787 Query: 518 EPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGE 561 + G+ IM RA +G TL+ G GT VS F E Sbjct: 788 KAHPGMGIRIMHYRARVIGATLSLKSKPGSGTQVSCLFFPVSRE 831 >UniRef50_D2ARZ7 Histidine kinase n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2ARZ7_STRRD Length = 397 Score = 201 bits (511), Expect = 8e-50, Method: Composition-based stats. Identities = 57/251 (22%), Positives = 97/251 (38%), Gaps = 13/251 (5%) Query: 318 ELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLL----MEERATIARELHDSL 373 + + E ++ + +L + ER +A E+HD+L Sbjct: 154 VIFFSAVFGIWMERIMRQSEERAALIAELEAQRAEVSRLSAERGALAERERLAGEIHDTL 213 Query: 374 AQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLT-LQQADL 432 AQ + + + + + D A ++ Q + + R L+ L + L Sbjct: 214 AQGFTSIIMLIQAAE--AQSDPAR---HLSLAVQTARENLAEARALIAALSPAPLDGSTL 268 Query: 433 PSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAV 492 AL + L+ +T R + L +V LL+ +EA+ N KHA A + V Sbjct: 269 DEALVRLAGRLREETGIATAFSLRGESRPLPPPTEVVLLRAAQEALANVRKHAAAGRVEV 328 Query: 493 SCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVS 552 S P+ + IRD+G G YGL MR R E++GGTLT + GGT + Sbjct: 329 SASYGPE-TVALEIRDDGRGFDPAVAE--GYGLRGMRARVEQVGGTLTLTSSPAGGTTLE 385 Query: 553 ISFRSAEGEES 563 + + + Sbjct: 386 AVLPAEQPDRG 396 >UniRef50_C4DC51 Histidine kinase with GAF domain n=2 Tax=Actinomycetales RepID=C4DC51_9ACTO Length = 566 Score = 200 bits (510), Expect = 8e-50, Method: Composition-based stats. Identities = 68/270 (25%), Positives = 118/270 (43%), Gaps = 7/270 (2%) Query: 299 NPELPMQILPVTMQETVYGELHWQNSHVS--SSEPLLNSVSSMLGRGLYFNQAQ--KHFQ 354 ++ ++P+ G + ++ S+ + +V S G L A + Q Sbjct: 291 TGQVSSLVVPLVADRRTVGLVLLESDLPDAYPSDVVDAAVESTTGAALRLETALLFEEVQ 350 Query: 355 QLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYR 414 L MEER +ARE+HD +AQ L+ L + +P D + + + + Sbjct: 351 SLATMEERQRLAREIHDGIAQELAMLGYGIDHALAQLPADATDSAEQLQELRDEVTRLIT 410 Query: 415 QLRELLTTFRLTLQ-QADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQI 473 +LR L R + L +A+ + T+ + ++ L L A + LL+I Sbjct: 411 ELRLSLFELRSEVDRHGGLTTAIADYARTVGSSAGLRVHLSLDEGGARLPAATEAELLRI 470 Query: 474 IREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAE 533 +EA+ NA KHA A + V+C P + + D+G G+ + +G YGL IM ERAE Sbjct: 471 AQEAITNARKHARAENLWVTCEVDP-PYARIEVADDGTGVS-GEGADGRYGLTIMSERAE 528 Query: 534 RLGGTLTFSQPSGGGTLVSISFRSAEGEES 563 R+ G+L GT V++ ++ + Sbjct: 529 RIRGSLEIRPRDPHGTTVAVLLAPSDRPGT 558 >UniRef50_B2J2K6 Integral membrane sensor signal transduction histidine kinase n=2 Tax=Cyanobacteria RepID=B2J2K6_NOSP7 Length = 419 Score = 200 bits (510), Expect = 9e-50, Method: Composition-based stats. Identities = 58/219 (26%), Positives = 94/219 (42%), Gaps = 4/219 (1%) Query: 342 RGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSI 401 Q + ++ER IARE+HD L L IQ+ +N A + Sbjct: 200 TNQQLCQYALRIEDQATLQERNRIAREIHDGLGHTLVAQTIQINNTLLFWESNNDKALTF 259 Query: 402 MADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTL 460 + + +A ++R L+ R LQ L SA+ ++L T + + +P Sbjct: 260 LKQAKELGAEALLEIRRSLSLLRSNPLQGQSLQSAIEKLLTDFHQTTGIEPSCKIDVPH- 318 Query: 461 ALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPE 520 L ++ L +I++E++ N KHA A+ + V + G + I DNG G + Sbjct: 319 TLPTEINTALYRIVQESLTNICKHAQATSVTVRLLART-GMIHLSIEDNGKGFNPTQNTT 377 Query: 521 GHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAE 559 G +GL MRERA LG L G G +S+S ++ Sbjct: 378 G-FGLQGMRERAVALGAQLNLQSQLGTGCCISVSLPLSK 415 >UniRef50_B1ZU88 Histidine kinase n=2 Tax=Opitutus terrae PB90-1 RepID=B1ZU88_OPITP Length = 1048 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 59/251 (23%), Positives = 107/251 (42%), Gaps = 9/251 (3%) Query: 315 VYGELHWQNSHVSSSEPLLNSVSSMLGRGLY--FNQAQKHFQQLLLMEERATIARELHDS 372 + G + W + L + R L Q + + + ER +A E+HDS Sbjct: 788 IVGLVEWSSRRARRRNLALEQLVRDRTRQLEKTMEQLNEETRNAATLAERNRLAGEIHDS 847 Query: 373 LAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTF-RLTLQQAD 431 L Q LS +QL + + +S + ++ +++ + L + Sbjct: 848 LQQGLSGAILQLDATLK-LRSVTGLVRSRLEVVRNMVSYTRHEVQHAVWDLESPLLADTE 906 Query: 432 LPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIA 491 L ALR++ + T AK+++D + L + + HLL+I +E NA++HA+A IA Sbjct: 907 LGEALRKLTGLINPGT-AKISIDVSGTPVPLPSATKHHLLRIAQETTTNAVRHASAQRIA 965 Query: 492 VSCVTAPDGNHTVYIRDNGIGIGEP---KEPEGHYGLNIMRERAERLGGTLTFSQPSGGG 548 + D + + D+G+G + GH+GL +R+RA +L G + G G Sbjct: 966 IQVDYQAD-VVALTVVDDGVGFEPDDVLSKSGGHFGLRGLRDRARKLEGEIEIHSLPGQG 1024 Query: 549 TLVSISFRSAE 559 T + +S Sbjct: 1025 TTIRVSVPLHP 1035 >UniRef50_B2JH43 PAS/PAC sensor signal transduction histidine kinase n=1 Tax=Burkholderia phymatum STM815 RepID=B2JH43_BURP8 Length = 493 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 78/394 (19%), Positives = 141/394 (35%), Gaps = 47/394 (11%) Query: 195 FDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCS 254 F + L E G LA F ++ +L + +E K L +++RL+ + Sbjct: 108 FWASVLVIAQQREQGDLA-GFAAVTHDLSQ-----RQLIEAK---LRRSEQRLQAMID-- 156 Query: 255 QALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWR--------ISEGQPNPELPMQI 306 + + ++ N A+ +E E + + Sbjct: 157 ---SVEDYAIFMLSPTGEVTSWNTGAQRIEGYCAGEIIGRHFSVFYPPEARTAGLPERML 213 Query: 307 LPVTMQETVY---------GELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQ--- 354 + Q G W ++ ++ ++ + ++ Q Sbjct: 214 ETASTQGRSEAEGWRVRSDGSRFWADAIITPIRDDKGALQGFAKVTRDLTEHKRLEQLEH 273 Query: 355 --------QLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMAD-- 404 + EE+ IARELHD L Q L+ L++ +L++ + + TA++ Sbjct: 274 VGELAAATERAREEEKKRIARELHDDLGQQLTALKMSAVILQQDVEAGHYTAETAAKARG 333 Query: 405 FSQALNDAYRQLRELLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALD 463 +D LR + + R T L L A+ + D + K + LA Sbjct: 334 LVVQADDTMSALRRIASNLRPTMLDDLGLLPAVEWLADEFSRRYGIKASTRLSAGELAFS 393 Query: 464 AQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIG-EPKEPEGH 522 + +I++EA+ N +HA A+E+ V+ D V I DNG G P + Sbjct: 394 DTASTAIFRIVQEALTNVARHACATEVVVTIE-LDDNACEVRIDDNGRGAASAPGDKPDS 452 Query: 523 YGLNIMRERAERLGGTLTFSQPSGGGTLVSISFR 556 +GL +RER +L GT++ G V I F Sbjct: 453 FGLLGIRERVRQLNGTVSLGNRLDRGFRVQIRFP 486 >UniRef50_B2GCM4 Two-component sensor histidine kinase n=8 Tax=Lactobacillus RepID=B2GCM4_LACF3 Length = 355 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 72/305 (23%), Positives = 127/305 (41%), Gaps = 15/305 (4%) Query: 267 FRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETVYGELHWQNSHV 326 ++ ++ A + + + + I P +P+ + P Y ++ S Sbjct: 45 LDYLQELAHTAIAQQQSKADGCYDCEIMNQLPELTVPVDLPPDHTNPLRYTMVYRVLSPT 104 Query: 327 SSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLL--------MEERATIARELHDSLAQVLS 378 L + L R ++A + QQ +L +ER I+++LHDS+AQ + Sbjct: 105 DQVYALELKSRATLDRA-TLDRATQVAQQRMLNQYVNRAYEDERKRISQDLHDSIAQGVY 163 Query: 379 YLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLT-LQQADLPSALR 437 + + LK ++ Q + L+D R+++E+ R + L L +A+R Sbjct: 164 SAIMGVRRLKSEQLDEPER-QQVSTMIETQLDDTLREVKEMALDIRPSVLDSFGLVAAIR 222 Query: 438 EMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTA 497 + L + + + + T L +Q L +I +EA+ NA+KHAN +EI V V Sbjct: 223 ALAKRLTENSGVIIDVIGKADTSGLTTDVQSVLYRITQEAINNALKHANPTEITVMLVAH 282 Query: 498 PDGNHTVYIRDNGIGIGEPKEPE--GH-YGLNIMRERAERLGGTLTFSQPSGGGTLVSIS 554 ++ + DNG G GH GL M ER + L G+ G GT V++ Sbjct: 283 AH-YISLEVIDNGCGFDFQAHRGFNGHSLGLMNMSERVKALNGSFMIDSAPGQGTTVTVK 341 Query: 555 FRSAE 559 F E Sbjct: 342 FPVIE 346 >UniRef50_C6CT57 Histidine kinase n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CT57_PAESJ Length = 387 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 66/259 (25%), Positives = 108/259 (41%), Gaps = 22/259 (8%) Query: 315 VYGELHWQNSHVSSSEPLLNSVSSMLGRGL----------------YFNQAQKHFQQLLL 358 +YG W + E L N + +ML L A +L + Sbjct: 124 LYGMEVWHYEETNGLEGLYNLLPAMLAVLLVPFVMFIGRRSRVLRAQLELANDEISRLSI 183 Query: 359 MEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRE 418 EER I+RELHD+L L+ + ++ L ++ I A+ + D A +Q+RE Sbjct: 184 QEERQRISRELHDTLGHTLTMITLKSELAEKLIAHHPDRAKQEIRDVQLTSRAALKQVRE 243 Query: 419 LLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAV 478 L+T Q +L +A R + + + + +L + L +REAV Sbjct: 244 LVTGMNTVTLQDELSNAKRILAAAF-----ITIKVQGDPASASLSPLIDNMLGMCLREAV 298 Query: 479 LNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGT 538 N +KH+ A + + PD + + IRDNG+G + H GL M+ER + G Sbjct: 299 TNVVKHSEARQCVIEWAVTPD-QYRLAIRDNGVGCNLADKGPAHNGLRGMQERLNLVDGK 357 Query: 539 LTFSQPSGGGTLVSISFRS 557 L F G G++++I Sbjct: 358 LEFKSAKGSGSVITIIVPR 376 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P27896 Nitrate/nitrite sensor protein narQ n=113 Tax=En... 551 e-155 UniRef50_Q5E3J3 Sensory histidine kinase in two-component regula... 487 e-136 UniRef50_A8GHJ7 Integral membrane sensor signal transduction his... 479 e-133 UniRef50_D0IAW0 Nitrate/nitrite sensor protein n=3 Tax=Gammaprot... 472 e-131 UniRef50_A5EZZ3 Nitrate/nitrite sensor protein NarQ n=51 Tax=Vib... 463 e-129 UniRef50_A7JYP2 Histidine kinase domain protein n=7 Tax=Vibrio R... 461 e-128 UniRef50_Q2C653 Hypothetical nitrate/nitrite sensor protein NarQ... 460 e-128 UniRef50_C5S0V3 Nitrate/nitrite sensor protein NarQ n=6 Tax=Gamm... 459 e-127 UniRef50_P44604 Sensor protein narQ homolog n=30 Tax=Gammaproteo... 453 e-126 UniRef50_A4VHY8 Two-component sensor NarX n=3 Tax=Pseudomonas Re... 438 e-121 UniRef50_A0KIL7 Nitrate/nitrite sensor histidine kinase NarQ n=2... 428 e-118 UniRef50_B4EWG1 Nitrate/nitrite teo-component system, sensor kin... 422 e-116 UniRef50_B8EB80 Histidine kinase n=20 Tax=Shewanella RepID=B8EB8... 416 e-114 UniRef50_C4GHV1 Putative uncharacterized protein n=1 Tax=Kingell... 416 e-114 UniRef50_A6FC55 Hypothetical nitrate/nitrite sensor protein NarQ... 413 e-114 UniRef50_B2Q6G3 Putative uncharacterized protein n=3 Tax=Enterob... 413 e-114 UniRef50_C7RBW7 Histidine kinase n=1 Tax=Kangiella koreensis DSM... 413 e-113 UniRef50_A4TJU9 Nitrate/nitrite sensor protein n=29 Tax=Enteroba... 411 e-113 UniRef50_B7UUR7 Two-component sensor NarX n=7 Tax=Gammaproteobac... 410 e-113 UniRef50_B4TXT2 Nitrate/nitrite sensor protein NarX n=69 Tax=Ent... 410 e-113 UniRef50_Q2SF45 Signal transduction histidine kinase, nitrate/ni... 410 e-112 UniRef50_Q3SJ17 Periplasmic Sensor Signal Transduction Histidine... 408 e-112 UniRef50_P0AFA3 Nitrate/nitrite sensor protein narX n=127 Tax=Ga... 405 e-111 UniRef50_A8FUN8 Two-component sensor NarX n=3 Tax=Shewanella Rep... 405 e-111 UniRef50_Q0A9X9 Signal transduction histidine kinase, nitrate/ni... 405 e-111 UniRef50_A1U593 Integral membrane sensor signal transduction his... 403 e-110 UniRef50_A4BGQ5 Signal transduction histidine kinase, nitrate/ni... 403 e-110 UniRef50_Q0HUB7 Signal transduction histidine kinase, nitrate/ni... 402 e-110 UniRef50_Q5NYZ8 Nitrate/nitrite sensor kinase n=1 Tax=Aromatoleu... 401 e-110 UniRef50_Q5QWJ9 Nitrate/nitrite sensor histidine kinase n=1 Tax=... 399 e-109 UniRef50_Q9F0Y0 Nitrate/nitrite sensor protein n=1 Tax=Pseudomon... 398 e-109 UniRef50_Q47HU2 GAF:ATP-binding region, ATPase-like:Histidine ki... 393 e-107 UniRef50_B4RLW4 NarX/NarQ n=17 Tax=Neisseria RepID=B4RLW4_NEIG2 393 e-107 UniRef50_A4G5M3 Putative Nitrate/nitrite sensor protein narX n=1... 390 e-107 UniRef50_Q4FU45 Signal transduction histidine kinase sensor n=2 ... 390 e-107 UniRef50_C7I506 GAF sensor signal transduction histidine kinase ... 389 e-106 UniRef50_A6D1I3 Signal transduction histidine kinase, nitrate/ni... 388 e-106 UniRef50_B4S080 Signal transduction histidine kinase, nitrate/ni... 387 e-106 UniRef50_C5T4I9 GAF sensor signal transduction histidine kinase ... 386 e-105 UniRef50_B2CI54 Integral membrane sensor signal transduction his... 385 e-105 UniRef50_Q7NV12 Transmembrane nitrate/nitrite sensor kinase tran... 385 e-105 UniRef50_C0DXB9 Putative uncharacterized protein n=1 Tax=Eikenel... 385 e-105 UniRef50_A1W358 Signal transduction histidine kinase, nitrate/ni... 383 e-104 UniRef50_Q8VUK2 Putative nitrate/nitrite sensor protein n=1 Tax=... 382 e-104 UniRef50_C4KA07 GAF sensor signal transduction histidine kinase ... 380 e-104 UniRef50_C1D9F9 NarX n=1 Tax=Laribacter hongkongensis HLHK9 RepI... 379 e-103 UniRef50_A9LZC9 Two-component system, NarL family, nitrate/nitri... 374 e-102 UniRef50_A2SGG0 Signal transduction histidine kinase, nitrate/ni... 370 e-101 UniRef50_B9Z081 Multi-sensor signal transduction histidine kinas... 365 3e-99 UniRef50_Q5P3L3 Nitrate/nitrite TWO-component sensor NARX n=1 Ta... 364 6e-99 UniRef50_C0DXM5 Sensor protein n=1 Tax=Eikenella corrodens ATCC ... 363 8e-99 UniRef50_Q46R21 GAF:ATP-binding region, ATPase-like:Histidine ki... 363 1e-98 UniRef50_Q1ZGB4 Nitrate/nitrite sensor protein n=1 Tax=Psychromo... 360 8e-98 UniRef50_C4K985 Histidine kinase n=1 Tax=Thauera sp. MZ1T RepID=... 343 2e-92 UniRef50_A8VTE1 Short-chain dehydrogenase/reductase SDR n=1 Tax=... 313 1e-83 UniRef50_C0N1R0 Histidine kinase domain protein n=1 Tax=Methylop... 304 4e-81 UniRef50_Q1H473 Signal transduction histidine kinase, nitrate/ni... 291 5e-77 UniRef50_Q2Y9N2 Periplasmic sensor signal transduction histidine... 283 1e-74 UniRef50_B8GUD0 GAF sensor signal transduction histidine kinase ... 282 2e-74 UniRef50_C0N6H4 Putative uncharacterized protein n=1 Tax=Methylo... 266 2e-69 UniRef50_Q67S65 Two-component sensor histidine kinase n=1 Tax=Sy... 262 2e-68 UniRef50_C6XAG1 Histidine kinase n=1 Tax=Methylovorus sp. SIP3-4... 262 3e-68 UniRef50_D1UN54 PAS/PAC sensor signal transduction histidine kin... 261 5e-68 UniRef50_A7BTT3 Sensory transduction histidine kinase n=1 Tax=Be... 260 1e-67 UniRef50_B2AKD3 Putative multi-sensor signal transduction histid... 258 5e-67 UniRef50_A3DEX1 Histidine kinase n=5 Tax=Clostridium RepID=A3DEX... 257 1e-66 UniRef50_B7AAT7 Histidine kinase n=1 Tax=Thermus aquaticus Y51MC... 256 2e-66 UniRef50_Q7NE94 Glr3986 protein n=1 Tax=Gloeobacter violaceus Re... 256 2e-66 UniRef50_D1C6S2 Histidine kinase n=1 Tax=Sphaerobacter thermophi... 254 6e-66 UniRef50_B8FFK0 PAS/PAC sensor signal transduction histidine kin... 254 8e-66 UniRef50_Q1H0K4 Multi-sensor signal transduction histidine kinas... 252 2e-65 UniRef50_Q1AZP1 Periplasmic sensor signal transduction histidine... 252 2e-65 UniRef50_D1C419 Histidine kinase n=1 Tax=Sphaerobacter thermophi... 251 4e-65 UniRef50_B2TAX2 PAS/PAC sensor signal transduction histidine kin... 251 4e-65 UniRef50_D1CB59 GAF sensor signal transduction histidine kinase ... 251 4e-65 UniRef50_Q025Z0 Histidine kinase n=1 Tax=Candidatus Solibacter u... 248 4e-64 UniRef50_B8D0J3 Histidine kinase n=2 Tax=Clostridia RepID=B8D0J3... 246 2e-63 UniRef50_Q3M1D8 Serine/threonine protein kinase and signal trans... 245 4e-63 UniRef50_B2JVQ4 Integral membrane sensor signal transduction his... 244 6e-63 UniRef50_D1CE67 Multi-sensor signal transduction histidine kinas... 244 7e-63 UniRef50_C6CGT0 PAS/PAC sensor signal transduction histidine kin... 244 8e-63 UniRef50_C4XMF3 Two-component sensor histidine kinase n=1 Tax=De... 244 8e-63 UniRef50_B6JD37 Signal transduction histidine kinase containing ... 244 1e-62 UniRef50_Q1IXN3 Periplasmic sensor signal transduction histidine... 243 1e-62 UniRef50_B4WPC3 GAF domain protein n=1 Tax=Synechococcus sp. PCC... 243 2e-62 UniRef50_Q3SJC2 Multi-sensor Signal Transduction Histidine Kinas... 242 2e-62 UniRef50_D1C9Z9 GAF sensor signal transduction histidine kinase ... 242 3e-62 UniRef50_B2VGC1 HrpX protein (Hrp cluster) n=6 Tax=Enterobacteri... 242 4e-62 UniRef50_C6D0G7 GAF sensor signal transduction histidine kinase ... 241 5e-62 UniRef50_B9LCJ4 GAF sensor signal transduction histidine kinase ... 241 6e-62 UniRef50_A6SXZ6 Two-component sensor histidine kinase n=2 Tax=Ox... 241 6e-62 UniRef50_C5V7S2 PAS/PAC sensor signal transduction histidine kin... 241 7e-62 UniRef50_B0K3K4 Histidine kinase n=11 Tax=Thermoanaerobacterales... 240 8e-62 UniRef50_A5FQK5 Multi-sensor signal transduction histidine kinas... 240 1e-61 UniRef50_B9XSI9 Multi-sensor signal transduction histidine kinas... 240 2e-61 UniRef50_B8CZJ7 Integral membrane sensor signal transduction his... 239 2e-61 UniRef50_Q5SJ33 Sensor histidine kinase n=3 Tax=Thermus RepID=Q5... 239 3e-61 UniRef50_B2T8J5 Multi-sensor signal transduction histidine kinas... 239 3e-61 UniRef50_Q67RQ8 Two-component system sensor kinase n=1 Tax=Symbi... 238 4e-61 UniRef50_A6SWF1 Sensory box histidine kinase n=1 Tax=Janthinobac... 238 4e-61 UniRef50_D1C657 GAF sensor signal transduction histidine kinase ... 238 5e-61 UniRef50_A5UUR7 Multi-sensor signal transduction histidine kinas... 237 1e-60 UniRef50_Q1CZ92 Sensor histidine kinase n=1 Tax=Myxococcus xanth... 237 1e-60 UniRef50_C5SBA0 Histidine kinase n=1 Tax=Allochromatium vinosum ... 236 1e-60 UniRef50_C1F9F5 Two component regulator propeller/histidine kina... 235 2e-60 UniRef50_A9B046 Integral membrane sensor signal transduction his... 235 3e-60 UniRef50_A9B363 Integral membrane sensor signal transduction his... 235 4e-60 UniRef50_C5AIA0 Multi-sensor signal transduction histidine kinas... 235 4e-60 UniRef50_Q2SUK5 Two-component hybrid sensor and regulator n=33 T... 234 7e-60 UniRef50_C6P6J2 PAS/PAC sensor signal transduction histidine kin... 234 7e-60 UniRef50_B8G147 Multi-sensor signal transduction histidine kinas... 234 7e-60 UniRef50_Q0KDJ4 Signal transduction histidine kinase containing ... 234 7e-60 UniRef50_B9XNW0 Multi-sensor signal transduction histidine kinas... 234 8e-60 UniRef50_Q2LRG0 Signal transduction histidine kinase n=1 Tax=Syn... 234 9e-60 UniRef50_A4XZI6 Multi-sensor signal transduction histidine kinas... 234 9e-60 UniRef50_UPI0001746019 hypothetical protein VspiD_01665 n=1 Tax=... 234 1e-59 UniRef50_Q47G83 PAS n=1 Tax=Dechloromonas aromatica RCB RepID=Q4... 233 1e-59 UniRef50_B9L060 Putative two component system histidine kinase n... 233 2e-59 UniRef50_Q1IWU8 Multi-sensor signal transduction histidine kinas... 233 2e-59 UniRef50_O32198 Sensor histidine kinase liaS n=5 Tax=Bacillus Re... 232 2e-59 UniRef50_C4DRB4 Signal transduction histidine kinase, COG4585 n=... 232 3e-59 UniRef50_D2B7Q9 Histidine kinase n=1 Tax=Streptosporangium roseu... 232 3e-59 UniRef50_Q67QY8 Two-component sensor histidine kinase n=1 Tax=Sy... 232 3e-59 UniRef50_C6E3E0 PAS/PAC sensor signal transduction histidine kin... 231 4e-59 UniRef50_C1CWD4 Putative histidine kinase, classic; putative mem... 231 5e-59 UniRef50_Q1ASU9 GAF sensor signal transduction histidine kinase ... 231 5e-59 UniRef50_B0C7C8 GAF domain protein n=1 Tax=Acaryochloris marina ... 231 6e-59 UniRef50_Q81FX4 Two-component sensor protein yvqE n=44 Tax=Bacil... 230 8e-59 UniRef50_C6QH09 Histidine kinase n=1 Tax=Hyphomicrobium denitrif... 230 1e-58 UniRef50_Q7N5B4 Similar to nitrate/nitrite sensor protein NarX n... 230 1e-58 UniRef50_B4D830 Integral membrane sensor signal transduction his... 230 1e-58 UniRef50_B3U4S0 Response regulator receiver n=1 Tax=Candidatus N... 230 2e-58 UniRef50_C1YIX9 Signal transduction histidine kinase, COG4585 n=... 229 2e-58 UniRef50_B8HT67 GAF sensor signal transduction histidine kinase ... 229 2e-58 UniRef50_B1ZR83 Integral membrane sensor signal transduction his... 229 3e-58 UniRef50_A9WFF8 Histidine kinase dimerisation and phosphoaccepto... 229 3e-58 UniRef50_C6BTX2 GAF sensor signal transduction histidine kinase ... 229 3e-58 UniRef50_Q67MG9 Sensor protein n=1 Tax=Symbiobacterium thermophi... 229 3e-58 UniRef50_Q8YV44 Two-component sensor histidine kinase n=3 Tax=Cy... 229 3e-58 UniRef50_Q2B2D2 Two-component sensor histidine kinase n=2 Tax=Ba... 229 3e-58 UniRef50_Q0AF09 Multi-sensor signal transduction histidine kinas... 228 4e-58 UniRef50_Q47FQ9 Response regulator receiver:ATP-binding region, ... 228 4e-58 UniRef50_C1XTQ5 PAS domain S-box protein n=1 Tax=Meiothermus sil... 228 4e-58 UniRef50_B8G173 Histidine kinase n=2 Tax=Desulfitobacterium hafn... 228 5e-58 UniRef50_B9XSJ3 Multi-sensor signal transduction histidine kinas... 228 5e-58 UniRef50_B8G136 Sensor protein n=1 Tax=Desulfitobacterium hafnie... 228 5e-58 UniRef50_A7NRQ7 Integral membrane sensor signal transduction his... 227 6e-58 UniRef50_B5I2X6 Two-component system sensor kinase n=10 Tax=Stre... 227 6e-58 UniRef50_B8FX95 Sensor DegS domain protein n=3 Tax=cellular orga... 227 6e-58 UniRef50_B1YLL4 Histidine kinase n=2 Tax=Exiguobacterium RepID=B... 227 7e-58 UniRef50_UPI0001693FB4 two-component sensor histidine kinase of ... 227 7e-58 UniRef50_B9TKD1 Putative uncharacterized protein (Fragment) n=1 ... 227 8e-58 UniRef50_Q45827 Uncharacterized sensor-like histidine kinase Cau... 227 8e-58 UniRef50_B4CYV7 Histidine kinase n=1 Tax=Chthoniobacter flavus E... 227 9e-58 UniRef50_B4UAL2 Integral membrane sensor signal transduction his... 227 1e-57 UniRef50_D2B2V1 Histidine kinase n=1 Tax=Streptosporangium roseu... 226 1e-57 UniRef50_C1XM57 Signal transduction histidine kinase, COG4585 n=... 226 2e-57 UniRef50_A6CIM0 Multi-sensor signal transduction histidine kinas... 226 2e-57 UniRef50_C0ZJS5 Two-component sensor histidine kinase n=1 Tax=Br... 226 2e-57 UniRef50_C1XJE4 Histidine kinase n=2 Tax=Meiothermus RepID=C1XJE... 226 2e-57 UniRef50_A1AUQ4 PAS/PAC sensor signal transduction histidine kin... 225 3e-57 UniRef50_C6J152 Histidine kinase dimerization and phosphoaccepto... 225 4e-57 UniRef50_B0TH54 Sensor histidine kinase, putative n=1 Tax=Heliob... 225 4e-57 UniRef50_D2BHE9 Sensor histidine kinase n=5 Tax=Dehalococcoides ... 225 4e-57 UniRef50_A9WAP8 ATP-binding region ATPase domain protein n=3 Tax... 225 4e-57 UniRef50_C5UZV3 PAS/PAC sensor signal transduction histidine kin... 224 5e-57 UniRef50_Q13H12 PAS/PAC sensor signal transduction histidine kin... 224 6e-57 UniRef50_Q5NZX5 Putative sensory protein, two-component system n... 224 7e-57 UniRef50_A5GBT2 Integral membrane sensor signal transduction his... 224 7e-57 UniRef50_A4J6C1 Histidine kinase n=2 Tax=Peptococcaceae RepID=A4... 224 8e-57 UniRef50_C9NJB7 GAF sensor signal transduction histidine kinase ... 224 8e-57 UniRef50_Q1D524 Sensor histidine kinase n=2 Tax=Cystobacterineae... 224 9e-57 UniRef50_B2A6W3 Integral membrane sensor signal transduction his... 224 1e-56 UniRef50_A6WW19 Integral membrane sensor signal transduction his... 224 1e-56 UniRef50_C9RWH5 Integral membrane sensor signal transduction his... 223 1e-56 UniRef50_A6GSY8 Sensory transduction histidine kinase n=1 Tax=Li... 223 1e-56 UniRef50_A1HU07 Integral membrane sensor signal transduction his... 223 1e-56 UniRef50_UPI00016AFAA4 response regulator/sensory box histidine ... 223 1e-56 UniRef50_C0Q8Z0 Two-component hybrid sensor and response regulat... 223 1e-56 UniRef50_B4D5C3 Histidine kinase n=1 Tax=Chthoniobacter flavus E... 223 1e-56 UniRef50_A7NG30 Multi-sensor signal transduction histidine kinas... 223 1e-56 UniRef50_C8NE28 Sensor histidine kinase n=1 Tax=Granulicatella a... 223 2e-56 UniRef50_P54663 Sensor protein degS n=33 Tax=Bacillales RepID=DE... 222 2e-56 UniRef50_C6XAR1 PAS/PAC sensor signal transduction histidine kin... 222 2e-56 UniRef50_B4D6U9 Multi-sensor signal transduction histidine kinas... 222 2e-56 UniRef50_C6NZS6 Multi-sensor signal transduction histidine kinas... 222 3e-56 UniRef50_UPI0001B54FA0 histidine kinase n=1 Tax=Streptomyces sp.... 222 3e-56 UniRef50_C0Z627 Two-component sensor histidine kinase n=3 Tax=Ba... 222 3e-56 UniRef50_A9B1S5 Multi-sensor signal transduction histidine kinas... 222 3e-56 UniRef50_B2J8K5 Integral membrane sensor signal transduction his... 222 3e-56 UniRef50_C6WV68 PAS/PAC sensor signal transduction histidine kin... 222 4e-56 UniRef50_B5JKT1 Histidine kinase domain protein n=1 Tax=Verrucom... 221 5e-56 UniRef50_D1CAA4 GAF sensor signal transduction histidine kinase ... 221 5e-56 UniRef50_UPI00017893B7 integral membrane sensor signal transduct... 221 5e-56 UniRef50_C6J7D3 ATP-binding region ATPase domain-containing prot... 221 5e-56 UniRef50_B2J8J6 Multi-sensor signal transduction histidine kinas... 221 6e-56 UniRef50_Q9KDL3 Two-component sensor histidine kinase n=1 Tax=Ba... 221 6e-56 UniRef50_D2SEJ2 Integral membrane sensor signal transduction his... 221 6e-56 UniRef50_Q01N85 Integral membrane sensor signal transduction his... 221 7e-56 UniRef50_Q747N5 Sensory box histidine kinase n=2 Tax=Geobacter R... 221 7e-56 UniRef50_C5CVV4 Histidine kinase n=2 Tax=Burkholderiales RepID=C... 221 7e-56 UniRef50_Q0B944 Multi-sensor signal transduction histidine kinas... 220 8e-56 UniRef50_D1VK31 Histidine kinase n=1 Tax=Frankia sp. EuI1c RepID... 220 9e-56 UniRef50_A6TSW3 Histidine kinase n=2 Tax=Alkaliphilus RepID=A6TS... 220 1e-55 UniRef50_C8WYI2 Histidine kinase n=2 Tax=Alicyclobacillus acidoc... 220 1e-55 UniRef50_A3NKQ6 Signal transduction histidine kinase n=29 Tax=Bu... 220 1e-55 UniRef50_B5JFN8 Histidine kinase domain protein n=1 Tax=Verrucom... 220 2e-55 UniRef50_D2ARZ7 Histidine kinase n=1 Tax=Streptosporangium roseu... 219 2e-55 UniRef50_UPI0001B54039 histidine kinase n=1 Tax=Streptomyces sp.... 219 2e-55 UniRef50_UPI00017449FC GAF domain protein n=1 Tax=Verrucomicrobi... 219 2e-55 UniRef50_A8LRP9 Integral membrane sensor signal transduction his... 219 3e-55 UniRef50_C0GKL6 Histidine kinase n=1 Tax=Dethiobacter alkaliphil... 219 3e-55 UniRef50_Q1AVR5 Periplasmic sensor signal transduction histidine... 219 3e-55 UniRef50_UPI000169369A sensor histidine kinase n=1 Tax=Paenibaci... 219 4e-55 UniRef50_B1ZSZ0 Histidine kinase n=1 Tax=Opitutus terrae PB90-1 ... 218 4e-55 UniRef50_C3PKA7 Two-component system sensor kinase n=2 Tax=Coryn... 218 4e-55 UniRef50_Q5WCK2 Two-component sensor histidine kinase n=1 Tax=Ba... 218 5e-55 UniRef50_Q01NC5 Integral membrane sensor signal transduction his... 218 6e-55 UniRef50_B0UCY8 Integral membrane sensor signal transduction his... 218 6e-55 UniRef50_C2C0V0 Possible histidine kinase n=5 Tax=Listeria RepID... 217 7e-55 UniRef50_B4WQU2 GAF domain protein n=1 Tax=Synechococcus sp. PCC... 217 8e-55 UniRef50_C1YH63 Signal transduction histidine kinase, COG4585 n=... 217 8e-55 UniRef50_Q24Z69 Putative uncharacterized protein n=1 Tax=Desulfi... 217 8e-55 UniRef50_A5EGA4 Bacteriophytochrome n=13 Tax=Rhizobiales RepID=A... 217 1e-54 UniRef50_B2TG29 PAS/PAC sensor signal transduction histidine kin... 217 1e-54 UniRef50_C5C2U0 Histidine kinase n=2 Tax=Actinomycetales RepID=C... 217 1e-54 UniRef50_D0BKY9 Sensor histidine kinase VraS n=1 Tax=Granulicate... 216 2e-54 UniRef50_B1XZ31 Histidine kinase n=5 Tax=cellular organisms RepI... 216 2e-54 UniRef50_B2JH43 PAS/PAC sensor signal transduction histidine kin... 216 2e-54 UniRef50_UPI0001C312DE integral membrane sensor signal transduct... 216 2e-54 UniRef50_B8HNY8 Histidine kinase n=1 Tax=Cyanothece sp. PCC 7425... 216 2e-54 UniRef50_Q1IIL1 GAF sensor signal transduction histidine kinase ... 216 2e-54 UniRef50_B9TG52 Putative uncharacterized protein n=1 Tax=Ricinus... 216 2e-54 UniRef50_Q0RWJ5 Sensor kinase, two-component system n=7 Tax=Rhod... 216 2e-54 UniRef50_D1AAA6 Histidine kinase n=1 Tax=Thermomonospora curvata... 216 2e-54 UniRef50_B2A8K7 Histidine kinase n=1 Tax=Natranaerobius thermoph... 215 3e-54 UniRef50_Q67JE7 Two-component sensor histidine kinase n=1 Tax=Sy... 215 3e-54 UniRef50_B5JLS1 Histidine kinase domain protein n=1 Tax=Verrucom... 215 3e-54 UniRef50_B1Z4G8 Multi-sensor signal transduction histidine kinas... 215 3e-54 UniRef50_B2GCM4 Two-component sensor histidine kinase n=8 Tax=La... 215 3e-54 UniRef50_D2WA17 NirW n=1 Tax=Methylomonas sp. 16a RepID=D2WA17_9... 215 4e-54 UniRef50_D2T798 Sensor for nitrate reductase system, protein his... 215 5e-54 UniRef50_B4D2I1 Histidine kinase n=1 Tax=Chthoniobacter flavus E... 214 7e-54 UniRef50_Q4ZMH3 PAS n=6 Tax=Pseudomonas RepID=Q4ZMH3_PSEU2 214 7e-54 UniRef50_A9WKI6 ATP-binding region ATPase domain protein n=3 Tax... 214 7e-54 UniRef50_Q0S8Z4 Sensor kinase, two-component system n=2 Tax=Rhod... 214 8e-54 UniRef50_B2J2K6 Integral membrane sensor signal transduction his... 214 8e-54 UniRef50_Q2RJV0 Histidine kinase n=1 Tax=Moorella thermoacetica ... 213 9e-54 Sequences not found previously or not previously below threshold: UniRef50_C0GH42 Multi-sensor signal transduction histidine kinas... 215 4e-54 UniRef50_Q814L6 Two-component sensor protein yhcY n=40 Tax=Bacil... 215 4e-54 >UniRef50_P27896 Nitrate/nitrite sensor protein narQ n=113 Tax=Enterobacteriaceae RepID=NARQ_ECOLI Length = 566 Score = 551 bits (1420), Expect = e-155, Method: Composition-based stats. Identities = 566/566 (100%), Positives = 566/566 (100%) Query: 1 MIVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDL 60 MIVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDL Sbjct: 1 MIVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDL 60 Query: 61 QSGSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPW 120 QSGSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPW Sbjct: 61 QSGSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPW 120 Query: 121 YQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPL 180 YQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPL Sbjct: 121 YQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPL 180 Query: 181 NQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDL 240 NQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDL Sbjct: 181 NQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDL 240 Query: 241 HEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNP 300 HEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNP Sbjct: 241 HEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNP 300 Query: 301 ELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLME 360 ELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLME Sbjct: 301 ELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLME 360 Query: 361 ERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELL 420 ERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELL Sbjct: 361 ERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELL 420 Query: 421 TTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLN 480 TTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLN Sbjct: 421 TTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLN 480 Query: 481 AMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLT 540 AMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLT Sbjct: 481 AMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLT 540 Query: 541 FSQPSGGGTLVSISFRSAEGEESQLM 566 FSQPSGGGTLVSISFRSAEGEESQLM Sbjct: 541 FSQPSGGGTLVSISFRSAEGEESQLM 566 >UniRef50_Q5E3J3 Sensory histidine kinase in two-component regulatory system with NarP (NarL) n=3 Tax=Aliivibrio RepID=Q5E3J3_VIBF1 Length = 563 Score = 487 bits (1254), Expect = e-136, Method: Composition-based stats. Identities = 225/558 (40%), Positives = 339/558 (60%), Gaps = 8/558 (1%) Query: 7 VSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQSGSPQ 66 ++ ++A+ IV++SI++T +AL+TL+SSL+DAEA+NIAGSLRMQSYRL YD+++ SP+ Sbjct: 9 LTRTIAQVMLLIVMISIITTSLALITLSSSLKDAEAVNIAGSLRMQSYRLAYDIETNSPE 68 Query: 67 LNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPWYQANIN 126 L H F Q++ SP +L+ W+VP+ ++ Y + WL + L + Y ++ Sbjct: 69 LIEHLDKFSQSIESPSFKSLDQWFVPDDIEDYYEDIRLQWLSLQPSLLSDNKQIYLNKVS 128 Query: 127 NYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTA 186 +V++ID FV LQ ++ERK+ L+ I G I F + + ++V+PL+ LV A Sbjct: 129 LFVDEIDHFVFRLQEFSERKLQLLSLIGALGLSLIVFSSIFIIFFTQRKIVSPLHHLVAA 188 Query: 187 SQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRR 246 S + G + +D N NELG L FN M+ ++ YR LE+ VE+KT+ L +A R Sbjct: 189 SHAMTKGNYS-VQVDLNSDNELGQLGNAFNHMTRQVDLSYRELESRVEDKTKKLSQANRS 247 Query: 247 LEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGE----NWRISEGQPNPEL 302 L +LYQCSQ L+ SQ+D F++IL + E L V E +W I+ G+P+ E Sbjct: 248 LMILYQCSQQLSASQLDEQAFKNILDTFTNIEGIISARLIVEEESGGDWEITSGEPD-ES 306 Query: 303 PMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEER 362 P + + + G L WQ S + L+ ++S++L RG+++NQAQK QL+L+EER Sbjct: 307 PWSLQELCIDGEQLGYLLWQESLPCPDQKLIINISNILARGIFYNQAQKQTHQLILLEER 366 Query: 363 ATIARELHDSLAQVLSYLRIQLTLLKRSIPE-DNATAQSIMADFSQALNDAYRQLRELLT 421 +TIARELHDSLAQ LSYL+IQ TLLKR + + D + + + + L AY QLR LL Sbjct: 367 STIARELHDSLAQSLSYLKIQTTLLKRQLEKCDCINTSTTLVELDEGLKSAYSQLRGLLN 426 Query: 422 TFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNA 481 TFRLT+ +A AL+E++ TL +QT + L+ LP+L ++AQ VHLLQ+IREA LNA Sbjct: 427 TFRLTINKAHFGEALQEIMTTLASQTKINIHLNNELPSLPINAQQHVHLLQLIREATLNA 486 Query: 482 MKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTF 541 +KH+ A I ++C + + I D+G+G +E HYGL IM+ERA + G L+ Sbjct: 487 IKHSKADNIIITCFQEGEQGC-INIEDDGVGFDPTEEKINHYGLRIMQERANCVHGKLSI 545 Query: 542 SQPSGGGTLVSISFRSAE 559 + G V++ F + Sbjct: 546 TSEIDNGCTVNVMFPLNQ 563 >UniRef50_A8GHJ7 Integral membrane sensor signal transduction histidine kinase n=3 Tax=Enterobacteriaceae RepID=A8GHJ7_SERP5 Length = 560 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 304/560 (54%), Positives = 388/560 (69%), Gaps = 3/560 (0%) Query: 1 MIVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDL 60 M+VKR V++SLA+A F IV+LS+LSTG+AL T+A SLRDAEA+NIAGSLRMQSYRL YDL Sbjct: 1 MLVKRSVTSSLAKALFCIVILSVLSTGLALTTVADSLRDAEAVNIAGSLRMQSYRLAYDL 60 Query: 61 QSGSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPW 120 +P+L H ++Q+L +P L L+ +YVP V+ +Y L W + ++ G Sbjct: 61 TGPAPELEQHLLQYRQSLQAPALQKLDRFYVPAEVREKYLSLQHAWQPLAQQIQAGQSAD 120 Query: 121 YQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPL 180 YQANI YVNQID FVLALQ Y+E K+ +V AIS+ G I I LV F +R +R QVVAPL Sbjct: 121 YQANIAGYVNQIDHFVLALQRYSELKLTIVAAISVLGFIAIIGLVLFCIRFMRRQVVAPL 180 Query: 181 NQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDL 240 LV ASQR++ F+ PPLDT LPNELG+L++ F MS +L KLY SLE V+EKT+ L Sbjct: 181 KHLVDASQRVQQRDFNHPPLDTALPNELGVLSQAFTAMSGDLAKLYESLEQKVQEKTQRL 240 Query: 241 HEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGEN---WRISEGQ 297 +A + LEVLY CSQALN QID F IL IVR +E + LNV ++ W++ G+ Sbjct: 241 QQANKTLEVLYNCSQALNVRQIDQQAFEKILHIVRQSEDLHCIRLNVADSLSEWQLRSGR 300 Query: 298 PNPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLL 357 P+P L Q L + + GEL WQ+ L+ SV++ML RG+YFN+AQK Q L Sbjct: 301 PSPTLAWQSLTIIQGDKPLGELSWQHKEQPPHPHLMQSVANMLSRGVYFNRAQKQHMQFL 360 Query: 358 LMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLR 417 LMEERATIARELHDSLAQ LS+LRIQLTLL+R++ + AQ I++DF QAL DAYRQLR Sbjct: 361 LMEERATIARELHDSLAQALSFLRIQLTLLRRTLADSTPEAQEIISDFDQALADAYRQLR 420 Query: 418 ELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREA 477 ELLTTFRL +Q+ADL +AL ++L L+ T A++ L CRL + AL+AQ QVH LQI+REA Sbjct: 421 ELLTTFRLNIQEADLNTALHQLLAPLKVLTDARIQLHCRLSSQALNAQQQVHALQIVREA 480 Query: 478 VLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGG 537 VLNA+KHA A EI + C +G++++ I D+G GI EPEGHYGL IM ERA RLGG Sbjct: 481 VLNAIKHAQAQEIVIRCEMTAEGDNSISIADDGCGIASLNEPEGHYGLTIMSERAARLGG 540 Query: 538 TLTFSQPSGGGTLVSISFRS 557 TL + GT V ++F Sbjct: 541 TLRIQRGEPDGTEVRLTFPP 560 >UniRef50_D0IAW0 Nitrate/nitrite sensor protein n=3 Tax=Gammaproteobacteria RepID=D0IAW0_VIBHO Length = 594 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 230/560 (41%), Positives = 333/560 (59%), Gaps = 8/560 (1%) Query: 1 MIVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDL 60 +IVK+ V+ +AR+ I+ L+++ TG A+ TLASSL DA AIN +GSLRMQSYR+ YD+ Sbjct: 35 IIVKQSVTTIVARSLIGILFLAVIITGFAIFTLASSLNDAAAINTSGSLRMQSYRMAYDI 94 Query: 61 QSGSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPW 120 +L H F+Q+L +P L L+ + VP+ ++ RY L W+++ L D + Sbjct: 95 VLAPSRLPGHIDNFEQSLLAPELRILDNFAVPDEIRERYHSLIERWIKLRPELESDDRAF 154 Query: 121 YQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPL 180 Y + +VN ID FV ALQ ++E K+ ++ + G I LV F ++ + ++V PL Sbjct: 155 YIEQVGLFVNDIDRFVFALQQHSENKLQVLAMVGSGGLGLILALVLFLIQYTQRRIVFPL 214 Query: 181 NQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDL 240 N LV ASQ+I++ +FD+ NELG+L+ +F M+SEL LY LE + KT+ L Sbjct: 215 NMLVKASQQIQNREFDAELPPAR-NNELGVLSNSFALMASELKGLYADLEHKITTKTQKL 273 Query: 241 HEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVG----ENWRISEG 296 +A + L +LY CS+ L+++ ++ F +L I + + + L L +W I+ G Sbjct: 274 TKANQSLNILYDCSKQLSSTFLNRESFERMLAITLNADGVKALSLQAHNKNQSDWEIAAG 333 Query: 297 QPNPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQL 356 P LP+ + +G L WQ + LL++++S+L RG+Y+N AQK L Sbjct: 334 FPEGG-EWFELPLILDGESFGTLKWQGNPDIVDNNLLSNLASILARGVYYNHAQKQAMHL 392 Query: 357 LLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIP-EDNATAQSIMADFSQALNDAYRQ 415 +MEERAT+ARELHDS+AQ LSYL+IQ +LLKR + + I D S+ L AY Q Sbjct: 393 AVMEERATLARELHDSIAQSLSYLKIQTSLLKRHLKLINAPDCNDIAHDISKQLRIAYDQ 452 Query: 416 LRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIR 475 LRELLT FRL+L D AL EM++TLQ QT+A LT+ L TL++DAQ Q+H+LQIIR Sbjct: 453 LRELLTAFRLSLSHGDFGLALHEMIETLQGQTTATLTVSSDLDTLSMDAQRQMHILQIIR 512 Query: 476 EAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERL 535 EA NA+KHA A I V C V I D+G+G +E HYGLNIM+ER+ L Sbjct: 513 EACSNAIKHAKAEHITVRCFQHSH-QARVDITDDGVGFSLIEEKPDHYGLNIMQERSSML 571 Query: 536 GGTLTFSQPSGGGTLVSISF 555 GG L + G V+++F Sbjct: 572 GGDLKITTAPEKGCQVTLTF 591 >UniRef50_A5EZZ3 Nitrate/nitrite sensor protein NarQ n=51 Tax=Vibrionales RepID=A5EZZ3_VIBC3 Length = 583 Score = 463 bits (1191), Expect = e-129, Method: Composition-based stats. Identities = 241/561 (42%), Positives = 344/561 (61%), Gaps = 12/561 (2%) Query: 3 VKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQS 62 V+ ++ ++A+A I+ LS L+TG+A++TLASSL DAEA+N++GS+RMQSYRL YD+Q+ Sbjct: 14 VRHSLTRTMAKAMLLILFLSALTTGVAIVTLASSLNDAEAVNVSGSMRMQSYRLAYDIQT 73 Query: 63 GSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPWYQ 122 S AH LF+ +L+SP + L W VP ++ Y L W E+ L+ Y Sbjct: 74 QSHDYKAHIFLFENSLYSPSMLALLDWTVPSDIQQDYYQLIERWHELKKVLNSDQKAQYL 133 Query: 123 ANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQ 182 + +V+ +D FVL LQ ++ERK++ + A+ G GIF + F + IR QVV PLN Sbjct: 134 DQVAPFVSLVDGFVLKLQRFSERKLIALAAVGSFGLGGIFAVSLFVVYYIREQVVRPLNA 193 Query: 183 LVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHE 242 +V AS++I++ FD L+ E+G+L++TFN M+ +L KLYR LE +V EKT L Sbjct: 194 MVDASEKIKNRNFD-VMLEETSSTEMGILSRTFNSMAGDLGKLYRGLEHAVNEKTNKLQM 252 Query: 243 AKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGEN----WRISEGQP 298 A + L+VLY SQ L S+I F+ IL+ E L L + E + EG+P Sbjct: 253 ANQSLQVLYHSSQELTASRITASNFQTILRHWVALEGICALRLEIEEEAGKPLILQEGKP 312 Query: 299 NPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLL 358 + + +Q P+T+ G L+W+ L+++ + +L R +Y+NQAQ+ +QLLL Sbjct: 313 SGAVMLQT-PLTLDGHHLGFLYWEAGSPEPDRALIDNFALILSRAIYYNQAQRQAEQLLL 371 Query: 359 MEERATIARELHDSLAQVLSYLRIQLTLLKRSI-----PEDNATAQSIMADFSQALNDAY 413 MEERATIARELHDSLAQ LSYL+IQLTLLKRS+ D + ++I+ + + L+DAY Sbjct: 372 MEERATIARELHDSLAQSLSYLKIQLTLLKRSVTPLKSDGDLSKTENIIREIDKGLSDAY 431 Query: 414 RQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQI 473 QLRELLTTFRLTL + +L ML L QT AK+ L+ L ++ALDA QVHL+Q+ Sbjct: 432 TQLRELLTTFRLTLTEGSFGQSLLGMLTQLSGQTDAKIELNNALSSIALDAHQQVHLVQL 491 Query: 474 IREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAE 533 IREA +NA+KHA A++I V+C G V I D+G+G HYG++IM+ERA Sbjct: 492 IREATINAIKHAKATKIKVNC-QEQQGRVQVTIEDDGVGFDLQDHKINHYGMSIMQERAA 550 Query: 534 RLGGTLTFSQPSGGGTLVSIS 554 RL G L G G V ++ Sbjct: 551 RLRGELKVESAPGKGCKVVLT 571 >UniRef50_A7JYP2 Histidine kinase domain protein n=7 Tax=Vibrio RepID=A7JYP2_VIBSE Length = 584 Score = 461 bits (1187), Expect = e-128, Method: Composition-based stats. Identities = 238/576 (41%), Positives = 348/576 (60%), Gaps = 14/576 (2%) Query: 3 VKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQS 62 VK+ V+ ++A A I+LLS+ +TG A+ TLASSL DAEA+N+AGS+RMQSYRL D+Q Sbjct: 11 VKKSVTRTIASAMLLILLLSVATTGFAIFTLASSLNDAEAVNVAGSMRMQSYRLANDIQV 70 Query: 63 GSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPWYQ 122 S ++H F+ +++SP + L W VPE + Y L W E+ + L + YQ Sbjct: 71 KSVDYSSHIDAFEHSIYSPSMKALQHWSVPEDITHDYYRLIMRWHELKSVLRGDNPAEYQ 130 Query: 123 ANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQ 182 + +V QID FV LQ ++E+K++ + I G GI + F + +R +VV PL Sbjct: 131 LLVAGFVKQIDEFVFKLQSFSEQKLINLAWIGGLGLGGILCVSMFVVHFVRLEVVRPLRA 190 Query: 183 LVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHE 242 LV AS++I++ F+ LD + NE+G+L +TFN+M+++L KLYR LE +V+EKTR L Sbjct: 191 LVFASEQIKNRSFN-ISLDVSSDNEMGILTRTFNRMATDLGKLYRGLEQAVDEKTRKLQH 249 Query: 243 AKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNV----GENWRISEG-- 296 A + LEVLY S+ L S+I+ F+ ILQ + E + ++L + +W + EG Sbjct: 250 ANQSLEVLYDSSKELTASRINQDNFQAILQHIASLEGIKAVKLEIEQLGEPSWILMEGEE 309 Query: 297 -QPNPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQ 355 + + +T+ G L+W+ +E L+++ +L R +Y+N+AQ+ +Q Sbjct: 310 CCHDCDEDCHSKALTLDGEHLGYLYWKAGLPCPNEALIDNFVQILSRAVYYNRAQRQAEQ 369 Query: 356 LLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDN-----ATAQSIMADFSQALN 410 +LLMEERATIARELHDSLAQ LSYL+IQ+ LLKRS+ A A ++A+ L+ Sbjct: 370 ILLMEERATIARELHDSLAQALSYLKIQVALLKRSVKNLPDEKAIAQANQVIAELDTGLS 429 Query: 411 DAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHL 470 AY QLRELLTTFRLT+++ AL++M++TL QT A +TL RL + LDA QVHL Sbjct: 430 AAYTQLRELLTTFRLTIKEGSFGQALQDMVETLNEQTVADITLKNRLSSTELDAHQQVHL 489 Query: 471 LQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRE 530 LQ+IREA +NA+KHA A I + C+ DG TV + D+GIG E HYG++IM+E Sbjct: 490 LQLIREAAINAIKHAQADNIHIQCL-DNDGKVTVTVTDDGIGFEHQDEKLNHYGMSIMQE 548 Query: 531 RAERLGGTLTFSQPSGGGTLVSISFRSAEGEESQLM 566 RA RL L G V + F+ ++ S + Sbjct: 549 RAARLHADLHIEASINKGCTVKLEFQHSKEVNSDSV 584 >UniRef50_Q2C653 Hypothetical nitrate/nitrite sensor protein NarQ n=2 Tax=Photobacterium RepID=Q2C653_9GAMM Length = 563 Score = 460 bits (1183), Expect = e-128, Method: Composition-based stats. Identities = 232/559 (41%), Positives = 342/559 (61%), Gaps = 9/559 (1%) Query: 5 RPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQSGS 64 ++ ++AR+ I+++SI++T +AL TL SS D EAINIAGSLRMQSYRL +D+++ S Sbjct: 8 HSLTTTIARSLVLILIISIVTTALALTTLVSSQNDVEAINIAGSLRMQSYRLAFDVETKS 67 Query: 65 PQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPWYQAN 124 P L+AH + F+ +L+S + L+ W + ++ Y H+ W +++ L + + + + Sbjct: 68 PLLSAHIEQFEHSLYSAPMKGLSYWLISSEIQQHYNHIVLRWEDLHPILERDNNTVFIQH 127 Query: 125 INNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLV 184 + +V++I+ FV LQ +E K+ + I + G IF +VF+T+R R Q+VAPLN LV Sbjct: 128 VAPFVHRINTFVAELQKSSELKLQRLAIIGVIGVSLIFLIVFYTIRYTRQQIVAPLNDLV 187 Query: 185 TASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAK 244 A ++++ F L+ N NELG+LA TF++MSS+L +LY+ LE SV EKT L A Sbjct: 188 DACKQVKRKNFRLDLLN-NSNNELGILAHTFSKMSSDLEQLYQGLERSVNEKTHRLRHAN 246 Query: 245 RRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGE----NWRISEGQPNP 300 L+VLY CSQ L+ S + F ++L+ + + +L + E I GQ Sbjct: 247 ESLQVLYNCSQQLSVSHLTRVQFTNMLETMIAIDGLIGAKLIIEEPNGSTSNIKVGQQAG 306 Query: 301 ELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLME 360 + Q + + + G+L WQ S + L+N++S +L R +Y+N+AQK + LLLME Sbjct: 307 QH-WQYNELYIDGELMGQLWWQYSLPCPDKALINNISQILARAIYYNRAQKQAEYLLLME 365 Query: 361 ERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDN--ATAQSIMADFSQALNDAYRQLRE 418 ERATIARELHDSLAQ LSYL+IQL LLKR + ++ + D L++AY QLRE Sbjct: 366 ERATIARELHDSLAQSLSYLKIQLALLKRELNQNAQNENTHQAVYDIEAGLSNAYTQLRE 425 Query: 419 LLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAV 478 LL+TFRL ++ A+ AL +ML+ L+ QT A L +D ++ ++ALDA QVHLLQIIREAV Sbjct: 426 LLSTFRLAIKDANFGEALNQMLEPLEEQTDALLIIDNQISSMALDAHNQVHLLQIIREAV 485 Query: 479 LNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGT 538 LNA+KHA+A EI V+C + + V I D+G G HYGLNIM+ERA RL G Sbjct: 486 LNAIKHADADEITVNCQQT-EQHIQVTIIDDGKGFDIKDSKRDHYGLNIMQERASRLQGK 544 Query: 539 LTFSQPSGGGTLVSISFRS 557 L G+ + + F Sbjct: 545 LKIQSGIDQGSAICLRFPL 563 >UniRef50_C5S0V3 Nitrate/nitrite sensor protein NarQ n=6 Tax=Gammaproteobacteria RepID=C5S0V3_9PAST Length = 572 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 242/558 (43%), Positives = 335/558 (60%), Gaps = 5/558 (0%) Query: 4 KRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQSG 63 K ++ + FF I+ + L +GI+L + S+ DA IN++GSLR QSYR Y++ Sbjct: 9 KNSIARRIGLYFFIIIGFATLISGISLGIMWSNKSDASLINVSGSLRYQSYRFWYEMNHA 68 Query: 64 SPQLNAHRQLFQQALHSPVLTNLNVWYV-PEAVKTRYAHLNANWLEMNNRLSKGDLPWYQ 122 + + ++ +LHSP L LN Y+ P+ VK RY L W EM + D Y Sbjct: 69 PENIELRLEEYRASLHSPELQALNSSYLLPKEVKARYQRLKDVWEEMALYIRHQDHESYL 128 Query: 123 ANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQ 182 + I +YV +ID FV ALQ +AE K+ + +++ + I L ++ + R +++ L+Q Sbjct: 129 SRIEHYVKEIDAFVSALQKFAEFKLKIAISVIAISMLLIIALAYYGIWYTRKRIIKHLDQ 188 Query: 183 LVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHE 242 LV ASQ+I+ FD L N PNELG+L+KTF QM SEL KLY SLE V +KTR L Sbjct: 189 LVLASQQIQQEDFDHVSLAINEPNELGVLSKTFTQMVSELKKLYTSLEDKVADKTRRLTA 248 Query: 243 AKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNV--GENWRISEGQPNP 300 R + VLY CSQ L + + +L+ V NE + + L V + W I+ Sbjct: 249 VNRSMMVLYHCSQILTSKPVSRTLLLQVLERVLANEQLKGIALEVYGADYWNITIDTDLL 308 Query: 301 ELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLME 360 Q + ++ L W++S + E LL SV+ M+GR +Y Q K QQL+LME Sbjct: 309 SEQWQQYEIAIENEKIAMLRWKSSLLCPDERLLQSVAEMIGRSIYVVQNHKQQQQLILME 368 Query: 361 ERATIARELHDSLAQVLSYLRIQLTLLKR--SIPEDNATAQSIMADFSQALNDAYRQLRE 418 ER+ IARELHDSLAQ L++ +IQ+ LL+R I +D ++I+ D +ALNDAY QLRE Sbjct: 369 ERSIIARELHDSLAQSLTFFKIQIRLLQRNGEIEQDWEKQKAILNDLEKALNDAYSQLRE 428 Query: 419 LLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAV 478 LL+TFRLT+++A+L SAL MLDTL+ +TSA+++L C+LP+L AQ QVH+LQI+REAV Sbjct: 429 LLSTFRLTIEEANLTSALERMLDTLRARTSAQISLTCKLPSLMFSAQEQVHVLQIVREAV 488 Query: 479 LNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGT 538 +NA+KHA+ASEI V T DG H + IRDNG GI EPEGHYGL IM+ERA L G Sbjct: 489 INAIKHADASEIEVIAETNADGEHCLMIRDNGKGIETDIEPEGHYGLTIMKERATELHGE 548 Query: 539 LTFSQPSGGGTLVSISFR 556 S GG LV + Sbjct: 549 FKIQNRSEGGALVMVILP 566 >UniRef50_P44604 Sensor protein narQ homolog n=30 Tax=Gammaproteobacteria RepID=NARQ_HAEIN Length = 567 Score = 453 bits (1165), Expect = e-126, Method: Composition-based stats. Identities = 214/565 (37%), Positives = 345/565 (61%), Gaps = 7/565 (1%) Query: 1 MIVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDL 60 M K VS +A+ F I++++ + + ++L ++S+ DAEAINI+GSLRMQSYRL Y++ Sbjct: 1 MYTKGSVSTRIAKYLFIILIVAGVISSLSLAIMSSNKYDAEAINISGSLRMQSYRLLYEM 60 Query: 61 QSGSPQLNAHRQLFQQALHSPVLTNLNV-WYVPEAVKTRYAHLNANWLEMNNRLSKGDLP 119 Q + + + + +LHS L + ++ P +K Y ++ W M + D+ Sbjct: 61 QEQPESVETNLRRYHISLHSSALLEVQNQFFTPNVLKHSYQNILQRWTNMEKYARQQDVK 120 Query: 120 WYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAP 179 Y + +YV +D FV LQ ++E+K +L V++ + I +V + + +VV P Sbjct: 121 NYSKQLTDYVADVDYFVFELQRFSEQKWILGVSVLGFAMLLILLMVSYVIWYTNREVVKP 180 Query: 180 LNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRD 239 L+ + AS +++ QF+ PLDT NELG LA+ F QMS+EL +LY LE +V EKT+ Sbjct: 181 LHLMTKASMQVQMRQFNHIPLDTRKQNELGTLARVFTQMSTELGQLYSRLEEAVNEKTQK 240 Query: 240 LHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNV--GENWRISEGQ 297 L + R L LYQ +Q LNT+ I+ +L + ++ ++++ V E+W I+ G+ Sbjct: 241 LRQTNRTLSTLYQSAQLLNTNTINDKILNQVLNYIFISDHLNFVKVEVMGAEHWDITLGK 300 Query: 298 PNPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLL 357 + +QI +++ G L WQ ++ +++ ML R LYF++ + +QLL Sbjct: 301 QDANNELQIETLSVDNEELGVLSWQAGLPCPDPRIMQNLAQMLARALYFHKNLRQKEQLL 360 Query: 358 LMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQS----IMADFSQALNDAY 413 LMEER+ IARELHDSLAQVLS+L+IQLTLLK ++ +++ ++ I+A+F QAL+ Y Sbjct: 361 LMEERSIIARELHDSLAQVLSFLQIQLTLLKHNLKKEDEQSKEKSLAIIANFEQALSGGY 420 Query: 414 RQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQI 473 QLRELL TFRLT+Q+A+L AL++++D+L++QT+ ++ ++C+LP+ +L+ Q VH+LQI Sbjct: 421 AQLRELLATFRLTIQEANLQLALKQVIDSLRSQTTMQMNVNCQLPSQSLNPQQLVHVLQI 480 Query: 474 IREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAE 533 +REA NA+KH+ + I +S +G + + + D+G+GI +EPEGHYGLNIM ER Sbjct: 481 VREATTNAIKHSQGTVIEISARINAEGEYEILVEDDGVGIPNLEEPEGHYGLNIMAERCR 540 Query: 534 RLGGTLTFSQPSGGGTLVSISFRSA 558 +L L + GGT V I+ Sbjct: 541 QLNAQLHIHRREQGGTQVKITLPHT 565 >UniRef50_A4VHY8 Two-component sensor NarX n=3 Tax=Pseudomonas RepID=A4VHY8_PSEU5 Length = 658 Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats. Identities = 173/597 (28%), Positives = 269/597 (45%), Gaps = 40/597 (6%) Query: 1 MIVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDL 60 + + + + AF I+ S++S +L + DAEAIN AGSLRMQ+YRL + Sbjct: 28 LSTRHSIVFNTLVAFVVIIGFSLVSMLASLYLADALEGDAEAINQAGSLRMQAYRLAFTA 87 Query: 61 QSGS-PQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLP 119 + G L + ++ L S L + + + + + +W E L P Sbjct: 88 EHGPQALLEERIDILERTLRSASLRSALHRHGDTPLPGLHGGVLQHWQERMRPLLDAQPP 147 Query: 120 W---YQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQV 176 Y+ +V+++D+FV LQ +E K+ ++ A+ I + F + + + + Sbjct: 148 RLDDYRREAPEFVSELDVFVRTLQEASEGKLGVIRALQAGTLFIIVLIAFVLIYGLHNNL 207 Query: 177 VAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEK 236 PL L ++ I G F ++ EL LLA+T NQMS EL LY +E V++K Sbjct: 208 ATPLRSLTKMARDIGKGDFSGR-VEIPGDTELSLLARTLNQMSQELAGLYAEMEQKVDDK 266 Query: 237 TRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHI--------------------LQIVRD 276 T L + L++L+ ++ L + D Sbjct: 267 TAALTRSNATLQLLFNSARMLYSQPDDPSLMMGSLLTKVQEVLDTGPISLCLNRSAEAGS 326 Query: 277 NEAAEYLELNVGENWRISEGQPNPELPMQILP---------VTMQETVYGELHWQ----N 323 + A +L + ++ + + P LP + + G L Sbjct: 327 HTAMTSSDLQPPDYCKLPQCEVCPVNQSGRLPSGEELVTFELRSGQDDLGSLRVAHPAGE 386 Query: 324 SHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQ 383 S LL +++ + L Q + +L LMEERA IARELHDSLAQ LS ++Q Sbjct: 387 PLESWQTLLLTTLADLFAASLSLAQLGQKQARLALMEERAVIARELHDSLAQALSAQKLQ 446 Query: 384 LTLLKRSIPEDNATAQ--SIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLD 441 L LKR + +++ AQ + + LN AYRQLRELLTTFR+ + + L AL+ ++ Sbjct: 447 LARLKRLMQKESGQAQLDDSVQQIDRGLNSAYRQLRELLTTFRIKVNEPGLKPALQATIE 506 Query: 442 TLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGN 501 + + D +L L +VH LQIIREA+ N +KHA A + G Sbjct: 507 EFGANSGLHIESDFQLDHCPLTPNEEVHCLQIIREALSNVVKHAEAEHCWLRLTQDGIGT 566 Query: 502 HTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSA 558 V I D+GIGI ++ GHYGL I+RERA L G+++ GGGT V + F A Sbjct: 567 INVEIEDDGIGIRPEEQRTGHYGLIILRERANSLNGSISIGLRPGGGTRVHLRFPPA 623 >UniRef50_A0KIL7 Nitrate/nitrite sensor histidine kinase NarQ n=2 Tax=Aeromonas RepID=A0KIL7_AERHH Length = 570 Score = 428 bits (1100), Expect = e-118, Method: Composition-based stats. Identities = 218/561 (38%), Positives = 317/561 (56%), Gaps = 10/561 (1%) Query: 5 RPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQSGS 64 VS+++ R+ I+ ++ L +A++TL S+ DA+AIN++GSLRMQ+YR+ Y+++ G Sbjct: 8 HSVSSAIGRSMVLILFMASLIAVVAMVTLFYSVPDAKAINLSGSLRMQAYRMAYEIEQGQ 67 Query: 65 PQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPWYQAN 124 L+ F+Q LH+ L W P +++ Y + W M + Y N Sbjct: 68 QVLS-RLDQFEQTLHAAELQETQRWITPASLRRTYGEVLQQWQVMREHIENATPRRYTDN 126 Query: 125 INNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLV 184 +V ID FV +Q++ E K+ ++ G + I T+ +FT+R R QVVAPLNQLV Sbjct: 127 TEQFVAAIDDFVNQMQYHVEFKVRMLALAEGLGLLSIITIAWFTVRFTRQQVVAPLNQLV 186 Query: 185 TASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAK 244 +++I+ +F+ NELG L+ F M+ EL KLYR LE+ VEEKT L +A Sbjct: 187 YCARQIQRQEFNLTLPP-YCENELGELSGAFVTMADELGKLYRELESKVEEKTAKLQQAN 245 Query: 245 RRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISE------GQP 298 L LY +Q L+ + + +L+ ++ +Y+ L E+ + + G P Sbjct: 246 DTLSFLYSTAQKLHAAPLSRRTLLKLLERAAAHQHIDYIRLTRFEHNAMPDYITGRKGWP 305 Query: 299 NPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLL 358 + + M E YG L +SH E L+ + S +L + L+ +Q Q+LLL Sbjct: 306 GDLDAVVSFYLQMDEQEYGRLDVISSH-PIDERLMKNFSMLLAQVLHKDQTLLQHQRLLL 364 Query: 359 MEERATIARELHDSLAQVLSYLRIQLTLLKRSIPE-DNATAQSIMADFSQALNDAYRQLR 417 MEERA IARELHDSLAQ LSYL+IQ TLLKR + D A++ M + L AY QLR Sbjct: 365 MEERAVIARELHDSLAQALSYLKIQSTLLKRFFAKGDTVKAEAAMQQIDEGLGSAYTQLR 424 Query: 418 ELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREA 477 ELL TFRL++ A+L A++ ML+ L+ QT A + L L L+A +H+LQ+IREA Sbjct: 425 ELLGTFRLSIGDANLGEAIKVMLEQLKPQTQADIRLHYGLADTDLEAGQHIHILQLIREA 484 Query: 478 VLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGG 537 