BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (290 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q83IR6 Ribosomal large subunit pseudouridine synthase F... 581 e-165 UniRef50_Q8Z1V3 Ribosomal large subunit pseudouridine synthase F... 496 e-139 UniRef50_Q7MMX9 Pseudouridine synthase n=43 Tax=Vibrionaceae Rep... 305 2e-81 UniRef50_C7PFL3 Pseudouridine synthase n=3 Tax=Bacteria RepID=C7... 288 2e-76 UniRef50_A9KPL1 Pseudouridine synthase n=63 Tax=Bacteria RepID=A... 281 2e-74 UniRef50_A6EPE0 Pseudouridine synthase n=1 Tax=unidentified euba... 279 1e-73 UniRef50_Q3IC94 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q3... 271 2e-71 UniRef50_C9L6I1 Pseudouridine synthase n=1 Tax=Blautia hansenii ... 267 3e-70 UniRef50_C6J9Y4 Pseudouridine synthase n=2 Tax=Clostridiales Rep... 263 7e-69 UniRef50_Q21MN5 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q2... 258 1e-67 UniRef50_A5ZYR1 Pseudouridine synthase n=2 Tax=Clostridiales Rep... 244 2e-63 UniRef50_C5EVC9 Pseudouridine synthase n=6 Tax=Clostridiales Rep... 238 2e-61 UniRef50_C8P160 Pseudouridine synthase n=1 Tax=Erysipelothrix rh... 230 4e-59 UniRef50_A0PYR9 Pseudouridine synthase n=9 Tax=Clostridium RepID... 221 2e-56 UniRef50_A9NFY3 Pseudouridine synthase n=1 Tax=Acholeplasma laid... 218 2e-55 UniRef50_C0D9T3 Pseudouridine synthase n=1 Tax=Clostridium aspar... 207 3e-52 UniRef50_C3BQR1 Pseudouridine synthase n=3 Tax=Bacillus RepID=C3... 205 2e-51 UniRef50_Q31H34 Pseudouridine synthase n=1 Tax=Thiomicrospira cr... 199 1e-49 UniRef50_UPI0001BC345F ribosomal large subunit pseudouridine syn... 189 1e-46 UniRef50_A6LUE3 Pseudouridine synthase n=3 Tax=Clostridium RepID... 177 3e-43 UniRef50_Q3IDR5 Pseudouridine synthase n=3 Tax=Alteromonadales R... 169 1e-40 UniRef50_A8SLU4 Pseudouridine synthase n=1 Tax=Parvimonas micra ... 166 1e-39 UniRef50_A8ZRV1 Pseudouridine synthase n=3 Tax=Desulfobacteracea... 161 2e-38 UniRef50_C6VXU0 Pseudouridine synthase n=1 Tax=Dyadobacter ferme... 161 2e-38 UniRef50_Q11U12 Pseudouridine synthase n=1 Tax=Cytophaga hutchin... 159 1e-37 UniRef50_D2QMI8 RNA-binding S4 domain protein n=16 Tax=Bacteroid... 157 3e-37 UniRef50_C6JI84 Pseudouridine synthase n=2 Tax=Fusobacterium Rep... 154 4e-36 UniRef50_Q11YT0 Pseudouridine synthase n=9 Tax=Bacteroidetes Rep... 154 5e-36 UniRef50_C7NDY8 Pseudouridine synthase n=5 Tax=Fusobacteriaceae ... 151 3e-35 UniRef50_A4BW35 Pseudouridine synthase n=3 Tax=Flavobacteriaceae... 150 4e-35 UniRef50_C1N350 Predicted protein (Fragment) n=1 Tax=Micromonas ... 150 4e-35 UniRef50_C7M7R0 Pseudouridine synthase n=4 Tax=Bacteroidetes Rep... 148 2e-34 UniRef50_A8G0B7 Pseudouridine synthase n=19 Tax=Shewanella RepID... 148 2e-34 UniRef50_C3JBA6 Pseudouridine synthase n=2 Tax=Bacteria RepID=C3... 147 4e-34 UniRef50_A5TWE7 Pseudouridine synthase n=10 Tax=Fusobacterium Re... 147 6e-34 UniRef50_A1ZI67 Pseudouridine synthase n=1 Tax=Microscilla marin... 146 7e-34 UniRef50_D0MIA1 Pseudouridine synthase n=1 Tax=Rhodothermus mari... 146 7e-34 UniRef50_Q01SF5 Pseudouridine synthase n=3 Tax=Bacteria RepID=Q0... 146 7e-34 UniRef50_C6X4T2 Pseudouridine synthase n=2 Tax=Flavobacteriaceae... 145 2e-33 UniRef50_A4CJ52 Pseudouridine synthase n=5 Tax=cellular organism... 145 2e-33 UniRef50_D1C7P2 Pseudouridine synthase n=1 Tax=Sphaerobacter the... 144 4e-33 UniRef50_A8S8D3 Pseudouridine synthase n=1 Tax=Faecalibacterium ... 142 9e-33 UniRef50_D1CFA0 Pseudouridine synthase n=1 Tax=Thermobaculum ter... 142 1e-32 UniRef50_Q0C148 Ribosomal large subunit pseudouridine synthase F... 142 1e-32 UniRef50_B8G2X0 Pseudouridine synthase n=3 Tax=Bacteria RepID=B8... 142 2e-32 UniRef50_A4J3M3 Pseudouridine synthase n=167 Tax=Bacteria RepID=... 142 2e-32 UniRef50_Q7UUP0 Pseudouridine synthase n=1 Tax=Rhodopirellula ba... 141 2e-32 UniRef50_Q0AX41 Pseudouridine synthase n=1 Tax=Syntrophomonas wo... 141 2e-32 UniRef50_A5IXL5 Pseudouridine synthase n=3 Tax=Mycoplasma RepID=... 141 3e-32 UniRef50_C7ICF2 Pseudouridine synthase n=1 Tax=Clostridium papyr... 141 3e-32 UniRef50_A3CPQ5 Pseudouridine synthase n=3 Tax=Firmicutes RepID=... 140 4e-32 UniRef50_B4D966 Pseudouridine synthase n=1 Tax=Chthoniobacter fl... 140 4e-32 UniRef50_C0QWY7 Pseudouridine synthase n=2 Tax=Brachyspira RepID... 140 4e-32 UniRef50_B6W7S5 Pseudouridine synthase n=2 Tax=Anaerococcus RepI... 140 4e-32 UniRef50_C6Y027 Pseudouridine synthase n=1 Tax=Pedobacter hepari... 139 8e-32 UniRef50_B4U4Q4 Pseudouridine synthase n=15 Tax=Lactobacillales ... 139 1e-31 UniRef50_B2A4P2 Pseudouridine synthase n=2 Tax=Clostridia RepID=... 138 2e-31 UniRef50_Q4AAG8 Pseudouridine synthase n=6 Tax=Mycoplasma RepID=... 138 2e-31 UniRef50_B3QY10 Pseudouridine synthase n=10 Tax=Chlorobiaceae Re... 138 2e-31 UniRef50_B0N6F1 Pseudouridine synthase n=3 Tax=Bacteria RepID=B0... 138 3e-31 UniRef50_A5V220 Pseudouridine synthase n=5 Tax=Bacteria RepID=A5... 138 3e-31 UniRef50_C7LZX4 Pseudouridine synthase n=1 Tax=Acidimicrobium fe... 137 3e-31 UniRef50_C6XI22 RNA-binding S4 domain protein n=1 Tax=Hirschia b... 137 3e-31 UniRef50_C4XEA6 Pseudouridine synthase n=1 Tax=Mycoplasma fermen... 137 3e-31 UniRef50_D0J8G4 Pseudouridine synthase, Rsu n=96 Tax=Bacteria Re... 137 4e-31 UniRef50_C7H4Z6 Pseudouridine synthase n=1 Tax=Faecalibacterium ... 137 4e-31 UniRef50_C2MA52 Pseudouridine synthase n=1 Tax=Porphyromonas uen... 136 7e-31 UniRef50_UPI0001BC54DC ribosomal large subunit pseudouridine syn... 136 7e-31 UniRef50_B0S1L0 Pseudouridine synthase n=2 Tax=Finegoldia magna ... 136 7e-31 UniRef50_Q65HX7 Pseudouridine synthase n=5 Tax=Firmicutes RepID=... 136 9e-31 UniRef50_C8NZC3 Pseudouridine synthase n=1 Tax=Erysipelothrix rh... 136 1e-30 UniRef50_B0MSS4 Pseudouridine synthase n=1 Tax=Alistipes putredi... 135 1e-30 UniRef50_C7H5G4 Pseudouridine synthase n=8 Tax=Clostridiales Rep... 135 2e-30 UniRef50_B3U4L2 Pseudouridine synthase n=3 Tax=Bacteria RepID=B3... 134 3e-30 UniRef50_B2RK43 Pseudouridine synthase n=1 Tax=Porphyromonas gin... 134 4e-30 UniRef50_Q3B289 Pseudouridine synthase n=2 Tax=Chlorobium/Pelodi... 134 5e-30 UniRef50_B9KY92 Pseudouridine synthase n=1 Tax=Thermomicrobium r... 134 5e-30 UniRef50_P35159 Ribosomal large subunit pseudouridine synthase B... 133 8e-30 UniRef50_D0LG91 Pseudouridine synthase n=3 Tax=Bacteria RepID=D0... 133 9e-30 UniRef50_B5YJH7 Pseudouridine synthase n=1 Tax=Thermodesulfovibr... 132 1e-29 UniRef50_Q0BE12 Pseudouridine synthase, Rsu n=7 Tax=Burkholderia... 132 1e-29 UniRef50_D1PIW4 Pseudouridine synthase n=1 Tax=Subdoligranulum v... 131 2e-29 UniRef50_A5FK52 Ribosomal large subunit pseudouridine synthase B... 131 2e-29 UniRef50_B3E7C4 Pseudouridine synthase n=6 Tax=Desulfuromonadale... 131 3e-29 UniRef50_C7PP04 Pseudouridine synthase n=1 Tax=Chitinophaga pine... 131 3e-29 UniRef50_C1DTU8 Pseudouridine synthase n=5 Tax=Bacteria RepID=C1... 131 3e-29 UniRef50_A1S9T3 Pseudouridine synthase n=1 Tax=Shewanella amazon... 131 3e-29 UniRef50_A3HY40 Pseudouridine synthase n=1 Tax=Algoriphagus sp. ... 131 3e-29 UniRef50_Q2S2G3 Pseudouridine synthase n=1 Tax=Salinibacter rube... 130 4e-29 UniRef50_Q1J0B9 Pseudouridine synthase n=5 Tax=Deinococci RepID=... 130 4e-29 UniRef50_C6XB83 RNA-binding S4 domain protein n=2 Tax=Methylophi... 130 5e-29 UniRef50_C7RHU0 Pseudouridine synthase n=3 Tax=Anaerococcus RepI... 130 6e-29 UniRef50_Q3MC44 Pseudouridine synthase n=21 Tax=Cyanobacteria Re... 130 6e-29 UniRef50_B1ZYG8 Pseudouridine synthase n=3 Tax=Verrucomicrobia R... 130 7e-29 UniRef50_C0BLA3 Pseudouridine synthase n=1 Tax=Flavobacteria bac... 130 7e-29 UniRef50_B0B8U9 Pseudouridine synthase n=10 Tax=Chlamydiales Rep... 129 9e-29 UniRef50_A1K3P0 Pseudouridylate synthase n=3 Tax=Betaproteobacte... 129 1e-28 UniRef50_B1C6T1 Pseudouridine synthase n=2 Tax=Clostridiales Rep... 129 2e-28 UniRef50_C8PSZ6 Ribosomal large subunit pseudouridine synthase B... 128 2e-28 UniRef50_C8WXC0 Pseudouridine synthase n=3 Tax=Firmicutes RepID=... 128 2e-28 UniRef50_Q1MQ05 Pseudouridine synthase n=1 Tax=Lawsonia intracel... 128 2e-28 UniRef50_C6BUF1 RNA-binding S4 domain protein n=1 Tax=Desulfovib... 128 2e-28 UniRef50_UPI000196BAD7 hypothetical protein CATMIT_00510 n=1 Tax... 128 3e-28 UniRef50_UPI00016C3D27 ribosomal large subunit pseudouridine syn... 127 3e-28 UniRef50_Q688C2 Pseudouridine synthase n=1 Tax=Mycoplasma mobile... 127 6e-28 UniRef50_D0U645 Pseudouridine synthase n=1 Tax=uncultured actino... 126 8e-28 UniRef50_C7GZ55 Pseudouridine synthase n=1 Tax=Eubacterium saphe... 126 9e-28 UniRef50_A5IKF7 Pseudouridine synthase n=5 Tax=Thermotogaceae Re... 126 1e-27 UniRef50_A0K8E6 Pseudouridine synthase, Rsu n=38 Tax=Burkholderi... 125 1e-27 UniRef50_A0M7H0 Ribosomal large subunit pseudouridine synthase F... 125 1e-27 UniRef50_D1Y0J0 Pseudouridine synthase n=1 Tax=Prevotella bivia ... 125 1e-27 UniRef50_Q3AVD5 Pseudouridine synthase n=3 Tax=Cyanobacteria Rep... 124 3e-27 UniRef50_C9KIR7 Pseudouridine synthase n=1 Tax=Mitsuokella multa... 124 3e-27 UniRef50_Q6SI36 Pseudouridine synthase n=1 Tax=uncultured marine... 124 4e-27 UniRef50_A7HJ83 RNA-binding S4 domain protein n=3 Tax=Thermotoga... 124 4e-27 UniRef50_A6LIA0 Pseudouridine synthase n=23 Tax=Bacteroidales Re... 124 4e-27 UniRef50_C1SPF0 Pseudouridine synthase n=1 Tax=Denitrovibrio ace... 124 5e-27 UniRef50_C4XSY8 Pseudouridine synthase n=11 Tax=Desulfovibrional... 123 8e-27 UniRef50_A0L6G3 Pseudouridine synthase n=1 Tax=Magnetococcus sp.... 123 9e-27 UniRef50_Q7VBH8 Pseudouridine synthase n=1 Tax=Prochlorococcus m... 123 9e-27 UniRef50_D1N1S2 Pseudouridine synthase n=1 Tax=Victivallis vaden... 122 1e-26 UniRef50_C4ZJR2 Pseudouridine synthase n=2 Tax=Betaproteobacteri... 122 1e-26 UniRef50_UPI0001693918 pseudouridylate synthase n=1 Tax=Paenibac... 122 1e-26 UniRef50_A6ES27 Pseudouridylate synthase (Ribosomal large subuni... 122 2e-26 UniRef50_C1F236 Pseudouridine synthase n=8 Tax=Bacteria RepID=C1... 122 2e-26 UniRef50_C1XV14 Pseudouridine synthase n=2 Tax=Meiothermus RepID... 121 2e-26 UniRef50_O67444 Uncharacterized RNA pseudouridine synthase aq_14... 121 3e-26 UniRef50_D0MUX7 Ribosomal large subunit pseudouridine synthase F... 121 3e-26 UniRef50_Q04T62 Pseudouridine synthase n=4 Tax=Leptospira RepID=... 120 4e-26 UniRef50_B1X5I1 Pseudouridine synthase, Rsu n=1 Tax=Paulinella c... 120 5e-26 UniRef50_C9YDN9 Putative uncharacterized protein n=1 Tax=Curviba... 120 5e-26 UniRef50_Q1Q1Q0 Pseudouridine synthase n=1 Tax=Candidatus Kuenen... 120 5e-26 UniRef50_D1B9Q8 Pseudouridine synthase n=1 Tax=Thermanaerovibrio... 120 6e-26 UniRef50_C2KPR0 Pseudouridine synthase n=3 Tax=Mobiluncus RepID=... 120 7e-26 UniRef50_B8CBS5 Pseudouridylate synthase (Fragment) n=1 Tax=Thal... 120 7e-26 UniRef50_A6DF49 Pseudouridine synthase n=1 Tax=Lentisphaera aran... 120 8e-26 UniRef50_B9KC52 Pseudouridine synthase n=1 Tax=Thermotoga neapol... 119 9e-26 UniRef50_A9GX03 Pseudouridine synthase n=2 Tax=Bacteria RepID=A9... 119 1e-25 UniRef50_Q24V73 Pseudouridine synthase n=3 Tax=Bacteria RepID=Q2... 119 2e-25 UniRef50_Q1IJT7 Pseudouridine synthase n=1 Tax=Candidatus Koriba... 118 3e-25 UniRef50_C3X1E1 Pseudouridine synthase n=2 Tax=Oxalobacter formi... 117 5e-25 UniRef50_A6LLC7 RNA-binding S4 domain protein n=1 Tax=Thermosiph... 117 5e-25 UniRef50_A9NGL0 rRNA pseudouridylate synthase n=1 Tax=Acholeplas... 116 9e-25 UniRef50_Q0F269 Pseudouridine synthase n=1 Tax=Mariprofundus fer... 116 1e-24 UniRef50_C8NNL7 Pseudouridine synthase n=8 Tax=Corynebacterium R... 116 1e-24 UniRef50_A4J9G8 Pseudouridine synthase n=47 Tax=Bacteria RepID=A... 116 1e-24 UniRef50_D1R854 Pseudouridine synthase n=4 Tax=Chlamydiales RepI... 116 1e-24 UniRef50_C9RK28 Pseudouridine synthase n=1 Tax=Fibrobacter succi... 115 1e-24 UniRef50_Q26G32 Ribosomal large subunit pseudouridine synthase F... 115 1e-24 UniRef50_C7MNA2 Pseudouridine synthase n=1 Tax=Cryptobacterium c... 115 1e-24 UniRef50_A4QE19 Pseudouridine synthase n=13 Tax=Corynebacterinea... 115 1e-24 UniRef50_B0VG32 Pseudouridine synthase n=1 Tax=Candidatus Cloaca... 115 2e-24 UniRef50_A6G735 Pseudouridine synthase n=2 Tax=Bacteria RepID=A6... 115 2e-24 UniRef50_D0J9Y2 Pseudouridine synthase n=1 Tax=Blattabacterium s... 114 4e-24 UniRef50_A9KNY1 Pseudouridine synthase n=3 Tax=Firmicutes RepID=... 114 4e-24 UniRef50_B7FTM7 Predicted protein n=1 Tax=Phaeodactylum tricornu... 114 5e-24 UniRef50_Q31GA0 Pseudouridine synthase n=2 Tax=Gammaproteobacter... 114 5e-24 UniRef50_B0TFD8 Pseudouridine synthase n=18 Tax=Bacteria RepID=B... 113 9e-24 UniRef50_A5EVQ2 Pseudouridine synthase n=1 Tax=Dichelobacter nod... 113 1e-23 UniRef50_Q9HZ55 Ribosomal large subunit pseudouridine synthase B... 112 1e-23 UniRef50_Q8X4Q8 Ribosomal large subunit pseudouridine synthase B... 112 1e-23 UniRef50_Q73PC4 Pseudouridine synthase n=1 Tax=Treponema dentico... 112 1e-23 UniRef50_D2R7V9 Pseudouridine synthase n=1 Tax=Pirellula staleyi... 112 1e-23 UniRef50_C8QZD4 Pseudouridine synthase n=1 Tax=Desulfurivibrio a... 112 1e-23 UniRef50_B2UMD6 Pseudouridine synthase n=1 Tax=Akkermansia mucin... 112 2e-23 UniRef50_Q15Q67 Pseudouridine synthase n=2 Tax=Bacteria RepID=Q1... 112 2e-23 UniRef50_A6C4P7 Pseudouridine synthase n=1 Tax=Planctomyces mari... 112 2e-23 UniRef50_UPI0001745DB4 ribosomal large subunit pseudouridine syn... 111 3e-23 UniRef50_A7HC79 Pseudouridine synthase n=1 Tax=Anaeromyxobacter ... 110 4e-23 UniRef50_A3ESK0 Pseudouridine synthase n=4 Tax=Bacteria RepID=A3... 110 5e-23 UniRef50_A3JIZ1 Pseudouridine synthase n=1 Tax=Marinobacter sp. ... 110 5e-23 UniRef50_C2KV26 Pseudouridylate synthase n=1 Tax=Oribacterium si... 110 6e-23 UniRef50_UPI0001BCEF2E pseudouridine synthase n=1 Tax=Selenomona... 110 6e-23 UniRef50_Q3Z8C8 Pseudouridine synthase n=5 Tax=Dehalococcoides R... 110 7e-23 UniRef50_B1XJP9 Pseudouridine synthase n=3 Tax=Chroococcales Rep... 109 9e-23 UniRef50_Q6AR36 Related to pseudouridine synthase n=1 Tax=Desulf... 109 1e-22 UniRef50_Q140U9 Pseudouridine synthase n=80 Tax=Proteobacteria R... 109 1e-22 UniRef50_UPI0001C337CA ribosomal large subunit pseudouridine syn... 108 2e-22 UniRef50_A0JV58 Pseudouridine synthase n=37 Tax=Actinobacteridae... 108 2e-22 UniRef50_B6EJI1 Pseudouridine synthase n=8 Tax=Gammaproteobacter... 108 2e-22 UniRef50_A1K7C2 Pseudouridine synthase n=1 Tax=Azoarcus sp. BH72... 108 2e-22 UniRef50_C1FHS6 Predicted protein (Fragment) n=4 Tax=Mamiellales... 108 2e-22 UniRef50_Q6MIA3 Putative pseudouridylate synthase n=1 Tax=Bdello... 108 3e-22 UniRef50_Q1D5Q2 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q1... 108 3e-22 UniRef50_B9E1X9 Pseudouridine synthase n=39 Tax=Clostridium RepI... 108 3e-22 UniRef50_B9XS61 Pseudouridine synthase n=1 Tax=bacterium Ellin51... 107 4e-22 UniRef50_Q01Z61 Pseudouridine synthase n=1 Tax=Candidatus Soliba... 107 4e-22 UniRef50_A4RSB2 Predicted protein (Fragment) n=2 Tax=Ostreococcu... 107 5e-22 UniRef50_O32068 Uncharacterized RNA pseudouridine synthase ytzG ... 106 8e-22 UniRef50_A5WGV6 Pseudouridine synthase n=7 Tax=Moraxellaceae Rep... 105 1e-21 UniRef50_C6HYA4 Pseudouridine synthase n=1 Tax=Leptospirillum fe... 105 1e-21 UniRef50_A5CX60 Pseudouridine synthase n=1 Tax=Candidatus Vesico... 105 2e-21 UniRef50_B7G3Y8 Predicted protein (Fragment) n=1 Tax=Phaeodactyl... 105 2e-21 UniRef50_Q1J642 Pseudouridine synthase n=51 Tax=Streptococcus Re... 105 2e-21 UniRef50_B9ZS86 Pseudouridine synthase n=2 Tax=Chromatiales RepI... 105 2e-21 UniRef50_O05668 Uncharacterized RNA pseudouridine synthase ML137... 105 2e-21 UniRef50_Q2K4S3 Pseudouridine synthase n=10 Tax=Rhizobiaceae Rep... 105 2e-21 UniRef50_Q1D9N8 Pseudouridine synthase n=4 Tax=Cystobacterineae ... 105 2e-21 UniRef50_C5CXG1 Pseudouridine synthase n=4 Tax=Comamonadaceae Re... 105 3e-21 UniRef50_UPI0000D52F9C putative ribosomal large subunit pseudour... 104 3e-21 UniRef50_Q47QM5 Pseudouridine synthase n=3 Tax=Actinomycetales R... 104 3e-21 UniRef50_C5WHE9 Pseudouridine synthase n=3 Tax=Lactobacillales R... 104 3e-21 UniRef50_C2D7I2 Pseudouridine synthase n=1 Tax=Atopobium vaginae... 104 3e-21 UniRef50_C4FUC8 Pseudouridine synthase n=1 Tax=Catonella morbi A... 104 4e-21 UniRef50_B3PMD0 Pseudouridine synthase n=2 Tax=Mycoplasma RepID=... 104 4e-21 UniRef50_B3E104 Pseudouridine synthase n=1 Tax=Methylacidiphilum... 104 4e-21 UniRef50_A8SYF2 Pseudouridine synthase n=1 Tax=Coprococcus eutac... 104 4e-21 UniRef50_A3ZQL4 Pseudouridine synthase n=1 Tax=Blastopirellula m... 104 5e-21 UniRef50_Q12AB3 Pseudouridine synthase n=8 Tax=Proteobacteria Re... 103 5e-21 UniRef50_C0QV84 Pseudouridine synthase n=1 Tax=Brachyspira hyody... 103 6e-21 UniRef50_C7I043 Pseudouridine synthase n=4 Tax=Proteobacteria Re... 103 6e-21 UniRef50_C7NBL1 Pseudouridine synthase n=3 Tax=Leptotrichia RepI... 103 6e-21 UniRef50_C6AV89 Pseudouridine synthase n=17 Tax=Rhizobiaceae Rep... 103 7e-21 UniRef50_Q87NB7 Ribosomal large subunit pseudouridine synthase B... 103 8e-21 UniRef50_Q2NIZ3 Pseudouridine synthase n=5 Tax=Candidatus Phytop... 103 8e-21 UniRef50_A2RP35 Pseudouridine synthase n=172 Tax=Firmicutes RepI... 103 8e-21 UniRef50_A9ITY6 Pseudouridine synthase n=6 Tax=Betaproteobacteri... 103 8e-21 UniRef50_Q30U38 Pseudouridine synthase n=12 Tax=Epsilonproteobac... 103 8e-21 UniRef50_A0NV51 Pseudouridine synthase n=2 Tax=cellular organism... 102 1e-20 UniRef50_Q5F8V3 Pseudouridine synthase n=21 Tax=Proteobacteria R... 102 1e-20 UniRef50_B4RM91 Pseudouridine synthase n=8 Tax=Betaproteobacteri... 102 1e-20 UniRef50_C4V2S0 Pseudouridine synthase n=1 Tax=Selenomonas flueg... 102 2e-20 UniRef50_D2B9T7 Pseudouridine synthase n=18 Tax=Actinobacteria (... 102 2e-20 UniRef50_A5TW76 Pseudouridine synthase n=11 Tax=Fusobacterium Re... 102 2e-20 UniRef50_A1VDC0 Pseudouridine synthase n=3 Tax=Desulfovibrio vul... 102 2e-20 UniRef50_C0EB54 Pseudouridine synthase n=1 Tax=Clostridium methy... 101 2e-20 UniRef50_A6DMJ6 Pseudouridine synthase n=1 Tax=Lentisphaera aran... 101 2e-20 UniRef50_P45104 Ribosomal large subunit pseudouridine synthase B... 101 3e-20 UniRef50_Q6G8H4 Pseudouridine synthase n=61 Tax=Firmicutes RepID... 101 3e-20 UniRef50_UPI0001C37AA4 16s pseudouridylate synthase n=2 Tax=Rumi... 101 3e-20 UniRef50_C1QDI4 Pseudouridine synthase n=1 Tax=Brachyspira murdo... 101 3e-20 UniRef50_Q1RJR2 Uncharacterized RNA pseudouridine synthase RBE_0... 101 4e-20 UniRef50_A9AXM1 Pseudouridine synthase n=3 Tax=Bacteria RepID=A9... 100 4e-20 UniRef50_C9LMR9 Pseudouridine synthase n=1 Tax=Dialister invisus... 100 5e-20 UniRef50_B8DUD9 Pseudouridine synthase n=8 Tax=Bifidobacterium R... 100 5e-20 UniRef50_B0RHF4 Pseudouridine synthase n=3 Tax=Actinobacteria (c... 100 5e-20 UniRef50_C1FD45 Pseudouridylate synthase n=1 Tax=Micromonas sp. ... 100 7e-20 UniRef50_C1DA59 Pseudouridine synthase n=6 Tax=Betaproteobacteri... 100 8e-20 UniRef50_Q04F57 Pseudouridine synthase n=2 Tax=Oenococcus oeni R... 100 8e-20 UniRef50_B1ZYI5 Pseudouridine synthase n=2 Tax=Bacteria RepID=B1... 100 8e-20 UniRef50_B2UKZ1 Pseudouridine synthase n=1 Tax=Akkermansia mucin... 100 8e-20 UniRef50_Q9ZJG0 Uncharacterized RNA pseudouridine synthase jhp_1... 100 1e-19 UniRef50_B2HUK5 Pseudouridine synthase n=9 Tax=Gammaproteobacter... 100 1e-19 UniRef50_C0W3E8 Pseudouridine synthase n=1 Tax=Actinomyces uroge... 99 1e-19 UniRef50_B3DRY9 Pseudouridine synthase n=7 Tax=Bifidobacterium R... 99 1e-19 UniRef50_C0FY58 Pseudouridine synthase n=3 Tax=Clostridiales Rep... 99 1e-19 UniRef50_C1A8K5 Pseudouridine synthase n=1 Tax=Gemmatimonas aura... 99 1e-19 UniRef50_C9M8T9 RNA pseudouridine synthase n=2 Tax=Synergistacea... 99 1e-19 UniRef50_Q55578 Uncharacterized RNA pseudouridine synthase slr03... 99 2e-19 UniRef50_B9HLH3 Predicted protein n=5 Tax=Magnoliophyta RepID=B9... 99 2e-19 >UniRef50_Q83IR6 Ribosomal large subunit pseudouridine synthase F n=90 Tax=Bacteria RepID=RLUF_SHIFL Length = 290 Score = 581 bits (1498), Expect = e-165, Method: Compositional matrix adjust. Identities = 286/290 (98%), Positives = 288/290 (99%) Query: 1 MLPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIE 60 MLPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGD+VKVNGQLIE Sbjct: 1 MLPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDIVKVNGQLIE 60 Query: 61 PREAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHG 120 PREAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHG Sbjct: 61 PREAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHG 120 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRIT 180 DLVNKILRAGNDHEKEYLVTVDKPIT+EFIRGM AGVPILGTVTKKCKVKKEAPFVFRIT Sbjct: 121 DLVNKILRAGNDHEKEYLVTVDKPITDEFIRGMGAGVPILGTVTKKCKVKKEAPFVFRIT 180 Query: 181 LVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSS 240 LVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSS Sbjct: 181 LVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSS 240 Query: 241 SEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKGR 290 SE KPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKGR Sbjct: 241 SEAKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKGR 290 >UniRef50_Q8Z1V3 Ribosomal large subunit pseudouridine synthase F n=235 Tax=Bacteria RepID=RLUF_SALTI Length = 289 Score = 496 bits (1277), Expect = e-139, Method: Compositional matrix adjust. Identities = 266/290 (91%), Positives = 277/290 (95%), Gaps = 1/290 (0%) Query: 1 MLPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIE 60 ML D+S RLNKYISESGICSRREADR+IEQGNVF+NGKRA IGDQV GDVVKVNG+LIE Sbjct: 1 MLTDTSTRLNKYISESGICSRREADRFIEQGNVFINGKRAAIGDQVVAGDVVKVNGRLIE 60 Query: 61 PREAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHG 120 PREA+DLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKR+FPIGRLDKDSQGLIFLTNHG Sbjct: 61 PREADDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRIFPIGRLDKDSQGLIFLTNHG 120 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRIT 180 DLVNKILRAGNDHEKEYLVTVDKPIT+EFIRGM AGVPILGTVTKKCKVKKEAPFVFRIT Sbjct: 121 DLVNKILRAGNDHEKEYLVTVDKPITDEFIRGMGAGVPILGTVTKKCKVKKEAPFVFRIT 180 Query: 181 LVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSS 240 LVQGLNRQIRRMCE+FGYEV KLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIE SS Sbjct: 181 LVQGLNRQIRRMCEYFGYEVTKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIEGSS 240 Query: 241 SEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKGR 290 SE KPKAKAKPKTAGIKRPVV +EK+ EK RPAS+GKRFTSPGRKKKGR Sbjct: 241 SEAKPKAKAKPKTAGIKRPVVAIEKSNEK-ARPASSGKRFTSPGRKKKGR 289 >UniRef50_Q7MMX9 Pseudouridine synthase n=43 Tax=Vibrionaceae RepID=Q7MMX9_VIBVY Length = 347 Score = 305 bits (780), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 153/239 (64%), Positives = 178/239 (74%), Gaps = 2/239 (0%) Query: 1 MLPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIE 60 M D++ RLNKYISE+G CSRREAD+ IEQG V +NGK+ +G +V PGD V V+G+ + Sbjct: 1 MSQDNAKRLNKYISETGFCSRREADKLIEQGRVTINGKQPEMGTKVLPGDDVCVDGKPVA 60 Query: 61 PREAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHG 120 +E V IALNKP GI TTE NIVDF+ H KR+FPIGRLDK S GLIFLTN G Sbjct: 61 AKEKP--VYIALNKPTGITCTTERNIPGNIVDFIGHKKRIFPIGRLDKPSDGLIFLTNDG 118 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRIT 180 D+VNKILRAGN HEKEY+V VDKPIT EFI+ MS+GV IL TVT CKV +E F FRI Sbjct: 119 DIVNKILRAGNHHEKEYVVRVDKPITPEFIKAMSSGVNILDTVTLPCKVTQETKFSFRIV 178 Query: 181 LVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENS 239 L QGLNRQIRRMCE GYEV KL R RIMN+SL GIP G+WR LTDDE+ ++ + E S Sbjct: 179 LTQGLNRQIRRMCEALGYEVFKLRRVRIMNISLDGIPNGKWRYLTDDEVTEILAMCEGS 237 >UniRef50_C7PFL3 Pseudouridine synthase n=3 Tax=Bacteria RepID=C7PFL3_CHIPD Length = 389 Score = 288 bits (737), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 151/290 (52%), Positives = 197/290 (67%), Gaps = 10/290 (3%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPRE 63 D S+ LNK+IS++G CSRREAD I G V LN + A +G++ KPGD V+V+G LI + Sbjct: 2 DQSISLNKFISDTGYCSRREADNLITSGRVLLNDRPAALGNRYKPGDTVEVDGSLITAAK 61 Query: 64 AEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLV 123 E V +ALNKP GI +TTE +DNI+ FVN+ +R+FPIGRLDKDS+GLIFLTN GD++ Sbjct: 62 KEKRVYLALNKPPGITTTTELHIKDNIISFVNYPQRIFPIGRLDKDSEGLIFLTNDGDII 121 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQ 183 NKILRA N+HEKEY+V V+KPI F+ MS GVPIL T T CKV+ FRITL Q Sbjct: 122 NKILRAANNHEKEYVVRVNKPIDTNFLHQMSQGVPILDTRTLPCKVQMTGRQTFRITLTQ 181 Query: 184 GLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENS---S 240 GLNRQIRRMCE+ GY V L+R RIMNV L +PLG+WR L++ E+ + + + +S S Sbjct: 182 GLNRQIRRMCEYLGYTVVGLQRVRIMNVRLDKLPLGKWRYLSEAEIAFIKESVADSTKVS 241 Query: 241 SEVKPKAKAKPKTAGIKRPVVKMEKT---AEKGGRPASNGKRFTSPGRKK 287 E KP A+ KTA +PV + E + +PA+ KR +P + + Sbjct: 242 GESKPSG-ARRKTA---KPVEEKEHLRTGSTPKNKPATGHKRVAAPAKHR 287 >UniRef50_A9KPL1 Pseudouridine synthase n=63 Tax=Bacteria RepID=A9KPL1_CLOPH Length = 477 Score = 281 bits (719), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 143/240 (59%), Positives = 183/240 (76%), Gaps = 2/240 (0%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPRE 63 + +VR+NKY+SESGICSRREAD I +G V ++G+ A +G +V PG V V G+ RE Sbjct: 16 EKAVRINKYLSESGICSRREADTRIAKGEVTIDGEVAVMGSKVLPGQKV-VLGKKEVSRE 74 Query: 64 AEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLV 123 E +VLIA +KP GIV TTE E DNI+D++ +S+R++PIGRLDKDS+GLIFLTN+GD+V Sbjct: 75 -EKMVLIAFHKPKGIVCTTEKREPDNIIDYIKYSQRIYPIGRLDKDSEGLIFLTNNGDIV 133 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQ 183 NKILRAGN HEKEY+VTV+KPIT F++GM+ GVPIL TVTK C ++ FRI L Q Sbjct: 134 NKILRAGNHHEKEYIVTVNKPITAAFLKGMAGGVPILDTVTKPCTLEAIDKVTFRIILTQ 193 Query: 184 GLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSSSEV 243 GLNRQIRRMCEHF Y+V KL R RIMNV+L + +G +R+LTD EL + + IE S++E Sbjct: 194 GLNRQIRRMCEHFDYKVTKLVRIRIMNVNLGRLKVGGYRNLTDKELEGIKEQIELSNNEA 253 >UniRef50_A6EPE0 Pseudouridine synthase n=1 Tax=unidentified eubacterium SCB49 RepID=A6EPE0_9BACT Length = 291 Score = 279 bits (713), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 144/260 (55%), Positives = 182/260 (70%), Gaps = 8/260 (3%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREA 64 +S RLNK IS+SG CSRR+AD+ IE+G V LNG ++GD+ P DV+ V G LI E Sbjct: 6 NSTRLNKAISDSGYCSRRQADKLIEEGKVTLNGNPVSLGDRAMPDDVIHVEGNLIT--EN 63 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVN 124 +LV I LNKPVGI TT+ N+VD+++H +R+F +GRLDK S+GL+ +TN GD+VN Sbjct: 64 NNLVYIILNKPVGITCTTDLRVEGNVVDYIDHKERIFHVGRLDKPSEGLLLMTNDGDIVN 123 Query: 125 KILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI--LGTVTKKCKVKKEAPFVFRITLV 182 KILRAGN HEKEY V VD+PIT EFIR M G+P+ L T TKKC V++ + FVFRI LV Sbjct: 124 KILRAGNSHEKEYFVKVDRPITTEFIRRMGNGIPLEELETTTKKCFVEQVSRFVFRIILV 183 Query: 183 QGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSSSE 242 QGLNRQIRRMCE+ YEV +L+R RIMN+ L +P GEWRDLT +EL L + S ++ Sbjct: 184 QGLNRQIRRMCEYLDYEVMELKRERIMNIELGDLPYGEWRDLTKEELQGLKDAVAKSEND 243 Query: 243 V----KPKAKAKPKTAGIKR 258 + K KA PKT R Sbjct: 244 SFIDREEKRKAAPKTGDANR 263 >UniRef50_Q3IC94 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q3IC94_PSEHT Length = 327 Score = 271 bits (693), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 143/266 (53%), Positives = 180/266 (67%), Gaps = 17/266 (6%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAEDL 67 RLNK+IS++G CSRREAD+YIE G V +NG R +G +V DVV V+G+ + + Sbjct: 6 RLNKFISDTGFCSRREADKYIEDGRVTVNGIRPEMGVKVSSTDVVLVDGKTL--KAIPKR 63 Query: 68 VLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNKIL 127 V IA NKPVGI TTE + NIV VN+ R+FPIGRLD+ S+GLIFLTN GD+VNKIL Sbjct: 64 VYIAYNKPVGITCTTERKIQSNIVKAVNYPDRIFPIGRLDRPSEGLIFLTNEGDIVNKIL 123 Query: 128 RAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQGLNR 187 RAGN+HEKEY+VTVDKP+ +F+ M GVPIL T+TKKCKV + F I L QGLNR Sbjct: 124 RAGNNHEKEYVVTVDKPLNRQFVAKMGNGVPILDTITKKCKVTQTGAQQFTIILTQGLNR 183 Query: 188 QIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIE---------- 237 QIRRMCE+ GYEV L+R RIMNV+L G+ +G+WR LT+ E+ + I Sbjct: 184 QIRRMCEYLGYEVVTLKRVRIMNVTLKGLKVGQWRHLTEQEMAIINNSISDSGKTQEHSV 243 Query: 238 ----NSSSEVKPKAKAKP-KTAGIKR 258 N+ + P+A AKP KT+ KR Sbjct: 244 YDEANALQQQSPQAVAKPQKTSDKKR 269 >UniRef50_C9L6I1 Pseudouridine synthase n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L6I1_RUMHA Length = 271 Score = 267 bits (683), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 133/282 (47%), Positives = 190/282 (67%), Gaps = 21/282 (7%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAED 66 +RLNKY+S++G+CSRREADR IE+ V ++GK A G QV+ +KV+G+ I+ E + Sbjct: 1 MRLNKYLSDAGVCSRREADRLIEEKRVLVDGKPAVQGMQVEDFQEIKVDGKAIKREEKK- 59 Query: 67 LVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNKI 126 VL+ +KP GI T + N++ ++N+ RV+ GRLDKDS+GL+ LTN G+LVN+I Sbjct: 60 -VLLVFHKPKGIECTANPNVKKNVISYINYPIRVYYAGRLDKDSEGLLLLTNQGELVNQI 118 Query: 127 LRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQGLN 186 ++AG+ HEKEYLVTVDKP+TEEF++ M GVP+LGT+T+KCKV+KE+ VFRITL QGLN Sbjct: 119 MKAGSYHEKEYLVTVDKPVTEEFLQSMREGVPVLGTITRKCKVEKESEKVFRITLTQGLN 178 Query: 187 RQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSSSEVKPK 246 RQIRRMC + GYEV KL+R RIMN+ L +P+G +R+ T +EL +L + I + + Sbjct: 179 RQIRRMCNYLGYEVVKLKRIRIMNIELGNLPIGSYREATKEELDELKRQISEKAEK---- 234 Query: 247 AKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKK 288 + E KG +P N ++ +P + +K Sbjct: 235 ---------------RQETDFHKGKKPVKNAGKYRNPSKVRK 261 >UniRef50_C6J9Y4 Pseudouridine synthase n=2 Tax=Clostridiales RepID=C6J9Y4_9FIRM Length = 323 Score = 263 bits (671), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 130/241 (53%), Positives = 174/241 (72%), Gaps = 3/241 (1%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPRE 63 D +R+NKY+SE+GICSRREADR IE+G + +NGK+A G +V D + + I + Sbjct: 11 DEKIRINKYLSEAGICSRREADRMIEEGRITVNGKKAESGQKVSLEDEICADN--IPVHK 68 Query: 64 AEDLVLIALNKPVGIV-STTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDL 122 E VL+ NKP GIV ST + + + D++++ RV+P+GRLDK+SQGL+ LTN GDL Sbjct: 69 NEKKVLLLFNKPRGIVCSTKQQFDETTVTDYLDYPLRVYPVGRLDKESQGLLLLTNEGDL 128 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLV 182 VNKI+RAGN HEKEY VTV+KP+ EF+R MS GVP+L TVT+ C+V + FRI L Sbjct: 129 VNKIMRAGNYHEKEYFVTVNKPVDREFVRRMSKGVPVLDTVTRPCRVVQTGECSFRIILT 188 Query: 183 QGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSSSE 242 QGLNRQIRRMC + GYEV+KL+R RIMN++L GI GE+R++T E +L L+E+S+SE Sbjct: 189 QGLNRQIRRMCRYLGYEVQKLKRIRIMNLTLDGIREGEYREITAQEWEELNHLLESSTSE 248 Query: 243 V 243 Sbjct: 249 T 249 >UniRef50_Q21MN5 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q21MN5_SACD2 Length = 324 Score = 258 bits (660), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 143/282 (50%), Positives = 182/282 (64%), Gaps = 9/282 (3%) Query: 1 MLPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIE 60 M DS+VRLNK+IS+SG CSRREAD+ I V +NG +G V+ GDVV V+ Q + Sbjct: 1 MTFDSAVRLNKFISDSGHCSRREADKLIASDRVKINGLLPELGAVVESGDVVTVDDQPLR 60 Query: 61 PREAE--DLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTN 118 A+ D + IA NKP GI TT+ + NIVD ++H +R+FPIGRLDK S+GLI LT+ Sbjct: 61 ASAADKTDRIYIAYNKPFGITCTTDQTVKGNIVDAIDHDERIFPIGRLDKPSEGLILLTS 120 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFR 178 GD+VNKILRA N H+KEY+VTV+K + F MS G+PILGT+TK CKV+ F+ Sbjct: 121 DGDIVNKILRAENAHDKEYIVTVNKNLAPNFAEKMSRGLPILGTITKPCKVRVIGKTTFK 180 Query: 179 ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIEN 238 I L QGLNRQIRRMC++ GY+VK+L RTRIMN+ L + G+WR LT EL L K Sbjct: 181 IILTQGLNRQIRRMCDYLGYDVKQLVRTRIMNIELGKLKPGQWRRLTKVELDLLTKATSQ 240 Query: 239 SSSEVKPKAKAKPKTAG------IKRPVVKME-KTAEKGGRP 273 SS A AK + + +P VK E K +K GRP Sbjct: 241 SSKTAIKGANAKSSASPTATKPRVAKPKVKKEPKDLDKHGRP 282 >UniRef50_A5ZYR1 Pseudouridine synthase n=2 Tax=Clostridiales RepID=A5ZYR1_9FIRM Length = 315 Score = 244 bits (623), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 126/241 (52%), Positives = 170/241 (70%), Gaps = 5/241 (2%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREA 64 +++R+NKY+S +G+CSRREAD+ + G V + GK G+++ V ++G+ P +A Sbjct: 11 TTIRINKYLSAAGVCSRREADQLTDAGRVTVAGKEIGTGERIPADAEVFLDGR---PVKA 67 Query: 65 ED-LVLIALNKPVGIVSTTEDGERDNIV-DFVNHSKRVFPIGRLDKDSQGLIFLTNHGDL 122 E VL+ KP GIV +T+ ++ V +F+++ RV+P+GRLDKDS+GL+ LTN GDL Sbjct: 68 ETRQVLLLFYKPRGIVCSTKKQRQETTVTEFLDYPVRVYPVGRLDKDSEGLLLLTNQGDL 127 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLV 182 VN+I+RAGN HEKEY VTVDK ITE FIR MS+GVPILGTVT+ C V K F I L Sbjct: 128 VNRIMRAGNYHEKEYEVTVDKKITETFIRKMSSGVPILGTVTRPCTVYKTGDKSFSIILT 187 Query: 183 QGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSSSE 242 QGLNRQIRRMCE+ GY V L+R RIMN++L G+ GE+R++ DE L +LI +SSSE Sbjct: 188 QGLNRQIRRMCEYLGYHVCTLKRIRIMNLTLDGLKCGEYREICGDEWKKLNELIRDSSSE 247 Query: 243 V 243 Sbjct: 248 T 248 >UniRef50_C5EVC9 Pseudouridine synthase n=6 Tax=Clostridiales RepID=C5EVC9_9FIRM Length = 294 Score = 238 bits (607), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 124/254 (48%), Positives = 174/254 (68%), Gaps = 8/254 (3%) Query: 9 LNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPG-----DVVKVNGQLIEPRE 63 LNK++S+ G+CSRREADR IE G V+++G A +G +VKPG D V VNG Sbjct: 36 LNKWLSQMGVCSRREADRLIEAGKVWVDGSPAAMGQKVKPGQKVVCDGVPVNGGSGADSR 95 Query: 64 AEDLVLIALNKPVGIVSTTEDGERD-NIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDL 122 VL+ +NKP GIV TT D +R NIV+++++ +R++P+GRLDKDS+GL+ +TN GDL Sbjct: 96 KPKPVLLVVNKPRGIVCTTSDKDRAMNIVEYLDYPERIYPVGRLDKDSEGLLLMTNQGDL 155 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI--LGTVTKKCKVKKEAPFVFRIT 180 VNKI+R+GN HEKEY+VTVD+P+T++ + M+ G+ + L TVT+ CKVK+ F I Sbjct: 156 VNKIMRSGNAHEKEYIVTVDRPLTDDAMDRMAKGIYLRELETVTRPCKVKRVDGKTFSII 215 Query: 181 LVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSS 240 L QGLNRQIRRMCE G V++L R RIMN+ L G+ G R++ +E +L +L+ +SS Sbjct: 216 LTQGLNRQIRRMCEACGCHVERLVRVRIMNIRLDGLETGASREVGQEEYRELMRLLRDSS 275 Query: 241 SEVKPKAKAKPKTA 254 S + +A P A Sbjct: 276 SLPGGRGRAVPHKA 289 >UniRef50_C8P160 Pseudouridine synthase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P160_ERYRH Length = 262 Score = 230 bits (587), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 124/239 (51%), Positives = 160/239 (66%), Gaps = 8/239 (3%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAE 65 S+RLNKYIS+SG CSRR+ADR+I +G V ++G AT+G QV PG V V G + + + Sbjct: 25 SLRLNKYISDSGYCSRRQADRFIAEGVVAIDGVTATVGQQVLPGQRVTVEGNHVTIDDEK 84 Query: 66 DLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNK 125 V IALNKP GI TT+ NI DF+N+ K +FPIGRLDKDS GLI LTN GD+VNK Sbjct: 85 --VYIALNKPRGITCTTDGAIEGNISDFMNYPKMIFPIGRLDKDSSGLILLTNDGDIVNK 142 Query: 126 ILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILG------TVTKKCKVKKEAPFVFRI 179 ILR H+KEY+V+V+K I E+FI MS GV I VT V++ AP FRI Sbjct: 143 ILREEYGHDKEYIVSVNKTIDEDFITKMSKGVEIYNQQTHRMQVTNPSDVEQVAPKTFRI 202 Query: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIEN 238 L QGLNRQIRRM + G++V L R RIMN++L + +GEWR L+ EL ++ + I++ Sbjct: 203 VLNQGLNRQIRRMTKALGFKVTTLNRVRIMNINLGDLKVGEWRYLSVHELEEMNRRIQS 261 >UniRef50_A0PYR9 Pseudouridine synthase n=9 Tax=Clostridium RepID=A0PYR9_CLONN Length = 229 Score = 221 bits (564), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 112/223 (50%), Positives = 150/223 (67%), Gaps = 3/223 (1%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAED 66 +R+NK +S GICSR+EA+R IEQ + +NGK G V+ D + ++ + I+P++ Sbjct: 1 MRINKLLSNYGICSRKEANRIIEQNRIIVNGKLCIPGQWVEESDEILLDNKRIKPKKK-- 58 Query: 67 LVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNKI 126 V I LNKPVGI T+ + NI+DFVN+ +FP+GRLDK S+GLI LTN G+L NKI Sbjct: 59 -VYILLNKPVGITCTSSKDIKANIIDFVNYRDYIFPVGRLDKKSEGLIILTNDGELSNKI 117 Query: 127 LRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQGLN 186 L + N HEKEY+V VDKP +EFI MS GV + G T+ C V++ F+I L QGLN Sbjct: 118 LESENMHEKEYVVKVDKPFDDEFIENMSKGVQLKGVKTRTCIVRRIDECTFKIILTQGLN 177 Query: 187 RQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDEL 229 RQIR+M FGY V KL+R RIMN+ + GI +G +R T+DEL Sbjct: 178 RQIRKMTRAFGYTVVKLKRIRIMNLKIDGIDIGSFRHFTEDEL 220 >UniRef50_A9NFY3 Pseudouridine synthase n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NFY3_ACHLI Length = 236 Score = 218 bits (555), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 112/232 (48%), Positives = 153/232 (65%), Gaps = 8/232 (3%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAED 66 +RLN YIS++G+ SRR AD IE G + +NG A +G Q+ DVV ++ +IEP E + Sbjct: 1 MRLNLYISKTGVASRRGADSLIEHGRIKVNGVTAVLGMQITKNDVVTLDNNIIEPLEEKF 60 Query: 67 LVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNKI 126 +L LNKPVGIVSTT N++ F+N +++FP+GRLDKDS GLI LTN G +VNKI Sbjct: 61 YIL--LNKPVGIVSTTNTAISGNMITFMNFKEKIFPVGRLDKDSHGLILLTNDGSIVNKI 118 Query: 127 LRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPF------VFRIT 180 LR N H+KEY VT++KP + FI M++GV I V + ++ + F +T Sbjct: 119 LRVENGHDKEYHVTLNKPYDDYFIETMTSGVEIYNPVAHEKQMTMPSILKPLDERTFSLT 178 Query: 181 LVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDL 232 + QGLNRQIRRM + GY V+ LER RIM+++L +P+G WR LT DEL +L Sbjct: 179 IRQGLNRQIRRMADSLGYRVESLERVRIMHLTLGDLPVGYWRYLTSDELKEL 230 >UniRef50_C0D9T3 Pseudouridine synthase n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D9T3_9CLOT Length = 300 Score = 207 bits (528), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 115/274 (41%), Positives = 158/274 (57%), Gaps = 40/274 (14%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLI-------- 59 RLNK +S G+CSRREADR IE G V ++G A +G +V+ V G+++ Sbjct: 5 RLNKLLSAMGVCSRREADRLIESGKVLVDGVPAKMGQKVRMDQTVVCRGKVVGRGEAAAG 64 Query: 60 ---------------EPREAEDL--------------VLIALNKPVGIVSTTEDGERD-N 89 + A+D VL+A+NKP G+V T D ++ N Sbjct: 65 AGNGKTARRVGSGRADGTAAQDARPASLPRSMKKPRPVLLAVNKPKGVVCTASDKDKAPN 124 Query: 90 IVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEF 149 IVD + + RV+ +GRLDKDS+GL+ +TN GDLVNKI+R+GN HEKEY V VD+P+T EF Sbjct: 125 IVDMIQYPVRVYYVGRLDKDSEGLVLMTNQGDLVNKIMRSGNAHEKEYQVVVDRPVTAEF 184 Query: 150 IRGMSAGVPI--LGTVTKKCKVKKEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTR 207 + M GV + L T CKV+K F I L QGLNRQIRRMCE G V+ L+R R Sbjct: 185 LARMEKGVRLKELDRTTLPCKVRKTGDKRFSIVLTQGLNRQIRRMCEACGCHVRSLKRVR 244 Query: 208 IMNVSLSGIPLGEWRDLTDDELIDLFKLIENSSS 241 +MN+ L + GE+R + E + KL+E+S++ Sbjct: 245 VMNICLGDLKSGEYRQVEGAEYREFMKLLEHSTN 278 >UniRef50_C3BQR1 Pseudouridine synthase n=3 Tax=Bacillus RepID=C3BQR1_9BACI Length = 203 Score = 205 bits (521), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 102/200 (51%), Positives = 136/200 (68%), Gaps = 1/200 (0%) Query: 35 LNGKRATIGDQVKPGDVVKVNGQLIEPREAEDLVLIALNKPVGIVSTTEDGERDNIVDFV 94 +NG+ G V D+V ++G+ IE +E ++ + IA +KPVGI T D NI++++ Sbjct: 3 INGEVCKHGTIVTENDIVMIDGKTIE-KEDKEKIYIAFHKPVGITCTAADHIDGNIIEYI 61 Query: 95 NHSKRVFPIGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMS 154 NH +R+FP+GRLDK S+GLI LTN G + N+IL +HEKEY+VTVDKP T+ FI GMS Sbjct: 62 NHPERIFPVGRLDKASEGLILLTNDGRIANQILHGDYEHEKEYIVTVDKPFTDWFIDGMS 121 Query: 155 AGVPILGTVTKKCKVKKEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS 214 GV I +TK+CKV + FRI L QG+NRQIRRM FGY V KL+R RIMN+ L Sbjct: 122 RGVKIKDGITKQCKVTRVNSSTFRIILTQGMNRQIRRMSRAFGYTVTKLKRVRIMNIKLD 181 Query: 215 GIPLGEWRDLTDDELIDLFK 234 G+ GEWR++T EL +L K Sbjct: 182 GLEAGEWRNVTVQELQELLK 201 >UniRef50_Q31H34 Pseudouridine synthase n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31H34_THICR Length = 261 Score = 199 bits (506), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 102/232 (43%), Positives = 150/232 (64%), Gaps = 2/232 (0%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREA 64 SS+RLNK IS++G+ S+++AD +I Q V +NG+ A++G +V D V ++G+ + + Sbjct: 30 SSMRLNKLISQAGLGSKKQADAWIMQNRVTVNGQVASVGQKVNQHDQVLLDGRPVA--WS 87 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVN 124 +++L+A +KPVG+V T + +N+V + +GRLDK S+GL+ LTN GDL N Sbjct: 88 SEVLLMAYHKPVGVVCTHDLSVANNLVVSTGLMQHFSAMGRLDKASEGLMILTNQGDLTN 147 Query: 125 KILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQG 184 IL+ G HEKEY V VD+P+TE F+ M GV I+G VT+ C+++ FRI L QG Sbjct: 148 HILQPGFAHEKEYWVEVDQPLTEYFLTNMQQGVEIMGQVTRPCEIEATGEHCFRIVLTQG 207 Query: 185 LNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLI 236 LN+QIRRMC+ GY V +L+R RI V L +P+ R+L D E L +LI Sbjct: 208 LNKQIRRMCKSLGYRVLRLQRVRIAQVWLDDLPVNTLRELNDVEKSGLQRLI 259 >UniRef50_UPI0001BC345F ribosomal large subunit pseudouridine synthase F n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=UPI0001BC345F Length = 240 Score = 189 bits (480), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 101/237 (42%), Positives = 146/237 (61%), Gaps = 8/237 (3%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAED 66 +R+NKYIS+SG+CSRR AD+ I +G+V +NG A G +V + V +D Sbjct: 4 IRINKYISKSGVCSRRAADKLINEGHVTINGVVAETGSKVT--EKDIVRIDDDIINLIKD 61 Query: 67 LVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNKI 126 + + A KPVG +S+ D + I F+ +FP+GRLDKDS+GL+ +TN G+L+N+I Sbjct: 62 IKVYAFYKPVGYISSLSDEQGTGIASFLPQGMGLFPVGRLDKDSEGLMLITNDGNLMNEI 121 Query: 127 LRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKK------CKVKKEAPFVFRIT 180 L A N HEKEY+VT + +F+ M+ GVPI T K CK + F+IT Sbjct: 122 LNASNGHEKEYIVTTRQKFNNDFLVKMAKGVPITNRATGKKIITAPCKTEALEDNSFKIT 181 Query: 181 LVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIE 237 ++QGLNRQIRRMC +F +V L+R RIMN+ L + GE ++L+ ELI L +++E Sbjct: 182 IIQGLNRQIRRMCGYFDIDVVSLKRVRIMNIMLGNMRPGELKELSQSELIKLRRMLE 238 >UniRef50_A6LUE3 Pseudouridine synthase n=3 Tax=Clostridium RepID=A6LUE3_CLOB8 Length = 281 Score = 177 bits (450), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 105/278 (37%), Positives = 148/278 (53%), Gaps = 55/278 (19%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAED 66 +R+NK S GICSR+E +R IE+ + +NG+ G V D + +G+ I E Sbjct: 1 MRINKLFSNYGICSRKETNRLIEEKRIIINGRYCVEGQWVNDSDEIIFDGKPISTVEK-- 58 Query: 67 LVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNKI 126 V I LNKPVGI T E+ DNI+ ++ + +FP+GRLDKDSQGLI +TN G++ N+I Sbjct: 59 -VYIVLNKPVGITCTAENKVSDNIISYMKYPHYIFPVGRLDKDSQGLILMTNDGEVANRI 117 Query: 127 LRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVT------------------KKCK 168 L + N HEKEYLV V+K +EF++ MS GV I G + K+ Sbjct: 118 LESDNMHEKEYLVQVNKNFDDEFLKRMSNGVEITGNKSSGVRRISDKLGLYKKIEDKEIL 177 Query: 169 VKKEAP--------------------FV--------------FRITLVQGLNRQIRRMCE 194 + +E P FV F+I L QG+N+QIR+M Sbjct: 178 LGEEDPGDSSIVQLKELKNIEREQNKFVKTRPCQVERVDDNTFKIILTQGMNKQIRKMSG 237 Query: 195 HFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDL 232 GY+V KLER RIMN+ L+ + G+WR L ++E+ L Sbjct: 238 ALGYKVIKLERIRIMNIKLNDLETGKWRYLEENEMKSL 275 >UniRef50_Q3IDR5 Pseudouridine synthase n=3 Tax=Alteromonadales RepID=Q3IDR5_PSEHT Length = 229 Score = 169 bits (427), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 89/216 (41%), Positives = 132/216 (61%), Gaps = 2/216 (0%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREA 64 + +RL KYI+ +G+CSR++A R I++G V +N + A D V D + VNGQ+I + Sbjct: 3 TKIRLAKYIAHAGVCSRKQASRLIDEGAVIVNNRPANHIDHVDEQDQITVNGQII--KGT 60 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVN 124 +L+ A +KPVGI + + ++ + RV+PIGRLDKDS+GL+ LTN G+L N Sbjct: 61 AELIYFAYHKPVGIDCKLDQNDPASLYHHLPTITRVYPIGRLDKDSRGLLILTNDGELCN 120 Query: 125 KILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQG 184 +++ K YLV+V+K I EF M+AGVP+ +T C V+K A F I L QG Sbjct: 121 QLIHPDFHQPKRYLVSVNKSIDAEFCTKMAAGVPVDKQITLPCSVEKIADKQFSIILKQG 180 Query: 185 LNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGE 220 LNRQIR+M + GY+V L R +I ++L + L + Sbjct: 181 LNRQIRKMAHYCGYKVIDLYREQISELTLQTLNLAQ 216 >UniRef50_A8SLU4 Pseudouridine synthase n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SLU4_9FIRM Length = 230 Score = 166 bits (419), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 91/227 (40%), Positives = 142/227 (62%), Gaps = 7/227 (3%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAED 66 +R+NK+I+ SG CSRR AD +EQG VF+NGK AT G + D V V G+ I+ EA+ Sbjct: 1 MRINKFIANSGYCSRRNADLLLEQGKVFVNGKLATKGIDISENDEVLVEGKKIKLEEAKK 60 Query: 67 LVLIALNKPVGIVSTTEDGERDNIV-DFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNK 125 L LNKP+G ST + ++ IV D ++ +R++P+GRLDKDS GL+ LTN GDL + Sbjct: 61 YYL--LNKPIGYSSTAKAQFQEKIVLDLIDSKERIYPVGRLDKDSFGLLLLTNDGDLAFR 118 Query: 126 ILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPF---VFRITLV 182 + ++ EKEY+V VDK + E ++ +S+G+ + G +T+K + + F + ++ L Sbjct: 119 LTHPSHNVEKEYIVKVDKTLKESDLKKLSSGIMLEGKITRKARFEM-LDFKSNIVKVFLK 177 Query: 183 QGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDEL 229 +G NRQIR+M + Y V LER + L + +G +R+L+ +E+ Sbjct: 178 EGRNRQIRKMFKTLDYNVISLERIAFGKIKLGKLKVGNYRELSKEEI 224 >UniRef50_A8ZRV1 Pseudouridine synthase n=3 Tax=Desulfobacteraceae RepID=A8ZRV1_DESOH Length = 241 Score = 161 bits (408), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 92/225 (40%), Positives = 133/225 (59%), Gaps = 4/225 (1%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKP-GDVVKVNGQLIEPRE 63 +RL K++S +G+CSRR A+ YI +G V +NG+ T +G +V P D V +G + Sbjct: 9 QIRLQKFLSGAGVCSRRRAEVYIAEGRVAVNGQVVTELGTKVDPESDDVMFDGHRVTL-- 66 Query: 64 AEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLV 123 AE V IALNKP G V++ + +++ V +RVFP+GRLDK S GL+ +T+ G L Sbjct: 67 AESHVYIALNKPPGYVTSCLQKQETTVMELVAVDQRVFPVGRLDKPSCGLLLMTSDGGLH 126 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQ 183 ++ DHEKEY V D+P+++ + M G+ I G T+ KVK+ + F I L + Sbjct: 127 QRLSHPSFDHEKEYDVACDRPVSDADLDAMRRGMVITGRKTRPAKVKRLSDRRFLIILQE 186 Query: 184 GLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDE 228 G NRQIRRM E G V L R RI ++ L + G WR LT++E Sbjct: 187 GRNRQIRRMAEMLGNRVVLLRRIRIAHIHLGDLAEGRWRYLTEEE 231 >UniRef50_C6VXU0 Pseudouridine synthase n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VXU0_DYAFD Length = 555 Score = 161 bits (408), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 95/232 (40%), Positives = 141/232 (60%), Gaps = 9/232 (3%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREAE 65 +RLN+YI+ +GICSRREAD I G + +NGK T +G +V+P DVVK + + P E Sbjct: 323 IRLNRYIANAGICSRREADDLISSGQISVNGKIVTEMGYKVRPTDVVKYGKKALNP---E 379 Query: 66 DLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH--SKRVFPIGRLDKDSQGLIFLTNHGDL 122 +V I +NKP ++TT+D E R ++D + S+RV+P+GRLD+++ GL+ LTN G+L Sbjct: 380 KMVYILINKPKDYITTTDDPEERKTVLDIIAGACSERVYPVGRLDRNTTGLLLLTNDGEL 439 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAP--FVFRIT 180 K+ + +K Y +DKPIT E + AGV + + +V P V + Sbjct: 440 AEKLTHPSSGIKKIYQAELDKPITTEDFEQLKAGVELEDGFIRPDEVGLVTPDAQVVGLE 499 Query: 181 LVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDL 232 + G NR +RRM EH GYEV+KL+RT ++ +P G+WR LT+ E+I L Sbjct: 500 IHSGRNRIVRRMFEHLGYEVQKLDRTVFAGLNKKDLPRGKWRFLTEKEVIKL 551 >UniRef50_Q11U12 Pseudouridine synthase n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11U12_CYTH3 Length = 281 Score = 159 bits (401), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 87/230 (37%), Positives = 133/230 (57%), Gaps = 2/230 (0%) Query: 2 LPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEP 61 LP + + +N+++ + S+ +A + + VF+NG +A + V D + VNG++++ Sbjct: 54 LPYTFMNINEFLIKRFHISKDKASNMVLENQVFINGVKALQRNDVLKSDHIVVNGEVLQ- 112 Query: 62 REAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGD 121 E + A KP GI T +N++ + + V+P+GRLDK+S+GL+ LTN G Sbjct: 113 -EGRNFTYYAYYKPRGIECTLNAAIENNLLHTLPFGEHVYPVGRLDKESEGLLLLTNDGK 171 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITL 181 L I + N EKEYLV VDKP+T+E + +S+G+ I+G T+ +V FRI L Sbjct: 172 LYKDIAFSDNFKEKEYLVEVDKPLTDEAVEQLSSGIVIMGQKTRPARVSMVTEHSFRIIL 231 Query: 182 VQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELID 231 QGLNRQIRRMC YEV L+R RI ++ L + G +R LT E+ D Sbjct: 232 TQGLNRQIRRMCYKLRYEVTMLKRIRITSIELGDLKPGAYRVLTRAEIFD 281 >UniRef50_D2QMI8 RNA-binding S4 domain protein n=16 Tax=Bacteroidetes RepID=D2QMI8_9SPHI Length = 638 Score = 157 bits (398), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 91/235 (38%), Positives = 140/235 (59%), Gaps = 9/235 (3%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPR 62 D + RLN++I+ SG+CSRREAD I G++ +NGK T +G +VK GD VK +++ P Sbjct: 402 DGTTRLNRFIANSGVCSRREADELIAHGDISVNGKIVTEMGYKVKEGDTVKYGTKVLNP- 460 Query: 63 EAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSK--RVFPIGRLDKDSQGLIFLTNH 119 E V + LNKP ++TTED E R +++ V + R++P+GRLD+++ GL+ +TN Sbjct: 461 --ERFVYVLLNKPKDYITTTEDPEERKTVMELVADAGKFRMYPVGRLDRNTTGLLLITND 518 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAP--FVF 177 G+L +K+ N+ K Y V +DKPIT+E + G+ + K + P +V Sbjct: 519 GELADKLTHPSNNIRKIYQVELDKPITDEHFEAIKKGIELEDGPIKPDAISIVTPDAYVV 578 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDL 232 I + G NR +RR+ E FGYEV KL+RT ++ +P G+WR L E++ L Sbjct: 579 GIEIHSGRNRIVRRIFESFGYEVTKLDRTTYAGLTKKELPRGKWRFLDPKEVVKL 633 >UniRef50_C6JI84 Pseudouridine synthase n=2 Tax=Fusobacterium RepID=C6JI84_FUSVA Length = 236 Score = 154 bits (389), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 89/234 (38%), Positives = 142/234 (60%), Gaps = 6/234 (2%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAED 66 +R+NKY++ GI SRRE D+ IE+G++ +NG++AT G +V D + + G+ IE + E Sbjct: 4 MRINKYLASLGIASRREVDKMIEEGSIKINGEKATPGIKVSDKDEIYIRGKKIE-KHTEK 62 Query: 67 LVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNK 125 V LNKP+ ++S+++D R +VD +N +R+FPIGRLD ++ GLI LTN G+L N+ Sbjct: 63 KVYYILNKPLEVLSSSKDDRGRKTVVDLINCKERIFPIGRLDYNTSGLIILTNDGELFNR 122 Query: 126 ILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKV----KKEAPFVFRITL 181 I+ + KEY V V I E + + GV + +T V +++ + + Sbjct: 123 IIHPKAEIFKEYYVKVLGEIKENNVELLKNGVELDDGITLPANVRILRREKGKTELLVAI 182 Query: 182 VQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 +G NRQ+RRM + + V L R +I N+SL + LGE+R+LT+DE+ L+ L Sbjct: 183 REGRNRQVRRMMDKINHPVITLRREKIGNLSLGNLKLGEYRELTNDEINYLYSL 236 >UniRef50_Q11YT0 Pseudouridine synthase n=9 Tax=Bacteroidetes RepID=Q11YT0_CYTH3 Length = 562 Score = 154 bits (388), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 93/235 (39%), Positives = 140/235 (59%), Gaps = 11/235 (4%) Query: 3 PDS-SVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIE 60 PDS +RLNKYIS SGICSRREAD+ I +G V +NG T +G +VKPGD VK N +++ Sbjct: 324 PDSFEIRLNKYISNSGICSRREADQLIIEGTVKVNGIVVTELGYKVKPGDSVKYNNKVLN 383 Query: 61 PREAEDLVLIALNKPVGIVSTTED-GERDNIVDFVNHS--KRVFPIGRLDKDSQGLIFLT 117 P E V + LNKP ++T ED +R ++ V ++ +R++P+GRLD+++ GL+ T Sbjct: 384 P---EKSVYVLLNKPKDFITTMEDENDRKTVMQLVANATKERIYPVGRLDRNTTGLLLFT 440 Query: 118 NHGDLVNKILRAGNDHEKEYLVTVDKPIT-EEFIRGMSAGVPILGTVTK--KCKVKKEAP 174 N G+L K+ N +K Y V +DKPIT E+F + + + + K + + + Sbjct: 441 NDGELAQKLTHPSNKVKKIYEVELDKPITAEDFDKIVDGKIHLFDGPVKVDEAAIISPSK 500 Query: 175 FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDEL 229 + I + +G NR +RR+ E GY+V KL+R ++ IP G WR LT E+ Sbjct: 501 KIIGIEIHEGRNRIVRRIFESLGYDVLKLDRVMYAGLTKKNIPRGSWRYLTATEV 555 >UniRef50_C7NDY8 Pseudouridine synthase n=5 Tax=Fusobacteriaceae RepID=C7NDY8_LEPBD Length = 228 Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 85/224 (37%), Positives = 131/224 (58%), Gaps = 3/224 (1%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAED 66 +RLNK+I+E+G CSRR+AD I +G V +N A IG VKP DVV+++G+ ++ + Sbjct: 1 MRLNKFIAETGFCSRRKADELINEGRVTVNKHEAIIGMDVKPEDVVRIDGERVKLNTRYE 60 Query: 67 LVLIALNKPVGIVSTTEDG-ERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNK 125 + LNKP ++ + ED R VDF+ R+F GRLD ++GLI ++N G++ N Sbjct: 61 YYI--LNKPKRVLCSNEDKFGRRLAVDFIKSRARLFTYGRLDFMTEGLIIISNDGEVYNH 118 Query: 126 ILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQGL 185 ++ K Y+ V + I ++ I + GV I G T KVKK RI + +G Sbjct: 119 VMHPRKKLYKSYIAKVSREIEDKDIEALQHGVVIDGKRTAPAKVKKIDKKELRIAIFEGR 178 Query: 186 NRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDEL 229 NRQIR+M E GY V L+R ++ ++L + +GE+R L +DE+ Sbjct: 179 NRQIRKMLETLGYNVNSLKRIKVGELTLGNLQVGEYRALNEDEI 222 >UniRef50_A4BW35 Pseudouridine synthase n=3 Tax=Flavobacteriaceae RepID=A4BW35_9FLAO Length = 305 Score = 150 bits (380), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 85/235 (36%), Positives = 138/235 (58%), Gaps = 10/235 (4%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPRE 63 + +RLNKYI+ SG+CSRREAD YIE G+V +NG T +G +V+P DVV+ +G I P + Sbjct: 70 TGIRLNKYIANSGVCSRREADTYIEHGSVEVNGNLVTEMGYKVQPDDVVRFDGTGITPEQ 129 Query: 64 AEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHS--KRVFPIGRLDKDSQGLIFLTNHG 120 + I LNKP ++T +D R ++D ++++ +R++P+GRLD+++ GL+ TN G Sbjct: 130 KK---YILLNKPKNYITTMDDDRGRKTVMDLISNATKERIYPVGRLDRNTTGLLLFTNDG 186 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGT---VTKKCKVKKEAPFVF 177 +L K+ +D K Y ++DK + + + + V I G + V + Sbjct: 187 ELAKKLTHPKHDVRKLYHASLDKKLELKDLEKLRGEVLIEGKKVFIDAVSYVDGQPKSEV 246 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDL 232 I + G NR +R++ EH GY+V KL+R ++ +P G WR+LT+ EL +L Sbjct: 247 GIEIHSGRNRIVRKIFEHLGYKVSKLDRVIFAELTKRNLPRGRWRELTNQELSNL 301 >UniRef50_C1N350 Predicted protein (Fragment) n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1N350_9CHLO Length = 230 Score = 150 bits (380), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 95/235 (40%), Positives = 125/235 (53%), Gaps = 18/235 (7%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAEDL 67 R+NK + SRR ADR + G V +NG G V PGDVV++ G+ + E L Sbjct: 1 RVNKCFKD--FTSRRNADRLVASGAVTVNGAVVAAGAMVFPGDVVELRGERVR---WETL 55 Query: 68 VLIALNKPVGIVSTTEDGERDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTNHGDLVNKI 126 + KP G+ TT+ +R NIVD VN+ R+FP+GRLDKDS GLI LT+ G L N Sbjct: 56 NYVKYWKPRGVTCTTDARDRTNIVDAVNYPDARLFPVGRLDKDSTGLILLTSDGRLPNAA 115 Query: 127 LRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI------------LGTVTKKCKVKKEAP 174 LR+G +K+YLV VD + E +R + GV I L T C++ Sbjct: 116 LRSGRKRDKKYLVVVDAVVRPEDVRMLRDGVVISTPVQRDRVDRVLTARTLPCEIDVVGA 175 Query: 175 FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDEL 229 ITL +G NRQIRRM + GY V L RT IM + L G G W + ++EL Sbjct: 176 RTLEITLREGRNRQIRRMLDAVGYRVINLHRTEIMGIGLRGTREGRWVECDEEEL 230 >UniRef50_C7M7R0 Pseudouridine synthase n=4 Tax=Bacteroidetes RepID=C7M7R0_CAPOD Length = 387 Score = 148 bits (373), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 89/235 (37%), Positives = 137/235 (58%), Gaps = 10/235 (4%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGK-RATIGDQVKPGDVVKVNGQLIEPRE 63 + VRLNKYI+++GICSRR AD YI GNV +NG+ T+G +VKP D V+ +G+L+ + Sbjct: 152 AEVRLNKYIADAGICSRRNADMYISAGNVTVNGEVMTTLGYRVKPTDEVRFDGKLLSSEK 211 Query: 64 AEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSK--RVFPIGRLDKDSQGLIFLTNHG 120 E I LNKP G ++TT D + R ++D V ++ R+ P+GRLD+ + GL+ LTN G Sbjct: 212 KE---YILLNKPKGFITTTNDEKGRKTVMDLVANATNVRILPVGRLDRATTGLLLLTNDG 268 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI---LGTVTKKCKVKKEAPFVF 177 +L K+ + K Y V +D+ + + + G+ + L V + V + Sbjct: 269 ELTKKLTHPTHGVRKIYHVILDRKLDYKDFMKVQDGLELEDGLIEVDEISYVNDKPKNEI 328 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDL 232 I + G NR +RR+ EH GY+V+KL+R ++ +P G WR LT E+I+L Sbjct: 329 GIKIHSGRNRIVRRIFEHLGYQVEKLDRVVFAGLTKKDLPRGHWRRLTQQEVINL 383 >UniRef50_A8G0B7 Pseudouridine synthase n=19 Tax=Shewanella RepID=A8G0B7_SHESH Length = 261 Score = 148 bits (373), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 87/237 (36%), Positives = 130/237 (54%), Gaps = 21/237 (8%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQV----KPG----------DVV 52 +RL KY++ +G+CSRR A RYI G + + G++A D V P D + Sbjct: 23 IRLAKYLALTGLCSRRAATRYIRDGLIMIEGRQANHIDTVTLIESPDGLICKELLLFDGM 82 Query: 53 KVNGQLIEPREAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQG 112 V G IEP++ LNK VG + D+++ + S R++P+GRLDKDS+G Sbjct: 83 AVEG--IEPKQYR-----MLNKCVGTDCRLLPDDSDSLLHLLPASPRLYPVGRLDKDSRG 135 Query: 113 LIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKE 172 L+ LTN G+L ++ H K Y V VD+P +EF++ M+ GV T C + + Sbjct: 136 LLLLTNDGELTQHLMHPDFGHTKTYRVRVDRPYGDEFLQKMAQGVSYRDVTTLPCTMTRL 195 Query: 173 APFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDEL 229 + F I L QGLNRQIRRM + G++V L+R +I + L + GE R+LT +E+ Sbjct: 196 SEDQFEIVLTQGLNRQIRRMSQALGFKVIDLKRVKIQTLMLEDLNEGEMRELTVEEI 252 >UniRef50_C3JBA6 Pseudouridine synthase n=2 Tax=Bacteria RepID=C3JBA6_9PORP Length = 459 Score = 147 bits (371), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 85/237 (35%), Positives = 142/237 (59%), Gaps = 10/237 (4%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEP 61 P + +RLNK+++ SG+CSRR AD+ I G+V +NG+ T +G V D + V+G+ P Sbjct: 220 PKTPLRLNKFLASSGVCSRRVADQLIVDGHVSVNGEIVTQLGKHVTREDFISVDGK---P 276 Query: 62 REAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHS--KRVFPIGRLDKDSQGLIFLTN 118 E + + LNKP V+T+ D E R +D V ++ +R++P+GRLD+++ GL+ LTN Sbjct: 277 VSIEKKIYVLLNKPRNCVTTSSDPEKRLTAIDLVRNACNERIYPVGRLDRNTTGLLLLTN 336 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPIL-GTVTKKC--KVKKEAPF 175 GDL K++ + +K Y VT+DKP++ E ++ +++G+ + G + V + Sbjct: 337 DGDLAAKLMHPKYEKKKIYQVTLDKPVSVEHMQQIASGIELEDGEIHADAISYVDENNLA 396 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDL 232 + I + G NR +RR+ +H GY V KL+R ++ +P G WR LT+DE+ +L Sbjct: 397 IVGIEIHSGRNRIVRRIFKHLGYRVYKLDRVYFAGLTKKDLPRGRWRYLTEDEVRNL 453 >UniRef50_A5TWE7 Pseudouridine synthase n=10 Tax=Fusobacterium RepID=A5TWE7_FUSNP Length = 234 Score = 147 bits (370), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 85/235 (36%), Positives = 137/235 (58%), Gaps = 7/235 (2%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAED 66 +R+NK++S GI SRR D+YIE+G + +NG AT G + D + ++G+ I+ E+ Sbjct: 1 MRINKFLSTLGIASRRAIDKYIEEGRITVNGNTATTGMDINENDNIFIDGKKIKTSINEE 60 Query: 67 LVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNK 125 V LNKP+ ++S++ D R +VD + KR+FPIGRLD + GLI LTN G+L N+ Sbjct: 61 KVYFMLNKPLEVLSSSSDDRGRKTVVDLIKTDKRIFPIGRLDYMTSGLILLTNDGELFNR 120 Query: 126 ILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI-----LGTVTKKCKVKKEAPFVFRIT 180 ++ ++ K+Y + + + +E I + GV + L K K +F I+ Sbjct: 121 VVHPKSEIYKKYYIKILGELKKEEIDELKKGVLLDDGKTLPAKISGIKYDKNKTSMF-IS 179 Query: 181 LVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 + +G NRQIRRM E F Y+V L R +I ++L +P G++R+LT E+ L+ + Sbjct: 180 IREGRNRQIRRMIEKFEYKVLMLRREKIGELALGDLPEGKYRELTKQEVEYLYSI 234 >UniRef50_A1ZI67 Pseudouridine synthase n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZI67_9SPHI Length = 391 Score = 146 bits (369), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 87/233 (37%), Positives = 139/233 (59%), Gaps = 11/233 (4%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREAE 65 +RLN++IS SG+CSRREAD+ IE G + +NGK T +G QV P D VK +L++ E Sbjct: 159 MRLNRFISNSGVCSRREADKLIEMGMISVNGKVITEMGFQVSPTDTVKYGKRLLK---RE 215 Query: 66 DLVLIALNKPVGIVSTTED-GERDNIVDFVNHS--KRVFPIGRLDKDSQGLIFLTNHGDL 122 V + LNKP ++TT D +R ++D + +S +R++P+GRLD+++ GL+ TN G++ Sbjct: 216 KFVYVLLNKPKDFITTTNDPQDRKTVMDLIKNSCDERIYPVGRLDRNTTGLLLFTNDGEV 275 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI---LGTVTKKCKVKKEAPFVFRI 179 K+ +D +K Y V +DKP+ +E + ++ GV + V + + E V + Sbjct: 276 AKKLSHPSHDVKKVYQVELDKPLKDEDLDSIAEGVILEDGYAAVDEIAILNPERTLVG-V 334 Query: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDL 232 + G NR +RR+ H YEV KL+RT ++ I G+WR L++ E+I L Sbjct: 335 EIHIGRNRIVRRIFNHLDYEVVKLDRTMYAGLNKKNIDRGDWRYLSEKEVIRL 387 >UniRef50_D0MIA1 Pseudouridine synthase n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MIA1_RHOM4 Length = 268 Score = 146 bits (369), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 82/239 (34%), Positives = 137/239 (57%), Gaps = 10/239 (4%) Query: 5 SSVRLNKYISESGIC-SRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPRE 63 S +RLN+Y++ +G+C SRR+AD I G V +NG+ A +G +V P D+V+VNG + P+ Sbjct: 8 SLIRLNRYLARAGVCPSRRKADELIASGQVRVNGQVAQLGMRVGPDDIVEVNGVRVVPQT 67 Query: 64 AEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVN----HSKRVFPIGRLDKDSQGLIFLTN 118 + I +NKP ++T +D R ++D +N +FP+GRLD+++ G++ LTN Sbjct: 68 --QALYILMNKPHDTITTCDDERGRRTVLDLINLPPEQKNGLFPVGRLDRNTTGVLLLTN 125 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKV--KKEAPFV 176 G+L N+++ EK Y+ +P+ E + GV + + +V P Sbjct: 126 DGELANRLMHPRYRVEKIYVARTARPVKPEEAEQLRRGVQLEDGPARAVQVAVNPADPHE 185 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 + + +G NRQ+RRM E G+EV +L+RT ++ G+ G+WR LTD E+ L++L Sbjct: 186 IALMIYEGRNRQVRRMLEAIGHEVVQLKRTHYAGLTTKGVRPGKWRRLTDAEVRRLYRL 244 >UniRef50_Q01SF5 Pseudouridine synthase n=3 Tax=Bacteria RepID=Q01SF5_SOLUE Length = 249 Score = 146 bits (369), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 94/249 (37%), Positives = 146/249 (58%), Gaps = 13/249 (5%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEPREAE 65 RL K +S++G+ SRR+A++ +++G V +NG T +G + D +KV+G+L++ + + Sbjct: 5 RLQKILSQAGVSSRRQAEKLMQEGRVTVNGSVITELGSKADLDRDHIKVDGRLLKAPKHQ 64 Query: 66 DLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSK-RVFPIGRLDKDSQGLIFLTNHGDLV 123 + IALNKP G V+T D E R+ ++D ++ K RV+P+GRLD S+GL+ LTN G+L Sbjct: 65 --IYIALNKPKGTVTTVHDPEGRETVMDLLHRVKERVYPVGRLDYHSEGLLLLTNDGELA 122 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK----KEAPFVFRI 179 N I+ A EK Y+V V +T E GVP+ G T +K E P+ + + Sbjct: 123 NSIMSAATHLEKTYVVKVTGTLTAEQEEKFRTGVPLSGRRTLPAGLKLLSRAENPW-YEV 181 Query: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENS 239 L +G N QIR M HFG V+KL+R RI + L + G +R L ++++ L + I+ S Sbjct: 182 KLTEGRNNQIRMMFRHFGKLVEKLKRVRIGPIELGTLKTGAFRYLDEEDVAKLKRAIQRS 241 Query: 240 SSEVKPKAK 248 S KP K Sbjct: 242 SQ--KPAKK 248 >UniRef50_C6X4T2 Pseudouridine synthase n=2 Tax=Flavobacteriaceae RepID=C6X4T2_FLAB3 Length = 371 Score = 145 bits (365), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 90/238 (37%), Positives = 136/238 (57%), Gaps = 10/238 (4%) Query: 2 LPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIE 60 +P ++RLNKYI+ SGICSRREAD I QG V +NG T +G QV+ D V +GQ I Sbjct: 134 VPKETIRLNKYIANSGICSRREADELITQGLVQVNGAVVTEMGYQVQKTDKVIFDGQGIT 193 Query: 61 PREAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSK--RVFPIGRLDKDSQGLIFLT 117 P E V + LNKP G +STT+D + R ++D V ++ RVFP+GRLD+ + G+I LT Sbjct: 194 P---EKPVYVLLNKPKGYISTTKDEKARKTVMDLVANASPYRVFPVGRLDRSTTGVILLT 250 Query: 118 NHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI---LGTVTKKCKVKKEAP 174 N G + K+ + +K Y VT+D+ + + ++ GV + + V ++ + Sbjct: 251 NDGHMTKKLTHPSFNMKKIYHVTLDRKLDRADLNAIAEGVRLEEGVAEVDSISYIEGKPK 310 Query: 175 FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDL 232 I + G NR +RR+ + GYEV+ L+R ++ I G WR LT+ E+ +L Sbjct: 311 NEVGIEIHIGWNRVVRRIFQRLGYEVEALDRVMFAGLTKKNIKRGHWRILTELEVNNL 368 >UniRef50_A4CJ52 Pseudouridine synthase n=5 Tax=cellular organisms RepID=A4CJ52_9FLAO Length = 303 Score = 145 bits (365), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 86/233 (36%), Positives = 138/233 (59%), Gaps = 10/233 (4%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREAE 65 +RLNKYI+ +GICSRREAD YI GNV +NGK T +G +V+P D V+ +G+L++ RE + Sbjct: 70 IRLNKYIANAGICSRREADTYIAAGNVTVNGKTITEMGYKVQPTDEVRFDGRLLQ-RERK 128 Query: 66 DLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSK--RVFPIGRLDKDSQGLIFLTNHGDL 122 + VL LNKP ++TT D + R +++ ++ + R+ P+GRLD+++ GL+ TN G+L Sbjct: 129 EYVL--LNKPRNFITTTRDEKGRRTVMELISRASNARLVPVGRLDRNTTGLLLFTNDGEL 186 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILG---TVTKKCKVKKEAPFVFRI 179 K+ + K Y V +DK + + G+ + V + + + + Sbjct: 187 AKKLTHPKHGVRKIYHVELDKTFKSADLGKLREGLELEDGRIEVDEASYIDGASKKEVGV 246 Query: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDL 232 L G NR +RR+ EH GY+V KL+R + ++ +P G WR LT+ E+I+L Sbjct: 247 ELHSGRNRIVRRIFEHLGYQVVKLDRVVLAGLTKKDLPRGHWRHLTEQEVINL 299 >UniRef50_D1C7P2 Pseudouridine synthase n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C7P2_SPHTD Length = 337 Score = 144 bits (363), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 98/287 (34%), Positives = 153/287 (53%), Gaps = 25/287 (8%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPG-DVVKVNGQLIEPREAE 65 RL + ++ G+ SRR+A+ I G V ++G+ +G +V P ++V+G+ + P E Sbjct: 3 RLQRVLAAHGVASRRKAEELITAGRVTVDGQVVRELGVRVDPERQEIRVDGKRLRP---E 59 Query: 66 DLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVN 124 I LNKP G ++T D R ++D V +RV P GRLD+ + GL+ LTN GDL+ Sbjct: 60 RRRYIMLNKPPGYITTVSDERGRRTVMDLVQVPERVVPAGRLDRPTAGLLLLTNDGDLLF 119 Query: 125 KILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK----KEAPFVFRIT 180 +I + EKEY V VD E + + GV + G +V+ +EA V RI Sbjct: 120 RITHPRYELEKEYEVLVDGHPPPEVLDQLRRGVTVDGERVVPDQVRPLRIEEAGTVLRIV 179 Query: 181 LVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIE-NS 239 + +G NR +RRM + GY V KL RTRI + + G+PLG WRDLT E++ L + + + Sbjct: 180 IHEGRNRIVRRMMDRVGYPVLKLTRTRIGPIHVRGVPLGAWRDLTPGEVMQLLEAVGLDP 239 Query: 240 SSEVKP-----------KAKAKPKTAGIKRPVVKMEKTAEKGGRPAS 275 +S +P + + +P+ +G P + E+ A G RP + Sbjct: 240 ASAGRPLPEPGRRSDPGERRGEPRRSG---PTRRGERPAPSGARPPA 283 >UniRef50_A8S8D3 Pseudouridine synthase n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8S8D3_9FIRM Length = 233 Score = 142 bits (359), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 84/231 (36%), Positives = 128/231 (55%), Gaps = 11/231 (4%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGD-QVKPGDVVKVNGQLIEPREAE 65 +RL+KY++E+ C+R EA + +G V +NG GD Q+K D V V+G L+ ++ Sbjct: 1 MRLDKYLAETAQCTRSEAKTMLAKGRVQVNGAVCKKGDTQLKDTDTVAVDGALLTYQK-- 58 Query: 66 DLVLIALNKPVGIVSTTEDGERDNIVDFVNHS---KRVFPIGRLDKDSQGLIFLTNHGDL 122 V + LNKP G+VS + D +VD V + + +FP GRLDK S G + LT+ G Sbjct: 59 -FVYLMLNKPEGVVSASTDKRDTTVVDLVGDAYPRRELFPAGRLDKTSTGFVLLTDDGGF 117 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPIL-GTVTKKCKVKKEAP--FVFRI 179 + IL + K Y VT+D P+T+E G +AGV + GT +V +P R+ Sbjct: 118 AHDILSPRHHVSKTYTVTIDTPLTQEMCTGFAAGVTLADGTALSPAEVTALSPDGLTVRV 177 Query: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSG-IPLGEWRDLTDDEL 229 L QG+ QI+RM +G V L R I ++L + G+WR+L+D+E+ Sbjct: 178 VLRQGVYHQIKRMFGVYGAGVNALHREAIGGLALDAQLAPGQWRELSDEEV 228 >UniRef50_D1CFA0 Pseudouridine synthase n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CFA0_THET1 Length = 253 Score = 142 bits (358), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 81/232 (34%), Positives = 134/232 (57%), Gaps = 16/232 (6%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEPREAE 65 +RL+K +++ G+ SRR A+R I +G V +NG+ T G P D ++V+G+L+ R+ Sbjct: 5 IRLHKLLAQMGVASRRAAERMIAEGRVSVNGRIVNTPGAMASPEDEIRVDGKLV--RQQP 62 Query: 66 DLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVN 124 + I LNKP G++ST +D R ++D + S RV+P+GRLDKDS+GL+ LTN G+L Sbjct: 63 KMRYILLNKPAGVLSTAKDERGRKTVIDLLGQSNRVYPVGRLDKDSEGLMLLTNDGELAQ 122 Query: 125 KILRAGNDHEKEYLVTVDKPITEEFIRGMSAGV--------PILGTVTKKCKVKKEAPFV 176 +I K+Y+V V+ ++ ++ + GV P+ + + + K + Sbjct: 123 RITHPRYGVHKQYMVEVEGYFSDRSLQDLLQGVELEDGFSKPLDAKIISRSRDKSK---- 178 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDE 228 IT+ +G RQ+RR GY+VK+L R + +SL + GE+R+L+D E Sbjct: 179 LLITMGEGRKRQVRRTLAALGYKVKRLTRVALGPLSLGNLKPGEYRELSDQE 230 >UniRef50_Q0C148 Ribosomal large subunit pseudouridine synthase F n=9 Tax=Alphaproteobacteria RepID=Q0C148_HYPNA Length = 372 Score = 142 bits (358), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 89/239 (37%), Positives = 133/239 (55%), Gaps = 16/239 (6%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATI-GDQVKPGDVVKVNGQLIEPR 62 D +R+NK++++ G+CSRREAD IE+G + L+GK T+ G++V G + + R Sbjct: 10 DEPLRINKWLAQEGVCSRREADALIEKGLIQLDGKPVTVAGERVTKGQTLSLTDAAS--R 67 Query: 63 EAEDLVLIALNKPVGIVS-TTEDGE--------RDNIVDFVN----HSKRVFPIGRLDKD 109 ++ + + LNKPVG VS T E GE +N+ + S ++ P+GRLDKD Sbjct: 68 RLDNQLSVILNKPVGYVSGTPEPGEIPAIRLISEENLSGSAHAIPQRSNKMAPLGRLDKD 127 Query: 110 SQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKV 169 S GL+ L+ G L I+ +D +KEYLV V IT + + G+ + G + +V Sbjct: 128 SHGLLILSEDGVLAKAIIGPLSDMDKEYLVKVRGDITTAKVALLRHGLELDGRQLRPAEV 187 Query: 170 KKEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDE 228 +E V R L +G NRQIRRMCE V L+R R+ + L+G+P G+WR L E Sbjct: 188 TQERGQVLRFVLKEGRNRQIRRMCELVELRVLDLQRIRVGPILLAGLPQGKWRPLGAKE 246 >UniRef50_B8G2X0 Pseudouridine synthase n=3 Tax=Bacteria RepID=B8G2X0_CHLAD Length = 567 Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 103/283 (36%), Positives = 145/283 (51%), Gaps = 32/283 (11%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPG-------DVVKVNGQ 57 S RL K ++ +GI SRR+ + I G V +NG+ T+ PG D V V+GQ Sbjct: 2 SPERLQKVLASAGIASRRDCEELIAAGRVTVNGRVVTV-----PGTRVDLEHDEVLVDGQ 56 Query: 58 LIEPREAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSKRVFPIGRLDKDSQGLIFL 116 + R I L+KP G+VST ED R +VD V+ RVFP+GRLD DS+GLI L Sbjct: 57 PL--RMPAKRTYIMLHKPAGVVSTAEDPHGRPTVVDLVDVPARVFPVGRLDLDSEGLILL 114 Query: 117 TNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK-----K 171 T+ G+L + + EKEY V +D+ +T + +R GV + G +T V+ Sbjct: 115 TDDGELAYALTHPSFEVEKEYRVLLDRALTPDALRSWRNGVLLEGEMTAPAWVELLETTP 174 Query: 172 EAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELID 231 E +V RI L +G RQIR + + GYEV++L R R + L +P WR LTD+E+ Sbjct: 175 EGVWV-RIVLREGRKRQIRAVAKLLGYEVRRLVRVREGPLQLGDLPPRAWRHLTDEEVAA 233 Query: 232 LFKLIE----------NSSSEVKPKA-KAKPKTAGIKRPVVKM 263 L + S+ VK +A KP AG PV + Sbjct: 234 LRAHVSVRRSLADVPTRSTDVVKSRALDEKPHRAGDSAPVTRQ 276 >UniRef50_A4J3M3 Pseudouridine synthase n=167 Tax=Bacteria RepID=A4J3M3_DESRM Length = 309 Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 93/239 (38%), Positives = 139/239 (58%), Gaps = 14/239 (5%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEPREAE 65 RL K ++++G+ SRR ++ I G V +NGK T +G +V P D ++V G+ + P E + Sbjct: 4 RLQKILAKAGVASRRHSEELIISGQVKVNGKTVTEMGLKVDPTKDKIEVKGKPLPPLEKK 63 Query: 66 DLVLIALNKPVGIVSTTEDGERD--NIVDFVNH-SKRVFPIGRLDKDSQGLIFLTNHGDL 122 V + +NKP G V+T D ERD +VD + +RV+P+GRLD DS+GL+ LTN G+L Sbjct: 64 --VYLLMNKPRGYVTTLSD-ERDRKTVVDLLKGVEQRVYPVGRLDYDSEGLLLLTNDGEL 120 Query: 123 VNKILRAGNDHEKEYLVTVDK-PITEEFIRGMSAGVPILGTVTKKCKVKKEAP----FVF 177 + + +K YL VD P TEE ++ M+ G+ + T V+ + Sbjct: 121 TQALTHPKHKVKKTYLAKVDGIPETEE-LKAMAKGLVLEDGPTAPADVRLAGTGDNRALL 179 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLI 236 I++ +G NRQ+RRMCEH GY+V +L RTRI + L + GE R LT EL +L L+ Sbjct: 180 EISIHEGRNRQVRRMCEHIGYKVLRLRRTRIGTLELGSLKSGEVRALTKKELRELASLV 238 >UniRef50_Q7UUP0 Pseudouridine synthase n=1 Tax=Rhodopirellula baltica RepID=Q7UUP0_RHOBA Length = 395 Score = 141 bits (356), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 102/284 (35%), Positives = 154/284 (54%), Gaps = 16/284 (5%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEPREAE 65 R+N+ ++ +G SRR+ + I +G V ++G+ T +G V P V+V+G + P + Sbjct: 26 RINQLLASAGFGSRRQCEELIREGRVDVDGETITELGTTVDPDLQKVRVDGNYLRP---Q 82 Query: 66 DLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVN 124 LV +NKPVGIV+T D R ++D V ++RVFP+GRLD S+GLI LTN GDL Sbjct: 83 KLVYYVVNKPVGIVTTNRDPRGRPRVIDLVPPTERVFPVGRLDISSEGLILLTNDGDLAQ 142 Query: 125 KILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPIL-GTV----TKKCKVKKEAPFVFRI 179 K+ +K Y V V + E ++ M G+ I G V K K + +A I Sbjct: 143 KLAHPKFGIQKVYRVVVAGEVRGETMKKMREGIYIAEGLVQVDGAKIIKARTKA-TEMEI 201 Query: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENS 239 L +G NR+IRR+ FG++V++L R I + L +P G +R LT DE+ L + I+ + Sbjct: 202 RLKEGKNREIRRILARFGHKVQQLRRVAIGPLKLGDVPRGAYRKLTRDEVDKLRRSIDAA 261 Query: 240 --SSEVKPKAKAKPKTAGIKRPVVKMEKTAEK--GGRPASNGKR 279 +++ P A+ K + +RP A K GGRPA G R Sbjct: 262 EKAAKTAPPARPASKQSIKRRPGGASRNVAAKGTGGRPAFKGGR 305 >UniRef50_Q0AX41 Pseudouridine synthase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AX41_SYNWW Length = 239 Score = 141 bits (356), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 86/240 (35%), Positives = 138/240 (57%), Gaps = 10/240 (4%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREAE 65 +RL KY++ESGI SRR+A+R I QG V +N K T + +KPGD V+ G++IE Sbjct: 1 MRLAKYLAESGISSRRQAERLITQGKVKVNDKTITELAFTLKPGDRVEFAGKIIE---QT 57 Query: 66 DLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTNHGDLV 123 D + + L+KP G +S+ D + R ++D ++ + RVFP+GRLD D++GL+ L+N G+ Sbjct: 58 DKIYLLLHKPAGYISSLADPQGRPRVIDLLSAVNTRVFPVGRLDYDTEGLLLLSNDGEFS 117 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK----KEAPFVFRI 179 N + K+Y V + + IR + GV + +T +V+ K+ + + Sbjct: 118 NLMTHPRYLIPKKYEAWVQGLVKPDTIRQLEQGVALEDGITAPARVRLLSSKKGQSLLEL 177 Query: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENS 239 + +G RQI+RMC G+ V KL+RT + ++L G+P G++R LT E+ L L S Sbjct: 178 EIHEGKKRQIKRMCLAVGHRVTKLKRTALAFLTLEGVPRGQFRFLTASEVESLIMLARQS 237 >UniRef50_A5IXL5 Pseudouridine synthase n=3 Tax=Mycoplasma RepID=A5IXL5_MYCAP Length = 246 Score = 141 bits (355), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 77/232 (33%), Positives = 141/232 (60%), Gaps = 2/232 (0%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAED 66 VR+ K I++SG+ SRR+A++ I +G VF+NG +++IGD+ D +KVNG++I + Sbjct: 5 VRVQKLIAQSGLMSRRDAEKMISKGLVFVNGIKSSIGDKASMNDEIKVNGKIINLTKNTV 64 Query: 67 LVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNK 125 LNKP ++T++D + R ++D +N S+R+ P+GRLD+++ G++ LT +LVNK Sbjct: 65 FKYYLLNKPKNTITTSKDPKGRHTVIDLINTSERIVPVGRLDRNTTGVLLLTTDYELVNK 124 Query: 126 ILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQGL 185 + + E+ Y +D P+T + R ++AG+ I G ++ + V + + I+L G Sbjct: 125 LTHPKYEIERVYRARIDSPLTLKEFRELNAGIEIDGKMSYQI-VDQVDTKSYLISLHVGS 183 Query: 186 NRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIE 237 ++++ E G+ V L+R N+++ +P G +R+LT E+ +L L+E Sbjct: 184 YHHVKKLFEKIGHSVLTLKRVSYANLTVDKLPEGMYRELTIKEVKNLKLLVE 235 >UniRef50_C7ICF2 Pseudouridine synthase n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7ICF2_9CLOT Length = 235 Score = 141 bits (355), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 88/236 (37%), Positives = 136/236 (57%), Gaps = 9/236 (3%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEPRE 63 S +RL KY++ +G+ SRR+A+ I+QG V +N +G V DVV V+G+ + E Sbjct: 2 SEIRLQKYLAHAGVASRRKAEEMIKQGRVAVNNVIIENMGATVTCNDVVTVDGKPVTTEE 61 Query: 64 AEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHS-KRVFPIGRLDKDSQGLIFLTNHGD 121 A+ V I LNKPVG VST++D R ++D V + KR++P+GRLD D+ GLI LTN GD Sbjct: 62 AK--VYIMLNKPVGYVSTSKDQFGRPAVIDLVKDAGKRLYPVGRLDYDTSGLILLTNDGD 119 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKV----KKEAPFVF 177 ++ ++ K Y + + I G+ I T + KK + Sbjct: 120 FTYRLTHPKHEVNKVYEAVISGFPDKNEITRFETGLKIDDYQTSPAEFEVLNKKGINTLV 179 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF 233 RIT+ +G NRQ+R+MCE G++V L+R +I ++L +P G+WR L+D+E+ L+ Sbjct: 180 RITIHEGKNRQVRKMCEAIGHKVLTLKRIQIGPIALENLPEGKWRHLSDNEVKILY 235 >UniRef50_A3CPQ5 Pseudouridine synthase n=3 Tax=Firmicutes RepID=A3CPQ5_STRSV Length = 242 Score = 140 bits (354), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 86/238 (36%), Positives = 140/238 (58%), Gaps = 12/238 (5%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEPREAE 65 +R+NKYI+ +GI SRR+A+ I QG V +NG+ + VK GD V+V GQ P E Sbjct: 1 MRINKYIAHAGIASRRKAEELIRQGKVSINGQVVRELATNVKSGDRVEVEGQ---PIYNE 57 Query: 66 DLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSK-RVFPIGRLDKDSQGLIFLTNHGDLV 123 + V LNKP G++S+ D + R +V+ + K R++P+GRLD D+ G++ LTN GD Sbjct: 58 EKVYYLLNKPRGVISSVSDDKGRKTVVELLPQVKERIYPVGRLDWDTSGILILTNDGDFT 117 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKC--KVKKEAPF----VF 177 ++++ N+ +K Y+ V +E +R ++ G+ I G TK ++ K P V Sbjct: 118 DEMIHPRNEIDKVYVARVKGLANKEVLRPLTRGIEIEGRKTKPAVYEIIKVDPAKNRSVV 177 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 ++T+ +G N Q+++M + G +V KL RTR ++ L+G+ GE+R L+ E+ L L Sbjct: 178 QLTIHEGRNHQVKKMFQAVGLQVDKLSRTRFGHLDLTGLKPGEYRKLSKKEVSQLHTL 235 >UniRef50_B4D966 Pseudouridine synthase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D966_9BACT Length = 237 Score = 140 bits (354), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 89/230 (38%), Positives = 127/230 (55%), Gaps = 8/230 (3%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREAE 65 +RLN++++ +G+ SRR + I G V +NG+ T + QV P D VKV +L+ E Sbjct: 1 MRLNRFLASAGLGSRRGVEELITSGQVRINGQVVTDLSTQVGPTDAVKVGSRLLR---TE 57 Query: 66 DLVLIALNKPVGIVSTTEDGERD--NIVDFV-NHSKRVFPIGRLDKDSQGLIFLTNHGDL 122 + + LNKP G V T D ERD I D + + RV+ +GRLDKDS+GL+ +TN GDL Sbjct: 58 QKITVLLNKPAGYVCTASD-ERDRKTIFDLLPANWPRVYHVGRLDKDSEGLLLVTNDGDL 116 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLV 182 + EKEY V +DKP + + G I+G K +V+ P +TL Sbjct: 117 SLALTHPRYKIEKEYEVLLDKPFNPQDREKLLKGFHIIGGRAKAERVEILNPTHLSLTLT 176 Query: 183 QGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDL 232 QG+ RQIR M GYEV++L R R+ + + + GEWR LT E+ L Sbjct: 177 QGIKRQIRLMLYDLGYEVERLARIRLGPLKIGEMRPGEWRLLTSKEIAAL 226 >UniRef50_C0QWY7 Pseudouridine synthase n=2 Tax=Brachyspira RepID=C0QWY7_BRAHW Length = 229 Score = 140 bits (354), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 87/230 (37%), Positives = 127/230 (55%), Gaps = 6/230 (2%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATI-GDQVKPGDVVKVNGQLIEPREAE 65 +RLNKYI+ + SRREADR I+ GNV +NG T QV D ++ + + + E Sbjct: 1 MRLNKYIASLNLASRREADRLIQNGNVKVNGIINTNPATQVDENDKIECSIE----QYKE 56 Query: 66 DLVLIALNKPVGIVSTTEDGERDNIVDFVNHS-KRVFPIGRLDKDSQGLIFLTNHGDLVN 124 + + I LNKP G V ++ E I + + ++P+GRLDKDS GLI TN G Sbjct: 57 NKIYIKLNKPRGYVVSSNKNEGKPIYNLIKKDFDNIYPVGRLDKDSSGLILFTNDGVFAK 116 Query: 125 KILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQG 184 +I+ + EKEY V VD I + ++ + G+ + G K KVK+ F I L +G Sbjct: 117 QIIGENTNCEKEYYVRVDDNIPDGALQKLEYGISLDGQKLKPAKVKRVNKNSFHIILTEG 176 Query: 185 LNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFK 234 NRQIRRMC+ G+EV L+R RI + L + G ++ LT +E+ + K Sbjct: 177 KNRQIRRMCQKVGFEVIILKRLRISGILLEDLKEGTFKSLTKEEIESILK 226 >UniRef50_B6W7S5 Pseudouridine synthase n=2 Tax=Anaerococcus RepID=B6W7S5_9FIRM Length = 231 Score = 140 bits (354), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 84/229 (36%), Positives = 133/229 (58%), Gaps = 10/229 (4%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREAE 65 +R+NKYI+++G+ SRR+++ YI++G VF+NGK+ + QVK D VKV G+L+E +E Sbjct: 1 MRINKYIAKAGLASRRKSEEYIKKGLVFVNGKKLDDLSYQVKENDQVKVMGKLLEIKEK- 59 Query: 66 DLVLIALNKPVGIVSTTED-GERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVN 124 LNKP+G +S+ D + ++ V R F GRLDKDS GL+ +TN G + N Sbjct: 60 --FYYKLNKPIGFISSNYDPHNKKDLNSLVKIDHRFFCAGRLDKDSHGLMLITNDGKITN 117 Query: 125 KILRAGNDHEKEYLVTVDKPITEE----FIRGMSAGVPILGTVTKKCKVKKEAPFVFRIT 180 K++ EK Y+V VDK + ++ F +G+ V T K + E ++ + Sbjct: 118 KLIHPSKKIEKTYIVKVDKLLNKDDEALFRKGIKLSVN-EKTSDAKINLIDENSKIYEVI 176 Query: 181 LVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDEL 229 + QG NRQ+RRM +FG +V L+R +I + L + G+++ L EL Sbjct: 177 IHQGFNRQVRRMFLYFGSKVIDLKRIKIGQIELGKLEDGKYKKLNKKEL 225 >UniRef50_C6Y027 Pseudouridine synthase n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6Y027_PEDHD Length = 472 Score = 139 bits (351), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 87/242 (35%), Positives = 140/242 (57%), Gaps = 11/242 (4%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKP-GDVVKVNGQLIEP 61 D +RLN+YIS SGICSRR+AD IE G V +NG+ + +G ++ P D V+ NG+L++ Sbjct: 234 DGLIRLNRYISNSGICSRRKADELIEAGVVSVNGEVVSELGHKIDPVKDQVRYNGELLK- 292 Query: 62 REAEDLVLIALNKPVGIVSTTED-GERDNIVDFVNHS--KRVFPIGRLDKDSQGLIFLTN 118 E + + LNKP ++TT+D ER ++ V + +R++P+GRLD+++ GL+ +TN Sbjct: 293 --REKKIYVLLNKPKDYITTTDDPQERRTVMQLVEKASRERIYPVGRLDRNTTGLLLMTN 350 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFR 178 GDL +K+ N K Y V + + +++ + + G+ + + K V R Sbjct: 351 DGDLADKLSHPKNGITKIYHVELSRSLSQGDLNKIQFGLELEDGIIKPDSVSYVTGGSKR 410 Query: 179 ---ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 I + G NR +RR+ EH GY+V KL+R N++ +P G WR L + ELI + L Sbjct: 411 EVGIQIHSGKNRIVRRIFEHLGYDVVKLDRVVYGNLTKKDLPRGRWRYLEEHELIQIKHL 470 Query: 236 IE 237 I+ Sbjct: 471 IK 472 >UniRef50_B4U4Q4 Pseudouridine synthase n=15 Tax=Lactobacillales RepID=B4U4Q4_STREM Length = 266 Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 85/238 (35%), Positives = 142/238 (59%), Gaps = 12/238 (5%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREAE 65 +R+NKYI+ +G+ SRR+A+ I++G V LNG+ T + VK GD+V++ G P E Sbjct: 27 MRINKYIAHAGVASRRKAEELIKRGLVTLNGQVVTDLATTVKSGDLVEIEGS---PIYNE 83 Query: 66 DLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSK-RVFPIGRLDKDSQGLIFLTNHGDLV 123 + V LNKP G++S+ D + R ++D + K R++P+GRLD D+ GL+ LTN GD Sbjct: 84 EKVYYLLNKPRGVISSVSDDKGRQTVIDLLPQVKERIYPVGRLDWDTSGLLILTNDGDFT 143 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTK--KCKVKKEAP----FVF 177 +K++ N+ +K YL V +T+E +R ++ GV I G TK + ++ + P + Sbjct: 144 DKMIHPRNEIDKVYLARVKGVVTKESLRPLTRGVVIDGKKTKPARYRIIRVEPDKNRSIV 203 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 +T+ +G + Q+++M E G+ V KL RT+ ++ + G+ GE R L+ E+ L L Sbjct: 204 ELTIHEGRHHQVKKMFEAVGHLVDKLSRTQFGSLDVRGLKPGEARRLSKKEVSQLHHL 261 >UniRef50_B2A4P2 Pseudouridine synthase n=2 Tax=Clostridia RepID=B2A4P2_NATTJ Length = 238 Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 84/234 (35%), Positives = 139/234 (59%), Gaps = 7/234 (2%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEPREA 64 +RL K++S +GI SRR+++ I+QG V +NG+ T +G ++ P D VKV+G+ I E+ Sbjct: 1 MRLQKFMSRAGIASRRKSEELIQQGRVTVNGQVITRLGTKINPDTDTVKVDGEPITQEES 60 Query: 65 EDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLV 123 V I LNKP +++ +D + R ++D + +RV+P+GRLD DS+GL+ LTN G+L Sbjct: 61 N--VYIMLNKPKDYITSKDDPQGRKTVMDLIQVKERVYPVGRLDYDSRGLVLLTNDGELA 118 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK--KEAPFVFRITL 181 N+++ + K Y+V VDK ++ + + G+ + + K V+ + +I L Sbjct: 119 NRLMHPKYNIPKTYMVKVDKLPLQDKLDNLVNGIYLEEGLCKADHVEILDTKNNILKIIL 178 Query: 182 VQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 +G RQIRRM G EVK L+R + ++L + G +R LT DE+ ++ KL Sbjct: 179 SEGRKRQIRRMLASLGIEVKDLKRDSLGTLTLKDLSEGNYRKLTKDEIDNIKKL 232 >UniRef50_Q4AAG8 Pseudouridine synthase n=6 Tax=Mycoplasma RepID=Q4AAG8_MYCHJ Length = 240 Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 77/235 (32%), Positives = 137/235 (58%), Gaps = 3/235 (1%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAED 66 +R+NK++SE G+CSRR++++ I QG + +N + A IG + DV++++ Q I + Sbjct: 4 IRINKFLSEMGVCSRRQSEKLILQGRIKINNETAKIGQIISQNDVIELDQQKITKKPP-- 61 Query: 67 LVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNK 125 + ALNKP +++ D E R I++F + ++ +FP+GRLD + GLI +TN G NK Sbjct: 62 IFWYALNKPKNYITSRFDPENRPTIMEFFSKNEYLFPVGRLDFQTTGLILITNDGKTTNK 121 Query: 126 ILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQGL 185 +L + E+ YLV D ++++ IR ++ L +V K+KK + + +T+ QG Sbjct: 122 LLHPSSKIERTYLVKTDFSLSDKEIRFLNDNKIQLDSVKSIQKIKKCSSRTYLVTVWQGS 181 Query: 186 NRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSS 240 N I+++ +V KL+R N+ L I G++R LT+ E+ L ++N++ Sbjct: 182 NHHIKKLFLSISKKVLKLKRVSFANIKLDNISEGKYRKLTNQEIKSLENQVKNTT 236 >UniRef50_B3QY10 Pseudouridine synthase n=10 Tax=Chlorobiaceae RepID=B3QY10_CHLT3 Length = 297 Score = 138 bits (347), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 88/242 (36%), Positives = 134/242 (55%), Gaps = 8/242 (3%) Query: 2 LPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQV-KPGDVVKVNGQLI 59 + D +RLNK+I+ G SRR+AD IEQG V +NGK +G +V + D V VNG+ + Sbjct: 38 INDPIIRLNKFIALCGEASRRKADEMIEQGEVMVNGKVVMELGYKVDRRADEVVVNGKKL 97 Query: 60 EPREAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTN 118 E + I LNKP +V+T+ D + R +V+ V RVFP+GRLD+D+ G++ LTN Sbjct: 98 H--ENTQKIYILLNKPKDVVTTSSDEKSRKTVVELVGLKDRVFPVGRLDRDTTGVLLLTN 