BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (644 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0ACY5 Uncharacterized protein yeaG n=433 Tax=Proteobac... 1340 0.0 UniRef50_Q3J884 PrkA serine kinase n=28 Tax=Bacteria RepID=Q3J88... 320 9e-86 UniRef50_UPI00016C05A7 Serine protein kinase (prkA protein), P-l... 306 1e-81 UniRef50_P39134 Protein prkA n=98 Tax=Bacteria RepID=PRKA_BACSU 281 4e-74 UniRef50_A8TM27 Putative Ser protein kinase n=1 Tax=alpha proteo... 236 2e-60 UniRef50_D2R2R0 Putative serine protein kinase, PrkA n=3 Tax=Bac... 208 5e-52 UniRef50_A9WHT0 PrkA AAA domain protein n=23 Tax=Bacteria RepID=... 195 6e-48 UniRef50_A4BNQ6 PrkA protein n=2 Tax=cellular organisms RepID=A4... 194 8e-48 UniRef50_Q18FZ9 Predicted serine protein kinase n=11 Tax=Halobac... 182 5e-44 UniRef50_A0MN77 Serine kinase n=1 Tax=Thermus phage phiYS40 RepI... 176 2e-42 UniRef50_D0LUZ5 Putative serine protein kinase, PrkA n=1 Tax=Hal... 73 3e-11 UniRef50_Q08Z64 Serine protein kinase, putative n=5 Tax=Cystobac... 70 3e-10 UniRef50_A9GWJ6 Protein kinase n=1 Tax=Sorangium cellulosum 'So ... 56 4e-06 UniRef50_A6G891 Putative serine protein kinase, PrkA n=1 Tax=Ple... 52 7e-05 UniRef50_D2EEA6 Putative serine protein kinase, PrkA n=1 Tax=Can... 42 0.052 >UniRef50_P0ACY5 Uncharacterized protein yeaG n=433 Tax=Proteobacteria RepID=YEAG_ECO57 Length = 644 Score = 1340 bits (3468), Expect = 0.0, Method: Compositional matrix adjust. Identities = 644/644 (100%), Positives = 644/644 (100%) Query: 1 MNIFDHYRQRYEAAKDEEFTLQEFLTTCRQDRSAYANAAERLLMAIGEPVMVDTAQEPRL 60 MNIFDHYRQRYEAAKDEEFTLQEFLTTCRQDRSAYANAAERLLMAIGEPVMVDTAQEPRL Sbjct: 1 MNIFDHYRQRYEAAKDEEFTLQEFLTTCRQDRSAYANAAERLLMAIGEPVMVDTAQEPRL 60 Query: 61 SRLFSNRVIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLA 120 SRLFSNRVIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLA Sbjct: 61 SRLFSNRVIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLA 120 Query: 121 ERLKSLMQLVPIYVLSANGERSPVNDHPFCLFNPQEDAQILEKEYGIPRRYLGTIMSPWA 180 ERLKSLMQLVPIYVLSANGERSPVNDHPFCLFNPQEDAQILEKEYGIPRRYLGTIMSPWA Sbjct: 121 ERLKSLMQLVPIYVLSANGERSPVNDHPFCLFNPQEDAQILEKEYGIPRRYLGTIMSPWA 180 Query: 181 AKRLHEFGGDITKFRVVKVWPSILQQIAIAKTEPGDENNQDISALVGKVDIRKLEHYAQN 240 AKRLHEFGGDITKFRVVKVWPSILQQIAIAKTEPGDENNQDISALVGKVDIRKLEHYAQN Sbjct: 181 AKRLHEFGGDITKFRVVKVWPSILQQIAIAKTEPGDENNQDISALVGKVDIRKLEHYAQN 240 Query: 241 DPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIIL 300 DPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIIL Sbjct: 241 DPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIIL 300 Query: 301 AHSNESEWVTFRNNKNNEAFLDRVYIVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGT 360 AHSNESEWVTFRNNKNNEAFLDRVYIVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGT Sbjct: 301 AHSNESEWVTFRNNKNNEAFLDRVYIVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGT 360 Query: 361 LETLSRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLS 420 LETLSRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLS Sbjct: 361 LETLSRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLS 420 Query: 421 TRFAFKILSRVFNFDHVEVAANPVHLFYVLEQQIEREQFPQEQAERYLEFLKGYLIPKYA 480 TRFAFKILSRVFNFDHVEVAANPVHLFYVLEQQIEREQFPQEQAERYLEFLKGYLIPKYA Sbjct: 421 TRFAFKILSRVFNFDHVEVAANPVHLFYVLEQQIEREQFPQEQAERYLEFLKGYLIPKYA 480 Query: 481 EFIGKEIQTAYLESYSEYGQNIFDRYVTYADFWIQDQEYRDPDTGQLFDRESLNAELEKI 540 EFIGKEIQTAYLESYSEYGQNIFDRYVTYADFWIQDQEYRDPDTGQLFDRESLNAELEKI Sbjct: 481 EFIGKEIQTAYLESYSEYGQNIFDRYVTYADFWIQDQEYRDPDTGQLFDRESLNAELEKI 540 Query: 541 EKPAGISNPKDFRNEIVNFVLRARANNSGRNPNWTSYEKLRTVIEKKMFSNTEELLPVIS 600 EKPAGISNPKDFRNEIVNFVLRARANNSGRNPNWTSYEKLRTVIEKKMFSNTEELLPVIS Sbjct: 541 EKPAGISNPKDFRNEIVNFVLRARANNSGRNPNWTSYEKLRTVIEKKMFSNTEELLPVIS 600 Query: 601 FNAKTSTDEQKKHDDFVDRMMEKGYTRKQVRLLCEWYLRVRKSS 644 FNAKTSTDEQKKHDDFVDRMMEKGYTRKQVRLLCEWYLRVRKSS Sbjct: 601 FNAKTSTDEQKKHDDFVDRMMEKGYTRKQVRLLCEWYLRVRKSS 644 >UniRef50_Q3J884 PrkA serine kinase n=28 Tax=Bacteria RepID=Q3J884_NITOC Length = 643 Score = 320 bits (821), Expect = 9e-86, Method: Compositional matrix adjust. Identities = 206/593 (34%), Positives = 316/593 (53%), Gaps = 26/593 (4%) Query: 52 VDTAQEPRLSRLFSNRVIARYPAF-EEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLG 110 ++ A +P + RL+ + I Y F +EF+G+E + Q+V Y A+ EE +Q+LYL+G Sbjct: 61 INAADDPHVKRLYGDEPIKVYSFFKDEFFGIERTLAQLVRYFHSASLHGEESRQVLYLMG 120 Query: 111 PVGGGKSSLAERL-KSLMQLVPIYVLSANGERSPVNDHPFCLFNPQEDAQILEKEYGIPR 169 PVG GKSSL ERL + L + PIY + E P+ + P L P+ + EK + Sbjct: 121 PVGAGKSSLIERLHRGLENVEPIYAI----EGCPMREEPLHLL-PRHLRKEFEKMLDV-- 173 Query: 170 RYLGTIMSPWAAKRL-HEFGGDITKFRVVKVWPSILQQIAIAKTEPGDENNQDISALVGK 228 ++ + P RL EF G V+ V S + I P D NNQD S L+G Sbjct: 174 -HIEGDLCPVCRFRLKEEFDGRYEDVPVITVDFSKRDRRGIGVVPPVDPNNQDTSVLIGS 232 Query: 229 VDIRKLEHYAQNDPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTE 288 DI KL+ Y++ DP +GA N+G++EF+E+FK + LH ++TATQE Sbjct: 233 EDISKLDLYSEGDPRVLDLNGAFNVGNRGVVEFIEVFKNETEYLHSMITATQEKFVPAPG 292 Query: 289 GISALPFNGIILAHSNESEWVTFRNNKNNEAFLDRVYIVKVPYCLRISEEIKIYEKLLNH 348 + + I+AHSNE+EW F+ + NEA LDR+ +VKVPY LR+SEEIKIY KLL+H Sbjct: 293 RHGTVYVDTCIVAHSNEAEWQKFKADHTNEAILDRIVVVKVPYNLRLSEEIKIYGKLLHH 352 Query: 349 SELTHAPCAPGTLETLSRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRD 408 S+ A AP TLE S F+ILSRL+ + +K+R+Y+GE + + K + Sbjct: 353 SDF-RAHIAPHTLEVASMFAILSRLEPTPKCDLITKLRLYNGEEVVEKGSTLKINAKELQ 411 Query: 409 YAGVDEGMNGLSTRFAFKILSRVFNFDHVEVAANPVHLFYVLEQQIEREQFPQEQAERYL 468 A EGM G+STRF K L E NP+++ L +++ + + + YL Sbjct: 412 EAASREGMFGISTRFIMKALDNALA--DSEEGINPINVREALIVMVKQSELADDTRKHYL 469 Query: 469 EFLKGYLIPKYAEFIGKEIQTAYLESYSEYGQNIFDRYVTYADFWIQDQEYRDPDTGQLF 528 E L+ L Y E + KEI A++ SY E + +F Y+ +A+ ++ +D DT Sbjct: 470 ELLQDTLHKVYLEILEKEITKAFVYSYEEQAETLFQNYLDHAEAYVNKTRVKDWDT---- 525 Query: 529 DRESLNAE---LEKIEKPAGI--SNPKDFRNEIVNFVLRARANNSGRNPNWTSYEKLRTV 583 RE L + L+ +E+ I S FR E++ F+ A G ++ SYE L+ Sbjct: 526 -REELQPDENFLKSVEEQIAIVGSAADGFRQEVIAFLW--AATRRGEKVSYQSYEPLKEA 582 Query: 584 IEKKMFSNTEELLPVISFNAKTSTDEQKKHDDFVDRMMEKGYTRKQVRLLCEW 636 IEKK+ S+ +L +I+ + ++ KK+DD V ++E+GY ++ ++ Sbjct: 583 IEKKLTSSVRDLSRIITKSRTRDEEQAKKYDDLVKNLLERGYNEHSAEVVLKY 635 >UniRef50_UPI00016C05A7 Serine protein kinase (prkA protein), P-loop containing n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C05A7 Length = 589 Score = 306 bits (785), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 197/608 (32%), Positives = 317/608 (52%), Gaps = 53/608 (8%) Query: 26 TTCRQDRSAYANAAERLLMAIGEPVMVDTAQEPRLSRLFSNRVIARYPAFEEFYGMEDAI 85 T + D+S E L + +P + A + RL++ ++ + F+GME+ + Sbjct: 10 TRIQTDKSLNITFLEYLYILDKDPTIYKLAHQ----RLYAQLILNTFE--NNFFGMENTL 63 Query: 86 EQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMQLVP-IYVLSANGERSPV 144 I +Y AA G EE +QILYL+GPVG GKSSL + +K L++ P IY L P+ Sbjct: 64 TSIKNYFFAAANGGEEARQILYLVGPVGAGKSSLIDSIKQLLENSPAIYHLDG----CPM 119 Query: 145 NDHPFCLFNPQEDAQILEKEYGIPRRYLGTIMSPWAAKRLHEFGGDITKFRVVKVWPSIL 204 ++ P L P++ + E G+ + G + + +HEF G F + S+ Sbjct: 120 HEEPLHLI-PKQIRKHFEDALGL--KIQGDLCPKCKYRLIHEFNGKYENFPITSSKFSVS 176 Query: 205 QQIAIAKTEPGDENNQDISALVGKVDIRKLEHYAQNDPDAYGYSGALCRANQGIMEFVEM 264 +++ I P D NNQD S L+G VDI K++ Y ++DP + +GA AN+GI+EF+E+ Sbjct: 177 KRLGIGVVPPVDSNNQDTSILIGSVDISKMDLYPEDDPRVFSLNGAFHAANRGIIEFIEV 236 Query: 265 FKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEWVTFRNNKNNEAFLDRV 324 FK ++ L+ +LTATQE L F+GIILAHSNE+EW F+ + NEA LDR+ Sbjct: 237 FKNDVEYLYTMLTATQEKLIPSPSRGEMLYFDGIILAHSNEAEWNKFKADPTNEAILDRI 296 Query: 325 YIVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSRFSILSRLKEPENSSIYSK 384 ++VPYCL + +EIKIY+K L + AP TL ++F+IL+RL +N +++K Sbjct: 297 VKIEVPYCLILDDEIKIYKKFLEQTNFG-VHIAPHTLRVAAQFAILTRLLPSDNVDLFTK 355 Query: 385 MRVYDGESLKDTDPKAKSYQEYRDYAGVD------EGMNGLSTRFAFKILSRVFNFDHVE 438 +++Y+ E GVD EGM G+S RF K + F Sbjct: 356 LKIYNSEE-----------------TGVDISKVAHEGMKGISVRFIMKTFGKAFA--SCG 396 Query: 439 VAANPVHLFYVLEQQIEREQFPQEQAERYLEFLKGYLIPKYAEFIGKEIQTAYLESYSEY 498 P H VLE +I+ P+ ++Y+EFL+ Y+ Y + + +++ T ++ SY+E Sbjct: 397 KCLTPPHFMAVLENEIKDMILPENVKKQYIEFLEVYVKKDYQKSLEEDVXTNFIYSYTEQ 456 Query: 499 GQNIFDRYVTYADFWIQDQEYRDPDTGQLFDRESLNAELEKIEKPAGISNPKDFRNEIVN 558 Q IFDRYV D + E + E E+E ++ S K FR ++ Sbjct: 457 AQAIFDRYV---DXAVASDEIDET-------AEEFMTEIE-MQLNISASAAKGFRQDVAA 505 Query: 559 FVLRARANNSGRNPNWTSYEKLRTVIEKKMFSNTEELLPVISFNAKTSTDEQKKHDDFVD 618 +V R +A N G +T Y L+ IE K+ ++ ++L V++ + +++K+DD + Sbjct: 506 YV-RTQA-NLGNLIEYTCYPPLKKAIETKLVTSLKQLTRVVTAENSNAGSDRQKYDDMIA 563 Query: 619 RMMEKGYT 626 +++E GY Sbjct: 564 KLIEAGYC 571 >UniRef50_P39134 Protein prkA n=98 Tax=Bacteria RepID=PRKA_BACSU Length = 631 Score = 281 bits (720), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 200/591 (33%), Positives = 328/591 (55%), Gaps = 52/591 (8%) Query: 71 RYPAFE-EFYGMEDAIEQIVS-YLKHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMQ 128 +Y F+ E +G+E+++E++V Y AA+ L+ +K+IL L+GPV GGKS+L LK ++ Sbjct: 61 KYSFFDRELFGLEESLERLVEEYFHPAAKRLDVRKRILLLMGPVSGGKSTLVTMLKKGLE 120 Query: 129 LVPIYVLSANG-----ERSPVNDHPFCLFNPQEDAQILEKEYGIPRRYLGTIMSPWAAKR 183 Y L+ NG + P+++ P L P +EYGI R G+ +SP R Sbjct: 121 ---AYTLTDNGAVYAIKGCPMHEDPLHLI-PHHLRDDFYREYGI--RIEGS-LSPLNVMR 173 Query: 184 LHE-FGGDITKFRVVKVWPSILQQIAIAKTEPGDENNQDISALVGKVDIRKLEHY-AQND 241 L E +GG I +V +++ S ++ I P D +QDI+ L G +D + Y +++D Sbjct: 174 LEEEYGGRIEDVKVERIFFSEDKRTGIGTFSPSDPKSQDIADLTGSIDFSTIAEYGSESD 233 Query: 242 PDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILA 301 P AY + G L +AN+G+MEF EM K K L LL+ TQEGN+ + + + +I+A Sbjct: 234 PRAYRFDGELNKANRGMMEFQEMLKCDEKFLWHLLSLTQEGNFKAGR-FALISADELIVA 292 Query: 302 HSNESEWVTFRNNKNNEAFLDRVYIVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTL 361 H+NE+E+ +F +NK NEA R+ ++ VPY L++SEE +IYEK++ S++ AP TL Sbjct: 293 HTNETEYRSFISNKKNEALHSRIIVMPVPYNLKVSEEERIYEKMIAESDVADVHIAPHTL 352 Query: 362 ETLSRFSILSRLKEPENSSI--YSKMRVYDGESLK-----DTDPKAKSYQEYRDYAGVDE 414 + + FSIL+RLKEP+ S I KMR+YDGES++ D + K Y DE Sbjct: 353 KVAAMFSILTRLKEPKRSDIDLVKKMRLYDGESVEGYNSVDVEDMKKEYN--------DE 404 Query: 415 GMNGLSTRFAFKILSRVFNFDHVEVAANPVHLFYVLEQQIERE-QFPQEQAERYLEFLKG 473 GM+G+ R+ +S ++E + N + + L++ +++ E ERYL F+ Sbjct: 405 GMSGIDPRYVINRISSTIIRKNME-SINSLDVLRSLKEGLDQHPSISSEDRERYLNFISA 463 Query: 474 YLIPKYAEFIGKEIQTAYLESYSEYGQNIFDRYVTYADFWIQDQEYRDPDTGQLFDRESL 533 +Y + KE+Q A++ SY E + + D Y+ + + + RDP TG E + Sbjct: 464 AR-KEYDDIAKKEVQKAFVYSYEESAKTLMDNYLDNVEAYCNKNKLRDPLTG-----EEM 517 Query: 534 NAE---LEKIEKPAGISN--PKDFRNEIVNFVLRARA-NNSGRNPNWTSYEKLRTVIEKK 587 N + + IE+ GIS K FR EI ++R A G+ ++ S+E+LR I+KK Sbjct: 518 NPDEKLMRSIEEQIGISENAKKAFREEI---LIRISAYARKGKRFDYNSHERLREAIQKK 574 Query: 588 MFSNTEELLPVISFNAKTSTDEQ-KKHDDFVDRMM-EKGYTRKQVRLLCEW 636 +F++ ++++ I+ + KT ++Q KK ++ V R++ E GY L ++ Sbjct: 575 LFADLKDVVK-ITTSTKTPDEQQLKKVNEVVARLIDEHGYNSTSANELLKY 624 >UniRef50_A8TM27 Putative Ser protein kinase n=1 Tax=alpha proteobacterium BAL199 RepID=A8TM27_9PROT Length = 318 Score = 236 bits (601), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 110/198 (55%), Positives = 146/198 (73%) Query: 2 NIFDHYRQRYEAAKDEEFTLQEFLTTCRQDRSAYANAAERLLMAIGEPVMVDTAQEPRLS 61 ++F Y + Y+ K+ E +L E+L C D A+A+AAER++ AIG+P +VDT+++ RL Sbjct: 6 DVFSEYTETYQTRKESEMSLMEYLELCGSDPMAFASAAERMVAAIGDPEVVDTSRDARLG 65 Query: 62 RLFSNRVIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAE 121 R+F NR I YPAF +F+GMED +E++V Y ++AAQGLEE+KQ+LYLLGPVGGGKSSLAE Sbjct: 66 RIFMNRTIKIYPAFHDFFGMEDTVERLVGYFRYAAQGLEERKQVLYLLGPVGGGKSSLAE 125 Query: 122 RLKSLMQLVPIYVLSANGERSPVNDHPFCLFNPQEDAQILEKEYGIPRRYLGTIMSPWAA 181 RLK+LM+ PIYVL A + SPV + P LF+PQ Q L+ +GIP R L ++SPWA Sbjct: 126 RLKTLMEQHPIYVLKAGDQISPVFESPLGLFDPQRMGQKLQDRFGIPLRKLNGLISPWAV 185 Query: 182 KRLHEFGGDITKFRVVKV 199 KRL EF GD+TKF V KV Sbjct: 186 KRLDEFDGDLTKFTVAKV 203 >UniRef50_D2R2R0 Putative serine protein kinase, PrkA n=3 Tax=Bacteria RepID=D2R2R0_9PLAN Length = 683 Score = 208 bits (530), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 177/642 (27%), Positives = 315/642 (49%), Gaps = 55/642 (8%) Query: 20 TLQEFLTTCRQDRSAYANAAER---LLMAIGEPVMVDTAQEPRLS-RLFSNRVIARYPAF 75 T +E+L R NA +R ++ + G V ++ E R+S R F + Sbjct: 28 TFEEYLDLVRTSPLVARNAFQRVYDMIQSYGSDVYEESRGERRVSYRFFQD---PDNGGR 84 Query: 76 EEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMQLV----- 130 + +G+++++E V+ +K AA+G +K++L L GPVG KS++A LK ++ Sbjct: 85 DAVFGLDESLEAFVNAIKSAAKGYGIEKRVLLLHGPVGSSKSTIARLLKRGLERYTTTDE 144 Query: 131 -PIYVLSANGERSPVNDH-------PFCL----FNPQEDAQILE--KEYGIPRRYLGTIM 176 +Y L E SP + H P L F A + E + G + +G + Sbjct: 145 GALYTLGWIDEESPEDVHWCPMHEEPLHLIPERFRDDVTASLNEGRDDDGYKVKIVGD-L 203 Query: 177 SPWA----AKRLHEFGGDITK----FRVVKVWPSILQQIAIAKTEPGDENNQDISALVGK 228 P+ +RL ++GGD T+ RV ++ + +I I +P DE NQD + L G Sbjct: 204 CPFCRFMYTERLKKYGGDWTRVIQDIRVKRIVLNEQDRIGIGTFQPKDEKNQDSTELTGD 263 Query: 229 VDIRKLEHYAQN-DPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGT 287 ++ RK+ Y + DP A+ + G AN+GI+EF+E+ K + L+ LL A+QE Sbjct: 264 INYRKIAQYGSDSDPRAFNFDGEFNVANRGIIEFIEVLKLDVAFLYDLLGASQEHKVK-P 322 Query: 288 EGISALPFNGIILAHSNESEWVTFRNNKNNEAFLDRVYIVKVPYCLRISEEIKIYEKLLN 347 + + + +I+ H+NE E+ +NN+ EA DR + VPY R+S+EI+IYEK N Sbjct: 323 KKFAQTDIDEVIIGHTNEPEYRRLQNNEFMEALRDRTVKIDVPYVTRLSDEIRIYEKDYN 382 Query: 348 HSELTHAPCAPGTLETLSRFSILSRLKEPENSS--IYSKMRVYDGESLKD-TDPKAKSYQ 404 ++ AP T+E + +++L+RL++P N+S + K+++Y+G++L T+ K + Sbjct: 383 REKVKGKHIAPHTIEMAAMWAVLTRLEQPNNASLTLLQKLKLYNGKTLPGFTEENIKELR 442 Query: 405 EYRDYAGVDEGMNGLSTRFAFKILSRVFNFDHVEVAANPVHLFYVLEQQIEREQF--PQE 462 E + EG++G+S R+ +S + NP + LE ++ +E Sbjct: 443 E----EAITEGLHGISPRYVQDKISNALVVHLDSQSINPFMVLNELEAGLKHHSLITSEE 498 Query: 463 QAERYLEFLKGYLIPKYAEFIGKEIQTAYLESYSEYGQNIFDRYVTYADFWIQDQEYRDP 522 RY E L G + +Y + E+Q A + + + + + Y+ + Q ++ R+ Sbjct: 499 TRSRYREML-GVVKEEYENIVKNEVQRA-IAADEDALKRLCGNYIDNVKAYTQREKVRNK 556 Query: 523 DTGQLF--DRESLNAELEKIEKPAGISNPKDFRNEIVNFVLRARANNSGRNPNWTSYEKL 580 TGQ D + + EKI+ P S DFR EI+N++ A G+ ++ S E+L Sbjct: 557 FTGQYDEPDERLMRSIEEKIDIPE--SRKDDFRREIMNYI--AAQLMDGKMFDYRSNERL 612 Query: 581 RTVIEKKMFSNTEELLPVISFNAK-TSTDEQKKHDDFVDRMM 621 ++ K+F + ++ + + S ++ D Q K D R++ Sbjct: 613 YKALQLKLFEDQKDTIKLTSLVSQVVDKDTQAKIDVVKGRLI 654 >UniRef50_A9WHT0 PrkA AAA domain protein n=23 Tax=Bacteria RepID=A9WHT0_CHLAA Length = 692 Score = 195 bits (495), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 172/651 (26%), Positives = 307/651 (47%), Gaps = 64/651 (9%) Query: 20 TLQEFLTTCRQDRSAYANAAER---LLMAIGEPVMVDTAQEPRLSRLFSNRVIARYPAFE 76 T E+L ++ NA +R ++M+ G +D + + FS+ + + Sbjct: 29 TFSEYLDIVVRNPRVARNAFQRVYDMIMSYGTEEFIDAKKRLIRYKFFSD---ESFDGDD 85 Query: 77 EFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAERLK------SLMQLV 130 +G+E + ++V++ K AA+G +K++L L GPVG KS++ RLK S + Sbjct: 86 AIFGLEIPLMRLVNFFKGAARGYGTEKRVLLLHGPVGSSKSTIVRRLKRGLEHYSRTEEG 145 Query: 131 PIY-------------------VLSANGERSPVNDHPFCLFNPQEDAQILEK--EYGIPR 169 +Y V A E+ P+++ P L + +E+ E P Sbjct: 146 ALYTYDWYPGVIENHDTFDWRQVPEAEWEKCPMHEEPLHLIPRELRTTFIERLNETLEPD 205 Query: 170 RYLGTIMSPWAAKRLH------EFGGDITKF----RVVKVWPSILQQIAIAKTEPGDENN 219 + R H + GD K RV ++ S +I I +P DE N Sbjct: 206 HQIRIEGDLCPVCRFHFRELMQRYDGDWLKVMNHVRVRRLVFSEQDRIGIGTFQPKDEKN 265 Query: 220 QDISALVGKVDIRKLEHYAQN-DPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTA 278 QD + L G ++ RK+ Y + DP A+ + G AN+GI+EFVEM K + L+ LL A Sbjct: 266 QDSTELTGDINYRKIAIYGSDSDPRAFNFDGEFNIANRGIIEFVEMLKLDVAFLYDLLGA 325 Query: 279 TQEGNYNGTEGISALPFNGIILAHSNESEWVTFRNNKNNEAFLDRVYIVKVPYCLRISEE 338 +QE ++ + + +I+ H+NE E+ NN+ EA DR + +PY R+ +E Sbjct: 326 SQEHRIK-SKKFAQTDIDEVIIGHTNEPEYRRLENNEFMEALKDRTVRIDIPYVTRLRDE 384 Query: 339 IKIYEKLLNHSELTHAPCAPGTLETLSRFSILSRLKEPE--NSSIYSKMRVYDGESLKD- 395 ++IYE+ N ++ AP TLE + +++L+RL+EP+ N ++ K+++Y+G++L Sbjct: 385 VRIYERDFNKKKV-RVHIAPHTLEMAAMWAVLTRLEEPKKPNLTLLQKLKLYNGKTLPGF 443 Query: 396 TDPKAKSYQEYRDYAGVDEGMNGLSTRFAFKILSRVFNFDHVEVAANPVHLFYVLEQQIE 455 T+ K ++ V EGM G+S R+ +S + E NP + LE ++ Sbjct: 444 TEDNIKELRK----EAVREGMEGISPRYIQDKISNALVSNQEEGYINPFMVLNELESGLK 499 Query: 456 REQF--PQEQAERYLEFLKGYLIPKYAEFIGKEIQTAYLESYSEYGQNIFDRYVTYADFW 513 +EQ +RY + L + +Y E + E+Q A + + E + + Y+ + Sbjct: 500 NHALITDEEQRKRYRDLL-AIVREEYTEIVKNEVQRA-ISADEEAIKRLCANYIDNIKAY 557 Query: 514 IQDQEYRDPDTGQLF--DRESLNAELEKIEKPAGISNPKDFRNEIVNFVLRARANNSGRN 571 Q ++ R+ TGQ D + + EKI+ P S DFR EI+N++ G+ Sbjct: 558 TQREKVRNRYTGQYEEPDERLMRSIEEKIDIPE--SRKDDFRREIMNYI--GALAIEGKT 613 Query: 572 PNWTSYEKLRTVIEKKMFSNTEELLPVISFNAKT-STDEQKKHDDFVDRMM 621 ++ + E+L +E K+F + ++ + + S ++ D Q+K D R++ Sbjct: 614 FDYRTNERLHKALELKLFEDQKDSIKLTSLVSRVIDRDTQEKIDVVKARLI 664 >UniRef50_A4BNQ6 PrkA protein n=2 Tax=cellular organisms RepID=A4BNQ6_9GAMM Length = 652 Score = 194 bits (494), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 165/573 (28%), Positives = 282/573 (49%), Gaps = 38/573 (6%) Query: 77 EFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMQLV------ 130 E +GME+A+ +I Y K A G E +++L LLGP GGKSSL LK ++ Sbjct: 87 ELFGMENALRRITDYFKAANAGSEVGRRLLLLLGPPSGGKSSLVILLKRGLEEYSHTDEG 146 Query: 131 PIYVLSANGERSPVNDHPFCLFNPQEDAQILEKEYGIPRRYLGTIMSPWAAKRL-HEFGG 189 +Y L SP++++P L P + Y + + +SP+ L HEF G Sbjct: 147 ALYALKG----SPLHENPLNLV-PYTLRSEFRETYAVD---IHGELSPFCRAILEHEFDG 198 Query: 190 DITKFRVVKVWPSILQQIAIAKTEPGDENNQDISALVGKVDIRKLEHYA-QNDPDAYGYS 248 + + V +++ S ++ + P D DI+ L+G VD+ K+ Y + DP A+ +S Sbjct: 199 NFMDYPVERIFLSESNRVGVGTYAPHDPTTADIADLIGSVDLSKVSEYGDEGDPRAWSWS 258 Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPF---NGIILAHSNE 305 GA+ A++G++E +E+ K + L+ LLT TQE N +S P + ILAH+N Sbjct: 259 GAVYAASRGLLEMIEILKVKREFLYLLLTLTQEKNVK----VSRFPLIHVDETILAHTNL 314 Query: 306 SEWVTFRNNKNNEAFLDRVYIVKVPYCLRISEEIKIYEKLLNHS-ELTHAPCAPGTLETL 364 +E+ F K NEA LDR+ IV+VPY L +E +IY KL+ + P LE Sbjct: 315 AEFRKFLQEKENEALLDRMVIVQVPYTLHYRDEARIYRKLIAQAPTFREIHLDPHALEVA 374 Query: 365 SRFSILSRLK--EPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLSTR 422 + F++LSRLK E E+ K+R+Y GE D + + + + + DEG+ G+S R Sbjct: 375 AVFAVLSRLKPSEREDLDFSKKVRLYAGE---DVEGYSSTEVDRIRHEFEDEGLAGVSPR 431 Query: 423 FAFKILSRVFNFDHVEVAANPVHLFYVLEQQIERE-QFPQEQAERYLEFLKGYLIPKYAE 481 F LS + V + + L L+ IE + + +Q +++FL Y Sbjct: 432 FVVNALSNAISRSEVR-SLTSMELLVTLKDSIEHDARIDPKQKRSWVDFLVTARKDFYNH 490 Query: 482 FIGKEIQTAYLESYSEYGQNIFDRYVTYADFWIQDQEYRDPDTGQLFDRESLNAELEKIE 541 ++ +++ A S+ E +N+ ++Y+ + + ++E DP T + R+ L +E Sbjct: 491 WVKEDVHKALFVSFEEESENLLEKYLDEVEATLDNREVVDPITAE--SRQPDERFLRAVE 548 Query: 542 KPAGISNP--KDFRNEIVNFVLRARANNSGRNPNWTSYEKLRTVIEKKMFSNTEELLPVI 599 + IS+ FR E+V + A G S+ +L+ +EK +F ++L ++ Sbjct: 549 EKINISDAGKHTFRQEVVRKAM--VAYKRGEKFTLDSHARLKEAMEKYLFEERRDVLRLV 606 Query: 600 SFNAKTSTDEQKKHDDFVDRMM-EKGYTRKQVR 631 + A+ + ++K +R++ + GY R R Sbjct: 607 TSVARPDEEAREKIAAVEERLINDYGYDRHSAR 639 >UniRef50_Q18FZ9 Predicted serine protein kinase n=11 Tax=Halobacteriaceae RepID=Q18FZ9_HALWD Length = 689 Score = 182 bits (461), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 167/607 (27%), Positives = 289/607 (47%), Gaps = 62/607 (10%) Query: 78 FYGME--DAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKS---------------SLA 120 FYG E ++I + V+ +K A+ L +K+I LLGPVG GKS S A Sbjct: 85 FYGREVHESIHEFVNKVKSGARRLGPEKRIKLLLGPVGSGKSHFDWMVRRYFEAYTASDA 144 Query: 121 ERL-----KSLMQLVPIYVLSANGERSPVNDHPFCLFNPQEDAQI----LEKEYGIPRRY 171 R+ K+LM ++P + + +SP+N P L PQE I L E P Sbjct: 145 GRMYTFRWKNLMDVIPDQDPADDTVQSPMNQDPLVLL-PQEQRDIVLDRLNDELDAPYTI 203 Query: 172 L-GTIMSP----WAAKRLHEFGGDI-----TKFRVVKVWPSILQQIAIAKTEPGDENNQD 221 G + P + K L + D+ ++++ S ++ + EP D+ NQD Sbjct: 204 QNGQSLDPASEFYMDKLLAHYNDDLEAVLQNHVEIIRLVASENKRQCVETFEPKDKKNQD 263 Query: 222 ISALVGKVDIRKLEHYAQNDPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQE 281 + L G V+ KL Y ++DP A+ YSGA C AN+G+ E+ K + L+ L A+QE Sbjct: 264 ETELTGDVNYSKLAVYGESDPRAFDYSGAFCNANRGLFSGEELLKLQREFLYDFLHASQE 323 Query: 282 GNYNGTEGISALPFNGIILAHSNESEWVTFRNNKNNEAFLDRVYIVKVPYCLRISEEIKI 341 + + +I+ +N E+ + ++ EAF DR V PY L EE +I Sbjct: 324 QTIKPKNN-PRIDIDEVIVGRTNMPEYREKKGDEKMEAFNDRTKRVDFPYVLEYDEESEI 382 Query: 342 YEKLLNHSELTHAPCAPGTLETLSRFSILSRLKEPE-NSSIYSKMRVYDGESLKDTDPKA 400 Y K+L ++++ P LE F +L+RL EP+ N+S+ K + Y+GE D Sbjct: 383 YRKMLRNADVPDMHIEPHALEMAGLFGVLTRLAEPDTNASLVQKAKAYNGELDDGDDVDV 442 Query: 401 KSYQE-YRDYAGVDEGMNGLSTRF-AFKILSRVFNFDHVE-VAANPVHLFYVLEQQIERE 457 + +E + + EGM+G+S RF +I + + H + +P+ +F E +E Sbjct: 443 RKLRENAEESTDIGEGMDGVSARFIGDEIAEAIMDATHRDRTYLSPLSVFSHFETNLENH 502 Query: 458 -QFPQE---QAERYLEFLKGYLIPKYAEFIGKEIQTAYLESYSEYGQNIFDRYVTYADFW 513 P+E Q RYLE ++ +Y E ++++ A E Q ++Y+ + + Sbjct: 503 GSIPEENLDQYHRYLEMVR----EEYRERAIEDVRHALAYDLDEI-QRQGEKYMDHVMAY 557 Query: 514 IQDQEYRDPDTG--QLFDRESLNAELEKIEKPAGISNPKDFRNEIVNFVLRARANNSGRN 571 I D D TG Q D L + EK++ P + DFR E+ N+V R + + Sbjct: 558 IDDATVEDALTGREQDPDETFLRSVEEKLDIPEDRKD--DFRQEVSNWVSRRAREGTSFD 615 Query: 572 PNWTSYEKLRTVIEKKMFSNTEELLPVISFNAKTSTDE--QKKHDDFVDRMMEKGYTRKQ 629 P+ ++LR +E+K++ + + I+F+A S +E + + +++ ++++GY++ Sbjct: 616 PH--DNDRLRRALERKLWEDKKH---NINFSALVSANELDDDERNAWIEALVDRGYSQAG 670 Query: 630 VRLLCEW 636 + + E+ Sbjct: 671 AQEVLEF 677 >UniRef50_A0MN77 Serine kinase n=1 Tax=Thermus phage phiYS40 RepID=A0MN77_9CAUD Length = 619 Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 158/557 (28%), Positives = 267/557 (47%), Gaps = 52/557 (9%) Query: 76 EEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMQLVPIYVL 135 +E +G++D I + ++ L+ A G + +++I+ +GPVG KS+ +K ++ Y Sbjct: 63 DELFGVDDKIREFMTILEAGANGHDVRRRIILFVGPVGTAKSTFVSIIKKALER---YSK 119 Query: 136 SANGER-----SPVNDHPFCLFNPQEDAQILEKEYGIPRRYLGTIMSPWAAKRLHEFG-G 189 + GE P+++ P L P++ KE+G+ + + P +L E Sbjct: 120 TEEGEIYAIEFCPIHEDPLNLI-PEDTRDDFYKEFGVK---IDQELCPVCRHKLKELKYE 175 Query: 190 DITKFRVVKVWPSILQQIAIAKTEPGDENNQDISALVGKVDIRKLEHYAQ-NDPDAYGYS 248 D++ VV+ S ++ IA P D +QD+S LVG + R ++ + P + ++ Sbjct: 176 DVSTVPVVRFTFSEAERRGIATFVPADWTSQDVSVLVGSENFRAVQELGDPSHPLGWNFN 235 Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G+L AN+GI EF+E+ KA +L PL+T QE + + + +++AH+N +E+ Sbjct: 236 GSLFVANRGIHEFIELHKAKPDLLFPLITVAQERKVK-VDRFGLIDVDEVLIAHTNYAEY 294 Query: 309 VTFRNNKNNEAFLDRVYIVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSRFS 368 F N K NEA DR + Y LR +E KIY+K+L T AP TL+ +S + Sbjct: 295 NKFVNKKENEALKDRTREINWIYNLRWDDEEKIYKKMLGE---TTYHLAPWTLKFISGIA 351 Query: 369 ILSRLKEPENSSIY---SKMRVYDGESLKDTDPKAKSYQEYR--DYAGVDEGMNGLSTRF 423 I+SRL P+ Y + +++Y+G+ Y EY + D+G G+S R Sbjct: 352 IMSRL-SPDRDKKYDLLTSLKLYNGDY-------GAMYSEYHVDEMKHPDDGKFGISPRV 403 Query: 424 AFKILSRVFNFDHV-EVAANPVHLFYVLEQQIEREQFPQEQAERYLEFLKGYLIPKYAEF 482 A LS F V P+ + LE+ I+ E +L LK ++ +Y +F Sbjct: 404 AVDALS----FASVGNTCVTPIRAYEKLEEIIKSGNVDIPHKE-FLA-LKDMILTEYNKF 457 Query: 483 IGKEIQTAYL-ESYSEYGQNIFDRYVTYADFWIQDQEYRDPDTGQLFDRESLNAELEKIE 541 I + A++ S++ Q DRY+ A +I ++ +DP TG E L IE Sbjct: 458 IKDAVFRAFIGSSFATEAQKYVDRYIENAQAFINGEKIKDPFTGNYV--EPDEKFLRSIE 515 Query: 542 KPAGISN--PKDFRNEIVNFVLRARANN---SGRNPNWTSYEKLRTVIEKKMFSNTEELL 596 + GIS KDFR +I+ +A N G+ + + L+ IE K+F + + Sbjct: 516 ELVGISKEAAKDFRMKIL-----VKATNLLRMGKKITYDIHPLLKEAIENKIFGDRATFI 570 Query: 597 PVISFNAKTSTDEQKKH 613 S + T+EQ+KH Sbjct: 571 RG-SITSVVKTEEQEKH 586 >UniRef50_D0LUZ5 Putative serine protein kinase, PrkA n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LUZ5_HALO1 Length = 765 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 78/371 (21%), Positives = 163/371 (43%), Gaps = 56/371 (15%) Query: 245 YGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSN 304 + Y G L AN+G++E+ ++ K P++ LLT ++ + + + + L + + L SN Sbjct: 331 FEYGGELVGANRGLIEYSDLLKRPLEAYKYLLTTVEQASVSLSS--ATLFLDLVFLGTSN 388 Query: 305 ESEWVTFRNNKNNEAFLDRVYIVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETL 364 E F+ +F R+ +V+VPY L ++E +IY++ L + AP Sbjct: 389 EIHLNAFKETAEFLSFRGRLELVRVPYLLDFTQEEQIYQQKLEEAA-GRRHVAPHCAHVA 447 Query: 365 SRFSILSRLKEP-------------------ENSSIYSKMRVYDG-------ESLKDTDP 398 + +++L+R+++P E + +Y+ +V DG E + D Sbjct: 448 ALWAVLTRMRKPQAERYPAQLSEMIGRLTPLEKAELYASGQVPDGLDGRRAKELRRAIDD 507 Query: 399 KAKSYQEYRDYAGVDEGMNGLSTRFA------------FKILSRVFNFDHVEVAANPVHL 446 + Y Y EG +G S R ++ +S + D +E + Sbjct: 508 IWRESDPYPFY----EGRSGASPREMQVVLFNAANSPNYRYVSPLAILDEIEELIKQASV 563 Query: 447 FYVLEQQIEREQFPQEQAERYLEFLKGYLIPKYAEFIGKEIQTAY-LESYSEYGQNIFDR 505 + L+Q ++ + R++E ++ L+ E I E+++A L EY + +F+R Sbjct: 564 YDFLKQDVQPGGY--HDHVRFIEVVRERLV----ERIDDEVRSALGLIEEREY-ERLFER 616 Query: 506 YVTYADFWIQDQEYRDPDTGQLFDRESLNAELEKIEKPAGI-SNPKDFRNEIVNFVLRAR 564 Y+ + W + + +P TG E+ A + ++E + +DFR ++++ + Sbjct: 617 YIVHVLHWTKKERVLNPSTGAY--EEADAALMREVESTLALEGEAEDFRRDLISKIGAWS 674 Query: 565 ANNSGRNPNWT 575 ++ P++T Sbjct: 675 LDHPNEKPDYT 685 >UniRef50_Q08Z64 Serine protein kinase, putative n=5 Tax=Cystobacterineae RepID=Q08Z64_STIAU Length = 750 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 89/368 (24%), Positives = 171/368 (46%), Gaps = 74/368 (20%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPF----NGIILAHSN 304 G L AN+G++E+ ++ K P++ LL ++ T + PF + +++A +N Sbjct: 321 GPLVHANRGMIEYSDLLKRPLEAFKYLL------GFSETSQVPLEPFVLQLDEVLIASAN 374 Query: 305 ESEWVTFRNNKNNEAFLDRVYIVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETL 364 E F+ + +F R+ +V+VPY E +IY+ + + + AP E Sbjct: 375 EKHLGAFKELPDFASFKGRIELVRVPYLRHYKLEQEIYDAQITSTSVGKH-VAPHATEVA 433 Query: 365 SRFSILSRLKEP-------------ENSSIYSKMRVY-DGE-----SLKDTDP----KAK 401 + +++L+RLK+P ++ + KM +Y +G+ SL + + + Sbjct: 434 AMWAVLTRLKKPIPERYAADVKELVDHVTPLEKMHLYAEGKAPHRLSLANIKELKRLRTE 493 Query: 402 SYQEYRDYAGVDEGMNGLSTRFAFKILSRVFNFDHVEVAANP----VHLFYVLEQQIERE 457 Y+E Y EG +G S R +I + +FN A +P ++ VLE E E Sbjct: 494 LYEESDTYPNY-EGRSGASAR---EIKTALFN-----AAQSPDYKCLNALAVLE---ELE 541 Query: 458 QFPQEQAERYLEFLKGYLIPKY---AEFIGKEIQTAYLE-------------SYSEYGQN 501 Q+++ EFL+ ++ Y AEF+ + ++ YL S +Y + Sbjct: 542 AICQDKS--VYEFLQQEVVDHYHDHAEFV-RAVEGEYLNRVDSEVRDSMGLVSEDQY-RE 597 Query: 502 IFDRYVTYADFWIQDQEYRDPDTGQLFDR--ESLNAELEKIEKPAGISNPKDFRNEIVNF 559 + +RY+ + W++ ++ R+ TG++ DR E AE+E I P G +P ++R +++ Sbjct: 598 LVERYLQHVSHWVRGEKMRNRVTGEM-DRPDEGRMAEMEAIIMPKG-EDPGEYRRGLISS 655 Query: 560 VLRARANN 567 + R +N Sbjct: 656 IGAHRLDN 663 >UniRef50_A9GWJ6 Protein kinase n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GWJ6_SORC5 Length = 800 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 70/307 (22%), Positives = 136/307 (44%), Gaps = 36/307 (11%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G L A G++EF ++ K P+ L + G + + + N +++ +N+ Sbjct: 360 GELIEAAGGVLEFSDLLKRPLDAFRYLQLTLETGEVSLPQ--QTVQTNVVMIGSANDVHL 417 Query: 309 VTFRNNKNNEAFLDRVYIVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSRFS 368 FR + +F R +++ PY +E IY+ + H AP ++F+ Sbjct: 418 NAFREHPEFPSFRGRFELLRAPYLRSYPDEQAIYDTQIVPFVTRH--VAPHATRVAAQFA 475 Query: 369 ILSRLKEPEN-----------SSIYS--KMRV---------YDGESLKDTDPKAKSYQEY 406 +L+R+++PE SS+ + KM + +D E+ K ++ Sbjct: 476 VLTRMRQPEAKRYPDALAPLVSSLTAVEKMELFATGTAPERFDAEAQKVLRAGIEAIYHE 535 Query: 407 RDYAGVD-EGMNGLSTR-FAFKILSRVFNFDHVEVAANPV--HLFYVLEQQIEREQFPQE 462 D A VD EG G+S R +L + DH ++ V L + ++Q E + ++ Sbjct: 536 SD-ASVDFEGRLGVSPREVRTLLLDAAQSEDHACLSPFAVLSELDALCKRQAEYDWLKEK 594 Query: 463 Q-AERYLE--FLKGYLIPKYAEFIGKEIQTAY-LESYSEYGQNIFDRYVTYADFWIQDQE 518 Q A Y + + + + + +E++TA L + Y + +FDRYV++ W++ ++ Sbjct: 595 QLAGGYHDHRLFREVVRTRLLDTTEEEMRTASGLVDETRYAE-LFDRYVSHVGVWVKGEK 653 Query: 519 YRDPDTG 525 R+P TG Sbjct: 654 IRNPHTG 660 >UniRef50_A6G891 Putative serine protein kinase, PrkA n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G891_9DELT Length = 780 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 44/175 (25%), Positives = 82/175 (46%), Gaps = 11/175 (6%) Query: 245 YGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSN 304 +G G L A +G++ F ++ K P + LLTAT+ G + L + + +N Sbjct: 319 HGTQGDLVDAQRGVLNFSDLLKRPYEHYKYLLTATESGRVVLDHLL--LGLDVVFTGSAN 376 Query: 305 ESEWVTFRNNKNNE--AFLDRVYIVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLE 362 + + + FR ++ E +F R+ ++ VPY E KIY++ + L AP Sbjct: 377 DIKLLEFRALRSAEYQSFRARLNLISVPYLRDYRVERKIYQEQVG-DLLRGVHIAPHVPR 435 Query: 363 TLSRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMN 417 L+ + +++RL+ P++ K+ +L P AK+ + Y V EG++ Sbjct: 436 ILALWGVMTRLRPPDSEKYPKKISA----ALDKLTPLAKA--DLYAYGRVPEGLS 484 >UniRef50_D2EEA6 Putative serine protein kinase, PrkA n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EEA6_9EURY Length = 530 Score = 42.4 bits (98), Expect = 0.052, Method: Compositional matrix adjust. Identities = 41/163 (25%), Positives = 80/163 (49%), Gaps = 21/163 (12%) Query: 246 GYSGALCRANQGIMEFVEMFKAPIKVLHP----LLTATQEGNYNGTEGISALPFNGIILA 301 + + +N+ I+ + K+ ++ ++P L + N++ G + +P + +IL Sbjct: 101 SFINVIMNSNRSILA-ISADKSKLEDINPKVFQLFNNIYDNNFSDNLG-NKVPLDSLILM 158 Query: 302 HSNESEWVTFRNNKNNEA--FLDRVYIVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPG 359 HSNES ++ ++ E+ L+R+ V V L SEE+K+ ++ S + P Sbjct: 159 HSNES-FMELNEDRKRESRPLLERIIRVDVRRNLSYSEEMKVAQE----SNMPIEKVVPK 213 Query: 360 TLETLSRFSILSRLK-----EPENSSIYSKMRV---YDGESLK 394 LE +S+ ++LSRL EN I + + + YD ++LK Sbjct: 214 FLEYISKLNVLSRLSFDLIYNKENQYINNVLELLDYYDSDNLK 256 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0ACY5 Uncharacterized protein yeaG n=433 Tax=Proteobac... 840 0.0 UniRef50_Q3J884 PrkA serine kinase n=28 Tax=Bacteria RepID=Q3J88... 665 0.0 UniRef50_D2R2R0 Putative serine protein kinase, PrkA n=3 Tax=Bac... 648 0.0 UniRef50_A9WHT0 PrkA AAA domain protein n=23 Tax=Bacteria RepID=... 643 0.0 UniRef50_UPI00016C05A7 Serine protein kinase (prkA protein), P-l... 638 0.0 UniRef50_P39134 Protein prkA n=98 Tax=Bacteria RepID=PRKA_BACSU 603 e-171 UniRef50_A4BNQ6 PrkA protein n=2 Tax=cellular organisms RepID=A4... 547 e-154 UniRef50_A0MN77 Serine kinase n=1 Tax=Thermus phage phiYS40 RepI... 537 e-151 UniRef50_Q18FZ9 Predicted serine protein kinase n=11 Tax=Halobac... 526 e-148 UniRef50_Q08Z64 Serine protein kinase, putative n=5 Tax=Cystobac... 327 1e-87 UniRef50_D0LUZ5 Putative serine protein kinase, PrkA n=1 Tax=Hal... 310 8e-83 UniRef50_A9GWJ6 Protein kinase n=1 Tax=Sorangium cellulosum 'So ... 302 4e-80 UniRef50_A8TM27 Putative Ser protein kinase n=1 Tax=alpha proteo... 272 4e-71 UniRef50_A6G891 Putative serine protein kinase, PrkA n=1 Tax=Ple... 268 4e-70 Sequences not found previously or not previously below threshold: UniRef50_C0QJY5 PrkA2 n=11 Tax=Deltaproteobacteria RepID=C0QJY5_... 164 7e-39 UniRef50_Q3IPY4 Predicted serine protein kinase 2 n=11 Tax=Halob... 164 1e-38 UniRef50_C0QJY2 Sensory box histidine kinase/response regulator ... 96 5e-18 UniRef50_B8FIY2 Putative serine protein kinase, PrkA n=10 Tax=De... 84 1e-14 UniRef50_D2EEA4 Putative serine protein kinase, PrkA n=1 Tax=Can... 77 2e-12 UniRef50_Q8TYU9 Mg-chelatase subunit ChlI and Chld (MoxR-like AT... 74 1e-11 UniRef50_C8SCW8 ATPase associated with various cellular activiti... 64 2e-08 UniRef50_D2S953 Putative magnesium chelatase n=1 Tax=Geodermatop... 61 2e-07 UniRef50_Q1ILJ3 Magnesium protoporphyrin chelatase, putative n=9... 60 3e-07 UniRef50_Q74N18 NEQ401 n=1 Tax=Nanoarchaeum equitans RepID=Q74N1... 59 7e-07 UniRef50_D2EEA6 Putative serine protein kinase, PrkA n=1 Tax=Can... 56 5e-06 UniRef50_D0L6A4 Mg-chelatase subunit ChlI-like protein n=20 Tax=... 55 1e-05 UniRef50_Q2J637 Magnesium chelatase, ChlI subunit n=45 Tax=Actin... 54 2e-05 UniRef50_Q7UYY5 Probable magnesium protoporphyrin chelatase n=4 ... 54 2e-05 UniRef50_P32812 Uncharacterized protein in gldA 5'region (Fragme... 53 3e-05 UniRef50_Q8TXP4 Predicted ATP-dependent protease n=1 Tax=Methano... 53 3e-05 UniRef50_A8MC50 ATPase associated with various cellular activiti... 52 6e-05 UniRef50_C9XJV7 Putative sigma-54-dependent transcriptional regu... 51 2e-04 UniRef50_C0GH19 Sigma54 specific transcriptional regulator, Fis ... 49 5e-04 UniRef50_B9L3Z1 Magnesium chelatase subunit ChlI n=2 Tax=Bacteri... 48 0.001 UniRef50_D1CAP1 Mg-chelatase subunit ChlI-like protein n=3 Tax=B... 48 0.001 UniRef50_A0RXY9 Mg-chelatase subunit n=1 Tax=Cenarchaeum symbios... 47 0.002 UniRef50_B3QXN8 Magnesium chelatase, subunit ChlI family n=11 Ta... 47 0.002 UniRef50_Q4T8U0 Lon protease homolog (Fragment) n=4 Tax=Clupeoce... 47 0.003 UniRef50_Q7KUT2 Lon protease homolog n=10 Tax=Coelomata RepID=Q7... 47 0.003 UniRef50_D0LXC8 Sigma54 specific transcriptional regulator, Fis ... 47 0.003 UniRef50_C0QJP8 Sigma-54 dependent DNA-binding response regulato... 46 0.003 UniRef50_B5GST7 Regulatory protein n=1 Tax=Streptomyces clavulig... 46 0.003 UniRef50_D2EEA3 Putative serine protein kinase, PrkA n=1 Tax=Can... 46 0.003 UniRef50_Q2S060 Magnesium chelatase, subunit ChlI family n=6 Tax... 46 0.005 UniRef50_C6DXM3 Sigma-54 interaction domain family protein n=3 T... 46 0.006 UniRef50_D1BA81 ATP-dependent protease La n=2 Tax=Synergistaceae... 46 0.007 UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional... 46 0.007 UniRef50_Q6C0B5 Lon protease homolog n=1 Tax=Yarrowia lipolytica... 45 0.008 UniRef50_Q10MJ8 Lon protease homolog n=4 Tax=Oryza sativa RepID=... 45 0.009 UniRef50_Q21NY8 Sigma-54 factor, interaction region n=9 Tax=Bact... 45 0.010 UniRef50_A8XFM8 Lon protease homolog n=1 Tax=Caenorhabditis brig... 45 0.011 UniRef50_Q188N1 Putative arginine utilization sigma-54 dependent... 45 0.012 UniRef50_B7H394 Nitrogen assimilation regulatory protein n=11 Ta... 44 0.013 UniRef50_O44952 Lon protease homolog, mitochondrial n=2 Tax=Caen... 44 0.013 UniRef50_C6PP25 Proprionate catabolism activator, Fis family n=1... 44 0.015 UniRef50_UPI000180C54F PREDICTED: similar to Lon n=1 Tax=Ciona i... 44 0.015 UniRef50_D2RDR4 ABC transporter related protein n=4 Tax=Archaea ... 44 0.016 UniRef50_B2A1V9 PAS modulated sigma54 specific transcriptional r... 44 0.018 UniRef50_Q7MCP4 Sigma-54 dependent transcriptional regulator n=4... 44 0.022 UniRef50_P36776 Lon protease homolog, mitochondrial n=33 Tax=Coe... 44 0.023 UniRef50_B0JWY8 Putative uncharacterized protein n=1 Tax=Microcy... 44 0.024 UniRef50_B3KXS5 Lon protease homolog n=22 Tax=cellular organisms... 44 0.024 UniRef50_C3YBR1 Lon protease homolog n=2 Tax=Eumetazoa RepID=C3Y... 44 0.026 UniRef50_Q11Y64 Two-component response regulator for zraP n=1 Ta... 43 0.038 UniRef50_A6CFV8 Two component, sigma54 specific, transcriptional... 43 0.038 UniRef50_A9VKT7 PAS modulated sigma54 specific transcriptional r... 43 0.042 UniRef50_Q026M7 Transcriptional regulator, NifA subfamily, Fis F... 42 0.049 UniRef50_A6VFF7 Glycine betaine/L-proline ABC transporter, ATPas... 42 0.055 UniRef50_B1T833 Putative sigma54 specific transcriptional regula... 42 0.061 UniRef50_O83536 ATP-dependent protease La n=4 Tax=Treponema RepI... 42 0.068 UniRef50_B7DTW4 GAF modulated sigma54 specific transcriptional r... 42 0.068 UniRef50_Q2YPX3 ATP-dependent protease La n=377 Tax=Bacteria Rep... 42 0.074 UniRef50_O51558 ATP-dependent protease La homolog n=25 Tax=Borre... 42 0.077 UniRef50_B5Y8Q8 ATP-dependent protease La n=5 Tax=root RepID=B5Y... 42 0.092 UniRef50_Q9ZD92 ATP-dependent protease La n=15 Tax=Rickettsieae ... 42 0.092 >UniRef50_P0ACY5 Uncharacterized protein yeaG n=433 Tax=Proteobacteria RepID=YEAG_ECO57 Length = 644 Score = 840 bits (2169), Expect = 0.0, Method: Composition-based stats. Identities = 644/644 (100%), Positives = 644/644 (100%) Query: 1 MNIFDHYRQRYEAAKDEEFTLQEFLTTCRQDRSAYANAAERLLMAIGEPVMVDTAQEPRL 60 MNIFDHYRQRYEAAKDEEFTLQEFLTTCRQDRSAYANAAERLLMAIGEPVMVDTAQEPRL Sbjct: 1 MNIFDHYRQRYEAAKDEEFTLQEFLTTCRQDRSAYANAAERLLMAIGEPVMVDTAQEPRL 60 Query: 61 SRLFSNRVIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLA 120 SRLFSNRVIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLA Sbjct: 61 SRLFSNRVIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLA 120 Query: 121 ERLKSLMQLVPIYVLSANGERSPVNDHPFCLFNPQEDAQILEKEYGIPRRYLGTIMSPWA 180 ERLKSLMQLVPIYVLSANGERSPVNDHPFCLFNPQEDAQILEKEYGIPRRYLGTIMSPWA Sbjct: 121 ERLKSLMQLVPIYVLSANGERSPVNDHPFCLFNPQEDAQILEKEYGIPRRYLGTIMSPWA 180 Query: 181 AKRLHEFGGDITKFRVVKVWPSILQQIAIAKTEPGDENNQDISALVGKVDIRKLEHYAQN 240 AKRLHEFGGDITKFRVVKVWPSILQQIAIAKTEPGDENNQDISALVGKVDIRKLEHYAQN Sbjct: 181 AKRLHEFGGDITKFRVVKVWPSILQQIAIAKTEPGDENNQDISALVGKVDIRKLEHYAQN 240 Query: 241 DPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIIL 300 DPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIIL Sbjct: 241 DPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIIL 300 Query: 301 AHSNESEWVTFRNNKNNEAFLDRVYIVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGT 360 AHSNESEWVTFRNNKNNEAFLDRVYIVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGT Sbjct: 301 AHSNESEWVTFRNNKNNEAFLDRVYIVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGT 360 Query: 361 LETLSRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLS 420 LETLSRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLS Sbjct: 361 LETLSRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLS 420 Query: 421 TRFAFKILSRVFNFDHVEVAANPVHLFYVLEQQIEREQFPQEQAERYLEFLKGYLIPKYA 480 TRFAFKILSRVFNFDHVEVAANPVHLFYVLEQQIEREQFPQEQAERYLEFLKGYLIPKYA Sbjct: 421 TRFAFKILSRVFNFDHVEVAANPVHLFYVLEQQIEREQFPQEQAERYLEFLKGYLIPKYA 480 Query: 481 EFIGKEIQTAYLESYSEYGQNIFDRYVTYADFWIQDQEYRDPDTGQLFDRESLNAELEKI 540 EFIGKEIQTAYLESYSEYGQNIFDRYVTYADFWIQDQEYRDPDTGQLFDRESLNAELEKI Sbjct: 481 EFIGKEIQTAYLESYSEYGQNIFDRYVTYADFWIQDQEYRDPDTGQLFDRESLNAELEKI 540 Query: 541 EKPAGISNPKDFRNEIVNFVLRARANNSGRNPNWTSYEKLRTVIEKKMFSNTEELLPVIS 600 EKPAGISNPKDFRNEIVNFVLRARANNSGRNPNWTSYEKLRTVIEKKMFSNTEELLPVIS Sbjct: 541 EKPAGISNPKDFRNEIVNFVLRARANNSGRNPNWTSYEKLRTVIEKKMFSNTEELLPVIS 600 Query: 601 FNAKTSTDEQKKHDDFVDRMMEKGYTRKQVRLLCEWYLRVRKSS 644 FNAKTSTDEQKKHDDFVDRMMEKGYTRKQVRLLCEWYLRVRKSS Sbjct: 601 FNAKTSTDEQKKHDDFVDRMMEKGYTRKQVRLLCEWYLRVRKSS 644 >UniRef50_Q3J884 PrkA serine kinase n=28 Tax=Bacteria RepID=Q3J884_NITOC Length = 643 Score = 665 bits (1716), Expect = 0.0, Method: Composition-based stats. Identities = 212/646 (32%), Positives = 334/646 (51%), Gaps = 27/646 (4%) Query: 2 NIFDHYRQRYEAAKDEEF---TLQEFLTTCRQDRSAYANAAER---LLMAIGEPVMVDTA 55 N F Q+ A ++ + T ++L +++ A R ++M G ++ A Sbjct: 6 NGFTEIIQKDRARRERQEWRGTFVDYLEKVKKEPLLARLAHSRVYDMIMRKGAED-INAA 64 Query: 56 QEPRLSRLFSNRVIARYPAF-EEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGG 114 +P + RL+ + I Y F +EF+G+E + Q+V Y A+ EE +Q+LYL+GPVG Sbjct: 65 DDPHVKRLYGDEPIKVYSFFKDEFFGIERTLAQLVRYFHSASLHGEESRQVLYLMGPVGA 124 Query: 115 GKSSLAERLKSLMQL-VPIYVLSANGERSPVNDHPFCLFNPQEDAQILEKEYGIPRRYLG 173 GKSSL ERL ++ PIY + E P+ + P L P+ + EK + ++ Sbjct: 125 GKSSLIERLHRGLENVEPIYAI----EGCPMREEPLHLL-PRHLRKEFEKMLDV---HIE 176 Query: 174 TIMSPWAAKRL-HEFGGDITKFRVVKVWPSILQQIAIAKTEPGDENNQDISALVGKVDIR 232 + P RL EF G V+ V S + I P D NNQD S L+G DI Sbjct: 177 GDLCPVCRFRLKEEFDGRYEDVPVITVDFSKRDRRGIGVVPPVDPNNQDTSVLIGSEDIS 236 Query: 233 KLEHYAQNDPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISA 292 KL+ Y++ DP +GA N+G++EF+E+FK + LH ++TATQE Sbjct: 237 KLDLYSEGDPRVLDLNGAFNVGNRGVVEFIEVFKNETEYLHSMITATQEKFVPAPGRHGT 296 Query: 293 LPFNGIILAHSNESEWVTFRNNKNNEAFLDRVYIVKVPYCLRISEEIKIYEKLLNHSELT 352 + + I+AHSNE+EW F+ + NEA LDR+ +VKVPY LR+SEEIKIY KLL+HS+ Sbjct: 297 VYVDTCIVAHSNEAEWQKFKADHTNEAILDRIVVVKVPYNLRLSEEIKIYGKLLHHSDFR 356 Query: 353 HAPCAPGTLETLSRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGV 412 A AP TLE S F+ILSRL+ + +K+R+Y+GE + + K + A Sbjct: 357 -AHIAPHTLEVASMFAILSRLEPTPKCDLITKLRLYNGEEVVEKGSTLKINAKELQEAAS 415 Query: 413 DEGMNGLSTRFAFKILSRVFNFDHVEVAANPVHLFYVLEQQIEREQFPQEQAERYLEFLK 472 EGM G+STRF K L E NP+++ L +++ + + + YLE L+ Sbjct: 416 REGMFGISTRFIMKALDNALA--DSEEGINPINVREALIVMVKQSELADDTRKHYLELLQ 473 Query: 473 GYLIPKYAEFIGKEIQTAYLESYSEYGQNIFDRYVTYADFWIQDQEYRDPDTGQLFDRES 532 L Y E + KEI A++ SY E + +F Y+ +A+ ++ +D DT + + Sbjct: 474 DTLHKVYLEILEKEITKAFVYSYEEQAETLFQNYLDHAEAYVNKTRVKDWDTREEL--QP 531 Query: 533 LNAELEKIEKPAGI--SNPKDFRNEIVNFVLRARANNSGRNPNWTSYEKLRTVIEKKMFS 590 L+ +E+ I S FR E++ F+ A G ++ SYE L+ IEKK+ S Sbjct: 532 DENFLKSVEEQIAIVGSAADGFRQEVIAFL--WAATRRGEKVSYQSYEPLKEAIEKKLTS 589 Query: 591 NTEELLPVISFNAKTSTDEQKKHDDFVDRMMEKGYTRKQVRLLCEW 636 + +L +I+ + ++ KK+DD V ++E+GY ++ ++ Sbjct: 590 SVRDLSRIITKSRTRDEEQAKKYDDLVKNLLERGYNEHSAEVVLKY 635 >UniRef50_D2R2R0 Putative serine protein kinase, PrkA n=3 Tax=Bacteria RepID=D2R2R0_9PLAN Length = 683 Score = 648 bits (1672), Expect = 0.0, Method: Composition-based stats. Identities = 174/659 (26%), Positives = 318/659 (48%), Gaps = 58/659 (8%) Query: 20 TLQEFLTTCRQDRSAYANAAER---LLMAIGEPVMVDTAQEPRL-SRLFSNRVIARYPAF 75 T +E+L R NA +R ++ + G V ++ E R+ R F + Sbjct: 28 TFEEYLDLVRTSPLVARNAFQRVYDMIQSYGSDVYEESRGERRVSYRFFQD---PDNGGR 84 Query: 76 EEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMQLV----- 130 + +G+++++E V+ +K AA+G +K++L L GPVG KS++A LK ++ Sbjct: 85 DAVFGLDESLEAFVNAIKSAAKGYGIEKRVLLLHGPVGSSKSTIARLLKRGLERYTTTDE 144 Query: 131 -PIYVLSANGER-------SPVNDHPFCLFNPQEDAQIL-------EKEYGIPRRYLGTI 175 +Y L E P+++ P L P+ + + G + +G Sbjct: 145 GALYTLGWIDEESPEDVHWCPMHEEPLHLI-PERFRDDVTASLNEGRDDDGYKVKIVGD- 202 Query: 176 MSPWAA----KRLHEFGGDIT----KFRVVKVWPSILQQIAIAKTEPGDENNQDISALVG 227 + P+ +RL ++GGD T RV ++ + +I I +P DE NQD + L G Sbjct: 203 LCPFCRFMYTERLKKYGGDWTRVIQDIRVKRIVLNEQDRIGIGTFQPKDEKNQDSTELTG 262 Query: 228 KVDIRKLEHYAQN-DPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNG 286 ++ RK+ Y + DP A+ + G AN+GI+EF+E+ K + L+ LL A+QE Sbjct: 263 DINYRKIAQYGSDSDPRAFNFDGEFNVANRGIIEFIEVLKLDVAFLYDLLGASQEHKVK- 321 Query: 287 TEGISALPFNGIILAHSNESEWVTFRNNKNNEAFLDRVYIVKVPYCLRISEEIKIYEKLL 346 + + + +I+ H+NE E+ +NN+ EA DR + VPY R+S+EI+IYEK Sbjct: 322 PKKFAQTDIDEVIIGHTNEPEYRRLQNNEFMEALRDRTVKIDVPYVTRLSDEIRIYEKDY 381 Query: 347 NHSELTHAPCAPGTLETLSRFSILSRLKEPENSS--IYSKMRVYDGESLKD-TDPKAKSY 403 N ++ AP T+E + +++L+RL++P N+S + K+++Y+G++L T+ K Sbjct: 382 NREKVKGKHIAPHTIEMAAMWAVLTRLEQPNNASLTLLQKLKLYNGKTLPGFTEENIKEL 441 Query: 404 QEYRDYAGVDEGMNGLSTRFAFKILSRVFNFDHVEVAANPVHLFYVLEQQIEREQF--PQ 461 +E + EG++G+S R+ +S + NP + LE ++ + Sbjct: 442 RE----EAITEGLHGISPRYVQDKISNALVVHLDSQSINPFMVLNELEAGLKHHSLITSE 497 Query: 462 EQAERYLEFLKGYLIPKYAEFIGKEIQTAYLESYSEYGQNIFDRYVTYADFWIQDQEYRD 521 E RY E L G + +Y + E+Q A + + + + + Y+ + Q ++ R+ Sbjct: 498 ETRSRYREML-GVVKEEYENIVKNEVQRA-IAADEDALKRLCGNYIDNVKAYTQREKVRN 555 Query: 522 PDTGQL--FDRESLNAELEKIEKPAGISNPKDFRNEIVNFVLRARANNSGRNPNWTSYEK 579 TGQ D + + EKI+ P S DFR EI+N++ A G+ ++ S E+ Sbjct: 556 KFTGQYDEPDERLMRSIEEKIDIPE--SRKDDFRREIMNYI--AAQLMDGKMFDYRSNER 611 Query: 580 LRTVIEKKMFSNTEELLPVISFNAK-TSTDEQKKHDDFVDRMM-EKGYTRKQVRLLCEW 636 L ++ K+F + ++ + + S ++ D Q K D R++ + GY + + + Sbjct: 612 LYKALQLKLFEDQKDTIKLTSLVSQVVDKDTQAKIDVVKGRLIRDFGYDEESATDVLNY 670 >UniRef50_A9WHT0 PrkA AAA domain protein n=23 Tax=Bacteria RepID=A9WHT0_CHLAA Length = 692 Score = 643 bits (1659), Expect = 0.0, Method: Composition-based stats. Identities = 170/667 (25%), Positives = 309/667 (46%), Gaps = 65/667 (9%) Query: 20 TLQEFLTTCRQDRSAYANAAER---LLMAIGEPVMVDTAQEPRLSRLFSNRVIARYPAFE 76 T E+L ++ NA +R ++M+ G +D + + FS+ + + Sbjct: 29 TFSEYLDIVVRNPRVARNAFQRVYDMIMSYGTEEFIDAKKRLIRYKFFSD---ESFDGDD 85 Query: 77 EFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM------QLV 130 +G+E + ++V++ K AA+G +K++L L GPVG KS++ RLK + + Sbjct: 86 AIFGLEIPLMRLVNFFKGAARGYGTEKRVLLLHGPVGSSKSTIVRRLKRGLEHYSRTEEG 145 Query: 131 PIYV-------------------LSANGERSPVNDHPFCLFNPQEDAQILEK--EYGIPR 169 +Y A E+ P+++ P L + +E+ E P Sbjct: 146 ALYTYDWYPGVIENHDTFDWRQVPEAEWEKCPMHEEPLHLIPRELRTTFIERLNETLEPD 205 Query: 170 RYLGTIMSPWAAKRLH------EFGGDI----TKFRVVKVWPSILQQIAIAKTEPGDENN 219 + R H + GD RV ++ S +I I +P DE N Sbjct: 206 HQIRIEGDLCPVCRFHFRELMQRYDGDWLKVMNHVRVRRLVFSEQDRIGIGTFQPKDEKN 265 Query: 220 QDISALVGKVDIRKLEHYAQN-DPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTA 278 QD + L G ++ RK+ Y + DP A+ + G AN+GI+EFVEM K + L+ LL A Sbjct: 266 QDSTELTGDINYRKIAIYGSDSDPRAFNFDGEFNIANRGIIEFVEMLKLDVAFLYDLLGA 325 Query: 279 TQEGNYNGTEGISALPFNGIILAHSNESEWVTFRNNKNNEAFLDRVYIVKVPYCLRISEE 338 +QE ++ + + +I+ H+NE E+ NN+ EA DR + +PY R+ +E Sbjct: 326 SQEHRIK-SKKFAQTDIDEVIIGHTNEPEYRRLENNEFMEALKDRTVRIDIPYVTRLRDE 384 Query: 339 IKIYEKLLNHSELTHAPCAPGTLETLSRFSILSRLKEPE--NSSIYSKMRVYDGESLKD- 395 ++IYE+ N ++ AP TLE + +++L+RL+EP+ N ++ K+++Y+G++L Sbjct: 385 VRIYERDFNKKKVR-VHIAPHTLEMAAMWAVLTRLEEPKKPNLTLLQKLKLYNGKTLPGF 443 Query: 396 TDPKAKSYQEYRDYAGVDEGMNGLSTRFAFKILSRVFNFDHVEVAANPVHLFYVLEQQIE 455 T+ K ++ V EGM G+S R+ +S + E NP + LE ++ Sbjct: 444 TEDNIKELRK----EAVREGMEGISPRYIQDKISNALVSNQEEGYINPFMVLNELESGLK 499 Query: 456 REQF--PQEQAERYLEFLKGYLIPKYAEFIGKEIQTAYLESYSEYGQNIFDRYVTYADFW 513 +EQ +RY + L + +Y E + E+Q A + + E + + Y+ + Sbjct: 500 NHALITDEEQRKRYRDLL-AIVREEYTEIVKNEVQRA-ISADEEAIKRLCANYIDNIKAY 557 Query: 514 IQDQEYRDPDTGQLFDRESLNAELEKIEKPAGI--SNPKDFRNEIVNFVLRARANNSGRN 571 Q ++ R+ TGQ E + IE+ I S DFR EI+N++ G+ Sbjct: 558 TQREKVRNRYTGQY--EEPDERLMRSIEEKIDIPESRKDDFRREIMNYIG--ALAIEGKT 613 Query: 572 PNWTSYEKLRTVIEKKMFSNTEELLPVISFNAKT-STDEQKKHDDFVDRMM-EKGYTRKQ 629 ++ + E+L +E K+F + ++ + + S ++ D Q+K D R++ + GY + Sbjct: 614 FDYRTNERLHKALELKLFEDQKDSIKLTSLVSRVIDRDTQEKIDVVKARLIRDFGYNEQS 673 Query: 630 VRLLCEW 636 + + Sbjct: 674 ATDVLNY 680 >UniRef50_UPI00016C05A7 Serine protein kinase (prkA protein), P-loop containing n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C05A7 Length = 589 Score = 638 bits (1645), Expect = 0.0, Method: Composition-based stats. Identities = 193/612 (31%), Positives = 315/612 (51%), Gaps = 41/612 (6%) Query: 26 TTCRQDRSAYANAAERLLMAIGEPVMVDTAQEPRLSRLFSNRVIARYPAFEEFYGMEDAI 85 T + D+S E L + +P + A + RL++ ++ + F+GME+ + Sbjct: 10 TRIQTDKSLNITFLEYLYILDKDPTIYKLAHQ----RLYAQLILNTFE--NNFFGMENTL 63 Query: 86 EQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMQLVP-IYVLSANGERSPV 144 I +Y AA G EE +QILYL+GPVG GKSSL + +K L++ P IY L P+ Sbjct: 64 TSIKNYFFAAANGGEEARQILYLVGPVGAGKSSLIDSIKQLLENSPAIYHLDG----CPM 119 Query: 145 NDHPFCLFNPQEDAQILEKEYGIPRRYLGTIMSPWAAKRLHEFGGDITKFRVVKVWPSIL 204 ++ P L P++ + E G+ + G + + +HEF G F + S+ Sbjct: 120 HEEPLHLI-PKQIRKHFEDALGL--KIQGDLCPKCKYRLIHEFNGKYENFPITSSKFSVS 176 Query: 205 QQIAIAKTEPGDENNQDISALVGKVDIRKLEHYAQNDPDAYGYSGALCRANQGIMEFVEM 264 +++ I P D NNQD S L+G VDI K++ Y ++DP + +GA AN+GI+EF+E+ Sbjct: 177 KRLGIGVVPPVDSNNQDTSILIGSVDISKMDLYPEDDPRVFSLNGAFHAANRGIIEFIEV 236 Query: 265 FKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEWVTFRNNKNNEAFLDRV 324 FK ++ L+ +LTATQE L F+GIILAHSNE+EW F+ + NEA LDR+ Sbjct: 237 FKNDVEYLYTMLTATQEKLIPSPSRGEMLYFDGIILAHSNEAEWNKFKADPTNEAILDRI 296 Query: 325 YIVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSRFSILSRLKEPENSSIYSK 384 ++VPYCL + +EIKIY+K L + AP TL ++F+IL+RL +N +++K Sbjct: 297 VKIEVPYCLILDDEIKIYKKFLEQTNFG-VHIAPHTLRVAAQFAILTRLLPSDNVDLFTK 355 Query: 385 MRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLSTRFAFKILSRVFNFDHVEVAANPV 444 +++Y+ E T EGM G+S RF K + F P Sbjct: 356 LKIYNSEE---TGVDISKVAH--------EGMKGISVRFIMKTFGKAFA--SCGKCLTPP 402 Query: 445 HLFYVLEQQIEREQFPQEQAERYLEFLKGYLIPKYAEFIGKEIQTAYLESYSEYGQNIFD 504 H VLE +I+ P+ ++Y+EFL+ Y+ Y + + +++ T ++ SY+E Q IFD Sbjct: 403 HFMAVLENEIKDMILPENVKKQYIEFLEVYVKKDYQKSLEEDVXTNFIYSYTEQAQAIFD 462 Query: 505 RYVTYADFWIQDQEYRDPDTGQLFDRESLNAELEKIEKPAGISNPKDFRNEIVNFVLRAR 564 RYV A + E + E E+E ++ S K FR ++ +V Sbjct: 463 RYVDXA---VASDEIDET-------AEEFMTEIE-MQLNISASAAKGFRQDVAAYV--RT 509 Query: 565 ANNSGRNPNWTSYEKLRTVIEKKMFSNTEELLPVISFNAKTSTDEQKKHDDFVDRMMEKG 624 N G +T Y L+ IE K+ ++ ++L V++ + +++K+DD + +++E G Sbjct: 510 QANLGNLIEYTCYPPLKKAIETKLVTSLKQLTRVVTAENSNAGSDRQKYDDMIAKLIEAG 569 Query: 625 YTRKQVRLLCEW 636 Y + ++ Sbjct: 570 YCSTCAKDTLDY 581 >UniRef50_P39134 Protein prkA n=98 Tax=Bacteria RepID=PRKA_BACSU Length = 631 Score = 603 bits (1554), Expect = e-171, Method: Composition-based stats. Identities = 196/647 (30%), Positives = 333/647 (51%), Gaps = 45/647 (6%) Query: 5 DHYRQRYEAAKDEEFTLQEFLTTCRQDRSAYANAAERLLMAIGEPVMVDTAQEPRLSRLF 64 + YR+ E E T ++L +++ +A R+ I + + + Sbjct: 8 EKYREE-EQRLKWEGTFADYLEIIKENPMVAQSAHSRVFNMIKDSGIEEIDGR------- 59 Query: 65 SNRVIARYPAFE-EFYGMEDAIEQIVS-YLKHAAQGLEEKKQILYLLGPVGGGKSSLAER 122 +Y F+ E +G+E+++E++V Y AA+ L+ +K+IL L+GPV GGKS+L Sbjct: 60 -----KKYSFFDRELFGLEESLERLVEEYFHPAAKRLDVRKRILLLMGPVSGGKSTLVTM 114 Query: 123 LKSLMQLVPIYVLSANG-----ERSPVNDHPFCLFNPQEDAQILEKEYGIPRRYLGTIMS 177 LK ++ Y L+ NG + P+++ P L P +EYGI + +S Sbjct: 115 LKKGLE---AYTLTDNGAVYAIKGCPMHEDPLHLI-PHHLRDDFYREYGIR---IEGSLS 167 Query: 178 PWAAKRLHE-FGGDITKFRVVKVWPSILQQIAIAKTEPGDENNQDISALVGKVDIRKLEH 236 P RL E +GG I +V +++ S ++ I P D +QDI+ L G +D + Sbjct: 168 PLNVMRLEEEYGGRIEDVKVERIFFSEDKRTGIGTFSPSDPKSQDIADLTGSIDFSTIAE 227 Query: 237 YA-QNDPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPF 295 Y ++DP AY + G L +AN+G+MEF EM K K L LL+ TQEGN+ + + Sbjct: 228 YGSESDPRAYRFDGELNKANRGMMEFQEMLKCDEKFLWHLLSLTQEGNFKA-GRFALISA 286 Query: 296 NGIILAHSNESEWVTFRNNKNNEAFLDRVYIVKVPYCLRISEEIKIYEKLLNHSELTHAP 355 + +I+AH+NE+E+ +F +NK NEA R+ ++ VPY L++SEE +IYEK++ S++ Sbjct: 287 DELIVAHTNETEYRSFISNKKNEALHSRIIVMPVPYNLKVSEEERIYEKMIAESDVADVH 346 Query: 356 CAPGTLETLSRFSILSRLKEPENS--SIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVD 413 AP TL+ + FSIL+RLKEP+ S + KMR+YDGES + E D Sbjct: 347 IAPHTLKVAAMFSILTRLKEPKRSDIDLVKKMRLYDGES---VEGYNSVDVEDMKKEYND 403 Query: 414 EGMNGLSTRFAFKILSRVFNFDHVEVAANPVHLFYVLEQQIERE-QFPQEQAERYLEFLK 472 EGM+G+ R+ +S ++E + N + + L++ +++ E ERYL F+ Sbjct: 404 EGMSGIDPRYVINRISSTIIRKNME-SINSLDVLRSLKEGLDQHPSISSEDRERYLNFIS 462 Query: 473 GYLIPKYAEFIGKEIQTAYLESYSEYGQNIFDRYVTYADFWIQDQEYRDPDTGQLFDRES 532 +Y + KE+Q A++ SY E + + D Y+ + + + RDP TG+ + Sbjct: 463 AA-RKEYDDIAKKEVQKAFVYSYEESAKTLMDNYLDNVEAYCNKNKLRDPLTGEEMN--P 519 Query: 533 