VLNA+KHA+A I VSC T DGN V I D+G+GIG HYGL+IM ERA +L G Sbjct: 485 VLNAIKHASAQVIDVSCETLADGNIQVQISDDGVGIGIASSAVNHYGLSIMNERASKLHG 544 Query: 538 TLTFSQPSGGGTLVSISFRSA 558 LT S+ GT V ++F ++ Sbjct: 545 LLTISERPPRGTCVHLTFPTS 565 >UniRef50_B4EWG1 Nitrate/nitrite teo-component system, sensor kinase n=8 Tax=Enterobacteriaceae RepID=B4EWG1_PROMH Length = 609 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 176/588 (29%), Positives = 270/588 (45%), Gaps = 39/588 (6%) Query: 4 KRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQSG 63 + + +A L ++ I+ + S +A AIN +GSLRMQSYRL L Sbjct: 11 RFSIINQIAILMLLFTLFGVVGMAISNHIILSVQGNAHAINKSGSLRMQSYRLLSAL--- 67 Query: 64 SPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLE-MNNRLSKGDLP-WY 121 P + HR Q+ + L +++++Y L W E + LS P Sbjct: 68 -PLDDKHRDYLQELENDLDSKELRQVLSTSSLQSQYVQLTHYWKETLKPTLSAAKQPNDA 126 Query: 122 QANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLN 181 + + +V+Q+D V ++ E+K+ LV L L+F ++ R +++ P Sbjct: 127 KQEVIFFVSQLDTLVSSIDQLTEQKIRLVAYTQLIFTALTLLLLFGSVWHFRRRLLLPWQ 186 Query: 182 QLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLH 241 QL++ + I HG F + +E+ L N MS EL LY LE V EKT DL Sbjct: 187 QLMSMANSIGHGDFSTRFRPRPHHDEIATLGIALNTMSEELSTLYSELEQRVIEKTHDLQ 246 Query: 242 EAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWR--------- 292 + + L LY SQ L++ R IL ++ YL++ + E+ + Sbjct: 247 QKNKVLSYLYHSSQQLHSQAPLCARLRQILAELQHIIPDSYLQIRLYEDNQHTLFNEISL 306 Query: 293 ----ISEGQPNPEL---------------PMQILPVTMQETVYGELHWQNSH----VSSS 329 E P P+ + +T Q YG Q Sbjct: 307 APSSRPEYCPTPDCERCNEDANITTPLNNRLLHWELTDQIHRYGLFVMQLPENSVLTDEQ 366 Query: 330 EPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKR 389 L+ ++ + L Q + QQLLLM+ER+ IARELHDS+AQ LS L++Q++ L+ Sbjct: 367 NNLMLLLTKQISAMLAMEQQNEQQQQLLLMDERSAIARELHDSIAQSLSCLKMQVSYLQM 426 Query: 390 SIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSA 449 Q ++ + + LN AYRQLRELLTTFRL L + L +AL L+ + Sbjct: 427 QSETLPDNCQKLLKEMREELNVAYRQLRELLTTFRLKLTEPGLLAALENTLNEFNQRLGF 486 Query: 450 KLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDN 509 + D +LP +++ +H++QI+REA+ N ++HANA+ V+ T +G + I DN Sbjct: 487 AIHFDYQLPAKCVNSHQSIHVVQIVREALNNILQHANANWAEVAL-TLNNGIVELQINDN 545 Query: 510 GIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRS 557 G GI E HYGL IMRERA L G+ + GGT V ++F Sbjct: 546 GEGITPNPEKINHYGLIIMRERANSLNGSYSIRVRKEGGTQVFVTFPL 593 >UniRef50_B8EB80 Histidine kinase n=20 Tax=Shewanella RepID=B8EB80_SHEB2 Length = 611 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 192/547 (35%), Positives = 300/547 (54%), Gaps = 10/547 (1%) Query: 1 MIVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDL 60 ++ + +++ + ++LLS + A++ L+ SL DA+AIN +GSLRMQSYRL + Sbjct: 5 LMKRGSLTSKILGLMLVLILLSSSLSTFAIINLSYSLGDAKAINASGSLRMQSYRLMFYA 64 Query: 61 QSGSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPW 120 SGS F+ L+S L + W+ P + +Y + WL M + + + Sbjct: 65 NSGSDAAQDKITEFENTLYSDTLKPSDSWFSPRKIADQYQLVIDKWLVMKYYIEQENSRD 124 Query: 121 YQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPL 180 Y A++ ++V+ IDL VL ++H+A K+ L+ A + G + + F +R + +VV PL Sbjct: 125 YVASLKDFVDTIDLLVLEMEHHAAFKLRLLAASQILGLSVMLIIAFVAVRFTKKKVVIPL 184 Query: 181 NQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDL 240 +L+ ++ I G F+ +T EL L + + EL LY LE+ V EKT L Sbjct: 185 QKLMESANTISKGNFEIEMPETEYI-ELTALTHALQKTAKELAMLYGDLESQVAEKTLAL 243 Query: 241 HEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVG------ENWRIS 294 A L LY LN +++D + L ++ E+ +YL L + E Sbjct: 244 TRANNELAFLYDNLLTLNANKLDYKALKAALNQLKGYESLDYLRLIIQYPEQELEVIEAD 303 Query: 295 EGQPNPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQ 354 G P P+ ++ G L + L N+ + ML R + + A + Q Sbjct: 304 GGWPEVTQNSTRFPLQFEQANLGYLELIADQTP-NIALFNNFAIMLTRSIVIHNATEQRQ 362 Query: 355 QLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPE--DNATAQSIMADFSQALNDA 412 QL LMEER IARELHDSL QVLS+L+IQ++LL++++ N T ++ + + ++ ++ A Sbjct: 363 QLALMEERGVIARELHDSLGQVLSFLKIQISLLRKNLDHSCRNPTIEAQLTEINEGVSTA 422 Query: 413 YRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQ 472 Y QLRELL+TFRLT+++ DL SAL ML+ L+ +TS K+TLD +L L+A+ +H+LQ Sbjct: 423 YVQLRELLSTFRLTIKEPDLKSALEAMLEQLRTKTSIKITLDYKLAPQWLEAKQHIHILQ 482 Query: 473 IIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERA 532 I REA LNA+KHA AS I + C +G + + DNGIGIG KE + H+G+ IM ERA Sbjct: 483 ITREATLNAIKHAEASLINIHCYKDDEGMVNINVCDNGIGIGHLKERDQHFGIGIMHERA 542 Query: 533 ERLGGTL 539 +L G + Sbjct: 543 SKLSGKV 549 >UniRef50_C4GHV1 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GHV1_9NEIS Length = 578 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 141/580 (24%), Positives = 252/580 (43%), Gaps = 23/580 (3%) Query: 2 IVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQ 61 ++ + + + L ++ + ++ I +L A A+N G LR Q+YRL L Sbjct: 4 LIPKSLVSRLTLLVTTWLISAFIAISITMLLSLRLEGGAAAVNDTGGLRYQTYRLRLYLN 63 Query: 62 SGSPQLNAHRQLFQQALHSPVL-TNLNVWYVPEA--VKTRYAHLNANWL-EMNNRLSKGD 117 + ++ + Q F Q L +P+ ++ L W ++ + + Sbjct: 64 -DTSKVQSLIQTFDQTLARLHHSDPTRPLNLPQDRSIQQHLKLLQQYWETQIKPQYQSPN 122 Query: 118 LPWYQAN---INNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRH 174 + I N+V ID ++H + + A + IF + T+ ++ Sbjct: 123 PNLALLDNHLIPNFVASIDSLTRTIEHNNAYYVQWLRVFQTALMVLIFVVSGITIVLLKI 182 Query: 175 QVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVE 234 ++ PL L T I++ QF + N E ++ FN+MSS L +LY LE V Sbjct: 183 WIIRPLKNLETGVAAIQNSQFGEHIPEDNS-TEFAIVDNGFNRMSSHLARLYGKLEQQVA 241 Query: 235 EKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRIS 294 EKT+DL L LY +Q LN +Q + L + AE +++V N Sbjct: 242 EKTQDLVRKNHTLNTLYTVAQELNQTQTIRQAAQTFLPHILALTPAEAADVSVHNNLIAR 301 Query: 295 EGQPNPELPMQILP------VTMQETVYGELHWQNSHVSSSEP---LLNSVSSMLGRGLY 345 + + PE P + P + ET G L + P L+ ++ L ++ Sbjct: 302 QSKRQPETPPSLPPFTQSFKIRANETTLGTLVLYYNQRQPENPDGGLVQTLVHQLALAIH 361 Query: 346 FNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIP-EDNATAQSIMAD 404 NQ + +Q +++ER TIA+ LHDS+AQ LSYL +Q +L+ + ++ AQ + Sbjct: 362 NNQLAEESRQYAVLQERNTIAQGLHDSIAQSLSYLSLQTQMLENAWANQETQAAQENLQS 421 Query: 405 FSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDA 464 + + Y +RELL FR + Q ++ A+ + L Q+ ++ + L Sbjct: 422 IKTGIQECYDDVRELLQNFRTKITQKNINEAIETLAQRLAEQSHIRVHTEWHGNGAPLTP 481 Query: 465 QMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGE-PKEPEGHY 523 Q+ + I++E++ N KHA A + + D +T+ I D+GIG + + H Sbjct: 482 SQQLQFIFILQESLSNIRKHAQAQNVTIRIDNQQD--YTLTITDDGIGFNPHTERTDDHI 539 Query: 524 GLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEES 563 GLNIM+ERA+R+ L+ T + ++ E ++ Sbjct: 540 GLNIMQERAQRIRARLSIQSQQNH-TRIQLTLPKKERNQT 578 >UniRef50_A6FC55 Hypothetical nitrate/nitrite sensor protein NarQ n=1 Tax=Moritella sp. PE36 RepID=A6FC55_9GAMM Length = 572 Score = 413 bits (1063), Expect = e-114, Method: Composition-based stats. Identities = 199/563 (35%), Positives = 302/563 (53%), Gaps = 11/563 (1%) Query: 1 MIVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDL 60 + + + + R F I+ L+ + T I+L+ L+ SL DA +IN AG+LRMQSY++ Y+L Sbjct: 6 IPSHQSIIILIGRGMFSILALASMLTFISLVALSLSLSDASSINKAGALRMQSYQIAYNL 65 Query: 61 QSGSPQL--NAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDL 118 +L H F Q+L ++ W + +K + + W + ++ L + Sbjct: 66 SRDESELMRQGHIDTFNQSLAHIKNNIVDNWDISSKLKQEFIIVETQWQKQSDILHSDNP 125 Query: 119 PWYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVA 178 + ++ +V++ID FV LQ+++E K+ ++ I G IF + T+R ++ QV+ Sbjct: 126 EQFLLYVDEFVSEIDTFVQNLQNHSEYKVKVITLIKGLGIGLIFAVCIITIRLMQVQVLK 185 Query: 179 PLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTR 238 PL Q+ AS RI G+FD D NE+G LA + M+++L++LY +LE V+ KT+ Sbjct: 186 PLQQIFAASNRIRKGEFDVSF-DFFYENEIGSLASNISHMANDLNQLYSTLEQQVDAKTK 244 Query: 239 DLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVG----ENWRIS 294 L EAK ++ LY SQ L+ + ++ LQ V + + L + E ++ Sbjct: 245 QLKEAKDKINFLYTTSQKLHVTHLNADMLEQTLQSVSELNGLSFYNLILTGSEVETIYLN 304 Query: 295 EGQPNPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQ 354 G N E + L + ++E +G L + E L S ++ R + +Q+ Q Sbjct: 305 AGADNGEQTID-LKLELEEQSFGTLTVLKREANDQEHL-RSYCRIISRAQHRSQSNLEAQ 362 Query: 355 QLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSI--PEDNATAQSIMADFSQALNDA 412 + LLMEERA IARELHDSLAQ LSYL+IQ+ LLKR + E T I+ + L + Sbjct: 363 RSLLMEERAVIARELHDSLAQALSYLKIQVALLKRHLKNQEVTPTTNEIVEEIDVNLRVS 422 Query: 413 YRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQ 472 Y QLRELL TFRLTL A+L A+ ML L+ +T +K+ L L +H+LQ Sbjct: 423 YTQLRELLNTFRLTLDDANLSEAISIMLAQLRQRTKSKIHLSYELEEHLFKPNQHIHILQ 482 Query: 473 IIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERA 532 IIREAVLN++KHAN++EI + C T +G V I D+G GI HYGL IM ERA Sbjct: 483 IIREAVLNSIKHANSNEIMIDCGTNKNGTIEVSISDDGDGIPADPTKSNHYGLTIMDERA 542 Query: 533 ERLGGTLTFSQPSGGGTLVSISF 555 +LG L GT V ++F Sbjct: 543 SKLGAKLEIKNNIIKGTSVLLTF 565 >UniRef50_B2Q6G3 Putative uncharacterized protein n=3 Tax=Enterobacteriaceae RepID=B2Q6G3_PROST Length = 586 Score = 413 bits (1063), Expect = e-114, Method: Composition-based stats. Identities = 164/581 (28%), Positives = 270/581 (46%), Gaps = 31/581 (5%) Query: 4 KRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQSG 63 + + + I +L I+ I+ + S +A AIN +GSLRMQSYRL + Sbjct: 9 RFSIINQVIGLMLLIAILGIIGMTISNRMIISVQGNAHAINKSGSLRMQSYRLLSLIPLN 68 Query: 64 SPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLE-MNNRLSKGDLPW-Y 121 + + + L S LT + E + +++ L+ WL+ + LS+ + Sbjct: 69 -DHTKEYLDILENDLSSLELTQVVKA---EDLTEKFSELHTFWLKTLRPALSEANSASDA 124 Query: 122 QANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLN 181 + + ++VN +D V + ERK+ V + +F L+ T+ +R ++ P Sbjct: 125 RYEVISFVNMLDELVHDIDEKTERKIAYVAMTQMIFIGLVFLLLMVTIWHLRRKIYYPWM 184 Query: 182 QLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLH 241 +L++ + I F + N +EL L T NQMS EL + Y LE+ V EKT DL Sbjct: 185 KLLSMAHAIGQKDFSQRYPNNNKQDELNTLGLTLNQMSDELAQSYHQLESRVAEKTADLR 244 Query: 242 EAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGEN--------WRI 293 R L LYQ +Q L++++ + +L +++ + + L L + E+ Sbjct: 245 NKNRVLSYLYQSNQILHSTEPLDLRLQKVLGELKNITSLKNLSLKLYEDSNEKYFHEICC 304 Query: 294 SEGQPNPELPM------------QILPVTMQETVYGELHWQ----NSHVSSSEPLLNSVS 337 + P E P + ++ YG + + L+ + Sbjct: 305 TSNDPLSEDPSFIPKDIVHHPKTLLWELSDNMHRYGVISAEIENNEDISEEQNNLVLMLV 364 Query: 338 SMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNAT 397 + L + QQLL+M+ER+ IARELHDS+AQ LS L++Q++ L+ Sbjct: 365 KQISGMLAMEHQIEQQQQLLIMDERSAIARELHDSIAQSLSCLKMQISYLQMQPESLPDK 424 Query: 398 AQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRL 457 Q ++++ +N AY QLRELLTTFRL L + L +L ++ + K+ L+ + Sbjct: 425 HQQLLSEMRGEINTAYSQLRELLTTFRLKLMEPGLLPSLESTINEFSQKMGFKILLNYHI 484 Query: 458 PTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPK 517 P ++ +H++QIIREA+ N +KHA+A+ V+ G T+ I DNG GI Sbjct: 485 PAKSISPHQSIHIIQIIREALSNILKHAHANWAQVTL-QQDSGVVTITIEDNGEGIAPTP 543 Query: 518 EPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSA 558 + HYGL IMRERA L G + GGT V ++F Sbjct: 544 SKQNHYGLIIMRERALSLNGECEIIPRAQGGTKVQVTFSLP 584 >UniRef50_C7RBW7 Histidine kinase n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RBW7_KANKD Length = 584 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 169/576 (29%), Positives = 269/576 (46%), Gaps = 38/576 (6%) Query: 15 FFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQSGSPQLN------ 68 IV L++ S ++ S DA IN+AGSLRMQS RL L + L+ Sbjct: 1 MAIIVALALASLITSMFVSESLDGDAAQINVAGSLRMQSIRLSRALTAEQNNLDILNATT 60 Query: 69 --AHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPWYQAN-- 124 + F++ L + L + + + L W E+ +++ + ++ + Sbjct: 61 ATDEIREFERRLSILLSHGLIANSGNQKIVDIHKVLEQQWFEIKTQVNT-NPARFETDYS 119 Query: 125 -INNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQL 183 I+ +V ID V LQ +E+K+ ++ I + F L RI +V P+N L Sbjct: 120 LIDQFVGTIDRLVSILQSESEKKIRVLRMIQGSALFLTLLTAFIALYRINRSIVQPMNNL 179 Query: 184 VTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEA 243 V A++ G F+ D +E+GLL TFN+MS+ L ++ LE V+EKT L + Sbjct: 180 VAAAKEASKGNFNVRVSDI-SNDEIGLLGTTFNEMSTRLQIIHNHLEEKVQEKTTKLERS 238 Query: 244 KRRLEVLYQCSQAL---NTSQIDVHCFRHILQIVRDNEAAEY--------LELNVGENWR 292 + LE+LYQ S L N+ + + + Q + D + + Sbjct: 239 NKSLELLYQTSHNLVRANSRRDFENLLAQVEQTIGDGQVILCLDQKVQNSHQRIPISQHE 298 Query: 293 ISEGQPNPELP--------MQILPVTMQETVYGELHWQNS---HVSSSEPLLNSVSSMLG 341 + + + Q+ YG L + ++ LL +++ + Sbjct: 299 LPKNCDQIHCSQCKISNNIRHSFHIHKQDKDYGSLQYFSNKGKPEQWVHNLLQAIADNIA 358 Query: 342 RGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNAT--AQ 399 + +Q + LLLMEERA IARELHDSLAQ LS+L++Q +LL R + ++ + Sbjct: 359 VAISLDQKRAQENLLLLMEERAVIARELHDSLAQSLSFLKLQTSLLSRQLDKNLERNTIE 418 Query: 400 SIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPT 459 + + D LN+AYRQLRELLTTFRL +++ L SAL+ + + ++ LD + Sbjct: 419 NTIGDLKDGLNNAYRQLRELLTTFRLQIEEPSLESALKGTVAEFSTKCGYEVELDYSITN 478 Query: 460 LALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEP 519 L + Q+H LQIIREA+ N +H+ AS+ V G V + DNGIGI + Sbjct: 479 QTLTSNQQIHALQIIREALSNVQRHSQASKAWVKLSIQG-GKVHVEVIDNGIGIPDEMPE 537 Query: 520 EGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 HYGL+IM ERA L + + GT+V ++ Sbjct: 538 GTHYGLSIMNERAASLNANIDIRKAPPQGTIVEMTL 573 >UniRef50_A4TJU9 Nitrate/nitrite sensor protein n=29 Tax=Enterobacteriaceae RepID=A4TJU9_YERPP Length = 593 Score = 411 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 177/584 (30%), Positives = 278/584 (47%), Gaps = 39/584 (6%) Query: 6 PVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQSGSP 65 P+ +A + +L + I+ S +A AIN AGSLRMQSYRL + S Sbjct: 7 PLVNQIALLMILLGMLGLAGMVISSWMAQSIQGNAHAINQAGSLRMQSYRLLSMIPLDSN 66 Query: 66 QLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLE-MNNRLSKG-DLPWYQA 123 +L+ L Q +L + E + +Y + W + + +L + A Sbjct: 67 ELSYLVALEQDK----TSHDLQQALLREGLMGQYQQIERYWQDTLKPQLQQAKHPDEVAA 122 Query: 124 NINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQL 183 ++ ++V+Q+D VLA+ H E+++L V I L + +L+ + +R +++ P +L Sbjct: 123 SVADFVHQLDALVLAIDHKTEQRLLQVTLIPLVFSLLTLSLLLAMIYYLRRRLLRPWLKL 182 Query: 184 VTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEA 243 ++ + I G F +E+G+L N+MS EL +Y LE V KT DL + Sbjct: 183 ISMANAIGRGDFSQRYTLDYQRDEMGMLGTALNRMSQELSLIYGDLEQRVVNKTADLQQK 242 Query: 244 KRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGEN------------- 290 + L LY S+ L+T Q +++ ++ E +++ + EN Sbjct: 243 NQVLAFLYHSSRQLHTHQPLSERLAPVIEQLQALTTLENVQICLYENHLYRDHVNHNADA 302 Query: 291 -------WRISEGQPNPELPM--------QILPVTMQETVYGELH----WQNSHVSSSEP 331 S P P+ ++ + YG L N S + Sbjct: 303 EYLMPKNRPASLTISGPVRPISHPELWQSLSWSLSDKLGQYGLLLAKQPLDNPLNSDQQQ 362 Query: 332 LLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSI 391 L++ + L L KH QQLLLMEER+ IARELHDS+AQ LS L+IQ++ L+ Sbjct: 363 LVDMLVEQLTSTLALESQAKHQQQLLLMEERSAIARELHDSIAQSLSCLKIQISCLQMQT 422 Query: 392 PEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKL 451 P+ + ++ LN AYRQLRELLTTFRL L +A L +AL+ +++ + + Sbjct: 423 PDLPENSNLLIKQMRDELNIAYRQLRELLTTFRLKLNEATLEAALQALVNEFSERAGLSI 482 Query: 452 TLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGI 511 T +LP + +H++ I+REA+ N KHA ASE V+ G+ + I DNG Sbjct: 483 TFKYQLPPDQVPNHQAIHMVNIVREALNNIYKHARASEATVNV-HLEQGDVVMSITDNGC 541 Query: 512 GIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 GIG+ E HYGL IM++RA L G + +Q GGGT V + F Sbjct: 542 GIGQASEQPNHYGLMIMQDRANSLHGHCSINQKEGGGTEVRVQF 585 >UniRef50_B7UUR7 Two-component sensor NarX n=7 Tax=Gammaproteobacteria RepID=B7UUR7_PSEA8 Length = 622 Score = 410 bits (1055), Expect = e-113, Method: Composition-based stats. Identities = 172/589 (29%), Positives = 276/589 (46%), Gaps = 42/589 (7%) Query: 2 IVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQ 61 I++R + +V L+++ ALL + +DA IN AGSLRM +YR+ + Sbjct: 26 ILRRSLVVRFGCYLTLLVSLALIGMFSALLFADYTHQDAAVINHAGSLRMLTYRVALE-- 83 Query: 62 SGSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPWY 121 P L + L ++ + L+ E RL LP Sbjct: 84 ---PSLEGRQALLGTLGERLDSGDIRRLLQRQDADDPIRQLHQELREGLARLDPRALPG- 139 Query: 122 QANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLN 181 +A ++ YV ID FV LQ AER+ L+ + +VF TL + + V+ PL Sbjct: 140 RAVLDAYVGDIDRFVGILQAKAERRSQLLSTVQGLCLFLSLLVVFVTLYDLSYHVIGPLR 199 Query: 182 QLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLH 241 +L + ++R+ G+ D+ + + +EL L + FNQM+ EL +Y LE VE+KTR L Sbjct: 200 ELTSTARRLGRGELDAR-VTYSGEDELAQLGERFNQMAGELKSIYGDLEERVEDKTRALS 258 Query: 242 EAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVR-------------------------- 275 ++ +RLE+LY ++ L + D + +L + Sbjct: 259 QSHQRLELLYASARRLGENPYDSRTLQPLLNQLEKVLDAGRVTLCLNKDGVERAYSSLTT 318 Query: 276 -DNEAAEYLELNVGENWRISEGQPNP---ELPMQILPVTMQETVYGELHWQ---NSHVSS 328 + A L+ + G + P P+ + P+++ +GEL + + Sbjct: 319 TERPADFCLQGDCGSCREQASACDQPSSLAQPLLMQPLSIAGHRFGELFIESRSGRLENW 378 Query: 329 SEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLK 388 + L+ + + R + Q+ +L L ER TIARELHDSLAQ LSYL+IQ++ L Sbjct: 379 QQQLIETFCDNIARTFALSLQQEQESRLALFAERGTIARELHDSLAQSLSYLKIQVSRLG 438 Query: 389 RSIPEDN--ATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQ 446 + + + + + + LN AYRQLRELLTTFRL+L + L +AL + + Sbjct: 439 TLLKREAPAEKIEDTLDELREGLNGAYRQLRELLTTFRLSLDEPSLEAALGNAVAEFGER 498 Query: 447 TSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYI 506 + LD RL + L ++H+LQI+REA+ N ++H+ A V + DG ++ + Sbjct: 499 GEVTIELDNRLQHVPLSPNEEIHVLQIVREALSNVVRHSQAQRAWVRLSSQADGQVSIAV 558 Query: 507 RDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 D+G+G + GHYGL IM+ER + LG L F + GT V SF Sbjct: 559 EDDGVGFDPQQNRSGHYGLTIMQERGQTLGSQLRFEARAPHGTRVLFSF 607 >UniRef50_B4TXT2 Nitrate/nitrite sensor protein NarX n=69 Tax=Enterobacteriaceae RepID=B4TXT2_SALSV Length = 598 Score = 410 bits (1054), Expect = e-113, Method: Composition-based stats. Identities = 157/580 (27%), Positives = 263/580 (45%), Gaps = 36/580 (6%) Query: 6 PVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQSGSP 65 + LA + + ++ + A AIN AGSLRMQSYRL + + Sbjct: 10 TLVNQLALIVMLSTAIGVAGMAVSGWLVQGVQGSAHAINKAGSLRMQSYRLLAAVPLDAK 69 Query: 66 QLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWL-EMNNRL-SKGDLPWYQA 123 +Q SP LT + + + L W E++ L + Sbjct: 70 D-QKLLDEMEQTAFSPELTRA---AERDGQQKQLKALQDYWHNELSPGLQHAQNAHAVAE 125 Query: 124 NINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQL 183 ++ +V +D V + H E ++ VV + I + L+ FT+ +R +++ P QL Sbjct: 126 DVTRFVAGLDRLVTSFDHTTELRIERVVLVHRVMAIFMALLLVFTIIWLRVRLLQPWKQL 185 Query: 184 VTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEA 243 ++ ++ + F + + NE+ L N MS EL + Y LE V+EKT L Sbjct: 186 LSMARAVSQRDFTQR-ANISGRNEMAALGSALNNMSEELAESYAVLEQRVQEKTAGLEHK 244 Query: 244 KRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAA-----EYLELNVGENWRISEGQP 298 + L L+Q ++ L++ +L +++ +L +N + Q Sbjct: 245 NQILSFLWQANRRLHSPAPLCERLSPVLNGLQNLTQLHDIELRVYDLEDEDNHQEFTCQS 304 Query: 299 NP--------ELPMQILP-----------VTMQETVYGELHWQNSHVS----SSEPLLNS 335 + P LP +T T YG L + + L+++ Sbjct: 305 DISCDDKGCHLCPRSALPMINGGTTLKWRLTDSHTQYGILLATLPYGRHLSHDQQQLVDT 364 Query: 336 VSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDN 395 + L L ++ Q+ QQL++MEERATIARELHDS+AQ LS +++Q++ L+ Sbjct: 365 LVEQLTATLALDRHQERQQQLIVMEERATIARELHDSIAQSLSCMKMQVSCLQMQGDVLP 424 Query: 396 ATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDC 455 +++ +++ LN ++ QLRELLTTFRL L + L AL + + LD Sbjct: 425 ESSRVLLSQIRNELNCSWAQLRELLTTFRLQLTEPGLRPALEASCQEFSARFGFTVKLDY 484 Query: 456 RLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGE 515 +LP + + +HLLQI REA+ NA+KH++A ++ V+ + ++DNG G+ E Sbjct: 485 QLPPRLVPSHQAIHLLQIAREALSNALKHSHADDVVVTVTQCG-KQVKLKVQDNGCGVPE 543 Query: 516 PKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 E HYG+ IMR+RA+ L G + GGT V+++F Sbjct: 544 NAERSNHYGMIIMRDRAQSLRGDCQVRRRETGGTEVTVTF 583 >UniRef50_Q2SF45 Signal transduction histidine kinase, nitrate/nitrite-specific n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SF45_HAHCH Length = 620 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 179/604 (29%), Positives = 281/604 (46%), Gaps = 51/604 (8%) Query: 2 IVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQ 61 ++ + + +V L++++ + S+ +DAEA+NIAGSLRMQSYR+ L Sbjct: 4 RFQKSLIFRMGALMIAMVSLAMITMLASFFISESAEKDAEAVNIAGSLRMQSYRMQARLL 63 Query: 62 S----GSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLE-----MNNR 112 + S + A + F + + +PVL + + ++ + +W + Sbjct: 64 TLDTPPSDFVAALTRQFAERIENPVLVAEAMKDDSSELHRQFMQVRESWENDVSGFIATY 123 Query: 113 LSKGDLPWYQA---NINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTL 169 D I+ +V++ID V Q AE ++ + I ++ F LV F+L Sbjct: 124 AHNPDRRVADQLGEKIDKFVDEIDNLVQLYQIRAEDRIENLRLIQISALFLTFALVSFSL 183 Query: 170 RRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSL 229 + H V PL L +++I G F L+ +ELGLLA+TFNQMS L ++Y SL Sbjct: 184 LILHHHVELPLRSLTQNARKIARGDFSDR-LEVKNDDELGLLAETFNQMSDALSEMYESL 242 Query: 230 EASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNV-- 287 E V+ KT+ L + L LY ++ ++ + F+ L+ + A +EL + Sbjct: 243 ETRVKNKTQALKRSNDSLNFLYHLAREVSEKTHENIDFQAWLEELTSITAVGGVELCLKT 302 Query: 288 ------------------GENWRISEG----------QPNPELPMQILPVTMQETVYGEL 319 + + E + + P+ + YG + Sbjct: 303 PEAVIPYEHIRNDYMTELPSSCQRQECEKCMVEKAQVCRDNDEVQVRYPLIKEGVQYGVI 362 Query: 320 HWQNS----HVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQ 375 S LL S S + L +++ LM ER IARELHDSLAQ Sbjct: 363 VCTLRNSQYLESWQHQLLQSFSDQVAVALSLKNQGDQERRVSLMNERNVIARELHDSLAQ 422 Query: 376 VLSYLRIQLTLLKRSIPE---DNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADL 432 LSYL+IQ+ L R++ ++ I A+ + + AYRQLRELLTTFRL++ + L Sbjct: 423 SLSYLKIQVARLTRALQSKQVEDEQIDGITAELKEGITSAYRQLRELLTTFRLSISEKGL 482 Query: 433 PSALREMLDTLQNQ-TSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIA 491 +A+ ++ L Q T+ K+ LD R+ + ++HLLQI REA+ NA++H+ + + Sbjct: 483 HAAILHTVEQLTEQSTNVKIVLDYRVEDIPFSPNEEIHLLQITREALQNAVRHSQGNLVT 542 Query: 492 VSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLV 551 VS + P T+ I DNG+GI E E HYGL IMRER L G L + GGT V Sbjct: 543 VSLHSDPKKKVTLAIIDNGVGIPEDPEKLNHYGLAIMRERTRNLHGELAIQRIPEGGTAV 602 Query: 552 SISF 555 SF Sbjct: 603 LFSF 606 >UniRef50_Q3SJ17 Periplasmic Sensor Signal Transduction Histidine Kinase n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SJ17_THIDA Length = 644 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 168/617 (27%), Positives = 275/617 (44%), Gaps = 58/617 (9%) Query: 3 VKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQS 62 ++ + L F I +L++ S + + + EAIN+AGSLRMQS+R+ Q Sbjct: 21 LENSLLMRLGGMFVAITVLAVTSMSTSWMVAETIQGSGEAINLAGSLRMQSWRMAAIYQR 80 Query: 63 --------GSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWL------- 107 + L F+ L + + + + Y + +W Sbjct: 81 LQSDGATEDAEDLGEAIARFEADLKAAPILAVLPSDETTPLWHVYRQVENDWRTVVKPGL 140 Query: 108 EMNNRLSKGDLPWYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFF 167 ++ + +I +V I+ V ++ AE K+L++ I A I +V Sbjct: 141 QVTPAAGRPARGSVLDDIPAFVAHINDLVKQIEDAAEAKILVMRVILGAAVIATMLVVAL 200 Query: 168 TLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYR 227 + + + +V PL L+ + +I G D +E+G L + FN M+ +L LY+ Sbjct: 201 AIYLVNNILVYPLRGLLGLADQIGQGNLAVRN-DLTGEDEIGRLGQAFNHMAEDLSMLYQ 259 Query: 228 SLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVR------------ 275 +LEA VEEKT +L A R LE+LY L I + +L+ + Sbjct: 260 NLEARVEEKTAELTIANRSLELLYHSIARLYNGPIAPRTYEILLKDLENVLGLGHGLACL 319 Query: 276 -DNEAAEYLELNVGENWRISEGQP---------------------NPELPMQILPVTMQE 313 + + A + + EG + LP+ E Sbjct: 320 VEGDGATRGRVIASTLPPLPEGADPCSVMSCAECLARPALAVHPLGDGRRVLSLPLNDTE 379 Query: 314 TVYGELHWQNS----HVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIAREL 369 +YG L + V LL ++S +G + + + ++L L++ERA +AR+L Sbjct: 380 QLYGVLQLEMPPGKELVQWQSQLLEALSRHIGIAIGTARRTEQSRRLSLLDERAALARDL 439 Query: 370 HDSLAQVLSYLRIQLTLLKRSIPEDNA--TAQSIMADFSQALNDAYRQLRELLTTFRLTL 427 HDSLAQ L+Y++IQ++ LK + A A ++A+ + LN AYRQLRELLTTFRL + Sbjct: 440 HDSLAQSLAYMKIQVSRLKPLVEGSGAGSEAGDVLAELREGLNSAYRQLRELLTTFRLRI 499 Query: 428 QQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANA 487 + L +AL+ + N+ +TL L L ++H LQI+REA+ N + HA A Sbjct: 500 EGEGLGAALQTTVTEFSNRGGIPITLVVHLAGCKLTPNEEIHALQIVREALSNVLNHAQA 559 Query: 488 SEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGG 547 + VS DG+ + + D+GIGI HYG+ IM ERA+ LGG L+ + Sbjct: 560 RQAEVSVSCNSDGSVSATVTDDGIGI-HGTARAHHYGMTIMEERAKNLGGRLSVENLAAR 618 Query: 548 GTLVSIS-FRSAEGEES 563 GT V++ S E++ Sbjct: 619 GTRVALHFVPSTRREDN 635 >UniRef50_P0AFA3 Nitrate/nitrite sensor protein narX n=127 Tax=Gammaproteobacteria RepID=NARX_ECO57 Length = 598 Score = 405 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 160/580 (27%), Positives = 265/580 (45%), Gaps = 36/580 (6%) Query: 6 PVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQSGSP 65 + +A + + ++ + A AIN AGSLRMQSYRL + P Sbjct: 10 TLVNQVALIVLLSTAIGLAGMAVSGWLVQGVQGSAHAINKAGSLRMQSYRLLAAV----P 65 Query: 66 QLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWL-EMNNRL-SKGDLPWYQA 123 + L ++ + L + + L W E+ L + A Sbjct: 66 LSEKDKPLIKEMEQTAFSAELTRAAERDGQLAQLQGLQDYWRNELIPALMRAQNRETVSA 125 Query: 124 NINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQL 183 +++ +V +D V E ++ VV + + + L+ FT+ +R +++ P QL Sbjct: 126 DVSQFVAGLDQLVSGFDRTTEMRIETVVLVHRVMAVFMALLLVFTIIWLRARLLQPWRQL 185 Query: 184 VTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEA 243 + + + H F + + NE+ +L N MS+EL + Y LE V+EKT L Sbjct: 186 LAMASAVSHRDFTQR-ANISGRNEMAMLGTALNNMSAELAESYAVLEQRVQEKTAGLEHK 244 Query: 244 KRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNV-----GENWRISEGQP 298 + L L+Q ++ L++ +L +++ +EL V EN + QP Sbjct: 245 NQILSFLWQANRRLHSRAPLCERLSPVLNGLQNLTLLRDIELRVYDTDDEENHQEFTCQP 304 Query: 299 NP--------ELPMQILPVTMQETV-----------YGELHWQNSHVS----SSEPLLNS 335 + P +LPV + T YG L + L+++ Sbjct: 305 DMTCDDKGCQLCPRGVLPVGDRGTTLKWRLADSHTQYGILLATLPQGRHLSHDQQQLVDT 364 Query: 336 VSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDN 395 + L L ++ Q+ QQL++MEERATIARELHDS+AQ LS +++Q++ L+ Sbjct: 365 LVEQLTATLALDRHQERQQQLIVMEERATIARELHDSIAQSLSCMKMQVSCLQMQGDALP 424 Query: 396 ATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDC 455 +++ +++ LN ++ QLRELLTTFRL L + L AL + + + LD Sbjct: 425 ESSRELLSQIRNELNASWAQLRELLTTFRLQLTEPGLRPALEASCEEYSAKFGFPVKLDY 484 Query: 456 RLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGE 515 +LP + + +HLLQI REA+ NA+KH+ ASE+ V+ D + ++DNG G+ E Sbjct: 485 QLPPRLVPSHQAIHLLQIAREALSNALKHSQASEVVVTVAQN-DNQVKLTVQDNGCGVPE 543 Query: 516 PKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 HYG+ IMR+RA+ L G + GGT V ++F Sbjct: 544 NAIRSNHYGMIIMRDRAQSLRGDCRVRRRESGGTEVVVTF 583 >UniRef50_A8FUN8 Two-component sensor NarX n=3 Tax=Shewanella RepID=A8FUN8_SHESH Length = 591 Score = 405 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 166/568 (29%), Positives = 273/568 (48%), Gaps = 23/568 (4%) Query: 5 RPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLG----YDL 60 + AS + I+ L + S ++L S DAE IN AGS+RMQ+ R+ D Sbjct: 28 SSLVASAGQFMAIIITLGLFSMISSILVAESLSGDAERINRAGSMRMQAIRVSRANLIDQ 87 Query: 61 QSGSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPW 120 P L+ Q+F+ L + V ++ + ++W + + Sbjct: 88 DGSRPILSQEIQVFENKLSHLFFGGIASTIDDPEVIAQHQKILSSWDAIKQSPQTTSVED 147 Query: 121 YQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPL 180 + + + +ID V LQ +E+K+ L+ I I + L ++ ++ PL Sbjct: 148 F----DRFTIKIDKLVNLLQMESEKKLSLLRLIQGITLFSILIVSALVLFKLNRSLIIPL 203 Query: 181 NQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDL 240 QLV + G F+ +D NELGLL++T MS +L Y+ E V++KT++L Sbjct: 204 KQLVRVASEAGKGNFN-IKVDHIADNELGLLSRTIAHMSKQLENTYQEFEDRVDKKTQEL 262 Query: 241 HEAKRRLEVLYQCSQALNT---SQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQ 297 ++ + LEVLY+ + L+ QID + ++Q++ + + L N + + Sbjct: 263 TQSNQSLEVLYRAASNLSNYEYHQIDQKIIQELVQVLGYGKVSIVLCEKSINNLTFYKAK 322 Query: 298 ----PNPELPMQILPVTMQETVYGELHWQNS----HVSSSEPLLNSVSSMLGRGLYFNQA 349 + + + + + +G++ WQ + LL +++ ++ + Q Sbjct: 323 TNTIDHQYMDVHQFVLEKRGRFFGDIVWQVPKHETPEDWQKQLLQAMADIVATAIELEQK 382 Query: 350 QKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPED--NATAQSIMADFSQ 407 + +LL+ EERA IARELHDSLAQ LS+L++Q++LL R + + + D Q Sbjct: 383 KNTENRLLIAEERAVIARELHDSLAQSLSFLKVQMSLLTRKMQKGLPEEQVNETINDIKQ 442 Query: 408 ALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQ 467 LN AY QLRELLTTFRL L L +AL+ + + + L+ +P L A + Sbjct: 443 GLNHAYLQLRELLTTFRLKLDDPSLENALQGTVAEFAEKCQHAIELNFEIPQNYLTANQE 502 Query: 468 VHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNI 527 +H+LQIIRE++ N +HA AS V+ + D + I DNG G+ E +GH+GL I Sbjct: 503 IHVLQIIRESLSNVHRHAEASLAGVNLIKEDD-KIKLAIWDNGRGLPSNLEQQGHFGLGI 561 Query: 528 MRERAERLGGTLTFSQPSGGGTLVSISF 555 M+ERA+ L L F S GT V + F Sbjct: 562 MKERAKSLNSVLAFEPNSPSGTKVLLEF 589 >UniRef50_Q0A9X9 Signal transduction histidine kinase, nitrate/nitrite-specific, NarQ n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A9X9_ALHEH Length = 644 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 177/610 (29%), Positives = 287/610 (47%), Gaps = 49/610 (8%) Query: 2 IVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDL- 60 ++ ++ SL + + L ++ DA AIN+AGSLRMQSYR+ L Sbjct: 10 LLHPTLAGSLFALLVGVATIGFLGMLHGAFVAKTAQHDAAAINVAGSLRMQSYRIATTLL 69 Query: 61 -----QSGSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWL-EMNNRL- 113 Q+G+ L+A F++ LHSP L + V+ + ++ W E+ L Sbjct: 70 DDQGPQAGAKTLDAEVAAFERRLHSPELLRPIPANPDDPVREAWEEVHRQWTTELKPLLV 129 Query: 114 ---SKGDLPWYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLR 170 S G Y ++ +V +D V A Q AE ++ ++ + + LV + L Sbjct: 130 DGSSAGSPVRYLDQVDRFVGTVDNLVTAAQSAAEARIHNSQSVRVLAMALLSGLVLYGLY 189 Query: 171 RIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLE 230 R+ ++V P+ QL + R+ G F++ +ELG+ A+TFN+M+ L + RSL Sbjct: 190 RLHMRLVLPVQQLNYVAGRLMKGDFEARARYLP-NDELGMYARTFNRMADTLTDMQRSLA 248 Query: 231 ASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVG-- 288 V EKT +L LE++Y S+ L+ ++ + +L + L + + Sbjct: 249 HRVSEKTAELRRRNSALELVYNASRDLSAGALESSNLKAMLDTLERVTGLGPLSICLAQP 308 Query: 289 -------------ENWRISEGQPNPELPMQI---------------LPVTMQETVYGELH 320 E+ P+ + M + LP+ + YG L Sbjct: 309 GADKSFETLSTSAESRPARCSAPDCKGCMNVVPRHGGGVVCPGMLALPLEDRNVRYGLLQ 368 Query: 321 WQ----NSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQV 376 + + L +V+S + + +++LMEERA IARELHDSLAQ Sbjct: 369 VEYTPGDQPRGWQLHLAETVASHIAAACARERELDAEHRIVLMEERAVIARELHDSLAQA 428 Query: 377 LSYLRIQLTLLKRSIPED--NATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPS 434 LSY++IQ+ L+ + ++ A ++I+++ LN AY QLRELLTTFRL + L S Sbjct: 429 LSYMKIQVARLQGLMRKEHEPAQLEAILSELRDGLNSAYEQLRELLTTFRLGMDSPGLES 488 Query: 435 ALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSC 494 ALR+ + + + LD RL L+A ++HLLQI REA+ N ++H+ A+ V Sbjct: 489 ALRKAVKEFSERGDIPIRLDYRLSHWPLNANEEIHLLQIAREALANVVRHSQATRADVVV 548 Query: 495 VTAPDGNHTVYIRDNGIGI-GEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSI 553 + + + + DNG+G+ +EP HYG IM+ERAE LGG L +GGG V + Sbjct: 549 APGSNHDVVLEVLDNGVGLAAVSEEPGHHYGTAIMQERAEGLGGMLRLGNRAGGGMRVML 608 Query: 554 SFRSAEGEES 563 +FR + Sbjct: 609 TFRPESMARA 618 >UniRef50_A1U593 Integral membrane sensor signal transduction histidine kinase n=2 Tax=Marinobacter RepID=A1U593_MARAV Length = 618 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 170/605 (28%), Positives = 270/605 (44%), Gaps = 52/605 (8%) Query: 1 MIVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDL 60 M + P+ LA IVL +I+S L S +A AIN+AGSLRM +++L Sbjct: 1 MTSRSPLVNRLAVVIGAIVLTAIVSMATTLAVSNSIEGNATAINLAGSLRMGAFQLAARS 60 Query: 61 QSGSPQ-----LNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSK 115 + PQ LN + ++ L P + + +Y + +W + + Sbjct: 61 ATDDPQDSTGTLNQRIEAYEDRLRDPAIIRSIPRTDDHPLAEQYKTVEYSWANQLRQSLE 120 Query: 116 GDLPWY------QANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTL 169 P A + Y ++DL V L+ E ++ L+ I + + +V Sbjct: 121 SHQPGAPLSAEMIAAVEEYTGEVDLLVSMLERRTEARIDLLHLIQIISMVFSVLIVLALF 180 Query: 170 RRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSL 229 ++++++ PL +LV + + F + +EL L + F+QM+SEL Y L Sbjct: 181 LDLKNRILRPLRKLVGIATAVGEQDFSHK-ANLKGSDELAQLGQAFDQMTSELALTYYEL 239 Query: 230 EASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGE 289 E+ +KT +L + L+V++ S+ L + +LQ + + L + + Sbjct: 240 ESRARQKTEELEISHAALQVMHSASRGLFANHDLCSGAIPMLQDLEQLLGIGPIRLFLHD 299 Query: 290 ----------------------NWRISEGQPNPEL-----------PMQILPVTMQETVY 316 + + PE+ +LP+ + Sbjct: 300 KESAEPVEAITTATPKRPFYCRDHHCNACLVTPEVYDEMPLENNDGRRLLLPIRTPGQLL 359 Query: 317 GELHW----QNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDS 372 G L + +S LL +++ L ++ + QQL L EER IARELHDS Sbjct: 360 GTLEVWYPAEKGLPETSRRLLETLTDQLATAIFLEKQITEEQQLTLAEERTVIARELHDS 419 Query: 373 LAQVLSYLRIQLTLLKRSI--PEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQA 430 LAQ LSYL++Q+T L+R E I+ + S LN AYRQLRELL TFRL L Sbjct: 420 LAQSLSYLKMQVTRLRRLNIDGEQKPIHDDILDELSTGLNSAYRQLRELLATFRLKLDTP 479 Query: 431 DLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEI 490 DL +ALR+ +D + + + LP L ++H LQIIRE + NA+KHA+A++I Sbjct: 480 DLATALRKTIDEFSERLGKPVAFEYNLPPQTLSPNEEIHTLQIIREGLANAVKHADATDI 539 Query: 491 AVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTL 550 AV V I+DNG G+ +P HYGL IM++RA LGG + GG Sbjct: 540 AVKVVF-DSPQVRASIQDNGKGLPGGDQPVNHYGLIIMQDRARTLGGKVNVRNRDEGGVE 598 Query: 551 VSISF 555 V+++F Sbjct: 599 VALTF 603 >UniRef50_A4BGQ5 Signal transduction histidine kinase, nitrate/nitrite-specific n=1 Tax=Reinekea blandensis MED297 RepID=A4BGQ5_9GAMM Length = 562 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 167/570 (29%), Positives = 274/570 (48%), Gaps = 17/570 (2%) Query: 2 IVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQ 61 + PV++ L + L+ +S L DA+A+N++GSLRMQSYR+ Y L+ Sbjct: 4 FARYPVASLLIIGLITLAALAAVSGLYTLWMTTVLSGDAKAVNLSGSLRMQSYRIAYLLE 63 Query: 62 SGSPQ--LNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLP 119 +PQ + + F++ L S L P + ++ + + +M+ + Sbjct: 64 QDAPQEHIASLLDTFEERLTSAALKGQIPSDHPH-LTAAFSTVEQRFEQMHTAAIE-TPE 121 Query: 120 WYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAP 179 Y ++ +V ID V L+ ++E K+ + + + I +VV P Sbjct: 122 IYLQEVDAFVEDIDTMVAQLESWSENKVQNLREQQILITLLSLLAAILFAIIINRRVVLP 181 Query: 180 LNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRD 239 L +L+ RI G + +D +E G LA T N+M+ E+ +++ SLE++++E+T + Sbjct: 182 LQRLIRTVHRIGRGDRSAR-VDFQGRDEFGRLASTLNRMADEISQVHGSLESTIQEQTAE 240 Query: 240 LHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPN 299 L R LE L+ SQ L+T + D+ +H ++ E L L E+ Q Sbjct: 241 LSRNNRILEFLFTLSQRLSTEKPDITALKH--------QSVEELRLICPEHSINWHQQMY 292 Query: 300 PELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLM 359 P + + Y +N + + LL +VS + + A H ++ L+ Sbjct: 293 ETSPQGYVVRCDADQSYLICEQRNGLTAWQKQLLQTVSDLFDNAISRMGAYDHENRIALL 352 Query: 360 EERATIARELHDSLAQVLSYLRIQLTLLKRSIPE--DNATAQSIMADFSQALNDAYRQLR 417 ER++IARELHDSLAQ LSYL+IQ+ L + D T SI+ + LN +YR+LR Sbjct: 353 NERSSIARELHDSLAQQLSYLKIQVVRLVKLRERQADEETLNSIIDELRDGLNSSYRKLR 412 Query: 418 ELLTTFRLTLQQADLPSALREMLDTLQNQT-SAKLTLDCRLP-TLALDAQMQVHLLQIIR 475 ELL TFR L + L +++ +D + + + ++ L L ++H + +IR Sbjct: 413 ELLVTFRSQLDEPGLLPSVKAAIDDVNRMSPNCQIHLYIEDNWPETLTPSQEIHCMHVIR 472 Query: 476 EAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERL 535 EA+ N +KHA A VS P V I D+GIG GE HYGL+IM ERA R+ Sbjct: 473 EAITNVVKHAKAENAVVSMKRLPSNTLQVTINDDGIGFGETLTKPMHYGLDIMAERAIRI 532 Query: 536 GGTLTFSQPSGGGTLVSISFRSAEGEESQL 565 GG + + + GG V+++F EE +L Sbjct: 533 GGNIDYKNLNHGGAGVTLTFPLNASEEDRL 562 >UniRef50_Q0HUB7 Signal transduction histidine kinase, nitrate/nitrite-specific, NarQ n=2 Tax=Shewanella RepID=Q0HUB7_SHESR Length = 589 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 149/574 (25%), Positives = 237/574 (41%), Gaps = 44/574 (7%) Query: 26 TGIALLTLASSLRDAEAINIAGSLRMQSYRLGY---------DLQSGSPQLNAHRQLFQQ 76 I+ S A AI+ GS+RM+SYRL L + SP ++ Q Sbjct: 1 MVISSWVSNSLQGSAHAIDEIGSMRMKSYRLLSFLPLENEQKLLLANSPFISKLNIGKNQ 60 Query: 77 ALHSPVLTNLNVWYVPEAVKTRYAHLNANW-LEMNNRLSKGDLPW-YQANINNYVNQIDL 134 + L V+ E + + L W L++ L + ++ +V ++D Sbjct: 61 LNKGEDVVKLKVFLEREDLINDFNDLYQYWNLQLQPTLLSAKTASDARVKVDFFVAKLDN 120 Query: 135 FVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQ 194 V + E K+ LV + L + ++ ++ P +L+ + I G Sbjct: 121 LVKKIDSNTEVKLKLVSRVHSVFIFLSVLLTIVGVVFLKLRIFRPWQELLRIANSISSGD 180 Query: 195 FDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCS 254 F + +E+ +L + MS++L K+Y LE V++KT + E L LY+ S Sbjct: 181 FSQRFRERKYHDEMTILGDAMSCMSTQLRKMYDELERRVQQKTLHIREQNLWLSFLYRSS 240 Query: 255 QALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGE------------------------- 289 L++S + IL+ + + ++L + E Sbjct: 241 NQLHSSASTCLRYFPILKELEELIPFTSMQLRLYEYNNSNNFEQFKTSNTVRPKYCADHE 300 Query: 290 ---NWRISEGQPNPELPMQILPVTMQETVYGELHW----QNSHVSSSEPLLNSVSSMLGR 342 S Q M P+ Q YG + L+ ++ L Sbjct: 301 CELCLDKSFSQSTLNCKMLEWPLRDQYGEYGVMIAYCLNDQDLTPLQSQLVKTLVEQLST 360 Query: 343 GLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIM 402 L +QL++M+ERA IARELHDS+AQ LS L+I+++ L+ A ++ Sbjct: 361 SLALEYQDYKNKQLMIMDERAVIARELHDSIAQSLSCLKIKVSCLQMQSKNLGAEQLVLI 420 Query: 403 ADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLAL 462 + LN AY LRELLTTFRL L + L AL ++ + + L +LP + Sbjct: 421 QEMRTELNSAYSHLRELLTTFRLKLNEPGLHPALESTIEEFNKKLGFSIELIYQLPPNCV 480 Query: 463 DAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAP-DGNHTVYIRDNGIGIGEPKEPEG 521 + +HL+ I+REA+ N KHANA V P + V IRDNGIG+ Sbjct: 481 SSHQAIHLVHIVREALSNIYKHANADCAVVQLDFDPIHNHIQVVIRDNGIGLSGDMTKVN 540 Query: 522 HYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 HYG++IM +RA+ L G + GG V I F Sbjct: 541 HYGISIMNDRAKNLPGKCSIDNHLNGGVEVKILF 574 >UniRef50_Q5NYZ8 Nitrate/nitrite sensor kinase n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5NYZ8_AZOSE Length = 651 Score = 401 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 145/641 (22%), Positives = 247/641 (38%), Gaps = 88/641 (13%) Query: 1 MIVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDL 60 + ++ ++ + L+++ + G+ L A AIN AGSLRM++YR+ + L Sbjct: 2 LRLRNSLATKITGILLVFFLVALTAIGLTLFISWQLEGAAAAINDAGSLRMRAYRIDHLL 61 Query: 61 QSGSPQLNAHRQLFQQALHS------------PVLTNLNVWYVPEA--VKTRYAHLNANW 106 G + F +L S ++P + + W Sbjct: 62 ARGPAATSNDPMAFTASLKSEFDDFERVFGELRRGDPRRPLFIPRDNGIPADLDEMAEFW 121 Query: 107 -LEMNNRL-----------SKGDLPWYQANINNYVNQIDLFVLALQHYAERKMLLVVAIS 154 L + L + L + + ++V+ I+ VL ++ R ++ A Sbjct: 122 SLRIRPVLADLIATSDPERRRPGLAEFDRTVKSFVSGINEVVLKMERSYARNTDILRASQ 181 Query: 155 LAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKT 214 ++ +R V+ P+ +L +R+E F++ +E G L++ Sbjct: 182 VSLIALAIIGTLVLIRFFFVLVIQPVCELQDGMKRMEQEDFNARVPVLAS-DEFGELSEG 240 Query: 215 FNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIV 274 FN+M+ L LY +LE V KTR L R LE+LY L R LQ V Sbjct: 241 FNRMAVHLQGLYATLEERVAAKTRSLEGKNRELEILYDIGAFLREPSDVDSLCRGFLQRV 300 Query: 275 RDNEAAEYLELNV----------------------------------------------- 287 + A + Sbjct: 301 QATFGAGASSARLLDSGSENLCLTVHNGLDREFIDREAVLQCGECLCGEAVRRGTSLVSE 360 Query: 288 ----GENWRISEGQPNPELPMQILPVTMQETVYGE----LHWQNSHVSSSEPLLNSVSSM 339 +S + + +T + G S LL ++ Sbjct: 361 LSAPDPALTLSVCRRAGFQVITATAITANKQTLGIYNLYFVGARPLSDSDRLLLETLGQQ 420 Query: 340 LGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNA-TA 398 LG + + Q ++ + EER +ARELHDS+AQ L+++ +Q+ +L+ ++ + A A Sbjct: 421 LGIAIENQRLQASGREHAVSEERNLLARELHDSIAQGLAFMNLQVQMLESALDRNEAGEA 480 Query: 399 QSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLP 458 + +A Q + ++Y +RELL FR +++ DL A+ L L QT LD Sbjct: 481 RDTLAMLRQGVQESYDDVRELLVHFRTRVEKQDLALAITATLRRLAEQTGIATDLDVLGD 540 Query: 459 TLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEP-- 516 LDA+ + +L +++EA+ N KHANA + V DG +V +RD+G+G E Sbjct: 541 AAPLDAEAETQVLYVVQEALSNVRKHANARSVKVVIRRGIDG-LSVVVRDDGVGFDEADR 599 Query: 517 --KEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 E H GL IMRER R+GG + G GT + + Sbjct: 600 STAAQEAHIGLEIMRERTLRIGGRFSIRSARGKGTEIRVEL 640 >UniRef50_Q5QWJ9 Nitrate/nitrite sensor histidine kinase n=1 Tax=Idiomarina loihiensis RepID=Q5QWJ9_IDILO Length = 598 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 172/592 (29%), Positives = 285/592 (48%), Gaps = 38/592 (6%) Query: 1 MIVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDL 60 MI + + IV+++ S+ A L S +DAE IN+AGS RM++Y+ L Sbjct: 1 MIRNASIINVFRVSLALIVIVASASSLSAFWLLEKSEQDAELINVAGSHRMKAYKFALQL 60 Query: 61 QSGSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPW 120 SG + L L + + +++ W +++ +++ D Sbjct: 61 SSGKKVQASETAQEIDTLWEQPLLHRHFVKAGGSIQQLAKDARTEWQRVHSEIAEQDFAR 120 Query: 121 YQAN----INNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQV 176 + I+NYVNQ+D V LQ ++ER+M V + I + FF L ++ ++ Sbjct: 121 FSQQQSNAIDNYVNQLDTLVGQLQEHSERRMETVRSSLALASFFIVAIFFFLLTVLKRKI 180 Query: 177 VAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEK 236 PL L+ S+R+ G F + + +E+G L++T N+MS + Y LE VE++ Sbjct: 181 NQPLRHLLAVSKRLGQGDFTAKS-KIDNEDEIGQLSRTMNKMSETVSYFYGGLERRVEQQ 239 Query: 237 TRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQ--------------IVRDNEAAEY 282 T++L + L LY ++++ D + ++ +++ ++ + + Sbjct: 240 TQELSRKNKVLSFLYDTARSIIVHSYDYNNYQQVIEKLYEIGEVNDIELCLLTEEGNRPF 299 Query: 283 LELNVGENWRISEGQPNPELPMQILP--------------VTMQETVYGELHWQ----NS 324 L+L + + ++ P + ++ YG L + Sbjct: 300 LQLQPRPSSHEPCEAGDCATCLKAGPGASVIEDKLVYRFVLKREDQNYGVLIVRCEQGQP 359 Query: 325 HVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQL 384 + + L++S + L ++ ++L LM ER IARELHDSLAQ LSYL+IQ+ Sbjct: 360 LATWQQQLMSSTADQLALSQSLKSEEEQVRRLALMHERTVIARELHDSLAQALSYLKIQV 419 Query: 385 TLLKRSIPE-DNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTL 443 T L + I + D AT + + + LN AYRQLRELLTTFRL + + L SAL+ + L Sbjct: 420 TRLHKGIEKNDRATIDDVSNELREGLNSAYRQLRELLTTFRLKVDGSGLYSALQTTVKQL 479 Query: 444 QNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHT 503 Q++ + LD RL + L ++HLLQIIREA NA+ H+ SE+ +S + Sbjct: 480 TEQSNMVVHLDYRLNNIPLVPHEEIHLLQIIREASQNAVNHSQGSEVHISLSQPSGQDVE 539 Query: 504 VYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 + I D+GIG+ E E HYGL IM+ER+ LGG + S+ GGT V +F Sbjct: 540 LKITDDGIGLPENAEKVNHYGLAIMQERSRNLGGEIKISRLESGGTEVCFTF 591 >UniRef50_Q9F0Y0 Nitrate/nitrite sensor protein n=1 Tax=Pseudomonas fluorescens RepID=Q9F0Y0_PSEFL Length = 599 Score = 398 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 169/583 (28%), Positives = 282/583 (48%), Gaps = 32/583 (5%) Query: 3 VKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQS 62 ++ + A A I +L++ S+ A L S DA AIN AGS+RM++Y L + L + Sbjct: 5 LRSSLPARAGLAVILIAILALASSLSAGLIAWFSQGDAAAINTAGSVRMETYHLSWKLAA 64 Query: 63 GSPQ-LNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLE-MNNRLSKGDLPW 120 G+ + A QQ L SP L + ++ Y L W + + + +GD + Sbjct: 65 GANDDIPAIIASLQQRLDSPALRAVLEDGPETSLHKSYRDLMQRWNQTLRPAIERGDSAF 124 Query: 121 YQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPL 180 +Q++ +++V Q+D FV LQ +E K AI ++ L +++ VV PL Sbjct: 125 FQSSASSFVEQLDQFVTLLQRQSEHKQGWQQAIQGIALFSTMIILLIGLYELQYGVVTPL 184 Query: 181 NQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDL 240 +LV A+QR G+F ++ +ELG LA +FN M+ + + +R+LEA V++KT +L Sbjct: 185 QELVDATQRFRRGEFQVR-VNHQSEDELGQLATSFNTMAETIEQSHRTLEAQVQQKTLNL 243 Query: 241 HEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISE----- 295 +A LE+LYQ S++L T Q + +++ + L L + + Sbjct: 244 QQANAALELLYQSSRSLATRQANAEGLDELIRRFQQRLPGLRLTLCLQGQLQAPAKHLLA 303 Query: 296 -----------------GQPNPELPMQILPVTMQETVYGELHWQN----SHVSSSEPLLN 334 + Q ++ Q T GEL + L+ Sbjct: 304 LHGAASRQVCASSDCASCHKHNAARPQAFSISNQGTELGELKAHFVDGHAAQPWETALIQ 363 Query: 335 SVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPED 394 ++++++G L + ++ +LLL++ER IARELHDSLAQ LSY+++Q++ ++ + Sbjct: 364 ALANLIGTSLSLKRQREQDHRLLLLDERTIIARELHDSLAQALSYMKLQVSRMQTLMRRG 423 Query: 395 NA--TAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLT 452 T +++ + + LN+AYRQLRELLTTFRL ++ L L++ + N+ ++ Sbjct: 424 EPVQTLETVTGELREGLNNAYRQLRELLTTFRLQIRDDGLVQELKDTAEEFSNRGDFQVH 483 Query: 453 LDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIG 512 L L A Q+H+LQI REA+ N ++HA+A + + + I D+G G Sbjct: 484 LFIDTLAFELSASEQIHILQITREALSNCLRHAHAENAWLELRQEGE-TVRLSIEDDGRG 542 Query: 513 IGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 + H+GLNIM ERA L G L GT + F Sbjct: 543 FSGEVDQCEHHGLNIMNERARSLHGQLQIHSRPPHGTRIQAHF 585 >UniRef50_Q47HU2 GAF:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase, dimerization and phosphoacceptor region n=1 Tax=Dechloromonas aromatica RCB RepID=Q47HU2_DECAR Length = 646 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 140/636 (22%), Positives = 239/636 (37%), Gaps = 86/636 (13%) Query: 7 VSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQSG--- 63 +S + L++ + G+ LL A AIN AGS RM++YRLG+ + G Sbjct: 8 LSRKIIGVLVVFFLVATSAIGLTLLISWQLEGVAAAINDAGSQRMRTYRLGHLMARGLEA 67 Query: 64 -------SPQLNAHRQLFQQALHSPVL-TNLNVWYVPE--AVKTRYAHLNANWLEMNNRL 113 + L+ F + L L P V+ R + +W + L Sbjct: 68 ETQVAALTAALSEEVVRFDKVQRDLQLGDPLRPLSSPRNFEVQDRLHDVEQSWRRIIRPL 127 Query: 114 SKGDLP-----------WYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIF 162 + L + + V I+ VLA++ L+ + +A + Sbjct: 128 VESYLAGDHQARSEVLDRFDLELEPSVMGINELVLAMERSYAYDTNLLRYVQVALVLLAI 187 Query: 163 TLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSEL 222 +R V+ P++ L +R+ + +ELG LA FNQM+ L Sbjct: 188 FGTVILIRFFEQLVIRPVSLLHVGMRRMTGNDLTVR-VPVTSDDELGGLAAGFNQMAEHL 246 Query: 223 HKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEY 282 Y SLE +E +TR L + L +LY + L+ L +++ A+ Sbjct: 247 EDAYGSLEQRIEAETRRLAQRNHELGILYAATSFLSEPAPLEALCEGFLDHIKNALGADA 306 Query: 283 LELNV---------------------------------------------------GENW 291 + + E Sbjct: 307 GAVRLYVPQTDKLYLMTHEGLSDEFVANEGQLNCGECLCGEVFQSSRPAAFATANPPEGM 366 Query: 292 RISEGQPNPELPMQILPVTMQETVYGE----LHWQNSHVSSSEPLLNSVSSMLGRGLYFN 347 R+ + + G + LL ++ LG + Sbjct: 367 RLRSCIREGFATATAFSILYDKQRLGVYNLYFRRSQALSEQEIHLLETLGHHLGVAIENQ 426 Query: 348 QAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPED-NATAQSIMADFS 406 + + ++L + EER +A+ELHDS+AQ L++L IQ+ LL+ S+ + A Sbjct: 427 RLKSREKELAVSEERNLLAQELHDSIAQGLAFLNIQVQLLQDSLRKGKADEAMQTAGQLR 486 Query: 407 QALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQM 466 + + ++Y +RELL FR + Q+DL SA+ L+ + QT + + T L Sbjct: 487 EGVQESYDDVRELLVHFRTRVHQSDLDSAINAALEKFEGQTGIQTEFERIGATTPLPPTD 546 Query: 467 QVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEP----EGH 522 ++ ++ I++E++ N KHA A + V+ G V + D+GIG +P + H Sbjct: 547 EIQIMHIVQESLSNIRKHAKAKRVRVTV-RQELGTSKVMVEDDGIGFDPQNDPNCLSDRH 605 Query: 523 YGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSA 558 GL IMRERA R+GG + G G+ V +S Sbjct: 606 VGLKIMRERAHRIGGECRITSNPGQGSCVILSLPKE 641 >UniRef50_B4RLW4 NarX/NarQ n=17 Tax=Neisseria RepID=B4RLW4_NEIG2 Length = 589 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 138/572 (24%), Positives = 242/572 (42%), Gaps = 25/572 (4%) Query: 6 PVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQSGSP 65 P+S L V L+ LS + LL A I AG+L+MQ+YRL Y GSP Sbjct: 12 PLSLRLKLLTGLWVGLAALSVVLTLLLSFRLENAASVIEEAGNLKMQAYRLAYMAGEGSP 71 Query: 66 --QLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRY----AHLNANWLEMNNRLSKGDLP 119 Q++ F+++L ++ +P Y + L +W + Sbjct: 72 RAQIDNQIAEFEKSLKRISQSDAIHPLIPSDNPLAYDLIQSMLIIDWQANILPPLQAYRR 131 Query: 120 WYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAP 179 Q + + I+LF+ AL++ E+ + + L + V+ P Sbjct: 132 PTQIELYRFAGNIELFLQALENAGEKNTWWLRRFQWVIMLMTLVSSVLMLFWHQIWVIRP 191 Query: 180 LNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRD 239 L L ++RI FD P + P E + + FNQM+ L LY LE V E+T + Sbjct: 192 LQALREGAERIGQRHFDIPVPEDGTP-EFKQVGRCFNQMALRLKTLYDDLEGQVAEQTHN 250 Query: 240 LHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNV----GENWRISE 295 L + R L +LY+ ++ L+ S L + A+ + + + + Sbjct: 251 LEKQNRNLTLLYRTTRDLHQSYTPRQAAEEFLNHILPAVGAQSGNICLENGSDTDISVHT 310 Query: 296 GQPNPELPMQ-----ILPVTMQETVYGELHWQ----NSHVSSSEPLLNSVSSMLGRGLYF 346 + + P++ P+ Q G L S LL ++ LG L Sbjct: 311 AEHGKKPPLEKYHDETFPIEYQNEKLGMLSLGFSDGTSLTGDDRTLLQTLIRQLGVSLAG 370 Query: 347 NQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPED-NATAQSIMADF 405 + ++ + L +++ER+ IA+ LHDS+AQ L++L +Q+ +L+ + E+ A + Sbjct: 371 AKQEEEKRLLAVLQERSLIAQGLHDSIAQALTFLNLQVQMLETAFAENKREEAAENIGFI 430 Query: 406 SQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQ 465 + + Y +RELL FR + + P A+ ++ QT + + Sbjct: 431 KTGVQECYEDVRELLLNFRTKISNKEFPEAVADLFARFTQQTGITVETVWENGSFLPTQD 490 Query: 466 MQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEP---KEPEGH 522 Q+ ++ I++E++ N KHA A+ + + G T+ I+DNG G + H Sbjct: 491 EQLQMIFILQESLSNIRKHARATHVKFTLSEYG-GRFTMTIQDNGQGFDTEKIGEPTGSH 549 Query: 523 YGLNIMRERAERLGGTLTFSQPSGGGTLVSIS 554 GL+IM+ERA+R+ L + GT VS++ Sbjct: 550 VGLHIMQERAKRIRAVLEIRSQAQQGTTVSLT 581 >UniRef50_A4G5M3 Putative Nitrate/nitrite sensor protein narX n=1 Tax=Herminiimonas arsenicoxydans RepID=A4G5M3_HERAR Length = 672 Score = 390 bits (1003), Expect = e-107, Method: Composition-based stats. Identities = 134/636 (21%), Positives = 240/636 (37%), Gaps = 85/636 (13%) Query: 2 IVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQ 61 ++ + +S + +LL++ + G L+ A AIN AG +RMQSYRL L Sbjct: 32 LLPQRLSNKIVAVLIGFLLLALSAIGTTLMLSWQLEGSAAAINEAGGVRMQSYRLTSVLA 91 Query: 62 S------GSPQL----NAHRQLFQQALHSPV-LTNLNVWYVPE--AVKTRYAHLNANW-- 106 +L + Y+P + T +A + W Sbjct: 92 RLLNEQIEPDELRHNAEQQIRAIDATFARLQRGDPQRPLYLPPTNNIHTVFAQVVERWDV 151 Query: 107 ---------LEMNNRLSKGDLPWYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAG 157 L+ + D Y I+ +V ++ V ++ +E +M + + L Sbjct: 152 ELEPLAYAILQKAQPDRRPDWDRYLTQIDGFVADVNNLVQLIERDSETRMFWLRSWQLVL 211 Query: 158 GIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQ 217 + + ++ P+ +L Q++ + L +E G L FNQ Sbjct: 212 VAMALIGTVTMIYLMFLLIIQPVTRLQEGMQQMNGNKLGVR-LPVESKDEFGQLTLGFNQ 270 Query: 218 MSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDN 277 M+ L Y +LE V +KT +L + R L +LY + L Q LQ + Sbjct: 271 MADRLETSYNNLENRVRQKTAELEDQNRELALLYDSAAFLQRPQPMEMLCDGFLQRITQY 330 Query: 278 EAAE--------------------------------------------------YLELNV 287 A+ L Sbjct: 331 FQADGGSVRVLEAARDNLHMVVHQGISKELVESEHCLKVGDCLCGEAAEKKISMVHNLQQ 390 Query: 288 GENWRISEGQPNPELPMQILPVTMQETVYG--ELHWQNSHVSS--SEPLLNSVSSMLGRG 343 + + + I + E G LH++ V LL ++ ++LG Sbjct: 391 MDQAHALQCHREGFATVSIFHIYAHEQHIGFFNLHFRQPRVFDKHEHALLEALGNLLGVA 450 Query: 344 LYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDN-ATAQSIM 402 + + +++ + EER +A+ LHDS+AQ L++L +Q+ +L S+ + I+ Sbjct: 451 IENIRLAMREREMAISEERNLVAQGLHDSIAQGLTFLNLQVQMLDDSLQKGRLKEVAEIV 510 Query: 403 ADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLAL 462 +N++Y +RELL FR L + DL ++L+ +D + Q+ + L Sbjct: 511 PALRAGVNESYEDIRELLLNFRSRLIKGDLINSLQTTIDKFRRQSGITVNFVASGDGAPL 570 Query: 463 DAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEP---KEP 519 + Q+ ++ I++EA+ N KHA+AS++ + D ++ I DNG G + Sbjct: 571 PYEQQLQIMFIVQEALSNIRKHASASKVEIRLQDNQD--FSLSIHDNGGGFDADTLLSKG 628 Query: 520 EGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 E H G+NIMRERA+R+ + GT V + Sbjct: 629 ESHVGINIMRERAQRIHASFEVHSTPLQGTTVRLQL 664 >UniRef50_Q4FU45 Signal transduction histidine kinase sensor n=2 Tax=Moraxellaceae RepID=Q4FU45_PSYA2 Length = 707 Score = 390 bits (1002), Expect = e-107, Method: Composition-based stats. Identities = 160/670 (23%), Positives = 283/670 (42%), Gaps = 117/670 (17%) Query: 2 IVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQ 61 +++ + A F I +L +ST + S DA+AIN AGS+RM +YR+ + L Sbjct: 24 LLRHSLPLHAWGAIFTISILCFISTLGGGMLAWVSETDAQAINTAGSIRMATYRISFQLA 83 Query: 62 SG-----------------------------------------------SPQLNAHRQLF 74 + + +++ + Sbjct: 84 TNFSENNPFDLNIGLKKNDLEGKKEGTENVKGENRIGEQDKLSPIRKEKTEEISTLIEDM 143 Query: 75 QQALHSPVLTNLNVWYVPEAVKTRYAHLNANW-LEMNNRLSKGDLPWYQANINNYVNQID 133 + L L E + + + + W E+ L D + Y+ +D Sbjct: 144 ESRLAELHDYQLANANDNEGINNQLKQIESQWFRELKPALLSQDAQKFYIVSFKYIEDVD 203 Query: 134 LFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHG 193 FV LQ+ E++ + + + ++ ++R+R V+ P+ QL+ A+ + + G Sbjct: 204 SFVNELQYRNEQRQTWQQILQIVSLVLTVIIMLVGMQRLRQNVLIPVQQLIKANYKFKQG 263 Query: 194 QFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQC 253 + ++ + + E L +FN M+S + RSLE+ V+ KT+ L +A + L + Y Sbjct: 264 KRNTK-VSISGYTEFNALGDSFNDMASTIETHQRSLESEVQIKTQHLVKANQVLSLFYDF 322 Query: 254 SQALNTSQIDVHCFRHILQIVRDNEAAEYLELNV------GENWRISEGQPNPELPMQI- 306 S++L TSQ+ ++ ++ L + +N I G+ EL ++ Sbjct: 323 SKSLTTSQVSLYRLDTLITDFGKILPHLEFTLCIQNKFINNKNAIILHGEKMKELCKKLN 