42 d1w5sa2 Probab=99.57   E-value=3.5e-14  Score=105.12  Aligned_columns=243  Identities=16%

Q ss_pred             HCCCHHHHHHHHHHH-----------CCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf             279789999999884-----------669837999189988989999999842421001123200001026887654345
Q batch____       193 VIGQEQGKRGLEITA-----------AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQW  261 (506)
Q Consensus       193 v~Gq~~akral~iAa-----------ag~h~iLL~G~PGtGKT~lAr~l~~ilp~l~~~e~~e~~~i~s~~g~~~~~~~~  261 (506)
                      ++|++..++++.-+.           ...+++|+.||||||||+++++++..++.........+..++..+.........
T Consensus        18 ~~gR~~ei~~l~~~l~~~~~~~~~~~~~~~~ill~G~pGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (287)
T d1w5sa2          18 LRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTI   97 (287)
T ss_dssp             CSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHH
T ss_conf             76838999999999999985687644573389997699983899999999997420123447814998404563003455


Q ss_pred             -----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEEECCCCCC------CHHHHHHHHHHHHCCCEEECCCCE
Q ss_conf             -----445100477653411234552122787301035877876361023------999999999998539657046881
Q batch____       262 -----RQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEF------ERRTLDALREPIESGQIHLSRTRA  330 (506)
Q Consensus       262 -----~~~pfr~ph~~~s~~~l~gg~~~~~pG~i~lAh~GVLfLDEi~~~------~~~vl~~Ll~~LEeg~v~i~r~g~  330 (506)
                           ....+..++.+.+...+........+   ......++++||+..+      ....+..|.+.++.......+   
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~iDe~d~l~~~~~~~~~~~~~l~~~~~~~~~~~~~---  171 (287)
T d1w5sa2          98 LSLIVRQTGYPIQVRGAPALDILKALVDNLY---VENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGV---  171 (287)
T ss_dssp             HHHHHHHHTCCCCCTTCCHHHHHHHHHHHHH---HHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSC---
T ss_pred             HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH---HCCCCCCEEEEEEHHHCCCCCCHHHHHHHHHHHHHCCCCCCCC---
T ss_conf             6665431013455567768998899999865---1168861556420110455531479999999998405753366---


Q ss_pred             EEEECCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCHHHHHHHH
Q ss_conf             58946980999725764335415777668989977876117633234323499976898378888630388978998877
Q batch____       331 KITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVPGESSATVKQRV  410 (506)
Q Consensus       331 ~~~~Pa~f~lIaA~NP~~~g~~~~~~~~~~~~~~~~~~~~ls~pLlDR~Dl~v~v~~~~~~~~~~~~~~~e~s~~~~~~v  410 (506)
                           .++.++.++|+...               .........+...|+...+.+.+...++..                
T Consensus       172 -----~~~~~i~~~~~~~~---------------~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~----------------  215 (287)
T d1w5sa2         172 -----NRIGFLLVASDVRA---------------LSYMREKIPQVESQIGFKLHLPAYKSRELY----------------  215 (287)
T ss_dssp             -----CBEEEEEEEEETHH---------------HHHHHHHCHHHHTTCSCEEECCCCCHHHHH----------------
T ss_pred             -----CCEEEEECCCCHHH---------------HHHHHHHCCCHHHCCCEEEEEECCCHHHHH----------------
T ss_conf             -----88899961688889---------------888532000012117448998129989999----------------


Q ss_pred             HHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf             43999999620012324789999998520899999999999862---989899999999999999870899688999999
Q batch____       411 MAARERQFKRQNKLNAWLDSPEIRQFCKLESEDAMWLEGTLIHL---GLSIRAWQRLLKVARTIADIDQSDIITRQHLQE  487 (506)
Q Consensus       411 ~~ar~~~~~r~~~~n~~l~~~~l~~~v~l~~~a~~~l~~~~~~~---~lS~R~~~~ilrvArtiAdL~g~~~V~~~dv~e  487 (506)
                          ++...+.........         +++++.+++.....+.   .-++|....+++.|..+|..+|++.|+.+||.+
T Consensus       216 ----~il~~~~~~~~~~~~---------~~~~~~~~i~~~~~~~~~~~g~~R~a~~ll~~A~~~A~~~g~~~I~~~~v~~  282 (287)
T d1w5sa2         216 ----TILEQRAELGLRDTV---------WEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRK  282 (287)
T ss_dssp             ----HHHHHHHHHHBCTTS---------CCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHH
T ss_pred             ----HHHHHHHHHCCCCCC---------CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf             ----999987651047777---------8989999999998531589999899999999999999964898268999999


Q ss_pred             HHH
Q ss_conf             998
Q batch____       488 AVS  490 (506)
Q Consensus       488 Al~  490 (506)
                      |++
T Consensus       283 A~~  285 (287)
T d1w5sa2         283 AVS  285 (287)
T ss_dssp             HHH
T ss_pred             HHH
T ss_conf             873