LNAELEKIEKPAGISN--PKDFRNEIVNFVLRARANNSGRNPNWTSYEKLRTVIEKKMFS 590 + IE+ GIS K FR EI+ + G+ ++ S+E+LR I+KK+F+ Sbjct: 520 DEKLMRSIEEQIGISENAKKAFREEILIRISAYA--RKGKRFDYNSHERLREAIQKKLFA 577 Query: 591 NTEELLPVISFNAKTSTDEQKKHDDFVDRMM-EKGYTRKQVRLLCEW 636 + ++++ + + + KK ++ V R++ E GY L ++ Sbjct: 578 DLKDVVKITTSTKTPDEQQLKKVNEVVARLIDEHGYNSTSANELLKY 624 >UniRef50_A4BNQ6 PrkA protein n=2 Tax=cellular organisms RepID=A4BNQ6_9GAMM Length = 652 Score = 547 bits (1408), Expect = e-154, Method: Composition-based stats. Identities = 173/644 (26%), Positives = 297/644 (46%), Gaps = 40/644 (6%) Query: 10 RYEAAKDEEFTLQEFLTTC--RQDRSAYANAAERLLMAIGEPVMVDTAQEPRLSRLFSNR 67 R AK + T EFL RQ + + + M+ Q + + Sbjct: 24 REHRAKHWQGTFTEFLDQIVARQPALVTRTSHQYIW------DMLRWMQRKETNEPEESE 77 Query: 68 VIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 E +GME+A+ +I Y K A G E +++L LLGP GGKSSL LK + Sbjct: 78 NNGVQLFSHELFGMENALRRITDYFKAANAGSEVGRRLLLLLGPPSGGKSSLVILLKRGL 137 Query: 128 QLV------PIYVLSANGERSPVNDHPFCLFNPQEDAQILEKEYGIPRRYLGTIMSPWAA 181 + +Y L SP++++P L P + Y + + +SP+ Sbjct: 138 EEYSHTDEGALYALKG----SPLHENPLNLV-PYTLRSEFRETYAVD---IHGELSPFCR 189 Query: 182 KRL-HEFGGDITKFRVVKVWPSILQQIAIAKTEPGDENNQDISALVGKVDIRKLEHYA-Q 239 L HEF G+ + V +++ S ++ + P D DI+ L+G VD+ K+ Y + Sbjct: 190 AILEHEFDGNFMDYPVERIFLSESNRVGVGTYAPHDPTTADIADLIGSVDLSKVSEYGDE 249 Query: 240 NDPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGII 299 DP A+ +SGA+ A++G++E +E+ K + L+ LLT TQE N + + I Sbjct: 250 GDPRAWSWSGAVYAASRGLLEMIEILKVKREFLYLLLTLTQEKNVK-VSRFPLIHVDETI 308 Query: 300 LAHSNESEWVTFRNNKNNEAFLDRVYIVKVPYCLRISEEIKIYEKLLNHS-ELTHAPCAP 358 LAH+N +E+ F K NEA LDR+ IV+VPY L +E +IY KL+ + P Sbjct: 309 LAHTNLAEFRKFLQEKENEALLDRMVIVQVPYTLHYRDEARIYRKLIAQAPTFREIHLDP 368 Query: 359 GTLETLSRFSILSRLKEPENSSI--YSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGM 416 LE + F++LSRLK E + K+R+Y GE D + + + + + DEG+ Sbjct: 369 HALEVAAVFAVLSRLKPSEREDLDFSKKVRLYAGE---DVEGYSSTEVDRIRHEFEDEGL 425 Query: 417 NGLSTRFAFKILSRVFNFDHVEVAANPVHLFYVLEQQIEREQ-FPQEQAERYLEFLKGYL 475 G+S RF LS + V + + L L+ IE + +Q +++FL Sbjct: 426 AGVSPRFVVNALSNAISRSEVR-SLTSMELLVTLKDSIEHDARIDPKQKRSWVDFLVTAR 484 Query: 476 IPKYAEFIGKEIQTAYLESYSEYGQNIFDRYVTYADFWIQDQEYRDPDTGQLFDRESLNA 535 Y ++ +++ A S+ E +N+ ++Y+ + + ++E DP T + R+ Sbjct: 485 KDFYNHWVKEDVHKALFVSFEEESENLLEKYLDEVEATLDNREVVDPITAE--SRQPDER 542 Query: 536 ELEKIEKPAGISNP--KDFRNEIVNFVLRARANNSGRNPNWTSYEKLRTVIEKKMFSNTE 593 L +E+ IS+ FR E+V + A G S+ +L+ +EK +F Sbjct: 543 FLRAVEEKINISDAGKHTFRQEVVRKAM--VAYKRGEKFTLDSHARLKEAMEKYLFEERR 600 Query: 594 ELLPVISFNAKTSTDEQKKHDDFVDRMM-EKGYTRKQVRLLCEW 636 ++L +++ A+ + ++K +R++ + GY R R + Sbjct: 601 DVLRLVTSVARPDEEAREKIAAVEERLINDYGYDRHSAREALNY 644 >UniRef50_A0MN77 Serine kinase n=1 Tax=Thermus phage phiYS40 RepID=A0MN77_9CAUD Length = 619 Score = 537 bits (1384), Expect = e-151, Method: Composition-based stats. Identities = 167/643 (25%), Positives = 295/643 (45%), Gaps = 60/643 (9%) Query: 12 EAAKDEEFTLQEFLT--TCRQDRSAYANAAERLLMAIGEPVMVDTAQEPRLSRLFSNRVI 69 + A+ + + +EFL R +A + L AI +E ++ ++F+ Sbjct: 10 KTAESRKLSFKEFLEEKFVRNPAKYSRSAHKYLFDAI---TYFGFDEERKIPKIFA---- 62 Query: 70 ARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMQL 129 +E +G++D I + ++ L+ A G + +++I+ +GPVG KS+ +K ++ Sbjct: 63 ------DELFGVDDKIREFMTILEAGANGHDVRRRIILFVGPVGTAKSTFVSIIKKALER 116 Query: 130 VPIYVLSANGER-----SPVNDHPFCLFNPQEDAQILEKEYGIPRRYLGTIMSPWAAKRL 184 Y + GE P+++ P L P++ KE+G+ + + P +L Sbjct: 117 ---YSKTEEGEIYAIEFCPIHEDPLNLI-PEDTRDDFYKEFGVK---IDQELCPVCRHKL 169 Query: 185 HEFG-GDITKFRVVKVWPSILQQIAIAKTEPGDENNQDISALVGKVDIRKLEHYAQ-NDP 242 E D++ VV+ S ++ IA P D +QD+S LVG + R ++ + P Sbjct: 170 KELKYEDVSTVPVVRFTFSEAERRGIATFVPADWTSQDVSVLVGSENFRAVQELGDPSHP 229 Query: 243 DAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAH 302 + ++G+L AN+GI EF+E+ KA +L PL+T QE + + + +++AH Sbjct: 230 LGWNFNGSLFVANRGIHEFIELHKAKPDLLFPLITVAQERKVK-VDRFGLIDVDEVLIAH 288 Query: 303 SNESEWVTFRNNKNNEAFLDRVYIVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLE 362 +N +E+ F N K NEA DR + Y LR +E KIY+K+L + AP TL+ Sbjct: 289 TNYAEYNKFVNKKENEALKDRTREINWIYNLRWDDEEKIYKKMLGETT---YHLAPWTLK 345 Query: 363 TLSRFSILSRLKEPENS---SIYSKMRVYDGESLKDTDPKAKSYQEYR--DYAGVDEGMN 417 +S +I+SRL P+ + + +++Y+G Y EY + D+G Sbjct: 346 FISGIAIMSRL-SPDRDKKYDLLTSLKLYNG-------DYGAMYSEYHVDEMKHPDDGKF 397 Query: 418 GLSTRFAFKILSRVFNFDHVEVAANPVHLFYVLEQQIEREQFPQEQAERYLEFLKGYLIP 477 G+S R A LS P+ + LE+ I+ E +L LK ++ Sbjct: 398 GISPRVAVDALSFASVG---NTCVTPIRAYEKLEEIIKSGNVDIPHKE-FLA-LKDMILT 452 Query: 478 KYAEFIGKEIQTAYL-ESYSEYGQNIFDRYVTYADFWIQDQEYRDPDTGQLFDRESLNAE 536 +Y +FI + A++ S++ Q DRY+ A +I ++ +DP TG E Sbjct: 453 EYNKFIKDAVFRAFIGSSFATEAQKYVDRYIENAQAFINGEKIKDPFTGNYV--EPDEKF 510 Query: 537 LEKIEKPAGISN--PKDFRNEIVNFVLRARANNSGRNPNWTSYEKLRTVIEKKMFSNTEE 594 L IE+ GIS KDFR +I+ V G+ + + L+ IE K+F + Sbjct: 511 LRSIEELVGISKEAAKDFRMKIL--VKATNLLRMGKKITYDIHPLLKEAIENKIFGDRAT 568 Query: 595 LLPVISFNAKTSTDEQKKH-DDFVDRMMEKGYTRKQVRLLCEW 636 + S + T+EQ+KH + V+ + + G+ R + Sbjct: 569 FIRG-SITSVVKTEEQEKHIQEAVEELKKVGFCEVCAREAISY 610 >UniRef50_Q18FZ9 Predicted serine protein kinase n=11 Tax=Halobacteriaceae RepID=Q18FZ9_HALWD Length = 689 Score = 526 bits (1355), Expect = e-148, Method: Composition-based stats. Identities = 172/680 (25%), Positives = 304/680 (44%), Gaps = 63/680 (9%) Query: 5 DHYRQRYEAAKDEEFTLQEFLTTCRQDRSAYANAAER---LLMAIGEPVMVDTAQEPRLS 61 Y+ + + +L D NA +R + G D + Sbjct: 13 SQYKDSVPSDLRDAKRFDWYLDELYNDPRIARNAHQRVADMFDHYGTEYDEDAG----VV 68 Query: 62 RLFSNRVIARYPAFEEFYGME--DAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKS-- 117 + FYG E ++I + V+ +K A+ L +K+I LLGPVG GKS Sbjct: 69 EYCMASEDPLHDGENTFYGREVHESIHEFVNKVKSGARRLGPEKRIKLLLGPVGSGKSHF 128 Query: 118 -------------SLAERL-----KSLMQLVPIYVLSANGERSPVNDHPFCLFNPQEDAQ 159 S A R+ K+LM ++P + + +SP+N P L PQE Sbjct: 129 DWMVRRYFEAYTASDAGRMYTFRWKNLMDVIPDQDPADDTVQSPMNQDPLVLL-PQEQRD 187 Query: 160 I----LEKEYGIPRRYL-GTIMSP----WAAKRLHEFGGDIT-----KFRVVKVWPSILQ 205 I L E P G + P + K L + D+ ++++ S + Sbjct: 188 IVLDRLNDELDAPYTIQNGQSLDPASEFYMDKLLAHYNDDLEAVLQNHVEIIRLVASENK 247 Query: 206 QIAIAKTEPGDENNQDISALVGKVDIRKLEHYAQNDPDAYGYSGALCRANQGIMEFVEMF 265 + + EP D+ NQD + L G V+ KL Y ++DP A+ YSGA C AN+G+ E+ Sbjct: 248 RQCVETFEPKDKKNQDETELTGDVNYSKLAVYGESDPRAFDYSGAFCNANRGLFSGEELL 307 Query: 266 KAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEWVTFRNNKNNEAFLDRVY 325 K + L+ L A+QE + + + +I+ +N E+ + ++ EAF DR Sbjct: 308 KLQREFLYDFLHASQEQTIK-PKNNPRIDIDEVIVGRTNMPEYREKKGDEKMEAFNDRTK 366 Query: 326 IVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSRFSILSRLKEPE-NSSIYSK 384 V PY L EE +IY K+L ++++ P LE F +L+RL EP+ N+S+ K Sbjct: 367 RVDFPYVLEYDEESEIYRKMLRNADVPDMHIEPHALEMAGLFGVLTRLAEPDTNASLVQK 426 Query: 385 MRVYDGESLKDTDPKAKSYQE-YRDYAGVDEGMNGLSTRFA-FKILSRVFNFDHVE-VAA 441 + Y+GE D + +E + + EGM+G+S RF +I + + H + Sbjct: 427 AKAYNGELDDGDDVDVRKLRENAEESTDIGEGMDGVSARFIGDEIAEAIMDATHRDRTYL 486 Query: 442 NPVHLFYVLEQQIERE-QFPQEQAERYLEFLKGYLIPKYAEFIGKEIQTAYLESYSEYGQ 500 +P+ +F E +E P+E ++Y +L + +Y E ++++ A E Q Sbjct: 487 SPLSVFSHFETNLENHGSIPEENLDQYHRYL-EMVREEYRERAIEDVRHALAYDLDE-IQ 544 Query: 501 NIFDRYVTYADFWIQDQEYRDPDTG--QLFDRESLNAELEKIEKPAGISNPKDFRNEIVN 558 ++Y+ + +I D D TG Q D L + EK++ P DFR E+ N Sbjct: 545 RQGEKYMDHVMAYIDDATVEDALTGREQDPDETFLRSVEEKLDIPED--RKDDFRQEVSN 602 Query: 559 FVLRARANNSGRNPNWTSYEKLRTVIEKKMFSNTEELLPVISFNAKTSTDE--QKKHDDF 616 +V R + +P+ ++LR +E+K++ + + I+F+A S +E + + + Sbjct: 603 WVSRRAREGTSFDPH--DNDRLRRALERKLWEDKKH---NINFSALVSANELDDDERNAW 657 Query: 617 VDRMMEKGYTRKQVRLLCEW 636 ++ ++++GY++ + + E+ Sbjct: 658 IEALVDRGYSQAGAQEVLEF 677 >UniRef50_Q08Z64 Serine protein kinase, putative n=5 Tax=Cystobacterineae RepID=Q08Z64_STIAU Length = 750 Score = 327 bits (837), Expect = 1e-87, Method: Composition-based stats. Identities = 125/737 (16%), Positives = 268/737 (36%), Gaps = 127/737 (17%) Query: 19 FTLQEFLTTCRQDRSA-YANAAERL---LMAIGEPVMVDTAQEPRLSRLFSNRVIARYPA 74 + +E+++ D A NAA+ L + G + R ++F+ I R Sbjct: 25 LSFEEYVSLFFNDPRAQARNAAQYLRDVMDHYGTEQVPHPTGTIRRFKVFNVPGIDRDGR 84 Query: 75 FEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMQLV---- 130 +++A+ +++ +++ L GP G KS+ LK+ M+ Sbjct: 85 VAGQEEVQNALYRLLGNF----VRTGRINKLILLHGPNGSAKSTFVNALKAGMEDYSNQP 140 Query: 131 --PIYVLSAN-------------GERSP-------------------------VNDHPFC 150 +Y L GER P + DHP Sbjct: 141 YGALYRLGWVFPSEKLIKGSIGFGERGPTPETDLTTTFAHLEAESIDVRMPCELRDHPLF 200 Query: 151 LFNPQEDAQILEK---------------EYGIPRRYLGTIMSPWAAK----RLHEFGGDI 191 + P E ++LE ++ + M + L+ + GD Sbjct: 201 VVPPVERRKMLEAALKKKGLGSGDGASGDFILSNYIRDGEMCHKCRRIFTALLNAYAGDY 260 Query: 192 T----KFRVVKVWPSILQQIAIAKTEPGDENNQDISALVGKVDIRKLEHYAQNDPDA-YG 246 ++ + + S Q EP + + + D +L + Sbjct: 261 LKVLRHVQIERFYVSRRYQEGTVTVEPQMSVDAIVQQITA--DRTQLNLPPALHGVVLFE 318 Query: 247 YSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNES 306 G L AN+G++E+ ++ K P++ LL ++ + L + +++A +NE Sbjct: 319 PHGPLVHANRGMIEYSDLLKRPLEAFKYLLGFSETSQVPLEPFV--LQLDEVLIASANEK 376 Query: 307 EWVTFRNNKNNEAFLDRVYIVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 F+ + +F R+ +V+VPY E +IY+ + + + AP E + Sbjct: 377 HLGAFKELPDFASFKGRIELVRVPYLRHYKLEQEIYDAQITSTSVGK-HVAPHATEVAAM 435 Query: 367 FSILSRLKEP-------------ENSSIYSKMRVY-DGE-----SLKDTDP----KAKSY 403 +++L+RLK+P ++ + KM +Y +G+ SL + + + Y Sbjct: 436 WAVLTRLKKPIPERYAADVKELVDHVTPLEKMHLYAEGKAPHRLSLANIKELKRLRTELY 495 Query: 404 QEYRDYAGVDEGMNGLSTRFAFKILSRVFNFDHVEVAANPVHLFYVLEQQIEREQFPQ-- 461 +E Y EG +G S R L N + + LE + + + Sbjct: 496 EESDTYPNY-EGRSGASAREIKTALFNA-AQSPDYKCLNALAVLEELEAICQDKSVYEFL 553 Query: 462 -----EQAERYLEFLKGYLIPKYAEFIGKEIQTAYLESYSEYGQNIFDRYVTYADFWIQD 516 + + EF++ + +Y + E++ + + + + +RY+ + W++ Sbjct: 554 QQEVVDHYHDHAEFVR-AVEGEYLNRVDSEVRDSMGLVSEDQYRELVERYLQHVSHWVRG 612 Query: 517 QEYRDPDTGQLF-DRESLNAELEKIEKPAGISNPKDFRNEIVNFVLRARANNSGRNPNW- 574 ++ R+ TG++ E AE+E I P G +P ++R +++ + R +N ++ Sbjct: 613 EKMRNRVTGEMDRPDEGRMAEMEAIIMPKG-EDPGEYRRGLISSIGAHRLDNPEAQMDYP 671 Query: 575 TSYEKLRTVIEKKMFSNTEELLP---------VISFNAKTSTDEQKKHDDFVDRMMEK-G 624 + + + F + +L + S EQ + + + M+++ G Sbjct: 672 RIFPDMFKRLRDHYFEERKRVLRKNKENILKYLSEERGALSQREQSQVESTLKTMVDRYG 731 Query: 625 YTRKQVRLLCEWYLRVR 641 Y + + ++ R Sbjct: 732 YCEHCAKDAILFLMKKR 748 >UniRef50_D0LUZ5 Putative serine protein kinase, PrkA n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LUZ5_HALO1 Length = 765 Score = 310 bits (795), Expect = 8e-83, Method: Composition-based stats. Identities = 90/516 (17%), Positives = 201/516 (38%), Gaps = 70/516 (13%) Query: 182 KRLHEFGGDIT----KFRVVKVWPSILQQIAIAKTEPGDENNQDISALVGKVDIRKLEHY 237 L + GD +V + + + EP + + + L Sbjct: 265 ALLANYQGDYLKVLRHVQVERFYIQHRYREGYVTVEPQLSVDASERQITADRSVAALPAA 324 Query: 238 AQNDPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNG 297 Q+ + Y G L AN+G++E+ ++ K P++ LLT ++ + + + + L + Sbjct: 325 LQSVSL-FEYGGELVGANRGLIEYSDLLKRPLEAYKYLLTTVEQASVSLSS--ATLFLDL 381 Query: 298 IILAHSNESEWVTFRNNKNNEAFLDRVYIVKVPYCLRISEEIKIYEKLLNHSELTHAPCA 357 + L SNE F+ +F R+ +V+VPY L ++E +IY++ L + A Sbjct: 382 VFLGTSNEIHLNAFKETAEFLSFRGRLELVRVPYLLDFTQEEQIYQQKLEEAA-GRRHVA 440 Query: 358 PGTLETLSRFSILSRLKEP-------------------ENSSIYSKMRVYDG-------E 391 P + +++L+R+++P E + +Y+ +V DG E Sbjct: 441 PHCAHVAALWAVLTRMRKPQAERYPAQLSEMIGRLTPLEKAELYASGQVPDGLDGRRAKE 500 Query: 392 SLKDTDPKAKSYQEYRDYAGVDEGMNGLSTRFA------------FKILSRVFNFDHVEV 439 + D + Y Y EG +G S R ++ +S + D +E Sbjct: 501 LRRAIDDIWRESDPYPFY----EGRSGASPREMQVVLFNAANSPNYRYVSPLAILDEIEE 556 Query: 440 AANPVHLFYVLEQQIEREQFPQEQAERYLEFLKGYLIPKYAEFIGKEIQTAYLESYSEYG 499 ++ L+Q ++ + R++E ++ L+ E I E+++A Sbjct: 557 LIKQASVYDFLKQDVQPGGY--HDHVRFIEVVRERLV----ERIDDEVRSALGLIEEREY 610 Query: 500 QNIFDRYVTYADFWIQDQEYRDPDTGQLFDRESLNAELEKIEKPAGI-SNPKDFRNEIVN 558 + +F+RY+ + W + + +P TG E+ A + ++E + +DFR ++++ Sbjct: 611 ERLFERYIVHVLHWTKKERVLNPSTGAY--EEADAALMREVESTLALEGEAEDFRRDLIS 668 Query: 559 FVLRARANNSGRNPNWT-SYEKLRTVIEKKMFSNTEELLP---------VISFNAKTSTD 608 + ++ P++T + + ++ + ++++ + + A + Sbjct: 669 KIGAWSLDHPNEKPDYTQIFAEHFKRLKADYYEQRKKIVRRGVSDLLTLLTAEGAGLDPE 728 Query: 609 EQKKHDDFVDRMMEK-GYTRKQVRLLCEWYLRVRKS 643 ++ + + E+ Y R R R S Sbjct: 729 ALERAKRAREALCERFDYQHDSARDALTLLHRYRYS 764 Score = 55.5 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 36/116 (31%), Gaps = 8/116 (6%) Query: 19 FTLQEFLTTCRQDRSAY-ANAAERLLMAI---GEPVMVDTAQEPRLSRLFSNRVIARYPA 74 + E+L + +A + L G + R RLF Sbjct: 30 MSFAEYLDVVAAAPRTHLRSAPQYALDCFDHFGTDTVSSPRGTRRRFRLFD---CPWAEG 86 Query: 75 FEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMQLV 130 + G ED +I L +++ L GP G KS++ + MQ Sbjct: 87 RDRLVGQEDTQNRIYRAL-ANFVREGTANKLILLHGPNGSAKSTIIRCIGRAMQHY 141 >UniRef50_A9GWJ6 Protein kinase n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GWJ6_SORC5 Length = 800 Score = 302 bits (772), Expect = 4e-80, Method: Composition-based stats. Identities = 120/749 (16%), Positives = 254/749 (33%), Gaps = 135/749 (18%) Query: 19 FTLQEFLTTCRQDR-SAYANAAER---LLMAIGEPVMVDTAQEPRLSRLF---------- 64 + Q++L + +AA + G + E +LF Sbjct: 55 LSFQQYLELFASNPVRFGRDAARYVRDMFDHFGTRTVKKPWGELTRFQLFDLPWELPATE 114 Query: 65 ----SNRVIARYPAFE-EFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSL 119 A Y + G E+ ++ L + + +++ + GP G KS+L Sbjct: 115 PAQQGAPAAASYHGRDFALIGHEELQAEVYRVLCNFVRE-GRANRLVLMHGPNGSAKSTL 173 Query: 120 AERLKSLMQLVPI--------------------------------------YVLSANGER 141 A + ++ Y + + Sbjct: 174 AACILRALEHYSTLDEGAVYRFHWVFPSRKTMRGSIGFGGDVKASAADGTSYAHLEDDQI 233 Query: 142 SP-----VNDHPFCLFNPQEDAQI---LEKEYGI----PRRYLGTIMSPWAAKRLHEF-- 187 + DHP L +E + L ++ G P + +S + Sbjct: 234 DARLVIELRDHPLFLLPVRERRALILRLYEDAGATEPPPEWLMSGKLSHKNQQVFEALLV 293 Query: 188 --GGDIT----KFRVVKVWPSILQQIAIAKTEPGDENNQDISALVGKVDIRKLEHYAQND 241 GG + +V + + S ++ P + + + L Q Sbjct: 294 ASGGSLVETLRHVQVERYFISRRYRVGAVTIGPELSVDAGERQITADRSLASLPTSLQAT 353 Query: 242 PDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILA 301 + G L A G++EF ++ K P+ L + G + + + N +++ Sbjct: 354 TL-FEAHGELIEAAGGVLEFSDLLKRPLDAFRYLQLTLETGEVSLPQQ--TVQTNVVMIG 410 Query: 302 HSNESEWVTFRNNKNNEAFLDRVYIVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTL 361 +N+ FR + +F R +++ PY +E IY+ + AP Sbjct: 411 SANDVHLNAFREHPEFPSFRGRFELLRAPYLRSYPDEQAIYDTQIVPFVTR--HVAPHAT 468 Query: 362 ETLSRFSILSRLKEPE-------------NSSIYSKMRV---------YDGESLKDTDPK 399 ++F++L+R+++PE + + KM + +D E+ K Sbjct: 469 RVAAQFAVLTRMRQPEAKRYPDALAPLVSSLTAVEKMELFATGTAPERFDAEAQKVLRAG 528 Query: 400 AKSYQEYRDYAGVDEGMNGLSTRFA-FKILSRVFNFDHVEVAANPV--HLFYVLEQQIER 456 ++ D + EG G+S R +L + DH ++ V L + ++Q E Sbjct: 529 IEAIYHESDASVDFEGRLGVSPREVRTLLLDAAQSEDHACLSPFAVLSELDALCKRQAEY 588 Query: 457 EQFPQEQ-AERYLE--FLKGYLIPKYAEFIGKEIQTAY-LESYSEYGQNIFDRYVTYADF 512 + ++Q A Y + + + + + +E++TA L + Y + +FDRYV++ Sbjct: 589 DWLKEKQLAGGYHDHRLFREVVRTRLLDTTEEEMRTASGLVDETRYAE-LFDRYVSHVGV 647 Query: 513 WIQDQEYRDPDTGQLFDRESLNAELEKIEKPAGISNP-KDFRNEIVNFVLRARANNSGRN 571 W++ ++ R+P TG + ++E G+ D R +++ + ++ G+ Sbjct: 648 WVKGEKIRNPHTGDF--ENPDERMMREVEALLGVRTKHDDHRRGLISAIAAWAIDHPGQK 705 Query: 572 PNW-----TSYEKLRTVI--EKK-----MFSNTEELLPVISFNAKTS-------TDEQKK 612 KLR + E++ + + LL + K+ +E++ Sbjct: 706 IVNAVVFPQQIRKLREAVFTERRKGVALLVRDLVALLRDAQSDGKSEKGWGELREEERRN 765 Query: 613 HDDFVDRMMEKGYTRKQVRLLCEWYLRVR 641 ++R+ GY + LR R Sbjct: 766 ATRALERLRGMGYCDRCALDAASALLRAR 794 >UniRef50_A8TM27 Putative Ser protein kinase n=1 Tax=alpha proteobacterium BAL199 RepID=A8TM27_9PROT Length = 318 Score = 272 bits (695), Expect = 4e-71, Method: Composition-based stats. Identities = 110/200 (55%), Positives = 146/200 (73%) Query: 2 NIFDHYRQRYEAAKDEEFTLQEFLTTCRQDRSAYANAAERLLMAIGEPVMVDTAQEPRLS 61 ++F Y + Y+ K+ E +L E+L C D A+A+AAER++ AIG+P +VDT+++ RL Sbjct: 6 DVFSEYTETYQTRKESEMSLMEYLELCGSDPMAFASAAERMVAAIGDPEVVDTSRDARLG 65 Query: 62 RLFSNRVIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAE 121 R+F NR I YPAF +F+GMED +E++V Y ++AAQGLEE+KQ+LYLLGPVGGGKSSLAE Sbjct: 66 RIFMNRTIKIYPAFHDFFGMEDTVERLVGYFRYAAQGLEERKQVLYLLGPVGGGKSSLAE 125 Query: 122 RLKSLMQLVPIYVLSANGERSPVNDHPFCLFNPQEDAQILEKEYGIPRRYLGTIMSPWAA 181 RLK+LM+ PIYVL A + SPV + P LF+PQ Q L+ +GIP R L ++SPWA Sbjct: 126 RLKTLMEQHPIYVLKAGDQISPVFESPLGLFDPQRMGQKLQDRFGIPLRKLNGLISPWAV 185 Query: 182 KRLHEFGGDITKFRVVKVWP 201 KRL EF GD+TKF V KV Sbjct: 186 KRLDEFDGDLTKFTVAKVRF 205 >UniRef50_A6G891 Putative serine protein kinase, PrkA n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G891_9DELT Length = 780 Score = 268 bits (685), Expect = 4e-70, Method: Composition-based stats. Identities = 117/671 (17%), Positives = 223/671 (33%), Gaps = 126/671 (18%) Query: 19 FTLQEFLTTCRQDRSA-YANAAERL---LMAIGEPVMVDTAQEPRLSRLFSNRVIARYPA 74 + +E+ N+A+ + L + G + RLF + Sbjct: 32 LSFEEWFELLVDRPRIHARNSAQYVRDALESFGRDEVRTPRGLTTRFRLFD----RSFDD 87 Query: 75 FEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMQ------ 128 G E A ++ L + L ++ L GP G KS+L + L++ ++ Sbjct: 88 SPRLVGQERAQNELFEVLDGYCR-LGRTDSLILLHGPNGSAKSTLLDCLQAGLEAYSHTD 146 Query: 129 LVPIYVLSA-----------NGERSP--------------------------VNDHPFCL 151 +Y + G +P DHP L Sbjct: 147 EGALYRFAWVFPSGQQLSAGIGFGAPGSRELLGDESYARLDTGSIESRLTDENKDHPIYL 206 Query: 152 FNPQEDAQILEKEYG------------IPRRYLGTIMSPWAAK----RLHEFGGD----I 191 + ++LE+ +G + + +S K L+ + GD Sbjct: 207 IPHEPRLRLLEELFGAEVDGQSEDGFVVAHQIRNGDLSARNRKIFDALLNGYQGDLGKVY 266 Query: 192 TKFRVVKVWPSILQQIAIAKTEPGDENNQDISALVGKVDIRKLEHYAQNDPDAYGYSGAL 251 +V +++ S + + EP + + G L +G G L Sbjct: 267 QHIQVERLYLSRTYRRGLVDVEPKQTVDARSFPVTGDRAFASLPPSVSGQVL-HGTQGDL 325 Query: 252 CRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEWVTF 311 A +G++ F ++ K P + LLTAT+ G L + + +N+ + + F Sbjct: 326 VDAQRGVLNFSDLLKRPYEHYKYLLTATESGRVVLDHL--LLGLDVVFTGSANDIKLLEF 383 Query: 312 RNNKNNE--AFLDRVYIVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSRFSI 369 R ++ E +F R+ ++ VPY E KIY++ + L AP L+ + + Sbjct: 384 RALRSAEYQSFRARLNLISVPYLRDYRVERKIYQEQVG-DLLRGVHIAPHVPRILALWGV 442 Query: 370 LSRLKEPENSSIYSKM-------------------RVYDGESLKDTDPKA----KSYQEY 406 ++RL+ P++ K+ RV +G S + + Y E Sbjct: 443 MTRLRPPDSEKYPKKISAALDKLTPLAKADLYAYGRVPEGLSSDEAKELLAAVPEMYAER 502 Query: 407 RDYAGVD-----------EGMNGLSTRFAFK-ILSRVFNFDHVEVAANPVHLFYVLE--- 451 +A V EG G S R +L+ N + +F L Sbjct: 503 FAHAVVRVEGSDTPLGDYEGSFGASVRDLKNVLLAAASNLPPESHSVTVPRVFDELRDFL 562 Query: 452 -QQIEREQFPQEQAERYLEF-----LKGYLIPKYAEFIGKEIQTAY-LESYSEYGQNIFD 504 Q+ E + + ++ + E++ A L Y + +F Sbjct: 563 ADQVNHRWMHLEAKGGFHLLTGEGSITERAFSRWLDLSDWEVREALGLVDEERYLE-LFR 621 Query: 505 RYVTYADFWIQDQEYRDPDTGQLFDRESLNAELEKIEKPAGISNPKDFRNEIVNFVLRAR 564 +YV +A ++ + D TGQL D + ++EK + FR +I+ + Sbjct: 622 KYVIHASHHVKGERIFDEVTGQLTD--PDEKFMRELEKSMDPNAGPGFREDILARIGAWA 679 Query: 565 ANNSGRNPNWT 575 ++ P + Sbjct: 680 LSHPNEGPIYE 690 >UniRef50_C0QJY5 PrkA2 n=11 Tax=Deltaproteobacteria RepID=C0QJY5_DESAH Length = 687 Score = 164 bits (416), Expect = 7e-39, Method: Composition-based stats. Identities = 121/690 (17%), Positives = 242/690 (35%), Gaps = 82/690 (11%) Query: 16 DEEFTLQEFLTTCRQDRSAYANAAE---RLLMAIGEPVMVDTAQEPRLSRLFSNRVIARY 72 ++ +L + + + + +A + R+++ G + + +F + Sbjct: 5 KDQKSLMFHIDALKTGKRIFEDAFQGVTRMILESGVEKVSVKGKTTYHFDIF-------H 57 Query: 73 PAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAE----------- 121 + GM D I VS++K A++G ++ L+G G GK+ + Sbjct: 58 KGKKHLIGMYDEINSFVSFVKDASEGGSSREMAFVLVGEPGNGKTFFVDYLCDQYRLFLS 117 Query: 122 ---------RLKSLMQL---VPIYVLSANGERSPV----------NDHPFCLFNPQEDAQ 159 R K+L +L I + + P+ ++ L + Sbjct: 118 RPENRKYTFRFKNLDKLNGYGRITTIESQTYEDPMILAMGLCETMDETKTYLAKTVRLSD 177 Query: 160 ILEKEYGIPRRYLGTIMSPWAAKRLHEF-GGDITK----FRVVKVWPSILQQIAIAKTEP 214 R LG S + ++ E+ D+ + +V V + K Sbjct: 178 HEIDTLFAKYRPLGA-CSSYIWSQIREYADADMEEMLSFIDIVPVPMTESLGTITGKYPA 236 Query: 215 GDENNQDISALVGKVDIRKLEHYAQ-NDPDAYGYS-GALCRANQGIMEFV-EMFKAPIKV 271 D+ L+G+ I++L H N+P + GAL R G + F E++K + Sbjct: 237 KDKITSSAVDLLGEESIQRLLHITDTNNPYRFDLRRGALARVAGGGIHFSDEIYKNKKDL 296 Query: 272 LHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEWVTFRNNKNNEAFLDRVYIVKVPY 331 + L Q P + +I+A SN SE+ +F + +DR I V + Sbjct: 297 VQVYLGVIQNRTIEIDGY--KWPIDTLIVATSNNSEFDSFLAEREEAPIVDRCRICYVAH 354 Query: 332 CLRISEEIKIYEKLLNHSELT-----HAPCAPGTLETLSRFSILSRLKEPENSSIYSKMR 386 + ++ + T P S +L+RL + E + M+ Sbjct: 355 NTDYKLQQELTRYAIGSDVKTTLNSDKLHQDPNLNYAASVGVVLTRLPKSEKLTPVETMK 414 Query: 387 VYDGES--LKDTDPKAKSYQEYRDYAGVDE--GMNGLSTRFAFKILSRVFNFDHVEV--A 440 + GE K A+ + + G GL R + + + Sbjct: 415 LAAGEVAGEKSLKTLAELIDTLNQGTDITKRFGQKGLGQRNLGRSIQLLLESSETNEGNC 474 Query: 441 ANPVHLFYVLEQQIEREQFPQEQAERYLEFLKGYLIPKYAEFIGKEIQTAYLESYSEYGQ 500 + +F LE+ + ++++ LK Y E I E+ AY+ + Sbjct: 475 MFALDIFNTLERVVLDYVTDPSDRTKFMDDLK-IGRGLYRERIMTEMFNAYM-DEPLAIK 532 Query: 501 NIFDRYVTYADFWIQDQ--------EYRDPDTGQLFDRESLNAELEKIEKPAGISNPKDF 552 Y+ + + +Y+DP TG+L + ++ +E+ G+ + Sbjct: 533 KDVMNYI-NMIIGVDAEHLGPDLMWKYKDPQTGELKAMKIDERYIKNVEERLGLKTEEQ- 590 Query: 553 RNEIVNFVLRARANNSGRNPNWT--SYEKLRTVI-EKKMFSNTEELLPVI-SFNAKTSTD 608 R N + + +PN+ +L I + ++ S+ ++ + +T+ + Sbjct: 591 RASFRNSIRKIYGQKISIDPNYDFMDNLELVKAITDVRLKSDIAGAGSLVGALANRTNEE 650 Query: 609 EQKKHDDFVDRMMEK-GYTRKQVRLLCEWY 637 QK HD ++ MMEK GY R E++ Sbjct: 651 NQKLHDRMINTMMEKLGYCRTCSTKTIEYF 680 >UniRef50_Q3IPY4 Predicted serine protein kinase 2 n=11 Tax=Halobacteriaceae RepID=Q3IPY4_NATPD Length = 758 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 117/746 (15%), Positives = 240/746 (32%), Gaps = 131/746 (17%) Query: 5 DHYRQRYEAAKDEEFTLQEFLTTCRQDRSAYANAAERLLMAI---GEPVMVDTAQEPRLS 61 D R YE +L E++ T ++ ++ A+A++ LL AI G +++ +E + Sbjct: 12 DALRDTYEP----PMSLTEYVETVFENPTSAAHASKYLLKAIEAAGTRTVIEEGEEKQRY 67 Query: 62 RLFSNRVIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAE 121 R F + G + V L+ A ++++IL+L GP GKS L Sbjct: 68 RFFDD---PYNDGEHAVLGNTAVLNAFVDDLRSIAARRGKEEKILWLDGPTATGKSELKR 124 Query: 122 RLKSLM------QLVPIYVLSAN----------------------GERSPVNDHPFCLFN 153 L + + Y + N SPV HP +F Sbjct: 125 CLINGLREFSKTDNGRRYTVEWNVSATDATPGLTYGDDSSPDEDEWYPSPVQAHPLSVFP 184 Query: 154 PQEDAQILEKEYGIPRRYL----GTIMSPWAAKRLHEFGGDITKFRVVKVWPSILQQ--- 206 + Q++ ++ + P++ + + V ++ ++ + Sbjct: 185 ERVREQLIADLNDSRTDHIPIALDAELDPFSREAYDHLEERYRREGVEDLFSAVTDEKHL 244 Query: 207 ----------IAIAKTEPGDENNQDISALVGKV---DIRKLEHYAQNDPDAYGYSGALCR 253 I D + LVG +++L+ + +P A+ Y G L + Sbjct: 245 RVKNFVVDVGQGIGVLHSEDAGSPKER-LVGSWMAGMLQRLDSRGRKNPQAFSYDGVLSQ 303 Query: 254 ANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSN---ESEWVT 310 N G++ VE +L LL E + + + ++ SN E++ Sbjct: 304 GN-GLLTIVEDAAQHADLLQKLLNVPDERRVKLDKAVGM-DIDTQMVVISNPDLEAQLNK 361 Query: 311 ---FRNNKNNEAFLDRVYIVKVPYCLRISEEIKIYEKLL--------------------- 346 +A R+ + Y +S E ++ + L Sbjct: 362 HAEMEGTDPLKALKRRLDKHEFQYLTNLSLEAELLRRELTNETERWTAESYDELESRIRE 421 Query: 347 --------NHSELTHAPCAPGTLETLSRFSILSRLKE---PENSSIYSKMRVYDGESLKD 395 + AP +E + +++ SRL P + K VYD L+D Sbjct: 422 PVTLSVRDAEGTVKDRELAPHAVEAAALYAVASRLDAESLPPGIDLVDKALVYDKGYLQD 481 Query: 396 TDPKAKSYQEYRDYAGVDEGMNGLSTRFAFKILSRVFNFD--------HVEVAANPVHLF 447 D + Y+E D+ EG G+ + I++ + + VE P + Sbjct: 482 GDE--RRYREEFDFGDATEGKTGIPVTYTRDIVADLLHETPDRHHPDLDVETIVMPRDVL 539 Query: 448 YVLEQQIEREQFPQEQAERYLEFLKGYLIPKYAEFIGKEIQTAYLESYSEYGQNIFDRYV 507 + + ++ E + ++ A + + ++ + Y+ Sbjct: 540 NTMAEGLDDAPVFSSAERTEYENRLVPVKNHIFGRQESDVIDA-IMREKQVDESTVEEYI 598 Query: 508 TYADFWIQDQEYR---------DPDTGQLFDRESLNAELE-KIEKPAGISNPKDFRNE-I 556 + W++D+ DP ++F+ E L E + + + FR E I Sbjct: 599 EHVYAWVEDETIENDRGESVPPDPLKMKVFETEHLGRFDEDDYDGTEPEAAVETFRAEKI 658 Query: 557 VNFVLRARANNSGRNP-----NWTSYEKLRTVIEKKMFSNTEELLPVISFNAKTSTDEQK 611 + + R N + + TV+ + + + + Sbjct: 659 ITALNRHAWRNRDAEFRVSDVDPRDIPVIETVLGRHDWDDVRRTYGDLDPAQWDDPPSGT 718 Query: 612 KHDDFVDRMME-----KGYTRKQVRL 632 + + +R + GY+ L Sbjct: 719 ETERVKERALTNMQELFGYSPAAAEL 744 >UniRef50_C0QJY2 Sensory box histidine kinase/response regulator protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QJY2_DESAH Length = 775 Score = 95.6 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 123/764 (16%), Positives = 231/764 (30%), Gaps = 162/764 (21%) Query: 10 RYEAAKDEEFTLQEFLTTCRQDR-SAYANAAERLLMAIGEPVMVDTAQEPR--------- 59 R+E K T +FL + N + + V V + P Sbjct: 30 RHEKRK--PLTFIQFLDLIEKQPARVIRNIFQVFYDMMFSHVKVANSDVPDDSGEVNFTY 87 Query: 60 --LSRLFSNRVIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKS 117 S+LF Y + + + + + + L+H AQ + +I GP G GKS Sbjct: 88 YDCSKLFVEGSENPY-FADRLFA--NRMMKHMEGLRHGAQ----QNRIYIFHGPHGCGKS 140 Query: 118 SL------------------------------------------AERLKSLMQLV--PIY 133 + +RL +++ + Sbjct: 141 TFLNNLLKRFESYANTEEGMRYEALWRIDVNRLGQPGMTERTSSIDRLVHILERHYPDLI 200 Query: 134 VLSANGER------------SPVNDHPFCLFNPQEDA----------QIL------EKEY 165 + E +D+P L P+ EKEY Sbjct: 201 DQTVEDELNHGVDKACLEIPCISHDNPL-LIIPKHLRRGMLDKLIRNDEFKWRLFTEKEY 259 Query: 166 GIPRRYLGTIMSPWAAKRLHEFGGDITKF----RVVKVWPSILQQIAIAKTEPGDENNQD 221 + + L E G I + + S I+ PGD+ ++ Sbjct: 260 EWVFSQEACTVCSSIYQALFERLGSIEEVFNMLYARPYFFSRRMGKGISVFNPGDKPLKN 319 Query: 222 ISALVGKVDIRKLEHYAQNDPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQE 281 + R + ++ Y YS + N G+ +++ ++ + L E Sbjct: 320 NVITNPMLQTRINNLFRDSNLIHYVYS-RFAKTNNGVYALMDIKSHNVERMVELHNIISE 378 Query: 282 GNYNGTEGISALPFNGIILAHSNESEWVTFRNNKNNEAFLDRVYIVKVPYCLRISEEIKI 341 + + N + LA N E +N + +F DR+ + +PY L + E+K+ Sbjct: 379 AIHKVEDLEE--NVNSLFLALMN-PE--DKKNIREFPSFSDRIQYINIPYVLDVETEVKV 433 Query: 342 YEKLLNHSELTHAPCAPGTLETLSRFSILSRLKEPENSSI------------------YS 383 + + P +E +R I SRLKE + + Sbjct: 434 LTNIFGRHVMDSF--LPMVMENFARVMISSRLKEKSDVMLEWIGDPAKYRRYCDANLMLL 491 Query: 384 KMRVYDGE-----SLKDTDPKAKSYQEYRDYAGVDEGMNGLSTRFAFKILSRVFNFDHVE 438 KM +Y G D EG +G S R + +I + ++ E Sbjct: 492 KMEIYSGAPPQWLQDDDRKALTAKLWRRIIEESNTEGSSGFSGRDSIRIFDQFYSMHAKE 551 Query: 439 VA-ANPVHLFYVLEQQIEREQFPQEQAERYLEFLKGYLIPKYAEFIGKEIQTAYLESYSE 497 + L ++ E+A L+ Y + ++++ + + Sbjct: 552 DSLITMPELCRFFRNLMK------ERAGLIPAGFLESLLRMYDYNVLQQVKESLYYYNED 605 Query: 498 YGQNIFDRYVTYADFWIQDQEYRDPDTGQLFDRESLNAELEKIEKPAGISNPKDFRNEIV 557 Y++ +F I + TG++ D NA LE IE +N R EI+ Sbjct: 606 RIALDVKNYISAVNFEI-GSTAKCLFTGEVLDIT--NAYLESIENRLFAANADQQRREIM 662 Query: 558 N---------FVLRARANNSGRNPNWTS-----YEKLRTVIEKKMFSNTEELLPVISFNA 603 L G++ T +E+ ++K++ E S Sbjct: 663 RIDVLKEYTTNALSVEMMVEGKDITDTRLFNSLHERYVHNLKKRVLEPFLENENFRSAIK 722 Query: 604 KTSTDEQKKHDDFVDR---------MMEKGYTRKQVRLLCEWYL 638 T+ K +D + M++ YT + +C + + Sbjct: 723 DYDTEGFKTYDKRIRSDVEFLINNMMVKFNYTEQGANEVCIYVI 766 >UniRef50_B8FIY2 Putative serine protein kinase, PrkA n=10 Tax=Deltaproteobacteria RepID=B8FIY2_DESAA Length = 790 Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 111/747 (14%), Positives = 225/747 (30%), Gaps = 149/747 (19%) Query: 21 LQEFLTTCRQDR-SAYANAAE---RLLMAIGEPVMVDTAQEPRLSRL--FSNRVIARYPA 74 L++FL + + N + ++ + P + +P + + + Sbjct: 32 LEQFLQIAASEPDRVFRNILQVFHDMIHSYVGPGSDEYLGDPETINFVYYDTHRLFVEGS 91 Query: 75 FEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSS---------------- 118 F+ + + ++ +G+ + +I GP G GKS+ Sbjct: 92 DNPFFADRLFANRFIQHVTTFRRGI-PQNRIYIFEGPHGSGKSTFLNNLLMKFEQYTKTP 150 Query: 119 -------------------------LAERLKSLMQ--------------LVPIYVLSANG 139 + ++LK+L++ L + + Sbjct: 151 AGVSYETIWRIDKNELGAGEIEAAAILKQLKNLVETPGVRGVTPMKGADLAALSNKNYLQ 210 Query: 140 ERSPVNDHPFCLFNPQEDAQILEKEYGIPR------------RYLGTIMSPWA----AKR 183 P +DHP +++++ P Sbjct: 211 VHCPNHDHPIMQIPKAYRRELIDELIDDPVFKKKILYQKQYQWIYRDKPCTICASLFRSL 270 Query: 184 LHEFGGDITKFRVVKVWPSILQQI---AIAKTEPGD--ENNQDISALVGKVDIRKLEHYA 238 L G F+++ P + ++ P D + +S LV + + L Sbjct: 271 LDVLGAPSKVFKMIYARPYQFNRRLGEGVSVFNPADMIPKSNLLSNLVLQQQLDSL--LR 328 Query: 239 QNDPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGI 298 ++ Y YS + N GI +++ A + L EG + + + + Sbjct: 329 SSNQVRYVYS-RYAKTNNGIYALMDIKDANKYRFNALHGIISEGVHKLEDVEE--DVHSL 385 Query: 299 ILAHSNESEWVTFRNNKNNEAFLDRVYIVKVPYCLRISEEIKIYEKLLNHSELTHAPCAP 358 LA N + +F DR+ +K+ Y L + E+KIY+ P Sbjct: 386 FLALMNPEDHN---QVDQALSFSDRITYIKINYVLDYNTEVKIYKSNFGDQIERRF--LP 440 Query: 359 GTLETLSRFSILSRLK---EP---------------ENSSIYSKMRVYDGE-----SLKD 395 LE ++ I +RLK EP + + + KM +Y G S +D Sbjct: 441 RVLENFAKVIISTRLKTSSEPLLEWIGDPYRYRRYCDRNLLLLKMDIYTGVIPAWLSERD 500 Query: 396 TDPKAKSYQEYRDYAGVDEGMNGLSTRFAFKILSRVF-NFDHVEVAANPVHLFYVLEQQI 454 + + +EG G S R + KI + + N L + Sbjct: 501 RQAFSAKRRRKVVAESENEGRAGFSGRDSIKIFNEFYTAVAKKGKLINMDMLVNFFRKHQ 560 Query: 455 EREQFPQEQAERYLEFLKGYLIPKYAEFIGKEIQTAYLESYSEYGQNIFDRYVTYADFWI 514 + + E L+ Y + +E++ + E N Y+ +F I Sbjct: 561 KGQDVIIP------EGFMESLVNSYNYMLLQEVKESLYYYNEERISNDIQNYLFAINFEI 614 Query: 515 QDQEYRDPDTGQLFDRESLNAELEKIEKP-AGISNPKD----FRNEIVN-FVLRARANNS 568 +E + TG+ E + L +E+ G P FR EI + + Sbjct: 615 GREE-KCVYTGEKL--EITESYLSSMEQRFMGAGVPGQAQLMFREEIQREYASKTLTQEM 671 Query: 569 G-RNPNWTSYEKLRTVIEKKMF-------------SNTEELLP--VISFNAKTSTDEQKK 612 G T ++E+ + N + +++ Sbjct: 672 GLEKKPITETAVYNKLMERYVHNLKEKVMDPFQENENFRNAIKDFGTDAFKTYDRRIREE 731 Query: 613 HDDFVDRMM-EKGYTRKQVRLLCEWYL 638 + + + GYT + R +C + + Sbjct: 732 VSFLMANLQKKYGYTDQGAREICMYVI 758 >UniRef50_D2EEA4 Putative serine protein kinase, PrkA n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EEA4_9EURY Length = 571 Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 67/461 (14%), Positives = 159/461 (34%), Gaps = 58/461 (12%) Query: 227 GKVDIRKLEHYAQNDPDAYGYSGALCRAN-----QG-IMEFVEMFKAPIKVLHPLLTATQ 280 GK+ +KL ++ + Y + + +G I+ E+ K + LL Q Sbjct: 121 GKLFYKKLNELGGDNSNVLAYDFGILGSQSAPSPRGNIIYISEVLKGSSSFANSLLDFVQ 180 Query: 281 EGNYNGTEGISALPFNGIILAHSNESEWVTFRNNKNNEAFLDRVYIVKVPYCLRISE-EI 339 + + F+ I++ +N ++ + L R I+ ++S+ E Sbjct: 181 DTRTKVSPSF-KESFDAIMIGTTNMDDYKK-IADSIKPYLLRRSNIIVFRSMTKLSDAET 238 Query: 340 KIYEKLLNHSELTHAPCAPGTLETLSRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPK 399 + + + ++ P L L+R + + L +N S+ K +Y+ + Sbjct: 239 ALNDIYTHAAKELDIHYPPHLLRMLARIWVEASLSHYDNISLKDKADMYNNVFIPGIKVS 298 Query: 400 AKSYQEYRDYAGV---DEG-MNGLSTRFAFKILSRVFNFDHVEVAANPVHLFYVLEQQIE 455 + + +EG G+ K S++ ++ ++ + L+ +I Sbjct: 299 LEDIIREATQKPILELEEGVKLGIPYDDMVKSPSKLLSYANLSKKIE-MESGNTLKDEIN 357 Query: 456 RE-----QFPQEQAERYLEFL-----------------------KGYLIPKYAEF---IG 484 + RY+E + Y E + Sbjct: 358 EKICLGRILDSVTGTRYIEDFLNTLEDLSSETKARVQPRENGEGSVIVNDAYNEIKRMMK 417 Query: 485 KEIQTAYLESYSEYGQNIFDRYVTYA------DFWIQDQEYRDPDTGQLFDRESLNAELE 538 ++ + +E SE +I ++Y+ D++ + P G L + + Sbjct: 418 NDV--SMIEYGSEKVHDIVNKYIINVYYMNKIGNGENDKKVKVPMFGTLKSIDYD--FVN 473 Query: 539 KIEKPAGISNPKDFRNEIVNFVLRARANNSGRNPNWTSYEKLRTVIEKKMFSNTEELLPV 598 +EK A + R I + + A ++ ++ + T+IE+ + + Sbjct: 474 DLEKRANL-RSDVLRESIYSIINYASIADNTKSVDELVKILTPTIIERYPEITNAVVDKL 532 Query: 599 ISFNAKTSTDEQKKHDDFVDRMMEKGYTRKQVRLLCEWYLR 639 + A T+T + + + ++ E GY + R+ + +L+ Sbjct: 533 STSVAGTATTMDQ--NRIISKLKEIGYCNQCARVAYDLFLK 571 >UniRef50_Q8TYU9 Mg-chelatase subunit ChlI and Chld (MoxR-like ATPase and vWF domain) n=1 Tax=Methanopyrus kandleri RepID=Q8TYU9_METKA Length = 818 Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 50/238 (21%), Positives = 81/238 (34%), Gaps = 45/238 (18%) Query: 104 QILYLLGPVGGGKSSLAERLKSLMQLVPIYVLSANGERSPVNDHPFCLFNPQEDAQILEK 163 + + + GP G GK++LA + L+ + + P + HP Sbjct: 46 RHVLIEGPPGIGKTTLARAVADLLP------PAEVVKGCPFHCHP--------------- 84 Query: 164 EYGIPRRYLGTIMSPWAAKRLHEFGGDITKFRVVKVWPSILQQIAIAKTEPGDENNQDIS 223 + P R E + + + I P D Sbjct: 85 ---------KEPVCPLCRAR-DEDELETETIPGCERFVRIQ---GSPDLTPED------- 124 Query: 224 ALVGKVDIRKLEHYAQNDPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGN 283 L+G +D Y DP A+ G L R N+G++ F E+ + P K+ + LL +E Sbjct: 125 -LLGDIDPIAALEYGPTDPRAF-TPGKLLRGNRGVVFFDEINRCPEKLQNALLQVLEEQR 182 Query: 284 YNGTEGISALPFNGIILAHSNESEWVTFRNNKNNEAFLDRVYIVKVPYCLRISEEIKI 341 P N +++A N E+ E LDR VK+ Y E +I Sbjct: 183 ATIAGYEVDYPANFVMIATMNPHEYAGTEELS--EVLLDRFDTVKMTYPKSKETEKRI 238 >UniRef50_C8SCW8 ATPase associated with various cellular activities AAA_5 n=2 Tax=Archaeoglobaceae RepID=C8SCW8_FERPL Length = 473 Score = 63.6 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 68/363 (18%), Positives = 125/363 (34%), Gaps = 58/363 (15%) Query: 17 EEFTLQEFLTTCRQDRSAYANAAERLLMAIGEPVM-VDTAQEPRLSRLFSNRVIARYPAF 75 EE+ +E + N E + + E ++ P + Sbjct: 2 EEYIFKEVEVKESSAPTFLLNGEEVDIFSDEFRAYWEKPLHELVREKILEYERRGEDPFY 61 Query: 76 EEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMQLVPIYVL 135 E G + E + + L + + +G G GK++ ++ + L+ + + Sbjct: 62 -EIVGKKIEKEMVKNALISGSS--------ILFVGKKGYGKTTFSKSIAKLLPERQLAI- 111 Query: 136 SANGERSPVNDHPFCLFNPQEDAQILEKEYGIPRRYLGTIMSPWAAKRLHEFGGDITKFR 195 + ++D+P + K + E Sbjct: 112 ----KGCKIHDNP-----------------------VRPSCFACKRKVMEE--------- 135 Query: 196 VVKVWPSILQQIAIAKTEPGDENNQDISALVGKVDIRKLEH-YAQNDPDAYGYSGALCRA 254 KV + + + I PGD L+G + I+K+ Y + P+ + G + +A Sbjct: 136 -EKVELTWIGRKWIRI--PGDPM-MTTRQLIGGISIQKIREGYDLDHPEVF-TPGRVLKA 190 Query: 255 NQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEG-ISALPFNGIILAHSNESEWVTFRN 313 N+GI F E+ P + L +E EG I L + I +A +N + + Sbjct: 191 NRGIAYFDELGSIPSALQTLLHELIEEKQVTTPEGEIVPLKIDAIFIASTNPANYRGTEA 250 Query: 314 NKNNEAFLDRVYIVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSRFSILSRL 373 K E LDR+ + + + EEI+I L N S A L+ L+R +R Sbjct: 251 IK--EPLLDRMEAIPIGPPETLKEEIEI--GLRNMSLKNGATIPEWHLKILARVVRYARN 306 Query: 374 KEP 376 KE Sbjct: 307 KER 309 >UniRef50_D2S953 Putative magnesium chelatase n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2S953_9ACTO Length = 511 Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 63/311 (20%), Positives = 111/311 (35%), Gaps = 64/311 (20%) Query: 78 FYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMQLVPIYVLSA 137 G ED + V + G + L LLG G GK+ L L L+ + Sbjct: 70 IVGFEDTVVPEVE--RALIAGHD-----LVLLGERGQGKTRLIRTLVGLLDEW-----TP 117 Query: 138 NGERSPVNDHPFCLFNPQEDAQILEKEYGIPRRYLGTIMSPWAAKRLHEFGGDITKFRVV 197 S +N+HP +S WA +++ E GD T Sbjct: 118 VLTGSELNEHPL------------------------APISVWAHRQIAEH-GDATPVG-- 150 Query: 198 KVWPSILQQIAIAKTEPGDENNQDISALVGKVDIRKLEH-YAQNDPDAYGYSGALCRANQ 256 W ++ P + + L+G VD K+ DP+ Y G + R N+ Sbjct: 151 --WLHRSERFGEKLATP----DTSVGDLIGDVDPIKVAEGRTLGDPETVHY-GLVPRTNR 203 Query: 257 GIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEWVTFRNNKN 316 GI E+ ++ LL +E + LP + +++A +N ++ + Sbjct: 204 GIFSVNELPDLAERIQVALLNVLEERDIQIRGYRVRLPLDLLLVASANPEDYTN--RGRI 261 Query: 317 NEAFLDRV-YIVKVPYCLRISEEIKIYEKLLNHSELT-------------HAPCAP-GTL 361 DR V+ Y + +++E+++ + + S L P P + Sbjct: 262 ITPLKDRFGAEVRTHYPIELADEVRLLTQEAHTSWLDGGAGGGRPGGEQLETPLVPEHLV 321 Query: 362 ETLSRFSILSR 372 E ++RF+ L R Sbjct: 322 EIVARFTRLVR 332 >UniRef50_Q1ILJ3 Magnesium protoporphyrin chelatase, putative n=9 Tax=Bacteria RepID=Q1ILJ3_ACIBL Length = 502 Score = 59.8 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 96/571 (16%), Positives = 177/571 (30%), Gaps = 111/571 (19%) Query: 45 AIGEPVMVDTAQEPRLSRLFSNRVIARYPAFEEFYGMEDAIE-QIVSYLKHAAQGLEEKK 103 + EP + + L +R+ F G ED + Q+V+ L + Sbjct: 15 SFSEPRLARRRVKDELRENLLDRLRQGGNIFPGIVGYEDTVTPQVVNALLS--------R 66 Query: 104 QILYLLGPVGGGKSSLAERLKSLMQLVPIYVLSANGERSPVNDHPFCLFNPQEDAQILEK 163 LLG G KS + L SL+ Y+ ++D+P+ Sbjct: 67 HNFILLGLRGQAKSRILRALTSLLDAETPYL-----AGCEIHDNPY-------------- 107 Query: 164 EYGIPRRYLGTIMSPWAAKRLHEFGGDITKFRVVKVWPSILQQIAIAKTEPGDENNQDIS 223 + + FG D + W S ++ + K D I+ Sbjct: 108 ----------DPICRRCKDMIKSFGDD---APIA--WLSAEERY-VEKLATPDVT---IA 148 Query: 224 ALVGKVDIRKLEHYAQNDPDAYGYS-GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEG 282 L+G +D K G L RAN+GI E+ K+ L QEG Sbjct: 149 DLIGDIDPIKAAKQGFTLASELTVHYGLLPRANRGIFAINELPDLAGKIQVGLFNIMQEG 208 Query: 283 NYNGTEGISALPFNGIILAHSNESEWVTFRNNKNNEAFLDRV-YIVKVPYCLRISEEIKI 341 + LP + ++ +N ++ K DR+ ++ Y + E I I Sbjct: 209 DVQIKGYPIRLPLDVALVFSANPEDYTA--RGKIITPLKDRIGSEIRTHYPSTVEEGISI 266 Query: 342 YEKLL-NHSELTHAPCAPGTLETLSRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKA 400 ++ + T E + + + ++R Sbjct: 267 TQQEAWTRRDGTRIHIPSYIHEIVEQIAFVAR---------------------------- 298 Query: 401 KSYQEYRDYAGVDEGMNGLSTRFAFKILSRVFNFDHVEVAANPVHLFYVLEQQIEREQFP 460 D VD+ +G+S R + V + + H I P Sbjct: 299 -------DDKRVDK-RSGVSQRLPISTVENVLSNAERRALRSGEHTVVPRVADI-YAALP 349 Query: 461 QEQAERYLEFLKGYLIPKYAEFIGKEIQTAYLESYSEYGQNIFDRYVTYADFWIQDQEYR 520 + LE I + I+TA ++Y Y Q + ++ E + Sbjct: 350 AITGK--LELEYEGEIKGADAIAREVIRTAIAKTYDRYFQGNNNHLKQVVQYFDLGGEVQ 407 Query: 521 DPDTGQLFDRESLNA------ELEKIE--------KPAGISNPKDFRNEIVNFVLRARAN 566 DT E L + +EKIE P ++ +F I+ + + Sbjct: 408 MLDTA--PAEEVLESMKNIQGLMEKIENVGAKTSDAPELQASAAEF---ILEGLHAHKRI 462 Query: 567 NSGRNPNWTSYEKLRTVIEKKMFSNTEELLP 597 +T+ EK ++ ++++F ++ + Sbjct: 463 GRTEERKFTAGEK-QSAKKEQLFREEDDFVR 492 >UniRef50_Q74N18 NEQ401 n=1 Tax=Nanoarchaeum equitans RepID=Q74N18_NANEQ Length = 330 Score = 58.6 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 45/173 (26%), Positives = 72/173 (41%), Gaps = 17/173 (9%) Query: 227 GKVDIRKLEHYAQNDP-DAYGYS--------GALCRANQGIMEFVEMFKAPIKVLHPLLT 277 G D+ + DP A Y G + RAN+G++ F E+ +AP K+ + LL Sbjct: 104 GSPDLNPEDIVGTIDPTKALKYGISIESFVPGKIFRANRGVLFFDEINRAPPKIQNLLLQ 163 Query: 278 ATQEGNYNGTEGISALPFNGIILAHSNESEWVTFRNNKNNEAFLDRVYIVKVPYCLRISE 337 A +EG + +P + I +A N E+ + +EA +DR+ I+ L E Sbjct: 164 ALEEGYVSLGPFDIDVPTDFIFIATMNPKEYEG--TTELSEALMDRLDII----YLDYPE 217 Query: 338 EIKIYEKLLNHSELTHAPCAPGTLETLSRFSILSRLKEPENSSIYSKMRVYDG 390 ++I EK + + P L S + L+ EN I R G Sbjct: 218 TLEI-EKQIVLEKGKKLVLFPDEL-LEKMLSFIRELRNDENLEIKPSPRASIG 268 >UniRef50_D2EEA6 Putative serine protein kinase, PrkA n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EEA6_9EURY Length = 530 Score = 55.9 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 54/260 (20%), Positives = 98/260 (37%), Gaps = 47/260 (18%) Query: 124 KSLMQLVPIYVLSANGERSPVNDHPFCLFNPQEDAQILEKEYGIPRRYLGTIMSPWAAKR 183 K ++ L+ +G++ N++P+ +F ++ L K+ T + Sbjct: 5 KKYSVSHDVFTLNIDGKKCQYNENPYNIFRSILPSKELNKDTRKLMNNKRTEICYHCESN 64 Query: 184 LHEF--GGDI--TKFRVVKVWP-SILQQIAIAKTEPGDEN---NQDISALVGKVDIRKLE 235 L + G K + K++P S + + + P N N + S L D KLE Sbjct: 65 LEKIIKDGKFDEDKINLEKIFPKSSIVEFGDSFLLPSFINVIMNSNRSILAISADKSKLE 124 Query: 236 HYAQNDPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPF 295 +P + + N F + +P Sbjct: 125 ---DINPKVFQLFNNIYDNN-----FSDNLGNK------------------------VPL 152 Query: 296 NGIILAHSNESEWVTFRNNKNNEA--FLDRVYIVKVPYCLRISEEIKIYEKLLNHSELTH 353 + +IL HSNES ++ ++ E+ L+R+ V V L SEE+K+ + S + Sbjct: 153 DSLILMHSNES-FMELNEDRKRESRPLLERIIRVDVRRNLSYSEEMKVAQ----ESNMPI 207 Query: 354 APCAPGTLETLSRFSILSRL 373 P LE +S+ ++LSRL Sbjct: 208 EKVVPKFLEYISKLNVLSRL 227 >UniRef50_D0L6A4 Mg-chelatase subunit ChlI-like protein n=20 Tax=Actinomycetales RepID=D0L6A4_GORB4 Length = 480 Score = 54.8 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 44/269 (16%), Positives = 93/269 (34%), Gaps = 47/269 (17%) Query: 106 LYLLGPVGGGKSSLAERLKSLMQLVPIYVLSANGERSPVNDHPFCLFNPQEDAQILEKEY 165 + +LG G GK+ + L L+ + S + +HP+ P + Sbjct: 82 VVMLGERGQGKTRILRTLVGLLDEW-----TPVIAGSELGEHPYEPITPASIRKAANLLD 136 Query: 166 GIPRRYLGTIMSPWAAKRLHEFGGDITKFRVVKVWPSILQQIAIAKTEPGDENNQDISAL 225 +P + R + + + ++ L Sbjct: 137 DLPIEW---------RHRSQRYSEKLAT------------------------PDTSVADL 163 Query: 226 VGKVDIRKLEH-YAQNDPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNY 284 VG +D K+ + DP+ + G + RA++GI+ E+ ++ +L +E + Sbjct: 164 VGDIDPMKVAEGRSLGDPETIHF-GLIPRAHRGIVAINELPDLAERIQVSMLNVMEERDI 222 Query: 285 NGTEGISALPFNGIILAHSNESEWVTFRNNKNNEAFLDRV-YIVKVPYCLRISEEIKIYE 343 LP + +++A +N ++ + DR ++ Y L + +EI + Sbjct: 223 QVRGYTLRLPLDVLVMASANPEDYTN--RGRIITPLKDRFGAEIRTHYPLELDDEIAV-- 278 Query: 344 KLLNHSELTHAPCAPGTLETLSRFSILSR 372 + A E L+RF+ +R Sbjct: 279 --IEQEADLTASVPTFITEILARFTRYAR 305 >UniRef50_Q2J637 Magnesium chelatase, ChlI subunit n=45 Tax=Actinobacteria (class) RepID=Q2J637_FRASC Length = 507 Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 64/327 (19%), Positives = 110/327 (33%), Gaps = 57/327 (17%) Query: 55 AQEPRLSRLFSNRVI---ARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGP 111 A P + L N V P F G ++ + V + G + + LG Sbjct: 55 AHRPVRTELRDNLVALMQGDGPRFPGIVGFDETVLPQVE--RAILAGHD-----IVFLGE 107 Query: 112 VGGGKSSLAERLKSLMQLVPIYVLSANGERSPVNDHPFCLFNPQEDAQILEKEYGIPRRY 171 G GK+ L L SL+ V +NDHP+ + A Sbjct: 108 RGQGKTRLIRTLVSLLDEWSPAV-----AGCEINDHPYAPVCGRCRA---------LAAD 153 Query: 172 LGTIMSPWAAKRLHEFGGDITKFRVVKVWPSILQQIAIAKTEPGDENNQDISALVGKVDI 231 LG + R F + + + L+G VD Sbjct: 154 LGDALPVVWRHRGERFSEKLAT------------------------PDTSVGDLIGDVDP 189 Query: 232 RKLEH-YAQNDPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGI 290 K+ DP+ Y G + R N+GI E+ ++ LL +E + + Sbjct: 190 VKVAEGRTLGDPETVHY-GLVPRTNRGIFSVNELPDLAERIQVALLNVLEERDIQVRGYL 248 Query: 291 SALPFNGIILAHSNESEWVTFRNNKNNEAFLDRV-YIVKVPYCLRISEEIKIYEKLLNHS 349 LP + +++A +N ++ + DR V+ Y L +++E+ + + S Sbjct: 249 LRLPLDLLLVASANPEDYTN--RGRIITPLKDRFGAEVRTHYPLHLTDELALIRQEAVMS 306 Query: 350 ELTHAPCAP----GTLETLSRFSILSR 372 AP +E ++RF+ L R Sbjct: 307 WAGSPLGAPEIPDHLVEIVARFTRLVR 333 >UniRef50_Q7UYY5 Probable magnesium protoporphyrin chelatase n=4 Tax=Planctomycetaceae RepID=Q7UYY5_RHOBA Length = 482 Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 67/443 (15%), Positives = 142/443 (32%), Gaps = 58/443 (13%) Query: 64 FSNRVIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAERL 123 FS + R F G ED + I G + + +G G KS + Sbjct: 42 FSRMLANREELFPGIVGYEDTV--IPEISLALLAGHD-----MLFMGEKGQAKS---RIM 91 Query: 124 KSLMQLVPIYVLSANGERSPVNDHPFCLFNPQEDAQILEKEYGIPRRYLGTIMSPWAAKR 183 + L+Q + ++ + PV++ P L K + W R Sbjct: 92 RQLVQFLDPWIPFIDHPDLPVHEDPLNPI------SSLGKRLVAEHSPEDIQIGWW--HR 143 Query: 184 LHEFGGDITKFRVVKVWPSILQQIAIAKTEPGDENNQDISALVGKVDIRKLEHYAQN-DP 242 + ++ P I + +P + L G V + E + P Sbjct: 144 SERY--------AERLSPGTKFADIIGEIDP--------AKLTGGVSMSAEEALSFGLIP 187 Query: 243 DAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAH 302 + +GI E+ + V L +E + + +IL Sbjct: 188 RMH----------RGIFAMNELPELDDLVQVGLFNILEERDVQIRGYPIRFELDVMILFS 237 Query: 303 SNESEWVTFRNNKNNEAFLDRV-YIVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTL 361 +N S + R+ K DR+ IV+ Y ++ I+I ++ + P Sbjct: 238 ANPSTYN--RSGKVIPQLKDRIGTIVQTHYPSERTQGIEILQQEVGDDLGGPYPV--HVP 293 Query: 362 ETLSRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLST 421 + I+ + S Y + G S + + ++ G+ G + Sbjct: 294 LF--MYQIIEEITHQARQSKY--IDQASGVSARFSLANFRTIVASARQRGIVHGESPAVP 349 Query: 422 RFAFKILSRVFNFDHVEVAANPVHLFYVLEQQIEREQFPQEQAERYLEFLKGYLIPKYAE 481 R + L ++ ++ + + + E+Q+ + + E+++ + + + AE Sbjct: 350 RISD--LGHLYASSLGKLELDLMGTHQMTEKQVIDSVIAEAIQTVFGEYIEEHGLAEIAE 407 Query: 482 FIGKEIQTAY--LESYSEYGQNI 502 ++ + SEY + + Sbjct: 408 IFRGGVRVEVGTMLPSSEYAERL 430 >UniRef50_P32812 Uncharacterized protein in gldA 5'region (Fragment) n=27 Tax=Firmicutes RepID=YGL1_BACST Length = 97 Score = 53.2 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 12/95 (12%) Query: 12 EAAKDEEFTLQEFLTTCRQDRSAYANAAERLLMAIGEPVMVDTAQEPRLSRLFSNRVIAR 71 E E T E+L ++ +A R+ I + + + R + F+ Sbjct: 14 EERLKWEGTFAEYLEILKEKPWIAQSAHSRVYNMIKDAGIEEINGRKR-YKFFNQ----- 67 Query: 72 YPAFEEFYGMEDAIEQIV-SYLKHAAQGLEEKKQI 105 E +G+++A+E++V Y AA+ L+ +K+I Sbjct: 68 -----EIFGLDEALERLVEEYFHPAAKRLDVRKRI 97 >UniRef50_Q8TXP4 Predicted ATP-dependent protease n=1 Tax=Methanopyrus kandleri RepID=Q8TXP4_METKA Length = 471 Score = 53.2 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 76/472 (16%), Positives = 152/472 (32%), Gaps = 82/472 (17%) Query: 65 SNRVIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAERLK 124 ++ I P + G + A+E Y K AA+ +++ L L+GP G GKS +A+ + Sbjct: 14 ADIKIPDNP-LDMVIGQDHAVE----YAKLAAK----QRRHLLLVGPPGVGKSMIAQGIA 64 Query: 125 SLM----QLVPIYVLSANGERSPV----------NDHPFCLFNPQEDAQILEKEYGIPRR 170 L+ + + +Y AN ER P+ + L +P+E + + ++ G Sbjct: 65 ELLPKPREQIEVYHNPANPER-PIVKVRTRDEVEKEDSDTLLSPEEVPEPVAEQLGFRCP 123 Query: 171 YLGTIMSP----WAAKRLHEFG---------GDITKFRVVKVWPSILQQIAI-------- 209 G P ++ T +V ++ + +I + Sbjct: 124 SCGEYSDPDCRYCPRCGAQKYSARTYRATQYDRATSRQVAVIYERVGDRIRVVKPDSEGE 183 Query: 210 --AKTEPGDEN------NQDISALVGKVD---IRKLEHYAQNDPDAYGYSGALCRANQGI 258 P D + L+G V E + P GA+ A++G+ Sbjct: 184 EKKVLVPLDRKPFVQATGASETELLGDVKHCPWGGDEQLGEP-PYKRVIPGAVHEAHEGV 242 Query: 259 MEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISA----------LPFNGIILAHSNESEW 308 + F++ + LLTA QE Y T +P + I++ N + Sbjct: 243 L-FIDELAQLGPLQQHLLTAMQEKEYPITGKNPQSSGAAVRVEGVPCDFILVGACNIQDL 301 Query: 309 VTFRNNKNNEAFLDRVYIVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSRFS 368 + Y V + + +EE + E+ P Sbjct: 302 PMILS-PLRSRIQGEGYEVLMKTTMPDTEENRAKLAQFVAQEVERDGRIPHATREAVEEI 360 Query: 369 I-----LSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLSTRF 423 + +R+ + E ++ ++R G D +Y + V + Sbjct: 361 VKEARRRARVIDGERDALTLRLRDLSGVVRLAGDLAVMEGAKYIEPKHVRAAIKKAKP-V 419 Query: 424 AFKILSRVFNFDH-------VEVAANPVHLFYVLEQQIEREQFPQEQAERYL 468 +I+ + + ++P V++ + QE Y+ Sbjct: 420 EDQIIEEYGSLEEGLRRDVATCSLSSPAAQQRVIQGDTTDSYYHQEDKRGYI 471 >UniRef50_A8MC50 ATPase associated with various cellular activities AAA_5 n=6 Tax=Thermoproteaceae RepID=A8MC50_CALMQ Length = 334 Score = 52.1 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 5/109 (4%) Query: 223 SALVGKVDIRKLEHYAQNDPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEG 282 + L G +DI + P AY G L ++ ++ E+ + LL QE Sbjct: 110 TELTGDIDIAVALQAGLDHPLAY-IPGPLVLSHGKVLIMDEINRLNPYSQASLLQVLQEH 168 Query: 283 NYNGTEGISALPFNGIILAHSNESEWVTFRNNKNNEAFLDRVYIVKVPY 331 + + +++A SN +E+ EA DR+ +V++ Y Sbjct: 169 YVYI--RGFRIRSDFLMIATSNPAEYSGVYELS--EALADRMKVVEIQY 213 >UniRef50_C9XJV7 Putative sigma-54-dependent transcriptional regulator n=5 Tax=Clostridiales RepID=C9XJV7_CLODC Length = 346 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 47/123 (38%), Gaps = 7/123 (5%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G AN G++ E+ PI++ LL QE + + + I++ +N + Sbjct: 114 GKFELANGGVVFLDEIGDMPIQLQSKLLRVLQEKKFTRIGSNELIDIDVRIISATNRDLF 173 Query: 309 VTFRNNKNNEAFLDRVYIV--KVPYCLRISEEIKIY-----EKLLNHSELTHAPCAPGTL 361 + NK E R+ ++ +VP ++I+I +K + P Sbjct: 174 ELVKENKFREDLYYRLNVIPLEVPPLRERGDDIQILINNFIDKYSRKMKKNVYHIEPDVE 233 Query: 362 ETL 364 + L Sbjct: 234 QML 236 >UniRef50_C0GH19 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GH19_9FIRM Length = 739 Score = 49.4 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 47/139 (33%), Gaps = 3/139 (2%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G AN G + E+ P + +L QE G ++P + ++A +N Sbjct: 517 GKFELANGGTIFLDEIGDMPFNMQAKMLRVLQEREIERIGGHHSIPIDVRVIAATNRDLR 576 Query: 309 VTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 + N+ E R+ + + +P ++ +I + + L P + Sbjct: 577 EEIKANRFREDLYYRLDVLSISIPPLREMASDIPVLTQSLIERICKKHHVPPKKVSEEVM 636 Query: 367 FSILSRLKEPENSSIYSKM 385 + R P N M Sbjct: 637 -GVFCRYPWPGNVRELENM 654 >UniRef50_B9L3Z1 Magnesium chelatase subunit ChlI n=2 Tax=Bacteria RepID=B9L3Z1_THERP Length = 466 Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 68/331 (20%), Positives = 125/331 (37%), Gaps = 62/331 (18%) Query: 73 PAFEEFYGMEDA-IEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM-QLV 130 P F G E+ I Q+ + + Q + LG G K+ +A L +L+ + + Sbjct: 37 PIFPGIIGYEETVIPQVENAILAG--------QDIIFLGERGQAKTRMARLLVNLLDEEI 88 Query: 131 PIYVLSANGERSPVNDHPFCLFNPQEDAQILEKEYGIPRRYLGTIMSPWAAKRLHEFGGD 190 PI S VND+PF +S +A + E G + Sbjct: 89 PIVA------GSEVNDNPF------------------------DPISKYARDLIAEMGDE 118 Query: 191 ITKFRVVKVWPSILQQIAIAKTEPGDENNQDISALVGKVDIRKLEH--YAQNDPDAYGYS 248 + W ++ A P + I+ L+G+VD K+ Y ++ + Sbjct: 119 ---TPIA--WIRREERYAEKLATP----DTTIADLIGEVDPIKVAEGRYLSDELTIH--Y 167 Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G + R N+GI E+ ++ LL +E + LP + ++A +N ++ Sbjct: 168 GLIPRTNRGIFVINELPDLAERIQVGLLNIMEERDVQIRGYRVRLPLDVFVVASANPEDY 227 Query: 309 VTFRNNKNNEAFLDRV-YIVKVPYCLRISEEIKIYEKLLNHSELTHAPCA-PGTL-ETLS 365 + DR ++ Y I EI I E+ E+ P + E ++ Sbjct: 228 TN--RGRIITPLKDRFGAQIRTHYPRTIEHEIAIMEQERMPVEVPGITVTVPQYMREIVA 285 Query: 366 RFSILSRLKEPE---NSSIYSKMRVYDGESL 393 + L+R + P+ S + ++M V + E+L Sbjct: 286 EITHLAR-RSPDISQRSGVSARMSVANYETL 315 >UniRef50_D1CAP1 Mg-chelatase subunit ChlI-like protein n=3 Tax=Bacteria RepID=D1CAP1_SPHTD Length = 465 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 52/256 (20%), Positives = 91/256 (35%), Gaps = 45/256 (17%) Query: 104 QILYLLGPVGGGKSSLAERLKSLMQLVPIYVLSANGERSPVNDHPFCLFNPQEDAQILEK 163 Q + LG G K+ +A L +L+ V S ++D+PF Sbjct: 61 QDIIFLGERGQAKTRMARSLVNLLDEEVPAV-----AGSEIHDNPF-------------- 101 Query: 164 EYGIPRRYLGTIMSPWAAKRLHEFGGDITKFRVVKVWPSILQQIAIAKTEPGDENNQDIS 223 +S +A + E GD T VW ++ A P + I+ Sbjct: 102 ----------APISRYARDLIAE-KGDYTPI----VWIRREERYAEKLATP----DTTIA 142 Query: 224 ALVGKVDIRKLEH--YAQNDPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQE 281 L+G+VD K+ Y ++ + G + R N+GI E+ ++ LL +E Sbjct: 143 DLIGEVDPIKVAEGRYLSDELTIH--YGLIPRTNRGIFAINELPDLAERIQVGLLNILEE 200 Query: 282 GNYNGTEGISALPFNGIILAHSNESEWVTFRNNKNNEAFLDRV-YIVKVPYCLRISEEIK 340 + LP + I+A +N ++ + DR ++ Y I EI+ Sbjct: 201 RDVQIRGYRIRLPLDVYIVASANPEDYTN--RGRIITPLKDRYGSQIRTHYPETIDLEIE 258 Query: 341 IYEKLLNHSELTHAPC 356 I E+ + Sbjct: 259 IMEQERRQFDTDGIEV 274 >UniRef50_A0RXY9 Mg-chelatase subunit n=1 Tax=Cenarchaeum symbiosum RepID=A0RXY9_CENSY Length = 585 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 56/263 (21%), Positives = 102/263 (38%), Gaps = 26/263 (9%) Query: 107 YLLGPVGGGKSSLAERL-KSLMQLVPIYVLSANGERSPVNDHPFCLFNPQEDAQILEKEY 165 +L+G +G K+ L + ++L+ +P+ + ++ P++ + A LE Sbjct: 137 FLIGQMGQAKTRLVRSIAENLLSPIPV-IRNSATNDCPMD------LPAADLADALEGTG 189 Query: 166 GIPRRYLGTIMSPWAAKRLHEFGGDITKFRVVKVWPSILQQIAIAKTEPGDENNQDISAL 225 G R +SP + + L E G + V + + + +A D +D L Sbjct: 190 GSSRPVFH--VSPESLEVLRERG---LETPVEWLGGARRFRYVLAT---PDTTVRD---L 238 Query: 226 VGKVDIRKLEHYAQNDPDAYGYS-GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNY 284 VG +D K+ YS G L +A GI E+ + LL+ QEG + Sbjct: 239 VGSIDAVKVAKKGTEMYRIDSYSPGQLMQAKHGIFCIDELPVLDPRKQVALLSVLQEGRF 298 Query: 285 NGTEGISALPFNGIILAHSNESEWVTFRNNKNNEAFLDRVYI-VKVPYCLRISEEIKIYE 343 ++ A +N ++ + + E LDR+ V Y I +E+ I Sbjct: 299 TTGPYPVYFEPRTMLFATANPVDYTH--SGRVIEPLLDRLASHVHTHYPPTIHDEMMI-- 354 Query: 344 KLLNHSELTHAPCAPGTLETLSR 366 ++ + L A A L L+ Sbjct: 355 -IMQEARLPPAAVAELPLRALAG 376 >UniRef50_B3QXN8 Magnesium chelatase, subunit ChlI family n=11 Tax=Bacteria RepID=B3QXN8_CHLT3 Length = 526 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 60/343 (17%), Positives = 107/343 (31%), Gaps = 77/343 (22%) Query: 102 KKQILYLLGPVGGGKSSLAERLKSLMQLVPIYVLSANGERSPVNDHPFCLFNPQEDAQIL 161 K + LLG G K+ L L +L+ + + S +ND PF Sbjct: 96 SKHDIILLGLRGQAKTKLIRMLSTLLDEF-----TPIIKGSEINDDPFNPL------SKF 144 Query: 162 EKEYGIPRRYLGTIMSPWAAKRLHEFGGDITKFRVVKVWPSILQQIAIAKTEPGDENNQD 221 +E + G R + + V Sbjct: 145 GRE---KVLHEGDETDIEWLHRSERYSEKLATPDVT------------------------ 177 Query: 222 ISALVGKVDIRKLEHY--AQNDPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTAT 279 I+ L+G +D K + D + + G + R N+GI E+ ++ LL Sbjct: 178 IADLIGDIDPIKAATHRLTYADENVIHF-GLIPRTNRGIFAINELPDLQPRIQVGLLNIM 236 Query: 280 QEGNYNGTEGISALPFNGIILAHSNESEWVTFRNNKNNEAFLDRVYIVKVPYCLRISEEI 339 QE + +P + I+ +N E + +R I+ + Sbjct: 237 QEKDIQIRGFQVRIPLDIFIIYSANP------------EDYTNRGNIIT-------PLKD 277 Query: 340 KIYEKLLNHSELTHAPCAPGTLETLSRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPK 399 +I +++ H P T+E I R + SS ++ Y E ++ T Sbjct: 278 RIDSQIITHY--------PKTVEI--GIQITEREAWTKRSSAKIEVPYYFKEIIEHTA-- 325 Query: 400 AKSYQEYRDYAGVDEGMNGLSTRFAFKILSRVFNFDHVEVAAN 442 E R VD+ +G+S R + + + N Sbjct: 326 ----FEARRSEYVDQ-KSGVSARLTISAMENLVSNAERRAILN 363 >UniRef50_Q4T8U0 Lon protease homolog (Fragment) n=4 Tax=Clupeocephala RepID=Q4T8U0_TETNG Length = 1085 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 50/138 (36%), Gaps = 21/138 (15%) Query: 3 IFDHYRQRYEAAK---------DEEFTLQEFLTTCRQDRSAYANAAERLL-MAIGEPVMV 52 I + +R+R + +EE L + + N + L M G Sbjct: 468 IEEKFRERLKERSVPQPIMEVINEELHKLALLDNHSSEFNVTRNYLDWLTSMPWGTNSEE 527 Query: 53 DTAQEPRLSRLFSNRVIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPV 112 + A + L + YGMED ++I+ ++ + + +IL GP Sbjct: 528 NLALDRAREVLEEDH-----------YGMEDVKKRILEFIAVSQLRGSTQGKILCFHGPP 576 Query: 113 GGGKSSLAERLKSLMQLV 130 G GK+S+A + + Sbjct: 577 GVGKTSIARSIARALNRE 594 >UniRef50_Q7KUT2 Lon protease homolog n=10 Tax=Coelomata RepID=Q7KUT2_DROME Length = 1024 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 10/115 (8%) Query: 16 DEEFTLQEFLTTCRQDRSAYANAAERLLMAIGEPVMVDTAQEPRLSRLFSNRVIARYPAF 75 DEE T FL + + + N + L P V + + L + A Sbjct: 480 DEELTKLNFLESHSSEFNVTRNYLDWLTSL---PWGVISTENLCLEK-------ATETLN 529 Query: 76 EEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMQLV 130 ++ YGMED ++I+ ++ ++ + +IL GP G GK+S+A+ + + Sbjct: 530 DDHYGMEDIKKRILEFIAVSSLKGSTQGKILCFHGPPGVGKTSIAKSIARALNRE 584 >UniRef50_D0LXC8 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LXC8_HALO1 Length = 451 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 45/120 (37%), Gaps = 2/120 (1%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 GA AN G + E+ + P+ + LL + S+ + +LA +N Sbjct: 224 GAFEAANGGTLFLDELGEMPLDLQTRLLGVLERRVVQRLGSTSSRAIDVRVLAATNRDLR 283 Query: 309 VTF--RNNKNNEAFLDRVYIVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 +N + + F V +++P E+I +Y + T+E L++ Sbjct: 284 REVNRKNFREDLYFRLAVVTIEMPPLRDRPEDIALYVEDFLRDSAGGVRIDAPTMERLAQ 343 >UniRef50_C0QJP8 Sigma-54 dependent DNA-binding response regulator n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QJP8_DESAH Length = 467 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 26/168 (15%), Positives = 44/168 (26%), Gaps = 20/168 (11%) Query: 203 ILQQIAIAKTEPGD----ENNQDISALVGKVDIRKLEHYAQNDPDAYGYSGALCRANQGI 258 + A D N S L G A G L +AN G Sbjct: 180 ENSRRASKPFIAVDCGALPQNLLESTLFGHEK-------GSFTGAARRQDGLLVQANGGT 232 Query: 259 MEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEWVTFRNNKNNE 318 + E+ + P+ L QE G +P + ++A +N + + Sbjct: 233 LMLDEIGELPLDAQKSFLRTLQERCVRPIGGTLEIPVDIRLVAATNLDLDQRVKEGLFRQ 292 Query: 319 AFLDRVY--IVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETL 364 L R+ +K+P + + L Sbjct: 293 DLLYRIRAMEIKLPPLRDRR-------QDIEEITLKKVHELSHRYNIA 333 >UniRef50_B5GST7 Regulatory protein n=1 Tax=Streptomyces clavuligerus ATCC 27064 RepID=B5GST7_STRCL Length = 652 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 9/106 (8%) Query: 54 TAQEPRLSRLFSNRVIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVG 113 + L+ F+ P F G DA+EQI +++ A E + ++ L GP G Sbjct: 196 ARRRSTLAHSFTQLPEPEGP----FTGRRDAVEQIAQWVRTARAATETRPTVVVLHGPAG 251 Query: 114 GGKSSLAER----LKSLMQLVPIYVL-SANGERSPVNDHPFCLFNP 154 G+++LA R LK L + + L A+G P D L N Sbjct: 252 SGRTALALRASHHLKDLFRGACLVDLRGASGRPLPTRDALLHLLNR 297 >UniRef50_D2EEA3 Putative serine protein kinase, PrkA n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EEA3_9EURY Length = 165 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 51/119 (42%), Gaps = 6/119 (5%) Query: 12 EAAKDEEFTLQEFLTTCRQDRSAYANAAERLLMAIGEPVMVDTAQEPRLSRLFSNRVIAR 71 + + + +L+EFL + NA++R L AI D + + + R + Sbjct: 4 KTSFKQRMSLEEFLNFSADKPELFYNASQRALQAIESYGKRDGKWQFLVKQPNDKRNVKT 63 Query: 72 YPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMQLV 130 +F +Q VS+LK AA+ + + ++ ++ P G GKS L +++ Sbjct: 64 RYDSSDF------ADQFVSFLKRAARNSDMRNKLTVIISPPGAGKSEFLNTLSETLRVY 116 >UniRef50_Q2S060 Magnesium chelatase, subunit ChlI family n=6 Tax=Bacteroidetes RepID=Q2S060_SALRD Length = 524 Score = 45.9 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 49/291 (16%), Positives = 93/291 (31%), Gaps = 66/291 (22%) Query: 39 AERLLMAIGEPVMVDTAQEPRLSRLFSNRVIARYPAFEEFYGMEDA-IEQIVSYLKHAAQ 97 A+ + ++ + + + Q+ R +P G ++ I +I + + Sbjct: 21 ADYQVRSVKDELRANLMQKLRAGE-------EVFPG---ILGYDETVIPRIQNAILA--- 67 Query: 98 GLEEKKQILYLLGPVGGGKSSLAERLKSLMQLVPIYVLSANGERSPVNDHPFCLFNPQED 157 K L LLG G KS L L L+ + E +P+N+ PF Q Sbjct: 68 -----KHDLILLGLRGQAKSRLIRMLPRLLDDHIPVI-----EDTPLNEDPFNPITKQGR 117 Query: 158 AQILEKEYGIPRRYLGTIMSPWAAKRLHEFGGDITKFRVVKVWPSILQQIAIAKTEPGDE 217 A + E+ P W + P Sbjct: 118 AIVEERGDDTPIE-----------------------------WLPREARYGEKLATP--- 145 Query: 218 NNQDISALVGKVDIRKLE----HYAQNDPDAYGYSGALCRANQGIMEFVEMFKAPIKVLH 273 + I+ L+G +D K YA + + G + R N+GI E+ ++ Sbjct: 146 -DTTIADLIGDIDPIKAANERLTYADEEVIHF---GIVPRTNRGIFAINELPDLQPRIQV 201 Query: 274 PLLTATQEGNYNGTEGISALPFNGIILAHSNESEWVTFRNNKNNEAFLDRV 324 L +E + P + +++ +N ++ + N DR+ Sbjct: 202 GLFNIMEEQDIQIRGFNVRFPLDVMMVFSANPEDYTSRGNLVT--PLKDRI 250 >UniRef50_C6DXM3 Sigma-54 interaction domain family protein n=3 Tax=Clostridium RepID=C6DXM3_CLOBO Length = 585 Score = 45.5 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 39/177 (22%), Positives = 66/177 (37%), Gaps = 12/177 (6%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G AN+G + E+ P+ + LL QE + + ++A +N++ Sbjct: 359 GKFELANKGTIFLDEIGDMPLYLQTKLLRVLQERRIIKIGSNKPIDIDVRVIAATNKNLV 418 Query: 309 VTFRNNKNNEAFLDRVYIV--KVPYCLRISEEIKI--------YEKLLNHSELTHAPCAP 358 NK E R+ ++ +P ++IKI Y KLL+ + Sbjct: 419 KLIEENKFREDLYYRLNVIPFNIPPLRERIQDIKILVYNFIEKYTKLLDK-HFSSIHIDN 477 Query: 359 GTLETLSRFSILSRLKEPENS-SIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDE 414 ET +S ++E EN+ M DG D+ P + Y E + G E Sbjct: 478 KVWETFYNYSWPGNIRELENTIEFMINMLGTDGNLTIDSIPNSVLYNERKIKKGKKE 534 >UniRef50_D1BA81 ATP-dependent protease La n=2 Tax=Synergistaceae RepID=D1BA81_THEAS Length = 781 Score = 45.5 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 14/132 (10%) Query: 5 DHYRQRYEAAK---DEEFTLQEFLTTCRQDRSAYANAA---ERLLMAIGEPVMVDTAQEP 58 D YR R E +K + + + L + S A AA L I P T Sbjct: 252 DEYRARIEKSKMPKEAKEKARYELDRLSKMPSTSAEAAVCRTYLDWLISLPWANQTKDRL 311 Query: 59 RLSRLFSNRVIARYPAFEEFYGMEDAIEQIVSYLKHAA-QGLEEKKQILYLLGPVGGGKS 117 + + +V+ E+ YG+++ ++IV +L G + + Q+L +GP G GK+ Sbjct: 312 EIG--LAQQVL-----DEDHYGLKEVKDRIVEFLAVRKLAGNDVRAQVLCFVGPPGVGKT 364 Query: 118 SLAERLKSLMQL 129 SLA + + Sbjct: 365 SLARSIARALNR 376 >UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional regulator, Fis family n=12 Tax=Deltaproteobacteria RepID=A1ATK4_PELPD Length = 480 Score = 45.5 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 31/204 (15%), Positives = 57/204 (27%), Gaps = 10/204 (4%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 G +ANQG + E+ P+ + +L QE G ++ N I+A +N+ Sbjct: 230 QGKFEQANQGTIFLDEIGDMPLDLQAKILRVLQEHEVTRVGGTQSIAVNVRIVAATNQEL 289 Query: 308 WVTFRNNKNNEAFLDRVYIVKVPY--CLRISEEIKIYEKLLNHSELTHAPCAPGTLETLS 365 R + E R+ +V + ++I + T P L + Sbjct: 290 QERVRQREFREDLYYRLNVVPITLAPLRERRDDIPELVRYFLDRTCTELSIPPKQLTPEA 349 Query: 366 RFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLSTRFAF 425 ++LSR P N + + E EG + Sbjct: 350 M-ALLSRHSWPGNVR-----ELENTIKRAVILSNDPMLTEADFDGLQPEGEE--TAMTPQ 401 Query: 426 KILSRVFNFDHVEVAANPVHLFYV 449 + + Sbjct: 402 DASLEAIVEAKLRSCLTGIEKLDK 425 >UniRef50_Q6C0B5 Lon protease homolog n=1 Tax=Yarrowia lipolytica RepID=Q6C0B5_YARLI Length = 1177 Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 46/121 (38%), Gaps = 10/121 (8%) Query: 9 QRYEAAKDEEFTLQEFLTTCRQDRSAYANAAERLLMAIGEPVMVDTAQEPRLSRLFSNRV 68 + + +EE T + + + S N + + D R N Sbjct: 566 ENIQKVFEEEMTRLQSMEPSSSEYSVTRNYLDWITQIPWNKTTED--------RF--NLP 615 Query: 69 IARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMQ 128 A+ E YGM++ ++I+ ++ + +IL L GP G GK+S+ + + + Sbjct: 616 QAKDVLDSEHYGMKEVKDRILEFIAVSRMKGGLTGKILLLQGPPGVGKTSIGKSIAKALN 675 Query: 129 L 129 Sbjct: 676 R 676 >UniRef50_Q10MJ8 Lon protease homolog n=4 Tax=Oryza sativa RepID=Q10MJ8_ORYSJ Length = 948 Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 52/136 (38%), Gaps = 21/136 (15%) Query: 5 DHYRQRYEAAKD-----------EEFTLQEFLTTCRQDRSAYANAAERLLMAIGEPVMVD 53 + +R+R E+ K+ EE T + L + S +N + L + + Sbjct: 300 EKFRKRIESRKEKCPSHILQVIEEELTKLQLLEASSSEFSVTSNYLDWLTVLPWGDYSDE 359 Query: 54 TAQEPRLSRLFSNRVIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVG 113 R R+ E+ YG+ D E+I+ ++ + +I+ L GP G Sbjct: 360 NFDVLRAQRIL----------DEDHYGLTDVKERILEFIAVGKLRGSSQGKIICLCGPPG 409 Query: 114 GGKSSLAERLKSLMQL 129 GK+S+ + + Sbjct: 410 VGKTSIGRSVARALNR 425 >UniRef50_Q21NY8 Sigma-54 factor, interaction region n=9 Tax=Bacteria RepID=Q21NY8_SACD2 Length = 503 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 10/130 (7%) Query: 222 ISALVGKVDIRKLEHYAQNDPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQE 281 S L G +K N+ G + A+ G + E+ P+ + LLTA ++ Sbjct: 257 ESELFG---YKKGAFTGANEDRV----GRIKAADGGTLFLDEIGNLPLHLQAKLLTALEQ 309 Query: 282 GNYNGTEGISALPFNGIILAHSNESEWVTFRNNKNNEAFLDRVYIVKV---PYCLRISEE 338 G ++PF+ ++A +N + K + L R+ V++ P R+ + Sbjct: 310 RRITPVGGNQSIPFDARVIAATNLTMQQLNDEQKFRQDLLFRLNTVEIHLPPLRQRVDDI 369 Query: 339 IKIYEKLLNH 348 I E L H Sbjct: 370 QAIAEYYLAH 379 >UniRef50_A8XFM8 Lon protease homolog n=1 Tax=Caenorhabditis briggsae RepID=A8XFM8_CAEBR Length = 990 Score = 44.7 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 10/115 (8%) Query: 16 DEEFTLQEFLTTCRQDRSAYANAAERLLMAIGEPVMVDTAQEPRLSRLFSNRVIARYPAF 75 +EE T +FL + S N E L P + + + RLS A+ Sbjct: 421 NEEKTKLQFLDPHSSEFSVTRNYLEWLTSV---PWGLTSPENRRLSH-------AKKALD 470 Query: 76 EEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMQLV 130 E YGM+D E+I+ ++ +IL GP G GK+S+A+ + + + Sbjct: 471 EGHYGMKDVKERIMEFIAVNLLRKSVGGKILCFHGPPGVGKTSIAKSIANALNRE 525 >UniRef50_Q188N1 Putative arginine utilization sigma-54 dependent regulatory protein n=9 Tax=Clostridium difficile RepID=Q188N1_CLOD6 Length = 466 Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 10/119 (8%) Query: 244 AYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHS 303 A G +AN+G + E+ PI + LL QEG G +P + I+A + Sbjct: 229 AIDRPGLFEQANKGTLLLDEINSMPIMLQAKLLRVLQEGYVRRVGGTKDIPIDVRIIATT 288 Query: 304 NESEWVTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKI--------YEKLLNHSELT 352 NES V +K + R+ I +K+P E+I + Y K LN + Sbjct: 289 NESPKVILNEHKMRKDLYYRLNIIHIKIPPLRDRKEDIPLLCKKFISKYNKKLNKKVVG 347 >UniRef50_B7H394 Nitrogen assimilation regulatory protein n=11 Tax=Acinetobacter RepID=B7H394_ACIB3 Length = 423 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 28/192 (14%), Positives = 71/192 (36%), Gaps = 8/192 (4%) Query: 246 GYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNE 305 + G RA G + E+ + P+++ LL + G + G + N I+ +++ Sbjct: 205 DHKGVFERAAGGTLFLDEIAEIPLELQAKLLRVLETGEFTPVGGEKPIQANVRIITATHK 264 Query: 306 SEWVTFRNNKNNEAFLDRVYIVKV--PYCLRISEEI-----KIYEKLLNHSELTHAPCAP 358 + + + L R+ ++ + P +I +I ++ + Sbjct: 265 ALREEAKAGRFRHDLLYRLRVIPIFIPPLRERKVDIPLIVDQILKESSTQLDTMPRHVNQ 324 Query: 359 GTLETLSRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNG 418 ++ L + ++E +N+ +Y+ + + +G+ + + DY + E Sbjct: 325 KAMQVLLNYDWPGNVRELKNTLLYA-LTMANGKDEIEVEDLPNELLNAEDYVKLPETNTE 383 Query: 419 LSTRFAFKILSR 430 LS L + Sbjct: 384 LSPENVQAALEK 395 >UniRef50_O44952 Lon protease homolog, mitochondrial n=2 Tax=Caenorhabditis RepID=LONM_CAEEL Length = 971 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 10/115 (8%) Query: 16 DEEFTLQEFLTTCRQDRSAYANAAERLLMAIGEPVMVDTAQEPRLSRLFSNRVIARYPAF 75 +EE T +FL + S N E L P + + + RLS +A+ Sbjct: 428 NEEKTKLQFLDPHSSEFSVTRNYLEWLTSV---PWGLTSPENRRLS-------VAKKALD 477 Query: 76 EEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMQLV 130 E YGM+D E+I+ ++ +IL GP G GK+S+A+ + + + Sbjct: 478 EGHYGMKDVKERIMEFIAVNLLRKSIGGKILCFHGPPGVGKTSIAKSIATALNRE 532 >UniRef50_C6PP25 Proprionate catabolism activator, Fis family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PP25_9CLOT Length = 620 Score = 44.4 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSN---- 304 G A+ G + E+ + PI+ LL QE +P + I+A +N Sbjct: 409 GLFTEAHGGTIFLDEIGELPIEFQARLLRVIQEREVRPLGSNKVIPIDVRIIAAANKDLL 468 Query: 305 -ESEWVTFRNNKNNEAFLDRVYIVKVPYCLRISEEIKI 341 E E FR++ + + ++VP + E+I I Sbjct: 469 KEIEKGNFRSD---LYYRLNILSMRVPTLMERREDIGI 503 >UniRef50_UPI000180C54F PREDICTED: similar to Lon n=1 Tax=Ciona intestinalis RepID=UPI000180C54F Length = 990 Score = 44.4 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 42/122 (34%), Gaps = 10/122 (8%) Query: 9 QRYEAAKDEEFTLQEFLTTCRQDRSAYANAAERLLMAIGEPVMVDTAQEPRLSRLFSNRV 68 Q + DEE FL + + N + L D + + N Sbjct: 471 QHIQEVIDEELNKLGFLDNHSSEFNVTRNYLDWLTSIPWGKSSEDNVDIKKAKEILEN-- 528 Query: 69 IARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMQ 128 + +GM+D +I+ ++ + +IL GP G GK+S+A + + Sbjct: 529 --------DHFGMDDVKNRILEFIAVSILRSHTHGKILCFHGPPGVGKTSIARSIARALN 580 Query: 129 LV 130 Sbjct: 581 RE 582 >UniRef50_D2RDR4 ABC transporter related protein n=4 Tax=Archaea RepID=D2RDR4_ARCPR Length = 246 Score = 44.4 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 70/193 (36%), Gaps = 15/193 (7%) Query: 59 RLSRLFSNRVIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKK-QILYLLGPVGGGKS 117 R+S+ F + RY FEE V + KK +I ++GP G GKS Sbjct: 6 RVSKKFKLPIEKRYTLFEEIVAFIRGKRDFVEFWALKDVTFNVKKGEIFGIMGPNGSGKS 65 Query: 118 SLAERLKSLMQLVPIYVLSA-NGERSPVNDHPFCLFNPQEDAQILEKEYGIPRRYLGTIM 176 +L + + ++ P G+ +P+ + FNP+ A+ YG+ + Sbjct: 66 TLLKIIAGVL--YPDSGKVEVRGKVTPILELGVG-FNPELTAKENVYVYGVIMGLKKEEV 122 Query: 177 SPWAAK--RLHEFGGDITKFRVVKVWPSILQQIAIAKTEPGDENNQ--DISALVGKVDIR 232 + R E ++ + ++A A + D VG ++ + Sbjct: 123 KKKCDEIFRFAEL-ERFKNMKLKNFSSGMYARLAFATAIATEPEILLIDEVLAVGDINFQ 181 Query: 233 -----KLEHYAQN 240 K++ +N Sbjct: 182 RKCIEKIKELNEN 194 >UniRef50_B2A1V9 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A1V9_NATTJ Length = 585 Score = 44.0 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 2/94 (2%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G AN G + E+ P + LL A QE + + I+A +N + Sbjct: 348 GKFELANGGTIFLDEIGDMPFDMQVKLLRALQEREVQRIGSERVIDLDVRIIASTNRNLE 407 Query: 309 VTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIK 340 +K E R+ + + VP + ++++ Sbjct: 408 QLIAQDKFREDLYYRLNVFNINVPPLREMKDDLE 441 >UniRef50_Q7MCP4 Sigma-54 dependent transcriptional regulator n=48 Tax=Vibrionales RepID=Q7MCP4_VIBVY Length = 610 Score = 43.6 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 24/147 (16%), Positives = 56/147 (38%), Gaps = 12/147 (8%) Query: 246 GYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNE 305 GY G + +A++GI+ E+ P++ LL Q+ + + I+A +++ Sbjct: 385 GYQGKIRQADKGILFLDEIADLPLEAQSRLLHVLQDNTVLPIGSNQTVQVDTQIIAATHK 444 Query: 306 -----SEWVTFRNNKNNEAFLDRVY--IVKVPYCLRISEEIKIYEKLLNHSELTHAPCAP 358 + FR + R+ I+++P ++ E + H P Sbjct: 445 DLDQLVQLGQFRQD-----LYYRLNGLIIELPRFAERDDKRAFIEHIHRRYAQDHQEICP 499 Query: 359 GTLETLSRFSILSRLKEPENSSIYSKM 385 + L ++ L+E ++ + + Sbjct: 500 HLMALLLHYTWPGNLRELDSLLKVATL 526 >UniRef50_P36776 Lon protease homolog, mitochondrial n=33 Tax=Coelomata RepID=LONM_HUMAN Length = 959 Score = 43.6 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 29/55 (52%) Query: 76 EEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMQLV 130 E+ YGMED ++I+ ++ + + +IL GP G GK+S+A + + Sbjct: 489 EDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIARSIARALNRE 543 >UniRef50_B0JWY8 Putative uncharacterized protein n=1 Tax=Microcystis aeruginosa NIES-843 RepID=B0JWY8_MICAN Length = 1793 Score = 43.6 bits (101), Expect = 0.024, Method: Composition-based stats. Identities = 64/423 (15%), Positives = 131/423 (30%), Gaps = 71/423 (16%) Query: 80 GMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMQLVPIYVLSANG 139 G + +E+I+ L Q K++ +LGP G GK+S L++ + + Sbjct: 529 GRQQDVEEIIRRLSPRNQ-----KKLTIVLGPSGVGKTS---MLEAGLVPQLRQEIFEGL 580 Query: 140 ERSPVNDHPFCLFNPQEDAQILEKEYGIPRRYLGTIMSPWAAKRLHEFGGDITKFRVVKV 199 + P+ L ++ + +++E R+ L + + Sbjct: 581 KIMPLF---LRLSKTRDWREEIQQELEKERKLLN----------------------IHAL 615 Query: 200 WPSILQQIAIAKTEPGDE-----------NNQDISALVGK--VDIRKLEHYAQNDPDAYG 246 + + AIA D +Q + L+ D + Q + Sbjct: 616 VHAESENTAIATAIESDPEALMIERLKSQQDQVFTVLILDQFEDFFFICKNPQERTRFFD 675 Query: 247 YSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGIS-ALPFN-GIILAHSN 304 + GI + + LH LL E + + +L++ N Sbjct: 676 FLKQCF----GISNVLIVISLREDYLHYLLEL--EKYIQDNQQSERTTDADYQDVLSYKN 729 Query: 305 ESEWVTFRNNKNNEAFLDRVYIVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLET- 363 F K E D + E + EKL++ P L+ Sbjct: 730 RYPLHNFTKEKAKELIRDLTS------NSQFKLEDNLIEKLVDDLAGNTEQVRPIELQIV 783 Query: 364 --------LSRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEG 415 +S + +L E ENS +S ++ Y + +K K K + Y DE Sbjct: 784 GAQLQEEEISSLAEYIKLAEGENSPKHSLIKKYLNDVVKACGEKNKEIADLVLYLLTDE- 842 Query: 416 MNGLSTRFAFKILSRVFNFDHVEVAANPVHLFYVLEQQIEREQFPQEQAERYLEFLKGYL 475 + K + + +F + + ++ ++Q + ++L + Sbjct: 843 -DDKRPLKTLKDFRETIEDNDDIRLILVLDIFVQSKLVVVYKETSEKQYQLLHDYLSRLI 901 Query: 476 IPK 478 + Sbjct: 902 REQ 904 >UniRef50_B3KXS5 Lon protease homolog n=22 Tax=cellular organisms RepID=B3KXS5_HUMAN Length = 923 Score = 43.6 bits (101), Expect = 0.024, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 29/55 (52%) Query: 76 EEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMQLV 130 E+ YGMED ++I+ ++ + + +IL GP G GK+S+A + + Sbjct: 453 EDHYGMEDVKKRILEFIAVSQLRGSTQGKILCFYGPPGVGKTSIARSIARALNRE 507 >UniRef50_C3YBR1 Lon protease homolog n=2 Tax=Eumetazoa RepID=C3YBR1_BRAFL Length = 997 Score = 43.6 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 16/118 (13%) Query: 16 DEEFTLQEFLTTCRQDRSAYANAAERLL-MAIG--EPVMVDTAQEPRLSRLFSNRVIARY 72 DEE FL + + N + L M G +D A+ + Sbjct: 491 DEELNKLSFLDPHSSEFNVTRNYLDWLTSMPWGKYSEENLDLARARAVLE---------- 540 Query: 73 PAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMQLV 130 E+ YGM+D +I+ ++ + + +IL GP G GK+S+A + + Sbjct: 541 ---EDHYGMDDVKNRILEFIAVSQLRGSVQGKILCFYGPPGVGKTSIARSIARALSRE 595 >UniRef50_Q11Y64 Two-component response regulator for zraP n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11Y64_CYTH3 Length = 436 Score = 42.8 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 4/119 (3%) Query: 222 ISALVGKVDIRKLEHYAQNDPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQE 281 L G ++ Y G L AN G + E+ + LL QE Sbjct: 192 SEELFGSEFFGHMK--GSFTGAVYDKPGLLESANGGTLFLDELGNLTYENQIKLLRVLQE 249 Query: 282 GNYNGTEGISALPFNGIILAHSNESEWVTFRNNKNNEAFLDRVY--IVKVPYCLRISEE 338 + + ++A +NE ++ + K E R+ + VP E+ Sbjct: 250 KKVKRIGSNKEIDLDIRLIAATNEEIVLSVQKEKFREDLYHRLNEFKIHVPALRERPED 308 >UniRef50_A6CFV8 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CFV8_9PLAN Length = 321 Score = 42.8 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 38/114 (33%), Gaps = 2/114 (1%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G + AN+G + E+ P + LL QE + I+A +N Sbjct: 127 GLVMHANKGTLFLDEIGDMPPEAQQCLLRMLQEKRIRPVGSQVEADIDVRIVAATNVLLD 186 Query: 309 VTFRNNKNNEAFLDRV--YIVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGT 360 R+ K E R+ V VP + E++ + H P T Sbjct: 187 EAVRDGKFREDLFYRLDVIRVNVPPLRQRPEDVFLLFGHFTKRLAKHYGLEPPT 240 >UniRef50_A9VKT7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=19 Tax=Bacillus RepID=A9VKT7_BACWK Length = 709 Score = 42.8 bits (99), Expect = 0.042, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 6/127 (4%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 G RA+QGI+ E+ + P+ + LL QE + + N I+A +N+S Sbjct: 474 EGYFKRADQGILFLDEIGEMPLHLQVKLLRVLQEQEVIPIGSTTPMKINVQIIAATNKSL 533 Query: 308 WVTFRNNKNNEAFLDRVYIV--KVPYCLRISEEIKI----YEKLLNHSELTHAPCAPGTL 361 + E R+ ++ +VP E++ + + + LN + P L Sbjct: 534 EKMVESGTFREDLFYRLNVIPLRVPSLRERMEDVPVLAFHFLQQLNEKYNKNYHLTPDAL 593 Query: 362 ETLSRFS 368 L +S Sbjct: 594 NLLEFYS 600 >UniRef50_Q026M7 Transcriptional regulator, NifA subfamily, Fis Family n=4 Tax=Bacteria RepID=Q026M7_SOLUE Length = 706 Score = 42.4 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 65/191 (34%), Gaps = 10/191 (5%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G A+ G + E+ + P+++ LL QE + + + ++A +N + Sbjct: 475 GRFELAHHGTVFLDEIGEIPLELQPKLLRVLQEREFERLGSSRTMRTDARLIAATNR-DL 533 Query: 309 VTFRNNKNNEA-FLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLS 365 T ++N A R+ + V+VP E+I + + A T+ T + Sbjct: 534 ATMVEDRNFRADLFYRLNVFPVQVPALRDRPEDIPLLVRHFVQQFARRMGKAVDTIPTET 593 Query: 366 RFSILSRLKEPENSSIYSKMR-----VYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLS 420 ++L R P N + + G LK + A E + Sbjct: 594 M-NVLVRYHWPGNIRELQNLLERAVILSAGPVLKVPLNDLQLQAPAPTTARKTETLESAE 652 Query: 421 TRFAFKILSRV 431 R + L Sbjct: 653 RRHILEALEAA 663 >UniRef50_A6VFF7 Glycine betaine/L-proline ABC transporter, ATPase subunit n=6 Tax=Methanococcus RepID=A6VFF7_METM7 Length = 389 Score = 42.4 bits (98), Expect = 0.055, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 49/117 (41%), Gaps = 6/117 (5%) Query: 60 LSRLFSNRVIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKK-QILYLLGPVGGGKSS 118 L ++F + YP +E + ++ E+ + + K+ +I ++G G GKS+ Sbjct: 11 LYKIFGKKPEKAYPLIKEGFSRKEIKEKTKQVVGLKNINFDVKRGEIFVIMGLSGSGKST 70 Query: 119 LAERLKSLMQLVPIY---VLSANGERSPVNDHPFCLFNPQEDAQILEKEYGIPRRYL 172 L + L++ P Y VL + S + + + + +K +P R + Sbjct: 71 LIRCINRLIK--PTYGKIVLENGVDISKMREKDLLEIRRKYFGMVFQKFGLLPNRSV 125 >UniRef50_B1T833 Putative sigma54 specific transcriptional regulator n=2 Tax=Burkholderia ambifaria RepID=B1T833_9BURK Length = 320 Score = 42.4 bits (98), Expect = 0.061, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 40/114 (35%), Gaps = 5/114 (4%) Query: 245 YGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSN 304 + + G A+ G + E+ + P V LL ++ + P + I+A SN Sbjct: 96 HAFPGRFVEADGGTLFLDEVSEMPPAVQAKLLRLLEDHTVMPVGSLRRRPVDVRIVAASN 155 Query: 305 ESEWVTFRNNKNNEA---FLDRVYIVKVPYCLRISEEIK-IYEKLLNHSELTHA 354 E + A + V +++P E+I I + + A Sbjct: 156 E-RLEDLVAERRFRADLFYRLNVARIEIPPLRERPEDIASIVDHFVAEHNQRRA 208 >UniRef50_O83536 ATP-dependent protease La n=4 Tax=Treponema RepID=LON_TREPA Length = 881 Score = 42.0 bits (97), Expect = 0.068, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 30/53 (56%) Query: 75 FEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 E+ YG+E+ E+IV YL + K I+ L+GP G GK+S+ + + + Sbjct: 405 DEDHYGLENVKERIVEYLAVRKLRADTKGSIILLVGPPGVGKTSVGKSIARAI 457 >UniRef50_B7DTW4 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Alicyclobacillus acidocaldarius LAA1 RepID=B7DTW4_9BACL Length = 668 Score = 42.0 bits (97), Expect = 0.068, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 49/131 (37%), Gaps = 6/131 (4%) Query: 241 DPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIIL 300 P G G AN G + E+ P+++ LL QE ++ + I+ Sbjct: 428 HPR--GKKGKFEEANGGTLFLDEIGDMPLELQVYLLRVLQEKKITRLGSTTSEAVDVRII 485 Query: 301 AHSNESEWVTFRNNKNNEAFLDRVYIVKV---PYCLRISEEIKIYEKLLNHSELTH-APC 356 A +N++ N + R+ +V++ P R+++ I + L+ H Sbjct: 486 AATNQNLAQRVANGEFRLDLFYRLNVVEIELPPLRDRLADVPSIAQHFLSLFAQKHDKSV 545 Query: 357 APGTLETLSRF 367 E L+ F Sbjct: 546 ERFDPEVLNLF 556 >UniRef50_Q2YPX3 ATP-dependent protease La n=377 Tax=Bacteria RepID=LON_BRUA2 Length = 812 Score = 42.0 bits (97), Expect = 0.074, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 35/72 (48%) Query: 59 RLSRLFSNRVIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSS 118 + S++ + A+ E +G+ E+IV YL A+ + K IL L+GP G GK+S Sbjct: 316 KKSKVKQDLNFAQEVLDAEHFGLGKVKERIVEYLAVQARSTKIKGPILCLVGPPGVGKTS 375 Query: 119 LAERLKSLMQLV 130 LA + Sbjct: 376 LARSIAKATGRE 387 >UniRef50_O51558 ATP-dependent protease La homolog n=25 Tax=Borrelia RepID=LON2_BORBU Length = 813 Score = 42.0 bits (97), Expect = 0.077, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 31/59 (52%) Query: 72 YPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMQLV 130 + YGM++A E+I+++L + K IL L+GP G GK+SL E + + Sbjct: 331 FILRNSHYGMDEAKEKIINFLAVYQINSKVKAPILCLVGPPGIGKTSLVESIARSLSRE 389 >UniRef50_B5Y8Q8 ATP-dependent protease La n=5 Tax=root RepID=B5Y8Q8_COPPD Length = 768 Score = 41.7 bits (96), Expect = 0.092, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 30/51 (58%) Query: 79 YGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMQL 129 YG++DA E+IV ++ K IL L+GP G GK+SLA+ + + + Sbjct: 318 YGLDDAKERIVEFIATKKLSSNPKAPILCLVGPPGVGKTSLAKAIATALNR 368 >UniRef50_Q9ZD92 ATP-dependent protease La n=15 Tax=Rickettsieae RepID=LON_RICPR Length = 784 Score = 41.7 bits (96), Expect = 0.092, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 28/51 (54%) Query: 79 YGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMQL 129 +G+E E+I+ YL + + + IL L+GP G GK+SL + + M Sbjct: 325 FGLEKVKERIIEYLAVLQRSSKIRGPILCLIGPPGVGKTSLVKSIAEGMGR 375 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0ACY5 Uncharacterized protein yeaG n=433 Tax=Proteobac... 634 e-180 UniRef50_Q3J884 PrkA serine kinase n=28 Tax=Bacteria RepID=Q3J88... 535 e-150 UniRef50_D2R2R0 Putative serine protein kinase, PrkA n=3 Tax=Bac... 521 e-146 UniRef50_A9WHT0 PrkA AAA domain protein n=23 Tax=Bacteria RepID=... 513 e-143 UniRef50_P39134 Protein prkA n=98 Tax=Bacteria RepID=PRKA_BACSU 504 e-141 UniRef50_UPI00016C05A7 Serine protein kinase (prkA protein), P-l... 496 e-138 UniRef50_A4BNQ6 PrkA protein n=2 Tax=cellular organisms RepID=A4... 463 e-129 UniRef50_A0MN77 Serine kinase n=1 Tax=Thermus phage phiYS40 RepI... 453 e-126 UniRef50_Q18FZ9 Predicted serine protein kinase n=11 Tax=Halobac... 443 e-123 UniRef50_Q08Z64 Serine protein kinase, putative n=5 Tax=Cystobac... 412 e-113 UniRef50_D0LUZ5 Putative serine protein kinase, PrkA n=1 Tax=Hal... 398 e-109 UniRef50_A9GWJ6 Protein kinase n=1 Tax=Sorangium cellulosum 'So ... 390 e-106 UniRef50_C0QJY5 PrkA2 n=11 Tax=Deltaproteobacteria RepID=C0QJY5_... 358 5e-97 UniRef50_A6G891 Putative serine protein kinase, PrkA n=1 Tax=Ple... 352 3e-95 UniRef50_C0QJY2 Sensory box histidine kinase/response regulator ... 341 6e-92 UniRef50_Q3IPY4 Predicted serine protein kinase 2 n=11 Tax=Halob... 334 7e-90 UniRef50_B8FIY2 Putative serine protein kinase, PrkA n=10 Tax=De... 332 2e-89 UniRef50_Q1ILJ3 Magnesium protoporphyrin chelatase, putative n=9... 247 9e-64 UniRef50_D2EEA4 Putative serine protein kinase, PrkA n=1 Tax=Can... 238 4e-61 UniRef50_Q7UYY5 Probable magnesium protoporphyrin chelatase n=4 ... 225 3e-57 UniRef50_A8TM27 Putative Ser protein kinase n=1 Tax=alpha proteo... 196 3e-48 UniRef50_D2S953 Putative magnesium chelatase n=1 Tax=Geodermatop... 188 4e-46 UniRef50_Q2J637 Magnesium chelatase, ChlI subunit n=45 Tax=Actin... 183 2e-44 UniRef50_Q8TXP4 Predicted ATP-dependent protease n=1 Tax=Methano... 180 1e-43 UniRef50_D1CAP1 Mg-chelatase subunit ChlI-like protein n=3 Tax=B... 175 3e-42 UniRef50_C8SCW8 ATPase associated with various cellular activiti... 170 1e-40 UniRef50_B9L3Z1 Magnesium chelatase subunit ChlI n=2 Tax=Bacteri... 170 2e-40 UniRef50_D0L6A4 Mg-chelatase subunit ChlI-like protein n=20 Tax=... 168 5e-40 UniRef50_A0RXY9 Mg-chelatase subunit n=1 Tax=Cenarchaeum symbios... 165 5e-39 UniRef50_Q8TYU9 Mg-chelatase subunit ChlI and Chld (MoxR-like AT... 163 3e-38 UniRef50_Q74N18 NEQ401 n=1 Tax=Nanoarchaeum equitans RepID=Q74N1... 129 4e-28 UniRef50_D2EEA6 Putative serine protein kinase, PrkA n=1 Tax=Can... 122 5e-26 UniRef50_C0GH19 Sigma54 specific transcriptional regulator, Fis ... 116 4e-24 UniRef50_A8MC50 ATPase associated with various cellular activiti... 98 7e-19 UniRef50_C9XJV7 Putative sigma-54-dependent transcriptional regu... 96 6e-18 Sequences not found previously or not previously below threshold: UniRef50_D2QXC4 Magnesium protoporphyrin chelatase, putative n=1... 190 2e-46 UniRef50_Q2S060 Magnesium chelatase, subunit ChlI family n=6 Tax... 152 3e-35 UniRef50_C1ZLH7 Mg-chelatase subunit ChlI n=1 Tax=Planctomyces l... 149 3e-34 UniRef50_B3QXN8 Magnesium chelatase, subunit ChlI family n=11 Ta... 148 7e-34 UniRef50_D2RGD6 ATPase associated with various cellular activiti... 143 2e-32 UniRef50_A4CLB9 Magnesium chelatase, subunit ChlI family protein... 141 8e-32 UniRef50_O26878 Putative protease La homolog type 1 n=30 Tax=Arc... 106 3e-21 UniRef50_A5UNJ6 ATP-dependent protease La, LonB n=2 Tax=Methanob... 100 1e-19 UniRef50_D2EGD6 Peptidase S16, Lon protease n=2 Tax=Euryarchaeot... 96 3e-18 UniRef50_D2RXS1 Sigma 54 interacting domain protein n=7 Tax=Eury... 93 3e-17 UniRef50_A6UPI7 Peptidase S16, Lon-like protease n=1 Tax=Methano... 91 9e-17 UniRef50_UPI0001C41E3C ATP-dependent protease S16 family n=1 Tax... 91 1e-16 UniRef50_B8FXK8 Sigma54 specific transcriptional regulator, Fis ... 91 2e-16 UniRef50_Q58812 Putative protease La homolog n=5 Tax=Methanocald... 90 2e-16 UniRef50_Q01QL4 Sigma54 specific transcriptional regulator, Fis ... 88 9e-16 UniRef50_C6NWM8 Two component, sigma54 specific, transcriptional... 87 2e-15 UniRef50_A0LKL9 Sigma-54 factor, interaction domain-containing p... 86 6e-15 UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional... 85 8e-15 UniRef50_C9KLP4 Nitrogen regulation protein NR n=1 Tax=Mitsuokel... 85 9e-15 UniRef50_Q1ZUC7 Formate hydrogenlyase transcriptional activator ... 85 1e-14 UniRef50_C7DGV1 Peptidase S16, Lon-like protease n=1 Tax=Candida... 85 1e-14 UniRef50_O58221 Pho lon intein n=9 Tax=Archaea RepID=LONH_PYRHO 84 2e-14 UniRef50_A0B2I0 GAF modulated sigma54 specific transcriptional r... 83 3e-14 UniRef50_A0LDW4 Nitrogen metabolism transcriptional regulator, N... 83 3e-14 UniRef50_Q5WE88 Transcriptional activator of the acetoin dehydro... 83 3e-14 UniRef50_A5I5X3 Sigma-54 dependent transcriptional regulator n=1... 83 4e-14 UniRef50_Q9UYC6 Pab lon intein n=1 Tax=Pyrococcus abyssi RepID=L... 83 4e-14 UniRef50_Q74NJ8 NEQ349 n=1 Tax=Nanoarchaeum equitans RepID=Q74NJ... 83 4e-14 UniRef50_B1JEG3 Two component, sigma54 specific, transcriptional... 83 4e-14 UniRef50_C6DXM3 Sigma-54 interaction domain family protein n=3 T... 83 5e-14 UniRef50_Q1D5E1 Sigma-54 dependent transcriptional regulator, Fi... 82 6e-14 UniRef50_A6TX18 Sigma54 specific transcriptional regulator, Fis ... 82 6e-14 UniRef50_Q2RXL4 Transcriptional regulator, NifA subfamily, Fis f... 82 7e-14 UniRef50_A6TPV3 Sigma54 specific transcriptional regulator, Fis ... 82 7e-14 UniRef50_Q3ABV5 Sigma-54 dependent transcriptional regulator n=3... 82 7e-14 UniRef50_B6YVP3 Magnesium chelatase, ChlI subunit n=2 Tax=Euryar... 82 7e-14 UniRef50_B5YI42 AdnA n=3 Tax=Bacteria RepID=B5YI42_THEYD 82 8e-14 UniRef50_C7PLV9 Sigma54 specific transcriptional regulator, Fis ... 82 8e-14 UniRef50_A9VKT7 PAS modulated sigma54 specific transcriptional r... 81 9e-14 UniRef50_C9RXL1 GAF modulated sigma54 specific transcriptional r... 81 9e-14 UniRef50_O26978 Putative protease La homolog type 2 n=7 Tax=Eury... 81 1e-13 UniRef50_C9XPH0 Putative sigma-54-dependent transcriptional regu... 81 1e-13 UniRef50_A6T4B6 Sigma-54 dependent response regulator n=18 Tax=P... 81 1e-13 UniRef50_D2L943 Two component, sigma54 specific, transcriptional... 81 1e-13 UniRef50_Q67KD0 Sigma-54-dependent transcriptional regulator n=1... 81 1e-13 UniRef50_Q89NZ8 Transcriptional regulatory protein n=1 Tax=Brady... 81 2e-13 UniRef50_B2A1V9 PAS modulated sigma54 specific transcriptional r... 81 2e-13 UniRef50_C6PP25 Proprionate catabolism activator, Fis family n=1... 81 2e-13 UniRef50_A6UCY3 Two component, sigma54 specific, transcriptional... 81 2e-13 UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC ... 80 2e-13 UniRef50_C4KCC3 Two component, sigma54 specific, transcriptional... 80 2e-13 UniRef50_A9HYL1 Propionate catabolism operon regulator n=3 Tax=B... 80 2e-13 UniRef50_Q1PVM8 Similar to sigma-54 dependent transcriptional re... 80 2e-13 UniRef50_D1RLY9 Transcriptional regulator FleQ n=1 Tax=Legionell... 80 2e-13 UniRef50_C9XRA6 Probable sigma54-dependent transcriptional regul... 80 3e-13 UniRef50_UPI00016C4DD7 sigma-54 dependent transcriptional regula... 80 3e-13 UniRef50_B8DJ26 Two component, sigma54 specific, transcriptional... 80 3e-13 UniRef50_C0QE85 FhlA n=1 Tax=Desulfobacterium autotrophicum HRM2... 80 4e-13 UniRef50_Q216X1 Sigma-54 factor, interaction region n=2 Tax=Rhiz... 80 4e-13 UniRef50_B8DQD3 Two component, sigma54 specific, transcriptional... 80 4e-13 UniRef50_C1ZHW1 Response regulator with CheY-like receiver, AAA-... 80 4e-13 UniRef50_Q1JWW3 GAF modulated sigma54 specific transcriptional r... 79 4e-13 UniRef50_Q2RH79 Sigma54 specific transcriptional regulator with ... 79 4e-13 UniRef50_C0ZGM5 Probable transcriptional regulator n=1 Tax=Brevi... 79 5e-13 UniRef50_B0TAR7 Sigma-54-dependent transcriptional activator (Ni... 79 5e-13 UniRef50_B4D0Z8 Two component, sigma54 specific, transcriptional... 79 5e-13 UniRef50_C9KM56 Sigma-54 dependent transcriptional regulator/sen... 79 5e-13 UniRef50_C0Z7K7 Putative transcriptional regulator protein n=1 T... 79 5e-13 UniRef50_D2RMP1 Sigma54 specific transcriptional regulator, Fis ... 79 5e-13 UniRef50_C1MAF5 Signal-transduction and transcriptional-control ... 79 6e-13 UniRef50_D1TMK5 Transcriptional regulator NifA n=1 Tax=Burkholde... 79 6e-13 UniRef50_D0ZE77 Putative uncharacterized protein n=1 Tax=Edwards... 79 6e-13 UniRef50_P71229 Hydrogenase-4 transcriptional activator n=45 Tax... 79 6e-13 UniRef50_A4YIH6 Protoporphyrin IX magnesium-chelatase n=1 Tax=Me... 79 6e-13 UniRef50_Q026M7 Transcriptional regulator, NifA subfamily, Fis F... 79 6e-13 UniRef50_B0K4W6 GAF modulated sigma54 specific transcriptional r... 79 7e-13 UniRef50_A1HLS8 Putative PAS/PAC sensor protein n=1 Tax=Thermosi... 79 7e-13 UniRef50_Q022Z3 Transcriptional regulator, Fis family n=1 Tax=Ca... 78 7e-13 UniRef50_B9M8I2 Sigma54 specific transcriptional regulator, Fis ... 78 7e-13 UniRef50_A1K1I4 Sigma-54 dependent response regulator n=1 Tax=Az... 78 8e-13 UniRef50_B8FV05 Sigma54 specific transcriptional regulator, Fis ... 78 8e-13 UniRef50_A0KL56 Formate hydrogenlyase transcriptional activator ... 78 9e-13 UniRef50_C7PQF6 Transcriptional regulator, NifA subfamily, Fis F... 78 9e-13 UniRef50_Q24RP4 Putative uncharacterized protein n=1 Tax=Desulfi... 78 1e-12 UniRef50_B8F9K7 Two component, sigma54 specific, transcriptional... 78 1e-12 UniRef50_A9FB29 Sigma-54 dependent DNA-binding response regulato... 78 1e-12 UniRef50_B6FY43 Putative uncharacterized protein n=1 Tax=Clostri... 78 1e-12 UniRef50_B5UK27 Sigma-54 dependent transcriptional regulator n=1... 78 1e-12 UniRef50_D0LSM1 Transcriptional regulator, NifA subfamily, Fis F... 78 1e-12 UniRef50_B0K3D1 Sigma-54 factor, interaction domain-containing p... 78 1e-12 UniRef50_C6NXT3 Sigma-54 dependent transcriptional regulator n=1... 78 1e-12 UniRef50_A3EU11 Putative sigma54 specific transcriptional regula... 78 2e-12 UniRef50_Q188N1 Putative arginine utilization sigma-54 dependent... 77 2e-12 UniRef50_A6TL57 Sigma54 specific transcriptional regulator, Fis ... 77 2e-12 UniRef50_A9GDL4 Sigma-54 dependent transcriptional regulator n=2... 77 2e-12 UniRef50_B8FQQ1 Sigma54 specific transcriptional regulator, Fis ... 77 2e-12 UniRef50_Q893M0 Putative sigma-54 interacting protein n=1 Tax=Cl... 77 2e-12 UniRef50_C0QJP8 Sigma-54 dependent DNA-binding response regulato... 77 2e-12 UniRef50_C0ZAD0 Putative transcriptional regulator n=1 Tax=Brevi... 77 2e-12 UniRef50_B8FTG8 PAS modulated sigma54 specific transcriptional r... 77 2e-12 UniRef50_UPI00016A7B7E two component, sigma54 specific, transcri... 77 2e-12 UniRef50_Q312T1 Putative transcriptional regulator, Fis family n... 77 2e-12 UniRef50_A9F3C1 Family membership n=1 Tax=Sorangium cellulosum '... 77 2e-12 UniRef50_C0Z9N5 Probable transcriptional regulator n=1 Tax=Brevi... 77 2e-12 UniRef50_A6CKR1 Putative uncharacterized protein n=1 Tax=Bacillu... 77 2e-12 UniRef50_A0N0V6 Putative regulatory protein n=2 Tax=Azoarcus ana... 77 2e-12 UniRef50_Q1N5U9 Sigma-54 dependent transcriptional regulator/sen... 77 2e-12 UniRef50_C6WXM6 GAF modulated sigma54 specific transcriptional r... 77 2e-12 UniRef50_C5EQI0 Sigma54 specific transcriptional regulator n=1 T... 77 3e-12 UniRef50_A8ZZQ7 Sigma-54 factor interaction domain-containing pr... 77 3e-12 UniRef50_B2A7X5 Putative sigma54 specific transcriptional regula... 76 3e-12 UniRef50_C1ZA32 Transcriptional regulator containing GAF, AAA-ty... 76 3e-12 UniRef50_A6TQQ2 Sigma54 specific transcriptional regulator, Fis ... 76 3e-12 UniRef50_C6HWP3 Sigma54 specific transcriptional regulator, Fis ... 76 3e-12 UniRef50_B8J209 Putative two component, sigma54 specific, transc... 76 3e-12 UniRef50_C5S946 Sigma54 specific transcriptional regulator, Fis ... 76 3e-12 UniRef50_P0AFB9 Nitrogen regulation protein NR(I) n=502 Tax=Bact... 76 3e-12 UniRef50_C6HYC9 Two component, sigma54 specific, transcriptional... 76 3e-12 UniRef50_Q7WZ29 MmoR n=1 Tax=Methylococcus capsulatus RepID=Q7WZ... 76 3e-12 UniRef50_B0K647 Sigma54 specific transcriptional regulator, Fis ... 76 3e-12 UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional... 76 3e-12 UniRef50_A4G2F7 AoxR regulatory protein n=1 Tax=Herminiimonas ar... 76 3e-12 UniRef50_A7HEU6 GAF modulated sigma54 specific transcriptional r... 76 3e-12 UniRef50_C1SGC3 Response regulator with CheY-like receiver, AAA-... 76 3e-12 UniRef50_Q2LXQ0 Response regulator with sigma 54 interaction dom... 76 3e-12 UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=C... 76 3e-12 UniRef50_C1F3N9 Sigma-54 dependent DNA-binding response regulato... 76 4e-12 UniRef50_A0KWT7 Response regulator receiver protein n=2 Tax=Gamm... 76 4e-12 UniRef50_Q30WV1 Transcriptional regulator n=1 Tax=Desulfovibrio ... 76 4e-12 UniRef50_B8DNW7 Two component, sigma54 specific, transcriptional... 76 4e-12 UniRef50_D0Z425 Formate hydrogenlyase transcriptional activator ... 76 4e-12 UniRef50_A1HLP6 Sigma54 specific transcriptional regulator, Fis ... 76 4e-12 UniRef50_C8W392 Two component, sigma54 specific, transcriptional... 76 4e-12 UniRef50_Q9KBP6 Transcriptional regulator (Sigma-L-dependent) n=... 76 4e-12 UniRef50_Q6ANF6 Related to transcriptional regulator n=1 Tax=Des... 76 4e-12 UniRef50_A9BWZ0 Two component, sigma54 specific, transcriptional... 76 4e-12 UniRef50_Q39SU6 Two component, sigma54 specific, transcriptional... 76 4e-12 UniRef50_A5D4G1 Response regulator n=8 Tax=Bacteria RepID=A5D4G1... 76 4e-12 UniRef50_A1VHV7 Sigma54 specific transcriptional regulator, Fis ... 76 4e-12 UniRef50_Q1ZGP7 Formate hydrogen-lyase transcriptional activator... 76 4e-12 UniRef50_Q1IQW5 Two component, sigma54 specific, transcriptional... 76 5e-12 UniRef50_Q1K388 Sigma54 specific transcriptional regulator, Fis ... 76 5e-12 UniRef50_B8FL05 Two component, sigma54 specific, transcriptional... 76 5e-12 UniRef50_B8FD65 Sigma54 specific transcriptional regulator, Fis ... 76 5e-12 UniRef50_A1VHZ7 Two component, sigma54 specific, transcriptional... 76 5e-12 UniRef50_P26047 Signal-transduction and transcriptional-control ... 76 5e-12 UniRef50_A6TVV8 Sigma54 specific transcriptional regulator, Fis ... 76 5e-12 UniRef50_Q1DD85 Sigma-54 dependent DNA-binding response regulato... 76 5e-12 UniRef50_A0LLZ0 Two component, sigma54 specific, transcriptional... 76 5e-12 UniRef50_Q12HA0 Sigma54 specific transcriptional regulator with ... 76 5e-12 UniRef50_B8IZ33 Two component, sigma54 specific, transcriptional... 76 5e-12 UniRef50_A5N2U4 Predicted signal transduction and transcriptiona... 76 5e-12 UniRef50_B3E4E8 Putative sigma54 specific transcriptional regula... 76 5e-12 UniRef50_D2L101 Two component, sigma54 specific, transcriptional... 76 5e-12 UniRef50_Q897M6 Transcriptional regulatory protein n=1 Tax=Clost... 76 6e-12 UniRef50_B8DQ72 Two component, sigma54 specific, transcriptional... 76 6e-12 UniRef50_B7H394 Nitrogen assimilation regulatory protein n=11 Ta... 76 6e-12 UniRef50_A0L4D6 Sigma54 specific transcriptional regulator, Fis ... 76 6e-12 UniRef50_P38022 Arginine utilization regulatory protein rocR n=8... 76 6e-12 UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional... 76 6e-12 UniRef50_C8WYU9 Two component, sigma54 specific, transcriptional... 75 6e-12 UniRef50_B4RA20 Sigma-54-dependent transcriptional regulator (Ac... 75 7e-12 UniRef50_A4JRG9 Two component, sigma54 specific, transcriptional... 75 7e-12 UniRef50_A9VII1 PAS modulated sigma54 specific transcriptional r... 75 7e-12 UniRef50_A6C332 Two component, sigma54 specific, transcriptional... 75 7e-12 UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator... 75 7e-12 UniRef50_A8ZZC1 Transcriptional regulator, NifA subfamily, Fis F... 75 8e-12 UniRef50_Q3AQY4 Transcriptional regulator, Fis family / DNA-bind... 75 8e-12 UniRef50_Q1D217 Sigma-54 dependent DNA-binding reponse regulator... 75 8e-12 UniRef50_D2QLL9 Transcriptional regulator, NifA subfamily, Fis F... 75 8e-12 UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional... 75 8e-12 UniRef50_Q3A356 Two component, sigma54 specific, transcriptional... 75 8e-12 UniRef50_UPI00016C44AF cetoacetate metabolism regulatory protein... 75 8e-12 UniRef50_Q47HA8 Helix-turn-helix, Fis-type n=4 Tax=cellular orga... 75 9e-12 UniRef50_O31551 Acetoin dehydrogenase operon transcriptional act... 75 9e-12 UniRef50_C3WC69 Sigma-54 dependent transcriptional regulator n=5... 75 9e-12 UniRef50_Q1NW39 Nif-specific regulatory protein n=2 Tax=Deltapro... 75 9e-12 UniRef50_C5EM87 Sigma54 specific transcriptional regulator n=1 T... 75 9e-12 UniRef50_Q30XH6 Putative transcriptional regulator, Fis family n... 75 9e-12 UniRef50_Q1IRB0 Two component, sigma54 specific, transcriptional... 75 9e-12 UniRef50_B9M8I7 PAS modulated sigma54 specific transcriptional r... 75 9e-12 UniRef50_Q485M5 Flagellar regulatory protein A n=19 Tax=Gammapro... 75 1e-11 UniRef50_A0LMY2 Two component, sigma54 specific, transcriptional... 75 1e-11 UniRef50_B4DAQ1 Transcriptional regulator, NifA subfamily, Fis F... 75 1e-11 UniRef50_B3QXG8 Sigma54 specific transcriptional regulator, Fis ... 75 1e-11 UniRef50_C0Z5U4 Probable transcriptional regulator n=1 Tax=Brevi... 75 1e-11 UniRef50_A5D2Z2 Transcriptional regulator n=1 Tax=Pelotomaculum ... 75 1e-11 UniRef50_A0L4D4 Two component, sigma54 specific, transcriptional... 75 1e-11 UniRef50_A6CEU3 Acetoacetate metabolism regulatory protein atoC ... 75 1e-11 UniRef50_Q12MS3 Sigma-54 factor, interaction region n=2 Tax=Alte... 75 1e-11 UniRef50_C1A7J8 Putative NtrC family two-component response regu... 75 1e-11 UniRef50_C1PFE6 GAF modulated sigma54 specific transcriptional r... 75 1e-11 UniRef50_Q0SR73 Sigma-54 dependent transcriptional regulator n=1... 75 1e-11 UniRef50_A1VA02 Sigma54 specific transcriptional regulator, Fis ... 75 1e-11 UniRef50_C4LCM0 Sigma54 specific transcriptional regulator, Fis ... 75 1e-11 UniRef50_B8DQY9 Transcriptional regulator, NifA subfamily, Fis F... 75 1e-11 UniRef50_A4CKT3 Transcriptional regulator, NifA subfamily, Fis F... 75 1e-11 UniRef50_B8DQH7 PAS modulated sigma54 specific transcriptional r... 75 1e-11 UniRef50_Q1JY50 Sigma54 specific transcriptional regulator, Fis ... 75 1e-11 UniRef50_B8FXH0 PAS modulated sigma54 specific transcriptional r... 75 1e-11 UniRef50_D0TB92 Two-component system response regulator n=1 Tax=... 75 1e-11 UniRef50_C6PSK3 Putative sigma54 specific transcriptional regula... 75 1e-11 UniRef50_C2X5C8 Carbamoyl-phosphate synthase, large subunit n=4 ... 75 1e-11 UniRef50_A6VS90 GAF modulated sigma54 specific transcriptional r... 75 1e-11 UniRef50_D2U436 Two-component system, NtrC family, nitrogen regu... 75 1e-11 UniRef50_A3ER00 Transcriptional regulator, NifA, Fis Family n=3 ... 75 1e-11 UniRef50_Q1Q1B9 Strong similarity to sigma 54 response regulator... 75 1e-11 UniRef50_D2MK88 Formate hydrogenlyase transcriptional activator ... 75 1e-11 UniRef50_C6QTT1 GAF modulated sigma54 specific transcriptional r... 75 1e-11 UniRef50_B8D1H9 Putative PAS/PAC sensor protein n=1 Tax=Halother... 75 1e-11 UniRef50_Q3A5A0 Two component, sigma54 specific, transcriptional... 75 1e-11 UniRef50_A6CFV8 Two component, sigma54 specific, transcriptional... 75 1e-11 UniRef50_B8J0D0 Sigma54 specific transcriptional regulator, Fis ... 75 1e-11 UniRef50_B2JEB5 Two component, sigma54 specific, transcriptional... 