382 Query: 307 --------------LPVTMQETVYGELHWQ------------------------------ 322 P+ Q+ +GEL + Sbjct: 383 CDNCLTKEGVYTKSYPIAHQKVEFGELKVRPKSVLLINSTLFPNNNDGNTPSSQRIQIAK 442 Query: 323 -----------NSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHD 371 + + L+ ++++++ L + ++ QL+L EER+TIARELHD Sbjct: 443 EGRTFFESEIGSELDLENNELIVALTNLISTALSLRKQRQQEHQLILFEERSTIARELHD 502 Query: 372 SLAQVLSYLRIQLTLLKRSI-----PEDNATAQSIMADFSQALNDAYRQLRELLTTFRLT 426 SLAQ LSYL+IQ+++L+R + ++ A+ + + L+ AY+QLR+LL TFRLT Sbjct: 503 SLAQSLSYLKIQISVLERHLKNGSDEQNEASVRQHIDQIKAGLSSAYQQLRDLLITFRLT 562 Query: 427 LQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHAN 486 + + AL E + + ++T+ R+ TL L A Q+ L+QI REA+ N +HA Sbjct: 563 IDNDNFDEALHEAANEFALKGKFEITVSNRVMTLNLSATEQIDLIQIAREALSNISRHAQ 622 Query: 487 ASEIAVSCVTAP-DGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPS 545 A + + D + I DNG+GI + H+GL IM+ERA LGG L S Sbjct: 623 AENVEIDLGYDDEDKYIVMTIVDNGVGISGTVDQTQHHGLMIMKERAHNLGGELIVSNNE 682 Query: 546 GGGTLVSISF 555 GT ++ F Sbjct: 683 SQGTTITAKF 692 >UniRef50_C7I506 GAF sensor signal transduction histidine kinase n=1 Tax=Thiomonas intermedia K12 RepID=C7I506_THIIN Length = 643 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 152/625 (24%), Positives = 269/625 (43%), Gaps = 72/625 (11%) Query: 1 MIVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDL 60 M ++A +A +LLS++S G L + A A+N+AG LRM SY++ Sbjct: 1 MKRNWTLTAKIALFSGAFLLLSLMSIGATLWISWNLEGGAAAVNVAGQLRMLSYKVALAA 60 Query: 61 -QSGSPQLNAHRQLFQQALHSP-VLTNLNVWYVPEA--VKTRYAHLNANWLEMNNRLS-- 114 QL++ QL Q L + YVP ++ RY + A+W + R Sbjct: 61 TDHDDTQLSSDLQLIQDNLVLLHAGSPSRPLYVPWDGIIRQRYDAVRAHWQSLQPRWESA 120 Query: 115 KGDLPWYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRH 174 P + +N +V QID FV +++H + ++ A + + Sbjct: 121 SQAHPVPREEVNQFVTQIDAFVSSIEHRLDFWTTVLHAFQMGLAALVVIGALLMFYAAYL 180 Query: 175 QVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVE 234 V+ P+ +L Q +E G + + +D N +ELG LA FN+M+ +L +Y LE V Sbjct: 181 FVLDPVGRLSRGVQALEQGDYSAR-VDINTTDELGDLAIGFNRMAGQLQAVYDELEERVR 239 Query: 235 EKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGE----- 289 +KT L ++RL LY+ S ++ +Q + +Q+VR A+ L + Sbjct: 240 QKTAALRTEQQRLAALYEVSALVSKAQSLDELSQSFVQVVRRIAGADAAALRWTDESARR 299 Query: 290 -----------------------------------------NWRISEGQPNPEL------ 302 + EG+ P Sbjct: 300 YLLLASDGLPAVLAEEEQCLMSDTCFCGQAQHHGGPQIVQFHRLQPEGRALPGRVACERL 359 Query: 303 ---PMQILPVTMQETVYGEL----HWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQ 355 + +PV Q+ + GE+ H + S + LL++++ L + ++ ++ Sbjct: 360 GYATLLSIPVRAQQRLLGEIDLFFHAEQSADEAQHALLDTLAGHLAAAMESLRSAALERE 419 Query: 356 LLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDN-ATAQSIMADFSQALNDAYR 414 + +ERA +ARELHDS+AQ L++++IQL LL+ ++ + ++++ + ++ Sbjct: 420 AAVSQERAFLARELHDSIAQSLAFMKIQLQLLRTALQAGKVGKIEQVVSELEVGVKESLA 479 Query: 415 QLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQII 474 +RELL FR Q+ D+ ALR + + Q+ + L LD +Q+ +L I+ Sbjct: 480 DVRELLLHFRTRTQEQDIEPALRSTVQKFELQSGLSVDLVFHGHGQPLDPDVQIQVLHIV 539 Query: 475 REAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGE---PKEPEGHYGLNIMRER 531 +EA+ N KHA A++ + + P + D+G G ++ + H G IMRER Sbjct: 540 QEALSNIRKHAKATQARLVVDSLP--RWRFVVSDDGRGYDPEVIAQDGQAHVGQQIMRER 597 Query: 532 AERLGGTLTFSQPSGGGTLVSISFR 556 A +GG L+ GG V++ Sbjct: 598 AAAIGGHLSIEAQPKGGVRVTLELP 622 >UniRef50_A6D1I3 Signal transduction histidine kinase, nitrate/nitrite-specific, NarQ n=1 Tax=Vibrio shilonii AK1 RepID=A6D1I3_9VIBR Length = 583 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 136/583 (23%), Positives = 255/583 (43%), Gaps = 41/583 (7%) Query: 6 PVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQSGSP 65 ++ ++ + +S+ I+L+T+ + +N GS+RM Y+ L + Sbjct: 7 SITKKISFFILILCSISLSGMFISLITVDNIQGRTHIVNQIGSIRMLIYK--SILSTDKS 64 Query: 66 QLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPWYQANI 125 + + + L++P N+ + + + ++ +L A + E + + ++N Sbjct: 65 IRSENIIRINKKLNNP---NIIEYMIKSGLSDQHGNLLAFFQE---NIENQNYESIRSNS 118 Query: 126 NNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVT 185 + +V ID + ++ E + + I A I I +++ + ++ P ++ Sbjct: 119 DEFVKIIDNLIYKVERNTENNIKSLENIQKAFSIMIIIFGIYSIGNLYSRLFKPWMSILD 178 Query: 186 ASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKR 245 S+ I+ G F + +E+ L + N MS + + Y +LE V KT DL+ + Sbjct: 179 ISRSIKSGDFSKKFIVQKHKDEMNELGDSINLMSESIKETYINLENVVYHKTEDLNRKNK 238 Query: 246 RLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWR------------- 292 L+ LY+ + N Q + Q + + +++ + + Sbjct: 239 YLDFLYRACKKFNNEQYSCDMLAPLTQELIELTGIHKVKILINDYQESDNTQIFDFGSIS 298 Query: 293 ---------ISEGQPNPELPMQILP-----VTMQETVYGELHWQNSHVS----SSEPLLN 334 + N + ++ L + YG++ N+ S +E L+ Sbjct: 299 RPDFCKNLSCNLCFDNEKTFIENLSEITIKLKDSNHDYGKIVISNNIKSCINVENEQLII 358 Query: 335 SVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPED 394 + S +L + L + QQLL+++ER TIARELHDS+AQ LS L+I+L++L+ + Sbjct: 359 AFSELLTQSLSVFYKVQQDQQLLILKERNTIARELHDSIAQSLSCLKIKLSILQMDLSNL 418 Query: 395 NATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLD 454 + SI+ + + +N AY QLRELLTTFRL L AL + + K+ Sbjct: 419 DEEQISIIGEMREEVNVAYCQLRELLTTFRLRLDGLGFLPALENTVKEYNKKIGTKINFS 478 Query: 455 CRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIG 514 +P + +HL+QIIRE + N KHA AS++ + D + ++ I D+G G Sbjct: 479 YEIPANKISIHHSIHLIQIIRELLNNIYKHAQASDVTLDLS-MKDNDISLVILDDGCGFS 537 Query: 515 EPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRS 557 +E YGL I+ +RA+ L G G GT ++F Sbjct: 538 TSQENSR-YGLKIIGDRAQSLSGKWDIISSPGKGTEFYLTFPI 579 >UniRef50_B4S080 Signal transduction histidine kinase, nitrate/nitrite-specific n=1 Tax=Alteromonas macleodii 'Deep ecotype' RepID=B4S080_ALTMD Length = 588 Score = 387 bits (995), Expect = e-106, Method: Composition-based stats. Identities = 161/574 (28%), Positives = 258/574 (44%), Gaps = 45/574 (7%) Query: 26 TGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQSGSPQLN---AHRQLFQQALHSPV 82 + + DA+A+N+AGSLRMQ+YR+ +Q + F L++ V Sbjct: 1 MFTTVFMSDGAQFDAQAVNVAGSLRMQTYRIHSVMQDSPGDIETINQLVDEFDLTLNTGV 60 Query: 83 LTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPWY-------QANINNYVNQIDLF 135 L N + + +A + NW E +L + +L N V I+L Sbjct: 61 LVNQQALWDNGDIAKHHAIVANNWNEQVKQLIQTNLASPSNSNTSSLEVFNKLVEDIELL 120 Query: 136 VLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQF 195 V+A Q YAE + + + L+ + + + PL++L + +++I G F Sbjct: 121 VVAYQKYAEINIANIRLVQSLALFSTLILIAIAMMIVHRHIEQPLSKLTSVARQIGQGDF 180 Query: 196 DSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQ 255 + +T EL LLA+T N+MS L++ LE ++ KTR L + + LE+L+Q S+ Sbjct: 181 TARAEET-GKGELALLARTINKMSGSLYRSKSQLEEQIKRKTRKLTRSNQSLELLFQVSR 239 Query: 256 ALNTSQIDVHCFRHILQIVRDNEAAEYLELNV-------------------GENWRISEG 296 LN + F+ +L + D + L+L + + + Sbjct: 240 RLNEVEPGSADFQPLLNKLADVTGVKDLDLCIMTAQGTGPYEHLMSSEKTIPDKCQQQLC 299 Query: 297 QPNPELPMQILP--------VTMQETVYGELHWQNSH----VSSSEPLLNSVSSMLGRGL 344 E P + + + YG L L +++ + GL Sbjct: 300 HDCTEHDSLFPPVNGQMKYQLNIGDQHYGVLVVSLDEGSILEDWQHQLFEAIAEQVANGL 359 Query: 345 YFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDN--ATAQSIM 402 + +++ LM ER IARELHDSLAQ LSYL+IQ+T L+R +++ ++ Sbjct: 360 SMKHQNEQRRRIALMNERTVIARELHDSLAQALSYLKIQVTRLQRLQQKESAQEQIDQVI 419 Query: 403 ADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTS-AKLTLDCRLPTLA 461 + L AY +LRELLTTFRL L + +AL + + LQN++ TL+ + + Sbjct: 420 DELKNGLGAAYSELRELLTTFRLKLDGQGIKAALEQTISQLQNRSDDFNFTLNYHVSNIP 479 Query: 462 LDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEG 521 Q ++HLLQI REA NA H+ I +S + + ++DNGIGI E Sbjct: 480 FTPQEEIHLLQIAREATQNAFYHSQGFNIDISITSNSLSEVILTVKDNGIGIPEDPNKLN 539 Query: 522 HYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 HYGL IM+ER+ L G L+ + GT V SF Sbjct: 540 HYGLAIMKERSRNLDGELSVKRNDERGTTVMFSF 573 >UniRef50_C5T4I9 GAF sensor signal transduction histidine kinase n=2 Tax=Acidovorax RepID=C5T4I9_ACIDE Length = 653 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 144/620 (23%), Positives = 245/620 (39%), Gaps = 67/620 (10%) Query: 1 MIVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDL 60 M K P++ L +L+++ S G+ L A A+N AG LRM R+ Sbjct: 16 MRTKSPLTFKLLAMGGGFLLVALASIGLTLWVAWKLEGGAAAVNEAGRLRMNMLRMVLVQ 75 Query: 61 QSGSP-QLNAHRQLFQQALHSP-VLTNLNVWYVPE--AVKTRYAHLNANWLEMNNRL--- 113 Q+ SP ++ H + F +L +VP + R+ + W + Sbjct: 76 QTESPEEVQRHARQFDASLELLRTGDPSRPLFVPWGADTRERFEEIRTTWGGLRKEWAVG 135 Query: 114 SKGDLPWYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIR 173 D A +++V+++D FV A++ ++ L+ + Sbjct: 136 LPPDRARSLAQADSFVHKVDGFVEAIEIQIAGWTAVLHIFQLSMMAVAIAAAITFMAVSY 195 Query: 174 HQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASV 233 V+ P++QL A R+ G L +E G L+ FN M+ L + LE V Sbjct: 196 LLVLNPVSQLQQAQARLRQGDLGVR-LPVEADDEFGQLSAGFNLMAHALQASHEELEQKV 254 Query: 234 EEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFR----HILQIVRDNEAAEYLELNVGE 289 EKT ++ +RL LY+ S +++ + I ++ + AA E Sbjct: 255 REKTANIAVQNQRLAALYEVSALASSATGLEALAQGFVKQIRRVAGADAAAVRWSDEANE 314 Query: 290 N----------------------------------------------WRISEGQPNPELP 303 + Sbjct: 315 RYVLLAGDGMPVAMTEEEHCLHTGACMCGQPQSQARTRVIPIVPSTTLAFPHCRDAGFQT 374 Query: 304 MQILPVTMQETVYGELHWQ----NSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLM 359 M +PV MQ+ + GE++ +H LL +++ L + +A ++ + Sbjct: 375 MVAIPVQMQQRLLGEINLFFRSPTAHTDEVRDLLEAMTRHLASAMEGLRATALEREAAVA 434 Query: 360 EERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSI-MADFSQALNDAYRQLRE 418 EER+ +ARELHDS+AQ L++L+IQ LL+ ++ + + A+ M + + + Y +RE Sbjct: 435 EERSLLARELHDSIAQSLAFLKIQTQLLRDAVAKGDVVARDRSMGELDVGVRECYADVRE 494 Query: 419 LLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAV 478 LL FR + D+ +ALR L ++QT TL L L +Q+ +L +++EA+ Sbjct: 495 LLVHFRTRTSEEDIEAALRATLSKFEHQTGIATTLTMAGHGLPLPPDVQIQVLHMVQEAL 554 Query: 479 LNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEG--HYGLNIMRERAERLG 536 N KH+ A+ + + P + DNG G P H GL IMRERA+R+G Sbjct: 555 SNVRKHSGATRVELHVHRHP--RWRFEVLDNGTGFRVDAVPPDSLHVGLGIMRERAQRIG 612 Query: 537 GTLTFSQPSGGGTLVSISFR 556 + G G V I Sbjct: 613 AVVQVESSPGEGARVCIELP 632 >UniRef50_B2CI54 Integral membrane sensor signal transduction histidine kinase n=1 Tax=Pantoea sp. MMB051 RepID=B2CI54_9ENTR Length = 515 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 232/554 (41%), Positives = 321/554 (57%), Gaps = 55/554 (9%) Query: 2 IVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQ 61 + +R V+ SLARA F IVLL++ + ++LLTL++S RDAEA+N+AGSLRMQSYRL +D Sbjct: 12 MSERSVTRSLARALFAIVLLAVFCSFLSLLTLSASQRDAEALNMAGSLRMQSYRLAWDAS 71 Query: 62 SGSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPWY 121 + L A +Q+++ SP L L +VP++VK RY L A+W + L GD + Sbjct: 72 AHPAALAADIASYQRSVQSPALLALRHAWVPDSVKARYRELLASWQSLQPELQTGDSRRF 131 Query: 122 QANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLN 181 Q N++ YV QID FVLALQ +AE KM L V L I I Sbjct: 132 QQNVSLYVEQIDSFVLALQRWAELKMKLAVGACLLSFIAILL------------------ 173 Query: 182 QLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLH 241 LAK F +MS EL K Y LE +V+EKT L Sbjct: 174 -----------------------------LAKAFCRMSGELEKQYLWLEQAVKEKTAHLR 204 Query: 242 EAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPE 301 +A RRL++LYQCS+ L + L + +++E + L+ W++S GQ + Sbjct: 205 QANRRLKLLYQCSEILRGH---DKAYSRALALAKEHENLSAVALSAPPRWQLSVGQEDTA 261 Query: 302 LPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEE 361 L LP+ ++T+ G L WQ S +S L+ ++SML R L ++A++ + LLLMEE Sbjct: 262 LAWHSLPL--EQTIGGVLRWQAS--ASEPQLMKGLASMLARSLQLDEAEEKVRHLLLMEE 317 Query: 362 RATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLT 421 RATIARELHDSLAQ L YLRIQ+T LK + +++A A +I+++ AL +A RQLRELLT Sbjct: 318 RATIARELHDSLAQSLVYLRIQMTRLKGIVGKESAPA-AIVSEVDAALAEANRQLRELLT 376 Query: 422 TFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNA 481 TFRL+++ ADL +AL +++ L+ QT A + L L+A QVH+LQI+REA+LNA Sbjct: 377 TFRLSIEPADLATALAQVIAQLRPQTEAVIQLTGDTQPQHLNAHQQVHVLQIVREALLNA 436 Query: 482 MKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTF 541 ++HA ASEI V + + + DNG G +P E GHYGL IM+ERA+ LG TL Sbjct: 437 IRHAQASEIEVRVARPEEKLLQIEVNDNGQGFNQPGEKPGHYGLAIMQERAKSLGATLEI 496 Query: 542 SQPSGGGTLVSISF 555 Q GGT VS+ F Sbjct: 497 GQTEYGGTRVSLRF 510 >UniRef50_Q7NV12 Transmembrane nitrate/nitrite sensor kinase transcription regulator protein n=1 Tax=Chromobacterium violaceum RepID=Q7NV12_CHRVO Length = 632 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 140/605 (23%), Positives = 247/605 (40%), Gaps = 68/605 (11%) Query: 21 LSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQSGSPQ--LNAHRQLFQQAL 78 ++++S G L A AIN GSLRM+++R Y + + +P+ L F Q L Sbjct: 28 VALISIGYTLALSWRLEGGAAAINDVGSLRMRTFRAAYLMSTQAPERVLRDEVAGFDQTL 87 Query: 79 HSPV-LTNLNVWYVPE--AVKTRYAHLNANWLE-MNNRLSKGDLPWYQAN-INNYVNQID 133 ++P+ ++ + L W + L D A ++ +V +ID Sbjct: 88 ARLKRGDPARPLFLPDNRDIRDQERRLEQRWRNDIRPLLLAADGAQPSAQRLHGFVAEID 147 Query: 134 LFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHG 193 V L+ E L+ + + V+ P+ L A +R+ G Sbjct: 148 NLVSLLERDNENHTNLLRMFQMVLIAMALAGAVTMAYMLFLMVINPVRALSDAMRRLREG 207 Query: 194 QFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQC 253 + D+ + + +ELG+LA+ FNQM+ LY++LE+ V +KTR++ E RL+ LY Sbjct: 208 ELDTR-VKVDRQDELGMLAEGFNQMAERAQDLYQNLESKVAQKTREVEEQNLRLKTLYDM 266 Query: 254 SQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVG------------------------- 288 + L+ + + ++ + A+ + Sbjct: 267 TSFLHQQRALDETCQGFIRRLMQLTGADAANARLVDPERGKLDQIAQQGLPAEMALNEEC 326 Query: 289 -------------------------ENWRISEGQPNPELPMQILPVTMQETVYG--ELHW 321 E I + + + + Q G L++ Sbjct: 327 IPDDACHCGEAVQQPFAVLRHIGELEGEEIRHCRKAGFASIAVFHIRNQREDVGIFTLYF 386 Query: 322 QNSHVSS--SEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSY 379 + V S + L+ ++ LG + + +Q + EER +A+ LHDS+AQ LS+ Sbjct: 387 RQKRVLSMAEQMLIETLGQHLGVAIENQRLGAVERQFAVSEERNLMAQGLHDSIAQSLSF 446 Query: 380 LRIQLTLLKRSIPEDNAT-AQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALRE 438 L +Q +L+ ++ A+ +A + + Y +RELL FR + Q + P A+R Sbjct: 447 LNLQTQMLEDAMNSREEALARENLAFIRAGVQECYEDVRELLLNFRTRISQQEFPEAVRT 506 Query: 439 MLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAP 498 +L + QT L+ R LD Q Q+ + I++EA+ N KHA ASE+ V Sbjct: 507 LLQRFEQQTRVPARLEMRGEGKPLDPQQQLQVFFILQEALSNIRKHAEASEVEVEIDNT- 565 Query: 499 DGNHTVYIRDNGIGIGE---PKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 + ++ IRDNG G + H G++IM+ERA+R+ + GT V ++ Sbjct: 566 -ASFSMRIRDNGRGFDSGQLAAKSARHVGMSIMQERAKRIHSHIQIRSAPTQGTTVELTL 624 Query: 556 RSAEG 560 E Sbjct: 625 PKEER 629 >UniRef50_C0DXB9 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DXB9_EIKCO Length = 632 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 134/629 (21%), Positives = 245/629 (38%), Gaps = 77/629 (12%) Query: 5 RPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDL--QS 62 + +S L +++++ S LL A AIN GSLR++S+R+ + + Sbjct: 5 KSLSVRLKLLTLLWLVIAVASISYTLLLSWRLEGSAAAINDIGSLRLRSFRIALLIRENA 64 Query: 63 GSPQLNAHRQLFQQALHS-PVLTNLNVWYVPEA--VKTRYAHLNANW-LEMNNRLS---K 115 G+ ++ Q + L + ++P V R+ L+ W + + Sbjct: 65 GAEEIEQRLQQYDSILDNVRHGDRSRPLFLPPDKVVWQRFNELDQQWRQNIRPAFQVAYQ 124 Query: 116 GDLPWYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQ 175 + P + +++++D V A++ R + + + + F + + Sbjct: 125 QNRPVTDKQLQPFLSRLDNLVSAVEQTNTRYISWLRLFQSCLLVLVVMSSAFMVFLLYWW 184 Query: 176 VVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEE 235 ++ PL L I GQF + + E + FNQMSS LH+LY LE V E Sbjct: 185 IIKPLQHLQQGVAAIHDGQFG-IQIPIDHSAEFARVDNGFNQMSSSLHQLYSHLEEEVLE 243 Query: 236 KTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEY------------- 282 KTRDL LE LY S+ L+ +Q LQ + + AA+ Sbjct: 244 KTRDLASKHHTLETLYFFSRFLSQTQTTTEAAEVFLQKMLEMVAADAGSIRLIDFKRQRM 303 Query: 283 ---------LELNVGENWRI---------------------------------SEGQPNP 300 L E + SE Sbjct: 304 DLVSQINLPDSLQTAEACQRFDDCLCGHAVVHDDWQPIQFVREPDSHAFDTDNSECSRMG 363 Query: 301 ELPMQILPVTMQETVYGELHW----QNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQL 356 ++I + + +G + + + L ++ S G + + +QL Sbjct: 364 FQQLRIFKIQYKAQDFGMVTLYFKQKEPVAMADTELWEALCSQFGVVVSNLRLIDESRQL 423 Query: 357 LLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIP-EDNATAQSIMADFSQALNDAYRQ 415 +++ER IA+ LHDS+AQ L++L +Q+ +L+ ++ + + + + Y Sbjct: 424 AVLQERNLIAQGLHDSIAQALTFLNLQVQMLESALQNHEQEQINENLHYIKDGIQECYDD 483 Query: 416 LRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIR 475 +RELL FR + D ++ + D Q QT + L L+++ Q+ ++ I++ Sbjct: 484 VRELLINFRTKINNKDFTEVVQTLTDRFQRQTQIGVHLHWHGNGPQLNSEQQLQVVFILQ 543 Query: 476 EAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEP----EGHYGLNIMRER 531 E++ N KH+ A+++ + D + I DNG G + H GLNIM ER Sbjct: 544 ESLSNIRKHSQATQVDIRFNNRQD--FVMEIEDNGRGFNIERLKEQHSGNHVGLNIMHER 601 Query: 532 AERLGGTLTFSQPSGGGTLVSISFRSAEG 560 A+R+ L+ G T V+++ E Sbjct: 602 AQRIRAQLSLHSKPGS-TRVTLNLPYEER 629 >UniRef50_A1W358 Signal transduction histidine kinase, nitrate/nitrite-specific, NarQ n=7 Tax=Burkholderiales RepID=A1W358_ACISJ Length = 638 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 155/631 (24%), Positives = 246/631 (38%), Gaps = 69/631 (10%) Query: 1 MIVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDL 60 M K +S L +L+++ S G L A A+N AG LRM R+ Sbjct: 1 MRKKPTLSTKLLAMGTVFLLVALASIGFTLWVTWKLEGGAAAVNEAGRLRMNMLRMVLAQ 60 Query: 61 QSGSPQLNAHRQ-LFQQALHSP-VLTNLNVWYVP--EAVKTRYAHLNANWLEMNNRLSKG 116 Q+ SPQ A + F + L +VP + + RY H+ WL + N Sbjct: 61 QNESPQEFARLETRFNEGLELLRTGDPARPLFVPWSDDTRERYEHIRRQWLLIENDWKAA 120 Query: 117 ----DLPWYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRI 172 A + +V +D FV A++ R ++ L + Sbjct: 121 AHYESSAEAVARADAFVLDLDSFVEAIEIQIVRLTAVLHLFHLFMVALAIGSAVAFMALS 180 Query: 173 RHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEAS 232 V+ P+ +L A R+ G + L+ +E G L FN M+ L + LE Sbjct: 181 YLLVLNPVTRLQQALARLRKGDLGTR-LEVEADDEFGQLTAGFNLMAHALQTSHEDLERK 239 Query: 233 VEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHC----FRHILQIVRDNEAAEYLELNVG 288 V EKT + +RL LY S + + I ++ + AA Sbjct: 240 VREKTATIEVRNQRLAALYAVSALAAEAGSLEELTQGFVQQIRRVAECDAAAVRWSDEAN 299 Query: 289 EN----------------------------------------------WRISEGQPNPEL 302 E ++ + Sbjct: 300 ERYVLLASDGLPQSLVEHEHCVVTGACECGQAQGQARMRVIPIMPVGGLQLPHCREAGFE 359 Query: 303 PMQILPVTMQETVYGELHWQNS----HVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLL 358 + +PV M + + GE+ + LL++++ L + +A ++ + Sbjct: 360 TVVSIPVQMHQRLLGEVTLLYRSPLELSAEMRELLSTMAHHLATSMESLRASALEREAAV 419 Query: 359 MEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSI-MADFSQALNDAYRQLR 417 +ER+ IARELHDS+AQ L++L+IQ LL+ ++ +DN A+ MA+ + + Y +R Sbjct: 420 AQERSLIARELHDSIAQSLAFLKIQTQLLRDAVAKDNTEARDRSMAELDTGVRECYADVR 479 Query: 418 ELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREA 477 ELL FR Q D+ +ALR L ++QT A L L L +Q+ +L I++EA Sbjct: 480 ELLVHFRTRTQDEDIEAALRATLSKFEHQTGAATALSMAGHGLPLAQDVQIQVLHILQEA 539 Query: 478 VLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEG--HYGLNIMRERAERL 535 + N KHA+A + + P ++D+G G P H GL IMRERA+R+ Sbjct: 540 LSNVRKHADARRVELRVQRHP--RWRFEVQDDGRGFDPDSVPPDSLHVGLGIMRERAQRI 597 Query: 536 GGTLTFSQPS-GGGTLVSISFRSAEGEESQL 565 G L GGGT V + EE L Sbjct: 598 GAHLELVSRPGGGGTCVVLELPPTTREEPAL 628 >UniRef50_Q8VUK2 Putative nitrate/nitrite sensor protein n=1 Tax=Halomonas halodenitrificans RepID=Q8VUK2_PARHA Length = 644 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 170/607 (28%), Positives = 275/607 (45%), Gaps = 55/607 (9%) Query: 2 IVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYR-----L 56 +++ + A + + I ++++S + + S DA AIN+AGSLRM +++ L Sbjct: 3 LLQHSLVARIVASLLAISAMALVSIAVTMTVANDSRGDAAAINMAGSLRMNTHQILTALL 62 Query: 57 GYDLQSGSPQ---LNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANW-LEMNNR 112 YDL + + A + F+ L SP LT+ A++ ++ L + W ++ Sbjct: 63 RYDLHPDAAHDDGVAALVERFETRLASPELTDALPDAADHALRRQHRELLSRWTHDILPA 122 Query: 113 LSKGDLPWYQA------NINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVF 166 +++ + V ID V L+ +E K+ L++ + +V Sbjct: 123 INRARAADDRQGPDPAPAFEALVGDIDALVTLLERNSESKIQLLIILQFLFLALTVVVVA 182 Query: 167 FTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLY 226 L IRH +V PL L+ ++ F +EL LL +TF+ M+ EL Y Sbjct: 183 IALYDIRHNLVTPLRHLLVLAREAARRNFGYRTH-FRGNDELALLGRTFDNMAEELATSY 241 Query: 227 RSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQID-----VHCFRHILQIVRDNEAAE 281 LEA K +L + R ++V++ S+AL D R + Q++ Sbjct: 242 AELEAHASLKQAELERSNRAMQVMHDGSRALYGGGNDLCASAAPMLRQLEQLLDVGPIRL 301 Query: 282 YLELNVGENWRISEGQPNPELP---------------------------MQILPVTMQET 314 L + +P P +LPV++ E Sbjct: 302 SLNDPHDDRQIPILATHSPHRPEYCRDHECHACLIDPQPLKLEQAQQGECLLLPVSVGEL 361 Query: 315 VYGELHW----QNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELH 370 + G L S LLN+++ L +Y + + QQ+ LM ER IARELH Sbjct: 362 MLGTLEVWHSRSQPLSDSVRRLLNALADQLATAVYLQRRIEEQQQVTLMNERTIIARELH 421 Query: 371 DSLAQVLSYLRIQLTLLKRSIPEDNATAQSIM--ADFSQALNDAYRQLRELLTTFRLTLQ 428 DSLAQ LSYL++Q+ L+R ++ + + L+ AYRQLRELLTTFRL L+ Sbjct: 422 DSLAQSLSYLKMQVARLERMQQKEAPRERQAAVFDELRTGLDSAYRQLRELLTTFRLKLE 481 Query: 429 QADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANAS 488 L SAL + + + L+ +P L+ ++H+LQ++REA+ N +KHANA Sbjct: 482 GPGLASALHQTAREFGKRLGYPVILEVDVPPHLLNPNEEIHVLQVVREALANVLKHANAH 541 Query: 489 EIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGG 548 A++ + V I D+GIG+ + P HYGL IMR+RA+ LGG +T GGG Sbjct: 542 WAAITINF-QEARLHVVIEDDGIGLDDDSSPPMHYGLVIMRDRADTLGGEMTLHNRPGGG 600 Query: 549 TLVSISF 555 T +++ F Sbjct: 601 TRLALVF 607 >UniRef50_C4KA07 GAF sensor signal transduction histidine kinase n=2 Tax=Betaproteobacteria RepID=C4KA07_THASP Length = 655 Score = 380 bits (976), Expect = e-104, Method: Composition-based stats. Identities = 147/646 (22%), Positives = 248/646 (38%), Gaps = 88/646 (13%) Query: 1 MIVKRP-VSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYD 59 M ++ +S + L+++ + + L A AIN AGSLRM+ YR+ + Sbjct: 9 MFIRGSGLSVKITGMLLGFFLVALAAIALTLFISWRLEGAAAAINDAGSLRMRLYRVAHH 68 Query: 60 LQSG----------SPQLNAHRQLFQQALH-SPVLTNLNVWYVPEA--VKTRYAHLNANW 106 L + L A F + L +VP ++ + ++ W Sbjct: 69 LARADLHTSDRQGFAGDLRARVDDFDRILGVLRRGDPSRPLFVPREAGIQQVLSGMSEEW 128 Query: 107 LEMNNRLSKGDLPW------------YQANINNYVNQIDLFVLALQHYAERKMLLVVAIS 154 + + +YV I+ FVL ++ R ++ Sbjct: 129 SVQLRPILLAIAADPDPANLHRRGLEFDRAARDYVEDINDFVLRMEQSYARNTNILRTSQ 188 Query: 155 LAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKT 214 + LR V+ P+ +L +R+ FD+ + +E G L+ Sbjct: 189 VILVALAVIGTILLLRFFFLTVIRPVFELHEGVKRMGQEDFDAR-VPVLSQDEFGELSAG 247 Query: 215 FNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIV 274 FN+M++ L +Y +LE V KTR L E R LE+LY+ L + L+ V Sbjct: 248 FNRMAAHLQNVYDTLEERVVAKTRSLEEKNRELEILYEIVAFLREPNDVDTLCKGFLERV 307 Query: 275 RDNEAA----------------------------EYLELNVGENWRISE----------- 295 + A + E+ E Sbjct: 308 QKTMGASASSARLLDLESRNLCMIVHDGLGDDFLDREEVLACGECVCGEAAQGSGLSLTL 367 Query: 296 -------------GQPNPELPMQILPVTMQETVYGELHWQNSHVSS----SEPLLNSVSS 338 + + +T + G + + LL ++ Sbjct: 368 DVRNAALAVTRDACRRAGFRTVSATSITASKRALGVFNLYFDQPDAIGDADRQLLEALGQ 427 Query: 339 MLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNAT- 397 LG + + ++L + EER +ARELHDS+AQ L++L +Q+ +L+R++ E+ A Sbjct: 428 QLGIAIENQRLHARERELAVSEERNLLARELHDSIAQGLAFLNLQVQMLERALAENRAAD 487 Query: 398 AQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRL 457 + + + + ++Y +RELL FR ++Q DL +A+ L L QT LD + Sbjct: 488 VSTTVEMLRRGIQESYEDVRELLVHFRTRVEQQDLDAAIAAALRRLAEQTGIATDLDVQG 547 Query: 458 PTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPK 517 LD + + +L II+EA+ N KHA AS ++V DG V +RD+G+G E + Sbjct: 548 DGAPLDPEAETQVLYIIQEALSNVRKHAGASTVSVGVRRGRDG-LAVTVRDDGVGFAEDR 606 Query: 518 EP---EGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEG 560 + E H GL IMRERA R+GG G GT + + Sbjct: 607 DASDSEAHIGLQIMRERAMRIGGRFAVRSSPGRGTEIRLELPRTNE 652 >UniRef50_C1D9F9 NarX n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D9F9_LARHH Length = 637 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 155/628 (24%), Positives = 264/628 (42%), Gaps = 71/628 (11%) Query: 1 MIVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDL 60 M +R ++ L ++L+++S G L A AIN AGSLR ++Y L Y + Sbjct: 10 MPWQRSLATKLMLLSLLWLMLAMVSIGFTLHLSWKLEGGAAAINDAGSLRKRTYHLAYLI 69 Query: 61 QSGSP--QLNAHRQLFQQALHSP-VLTNLNVWYVPE--AVKTRYAHLNANWL-EMNNRLS 114 S +P ++ RQ F+ L++ ++P+ V A ++A W E++ + Sbjct: 70 ASHAPAARIEHERQDFRVTLNNLRQGDPARPLFLPDNPEVHRMAALIDARWQNEVHPYVQ 129 Query: 115 ---KGDLPWYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRR 171 +G++ + + VN I+L V ++ R L+ + L Sbjct: 130 RALRGEIQLTAVDFEDVVNDINLLVHLIELDNARNTTLLRFFQTSLIAMALIGCVTMLYL 189 Query: 172 IRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEA 231 + V+ P+ QL +++ G + + +E G+L++ FN+M+ L LY +LE Sbjct: 190 LYLLVIQPVRQLGAGMRKLHDGDLGAR-VKVASRDEFGVLSEGFNEMARRLQDLYANLED 248 Query: 232 SVEEKTRDLHEAKRRLEVLYQCSQALN--TSQIDVHCFRHILQIVRDNEAAEY------- 282 V EKT + E R+L LYQ + L+ +Q LQ V A+ Sbjct: 249 KVREKTLSVEEKNRQLTALYQVTSFLHRPQTQTLDEMGEGFLQRVMALVGADAASLKFVD 308 Query: 283 ---------------LELNVGENWRISEGQPNPELPMQILPVTM---------------- 311 LNV E E P Q LPV + Sbjct: 309 AQRGKLDQIVSVGLPDSLNVHETCVSVEQCPCGAALKQALPVAVHLNEVCAGDWPCRNTG 368 Query: 312 -------------QETVYGELHWQNSH--VSSSEPLLNSVSSMLGRGLYFNQAQKHFQQL 356 Q L ++ L+ +++S LG + + + +QL Sbjct: 369 FASLAVFHVRYHGQNVALLTLLFRTPRSVAEPDANLIETLASHLGTAIESRRLAERERQL 428 Query: 357 LLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPE-DNATAQSIMADFSQALNDAYRQ 415 + EER +A+ LHDS+AQ LS+L +Q+ +L+ ++ ++ AQ +A + + + Y Sbjct: 429 AVAEERNLMAQGLHDSIAQSLSFLNLQVQMLESALEAGESEAAQENLAFIREGVAECYED 488 Query: 416 LRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIR 475 +RELL FR + + + P A+R +L + Q L L L+ + Q+ ++ I++ Sbjct: 489 VRELLLNFRTRISKEEFPDAVRTLLARFEQQARVLTHLQLEGEGLPLNPEQQLQVIFILQ 548 Query: 476 EAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGE---PKEPEGHYGLNIMRERA 532 EA+ N KHA A ++ V+ D + I D+G G + H GL+IMRERA Sbjct: 549 EALSNIRKHAAAGKVEVNIRNGQD--FEMDIVDDGYGFDQSALAARQARHVGLSIMRERA 606 Query: 533 ERLGGTLTFSQPSGGGTLVSISFRSAEG 560 R+ T+ G GT VS+ E Sbjct: 607 TRIAATVDIMSRPGEGTRVSLVLPHKER 634 >UniRef50_A9LZC9 Two-component system, NarL family, nitrate/nitrite sensor histidine kinase n=9 Tax=Neisseria RepID=A9LZC9_NEIM0 Length = 536 Score = 374 bits (960), Expect = e-102, Method: Composition-based stats. Identities = 130/529 (24%), Positives = 224/529 (42%), Gaps = 26/529 (4%) Query: 49 LRMQSYRLGYDLQSGSP--QLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRY----AHL 102 +RMQ+YRL Y GSP Q++ F+++L+ ++ +P Y + L Sbjct: 1 MRMQAYRLAYMAGEGSPRSQIDNQVDEFEKSLNRISQSDAIHPLIPSDTPLAYDLIQSML 60 Query: 103 NANWLEMNNRLSKGDLPWYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIF 162 +W + Q ++ + I+LF+ AL++ E+ + A + Sbjct: 61 IIDWQAHILPPLQSYRRPTQVDLYRFAGNIELFLQALENANEKNTWWLRRFQWAIMLMTL 120 Query: 163 TLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSEL 222 L + V+ PL L ++RI FD P+ E + + FNQM L Sbjct: 121 VSSVLMLFWHQIWVIRPLQALREGAERIGRRCFD-IPVPEGGTPEFKQVGRCFNQMGGRL 179 Query: 223 HKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEY 282 LY LE V E+TR L + + L +LYQ ++ L+ S I H L + A+ Sbjct: 180 KILYDDLEGQVAEQTRSLEKQNQNLTLLYQTTRDLHQSYIPQQAAEHFLNRILPAVGADS 239 Query: 283 LELNV--GENWRISEGQPNPELPM--------QILPVTMQETVYGELHWQNS----HVSS 328 + + G + +S + +I P+ Q G L Sbjct: 240 GRVCLDGGSDVYVSIHHADCGTAASDLGKYHEEIFPIEYQNETLGRLLLSFPNGISLDED 299 Query: 329 SEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLK 388 LL ++ LG L + ++ + L +++ER IA+ LHDS+AQ L++L +Q+ +L+ Sbjct: 300 DRILLQTLGRQLGVSLAGAKQEEEKRLLAVLQERNLIAQGLHDSIAQALTFLNLQVQMLE 359 Query: 389 RSIPED-NATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQT 447 + E+ A + + + Y +RELL FR + + P A+ ++ QT Sbjct: 360 TAFAENKREEAAENIGFIKTGVQECYEDVRELLLNFRTKISNKEFPEAVADLFARFTQQT 419 Query: 448 SAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIR 507 + T Q+ ++ I++E++ N KHA A+ + + G T+ I+ Sbjct: 420 GTTVETVWENGTHLPTQDEQLQMIFILQESLSNIRKHARATHVKFTLSEHG-GRFTMTIQ 478 Query: 508 DNGIGIGEP---KEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSI 553 DNG G + H GL+IM+ERA+R+ L GT VS+ Sbjct: 479 DNGQGFDTEKIGEPTGSHVGLHIMQERAKRIRAVLKIYSQPQQGTTVSL 527 >UniRef50_A2SGG0 Signal transduction histidine kinase, nitrate/nitrite-specific, NarQ n=2 Tax=Burkholderiales RepID=A2SGG0_METPP Length = 643 Score = 370 bits (950), Expect = e-101, Method: Composition-based stats. Identities = 153/629 (24%), Positives = 260/629 (41%), Gaps = 73/629 (11%) Query: 2 IVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQ 61 + + ++A L I+++++ S + A A+N AG LRMQ++R Sbjct: 12 LQRASLAAKLGALGSLIMVVALGSIAFTVWVTWQLEGGAAAVNEAGRLRMQTWRYAQVAS 71 Query: 62 SGS-PQLNAHRQLFQQALHSP-VLTNLNVWYVPEA--VKTRYAHLNANWLEMNNRLSKGD 117 + PQL A Q + L +VP + + + W + +S+G Sbjct: 72 AQDLPQLPALAQQYDATLALLDAGDPARPLFVPRDEDTRAALQAVRSRWQALQRAISEGA 131 Query: 118 LPWYQANIN-NYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQV 176 P + + V +ID V ++ + +R ++ A+ L + Sbjct: 132 TPLQAGQLAGDLVIEIDHLVTGIEAHLQRWTSILSALQFTLLALALAAGVALLYAAHLFI 191 Query: 177 VAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEK 236 PL +L + + G + +D +E G +A FN M+ L LYR LE V EK Sbjct: 192 FQPLARLQRGLEAVARGDLGAR-VDVETHDEFGEVADGFNHMAMRLEDLYRGLETKVAEK 250 Query: 237 TRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQ-----------IVRDNEAAEYLEL 285 T L + RL LY+ S+ + + + ++ ++R ++A + L Sbjct: 251 TEHLRTERERLAALYEASRRVAQAASLDELAQGFVRQFREVARADAALLRWHDAEQGRML 310 Query: 286 NVGENWR-------------------------------------------ISEGQPNPEL 302 + + + Sbjct: 311 MLAADRVPAAMLEHERCLAPGDCHCGNGAAPGGPRTITIHALTDGDTGDSAGTCRRFGFQ 370 Query: 303 PMQILPVTMQETVYGE--LHWQN---SHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLL 357 + LPV +Q+ GE L W++ + LL +++ L G+ +AQ ++ Sbjct: 371 RVLTLPVLLQDQTLGEVDLLWRDATRPVLDDDRALLEGLAAQLAGGIESVRAQALQREAA 430 Query: 358 LMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPE-DNATAQSIMADFSQALNDAYRQL 416 + EER IARELHDS+AQ L++++IQL +L+ ++ D A ++ + + ++ + Sbjct: 431 VSEERGFIARELHDSIAQALAFMKIQLQMLRGALRRGDPAATTRVVDELDAGVRESLADV 490 Query: 417 RELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIRE 476 RELL FR A+L +ALR L Q+QT LD R P L L +QV LL +++E Sbjct: 491 RELLLHFRTRSDGAELAAALRATLQKFQHQTGLPAQLDVRGPVLPLAPDVQVQLLHVVQE 550 Query: 477 AVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKE-----PEGHYGLNIMRER 531 A+ N KHA A ++ V+ P+ +V +RD+G G +GH GL IMRER Sbjct: 551 ALSNVRKHAQARQVWVTLDPRPE--LSVTVRDDGRGFDLAARNSDDGDDGHVGLRIMRER 608 Query: 532 AERLGGTLTFSQPSGGGTLVSISFRSAEG 560 A +G + + G GT V I+ S Sbjct: 609 AAGIGAEVEITSTRGEGTQVRIAVPSRPA 637 >UniRef50_B9Z081 Multi-sensor signal transduction histidine kinase n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z081_9NEIS Length = 645 Score = 365 bits (937), Expect = 3e-99, Method: Composition-based stats. Identities = 137/630 (21%), Positives = 244/630 (38%), Gaps = 78/630 (12%) Query: 7 VSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQSGS-- 64 +SA + A ++L+++ + G L A AIN AGSLRM++ RL D+Q Sbjct: 17 LSAKIIGALLAVLLMALSAIGATLWLSWQLEGGAAAINDAGSLRMRATRLSLDVQRFHDG 76 Query: 65 ----PQLNAHRQLFQQALH-SPVLTNLNVWYVPE--AVKTRYAHLNANWLEMNNRLSK-- 115 + + Q L + VP + + ++ W L + Sbjct: 77 KLPREVVQNSIVRYDQTLAVLRRGDSARPLLVPRTAKILLDFKNVADQWHGRIRPLGQAI 136 Query: 116 ---------GDLPWYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVF 166 + +Q+ ++YV+ I+ FV ++ Y R + L Sbjct: 137 LAAGSEASPQSIARFQSMTSDYVDLINRFVADMEAYNARNTEYLRYCQLMLAALAVVGTV 196 Query: 167 FTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLY 226 + + V+ PL++L Q + GQ D + +E +++ FN M+ L + Sbjct: 197 ALIYMMMLLVLNPLDKLHQGIQLLAEGQLD-VSVPVESDDEFAQVSQGFNLMAQRLAEAR 255 Query: 227 RSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELN 286 +LE V KT L + + L +LY+ S LN Q + L V A+ + Sbjct: 256 ATLEERVRAKTASLQQKNKELALLYEISAFLNQPQSLESLCQGFLAKVMAAYRADGGAVR 315 Query: 287 VGENWRISE-----------------------------------------------GQPN 299 + ++ + Sbjct: 316 LTDHEQGIVYVVADQGMPEALLKEEHCMRVGDCLCGEVAEHSSSRVETLSVADNKSCSRE 375 Query: 300 PELPMQILPVTMQETVYGELHWQNS----HVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQ 355 + P+T+Q G + LL + L + + ++ Sbjct: 376 GYRVISAFPITVQGRSLGLFNLHYRQSVIMTPQQTRLLEVLGQNLAVAIENQRLFAKERE 435 Query: 356 LLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIP-EDNATAQSIMADFSQALNDAYR 414 L ++EER +A+ LHDS+AQ LS+L +Q +L++++ D + + ++Y Sbjct: 436 LAVLEERNLVAQGLHDSIAQGLSFLNLQAQMLRQALQLGDKELLDDTVGLIETGIKESYD 495 Query: 415 QLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQII 474 +RELL FR L + L A+ +L+ + QT K+ L T+ L + Q+ +L I+ Sbjct: 496 DVRELLNNFRSKLSE-SLMQAISTVLERFRRQTGIKVELRSEGLTVPLMPEQQLQILFIL 554 Query: 475 REAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIG---EPKEPEGHYGLNIMRER 531 +E + N KHA A+++ V + I+DNG+G + + H+GL+IM+ER Sbjct: 555 QEVLSNVRKHAQATQVVVHLK-DDGSAFELDIKDNGVGFAMATVAGKADTHFGLSIMKER 613 Query: 532 AERLGGTLTFSQPSGGGTLVSISFRSAEGE 561 A R G L S G GT V + A+ + Sbjct: 614 AARAGVALRISSQPGRGTSVHLHLPRAQRK 643 >UniRef50_Q5P3L3 Nitrate/nitrite TWO-component sensor NARX n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5P3L3_AZOSE Length = 648 Score = 364 bits (934), Expect = 6e-99, Method: Composition-based stats. Identities = 171/626 (27%), Positives = 262/626 (41%), Gaps = 66/626 (10%) Query: 2 IVKRPVSAS-----LARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRL 56 V+ ++ L AF + +S++ G ++ + + A+N AG LR ++R Sbjct: 18 RVRASLAGRATQLLLVLAFVAVAFISLVGIGASVAIVETVQDSGSAVNAAGGLRRLAHRA 77 Query: 57 GY-------DLQSGSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEM 109 D ++G + A F+ L L + V + Y ++ +W Sbjct: 78 ASVALAAALDGRTGHADVAAAIGAFEAELGHATLEKVLEREPDSVVASIYRGIHRDWYVN 137 Query: 110 NNRLSKGDLPWY------------QANINNYVNQIDLFVLALQHYAERKMLLVVAISLAG 157 G A+++ + QID V L+ E + + Sbjct: 138 LKPRLLGAPERASESPDVLFYENLLADVDAFTAQIDALVAVLERETETGLEQLRITLAVA 197 Query: 158 GIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQ 217 + ++ L IR +V PL +L + RI G F + +ELG + FN Sbjct: 198 LGMVMIVMIAALCVIRRRVFRPLTELHACAARIAGGDFRAHSR-YTGRDELGRVGSAFNA 256 Query: 218 MSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDN 277 M+ EL +YR LE VE+KT DL + R LE+LY L + + L+ + Sbjct: 257 MADELSTVYRDLEQRVEQKTADLTRSNRALELLYHVIARLYHAPASPETYVETLKDLEQV 316 Query: 278 EAAEYLELNVGE---------------------NWRISEGQPNPELPMQ----------I 306 + + V + P +P + Sbjct: 317 LGLKGSFVCVQPKHGGVATVLSTTMGDCPSRSGSEEECTHCPGRAMPWSYRREDGFDVFL 376 Query: 307 LPVTMQETVYGELHWQ----NSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEER 362 +P+ + +YG + + L+ +VS +G L + + + L L EER Sbjct: 377 VPLRDADHLYGMMRLALLPGERLRAWQHTLVEAVSRHMGIALGISHQSERERLLALQEER 436 Query: 363 ATIARELHDSLAQVLSYLRIQLTLLKRSI--PEDNATAQSIMADFSQALNDAYRQLRELL 420 + IARELHDSLAQ LSY++IQ +LL ++ PE A I+AD +N AYRQLRELL Sbjct: 437 SIIARELHDSLAQSLSYMKIQASLLSSALQRPERRDDASDILADMKGGINAAYRQLRELL 496 Query: 421 TTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLN 480 +TFRL ++ D L ++ ++ + L+ RL L+ ++H+L IIREA+ N Sbjct: 497 STFRLQMEG-DFARLLGSTVEEYAGRSGMPIDLEIRLGGRHLNPNQEIHVLHIIREALSN 555 Query: 481 AMKHANASEIAVSCVTAPDGNHTVYIRDNGIGI-GEPKEPEGHYGLNIMRERAERLGGTL 539 A +HA AS I V PDG V I D+G GI HYGL IM ERA LGG L Sbjct: 556 ATRHARASSIRVGLFGHPDG-VRVIIEDDGKGIRAAAATEPHHYGLAIMGERARGLGGVL 614 Query: 540 TFSQPSGGGTLVSISF-RSAEGEESQ 564 GGT V++ F A E S Sbjct: 615 EIVPRPDGGTRVAVRFDPVARHEASS 640 >UniRef50_C0DXM5 Sensor protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DXM5_EIKCO Length = 619 Score = 363 bits (933), Expect = 8e-99, Method: Composition-based stats. Identities = 130/596 (21%), Positives = 224/596 (37%), Gaps = 45/596 (7%) Query: 3 VKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYR--LGYDL 60 ++R +SA L A +L + ++ A AI G L Q +R + Sbjct: 23 LRRSLSARLLTAILLWAGGLLLFVSMTVVATWRLEERAGAIRQTGRLNDQVHRLTMAAVQ 82 Query: 61 QSGSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPW 120 G+P + L+S W+ E + + + +K D Sbjct: 83 NPGAPLPVQQVADTLKGLNSRQHAVCCTWW-DEPASHQLEQVRRDTEAFLQTAAKPDTAA 141 Query: 121 YQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPL 180 ID + L+ R + + + + + I + R +R V+ PL Sbjct: 142 LLEQAERLHTGIDTYARLLEEQNTRSIGWLRSGRIGLMLLILLSAAVSFRLLRQVVLRPL 201 Query: 181 NQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDL 240 L A +I HG+ + +N +E +A FN+M+ L ++Y LE V EKT L Sbjct: 202 GTLYQAMNQITHGRLGTRIAGSNSGDEFEAVADGFNRMADNLQEMYAHLEDKVAEKTAAL 261 Query: 241 HEAKRRLEVLYQCSQALNT----SQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEG 296 K E+LY + L+ S+++ +L++ + G G Sbjct: 262 SRQKSEWEMLYYVTSYLHKQSFGSEVEQAFLERMLRLSHSGGGGIFWLAEKGFTTACDIG 321 Query: 297 QPNPELP---------------------------MQILPVTMQETVYGELHWQNSHVSSS 329 + ++P+ G L V Sbjct: 322 LLEGLAERLPHTHTAEQESEAGNMVWMQGEEGALVALVPIYALGGFQGWLALSKPTVPLL 381 Query: 330 EP----LLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLT 385 L+ + + LG QQ ++EER+ IAR LHDSLAQ LS++ ++ Sbjct: 382 SAQNTGLMRLLCTQLGIARENAAMTLLKQQNAVLEERSRIARSLHDSLAQSLSFINMRFQ 441 Query: 386 LL-KRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQ 444 +L K + D+ + + + + Y +RELL FR Q + +R +++ + Sbjct: 442 MLSKNKLLPDDKSVRDNIEMIRDGIQYCYEDVRELLDHFRAKPQYGNFAETVRSVIERSR 501 Query: 445 NQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTV 504 Q + L L+++ Q L I++EA+ N KHA+A + V T+ Sbjct: 502 KQAGIPVVLHISGGDCLLNSEQQTQALFILQEALSNIRKHADAQQAEVLLENGDG--FTI 559 Query: 505 YIRDNGIGIGE----PKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFR 556 +RD+G G EP H GL++M ERAE++G ++ G GT V + Sbjct: 560 IVRDDGQGFDPESRAEAEPGQHIGLSVMHERAEKIGAEISIRSRPGSGTEVRLHIP 615 >UniRef50_Q46R21 GAF:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase, dimerisation and phosphoacceptor region n=41 Tax=Burkholderiales RepID=Q46R21_RALEJ Length = 675 Score = 363 bits (932), Expect = 1e-98, Method: Composition-based stats. Identities = 136/628 (21%), Positives = 236/628 (37%), Gaps = 75/628 (11%) Query: 4 KRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDL--- 60 + +S + +L+ + L AIN AGSLRM++ R+ +L Sbjct: 27 RHRLSTRIILLSLASLLVVLTMIAGTLWLSWKLEGAGAAINDAGSLRMRANRVAIELGLA 86 Query: 61 -QSGSPQLNAHRQLFQQALHSP-VLTNLNVWYVPEA--VKTRYAHLNANWL-EMNNRLSK 115 + +A Q L + ++P+ + + + +W E+ Sbjct: 87 NAGQAGARDAQIQALDGTLAQLRKGNPVRPLFLPDEPAIHEQLDRVAYDWQHELRPLAQA 146 Query: 116 GDLPWYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQ 175 G Y + +V + D V+ ++H + RK L+ + + Sbjct: 147 GSGVAYVQALPAFVAEADRLVMLIEHDSARKTDLLRLSQAGLAAIACVGTVAVIYLLYLW 206 Query: 176 VVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEE 235 ++ P+ +L +R+ +F L +E G L FN+M++EL LY+ L A V Sbjct: 207 IILPVLRLQDGLRRMAAREFSLR-LPVETRDEFGTLNAGFNRMAAELQDLYQDLAARVAS 265 Query: 236 KTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQ----------------------- 272 KT +L R LE LY + LN ++ R L+ Sbjct: 266 KTAELERQNRDLETLYDMAAFLNQARDAEAMARGFLERVMGQFDADGGSVRVMDAQHGKL 325 Query: 273 IVRDNEAAEYLELNVGENWRISEGQ-------------------------------PNPE 301 + + G + Sbjct: 326 HLLASAGLPAALAESGNCMAVDACHCGDATREGVVAIADLRRTTRRPLLPQPSPCTREGF 385 Query: 302 LPMQILPVTMQETVYGELHWQ----NSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLL 357 + + Q G S LL++++ LG L + +QL Sbjct: 386 TAIAAFRIESQRGAIGTFALHFHAPRELPPSDRQLLDTLAQHLGIALEHLRLSASARQLA 445 Query: 358 LMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDN-ATAQSIMADFSQALNDAYRQL 416 ++EER +A+ LHDS+AQ L++L +Q+ LL ++ D+ A A+ I+ + ++Y+ + Sbjct: 446 VVEERNLVAQGLHDSIAQGLNFLNLQVQLLGDAVDRDDLAEAREIVPMLRHGVEESYQDV 505 Query: 417 RELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALD--AQMQVHLLQII 474 RELL FR L +L A+ E ++ + Q + TL L + Q+ +L I+ Sbjct: 506 RELLNNFRSRLTPGELRPAVEETVERFRRQCRTEATLVIDDHGNRLPLQPEQQLQVLFIL 565 Query: 475 REAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEP---KEPEGHYGLNIMRER 531 +EA+ N KHA A+ + VS D + + D+G G ++ E H GLNIMRER Sbjct: 566 QEALSNVRKHAMAAHVTVSLCHGHD--FRLVVEDDGEGFDPAELGRDSEAHVGLNIMRER 623 Query: 532 AERLGGTLTFSQPSGGGTLVSISFRSAE 559 A RL L G G + + + Sbjct: 624 AARLHARLAIDARPGRGVRIELVLPHGD 651 >UniRef50_Q1ZGB4 Nitrate/nitrite sensor protein n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZGB4_9GAMM Length = 549 Score = 360 bits (925), Expect = 8e-98, Method: Composition-based stats. Identities = 155/546 (28%), Positives = 267/546 (48%), Gaps = 8/546 (1%) Query: 18 IVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQSGSPQLNAHRQLFQQA 77 I+L+S++ T S + D +I+ G ++ +++L Y LQ+ + + Sbjct: 2 ILLISVVHLLATFSTFDSHIADTRSISKLGEFKINTFKLLYALQNDPEKTPLLLAEIENT 61 Query: 78 LHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPWYQANINNYVNQIDLFVL 137 + L W+ ++ A L A W + ++ D+ + ++ I+ + Sbjct: 62 IRPAKLLKS-SWFNTHSLNENSALLLARWQSIEEAFAQNDVAGAHVKLLYFIKSINRVID 120 Query: 138 ALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDS 197 Q A++KM LV + + F ++ + P+NQL + I+ Q+D Sbjct: 121 QYQTLADQKMTLVHLAEFIAFMLLACTGLFLYFYSKNYISEPINQLAKNVESIKKHQYDV 180 Query: 198 PPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQAL 257 + NE G+LA+ M +E+ +L ++ V +KT++L A + + L SQ L Sbjct: 181 NFP--HYKNEFGILAQGMRDMYAEIQQLISQMKTQVHQKTQELENANQTIAFLLSISQQL 238 Query: 258 NTSQIDVHCFRHILQIV--RDNEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETV 315 + ++ L + + N +ELN G + G P+ + Sbjct: 239 GSVKLTSPVLYDALNALVKQANLKRVCIELNNGTFIQSKSGCSGINCRNSRFPIVINGKP 298 Query: 316 YGELHWQNS-HVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLA 374 YG L++ + L+ S S ++ R L + + Q++L+MEER IARELHDS+A Sbjct: 299 YGFLNYYSENESPEQRALIESFSVLIARALCQQENVQQTQKILIMEERNIIARELHDSIA 358 Query: 375 QVLSYLRIQLTLLKRSI-PEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLP 433 Q LS+L+IQ T+L + + ++ A + +A++DAY QLR LL+TFRLT ++ Sbjct: 359 QSLSFLKIQCTVLHQQVHQKEQQKALQSIHHIDEAISDAYAQLRSLLSTFRLTATHSNFK 418 Query: 434 SALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVS 493 A++ ++ TLQ QTSA++TL A Q+HLLQI+REA++NA+KHA+ I VS Sbjct: 419 EAVQMLISTLQKQTSAQITLKEFSTHFYSAANQQIHLLQIVREAIINAIKHADCQHIDVS 478 Query: 494 CVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSI 553 C+ PD N + I D+G GI E HYG++IM +R++ +G T + + GT V + Sbjct: 479 CLLTPDNNIWISIIDDGKGITNTSAIENHYGISIMEQRSDEIGATFSILPLA-SGTEVKL 537 Query: 554 SFRSAE 559 F + Sbjct: 538 IFPYKK 543 >UniRef50_C4K985 Histidine kinase n=1 Tax=Thauera sp. MZ1T RepID=C4K985_THASP Length = 637 Score = 343 bits (879), Expect = 2e-92, Method: Composition-based stats. Identities = 159/611 (26%), Positives = 260/611 (42%), Gaps = 58/611 (9%) Query: 1 MIVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDL 60 ++V+R + ++ A + L+ + + + + S +AI +A +LR + R+ + Sbjct: 8 LLVRRSIMLLVSVALVAMTLIGLAGMSASFVVVDRSRDSVQAIAVASTLRGHTQRIANLI 67 Query: 61 QSG--------SPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNR 112 S + A ++ L L E Y + A W Sbjct: 68 AIDALKGRIGVSERTRAAMADIERELQQAALRRFVDEAPGELFAATYRGVQAGWERSVRP 127 Query: 113 ----------LSKGDLPWYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIF 162 ++ A ++++V Q+D V L ER++ + I Sbjct: 128 RIEALAGPVPPDAREVETLLAGVDDFVGQVDSLVAVLGQENERRIDELRRILALAAAVTL 187 Query: 163 TLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSEL 222 +V + ++ ++ PL L+ A++RI G F +ELG + FN M+ EL Sbjct: 188 GVVLVVIVLLQRALLRPLGGLLDAARRIAGGDFGVRVR-YTGEDELGQVGSAFNLMADEL 246 Query: 223 HKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEY 282 + Y LE V EKT +L + R LE+LY L + + L+ + E Sbjct: 247 ARHYHLLELRVTEKTAELQRSNRSLELLYHAIARLYQAPSAPDAYEATLRDIDRVAGLEG 306 Query: 283 LELNVGE-----------------------------NWRISEGQPNPEL--PMQILPVTM 311 + + SEGQ L + P+ Sbjct: 307 SFVCIEPRPGAPAAVIASSMGPCPDRAERGEDACAACRAGSEGQALALLSPTLLRFPLRD 366 Query: 312 QETVYGELHWQ----NSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIAR 367 +E +G L L+ ++S +G L + + + L L EER+ IAR Sbjct: 367 REHHHGMLRLSLSDGARLEDWQRQLVEALSRHIGMALGAARRTEQERLLALQEERSVIAR 426 Query: 368 ELHDSLAQVLSYLRIQLTLLKRSI--PEDNATAQSIMADFSQALNDAYRQLRELLTTFRL 425 ELHDSLAQ LSY++IQ++LL+R++ P A A+ I+AD + ++ AYRQLRELL +FRL Sbjct: 427 ELHDSLAQALSYMKIQVSLLQRALADPARTAEAEPILADLREGISAAYRQLRELLVSFRL 486 Query: 426 TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHA 485 L ADL + + + + ++ L L L +VH+LQI+REA+ N ++HA Sbjct: 487 GL-SADLATLMEDAAREYGTRGGLEVELAVELGACQLSPNQEVHVLQIVREALSNMVRHA 545 Query: 486 NASEIAVSCVTAPDGNHTVYIRDNGIGI-GEPKEPEGHYGLNIMRERAERLGGTLTFSQP 544 +A V+ DG + +RD+G GI P + H+GL IMRERA +GG + Sbjct: 546 SARHAWVALRGGADGEVLLEVRDDGCGIGAPPADARNHHGLAIMRERARSMGGEIDIGPA 605 Query: 545 SGGGTLVSISF 555 GT V + F Sbjct: 606 LPSGTRVCVRF 616 >UniRef50_A8VTE1 Short-chain dehydrogenase/reductase SDR n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VTE1_9BACI Length = 633 Score = 313 bits (802), Expect = 1e-83, Method: Composition-based stats. Identities = 99/621 (15%), Positives = 216/621 (34%), Gaps = 81/621 (13%) Query: 7 VSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQS---------YRLG 57 + + A + L+S+L I++ S D A +I+G + ++ Y + Sbjct: 21 IYVIIVAAIVSVALISLLVIRISVTDTMSVQLDERAKSISGDVAARTGDLLLTNNIYAMQ 80 Query: 58 YDLQSGSPQLNAHRQLFQQALHSPVLTNLNVWYV--------PEAVKTRYAHLNANWLEM 109 + N +F + V+ + + Y HL Sbjct: 81 SLVNDTINNYNDLEYVFILNEDNEVIVDTYPNHQVSTDIINANRVASDEYNHLITF---- 136 Query: 110 NNRLSKGDLPWYQANINNYVNQIDLFVL--ALQHYAERKMLLVVAISLAGGIGIFTLVFF 167 + + + V +D V E + V + I + + Sbjct: 137 -----QSEAGVIRDAAAPVVKGMDATVRVGLRDDSLEEAISSVTLQIITFLILLIVVSLV 191 Query: 168 TLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYR 227 + ++ + P+++LV + R+ G+ + + +E+G L ++F+ M + L Sbjct: 192 VVMKLTRVITKPIDELVGLTNRVAKGEMTARITNYPS-DEIGDLTESFHDMLNTLEHTEA 250 Query: 228 SLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNV 287 E V + + R L +L S +T++ ++ + + + Sbjct: 251 EKENYVNQ----IITRNRELMLLNDLSDHPDTTKDFNAMMNRFVRDLVLELKLDSAAIEA 306 Query: 288 -------------------GENWRISEGQPNPELPMQIL---PVTMQETVYGELHWQNSH 325 N I+ + + + G++ + Sbjct: 307 TIIDQKQTFSYRAESCPEMNSNCLITCDCDCEKKQANVFNVFSIFAHHNEIGQIKICSPE 366 Query: 326 VSSS--EPLLNSVSSMLGRGLYFNQAQKHFQQ-------------LLLMEERATIARELH 370 + +L+S+++ LG + N+ ++ + +ER IARELH Sbjct: 367 QLDTYSHKILDSIANHLGTVIENNELTHEIKKKEEIRQMLLEKILTVQEDERKRIARELH 426 Query: 371 DSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLT-LQQ 429 D LS + + L +L+ + + + + + + +L R T L + Sbjct: 427 DQTGHALSSILLGLKMLED--AKTPEEVTKQIEALRKLTHQSIEDIHDLAWQLRPTILDK 484 Query: 430 ADLPSALREMLDTLQNQTSAKLTLDCRL-PTLALDAQMQVHLLQIIREAVLNAMKHANAS 488 L +A+ + Q + + + T+ L +M+ + +I++E++ N K+A A+ Sbjct: 485 FGLKTAIERYIQDFQQKLDIDYDVLIKGIDTIRLTPEMETAIFRIVQESLTNIFKYAEAN 544 Query: 489 EIAVSCVTAPDGNHTVYIRDNGIGIGEPK--EPEGH---YGLNIMRERAERLGGTLTFSQ 543 ++V + D +V I D+G+G K + GL+ M+ER LGGT Sbjct: 545 SVSVILLRNHD-MISVIIEDDGVGFDVEKMMNKDPSKFNLGLHGMQERTSLLGGTFEIES 603 Query: 544 PSGGGTLVSISFRSAEGEESQ 564 G GT + + + E + Sbjct: 604 EKGRGTAIMVKLPMSS-ERGE 623 >UniRef50_C0N1R0 Histidine kinase domain protein n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N1R0_9GAMM Length = 615 Score = 304 bits (780), Expect = 4e-81, Method: Composition-based stats. Identities = 118/594 (19%), Positives = 225/594 (37%), Gaps = 48/594 (8%) Query: 2 IVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQ 61 +R + A L I L +L + L A+ ++ +R +L Sbjct: 24 FSRRTLYAKLMLLLLCISLTVLLMQAGTIFLLDYIPSSQAALEKIAIQKVYWHRQIANLD 83 Query: 62 SGSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGD---- 117 S + Q +W + + A + E N Sbjct: 84 SDNGDKAGETLKAMQQQALDTSDPDVLWMLRQDSPDVVAAVRQVEREQQNFADIATLNLR 143 Query: 118 LPWYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVV 177 + D LAL +E K ++ + I +F+ + R +V Sbjct: 144 AAGQLRIADRVAKSYDELTLALHRDSETKQSIIGLLQAISLIFVFSCIVALSLGARRVLV 203 Query: 178 APLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEA--SVEE 235 L+ L+ ++ + +E +L + +Q+S+++ + E Sbjct: 204 ERLDNLLRFI-ALKPHD----AEPRHATDEFAVLEQCASQLSAKVQSYESEVTWAHRTSE 258 Query: 236 KTRDLHEAKRRL-EVLYQCSQALNTSQIDVHCFRHILQIVR----DNEAAEYLELNVGEN 290 TR L A+ + + S+ + + + + + + + + + E Sbjct: 259 HTRVLIRAQDFILRFIESVSEDVLSERTMLKMLYSLERSLGFSNTALIYTDDAAVISSER 318 Query: 291 WRISEGQPNPELPMQILPVTMQETVY-------------------------GELHWQNSH 325 S +P+ + ++ G L + Sbjct: 319 IIFSHQKPHNLTEKIFKELLQTGSITYDYTNPEGEKVSCMGMTFSGISNGVGVLLVEMDE 378 Query: 326 VS----SSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLR 381 S +L + +L F + ++L ++EERA IARELHDSLAQ LS+++ Sbjct: 379 GRFLEDSEVKVLEITTRLLSMVTKFQSHDEEGRRLAVLEERAAIARELHDSLAQSLSFMK 438 Query: 382 IQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLD 441 IQ+ L+ + A ++ + + L++AYR+LRELLTTFR+ + L A++ +D Sbjct: 439 IQVARLQ---AKSGAQQDDVVKELREGLDNAYRELRELLTTFRVHMDLRGLGYAIQATID 495 Query: 442 TLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGN 501 ++ ++ D RL L + H+L ++REA+ N ++H+ A + + + +G Sbjct: 496 EFSQRSQLVISFDNRLVNCRLTVNEEFHILHVVREALSNIVRHSGADNVTILMLLQKNGE 555 Query: 502 HTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 + I D+G+G + H+G IM+ERA+ LGG + GGT V +SF Sbjct: 556 VELTIDDDGVGFHPASDTYDHHGQAIMKERAQTLGGNVEVMARRFGGTRVRLSF 609 >UniRef50_Q1H473 Signal transduction histidine kinase, nitrate/nitrite-specific, NarQ n=1 Tax=Methylobacillus flagellatus KT RepID=Q1H473_METFK Length = 603 Score = 291 bits (745), Expect = 5e-77, Method: Composition-based stats. Identities = 130/591 (21%), Positives = 223/591 (37%), Gaps = 52/591 (8%) Query: 2 IVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQ 61 +++ + +L+++ +L L A MQ ++ Sbjct: 22 MLRHALYLRFITLLACTAILAVMMQAGSLFLLDYIPASQSA--------MQ--QVAQRKL 71 Query: 62 SGSPQLNAHRQLFQQ---ALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDL 118 + L+ Q Q +H+ + + + A L + E G+ Sbjct: 72 EWARFLDNPSQDRQPAPWNVHTLTGGENPHGWYAGHLSGKLAKLVEDVREQERTYHLGNA 131 Query: 119 PWYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVA 178 + ++ D + L+ AE K ++V + L G + + + IR ++ Sbjct: 132 ARDEWQPQRMLDSHDALLDGLRRDAEEKQAVLVMLQLMGLLLLLCCLGAMALLIRQVLID 191 Query: 179 PLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTR 238 + LV D +EL L + S+++ E ++ Sbjct: 192 RIAGLVALL-----PNQALSQQDRRDLDELSQLESLVQEFSAQMQGFKAETEWFNRTRSD 246 Query: 239 DLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLEL-------NVGENW 291 L R L+ A N S ++ + ++ + + + L G Sbjct: 247 LLRRMLRAHTFLHDLVVAFNDSVVNESSLKTMIYAMESSLDLRNVALHFMLDGGEAGGER 306 Query: 292 RISEGQPNPELP----------MQILPVTMQETVY------------GELHWQ----NSH 325 + LP + G L + Sbjct: 307 LLFSQHAPGALPEGVSRDLAVKRSAKFLVADGAECIAATFACPGDNSGTLLLEAKPGQEF 366 Query: 326 VSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLT 385 S L + +L L ++ ++L L EERA IARELHDSLAQ L+Y++IQ+ Sbjct: 367 HESDITLAEITAQLLSLVLGAQSREEQARRLALFEERAAIARELHDSLAQSLAYMKIQIA 426 Query: 386 LLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQN 445 L+ I + + L+ AYR+LRELL+TFR+ + L A++ +D + Sbjct: 427 RLQTQGSGGQHDTNEITTELREGLDTAYRELRELLSTFRMHMDVRGLGFAIQAAIDEFSH 486 Query: 446 QTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVY 505 ++S +TLD RL L + H+L +IREA+ N ++HA A + V+ P V Sbjct: 487 RSSVSITLDNRLVNCRLTVNEEFHILHVIREALSNIIRHAGAKNVVVALAYTPGSTVVVT 546 Query: 506 IRDNGIGIGEPK-EPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 I D+G+GI + GHYG +IMR+RA LGG +T S GGT V + F Sbjct: 547 IDDDGVGIPATATDEPGHYGQSIMRDRAYSLGGDITISARRQGGTRVRLIF 597 >UniRef50_Q2Y9N2 Periplasmic sensor signal transduction histidine kinase n=1 Tax=Nitrosospira multiformis ATCC 25196 RepID=Q2Y9N2_NITMU Length = 692 Score = 283 bits (724), Expect = 1e-74, Method: Composition-based stats. Identities = 93/477 (19%), Positives = 181/477 (37%), Gaps = 40/477 (8%) Query: 120 WYQANINNYVNQIDLFVLALQHYAERKMLLVVA-----ISLAGGIGIFTLVFFTL--RRI 172 Y+ + I+ F+L L K+ + I L + F L F TL Sbjct: 185 RYETEKIRIMAPINQFMLELDTRTRNKLSNLQLKFEQQILLILVVLCFALFFATLATFYT 244 Query: 173 RHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEAS 232 R ++ PL+ L I G + + + NE+ L FN M+ + L Sbjct: 245 RRNILLPLDYLRRQVSGIAQGNYSTR-CAISTRNEIAELGAGFNSMAEAIEHEIIKL--- 300 Query: 233 VEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNE--AAEYLELNVGEN 290 + L E + + Y + + +S ++ C +++ + +++ + Sbjct: 301 -RQVEESLRERLKEINCFYSIRRGMESSSLEEVCDTIATELIAAMQFPHLAGVKIEMDGK 359 Query: 291 WRISEGQPNPELPMQILPVTMQETVYGELHWQNS-----HVSSSEPLLNSVSSMLGRGLY 345 +S+ + +T+ + G + + + L++ + LGR L Sbjct: 360 ELVSDPYHGNHVHELQKQITVHGEIRGWIKLFYRGDRFFLLPEEQNLIDVIGDDLGRWLE 419 Query: 346 FNQAQKH-------------------FQQLLLMEERATIARELHDSLAQVLSYLRIQLTL 386 Q + + + E+R IARE+HD L Q+L+ L ++++L Sbjct: 420 HQQTEARVLVEQELRVRDAAIREFAAHLERMREEDRKYIAREIHDELGQLLAALHLEISL 479 Query: 387 LKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQ 446 L+ + + ++I + ++ + A + + + R + SAL ++ + Sbjct: 480 LRSAKDHGSERLETIRHNMAELVEKAGQSVHNVAEHLRPASLGLGIESALTKLTSEFKKH 539 Query: 447 TSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYI 506 T L + LD V + +I++E++ N +H+ A+ + + D V I Sbjct: 540 TGIYCDLRLPEEPVNLDEDQTVAIFRIVQESLTNVTRHSGANRVEIRLFREKD-EVIVEI 598 Query: 507 RDNGIGIGEPKEPEG-HYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEE 562 DNG G +G +GL MRERA L G + + G G LV +S E Sbjct: 599 CDNGRGFDPESAKKGKSFGLVGMRERAAALRGYIAITSGPGQGALVRVSIPLRRNEH 655 >UniRef50_B8GUD0 GAF sensor signal transduction histidine kinase n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GUD0_THISH Length = 550 Score = 282 bits (723), Expect = 2e-74, Method: Composition-based stats. Identities = 108/468 (23%), Positives = 191/468 (40%), Gaps = 58/468 (12%) Query: 150 VVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELG 209 ++ I + + I H ++ PL L +QR G + + E Sbjct: 67 LLGIQSLFLVAGLAVTLTLPVLIYHHLITPLFHLRHWAQRARGGNLAAR-IPIPSTGEFA 125 Query: 210 LLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRH 269 LA+ N ++ +L +L R + V +T L + LEVLY + ++NTS+ Sbjct: 126 ELAQDVNALTEQLQRLTREMRDEVSAQTERLEQKSHTLEVLYDVAASINTSRDLDDLLTR 185 Query: 270 ILQIVRDNEAAEYL--ELNVGENWRISEG----QPNPELPMQILPVT----MQETVYGEL 319 L ++ A+ L + +P+ + Q+LP+ + G+L Sbjct: 186 FLTSLKHALGAQAATARLVTPDGHMRLVANLGFEPDDQRCRQVLPLGKCMCGRVADGGDL 245 Query: 320 HWQNS---------------------------------------------HVSSSEPLLN 334 W+ + LL Sbjct: 246 SWKADIRQCGRVTSDCDTQEDEPAMITIPLQHRGKTLGVYSLFLHEWPEHLNEDMDNLLT 305 Query: 335 SVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPED 394 S+ LG + + + Q+L ++EER +A ELHDSLAQ L+ LR ++ L + + Sbjct: 306 SIGRHLGMAIEKARVDEEAQRLGIIEERTHLAHELHDSLAQTLATLRFRVRALDETAQDA 365 Query: 395 NATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLD 454 +A + + LN A +LR L++ FR ++ +A+ +M++TL+ +T + L Sbjct: 366 SAETRREIDQIKDVLNRANVELRALISHFRAPMEPQGFVAAVEKMVETLRRETGISVYLQ 425 Query: 455 CRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIG 514 L A+M+ +L+I++EA+ N KHA A + V +G V + D+G+G+ Sbjct: 426 KEWRPRKLPAEMETEVLRIVQEALCNIRKHAQAQHVRVLLRNDAEGECMVMVEDDGLGLQ 485 Query: 515 EPK--EPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEG 560 + P H GL++M ERA RL G GT +S++F + Sbjct: 486 PAEQGAPGEHIGLSVMTERAARLDADFRIESEPGEGTRISLAFHYPKP 533 >UniRef50_C0N6H4 Putative uncharacterized protein n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N6H4_9GAMM Length = 570 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 90/438 (20%), Positives = 165/438 (37%), Gaps = 26/438 (5%) Query: 139 LQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSP 198 +Q +ER + + ++L G+ IF V L + PL +L+ A E G Sbjct: 136 MQEISERWLDIRSILAL--GLVIFVFVSIFLYWGVDWFLRPLQRLLQALSGFERGDLHLR 193 Query: 199 PLDTNLPNELGLLAKTFNQMSSELHKLY---RSLEASVEEKTRDLHEAKRR--LEVLYQC 253 + L E+ ++ TFN+M L + L V + + + Sbjct: 194 LPNFTLA-EMNQISHTFNRMGQALELSTAENQRLAMLVRQSGDAILSLDHAGNITFCNST 252 Query: 254 SQALNTSQIDVHCFRHILQIVRDNEAAEYLEL----NVGENWRISEGQPNP---ELPMQI 306 ++ L SQ + + + N + + EN +P+ +L + Sbjct: 253 AERLFASQTPILKGESLAHLGFANHYKQISHILENCESTENMETVLVRPDGSQVDLLLST 312 Query: 307 LPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIA 366 +P++ E L ++ + + L + ER +A Sbjct: 313 VPLSDNEDRVIGLICTLRDITELKQ-----AEAARNQLRETRLLAKHMDEAQEAERRHLA 367 Query: 367 RELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRL- 425 RELHD L Q L+ ++ L++ + + Y + ++T R Sbjct: 368 RELHDELGQCLTAIKTDAVLIRNRTETTEPRVFNSAQAIIDTASHIYDVVHNMITRLRPS 427 Query: 426 TLQQADLPSALREMLDTLQNQ-TSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKH 484 L L L + + + Q++ T+ LD L+ M + + ++++EA+ NA++H Sbjct: 428 PLDDLGLVPTLEQCIASWQSRETTINFQLDVNGTLNNLNEIMNMTVFRVVQEAITNAVRH 487 Query: 485 ANASEIAVSCVTAP---DGNHTVYIRDNGIGIGE-PKEPEGHYGLNIMRERAERLGGTLT 540 A+ASEI V D + I+DNG G+ + +GL MRERA+ LGG Sbjct: 488 ADASEIKVKVSAEQGSEDDKLIIDIQDNGKGMVVKDFHSDVDFGLLGMRERAQSLGGKFE 547 Query: 541 FSQPSGGGTLVSISFRSA 558 + G G + I+ Sbjct: 548 LNSEPGAGVRILITIPLG 565 >UniRef50_Q67S65 Two-component sensor histidine kinase n=1 Tax=Symbiobacterium thermophilum RepID=Q67S65_SYMTH Length = 633 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 77/411 (18%), Positives = 154/411 (37%), Gaps = 61/411 (14%) Query: 211 LAKTFNQMSSELHKLYRSLEAS---VEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCF 267 L++ F++M+ L L + + + R L E L+ +A++T+ Sbjct: 223 LSQEFHRMNRLLDTLEDKVADRTDQLAQTVRALERRLAESEALHAVDEAISTAIHPDEVL 282 Query: 268 RHILQ--------------IVRDNEAAEYLELNVGENWRISEG----------------- 296 + I + ++ + + +++ GE G Sbjct: 283 QVIARESVRVTGGSSALVTLLTPDGSRQFVRATHGEGMEAYVGLELPMEGNLTSLVLQTG 342 Query: 297 -------------------QPNPELPMQILPVTMQETVYGELHWQNSHVSSSE----PLL 333 + + P+ + G L + + LL Sbjct: 343 KPHFSREPDRDPRLNQDLVRAGGWRDVIQAPIRTKNRTLGVLVVASRQPGRFDEQHLRLL 402 Query: 334 NSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPE 393 +++ GR + ++ +++ ++EER +ARELHDS+ QVL L + L + Sbjct: 403 TLLANQAGRLIESSELHAKAREVAVLEERNRLARELHDSVTQVLFGLTLNLESAVGLLDR 462 Query: 394 DNATAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLT 452 A++++ + +A ++R L+ R LQ+ L AL ++ + +T ++ Sbjct: 463 KPEKARTLLTRSREMAGEALAEMRSLIFELRPAALQEKGLAMALSNHINLFRRRTGVEVN 522 Query: 453 LDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIG 512 L L ++ L ++ +EA+ N KHA A + V P+ + + D+G+G Sbjct: 523 LTLSGDE-RLSPDVEFALYRVAQEALNNVAKHARARHVRVKLDLRPEEAL-LEVCDDGVG 580 Query: 513 IGEPKEPEG-HYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEE 562 G +G+ MRER L G+L G GT + +A G + Sbjct: 581 FDPTASARGASFGMIGMRERVSELKGSLEVISAPGQGTCIRARIPAASGGD 631 >UniRef50_C6XAG1 Histidine kinase n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6XAG1_METSD Length = 608 Score = 262 bits (670), Expect = 3e-68, Method: Composition-based stats. Identities = 128/584 (21%), Positives = 236/584 (40%), Gaps = 55/584 (9%) Query: 2 IVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINI--AGSLRMQSYRLGYD 59 +++ + L F ++LL I+ +L L + A+ A Q+ R Sbjct: 16 LLRHTLYLRLVVLLFCVLLLIIMMQVGSLFLLDYIPGNQSAMRQLYAQKFHWQALRAEVT 75 Query: 60 LQSGSPQLNAHRQLFQQALHSPVLTNLNVWY---VPEAVKTRYAHLNAN-WLEMNNRLSK 115 + +L AH L+ W+ + + + L A+ + Sbjct: 76 ARPTGSRLPAH------GLNPDAGVIEFSWFRQQLGSRLPPVISRLEADTAHLVAQYPQP 129 Query: 116 GDLPWYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQ 175 + ++ + D LQ E K ++ + L G+ + + +F + +H Sbjct: 130 EHSAGWLQAVDQVLRDYDSVAEELQRDVEVKQSVIGLLQLVSGLLLVSCLFALALKAKHL 189 Query: 176 VVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEE 235 ++ + L R+ +F D +E L +T ++++ L E + Sbjct: 190 LIDRIGHLT----RLLPEEFQLED-DQPYADEFARLEQTIYRIAARLEGFRAESEWFNQT 244 Query: 236 KTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGE------ 289 ++ L R L+Q +NT + R +L ++ + + L E Sbjct: 245 RSERLRRVLRAQGFLHQLVGMINTPDLSEALLRKVLYMLESALDVQNVALLFAEKSGGET 304 Query: 290 --NWRISEGQPNPELPMQILPVTMQE--------------------------TVYGELHW 321 S+ P P + ++ + G L Sbjct: 305 VERTLFSQHLPRAIPPGLLAELSTSQAANYQLPASDGQEGASGVVAAFTSPWETLGMLTV 364 Query: 322 QNS----HVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVL 377 + + L+ + +L + ++ ++ L++ERA IARELHDSLAQ L Sbjct: 365 EAEATHVFDETDIELVEMTAQLLSMVMGTQNREQEGRRAALLDERAAIARELHDSLAQSL 424 Query: 378 SYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALR 437 S+++IQ+ L+ +A + I+ + Q L++AYR+LRELL+TFR+ + L A++ Sbjct: 425 SFMKIQIFRLQSHPQTQHADLRGIVNELRQGLDNAYRELRELLSTFRVHMDVRGLRFAIQ 484 Query: 438 EMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTA 497 +D +++ + LD RL L + H+L +IREA+ N ++H+ AS + V+ V Sbjct: 485 SAIDEFMQRSNLSIALDNRLVNCRLTVNEEFHILHVIREALSNIVRHSGASTVTVALVYQ 544 Query: 498 PDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTF 541 +G+ V I D+GIG GHYG +IM+ERA LGG L Sbjct: 545 SNGSVIVTIDDDGIGYASKPGEPGHYGHSIMQERAYSLGGELAV 588 >UniRef50_D1UN54 PAS/PAC sensor signal transduction histidine kinase n=1 Tax=Burkholderia sp. CCGE1001 RepID=D1UN54_9BURK Length = 610 Score = 261 bits (668), Expect = 5e-68, Method: Composition-based stats. Identities = 87/449 (19%), Positives = 152/449 (33%), Gaps = 44/449 (9%) Query: 152 AISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLL 211 AI + TL TL + V +P+N+L RI G D +ELG L Sbjct: 158 AILATIAAVVATLYAATLVLLNGMVRSPINRLEEMVDRIAAGNLDVR-CAVESDDELGRL 216 Query: 212 AKTFNQMSSELHKLYRSLEAS-------VEEKTRDLHEAKR-----------RLEVLYQC 253 A N M+ L + L S VE + R + Y Sbjct: 217 AARVNAMADRLRESTARLYESEQKYRSIVENALEGIFRLHRNGWLEEANPAMARLLGYDS 276 Query: 254 SQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQE 313 ++AL + R + + + + + L Sbjct: 277 ARALVAAGTREPDKRPFTPQQVEGLFERLDGSGEIAELELPLARADGTVIWVQLSARGVA 336 Query: 314 TVYGELHWQNSHVSSSEPLLNSV--------------------SSMLGRGLYFNQAQKHF 353 G + + + ++ L + Sbjct: 337 DSSGAIVRLDGFFADVTARRQALDHLRRHRDELQAEVAERKRTEQELRASREELRELSWH 396 Query: 354 QQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAY 413 +++ EER IA E+HD L Q+L+ L+I ++LL+ + + AQ + + Sbjct: 397 LEVIREEERKRIALEVHDELGQLLTALKIDISLLQMRLAGNPE-AQGKTDAMRELIERTM 455 Query: 414 RQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQI 473 +R + R L SAL + + + T+ L+ + +I Sbjct: 456 WMVRNVANHLRPAALNFGLVSALEWLAQDFNARYYIQCTVVTHGDEPVLEDARATAIFRI 515 Query: 474 IREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIG---EPKEPEGHYGLNIMRE 530 +E++ N +HA AS + ++ + +G + IRD+G G G YGL M E Sbjct: 516 AQESLTNVARHARASHVVLTL-RSGEGFIDLEIRDDGCGFDRDAVSARQRGSYGLLGMAE 574 Query: 531 RAERLGGTLTFSQPSGGGTLVSISFRSAE 559 RA +GG LT + + GT+V++ + Sbjct: 575 RARLIGGALTITSGASTGTVVALRIPLPD 603 >UniRef50_A7BTT3 Sensory transduction histidine kinase n=1 Tax=Beggiatoa sp. PS RepID=A7BTT3_9GAMM Length = 732 Score = 260 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 98/526 (18%), Positives = 182/526 (34%), Gaps = 33/526 (6%) Query: 63 GSPQLNAHRQLFQQALH-SPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPWY 121 G +A + Q H S + L+ +P Y L+ ++ L + Y Sbjct: 185 GRNLDDAQIERLTQLTHLSVTVQRLDNPNLPPDFAKAYLALSNQ-QQVVQILDGKHIAGY 243 Query: 122 QANINNYVNQIDLFVLALQHY-AERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPL 180 + Y L +A+ ++ + + A+S I V L V+A L Sbjct: 244 ILTKDIYQQPAALLRVAMPRKIYQQGLTSLYALSGLVLIFAVVCVSVILWLFERLVLARL 303 Query: 181 NQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLY---RSLEASVEEKT 237 L +I + + +EL LA N M LH R EAS+ E Sbjct: 304 ATLSHEVMQINVTD-NLSIVMVEGGDELAHLATAINNMLKALHASNEQVRHSEASLAEAQ 362 Query: 238 RDLHEAKRRLEVLYQ---CSQALN--------TSQIDVHCFRHILQIVRDNEAAEYLELN 286 R H +++ CS + + F + + ++ + L+ Sbjct: 363 RIAHLGNWEWDIINNRLNCSDEIYRIFGLKSQSITPTAELFLNYVHPDDQHKVSLALQKI 422 Query: 287 VGENWRISEGQPNPELPMQILPVTMQETVY----GELHWQNSHVSSSEPLLNSVSSMLGR 342 E+ + + +I + Q + G++ + L + + L R Sbjct: 423 ANEDQPCNLEHRIVQQNGEIHFIHTQGEIIKDNTGKIVRIIGTLQDISELKQAQAETL-R 481 Query: 343 GLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNAT----- 397 L N+ H + EE +A ELHD Q ++ ++ + Sbjct: 482 LLEENRFLIHRSMAIKEEELKRLAYELHDEFGQCITAIQADAETIVDLAARKQQQPIILN 541 Query: 398 -AQSIMADFSQALNDAYRQLRELLTTFRLT-LQQADLPSALREMLDTLQNQTS-AKLTLD 454 + + AY + L+ R + L + L ALR+++ T Q + + Sbjct: 542 KINLSANAILEVSSHAYDVVHSLMQQLRPSGLDELGLVEALRDLVSTWQARHKKTRCIFR 601 Query: 455 CRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAP-DGNHTVYIRDNGIGI 513 L + + + ++++E + N K+A AS +++ + ++DNG G+ Sbjct: 602 ATGELHHLGETINIQVYRVVQECLTNIAKYAQASHVSIKLTVDSVKKILILCVQDNGQGM 661 Query: 514 GEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAE 559 + G GL MRERA L G L G G +++ AE Sbjct: 662 NLTQYKRG-LGLIGMRERATALEGNLQLESALGDGVQITLIIPIAE 706 >UniRef50_B2AKD3 Putative multi-sensor signal transduction histidine kinase n=1 Tax=Cupriavidus taiwanensis RepID=B2AKD3_CUPTR Length = 608 Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats. Identities = 98/445 (22%), Positives = 157/445 (35%), Gaps = 43/445 (9%) Query: 151 VAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGL 210 AI + L + ++ V +P+N L +I G D+ + +ELG Sbjct: 157 QAIFAIMAALLAVLYAASFLLLKRMVRSPVNGLEKMVDKISGGDLDAR-CEVKSGDELGR 215 Query: 211 LAKTFNQMSSELHKLYRSL-----------EASVE-----EKTRDLHEAKRRLEVL--YQ 252 LA N M+ +L L E +VE ++ +L EA + L Y Sbjct: 216 LAVRINYMADQLRTSTLLLQKSERKYRSIVENAVEGIFLLDQAGNLAEANPAMAQLLGYD 275 Query: 253 CSQALNTSQIDV----------------HCFRHILQIVRDNEAAEYLELNVGENWRISEG 296 + L S +I L+ + G Sbjct: 276 NACDLTVSAESDGRPKSPFSLSLTATLFKTLNVDGEIRGLELQLSRLDGTPIWVQLNARG 335 Query: 297 QPNPELPMQILP-----VTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQK 351 E ++ L VT ++ +L Q + L Q Sbjct: 336 LMGSEGSLRYLEGLLTDVTARKHALEDLQLQRDRLELEVSERKWTELELLASRERLQQLH 395 Query: 352 HFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALND 411 Q+ + EER IA E+HD L Q+L+ L++ L+LL +P + Q + + + Sbjct: 396 AHQEAIREEERKCIAMEIHDELGQLLTALKMDLSLLSMQLPTGSGVIQKA-EEMRELIEQ 454 Query: 412 AYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLL 471 R +R +++ R T L SAL + T P L + Sbjct: 455 TIRIVRNVVSHLRPTALNYGLASALEWLAADFSRHTKIPCRFQSTHPEPNLPDPRATAIF 514 Query: 472 QIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEG-HYGLNIMRE 530 +I++E++ N +HA AS++ V+ D V IRDNG G G YGL+ M E Sbjct: 515 RIVQESLTNVARHAKASQVDVTLANT-DAGIEVIIRDNGQGFNVVSARAGYSYGLHGMAE 573 Query: 531 RAERLGGTLTFSQPSGGGTLVSISF 555 RA +G L GTL+ + Sbjct: 574 RARLIGAQLEVHSKPDRGTLIRLRL 598 >UniRef50_A3DEX1 Histidine kinase n=5 Tax=Clostridium RepID=A3DEX1_CLOTH Length = 392 Score = 257 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 79/368 (21%), Positives = 143/368 (38%), Gaps = 14/368 (3%) Query: 203 NLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQAL-NTSQ 261 N EL +A+ L K L+ E + + + LY+ + L + S+ Sbjct: 25 NSKAELFDIAENARNECVRLEKELEELKRRTSEIIKSVETLE---VALYESKKRLMHVSR 81 Query: 262 IDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETVYGELHW 321 L+ +N +EL + + EL M++ L Sbjct: 82 NYDKYSEEELREAYENADNIRVELAIKREREQYYIKRRNELEMRLKEAYKTVEKADNLIS 141 Query: 322 QNSH-VSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYL 380 Q +S L +VS + + + EER +ARE+HD AQ +S + Sbjct: 142 QIGISLSYLTGDLENVSLQIED-MKQRRLLGIRIIKAQEEERQRVAREIHDGPAQSMSNI 200 Query: 381 RIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALREM 439 ++ + +R + D A+ + + D R +R+++ R +L L L+ Sbjct: 201 VLKAEICERLVDSDPEKAKDELRTLKSVVRDTLRDVRKIIYDLRPMSLDDLGLIPTLQRY 260 Query: 440 LDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPD 499 ++T + ++ K+T R L + + + ++++EAV N KHA A ++ ++ + Sbjct: 261 IETCREESGIKITFKTRGTCEQLKPVVSLTVFRLVQEAVNNIKKHARADKVTINLEFL-E 319 Query: 500 GNHTVYIRDNGIGIGEPKEPEG------HYGLNIMRERAERLGGTLTFSQPSGGGTLVSI 553 +YI DNG+G +GL MRER E L G G GT ++I Sbjct: 320 KELKLYIADNGVGFDFDSLKSNEEDINKGFGLISMRERVELLDGKFEIDSAVGKGTRLNI 379 Query: 554 SFRSAEGE 561 + E Sbjct: 380 TVPLLPEE 387 >UniRef50_B7AAT7 Histidine kinase n=1 Tax=Thermus aquaticus Y51MC23 RepID=B7AAT7_THEAQ Length = 564 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 89/433 (20%), Positives = 153/433 (35%), Gaps = 48/433 (11%) Query: 150 VVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELG 209 VV L G + L +++ PL+ +V + R++ GQ + + ELG Sbjct: 153 VVWAGLFGLLWAVGLGGALGYLFLTRLLEPLSLMVQEASRLKEGQ-PARFPEPPH--ELG 209 Query: 210 LLAKTFNQMSSELHKLYRSLEASV----EEKTRDLHEAKRR------LEVLYQCSQALNT 259 L + N M +E+ + R L E DL R E+ + C + Sbjct: 210 ALGRALNAMGAEVRRRERDLRLLNRLLSEMHALDLATLSERVLGLLVRELGFTCGDLWLS 269 Query: 260 SQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETVYGEL 319 ++ + + L + +G P P L + + V Sbjct: 270 GRVVHCEACRDRCPLGGVASLAQEALASRQVVVRPQGVAVPVPPHGALVLHGRPEV---- 325 Query: 320 HWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQL-------------LLMEERATIA 366 + L +++ L L + + + EERA IA Sbjct: 326 -----EEAWLRAFLEALAGPLATALENARLYEALAEKEAQRARLLKAWLKAQEEERARIA 380 Query: 367 RELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLT 426 RELHD + Q L+ L + L L + + ++R L R + Sbjct: 381 RELHDEVGQALTGLILGLEGLPG----------DRVEALKELARHTLTEVRRLALDLRPS 430 Query: 427 -LQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHA 485 L L +ALR + +T ++ L L L +++ + ++++EA+ N +H+ Sbjct: 431 VLDHLGLEAALRRYVREFAERTGVEVDLSLHLT-RPLPQELETVVYRVVQEALTNVARHS 489 Query: 486 NASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPS 545 + + + V G V++ D G G G GL MRER E LGG L+ Sbjct: 490 GSPQAS-VGVVEVLGEVRVFVEDEGRGFDPEAVDPGRQGLLGMRERVELLGGRLSVESAP 548 Query: 546 GGGTLVSISFRSA 558 G GT V + Sbjct: 549 GQGTRVQVRLPIG 561 >UniRef50_Q7NE94 Glr3986 protein n=1 Tax=Gloeobacter violaceus RepID=Q7NE94_GLOVI Length = 655 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 66/308 (21%), Positives = 122/308 (39%), Gaps = 6/308 (1%) Query: 253 CSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQ 312 + D ++ + R + V +R M I+P+ + Sbjct: 347 ACGKPLSEARDCEVYQQVYLHRRCLVLEDVPNNPVSVPFREWAAARGGIQTMLIVPLVLA 406 Query: 313 ETVYGELHWQNS----HVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARE 368 + V G ++ +S L +++ + + + ++ ++EER +ARE Sbjct: 407 DRVIGSFSVCSTEKRVFLSQEIELAQALAHQATLAVQLTRLAEQGRRSAVLEERNRMARE 466 Query: 369 LHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQ 428 LHD+L Q L+ + +QL + D + + + + R + R L Sbjct: 467 LHDTLMQGLAGIVVQLQAATDAGVADPLDGRDHIDRARTLARRSLAEARRSVRALRPQLL 526 Query: 429 QAD-LPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANA 487 + L AL ++L + + R AL A+ + LL+I EA+ NA++HA A Sbjct: 527 EQGDLGQALADLLQQSIYDNHTEARCEVRGTPFALPAEAENQLLRIAGEALSNALRHARA 586 Query: 488 SEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGG 547 + + V + + D+G G + +GL MRERAER+G L G Sbjct: 587 NRVHVELDYER-PQVRLVVADDGRGFDPDRVGTDRFGLVGMRERAERIGADLRLESVPGQ 645 Query: 548 GTLVSISF 555 GT V+++ Sbjct: 646 GTRVAVTL 653 >UniRef50_D1C6S2 Histidine kinase n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C6S2_SPHTD Length = 456 Score = 254 bits (650), Expect = 6e-66, Method: Composition-based stats. Identities = 107/429 (24%), Positives = 180/429 (41%), Gaps = 32/429 (7%) Query: 144 ERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTN 203 R++ L+ I + + + F L RHQVV P + A+ G+ + PLD Sbjct: 31 ARRLRLLKWI----TVVVPGVFIFVLESTRHQVVEPFLREHGAT-----GRLPAIPLDIG 81 Query: 204 LPNELGLLAKTFNQMSSELHKLYRSLEASVEEKT-RDLHEAKRRLEVLYQCSQALNTSQI 262 +GLLA L + L V E R L L L + + S Sbjct: 82 NLI-VGLLAFG-------LAFGFSHLVFGVIEHMQRRLLRRNAELAALNAVAASAGASLR 133 Query: 263 DVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQ-----ILPVTMQETVYG 317 + ++ A+ + +++ E G + +P+ + +G Sbjct: 134 VGDIVAQAEETLQRLFPADSVRIDLTEPVVAGTGDVPDDGTSLAAGEMRVPLQARGHRHG 193 Query: 318 ELHW---QNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLA 374 L + + + LL ++ LG + + + + ++EER IARE+HD +A Sbjct: 194 TLRLTRSRGEFSRADQRLLRAIGDTLGMAIENARLHQQVHEAAVVEERGRIAREMHDGVA 253 Query: 375 QVLSYLRIQLTLLKRSI-PEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQ-ADL 432 Q+L+Y+ ++L + + TA++ + QA AY +RE + RL L Sbjct: 254 QMLAYVLVKLGTVDGLLAAGAADTARAEIETMRQAAESAYTDVREQILGLRLVTDGAPGL 313 Query: 433 PSALREMLDTLQNQTSAKLTLDC-RLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIA 491 + LR LD QT +TL+ LP AL ++ +++I +EA+ N KHA+A + Sbjct: 314 AAWLRTYLDDFAEQTDLDVTLEIDDLPPGALPRASELQVIRIAQEALSNVRKHADARSVR 373 Query: 492 VSCVTAPDGNHTVYIRDNGIGIGE--PKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGT 549 V C +G+ + + D+G G H+GL MRERAE LGGTL G GT Sbjct: 374 VRCTVE-EGDLILTVADDGRGFDPSSANRQGHHFGLLTMRERAESLGGTLQIESQPGSGT 432 Query: 550 LVSISFRSA 558 +++ Sbjct: 433 RITLRAPLP 441 >UniRef50_B8FFK0 PAS/PAC sensor signal transduction histidine kinase n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FFK0_DESAA Length = 832 Score = 254 bits (648), Expect = 8e-66, Method: Composition-based stats. Identities = 73/386 (18%), Positives = 135/386 (34%), Gaps = 15/386 (3%) Query: 183 LVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHE 242 L +R E G F + E + NQ +L + + LE V +T ++ Sbjct: 440 LSAIGERDEEGNFVRSLAVSVDVTEQKKAQEALNQAQEKLSQHSQELERQVFRRTEEISS 499 Query: 243 AKRRLEVLYQC----SQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQP 298 + L + + ++ F + VR E + + +R + + Sbjct: 500 ILKYTPNLVHIKDADGRYIMVNRRYEEIFGISNEDVRGRTQHESMPREYADAFREVDHRV 559 Query: 299 NPE--LPMQILPVTMQETVYGELHWQNSHVSSSEPL-----LNSVSSMLGRGLYFNQAQK 351 E V + + L + + +++ + + + + Sbjct: 560 LSEKKPVRSEYVVRVDGEDHSYLSVKFPIYDEQGRIHAIGGISTDVTEIKKAQEALRRLS 619 Query: 352 HFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALND 411 + + ER IARELHD L Q+L+ LR+ K+ + + +A Q + + ++ Sbjct: 620 NRMIISQEAERQAIARELHDELGQILTVLRMDAVWFKKRLKDSDAATQERASAMCELIDK 679 Query: 412 AYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHL 470 +R + R L L AL + +T + L + Sbjct: 680 TIEDVRGIAVRLRPGVLDDLGLVDALEWYTSDFERRTGITCIFEHD-NIPNLGNAISTAA 738 Query: 471 LQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPK-EPEGHYGLNIMR 529 +I +EA+ N ++HA+ VS + T+ I DNG+G E G+ MR Sbjct: 739 YRIAQEALTNVVRHASTDRADVSLSFDQE-EFTLIISDNGVGYDGGMVEESEGLGIAGMR 797 Query: 530 ERAERLGGTLTFSQPSGGGTLVSISF 555 ERA GGTL G+ + Sbjct: 798 ERAMLAGGTLEVEAGEDAGSRIIFRI 823 >UniRef50_Q1H0K4 Multi-sensor signal transduction histidine kinase n=2 Tax=Methylophilaceae RepID=Q1H0K4_METFK Length = 573 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 87/447 (19%), Positives = 170/447 (38%), Gaps = 29/447 (6%) Query: 135 FVLALQHYAERKMLLVVAISLAGG-IGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHG 193 V+A + L G F ++ + + + + P + ++ A +E G Sbjct: 132 LVVASDAAGAIRESWASFQHLLWIEAGFFVVLNALIYWMLGRWLRPADDILRAISEVERG 191 Query: 194 QFDSPPLDTNLPNELGLLAKTFNQMSSELHKLY---RSLEASVEEKTRDLHEAK------ 244 D N+P E +A+ FN M L + R L V++ + Sbjct: 192 NLDVRLPKFNVP-EFSRIAQNFNLMGESLRERTEENRRLALIVQQSADAIMIHDPDGNIS 250 Query: 245 -----RRLEVLYQCSQAL--NTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQ 297 + Y + + + + + + + + R++ Sbjct: 251 FWNPAAQRLFGYAPEDIIGKSAALLMPPGHEGEQERSSAASMSANGLVEHYDTQRVARDG 310 Query: 298 PNPELPMQILPVTM--QETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQ 355 ++ + I P+ + GE+ ++ R L N+ H Q Sbjct: 311 KLLDVSLSIAPLMDPKSGELIGEICSMRDITER------KLAEETARKLEENRQLTHLIQ 364 Query: 356 LLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQ 415 + +ER ++ARELHD L Q ++ ++ + ++ + +S A N Y Sbjct: 365 RHIEDERRSLARELHDELGQYVTAIKTFAVAIANKAKQEMPSIESSAQTIVSAANHIYDG 424 Query: 416 LRELLTTFRL-TLQQADLPSALREMLDTLQNQ-TSAKLTLDCRLPTLALDAQMQVHLLQI 473 + ++ R +L L ALR+ + Q Q ++ L+ + L + ++L +I Sbjct: 425 MHNIIRHLRPGSLDNLGLSEALRDAVAGWQAQNSNVTFNLELQGKLDLLGESLNINLYRI 484 Query: 474 IREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGE-PKEPEGHYGLNIMRERA 532 ++E+V NA++HA A I + +GN T+ I+DNGIG+ + H+GL MRER Sbjct: 485 VQESVTNALRHAQADRIDIRLSRDENGNLTLLIKDNGIGMNMCNVDQNRHFGLLGMRERV 544 Query: 533 ERLGGTLTFSQPSGGGTLVSISFRSAE 559 + L G G GT ++++ Sbjct: 545 QALYGNFAIDSQPGQGTAITVTIPERP 571 >UniRef50_Q1AZP1 Periplasmic sensor signal transduction histidine kinase n=2 Tax=Actinobacteria (class) RepID=Q1AZP1_RUBXD Length = 508 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 61/224 (27%), Positives = 103/224 (45%), Gaps = 6/224 (2%) Query: 344 LYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMA 403 L + + ++ ++EER +A E+HD+LAQ + + L ++ D A + + Sbjct: 280 LENLRLVERARRAGVLEERQRLAHEIHDTLAQGFTSIVTNLEAAGGALQRDRAALRRHLE 339 Query: 404 DFSQALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLAL 462 ++ + R L+ R L++A LP ALR + + + + AL Sbjct: 340 QALAVARESLSEARRLVWALRPEPLEEAPLPEALRRLAARWSSSSGIPARVLVTGEPRAL 399 Query: 463 DAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEG- 521 A +V LL++ +EA+ N KHA A +A++ D + +RD+G+G G Sbjct: 400 PADPEVTLLRVAQEALANVRKHARAGRVAITLSYIGD-RVALDVRDDGVGFDPAAPSPGD 458 Query: 522 ---HYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEE 562 +GL MRER R GGTL+ G GT++S +A E Sbjct: 459 DGSGFGLRSMRERVGRAGGTLSVESAPGEGTVLSAEVPAAGAAE 502 >UniRef50_D1C419 Histidine kinase n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C419_SPHTD Length = 437 Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats. Identities = 57/272 (20%), Positives = 103/272 (37%), Gaps = 15/272 (5%) Query: 299 NPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLL 358 L + V + L++ + + + Q + Sbjct: 159 EGALLGAVFSVIFTIISIFFFAAITRQSQERKRLIDELMATRAALAERER------QAGV 212 Query: 359 MEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRE 418 +EER +ARE+HD+LAQ + + + L + IP + + + D+ R Sbjct: 213 IEERQRLAREIHDTLAQGFTSIVMHLEAAEPHIPAEATALRRHVEQARATARDSLNDARR 272 Query: 419 LLTTFRLTLQQAD--LPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIRE 476 L+ R + L AL + + T + + L ++V L +I +E Sbjct: 273 LVWALRPEQLEQGGSLADALARVAERWSEDTGITAHVTVDGTPVPLPPDVEVTLFRITQE 332 Query: 477 AVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPE------GHYGLNIMRE 530 A+ N KHA A + ++ D + ++D+G+G G +GL MRE Sbjct: 333 ALANVRKHAQAGRVDITLSYLDD-EVLLDVQDDGVGFDRATVSATPGSVNGGFGLTGMRE 391 Query: 531 RAERLGGTLTFSQPSGGGTLVSISFRSAEGEE 562 R LGG+L G GT ++++ A+ E Sbjct: 392 RLRLLGGSLMIESAPGEGTSITVALPLADRVE 423 >UniRef50_B2TAX2 PAS/PAC sensor signal transduction histidine kinase n=1 Tax=Burkholderia phytofirmans PsJN RepID=B2TAX2_BURPP Length = 748 Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats. Identities = 69/387 (17%), Positives = 136/387 (35%), Gaps = 16/387 (4%) Query: 179 PLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSE-----LHKLYRSLEASV 233 + + GQ + +EL + F ++ + + V Sbjct: 372 RWGHMRMVPEFAADGQVATVLAICRDIDELKRSEQLFRTLTENAPEMIVRYDRNCRYSYV 431 Query: 234 EEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRI 293 + ++ + + ++ ++ ++ L+ V + ++L +N Sbjct: 432 NPRFEQVNGMRAADAIDKAPAELSDSVMPELRMITATLEQVMASGIGAKVDLTSEKN--- 488 Query: 294 SEGQPNPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHF 353 G+P + + G L E L L Q Sbjct: 489 --GKPVGWHVSAVPEHGANGDIRGALTIWTDITERMEVELR-----LRESYALLQELTSL 541 Query: 354 QQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAY 413 ++ EER IARE+HD L Q L+ LR+ ++ ++ +D+ D +D Sbjct: 542 RETAREEERKRIAREMHDELGQQLTALRLGVSAMRIEFAQDDPALAGRFRDLLALADDTM 601 Query: 414 RQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQI 473 + +R ++ + R A + +AL + L L LD + L +I Sbjct: 602 QVVRNVVASLRPAAIDAGIVAALEWLAAEFSRDGRVACHLRIPDDNLVLDEARAIALFRI 661 Query: 474 IREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAE 533 ++EA+ N +HA A+++ +S + I D+G G +GL MRER Sbjct: 662 VQEALTNVARHAAATQVTISLEQTGRCWV-LEISDDGCGFDSMAARMKSFGLVGMRERVL 720 Query: 534 RLGGTLTFSQPSGGGTLVSISFRSAEG 560 LGG ++ G GT +++ + Sbjct: 721 MLGGEISVCSAPGSGTSITVCIPVDDA 747 >UniRef50_D1CB59 GAF sensor signal transduction histidine kinase n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CB59_THET1 Length = 464 Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats. Identities = 82/426 (19%), Positives = 151/426 (35%), Gaps = 21/426 (4%) Query: 147 MLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPN 206 + L A +G+ L F V +++L + ++ Sbjct: 34 LSLSNYAVWAVDVGVVILTFIAALIFSEVVFGIVSRLQAGLAQQNKELLALHQAGLDIAG 93 Query: 207 ELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHC 266 EL + S L K+ V + L V + + + Sbjct: 94 EL--------NLESVLQKIVDQARELVGARYGALLTINESGLVDTYITSGFSPGGVKASE 145 Query: 267 FRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETVYGELHWQN--- 323 D++ V + +S + +P+ + V G L Sbjct: 146 LGAFTSYTSDHKPIRISGKEVVAHI-LSLPSDQAAHSLLTVPILSGDKVLGNLFVAGKES 204 Query: 324 --SHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLR 381 E L ++ + + + + L + EER IARE+HDSLAQVL+Y+ Sbjct: 205 AREFTEEDEETLARFATQAALAIENARLHEQVKALAIAEERERIAREMHDSLAQVLTYVT 264 Query: 382 IQLTLLKRSIPEDN-ATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQ-ADLPSALREM 439 + + + A ++ A AY +RE + R + ++ +RE Sbjct: 265 TKGHATQMLLERGELDKASKNLSQLVDAARSAYSDVREQILALRTSQERNRGFIDVIREY 324 Query: 440 LDTLQNQTSAKLTLDC-RLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAP 498 Q+Q+ + LD + + L + +++I++EA+ N KH+ A++ ++ Sbjct: 325 AQKWQDQSGIPVELDIQQGLNIRLTPTTDLQVIRIVQEALSNIRKHSGATQAWITI-YKR 383 Query: 499 DGNHTVYIRDNGIGIGEPKEPEG---HYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 D V I+DNG G +GL +MRERAE +G L GT + + Sbjct: 384 DDRLVVTIKDNGAGFDPSSLTRSDFPRFGLAMMRERAESVGAELNIDTGPRQGTEIRLRI 443 Query: 556 RSAEGE 561 ++ E Sbjct: 444 PLSKSE 449 >UniRef50_Q025Z0 Histidine kinase n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q025Z0_SOLUE Length = 969 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 71/247 (28%), Positives = 116/247 (46%), Gaps = 10/247 (4%) Query: 321 WQNSHVSSSEPLLNSVS--SMLGRGLYFNQAQKHFQQ---LLLMEERATIARELHDSLAQ 375 ++ ++ +MLG Q + + L++EERA +ARE+HD+LAQ Sbjct: 724 FEMRPQFWETAWFRALVGLAMLGAAWAIYQLRLRQIRSRFALVLEERARLAREIHDTLAQ 783 Query: 376 VLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFR-LTLQQADLPS 434 + QL + S+P + A+ + + + + R + R L+ DL + Sbjct: 784 GFVGISSQLDAVAMSMPAEATPARGYLDLARRMARHSLTEARRSVMDLRASALEGQDLAA 843 Query: 435 ALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSC 494 A++ L ++ K+++D P L +M+ HLL+I++EAV N +KHA A I V Sbjct: 844 AIQSGTLLLTAGSNVKVSVDVSGPVTELPEEMEQHLLRIVQEAVTNVLKHAAARNIWVKI 903 Query: 495 VTAPDGNHTVYIRDNGIGIGEP---KEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLV 551 P + I D+G G + GH+G+ MRERAERLGG L + G GT V Sbjct: 904 RVEP-RKLYLAILDDGRGFDQHDVFASRGGHFGVIGMRERAERLGGELRLASHPGEGTQV 962 Query: 552 SISFRSA 558 ++ Sbjct: 963 EVTVPLP 969 >UniRef50_B8D0J3 Histidine kinase n=2 Tax=Clostridia RepID=B8D0J3_HALOH Length = 391 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 73/384 (19%), Positives = 151/384 (39%), Gaps = 14/384 (3%) Query: 184 VTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEE---KTRDL 240 + S+ +E + + E+ +A++ + + + + + E K L Sbjct: 5 IDPSRSLEKILEKTVEVLAESKKEIFTIAESIRREYDNIKRELDLINEEINEVVAKVDKL 64 Query: 241 HEAKRRLEV-LYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPN 299 E R + L + S+ + + ++ Q D + E + + Sbjct: 65 QEVNRIARIRLMEVSRDF--EKHSEYDIKYAYQQAEDTSVQIAVLREKEEQLK----KRR 118 Query: 300 PELPMQILPVTMQETVYGELHWQNSHVSS-SEPLLNSVSSMLGRGLYFNQAQKHFQQLLL 358 EL +++ + + + V L+++S Q Q Sbjct: 119 AELENRLINLKRNIEKAENMVSRVGVVHDYLLGELSNLSEQFDDLRQKQQLAIKIIQ-AQ 177 Query: 359 MEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRE 418 +ER +ARE+HD AQ ++ L ++ L ++ + +D A++ + D + + + +++R+ Sbjct: 178 EDERKRVAREIHDGPAQSIANLVFRVELAQKLMDKDLKKARNELEDVKELVRLSMQEVRK 237 Query: 419 LLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREA 477 ++ R +L L LR ++ QT + + P L ++ + ++I+E Sbjct: 238 IIYDLRPMSLDDLGLIPTLRRYINKFNEQTKIIIDFNILGPKRRLPNTYEITIFRLIQEG 297 Query: 478 VLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGG 537 + N KH+ AS V+ P+ + I D+GIG + +GL MRER E LGG Sbjct: 298 LNNIYKHSKASTGTVTLEYTPE-QINILISDDGIGFKPEEVGANKFGLVSMRERCELLGG 356 Query: 538 TLTFSQPSGGGTLVSISFRSAEGE 561 L GT + I+ + Sbjct: 357 KLDLFSEKNKGTKIKITLPIKQRG 380 >UniRef50_Q3M1D8 Serine/threonine protein kinase and signal transduction histidine kinase with GAF and PAS/PAC sensor n=9 Tax=Bacteria RepID=Q3M1D8_ANAVT Length = 2361 Score = 245 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 80/354 (22%), Positives = 139/354 (39%), Gaps = 13/354 (3%) Query: 206 NELGLLAKTFNQMSSELHKLYRSLEASVEEK-TRDLHEAKRRLEVLYQCSQALNTSQIDV 264 NE G + ++ + E R L A ++ + Sbjct: 2015 NESGEPIRALGVVTDINDRKQAEAALQASEAELRALFSAIPDPLFVFSAEGRFLEIMVLE 2074 Query: 265 HCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETVYGELHWQNS 324 + Q + +L E QIL V + G W ++ Sbjct: 2075 RNL--LWQPFEEMIGKTMHQLGREEADEFLGYIQQVLRTQQILTVEYGAFLNGREMWFSA 2132 Query: 325 HVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQL 384 ++ + + AQK ++ ++EER +ARE+HD+LAQ + + Q+ Sbjct: 2133 RIAPISH------DQVIWLVRDITAQKQAEEASILEERNRMAREIHDTLAQAFTGILAQV 2186 Query: 385 TLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQAD-LPSALREMLDTL 443 K+ + +D AQ+ + + + R + R L + L SAL ++ + Sbjct: 2187 GAAKQVLTDDVEAAQAHLDLIKELARTGLTEARRSVIALRPQLLEEGSLQSALHRLVAQI 2246 Query: 444 Q-NQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNH 502 + T L + +L +++ +LL+I +EA+ NA+++ANA EI V V D Sbjct: 2247 RAAATDTTLYYEIEGAVYSLPTEVENNLLRIGQEALTNAIRYANADEIRVELVYDRD-QF 2305 Query: 503 TVYIRDNGIGIGEPK-EPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 + +RDNG G G +GL M ERAER+G LT G GT + ++ Sbjct: 2306 CLRVRDNGQGFGVGSISASEGFGLLGMSERAERIGAQLTIRSQPGQGTEIIVTV 2359 >UniRef50_B2JVQ4 Integral membrane sensor signal transduction histidine kinase n=1 Tax=Burkholderia phymatum STM815 RepID=B2JVQ4_BURP8 Length = 605 Score = 244 bits (624), Expect = 6e-63, Method: Composition-based stats. Identities = 140/597 (23%), Positives = 225/597 (37%), Gaps = 66/597 (11%) Query: 4 KRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQSYRLGYDLQSG 63 + P+ A + IV L + A + S + + + M+ R LQ+ Sbjct: 11 RYPLYAKVCLLLACIVALITVLYLGAFMQTRGSEGFRQTL-FSLDEAMRLDRKAASLQTA 69 Query: 64 SPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPWYQA 123 SP + +L S L W A A G A Sbjct: 70 SPDTARALRELADSLVSNDTL-LTDWRQRGAPTPEIGGALAAANASAAPEHTGKPDAKLA 128 Query: 124 NINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAP---L 180 + + A Q +L ++ + IF +V R V P L Sbjct: 129 ALGALRAHV-----AYQREVHAAVLGLLQACTV-CLLIFGVVSLAWGARRTLVARPRAAL 182 Query: 181 NQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDL 240 LV + G +E+ L K +++ L + Sbjct: 183 QALVETGLSVPQG-----------RDEIERLLKLQAELAVRLRTEQDESVRLKRIVEDYI 231 Query: 241 HEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNP 300 A + LE+L+ L + +LQ + A+ + L V E+ Sbjct: 232 TFADQSLELLHHICAQLAEEEPSGRTLEALLQRLVGVLRAQRIALVVTESTAQLLDIDPV 291 Query: 301 E------------------------------------LPMQILPVTMQETVYGELHWQNS 324 P+ PV + YG L + Sbjct: 292 VAPNGDVPAIVRSRVTNELMTLAGTHTFPPLDNGEVPPPVLAAPVRVPLASYGVLIAEGE 351 Query: 325 HVSSSEP----LLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYL 380 + E L+ +++S+L + +++ L EER IARELHDSLAQ LSY+ Sbjct: 352 PETRFELRHLYLIETIASVLAHAISNLSRDVRDRRMALFEERNAIARELHDSLAQSLSYM 411 Query: 381 RIQLTLLKRSIPEDNAT--AQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALRE 438 +IQL L+ +P + + I + ++ AYRQLRELLTTFR + L S L E Sbjct: 412 KIQLARLQAVLPPELSQSDIAEIARGIREGIDSAYRQLRELLTTFRSPMHAHGLASTLEE 471 Query: 439 MLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAP 498 + + +++ ++++D R+P + L ++H+ QI+REA+ N ++HA A+ V + + Sbjct: 472 LAEEFGSRSEVQISIDNRVPRMRLSVNEEMHVAQIVREALTNVLRHARATTAQVQLM-SD 530 Query: 499 DGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 TV I D+G GI + E HYGL+IMRERA LGG L G+ V ++F Sbjct: 531 GRTMTVSIDDDGRGINRTEGDEHHYGLSIMRERARSLGGRLEVKPAE-RGSRVVLTF 586 >UniRef50_D1CE67 Multi-sensor signal transduction histidine kinase n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CE67_THET1 Length = 748 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 56/210 (26%), Positives = 86/210 (40%), Gaps = 7/210 (3%) Query: 356 LLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQ 415 EER IAR+LHD AQ L L ++ L+ + + AQ + D + Sbjct: 537 AAQEEERRRIARDLHDDTAQALIALSRRIDSLREDLGDLPEAAQRKIEDLKALTDQTLAS 596 Query: 416 LRELLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQII 474 +R R + L L AL ++ + L + L ++++ L +I Sbjct: 597 VRRFSRDLRPSILDDLGLVPALEWLVSENAKRYKITTRLKIQGEERRLQPEVELALFRIA 656 Query: 475 REAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPK-----EPEGHYGLNIMR 529 +EA+ N KH+ A+ AV D + + DNGIG P G G+ M Sbjct: 657 QEALNNTAKHSQATGAAVELTF-GDTWCRLTVSDNGIGFQTPPNISELADRGRMGVMGMY 715 Query: 530 ERAERLGGTLTFSQPSGGGTLVSISFRSAE 559 ERA LGG L G GT ++++ E Sbjct: 716 ERANLLGGNLYVRTAPGQGTRITVTVPLIE 745 >UniRef50_C6CGT0 PAS/PAC sensor signal transduction histidine kinase n=11 Tax=Enterobacteriaceae RepID=C6CGT0_DICZE Length = 546 Score = 244 bits (623), Expect = 8e-63, Method: Composition-based stats. Identities = 68/320 (21%), Positives = 132/320 (41%), Gaps = 8/320 (2%) Query: 238 RDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYL-ELNVGENWRISEG 296 L + E L+ + L + C + ILQ+V+ + E + E+ ++ Sbjct: 230 AVLAHLRFTAEQLH--GRRLTDLLPNARCAQRILQLVQMVVDTQSSVEGELEEDIGMTTT 287 Query: 297 QPNPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQL 356 + ++ +P Q G+L + + + + + + +++ Sbjct: 288 RHRVIHHIRCVPEFDQR---GKLISILTVGRDITAIRYAEKKLEDSHMQL-RLLARQREI 343 Query: 357 LLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQL 416 EER IARE+HD L Q L+ +R+ L+L++ DN + + + + + + Sbjct: 344 SREEERKHIAREIHDELGQHLTSMRMSLSLMRMQFARDNPHMLTQLQNLMALSDKTIQVV 403 Query: 417 RELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIRE 476 R + T R + L AL + D Q L P + L+ + ++++E Sbjct: 404 RHVATRLRPNVLDMGLTPALEWLRDDFIRQYRCPCLLHAPEPEVVLNDECATAAFRVVQE 463 Query: 477 AVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLG 536 ++ N +HA A+++ +S +G + + DNG G +GL M+ER LG Sbjct: 464 SLTNIARHAEATQVVISLE-NREGLIVLSVHDNGKGFDAQTRKPNAFGLMSMKERGRMLG 522 Query: 537 GTLTFSQPSGGGTLVSISFR 556 G + G GTLV ++F Sbjct: 523 GEVVIESQPGAGTLVRLTFP 542 >UniRef50_C4XMF3 Two-component sensor histidine kinase n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XMF3_DESMR Length = 704 Score = 244 bits (622), Expect = 8e-63, Method: Composition-based stats. Identities = 88/447 (19%), Positives = 155/447 (34%), Gaps = 31/447 (6%) Query: 135 FVLALQHYAERKMLLVVAISLAGGIGI-FTLVFFTLRRIRHQVVAPLNQLVTASQRIEHG 193 +++ ++ L+ + I L + +++ + L ++ G Sbjct: 257 LAVSMPRSIHQQGRLLERAMVGSLTTIGIMFGLAMLYFVERFILSRVTGLGQEIAQLGQG 316 Query: 194 QFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQC 253 +E+ L++ N M EL + + E Q Sbjct: 317 S-RKRVTPLAGNDEVSALSRAVNLMLDELDAARAHYVMATRAAKVGVWEL--------QP 367 Query: 254 SQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENW--RISEGQPNPELPMQILPVTM 311 L + + A +L+ E+ + GQ + P + + Sbjct: 368 DAGLIVVDPVIAGLLGYDSPGQPEALALWLDRLAPEDRDSLVRPGQHLFDKPTFERELRV 427 Query: 312 QETVYGELHWQ------NSHVSSSEPLLNSVSSM--LGRGLYFNQAQKHFQQLLLMEERA 363 G L + S L+ + + L + +A ERA Sbjct: 428 VAAQGGVLCFLCRGQFVPGADGSPSRLVATAVDITELKQAAESIRALSGRLMQAQESERA 487 Query: 364 TIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTF 423 +IAR+LHD++AQ LS L+I L + + +A + + S L +REL Sbjct: 488 SIARDLHDNVAQDLSSLKIAYETLLDGLADVDAALRQRLEAASGLLARTIASVRELAYGL 547 Query: 424 RLT-LQQADLPSALREMLDTLQNQTSAKLTLD-CRLPTLALDAQMQVHLLQIIREAVLNA 481 R L+ L ALR + + + ++ L L +DA + ++L +I +EA+ N Sbjct: 548 RPPNLEHLGLDQALRRLSQEMGQASGLAVSYAGVGLEGLDVDADVAINLFRIAQEALANV 607 Query: 482 MKHANASEIAVSCVTAPDGNHTVYIRDNGIGIG--------EPKEPEGHYGLNIMRERAE 533 KHA AS + + + + + IRD+G G + GL MRERA Sbjct: 608 RKHAGASRVEMRLIESY-PKLILRIRDDGRGFDAVREHGDCPGEASRPCMGLINMRERAG 666 Query: 534 RLGGTLTFSQPSGGGTLVSISFRSAEG 560 GG+L G GT V A Sbjct: 667 LFGGSLRVISSPGHGTTVVAEVPYAGE 693 >UniRef50_B6JD37 Signal transduction histidine kinase containing PAS/PAC sensor domain n=1 Tax=Oligotropha carboxidovorans OM5 RepID=B6JD37_OLICO Length = 358 Score = 244 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 68/313 (21%), Positives = 125/313 (39%), Gaps = 12/313 (3%) Query: 260 SQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQI---LPVTMQ-ETV 315 ++ + + V L+ + S P+ E P+ + + Sbjct: 50 GKMPSEIWPPEIAEVYLRTDRAVLKSGRRRRYEESRRGPDGEPRWFETIKSPIRDESGHI 109 Query: 316 YGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQ 375 G + S + L +A H+ Q + EERA IARELHD L Q Sbjct: 110 IGTVGI-----SRDISERKAAEDELVASRTQLRALSHYLQTVREEERAHIARELHDELGQ 164 Query: 376 VLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPS 434 L+ +++ L L+ + DN + + + + L+ + + R L + L S Sbjct: 165 TLTAMKMDLVWLRERLSADNGALKPRVERLVGLADRSVTDLQRIASDLRPLMLDELGLVS 224 Query: 435 ALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSC 494 A+ + DT+ Q++ + L L ++ +I++EA+ N ++H+ A + ++ Sbjct: 225 AVHWLTDTVAGQSNLNINLSFDREDLTYGPEVSTAAFRIVQEALTNIVRHSGARHVTIT- 283 Query: 495 VTAPDGNHTVYIRDNGIGIGEPKEPEG-HYGLNIMRERAERLGGTLTFSQPSGGGTLVSI 553 + + I D+G G+ H+GL M ERA LGG++ GGGT V Sbjct: 284 ACHAEDELHIEIVDDGCGLPPTAASPRLHHGLLGMHERANMLGGSVAVESAPGGGTRVRA 343 Query: 554 SFRSAEGEESQLM 566 S + +Q + Sbjct: 344 SLPLKQRPAAQEV 356 >UniRef50_Q1IXN3 Periplasmic sensor signal transduction histidine kinase n=2 Tax=Deinococcus RepID=Q1IXN3_DEIGD Length = 564 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 78/367 (21%), Positives = 140/367 (38%), Gaps = 29/367 (7%) Query: 222 LHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAE 281 L +++ L ++ D A+R + L + + + + R A Sbjct: 197 LGRVWAWLAYALLSAPPDEGGARREVAALRRAAGRVALGDDLQATLADLAGQARAASTAW 256 Query: 282 YLELNVGENWRISEGQPN----------------------PELPMQILPVTMQETVYGEL 319 + L + + P+ + + LPV G L Sbjct: 257 AVALTAPDGTLRARSGPDHPTLHGPGASPPAGGADVRYAASGVTLATLPVVAGGADGGTL 316 Query: 320 HWQNSHV----SSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQ 375 + L S++ G L+ + + + +ERA +ARELHDS+AQ Sbjct: 317 RALYAPGTQPGPEELAFLLSIADHAGTALHAAELIRRASERAEEQERARLARELHDSVAQ 376 Query: 376 VLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPS 434 L + + + ++ D ++ + + +++ LL + R L++ L + Sbjct: 377 ALYGITLGAKTARATLGRDPEKTRASLDYTIRLAEGGVSEMKALLFSLRPDALEEGGLVA 436 Query: 435 ALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSC 494 AL + L+ + + D L Q ++ +EA+ N +KHA AS++ +S Sbjct: 437 ALMQNAHALEARHGLTVHADL-GREPRLSPTAQAAAYRVAQEALHNVVKHARASQVWLSV 495 Query: 495 VTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSIS 554 G T+ +RD+G G P G G MRERA+ GGTLT G GT V++ Sbjct: 496 -REEAGRVTLEVRDDGRGFDPAALPGGTLGQRSMRERAQGTGGTLTVHSSPGAGTTVTLI 554 Query: 555 FRSAEGE 561 +A E Sbjct: 555 LPAAGEE 561 >UniRef50_B4WPC3 GAF domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WPC3_9SYNE Length = 2009 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 73/384 (19%), Positives = 137/384 (35%), Gaps = 35/384 (9%) Query: 211 LAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHI 270 L + Q+ ++ L +E T L + A N ++ F Sbjct: 1618 LGQILTQIVEQIGADDTHL-FLYDEATDTLRSHIAVQDDQVYLGHAPNDPELFYQPFPTD 1676 Query: 271 LQIVRDNEAAEYLELNVGENWR----------ISEGQPNPELPMQILPVTMQETVYGELH 320 + A L E R + + + + + G + Sbjct: 1677 ITDAWQMMTASREPLIFDEIRRDVTDFYWPTTLEWHEARGHQSAACICLKVGSQPIGLIG 1736 Query: 321 WQNS----HVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLM----EERATIARELHDS 372 + + + ++++ ++ Q + L EER +ARE+HD+ Sbjct: 1737 FAFRSIAILTTEQIEFIQALTNQATLSIHLTQLADQSKAAALSVALTEERNRLAREIHDT 1796 Query: 373 LAQVLSYLRIQLTLLKRSI---------PEDN-----ATAQSIMADFSQALNDAYRQLRE 418 LAQ + + +QL + ++ D Q+ + + R Sbjct: 1797 LAQAFTGVSLQLEAARSALTKAAASVAAERDPLPPAFDQTQTFILRARDLSRQGLSEARR 1856 Query: 419 LLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREA 477 + R L+ LP+ALR++L+ + + T L +Q+HLL+I +EA Sbjct: 1857 SVRALRSQALETDTLPTALRKVLNQINHDTHLDTQFYLEGTPEPLPDDIQLHLLRISQEA 1916 Query: 478 VLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGG 537 + NA++HA A++I ++ P + I D+GIG + +GL +RER R G Sbjct: 1917 ITNALRHAQATQIDLTLAFEP-REIQLRIVDDGIGFTPSSQAGSGFGLVGIRERVARFHG 1975 Query: 538 TLTFSQPSGGGTLVSISFRSAEGE 561 T S G GT + ++ Sbjct: 1976 TFQLSSSPGVGTTIEVTVPFPTAP 1999 >UniRef50_Q3SJC2 Multi-sensor Signal Transduction Histidine Kinase n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SJC2_THIDA Length = 1168 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 59/308 (19%), Positives = 126/308 (40%), Gaps = 5/308 (1%) Query: 257 LNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETVY 316 L + + + + + A+ +W + L T + Sbjct: 862 LADAPRFLDLIFDEDRPLFEQSMAQSARGLYPWSWEGRIRAGSLGETWVSLRATPTLLLD 921 Query: 317 GELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQV 376 G + W ++ ++ LN + L + + ++ + +ER IARE+HD L Q+ Sbjct: 922 GGVVWDGIILNVTQTKLNELE--LRQSRESLRLLTAHREAVREDERKHIAREIHDELGQL 979 Query: 377 LSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSAL 436 L+ LR++++ + + DN + +N + +R++ T+ R L +A+ Sbjct: 980 LTALRMEVSAVGMAFGRDNPELDEKVRSMKTVINQTIQTVRQVATSLRPAALDLGLETAI 1039 Query: 437 REMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVT 496 + + + + + +ALD L +I++E + N +HA A+ +++ T Sbjct: 1040 DWLASEFCKRNAVECAVAIPGE-IALDEVRATALFRILQETLTNIARHAGATSVSIKLKT 1098 Query: 497 APDGNHTVYIRDNGIGIGEPKEPEGH-YGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 + + + DNG G + +G +GL + ER LGGT+T G G +++ Sbjct: 1099 TGE-EICLKVTDNGRGFDPEEAKQGGSFGLKGIAERVLILGGTMTIKSAPGQGAELAVCI 1157 Query: 556 RSAEGEES 563 +A+ Sbjct: 1158 PAADPASG 1165 >UniRef50_D1C9Z9 GAF sensor signal transduction histidine kinase n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C9Z9_SPHTD Length = 883 Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats. Identities = 65/300 (21%), Positives = 119/300 (39%), Gaps = 10/300 (3%) Query: 273 IVRDNEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETVYGELHWQN-----SHVS 327 ++ E ++ + +P+ + + G + Sbjct: 583 VLGQREPFSCCQVPQMVGDDPALHAALGGACALAVPLAAKGRILGVAFVFSETPCDGFTP 642 Query: 328 SSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLL 387 L+ V+ G + + L + EER +A+E+HD+LAQ L+ + + L L Sbjct: 643 DRIQLIRGVADSAGLAVENARLYAQSHGLAIAEERGRLAQEIHDTLAQGLTAISLHLDLA 702 Query: 388 KRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLT-LQQADLPSALREMLDTLQNQ 446 +P A + + + R + R L Q LP ALR ++ T Sbjct: 703 DAYLPHKPEQAADKVRRALELTRQNLEEARRSVLDLRAARLHQMSLPDALRRLVLTFTGD 762 Query: 447 TSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYI 506 T + L A++++ L +I EA+ N +HA A+ + V+ TA +G ++ + Sbjct: 763 TGVEADFVVEGLVGRLSARVEMGLYRIAEEALNNVRRHATANHVRVAL-TASEGQVSLTV 821 Query: 507 RDNGIGIGEPK---EPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEES 563 D+G+G + + G +GL +RERA L GTL S G GT + ++ + Sbjct: 822 EDDGVGFAQEAIERDNGGGFGLMSIRERARLLRGTLDLSSAPGEGTRLVVTIPAEGRARE 881 >UniRef50_B2VGC1 HrpX protein (Hrp cluster) n=6 Tax=Enterobacteriaceae RepID=B2VGC1_ERWT9 Length = 494 Score = 242 bits (617), Expect = 4e-62, Method: Composition-based stats. Identities = 66/330 (20%), Positives = 126/330 (38%), Gaps = 8/330 (2%) Query: 238 RDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQ 297 L E L + D+ C +HI ++V + +L S+ + Sbjct: 170 AALRHLNVSAEQL--RGRRFRELLGDLACVQHIERLVSE---VVQSQLEAEGELVESDNK 224 Query: 298 PNPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLL 357 + + + + G L V ++ L + +++ Sbjct: 225 TSEGTIVNHIRCVPEFDRNGVL-ISVMCVGRDITAIHYAEKKLEDSHMRLRLLARQREVS 283 Query: 358 LMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLR 417 EER IARE+HD L Q L+ LR+ +++L+ +DN + + + +R Sbjct: 284 REEERKRIAREIHDELGQHLTSLRMGISMLRIQFSKDNPLLHERVVHLMGLTDKTIQVVR 343 Query: 418 ELLTTFRLTLQQADLPSALREMLDTLQNQT-SAKLTLDCRLPTLALDAQMQVHLLQIIRE 476 + T R + L AL + D ++ L + L + ++ +E Sbjct: 344 NVATRLRPNVLDMGLTPALEWLRDEFISRHIGCCCRLITPEKEVRLGDEQATAAFRVAQE 403 Query: 477 AVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLG 536 ++ N +HA ASE+ + V G+ + +RDNG G + +GL MRER LG Sbjct: 404 SLTNISRHAQASEVIILLVRHA-GSVVLTVRDNGRGFDCQNGKDNAFGLMSMRERGRMLG 462 Query: 537 GTLTFSQPSGGGTLVSISFRSAEGEESQLM 566 G + GT +S++ + +++ + Sbjct: 463 GRVDIESKPSIGTCISLTIPIVQDADNKKV 492 >UniRef50_C6D0G7 GAF sensor signal transduction histidine kinase n=29 Tax=Bacillales RepID=C6D0G7_PAESJ Length = 559 Score = 241 bits (616), Expect = 5e-62, Method: Composition-based stats. Identities = 75/425 (17%), Positives = 151/425 (35%), Gaps = 33/425 (7%) Query: 140 QHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPP 199 +H++E ++ L+ A++L G I + + + + A L ++ ++ Sbjct: 146 EHFSEEELALLQAVALQIGTAINRIRLYQTQERNAMLYAKLGDVIQRINGVQDVNQLPIK 205 Query: 200 LDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNT 259 + +E G + +Y + L LY + Sbjct: 206 AVQYIGDEFGWPNVSL--------FMYDG--------------QQLSLRALYSSGKLTKE 243 Query: 260 SQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETVYGEL 319 Q ++ + + N S G P P +P+ ++ G + Sbjct: 244 WQTLAVEAAGPIEASLRDNRIIIESSCMEGNELDSVGIP-PFRSAAAIPLRVRNRTIGVM 302 Query: 320 HWQNS----HVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQ 375 + +E + S+ + + +H +L MEER +AR+LHDS+ Q Sbjct: 303 FISSPDQRQFDDLNEDFMYSLGDHFTLCVENLRIYEHRSELARMEERNRMARDLHDSVVQ 362 Query: 376 VLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSA 435 + L + + + Q +++ Q +A +++R L+ + L A Sbjct: 363 KVFSLSFLAKGAENVLAGRDPVVQRSLSEIQQLSQEALKEMRTLIWQLHPAGLENGLLPA 422 Query: 436 LREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCV 495 L++ L + + L ++ +I +EA+ N KH+ + Sbjct: 423 LKQYGQGL----NLTIYDRTDG-VQELPRAIEEAFWRIGQEALNNVRKHSGRETAYIRLN 477 Query: 496 TAPDGNHTVYIRDNGIGIGEPKEPEG-HYGLNIMRERAERLGGTLTFSQPSGGGTLVSIS 554 DG + +RD G G ++ G+ MRERAE LGG+L+ + G T+V + Sbjct: 478 KQQDGAAVLEVRDEGTGFQVDRKKGRQTMGMRSMRERAETLGGSLSITSGRGKPTIVRAT 537 Query: 555 FRSAE 559 Sbjct: 538 IPLES 542 >UniRef50_B9LCJ4 GAF sensor signal transduction histidine kinase n=3 Tax=Chloroflexus RepID=B9LCJ4_CHLSY Length = 731 Score = 241 bits (615), Expect = 6e-62, Method: Composition-based stats. Identities = 62/298 (20%), Positives = 117/298 (39%), Gaps = 10/298 (3%) Query: 269 HILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETVYGELHWQNSH--- 325 ++ + E E + + +P+ G L+ ++ Sbjct: 426 GLVGRAARSGRIVRAEDVAAEADYLGLSERLDIRSELCVPLISNGKTLGVLNIESPERAG 485 Query: 326 -VSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQL 384 +L +V+ ML + + + QQ +EER +ARELHDS++Q L + + Sbjct: 486 LTEEDAAVLETVADMLAGAVENGRLYQRAQQAAALEERNRLARELHDSVSQQLFSMTLTA 545 Query: 385 TLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLT-LQQADLPSALREMLDTL 443 + + A +++ + A ++R L+ R L+ L +A+++ L Sbjct: 546 QAARSQFERNPARVPALLDRLHETATAALAEMRALIFQLRPPALRDQGLVAAIQQHAQHL 605 Query: 444 QNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHT 503 ++ ++ L+ ++ L +I++EA+ N +KHA A + + D Sbjct: 606 AHREGLRIELNVIGDERH-ARGIEQPLFRIVQEALNNIVKHAAARNVQIMLEFNAD-QVA 663 Query: 504 VYIRDNGIGIGEPKEPEG---HYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSA 558 + + D+G G P G H GL MRERA LGG+ G G V + Sbjct: 664 IRVIDDGKGFDPAARPSGEGRHLGLLSMRERAAELGGSFNVHSRPGAGAEVEVVVPLR 721 >UniRef50_A6SXZ6 Two-component sensor histidine kinase n=2 Tax=Oxalobacteraceae RepID=A6SXZ6_JANMA Length = 490 Score = 241 bits (615), Expect = 6e-62, Method: Composition-based stats. Identities = 60/259 (23%), Positives = 104/259 (40%), Gaps = 4/259 (1%) Query: 304 MQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERA 363 L T + G + W+ + + L + R + +H + +ER Sbjct: 223 WINLRATPRALEDGSVQWEGIMTNITASKLEQEEIIRSRA-QLAELSEHVN-TVKEKERT 280 Query: 364 TIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTF 423 IARE+HD L L+ +++ L LL R +P ++ A ++ + + Sbjct: 281 RIAREIHDDLGGNLTAIKMALALLTRRLPGKSSELLEKAAYVESLVDRTIETVHRIAGDL 340 Query: 424 RLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMK 483 R + L +A+ + Q + LD L +I +EA+ N K Sbjct: 341 RPGILDFGLVAAIDWQSKEFEKQLGIPCEFVSNQAEIDLDLDQATALFRIFQEALTNIAK 400 Query: 484 HANASEIAVSCVTAPDGNHTVYIRDNGIGIG-EPKEPEGHYGLNIMRERAERLGGTLTFS 542 HA AS ++V + P + I DNG GI + +G+ M ER+ +GG+L+ S Sbjct: 401 HAQASLVSVQLMHTPQ-YVRLEIIDNGRGIELADRAKPKSFGIRGMVERSVAMGGSLSVS 459 Query: 543 QPSGGGTLVSISFRSAEGE 561 GGT+V+I+ Sbjct: 460 TAPKGGTVVAINLPLPTTP 478 >UniRef50_C5V7S2 PAS/PAC sensor signal transduction histidine kinase n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V7S2_9PROT Length = 647 Score = 241 bits (615), Expect = 7e-62, Method: Composition-based stats. Identities = 71/383 (18%), Positives = 131/383 (34%), Gaps = 10/383 (2%) Query: 181 NQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKT--FNQMSSELHKLYRSLEASVEEKTR 238 L A ++ Q + E+ L F M++ + + E Sbjct: 270 RGLFDADGQLVEIQSVGRDISDRKQIEMNLRESEARFQVMTANVPGMVFQCTQR--EAGF 327 Query: 239 DLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRD--NEAAEYLELNVGENWRISEG 296 + E L S + R + + V + NW Sbjct: 328 NFTYISNGAEWLLGVSATAIEHDANEFLARILPEHVDAFNHSLTHSHREMTLWNWEGRVL 387 Query: 297 QPNPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQL 356 + + L T + G W V+ +E + L + + Sbjct: 388 SADNGIKWINLRATPRMLAGGGCIWDGVAVNVTES--KGIEEKLLHSQQMLRELSAHLEN 445 Query: 357 LLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQL 416 + +E IARE+HD L Q L+ LR+ ++L++ + E N + + SQ + + Sbjct: 446 IREDEHRHIAREIHDELGQALTALRMDVSLVRLNFGEANPQLLTHLQSMSQRVQRTVDIV 505 Query: 417 RELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIRE 476 R + ++ R + +AL + + T + L +ALD + +I++E Sbjct: 506 RHITSSLRPGALDMGIVAALEWLAEEFTGYTQIQCELALNDGNIALDEFSATAVFRIVQE 565 Query: 477 AVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPE-GHYGLNIMRERAERL 535 ++ N +HA A+++ V + D + DNG G +GL +RER L Sbjct: 566 SLTNIARHAQATQVEVIVTRSED-ELCFEVCDNGTGFDPGAIENCKSFGLIGIRERVAML 624 Query: 536 GGTLTFSQPSGGGTLVSISFRSA 558 G G GT + + A Sbjct: 625 SGHFEIESRQGAGTCLRVHIPVA 647 >UniRef50_B0K3K4 Histidine kinase n=11 Tax=Thermoanaerobacterales RepID=B0K3K4_THEPX Length = 388 Score = 240 bits (614), Expect = 8e-62, Method: Composition-based stats. Identities = 66/357 (18%), Positives = 136/357 (38%), Gaps = 13/357 (3%) Query: 213 KTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQAL--NTSQIDVHCFRHI 270 + ++ ++L +L + ++E + K+ L S+ + Q + Sbjct: 40 EEARRLEAQLEELKIQVINVIKEVELCERKEKKCRLKLAFVSKQFGHLSEQAIREAYEEA 99 Query: 271 LQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETVYGELHWQNSHVSSSE 330 + + E + E E + + + + L++ N + Sbjct: 100 KEAQIELALKRREEKELIEKRNELERKLVDNKAIIEKAEKLVSQINVALNYLNRDLKKMN 159 Query: 331 PLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRS 390 L + + + EER IARE+HD AQ ++ + + L ++ Sbjct: 160 TQLEQLKDKRALSVKIIE--------AQEEERKRIAREIHDGPAQAMANVLSKSELCEKL 