155 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI--LGTVTKKCKVK-KEAPF 175 GDL ++ +K+Y+ T+DK IT ++ + G + G C + + + Sbjct: 156 DGDLTYRLTHPTFGVQKQYVATLDKKITSVDLQNIKKGFRLKDTGEKVSPCNARILDDGY 215 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 + + +G N QI RM FGY VKKL R + + + GEWR LT E+ L+K Sbjct: 216 TIWVAIHEGKNHQIHRMFWSFGYNVKKLVRVAYGGLEVGTMRRGEWRFLTQLEVSKLYKQ 275 Query: 236 IE 237 ++ Sbjct: 276 VQ 277 >UniRef50_B0N6F1 Pseudouridine synthase n=3 Tax=Bacteria RepID=B0N6F1_9FIRM Length = 241 Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 90/238 (37%), Positives = 133/238 (55%), Gaps = 12/238 (5%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREAED 66 RL K I+ SG SRR+A+ I QG V +NGK T +G +VK GD++ V G+ P E+ Sbjct: 3 RLQKAIAASGYTSRRKAEDLIVQGKVEVNGKVVTELGTKVKQGDLITVEGK---PLVGEN 59 Query: 67 LVLIALNKPVGIVSTTEDG-ERDNIVDFVNHSK-RVFPIGRLDKDSQGLIFLTNHGDLVN 124 V KP G V T +D +R I D+ K R++P+GRLD D+ GLI ++N G+ N Sbjct: 60 KVYYVFYKPKGCVCTLDDEFDRPIITDYFTEVKERIYPVGRLDFDTTGLIIMSNDGEFAN 119 Query: 125 KILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK------KEAPFVFR 178 I+ + EK Y V++ IT + + GV + G T CK+K + + + Sbjct: 120 MIMHPRSHLEKIYEVSIKGLITGPTLNKLEKGVYLEGVKTLPCKIKVVDKDTEHKTTMLK 179 Query: 179 ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLI 236 I LV+G NRQ+++M E G+ VK+L R I ++L G+ G +R L E+ DL KL+ Sbjct: 180 IKLVEGKNRQVKKMFESVGHPVKRLHRVSIGGINLKGLTPGRYRILKPQEVKDLKKLV 237 >UniRef50_A5V220 Pseudouridine synthase n=5 Tax=Bacteria RepID=A5V220_ROSS1 Length = 624 Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 89/255 (34%), Positives = 138/255 (54%), Gaps = 31/255 (12%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREA 64 S+ RL K ++ +GI SRR+ + YI G V +NGK VV++ G ++P Sbjct: 2 SAERLQKVLASAGIASRRDCEEYIAAGRVMVNGK------------VVRIPGTRVDPEHD 49 Query: 65 EDLV------------LIALNKPVGIVSTTEDGE-RDNIVDFVNHSKRVFPIGRLDKDSQ 111 E LV + L+KP G+VSTT+D + R ++D VN +R+FP+GRLD DS+ Sbjct: 50 EILVDGRPIGKIHHRTYVMLHKPAGVVSTTDDPQGRPTVIDLVNLEQRLFPVGRLDYDSE 109 Query: 112 GLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK- 170 GL+ LT+ G+L K+ EKEY V +++ + +R GV + G T V+ Sbjct: 110 GLLLLTDDGELTQKLTHPSYQVEKEYRVLLNEAPSPAALRAWRTGVELDGVKTAPAWVEL 169 Query: 171 ----KEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTD 226 + +V R+ L +G RQIR + GYEV++L R R ++L +P G WR LTD Sbjct: 170 IERTPDGAWV-RVILHEGRKRQIREVARVLGYEVRRLIRVREGPLTLGDLPSGTWRFLTD 228 Query: 227 DELIDLFKLIENSSS 241 +E+ L + E +++ Sbjct: 229 EEVDMLREHAERNAA 243 >UniRef50_C7LZX4 Pseudouridine synthase n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LZX4_ACIFD Length = 254 Score = 137 bits (346), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 91/237 (38%), Positives = 129/237 (54%), Gaps = 4/237 (1%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPG-DVVKVNGQLIEPREA 64 SV+++ ++ +G SRR + I G V +NG+ ATIG +V+PG D V+ +G I E Sbjct: 5 SVKVHVLLARAGCGSRRVLEDAIRDGRVRINGEVATIGARVRPGVDRVEFDGLEIATEEQ 64 Query: 65 EDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLV 123 + L LNKP G+VS+ D E R + V + RV+P+GRLD DS+GL+ LTN G L Sbjct: 65 REYWL--LNKPRGVVSSVVDPEGRPTVRSLVATTSRVYPVGRLDVDSEGLLILTNDGPLT 122 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQ 183 ++ KEYLV VD+P+ R + GV + G + + V P + RI L + Sbjct: 123 YQLTHPRFHVPKEYLVWVDRPVPRRLGRELREGVEVDGELLRASSVGTVGPRLVRIVLTE 182 Query: 184 GLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSS 240 G NRQIRRM G V++L R RI + +P G R L EL L + I +S Sbjct: 183 GRNRQIRRMVGAVGLSVERLVRVRIGPLVDPHLPPGVARRLEPRELARLRRAIGAAS 239 >UniRef50_C6XI22 RNA-binding S4 domain protein n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XI22_HIRBI Length = 315 Score = 137 bits (346), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 107/312 (34%), Positives = 151/312 (48%), Gaps = 46/312 (14%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAEDL 67 R+NK++ +SG+CSRREA+ +EQG + ++G + T +PG ++ L A D Sbjct: 14 RINKWLGQSGVCSRREAEGLVEQGLISIDGVKVT-----EPGRKIEKGETLTLADAATDK 68 Query: 68 VLIA----LNKPVGIVSTTED----------------GERDNIVDFVNHSKRVFPIGRLD 107 + A LNKP+ VS + G+ + I D R+ P+GRLD Sbjct: 69 LASAMSVILNKPIDYVSAHPNEGEVPAVRLLTKANLSGQSETIPD---RDTRLAPVGRLD 125 Query: 108 KDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKC 167 KDS+GL+ LT G L ++ D EKEYLVTV+ IT E IR + G+ + G K Sbjct: 126 KDSRGLLILTEDGVLTKAVIGPDADSEKEYLVTVNGTITHEKIRRLCHGLRMDGRALKPA 185 Query: 168 KVKKEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDD 227 V E V R L +G NRQIRRM E V L R RI +V + +P G+WR +T Sbjct: 186 IVTHEGGQVLRFILTEGRNRQIRRMAELVQLHVVDLFRIRIGHVHIGELPEGKWRTMTTH 245 Query: 228 E---LIDLFKLIEN------SSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGK 278 E LID K ++ SS+ V P+ KP V+ + T+ K P N Sbjct: 246 ERDGLIDKSKADKSLKPDPISSTFVPPEKPEKP---------VRRQGTSAKKLDPYRNAD 296 Query: 279 RFTSPGRKKKGR 290 ++ K K R Sbjct: 297 GYSKRNYKAKSR 308 >UniRef50_C4XEA6 Pseudouridine synthase n=1 Tax=Mycoplasma fermentans PG18 RepID=C4XEA6_MYCFE Length = 269 Score = 137 bits (346), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 78/231 (33%), Positives = 136/231 (58%), Gaps = 3/231 (1%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAED 66 +R+ K I+++G CSRR+A+ YIE+ V +NGK +GD+ D +K+N QLI ++ + Sbjct: 28 IRVQKLIAQTGYCSRRKAEEYIEKKLVKVNGKIVQLGDKASENDEIKINNQLISLQKP-N 86 Query: 67 LVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNK 125 V LNKP +ST +D + R +VD +N+S+R+ P+GRLD D+ G + LTN +++NK Sbjct: 87 FVYFLLNKPKKTISTVKDPKGRKTVVDLINYSERIAPVGRLDYDTTGALLLTNDWEMINK 146 Query: 126 ILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQGL 185 + + + Y V +D P++ + + ++AG+ + G +K+ V + + +TL G Sbjct: 147 LTHPKYEILRTYRVRIDSPLSLKEFKLINAGLIVNGKFSKQI-VDQVDTKSYLVTLHVGS 205 Query: 186 NRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLI 236 I+ + + +EV L+R N+++ +P G +R LT E+ DL LI Sbjct: 206 YHHIKELFKALNHEVINLKRVSFANLTVEKMPEGSYRTLTLKEIKDLKVLI 256 >UniRef50_D0J8G4 Pseudouridine synthase, Rsu n=96 Tax=Bacteria RepID=D0J8G4_COMTE Length = 642 Score = 137 bits (345), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 92/250 (36%), Positives = 135/250 (54%), Gaps = 28/250 (11%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREA 64 +VR+NK I++ G+CSRREAD ++E G V +NG+ AT+G V PGD ++++ + E ++ Sbjct: 393 GAVRINKRIADMGMCSRREADEWVENGWVTVNGEVATMGQNVVPGDRIEIDQKAQERQDQ 452 Query: 65 EDLVLIALNKPVGIVS-TTEDGERDNIVDFVNHS----------------KRVFPIGRLD 107 + V I LNKP+G VS EDG +V N + K + P GRLD Sbjct: 453 Q--VTILLNKPMGYVSGQAEDGHEPAVVLITNENRWNEDRSKTRFNFSQLKGLAPCGRLD 510 Query: 108 KDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTV---DKPIT------EEFIRGMSAGVP 158 DS GL+ LT G + +I+ ++ +KEYLV V D+ + EE + + G+ Sbjct: 511 IDSVGLLVLTQDGRVARQIIGEDSEVDKEYLVRVTFGDRDVDVQSVFPEEKLALLRHGLS 570 Query: 159 ILGTVTKKCKVKKEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPL 218 + K +V + P R L +G RQIRRMCE G +V L+R RI V+L +P Sbjct: 571 LDEQPLKPAQVDWQNPEQLRFVLTEGKKRQIRRMCEQVGLKVVGLKRIRIGGVTLGNLPT 630 Query: 219 GEWRDLTDDE 228 G+WR L E Sbjct: 631 GQWRYLAPHE 640 >UniRef50_C7H4Z6 Pseudouridine synthase n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H4Z6_9FIRM Length = 235 Score = 137 bits (345), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 81/231 (35%), Positives = 127/231 (54%), Gaps = 11/231 (4%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGD-QVKPGDVVKVNGQLIEPREAE 65 +RL+KY++E+ C+R EA + +G V +NG GD Q++ GD V V+G + R+ Sbjct: 1 MRLDKYLAETAQCTRSEAKTLLNRGRVTVNGAVCKKGDTQLREGDSVAVDGAPLAYRQ-- 58 Query: 66 DLVLIALNKPVGIVSTTEDGERDNIVDFVNHS---KRVFPIGRLDKDSQGLIFLTNHGDL 122 V + LNKP G+VS + D +VD + + + +FP+GRLDK S G + LT+ G Sbjct: 59 -FVYLMLNKPEGVVSASTDKRDTTVVDLIGDAYPRRELFPVGRLDKTSTGFVLLTDDGGF 117 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPIL-GTVTKKCKVKKEAP--FVFRI 179 ++IL K Y V +D P+TEE RG + GV + GT +V+ P ++ Sbjct: 118 AHEILAPKRHVSKTYTVVIDTPLTEEMRRGFAEGVTLADGTALSPAEVEALTPDGLTVKV 177 Query: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDEL 229 L QG+ QI+RM +G V L R I ++L + G+WR+L+ +E+ Sbjct: 178 RLRQGVYHQIKRMFGVYGAGVNALHRDAIGGLALDPALAPGQWRELSAEEV 228 >UniRef50_C2MA52 Pseudouridine synthase n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2MA52_9PORP Length = 472 Score = 136 bits (343), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 84/236 (35%), Positives = 132/236 (55%), Gaps = 22/236 (9%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREAE 65 +RLNK++S SG+CSRR AD+YI G V +NG + +G QV P D V V+ + P E Sbjct: 206 IRLNKFLSNSGLCSRRTADQYIAAGRVKVNGAVVSELGSQVLPTDQVMVDDK---PVTLE 262 Query: 66 DLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH--SKRVFPIGRLDKDSQGLIFLTNHGDL 122 V + LNKP V+T D E R ++D V++ ++R++PIGRLD+++ G++ LTN GDL Sbjct: 263 AKVYVLLNKPKNCVTTLTDPEGRRTVMDLVHNACTERIYPIGRLDRNTTGILLLTNDGDL 322 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI---------LGTVTKKCKVKKEA 173 +++ +K Y V +DK +T E ++ ++ G + + +T + K Sbjct: 323 AVRLMHPAFRKKKIYEVALDKEVTVEHMQMIAHGFELEDGEIHADAISYITGQTHDK--- 379 Query: 174 PFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDEL 229 I + G NR +RR+ EH GY V L+R ++ +P G WR LT +E+ Sbjct: 380 ---VGIEIHSGRNRIVRRIFEHLGYRVVHLDRVYYAGLTKKDLPRGRWRYLTPEEV 432 >UniRef50_UPI0001BC54DC ribosomal large subunit pseudouridine synthase B n=3 Tax=Fusobacterium RepID=UPI0001BC54DC Length = 239 Score = 136 bits (343), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 82/239 (34%), Positives = 133/239 (55%), Gaps = 6/239 (2%) Query: 2 LPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEP 61 + ++ +R+NK+++ G+ SRR+ D +IE+G + +NG AT G +V D + VNG+ I Sbjct: 1 MEENKIRINKFLASKGLASRRQVDLWIEEGRISVNGSLATSGQKVSEEDDIVVNGKSISQ 60 Query: 62 REAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGD 121 ++ + + + + + + +D R +VD V R+FP+GRLD + GLI LTN GD Sbjct: 61 KKQKKVYYLLYKEEEVLSAVKDDRGRRTVVDCVLSPYRIFPVGRLDYRTSGLILLTNDGD 120 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRG-----MSAGVPILGTVTKKCKVKKEAPFV 176 L N+++ + K Y V +T+E ++ L + K K +K F Sbjct: 121 LFNRMMHPRAEIFKSYEVLAKGHLTKEQLKTLEEGVELEEGKTLAALIAKVKYEKGNTF- 179 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 F I++ +G NRQIRRM E G V +L RT+I +SL G+ LGE+R L + E+ L+ L Sbjct: 180 FEISIREGKNRQIRRMVEAVGSRVYRLRRTKIGKLSLDGLSLGEYRALEEKEIEYLYSL 238 >UniRef50_B0S1L0 Pseudouridine synthase n=2 Tax=Finegoldia magna RepID=B0S1L0_FINM2 Length = 242 Score = 136 bits (343), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 84/234 (35%), Positives = 133/234 (56%), Gaps = 17/234 (7%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGK-RATIGDQVKPGDVVKVNGQLIEPREAE 65 +R+NK+I++SG CSRR AD I+ V++NG + QV D+V+V G+ I +E Sbjct: 1 MRINKFIAQSGYCSRRNADELIKNSKVYVNGTILLDLSYQVNDTDIVEVEGKKINLKE-- 58 Query: 66 DLVLIALNKPVGIVSTTEDGERDN-IVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVN 124 D + IA+NKP+G ST +D D +VD + RV+P+GRLDKDS GL+ LTN G+ Sbjct: 59 DKIYIAINKPIGYASTVKDKFADKKVVDLIKSDTRVYPVGRLDKDSHGLLILTNDGEFTY 118 Query: 125 KILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFV-------- 176 ++ +H+K Y V V + I+ + G+ + G KK K++ F+ Sbjct: 119 ELTHPKFEHKKIYEVLVKGKPNKTEIKQLKDGILLDGYKLKKSKIE----FIENVKNDTK 174 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDEL 229 +R+T+ +G NRQIRRM + + V L+R +I N + + + GE++ L +L Sbjct: 175 YRVTIFEGRNRQIRRMFDFINHPVLDLKRVQIGNYKMENSLKSGEYKLLKSKDL 228 >UniRef50_Q65HX7 Pseudouridine synthase n=5 Tax=Firmicutes RepID=Q65HX7_BACLD Length = 244 Score = 136 bits (342), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 88/243 (36%), Positives = 138/243 (56%), Gaps = 12/243 (4%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEPREAED 66 RL K I+ +GI SRR+A+ I++G V +NGK +G +V D ++VNG +E +E+ Sbjct: 3 RLQKVIAHAGIASRRKAEELIKEGRVTVNGKTVRELGVKVSSSDRIEVNGVQLE---SEE 59 Query: 67 LVLIALNKPVGIVSTTEDGE-RDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTNHGDLVN 124 V L KP G++S +D + R + DF +R++PIGRLD D+ GL+ LTN GD N Sbjct: 60 PVYFLLYKPRGVISAVKDDKGRKVVTDFFTEVEERIYPIGRLDYDTSGLLLLTNDGDFAN 119 Query: 125 KILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK------KEAPFVFR 178 K++ + K Y+ + +E ++ + GV + T KVK K+ + + Sbjct: 120 KLMHPKYEINKTYVAKLKGIPLKENLKKLERGVRLEDGKTAPAKVKLLSLDKKKQTSIVQ 179 Query: 179 ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIEN 238 IT+ +G NRQ+RRM E G+EV KL+R ++L+G+ GE R+LT E+ L L E+ Sbjct: 180 ITIHEGRNRQVRRMFEAIGHEVLKLKREEYAFLNLAGLKTGEKRELTPHEVKRLRALAEH 239 Query: 239 SSS 241 + Sbjct: 240 GKA 242 >UniRef50_C8NZC3 Pseudouridine synthase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZC3_ERYRH Length = 246 Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 89/228 (39%), Positives = 132/228 (57%), Gaps = 10/228 (4%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPRE 63 +++RL K+I+ SG CSRR+A+ I +G V +NG + T G +V D V VNG LI E Sbjct: 5 NNIRLQKFIAMSGYCSRRKAEVLINEGKVKVNGIKVTEQGLKVSTEDRVMVNGILINVEE 64 Query: 64 AEDLVLIALNKPVGIVSTT-EDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDL 122 + V LNKP GIVS+ +D +R+++VD V + RVFP+GRLD+++ G + LTN GD Sbjct: 65 KK--VYYILNKPRGIVSSANDDKDRESVVDLVPNDIRVFPVGRLDRETTGALILTNDGDF 122 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKC---KVKKEAP---FV 176 + D K Y V+V ++ E + G+ I G K +VK +A Sbjct: 123 AYYMTHPKFDLSKIYRVSVRGRLSYEVTNSLKEGITIEGVEYKGVEISRVKYDAAKDKTQ 182 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDL 224 F ITL +G NRQIR++ HFG V KL R +I + + + +G++R+L Sbjct: 183 FSITLHEGKNRQIRKIFAHFGLPVLKLHRYQIGYLDIDELKIGQYREL 230 >UniRef50_B0MSS4 Pseudouridine synthase n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MSS4_9BACT Length = 451 Score = 135 bits (341), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 84/236 (35%), Positives = 131/236 (55%), Gaps = 9/236 (3%) Query: 3 PDSSVRLNKYISESGICSRREADRYIE-QGNVFLNGKRATIGDQVKPGDVVKVNGQLIEP 61 P +RLN++I++SGICSRREAD +I+ T+G +V+P D VK N +E Sbjct: 213 PTGEIRLNRFIAQSGICSRREADDFIQAGLVTVNGVVVTTLGTKVQPTDEVKFNDSRVE- 271 Query: 62 REAEDLVLIALNKPVGIVSTTEDGERD-NIVDFVNH--SKRVFPIGRLDKDSQGLIFLTN 118 E V + LNKP G V++ +D D +++ V ++R++P+GRLDK+S GL+ TN Sbjct: 272 --GEKKVYLVLNKPKGYVTSLDDPHADKTVMELVKDACTERIYPVGRLDKNSVGLLLFTN 329 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILG--TVTKKCKVKKEAPFV 176 GDL ++ +K Y V++DKP+T+ + ++ G+ + + KE Sbjct: 330 DGDLTRQLTHPSFQKKKIYQVSLDKPLTKADMEQIAQGITLEDGEIYADEIAYVKEDKTE 389 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDL 232 I + G NR +RR+ EH GY VKKL+R +S + G+WR LT +E+ L Sbjct: 390 VGIEIHSGRNRIVRRIFEHLGYAVKKLDRVYYAGLSKKNLKRGQWRFLTREEVQRL 445 >UniRef50_C7H5G4 Pseudouridine synthase n=8 Tax=Clostridiales RepID=C7H5G4_9FIRM Length = 294 Score = 135 bits (339), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 90/260 (34%), Positives = 138/260 (53%), Gaps = 10/260 (3%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPG-DVVKVNGQLIEPREAED 66 R+ K ++E G+CSRR A++ I +G V +NG +GD++ P DV+ V+ + I ++ + Sbjct: 22 RIQKIMAEQGLCSRRAAEQIIAEGRVKVNGHPVKVGDKMDPNRDVLHVDDERIYIQKNQQ 81 Query: 67 LVLIALNKPVGIVSTTEDG-ERDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTNHGDLVN 124 L +AL KP G V+T D R +++ V+ R++P+GRLDKDS+GL+ +TN G Sbjct: 82 LYYLALYKPRGYVTTASDELGRKTVMELVSDIPARLYPVGRLDKDSEGLLLMTNDGAFAQ 141 Query: 125 KILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI-LGTVTKKCKVK----KEAPFVFRI 179 + K Y VTV E I MS+GV + GT T C + + V + Sbjct: 142 AVTHPSGGISKLYRVTVQPRADESQILKMSSGVVLDDGTKTMPCAINVVTDEPGRTVMEM 201 Query: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENS 239 TL +G NR+IRRMCE G EV +L+R V L + G +R+LT E+ L Sbjct: 202 TLKEGKNREIRRMCEAVGLEVVRLKRNAEGVVKLGMLKPGTYRELTKAEVSGLRAAAAKG 261 Query: 240 SSEVKPKAKAKPKTAGIKRP 259 ++ ++ A A +RP Sbjct: 262 RAQT--RSAALQSKAAARRP 279 >UniRef50_B3U4L2 Pseudouridine synthase n=3 Tax=Bacteria RepID=B3U4L2_9BACT Length = 420 Score = 134 bits (338), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 91/240 (37%), Positives = 134/240 (55%), Gaps = 10/240 (4%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEPREA 64 VRL K I+ +G+ SRR+A+ I G V +NG +G +V P D VKV+G+ + R A Sbjct: 3 VRLQKLIAGTGLASRRKAEELITSGRVTINGSVVKELGTKVDPARDHVKVDGKHL--RAA 60 Query: 65 EDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTNHGDL 122 + V + LNKP ++ST +D E R + D ++ + RVFP+GRLD DS+GL+ LTNHGDL Sbjct: 61 QPYVYLILNKPKNVMSTLDDPEGRPTVKDLLHGVTVRVFPVGRLDFDSEGLMLLTNHGDL 120 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKK----EAPFVFR 178 +L K YL+ V + + I + GV + T KVKK E+ Sbjct: 121 AQALLHPRYHVPKTYLIKVKGVLDDAKIEALERGVKLEDGFTAPAKVKKVSRAESNSWLE 180 Query: 179 ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIEN 238 +T+ +G Q++RM E G+ V KL R R+ + L + E+R LTD E L +L+E+ Sbjct: 181 VTIHEGRKHQVKRMVEAVGHSVIKLVRVRMGPLLLGDLAPREYRFLTDREANRLRELVED 240 >UniRef50_B2RK43 Pseudouridine synthase n=1 Tax=Porphyromonas gingivalis ATCC 33277 RepID=B2RK43_PORG3 Length = 439 Score = 134 bits (337), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 81/237 (34%), Positives = 140/237 (59%), Gaps = 10/237 (4%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEP 61 P+ +RLNK++S +G+CSRREAD IE+G + +NG+ T +G ++ D V + + Sbjct: 200 PNEPIRLNKFLSNAGVCSRREADLLIEKGEITVNGEVVTELGRRITRQDEVIYKDKRV-- 257 Query: 62 REAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHS--KRVFPIGRLDKDSQGLIFLTN 118 E E V + LNKP V+T++D E R ++D V ++ +R++P+GRLD+++ G++ +TN Sbjct: 258 -EIESKVYVLLNKPKNCVTTSDDPECRTTVMDIVRYACPERIYPVGRLDRNTTGVLLITN 316 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI-LGTVTKKC--KVKKEAPF 175 GDL +K+ +K Y V ++K ++ E ++ ++ GV + G + VK++ Sbjct: 317 DGDLASKLTHPSFKKKKIYHVWLNKDVSIEDMQKIADGVELDDGEIHADAISYVKEDDLS 376 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDL 232 I + G NR +RR+ EH GY V KL+R ++ +P G+WR L + E+ +L Sbjct: 377 QVGIEIHSGRNRIVRRLFEHLGYRVVKLDRVYFAGLTKKNLPRGKWRYLNEQEVNNL 433 >UniRef50_Q3B289 Pseudouridine synthase n=2 Tax=Chlorobium/Pelodictyon group RepID=Q3B289_PELLD Length = 250 Score = 134 bits (336), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 79/239 (33%), Positives = 141/239 (58%), Gaps = 9/239 (3%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEP 61 + +VR+N+Y++ GI SRR AD+ + +G V +NG A+ G +V PG D V V+G Sbjct: 10 NEAVRINRYLAMCGIASRRAADQMVLEGRVTINGVLASEPGVKVVPGKDEVIVDGSKFAQ 69 Query: 62 REAEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHG 120 E + I NKP +++T+ D R+ ++DF++ ++RV+P+GRLD+ + G++ LTN G Sbjct: 70 PEGRK-IYILFNKPRNVITTSSDERNREMVLDFIDVNERVYPVGRLDRKTTGVLLLTNDG 128 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTK----KCKVKKEAPFV 176 L NK++ ++ +KEY+ +D P + + ++ G+ + T K + K+ + V Sbjct: 129 MLANKLMHPSSNVKKEYIAVLDAPFPQASLPLLTGGMRLSDTGEKVSPCQAKIMGDGSQV 188 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 + I++ +G N Q+RRM + G+EV +L+R +++ + G+WR LT E+ L L Sbjct: 189 W-ISIHEGKNHQVRRMFKTLGFEVTRLDRPTYAGLTVGDLRRGQWRHLTRTEVQQLRHL 246 >UniRef50_B9KY92 Pseudouridine synthase n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KY92_THERP Length = 282 Score = 134 bits (336), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 86/236 (36%), Positives = 131/236 (55%), Gaps = 10/236 (4%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPG-DVVKVNGQLIEPREAE 65 RL + ++ G+ SRR+A+ I G V ++G +G +V P + V+G+ P +E Sbjct: 9 RLQRVLAAHGVASRRKAEELILAGRVTVDGVVVRELGRKVDPERQEICVDGK---PLHSE 65 Query: 66 DLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVN 124 I L+KPVG ++TT D R ++D V +RV P+GRLD+DS GL+ LTN GDL+ Sbjct: 66 PRRYIVLHKPVGYITTTADEYGRKTVLDLVQVPERVVPVGRLDRDSSGLLLLTNDGDLIY 125 Query: 125 KILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILG--TVTKKCKVKKEAP--FVFRIT 180 +I + EKEY V VD E + GVP+ G ++ + + P V+R+ Sbjct: 126 RITHPRYELEKEYEVLVDGFPPPEVEEALRRGVPVDGRPVRIRRLEAIRVEPQGTVYRVV 185 Query: 181 LVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLI 236 + +G NR IRR+ E GY V +L+R R+ + L +P G WRDLT E+ L + + Sbjct: 186 IHEGRNRIIRRVFERVGYPVLRLQRVRVGPLRLGDLPPGRWRDLTASEVAALRRAV 241 >UniRef50_P35159 Ribosomal large subunit pseudouridine synthase B n=200 Tax=Bacteria RepID=RLUB_BACSU Length = 244 Score = 133 bits (334), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 85/243 (34%), Positives = 138/243 (56%), Gaps = 12/243 (4%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREAED 66 RL K I+ +G+ SRR+A+ I++G V +NGK T +G +V D ++VNG +E E+ Sbjct: 3 RLQKVIAHAGVASRRKAEELIKEGKVKVNGKVVTELGVKVTGSDQIEVNGLKVE---REE 59 Query: 67 LVLIALNKPVGIVSTTEDGE-RDNIVDFV-NHSKRVFPIGRLDKDSQGLIFLTNHGDLVN 124 V L KP G++S +D + R + DF N +R++PIGRLD D+ GL+ LTN G+ N Sbjct: 60 PVYFLLYKPRGVISAAQDDKGRKVVTDFFKNIPQRIYPIGRLDYDTSGLLLLTNDGEFAN 119 Query: 125 KILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKV------KKEAPFVFR 178 K++ + +K Y+ V +E +R + G+ + T K KK+ + + Sbjct: 120 KLMHPKYEIDKTYVAKVKGIPPKELLRKLERGIRLEEGKTAPAKAKLLSLDKKKQTSIIQ 179 Query: 179 ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIEN 238 +T+ +G NRQ+RRM E G+EV KL+R ++L G+ G+ R+LT E+ L L ++ Sbjct: 180 LTIHEGRNRQVRRMFEAIGHEVIKLKREEYAFLNLRGLHTGDARELTPHEVKRLRALADH 239 Query: 239 SSS 241 + Sbjct: 240 GKN 242 >UniRef50_D0LG91 Pseudouridine synthase n=3 Tax=Bacteria RepID=D0LG91_HALO1 Length = 553 Score = 133 bits (334), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 87/243 (35%), Positives = 138/243 (56%), Gaps = 13/243 (5%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEP 61 D ++RL +Y+S+ G+ +RR+A+ I G V +NG+R T +G +V PG D V V G+ + P Sbjct: 2 DEAIRLQRYLSQCGVAARRKAEELITSGVVSVNGQRVTELGTKVVPGRDRVSVRGEAVYP 61 Query: 62 REAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTNH 119 E+ + LNKP G ++ D E R ++++++ RV P+GRLD S+G++ LTN Sbjct: 62 ---EEPFYVLLNKPKGCLTAVTDPENRPTVMEYLHGLPARVVPVGRLDFYSEGVLLLTND 118 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPIL-GTVTKKCKV-----KKEA 173 GDL ++ + EK Y V V +TE + + GV + GTVT+ ++ K Sbjct: 119 GDLSARLQSPRHHVEKTYHVKVRDQVTERHLEVLRQGVRLEDGTVTRPAQIDMLGGTKSR 178 Query: 174 PFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF 233 ITL +G +RQI RM GY V KL+R ++ G+ +G+ R+LT E+ DL Sbjct: 179 HDWLVITLTEGKSRQIHRMLGVLGYTVMKLQRVAFGGLTFHGLRVGDARELTQAEVNDLR 238 Query: 234 KLI 236 +L+ Sbjct: 239 ELV 241 >UniRef50_B5YJH7 Pseudouridine synthase n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YJH7_THEYD Length = 237 Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 89/230 (38%), Positives = 130/230 (56%), Gaps = 11/230 (4%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKP-GDVVKVNGQL-IEPREAE 65 RL K +S+ GI SRR A+ I++G V +NG+ A IG + P D +KV+G+L I+P E Sbjct: 4 RLQKILSDYGIASRRHAEELIKEGRVTVNGQIAVIGQKADPEKDYIKVDGKLLIKP---E 60 Query: 66 DLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSK-RVFPIGRLDKDSQGLIFLTNHGDLV 123 V A KP +++ D + R I DF+ K R++P+GRLD DS+GL+ LTN G+L Sbjct: 61 PKVYYAFYKPRKVITALLDPQGRPTIRDFIKGIKFRIYPVGRLDFDSEGLLLLTNDGELA 120 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKV----KKEAPFVFRI 179 K++ + EK Y+V VD + E I + G+ I G + V K +A +I Sbjct: 121 YKVMHPSSQIEKTYMVKVDGIVEPETIEKLRKGIKIEGKLAVPVSVHLVKKLKANSWIKI 180 Query: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDEL 229 TL +G RQIR+M E G+ V +L R I V L + G+ R LT +E+ Sbjct: 181 TLHEGRKRQIRKMLERVGHPVIRLIRIAIDGVKLGDLKPGQLRPLTKEEI 230 >UniRef50_Q0BE12 Pseudouridine synthase, Rsu n=7 Tax=Burkholderia RepID=Q0BE12_BURCM Length = 690 Score = 132 bits (332), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 88/249 (35%), Positives = 132/249 (53%), Gaps = 29/249 (11%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKR-ATIGDQVKPGDVVKVNGQLIEPREAE 65 +RL+K +SE G+CSRREAD +IE+G V ++G+R T+G +V+P ++++ + + A+ Sbjct: 442 MRLSKRMSELGLCSRREADEWIEKGWVLVDGERIDTLGTKVRPDQKIEIDERASAAQAAQ 501 Query: 66 DLVLIALNKPVGIVS-TTEDG----------------ERDNIVDFVNHSKRVFPIGRLDK 108 V I L+KPVG VS EDG +R + H + P GRLD Sbjct: 502 --VTILLHKPVGYVSGQAEDGYEPASVLITRANQWSGDRSPLRFSPQHLHALAPAGRLDI 559 Query: 109 DSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTV---------DKPITEEFIRGMSAGVPI 159 DS G++ LT +G + +++ +D +KEYLV V D+ E + + G+ + Sbjct: 560 DSTGMLVLTQNGRIAKQLIGEQSDIDKEYLVRVRFGERLLDIDQHFPAESLAKLRHGLEL 619 Query: 160 LGTVTKKCKVKKEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLG 219 G K V + R L +G RQIRRMCE G EV L+R R+ V L +P G Sbjct: 620 DGVALKPAMVSWQNGEQLRFVLREGKKRQIRRMCELVGLEVIGLKRVRMGRVMLGALPQG 679 Query: 220 EWRDLTDDE 228 +WR L+ DE Sbjct: 680 QWRYLSPDE 688 >UniRef50_D1PIW4 Pseudouridine synthase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIW4_9FIRM Length = 237 Score = 131 bits (330), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 85/236 (36%), Positives = 127/236 (53%), Gaps = 9/236 (3%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGD-QVKPGDVVKVNGQLIEPREAE 65 +RL+KY+SE +R E+ + I +G V +NG D QV + V+G + + Sbjct: 2 MRLDKYLSERTGLTRSESRKAITKGRVAVNGMVCRKADTQVAEDAAIAVDGTPLAG-SYQ 60 Query: 66 DLVLIALNKPVGIVSTTEDGERDNIVDFVNHS---KRVFPIGRLDKDSQGLIFLTNHGDL 122 V I LNKP G+VS + D +VD V + +FP GRLDK S G + LT+ G L Sbjct: 61 KYVYIMLNKPEGVVSASRDKRDTTVVDLVAADFPRRALFPAGRLDKTSTGFVLLTDDGAL 120 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVT---KKCKVKKEAPFVFRI 179 + +L + +K+YLVT+D P+T+ G +AGV + T + + E P V ++ Sbjct: 121 AHDLLSPAHHVDKQYLVTLDTPLTDAMRAGFAAGVTLADGETMAPAEAEPAGEDPCVVKV 180 Query: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDELIDLFK 234 TL QG+ QI+RM +G V L R I V+L + + G+WR+LT +EL L K Sbjct: 181 TLHQGVYHQIKRMFGVYGAGVNALHRYAIGGVALDAALAPGQWRELTAEELALLQK 236 >UniRef50_A5FK52 Ribosomal large subunit pseudouridine synthase B n=3 Tax=Flavobacteriales RepID=A5FK52_FLAJ1 Length = 302 Score = 131 bits (330), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 82/233 (35%), Positives = 130/233 (55%), Gaps = 10/233 (4%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREAE 65 +RLNKYIS SG+CSRR+AD YI+ GNV +NG T +G VK DVV +G + P + E Sbjct: 70 IRLNKYISNSGVCSRRDADLYIQSGNVKVNGVPVTEMGYLVKLNDVVNFDGVTLTPEKKE 129 Query: 66 DLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHS--KRVFPIGRLDKDSQGLIFLTNHGDL 122 I LNKP + ++G E N+++ V + ++ PIGR+DK++ GL+ TN D+ Sbjct: 130 ---YILLNKPKNFTTALDEGQEYRNVLELVRAATNAKIAPIGRMDKNTTGLLLFTNDTDM 186 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILG---TVTKKCKVKKEAPFVFRI 179 + K K Y V++DK + E + +S G+ + G +V + ++KE + Sbjct: 187 IRKFSLPNQKSPKIYQVSLDKNLKFEDLEKISKGLVLDGHRVSVEEISYIEKEPKSEVGL 246 Query: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDL 232 L + +R + E+F Y V +++R ++ +P G WR LTD E+I+L Sbjct: 247 KLRSSNVKVVRAIFENFDYNVLRIDRVSFAGLTKKNLPRGNWRFLTDQEVINL 299 >UniRef50_B3E7C4 Pseudouridine synthase n=6 Tax=Desulfuromonadales RepID=B3E7C4_GEOLS Length = 274 Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 81/229 (35%), Positives = 131/229 (57%), Gaps = 10/229 (4%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEPREAE 65 RL K IS +GI SRR A+ I G V +NG+ T +G + P D++ ++GQ ++P AE Sbjct: 4 RLQKIISAAGITSRRAAEEMILAGRVTVNGQVVTELGSKADPAKDLIALDGQPVKP--AE 61 Query: 66 DLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTNHGDLV 123 + L+KP G V++ +D + R + + V +R+FP+GRLD +S+GL+ LTN G Sbjct: 62 TFYYVLLHKPAGYVTSLKDPQGRQLVTELVKDVGERLFPVGRLDYNSEGLLLLTNDGAWA 121 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI----LGTVTKKCKVKKEAPFVFRI 179 N+++ + +KEY V V I + I+ ++ GV + G T + ++ + Sbjct: 122 NRLMHPRHQVDKEYHVRVRGKIDPQQIKKLADGVELEDGPTGATTVRLLKNDQSNDWLSV 181 Query: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDE 228 T+ +G NRQ+RRMC G V +L R R N++L G+ GE+R L+ +E Sbjct: 182 TIREGRNRQVRRMCAAVGLFVVRLRRIRYGNLTLGGLQPGEYRLLSREE 230 >UniRef50_C7PP04 Pseudouridine synthase n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PP04_CHIPD Length = 516 Score = 131 bits (329), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 87/237 (36%), Positives = 135/237 (56%), Gaps = 23/237 (9%) Query: 9 LNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREAEDL 67 LNKYI+ SG+CSRR+A ++++G V +NG+ T +V D V +N + I ++ +L Sbjct: 282 LNKYIAHSGLCSRRKAVDFVKEGKVTVNGELITEPAFKVTAKDEVAINNRKINIQK--NL 339 Query: 68 VLIALNKPVGIVSTTEDGERDNIV-----DFVNHSKRVFPIGRLDKDSQGLIFLTNHGDL 122 V I LNKP G ++TT+D E V D +RV+P+GRLD+++ GL+ LTN G+L Sbjct: 340 VYILLNKPKGYITTTDDPEGRKTVMELIQDATTEEQRVYPVGRLDRNTSGLLLLTNDGEL 399 Query: 123 VNKILRAGNDHEKEYLVTVDKPIT----EEFIRGMS-----AGVPILGTVTKKCKVKKEA 173 K+ ++ +K Y V ++KP+T E ++G++ A V LG V K + Sbjct: 400 AQKLAHPKHNIKKIYHVGLNKPLTKAHFENILQGVTLEDGVANVDALGYVEAGDKTQ--- 456 Query: 174 PFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELI 230 I + G NR +RR+ EH YEV+KL+R ++ I G+WR LT+ E+I Sbjct: 457 ---VGIEIHSGKNRIVRRIFEHLEYEVEKLDRVTYAGLTKKNINRGKWRFLTEKEII 510 >UniRef50_C1DTU8 Pseudouridine synthase n=5 Tax=Bacteria RepID=C1DTU8_SULAA Length = 247 Score = 131 bits (329), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 83/233 (35%), Positives = 136/233 (58%), Gaps = 13/233 (5%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPG-DVVKVNGQLIEPREAE 65 RLNKYI++SGICSRR+AD I +G V +NGK +G ++ P DVV+V G++++P E + Sbjct: 3 RLNKYIAKSGICSRRKADELILEGKVKVNGKTVKNLGLKIDPKKDVVEVEGKIVKPTEKK 62 Query: 66 DLVLIALNKPVGIVSTTEDGE--RDNIVDFVNHSK---RVFPIGRLDKDSQGLIFLTNHG 120 + +A+ KPVG +S R + DF+N K ++FP+GRLD +S+GL+ LTN G Sbjct: 63 --IYLAIYKPVGYLSAVGKDRFGRKTLTDFLNELKIPYKLFPVGRLDYNSEGLLILTNDG 120 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK----KEAPFV 176 + NK+ N+ +K Y V V +++E ++ M G + K K+K +E Sbjct: 121 EFANKVAHPRNEIKKVYKVKVAGEVSQETLKKMEEGTILEDGFFKPDKIKMLKREEDGTW 180 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDEL 229 + + G R IRR + FG+ VK+L R +I ++ + + ++R L++ E+ Sbjct: 181 LLVEIHSGKKRIIRRFMDSFGHRVKRLIRVKIGSIDIGNLKPFDYRYLSEKEI 233 >UniRef50_A1S9T3 Pseudouridine synthase n=1 Tax=Shewanella amazonensis SB2B RepID=A1S9T3_SHEAM Length = 254 Score = 131 bits (329), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 82/241 (34%), Positives = 129/241 (53%), Gaps = 12/241 (4%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAED 66 RL KY++E+G+ SRR A R IE G V ++G++A+ D+V + V V+G + P +A+ Sbjct: 10 TRLCKYLAEAGVASRRGASRLIETGRVCIDGQQASHSDRVFDSNRVTVDGAPLCPAQAKA 69 Query: 67 LVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNKI 126 L +KPVGI + +++ + R+FP GRLDKDS+GL+ LTN G+L ++ Sbjct: 70 YFLY--HKPVGIDCRLRAEDPHSLIHCLPGDLRLFPAGRLDKDSRGLLLLTNDGELTQRL 127 Query: 127 LRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA----------PFV 176 + H+K YL+T++K + I ++AG T+ C V+ P Sbjct: 128 MHPDFHHQKGYLITLNKAPQPDDIAAIAAGFDYGEGPTRPCVVEAAIDCGYATEDGNPRK 187 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLI 236 R+ L +G RQIRR+ GY V L R I +++ + GE R LT EL L + + Sbjct: 188 LRMRLTEGKKRQIRRLWRARGYRVLDLLRESIQQLNIGKLEQGEIRSLTASELRQLKRTL 247 Query: 237 E 237 + Sbjct: 248 D 248 >UniRef50_A3HY40 Pseudouridine synthase n=1 Tax=Algoriphagus sp. PR1 RepID=A3HY40_9SPHI Length = 434 Score = 131 bits (329), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 88/235 (37%), Positives = 132/235 (56%), Gaps = 9/235 (3%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPR 62 D+ RLNKYI+ SGICSRREAD I +G V +NGK T +G +V D V G+ I P Sbjct: 199 DTLFRLNKYIANSGICSRREADDLIAKGLVSVNGKVVTELGLKVSKFDRVVYQGKKINP- 257 Query: 63 EAEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHS--KRVFPIGRLDKDSQGLIFLTNH 119 E V + LNKP ++TT+D ER ++ V ++ +R+FP+GRLD+++ GL+ TN Sbjct: 258 --EKPVYVLLNKPKDFITTTDDPLERKTVMALVGNACEERIFPVGRLDRNTTGLLLFTND 315 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPIL-GTV-TKKCKVKKEAPFVF 177 G+L K+ N +K Y VT+DKP+T + + G+ + G V +V + Sbjct: 316 GELAAKLSHPSNQIKKIYQVTLDKPLTHNDEKDILEGLTLEDGEVEVDDMQVLSVDRKIL 375 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDL 232 + + G NR +RR+ H GYEV L+R + + G +R L++ E+I L Sbjct: 376 GLEIHVGKNRIVRRIFAHLGYEVTALDRVMYAGLDKKDLKRGNYRFLSEQEVIKL 430 >UniRef50_Q2S2G3 Pseudouridine synthase n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S2G3_SALRD Length = 249 Score = 130 bits (328), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 78/240 (32%), Positives = 136/240 (56%), Gaps = 12/240 (5%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEPREAE 65 +R+NKYI+ +G+CSRR+AD +EQG V ++G+R G V+ G V V+G+ + P E E Sbjct: 11 MRINKYIAHAGVCSRRDADDLVEQGRVHIDGERVDQHGTCVREGQTVTVDGEEVYPLEFE 70 Query: 66 DLVLIALNKPVGIVSTTED-GERDNIVDFV----NHSKRVFPIGRLDKDSQGLIFLTNHG 120 L+L NKP +STT+D +R ++D + ++ +FP+GRLD+++ G++ ++N G Sbjct: 71 YLLL---NKPKDTISTTDDPKDRRTVLDAIGVPEDNPSGLFPVGRLDRNTTGVLLVSNDG 127 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAP---FVF 177 DL ++++ + K Y V V + + + GV + +V P Sbjct: 128 DLAHRLMHPRYEIPKIYYVRVQDDVKPHQLDQLKRGVELSDGAAAADQVAYLDPQRKTDI 187 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIE 237 + L +G NRQIRRM E G+ + +LER + ++ + GEWR L +E+ +L++ ++ Sbjct: 188 ALELHEGRNRQIRRMMEALGHTIVQLERAKYATLTTGRLQRGEWRRLEPEEVRELYQRVD 247 >UniRef50_Q1J0B9 Pseudouridine synthase n=5 Tax=Deinococci RepID=Q1J0B9_DEIGD Length = 253 Score = 130 bits (328), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 82/229 (35%), Positives = 123/229 (53%), Gaps = 5/229 (2%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAEDL 67 RL K ++ +G+ SRR A+ I G V +NG+ AT+G V P D V+V+G+LIE A++ Sbjct: 7 RLQKRLARAGVASRRAAEDLITAGRVTVNGQIATLGRTVMPDDEVRVDGRLIEA-PAQES 65 Query: 68 VLIALNKPVGIVSTTEDGE-RDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNKI 126 V L KP G V+T D R N++ + + P+GRLDKDS+GL+ LT G L + Sbjct: 66 VTFLLYKPAGYVTTARDEYGRRNVLSAMPPIPGLHPVGRLDKDSEGLLLLTTDGQLTLTL 125 Query: 127 LRAGNDHEKEY-LVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQGL 185 HEK Y T +P+ E +R + G+ + + + +TL +G Sbjct: 126 THPRYGHEKAYRAWTAGQPVAAE-LRVLETGIELADGPARALSARPARGGAL-VTLTEGR 183 Query: 186 NRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFK 234 NRQ+RRM + GY V +L R R+ + L + GE+R L+ +L DL Sbjct: 184 NRQVRRMLDAIGYPVHRLLRYRVGGLWLGDLEPGEYRLLSPRDLHDLLH 232 >UniRef50_C6XB83 RNA-binding S4 domain protein n=2 Tax=Methylophilaceae RepID=C6XB83_METSD Length = 455 Score = 130 bits (327), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 90/239 (37%), Positives = 131/239 (54%), Gaps = 28/239 (11%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEPREAE- 65 RL+K ++E G+CSRREAD +I G V +NG+ +G +V+P ++V+ +EAE Sbjct: 217 RLSKRMAELGLCSRREADEWIVNGWVRVNGQVVDELGSRVEPDANIEVS------KEAEK 270 Query: 66 ---DLVLIALNKPVGIVS-TTEDGERDNIV----------DFVNHSKR------VFPIGR 105 ++V I L+KPVG VS EDG +V D V R + P GR Sbjct: 271 HQSEIVTILLHKPVGYVSGQAEDGYEPAVVLVHPDNHWAEDPVQKEFRRGFLKGLAPAGR 330 Query: 106 LDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTK 165 LD DS GL+ LT G + +++ + EKEYLV V+ +++E +R ++ G+ + G K Sbjct: 331 LDIDSTGLLVLTQDGRVARQLIGEDSQTEKEYLVRVEGTLSDEGLRKLNHGLSLDGVQLK 390 Query: 166 KCKVKKEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDL 224 KV + R L +G RQIRRMCE G V L+R RI +V+L +P G+WR L Sbjct: 391 PAKVSWQNEDQLRFVLREGRKRQIRRMCELVGLHVVGLKRVRIGSVALGKLPPGQWRYL 449 >UniRef50_C7RHU0 Pseudouridine synthase n=3 Tax=Anaerococcus RepID=C7RHU0_ANAPD Length = 233 Score = 130 bits (326), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 79/228 (34%), Positives = 131/228 (57%), Gaps = 8/228 (3%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEPREAE 65 +R+NKYI+ SG SRR+AD +++G V +NG+ +G +K DVV+++G+++E E Sbjct: 1 MRINKYIASSGYTSRRKADDLVKKGKVKVNGETTHELGLDIKDSDVVEIDGKVLE---IE 57 Query: 66 DLVLIALNKPVGIVSTTEDGERD-NIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVN 124 + + I L KP G +++ D D ++ D V +R F GRLDKDS+GL+ +TN G N Sbjct: 58 EKIYIKLYKPRGYITSNFDPYNDRDLNDLVKLDQRFFAAGRLDKDSEGLLIITNDGIFTN 117 Query: 125 KILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILG---TVTKKCKVKKEAPFVFRITL 181 +I+ +K Y+V V + + +E + +G+ I T + ++ + +++T+ Sbjct: 118 QIIHPSKKLDKTYIVRVSRLLNKEECQQFESGIDIGDSEMTSDSRIELIDKTSKTYKVTI 177 Query: 182 VQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDEL 229 QG NRQIRRM +F EVK L+R I + L G+ E R+ E+ Sbjct: 178 HQGYNRQIRRMFAYFSSEVKMLKRISIGPIKLDGMKPYEKRNFDQAEM 225 >UniRef50_Q3MC44 Pseudouridine synthase n=21 Tax=Cyanobacteria RepID=Q3MC44_ANAVT Length = 288 Score = 130 bits (326), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 89/246 (36%), Positives = 127/246 (51%), Gaps = 15/246 (6%) Query: 2 LPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPG-DVVKVNGQLIE 60 L + RL K +++ GI SRREA+ I + V +NG A +G +V P D++ V+G+ + Sbjct: 24 LSNMEARLQKVLAQWGIASRREAEEMIRRSRVQINGTLAELGQKVNPERDIITVDGKSVS 83 Query: 61 PREAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSKR----VFPIGRLDKDSQGLIF 115 + L + LNKP G+VST D + R ++D + R + P+GRLD S G + Sbjct: 84 AQRHHRLTYLLLNKPTGVVSTCYDPQGRKTVLDLLPEELRKGSGLHPVGRLDAYSTGALI 143 Query: 116 LTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPF 175 LTN GDL K+ ++ K Y + V E ++ GV + G T+K KV Sbjct: 144 LTNDGDLTFKLTHPSHNIPKTYQILVKGHPPEAVLKMWREGVLLDGRKTRKAKVSLLESL 203 Query: 176 V----FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL--SGIPL---GEWRDLTD 226 I L +G NRQIRR+ E GY V KL RT I ++ L S PL G +R L D Sbjct: 204 AEKSRLEIVLQEGRNRQIRRVAEQLGYPVIKLHRTAIGSIQLQTSKQPLLRAGNYRILRD 263 Query: 227 DELIDL 232 DE+ L Sbjct: 264 DEIRSL 269 >UniRef50_B1ZYG8 Pseudouridine synthase n=3 Tax=Verrucomicrobia RepID=B1ZYG8_OPITP Length = 266 Score = 130 bits (326), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 85/257 (33%), Positives = 137/257 (53%), Gaps = 18/257 (7%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPG-DVVKVNGQLIEPREAE 65 +RL KY++++G+CSRR A+ I G V++NG A +G +V PG D V G+ + A+ Sbjct: 7 IRLQKYLADAGVCSRRAAEALIASGEVWVNGAPAQVGQKVTPGVDRVTTGGKPVR-TTAQ 65 Query: 66 DLVLIALNKPVGIVSTTEDGERDNIVDFVNHSK----RVFPIGRLDKDSQGLIFLTNHGD 121 V +A++KP G+V T ED + V + R F GRLDKDS+GL+ LT GD Sbjct: 66 PRVTLAMHKPRGLVCTNEDPHNPETIFSVLPREFAKLRFFCAGRLDKDSEGLVILTTDGD 125 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA---PFV-- 176 L ++++ N K Y VT++KP + + + GV G ++ KV++ A P V Sbjct: 126 LAHRLMHPSNLVVKRYHVTLEKPFPAKRLPLLVKGVIAQG---ERLKVERAALINPSVSH 182 Query: 177 ----FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDL 232 + + G R+IR + GY VK+L R +I L GIPL + ++ E+ L Sbjct: 183 EATNLDVHMHHGKKREIRLLFTELGYPVKRLRRYQIGGFRLKGIPLRAMKKMSPAEIESL 242 Query: 233 FKLIENSSSEVKPKAKA 249 F++ + ++ A++ Sbjct: 243 FRVPRTPHAAIEVTAES 259 >UniRef50_C0BLA3 Pseudouridine synthase n=1 Tax=Flavobacteria bacterium MS024-3C RepID=C0BLA3_9BACT Length = 334 Score = 130 bits (326), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 82/243 (33%), Positives = 133/243 (54%), Gaps = 15/243 (6%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPR 62 D+S+RLN+YIS SG+CSRREAD +I G++ +NGK +G +V DVV +G ++ P Sbjct: 98 DNSIRLNRYISNSGVCSRREADIFIAAGSIKVNGKAVVEMGYKVALSDVVSFDGVVLNP- 156 Query: 63 EAEDLVLIALNKPVGIVSTTEDGE--RDNIVDFVNHSK-RVFPIGRLDKDSQGLIFLTNH 119 E I LNKP S+ D + + N +K ++ P+GRLDK + GL+ TN Sbjct: 157 --EKRAYILLNKPKDFDSSATDASQPKSALGLVANATKSKIKPVGRLDKSASGLLLFTND 214 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGV-----PILGTVTKKCKVKKEAP 174 G+L K+ + N K Y T+ K + + + + G+ P+ V + ++ Sbjct: 215 GELQTKLTKPKNGFRKIYHATLSKSLKADDLEKVRKGIVLEDGPV--RVHEISNIEGSPA 272 Query: 175 FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFK 234 I ++ N I+R+ +H GYE+ KL+R ++ +P G+WR LT+ E+I+L K Sbjct: 273 TEVGIEILSAKNNIIKRLFDHLGYELIKLDRVVYAGLTKKDLPRGQWRTLTEQEIINL-K 331 Query: 235 LIE 237 +I+ Sbjct: 332 MIQ 334 >UniRef50_B0B8U9 Pseudouridine synthase n=10 Tax=Chlamydiales RepID=B0B8U9_CHLT2 Length = 241 Score = 129 bits (325), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 82/231 (35%), Positives = 134/231 (58%), Gaps = 10/231 (4%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQV---KPGDVVKVNGQLIEP 61 + VRLNK+++ +G+ SRR+ D I G+V +NG+ AT G V + D V+V GQ I Sbjct: 2 AKVRLNKFLASAGVASRRKCDEIIFAGSVTVNGRVAT-GPFVTVDEEFDSVEVGGQRIG- 59 Query: 62 REAEDLVLIALNKPVGIVSTTEDGERDN--IVDFVNHS-KRVFPIGRLDKDSQGLIFLTN 118 AE V ++KP+G + ++E + ++D ++H R+F +GRLDK++ GLI +TN Sbjct: 60 --AEKKVYFMVHKPLGYLCSSERKFPGSKLVIDLLSHCPYRLFTVGRLDKETSGLILVTN 117 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFR 178 G+ N+++ KEYL+ V + +T + + AG I G V + VKK + Sbjct: 118 DGEFANRVIHPSFGITKEYLLKVSRDVTARDLETLMAGTVIDGKVVRPVSVKKVRRGTIK 177 Query: 179 ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDEL 229 I + +G +IR E G ++ +L+R RI ++ L G+P G++R+LTD EL Sbjct: 178 IIVNEGKKHEIRLFAEAAGLQLLELKRIRIGSLVLGGLPYGKYRELTDSEL 228 >UniRef50_A1K3P0 Pseudouridylate synthase n=3 Tax=Betaproteobacteria RepID=A1K3P0_AZOSB Length = 500 Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 92/244 (37%), Positives = 132/244 (54%), Gaps = 21/244 (8%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPRE 63 S VRL+K +++ GICSRREAD IE+G VF++G+R + +G ++ P V + E ++ Sbjct: 260 SGVRLSKVMADRGICSRREADELIERGWVFVDGRRVSELGTRIDPDARVVL---APEAKK 316 Query: 64 AE-DLVLIALNKPVGIVS-TTEDGER--------DNIVD-------FVNHSKRVFPIGRL 106 A+ V I L+KPVG VS E G DN D + K + P GRL Sbjct: 317 AQAQRVTILLHKPVGYVSGQPEPGYEPAVTLIGGDNQFDRDVAQRFHPSQLKGLAPAGRL 376 Query: 107 DKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKK 166 D DS GL+ LT G + +++ + EKEYLV V+ + ++ + ++ G+ + + Sbjct: 377 DIDSTGLLVLTQDGRIARQLIGDDSKVEKEYLVRVEGELVDDGLALLNHGLSLDDKPLRP 436 Query: 167 CKVKKEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTD 226 KV+ R L +G RQIRRMCE G V L+R RI V L +PLGEWR L D Sbjct: 437 AKVEWINEDQLRFVLKEGRKRQIRRMCELVGLRVVGLKRVRIGRVKLGDLPLGEWRYLRD 496 Query: 227 DELI 230 DE+ Sbjct: 497 DEVF 500 >UniRef50_B1C6T1 Pseudouridine synthase n=2 Tax=Clostridiales RepID=B1C6T1_9FIRM Length = 238 Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 84/240 (35%), Positives = 134/240 (55%), Gaps = 12/240 (5%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVK-PGDVVKVNGQLIEP 61 + +R+NKY++ G+ SRR+ + I +G V +NG+ +G + D+VKV G+ + Sbjct: 2 EEKMRINKYLASCGVASRRKCEEIISRGKVTVNGEVVRELGTIINVEKDLVKVYGKEVSL 61 Query: 62 REAEDLVLIALNKPVGIVSTTED--GERDNIVDFVNHSK-RVFPIGRLDKDSQGLIFLTN 118 + V LNKP G++S ++ GE + +VD + + R+FP+GRLDKD+ GLI LTN Sbjct: 62 DTKK--VYYMLNKPQGVISASKSKYGE-ETVVDLLGKKEHRLFPVGRLDKDTTGLIILTN 118 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPF--- 175 