75 1e-11 UniRef50_C5DAI7 PAS modulated sigma54 specific transcriptional r... 74 1e-11 >UniRef50_P0ACY5 Uncharacterized protein yeaG n=433 Tax=Proteobacteria RepID=YEAG_ECO57 Length = 644 Score = 634 bits (1635), Expect = e-180, Method: Composition-based stats. Identities = 644/644 (100%), Positives = 644/644 (100%) Query: 1 MNIFDHYRQRYEAAKDEEFTLQEFLTTCRQDRSAYANAAERLLMAIGEPVMVDTAQEPRL 60 MNIFDHYRQRYEAAKDEEFTLQEFLTTCRQDRSAYANAAERLLMAIGEPVMVDTAQEPRL Sbjct: 1 MNIFDHYRQRYEAAKDEEFTLQEFLTTCRQDRSAYANAAERLLMAIGEPVMVDTAQEPRL 60 Query: 61 SRLFSNRVIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLA 120 SRLFSNRVIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLA Sbjct: 61 SRLFSNRVIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLA 120 Query: 121 ERLKSLMQLVPIYVLSANGERSPVNDHPFCLFNPQEDAQILEKEYGIPRRYLGTIMSPWA 180 ERLKSLMQLVPIYVLSANGERSPVNDHPFCLFNPQEDAQILEKEYGIPRRYLGTIMSPWA Sbjct: 121 ERLKSLMQLVPIYVLSANGERSPVNDHPFCLFNPQEDAQILEKEYGIPRRYLGTIMSPWA 180 Query: 181 AKRLHEFGGDITKFRVVKVWPSILQQIAIAKTEPGDENNQDISALVGKVDIRKLEHYAQN 240 AKRLHEFGGDITKFRVVKVWPSILQQIAIAKTEPGDENNQDISALVGKVDIRKLEHYAQN Sbjct: 181 AKRLHEFGGDITKFRVVKVWPSILQQIAIAKTEPGDENNQDISALVGKVDIRKLEHYAQN 240 Query: 241 DPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIIL 300 DPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIIL Sbjct: 241 DPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIIL 300 Query: 301 AHSNESEWVTFRNNKNNEAFLDRVYIVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGT 360 AHSNESEWVTFRNNKNNEAFLDRVYIVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGT Sbjct: 301 AHSNESEWVTFRNNKNNEAFLDRVYIVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGT 360 Query: 361 LETLSRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLS 420 LETLSRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLS Sbjct: 361 LETLSRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLS 420 Query: 421 TRFAFKILSRVFNFDHVEVAANPVHLFYVLEQQIEREQFPQEQAERYLEFLKGYLIPKYA 480 TRFAFKILSRVFNFDHVEVAANPVHLFYVLEQQIEREQFPQEQAERYLEFLKGYLIPKYA Sbjct: 421 TRFAFKILSRVFNFDHVEVAANPVHLFYVLEQQIEREQFPQEQAERYLEFLKGYLIPKYA 480 Query: 481 EFIGKEIQTAYLESYSEYGQNIFDRYVTYADFWIQDQEYRDPDTGQLFDRESLNAELEKI 540 EFIGKEIQTAYLESYSEYGQNIFDRYVTYADFWIQDQEYRDPDTGQLFDRESLNAELEKI Sbjct: 481 EFIGKEIQTAYLESYSEYGQNIFDRYVTYADFWIQDQEYRDPDTGQLFDRESLNAELEKI 540 Query: 541 EKPAGISNPKDFRNEIVNFVLRARANNSGRNPNWTSYEKLRTVIEKKMFSNTEELLPVIS 600 EKPAGISNPKDFRNEIVNFVLRARANNSGRNPNWTSYEKLRTVIEKKMFSNTEELLPVIS Sbjct: 541 EKPAGISNPKDFRNEIVNFVLRARANNSGRNPNWTSYEKLRTVIEKKMFSNTEELLPVIS 600 Query: 601 FNAKTSTDEQKKHDDFVDRMMEKGYTRKQVRLLCEWYLRVRKSS 644 FNAKTSTDEQKKHDDFVDRMMEKGYTRKQVRLLCEWYLRVRKSS Sbjct: 601 FNAKTSTDEQKKHDDFVDRMMEKGYTRKQVRLLCEWYLRVRKSS 644 >UniRef50_Q3J884 PrkA serine kinase n=28 Tax=Bacteria RepID=Q3J884_NITOC Length = 643 Score = 535 bits (1377), Expect = e-150, Method: Composition-based stats. Identities = 209/644 (32%), Positives = 328/644 (50%), Gaps = 23/644 (3%) Query: 2 NIFDHYRQRYEAAKD---EEFTLQEFLTTCRQDRSAYANAAERLLMAI--GEPVMVDTAQ 56 N F Q+ A ++ T ++L +++ A R+ I ++ A Sbjct: 6 NGFTEIIQKDRARRERQEWRGTFVDYLEKVKKEPLLARLAHSRVYDMIMRKGAEDINAAD 65 Query: 57 EPRLSRLFSNRVIARYPAF-EEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGG 115 +P + RL+ + I Y F +EF+G+E + Q+V Y A+ EE +Q+LYL+GPVG G Sbjct: 66 DPHVKRLYGDEPIKVYSFFKDEFFGIERTLAQLVRYFHSASLHGEESRQVLYLMGPVGAG 125 Query: 116 KSSLAERLKSLMQLVPIYVLSANGERSPVNDHPFCLFNPQEDAQILEKEYGIPRRYLGTI 175 KSSL ERL ++ V E P+ + P L P+ + EK + ++ Sbjct: 126 KSSLIERLHRGLENVEPI---YAIEGCPMREEPLHLL-PRHLRKEFEKMLDV---HIEGD 178 Query: 176 MSPWAAKRL-HEFGGDITKFRVVKVWPSILQQIAIAKTEPGDENNQDISALVGKVDIRKL 234 + P RL EF G V+ V S + I P D NNQD S L+G DI KL Sbjct: 179 LCPVCRFRLKEEFDGRYEDVPVITVDFSKRDRRGIGVVPPVDPNNQDTSVLIGSEDISKL 238 Query: 235 EHYAQNDPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALP 294 + Y++ DP +GA N+G++EF+E+FK + LH ++TATQE + Sbjct: 239 DLYSEGDPRVLDLNGAFNVGNRGVVEFIEVFKNETEYLHSMITATQEKFVPAPGRHGTVY 298 Query: 295 FNGIILAHSNESEWVTFRNNKNNEAFLDRVYIVKVPYCLRISEEIKIYEKLLNHSELTHA 354 + I+AHSNE+EW F+ + NEA LDR+ +VKVPY LR+SEEIKIY KLL+HS+ A Sbjct: 299 VDTCIVAHSNEAEWQKFKADHTNEAILDRIVVVKVPYNLRLSEEIKIYGKLLHHSDFR-A 357 Query: 355 PCAPGTLETLSRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDE 414 AP TLE S F+ILSRL+ + +K+R+Y+GE + + K + A E Sbjct: 358 HIAPHTLEVASMFAILSRLEPTPKCDLITKLRLYNGEEVVEKGSTLKINAKELQEAASRE 417 Query: 415 GMNGLSTRFAFKILSRVFNFDHVEVAANPVHLFYVLEQQIEREQFPQEQAERYLEFLKGY 474 GM G+STRF K L E NP+++ L +++ + + + YLE L+ Sbjct: 418 GMFGISTRFIMKALDNALA--DSEEGINPINVREALIVMVKQSELADDTRKHYLELLQDT 475 Query: 475 LIPKYAEFIGKEIQTAYLESYSEYGQNIFDRYVTYADFWIQDQEYRDPDTGQLFDRESLN 534 L Y E + KEI A++ SY E + +F Y+ +A+ ++ +D DT + + Sbjct: 476 LHKVYLEILEKEITKAFVYSYEEQAETLFQNYLDHAEAYVNKTRVKDWDTREEL--QPDE 533 Query: 535 AELEKIEKPAGI--SNPKDFRNEIVNFVLRARANNSGRNPNWTSYEKLRTVIEKKMFSNT 592 L+ +E+ I S FR E++ F+ A G ++ SYE L+ IEKK+ S+ Sbjct: 534 NFLKSVEEQIAIVGSAADGFRQEVIAFL--WAATRRGEKVSYQSYEPLKEAIEKKLTSSV 591 Query: 593 EELLPVISFNAKTSTDEQKKHDDFVDRMMEKGYTRKQVRLLCEW 636 +L +I+ + ++ KK+DD V ++E+GY ++ ++ Sbjct: 592 RDLSRIITKSRTRDEEQAKKYDDLVKNLLERGYNEHSAEVVLKY 635 >UniRef50_D2R2R0 Putative serine protein kinase, PrkA n=3 Tax=Bacteria RepID=D2R2R0_9PLAN Length = 683 Score = 521 bits (1342), Expect = e-146, Method: Composition-based stats. Identities = 168/665 (25%), Positives = 310/665 (46%), Gaps = 54/665 (8%) Query: 13 AAKDEEFTLQEFLTTCRQDRSAYANAAER---LLMAIGEPVMVDTAQEPRL-SRLFSNRV 68 K+ T +E+L R NA +R ++ + G V ++ E R+ R F + Sbjct: 21 RKKNWTGTFEEYLDLVRTSPLVARNAFQRVYDMIQSYGSDVYEESRGERRVSYRFFQD-- 78 Query: 69 IARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMQ 128 + +G+++++E V+ +K AA+G +K++L L GPVG KS++A LK ++ Sbjct: 79 -PDNGGRDAVFGLDESLEAFVNAIKSAAKGYGIEKRVLLLHGPVGSSKSTIARLLKRGLE 137 Query: 129 LV------PIYVLSANGER-------SPVNDHPFCLFNPQEDAQ------ILEKEYGIPR 169 +Y L E P+++ P L + + G Sbjct: 138 RYTTTDEGALYTLGWIDEESPEDVHWCPMHEEPLHLIPERFRDDVTASLNEGRDDDGYKV 197 Query: 170 RYLGTIMSPWAA----KRLHEFGGDIT----KFRVVKVWPSILQQIAIAKTEPGDENNQD 221 + +G + P+ +RL ++GGD T RV ++ + +I I +P DE NQD Sbjct: 198 KIVGD-LCPFCRFMYTERLKKYGGDWTRVIQDIRVKRIVLNEQDRIGIGTFQPKDEKNQD 256 Query: 222 ISALVGKVDIRKLEHYA-QNDPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQ 280 + L G ++ RK+ Y +DP A+ + G AN+GI+EF+E+ K + L+ LL A+Q Sbjct: 257 STELTGDINYRKIAQYGSDSDPRAFNFDGEFNVANRGIIEFIEVLKLDVAFLYDLLGASQ 316 Query: 281 EGNYNGTEGISALPFNGIILAHSNESEWVTFRNNKNNEAFLDRVYIVKVPYCLRISEEIK 340 E + + + +I+ H+NE E+ +NN+ EA DR + VPY R+S+EI+ Sbjct: 317 EHKVK-PKKFAQTDIDEVIIGHTNEPEYRRLQNNEFMEALRDRTVKIDVPYVTRLSDEIR 375 Query: 341 IYEKLLNHSELTHAPCAPGTLETLSRFSILSRLKEPEN--SSIYSKMRVYDGESLKDTDP 398 IYEK N ++ AP T+E + +++L+RL++P N ++ K+++Y+G++L Sbjct: 376 IYEKDYNREKVKGKHIAPHTIEMAAMWAVLTRLEQPNNASLTLLQKLKLYNGKTLPG--- 432 Query: 399 KAKSYQEYRDYAGVDEGMNGLSTRFAFKILSRVFNFDHVEVAANPVHLFYVLEQQIEREQ 458 + + + EG++G+S R+ +S + NP + LE ++ Sbjct: 433 FTEENIKELREEAITEGLHGISPRYVQDKISNALVVHLDSQSINPFMVLNELEAGLKHHS 492 Query: 459 F--PQEQAERYLEFLKGYLIPKYAEFIGKEIQTAYLESYSEYGQNIFDRYVTYADFWIQD 516 +E RY E L G + +Y + E+Q A + + + Y+ + Q Sbjct: 493 LITSEETRSRYREML-GVVKEEYENIVKNEVQRAIAAD-EDALKRLCGNYIDNVKAYTQR 550 Query: 517 QEYRDPDTGQLFDRESLNAELEKIEKPAGI--SNPKDFRNEIVNFVLRARANNSGRNPNW 574 ++ R+ TGQ E + IE+ I S DFR EI+N++ + G+ ++ Sbjct: 551 EKVRNKFTGQY--DEPDERLMRSIEEKIDIPESRKDDFRREIMNYIAAQLMD--GKMFDY 606 Query: 575 TSYEKLRTVIEKKMFSNTEELLPVISFNAK-TSTDEQKKHDDFVDRMM-EKGYTRKQVRL 632 S E+L ++ K+F + ++ + + S ++ D Q K D R++ + GY + Sbjct: 607 RSNERLYKALQLKLFEDQKDTIKLTSLVSQVVDKDTQAKIDVVKGRLIRDFGYDEESATD 666 Query: 633 LCEWY 637 + + Sbjct: 667 VLNYV 671 >UniRef50_A9WHT0 PrkA AAA domain protein n=23 Tax=Bacteria RepID=A9WHT0_CHLAA Length = 692 Score = 513 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 167/687 (24%), Positives = 309/687 (44%), Gaps = 64/687 (9%) Query: 1 MNIFDHYRQRYE-AAKDEEFTLQEFLTTCRQDRSAYANAAER---LLMAIGEPVMVDTAQ 56 M + + R + T E+L ++ NA +R ++M+ G +D + Sbjct: 9 MKMIGEQQDRRRFQQLNWRGTFSEYLDIVVRNPRVARNAFQRVYDMIMSYGTEEFIDAKK 68 Query: 57 EPRLSRLFSNRVIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGK 116 + FS+ + + +G+E + ++V++ K AA+G +K++L L GPVG K Sbjct: 69 RLIRYKFFSDE---SFDGDDAIFGLEIPLMRLVNFFKGAARGYGTEKRVLLLHGPVGSSK 125 Query: 117 SSLAERLKSLMQLVPIY-------------------------VLSANGERSPVNDHPFCL 151 S++ RLK ++ V A E+ P+++ P L Sbjct: 126 STIVRRLKRGLEHYSRTEEGALYTYDWYPGVIENHDTFDWRQVPEAEWEKCPMHEEPLHL 185 Query: 152 FNPQEDAQILEKEYGIPRRY----LGTIMSPWA----AKRLHEFGGDI----TKFRVVKV 199 + +E+ + + P + + + GD RV ++ Sbjct: 186 IPRELRTTFIERLNETLEPDHQIRIEGDLCPVCRFHFRELMQRYDGDWLKVMNHVRVRRL 245 Query: 200 WPSILQQIAIAKTEPGDENNQDISALVGKVDIRKLEHYA-QNDPDAYGYSGALCRANQGI 258 S +I I +P DE NQD + L G ++ RK+ Y +DP A+ + G AN+GI Sbjct: 246 VFSEQDRIGIGTFQPKDEKNQDSTELTGDINYRKIAIYGSDSDPRAFNFDGEFNIANRGI 305 Query: 259 MEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEWVTFRNNKNNE 318 +EFVEM K + L+ LL A+QE ++ + + +I+ H+NE E+ NN+ E Sbjct: 306 IEFVEMLKLDVAFLYDLLGASQEHRIK-SKKFAQTDIDEVIIGHTNEPEYRRLENNEFME 364 Query: 319 AFLDRVYIVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSRFSILSRLKEP-- 376 A DR + +PY R+ +E++IYE+ N ++ AP TLE + +++L+RL+EP Sbjct: 365 ALKDRTVRIDIPYVTRLRDEVRIYERDFNKKKVR-VHIAPHTLEMAAMWAVLTRLEEPKK 423 Query: 377 ENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLSTRFAFKILSRVFNFDH 436 N ++ K+++Y+G++L + + V EGM G+S R+ +S + Sbjct: 424 PNLTLLQKLKLYNGKTLPG---FTEDNIKELRKEAVREGMEGISPRYIQDKISNALVSNQ 480 Query: 437 VEVAANPVHLFYVLEQQIEREQF--PQEQAERYLEFLKGYLIPKYAEFIGKEIQTAYLES 494 E NP + LE ++ +EQ +RY + L + +Y E + E+Q A + + Sbjct: 481 EEGYINPFMVLNELESGLKNHALITDEEQRKRYRDLL-AIVREEYTEIVKNEVQRA-ISA 538 Query: 495 YSEYGQNIFDRYVTYADFWIQDQEYRDPDTGQLFDRESLNAELEKIEKPAGI--SNPKDF 552 E + + Y+ + Q ++ R+ TGQ E + IE+ I S DF Sbjct: 539 DEEAIKRLCANYIDNIKAYTQREKVRNRYTGQY--EEPDERLMRSIEEKIDIPESRKDDF 596 Query: 553 RNEIVNFVLRARANNSGRNPNWTSYEKLRTVIEKKMFSNTEELLPVISFNAKT-STDEQK 611 R EI+N++ G+ ++ + E+L +E K+F + ++ + + S ++ D Q+ Sbjct: 597 RREIMNYIGALAI--EGKTFDYRTNERLHKALELKLFEDQKDSIKLTSLVSRVIDRDTQE 654 Query: 612 KHDDFVDRMM-EKGYTRKQVRLLCEWY 637 K D R++ + GY + + + Sbjct: 655 KIDVVKARLIRDFGYNEQSATDVLNYV 681 >UniRef50_P39134 Protein prkA n=98 Tax=Bacteria RepID=PRKA_BACSU Length = 631 Score = 504 bits (1296), Expect = e-141, Method: Composition-based stats. Identities = 191/644 (29%), Positives = 327/644 (50%), Gaps = 37/644 (5%) Query: 5 DHYRQRYEAAKDEEFTLQEFLTTCRQDRSAYANAAERLLMAIGEPVMVDTAQEPRLSRLF 64 + YR+ E E T ++L +++ +A R+ I + + + + F Sbjct: 8 EKYREE-EQRLKWEGTFADYLEIIKENPMVAQSAHSRVFNMIKDSGIEEIDGRKK-YSFF 65 Query: 65 SNRVIARYPAFEEFYGMEDAIEQIVS-YLKHAAQGLEEKKQILYLLGPVGGGKSSLAERL 123 E +G+E+++E++V Y AA+ L+ +K+IL L+GPV GGKS+L L Sbjct: 66 DR----------ELFGLEESLERLVEEYFHPAAKRLDVRKRILLLMGPVSGGKSTLVTML 115 Query: 124 KSLMQLVPIYVLSAN--GERSPVNDHPFCLFNPQEDAQILEKEYGIPRRYLGTIMSPWAA 181 K ++ + A + P+++ P L P +EYGI + +SP Sbjct: 116 KKGLEAYTLTDNGAVYAIKGCPMHEDPLHLI-PHHLRDDFYREYGIR---IEGSLSPLNV 171 Query: 182 KRLHE-FGGDITKFRVVKVWPSILQQIAIAKTEPGDENNQDISALVGKVDIRKLEHYA-Q 239 RL E +GG I +V +++ S ++ I P D +QDI+ L G +D + Y + Sbjct: 172 MRLEEEYGGRIEDVKVERIFFSEDKRTGIGTFSPSDPKSQDIADLTGSIDFSTIAEYGSE 231 Query: 240 NDPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGII 299 +DP AY + G L +AN+G+MEF EM K K L LL+ TQEGN+ + + + +I Sbjct: 232 SDPRAYRFDGELNKANRGMMEFQEMLKCDEKFLWHLLSLTQEGNFKA-GRFALISADELI 290 Query: 300 LAHSNESEWVTFRNNKNNEAFLDRVYIVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPG 359 +AH+NE+E+ +F +NK NEA R+ ++ VPY L++SEE +IYEK++ S++ AP Sbjct: 291 VAHTNETEYRSFISNKKNEALHSRIIVMPVPYNLKVSEEERIYEKMIAESDVADVHIAPH 350 Query: 360 TLETLSRFSILSRLKEPEN--SSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMN 417 TL+ + FSIL+RLKEP+ + KMR+YDGES + E DEGM+ Sbjct: 351 TLKVAAMFSILTRLKEPKRSDIDLVKKMRLYDGES---VEGYNSVDVEDMKKEYNDEGMS 407 Query: 418 GLSTRFAFKILSRVFNFDHVEVAANPVHLFYVLEQQIERE-QFPQEQAERYLEFLKGYLI 476 G+ R+ +S ++E + N + + L++ +++ E ERYL F+ Sbjct: 408 GIDPRYVINRISSTIIRKNME-SINSLDVLRSLKEGLDQHPSISSEDRERYLNFISAA-R 465 Query: 477 PKYAEFIGKEIQTAYLESYSEYGQNIFDRYVTYADFWIQDQEYRDPDTGQLFDRESLNAE 536 +Y + KE+Q A++ SY E + + D Y+ + + + RDP TG+ + Sbjct: 466 KEYDDIAKKEVQKAFVYSYEESAKTLMDNYLDNVEAYCNKNKLRDPLTGE--EMNPDEKL 523 Query: 537 LEKIEKPAGIS--NPKDFRNEIVNFVLRARANNSGRNPNWTSYEKLRTVIEKKMFSNTEE 594 + IE+ GIS K FR EI+ + G+ ++ S+E+LR I+KK+F++ ++ Sbjct: 524 MRSIEEQIGISENAKKAFREEILIRISAYA--RKGKRFDYNSHERLREAIQKKLFADLKD 581 Query: 595 LLPVISFNAKTSTDEQKKHDDFVDRMM-EKGYTRKQVRLLCEWY 637 ++ + + + KK ++ V R++ E GY L ++ Sbjct: 582 VVKITTSTKTPDEQQLKKVNEVVARLIDEHGYNSTSANELLKYV 625 >UniRef50_UPI00016C05A7 Serine protein kinase (prkA protein), P-loop containing n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C05A7 Length = 589 Score = 496 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 197/641 (30%), Positives = 314/641 (48%), Gaps = 63/641 (9%) Query: 1 MNIFDHYRQ-RYEAAKDEEFTLQEFLTTCRQDRSAYANAAERLLMAIGEPVMVDTAQEPR 59 M+ F R + K T E+L +D + Y A +RL Sbjct: 1 MDFFKLIEDTRIQTDKSLNITFLEYLYILDKDPTIYKLAHQRLY---------------- 44 Query: 60 LSRLFSNRVIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSL 119 + F+GME+ + I +Y AA G EE +QILYL+GPVG GKSSL Sbjct: 45 -------AQLILNTFENNFFGMENTLTSIKNYFFAAANGGEEARQILYLVGPVGAGKSSL 97 Query: 120 AERLKSLMQLVP-IYVLSANGERSPVNDHPFCLFNPQEDAQILEKEYGIPRRYLGTIMSP 178 + +K L++ P IY L P+++ P L P++ + E G+ G + Sbjct: 98 IDSIKQLLENSPAIYHLD----GCPMHEEPLHLI-PKQIRKHFEDALGLK--IQGDLCPK 150 Query: 179 WAAKRLHEFGGDITKFRVVKVWPSILQQIAIAKTEPGDENNQDISALVGKVDIRKLEHYA 238 + +HEF G F + S+ +++ I P D NNQD S L+G VDI K++ Y Sbjct: 151 CKYRLIHEFNGKYENFPITSSKFSVSKRLGIGVVPPVDSNNQDTSILIGSVDISKMDLYP 210 Query: 239 QNDPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGI 298 ++DP + +GA AN+GI+EF+E+FK ++ L+ +LTATQE L F+GI Sbjct: 211 EDDPRVFSLNGAFHAANRGIIEFIEVFKNDVEYLYTMLTATQEKLIPSPSRGEMLYFDGI 270 Query: 299 ILAHSNESEWVTFRNNKNNEAFLDRVYIVKVPYCLRISEEIKIYEKLLNHSELTHAPCAP 358 ILAHSNE+EW F+ + NEA LDR+ ++VPYCL + +EIKIY+K L + AP Sbjct: 271 ILAHSNEAEWNKFKADPTNEAILDRIVKIEVPYCLILDDEIKIYKKFLEQTNFG-VHIAP 329 Query: 359 GTLETLSRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNG 418 TL ++F+IL+RL +N +++K+++Y+ E +T EGM G Sbjct: 330 HTLRVAAQFAILTRLLPSDNVDLFTKLKIYNSE---ETGVDISKVAH--------EGMKG 378 Query: 419 LSTRFAFKILSRVFNFDHVEVAANPVHLFYVLEQQIEREQFPQEQAERYLEFLKGYLIPK 478 +S RF K + F P H VLE +I+ P+ ++Y+EFL+ Y+ Sbjct: 379 ISVRFIMKTFGKAFAS--CGKCLTPPHFMAVLENEIKDMILPENVKKQYIEFLEVYVKKD 436 Query: 479 YAEFIGKEIQTAYLESYSEYGQNIFDRYVTYADFWIQDQEYRDPDTGQLFDRESLNAELE 538 Y + + +++ T ++ SY+E Q IFDRYV A + E E+ + Sbjct: 437 YQKSLEEDVXTNFIYSYTEQAQAIFDRYVDXA---VASDEI----------DETAEEFMT 483 Query: 539 KIEKPAGI--SNPKDFRNEIVNFVLRARANNSGRNPNWTSYEKLRTVIEKKMFSNTEELL 596 +IE I S K FR ++ +V N G +T Y L+ IE K+ ++ ++L Sbjct: 484 EIEMQLNISASAAKGFRQDVAAYV--RTQANLGNLIEYTCYPPLKKAIETKLVTSLKQLT 541 Query: 597 PVISFNAKTSTDEQKKHDDFVDRMMEKGYTRKQVRLLCEWY 637 V++ + +++K+DD + +++E GY + ++ Sbjct: 542 RVVTAENSNAGSDRQKYDDMIAKLIEAGYCSTCAKDTLDYL 582 >UniRef50_A4BNQ6 PrkA protein n=2 Tax=cellular organisms RepID=A4BNQ6_9GAMM Length = 652 Score = 463 bits (1191), Expect = e-129, Method: Composition-based stats. Identities = 171/641 (26%), Positives = 295/641 (46%), Gaps = 32/641 (4%) Query: 10 RYEAAKDEEFTLQEFLTTC--RQDRSAYANAAERLLMAIGEPVMVDTAQEPRLSRLFSNR 67 R AK + T EFL RQ + + + + Q + + Sbjct: 24 REHRAKHWQGTFTEFLDQIVARQPALVTRTSHQYIWDM------LRWMQRKETNEPEESE 77 Query: 68 VIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 E +GME+A+ +I Y K A G E +++L LLGP GGKSSL LK + Sbjct: 78 NNGVQLFSHELFGMENALRRITDYFKAANAGSEVGRRLLLLLGPPSGGKSSLVILLKRGL 137 Query: 128 QLVPIYVLSA--NGERSPVNDHPFCLFNPQEDAQILEKEYGIPRRYLGTIMSPWAAKRL- 184 + A + SP++++P L P + Y + + +SP+ L Sbjct: 138 EEYSHTDEGALYALKGSPLHENPLNLV-PYTLRSEFRETYAV---DIHGELSPFCRAILE 193 Query: 185 HEFGGDITKFRVVKVWPSILQQIAIAKTEPGDENNQDISALVGKVDIRKLEHYAQ-NDPD 243 HEF G+ + V +++ S ++ + P D DI+ L+G VD+ K+ Y DP Sbjct: 194 HEFDGNFMDYPVERIFLSESNRVGVGTYAPHDPTTADIADLIGSVDLSKVSEYGDEGDPR 253 Query: 244 AYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHS 303 A+ +SGA+ A++G++E +E+ K + L+ LLT TQE N + + + ILAH+ Sbjct: 254 AWSWSGAVYAASRGLLEMIEILKVKREFLYLLLTLTQEKNVKVS-RFPLIHVDETILAHT 312 Query: 304 NESEWVTFRNNKNNEAFLDRVYIVKVPYCLRISEEIKIYEKLLNHS-ELTHAPCAPGTLE 362 N +E+ F K NEA LDR+ IV+VPY L +E +IY KL+ + P LE Sbjct: 313 NLAEFRKFLQEKENEALLDRMVIVQVPYTLHYRDEARIYRKLIAQAPTFREIHLDPHALE 372 Query: 363 TLSRFSILSRLKEPENSSI--YSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLS 420 + F++LSRLK E + K+R+Y GE D + + + + + DEG+ G+S Sbjct: 373 VAAVFAVLSRLKPSEREDLDFSKKVRLYAGE---DVEGYSSTEVDRIRHEFEDEGLAGVS 429 Query: 421 TRFAFKILSRVFNFDHVEVAANPVHLFYVLEQQIEREQ-FPQEQAERYLEFLKGYLIPKY 479 RF LS + V + + L L+ IE + +Q +++FL Y Sbjct: 430 PRFVVNALSNAISRSEVR-SLTSMELLVTLKDSIEHDARIDPKQKRSWVDFLVTARKDFY 488 Query: 480 AEFIGKEIQTAYLESYSEYGQNIFDRYVTYADFWIQDQEYRDPDTGQLFDRESLNAELEK 539 ++ +++ A S+ E +N+ ++Y+ + + ++E DP T + R+ L Sbjct: 489 NHWVKEDVHKALFVSFEEESENLLEKYLDEVEATLDNREVVDPITAE--SRQPDERFLRA 546 Query: 540 IEKPAGISNP--KDFRNEIVNFVLRARANNSGRNPNWTSYEKLRTVIEKKMFSNTEELLP 597 +E+ IS+ FR E+V + A G S+ +L+ +EK +F ++L Sbjct: 547 VEEKINISDAGKHTFRQEVVRKAMVAY--KRGEKFTLDSHARLKEAMEKYLFEERRDVLR 604 Query: 598 VISFNAKTSTDEQKKHDDFVDRMM-EKGYTRKQVRLLCEWY 637 +++ A+ + ++K +R++ + GY R R + Sbjct: 605 LVTSVARPDEEAREKIAAVEERLINDYGYDRHSAREALNYV 645 >UniRef50_A0MN77 Serine kinase n=1 Tax=Thermus phage phiYS40 RepID=A0MN77_9CAUD Length = 619 Score = 453 bits (1166), Expect = e-126, Method: Composition-based stats. Identities = 158/639 (24%), Positives = 285/639 (44%), Gaps = 50/639 (7%) Query: 12 EAAKDEEFTLQEFLT--TCRQDRSAYANAAERLLMAIGEPVMVDTAQEPRLSRLFSNRVI 69 + A+ + + +EFL R +A + L AI +E ++ ++F+ Sbjct: 10 KTAESRKLSFKEFLEEKFVRNPAKYSRSAHKYLFDAI---TYFGFDEERKIPKIFA---- 62 Query: 70 ARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMQL 129 +E +G++D I + ++ L+ A G + +++I+ +GPVG KS+ +K ++ Sbjct: 63 ------DELFGVDDKIREFMTILEAGANGHDVRRRIILFVGPVGTAKSTFVSIIKKALER 116 Query: 130 VPIYVLSAN--GERSPVNDHPFCLFNPQEDAQILEKEYGIPRRYLGTIMSPWAAKRLHEF 187 E P+++ P L P++ KE+G+ + + P +L E Sbjct: 117 YSKTEEGEIYAIEFCPIHEDPLNLI-PEDTRDDFYKEFGVK---IDQELCPVCRHKLKEL 172 Query: 188 G-GDITKFRVVKVWPSILQQIAIAKTEPGDENNQDISALVGKVDIRKLEHYAQ-NDPDAY 245 D++ VV+ S ++ IA P D +QD+S LVG + R ++ + P + Sbjct: 173 KYEDVSTVPVVRFTFSEAERRGIATFVPADWTSQDVSVLVGSENFRAVQELGDPSHPLGW 232 Query: 246 GYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNE 305 ++G+L AN+GI EF+E+ KA +L PL+T QE + + +++AH+N Sbjct: 233 NFNGSLFVANRGIHEFIELHKAKPDLLFPLITVAQERKVKVD-RFGLIDVDEVLIAHTNY 291 Query: 306 SEWVTFRNNKNNEAFLDRVYIVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLS 365 +E+ F N K NEA DR + Y LR +E KIY+K+L + AP TL+ +S Sbjct: 292 AEYNKFVNKKENEALKDRTREINWIYNLRWDDEEKIYKKMLGETT---YHLAPWTLKFIS 348 Query: 366 RFSILSRLKE--PENSSIYSKMRVYDGESLKDTDPKAKSYQEYR--DYAGVDEGMNGLST 421 +I+SRL + + + +++Y+G Y EY + D+G G+S Sbjct: 349 GIAIMSRLSPDRDKKYDLLTSLKLYNG-------DYGAMYSEYHVDEMKHPDDGKFGISP 401 Query: 422 RFAFKILSRVFNFDHVEVAANPVHLFYVLEQQIEREQFPQEQAERYLEFLKGYLIPKYAE 481 R A LS P+ + LE+ I+ E LK ++ +Y + Sbjct: 402 RVAVDALSFASV---GNTCVTPIRAYEKLEEIIKSGNVDIPHKEFLA--LKDMILTEYNK 456 Query: 482 FIGKEIQTAYL-ESYSEYGQNIFDRYVTYADFWIQDQEYRDPDTGQLFDRESLNAELEKI 540 FI + A++ S++ Q DRY+ A +I ++ +DP TG E L I Sbjct: 457 FIKDAVFRAFIGSSFATEAQKYVDRYIENAQAFINGEKIKDPFTGNYV--EPDEKFLRSI 514 Query: 541 EKPAGIS--NPKDFRNEIVNFVLRARANNSGRNPNWTSYEKLRTVIEKKMFSNTEELLPV 598 E+ GIS KDFR +I+ V G+ + + L+ IE K+F + + Sbjct: 515 EELVGISKEAAKDFRMKIL--VKATNLLRMGKKITYDIHPLLKEAIENKIFGDRATFIRG 572 Query: 599 ISFNAKTSTDEQKKHDDFVDRMMEKGYTRKQVRLLCEWY 637 + + +++K + V+ + + G+ R + Sbjct: 573 SITSVVKTEEQEKHIQEAVEELKKVGFCEVCAREAISYV 611 >UniRef50_Q18FZ9 Predicted serine protein kinase n=11 Tax=Halobacteriaceae RepID=Q18FZ9_HALWD Length = 689 Score = 443 bits (1140), Expect = e-123, Method: Composition-based stats. Identities = 156/677 (23%), Positives = 291/677 (42%), Gaps = 57/677 (8%) Query: 5 DHYRQRYEAAKDEEFTLQEFLTTCRQDRSAYANAAER---LLMAIGEPVMVDTAQEPRLS 61 Y+ + + +L D NA +R + G D + Sbjct: 13 SQYKDSVPSDLRDAKRFDWYLDELYNDPRIARNAHQRVADMFDHYGTEYDEDAG----VV 68 Query: 62 RLFSNRVIARYPAFEEFYGME--DAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSL 119 + FYG E ++I + V+ +K A+ L +K+I LLGPVG GKS Sbjct: 69 EYCMASEDPLHDGENTFYGREVHESIHEFVNKVKSGARRLGPEKRIKLLLGPVGSGKSHF 128 Query: 120 ---AERL-----------------KSLMQLVPIYVLSANGERSPVNDHPFCLFNPQED-- 157 R K+LM ++P + + +SP+N P L ++ Sbjct: 129 DWMVRRYFEAYTASDAGRMYTFRWKNLMDVIPDQDPADDTVQSPMNQDPLVLLPQEQRDI 188 Query: 158 -AQILEKEYGIPRRYLGTI-MSP----WAAKRLHEFGGDIT-----KFRVVKVWPSILQQ 206 L E P + P + K L + D+ ++++ S ++ Sbjct: 189 VLDRLNDELDAPYTIQNGQSLDPASEFYMDKLLAHYNDDLEAVLQNHVEIIRLVASENKR 248 Query: 207 IAIAKTEPGDENNQDISALVGKVDIRKLEHYAQNDPDAYGYSGALCRANQGIMEFVEMFK 266 + EP D+ NQD + L G V+ KL Y ++DP A+ YSGA C AN+G+ E+ K Sbjct: 249 QCVETFEPKDKKNQDETELTGDVNYSKLAVYGESDPRAFDYSGAFCNANRGLFSGEELLK 308 Query: 267 APIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEWVTFRNNKNNEAFLDRVYI 326 + L+ L A+QE + + + +I+ +N E+ + ++ EAF DR Sbjct: 309 LQREFLYDFLHASQEQTIK-PKNNPRIDIDEVIVGRTNMPEYREKKGDEKMEAFNDRTKR 367 Query: 327 VKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSRFSILSRLKEPE-NSSIYSKM 385 V PY L EE +IY K+L ++++ P LE F +L+RL EP+ N+S+ K Sbjct: 368 VDFPYVLEYDEESEIYRKMLRNADVPDMHIEPHALEMAGLFGVLTRLAEPDTNASLVQKA 427 Query: 386 RVYDGESLKDTDPKAKSYQEYRDY-AGVDEGMNGLSTRFAFKILSRVF--NFDHVEVAAN 442 + Y+GE D + +E + + EGM+G+S RF ++ + Sbjct: 428 KAYNGELDDGDDVDVRKLRENAEESTDIGEGMDGVSARFIGDEIAEAIMDATHRDRTYLS 487 Query: 443 PVHLFYVLEQQIERE-QFPQEQAERYLEFLKGYLIPKYAEFIGKEIQTAYLESYSEYGQN 501 P+ +F E +E P+E ++Y +L + +Y E ++++ A E Q Sbjct: 488 PLSVFSHFETNLENHGSIPEENLDQYHRYL-EMVREEYRERAIEDVRHALAYDLDE-IQR 545 Query: 502 IFDRYVTYADFWIQDQEYRDPDTGQLFDRESLNAELEKIEKPAGI--SNPKDFRNEIVNF 559 ++Y+ + +I D D TG+ +++ L +E+ I DFR E+ N+ Sbjct: 546 QGEKYMDHVMAYIDDATVEDALTGR--EQDPDETFLRSVEEKLDIPEDRKDDFRQEVSNW 603 Query: 560 VLRARANNSGRNPNWTSYEKLRTVIEKKMFSNTEELLPVISFNAKTSTDEQKKHDDFVDR 619 V R G + + ++LR +E+K++ + + + + + D+ ++ + +++ Sbjct: 604 VSRRA--REGTSFDPHDNDRLRRALERKLWEDKKHNINFSALVSANELDDDER-NAWIEA 660 Query: 620 MMEKGYTRKQVRLLCEW 636 ++++GY++ + + E+ Sbjct: 661 LVDRGYSQAGAQEVLEF 677 >UniRef50_Q08Z64 Serine protein kinase, putative n=5 Tax=Cystobacterineae RepID=Q08Z64_STIAU Length = 750 Score = 412 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 117/736 (15%), Positives = 256/736 (34%), Gaps = 123/736 (16%) Query: 19 FTLQEFLTTCRQDRSA-YANAAERL---LMAIGEPVMVDTAQEPRLSRLFSNRVIARYPA 74 + +E+++ D A NAA+ L + G + R ++F+ I R Sbjct: 25 LSFEEYVSLFFNDPRAQARNAAQYLRDVMDHYGTEQVPHPTGTIRRFKVFNVPGIDRDGR 84 Query: 75 FEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMQLV---- 130 +++A+ +++ +++ L GP G KS+ LK+ M+ Sbjct: 85 VAGQEEVQNALYRLLGNF----VRTGRINKLILLHGPNGSAKSTFVNALKAGMEDYSNQP 140 Query: 131 --PIYVLSANGE--------------------------------------RSPVNDHPFC 150 +Y L + DHP Sbjct: 141 YGALYRLGWVFPSEKLIKGSIGFGERGPTPETDLTTTFAHLEAESIDVRMPCELRDHPLF 200 Query: 151 LFNPQEDAQILE---------------KEYGIPRRYLGTIMSPWAAK----RLHEFGGDI 191 + P E ++LE ++ + M + L+ + GD Sbjct: 201 VVPPVERRKMLEAALKKKGLGSGDGASGDFILSNYIRDGEMCHKCRRIFTALLNAYAGDY 260 Query: 192 ----TKFRVVKVWPSILQQIAIAKTEPGDENNQDISALVGKVDIRKLEHYAQNDPDAYGY 247 ++ + + S Q EP + + + L + Sbjct: 261 LKVLRHVQIERFYVSRRYQEGTVTVEPQMSVDAIVQQITADRTQLNLPPALHGVVL-FEP 319 Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 G L AN+G++E+ ++ K P++ LL ++ + L + +++A +NE Sbjct: 320 HGPLVHANRGMIEYSDLLKRPLEAFKYLLGFSETSQVPLEPFV--LQLDEVLIASANEKH 377 Query: 308 WVTFRNNKNNEAFLDRVYIVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSRF 367 F+ + +F R+ +V+VPY E +IY+ + + + AP E + + Sbjct: 378 LGAFKELPDFASFKGRIELVRVPYLRHYKLEQEIYDAQITSTSVGK-HVAPHATEVAAMW 436 Query: 368 SILSRLKEP-------------ENSSIYSKMRVY---------DGESLKDTDPKAKSYQE 405 ++L+RLK+P ++ + KM +Y ++K+ E Sbjct: 437 AVLTRLKKPIPERYAADVKELVDHVTPLEKMHLYAEGKAPHRLSLANIKELKRLRTELYE 496 Query: 406 YRDYAGVDEGMNGLSTRFAFKILSRVFNFDHVEVAANPVHLFYVLEQQIEREQFPQ---- 461 D EG +G S R L N + + LE + + + Sbjct: 497 ESDTYPNYEGRSGASAREIKTALFNA-AQSPDYKCLNALAVLEELEAICQDKSVYEFLQQ 555 Query: 462 ---EQAERYLEFLKGYLIPKYAEFIGKEIQTAYLESYSEYGQNIFDRYVTYADFWIQDQE 518 + + EF++ + +Y + E++ + + + + +RY+ + W++ ++ Sbjct: 556 EVVDHYHDHAEFVR-AVEGEYLNRVDSEVRDSMGLVSEDQYRELVERYLQHVSHWVRGEK 614 Query: 519 YRDPDTGQLF-DRESLNAELEKIEKPAGISNPKDFRNEIVNFVLRARANNSGRNPNW-TS 576 R+ TG++ E AE+E I P G +P ++R +++ + R +N ++ Sbjct: 615 MRNRVTGEMDRPDEGRMAEMEAIIMPKG-EDPGEYRRGLISSIGAHRLDNPEAQMDYPRI 673 Query: 577 YEKLRTVIEKKMFSNTEELLP---------VISFNAKTSTDEQKKHDDFVDRMMEK-GYT 626 + + + F + +L + S EQ + + + M+++ GY Sbjct: 674 FPDMFKRLRDHYFEERKRVLRKNKENILKYLSEERGALSQREQSQVESTLKTMVDRYGYC 733 Query: 627 RKQVRLLCEWYLRVRK 642 + + ++ R Sbjct: 734 EHCAKDAILFLMKKRY 749 >UniRef50_D0LUZ5 Putative serine protein kinase, PrkA n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LUZ5_HALO1 Length = 765 Score = 398 bits (1022), Expect = e-109, Method: Composition-based stats. Identities = 115/749 (15%), Positives = 242/749 (32%), Gaps = 132/749 (17%) Query: 16 DEEFTLQEFLTTCRQDRSAY-ANAAERL---LMAIGEPVMVDTAQEPRLSRLFSNRVIAR 71 + E+L + +A + G + R RLF Sbjct: 27 RRVMSFAEYLDVVAAAPRTHLRSAPQYALDCFDHFGTDTVSSPRGTRRRFRLFD---CPW 83 Query: 72 YPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMQLV- 130 + G ED +I L +++ L GP G KS++ + MQ Sbjct: 84 AEGRDRLVGQEDTQNRIYRAL-ANFVREGTANKLILLHGPNGSAKSTIIRCIGRAMQHYS 142 Query: 131 -----PIYVLSANGE-------------------------------------RSPVNDHP 148 +Y ++ + DHP Sbjct: 143 SLDDGALYRINWIFPAQRSTRSGIGFAGAGMGEGGEHDTYAYLPDELIDAKLSDELRDHP 202 Query: 149 FCLFNPQEDAQILEKEYG-------------------------IPRRYLGTIMSPWAAK- 182 L + A +L + G + +S Sbjct: 203 MFLVPVAQRAAMLAEMLGEEPGEGADAGAWDPGAAEAAKRPFVLSDYLRFGRLSHKNRAI 262 Query: 183 ---RLHEFGGDI----TKFRVVKVWPSILQQIAIAKTEPGDENNQDISALVGKVDIRKLE 235 L + GD +V + + + EP + + + L Sbjct: 263 FEALLANYQGDYLKVLRHVQVERFYIQHRYREGYVTVEPQLSVDASERQITADRSVAALP 322 Query: 236 HYAQNDPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPF 295 Q+ + Y G L AN+G++E+ ++ K P++ LLT ++ + + + + L Sbjct: 323 AALQSVSL-FEYGGELVGANRGLIEYSDLLKRPLEAYKYLLTTVEQASVSLSS--ATLFL 379 Query: 296 NGIILAHSNESEWVTFRNNKNNEAFLDRVYIVKVPYCLRISEEIKIYEKLLNHSELTHAP 355 + + L SNE F+ +F R+ +V+VPY L ++E +IY++ L + Sbjct: 380 DLVFLGTSNEIHLNAFKETAEFLSFRGRLELVRVPYLLDFTQEEQIYQQKLEEAAGRR-H 438 Query: 356 CAPGTLETLSRFSILSRLKEP-------------ENSSIYSKMRVY---------DGESL 393 AP + +++L+R+++P + K +Y DG Sbjct: 439 VAPHCAHVAALWAVLTRMRKPQAERYPAQLSEMIGRLTPLEKAELYASGQVPDGLDGRRA 498 Query: 394 KDTDPKAKSYQEYRDYAGVDEGMNGLSTRFAFKILSRVFNFDHVEVAANPVHLFYVLEQQ 453 K+ D EG +G S R +L +P+ + +E+ Sbjct: 499 KELRRAIDDIWRESDPYPFYEGRSGASPREMQVVLFNA-ANSPNYRYVSPLAILDEIEEL 557 Query: 454 IEREQFPQ-----EQAERYLEFLK--GYLIPKYAEFIGKEIQTAYLESYSEYGQNIFDRY 506 I++ Q Y + ++ + + E I E+++A + +F+RY Sbjct: 558 IKQASVYDFLKQDVQPGGYHDHVRFIEVVRERLVERIDDEVRSALGLIEEREYERLFERY 617 Query: 507 VTYADFWIQDQEYRDPDTGQLFDRESLNAELEKIEKPAGI-SNPKDFRNEIVNFVLRARA 565 + + W + + +P TG E+ A + ++E + +DFR ++++ + Sbjct: 618 IVHVLHWTKKERVLNPSTGAY--EEADAALMREVESTLALEGEAEDFRRDLISKIGAWSL 675 Query: 566 NNSGRNPNWT-SYEKLRTVIEKKMFSNTEELLP---------VISFNAKTSTDEQKKHDD 615 ++ P++T + + ++ + ++++ + + A + ++ Sbjct: 676 DHPNEKPDYTQIFAEHFKRLKADYYEQRKKIVRRGVSDLLTLLTAEGAGLDPEALERAKR 735 Query: 616 FVDRMME-KGYTRKQVRLLCEWYLRVRKS 643 + + E Y R R R S Sbjct: 736 AREALCERFDYQHDSARDALTLLHRYRYS 764 >UniRef50_A9GWJ6 Protein kinase n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GWJ6_SORC5 Length = 800 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 111/755 (14%), Positives = 243/755 (32%), Gaps = 135/755 (17%) Query: 15 KDEEFTLQEFLTTCRQDR-SAYANAAER---LLMAIGEPVMVDTAQEPRLSRLFSNR--- 67 + + Q++L + +AA + G + E +LF Sbjct: 51 EQRVLSFQQYLELFASNPVRFGRDAARYVRDMFDHFGTRTVKKPWGELTRFQLFDLPWEL 110 Query: 68 ------------VIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGG 115 + + G E+ ++ L + +++ + GP G Sbjct: 111 PATEPAQQGAPAAASYHGRDFALIGHEELQAEVYRVLCNF-VREGRANRLVLMHGPNGSA 169 Query: 116 KSSLAERLKSLMQLVPI--------------------------------------YVLSA 137 KS+LA + ++ Y Sbjct: 170 KSTLAACILRALEHYSTLDEGAVYRFHWVFPSRKTMRGSIGFGGDVKASAADGTSYAHLE 229 Query: 138 NGERS-----PVNDHPFCLFNPQEDAQILEKEYGI-------PRRYLGTIMSPWAAKRLH 185 + + + DHP L +E ++ + Y P + +S + Sbjct: 230 DDQIDARLVIELRDHPLFLLPVRERRALILRLYEDAGATEPPPEWLMSGKLSHKNQQVFE 289 Query: 186 EFG--------GDITKFRVVKVWPSILQQIAIAKTEPGDENNQDISALVGKVDIRKLEHY 237 + +V + + S ++ P + + + L Sbjct: 290 ALLVASGGSLVETLRHVQVERYFISRRYRVGAVTIGPELSVDAGERQITADRSLASLPTS 349 Query: 238 AQNDPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNG 297 Q + G L A G++EF ++ K P+ L + G + + + N Sbjct: 350 LQATTL-FEAHGELIEAAGGVLEFSDLLKRPLDAFRYLQLTLETGEVSLPQQ--TVQTNV 406 Query: 298 IILAHSNESEWVTFRNNKNNEAFLDRVYIVKVPYCLRISEEIKIYEKLLNHSELTHAPCA 357 +++ +N+ FR + +F R +++ PY +E IY+ + A Sbjct: 407 VMIGSANDVHLNAFREHPEFPSFRGRFELLRAPYLRSYPDEQAIYDTQIVPFVTR--HVA 464 Query: 358 PGTLETLSRFSILSRLKEPE-------------NSSIYSKMRVY---------DGESLKD 395 P ++F++L+R+++PE + + KM ++ D E+ K Sbjct: 465 PHATRVAAQFAVLTRMRQPEAKRYPDALAPLVSSLTAVEKMELFATGTAPERFDAEAQKV 524 Query: 396 TDPKAKSYQEYRDYAGVDEGMNGLSTRFAFKILSRVFNFDHVEVAANPVHLFYVL----E 451 ++ D + EG G+S R +L +P + L + Sbjct: 525 LRAGIEAIYHESDASVDFEGRLGVSPREVRTLLLDA-AQSEDHACLSPFAVLSELDALCK 583 Query: 452 QQIEREQFPQEQ-AERYLE--FLKGYLIPKYAEFIGKEIQTAYLESYSEYGQNIFDRYVT 508 +Q E + ++Q A Y + + + + + +E++TA +FDRYV+ Sbjct: 584 RQAEYDWLKEKQLAGGYHDHRLFREVVRTRLLDTTEEEMRTASGLVDETRYAELFDRYVS 643 Query: 509 YADFWIQDQEYRDPDTGQLFDRESLNAELEKIEKPAGISNP-KDFRNEIVNFVLRARANN 567 + W++ ++ R+P TG + ++E G+ D R +++ + ++ Sbjct: 644 HVGVWVKGEKIRNPHTGDF--ENPDERMMREVEALLGVRTKHDDHRRGLISAIAAWAIDH 701 Query: 568 SGRNPN-----WTSYEKLRTVI--EKK-----MFSNTEELLPVISFNAKTS-------TD 608 G+ KLR + E++ + + LL + K+ + Sbjct: 702 PGQKIVNAVVFPQQIRKLREAVFTERRKGVALLVRDLVALLRDAQSDGKSEKGWGELREE 761 Query: 609 EQKKHDDFVDRMMEKGYTRKQVRLLCEWYLRVRKS 643 E++ ++R+ GY + LR R + Sbjct: 762 ERRNATRALERLRGMGYCDRCALDAASALLRARFA 796 >UniRef50_C0QJY5 PrkA2 n=11 Tax=Deltaproteobacteria RepID=C0QJY5_DESAH Length = 687 Score = 358 bits (918), Expect = 5e-97, Method: Composition-based stats. Identities = 120/690 (17%), Positives = 241/690 (34%), Gaps = 82/690 (11%) Query: 16 DEEFTLQEFLTTCRQDRSAYANAAE---RLLMAIGEPVMVDTAQEPRLSRLFSNRVIARY 72 ++ +L + + + + +A + R+++ G + + +F + Sbjct: 5 KDQKSLMFHIDALKTGKRIFEDAFQGVTRMILESGVEKVSVKGKTTYHFDIF-------H 57 Query: 73 PAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAE----------- 121 + GM D I VS++K A++G ++ L+G G GK+ + Sbjct: 58 KGKKHLIGMYDEINSFVSFVKDASEGGSSREMAFVLVGEPGNGKTFFVDYLCDQYRLFLS 117 Query: 122 ---------RLKSLMQL---VPIYVLSANGERSPV----------NDHPFCLFNPQEDAQ 159 R K+L +L I + + P+ ++ L + Sbjct: 118 RPENRKYTFRFKNLDKLNGYGRITTIESQTYEDPMILAMGLCETMDETKTYLAKTVRLSD 177 Query: 160 ILEKEYGIPRRYLGTIMSPWAAKRLHEF-GGDITK----FRVVKVWPSILQQIAIAKTEP 214 R LG S + ++ E+ D+ + +V V + K Sbjct: 178 HEIDTLFAKYRPLGA-CSSYIWSQIREYADADMEEMLSFIDIVPVPMTESLGTITGKYPA 236 Query: 215 GDENNQDISALVGKVDIRKLEHYAQ-NDPDAYGYS-GALCRANQGIMEF-VEMFKAPIKV 271 D+ L+G+ I++L H N+P + GAL R G + F E++K + Sbjct: 237 KDKITSSAVDLLGEESIQRLLHITDTNNPYRFDLRRGALARVAGGGIHFSDEIYKNKKDL 296 Query: 272 LHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEWVTFRNNKNNEAFLDRVYIVKVPY 331 + L Q P + +I+A SN SE+ +F + +DR I V + Sbjct: 297 VQVYLGVIQNRTIEIDGY--KWPIDTLIVATSNNSEFDSFLAEREEAPIVDRCRICYVAH 354 Query: 332 CLRISEEIKIYEKLLNHSEL-----THAPCAPGTLETLSRFSILSRLKEPENSSIYSKMR 386 + ++ + P S +L+RL + E + M+ Sbjct: 355 NTDYKLQQELTRYAIGSDVKTTLNSDKLHQDPNLNYAASVGVVLTRLPKSEKLTPVETMK 414 Query: 387 VYDGES--LKDTDPKAKSYQEYRDYAGVDE--GMNGLSTRFAFKILSRVFNFDHVEV--A 440 + GE K A+ + + G GL R + + + Sbjct: 415 LAAGEVAGEKSLKTLAELIDTLNQGTDITKRFGQKGLGQRNLGRSIQLLLESSETNEGNC 474 Query: 441 ANPVHLFYVLEQQIEREQFPQEQAERYLEFLKGYLIPKYAEFIGKEIQTAYLESYSEYGQ 500 + +F LE+ + ++++ LK Y E I E+ AY+ + Sbjct: 475 MFALDIFNTLERVVLDYVTDPSDRTKFMDDLK-IGRGLYRERIMTEMFNAYM-DEPLAIK 532 Query: 501 NIFDRYVTYADFWIQDQ--------EYRDPDTGQLFDRESLNAELEKIEKPAGISNPKDF 552 Y+ + + +Y+DP TG+L + ++ +E+ G+ + Sbjct: 533 KDVMNYI-NMIIGVDAEHLGPDLMWKYKDPQTGELKAMKIDERYIKNVEERLGLKTEEQ- 590 Query: 553 RNEIVNFVLRARANNSGRNPNWT--SYEKLRTVI-EKKMFSNTEELLPVI-SFNAKTSTD 608 R N + + +PN+ +L I + ++ S+ ++ + +T+ + Sbjct: 591 RASFRNSIRKIYGQKISIDPNYDFMDNLELVKAITDVRLKSDIAGAGSLVGALANRTNEE 650 Query: 609 EQKKHDDFVDRMMEK-GYTRKQVRLLCEWY 637 QK HD ++ MMEK GY R E++ Sbjct: 651 NQKLHDRMINTMMEKLGYCRTCSTKTIEYF 680 >UniRef50_A6G891 Putative serine protein kinase, PrkA n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G891_9DELT Length = 780 Score = 352 bits (903), Expect = 3e-95, Method: Composition-based stats. Identities = 126/763 (16%), Positives = 243/763 (31%), Gaps = 147/763 (19%) Query: 16 DEEFTLQEFLTTCRQDRSA-YANAAERL---LMAIGEPVMVDTAQEPRLSRLFSNRVIAR 71 + +E+ N+A+ + L + G + RLF Sbjct: 29 RRLLSFEEWFELLVDRPRIHARNSAQYVRDALESFGRDEVRTPRGLTTRFRLFD----RS 84 Query: 72 YPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMQ--- 128 + G E A ++ L L ++ L GP G KS+L + L++ ++ Sbjct: 85 FDDSPRLVGQERAQNELFEVLDGYC-RLGRTDSLILLHGPNGSAKSTLLDCLQAGLEAYS 143 Query: 129 ---LVPIYVLSAN-----------GERSP--------------------------VNDHP 148 +Y + G +P DHP Sbjct: 144 HTDEGALYRFAWVFPSGQQLSAGIGFGAPGSRELLGDESYARLDTGSIESRLTDENKDHP 203 Query: 149 FCLFNPQEDAQILEKEYGIP------------RRYLGTIMSPWAAK----RLHEFGGD-- 190 L + ++LE+ +G + +S K L+ + GD Sbjct: 204 IYLIPHEPRLRLLEELFGAEVDGQSEDGFVVAHQIRNGDLSARNRKIFDALLNGYQGDLG 263 Query: 191 --ITKFRVVKVWPSILQQIAIAKTEPGDENNQDISALVGKVDIRKLEHYAQNDPDAYGYS 248 +V +++ S + + EP + + G L +G Sbjct: 264 KVYQHIQVERLYLSRTYRRGLVDVEPKQTVDARSFPVTGDRAFASLPPSVSGQVL-HGTQ 322 Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G L A +G++ F ++ K P + LLTAT+ G L + + +N+ + Sbjct: 323 GDLVDAQRGVLNFSDLLKRPYEHYKYLLTATESGRVVLD--HLLLGLDVVFTGSANDIKL 380 Query: 309 VTFRNNKNNE--AFLDRVYIVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 + FR ++ E +F R+ ++ VPY E KIY++ + L AP L+ Sbjct: 381 LEFRALRSAEYQSFRARLNLISVPYLRDYRVERKIYQEQVG-DLLRGVHIAPHVPRILAL 439 Query: 367 FSILSRLKEPENSSIYSKM-------------------RVYDGESLKDTDPKA----KSY 403 + +++RL+ P++ K+ RV +G S + + Y Sbjct: 440 WGVMTRLRPPDSEKYPKKISAALDKLTPLAKADLYAYGRVPEGLSSDEAKELLAAVPEMY 499 Query: 404 QEYRDYAGVD-----------EGMNGLSTRFAFK-ILSRVFNFDHVEVAANPVHLFYVLE 451 E +A V EG G S R +L+ N + +F L Sbjct: 500 AERFAHAVVRVEGSDTPLGDYEGSFGASVRDLKNVLLAAASNLPPESHSVTVPRVFDELR 559 Query: 452 Q----QIEREQFPQEQAERYLEF-----LKGYLIPKYAEFIGKEIQTAYLESYSEYGQNI 502 Q+ E + + ++ + E++ A E + Sbjct: 560 DFLADQVNHRWMHLEAKGGFHLLTGEGSITERAFSRWLDLSDWEVREALGLVDEERYLEL 619 Query: 503 FDRYVTYADFWIQDQEYRDPDTGQLFDRESLNAELEKIEKPAGISNPKDFRNEIVNFVLR 562 F +YV +A ++ + D TGQL D + ++EK + FR +I+ + Sbjct: 620 FRKYVIHASHHVKGERIFDEVTGQLTD--PDEKFMRELEKSMDPNAGPGFREDILARIGA 677 Query: 563 ARANNSGRNPNW-TSYEKLRTVIEKKMFSNTEELLP------------VISFNAKTSTDE 609 ++ P + + + + + +E + + S DE Sbjct: 678 WALSHPNEGPIYEEIFADYFGRMREDYYRQQKETVRRGIQYMLERLTNDRQVDLDLSQDE 737 Query: 610 QKKHDDFVDRMMEKG----------YTRKQVRLLCEWYLRVRK 642 + K +D + +TR+ ++ R R Sbjct: 738 RDKAQRALDVLTGVHDPDDGKRRERHTRESLKETLVQLSRHRY 780 >UniRef50_C0QJY2 Sensory box histidine kinase/response regulator protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QJY2_DESAH Length = 775 Score = 341 bits (873), Expect = 6e-92, Method: Composition-based stats. Identities = 113/757 (14%), Positives = 228/757 (30%), Gaps = 148/757 (19%) Query: 10 RYEAAKDEEFTLQEFLTTCRQDR-SAYANAAERLLMAIGEPVMVDTAQEPR-----LSRL 63 R+E K T +FL + N + + V V + P Sbjct: 30 RHEKRK--PLTFIQFLDLIEKQPARVIRNIFQVFYDMMFSHVKVANSDVPDDSGEVNFTY 87 Query: 64 FSNRVIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSL---- 119 + + + ++ +++ +++ + ++ +I GP G GKS+ Sbjct: 88 YDCSKLFVEGSENPYFADRLFANRMMKHME-GLRHGAQQNRIYIFHGPHGCGKSTFLNNL 146 Query: 120 --------------------------------------AERLKSLMQLV--PIYVLSANG 139 +RL +++ + + Sbjct: 147 LKRFESYANTEEGMRYEALWRIDVNRLGQPGMTERTSSIDRLVHILERHYPDLIDQTVED 206 Query: 140 E------------RSPVNDHPFCLFNPQEDAQIL---------------EKEYGIPRRYL 172 E +D+P + +L EKEY Sbjct: 207 ELNHGVDKACLEIPCISHDNPLLIIPKHLRRGMLDKLIRNDEFKWRLFTEKEYEWVFSQE 266 Query: 173 GTIMSPWAAKRLHEFGGDITKF----RVVKVWPSILQQIAIAKTEPGDENNQDISALVGK 228 + + L E G I + + S I+ PGD+ ++ Sbjct: 267 ACTVCSSIYQALFERLGSIEEVFNMLYARPYFFSRRMGKGISVFNPGDKPLKNNVITNPM 326 Query: 229 VDIRKLEHYAQNDPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTE 288 + R + ++ Y YS + N G+ +++ ++ + L E + + Sbjct: 327 LQTRINNLFRDSNLIHYVYS-RFAKTNNGVYALMDIKSHNVERMVELHNIISEAIHKVED 385 Query: 289 GISALPFNGIILAHSNESEWVTFRNNKNNEAFLDRVYIVKVPYCLRISEEIKIYEKLLNH 348 N + LA N + +N + +F DR+ + +PY L + E+K+ + Sbjct: 386 LEE--NVNSLFLALMNPED---KKNIREFPSFSDRIQYINIPYVLDVETEVKVLTNIFGR 440 Query: 349 SELTHAPCAPGTLETLSRFSILSRLKEPENSSI------------------YSKMRVYDG 390 + P +E +R I SRLKE + + KM +Y G Sbjct: 441 HVMDSF--LPMVMENFARVMISSRLKEKSDVMLEWIGDPAKYRRYCDANLMLLKMEIYSG 498 Query: 391 E-----SLKDTDPKAKSYQEYRDYAGVDEGMNGLSTRFAFKILSRVFNFDHVEVA-ANPV 444 D EG +G S R + +I + ++ E + Sbjct: 499 APPQWLQDDDRKALTAKLWRRIIEESNTEGSSGFSGRDSIRIFDQFYSMHAKEDSLITMP 558 Query: 445 HLFYVLEQQIEREQFPQEQAERYLEFLKGYLIPKYAEFIGKEIQTAYLESYSEYGQNIFD 504 L ++ E+A L+ Y + ++++ + + Sbjct: 559 ELCRFFRNLMK------ERAGLIPAGFLESLLRMYDYNVLQQVKESLYYYNEDRIALDVK 612 Query: 505 RYVTYADFWIQDQEYRDPDTGQLFDRESLNAELEKIEKPAGISNPKDFRNEIVN------ 558 Y++ +F I + TG++ D NA LE IE +N R EI+ Sbjct: 613 NYISAVNFEI-GSTAKCLFTGEVLDIT--NAYLESIENRLFAANADQQRREIMRIDVLKE 669 Query: 559 ---FVLRARANNSGRNPNWTS-----YEKLRTVIEKKMFSNTEELLPVISFNAKTSTDEQ 610 L G++ T +E+ ++K++ E S T+ Sbjct: 670 YTTNALSVEMMVEGKDITDTRLFNSLHERYVHNLKKRVLEPFLENENFRSAIKDYDTEGF 729 Query: 611 KKHDDFVDR---------MMEKGYTRKQVRLLCEWYL 638 K +D + M++ YT + +C + + Sbjct: 730 KTYDKRIRSDVEFLINNMMVKFNYTEQGANEVCIYVI 766 >UniRef50_Q3IPY4 Predicted serine protein kinase 2 n=11 Tax=Halobacteriaceae RepID=Q3IPY4_NATPD Length = 758 Score = 334 bits (856), Expect = 7e-90, Method: Composition-based stats. Identities = 116/752 (15%), Positives = 239/752 (31%), Gaps = 131/752 (17%) Query: 5 DHYRQRYEAAKDEEFTLQEFLTTCRQDRSAYANAAERLLMAI---GEPVMVDTAQEPRLS 61 D R YE +L E++ T ++ ++ A+A++ LL AI G +++ +E + Sbjct: 12 DALRDTYEP----PMSLTEYVETVFENPTSAAHASKYLLKAIEAAGTRTVIEEGEEKQRY 67 Query: 62 RLFSNRVIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAE 121 R F + G + V L+ A ++++IL+L GP GKS L Sbjct: 68 RFFDD---PYNDGEHAVLGNTAVLNAFVDDLRSIAARRGKEEKILWLDGPTATGKSELKR 124 Query: 122 RLKSLM------QLVPIYVLSAN----------------------GERSPVNDHPFCLFN 153 L + + Y + N SPV HP +F Sbjct: 125 CLINGLREFSKTDNGRRYTVEWNVSATDATPGLTYGDDSSPDEDEWYPSPVQAHPLSVFP 184 Query: 154 PQEDAQILEKEYGIPRRYL----GTIMSPWAAKRLHEFGGDITKFRVVKVWPSILQQ--- 206 + Q++ ++ + P++ + + V ++ ++ + Sbjct: 185 ERVREQLIADLNDSRTDHIPIALDAELDPFSREAYDHLEERYRREGVEDLFSAVTDEKHL 244 Query: 207 ----------IAIAKTEPGDENNQDISALVGKV---DIRKLEHYAQNDPDAYGYSGALCR 253 I D + LVG +++L+ + +P A+ Y G L + Sbjct: 245 RVKNFVVDVGQGIGVLHSEDAGSPKER-LVGSWMAGMLQRLDSRGRKNPQAFSYDGVLSQ 303 Query: 254 ANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNES------E 307 N G++ VE +L LL E + + + ++ SN + Sbjct: 304 GN-GLLTIVEDAAQHADLLQKLLNVPDERRVKLDKAVGM-DIDTQMVVISNPDLEAQLNK 361 Query: 308 WVTFRNNKNNEAFLDRVYIVKVPYCLRISEEIKIYEKLL--------------------- 346 +A R+ + Y +S E ++ + L Sbjct: 362 HAEMEGTDPLKALKRRLDKHEFQYLTNLSLEAELLRRELTNETERWTAESYDELESRIRE 421 Query: 347 --------NHSELTHAPCAPGTLETLSRFSILSRLKE---PENSSIYSKMRVYDGESLKD 395 + AP +E + +++ SRL P + K VYD L+D Sbjct: 422 PVTLSVRDAEGTVKDRELAPHAVEAAALYAVASRLDAESLPPGIDLVDKALVYDKGYLQD 481 Query: 396 TDPKAKSYQEYRDYAGVDEGMNGLSTRFAFKILSRVFNFDH--------VEVAANPVHLF 447 D + Y+E D+ EG G+ + I++ + + VE P + Sbjct: 482 GDE--RRYREEFDFGDATEGKTGIPVTYTRDIVADLLHETPDRHHPDLDVETIVMPRDVL 539 Query: 448 YVLEQQIEREQFPQEQAERYLEFLKGYLIPKYAEFIGKEIQTAYLESYSEYGQNIFDRYV 507 + + ++ E + ++ A + + ++ + Y+ Sbjct: 540 NTMAEGLDDAPVFSSAERTEYENRLVPVKNHIFGRQESDVIDA-IMREKQVDESTVEEYI 598 Query: 508 TYADFWIQDQEYR---------DPDTGQLFDRESLNAELE-KIEKPAGISNPKDFRNE-I 556 + W++D+ DP ++F+ E L E + + + FR E I Sbjct: 599 EHVYAWVEDETIENDRGESVPPDPLKMKVFETEHLGRFDEDDYDGTEPEAAVETFRAEKI 658 Query: 557 VNFVLRARANNSGRNP-----NWTSYEKLRTVIEKKMFSNTEELLPVISFNAKTSTDEQK 611 + + R N + + TV+ + + + + Sbjct: 659 ITALNRHAWRNRDAEFRVSDVDPRDIPVIETVLGRHDWDDVRRTYGDLDPAQWDDPPSGT 718 Query: 612 KHDDFVDRMME-----KGYTRKQVRLLCEWYL 638 + + +R + GY+ L + Sbjct: 719 ETERVKERALTNMQELFGYSPAAAELTSRHVM 750 >UniRef50_B8FIY2 Putative serine protein kinase, PrkA n=10 Tax=Deltaproteobacteria RepID=B8FIY2_DESAA Length = 790 Score = 332 bits (851), Expect = 2e-89, Method: Composition-based stats. Identities = 111/762 (14%), Positives = 226/762 (29%), Gaps = 152/762 (19%) Query: 6 HYRQRYEAAKDEEFTLQEFLTTCRQDR-SAYANAAER---LLMAIGEPVMVDTAQEPRLS 61 R++ A L++FL + + N + ++ + P + +P Sbjct: 20 KIREKEHGA---PIPLEQFLQIAASEPDRVFRNILQVFHDMIHSYVGPGSDEYLGDPETI 76 Query: 62 RL--FSNRVIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSL 119 + + + F+ + + ++ +G+ + +I GP G GKS+ Sbjct: 77 NFVYYDTHRLFVEGSDNPFFADRLFANRFIQHVTTFRRGI-PQNRIYIFEGPHGSGKSTF 135 Query: 120 A-----------------------------------------ERLKSLMQ---------- 128 ++LK+L++ Sbjct: 136 LNNLLMKFEQYTKTPAGVSYETIWRIDKNELGAGEIEAAAILKQLKNLVETPGVRGVTPM 195 Query: 129 ----LVPIYVLSANGERSPVNDHPFCLFNPQEDAQILEKEYGIPR------------RYL 172 L + + P +DHP +++++ P Sbjct: 196 KGADLAALSNKNYLQVHCPNHDHPIMQIPKAYRRELIDELIDDPVFKKKILYQKQYQWIY 255 Query: 173 GTIMSPWA----AKRLHEFGGDITKFRVVKVWPSILQQI---AIAKTEPGD--ENNQDIS 223 L G F+++ P + ++ P D + +S Sbjct: 256 RDKPCTICASLFRSLLDVLGAPSKVFKMIYARPYQFNRRLGEGVSVFNPADMIPKSNLLS 315 Query: 224 ALVGKVDIRKLEHYAQNDPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGN 283 LV + + L ++ Y YS + N GI +++ A + L EG Sbjct: 316 NLVLQQQLDSL--LRSSNQVRYVYS-RYAKTNNGIYALMDIKDANKYRFNALHGIISEGV 372 Query: 284 YNGTEGISALPFNGIILAHSNESEWVTFRNNKNNEAFLDRVYIVKVPYCLRISEEIKIYE 343 + + + + LA N + +F DR+ +K+ Y L + E+KIY+ Sbjct: 373 HKLEDVEE--DVHSLFLALMNPEDHN---QVDQALSFSDRITYIKINYVLDYNTEVKIYK 427 Query: 344 KLLNHSELTHAPCAPGTLETLSRFSILSRLKEP------------------ENSSIYSKM 385 P LE ++ I +RLK + + + KM Sbjct: 428 SNFGDQIERRF--LPRVLENFAKVIISTRLKTSSEPLLEWIGDPYRYRRYCDRNLLLLKM 485 Query: 386 RVYDGE-----SLKDTDPKAKSYQEYRDYAGVDEGMNGLSTRFAFKILSRVF-NFDHVEV 439 +Y G S +D + + +EG G S R + KI + + Sbjct: 486 DIYTGVIPAWLSERDRQAFSAKRRRKVVAESENEGRAGFSGRDSIKIFNEFYTAVAKKGK 545 Query: 440 AANPVHLFYVLEQQIEREQFPQEQAERYLEFLKGYLIPKYAEFIGKEIQTAYLESYSEYG 499 N L + + + E L+ Y + +E++ + E Sbjct: 546 LINMDMLVNFFRKHQKGQDVIIP------EGFMESLVNSYNYMLLQEVKESLYYYNEERI 599 Query: 500 QNIFDRYVTYADFWIQDQEYRDPDTGQLFDRESLNAELEKIEKP-AGISNPKD----FRN 554 N Y+ +F I +E + TG+ E + L +E+ G P FR Sbjct: 600 SNDIQNYLFAINFEIGREE-KCVYTGEKL--EITESYLSSMEQRFMGAGVPGQAQLMFRE 656 Query: 555 EIVN-FVLRARANNSG-RNPNWTSYEKLRTVIEKKMF-------------SNTEELLPV- 598 EI + + G T ++E+ + N + Sbjct: 657 EIQREYASKTLTQEMGLEKKPITETAVYNKLMERYVHNLKEKVMDPFQENENFRNAIKDF 716 Query: 599 -ISFNAKTSTDEQKKHDDFVDRM-MEKGYTRKQVRLLCEWYL 638 +++ + + + GYT + R +C + + Sbjct: 717 GTDAFKTYDRRIREEVSFLMANLQKKYGYTDQGAREICMYVI 758 >UniRef50_Q1ILJ3 Magnesium protoporphyrin chelatase, putative n=9 Tax=Bacteria RepID=Q1ILJ3_ACIBL Length = 502 Score = 247 bits (630), Expect = 9e-64, Method: Composition-based stats. Identities = 95/578 (16%), Positives = 178/578 (30%), Gaps = 111/578 (19%) Query: 45 AIGEPVMVDTAQEPRLSRLFSNRVIARYPAFEEFYGMEDAIE-QIVSYLKHAAQGLEEKK 103 + EP + + L +R+ F G ED + Q+V+ L + Sbjct: 15 SFSEPRLARRRVKDELRENLLDRLRQGGNIFPGIVGYEDTVTPQVVNALLS--------R 66 Query: 104 QILYLLGPVGGGKSSLAERLKSLMQLVPIYVLSANGERSPVNDHPFCLFNPQEDAQILEK 163 LLG G KS + L SL+ Y+ ++D+P+ Sbjct: 67 HNFILLGLRGQAKSRILRALTSLLDAETPYL-----AGCEIHDNPY-------------- 107 Query: 164 EYGIPRRYLGTIMSPWAAKRLHEFGGDITKFRVVKVWPSILQQIAIAKTEPGDENNQDIS 223 + + FG D + W S ++ P + I+ Sbjct: 108 ----------DPICRRCKDMIKSFGDDA---PIA--WLSAEERYVEKLATP----DVTIA 148 Query: 224 ALVGKVDIRKLEHYAQNDPDAYGYS-GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEG 282 L+G +D K G L RAN+GI E+ K+ L QEG Sbjct: 149 DLIGDIDPIKAAKQGFTLASELTVHYGLLPRANRGIFAINELPDLAGKIQVGLFNIMQEG 208 Query: 283 NYNGTEGISALPFNGIILAHSNESEWVTFRNNKNNEAFLDRV-YIVKVPYCLRISEEIKI 341 + LP + ++ +N ++ K DR+ ++ Y + E I I Sbjct: 209 DVQIKGYPIRLPLDVALVFSANPEDYTA--RGKIITPLKDRIGSEIRTHYPSTVEEGISI 266 Query: 342 YEKLL-NHSELTHAPCAPGTLETLSRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKA 400 ++ + T E + + + ++R Sbjct: 267 TQQEAWTRRDGTRIHIPSYIHEIVEQIAFVAR---------------------------- 298 Query: 401 KSYQEYRDYAGVDEGMNGLSTRFAFKILSRVFNFDHVEVAANPVHLFYVLEQQIEREQFP 460 D VD+ +G+S R + V + + H I P Sbjct: 299 -------DDKRVDK-RSGVSQRLPISTVENVLSNAERRALRSGEHTVVPRVADI-YAALP 349 Query: 461 QEQAERYLEFLKGYLIPKYAEFIGKEIQTAYLESYSEYGQNIFDRYVTYADFWIQDQEYR 520 + LE I + I+TA ++Y Y Q + ++ E + Sbjct: 350 AITGK--LELEYEGEIKGADAIAREVIRTAIAKTYDRYFQGNNNHLKQVVQYFDLGGEVQ 407 Query: 521 DPDTGQLFDRESLNA------ELEKIE--------KPAGISNPKDFRNEIVNFVLRARAN 566 DT E L + +EKIE P ++ +F I+ + + Sbjct: 408 MLDTA--PAEEVLESMKNIQGLMEKIENVGAKTSDAPELQASAAEF---ILEGLHAHKRI 462 Query: 567 NSGRNPNWTSYEKLRTVIEKKMFSNTEELLPVISFNAK 604 +T+ EK ++ ++++F ++ + + + Sbjct: 463 GRTEERKFTAGEK-QSAKKEQLFREEDDFVRERNRRNR 499 >UniRef50_D2EEA4 Putative serine protein kinase, PrkA n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EEA4_9EURY Length = 571 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 70/494 (14%), Positives = 168/494 (34%), Gaps = 58/494 (11%) Query: 194 FRVVKVWPSILQQIAIAKTEPGDENNQDISALVGKVDIRKLEHYAQNDPDAYGYSGALCR 253 V + + I+ D++ GK+ +KL ++ + Y + Sbjct: 88 ITVERATDEDIIHISEPVVAADDQHLDYKGIFGGKLFYKKLNELGGDNSNVLAYDFGILG 147 Query: 254 AN-----QG-IMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 + +G I+ E+ K + LL Q+ + F+ I++ +N + Sbjct: 148 SQSAPSPRGNIIYISEVLKGSSSFANSLLDFVQDTRTKVSPSF-KESFDAIMIGTTNMDD 206 Query: 308 WVTFRNNKNNEAFLDRVYIVKVPYCLRISE-EIKIYEKLLNHSELTHAPCAPGTLETLSR 366 + + L R I+ ++S+ E + + + ++ P L L+R Sbjct: 207 YKKI-ADSIKPYLLRRSNIIVFRSMTKLSDAETALNDIYTHAAKELDIHYPPHLLRMLAR 265 Query: 367 FSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGV---DEG-MNGLSTR 422 + + L +N S+ K +Y+ + + + +EG G+ Sbjct: 266 IWVEASLSHYDNISLKDKADMYNNVFIPGIKVSLEDIIREATQKPILELEEGVKLGIPYD 325 Query: 423 FAFKILSRVFNFDHVEVAANPVHLFYVLEQQIERE-----QFPQEQAERYLEFL------ 471 K S++ ++ ++ + L+ +I + RY+E Sbjct: 326 DMVKSPSKLLSYANLSKKIE-MESGNTLKDEINEKICLGRILDSVTGTRYIEDFLNTLED 384 Query: 472 -----------------KGYLIPKYAEF---IGKEIQTAYLESYSEYGQNIFDRYVTYAD 511 + Y E + ++ + +E SE +I ++Y+ Sbjct: 385 LSSETKARVQPRENGEGSVIVNDAYNEIKRMMKNDV--SMIEYGSEKVHDIVNKYIINVY 442 Query: 512 F------WIQDQEYRDPDTGQLFDRESLNAELEKIEKPAGISNPKDFRNEIVNFVLRARA 565 + D++ + P G L + + +EK A + R I + + A Sbjct: 443 YMNKIGNGENDKKVKVPMFGTLKSIDYD--FVNDLEKRANL-RSDVLRESIYSIINYASI 499 Query: 566 NNSGRNPNWTSYEKLRTVIEKKMFSNTEELLPVISFNAKTSTDEQKKHDDFVDRMMEKGY 625 ++ ++ + T+IE+ + + + A T+T + + + ++ E GY Sbjct: 500 ADNTKSVDELVKILTPTIIERYPEITNAVVDKLSTSVAGTATTMDQ--NRIISKLKEIGY 557 Query: 626 TRKQVRLLCEWYLR 639 + R+ + +L+ Sbjct: 558 CNQCARVAYDLFLK 571 >UniRef50_Q7UYY5 Probable magnesium protoporphyrin chelatase n=4 Tax=Planctomycetaceae RepID=Q7UYY5_RHOBA Length = 482 Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats. Identities = 71/479 (14%), Positives = 152/479 (31%), Gaps = 57/479 (11%) Query: 28 CRQDRSAYANAAE-RLLMAIGEPVMVDTAQEPRLSRLFSNRVIARYPAFEEFYGMEDAIE 86 +A E R L + E + + + FS + R F G ED + Sbjct: 5 VPSPAKTTMDAPEARNLQQLIESGWKSKSVKQEIRDNFSRMLANREELFPGIVGYEDTV- 63 Query: 87 QIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMQLVPIYVLSANGERSPVND 146 I G + + +G G KS + +L + ++ + PV++ Sbjct: 64 -IPEISLALLAGHD-----MLFMGEKGQAKSRIMRQLVQFLD---PWIPFIDHPDLPVHE 114 Query: 147 HPFCLFNPQEDAQILEKEYGIPRRYLGTIMSPWAAKRLHEFGGDITKFRVVKVWPSILQQ 206 P + L K + W + ++ P Sbjct: 115 DPLNPISS------LGKRLVAEHSPEDIQIGWWHRS----------ERYAERLSPGTKFA 158 Query: 207 IAIAKTEPGDENNQDISALVGKVDIRKLEHYAQNDPDAYGYSGALCRANQGIMEFVEMFK 266 I + +P + L G V + E + G + R ++GI E+ + Sbjct: 159 DIIGEIDP--------AKLTGGVSMSAEEALS---------FGLIPRMHRGIFAMNELPE 201 Query: 267 APIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEWVTFRNNKNNEAFLDRV-Y 325 V L +E + + +IL +N S + R+ K DR+ Sbjct: 202 LDDLVQVGLFNILEERDVQIRGYPIRFELDVMILFSANPSTYN--RSGKVIPQLKDRIGT 259 Query: 326 IVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSRFSILSRLKEPENSSIYSKM 385 IV+ Y ++ I+I ++ + P + I+ + S Y + Sbjct: 260 IVQTHYPSERTQGIEILQQEVGDDLGGPYPV--HVPLF--MYQIIEEITHQARQSKY--I 313 Query: 386 RVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLSTRFAFKILSRVFNFDHVEVAANPVH 445 G S + + ++ G+ G + R + L ++ ++ + + Sbjct: 314 DQASGVSARFSLANFRTIVASARQRGIVHGESPAVPRISD--LGHLYASSLGKLELDLMG 371 Query: 446 LFYVLEQQIEREQFPQEQAERYLEFLKGYLIPKYAEFIGKEIQTAY--LESYSEYGQNI 502 + E+Q+ + + E+++ + + + AE ++ + SEY + + Sbjct: 372 THQMTEKQVIDSVIAEAIQTVFGEYIEEHGLAEIAEIFRGGVRVEVGTMLPSSEYAERL 430 >UniRef50_A8TM27 Putative Ser protein kinase n=1 Tax=alpha proteobacterium BAL199 RepID=A8TM27_9PROT Length = 318 Score = 196 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 113/228 (49%), Positives = 152/228 (66%) Query: 2 NIFDHYRQRYEAAKDEEFTLQEFLTTCRQDRSAYANAAERLLMAIGEPVMVDTAQEPRLS 61 ++F Y + Y+ K+ E +L E+L C D A+A+AAER++ AIG+P +VDT+++ RL Sbjct: 6 DVFSEYTETYQTRKESEMSLMEYLELCGSDPMAFASAAERMVAAIGDPEVVDTSRDARLG 65 Query: 62 RLFSNRVIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAE 121 R+F NR I YPAF +F+GMED +E++V Y ++AAQGLEE+KQ+LYLLGPVGGGKSSLAE Sbjct: 66 RIFMNRTIKIYPAFHDFFGMEDTVERLVGYFRYAAQGLEERKQVLYLLGPVGGGKSSLAE 125 Query: 122 RLKSLMQLVPIYVLSANGERSPVNDHPFCLFNPQEDAQILEKEYGIPRRYLGTIMSPWAA 181 RLK+LM+ PIYVL A + SPV + P LF+PQ Q L+ +GIP R L ++SPWA Sbjct: 126 RLKTLMEQHPIYVLKAGDQISPVFESPLGLFDPQRMGQKLQDRFGIPLRKLNGLISPWAV 185 Query: 182 KRLHEFGGDITKFRVVKVWPSILQQIAIAKTEPGDENNQDISALVGKV 229 KRL EF GD+TKF V KV A + P D + + Sbjct: 186 KRLDEFDGDLTKFTVAKVRFGGWWSGTCASSRPAKPGRADRAMQIIDR 233 >UniRef50_D2QXC4 Magnesium protoporphyrin chelatase, putative n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2QXC4_9PLAN Length = 469 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 68/451 (15%), Positives = 146/451 (32%), Gaps = 60/451 (13%) Query: 57 EPRLSRLFSNRVIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGK 116 + + F + A F G +D + I G + + LG G GK Sbjct: 21 KREIHDNFLVELAAGNELFPGILGYDDTV--IPEVSLALIAGHD-----MLFLGEKGQGK 73 Query: 117 SSLAERLKSLMQLVPIYVLSANGERSPVNDHPFCLFNPQEDAQILEKEYGIPRRYLGTIM 176 S + L + Y+ + P+++ P K++ + Sbjct: 74 SRMMRSLVRFLDPEIPYL---DIPGVPIHEDPLQPLTSA------AKKFLAEHAEEDVPI 124 Query: 177 SPWAAKRLHEFGGDITKFRVVKVWPSILQQIAIAKTEPGDENNQDISALVGKVDIRKLEH 236 + W ++ P I + +P + LVG V + E Sbjct: 125 AWWKR----------EDRYTERLAPGTKFADIIGEIDP--------AKLVGGVSMSTEEA 166 Query: 237 YAQNDPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFN 296 + G + R ++GI E+ + V L +E + + Sbjct: 167 L---------HFGLIPRMHRGIFAMNELPELDELVQVGLFNILEERDVQIRGYPVRFDID 217 Query: 297 GIILAHSNESEWVTFRNNKNNEAFLDRV-YIVKVPYCLRISEEIKIYEKLLNHSELTHAP 355 +IL +N S + R+ K DR+ I+ Y L + I+I E+ + P Sbjct: 218 VLILFSANPSTYN--RSGKVIPQLKDRIGSIIHTHYPLERALGIQILEQESSMDLGGEYP 275 Query: 356 CA-PGTL-ETLSRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVD 413 P + E + + +I +R + + G S + + ++ GV Sbjct: 276 VVIPYFMKELIEQITIQARKSKY--------IDQQSGVSARFSLANFRAMVASARRRGVI 327 Query: 414 EGMNGLSTRFAFKILSRVFNFDHVEVAANPVHLFYVLEQQIEREQFPQEQAERYLEFLKG 473 G R + L ++ ++ + + + E+Q+ + + ++++ Sbjct: 328 LGEKPAVPRISD--LGHLYASSLGKLELDLMGSHQMNERQVLDAVIADAISSVFKQYVEE 385 Query: 474 YLIPKYAEFIGKEIQTAY--LESYSEYGQNI 502 + + + AE G+ ++ L Y + + Sbjct: 386 HGLAEIAEIFGRGVKIEVGDLLPSPHYSERL 416 >UniRef50_D2S953 Putative magnesium chelatase n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2S953_9ACTO Length = 511 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 74/420 (17%), Positives = 134/420 (31%), Gaps = 72/420 (17%) Query: 66 NRVIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 R+ A P+ G ED + V + G + L LLG G GK+ L L Sbjct: 58 ARLAAGEPSLPGIVGFEDTVVPEVE--RALIAGHD-----LVLLGERGQGKTRLIRTLVG 110 Query: 126 LMQLVPIYVLSANGERSPVNDHPFCLFNPQEDAQILEKEYGIPRRYLGTIMSPWAAKRLH 185 L+ + S +N+HP +S WA +++ Sbjct: 111 LLDEW-----TPVLTGSELNEHPL------------------------APISVWAHRQIA 141 Query: 186 EFGGDITKFRVVKVWPSILQQIAIAKTEPGDENNQDISALVGKVDIRKLEH-YAQNDPDA 244 E GD T W ++ P + + L+G VD K+ DP+ Sbjct: 142 EH-GDATPVG----WLHRSERFGEKLATP----DTSVGDLIGDVDPIKVAEGRTLGDPET 192 Query: 245 YGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSN 304 Y G + R N+GI E+ ++ LL +E + LP + +++A +N Sbjct: 193 VHY-GLVPRTNRGIFSVNELPDLAERIQVALLNVLEERDIQIRGYRVRLPLDLLLVASAN 251 Query: 305 ESEWVTFRNNKNNEAFLDRV-YIVKVPYCLRISEEIKIYEKLLNHSELTHAP-------- 355 ++ + DR V+ Y + +++E+++ + + S L Sbjct: 252 PEDYTN--RGRIITPLKDRFGAEVRTHYPIELADEVRLLTQEAHTSWLDGGAGGGRPGGE 309 Query: 356 ------CAPGTLETLSRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDY 409 +E ++RF+ L R + G S + ++ Sbjct: 310 QLETPLVPEHLVEIVARFTRLVRDSN--------HVDQRSGVSARFAIAGLETVAASAVR 361 Query: 410 AGVDEGMNGLSTRFAFKILSRVFNFDHVEVAANPVHLFYVLEQQIEREQFPQEQAERYLE 469 G R + VE A + E ++ Q A+ + Sbjct: 362 RAAVAGETRPVARVVDLPSIVPASRGKVEFADSGADPDDERETEVLEHLLRQATAQTFRA 421 >UniRef50_Q2J637 Magnesium chelatase, ChlI subunit n=45 Tax=Actinobacteria (class) RepID=Q2J637_FRASC Length = 507 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 63/327 (19%), Positives = 109/327 (33%), Gaps = 57/327 (17%) Query: 55 AQEPRLSRLFSNRVI---ARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGP 111 A P + L N V P F G ++ + V + G + + LG Sbjct: 55 