211 Query: 391 IPEDNATAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSA 449 I +D A+ + + + + +++R+++ R L L AL + +T Sbjct: 212 ITKDIEQAKIELKNLKNIVQQSLKEVRKIIYDLRPSALDDLGLIPALSRYIKNFSEETGI 271 Query: 450 KLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDN 509 + L ++++ ++++EA+ N KH+ A +V ++ I+D+ Sbjct: 272 FVDFSVLSDYKRLSPEIEITCFRVVQEALTNIKKHSKAKNASVKFEFGM-RFISIIIKDD 330 Query: 510 GIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEESQLM 566 GIG + +G YGL MRER E L G S GT + IS E+ Q++ Sbjct: 331 GIGFDKENIGQG-YGLMGMRERIEILNGKFEISSFKNNGTQIYISIPVRGVEDDQIV 386 >UniRef50_A5FQK5 Multi-sensor signal transduction histidine kinase n=5 Tax=Dehalococcoides RepID=A5FQK5_DEHSB Length = 1229 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 76/405 (18%), Positives = 144/405 (35%), Gaps = 32/405 (7%) Query: 172 IRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEA 231 I H+++ P L L G+ + + + Sbjct: 832 IEHRIIRPDGHLRYV------HDQAEIILSDT-----GVPLRVLGTVQDVTERKLAEEAL 880 Query: 232 SVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENW 291 E+ L + ++ + LNTS + + D + E++ Sbjct: 881 RDSERRYRLLADN-MVAFIWTIDEHLNTSYLSPSIIHLLNYYPEDILGKHISMIFTSESY 939 Query: 292 R----ISEGQPNPELPMQILPVTMQ-ETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYF 346 + + + + P+ ++ + G++ ++ + + +LG Sbjct: 940 EKLLDVYQQVRKTGSELIVNPLELEVKRQDGKVIITDTLMRPLYDENHHFLGILGASRDI 999 Query: 347 NQAQKHFQQL---------LLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNAT 397 ++ + +L L EERATIARELHD + Q L+ L++ L K S+P+ + Sbjct: 1000 SERKAAEYELHTLSQRLVELQEEERATIARELHDQVGQSLTVLKLMLDKAKDSLPDRSEK 1059 Query: 398 AQSIMADFSQALNDAYRQLRELLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLTLDCR 456 +A+ +++ +R + R L L AL D +QT + Sbjct: 1060 L---LAEAQPLVSELISSVRNMSLDLRPRMLDDLGLLPALLWYFDRFSSQTGINVNFQHA 1116 Query: 457 LPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEP 516 Q+ + +II+EA+ N +++A + V A + I+D+G G Sbjct: 1117 GLKRKFSPQLGTAVYRIIQEALTNVVRYAGVDHVLVR-ARADKNQLALVIQDSGKGFNPA 1175 Query: 517 KEPEG-HYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEG 560 + G GL M+ER LGG L G GT + + E Sbjct: 1176 QRATGMSSGLKGMKERVRFLGGKLDIESKPGEGTHIIVELPLNEE 1220 >UniRef50_B9XSI9 Multi-sensor signal transduction histidine kinase n=1 Tax=bacterium Ellin514 RepID=B9XSI9_9BACT Length = 656 Score = 240 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 78/398 (19%), Positives = 138/398 (34%), Gaps = 24/398 (6%) Query: 180 LNQLVTASQRIEHGQFDSPP--LDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKT 237 L L + I ++ N +EL + L + E+ Sbjct: 253 LEHLQIVANNIATSIYNERLYKKVRNQKDELAEQITERKRTEEALRQSEERFRIISEQSL 312 Query: 238 RDLHEAKRRL----------EVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNV 287 ++ + Y S L+ S + IV +N E + Sbjct: 313 MGIYIIQGERFKYANPKFAEMFGYDVSGMLSLSSVFDVIVEKERPIVSENVRLRL-EGQI 371 Query: 288 GENWRISEGQPNPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFN 347 GQ + I + + GE + +E ++ + + Sbjct: 372 EGIRYRFHGQRKDAGLLTIEAHGFKAELNGEPVILGTAQDVTEREMDE-AELKRTTEQLQ 430 Query: 348 QAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQ 407 + +L ER IARELHD + Q L+ L+I L ++R ++ + D Sbjct: 431 TLSRRLLEL-QESERRHIARELHDEIGQGLTALKINLQAVQRMA--NSTAFSPRLLDSIG 487 Query: 408 ALNDAYRQLRELLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQM 466 ++ RQ+R L R + L L +ALR D + ++ + D + Sbjct: 488 IVDKTLRQVRNLSLDLRPSMLDDLGLFAALRWYADQQAQRAGLRIQFAAEPMEMRQDPAL 547 Query: 467 QVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIG-----EPKEPEG 521 + ++ +EA+ N ++HA A + + + + + IRD+GIG E Sbjct: 548 ETACFRVAQEALTNIVRHAEAQNVTIDLNV-AEKDLQLTIRDDGIGFDMKKVREHVAAGS 606 Query: 522 HYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAE 559 GL M ERA +GG + F G GT V F ++ Sbjct: 607 SLGLLGMEERASLMGGRVEFKSTPGEGTEVYAWFPISK 644 >UniRef50_B8CZJ7 Integral membrane sensor signal transduction histidine kinase n=1 Tax=Halothermothrix orenii H 168 RepID=B8CZJ7_HALOH Length = 352 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 57/220 (25%), Positives = 117/220 (53%), Gaps = 5/220 (2%) Query: 340 LGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPE-DNATA 398 L + + +K ++L ++EER IARELHDS++Q L + + L L+ I E D+ Sbjct: 133 LEQQQEKLELEKENKKLAIIEERNRIARELHDSVSQNLFGINLNLNTLEVLIDEGDHDRV 192 Query: 399 QSIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRL 457 + + D + + + ++R ++ + L++ D AL +++ +N+ + K+T Sbjct: 193 RKTVEDLKKMVQEVQTEMRLMIYELKPVHLREKDFFEALESLVELYRNRYNLKITTHLNG 252 Query: 458 PTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPK 517 +++++Q+ L ++ +EA+ N +KHA+A +++++ +G T+ I+DNG G + Sbjct: 253 NENRVESEVQLALYRVAQEALNNIVKHADADKVSITLGIGNNG-ITMAIKDNGKGFNVGR 311 Query: 518 EPEGH--YGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 G +G++ M++R +GG G GT V +S Sbjct: 312 VKAGSGRFGISGMKDRVNDVGGDFDIESQPGQGTTVKVSI 351 >UniRef50_Q5SJ33 Sensor histidine kinase n=3 Tax=Thermus RepID=Q5SJ33_THET8 Length = 515 Score = 239 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 86/362 (23%), Positives = 145/362 (40%), Gaps = 29/362 (8%) Query: 223 HKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEY 282 L V + + R L L++ QAL +L +R AE Sbjct: 156 QVFLEVLAHEVAGALQAVVARSRDLLTLFEVDQALKAEANLDRLLEGLLDRIRAWAGAEG 215 Query: 283 LELNVGENW-----RISEGQPNPELP--------------------MQILPVTMQETVYG 317 + + + R+ +G P P + LP+ +E V G Sbjct: 216 GGVLLLDEEGFLLARVVQGLALPSHPFLPEGAWKAALQGPVFVEKGVLALPLKAREPV-G 274 Query: 318 ELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVL 377 L + +S P L+ ++S + + QA ++L + EER IARE+HD LAQ L Sbjct: 275 VLVLKGEDLSRRIPFLSFLASQVALAVRNAQAYLKAEELAINEERTRIAREIHDGLAQSL 334 Query: 378 SYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSAL 436 +++ ++L L++R +D A +A+ + L R++R + R L++ +L Sbjct: 335 AFMALKLDLVERLWEKDKEAALGALAEVRETLRAQIREVRRSIFALRPIDLERYGFLESL 394 Query: 437 REMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVT 496 R Q ++ L + L ++ L ++++EA+ NA KHA + + V Sbjct: 395 RRYAQAFAEQAGFRVQLSLP-ERVGLSQASELVLFRVLQEALTNAAKHARPTRVEVVLEP 453 Query: 497 APDGNHTVYIRDNGIGIG-EPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 + + +RDNG G + G +GL MRER E GG G GT V Sbjct: 454 LGERGARLVVRDNGRGFAVPEAQGLGGFGLTQMRERVEARGGRFWVVSAPGRGTEVGAEV 513 Query: 556 RS 557 Sbjct: 514 PY 515 >UniRef50_B2T8J5 Multi-sensor signal transduction histidine kinase n=10 Tax=Burkholderia RepID=B2T8J5_BURPP Length = 553 Score = 239 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 77/393 (19%), Positives = 140/393 (35%), Gaps = 47/393 (11%) Query: 216 NQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTS-QIDVHCFRHILQI- 273 Q +EL +LE VE++TR L E+ RL + + Q FR I++ Sbjct: 157 QQAETELSSARDALEQQVEQRTRQLAESNTRLSAQIDERRRAEANLQASEARFRTIVETS 216 Query: 274 ---VRDNEAAEYLELNVGENWRISEGQPNPELPMQILP-----VTMQETVYGELHWQNSH 325 + E + L V E R G + + ++ + L + S Sbjct: 217 PIPLCITSMPEGVILYVNEPLRELFGLDTGMRTLTNIVDFYIDPADRDRLVSHLRAEGSF 276 Query: 326 VSSSEPLLN----------------------------------SVSSMLGRGLYFNQAQK 351 +S + + L + Sbjct: 277 NNSEVHMRRVDGSPFWAIATARVATFGDAPAIYVGLSDITSRKRIEQELFESRNQLRELS 336 Query: 352 HFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALND 411 + + + EER IA E+HD L Q+L+ L++ ++LLK + +D + D + + Sbjct: 337 AYMEAIREEERKRIAMEIHDELGQLLTALKMDVSLLKMRLGKDPDAMRKA-DDMRELVEK 395 Query: 412 AYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLL 471 + + R + SAL +++ + L L + Sbjct: 396 TIWMVCNVANHLRPVALNFGVVSALEWLVEDFIRRHGIPCQLHINGGEPVLPEACATAVF 455 Query: 472 QIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEG-HYGLNIMRE 530 +I++ ++ N +HA+A+ V+ + +++ D+G G G YGL M+E Sbjct: 456 RIVQASLTNVGRHAHATRADVTLTSTA-AALDLHVSDDGCGFDPGMARTGYSYGLLGMQE 514 Query: 531 RAERLGGTLTFSQPSGGGTLVSISFRSAEGEES 563 RA +GG +T G GT +SI G E+ Sbjct: 515 RARLIGGAMTIDSAQGMGTAISIHIPLTGGAEN 547 >UniRef50_Q67RQ8 Two-component system sensor kinase n=1 Tax=Symbiobacterium thermophilum RepID=Q67RQ8_SYMTH Length = 500 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 89/492 (18%), Positives = 177/492 (35%), Gaps = 83/492 (16%) Query: 148 LLVVAISLAGGIGIFTLVFFTLRRIR-------------HQVVAPLNQLVTASQRIEHGQ 194 L++AI L + + L Q P+++++ ++R+ G Sbjct: 12 ALLLAIGLTPIVLLPALGLAPRWLFWAAPPLALLLYLLSRQFTRPVSEVMALARRLREGD 71 Query: 195 FDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCS 254 + + + +LA+T ++ +L + R+LE V +T L +L + Q Sbjct: 72 LRARAVLPPGTDWF-MLARTMTDLAEQLEAVTRNLEEQVAVRTAALARKADQLRAVGQVG 130 Query: 255 QALNTSQIDVHCFRHILQIVRDNEAAEYLEL----------------------------- 285 Q + + +++R + + Sbjct: 131 QQVAAVLDPDVLLHFVTRVMRGTFGYDVAAVLLQHGDYLVLAACAARGREEVPLGRAFPL 190 Query: 286 ----NVGENWRISEGQPNPELPM---------------------QILPVTMQETVYGELH 320 ++ G+P E +P+ + + G + Sbjct: 191 TGPTPSPLARALAAGEPGGERAEGEHPESGPPTPLLPDTAPRAELAIPIRVADRTLGLMV 250 Query: 321 WQN----SHVSSSEPLLNSVSSMLGRGLYFNQAQK---HFQQLLLMEERATIARELHDSL 373 Q+ + +++ + L + + ++L + EER +ARE+HD+L Sbjct: 251 VQSFDPRPFDEEDRFTVQTIAGQVAVALENARLLEAERRLRRLAVTEERNRMAREIHDTL 310 Query: 374 AQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADL 432 AQ + +QL ++ D TA+ + ++ ++ R + R L+ L Sbjct: 311 AQGFMGILMQLRAME--AAADPETARFHREVAAALAQESLQEARRSVWKLRPHPLEDRGL 368 Query: 433 PSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAV 492 AL + L+ Q AL+ ++V LL+I +EA+ NA+K+A A+ + V Sbjct: 369 AEALAAEVAALEGQFGLIGRFHMDGDAAALEPPVEVALLRIAQEAIHNAVKYARATRLDV 428 Query: 493 SCVTAPDGNHTVYIRDNGIGIGEPKEP----EGHYGLNIMRERAERLGGTLTFSQPSGGG 548 T DG + + D+G+G P G YGL +M +RA ++GG L GGG Sbjct: 429 GL-TIRDGMAVLTVADDGVGFDPASPPKPAAGGGYGLGMMADRARQVGGGLEVDARPGGG 487 Query: 549 TLVSISFRSAEG 560 + + Sbjct: 488 CRIVARVPLRKE 499 >UniRef50_A6SWF1 Sensory box histidine kinase n=1 Tax=Janthinobacterium sp. Marseille RepID=A6SWF1_JANMA Length = 626 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 60/289 (20%), Positives = 107/289 (37%), Gaps = 6/289 (2%) Query: 271 LQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETVYGELHWQNSHVSSSE 330 + + + V W +G + + L + S E Sbjct: 344 YRAILRSVMTTGQPAEVSGRWTRPDGGIVFFAVHAVAEFDSKGEAESVLAISRNITSIIE 403 Query: 331 PLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRS 390 + L + + + + +ER IARELHD LAQ LS LR+ ++++K Sbjct: 404 A-----ENQLRQSQKLLRQLADRSETSIEDERKHIARELHDDLAQHLSALRMNVSVMKLE 458 Query: 391 IPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAK 450 ++ + L+ + R ++T R T + AL ++ Sbjct: 459 FGHLSSAFSGQAETMIERLDATIKIARNVITALRPTALDMGIVQALEWLVKDFSTHKEIS 518 Query: 451 LTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNG 510 L L L + + +I +E++ N +HA A + V+ DG + IRD+G Sbjct: 519 CRLHIHDENLILSDRSATAIFRIAQESLRNISRHAEACNVDVNLS-HKDGMCLLAIRDDG 577 Query: 511 IGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAE 559 G P +GL ++ER LGG + G GT + ++ + E Sbjct: 578 RGFNTTNVPFNSFGLMGIKERVLILGGKVEIESEEGQGTTIRVNIPTTE 626 >UniRef50_D1C657 GAF sensor signal transduction histidine kinase n=2 Tax=Bacteria RepID=D1C657_SPHTD Length = 492 Score = 238 bits (607), Expect = 5e-61, Method: Composition-based stats. Identities = 85/425 (20%), Positives = 156/425 (36%), Gaps = 27/425 (6%) Query: 154 SLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAK 213 S G + + +V + + ++ + + ++L Sbjct: 50 SWPGYLLLAGIVLIGTLFFAEAIFKVIGRMQASLAEQNQELLALHEAGLAITSQL----- 104 Query: 214 TFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQI 273 + + L K+ V + L + L + + + Sbjct: 105 ---DLQTVLQKVVDEARELVGARYGALTLLSEEGWPEAFLTSGLTPEERERIGPEPVGHG 161 Query: 274 VRDNEAAEYLELNVGEN--WRISEGQPNPELPMQIL---PVTMQETVYGELHW-----QN 323 + ++ + L + + S G P M+ L P+ + G L+ + Sbjct: 162 MLGVVMSDGVVLRIPDVTKDPRSFGFPPHHPVMRSLLAVPIRSHGRILGSLYLTEKEGAS 221 Query: 324 SHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQ 383 ++ + L ++ + + + Q L + EER IARE+HDSLAQVL Y+ + Sbjct: 222 EFDAADQARLERFATQTALAIENARLHQRVQALAIAEERERIAREMHDSLAQVLGYVNTK 281 Query: 384 LTLLKRSIPED-NATAQSIMADFSQALNDAYRQLRELLTTFRLTLQ-QADLPSALREMLD 441 + + A + +QA DAY +RE + R +L+ + + L++ L Sbjct: 282 AQAAQELLRNGQQERASEQIGQLAQAARDAYADVRENILGLRTSLEREREFLETLQDYLQ 341 Query: 442 TLQNQTSAKLTLDCR---LPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAP 498 Q+Q+ + + L L ++ LL+II+EA+ N KH+ AS V + Sbjct: 342 RWQDQSGIPVDFRTTPAGITDLRLSPLAELQLLRIIQEALANVRKHSGASRATVHIHRSA 401 Query: 499 DGNHTVYIRDNGIGIGEPKEPEG---HYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 G + DNG G +GL MRERA+ +GGTL G GT V++ Sbjct: 402 -GWIGATVEDNGSGFDPSTIGRSAFPRFGLATMRERAQAVGGTLEIRSAPGEGTRVAVRL 460 Query: 556 RSAEG 560 Sbjct: 461 PVGAA 465 >UniRef50_A5UUR7 Multi-sensor signal transduction histidine kinase n=2 Tax=Roseiflexus RepID=A5UUR7_ROSS1 Length = 469 Score = 237 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 71/390 (18%), Positives = 137/390 (35%), Gaps = 20/390 (5%) Query: 196 DSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKT------RDLHEAKRRLEV 249 + L + + S+L L V+ T + +R + Sbjct: 79 WVSRQEQRYQTGLEQALRDQQRAYSQLALLSEVNRRIVDSATLDDILDAAMTFPRRLVPA 138 Query: 250 LYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQILPV 309 LN + + + + R + +LP+ Sbjct: 139 RATAVVLLNPNGFVEARAQGMPGEELSRLRRALGIADSVATARQPQMIERSGCACLVLPL 198 Query: 310 TMQETVYGELHW----QNSHVSSSEPLLNSVSSMLGRGLYFNQAQKH------FQQLLLM 359 + G + S LL ++++ + + + + + + Sbjct: 199 HDGMALLGWIELHLEDSLPVASDELALLETIANEVAEAIASARRRSREERAIYQLERAIA 258 Query: 360 EERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLREL 419 EERA IAR++HD +AQ L+++R+++ L I D ++ + + L + R+LR Sbjct: 259 EERARIARDIHDGIAQSLAFMRMRVDLWLDWIEHDPQRLRAELLELKTTLREQIRELRRA 318 Query: 420 LTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAV 478 + R + LR + Q + + +D + +++ ++++EA+ Sbjct: 319 IFALRPVQFDELGFVGGLRRYIVEFAGQHNWDIDVDLTGTPSTIPPEIEAVAFRVVQEAL 378 Query: 479 LNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEP--EGHYGLNIMRERAERLG 536 N KHA A+ + V +G + +RD+G G P GH GL MRER L Sbjct: 379 TNVAKHAAATRVEVMIGRVDEG-LQIVVRDDGRGFDPGALPDAPGHVGLRQMRERLAALR 437 Query: 537 GTLTFSQPSGGGTLVSISFRSAEGEESQLM 566 G LT G GT + G + + Sbjct: 438 GQLTILSRPGAGTELRAWIPLPMGAREKAV 467 >UniRef50_Q1CZ92 Sensor histidine kinase n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1CZ92_MYXXD Length = 1080 Score = 237 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 59/249 (23%), Positives = 101/249 (40%), Gaps = 10/249 (4%) Query: 319 LHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLS 378 L +N + + + G + + EER +ARELHD Q L+ Sbjct: 825 LVGRNLALRTLQAEREQALEEAEAGRERLRRLTMRLEAAKEEERKHLARELHDEFGQALT 884 Query: 379 YLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLT-LQQADLPSALR 437 +++ L L+ + + + ++ Q+R L R L + L +AL Sbjct: 885 AVKLNLGLMNTFASPSV----TRLPEVVALIDRLIGQVRALSVDLRPPQLDELGLVAALE 940 Query: 438 EMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTA 497 L + ++ +L +L + + +II+EAV NA++HA+A I V T Sbjct: 941 WYLREVARRSGVELVFTASSAPPSLSKGRDIAVFRIIQEAVTNALRHASARRIDVRLETV 1000 Query: 498 PDGNHTVYIRDNGIGIGEPK----EPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSI 553 + +RD+G G + G +G+ M+ER LGG + G GT V Sbjct: 1001 G-CVIRLEVRDDGKGFDVNQVLMGRGPGSFGVFGMQERVRDLGGHFEVTSRPGEGTRVVA 1059 Query: 554 SFRSAEGEE 562 R+ E E+ Sbjct: 1060 EVRADERED 1068 >UniRef50_C5SBA0 Histidine kinase n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SBA0_CHRVI Length = 554 Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats. Identities = 98/420 (23%), Positives = 166/420 (39%), Gaps = 63/420 (15%) Query: 199 PLDTNLPNELGLL---AKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQ 255 P ++ E G+L A+ ++ EL LY ++ V +TR L + L++LY + Sbjct: 114 PGASDTLTETGVLQGIAQDIRSLNEELTDLYDDMDNRVARQTRRLAQKTASLKILYDVAA 173 Query: 256 ALNTSQIDVHCFRHILQIVRDNEAAEYLELNV---------------------------- 287 ++ ++ L+++++ A + + Sbjct: 174 GIHQAESVEALLLRFLRVLKEMINARAATVRLVLPDGTRRLIGSIGLNDDLVRESDMTPV 233 Query: 288 ----------------------GENWRISEGQPNPELPMQILPVTMQETVYGELHWQNSH 325 + E+ + +P+ ++ G Sbjct: 234 DLCLCGNVLAPGDILCDNDARYCSRIYGRRMFASSEVEVVTVPLEHRDERLGVYTLFVDR 293 Query: 326 V-----SSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYL 380 LL +V LG + ++ +L ++EER +A ELHDSLAQ L+ L Sbjct: 294 PGLQGREDILELLFTVGHHLGVAIAKQRSDAEAHRLSIVEERNALAHELHDSLAQTLASL 353 Query: 381 RIQLTLLKRSIPEDN--ATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALRE 438 R Q +L S+ A A++ +A L++A+ +LRELL +FR L + L AL + Sbjct: 354 RFQCRMLDDSLAGCPIPAEARNDLARIRNGLDEAHTELRELLASFRAPLDRRGLVPALAK 413 Query: 439 MLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAP 498 + L +T + L A ++ LL+I +EA+ N KHA A + V Sbjct: 414 LTQRLGRETGTHVLFQNDSRPFELSATEELQLLRIAQEALANIRKHAQAHTVRVLLTRES 473 Query: 499 DGNHTVYIRDNGIGIGEP---KEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 G H + I D+G+G P P GL+I+ ERA R+G L G GT V + F Sbjct: 474 GGRHVLLIEDDGVGFSPPDAQSPPGERIGLSILEERARRIGAELRIESEPGEGTRVEVVF 533 >UniRef50_C1F9F5 Two component regulator propeller/histidine kinase domain protein n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F9F5_ACIC5 Length = 1025 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 61/211 (28%), Positives = 103/211 (48%), Gaps = 4/211 (1%) Query: 357 LLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQL 416 ++ ER IARE+HD+LAQ + + +QL ++ R +P A+ + + + Sbjct: 816 AVLRERTRIAREIHDTLAQGFAAVSVQLEVVSRLLPNATEGARHALDTARSLARSSLQDA 875 Query: 417 RELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIR 475 R + R + +Q DL + LR++ D L + K L+ L +++ L +I + Sbjct: 876 RTSIWDLRSQSSEQEDLATRLRKLADHLCAPANIKAQLEVNGAYRPLTPEVETELTRIAQ 935 Query: 476 EAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGI--GEPKEPEGHYGLNIMRERAE 533 EA++NA++H+ + IA+ + + +RDNG G P GHYG+ M ERAE Sbjct: 936 EAIVNAVRHSETASIALRLSFH-ERQIELSVRDNGRGFSGAPPAARPGHYGITGMHERAE 994 Query: 534 RLGGTLTFSQPSGGGTLVSISFRSAEGEESQ 564 R+GG LT G GT V ++ + Sbjct: 995 RIGGKLTIESRPGEGTEVHLTLPLKRDGGEK 1025 >UniRef50_A9B046 Integral membrane sensor signal transduction histidine kinase n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B046_HERA2 Length = 546 Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats. Identities = 79/356 (22%), Positives = 139/356 (39%), Gaps = 15/356 (4%) Query: 219 SSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNE 278 S ++ +L E + T +A + + LY S+ L+ +Q+ V ++ I Sbjct: 187 SDDIDQLTWKYENYLVIATPVRDQANQVIGALYVRSRPLSQNQVIVALLMFVIFIASSIV 246 Query: 279 AAEYLELNV----------GENWRISEGQPNPELPMQILPVTMQETVYGELHWQNSHVSS 328 + L + Q L L V + + E+ S Sbjct: 247 SIIANALIGMVYGWFVARNFVRRLVHLTQATDSLAAGDLSVRVNDGSIDEIGHLARRFDS 306 Query: 329 SEPLLNSVSSMLGR-GLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLL 387 L S ML + + QL ++EER +AR+LHDS++Q L + + Sbjct: 307 MAQQLESNVKMLRQLADRNAALVEQAGQLAIVEERNRLARDLHDSVSQELFSVTMLAAAA 366 Query: 388 KRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQ 446 + +P A+S + SQ A + R L+ R L L ALR++ + + Sbjct: 367 RNLLPAQPDKARSQVEQLSQMAQRALHETRGLIFALRPAALGDQGLVPALRQLTEEAARR 426 Query: 447 TSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYI 506 ++ L+ + + L +I +EA+ N KH+ + +VS T+ + Sbjct: 427 QGLQIELNTNGE-RRIPLDHEQALYRICQEALANVTKHSGVNSASVSLEYEAHRT-TLEV 484 Query: 507 RDNGIGIGEPKEPEGH-YGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGE 561 RD G G + K H GL ++ERA+ +GGT+ + G GT + I + Sbjct: 485 RDRGRGFDQDKPRNSHSLGLISIQERAKAVGGTVELTAAPGQGTSLRIVVPRTQTG 540 >UniRef50_A9B363 Integral membrane sensor signal transduction histidine kinase n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B363_HERA2 Length = 517 Score = 235 bits (599), Expect = 4e-60, Method: Composition-based stats. Identities = 72/339 (21%), Positives = 139/339 (41%), Gaps = 12/339 (3%) Query: 229 LEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLEL--- 285 VE+ ++L + + L+ L + AL++ + + R A+ + + Sbjct: 181 TRQKVEQLAQELAQERDYLQQLSAITAALSSEVQLARVLAQVAEAGRSLANAQAVTVALL 240 Query: 286 -NVGENWRISEGQPNPELPMQILPVTMQETVYGELHW--QNSHVSSSEPLLNSVSSMLGR 342 + S G P+ LP + + + G L++ ++ L + Sbjct: 241 EDPEWRIVASVGSPDTNLPSLEIMLHAKGETIGRLNYWSIQPTNAALRQALQPFADAAAM 300 Query: 343 GLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIM 402 +Y Q + + + ER +AR+ HD+LAQ L+ LR+Q+ R++ + AQ + Sbjct: 301 AIYNAQLYEQARFSATLAERNRLARDFHDTLAQQLTGLRLQIEAGMRNLHQ-PEKAQLRL 359 Query: 403 ADFSQALNDAYRQLRELLTTF-RLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLA 461 A LR + + L L E++DT +T+ + L Sbjct: 360 QKAYDLALAALHDLRRSVWNLSAPAIDGRVLSDVLAELVDTFHQRTNIQSQYSHDGQELT 419 Query: 462 LDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGI---GEPKE 518 L + + + +L+++ EA+ N KHA A +A+ T G + + D+G G + Sbjct: 420 LPSDVAIQVLRVVNEALSNVEKHAQAKHVAIR-STVAAGQLQITVSDDGQGFELAAVQQT 478 Query: 519 PEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRS 557 G +GL MRER + + G+L+ GTL+++ Sbjct: 479 ASGGFGLTSMRERTQLIQGSLSIQSQPSAGTLLTLCLPL 517 >UniRef50_C5AIA0 Multi-sensor signal transduction histidine kinase n=24 Tax=Burkholderia RepID=C5AIA0_BURGB Length = 769 Score = 235 bits (599), Expect = 4e-60, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 98/248 (39%), Gaps = 11/248 (4%) Query: 328 SSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLL 387 + L + Q + EE+ IARELHD L Q L+ L++ L+ + Sbjct: 522 RDVTERVQAENALKASREELRELSANLQRVREEEKTRIARELHDDLGQQLTALKMDLSAV 581 Query: 388 KRSIPED-----NATAQSIMADFSQALNDAYRQLRELLTTFRLT-LQQADLPSALREMLD 441 + + D +A+ + + + ++ +R + R L L A+ + + Sbjct: 582 EHRLLRDGTGEAHASVVEPLREMRRLIDATVASVRRIAADLRPVMLDDLGLVPAIEWLAN 641 Query: 442 TLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGN 501 N+ ++ + L +I++EA+ N +HA AS +A++ D Sbjct: 642 DFTNRYGIEVERRIDPGDVRFPNATATALFRIVQEALTNVARHAEASHVALTLG-IEDRQ 700 Query: 502 HTVYIRDNGIGIGEPKEPEG----HYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRS 557 + I D+G+G + +GL +RERA LGGT+ G ++I+ Sbjct: 701 CVLRIVDDGVGADQADGRRAPDDKSFGLLGIRERAHMLGGTVRMETARNQGYALTITIPL 760 Query: 558 AEGEESQL 565 + L Sbjct: 761 PSTPDPNL 768 >UniRef50_Q2SUK5 Two-component hybrid sensor and regulator n=33 Tax=Burkholderiaceae RepID=Q2SUK5_BURTA Length = 740 Score = 234 bits (597), Expect = 7e-60, Method: Composition-based stats. Identities = 67/285 (23%), Positives = 105/285 (36%), Gaps = 8/285 (2%) Query: 280 AEYLELNVGENWRISEGQPNPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSM 339 L+ E R+ E ++L + E EL N + Sbjct: 451 VHALQGERIERRRVQEKTVRLNEANELLEQRVAERTS-ELQTANDELRREIVERERAEEA 509 Query: 340 LGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQ 399 L R + +ER IARELHD LAQ L+ LR+ L + Sbjct: 510 LARSREELREIAAISSTAREQERGRIARELHDELAQTLAMLRLDLE----RVSTTGNELA 565 Query: 400 SIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLP 458 + L+ A R + + R L L A++ ++ Q + TL P Sbjct: 566 GRFTEMRGLLDGAVAATRRIASDLRPLMLDDLGLVPAIQWLVQAFQQRHGIGCTLIVDPP 625 Query: 459 TLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEP-K 517 L L +I++E++ N +HA AS + + + A D + +RDNG+G Sbjct: 626 ELDLVEPQASTTFRILQESLTNVGRHARASHVDIRLI-ADDREVMLSVRDNGVGFDTENP 684 Query: 518 EPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEE 562 +GL +RERA + GTL+ G GT + + E Sbjct: 685 RKPNSFGLVGLRERAYLVQGTLSVQTAPGRGTAIEVHIPLVRPHE 729 >UniRef50_C6P6J2 PAS/PAC sensor signal transduction histidine kinase n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P6J2_9PROT Length = 355 Score = 234 bits (597), Expect = 7e-60, Method: Composition-based stats. Identities = 61/283 (21%), Positives = 114/283 (40%), Gaps = 8/283 (2%) Query: 284 ELNVGENWRISEGQPNPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRG 343 + +W N E+ +L T Q G++ W+ V+ ++ L+ + + R Sbjct: 61 QTMSFWSWEGRVTLANGEMKWLVLGSTPQSGENGKIEWEGLAVNVTKAKLDEIELL--RS 118 Query: 344 LYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMA 403 + Q +ER IARE+HD + +L+ +++ L +K +P+ + Sbjct: 119 QQQLREFSSHIQDAKEQERLRIAREVHDEIGGLLTAIKMDLAWIKERLPKSKKILTDKTS 178 Query: 404 DFSQALNDAYRQLRELLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLTLDCR---LPT 459 + A R L + R L + +A+ + +T K L Sbjct: 179 AIENMVGKAMTAARNLAHSLRPGYLDSFGIVAAIEMEASEFEQRTGIKCLLAHNEEEDEE 238 Query: 460 LALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKE- 518 L L + + L +I +EA+ N MKH+ A+++ V + + + I DNG G + Sbjct: 239 LELHPDVSIALFRIFQEALTNIMKHSRANKVEV-LIHNSQEHIELTISDNGCGFSQDARS 297 Query: 519 PEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGE 561 +GL ++ER GG ++ S GT V + G+ Sbjct: 298 KPRSFGLRGIQERVAHFGGEVSISSTPEQGTRVYVKIPHFSGD 340 >UniRef50_B8G147 Multi-sensor signal transduction histidine kinase n=2 Tax=Desulfitobacterium hafniense RepID=B8G147_DESHD Length = 779 Score = 234 bits (597), Expect = 7e-60, Method: Composition-based stats. Identities = 66/287 (22%), Positives = 122/287 (42%), Gaps = 24/287 (8%) Query: 301 ELPMQILPVTMQETVYGELHWQNS----HVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQ- 355 L +P++ ++ V G L+ S LLNS+ LG + + + Sbjct: 484 ALSHVYVPLSYKDRVLGVLNIIASNLESFTKEDLNLLNSIGLQLGVAIENAELWVELNKK 543 Query: 356 ------------LLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMA 403 EER I+RELHD +Q ++ L + L + + D A +++ Sbjct: 544 EMLRKQLLNKVITAQEEERKRISRELHDESSQSIAALGVGLKSVIEIMEFDKEYALTVLE 603 Query: 404 DFSQALNDAYRQLRELLTTFRLTL-QQADLPSALREMLDTLQNQTSAKLTLDCRLPTLAL 462 D + ++L +++ R +L L A+R +++ + T K + L L Sbjct: 604 DLKNNTSSILKELHQIIYDLRPSLLDDLGLLPAIRWYVESRLSNTGIKPHVAFTGDPLRL 663 Query: 463 DAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIG-----EPK 517 + ++ + +I++E++ NA+K++NA + + D VYI D+G G K Sbjct: 664 TDETEITIFRIVQESITNAVKYSNAKNLYLGLEFGQDS-LFVYIEDDGDGFNIEKALAQK 722 Query: 518 EPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEESQ 564 + + +GL M ERAE +GG + S GT + + EE + Sbjct: 723 DGKESFGLLGMTERAELIGGEIEIKSRSNNGTRIELKLDYQNFEEDR 769 Score = 50.7 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 29/167 (17%), Positives = 54/167 (32%), Gaps = 2/167 (1%) Query: 140 QHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPP 199 Q+ + + V + L + L + + PL +L + + R+ G + Sbjct: 150 QNSILQWVYNVRKLMLNLTLYGVLLGAVAALILSTLITRPLKRLASYALRLGKGDLEEDI 209 Query: 200 LDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNT 259 + +E+ LA N+M +L + L S E L E + LN Sbjct: 210 V-IRGKDEIVELALCLNRMRKDLFTGMQMLRQSEESNRTLLEAISAAGEGIAVFQDNLNK 268 Query: 260 SQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQI 306 + + AE LE+ E G+ E+ + Sbjct: 269 KGTM-KFVNEQYENLTGYTKAELLEMEANEIIDSESGKQIEEVWERS 314 >UniRef50_Q0KDJ4 Signal transduction histidine kinase containing PAS/PAC sensor domain n=3 Tax=Burkholderiales RepID=Q0KDJ4_RALEH Length = 355 Score = 234 bits (597), Expect = 7e-60, Method: Composition-based stats. Identities = 68/322 (21%), Positives = 115/322 (35%), Gaps = 7/322 (2%) Query: 238 RDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQ 297 R + + + + S D Q+ D + A GQ Sbjct: 27 RYVLVNDAFMAACGRSEAEILGSTPDKVWSEEWGQVYLDTDKAVVASGIRRRYEECRHGQ 86 Query: 298 PNPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLL 357 + + ++ G + S +L + + Q + Sbjct: 87 DGSLRWFDTIKMPIRGQ-DGAVVGTVGISRDITDRKRSEQELLESRAQLRELSAYL-QSV 144 Query: 358 LMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATA-QSIMADFSQALNDAYRQL 416 ER I+RELHD L Q L+ LR+ L+ ++ D A + + Q + + Sbjct: 145 REAERTRISRELHDELGQSLTALRLGLSFIEAQQGPDAGDACRKHLQMLKQIADSTVDAV 204 Query: 417 RELLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIR 475 + + R L + L +A+ + ++ + L + P L A++ + +I + Sbjct: 205 QRIAADLRPPLLDELGLTAAIEWLAESFSERGGIACELALQ-PVGELSAELSTAVFRIAQ 263 Query: 476 EAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEP-EGHYGLNIMRERAER 534 EA+ NA +H A + V A G + + DNG GI + GL MRERA Sbjct: 264 EALTNACRHGRADRVRVELS-AAGGTLRLVVADNGRGIDASRAGHRRSLGLLGMRERALM 322 Query: 535 LGGTLTFSQPSGGGTLVSISFR 556 LGG L + GGGT V Sbjct: 323 LGGKLAVTSEKGGGTRVEAQIP 344 >UniRef50_B9XNW0 Multi-sensor signal transduction histidine kinase n=1 Tax=bacterium Ellin514 RepID=B9XNW0_9BACT Length = 1382 Score = 234 bits (597), Expect = 8e-60, Method: Composition-based stats. Identities = 56/266 (21%), Positives = 111/266 (41%), Gaps = 8/266 (3%) Query: 300 PELPMQILPVTMQETVYGELHWQ----NSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQ 355 + +P+ + V G + + S L +++ + + + ++ Sbjct: 1116 GVRTVLFVPMLIAGHVEGIVSIRFTRKRSFRREEIELPQALAHQAMLAIQLMRLSQQSRE 1175 Query: 356 LLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDN-ATAQSIMADFSQALNDAYR 414 +M ER +AR++HD+LAQ + + +QL + + + ++ R Sbjct: 1176 AAVMAERNRMARDIHDTLAQGFTGVIVQLEAAADAGSQGLVVEVAEHLNRAGDLARESLR 1235 Query: 415 QLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQI 473 + R + R L+ +L AL ++ + T+ + D + + ++ + +LL+I Sbjct: 1236 EARRSVRALRPLALEGKNLFKALEGLIQKMTAGTTMRAKFDLQGEPCVIPSEWEDNLLRI 1295 Query: 474 IREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAE 533 +E NA++HA ASE V + + ++DNG G +GL +RER E Sbjct: 1296 GQEVFTNALRHARASEFKARLVFSAQA-LQLELQDNGQGFDP-ARQHDGFGLLGIRERVE 1353 Query: 534 RLGGTLTFSQPSGGGTLVSISFRSAE 559 + G L+ +G GT V I E Sbjct: 1354 SMRGQLSIQSTNGEGTAVLIILPLTE 1379 >UniRef50_Q2LRG0 Signal transduction histidine kinase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LRG0_SYNAS Length = 519 Score = 234 bits (596), Expect = 9e-60, Method: Composition-based stats. Identities = 52/238 (21%), Positives = 91/238 (38%), Gaps = 4/238 (1%) Query: 328 SSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLL 387 L + Q + EER IARE+HD L Q L+ ++ L+ L Sbjct: 284 EDITERKKAEKELEESREKMRNLSIHLQSVREEERTRIAREIHDELGQSLTAFKMDLSWL 343 Query: 388 KRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTL-QQADLPSALREMLDTLQNQ 446 + + + + S ++ + + R L L +A+ + Sbjct: 344 GKRMTSEK-LLHDKIKAMSGLVDRTIESVHRISADLRPGLLDDLGLVAAMEWQAKEFSAR 402 Query: 447 TSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYI 506 + D + LD + + +I +E + N +H+NA+++ V T D + + Sbjct: 403 SGIACEADLEAEDVPLDKEPATAVFRIFQETLTNVARHSNATKVFVRLETKGD-KVILEV 461 Query: 507 RDNGIGIGEPK-EPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEES 563 DNG GI + + +G+ MRERA GG + GT V +S GE+ Sbjct: 462 TDNGRGITQKQINDPKSFGIMGMRERALLWGGDVQVIGSRSRGTTVKVSIPLKSGEKE 519 >UniRef50_A4XZI6 Multi-sensor signal transduction histidine kinase n=17 Tax=Pseudomonas RepID=A4XZI6_PSEMY Length = 801 Score = 234 bits (596), Expect = 9e-60, Method: Composition-based stats. Identities = 62/285 (21%), Positives = 112/285 (39%), Gaps = 4/285 (1%) Query: 277 NEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSV 336 N LE W+ E+ + T + G + W +E L + Sbjct: 517 NSQTLALEGESDWYWQGRILTAEQEVLWADIRTTARPLGGGRVVWDGILWDITENKLAEL 576 Query: 337 SSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNA 396 + L + + + EE+A IARE+HD L QVL+ L+++ + + + Sbjct: 577 A--LADSRARLRELSAHLESVREEEKARIAREVHDELGQVLTVLKLETAMCELACAGQVP 634 Query: 397 TAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCR 456 +A + + ++ +R++ T R + A + SA+ + + +T ++ Sbjct: 635 ELDERLASMKRLIAQLFQLVRDVATALRPPILDAGIASAIEWQVRRFEERTQIPCLVEVP 694 Query: 457 LPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEP 516 L + L +I++EA+ N M+HA A + V +G + + D+G G Sbjct: 695 EHLPRLPDAQAIGLFRILQEALTNVMRHAGAHSVVVRLWQE-EGGLCLSVSDDGKGFDAA 753 Query: 517 KEPEG-HYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEG 560 G +GL M+ER LGG L G GT + E Sbjct: 754 MRKPGQSFGLVGMQERMLMLGGQLQIDSRPGEGTTLYARITLDEE 798 >UniRef50_UPI0001746019 hypothetical protein VspiD_01665 n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001746019 Length = 872 Score = 234 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 60/275 (21%), Positives = 114/275 (41%), Gaps = 8/275 (2%) Query: 298 PNPELPMQILPVTMQETVYGELHWQNSHVS----SSEPLLNSVSSMLGRGLYFNQAQKHF 353 ++P+ + V G L + + L +++ + L + + Sbjct: 600 DQGVQSTLVVPMLLAGRVTGFLSIRFTRPPHFQTEEIELAQALAHQVILALQLIRLTQEG 659 Query: 354 QQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDN-ATAQSIMADFSQALNDA 412 +L ++ ER +ARELHD+LAQ ++ + +QL L + + + Sbjct: 660 HRLAVLAERNRMARELHDTLAQGITAVIMQLELAEDASARGLVEAVDPHVKRARDLARQT 719 Query: 413 YRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLL 471 R+ R + R L+ DLP AL + + + + + R + + + ++L Sbjct: 720 LREARRSVRAMRPQALKAQDLPQALGALFKQMTEGSGMQAEVILRGIPCHIPTRCEENIL 779 Query: 472 QIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRER 531 +I +E + NA++HA AS + AP +++ DNG G + +GL +RER Sbjct: 780 RIGQEVLTNALRHAGASRFTGRLIFAPTAIL-LHLHDNGRGFDP-QGQHDGFGLTGIRER 837 Query: 532 AERLGGTLTFSQPSGGGTLVSISFRSAEGEESQLM 566 E +GG L G GT + I + E + + Sbjct: 838 VEGMGGRLCLRSRPGQGTSIRIRLGRLKAESGKFV 872 >UniRef50_Q47G83 PAS n=1 Tax=Dechloromonas aromatica RCB RepID=Q47G83_DECAR Length = 683 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 65/318 (20%), Positives = 127/318 (39%), Gaps = 16/318 (5%) Query: 257 LNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETVY 316 + + + L + A L + E W+ P+ + I+ + + Sbjct: 371 IRAADVLDQNIEQFLLRSQPKIVASNLLGYLREAWQ----SPSDLALLGIVSLVRDDQDI 426 Query: 317 GELHWQNSHVSSSEPLLNS----VSSMLGRGLYFNQAQKHFQQL------LLMEERATIA 366 +S E L+ + +S L ++ + Q+L + +ER I+ Sbjct: 427 PVELSLSSTTVRGERLVTAIFRDLSERQRTELELLKSNRQLQELTASLESVREQERLRIS 486 Query: 367 RELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRL- 425 RELHD L Q L+ LR++++ L + + + + ++ + +R + + R Sbjct: 487 RELHDELGQALTGLRMEISWLGGRLLTTQPELEQKVVSIKKLIDGTIKSVRRISSELRPL 546 Query: 426 TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHA 485 L +A +D +T+ K+TL+ + L ++++E++ N +HA Sbjct: 547 VLDDLGFAAAANWYVDQFATRTNLKVTLELPNDDPENGGTVATTLFRVLQESLTNVARHA 606 Query: 486 NASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPS 545 A + + + A D + IRD+G G + G GL MRER + LGG+ + Sbjct: 607 GARNVDIRLLQANDQW-RLEIRDDGQGFDQSSAKMGGIGLIGMRERVQALGGSFELTAAP 665 Query: 546 GGGTLVSISFRSAEGEES 563 G GTL+ I + Sbjct: 666 GQGTLIEICIPVESARKG 683 >UniRef50_B9L060 Putative two component system histidine kinase n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L060_THERP Length = 473 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 95/417 (22%), Positives = 159/417 (38%), Gaps = 26/417 (6%) Query: 159 IGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQM 218 I TL + + P+ +L + + + +E G+ + Sbjct: 49 IASGTLAVLGVVVFADWIFRPIGEL--------YRRLLMQHAELAALHEAGVAITADLDL 100 Query: 219 SSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRH---ILQIVR 275 + L ++ + L + + S T++ + + ++R Sbjct: 101 ALVLQRVIDEARRLAGARYGLLIVLDDQGQRTLFTSGYPRTARCEQSTMGEHGILEAVLR 160 Query: 276 DNEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETVYGELHWQ-----NSHVSSSE 330 D+ +L+ R + +P+ QE V G L+ Sbjct: 161 DDRPLNIEDLDRYPGTRHYPEGHPTMRSLLGVPIRSQEGVLGGLYLADREDGQPFDEHDR 220 Query: 331 PLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRS 390 L ++ + + + L + EER IARE+HDSLAQVL Y+ +++ L+ Sbjct: 221 SRLERFATQAALAIANARLHRRLMSLAVHEERERIAREMHDSLAQVLGYVITKVSALREL 280 Query: 391 I--PEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQ-QADLPSALREMLDTLQNQT 447 + P+ A A+ + +A DAY +RE + R L L ALR ++ Q+Q+ Sbjct: 281 LRQPDRLAEAERHLEQLERAARDAYADVREAILGLRTGLAPNRSLVDALRSYVERWQDQS 340 Query: 448 SAKLTLDCRLPT---LALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTV 504 L L ++ LL+I++EA+ N KHA A+E+ V DG V Sbjct: 341 GVNARLIVEPSDDSLRGLQPMAELQLLRIVQEALTNVRKHARATEVTVQLARL-DGTVCV 399 Query: 505 YIRDNGIGIGEPKEPEG---HYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSA 558 + DNGIG G +GL MRERAE +GG L + G GT V Sbjct: 400 RVADNGIGFDPGALERGQFPRFGLATMRERAEAVGGRLRVTSLPGQGTTVEAVLPVG 456 >UniRef50_Q1IWU8 Multi-sensor signal transduction histidine kinase n=3 Tax=Deinococcus RepID=Q1IWU8_DEIGD Length = 574 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 76/360 (21%), Positives = 146/360 (40%), Gaps = 27/360 (7%) Query: 213 KTFNQMSSELHKLYRSLEASVEE--KTRDLHEAKRRLEVLY--QCSQALNTSQIDVHCFR 268 + M L ++ R++ V + L + L + Y ++ + Sbjct: 228 RAERNMRRLLARVTRNMAERVRAGARAAYLRDQDGLLRLEYAQHAGGESSSGALAPAFVE 287 Query: 269 HILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETVYGELHWQNSHVSS 328 + + A++ V R + G P+ E + G L ++ + Sbjct: 288 RVAEAGMPLVASQQEAAEVFPEARSALG----------FPMRDDEGLVGVLVLGDARPEA 337 Query: 329 SE----PLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQL 384 + PLL ++ + +A + ++L + +ERA IARE+HD +AQ L++ ++L Sbjct: 338 FDGVRLPLLALLAGQATLAVRNARAYLYSEELAISDERARIAREIHDGVAQSLAFCALKL 397 Query: 385 TLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDTL 443 L+ R + D A++ + + L + R++R + R L++ L +R ++ Sbjct: 398 DLVARQLHSDPEKAEAEVKAATGLLREQIREVRRSIFALRPIDLERYGLLETVRRYVEDF 457 Query: 444 QNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHT 503 Q + + L+ + L + + +I++E++ N KHA A E+ V+ T Sbjct: 458 GQQNNLRTVLNVTGD-IHLAPGDEAVVFRILQESLNNVAKHARAREVVVTL--HGGERVT 514 Query: 504 VYIRDNGIGIGEPK-----EPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSA 558 + ++D+G G + G GL MRER E GG G GTLV A Sbjct: 515 LRVQDDGQGFDPEQISGRVSSAGGLGLMQMRERVESRGGNYRVLSSPGHGTLVEAEVPQA 574 >UniRef50_O32198 Sensor histidine kinase liaS n=5 Tax=Bacillus RepID=LIAS_BACSU Length = 360 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 54/231 (23%), Positives = 106/231 (45%), Gaps = 4/231 (1%) Query: 335 SVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPED 394 V+S+ + Q ++ ++ EER +AR+LHD+++Q L + + + + + + Sbjct: 124 QVASLQKLSNERAEWQAQMKKSVISEERQRLARDLHDAVSQQLFAISMMTSAVLEHVKDA 183 Query: 395 NATAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTL 453 + + +A ++R LL R TL+ L L E+LD + + + + Sbjct: 184 DDKTVKRIRMVEHMAGEAQNEMRALLLHLRPVTLEGKGLKEGLTELLDEFRKKQ--PIDI 241 Query: 454 DCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGI 513 + + A+ ++ HL +I++EA+ N +H+ AS++ V + + + DNG G Sbjct: 242 EWDIQDTAISKGVEDHLFRIVQEALSNVFRHSKASKVTVILG-IKNSQLRLKVIDNGKGF 300 Query: 514 GEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEESQ 564 + YGLN M+ERA +GG G GT + + E+ + Sbjct: 301 KMDQVKASSYGLNSMKERASEIGGVAEVISVEGKGTQIEVKVPIFPEEKGE 351 Score = 45.3 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 24/153 (15%), Positives = 57/153 (37%), Gaps = 5/153 (3%) Query: 162 FTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSE 221 T+ F + +++ ++ L+ + E+G F +E+GL A N+M+ Sbjct: 62 VTVGFASGYMYGNRLKTRIDTLIESILTFENGNFAYRIPPL-GDDEIGLAADQLNEMAKR 120 Query: 222 LHKLYRSLEASVEEKTRDLHEAKRRL--EVLYQCSQALN--TSQIDVHCFRHILQIVRDN 277 + SL+ E+ + K+ + E + ++ L+ SQ ++ Sbjct: 121 VELQVASLQKLSNERAEWQAQMKKSVISEERQRLARDLHDAVSQQLFAISMMTSAVLEHV 180 Query: 278 EAAEYLELNVGENWRISEGQPNPELPMQILPVT 310 + A+ + G+ E+ +L + Sbjct: 181 KDADDKTVKRIRMVEHMAGEAQNEMRALLLHLR 213 >UniRef50_C4DRB4 Signal transduction histidine kinase, COG4585 n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DRB4_9ACTO Length = 422 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 60/246 (24%), Positives = 105/246 (42%), Gaps = 8/246 (3%) Query: 313 ETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDS 372 + + + L +++ + + +Q + ERA +AR++HD+ Sbjct: 179 GAMMRTVEREAIRRREVNARLVALAD--ENAALQARLVEQARQAGVTAERARLARDMHDT 236 Query: 373 LAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTL-QQAD 431 +AQ L+ + QL + D + D+ ++R + R L AD Sbjct: 237 VAQGLAGIVTQLETAE----ADPDDTARRLRIARDLARDSLVEVRRSVAALRPALLDDAD 292 Query: 432 LPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIA 491 L AL +D +++ T + LDA + +L++ +EA+ N +HA AS + Sbjct: 293 LAEALAREVDAWRHRNDIAATFTVTGTPVPLDAAVDEAVLRVAQEALSNTARHAKASRLG 352 Query: 492 VSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLV 551 V+ D + IRD+G G EP +GL MR+R E+L G++ G GT V Sbjct: 353 VTLSYMED-MLVLDIRDDGEGFAVDAEPRQGFGLTAMRQRVEQLDGSVHIESKPGAGTAV 411 Query: 552 SISFRS 557 S+S Sbjct: 412 SVSLPL 417 >UniRef50_D2B7Q9 Histidine kinase n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2B7Q9_STRRD Length = 412 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 59/254 (23%), Positives = 101/254 (39%), Gaps = 5/254 (1%) Query: 306 ILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATI 365 + + E +S + LL +S+ Q ++ +++ER + Sbjct: 157 AWVLRLAEQEEERREQALEELSRTNRLLE--ASLAENAGLHAQLLAQAREAGVLDERQRM 214 Query: 366 ARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRL 425 ARE+HD+LAQ L+ + QL + + E A + ++ + R + R Sbjct: 215 AREIHDTLAQGLTGIIAQLQAAE-QMHEVPAPWRRPFGAVKNLARESLAEARRSVDALRP 273 Query: 426 -TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKH 484 LQ A L AL + D + + + + + LL+ +EA+ N KH Sbjct: 274 EPLQTARLSDALAGVADRWSKLHGLPVQVTTTGTARPMTPEAEFALLRTAQEALANVAKH 333 Query: 485 ANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQP 544 A AS + V+ + + +RD+G G G +GL IMR+R E L G+L Sbjct: 334 AGASRVGVTLSYL-EQEVALDVRDDGKGFDLASLEAGGFGLTIMRQRVEGLSGSLRVESE 392 Query: 545 SGGGTLVSISFRSA 558 G G +S Sbjct: 393 PGAGAGISACVPCP 406 >UniRef50_Q67QY8 Two-component sensor histidine kinase n=1 Tax=Symbiobacterium thermophilum RepID=Q67QY8_SYMTH Length = 346 Score = 232 bits (591), Expect = 3e-59, Method: Composition-based stats. Identities = 63/278 (22%), Positives = 102/278 (36%), Gaps = 12/278 (4%) Query: 298 PNPELPMQILPVTMQETVYGELHWQNSHVSSSE---PLLNSVSSMLGRGLYFNQAQKHFQ 354 P+ L T+ G+ + V + + ML R QA Sbjct: 70 RVAFRPLFTLHATLDRVRRGDFSARVPMVPGDPDIARVSEMANLMLDRLAEHRQAVAAQI 129 Query: 355 QLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSI--PEDNATAQSIMADFSQALNDA 412 EER IARELHD AQ L+ + + L ++R + + + Sbjct: 130 LRAQEEERKRIARELHDETAQSLTSIVVNLEAIERQAVGSGVDEALCERLHLTKEVAQRT 189 Query: 413 YRQLRELLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLL 471 + R L+ R + L L ALR ++ + T L +++ L Sbjct: 190 LDETRRLMMDLRPSVLDDLGLVPALRWFINHRVLPAGLEADFQVSGLTERLPEELETALF 249 Query: 472 QIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGE-----PKEPEGHYGLN 526 +I++EA+ N +KHA A + V G T + D+G G + GL Sbjct: 250 RIMQEAITNVVKHAKAKTVLVRLHRE-HGEITGLVVDDGQGFHVVHTVGQPVRDRGLGLF 308 Query: 527 IMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEESQ 564 M+ERA +GG + G GT V ++ G + + Sbjct: 309 GMQERAALVGGKVVVESAPGRGTTVRVTVPDRRGGDVR 346 Score = 48.0 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 22/205 (10%), Positives = 61/205 (29%), Gaps = 16/205 (7%) Query: 157 GGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFN 216 + + PL L R+ G F + ++ +++ N Sbjct: 53 LIAVGLVVSLGVNYALLRVAFRPLFTLHATLDRVRRGDFSARVPMVPGDPDIARVSEMAN 112 Query: 217 QMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRH------- 269 M L + +++ A + + ++ + E+ + +Q+L + +++ Sbjct: 113 LMLDRLAEHRQAVAAQI-LRAQEEERKRIARELHDETAQSLTSIVVNLEAIERQAVGSGV 171 Query: 270 ---ILQIVRDNEAAEYLELNVGENWRI----SEGQPNPELPMQILPVTMQETVYGELHWQ 322 + + + + L+ + S +P + + G L Sbjct: 172 DEALCERLHLTKEVAQRTLDETRRLMMDLRPSVLDDLGLVPALRWFINHRVLPAG-LEAD 230 Query: 323 NSHVSSSEPLLNSVSSMLGRGLYFN 347 +E L + + L R + Sbjct: 231 FQVSGLTERLPEELETALFRIMQEA 255 >UniRef50_C6E3E0 PAS/PAC sensor signal transduction histidine kinase n=1 Tax=Geobacter sp. M21 RepID=C6E3E0_GEOSM Length = 485 Score = 231 bits (590), Expect = 4e-59, Method: Composition-based stats. Identities = 73/388 (18%), Positives = 146/388 (37%), Gaps = 30/388 (7%) Query: 183 LVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTR--DL 240 L ++RIE + + LL + + + LH L ++E V T + Sbjct: 111 LEVEARRIEVDGRPAVLGTFLDHTDCKLLGQAMHASQATLHMLLDAMEDRVYVVTDKFHI 170 Query: 241 HEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNP 300 A R++ Q + I + + + + + E Sbjct: 171 VYANRKM-------QEGMSGDITDELCYRVCRGLSE----------RCSDCSSDEVFATG 213 Query: 301 ELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGR---GLYFNQAQKHFQQLL 357 + + + Y + P +V+ + +A H Sbjct: 214 KPVYKEFFNERTQRWYSVIELAVRMPGIERPTKLAVARDITVRKEAEEKVRALSHRLFSA 273 Query: 358 LMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLR 417 +ER ++RELHD L Q L+ ++I + L +P+ S + S+ L + +R Sbjct: 274 QEDERRHLSRELHDDLGQRLNAVKIGVDTLACDLPQLPPDFLSRVGYLSEILQSTIQSVR 333 Query: 418 ELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRL-PTLALDAQMQVHLLQIIR 475 ++ + R +L++ L A+ L + K+ + + LD + +++L ++ + Sbjct: 334 DICSGLRPSSLERRGLVQAITSDCAELASVHGLKIDVKSSGMKKVLLDNEAEINLYRVFQ 393 Query: 476 EAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKE-----PEGHYGLNIMRE 530 E++ N +KHA AS ++VS + A + I D+G G E GL + E Sbjct: 394 ESLHNVVKHAQASRVSVSLI-ASHPIVRMRIEDDGKGFAPCARVDGGGGERGLGLVSIAE 452 Query: 531 RAERLGGTLTFSQPSGGGTLVSISFRSA 558 R + +GG+L G GT + + ++ Sbjct: 453 RVDLMGGSLDVVSRPGVGTRIVVEIPAS 480 >UniRef50_C1CWD4 Putative histidine kinase, classic; putative membrane protein n=1 Tax=Deinococcus deserti VCD115 RepID=C1CWD4_DEIDV Length = 575 Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats. Identities = 67/259 (25%), Positives = 114/259 (44%), Gaps = 7/259 (2%) Query: 307 LPVTMQETVYGELHW----QNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEER 362 LP + G L + L S++ G L+ +Q + +ER Sbjct: 309 LPPSAGTLDGGTLRAVYQGGTRPGAEELAFLLSIADHAGTALHASQLIERAGARAGEQER 368 Query: 363 ATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTT 422 A +ARELHDS+AQ L + + + ++ D A+ + + +++ LL + Sbjct: 369 ARLARELHDSVAQALYGITLGAKTARATLDRDPGRARESLDYTIRLAEGGVSEMKALLFS 428 Query: 423 FRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNA 481 R L++ L +AL + L+ + ++ + R L Q ++ +EA+ N Sbjct: 429 LRPDALEEGGLIAALTQHAHALEARHGLRVHAELRAEP-HLTPDAQAAAYRVAQEALHNV 487 Query: 482 MKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTF 541 +KHA A+++ + CV G TV +RD+G G + G G MRERA GGTL Sbjct: 488 VKHARATQVWL-CVHESLGVVTVSVRDDGRGFDPASQGRGTLGQRSMRERAAGAGGTLDV 546 Query: 542 SQPSGGGTLVSISFRSAEG 560 G GT+V++ +A Sbjct: 547 QSAPGEGTIVTLRIPAASA 565 >UniRef50_Q1ASU9 GAF sensor signal transduction histidine kinase n=2 Tax=Bacteria RepID=Q1ASU9_RUBXD Length = 391 Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats. Identities = 66/287 (22%), Positives = 116/287 (40%), Gaps = 7/287 (2%) Query: 278 EAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETVYGELHWQN----SHVSSSEPLL 333 E A + + + +P+ ET G ++ + S LL Sbjct: 105 EGAANVNVLACSRLSGLVDGTDGLRYHASIPLYSGETKLGVMNVASHDWRSLSREDLRLL 164 Query: 334 NSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPE 393 ++ +L + + L EER +ARE+HD++AQ L+ ++L + + Sbjct: 165 YTIGDLLSIAVERARLFARSALLGASEERNRLAREIHDTIAQGLAATALRLETAEALLEA 224 Query: 394 D-NATAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKL 451 A A+ ++ + R + R L+ L AL + ++ + ++ + Sbjct: 225 GSPAEARKEISRALALTRTNLEEARRSVLDLRAAPLEGRSLAEALALLAESQERESGIPV 284 Query: 452 TLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGI 511 L +++ L +I +EA+ NA +HA AS I V P G + + D+G Sbjct: 285 RFRAVNGARPLPPRVETGLYRICQEALNNAARHAEASRIEVLLTLTP-GEARLRVEDDGR 343 Query: 512 GIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSA 558 G+ P G +G+ MRERA LGG L S+ GGG V + Sbjct: 344 GLDPSPAPPGRHGILGMRERARLLGGRLEISEAPGGGARVEAAVPLE 390 >UniRef50_B0C7C8 GAF domain protein n=1 Tax=Acaryochloris marina MBIC11017 RepID=B0C7C8_ACAM1 Length = 1980 Score = 231 bits (589), Expect = 6e-59, Method: Composition-based stats. Identities = 57/276 (20%), Positives = 117/276 (42%), Gaps = 11/276 (3%) Query: 290 NWRISEGQPNPELPMQILPVTMQETVYGELHW----QNSHVSSSEPLLNSVSSMLGRGLY 345 W S G + + + G + + Q + + ++++ ++ Sbjct: 1695 EWHTSRGHQSATCAC----MKIGNQPIGFIGFAFCDQTVLSTEQLEFVQALTNQATLAIH 1750 Query: 346 FNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADF 405 + + + L +ER +ARE+HD+LAQ + + +QL K + + TA+S + Sbjct: 1751 LTRLAEQARTNALTDERNRLAREIHDTLAQAFTGISLQLEAAKNILSQQPETAKSYLDQA 1810 Query: 406 SQALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDA 464 + + R + R L++ L AL++ L + TS + + + L+ Sbjct: 1811 RDLTHQGLSEARRSVHALRSEALERETLVKALQKNLTQMTLNTSLQTEFQIQGTPILLEE 1870 Query: 465 QMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPE-GHY 523 +Q++LL+I +EA+ N ++HA A + V+ D + + D+G+G + + Sbjct: 1871 GLQLNLLRIGQEAITNVLRHAQAKTLTVTLAFT-DQEVGLCVTDDGVGFEPQDVADITGF 1929 Query: 524 GLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAE 559 GL +RER R G + + G GT + + Sbjct: 1930 GLVGIRERTVRYQGQVKITSHPGEGTTIEVKMPVQP 1965 >UniRef50_Q81FX4 Two-component sensor protein yvqE n=44 Tax=Bacillus cereus group RepID=Q81FX4_BACCR Length = 351 Score = 230 bits (588), Expect = 8e-59, Method: Composition-based stats. Identities = 55/238 (23%), Positives = 100/238 (42%), Gaps = 4/238 (1%) Query: 321 WQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYL 380 + + + L + +Q + +ER +ARELHDS++Q L + Sbjct: 109 VERKVIVLARRLEEQAGLFQKVTNERAHWNEEMRQEAISQERHRLARELHDSVSQQLFAM 168 Query: 381 RIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALREM 439 + ++ + I E + + + +A ++R LL R L+ L + E+ Sbjct: 169 SMMMSAINEQITEFPDVTKKQLQLVENMVVNAQSEMRALLLHLRPVQLEGKKLTEGIEEL 228 Query: 440 LDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPD 499 L L + K+ + + + L ++ HL +I++EA+ N ++HA A + V D Sbjct: 229 LTELSRKQHMKI--EWLIEPIELKKGVEDHLFRIVQEALSNTLRHAKAKKTEVRL-RKID 285 Query: 500 GNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRS 557 + I D+G+G G YGL M+ER +GGTL GT + + Sbjct: 286 QYAILKIIDDGVGFEVGVNKAGSYGLRSMQERVHEIGGTLKVLSFPAKGTQIEVKVPI 343 >UniRef50_C6QH09 Histidine kinase n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QH09_9RHIZ Length = 619 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 116/590 (19%), Positives = 215/590 (36%), Gaps = 63/590 (10%) Query: 4 KRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLR-MQSYRLGYDLQS 62 + P+ A +++ AI A LR + + + Q Sbjct: 47 RYPLYFRTAGLVTSAAFAALII----FTASWYLSNYGAAIGDA--LRKLHAAEISLVAQK 100 Query: 63 GSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPWYQ 122 + + + S V + + + + E + + D Sbjct: 101 PEGAKDQNVSPVADLIGSDVFDDQTILRESNVNLD----VLKDGQEGKSEIVSRDAIELL 156 Query: 123 ANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQ 182 L LQ E + V + L + + R +V +++ Sbjct: 157 QQAG----------LNLQRNLEARRTQVAFLQLLSFCVLLFCLARLSVGSRRVLVDRVDR 206 Query: 183 LVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVE-EKTRDLH 241 + A + +E+ L ++ +++ + E+ + Sbjct: 207 IAGAVSAGG-----AYSQGRARRDEIARLEDRVGRLLTDIANSGAGTDTRTSLERMARIQ 261 Query: 242 EAKRR---------------LEVLYQCSQALNTS------QIDVHCFRHILQIVRDNEAA 280 + ++LY + L+ D F + + E A Sbjct: 262 DYLSNAMSVMLRHPFGDGMLRKILYALERTLDLQNTAIVFSEDAAVFHSGRCLFSNREPA 321 Query: 281 EYLELNVGENWRISEGQPNPELPMQILPVTMQ---ETVYGELHWQNSHVSSSEPL----- 332 + E + G E + + GE +S L Sbjct: 322 ALSKQFEAEISQAGAGAIVEEHAEDLRTRKVGLGFVDATGETSVLLVELSGDRTLEAVEI 381 Query: 333 --LNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLK-- 388 L +S+L + + +++ ++EERA IARELHDSLAQ LS+++IQL L+ Sbjct: 382 KTLRITASLLSMAAKLDGHDQEARRIAVLEERAAIARELHDSLAQSLSFMKIQLARLQSY 441 Query: 389 --RSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQ 446 E ++I ++ L++AYR+LRELL TFR+ + L A+ ++ + Sbjct: 442 QNNVTSESREQTKAITSELRHGLDNAYRELRELLATFRVHMDVRGLDFAIESAIEEFSQR 501 Query: 447 TSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYI 506 + ++LD RL AL + H+L ++REA+ N ++HA A+ + ++ +G TV I Sbjct: 502 SGLPISLDNRLAGAALTVNEEFHVLHVVREALSNILRHARATNVWITMDVRRNGEVTVTI 561 Query: 507 RDNGIGIGEPKEPE-GHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 D+GIG + E H+G IM+ERA LGG + + GT V+++F Sbjct: 562 DDDGIGYRPAETKETSHHGQTIMKERAFSLGGAIDIAPRPEAGTRVTLTF 611 >UniRef50_Q7N5B4 Similar to nitrate/nitrite sensor protein NarX n=2 Tax=Photorhabdus RepID=Q7N5B4_PHOLL Length = 410 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 91/340 (26%), Positives = 146/340 (42%), Gaps = 11/340 (3%) Query: 226 YRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLEL 285 A + + L + L+ L Q L ++ + I + ++ Sbjct: 69 KEWQHARYKAEINALKQKNSYLDFLCQSHFKLQNCKLLPEKLQEIFSHLNRLIPFCEAKI 128 Query: 286 NVGENWRISEGQPNPELPMQILPVTMQETV------YGELHWQ----NSHVSSSEPLLNS 335 + + + + P +P+ M+ + YG L + + + L+ Sbjct: 129 IFYPSQQEYFFRNPHQCPYFDMPLIMRWNLDDNIDSYGTLWIKTHRNSDLTPDEKSLVQD 188 Query: 336 VSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDN 395 V +++ L + Q +L ER I+RELHDS+AQ LS+L+IQ+ L Sbjct: 189 VVTLMTNKLLRENQIQCQHQSMLAAERTAISRELHDSIAQSLSFLKIQVNCLYIGSDNLP 248 Query: 396 ATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDC 455 + + + LN AYRQLRELL TFR Q +L +L+ ++ ++ + + Sbjct: 249 KQSLTSLNMIKDELNIAYRQLRELLATFRNEQPQCNLQESLQTLISEFNHRLGFNIEFNY 308 Query: 456 RLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGE 515 RL + HL+QIIRE + N KHANA+ I++ D TV + DNG GI Sbjct: 309 RLTHQHIPDSYSKHLIQIIRECLNNCYKHANANWISIRIYPIDDKIITV-VSDNGQGINL 367 Query: 516 PKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 + +GL IM++R LGG L GGT V I F Sbjct: 368 DSANKNKFGLAIMQDRVSILGGQLQIKNRKHGGTEVEIQF 407 >UniRef50_B4D830 Integral membrane sensor signal transduction histidine kinase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D830_9BACT Length = 725 Score = 230 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 69/248 (27%), Positives = 117/248 (47%), Gaps = 5/248 (2%) Query: 318 ELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQA--QKHFQQLLLMEERATIARELHDSLAQ 375 L W ++ + +++L R + ++ ++ +ER IARELHD++ Q Sbjct: 467 RLFWALGFIAGLALMAIVWAALLRRRVTEQTKTIATQIERAVIKDERQRIARELHDTIEQ 526 Query: 376 VLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPS 434 L+ L +QL ++ + A + + + L + R + R L+Q LP Sbjct: 527 