GD K+ + EK Y V + + + + GV I G T + KV+ Sbjct: 119 DGDFAYKLTHPKYEKEKTYEALVKGKVDSKSLDKLKQGVVIDGKKTSRAKVRLVKMIGVN 178 Query: 176 -VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFK 234 + ITL++G RQ+++MCE G++V KL RT +SL + +GE+R LT +E+ L K Sbjct: 179 SLVEITLIEGRKRQVKKMCEKVGHKVIKLNRTMENGLSLGDLEIGEYRKLTKNEVSKLLK 238 >UniRef50_C8PSZ6 Ribosomal large subunit pseudouridine synthase B n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PSZ6_9SPIO Length = 252 Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 84/233 (36%), Positives = 120/233 (51%), Gaps = 6/233 (2%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREAE 65 +RL Y++ +G+ SRR ++ IE+G V +NG T +G +V GD V +G+ + P + Sbjct: 15 MRLQVYLAHAGVASRRACEKIIEEGRVSVNGTVVTGMGSKVCAGDTVLFDGKPVHPEARK 74 Query: 66 DLVLIALNKPVGIVSTTEDGE-RDNIVDFVN--HSKRVFPIGRLDKDSQGLIFLTNHGDL 122 VL LNKP G V T D + R D + +S+R++ IGRLD S G I TN GD Sbjct: 75 CYVL--LNKPAGFVCTLSDEKGRPTAADLLKEAYSERLYNIGRLDMFSSGAILFTNDGDF 132 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLV 182 KI EKEY++ + E + G+ + G K RI LV Sbjct: 133 AAKIEHPSAQIEKEYVIETTQDFPPELLTRFERGIRVDGIFYKCRSAAAVNRRKLRIVLV 192 Query: 183 QGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 +G NR+IRR+ + F +K+L R RI N+ L + GE+RDLT E L L Sbjct: 193 EGKNREIRRVLDSFNCTIKRLVRVRIGNLELGTLKAGEFRDLTVQERQALLGL 245 >UniRef50_C8WXC0 Pseudouridine synthase n=3 Tax=Firmicutes RepID=C8WXC0_ALIAD Length = 273 Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 83/238 (34%), Positives = 127/238 (53%), Gaps = 14/238 (5%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEPREAE 65 RL K ++ +G+ SRR+ + I G V ++G+ T +G +V P + V+G P E E Sbjct: 3 RLQKVLAHAGVASRRKCEELILAGRVSVDGEIVTQLGAKVDPSRQRIAVDGV---PIELE 59 Query: 66 DLVLIALNKPVGIVSTTED--GERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLV 123 V++ LNKPV +ST D G R + +RV+P+GRLD D+ GL+ TN G+L Sbjct: 60 QPVVLVLNKPVAYLSTVSDPLGRRTVMQLLPPIRERVYPVGRLDYDTSGLLLFTNDGELT 119 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKV-------KKEAPFV 176 ++L + EK Y V+V + E R + GV + VT KV +++ V Sbjct: 120 QRLLHPSREIEKVYRVSVRGIVDRETRRALMEGVELEDGVTAPAKVEVLRQADREDGVAV 179 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFK 234 + + +G NRQ+RRM E G V +L+R VSL + GEWR LT +E + L++ Sbjct: 180 VHLAIHEGRNRQVRRMFERLGLPVLRLKRIAFGPVSLGHLKTGEWRALTQEEWVALYQ 237 >UniRef50_Q1MQ05 Pseudouridine synthase n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MQ05_LAWIP Length = 270 Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 78/239 (32%), Positives = 138/239 (57%), Gaps = 14/239 (5%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATI-GDQVKPG-DVVKVNGQLIEPR 62 +S+R+NK ++ +G+CSRR D+YI G V +NGK T G + P D++ ++G+ ++ + Sbjct: 22 TSIRINKALANAGVCSRRNVDKYILNGEVTINGKSVTQPGIYIHPDKDIIALHGRRVDIQ 81 Query: 63 -EAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH---SKRVFPIGRLDKDSQGLIFLT 117 + + +++ KP+ ++S+ +D + R ++DF+ + R++P+GRLD S+GL+ +T Sbjct: 82 LKNKKYYYLSMYKPIKVISSVKDPQNRLTVLDFIPFPWKNYRLYPVGRLDFFSEGLLLIT 141 Query: 118 NHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPIL-GTVTKKCKVKKEAPFV 176 N G+L ++ K Y V + + I ++ +S G+ + GT KV+ + Sbjct: 142 NDGELTQRLTHPRYHISKVYHVLIRERILNTTLKNISKGITLSDGTKLPPAKVRVLSSIT 201 Query: 177 ------FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDEL 229 ITL QG+NRQIRRMC+ G + KL R + N++LS + GE R L +DE+ Sbjct: 202 ETNTTWLEITLQQGINRQIRRMCKELGLTILKLIRVKQGNINLSNLQPGEVRPLKNDEI 260 >UniRef50_C6BUF1 RNA-binding S4 domain protein n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BUF1_DESAD Length = 251 Score = 128 bits (321), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 86/246 (34%), Positives = 138/246 (56%), Gaps = 12/246 (4%) Query: 1 MLPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKP-GDVVKVNGQL 58 M +++RLNKYI+ +GI SRR AD +++G V +NG+ A + G QV P D V+VNG+L Sbjct: 1 MTEKTTIRLNKYIASAGIASRRGADELVQKGKVKVNGELADSPGIQVDPDNDRVEVNGKL 60 Query: 59 IEPREAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH---SKRVFPIGRLDKDSQGLI 114 ++ E + I L+K + V+T +D + R ++D + ++RVFP+GRLD S+G++ Sbjct: 61 VQHDEKSKDLYILLHKTIETVTTAKDPQGRKTVLDLLPPDVINRRVFPVGRLDFYSEGML 120 Query: 115 FLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGV------PILGTVTKKCK 168 LT G+L N++ K Y VT+ ++E+ + M G+ +L V K Sbjct: 121 LLTTDGELCNRMTHPKWHLPKIYHVTIRGKLSEKELSVMQNGMYLEDKGELLAPVKIKAI 180 Query: 169 VKKEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDE 228 + + + L QG+NRQIRRM F + +L+R R + L + G+WR+L+ E Sbjct: 181 SEVGETTKYEMELRQGINRQIRRMFGEFDKTILRLKRVRQGRIELGALKPGKWRELSAKE 240 Query: 229 LIDLFK 234 L L K Sbjct: 241 LTLLKK 246 >UniRef50_UPI000196BAD7 hypothetical protein CATMIT_00510 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196BAD7 Length = 247 Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 83/231 (35%), Positives = 127/231 (54%), Gaps = 12/231 (5%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRATI-GDQVKPGDVVKVNGQLIEPREAED 66 RL K I++SG SRR+A+ I+QG V +NG+ T+ G +V D + VNG+LI ED Sbjct: 4 RLQKVIAQSGYTSRRKAEELIQQGKVTVNGEVVTVLGTKVTKKDTICVNGKLIN---KED 60 Query: 67 LVLIALNKPVGIVSTTED-GERDNIVD-FVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVN 124 V KP V T D +R + D F + ++RV+P+GRLD D+ G +F+TN G+ N Sbjct: 61 KVYYLFYKPEKCVCTMSDEHDRTCVADYFADSNERVYPVGRLDYDTTGALFMTNDGEFAN 120 Query: 125 KILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKV------KKEAPFVFR 178 I+ + EK Y V+V +T+ + G+ + G T C++ ++ + Sbjct: 121 LIMHPSSHLEKVYEVSVKGLLTKAEKNQLEKGIYLEGVKTLPCEIAITGNDEEHGTTMLL 180 Query: 179 ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDEL 229 I LV+G NRQI++M E G+ VK+L R I + L G+ G +R L E+ Sbjct: 181 IRLVEGKNRQIKKMFEEVGHPVKRLRRIMIGPIDLKGLTPGTYRRLKPHEV 231 >UniRef50_UPI00016C3D27 ribosomal large subunit pseudouridine synthase B n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3D27 Length = 271 Score = 127 bits (320), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 85/245 (34%), Positives = 132/245 (53%), Gaps = 13/245 (5%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKP-GDVVKVNGQLIEPREAE 65 RLNKY++ +G+ SRR D+ I G V +NG + T +G ++ P + V+ Q P AE Sbjct: 3 RLNKYLAHAGVGSRRHCDKLISAGRVKVNGVKVTELGLKIDPSAHQIAVDDQ---PVRAE 59 Query: 66 DLVLIALNKPVGIVSTTED-GERDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTNHGDLV 123 LV A+NKPVG + T D R VD + H +RV+ +GRLD+ S GL+ +TN GDL Sbjct: 60 KLVYWAVNKPVGHLCTNHDPAGRPRAVDLLPHVEQRVYTVGRLDEGSDGLLLMTNDGDLA 119 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGV-----PILGTVTKKCKVKKEAPFVFR 178 + K Y V V T++ ++ + GV + K+ K + +V R Sbjct: 120 QGLTHPRYGVPKMYFVLVAGRPTDDDLQKLMDGVWLSDGKVRAKSAKRIKAQGNGTWV-R 178 Query: 179 ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIEN 238 + L +G NR+IRRM FG++V +L+R I V L +P G+ R ++D+EL L + Sbjct: 179 VVLTEGKNREIRRMLAKFGHKVMRLKRVAIGPVKLDKLPKGKARRISDEELKALKAFVTR 238 Query: 239 SSSEV 243 + ++ Sbjct: 239 ARQKI 243 >UniRef50_Q688C2 Pseudouridine synthase n=1 Tax=Mycoplasma mobile RepID=Q688C2_MYCMO Length = 235 Score = 127 bits (318), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 80/234 (34%), Positives = 130/234 (55%), Gaps = 5/234 (2%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAED 66 +R+ K IS++GI SRR A+ I + V +NG A IGD+ DV+ V+ ++I E Sbjct: 4 IRIQKLISQAGISSRRAAEDLILKKRVKINGVIAKIGDKASLEDVILVDEKVISKEEK-- 61 Query: 67 LVLIALNKPVGIVSTTEDG-ERDNIVDFVNHSK-RVFPIGRLDKDSQGLIFLTNHGDLVN 124 V LNKP +V+T +D R I DF++ K ++FP+GRLD D+ G+I LTN G+ N Sbjct: 62 -VYYLLNKPKNVVTTLKDNFNRSIITDFIDEKKYKIFPVGRLDYDTTGIIILTNDGETAN 120 Query: 125 KILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQG 184 K+L + + Y V +DK ++ E I+ +++ L + +V K + + ++I L QG Sbjct: 121 KLLHPKYEIPRIYEVIIDKELSLEEIKYLNSQEVFLNSKKSFQEVSKISNYKYKIKLHQG 180 Query: 185 LNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIEN 238 I+++ E G +VK L RT +L + +G +R L E+ L ++N Sbjct: 181 SYHHIKKLFEIVGKKVKDLNRTEYAFFNLENLSIGNYRKLNKHEIDRLLNFVKN 234 >UniRef50_D0U645 Pseudouridine synthase n=1 Tax=uncultured actinobacterium RepID=D0U645_9ACTN Length = 237 Score = 126 bits (317), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 87/237 (36%), Positives = 132/237 (55%), Gaps = 6/237 (2%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKP-GDVVKVNGQLIEPR 62 + +RLNK I+++GI SRR AD IE G V +NG +G + P D V V+G+ I Sbjct: 2 AQMRLNKIIADAGITSRRGADELIEDGRVAVNGIIVREMGSKFDPEMDKVMVDGETITRT 61 Query: 63 EAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSK-RVFPIGRLDKDSQGLIFLTNHG 120 + +AL+KP G++ST D E R ++ DF++ K R+F +GRLDKDS+GLI LTN G Sbjct: 62 LTKSY--LALHKPKGVLSTMFDPEGRPSLDDFIDLRKERLFHVGRLDKDSEGLILLTNDG 119 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRIT 180 DL + EK Y++ D + + + GV + + + K+ +P ++ Sbjct: 120 DLTFRATHPSFGLEKTYIIEFDGILPTGVDKVLLKGVELEDGMGRVLTFKQLSPKWIEVS 179 Query: 181 LVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIE 237 + +G IRR+ E G V +L RT+ +SL P G WRDL D EL++L K ++ Sbjct: 180 IHEGRYHIIRRLMEAVGVNVLRLIRTKFGPISLGDTPEGRWRDLNDGELMNLRKALD 236 >UniRef50_C7GZ55 Pseudouridine synthase n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZ55_9FIRM Length = 250 Score = 126 bits (316), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 91/252 (36%), Positives = 132/252 (52%), Gaps = 25/252 (9%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNG-KRATIGDQVKPGDVVKVNGQLIEPREAE 65 +R+NKYI++ GICSRR+AD I++G V + G G V V+ ++G+ IE ++ Sbjct: 1 MRINKYIAKCGICSRRKADELIKEGRVTVGGIPLLECGVNVDEDAVIAIDGRPIEIQKKT 60 Query: 66 DLVLIALNKPVGIVSTTED--GERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLV 123 V IA+NKP G V T D G R + +R+F IGRLDKDS+GLI LTN GDL Sbjct: 61 --VYIAMNKPCGYVCTVSDELGRRTVYDLLTDIDERLFTIGRLDKDSEGLILLTNDGDLA 118 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGV-------------PILGTV---TKKC 167 K+L EK Y V V I+ +S G+ P+ V TK Sbjct: 119 QKLLSPKRKIEKNYEVVVRGVPGANDIKKLSGGITIDVEISQTKQNKPVKSIVKYHTKPA 178 Query: 168 KV----KKEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRD 223 K+ +K+ + + +G RQIR+M + G+EV KL+R + + L + GE+R Sbjct: 179 KIFEIGQKQGDMKLSMIIKEGKKRQIRKMFDVIGHEVIKLKRVKFAGIELGDLRPGEFRH 238 Query: 224 LTDDELIDLFKL 235 L++DE+ L L Sbjct: 239 LSEDEVRSLCSL 250 >UniRef50_A5IKF7 Pseudouridine synthase n=5 Tax=Thermotogaceae RepID=A5IKF7_THEP1 Length = 239 Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 78/231 (33%), Positives = 134/231 (58%), Gaps = 6/231 (2%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREAE 65 +RL++Y+S SG+ +R+E + I+QG V +NG+ G V DVV ++G+ + Sbjct: 1 MRLDRYLSNSGVGTRKEVKKLIKQGRVTVNGRVVLDPGHSVSENDVVVLDGETVNFHRK- 59 Query: 66 DLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNK 125 V I +KP G V++T+D + I++F+ K +FP+GRLDKD++GL+ +T+ GD ++ Sbjct: 60 --VYILFHKPSGYVTSTKDPHSETIMEFLPPLKGIFPVGRLDKDAEGLLIITSDGDFAHR 117 Query: 126 ILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCK-VKKEAPFVFRITLVQG 184 ++ EKEY+V V+ +TE+ I + GV + K K V+K + +I + +G Sbjct: 118 VISPKWSVEKEYIVKVEGEVTEDKIEKLKNGVTLRDGFFAKAKCVEKLSNDTLKIVITEG 177 Query: 185 LNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDELIDLFK 234 QI+RM G L+RTRI + L + GE+R L+++E+ +F+ Sbjct: 178 KYHQIKRMTVAVGLRTVHLKRTRIGRLVLPEDMKPGEYRFLSEEEVKKVFE 228 >UniRef50_A0K8E6 Pseudouridine synthase, Rsu n=38 Tax=Burkholderia RepID=A0K8E6_BURCH Length = 669 Score = 125 bits (315), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 89/251 (35%), Positives = 130/251 (51%), Gaps = 29/251 (11%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKR-ATIGDQVKPGDVVKVNGQLIEPREAE 65 +RL+K +SE G+CSRREAD +IE+G V ++G R T+G +V+ ++++ + + A+ Sbjct: 421 MRLSKRMSELGMCSRREADEWIEKGWVLVDGARIDTLGTKVRADQKIEIDERASAAQAAQ 480 Query: 66 DLVLIALNKPVGIVS-TTEDGERDNIVDFV-------NHSKRVF---------PIGRLDK 108 V I L+KPVG VS EDG V +HS F P GRLD Sbjct: 481 --VTILLHKPVGYVSGQAEDGYEPAAVLITRANRWSGDHSPVRFSPQHLHALAPAGRLDI 538 Query: 109 DSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTV---------DKPITEEFIRGMSAGVPI 159 DS GL+ LT +G + +++ +D +KEYLV V D+ E + + G+ + Sbjct: 539 DSTGLLVLTQNGVIAKQLIGEQSDIDKEYLVRVRFGERLIDIDQHFPAESLAKLRHGLEL 598 Query: 160 LGTVTKKCKVKKEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLG 219 G K V + R L +G RQIRRMCE G +V L+R R+ V L +P G Sbjct: 599 DGVALKPALVSWQNGEQLRFVLREGKKRQIRRMCELVGLDVIGLKRVRMGRVMLGALPQG 658 Query: 220 EWRDLTDDELI 230 +WR L+ DE Sbjct: 659 QWRYLSADETF 669 >UniRef50_A0M7H0 Ribosomal large subunit pseudouridine synthase F n=4 Tax=Flavobacteriales RepID=A0M7H0_GRAFK Length = 295 Score = 125 bits (315), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 84/234 (35%), Positives = 131/234 (55%), Gaps = 12/234 (5%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREAE 65 +RLNKYI+ SG+CSRR+AD YI GNV +NGK T +G +VK D V+ +G+ + P + E Sbjct: 63 IRLNKYIANSGVCSRRDADMYIAAGNVTVNGKSITEMGYRVKLEDDVRFDGRRLNPEKPE 122 Query: 66 DLVLIALNKPVGIVST--TEDGERDNIVDFV--NHSKRVFPIGRLDKDSQGLIFLTNHGD 121 I LNKP G T E G + +++ V S +V P+G+LD ++GL+ TN G Sbjct: 123 ---YILLNKPAGFFVTGNPEKGGK-TVMELVARTTSAKVSPVGKLDNQAKGLLLFTNDGT 178 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGT---VTKKCKVKKEAPFVFR 178 L K+ + N + Y VT++K +T+E + G+ GV I G+ +T ++ + Sbjct: 179 LAKKLAKPKNGIRQIYQVTLNKNLTKEDLEGIEKGVYIEGSKVLITSISFIEDKPHNEVG 238 Query: 179 ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDL 232 I L + R+ + GYEV+ L+R ++ +P G R+LT E+I+L Sbjct: 239 IELYSIKEHIVTRIFKSLGYEVESLDRVVFGGLTKKDLPRGRHRNLTKQEVINL 292 >UniRef50_D1Y0J0 Pseudouridine synthase n=1 Tax=Prevotella bivia JCVIHMP010 RepID=D1Y0J0_9BACT Length = 555 Score = 125 bits (315), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 79/234 (33%), Positives = 131/234 (55%), Gaps = 10/234 (4%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEP 61 P +RLNK+++ +G+CSRREAD +I G V +NG+ +G ++ D VK +L+ Sbjct: 316 PTEPLRLNKFLANAGVCSRREADDFILAGQVTVNGEVINELGTKILRTDEVKFQDKLVS- 374 Query: 62 REAEDLVLIALNKPVGIVSTTED-GERDNIVDFVNHS--KRVFPIGRLDKDSQGLIFLTN 118 E V + LNKP V+T++D +R ++D V + +R++P+GRLD+++ G++ TN Sbjct: 375 --LEKKVYVLLNKPKDYVTTSDDPQQRKTVMDLVKDACPERIYPVGRLDRNTTGVLLFTN 432 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAP---F 175 GDL +K+ +K Y V +DKPIT ++ +S G+ + K ++ P Sbjct: 433 DGDLASKLTHPKFLKKKVYHVFLDKPITANELQKISDGIELEDGEIKADAIEYANPEDQA 492 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDEL 229 I + G NR +RR+ E GY V KL+R ++ + G+WR LT+ E+ Sbjct: 493 QVGIEIHSGKNRIVRRIFESLGYRVVKLDRVMFAGLTKKNVRRGDWRFLTEKEV 546 >UniRef50_Q3AVD5 Pseudouridine synthase n=3 Tax=Cyanobacteria RepID=Q3AVD5_SYNS9 Length = 247 Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 78/250 (31%), Positives = 134/250 (53%), Gaps = 20/250 (8%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKP-GDVVKVNG----QLIEPR 62 RL K ++ +G+CSRR + +++ G V ++G+ A++GDQ P +++V+G + EPR Sbjct: 5 RLQKLMAAAGLCSRRRGEDWLQAGRVTVDGRVASLGDQADPNSQLIEVDGVPLISVQEPR 64 Query: 63 EAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSKR--VFPIGRLDKDSQGLIFLTNH 119 + LNKPVG++ + D + R ++D + H +R + P+GRLD DS+G + LT+ Sbjct: 65 ------VFLLNKPVGVICSCRDPQGRATVLDCLPHQERSGLHPVGRLDADSRGALLLTDQ 118 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTK----KCKVKKEAPF 175 G+L ++ +H K Y V V + + +R G+ + G +T+ C + A Sbjct: 119 GELTLRLTHPRYNHAKTYRVLVRGIPSSQALRRWRDGLLLDGRLTRPARVHCLRSRGASS 178 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 + + L +G NRQIRR+ E G+ V L+R I + L + G WR L E + L Sbjct: 179 LLEVELKEGRNRQIRRVAELLGHPVIDLQRVAIDGIRLDDLAEGCWRRLDAREWSTI--L 236 Query: 236 IENSSSEVKP 245 + N+ + P Sbjct: 237 VGNAPRSMDP 246 >UniRef50_C9KIR7 Pseudouridine synthase n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KIR7_9FIRM Length = 250 Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 85/242 (35%), Positives = 138/242 (57%), Gaps = 16/242 (6%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPG-DVVKVNGQLIEPREAE 65 RL K IS++GI SRR A++ I +G V ++G+ +G +V P + V+G+ I E Sbjct: 6 RLQKIISQAGIASRRAAEKMILEGRVRVDGQVVRELGTKVDPAAHTILVDGKKIAGEEQH 65 Query: 66 DLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSK-RVFPIGRLDKDSQGLIFLTNHGDLV 123 V + LNKP G +ST +D R ++D + + RV+P+GRLD +++GL+ +TN G L+ Sbjct: 66 --VYLLLNKPKGYLSTAKDDRGRRTVLDLLPEVRERVYPVGRLDNNTEGLLLITNDGALM 123 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKV----KKEAPFVFR- 178 N +L + EK Y V +TEE ++ + G+ + +T KV ++E R Sbjct: 124 NGLLHPRFEVEKTYHAGVTGKLTEEKLQMLRDGLLLEDGMTAPAKVSLLPEREPGERVRG 183 Query: 179 -----ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF 233 IT+ +G NRQ+RRM G +VK L+R R ++L G+ G+ R LT++E+ L+ Sbjct: 184 LTRAAITIHEGRNRQVRRMFAAVGCDVKSLKRVRFAGLTLKGVARGQHRALTEEEVSSLY 243 Query: 234 KL 235 +L Sbjct: 244 RL 245 >UniRef50_Q6SI36 Pseudouridine synthase n=1 Tax=uncultured marine bacterium 105 RepID=Q6SI36_9BACT Length = 255 Score = 124 bits (311), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 86/255 (33%), Positives = 138/255 (54%), Gaps = 14/255 (5%) Query: 2 LPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLI 59 +P VRL K ++ +GI SRR A+R IE G V +NG+ T +G + P D ++V+G+ + Sbjct: 1 MPSPKVRLQKVLASAGISSRRAAERLIEVGRVTVNGRSVTKLGAKADPDLDDIRVDGRKV 60 Query: 60 EPREAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSKR-VFPIGRLDKDSQGLIFLT 117 + +L+ KP G V+T D E R I++ +++ + V+P+GRLD DS+GL+ LT Sbjct: 61 KTGRPRIYLLVC--KPRGYVTTRFDPEGRRTILNLISNVREYVYPVGRLDYDSEGLVILT 118 Query: 118 NHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVT--------KKCKV 169 N G L ++ E+ Y V V ++ I + GV I G T ++ K Sbjct: 119 NDGTLAARLTHPRYGVERVYEVRVRGVPSQAAIDSLRHGVLINGRRTASSSVKFLRRLKA 178 Query: 170 KKEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDEL 229 K + R+ + +G NRQ+R+MCE G+ V +L RT+I + S + +G+ R LT E+ Sbjct: 179 KSSENALLRVAIREGRNRQVRKMCEAIGHPVIRLRRTQIGPLRDSSLKVGKHRLLTTSEV 238 Query: 230 IDLFKLIENSSSEVK 244 L + E S + K Sbjct: 239 AALMRASEVSHPQDK 253 >UniRef50_A7HJ83 RNA-binding S4 domain protein n=3 Tax=Thermotogaceae RepID=A7HJ83_FERNB Length = 245 Score = 124 bits (310), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 75/230 (32%), Positives = 136/230 (59%), Gaps = 10/230 (4%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGD-QVKPGDVVKVNGQLIEPREA 64 S+RL+K++S + I +R E + I++G V +N + D VK D+++++G IEP + Sbjct: 14 SIRLDKFLSNAHIGTRNEVKKIIKEGRVSVNFEIIRNPDFHVKLDDIIELDGNRIEPHKN 73 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNHS--KRVFPIGRLDKDSQGLIFLTNHGDL 122 V I +KP G VSTT D E ++++ ++H + GRLDKD +GL+ LTN G+ Sbjct: 74 ---VYIIFHKPSGFVSTTSDRE-PSVLNLIDHPYLNELHIAGRLDKDVEGLLILTNDGEF 129 Query: 123 VNKILRAGNDHEKEYLVTVDK--PITEEFIRGMSAGVPI-LGTVTKKCKVKKEAPFVFRI 179 + ++ EKEY + + +T+ ++ +S G+ + GT T K++K + + + Sbjct: 130 THNLISPKKHIEKEYWIYTKENVEVTQNMVKMVSEGIELEKGTKTLPGKIRKVSEKIISL 189 Query: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDEL 229 T+V+G Q+++MC G E +K+ R RI N++L G+ G+W++L+ +E+ Sbjct: 190 TIVEGKYHQVKKMCISLGIEWEKIVRVRIGNLTLEGLEKGKWKELSKEEI 239 >UniRef50_A6LIA0 Pseudouridine synthase n=23 Tax=Bacteroidales RepID=A6LIA0_PARD8 Length = 495 Score = 124 bits (310), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 134/237 (56%), Gaps = 10/237 (4%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEP 61 P+ +RLNK++S +G+CSRREAD +I++G V +N T +G ++ DVV N + P Sbjct: 256 PNEPIRLNKFLSNAGVCSRREADEFIQKGAVKVNDVVVTELGTKITRQDVVTFNEK---P 312 Query: 62 REAEDLVLIALNKPVGIVSTTED-GERDNIVDFVNHS--KRVFPIGRLDKDSQGLIFLTN 118 + E V I LNKP V+T++D ER ++D V ++ +R++P+GRLD+++ G++ LTN Sbjct: 313 VQIESKVYIVLNKPKNCVTTSDDPQERLTVMDLVKNACQERIYPVGRLDRNTTGVLLLTN 372 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPIL-GTVTKKC--KVKKEAPF 175 GDL +K+ +K Y V +DK + E + ++ G+ + G + ++ Sbjct: 373 DGDLASKLTHPSFKKKKIYHVWLDKNVAIEDMEKIANGLELEDGEIHADAISYASEDDKS 432 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDL 232 I + G NR +RR+ E GY V KL+R ++ + G+WR L + E+ L Sbjct: 433 QVGIEIHSGRNRIVRRIFESLGYHVTKLDRVYFAGLTKKNLGRGKWRYLNEREVNAL 489 >UniRef50_C1SPF0 Pseudouridine synthase n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SPF0_9BACT Length = 229 Score = 124 bits (310), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 79/231 (34%), Positives = 129/231 (55%), Gaps = 7/231 (3%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREAE 65 R+NKY++ SRR+AD+ IE+G V +NGK Q+ D V ++G I AE Sbjct: 2 TRINKYLAARSQLSRRDADKAIEEGRVRVNGKLPEGPWVQLSEKDKVTLDGNDISG--AE 59 Query: 66 DLVLIALNKPVGIVSTTEDGERDN---IVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDL 122 D A KP +++ DG + I F+ K + GRLD DS+GLI +N GD Sbjct: 60 DYFYWAFYKPKSVLTAYGDGHGKDTLEIYPFLREKKPAYS-GRLDYDSEGLIIFSNDGDF 118 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLV 182 + ++ RA EKEY+VTV++ + + + + G+ G ++C V++ + +++ L Sbjct: 119 IRRLQRAEEKVEKEYIVTVNRVLKKGEMDDLRKGIVYEGIRYRECIVEQHSHDRYQVVLH 178 Query: 183 QGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF 233 +G RQIR M +FG VKKL+R RI +V+L+ + GE+R+ + E+ ++ Sbjct: 179 EGKKRQIRHMFRNFGIRVKKLKRVRIGSVNLNELQPGEFREFSPKEMREML 229 >UniRef50_C4XSY8 Pseudouridine synthase n=11 Tax=Desulfovibrionales RepID=C4XSY8_DESMR Length = 322 Score = 123 bits (308), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 99/299 (33%), Positives = 147/299 (49%), Gaps = 24/299 (8%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEPREA 64 R+NK ++ +G+CSRR AD I G V +NG T G ++ P D + V+G + Sbjct: 9 TRINKALASAGVCSRRHADDLIAAGRVTVNGAVVTEAGLRIDPARDALAVDGAPVN-LAP 67 Query: 65 EDLVLIALNKPVGIVSTTEDGE-RDNIVDF---VNHSKRVFPIGRLDKDSQGLIFLTNHG 120 E + +AL+K G+V+T D E R + D V KR+FP+GRLD S+GL+ LT G Sbjct: 68 EIPITLALHKKPGVVTTASDPEGRPTVFDGLPEVWRGKRLFPVGRLDFFSEGLLLLTTDG 127 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGV---------PILGTVTKKCKVKK 171 +L ++ K Y VTV +T + + M+ G+ P+ V + + Sbjct: 128 ELALRLTHPRWHVPKRYRVTVRGQVTPDMLGTMARGMRLAEGERLAPVAARVVEGPAQDR 187 Query: 172 EAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELID 231 + + L QG+NRQIRRMC G V +L R V+L +PLG R+LT EL Sbjct: 188 S---ILEMELHQGVNRQIRRMCRDLGLTVLRLARVSQGPVALGDLPLGACRELTPAELAT 244 Query: 232 LFKLIENSSSEVKPKAKAKPKTA-GIKRPVVKMEKTAEKGG-RP---ASNGKRFTSPGR 285 L + + ++V P TA G + + + + GG RP AS G+ T P R Sbjct: 245 LRQSVGLDDADVAPAPPRPRPTAEGDTKRPPRPARPPQAGGKRPATKASGGETETGPRR 303 >UniRef50_A0L6G3 Pseudouridine synthase n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L6G3_MAGSM Length = 332 Score = 123 bits (308), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 83/240 (34%), Positives = 135/240 (56%), Gaps = 14/240 (5%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREAED 66 RL K+++E G+CSRRE + +I++G V +NG+ T +G +V D V V+GQL+ P+ + D Sbjct: 71 RLQKWLAEQGLCSRREGEVWIQEGRVSINGEVVTELGVKVAKRDRVAVDGQLVTPQRSRD 130 Query: 67 LVLIALNKPVGIVSTTEDGE-RDNIVDFV-NH-SKRVFPIGRLDKDSQGLIFLTNHGDLV 123 +I L+KP I+ T D + R I D + NH S R+ +GRLD +S+GLI LT+ G L Sbjct: 131 TAII-LHKPKSIICTRSDPQGRRTIFDLIENHGSSRLITVGRLDINSEGLIILTSDGQLA 189 Query: 124 NKILRAGNDHEKEYLV-TVDKPITEEFIRGMSAGVPI-------LGTVTKKCKVKKEAPF 175 + ++ + + Y V T + + + + GV + L V + + + + Sbjct: 190 HGLMHPSREVPRVYRVKTHGILLASQLEQIRTVGVRLEDGPTGPLEIVLDRGREQGNNSW 249 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 + ITL +G NR++RR+ +HFG +V +L R +SL + G WR +T DE L K+ Sbjct: 250 -YTITLREGRNREVRRIFDHFGLQVARLLRVGYGGISLGNLEPGAWRPVTVDEWNMLQKI 308 >UniRef50_Q7VBH8 Pseudouridine synthase n=1 Tax=Prochlorococcus marinus RepID=Q7VBH8_PROMA Length = 237 Score = 123 bits (308), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 76/233 (32%), Positives = 126/233 (54%), Gaps = 7/233 (3%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAEDL 67 RL K IS SGICSR++A+ I+Q VF+N + A++G++ + I P+ + Sbjct: 4 RLQKIISNSGICSRKKAEALIDQKRVFINNEIASLGEKADILIDIIRIDDYIIPKNIKSS 63 Query: 68 VLIALNKPVGIVSTTEDGE-RDNIVDFV--NHSKRVFPIGRLDKDSQGLIFLTNHGDLVN 124 +I LNKP G++ST D R ++D + N K + P+GRLDKDS+G + ++N+G L Sbjct: 64 KVILLNKPTGVISTCRDTHGRKTVLDLLPDNLQKGMHPVGRLDKDSRGALIISNNGLLTL 123 Query: 125 KILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKV----KKEAPFVFRIT 180 + +H+K Y V + ++ ++ G+ I T+K V ++ + I Sbjct: 124 HLTHPRFNHKKRYSVLITGVPSKNTLKKWRNGIEIDKKTTRKALVNIVKRQGNNTLLEIV 183 Query: 181 LVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF 233 L +G NRQIR++ + G+ V L R I N+ L+G+ G WR++ + E L Sbjct: 184 LFEGRNRQIRKVADKLGHPVIDLIRIEIGNIKLNGLKEGAWREINELEWNQLI 236 >UniRef50_D1N1S2 Pseudouridine synthase n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N1S2_9BACT Length = 241 Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 85/230 (36%), Positives = 122/230 (53%), Gaps = 6/230 (2%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEPR 62 D+ RL K +S +GI SRR A I+ G V +NG+ G +V PGD V+ +G + Sbjct: 4 DNRERLVKILSAAGIASRRGAGDLIKAGRVTVNGETVFEPGFRVAPGDRVEYDGVPVLAE 63 Query: 63 EAEDLVLIALNKPVGIVSTTEDGERD-NIVDFVNHSK--RVFPIGRLDKDSQGLIFLTNH 119 E + V I LNKP G V T D D VD + + R+F GRLDKDS+GLI +N Sbjct: 64 ERK--VYIMLNKPRGYVCTNADPHADLKAVDLIRLTPPLRLFSAGRLDKDSEGLILFSND 121 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRI 179 GD V ++ ++ K Y V V + + M GV G + K V + + I Sbjct: 122 GDYVARLTHPRHEILKVYQVRVRREFKPAELEQMRRGVLERGELLKVHAVSRCGDCTYLI 181 Query: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDEL 229 TL +G NR+IRR+ G ++L+R +I + L G+P+G WR+LT E+ Sbjct: 182 TLNEGKNREIRRLTAALGSPTRRLKRLQIGALRLGGLPVGNWRELTPAEI 231 >UniRef50_C4ZJR2 Pseudouridine synthase n=2 Tax=Betaproteobacteria RepID=C4ZJR2_THASP Length = 379 Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 85/269 (31%), Positives = 145/269 (53%), Gaps = 20/269 (7%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPR--EAE 65 RL K ++++G+ SRRE + ++ G + +NG A++G ++ PGD VKVNG+L+ R + Sbjct: 118 RLQKVLAQAGVASRREIEEWVVAGRISVNGLPASLGQKIGPGDRVKVNGKLVPLRFTQRS 177 Query: 66 DLVLIALNKPVGIVSTTEDGE-RDNIVDFVN--HSKRVFPIGRLDKDSQGLIFLTNHGDL 122 VLI +KP G + + +D E R + + + R +GRLD ++ GL+ TN GDL Sbjct: 178 PRVLI-YHKPEGEIVSRDDPEGRPTVFERLPILRKGRWLAVGRLDFNTSGLLLFTNDGDL 236 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKE----APFVFR 178 NK++ + E+EY V + +TEE ++ ++ G+ + K ++ E A +R Sbjct: 237 ANKLMHPRYELEREYAVRILGELTEEQVKSLTDGIQLEDGPAKFNLLRDEGGEGANHWYR 296 Query: 179 ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSG-IPLGEWRDLTDDELIDLFKLIE 237 +T+ +G NR++RRM E G V +L R R +V L + G W ++ + E L L Sbjct: 297 VTISEGRNREVRRMFEAVGLTVSRLMRVRYGSVELPARLKRGMWMEMPEAEACALAGL-- 354 Query: 238 NSSSEVKPKAKAKPKTAGIKRPVVKMEKT 266 P +++ + KRP VK+ +T Sbjct: 355 ------PPPQQSRQQDLRDKRP-VKLHRT 376 >UniRef50_UPI0001693918 pseudouridylate synthase n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001693918 Length = 249 Score = 122 bits (306), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 82/238 (34%), Positives = 133/238 (55%), Gaps = 17/238 (7%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKR-ATIGDQVKPG-DVVKVNGQLIEPREAE 65 RL K ++ +G+ SRR+ + I G V +N K +T+G +V P DV+KV+G+ I+ +E Sbjct: 4 RLQKVLAAAGVASRRKCEEIILAGRVEVNDKVVSTLGVKVNPHQDVIKVDGRAIQNQEK- 62 Query: 66 DLVLIALNKPVGIVSTTEDGERDNIV-DFVNHSK-RVFPIGRLDKDSQGLIFLTNHGDLV 123 + I NKP G++++ D E +V DF+ K RV+P+GRLD D++GL+ LTN G+ Sbjct: 63 --IYILFNKPKGVITSVSDPEGRRVVGDFLKGIKERVYPVGRLDYDTEGLLILTNDGEFA 120 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKV--------KKEAPF 175 N + + K Y TV + + GV + +T +V KK++ Sbjct: 121 NMVTHPRHHVSKTYHATVKGVPHGSVLEKLREGVKLEDGMTAPAEVEYHDIDPDKKQS-- 178 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF 233 V IT+ +G NRQ+RRM E GY V +L+R + ++ L G+P G++R + +E+ L Sbjct: 179 VISITIYEGKNRQVRRMFEAVGYPVTRLKRVKFGSIPLVGLPRGKFRRMRKEEVQALL 236 >UniRef50_A6ES27 Pseudouridylate synthase (Ribosomal large subunit pseudouridine synthase B) n=3 Tax=Bacteroidetes RepID=A6ES27_9BACT Length = 289 Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 86/240 (35%), Positives = 136/240 (56%), Gaps = 20/240 (8%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREAE 65 +RLNKYIS SGICSRREAD YIE G V +NGK +G +VK D V+ +G+ I P E Sbjct: 60 IRLNKYISNSGICSRREADTYIETGLVSVNGKIVNEMGYKVKLEDDVRFDGRRINP---E 116 Query: 66 DLVLIALNKPVGIVSTTEDGERDNIVDFVNHS--KRVFPIGRLDKDSQGLIFLTNHGDLV 123 + + LNKP G +TT + + + ++D V ++ R+ PIGRL +++ GL+ TN L Sbjct: 117 PMTYVLLNKPKGFATTTSESKGNTVMDLVANASNSRITPIGRLGRNATGLLLFTNDDKLK 176 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQ 183 K+ + G + + V +DK + I+ + G I G KK ++ +E +V T + Sbjct: 177 EKLSKKG--MSRLFHVELDKNLKAADIQKIREGFTIAG---KKIEI-EEINYVEGKTKKE 230 Query: 184 -GL------NRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLI 236 GL N IR + HF Y++ +L+ + +++ +P G+W+ LT EL +LF ++ Sbjct: 231 IGLKIKNLGNSVIRDIFAHFEYDIVRLDCVALAHLTKKDLPRGKWKILTTQEL-NLFSML 289 >UniRef50_C1F236 Pseudouridine synthase n=8 Tax=Bacteria RepID=C1F236_ACIC5 Length = 406 Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 94/268 (35%), Positives = 143/268 (53%), Gaps = 23/268 (8%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIE 60 P RL K ++ +G+ SRR+A+ I G V +NG+ T +G + D ++V+G+L++ Sbjct: 20 PRGGERLQKILASAGVASRRKAEELILAGRVQVNGQVVTEMGFKADAASDHIRVDGKLLQ 79 Query: 61 PREAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH----SKRVFPIGRLDKDSQGLIF 115 E L LNKP G V+T D E R +++F + +R++P+GRLD S+GL+ Sbjct: 80 --GPEKLRYFMLNKPKGYVTTVSDPEGRHTVMEFFHGRGKGGERLYPVGRLDYASEGLLL 137 Query: 116 LTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGV------PILGTV-TKKCK 168 +TN G L N + +A + EK YLV V TEE + + AG+ P G V T Sbjct: 138 MTNDGALANTLTKASSHVEKVYLVKVSGRPTEEQLEQIRAGIMIDRGRPGEGRVMTAPAG 197 Query: 169 VK----KEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDL 224 V+ E P+ F +TL++G NR+IR+M E G+ V+K+ R + L P GE R+L Sbjct: 198 VRMVRDAENPW-FELTLIEGRNREIRKMFEETGHFVEKIRRIGYGPLVLDVEP-GEVREL 255 Query: 225 TDDELIDLFKLIENSSSEVKPKAKAKPK 252 +E +D + KPKA K K Sbjct: 256 NPEE-VDSLRRAAQRKRAPKPKAATKTK 282 >UniRef50_C1XV14 Pseudouridine synthase n=2 Tax=Meiothermus RepID=C1XV14_9DEIN Length = 369 Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 86/261 (32%), Positives = 134/261 (51%), Gaps = 33/261 (12%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAED 66 +RL ++++ +G+ SRR+A+ I +G V +N + A IG V DVV ++G+ + R E Sbjct: 1 MRLQQFLARAGVASRRKAEDLIREGRVTINDQIAGIGSSVSESDVVCLDGERV--RLPEK 58 Query: 67 LVLIALNKPVGIVSTTEDGERDNIV-DFVNHSKRVFPIGRLDKDSQGLIFLTNHGDL--- 122 V+IAL+KPVG+ +T D + V V + P+GRLDKDS+GL+ LTN GDL Sbjct: 59 KVVIALHKPVGVTTTKSDPHAERTVYQLVPDVPGLHPVGRLDKDSEGLLLLTNDGDLTLK 118 Query: 123 -------VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPF 175 V K+ RA H + ++E R + GV + + + + + Sbjct: 119 LTHPRYGVRKVYRAWCKHGR---------VSEADCRRLVEGVALDDGLAQALEAEPTQEG 169 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 RI + +G R++RRM GY V +L R ++ + L + GEWR LT +E+ L Sbjct: 170 A-RIVMAEGKKREVRRMLGRLGYPVTRLVRLQVGPIKLGKLNPGEWRYLTPEEIGLL--- 225 Query: 236 IENSSSEVKPK-----AKAKP 251 +KP+ AKAKP Sbjct: 226 --QGQKPLKPRKKEGWAKAKP 244 >UniRef50_O67444 Uncharacterized RNA pseudouridine synthase aq_1464 n=4 Tax=Bacteria RepID=Y1464_AQUAE Length = 249 Score = 121 bits (303), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 79/241 (32%), Positives = 137/241 (56%), Gaps = 14/241 (5%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPG-DVVKVNGQLIEPRE 63 VR+NK++SE+G+ SRR+A++ I +G V +NG+ ++G +V P D+V+V+G+ ++P+ Sbjct: 3 EVRINKFLSEAGVASRRKAEKLILEGRVKVNGEVVRSLGVKVNPEVDIVEVDGKPVKPQR 62 Query: 64 AEDLVLIALNKPVGIVST---TEDGERDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTNH 119 I LNKP ++ + DG R I + + +RVFP+GRLD +++GL+ LTN Sbjct: 63 KR---YIILNKPCCYLTQLGRSPDG-RKTIEELIKDIPERVFPVGRLDYNTEGLLILTND 118 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK----KEAPF 175 G+L N+IL K YL V+ + ++ ++ M G+ + K ++ + Sbjct: 119 GELANRILHPRYKLPKVYLALVEGKVDQKTLKRMKQGIELEDGFAKPDNIRIVRYEGKNT 178 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 + IT +G ++R FG++VK+L+R I + L + G+WR+L EL LFK Sbjct: 179 LLEITFHEGRKHLVKRFLGAFGHKVKRLKRIAIGPIKLGKLSPGKWRELNQGELAQLFKA 238 Query: 236 I 236 + Sbjct: 239 V 239 >UniRef50_D0MUX7 Ribosomal large subunit pseudouridine synthase F, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0MUX7_PHYIN Length = 293 Score = 121 bits (303), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 88/247 (35%), Positives = 125/247 (50%), Gaps = 28/247 (11%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREA 64 S VRL K +++ G+CSRREA+ YI+ G+V ++G+R D +K V+ R Sbjct: 42 SLVRLAKLMAQKGLCSRREAEAYIQAGDVLVDGERVQ-ADWLKVPVDSDVSLDFRAQRHQ 100 Query: 65 EDLVLIALNKPVGIVSTTEDGERD---NIVDFVNHSK---RVFP--------------IG 104 V + LNKP+G VS+ + + ++ F N + RV P G Sbjct: 101 NKKVTLVLNKPLGYVSSQPELNKTPAVRLLTFENECQELSRVKPRQNVEPVALWKMAVCG 160 Query: 105 RLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVD---KPITEEF---IRGMSAGVP 158 RLD +S GL+ T G + K+L EKEYLV VD P+T++ I + AGV Sbjct: 161 RLDVNSTGLLLFTQDGTVAKKLLDPKGGIEKEYLVRVDLNLDPLTDKIRRKIEVLQAGVT 220 Query: 159 ILGTVTKKCK-VKKEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIP 217 +T + K V+ R+ L +G NR IRRMCEH G V L+R RI V L +P Sbjct: 221 SDEGITYRAKSVEILNANQLRVVLTEGKNRHIRRMCEHVGLRVMALKRVRIGGVKLGSLP 280 Query: 218 LGEWRDL 224 +G+WR L Sbjct: 281 VGQWRYL 287 >UniRef50_Q04T62 Pseudouridine synthase n=4 Tax=Leptospira RepID=Q04T62_LEPBJ Length = 244 Score = 120 bits (302), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 83/222 (37%), Positives = 128/222 (57%), Gaps = 10/222 (4%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEPREA 64 +RLN+++++ G+ SRR+ + I +G + +NGKR T +G ++KPG DVV G ++EP Sbjct: 13 IRLNRFLADCGLGSRRKTEELILRGQITINGKRVTDLGTKIKPGSDVVSYLGNVVEPTRK 72 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIV-DFVNHSKRVFPI-GRLDKDSQGLIFLTNHGDL 122 +LI LNKPVG + + D + V + + + F I GRLD +S+GL+ LTN G+L Sbjct: 73 PKRILI-LNKPVGYLCSHGDRFHEKTVFSLLPLTYKNFKIAGRLDLNSRGLLILTNDGEL 131 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIR-GMSAGVPILGTVTKKCKVKKEAP---FVFR 178 KI N EKEYLVT++ E++I+ G+ G + + K+ K P V+R Sbjct: 132 AQKISHPSNGSEKEYLVTLNHDPGEKWIQAAFQKGILDAGEIL-RAKMVKLVPGKNCVYR 190 Query: 179 ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGE 220 + L +G RQIRRM G V L+R RI ++ L + + E Sbjct: 191 VILAEGKKRQIRRMFHASGASVIDLQRIRIGSIQLEKLGIEE 232 >UniRef50_B1X5I1 Pseudouridine synthase, Rsu n=1 Tax=Paulinella chromatophora RepID=B1X5I1_PAUCH Length = 242 Score = 120 bits (302), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 75/232 (32%), Positives = 126/232 (54%), Gaps = 12/232 (5%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQ-VKPGDVVKVNGQLIEPREAED 66 RL K I+ SG CSRR+A++ + QG V +NG A +GD+ + D ++++G+ I R ++ Sbjct: 5 RLQKLIAISGFCSRRQAEKLLIQGQVRVNGLLAHLGDRAISHVDTIEIDGKPI--RLPDN 62 Query: 67 LVLIALNKPVGIVSTTEDGE-RDNIVDFVNHS----KRVFPIGRLDKDSQGLIFLTNHGD 121 V + +NKP G++S+ +D + R I+D + S +++ PIGRLD +S+G + LT G Sbjct: 63 HVTLLINKPTGVISSCQDPQGRPTILDLIPQSILQNRKLHPIGRLDSNSRGALILTTDGS 122 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKV----KKEAPFVF 177 L + H+K Y V V+ + I+ G+ + +T + ++ K+ + Sbjct: 123 LTMNLSHPRYSHDKAYKVWVEGRPSSSVIKIWQQGIFLDKKMTSRVELKILCKRVTSTLL 182 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDEL 229 I + +G RQIRR G+ V L+R I ++ L +P G WR L EL Sbjct: 183 EIVMKEGRKRQIRRTATFLGHPVIDLQRIGIASIRLGSLPEGRWRKLNSYEL 234 >UniRef50_C9YDN9 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YDN9_9BURK Length = 282 Score = 120 bits (301), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 93/282 (32%), Positives = 132/282 (46%), Gaps = 62/282 (21%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAED 66 +RLNK +++ G+ SRREAD +I +G V +NGK A +G QV P ++++ Q + + Sbjct: 1 MRLNKRMADLGMASRREADEWIAKGWVKVNGKVAEMGMQVLPDVRIEIDKQ--AQGQQAN 58 Query: 67 LVLIALNKPVGIVS-TTEDGE-------------RDNIVDFVNHS---KRVFPIGRLDKD 109 V I LNKP+GIVS EDG RD+ F H K + P GRLD D Sbjct: 59 QVTILLNKPLGIVSGQAEDGHEPAIKLIQPQNRWRDDNARFFFHGSQLKSLVPAGRLDID 118 Query: 110 SQGLIFLTNHGDLVNKILRAGNDHEKEYLVTV---------------------------- 141 S GL+ LT G + +++ + EKEYLV V Sbjct: 119 STGLLVLTQDGRVARQLIGEDSVMEKEYLVRVAYTGVENPGAANSPAATYPALAGRGKPQ 178 Query: 142 -------DKPITE--------EFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQGLN 186 D P+T E ++ + G+ + K KV+ + P R L +G Sbjct: 179 QLIRLDDDDPVTSDVQSVFPPEKLQLLRHGLILDDQRLKPAKVEWQNPEQLRFVLTEGKK 238 Query: 187 RQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDE 228 RQIRRMCE G +V L+R R+ V L +P+G+WR L E Sbjct: 239 RQIRRMCELVGLKVVGLKRVRVGKVMLGNLPVGQWRYLLPHE 280 >UniRef50_Q1Q1Q0 Pseudouridine synthase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1Q0_9BACT Length = 260 Score = 120 bits (301), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 82/245 (33%), Positives = 131/245 (53%), Gaps = 11/245 (4%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEPREAE 65 RL K ++ +GI SRRE + I G V ++G+R T +G V G V+ +G I P E Sbjct: 4 RLQKVLASAGIGSRRECENVILAGRVTVDGERVTALGATVDAGKSVIYCDGMPIRP---E 60 Query: 66 DLVLIALNKPVGIVSTTEDG-ERDNIVDFV-NHSKRVFPIGRLDKDSQGLIFLTNHGDLV 123 + LNKP + T D R +D + N +R++ IGRLDK S+GLI +TN G+L Sbjct: 61 AKIYYLLNKPKDCLCTNYDELNRLRAIDIIKNVKQRLYTIGRLDKQSEGLIIITNDGELS 120 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFV----FRI 179 NK+ + K Y + +D ++ E I + +GV + T+ ++KK F + Sbjct: 121 NKLSHPKYEVNKTYFIEIDGYLSNETITALQSGVWLAFGKTQPVRIKKMHRSFKKSRFEM 180 Query: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENS 239 L +G NR+IRRM G++V+ L R +I ++ + +G++R LT+ E+ L+ + E Sbjct: 181 ILCEGKNREIRRMLADHGHKVRTLRRIKIGSLCDPDLKVGKYRKLTEQEIKSLYSMTEKK 240 Query: 240 SSEVK 244 E K Sbjct: 241 PIEKK 245 >UniRef50_D1B9Q8 Pseudouridine synthase n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B9Q8_THEAS Length = 234 Score = 120 bits (300), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 76/211 (36%), Positives = 115/211 (54%), Gaps = 7/211 (3%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREAE 65 +RLN+Y++ G+ SRR+ + I G V LNG + +G +V+ GD V+V+G + P Sbjct: 1 MRLNQYLARCGLGSRRKVEALIVTGRVKLNGLVVSDLGCRVEEGDHVEVDGCSVHP---L 57 Query: 66 DLVLIALNKPVGIVSTTEDGERDNIVDFVN---HSKRVFPIGRLDKDSQGLIFLTNHGDL 122 D + I +NKP G+V ED ++D + + R FP+GRLDK+SQGL+ LTN GD Sbjct: 58 DKIYIVMNKPRGVVCAVEDRRYRTVLDLLPPQIRALRPFPVGRLDKESQGLLILTNDGDF 117 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLV 182 + IL K Y VTVD+ + E + + GV G + + V P R+ + Sbjct: 118 CDAILHPRRGIIKTYEVTVDRDVPSESLDRLKGGVWSDGEILEPLMVSLMGPRTVRVDIQ 177 Query: 183 QGLNRQIRRMCEHFGYEVKKLERTRIMNVSL 213 +G R++RRM G++V L R RI + L Sbjct: 178 EGKKREVRRMMAALGFKVLSLLRRRIGKMEL 208 >UniRef50_C2KPR0 Pseudouridine synthase n=3 Tax=Mobiluncus RepID=C2KPR0_9ACTO Length = 278 Score = 120 bits (300), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 82/242 (33%), Positives = 132/242 (54%), Gaps = 9/242 (3%) Query: 2 LPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIE 60 +P+ VRL K +S++G+ SRR ++ I++G V ++G+ T +G +V P + VNGQ I Sbjct: 37 IPEEPVRLQKLLSQAGVASRRASEDLIKRGRVQVDGETVTEMGLKVLPSARITVNGQRIH 96 Query: 61 PREAEDLVLIALNKPVGIVSTTE-DGERDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTN 118 A L + A NKPVG VST + + +R + D+ +RVF +GRLD + GLI LTN Sbjct: 97 TDAA--LQVWAFNKPVGTVSTMQPEDDRPCLGDWATKLPQRVFHVGRLDVATAGLILLTN 154 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK----KEAP 174 +GDL N+++ + K Y+ V + + + GV + VTK K + Sbjct: 155 NGDLANRLVHPRYEVPKTYVAMVQGQVKPGLGKVLRRGVELEDGVTKVDTFKLVEVRRGS 214 Query: 175 FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFK 234 + ++TL G NR +RR+ G+ V L RT I + L + G +R LT +L+ L + Sbjct: 215 SIVQLTLHSGKNRVVRRLLSEVGHPVSALTRTAIGTLRLGDLKEGHFRLLTGSDLVKLQE 274 Query: 235 LI 236 ++ Sbjct: 275 MV 276 >UniRef50_B8CBS5 Pseudouridylate synthase (Fragment) n=1 Tax=Thalassiosira pseudonana RepID=B8CBS5_THAPS Length = 253 Score = 120 bits (300), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 80/250 (32%), Positives = 129/250 (51%), Gaps = 24/250 (9%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEPREAE 65 +R+NK ++ SRR+AD+ + G + +N + + G +V NG + Sbjct: 13 IRINKVFKKTH--SRRQADQLVADGRITINDEPVHSAGQRVS-------NGGANSESSTQ 63 Query: 66 DLVLIALNKPVGIVSTTEDGERDNIVDFVNHS-----KRVFPIGRLDKDSQGLIFLTNHG 120 I KP+G+ TT+ DN++D + R+FP+GRLDK++ G+I +T+ G Sbjct: 64 VFEYIKYWKPLGVTCTTDRRIYDNLIDALQQDGCRPKSRIFPVGRLDKETSGIILMTSDG 123 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKE-------A 173 L N LR H K Y+V ++P+ + I+ + GVP L T CKVK + Sbjct: 124 RLPNAALRGKYKHPKTYVVKANRPVANDDIKRLREGVP-LTAPTLPCKVKAVQLSTLDLS 182 Query: 174 PFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIP-LGEWRDLTDDELIDL 232 ITLV+G NRQIR+M E GY V +L R MN++L + G+W LT+ E+ + Sbjct: 183 SRYLEITLVEGRNRQIRKMLEAIGYRVMELHRKSFMNLTLENLEGEGDWAHLTNREMEIV 242 Query: 233 FKLIENSSSE 242 ++++ + E Sbjct: 243 REVLDRAEQE 252 >UniRef50_A6DF49 Pseudouridine synthase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DF49_9BACT Length = 236 Score = 120 bits (300), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 76/231 (32%), Positives = 127/231 (54%), Gaps = 11/231 (4%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVK-PGDVVKVNGQLIEPREA 64 +R+ K+I+ G+CSRR+A+ + +G++ +N R T + QV D V+ + P Sbjct: 1 MRIAKFIAACGVCSRRKAEELVNEGHITINNHRVTELSTQVDVDNDEVRYRRK---PLVL 57 Query: 65 EDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLV 123 E + LNKPVG V T +D +D + R++ +GRLDK S+GLI LTN GDL Sbjct: 58 EKKLYYLLNKPVGYVCTNDDPFAEKKAIDLLPDKGRLYTVGRLDKPSEGLIVLTNDGDLA 117 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGM-SAGVPILGTVTK--KCKVKKEAP--FVFR 178 + + EK+Y VTV ++++ + + G+ G + ++KK+ P ++ Sbjct: 118 KIMTHPSFELEKKYRVTVKGRVSQKKLDYLVRDGLTFEGVNYRVLDARIKKQVPGGYMIN 177 Query: 179 ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDEL 229 TL +G NR+IR++C+ +VK+L R I ++L +P G WR +T E+ Sbjct: 178 FTLNEGKNREIRKICQSLDLQVKRLRRYEIAGIALGKLPPGAWRPMTQSEV 228 >UniRef50_B9KC52 Pseudouridine synthase n=1 Tax=Thermotoga neapolitana DSM 4359 RepID=B9KC52_THENN Length = 240 Score = 119 bits (299), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 78/233 (33%), Positives = 135/233 (57%), Gaps = 10/233 (4%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGD---QVKPGDVVKVNGQLIEPRE 63 +RL++Y+S GI +R+E I+ G V +N + T+ D ++ DVVKV+G++I+ E Sbjct: 1 MRLDRYLSNRGIGTRKEVRALIKHGRVTVNDR--TVLDPAYKLSDKDVVKVDGKVIDLPE 