232 c1tndA_ Probab=97.39   E-value=0.012  Score=36.37  Aligned_columns=227  Identities=14%

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHH-------------------------------------CCCCCCCCCCCCCCEEEEEE
Q ss_conf             28138989822688799999997-------------------------------------09865768998410268999
Q batch____        67 RLEMVLAIVGTMKAGKSTTINAI-------------------------------------VGTEVLPNRNRPMTALPTLI  109 (742)
Q Consensus        67 ~~~~~iav~G~~saGKSslinal-------------------------------------lg~~~lp~~~~~~T~~~~~i  109 (742)
                      ..++.|.++|.-.|||||++.-+                                     +|.++               
T Consensus         1 ~~~ikiLlLG~~eSGKST~~KQ~k~i~~~~f~~~E~~~~~~~I~~Nii~~~~~ll~~~~~~~i~~---------------   65 (323)
T c1tndA_           1 ARTVKLLLLGAGESGKSTIVKQMKIIHQDGYSLEECLEFIAIIYGNTLQSILAIVRAMTTLNIQY---------------   65 (323)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC---------------
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---------------
T ss_conf             95489999738988888999999999678999899998799999999999999999998709998---------------


Q ss_pred             EECCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf             73788751378427603577776655544200221000011000011123334201220355555333333331011134
Q batch____       110 RHTPGQKEPVLHFSHVAPIDCLIQQLQQRLRDCDIKHLTDVLEIDKDMRALMQRIENGVAFEKYYLGAQPIFHCLKSLND  189 (742)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (742)
                                    +..+.......+...............+...-.....-................+.....+...+.
T Consensus        66 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~I~~LW~d~~iq~~~~r~~e~~l~d~~~YFl~~i~R  131 (323)
T c1tndA_          66 --------------GDSARQDDARKLMHMADTIEEGTMPKEMSDIIQRLWKDSGIQACFDRASEYQLNDSAGYYLSDLER  131 (323)
T ss_dssp             --------------SSTTHHHHHHHHHHHTTTSCTTCCCHHHHHHHHHHHHSHHHHHHHTTGGGSCCCTTHHHHHTTHHH
T ss_pred             --------------CCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf             --------------882136879998730134562225989999999985698999998735410422224566766787


Q ss_pred             HHHHHCCCCCCHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCEEEEEECCC
Q ss_conf             43321022320013332012567750388998416853458869987889889760138999998730289999984588
Q batch____       190 LVRLAKALDVDFPFSAYAAIEHIPVIEVEFVHLAGLESYPGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYT  269 (742)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~lvD~PG~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~  269 (742)
                      +....-.-....-........++......+.        ...+.++|+.|-..     .......|...+++|+||++.+
T Consensus       132 I~~~~Y~Pt~~Dil~~r~~T~Gi~~~~f~~~--------~~~~~~~DvgGq~~-----~R~kW~~~f~~v~~iifvv~ls  198 (323)
T c1tndA_         132 LVTPGYVPTEQDVLRSRVKTTGIIETQFSFK--------DLNFRMFDVGGQRS-----ERKKWIHCFEGVTCIIFIAALS  198 (323)
T ss_dssp             HTSTTCCCCHHHHHHCCCCCCSEEEEEEEET--------TEEEEEEEECCSHH-----HHGGGGGGCTTCSEEEEEEEGG
T ss_pred             HCCCCCCCCCCCEEEEECCCCCEEEEEEEEC--------CEEEEEEECCCCCC-----CCHHHHHHHCCCCEEEEEEECH
T ss_conf             4154547786445898535024179999735--------70488997789874-----3323688736998899997811


Q ss_pred             CCCC-----------HHHHHHHHHHHHCCC--CCCEEEEEECHHCCC---------------CCHHHHHHHHHHHHHHHH
Q ss_conf             7679-----------758999999850268--781899983412034---------------774539999999999987
Q batch____       270 QLKS-----------ISDEEVREAILAVGQ--SVPLYVLVNKFDQQD---------------RNSDDADQVRALISGTLM  321 (742)
Q Consensus       270 ~~~~-----------~~~~~~~~~~~~~~~--~~~~~~v~nk~D~~~---------------~~~~~~~~~~~~~~~~l~  321 (742)
                      ....           .....++..+.....  ...+++++||.|.+.               .++.....+..++...+.
T Consensus       199 d~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~~iil~lNK~Dif~~Kl~~~~l~~~fp~y~g~~~~~~~~~~i~~~F~  278 (323)
T c1tndA_         199 AYDMVLVEDDEVNRMHESLHLFNSICNHRYFATTSIVLFLNKKDVFSEKIKKAHLSICFPDYNGPNTYEDAGNYIKVQFL  278 (323)
T ss_dssp             GGGCBCSSCTTSBHHHHHHHHHHHHHTCSGGGSCEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCCCHHHHHHHHHHHHH
T ss_pred             HHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHCCCCEEEEECCHHHHHHHHCCCCHHHCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             41442225674035899999999982796877997899932558998760448834406788997898999999999999


Q ss_pred             HCCCCCCC----EEECCH
Q ss_conf             43677655----664132
Q batch____       322 KGCITPQQ----IFPVSS  335 (742)
Q Consensus       322 ~~~~~~~~----v~~~s~  335 (742)
                      ........    ++++++
T Consensus       279 ~~~~~~~~r~~~~~~t~a  296 (323)
T c1tndA_         279 ELNMRRDVKEIYSHMTCA  296 (323)
T ss_dssp             TTCTTBTTBCCEEEEECT
T ss_pred             HHHCCCCCCEEEEEEEEE
T ss_conf             852377897389999851