ELAGLSVQLRNARQRLLNMPEQAGTAIELAERMLRHCREEARTSIRDLRSVALEQRGLPG 586 Query: 435 ALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSC 494 AL E L L + A+L+ + R +L +++H+L+I ++AV NA++HA EI V Sbjct: 587 ALEETLAPLVEGSGARLSFEARGRARSLAGPVEIHILRIAQQAVANAVQHAAPKEIRVHL 646 Query: 495 VTAPDGNHTVYIRDNGIGIGEPK-EPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSI 553 D T+ +RD+G G P GH+G+ +RERA ++ TLT G GT + Sbjct: 647 EYLADA-VTLEVRDDGRGFDPAAPAPRGHFGILGIRERANKIHATLTVDSAPGAGTTIRA 705 Query: 554 SFRSAEGE 561 A E Sbjct: 706 VVPIAAVE 713 >UniRef50_B3U4S0 Response regulator receiver n=1 Tax=Candidatus Nitrospira defluvii RepID=B3U4S0_9BACT Length = 998 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 62/261 (23%), Positives = 103/261 (39%), Gaps = 8/261 (3%) Query: 302 LPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEE 361 + P+ + G + L + + + EE Sbjct: 744 VEYSSFPIIEDNQIIGAVVVFLDITERKRA-----EQQLTLSHDQLRKLTARLESVREEE 798 Query: 362 RATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLT 421 R IARE+HD L Q L+ ++++L LL I E + + + S ++ + ++ + T Sbjct: 799 RILIAREIHDELGQALTGVKLELCLLHDQIAEVSPMMRKKLESISTLVDGTIQSVQRIAT 858 Query: 422 TFRLT-LQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLN 480 R L Q L A+ Q +T + TLD L + L + +I +E + N Sbjct: 859 ELRPVVLDQLGLIPAIEWQAHEFQARTGIQCTLDVYLRAVTLSHAGSTAMFRIFQEILTN 918 Query: 481 AMKHANASEIAVSCVTAPDGNHTVYIRDNGIGI-GEPKEPEGHYGLNIMRERAERLGGTL 539 +HA AS + ++ G+ + +RDNG G+ GL MRERA LGG Sbjct: 919 VARHAQASVVHITL-QEQAGSLVLDVRDNGRGVTDAELADPHSLGLVGMRERALLLGGET 977 Query: 540 TFSQPSGGGTLVSISFRSAEG 560 F+ G GT V + + Sbjct: 978 IFTGSPGTGTAVRVRIPLDQP 998 >UniRef50_C1YIX9 Signal transduction histidine kinase, COG4585 n=1 Tax=Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 RepID=C1YIX9_NOCDA Length = 412 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 60/248 (24%), Positives = 108/248 (43%), Gaps = 9/248 (3%) Query: 317 GELHWQNSHVSSSEPLLNSVSSMLGRGLYFN----QAQKHFQQLLLMEERATIARELHDS 372 G L + +V+ + Q ++ +++ER +ARE+HD+ Sbjct: 165 GGLVIASKAAEQHRERRVTVARLEAALEENAGLHAQLLTQAREAGVLDERQRMAREIHDT 224 Query: 373 LAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQAD 431 LAQ L+ + Q+ +R D A+ ++ + R + R L ++ Sbjct: 225 LAQGLAGIVTQIQAAQRVWE-DPGAARPHADRALGLARESLAEARRSVQALRPGQLAESQ 283 Query: 432 LPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIA 491 LP AL E+ + + LD +AL ++V L ++ +EA+ N +HA+AS + Sbjct: 284 LPEALGELTRRWAEEHGVRPDLDVTGERVALSPAIEVVLFRVAQEALTNVARHADASRVG 343 Query: 492 VSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLV 551 V+ + D + +RD+G GI + +GL+ MR+R +GG L G GT V Sbjct: 344 VTLSYSDD-VVLLDVRDDGRGI--TGHNQHGFGLSSMRQRVRGIGGALEIESGEGEGTAV 400 Query: 552 SISFRSAE 559 S + + Sbjct: 401 SATVPAIP 408 >UniRef50_B8HT67 GAF sensor signal transduction histidine kinase n=1 Tax=Cyanothece sp. PCC 7425 RepID=B8HT67_CYAP4 Length = 652 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 65/265 (24%), Positives = 116/265 (43%), Gaps = 9/265 (3%) Query: 298 PNPELPMQILPVTMQETVYGELHWQNS----HVSSSEPLLNSVSSMLGRGLYFNQAQKHF 353 + +P+ + E G L S L + + Y NQ Sbjct: 385 QRGVTRLLNIPLWLNEKTIGALDIWLPSHRCFNRSQIDLAYTFGQQITLASYLNQMFTEV 444 Query: 354 QQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAY 413 QQ +L+EER IA ++HD+LAQ + + +QL + K I ++ T + I+ SQ + Sbjct: 445 QQTILLEERNRIASDIHDTLAQAFTGISLQLEVAKPLIQQEPQTVEQILQHISQLAKNGL 504 Query: 414 RQLRELLTTF-RLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQ 472 + R + + A+L L + ++ + T + ++ + + ++LL+ Sbjct: 505 AEARRSVWALYPPGTEYANLAHMLYDSVEQMSRNTPISIEVNLLGQPCPIAPYIGMNLLR 564 Query: 473 IIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPE---GHYGLNIMR 529 I +EA+ NA+KH+ A + + PD + IRDNG G P + G +GL M Sbjct: 565 IGQEALTNALKHSQAQAVWIELTYTPD-LVLLSIRDNGRGFTPPTNLDNLNGGFGLVGMY 623 Query: 530 ERAERLGGTLTFSQPSGGGTLVSIS 554 ER +R+G ++ G GT + + Sbjct: 624 ERCDRIGAQISILSQPGQGTQILVE 648 Score = 43.7 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 11/82 (13%), Positives = 27/82 (32%), Gaps = 4/82 (4%) Query: 291 WRISEGQPNPELPMQILPVTMQETVYGELHWQNSH----VSSSEPLLNSVSSMLGRGLYF 346 W I P +P+ + ++ G L + L +++ + Sbjct: 175 WVICALVPLGLPKEINVPLFLGDSTIGALTIHVPREHQFTAEQVELAQALAHQVTLAAEM 234 Query: 347 NQAQKHFQQLLLMEERATIARE 368 + + +Q + E+ A+E Sbjct: 235 QRLAQESKQAAIAREQERAAQE 256 >UniRef50_B1ZR83 Integral membrane sensor signal transduction histidine kinase n=2 Tax=Verrucomicrobia RepID=B1ZR83_OPITP Length = 742 Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats. Identities = 64/248 (25%), Positives = 107/248 (43%), Gaps = 8/248 (3%) Query: 322 QNSHVSSSEPLLNSVSSMLGRGLYF---NQAQKHFQQLLLMEERATIARELHDSLAQVLS 378 + + L + L+ + + Q ++ ER +AR+LHD+L Q L+ Sbjct: 482 AQRELQEAHDTLEQKVAERTAQLHVEMGARKTEEVQFRAVLAERTRLARDLHDTLEQTLT 541 Query: 379 YLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLT-LQQADLPSALR 437 + +QL + D +Q + L+ + LR + R L+Q DL ALR Sbjct: 542 GIALQLDTAAKLFGRDGEQSQHHLQLARNWLHQSQVDLRRSIWDLRSRELEQFDLAKALR 601 Query: 438 EMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTA 497 + + L + TS + L ++ ++L+I +EA N KHA A + + + Sbjct: 602 QSAEQLVDGTSLTIDFRTTGDRRPLPEVVEENVLRIGQEAFTNIAKHARARRVLATLTFS 661 Query: 498 PDGNHTVYIRDNGIGIGEPKEP---EGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSIS 554 P + I D+G+G P P E H+GL M ERA+RLGG + G GT +++ Sbjct: 662 P-STLRLRIEDDGVGFNVPAAPSAAESHFGLLGMTERAKRLGGHIKVDSAPGQGTSLTLE 720 Query: 555 FRSAEGEE 562 E Sbjct: 721 VPLEPLSE 728 >UniRef50_A9WFF8 Histidine kinase dimerisation and phosphoacceptor region n=3 Tax=Chloroflexus RepID=A9WFF8_CHLAA Length = 466 Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats. Identities = 76/414 (18%), Positives = 146/414 (35%), Gaps = 17/414 (4%) Query: 155 LAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKT 214 + G+ F ++ L HQ ++ + L E+ + Sbjct: 53 IVWGLLAFAAIWGVLSWAIHQERLRISNEARMLAALRESNERLELLY-----EINQRVAS 107 Query: 215 FNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIV 274 + L V + + + Y + L + Sbjct: 108 SATLDEVLDYAITLPARLVNAGAATIVLMDEQGQP-YTARVTGIDAGELERARTAFLLRL 166 Query: 275 RDNEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETV--YGELHWQNSHVSSSEPL 332 + + + L+ + P + P+ E G + + +PL Sbjct: 167 MTSPPDQPVVLSPHLGCNWAACLVLPLVEHDAHPIGWIEAFLKEGPATLRETRQPVLQPL 226 Query: 333 LNSVSSMLGRGLYFNQAQKHFQ------QLLLMEERATIARELHDSLAQVLSYLRIQLTL 386 L +V+ L + ++ + + + ER IAR+LHD +AQ L+++R+++ L Sbjct: 227 LATVAGELTEAVVNSRRRDRAIASIAAVERAISAERTRIARDLHDGVAQSLAFMRMRIDL 286 Query: 387 LKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQN 445 + + ++ + A F L +LR + R + Q ALR ++ Sbjct: 287 WEDWLTQEPERLREEFATFKANLRRQIEELRRAIFALRPIEIGQLGFAGALRRFINEFAE 346 Query: 446 QTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVY 505 Q +++D L +++ + ++EA+ N KHA A + + G ++ Sbjct: 347 QQDWDVSIDFAELPPDLPPVLELAAFRFVQEALNNVAKHAQARRVWIKLGVRDQG-LIIH 405 Query: 506 IRDNGIGIGEPKEPE-GHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSA 558 +RD+G+G +EP GH GL MRERA L G G GT V + Sbjct: 406 VRDDGVGFNPGEEPPAGHLGLRQMRERATALDGQCMIMSRPGDGTEVRVWLPLR 459 >UniRef50_C6BTX2 GAF sensor signal transduction histidine kinase n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BTX2_DESAD Length = 689 Score = 229 bits (583), Expect = 3e-58, Method: Composition-based stats. Identities = 57/259 (22%), Positives = 107/259 (41%), Gaps = 6/259 (2%) Query: 302 LPMQILPVTMQETVYGELHWQ---NSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLL 358 + ++P+ + G L + + ++ ++ L ++ + ++L++ Sbjct: 421 RTLIVVPLLEGDKKLGLLMVSNKSGGFDHADKRIMEMFAAQAVLALRNSRMFEQSEKLVV 480 Query: 359 MEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQ-SIMADFSQALNDAYRQLR 417 ER +ARELHDS+ Q L + RS + A + R +R Sbjct: 481 QGERQRLARELHDSVTQALYAITFCSDAAVRSFESGKSGAAIEQLKALQGMAQQGMRDMR 540 Query: 418 ELLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIRE 476 L+ L+ L A++ L++++ ++ L L +++ L +I E Sbjct: 541 SLIFDLHPPELESEGLVGAIQARLNSVEIRSGLGADLFVEGDERRLPLRVEEELFRIAIE 600 Query: 477 AVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLG 536 A+ N+ KH+ A + V A V I D+G G P G GL +RER ER+ Sbjct: 601 ALNNSTKHSKAESVTVKVDFAEGKTV-VQIIDDGQGFDIATLPTGGMGLRGIRERVERIN 659 Query: 537 GTLTFSQPSGGGTLVSISF 555 L + SG GT++++ Sbjct: 660 AHLDINSESGKGTVLTVKV 678 >UniRef50_Q67MG9 Sensor protein n=1 Tax=Symbiobacterium thermophilum RepID=Q67MG9_SYMTH Length = 558 Score = 229 bits (583), Expect = 3e-58, Method: Composition-based stats. Identities = 61/307 (19%), Positives = 107/307 (34%), Gaps = 24/307 (7%) Query: 272 QIVRDNEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETVYGELHWQNS----HVS 327 + + + G P+ +P+ V G + Sbjct: 232 RHLTGPTLVTQVRDLACVRATAEVGHPSGRH--ITIPLGQGGKVAGIMVLMIPPSRYLSP 289 Query: 328 SSEPLLNSVSSMLGRGLYFNQAQKHFQQ-------------LLLMEERATIARELHDSLA 374 S +L ++ +G + + + +ER IARELHD + Sbjct: 290 SDREILTALGEQIGLAIDRARLYDQLAEKERLRGRLLARLITAQEDERRRIARELHDEIG 349 Query: 375 QVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADLP 433 Q L+ L + L L R P + + + ++R ++ R L L Sbjct: 350 QALTALVVTLDFLVRH-PLSEEMLRQRLVAVKEMAETGLTEVRRVIHEMRPTALDDLGLE 408 Query: 434 SALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVS 493 +A+R ++ K+ + L +++ + ++I+EA N +KHA AS I ++ Sbjct: 409 AAIRWLVRRY-EDAGLKIDVQIEGLEERLPDYIEITVFRLIQEACTNTVKHAAASHIRIA 467 Query: 494 CVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSI 553 + TV + D+G G + EG GL +RER GG LT GT V Sbjct: 468 LRHRGN-WLTVEVTDDGKGFDIKRRGEG-VGLTGIRERVSLAGGKLTIESGPDSGTRVYA 525 Query: 554 SFRSAEG 560 Sbjct: 526 ELPVEGA 532 >UniRef50_Q8YV44 Two-component sensor histidine kinase n=3 Tax=Cyanobacteria RepID=Q8YV44_ANASP Length = 944 Score = 229 bits (583), Expect = 3e-58, Method: Composition-based stats. Identities = 76/338 (22%), Positives = 139/338 (41%), Gaps = 14/338 (4%) Query: 224 KLYRSLEASVEEKTRDLHEA-KRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEY 282 +L + E +++ +L + L + + R + V + Sbjct: 612 RLRKQAEVALQASEAELRSLFSAIPDPLCVVTAQGRVIETVAGNPRQLYSSVEEKVGKTL 671 Query: 283 LELNVGENWRISEGQ-PNPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLG 341 ++ E G Q+L V + G W ++ ++ + + Sbjct: 672 HQIFEEEQADKFMGYIQQVLRTQQVLTVEYSLQIDGRETWFSARIAPIR---HEQVIWIA 728 Query: 342 RGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSI 401 R + + + ++EER +ARE+HD+LAQ + + Q+ K+ + +D +S Sbjct: 729 RDITLQKRAEA---ASILEERNRMAREIHDTLAQAFTGILAQVGAAKQVLTDDLEATESH 785 Query: 402 MADFSQALNDAYRQLRELLTTFRLTLQQAD-LPSALREMLDTLQNQTSAKLTL--DCRLP 458 + + + R + R L + L SAL ++ L + TL + Sbjct: 786 LDLIKELARTGLVEARRSVVALRPQLLEEGSLQSALHRLVAQL-RTAAIDTTLYYEIEGA 844 Query: 459 TLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKE 518 +L +++ +LL++ +EA+ NA++HANA EI V V D + +RDNG G G Sbjct: 845 VYSLPTEIESNLLRMGQEALTNAIRHANADEIRVELVYDRD-RFCLRVRDNGQGFGVGSI 903 Query: 519 PEG-HYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 P +GL M ERAER+G LT G GT + ++ Sbjct: 904 PASEGFGLLGMSERAERIGAQLTIRSQPGQGTEIVVTV 941 >UniRef50_Q2B2D2 Two-component sensor histidine kinase n=2 Tax=Bacillus RepID=Q2B2D2_9BACI Length = 345 Score = 229 bits (583), Expect = 3e-58, Method: Composition-based stats. Identities = 58/229 (25%), Positives = 102/229 (44%), Gaps = 4/229 (1%) Query: 334 NSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPE 393 V S+ + + +MEER +AR+LHD ++Q L L + + + Sbjct: 120 EQVHSVQRLAEERSSLAQSAHAAAVMEERQRLARDLHDVVSQQLFALSMMSSAALKVFDR 179 Query: 394 DNATAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLT 452 D+ A+ + + S A ++R LL R L L + +++ L+ +T + Sbjct: 180 DSEKAKKQLKEISGIAAKAQGEMRALLLHLRPIQLSDDTLCDGIIKLIHELRGKT--TID 237 Query: 453 LDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIG 512 + + L + HL ++++EA+ N ++HA+AS+I ++ D + ++I D+G G Sbjct: 238 FQASIDEIELSKAAEEHLFRVVQEALSNILRHADASKIKLTLTEKEDYTY-LFIGDDGKG 296 Query: 513 IGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGE 561 E YGL MRER E +GG G GT + I E Sbjct: 297 FDPHIERVASYGLKTMRERCEEIGGIFNIRSKQGEGTYIEIRIPLKGRE 345 >UniRef50_Q0AF09 Multi-sensor signal transduction histidine kinase n=3 Tax=Nitrosomonas RepID=Q0AF09_NITEC Length = 498 Score = 228 bits (582), Expect = 4e-58, Method: Composition-based stats. Identities = 57/273 (20%), Positives = 105/273 (38%), Gaps = 5/273 (1%) Query: 287 VGENWRISEGQP-NPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLY 345 NW + ++ L T + T G + W ++ + + + R Sbjct: 215 SAWNWEGRIQARGDADVKWISLRATPRRTPRGAVLWDGIMLNITRN--KQIELEIARSRA 272 Query: 346 FNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADF 405 + + Q +ER IARE+HD + L+ ++ +L + ++ A Sbjct: 273 QLEELSAYSQKAKEQERTRIAREIHDDIGGTLTAIKCELVPCLDNSSRAPEFYRNKAAAV 332 Query: 406 SQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQ 465 ++ R + R + + +A++ +T + C ++LD Sbjct: 333 ESLVDMVIDSTRRIALDLRPGVLDCGIVAAVQWQAREFNQRTGIACAVVCDDEEISLDGD 392 Query: 466 MQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIG-EPKEPEGHYG 524 + V + ++ +EA+ N KHA+ASE+ V G + + DNG GI E +G Sbjct: 393 LAVAIFRVFQEALTNIAKHADASEVRVKLS-EASGEVYLEVADNGCGITYPDMEKVNSFG 451 Query: 525 LNIMRERAERLGGTLTFSQPSGGGTLVSISFRS 557 + MRER ++LGG GT V I Sbjct: 452 IRSMRERCQQLGGRFHIQGEPQTGTGVMIWIPV 484 >UniRef50_Q47FQ9 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, dimerization and phosphoacceptor region n=1 Tax=Dechloromonas aromatica RCB RepID=Q47FQ9_DECAR Length = 373 Score = 228 bits (582), Expect = 4e-58, Method: Composition-based stats. Identities = 75/314 (23%), Positives = 123/314 (39%), Gaps = 9/314 (2%) Query: 251 YQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQILPVT 310 Y+ Q L + L +R+ E ++ QP L + Sbjct: 68 YELCQRLKDNPKTREIPVIFLSALRETEDKVRGFSLGAVDYIAKPFQPEEVLARVRTHIE 127 Query: 311 MQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELH 370 ++ V+ L S L Q F Q + EER IARELH Sbjct: 128 LRRLQC----RLEERVAERTEQLRQSSDELRASRERLQELAAFLQSVREEERTAIARELH 183 Query: 371 DSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLT-LQQ 429 D L Q L+ LRI L + R Q+ + +R + R L Sbjct: 184 DELGQALTALRIDLAWINRQCKTLGPEVQARADASCAIVERTIDAVRRISEGLRPGMLDV 243 Query: 430 ADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASE 489 L +A+ +++ + L A+D ++ + + ++I+EA+ N ++HA+A+ Sbjct: 244 LGLTAAIEYLVEQFAKRNDIPCYLTSDRDEFAIDDRVSIAVFRLIQEALTNVVRHASATR 303 Query: 490 IAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGT 549 + ++ + V IRDNGIG+ + +G +GL MRER LGGT+ GT Sbjct: 304 VDITLS-QDNNTICVDIRDNGIGLATGEPKQG-FGLLGMRERVTMLGGTIDIDGS--RGT 359 Query: 550 LVSISFRSAEGEES 563 + F +GE+S Sbjct: 360 RILARFPLFKGEKS 373 >UniRef50_C1XTQ5 PAS domain S-box protein n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XTQ5_9DEIN Length = 682 Score = 228 bits (582), Expect = 4e-58, Method: Composition-based stats. Identities = 55/269 (20%), Positives = 112/269 (41%), Gaps = 6/269 (2%) Query: 297 QPNPELPMQILPVTMQETVYGELHWQNSHVSS---SEPLLNSVSSMLGRGLYFNQAQKHF 353 + P + LP+ +E G L L ++ + + + + Sbjct: 414 RKAPWETVVCLPMRFREESVGVLVIYLPGGEPGPNEMAFLTPIADLAAIAVENARLSEIK 473 Query: 354 QQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAY 413 ++ +++EER +ARELHDS++Q L + + + + + + + Sbjct: 474 ERQVVLEERQRLARELHDSVSQALYGIALGARAAQNAAERNPQALKEPLEYVLALAEAGI 533 Query: 414 RQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQ 472 ++R L+ R +LQ+ L +AL ++ + ++ L + L + Sbjct: 534 AEMRALIFELRPESLQEEGLVAALARQAAAVRARYELQVEARLE-EEPELSLDAKEALYR 592 Query: 473 IIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERA 532 + +EA+ N +KHA A + ++ + P+ + ++D+G G ++ GH G MRER+ Sbjct: 593 VAQEAIHNVVKHAEARRVWLTLESRPEA-VLLEVQDDGKGFDPTQDFPGHLGQRSMRERS 651 Query: 533 ERLGGTLTFSQPSGGGTLVSISFRSAEGE 561 E +G LT G GT V + + Sbjct: 652 EAIGARLTVESAPGQGTRVQVRLPLQTPK 680 >UniRef50_B8G173 Histidine kinase n=2 Tax=Desulfitobacterium hafniense RepID=B8G173_DESHD Length = 482 Score = 228 bits (581), Expect = 5e-58, Method: Composition-based stats. Identities = 49/237 (20%), Positives = 92/237 (38%), Gaps = 10/237 (4%) Query: 331 PLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRS 390 ++ L Q +ER I+RELHD +Q L+ L + L L Sbjct: 249 QEREALVEELQAKETVRQELLKKVISAQEDERKRISRELHDEASQSLTSLILGLKYLSEL 308 Query: 391 IPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLT-LQQADLPSALREMLDTLQNQTSA 449 E++ + ++ ++ + + +++ + R T L L A+ + + Q Sbjct: 309 --EEHEKSPAMASELKELASSTLKEVHRIAVELRPTVLDDMGLVPAIERFVKFFKRQYRL 366 Query: 450 KLTLDCRLP-TLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRD 508 + + L ++++ L +I++EA+ N K+A A ++ PD + I D Sbjct: 367 DVDFHAQNRIASRLPNEIEITLYRIVQEALTNVAKYAEARNASIVLEIKPD-YVNLIIED 425 Query: 509 NGIGIGEPK-----EPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEG 560 +G G + + H G+ M+ER LGG T GT V + Sbjct: 426 DGKGFDVDQVLKSSASDSHLGIAGMQERTSLLGGEFTIESSPDQGTAVYVRIPMERR 482 Score = 61.8 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 1/99 (1%) Query: 147 MLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPN 206 + + + L + I L F I H V P+ L ASQ I G + + + Sbjct: 170 IDQLSQLLLITTVIISLLGIFGAILISHLVTKPIRDLAAASQGISLGDYSLR-VSIYGTD 228 Query: 207 ELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKR 245 E+ L FN M+ + + EA VEE + Sbjct: 229 EIADLGHNFNAMALSIQNYAQEREALVEELQAKETVRQE 267 >UniRef50_B9XSJ3 Multi-sensor signal transduction histidine kinase n=1 Tax=bacterium Ellin514 RepID=B9XSJ3_9BACT Length = 795 Score = 228 bits (581), Expect = 5e-58, Method: Composition-based stats. Identities = 68/260 (26%), Positives = 111/260 (42%), Gaps = 8/260 (3%) Query: 306 ILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATI 365 +PV + GE + L + +A Q + EER I Sbjct: 512 RIPVLIGAASLGEGSNEGVCFVVDITERKQAEVELTKSREELRALAAHLQFIREEERKHI 571 Query: 366 ARELHDSLAQVLSYLRIQLTLLK-RSIPEDNATAQSIM----ADFSQALNDAYRQLRELL 420 RE+HD L Q L+ ++ L ++ R + ED+ ++ + + ++ +++ +R L Sbjct: 572 TREIHDELGQSLTGFKMDLAWMRARLLGEDSKASRQQLIDKIENMARLIDETANVVRRLC 631 Query: 421 TTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVL 479 T R L L +A+ + QN+T + + + L +DA+ L +I +E + Sbjct: 632 TELRPGVLDDLGLTAAIEWQIREYQNRTGIRCSTEIESGDLGVDAERSTALFRIFQELMT 691 Query: 480 NAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGI-GEPKEPEGHYGLNIMRERAERLGGT 538 N +HA AS + VS + +RDNG GI K GL MRERA LGG Sbjct: 692 NTARHAQASRVEVSLKRIG-SEIVLEVRDNGRGIKENEKAGTKSLGLVGMRERALVLGGE 750 Query: 539 LTFSQPSGGGTLVSISFRSA 558 L + G GT+V + A Sbjct: 751 LEIAGKPGRGTMVRVRVPLA 770 >UniRef50_B8G136 Sensor protein n=1 Tax=Desulfitobacterium hafniense DCB-2 RepID=B8G136_DESHD Length = 497 Score = 228 bits (581), Expect = 5e-58, Method: Composition-based stats. Identities = 65/283 (22%), Positives = 111/283 (39%), Gaps = 27/283 (9%) Query: 302 LPMQILPVTMQETVYGELHWQNSHVSSSE---------PLLNSVSS-------MLGRGLY 345 P++ L Q+ G L Q + + E ++NS+S +L + Sbjct: 203 RPVRELVALTQKVARGNLTVQGTVRAEDEIGVLTQAFNQMINSLSETNRERENLLAKLKE 262 Query: 346 FNQAQKHFQQ---LLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIM 402 + + + EER I+RELHD +Q L+ L + L +L+ ++ Sbjct: 263 NEGMRIQLLEKVMIAQEEERKRISRELHDETSQALTSLMVGLKILE--AETSISSVGEKA 320 Query: 403 ADFSQALNDAYRQLRELLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLTLDCRL-PTL 460 + Q ++ ++ + R + L L AL + Q + ++ Sbjct: 321 QEMRQVVSQTLDEVHHMARELRPSVLDDMGLIPALGRYIRDYQQKYGTEVDFHASGFEGQ 380 Query: 461 ALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIG---EPK 517 L A +V +II+EA+ N K+A A ++V + T + D+G+G Sbjct: 381 RLTASAEVAFYRIIQEALTNVAKYAQADSVSVVLDWR-EHWVTAIVEDDGVGFDTENVTN 439 Query: 518 EPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEG 560 EP GL MRERA LGG++ G GT V I + Sbjct: 440 EPSHGLGLFGMRERAALLGGSVNIESKLGTGTTVFIKIPIQDE 482 Score = 56.8 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 28/217 (12%), Positives = 70/217 (32%), Gaps = 10/217 (4%) Query: 147 MLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPN 206 ++ +V +A + + L + + P+ +LV +Q++ G + + Sbjct: 172 VVTMVWSFVATALFVSALGITAAVILTKVLTRPVRELVALTQKVARGNL-TVQGTVRAED 230 Query: 207 ELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLY--------QCSQALN 258 E+G+L + FNQM + L + R E + + + + LE + + S+ L+ Sbjct: 231 EIGVLTQAFNQMINSLSETNRERENLLAKLKENEGMRIQLLEKVMIAQEEERKRISRELH 290 Query: 259 TSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQET-VYG 317 + + + E + + R Q E+ + G Sbjct: 291 DETSQALTSLMVGLKILEAETSISSVGEKAQEMRQVVSQTLDEVHHMARELRPSVLDDMG 350 Query: 318 ELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQ 354 + ++ + + G + + Sbjct: 351 LIPALGRYIRDYQQKYGTEVDFHASGFEGQRLTASAE 387 >UniRef50_A7NRQ7 Integral membrane sensor signal transduction histidine kinase n=1 Tax=Roseiflexus castenholzii DSM 13941 RepID=A7NRQ7_ROSCS Length = 682 Score = 227 bits (580), Expect = 6e-58, Method: Composition-based stats. Identities = 62/240 (25%), Positives = 108/240 (45%), Gaps = 3/240 (1%) Query: 318 ELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVL 377 EL + + LN + L + Q ++ ++ +EER +ARELHDS++Q L Sbjct: 443 ELGELAASFNQMTDELNRRTRELAQTSAELQLKETQVKMAALEERQRLARELHDSVSQAL 502 Query: 378 SYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSAL 436 + + + + D A + ++R L+ R +LQ L +AL Sbjct: 503 YGIALGARTAQTQLERDPARLGEPLEYILSLAEAGLSEMRALIFELRPESLQTEGLVAAL 562 Query: 437 REMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVT 496 + D L+ + + P + + + L +I +EA+ N +HA+A+ + +S + Sbjct: 563 TKQSDALRARHKLDVVTRFD-PEPEISLEAKEALYRIAQEAMHNVARHAHATRVELSLL- 620 Query: 497 APDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFR 556 DG T+ IRDNG G + GH GL M ERA +GG G GT+++++ Sbjct: 621 NADGALTLEIRDNGKGFDPAQPYPGHLGLKSMPERAAHIGGAFHIESRPGAGTVITVTVP 680 Score = 62.2 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 53/136 (38%), Gaps = 10/136 (7%) Query: 147 MLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPN 206 + V L + TL + + P+ +++ + I G D + + Sbjct: 384 IATVRNTLLIMALFFIGAAAVTLWLSQRFLARPMTDMLSGVRAITAGNLD-VSVPVTSND 442 Query: 207 ELGLLAKTFNQMSSELHKLYRSLEASVEE--------KTRDLHEAKRRLEVLYQ-CSQAL 257 ELG LA +FNQM+ EL++ R L + E K L E +R L+ SQAL Sbjct: 443 ELGELAASFNQMTDELNRRTRELAQTSAELQLKETQVKMAALEERQRLARELHDSVSQAL 502 Query: 258 NTSQIDVHCFRHILQI 273 + + L+ Sbjct: 503 YGIALGARTAQTQLER 518 >UniRef50_B5I2X6 Two-component system sensor kinase n=10 Tax=Streptomyces RepID=B5I2X6_9ACTO Length = 381 Score = 227 bits (580), Expect = 6e-58, Method: Composition-based stats. Identities = 66/300 (22%), Positives = 122/300 (40%), Gaps = 15/300 (5%) Query: 270 ILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETVYGELHWQN------ 323 + ++ + ++ + + LP+ + V G L N Sbjct: 82 LAAMLHEATPERLADVRKDPRFEGWPSAHPDLVDFLGLPIRDGDEVIGALFLANKNCPKP 141 Query: 324 ----SHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSY 379 E LL+ ++ L + + ++L + EER+ +A ELHD+++Q L Sbjct: 142 EGSCGFTEEDEELLSILAQHAAIALTNARLYERSRELTIAEERSRLAHELHDAVSQKLFS 201 Query: 380 LRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALRE 438 LR+ + D + A+ + + +A +LR + R L + L + LR Sbjct: 202 LRLTAQAAAALVDRDPSRAKGELHQVAVLAAEAADELRAAVVELRPAALDEDGLTATLRT 261 Query: 439 MLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAP 498 + L +A++T R AL A + +L++ +EA+ NA++H+ A + V+ Sbjct: 262 QIHVLDRAHTARVTFAAR-NFRALPAAQEEAMLRVAQEALHNALRHSGAEHVDVTLDRRG 320 Query: 499 DGNHTVYIRDNGIGIGEPK--EPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFR 556 G + + D+G G H GL MR+R +GGTLT G GT + + Sbjct: 321 SGAV-LRVTDDGCGFEPKAIRRAGRHLGLVSMRDRTSGVGGTLTVESAPGKGTTIEMEVP 379 >UniRef50_B8FX95 Sensor DegS domain protein n=3 Tax=cellular organisms RepID=B8FX95_DESHD Length = 393 Score = 227 bits (580), Expect = 6e-58, Method: Composition-based stats. Identities = 74/388 (19%), Positives = 135/388 (34%), Gaps = 30/388 (7%) Query: 180 LNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRD 239 L + T+ + I + + L EL L + +E+ K Y+ LE + ++ + Sbjct: 28 LKAIETSKEEIFYIAETTRAETQRLIQELAQLKEEIVYTIAEVDK-YQKLERRLRQRLME 86 Query: 240 LHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQ-- 297 + E Q + S + + LQ+++ E + E I + Sbjct: 87 VSR-----EFGNHSEQEMIKSYTETKDVQVQLQLMQSKEMQLRARRDEIERSLIQMEKTI 141 Query: 298 PNPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLL 357 E + + + + G ++ Q Sbjct: 142 ERAENLLNQVTMAINLLHGGISELSQNNNP-----------------EHRQEIAQKIIRA 184 Query: 358 LMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLR 417 EER +ARE+HD AQ L+ + ++L + ++ + D ++ + D + + +R Sbjct: 185 QDEERRRVAREIHDGPAQNLANIVLRLEIAEKLLALDPTRVRAEITDLKGLVRSNLQDIR 244 Query: 418 ELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIRE 476 ++ R L SAL + L T Q L ++V L + ++E Sbjct: 245 RIIFDLRPIALDNHGFISALEKYLMTFQETYHLTCDFKVIGKERRLLPAVEVALFRSLQE 304 Query: 477 AVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEP---KEPEGHYGLNIMRERAE 533 + N KHA A V + + I D GIG P H+GL M+ER E Sbjct: 305 GLTNIAKHARADWARVLIEYE-ECQIQIQITDRGIGFNVEEAFANPGDHFGLVGMKERIE 363 Query: 534 RLGGTLTFSQPSGGGTLVSISFRSAEGE 561 G + + GT V + + E Sbjct: 364 MFNGQIILTSIPKKGTTVKLIVPNYEEG 391 >UniRef50_B1YLL4 Histidine kinase n=2 Tax=Exiguobacterium RepID=B1YLL4_EXIS2 Length = 390 Score = 227 bits (580), Expect = 7e-58, Method: Composition-based stats. Identities = 65/375 (17%), Positives = 155/375 (41%), Gaps = 20/375 (5%) Query: 196 DSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQ 255 + + E+ + ++ + +E+ + R L+ V + ++ +R ++ ++ Sbjct: 17 NIIGVVEESREEIVRITESSREQYAEIQQELRELKTRVHDYIKEAERLERHIKD--SKAR 74 Query: 256 ALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETV 315 + S+ + ++ + A LE + + ++ + EL +++ + Sbjct: 75 LVIVSKNFDNYSEQDIRTAYETANALQLESFINQRDEMNCRKRRDELERRLVQLDE---- 130 Query: 316 YGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLL------MEERATIAREL 369 + + +S +LN ++ + + Q++ L ER ++R++ Sbjct: 131 --TIERADMLISRVSVVLNFLTDDMQVMNEKYEKAMQKQEMGLKVFQSAENERRRLSRDM 188 Query: 370 HDSLAQVLSYLRIQLTLLKRSIPEDNATAQ-SIMADFSQALNDAYRQLRELLTTFRL-TL 427 HD AQ L+++ I+ L+++ + A A + + + D +R ++ R TL Sbjct: 189 HDGPAQTLAHVLIRADLIEKIHQHNGAEAAFEEIHRLRKLIRDGLADIRRIIYDLRPMTL 248 Query: 428 QQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANA 487 L L +Q ++ + + +++ +V + +I++EAV NA+KH+ A Sbjct: 249 DDLGFVPTLERYLRHMQEISNIPIHFNYLGGGERIESTYEVAVFRIVQEAVQNAVKHSKA 308 Query: 488 SEIAVSCVTAPDGNHTVYIRDNGIGIG---EPKEPEGHYGLNIMRERAERLGGTLTFSQP 544 +I + ++++DNGIG + + +GL MRER E + G Sbjct: 309 VDIRIIIEQYQHS-VRIHVKDNGIGFDFNSIVESCDESFGLIGMRERIELIDGEFEIETQ 367 Query: 545 SGGGTLVSISFRSAE 559 G GT++ + E Sbjct: 368 PGKGTVIKVRIPVEE 382 >UniRef50_UPI0001693FB4 two-component sensor histidine kinase of nitrate reduction n=2 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001693FB4 Length = 386 Score = 227 bits (580), Expect = 7e-58, Method: Composition-based stats. Identities = 68/420 (16%), Positives = 136/420 (32%), Gaps = 52/420 (12%) Query: 147 MLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPN 206 V + + + + T FF + + + + Sbjct: 14 TDRVRLLPVFIFVLVVTTAFFVIIYWQGRWLR---------------------------T 46 Query: 207 ELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHC 266 E +L+ F +S + V K ++ ++ L Q + +I Sbjct: 47 EQQMLSNVFEHISDGV---------LVLNKYLEIVKSNPAARQLLQLPED--AKKISYCS 95 Query: 267 FRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQILPVT---MQETVYGELHWQN 323 + + + ++ + P + VT ++ +G + Sbjct: 96 LCSNYPGLEKLCDYDSCYVATHQHEPVEVQIRTPVSESASVTVTTSEYEDPDHGPMFILG 155 Query: 324 SHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQ 383 E + ER I+RELHD + Q L + I Sbjct: 156 VRKVGDERKEEQ--------EKIAKMITRSILQAQENERKRISRELHDGIGQQLYIMMIH 207 Query: 384 LTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLT-LQQADLPSALREMLDT 442 L ++K ++ + + ++ + +R L R + L L +ALR + Sbjct: 208 LGMIKAEAEGQDSIINP-LGELEESTRLLIQDVRHLSAELRPSTLDDIGLVAALRNYIQD 266 Query: 443 LQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNH 502 ++ ++ A ++ L +I +EA++NA K+A I + PD Sbjct: 267 YSHKFGIQVHFAYEGSKERFPAPVETALYRICQEALINAAKYAQTENIHILLDREPD-QA 325 Query: 503 TVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEE 562 + ++D G+G GL M ERA LGG++T + GT + + EG + Sbjct: 326 RLSVQDFGVGFELKPGTARGVGLYSMEERAGILGGSVTITSQKTKGTKIEVRIPFTEGGD 385 >UniRef50_B9TKD1 Putative uncharacterized protein (Fragment) n=1 Tax=Ricinus communis RepID=B9TKD1_RICCO Length = 383 Score = 227 bits (579), Expect = 8e-58, Method: Composition-based stats. Identities = 57/266 (21%), Positives = 106/266 (39%), Gaps = 7/266 (2%) Query: 290 NWRISEGQPNPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQA 349 W + + + L + + G L + L + L Q Sbjct: 124 EWVMPDQSVSTLLLHAVAEHDEEGNTIGALVI-----GHNITELKASERHLEESRAQLQM 178 Query: 350 QKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQAL 409 + ++ ER IARE+HD L Q+LS LR+ ++ L + N ++ A + Sbjct: 179 LTYHREEAREGERKRIAREIHDELGQLLSVLRLGISTLDYGYGDTNPDLRNKTAKMGAVV 238 Query: 410 NDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVH 469 + A + L T R + ++ + AL ++ T L + D + + Sbjct: 239 DQAIDMVHTLATRLRPAVLESGIALALEWLVQEFSKSTGIDCELSVPDEDIDFDKERALP 298 Query: 470 LLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEP-KEPEGHYGLNIM 528 + +I++E++ N ++H+ A + + + + + I DNG G +G +G+ M Sbjct: 299 VFRIVQESLTNILRHSQADHVEIELTQDQE-HLKLSIHDNGQGFEVSKATKKGSFGIIGM 357 Query: 529 RERAERLGGTLTFSQPSGGGTLVSIS 554 ER LGGTL S S GT + + Sbjct: 358 HERILMLGGTLEISSSSEQGTEIRLE 383 >UniRef50_Q45827 Uncharacterized sensor-like histidine kinase Caur_0899 n=4 Tax=Chloroflexaceae RepID=Y899_CHLAA Length = 597 Score = 227 bits (579), Expect = 8e-58, Method: Composition-based stats. Identities = 86/478 (17%), Positives = 167/478 (34%), Gaps = 74/478 (15%) Query: 147 MLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAP--LNQLVTASQRIEHGQFDSPPLDTNL 204 + ++SL G+ + + +++AP L L+ G + Sbjct: 129 IRQSRSVSLLSGLLA-AVAYMAAFIAWRRLIAPEALMTLLDYVALALRGTTLAIVPWVTG 187 Query: 205 PNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDV 264 L FN+ + + R E + + + ++ LY+ + L ++ Sbjct: 188 N--LAERQSEFNR--ERVTQAQRDAE----QALSEARAYRDQMRSLYRVALTLGSTANYR 239 Query: 265 HCFRHILQIVRDNEAAEYLELNVGENWR-------------------------------- 292 +LQ + + + Sbjct: 240 QVLDTLLQESQKIVPYRAGIVLLSSGQPNELYVAFGSNLAPGDLNRSLKMDTGLAAALRA 299 Query: 293 ---------------ISEGQPNPELPMQILPVTMQETVYGELHWQ--NSHVSSSEPLLNS 335 G +LP+ VYG + + +L + Sbjct: 300 NTAQVITSFTQFPSLQQLGSLRTCKAAALLPLQAGMRVYGLFVVATDQTLTTDQVEMLMA 359 Query: 336 VSSMLGRGLYFNQA-----QKHFQQLLLMEE-RATIARELHDSLAQVLSYLRIQLTLLKR 389 +++ L+ Q ++ + L EE R +AR+LHD AQ ++ + ++ +KR Sbjct: 360 LANYAIVALHNAQLIYDLKEEREKLLSHEEEVRHQLARDLHDGPAQAMAVITMKAEFIKR 419 Query: 390 SIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTS 448 + D A A + + + S ++R +L R L+ L L + LD L+ + Sbjct: 420 LLERDPAQALAELDELSSIAKRTNYEVRTMLFELRPLMLETQGLKVTLEQYLDRLRAKAG 479 Query: 449 -AKLTLD-CRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYI 506 + L+ + + L ++++ L +I+E+V NA+KHA A+ I V D V I Sbjct: 480 NTAIVLEGTDIDKVRLGSKVEGALFNMIQESVTNAIKHAKANHIWVRLRRLNDQMLEVVI 539 Query: 507 RDNGIGIGEPK-----EPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAE 559 +D+G+G + E G +GL + ERA +GG G GT ++I Sbjct: 540 QDDGVGFDKAAVLKSYERRGSFGLLNIDERARLVGGRAEIDSTPGKGTQITIFVPIES 597 >UniRef50_B4CYV7 Histidine kinase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CYV7_9BACT Length = 694 Score = 227 bits (579), Expect = 9e-58, Method: Composition-based stats. Identities = 75/342 (21%), Positives = 132/342 (38%), Gaps = 8/342 (2%) Query: 220 SELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEA 279 L ++ ++ V ++ + Sbjct: 349 DALVQIEGTIVDRVRHLNEEILVLTSGGRIFDAVLDNPTRPDALADFLPGSKVRANGVCV 408 Query: 280 AEYLELNVGENWRISEGQPNPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSM 339 E E +R+ P +Q P + L + + + ++ Sbjct: 409 VEVGEERSPRAFRMLIRSPQDIALLQRPPWWTLPRLLWSLGGVSLATLAGWIWVAALGRR 468 Query: 340 LGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQ 399 + R + + Q+ +EERA +ARE HD+L Q + +R+QL +K E A A+ Sbjct: 469 VRRQTEVIR--QKIQREGALEERARLAREFHDTLEQQFTGIRLQLEAVKSKFGEAPAEAE 526 Query: 400 SIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLP 458 + + ++ + R + R L+Q DL +AL + + N T + + Sbjct: 527 EYLDVARSLMRHSHDEARRTVWDLRADVLEQHDLSTALEKTVAGATNGTP-RARVAVSGQ 585 Query: 459 TLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGI---GE 515 L M+ HLL+I +EAV NA+KHA ASE+ + PD + +RD+G G Sbjct: 586 PRRLPGWMENHLLRIGQEAVTNAIKHARASEVHIELDYRPD-VLQLRVRDDGCGFDANDT 644 Query: 516 PKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRS 557 GH+GL M+ERAE++ G L GT++ ++ Sbjct: 645 SASDRGHFGLLGMKERAEKIRGRLQVLSTLAAGTMIEVTVPL 686 >UniRef50_B4UAL2 Integral membrane sensor signal transduction histidine kinase n=4 Tax=Anaeromyxobacter RepID=B4UAL2_ANASK Length = 662 Score = 227 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 55/245 (22%), Positives = 92/245 (37%), Gaps = 10/245 (4%) Query: 321 WQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYL 380 + + L + + + R Q + +ER IARELHD +Q L+ L Sbjct: 403 LEQRVEERTHALNEAYAQLAAREEARAQLLRKLI-SAQEDERKRIARELHDETSQSLAVL 461 Query: 381 RIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLT-LQQADLPSALREM 439 + L + ++ A + + + ++ R + L L SA+R Sbjct: 462 AMGLEAAQDAMRGGKAP---RLEEVKAVAVRTLEDVHRIILDLRPSVLDDLGLLSAIRWY 518 Query: 440 LDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPD 499 + + + L +M+ L +I +EA+ N +HA A+ + V D Sbjct: 519 AERQLGTRGMSVRCEFGELDRRLPPEMETALFRICQEAMSNIARHAQATAVLVEVALEDD 578 Query: 500 GNHTVYIRDNGIGIGEPK----EPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 + I D+G G E +GL +RERAE LGG+ T G GT V + Sbjct: 579 -VFRIDIEDDGRGFDAEAVARREGRRSWGLMGIRERAEILGGSATVESAPGKGTRVEVRI 637 Query: 556 RSAEG 560 Sbjct: 638 PVPRA 642 >UniRef50_D2B2V1 Histidine kinase n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2B2V1_STRRD Length = 687 Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats. Identities = 71/343 (20%), Positives = 124/343 (36%), Gaps = 31/343 (9%) Query: 231 ASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGEN 290 V ++ + RL L + +Q ++ ++R A + + V Sbjct: 362 QRVVDRMFAVERDPYRLADL--LGRTGQGAQDPAAALGEVVAVIRGALGATGVGVEVRTG 419 Query: 291 WRISEG-QPNPELPM--QILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFN 347 W + EL + Q +P+ G L + ++ + Sbjct: 420 WGGPARVFRDGELRLGTQEVPLLWHAERVGTLLVAGAWPGREP-----LAVLARHLAELA 474 Query: 348 QAQKHFQQLLLMEER---------ATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATA 398 A + L ER + RELHD L L+ + + L +R + D Sbjct: 475 HAVRLTADLHRSRERIRTTRDEERRRLGRELHDGLGPALTSVTLTLDEARRRLDTDPRAV 534 Query: 399 QSIMADFSQALNDAYRQLRELLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLTLDCRL 457 + ++ + + +REL+ R L L ALR + Sbjct: 535 EKLLVRVREEMTATIASVRELVYGLRPPALDDLGLEGALRASAGETA--------VTVDG 586 Query: 458 PTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPK 517 L A ++V +I +EA+ NA +HA + + + P G V + D+G+G+ P+ Sbjct: 587 ALDDLPAAVEVAAYRIAQEALTNARRHAGPATVLIRLRRLP-GELRVEVADDGVGL--PE 643 Query: 518 EPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEG 560 P GL MRERA +GG+ + GGGT V+ + E Sbjct: 644 SPAAGVGLTSMRERAAEVGGSCVIGRRPGGGTEVTARLPTEEA 686 >UniRef50_C1XM57 Signal transduction histidine kinase, COG4585 n=1 Tax=Meiothermus ruber DSM 1279 RepID=C1XM57_MEIRU Length = 430 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 61/238 (25%), Positives = 113/238 (47%), Gaps = 5/238 (2%) Query: 330 EPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKR 389 E L+ + + + ++ +Q ++EER +ARE+HD+LAQ + + +QL + Sbjct: 194 ELLIREIRAREELERTRRELEQTSRQAGILEERQRLAREIHDTLAQGFASIVVQLEAAEM 253 Query: 390 SIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLT-LQQADLPSALREMLDTLQNQTS 448 + + A+A + QA + + R ++ R L+ LP AL+ +L Q ++ Sbjct: 254 ASEHE-ASATHYLEQARQAAREGLSEARRMVWALRPEILENTSLPEALQRLLQRWQQESG 312 Query: 449 AKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRD 508 + L +++V LL+I +EA+ N KHA A ++ D + ++D Sbjct: 313 VRTQFTLTGTPRPLHPELEVGLLRIAQEALTNIRKHAKARHANLTLSYLDD-LVLMDVQD 371 Query: 509 NGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEESQLM 566 +G+G+ G +GL +MRER E LGG +T G GT +++S + + Sbjct: 372 DGVGL--QAPTTGGFGLRLMRERVESLGGQMTLESEPGMGTTLAVSLPLYRLPSATKV 427 >UniRef50_A6CIM0 Multi-sensor signal transduction histidine kinase n=1 Tax=Bacillus sp. SG-1 RepID=A6CIM0_9BACI Length = 619 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 57/268 (21%), Positives = 117/268 (43%), Gaps = 11/268 (4%) Query: 307 LPVTMQETVYGELHWQN----SHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEER 362 P+ +++ G L S + ++S+ L + K ++ +L+EER Sbjct: 344 FPLRVEKETVGMLVAARNRTKSFTDEDVQSIATLSNQLAVTIKTRMLFKEKEKRILLEER 403 Query: 363 ATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTT 422 IAR++HD +AQ L+ ++L R + +M + L D+ R++RE + Sbjct: 404 NRIARDIHDGIAQTLAGAIMKLESAGRRFNKKPEETLKLMDESVYGLRDSLREVRESIYA 463 Query: 423 FRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNA 481 R ++ L A+ ++ ++ + ++ + R + L + ++ L I +E++ N Sbjct: 464 LRPYPTERVGLSKAVGSKIEAVKKEFDLNISFEIRGEEIELSSMVEKVLFDIFQESLQNV 523 Query: 482 MKHANASEIAVSCVTAPDGNHTVYIRDNGIGIG-----EPKEPEGHYGLNIMRERAERLG 536 +KHA AS I + + + I+D+G+G H+G+ + + AE++ Sbjct: 524 IKHAKASSIEILLSYQSENIL-LRIKDDGVGFSLFQAMLNARERPHFGILQINDSAEKIN 582 Query: 537 GTLTFSQPSGGGTLVSISFRSAEGEESQ 564 +L G GT V+I E + Sbjct: 583 ASLQIDSKEGEGTEVTIIVPKMGLEGEK 610 >UniRef50_C0ZJS5 Two-component sensor histidine kinase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZJS5_BREBN Length = 365 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 58/288 (20%), Positives = 113/288 (39%), Gaps = 12/288 (4%) Query: 283 LELNVGENWRISEGQPNPELPMQILPVTMQETVYGELHWQNSHVSSSEP-----LLNSVS 337 + + E ++P + + + V + ++ + +L +S Sbjct: 70 MATCMEETSCADCFFKRVQMPSFEMRLRTKSGVDYPVAASSARLEDESQGKLVMILRDMS 129 Query: 338 SMLGRGLYFNQAQKHFQQL-LLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNA 396 + Q + + EER IARELHD + Q L + + L ++++ E + Sbjct: 130 AQQRVEKERYQYKLTNFAIQAQEEERKRIARELHDGVGQALYSILVGLNVVRQR--ELSE 187 Query: 397 TAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDC 455 +A+ + A +++ + R L L ALR ++ ++ ++ L Sbjct: 188 PVMQHVAELVNMTSKAMEEVKRMALELRPSALDDLGLLPALRSLMKRVEKTFHIQVELHV 247 Query: 456 RLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGE 515 + A M+ L +I++EA+ N K+A AS + + + V I D+G+G Sbjct: 248 QGEKRRYSAAMETALYRIVQEAMTNTAKYAKASHLGIMFE-NREKEIVVTIVDDGVGFEV 306 Query: 516 PKEP--EGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGE 561 K G+ M+ERA+ LGGT+ GT V + + Sbjct: 307 EKTLKIGKGLGVFGMKERAQLLGGTVDIRSAPEEGTTVIVRIPVPKEG 354 >UniRef50_C1XJE4 Histidine kinase n=2 Tax=Meiothermus RepID=C1XJE4_MEIRU Length = 529 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 82/368 (22%), Positives = 132/368 (35%), Gaps = 30/368 (8%) Query: 218 MSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDN 277 +S+E L A V R L LY+ QAL ++ + Sbjct: 162 LSNEERAFLEVLAAEVAGALESARARSRDLLTLYEVDQALRAEANLGRLLERLMDRILAW 221 Query: 278 EAAEYLE--LNVGENWRISEGQPNPELPMQILPVTMQETV-------------------- 315 A L EN+ + N ELP + Sbjct: 222 AGATGGGVLLLDEENFLQPQVLRNLELPPHAFMPDHRWKEALESPVFVRENLLAVPLREQ 281 Query: 316 --YGELHWQNSHVSSSEPL--LNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHD 371 G L Q + + L L +++ + + QA ++L L EER IARE+HD Sbjct: 282 SAIGLLLVQGEAENLRQRLPFLRFLAAQVTLAVRNAQAYLRAEELALTEERNRIAREIHD 341 Query: 372 SLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQA 430 +AQ L+++ ++L L +R + D A + + L R++R + R L++ Sbjct: 342 GIAQALAFMALKLDLSERLLQTDPERALEELHQVKETLRAQIREVRRSIFALRPIDLERY 401 Query: 431 DLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEI 490 ++R Q ++ L + L ++ ++++EA+ NA KHA + Sbjct: 402 GFLESVRRYATAFAEQAGFRVRLSLP-EKIELSQASELVFFRVLQEALTNAAKHARPGLV 460 Query: 491 AVSCVTAPDGNHTVYIRDNGIGI--GEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGG 548 V + + I DNG G G G +GL MRER E GG G Sbjct: 461 QVKLTPLGERGGVLEISDNGRGFKAGTSANGLGGFGLTQMRERVEARGGRFEVVSVENQG 520 Query: 549 TLVSISFR 556 T V Sbjct: 521 TTVRAELP 528 >UniRef50_A1AUQ4 PAS/PAC sensor signal transduction histidine kinase n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1AUQ4_PELPD Length = 489 Score = 225 bits (575), Expect = 3e-57, Method: Composition-based stats. Identities = 64/302 (21%), Positives = 116/302 (38%), Gaps = 10/302 (3%) Query: 262 IDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETVYGELHW 321 H R A N G+ P + + T GE+ Sbjct: 196 HPPEMAEHFAAQFRRTVAQHREVDNAEAIVVSKSGRRIP------VHIKHSVTRVGEMSI 249 Query: 322 QNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLR 381 + + ++ +A Q + ER +AR++HD + Q L+ L+ Sbjct: 250 MQGLFRDISERVRAEEQLVELNQKL-RALSDHLQTVQERERLAMARDIHDEIGQSLTVLK 308 Query: 382 IQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTL-QQADLPSALREML 440 + L + +P + Q + + + ++ + R L L +A+ + Sbjct: 309 LDLEWIAHRLPAKESAVQERVNEMRWNIEQLTSAVQRIAADLRPPLLDSLGLAAAIDWHV 368 Query: 441 DTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDG 500 ++ + + L+ Q+ +++I++E + N ++HA A+E++VS DG Sbjct: 369 AEFSRRSGIECFVMLNEEVDPLEPQLATAVMRIVQEGLTNVLRHARATEVSVSL-CKRDG 427 Query: 501 NHTVYIRDNGIGIGEPK-EPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAE 559 + I DNG GI + E YGL M+ERA G LT GGGTL+ ++ Sbjct: 428 QLVLEIGDNGRGIRPEEIESPQAYGLMGMQERARICRGELTVGGAEGGGTLLRVTVPLQS 487 Query: 560 GE 561 GE Sbjct: 488 GE 489 >UniRef50_C6J152 Histidine kinase dimerization and phosphoacceptor region n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J152_9BACL Length = 360 Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats. Identities = 70/255 (27%), Positives = 122/255 (47%), Gaps = 5/255 (1%) Query: 310 TMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIAREL 369 + E G L Q + + VSS+ + Q + + ++EER +AREL Sbjct: 98 KLGEDELGRLAEQLERIG--KRWEEQVSSLQRLSTHNAQLAEQARVSAIVEERQRLAREL 155 Query: 370 HDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLT-LQ 428 HD+++Q L + + T + R++ +D AQ + + + A ++R LL R L+ Sbjct: 156 HDAVSQQLFAISMTATAVGRTLEKDFDKAQRQVELIEEMASVAQSEMRALLLHLRPVYLE 215 Query: 429 QADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANAS 488 +L L +++ L+ + LTL+ L L ++ HL +II+EA+ N ++HA A Sbjct: 216 GKELSQGLSDLVKELKTKVPMDLTLEID-EDLNLGKGIENHLFRIIQEAMSNTLRHAKAD 274 Query: 489 EIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGG 548 ++ + + V +RDNGIG + + YGL+ M+ER +GG++ F G G Sbjct: 275 KMEIRIHHRGEA-VKVTLRDNGIGFELDDKKQASYGLSTMQERIHEIGGSIQFITAPGKG 333 Query: 549 TLVSISFRSAEGEES 563 T + IS E Sbjct: 334 TRIEISVPLIHEESG 348 >UniRef50_B0TH54 Sensor histidine kinase, putative n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TH54_HELMI Length = 382 Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats. Identities = 74/386 (19%), Positives = 139/386 (36%), Gaps = 18/386 (4%) Query: 183 LVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHE 242 + + IE+ + + + E L K ++ + + ++ + Sbjct: 11 VRQTIESIENAKEQIFAIAEDARTECSRLQKDLQEVREKAQAVIAQVDLLT-------LK 63 Query: 243 AKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPEL 302 ++ L + S+ L + R + RD + + R + L Sbjct: 64 ERQARLRLVEVSREL--KRYTEEDIRLAYEQARDIQVNLAVLREREGQLRAKRDELERRL 121 Query: 303 PMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEER 362 V E + ++ + + L+ Q + ER Sbjct: 122 RHLEGMVQRAEQLMNQVGVVLDFMGGNLKDLHVKMDEA----QVRQQAALRIIMAQDRER 177 Query: 363 ATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTT 422 +ARE+HD AQ ++ L +Q+ L +R + D + + + L D+ ++LR++L Sbjct: 178 FRLAREIHDGPAQGMNSLVLQVELCERLLQTDPGRVRRELQELKGRLRDSLKELRKILYD 237 Query: 423 FRLT-LQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNA 481 R L L A+R +T + L+ +V + ++I+EA+ N Sbjct: 238 LRPHGLDDQGLIEAIRRYTADFSERTGLAVETRFFGQACRLERAYEVAIFRMIQEALQNV 297 Query: 482 MKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEP---KEPEGHYGLNIMRERAERLGGT 538 KHA A + V+ AP +V +RD+G+G P +GL MRERAE L G Sbjct: 298 WKHAGAKRVQVAFEIAPQA-VSVIVRDDGVGFDVADIFARPGDRFGLCGMRERAELLDGE 356 Query: 539 LTFSQPSGGGTLVSISFRSAEGEESQ 564 G GT + + + Sbjct: 357 WEVLSRPGQGTQIKFRIPLKSENDGE 382 >UniRef50_D2BHE9 Sensor histidine kinase n=5 Tax=Dehalococcoides RepID=D2BHE9_DEHSV Length = 381 Score = 225 bits (573), Expect = 4e-57, Method: Composition-based stats. Identities = 52/230 (22%), Positives = 92/230 (40%), Gaps = 7/230 (3%) Query: 333 LNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIP 392 + + L R + + +ER IA+ELHD AQ L + + P Sbjct: 143 METAQRELQRMQQNLRFYLKQITIAQEDERRRIAQELHDDTAQDLIVISRAIDRFVTQNP 202 Query: 393 EDNATAQSIMADFSQALNDAYRQLRELLTTFRLT-LQQADLPSALREMLDTLQNQTSAKL 451 + + + +N ++R R + L L AL ++ L + Sbjct: 203 NLGEDNLAELEELQNHVNRTLSEVRRFAQDLRPSVLDDLGLIPALEWLIPDLSKHFGINI 262 Query: 452 TLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGI 511 +D + ++ L +I++E++ N KHA A++ V T+ I+DNG Sbjct: 263 DIDVNGEIRRFAPETELVLFRIVQESLRNVGKHAQATKAWVYIDF-GKYKATLTIKDNGR 321 Query: 512 GIGEPKEPE-----GHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFR 556 G P+ G GL M+ERA+ +GG L+ GT+V+++ Sbjct: 322 GFLLPERVGDLAALGKLGLTGMQERAQLIGGRLSIQSKPEVGTMVTVAVP 371 >UniRef50_A9WAP8 ATP-binding region ATPase domain protein n=3 Tax=Chloroflexus RepID=A9WAP8_CHLAA Length = 491 Score = 225 bits (573), Expect = 4e-57, Method: Composition-based stats. Identities = 64/266 (24%), Positives = 103/266 (38%), Gaps = 15/266 (5%) Query: 309 VTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQL--------LLME 360 V + + W N + N++S L + +A++ + E Sbjct: 222 VALGDFSQRARRWANDEIGQLTDAFNAMSEALAQA-ERERAEREHLRAQYVTQIITAQEE 280 Query: 361 ERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELL 420 ER IARELHDS +Q L+ L + L L + + D + L L Sbjct: 281 ERKRIARELHDSTSQALTSLLVGLRSLADR--HRSPEIAQQVDDLRSIVGQILNDLHALA 338 Query: 421 TTFRLT-LQQADLPSALREMLDTLQNQTSAKLTLDCRL-PTLALDAQMQVHLLQIIREAV 478 R + L L +AL+ + + ++ + L LD ++ L +I++E + Sbjct: 339 RQLRPSVLDDLGLAAALQRYVAECRARSGLIIDLALPGLDDFRLDPVVETALYRIVQEGL 398 Query: 479 LNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPK-EPEGHYGLNIMRERAERLGG 537 N ++HA+AS +V D I D+G G +GH GLN +RERA L G Sbjct: 399 TNIIRHAHASTASVVIERRAD-RVRAIIEDDGCGFDPNALHGDGHLGLNGIRERAALLNG 457 Query: 538 TLTFSQPSGGGTLVSISFRSAEGEES 563 L G GT + + E Sbjct: 458 QLIIESSPGSGTTLYVEIPLTTRHEE 483 Score = 46.4 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 41/125 (32%), Gaps = 9/125 (7%) Query: 144 ERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTN 203 E+ + V L I + + + P+ QLV ++ + G F Sbjct: 176 EQTVAAVTGQLLITTIMAAAIGITAAAFLTWLLTRPILQLVALTKAVALGDFSQRAR-RW 234 Query: 204 LPNELGLLAKTFNQMSSELHKLYRSLEASVEEK--------TRDLHEAKRRLEVLYQCSQ 255 +E+G L FN MS L + R + T E KR L+ + Sbjct: 235 ANDEIGQLTDAFNAMSEALAQAERERAEREHLRAQYVTQIITAQEEERKRIARELHDSTS 294 Query: 256 ALNTS 260 TS Sbjct: 295 QALTS 299 >UniRef50_C5UZV3 PAS/PAC sensor signal transduction histidine kinase n=1 Tax=Gallionella ferruginea ES-2 RepID=C5UZV3_9PROT Length = 401 Score = 224 bits (572), Expect = 5e-57, Method: Composition-based stats. Identities = 58/304 (19%), Positives = 114/304 (37%), Gaps = 9/304 (2%) Query: 260 SQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQP-NPELPMQILPVTMQETVYGE 318 + + NW P + E+ L ++T Sbjct: 95 PERLIKYLHADDAASFHQSMQHSARHATPWNWEGRTLLPPDGEIKWVNLRAKYRKTDLLG 154 Query: 319 LHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLS 378 HW+ V+ ++ + L + + + EER IARE+HD + +L+ Sbjct: 155 THWKGLVVNITQNKQAEIE--LVHSRQQLRELSSHIENIKEEERTRIAREIHDEIGVLLT 212 Query: 379 YLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALR 437 L++ L +++ P D+ Q + L+ A L+ + R +L + +A+ Sbjct: 213 ALKMDLAWMRQRFPSDDGALQEKSQVMANLLDTAGIAANNLVHSLRPGSLDCFGIVAAIE 272 Query: 438 EMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTA 497 +T+ + L + + + L ++ +E + N MKHA A + V + Sbjct: 273 IEATEFTKRTATPCKIIKSSDNLDVSDEQSITLFRVFQETLNNIMKHAQARRVQVKISQS 332 Query: 498 P----DGNHTVYIRDNGIGIGEPKE-PEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVS 552 D + + D+G G E +GL ++ER +L GTL+ + G GT ++ Sbjct: 333 ATDQIDKYVELIVSDDGCGFDEAARNKPRSFGLRGIQERIRQLDGTLSITSRPGKGTKIA 392 Query: 553 ISFR 556 + Sbjct: 393 VRLP 396 >UniRef50_Q13H12 PAS/PAC sensor signal transduction histidine kinase n=5 Tax=Burkholderia RepID=Q13H12_BURXL Length = 384 Score = 224 bits (572), Expect = 6e-57, Method: Composition-based stats. Identities = 57/247 (23%), Positives = 97/247 (39%), Gaps = 7/247 (2%) Query: 322 QNSHVSSSEPLLNSVSSMLGRGL-YFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYL 380 + + + ++ + Q EE+ IARELHD L Q L+ L Sbjct: 122 ASGELCGFAKVTQDLTEQNRLAEFEQLRRLATHIQATREEEQIRIARELHDDLGQQLAAL 181 Query: 381 RIQLTLLKRSIPEDNATAQ---SIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSAL 436 ++ L L+ + ++ A A + D ++ LR + R L+ L AL Sbjct: 182 KMALADLETILRDNGAIAALTLTHTKDMHHLIDVTVASLRRIAAGLRPIVLETLGLVPAL 241 Query: 437 REMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVT 496 ++ + + + + + L II+EA+ N +HA+A E+ V Sbjct: 242 EWLIGDFTQRYHIDVNARIQTDDMNVSEAASEALFHIIQEALTNVARHAHADEVTVELAR 301 Query: 497 APDGNHTVYIRDNGIGIGEPKEPEG-HYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 + + DNG G+ P +GL MRER RL G+L+ G G ++I+F Sbjct: 302 -GGRTCVLRVEDNGQGMASATLPRETSFGLLGMRERVHRLNGSLSIDSTPGCGFRIAITF 360 Query: 556 RSAEGEE 562 E Sbjct: 361 PLETLER 367 >UniRef50_Q5NZX5 Putative sensory protein, two-component system n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5NZX5_AZOSE Length = 498 Score = 224 bits (571), Expect = 7e-57, Method: Composition-based stats. Identities = 61/302 (20%), Positives = 115/302 (38%), Gaps = 6/302 (1%) Query: 258 NTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETVYG 317 +S E +W L T + G Sbjct: 196 RSSDNFTGLIHPDDIAAFHQSMKSSSETLTRWSWAGRLCAGTHAERWISLQATPRLMDAG 255 Query: 318 ELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVL 377 + W + +++ N L + F + ++ EE++ IARE+HD L Q+L Sbjct: 256 MVLWDGIMLDATDARRN--EEKLRQSEEFLRDLCVRVGMIREEEKSAIAREIHDELGQLL 313 Query: 378 SYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALR 437 + L++ L+ ++ + D+ + ++ +D ++R++ +T R + L A+ Sbjct: 314 TVLKMDLSCMREAGGLDSRSVAKML-RMESLTDDILYRVRDIASTLRPKVLDLGLAPAIE 372 Query: 438 EMLDTLQNQTSAKLTLDCRLPTL--ALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCV 495 + + T L L LD+ + +I++E++ NA +HA A I +S Sbjct: 373 WLAQEFSSHTRIVCRLSINGDELCGNLDSTAITAIFRIVQESLTNAARHARAKHIDISLT 432 Query: 496 TAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 + IRD+G+G P GL+ +RERA LG L + GT + + Sbjct: 433 RRGQ-FLQLLIRDDGVGFDPDALPICCNGLSGIRERAVILGAELRIDSSAHTGTTLEVLI 491 Query: 556 RS 557 Sbjct: 492 PH 493 >UniRef50_A5GBT2 Integral membrane sensor signal transduction histidine kinase n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5GBT2_GEOUR Length = 610 Score = 224 bits (571), Expect = 7e-57, Method: Composition-based stats. Identities = 57/245 (23%), Positives = 100/245 (40%), Gaps = 6/245 (2%) Query: 316 YGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQ 375 +G L L L ++ + + + EER IAR++HD +AQ Sbjct: 358 WGLLVLMCVLFYRVLALDREEREAARLSLEKSRRAE---ETAIDEERRRIARDIHDGVAQ 414 Query: 376 VLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLT-LQQADLPS 434 L+ + ++ ++ + + + + F + L+ ++R + R L + Sbjct: 415 DLAMMNMRASVWEHLVHSNREKMTEEIKLFRKLLHKNIGEVRRAIFAMRPVELDELGFSE 474 Query: 435 ALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSC 494 A+ + T ++ L+ +A+ Q+++ L +II+E++ N KHA A+E V Sbjct: 475 AVGRYVKEFGQYTGLRIDLEMAGD-IAMPRQLELELYRIIQESLNNIAKHAGATEAGVRI 533 Query: 495 VTAPDGNHTVYIRDNGIGIGEPK-EPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSI 553 G TV I DNG G GL M+ER ER GT G G ++I Sbjct: 534 SDDVAGCLTVSIADNGKGFDLSALAQSPRLGLRQMKERVERRNGTFLIDSGPGRGAAITI 593 Query: 554 SFRSA 558 F Sbjct: 594 CFPIT 598 >UniRef50_A4J6C1 Histidine kinase n=2 Tax=Peptococcaceae RepID=A4J6C1_DESRM Length = 379 Score = 224 bits (571), Expect = 8e-57, Method: Composition-based stats. Identities = 68/356 (19%), Positives = 134/356 (37%), Gaps = 13/356 (3%) Query: 213 KTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLY-----QCSQALNTSQIDVHCF 267 + ++ H ++ +E +++ L + + L + + S+ Sbjct: 24 EQIYYIAESAHLEWQRVENEIKQTKYQLGKIIDEVNKLEIEERRARVRLMEVSRDFDRYN 83 Query: 268 RHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETVYGELHWQNSHVS 327 ++ + L L + + L + + + +L Q Sbjct: 84 EAAIKQAYEQAQVTQLRLVMLREEEKTLRFKRDHLEISLKRMKDTADRAEKLVSQVGVAL 143 Query: 328 S-SEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTL 386 L+ VS L Q + EER +ARE+HD AQ ++ + ++ Sbjct: 144 QYLSKDLSGVSEKLTNLHDMQQLGISIIR-AQEEERKRVAREIHDGPAQSMANIVMRAEF 202 Query: 387 LKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQN 445 + + + + + + Q + + + +R+++ R L L A++ L+ + Sbjct: 203 CLKLLEMNPSMVGNELVSLQQLVRQSLQDVRKIIFDLRPMVLDDLGLIPAVKRYLEDYKV 262 Query: 446 QTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVY 505 Q + DA M+V + +II+EA++N KHA A + + VY Sbjct: 263 QNNISADFVFIGKEQRFDASMEVAVFRIIQEALINIKKHAAARHVLIKMELIS-SRINVY 321 Query: 506 IRDNGIGIGE----PKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRS 557 I+D+G G P+ YGL MRER + L GTL+ + G GT ++ S Sbjct: 322 IKDDGCGFVVGHIKPRGDGSGYGLLGMRERIQLLKGTLSINSTPGKGTELNFSLPL 377 >UniRef50_C9NJB7 GAF