58 Query: 64 AEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLV 123 V I KP G V++T D + I++F+ K +FP+GRLDKD++GL+ +TN G+ Sbjct: 59 K---VYILFYKPAGYVTSTRDPHSETIMEFLPDIKGIFPVGRLDKDAEGLLLVTNDGEFA 115 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPIL-GTVTKKCKVKKEAPFVFRITLV 182 ++++ EKEY+V V+ ITE+ + + GV + G K V+K + +I + Sbjct: 116 HRVISPRWKVEKEYVVKVEGEITEDKLEKLRRGVSLRDGFFAKAKHVEKISNDTVKIVIT 175 Query: 183 QGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDELIDLFK 234 +G Q++RM G + L+R RI + L + GE+R L+++E+ +F+ Sbjct: 176 EGKYHQVKRMMAAVGLKTIHLKRVRIGGLRLPQEMKPGEYRFLSEEEVRQVFE 228 >UniRef50_A9GX03 Pseudouridine synthase n=2 Tax=Bacteria RepID=A9GX03_SORC5 Length = 399 Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 80/235 (34%), Positives = 128/235 (54%), Gaps = 15/235 (6%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRAT----IGDQVKPGDVVKVNGQLIEPRE 63 RL K I+ +G+ SRR ++ I G V +NG+ T D+ K D ++V+G+ + Sbjct: 4 RLQKIIARAGVASRRASEELILAGRVRVNGRVVTELGLKADRQK--DRIEVDGKRLV--- 58 Query: 64 AEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHS-KRVFPIGRLDKDSQGLIFLTNHGD 121 +E V +AL+KP +VST D E R + D V + R++P+GRLD + G++ +TN GD Sbjct: 59 SEAPVYVALHKPRNVVSTLRDPEGRPTVADHVRGTGARLYPVGRLDFATSGILLMTNDGD 118 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCK---VKKEAPFVF- 177 N +L K Y++ V ++++ + G+ + VT + ++ E + Sbjct: 119 FANALLHPRGGVPKTYVLKVQGVMSDDDLTPWREGIRLEDGVTLPAEARLLRHEGDKTWL 178 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDL 232 +TL +G N+QIRRM E G+ V +L RT VS G+ GEWR LT DEL+ + Sbjct: 179 EVTLREGRNQQIRRMGEATGWPVMRLARTTFAGVSSEGLRPGEWRALTVDELLHI 233 >UniRef50_Q24V73 Pseudouridine synthase n=3 Tax=Bacteria RepID=Q24V73_DESHY Length = 257 Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/245 (31%), Positives = 135/245 (55%), Gaps = 11/245 (4%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEP 61 P RL K ++++GI SRR A+ I QG V +NG+ T+G +V D + V+G+L+ Sbjct: 12 PRQEERLQKVLAQAGIASRRHAEEIILQGRVKVNGEVIRTLGTKVVSTDRIVVDGRLLSI 71 Query: 62 REAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTNH 119 + D L+KP G +++ D + R +++ + +RV+P+GRLD D+ GL+ LTN Sbjct: 72 PQ-NDYAYYLLHKPTGYITSVTDPQGRKTVMELMPKIPRRVYPVGRLDYDTSGLLLLTND 130 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPF---- 175 GDL ++++ EK Y V V + I E+ ++ + GV + T ++++ +P Sbjct: 131 GDLAHRLMHPSYGVEKTYRVEVGEKIPEQALKRLEKGVLLEDGKTAPARIREVSPKGRGS 190 Query: 176 --VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDL 232 + IT+ +G NRQ+RRM + G+ + L+R R + L + G +R L+ E+ L Sbjct: 191 LPTYEITIHEGRNRQVRRMFKAVGFPLSTLKRLRFGPLELDPSLAPGAFRTLSKTEIQHL 250 Query: 233 FKLIE 237 + ++ Sbjct: 251 RRAVK 255 >UniRef50_Q1IJT7 Pseudouridine synthase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IJT7_ACIBL Length = 680 Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 96/283 (33%), Positives = 149/283 (52%), Gaps = 40/283 (14%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGK-RATIGDQVKP-GDVVKVNGQLIEPR 62 SS RL K I+ +G+ SRR+A+ + G V +NG+ + +G + P D ++V+G+ P Sbjct: 2 SSERLQKIIAAAGMASRRKAEELVTAGRVTVNGEVKNELGSKADPETDDIRVDGK---PL 58 Query: 63 EAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTNHG 120 +AE LV + L+KP G V+T D E R+ ++D V R++P+GRLD S+GL+ LTN G Sbjct: 59 KAEQLVYVLLHKPKGYVTTVSDPEGRETVMDLVKGIPARLYPVGRLDYLSEGLLLLTNDG 118 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGV---PILGTV-------------- 163 ++ K+ A K+YLV V TEE I+ + GV P G + Sbjct: 119 EMAAKLTHASTHVPKKYLVKVSGEPTEEQIQELRNGVQLPPEQGHIHADPREGGRFGGEK 178 Query: 164 -------TKKCKV----KKEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVS 212 T CK+ + + P+ + +TL +G NRQIRRM + G+ V+K++R + Sbjct: 179 RRSTAVKTAPCKIELTREGDNPW-YEVTLNEGRNRQIRRMFDFIGHHVEKIKRVEYGPLK 237 Query: 213 LSGIPLGEWRDLTDDELIDLFKLIENSSSEVKPKAK-AKPKTA 254 L + GE+R L E+ L K E P+A+ KP+ A Sbjct: 238 LD-VENGEFRLLNPAEVARLKKAAEGKHE--APRARDEKPRFA 277 >UniRef50_C3X1E1 Pseudouridine synthase n=2 Tax=Oxalobacter formigenes RepID=C3X1E1_OXAFO Length = 510 Score = 117 bits (293), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 79/242 (32%), Positives = 139/242 (57%), Gaps = 11/242 (4%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPRE 63 D + +L+K ++++G+ SRR+ + I G V +NG+ A IG ++ P D V++NG+LI+ + Sbjct: 171 DDAPKLHKVLADAGLGSRRDMEELIVAGRVSVNGEPAHIGQRILPTDQVRLNGKLIQRKI 230 Query: 64 AEDLV-LIALNKPVGIVSTTEDGE-RDNIVD---FVNHSKRVFPIGRLDKDSQGLIFLTN 118 A+ L ++ +KP G + + +D E R ++ D + +SK +GRLD +++GL+ TN Sbjct: 231 AKSLPRVLTYHKPAGEIVSRDDPEKRPSVFDRLPLLKNSK-WLAVGRLDFNTEGLLLFTN 289 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI---LGTVTKKCKVKKEA-P 174 GDL N+++ + E+EY V + E + + AGV + +G +K E Sbjct: 290 SGDLANRLMHPRYNIEREYAVRTLGELEEGMRQKLLAGVDLGDGIGQFSKIVDGGGEGVN 349 Query: 175 FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDLF 233 +R+T+ +G NR++RRM E G V +L RTR V LS + G W +L ++ + +L Sbjct: 350 KWYRVTIGEGRNREVRRMFEAVGLTVSRLIRTRYGAVVLSQSLKRGRWDELEENAVRNLL 409 Query: 234 KL 235 +L Sbjct: 410 RL 411 >UniRef50_A6LLC7 RNA-binding S4 domain protein n=1 Tax=Thermosipho melanesiensis BI429 RepID=A6LLC7_THEM4 Length = 230 Score = 117 bits (293), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 81/224 (36%), Positives = 123/224 (54%), Gaps = 10/224 (4%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGD-QVKPGDVVKVNGQLIEPREAE 65 +RL+K++S + + SR+E R I+ G V +NG+ T D +VK D+V VN I P Sbjct: 1 MRLDKFLSNAKVGSRKEVKRLIKFGIVKINGEIITNVDFKVKENDIVTVNNTPITPYHN- 59 Query: 66 DLVLIALNKPVGIVSTTEDGERDNIVDFVNH--SKRVFPIGRLDKDSQGLIFLTNHGDLV 123 V I NKP G S+ + ER NI +F++H + + GRLDKD +GL+ +TN G Sbjct: 60 --VYIIFNKPTGYTSSKSEFER-NIFEFIDHPYVENLHIAGRLDKDVEGLLLITNDGIFT 116 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPIL-GTVTKKCKVKKEAPFVFRITLV 182 +KI + EKEY+V VDK I++E I+ G+ + GT K +K+ IT+ Sbjct: 117 HKITSPKSKIEKEYIVKVDKEISDEMIQKAKDGIVLKNGTRFKPAIIKRLKDNFISITIT 176 Query: 183 QGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPL--GEWRDL 224 +G +I+ + + G KK+ER RI + L L GEW ++ Sbjct: 177 EGKYHEIKLIVKFLGLSYKKIERIRIGKLKLEDFNLKRGEWSEI 220 >UniRef50_A9NGL0 rRNA pseudouridylate synthase n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NGL0_ACHLI Length = 238 Score = 116 bits (291), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 72/238 (30%), Positives = 129/238 (54%), Gaps = 14/238 (5%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRATI-GDQVKPGDVVKVNGQLIEPREAED 66 RL+K I+++G SRR+A+ I +G V +N + + G +V P D++ V G+ P E Sbjct: 3 RLSKVIAQAGCASRRKAENLITEGKVKVNDEVINVLGYKVSPKDIITVEGK---PLVKEP 59 Query: 67 LVLIALNKPVGIVSTTED-GERDNIVDFV---NHSKRVFPIGRLDKDSQGLIFLTNHGDL 122 LV LNKP G +STT D +R NI+D + + + R+FPI +L+ D+ GL+ +TN G+L Sbjct: 60 LVYYLLNKPTGYLSTTADIHKRRNILDLILKEDQNVRLFPIHKLEYDTSGLLLVTNDGEL 119 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKV------KKEAPFV 176 K+ +KEY++ + +E IR + G+ + + K + K + Sbjct: 120 TKKLTSQSESIQKEYVIRTKGIMIKERIREIKRGIKVENKIIKPVDIAIVELDKAHQSTL 179 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFK 234 ++ + ++++ M + G+EVK + R R +++L G+ G +R L E+ L++ Sbjct: 180 VKMIITNESAKELKTMFKQLGHEVKNMTRIRFDSLTLEGVNRGSYRKLKSHEVKYLYR 237 >UniRef50_Q0F269 Pseudouridine synthase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F269_9PROT Length = 289 Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 80/250 (32%), Positives = 129/250 (51%), Gaps = 11/250 (4%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKR-ATIGDQVKPGDVVKVNGQLIEP 61 P + R+N+Y++ G+CSRREADR+I+ G V +NG+ G VK GD V V+ +L+EP Sbjct: 39 PGNPERINRYLAHCGLCSRREADRWIQAGRVSINGQLIEAPGVIVKSGDTVMVDDKLVEP 98 Query: 62 REAEDLVLIALNKPVG-IVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHG 120 ++ +L NKP G + S + +R I DF++ + V IGRLD D++GL+ LT+ G Sbjct: 99 QQGHTYIL--YNKPKGQLCSRLDKKKRPLIYDFIDVAPNVQSIGRLDMDTEGLLMLTDDG 156 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILG----TVTKKCKVKKEAP-- 174 L + +EY V + E + + G +G + + V E+ Sbjct: 157 ALTRALTHPAAKVPREYRARVAGIVELETLAKLRRGGMDIGRGDTSDAWEVTVDSESAGH 216 Query: 175 FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDLF 233 I +++G R++RR E G+ V++L RTR + L +P G WR L E+ L Sbjct: 217 TWLNIIILRGRWREVRRTLEECGHPVRRLMRTRFGPIKLDEDMPKGTWRALNRGEIRKLR 276 Query: 234 KLIENSSSEV 243 + N ++ Sbjct: 277 DRVINPDAKT 286 >UniRef50_C8NNL7 Pseudouridine synthase n=8 Tax=Corynebacterium RepID=C8NNL7_COREF Length = 329 Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 80/242 (33%), Positives = 129/242 (53%), Gaps = 13/242 (5%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATI-GDQVKP-GDVVKVNGQLIEPREA 64 +RL K ++++G+ SRR A+ I+ G V +NG+ T G +V P DV++V+G I E Sbjct: 89 IRLQKVLAQAGVASRRHAEILIDNGRVEVNGRIVTTQGTRVNPNSDVIRVDGVRININE- 147 Query: 65 EDLVLIALNKPVGIVST-TEDGERDNIVDFVNH----SKRVFPIGRLDKDSQGLIFLTNH 119 DL LNKP G+ ST ++D R + D V+ +R+F +GRLD D++GL+ LTN Sbjct: 148 -DLEYFVLNKPRGMHSTMSDDLGRPCVGDLVSEKTASGQRLFHVGRLDADTEGLLLLTND 206 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPF---- 175 G+L N+++ + K YL TV + + G+ + K V+ F Sbjct: 207 GELANRLMHPKYEVRKTYLATVRGEAGPNLVTTLRKGIELEDGPAKADYVQIIDTFQGKS 266 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 + R+ + +G +RRM + G+ V++L RT++ V L G R L EL L+K+ Sbjct: 267 LIRLEIHEGRKHIVRRMLDEAGFPVERLVRTKLHTVQLGEQKPGSLRALNASELASLYKV 326 Query: 236 IE 237 +E Sbjct: 327 VE 328 >UniRef50_A4J9G8 Pseudouridine synthase n=47 Tax=Bacteria RepID=A4J9G8_DESRM Length = 249 Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 77/239 (32%), Positives = 133/239 (55%), Gaps = 13/239 (5%) Query: 1 MLPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQL 58 M + +RL++ ++ G+ +R+E + I+ V +NG+ A G + P D ++V G++ Sbjct: 1 MAENEKLRLDRLLNHMGLGTRKEIKKLIKAKQVMVNGELAMDPGLHIFPQRDHIEVQGEV 60 Query: 59 IEPREAEDLVLIALNKPVGIVSTTEDGERDNIVDFVN---HSKRVFPIGRLDKDSQGLIF 115 IE RE + + LNKP ++S TED ++D ++ HS FP+GRLDKD++GL+ Sbjct: 61 IEYRE---YIYLMLNKPQDVLSATEDASDKVVIDLLDPTYHSFNPFPVGRLDKDTEGLLL 117 Query: 116 LTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI---LGTVTKKCKVKKE 172 LTN+G L +++L K Y V +TEE + + GV + T+ + K+ + Sbjct: 118 LTNNGKLAHQLLSPKKHVPKTYYALVQGLVTEEDVAAFARGVELDDGYRTLPGQLKIIRS 177 Query: 173 APFV-FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDEL 229 AP +T+ +G Q++RM E G V L+R + + L + + GE+R+LTD+E+ Sbjct: 178 APQSEIELTIYEGKYHQVKRMFEAVGKRVIYLKRLSMGPLVLDNNLKPGEYRELTDEEI 236 >UniRef50_D1R854 Pseudouridine synthase n=4 Tax=Chlamydiales RepID=D1R854_9CHLA Length = 261 Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 73/230 (31%), Positives = 121/230 (52%), Gaps = 5/230 (2%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQ-VKPGDVVKVNGQLIEPREAED 66 RL+K ++ +G+ SRR + I G V +NG+ + V DV+ GQ + ++ + Sbjct: 34 RLSKVMAAAGVASRRACEMLIFDGCVTVNGEVTLVPQTLVDENDVITCKGQSVGKKQNK- 92 Query: 67 LVLIALNKPVGIVSTTEDGERDNIVD--FVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVN 124 V LNKP+G + + + + IV F +R+F +GRLDKD+ GLI +TN G N Sbjct: 93 -VYYILNKPIGYICSNKRNKDSKIVLDLFDTVEERLFTVGRLDKDTSGLIIVTNDGHFAN 151 Query: 125 KILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQG 184 +++ + KEYLV ++ + E + +S+G + T + +V K +IT+ +G Sbjct: 152 RVIHPSANIHKEYLVKTNEEVEAEHLSALSSGTLVEKTFVRPIRVSKVRRGTLKITIAEG 211 Query: 185 LNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFK 234 R+IR + E V +L R RI + L + GEWR++T E LF+ Sbjct: 212 KKREIRLLMESAKLPVLELTRIRIGGLHLGPLQPGEWREMTAREQTLLFE 261 >UniRef50_C9RK28 Pseudouridine synthase n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RK28_FIBSS Length = 243 Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 77/235 (32%), Positives = 125/235 (53%), Gaps = 13/235 (5%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQV-KPGDVVKVNGQLIEPREA 64 +R+NKYIS SG SRR AD + G V +NG+ + +G QV + D V V+G+L++ Sbjct: 1 MRINKYISLSGFASRRAADELVADGRVQVNGETISDLGHQVDETKDQVTVDGKLLKLPTN 60 Query: 65 EDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSKRVFP-IGRLDKDSQGLIFLTNHGDL 122 + +I +KP G V T +D + R + D++ F +GRLD S+GL+ T+ G+L Sbjct: 61 KKTKVIMFHKPAGCVCTKDDPQGRRTVYDYLPPGYHNFKYVGRLDLQSRGLLLFTDDGEL 120 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILG--------TVTKKCKVKKEAP 174 + ++ + + Y V +P++E + + GV I + V E Sbjct: 121 LYRLTHPSFEVPRSYYVWTTRPLSESAAQRLVDGVDIRDPEDPDAQEEIAFATDVYLENG 180 Query: 175 FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDEL 229 F + L++G NR+IRRM GYE++ L+R + L +P GE+R+LT +EL Sbjct: 181 FA-ELVLIEGKNREIRRMMRAIGYEIRDLKRVSYCQIQLGDLPAGEFRELTPNEL 234 >UniRef50_Q26G32 Ribosomal large subunit pseudouridine synthase F n=2 Tax=Flavobacteria RepID=Q26G32_9BACT Length = 326 Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 82/241 (34%), Positives = 133/241 (55%), Gaps = 20/241 (8%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPR 62 D ++RLNKYIS SGICSRR+AD YI+ G+V +NGK + +G +VK D VK +GQ I+P Sbjct: 91 DGTIRLNKYISNSGICSRRDADIYIKAGSVTVNGKPVSEMGYRVKLTDEVKFDGQNIQPY 150 Query: 63 EAEDLVLIALNKPVGIVSTTEDGERDN--IVDFVNHS--KRVFPIGRLDKDSQGLIFLTN 118 + + L+ LNKP G ++ + GER + ++D + + + +GRL + S GL+ TN Sbjct: 151 QKQYLL---LNKPKGFIAPRK-GERASKTVLDLMQSAGVANLHYVGRLGRQSVGLMLFTN 206 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFV-- 176 ++ NK+ + K Y V +D+ E + + G+ I G V KE +V Sbjct: 207 DLEMANKLNNPNLEMRKIYQVALDRSFKHEDLMQLRNGIAINGEVID----VKEINYVED 262 Query: 177 -----FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELID 231 I + G + ++ + E YE+K L+R + ++ +P G +R LT+ E+I+ Sbjct: 263 GRNNEIGIEIHSGKDNIVQALFEAVKYEIKVLDRVVLGGLTKKDLPRGHYRALTEQEIIN 322 Query: 232 L 232 L Sbjct: 323 L 323 >UniRef50_C7MNA2 Pseudouridine synthase n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MNA2_CRYCD Length = 296 Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 77/241 (31%), Positives = 129/241 (53%), Gaps = 15/241 (6%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKP-GDVVKVNGQLIEP 61 D +RL K+++ +G+ SRR ++R I G V +NG T +G +V P D V V+G ++ Sbjct: 47 DFPLRLQKFLARAGVASRRGSERLISAGRVAVNGIVITELGTKVDPLVDEVCVDGAIVT- 105 Query: 62 REAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSKR--VFPIGRLDKDSQGLIFLTN 118 V +ALNKP GI++T +D R + D + + +FPIGRLD+D+ GL+ + Sbjct: 106 -WGAPAVTLALNKPAGIITTMKDLRGRRCVADIMPTEQYPGLFPIGRLDQDTTGLLLFST 164 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKV------KKE 172 G+L N +L + K Y T++ I + + +++G+ + +T +V KK Sbjct: 165 DGNLGNALLHPSHGVSKVYRATIEGSIGQAALEQLASGILLDDGMTAPARVSVVQAGKKH 224 Query: 173 APFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDL 232 + V + L +G Q++RMC+ G+ V KL R + L+G+ G +R L EL L Sbjct: 225 S--VIELELHEGRKHQVKRMCQAVGHPVVKLHRASFGPIDLAGLATGAYRRLEGAELSVL 282 Query: 233 F 233 + Sbjct: 283 Y 283 >UniRef50_A4QE19 Pseudouridine synthase n=13 Tax=Corynebacterineae RepID=A4QE19_CORGB Length = 320 Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 81/242 (33%), Positives = 128/242 (52%), Gaps = 13/242 (5%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATI-GDQVKPG-DVVKVNGQLIEPREA 64 VRL K ++++G+ SRR A+ I+QG V +N + T G +V P DV++V+G I E Sbjct: 80 VRLQKVLAQAGVASRRHAEILIDQGRVEVNDRIVTTQGVRVNPNNDVIRVDGVRIHINE- 138 Query: 65 EDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNH----SKRVFPIGRLDKDSQGLIFLTNH 119 DL LNKP G+ ST D R + D V+ +R+F +GRLD D++GL+ LTN Sbjct: 139 -DLEYFVLNKPRGMHSTMSDELGRPCVGDLVSEKTASGQRLFHVGRLDADTEGLLLLTND 197 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPF---- 175 G+L N+++ + K YL TV T + + + GV + K + F Sbjct: 198 GELANRLMHPKYEVSKTYLATVRGEATNKLVSALRDGVELEDGPAKADFAQIIDVFQGKS 257 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 + RI + +G +RR+ + G+ V++L RT++ V L G R L EL L+K+ Sbjct: 258 LLRIEIHEGRKHIVRRLFDELGFPVERLVRTKLHTVQLGDQKPGSLRALNSSELTSLYKV 317 Query: 236 IE 237 ++ Sbjct: 318 VQ 319 >UniRef50_B0VG32 Pseudouridine synthase n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VG32_9BACT Length = 279 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 77/238 (32%), Positives = 127/238 (53%), Gaps = 10/238 (4%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEPRE 63 ++RLN+Y+++ G+ SRR+ + +I G + +NG + Q+ PG D V ++G+ I+P Sbjct: 39 TLRLNRYLADCGLGSRRKVEEFITTGRIAVNGNLVQDLSRQIIPGKDKVTLDGKPIQP-- 96 Query: 64 AEDLVLIALNKPVG-IVSTTEDGERDNIVDFVN-HSKRVFPIGRLDKDSQGLIFLTNHGD 121 A++ + LNKP G +VS ++ R + + K++ GRLDK+S+GL+F TN Sbjct: 97 AKEKFYLILNKPRGYVVSQNDELGRKTVYSLLPPKGKQLAYAGRLDKESEGLLFFTNDTA 156 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKC----KVKKEAPFVF 177 L+N + N EK Y V +++P+ + + GV I G T K K Sbjct: 157 LINLLTHPKNKVEKVYRVDINRPLNNMELNMLRKGVEIEGGKTLPAGIFVKSKNANGMTL 216 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 +I + +G RQIR+M E G +V L+R + + L +P+G WR L E+ L L Sbjct: 217 KIVITEGRKRQIRQMIEAVGAKVTYLKRLQFGPLKLKDLPVGRWRLLEPGEVKALLSL 274 >UniRef50_A6G735 Pseudouridine synthase n=2 Tax=Bacteria RepID=A6G735_9DELT Length = 300 Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 85/240 (35%), Positives = 133/240 (55%), Gaps = 16/240 (6%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPG-DVVKVNGQLIEPREA 64 VRL K+++ +G+ SRR+A+ I G V +NG+ +G +V P D V V G EP +A Sbjct: 31 VRLQKFMASAGVASRRKAEELITAGVVRVNGQVVRELGTRVFPERDRVTVRG---EPIQA 87 Query: 65 EDLVLIALNKPVGIVSTT----EDGERDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTNH 119 E V LNKP G+VS+ ++ R ++ ++ S+R++P+GRLD S+G++ LTN Sbjct: 88 ESKVYYVLNKPDGVVSSAAGSVDERGRPTVISLLHGVSERLYPVGRLDFHSRGVLLLTND 147 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPIL-GTVTKKCK----VKKEAP 174 G L + + K Y V +TEE + + GV + G +T+ ++ A Sbjct: 148 GGLAEALTHPRHGVVKTYHVKFQGKLTEEQEQLLRDGVELDDGAITRPVAELFAFRETAT 207 Query: 175 FV-FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF 233 V ++I + +GLNRQIRRM E G+ V KL R I +++ G+P GE+R L E+ L Sbjct: 208 NVWYQIGIREGLNRQIRRMGEAIGHPVLKLIRVAIGDITADGVPEGEFRALNATEVGQLL 267 >UniRef50_D0J9Y2 Pseudouridine synthase n=1 Tax=Blattabacterium sp. (Periplaneta americana) str. BPLAN RepID=D0J9Y2_BLASP Length = 255 Score = 114 bits (285), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 123/228 (53%), Gaps = 8/228 (3%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREAE 65 +RLN Y+S +GI SRREAD+ I+ G + +NGK T G V DV+K +G I+ ++ Sbjct: 16 IRLNHYLSNAGITSRREADKLIQSGLIEVNGKIVTKFGTVVHKNDVIKFHGSRIKNKKK- 74 Query: 66 DLVLIALNKPVGIVSTTED-GERDNIVDFV--NHSKRVFPIGRLDKDSQGLIFLTNHGDL 122 + I LNKP G +++T D R +++ + + R++P+GRLD+ + G++ LTN G + Sbjct: 75 --IYILLNKPKGYITSTRDPFNRKTVMNLIPNFQNYRIYPVGRLDRLTTGVLLLTNDGFI 132 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCK-VKKEAPFVFRITL 181 K+ +K YLV ++K I + + + G L K + K A + +I L Sbjct: 133 TEKLTHPKYKIQKIYLVVLNKTIHYQDLDKIRQGKIYLNEGRVKIDFLHKYAKNIVKIGL 192 Query: 182 VQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDEL 229 G NR IRR+ + Y+V KLER + + +G W L+ E+ Sbjct: 193 HIGWNRVIRRIFKKLTYQVIKLERIHFGGFTNKNLKIGSWCFLSKQEV 240 >UniRef50_A9KNY1 Pseudouridine synthase n=3 Tax=Firmicutes RepID=A9KNY1_CLOPH Length = 240 Score = 114 bits (285), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 75/234 (32%), Positives = 130/234 (55%), Gaps = 13/234 (5%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQ--LIEP 61 +S +RL+KY+++ + +R E + I +G V +NG T P V N ++ Sbjct: 5 NSMLRLDKYLADLSVGTRTEVKQMIRKGRVMVNGNTET-----SPETKVDSNHDKIFVDS 59 Query: 62 REAEDLVL--IALNKPVGIVSTTEDGERDNIVDFVNHSKR--VFPIGRLDKDSQGLIFLT 117 RE + L LNKP G+VS + D ++ +VD ++ +KR +FP+GRLDKD++GL+ +T Sbjct: 60 RELSYVTLEYFMLNKPAGVVSASNDKKQTTVVDLIDEAKRKDLFPVGRLDKDTEGLLIIT 119 Query: 118 NHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTK-KCKVKKEAPFV 176 N GDL +++L +K Y + P+ +E +AG+ I T K+++ + Sbjct: 120 NDGDLAHQLLSPKKHVDKVYFAKLRDPLKKEDEEAFAAGLKIDEEFTALPAKLERISEQE 179 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDEL 229 +T+ +G QI+RM E EV L+R + ++ L + LGE+R+LT++E+ Sbjct: 180 AYVTIREGKFHQIKRMFEATRNEVIYLKRISMGSLVLDESLSLGEYRELTEEEI 233 >UniRef50_B7FTM7 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FTM7_PHATR Length = 252 Score = 114 bits (284), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 82/239 (34%), Positives = 121/239 (50%), Gaps = 21/239 (8%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAE 65 S+RLNK ++ G CSRREA+R+IEQG V +NG + +V P D V++ Q + + + Sbjct: 7 SIRLNKLLAHQGWCSRREANRFIEQGLVKVNGV-VSRDARVAPTDTVELLPQAVTVQAQQ 65 Query: 66 DLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVF---------PIGRLDKDSQGLIFL 116 +L+ +KPVG VS+ E D+I S+R+F GRLD +S GL+ L Sbjct: 66 KTILV--HKPVGYVSSQP--ETDSIPQEQASSRRLFHPRTQLGWATAGRLDINSTGLLVL 121 Query: 117 TNHGDLVNKILRAGNDHEKEYLVTV-DKPI------TEEFIRGMSAGVPILGTVTKKCKV 169 T G + ++ +KEYLV V P T + + G+ G + V Sbjct: 122 TQSGRVAKTLIGPDVRVDKEYLVRVRPSPFFDRNQSTAAVLERLRDGIRDAGELLHAVSV 181 Query: 170 KKEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDE 228 ++ R L +G +R IRRMC G EV L+R RI + L +P+G+WR L E Sbjct: 182 ERVNTDQLRFVLHEGKHRHIRRMCRAVGLEVDGLKRVRIGEIVLGNLPVGQWRYLAPHE 240 >UniRef50_Q31GA0 Pseudouridine synthase n=2 Tax=Gammaproteobacteria RepID=Q31GA0_THICR Length = 317 Score = 114 bits (284), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 85/260 (32%), Positives = 139/260 (53%), Gaps = 14/260 (5%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLI-EPR-EAE 65 +L K ++ G SRRE ++ I QG V +NGK AT+GD+ P D +KVN QL+ E R E + Sbjct: 19 KLQKILARGGFGSRREVEKLISQGLVKVNGKVATLGDRAFPTDTLKVNDQLVKETRLEKQ 78 Query: 66 DLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH--SKRVFPIGRLDKDSQGLIFLTNHGDL 122 +I NKP G V + +D + R+ I + + R +GRLD ++ GL+ LTN+G+L Sbjct: 79 PTQVILYNKPEGQVCSRKDEKGRETIFTSLPRIINSRWISVGRLDINTSGLLILTNNGEL 138 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTK-----KCKVKKEAPF-- 175 N+++ + E+EY V V +++E + + GV + K K ++E Sbjct: 139 ANRLMHPSYEMEREYSVRVFGEVSDEILDRLKKGVKLEDGFAKFESIGKIPQQEEDSINQ 198 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDELIDLFK 234 +R+ + +G NR++RR+ E G +V +L RTR SL + G+ LT ++ L K Sbjct: 199 WYRVVIKEGRNREVRRIWESQGVQVSRLVRTRYGQFSLPRNLRRGKSEPLTWKQINQLLK 258 Query: 235 LIENSSSEVKPKAKAKPKTA 254 + + E +P + P A Sbjct: 259 SV-DLPEEPRPDLRNNPAKA 277 >UniRef50_B0TFD8 Pseudouridine synthase n=18 Tax=Bacteria RepID=B0TFD8_HELMI Length = 333 Score = 113 bits (282), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 78/241 (32%), Positives = 133/241 (55%), Gaps = 14/241 (5%) Query: 2 LPDSSVRLNKYISESGICSRREADRYIEQGNVFLNG----KRATIGDQVKPGDVVKVNGQ 57 + +VRL K ++ G+ SRREA+ I G V +NG ++ D + DV++V+G+ Sbjct: 1 MDSQTVRLQKLLAAHGVASRREAEAMIRAGRVRINGTVVREQGVRVDGAR--DVIEVDGR 58 Query: 58 LIEPREAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH-SKRVFPIGRLDKDSQGLIF 115 +++ REA + AL KP G+V+T +D + R ++ ++ ++RV+P+GRLD+D++GL+ Sbjct: 59 ILKRREAP--LYYALYKPRGVVTTCKDPQGRQTVIGLLSGVNERVYPVGRLDRDTEGLLL 116 Query: 116 LTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKV---KKE 172 LTN G L ++ EK Y + ++ ++ ++ GV + VT +V ++E Sbjct: 117 LTNDGQLAFRLTHPRFGVEKTYRARLRGDVSAGALKALAEGVQLEDGVTAPAQVRLLRRE 176 Query: 173 APFVF-RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELID 231 + I + +G RQIRRM + G+ V LER ++L + GE R LT EL Sbjct: 177 GDATWIEIKIHEGRKRQIRRMGDAIGHPVIDLERIAFGPITLGKLKPGEVRPLTSAELRA 236 Query: 232 L 232 L Sbjct: 237 L 237 >UniRef50_A5EVQ2 Pseudouridine synthase n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EVQ2_DICNV Length = 266 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 77/262 (29%), Positives = 140/262 (53%), Gaps = 18/262 (6%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQ--LIEP 61 D + R+ KY++ G+ SRR+ + +I++G + ++G+ A +G ++ + + ++G+ I Sbjct: 6 DDAQRIQKYLAARGVGSRRQIETWIKEGRLKVDGRVAELGQKISGNERLSLDGKPLRIAV 65 Query: 62 REAEDLVLIALNKPVGIVSTTEDGE-RDNIVDF---VNHSKRVFPIGRLDKDSQGLIFLT 117 +++ +KP G + T +D E R ++ ++H + V IGRLD ++ GL+ T Sbjct: 66 EHKNPHMILMYHKPAGEICTRKDPEGRVSVFQHLPKISHGRWV-AIGRLDLNTSGLLLFT 124 Query: 118 NHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI---LGTVTKKCKVKK--- 171 N G L N+++ + E+EY V V +TEE + + G+P+ L T+ C +K Sbjct: 125 NDGALANQLMHPSAEIEREYWVRVAGEVTEEMLTALRQGIPLDDGLARFTEICPLKTLHE 184 Query: 172 -EAPF--VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDD 227 + F F +TL +G NR++RR+ E G +V +L+R R +SL + G R LT Sbjct: 185 DDTQFNRYFSVTLKEGRNREVRRLWEAVGCKVSRLKRIRYGTISLPPSLSAGRHRLLTAG 244 Query: 228 ELIDLFKLI-ENSSSEVKPKAK 248 E L L+ E + + PK + Sbjct: 245 EQASLISLVSEKNRRDNSPKPR 266 >UniRef50_Q9HZ55 Ribosomal large subunit pseudouridine synthase B n=67 Tax=Gammaproteobacteria RepID=RLUB_PSEAE Length = 386 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 94/295 (31%), Positives = 150/295 (50%), Gaps = 23/295 (7%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAEDL 67 +L K ++ G+ SRR+ + +I +G V +NG A++G +V D + V+G LI EA + Sbjct: 15 KLQKVLARLGVGSRRDVEVWIAEGRVNVNGSVASLGQRVDSHDAITVDGHLIRREEAAES 74 Query: 68 V--LIALNKPVGIVSTTEDGE-RDNIVDFVN--HSKRVFPIGRLDKDSQGLIFLTNHGDL 122 V ++ NKP G V T +D E R I D + + R +GRLD ++ GL+ T G+L Sbjct: 75 VRRVLIYNKPEGEVCTRDDPEGRPTIFDRLPRLRTGRWINVGRLDINTTGLLLFTTDGEL 134 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAP------FV 176 N+++ + ++EY V V +TEE I + GV +L K ++AP Sbjct: 135 ANRLMHPSYEMDREYAVRVRGEVTEEMIERLLNGV-MLEDGPAKFSDIQQAPGGEGFNHW 193 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDELIDLFKL 235 + +++G NR++RR+ E G V +L+R R V L S + +G +R++ D ID+ Sbjct: 194 YHCVVMEGRNREVRRLWESQGLVVSRLKRVRFGPVFLTSELTMGRYREM-DQREIDIL-- 250 Query: 236 IENSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKGR 290 S EV K A P R K E+ K RP + +R + GRK+ R Sbjct: 251 ----SEEVGLKPVALPGMTTKAR--EKAERQQRKQARPLARSERPEA-GRKRAPR 298 >UniRef50_Q8X4Q8 Ribosomal large subunit pseudouridine synthase B n=117 Tax=Bacteria RepID=RLUB_ECO57 Length = 290 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 89/283 (31%), Positives = 150/283 (53%), Gaps = 18/283 (6%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVK--PGDVVKVNGQLIEPRE 63 S +L K ++ +G SRRE + IE G V ++GK A +GD+V+ PG ++++G LI RE Sbjct: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 Query: 64 AEDLV--LIALNKPVGIVSTTEDGE-RDNIVDFVN--HSKRVFPIGRLDKDSQGLIFLTN 118 + + + ++A KP G + T D E R + D + R +GRLD ++ GL+ T Sbjct: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI----LGTVTKKCKVKKEAP 174 G+L N+++ + E+EY V V + + +R +S GV + T K + Sbjct: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 Query: 175 FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDL---TDDELI 230 + +TL +G NR++RR+ E G +V +L R R ++ L G+P G W +L + L Sbjct: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 Query: 231 DLFKLIENSSSEVK-PKAKAKPKTAGIKRPVVKMEKTAEKGGR 272 +L +L +SS+V K + + K I+R V + + + GGR Sbjct: 242 ELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVS--GGR 282 >UniRef50_Q73PC4 Pseudouridine synthase n=1 Tax=Treponema denticola RepID=Q73PC4_TREDE Length = 234 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 122/227 (53%), Gaps = 6/227 (2%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREAE 65 +RL Y++ G+ SRR ++ I G V ++GK T +G +V + + ++G+ I P + Sbjct: 5 IRLQVYLARCGVASRRASENLILNGRVSVDGKIITELGIKVSGKEKICLDGKQIFPEAEK 64 Query: 66 DLVLIALNKPVGIVSTTEDGERDNIVDFV---NHSKRVFPIGRLDKDSQGLIFLTNHGDL 122 +L LNKP G V + D + I + +++R++ IGRLD S G I TN GD Sbjct: 65 RYIL--LNKPEGYVCSLADEKDRPIAASLLKDTYTERLYNIGRLDMLSGGAILFTNDGDF 122 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLV 182 K+ ++ EKEY V +E ++ GV I G K ++ + RI L+ Sbjct: 123 SAKVEHPSSEIEKEYEVITVFEYPDEILQKFLRGVRIEGVFYKALSAERISKNKMRIVLI 182 Query: 183 QGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDEL 229 +G NR+IRR+ + F ++KKL R RI V L+ +P G+ R LT +E+ Sbjct: 183 EGKNREIRRVLKFFNIKIKKLTRVRIGCVYLADLPSGKHRPLTSEEI 229 >UniRef50_D2R7V9 Pseudouridine synthase n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R7V9_9PLAN Length = 811 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 94/276 (34%), Positives = 143/276 (51%), Gaps = 16/276 (5%) Query: 3 PDSSV--RLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKP-GDVVKVNGQL 58 PD V RL K ++ +GI SRR+ + I +G V ++GK T +G +V P ++V+G+ Sbjct: 28 PDGVVAERLQKVLAAAGIGSRRDCEELITEGRVDVDGKVVTELGTRVDPVKQTIRVDGEA 87 Query: 59 IEPREAEDLVLIALNKPVGIVSTTED-GERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLT 117 + R+ + L + +NKP G+V+T D R ++D V +RVF +GRLD+ S+GLI +T Sbjct: 88 L--RKPQRLYFV-VNKPEGVVTTNYDQAGRTRVIDLVPTDERVFAVGRLDRASEGLIIVT 144 Query: 118 NHGDLVNKILRAGNDHEKEYLVTV-DKPITEEFI---RG--MSAGVPILGTVTKKCKVKK 171 N G+ N++ K YLV V + T E RG +S G + + K + K+ Sbjct: 145 NDGEFANRVTHPRYGVTKTYLVRVAGEASTAELAKLRRGIHLSDGFCKVDAIQVKRRHKQ 204 Query: 172 EAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELID 231 V I L +G NR+IRR+ G++V KL+R + ++ L +PLG WR L E+ Sbjct: 205 STDMV--IQLSEGKNREIRRILARIGHKVLKLKRLAVGSLKLGELPLGAWRWLDKQEIER 262 Query: 232 LFKLIENSSSEVKPKAKAKPKTAGIKRPVVKMEKTA 267 L E K A TA K K K+A Sbjct: 263 LLSEARLRRKENKKGKSATATTADGKAAPKKPAKSA 298 >UniRef50_C8QZD4 Pseudouridine synthase n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QZD4_9DELT Length = 240 Score = 112 bits (280), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 73/235 (31%), Positives = 123/235 (52%), Gaps = 10/235 (4%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKR-ATIGDQVKPG-DVVKVNGQLIEPREAE 65 RL K+++ +GI SRR+A+ YI QG V ++G+ A +G + P V +GQ + P + Sbjct: 4 RLQKFLARAGIASRRKAEEYIAQGRVQVDGRPVAQMGLTIDPERQQVTFDGQPVLPPSRK 63 Query: 66 DLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSK-RVFPIGRLDKDSQGLIFLTNHGDLV 123 VL LNKP G V+T D + R + +N R+FP+GRLD D++G + LTN G+L Sbjct: 64 LTVL--LNKPAGYVTTMADPQGRPIVTSLINEPGLRLFPVGRLDLDTEGALLLTNDGELA 121 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKK----EAPFVFRI 179 IL + Y TV E ++ + G+ + G T ++++ + + Sbjct: 122 QNILHPSRQINRTYHATVKGRPNREALQQLRRGIMLEGRRTWPARIRELRRNQESTTLEV 181 Query: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFK 234 + +G RQ+R+M + V +L+R + L +P G +R L+ ++L LF+ Sbjct: 182 IIHEGRKRQVRKMFAAINHPVLQLKRVAYGGLRLGSLPTGRYRRLSPEDLQLLFR 236 >UniRef50_B2UMD6 Pseudouridine synthase n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UMD6_AKKM8 Length = 467 Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 83/229 (36%), Positives = 120/229 (52%), Gaps = 6/229 (2%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEPR 62 + +R+NK+++ GI SRR ADR I +G V +NGK T G +V D VKV+G+ + P Sbjct: 11 NGGIRINKFLASCGIDSRRVADRLIGEGRVEVNGKVIDTPGMRVTEKDFVKVDGRHMTPM 70 Query: 63 EAEDLVLIALNKPVGIVSTTE-DGERDNIVDFVNHSKRVFP-IGRLDKDSQGLIFLTNHG 120 E V++ LNKP G V + E G + D + R +GRLD DS+GL+ +TN G Sbjct: 71 EE---VVVLLNKPRGYVCSREAQGAIGTVYDLLPPRLRHLNYVGRLDADSEGLLIMTNKG 127 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRIT 180 +L + EKEY VTVD+ + GV I K V + + I Sbjct: 128 ELTQVLSHPTGGIEKEYWVTVDQNFDNSVLMQFLRGVRIPEGNAKAKYVCRASARRACIV 187 Query: 181 LVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDEL 229 L QGL RQ+R+M + G V+KL R RI ++ + G W+ L D ++ Sbjct: 188 LEQGLKRQVRQMFQCLGLRVRKLVRVRIGSLWGGDLEPGGWKFLDDADV 236 >UniRef50_Q15Q67 Pseudouridine synthase n=2 Tax=Bacteria RepID=Q15Q67_PSEA6 Length = 241 Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 74/235 (31%), Positives = 124/235 (52%), Gaps = 20/235 (8%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLI----EPRE 63 RL++ +S G CSR+EA RY+ L GKR T+ + +KV+ + E + Sbjct: 15 RLDQLLSNLGYCSRKEA-RYL------LKGKRVTVKGEFAKSPALKVDPATVRVDGEALD 67 Query: 64 AEDLVLIALNKPVGIVSTTEDGERDNIVDFVNH-----SKRVFPIGRLDKDSQGLIFLTN 118 A D +L+ LNKP+G V + ++ E I D + + ++ +GRLDKD+ GLI +T+ Sbjct: 68 APDGILVMLNKPLGYVCSHDNNEGMRIYDLLPERWEFRNPKIVSVGRLDKDTSGLILVTD 127 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKC---KVKKEAPF 175 LV+++ + +K Y V+VD P+ + I + GV +LG ++C K++ + Sbjct: 128 DTKLVHQLTSPKHHVDKVYQVSVDCPLQSDIIDSFAKGV-VLGEGAEQCLPAKIEIVSEN 186 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELI 230 V +TL +G Q+RRM GY V+ L R++ L + GEW+ + +I Sbjct: 187 VANVTLNEGKYHQVRRMFAACGYHVEALHRSQFGQYRLQDLAQGEWQTVAPPSVI 241 >UniRef50_A6C4P7 Pseudouridine synthase n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C4P7_9PLAN Length = 352 Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 101/305 (33%), Positives = 156/305 (51%), Gaps = 30/305 (9%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKP-GDVVKVNGQLI--EPR 62 +RL K+++ +G+ SRR + YIE G V ++G T +G ++ P ++V+G+ + +PR Sbjct: 23 IRLQKFLAATGLGSRRHCEEYIETGRVSVDGDVITELGAKIDPETQFIEVDGERVRLQPR 82 Query: 63 EAEDLVLIALNKPVGIVSTTED-GERDNIVD-FVNHSKRVFPIGRLDKDSQGLIFLTNHG 120 LNKP G + T D R +VD F N +R+F +GRLD++S+GLI +TN G Sbjct: 83 R-----YYLLNKPSGFLCTNNDPAGRRRVVDLFPNDGQRLFTVGRLDENSEGLILVTNDG 137 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI---LGTVTKKCKVKKEAPFVF 177 +L ++ + Y V V E + + GV + V+ +KK+ F Sbjct: 138 ELAQRLAHPRYRVARTYHVQVVGNPPREKLDELRKGVRFKEGVFRVSGLKYLKKQGKSAF 197 Query: 178 -RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLI 236 +TL +G NR+IRRM G++V +L R R ++L + GE R L+D EL L +L+ Sbjct: 198 LELTLHEGQNREIRRMMARIGHKVIQLVRIRFGPLNLGKLKTGESRRLSDTELKKLRQLL 257 Query: 237 -ENSSSEV---KPKAKAKP-KTAGIKRPVVKM--EKTAEKG--------GRPASNGKRFT 281 E S ++ K K A P KT ++ V K E+ A G G + GKR Sbjct: 258 NEKHSPDIRHRKGKKNAAPAKTRAPRKSVGKRSGERGAAAGKSVSERISGGKKTGGKRSV 317 Query: 282 SPGRK 286 S GRK Sbjct: 318 STGRK 322 >UniRef50_UPI0001745DB4 ribosomal large subunit pseudouridine synthase B n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001745DB4 Length = 345 Score = 111 bits (277), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 87/262 (33%), Positives = 138/262 (52%), Gaps = 13/262 (4%) Query: 28 IEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREAEDLVLIALNKPVGIVSTTEDG- 85 + G V LNGK T + V D V V+G + P + V+I L+KP G+V + D Sbjct: 2 VRDGRVILNGKICTNLSTTVTDSDDVVVDGNKVRPHKG---VVIVLHKPRGLVCSRRDER 58 Query: 86 ERDNIVDFVNHS-KRVFPIGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKP 144 +RD I + + +GRLDK+S+GL+ +TN G++ ++L EKEY V ++ Sbjct: 59 DRDTIYSLLPEKFHTLHHVGRLDKESEGLLLMTNRGEVSQRLLHPSQGVEKEYEVILETR 118 Query: 145 ITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLE 204 E + ++ G K + + + L QGL RQIR M GYEVK+L Sbjct: 119 FDPENLTRLTKGFHTEDGYAKAERAWMIGDYKIGMVLKQGLKRQIRMMLYFLGYEVKRLV 178 Query: 205 RTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSSSEVKPKAKAKPKTAGIKRPV-VKM 263 R RI N+++ GI G W++L+D D+ K++ N ++ +PK +KPKTA +++ + + Sbjct: 179 RVRIGNLAIKGILEGNWKELSDK---DVDKMLLNPLAKDRPKM-SKPKTASVRKSLEIHR 234 Query: 264 EKTAEKGGRPASNGKRF--TSP 283 +K A++ R KR TSP Sbjct: 235 QKEAKRSSRKTGARKRTGGTSP 256 >UniRef50_A7HC79 Pseudouridine synthase n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HC79_ANADF Length = 354 Score = 110 bits (276), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 75/238 (31%), Positives = 125/238 (52%), Gaps = 11/238 (4%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATI-GDQVKPG-DVVKVNGQLIE 60 PD VRL KY++E+G+ SRR+A+ I G V +N + T+ G +V P D+V V+G+L+ Sbjct: 9 PDG-VRLQKYLAEAGVASRRKAEELILAGRVKVNARAVTVLGSKVDPARDLVTVDGRLVS 67 Query: 61 PREAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSK-RVFPIGRLDKDSQGLIFLTN 118 E L L KP G V+T D E R ++++ K RVF +GRLD D++G + T+ Sbjct: 68 RSETRSYYL--LYKPPGCVTTASDPEGRPTALEYLRGVKERVFSVGRLDFDAEGAVLFTD 125 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKV----KKEAP 174 G+L N++ H + YLV V + + AGV + + + + E Sbjct: 126 DGELANRLAHPRYGHRRTYLVKVRGEPPPAALERLVAGVRLEDGPARALEAVPHERAERN 185 Query: 175 FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDL 232 R+ + +G ++R+CE G +V++L R +++ G+ G++R L E+ L Sbjct: 186 VWIRVVVGEGRFHLVKRLCEAVGLQVQRLYRPEFGGITVEGLRPGQFRPLAPVEVRAL 243 >UniRef50_A3ESK0 Pseudouridine synthase n=4 Tax=Bacteria RepID=A3ESK0_9BACT Length = 616 Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 85/257 (33%), Positives = 134/257 (52%), Gaps = 10/257 (3%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATI-GDQVKP-GDVVKVNGQLIEP 61 D +RL K ++ G+ SRR A+ I G V +NG T+ G +V P D V V+G+ + P Sbjct: 15 DGLIRLQKLLAHRGLASRRNAEEMIRGGLVKVNGIVVTVPGTKVHPETDRVTVDGKTV-P 73 Query: 62 REAEDLVLIALNKPVGIVSTTED-GERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHG 120 E E + + KP GIVST D E+ + DF + +GRLD S+G++ LTN+G Sbjct: 74 VEPEPFLFL-FYKPKGIVSTLHDPDEKTTLKDFFPQINPLIHVGRLDIQSEGVLLLTNNG 132 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAG-VPILGTVTKKCKVKKE----APF 175 DL +IL + + YLV V + E + + +G V + G + ++++E Sbjct: 133 DLAQRILHPRYEIPRTYLVKVQGVVKPEHLDRLRSGKVRLDGRPVQPLELEQERLTETNS 192 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 +RITL +G NR++RR+ + Y V KL R N+ L+G+ GE+R +T +E+ L Sbjct: 193 WYRITLTEGRNREVRRLFDALHYFVLKLTRIAFGNLDLAGLEPGEYRLVTPEEIALLLSG 252 Query: 236 IENSSSEVKPKAKAKPK 252 E P + P+ Sbjct: 253 ARWKRKESIPPPERSPR 269 >UniRef50_A3JIZ1 Pseudouridine synthase n=1 Tax=Marinobacter sp. ELB17 RepID=A3JIZ1_9ALTE Length = 367 Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 69/236 (29%), Positives = 129/236 (54%), Gaps = 11/236 (4%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAEDL 67 R+ K ++ +G+ SRRE + +++ G + +NGK T G + DV +++G+ +E A ++ Sbjct: 58 RIQKLLARAGVGSRREIEGWMDAGRLLVNGKPVTPGQKATVSDVFELDGKRLEVAAAAEV 117 Query: 68 V--LIALNKPVGIVSTTEDGE-RDNIVDFVNHSK--RVFPIGRLDKDSQGLIFLTNHGDL 122 + ++ NKP G V+T +D E R + D + + R IGRLD ++ GL+ T G+L Sbjct: 118 LRRVLIYNKPEGEVTTRKDPEGRPTVFDRLPRLREHRWISIGRLDLNTTGLVMFTTDGEL 177 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPF----VFR 178 N+++ ++ ++EY V + + + I + GV + K + F Sbjct: 178 ANRLMHPSSEIDREYAVRIFGEVDDAMIERLRTGVTLEDGEAKFSDISAAGGTGMNRWFH 237 Query: 179 ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDELIDLF 233 +TL++G NR++RR+ E G V +L+R R ++ L S + +G+W +L D + +DL Sbjct: 238 VTLLEGRNREVRRLWESQGVRVSRLKRVRYGSIFLPSRLTVGKWEEL-DQKAVDLL 292 >UniRef50_C2KV26 Pseudouridylate synthase n=1 Tax=Oribacterium sinus F0268 RepID=C2KV26_9FIRM Length = 239 Score = 110 bits (275), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 77/239 (32%), Positives = 130/239 (54%), Gaps = 23/239 (9%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGD---QVKPGDVVKVNGQLI---E 60 +RL+KY+S+ G+ SR R I +G V +NG+ + D +V+PG N +++ E Sbjct: 1 MRLDKYLSDMGVESRSVLKREIRKGLVKINGE--IVKDPSMEVQPG-----NSEIVYKDE 53 Query: 61 PREAEDLVLIALNKPVGIVSTTEDGERDNIVDFVN--HSKRVFPIGRLDKDSQGLIFLTN 118 P E+ +NKPVG++S+TED ++ ++D + H K +FP+GRLDKDS+GL+ + N Sbjct: 54 PIHYEEFSYYMMNKPVGVLSSTEDRKQKTVLDLFSDKHRKDLFPVGRLDKDSEGLLLIMN 113 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVP-----ILGTVTKKCKVKKEA 173 G L +K+L EK+YLV + I+EE + + G+ I +C E Sbjct: 114 DGALAHKLLSPKMHIEKKYLVEIPGKISEEELDRLRQGIQYDTDLIAMPAKARCLSSTEE 173 Query: 174 PFVFRITLVQGLNRQIRRMCEHFG--YEVKKLERTRIMNVSLS-GIPLGEWRDLTDDEL 229 + +++G QI++M Y V KL+R + + L + GE+R L+++E+ Sbjct: 174 GSRVEVIIMEGKFHQIKKMFLALSTDYVVTKLQRLSMGPLHLDPALAPGEYRKLSEEEV 232 >UniRef50_UPI0001BCEF2E pseudouridine synthase n=1 Tax=Selenomonas noxia ATCC 43541 RepID=UPI0001BCEF2E Length = 296 Score = 110 bits (275), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 77/252 (30%), Positives = 128/252 (50%), Gaps = 10/252 (3%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGD-VVKVNGQLIEPREAE 65 RL K +S +G+ SRR A+ I G V ++G T +G + P + + V+ + I E Sbjct: 4 RLQKILSNAGVASRRAAEDLIRAGRVAVDGVAVTELGRKFDPANHTITVDSKPIHSDEKR 63 Query: 66 DLVLIALNKPVGIVSTTEDGE-RDNIVDFV-NHSKRVFPIGRLDKDSQGLIFLTNHGDLV 123 +L LNKP G +ST D R ++D + + R++P+GRLD D++G++ +TN G + Sbjct: 64 FYIL--LNKPRGYLSTARDDRGRKTVLDLLPDFPARLYPVGRLDADTEGVLLITNDGAIT 121 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK----KEAPFVFRI 179 +L + +K Y V P+TE + + G+ + +T K++ + V Sbjct: 122 QGLLHPRFEIDKVYHAEVAGPVTEGGLTRLRRGILLEDGMTASAKLRILRADKGYTVVET 181 Query: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENS 239 + +G NRQ+RRM G V L R R ++L G+ G +R LT DE+ +L + Sbjct: 182 IIHEGRNRQVRRMFAAIGCRVCALRRVRFAMLTLRGLSCGSFRHLTRDEIHELRIIAGVM 241 Query: 240 SSEVKPKAKAKP 251 SSE + +P Sbjct: 242 SSEEDCRRGCRP 253 >UniRef50_Q3Z8C8 Pseudouridine synthase n=5 Tax=Dehalococcoides RepID=Q3Z8C8_DEHE1 Length = 249 Score = 110 bits (274), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 130/237 (54%), Gaps = 10/237 (4%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQV--KPGDVVKVNGQLIEPR 62 S L K + E+ + SRR+ I+QG V LNG++A Q D V G+ +E Sbjct: 7 SGTPLVKVLVEARLGSRRKMAEAIKQGLVTLNGQKAESYSQPVNTQQDKVTFEGKPVELS 66 Query: 63 EAEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHSKR---VFPIGRLDKDSQGLIFLTN 118 + L+ LNKP IVSTT D R ++D ++ +FP+GRLD+ + GL+ LTN Sbjct: 67 RIRRIYLM-LNKPPEIVSTTSDELGRKTVMDLLHRRYEGAGLFPVGRLDETTTGLLLLTN 125 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI---LGTVTKKCKVKKEAPF 175 G+L N++ + EKEYL+++D +T+ + G+ + L + + +V E P+ Sbjct: 126 DGELTNRLTHPSYEIEKEYLISIDAALTQADKESLEKGMLLDDGLTSPARLSRVTDEPPY 185 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDL 232 +++ + +G R +RRM H GY++K L+R+RI + L + G+ R+LT E+ L Sbjct: 186 NYKLIIHEGKKRIVRRMFAHLGYQIKALKRSRIATLRLGKLEEGKTRELTPGEIAAL 242 >UniRef50_B1XJP9 Pseudouridine synthase n=3 Tax=Chroococcales RepID=B1XJP9_SYNP2 Length = 259 Score = 109 bits (273), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 80/236 (33%), Positives = 117/236 (49%), Gaps = 12/236 (5%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKP-GDVVKVNGQLIEPREAED 66 R+ K ++ GI SRR A++ I G V LNGK +GDQ P GD + V+G+ ++ E Sbjct: 4 RVQKILARWGIASRRGAEKLILAGRVTLNGKPVQLGDQADPEGDRLCVDGKPLKATERPR 63 Query: 67 LVLIALNKPVGIVSTTEDGE-RDNIVDFV----NHSKRVFPIGRLDKDSQGLIFLTNHGD 121 ++KP G+VST D + R ++D + K + PIGRLD S G + LTN G+ Sbjct: 64 HYYYLIHKPKGVVSTCADPKGRSTVLDLLPPPLRQGKGIHPIGRLDAQSTGALLLTNDGN 123 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILG---TVTKKCKVKK--EAPFV 176 + K Y V + + E + GV +LG T+ + +K + Sbjct: 124 FTLALTHPRYHIPKTYRVWLKGKVPEHVLDQWRQGV-MLGDRRTLPTQIHLKTITQDKTC 182 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDL 232 I L +G NRQIRR+ E G+ V KL R I N+ L + G+ R LT E+ L Sbjct: 183 IDIMLTEGRNRQIRRVAEQLGFPVVKLHRLAIGNLHLGDLQRGQARPLTKAEIKQL 238 >UniRef50_Q6AR36 Related to pseudouridine synthase n=1 Tax=Desulfotalea psychrophila RepID=Q6AR36_DESPS Length = 230 Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 71/238 (29%), Positives = 125/238 (52%), Gaps = 20/238 (8%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAED 66 +RL K++S+ G CSR +A+ I + + +NGK+AT+GD+V+ + + + G+L+E ++ Sbjct: 1 MRLQKFLSDIGYCSRGQAEDLIRKRKIMVNGKQATLGDKVRGNEKIVIEGRLLERKKGPA 60 Query: 67 LVLIALNKPVGI-VSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNK 125 ++ +KP + S ++DF + RVFP+G LD+ S+G++ LTN G++ NK Sbjct: 61 KKVLLFHKPEAVDCSLAPSKTTKTLLDFDFGTDRVFPVGYLDQASEGILLLTNDGEIANK 120 Query: 126 ILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFV--------- 176 + E EYL+T + I E I + T+ K +K V Sbjct: 121 LSLPEFRPEDEYLLTSPEEIDAEMIEKL----------TQARKAEKNKSVVDIEQIDAKH 170 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFK 234 RI G ++ I++MCE +++L R R+ N++L G+ G + L ++L L K Sbjct: 171 LRILQQGGRSKDIKKMCEAVELVIEQLVRVRVGNITLEGLEKGIYIPLDPEQLKRLLK 228 >UniRef50_Q140U9 Pseudouridine synthase n=80 Tax=Proteobacteria RepID=Q140U9_BURXL Length = 633 Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 74/242 (30%), Positives = 129/242 (53%), Gaps = 9/242 (3%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPRE 63 D + +L+K ++E+G+ SRR+ + I G V +NG+ A IG ++ P D V++NG+ ++ + Sbjct: 214 DDAPKLHKVLAEAGMGSRRDMEELIVAGRVSVNGEPAHIGQRIMPTDQVRINGKPVKRKL 273 Query: 64 AEDLVLIAL-NKPVG-IVSTTEDGERDNIVDFVNHSK--RVFPIGRLDKDSQGLIFLTNH 119 A + L +KP G IVS + R ++ D + K + +GRLD +++GL+ LT Sbjct: 274 ASKPPRVLLYHKPTGEIVSHADPEGRPSVFDKLPPMKTAKWLAVGRLDFNTEGLLMLTTS 333 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK----KEAPF 175 GDL N+ + E+EY V V + E + + GV + +++ + Sbjct: 334 GDLANRFMHPRYSVEREYAVRVVGELAEGMRQKLLHGVELDDGPANFLRIRDGGGEGTNH 393 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDLFK 234 + + L +G NR++RRM E G V +L RTR +SL G+ G W +L D+++ L Sbjct: 394 WYHVALAEGRNREVRRMFEAAGLMVSRLIRTRHGPISLPKGLKRGRWEELEDNQVRALMA 453 Query: 235 LI 236 + Sbjct: 454 SV 455 >UniRef50_UPI0001C337CA ribosomal large subunit pseudouridine synthase B n=1 Tax=cyanobacterium UCYN-A RepID=UPI0001C337CA Length = 254 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/237 (32%), Positives = 125/237 (52%), Gaps = 15/237 (6%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPG-DVVKVNGQLIEPREAED 66 R+ K +S+ GI SRR A+ I + + LNG+ +GD+ P D+++++G++I+ + Sbjct: 4 RVQKILSQLGIASRRHAEILILEKRLKLNGQIVLLGDKADPNHDLLELDGKIIKSHKKTQ 63 Query: 67 LVLIALNKPVGIVSTTEDGERDNIV-DFVNHSKR----VFPIGRLDKDSQGLIFLTNHGD 121 L I +NKPVGI+ + +D + +IV D + + R + P+GRLD +S G + LTN G+ Sbjct: 64 LFYILVNKPVGIICSCKDSQNRSIVMDLLPSNLRKGMGIHPVGRLDMNSSGALLLTNDGN 123 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK----KEAPFVF 177 L ++ K Y V V T+ ++ GV + G T ++ Sbjct: 124 LTLRLTHPRYHLPKIYEVLVRGNFTQAILKDWRQGVVLDGKKTLPAYLEVINNNRQYTNL 183 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-----GIPLGEWRDLTDDEL 229 +I L +G NR IRR+ + F +V KL RT I +SLS + LG +R L+ E+ Sbjct: 184 KIILTEGKNRHIRRIAQKFELDVIKLHRTAIGPISLSTSKVDNVKLGHYRLLSSSEI 240 >UniRef50_A0JV58 Pseudouridine synthase n=37 Tax=Actinobacteridae RepID=A0JV58_ARTS2 Length = 406 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 78/240 (32%), Positives = 125/240 (52%), Gaps = 11/240 (4%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKP-GDVVKVNGQLIEPRE 63 +RL K ++ +G+ SRR + I +G V ++GK T +G +V P V+ V+G I+ Sbjct: 167 GIRLQKVMASAGVASRRVCEEMISEGRVEVDGKVVTELGVRVDPKTAVIHVDGLRIQ--L 224 Query: 64 AEDLVLIALNKPVGIVSTTEDGE-RDNIVDFV--NHSKRVFPIGRLDKDSQGLIFLTNHG 120 E++V + NKP G+VST ED + R I DFV H +R+F +GRLD ++GL+ LTN G Sbjct: 225 DENMVYMVFNKPKGVVSTMEDPDGRPCISDFVRNTHGERLFHVGRLDVATEGLLLLTNDG 284 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTK--KCKVKKEAP--FV 176 +L N++ + K YLV V P + + AGV + + K+ P + Sbjct: 285 ELANRLTHPSYEVPKTYLVQVRGPFPQGIGAQLKAGVELEDGMASVDSFKLVDSTPGHVL 344 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLI 236 + L G NR +RR+ + G+ V +L R ++ + L G R+L E+ L + Sbjct: 345 IEVVLHSGKNRIVRRLFDAVGFPVLRLVRVKVGPIGLGDQRQGSIRNLGKQEVGHLLASV 404 >UniRef50_B6EJI1 Pseudouridine synthase n=8 Tax=Gammaproteobacteria RepID=B6EJI1_ALISL Length = 354 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 82/297 (27%), Positives = 155/297 (52%), Gaps = 23/297 (7%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDV-VKVNGQLIEPREA 64 S +L K ++ +G+ SRRE + I+ G V ++G++A +GD+++ D ++++G ++ +E+ Sbjct: 2 SEKLQKVLARAGLGSRRELETMIQAGRVSIDGQKAKLGDRLENVDARIRIDGHVVSVKES 61 Query: 65 EDLV--LIALNKPVGIVSTTEDGE-RDNIVDFVNHSK--RVFPIGRLDKDSQGLIFLTNH 119 D++ ++A +KP G + T D E R + D + K R +GRLD ++ GL+ T Sbjct: 62 TDVICRVLAYHKPEGELCTRHDPEGRRTVFDRLPKIKDSRWVSVGRLDANTAGLLLFTTD 121 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA----PF 175 G+L N+++ E+EY+ + I ++ ++ + GV + + V Sbjct: 122 GELANRLMHPSRKVEREYMCRIFGDINDKMVKNLVTGVKLEDGEARFEDVMYAGGEGMNH 181 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDE---LID 231 F + + +G NR++RR+ + G V +L+R R ++ L +P G W +L E L D Sbjct: 182 TFYVVINEGRNREVRRLWDSQGVTVSRLKRVRYGDIFLEKALPRGGWMELELKEVNYLRD 241 Query: 232 LFKLIENSSS----EVKPKAKAKPKTAGIKRPVVKM-EKTAE----KGGRPASNGKR 279 + +L S + + + +AK K+ I+R V + E+T E GGR N K+ Sbjct: 242 MVELPHEKESLLDVDKESRKRAKSKSQKIRRAVKRHDERTTEDRNTAGGRRGRNNKK 298 >UniRef50_A1K7C2 Pseudouridine synthase n=1 Tax=Azoarcus sp. BH72 RepID=A1K7C2_AZOSB Length = 356 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/260 (28%), Positives = 131/260 (50%), Gaps = 18/260 (6%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAE-D 66 RL K ++++G+ SRRE + + G + +NG A++G ++ PGD VK+NG+LI R ++ Sbjct: 92 RLQKVLAQAGVASRREIEELVVAGRISVNGLPASLGQKIGPGDRVKLNGKLIPLRFSQRS 151 Query: 67 LVLIALNKPVGIVSTTEDGE-RDNIVDFVN--HSKRVFPIGRLDKDSQGLIFLTNHGDLV 123 ++ +KP G + + +D E R + + + R +GRLD ++ GL+ TN GDL Sbjct: 152 PRVLVYHKPEGEIVSRDDPEGRPTVFERLPLLRKGRWLAVGRLDFNTSGLLLFTNDGDLA 211 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKV----KKEAPFVFRI 179 N+++ + +EY V + +TEE + + G+ + + + + +R+ Sbjct: 212 NRLMHPRYELTREYAVRLLGQLTEEQGQSLVDGIQLEDGPARFLSLVDAGGEGVNHWYRV 271 Query: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSG-IPLGEWRDLTDDELIDLFKLIEN 238 TL +G NR++RRM E G V +L R R V L + G W +L + + L L Sbjct: 272 TLAEGRNREVRRMFEAVGLTVSRLMRVRYGPVELPARLKRGMWMELPEADACALAGL--- 328 Query: 239 SSSEVKPKAKAKPKTAGIKR 258 P + P G +R Sbjct: 329 ------PPPRVDPSARGARR 342 >UniRef50_C1FHS6 Predicted protein (Fragment) n=4 Tax=Mamiellales RepID=C1FHS6_9CHLO Length = 248 Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 83/239 (34%), Positives = 109/239 (45%), Gaps = 31/239 (12%) Query: 21 RREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLI--EPREAED------------ 66 RREAD + G V +NG +V+ GDVV ++G+ + EP A Sbjct: 1 RREADEAVSAGRVRVNGALVKPSFRVRSGDVVTLDGKALDWEPFAAATEGSIGAHAGSNG 60 Query: 67 LVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNKI 126 + NKP G+ T E +R V S RVFP+GRLD+DS GL+ LT+ G + + Sbjct: 61 FFYLKYNKPRGVTCTMESSQRTKPAKGVG-SARVFPVGRLDRDSSGLVLLTDDGRVPEAL 119 Query: 127 LRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTV----------TKKCKV----KKE 172 L K Y V V T + I + GV I T T C V K E Sbjct: 120 LDPSRKAPKTYEVDVRPAPTPDAIEALRDGVVITTTQQRDGVTTTSPTAPCPVDLIKKSE 179 Query: 173 APFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL--SGIPLGEWRDLTDDEL 229 R L +G NRQIR+MCE G EV +L R + V L S + +G R L+ DEL Sbjct: 180 TSATLRFELREGRNRQIRKMCEAVGVEVVRLHRVSVGGVWLDESALEVGGVRALSGDEL 238 >UniRef50_Q6MIA3 Putative pseudouridylate synthase n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MIA3_BDEBA Length = 265 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 86/278 (30%), Positives = 141/278 (50%), Gaps = 31/278 (11%) Query: 28 IEQGNVFLNGKRAT-IGDQVKP-GDVVKVNGQLIEPREAEDLVLIALNKPVGIVSTTED- 84 IE+G V +NGKR +G +V P D + V+G+ + + + I LNKP G+++T +D Sbjct: 2 IEEGLVTVNGKRVYELGIKVDPQSDRILVDGKPLRKPLTQKIYAI-LNKPTGVLTTMDDP 60 Query: 85 GERDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVD- 142 +R + +++ RVFP+GRLD DS+G++ LTN GD NK++ + K YLV ++ Sbjct: 61 HDRPTVAEYLTELPVRVFPVGRLDWDSEGMLLLTNDGDFANKVMHPKAEVTKTYLVKLNG 120 Query: 143 KPITEEF-IRGMSAGVPILG---------TVTKKCKVKKEAPFVFRITLVQGLNRQIRRM 192 KP E F + + GV I+G + K K E ++I + +G NRQIR+M Sbjct: 121 KP--EPFQLEKLKKGVSIVGGKVSARHIEKIKKTGDNKSEKYEWYKIVITEGKNRQIRQM 178 Query: 193 CEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSSSEVKPKAKAKPK 252 G++V +L+R I + + + GE L D + +F + + E+K K K + Sbjct: 179 FAKIGFDVMRLQRVAIGRLRMGAVKTGELVYLNDAAVQRVF--LADDPEEIKTKRTYKGR 236 Query: 253 TAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKGR 290 + +K +PAS K P + K G+ Sbjct: 237 AT-----------SEKKTAKPASKVKTTKKPSKYKNGK 263 >UniRef50_Q1D5Q2 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q1D5Q2_MYXXD Length = 745 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 80/271 (29%), Positives = 132/271 (48%), Gaps = 19/271 (7%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEPR 62 ++ RL KY++ +G+ SRR A+ I G V +N K T +G +V+PG D+V V+G L+ P Sbjct: 2 AAERLQKYLARAGVASRRHAEELITAGRVAVNNKTVTELGSRVEPGTDLVTVDGTLVTPP 61 Query: 63 EAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHS-KRVFPIGRLDKDSQGLIFLTNHG 120 + L L KPVG+V+T D + R + ++V + KR+FP+GRLD D++G + T+ G Sbjct: 62 DESSYFL--LYKPVGVVTTLSDPQGRPTVANYVEETGKRLFPVGRLDYDAEGALLFTDDG 119 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK----KEAPFV 176 L +K+ + YL V + + GV + + V E Sbjct: 120 ALAHKLTHPSFQVPRTYLAKVKGAPDTATLDKLRGGVRLEDGMATPVSVSVFEAAERNTW 179 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLI 236 +I + +G I+R+C G+ V +L R V + G+ GE R L E ++L + Sbjct: 180 LKIVVAEGRPHLIKRLCAAVGHPVVRLFRPSYAGVGVEGLRPGELRPLKTSE-VELLNAV 238 Query: 237 ENSSSEVKPKAKAKPKTAGIKRPVVKMEKTA 267 + KA P T ++ P + + A Sbjct: 239 SD--------GKAAPPTGELRLPPRRHGRAA 261 >UniRef50_B9E1X9 Pseudouridine synthase n=39 Tax=Clostridium RepID=B9E1X9_CLOK1 Length = 245 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 80/233 (34%), Positives = 127/233 (54%), Gaps = 17/233 (7%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKR-----ATIGDQVKPGDVVKVNGQLIEPR 62 RL+KY++ G+ SRR+ + I +G V +NG TI D+ D + V+ + + Sbjct: 10 RLHKYMAACGVASRRKCEHIISEGRVKVNGVVVNKLGTTIDDE---RDEILVDNK--IIK 64 Query: 63 EAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGD 121 + V I LNKP G +S+ +D R ++D V ++RV+PIGRLD ++ G I LTN G+ Sbjct: 65 KENKKVYILLNKPRGYISSVKDDRGRKTLLDIVKVNERVYPIGRLDYNTSGAIILTNDGE 124 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKV-----KKEAPFV 176 + N I G++ K Y+ + + E I+ G+ I G +T K K KE+ V Sbjct: 125 VYNNIAHPGSNKSKIYIAAIKGIPSSEEIKRFENGIDIGGYITAKAKFDFISSNKESSKV 184 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDEL 229 +I + +G NRQ+R+MC+ G+ V L R I ++ L + G WR LT+ E+ Sbjct: 185 -KIEIHEGKNRQVRKMCDAIGHPVITLMRIAIGDIKLGNLKEGAWRYLTEKEI 236 >UniRef50_B9XS61 Pseudouridine synthase n=1 Tax=bacterium Ellin514 RepID=B9XS61_9BACT Length = 235 Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 74/235 (31%), Positives = 125/235 (53%), Gaps = 11/235 (4%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKP-GDVVKVNGQLIEPREA 64 VRL K+++E+G+ SRR ++R I G V +NG +G +V P D + ++G P Sbjct: 2 VRLQKFLAEAGVASRRASERIILGGRVSVNGDTVRELGTKVDPIHDSIALDGA---PLRL 58 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIV-DFV-NHSKRVFPIGRLDKDSQGLIFLTNHGDL 122 + + +ALNKP G V + +D + ++ D + ++ +GRLD DS+GLIFLTN G+ Sbjct: 59 KRKLYVALNKPRGYVCSRKDDRKRKVIGDLLPAEWDNLYSVGRLDSDSEGLIFLTNDGEF 118 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK----KEAPFVFR 178 + K+YL TV+ + +E ++ G+ G K + + + + + Sbjct: 119 SLHLTHPRYRVLKKYLATVEGRVEQEMLQRFKHGIVHEGEKLKVDRARTLSVQNSTSLVE 178 Query: 179 ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF 233 + L +G NR+IRR+ E G V +L R +I + L + G+WR LT+ E+ L Sbjct: 179 LELTEGKNREIRRLFESQGLTVSRLVRMQIGKIKLGELRSGKWRMLTEAEIKSLL 233 >UniRef50_Q01Z61 Pseudouridine synthase n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01Z61_SOLUE Length = 264 Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 79/232 (34%), Positives = 121/232 (52%), Gaps = 11/232 (4%) Query: 9 LNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQ-VKPG-DVVKVNGQLIEPREAED 66 L + S++G SR +A ++I G V +NGK D V P D V + G+ P +A Sbjct: 16 LERVFSKAGAGSRTDARKWISGGKVRVNGKVVLNPDHWVDPDHDKVTLEGK---PLKAAT 72 Query: 67 LVLIALNKPVGIVSTTEDGE-RDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTNHGDLVN 124 I L KP G ++T D E R + + K + P+GRLD D+ GL+ LTN D Sbjct: 73 KSYILLYKPKGYLTTYRDPEGRPTVYALLGDVGKWLSPVGRLDLDTSGLLVLTNDNDFAE 132 Query: 125 KILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKK--EAP--FVFRIT 180 +I + K Y + +++E I + AGV + T+ +VK+ + P +T Sbjct: 133 RITNPEHKVPKTYQIKAATVLSDEQIERLRAGVELSDGPTRPAEVKRLRDGPKHTFLEMT 192 Query: 181 LVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDL 232 + +G NRQ+RRM E +V KL RT I V + +P+G+WR+LT DE+ +L Sbjct: 193 ITEGRNRQVRRMLEAVESKVSKLVRTAIGPVRIGELPIGKWRNLTADEVHEL 244 >UniRef50_A4RSB2 Predicted protein (Fragment) n=2 Tax=Ostreococcus RepID=A4RSB2_OSTLU Length = 249 Score = 107 bits (267), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 74/249 (29%), Positives = 117/249 (46%), Gaps = 27/249 (10%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPRE 63 D R++K ++ G CSRREA+R IE G V ++G+ +G + + +++ G+ R Sbjct: 4 DELERVSKILARRGTCSRREAERLIEDGRVLVDGETIELGFKARANARIEITGE--GTRW 61 Query: 64 AEDLVLIALNKPVGIVS----------------------TTEDGERDNIVDFVNHSKRVF 101 + + + +NKP G VS E D++ Sbjct: 62 LREKLTVIVNKPPGYVSNLPAEGEIAAAACVEPRNAWMRAMEGTPMDDLKRVTRDVSSFN 121 Query: 102 PIGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILG 161 GRLDKDS+GL+ LT G L ++ GN K+Y+VT D + E +R ++ V + G Sbjct: 122 VCGRLDKDSRGLLILTEDGALARSVI-GGNGVLKKYVVTTDADVRESHMRSLNGRVQLDG 180 Query: 162 TVTKKCKVKK--EAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLG 219 V++ L +G NRQIRR+CE FG V L R +I +V + +P G Sbjct: 181 VELLPMNVQRLGHGSRTLEFNLREGKNRQIRRVCEKFGLRVVDLHRVQIGDVQIGDLPEG 240 Query: 220 EWRDLTDDE 228 WR +++ E Sbjct: 241 AWRLMSERE 249 >UniRef50_O32068 Uncharacterized RNA pseudouridine synthase ytzG n=68 Tax=Bacteria RepID=YTZG_BACSU Length = 239 Score = 106 bits (265), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 73/227 (32%), Positives = 116/227 (51%), Gaps = 14/227 (6%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPG-DVVKVNGQLIEPREA 64 +RL+K ++ SG SR+E ++ G V ++GK A + + V P V V G+ ++ RE Sbjct: 1 MRLDKLLANSGYGSRKEVKAVVKAGAVMIDGKPAKDVKEHVDPDTQEVTVYGEPVDYRE- 59 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSK---RVFPIGRLDKDSQGLIFLTNHGD 121 + + +NKP G++S TED + +VD + + FP GRLDKD++G + LTN G Sbjct: 60 --FIYLMMNKPQGVLSATEDSRQQTVVDLLTPEEMRFEPFPAGRLDKDTEGFLLLTNDGQ 117 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKK-----CKVKKEAPFV 176 L +++L K Y V + I+ E I + GV I G K K V Sbjct: 118 LAHRLLSPKKHVPKTYEVHLKSQISREDISDLETGVYIEGGYKTKPAKAEIKTNDSGNTV 177 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWR 222 +T+ +G Q+++M + G EV L+R + VSL + GE+R Sbjct: 178 IYLTITEGKYHQVKQMAKAVGNEVVYLKRLSMGRVSLDPALAPGEYR 224 >UniRef50_A5WGV6 Pseudouridine synthase n=7 Tax=Moraxellaceae RepID=A5WGV6_PSYWF Length = 345 Score = 105 bits (263), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 88/293 (30%), Positives = 153/293 (52%), Gaps = 17/293 (5%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIE---PREA 64 +L K ++ G+ SRR+ + I+ G V +N K A+IGD+V+ GD ++V+G+LI+ RE Sbjct: 44 KLQKALARMGLGSRRQMEEVIKAGRVSINQKPASIGDRVEQGDEIRVDGRLIKYKSEREK 103 Query: 65 EDLVLIALNKPVGIVSTTEDGE-RDNIVDF---VNHSKRVFPIGRLDKDSQGLIFLTNHG 120 VL A KP G + + D E R + + + H + + +GRLD +S GL+ TN G Sbjct: 104 RRRVL-AYYKPEGEICSANDPEGRTTVFERLPKLTHDRWIM-VGRLDINSTGLLLFTNDG 161 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA----PFV 176 +L ++++ N+ +EY V + +T E +R ++ GV + + K +K+ Sbjct: 162 ELAHRLMHPSNEIVREYAVRILGELTPEMMRNLTDGVMLEDGLAKFEDIKQGGGEGVNKW 221 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDE---LIDL 232 + + L +G NR++RR+ E G +V +L RT +V L + G + +L + LIDL Sbjct: 222 YHVKLKEGRNREVRRLIESQGLKVSRLLRTSYGSVDLPKELRTGRFIELDRKDIHRLIDL 281 Query: 233 FKLIENSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGR 285 + V KAK K + K + +T+ + GR +++ + TS R Sbjct: 282 VGIRPREDMGVHGKAKEKKERFQKKPMKARTIRTSSRSGRASTSTGKNTSATR 334 >UniRef50_C6HYA4 Pseudouridine synthase n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HYA4_9BACT Length = 638 Score = 105 bits (263), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 77/237 (32%), Positives = 127/237 (53%), Gaps = 18/237 (7%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKP-GDVVKVNGQLIEP 61 D +RL+K ++ G+ SRR++++ I G+V ++G+ T G +V P V+ V+G+ + P Sbjct: 23 DGRLRLHKILAHRGVASRRKSEQLIAAGSVTVDGEVVTEPGTRVDPKHQVILVDGRPL-P 81 Query: 62 REAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHG 120 RE E + + KP G+VST D E R + D+ + IGRLD ++G + LTN+G Sbjct: 82 REPETFLFL-FYKPKGVVSTLFDPEGRPTLRDYFPGIDPLLHIGRLDFQTEGALLLTNNG 140 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAG---------VPILGTVTKKCKVKK 171 DL +IL + + YLV + ++ + M+ G VP+ ++ Sbjct: 141 DLSQRILHPRFEIPRTYLVKIQGGMSPAHLERMARGEIRLDGRPVVPLELVPERQTSTNA 200 Query: 172 EAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDE 228 +RITL +G NR++RR+ E Y V KL RT ++L+G+ GE+R +T E Sbjct: 201 ----WYRITLTEGRNREVRRLFETLNYFVLKLVRTAFGPLTLAGLEPGEYRTVTPHE 253 >UniRef50_A5CX60 Pseudouridine synthase n=1 Tax=Candidatus Vesicomyosocius okutanii HA RepID=A5CX60_VESOH Length = 241 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 69/214 (32%), Positives = 119/214 (55%), Gaps = 9/214 (4%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPR---EA 64 RL K I+ +G SRR +R IEQG + +N K A IGD+ + +VK++G+ I E Sbjct: 4 RLQKLIANAGYGSRRWVERLIEQGRIEVNNKIAIIGDKTEITSLVKIDGRKINLSRYVEQ 63 Query: 65 EDLVLIALNKPVGIV-STTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLV 123 E V+I LNK G++ S +D R ++ + R +GRLD ++ GL+ +TN+GDL Sbjct: 64 ETKVII-LNKQAGVICSNRDDKGRKSVYSLLPKESRWIMVGRLDLNTSGLLLVTNNGDLA 122 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK----KEAPFVFRI 179 NK++ ++ ++EY V V + + ++ ++ GV +K ++ K A +++ Sbjct: 123 NKLMHPSSEIDREYAVRVLGQVKNKDLKKLTQGVVFDDGFSKFNQITFSGGKGANRWYKV 182 Query: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL 213 L +G R++RR+ E G++V +L R R + L Sbjct: 183 VLREGKKREVRRLWEVLGFKVSRLIRIRFGEIRL 216 >UniRef50_B7G3Y8 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7G3Y8_PHATR Length = 217 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 77/219 (35%), Positives = 114/219 (52%), Gaps = 27/219 (12%) Query: 20 SRREADRYIEQGNVFLNG--KRATIGDQVKP-GDVVKVNGQLIEPREAEDLVL----IAL 72 SRREAD+ IE G V +N ++ G +V P D + ++G I D + + Sbjct: 1 SRREADKLIEAGRVSVNDIPVKSKGGFKVVPFHDKITLDG--IPVTGTSDATINFDYVKY 58 Query: 73 NKPVGIVSTTEDGERDNIVDFV-----NHSKRVFPIGRLDKDSQGLIFLTNHGDLVNKIL 127 KPVG+ TT+ NI+D + + SKR+FP+GRLDK++ GLI LT+ G + N +L Sbjct: 59 WKPVGVTCTTDRKIAGNIIDALEEAGFDSSKRIFPVGRLDKETSGLILLTSDGRVPNAVL 118 Query: 128 RAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI-------------LGTVTKKCKVKKEAP 174 R + K Y V VD+P+ + + + GV I L TK C V+ Sbjct: 119 RGRHKQPKIYQVWVDRPVLAKDVAQLRDGVIITTVAQRDGNRAEPLTARTKSCAVQVLGR 178 Query: 175 FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL 213 ++TLV+G NRQIR+M Y VK+L R + M ++L Sbjct: 179 EKLQLTLVEGRNRQIRKMLGALNYTVKRLHRVQFMELTL 217 >UniRef50_Q1J642 Pseudouridine synthase n=51 Tax=Streptococcus RepID=Q1J642_STRPF Length = 244 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 79/253 (31%), Positives = 132/253 (52%), Gaps = 31/253 (12%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIG----DQVKPGDVVKVNGQLIEPR 62 +RL+K++ +G+ +R + +++ +F+N K T D+ K D+V G P Sbjct: 2 MRLDKFLVATGVGTRSQVKLLLKKKAIFVNQKVETSAKAHIDEYK--DLVTYQG---TPL 56 Query: 63 EAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKR---VFPIGRLDKDSQGLIFLTNH 119 E V LNKP G VS T+D ++ +++ ++ + R VFP+GRLDKD++GL+ LTN+ Sbjct: 57 VYESFVYYLLNKPSGYVSATQDRQQATVMELLDDTARQKTVFPVGRLDKDTRGLLLLTNN 116 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEE----FIRGMS--------AGVPILGTVTKKC 167 G L + +L KEYL V +TE F RG+S A + +L + Sbjct: 117 GQLAHDLLSPKKHVTKEYLAKVAGIMTEADKDYFARGISLKDHQCLPAHLEVLAS----- 171 Query: 168 KVKKEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTD 226 ++++ V +IT+ +G Q++RM G EV L+R + + L + GE+R LT Sbjct: 172 DLQQQTSLV-KITIQEGKFHQVKRMVAACGKEVLDLQRLSMGPLKLDPSLAEGEFRRLTP 230 Query: 227 DELIDLFKLIENS 239 +EL L ++S Sbjct: 231 EELQSLAPYCQSS 243 >UniRef50_B9ZS86 Pseudouridine synthase n=2 Tax=Chromatiales RepID=B9ZS86_9GAMM Length = 318 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 78/242 (32%), Positives = 126/242 (52%), Gaps = 13/242 (5%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAE 65 S R+ K ++ G+ SRRE + +IE+G V +N + A +GDQV P DV++V G++I E Sbjct: 2 SERVQKVLAARGLGSRREIEGWIERGEVKVNQRTAKLGDQVGPNDVIRVRGRVIHMAEHA 61 Query: 66 DLVLIALNKPVGIVSTTEDGERDNIVDFVN----HSKRVFPIGRLDKDSQGLIFLTNHGD 121 L+ +KPVG + + D E V F + +R +GRLD ++ GL+ T G+ Sbjct: 62 HRWLV-YHKPVGEICSRSDPEGRKPV-FASLPRLKGQRWVAVGRLDLNTSGLLLFTTDGE 119 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKE-----APFV 176 L N+++ + E+EY V V + ++ R + GV L + V +E A Sbjct: 120 LANRLMHPSHSLEREYAVRVLGEVPDDTRRMLLEGVE-LEDGPARFDVLEERGGDGANHW 178 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDLFKL 235 F + + +G NR +RR+ + G V +L R R V L G+ G RDL E+ L++ Sbjct: 179 FHVVVSEGRNRLVRRLWDAVGVTVSRLIRVRYGPVVLGRGLKTGASRDLEVREVEALYEA 238 Query: 236 IE 237 +E Sbjct: 239 VE 240 >UniRef50_O05668 Uncharacterized RNA pseudouridine synthase ML1370 n=49 Tax=Actinomycetales RepID=Y1370_MYCLE Length = 256 Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 81/239 (33%), Positives = 128/239 (53%), Gaps = 11/239 (4%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEPREA 64 +VRL K +S +GI SRR A++ I +G V ++G+ +G +V P DV V ++ Sbjct: 15 AVRLQKILSRAGIASRRAAEKLIIEGRVEVDGQLVRELGTRVDP-DVSVVRVDGVKVVVD 73 Query: 65 EDLVLIALNKPVGIVST-TEDGERDNIVDFVNH----SKRVFPIGRLDKDSQGLIFLTNH 119 + LV +ALNKP G+ ST ++D R + D + +K++F +GRLD D++GLI LTN Sbjct: 74 DSLVYLALNKPRGMYSTMSDDRGRPCVGDLIERRVRGNKKLFHVGRLDADTEGLILLTND 133 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILG--TVTKKCKVKKEAP--F 175 G+L ++++ ++ K YL TV + + +S G+ + V P Sbjct: 134 GELAHRLMHPSHEVSKTYLATVKGAVPRGLGKKLSVGLELDDGPAHVDDFAVVDAIPGKT 193 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFK 234 + R+TL +G R +RR+ G+ V+ L RT I VSL G R L DE+ L+K Sbjct: 194 LVRLTLHEGRKRIVRRLLTAAGFPVEMLVRTDIGAVSLGDQRPGCLRALLRDEIRQLYK 252 >UniRef50_Q2K4S3 Pseudouridine synthase n=10 Tax=Rhizobiaceae RepID=Q2K4S3_RHIEC Length = 312 Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 76/238 (31%), Positives = 123/238 (51%), Gaps = 18/238 (7%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDV----VKVNGQLIEPR 62 V L + +S+ G CSR +A+R I + V ++G+ T+ D D+ + V+G +I Sbjct: 70 VTLPRALSKLGYCSRTQAERLIAESRVAVDGR--TVSDASAWVDLSTARISVDGLVIA-- 125 Query: 63 EAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSK--RVFPIGRLDKDSQGLIFLTNH 119 AE + + LNKP G+V+T +D E R + D + + + P+GRLDK S+GL+ TN Sbjct: 126 -AEAKIYLMLNKPRGLVTTRQDPEGRPTVYDCLKNFDIPHLSPVGRLDKASEGLLLFTND 184 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVP-----ILGTVTKKCKVKKEAP 174 + +L K Y V +D+ + +E I M++G+ + T++ + Sbjct: 185 TEFAQTLLDPLTHVTKTYHVQIDRLMDDEEIAAMTSGIRHDGELLTAAATRRLRQGDRNS 244 Query: 175 FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDL 232 ++ + L +G NRQIRRM E G E +L R I + L +P G R LT+ EL L Sbjct: 245 WI-EVELDEGRNRQIRRMLEALGAECLRLVRVAIGGLELGELPKGAVRALTEGELQGL 301 >UniRef50_Q1D9N8 Pseudouridine synthase n=4 Tax=Cystobacterineae RepID=Q1D9N8_MYXXD Length = 268 Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 72/235 (30%), Positives = 114/235 (48%), Gaps = 20/235 (8%) Query: 9 LNKYISESGICSRREADRYIEQGNVFLNGKRATIG-DQVKPGDVVKVNGQLIEPREAEDL 67 L++ ++ +G+ ++EA+ I G V +NG+ A + V PG VKV+G L+ EA Sbjct: 26 LSRALARAGVFPQKEAEDAIRAGRVSINGRVAKMALTPVPPGATVKVDG-LVVSLEAPPT 84 Query: 68 VLIALNKPVGIVSTTEDGERDNIV-------------DFVNHSKRVFPIGRLDKDSQGLI 114 ++A +KP G++S+TE R V + H+ +GRLD DS GL+ Sbjct: 85 RVLAFHKPAGLLSSTERQHRTGTVFEALLPQLPPELAGYTWHA-----VGRLDVDSTGLL 139 Query: 115 FLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAP 174 TN LV K Y+ TV ++E + + G+ + + KV Sbjct: 140 LFTNDDKLVAHATSPDAHLPKRYVATVFSTASDERVEPLRRGMTLDDGPARPAKVNVRDE 199 Query: 175 FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDEL 229 +TL +G + Q++RM G V+ L R + +V L GIP G +R LTDDE+ Sbjct: 200 HTVEVTLTEGRHHQVKRMLGAVGLPVRALHREAVGSVDLEGIPEGTFRLLTDDEV 254 >UniRef50_C5CXG1 Pseudouridine synthase n=4 Tax=Comamonadaceae RepID=C5CXG1_VARPS Length = 604 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 76/247 (30%), Positives = 133/247 (53%), Gaps = 16/247 (6%) Query: 1 MLPDS-SVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLI 59 +LP++ S +L+K ++++G+ SR E + I QG + +N + A IG +++ GD VK+NG+ I Sbjct: 191 LLPEADSPKLHKVLAQAGLGSRLEMEALILQGRISVNNEPAHIGQRIQYGDQVKINGKPI 250 Query: 60 EPREAEDLV-LIALNKPVGIVSTTEDGERDNIVDFVN----HSKRVFPIGRLDKDSQGLI 114 R A +IA +KPVG V T +D + V F + +GRLD +++GL+ Sbjct: 251 RYRIAPPPPRVIAYHKPVGEVVTHDDPQNRPTV-FRKLPRLQQGKWQSVGRLDLNTEGLL 309 Query: 115 FLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI------LGTVTKKCK 168 ++ GDL N+++ E+EY V V + E + + GV + GT+ + Sbjct: 310 LFSSSGDLANQLMHPRFGLEREYAVRVLGALNAEEKKKLLEGVRLDDGMAQFGTIEEGGG 369 Query: 169 VKKEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDD 227 +R+T+ +G NR++RR+ E G+ V +L R R + L G+ G W +L + Sbjct: 370 EGSN--HWYRVTISEGRNREVRRLFESVGHAVSRLIRIRYGAMVLPRGLKRGAWMELDER 427 Query: 228 ELIDLFK 234 ++ LF+ Sbjct: 428 DISALFQ 434 >UniRef50_UPI0000D52F9C putative ribosomal large subunit pseudouridine synthase B (Pseudouridylate synthase) (Uracil hydrolyase) n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D52F9C Length = 242 Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 72/235 (30%), Positives = 120/235 (51%), Gaps = 10/235 (4%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAEDL 67 RL K ++ +G SRR + I G V +NG+ A +G V D +K+ + +E + + Sbjct: 5 RLQKILARAGYGSRRGCEEIISSGKVIVNGEVAKLGCVVNSDDEIKIGSKKVEFIDVQTR 64 Query: 68 VLIALNKPVGIV-STTEDGERDNIVDFV---NHSKRVFPIGRLDKDSQGLIFLTNHGDLV 123 L LNKP G++ S +G +I D + ++ K + +GRLD +S GLIF TN G+L Sbjct: 65 -LFVLNKPTGVICSKKTEGNLRSIYDLIPKIDNEKNLMIVGRLDANSSGLIFFTNDGNLS 123 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKV----KKEAPFVFRI 179 I N ++EYLV EE M G+ I + + + K + + + Sbjct: 124 EFIAHPSNLFDREYLVRARGHFDEEIKENMLRGIKIDNQLLRLSDIVDGDKTNSNRWYTV 183 Query: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDELIDLF 233 L+ G NR+IR++ E G +V +L+R R + L G+ G+W++L +L ++ Sbjct: 184 CLLTGRNREIRKIFESQGLQVSRLKRVRFGPIFLPKGLKEGDWQELKSKDLEKMY 238 >UniRef50_Q47QM5 Pseudouridine synthase n=3 Tax=Actinomycetales RepID=Q47QM5_THEFY Length = 375 Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 77/238 (32%), Positives = 122/238 (51%), Gaps = 13/238 (5%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKP-GDVVKVNGQLIEPREA 64 +RL K ++++G+ SRR + I G V ++G+ G +V P ++V+G + + Sbjct: 135 IRLQKALAQAGVASRRACEELIAAGRVSVDGQIVRRFGARVDPEKSEIRVDGMRVV--TS 192 Query: 65 EDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH----SKRVFPIGRLDKDSQGLIFLTNH 119 ++L ALNKP G+VST D E R I D+ +R+F +GRLD D++GLI LTN Sbjct: 193 QNLRYYALNKPRGVVSTMFDPEGRPTIGDYAAQIGPIEERLFHVGRLDTDTEGLILLTND 252 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKK----EAPF 175 G+L N++ K YL V P+ + IR + GV + K + E Sbjct: 253 GELANRLTHPRYKVTKTYLAKVPGPVPRDVIRQIRKGVELDDGFVKVDSFRVIDNIEPKA 312 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF 233 + I L +G +RR+ + G+ V L RT+I V L+ + G R LT E+ +L+ Sbjct: 313 LVEIRLHEGRKHIVRRLMKAVGHPVSDLARTQIGPVGLNNLKSGTIRALTSQEVSELY 370 >UniRef50_C5WHE9 Pseudouridine synthase n=3 Tax=Lactobacillales RepID=C5WHE9_STRDG Length = 245 Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 77/239 (32%), Positives = 129/239 (53%), Gaps = 15/239 (6%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAE 65 ++RL+K++ E+G+ SR + +++ + +N + T +V+ + V L +P E Sbjct: 2 TMRLDKFLVETGVGSRSQVKSLLKKKAILVNQEVET-SPKVQINEHKDVVTYLGKPLTYE 60 Query: 66 DLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKR---VFPIGRLDKDSQGLIFLTNHGDL 122 V LNKP G +S T+D + ++D ++ + R VFP+GRLDKD++GL+ LTN+G L Sbjct: 61 AFVYYILNKPAGFLSATKDRAQATVIDLLDETARQKDVFPVGRLDKDTRGLLLLTNNGQL 120 Query: 123 VNKILRAGNDHEKEYLVTVDKPIT----EEFIRGMS----AGVPILGTVTKKCKVKKEAP 174 + +L KEYL V +T ++F +G+S +P V K + +E Sbjct: 121 AHDLLSPKKHVTKEYLAKVAGIMTDADKDDFAKGISLKDHQCLPAKLEVLDK-DLSQET- 178 Query: 175 FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDL 232 V IT+ +G Q++RM G EV +L+R + + L G+ G++R LT DEL L Sbjct: 179 CVVSITIQEGKFHQVKRMVAACGKEVLELQRLSMGPLRLDPGLAEGDFRRLTSDELQSL 237 >UniRef50_C2D7I2 Pseudouridine synthase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D7I2_9ACTN Length = 285 Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 71/264 (26%), Positives = 133/264 (50%), Gaps = 31/264 (11%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPG-DVVKVNGQLIEPRE 63 ++RL ++++ +G+ SRR +++ I G V +NGK+ +G +V P D V V+G+ E Sbjct: 24 TMRLQRFLARAGVASRRGSEKLISAGRVCVNGKQVRVLGTKVMPQYDHVTVDGK--EYVL 81 Query: 64 AEDLVLIALNKPVGIVSTTEDGERDNIVDFV---NHSKRVFPIGRLDKDSQGLIFLTNHG 120 D V + LNKP +++T D V + + +FP+GRLD D+ G++ T +G Sbjct: 82 GNDHVYLLLNKPSQVLTTMSDPFGFPCVASLVPCDDYPGLFPVGRLDSDTTGVLLFTTNG 141 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK---------- 170 ++ N++L + K Y+ ++ +T ++ +S G+ + +T C ++ Sbjct: 142 NMGNRLLHPSHHVWKTYVALIEGKLTSSQMQKLSQGIMLEDGMTSPCFIRTITQDEPCTH 201 Query: 171 -------------KEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSG-I 216 A + + + +G N Q++RM + G+ V KL R + + L+ I Sbjct: 202 LDKNHSLFDDMRLNAASSLCELKIHEGRNHQVKRMLQEIGHPVIKLHRFQFGPLCLNAQI 261 Query: 217 PLGEWRDLTDDELIDLFKLIENSS 240 PLG WR T E+ DL + E+++ Sbjct: 262 PLGSWRMCTQQEIHDLETVCEDNT 285 >UniRef50_C4FUC8 Pseudouridine synthase n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FUC8_9FIRM Length = 243 Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 72/234 (30%), Positives = 122/234 (52%), Gaps = 15/234 (6%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIG-DQVKPG-DVVKVNGQLIEPREA 64 +R+ KY++++G SR++ + + Q V +N + + G QV PG D V V GQL+ P + Sbjct: 1 MRIEKYLADTGWGSRKDIKQLLAQKIVTINDQVCSKGGTQVTPGSDCVAVGGQLV-PYQR 59 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKR---VFPIGRLDKDSQGLIFLTNHGD 121 L LNKP GI+S TED ++D++ + +FP+GRLD D+ GL+ LTN+G Sbjct: 60 YHYYL--LNKPEGILSATEDRHHQTVIDWLGEGYQHLDLFPVGRLDIDTTGLLLLTNNGQ 117 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGV------PILGTVTKKCKVKKEAPF 175 L +++L +K Y T+ + + I AG+ + +T + + Sbjct: 118 LAHQLLSPKKKVDKTYTATIRGLVDQADIAAFEAGLDLGDFTSLPAELTVLSQDVDQGTS 177 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDE 228 ++ + +G Q++RM + G EV L R + + L S + G+WR LT+ E Sbjct: 178 QIQVIIQEGKFHQVKRMFQAVGKEVLSLHRLAMGPLRLESDLAHGQWRSLTEQE 231 >UniRef50_B3PMD0 Pseudouridine synthase n=2 Tax=Mycoplasma RepID=B3PMD0_MYCA5 Length = 251 Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 61/230 (26%), Positives = 123/230 (53%), Gaps = 3/230 (1%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPRE 63 + ++++ K IS+ G CSRR+A+ I+Q + +N + AT+G +V D + ++G+ + + Sbjct: 9 EKTIKIQKAISQVGYCSRRQAEELIKQKRIKINHQVATLGQRVLADDQIFIDGKKLNIKP 68 Query: 64 AEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDL 122 + + NKP + T +D E R I +++ + + +GRLD +S G+I +TN GD Sbjct: 69 PK--FYLVFNKPKNTICTLKDPEKRKTIYEYMGLKEYAYSVGRLDFNSTGIILVTNDGDF 126 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLV 182 N I + ++ Y V ++K ++E +++ IL + K APF + ++L Sbjct: 127 ANLIAHPSANIKRVYEVVLEKELSEGDFNYLNSNKVILNGKKSSQSLSKLAPFKYSVSLY 186 Query: 183 QGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDL 232 +G N ++ + VK+L R ++ + + +G+ R L++ E+ +L Sbjct: 187 EGRNHHVKNLFLLVNNYVKELHRVSYGPITDANLKIGKTRHLSESEVQNL 236 >UniRef50_B3E104 Pseudouridine synthase n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3E104_METI4 Length = 256 Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 79/236 (33%), Positives = 128/236 (54%), Gaps = 9/236 (3%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNG-QLIEPREA 64 +R+N+Y++ G+ SRR + + +G + +NG+ T+G ++ D V+++G L+ P++ Sbjct: 11 IRINRYLASCGLGSRRSCEDLVREGRIKVNGQIVRTLGQKISAEDKVEIDGFLLLRPQQK 70 Query: 65 EDLVLIALNKPVGIVSTTED--GERDNIVDFVNHS-KRVFPIGRLDKDSQGLIFLTNHGD 121 + + KP GIV + +D G + I D + S +F +GRLDKDS+GL+ LTN G Sbjct: 71 QYFLFY---KPRGIVCSRKDPFGGK-TIYDLLPSSLHHLFSVGRLDKDSEGLLLLTNDGL 126 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITL 181 L N +L K Y+VT+ E+ + + G+ I G K KV E +I L Sbjct: 127 LANAVLHPRYHFAKTYIVTLCPSFEEKHQKDLLKGMYIEGKRAKADKVIIENKNTLKIVL 186 Query: 182 VQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIE 237 QG+ RQIR M GY+V +L R + ++L + GE R LT+ E+ L+ E Sbjct: 187 SQGMKRQIRTMLSLLGYKVNRLRRVALGPLTLKRMKPGELRSLTEREIKSLYGAFE 242 >UniRef50_A8SYF2 Pseudouridine synthase n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8SYF2_9FIRM Length = 239 Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 71/236 (30%), Positives = 122/236 (51%), Gaps = 17/236 (7%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQV--KPGDVVKVNG-QLIEPRE 63 +RL+K++ E I SR + +YI++G V +NG A D + D +K NG QL + Sbjct: 1 MRLDKFLVEMNIGSRSQVKQYIKKGMVSVNGTNAASSDMKINEDTDTIKYNGKQLCYSKY 60 Query: 64 AEDLVLIALNKPVGIVSTTEDGERDNIVDFVN--HSKRVFPIGRLDKDSQGLIFLTNHGD 121 L LNKP G VS T+D ++D +N ++K +FP+GRLD D++GL+ +TN G Sbjct: 61 RYFL----LNKPAGCVSATKDNVHQTVIDLLNGENTKDLFPVGRLDLDTEGLLIITNDGR 116 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI---LGTVTKKCKV----KKEAP 174 L + +L + K Y +D + ++ I G+ I T+ K+ + Sbjct: 117 LAHHLLSPAHHIAKTYYADIDGYVDDQTISLFKQGIDIGDDTPTLPASLKIIEADRSTGS 176 Query: 175 FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDEL 229 +T+ +G Q++RM + V L+R + N+ ++ +P G +R+LT +E+ Sbjct: 177 SRIELTITEGRFHQVKRMFQAVNMSVTFLKRISMGNLHIADDLPTGSYRELTPEEV 232 >UniRef50_A3ZQL4 Pseudouridine synthase n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZQL4_9PLAN Length = 517 Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 78/232 (33%), Positives = 125/232 (53%), Gaps = 10/232 (4%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKP-GDVVKVNGQLIEPREAE 65 RL+K ++ +GI SRR+ + I++G V ++GK T +G +V P + V+GQ ++ Sbjct: 18 RLHKVLAFAGIDSRRKCEALIQEGRVEVDGKFVTELGMKVDPEHQEILVDGQRLK---FG 74 Query: 66 DLVLIALNKPVGIVSTTED-GERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVN 124 V LNKP G++ST D R ++D V R+F IGRLD+ S+GLI +TN G+L N Sbjct: 75 KRVYYMLNKPPGVLSTNFDPAGRTRVIDMVPQDVRLFTIGRLDRASEGLIVVTNDGELAN 134 Query: 125 KILRAGNDHEKEYLVTV---DKPITEEFI-RGMSAGVPILGTVTKKCKVKKEAPFVFRIT 180 ++ + EK Y V V +P F+ RG+ + V+ K K + + Sbjct: 135 RLAHPRYEIEKTYRVEVAGHPEPDAITFVRRGVHLAEGFVQPVSVVMKRKNKQSTTLEVI 194 Query: 181 LVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDL 232 L +G NR+IRR+ G++V +L+R + + L +P G +R+L E L Sbjct: 195 LDEGKNREIRRLMAKIGHKVLRLKRIAMGPLRLGEMPEGAFRELKSAETKAL 246 >UniRef50_Q12AB3 Pseudouridine synthase n=8 Tax=Proteobacteria RepID=Q12AB3_POLSJ Length = 544 Score = 103 bits (258), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 76/256 (29%), Positives = 137/256 (53%), Gaps = 13/256 (5%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPR-EA 64 + +L+K ++++G+ SR E ++ I +G + +N + A IG +++ GD VKVNG+ I R + Sbjct: 96 TPKLHKVLAQAGLGSRLEMEQLILEGRISVNAEPAHIGQRIQFGDTVKVNGKPIRVRIDP 155 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVF-----PIGRLDKDSQGLIFLTNH 119 +IA +KP G V T +D + N ++F +GRLD +++GL+ LT+ Sbjct: 156 PPPRVIAYHKPSGEVVTHDDPQ--NRPTVFRRLPKLFQGKWQSVGRLDLNTEGLLLLTSS 213 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK----KEAPF 175 G+L NK++ E+EY V V ++ E + + GV + V + ++ + A Sbjct: 214 GELANKLMHPRFGLEREYAVRVLGALSNEEKKRLLEGVTLDDGVAQFSSIEAGGGEGANC 273 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDLFK 234 +R+T+ +G NR++RRM E G+ V +L R R + L G+ G + +L + ++ L Sbjct: 274 WYRVTISEGRNREVRRMFEAVGHAVSRLIRIRYGAMLLPRGLKRGAFVELDERDIWALTN 333 Query: 235 LIENSSSEVKPKAKAK 250 + S S P+ K Sbjct: 334 AVTRSESRADPRGAPK 349 >UniRef50_C0QV84 Pseudouridine synthase n=1 Tax=Brachyspira hyodysenteriae WA1 RepID=C0QV84_BRAHW Length = 359 Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 87/253 (34%), Positives = 128/253 (50%), Gaps = 35/253 (13%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGD---QVKPGDVVKVNGQLIE 60 + +VRL K I ESG SRR ++ I G V +N + I D +VK D V ++ +LI+ Sbjct: 7 EEAVRLVKVILESGFASRRNCEKAIMSGRVRVNNQ--VILDPAYRVKEDDSVSIDRELIK 64 Query: 61 PREAEDLVLIALNKPVGIVSTTED--GERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTN 118 + +AL KP+G+VSTT+ G R F +R+F GRLD +S+G++ +TN Sbjct: 65 RQTKR---YMALYKPIGVVSTTKYLPGRRIITEFFKGIKERLFYAGRLDSESRGIMIITN 121 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVF- 177 G+ N I + K Y VTV+ I E + S G+ I +PF F Sbjct: 122 DGEFANIITHPSYEILKVYDVTVNGKIDSEALLNASKGITIKNVSY--------SPFKFK 173 Query: 178 -----------RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVS----LSG-IPLGEW 221 R+T+ +G NR+IR++ +H GY+V LER + VS +SG + G Sbjct: 174 ILSKGRIQSKIRLTINEGKNREIRKIFDHLGYKVIDLERISVGCVSKYDEVSGTLEAGHI 233 Query: 222 RDLTDDELIDLFK 234 RDLT E+ FK Sbjct: 234 RDLTKKEIDFFFK 246 >UniRef50_C7I043 Pseudouridine synthase n=4 Tax=Proteobacteria RepID=C7I043_THIIN Length = 562 Score = 103 bits (257), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 71/240 (29%), Positives = 129/240 (53%), Gaps = 10/240 (4%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPR- 62 + + +L+K +++SG+ SRRE + I G V +NG+ A +G ++ P D ++VNG++I+ R Sbjct: 169 EDAPKLHKVLAQSGVGSRREMEDLILAGRVSVNGEPAHLGQRILPTDQIRVNGKIIKRRL 228 Query: 63 EAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVN--HSKRVFPIGRLDKDSQGLIFLTNH 119 ++A +KP G V + +D E R + + + +GRLD +++GL+ T Sbjct: 229 RPAQARVLAYHKPTGEVVSFKDPEGRPTVFQHLPKLQGAKWTAVGRLDINTEGLLLFTTS 288 Query: 120 GDLVNKILRAGNDHEKEYLVTV----DKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPF 175 GDL N+++ E+EY V V D +E + G+ G ++ + + A Sbjct: 289 GDLANRLMHPSYGAEREYAVRVLGELDAAARDELLEGVQLGDGPARFLSLEEAGGEGANR 348 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDELIDLFK 234 +R+ + +G NR++RRM E G V +L R R +V L +G+ G++ +L D L+ + Sbjct: 349 WWRVVISEGRNREVRRMFEAVGLTVSRLIRVRYASVVLPAGLRRGDFVEL-DKSLVQALQ 407 >UniRef50_C7NBL1 Pseudouridine synthase n=3 Tax=Leptotrichia RepID=C7NBL1_LEPBD Length = 252 Score = 103 bits (257), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 76/253 (30%), Positives = 131/253 (51%), Gaps = 36/253 (14%) Query: 7 VRLNKYISESGICSRREA-----DRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEP 61 +RL+K+++ SGI +R+E ++ + NVF+ + + ++ D+VK ++I Sbjct: 1 MRLDKFLANSGIGTRKEVKEILKNKKVSVNNVFVKDGKIHVDEE---KDIVKYENKIINY 57 Query: 62 REAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKR---VFPIGRLDKDSQGLIFLTN 118 + V I +NKP G++S TED ++D +N R +FP+GRLD D++GLI LTN Sbjct: 58 KP---FVYIMMNKPAGVISATEDSHHKTVIDLLNDEYRTYDIFPVGRLDIDTEGLILLTN 114 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI-LGTVTKKCKV-------- 169 G L + +L +K+Y V + K ++E+ I+ + G+ + +TK KV Sbjct: 115 DGILSHNLLSPKKHVDKKYYVKITKSLSEDDIKTLENGIKLEENFITKNAKVEIICNNSE 174 Query: 170 KKEAPFVF------------RITLVQGLNRQIRRMCEHFGYEVKKLERTRI-MNVSLSGI 216 K+ F F IT+ +G Q++RM + G EV L+R ++ + + Sbjct: 175 KESEDFDFGENENNKNENSVYITISEGKFHQVKRMFKAVGNEVLYLKRVKMGNLLLDENL 234 Query: 217 PLGEWRDLTDDEL 229 LG +R+LT EL Sbjct: 235 ELGGYRELTQKEL 247 >UniRef50_C6AV89 Pseudouridine synthase n=17 Tax=Rhizobiaceae RepID=C6AV89_RHILS Length = 268 Score = 103 bits (257), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 77/238 (32%), Positives = 122/238 (51%), Gaps = 24/238 (10%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDV----VKVNGQLIEPR 62 V L + +S+ G CSR +A+R I + V ++G+ T+ D D+ + ++G +I Sbjct: 25 VTLPRALSKLGYCSRTQAERLIAENRVAVDGR--TVSDASAWVDLATASISIDGLVIA-- 80 Query: 63 EAEDLVLIALNKPVGIVSTTEDGE-----RDNIVDF-VNHSKRVFPIGRLDKDSQGLIFL 116 AE + + LNKP G+V+T D E D + DF + H + P+GRLDK S+GL+ Sbjct: 81 -AEAKIYLMLNKPRGLVTTRHDPEGRPTVYDCLRDFDIPH---LSPVGRLDKASEGLLLF 136 Query: 117 TNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVP-----ILGTVTKKCKVKK 171 TN + +L K Y V +D+ + +E I M+AG+ + T ++ + Sbjct: 137 TNDTEFAQILLDPVTHVTKTYHVQIDRIMDDEDIAAMTAGIRHDGELLTATAARRLRQGD 196 Query: 172 EAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDEL 229 ++ + L +G NRQIRRM E G E +L R I + L +P G R LT+ EL Sbjct: 197 RNSWI-EVELDEGRNRQIRRMLEALGTECLRLVRVAIGGLELGELPKGAVRALTEPEL 253 >UniRef50_Q87NB7 Ribosomal large subunit pseudouridine synthase B n=17 Tax=Bacteria RepID=RLUB_VIBPA Length = 312 Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 81/302 (26%), Positives = 154/302 (50%), Gaps = 26/302 (8%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVK-PGDVVKVNGQLIEPREA 64 S +L K ++ +G SRRE + I+ G V +NG A +G++++ VV+++G ++ + Sbjct: 2 SEKLQKVLARAGHGSRREIESLIKSGRVSVNGVVAKLGERLEDESSVVRIDGHIVSAKVQ 61 Query: 65 EDLV--LIALNKPVGIVSTTEDGE-RDNIVDFVN--HSKRVFPIGRLDKDSQGLIFLTNH 119 E+++ ++A KP G + T D E R + D + R +GRLD ++ GL+ T Sbjct: 62 EEVICRVLAYYKPEGELCTRHDPEGRRTVFDRLPKIRGSRWISVGRLDANTSGLLLFTTD 121 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKV----KKEAPF 175 G+L N+++ E+EYLV V +TE+ +R + GV + + + V + Sbjct: 122 GELANRLMHPSRQVEREYLVRVFGEVTEQKVRNLVKGVELEDGLARFEDVVYAGGEGMNH 181 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDLFK 234 F + + +G NR++RR+ E V +L+R R ++ L +P G W +L E+ L + Sbjct: 182 TFYVVINEGRNREVRRLWESQECTVSRLKRVRYGDIFLDKKLPRGGWMELDLKEVNYLRE 241 Query: 235 LIE---------NSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGR 285 L+E + S + + + + ++ I+R V + E+ R +++ R +P R Sbjct: 242 LVELRPEKETMLDLSKDNTSRKRERARSQKIRRAVKRHEE------RVSTSKGRSNNPAR 295 Query: 286 KK 287 +K Sbjct: 296 RK 297 >UniRef50_Q2NIZ3 Pseudouridine synthase n=5 Tax=Candidatus Phytoplasma RepID=Q2NIZ3_AYWBP Length = 245 Score = 103 bits (256), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 66/235 (28%), Positives = 125/235 (53%), Gaps = 17/235 (7%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREAED 66 RL K ++ + + SRR+A+ I + + +NGK + +G +V D++ ++ + P Sbjct: 3 RLQKVLAYANVASRRKAEILILEKRIKVNGKIISELGTKVSSSDIITLDDK---PITKAT 59 Query: 67 LVLIALNKPVGIVSTTEDGE-RDNIVDFVNHS--KRVFPIGRLDKDSQGLIFLTNHGDLV 123 LNKP G +ST +D + R ++D + + +R++PIGRLD ++ GL+ +TN GDL Sbjct: 60 YSYFLLNKPNGFLSTAKDKKNRPTVLDLIEEASIQRLYPIGRLDFNTTGLLLITNDGDLT 119 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCK---------VKKEAP 174 K+ KEY V ++ + ++ + G+ I CK + K + Sbjct: 120 QKLTHPSFCIPKEYHVKINACLQKKDLSTFCKGIIIDKKYLAVCKEIDILKISYMPKPST 179 Query: 175 FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDEL 229 ++ ++ + +G NRQ+R+M + GY+V KL+R R +++ + +G +R L E+ Sbjct: 180 WL-KLVITEGKNRQVRKMMQALGYQVLKLKRYRYSFLTIENLTIGAYRPLKIHEI 233 >UniRef50_A2RP35 Pseudouridine synthase n=172 Tax=Firmicutes RepID=A2RP35_LACLM Length = 328 Score = 103 bits (256), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 78/249 (31%), Positives = 133/249 (53%), Gaps = 20/249 (8%) Query: 1 MLPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGD-QV-KPGDVVKVNGQL 58 + + +RL+K+++ESG+ SR E +++G V + G+ G QV K V +GQ+ Sbjct: 81 LCYNKGMRLDKFLAESGLGSRSEVKVLLKKGRVTVAGEIQRDGRFQVDKNSRQVAFDGQI 140 Query: 59 IEPREAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHS---KRVFPIGRLDKDSQGLIF 115 ++ +E LNKP G+VS T+D +V ++ K +FP+GRLDK+++GL+ Sbjct: 141 LDYQE---YYYYLLNKPQGVVSATKDNVFKTVVQLLSEKDFRKDIFPVGRLDKNTEGLLI 197 Query: 116 LTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILG---------TVTKK 166 LTN G L + + + EKEY +D +T+E I + G+ + V K Sbjct: 198 LTNDGALGHDLTQPKKHVEKEYFARIDGKVTDEIINKFAEGLTLKNGEKARPGELFVEKT 257 Query: 167 CKVKKEAPFV--FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRD 223 K ++ +V R+ + +G Q++RM E V L+R R+ N++L S + LG +R Sbjct: 258 YKGDSQSGWVSEIRVIIHEGKFHQVKRMFEAVEMYVLYLKRIRMGNLALDSDLALGAYRP 317 Query: 224 LTDDELIDL 232 LT +E+ +L Sbjct: 318 LTIEEIENL 326 >UniRef50_A9ITY6 Pseudouridine synthase n=6 Tax=Betaproteobacteria RepID=A9ITY6_BORPD Length = 588 Score = 103 bits (256), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 75/234 (32%), Positives = 121/234 (51%), Gaps = 14/234 (5%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLI-EPREAED 66 +L+K ++++GI SRRE + I G V +NG+ A IG +V P D V+VNG+ + P + Sbjct: 124 KLHKVLADAGIGSRREMEELITAGRVSVNGEPAHIGQRVAPSDQVRVNGKPVARPNTKKP 183 Query: 67 LVLIALNKPVG-IVSTTEDGERDNIVDFVN--HSKRVFPIGRLDKDSQGLIFLTNHGDLV 123 +I +KP G IVS + G R ++ + + + +GRLD +++GL+ T GD+ Sbjct: 184 PRVILYHKPAGEIVSHDDPGGRASVFARLPKLRTGKWLSVGRLDLNTEGLLIFTTSGDMA 243 Query: 124 NKILRAGNDHEKEYLVTV----DKPITEEFIRG--MSAGVPILGTVTKKCKVKKEAPFVF 177 N+I+ E+EY V V D + + G + G G + + Sbjct: 244 NRIMHPRYGTEREYAVRVLGEMDDATRKSLVEGIELEDGQAAFGALDYLGGDGSNR--WY 301 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELI 230 R+TL +G NR++RRM E G V +L RTR ++ L + G W +L D L+ Sbjct: 302 RVTLQEGRNREVRRMFESVGVTVSRLIRTRFGDLVLPRTLRRGRWEEL-DSSLV 354 >UniRef50_Q30U38 Pseudouridine synthase n=12 Tax=Epsilonproteobacteria RepID=Q30U38_SULDN Length = 312 Score = 103 bits (256), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 76/257 (29%), Positives = 126/257 (49%), Gaps = 36/257 (14%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNG--KRATIGDQVKPGDVVKVNGQLIEPREA 64 +RLNKYI+ SRREAD+ I+ G V +NG + D + DVV V+G+ + PR+ Sbjct: 1 MRLNKYIAHHSSYSRREADKAIQDGYVRVNGEIQDNPATDIYEGVDVVYVSGKPVTPRDK 60 Query: 65 EDLVLIALNKPVG-IVSTTEDGERDNIVDFV-NHSKRVFPIGRLDKDSQGLIFLTNHGDL 122 +I NKP G +V+ ++ ER I D + K P+GRLD S+GL+ LT+ + Sbjct: 61 --YTVIVYNKPKGELVTKSDPKERKTIYDTLPKEYKHYVPVGRLDYASEGLLLLTDASKV 118 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGV---------------------PILG 161 + ++ + + E+ Y + + +T E M G+ P +G Sbjct: 119 ASALMES--NLERIYKIKIKGEVTSEMEAAMLNGMMLDDATAGGHSHSKVTSMEFKPFIG 176 Query: 162 TVTKKCKVKKEAP--FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLG 219 K++K P + ++ L +G NR++RR HFG ++ L+R + L+ +P G Sbjct: 177 -----YKIQKNEPNYSILKVALSEGKNRELRRFFAHFGTDIVDLKRVSFAEIELNNLPTG 231 Query: 220 EWRDLTDDELIDLFKLI 236 + R L+ E L K + Sbjct: 232 KVRFLSRSEYSALSKFL 248 >UniRef50_A0NV51 Pseudouridine synthase n=2 Tax=cellular organisms RepID=A0NV51_9RHOB Length = 520 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 86/270 (31%), Positives = 134/270 (49%), Gaps = 17/270 (6%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATI-GDQVKPGDVVKVNGQLIEPR 62 D R+ K ++ G+CSRREA+ +IE G V LNGK T V P D V V+GQ + R Sbjct: 100 DRGERIAKVMARVGLCSRREAEVWIENGRVELNGKLLTTPAVTVTPDDKVVVDGQPLPMR 159 Query: 63 EAEDLVLIALNKPVGIVSTTEDGE-RDNIVD-FVNHSKRVFPIGRLDKDSQGLIFLTNHG 120 E L L +KP G+V+T +D E R + + + RV +GRLD +++GL+ LTN G Sbjct: 160 ERTRLWLY--HKPRGLVTTNKDPEGRPTVFERLPDDLPRVLTVGRLDINTEGLLLLTNDG 217 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKV---KKEAPFVF 177 L + + Y V +T+ + + G+ I G + + K++ V+ Sbjct: 218 GLARVLELPATGWLRRYRVRAFGKVTQPDLDTLKDGIAIEGVLYGAIEATLDKEQGNNVW 277 Query: 178 -RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF--K 234 + L +G NR+++R+ EH G V +L R L +P G+ R++ L D Sbjct: 278 MTVGLREGKNREVKRVLEHLGLAVNRLIRLSYGPFQLMDLPEGDVREIRGRVLRDQLGDA 337 Query: 235 LIENSSSEV------KPKAKAKPKTAGIKR 258 L E + ++ PK +A+ K AG KR Sbjct: 338 LAEEAGADFDAPIFHAPKPEAEKKPAGAKR 367 >UniRef50_Q5F8V3 Pseudouridine synthase n=21 Tax=Proteobacteria RepID=Q5F8V3_NEIG1 Length = 350 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 75/240 (31%), Positives = 127/240 (52%), Gaps = 10/240 (4%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAEDL 67 RL K ++ SG+ SRRE + +I G V +NGK A +GD+V P D V V G +I+ + A+ L Sbjct: 99 RLQKVLAASGVGSRREMEEWINNGWVTVNGKTAQLGDKVTPDDHVTVKGSIIKLKWADRL 158 Query: 68 --VLIALNKPVGIVSTTEDGERDNIVDFVNH--SKRVFPIGRLDKDSQGLIFLTNHGDLV 123 +++ + IVS + R +I D + S R IGRLD ++ GL+ LT G+LV Sbjct: 159 PRIILYYKQEGEIVSRDDPQGRVSIFDRLPQAASSRWVAIGRLDINTSGLLILTTSGELV 218 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMS-AGVPILGTVTKKCKVKKE----APFVFR 178 + + E+EY V V +T E +R ++ GV + + K ++ ++ A + Sbjct: 219 QRFAHPSFEVEREYAVRVLGGLTTEQMRSLTEEGVMLEDGLAKVERIYEQGGEGANKWYN 278 Query: 179 ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSG-IPLGEWRDLTDDELIDLFKLIE 237 I + +G NR++RR+ E G V +L R + L + G++ +L E+ ++ K + Sbjct: 279 IVIKEGRNREVRRIFESQGLTVSRLVRVAFGPIGLPNRLKRGQFYELNPAEVANILKWAD 338 >UniRef50_B4RM91 Pseudouridine synthase n=8 Tax=Betaproteobacteria RepID=B4RM91_NEIG2 Length = 416 Score = 102 bits (254), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 75/240 (31%), Positives = 127/240 (52%), Gaps = 10/240 (4%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAEDL 67 RL K ++ SG+ SRRE + +I G V +NGK A +GD+V P D V V G +I+ + A+ L Sbjct: 165 RLQKVLAASGVGSRREMEEWINNGWVTVNGKTAQLGDKVTPDDHVTVKGSIIKLKWADRL 224 Query: 68 --VLIALNKPVGIVSTTEDGERDNIVDFVNH--SKRVFPIGRLDKDSQGLIFLTNHGDLV 123 +++ + IVS + R +I D + S R IGRLD ++ GL+ LT G+LV Sbjct: 225 PRIILYYKQEGEIVSRDDPQGRVSIFDRLPQAASSRWVAIGRLDINTSGLLILTTSGELV 284 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMS-AGVPILGTVTKKCKVKKE----APFVFR 178 + + E+EY V V +T E +R ++ GV + + K ++ ++ A + Sbjct: 285 QRFAHPSFEVEREYAVRVLGGLTTEQMRSLTEEGVMLEDGLAKVERIYEQGGEGANKWYN 344 Query: 179 ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSG-IPLGEWRDLTDDELIDLFKLIE 237 I + +G NR++RR+ E G V +L R + L + G++ +L E+ ++ K + Sbjct: 345 IVIKEGRNREVRRIFESQGLTVSRLVRVAFGPIGLPNRLKRGQFYELNPAEVANILKWAD 404 >UniRef50_C4V2S0 Pseudouridine synthase n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V2S0_9FIRM Length = 290 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 75/236 (31%), Positives = 121/236 (51%), Gaps = 10/236 (4%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRATI--GDQVKPGDVVKVNGQLIEPREAE 65 RL K IS +G SRR A+ I G V ++G T G + V+G I R E Sbjct: 4 RLQKIISNAGAASRRAAEALIRAGRVTVDGLPVTALGGKYDAARHEIAVDGTPI--RRNE 61 Query: 66 DLVLIALNKPVGIVSTT-EDGERDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTNHGDLV 123 I L+KP G +ST +D R ++D + H R++P+GRLD D++GL+ +TN G + Sbjct: 62 RRFYILLHKPRGCLSTAYDDRGRRTVLDLLPHFPARLYPVGRLDADTEGLLIITNDGAMT 121 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK---KEAPFVFRIT 180 +L + +K Y V +TE+ + + G+ + T +++ +E T Sbjct: 122 QGLLHPRFEIDKVYRAEVTGNVTEDGLTALRNGILLDDGRTAPARLRVLHREGERTVVET 181 Query: 181 LV-QGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 ++ +G RQ+RRM G V++L R R ++L G+ G +R LT DE+ +L K+ Sbjct: 182 IIHEGRKRQVRRMFAAIGCRVQRLCRVRFAMLTLDGVSCGSFRHLTSDEIHELKKI 237 >UniRef50_D2B9T7 Pseudouridine synthase n=18 Tax=Actinobacteria (class) RepID=D2B9T7_STRRD Length = 621 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 76/243 (31%), Positives = 127/243 (52%), Gaps = 11/243 (4%) Query: 2 LPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLI 59 +PD VRL K ++++G+ SRR + I G V ++G+ G +V P V+ V+G+ + Sbjct: 380 VPDG-VRLQKVLAQAGVASRRACEDMIGDGRVTVDGQVVRRFGARVDPAKQVIHVDGKRL 438 Query: 60 EPREAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFV-NHSKRVFPIGRLDKDSQGLIFLT 117 DLV +A+NKP+G+VST D + R ++ DFV + ++R+F +GRLD +++GLI LT Sbjct: 439 P--TMPDLVYLAINKPIGVVSTMSDPDGRPSLADFVADRTERLFHVGRLDTETEGLILLT 496 Query: 118 NHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKV----KKEA 173 N G+L N++ +K+Y V I + R + G+ + + K + Sbjct: 497 NDGELANRLTHPSYGVQKKYWAKVPGRIERDLGRRLKKGIELEDGIAKADSFTLVQEHGQ 556 Query: 174 PFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF 233 + + L +G +RRM E G+ V L R V L + G R LT E+ +L+ Sbjct: 557 QALVEVVLHEGRKHIVRRMLEEVGHPVIDLARIEFGPVKLGRLKPGTVRALTVKEVGELY 616 Query: 234 KLI 236 + Sbjct: 617 AAV 619 >UniRef50_A5TW76 Pseudouridine synthase n=11 Tax=Fusobacterium RepID=A5TW76_FUSNP Length = 226 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 65/229 (28%), Positives = 126/229 (55%), Gaps = 8/229 (3%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNG-KRATIGDQV-KPGDVVKVNGQLIEPREA 64 +RL+K++ E GI SR+E + I + +NG + D + + D+++ NG+ +E +E Sbjct: 1 MRLDKFLVECGIGSRKEVKKLISNDEITVNGFNDISAKDNIDENSDIIEYNGEKLEYKEF 60 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNH---SKRVFPIGRLDKDSQGLIFLTNHGD 121 ++ NK G ++ TED + + ++D + K + P+GRLDKD++GL+ TN G Sbjct: 61 RYYIM---NKKAGYITATEDFKENTVMDLLPEWVIRKDLAPVGRLDKDTEGLLLFTNDGK 117 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITL 181 L +++L N +K Y + ++ I ++ I + GV I +T+ KV+K + +T+ Sbjct: 118 LNHRLLSPKNHIDKVYYIEIENNILDKDILKLEQGVDIGNYITQPAKVEKISDNKIYLTI 177 Query: 182 VQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELI 230 +G Q+++M E +V L+R + L + LGE +++ +++I Sbjct: 178 KEGKFHQVKKMLEAVNNKVCYLKRVSFGKLKLDDLALGEVKEVNLEDII 226 >UniRef50_A1VDC0 Pseudouridine synthase n=3 Tax=Desulfovibrio vulgaris RepID=A1VDC0_DESVV Length = 292 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 87/245 (35%), Positives = 128/245 (52%), Gaps = 14/245 (5%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEP 61 D RLNK +S +G+CSRR+AD +I G V +NG+ T +G +V P D ++V G+L+ Sbjct: 43 DGGTRLNKALSGAGVCSRRQADTFIAGGKVRVNGEVVTEMGRRVFPATDRIEVEGRLLAC 102 Query: 62 REA---EDLVLIALNKPVGIVSTTEDGE-RDNIVDFVN---HSKRVFPIGRLDKDSQGLI 114 EA + LNKPV +VST D + R I+D + + R++P+GRLD S+GL+ Sbjct: 103 GEALNRHRHTYVMLNKPVQVVSTVRDPQGRTTILDILPDDLKTVRLYPVGRLDFFSEGLL 162 Query: 115 FLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI-----LGTVTKKCKV 169 LT+ GDL +++ K Y V V + I + M +G+ + + V Sbjct: 163 LLTDDGDLTHRLTHPKWHLPKYYRVLVREDIPPAALTAMRSGMTLAEGDRVAPVEAYIID 222 Query: 170 KKEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDEL 229 + E + L QG+NRQIRRMC G V +L R + V L + G R L D E+ Sbjct: 223 RSEYGVELEMVLHQGINRQIRRMCRDLGLTVLRLLRIQQGPVELGNLSRGSCRRLEDHEV 282 Query: 230 IDLFK 234 L K Sbjct: 283 KALRK 287 >UniRef50_C0EB54 Pseudouridine synthase n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EB54_9CLOT Length = 248 Score = 101 bits (252), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 71/219 (32%), Positives = 118/219 (53%), Gaps = 18/219 (8%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGD-QVKP-GDVVKVNGQLIEPREA 64 +R++K++S I +R +A + G V +NG D +V P GD ++V+G++ +E Sbjct: 3 IRIDKFLSTQAIATRSQAKEMLRAGRVLVNGTPVKAADLKVDPEGDEIRVDGRVYGYQEH 62 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKR---VFPIGRLDKDSQGLIFLTNHGD 121 + + LNKP G+VS T+D ++D V R +FP GRLD+D+ G + +T+ G+ Sbjct: 63 ---LYLMLNKPQGVVSATDDKVHRTVLDLVPPELRRRGLFPAGRLDRDTVGFVLITDDGE 119 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKK-------EAP 174 + IL + K Y +D PI E + ++ GV +LG T KC+ + E P Sbjct: 120 FAHNILSPRHHVPKTYEAGLDGPIGENELSVLAQGV-VLGDGT-KCRPAELTVLQSGERP 177 Query: 175 FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL 213 + +I +V+G QI+RM G V L+RT+I ++L Sbjct: 178 LI-QIVIVEGRYHQIKRMFAAVGRRVLTLKRTKIGGLAL 215 >UniRef50_A6DMJ6 Pseudouridine synthase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DMJ6_9BACT Length = 239 Score = 101 bits (252), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/233 (31%), Positives = 117/233 (50%), Gaps = 11/233 (4%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQV--KPGDVVKVNGQLIEPR 62 + +RL+K I++ +R EA R ++ G V +N +G DVV +G+++E R Sbjct: 6 AKIRLDKMIAKCTDLTRSEATRALKNGFVKVNDIPQKVGKSTIDLANDVVTFDGEVLEYR 65 Query: 63 EAEDLVLIALNKPVGIVSTTEDGERDNIVDFVN---HSKRVFPIGRLDKDSQGLIFLTNH 119 E + LNKP G V +D ++D + S+ F GRLD D+ GL+ LT+ Sbjct: 66 ET---IYFMLNKPKGYVCAAKDERLKTVLDLLPPALASREPFSCGRLDIDTTGLVILTDD 122 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGT--VTKKCKVKKEAPFVF 177 G + I EK YLV +++E +R + GV + G +T K++K + Sbjct: 123 GTWAHGITSPKRKCEKSYLVGSVSELSDEDMRNLEQGVYLDGDDKITAPAKIEKIDEKTY 182 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDEL 229 R+ + +G Q++RM E VK L R +I +SL + G WRDLT +E+ Sbjct: 183 RLKITEGRYHQVKRMFEAVDNMVKSLHREQIGGLSLDDDLDEGNWRDLTAEEV 235 >UniRef50_P45104 Ribosomal large subunit pseudouridine synthase B n=177 Tax=Gammaproteobacteria RepID=RLUB_HAEIN Length = 357 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 77/270 (28%), Positives = 137/270 (50%), Gaps = 18/270 (6%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQ--VKPGDVVKVNGQLIEPREAE 65 +L K ++ +G SRRE + I G V + GK AT+GD+ V G V+++GQ+I + Sbjct: 77 KLQKVLARAGQGSRREIETMIAAGRVSVEGKIATLGDRIDVHSGVKVRIDGQIINLSHTQ 136 Query: 66 DLV--LIALNKPVGIVSTTEDGE-RDNIVDFVNH--SKRVFPIGRLDKDSQGLIFLTNHG 120 + ++ KP G + T D E R + D + R +GRLD ++ GL+ T G Sbjct: 137 KEICRVLMYYKPEGELCTRSDPEGRATVFDRLPRLTGSRWIAVGRLDINTSGLLLFTTDG 196 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPF----V 176 +L N+++ + E+EY V V + + + + GV + + ++K Sbjct: 197 ELANRLMHPSREVEREYSVRVFGQVDDAMLARLRKGVQLEDGLANFKEIKFTGGVGINQW 256 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDELIDLFKL 235 + +TL++G NR++RR+ E G +V +L R R N+ L G+P G W ++ D E ++ + Sbjct: 257 YDVTLMEGRNREVRRLWESQGIQVSRLIRIRYGNIKLMKGLPRGGWEEM-DLENVNYLRE 315 Query: 236 IENSSSEVKPK-----AKAKPKTAGIKRPV 260 + +E + K A +PK+ I++ V Sbjct: 316 LVGLPAETETKLDVKQASRRPKSGQIRKAV 345 >UniRef50_Q6G8H4 Pseudouridine synthase n=61 Tax=Firmicutes RepID=Q6G8H4_STAAS Length = 231 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 68/228 (29%), Positives = 120/228 (52%), Gaps = 8/228 (3%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKP-GDVVKVNGQLIEPREA 64 +R++K+++ G+ +R E + +++G V +N + + ++P D + V G+LIE E Sbjct: 1 MRIDKFLANMGVGTRNEVKQLLKKGLVNVNEQVIKSPKTHIEPENDKITVRGELIEYIEN 60 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKR--VFPIGRLDKDSQGLIFLTNHGDL 122 V I LNKP +S TED ++D + + +F +GRLDKD++GL+ +TN GD Sbjct: 61 ---VYIMLNKPKDYISATEDHHSKTVIDLIPEYQHLNIFTVGRLDKDTEGLLLITNDGDF 117 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLV 182 ++++ K+Y V PITE+ I+ GV + K + +T+ Sbjct: 118 NHELMSPNKHVSKKYEVISANPITEDDIQAFKEGVTLSDGKVKPAILTYIDNQTSHVTIY 177 Query: 183 QGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDEL 229 +G Q++RM EV L R +I ++ L S + GE+R LT+++ Sbjct: 178 EGKYHQVKRMFHSIQNEVLHLRRIKIADLELDSNLDSGEYRLLTENDF 225 >UniRef50_UPI0001C37AA4 16s pseudouridylate synthase n=2 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37AA4 Length = 255 Score = 101 bits (251), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 75/240 (31%), Positives = 122/240 (50%), Gaps = 12/240 (5%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGD-QVKPG-DVVKVNGQLIEPREA 64 +RL+K+ISE +R + +G+V +NG D ++ G D V V G I + Sbjct: 4 IRLDKFISERTEYTRSQIKSLCAKGSVTVNGSPVKRSDTKIDTGADDVTVCGNAIS---S 60 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFV---NHSKRVFPIGRLDKDSQGLIFLTNHGD 121 E I LNKP G VS+T+D + + ++ V SK +FP GRLDKDS G + +T+ G Sbjct: 61 ERFRYILLNKPKGYVSSTDDKDGETVIKLVPPEMRSKGLFPAGRLDKDSTGALLITDDGA 120 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPIL-GTVTKKCKVKK--EAPFVFR 178 L ++I N K Y + +P +E++ + G+ + G CKV+K A + Sbjct: 121 LAHRICSPNNHISKIYAAELSRPFEQEYVEKFAKGIVLANGEACSPCKVQKAENADNLAF 180 Query: 179 ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDELIDLFKLIE 237 + L +G+ Q++RM G V+ L+R I + L +PLG+ L ++ +F I+ Sbjct: 181 VELHEGMYHQVKRMFAAVGNHVENLKRISIGGLILPKDLPLGKCMYLLPKDIEQMFTKID 240 >UniRef50_C1QDI4 Pseudouridine synthase n=1 Tax=Brachyspira murdochii DSM 12563 RepID=C1QDI4_9SPIR Length = 381 Score = 101 bits (251), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 86/253 (33%), Positives = 127/253 (50%), Gaps = 35/253 (13%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGD---QVKPGDVVKVNGQLIE 60 + +VRL K I ESG SRR ++ I G + +N + I D +VK D V ++ +LIE Sbjct: 7 EEAVRLVKVILESGFASRRNCEKAIMSGRIRVNNE--VILDPAYRVKESDSVSIDRKLIE 64 Query: 61 PREAEDLVLIALNKPVGIVSTTED--GERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTN 118 + +AL KP+G+VSTT+ G R F +R+F GRLD +S+G++ +TN Sbjct: 65 RQRKR---YMALYKPLGVVSTTKYLPGRRIITEFFKGIKERLFYAGRLDSESRGIMIITN 121 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVF- 177 G+ N I + K Y VTV+ I E + S G+ I +PF F Sbjct: 122 DGEFANIITHPSYEILKVYDVTVNGKIDSEKLYEASKGITIKNITY--------SPFKFK 173 Query: 178 -----------RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVS----LSG-IPLGEW 221 R+T+ +G NR+IR++ ++ GY+V LER + VS SG + G Sbjct: 174 ILSKGRVQSKIRLTINEGKNREIRKIFDYLGYKVIDLERISVGCVSKYDETSGTLEAGHI 233 Query: 222 RDLTDDELIDLFK 234 RDLT E+ FK Sbjct: 234 RDLTKKEIEFFFK 246 >UniRef50_Q1RJR2 Uncharacterized RNA pseudouridine synthase RBE_0321 n=15 Tax=Rickettsia RepID=Y321_RICBR Length = 229 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 113/223 (50%), Gaps = 7/223 (3%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRATI-GDQVKPGDVVKVNGQLIEPREAED 66 RL K IS +GICSRR+A++ I G V +NG T V + V+V+G LI + Sbjct: 3 RLAKLISNAGICSRRDAEKLILDGQVKVNGIIVTSPATNVDTDNQVEVSGSLITSSQKSR 62 Query: 67 LVLIALNKPVGIVSTTEDG-ERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNK 125 L + KPVG+++T +D R + + + RV IGRLD +S+GL+ LTN+GDL + Sbjct: 63 LWIYY--KPVGLITTHKDPLSRKTVFEQLTGLPRVISIGRLDLNSEGLLLLTNNGDLARQ 120 Query: 126 ILRAGNDHEKEYLVTV---DKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLV 182 + ++ Y V P+ + + + + K K + L Sbjct: 121 FELPSSKLKRVYHVRAYGNPDPLLKSNYKNLEIDGIFYNPQSIKLLRKNSTNSWLEVILF 180 Query: 183 QGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLT 225 +G NR+IRR+ EHFG +V KL RT + L + E+R++T Sbjct: 181 EGKNREIRRIFEHFGLKVNKLIRTEYGDFKLDNLKPNEYREVT 223 >UniRef50_A9AXM1 Pseudouridine synthase n=3 Tax=Bacteria RepID=A9AXM1_HERA2 Length = 728 Score = 100 bits (250), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 83/254 (32%), Positives = 141/254 (55%), Gaps = 15/254 (5%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGK-RATIGDQVKPG-DVVKVNGQLIEPREAE 65 RL+K+++ +G+ SRR + + G V +NG+ + +G Q+ P D ++V+G+ I P Sbjct: 3 RLHKFLARAGVDSRRACEELMLAGRVSVNGRVQRELGTQIDPDKDDIRVDGEQITP--PT 60 Query: 66 DLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVN 124 +L + L+KP +++T D E R + D V R+FP+GRLD DS+GL+ LT+ GDL Sbjct: 61 ELHYVLLHKPSSVMTTLHDPEGRQTVADLVKSHNRLFPVGRLDYDSEGLLLLTDDGDLTF 120 Query: 125 KILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK-----KEAPFVFRI 179 ++ + EKEY +++ + E +R GV + T ++ + +V R+ Sbjct: 121 RLTHPSFEVEKEYQALLNQTPSVEQLREWRNGVELDDGKTAPAWIELLNETADGTWV-RV 179 Query: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENS 239 + +G NRQIRR+ E G EV++L R R ++L + G+WR LT E ID ++ Sbjct: 180 VIHEGRNRQIRRVAEALGLEVRRLIRLREGPLTLGELQAGQWRALTPTE-IDRLRMHGKQ 238 Query: 240 S---SEVKPKAKAK 250 S + V+P+ A+ Sbjct: 239 SKAWTPVRPQENAE 252 >UniRef50_C9LMR9 Pseudouridine synthase n=1 Tax=Dialister invisus DSM 15470 RepID=C9LMR9_9FIRM Length = 239 Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 73/238 (30%), Positives = 125/238 (52%), Gaps = 14/238 (5%) Query: 8 RLNKYISESGICSRREADRYI-EQGNVFLNGKRATIGDQVK-PGDVVKVNGQLIEPREAE 65 RL K +S +G+CSRR+A+ I +G + D ++ G++++P E Sbjct: 4 RLQKILSHAGVCSRRKAEELILAGRVRVNGRVVRELGTEADVCTDKIEALGEIVKP---E 60 Query: 66 DLVLIALNKPVGIVSTTED-GERDNIVDFVNHSK-RVFPIGRLDKDSQGLIFLTNHGDLV 123 L +KP ++++ D R ++D+ + RVFP+GRLD S+GL+ +TN G L Sbjct: 61 PLRYYLFHKPDCVITSVSDPAGRRTVMDYFRRVRERVFPVGRLDYHSEGLLLVTNDGQLD 120 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK------KEAPFVF 177 + ++ +KEY V V +E+ + M GV I VT C+++ ++ Sbjct: 121 FILTHPCHEVQKEYEVVVRGKFSEKLAKKMEKGVKIDSGVTAPCEIEVLGYDAEKNKTRL 180 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 R+ L +G NR+IR+M E F Y V +L+R R ++L + G++R LT E+ L++L Sbjct: 181 RMVLHEGKNREIRKMMEIFHYPVFELKRIRYSFLTLD-VNRGQYRRLTAAEVKKLYEL 237 >UniRef50_B8DUD9 Pseudouridine synthase n=8 Tax=Bifidobacterium RepID=B8DUD9_BIFA0 Length = 257 Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 78/239 (32%), Positives = 129/239 (53%), Gaps = 15/239 (6%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIE--PR 62 +RL K ++++G SRR+ + I G V ++G+ T +G +V P V+V+G I PR Sbjct: 19 IRLQKLLAQAGFGSRRKCEEMITDGRVEVDGELVTELGTRVDPKRQQVRVDGSRIRLNPR 78 Query: 63 EAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFV-NHSKRVFPIGRLDKDSQGLIFLTNHG 120 + +ALNKP ++ST +D + R + D V + +R+F +GRLD DS+GLI +TN G Sbjct: 79 H----ITLALNKPRKVLSTMDDPKGRYTLRDIVGDKYERIFHMGRLDYDSEGLILMTNDG 134 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGM-SAGVPILGTVTK--KCKV--KKEAPF 175 +L ++ + EK Y+ T++ ++ R + GV + K C + Sbjct: 135 ELSQHVMHPKYEVEKTYIATLEGHMSGTVCRRLVRTGVQLDDGWIKLDHCSIIDSNRDQT 194 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFK 234 + ++ L G NR +RR+ G+ VK+L RT+I + L I G +R L+ DE+ L K Sbjct: 195 IVKVVLHSGRNRIVRRIFGAIGFPVKRLVRTQIGPIKLGDIKSGSYRVLSQDEVRALSK 253 >UniRef50_B0RHF4 Pseudouridine synthase n=3 Tax=Actinobacteria (class) RepID=B0RHF4_CLAMS Length = 291 Score = 100 bits (249), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 80/252 (31%), Positives = 127/252 (50%), Gaps = 12/252 (4%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIE 60 P + VRL K ++ +G+ SRR + I G V +NG+ T G ++ P D V V+ Q ++ Sbjct: 21 PVAGVRLQKVMAAAGVASRRVCEDMIAAGRVTVNGETVTEPGRRIDPDVDEVAVDDQAVQ 80 Query: 61 PREAEDLVLIALNKPVGIVSTTED--GERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTN 118 ++ ++ LNKPVGI S+ D G D +R+F +GRLD ++ GL+ LTN Sbjct: 81 LDTSKRYLM--LNKPVGIYSSLRDERGRPDLREFTEEFEERLFNVGRLDAETSGLLILTN 138 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGV-----PILGTVTKKCKVKKEA 173 GDL + + K Y+ V +T + I+ ++ GV PI + + Sbjct: 139 DGDLAHVLAHPSFGVLKTYIAKVTGRVTPQTIQRLTQGVDLEDGPIQADRARILSGGGDQ 198 Query: 174 PFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF 233 V ITL G NR +RRM + G+ V++L R + + L + +G RDLT DEL L Sbjct: 199 TLV-EITLHSGRNRIVRRMLDEVGHPVEELVRRQFGPLHLGSLGVGRVRDLTSDELGQLL 257 Query: 234 KLIENSSSEVKP 245 + + ++ P Sbjct: 258 TISREARAQAGP 269 >UniRef50_C1FD45 Pseudouridylate synthase n=1 Tax=Micromonas sp. RCC299 RepID=C1FD45_9CHLO Length = 334 Score = 100 bits (248), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 74/238 (31%), Positives = 115/238 (48%), Gaps = 20/238 (8%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREA 64 S R++K I+ CSRREA+R I + V +NG G + + +++ ++ + Sbjct: 88 SQQRISKIIALREFCSRREAERLISRSQVVVNGVLIHQGSKAECDSEIQL-AEIGDQVWF 146 Query: 65 EDLVLIALNKPVGIVSTT-EDGERDNIVDFV-----------------NHSKRVFPIGRL 106 + +ALNKP G VS GE + + N + ++ GRL Sbjct: 147 QSKSTVALNKPRGYVSNLPSHGEVEACSLLITTTGSHIHSSKWSSRTENDNGQLNVCGRL 206 Query: 107 DKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKK 166 DK+S+GL+ L+ G L +++ AG K YLV VDK +T+ + ++ L V + Sbjct: 207 DKNSRGLLVLSQDGVLAREVI-AGVFVSKTYLVEVDKMVTQNDLDRLNGPCKFLTDVIRP 265 Query: 167 CKVKKEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDL 224 +V+ AP + L +G NRQIRRMCE G V L R R+ L +P G WR + Sbjct: 266 IRVRLLAPTLLEFVLREGKNRQIRRMCEQMGLIVVDLFRVRLGKSELGSLPEGSWRTM 323 >UniRef50_C1DA59 Pseudouridine synthase n=6 Tax=Betaproteobacteria RepID=C1DA59_LARHH Length = 703 Score = 100 bits (248), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 77/239 (32%), Positives = 131/239 (54%), Gaps = 11/239 (4%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREA 64 + +RL K ++ +G+ SRR+ D + G V +NG A +G +V+PGD V+V+ + + R Sbjct: 451 NEMRLQKALALAGLGSRRDMDELVAAGRVSINGAVAELGARVRPGDKVRVDSKPVLIRWP 510 Query: 65 EDLV-LIALNKPVGIVSTTEDGE-RDNIVDFV--NHSKRVFPIGRLDKDSQGLIFLTNHG 120 + L +I +K G + T +D E R + D + S + IGRLD ++ GL+ T G Sbjct: 511 DRLPRVIVYHKQEGEIVTRDDPEGRTTVFDRLPQTRSSKWVAIGRLDVNTSGLLIFTTSG 570 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGV-----PILGTVTKKCKVKKEA-P 174 DL N++ + E+EY V V +T E ++ +AGV P ++ K+++ Sbjct: 571 DLANRMTHPSFEVEREYAVRVLGKLTPEQMKETTAGVQLDDGPASFQFIREDDDKEDSVN 630 Query: 175 FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDELIDL 232 +R+ + +G NR++RRM EHFG V +L R R V+L S + G++ +L + E+ L Sbjct: 631 HWYRVGIREGRNREVRRMFEHFGLTVSRLMRVRFGIVTLPSRLKRGQFYELNELEVSKL 689 >UniRef50_Q04F57 Pseudouridine synthase n=2 Tax=Oenococcus oeni RepID=Q04F57_OENOB Length = 237 Score = 100 bits (248), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 121/230 (52%), Gaps = 11/230 (4%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREAED 66 RL K I+++G+ SRR+A+ I G V +NGK T +G +V D+V V+ + I E Sbjct: 6 RLQKRIAQAGVASRRKAEEMIVNGQVKVNGKIITKLGKKVSSDDIVYVDNKKINE---ES 62 Query: 67 LVLIALNKPVGIVSTTEDG-ERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNK 125 LNKP G VS+ + ++++ + R+F +GRLD+D+ G++ LTN G+L K Sbjct: 63 FEYYLLNKPAGYVSSNRSYPNQPSVIELIKTKTRIFSVGRLDQDTTGVLLLTNDGELTQK 122 Query: 126 ILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTV-----TKKCKV-KKEAPFVFRI 179 + + ++ Y V + E+ I ++ + G + + KV +K + I Sbjct: 123 LTHPKHRIKRTYAAWVKGIVNEDEIEQLTKPIRFDGEIYFPQAARILKVDQKRQESLIEI 182 Query: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDEL 229 T+ +G N +I+++ + G+ V KL R +++ + G+ R L++ E+ Sbjct: 183 TIAEGKNHEIKKILDFIGHPVIKLNRDMFDGITIGNLKKGQHRALSEQEV 232 >UniRef50_B1ZYI5 Pseudouridine synthase n=2 Tax=Bacteria RepID=B1ZYI5_OPITP Length = 188 Score = 100 bits (248), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 93/187 (49%), Gaps = 21/187 (11%) Query: 68 VLIALNKPVGIVS--TTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNK 125 +L AL+KP G++S T E G R + V+P+GRLD DS+GL+ L++ L + Sbjct: 1 MLCALHKPYGVLSQFTPEPGSRWRTLAEFGLPPAVYPLGRLDADSEGLLLLSDEPGLNTR 60 Query: 126 ILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAP----------- 174 +L H +EY V V++ T+ + + GV I T+ C ++ P Sbjct: 61 LLNPDQAHRREYWVQVERVPTDAALAQLQRGVKIGDYATRPCAARRLDPAPTLPPRDPPI 120 Query: 175 --------FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTD 226 + L++G NRQ+RRM G+ +L R RI + +L + +G+WR+LT Sbjct: 121 RARKNVPDCWLALELIEGKNRQVRRMTAAIGHPTLRLVRVRIGDFALGKLAVGQWRELTA 180 Query: 227 DELIDLF 233 DE +F Sbjct: 181 DERKSVF 187 >UniRef50_B2UKZ1 Pseudouridine synthase n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UKZ1_AKKM8 Length = 230 Score = 100 bits (248), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 72/235 (30%), Positives = 113/235 (48%), Gaps = 17/235 (7%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLI--EPREA 64 +RL+ +S G CSRREA +I++ ++ GK + P D V+ G L+ EP E Sbjct: 1 MRLDALLSRYGYCSRREAPGWIKRHSITFKGKPCS-----SPTDKVQAEGILLDGEPVEF 55 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKR-----VFPIGRLDKDSQGLIFLTNH 119 D + AL KP G + +DGE + I D + R V +GRLDK++ GL+ LT+ Sbjct: 56 PDGLYAALYKPEGYTCSHDDGEGNLIYDLLPFQWRHRNPAVSSVGRLDKETSGLLLLTDD 115 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCK---VKKEAPFV 176 G ++++ + K Y ++ I E + ++G L T+ C ++ P Sbjct: 116 GKFIHRMTSPRHHVAKVYEAVTEEDIPTEAVELFASGTLTLNGETRPCAPALLEIREPRR 175 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPL--GEWRDLTDDEL 229 +TL +G Q+RRM G V L R I ++ L + L GEW + D L Sbjct: 176 ALLTLTEGKYHQVRRMLAAVGAPVLSLCRVSIGSLHLDSLNLKPGEWAPIRPDAL 230 >UniRef50_Q9ZJG0 Uncharacterized RNA pseudouridine synthase jhp_1352 n=37 Tax=Epsilonproteobacteria RepID=YE59_HELPJ Length = 262 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 74/257 (28%), Positives = 131/257 (50%), Gaps = 24/257 (9%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAE 65 S+R+N++++ SRREA++ + +G V +N + A + VK D V ++ +LI+P + + Sbjct: 5 SLRINQFLAHYTKHSRREAEKLVLEGRVKINHEHAKLASVVKENDKVFLDKRLIKPLKNK 64 Query: 66 DLVLIALNKPVG-IVSTTEDGERDNIVDFVNHSKRVF-PIGRLDKDSQGLIFLTNHGDLV 123 ++ +KP G +VS + +R I + + F P+GRLD S+G++ L++ +V Sbjct: 65 KFSVLVYHKPKGELVSKADPLKRHVIYESLEKKYAHFAPVGRLDFASEGVLLLSDSKAVV 124 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK------KEAPFV- 176 + ++ A + EKEYLV + +T E M G+ L TK K + APF+ Sbjct: 125 SALMHA--NLEKEYLVKIQGFVTREMENAMQEGLK-LENATKGAHQKTPIKSMEFAPFIG 181 Query: 177 ------------FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDL 224 R+ + +G NR++RR F V L R R V+L+ +P+G+ R L Sbjct: 182 YEIIKNHAKYSKLRVIINEGKNRELRRFFAFFNAGVLDLRRVRYGFVNLNALPVGKARFL 241 Query: 225 TDDELIDLFKLIENSSS 241 E +L + N ++ Sbjct: 242 NRQEYNELHAFMANRAN 258 >UniRef50_B2HUK5 Pseudouridine synthase n=9 Tax=Gammaproteobacteria RepID=B2HUK5_ACIBC Length = 307 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 76/252 (30%), Positives = 136/252 (53%), Gaps = 17/252 (6%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAE 65 S +L K ++ G+ SRR + I G V +NG+ A +G++++PGD ++++G+ ++ + + Sbjct: 2 SEKLQKVLARIGLGSRRYMEEVIAAGRVSVNGRIAQVGERIEPGDELRIDGRKVQFQIED 61 Query: 66 DL---VLIALNKPVGIVSTTEDGE-RDNIVDFVNH--SKRVFPIGRLDKDSQGLIFLTNH 119 ++ VLI KP G + + D E R + D + + R +GRLD +S GL+ TN Sbjct: 62 EIRRRVLIYY-KPEGEICSRNDPEKRPTVFDHLPQIANDRWVMVGRLDINSTGLLLFTND 120 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTK---KCKVKKEA-PF 175 G+L N+++ N+ E+EY V V +T + + M GV + K ++ E Sbjct: 121 GELANRLMHPSNEIEREYAVRVMGEVTPQLRQNMVNGVELEDGPAKFESFSEIGGEGINR 180 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDELIDLFK 234 +++ + +G NR++RR+ E G +V +L RTR V L + G W +L ++ +L K Sbjct: 181 WYQVVVKEGRNREVRRIFESQGLKVSRLLRTRYGTVILPRELRTGRWMELDKTDIDNLAK 240 Query: 235 LIENSSSEVKPK 246 S E+KP+ Sbjct: 241 -----SVELKPR 247 >UniRef50_C0W3E8 Pseudouridine synthase n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W3E8_9ACTO Length = 325 Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/247 (29%), Positives = 126/247 (51%), Gaps = 26/247 (10%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQ--LIEPRE 63 RL K ++ +G+ SRR + I G V ++G T G +V P ++V+G L +P Sbjct: 77 RLQKVLAHAGVASRRACEEIIAAGRVSVDGVVVTEPGVRVDPSRQEIRVDGSRVLTDP-- 134 Query: 64 AEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH-------------SKRVFPIGRLDKD 109 D++ + L+KP G+V+T ED + R + D S R+ +GRLD + Sbjct: 135 --DVITVLLHKPAGVVTTMEDPQGRPTVADLAEQFISEHRTELEHPESVRLVHVGRLDTE 192 Query: 110 SQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTK--KC 167 ++GL+ L+N GDL ++++ + K Y+ V+ + R + G+ + + + + Sbjct: 193 TEGLLLLSNDGDLAHRLMHPSFEISKTYVAIVEGQVEGWVPRKLRRGIELDDGLAQADRV 252 Query: 168 KVKKEAPF--VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLT 225 VK P + ITL G NR +RRM + G+ V +L RT++ + + G+ G+ R LT Sbjct: 253 VVKDAGPSGSIVEITLHSGKNRIVRRMLDAVGHPVTRLARTKLGPLGIGGLRPGQMRRLT 312 Query: 226 DDELIDL 232 +E+ L Sbjct: 313 GEEITAL 319 >UniRef50_B3DRY9 Pseudouridine synthase n=7 Tax=Bifidobacterium RepID=B3DRY9_BIFLD Length = 256 Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 76/239 (31%), Positives = 132/239 (55%), Gaps = 11/239 (4%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEPR 62 +S+RL K ++++G SRR+ + I +G V ++G+ T +G +V P V+V+G + R Sbjct: 16 NSIRLQKLLAQAGFGSRRKCEDMITEGRVEVDGELVTELGTRVDPHKQQVRVDGSRV--R 73 Query: 63 EAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFV-NHSKRVFPIGRLDKDSQGLIFLTNHG 120 + V +ALNKP ++S +D + R + D V + +R+F +GRLD DS+GLI +TN G Sbjct: 74 VNPNHVTLALNKPRKVLSAMDDPKGRYTLRDIVGDKYERIFHMGRLDYDSEGLILMTNDG 133 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGM-SAGVPILGTVTK--KCKVKKEA--PF 175 +L ++ + EK Y+ T++ I+ R + + GV + K C + + Sbjct: 134 ELSQHVMHPKYEVEKTYVATLEGKISGTVCRRLVTTGVQLDDGWIKLDHCAIIDSSRDHT 193 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFK 234 + ++ L G NR +RR+ G+ VK+L RT+I + L + G +R L+ E+ L K Sbjct: 194 MVKVVLHSGKNRIVRRIFGSIGFPVKRLVRTQIGPIKLGDLKPGSYRVLSQTEVRSLSK 252 >UniRef50_C0FY58 Pseudouridine synthase n=3 Tax=Clostridiales RepID=C0FY58_9FIRM Length = 261 Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 71/235 (30%), Positives = 125/235 (53%), Gaps = 12/235 (5%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGD-QVKP-GDVVKVNGQLIEPREA 64 +RL+K+++E G+ +R E + ++ + +NG+ T + +V P D + G+ + E Sbjct: 25 MRLDKFLTEMGLGTRSEVKKILKTKQITVNGEIVTKPETKVAPENDQISYKGEPVTYCEY 84 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKR--VFPIGRLDKDSQGLIFLTNHGDL 122 E + KP G V+ TED ++D++ + R +FP+GRLD D++GL+ +TN G L Sbjct: 85 EYYLFY---KPAGCVTATEDQLHKTVMDYLTDTVRSDLFPVGRLDIDTEGLLLITNDGAL 141 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI-LGTVTKKCK---VKKEAPFVFR 178 + +L EK Y +D +TE+ + GV I +TK K +K E Sbjct: 142 AHDLLSPAKHVEKTYYAVIDGVVTEKDVNSFENGVDIGEEKLTKPGKLRILKSEPESEIE 201 Query: 179 ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDL 232 +T+ +G Q++RM E G +V L+R + + L+ + GE+R LT++E+ L Sbjct: 202 LTITEGRFHQVKRMFEAVGKKVLYLKRISMGPLQLTDDLKPGEYRPLTEEEITAL 256 >UniRef50_C1A8K5 Pseudouridine synthase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A8K5_GEMAT Length = 237 Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 118/229 (51%), Gaps = 10/229 (4%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPG-DVVKVNGQLIEPREAE 65 +R+ + ++ G SRREAD+ + +G V +NG A +G V P D + ++G + + Sbjct: 1 MRVQRALARVGAVSRREADKAVAEGRVQVNGTTAIVGQLVDPARDRITLDGTPVATQVTA 60 Query: 66 DLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVN 124 I L+KP +++T +D E R + D V+ + + +GRLD ++G++ LT G + Sbjct: 61 HR-WIVLHKPAAVMTTRKDPEGRATVFDLVDDAPGLVYVGRLDFMTEGVLLLTTDGTAAH 119 Query: 125 KILRAGNDHEKEYLVTV---DKPITEEFIRG--MSAGVPILGTVTKKCKVKKEAPFVFRI 179 + ++ E+ Y+ TV E RG + G+ + VT ++ + F + Sbjct: 120 VLTHPSHEVERTYVATVRGDAVTAAREARRGVKLDDGLVVPSEVTAYPLGERR--WAFEL 177 Query: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDE 228 T+ +G ++RR+C+ G EV++L RTR V L +P G R LT E Sbjct: 178 TITEGRTHEVRRICDALGLEVERLVRTRFGPVRLGELPSGAARALTSAE 226 >UniRef50_C9M8T9 RNA pseudouridine synthase n=2 Tax=Synergistaceae RepID=C9M8T9_9BACT Length = 241 Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 76/244 (31%), Positives = 121/244 (49%), Gaps = 23/244 (9%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREA 64 +VRLNKY++ G+ SRR+ ++ I G V +NG + +G QV+ GD V V+ + Sbjct: 2 TVRLNKYLASCGVGSRRKVEQLITAGRVTVNGYLVSDLGHQVEDGDAVAVDDVEVH---V 58 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSK---RVFPIGRLDKDSQGLIFLTNHGD 121 E I + KP G + + + ++D + S R+FP+GRLD S+G++ LTN GD Sbjct: 59 EAKTYIVIRKPRGYICAVTNPDYPVVLDLLPRSYDRLRLFPVGRLDLQSEGILILTNDGD 118 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK---------KE 172 N ++ N K Y V +++ +T + + G G V + Sbjct: 119 FANDLIHPSNGVTKTYEVRMNRVLTAADLENLRGGTVFEGRRLVPLSVDLLPDRRPEGQW 178 Query: 173 APFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDL 232 A FV L +G+ R+IR M E G V+ L R I + L + GE+ ++T L DL Sbjct: 179 ATFV----LGEGVKREIRLMAEGCGMTVEVLFRRAIGRMELRTLKSGEFVEVT---LKDL 231 Query: 233 FKLI 236 +K+I Sbjct: 232 WKMI 235 >UniRef50_Q55578 Uncharacterized RNA pseudouridine synthase slr0361 n=21 Tax=Cyanobacteria RepID=Y361_SYNY3 Length = 249 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 70/216 (32%), Positives = 112/216 (51%), Gaps = 10/216 (4%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKP-GDVVKVNGQLIEPREAED 66 R+ K +S+ GI SRR A+ I G V +NGK A +GD+ P D + V+G+ I+ Sbjct: 4 RIQKLLSQWGIASRRHAEEMILAGRVSVNGKVANLGDKADPQQDFLSVDGKQIKADNRPR 63 Query: 67 LVLIALNKPVGIVSTTEDGE-RDNIVDF----VNHSKRVFPIGRLDKDSQGLIFLTNHGD 121 + + +NKP ++ST +D R ++D + K + P+GRLD++S G + LTN G+ Sbjct: 64 DIYLLVNKPRDVLSTCDDPRGRKTVLDLLPQDLQRGKGLHPVGRLDRNSTGALLLTNDGE 123 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILG--TVTKKCKVKKEA--PFVF 177 L ++ K Y V ++ ++E + +G+ + G T+ +V E Sbjct: 124 LTLRLTHPRYHLPKTYDVWLEGNPSDEDLEKWRSGMMLDGKKTLPATLEVISENKDQIHL 183 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL 213 +TL +G NRQIRR+ E G V KL R I + L Sbjct: 184 LVTLTEGRNRQIRRLAEELGLTVLKLHRRTIGPLQL 219 >UniRef50_B9HLH3 Predicted protein n=5 Tax=Magnoliophyta RepID=B9HLH3_POPTR Length = 397 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 74/251 (29%), Positives = 127/251 (50%), Gaps = 23/251 (9%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPG-DVVKVNGQLIEP 61 D + RL+K ++ +G+ SRR ++ I +G V +NG T +V PG D + VNG + P Sbjct: 144 DQAQRLSKVLAAAGVASRRSSEALIFEGKVTVNGSVCNTPQTRVDPGRDSIYVNGNRL-P 202 Query: 62 REAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNH-------------SKRVFPIGRLDK 108 ++ + IALNKP G + + + E +++ ++ R+F +GRLD Sbjct: 203 KKLPPKIYIALNKPKGYICSLGEKESKSVMCLLDDYFQSWDKRNPGLPKPRLFTVGRLDV 262 Query: 109 DSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILG--TVTKK 166 + GLI +TN GD +I ++ KEY+ TVD +++ + +S G I G V Sbjct: 263 ATTGLIIVTNDGDFAQQIAHPSSNLSKEYIATVDGVVSKRHLFAVSEGTVIEGVRCVPDS 322 Query: 167 CKVKKEAP----FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEW 221 ++ + P RI + +G N ++R + ++ G E+ L+R RI L S + LG+ Sbjct: 323 VELLPQQPDRPRPRLRIVVHEGRNHEVRELVKNAGLEIHSLKRVRIGGFRLPSDLGLGKH 382 Query: 222 RDLTDDELIDL 232 +L +L L Sbjct: 383 AELKQTDLKTL 393 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q83IR6 Ribosomal large subunit pseudouridine synthase F... 403 e-111 UniRef50_Q8Z1V3 Ribosomal large subunit pseudouridine synthase F... 353 3e-96 UniRef50_Q7MMX9 Pseudouridine synthase n=43 Tax=Vibrionaceae Rep... 298 1e-79 UniRef50_C7PFL3 Pseudouridine synthase n=3 Tax=Bacteria RepID=C7... 293 5e-78 UniRef50_C9L6I1 Pseudouridine synthase n=1 Tax=Blautia hansenii ... 290 5e-77 UniRef50_A6EPE0 Pseudouridine synthase n=1 Tax=unidentified euba... 282 1e-74 UniRef50_Q21MN5 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q2... 281 2e-74 UniRef50_C7ICF2 Pseudouridine synthase n=1 Tax=Clostridium papyr... 280 4e-74 UniRef50_C6J9Y4 Pseudouridine synthase n=2 Tax=Clostridiales Rep... 280 5e-74 UniRef50_A9KPL1 Pseudouridine synthase n=63 Tax=Bacteria RepID=A... 277 3e-73 UniRef50_Q3IC94 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q3... 276 7e-73 UniRef50_B3E7C4 Pseudouridine synthase n=6 Tax=Desulfuromonadale... 269 7e-71 UniRef50_C5EVC9 Pseudouridine synthase n=6 Tax=Clostridiales Rep... 268 2e-70 UniRef50_B2A4P2 Pseudouridine synthase n=2 Tax=Clostridia RepID=... 267 3e-70 UniRef50_C8P160 Pseudouridine synthase n=1 Tax=Erysipelothrix rh... 266 7e-70 UniRef50_A5IKF7 Pseudouridine synthase n=5 Tax=Thermotogaceae Re... 265 1e-69 UniRef50_A8SLU4 Pseudouridine synthase n=1 Tax=Parvimonas micra ... 264 2e-69 UniRef50_A8ZRV1 Pseudouridine synthase n=3 Tax=Desulfobacteracea... 263 4e-69 UniRef50_UPI000196BAD7 hypothetical protein CATMIT_00510 n=1 Tax... 263 6e-69 UniRef50_B0TFD8 Pseudouridine synthase n=18 Tax=Bacteria RepID=B... 263 7e-69 UniRef50_D1CFA0 Pseudouridine synthase n=1 Tax=Thermobaculum ter... 261 2e-68 UniRef50_A5ZYR1 Pseudouridine synthase n=2 Tax=Clostridiales Rep... 261 2e-68 UniRef50_C6JI84 Pseudouridine synthase n=2 Tax=Fusobacterium Rep... 261 2e-68 UniRef50_A0PYR9 Pseudouridine synthase n=9 Tax=Clostridium RepID... 260 3e-68 UniRef50_Q24V73 Pseudouridine synthase n=3 Tax=Bacteria RepID=Q2... 260 3e-68 UniRef50_D1Y0J0 Pseudouridine synthase n=1 Tax=Prevotella bivia ... 260 4e-68 UniRef50_C7MNA2 Pseudouridine synthase n=1 Tax=Cryptobacterium c... 260 4e-68 UniRef50_A5TWE7 Pseudouridine synthase n=10 Tax=Fusobacterium Re... 260 4e-68 UniRef50_B8G2X0 Pseudouridine synthase n=3 Tax=Bacteria RepID=B8... 259 7e-68 UniRef50_UPI0001693918 pseudouridylate synthase n=1 Tax=Paenibac... 259 8e-68 UniRef50_B2RK43 Pseudouridine synthase n=1 Tax=Porphyromonas gin... 259 9e-68 UniRef50_B3U4L2 Pseudouridine synthase n=3 Tax=Bacteria RepID=B3... 259 9e-68 UniRef50_C8WXC0 Pseudouridine synthase n=3 Tax=Firmicutes RepID=... 259 1e-67 UniRef50_A4J3M3 Pseudouridine synthase n=167 Tax=Bacteria RepID=... 258 1e-67 UniRef50_B5YJH7 Pseudouridine synthase n=1 Tax=Thermodesulfovibr... 258 2e-67 UniRef50_Q31H34 Pseudouridine synthase n=1 Tax=Thiomicrospira cr... 258 2e-67 UniRef50_B0N6F1 Pseudouridine synthase n=3 Tax=Bacteria RepID=B0... 258 2e-67 UniRef50_A6LIA0 Pseudouridine synthase n=23 Tax=Bacteroidales Re... 257 2e-67 UniRef50_B9KC52 Pseudouridine synthase n=1 Tax=Thermotoga neapol... 257 3e-67 UniRef50_C7M7R0 Pseudouridine synthase n=4 Tax=Bacteroidetes Rep... 257 3e-67 UniRef50_C3JBA6 Pseudouridine synthase n=2 Tax=Bacteria RepID=C3... 257 4e-67 UniRef50_Q0AX41 Pseudouridine synthase n=1 Tax=Syntrophomonas wo... 256 5e-67 UniRef50_C0FY58 Pseudouridine synthase n=3 Tax=Clostridiales Rep... 256 8e-67 UniRef50_D1C7P2 Pseudouridine synthase n=1 Tax=Sphaerobacter the... 255 9e-67 UniRef50_Q65HX7 Pseudouridine synthase n=5 Tax=Firmicutes RepID=... 255 1e-66 UniRef50_C9KIR7 Pseudouridine synthase n=1 Tax=Mitsuokella multa... 255 2e-66 UniRef50_A8SYF2 Pseudouridine synthase n=1 Tax=Coprococcus eutac... 254 2e-66 UniRef50_C1XV14 Pseudouridine synthase n=2 Tax=Meiothermus RepID... 254 3e-66 UniRef50_D0MIA1 Pseudouridine synthase n=1 Tax=Rhodothermus mari... 253 5e-66 UniRef50_P0AA45 Ribosomal small subunit pseudouridine synthase A... 253 5e-66 UniRef50_D0U645 Pseudouridine synthase n=1 Tax=uncultured actino... 