246 c1cipA_ Probab=97.14   E-value=0.0059  Score=38.53  Aligned_columns=236  Identities=14%

Q ss_pred             CCEEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCEEEE--------------------------E
Q ss_conf             81389898226887999999970986576899841026899973788751378--------------------------4
Q batch____        68 LEMVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTALPTLIRHTPGQKEPVL--------------------------H  121 (742)
Q Consensus        68 ~~~~iav~G~~saGKSslinallg~~~lp~~~~~~T~~~~~i~~~~~~~~~~~--------------------------~  121 (742)
                      .++.|.++|.-.|||||++--+                  ++-|+++......                          .
T Consensus         1 k~ikiLlLG~~eSGKST~~kQ~------------------r~l~~~~~~~~E~~~~~~~I~~Nii~~~~~ll~a~~~~~i   62 (316)
T c1cipA_           1 REVKLLLLGAGESGKSTIVKQM------------------KIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKI   62 (316)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHH------------------HHHHSCCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CEEEEEEECCCCCCHHHHHHHH------------------HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             9039999758998888999999------------------9985889998999987999999999999999999986099


Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCH
Q ss_conf             27603577776655544200221000011000011123334201220355555333333331011134433210223200
Q batch____       122 FSHVAPIDCLIQQLQQRLRDCDIKHLTDVLEIDKDMRALMQRIENGVAFEKYYLGAQPIFHCLKSLNDLVRLAKALDVDF  201 (742)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (742)
                      .............+...............+...-.....-................+.....+...+.+....-.-...+
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~I~~LW~d~~iq~~~~r~~~~~l~d~~~YFl~~~~rI~~~~Y~Pt~~D  142 (316)
T c1cipA_          63 DFGDAARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQD  142 (316)
T ss_dssp             CCSSTTHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHCHHHHHHHTTGGGSCCCTTHHHHHTTHHHHTSTTCCCCHHH
T ss_pred             CCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             98871017889998724677764337889999999996798999998744302543555667754888613677868410


Q ss_pred             HHHHHHCCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCEEEEEECCCC-----------
Q ss_conf             133320125677503889984168534588699878898897601389999987302899999845887-----------
Q batch____       202 PFSAYAAIEHIPVIEVEFVHLAGLESYPGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQ-----------  270 (742)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~lvD~PG~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~-----------  270 (742)
                      -........++......+.        ...+.++|+.|-..     .......|...+++|+||++.+.           
T Consensus       143 il~~r~~T~Gi~~~~f~~~--------~~~~~~~DvgGq~~-----~R~kW~~~f~~~~~iif~v~ls~~d~~~~e~~~~  209 (316)
T c1cipA_         143 VLRTRVKTTGIVETHFTFK--------DLHFKMFDVGGQRS-----ERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEM  209 (316)
T ss_dssp             HHTCCCCCCSEEEEEEEET--------TEEEEEEEECCSGG-----GGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEE
T ss_pred             EEEEECCCCCEEEEEEEEC--------CEEEEEEECCCCCC-----CHHHHHHHHCCCCEEEEEEECHHCCCCCCCCCCC
T ss_conf             2787636024089999852--------60688985688862-----1023788717997799997701302222256640


Q ss_pred             CCCHHHHHHHHHHHHC--CCCCCEEEEEECHHCC----------------CCCHHHHHHHHHHHHHHHHHCCCCCCC---
Q ss_conf             6797589999998502--6878189998341203----------------477453999999999998743677655---
Q batch____       271 LKSISDEEVREAILAV--GQSVPLYVLVNKFDQQ----------------DRNSDDADQVRALISGTLMKGCITPQQ---  329 (742)
Q Consensus       271 ~~~~~~~~~~~~~~~~--~~~~~~~~v~nk~D~~----------------~~~~~~~~~~~~~~~~~l~~~~~~~~~---  329 (742)
                      .--.....++..+...  .....+++++||.| +                -.+....+...+++...+.......+.   
T Consensus       210 nrl~esl~~f~~i~~~~~~~~~~iil~~nK~D-if~~Kl~~~~l~~~fp~y~g~~~~~~~~~~i~~~F~~~~~~~~~r~~  288 (316)
T c1cipA_         210 NRMHESMKLFDSICNNKWFTDTSIILFLNKKD-LFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEI  288 (316)
T ss_dssp             EHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH-HHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCE
T ss_pred             HHHHHHHHHHHHHHCCHHHCCCCEEEEECCHH-HHHHHHCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEE
T ss_conf             15999999999983895776997899912558-99876122880111768888579899999999999986328889738


Q ss_pred             -EEECCH
Q ss_conf             -664132
Q batch____       330 -IFPVSS  335 (742)
Q Consensus       330 -v~~~s~  335 (742)
                       ++++++
T Consensus       289 ~~~~t~a  295 (316)
T c1cipA_         289 YTHFTCA  295 (316)
T ss_dssp             EEEECCT
T ss_pred             EEEEEEE
T ss_conf             9999851