sensor signal transduction histidine kinase n=7 Tax=Streptomyces RepID=C9NJB7_9ACTO Length = 381 Score = 224 bits (571), Expect = 8e-57, Method: Composition-based stats. Identities = 70/358 (19%), Positives = 130/358 (36%), Gaps = 20/358 (5%) Query: 217 QMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQ-----IDVHCFRHIL 271 +M L + S ++ + L ++ Q + Sbjct: 24 EMRDVLKTIVASARELLDAEYAALGVPDDHGGFAQFVVDGVSDEQWKAIGPLPRQHGILA 83 Query: 272 QIVRDNEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETVYGELHWQN-------- 323 ++ + + ++ + LP+ + G L N Sbjct: 84 AMLHEAKPQRLADVRKDPRFEGWPDAHPDMSDFLGLPIQDGDETIGALFLANKRCPRPTG 143 Query: 324 --SHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLR 381 E LL ++ L + + ++L + EER+ +A ELHD+++Q L LR Sbjct: 144 GCGFTEEDEELLEILAQHAAIALTNARLYERSRELTIAEERSRLAHELHDAVSQKLFSLR 203 Query: 382 IQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALREML 440 + + D A+ + + +A +LR + R L + L + LR + Sbjct: 204 LTAQAAAALVDRDPVRAKGELQQVATLAGEAVDELRAAVVELRPAALDEDGLVATLRTQV 263 Query: 441 DTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDG 500 L SA++T AL A + +L++ +EA+ NA++H+ A ++ VS + Sbjct: 264 QVLDRAHSARVTFTSAG-VRALPAAQEEAMLRVAQEALHNALRHSGAGQVDVSLARSTTT 322 Query: 501 NHTVYIRDNGIGIGEP--KEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFR 556 + I D+G G + H GL MR RA +GG L G GT + + Sbjct: 323 AV-LRITDDGCGFDPDVVRRAGRHLGLVSMRHRAGGVGGRLVVDSEPGTGTTIQMEVP 379 >UniRef50_Q1D524 Sensor histidine kinase n=2 Tax=Cystobacterineae RepID=Q1D524_MYXXD Length = 427 Score = 224 bits (570), Expect = 9e-57, Method: Composition-based stats. Identities = 62/228 (27%), Positives = 100/228 (43%), Gaps = 6/228 (2%) Query: 332 LLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSI 391 L+ Q ++L ++EER +ARE+HD L LS + IQ + Sbjct: 205 LVYLNEREAAAHREVVSLQGDLKELAVVEERNRMAREIHDGLGASLSSMIIQSEYILNLA 264 Query: 392 PEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKL 451 E + + + ++ +LR L R + +L L + T + +T + Sbjct: 265 RE--EGLREEIRELKLTAEESIEELRRSLRMMR---EDFELAQGLEDYAKTFRERTGLDI 319 Query: 452 TLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGI 511 + LD +Q+ L +I++E++ NA+KHA A + V + D + +RD+G Sbjct: 320 RFERTGLQRKLDPDVQLALFRILQESLSNAVKHAEAKGVQVRLDFSED-RVNLVVRDDGK 378 Query: 512 GIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAE 559 G + P GHYGL MRERA +LGG L G G V+ S Sbjct: 379 GFDPSRTPRGHYGLLNMRERAMKLGGQLIVDSSPGAGAQVAFSLPCRP 426 >UniRef50_B2A6W3 Integral membrane sensor signal transduction histidine kinase n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A6W3_NATTJ Length = 490 Score = 224 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 74/415 (17%), Positives = 141/415 (33%), Gaps = 42/415 (10%) Query: 182 QLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLH 241 +L D L ++ N++ L ++ E ++ Sbjct: 72 RLHQLVSETMDNNSDVEYLFIEGAGGTVEISSFANELPDNLKQVNTVEENEEY----NIQ 127 Query: 242 EAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLEL---------------- 285 ++Y + + +I + + Sbjct: 128 PLNTEHGLVYDIAVPIFEGRIGTVRLGMSTSEIDQLVHQICSNIWLTVLIVSIVGLITAY 187 Query: 286 ------NVGENWRISEGQPNPELPMQILPVTMQETVYGELHWQ-NSHVSSSEPLLNSVSS 338 +S + + + +P+ + G+L + + L + S Sbjct: 188 LLSLIIINPIYRLVSATEQVAKGHLHGIPLVVTNDEIGKLSLSFKKMIEGLKSLRENNES 247 Query: 339 ---MLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDN 395 L + + + EER I+RELHD Q L+ L++ L + + D Sbjct: 248 CWVQLEKKEEMRKKLLNKMMSAQEEERKKISRELHDGTGQSLTTLKLALKQISET--NDL 305 Query: 396 ATAQSIMADFSQALNDAYRQLRELLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLTLD 454 A+ + + + D +++ L R + L L AL + L +Q +T Sbjct: 306 EEAKRMSEELRELTGDVIDEIKSLARDLRPSVLDDLGLDYALEKYLKEIQGRTGVSTEFW 365 Query: 455 CRLP-TLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGI 513 + L L+ ++ ++ +I++E+V N++KHA+AS+I V V V I D+G G Sbjct: 366 FQADQGLKLEPEISTNIYRIVQESVNNSIKHADASKIDV-IVKTISSQLIVIIEDDGKGF 424 Query: 514 GEPK-------EPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGE 561 + G+ M ERAE +GG L G GT V + A+ E Sbjct: 425 DLEQFSDNYKQNETRGLGIFGMEERAELIGGHLAIESTPGDGTAVYLKINLAKEE 479 Score = 57.6 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 36/239 (15%), Positives = 79/239 (33%), Gaps = 36/239 (15%) Query: 14 AFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLRMQS---------YRLGYDLQSGS 64 I + + + + R I+IA ++ +S YRL + Sbjct: 24 LMLGIWTVVQVRSTTSSALNEYLQR--HGISIAKNVSTRSENYLLTNDRYRLHQLVSETM 81 Query: 65 PQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPWYQAN 124 + LF + V + +P+ +K + + N L+ Y Sbjct: 82 DNNSDVEYLFIEGAGGTVEISSFANELPDNLK-QVNTVEENEEYNIQPLNTEHGLVYDIA 140 Query: 125 INNY------------VNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRI 172 + + ++ID V + + + + T + Sbjct: 141 VPIFEGRIGTVRLGMSTSEIDQLVHQICSNI-----------WLTVLIVSIVGLITAYLL 189 Query: 173 RHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEA 231 ++ P+ +LV+A++++ G PL +E+G L+ +F +M L L + E+ Sbjct: 190 SLIIINPIYRLVSATEQVAKGHLHGIPLVV-TNDEIGKLSLSFKKMIEGLKSLRENNES 247 >UniRef50_A6WW19 Integral membrane sensor signal transduction histidine kinase n=46 Tax=Rhizobiales RepID=A6WW19_OCHA4 Length = 485 Score = 224 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 58/234 (24%), Positives = 107/234 (45%), Gaps = 7/234 (2%) Query: 336 VSSMLGRGLYFNQAQKHFQQLL--LMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPE 393 + ++ R + N+ ++ Q+++ EERA +ARELHD ++Q L +R + L R + Sbjct: 249 LLNLRERRMADNKLKELAQRIIDTQEEERARLARELHDGISQNLVGVRYAIDLASRQVRM 308 Query: 394 DNATAQSIMADFSQALNDAYRQLRELLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLT 452 D+ A + S ALN A +++R L R L L AL+ + + +T + Sbjct: 309 DSGGAPLAIEKASDALNGAIKEVRRLSHDLRPRILDDLGLTVALKALCEHFSERTGIETQ 368 Query: 453 LDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIG 512 L+ L + L ++++EA+ N +H+ AS++++ G T+ + D+G G Sbjct: 369 LEASGLNETLKPEASTALYRVVQEALTNVERHSGASQVSIRLW-GSGGKVTMTVADDGNG 427 Query: 513 IGEPKEPE--GHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEESQ 564 + GL M+ER GG L + GT ++ + E + Sbjct: 428 FTARDLKDQLSGLGLRNMQERMAHFGGVLLVETGAD-GTQLTARLPKSATERKR 480 >UniRef50_C9RWH5 Integral membrane sensor signal transduction histidine kinase n=13 Tax=Bacillaceae RepID=C9RWH5_GEOSY Length = 344 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 62/266 (23%), Positives = 119/266 (44%), Gaps = 14/266 (5%) Query: 310 TMQETVYGELHWQNSHVSSSE----------PLLNSVSSMLGRGLYFNQAQKHFQQLLLM 359 +++ GELH + E L + + ++ + +L Sbjct: 81 HIEQGEMGELHREEPPPELQELWRQIVKLQTQWLEQTKRVQKLAAEKAEQEERLVERILS 140 Query: 360 EERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLREL 419 EER +ARELHDS++Q L + ++ + ++P D+ + + Q ++ + ++R L Sbjct: 141 EERTRLARELHDSVSQQLFAASMMMSAVMETMPPDDERHRKQLKMVEQMIHQSQLEMRAL 200 Query: 420 LTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAV 478 L R L+ L + E+L L + L + ++ ++LD ++ HL +I++E++ Sbjct: 201 LLHLRPVHLKGKSLQEGMNELLTELAGK--VPLEMKWKIEDISLDKGVEDHLFRILQESL 258 Query: 479 LNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGT 538 N ++HA A + V + DG + + D+G+G + G YGL M ERA +GG Sbjct: 259 SNTLRHAKAKSLEV-LLIERDGFAILRVTDDGVGFDVERSKSGSYGLQHMYERAAEIGGM 317 Query: 539 LTFSQPSGGGTLVSISFRSAEGEESQ 564 L G GT + + + + Sbjct: 318 LKIVSLKGQGTRLEVKVPLLHRGDDR 343 >UniRef50_A6GSY8 Sensory transduction histidine kinase n=1 Tax=Limnobacter sp. MED105 RepID=A6GSY8_9BURK Length = 512 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 60/243 (24%), Positives = 103/243 (42%), Gaps = 4/243 (1%) Query: 317 GELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQV 376 G + + + + L + + +ER IARE+HD + Sbjct: 264 GNVFVWDGVLLDISDRKQA-EERLQNAQTELRLVTTEFEKRREQERGAIAREIHDDMGGS 322 Query: 377 LSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSAL 436 L+ L+ + L +++ D+A Q + D + + + + R + L AL Sbjct: 323 LTKLKADVAWLNKNLTADSA-IQEKLDDMLELIEHLLASSQRIAKDLRPGILDYGLIPAL 381 Query: 437 REMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVT 496 ++ Q +T + T C + L LD++ L +I++EA+ N +KHA A+ + V Sbjct: 382 EWQMNDFQKRTQIEGTFQCNVEELDLDSEQSTALFRILQEALTNIVKHAQATRVDVEL-F 440 Query: 497 APDGNHTVYIRDNGIGI-GEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 + T+ IRDNG GI K E +GL M+ER G + S G GT V +S Sbjct: 441 VTESELTLEIRDNGRGIENTDKLKETSFGLRGMQERVAAFEGWVDVSGSLGSGTTVMVSI 500 Query: 556 RSA 558 + Sbjct: 501 PRS 503 >UniRef50_A1HU07 Integral membrane sensor signal transduction histidine kinase n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HU07_9FIRM Length = 478 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 77/429 (17%), Positives = 147/429 (34%), Gaps = 31/429 (7%) Query: 161 IFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPL-DTNLPNELGLLAKTFNQ-- 217 I LR +V L + + D + N EL LA +F Sbjct: 49 ISIANTLALRAANLILVNNYYDLHELVKDTQRTNDDVRYVFVVNNQGEL--LAHSFPAGF 106 Query: 218 ---MSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIV 274 + VE T + + +L ++ ++ +++L Sbjct: 107 PKGLLQANTLASNEQYKIVELATEEGLVRDIAVPILEGRLGIVHVG-LNDASLQNVLNRT 165 Query: 275 RDNEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETVYGELHWQNSHVSSSEP--- 331 + + + P+Q L G+L + S E Sbjct: 166 TRQIMLDMVIAVLIGIMATMFLTRRLVKPIQELVHVTSAITRGDLTQRAKATSDDEVGKL 225 Query: 332 --LLNSVSSMLGRGLYFNQAQKHFQQ-------LLLMEERATIARELHDSLAQVLSYLRI 382 N+++ L + + + ++ + + EER IARELHD Q L+ L + Sbjct: 226 AVAFNAMADYLQQTMDELKQKEEARTHLLQKVIVAQEEERKRIARELHDETGQTLASLMM 285 Query: 383 QLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLT-LQQADLPSALREMLD 441 L L + PE + + + A+ + + R + L L A+ + ++ Sbjct: 286 GLKCLAATCPESERGCR--LEEMRLAVKKTIDAVHRMAIELRPSILDDMGLIPAVEKYVN 343 Query: 442 TLQNQTSAKLTLDCRLP-TLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDG 500 ++ L + L +++V + +I++EA+ N K+A A + + +T Sbjct: 344 DFRHNYGIDTDLHIQWQCEKRLVHEIEVTVYRIVQEALTNIAKYAKADNVCI-IMTCDRR 402 Query: 501 NHTVYIRDNGIGIGEPK-----EPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 V + D+G+G GL M+ERA +GG LT G GT + + Sbjct: 403 GLEVIVEDDGVGFDADAILQQSVAGTQLGLFGMQERATLVGGALTIESTPGRGTTLFLRI 462 Query: 556 RSAEGEESQ 564 E + + Sbjct: 463 PFMEADRYE 471 Score = 64.9 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 23/157 (14%), Positives = 51/157 (32%), Gaps = 2/157 (1%) Query: 155 LAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKT 214 + + + + ++V P+ +LV + I G +E+G LA Sbjct: 170 MLDMVIAVLIGIMATMFLTRRLVKPIQELVHVTSAITRGDLTQR-AKATSDDEVGKLAVA 228 Query: 215 FNQMSSELHKLYRSLEASVEEKTRDLHE-AKRRLEVLYQCSQALNTSQIDVHCFRHILQI 273 FN M+ L + L+ E +T L + + E + ++ L+ + Sbjct: 229 FNAMADYLQQTMDELKQKEEARTHLLQKVIVAQEEERKRIARELHDETGQTLASLMMGLK 288 Query: 274 VRDNEAAEYLELNVGENWRISEGQPNPELPMQILPVT 310 E E R++ + + + + Sbjct: 289 CLAATCPESERGCRLEEMRLAVKKTIDAVHRMAIELR 325 >UniRef50_UPI00016AFAA4 response regulator/sensory box histidine kinase n=1 Tax=Burkholderia thailandensis MSMB43 RepID=UPI00016AFAA4 Length = 672 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 67/334 (20%), Positives = 122/334 (36%), Gaps = 15/334 (4%) Query: 232 SVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENW 291 V +K D+ R E+L Q + + Q++ Sbjct: 345 RVNQKLCDIVGYTRE-ELLALTFQDITHPDDLDADLAQVRQVLDGQID--------TYTM 395 Query: 292 RISEGQPNPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQK 351 + + L V + G+ + S V+ + L + Sbjct: 396 EKRYFRKDHSEVWIELTVALMRDDAGKPSYFISVVADIAERKRA-EEALRISREELRRLS 454 Query: 352 HFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATA--QSIMADFSQAL 409 Q + EE A IARELHD Q L+ L++ +TLL+ P ++ ++ + Sbjct: 455 AHIQKIREEEMARIARELHDDFGQQLTALKMAVTLLEHKKPAGPERLISRNDLSSIYALI 514 Query: 410 NDAYRQLRELLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQV 468 + +R R L L A+ +++ + +T + + + +V Sbjct: 515 DQLINSVRRFAADLRPAMLDDLGLIPAIDWLIEEFSARYHVHVTRHIDAQAIHFNRESRV 574 Query: 469 HLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKE-PEGHYGLNI 527 + +I++EA+ N +H+ A+E+ + D + V I DNG G +GL Sbjct: 575 GVFRIVQEALTNVARHSAATEVVIDITR-DDSHCIVRIADNGRGAVRDSSLGRRSFGLLG 633 Query: 528 MRERAERLGGTLTFSQPSGGGTLVSISFRSAEGE 561 MRERA LGG G G +++++ A E Sbjct: 634 MRERAALLGGDTQIRTSPGAGFVLTVTLPLAAVE 667 >UniRef50_C0Q8Z0 Two-component hybrid sensor and response regulator histidine kinase n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0Q8Z0_DESAH Length = 708 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 76/411 (18%), Positives = 146/411 (35%), Gaps = 26/411 (6%) Query: 153 ISLAGGIGIFTLVFFTLRRIRHQVVAP--LNQLVTASQRIEHGQFDSPPLDTNLPNELGL 210 +L I I V R +++ + + + S+ + P+ + + G Sbjct: 301 AALIVSILIGISVLILYRIALQEILRRKRVERELRFSEERYRDIYHKTPVMLHSIDTTGR 360 Query: 211 LAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHI 270 + + + ++ + + TR + R + + FR Sbjct: 361 IIRVSDYWLEKMGYTRNEVIGR--DLTRFYTKESRSHAL----------GVVFPEFFRTG 408 Query: 271 LQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQ----ETVYGELHWQNSHV 326 + + + + + + ++ L V++ V L + Sbjct: 409 VCKDVPYTYLKKNGGRIDILLSCHGVRDDSDRVVRSLAVSVDVTEKNEVQTALEAATRKL 468 Query: 327 SSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLME----ERATIARELHDSLAQVLSYLRI 382 S+ L L Q + +ME ER +ARELHD L QVL+ L+I Sbjct: 469 STYSMDLEQQVQKRTVELEKVQDKLRKLSGSIMEAHEIERGALARELHDHLGQVLTALKI 528 Query: 383 QLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALREMLD 441 ++R + + A S ++D +R++ R L L AL + Sbjct: 529 DAVWIERFLSPRDPDAAVRAGRISSLIDDTIGDVRKMAFRLRPGVLDDLGLVEALESLTG 588 Query: 442 TLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGN 501 + ++ +D+ + L +I +EA+ NA++H+ AS +A++ G Sbjct: 589 DFEERSDITCLFQAA-ALPDIDSTLATALYRIAQEALTNAIRHSRASIVALTLA-MDQGK 646 Query: 502 HTVYIRDNGIGIG-EPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLV 551 + I+DNG+G + +GL M+ERA GG L GT V Sbjct: 647 LVLKIKDNGVGFAFDDINENQGFGLAGMQERATLAGGVLEIVSGPEQGTSV 697 >UniRef50_B4D5C3 Histidine kinase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D5C3_9BACT Length = 697 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 80/387 (20%), Positives = 142/387 (36%), Gaps = 28/387 (7%) Query: 182 QLVTAS-QRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDL 240 +L A +R+ G P+D G L + ++ L +L L K +L Sbjct: 316 RLEDAIFRRVGRG-LPPKPIDVTA----GQLLEG--RLDRRLVRLQAQLVEQSRRKGEEL 368 Query: 241 HEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNP 300 + EVL+ + + + IL + L +GE+ + P Sbjct: 369 LVM-KAGEVLFNARLSPSDDGVSSLANDSILSLTG------ICRLQMGEHRPVLGDWPVS 421 Query: 301 ELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSV-------SSMLGRGLYFNQAQ--K 351 + + V W + ++ + +ML + A Sbjct: 422 AFELLLPSPDDVHVVKPPDWWTQQRAAWLLAVVTGLLVGAMCWVAMLRHRVRLQTAIISD 481 Query: 352 HFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALND 411 + + ER IARELHD++ Q L+ + + ++ E + + + Sbjct: 482 RLRAEAALNERERIARELHDTVEQDLAAIGMHFEVITDRALELEPMVRENFEAAVRQVRR 541 Query: 412 AYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHL 470 + + + R TL + L AL E L A P L ++ HL Sbjct: 542 SQADMHHAVWDLRSGTLVERGLGPALEEALQLSAAHCGAVPECKEYGPVRRLPGVIEHHL 601 Query: 471 LQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEG--HYGLNIM 528 L+I +EA+ NA++HA I+++ D T+ + D+G G + +GL M Sbjct: 602 LRIGQEAMSNAVRHAAPKRISIALRYEGD-TLTMRVEDDGCGFDVEARSQNTARFGLMGM 660 Query: 529 RERAERLGGTLTFSQPSGGGTLVSISF 555 RER ER+GG L+ G G++V + Sbjct: 661 RERVERIGGRLSVQSTPGTGSVVEVVL 687 >UniRef50_A7NG30 Multi-sensor signal transduction histidine kinase n=1 Tax=Roseiflexus castenholzii DSM 13941 RepID=A7NG30_ROSCS Length = 591 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 81/382 (21%), Positives = 129/382 (33%), Gaps = 49/382 (12%) Query: 224 KLYRSLEASVEEKTRDLHEAKRRLEVL------------YQCSQALNTSQIDVHCFRHIL 271 YR ++ E L VL Y C L ++ F Sbjct: 212 NAYRDQTRALYEAAYTLATTNDYQNVLEVTLDESQKLAPYTCGMVLLSTGQTNQLFVASS 271 Query: 272 QIVRDNEAAEYLELNVGENWRISEGQPNP-------------------ELPMQILPVTMQ 312 + + N+ + + G R G +LP+ Sbjct: 272 RGLDPNDQERIVTIGPGAIGRTIRGSDPVVLDNFRDDPELMAFTSLHRHRTACLLPLRFG 331 Query: 313 ETVYGELHWQNSHVS----SSEPLLNSVSSMLGRGLYFNQA-----QKHFQQLLLMEE-R 362 YG + + + H L +++S L Q Q+ + L EE R Sbjct: 332 LNTYGVMVFASDHERAFGHEEVEKLAALASYALVALQNAQLIYDLQQERTKLLSKEEEVR 391 Query: 363 ATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTT 422 +AR+LHD AQ L+ + + + +KR + D A + Q +R +L Sbjct: 392 HQLARDLHDGPAQALAAITMNVEFIKRLLERDPARVLPELDKLGQLAKRTTHDVRTMLFE 451 Query: 423 FRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNA 481 R L+ L L++ + K+ L+ LD +++ L I++EAV NA Sbjct: 452 LRPLALETQGLDVTLQQYFERF-RDNPTKIILEADTIDAQLDTKVEGTLFNIVQEAVNNA 510 Query: 482 MKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEP-----EGHYGLNIMRERAERLG 536 +KHA A I V P I D+G G K G +GL + ERA +G Sbjct: 511 LKHAKAQHIWVRLRQTP-TTLETIIEDDGRGFDVEKVRASYDQRGSFGLLNIEERASLMG 569 Query: 537 GTLTFSQPSGGGTLVSISFRSA 558 G + G GT + Sbjct: 570 GVAEVTSTPGKGTTWKVIVPLQ 591 >UniRef50_C8NE28 Sensor histidine kinase n=1 Tax=Granulicatella adiacens ATCC 49175 RepID=C8NE28_9LACT Length = 355 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 57/214 (26%), Positives = 99/214 (46%), Gaps = 4/214 (1%) Query: 351 KHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALN 410 + ++ ++ +ER IARELHDS++Q L + ++ L + Q +A L+ Sbjct: 142 EETKEQVIEQERRRIARELHDSVSQQLFAAMMMISALNERKQHFDEKEQKQLAMIEHVLS 201 Query: 411 DAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVH 469 A ++R LL R +L+ L S + +L L QT ++ + + + L ++ H Sbjct: 202 QAQSEMRALLLHLRPISLENKSLKSGIEGLLVEL--QTKVQMKIHWDIEDVTLPEGVEDH 259 Query: 470 LLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMR 529 L +I +E + N ++H++A + V D N I D+G+G G YG+N M+ Sbjct: 260 LFRIAQELLSNTLRHSHAKHLEVYL-RQKDSNVIFKIEDDGVGFNVDDIHTGSYGINNMK 318 Query: 530 ERAERLGGTLTFSQPSGGGTLVSISFRSAEGEES 563 ER + LGG + GT + I E Sbjct: 319 ERVQGLGGQVKIVSFPNQGTTIEIKIPLGRHLEG 352 >UniRef50_P54663 Sensor protein degS n=33 Tax=Bacillales RepID=DEGS_BREBE Length = 386 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 73/360 (20%), Positives = 142/360 (39%), Gaps = 20/360 (5%) Query: 202 TNLPNELGLLAKTFNQMSSELHKLYRSLEAS---VEEKTRDLHEAKRRLEVLYQCSQALN 258 + +G + ++S + Y SLE V K ++ + R EV + ++ Sbjct: 21 DKTLDTVGKSREQIFEISEQSRNEYVSLEQELQEVRMKVAEIIDQSDRAEVHARFARNRL 80 Query: 259 TS------QIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQIL--PVT 310 + R + + + NE L L E ++ + + E + L + Sbjct: 81 AEVSKQFHRYSNEEIRKVYE--QANELQVKLALLQQEEQQLRDRRDAIERRLLNLKDTIE 138 Query: 311 MQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELH 370 E + G++ + ++ L V L Q EER ++RE+H Sbjct: 139 RAEELVGQMTVVYNFLTGD---LRQVGEALEDAREKQAFGLQIIQ-AQEEERRKLSREIH 194 Query: 371 DSLAQVLSYLRIQLTLLKRSI-PEDNATAQSIMADFSQALNDAYRQLRELLTTFR-LTLQ 428 D AQ+++ + ++ L++R + A + D + + + ++R ++ R + L Sbjct: 195 DGPAQMMANVLLRSELVERIYHDKGIDEALKEIRDLRKMVKSSLAEVRRIIYDLRRMALD 254 Query: 429 QADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANAS 488 L L++ + T + T + +++ L ++++EA+ N KHA AS Sbjct: 255 DLGLIPTLKKYVKTFEEHTGIFVDFKHIGKGERFPEHVEIALFRLVQEALQNTRKHAKAS 314 Query: 489 EIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGG 548 + V TV I+DNG G + ++ EG +GL M+ER L G L G Sbjct: 315 HVHVKIE-EQKTKFTVVIKDNGKGFDQTEKKEGSFGLVGMKERVNMLKGQLVIRTKPNDG 373 >UniRef50_C6XAR1 PAS/PAC sensor signal transduction histidine kinase n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6XAR1_METSD Length = 465 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 56/245 (22%), Positives = 100/245 (40%), Gaps = 4/245 (1%) Query: 315 VYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLA 374 GE+ W + ++ + + R + +ER IARE+HD L Sbjct: 222 HNGEVQWGGIITNITQSKNEKLE--IERSRQRMAELSAHLTQVKEQERRRIAREIHDDLG 279 Query: 375 QVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPS 434 L+ ++I LT + + I D + ++ + + + + R + + + + Sbjct: 280 GNLTAIKIGLTSIIKRINPDEPKLVEKALNLESIVDRTFDIVHRIASDLRPDVLELGIVA 339 Query: 435 ALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSC 494 AL + Q S LA+ A + L +I +EA+ N KHA A ++ V Sbjct: 340 ALEWQCGQFEKQFSLPCRFYSSQTELAVSADEAITLFRICQEAMSNIAKHARARQVEVEL 399 Query: 495 VTAPDGNHTVYIRDNGIGIG-EPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSI 553 + D + + I D+G GI + + +GL MRER L G+L + GGT V + Sbjct: 400 LVE-DRDIMLRIVDDGQGIRMQDQHKANSFGLRGMRERVAALDGSLEVEKRVRGGTAVQV 458 Query: 554 SFRSA 558 + Sbjct: 459 KIPRS 463 >UniRef50_B4D6U9 Multi-sensor signal transduction histidine kinase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6U9_9BACT Length = 638 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 65/290 (22%), Positives = 117/290 (40%), Gaps = 12/290 (4%) Query: 281 EYLELNVGENWRISEGQPNPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSML 340 + E RI + ++ I P+ G++ + ++ + Sbjct: 354 AAESVVHFETVRIRKDGSCVDISATISPINDSA---GKIVGASQIARDITEQKRALEQLR 410 Query: 341 GRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLL-KRSIPEDNATAQ 399 + EER I+RE+HD LAQ L+ L++ L+ + KR + T + Sbjct: 411 NSHAQLRELTGRLH-AAREEERGRISREIHDVLAQQLTRLKMDLSWIDKRLAQSVDETTR 469 Query: 400 SIMAD----FSQALNDAYRQLRELLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLTLD 454 + + ++ ++ + ++ + T R L L +A+ + Q T + +D Sbjct: 470 QALGEKVRSATELVDSSIGAVQHIATELRPVVLDALGLAAAVEWQVTQFQEHTGVQCQVD 529 Query: 455 CRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIG 514 L L +I++E + N M+HA A+ + VS PD T+ +RDNG GI Sbjct: 530 IDGEEPRLPHDHATGLFRILQETLTNVMRHAGATLVEVSLRMEPD-ILTLSVRDNGRGIT 588 Query: 515 EPKEPEGH-YGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEES 563 + H GL MRERA GG +T GT V ++ + ++ Sbjct: 589 AGELSNMHSIGLLGMRERALLFGGKVTIHGIPEKGTTVVVTMPLSAASQT 638 >UniRef50_C6NZS6 Multi-sensor signal transduction histidine kinase n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6NZS6_9PROT Length = 902 Score = 222 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 56/285 (19%), Positives = 111/285 (38%), Gaps = 32/285 (11%) Query: 307 LPVTMQETVYGELHWQNS----HVSSSEPLLNSVSSMLGRGLYFNQAQKHFQ-------- 354 +P+ + G L ++ LL ++ L G+ + + Q Sbjct: 616 IPLVINGKAIGALTINSADPFTFSKGEVVLLEDLADNLSYGIQTLRTRNEHQSALTFLQK 675 Query: 355 -QLLLMEERAT------------------IARELHDSLAQVLSYLRIQLTLLKRSIPEDN 395 +L L + IAR+LHD L Q+L+ LR+ L++++ N Sbjct: 676 SELSLEQSNQQLRDLTIRREEAREDERKRIARDLHDELGQILTVLRMDLSVMRMQFGASN 735 Query: 396 ATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDC 455 + + ++ + +R++ + R +A + +AL + ++ L Sbjct: 736 PALLDQIKNILSRVDSTIQVVRDVASKLRPGALEAGIVAALEWQVAEFAKRSDIHFDLKI 795 Query: 456 RLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGE 515 + LD + + +I++E++ N +HA A+ + VS D + I D+G G Sbjct: 796 DESNIDLDDERATAIFRIVQESLTNVTRHAAAANVCVSLSRLQDNYI-LEIIDDGRGFDT 854 Query: 516 PKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEG 560 +GL +RER+ L GT+ G GT V++ + Sbjct: 855 EMLSGRTFGLMGVRERSMMLEGTVDIRSSPGKGTHVTVYIPVMKR 899 Score = 43.4 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 22/142 (15%), Positives = 52/142 (36%), Gaps = 5/142 (3%) Query: 155 LAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKT 214 + + + + VF I ++ P++QL ++ I G + P E+ +A+ Sbjct: 283 ILFSLAMLSFVFGVAWLIARRISNPISQLTAVTRAISQGSRVARAELV-GPPEIREVAQE 341 Query: 215 FNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIV 274 FN+M L + EA++ E +L EA + + + + + + + + Sbjct: 342 FNEM---LKIRW-HTEAALRESEINLSEALKIARMGHWEYELITDEFVLNDQYYSLHHTS 397 Query: 275 RDNEAAEYLELNVGENWRISEG 296 + + + G Sbjct: 398 AEKMGGYRMRSAEFSQRLVHPG 419 >UniRef50_UPI0001B54FA0 histidine kinase n=1 Tax=Streptomyces sp. AA4 RepID=UPI0001B54FA0 Length = 423 Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats. Identities = 61/227 (26%), Positives = 106/227 (46%), Gaps = 5/227 (2%) Query: 337 SSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNA 396 +++ Q +Q +++ER +ARE+HD++AQ L+ + QL R + A Sbjct: 199 TALTENAALHAQLLTQARQAGVLDERQRMAREIHDTVAQGLTGIVTQLQAADR--ATEAA 256 Query: 397 TAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDC 455 Q +A D+ + R + R L + LP AL + + + + + K+T D Sbjct: 257 DRQRHLAHVHTLAKDSLTEARRAVQALRPEPLADSHLPEALAGLANRVSDTSGTKVTADV 316 Query: 456 RLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGE 515 L +++V L ++ +EA+ NA KHA A+ I ++ D + IRD+G G Sbjct: 317 EGDARPLLPELEVTLYRVAQEALANAEKHARANRIGITLTYTSD-LIMLDIRDDGRGFAP 375 Query: 516 PKEPEG-HYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGE 561 +G +GL MR+R +R+ G+LT G GT+V + Sbjct: 376 GDRGDGTGFGLEAMRQRVQRVAGSLTIESARGEGTVVHAECPAIPPP 422 >UniRef50_C0Z627 Two-component sensor histidine kinase n=3 Tax=Bacillales RepID=C0Z627_BREBN Length = 382 Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats. Identities = 68/268 (25%), Positives = 125/268 (46%), Gaps = 7/268 (2%) Query: 291 WRISEGQPNPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQ 350 W + L ++ + + E GEL WQ + ++S V+S+ + Sbjct: 113 WEAAMKLGRGMLSYRVPELGVDEV--GELGWQINRLASQWE--EQVASLQRLSNHNAALA 168 Query: 351 KHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALN 410 + + + EER +ARELHD+++Q L + + +KR + ++ A + + Sbjct: 169 EQLKHAAVTEERQRLARELHDAVSQQLFAIAMTTAAMKRLVEKNPQRAAQQIELVEEMAA 228 Query: 411 DAYRQLRELLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVH 469 A ++R LL R LQ L A+ E+LD L + + +LT + L + ++ H Sbjct: 229 AAQAEMRALLLHLRPATLQNKSLKEAILELLDELTRKNTMQLTWEIE-DVEGLPSGIEDH 287 Query: 470 LLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMR 529 L +I++E++ N ++HA A++IAV T + + + D+G+G E YGL M+ Sbjct: 288 LFRILQESLSNTLRHARATQIAVKLFTLQE-QVRLRVTDDGVGFDPDGEKMTSYGLRSMQ 346 Query: 530 ERAERLGGTLTFSQPSGGGTLVSISFRS 557 ER +GG++ G GT + + Sbjct: 347 ERVAEVGGSMEIYSAIGKGTQIEVRIPI 374 >UniRef50_A9B1S5 Multi-sensor signal transduction histidine kinase n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B1S5_HERA2 Length = 665 Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats. Identities = 67/264 (25%), Positives = 116/264 (43%), Gaps = 10/264 (3%) Query: 300 PELPMQILPVTMQETVYGELHWQ-----NSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQ 354 P + LP++++E V G + L +++ + + + Sbjct: 402 PYQTLLALPLSIKEQVLGVVLVATPDRDAPFGPQQLVLAEGLATSAAIAIEQARLYDQAR 461 Query: 355 QLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYR 414 + EER+ +ARELHDS+ Q L + + + + + A + + A + + Sbjct: 462 RAAQAEERSRLARELHDSVTQTLFSMTLTAEAARAQVERNPVRAATQIDRLKAAAHQSLG 521 Query: 415 QLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQI 473 ++RELL R LQ+ + +LR+ + +L Q + L+C L L +I Sbjct: 522 EMRELLLQLRPTPLQEHGIIKSLRDHIASLNAQ-EVAINLECEGEDSVLSPANAAGLYRI 580 Query: 474 IREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEP--KEPEGHYGLNIMRER 531 +EA+ NA++HA A+ + VS A T+ ++DNG G + H GL M ER Sbjct: 581 AQEAIANALRHAQATNVRVSFSFASKST-TLMVKDNGCGFDPDLLERSGRHLGLTSMAER 639 Query: 532 AERLGGTLTFSQPSGGGTLVSISF 555 A LGGTL G GT +++ Sbjct: 640 AGELGGTLDVQSVVGEGTCLTVHL 663 >UniRef50_B2J8K5 Integral membrane sensor signal transduction histidine kinase n=6 Tax=Cyanobacteria RepID=B2J8K5_NOSP7 Length = 421 Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats. Identities = 55/235 (23%), Positives = 106/235 (45%), Gaps = 7/235 (2%) Query: 329 SEPLLNSVSSMLGRGLYFNQAQKHFQQL---LLMEERATIARELHDSLAQVLSYLRIQLT 385 +L+ S + + +++ ++ +EER IARE+HDSL L+ L +QL Sbjct: 188 MNAVLSERHSREKLAIANEKLREYAMRIENQATLEERNRIAREIHDSLGHSLTALNLQLE 247 Query: 386 LLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQ 444 + + A++ +A + + A +R+ ++T R LQ+ L A+ + + Sbjct: 248 TALKLWQSNPGKAETFLATAKELGSKALNDVRQSVSTMRSNPLQEQSLERAIANLAENFH 307 Query: 445 NQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTV 504 L +L ++ + +I +E++ N K+A A+E+ + T GN + Sbjct: 308 RSNGILPICQINLE-YSLPPEINTAIYRITQESLTNITKYAYATEVKLELATIR-GNLRL 365 Query: 505 YIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAE 559 I+DNG G + G +GL+ MR+R LGG + G G ++++ Sbjct: 366 IIQDNGRGFDLGQNTTG-FGLHSMRDRTLALGGDFNINSTPGSGCKITVNIPLMR 419 >UniRef50_C6WV68 PAS/PAC sensor signal transduction histidine kinase n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WV68_METML Length = 499 Score = 222 bits (565), Expect = 4e-56, Method: Composition-based stats. Identities = 56/259 (21%), Positives = 101/259 (38%), Gaps = 4/259 (1%) Query: 301 ELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLME 360 + L + G + W ++ ++ + R Q H Q + Sbjct: 244 DHKWVNLRAIPKVLADGVVQWVGMMINITQSKNEKLELQESRH-ELAQLTAHMNQ-IKEL 301 Query: 361 ERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELL 420 ER IARE+HD L L+ ++I LT + I + +++ + + ++ Sbjct: 302 ERTRIAREIHDDLGGNLTAIKIGLTSIINRIATGLPVSFEQAKGLESIVDNTFEAIHKIS 361 Query: 421 TTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLN 480 + R + + +AL + Q T + + + L +I +E++ N Sbjct: 362 SDLRPNILDLGIVAALEWQAKEFEKQVGVTCTFTTNQADIVVTPDQAITLFRICQESMSN 421 Query: 481 AMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKE-PEGHYGLNIMRERAERLGGTL 539 KHANAS + V G + I DNGIGI +GL M+ER L G+ Sbjct: 422 IAKHANASAVHVDLNLHY-GEIIMKISDNGIGINTADTYKPNSFGLRGMQERVAALYGSF 480 Query: 540 TFSQPSGGGTLVSISFRSA 558 Q +G GT+++++ Sbjct: 481 DIEQLAGQGTVIAVTLPIE 499 >UniRef50_B5JKT1 Histidine kinase domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JKT1_9BACT Length = 729 Score = 221 bits (564), Expect = 5e-56, Method: Composition-based stats. Identities = 69/286 (24%), Positives = 124/286 (43%), Gaps = 5/286 (1%) Query: 274 VRDNEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETVYGELHWQNSHVSSSEPLL 333 V + L V ++ + P+ + +Q P E + L + ++ Sbjct: 443 VLADAPRPLGGLWVPRSFELLLRSPSDLIVVQPPPRWTAERIAWILLAFLVIAVIAVAVV 502 Query: 334 NSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPE 393 S R +A + ++ ER +ARE+HD+L+Q L + +QL L++ E Sbjct: 503 MQASRYRLREQDHRRAMAETEFTAILNERNRVAREIHDTLSQSLGAISVQLELVRTRANE 562 Query: 394 DNATAQSIMADFSQALNDAYRQLRELLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLT 452 +A A S ++ + A + R+ + R L++ DL ALR +L L + T + Sbjct: 563 MSAAALSHLSTAHELARGALAEARDSIWNMRSQVLERCDLSEALRRILTRLTDDTGVRFD 622 Query: 453 LDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIG 512 + L ++ +LL+I +EA+ NA KH S I V + ++D+G+G Sbjct: 623 IKVEGTKRRLPPVVENNLLRIGQEAITNACKHGKPSRIDVGLNFER-RRVCLSVKDDGVG 681 Query: 513 IGEPKE---PEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 + E +GL +RER + LGGT+ G G L+ ++ Sbjct: 682 FAIDEALNGSERSFGLVGLRERVDVLGGTIEVESRPGEGALIVVAV 727 >UniRef50_D1CAA4 GAF sensor signal transduction histidine kinase n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1CAA4_SPHTD Length = 555 Score = 221 bits (564), Expect = 5e-56, Method: Composition-based stats. Identities = 67/307 (21%), Positives = 128/307 (41%), Gaps = 10/307 (3%) Query: 268 RHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQIL--PVTMQETVYGELHWQN-- 323 + + + + ++ E + ++ P+ V G L Q+ Sbjct: 247 EVFRRALEERQPVMVGDVLDAEATPMRSVGHTRTKVRSVIAAPLIQGNEVIGLLSAQSYV 306 Query: 324 --SHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLR 381 + LL ++++ + + + Q L + EER +ARE+HD+LAQ L + Sbjct: 307 PHRYRECDARLLMTIANHAVVAIENARLYRQAQSLAIAEERNRLAREIHDTLAQGLIGII 366 Query: 382 IQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFR-LTLQQADLPSALREML 440 + L L IP+D+ + ++ + R + R L+ L AL + Sbjct: 367 LYLERLDLEIPQDDRRFRPLVERALSLARGNLEEARRSVHDLRAAPLEGRTLVEALAHLA 426 Query: 441 DTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDG 500 + L+ + ++ L L A+++ L ++++EA+ NA KHA +A+ A G Sbjct: 427 EDLRKERLFEVELSVPRALPLLAARVETALFRMVQEAISNARKHAGCKSLAIRLSVAG-G 485 Query: 501 NHTVYIRDNGIGIGEPK--EPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSA 558 T+ + D+G G + +GL+ MRER ++GG T G GTLV + + Sbjct: 486 MVTLEVHDDGRGFEVERVLGEAHRFGLSTMRERITQVGGEFTVESCPGDGTLVRATIPLS 545 Query: 559 EGEESQL 565 + S+ Sbjct: 546 QATHSES 552 >UniRef50_UPI00017893B7 integral membrane sensor signal transduction histidine kinase n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI00017893B7 Length = 357 Score = 221 bits (564), Expect = 5e-56, Method: Composition-based stats. Identities = 62/235 (26%), Positives = 115/235 (48%), Gaps = 3/235 (1%) Query: 331 PLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRS 390 + VSS+ Q + + ++EER +ARELHD+++Q L + + T + R+ Sbjct: 117 RWEDQVSSLQRLSTNNAQLAEQARVTAIVEERQRLARELHDAVSQQLFAISMTATAVGRT 176 Query: 391 IPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLT-LQQADLPSALREMLDTLQNQTSA 449 + +D AQ +A + A ++R LL R L+ L LR+++ L+ + Sbjct: 177 LDKDFDKAQRQVALIEEMSAVAQSEMRALLLHLRPVYLEGKALEQGLRDLITELRIKVPM 236 Query: 450 KLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDN 509 ++T + + L ++ HL +II+EA+ N ++H+ A ++ + + V +RD+ Sbjct: 237 EITFEMD-DDIHLLKGIENHLFRIIQEAMSNTLRHSKAEKMDIRIHRRQN-TVRVMLRDD 294 Query: 510 GIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEESQ 564 G+G + + YGL+ M+ER +GG+L F G GT + I E + Sbjct: 295 GVGFELDDKKQTSYGLSTMQERVTEIGGSLQFITAPGKGTRIEIIVPLINEERKR 349 >UniRef50_C6J7D3 ATP-binding region ATPase domain-containing protein n=2 Tax=Bacillales RepID=C6J7D3_9BACL Length = 356 Score = 221 bits (564), Expect = 5e-56, Method: Composition-based stats. Identities = 65/289 (22%), Positives = 118/289 (40%), Gaps = 20/289 (6%) Query: 291 WRISEGQPNPELPMQILPVTMQETVYGELHWQNSHVSSSE-----PLLNSVSSMLGRGLY 345 + + L + M + G L + + N++ + + + Sbjct: 59 IIGYIAGRRIQGKIDHLHLNMLQVAKGNLSVRMPETADQTFNGVYQEFNNMIDAMEKKMQ 118 Query: 346 FNQAQ--------KHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNAT 397 Q + + ++EER +AR+LHD+++Q L + + + L + + + Sbjct: 119 LLQQLGEQEVVEKEQAAEKAVLEERRRLARDLHDTVSQQLFAIHMAASSLPKVLENNATQ 178 Query: 398 AQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKL--TLD 454 A++++ Q N A +Q+R L+ R L L AL + Q K +D Sbjct: 179 AETVLNQLIQMSNTAQKQMRALIAQLRPMELVGKSLAEALDQWFPDYCRQNGLKGIKDMD 238 Query: 455 CRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIG 514 + + + L II+EA+ N +KHA AS +++S P + I D+G G Sbjct: 239 IQGD---MSEAKEHQLFLIIQEAMANIVKHAGASMVSLSLREGP-RQVVLSISDDGQGFS 294 Query: 515 EPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEES 563 + +G YGL M+ERAE+LGG G GT + + E + Sbjct: 295 STYQKQGSYGLTTMKERAEKLGGNAEIISKPGAGTTIRVHIPKFEEGKG 343 Score = 43.4 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 40/125 (32%), Gaps = 11/125 (8%) Query: 158 GIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQ 217 GI L ++ ++ L ++ G +T + + FN Sbjct: 50 MAGIAVLALIIGYIAGRRIQGKIDHLHLNMLQVAKGNLSVRMPETADQT-FNGVYQEFNN 108 Query: 218 MSSELHKLYRSL----EASVEEKTRD-----LHEAKRRLEVLYQ-CSQALNTSQIDVHCF 267 M + K + L E V EK + L E +R L+ SQ L + Sbjct: 109 MIDAMEKKMQLLQQLGEQEVVEKEQAAEKAVLEERRRLARDLHDTVSQQLFAIHMAASSL 168 Query: 268 RHILQ 272 +L+ Sbjct: 169 PKVLE 173 >UniRef50_B2J8J6 Multi-sensor signal transduction histidine kinase n=1 Tax=Nostoc punctiforme PCC 73102 RepID=B2J8J6_NOSP7 Length = 928 Score = 221 bits (564), Expect = 6e-56, Method: Composition-based stats. Identities = 69/352 (19%), Positives = 136/352 (38%), Gaps = 19/352 (5%) Query: 222 LHKLYRSLEASVEEKTRDL-----HEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRD 276 L LE V ++T +L + + +L ++ ++ Q + Sbjct: 575 LADYNSVLEQQVTQRTLELQREIAERKQAEVALLESETRFRLLAEATFEAIAITEQGILL 634 Query: 277 NEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETVYG------ELHWQNSHVSSSE 330 + E+ E + + + MQ+ G + + + Sbjct: 635 DTNQTCAEMFGYELSELLGMRVMDFTAPEYREQVMQKIRSGDEGIYETVCLRKDGSTFPA 694 Query: 331 PLLNSVSSMLGRGLYFNQ-----AQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLT 385 + V S GR + ++K ++ ++ ER +A+E+HD+LAQ + + + L Sbjct: 695 EIRARVMSYRGRTIRMAAIQDITSRKQAEEATVLAERNRLAQEIHDTLAQAFTVVIVHLD 754 Query: 386 LLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLT-LQQADLPSALREMLDTLQ 444 R + D AQ ++ + + R + R L+ ++ +AL + Sbjct: 755 TASRKLTTDIEVAQKLIKAGRDLAHSGLTEARRSIKALRSQLLEDGNIFNALNRFATQMF 814 Query: 445 NQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTV 504 + ++ + L ++ +LL+I +EA+ NA K+A A EI + + ++ Sbjct: 815 SPSNTHIVCQLIGEIYPLSPDVENNLLRIGQEALTNAFKYAQAGEIQIELAYQ-ESQCSL 873 Query: 505 YIRDNGIGIGEPKEPE-GHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 I+D+G G +GL +M ERAE +G LT G GT VS+ Sbjct: 874 RIKDDGQGFDIASVSVINSFGLLVMSERAECIGAKLTIQSSPGQGTEVSVLV 925 Score = 59.5 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 24/158 (15%), Positives = 60/158 (37%), Gaps = 7/158 (4%) Query: 155 LAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKT 214 + I + I + P+ L ++ + G+++ + +ELG LA++ Sbjct: 363 IVLCIVALIVAVAVGVLILRWIAEPVLALKKSALALAQGEWEKR-IKIERSDELGELARS 421 Query: 215 FNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCF---RHIL 271 FN M+ +L + ++ + L R + L A++ + + R + Sbjct: 422 FNNMADQLQAKFSEMQDLNK---ALLQSETRLKQFLDAVPVAISINDPYGEIYYNNRAVQ 478 Query: 272 QIVRDNEAAEYLELNVGENWRISEGQPNPELPMQILPV 309 +++ + + E ++I + + P LP+ Sbjct: 479 KLISVDLLPSIKPEKIAEYYQIYLAETDYLYPTDELPI 516 >UniRef50_Q9KDL3 Two-component sensor histidine kinase n=1 Tax=Bacillus halodurans RepID=Q9KDL3_BACHD Length = 351 Score = 221 bits (563), Expect = 6e-56, Method: Composition-based stats. Identities = 58/239 (24%), Positives = 105/239 (43%), Gaps = 3/239 (1%) Query: 321 WQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYL 380 + +E + V+S+ + Q+ ++ + EER +AR+LHD+++Q L + Sbjct: 111 LTDRLNRMAERVEEQVASLQRLSSERAKMQETVKKAAVTEERQRLARDLHDAVSQQLFAI 170 Query: 381 RIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLT-LQQADLPSALREM 439 + +K+++ E Q M + N A ++R LL R L+ L + + Sbjct: 171 SMMTAAIKQNLHEATEEVQQQMDVVEKMANTAQAEMRALLLHLRPAELEGKSLQQGVEYL 230 Query: 440 LDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPD 499 L L+ + K+T P L ++ L ++++EA+ N ++HA A + V + Sbjct: 231 LHELEQKQGFKITKRLE-PMDELPKGVEDQLFRMLQEAISNILRHAQAHHVEVRFWQT-E 288 Query: 500 GNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSA 558 + + D+G+G KE G YGL M ER +GG L G GT + Sbjct: 289 RQVRLKLIDDGVGFDVQKETHGSYGLQTMHERINEIGGVLDIVSAPGKGTQLEAKIPIT 347 Score = 43.7 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 33/258 (12%), Positives = 74/258 (28%), Gaps = 18/258 (6%) Query: 105 NWLEMNNRLSKGDLPWYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIGIFTL 164 W + N L + + I + K ++ + I + + + + Sbjct: 11 QWQFIRNSLIVSFFAVLFTVVIMTYDDIAGLTMLFD-----KQIVRLPILVPILLSMIAI 65 Query: 165 VFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHK 224 + L+Q++ E G F +++ +EL L N+M+ Sbjct: 66 GLIAGMMQSLPIKRKLDQILHGVLLYERGTFS-HQIESEGEDELAELTDRLNRMAE---- 120 Query: 225 LYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIV-RDNEAAEYL 283 VEE+ L + + + ++ R + V + A + Sbjct: 121 -------RVEEQVASLQRLSSERAKMQETVKKAAVTEERQRLARDLHDAVSQQLFAISMM 173 Query: 284 ELNVGENWRISEGQPNPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRG 343 + +N + + ++ + + L L L Sbjct: 174 TAAIKQNLHEATEEVQQQMDVVEKMANTAQAEMRALLLHLRPAELEGKSLQQGVEYLLHE 233 Query: 344 LYFNQAQKHFQQLLLMEE 361 L Q K ++L M+E Sbjct: 234 LEQKQGFKITKRLEPMDE 251 >UniRef50_D2SEJ2 Integral membrane sensor signal transduction histidine kinase n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2SEJ2_9ACTO Length = 372 Score = 221 bits (563), Expect = 6e-56, Method: Composition-based stats. Identities = 54/242 (22%), Positives = 97/242 (40%), Gaps = 3/242 (1%) Query: 317 GELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQV 376 G + + + + + ++L ER +AR++HD L Sbjct: 131 GAAVFTAVVTALLQREQRARVELAEANEQLRGYAAQAEELATTRERNRLARDIHDGLGHH 190 Query: 377 LSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSAL 436 L+ +++Q+ + + D A +++A Q +DA ++R + R L AL Sbjct: 191 LTVVQMQVQAARAQLSSDPERADAVLAKAQQQASDALAEVRRSVAALRGPRTAPPLRVAL 250 Query: 437 REMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVT 496 + L+ L A+ + L + +E + N KHA AS V+ Sbjct: 251 EALTAEFSA-AGVPAPLEVVGTERPLPAEAEESLFRSAQEGLTNVGKHATASSARVTLTY 309 Query: 497 APDGNHTVYIRDNGIGIGEPKEP--EGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSIS 554 DG + +RD+G G+ G +GL ++ERA R GG L+ + GGGT + + Sbjct: 310 GDDGTVRLRVRDDGRGLPAGGHGPYPGGFGLVGLQERAARAGGQLSVASVPGGGTELLVE 369 Query: 555 FR 556 Sbjct: 370 VP 371 >UniRef50_Q01N85 Integral membrane sensor signal transduction histidine kinase n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01N85_SOLUE Length = 462 Score = 221 bits (563), Expect = 7e-56, Method: Composition-based stats. Identities = 83/442 (18%), Positives = 137/442 (30%), Gaps = 32/442 (7%) Query: 145 RKMLLVVAISLAGGIGIFTLVFFTLRRI------------RHQVVAPLNQLVTASQRIE- 191 R+ ++ GG+ +V R + L+ L +I Sbjct: 17 RRPSWLILSLGFGGLLTCIVVAAVGTLAALDRVRSNEVHSRKMFLERLSALDQIRAQIYL 76 Query: 192 ----HGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRL 247 F P + L + + R+LE E L + Sbjct: 77 SGTYVRDFLLSPDPLTAQAQAAHLGPLERDTHNAIEAYRRNLEPEEREPFLALRKEIEAY 136 Query: 248 EVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQIL 307 + + D F + A L + + + + Q Sbjct: 137 WQVLDTTVGWTQQDRDRLRFSFFYNELVPRRTA---MLQIADRIALVNERGLTRSEGQSA 193 Query: 308 PVTMQETVYGELHWQNSHVSSSEPLLNSVS------SMLGRGLYFNQAQKHFQQLLLMEE 361 Y L + + L +++ L Q E Sbjct: 194 SAAGNLRRYLMLTFAGTLGGGLILALVTIAFTLRLERELELRRSDLQELSTLLLRAQENE 253 Query: 362 RATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLT 421 R +ARELHD + Q LS + ++ + E A S + Q+R+L Sbjct: 254 RRALARELHDEIGQSLSAILMETEGAE--CAERRADLSSHLDSIKGLAEKTVNQVRDLAL 311 Query: 422 TFRLT-LQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLN 480 R + L L AL +T + + L + + + ++++EAV N Sbjct: 312 LLRPSMLDDLGLAPALNWHARETSKRTGLNVVVSADDAIDDLPDEHRTCIYRLVQEAVNN 371 Query: 481 AMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLT 540 A++HANA + VS V +RDNG G GL M ER RLGG L Sbjct: 372 AVRHANARTVDVSVRKEGH-KVNVTVRDNGAGFDT--RFLRGLGLLGMEERVRRLGGRLK 428 Query: 541 FSQPSGGGTLVSISFRSAEGEE 562 + G GTLV + ++ E+ Sbjct: 429 ITSEPGRGTLVHAALPLSDLEK 450 >UniRef50_Q747N5 Sensory box histidine kinase n=2 Tax=Geobacter RepID=Q747N5_GEOSL Length = 518 Score = 221 bits (563), Expect = 7e-56, Method: Composition-based stats. Identities = 74/392 (18%), Positives = 140/392 (35%), Gaps = 28/392 (7%) Query: 183 LVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHE 242 L ++RI + + + L+ + + + ++T L Sbjct: 122 LEMEARRIRLNGRPAILGVCHDRTDCKLIGEAMH----------------ISQETFRLV- 164 Query: 243 AKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNV--GENWRISEGQPNP 300 + +Y + N + V + + + E + Sbjct: 165 LDAMHDSVYVVGRDYNVIYANRAMRAGAYGDVSSDPCYRICRGCSEPCPDCTLEEVLSSD 224 Query: 301 ELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQL---L 357 + + + Y + S P V + Q + Q Sbjct: 225 KPVCREFFDEKRNAWYSTIELAVRIPGMSAPAKLGVRRDITARKEAEQRSRMLSQRLLHA 284 Query: 358 LMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLR 417 ER ++RELHD L Q+L+ L+I L + + + Q + S++LN++ +R Sbjct: 285 QESERKRLSRELHDDLGQLLNALKIGFDTLAEDLRQPSHDVQDRLWYLSESLNNSIHTIR 344 Query: 418 ELLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLTLDC-RLPTLALDAQMQVHLLQIIR 475 L + L++ L +R+ S + L C + + L++ +++L +I + Sbjct: 345 RLCAGLHPSTLERLGLAETIRQQCTQAATTHSLDIELKCGTMLGVRLESDTEINLYRIFQ 404 Query: 476 EAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGI---GEPKEPEGHYGLNIMRERA 532 EA+ N +KHA+A+ + V V A + I DNG G + H GL M ER Sbjct: 405 EALHNVVKHADATRVMVRLV-ASHPTVRLQIEDNGGGFSMEDYAELSGHHLGLISMAERV 463 Query: 533 ERLGGTLTFSQPSGGGTLVSISFRSAEGEESQ 564 E LGGT + G GT V++ + + Sbjct: 464 ELLGGTFQIASLPGLGTAVTVEVPFRKAPPGR 495 >UniRef50_C5CVV4 Histidine kinase n=2 Tax=Burkholderiales RepID=C5CVV4_VARPS Length = 456 Score = 221 bits (563), Expect = 7e-56, Method: Composition-based stats. Identities = 62/283 (21%), Positives = 109/283 (38%), Gaps = 12/283 (4%) Query: 289 ENWRISEGQ--PNPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSML-----G 341 NW + G + E MQ L M V L W + ++++ +L Sbjct: 170 WNWMVGTGLYLDDIETTMQALDRQMSANVTTTLLWIAGIAALCLGVVSATGLLLNLSEHR 229 Query: 342 RGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSI 401 + EER +ARELHD +Q L ++ + ++ + A Sbjct: 230 TAEAKLRLLARRVVQSQEEERGHLARELHDGTSQTLVSAKLLIESAVDALDRERQPAPPA 289 Query: 402 MADFSQALNDAYRQLRELLTTFRLTL-QQADLPSALREMLDTLQNQTSAKLTLDCRLPTL 460 ++ Q LND+ ++R + R L LP+AL + D + + ++ Sbjct: 290 LSKALQRLNDSLIEVRRISHRLRPALLDTLGLPAALERLGDEFAEEGAIDASIMIEGEAF 349 Query: 461 ALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPK--- 517 L + + L ++ +EA+ N KHA A + ++ + + + I D+G+G Sbjct: 350 ELSQEAKTALFRVTQEALTNVRKHAQAHRVHIALGFSDEDGVRLSIGDDGVGFDVEAMQL 409 Query: 518 EPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEG 560 + GL MRER E +GG L G GT + + Sbjct: 410 DARRGIGLRNMRERMESIGGRLDVQSGEG-GTTIVAEVPARSA 451 >UniRef50_Q0B944 Multi-sensor signal transduction histidine kinase n=29 Tax=Burkholderiaceae RepID=Q0B944_BURCM Length = 707 Score = 220 bits (562), Expect = 8e-56, Method: Composition-based stats. Identities = 51/239 (21%), Positives = 98/239 (41%), Gaps = 9/239 (3%) Query: 328 SSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLL 387 + L + + Q + EE+ IARELHD L Q L+ L++ L+++ Sbjct: 461 RDITERQRAENALKQSREELRELSANLQNVREEEKTRIARELHDDLGQQLTALKMDLSVI 520 Query: 388 KRSI-----PEDNATAQSIMADFSQALNDAYRQLRELLTTFRLT-LQQADLPSALREMLD 441 ++ + + N S + + ++ +R + R L L A+ + + Sbjct: 521 EQQLRAPGRAQPNDDVLSHLQGMRRLIDATVASVRRIAADLRPVMLDDLGLVPAIEWLAN 580 Query: 442 TLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGN 501 N+ + L + L +I++EA+ N +HA+A+ +A+ +G Sbjct: 581 DFTNRYGIDVERHIETGGLTFTSAGATTLFRIVQEALTNVARHADATRVALRLD-IEEGF 639 Query: 502 HTVYIRDNGIGIGEP--KEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSA 558 + + DNG G + +GL +RERA LGG +T G ++++F Sbjct: 640 CVLRVADNGRGAAPGGSAHEDKSFGLIGIRERAHMLGGNVTIDTALARGFSITVAFPLG 698 >UniRef50_D1VK31 Histidine kinase n=1 Tax=Frankia sp. EuI1c RepID=D1VK31_9ACTO Length = 459 Score = 220 bits (562), Expect = 9e-56, Method: Composition-based stats. Identities = 60/255 (23%), Positives = 101/255 (39%), Gaps = 9/255 (3%) Query: 309 VTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARE 368 V Q T G + + + + +SM Q ++ + EER +A E Sbjct: 191 VMEQNTERGRMIAELAETNRQLQ-----ASMDENAGLHAQLLTQAREAGVAEERGRLAGE 245 Query: 369 LHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRL-TL 427 +HD+LAQ L+ + QL +R D A + + R + R L Sbjct: 246 IHDTLAQGLAGILTQLEAARR-AHADPAEWSRHIELADGLARANLTEARRSVRALRPEQL 304 Query: 428 QQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANA 487 +QA L AL ++ +T + A+ ++ + +I +EA+ N +HA+A Sbjct: 305 EQASLSDALADLARDWSRRTQVPAEAVTTGVPVRAPAETEMAVFRIAQEALANVARHAHA 364 Query: 488 SEIAVSCVTAPDGNHTVYIRDNGIGIGEPK-EPEGHYGLNIMRERAERLGGTLTFSQPSG 546 + V+ D + + D+G G P +G+ MR RAE + GTL+ G Sbjct: 365 TRARVTLSYLDD-TLLLDVADDGAGFHPGAGAPPARFGVTGMRRRAESVAGTLSIESAPG 423 Query: 547 GGTLVSISFRSAEGE 561 GT V+ F Sbjct: 424 DGTTVNAVFPLTPTP 438 >UniRef50_A6TSW3 Histidine kinase n=2 Tax=Alkaliphilus RepID=A6TSW3_ALKMQ Length = 392 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 72/370 (19%), Positives = 152/370 (41%), Gaps = 19/370 (5%) Query: 203 NLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQA--LNTS 260 + +E+ +A+ + +L + + + +EK L + LE+L + S+ + S Sbjct: 29 DGKSEVFEIAENARKQCHDLQQELKEM----KEKASHLIKEVDHLELLERQSRRKLVLVS 84 Query: 261 QIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETVYGELH 320 + ++ + A + L + + +L M++ L Sbjct: 85 KEFSKYAEEDIKEAYEKANAIQIHLILKRQEEKDLIKRRSDLEMRLKSAYEGLQRAENLA 144 Query: 321 WQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLL---LMEERATIARELHDSLAQVL 377 ++ L+ + L Q ++ + + EER +ARE+HD AQ L Sbjct: 145 FKIGIALD---FLSGNLQDISHTLEDMQEKQFLGRRIIRVQEEERHRVAREIHDGPAQSL 201 Query: 378 SYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSAL 436 + + I+ + ++ + D ++ + + + L D + +R+++ R +L L L Sbjct: 202 ANVVIKAEICEKLMDIDLEKSREEIQNLKKILRDGIKDIRKIIYNLRPMSLDDIGLIPTL 261 Query: 437 REMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVT 496 + ++T + +T + L+ D+ + + +II+EA+ N KHA A+ I + Sbjct: 262 KRYVETFEEETQINMILNILSEDPIKDSIKNLSIFRIIQEALNNVRKHARATNINIKIEI 321 Query: 497 APDGNHTVYIRDNGIGIG-----EPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLV 551 + ++++DNGIG P+ EG +GL M+ER L G + GT + Sbjct: 322 TQ-TDIRLHVQDNGIGFDTENIKVPQNYEGGFGLLNMKERVGLLDGKINIKSKINQGTKL 380 Query: 552 SISFRSAEGE 561 I + E Sbjct: 381 MIYISNEVEE 390 >UniRef50_C8WYI2 Histidine kinase n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WYI2_ALIAD Length = 223 Score = 220 bits (560), Expect = 1e-55, Method: Composition-based stats. Identities = 55/208 (26%), Positives = 97/208 (46%), Gaps = 4/208 (1%) Query: 356 LLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQ 415 +L EER IAR+LHD Q L+ + ++L +LK + + A+ + + + +A ++ Sbjct: 17 RMLEEERRRIARDLHDGPVQALTNISMKLEVLKHMLDSNPQIAKDQVDQLHRRVTEAVKE 76 Query: 416 LRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRL--PTLALDAQMQVHLLQ 472 +R L+ R + + L A + + + + + + + QV L + Sbjct: 77 IRALIYDLRPLAVDEVGLIEATKALCSQFEKNWGISTSFVVQDGVTSAEITPAKQVALYR 136 Query: 473 IIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERA 532 +I+E + N KHA A+ V + + + + ++D+G+G P GHYGL M+ERA Sbjct: 137 LIQEILNNIKKHARATTTVVEFLR-DESDLIITVKDDGVGFDTNYVPPGHYGLIGMKERA 195 Query: 533 ERLGGTLTFSQPSGGGTLVSISFRSAEG 560 E LGG L G G+ I G Sbjct: 196 EFLGGRLEIHSIIGQGSTFIIRIPMYTG 223 >UniRef50_A3NKQ6 Signal transduction histidine kinase n=29 Tax=Burkholderia RepID=A3NKQ6_BURP6 Length = 492 Score = 220 bits (560), Expect = 1e-55, Method: Composition-based stats. Identities = 77/408 (18%), Positives = 147/408 (36%), Gaps = 23/408 (5%) Query: 175 QVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTF------NQMSSELHKLYRS 228 V+ L+ L Q I+ G D E LL++ +++++ L Sbjct: 86 LVLTGLDDLSVGLQAIQEGAQDY---LLKKRVETPLLSRAIRYAMERHRVAAALAASEER 142 Query: 229 LEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVG 288 + +V + L + + +Y + H + R++ + L+ + Sbjct: 143 FQLAVSGASAGLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDLKRVLD 202 Query: 289 ENWRISEGQPNPELPMQILPVTMQETV---YGELHWQNSHVS-------SSEPLLNSVSS 338 E + ++ ++ + G+ W ++ Sbjct: 203 ALKAHLEHRDTYDVEYRVRTRSGDYRWIQSRGQALWNSAGEPYRMVGWIMDVTDRKRDED 262 Query: 339 MLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSI-PEDNAT 397 L + Q + EE+ IARELHD L Q L+ L++ +TL+ + A+ Sbjct: 263 ALRVSREELRRLSAHIQSIREEEKTRIARELHDDLGQQLTALKMAVTLVDNELKDAGWAS 322 Query: 398 AQSIMADFSQALNDAYRQLRELLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLTLDCR 456 S + + + +R + R L L +A+ + + +T Sbjct: 323 RTSRLPNVYALIGQLLDSVRRIAADLRPVMLDDLGLMAAIEWLTHEFVERYRIPVTSRIE 382 Query: 457 LPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEP 516 +A + +I++EA+ N +H+ A+E+ + + + N V I DNG G Sbjct: 383 ADDIAFTRGSATEVFRIVQEALTNVARHSEATEVTLDIIR-DEPNCIVRIADNGCGTARD 441 Query: 517 KEPEGH-YGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEES 563 P H GL MRERA RLGG + G G ++ + A E + Sbjct: 442 TRPNRHSLGLLGMRERAARLGGEIRIDTAPGRGFALTATLPLAVIEAT 489 >UniRef50_B5JFN8 Histidine kinase domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JFN8_9BACT Length = 403 Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 58/242 (23%), Positives = 102/242 (42%), Gaps = 6/242 (2%) Query: 318 ELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQK-HFQQLLLMEERATIARELHDSLAQV 376 + + S +++ L +A ++L +ER IARE+HD++ Sbjct: 166 MMFYIFRRERESRSKAVALTLDLDEANEKLRAFSGQIEELAATQERNRIAREIHDTIGHS 225 Query: 377 LSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFR-LTLQQADLPSA 435 L+ + +QL K I D A+ + + +R + + R L LP A Sbjct: 226 LTVVNMQLETSKALIDSDKEKAKRFLEKAQEVTRQGLTDVRSSVASLRSSPLDGKSLPGA 285 Query: 436 LREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCV 495 L M+ K + + AL+ + L + +EA+ N KHA+ASE+ +S Sbjct: 286 LEGMMSA-SFGGGVKTRFELKGEVAALNPASEAALYRSAQEALTNVRKHADASEVKLSLD 344 Query: 496 TAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 + + + DNG G ++ EG +G+ +RER + L G + S G G +S+S Sbjct: 345 FSFPECVKLVVADNGKG---SEKVEGGFGIMGIRERIQLLDGEMRVSTSPGQGLELSLSL 401 Query: 556 RS 557 Sbjct: 402 PR 403 >UniRef50_D2ARZ7 Histidine kinase n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2ARZ7_STRRD Length = 397 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 57/251 (22%), Positives = 96/251 (38%), Gaps = 13/251 (5%) Query: 318 ELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLM----EERATIARELHDSL 373 + + E ++ + +L ER +A E+HD+L Sbjct: 154 VIFFSAVFGIWMERIMRQSEERAALIAELEAQRAEVSRLSAERGALAERERLAGEIHDTL 213 Query: 374 AQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADL 432 AQ + + + + + D A ++ Q + + R L+ L + L Sbjct: 214 AQGFTSIIMLIQAAE--AQSDPAR---HLSLAVQTARENLAEARALIAALSPAPLDGSTL 268 Query: 433 PSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAV 492 AL + L+ +T R + L +V LL+ +EA+ N KHA A + V Sbjct: 269 DEALVRLAGRLREETGIATAFSLRGESRPLPPPTEVVLLRAAQEALANVRKHAAAGRVEV 328 Query: 493 SCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVS 552 S P+ + IRD+G G YGL MR R E++GGTLT + GGT + Sbjct: 329 SASYGPE-TVALEIRDDGRGFDPAVAE--GYGLRGMRARVEQVGGTLTLTSSPAGGTTLE 385 Query: 553 ISFRSAEGEES 563 + + + Sbjct: 386 AVLPAEQPDRG 396 >UniRef50_UPI0001B54039 histidine kinase n=1 Tax=Streptomyces sp. AA4 RepID=UPI0001B54039 Length = 443 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 65/268 (24%), Positives = 110/268 (41%), Gaps = 12/268 (4%) Query: 303 PMQILPVTMQETVYG---ELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQ-AQKHFQQLLL 