AHRPVRTELRDNLVALMQGDGPRFPGIVGFDETVLPQVE--RAILAGHD-----IVFLGE 107 Query: 112 VGGGKSSLAERLKSLMQLVPIYVLSANGERSPVNDHPFCLFNPQEDAQILEKEYGIPRRY 171 G GK+ L L SL+ V +NDHP+ + Sbjct: 108 RGQGKTRLIRTLVSLLDEWSPAV-----AGCEINDHPYAPVCGRCR---------ALAAD 153 Query: 172 LGTIMSPWAAKRLHEFGGDITKFRVVKVWPSILQQIAIAKTEPGDENNQDISALVGKVDI 231 LG + R F + + + L+G VD Sbjct: 154 LGDALPVVWRHRGERFSEKLAT------------------------PDTSVGDLIGDVDP 189 Query: 232 RKLEH-YAQNDPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGI 290 K+ DP+ Y G + R N+GI E+ ++ LL +E + + Sbjct: 190 VKVAEGRTLGDPETVHY-GLVPRTNRGIFSVNELPDLAERIQVALLNVLEERDIQVRGYL 248 Query: 291 SALPFNGIILAHSNESEWVTFRNNKNNEAFLDRV-YIVKVPYCLRISEEIKIYEKLLNHS 349 LP + +++A +N ++ + DR V+ Y L +++E+ + + S Sbjct: 249 LRLPLDLLLVASANPEDYTN--RGRIITPLKDRFGAEVRTHYPLHLTDELALIRQEAVMS 306 Query: 350 ELTHAPCAP----GTLETLSRFSILSR 372 AP +E ++RF+ L R Sbjct: 307 WAGSPLGAPEIPDHLVEIVARFTRLVR 333 >UniRef50_Q8TXP4 Predicted ATP-dependent protease n=1 Tax=Methanopyrus kandleri RepID=Q8TXP4_METKA Length = 471 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 73/471 (15%), Positives = 149/471 (31%), Gaps = 80/471 (16%) Query: 65 SNRVIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAERLK 124 ++ I P + G + A+E A+ ++++ L L+GP G GKS +A+ + Sbjct: 14 ADIKIPDNP-LDMVIGQDHAVE--------YAKLAAKQRRHLLLVGPPGVGKSMIAQGIA 64 Query: 125 SLM----QLVPIYVLSANGERSPV---------NDHPFCLFNPQEDAQILEKEYGIPRRY 171 L+ + + +Y AN ER V + L +P+E + + ++ G Sbjct: 65 ELLPKPREQIEVYHNPANPERPIVKVRTRDEVEKEDSDTLLSPEEVPEPVAEQLGFRCPS 124 Query: 172 LGTIMSP----WAAKRLHEFG---------GDITKFRVVKVWPSILQQIAI--------- 209 G P ++ T +V ++ + +I + Sbjct: 125 CGEYSDPDCRYCPRCGAQKYSARTYRATQYDRATSRQVAVIYERVGDRIRVVKPDSEGEE 184 Query: 210 -AKTEPGDEN------NQDISALVGKVD---IRKLEHYAQNDPDAYGYSGALCRANQGIM 259 P D + L+G V E + P GA+ A++G++ Sbjct: 185 KKVLVPLDRKPFVQATGASETELLGDVKHCPWGGDEQLGEP-PYKRVIPGAVHEAHEGVL 243 Query: 260 EFVEMFKAPIKVLHPLLTATQEGNYNGTEGISA----------LPFNGIILAHSNESEWV 309 E+ + + LLTA QE Y T +P + I++ N + Sbjct: 244 FIDELAQL-GPLQQHLLTAMQEKEYPITGKNPQSSGAAVRVEGVPCDFILVGACNIQDLP 302 Query: 310 TFRNNKNNEAFLDRVYIVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSRFSI 369 + Y V + + +EE + E+ P + Sbjct: 303 MILS-PLRSRIQGEGYEVLMKTTMPDTEENRAKLAQFVAQEVERDGRIPHATREAVEEIV 361 Query: 370 -----LSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLSTRFA 424 +R+ + E ++ ++R G D +Y + V + Sbjct: 362 KEARRRARVIDGERDALTLRLRDLSGVVRLAGDLAVMEGAKYIEPKHVRAAIKKAKP-VE 420 Query: 425 FKILSRVFNFDH-------VEVAANPVHLFYVLEQQIEREQFPQEQAERYL 468 +I+ + + ++P V++ + QE Y+ Sbjct: 421 DQIIEEYGSLEEGLRRDVATCSLSSPAAQQRVIQGDTTDSYYHQEDKRGYI 471 >UniRef50_D1CAP1 Mg-chelatase subunit ChlI-like protein n=3 Tax=Bacteria RepID=D1CAP1_SPHTD Length = 465 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 70/437 (16%), Positives = 133/437 (30%), Gaps = 62/437 (14%) Query: 41 RLLMAIGEPVMVDTAQEPRLSRLFSNRVIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLE 100 R L + E + + + ++ P F G + + V Sbjct: 5 RTLGELRESGYQVLSVREEMRKNLIQKLRTGEPIFPGVIGYDHTVIPQVENAI------- 57 Query: 101 EKKQILYLLGPVGGGKSSLAERLKSLMQLVPIYVLSANGERSPVNDHPFCLFNPQEDAQI 160 Q + LG G K+ +A L +L+ V S ++D+PF Sbjct: 58 LSGQDIIFLGERGQAKTRMARSLVNLLDEEVPAV-----AGSEIHDNPF----------- 101 Query: 161 LEKEYGIPRRYLGTIMSPWAAKRLHEFGGDITKFRVVKVWPSILQQIAIAKTEPGDENNQ 220 +S +A + E GD T VW ++ A P + Sbjct: 102 -------------APISRYARDLIAE-KGDYTPI----VWIRREERYAEKLATP----DT 139 Query: 221 DISALVGKVDIRKLEHYAQNDPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQ 280 I+ L+G+VD K+ + + G + R N+GI E+ ++ LL + Sbjct: 140 TIADLIGEVDPIKVAEGRYLSDELTIHYGLIPRTNRGIFAINELPDLAERIQVGLLNILE 199 Query: 281 EGNYNGTEGISALPFNGIILAHSNESEWVTFRNNKNNEAFLDRV-YIVKVPYCLRISEEI 339 E + LP + I+A +N ++ + DR ++ Y I EI Sbjct: 200 ERDVQIRGYRIRLPLDVYIVASANPEDYTN--RGRIITPLKDRYGSQIRTHYPETIDLEI 257 Query: 340 KIYEKLLNHSELTHAPC-APGTL-ETLSRFSILSRLKEPENSSIYSKMRVYDGESLKDTD 397 +I E+ + P + E ++ + L+R + G S++ + Sbjct: 258 EIMEQERRQFDTDGIEVMVPDFMREVVAEITHLARRSHDVSQR--------SGVSVRMSI 309 Query: 398 PKAKSYQEYRDYAGVDEGMNGLSTRFAFKILSRVFNFDHVEVAANPVHLFYVLEQQIERE 457 ++ + G R + L V E +I + Sbjct: 310 SNYENVISNAIKRAIRLGEKQAVPRISDLH----AAVASTTGKIELEALGEVQEDRIVDK 365 Query: 458 QFPQEQAERYLEFLKGY 474 + + Sbjct: 366 LMQGAVLTTFNRYFSVR 382 >UniRef50_C8SCW8 ATPase associated with various cellular activities AAA_5 n=2 Tax=Archaeoglobaceae RepID=C8SCW8_FERPL Length = 473 Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 75/496 (15%), Positives = 159/496 (32%), Gaps = 72/496 (14%) Query: 17 EEFTLQEFLTTCRQDRSAYANAAERLLMAIGEPVM-VDTAQEPRLSRLFSNRVIARYPAF 75 EE+ +E + N E + + E ++ P + Sbjct: 2 EEYIFKEVEVKESSAPTFLLNGEEVDIFSDEFRAYWEKPLHELVREKILEYERRGEDPFY 61 Query: 76 EEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMQLVPIYVL 135 E G + E + + L + + +G G GK++ ++ + L+ + + Sbjct: 62 -EIVGKKIEKEMVKNALISGSS--------ILFVGKKGYGKTTFSKSIAKLLPERQLAI- 111 Query: 136 SANGERSPVNDHPFCLFNPQEDAQILEKEYGIPRRYLGTIMSPWAAKRLHEFGGDITKFR 195 + ++D+P + K + E Sbjct: 112 ----KGCKIHDNP-----------------------VRPSCFACKRKVMEE--------- 135 Query: 196 VVKVWPSILQQIAIAKTEPGDENNQDISALVGKVDIRKLEH-YAQNDPDAYGYSGALCRA 254 KV + + + I PGD L+G + I+K+ Y + P+ + G + +A Sbjct: 136 -EKVELTWIGRKWIRI--PGDPM-MTTRQLIGGISIQKIREGYDLDHPEVF-TPGRVLKA 190 Query: 255 NQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGT-EGISALPFNGIILAHSNESEWVTFRN 313 N+GI F E+ P + L +E I L + I +A +N + + Sbjct: 191 NRGIAYFDELGSIPSALQTLLHELIEEKQVTTPEGEIVPLKIDAIFIASTNPANYRGTEA 250 Query: 314 NKNNEAFLDRVYIVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSRFSILSRL 373 K E LDR+ + + + EEI+I L N S A L+ L+R +R Sbjct: 251 IK--EPLLDRMEAIPIGPPETLKEEIEI--GLRNMSLKNGATIPEWHLKILARVVRYARN 306 Query: 374 KEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLSTRFAFKILSRVFN 433 KE + +++P ++ + D+ + G S + Sbjct: 307 KERCR-----------YAARIESEPSCRATIKLFDHVKANATRKGRSV-VMLSDYGECYE 354 Query: 434 FDHVEVAANPVHLFYVLEQQIEREQFPQEQAERYLEFLKGYLIPKYAEFIGKEIQTAYLE 493 + + + + + I + + E + + + + + Sbjct: 355 VIKLGLRSRIEVDYEAEKDTIIEKLVEEAINRTCGEIYGSIEDSDFRKLSRELRKKEIIN 414 Query: 494 SYSEYGQNI--FDRYV 507 Y + + + F +Y+ Sbjct: 415 VYEDSPKEMETFWKYI 430 >UniRef50_B9L3Z1 Magnesium chelatase subunit ChlI n=2 Tax=Bacteria RepID=B9L3Z1_THERP Length = 466 Score = 170 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 66/372 (17%), Positives = 124/372 (33%), Gaps = 58/372 (15%) Query: 57 EPRLSRLFSNRVIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGK 116 + + ++ A P F G E+ + V A Q + LG G K Sbjct: 21 REEMRKNLIAKIQAGEPIFPGIIGYEETVIPQVENAILAG-------QDIIFLGERGQAK 73 Query: 117 SSLAERLKSLMQLVPIYVLSANGERSPVNDHPFCLFNPQEDAQILEKEYGIPRRYLGTIM 176 + +A L +L+ V S VND+PF + Sbjct: 74 TRMARLLVNLLDEEIPIV-----AGSEVNDNPF------------------------DPI 104 Query: 177 SPWAAKRLHEFGGDITKFRVVKVWPSILQQIAIAKTEPGDENNQDISALVGKVDIRKLEH 236 S +A + E G + + W ++ A P + I+ L+G+VD K+ Sbjct: 105 SKYARDLIAEMGDE---TPIA--WIRREERYAEKLATP----DTTIADLIGEVDPIKVAE 155 Query: 237 YAQNDPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFN 296 + + G + R N+GI E+ ++ LL +E + LP + Sbjct: 156 GRYLSDELTIHYGLIPRTNRGIFVINELPDLAERIQVGLLNIMEERDVQIRGYRVRLPLD 215 Query: 297 GIILAHSNESEWVTFRNNKNNEAFLDRV-YIVKVPYCLRISEEIKIYEKLLNHSELTHAP 355 ++A +N ++ + DR ++ Y I EI I E+ E+ Sbjct: 216 VFVVASANPEDYTN--RGRIITPLKDRFGAQIRTHYPRTIEHEIAIMEQERMPVEVPGIT 273 Query: 356 C-APGTL-ETLSRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVD 413 P + E ++ + L+R + P+ + G S + + ++ + Sbjct: 274 VTVPQYMREIVAEITHLAR-RSPD-------ISQRSGVSARMSVANYETLISNAVKRALR 325 Query: 414 EGMNGLSTRFAF 425 G R + Sbjct: 326 LGEKHAVPRISD 337 >UniRef50_D0L6A4 Mg-chelatase subunit ChlI-like protein n=20 Tax=Actinomycetales RepID=D0L6A4_GORB4 Length = 480 Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats. Identities = 56/377 (14%), Positives = 123/377 (32%), Gaps = 63/377 (16%) Query: 51 MVDTAQEPRLSRLFSNRVIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLG 110 + + ++ L + P + G E + + + G + + +LG Sbjct: 35 IQRSIRDEIRHNLLNALRAGDDP-WPGIVGFEATVLPQLE--RALIAGHD-----VVMLG 86 Query: 111 PVGGGKSSLAERLKSLMQLVPIYVLSANGERSPVNDHPFCLFNPQEDAQILEKEYGIPRR 170 G GK+ + L L+ + S + +HP+ P + +P Sbjct: 87 ERGQGKTRILRTLVGLLDEW-----TPVIAGSELGEHPYEPITPASIRKAANLLDDLPIE 141 Query: 171 YLGTIMSPWAAKRLHEFGGDITKFRVVKVWPSILQQIAIAKTEPGDENNQDISALVGKVD 230 + R + + + ++ LVG +D Sbjct: 142 W---------RHRSQRYSEKLAT------------------------PDTSVADLVGDID 168 Query: 231 IRKLEH-YAQNDPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEG 289 K+ + DP+ + G + RA++GI+ E+ ++ +L +E + Sbjct: 169 PMKVAEGRSLGDPETIHF-GLIPRAHRGIVAINELPDLAERIQVSMLNVMEERDIQVRGY 227 Query: 290 ISALPFNGIILAHSNESEWVTFRNNKNNEAFLDRV-YIVKVPYCLRISEEIKIYEKLLNH 348 LP + +++A +N ++ + DR ++ Y L + +EI + E+ + Sbjct: 228 TLRLPLDVLVMASANPEDYTN--RGRIITPLKDRFGAEIRTHYPLELDDEIAVIEQEADL 285 Query: 349 SELTHAPCAPGTLETLSRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRD 408 + A E L+RF+ +R P + G S + + A++ Sbjct: 286 T----ASVPTFITEILARFTRYAR-DHP-------SIDQRSGVSARFSIAGAETVAAAAL 333 Query: 409 YAGVDEGMNGLSTRFAF 425 + G R Sbjct: 334 HRAAVAGEEQAVARVVD 350 >UniRef50_A0RXY9 Mg-chelatase subunit n=1 Tax=Cenarchaeum symbiosum RepID=A0RXY9_CENSY Length = 585 Score = 165 bits (417), Expect = 5e-39, Method: Composition-based stats. Identities = 79/506 (15%), Positives = 153/506 (30%), Gaps = 65/506 (12%) Query: 48 EPVMVDTAQEPRLSRLFSNRVIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILY 107 + + ++ R + YP G +D + + + G + + Sbjct: 88 DANYKLPSSREQVRRNLLSMGRGAYPG---IIGFDDDVIPALD--RALLSGHDT-----F 137 Query: 108 LLGPVGGGKSSLAERLK-SLMQLVPIYVLSANGERSPVNDHPFCLFNPQEDAQILEKEYG 166 L+G +G K+ L + +L+ +P+ + ++ P++ + A LE G Sbjct: 138 LIGQMGQAKTRLVRSIAENLLSPIPV-IRNSATNDCPMD------LPAADLADALEGTGG 190 Query: 167 IPRRYLGTIMSPWAAKRLHEFGGDITKFRVVKVWPSILQQIAIAKTEPGDENNQDISALV 226 R +SP + + L E G + V + + + +A + + LV Sbjct: 191 SSRPVFH--VSPESLEVLRERG---LETPVEWLGGARRFRYVLAT------PDTTVRDLV 239 Query: 227 GKVDIRKLEHYAQNDPDAYGY-SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYN 285 G +D K+ Y G L +A GI E+ + LL+ QEG + Sbjct: 240 GSIDAVKVAKKGTEMYRIDSYSPGQLMQAKHGIFCIDELPVLDPRKQVALLSVLQEGRFT 299 Query: 286 GTEGISALPFNGIILAHSNESEWVTFRNNKNNEAFLDRVYI-VKVPYCLRISEEIKIYEK 344 ++ A +N ++ + + E LDR+ V Y I +E+ I Sbjct: 300 TGPYPVYFEPRTMLFATANPVDYTH--SGRVIEPLLDRLASHVHTHYPPTIHDEMMI--- 354 Query: 345 LLNHSELTHAPCAPGTLETLSRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQ 404 ++ + L A A L L+ R N G S + + Sbjct: 355 IMQEARLPPAAVAELPLRALAGVIAGMRNSGQINQE--------RGVSARTGIHGLEILV 406 Query: 405 EYRDYAGVDEGMNGLSTRFAFKILSRVFNFDHVEVAANPVHLFYVLEQQIEREQFPQEQA 464 + + R + + +A Sbjct: 407 SEAERTRPTAAGALPAPRLSD---FHALEQVAKFELTELDDTV-------------ENRA 450 Query: 465 ERYLEFLKGYLIPKYAEFIGKEIQTAYLESYSEYGQNIFDRYVTYADFWIQDQEYRDPDT 524 + E + + + + E+G F + W DP Sbjct: 451 RVFAEIMDAAVGDACLGLLEGTVDEELQLIKDEFGAGTFRS--SQEMQWSGGA---DPYE 505 Query: 525 GQLFDRESLNAELEKIEKPAGISNPK 550 Q+ D L+ LE + A + K Sbjct: 506 RQMADHPLLSKLLESRLEMALEAQAK 531 >UniRef50_Q8TYU9 Mg-chelatase subunit ChlI and Chld (MoxR-like ATPase and vWF domain) n=1 Tax=Methanopyrus kandleri RepID=Q8TYU9_METKA Length = 818 Score = 163 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 64/356 (17%), Positives = 114/356 (32%), Gaps = 58/356 (16%) Query: 59 RLSRLFSNRVIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSS 118 L + ++ + G + Q++S L + + + GP G GK++ Sbjct: 9 ELREVVLEKLGKGEDPLPQILGQREVKIQVLSALIAG--------RHVLIEGPPGIGKTT 60 Query: 119 LAERLKSLMQLVPIYVLSANGERSPVNDHPFCLFNPQEDAQILEKEYGIPRRYLGTIMSP 178 LA + L+ + + P + HP + P Sbjct: 61 LARAVADLLP------PAEVVKGCPFHCHP------------------------KEPVCP 90 Query: 179 WAAKRLHEFGGDITKFRVVKVWPSILQQIAIAKTEPGDENNQDISALVGKVDIRKLEHYA 238 R E + + + I P D L+G +D Y Sbjct: 91 LCRAR-DEDELETETIPGCERFVRIQ---GSPDLTPED--------LLGDIDPIAALEYG 138 Query: 239 QNDPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGI 298 DP A+ G L R N+G++ F E+ + P K+ + LL +E P N + Sbjct: 139 PTDPRAF-TPGKLLRGNRGVVFFDEINRCPEKLQNALLQVLEEQRATIAGYEVDYPANFV 197 Query: 299 ILAHSNESEWVTFRNNKNNEAFLDRVYIVKVPYCLRISEEIKIYEKLLNHSELTHAPCAP 358 ++A N E+ E LDR VK+ Y E +I ++ E Sbjct: 198 MIATMNPHEYAGTEELS--EVLLDRFDTVKMTYPKSKETEKRI---VVERGEDFGVKVPE 252 Query: 359 GTLETLSRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDE 414 LE + +R + ++ + +R G + A + + V E Sbjct: 253 YVLEFIVDLVRATR--DHDDIERPASVRATIGLYERAQTHAALQGRSKVELQDVIE 306 >UniRef50_Q2S060 Magnesium chelatase, subunit ChlI family n=6 Tax=Bacteroidetes RepID=Q2S060_SALRD Length = 524 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 72/490 (14%), Positives = 130/490 (26%), Gaps = 105/490 (21%) Query: 47 GEPVMVDTAQEPRLSRLFSNRVIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQIL 106 E + + L ++ A F G ++ + + A K L Sbjct: 19 KEADYQVRSVKDELRANLMQKLRAGEEVFPGILGYDETVIPRIQNAILA-------KHDL 71 Query: 107 YLLGPVGGGKSSLAERLKSLMQLVPIYVLSANGERSPVNDHPFCLFNPQEDAQILEKEYG 166 LLG G KS L L L+ + E +P+N+ PF Q Sbjct: 72 ILLGLRGQAKSRLIRMLPRLLDDHIPVI-----EDTPLNEDPFNPITKQG---------- 116 Query: 167 IPRRYLGTIMSPWAAKRLHEFGGDITKFRVVKVWPSILQQIAIAKTEPGDENNQDISALV 226 + E G D + W + P + I+ L+ Sbjct: 117 --------------RAIVEERGDD---TPIE--WLPREARYGEKLATP----DTTIADLI 153 Query: 227 GKVDIRKLE----HYAQNDPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEG 282 G +D K YA + + G + R N+GI E+ ++ L +E Sbjct: 154 GDIDPIKAANERLTYADEEVIHF---GIVPRTNRGIFAINELPDLQPRIQVGLFNIMEEQ 210 Query: 283 NYNGTEGISALPFNGIILAHSNESEWVTFRNNKNNEAFLDRVY-IVKVPYCLRISEEIKI 341 + P + +++ +N ++ + DR+ + Y I + I Sbjct: 211 DIQIRGFNVRFPLDVMMVFSANPEDYTS--RGNLVTPLKDRIDSQITTHYPKTIETGMSI 268 Query: 342 YEKLLNHSELT-----HAPCAPGTLETLSRFSILSRLKEPENSSIYSKMRVYDGESLKDT 396 E+ E + + + +R Sbjct: 269 TEQEAWQDRADGAAAVDVHIPRFFREIVEQVAFEAR------------------------ 304 Query: 397 DPKAKSYQEYRDYAGVDEGMNGLSTRFAFKILSRVFNFDHVEVAANPVHLFYVLEQQIER 456 EY D +G+S R L + + N V + Sbjct: 305 ------ESEYIDQT------SGVSVRVTRAALEALISAAERRALLNGEDETTVRVSDLMH 352 Query: 457 EQFPQEQAERYLEFLKGYLIPKYAEFIGKEIQTAYLESYSEYGQNIFDR------YVTYA 510 +E + E I A + EY + D+ Y Sbjct: 353 VA---PAITGKVELVYEGEQEGAEEVALTLIGRAVRALFDEYFPDPSDKEEGRPEYKDVL 409 Query: 511 DFWIQDQEYR 520 D++ Q + Sbjct: 410 DWFAQGRSID 419 >UniRef50_C1ZLH7 Mg-chelatase subunit ChlI n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZLH7_PLALI Length = 475 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 57/424 (13%), Positives = 131/424 (30%), Gaps = 63/424 (14%) Query: 48 EPVMVDTAQEPRLSRLFSNRVIARYPAFEEFYGMEDAIE-QIVSYLKHAAQGLEEKKQIL 106 E + + + + ++ + F G E+ + QIV+ + + + Sbjct: 13 ESGYRPQSVKDEMRKNLIRKLRSGENLFPGIVGYEETVTPQIVNAILS--------RHDM 64 Query: 107 YLLGPVGGGKSSLAERLKSLMQLVPIYVLSANGERSPVNDHPFCLFNPQEDAQILEKEYG 166 LG G GK+ + L SL+ V S ++D P Sbjct: 65 LFLGLRGQGKTRILRSLTSLLDDALPMV-----AGSEIHDDPL----------------- 102 Query: 167 IPRRYLGTIMSPWAAKRLHEFGGDITKFRVVKVWPSILQQIAIAKTEPGDENNQDISALV 226 +S +A R+ GD + + P + I+ L+ Sbjct: 103 -------APLSKYARDRIAV-EGDNCPID----YVGAADRYFEKLATP----DVTIADLI 146 Query: 227 GKVDIRKLEHYAQNDPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNG 286 G++D+ K + + + G + RA++GI E+ K+ L +E + Sbjct: 147 GEIDLVKHASGKELASEDVLHFGLIPRAHRGIFCMNEVPDLSPKIQVGLFNVLEERDIQI 206 Query: 287 TEGISALPFNGIILAHSNESEWVTFRNNKNNEAFLDRV-YIVKVPYCLRISEEIKIYEKL 345 L + I+ +N ++ + DR+ +++ Y L + I ++ Sbjct: 207 RGFPIRLNLDVCIVFSANPEDYTN--RGRIVTPLKDRIGSVIRTHYPLTRELGMSITDQN 264 Query: 346 --LNHSELTHAPCAPGTLETLSRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSY 403 + T E + + L+R N G S++ + ++ Sbjct: 265 AWTDRDSSTQVIVPTFLKEIVEETARLARQSPHVNQ--------ASGVSVRMSIANYENL 316 Query: 404 QEYRDYAGVDEGMNGLSTRFAFKILSRVFNFDHVEVAANPVHLFYVLEQQIEREQFPQEQ 463 + + + R L+ + + ++ + E ++ + Sbjct: 317 VSNAERRAIVQHEKLAVARTCD--LNSMVSSSRGKLELSMSDESGE-EDKLLGRIIDEAT 373 Query: 464 AERY 467 + Sbjct: 374 KNIF 377 >UniRef50_B3QXN8 Magnesium chelatase, subunit ChlI family n=11 Tax=Bacteria RepID=B3QXN8_CHLT3 Length = 526 Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 61/455 (13%), Positives = 118/455 (25%), Gaps = 95/455 (20%) Query: 50 VMVDTAQEPRLSRLFSNRVIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLL 109 + + + ++ R F G E + + K + LL Sbjct: 51 GYRARSVKDEIRENLIAKLKNREDIFPGIMGYERTVIPQLQNAL-------LSKHDIILL 103 Query: 110 GPVGGGKSSLAERLKSLMQLVPIYVLSANGERSPVNDHPFCLFNPQEDAQILEKEYGIPR 169 G G K+ L L +L+ + + S +ND PF + ++L Sbjct: 104 GLRGQAKTKLIRMLSTLLDE-----FTPIIKGSEINDDPFNPLSKFGREKVL-------- 150 Query: 170 RYLGTIMSPWAAKRLHEFGGDITKFRVVKVWPSILQQIAIAKTEPGDENNQDISALVGKV 229 + G R + + + I+ L+G + Sbjct: 151 -HEGDETDIEWLHRSERYSEKLAT------------------------PDVTIADLIGDI 185 Query: 230 DIRKLEH----YAQNDPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYN 285 D K YA + + G + R N+GI E+ ++ LL QE + Sbjct: 186 DPIKAATHRLTYADENVIHF---GLIPRTNRGIFAINELPDLQPRIQVGLLNIMQEKDIQ 242 Query: 286 GTEGISALPFNGIILAHSNESEWVTFRNNKNNEAFLDRVY-IVKVPYCLRISEEIKIYEK 344 +P + I+ +N ++ DR+ + Y + I+I E+ Sbjct: 243 IRGFQVRIPLDIFIIYSANPEDYTN--RGNIITPLKDRIDSQIITHYPKTVEIGIQITER 300 Query: 345 LL-NHSELTHAPCAPGTLETLSRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSY 403 E + + +R Sbjct: 301 EAWTKRSSAKIEVPYYFKEIIEHTAFEAR------------------------------R 330 Query: 404 QEYRDYAGVDEGMNGLSTRFAFKILSRVFNFDHVEVAANPVHLFYVLEQQIEREQFPQEQ 463 EY D +G+S R + + + N V I Sbjct: 331 SEYVDQK------SGVSARLTISAMENLVSNAERRAILNNESDATVRISDIFYAV---PA 381 Query: 464 AERYLEFLKGYLIPKYAEFIGKEIQTAYLESYSEY 498 +E + + A + + +Y Sbjct: 382 VTGKIELVYEGEQEGAQNVSKVLLGKAINQVFKKY 416 >UniRef50_D2RGD6 ATPase associated with various cellular activities AAA_5 n=1 Tax=Archaeoglobus profundus DSM 5631 RepID=D2RGD6_ARCPR Length = 476 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 60/360 (16%), Positives = 115/360 (31%), Gaps = 56/360 (15%) Query: 18 EFTLQEFLTTCRQDRSAYANAAERLLMAIGEPVMVDTAQEPRLSRLFSNRVIARYPAFEE 77 E+ ++ + N E + + + + F E Sbjct: 2 EYIFEDVVIKPSNAPKFVLNGEEVDIWSEEFLNYHSRSIVEYVRDAILEYEKRGEDPFPE 61 Query: 78 FYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMQLVPIYVLSA 137 G E E + + L + + G G GK++ ++ + L+ + V Sbjct: 62 IVGKEVEKEMVKNALMSGS--------NILFRGRKGYGKTTFSKAIAKLLPEKLLAV--- 110 Query: 138 NGERSPVNDHPFCLFNPQEDAQILEKEYGIPRRYLGTIMSPWAAKRLHEFGGDITKFRVV 197 + + P K L ++T Sbjct: 111 --KGCKIGCDPTHP-----------------------SCFSCKKKLLENDVVELTWIPRK 145 Query: 198 KVWPSILQQIAIAKTEPGDENNQDISALVGKVDIRKLEH-YAQNDPDAYGYSGALCRANQ 256 + + GD L+G + I+K+ Y + P+ + G + +A++ Sbjct: 146 WIRIA------------GDPM-MTTRQLIGGISIQKIREGYDLDHPEVF-TPGKILKAHR 191 Query: 257 GIMEFVEMFKAPIKVLHPLLTATQEGNYNGT-EGISALPFNGIILAHSNESEWVTFRNNK 315 GI F E+ P + L +E I + + I++A +N + + + Sbjct: 192 GIAYFDELGAIPSALQTLLHELLEEKQITTPEGDIIPMKIDTIVIASTNPANYKGV--SD 249 Query: 316 NNEAFLDRVYIVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSRFSILSRLKE 375 E LDR+ + + + EEI+I L N S A L+TL+R L+R KE Sbjct: 250 IKEPLLDRMEEIPIGPPETLEEEIEI--GLRNMSLKNGAILPEWHLKTLARIVRLARCKE 307 >UniRef50_A4CLB9 Magnesium chelatase, subunit ChlI family protein n=15 Tax=Bacteroidetes RepID=A4CLB9_9FLAO Length = 498 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 70/530 (13%), Positives = 144/530 (27%), Gaps = 99/530 (18%) Query: 57 EPRLSRLFSNRVIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGK 116 + +R+ + PAFE +G E+ + + + + LLG G K Sbjct: 34 RDEIRANLIDRIRSGKPAFEGVWGYENTVIPQLEQAL-------LSRHHINLLGLRGQAK 86 Query: 117 SSLAERLKSLMQLVPIYVLSANGERSPVNDHPFCLFNPQEDAQILEKEYGIPRRYLGTIM 176 + LA + L+ S ++D P Sbjct: 87 TRLARLMVGLLDEWVP-----EVAGSEIHDDPIRPI------------------------ 117 Query: 177 SPWAAKRLHEFGGDITKFRVVKVWPSILQQIAIAKTEPGDENNQDISALVGKVDIRKLEH 236 S +A + E G W ++ P + ++ L+G VD K + Sbjct: 118 SRYARDTISENGDKT-----EIAWIHRSERFYEKLATP----DVTVADLIGDVDPIKAAN 168 Query: 237 YAQNDPDAYGYS-GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPF 295 + D G + RAN+ I E+ ++ L +EG+ LP Sbjct: 169 LKLSYADDRVIHFGMIPRANRCIFTINELPDLQSRIQVALFNILEEGDVQIRGFKVRLPL 228 Query: 296 NGIILAHSNESEWVTFRNNKNNEAFLDRV-YIVKVPYCLRISEEIKIYEKLLNHSELTHA 354 + + +N ++ DR+ + Y I KI E+ E Sbjct: 229 DLQFVFTANPEDYTN--RGSIVTPLKDRIGSQILTHYPEDIDTARKITEQEAGLDEAQ-- 284 Query: 355 PCAPGTLETLSRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDE 414 + I + + + Sbjct: 285 ---------AAGIGI-----------------------PDSARDLLEQISFEARESEYVD 312 Query: 415 GMNGLSTRFAFKILSRVFNFDHVEVAANPVHLFYVLEQQIEREQFPQEQAERYL--EFLK 472 +G+S R + L + + + N + P + L E + Sbjct: 313 RKSGVSARTSITALENLVSTAERRMLRNG-DTRTTVRLSDFLGVVPAITGKIELVYEGEQ 371 Query: 473 GYLIPKYAEFIGKEIQTAYLESYSEYGQNIFDR-----YVTYADFWIQDQEYR---DPDT 524 + I +++ + + E + + + Y ++ + + D Sbjct: 372 EGADSVALQLIEDAVKSVFATHFPE-IKKLEHKDAQSPYDELVQWFFEGEGLELEDDLPD 430 Query: 525 GQLFDR----ESLNAELEKIEKPAGISNPKDFRNEIVNFVLRARANNSGR 570 G D + L L K + + I+ ++ + + R Sbjct: 431 GAYRDALDSVQPLEDLLRKYQPDLEAEEKYFIKEVILWGLVAHQKLSKNR 480 >UniRef50_Q74N18 NEQ401 n=1 Tax=Nanoarchaeum equitans RepID=Q74N18_NANEQ Length = 330 Score = 129 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 64/364 (17%), Positives = 117/364 (32%), Gaps = 69/364 (18%) Query: 73 PAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMQLVPI 132 F + G + A E ++S L + ++GP G GK++LA+ + ++ + Sbjct: 20 DPFPDIIGNKKAKEDVISCLLSG--------RHFLIIGPPGIGKTTLAKSIAKILPPI-- 69 Query: 133 YVLSANGERSPVNDHPFCLFNPQEDAQILEKEYGIPRRYLGTIMSPWAAKRLHEFGGDIT 192 + P GT Sbjct: 70 ------------------------------ETDIEPYWLEGTPFPTK--------KTKKK 91 Query: 193 KFRVVKVWPSILQQIAIAKTEPGDENNQDISALVGKVDIRKLEHYAQNDPDAYGYSGALC 252 K +K + I P D +VG +D K Y + +++ G + Sbjct: 92 KIEGIKRFVRIQ---GSPDLNPED--------IVGTIDPTKALKYGISI-ESFV-PGKIF 138 Query: 253 RANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEWVTFR 312 RAN+G++ F E+ +AP K+ + LL A +EG + +P + I +A N E+ Sbjct: 139 RANRGVLFFDEINRAPPKIQNLLLQALEEGYVSLGPFDIDVPTDFIFIATMNPKEYEGTT 198 Query: 313 NNKNNEAFLDRVYIVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSRFSILSR 372 EA +DR+ I+ + Y + E K + + P L S + Sbjct: 199 ELS--EALMDRLDIIYLDYPETLEIE-----KQIVLEKGKKLVLFPDEL-LEKMLSFIRE 250 Query: 373 LKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLSTRFAFKILSRVF 432 L+ EN I R G + + ++ ++ + Sbjct: 251 LRNDENLEIKPSPRASIGIYERAQAYALIRNSKKVEWQDIERAFLSVLPSRIKLKPHVAI 310 Query: 433 NFDH 436 D Sbjct: 311 KMDE 314 >UniRef50_D2EEA6 Putative serine protein kinase, PrkA n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EEA6_9EURY Length = 530 Score = 122 bits (305), Expect = 5e-26, Method: Composition-based stats. Identities = 90/570 (15%), Positives = 177/570 (31%), Gaps = 98/570 (17%) Query: 121 ERLKSLMQLVPIYVLSANGERSPVNDHPFCLFNPQEDAQILEKEYGIPRRYLGTIMSPWA 180 K ++ L+ +G++ N++P+ +F ++ L K+ T + Sbjct: 2 RGYKKYSVSHDVFTLNIDGKKCQYNENPYNIFRSILPSKELNKDTRKLMNNKRTEICYHC 61 Query: 181 AKRLHEF--GGDITK--FRVVKVWP-SILQQIAIAKTEPGDEN---NQDISALVGKVDIR 232 L + G + + K++P S + + + P N N + S L D Sbjct: 62 ESNLEKIIKDGKFDEDKINLEKIFPKSSIVEFGDSFLLPSFINVIMNSNRSILAISADKS 121 Query: 233 KLEHYAQNDPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISA 292 KLE +P + + N F + Sbjct: 122 KLE---DINPKVFQLFNNIYDNN-----FSDNLGNK------------------------ 149 Query: 293 LPFNGIILAHSNESEWVTFRNNKNNE--AFLDRVYIVKVPYCLRISEEIKIYEKLLNHSE 350 +P + +IL HSNES ++ ++ E L+R+ V V L SEE+K+ + S Sbjct: 150 VPLDSLILMHSNES-FMELNEDRKRESRPLLERIIRVDVRRNLSYSEEMKVAQ----ESN 204 Query: 351 LTHAPCAPGTLETLSRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYA 410 + P LE +S+ ++LSRL IY+K Y L+ D + + Sbjct: 205 MPIEKVVPKFLEYISKLNVLSRLSF---DLIYNKENQYINNVLELLDYYDSDNLKGLERK 261 Query: 411 GVDEGMNGLSTRFAFKILSRVFNFDHVEVAANPVHLFYVLEQQIEREQFPQEQA------ 464 N L + + E + + + F + Sbjct: 262 MTQTMSNFLGG--ILNTTNAYVSETDSEKSKYLKDAARSFIFDLNDKPFEYKSGWTSGIS 319 Query: 465 --------------ERYLEFLKGYLIPKYAEFIGKEIQTAYLESYSEYGQNIFDRYVTYA 510 ++ + L + KY ++I + + E +N D +T Sbjct: 320 SRSISSILDLNCSSDKLTKHLSFSDVAKYLNKNEEKINDSAI----ETIKNYMDSIITND 375 Query: 511 DFWIQDQEYRDPDTGQLFDRESLNAELEKIEKPAGISNPKDFR--NEIVNFVLRARANNS 568 + G F + A + S K+FR + + N+ Sbjct: 376 IKFDVSYALLSFYFGDNF-KNYTGAITRYFDSIVSPSQGKEFRDLEGYLTEAGKYFDLNT 434 Query: 569 GRN----PNWTSYEKLRTVIEKK-------MFSNTEELLPVISFNAKTSTDEQKKHDD-- 615 ++ E K + S + + V +E+K+ D Sbjct: 435 LKDQVSSFKLDVIPLSTVNYETKFDDLLHFLVSKNKSFIKVEQKYNSFIGEEEKEVDKSS 494 Query: 616 ----FVDRMME--KGYTRKQVRLLCEWYLR 639 ++ ++ +GY + + + Y R Sbjct: 495 ELYYYIKNFLKNIRGYPDESIEDAFKIYKR 524 >UniRef50_C0GH19 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GH19_9FIRM Length = 739 Score = 116 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 47/139 (33%), Gaps = 3/139 (2%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G AN G + E+ P + +L QE G ++P + ++A +N Sbjct: 517 GKFELANGGTIFLDEIGDMPFNMQAKMLRVLQEREIERIGGHHSIPIDVRVIAATNRDLR 576 Query: 309 VTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 + N+ E R+ + + +P ++ +I + + L P + Sbjct: 577 EEIKANRFREDLYYRLDVLSISIPPLREMASDIPVLTQSLIERICKKHHVPPKKVSEEVM 636 Query: 367 FSILSRLKEPENSSIYSKM 385 + R P N M Sbjct: 637 -GVFCRYPWPGNVRELENM 654 >UniRef50_O26878 Putative protease La homolog type 1 n=30 Tax=Archaea RepID=LONH1_METTH Length = 644 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 80/520 (15%), Positives = 147/520 (28%), Gaps = 73/520 (14%) Query: 45 AIGEPVMVDTAQEPRLSRLFSNRVIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQ 104 + E + + ++ G E+A+E I E+++ Sbjct: 15 SYEGNETKKGTGETLSYETSKDIEVP-ERLIDQIIGQEEAVETIKKA--------AEQRR 65 Query: 105 ILYLLGPVGGGKSSLAERLKSLMQLVPIYV----LSANGERSPV---------------- 144 + L+G G GKS LA+ + L+ + + +P+ Sbjct: 66 NVLLIGEPGVGKSMLAKAMAELLPREQLQDILVYPNIEDPNNPLIGAVPAGEGRKIVMNH 125 Query: 145 ------NDHPFCLFNPQEDAQILEKEYGIPRRYLGTIMSPWAAKRLHEFGGDITKFRVVK 198 D LF + IL + + + I + L +F T V K Sbjct: 126 KNKARSQDEKKNLFMMLIISFILVLGFMMNQFLAAIIAAGIIFLALQQFRPR-TTVMVPK 184 Query: 199 VWPSILQQIAIAKTEPGDENNQDISALVGKVDIRKLEHYAQNDPDA-YGYSGALCRANQG 257 + + + D AL+G V + P +G + +AN+G Sbjct: 185 LLVNNEGRQVAPFV---DATGAHAGALLGDVRHDPYQSGGLGTPAHERVEAGMIHKANKG 241 Query: 258 IMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISA----------LPFNGIILAHSNESE 307 ++ E+ +K LLTA QE Y+ T +P + +++A N Sbjct: 242 VLYIDEIGTMKMKTQQELLTAMQEKRYSITGQSETSSGAMVRSQAVPCDFVLVASGNLQV 301 Query: 308 WVTFRNNKNNEAFLDRV----YIVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLET 363 A R+ Y V + + + E + E+ P Sbjct: 302 LEGMH-----PALRSRIRGYGYEVFMKDTMPDTPENRDKLVQFVAQEVEKDGRIPHFSRE 356 Query: 364 LSRFSIL-SRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLSTR 422 I ++ + + S+ K+R G D E + V E LS Sbjct: 357 AVEEIIREAQRRAGKKDSLTLKLRELGGLVRAAGDIAKSRGAELVETEDVIEAKK-LSRT 415 Query: 423 FAFKILSRVFNFDHVEVA----------ANPVHLFYVLEQQIEREQFPQEQAERYLEFLK 472 +I R N + + I + + E + Sbjct: 416 LEQQIADRYIVQKKKYSVFKSEGGEVGRVNGLAIIGD-RSGIILPIAAEAAPAQSKEEGR 474 Query: 473 GYLIPKYAEFIGKEIQTAYLESYSEYGQNIFDRYVTYADF 512 K E + +Q +Y Y + F Sbjct: 475 IIATGKLGEIAREAVQNVSALI-KKYTGTDISNYDIHIQF 513 >UniRef50_A5UNJ6 ATP-dependent protease La, LonB n=2 Tax=Methanobrevibacter smithii RepID=A5UNJ6_METS3 Length = 659 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 90/604 (14%), Positives = 178/604 (29%), Gaps = 77/604 (12%) Query: 76 EEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMQL------ 129 ++ G E++IE I K +++ + L+G G GKS LA+ + ++ Sbjct: 54 DQVIGHEESIETIKKAAK--------QRRNILLIGDPGVGKSMLAKGMAQILPHESLEDI 105 Query: 130 ----------VPIYVLSANGER----------SPVNDHPFCLFNPQEDAQILEKEYGIPR 169 P+ GE + ++ L A I+ + R Sbjct: 106 LIYPNVEDNNHPLIRSVPAGEGKKIVKATKGSAKNHEEKKTLITTFVIAAIVVIGFMYGR 165 Query: 170 RYLGTIMSPWAAKRLHEFGGDITKFRVVKVWPSILQQIAIAKTEPGDENNQDISALVGKV 229 I + + + + ++ A D AL+G V Sbjct: 166 ILEAIIAAALILLISIQIKPKNNNMSPKLLVNNEDKRFA----PFMDATGAHAGALLGDV 221 Query: 230 DIRKLEHYAQNDPDA-YGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTE 288 + P SG + +AN+G++ E+ +K LL+A QE Y T Sbjct: 222 RHDPYQSGGLGTPAHERVESGMIHKANKGVLYIDEIGTMTMKTQQELLSAMQEKKYAITG 281 Query: 289 ----------GISALPFNGIILAHSNESEWVTFRNNKNNEAFLDRVYIVKVPYCLRISEE 338 A+P + +++A N Y V + + + E Sbjct: 282 QSENSSGAMVRSQAVPCDFVLVASGNLQVLEGMH-IAMRSRIRGYGYEVFMKDSMEDTPE 340 Query: 339 IKIYEKLLNHSELTHAPCAPG-TLETLSRFSILSRLKEPENSSIYSKMRVYDGESLKDTD 397 + E+ + P + L + ++ + + ++ K+R G D Sbjct: 341 NRKKLVRFVAQEVKNDGRIPHFAPDALDEIILEAKRRSGKQDALTLKLRDLGGLVRSSGD 400 Query: 398 PKAKSYQEYRDYAGVDEGMNGLSTRFAFKILSRVFNFDHVEVAANP----VHLFYVL--- 450 + + V E S +I R +P V L L Sbjct: 401 VAIEKGADLVTAEHVIEAKK-FSRTLEQQIADRSIKQRKEYSMVHPEGGRVGLVNGLAVI 459 Query: 451 --EQQIEREQFPQEQAERYLEFLKGYLIPKYAEFIGKEIQTAYLESYSEYGQNIFDRYVT 508 I + + E K K E + +Q +Y Y Sbjct: 460 GDRSGIVSPIAAEAAPAQSKEGGKIIATGKLGEIANESVQNVSALI-KKYTNKDISDYDI 518 Query: 509 YADFWIQDQEYRDPDTGQLFDRESLNAELEKIE-----KPAGISNPKDFRNEIVNFVLRA 563 + F + D G A + +E + ++ + R +++ Sbjct: 519 HVQFI----QTYDGVEGDSASVSIATAVISAVEDIPIDQTVALTGSLNVRGDVMPIGGAT 574 Query: 564 ----RANNSGRNPNWTSYEKLRTVIEKKMFSNTEELLPVISFNAKTST--DEQKKHDDFV 617 A SG ++ V+ +K + + E++P + + K D + Sbjct: 575 AKIEAAAESGIKKVLIPKSNMKDVMLEKKYEDMIEIVPTETLSDVLENILISGSKKDRLI 634 Query: 618 DRMM 621 ++M Sbjct: 635 EKMR 638 >UniRef50_A8MC50 ATPase associated with various cellular activities AAA_5 n=6 Tax=Thermoproteaceae RepID=A8MC50_CALMQ Length = 334 Score = 98.4 bits (243), Expect = 7e-19, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 67/189 (35%), Gaps = 13/189 (6%) Query: 220 QDISALVGKVDIRKLEHYAQNDPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTAT 279 + L G +DI + P AY G L ++ ++ E+ + LL Sbjct: 107 MTATELTGDIDIAVALQAGLDHPLAY-IPGPLVLSHGKVLIMDEINRLNPYSQASLLQVL 165 Query: 280 QEGNYNGTEGISALPFNGIILAHSNESEWVTFRNNKNNEAFLDRVYIVKVPYCLRISEEI 339 QE + + +++A SN +E+ EA DR+ +V++ Y + Sbjct: 166 QEHYVYIRGF--RIRSDFLMIATSNPAEYSGVYELS--EALADRMKVVEIQYP-----DR 216 Query: 340 KIYEKLLN-HSELTHAPCAPGTLETLSRF--SILSRLKEPENSSIYSKMRVYDGESLKDT 396 ++ + +L + LT + T L+ + ++ + + + +R Sbjct: 217 ELLKAILEWKANLTLSHIGVKTPSMLTEVLTNFITLMNQDGIIEVSPSIRASIYALANTM 276 Query: 397 DPKAKSYQE 405 +E Sbjct: 277 AKAWIERRE 285 >UniRef50_D2EGD6 Peptidase S16, Lon protease n=2 Tax=Euryarchaeota RepID=D2EGD6_9EURY Length = 641 Score = 96.5 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 73/530 (13%), Positives = 155/530 (29%), Gaps = 94/530 (17%) Query: 61 SRLFSNRVIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLA 120 + + I ++ G EDA+E + +++ + L+G G GKS L Sbjct: 9 FKTTDDIKIPP-KIVDQVIGQEDAVE--------IIKKAAIQRRNVLLVGAPGTGKSMLG 59 Query: 121 ERLKSLMQLVPIYVLSANGERSPVNDHPFCLFNPQEDAQILEKEYGIPRRYLGT------ 174 + L L+ + + A N+ E +I+ + LG Sbjct: 60 QALSQLLPAEKLVDILAFPNPKDENEPTIKSVPAGEGKRIVNQAKARNMSALGGGNNMII 119 Query: 175 --------IMSPWAAKRL------------HEFGGDITKFRVVKVWP-----SILQQIAI 209 ++ + + ++ G + ++ + L + ++ Sbjct: 120 FLGFIVAFFIATYVVSIVVSDQKNPILAAANQISGTLFIITMLIGFLFVLLMYRLGRTSL 179 Query: 210 AKTEPG----------------DENNQDISALVGKVDIRKLEHYAQNDPDA-YGYSGALC 252 T P D AL+G V + P G + Sbjct: 180 KTTVPTPKLLLDNSSAKYAPFIDATGAKEGALLGDVQHDPFQSGGLGTPAHERVVLGDIH 239 Query: 253 RANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISA----------LPFNGIILAH 302 +AN G++ E+ + LLTA QE T +P + I++ Sbjct: 240 KANGGVLFIDEIANLSPETQIQLLTAMQEKKLTITGRSERSAGAMVKTNPVPCDFILVGA 299 Query: 303 SNESEWVTFRNNKNNEAFLDRV----YIVKVPYCLRISEEI--KIYEKLLNHSELTHAPC 356 N + + A R+ Y + + + + E KI + Sbjct: 300 GNPNTLSEM-----SPALRSRIRGYGYEIYMNETMPDTLENRDKIAR-FVAQEISKDKKI 353 Query: 357 APGTLETLSRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGM 416 P + + + +R K S+ K+R G D ++ V + Sbjct: 354 PPFSRDAVIEILNEARRKSNRKESLTLKLRELGGTIRVAGDIAVENKHSVVTRDDVLKSK 413 Query: 417 NGLSTRFAFKILSRVFNFDHVEVAA----------NPVHLFYVLEQQI---EREQFPQEQ 463 + + F +I SR N + + + + + Sbjct: 414 S-YAGSFEQQIASRYIKEKKDYDVIQVKGSRIGRVNGLAVIENSDSGLMLPIEAIVTKSM 472 Query: 464 AERYLEFLKGYLIPKYAEFIGKEIQTAYLESYSEYGQNIFDRYVTYADFW 513 E + + + A+ K + +A ++ YS +D ++ + + Sbjct: 473 RRGSGEIIATGKLGEIAQEAVKNV-SAIVKLYSNKPLTDYDIHIQFLQAY 521 >UniRef50_C9XJV7 Putative sigma-54-dependent transcriptional regulator n=5 Tax=Clostridiales RepID=C9XJV7_CLODC Length = 346 Score = 95.7 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 26/143 (18%), Positives = 51/143 (35%), Gaps = 13/143 (9%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G AN G++ E+ PI++ LL QE + + + I++ +N + Sbjct: 114 GKFELANGGVVFLDEIGDMPIQLQSKLLRVLQEKKFTRIGSNELIDIDVRIISATNRDLF 173 Query: 309 VTFRNNKNNEAFLDRVYIV--KVPYCLRISEEIKIY-----EKLLNHSELTHAPCAPGTL 361 + NK E R+ ++ +VP ++I+I +K + P Sbjct: 174 ELVKENKFREDLYYRLNVIPLEVPPLRERGDDIQILINNFIDKYSRKMKKNVYHIEPDVE 233 Query: 362 ETLSRFSILSRLKEPENSSIYSK 384 + L ++ P N Sbjct: 234 QMLLKY------PWPGNIRELEN 250 >UniRef50_D2RXS1 Sigma 54 interacting domain protein n=7 Tax=Euryarchaeota RepID=D2RXS1_9EURY Length = 731 Score = 93.4 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 62/409 (15%), Positives = 127/409 (31%), Gaps = 53/409 (12%) Query: 71 RYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMQLV 130 ++ G ++A + I+ K +++ + ++G G GKS LA+ + L+ Sbjct: 119 PDRLVDQVIGQDEARDIIIKAAK--------QRRHVMMIGSPGTGKSMLAKAMSQLLPQE 170 Query: 131 PIYVLSANGERSPVNDHPFCLFNPQEDAQILE--KEYGIPRRYLGTIMSPWAAKRLHEFG 188 + + N+ + QI++ KE R + +I+ + + Sbjct: 171 DLQDVLVYHNPDDGNEPKVRTVPAGKGEQIIDAHKEEARKRNQMRSILMWIIVAIILAYA 230 Query: 189 --------GDITKFRVVKVWPSILQQ------------IAIAKTEP-GDENNQDISALVG 227 I +V + + +T P D AL+G Sbjct: 231 ILVVGNILLGILAAGIVWLIFRYTNRGSDAMVPNMIVNNGDKRTAPFEDATGAHAGALLG 290 Query: 228 KVDIRKLEHYAQNDPDAYGY-SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNG 286 V + P G++ +AN+G++ E+ I+ L+TA QEG + Sbjct: 291 DVRHDPFQSGGMETPSHDRVEPGSIHQANKGVLFVDEINTLDIRTQQKLMTAIQEGEFAI 350 Query: 287 TEGISA----------LPFNGIILAHSNESEWVTFRNNKNNEAFLDRV----YIVKVPYC 332 T +P + I++A N A +R+ Y V + Sbjct: 351 TGQSERSSGAMVQTEPVPCDFIMIAAGNLDAMENMH-----PALRNRIKGYGYEVYMEDT 405 Query: 333 LRISEEIKIYEKLLNHSELTHAPCAPGTLETLSRFSIL-SRLKEPENSSIYSKMRVYDGE 391 + + E++ E+ P + IL ++ + + + R G Sbjct: 406 IEDTPEMRRKYARFIAQEVERDGRLPHFTDDAVEEVILEAKRRSGRKNHLTLHFRTLGGL 465 Query: 392 SLKDTDPKAKSYQEYRDYAGVDEGMNGLSTRFAFKILSRVFNFDHVEVA 440 D +E+ V + G S ++ Sbjct: 466 VRVAGDIARSEDREFTTREDVLQAK-GRSRSIEQQLADDYIERRKDYEL 513 >UniRef50_A6UPI7 Peptidase S16, Lon-like protease n=1 Tax=Methanococcus vannielii SB RepID=A6UPI7_METVS Length = 685 Score = 91.5 bits (225), Expect = 9e-17, Method: Composition-based stats. Identities = 74/517 (14%), Positives = 158/517 (30%), Gaps = 86/517 (16%) Query: 61 SRLFSNRVIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLA 120 + + G ++A++ ++S +K+ K+ LLG G GKS + Sbjct: 6 FNTTEDLPEPSPDLITQVIGQDEAVKVVLSAVKN--------KRHALLLGDPGVGKSMMV 57 Query: 121 ERLKSLMQLVPIYVLSANGERSPVN--DHPF------CLF---NPQEDAQILEKEYGIPR 169 + L++ + + R + + P L + E +++++ I Sbjct: 58 KAFGQLLEHSGEFRPYSIIARPNMKNSEKPLVDMIEGHLIEETSEIERPKMMKQPPSIFT 117 Query: 170 RYLGTIMSPWAAK-RLHEFGGDITKFRVVK-------------VWPSILQQIAIA---KT 212 G I S L+ +KF V+ ++ +I + Sbjct: 118 LLFGIIASSLILSYILNNLSDPSSKFAVIAAISVIGSLLVFLILFLNIFGATKASMPNSI 177 Query: 213 EPGDEN----------------NQDISALVGKVDIRKL---EHYAQNDPDAYGYSGALCR 253 P D + + L+G + L P GA+ Sbjct: 178 SPADIKPVILYECKKRPLVRASAYNTTKLLGDIKHCPLGGKPPIGTP-PHKRVILGAIHE 236 Query: 254 ANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGIS----------ALPFNGIILAHS 303 A++GI+ E+ P+ V +LTA Q+ + +P + ++ Sbjct: 237 AHKGILYVDEIKTMPVDVQDYILTALQDKQLAVSGRNPNSSGASVETNPIPCDFTLIMSG 296 Query: 304 NESEWVTFRNNKNNEAFLDRVYI-VKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLE 362 N + R LDR+ V + + ++E + E+ + P T + Sbjct: 297 NMDDVSNLRA-----PLLDRIDYKVVLRNKMENNQENRDKLLQFIVQEIKNNNLRPMTYD 351 Query: 363 TLSRFSILSRLKEPENSSIYSKMRVYDGESLKD-----TDPKAKSYQEYRDYAGVDEGMN 417 L++L + + ++R ++S E + A + E Sbjct: 352 ACCEIVKLAQLLSGSKNKLTLRLRQVSNIIKMANDIAVGKELSESIAELSEQAVIIE--T 409 Query: 418 GLSTRFAFKILSRVFNFDHVEVAANPVHLFYVLEQQIEREQFPQEQAERYLEFLKGYLIP 477 ++ K R+ N + + ++ ++ +E Sbjct: 410 SVAQTTEKKSNKRIMNVVEKFKPSKKAEPKDETHEMKVVKKAVPKKETAIIEL------K 463 Query: 478 KYAEFIGKEIQTAYLESYSEYGQNIFDRYVTYADFWI 514 E I I + + +Y +N F RY + Sbjct: 464 HINEIIDSGIYSMSKQVGIDYLKN-FKRYKNIVSNDV 499 >UniRef50_UPI0001C41E3C ATP-dependent protease S16 family n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C41E3C Length = 724 Score = 91.5 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 56/376 (14%), Positives = 121/376 (32%), Gaps = 45/376 (11%) Query: 76 EEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMQLVPIYVL 135 ++ G E+++E I K +++ + L+G G GKS LA+ + L+ + + Sbjct: 128 DQVIGHEESVETIKKAAK--------QRRNVLLIGDPGVGKSMLAKGMAELLPPEVLEDV 179 Query: 136 SANGERSPVNDHPFCLFNPQEDAQILEKEYGIPRRYLGTI---MSPWAAKRLHEFGGDIT 192 N +P P + + K + ++ +A + G Sbjct: 180 LVYPNGEDSN-YPLIRTVPAGQGKKIVKANKANAKSGDEKKMMITMFATAAIFVLGILYQ 238 Query: 193 KF------RVVKVWPSILQQ-------------IAIAKTEP-GDENNQDISALVGKVDIR 232 + ++ ++ S+ + + P D AL+G V Sbjct: 239 RIFEAIIAALLVIFISMQIKPKANNMSPKLLVNNGDKRFAPFMDATGAHAGALLGDVRHD 298 Query: 233 KLEHYAQNDPDA-YGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTE--- 288 + P SG + +A++G++ E+ +K LL+A QE Y T Sbjct: 299 PYQSGGLGTPAHERVESGMIHKAHKGVLYIDEIGTMSMKTQQELLSAMQEKKYAITGQSE 358 Query: 289 -------GISALPFNGIILAHSNESEWVTFRNNKNNEAFLDRVYIVKVPYCLRISEEIKI 341 A+P + +++A N Y V + + +EE + Sbjct: 359 NSSGAMVRSQAVPCDFVLVASGNIQVLEGMH-IAMRSRIRGYGYGVFMKDYMEDTEENRK 417 Query: 342 YEKLLNHSELTHAPCAPG-TLETLSRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKA 400 E+ + P + L + ++ + +++ ++R G D Sbjct: 418 KLVQFVAQEVKNDGRIPHFATDALDEIILEAKRRAGRKNALTLRLRELGGLVRSSGDVAI 477 Query: 401 KSYQEYRDYAGVDEGM 416 + + V Sbjct: 478 EEGADLVTAEHVVTAK 493 >UniRef50_B8FXK8 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Desulfitobacterium hafniense RepID=B8FXK8_DESHD Length = 666 Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 25/201 (12%), Positives = 60/201 (29%), Gaps = 8/201 (3%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G A++G + E+ + P+ + LL QE P + I+A +N++ + Sbjct: 433 GKFEHAHKGTLFLDEIGEMPMDMQVSLLRFLQERTVTKINSNYPKPVDVRIIAATNKNMY 492 Query: 309 VTFRNNKNNEAFLDRVYIVK--VPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 E R+ +++ +P E+I + + P ++ + Sbjct: 493 DLVGQGLFREDLYYRLNVIEINIPPLRERKEDIPMLAQFFVAELCKQFNILPKKIDEATM 552 Query: 367 FSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLSTRFAFK 426 + L R P N + + + + + S + A Sbjct: 553 ET-LDRHVWPGNVRELKNV-----MEKAVVMTAGDTITPDVLPKQIFQTLEPPSPQPADN 606 Query: 427 ILSRVFNFDHVEVAANPVHLF 447 + + + + Sbjct: 607 PGTEAEELSEKDYILHMLEQH 627 >UniRef50_Q58812 Putative protease La homolog n=5 Tax=Methanocaldococcus RepID=LONH_METJA Length = 649 Score = 89.9 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 57/412 (13%), Positives = 121/412 (29%), Gaps = 71/412 (17%) Query: 61 SRLFSNRVIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLA 120 + ++ G E+A++ ++S +K+ K+ + LLG G GKS + Sbjct: 6 FKTTEELPEPSPRLIDQVIGQEEAVKIVLSAVKN--------KRNVILLGDPGVGKSMIV 57 Query: 121 ERLKSLMQLVPIYVLSANGERSPVNDHPFCLFNPQEDAQILEKEYGIPRRYLGTIMSP-- 178 + + ++ + + P + D + E +P+ S Sbjct: 58 KAVGEILSDFGEFTPYYVIAK-PNLKNMERPIVEVIDGEYKEDSKDMPKLDFKAPSSTTL 116 Query: 179 ----WAAKRLHEFGGDITK-------FRVVKVWPSILQQIAIAK-------------TEP 214 A L E+ + + I + I P Sbjct: 117 LLIMIGAILLSEYLLKYLPQNYLLAAVTITALIVLIFGFVIILTSIMGASRASMPNNLNP 176 Query: 215 GDEN----------------NQDISALVGKVDIRKL---EHYAQNDPDAYGYSGALCRAN 255 D +++ L+G + L P GA+ A+ Sbjct: 177 MDLKPVLLYECKKRPLVRASAYNVTRLLGDIKHCPLGGRPPLGTP-PHKRIILGAIHEAH 235 Query: 256 QGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGIS----------ALPFNGIILAHSNE 305 +GI+ E+ P++V +LTA Q+ + +P + I++ N Sbjct: 236 RGILYVDEIKTMPLEVQDYILTALQDKQLPISGRNPNSSGATVETNPIPCDFILIMSGNM 295 Query: 306 SEWVTFRNNKNNEAFLDRVYI-VKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETL 364 + R LDR+ + + + + E + E+ + P T + Sbjct: 296 DDVYNLRA-----PLLDRIDYKIVLKNKMDNTLENRDKLLQFIVQEIKNNNLNPMTYDGC 350 Query: 365 SRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGM 416 +++ + ++R+ D E D+G Sbjct: 351 CEVVRIAQYLAGSKDKLTLRLRLLANIIKMANDVAMGKDVEELLGNFDDKGE 402 >UniRef50_Q01QL4 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01QL4_SOLUE Length = 457 Score = 88.4 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 44/139 (31%), Gaps = 3/139 (2%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G +A G + E+ + PI + LL QE + + ++A +N Sbjct: 223 GRFEQAQGGTLFLDEIGELPIDLQAKLLRVLQEREVQRLGSSETIKVDIRVVAATNCDLP 282 Query: 309 VTFRNNKNNEAFLDRVYIV--KVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 K E R+ +V ++P R E++ + P L + Sbjct: 283 RRIEEGKFREDLYYRLNVVPLEMPPLRRRLEDVPMLAAHFVEKACRAESIPPKMLTREAL 342 Query: 367 FSILSRLKEPENSSIYSKM 385 +L P N + Sbjct: 343 E-LLCGYSWPGNVRQLENV 360 >UniRef50_C6NWM8 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Proteobacteria RepID=C6NWM8_9GAMM Length = 447 Score = 86.8 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 67/233 (28%), Gaps = 8/233 (3%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 G +A G + E+ + + + LL QE G + + ++A SN Sbjct: 216 PGKFEQAQGGTLLLDEVTEMALPLQAKLLRVLQERELERVGGRRTIRLDVRVIATSNRDL 275 Query: 308 WVTFRNNKNNEAFLDRVYIVK--VPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLS 365 K E R+ ++ VP + E+I + L AP +L+ + Sbjct: 276 RQAVSEGKFREDLYYRLQVIPLCVPPLRQRREDILPLAQRLLAKHCERMAIAPKSLDPEA 335 Query: 366 RFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLSTRFAF 425 + ++L P N DT ++ D G S Sbjct: 336 Q-AVLLSYPWPGNVRELDNALQRAAIFSADTVIRSDDLGLEIRGTLDDARSEGSS----R 390 Query: 426 KILSRVFNFDHVEVAANPVHLFYVLEQQIERE-QFPQEQAERYLEFLKGYLIP 477 IL V + E + + + R L+ + Sbjct: 391 PILEDVRSRQEQETIVSVLRECRGSRNEAARRLGISPRTLRHKLQRYREMGRD 443 >UniRef50_A0LKL9 Sigma-54 factor, interaction domain-containing protein n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LKL9_SYNFM Length = 765 Score = 85.7 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 38/248 (15%), Positives = 76/248 (30%), Gaps = 18/248 (7%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G +A+ G + E+ AP+ V LL QE +P + I+A +N + Sbjct: 484 GFFEQAHGGTIFLDEIGDAPLNVQSRLLRVLQEKEIMKVGADRIIPIDVRIIAGTNRNLR 543 Query: 309 VTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIK-IYEKLLNHSELTHAPCAPGTLETLS 365 K R+ + +P E+I + + L + +P E Sbjct: 544 EAIAEKKFRRDLYHRLNTLPLDIPPLREHCEDIPYVLNRYLEEQYGSRKAFSPNVAEC-- 601 Query: 366 RFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEY-------RDYAGVDEGMNG 418 L R P N + Y S ++ + D G +G Sbjct: 602 ----LRRYGWPGNVRELLNLADYLQISSRNAAVVELEHVPRSLSETFALDRRPARGGSDG 657 Query: 419 LSTRFAFKILSRVFNFDHVEVAANPVHLFYVLEQQIEREQFPQEQAERYLEFLKGYLIPK 478 R + L +E + +H+ ++ + + + F+ + + Sbjct: 658 -DQRDTVRRLLE-SACASMEELSGLLHVLRERKRLLNGRRTLMRELGSRGHFVSEGRMKR 715 Query: 479 YAEFIGKE 486 Y + + Sbjct: 716 YLRLLRND 723 >UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional regulator, Fis family n=12 Tax=Deltaproteobacteria RepID=A1ATK4_PELPD Length = 480 Score = 84.9 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 49/139 (35%), Gaps = 3/139 (2%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 G +ANQG + E+ P+ + +L QE G ++ N I+A +N+ Sbjct: 230 QGKFEQANQGTIFLDEIGDMPLDLQAKILRVLQEHEVTRVGGTQSIAVNVRIVAATNQEL 289 Query: 308 WVTFRNNKNNEAFLDRVYIVKV--PYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLS 365 R + E R+ +V + ++I + T P L + Sbjct: 290 QERVRQREFREDLYYRLNVVPITLAPLRERRDDIPELVRYFLDRTCTELSIPPKQLTPEA 349 Query: 366 RFSILSRLKEPENSSIYSK 384 ++LSR P N Sbjct: 350 M-ALLSRHSWPGNVRELEN 367 >UniRef50_C9KLP4 Nitrogen regulation protein NR n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KLP4_9FIRM Length = 451 Score = 84.9 bits (208), Expect = 9e-15, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 47/147 (31%), Gaps = 2/147 (1%) Query: 244 AYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHS 303 +G SG RAN G + E+ AP+ LL QE + + I+A + Sbjct: 192 RHGASGLFERANHGTIFLDEIGDAPLSFQVKLLRVLQEREIRRVGSAVPIHIDVRIIAAT 251 Query: 304 NESEWVTFRNNKNNEAFLDRVYIVK--VPYCLRISEEIKIYEKLLNHSELTHAPCAPGTL 361 N+ R K E R+ ++ +P E+I + S Sbjct: 252 NQDLKELVRQGKFREDLYYRLSVLPLTLPPLAERKEDIPVLVSTFLQSFFLDMGVRETRA 311 Query: 362 ETLSRFSILSRLKEPENSSIYSKMRVY 388 IL + P N + Y Sbjct: 312 WMEGILPILLQYSWPGNIRELQNVVEY 338 >UniRef50_Q1ZUC7 Formate hydrogenlyase transcriptional activator n=4 Tax=Vibrionaceae RepID=Q1ZUC7_PHOAS Length = 717 Score = 84.5 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 21/139 (15%), Positives = 46/139 (33%), Gaps = 5/139 (3%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G +A++G + E+ P+++ LL A QE + + + I+ +N Sbjct: 468 GRFEQAHKGTLFLDEIGDMPLELQPKLLRALQENEIERVGKNALISVDVRIVVATNVDLL 527 Query: 309 VTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 K R+ + +++P +E+I + K + Sbjct: 528 RRVEEKKFRNDLYYRLNVFPIQIPPLRERAEDIPLLVKHFTRELAKKMGKT--ITAIAAE 585 Query: 367 -FSILSRLKEPENSSIYSK 384 +++S P N Sbjct: 586 DLAVMSVFPWPGNVRELRN 604 >UniRef50_C7DGV1 Peptidase S16, Lon-like protease n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DGV1_9EURY Length = 644 Score = 84.5 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 71/222 (31%), Gaps = 21/222 (9%) Query: 216 DENNQDISALVGKVDIRKLEHYAQNDPDAYGY-SGALCRANQGIMEFVEMFKAPIKVLHP 274 D AL G V L+ P SGA+ +AN+G++ E+ + Sbjct: 206 DATGSKAGALFGDVRHDPLQTGGLGTPAHLRVESGAIHKANKGVLFIDEVSSLDPRSQQE 265 Query: 275 LLTATQEGNYNGTEGISA----------LPFNGIILAHSNESEWVTFRNNKNNEAFLDRV 324 LLTA QE Y T +P + I++A N + A R+ Sbjct: 266 LLTAMQEKKYPITGQSEMSSGALVKTEPVPCDFILVAAGNLQDIQKMH-----PALRSRI 320 Query: 325 ----YIVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSRFSI-LSRLKEPENS 379 Y V + + + + + E+ P + I +R + + Sbjct: 321 RGYGYEVYMDSTMPDTAQNRNMLVQFIAQEIKKDGKIPEFDRSAVEAIIEEARRRAGRKN 380 Query: 380 SIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLST 421 + +R G D ++ +++ V + + Sbjct: 381 RLTLILRDLGGLIRAAGDSAIENKKKFVTAEDVLAAKSVANP 422 >UniRef50_O58221 Pho lon intein n=9 Tax=Archaea RepID=LONH_PYRHO Length = 1127 Score = 83.8 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 40/290 (13%), Positives = 79/290 (27%), Gaps = 27/290 (9%) Query: 149 FCLFNPQEDAQILEKEYGIPRRYLGTIMSPWAAKRLHEFGGDITKFR-VVKVWPSILQQI 207 EK YL + A R+ E + + + ++ Sbjct: 602 LEFIPISLSPAKREKFLREVESYLAAVPESSLAGRIEELREHFNRIKKGERRSFIETWEV 661 Query: 208 AIAKTEPGDENNQDISALVGKVDIRKLEHYAQNDPDAYGY-SGALCRANQGIMEFVEMFK 266 + L+ K P G + RA++G++ E+ Sbjct: 662 VNVTYN----VTTETGNLLANGLFVK-NSGGLGTPAHLRVEPGMIHRAHKGVLFIDEIAT 716 Query: 267 APIKVLHPLLTATQEGNYNGTE----------GISALPFNGIILAHSNESEWVTFRNNKN 316 +K+ LLTA QE + T +P + I++A N Sbjct: 717 LSLKMQQSLLTAMQEKKFPITGQSELSSGAMVRTEPVPCDFILVAAGNLDTIEKMH---- 772 Query: 317 NEAFLDRV----YIVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSRFSIL-S 371 A R+ Y V + + + E + E+ P + + Sbjct: 773 -PALRSRIRGYGYEVYMRTTMPDTPENRRKLVQFVAQEVKKDGRIPHFTRDAVEEIVREA 831 Query: 372 RLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLST 421 + + + ++R G D + ++Y V E + Sbjct: 832 QRRAGRKGHLTLRLRDLGGVVRAAGDIAVRKGKKYVTREDVLEALKLAKP 881 >UniRef50_A0B2I0 GAF modulated sigma54 specific transcriptional regulator, Fis family n=17 Tax=Bacteria RepID=A0B2I0_BURCH Length = 680 Score = 83.4 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 54/174 (31%), Gaps = 13/174 (7%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G L +AN G + E+ P + LL QE N + + I+ ++ Sbjct: 427 GKLLQANGGTLFLDEIGDMPYPLQVRLLRVLQERLVNPLGSTKTIAVDIAIICATHRDLR 486 Query: 309 VTFRNNKNNEAFLDRVY--IVKVPYCLRISEEIKIYEKLLNHSEL-----THAPCAPGTL 361 N+ E R+ +V++P ++ + +K+L AP + Sbjct: 487 EMIAQNRFREDLYYRLNGLVVRLPPLRDRTDLAVVVQKMLQREAFAGPGRPPLSVAPDVM 546 Query: 362 ETLSRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEG 415 E R P N + + D + + + + G Sbjct: 547 ELFV------RCTWPGNFRQLGNLLRTAAAMVDDDGEIRREHLPDDFFDDLRRG 594 >UniRef50_A0LDW4 Nitrogen metabolism transcriptional regulator, NtrC, Fis Family n=3 Tax=Proteobacteria RepID=A0LDW4_MAGSM Length = 504 Score = 83.4 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 30/241 (12%), Positives = 67/241 (27%), Gaps = 5/241 (2%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 G +A G + E+ P++ LL QEG + L + I+A +++ Sbjct: 242 PGHFQKAEGGTLFLDEIGDMPMEAQTRLLRVLQEGTFTLVGSTDILRSDVRIIAATHQDL 301 Query: 308 WVTFRNNKNNEAFLDRVYIV--KVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLS 365 + E R+ ++ VP E+I + + A L + Sbjct: 302 PTAISEGRFREDLFYRLNVIPLHVPTLRSRKEDIPVLSQYFLAKTSKELKVATKRLTQSA 361 Query: 366 RFSILSRLKEPENSSIYSKM--RVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLSTRF 423 +++ P N + R+ + P+ E ++G + Sbjct: 362 MEKLVA-YDWPGNVRELENLIRRLTVLIPEDEIRPEKIELYERTMPKLARNDLSGHEPQE 420 Query: 424 AFKILSRVFNFDHVEVAANPVHLFYVLEQQIEREQFPQEQAERYLEFLKGYLIPKYAEFI 483 S + + + F + + + + L + Sbjct: 421 ERSTESNTSHSYEAILLQDLDTFFATMGGLETSGVYDMVLRKMEAVLIPRVLRQTRGNRV 480 Query: 484 G 484 Sbjct: 481 K 481 >UniRef50_Q5WE88 Transcriptional activator of the acetoin dehydrogenase operon n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WE88_BACSK Length = 647 Score = 83.0 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 24/143 (16%), Positives = 51/143 (35%), Gaps = 11/143 (7%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G +AN G + E+ P+ + LL +E G +P + +++ +N+ Sbjct: 437 GKFEQANGGTIFLDEIGDMPLDLQVHLLRILEERVVTRIGGSVPIPVDVRVISATNKDLK 496 Query: 309 VTFRNNKNNEAFLDRVYIVKV--PYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 + E R+ ++++ P SE+I + + + + +S Sbjct: 497 EAVQKGTFREDLYYRLCVLQMELPPLRERSEDIPVLIQSFLPALCQEFGK-----QMISL 551 Query: 367 ----FSILSRLKEPENSSIYSKM 385 +IL R P N + Sbjct: 552 TRETLTILERYHWPGNIRELKNV 574 >UniRef50_A5I5X3 Sigma-54 dependent transcriptional regulator n=11 Tax=Clostridium RepID=A5I5X3_CLOBH Length = 587 Score = 83.0 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 2/102 (1%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G AN GI+ E+ P+ + +L QE + + ++A +N+ Sbjct: 359 GKFELANNGIIFLDEIGDMPLYLQVKILRVLQERKLVRIGSNHLIDLDIRVIAATNKDLK 418 Query: 309 VTFRNNKNNEAFLDRVYIV--KVPYCLRISEEIKIYEKLLNH 348 + NK E R+ ++ K+P E+I++ ++L Sbjct: 419 KLIKENKFREDLYYRLNVIPLKIPPLRERKEDIELLMEMLIK 460 >UniRef50_Q9UYC6 Pab lon intein n=1 Tax=Pyrococcus abyssi RepID=LONH_PYRAB Length = 998 Score = 82.6 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 60/189 (31%), Gaps = 20/189 (10%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTE----------GISALPFNG 297 G + RA++G++ E+ +K+ LLTA QE + T +P + Sbjct: 567 PGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSELSSGAMVRTEPVPCDF 626 Query: 298 IILAHSNESEWVTFRNNKNNEAFLDRV----YIVKVPYCLRISEEIKIYEKLLNHSELTH 353 I++A N A R+ Y V + + + E + E+ Sbjct: 627 ILVAAGNLDTIEKMH-----PALRSRIRGYGYEVYMRTTMPDTVENRRKLVQFVAQEVKK 681 Query: 354 APCAPGTLETLSRFSIL-SRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGV 412 P I ++ + + ++R G D + ++Y V Sbjct: 682 DGRIPHFTRDAVEEIIREAQRRAGRKGHLTLRLRDLGGVVRAAGDIAVRKGKKYVTREDV 741 Query: 413 DEGMNGLST 421 E + Sbjct: 742 LEALQMAKP 750 >UniRef50_Q74NJ8 NEQ349 n=1 Tax=Nanoarchaeum equitans RepID=Q74NJ8_NANEQ Length = 600 Score = 82.6 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 64/499 (12%), Positives = 128/499 (25%), Gaps = 70/499 (14%) Query: 76 EEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM-------- 127 ++ G + A++ A+ + ++ L L+GP G GKS LA+ + L+ Sbjct: 19 DQIIGQDKAVK--------LAKMAIQNRRHLLLIGPPGTGKSMLAKAMAELLPKEGLEDF 70 Query: 128 --------QLVPIYVLSANGERSPVNDHP----FCLFNPQEDAQILEKEYGIPRRYLGTI 175 + PI GE + + + + + + Sbjct: 71 LAFPNPKDEFQPIIKTVPAGEGKKIVERSKIAALNALKGKNQLTAIIALIALLMPFYFYY 130 Query: 176 MSPWAAKRLHEFGGDITKFRVVKVWPSILQQIAIAKTEP-------------GDENNQDI 222 I + + + ++ + D + Sbjct: 131 TGEKILAAASMIMSSILLVGLSLGFNVMNKRKLLESIPKLLIDNSDKKHAPFVDATGANP 190 Query: 223 SALVGKVDIRKLEHYAQNDPDAY-GYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQE 281 S L G V + P + G + +A++G++ E+ P V + LL A QE Sbjct: 191 SQLFGNVLHDPFQSGGLETPAHHRVVPGLIHKAHKGVLFIDEIATLPWDVQYELLVAMQE 250 Query: 282 GNYNGTEGISA----------LPFNGIILAHSNESEWVTFRNNKNNEAFLDRVY----IV 327 Y P + I++A E A R+ V Sbjct: 251 KKYPIFGRDERSGGSIVRTTPAPCDFILVAAGTEEAIKNMH-----PALRSRIKGNGFEV 305 Query: 328 KVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSRFSI-LSRLKEPENSSIYSKMR 386 + + + E + E+ P I +++ + ++R Sbjct: 306 YMNEDMPDTPENREKLARFVAQEIMRDGKIPHFTRDAVEEIINIAKKLAGREGYLTLRLR 365 Query: 387 VYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLSTRFAFKILSRVFNFDHVEVAANPVHL 446 G D ++Y V E + +I+ R+ Sbjct: 366 ELGGYVRLAGDIAKSKGKKYVTKEDVIEAER-IGQSIEEQIVERIKELRRRYDIVIKEGY 424 Query: 447 FYVLEQQI-----EREQFPQEQAERYLEFLKGYLIPKYAEFIGKEIQTAYLESYSEYGQN 501 I + P + Y + I ++ Sbjct: 425 EIGRANGIGVIGNKGVIIPIDVNVAYGNG--KIITSGILGKIAEQAIKTIEGYVKSVFGK 482 Query: 502 IFDRYVTYADFWIQDQEYR 520 Y Y F +E Sbjct: 483 DIKEYDIYVQFVQTYEEIE 501 >UniRef50_B1JEG3 Two component, sigma54 specific, transcriptional regulator, Fis family n=61 Tax=Proteobacteria RepID=B1JEG3_PSEPW Length = 469 Score = 82.6 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 48/139 (34%), Gaps = 3/139 (2%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G AN G + E+ + V LL QE G +P + I+A + E Sbjct: 238 GKFEFANGGTLFLDEIESMSLDVQVKLLRLLQERVVERLGGNQLIPLDIRIIAATKEDLR 297 Query: 309 VTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 + + R+ + +++P ++I + + + P TL+ R Sbjct: 298 QSADQGRFRADLYYRLNVAPLRIPPLRERGDDILVLFQHFADTASQRHGLPPQTLQPAHR 357 Query: 367 FSILSRLKEPENSSIYSKM 385 ++L R P N Sbjct: 358 -AMLLRHAWPGNVRELQNA 375 >UniRef50_C6DXM3 Sigma-54 interaction domain family protein n=3 Tax=Clostridium RepID=C6DXM3_CLOBO Length = 585 Score = 82.6 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 35/176 (19%), Positives = 59/176 (33%), Gaps = 10/176 (5%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G AN+G + E+ P+ + LL QE + + ++A +N++ Sbjct: 359 GKFELANKGTIFLDEIGDMPLYLQTKLLRVLQERRIIKIGSNKPIDIDVRVIAATNKNLV 418 Query: 309 VTFRNNKNNEAFLDRVYIV--KVPYCLRISEEIKIYEKLLNHSELT-------HAPCAPG 359 NK E R+ ++ +P ++IKI Sbjct: 419 KLIEENKFREDLYYRLNVIPFNIPPLRERIQDIKILVYNFIEKYTKLLDKHFSSIHIDNK 478 Query: 360 TLETLSRFSILSRLKEPEN-SSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDE 414 ET +S ++E EN M DG D+ P + Y E + G E Sbjct: 479 VWETFYNYSWPGNIRELENTIEFMINMLGTDGNLTIDSIPNSVLYNERKIKKGKKE 534 >UniRef50_Q1D5E1 Sigma-54 dependent transcriptional regulator, Fis family n=4 Tax=Myxococcales RepID=Q1D5E1_MYXXD Length = 529 Score = 82.2 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 41/271 (15%), Positives = 79/271 (29%), Gaps = 13/271 (4%) Query: 117 SSLAERLKSLMQLVPIYVLSANGERSPVNDHPFCLFNPQEDAQILEKEYGIPRRYLGTIM 176 +++A ++ + +Q +Y + P P F + + + + Sbjct: 170 TAIASQVSTALQSTSLYQELQRAKEQP--QVPVGYFFNRIIGESPQLQAIYRLVRKAAPT 227 Query: 177 SPWAAKRLHEFGGDITKFRVVKVWPSILQQIAIAKTEPGDENNQDISALVGKVDIRKLEH 236 R G R V V Q I + L G Sbjct: 228 DATVLLRGESGSGKELFARAVHVNGPRRDQPFIKVDCAALPATLIENELFG-------HE 280 Query: 237 YAQNDPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFN 296 + G A+ G + E+ + P+ V LL Q+ + G A+ + Sbjct: 281 RGAFTGADHRVPGKFEAASGGTVFIDEIGELPLPVQGKLLRVIQDREFERVGGTQAVKVD 340 Query: 297 GIILAHSNESEWVTFRNNKNNEAFLDRVYIVKV--PYCLRI-SEEIKIYEKLLNHSELTH 353 I+A ++ + E R+ +V+V P +E+I+ + + Sbjct: 341 VRIVAATHRDLARMVAEGRFREDLYYRIKVVEVVLPPLRERGAEDIERLARHFVAAVARR 400 Query: 354 APCAPGTLETLSRFSILSRLKEPENSSIYSK 384 P L + L R + P N Sbjct: 401 HRLTPPRLSAAA-VERLKRYRWPGNVRELEN 430 >UniRef50_A6TX18 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Alkaliphilus RepID=A6TX18_ALKMQ Length = 593 Score = 82.2 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 31/210 (14%), Positives = 66/210 (31%), Gaps = 15/210 (7%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 SG AN G + E+ P+ + LL QE G +P + I+A +N+ Sbjct: 365 SGKFELANGGTIFLDEIGDMPLHLQTKLLRVLQEQVIEKVGGKDFIPIDARIIAATNKDL 424 Query: 308 WVTFRNNKNNEAFLDRVYIV--KVPYCLRISEEIKIYEKLLN---HSELTHAPCAPGTLE 362 + + R+ ++ +P + E++ I L + +L Sbjct: 425 ENRVLEGEFRQDLFYRINVIPLHIPPLRQRGEDLMILVSYLLNKCNEKLGKYIQEVHP-- 482 Query: 363 TLSRFSILSRLKEPENSSIYSKMRVY-----DGESLKDTDPKAKSYQEYRDYAGV-DEGM 416 F + + P N Y G + + D + + + G+ Sbjct: 483 --GVFDVFMSYQWPGNVRELENTIEYAVNMCSGSIIMERDLPKRLSRRQTESKDESFRGI 540 Query: 417 NGLSTRFAFKILSRVFNFDHVEVAANPVHL 446 + +++ + F + + A Sbjct: 541 TSIQELERKEMIKAIAYFGNTKQAITMAAT 570 >UniRef50_Q2RXL4 Transcriptional regulator, NifA subfamily, Fis family n=6 Tax=Proteobacteria RepID=Q2RXL4_RHORT Length = 733 Score = 81.8 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 45/311 (14%), Positives = 85/311 (27%), Gaps = 24/311 (7%) Query: 88 IVSYLKHAAQGLEE-KKQILYLLGPVGGGKSSLAERLKSLMQLVPIYVLSANG--ERSPV 144 ++ L A++ ++ + LLG V S + +++ + I L E + Sbjct: 311 VLGVLTLASRERDKFTDYNIGLLGEVA---SRICIAVENALAYGEISRLKDQLSRENKQL 367 Query: 145 NDHPFCLFNPQEDAQILEKEYGIPRRYLG--------TIMSPWAAKRLHEFGGDITKFRV 196 + L + GI G G R Sbjct: 368 AKERYYLEEEIRRTEDFGDIIGISPAIRGVLEQVELVADSDSTVLILGETGTGKELIARA 427 Query: 197 VKVWPSILQQIAIAKTEPGDENNQDISALVGKVDIRKLEHYAQNDPDAYGYSGALCRANQ 256 + + ++ I + S L G SG A++ Sbjct: 428 IHMLSQRKKRTMIKVNCAAIPSALLESDLFG-------HEKGAFTGAIAQKSGRFELADR 480 Query: 257 GIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEWVTFRNNKN 316 G + E+ PI + LL A QE G +P + ++A +N Sbjct: 481 GTLFLDEVGDIPIDLQPKLLRALQEREIERVGGHQPIPVDVRMIAATNRDLTGMVEKRLF 540 Query: 317 NEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSRFSILSRLK 374 R+ + + +P E+I + A + +L+ L Sbjct: 541 RGDLYYRLNVFPILIPPLRERREDIPLMADYFMRKTARKMNRAIEAFSAETMDMLLN-LP 599 Query: 375 EPENSSIYSKM 385 P N + Sbjct: 600 WPGNVRELQNV 610 >UniRef50_A6TPV3 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TPV3_ALKMQ Length = 627 Score = 81.8 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 57/172 (33%), Gaps = 8/172 (4%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G A+ G + E+ + P + LL Q ++ G + N I+A +N + Sbjct: 398 GLFEVADGGTLFLDEIGELPSALQVKLLHVIQHRSFYRVGGNEKINVNVRIIAATNRNLE 457 Query: 309 VTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 R + E R+ + + +P + ++I++ K L H A L + Sbjct: 458 EEMRQGRFREDLYYRINVLPIWIPPLRQRKDDIQLLVKKLLHRTCQQAGVEEKLLSAEAL 517 Query: 367 FSILSRLKEPENSSIYSK-----MRVYDGESLKDTDPKAKSYQEYRDYAGVD 413 L + P N M + D L K + Y + Sbjct: 518 LK-LRKYHWPGNIRELENTLERAMHLSDSRILLSGQMMVKVTDSFVQYQYEE 568 >UniRef50_Q3ABV5 Sigma-54 dependent transcriptional regulator n=3 Tax=Bacteria RepID=Q3ABV5_CARHZ Length = 732 Score = 81.8 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 20/139 (14%), Positives = 48/139 (34%), Gaps = 3/139 (2%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G + +A+ G + E+ P+ + LL Q + + + I+A +N+ Sbjct: 509 GKIEQADGGTLFLDEIGDMPLSMQVKLLRFIQNREFERIGSNTPRKVDIRIIAATNQPLA 568 Query: 309 VTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 + + R+ + + +P ++I + + AP + + + Sbjct: 569 KLVKEGRFRMDLYYRLNVFNINIPPLRERRDDIPLLVNRFMNEFCERRKMAPKIVTSEAM 628 Query: 367 FSILSRLKEPENSSIYSKM 385 +IL P N + Sbjct: 629 -NILMNYSWPGNIRELQNV 646 >UniRef50_B6YVP3 Magnesium chelatase, ChlI subunit n=2 Tax=Euryarchaeota RepID=B6YVP3_THEON Length = 640 Score = 81.8 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 56/367 (15%), Positives = 107/367 (29%), Gaps = 68/367 (18%) Query: 75 FEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMQLVPIYV 134 F G E A +++ + G + L G G GKS+L L +++ + + Sbjct: 12 FSAIVGQEKAKLALLAVAVNPLIGG------VLLKGDKGTGKSTLVRALANVLPEIEV-- 63 Query: 135 LSANGERSPVNDHPFCLFNPQEDAQILEKEYGIPRRYLGTIMSPWAAKRLHEFGGDITKF 194 P N +P M +R + + Sbjct: 64 ----VADCPFNCNPKNPL----------------------EMCDSCYERYE----NGEEL 93 Query: 195 RVVKVWPSILQQIAIAKTEPGDENNQDISALVGKVDIRKLEHYAQNDPDAYGYSGALCRA 254 + K ++ + I LVG VD+ + + G L A Sbjct: 94 PIAKRKMRVVD----------LPLSVTIDRLVGTVDVERFLKEGKKALQ----PGILAEA 139 Query: 255 NQGIMEFVEMFKAPIKVLHPLLTATQEG--NYNGTEGISALPFNGIILAHSNESEWVTFR 312 N+G++ E+ + LL A G P I++ N E Sbjct: 140 NRGVLYIDEVNLLDDYIADSLLDAAAMGWNTIEREGISFRHPARFILVGSMNPEE----- 194 Query: 313 NNKNNEAFLDRVYI-VKVPYCLRISEEIKIYEK--LLNHSELTHAPCAPGTLETLSRFSI 369 + LDR + V+V + E I+I ++ + ++ + L+ + Sbjct: 195 -GELRPQILDRFGLCVEVSAPMNPEERIEIVKRVEEFHEDPISFYKKYESEEKKLTERIV 253 Query: 370 LSR--LKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDE--GMNGLSTRFAF 425 +R L + E S K+ + + + + G +S Sbjct: 254 KAREILPKVEISDDLLKL-LAETVVNLGIKTNRAEIATIKTAKAIAALNGRRRVSLEDLE 312 Query: 426 KILSRVF 432 K + Sbjct: 313 KAMELAL 319 >UniRef50_B5YI42 AdnA n=3 Tax=Bacteria RepID=B5YI42_THEYD Length = 324 Score = 81.8 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 32/257 (12%), Positives = 78/257 (30%), Gaps = 26/257 (10%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 G AN+G + E+ P+ + +L QE + G + N I+A +N+ Sbjct: 87 YGRFELANEGTIFLDEIGDMPLHLQVKILRVIQEKTFERIGGTRPIQVNVRIIAATNKDL 146 Query: 308 WVTFRNNKNNEAFLDRVYIVKV--PYCLRISEEIKIYEKLLNHSELTHAP----CAPGTL 361 + + E R+ +V V P E+I + + + P + Sbjct: 147 ENEVKEGRFREDLFWRLNVVPVVIPPLRERKEDIPLLCEYFINKFSHKFGYSLQIKPEVM 206 Query: 362 ETLSRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLST 421 + ++ P N + + + K E Sbjct: 207 QIFLNYT------WPGNVRELENLIERLYVLNEGGNINIKDIPERI-------------- 246 Query: 422 RFAFKILSRVFNFDHVEVAANPVHLFYVLEQQIEREQFPQEQAERYLEFLKGYLIPKYAE 481 RF + D + ++ + L VL++ ++ +++ + Sbjct: 247 RFGENSFQKELIPDDLNPFSSGIDLNEVLKEYEKKLILHALNLHGWIKSRAAKYLNINRT 306 Query: 482 FIGKEIQTAYLESYSEY 498 + ++++ ++ Sbjct: 307 TLIEKMKRLNIKDNENE 323 >UniRef50_C7PLV9 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PLV9_CHIPD Length = 515 Score = 81.8 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 61/219 (27%), Gaps = 28/219 (12%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G A G + E+ + P+ + LL QE G +P N I+A +N + Sbjct: 289 GKFEMAEGGTLFLDEIGELPLDMQAKLLRVIQEKEIERIGGTETIPVNVRIIAATNRTLE 348 Query: 309 VTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 R + + R+Y+ + +P E+I + + + Sbjct: 349 EEVRQGRFRQDLYYRLYVFPIHLPALRERREDIPLLLQ--------------HFARNAAM 394 Query: 367 FSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLSTRFAFK 426 + +P + G L D ++ ++ + Sbjct: 395 -----KYGKPIR-------HIASGSVLALMDYTWPGNIREMEHMVERAVISSDEPQITIA 442 Query: 427 ILSRVFNFDHVEVAANPVHLFYVLEQQIEREQFPQEQAE 465 + + + +P+ E+Q Sbjct: 443 VPGNRKALEADGNSLSPLLTLAETERQTIIRALRYSNGR 481 >UniRef50_A9VKT7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=19 Tax=Bacillus RepID=A9VKT7_BACWK Length = 709 Score = 81.4 bits (199), Expect = 9e-14, Method: Composition-based stats. Identities = 44/254 (17%), Positives = 84/254 (33%), Gaps = 25/254 (9%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G RA+QGI+ E+ + P+ + LL QE + + N I+A +N+S Sbjct: 475 GYFKRADQGILFLDEIGEMPLHLQVKLLRVLQEQEVIPIGSTTPMKINVQIIAATNKSLE 534 Query: 309 VTFRNNKNNEAFLDRVYIV--KVPYCLRISEEIKIY----EKLLNHSELTHAPCAPGTLE 362 + E R+ ++ +VP E++ + + LN + P L Sbjct: 535 KMVESGTFREDLFYRLNVIPLRVPSLRERMEDVPVLAFHFLQQLNEKYNKNYHLTPDALN 594 Query: 363 TLSRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLSTR 422 L +S P N M S D +A+ ++ + TR Sbjct: 595 LLEFYS------WPGNVRELQNMIERLVVSADDPVIEAEFVSKFLTPGYDFNKSKPVITR 648 Query: 423 FAFKILSRVFNFDHVEVAANPVHLFYVLEQQIEREQFPQEQAERYLEFLKGYLIPKYAEF 482 L + ++ + + + + Q + KY + Sbjct: 649 VL--PLQEALHSVEEQLILLAMKQYKTTTKAAKALGISQS-----------SVSRKYQKI 695 Query: 483 IGKEIQTAYLESYS 496 + ++ A + SYS Sbjct: 696 VSEKEIAADIISYS 709 >UniRef50_C9RXL1 GAF modulated sigma54 specific transcriptional regulator, Fis family n=6 Tax=Geobacillus RepID=C9RXL1_GEOSY Length = 643 Score = 81.4 bits (199), Expect = 9e-14, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 50/144 (34%), Gaps = 13/144 (9%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G AN G + E+ + +++ LL QE G +P + I+A +N+ Sbjct: 423 GKFELANGGTLFLDEIGEMSLEMQVLLLRVIQEKEVMRIGGHKVIPVDVRIIAATNKDLR 482 Query: 309 VTFRNNKNNEAFLDRVYIVKV--PYCLRISEEIKIY-----EKLLNHSELTHAPCAPGTL 361 + E R+ ++ + P E+I + E+L + + L Sbjct: 483 REVQKGSFREDLFFRLNVMPIVLPPLRERKEDIPLLVRHFIERLAHKRDKPFPEIRSDFL 542 Query: 362 ETLSRFSILSRLKEPENSSIYSKM 385 E L ++ P N M Sbjct: 543 EALMQY------DWPGNIRELQNM 560 >UniRef50_O26978 Putative protease La homolog type 2 n=7 Tax=Euryarchaeota RepID=LONH2_METTH Length = 501 Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 57/449 (12%), Positives = 118/449 (26%), Gaps = 113/449 (25%) Query: 65 SNRVIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAERLK 124 + I P G ED + I K +++ L L+GP G GKS LA+ + Sbjct: 17 EDVKIPEDPLE-RVIGHEDVMPMIKIAAK--------QRRHLLLVGPPGIGKSLLAQAIS 67 Query: 125 SLMQLVPIYVLSANGERSPVNDHPF---------------------CLFNPQEDAQILEK 163 + + + P + PF L +PQ + + Sbjct: 68 FHLPEPSEEITVVHNPERP--ERPFVEIKNRKEIEDEILEIERAEGELIDPQSAPDAVAE 125 Query: 164 EYGIPRRYLGTIMSP----WAAKRLHEFG---------GDI------------------- 191 G + G S +F GD+ Sbjct: 126 RLGFKCIHCGEYSSAYNSICPRCGGDKFSHIKARRKHIGDLLGMFEMSSGSLSVPQKRVT 185 Query: 192 -------------------TKFRVVKVWPSILQQIAIA-----KTEPGDENN------QD 221 + +V+ ++ + P D Sbjct: 186 TTRIIDGVEEVVIYERVGGEEIKVLDQRALEKRRQIVEEKPRNVIVPLDRKTFVQATGAS 245 Query: 222 ISALVGKV--DIRKLEHYAQNDPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTAT 279 + L+G V D + P GA+ A++G++ E+ + + +A Sbjct: 246 ETELLGDVRHDPYGGHPDLGSQPYERVVPGAIHEAHEGVLFIDEIVHIAG-LQRFIFSAM 304 Query: 280 QEGNYNGTEGISA----------LPFNGIILAHSNESEWVTFRNNKNNEAFLDRVYIVKV 329 Q+ + +P + I + N ++ Y + + Sbjct: 305 QDKTFPIVGRNPQSAGSSVKVDEVPCDFIFVGACNIADLQYILP-PLRSRIQGEGYELLL 363 Query: 330 PYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSRFSI-----LSRLKEPENSSIYSK 384 + ++E + E+ P I +R + ++++ + Sbjct: 364 NTTMPDTDENRAKIAQFVAQEIELDGKIPHARAAAVELLIEEARRRARAVDDVDNALTLR 423 Query: 385 MRVYDGESLKDTDPKAKSYQEYRDYAGVD 413 +R G D Y + ++ Sbjct: 424 LRDLGGVVRMAGDLAVMDGSPYIETRHME 452 >UniRef50_C9XPH0 Putative sigma-54-dependent transcriptional regulator n=8 Tax=Clostridium difficile RepID=C9XPH0_CLODC Length = 681 Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 26/167 (15%), Positives = 58/167 (34%), Gaps = 8/167 (4%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G RA+ G + E+ + V LL QE G +P + I+A +N+ Sbjct: 419 GIFERAHTGTIFLDEIGDISLDVQQRLLRVLQEKEVMRMGGSKIIPIDVRIIAATNKDLK 478 Query: 309 VTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 + E R+ + +++P E+I + K ++ +++ L+ Sbjct: 479 KKIKEGSFREDLYYRINVLHIEIPRLRERKEDIPLISKYFLDEINSNKCFTEESMQALTL 538 Query: 367 FSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVD 413 + + P N + Y +++ + E + + Sbjct: 539 Y------EWPGNVRELKNLIYYIDTIVEEDRVDYEHLPEQFRFEKNN 579 >UniRef50_A6T4B6 Sigma-54 dependent response regulator n=18 Tax=Proteobacteria RepID=A6T4B6_JANMA Length = 481 Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 20/139 (14%), Positives = 47/139 (33%), Gaps = 3/139 (2%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G A G + E+ + P+ + LL +E +P + ++A +N + Sbjct: 272 GLFFYAQGGTLFLDEVAELPLAMQVKLLRVLEEKRIRPVGAEREIPVDVRVIAATNRNVE 331 Query: 309 VTFRNNKNNEAFLDRVYIVK--VPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 + + + R+ +V+ +P +E+I + + + Sbjct: 332 EAVQEGRFRQDLYYRLNVVQLHMPPLRERTEDIPALAEYFVRQLAQQLGVPAKKPD-SAL 390 Query: 367 FSILSRLKEPENSSIYSKM 385 F+ L+ P N + Sbjct: 391 FASLAGYSWPGNVRELRNL 409 >UniRef50_D2L943 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L943_9DELT Length = 482 Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 66/189 (34%), Gaps = 8/189 (4%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G + +AN+G + E+ P+ + +L QE N G +P + I+A +N Sbjct: 232 GKIEQANRGTVFLDEIGDMPLSIQAKILRLLQEQNVERLGGRQVIPVDVRIIAATNRDLE 291 Query: 309 VTFRNNKNNEAFLDRVYIVK--VPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 R + E R+ +V +P +I + + + + Sbjct: 292 AAVRAGQFREDLYYRLKVVTMAMPPLRERPGDIPLLVRYFLARYSREMGQPDPGVSDEAM 351 Query: 367 FSILSRLKEPENSSIY----SKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLS-T 421 ++L+ P N K +++ + D K+ E G E G S Sbjct: 352 -ALLTTQPWPGNVRELGNTVKKALIFNLGAPLGPDEVQKASGEPLRGGGPAEADPGDSLA 410 Query: 422 RFAFKILSR 430 R+ + L+ Sbjct: 411 RYVRRELAS 419 >UniRef50_Q67KD0 Sigma-54-dependent transcriptional regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67KD0_SYMTH Length = 328 Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 36/217 (16%), Positives = 65/217 (29%), Gaps = 9/217 (4%) Query: 237 YAQNDPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFN 296 + +P + G + A+ G + E+ + P + LL QEG G +P + Sbjct: 108 FTGGNPRGHT--GLIQSADGGTLFLDEVSELPYEAQVALLRTLQEGEVVRVGGHRPIPVD 165 Query: 297 GIILAHSNESEWVTFRNNKNNEAFLDRVYIVKVPYCLRISEEIKIYEKLLN--HSELTHA 354 I+A +N R + + R+ ++ V I +++ H Sbjct: 166 VRIVAATNRDLREMVRQGRFRQDLFYRLSVIPVHLPPLRERPRDIIPLIVHGYHRLNRGV 225 Query: 355 PCAPGTLETLSRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDE 414 P P LS + L R P N + +D A Sbjct: 226 PRLP-----LSSWRRLLRYDWPGNVRELLNLVQLAVTLDEDPAALLPLPPLPLSQAEPGP 280 Query: 415 GMNGLSTRFAFKILSRVFNFDHVEVAANPVHLFYVLE 451 + R A + + + L+ LE Sbjct: 281 AGEEAAIRAALDACGGNASAAARRLGMSRSTLYRKLE 317 >UniRef50_Q89NZ8 Transcriptional regulatory protein n=1 Tax=Bradyrhizobium japonicum RepID=Q89NZ8_BRAJA Length = 688 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 49/140 (35%), Gaps = 3/140 (2%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 G AN G++ E+ + P+ + LL +E A P + ++A +N + Sbjct: 454 PGRFEFANGGVLSLDEIGEMPMDLQPYLLRVLEERAVYRLGDSKARPVDVRLVASTNRNL 513 Query: 308 WVTFRNNKNNEAFLDRVYIVK--VPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLS 365 + + R+ +VK +P +++I N T P E + Sbjct: 514 KQEVAEGRFRKDLYFRIGVVKFTIPPLRDRLGDVEILIDHFNRQFATIYSTQPLRFEAAT 573 Query: 366 RFSILSRLKEPENSSIYSKM 385 +L R P N + Sbjct: 574 ME-LLRRYSWPGNVRELRNL 592 >UniRef50_B2A1V9 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A1V9_NATTJ Length = 585 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 46/140 (32%), Gaps = 3/140 (2%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 G AN G + E+ P + LL A QE + + I+A +N + Sbjct: 347 PGKFELANGGTIFLDEIGDMPFDMQVKLLRALQEREVQRIGSERVIDLDVRIIASTNRNL 406 Query: 308 WVTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLS 365 +K E R+ + + VP + ++++ + + + + Sbjct: 407 EQLIAQDKFREDLYYRLNVFNINVPPLREMKDDLEKLINFIIKDLNDEMGLNVNGVSSEA 466 Query: 366 RFSILSRLKEPENSSIYSKM 385 IL+ P N + Sbjct: 467 N-KILNSYHWPGNIRELKNV 485 >UniRef50_C6PP25 Proprionate catabolism activator, Fis family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PP25_9CLOT Length = 620 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 45/139 (32%), Gaps = 4/139 (2%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G A+ G + E+ + PI+ LL QE +P + I+A +N+ Sbjct: 409 GLFTEAHGGTIFLDEIGELPIEFQARLLRVIQEREVRPLGSNKVIPIDVRIIAAANKDLL 468 Query: 309 VTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 R+ I ++VP + E+I I K + E Sbjct: 469 KEIEKGNFRSDLYYRLNILSMRVPTLMERREDIGIIFKHFLKLMCSRFNKVVKISEKA-- 526 Query: 367 FSILSRLKEPENSSIYSKM 385 +IL P N + Sbjct: 527 INILKEYNWPGNIRELENI 545 >UniRef50_A6UCY3 Two component, sigma54 specific, transcriptional regulator, Fis family n=46 Tax=Alphaproteobacteria RepID=A6UCY3_SINMW Length = 549 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 56/177 (31%), Gaps = 4/177 (2%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 SG A+ G + E+ P++V LL A Q+G N +++ +N+ Sbjct: 268 SGKFVDADGGTLFLDEIGDLPLEVQVKLLRAVQQGEIETVGARQPQKVNVRLISATNKDL 327 Query: 308 WVTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLS 365 R + E R+ + + +P R E+I + + + Sbjct: 328 INEVREGRFREDLYYRLNVFPITIPALRRRKEDIPVLVRAFVERFAAEQRLDQRLTVSNG 387 Query: 366 RFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDY--AGVDEGMNGLS 420 ++L+ P N + + + + + + GLS Sbjct: 388 AMALLTSYDWPGNIRQLENAIFRAVVLAEGHELTVRDFPQVATQIPGYIVADRTGLS 444 >UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC n=32 Tax=Proteobacteria RepID=ATOC_ECOLI Length = 461 Score = 80.3 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 32/225 (14%), Positives = 66/225 (29%), Gaps = 24/225 (10%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 G RAN+G + E+ + P+ + LL QE + G + + I+A +N Sbjct: 230 QGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDL 289 Query: 308 WVTFRNNKNNEAFLDRVYIVK--VPYCLRISEEIKI-----YEKLLNHSELTHAPCAPGT 360 + E R+ ++ +P E+I + +K + ++ P Sbjct: 290 QAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMA 349 Query: 361 LETLSRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLS 420 + L+ +S P N S + ++ + G + Sbjct: 350 MSLLTAWS------WPGNIRELSNVIERAVVMNSGPIIFSEDLPPQIRQPVCNAGEVKTA 403 Query: 421 T-----------RFAFKILSRVFNFDHVEVAANPVHLFYVLEQQI 454 R +I+ V + L + Sbjct: 404 PVGERNLKEEIKRVEKRIIMEVLEQQEGNRTRTALMLGISRRALM 448 >UniRef50_C4KCC3 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Thauera sp. MZ1T RepID=C4KCC3_THASP Length = 501 Score = 80.3 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 45/139 (32%), Gaps = 3/139 (2%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 +G A+ G + E+ + P+ + LL +E LP + I+A SN Sbjct: 277 NGLFYYAHGGTLFLDEISELPLAMQTRLLRVLEERKLRPVGSERELPVDVRIIAASNRDL 336 Query: 308 WVTFRNNKNNEAFLDRVYIVKV--PYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLS 365 R + E R+ +V + P +E+I + P L Sbjct: 337 AAEVRAGRFREDLYYRLAVVDIGLPPLRDRTEDIPELMRHFMQQFSVQLGVPPLPLSHEV 396 Query: 366 RFSILSRLKEPENSSIYSK 384 + L+ P N Sbjct: 397 -VNRLAGYTWPGNVRELRN 414 >UniRef50_A9HYL1 Propionate catabolism operon regulator n=3 Tax=Bordetella RepID=A9HYL1_BORPD Length = 640 Score = 80.3 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 67/233 (28%), Gaps = 17/233 (7%) Query: 202 SILQQIAIAKTEPGDENNQDISALVGKVDIRKLEHYAQNDPDAYGYSGALCRANQGIMEF 261 + +A + S L G E A G G A+ G + Sbjct: 378 RRADRPFVAVNCASFPESLLESELFG------YEEGAFTGSRRGGKRGLFEAAHTGTLFL 431 Query: 262 VEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEWVTFRNNKNNEAFL 321 E+ P+ + LL QE +A+P + I+A +++ + + Sbjct: 432 DEIGDMPLPLQSRLLRVLQEREVTRLGATAAIPVDVRIIAATHQPLSDMVAQRRFRQDLY 491 Query: 322 DRVY--IVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSRFS-ILSRLKEPEN 378 R+ ++VP ++I+ + L L ++ + L R P N Sbjct: 492 YRINTLRLEVPPLRERPDDIQPLLETLIDRCLRRLGAPLQAAGLVAPWLPRLRRYAWPGN 551 Query: 379 SSIYSKMR--------VYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLSTRF 423 + Y + D D E + G S R Sbjct: 552 VRELENISERMAVFLMQYPHAADVDHDALRHDCPELFEAGAAVAADEGRSQRD 604 >UniRef50_Q1PVM8 Similar to sigma-54 dependent transcriptional response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PVM8_9BACT Length = 453 Score = 80.3 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 57/186 (30%), Gaps = 7/186 (3%) Query: 236 HYAQNDPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPF 295 Y G A++G E+ P+ LL ++G ++ Sbjct: 219 EKGSFTGALYQRKGKFEYAHRGTFFLDEIGDMPLSAQAKLLRVLEDGMITRIGSNESIEV 278 Query: 296 NGIILAHSNESEWVTFRNNKNNEAFLDRVYIVKV--PYCLRISEEIKIYEKLLNHSELTH 353 + ++A +N+ + K E R+ ++++ P E+I + Sbjct: 279 DVRLIAATNQELGNLIKEGKFREDLYFRLNVIRIKLPPLRERLEDIPLLLDAFIREFSRL 338 Query: 354 APCAPGTLETLSRFSILSRLKEPENSSIY----SKMRVYDGESLKDTDPKAKSYQEYRDY 409 + +R IL R + P N M V + D + ++ D Sbjct: 339 YSKEILQITPEAR-KILLRYQWPGNIRELKNCIESMVVITTKKYLDVEDLPDHIEKKSDE 397 Query: 410 AGVDEG 415 V G Sbjct: 398 MPVSHG 403 >UniRef50_D1RLY9 Transcriptional regulator FleQ n=1 Tax=Legionella longbeachae D-4968 RepID=D1RLY9_LEGLO Length = 468 Score = 79.9 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 39/245 (15%), Positives = 80/245 (32%), Gaps = 16/245 (6%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 G AN G + E+ P+ + LL QE + ++ N I+A ++ + Sbjct: 222 QGRFELANSGTLFLDEIGDMPLPMQVKLLRVLQERCFERVGSNKSIDVNVRIIAATHRNL 281 Query: 308 WVTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKL----LNHSELTHAPCAPGTL 361 + K E R+ + +++P +E+I + + P + Sbjct: 282 EEAIKEGKFREDLFYRLNVFPIEMPPLRERAEDIPLIFNELIARIESENRPIVHLMPDAM 341 Query: 362 ETLSRFSILSRLKEPENSSIYSKMRVYDGESLKD-----TDPKAKSYQEYRDYAGVDEGM 416 LS +S ++E N + G K+ + K+Y + E + Sbjct: 342 AALSEYSWPGNIRELANLVERLTILYPKGILNKEDLPQKIRSEYKTYFDSDTPESEREAL 401 Query: 417 NGLSTRFAFKILSRVFNFDHVEVAANPVHLFYVLEQQIEREQFPQEQAERYLEFLKGYLI 476 + + +S D E ++ Q + + A YL + L+ Sbjct: 402 LRV---ISQGTVSSSEGIDLKEHLVKTE--LALISQALNESDWVVSHAANYLNMRRTTLV 456 Query: 477 PKYAE 481 K + Sbjct: 457 EKMRK 461 >UniRef50_C9XRA6 Probable sigma54-dependent transcriptional regulator n=7 Tax=Clostridium difficile RepID=C9XRA6_CLODC Length = 605 Score = 79.9 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 33/247 (13%), Positives = 77/247 (31%), Gaps = 13/247 (5%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G AN+G++ E+ + + LL QE + + + ++A +N++ Sbjct: 363 GKFELANEGVIFLDEIGDLSMPLQAKLLRVLQERKFARIGSNKLIDLDIRVIAATNKNLL 422 Query: 309 VTFRNNKNNEAFLDRVYIVKV--PYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 K + R+ ++ + P ++I+ +E Sbjct: 423 KLVNEGKFRDDLYYRLNVIPINLPPLRERKDDIEAIMMKFASKYSLELGIQLNKIEENVM 482 Query: 367 FSILSRLKEPENSSIYSKMRVY-------DGESLKDTDPKAKSYQEYRDYAGVDEGMNGL 419 ++L P N Y DG KD P Y + G + Sbjct: 483 -NMLINYNWPGNIRELENAVEYMMNLVGDDGIIYKDMLPL--DILNYYNINGNVCKNKDI 539 Query: 420 STRFAFKILSRVFNFDHVEVAANPVHLFYVLEQQIEREQFPQEQAERYLEFLKGYLIPKY 479 + F I+ + ++ + L + + + + + ++ + L L Y Sbjct: 540 NIIFEDDIVGGIVENQERILSIKELEL-TYINKLLNKYGRDTKTKKKIAKDLGIGLATLY 598 Query: 480 AEFIGKE 486 + ++ Sbjct: 599 RKLEEEQ 605 >UniRef50_UPI00016C4DD7 sigma-54 dependent transcriptional regulator/response regulator n=2 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4DD7 Length = 475 Score = 79.9 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 26/191 (13%), Positives = 60/191 (31%), Gaps = 6/191 (3%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G A++G + E+ P+ + LL QE + G + + ++A +++ Sbjct: 236 GRFELAHKGTLFLDEIGDVPMSMQVKLLRVLQERRFERVGGAEPIEIDVRVVAATHQDME 295 Query: 309 VTFRNNKNNEAFLDRVYIVK--VPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 ++ K E R+ +V+ +P +E+I + + P Sbjct: 296 KLVKDGKFREDLYYRLNVVRIDIPPLRERTEDIPVLVSHFCQKFVRVGQKPPTISPEA-- 353 Query: 367 FSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYR--DYAGVDEGMNGLSTRFA 424 +L++ P N + +D + K G + Sbjct: 354 LDLLTKCPWPGNVRQLENAIERACVTARDGVIRTKDLPPEVGRRPESSAAGKHPFHVDLN 413 Query: 425 FKILSRVFNFD 435 K+ ++ Sbjct: 414 RKLPDQLSELT 424 >UniRef50_B8DJ26 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Desulfovibrio vulgaris RepID=B8DJ26_DESVM Length = 542 Score = 79.5 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 21/140 (15%), Positives = 45/140 (32%), Gaps = 3/140 (2%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 G A G + E+ P+ + LL ++ G + + ++A +N++ Sbjct: 228 PGKFELAQGGTLMLDEIGDMPLAIQPKLLRVVEQKQVERLGGRKPISLDVRLIAATNQNL 287 Query: 308 WVTFRNNKNNEAFLDRV--YIVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLS 365 R E R+ +V +P E+I + + + L + Sbjct: 288 ADRVREKAFREDLYYRLGVAVVHLPPLRSRKEDIPLLAQHVVRRLQGTLGLPVHGLTPAA 347 Query: 366 RFSILSRLKEPENSSIYSKM 385 + L P N + + Sbjct: 348 -VAALCSYDWPGNVRQLANV 366 >UniRef50_C0QE85 FhlA n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QE85_DESAH Length = 492 Score = 79.5 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 48/312 (15%), Positives = 92/312 (29%), Gaps = 34/312 (10%) Query: 120 AERLKSLMQLVPIYVLSANGERSPVNDHPFCLFNPQEDAQILEKEYGIPRRYLGTIMSPW 179 + +L +L+ + + +N + + +H L QE +LE+ G +G +S Sbjct: 132 VRLVGTLSKLISLAIAQSNDKEALEKEH---LAILQERNFLLERNAGALSELIGNSVSWN 188 Query: 180 AAK-------------RLHEFGGDITKFRVVKVWPSILQQIA---IAKTEPGDENNQDIS 223 K + G + V + + + I S Sbjct: 189 RVKDAAAMVAASQTPVLIQGETGTGKEV-VARAVHRLSDRKGGPFIPVNCSAISAGVAES 247 Query: 224 ALVGKVDIRKLEHYAQNDPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGN 283 L G G A+ G + E+ P+++ LL A QE Sbjct: 248 ELFG-------HEKGGFTGAVSSRKGRFELADGGTLFLDEIGDLPLEIQPKLLRALQEKK 300 Query: 284 YNGTEGISALPFNGIILAHSNESEWVTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKI 341 G S + + I+A S+ + R N+ E R+ + +++P +I I Sbjct: 301 LERIGGESTISVDVRIIAASHVDLYTAVRENRFREDLYYRLNVFPIRLPPLRERGSDILI 360 Query: 342 YEKLLNHSELTHAPCAPGTLETLSRFSI--LSRLKEPENSSIYSKMRVYDGESLKDTDPK 399 + A L+ S+ L + P N + + Sbjct: 361 LAEYFTGQIRARAG---HKDLALAPESVDILLQADWPGNVRQLQNTLERAAILSRGGVIR 417 Query: 400 AKSYQEYRDYAG 411 A+ Sbjct: 418 AEHIVADETPED 429 >UniRef50_Q216X1 Sigma-54 factor, interaction region n=2 Tax=Rhizobiales RepID=Q216X1_RHOPB Length = 468 Score = 79.5 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 42/124 (33%), Gaps = 7/124 (5%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 G A+ G + E+ P+ + LL QE + + I+A ++ + Sbjct: 227 PGKFQLAHGGTLFLDEIGDMPLSLQVKLLRVLQEREVEPLGSNQVVKVDVRIIAATSRAL 286 Query: 308 WVTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHS-----ELTHAPCAPGT 360 + K R+ + V +P E+++I L + + P Sbjct: 287 PEMIKEGKFRADLFYRLNVFPVHLPPLRDRKEDLEILASLFSERTAATFDQPMRNVTPQA 346 Query: 361 LETL 364 LE L Sbjct: 347 LELL 350 >UniRef50_B8DQD3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Desulfovibrionales RepID=B8DQD3_DESVM Length = 515 Score = 79.5 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 49/144 (34%), Gaps = 13/144 (9%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G A G + E+ + + + LL A QE G + +P + +LA +N+ Sbjct: 263 GLFEAAEGGTLFLDEVGEMSLPMQVKLLRAVQERTIRRVGGTADIPVDVRLLAATNKDLA 322 Query: 309 VTFRNNKNNEAFLDRVYIV--KVPYCLRISEEIKIYEKLLNHSELTHA-----PCAPGTL 361 + R+ +V ++P E++ + + AP TL Sbjct: 323 AEAAAGRFRHDLYYRLNVVVLRMPPLAERMEDVPLLAQYFAEKAARDTGRPAPHIAPETL 382 Query: 362 ETLSRFSILSRLKEPENSSIYSKM 385 +L+R P N + Sbjct: 383 ------GVLARYPFPGNVRELHNI 400 >UniRef50_C1ZHW1 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZHW1_PLALI Length = 350 Score = 79.5 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 25/178 (14%), Positives = 48/178 (26%), Gaps = 19/178 (10%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G A+ G + E+ + LL QE + + + I+A +N Sbjct: 101 GRFEAAHGGTIFLDEINSMSYTLQVKLLRVLQEQEFERVGDTKTIRVDCRIVAATNRDLL 160 Query: 309 VTFRNNKNNEAFLDRVYIVKV--PYCLRISEEIKIYEKLLNHSELTHAPCA-----PGTL 361 + E R+ +V + P +++ L A P Sbjct: 161 DEIDAGRFREDLYYRLNVVPIYLPPLRDRPDDLA----DLIAHFAKRYAIANSRPVPKVS 216 Query: 362 ETLSRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGL 419 E + ++L P N + ++ V GM + Sbjct: 217 EDV--IAVLRSYAWPGNVRELQ-----NYVERAIVLSSGETLTLDLFPPHVR-GMAPI 266 >UniRef50_Q1JWW3 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JWW3_DESAC Length = 658 Score = 79.1 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 21/141 (14%), Positives = 46/141 (32%), Gaps = 5/141 (3%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 G A+ G + E+ P+ LL Q+ + A+P + ++ +N++ Sbjct: 422 PGKFEMASGGTLLLDEIGDMPLDQQATLLRVLQDKHVTRLGSERAIPVDVRVICATNKNL 481 Query: 308 WVTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTHAPCA-PGTLETL 364 + R+ + + VP ++++ + L A P E Sbjct: 482 LDAVSKGHFRQDLYYRLNVTRIDVPPLRERGRDVELLFRFLLKKISLRLHQARPHVDE-- 539 Query: 365 SRFSILSRLKEPENSSIYSKM 385 + + L P N + Sbjct: 540 AVVTALLHYGWPGNVRELENV 560 >UniRef50_Q2RH79 Sigma54 specific transcriptional regulator with PAS sensor, Fis family n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RH79_MOOTA Length = 562 Score = 79.1 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 25/155 (16%), Positives = 48/155 (30%), Gaps = 3/155 (1%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 G A+ G + E+ P+ + LL QE + G + + I+A +N+ Sbjct: 341 PGKFELADGGTIFLDEVGDLPLSMQPKLLRVLQERAFERVGGRRTIKVDVRIIAATNQDL 400 Query: 308 WVTFRNNKNNEAFLDRVYIV--KVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLS 365 K R+ +V VP +++I + L+ Sbjct: 401 LALEAAGKFRLDLYYRLAVVTLTVPPLRERPGDLEILVAAIIRRLNARYHQTVRGLDPEV 460 Query: 366 RFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKA 400 + + SR P N + + L + Sbjct: 461 Q-RLFSRYSWPGNVRELENVLEHAFNFLDPGEEII 494 >UniRef50_C0ZGM5 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZGM5_BREBN Length = 471 Score = 79.1 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 46/140 (32%), Gaps = 3/140 (2%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 G AN G + E+ + +++ LL +E P + ++A +N S Sbjct: 251 PGKFEAANGGTLFLDEIGEMSLELQVLLLRVLEERKVTRLGSHEEKPLDIRVIAATNRSI 310 Query: 308 WVTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLS 365 +N R+ I +++P E+I T P + + Sbjct: 311 EEDVQNGLFRADLYYRLNILQIRIPPLRERKEDIAALANEFLQQLHTQYAGGPTGICESA 370 Query: 366 RFSILSRLKEPENSSIYSKM 385 +IL + P N + Sbjct: 371 L-AILQQHSWPGNIRELRNI 389 >UniRef50_B0TAR7 Sigma-54-dependent transcriptional activator (Nifa/ntrc family) n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TAR7_HELMI Length = 767 Score = 79.1 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 59/175 (33%), Gaps = 10/175 (5%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G A++G + E+ + + LL QE + G + I+A +N+ Sbjct: 480 GKFELAHKGTLFLDEIGELDKGMQAKLLRVLQEKEISRIGGEETFTVDVKIIAATNQDLE 539 Query: 309 VTFRNNKNNEAFLDRVYIVKV--PYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 + E R+ ++ + P E+I + + A + + + Sbjct: 540 RLVAEGRFREDLYYRLNVIPILLPPLRERKEDIPLLVEHFLQQTGREQGKALRGIHSDAL 599 Query: 367 FSILSRLKEPENSSIYSKM-----RVYDGESLKDTDPKAKSYQEYRDYAGVDEGM 416 +++ P N + + + DG + D+D +Y R EG Sbjct: 600 EALM-HYSWPGNVRELANLIERVVTLSDGPWITDSD--LPTYLRERAAEENHEGR 651 >UniRef50_B4D0Z8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0Z8_9BACT Length = 466 Score = 79.1 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 47/144 (32%), Gaps = 13/144 (9%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G A G + E+ + LL QE ++P N +LA +NE+ Sbjct: 228 GLFEEAEGGTIFLDEVNSMAQPLQTKLLRVLQERQIRRVGDTKSVPINVRVLAATNEALG 287 Query: 309 VTFRNNKNNEAFLDRVYIVKV--PYCLRISEEIKI-----YEKLLNHSELTHAPCAPGTL 361 + E R+ ++ V P ++I + +K + P + Sbjct: 288 DKIKGGNFREDLYYRLAVIPVEMPALRERPDDIPLLVSHFLQKNAAQTGTEAKKIDPKAI 347 Query: 362 ETLSRFSILSRLKEPENSSIYSKM 385 E L+++ + P N Sbjct: 348 EMLAKY------RWPGNVRELENA 365 >UniRef50_C9KM56 Sigma-54 dependent transcriptional regulator/sensory box protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KM56_9FIRM Length = 560 Score = 79.1 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 21/144 (14%), Positives = 48/144 (33%), Gaps = 13/144 (9%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G AN G + E+ + + LL Q+ ++ G + + I+A +N Sbjct: 339 GKFELANHGTIFLDEIGELDKNLQVKLLRVLQQKEFDRVGGEETIHVDVRIIAATNRDLE 398 Query: 309 VTFRNNKNNEAFLDRVYIVKV--PYCLRISEEIKIY-----EKLLNHSELTHAPCAPGTL 361 R + R+ ++ + P ++I + EK+ ++ P + Sbjct: 399 AMVREGTFRDDLYYRLNVIPIILPPLRDRPDDIPLLVEHFIEKISKENKKDVRGITPDAM 458 Query: 362 ETLSRFSILSRLKEPENSSIYSKM 385 + + + P N + Sbjct: 459 QMFMHY------RWPGNVRELENV 476 >UniRef50_C0Z7K7 Putative transcriptional regulator protein n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z7K7_BREBN Length = 455 Score = 79.1 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 31/220 (14%), Positives = 64/220 (29%), Gaps = 6/220 (2%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G + +AN G + E+ + + + LL QE + + ++ +N++ Sbjct: 231 GLIEKANGGTLFLDEIGEMSLSLQVKLLNVLQEKTITPVGSSVSRKVDVKLITATNKNLR 290 Query: 309 VTFRNNKNNEAFLDRVYIV--KVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 + + E R+++V ++P EEI + + +T Sbjct: 291 QMVKEGRFREDLYYRIHVVPLEIPPLRERQEEIPVLVHYFLNVFSQKYCLERQLADTC-- 348 Query: 367 FSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLSTRFAFK 426 + ILS P N + + D Y E G+ Sbjct: 349 YRILSEYDWPGNVRELENVVERLVVTSHDVLITPAQIPRYIHNQEYRE-HKGIKVDHVM- 406 Query: 427 ILSRVFNFDHVEVAANPVHLFYVLEQQIEREQFPQEQAER 466 + + ++ + E Q A R Sbjct: 407 AMQEAMDEVERQLVQRAYEQHKTTTKVAEALGISQPSASR 446 >UniRef50_D2RMP1 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RMP1_ACIFE Length = 596 Score = 79.1 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 24/143 (16%), Positives = 46/143 (32%), Gaps = 5/143 (3%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G N+G++ E+ P+ + LL QE + + ++A +N+ Sbjct: 364 GKFELTNEGVIFLDEIGDMPLYLQSKLLRVLQERKIVRIGSNQLMDIDVRVIAATNKDLK 423 Query: 309 VTFRNNKNNEAFLDRVYIV--KVPYCLRISEEIKIYEKLLNHSELTHA-PCAPGTLETLS 365 R + E R+ ++ +V E+I+ + AP E + Sbjct: 424 KMVREKRFREDLYYRLDVIPLRVAPLRERLEDIEDLTLFYSQRFARKFGKKAPRLTEEV- 482 Query: 366 RFSILSRLKEPENSSIYSKMRVY 388 L + P N Y Sbjct: 483 -MDALKGYRWPGNVRELENAVEY 504 >UniRef50_C1MAF5 Signal-transduction and transcriptional-control protein n=5 Tax=Enterobacteriaceae RepID=C1MAF5_9ENTR Length = 582 Score = 78.8 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 40/115 (34%), Gaps = 2/115 (1%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G AN G + E+ P+ + LL QE + + + I+A +N++ Sbjct: 355 GKFELANGGSLFLDEIGDMPLHLQAKLLRVLQEKAITRVGSNNTINIDVRIIAATNKNIN 414 Query: 309 VTFRNNKNNEAFLDRVYIVK--VPYCLRISEEIKIYEKLLNHSELTHAPCAPGTL 361 NN+ E R+ +V +P +I + + P L Sbjct: 415 AMVENNQFREDLFYRLNVVPLVLPSLRERRADIAVLAQYFADEFSVSYQRPPQKL 469 >UniRef50_D1TMK5 Transcriptional regulator NifA n=1 Tax=Burkholderia sp. CCGE1002 RepID=D1TMK5_9BURK Length = 548 Score = 78.8 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 42/138 (30%), Gaps = 4/138 (2%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G A+ G + E+ LL QE + G + + + ++ +N + Sbjct: 288 GRFELAHGGTLFLDEIGDISPSFQAKLLRVLQEREFERVGGTTPVRVDVRLIVATNRNLE 347 Query: 309 VTFRNNKNNEAFLDRVYIVKV--PYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 R + R+ +V + P E+I + + A E R Sbjct: 348 QMVREGEFRADLYYRINVVSIVLPPLRERREDIPEMAQYFLNRFNRENGRALHFNEEALR 407 Query: 367 FSILSRLKEPENSSIYSK 384 +LS P N Sbjct: 408 --VLSSCYWPGNVRELEN 423 >UniRef50_D0ZE77 Putative uncharacterized protein n=1 Tax=Edwardsiella tarda EIB202 RepID=D0ZE77_EDWTE Length = 463 Score = 78.8 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 56/173 (32%), Gaps = 11/173 (6%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 SG A+ G + E+ + P+ LL +E +P + I+ +N Sbjct: 251 SGQFEAAHGGTLLLDEIGELPLDAQAILLRVLEERTVVRLGDTRGIPIDVRIITATNRDL 310 Query: 308 WVTFRNNKNNEAFLDRVYIVKV--PYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLS 365 R + R+ ++ + P + ++I + S A +E + Sbjct: 311 RQMVRERTFRQDLYYRLNVIPIVLPPLRQRPQDIPLLAHFFLASLGGSRVTA---IEAEA 367 Query: 366 RFSILSRLKEPENSSIYSK-----MRVYDGESLKDTDPKAKSYQEYRDYAGVD 413 + L + P N + DG +L+ D + Q + D Sbjct: 368 M-ARLCAYRWPGNIRQLRNVIERGINFTDGATLRCGDLPPELDQPEEESTSPD 419 >UniRef50_P71229 Hydrogenase-4 transcriptional activator n=45 Tax=Enterobacteriaceae RepID=HYFR_ECOLI Length = 670 Score = 78.8 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 50/139 (35%), Gaps = 3/139 (2%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G A+ G + E+ P+++ LL QE G +P N ++A +N W Sbjct: 433 GRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLW 492 Query: 309 VTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 + + R+ + +++P E+I + K H A + T + Sbjct: 493 QMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEAL 552 Query: 367 FSILSRLKEPENSSIYSKM 385 ++S P N + Sbjct: 553 RQLMS-WDWPGNVRELENV 570 >UniRef50_A4YIH6 Protoporphyrin IX magnesium-chelatase n=1 Tax=Metallosphaera sedula DSM 5348 RepID=A4YIH6_METS5 Length = 600 Score = 78.8 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 53/349 (15%), Positives = 103/349 (29%), Gaps = 64/349 (18%) Query: 75 FEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMQLVPIYV 134 F G E + ++ ++ + + GP G KS+ L +L+ + + Sbjct: 6 FSAIVGQERLKKALL------LVAVDPTITGVLIKGPKGVAKSTAVRALANLLPEIEV-- 57 Query: 135 LSANGERSPVNDHPFCLFNPQEDAQILEKEYGIPRRYLGTIMSPWAAKRLHEFGGDITKF 194 P + P M R+ + Sbjct: 58 ----VADCPFSCDPDH----------------------RERMCNGCRARVDQGQRLPRAR 91 Query: 195 RVVKVWPSILQQIAIAKTEPGDENNQDISALVGKVDIRKLEHYAQNDPDAYGYSGALCRA 254 R +++ + + +VG +DI+++ + + G L A Sbjct: 92 RRMRIV--------------ELPVSATLDRVVGTLDIKRVLKEGERGLE----PGLLALA 133 Query: 255 NQGIMEFVEMFKAPIKVLHPLLTATQEGN--YNGTEGISALPFNGIILAHSNESEWVTFR 312 N+GI+ E+ P +V++ +L A P + I++ N E Sbjct: 134 NRGILYIDEVNLLPDEVVNAILDAAASKFNVVEREGISIIHPADFILIGTMNPEE----- 188 Query: 313 NNKNNEAFLDRVYI-VKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSRF--SI 369 + LDR I V+ E I+I K + E E ++ I Sbjct: 189 -GELRPQLLDRFAISVEAESPGSPEELIEI-SKRVEEFERNPEEFLSKYQEEEAQLREKI 246 Query: 370 LSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNG 418 L + I K+ Y E + ++ A ++G Sbjct: 247 LKAKEILPTVKIPDKLMQYLAEEILSQSSSTRAMIAAVKVAKALAALSG 295 >UniRef50_Q026M7 Transcriptional regulator, NifA subfamily, Fis Family n=4 Tax=Bacteria RepID=Q026M7_SOLUE Length = 706 Score = 78.8 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 31/190 (16%), Positives = 60/190 (31%), Gaps = 8/190 (4%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G A+ G + E+ + P+++ LL QE + + + ++A +N Sbjct: 475 GRFELAHHGTVFLDEIGEIPLELQPKLLRVLQEREFERLGSSRTMRTDARLIAATNRDLA 534 Query: 309 VTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 + R+ + V+VP E+I + + A T+ T + Sbjct: 535 TMVEDRNFRADLFYRLNVFPVQVPALRDRPEDIPLLVRHFVQQFARRMGKAVDTIPTETM 594 Query: 367 FSILSRLKEPENSSIYSKMR-----VYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLST 421 ++L R P N + + G LK + A E + Sbjct: 595 -NVLVRYHWPGNIRELQNLLERAVILSAGPVLKVPLNDLQLQAPAPTTARKTETLESAER 653 Query: 422 RFAFKILSRV 431 R + L Sbjct: 654 RHILEALEAA 663 >UniRef50_B0K4W6 GAF modulated sigma54 specific transcriptional regulator, Fis family n=5 Tax=Thermoanaerobacteraceae RepID=B0K4W6_THEPX Length = 576 Score = 78.8 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 36/103 (34%), Gaps = 2/103 (1%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 G +A G + E+ P+ + LL +E G +P + I+A +N Sbjct: 353 PGKFEQAQGGTLFLDEIGDMPMDIQVYLLRVLEEKKVVRIGGHKEIPLDVRIIAATNSDL 412 Query: 308 WVTFRNNKNNEAFLDRVYIVKVP--YCLRISEEIKIYEKLLNH 348 R K E R+ ++ + +I + + H Sbjct: 413 TKLVREKKFREDLYFRLRVLTIHLCPLRERKSDIPLLFQHFIH 455 >UniRef50_A1HLS8 Putative PAS/PAC sensor protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HLS8_9FIRM Length = 690 Score = 78.8 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 24/174 (13%), Positives = 47/174 (27%), Gaps = 7/174 (4%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 G + +A+ G + E+ + LL QE +P + I+A +N Sbjct: 430 PGLIEQAHGGTIFLDEIGDISPEAQARLLRVIQEKEVMRLGCTRIIPVDVRIIAATNRDL 489 Query: 308 WVTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLS 365 R K + R+++ + VP ++I A L Sbjct: 490 KELVRQQKFRQDLYYRLFVAPLPVPPLRERKQDIPYLTCQFLRENGLSADILDDELADA- 548 Query: 366 RFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGL 419 L P N + Y ++ ++ + Sbjct: 549 ----LVAYDWPGNVRELQSVIQYAAVIADSPAAFRQAVRDRIGGVRERPSRLPV 598 >UniRef50_Q022Z3 Transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q022Z3_SOLUE Length = 705 Score = 78.4 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 25/143 (17%), Positives = 47/143 (32%), Gaps = 13/143 (9%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G AN+G + E+ P+ + LL A QE ++ G +P + ++A +N + Sbjct: 488 GRFEMANRGTLFLDEVGDIPLDLQPKLLRALQEKSFERLGGTKTIPIDVRLVAATNRNLT 547 Query: 309 VTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIY-----EKLLNHSELTHAPCAPGTL 361 + R+ + + E+I I +K P L Sbjct: 548 QMMGDKLFRSDLYYRLKVFPITTSPLRDHPEDIPILARHFMQKYAREMGKQIDTIPPDAL 607 Query: 362 ETLSRFSILSRLKEPENSSIYSK 384 + L ++ P N Sbjct: 608 QALVKW------PWPGNVRELEN 624 >UniRef50_B9M8I2 Sigma54 specific transcriptional regulator, Fis family n=24 Tax=cellular organisms RepID=B9M8I2_GEOSF Length = 587 Score = 78.4 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 35/219 (15%), Positives = 67/219 (30%), Gaps = 6/219 (2%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G RAN G + E+ P LL QEG + ++A +N Sbjct: 324 GRFERANGGTLFLDEIGDLPFSAQAKLLRVLQEGEIERIGDHKTRKVDVRLVAATNVDLR 383 Query: 309 VTFRNNKNNEAFLDRVY--IVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 + + R+ + +P E+I + K ++ Sbjct: 384 QLVKEGRFRSDLYYRLNAFQINIPPLRERKEDIPLLAKRFLEKYSAIHGKKLRGFTDKAK 443 Query: 367 FSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMN-GLSTRFAF 425 ++LS + P N M + G L + + + ++ +G + G+ GL + Sbjct: 444 RALLS-YQWPGNIREMQNM-IERGVILAPSGTRIE-LEQMFSASGEEHGLEIGLDNNGSL 500 Query: 426 KILSRVFNFDHVEVAANPVHLFYVLEQQIEREQFPQEQA 464 + D E N V +E + + Sbjct: 501 GANGWDYGKDLCEAVFNGVMTLDQVEAMLIETAVAKSSG 539 >UniRef50_A1K1I4 Sigma-54 dependent response regulator n=1 Tax=Azoarcus sp. BH72 RepID=A1K1I4_AZOSB Length = 451 Score = 78.4 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 22/142 (15%), Positives = 44/142 (30%), Gaps = 9/142 (6%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 +G A+ G + E+ + P+ + LL +E +P + +LA +N Sbjct: 239 NGLFHYAHGGTLFLDEIGELPLALQSRLLRVLEERKVRPVGTEQEVPVDVRVLAATNRDL 298 Query: 308 WVTFRNNKNNEAFLDRVYIV--KVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLS 365 + E R+ ++ VP +E++ P + Sbjct: 299 RAEVAACRFREDLFYRLEVITLTVPPLRERAEDVPALAAAFMQQLAMQLGLPPLLISPE- 357 Query: 366 RFSILSRL---KEPENSSIYSK 384 + +RL P N Sbjct: 358 ---VSARLMAHPWPGNVRELRN 376 >UniRef50_B8FV05 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfitobacterium hafniense DCB-2 RepID=B8FV05_DESHD Length = 687 Score = 78.4 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 25/175 (14%), Positives = 55/175 (31%), Gaps = 11/175 (6%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 G + AN G + E+ P+++ LL +E G +P + ++A +N++ Sbjct: 465 PGKIELANGGTLFLDEIGDMPLEIQPVLLRVLEEKRVTRLGGSRGIPVDFRVIAATNKNL 524 Query: 308 WVTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTH-APCAPGTLETL 364 + + E R+ I + +P ++ + + P + Sbjct: 525 SLMVKEKTFREDLYFRLSIFKITIPPLRERDHDVILLAEYFIEDISKKLMSEVPKL--SP 582 Query: 365 SRFSILSRLKEPENSSIYSKMRVY------DGESLKDTDPKAKSYQEYRDYAGVD 413 + + + P N VY +G P + +Y Sbjct: 583 ASYQKIKEYSWPGNIRQLQNAMVYGVNMSTNGVIELSNLPDEMTSNDYFRTKVNT 637 >UniRef50_A0KL56 Formate hydrogenlyase transcriptional activator n=5 Tax=Gammaproteobacteria RepID=A0KL56_AERHH Length = 709 Score = 78.4 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 20/139 (14%), Positives = 47/139 (33%), Gaps = 3/139 (2%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G RA++G + E+ P+ + LL QE + + + ++A +N Sbjct: 462 GRFERAHKGTLFLDEVGDMPLDLQPKLLRVLQEHELERVGNSNPIAIDVRLVAATNCDLL 521 Query: 309 VTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 +N + R+ + +++P E+I + ++ + Sbjct: 522 SMVKNKRFRSDLYYRLNVFPIELPPLRERREDIPLLVNFFIKKIAKRMRRTITSIPADAM 581 Query: 367 FSILSRLKEPENSSIYSKM 385 ++S L N + Sbjct: 582 KMLVS-LPWYGNIRELENI 599 >UniRef50_C7PQF6 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PQF6_CHIPD Length = 1082 Score = 78.4 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 44/137 (32%), Gaps = 3/137 (2%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G AN G + E+ + P+ + LL A QE G S + + I+A +N + Sbjct: 851 GKFELANHGTLFLDEIGEMPLDLQVKLLRAIQEREIERIGGKSTIKTDVRIIAATNRNLQ 910 Query: 309 VTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 + R+ + + +P E+I + L + + Sbjct: 911 KEVAEGRFRSDLYYRLNVFPIVLPPLRDRKEDISLLAAHFIERFARSTGRKNIKLSSTAM 970 Query: 367 FSILSRLKEPENSSIYS 383 L+ P N Sbjct: 971 KQ-LTAYNWPGNVRELE 986 >UniRef50_Q24RP4 Putative uncharacterized protein n=1 Tax=Desulfitobacterium hafniense Y51 RepID=Q24RP4_DESHY Length = 588 Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 60/166 (36%), Gaps = 5/166 (3%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G + +AN G + E+ P+++ LL +E G ++P + ++ +N+ Sbjct: 352 GKIEQANGGTLFLDEIGDMPLELQAVLLRVIEEKKVKRVGGNRSIPVDFRLITATNKDLL 411 Query: 309 VTFRNNKNNEAFLDRVY--IVKVPYCLRISEEI-KIYEKLLNHSELTHAPCAPGTLETLS 365 RNN+ E R+ + +P +I + E + P +L + Sbjct: 412 KLTRNNQFREDLYYRIATFKICIPPLRERGGDILHLAEHYIKLYAQKQKIRVP-SLSKTA 470 Query: 366 RFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAG 411 ++ +L + P N +Y K+ + + + Sbjct: 471 KYMLL-KYDWPGNVRQLQNAVLYAVTMAKNGQIRPEDFPSEIVLEN 515 >UniRef50_B8F9K7 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8F9K7_DESAA Length = 464 Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 28/186 (15%), Positives = 56/186 (30%), Gaps = 8/186 (4%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G AN+G + E+ P + LL Q+ + + + ++A +N Sbjct: 231 GRFELANKGTLFLDEVGDIPADIQVKLLRVLQDKTFERVGAQEPIHSDFRLVAATNRDLK 290 Query: 309 VTFRNNKNNEAFLDRVYIV--KVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 R K E R+ ++ P E+I + + TL + Sbjct: 291 DLVRKGKFREDLFYRLNVIGMTTPALREHPEDIPLLISHFLKRYGQVGGRSIKTLSMHAM 350 Query: 367 FSILSRLKEPENSSIYSK-----MRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLST 421 I+ + P N + DG ++ D + + ++ G Sbjct: 351 -KIMQEYRWPGNVRQLENAIESAAAMCDGSMIRTADLPLEITAPQSEDPLREDAYRGTLP 409 Query: 422 RFAFKI 427 +I Sbjct: 410 EVVERI 415 >UniRef50_A9FB29 Sigma-54 dependent DNA-binding response regulator n=15 Tax=Bacteria RepID=A9FB29_SORC5 Length = 461 Score = 77.6 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 57/169 (33%), Gaps = 10/169 (5%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 SG RA+ G + E+ + PI + LL A QE LP + ++A +N Sbjct: 228 SGLFARAHGGTLFLDEIGELPIGLQPKLLRALQERVVRPVGADEELPVDVRLIAATNRDL 287 Query: 308 WVTFRNNKNNEAFLDRVYIVKV--PYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLS 365 + E R+ +V V P ++ + + T L + Sbjct: 288 ETAIEERRFREDLYYRINVVHVDLPPLRSRGADVLLLAQHFLEHFATVKARPIQGLSAPA 347 Query: 366 RFSILSRLKEPENSSIYSK-------MRVYDGESLKDTDPKAKSYQEYR 407 +++ P N + YD ++ D K ++Y+ Sbjct: 348 AEKLMA-YAWPGNVRELQNCIERAVALARYDHITVDDLPEKIRTYRRSH 395 >UniRef50_B6FY43 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6FY43_9CLOT Length = 590 Score = 77.6 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 55/173 (31%), Gaps = 7/173 (4%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 SG A G + E+ P+ + LL QE G + N I++ +N+ Sbjct: 366 SGIFELAKDGTVFLDEIADLPLNMQAKLLRVLQEKEVRRVGGEKTIKINPRIISATNKDL 425 Query: 308 WVTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLS 365 + K E R+ + +K+P E+I I +L + Sbjct: 426 EKMVKEEKFREDLYYRLNVVEIKIPPLRERKEDIGILLHYFLDEMCRENGKPRMSLSKEA 485 Query: 366 RFSILSRLKEPENSSIY----SKMRVYDGESLKDTDPKAKSYQEYRDYAGVDE 414 + IL + N M V S+ + D E + DE Sbjct: 486 -YKILENYRWKGNIRELKNTVENMVVLSDSSIIEKDAIPSYIVESAKNSTDDE 537 >UniRef50_B5UK27 Sigma-54 dependent transcriptional regulator n=10 Tax=Bacillus cereus group RepID=B5UK27_BACCE Length = 677 Score = 77.6 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 32/236 (13%), Positives = 63/236 (26%), Gaps = 10/236 (4%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G +AN G + E+ +K+ LL QE G +P + I+A +N+ Sbjct: 418 GLFEQANGGTIFLDEIGDISLKLQARLLRVLQEKEIMRVGGSQIIPIDVRIIAATNKDLL 477 Query: 309 VTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 + N E R+ + + +P +I++ K +E L Sbjct: 478 KMIQENMFREDLYHRLKVLFIHLPELRARRNDIELLAKHFVALSDPKVKIEQELIEELQG 537 Query: 367 FSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLSTRFAFK 426 + N Y + K Sbjct: 538 Y------PWYGNVRELKNTIDYMLAVRTGNQITKNDLPNQHYFQKPPHKKTNSDQAENIK 591 Query: 427 ILSRVFNFDHVEVA--ANPVHLFYVLEQQIEREQFPQEQAERYLEFLKGYLIPKYA 480 S N E + + + I R ++ E ++ + + + Sbjct: 592 PFSSNSNALDQESLFILTLIMNYEEKGKAIGRRIISEKSQEVEMKLTEAQVRHRLN 647 >UniRef50_D0LSM1 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LSM1_HALO1 Length = 557 Score = 77.6 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 45/139 (32%), Gaps = 3/139 (2%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G A G + E+ + P+++ LL QEG Y + I+A +N Sbjct: 317 GWFEAAEGGTLFLDEIAELPLELQGKLLRVLQEGRYARVGETRTRDADVRIVAATNRDLK 376 Query: 309 VTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 + E R+ + ++VP + ++ L P TL+ + Sbjct: 377 EEVAAGRFREDLFYRLNVFPIRVPPLRDRAGDMPALAGHLLAQICRAMKVPPVTLDNE-Q 435 Query: 367 FSILSRLKEPENSSIYSKM 385 L P N + Sbjct: 436 LGRLQAHTWPGNVRELRNV 454 >UniRef50_B0K3D1 Sigma-54 factor, interaction domain-containing protein n=9 Tax=Thermoanaerobacteraceae RepID=B0K3D1_THEPX Length = 526 Score = 77.6 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 40/255 (15%), Positives = 71/255 (27%), Gaps = 27/255 (10%) Query: 144 VNDHPFCLFNPQEDAQILEKEYGIPRRYLGTIMSPWAAKRLHEFGGDITKFRVVKV-WPS 202 +D F + + K+ + + L G + + + S Sbjct: 204 FHDDSFFTIPGKNPRFLEIKDLVRQIAVTDSTV------LLQGESGTGKELFARYIHYLS 257 Query: 203 -ILQQIAIAKTEPGDENNQDISALVGKVDIRKLEHYAQNDPDAYGYSGALCRANQGIMEF 261 IA +N S L G D P G AN G + Sbjct: 258 PRKNHPFIAINCAAIPDNLLESELFGYEDGSFTGARRGGKP------GKFELANGGTIFL 311 Query: 262 VEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEWVTFRNNKNNEAFL 321 E+ P+++ LL + + P + I+A +N+ E Sbjct: 312 DEIGDMPLQLQAKLLRVLENRQVERIGATVSRPIDVRIIAATNKDLKELIDAKLFREDLF 371 Query: 322 DRVYI--VKVPYCLRISEEIKI----YEKLLNHSELTHAPCA-PGTLETLSRFSILSRLK 374 R+ + V +P ++I + Y K + + P +E IL Sbjct: 372 FRLNVFPVFIPPLRERRDDILLLLDFYLKNICLEQDKPFKIFSPEAIE------ILQNYD 425 Query: 375 EPENSSIYSKMRVYD 389 P N + Y Sbjct: 426 WPGNIRELKNVVTYA 440 >UniRef50_C6NXT3 Sigma-54 dependent transcriptional regulator n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NXT3_9GAMM Length = 536 Score = 77.6 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 47/140 (33%), Gaps = 3/140 (2%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 G RAN G + E+ PI LL QEG + G L + I+ +NE+ Sbjct: 302 HGFFERANGGTLFLDEINSLPIAAQVKLLRVVQEGEFERVGGEEPLKVDVRIIVATNENL 361 Query: 308 WVTFRNNKNNEAFLDRVYIVKV--PYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLS 365 + RN K R+ +V + P +++ + L + + Sbjct: 362 DLLVRNGKFRRDLYYRLNVVHIHLPPLRMRPDDMSALVDHILRRLSEKHHHPIRILSSRA 421 Query: 366 RFSILSRLKEPENSSIYSKM 385 I + P N + Sbjct: 422 WKQIFA-YDWPGNVREMENL 440 >UniRef50_A3EU11 Putative sigma54 specific transcriptional regulator, Fis family n=2 Tax=Leptospirillum sp. Group II RepID=A3EU11_9BACT Length = 463 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 31/217 (14%), Positives = 74/217 (34%), Gaps = 13/217 (5%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G + AN G + E+ P ++ LL Q G + +P + I+A ++ Sbjct: 245 GHIEAANHGTIMLDEIGDMPFELQVNLLRVLQFGKIQRVGSSAEIPVDVRIIAATHIDLE 304 Query: 309 VTFRNNKNNEAFLDRVYIVKV--PYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 R + E R+++++V P +I + + + Sbjct: 305 KACREGRFREDLYYRLHVLRVSLPPLRDRGADISLLARYFCKRFSAEYGATSKPFSAEAL 364 Query: 367 FSILSRLKEPENS-SIYSKMR----VYDGESLKDTDPKAKSYQEYRDYAG-----VDEGM 416 I + P N + +K++ + +G ++ D + ++ +G + E Sbjct: 365 EVIQA-YSWPGNVRELINKIKSAVLMSEGPLIEPRDLQLENMPHPAKKSGKTLREIREIT 423 Query: 417 NGLSTRFAFKILSRVFNFDHVEVAANPVHLFYVLEQQ 453 + R + + E+ L+ +L++ Sbjct: 424 ERETLRETLQKFENNVSRTARELGVTRTTLYDLLKKH 460 >UniRef50_Q188N1 Putative arginine utilization sigma-54 dependent regulatory protein n=9 Tax=Clostridium difficile RepID=Q188N1_CLOD6 Length = 466 Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 2/105 (1%) Query: 244 AYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHS 303 A G +AN+G + E+ PI + LL QEG G +P + I+A + Sbjct: 229 AIDRPGLFEQANKGTLLLDEINSMPIMLQAKLLRVLQEGYVRRVGGTKDIPIDVRIIATT 288 Query: 304 NESEWVTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLL 346 NES V +K + R+ I +K+P E+I + K Sbjct: 289 NESPKVILNEHKMRKDLYYRLNIIHIKIPPLRDRKEDIPLLCKKF 333 >UniRef50_A6TL57 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TL57_ALKMQ Length = 580 Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 32/239 (13%), Positives = 73/239 (30%), Gaps = 17/239 (7%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G AN+G + E+ + + LL A + G G + + N ++A +N Sbjct: 343 GLFELANKGTLFLDEIGDMDLDLQSKLLRALENGAITRVGGSTTIKVNVRVIAATNVDLE 402 Query: 309 VTFRNNKNNEAFLDRVYIVKV--PYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 R N+ R+ I+ + P EEI L + L + ++ Sbjct: 403 EKIRKNEFRSDLYFRLNIIPIRLPPLRDRKEEIP----YLVEALLVGLSASLHKRLIITP 458 Query: 367 FSI--LSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLSTRFA 424 ++ L P N + V+ + + + +D + Sbjct: 459 ETVTSLKHYHWPGNIRELQNVLVFAATMIDEDVITIDCLPKKIKERILDHAVPPQPPHEP 518 Query: 425 FKILSRVF-NFDHVEVAANPVHLFYVLEQQIEREQFPQEQAERYLEFLKGYLIPKYAEF 482 ++ + + +E + + + + ++ + L L Y + Sbjct: 519 RSFITPLRESQSELEK--------DKISKGLLEYGATVQGKKKVAQLLGISLATLYNKI 569 >UniRef50_A9GDL4 Sigma-54 dependent transcriptional regulator n=2 Tax=Myxococcales RepID=A9GDL4_SORC5 Length = 610 Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 27/206 (13%), Positives = 60/206 (29%), Gaps = 3/206 (1%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 GAL A G + E+ + + LL A + + ++A +N + Sbjct: 369 GALEAAEGGTVFLDELGELSLASQAKLLRALETRRITRVGSTREREVDFRVIAATNRNLE 428 Query: 309 VTFRNNKNNEAFLDRV--YIVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 + + + R+ V +P E+ I + A AP L + Sbjct: 429 AEVKAGRFRQDLFFRLSAATVWLPPLRDRKRELLILARAFLDRACARAGRAPLELSAAA- 487 Query: 367 FSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLSTRFAFK 426 +L++ P N + + + D + +G Sbjct: 488 VQLLAQHAWPGNVRELRNLMDFIAATAVDETVEPWHIAHRVRPTDDKKGSGTEPESEPAP 547 Query: 427 ILSRVFNFDHVEVAANPVHLFYVLEQ 452 + + +F + + +L+ Sbjct: 548 PVESLTHFRPIAEEIAELERKRMLQA 573 >UniRef50_B8FQQ1 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfitobacterium hafniense DCB-2 RepID=B8FQQ1_DESHD Length = 717 Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 26/207 (12%), Positives = 61/207 (29%), Gaps = 4/207 (1%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 G + A++G + E+ P+ + LL ++ G A + ++A +N+ Sbjct: 485 PGKIELADKGTLFLDEIGDMPLDIQAVLLRVLEDRKVLRIGGRKAKNVDFRVIAATNKDL 544 Query: 308 WVTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLS 365 + E R+ + + +P S +I+ + + L + Sbjct: 545 RRMVQEKTFREDIYFRLSVLTIHIPPLRTRSGDIEKLCQYFLSNYCRSNGYGKKALSEEA 604 Query: 366 RFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLSTRFAF 425 + +L+ P N +Y ++ +A+ A E Sbjct: 605 LY-LLTSYSWPGNIRQLENAIIYGINLSDNSLIEARHLPTDILGADKVE-KPKRPPAMEI 662 Query: 426 KILSRVFNFDHVEVAANPVHLFYVLEQ 452 + + LE+ Sbjct: 663 PATHEAYGRSSTLQEMELNAIIMALEK 689 >UniRef50_Q893M0 Putative sigma-54 interacting protein n=1 Tax=Clostridium tetani RepID=Q893M0_CLOTE Length = 595 Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 27/200 (13%), Positives = 51/200 (25%), Gaps = 12/200 (6%) Query: 189 GDITKFRVVKVWPSILQQIAIAKTEPGDENNQDISALVGKVDIRKLEHYAQNDPDAYGYS 248 G R + + + S L G K + Sbjct: 317 GKELVVRALHYGGERRDNPFVKVNCAAMPKDILESELFGHE---KGAFTGADKKRV---- 369 Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G A++G + E+ + + L Q+ + G + + I+ +N+ Sbjct: 370 GRFELAHKGTLFLDEIGDMDLSIQAKFLRIIQQQEFERVGGNKTIKVDVRIICATNKDLK 429 Query: 309 VTFRNNKNNEAFLDRVYIV--KVPYCLRISEEIKIYEKLLNHSELTHA-PCAPGTLETLS 365 + + E R+ + VP E+I + AP + Sbjct: 430 KEVKEGRFREDLYYRLNTITLYVPPLRERKEDIPFLIHHFLKEKGKKFDKIAPKISPEV- 488 Query: 366 RFSILSRLKEPENSSIYSKM 385 F L P N Sbjct: 489 -FDALMEYDWPGNVRELENA 507 >UniRef50_C0QJP8 Sigma-54 dependent DNA-binding response regulator n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QJP8_DESAH Length = 467 Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 50/155 (32%), Gaps = 3/155 (1%) Query: 236 HYAQNDPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPF 295 A G L +AN G + E+ + P+ L QE G +P Sbjct: 210 EKGSFTGAARRQDGLLVQANGGTLMLDEIGELPLDAQKSFLRTLQERCVRPIGGTLEIPV 269 Query: 296 NGIILAHSNESEWVTFRNNKNNEAFLDRVY--IVKVPYCLRISEEIKIYEKLLNHSELTH 353 + ++A +N + + L R+ +K+P ++I+ H Sbjct: 270 DIRLVAATNLDLDQRVKEGLFRQDLLYRIRAMEIKLPPLRDRRQDIEEITLKKVHELSHR 329 Query: 354 APCAPGTLETLSRFSILSRLKEPENSSIYSKMRVY 388 A + + ++L+ P N + Y Sbjct: 330 YNIANKAVSSE-LLTVLTSHDWPGNIRELINVLDY 363 >UniRef50_C0ZAD0 Putative transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZAD0_BREBN Length = 691 Score = 76.8 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 45/142 (31%), Gaps = 3/142 (2%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G A++G + E+ A + + LL QE G +P + ++A +N+ Sbjct: 424 GWFELAHKGTIFLDEIGDASTAIQNRLLRVLQERQIMRVGGSKIIPTDIRVIAATNQDLQ 483 Query: 309 VTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 R+ I + +P E+I + P TL + Sbjct: 484 RMIAEGAFRADLYYRLNILPIHLPPLRNRREDIPWLAQQFIKKYSYDLRRPPFTLTNEAM 543 Query: 367 FSILSRLKEPENSSIYSKMRVY 388 + L P N + Y Sbjct: 544 RA-LHEYDWPGNIRELENVIEY 564 >UniRef50_B8FTG8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Desulfitobacterium hafniense RepID=B8FTG8_DESHD Length = 680 Score = 76.8 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 23/166 (13%), Positives = 53/166 (31%), Gaps = 3/166 (1%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 G + AN G + E+ PI++ LL Q+ G + + ++ +N+ Sbjct: 452 PGKIELANGGTLFLDEIGDMPIELQAVLLRVLQDKMVMRIGGRNYRQVDFRLITATNQDL 511 Query: 308 WVTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLS 365 ++ + K E R+ + +++P +I I + + + + Sbjct: 512 KLSAQERKFREDLYFRISVLNIEIPPLRSRGFDIAILAEHFIENYAKRVGLPAAVISPEA 571 Query: 366 RFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAG 411 + IL P N +Y ++ + Sbjct: 572 KRRIL-EYNWPGNVRQLENAMIYAVNLSEEGQIMLSHLPKELSEKR 616 >UniRef50_UPI00016A7B7E two component, sigma54 specific, transcriptional regulator, Fis family protein n=3 Tax=pseudomallei group RepID=UPI00016A7B7E Length = 470 Score = 76.8 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 40/238 (16%), Positives = 71/238 (29%), Gaps = 23/238 (9%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 G AN+G + E+ P+ LL QE G + LP + I+A +NE Sbjct: 232 PGKFSAANRGTLFLDEIANLPLASQAKLLRVIQERTLYRVGGNTPLPLDVRIVAAANEDV 291 Query: 308 WVTFRNNKNNEAFLDRVY--IVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLS 365 R+ ++ VP ++I + T P + Sbjct: 292 EQKALEGDFRSDLFFRLSEFVIHVPALRERRDDILYLAQHFATQTCTELD-KPAVTFADA 350 Query: 366 RFSILSRLKEPENSSIYSK----MRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLST 421 L P N + G+ ++ ++ A G GLS Sbjct: 351 TCERLLNHPWPGNVRQLRNTIRQAVLVAGDIVQPAHLNIAESGKHAAPAPEF-GWEGLSL 409 Query: 422 RFAF---------KILSRVFNFDHVEVAANPVHLFYVLEQQIEREQFPQEQAERYLEF 470 + +++ +V H A L Q++ + + E +EF Sbjct: 410 KEVVRRNIADIERRVIDQVLQATHGNKAQAARVL------QVDYKTIHSKVKEYRIEF 461 >UniRef50_Q312T1 Putative transcriptional regulator, Fis family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q312T1_DESDG Length = 582 Score = 76.8 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 20/144 (13%), Positives = 45/144 (31%), Gaps = 13/144 (9%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G AN G++ E+ P+ + LL QE + + ++A +N++ Sbjct: 356 GKFELANGGVLFLDEISSMPLYLQVKLLRVLQERTITRLGSNKLINIDIRVIAATNDNLS 415 Query: 309 VTFRNNKNNEAFLDRVYIV--KVPYCLRISEEIKIYEKLLNHSELTHA-----PCAPGTL 361 +N R+ ++ ++P E++ + + P + Sbjct: 416 ELIAHNSFRSDLYYRLKVIPFEIPPLRERLEDVDMLTEHFFRKYGERFGKNLRHIDPQCM 475 Query: 362 ETLSRFSILSRLKEPENSSIYSKM 385 + L P N + Sbjct: 476 DM------LKSYPWPGNIREFENA 493 >UniRef50_A9F3C1 Family membership n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9F3C1_SORC5 Length = 433 Score = 76.8 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 41/123 (33%), Gaps = 6/123 (4%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 SGA AN G + E+ + P + LL A E P + I+A + Sbjct: 210 SGAFHEANGGTIFLDELGELPPDLQPKLLRALTEQKVKRVGSRIYEPVDVRIIAATRRDL 269 Query: 308 WVTFRNNKNNEAFLDRVY--IVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLS 365 + + R+ +++P E+I + L C +E ++ Sbjct: 270 GRSMNTGRFRSDLFFRIAQMRIELPPLRERREDIPL----LVERVCERLGCPERAVEMVN 325 Query: 366 RFS 368 + Sbjct: 326 LIT 328 >UniRef50_C0Z9N5 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z9N5_BREBN Length = 584 Score = 76.8 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 38/239 (15%), Positives = 68/239 (28%), Gaps = 23/239 (9%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 G A G + E+ P+ + LL QE G + P + I+A +N++ Sbjct: 360 PGRFEMAEGGTLFLDEIGDMPLSLQAKLLRVLQEKVVERIGGTRSFPIHVRIIAATNQNL 419 Query: 308 WVTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLS 365 R+ + + VP E+I++ A T ++ Sbjct: 420 EELVEKKAFRADLYYRLNVIPIHVPSLAERKEDIELLAVSFMEKYGEQAG---RTFFGIA 476 Query: 366 RFSI--LSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLSTRF 423 R +I L+ P N Y +DT A S R Sbjct: 477 REAINLLTHYHWPGNVRELENAIEYAMNMEQDTVLTADSL----------------PPRL 520 Query: 424 AFKILSRVFNFDHVEVAANPVHLFYVLEQQIEREQFPQEQAERYLEFLKGYLIPKYAEF 482 + L + + +++ + +R E L L Y + Sbjct: 521 RARPLVAPSHSGPAIKVRVADAQADAIRASLQKHGSDLKGKQRVAEELGIGLRTLYRKL 579 >UniRef50_A6CKR1 Putative uncharacterized protein n=1 Tax=Bacillus sp. SG-1 RepID=A6CKR1_9BACI Length = 685 Score = 76.8 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 28/200 (14%), Positives = 64/200 (32%), Gaps = 15/200 (7%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G AN G + E+ + + LL QE + G S + + I+A +N Sbjct: 464 GKFDLANGGTLFLDEIGDMSVALQAKLLRVLQEREFYRVGGNSRIKVDVRIIAATNRDLE 523 Query: 309 VTFRNNKNNEAFLDRVYIV--KVPYCLRISEEIKIYEKLLNHSE-----LTHAPCAPGTL 361 + + E R+ ++ K+P +++ L + +P Sbjct: 524 KMVKEGEFREDLYYRLNVISLKIPPLRERIHDVEYLTSQLMIELNSMLGTSITGISPKAK 583 Query: 362 ETLSRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDY--AGVDEGMNGL 419 E+L +++ P N + + + + + +Y + NGL Sbjct: 584 ESLLQYN------WPGNVRELKNILERAMTFAEHGNIQVEDLPDYLIDQLTIPKKEKNGL 637 Query: 420 STRFAFKILSRVFNFDHVEV 439 + + + + + Sbjct: 638 AEDAELEAIRKALTQANGNK 657 >UniRef50_A0N0V6 Putative regulatory protein n=2 Tax=Azoarcus anaerobius RepID=A0N0V6_9RHOO Length = 661 Score = 76.8 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 53/139 (38%), Gaps = 3/139 (2%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G L A+ G + E+ + P+ + LL A QEG + + ++A +NE + Sbjct: 433 GKLELADGGTIFLDEINQMPLDLQSKLLRALQEGTITRLGDTRPIRIDVRVIAAANEDLY 492 Query: 309 VTFRNNKNNEAFLDRVYIVK--VPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 R + + R+ +V+ +P ++I + + L + +L + Sbjct: 493 GKSRTGEFRQDLYYRLSVVELALPPLRERGDDIALIARHLLDTLGEKIDKPALSLSPPA- 551 Query: 367 FSILSRLKEPENSSIYSKM 385 +L + P N + Sbjct: 552 IELLRQYPWPGNVRELENV 570 >UniRef50_Q1N5U9 Sigma-54 dependent transcriptional regulator/sensory box protein n=1 Tax=Bermanella marisrubri RepID=Q1N5U9_9GAMM Length = 479 Score = 76.8 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 47/138 (34%), Gaps = 3/138 (2%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G AN+G + E+ + P+ LL QEG + G + + I+A SN++ Sbjct: 258 GRFELANKGTLFLDEVSELPLDAQVKLLRVLQEGEFERVGGNKTIRVDVRIIAASNKNLE 317 Query: 309 VTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 + R+ + V+VP ++ I + L S Sbjct: 318 QAVHDGSFRLDLYYRLNVFSVQVPPLRERKSDLPILSHFFAKKACADMGKSFKGLHMPSL 377 Query: 367 FSILSRLKEPENSSIYSK 384 +S + P N S Sbjct: 378 KW-MSHYQWPGNIRELSN 394 >UniRef50_C6WXM6 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WXM6_METML Length = 642 Score = 76.8 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 2/115 (1%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 G + +AN G + E+ P+ + LL QE +P N +++ +N Sbjct: 421 PGKIEQANGGTLFLDEIGDMPLSLQARLLRVLQERTVTPLGSTKTIPVNFSLISATNLKL 480 Query: 308 WVTFRNNKNNEAFLDRVY--IVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGT 360 + + R+ V +P S+ + + +LN + P Sbjct: 481 KEKVESGEFRSDLYYRLNGLSVALPPLRERSDLQALIDVILNIEQAGAIEITPEV 535 >UniRef50_C5EQI0 Sigma54 specific transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EQI0_9FIRM Length = 478 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 47/136 (34%), Gaps = 4/136 (2%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G + A+ G + E+ + + + LL QE + +P + I+A +N + Sbjct: 253 GLIELADGGTLFLDEIGELGLDIQAKLLQVVQERSVRRIGSARTVPLDIRIIAATNRNLE 312 Query: 309 VTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 ++ + R+ + V++P + EI + + + S Sbjct: 313 QMVKDGQFRLDLYYRLNVVTVEIPPLRERTVEIPLLVNAFLNRFNKKY--STHKTMGASA 370 Query: 367 FSILSRLKEPENSSIY 382 +L R P N Sbjct: 371 MDVLMRHDWPGNIREL 386 >UniRef50_A8ZZQ7 Sigma-54 factor interaction domain-containing protein n=4 Tax=Proteobacteria RepID=A8ZZQ7_DESOH Length = 684 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 19/139 (13%), Positives = 46/139 (33%), Gaps = 2/139 (1%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G RAN G + E+ + P+ +L G ++P + I+A ++ + Sbjct: 454 GRFERANGGTIFLDEIAELPLPAQVRMLRVLHNKIIERVGGTESIPVDIRIIAATHRNLE 513 Query: 309 VTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 + + E R+ + +++P + ++ + P + Sbjct: 514 ERVKAGRFREDLWFRLNVFPIRIPPLRSRTMDVPALSDHFIEKKSRELKIHPTPPLSPDA 573 Query: 367 FSILSRLKEPENSSIYSKM 385 + L+ P N + Sbjct: 574 MARLTAYSWPGNVRELENV 592 >UniRef50_B2A7X5 Putative sigma54 specific transcriptional regulator n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A7X5_NATTJ Length = 594 Score = 76.4 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 54/140 (38%), Gaps = 3/140 (2%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 GA A+ G + E+ P+ + LL A QEG++ GI + + I+A +N++ Sbjct: 353 PGAFEIADGGTLFLDEIGDLPLNMQAKLLRALQEGSFYRVGGIEPVSVDVRIIAATNQNL 412 Query: 308 WVTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLS 365 +NN+ E R+ + +++P +E+I K +E Sbjct: 413 EELVQNNQFREDLYYRINVANLELPPLREKTEDIMPLTKRFIDHFSQVHGIEITEIEQAV 472 Query: 366 RFSILSRLKEPENSSIYSKM 385 + L P N + Sbjct: 473 MDT-LEEYHWPGNVRELKNV 491 >UniRef50_C1ZA32 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains n=10 Tax=Bacteria RepID=C1ZA32_PLALI Length = 551 Score = 76.4 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 3/137 (2%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G A+ G + E+ + P+++ LL QEG N I+A +N Sbjct: 308 GRFELADGGTLFLDEVGEIPLELQAKLLRVLQEGELERVGEERTRKVNVRIIAATNRDLR 367 Query: 309 VTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 + + + R+ + V+VP R E++ + P L TL+ Sbjct: 368 MEAEAGRFRQDLYYRLSVFPVEVPPLRRRKEDVPLLASHFLRIAARKVGR-PQPLLTLAI 426 Query: 367 FSILSRLKEPENSSIYS 383 L + P N Sbjct: 427 VQKLQQYDWPGNVRELQ 443 >UniRef50_A6TQQ2 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TQQ2_ALKMQ Length = 475 Score = 76.4 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 32/213 (15%), Positives = 65/213 (30%), Gaps = 14/213 (6%) Query: 244 AYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHS 303 A G +AN G + E+ +++ LL QEG G +P + I+A + Sbjct: 234 AIDRPGIFEQANGGTILLDEINSMGLQLQGKLLRVLQEGYVRRIGGTKNIPIDVRIIATT 293 Query: 304 NESEWVTFRNNKNNEAFLDRVYIVKV--PYCLRISEEIKIYEKLLNHSELTHAPCAPGTL 361 NE + + + R+ +V + P E+I + + + + Sbjct: 294 NEDPLKAIKEYRLRKDLYFRLNVVNIQLPTLAERPEDIVLLTQNFINKYNERLDKDVWMV 353 Query: 362 ETLSRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGV----DEGMN 417 P N V +G D + + Y ++G Sbjct: 354 SEF-MKERFELYSWPGNVRELEN--VVEGAMNMVQDEHILKQEHFPMYLTSEMKRNKGNI 410 Query: 418 GLS-----TRFAFKILSRVFNFDHVEVAANPVH 445 G + + L + N +++ + Sbjct: 411 GAKQFAGLPLDSRQSLDEILNDIEMQMIIYAMS 443 >UniRef50_C6HWP3 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HWP3_9BACT Length = 375 Score = 76.4 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 55/164 (33%), Gaps = 7/164 (4%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 G AN G + F E+ + P+ + LL QE Y G+ N +LA ++ + Sbjct: 104 PGRFELANGGTIFFDEIGELPLPLQVKLLRVLQEKTYERVGGVRVQTANVRVLAATHRNL 163 Query: 308 WVTFRNNKNNEAFLDRVYIV--KVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLS 365 R + E R+ ++ ++P E+I + P L Sbjct: 164 EEMSREGRFREDLFYRLSVIPVEIPPLRERREDIPLLMTFFQRRWEEEGRGDPVELGMDV 223 Query: 366 RFSILSRLKEPENSSIY----SKMRVYDGESLKDTDPKAKSYQE 405 + + L P N ++ V G D + ++ Sbjct: 224 QKA-LCDYPWPGNVRELENVMERLHVLYGGETVTVDLLPEKIRQ 266 >UniRef50_B8J209 Putative two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8J209_DESDA Length = 510 Score = 76.4 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 3/136 (2%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G L AN+G + E+ P + L A + + + + + ++A +N Sbjct: 222 GLLLSANKGTLFLDEVGDLPQTIQGAFLRALELRRFRPVGDVREVSSDFRLVAATNRDIE 281 Query: 309 VTFRNNKNNEAFLDRVY--IVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 R L R+ + +P +EI + H P + + Sbjct: 282 SMAREGTFRADLLYRLQGMTIVIPPLRERRDEIPALTRQAASRFCLHNDLPPKAVSD-AM 340 Query: 367 FSILSRLKEPENSSIY 382 +L P N Sbjct: 341 LDVLMEYSWPGNVREL 356 >UniRef50_C5S946 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S946_CHRVI Length = 459 Score = 76.4 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 38/96 (39%), Gaps = 2/96 (2%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G L AN G + E+ + P + LL QE G + + ++A +N Sbjct: 236 GKLEAANTGTIFLDEIGELPPEQQVNLLRVLQEHRVQRVGGHVEVKLDLRVIAATNADLE 295 Query: 309 VTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIY 342 ++ + E R+ + + +P E+I+I Sbjct: 296 QAVQDGRFREDLYYRLNVLLLSLPPLRDRIEDIEIL 331 >UniRef50_P0AFB9 Nitrogen regulation protein NR(I) n=502 Tax=Bacteria RepID=NTRC_ECO57 Length = 469 Score = 76.4 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 58/177 (32%), Gaps = 3/177 (1%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 G +A+ G + E+ P+ V LL +G + G + + + I+A ++++ Sbjct: 225 QGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNL 284 Query: 308 WVTFRNNKNNEAFLDRVYIVKV--PYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLS 365 + K E R+ +++V P E+I + L + Sbjct: 285 EQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPET 344 Query: 366 RFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLSTR 422 + L+RL P N + + + + V E + + Sbjct: 345 E-AALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPD 400 >UniRef50_C6HYC9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HYC9_9BACT Length = 481 Score = 76.4 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 21/139 (15%), Positives = 44/139 (31%), Gaps = 3/139 (2%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 G +A+ G++ E+ + +L QE G ++P + ++A +N Sbjct: 224 PGKFEQASGGVLFLDEIGDMALSTQARVLRVLQERQLTRIGGTRSIPVDVRVVAATNRDL 283 Query: 308 WVTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLS 365 + E R+ + ++VP +I I + P + Sbjct: 284 PGMIARKEFREDLFYRLNVVSIRVPPLRERLSDIPILVEHFVEILCRDFGHRPKLFSREA 343 Query: 366 RFSILSRLKEPENSSIYSK 384 ++ R P N Sbjct: 344 LEALCER-TWPGNVRELKN 361 >UniRef50_Q7WZ29 MmoR n=1 Tax=Methylococcus capsulatus RepID=Q7WZ29_METCA Length = 581 Score = 76.4 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 29/203 (14%), Positives = 57/203 (28%), Gaps = 11/203 (5%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 G A+ G++ E+ + LL + G + G L + ++A +N Sbjct: 331 PGKFLLADGGVLFLDEIGDMSFDLQATLLRVLETGEFVPVGGAKPLRVDVQVVAATNVDL 390 Query: 308 WVTFRNNKNNEAFLDRVY--IVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLS 365 R + R+ + +P + + +I+ + A A Sbjct: 391 QEAIRQGRFRRDLYYRLNGARLHLPPLRQRPDRCRIFHAVFEQEAA--AAGASRIRLGEG 448 Query: 366 RFSILSRLKEPENSSIY----SKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLST 421 ++ R P N S+ D + E + EG +GL Sbjct: 449 VMALFERHPWPGNLRELRNVIRNALFACSGSVLTVDDLPADFLEEAEQ---YEGSSGLEG 505 Query: 422 RFAFKILSRVFNFDHVEVAANPV 444 R A + + Sbjct: 506 REAVHFADGLSLSKVESESIAAA 528 >UniRef50_B0K647 Sigma54 specific transcriptional regulator, Fis family n=12 Tax=Firmicutes RepID=B0K647_THEPX Length = 544 Score = 76.4 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 21/139 (15%), Positives = 45/139 (32%), Gaps = 3/139 (2%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G A+ G + E+ P ++ LL QE + GI + + I+A +N+ Sbjct: 317 GKFELADGGTIFLDEIGDIPPEIQVKLLRVIQEKEFERVGGIKTIKVDVRIIAATNKDLE 376 Query: 309 VTFRNNKNNEAFLDRVYIVKV--PYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 + E R+ ++ V P +I + + + + Sbjct: 377 KAIKEGTFREDLYYRLNVIPVILPPLRERRGDIPLLVEHFIEKLNKKLNKNVKKVTKKAM 436 Query: 367 FSILSRLKEPENSSIYSKM 385 +++ P N + Sbjct: 437 QALIY-YDWPGNIRELENI 454 >UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=A7HIM1_ANADF Length = 495 Score = 76.4 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 28/180 (15%), Positives = 53/180 (29%), Gaps = 22/180 (12%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G AN G + E+ + P V LL QE + G + + +++ +N + Sbjct: 261 GRFELANGGTLFLDEVGEIPHAVQVKLLRVLQERQFERVGGEETVEVDVRVVSATNRNLA 320 Query: 309 VTFRNNKNNEAFLDRVYIVKV--PYCLRISEEIKIYEKLLNHSELTHA-----PCAPGTL 361 + + E R+ +V + P +++ + AP L Sbjct: 321 QMVESGRFREDLYYRLNVVPILLPPLRDRPGDVEELARFFVARLAPRMSRAVTGLAPEAL 380 Query: 362 ETLSRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLST 421 E L R + P N + + E + EG+ Sbjct: 381 EL------LRRHRWPGNVRELENV---------IEQALVFAEGELVRPRDLPEGVRKAPP 425 >UniRef50_A4G2F7 AoxR regulatory protein n=1 Tax=Herminiimonas arsenicoxydans RepID=A4G2F7_HERAR Length = 454 Score = 76.4 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 44/137 (32%), Gaps = 3/137 (2%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G +AN G + E+ + LL QE + N ++A ++ Sbjct: 217 GYFEQANNGTVFLDEIGELAPAAQVRLLRVLQEHTLTRLGSEKPIKVNFRLIAATHRDVR 276 Query: 309 VTFRNNKNNEAFLDRVYIV--KVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 + + E R+ I+ +VP +++ +L P +P L + Sbjct: 277 EEVKAGRFREDLYYRINIIQLRVPPLRERLDDVAWLARLFLEQWNQAHPTSPRMLSEPT- 335 Query: 367 FSILSRLKEPENSSIYS 383 + L L N Sbjct: 336 ITFLCTLPWRGNIRELK 352 >UniRef50_A7HEU6 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HEU6_ANADF Length = 637 Score = 76.4 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 51/158 (32%), Gaps = 3/158 (1%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G A+ G + E+ + P + LL QE G + P + I+A +N + Sbjct: 405 GRFEEADGGTLFLDEISELPPQAQTALLRVLQESEVVRLGGSAPRPVDVRIVAATNRRLY 464 Query: 309 VTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 + + R+ + V +P SE++ + + A L S+ Sbjct: 465 DQVETGRFRQDLYFRLNVLHVDIPPLRDRSEDVPLLARAFLREAEERMGRAGLELSEESK 524 Query: 367 FSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQ 404 +L+ P N + + + + Sbjct: 525 ALLLAH-PWPGNVRELRNVIMRAAAVASGARIEPADLR 561 >UniRef50_C1SGC3 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGC3_9BACT Length = 464 Score = 76.4 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 33/244 (13%), Positives = 68/244 (27%), Gaps = 9/244 (3%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G AN G + E+ + + + LL QE L + I+A SN + Sbjct: 220 GKFEEANHGTIFLDEISEMDMGLQSKLLRVIQEKEVTKIGSNKTLKLDTRIIAASNRNLE 279 Query: 309 VTFRNNKNNEAFLDRVYIVKV--PYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 K E R+ +V + P E+ H + E Sbjct: 280 ELVSTGKFREDLYYRLNVVSIELPPLYERKEDTAYLTNHFLHKHQSIKDKVLTCSEEA-- 337 Query: 367 FSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLSTRFAFK 426 ++ + P N Y + + K ++ G G + S Sbjct: 338 LDAMTAYRWPGNIRELENSIQYAIVNAETDVIKLENLPPKIFEQGTGSGKSSTS----HD 393 Query: 427 ILSRVFNFDHVEVAANPVHLFYVLEQQIEREQFPQE-QAERYLEFLKGYLIPKYAEFIGK 485 + N E+ + + + + +E + + ++ K Sbjct: 394 LYKLALNIIESEILSEGNNAYDEFMKIVEYPIIKAVMDKTGNNKSVSAKILGINRNTFRK 453 Query: 486 EIQT 489 +++ Sbjct: 454 KVRE 457 >UniRef50_Q2LXQ0 Response regulator with sigma 54 interaction domain n=2 Tax=Deltaproteobacteria RepID=Q2LXQ0_SYNAS Length = 502 Score = 76.4 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 39/252 (15%), Positives = 82/252 (32%), Gaps = 17/252 (6%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 G A+QG + E+ + P + LL Q+ + GI + + I+A +N Sbjct: 224 PGKFELADQGTIFLDEIGEIPRDMQVKLLQVLQDQTFERVGGIKTIQVDVRIIAATNRDL 283 Query: 308 WVTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHS-----ELTHAPCAPGT 360 + E R+ + +K+P E+I + P Sbjct: 284 IKEIKEGNFREDLYYRLNVVPIKMPPLRERKEDIIPLTHYFLDRFNDKLNMDIKGIDPQV 343 Query: 361 LETLSRFSILSRLKEPENSSIYSKMRVY---DGESLKDTDPKAKSYQEYRDYAGVDEGMN 417 LE +++ ++E EN + ++ + + S +D + K+ ++ N Sbjct: 344 LECFKKYNWPGNIRELEN--LIERIILLTKGNTISPEDVPEEIKTMEDQDLPENEVHEKN 401 Query: 418 GLST---RFAFKILSRVFNFDHVEVAANPVHLFYVLEQQIEREQFPQEQAERYLEFLKGY 474 R R+ E E ++ + Q ++++ Sbjct: 402 PFEEYLLREMENFTERLVLMARSEKKREAGDRLE--EDSLDSTEKDQGVYRKFIKSKTAE 459 Query: 475 LIPKYAEFIGKE 486 + K E I +E Sbjct: 460 VEKKMIEKILEE 471 >UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYM7_9BACT Length = 469 Score = 76.4 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 34/213 (15%), Positives = 66/213 (30%), Gaps = 15/213 (7%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 G A++G + E+ + + + LL QE + GI + + I+A +N + Sbjct: 234 PGLFEIADKGTVFLDEIGEMGVLLQAKLLRILQERQFKRVGGIQDIKIDVRIIASTNRNL 293 Query: 308 WVTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTHAP-----CAPGT 360 + + R+ + + VP E+I + K H P T Sbjct: 294 EEEIASGNFRKDLYYRLKVLPIYVPPLRERREDIMLLVKYFIHKYNNEFGKNICDIPPDT 353 Query: 361 LETLSRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYR-DYAGVDEGMNGL 419 L + P N + V G + + + Y E + G+ Sbjct: 354 ERILLEYG------WPGNIRELKNV-VERGVLIANGSALSPKYVANISVGKKESESLAGI 406 Query: 420 STRFAFKILSRVFNFDHVEVAANPVHLFYVLEQ 452 + +S H+ VL++ Sbjct: 407 TVDGNTDCVSSDGLDARSLAFMEKQHIENVLKE 439 >UniRef50_C1F3N9 Sigma-54 dependent DNA-binding response regulator n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F3N9_ACIC5 Length = 484 Score = 76.4 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 40/241 (16%), Positives = 72/241 (29%), Gaps = 16/241 (6%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 G L A G + E+ + P+ + LL A QE + N ILA +N + Sbjct: 243 DGLLVAAEGGTVFLDEIGEMPLDLQAKLLRALQEKEVRPVGATHRVKINVRILAATNRNL 302 Query: 308 WVTFRNNKNNEAFLDRVYIVK--VPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLS 365 + R+ +VK +P E+I + + Sbjct: 303 AEMVEQGRFRRDLYYRLNVVKLVLPPLRERREDIPLLAAHFLDRIGREYGK--KFRLSAE 360 Query: 366 RFSILSRLKEPENSSIYSKM-----RVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLS 420 +++S P N S GE ++ D + Y +A + Sbjct: 361 ALAMISEYPWPGNVRELSNALDRACSFCSGEQVQAGDLTSPVKDFYLQHAAMQRKR---- 416 Query: 421 TR---FAFKILSRVFNFDHVEVAANPVHLFYVLEQQIEREQFPQEQAERYLEFLKGYLIP 477 R + + V + +E A L V ++ + LK Y + Sbjct: 417 PRTRAELPEAEAEVLSLAEIEKRAILSTLAQVKGDKLLAARLLDIGKTTLYRKLKEYGVA 476 Query: 478 K 478 + Sbjct: 477 E 477 >UniRef50_A0KWT7 Response regulator receiver protein n=2 Tax=Gammaproteobacteria RepID=A0KWT7_SHESA Length = 500 Score = 76.4 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 51/143 (35%), Gaps = 11/143 (7%) Query: 246 GYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNE 305 Y G +AN G + E+ + P+ V LL A Q+G + + ++A +++ Sbjct: 261 DYPGLFEQANNGTLFLDEVGELPLDVQVKLLRALQQGEVTRLGDTKTINVDVRVIAATHQ 320 Query: 306 SEWVTFRNNKNNEAFLDRVY--IVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLET 363 N K E R+ ++++P E+I + L A + Sbjct: 321 DLNKLVANGKFREDLFYRLAVGVIRIPSLRERQEDIPLIVGQLVDQI---NHSASKHPQY 377 Query: 364 LSR------FSILSRLKEPENSS 380 +S+ LS P N Sbjct: 378 ISKKISEKGIKFLSSQYWPGNIR 400 >UniRef50_Q30WV1 Transcriptional regulator n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30WV1_DESDG Length = 465 Score = 76.1 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 25/138 (18%), Positives = 45/138 (32%), Gaps = 3/138 (2%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G +A++G + E+ P+ LL QEG + + I+A +N + Sbjct: 239 GMFEQADKGTIFLDEIGDMPLAAQVKLLRVIQEGKVSRIGSEKITKVDVRIIAATNRNLE 298 Query: 309 VTFRNNKNNEAFLDRVYIVKV--PYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 + E R+ ++ + P EEI I K + L + + Sbjct: 299 EMVKEKTFREDLFYRLNVIPIKLPALRHAVEEIPILAKRIWKRMSRKNGMFHKYLNSSAL 358 Query: 367 FSILSRLKEPENSSIYSK 384 + L P N Sbjct: 359 IA-LQEYPWPGNVRELQN 375 >UniRef50_B8DNW7 Two component, sigma54 specific, transcriptional regulator, Fis family n=11 Tax=Deltaproteobacteria RepID=B8DNW7_DESVM Length = 528 Score = 76.1 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 38/219 (17%), Positives = 78/219 (35%), Gaps = 11/219 (5%) Query: 244 AYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHS 303 G A G + E+ + P+++ LL A QE + +P + I+A + Sbjct: 223 VRDKPGRFQLARGGTLFLDEIGELPLELQSKLLRALQERVVEPLGAVRPVPVDVRIIAAT 282 Query: 304 NESEWVTFRNNKNNEAFLDRVYIVKV--PYCLRISEEI-----KIYEKLLNHSELTHAPC 356 N + E R+ +++V P E++ ++ E+L ++ Sbjct: 283 NRDLKRAVEAGEFREDLFFRLNVLEVISPPLRDRLEDLPMLAGRLLERLCRKNKKGIRSV 342 Query: 357 APGTLETLSRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGM 416 +P L+ L R+S ++E EN + + D R G Sbjct: 343 SPEFLDALMRYSWPGNVRELENV--LERALILSRSDTLGPDSLPSQVLADRADRWERGGP 400 Query: 417 NGLSTRFAFKILSRV--FNFDHVEVAANPVHLFYVLEQQ 453 +G R ++ R ++ D +++ + E+Q Sbjct: 401 DGGQYRGQDRVGDRQRPYSSDRPDMSDRAGMVDRAFERQ 439 >UniRef50_D0Z425 Formate hydrogenlyase transcriptional activator n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0Z425_LISDA Length = 739 Score = 76.1 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 46/136 (33%), Gaps = 3/136 (2%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G +A++G + E+ P+++ LL A QE + + I+ +N Sbjct: 468 GRFEQAHKGTLFLDEIGDMPLELQPKLLRALQENEIERVGKNQLISVDVRIVVATNVDLL 527 Query: 309 VTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 + R+ + ++VP + +E+I + K + S Sbjct: 528 AMVDAKQFRNDLYYRLNVFPIEVPPLRQRAEDIPLLVKHFARQLAQKMGKKITAI-AASD 586 Query: 367 FSILSRLKEPENSSIY 382 ++ R P N Sbjct: 587 LELMQRFSWPGNVREL 602 >UniRef50_A1HLP6 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Firmicutes RepID=A1HLP6_9FIRM Length = 635 Score = 76.1 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 31/210 (14%), Positives = 64/210 (30%), Gaps = 14/210 (6%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 G A+ G + E+ + P+ + LL QE G +P + I+A SN + Sbjct: 407 PGLFELAHGGTIFLDEISEMPLPLQSRLLRVLQEREVLRIGGDRIIPVDVRIIAASNRNL 466 Query: 308 WVTFRNNKNNEAFLDRVYIVKV--PYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLS 365 + R++++ + P E+I + + H+ P + S Sbjct: 467 RNLVEKGLFRDDLYYRLHLLTLTAPPLRERKEDIPLLVRAFLR---KHSHLNPLVSDIDS 523 Query: 366 R-FSILSRLKEPENSSIYSKM---RVYDGESLKDTDPKAKSYQEYRD--YAGVDEGMNGL 419 +L+ + P N + E + E G Sbjct: 524 LAVQLLAEYEWPGNVRELENAIQRLIILSEEQIIGKAAVSALLEELQGGQTLPFRGKQQA 583 Query: 420 STRFAF---KILSRVFNFDHVEVAANPVHL 446 + A + ++ V ++ + L Sbjct: 584 APSLADLEAQYIAAVLAEENNNKSRAAKRL 613 >UniRef50_C8W392 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W392_DESAS Length = 459 Score = 76.1 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 45/139 (32%), Gaps = 3/139 (2%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G A+ GI+ E+ + P+ LL QE + G ++ + ILA +N + Sbjct: 229 GKFEIAHNGIVFLDEIGELPLHTQAKLLRVLQEKEFERVGGTKSIEVDVRILAATNRNLE 288 Query: 309 VTFRNNKNNEAFLDRVYIVKV--PYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 + K E R+ +V V P E+I + + + Sbjct: 289 DMVQEGKFREDLYYRLNVVNVKLPPLRERKEDISLLINYFVKKFARKYNKNISGISQEAM 348 Query: 367 FSILSRLKEPENSSIYSKM 385 + P N + Sbjct: 349 I-FAEKYAWPGNVREIKNV 366 >UniRef50_Q9KBP6 Transcriptional regulator (Sigma-L-dependent) n=1 Tax=Bacillus halodurans RepID=Q9KBP6_BACHD Length = 555 Score = 76.1 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 21/139 (15%), Positives = 45/139 (32%), Gaps = 3/139 (2%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G A+ G + E+ + + LL QE G ++ + I+A ++ + Sbjct: 331 GRFELAHGGTIFLDEIGDMSLHLQAKLLRVLQERKVERVGGTQSVYVDVRIIAATHRNLE 390 Query: 309 VTFRNNKNNEAFLDRVYIVK--VPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 + E R+ ++ +P E++ I + P + Sbjct: 391 EMVQKKTFREDLYYRLNVIPITIPPVRERKEDLPILIEYFMKRLSNKEKKQPKYFSKDA- 449 Query: 367 FSILSRLKEPENSSIYSKM 385 + ++ R P N M Sbjct: 450 YDLIFRYPWPGNVREIVNM 468 >UniRef50_Q6ANF6 Related to transcriptional regulator n=1 Tax=Desulfotalea psychrophila RepID=Q6ANF6_DESPS Length = 600 Score = 76.1 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 23/142 (16%), Positives = 44/142 (30%), Gaps = 3/142 (2%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G A G++ E+ P+ + LL QE + + + I+A N++ Sbjct: 373 GKFELAAGGVIFLDEISSMPLYLQVKLLRVLQERTITRLGAANPISVDIRIIAACNDNLH 432 Query: 309 VTFRNNKNNEAFLDRVYIVKV--PYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 NK R+ ++ + P E++ + K + L R Sbjct: 433 EMMLQNKFRNDLYYRLNVIPIETPPLRNRMEDLTLLIKHFTNKYCDLFNKDQIFLSKNIR 492 Query: 367 FSILSRLKEPENSSIYSKMRVY 388 + + P N Y Sbjct: 493 -QRMEKYLWPGNIRELENAIEY 513 >UniRef50_A9BWZ0 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=cellular organisms RepID=A9BWZ0_DELAS Length = 547 Score = 76.1 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 21/150 (14%), Positives = 47/150 (31%), Gaps = 4/150 (2%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 G RA G + E+ + +++ LL + G + L + ++A +N Sbjct: 243 QGFFERAATGTLFLDEITEMSMELQVKLLRVLETGRFMRVGSTQTLQTDVRVIAATNRCP 302 Query: 308 WVTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLS 365 + + K E L R+ + +++P ++ + + + A S Sbjct: 303 YEAVASGKLREDLLYRLNVFPIELPPLRERLTDVPLLAQHFMEAISQREGQAKQFT--AS 360 Query: 366 RFSILSRLKEPENSSIYSKMRVYDGESLKD 395 L++ P N Sbjct: 361 ALKQLAQYSWPGNVRELRNAVQRAYVMEPG 390 >UniRef50_Q39SU6 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=Q39SU6_GEOMG Length = 461 Score = 76.1 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 27/196 (13%), Positives = 59/196 (30%), Gaps = 14/196 (7%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G +A G + E+ + P+++ LL A QE G + + ++A +N Sbjct: 235 GKFRQAEAGTLFLDEVGELPVELQSKLLRALQEKEVQPVGGAHTIKLDVRVVAATNADLE 294 Query: 309 VTFRNNKNNEAFLDRVYIVKV--PYCLRISEEIKIYEKLLNHSELT-HAPCAPGTLETLS 365 + E R+ ++ V P E+I + + +P L Sbjct: 295 EAIAEGRFREDLFYRLSVIPVHLPPLRERKEDIPLLVRHFAAKHGGASVTFSPEIL---- 350 Query: 366 RFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLSTRFAF 425 ++++ P N + A + V G + Sbjct: 351 --AVMAAYGWPGNVRELE-----NTVERILIMRNADTIHPDDLPEKVRRGRSPQRECRVI 403 Query: 426 KILSRVFNFDHVEVAA 441 + ++ + +E Sbjct: 404 NLPDEGYSLEQLEREI 419 >UniRef50_A5D4G1 Response regulator n=8 Tax=Bacteria RepID=A5D4G1_PELTS Length = 545 Score = 76.1 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 75/235 (31%), Gaps = 27/235 (11%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G A+ G + E+ + + LL + G + G + + ++A +N Sbjct: 232 GLFEMASGGTLFLDEIGEVSPAIQVKLLRVLETGEFLRVGGEKYVKTDVRLIAATNVDLR 291 Query: 309 VTFRNNKNNEAFLDRVYIVK--VPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 + +N E R+ V+ +P E+I + + + +E L Sbjct: 292 LALQNKTFREDLFYRLEGVRLEIPPLRERREDIPLLAEYFVRKANPGLLISSRAVELLCN 351 Query: 367 FSILSRLKE------------------PENSSIYSKMRVYDGESLKDTDPKAKSYQEYRD 408 +S ++E PE+ S R +DT+ +++ ++ Sbjct: 352 YSWPGNVRELSNIIRQAVALCDGNIILPEHLSAKIAARNSVQVKTRDTNDHSETGKKGAY 411 Query: 409 YAGVDEGMNGLS------TRFAFKIL-SRVFNFDHVEVAANPVHLFYVLEQQIER 456 +G EG G + + E + + LE+++ Sbjct: 412 GSGSREGSAGAGFYEKSLPTLLERYFAAAALEGASSEELMDILERVRRLEKRVLH 466 >UniRef50_A1VHV7 Sigma54 specific transcriptional regulator, Fis family n=5 Tax=Desulfovibrio vulgaris RepID=A1VHV7_DESVV Length = 614 Score = 76.1 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 46/138 (33%), Gaps = 3/138 (2%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G + A+ G + E+ P+ LL + A+P + ++A +N Sbjct: 260 GLVEEADGGTLFLDELADMPLPHQAKLLRVLEGREVVRVGSSRAIPVDIKVVAATNADLA 319 Query: 309 VTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 R + E R+ + V +P ++I + + T+ +R Sbjct: 320 QAVREGRFREDLYYRINVAEVHLPPLCERGDDILLLAQHFLERHCAQMGRPRLTISFGAR 379 Query: 367 FSILSRLKEPENSSIYSK 384 +L R P N + Sbjct: 380 -DLLRRYAWPGNVRELNN 396 >UniRef50_Q1ZGP7 Formate hydrogen-lyase transcriptional activator n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZGP7_9GAMM Length = 766 Score = 76.1 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 50/144 (34%), Gaps = 13/144 (9%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G A++ E+ P+++ +L A QEG + +P + ++A ++ Sbjct: 511 GRFEEAHKSSFFLDEIGDMPLQLQPKVLRALQEGEIERVGKHTIIPVDVRMIAATHCDLL 570 Query: 309 VTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNH-----SELTHAPCAPGTL 361 ++N R+ + +++P E+I + K +P TL Sbjct: 571 SMVKDNSFRRDLYYRLNVFPIRIPPLRERREDIPLLAKHFTQLFSKKMNRDIQSISPETL 630 Query: 362 ETLSRFSILSRLKEPENSSIYSKM 385 IL L P N + Sbjct: 631 R------ILYSLPWPGNVRELKNV 648 >UniRef50_Q1IQW5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Acidobacteria RepID=Q1IQW5_ACIBL Length = 461 Score = 76.1 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 61/182 (33%), Gaps = 6/182 (3%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G +A++G + E+ P+ + LL +EG G ++P + ++ ++ + Sbjct: 227 GKFEQAHRGTLFLDEIGDMPLAMQAKLLRVLEEGEVERVGGDKSIPVDVRVIVATHRNLE 286 Query: 309 VTFRNNKNNEAFLDRVYIVK--VPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 + K + RVY+ +P E+I + + P + Sbjct: 287 DLVKEGKFRQDLFHRVYVFPLILPPLRTRREDIPVLLEHFAAQVCLQNGWKPVPFTAEAV 346 Query: 367 FSILSRLKEPENSSIYSKM---RVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLSTRF 423 + L R P N + + + + + A D G LS+R Sbjct: 347 EA-LQRYSWPGNVREMRNVVERLLLLAVAGEVDRATVELALPEAQTATSDTGSGPLSSRV 405 Query: 424 AF 425 A Sbjct: 406 AQ 407 >UniRef50_Q1K388 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K388_DESAC Length = 648 Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 23/161 (14%), Positives = 49/161 (30%), Gaps = 5/161 (3%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 G + AN G + E+ P+++ LL QE + + I+A ++++ Sbjct: 427 PGKVEMANGGTLFLDEIGDMPLQMQVKLLRMLQERRICRVGSSEEISIDVRIIAATHQNL 486 Query: 308 WVTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLS 365 + + R+ + + +P +++ K L P + S Sbjct: 487 KQAVQEGCFRKDLYYRLNVLPITIPPLRERMDDLPALAKFLVTKLSGRFGKEP--VAISS 544 Query: 366 RFSILS-RLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQE 405 F P N + + D D + Sbjct: 545 LFMRACQSYDWPGNIRELENVIERAMNMVDDGDALTAEMID 585 >UniRef50_B8FL05 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FL05_DESAA Length = 453 Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 41/139 (29%), Gaps = 5/139 (3%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G AN G F E+ + + LL QE + G + + I+ SN Sbjct: 235 GLFELANHGTFFFDEISNLSMDIQAKLLRVIQEREFTQVGGAVRIKVDLRIMVASNRDLR 294 Query: 309 VTFRNNKNNEAFLDRVYIVKV--PYCLRISEEIKIYEKLLNHSELTHAPC-APGTLETLS 365 NK E R++++ + P ++I+ AP Sbjct: 295 AAIAENKFREDLFYRLHVIPIHLPPLRERGKDIEELVNYFVLHMSRKIGREAPKVSREA- 353 Query: 366 RFSILSRLKEPENSSIYSK 384 +L P N Sbjct: 354 -MDVLLSYAWPGNVRELEN 371 >UniRef50_B8FD65 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FD65_DESAA Length = 447 Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 22/140 (15%), Positives = 49/140 (35%), Gaps = 8/140 (5%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 G +AN G + E+ P++ +L +E + G+ +P + ++A +N + Sbjct: 213 PGKFEQANGGTVFLDEIGDMPLETQAKILRVLEEKEVDRLGGVRPIPVDVRVVAATNRNI 272 Query: 308 WVTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLS 365 + E R+ + +++P E+I + + +P + Sbjct: 273 QKMVADGAFREDLFFRLNVFPIQLPPLRERPEDIPFLIEEFMKFSSKESTISPPAMH--- 329 Query: 366 RFSILSRLKEPENSSIYSKM 385 IL + P N Sbjct: 330 ---ILCAHQWPGNVRELRNA 346 >UniRef50_A1VHZ7 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Desulfovibrio vulgaris RepID=A1VHZ7_DESVV Length = 476 Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 34/204 (16%), Positives = 61/204 (29%), Gaps = 21/204 (10%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 G + A+ G + E+ + P + LL QE G + + I+A +N Sbjct: 254 QGKVEYADGGTLFLDEIGELPANLQVKLLRFLQEKVIQRVGGRKDIAVDARIVAATNRDI 313 Query: 308 WVTFRNNKNNEAFLDRVYIVKV--PYCLRISEEIKI-----YEKLLNHSELTHAPCAPGT 360 + + E R+ +V V P ++I + E +P Sbjct: 314 QTEIASGRFREDLYYRIGVVPVALPPLRARGDDILLLARHFLESSAGEGTGNIVGFSP-- 371 Query: 361 LETLSRFSILSRLKEPENSSIYS----KMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGM 416 + ++L R P N + ++ D + A EG Sbjct: 372 ---AAEQAML-RYAWPGNVRELENKVRRAVIFASGRRIMPDDLGFDETPAKAAAPRPEG- 426 Query: 417 NGLSTRFAFKILSRVFNFDHVEVA 440 S R A L R ++ Sbjct: 427 ---SLREARNALERDMVLSALDKC 447 >UniRef50_P26047 Signal-transduction and transcriptional-control protein n=10 Tax=Clostridium RepID=STC_CLOBE Length = 632 Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 48/140 (34%), Gaps = 5/140 (3%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 G AN+G + E+ + P+ + LL QEG G + + I+A +N++ Sbjct: 410 PGKFELANEGTLFLDEIGEMPLDMQVNLLRVLQEGCITRIGGNKCVDVDVRIIAATNKNL 469 Query: 308 WVTFRNNKNNEAFLDRVYIVK--VPYCLRISEEIKIYEKLLNHSELTHA-PCAPGTLETL 364 + E R+ ++ VP + +I I + + P + + Sbjct: 470 KKEIEDGNFREDLYYRLSVIPIYVPPLRERNGDIGILIEHFLKIKADKLGKLIPEIRKNI 529 Query: 365 SRFSILSRLKEPENSSIYSK 384 + L P N Sbjct: 530 --YENLLSYGWPGNVRELEN 547 >UniRef50_A6TVV8 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Alkaliphilus RepID=A6TVV8_ALKMQ Length = 470 Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 20/138 (14%), Positives = 47/138 (34%), Gaps = 3/138 (2%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G N G + E+ P+++ +L + + G + + I+A +NE Sbjct: 248 GKFELGNGGTIVLDEIGAMPLEMQAKILRILESREFERIGGNDRIQLDVRIIAATNEPLE 307 Query: 309 VTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 + + + R+ + +++P E+I I + + L + Sbjct: 308 EAIKEGRFRQDLYYRLNVIPIEIPPLRERIEDIPILAQRILEKLAVDLGIEMKELTFET- 366 Query: 367 FSILSRLKEPENSSIYSK 384 +L + + P N Sbjct: 367 IEVLKKYQWPGNVRELRN 384 >UniRef50_Q1DD85 Sigma-54 dependent DNA-binding response regulator FrgC n=3 Tax=Myxococcus xanthus RepID=Q1DD85_MYXXD Length = 466 Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 46/166 (27%), Gaps = 7/166 (4%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 G + A+ G + E+ V LL QE G + + +A +++ Sbjct: 225 PGRVELAHGGTLFLDEVGDISPAVQVKLLRVIQERELERLGGTQTVKVDVRFVAATHQPL 284 Query: 308 WVTFRNNKNNEAFLDRVYIVKV--PYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLS 365 + + E R+ +V V P ++I+ P TL Sbjct: 285 EERVKEGRFREDLFYRLNVVPVWIPALRERPDDIEPLALHFLEVHAKTNGRPPFTL-MTD 343 Query: 366 RFSILSRLKEPENSS----IYSKMRVYDGESLKDTDPKAKSYQEYR 407 + L P N ++ V + + Sbjct: 344 GLAALRAQPWPGNVRQLQNFLERLVVLSDTQVIGGREVLQELARQP 389 >UniRef50_A0LLZ0 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A0LLZ0_SYNFM Length = 466 Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 43/144 (29%), Gaps = 13/144 (9%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G A++G + E+ + LL QE ++ + ++A +N Sbjct: 231 GLFQEAHKGTIFLDEIGDISPNIQAKLLRVLQEKVIKPLGDTKSVSVDVRVVASTNRDLG 290 Query: 309 VTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHS-----ELTHAPCAPGTL 361 R + E R+ + + +P E+I + L AP Sbjct: 291 DRIRRGEFREDLFYRLNVLPIVMPSLRERPEDIPLLVNHLIEKHCAALNRPRKSVAPELT 350 Query: 362 ETLSRFSILSRLKEPENSSIYSKM 385 E I R P N + Sbjct: 351 E------IFLRAPWPGNVRELENV 368 >UniRef50_Q12HA0 Sigma54 specific transcriptional regulator with PAS sensor, Fis family n=9 Tax=Proteobacteria RepID=Q12HA0_POLSJ Length = 604 Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 25/156 (16%), Positives = 47/156 (30%), Gaps = 9/156 (5%) Query: 203 ILQQIAIAKTEPGDENNQDISALVGKVDIRKLEHYAQNDPDAYGYSGALCRANQGIMEFV 262 + +A S L G ++ G RA+ G + Sbjct: 316 RKDRPFVAVNCAAIPETLIESELFG-------VERGAYTGASHSRPGRFERASGGTLFLD 368 Query: 263 EMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEWVTFRNNKNNEAFLD 322 E+ LL A QEG G ++ + ++A +NE+ K E Sbjct: 369 EIGSLSYVAQGKLLRALQEGEVERVGGTRSIAVDVRVVAATNEALRQAVLEGKFREDLFF 428 Query: 323 RVYI--VKVPYCLRISEEIKIYEKLLNHSELTHAPC 356 R+ + + +P ++I + + C Sbjct: 429 RLNVFPIHLPPLRERRDDIPLLMNHFLNHYRRKHGC 464 >UniRef50_B8IZ33 Two component, sigma54 specific, transcriptional regulator, Fis family n=15 Tax=Desulfovibrionales RepID=B8IZ33_DESDA Length = 459 Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 47/139 (33%), Gaps = 3/139 (2%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G +A+ G + E+ + + LL QE + G + + ++A +N+ Sbjct: 231 GRFEQADGGTLFLDEIAELTPDLQVKLLRVLQERRFERVGGGEEIEVDIRVVAATNKDLA 290 Query: 309 VTFRNNKNNEAFLDRVYIVKV--PYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 + R+ +V++ P E+I + T T T + Sbjct: 291 AMVEKGTFRDDLYYRLNVVQIPLPPLRERREDIPLLVAHFVDKVCTDNTMPAKTFSTEAL 350 Query: 367 FSILSRLKEPENSSIYSKM 385 + L+ + P N + Sbjct: 351 -NYLTGYEWPGNIRQLENV 368 >UniRef50_A5N2U4 Predicted signal transduction and transcriptional regulator protein n=2 Tax=Clostridium kluyveri RepID=A5N2U4_CLOK5 Length = 659 Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 52/171 (30%), Gaps = 4/171 (2%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 G A +G + E+ P+++ LL QE + + I+ +N+ Sbjct: 432 PGKFQLAQKGTLFLDEIGDMPMELQANLLRVLQEKTVTPLGSNEIIELDVRIITATNKDL 491 Query: 308 WVTFRNNKNNEAFLDRV--YIVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLS 365 + E R+ + VP ++++ + C ++ Sbjct: 492 LLEVEKGNFREDLYYRISGINIDVPPLRERGKDVEELFYKFLDKYASDV-CEYKNIKVTD 550 Query: 366 RFSI-LSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEG 415 F L K P N M + +L+D+ + EG Sbjct: 551 EFIRALCEYKWPGNVRELENMVISILNNLEDSCIGVEDLPAKILKCIKVEG 601 >UniRef50_B3E4E8 Putative sigma54 specific transcriptional regulator n=1 Tax=Geobacter lovleyi SZ RepID=B3E4E8_GEOLS Length = 408 Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 22/138 (15%), Positives = 44/138 (31%), Gaps = 3/138 (2%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G + +A G + E+ + P+++ LL +E +A+P + I+A +N Sbjct: 191 GKIQQAQGGTLFLDEVGEMPLQLQAKLLRVLEERTLERVGSRTAIPVDLRIIAATNRDLT 250 Query: 309 VTFRNNKNNEAFLDRVYIV--KVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 E R+ V ++P +I + + P + + Sbjct: 251 KEIAKGSFREDLYYRLNGVTLRIPPLRERKGDIDLIARQFLEKWGRSCGRPPMRIAKEAL 310 Query: 367 FSILSRLKEPENSSIYSK 384 L P N Sbjct: 311 E-RLRGYTWPGNVRELDN 327 >UniRef50_D2L101 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L101_9DELT Length = 466 Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 42/138 (30%), Gaps = 3/138 (2%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G A G++ E+ P+ V LL QE +LP + ILA +N+ Sbjct: 233 GLFLSAEGGVIVLDEIGDIPMSVQTKLLRVLQEREIRPVGSSRSLPVDVRILAATNQDLE 292 Query: 309 VTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 + E R+ + V++P ++I + + Sbjct: 293 ARIADKTFREDLYYRLNVLTVRLPPLRERRDDIPLLATAFLERACRETGIGEKEFSPEAL 352 Query: 367 FSILSRLKEPENSSIYSK 384 + R P N Sbjct: 353 AGLAGR-DWPGNVRELLN 369 >UniRef50_Q897M6 Transcriptional regulatory protein n=1 Tax=Clostridium tetani RepID=Q897M6_CLOTE Length = 567 Score = 75.7 bits (184), Expect = 6e-12, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 37/108 (34%), Gaps = 2/108 (1%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G A+ G + E+ P+ + LL QE + + +++ +N Sbjct: 347 GKFELADGGTIFLDEIGDMPLHMQAKLLRVLQEREVERIGATRSKKIDVRVISATNRDLE 406 Query: 309 VTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTHA 354 + + E R+ + V +P E+IKI + L Sbjct: 407 KMIKEGEFREDLYYRLNVVTVNIPPLRERREDIKILSEYLLEKISKKL 454 >UniRef50_B8DQ72 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Desulfovibrio RepID=B8DQ72_DESVM Length = 486 Score = 75.7 bits (184), Expect = 6e-12, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 45/123 (36%), Gaps = 7/123 (5%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G + +AN G + E+ P+ + LL QE G +P + I+A +N Sbjct: 232 GKIEQANGGTVFLDEIGDMPLGIQAKLLRLLQEKQIERLGGRQPIPVDVRIIAATNTDLE 291 Query: 309 VTFRNNKNNEAFLDRVYIVK--VPYCLRISEEIKIYEKLL-----NHSELTHAPCAPGTL 361 + + E R+ +V +P SE+I + ++ + P L Sbjct: 292 AAVADGRFREDLYYRLKVVTLWLPPLRERSEDIPPLARYFLARFSREMDMPNPGITPEAL 351 Query: 362 ETL 364 L Sbjct: 352 AYL 354 >UniRef50_B7H394 Nitrogen assimilation regulatory protein n=11 Tax=Acinetobacter RepID=B7H394_ACIB3 Length = 423 Score = 75.7 bits (184), Expect = 6e-12, Method: Composition-based stats. Identities = 38/270 (14%), Positives = 82/270 (30%), Gaps = 15/270 (5%) Query: 183 RLHEFGGDITKFRVVKVWPSILQQIAIAKTEPGDENNQDISALVGKVDIRKLEHYAQNDP 242 R G + + + +I +A +N S L G V Sbjct: 149 RGESGSGKELVAQAIHDYSQRKNKIFVAINCAALNSNILESELFGHVK-------GAFTG 201 Query: 243 DAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAH 302 + G RA G + E+ + P+++ LL + G + G + N I+ Sbjct: 202 AIRDHKGVFERAAGGTLFLDEIAEIPLELQAKLLRVLETGEFTPVGGEKPIQANVRIITA 261 Query: 303 SNESEWVTFRNNKNNEAFLDRVYIVK--VPYCLRISEEIKIYEKLLNHSELTHAPCAPGT 360 ++++ + + L R+ ++ +P +I + + T P Sbjct: 262 THKALREEAKAGRFRHDLLYRLRVIPIFIPPLRERKVDIPLIVDQILKESSTQLDTMPRH 321 Query: 361 LETLSRFSILSRLKEPENSSIYSKMRVY-----DGESLKDTDPKAKSYQEYRDYAGVDEG 415 + + +L P N +Y +G+ + + DY + E Sbjct: 322 VNQKAM-QVLLNYDWPGNVRELKNTLLYALTMANGKDEIEVEDLPNELLNAEDYVKLPET 380 Query: 416 MNGLSTRFAFKILSRVFNFDHVEVAANPVH 445 LS L + + ++ + Sbjct: 381 NTELSPENVQAALEKYNHNLNMVANIFGIS 410 >UniRef50_A0L4D6 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L4D6_MAGSM Length = 353 Score = 75.7 bits (184), Expect = 6e-12, Method: Composition-based stats. Identities = 22/145 (15%), Positives = 49/145 (33%), Gaps = 5/145 (3%) Query: 244 AYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHS 303 G AN G + E+ K+ +L QE + ++ N ++A + Sbjct: 85 VRDRPGKFVTANNGTIFLDEIGDMSPKLQVKMLRVLQERIVEPVGALRSVEVNVRVIAAT 144 Query: 304 NESEWVTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTL 361 +++ + E R+ + ++VP E++ + + C P + Sbjct: 145 HKNLSKEVEEGRFREDLFYRLNVVPIQVPPLRDRIEDVSSLVEHFMEKCAARSNCPP--V 202 Query: 362 ETLSRF-SILSRLKEPENSSIYSKM 385 + ++ SI R N + Sbjct: 203 KIGAQVMSIFQRYSWKGNVRELENL 227 >UniRef50_P38022 Arginine utilization regulatory protein rocR n=85 Tax=Firmicutes RepID=ROCR_BACSU Length = 461 Score = 75.7 bits (184), Expect = 6e-12, Method: Composition-based stats. Identities = 25/146 (17%), Positives = 43/146 (29%), Gaps = 7/146 (4%) Query: 244 AYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHS 303 A G +A+ G + E+ + + LL A QE P + I+A Sbjct: 223 AVDQPGLFEQAHGGTLLLDEINSLNLSLQAKLLRALQERKIRRIGSTKDTPIDVRIIATM 282 Query: 304 NESEWVTFRNNKNNEAFLDRVYIVK--VPYCLRISEEIKIYEKLLNHSELTHAPCAPGTL 361 NE + + R+ +V +P E+I + + + Sbjct: 283 NEDPIDAIAGERMRKDLYYRLSVVTLIIPPLRERKEDILLLASEFIQ---KNNHLFQMNV 339 Query: 362 ETLS--RFSILSRLKEPENSSIYSKM 385 E +S P N M Sbjct: 340 EHISDDVKQFFLSYDWPGNIRELEHM 365 >UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Bacteria RepID=A7HBA5_ANADF Length = 466 Score = 75.7 bits (184), Expect = 6e-12, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 72/231 (31%), Gaps = 11/231 (4%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G A+ G + E+ K+ LL +E ++ G + + I+A +N Sbjct: 232 GKFEAAHGGTLFLDEVGDIGPKLQLDLLRVLEERRFHRVGGNEPIEVDVRIIAATNRDLR 291 Query: 309 VTFRNNKNNEAFLDRVYIVK--VPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 K E R+ ++ VP E+I + + + + Sbjct: 292 RAAHEGKFREDLFYRLNVIPILVPPLRERREDIPLLVENFVERLSVEMKRRIEGVSPDAM 351 Query: 367 FSILSRLKEPENSSIYSKMR-----VYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLST 421 ++++ P N + V G ++ +D + E G + + Sbjct: 352 GALMAH-DWPGNVRELRNVLERGAVVATGTVIQLSDLGLPTRLEAASKPGTLASLEEVEK 410 Query: 422 RFAFKILSRV---FNFDHVEVAANPVHLFYVLEQQIEREQFPQEQAERYLE 469 R +L+ + + + V L+ + + R + A E Sbjct: 411 RHVAAVLAHANGNVSQSARILGIDRVTLYNKMRKYGLRRDGEEADAAHEGE 461 >UniRef50_C8WYU9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WYU9_DESRD Length = 489 Score = 75.3 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 21/139 (15%), Positives = 45/139 (32%), Gaps = 3/139 (2%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G AN G + E+ + ++ LL QE + G+ + + ++A +N + Sbjct: 235 GRFQHANGGTLFLDEIGEMRPELQAKLLRVLQEKEFEPVGGMKPVQADVRVIAATNINLE 294 Query: 309 VTFRNNKNNEAFLDRVYIV--KVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 + + R+ +V ++P E+I + P + Sbjct: 295 LAVNEGRFRTDLYYRLNVVPLEIPPLRDRVEDIPLLLDKFTRLFNRGKQSQPKRFSANAL 354 Query: 367 FSILSRLKEPENSSIYSKM 385 + L P N + Sbjct: 355 KA-LQEYPWPGNVRELKNI 372 >UniRef50_B4RA20 Sigma-54-dependent transcriptional regulator (Activator) protein n=13 Tax=Alphaproteobacteria RepID=B4RA20_PHEZH Length = 495 Score = 75.3 bits (183), Expect = 7e-12, Method: Composition-based stats. Identities = 37/243 (15%), Positives = 68/243 (27%), Gaps = 25/243 (10%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G AN G + E+ + P+ + LL A QE + ++ + I++ +N Sbjct: 230 GKFQEANGGTLFLDEVGELPLDMQVKLLRALQESEIDPIGSKRSVKVDVRIVSATNRDLS 289 Query: 309 VTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIY-----EKLLNHSELTHAPCAPGTL 361 + E R+ + ++ P E+I + AP TL Sbjct: 290 QAVAEGRFREDLYYRLNVFPIEAPSLRERKEDIPALVDAFIRRFNVEEGKAVVGAAPETL 349 Query: 362 ETLSRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLST 421 + L+ P N VY L D ++G++ Sbjct: 350 ------ACLTGFDWPGNVRQLENA-VYRAIVLADAPYL---------QPHDFPAISGIAA 393 Query: 422 RFAFKILSRVFNFDHVEVAANPVHLFYVLEQQIEREQFPQEQAERYLEFLKGYLIPKYAE 481 + + + L L Q + P A ++ L Sbjct: 394 PPPEALAPKAVTASAPGPVPSAGELAAELPQ--PQAPVPILDARGHIRPLDEIERDLIQH 451 Query: 482 FIG 484 I Sbjct: 452 AIE 454 >UniRef50_A4JRG9 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Proteobacteria RepID=A4JRG9_BURVG Length = 500 Score = 75.3 bits (183), Expect = 7e-12, Method: Composition-based stats. Identities = 33/217 (15%), Positives = 65/217 (29%), Gaps = 10/217 (4%) Query: 244 AYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHS 303 + ++G RAN G + E+ + LL QEG A+P + ++A + Sbjct: 264 VHDHAGLFQRANGGTIFLDEIGDTSLAFQVRLLRVLQEGEVRPVGATRAVPVDVRVIAAT 323 Query: 304 NESEWVTFRNNKNNEAFLDRV--YIVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTL 361 + + E R+ + +P S ++ L + H G Sbjct: 324 HRDLEREVEAGRFREDLYYRIATATLALPPLRERSGDLVPIAHRLLQAIAEHESRPAGLD 383 Query: 362 ETLSRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLST 421 ++L P N +Y +L D D + V G +G + Sbjct: 384 FARDALAVLLGYAWPGNIRELRN-EIYRAVALSDDD----LIRADAFSPKVLRGQSGPAA 438 Query: 422 RFAFKILSRVFNFDHVEVAANPVHLFYVLEQQIEREQ 458 R ++ + + + E + Sbjct: 439 RRPEAQIASAGTLQER---LDAMETMLIKEALLRHRW 472 >UniRef50_A9VII1 PAS modulated sigma54 specific transcriptional regulator, Fis family n=16 Tax=Bacillales RepID=A9VII1_BACWK Length = 553 Score = 75.3 bits (183), Expect = 7e-12, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 2/93 (2%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G + A G + E+ + P+ + LL QE Y G + + I+A +N Sbjct: 324 GKIELAQGGTLFLDEIGEMPLDMQVKLLRVLQERKYYRVGGEKEINIDFRIIAATNRDLQ 383 Query: 309 VTFRNNKNNEAFLDRVYIV--KVPYCLRISEEI 339 R E R+ +V +P E+I Sbjct: 384 EEMRKGTFREDLYYRLNVVSLHIPPLRERREDI 416 >UniRef50_A6C332 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=2 Tax=Bacteria RepID=A6C332_9PLAN Length = 1035 Score = 75.3 bits (183), Expect = 7e-12, Method: Composition-based stats. Identities = 27/182 (14%), Positives = 52/182 (28%), Gaps = 18/182 (9%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G AN G + E+ + LL QE + G L + ++ ++++ Sbjct: 789 GRFELANGGTLFLDEIGDISLDTQVKLLRVLQERAFERVGGSETLHVDVRLITATHQNLE 848 Query: 309 VTFRNNKNNEAFLDRVYIVKV--PYCLRISEEI-----KIYEKLLNHSELTHAPCAPGTL 361 E R+ ++ + P E+I ++ N + P + Sbjct: 849 QRITEGLFREDLYYRLNVISITLPPLRERREDIFELAFYFLKRTANRLGKRISHIDPDAI 908 Query: 362 ETLSRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLST 421 E L R P N + +++ A + E L Sbjct: 909 EA------LERAPWPGNIRQLENV-----IERAVVLAESEVITMKDLPADLLEQKKRLPA 957 Query: 422 RF 423 R Sbjct: 958 RV 959 >UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator Nla6 n=8 Tax=Cystobacterineae RepID=Q1D552_MYXXD Length = 484 Score = 75.3 bits (183), Expect = 7e-12, Method: Composition-based stats. Identities = 30/202 (14%), Positives = 60/202 (29%), Gaps = 23/202 (11%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 G A+ G + E+ + PI++ LL +EG G + + +L +N Sbjct: 228 PGVFEMAHGGTLFLDELGEIPIELQAKLLRVLEEGKLRRLGGKVEIEVDVRVLCATNRDL 287 Query: 308 WVTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIY-----EKLLNHSELTHAPCAPGT 360 +N + E R+ + + +P +++ I +K S + P Sbjct: 288 KQEIKNGRFREDLYFRLNVFQIHLPPLRERRDDVPILVQHFVDKFRGDSGKRVSGVHPEA 347 Query: 361 LETLSRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLS 420 +E +L P N + + + M G S Sbjct: 348 ME------VLKNYDWPGNIR-----ELRNAVERAVILCDGELITREHLPPD----MAGKS 392 Query: 421 T-RFAFKILSRVFNFDHVEVAA 441 R F++ + Sbjct: 393 PERHTFRLPFGLSLDAVEREYI 414 >UniRef50_A8ZZC1 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZZC1_DESOH Length = 926 Score = 75.3 bits (183), Expect = 8e-12, Method: Composition-based stats. Identities = 34/204 (16%), Positives = 57/204 (27%), Gaps = 24/204 (11%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G L A+QG + E+ + P + LL A QE G L + ++A +N Sbjct: 705 GLLELAHQGTLFIDEVGEIPKSIQVKLLRALQEKTIQRLGGTKPLFSDFRLIAATNRDLA 764 Query: 309 VTFRNNKNNEAFLDRVYIVK--VPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 + E R+ ++ VP ++I + L + Sbjct: 765 GQVAAGRFREDLYYRLNVIPITVPPLRERKQDIVLLAACFLRRHSLRHNRPAMVLSPEVQ 824 Query: 367 FSILSRLKEPENSSIYSK---------------MRVYDGESLKDTDPKA------KSYQE 405 L P N + + G + DP + + Sbjct: 825 -QRLCAYPWPGNVRELENVIERGVLLSTGDHLELDLPAGHTRPGADPFTDLPTLDELQRR 883 Query: 406 YRDYAGVDEGMNGLSTRFAFKILS 429 Y + G A KIL Sbjct: 884 YIHHVLEKTGGKIAGPDGAAKILG 907 >UniRef50_Q3AQY4 Transcriptional regulator, Fis family / DNA-binding protein Fis n=1 Tax=Chlorobium chlorochromatii CaD3 RepID=Q3AQY4_CHLCH Length = 415 Score = 75.3 bits (183), Expect = 8e-12, Method: Composition-based stats. Identities = 25/207 (12%), Positives = 57/207 (27%), Gaps = 17/207 (8%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G A++G + E+ + P++ L + G + + + I+A +N + + Sbjct: 93 GYFESADRGTIFLDEIGEMPLETQVKFLRVIESGEFQRVGASETIYSDARIIAATNRNMY 152 Query: 309 VTFRNNKNNEAFLDRVYIVK--VPYCLRISEEIKIYEKLLNHSELTHAPCA-----PGTL 361 E R+ V+ +P ++ + S P Sbjct: 153 QAVAEKNFREDLFYRLRSVELQIPPLRERGNDVLLLADHFMRSYERKHGIPFAGFSPDAA 212 Query: 362 ETLSRFSILSRLKEPENSS----IYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMN 417 E + R P N + + V + +D K + + + + Sbjct: 213 EM------MLRYPWPGNVRELRNLMESLLVLEKGREIGSDTLEKHLVQRNRHKSLVHDPS 266 Query: 418 GLSTRFAFKILSRVFNFDHVEVAANPV 444 I S + + Sbjct: 267 KSEKNELQVIFSNILQLRQEVSELRMM 293 >UniRef50_Q1D217 Sigma-54 dependent DNA-binding reponse regulator CrdA n=7 Tax=Cystobacterineae RepID=Q1D217_MYXXD Length = 498 Score = 75.3 bits (183), Expect = 8e-12, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 48/139 (34%), Gaps = 3/139 (2%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G A++G + E+ P + LL QEG G + ++A +N++ Sbjct: 225 GKFELAHEGTLFLDEIGDMPQAMQAKLLRVLQEGELERVGGAETHKVDVRVVAATNKNLE 284 Query: 309 VTFRNNKNNEAFLDRVYIVKV--PYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 + E R+ +V++ P E++ K P TL + Sbjct: 285 AEIAAGRFREDLYYRINVVQIHSPPLRERREDLPDLIKTFLDEACAKNGRRPLTLSPDAL 344 Query: 367 FSILSRLKEPENSSIYSKM 385 +++S P N + Sbjct: 345 -AVMSAYDYPGNVRELRNL 362 >UniRef50_D2QLL9 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QLL9_9SPHI Length = 875 Score = 75.3 bits (183), Expect = 8e-12, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 43/137 (31%), Gaps = 3/137 (2%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G AN G + E+ + P+++ LL A QE G + N I+A +N + Sbjct: 645 GKFELANGGTLFLDEIGELPLELQAKLLRAIQEKEIERVGGKGVILINTRIIAATNRNLQ 704 Query: 309 VTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 + R+ + + VP E+I P T + Sbjct: 705 QEVAAGRFRSDLYYRLNVFPIVVPPLRERQEDILPLTMHFLQKISKKLG-KPITNIANAS 763 Query: 367 FSILSRLKEPENSSIYS 383 L + P N Sbjct: 764 LQQLLQYPWPGNIRELE 780 >UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=B8FJT8_DESAA Length = 464 Score = 74.9 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 24/207 (11%), Positives = 51/207 (24%), Gaps = 3/207 (1%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G AN G + E+ + LL QE + + + ILA +N+ Sbjct: 234 GRFEVANGGTIFLDEIGDMSPNLQVKLLRVIQEQAFERIGSTRTMHVDIRILAATNKDLM 293 Query: 309 VTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 + E R+ + ++VP +I + + + + Sbjct: 294 EAVEKKEFREDLYYRLNVIPIEVPPLRDRKSDIPLLIDFFINKLAAEKERPVKRISQAAM 353 Query: 367 FSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLSTRFAFK 426 +++ P N + + E GL Sbjct: 354 NALMGH-HWPGNVRELENVVERVLILSSGDTIDKEDLPATILGLDSKEPEAGLKLPSGGI 412 Query: 427 ILSRVFNFDHVEVAANPVHLFYVLEQQ 453 + + ++ Q Sbjct: 413 RFDHAVEEYEKNLIVQALEEANWVKTQ 439 >UniRef50_Q3A356 Two component, sigma54 specific, transcriptional regulator, Fis family n=11 Tax=Desulfuromonadales RepID=Q3A356_PELCD Length = 471 Score = 74.9 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 19/139 (13%), Positives = 45/139 (32%), Gaps = 3/139 (2%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G +A+QG + E+ P+ + LL QE + + +++ +N + Sbjct: 242 GKFQQAHQGTIFLDEIGTMPLHLQMKLLRVLQEQEVEKVGSSKKIKLDVRVISATNCNLE 301 Query: 309 VTFRNNKNNEAFLDRVYIVKV--PYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 + R+ ++ + P E+I + + T ++ + Sbjct: 302 EEVEQGRFRADLYYRLNVIPIALPPLRERREDIALLARYFLQKTCTEMNQPLISITPGAM 361 Query: 367 FSILSRLKEPENSSIYSKM 385 + L P N + Sbjct: 362 -NCLENYHWPGNVRELENV 379 >UniRef50_UPI00016C44AF cetoacetate metabolism regulatory protein atoC n=5 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C44AF Length = 490 Score = 74.9 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 22/143 (15%), Positives = 48/143 (33%), Gaps = 3/143 (2%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G +A G + E+ P +L Q+ + G ++ + ++A +N Sbjct: 230 GKFEQAQGGTVFLDEIGDMPPAAQAKMLRLLQDQRFERVGGNESVQTDVRVIAATNRDLS 289 Query: 309 VTFRNNKNNEAFLDRVY--IVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 R++K E L R+ V +P + +I+ + ++ + Sbjct: 290 ALVRDSKFREDLLYRLNSFTVTLPPLRDRTGDIEPLVSHFVTAANRKLKKNVRGVDAAAL 349 Query: 367 FSILSRLKEPENSSIYSKMRVYD 389 ++L + P N Y Sbjct: 350 -AVLESHRWPGNVRELQNAMRYA 371 >UniRef50_Q47HA8 Helix-turn-helix, Fis-type n=4 Tax=cellular organisms RepID=Q47HA8_DECAR Length = 679 Score = 74.9 bits (182), Expect = 9e-12, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 46/142 (32%), Gaps = 3/142 (2%) Query: 246 GYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNE 305 G G +A+ G + E+ + P+ + LL Q+G I+A +N Sbjct: 442 GLPGKFEQADGGTLFLDEIGEMPLDMQPHLLRVLQDGVVVRLGDTKERKVAVRIIAATNR 501 Query: 306 SEWVTFRNNKNNEAFLDRVYIVK--VPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLET 363 + E R+ +V +P E+ + LN C P +L Sbjct: 502 DLQADSSTGRFREDLFHRLCVVSLLLPPLRERPEDTEAIIGHLNQRLARKYGCPPKSL-A 560 Query: 364 LSRFSILSRLKEPENSSIYSKM 385 L R + P N + Sbjct: 561 PEVLHHLLRYRWPGNIRELQNV 582 >UniRef50_O31551 Acetoin dehydrogenase operon transcriptional activator acoR n=4 Tax=Bacillus RepID=ACOR_BACSU Length = 605 Score = 74.9 bits (182), Expect = 9e-12, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 67/201 (33%), Gaps = 6/201 (2%) Query: 246 GYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNE 305 GY GA +ANQG + E+ + + LL QE G +P + ++A ++ Sbjct: 379 GYKGAFQKANQGTLFLDEIGEISHSMQVALLRVLQERKITPIGGTKEIPVDIRVIAATHC 438 Query: 306 SEWVTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLET 363 N K E R+++ +++P +E+I + Sbjct: 439 DLRELAENGKIREDLFYRLHVYPIELPPLRDRTEDIPDLFEYYKQKNHWPGDLPSDFCNV 498 Query: 364 LSRFSILSRLKEPENSSIYSKMRVYDG----ESLKDTDPKAKSYQEYRDYAGVDEGMNGL 419 L ++ ++E N +R DG ESL A + G+ Sbjct: 499 LKQWKWPGNIRELFNVFERLSIRFPDGRLRDESLPALLEAAGLPASSAEKKPAAAGVLTF 558 Query: 420 STRFAFKILSRVFNFDHVEVA 440 + ++ + V+ Sbjct: 559 REQIQKDMMIKALESAKGNVS 579 >UniRef50_C3WC69 Sigma-54 dependent transcriptional regulator n=5 Tax=Bacteria RepID=C3WC69_FUSMR Length = 591 Score = 74.9 bits (182), Expect = 9e-12, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 56/167 (33%), Gaps = 8/167 (4%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G AN G++ E+ + P + LL QE + N ++A +N++ Sbjct: 359 GKFELANNGVIFLDEIGEMPFFLQVKLLRVLQERTIVRIGSNKLINLNIRVIAATNKNLL 418 Query: 309 VTFRNNKNNEAFLDRVYIV--KVPYCLRISEEIKIYEKLLNHSELT-----HAPCAPGTL 361 + K E R+ ++ KVP E+I + LN Sbjct: 419 KLVKEGKFREDLYYRLNVIPLKVPALRERQEDILLLRDYLNTKYSKSLGSSKIVMDDDIN 478 Query: 362 ETLSRFSILSRLKEPEN-SSIYSKMRVYDGESLKDTDPKAKSYQEYR 407 E + S ++E EN M +G ++T K + Sbjct: 479 EIFLKHSWPGNVRELENSVEFLLNMSDENGNIDEETREDLKRNLKSN 525 >UniRef50_Q1NW39 Nif-specific regulatory protein n=2 Tax=Deltaproteobacteria RepID=Q1NW39_9DELT Length = 541 Score = 74.9 bits (182), Expect = 9e-12, Method: Composition-based stats. Identities = 23/139 (16%), Positives = 41/139 (29%), Gaps = 4/139 (2%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G A+ G + E+ + P+ + LL QE + G + + I+A +N S Sbjct: 290 GRFELADGGTLFLDEIGELPLALQAKLLRVLQERTFERLGGSRTIAVDVRIIAATNRSLE 349 Query: 309 VTFRNNKNNEAFLDRVYIVKV--PYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 R+ +V V P E+I + + Sbjct: 350 AGVEEGVFRADLYYRLNVVPVVLPPLRERREDIPLLLDHFLRESNR--HNRRRVKFAAAV 407 Query: 367 FSILSRLKEPENSSIYSKM 385 L+ P N + Sbjct: 408 IRRLNEYSWPGNVRELQNL 426 >UniRef50_C5EM87 Sigma54 specific transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EM87_9FIRM Length = 642 Score = 74.9 bits (182), Expect = 9e-12, Method: Composition-based stats. Identities = 33/200 (16%), Positives = 68/200 (34%), Gaps = 7/200 (3%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 G +A+ G + E+ + P+ LL QE G + + I+A +N++ Sbjct: 411 PGLFEQAHGGTLFLDEVSELPVSFQGKLLRVLQEREVRRVGGKKVVKIDVRIIAATNKNL 470 Query: 308 WVTFRNNKNNEAFLDRVYIVK--VPYCLRISEEIKIY-EKLLNHSELTHAPCAPGTLETL 364 + E L R+ ++ +P + E+I++ E L + CA E Sbjct: 471 KQMTLDGLFREDLLYRLDVLNLPLPPLRKRREDIRLLAEHYLMEYKEQFETCADHFTEDA 530 Query: 365 SRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGM--NGLSTR 422 ++LS N + + +DT + +E D + G R Sbjct: 531 --MTLLSSYPFMGNIRELRNIVERISVTAQDTAVQVLDVEESLGLGEYDRQIQTAGQVGR 588 Query: 423 FAFKILSRVFNFDHVEVAAN 442 + + + + + Sbjct: 589 IQDQAAAPAYIRNIQKEEIE 608 >UniRef50_Q30XH6 Putative transcriptional regulator, Fis family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30XH6_DESDG Length = 589 Score = 74.9 bits (182), Expect = 9e-12, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 46/136 (33%), Gaps = 3/136 (2%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G + A+ G + E+ V LL QE + + ++A +N+S Sbjct: 362 GRIQMAHGGTLFLDEIGDISPSVQLKLLRVLQEKEIERVGEGRPVKVDVRVVAATNKSLR 421 Query: 309 VTFRNNKNNEAFLDRVYIVKVPYC--LRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 K E R+ +V+V E+I + + H L++ ++ Sbjct: 422 ALVARGKFREDLYYRLKVVEVHLPALRERREDIPLLAEHFIEEFNEHFHRRVSGLDSSAQ 481 Query: 367 FSILSRLKEPENSSIY 382 +L + P N Sbjct: 482 -QLLVQYDWPGNVREL 496 >UniRef50_Q1IRB0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IRB0_ACIBL Length = 458 Score = 74.9 bits (182), Expect = 9e-12, Method: Composition-based stats. Identities = 22/144 (15%), Positives = 45/144 (31%), Gaps = 13/144 (9%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 SG AN+G + E+ + P+ + LL +E L + ++A +N Sbjct: 227 SGKFEMANRGTIFLDEIGELPLNLQSKLLRVLEEHVVERLGSTMPLQLDVRVVAATNREL 286 Query: 308 WVTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLL-----NHSELTHAPCAPGT 360 R+ + +++P E++ + + + AP Sbjct: 287 EQAVEAGAFRRDLYYRLAVFPIRIPPLRERGEDVILIAEHFLAHFRQELKKPRLSLAPDA 346 Query: 361 LETLSRFSILSRLKEPENSSIYSK 384 L + + L P N Sbjct: 347 L--AALRAHL----WPGNVRELQN 364 >UniRef50_B9M8I7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Geobacter sp. FRC-32 RepID=B9M8I7_GEOSF Length = 678 Score = 74.9 bits (182), Expect = 9e-12, Method: Composition-based stats. Identities = 22/140 (15%), Positives = 44/140 (31%), Gaps = 3/140 (2%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 G A+ G + E+ P+ + LL Q+ G+ A + I+A +N Sbjct: 463 PGKFELADCGTIFLDEIGDMPLALQSKLLRVIQDKEIERVGGVKARKVDVRIIAATNRDL 522 Query: 308 WVTFRNNKNNEAFLDRVYIVK--VPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLS 365 E R+ +V+ +P ++I + + + Sbjct: 523 KRMVTEGTFREDLYFRINVVELKIPPLRDRRKDIPLLADTFIRKYNNQLGRRVEGITEAA 582 Query: 366 RFSILSRLKEPENSSIYSKM 385 + L+R P N + Sbjct: 583 LEA-LTRYDWPGNIRELENI 601 >UniRef50_Q485M5 Flagellar regulatory protein A n=19 Tax=Gammaproteobacteria RepID=Q485M5_COLP3 Length = 509 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 60/174 (34%), Gaps = 12/174 (6%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G A G + E+ P + LL QE + G ++ N I+A +++ Sbjct: 230 GRFELAEGGTLFLDEIGDMPQPMQVKLLRVLQERTFERVGGSKSIKANVRIVAATHQDLE 289 Query: 309 VTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 + E R+ + + P E+I + K L T+ + Sbjct: 290 EMIKEGSFREDLFYRLNVFPIDTPSLRERKEDIPLLLKEL---LTRFEHEQNKTVRFTEK 346 Query: 367 FSILSRLKEP------ENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDE 414 +I S ++ P E S++ +M + G+ + D YQ A E Sbjct: 347 -AIESLMEHPWPGNVRELSNLIERMLIMYGDQIVDVTELPYKYQHVDVQAYNPE 399 >UniRef50_A0LMY2 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A0LMY2_SYNFM Length = 458 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 45/140 (32%), Gaps = 5/140 (3%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G + A +G + E+ ++ LL ++ + +P N ++A +N Sbjct: 226 GLIEAAERGTLFLDEIGNISPEMQVRLLRFLEDRKIRRIGDLREIPVNCRVIAATNVDLP 285 Query: 309 VTFRNNKNNEAFLDRVYIV--KVPYCLRISEEIKIYEKLLNHSELTHAPCAP-GTLETLS 365 E R+ +V ++P E+I + + S P + Sbjct: 286 EDVEAGNFREDLYYRLRVVTLRIPPLRERREDIPLLAQHFLQSFCESQNLPPVRLPQETI 345 Query: 366 RFSILSRLKEPENSSIYSKM 385 R+ LS P N Sbjct: 346 RW--LSEYPWPGNVRELKNA 363 >UniRef50_B4DAQ1 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DAQ1_9BACT Length = 987 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 52/185 (28%), Gaps = 3/185 (1%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G A+ G + E+ + P + LL QE + + + ++A +N Sbjct: 742 GRFELADGGTIFLDEVGELPPETQVKLLRVLQEQEFEPIGSTKTVKVDVRVIAATNRDLE 801 Query: 309 VTFRNNKNNEAFLDRVYIVK--VPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 R K R+ +V +P + + +I + + G + + Sbjct: 802 TMVREGKFRSDLFYRLNVVPLTMPPLRQRANDIPLLTMFFLEKFARKLGKSLGQIAEETM 861 Query: 367 FSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLSTRFAFK 426 + L + P N + + + + +G R Sbjct: 862 -ARLCQYPWPGNIRELQNVIERAVVLSTGSLLTVEKGALPGATGVMAQGPGWTPERAMID 920 Query: 427 ILSRV 431 + Sbjct: 921 AAEPL 925 >UniRef50_B3QXG8 Sigma54 specific transcriptional regulator, Fis family n=11 Tax=Chlorobiaceae RepID=B3QXG8_CHLT3 Length = 401 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 34/276 (12%), Positives = 86/276 (31%), Gaps = 20/276 (7%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G A+ G + E+ + P++ LL + G + + + + I+A +N Sbjct: 93 GYFETADNGSIFLDEIGEMPLETQVKLLRVLETGEFQRVGASNTVHCDVRIIAATNRDLQ 152 Query: 309 VTFRNNKNNEAFLDRVYIVK--VPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 + + E R+ V+ +P ++ + + H + ++ Sbjct: 153 KEVQEKRFREDLYFRLRTVELHLPPLRERQSDVLLLAEQFVHDFEKKHHR--KFVGFTAQ 210 Query: 367 FS-ILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLST---- 421 + +L R P N + D + ++Y + + E + Sbjct: 211 ATEMLLRHTWPGNIRELRNLIESLIVLEHDEKITPEKLEKYLNRSREKEALLPEKPHADL 270 Query: 422 ---RFAFKILSRVFN--------FDHVEVAANPVHLFYVLEQQIEREQFPQEQAERYLEF 470 + ++ L ++ + H+ +P +L + + + +E+ + Sbjct: 271 DEKQLIYRALIQLQSDMSQIKAMMSHLLEDPSPPATSLLLPEPRQPIERAEEEPANRQDS 330 Query: 471 LKGYLIPKYAEFIGKEIQTAYLESYSEYGQNIFDRY 506 L L Y + + E + RY Sbjct: 331 LPELLRSFYDKAADGGQAPSLSELERYAIEETLKRY 366 >UniRef50_C0Z5U4 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z5U4_BREBN Length = 548 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 29/178 (16%), Positives = 68/178 (38%), Gaps = 7/178 (3%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 G L A+ G + E+ + P+++ LL A QE + G + N I+A +N Sbjct: 297 PGKLELAHGGTLFLDEIGELPLELQVKLLRALQERQFYRVGGTEPITVNTRIVAATNRQL 356 Query: 308 WVTFRNNKNNEAFLDRVYI--VKVPYCLRISEEI-KIYEKLLNHSELTHAP----CAPGT 360 + + E R+ + +++P E++ ++ + ++ + H +P Sbjct: 357 EQMVADGRFREDLYYRLNVFSLEIPPLRERREDLPELVQIFIHEYSVAHDQSVPRISPEV 416 Query: 361 LETLSRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNG 418 ++ L ++ +++ N + +G L + P + + M G Sbjct: 417 MQALFEYTWPGNIRQLRNVIERLSILQENGVILPEHLPSVIRSHTEPTHVSLHTPMGG 474 >UniRef50_A5D2Z2 Transcriptional regulator n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D2Z2_PELTS Length = 562 Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 29/200 (14%), Positives = 54/200 (27%), Gaps = 10/200 (5%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G L AN G + E+ + P+ + LL Q+ G + + +A +N+ Sbjct: 329 GLLELANGGTVFLDEITELPLSLQVKLLQVIQDKKLIRVGGSKYISVDIRFVAATNKDIQ 388 Query: 309 VTFRNNKNNEAFLDRVYIVKV--PYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 E R+ ++ V P E+I + + T Sbjct: 389 RMVAEGLFREDLYYRLNVIPVIIPPLRYRQEDIPVLLEYFLEKLNTKYEKNKKFTPEA-- 446 Query: 367 FSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLSTR-FAF 425 IL P N + + + EG + R + Sbjct: 447 IEILRNYNWPGNVRELENL-----VERLLVTKEGNEITVSHLPEYIFEGKSRFPNRIYVL 501 Query: 426 KILSRVFNFDHVEVAANPVH 445 I + +E + Sbjct: 502 DICPLKEAVEEMEKQLFSMA 521 >UniRef50_A0L4D4 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=cellular organisms RepID=A0L4D4_MAGSM Length = 457 Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 27/220 (12%), Positives = 59/220 (26%), Gaps = 9/220 (4%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G +AN G + E+ + + + LL QE + G + + ++A +N Sbjct: 219 GKFLQANGGTIFLDEISEMTLNLQAKLLRVLQEKEVDPVGGKHPIALDVRVIASTNRDLK 278 Query: 309 VTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 + E R+ + V + + +++ + L + + + Sbjct: 279 EYAADGLFREDLYYRLNVFPVFITPLRQRPKDVVLLADLFRQRFIKELGRNDIPFDAAAM 338 Query: 367 FSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLSTRFAFK 426 + L R + P N + D G S Sbjct: 339 DA-LVRYRWPGNIRELEN------VVQRALLIAEDDAVSSHDLMIEVSGSAAPSPSMTRD 391 Query: 427 ILSRVFNFDHVEVAANPVHLFYVLEQQIEREQFPQEQAER 466 D + +E+ + R + R Sbjct: 392 ADEMGMALDGDHIHMPVGTTVREMEEILIRRTLDEVDGNR 431 >UniRef50_A6CEU3 Acetoacetate metabolism regulatory protein atoC n=2 Tax=Planctomycetaceae RepID=A6CEU3_9PLAN Length = 346 Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 43/140 (30%), Gaps = 7/140 (5%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G A+ G + E+ + LL QE + ++ + I+A +N Sbjct: 97 GRFEAAHGGTIFLDEINSVSFTLQVKLLRVLQEHEFERVGDTRSIQVDCRIVAATNRDLL 156 Query: 309 VTFRNNKNNEAFLDRVYIVKV--PYCLRISEEIKIYEKLLNH--SELTHAPCAPGTLETL 364 + E R+ ++ + P +E+I S P + E L Sbjct: 157 DEIEAERFREDLYYRLNVIPINLPPLRERAEDIPELVHFFAKQFSAEEKIPLPEFSEEVL 216 Query: 365 SRFSILSRLKEPENSSIYSK 384 S F S P N Sbjct: 217 STFKNYS---WPGNVRELQN 233 >UniRef50_Q12MS3 Sigma-54 factor, interaction region n=2 Tax=Alteromonadales RepID=Q12MS3_SHEDO Length = 538 Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 32/221 (14%), Positives = 63/221 (28%), Gaps = 13/221 (5%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G A+QG + E+ + +++ LL QEG + + I+A SN + Sbjct: 276 GKFELAHQGTLFLDEVGELSLELQAKLLRVIQEGEIQRIGLDRNIHVDVRIIAASNRNLL 335 Query: 309 VTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTHAPCAP-GTLETL- 364 + E R+ + + VP ++I + + + + T+ Sbjct: 336 QRVKEGLFREDLYHRLCVYPLNVPPLRERQDDIPLLCGNILTNLKHKIGLSSAKTVRLTQ 395 Query: 365 SRFSILSRLKEPENSSIYSK--MRVYDGESLKDTDPKAKSYQEYRDY-AGVDEGMNGL-- 419 + L P N MR S + + +G+ L Sbjct: 396 AAMQKLQGYPWPGNVRELQHVLMRAALKASAEAKGITVIQLHHLTFACEPMSQGLTELTA 455 Query: 420 ----STRFAFKILSRVFNFDHVEVAANPVHLFYVLEQQIER 456 S F + E P + ++ Sbjct: 456 FNSNSPDSNPSTSDETFAAANREEKVEPPVISRSFNDRVAD 496 >UniRef50_C1A7J8 Putative NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A7J8_GEMAT Length = 457 Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 43/138 (31%), Gaps = 3/138 (2%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G +A+ G + E+ +L Q+G G + + +LA +N+ Sbjct: 226 GKFEQAHGGTLFLDEIGDMSQSAQAKVLRVLQDGFVTRIGGSKPVQVDVRVLAATNKDLE 285 Query: 309 VTFRNNKNNEAFLDRVYIVK--VPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 + E R+ +V VP E+I + + ++ + Sbjct: 286 EEIAAGRFREDLYYRLNVVPITVPALRERREDIPLLVRHFLQQFAERDGLPARSISDEAL 345 Query: 367 FSILSRLKEPENSSIYSK 384 LS L P N Sbjct: 346 -QRLSELDWPGNVRELRN 362 >UniRef50_C1PFE6 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Bacillus coagulans 36D1 RepID=C1PFE6_BACCO Length = 610 Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 29/189 (15%), Positives = 65/189 (34%), Gaps = 10/189 (5%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G +A+ G + E+ + P + LL QE + + I+A +++ Sbjct: 394 GKFEQAHGGTLFLDEVAELPSAMQTALLRVLQERKVVPVGSAKEVSVDVRIIAATHKDLP 453 Query: 309 VTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 + K E R+Y+ V++P E++ + ++ + P ++ Sbjct: 454 KLVKEGKFREDLFYRLYVFPVRLPALRERKEDLPALIQYISRKKNQDVEIPPAVMKK--- 510 Query: 367 FSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLSTRFAFK 426 + P N M V + L + ++ + +Y + G+NG+ + Sbjct: 511 ---MQDYHWPGNIREL--MNVIENVRLLAVAGEEEAERYVDEYVSGETGLNGMEKQVTTL 565 Query: 427 ILSRVFNFD 435 D Sbjct: 566 NPREAIERD 574 >UniRef50_Q0SR73 Sigma-54 dependent transcriptional regulator n=1 Tax=Clostridium perfringens SM101 RepID=Q0SR73_CLOPS Length = 455 Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 49/140 (35%), Gaps = 5/140 (3%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 G A+ G + E+ + PI++ LL QEG G + +P N I+A +N++ Sbjct: 219 PGKFELADGGTIFLDEICEMPIEMQVTLLRVIQEGVVTRIGGKTQIPINVRIIAATNKNL 278 Query: 308 WVTFRNNKNNEAFLDRVYIV--KVPYCLRISEEIKIYEKLLNHSELTHAPC-APGTLETL 364 + E R+ ++ +P ++ I + + P + L Sbjct: 279 KEEIKKGTFREDLYYRLNVMPLHLPPLKDRLGDVPILINYFLNIKSQKLHKGIPNINQKL 338 Query: 365 SRFSILSRLKEPENSSIYSK 384 + I P N Sbjct: 339 YKKMIS--YCWPGNIRELEN 356 >UniRef50_A1VA02 Sigma54 specific transcriptional regulator, Fis family n=7 Tax=Desulfovibrionales RepID=A1VA02_DESVV Length = 578 Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 29/198 (14%), Positives = 53/198 (26%), Gaps = 3/198 (1%) Query: 244 AYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHS 303 G A+ G + E+ P+ LL + + I+A + Sbjct: 239 VRDRQGRFEAAHGGDLFLDEIGDLPLPTQVKLLRVLETKRIERVGDNHPREVDVRIIAAT 298 Query: 304 NESEWVTFRNNKNNEAFLDRVYIVKV--PYCLRISEEIKIYEKLLNHSELTHAPCAPGTL 361 N + R + E L R+ ++ V P E+I + + G L Sbjct: 299 NRNLGALVRAGRFREDLLFRINVIPVTLPALAARREDIPLLAAFFLRAITERDGRKAGGL 358 Query: 362 ETLSRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLST 421 + L P N Y D A+ + + G + L+ Sbjct: 359 TPAAL-RHLVAYTWPGNVRELRSAMEYACVVAGGGDIDAEHLPPHIIDGTPECGGHALAA 417 Query: 422 RFAFKILSRVFNFDHVEV 439 A + + Sbjct: 418 TVAERTGPDAAQEAPADE 435 >UniRef50_C4LCM0 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LCM0_TOLAT Length = 453 Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 40/100 (40%), Gaps = 2/100 (2%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G + A+ G + E+ P+++ LL QE G +P + +++ +N Sbjct: 231 GHIEAAHGGTLFLDEIGDLPLELQVNLLRFLQEKKITRVGGTELIPVDVRVISATNRDLR 290 Query: 309 VTFRNNKNNEAFLDRVYIVK--VPYCLRISEEIKIYEKLL 346 R+ + + R+ ++ +P E+I++ Sbjct: 291 EDIRSGRFRQDLFFRLCVLDLELPPLRERGEDIELLANHF 330 >UniRef50_B8DQY9 Transcriptional regulator, NifA subfamily, Fis Family n=8 Tax=Desulfovibrio RepID=B8DQY9_DESVM Length = 579 Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 21/143 (14%), Positives = 46/143 (32%), Gaps = 12/143 (8%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G A++G + E+ + P + LL Q+ + + I+A +N Sbjct: 283 GRFEEAHRGTIFLDEIGELPPGIQAKLLRVIQDREFERLGSNQTHRVDVRIVAATNRDLA 342 Query: 309 VTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTHA----PCAPGTLE 362 + + + R+ + ++VP ++++ AP L Sbjct: 343 LLSEQGRFRQDLYYRLCVFPIRVPSLRERPDDVERLLNHFLAKAARDYRRVITLAPDAL- 401 Query: 363 TLSRFSILSRLKEPENSSIYSKM 385 +L R + P N + Sbjct: 402 -----GLLRRHEWPGNVREMENL 419 >UniRef50_A4CKT3 Transcriptional regulator, NifA subfamily, Fis Family protein n=1 Tax=Robiginitalea biformata HTCC2501 RepID=A4CKT3_9FLAO Length = 791 Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 46/139 (33%), Gaps = 3/139 (2%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G A+ G + E+ + P+++ LL QEG G + I+A +N Sbjct: 569 GKFELADGGTLFLDEIGELPLEMQPKLLRFLQEGEIEVVGGTEVRKLDVRIIAATNRYLK 628 Query: 309 VTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 E R+ + ++VP E+I I + + + Sbjct: 629 EEVEKGDFREDLYFRINVFPIEVPPLRERKEDIPILVEHFMDKFNRKYGKNISFVTEEAM 688 Query: 367 FSILSRLKEPENSSIYSKM 385 S L + + P N + Sbjct: 689 -SQLKQYEWPGNIRELENL 706 >UniRef50_B8DQH7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DQH7_DESVM Length = 604 Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 57/185 (30%), Gaps = 6/185 (3%) Query: 243 DAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAH 302 G G A G + E+ P+ +L QEG+ G + +P + I+ Sbjct: 350 RRDGKPGLFETARGGTVLLDEIGDMPLASQAKMLRVMQEGSVRRVGGTAEVPVDVRIITA 409 Query: 303 SNESEWVTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGT 360 +N + + + R+ + + +P +I + + + Sbjct: 410 TNRTLERLVEEGRFRQDLYYRINVLPIHIPPLKERPGDIAVLAEHFLLGLAARLGGPVRS 469 Query: 361 LETLSRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLS 420 L + + L+ P N + D A+ + G G+ G S Sbjct: 470 LSPGAL-ARLAGHHWPGNVRELKNVVERAAILCPDDVVGARFILFAHELEG---GLFGES 525 Query: 421 TRFAF 425 R A Sbjct: 526 ARLAD 530 >UniRef50_Q1JY50 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JY50_DESAC Length = 455 Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 39/123 (31%), Gaps = 7/123 (5%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G AN G + E+ P+ LL QE G S + + I+A +N Sbjct: 225 GKFELANGGTLFLDEVGDLPLASQAKLLRVLQERKVQPLGGKSEVLIDVRIVAATNHILS 284 Query: 309 VTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIK-----IYEKLLNHSELTHAPCAPGTL 361 K E R+ + + VP E+I+ +K + L Sbjct: 285 DDVAGGKFREDLFYRLNVIHIDVPPLRERREDIEPLAEMFLDKFSTQMNKPVRHLSTEAL 344 Query: 362 ETL 364 L Sbjct: 345 NIL 347 >UniRef50_B8FXH0 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FXH0_DESHD Length = 703 Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 22/140 (15%), Positives = 42/140 (30%), Gaps = 3/140 (2%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 G A++G + E+ + + LL QE G + + I+A +N Sbjct: 482 PGKFELADKGTIFLDEIGDMSLGMQAKLLRVLQERELERLGGTEPIKVDVRIIAATNRDL 541 Query: 308 WVTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLS 365 +K R+ + + +P E+I + L + S Sbjct: 542 HKMVMEHKFRLDLYYRLNVLTIDLPPLRERKEDIGFIARGLIEKINKRLGTDIQGVRPES 601 Query: 366 RFSILSRLKEPENSSIYSKM 385 + L P N + Sbjct: 602 -ITHLCAYDWPGNIRELENI 620 >UniRef50_D0TB92 Two-component system response regulator n=1 Tax=Bacteroides sp. 2_1_33B RepID=D0TB92_9BACE Length = 455 Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 2/100 (2%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G RAN G + E+ + P+ LL +E G A+P N I+A +N + Sbjct: 227 GTFERANGGTLFLDEIGELPLDAQVKLLRVLEERKITRIGGKKAIPVNVRIVAATNRNLE 286 Query: 309 VTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLL 346 R K L R+ + +++P E+I + Sbjct: 287 EEVRLGKFRLDLLYRLNVFTIQLPPLRERKEDIPLLAAFF 326 >UniRef50_C6PSK3 Putative sigma54 specific transcriptional regulator n=2 Tax=Clostridium RepID=C6PSK3_9CLOT Length = 607 Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 34/231 (14%), Positives = 72/231 (31%), Gaps = 18/231 (7%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G +AN G + E+ P+ + +L QE S + N +++ +N Sbjct: 362 GLFEQANNGTIFLDEIGDMPLSLQARILRVLQERQVMRIGSQSVIDINVRVISATNRKLM 421 Query: 309 VTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 K E R+ + + +P ++I K + Sbjct: 422 EMVDQGKFREDLFYRLNVLPINIPPLRERKDDIISTMKDFITRKELKISDE--------V 473 Query: 367 FSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLSTRFAFK 426 +IL + P N + Y E + D+ ++ Y +D + Sbjct: 474 KNILLNYRWPGNVRELQNVAAYI-ELMSDSTVNLENLPFYILNKNMDFER-------ELQ 525 Query: 427 ILSRVFNFDHVEVAANPVHLFYVLEQQIEREQFPQEQAERYLEFLKGYLIP 477 +++ N ++ V L + + R+ ERY+ + + Sbjct: 526 MINSKCNLNNAVEIIKIVEEKNHLNEGVGRKNIEAILKERYISVTEAEVRR 576 >UniRef50_C2X5C8 Carbamoyl-phosphate synthase, large subunit n=4 Tax=Bacillales RepID=C2X5C8_BACCE Length = 698 Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 27/161 (16%), Positives = 49/161 (30%), Gaps = 8/161 (4%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G A+ G + E+ AP+ + LL QE G +P N ++A +N + Sbjct: 430 GLFELAHNGTIFLDEIGDAPLSIQAALLRVLQERQVMRIGGNRVIPINVRVIAATNRNLN 489 Query: 309 VTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 E R+ + + +P E++ I + P Sbjct: 490 SMMSKGAFREDLYYRLNVLPLNIPNLRERQEDLFILINYFFYDNGRKLRFTPEVK----- 544 Query: 367 FSILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYR 407 ++L P N Y ++ K + E Sbjct: 545 -NVLLNYSWPGNIRELENFIKYLMVIVEGDTVKLQHIPERI 584 >UniRef50_A6VS90 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VS90_MARMS Length = 663 Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 71/191 (37%), Gaps = 11/191 (5%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G + RA+ G + E+ + P+ V LL QE A P + +++ +N + Sbjct: 441 GLIRRAHHGTLFLDEIGEMPMAVQSRLLRVLQERVVTPLGSTEAFPVDIKLISATNRTLK 500 Query: 309 VTFRNNKNNEAFLDRVY--IVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 + + + R+ +++P +++ ++ K L+ PG + + Sbjct: 501 DEVKEGRFRQDLYYRISGLNIELPALRERTDKAELI-KYLHERLRKE---EPGPALSQAM 556 Query: 367 FSILSRLKEPENSS-----IYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLST 421 +L P N + M + D E L++ + + D+ + G S Sbjct: 557 LDLLVTHPWPGNMRQLAHVLKVGMAMADEEELEEWHLPDDFFDDLDVMTQADDSVEGSSQ 616 Query: 422 RFAFKILSRVF 432 R + L ++ Sbjct: 617 REQEEPLEQLI 627 >UniRef50_D2U436 Two-component system, NtrC family, nitrogen regulation response regulator n=2 Tax=Proteobacteria RepID=D2U436_9ENTR Length = 475 Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 49/140 (35%), Gaps = 3/140 (2%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 G +A+ G + E+ P+ + LL EG + G + + + I+A +++ Sbjct: 227 QGRFEQAHGGSLFLDEIGDMPLDIQTRLLRVLAEGQFYRVGGYTPIKVDVRIIAATHQCL 286 Query: 308 WVTFRNNKNNEAFLDRVYIVKV--PYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLS 365 + K E R+ ++++ P +E+I + H L Sbjct: 287 EQLVQEGKFREDLFHRLNVIRIPLPPLRERTEDIPHLARYFLHQTAQQLGVESKIL-APQ 345 Query: 366 RFSILSRLKEPENSSIYSKM 385 +IL L N + Sbjct: 346 TETILMSLPWSGNVRQLENV 365 >UniRef50_A3ER00 Transcriptional regulator, NifA, Fis Family n=3 Tax=Leptospirillum RepID=A3ER00_9BACT Length = 553 Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 47/143 (32%), Gaps = 12/143 (8%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 G +A++G + E+ + V LL QE G +P + I+A +N + Sbjct: 287 PGKFEQAHEGTLFLDEVGEISPAVQVKLLRVLQERVVERVGGTKTIPVDVRIIAATNRNL 346 Query: 308 WVTFRNNKNNEAFLDRVYIVKV--PYCLRISEEIKIY----EKLLNHSELTHAPCAPGTL 361 R N+ E R+ +V + P + E+I + N +P Sbjct: 347 EEAIRKNQFREDLYYRLNVVPIYLPPLRQRKEDIPLLVNHFLGRFNQENGRSMTISPEA- 405 Query: 362 ETLSRFSILSRLKEPENSSIYSK 384 S L P N Sbjct: 406 -----ISALIEHDWPGNVRELEN 423 >UniRef50_Q1Q1B9 Strong similarity to sigma 54 response regulator protein n=3 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1B9_9BACT Length = 469 Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 19/139 (13%), Positives = 44/139 (31%), Gaps = 3/139 (2%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G A++G + E+ + LL Q+G G ++ + I+A +NE+ Sbjct: 232 GLFHHAHKGTIFLDEIGETSASTQVKLLRFLQDGEIRQVGGNKSIHVDVRIIAATNENLE 291 Query: 309 VTFRNNKNNEAFLDRVYIVKVPYC--LRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 + + R+ ++++ E+I + + Sbjct: 292 RAVNQGRFRKDLFYRINVIRIHLPQLKERKEDIPLLVNYFLELYTDKLKKDKRVFSGSAM 351 Query: 367 FSILSRLKEPENSSIYSKM 385 ++L P N + Sbjct: 352 -AVLLNYDWPGNIRELQNI 369 >UniRef50_D2MK88 Formate hydrogenlyase transcriptional activator n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MK88_9BACT Length = 447 Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 47/142 (33%), Gaps = 5/142 (3%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G RAN + E+ P+ + LL A + G G +P + I+A ++ Sbjct: 207 GKFERANNSTLFLDEIGDMPLSLQVKLLRAVETGEIERIGGTKPIPVDIRIIAATHCKLV 266 Query: 309 VTFRNNKNNEAFLDRVYIVKV--PYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 + + + R+ V + P E+I++ K A + + Sbjct: 267 QSVESGSFRQDLYYRLNTVSIALPPLRERPEDIRVLAKHFVEKHSGTF--AKRVTKVIPE 324 Query: 367 -FSILSRLKEPENSSIYSKMRV 387 F+ L P N + Sbjct: 325 TFTCLQNYPWPGNIRELENALI 346 >UniRef50_C6QTT1 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Geobacillus sp. Y4.1MC1 RepID=C6QTT1_9BACI Length = 614 Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 2/104 (1%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G +AN G + E+ + P ++ LL QE G +P + ++ ++ + Sbjct: 397 GKFVQANGGTIFLDEIGEIPPEMQIALLRVLQEREVVPIGGTKPIPVDIRVITATHCDLY 456 Query: 309 VTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEKLLNHSE 350 R K E R+Y+ +KVP E+I + Sbjct: 457 QLVREGKLREDLFYRIYVYPIKVPALRERKEDIPFLIQYYCQKN 500 >UniRef50_B8D1H9 Putative PAS/PAC sensor protein n=1 Tax=Halothermothrix orenii H 168 RepID=B8D1H9_HALOH Length = 877 Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 22/140 (15%), Positives = 45/140 (32%), Gaps = 4/140 (2%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 G + +A++G + E+ + P+ + LL QE G+ + + ++A +N Sbjct: 654 PGLIEKADRGTLFLDEIGEMPLNMQAKLLQVLQERKLTRIGGVKPVKIDFRLIAATNRDL 713 Query: 308 WVTFRNNKNNEAFLDRVYIVK--VPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLS 365 R + R+ +V +P + E+I K Sbjct: 714 RQMVRQKYFRQDLFYRLNVVPLYIPPLRKRPEDILSLIKYFLDQYCEKYNKQIKLTRDAE 773 Query: 366 RFSILSRLKEPENSSIYSKM 385 L P N + + Sbjct: 774 EL--LLSYSWPGNVRELTNL 791 >UniRef50_Q3A5A0 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Deltaproteobacteria RepID=Q3A5A0_PELCD Length = 470 Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 28/206 (13%), Positives = 66/206 (32%), Gaps = 9/206 (4%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G L A G + E+ + LL QE + G+ + + I+A ++ Sbjct: 234 GRLQYAEGGTLFLDEIGDMKASLQAKLLRVLQEKEFEPVGGVKPVSVDVRIVAATHRDLE 293 Query: 309 VTFRNNKNNEAFLDRVYIV--KVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 + + E R+ ++ ++P + E+I + + + Sbjct: 294 KSVAEGRFREDLYYRLNVIPLQIPPLRKRKEDISLLIERFVGIYNRKKKNPFKGFSDDAL 353 Query: 367 FSILSRLKEPENSS----IYSKMRVYDGESLKDTDPKAKSYQ--EYRDYAGVDEGMNGLS 420 + L + P N + +M ++ + YQ + V E N +S Sbjct: 354 QA-LKQYPWPGNVRELENLVQRMSIFFAGQSVSRKDLPEKYQGCDEAQQQPVQEQENSIS 412 Query: 421 TRFAFKILSRVFNFDHVEVAANPVHL 446 + + N ++ +++ Sbjct: 413 LEDGGVDFNLLVNRFENQLILQALNV 438 >UniRef50_A6CFV8 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CFV8_9PLAN Length = 321 Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 45/138 (32%), Gaps = 3/138 (2%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G + AN+G + E+ P + LL QE + I+A +N Sbjct: 127 GLVMHANKGTLFLDEIGDMPPEAQQCLLRMLQEKRIRPVGSQVEADIDVRIVAATNVLLD 186 Query: 309 VTFRNNKNNEAFLDRVYIVK--VPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR 366 R+ K E R+ +++ VP + E++ + H P T S Sbjct: 187 EAVRDGKFREDLFYRLDVIRVNVPPLRQRPEDVFLLFGHFTKRLAKHYGLEP-PTFTDSF 245 Query: 367 FSILSRLKEPENSSIYSK 384 L + P N Sbjct: 246 LDALLEYEWPGNVRQLEN 263 >UniRef50_B8J0D0 Sigma54 specific transcriptional regulator, Fis family n=5 Tax=Desulfovibrionaceae RepID=B8J0D0_DESDA Length = 379 Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 20/139 (14%), Positives = 43/139 (30%), Gaps = 3/139 (2%) Query: 248 SGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESE 307 G A+ G + E+ + + + +L QE G + + I+A +N Sbjct: 93 PGRFELADGGTIFLDEIGEMDLSLQVKILRVLQEKEIERVGGSGSKKVDVRIVAATNRDL 152 Query: 308 WVTFRNNKNNEAFLDRVYIV--KVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLS 365 + E R+ ++ +P ++ + + L+ + Sbjct: 153 EAEVAAGRFREDLYYRLNVIPLHLPPLRERGGDVLVLARHFLTHFCGKKKRPVLVLDDDA 212 Query: 366 RFSILSRLKEPENSSIYSK 384 R +LS P N Sbjct: 213 R-RVLSAYTWPGNVRELEN 230 >UniRef50_B2JEB5 Two component, sigma54 specific, transcriptional regulator, Fis family n=68 Tax=Betaproteobacteria RepID=B2JEB5_BURP8 Length = 503 Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 46/142 (32%), Gaps = 12/142 (8%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G RAN G + E+ + PI++ LL + G + + + ++A +N Sbjct: 262 GYFERANGGTLFLDEITEMPIELQVKLLRVLETGMFMRVGTTKEIETDVRLIAATNRDPE 321 Query: 309 VTFRNNKNNEAFLDRVYI--VKVPYCLRISEEIKIYEK----LLNHSELTHAPCAPGTLE 362 K R+ + + +P +++++ + LN T P E Sbjct: 322 QAVLEGKLRLDLYHRLNVFPISLPPLRERGKDVELLAQSFLDELNEQHGTKKHFPPAVRE 381 Query: 363 TLSRFSILSRLKEPENSSIYSK 384 L P N Sbjct: 382 M------LLSYPWPGNVRELKN 397 >UniRef50_C5DAI7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=4 Tax=Geobacillus RepID=C5DAI7_GEOSW Length = 569 Score = 74.1 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 48/143 (33%), Gaps = 12/143 (8%) Query: 249 GALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEW 308 G L A++G + E+ + P+ + LL QE + I+A +N++ Sbjct: 346 GLLELADKGTIMLDEIGEMPLSLQVKLLRVLQEKQVQRIGSHKTKKLDVRIIAATNQNLK 405 Query: 309 VTFRNNKNNEAFLDRVYIVK--VPYCLRISEEIKIYEKLLNHSELTHA----PCAPGTLE 362 K E R+ +++ +P E+I+ +P T E Sbjct: 406 ELISQGKFREDLYYRLQVIEMYIPPLAERPEDIEPLIDHYFSFYCKLYRINKHLSPKTKE 465 Query: 363 TLSRFSILSRLKEPENSSIYSKM 385 IL R P N + Sbjct: 466 ------ILQRYHWPGNVRELKNL 482 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.309 0.118 0.265 Lambda K H 0.267 0.0355 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,695,047,003 Number of Sequences: 3077464 Number of extensions: 94203381 Number of successful extensions: 436071 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 1987 Number of HSP's successfully gapped in prelim test: 712 Number of HSP's that attempted gapping in prelim test: 431854 Number of HSP's gapped (non-prelim): 4147 length of query: 644 length of database: 1,040,396,356 effective HSP length: 135 effective length of query: 509 effective length of database: 624,938,716 effective search space: 318093806444 effective search space used: 318093806444 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 96 (41.8 bits)