358 L + + G + + +L+ +++ + ++ + Sbjct: 168 VWISLVIVQTAAISGGGAVFAAVGRQNAERKRMLDQLAAAEAENRGLQRQLLAQAREAGV 227 Query: 359 MEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRE 418 ++ER +++E+HD+LAQ + + QL +D A + +A +Q + R Sbjct: 228 LDERQRLSQEIHDTLAQGFTGIITQLEAAA-QARDDTAEWERHLAAATQLARENLTAARR 286 Query: 419 LLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREA 477 + R L+ A LP AL E+ +T + L +++ LL+I +EA Sbjct: 287 SVAALRPEPLEAATLPEALAEVARLWSERTGVPAEFSTTGTAVPLHPELEATLLRITQEA 346 Query: 478 VLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIG-----EPKEPEGHYGLNIMRERA 532 + N KHA AS ++ D T+ RD+G+G P EG +GL MR RA Sbjct: 347 LSNVAKHARASRAGITLSYMGD-EVTLDARDDGVGFDPAHPPAPPSAEGGHGLPGMRRRA 405 Query: 533 ERLGGTLTFSQPSGGGTLVSISFRSAEG 560 ERL G L GGGT VS + Sbjct: 406 ERLAGALHVESEPGGGTAVSARLPAIPA 433 >UniRef50_UPI00017449FC GAF domain protein n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017449FC Length = 690 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 71/254 (27%), Positives = 111/254 (43%), Gaps = 4/254 (1%) Query: 313 ETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQ-KHFQQLLLMEERATIARELHD 371 T+ L ++S L + + R + ++ + +ER IARELHD Sbjct: 431 WTLRRTLWALGLLGAASLVFLGWAALLRQRVTEQTRIIGTQIERSAVKDERERIARELHD 490 Query: 372 SLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFR-LTLQQA 430 ++ Q L+ L IQL ++ I A + Q L + R + R L+ Sbjct: 491 TIEQELAGLSIQLRNARQRIATAPEQASRSLGLAEQMLRHCREEARTSIRDLRSTALELR 550 Query: 431 DLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEI 490 L AL EML L + A +L+ + L ++HLL+I EAV NA +HA+ I Sbjct: 551 GLHGALEEMLTPLATEAGAHFSLEVKGEPYHLAGPSEIHLLRIAHEAVANAARHASPRLI 610 Query: 491 AVSCVTAPDGNHTVYIRDNGIGIGEPK-EPEGHYGLNIMRERAERLGGTLTFSQPSGGGT 549 V+ P+ ++ I D+G G P GH+G+ +RER +L GTL G GT Sbjct: 611 QVTIEFTPE-TVSLEIEDDGCGFDTDAPAPRGHFGMLGIRERVNKLQGTLQTHSEPGKGT 669 Query: 550 LVSISFRSAEGEES 563 + + S + S Sbjct: 670 RIHVVVPSEVAKRS 683 >UniRef50_A8LRP9 Integral membrane sensor signal transduction histidine kinase n=28 Tax=Rhodobacterales RepID=A8LRP9_DINSH Length = 480 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 107/246 (43%), Gaps = 4/246 (1%) Query: 315 VYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLA 374 G + + LL ++ +A EER +ARELHDS++ Sbjct: 218 WIGAITLAALLAVFASGLLINIRE-RRLADAKLKALTQRVLDTQEEERGRVARELHDSIS 276 Query: 375 QVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADLP 433 Q+L +R L L +R + +A AQ + LN A +++R + R L L Sbjct: 277 QLLVGIRYALELARRRVQTGDARAQENIEKGIDGLNGAIQEVRRISRDLRPGQLDDLGLG 336 Query: 434 SALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVS 493 A++++ + +T + + + LD + ++ L +I +EA+ N +HA A+E+ + Sbjct: 337 PAIQDLAEEFTKRTGIRAEMKTVVFRNRLDPEAKIALYRIAQEALTNIERHAQATEVHLD 396 Query: 494 CVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSI 553 G T+ + DNG G+ G GL M+ER E+L GTL GT + Sbjct: 397 LFGHQTGA-TLRVADNGRGLANVSRGAGGLGLRNMQERVEQLDGTLQVFSSE-AGTRIDA 454 Query: 554 SFRSAE 559 + + Sbjct: 455 TVPLSH 460 >UniRef50_C0GKL6 Histidine kinase n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GKL6_9FIRM Length = 379 Score = 219 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 62/380 (16%), Positives = 140/380 (36%), Gaps = 9/380 (2%) Query: 184 VTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEA 243 + ++++ ++ ++ ++ + Q EL L+ + + + Sbjct: 1 MQEIKQLDEAIRNTISAVQKGREDIMSISGSARQQRDELLAKLVDLKGEILDVITAVDRL 60 Query: 244 KRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELP 303 +R ++ + ++ +Q + L+L+ Q +L Sbjct: 61 EREEKL--ARIHLMEVNRNFNKYTEKDIQQAYEEAQHIQLQLSQMREREAQHRQRRDQLE 118 Query: 304 MQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERA 363 + + V +L Q ++ + Q EER Sbjct: 119 IMVRRVNETVERAKKLETQVGMALELISGGLQGVTVKLDEIQLRQQVSLRIIKAQEEERL 178 Query: 364 TIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTF 423 +ARE+HD AQ ++ + ++ + ++ + + ++ + D + ++ +++R+++ Sbjct: 179 RVAREIHDGPAQSMANVVLRAEICEKLMSVEPDKVRAELHDLKDMVKESLQEVRKIIFDL 238 Query: 424 RL-TLQQADLPSALREMLDTLQNQTSAKLTLDC-RLPTLALDAQMQVHLLQIIREAVLNA 481 R L + LR + LQ +T + L L + ++V + +I++E++ N Sbjct: 239 RPMVLDDLGIVPTLRRFIAELQKRTDMNIELVVLGGEEQRLASVLEVAIFRIVQESLNNI 298 Query: 482 MKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEG----HYGLNIMRERAERLGG 537 KHA A + P G + I DNG G + + +GL MRER E L G Sbjct: 299 YKHAEAKRCVIKLEILP-GRINISIADNGRGFDTERTMQNMDVDCFGLLGMRERVELLDG 357 Query: 538 TLTFSQPSGGGTLVSISFRS 557 + GT + +S Sbjct: 358 QIKIVSKPEKGTEIHVSIPI 377 >UniRef50_Q1AVR5 Periplasmic sensor signal transduction histidine kinase n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AVR5_RUBXD Length = 407 Score = 219 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 47/247 (19%), Positives = 103/247 (41%), Gaps = 4/247 (1%) Query: 315 VYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLA 374 V G + ++ + + + ++L + EER IARE+HD++ Sbjct: 163 VIGICTLAVESMRRQAHAQELLAELEEAHAELRRYAERARELAVSEERNRIAREIHDAVG 222 Query: 375 QVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTF-RLTLQQADLP 433 L+ + +QL + + D A +A + ++A + R + +++ Sbjct: 223 HHLTVVNVQLEAAGKLLARDPGRAAEAVARAKSSASEALSEARRAVRALKPPSMEGRAGL 282 Query: 434 SALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVS 493 AL +++ + + ++ + L +++ L + ++E + NA++H+ A + V Sbjct: 283 RALDDLVREF-HGSGVAVSFEVSGERRPLPPEVEFILYRALQEGLTNALRHSGADRVEVR 341 Query: 494 CVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSI 553 + + +RD+G G E G +GL +RER GG ++ GGG + + Sbjct: 342 LDLCGEA-VRLSVRDDGRGTSEGAS-GGGFGLEGLRERVAEAGGRISAGDARGGGFALEV 399 Query: 554 SFRSAEG 560 + G Sbjct: 400 ELPAGAG 406 >UniRef50_UPI000169369A sensor histidine kinase n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI000169369A Length = 224 Score = 219 bits (557), Expect = 4e-55, Method: Composition-based stats. Identities = 62/217 (28%), Positives = 106/217 (48%), Gaps = 3/217 (1%) Query: 342 RGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSI 401 + Q + + ++EER +ARELHD+++Q L + + T R++ +D AQ Sbjct: 1 MSTHNAQLAEQARVSAIVEERQRLARELHDAVSQQLFAISMTATAALRTLDKDFDKAQRQ 60 Query: 402 MADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTL 460 + + A ++R LL R L+ L L ++L L+ + ++ D + Sbjct: 61 IFLIEEMSAVAQSEMRALLLHLRPVHLEGNPLAVGLHKLLQELKAKVPIEIVEDLD-EEI 119 Query: 461 ALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPE 520 L ++ HL +I++EA+ N+++H+ AS++ V DG + IRDNGIG + Sbjct: 120 RLPKGIEDHLFRIVQEALSNSLRHSKASKLEVKLHHRGDG-LRLSIRDNGIGFEIDNTKQ 178 Query: 521 GHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRS 557 YGL+ MRER +GG+L G GT + I Sbjct: 179 ASYGLHTMRERVNEIGGSLQIITAPGKGTRIEIRVPI 215 >UniRef50_B1ZSZ0 Histidine kinase n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZSZ0_OPITP Length = 1031 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 64/264 (24%), Positives = 115/264 (43%), Gaps = 9/264 (3%) Query: 303 PMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLY--FNQAQKHFQQLLLME 360 + P+ + ++G + + + L + + L Q Q+ + + Sbjct: 768 VLASYPILLAALLFGLVRFAMRRAEARNAALEQLVAQRTGELQTTMRQLQQETRTSATLA 827 Query: 361 ERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELL 420 ER +A E+HDSL Q + L +QL + + +S +A + + ++R + Sbjct: 828 ERNRLAGEIHDSLEQGFTGLTLQLETTA-AFSTCSPEVKSGLAVALNMVAFSRNEVRHAV 886 Query: 421 TTFR-LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVL 479 L ADL +ALR++L + L + L + ++ HLL+I +EA+ Sbjct: 887 RDMHSPILASADLETALRQILAQVAPHADYA-RLRIEGSPVRLGSSVEHHLLRIAQEAIA 945 Query: 480 NAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPK---EPEGHYGLNIMRERAERLG 536 NA+KHA AS +AV+ + IRD+G G GH+GL R RA ++G Sbjct: 946 NAVKHAAASHLAVTLAFRK-SEVELDIRDDGRGFDPAAVLNAGIGHFGLPSFRGRANKIG 1004 Query: 537 GTLTFSQPSGGGTLVSISFRSAEG 560 GT+ + G GT +++ + Sbjct: 1005 GTVEITSRPGAGTRITVRVPVEKA 1028 >UniRef50_C3PKA7 Two-component system sensor kinase n=2 Tax=Corynebacterium RepID=C3PKA7_CORA7 Length = 419 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 66/219 (30%), Positives = 102/219 (46%), Gaps = 8/219 (3%) Query: 346 FNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIP-EDNATAQSIMAD 404 +Q + + + ER IA E+HD+LAQ LS +++ L R + ED AQ + Sbjct: 197 RSQLVESERTAGMTAERQRIAHEIHDTLAQGLSSIQMLLHAADRDLDQEDIPKAQERIEL 256 Query: 405 FSQALNDAYRQLRELLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALD 463 + D + R ++ + L + L +A+ M D +++D T L Sbjct: 257 ARRTAADNLHEARAMIAALQPAALSETSLGAAMTRMADNFAATGGVDVSVDVEGDTQQLP 316 Query: 464 AQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPK-----E 518 +++ LL+I + A+ N +KHA+AS+ V+ APD V + DNG G Sbjct: 317 MKVEAALLRIAQGAMGNVVKHAHASKARVTVTYAPD-EVRVDVVDNGQGFDVSAVENKPA 375 Query: 519 PEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRS 557 GH GL+ MR RAE LGG + G GT VS+S Sbjct: 376 GLGHIGLSAMRRRAEELGGEVVIESTPGSGTAVSVSVPL 414 >UniRef50_Q5WCK2 Two-component sensor histidine kinase n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WCK2_BACSK Length = 354 Score = 218 bits (556), Expect = 5e-55, Method: Composition-based stats. Identities = 67/273 (24%), Positives = 110/273 (40%), Gaps = 12/273 (4%) Query: 298 PNPELPMQILPVTMQETVYGELHWQNSHVSS-SEPLLNSVSSMLGRGLYF-NQAQKHFQQ 355 + + G++ SS + +S R Q + Q Sbjct: 80 RGALQQLSDGHMEKGREQAGQMSADFKEASSLIIDMERRMSKQADRSQKLMEQWAEKESQ 139 Query: 356 L---LLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDA 412 L ++ +ER IARELHDS++Q L + L+ +D Q + +NDA Sbjct: 140 LKSEIVSQERNRIARELHDSVSQQLYAASMLLSAAVNGKNQDIEALQKRCEQIEKVVNDA 199 Query: 413 YRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLL 471 +R LL R L+ + +++D+L + + R+ L ++ L Sbjct: 200 QNDMRALLLQLRPIQLEDQSFKEGVEQLVDSLAEKHPL--SFSVRIADAPLSPGIEDQLF 257 Query: 472 QIIREAVLNAMKHANASEIAVSCVTAP-DGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRE 530 +I +EA+ NA++HA A +S D + I D+G+G + G YGLN + E Sbjct: 258 RISQEAIANALRHAEAK--EISLYYDKFDQFALLKITDDGVGFDRKEHT-GGYGLNSIEE 314 Query: 531 RAERLGGTLTFSQPSGGGTLVSISFRSAEGEES 563 RAE +G T G GT V + +G E Sbjct: 315 RAEEIGATTRIVSVPGQGTSVEVKVPIVKGGEE 347 >UniRef50_Q01NC5 Integral membrane sensor signal transduction histidine kinase n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01NC5_SOLUE Length = 437 Score = 218 bits (555), Expect = 6e-55, Method: Composition-based stats. Identities = 50/270 (18%), Positives = 109/270 (40%), Gaps = 9/270 (3%) Query: 296 GQPNPELPMQILPVTMQETVYGELHWQNSH----VSSSEPLLNSVSSMLGRGLYFNQAQK 351 + +L ++ L + + + S + ++ + + Sbjct: 168 QLHDGKLRVEALFSQYGRRLAVTIALVIGLGLVLAAFSIRKILALENASSASQEALKHLS 227 Query: 352 HFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIP-EDNATAQSIMADFSQALN 410 +ER +I+RELHD + Q L+ + +++ L + I D + + A+ + + Sbjct: 228 ARLVEAQEDERRSISRELHDEVGQSLTGVLLEMANLSKLIRTRDPESVAAKAAEIKREVE 287 Query: 411 DAYRQLRELLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVH 469 ++ +R + R + L L AL+ + ++ +++D + L + + Sbjct: 288 NSIGVVRNMALLLRPSMLDDLGLVPALQWQAREVSKRSGLWVSVDAASVSEDLPEEHKTC 347 Query: 470 LLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMR 529 + +I++EA+ NA++HA A + V+ PD + I D+G G + GL ++ Sbjct: 348 IYRIVQEALHNAVQHAGARHVKVAVEQQPD-ELRLAIEDDGKGFD--AQQGRGMGLLGIQ 404 Query: 530 ERAERLGGTLTFSQPSGGGTLVSISFRSAE 559 ER LGG G GT + ++ Sbjct: 405 ERVGYLGGKFEVGSAPGKGTALKVTLPLVR 434 >UniRef50_B0UCY8 Integral membrane sensor signal transduction histidine kinase n=4 Tax=Methylobacterium RepID=B0UCY8_METS4 Length = 700 Score = 218 bits (555), Expect = 6e-55, Method: Composition-based stats. Identities = 60/314 (19%), Positives = 107/314 (34%), Gaps = 12/314 (3%) Query: 262 IDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETVYGELHW 321 D + RD A E E + P M +L Sbjct: 383 PDRAVLAVVAPEDRDRLVAAVEEALRRGAGLDIEFRVTPAGQQARWRRLMGREERPDLPR 442 Query: 322 QNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLL--MEERATIARELHDSLAQVLSY 379 L ++ + R ++L +E+ IARELHD + Q ++ Sbjct: 443 AGGGRGEGAVLHGVIADIEPRKRAEAAHHDLLRRLAQAQEDEQRRIARELHDQVGQTVTG 502 Query: 380 LRIQLTLLKRSIPEDN--ATAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSAL 436 L + L L+ + A+ + + R + + R L L +AL Sbjct: 503 LSLGLKGLEDLLARGPSPPRARDQVRWLQGLAGEIGRDIHRTASDLRPSALDDLGLVNAL 562 Query: 437 REMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVT 496 + + + + + L +++ + ++ +EA+ N +KHA A+ ++V Sbjct: 563 AALGADWTARYGLGVDVQAFGLSARLPLEVETAMYRVAQEALTNVLKHARATHVSVVLER 622 Query: 497 APDGNHTVYIRDNGIGIGEPK------EPEGHYGLNIMRERAERLGGTLTFSQPSGGGTL 550 + V I D+G G GL+ +RER +GGTL G GT Sbjct: 623 RGE-RLGVVIEDDGTGFDPEACAPPAEGRPRRLGLSSIRERLSLIGGTLRVESAPGSGTT 681 Query: 551 VSISFRSAEGEESQ 564 + I A E++ Sbjct: 682 LFIDVPLAPMPEAR 695 >UniRef50_C2C0V0 Possible histidine kinase n=5 Tax=Listeria RepID=C2C0V0_LISGR Length = 358 Score = 217 bits (554), Expect = 7e-55, Method: Composition-based stats. Identities = 57/223 (25%), Positives = 103/223 (46%), Gaps = 5/223 (2%) Query: 337 SSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDN- 395 + + + ++ +L+EER IARELHDS++Q L + L+ L ++ Sbjct: 124 ARTQEIASGYAETAGQSKEAILVEERHRIARELHDSVSQQLFAAMMLLSALNEQGEKNAT 183 Query: 396 ATAQSIMADFSQALNDAYRQLRELLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLTLD 454 Q + +ND+ ++R LL R T L+ L + ++L L + + + Sbjct: 184 PAMQKQLKLVESIVNDSQSEMRALLLHLRPTQLEGKSLKVGMEQLLQELTAK--IPIEVR 241 Query: 455 CRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIG 514 + +AL ++ HL +I++E + N ++H+ A+ + V D + + D+G+G Sbjct: 242 WEIADIALKKGIEDHLFRIVQELLSNTLRHSKAALLEVRLA-IVDQVAILKVVDDGVGFN 300 Query: 515 EPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRS 557 + +G YGL MRER E GGT+ GT V + Sbjct: 301 VGEVAQGSYGLQNMRERVEEFGGTIKIISFPNQGTSVEVKIPL 343 >UniRef50_B4WQU2 GAF domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WQU2_9SYNE Length = 1769 Score = 217 bits (554), Expect = 8e-55, Method: Composition-based stats. Identities = 59/271 (21%), Positives = 111/271 (40%), Gaps = 11/271 (4%) Query: 296 GQPNPELPMQILPVTMQETVYGELHW----QNSHVSSSEPLLNSVSSMLGRGLYFNQAQK 351 Q + + + G + + + + ++++ L+ + + Sbjct: 1497 HQAQGHTSAVCACMKVGDQPLGFIGFAFTDRTLLTEEQLQFIQALTNQATLSLHLTRLAE 1556 Query: 352 HFQ----QLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQ 407 Q L ER +ARE+HD+LAQ + + +QL K + P++ + + Q Sbjct: 1557 AAQTNALSSALTSERNRLAREIHDTLAQAFTGVSLQLEAAKAAAPDNLEDSTYHIDRAGQ 1616 Query: 408 ALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQM 466 + R + R L+ LP+ALR L + + + + AL + Sbjct: 1617 LARRGLSEARRSVHALRSQALETDTLPNALRTALYEMTQSSPTQPHFRLKGTPFALPENI 1676 Query: 467 QVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPE-GHYGL 525 Q +LL+I +EA+ NA++HA A + + +P + + D+G G E +GL Sbjct: 1677 QTNLLRIGQEAITNALRHAQADNLTLLLEFSP-AQVRLSVTDDGTGCEISSFSELEGFGL 1735 Query: 526 NIMRERAERLGGTLTFSQPSGGGTLVSISFR 556 MRER R G +F+ GT++ I+ Sbjct: 1736 MGMRERVYRFDGHFSFTSHPRRGTVIDITIP 1766 Score = 49.1 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 22/143 (15%), Positives = 49/143 (34%), Gaps = 11/143 (7%) Query: 250 LYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQILPV 309 L+Q L+ + IV +N I+ + +P+ Sbjct: 1252 LWQRPLPLDAAPEFSAKILQKQPIVIENLRETLRPGPHIWEPSIAWHLQRNHTSIICVPL 1311 Query: 310 TMQETVYGELHW----QNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATI 365 + + V G L L ++++ + + + +Q +++E+ Sbjct: 1312 VLGDRVLGFLGLPFVGATHITQDDIELAQALANQATLAIQLTRLAEEAKQTAILQEQERA 1371 Query: 366 AR----EL---HDSLAQVLSYLR 381 AR EL +D+L++ L+ L Sbjct: 1372 ARQHVTELAKTNDALSETLTALT 1394 >UniRef50_C1YH63 Signal transduction histidine kinase, COG4585 n=1 Tax=Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 RepID=C1YH63_NOCDA Length = 442 Score = 217 bits (554), Expect = 8e-55, Method: Composition-based stats. Identities = 52/258 (20%), Positives = 102/258 (39%), Gaps = 8/258 (3%) Query: 309 VTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLY-FNQAQKHFQQLLLMEERATIAR 367 + + + G W + ++++ + + ++ M ER +AR Sbjct: 175 LLINGVMVGYTLWFGGWLGRIIEQSYERANLIRELRESRLEVVRLSEETGAMAERERLAR 234 Query: 368 ELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLT- 426 E+HD+LAQ + + ++ + D A+ +A + + + R ++ + Sbjct: 235 EVHDTLAQGFTSIVALTQAVESEMDSDPELARRHLALMRETAAENLAEARAMVAARQPVG 294 Query: 427 LQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHAN 486 L L +AL + L + + + AL +Q+ LL+ +EA+ N +HA Sbjct: 295 LDSQTLEAALDRIASRLGGELGVPVDTEVLGAPTALSNDLQICLLRTAQEALANVRRHAR 354 Query: 487 ASEIAVSCVTAPD-----GNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTF 541 A + V+ G + + D+G+G + G+ GL MR RA+ GG + Sbjct: 355 AGHVRVALEYTRAPDGSPGPVELTVADDGVGFDPGRTAPGN-GLANMRRRADDAGGAVEV 413 Query: 542 SQPSGGGTLVSISFRSAE 559 G GT V +S Sbjct: 414 GSAPGRGTRVRMSLPLPP 431 >UniRef50_Q24Z69 Putative uncharacterized protein n=1 Tax=Desulfitobacterium hafniense Y51 RepID=Q24Z69_DESHY Length = 269 Score = 217 bits (553), Expect = 8e-55, Method: Composition-based stats. Identities = 57/243 (23%), Positives = 104/243 (42%), Gaps = 14/243 (5%) Query: 317 GELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQV 376 G+L ++S+ E ++ S + Q Q+ E I+RELHDS+ Q Sbjct: 33 GQLPGGERNISAWELVIKSRADQDAALRALIQLQEL--------ENKRISRELHDSVGQA 84 Query: 377 LSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSA 435 L+ L +++ ++ E+ + + + ++R + R L+ L A Sbjct: 85 LTSLLLRIRAIQNK--EEATEVFDQLEELYHLTTETMEEVRRISLNLRPLALENLGLVDA 142 Query: 436 LREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCV 495 + ++ Q T ++ L ++++ + +I++EA+ N KHA A +A++ Sbjct: 143 IYWYVENFQKNTGIEVVFRSSASKRTLPKEIELTIYRIVQEALTNVSKHAQAQHVAITI- 201 Query: 496 TAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISF 555 + IRD+G GI K+ EG GL M ER LGGTL+ GT + + Sbjct: 202 -GGSERVLMSIRDDGKGIDRAKKTEG-LGLLGMSERVRLLGGTLSIQGGEAEGTSILVEI 259 Query: 556 RSA 558 Sbjct: 260 PLT 262 >UniRef50_A5EGA4 Bacteriophytochrome n=13 Tax=Rhizobiales RepID=A5EGA4_BRASB Length = 783 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 59/293 (20%), Positives = 106/293 (36%), Gaps = 26/293 (8%) Query: 288 GENWRISEGQPNPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFN 347 W +E + L + +L V ++ + + E L + ++ L + Sbjct: 494 ASPWLAAEVEAAHRLRVALLEVVLRRIDQLAREREAAR-QRQERLTSELNERLAQSERLA 552 Query: 348 QAQKHFQQLL-----------------LMEERATIARELHDSLAQVLSYLRIQLTLLKRS 390 +A + +L ER IARELHD+L Q L+ L++ L + Sbjct: 553 RALRKETELRAAVEGDLTQVLRRTVADQETERQRIARELHDTLGQSLTMLQLGLQAIGHE 612 Query: 391 IPEDNATAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDTLQNQTSA 449 I Q + R + + T R + L A+ +L+T + Sbjct: 613 IAGGP-KLQQRFDGIKTIADSLGRDVHRIATEIRPSAIDDLGLQKAIESLLETWSENAAL 671 Query: 450 KLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDN 509 L + L ++ L ++++E + N ++HA A ++ V D ++ + D+ Sbjct: 672 NYYLHLSPKDMRLPKAIEATLYRVLQETLTNVVRHAEARKVGVILNVT-DREVSMIVEDD 730 Query: 510 GIGI-----GEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRS 557 G G P GL +RER +GG+L G GT V Sbjct: 731 GRGFPADADDPTASPAMRLGLLGIRERLALVGGSLEIESSPGRGTTVFARVPL 783 >UniRef50_B2TG29 PAS/PAC sensor signal transduction histidine kinase n=2 Tax=Burkholderia RepID=B2TG29_BURPP Length = 370 Score = 217 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 62/286 (21%), Positives = 111/286 (38%), Gaps = 16/286 (5%) Query: 280 AEYLELNVGENWRISEGQPNPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSM 339 A + E WR+ + + + +T G+L Sbjct: 88 AAWQGRVEDEGWRV---RKDESRLWANVVITAVHDEQGDLLGFAKITRDMTE------RR 138 Query: 340 LGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPED-NATA 398 L A Q E+ IARELHD L Q ++ L++ L L + + + Sbjct: 139 RLEDLEHASAASALVQQARENEQRRIARELHDDLGQQITALKMTLALHETELARHFSEAG 198 Query: 399 QSIMADFSQALND---AYRQLRELLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLTLD 454 ++ + + + +R + R L L +AL M + + + + + Sbjct: 199 RARLGSVREMADQLDAMATSMRRIAADLRPPMLDDLGLEAALEWMTEGFEQRYGVPVRCE 258 Query: 455 CRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIG 514 L L+ + L ++I+EA+ N +HA A+E+ V+ A D ++ + I D+G+G+ Sbjct: 259 ISPDVLCLNDLAAISLYRVIQEALTNVARHARANEVFVTLS-ADDRHYHLQIHDDGVGLP 317 Query: 515 -EPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAE 559 P +GL MRER +LGG L+ G G ++ A Sbjct: 318 KAPAPRADCFGLLGMRERISQLGGVLSVDSIPGRGVTITARVPLAR 363 >UniRef50_C5C2U0 Histidine kinase n=2 Tax=Actinomycetales RepID=C5C2U0_BEUC1 Length = 431 Score = 217 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 58/256 (22%), Positives = 104/256 (40%), Gaps = 16/256 (6%) Query: 319 LHWQNSHVSSSEPLLNSV--------SSMLGRGLYFNQAQKHFQQLLLMEERATIARELH 370 L + H + L V +++ Q ++ +++ER +ARE+H Sbjct: 165 LDVSDRHAAEQRQALAEVHEANARLEAALEENAGLHAQLLVQAREAGVLDERQRMAREIH 224 Query: 371 DSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQ 429 D+LAQ L+ + QL + + + + + ++ + R + L Sbjct: 225 DTLAQGLAGILTQLQAAE-QAAHEPEAWGRHVTNATDLARESLAEARRTVHAVEPEALAD 283 Query: 430 ADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASE 489 A LP A+ ++ + L + ++V LL+ +EA+ N KHA AS Sbjct: 284 ARLPEAIGDVARRWSEVNDVRADLTTTGDPRPMHVDVEVTLLRAAQEALANVAKHARASR 343 Query: 490 IAVSCVTAPDGNHTVYIRDNGIGIGEPKEPE-----GHYGLNIMRERAERLGGTLTFSQP 544 + ++ D T+ +RD+G+G G +GL MR+R +RL G L Sbjct: 344 VGLTLSYMED-LVTLDVRDDGVGFEPDATRGQGHADGGFGLAGMRQRVQRLAGRLDVESE 402 Query: 545 SGGGTLVSISFRSAEG 560 GGGT +S S + Sbjct: 403 PGGGTAISASVPAIPA 418 >UniRef50_D0BKY9 Sensor histidine kinase VraS n=1 Tax=Granulicatella elegans ATCC 700633 RepID=D0BKY9_9LACT Length = 351 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 60/250 (24%), Positives = 110/250 (44%), Gaps = 9/250 (3%) Query: 319 LHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQ-----KHFQQLLLMEERATIARELHDSL 373 L + + + L + L ++ + ++ ++ ER IARELHDS+ Sbjct: 105 LMIRLDTFFQETAKIAEMQEQLVQNLQQISSRPEYIGEETKEEIIELERHRIARELHDSV 164 Query: 374 AQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADL 432 +Q L + L+ + + + Q +A + +ND+ ++R LL R +L+ L Sbjct: 165 SQQLFAAMMMLSAMNEQKEQLSPVIQQQLALVEKVINDSQSEMRALLLHLRPISLENKTL 224 Query: 433 PSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAV 492 + +L L T +L+L L + L + + HL +I++E V N ++HA A ++ V Sbjct: 225 VQGIESLLKELT--TKVQLSLHWELDEVTLPSTFEDHLFRIVQELVSNTLRHAKAKQLEV 282 Query: 493 SCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVS 552 D + + D+GIG G YGL + ER +GG + GT++ Sbjct: 283 FLKQKDD-YIILKLVDDGIGFDTSVSKAGSYGLKNIEERVAGMGGQCKIISIANQGTIIE 341 Query: 553 ISFRSAEGEE 562 I + +E Sbjct: 342 IKIPQKQEKE 351 >UniRef50_B1XZ31 Histidine kinase n=5 Tax=cellular organisms RepID=B1XZ31_LEPCP Length = 501 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 63/300 (21%), Positives = 112/300 (37%), Gaps = 11/300 (3%) Query: 268 RHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETVYGELHWQNSHVS 327 + ++ V G + ++ + L Q ++ + W Sbjct: 170 KPSMRQVAPKLGYVVGLPRWGWMMGTGLYLDDIQVTLDQLERQGQANIWATMAWIAGIAL 229 Query: 328 SSEPLLNSVSSMLGRGLYFN-----QAQKHFQQLLLMEERATIARELHDSLAQVLSYLRI 382 LL++ + L Y Q H ERA ++RELHD Q L +++ Sbjct: 230 LGISLLSACALALNLSEYRAADAQLQLMAHQVVQSQENERAHLSRELHDGTGQTLVSIKL 289 Query: 383 QLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLT-LQQADLPSALREMLD 441 + + + + + +++A ++R L R T L LP+ALR + + Sbjct: 290 LMDSAIGHLKRNLQAPPPTLDKARERIDEALSEVRTLSHRLRPTVLDTFGLPAALRYLGE 349 Query: 442 TLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGN 501 + R P L ++ L +I +EA+ N +HA AS + + + P G Sbjct: 350 EFAEHAELAFFMRLRGPEQTLPEDIKTVLFRITQEALTNIERHARASRVDLRLIFGPAG- 408 Query: 502 HTVYIRDNGIGIGEPK---EPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSA 558 + ++D+G+G +P G MRER +GG LT G T V +A Sbjct: 409 VRLTVQDDGVGYDTQALQLDPRRGIGQRNMRERMASIGGQLTVQSQPGS-TRVIAQVPTA 467 >UniRef50_B2JH43 PAS/PAC sensor signal transduction histidine kinase n=1 Tax=Burkholderia phymatum STM815 RepID=B2JH43_BURP8 Length = 493 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 75/401 (18%), Positives = 135/401 (33%), Gaps = 25/401 (6%) Query: 170 RRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSL 229 R + ++ +Q+ E G T+ ++ L+ + L + S+ Sbjct: 99 WHARKDGIRFWASVLVIAQQREQGDLAGFAAVTHDLSQRQLIEAKLRRSEQRLQAMIDSV 158 Query: 230 EA---SVEEKTRDLHEAKRRLE------VLYQCSQALNTSQIDVHCFRHILQIVRDNEAA 280 E + T ++ + + + + + + + + Sbjct: 159 EDYAIFMLSPTGEVTSWNTGAQRIEGYCAGEIIGRHFSVFYPPEARTAGLPERMLETAST 218 Query: 281 EYLELNVGENWRISEGQPNPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSML 340 + + E WR+ I P+ G L L Sbjct: 219 QGR--SEAEGWRVRSDGSRFWADAIITPIRDD---KGALQGFAKVTRDLTEHKRL--EQL 271 Query: 341 GRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDN--ATA 398 A + EE+ IARELHD L Q L+ L++ +L++ + + A Sbjct: 272 EHVGELAAAT----ERAREEEKKRIARELHDDLGQQLTALKMSAVILQQDVEAGHYTAET 327 Query: 399 QSIMADFSQALNDAYRQLRELLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLTLDCRL 457 + +D LR + + R T L L A+ + D + K + Sbjct: 328 AAKARGLVVQADDTMSALRRIASNLRPTMLDDLGLLPAVEWLADEFSRRYGIKASTRLSA 387 Query: 458 PTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIG-EP 516 LA + +I++EA+ N +HA A+E+ V+ D V I DNG G P Sbjct: 388 GELAFSDTASTAIFRIVQEALTNVARHACATEVVVTIE-LDDNACEVRIDDNGRGAASAP 446 Query: 517 KEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRS 557 + +GL +RER +L GT++ G V I F Sbjct: 447 GDKPDSFGLLGIRERVRQLNGTVSLGNRLDRGFRVQIRFPI 487 >UniRef50_UPI0001C312DE integral membrane sensor signal transduction histidine kinase n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C312DE Length = 468 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 58/236 (24%), Positives = 101/236 (42%), Gaps = 5/236 (2%) Query: 322 QNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLR 381 ++ + L +++ Q + + ++EER +ARE+HD+LAQ L+ + Sbjct: 186 ALRELAETNRRLE--ATLAENAALQAQLVEQARDAGVVEERQRMAREIHDTLAQGLTGI- 242 Query: 382 IQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALREML 440 + E + + +Q ++ + R + R L+ A LP A+ E+ Sbjct: 243 VAQIQAAEQAAERPERWRRHLRTAAQLARESLAEARRSVQAVRPEALENARLPEAVAEVA 302 Query: 441 DTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDG 500 + + + L +++V LL+ +EA+ N KHA A + V+ D Sbjct: 303 RRWSSIQGVGVEVTTTGHPRPLPTEVEVTLLRTAQEALANVAKHARAGRVGVTLSYMEDA 362 Query: 501 NHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFR 556 T+ +RD+G+G GL MR+R E LGG L GGGT +S S Sbjct: 363 -VTLDVRDDGVGFAVGAAAGDGVGLVAMRQRVEGLGGRLEIESEPGGGTAISASAP 417 >UniRef50_B8HNY8 Histidine kinase n=1 Tax=Cyanothece sp. PCC 7425 RepID=B8HNY8_CYAP4 Length = 403 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 61/235 (25%), Positives = 101/235 (42%), Gaps = 5/235 (2%) Query: 325 HVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQL 384 + + S + + + +EER IARE+HDSL L+ + L Sbjct: 164 LIQAVLAERKSREQLAIAHEQLRRYALRIEDQATLEERNRIAREIHDSLGHHLTVFNLHL 223 Query: 385 TLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDTL 443 + R +P D A +++ + Q A +++R+ + R LQ L +AL+ ++ + Sbjct: 224 SAALRLLPTDPEEAIALLEEVKQLGATALQEVRQSVGQLRTDPLQGNSLETALQTLISEV 283 Query: 444 QNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHT 503 T L L L +QV L +I++E++ N K+A AS I + D Sbjct: 284 HKSTGILPKLQVNLQ-RTLPRDVQVALYRIVQESLTNICKYAQASAIQICL--TADSELH 340 Query: 504 VYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSA 558 + I DNG G + G +GL ++ER LGGTLT G G + + Sbjct: 341 LTIADNGQGFDLSQNTTG-FGLQGLKERVTALGGTLTIHTAPGQGCEIGVHCPLP 394 >UniRef50_Q1IIL1 GAF sensor signal transduction histidine kinase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IIL1_ACIBL Length = 552 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 77/452 (17%), Positives = 163/452 (36%), Gaps = 41/452 (9%) Query: 148 LLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNE 207 L V I + L + V L +++ A R + + + + Sbjct: 84 KLQVDIRVVSQALDIYLELLDPYVHQMFEVERLGEVIAALDRFSSATYVAVS-NAYFDAQ 142 Query: 208 LGLLAKTFNQMSSELHK-LYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQ----- 261 A + +EL +L V + T + A + +L + ++ Sbjct: 143 KAEAATLLAVLDAELTAPNLSALLNRVLQVTTESFRASLGVILLRDADAPVLRARANVGF 202 Query: 262 ------IDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETV 315 +++ + L + R++ + + +P+ E V Sbjct: 203 GDEIENLEIEFGHGFSGHIAQTGEPGILPDITESHGRLNPFCRDKAQALWGVPLKAGEKV 262 Query: 316 YGELHWQNS----HVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQL-------------LL 358 G + + + + LL +++ + + ++ Sbjct: 263 IGVMLIGFAKPYVWLPTEHELLRAIADRSALAIQRAGMTEALREREARIAELSGYLLRAQ 322 Query: 359 MEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRE 418 EER I+RELHD Q L +R+ L +L+ ++ TA++ + + + ++ +R Sbjct: 323 EEERKRISRELHDETGQALMVIRLYLGMLEATVTTR--TAKTKIHETLEVVDRTIEGIRR 380 Query: 419 LLTTFRL-TLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREA 477 ++ LQ+ L +A+R+ L K + L + + ++++EA Sbjct: 381 IIGRLSPLVLQELGLIAAIRKEAKDLAKSAGVKAKVSVGDNVGRLSPVTETAVYRVVQEA 440 Query: 478 VLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEP---EGHYGLNIMRERAER 534 + N KHA+A+ + + G + I D+G+GI + ++P +GL MRER Sbjct: 441 LHNVAKHAHATTVTIQL-RRDGGLVKLCIEDDGVGIKQSQKPNPGRRSFGLAGMRERITT 499 Query: 535 LGGTLTFSQP----SGGGTLVSISFRSAEGEE 562 L GTL G GT + ++ +A + Sbjct: 500 LEGTLKVGPASRNDEGAGTRIEVTVPAASAGD 531 >UniRef50_B9TG52 Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9TG52_RICCO Length = 335 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 56/258 (21%), Positives = 100/258 (38%), Gaps = 5/258 (1%) Query: 301 ELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLME 360 ++ + T+Q+ G + W ++ S+ + + QA + + Sbjct: 75 DMKWVNIRATVQDLGQGAVQWDGIMLNISQSKHEK--QEIEQARRDLQALTAHIHQVKEQ 132 Query: 361 ERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELL 420 ER +IARE+HD L L+ +++ L+ + + I + +N + + + Sbjct: 133 ERVSIAREIHDDLGGNLTAMKLGLSTIIQQIEDSQQVNMEQATMLQAIINQTFDAVHRIS 192 Query: 421 TTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLN 480 R + L AL + + Q L D + L +I +EA+ N Sbjct: 193 GNLRPNILDLGLVDALEWQVSQFKKQLGITARFVTNCHDLECDPDQSMALFRICQEALSN 252 Query: 481 AMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKE-PEGHYGLNIMRERAERLGGTL 539 K+A A ++V D + I DNG+GI + +GL M+ERA LGG Sbjct: 253 IAKYAQADLVSVELS-LVDQALFMTISDNGVGIAPADKIKPNSFGLRGMQERAAALGGEC 311 Query: 540 TFS-QPSGGGTLVSISFR 556 SG GT + + Sbjct: 312 HIEASSSGPGTCIHVRAP 329 >UniRef50_Q0RWJ5 Sensor kinase, two-component system n=7 Tax=Rhodococcus RepID=Q0RWJ5_RHOSR Length = 1607 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 58/341 (17%), Positives = 122/341 (35%), Gaps = 31/341 (9%) Query: 246 RLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQ 305 R L + S + + +A +E++ G PN Sbjct: 1271 RHRSLLDAVGRIVASDDVEEVLAKLREATMATTSARRVEISRLPESVGPGGVPNGSPGAS 1330 Query: 306 I-LPVTMQETVYG---------------------ELHWQNSHVSSSEPLLNSVSSMLGRG 343 + P+ E G + EP + ++++ G Sbjct: 1331 LGEPIVTGEAARGMKMTERIAKPVVADGHNASSVVAAFPLGEGHYHEPTVEVLAALAGAV 1390 Query: 344 LYFNQAQKHFQQLLL---MEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQS 400 + + ++ + ++ ER IAR+LHD + + + L+ L++ + + Sbjct: 1391 IEREKLRRRSMEWIVDVQEAERGRIARDLHDEFGHLFAGITEGLSALEKV---GDEATRR 1447 Query: 401 IMADFSQALNDAYRQLRELLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLTLDCRLPT 459 + D + + + R + R + L LP + ++++ + ++ L Sbjct: 1448 VTMDVRKIVRQGIQAARVGAWSLRPSGLDDLGLPGCVEQLVEDCRQMFPLRIELTATGHA 1507 Query: 460 LALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEP 519 + ++ + +I++EA+ N +H+ A+ +V V + + D+GIG Sbjct: 1508 GPIPPSVETAVFRIVQEALTNIDRHSRAAAASVVLVCSGH-TVRAVVEDDGIGFDVDVSG 1566 Query: 520 E-GHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAE 559 + G GL MRERA + G LT G GT+V + Sbjct: 1567 QSGSLGLIGMRERARLVRGRLTVDSQPGQGTIVMVEVPIRR 1607 >UniRef50_D1AAA6 Histidine kinase n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1AAA6_THECD Length = 664 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 63/325 (19%), Positives = 115/325 (35%), Gaps = 28/325 (8%) Query: 252 QCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVG--ENWRISEGQPNPELPMQILPV 309 + ++ L T+ VR+ A + + V E + + +P+ Sbjct: 338 RLNRRLQTASDPAAALAVAASAVREALRATGVVVEVTGREGRAALAQDGDLGPDPESIPL 397 Query: 310 TMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATI---- 365 G L + + ++ L + Q+ R I Sbjct: 398 VWHGRPVGRLLL-SRTEPPDRRIAAVMARNLAELANAVRLTADVQRS-----RERILATR 451 Query: 366 -------ARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRE 418 R+LHD L L+ L + + + ++ D A ++ +N +RE Sbjct: 452 EEERRRLRRDLHDGLGPTLASLAMTVDAARLTLRRDPAAVDPLLERLRTTMNQTIADIRE 511 Query: 419 LLTTFRLT-LQQADLPSALREMLDTLQNQTS----AKLTLDCRLPTLALDAQMQVHLLQI 473 L+ R L L A++ + D ++ ++ L A ++V +I Sbjct: 512 LVYGLRPPALDDLGLAGAVQALADGAAESPGGGDPLRVRVELSGDLEDLPAAVEVAAYRI 571 Query: 474 IREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAE 533 ++EA+ N +HA A+ V + G V + D+G+G P G++ MRERA Sbjct: 572 VQEALTNVRRHARATTAVVRLERS--GELRVSVADDGVG--PPAAARAGVGMSSMRERAA 627 Query: 534 RLGGTLTFSQPSGGGTLVSISFRSA 558 LGG+ + GGTLV Sbjct: 628 ELGGSCSIGPGPAGGTLVQARLPIH 652 >UniRef50_B2A8K7 Histidine kinase n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A8K7_NATTJ Length = 396 Score = 215 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 69/369 (18%), Positives = 152/369 (41%), Gaps = 31/369 (8%) Query: 207 ELGLLAKT-FNQMSSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVH 265 E+ A+T ++QM EL ++ + ++E + + L S+ +T Sbjct: 38 EIAESARTEYDQMQQELKEIKNKVREVIQEVDNLEKKCHQAKVHLADVSKHFDT--YSEE 95 Query: 266 CFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETV-----YGEL- 319 + + D A L + ++ + + E ++ L T+++ G + Sbjct: 96 DIKEAYEQASDLRA--RLTIMKEREQQLRNHRDSTERRLKNLKKTIEKAENIVNQMGVIE 153 Query: 320 HWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSY 379 ++ + + + L + GL +AQ+ ++ + E +HD AQ L+ Sbjct: 154 NYLSQGLGGLQETLEDLEKRKAIGLKIIRAQEEERRRVARE--------IHDGPAQNLAN 205 Query: 380 LRIQLTLLKRSIPEDN--ATAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSAL 436 + ++ ++ I ++ + + + Q + + +R+++ R TL L A+ Sbjct: 206 MVLRTEYCEKLIDANSGTDEIKEELGELKQQVRTNLKDVRKIIFDLRPMTLDDLGLVPAI 265 Query: 437 REMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVT 496 R+++ ++ +++ + L L+ +++ L + ++EA+ N KH+ A V Sbjct: 266 RKLIQGVEEESNIEGELKTFGEEKRLNRYIEIALFRTVQEALNNIKKHSGAKRFWVKTDF 325 Query: 497 APDGNHTVYIRDNGIGIGE--------PKEPEGHYGLNIMRERAERLGGTLTFSQPSGGG 548 + D + IRD+G G H+G++ M+ER E LGG + FS G Sbjct: 326 SND-TIHIIIRDDGKGFNPEDKLQDSEDDSDSEHFGISNMKERVESLGGEINFSSKPKQG 384 Query: 549 TLVSISFRS 557 T +SI Sbjct: 385 TKISIKVPV 393 >UniRef50_Q67JE7 Two-component sensor histidine kinase n=1 Tax=Symbiobacterium thermophilum RepID=Q67JE7_SYMTH Length = 477 Score = 215 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 70/379 (18%), Positives = 129/379 (34%), Gaps = 21/379 (5%) Query: 187 SQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKLYRSLEASVEEKTRDLHEAKRR 246 + P + ++ L + + L V + H Sbjct: 111 AGGFPRDLLTQRPAAPDRTEDVQWLLSEEGVIHDATALIVDGLAGHVRVGLSEAH----- 165 Query: 247 LEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQI 306 L + + Q+ +L ++ + + V + R ++ +L +++ Sbjct: 166 ---LMAMLRDMRRRQMLTLALACVLAVLLGYLGIWKVTVRVPQLVRAAQAVGRGDLTVRV 222 Query: 307 LPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIA 366 P E +G L + L +++ R +A EERA I+ Sbjct: 223 RPGPADE--FGHL---AEAFNQMVRDLARTRALVVRKEAARKALLQKVLTAQEEERARIS 277 Query: 367 RELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLT 426 RELHD + Q L+ L + L R + E +A QS + +R L R Sbjct: 278 RELHDEVGQALTGLIVGL----RVLEEGDAERQSQVTYLRDLAAGTLESVRRLSRDLRPA 333 Query: 427 -LQQADLPSALREMLDTLQNQTSAKLTLDCRLPT-LALDAQMQVHLLQIIREAVLNAMKH 484 L L +A+R + T+ + L ++ L +I +EA+ N +H Sbjct: 334 VLDDIGLVAAIRRYAGDFARYHGIEGTVQVVGDESVRLPPVVETTLYRITQEALTNVARH 393 Query: 485 ANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQP 544 + A + + + I D+G G EG GL + ER + G +T Sbjct: 394 SQARHFGIVLD-LRGPDVRLVIEDDGRGFDPGAPREGT-GLTGISERLALVSGRMTIESS 451 Query: 545 SGGGTLVSISFRSAEGEES 563 GT + I+ + +ES Sbjct: 452 PESGTTLFIAVPREKEDES 470 >UniRef50_B5JLS1 Histidine kinase domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JLS1_9BACT Length = 687 Score = 215 bits (548), Expect = 3e-54, Method: Composition-based stats. Identities = 65/272 (23%), Positives = 117/272 (43%), Gaps = 2/272 (0%) Query: 287 VGENWRISEGQPNPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYF 346 + ++ + P L +Q P++ ++ S +S Sbjct: 415 LPTSFELLLRSPQDLLVLQRPPISTTVWIFATATAATSLSLLIAAAFWWISHKKLAEQQR 474 Query: 347 NQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFS 406 + + + +++ER +ARE+HD+LAQ + + IQL K +P A +S + S Sbjct: 475 RRIIREAEFAAMIKERMRLAREIHDNLAQGFTAVSIQLETAKHKLPAAAAPVRSHLDQAS 534 Query: 407 QALNDAYRQLRELLTTFR-LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQ 465 + ++ R + R +L AD +AL + + T + + L A+ Sbjct: 535 ALVRESLADARRSIQGLRHESLSNADFLAALERIAGRVLKDTPIAFQQELKGDVARLGAE 594 Query: 466 MQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGL 525 + L+ I EA+ N +KHA A I +SC + + T+ I D+GIG + + P +GL Sbjct: 595 AENELIAIATEAITNTVKHAQAKRIQISCQIH-EAHGTLSISDDGIGFRKDQPPPSGFGL 653 Query: 526 NIMRERAERLGGTLTFSQPSGGGTLVSISFRS 557 M+ERA ++ TLT GT ++I Sbjct: 654 QGMQERAAKIHATLTLDSSPKQGTRITIHIPI 685 >UniRef50_B1Z4G8 Multi-sensor signal transduction histidine kinase n=1 Tax=Burkholderia ambifaria MC40-6 RepID=B1Z4G8_BURA4 Length = 665 Score = 215 bits (548), Expect = 3e-54, Method: Composition-based stats. Identities = 55/306 (17%), Positives = 110/306 (35%), Gaps = 10/306 (3%) Query: 260 SQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETVYGEL 319 S+ FR + + R+ G + + ++ + G Sbjct: 354 SRFIPERFRAAHARHVEQFGVTGVSERQMGRQRVLFGL-RGDGTEFPIEASISQIRDGTS 412 Query: 320 HWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSY 379 + + + + L + + Q + EE+ IARELHD L Q L+ Sbjct: 413 KLYTVMLRDVTERVRA-ETALKQSREELRDLSANLQNVREEEKTRIARELHDDLGQQLTA 471 Query: 380 LRIQLTLLKRSIPEDNAT---AQSIMADFSQALNDAYRQLRELLTTFRLT-LQQADLPSA 435 L++ L+ ++ + A + + ++ +R + R L L A Sbjct: 472 LKMDLSAVELGLAGVVAPNTGVREQLGGMHGLIDSTVASVRRIAADLRPVMLDDLGLVPA 531 Query: 436 LREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCV 495 + + + + + D A L +I++EA+ N +H++A+ + ++ Sbjct: 532 IEWLANDFTRRYRITVDRDIAPVDTAFTGVGATTLFRIVQEALTNVARHSDATNVQLALK 591 Query: 496 TAPDGNHTVYIRDNGIGIGEPKE---PEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVS 552 +G + I DNG G E +GL +RERA GT+T G G ++ Sbjct: 592 -LEEGYCVLRIADNGHGAPENARNEQDRPSFGLIGIRERAHMFEGTVTVDNRPGAGFTIT 650 Query: 553 ISFRSA 558 ++ Sbjct: 651 VALPLH 656 >UniRef50_B2GCM4 Two-component sensor histidine kinase n=8 Tax=Lactobacillus RepID=B2GCM4_LACF3 Length = 355 Score = 215 bits (548), Expect = 3e-54, Method: Composition-based stats. Identities = 68/335 (20%), Positives = 126/335 (37%), Gaps = 22/335 (6%) Query: 236 KTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISE 295 + L A + + L ++ ++ A + + + + I Sbjct: 23 QADQLVVANQAGQDLIDA---------FDLDLDYLQELAHTAIAQQQSKADGCYDCEIMN 73 Query: 296 GQPNPELPMQILPVTMQETVYGELHWQNSHVSSSEPL-------LNSVSSMLGRGLYFNQ 348 P +P+ + P Y ++ S L L+ + + + Sbjct: 74 QLPELTVPVDLPPDHTNPLRYTMVYRVLSPTDQVYALELKSRATLDRATLDRATQVAQQR 133 Query: 349 AQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQA 408 + +ER I+++LHDS+AQ + + + LK ++ Q + Sbjct: 134 MLNQYVNRAYEDERKRISQDLHDSIAQGVYSAIMGVRRLKSEQLDEPER-QQVSTMIETQ 192 Query: 409 LNDAYRQLRELLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQ 467 L+D R+++E+ R + L L +A+R + L + + + + T L +Q Sbjct: 193 LDDTLREVKEMALDIRPSVLDSFGLVAAIRALAKRLTENSGVIIDVIGKADTSGLTTDVQ 252 Query: 468 VHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEP---EGHYG 524 L +I +EA+ NA+KHAN +EI V V ++ + DNG G G Sbjct: 253 SVLYRITQEAINNALKHANPTEITVMLVAHAH-YISLEVIDNGCGFDFQAHRGFNGHSLG 311 Query: 525 LNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAE 559 L M ER + L G+ G GT V++ F E Sbjct: 312 LMNMSERVKALNGSFMIDSAPGQGTTVTVKFPVIE 346 >UniRef50_C0GH42 Multi-sensor signal transduction histidine kinase n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GH42_9FIRM Length = 651 Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats. Identities = 61/245 (24%), Positives = 101/245 (41%), Gaps = 11/245 (4%) Query: 320 HWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSY 379 N + + + ++ Q EER I+RELHDS AQ L Sbjct: 399 LLDNGDIPGFQHIAKDITEERKLH-ENQQFYIEHITRAQEEERLRISRELHDSTAQSLIV 457 Query: 380 LRIQLTLLKRSIPEDNATA--QSIMADFSQALNDAYRQLRELLTTFRLT-LQQADLPSAL 436 + QL K + D+ + + ++ + +++R+ R + L L +L Sbjct: 458 VLHQLE--KYLVSSDHLRLGDSRFLFNVAEQVKAILQEVRQFSRDLRPSILDDLGLVPSL 515 Query: 437 REMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVT 496 +D L K+ L+ L +++V L +II+EA+ N M+HA A+ V Sbjct: 516 EWYIDELNRTHGLKVDLNIIGQKQMLRPEIRVSLFRIIQEALRNVMRHAEANNAKVKIEF 575 Query: 497 APDGNHTVYIRDNGIGIGEPKEPE----GHYGLNIMRERAERLGGTLTFSQPSGGGTLVS 552 + V ++DNG G + G GL M ERA+ LGG++ S G GT + Sbjct: 576 -DNNEVRVVVQDNGKGFDAEPLGDLLRNGKLGLAGMHERAKILGGSIEISSAKGAGTTIF 634 Query: 553 ISFRS 557 I+ Sbjct: 635 IAVPL 639 >UniRef50_Q814L6 Two-component sensor protein yhcY n=40 Tax=Bacillus RepID=Q814L6_BACCR Length = 523 Score = 215 bits (547), Expect = 4e-54, Method: Composition-based stats. Identities = 62/314 (19%), Positives = 127/314 (40%), Gaps = 15/314 (4%) Query: 252 QCSQALNTSQIDVHCFRHILQIVRDNEA-AEYLELNVGENWRISEGQPNPELPMQIL--- 307 Q + + + ++ + ++++ A L E I + + + Sbjct: 217 QVALFIREEKELSLRASYVQEELQEDVKEAAKKALEQDEPVLIKHQIGHNVHLNRAVIAT 276 Query: 308 PVTMQETVYGELHWQ---NSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERAT 364 P+ +Q ++G L +++ ++ ++S+ + + + + ++L+ MEER Sbjct: 277 PIHIQNHIFGVLCVSLNNGEFDANTIDVIQALSNHVSLIIENLRLNEQRRELVRMEERNR 336 Query: 365 IARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFR 424 +AR+LHDS++Q L L + + N + + + A +++R L+ R Sbjct: 337 LARDLHDSVSQKLFSLTFMTKGAEAVLKGKNEKVDQSLHEMRELAQGALKEMRTLIWQLR 396 Query: 425 LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKH 484 + L AL++ + L K+ L ++ L +I +EA+ N KH Sbjct: 397 PAGLEKGLLPALKQYGENL----GLKIREQVTG-VRDLPRVVEEALWRIGQEALNNVSKH 451 Query: 485 ANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPE-GHYGLNIMRERAERLGGTLTFSQ 543 A E + + N ++ I D G G E E G+ MRER E +GGT+ Sbjct: 452 AGVKEATIYFTVN-EKNVSLEIVDQGKGFVEKNIKEKKSLGMTTMRERVELVGGTIKIVS 510 Query: 544 PSGGGTLVSISFRS 557 + T V ++ Sbjct: 511 SNKR-TSVKVNVPL 523 >UniRef50_D2WA17 NirW n=1 Tax=Methylomonas sp. 16a RepID=D2WA17_9GAMM Length = 525 Score = 215 bits (547), Expect = 4e-54, Method: Composition-based stats. Identities = 53/246 (21%), Positives = 94/246 (38%), Gaps = 5/246 (2%) Query: 319 LHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLS 378 L ++ + + L +A + + EER IARE+HD L QVL+ Sbjct: 281 LTIVGVALAINVEERIRREADLRVSQRTLKALMQRNEQVREEERHHIAREIHDELGQVLT 340 Query: 379 YLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALRE 438 +++ LL R+ P + + + Q ++ + +R + R + L AL+ Sbjct: 341 AIKMHAALLTRTTPHAGS-WRDDINHLLQLIDGGIKVVRNIALHLRPPILALGLVPALQW 399 Query: 439 MLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAP 498 + D L T + L ++ +EA+ N +HA A ++ + P Sbjct: 400 LTDQFAETHGIVCELATEGDTSGIQEPYLTTLFRLAQEALTNIARHAEAGKVWIKLTAEP 459 Query: 499 DGNHTVYIRDNGIGIGEPKE--PEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFR 556 + ++ + DNG G +E GLN M R E L G + GT++ Sbjct: 460 E-RISLVVADNGHGFDVDEELKTGNSLGLNGMLHRVEMLDGEFEIHSNA-EGTILLCHLP 517 Query: 557 SAEGEE 562 E Sbjct: 518 FHRNGE 523 >UniRef50_D2T798 Sensor for nitrate reductase system, protein histidine kinase (Acts on NarP and NarL) n=2 Tax=Erwinia pyrifoliae RepID=D2T798_ERWPY Length = 326 Score = 215 bits (547), Expect = 5e-54, Method: Composition-based stats. Identities = 133/322 (41%), Positives = 192/322 (59%), Gaps = 4/322 (1%) Query: 235 EKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRIS 294 K ++ +A RRL +L CS+ L+ S F+ L +V +E +LEL+ E +S Sbjct: 1 MKHANVRQANRRLRLLIACSELLSHSTQGQRAFQQTLALVVSHEKLAWLELSAPEFGVLS 60 Query: 295 EGQPNPELPMQILPVTMQETVYG-ELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHF 353 G+ + L + G +L WQ + P++ S+++ML L + Q+ Sbjct: 61 AGKKAGQTRWHSLSLRHPSRPPGGKLRWQGARP--LRPIIKSLAAMLANALERWRNQQQI 118 Query: 354 QQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAY 413 LL+ +ERATIA ELHDSLAQ L++ RIQL L+R+I D+ TA I+A Q+L A Sbjct: 119 HGLLIQQERATIAAELHDSLAQELTFQRIQLVRLRRAIEPDDTTALDIVAGMEQSLTGAS 178 Query: 414 RQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQI 473 RQLRELL FRLT+ A L AL + + L Q+SA +TL C+ L AQ Q+H++ I Sbjct: 179 RQLRELLNNFRLTVAPASLAHALEQAVAPLHQQSSAHITLACQFSGQ-LAAQQQIHVVHI 237 Query: 474 IREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAE 533 +REA++NA++HA+A+EI+V P G + I+DNG+GI +EP+GH+GLNIM ERA Sbjct: 238 VREALVNAVRHASATEISVGSRPLPQGGIAITIKDNGVGIASLEEPDGHHGLNIMNERAA 297 Query: 534 RLGGTLTFSQPSGGGTLVSISF 555 RL GTL + + GGT VS+ F Sbjct: 298 RLNGTLLIERHAKGGTSVSLHF 319 >UniRef50_B4D2I1 Histidine kinase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D2I1_9BACT Length = 670 Score = 214 bits (546), Expect = 7e-54, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 104/227 (45%), Gaps = 5/227 (2%) Query: 341 GRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQS 400 + ++ + EER IARELHDSLAQ L+ + IQL + + + Q Sbjct: 432 RVREQMETIRSQLERAAVSEERTRIARELHDSLAQHLASITIQLDAVAVRLKTEEGDTQQ 491 Query: 401 IMADFSQALNDAYRQLRELLTTFR-LTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPT 459 ++ + + Q R + R TL + L +A+ E++ L + L + Sbjct: 492 LLETAREMAAHSMDQTRLAIWDLRSPTLARDGLVAAIHEVVQPLTERRGTLLRVTLEGEV 551 Query: 460 LALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGI---GEP 516 L + HLL+I++EA NA++H + ++I ++ + G V I DNG G Sbjct: 552 RRLGGGAENHLLRIVQEASANALQHGSPTQIEIAVLFRAQG-LMVTIHDNGAGFRVPSPG 610 Query: 517 KEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEES 563 P H+GL M ERA+++GG L G GT +S+ + E+ Sbjct: 611 ALPVAHFGLRGMFERAKKIGGQLVLESEPGAGTTISVWIPWRQTVEA 657 >UniRef50_Q4ZMH3 PAS n=6 Tax=Pseudomonas RepID=Q4ZMH3_PSEU2 Length = 670 Score = 214 bits (546), Expect = 7e-54, Method: Composition-based stats. Identities = 65/362 (17%), Positives = 135/362 (37%), Gaps = 14/362 (3%) Query: 216 NQMSSELHKLYRSLEASVEE----KTRDLHEAKRRLEVLYQC--SQALNTSQIDVHCFRH 269 + EL L VEE + + + +L+ S+ ++ + Sbjct: 308 QALEQELLAAREELARRVEEEEALRLAQFSIDQSTVGILWVNWDSRVRYANRAAESMLGY 367 Query: 270 ILQIVRDNEAAEYLELNVGENWR-----ISEGQPNPELPMQILPVTMQETVYGELHWQNS 324 V + ++ + W + +P++ + ++ Sbjct: 368 APGQVVERPLIDFEPGLHMDRWLNLWKSARSSEDSPQVFETHCLRADGSLLPVDVSLSFL 427 Query: 325 HVSSSEPLLNSVSSM--LGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRI 382 +E L+ ++ + R + + + EE+A IARE+HD L Q+L+ L++ Sbjct: 428 RFRDAEYLVVFLTDVSERRRAHDLLRELSAHLESVREEEKAHIAREVHDELGQMLTVLKL 487 Query: 383 QLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDT 442 + ++ + + + + + + + ++ +R++ T R + A + SA+ Sbjct: 488 ETSMCELAYADLDPGLSERLDSMKRLIAQLFQLVRDVATALRPPILDAGIASAIEWQARR 547 Query: 443 LQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNH 502 + +T + AL + +I++EA+ N M+HA A + +S T DG Sbjct: 548 FEARTQIPCLVQVPDNLPALSDARATGMFRILQEALTNVMRHARAHTVEISL-TLQDGMM 606 Query: 503 TVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEE 562 + I D+G G +GL MRER LGG L G GT + + Sbjct: 607 CMSIADDGQGFVIESGRAVSFGLVGMRERVLMLGGRLELDSEVGEGTTLRAYIPLDTLAQ 666 Query: 563 SQ 564 + Sbjct: 667 ER 668 >UniRef50_A9WKI6 ATP-binding region ATPase domain protein n=3 Tax=Chloroflexaceae RepID=A9WKI6_CHLAA Length = 791 Score = 214 bits (545), Expect = 7e-54, Method: Composition-based stats. Identities = 58/249 (23%), Positives = 90/249 (36%), Gaps = 9/249 (3%) Query: 319 LHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLS 378 + + + + + + L ++ EER +AR+LHD++ Q L Sbjct: 139 MLMRRLILPRLQQEIEERAQQLSERQSL--LLAQLREAAAQEERNRLARDLHDTIKQQLF 196 Query: 379 YLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALR 437 + I + D A + A +++ LLT R L L A+R Sbjct: 197 SINIAAATAQSLYERDPVGAAQHIQHVRDLSQAAMAEMKALLTQLRPQPLATIGLIEAIR 256 Query: 438 EMLDTLQNQTSAKLTLDCRL--PTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCV 495 E L+ L + L L Q + ++I+EA+ N +HA A + VS Sbjct: 257 EQLEALHFRAEVSTALHHDGFPDEALLLPGTQETVFRVIQEALSNVARHARARHVQVSFG 316 Query: 496 TA---PDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVS 552 TV + D+G G G G+ MR R E LGG L GT + Sbjct: 317 QEMVAGRSWLTVTVADDGRGFDPATSTLG-MGMTNMRARIEALGGELAVRSAPHAGTTIQ 375 Query: 553 ISFRSAEGE 561 AE E Sbjct: 376 FRIPLAEQE 384 >UniRef50_Q0S8Z4 Sensor kinase, two-component system n=2 Tax=Rhodococcus RepID=Q0S8Z4_RHOSR Length = 647 Score = 214 bits (545), Expect = 8e-54, Method: Composition-based stats. Identities = 71/322 (22%), Positives = 122/322 (37%), Gaps = 18/322 (5%) Query: 248 EVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNPELPMQIL 307 + + +++ + V E + + G + + Sbjct: 331 RAVRTLGRQFGSAETPEQLLEGLAAGVGVALRLESVSVRRTSGVAAVWGSATGH--AESV 388 Query: 308 PVTMQETVYGELHWQNS----HVSSSEPLLNSVSSMLGRGL------YFNQAQKHFQQLL 357 + + V G + + + L +S+++ GL Q + + Sbjct: 389 ELVHRGAVLGTMVVTAPPGESLGARTRRSLTELSAVVTAGLVVLQSAENLQEARRRLASV 448 Query: 358 LMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSIMADFSQALNDAYRQLR 417 +EER TI RELHD L L+ +R+ L + + D A ++ + L+ +R Sbjct: 449 RLEERQTIRRELHDGLGPSLAGIRLGLQGARNLLGSDPVAAAELIDALQEQLDHQVEGVR 508 Query: 418 ELLTT-FRLTLQQADLPSALREMLDTLQNQTSAKLTLDCRLPTLALDAQMQVHLLQIIRE 476 +L + F L + L AL E+ Q+++ +L + P L A++ + I+ E Sbjct: 509 QLSRSMFPPVLDELGLVPALHELAAN-QSRSGFQLRVQAD-PPPRLGAEISAAVYGIVVE 566 Query: 477 AVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLG 536 AV NA +H+ A V A + TV I D+G G G G MRERA LG Sbjct: 567 AVTNARRHSGADGCRVDATFARE-MLTVVIHDDGCGFDPA--RGGGVGTRSMRERAHELG 623 Query: 537 GTLTFSQPSGGGTLVSISFRSA 558 GTL GT+V+ Sbjct: 624 GTLHIESGRPTGTVVTARLPLT 645 >UniRef50_B2J2K6 Integral membrane sensor signal transduction histidine kinase n=2 Tax=Cyanobacteria RepID=B2J2K6_NOSP7 Length = 419 Score = 214 bits (545), Expect = 8e-54, Method: Composition-based stats. Identities = 62/236 (26%), Positives = 100/236 (42%), Gaps = 4/236 (1%) Query: 325 HVSSSEPLLNSVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQL 384 S E L + + Q + ++ER IARE+HD L L IQ+ Sbjct: 183 ERQSREQLEIAHLQLEITNQQLCQYALRIEDQATLQERNRIAREIHDGLGHTLVAQTIQI 242 Query: 385 TLLKRSIPEDNATAQSIMADFSQALNDAYRQLRELLTTFRL-TLQQADLPSALREMLDTL 443 +N A + + + +A ++R L+ R LQ L SA+ ++L Sbjct: 243 NNTLLFWESNNDKALTFLKQAKELGAEALLEIRRSLSLLRSNPLQGQSLQSAIEKLLTDF 302 Query: 444 QNQTSAKLTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHT 503 T + + +P L ++ L +I++E++ N KHA A+ + V + A G Sbjct: 303 HQTTGIEPSCKIDVPH-TLPTEINTALYRIVQESLTNICKHAQATSVTVRLL-ARTGMIH 360 Query: 504 VYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAE 559 + I DNG G + G +GL MRERA LG L G G +S+S ++ Sbjct: 361 LSIEDNGKGFNPTQNTTG-FGLQGMRERAVALGAQLNLQSQLGTGCCISVSLPLSK 415 >UniRef50_Q2RJV0 Histidine kinase n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RJV0_MOOTA Length = 384 Score = 213 bits (544), Expect = 9e-54, Method: Composition-based stats. Identities = 77/401 (19%), Positives = 142/401 (35%), Gaps = 30/401 (7%) Query: 166 FFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQMSSELHKL 225 T + V + L + + I + + + L EL + + F++ ++ + +L Sbjct: 5 VITAATLEQIVKETVKTLEESREAIYNIAETARQEEARLRQELDEVRREFSEAAARVDRL 64 Query: 226 YRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLEL 285 +EEK L + S+ ++ + + R+ + L Sbjct: 65 ------EIEEKKAR--------NRLMEVSRDFSS--YGEKEMQAAYERAREYQVQLGLWR 108 Query: 286 NVGENWRISEGQPNPELPMQILPVTMQETVYGE----LHWQNSHVSSSEPLLNSVSSMLG 341 R+ + L Q V E + L ++ L + Sbjct: 109 ERESQLRLRRDRLESTLKNQQEMVRRAEELVRNVGAALALLTGELARVGDHLEELEQRHL 168 Query: 342 RGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQSI 401 GL QAQ+ ++ L E +HD AQ ++ + + L R + ++ Sbjct: 169 VGLKILQAQEEERRRLARE--------IHDGPAQAMAGIAFKAELCTRLADIKSGNLKNE 220 Query: 402 MADFSQALNDAYRQLRELLTTFRLT-LQQADLPSALREMLDTLQNQTSAKLTLDCRLPTL 460 + D ++R+++ + R L L AL + + L Sbjct: 221 LLALGNLARDTLAEIRKIIFSLRPMMLDDLGLVPALYRFAGEYLEKYGLDVELIIIGNEE 280 Query: 461 ALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPKEPE 520 LD +++ + ++I+EA+ N KHA +E V P+ T+ I+D G G Sbjct: 281 RLDKALEIGIFRLIQEALNNVWKHAGVTEARVKVEFRPE-KITLSIKDEGCGFDPAAARG 339 Query: 521 GHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGE 561 YGL M+ER + LGG L G GT V I +G Sbjct: 340 SGYGLAGMQERVKLLGGKLAIKTAPGRGTEVEIVIPRQQGG 380 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.313 0.150 0.429 Lambda K H 0.267 0.0458 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,140,121,098 Number of Sequences: 3077464 Number of extensions: 142336357 Number of successful extensions: 860840 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 8992 Number of HSP's successfully gapped in prelim test: 33121 Number of HSP's that attempted gapping in prelim test: 761943 Number of HSP's gapped (non-prelim): 78031 length of query: 566 length of database: 1,040,396,356 effective HSP length: 134 effective length of query: 432 effective length of database: 628,016,180 effective search space: 271302989760 effective search space used: 271302989760 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 96 (41.4 bits)