253 6e-66 UniRef50_C7H5G4 Pseudouridine synthase n=8 Tax=Clostridiales Rep... 253 7e-66 UniRef50_P35159 Ribosomal large subunit pseudouridine synthase B... 253 7e-66 UniRef50_C8NZC3 Pseudouridine synthase n=1 Tax=Erysipelothrix rh... 253 7e-66 UniRef50_A2RP35 Pseudouridine synthase n=172 Tax=Firmicutes RepI... 252 8e-66 UniRef50_C6VXU0 Pseudouridine synthase n=1 Tax=Dyadobacter ferme... 252 1e-65 UniRef50_A3CPQ5 Pseudouridine synthase n=3 Tax=Firmicutes RepID=... 252 1e-65 UniRef50_A9NFY3 Pseudouridine synthase n=1 Tax=Acholeplasma laid... 252 1e-65 UniRef50_C6Y027 Pseudouridine synthase n=1 Tax=Pedobacter hepari... 252 1e-65 UniRef50_C7GZ55 Pseudouridine synthase n=1 Tax=Eubacterium saphe... 252 1e-65 UniRef50_D2QMI8 RNA-binding S4 domain protein n=16 Tax=Bacteroid... 252 1e-65 UniRef50_C2D7I2 Pseudouridine synthase n=1 Tax=Atopobium vaginae... 252 1e-65 UniRef50_UPI0001BCEF2E pseudouridine synthase n=1 Tax=Selenomona... 252 1e-65 UniRef50_Q12AB3 Pseudouridine synthase n=8 Tax=Proteobacteria Re... 252 2e-65 UniRef50_B4U4Q4 Pseudouridine synthase n=15 Tax=Lactobacillales ... 252 2e-65 UniRef50_O67444 Uncharacterized RNA pseudouridine synthase aq_14... 251 2e-65 UniRef50_B4D966 Pseudouridine synthase n=1 Tax=Chthoniobacter fl... 251 2e-65 UniRef50_C7NDY8 Pseudouridine synthase n=5 Tax=Fusobacteriaceae ... 250 3e-65 UniRef50_Q7UUP0 Pseudouridine synthase n=1 Tax=Rhodopirellula ba... 250 3e-65 UniRef50_UPI00016C3D27 ribosomal large subunit pseudouridine syn... 250 4e-65 UniRef50_B1XJP9 Pseudouridine synthase n=3 Tax=Chroococcales Rep... 250 5e-65 UniRef50_C0QWY7 Pseudouridine synthase n=2 Tax=Brachyspira RepID... 249 6e-65 UniRef50_A3ESK0 Pseudouridine synthase n=4 Tax=Bacteria RepID=A3... 249 6e-65 UniRef50_Q1J0B9 Pseudouridine synthase n=5 Tax=Deinococci RepID=... 249 7e-65 UniRef50_B9KY92 Pseudouridine synthase n=1 Tax=Thermomicrobium r... 249 7e-65 UniRef50_C4XEA6 Pseudouridine synthase n=1 Tax=Mycoplasma fermen... 249 8e-65 UniRef50_C2MA52 Pseudouridine synthase n=1 Tax=Porphyromonas uen... 249 1e-64 UniRef50_Q8ZGM2 Ribosomal small subunit pseudouridine synthase A... 249 1e-64 UniRef50_B2V6W2 Pseudouridine synthase n=5 Tax=Bacteria RepID=B2... 248 1e-64 UniRef50_A4SY81 Pseudouridine synthase n=5 Tax=Proteobacteria Re... 248 1e-64 UniRef50_A3HY40 Pseudouridine synthase n=1 Tax=Algoriphagus sp. ... 248 1e-64 UniRef50_C4XSY8 Pseudouridine synthase n=11 Tax=Desulfovibrional... 248 2e-64 UniRef50_Q01SF5 Pseudouridine synthase n=3 Tax=Bacteria RepID=Q0... 248 2e-64 UniRef50_A4BW35 Pseudouridine synthase n=3 Tax=Flavobacteriaceae... 248 2e-64 UniRef50_A4J9G8 Pseudouridine synthase n=47 Tax=Bacteria RepID=A... 248 2e-64 UniRef50_Q3MC44 Pseudouridine synthase n=21 Tax=Cyanobacteria Re... 247 2e-64 UniRef50_Q6G8H4 Pseudouridine synthase n=61 Tax=Firmicutes RepID... 247 3e-64 UniRef50_C4V2S0 Pseudouridine synthase n=1 Tax=Selenomonas flueg... 247 3e-64 UniRef50_C8PSZ6 Ribosomal large subunit pseudouridine synthase B... 247 3e-64 UniRef50_Q9HZ55 Ribosomal large subunit pseudouridine synthase B... 247 3e-64 UniRef50_C4FUC8 Pseudouridine synthase n=1 Tax=Catonella morbi A... 247 3e-64 UniRef50_B3QY10 Pseudouridine synthase n=10 Tax=Chlorobiaceae Re... 247 4e-64 UniRef50_C4Z9Y4 Pseudouridine synthase n=16 Tax=Bacteria RepID=C... 247 4e-64 UniRef50_C8WAL4 Pseudouridine synthase n=7 Tax=Coriobacteriaceae... 247 5e-64 UniRef50_A5IXL5 Pseudouridine synthase n=3 Tax=Mycoplasma RepID=... 247 5e-64 UniRef50_A5V220 Pseudouridine synthase n=5 Tax=Bacteria RepID=A5... 247 5e-64 UniRef50_Q2S2G3 Pseudouridine synthase n=1 Tax=Salinibacter rube... 246 5e-64 UniRef50_A5WGV6 Pseudouridine synthase n=7 Tax=Moraxellaceae Rep... 246 7e-64 UniRef50_C9RK28 Pseudouridine synthase n=1 Tax=Fibrobacter succi... 245 1e-63 UniRef50_C4ZJR2 Pseudouridine synthase n=2 Tax=Betaproteobacteri... 245 1e-63 UniRef50_A1ZI67 Pseudouridine synthase n=1 Tax=Microscilla marin... 245 1e-63 UniRef50_C3BQR1 Pseudouridine synthase n=3 Tax=Bacillus RepID=C3... 245 1e-63 UniRef50_Q55578 Uncharacterized RNA pseudouridine synthase slr03... 245 1e-63 UniRef50_Q3B289 Pseudouridine synthase n=2 Tax=Chlorobium/Pelodi... 245 2e-63 UniRef50_Q3IDR5 Pseudouridine synthase n=3 Tax=Alteromonadales R... 244 2e-63 UniRef50_Q11YT0 Pseudouridine synthase n=9 Tax=Bacteroidetes Rep... 244 2e-63 UniRef50_Q31GA0 Pseudouridine synthase n=2 Tax=Gammaproteobacter... 244 2e-63 UniRef50_A5EVQ2 Pseudouridine synthase n=1 Tax=Dichelobacter nod... 244 3e-63 UniRef50_Q8X4Q8 Ribosomal large subunit pseudouridine synthase B... 244 3e-63 UniRef50_Q4AAG8 Pseudouridine synthase n=6 Tax=Mycoplasma RepID=... 244 3e-63 UniRef50_C8QZD4 Pseudouridine synthase n=1 Tax=Desulfurivibrio a... 243 4e-63 UniRef50_C6X4T2 Pseudouridine synthase n=2 Tax=Flavobacteriaceae... 243 4e-63 UniRef50_A8S8D3 Pseudouridine synthase n=1 Tax=Faecalibacterium ... 243 4e-63 UniRef50_A9KNY1 Pseudouridine synthase n=3 Tax=Firmicutes RepID=... 243 5e-63 UniRef50_A3ZQL4 Pseudouridine synthase n=1 Tax=Blastopirellula m... 243 6e-63 UniRef50_A6C4P7 Pseudouridine synthase n=1 Tax=Planctomyces mari... 243 6e-63 UniRef50_Q2NIZ3 Pseudouridine synthase n=5 Tax=Candidatus Phytop... 243 7e-63 UniRef50_C1F236 Pseudouridine synthase n=8 Tax=Bacteria RepID=C1... 243 7e-63 UniRef50_D2R7V9 Pseudouridine synthase n=1 Tax=Pirellula staleyi... 243 7e-63 UniRef50_A4CJ52 Pseudouridine synthase n=5 Tax=cellular organism... 242 9e-63 UniRef50_Q87NB7 Ribosomal large subunit pseudouridine synthase B... 242 1e-62 UniRef50_B9MRL6 Pseudouridine synthase n=2 Tax=Clostridia RepID=... 242 1e-62 UniRef50_Q1D5Q2 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q1... 242 1e-62 UniRef50_P45104 Ribosomal large subunit pseudouridine synthase B... 241 2e-62 UniRef50_Q1LLR3 Pseudouridine synthase n=15 Tax=Proteobacteria R... 241 2e-62 UniRef50_A0L6G3 Pseudouridine synthase n=1 Tax=Magnetococcus sp.... 241 2e-62 UniRef50_UPI0001BC345F ribosomal large subunit pseudouridine syn... 241 2e-62 UniRef50_C3X1E1 Pseudouridine synthase n=2 Tax=Oxalobacter formi... 241 2e-62 UniRef50_C6BUF1 RNA-binding S4 domain protein n=1 Tax=Desulfovib... 241 3e-62 UniRef50_C8WGQ8 Pseudouridine synthase n=1 Tax=Eggerthella lenta... 240 4e-62 UniRef50_A5TW76 Pseudouridine synthase n=11 Tax=Fusobacterium Re... 240 5e-62 UniRef50_A1WE21 Pseudouridine synthase n=1 Tax=Verminephrobacter... 240 5e-62 UniRef50_D2MQD6 Pseudouridylate synthase n=1 Tax=Bulleidia extru... 240 6e-62 UniRef50_C1ZE67 Pseudouridine synthase n=1 Tax=Planctomyces limn... 239 7e-62 UniRef50_Q1MQ05 Pseudouridine synthase n=1 Tax=Lawsonia intracel... 239 7e-62 UniRef50_C7I043 Pseudouridine synthase n=4 Tax=Proteobacteria Re... 239 1e-61 UniRef50_B1C6T1 Pseudouridine synthase n=2 Tax=Clostridiales Rep... 239 1e-61 UniRef50_C7LZX4 Pseudouridine synthase n=1 Tax=Acidimicrobium fe... 238 1e-61 UniRef50_B0S1L0 Pseudouridine synthase n=2 Tax=Finegoldia magna ... 238 1e-61 UniRef50_D0LG91 Pseudouridine synthase n=3 Tax=Bacteria RepID=D0... 238 1e-61 UniRef50_D1PIW4 Pseudouridine synthase n=1 Tax=Subdoligranulum v... 238 1e-61 UniRef50_B0B8U9 Pseudouridine synthase n=10 Tax=Chlamydiales Rep... 238 1e-61 UniRef50_A0JV58 Pseudouridine synthase n=37 Tax=Actinobacteridae... 238 1e-61 UniRef50_C8NNL7 Pseudouridine synthase n=8 Tax=Corynebacterium R... 238 2e-61 UniRef50_C1DTU8 Pseudouridine synthase n=5 Tax=Bacteria RepID=C1... 238 2e-61 UniRef50_D0SB72 Pseudouridine synthase n=5 Tax=Acinetobacter Rep... 238 2e-61 UniRef50_Q2NSN0 Pseudouridine synthase n=7 Tax=Gammaproteobacter... 237 2e-61 UniRef50_D1AL84 Pseudouridine synthase n=1 Tax=Sebaldella termit... 237 3e-61 UniRef50_A4QE19 Pseudouridine synthase n=13 Tax=Corynebacterinea... 237 3e-61 UniRef50_D2RB61 Pseudouridylate synthase n=2 Tax=Gardnerella vag... 237 4e-61 UniRef50_C0D9T3 Pseudouridine synthase n=1 Tax=Clostridium aspar... 237 4e-61 UniRef50_Q6SI36 Pseudouridine synthase n=1 Tax=uncultured marine... 237 4e-61 UniRef50_C5CXG1 Pseudouridine synthase n=4 Tax=Comamonadaceae Re... 237 4e-61 UniRef50_Q042N1 Pseudouridine synthase n=3 Tax=Lactobacillus gas... 237 5e-61 UniRef50_C0W3E8 Pseudouridine synthase n=1 Tax=Actinomyces uroge... 237 5e-61 UniRef50_A7HJ83 RNA-binding S4 domain protein n=3 Tax=Thermotoga... 236 6e-61 UniRef50_A1K7C2 Pseudouridine synthase n=1 Tax=Azoarcus sp. BH72... 236 6e-61 UniRef50_C8P302 Pseudouridine synthase n=1 Tax=Erysipelothrix rh... 236 6e-61 UniRef50_UPI0001C337CA ribosomal large subunit pseudouridine syn... 236 7e-61 UniRef50_C7H4Z6 Pseudouridine synthase n=1 Tax=Faecalibacterium ... 236 7e-61 UniRef50_Q2LSY4 Pseudouridine synthase n=1 Tax=Syntrophus acidit... 236 8e-61 UniRef50_A6G735 Pseudouridine synthase n=2 Tax=Bacteria RepID=A6... 236 8e-61 UniRef50_D1N1S2 Pseudouridine synthase n=1 Tax=Victivallis vaden... 236 9e-61 UniRef50_B3DRY9 Pseudouridine synthase n=7 Tax=Bifidobacterium R... 236 9e-61 UniRef50_B6EJI1 Pseudouridine synthase n=8 Tax=Gammaproteobacter... 235 1e-60 UniRef50_Q2W4E4 Pseudouridine synthase n=20 Tax=cellular organis... 235 1e-60 UniRef50_Q140U9 Pseudouridine synthase n=80 Tax=Proteobacteria R... 235 1e-60 UniRef50_A3JIZ1 Pseudouridine synthase n=1 Tax=Marinobacter sp. ... 235 1e-60 UniRef50_Q1GFA6 Pseudouridine synthase n=3 Tax=Rhodobacteraceae ... 235 2e-60 UniRef50_D1R854 Pseudouridine synthase n=4 Tax=Chlamydiales RepI... 234 2e-60 UniRef50_Q49YI4 Pseudouridine synthase n=2 Tax=Staphylococcus Re... 234 2e-60 UniRef50_Q3J464 Pseudouridine synthase n=15 Tax=Bacteria RepID=Q... 234 2e-60 UniRef50_B2HUK5 Pseudouridine synthase n=9 Tax=Gammaproteobacter... 234 3e-60 UniRef50_C5WHE9 Pseudouridine synthase n=3 Tax=Lactobacillales R... 233 4e-60 UniRef50_A6LUE3 Pseudouridine synthase n=3 Tax=Clostridium RepID... 233 4e-60 UniRef50_UPI0001BC54DC ribosomal large subunit pseudouridine syn... 233 4e-60 UniRef50_A6DMJ6 Pseudouridine synthase n=1 Tax=Lentisphaera aran... 233 5e-60 UniRef50_A9GX03 Pseudouridine synthase n=2 Tax=Bacteria RepID=A9... 233 5e-60 UniRef50_Q688C2 Pseudouridine synthase n=1 Tax=Mycoplasma mobile... 233 6e-60 UniRef50_Q3AVD5 Pseudouridine synthase n=3 Tax=Cyanobacteria Rep... 233 6e-60 UniRef50_C2KPR0 Pseudouridine synthase n=3 Tax=Mobiluncus RepID=... 233 6e-60 UniRef50_Q1Q1Q0 Pseudouridine synthase n=1 Tax=Candidatus Kuenen... 233 7e-60 UniRef50_B0VG32 Pseudouridine synthase n=1 Tax=Candidatus Cloaca... 233 7e-60 UniRef50_B3PMD0 Pseudouridine synthase n=2 Tax=Mycoplasma RepID=... 232 8e-60 UniRef50_Q04F57 Pseudouridine synthase n=2 Tax=Oenococcus oeni R... 232 1e-59 UniRef50_Q38VQ0 Pseudouridine synthase n=6 Tax=Lactobacillus Rep... 232 1e-59 UniRef50_B6W7S5 Pseudouridine synthase n=2 Tax=Anaerococcus RepI... 232 1e-59 UniRef50_A1U6Q2 Pseudouridine synthase n=4 Tax=Gammaproteobacter... 232 1e-59 UniRef50_C2KV26 Pseudouridylate synthase n=1 Tax=Oribacterium si... 232 1e-59 UniRef50_Q1J642 Pseudouridine synthase n=51 Tax=Streptococcus Re... 232 1e-59 UniRef50_Q47QM5 Pseudouridine synthase n=3 Tax=Actinomycetales R... 232 1e-59 UniRef50_A7HC79 Pseudouridine synthase n=1 Tax=Anaeromyxobacter ... 232 2e-59 UniRef50_B9XS61 Pseudouridine synthase n=1 Tax=bacterium Ellin51... 232 2e-59 UniRef50_B8DUD9 Pseudouridine synthase n=8 Tax=Bifidobacterium R... 231 2e-59 UniRef50_Q5F8V3 Pseudouridine synthase n=21 Tax=Proteobacteria R... 231 2e-59 UniRef50_Q1YVK2 Pseudouridine synthase n=3 Tax=Gammaproteobacter... 231 2e-59 UniRef50_C7PP04 Pseudouridine synthase n=1 Tax=Chitinophaga pine... 231 3e-59 UniRef50_A3UFV9 Pseudouridine synthase n=1 Tax=Oceanicaulis alex... 231 3e-59 UniRef50_A5CX60 Pseudouridine synthase n=1 Tax=Candidatus Vesico... 230 3e-59 UniRef50_C9LMF3 Ribosomal small subunit pseudouridine synthase A... 230 3e-59 UniRef50_A6GNL7 Pseudouridine synthase n=2 Tax=Betaproteobacteri... 230 3e-59 UniRef50_A9ITY6 Pseudouridine synthase n=6 Tax=Betaproteobacteri... 230 4e-59 UniRef50_Q1H048 Pseudouridine synthase n=4 Tax=Betaproteobacteri... 230 4e-59 UniRef50_O32068 Uncharacterized RNA pseudouridine synthase ytzG ... 230 5e-59 UniRef50_Q0AS26 Pseudouridine synthase n=1 Tax=Maricaulis maris ... 230 5e-59 UniRef50_UPI0001C37AA4 16s pseudouridylate synthase n=2 Tax=Rumi... 230 6e-59 UniRef50_Q2SRP5 Ribosomal large subunit pseudouridine synthase B... 230 6e-59 UniRef50_C6VP86 Pseudouridine synthase n=4 Tax=Lactobacillaceae ... 229 7e-59 UniRef50_C6XB83 RNA-binding S4 domain protein n=2 Tax=Methylophi... 229 7e-59 UniRef50_D0J9Y2 Pseudouridine synthase n=1 Tax=Blattabacterium s... 229 8e-59 UniRef50_D1B9Q8 Pseudouridine synthase n=1 Tax=Thermanaerovibrio... 229 9e-59 UniRef50_B9ZS86 Pseudouridine synthase n=2 Tax=Chromatiales RepI... 229 9e-59 UniRef50_A8G0B7 Pseudouridine synthase n=19 Tax=Shewanella RepID... 229 1e-58 UniRef50_A0LG30 Pseudouridine synthase n=1 Tax=Syntrophobacter f... 229 1e-58 UniRef50_D2B9T7 Pseudouridine synthase n=18 Tax=Actinobacteria (... 229 1e-58 UniRef50_Q0F269 Pseudouridine synthase n=1 Tax=Mariprofundus fer... 229 1e-58 UniRef50_B4RM91 Pseudouridine synthase n=8 Tax=Betaproteobacteri... 228 1e-58 UniRef50_C7NBL1 Pseudouridine synthase n=3 Tax=Leptotrichia RepI... 228 1e-58 UniRef50_B0RHF4 Pseudouridine synthase n=3 Tax=Actinobacteria (c... 228 1e-58 UniRef50_A6DF49 Pseudouridine synthase n=1 Tax=Lentisphaera aran... 228 2e-58 UniRef50_A8U325 Pseudouridine synthase n=1 Tax=alpha proteobacte... 228 2e-58 UniRef50_A8SIK9 Pseudouridine synthase n=1 Tax=Parvimonas micra ... 228 2e-58 UniRef50_UPI0001BC42E2 ribosomal small subunit pseudouridine syn... 228 2e-58 UniRef50_Q15Q67 Pseudouridine synthase n=2 Tax=Bacteria RepID=Q1... 227 3e-58 UniRef50_B0SBU8 Pseudouridine synthase n=2 Tax=Leptospira biflex... 227 4e-58 UniRef50_Q9I5J6 Ribosomal small subunit pseudouridine synthase A... 227 5e-58 UniRef50_A1S9T3 Pseudouridine synthase n=1 Tax=Shewanella amazon... 227 5e-58 UniRef50_Q11U12 Pseudouridine synthase n=1 Tax=Cytophaga hutchin... 227 5e-58 UniRef50_Q21JF0 Pseudouridine synthase n=2 Tax=Gammaproteobacter... 227 5e-58 UniRef50_D0J8G4 Pseudouridine synthase, Rsu n=96 Tax=Bacteria Re... 226 6e-58 UniRef50_A6LLC7 RNA-binding S4 domain protein n=1 Tax=Thermosiph... 226 8e-58 UniRef50_B1ZYG8 Pseudouridine synthase n=3 Tax=Verrucomicrobia R... 226 9e-58 UniRef50_C9YDN9 Putative uncharacterized protein n=1 Tax=Curviba... 226 9e-58 UniRef50_Q73PC4 Pseudouridine synthase n=1 Tax=Treponema dentico... 225 1e-57 UniRef50_B1X5I1 Pseudouridine synthase, Rsu n=1 Tax=Paulinella c... 225 1e-57 UniRef50_C0BLA3 Pseudouridine synthase n=1 Tax=Flavobacteria bac... 225 1e-57 UniRef50_B0MSS4 Pseudouridine synthase n=1 Tax=Alistipes putredi... 225 1e-57 UniRef50_Q4A5Z2 Pseudouridine synthase n=2 Tax=Mycoplasma synovi... 225 1e-57 UniRef50_C1DA59 Pseudouridine synthase n=6 Tax=Betaproteobacteri... 225 1e-57 UniRef50_A0M7H0 Ribosomal large subunit pseudouridine synthase F... 225 2e-57 UniRef50_A8U4V7 Pseudouridine synthase n=10 Tax=Lactobacillales ... 224 2e-57 UniRef50_B4RA72 Pseudouridine synthase n=4 Tax=Caulobacteraceae ... 224 3e-57 UniRef50_B6BUN1 Pseudouridine synthase n=1 Tax=beta proteobacter... 224 3e-57 UniRef50_B2TQQ1 Pseudouridine synthase n=8 Tax=Clostridium RepID... 223 4e-57 UniRef50_C6HYA4 Pseudouridine synthase n=1 Tax=Leptospirillum fe... 223 4e-57 UniRef50_Q2K4S3 Pseudouridine synthase n=10 Tax=Rhizobiaceae Rep... 223 4e-57 UniRef50_A1K3P0 Pseudouridylate synthase n=3 Tax=Betaproteobacte... 223 4e-57 UniRef50_A6WK95 Pseudouridine synthase n=12 Tax=Gammaproteobacte... 223 5e-57 UniRef50_B1KQS3 Pseudouridine synthase n=20 Tax=Gammaproteobacte... 223 6e-57 UniRef50_A3JEU2 Pseudouridine synthase n=2 Tax=Marinobacter RepI... 223 6e-57 Sequences not found previously or not previously below threshold: >UniRef50_Q83IR6 Ribosomal large subunit pseudouridine synthase F n=90 Tax=Bacteria RepID=RLUF_SHIFL Length = 290 Score = 403 bits (1035), Expect = e-111, Method: Composition-based stats. Identities = 286/290 (98%), Positives = 288/290 (99%) Query: 1 MLPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIE 60 MLPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGD+VKVNGQLIE Sbjct: 1 MLPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDIVKVNGQLIE 60 Query: 61 PREAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHG 120 PREAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHG Sbjct: 61 PREAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHG 120 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRIT 180 DLVNKILRAGNDHEKEYLVTVDKPIT+EFIRGM AGVPILGTVTKKCKVKKEAPFVFRIT Sbjct: 121 DLVNKILRAGNDHEKEYLVTVDKPITDEFIRGMGAGVPILGTVTKKCKVKKEAPFVFRIT 180 Query: 181 LVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSS 240 LVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSS Sbjct: 181 LVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSS 240 Query: 241 SEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKGR 290 SE KPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKGR Sbjct: 241 SEAKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKGR 290 >UniRef50_Q8Z1V3 Ribosomal large subunit pseudouridine synthase F n=235 Tax=Bacteria RepID=RLUF_SALTI Length = 289 Score = 353 bits (907), Expect = 3e-96, Method: Composition-based stats. Identities = 266/290 (91%), Positives = 277/290 (95%), Gaps = 1/290 (0%) Query: 1 MLPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIE 60 ML D+S RLNKYISESGICSRREADR+IEQGNVF+NGKRA IGDQV GDVVKVNG+LIE Sbjct: 1 MLTDTSTRLNKYISESGICSRREADRFIEQGNVFINGKRAAIGDQVVAGDVVKVNGRLIE 60 Query: 61 PREAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHG 120 PREA+DLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKR+FPIGRLDKDSQGLIFLTNHG Sbjct: 61 PREADDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRIFPIGRLDKDSQGLIFLTNHG 120 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRIT 180 DLVNKILRAGNDHEKEYLVTVDKPIT+EFIRGM AGVPILGTVTKKCKVKKEAPFVFRIT Sbjct: 121 DLVNKILRAGNDHEKEYLVTVDKPITDEFIRGMGAGVPILGTVTKKCKVKKEAPFVFRIT 180 Query: 181 LVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSS 240 LVQGLNRQIRRMCE+FGYEV KLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIE SS Sbjct: 181 LVQGLNRQIRRMCEYFGYEVTKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIEGSS 240 Query: 241 SEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKGR 290 SE KPKAKAKPKTAGIKRPVV +EK+ EK RPAS+GKRFTSPGRKKKGR Sbjct: 241 SEAKPKAKAKPKTAGIKRPVVAIEKSNEK-ARPASSGKRFTSPGRKKKGR 289 >UniRef50_Q7MMX9 Pseudouridine synthase n=43 Tax=Vibrionaceae RepID=Q7MMX9_VIBVY Length = 347 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 157/296 (53%), Positives = 191/296 (64%), Gaps = 9/296 (3%) Query: 1 MLPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIE 60 M D++ RLNKYISE+G CSRREAD+ IEQG V +NGK+ +G +V PGD V V+G+ + Sbjct: 1 MSQDNAKRLNKYISETGFCSRREADKLIEQGRVTINGKQPEMGTKVLPGDDVCVDGKPVA 60 Query: 61 PREAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHG 120 E V IALNKP GI TTE NIVDF+ H KR+FPIGRLDK S GLIFLTN G Sbjct: 61 --AKEKPVYIALNKPTGITCTTERNIPGNIVDFIGHKKRIFPIGRLDKPSDGLIFLTNDG 118 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRIT 180 D+VNKILRAGN HEKEY+V VDKPIT EFI+ MS+GV IL TVT CKV +E F FRI Sbjct: 119 DIVNKILRAGNHHEKEYVVRVDKPITPEFIKAMSSGVNILDTVTLPCKVTQETKFSFRIV 178 Query: 181 LVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIEN-- 238 L QGLNRQIRRMCE GYEV KL R RIMN+SL GIP G+WR LTDDE+ ++ + E Sbjct: 179 LTQGLNRQIRRMCEALGYEVFKLRRVRIMNISLDGIPNGKWRYLTDDEVTEILAMCEGSV 238 Query: 239 -----SSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKG 289 S + K + K A + + + + + + K + + Sbjct: 239 GTEEASRVDAKGRRIRKATDAKLFDSREENQTSTARRNQKQRTFKGNNADEFRHAP 294 >UniRef50_C7PFL3 Pseudouridine synthase n=3 Tax=Bacteria RepID=C7PFL3_CHIPD Length = 389 Score = 293 bits (750), Expect = 5e-78, Method: Composition-based stats. Identities = 147/288 (51%), Positives = 194/288 (67%), Gaps = 4/288 (1%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPRE 63 D S+ LNK+IS++G CSRREAD I G V LN + A +G++ KPGD V+V+G LI + Sbjct: 2 DQSISLNKFISDTGYCSRREADNLITSGRVLLNDRPAALGNRYKPGDTVEVDGSLITAAK 61 Query: 64 AEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLV 123 E V +ALNKP GI +TTE +DNI+ FVN+ +R+FPIGRLDKDS+GLIFLTN GD++ Sbjct: 62 KEKRVYLALNKPPGITTTTELHIKDNIISFVNYPQRIFPIGRLDKDSEGLIFLTNDGDII 121 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQ 183 NKILRA N+HEKEY+V V+KPI F+ MS GVPIL T T CKV+ FRITL Q Sbjct: 122 NKILRAANNHEKEYVVRVNKPIDTNFLHQMSQGVPILDTRTLPCKVQMTGRQTFRITLTQ 181 Query: 184 GLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSSS-- 241 GLNRQIRRMCE+ GY V L+R RIMNV L +PLG+WR L++ E+ + + + +S+ Sbjct: 182 GLNRQIRRMCEYLGYTVVGLQRVRIMNVRLDKLPLGKWRYLSEAEIAFIKESVADSTKVS 241 Query: 242 -EVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKK 288 E KP A+ KTA + + +PA+ KR +P + ++ Sbjct: 242 GESKPSG-ARRKTAKPVEEKEHLRTGSTPKNKPATGHKRVAAPAKHRE 288 >UniRef50_C9L6I1 Pseudouridine synthase n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L6I1_RUMHA Length = 271 Score = 290 bits (742), Expect = 5e-77, Method: Composition-based stats. Identities = 133/284 (46%), Positives = 189/284 (66%), Gaps = 21/284 (7%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAED 66 +RLNKY+S++G+CSRREADR IE+ V ++GK A G QV+ +KV+G+ I+ E Sbjct: 1 MRLNKYLSDAGVCSRREADRLIEEKRVLVDGKPAVQGMQVEDFQEIKVDGKAIK--REEK 58 Query: 67 LVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNKI 126 VL+ +KP GI T + N++ ++N+ RV+ GRLDKDS+GL+ LTN G+LVN+I Sbjct: 59 KVLLVFHKPKGIECTANPNVKKNVISYINYPIRVYYAGRLDKDSEGLLLLTNQGELVNQI 118 Query: 127 LRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQGLN 186 ++AG+ HEKEYLVTVDKP+TEEF++ M GVP+LGT+T+KCKV+KE+ VFRITL QGLN Sbjct: 119 MKAGSYHEKEYLVTVDKPVTEEFLQSMREGVPVLGTITRKCKVEKESEKVFRITLTQGLN 178 Query: 187 RQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSSSEVKPK 246 RQIRRMC + GYEV KL+R RIMN+ L +P+G +R+ T +EL +L + I Sbjct: 179 RQIRRMCNYLGYEVVKLKRIRIMNIELGNLPIGSYREATKEELDELKRQISE-------- 230 Query: 247 AKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKGR 290 + + E KG +P N ++ +P + +K + Sbjct: 231 -----------KAEKRQETDFHKGKKPVKNAGKYRNPSKVRKQK 263 >UniRef50_A6EPE0 Pseudouridine synthase n=1 Tax=unidentified eubacterium SCB49 RepID=A6EPE0_9BACT Length = 291 Score = 282 bits (721), Expect = 1e-74, Method: Composition-based stats. Identities = 144/268 (53%), Positives = 183/268 (68%), Gaps = 8/268 (2%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREA 64 +S RLNK IS+SG CSRR+AD+ IE+G V LNG ++GD+ P DV+ V G LI E Sbjct: 6 NSTRLNKAISDSGYCSRRQADKLIEEGKVTLNGNPVSLGDRAMPDDVIHVEGNLIT--EN 63 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVN 124 +LV I LNKPVGI TT+ N+VD+++H +R+F +GRLDK S+GL+ +TN GD+VN Sbjct: 64 NNLVYIILNKPVGITCTTDLRVEGNVVDYIDHKERIFHVGRLDKPSEGLLLMTNDGDIVN 123 Query: 125 KILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPIL--GTVTKKCKVKKEAPFVFRITLV 182 KILRAGN HEKEY V VD+PIT EFIR M G+P+ T TKKC V++ + FVFRI LV Sbjct: 124 KILRAGNSHEKEYFVKVDRPITTEFIRRMGNGIPLEELETTTKKCFVEQVSRFVFRIILV 183 Query: 183 QGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSSSE 242 QGLNRQIRRMCE+ YEV +L+R RIMN+ L +P GEWRDLT +EL L + S ++ Sbjct: 184 QGLNRQIRRMCEYLDYEVMELKRERIMNIELGDLPYGEWRDLTKEELQGLKDAVAKSEND 243 Query: 243 V----KPKAKAKPKTAGIKRPVVKMEKT 266 + K KA PKT R + E Sbjct: 244 SFIDREEKRKAAPKTGDANRNRPRNEAP 271 >UniRef50_Q21MN5 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q21MN5_SACD2 Length = 324 Score = 281 bits (719), Expect = 2e-74, Method: Composition-based stats. Identities = 142/297 (47%), Positives = 183/297 (61%), Gaps = 9/297 (3%) Query: 1 MLPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIE 60 M DS+VRLNK+IS+SG CSRREAD+ I V +NG +G V+ GDVV V+ Q + Sbjct: 1 MTFDSAVRLNKFISDSGHCSRREADKLIASDRVKINGLLPELGAVVESGDVVTVDDQPLR 60 Query: 61 PREAE--DLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTN 118 A+ D + IA NKP GI TT+ + NIVD ++H +R+FPIGRLDK S+GLI LT+ Sbjct: 61 ASAADKTDRIYIAYNKPFGITCTTDQTVKGNIVDAIDHDERIFPIGRLDKPSEGLILLTS 120 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFR 178 GD+VNKILRA N H+KEY+VTV+K + F MS G+PILGT+TK CKV+ F+ Sbjct: 121 DGDIVNKILRAENAHDKEYIVTVNKNLAPNFAEKMSRGLPILGTITKPCKVRVIGKTTFK 180 Query: 179 ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIEN 238 I L QGLNRQIRRMC++ GY+VK+L RTRIMN+ L + G+WR LT EL L K Sbjct: 181 IILTQGLNRQIRRMCDYLGYDVKQLVRTRIMNIELGKLKPGQWRRLTKVELDLLTKATSQ 240 Query: 239 SSSEVKPKAKAK----PKTAGIKRPVVKMEKTAE---KGGRPASNGKRFTSPGRKKK 288 SS A AK P + K++K + K GRP + + K Sbjct: 241 SSKTAIKGANAKSSASPTATKPRVAKPKVKKEPKDLDKHGRPKNKSTGVKRGAKSKN 297 >UniRef50_C7ICF2 Pseudouridine synthase n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7ICF2_9CLOT Length = 235 Score = 280 bits (717), Expect = 4e-74, Method: Composition-based stats. Identities = 87/236 (36%), Positives = 136/236 (57%), Gaps = 9/236 (3%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPRE 63 S +RL KY++ +G+ SRR+A+ I+QG V +N +G V DVV V+G+ + E Sbjct: 2 SEIRLQKYLAHAGVASRRKAEEMIKQGRVAVNNVIIENMGATVTCNDVVTVDGKPVTTEE 61 Query: 64 AEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHS-KRVFPIGRLDKDSQGLIFLTNHGD 121 A+ V I LNKPVG VST++D R ++D V + KR++P+GRLD D+ GLI LTN GD Sbjct: 62 AK--VYIMLNKPVGYVSTSKDQFGRPAVIDLVKDAGKRLYPVGRLDYDTSGLILLTNDGD 119 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK----KEAPFVF 177 ++ ++ K Y + + I G+ I T + + K + Sbjct: 120 FTYRLTHPKHEVNKVYEAVISGFPDKNEITRFETGLKIDDYQTSPAEFEVLNKKGINTLV 179 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF 233 RIT+ +G NRQ+R+MCE G++V L+R +I ++L +P G+WR L+D+E+ L+ Sbjct: 180 RITIHEGKNRQVRKMCEAIGHKVLTLKRIQIGPIALENLPEGKWRHLSDNEVKILY 235 >UniRef50_C6J9Y4 Pseudouridine synthase n=2 Tax=Clostridiales RepID=C6J9Y4_9FIRM Length = 323 Score = 280 bits (716), Expect = 5e-74, Method: Composition-based stats. Identities = 133/285 (46%), Positives = 183/285 (64%), Gaps = 3/285 (1%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPRE 63 D +R+NKY+SE+GICSRREADR IE+G + +NGK+A G +V D + + I + Sbjct: 11 DEKIRINKYLSEAGICSRREADRMIEEGRITVNGKKAESGQKVSLEDEICADN--IPVHK 68 Query: 64 AEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDL 122 E VL+ NKP GIV +T+ + + D++++ RV+P+GRLDK+SQGL+ LTN GDL Sbjct: 69 NEKKVLLLFNKPRGIVCSTKQQFDETTVTDYLDYPLRVYPVGRLDKESQGLLLLTNEGDL 128 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLV 182 VNKI+RAGN HEKEY VTV+KP+ EF+R MS GVP+L TVT+ C+V + FRI L Sbjct: 129 VNKIMRAGNYHEKEYFVTVNKPVDREFVRRMSKGVPVLDTVTRPCRVVQTGECSFRIILT 188 Query: 183 QGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSSSE 242 QGLNRQIRRMC + GYEV+KL+R RIMN++L GI GE+R++T E +L L+E+S+SE Sbjct: 189 QGLNRQIRRMCRYLGYEVQKLKRIRIMNLTLDGIREGEYREITAQEWEELNHLLESSTSE 248 Query: 243 VKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKK 287 + + + K + G R R + Sbjct: 249 TVIRTGEQNGNSSDHANERAGAKAGQGSKGVLPAGYRDHKQQRVR 293 >UniRef50_A9KPL1 Pseudouridine synthase n=63 Tax=Bacteria RepID=A9KPL1_CLOPH Length = 477 Score = 277 bits (710), Expect = 3e-73, Method: Composition-based stats. Identities = 139/240 (57%), Positives = 181/240 (75%), Gaps = 2/240 (0%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPRE 63 + +VR+NKY+SESGICSRREAD I +G V ++G+ A +G +V PG V + + + Sbjct: 16 EKAVRINKYLSESGICSRREADTRIAKGEVTIDGEVAVMGSKVLPGQKVVLGKKEVS--R 73 Query: 64 AEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLV 123 E +VLIA +KP GIV TTE E DNI+D++ +S+R++PIGRLDKDS+GLIFLTN+GD+V Sbjct: 74 EEKMVLIAFHKPKGIVCTTEKREPDNIIDYIKYSQRIYPIGRLDKDSEGLIFLTNNGDIV 133 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQ 183 NKILRAGN HEKEY+VTV+KPIT F++GM+ GVPIL TVTK C ++ FRI L Q Sbjct: 134 NKILRAGNHHEKEYIVTVNKPITAAFLKGMAGGVPILDTVTKPCTLEAIDKVTFRIILTQ 193 Query: 184 GLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSSSEV 243 GLNRQIRRMCEHF Y+V KL R RIMNV+L + +G +R+LTD EL + + IE S++E Sbjct: 194 GLNRQIRRMCEHFDYKVTKLVRIRIMNVNLGRLKVGGYRNLTDKELEGIKEQIELSNNEA 253 >UniRef50_Q3IC94 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q3IC94_PSEHT Length = 327 Score = 276 bits (706), Expect = 7e-73, Method: Composition-based stats. Identities = 145/306 (47%), Positives = 189/306 (61%), Gaps = 25/306 (8%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAEDL 67 RLNK+IS++G CSRREAD+YIE G V +NG R +G +V DVV V+G+ ++ Sbjct: 6 RLNKFISDTGFCSRREADKYIEDGRVTVNGIRPEMGVKVSSTDVVLVDGKTLKAI--PKR 63 Query: 68 VLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNKIL 127 V IA NKPVGI TTE + NIV VN+ R+FPIGRLD+ S+GLIFLTN GD+VNKIL Sbjct: 64 VYIAYNKPVGITCTTERKIQSNIVKAVNYPDRIFPIGRLDRPSEGLIFLTNEGDIVNKIL 123 Query: 128 RAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQGLNR 187 RAGN+HEKEY+VTVDKP+ +F+ M GVPIL T+TKKCKV + F I L QGLNR Sbjct: 124 RAGNNHEKEYVVTVDKPLNRQFVAKMGNGVPILDTITKKCKVTQTGAQQFTIILTQGLNR 183 Query: 188 QIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSSS------ 241 QIRRMCE+ GYEV L+R RIMNV+L G+ +G+WR LT+ E+ + I +S Sbjct: 184 QIRRMCEYLGYEVVTLKRVRIMNVTLKGLKVGQWRHLTEQEMAIINNSISDSGKTQEHSV 243 Query: 242 --------EVKPKAKAKPKTAGIK---------RPVVKMEKTAEKGGRPASNGKRFTSPG 284 + P+A AKP+ K + + E+T E+ + + S Sbjct: 244 YDEANALQQQSPQAVAKPQKTSDKKRDFQGENPKRFNQGERTEERKKERSKTPYQKRSTT 303 Query: 285 RKKKGR 290 K + Sbjct: 304 YVGKPK 309 >UniRef50_B3E7C4 Pseudouridine synthase n=6 Tax=Desulfuromonadales RepID=B3E7C4_GEOLS Length = 274 Score = 269 bits (689), Expect = 7e-71, Method: Composition-based stats. Identities = 88/269 (32%), Positives = 145/269 (53%), Gaps = 16/269 (5%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKP-GDVVKVNGQLIEPREAE 65 RL K IS +GI SRR A+ I G V +NG+ T +G + P D++ ++GQ ++P AE Sbjct: 4 RLQKIISAAGITSRRAAEEMILAGRVTVNGQVVTELGSKADPAKDLIALDGQPVKP--AE 61 Query: 66 DLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTNHGDLV 123 + L+KP G V++ +D + R + + V +R+FP+GRLD +S+GL+ LTN G Sbjct: 62 TFYYVLLHKPAGYVTSLKDPQGRQLVTELVKDVGERLFPVGRLDYNSEGLLLLTNDGAWA 121 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK----KEAPFVFRI 179 N+++ + +KEY V V I + I+ ++ GV + T V+ ++ + Sbjct: 122 NRLMHPRHQVDKEYHVRVRGKIDPQQIKKLADGVELEDGPTGATTVRLLKNDQSNDWLSV 181 Query: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDL------F 233 T+ +G NRQ+RRMC G V +L R R N++L G+ GE+R L+ +E L Sbjct: 182 TIREGRNRQVRRMCAAVGLFVVRLRRIRYGNLTLGGLQPGEYRLLSREEAQALDAPPPVK 241 Query: 234 KLIENSSSEVKPKAKAKPKTAGIKRPVVK 262 + + ++ VK + +T G + P K Sbjct: 242 QREQRMAAPVKSSTTPQSQTPGKRPPRRK 270 >UniRef50_C5EVC9 Pseudouridine synthase n=6 Tax=Clostridiales RepID=C5EVC9_9FIRM Length = 294 Score = 268 bits (685), Expect = 2e-70, Method: Composition-based stats. Identities = 121/258 (46%), Positives = 174/258 (67%), Gaps = 8/258 (3%) Query: 9 LNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLI-----EPRE 63 LNK++S+ G+CSRREADR IE G V+++G A +G +VKPG V +G + Sbjct: 36 LNKWLSQMGVCSRREADRLIEAGKVWVDGSPAAMGQKVKPGQKVVCDGVPVNGGSGADSR 95 Query: 64 AEDLVLIALNKPVGIVSTTEDGERD-NIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDL 122 VL+ +NKP GIV TT D +R NIV+++++ +R++P+GRLDKDS+GL+ +TN GDL Sbjct: 96 KPKPVLLVVNKPRGIVCTTSDKDRAMNIVEYLDYPERIYPVGRLDKDSEGLLLMTNQGDL 155 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI--LGTVTKKCKVKKEAPFVFRIT 180 VNKI+R+GN HEKEY+VTVD+P+T++ + M+ G+ + L TVT+ CKVK+ F I Sbjct: 156 VNKIMRSGNAHEKEYIVTVDRPLTDDAMDRMAKGIYLRELETVTRPCKVKRVDGKTFSII 215 Query: 181 LVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSS 240 L QGLNRQIRRMCE G V++L R RIMN+ L G+ G R++ +E +L +L+ +SS Sbjct: 216 LTQGLNRQIRRMCEACGCHVERLVRVRIMNIRLDGLETGASREVGQEEYRELMRLLRDSS 275 Query: 241 SEVKPKAKAKPKTAGIKR 258 S + +A P A + Sbjct: 276 SLPGGRGRAVPHKARTVK 293 >UniRef50_B2A4P2 Pseudouridine synthase n=2 Tax=Clostridia RepID=B2A4P2_NATTJ Length = 238 Score = 267 bits (683), Expect = 3e-70, Method: Composition-based stats. Identities = 84/235 (35%), Positives = 139/235 (59%), Gaps = 7/235 (2%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEPREA 64 +RL K++S +GI SRR+++ I+QG V +NG+ T +G ++ P D VKV+G+ I E+ Sbjct: 1 MRLQKFMSRAGIASRRKSEELIQQGRVTVNGQVITRLGTKINPDTDTVKVDGEPITQEES 60 Query: 65 EDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLV 123 V I LNKP +++ +D + R ++D + +RV+P+GRLD DS+GL+ LTN G+L Sbjct: 61 N--VYIMLNKPKDYITSKDDPQGRKTVMDLIQVKERVYPVGRLDYDSRGLVLLTNDGELA 118 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA--PFVFRITL 181 N+++ + K Y+V VDK ++ + + G+ + + K V+ + +I L Sbjct: 119 NRLMHPKYNIPKTYMVKVDKLPLQDKLDNLVNGIYLEEGLCKADHVEILDTKNNILKIIL 178 Query: 182 VQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLI 236 +G RQIRRM G EVK L+R + ++L + G +R LT DE+ ++ KL Sbjct: 179 SEGRKRQIRRMLASLGIEVKDLKRDSLGTLTLKDLSEGNYRKLTKDEIDNIKKLA 233 >UniRef50_C8P160 Pseudouridine synthase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P160_ERYRH Length = 262 Score = 266 bits (680), Expect = 7e-70, Method: Composition-based stats. Identities = 124/240 (51%), Positives = 160/240 (66%), Gaps = 8/240 (3%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREA 64 S+RLNKYIS+SG CSRR+ADR+I +G V ++G AT+G QV PG V V G + Sbjct: 24 ESLRLNKYISDSGYCSRRQADRFIAEGVVAIDGVTATVGQQVLPGQRVTVEGNHVTID-- 81 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVN 124 ++ V IALNKP GI TT+ NI DF+N+ K +FPIGRLDKDS GLI LTN GD+VN Sbjct: 82 DEKVYIALNKPRGITCTTDGAIEGNISDFMNYPKMIFPIGRLDKDSSGLILLTNDGDIVN 141 Query: 125 KILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILG------TVTKKCKVKKEAPFVFR 178 KILR H+KEY+V+V+K I E+FI MS GV I VT V++ AP FR Sbjct: 142 KILREEYGHDKEYIVSVNKTIDEDFITKMSKGVEIYNQQTHRMQVTNPSDVEQVAPKTFR 201 Query: 179 ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIEN 238 I L QGLNRQIRRM + G++V L R RIMN++L + +GEWR L+ EL ++ + I++ Sbjct: 202 IVLNQGLNRQIRRMTKALGFKVTTLNRVRIMNINLGDLKVGEWRYLSVHELEEMNRRIQS 261 >UniRef50_A5IKF7 Pseudouridine synthase n=5 Tax=Thermotogaceae RepID=A5IKF7_THEP1 Length = 239 Score = 265 bits (679), Expect = 1e-69, Method: Composition-based stats. Identities = 80/243 (32%), Positives = 137/243 (56%), Gaps = 8/243 (3%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEPREAE 65 +RL++Y+S SG+ +R+E + I+QG V +NG+ G V DVV ++G+ + Sbjct: 1 MRLDRYLSNSGVGTRKEVKKLIKQGRVTVNGRVVLDPGHSVSENDVVVLDGETVNFH--- 57 Query: 66 DLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNK 125 V I +KP G V++T+D + I++F+ K +FP+GRLDKD++GL+ +T+ GD ++ Sbjct: 58 RKVYILFHKPSGYVTSTKDPHSETIMEFLPPLKGIFPVGRLDKDAEGLLIITSDGDFAHR 117 Query: 126 ILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCK-VKKEAPFVFRITLVQG 184 ++ EKEY+V V+ +TE+ I + GV + K K V+K + +I + +G Sbjct: 118 VISPKWSVEKEYIVKVEGEVTEDKIEKLKNGVTLRDGFFAKAKCVEKLSNDTLKIVITEG 177 Query: 185 LNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDELIDLFKLIENSSSEV 243 QI+RM G L+RTRI + L + GE+R L+++E+ +F+ E Sbjct: 178 KYHQIKRMTVAVGLRTVHLKRTRIGRLVLPEDMKPGEYRFLSEEEVKKVFE--REDQKED 235 Query: 244 KPK 246 P+ Sbjct: 236 TPR 238 >UniRef50_A8SLU4 Pseudouridine synthase n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SLU4_9FIRM Length = 230 Score = 264 bits (676), Expect = 2e-69, Method: Composition-based stats. Identities = 89/232 (38%), Positives = 141/232 (60%), Gaps = 5/232 (2%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAED 66 +R+NK+I+ SG CSRR AD +EQG VF+NGK AT G + D V V G+ I+ EA+ Sbjct: 1 MRINKFIANSGYCSRRNADLLLEQGKVFVNGKLATKGIDISENDEVLVEGKKIKLEEAKK 60 Query: 67 LVLIALNKPVGIVSTTEDG-ERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNK 125 LNKP+G ST + + ++D ++ +R++P+GRLDKDS GL+ LTN GDL + Sbjct: 61 --YYLLNKPIGYSSTAKAQFQEKIVLDLIDSKERIYPVGRLDKDSFGLLLLTNDGDLAFR 118 Query: 126 ILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA--PFVFRITLVQ 183 + ++ EKEY+V VDK + E ++ +S+G+ + G +T+K + + + ++ L + Sbjct: 119 LTHPSHNVEKEYIVKVDKTLKESDLKKLSSGIMLEGKITRKARFEMLDFKSNIVKVFLKE 178 Query: 184 GLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 G NRQIR+M + Y V LER + L + +G +R+L+ +E+ L L Sbjct: 179 GRNRQIRKMFKTLDYNVISLERIAFGKIKLGKLKVGNYRELSKEEIEYLRSL 230 >UniRef50_A8ZRV1 Pseudouridine synthase n=3 Tax=Desulfobacteraceae RepID=A8ZRV1_DESOH Length = 241 Score = 263 bits (673), Expect = 4e-69, Method: Composition-based stats. Identities = 93/232 (40%), Positives = 134/232 (57%), Gaps = 4/232 (1%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEPR 62 +RL K++S +G+CSRR A+ YI +G V +NG+ T +G +V P D V +G + Sbjct: 8 GQIRLQKFLSGAGVCSRRRAEVYIAEGRVAVNGQVVTELGTKVDPESDDVMFDGHRVTL- 66 Query: 63 EAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDL 122 AE V IALNKP G V++ + +++ V +RVFP+GRLDK S GL+ +T+ G L Sbjct: 67 -AESHVYIALNKPPGYVTSCLQKQETTVMELVAVDQRVFPVGRLDKPSCGLLLMTSDGGL 125 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLV 182 ++ DHEKEY V D+P+++ + M G+ I G T+ KVK+ + F I L Sbjct: 126 HQRLSHPSFDHEKEYDVACDRPVSDADLDAMRRGMVITGRKTRPAKVKRLSDRRFLIILQ 185 Query: 183 QGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFK 234 +G NRQIRRM E G V L R RI ++ L + G WR LT++E L Sbjct: 186 EGRNRQIRRMAEMLGNRVVLLRRIRIAHIHLGDLAEGRWRYLTEEEKKALLH 237 >UniRef50_UPI000196BAD7 hypothetical protein CATMIT_00510 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196BAD7 Length = 247 Score = 263 bits (672), Expect = 6e-69, Method: Composition-based stats. Identities = 84/239 (35%), Positives = 129/239 (53%), Gaps = 12/239 (5%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREA 64 RL K I++SG SRR+A+ I+QG V +NG+ T +G +V D + VNG+LI Sbjct: 2 EERLQKVIAQSGYTSRRKAEELIQQGKVTVNGEVVTVLGTKVTKKDTICVNGKLIN---K 58 Query: 65 EDLVLIALNKPVGIVSTTED-GERDNIVD-FVNHSKRVFPIGRLDKDSQGLIFLTNHGDL 122 ED V KP V T D +R + D F + ++RV+P+GRLD D+ G +F+TN G+ Sbjct: 59 EDKVYYLFYKPEKCVCTMSDEHDRTCVADYFADSNERVYPVGRLDYDTTGALFMTNDGEF 118 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKV------KKEAPFV 176 N I+ + EK Y V+V +T+ + G+ + G T C++ ++ + Sbjct: 119 ANLIMHPSSHLEKVYEVSVKGLLTKAEKNQLEKGIYLEGVKTLPCEIAITGNDEEHGTTM 178 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 I LV+G NRQI++M E G+ VK+L R I + L G+ G +R L E+ L + Sbjct: 179 LLIRLVEGKNRQIKKMFEEVGHPVKRLRRIMIGPIDLKGLTPGTYRRLKPHEVNVLRTM 237 >UniRef50_B0TFD8 Pseudouridine synthase n=18 Tax=Bacteria RepID=B0TFD8_HELMI Length = 333 Score = 263 bits (672), Expect = 7e-69, Method: Composition-based stats. Identities = 90/301 (29%), Positives = 147/301 (48%), Gaps = 14/301 (4%) Query: 2 LPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVK-PGDVVKVNGQLI 59 + +VRL K ++ G+ SRREA+ I G V +NG G +V DV++V+G+++ Sbjct: 1 MDSQTVRLQKLLAAHGVASRREAEAMIRAGRVRINGTVVREQGVRVDGARDVIEVDGRIL 60 Query: 60 EPREAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLT 117 + REA + AL KP G+V+T +D + R ++ ++ ++RV+P+GRLD+D++GL+ LT Sbjct: 61 KRREAP--LYYALYKPRGVVTTCKDPQGRQTVIGLLSGVNERVYPVGRLDRDTEGLLLLT 118 Query: 118 NHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKV----KKEA 173 N G L ++ EK Y + ++ ++ ++ GV + VT +V ++ Sbjct: 119 NDGQLAFRLTHPRFGVEKTYRARLRGDVSAGALKALAEGVQLEDGVTAPAQVRLLRREGD 178 Query: 174 PFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF 233 I + +G RQIRRM + G+ V LER ++L + GE R LT EL L Sbjct: 179 ATWIEIKIHEGRKRQIRRMGDAIGHPVIDLERIAFGPITLGKLKPGEVRPLTSAELRALK 238 Query: 234 KLIENSSSEVKP----KAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKG 289 + + A+P V K A KG G R S G +G Sbjct: 239 SAAGMKEATAHGRDERRQTARPSRTAATAKVASAHKDAGKGVFKGLKGLREASNGGDGRG 298 Query: 290 R 290 + Sbjct: 299 K 299 >UniRef50_D1CFA0 Pseudouridine synthase n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CFA0_THET1 Length = 253 Score = 261 bits (668), Expect = 2e-68, Method: Composition-based stats. Identities = 82/239 (34%), Positives = 135/239 (56%), Gaps = 8/239 (3%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEPR 62 + +RL+K +++ G+ SRR A+R I +G V +NG+ T G P D ++V+G+L+ R Sbjct: 2 NEPIRLHKLLAQMGVASRRAAERMIAEGRVSVNGRIVNTPGAMASPEDEIRVDGKLV--R 59 Query: 63 EAEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGD 121 + + I LNKP G++ST +D R ++D + S RV+P+GRLDKDS+GL+ LTN G+ Sbjct: 60 QQPKMRYILLNKPAGVLSTAKDERGRKTVIDLLGQSNRVYPVGRLDKDSEGLMLLTNDGE 119 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA----PFVF 177 L +I K+Y+V V+ ++ ++ + GV + +K K + Sbjct: 120 LAQRITHPRYGVHKQYMVEVEGYFSDRSLQDLLQGVELEDGFSKPLDAKIISRSRDKSKL 179 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLI 236 IT+ +G RQ+RR GY+VK+L R + +SL + GE+R+L+D E L + Sbjct: 180 LITMGEGRKRQVRRTLAALGYKVKRLTRVALGPLSLGNLKPGEYRELSDQEAKWLRSQL 238 >UniRef50_A5ZYR1 Pseudouridine synthase n=2 Tax=Clostridiales RepID=A5ZYR1_9FIRM Length = 315 Score = 261 bits (668), Expect = 2e-68, Method: Composition-based stats. Identities = 130/303 (42%), Positives = 182/303 (60%), Gaps = 19/303 (6%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREA 64 +++R+NKY+S +G+CSRREAD+ + G V + GK G+++ V ++G+ ++ Sbjct: 11 TTIRINKYLSAAGVCSRREADQLTDAGRVTVAGKEIGTGERIPADAEVFLDGRPVKAETR 70 Query: 65 EDLVLIALNKPVGIVSTTE-DGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLV 123 + VL+ KP GIV +T+ + + +F+++ RV+P+GRLDKDS+GL+ LTN GDLV Sbjct: 71 Q--VLLLFYKPRGIVCSTKKQRQETTVTEFLDYPVRVYPVGRLDKDSEGLLLLTNQGDLV 128 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQ 183 N+I+RAGN HEKEY VTVDK ITE FIR MS+GVPILGTVT+ C V K F I L Q Sbjct: 129 NRIMRAGNYHEKEYEVTVDKKITETFIRKMSSGVPILGTVTRPCTVYKTGDKSFSIILTQ 188 Query: 184 GLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSSSEV 243 GLNRQIRRMCE+ GY V L+R RIMN++L G+ GE+R++ DE L +LI +SSSE Sbjct: 189 GLNRQIRRMCEYLGYHVCTLKRIRIMNLTLDGLKCGEYREICGDEWKKLNELIRDSSSET 248 Query: 244 KPK-----AKAKPKTAGIKRPVVKMEKTAEKGGRPA-----------SNGKRFTSPGRKK 287 + K +T + GRP + + R + Sbjct: 249 VIRTGGQHGKISGRTNKRTGAEAERSGKGILSGRPGDHEQQRVRRTVRSTGKNGKRNRNR 308 Query: 288 KGR 290 GR Sbjct: 309 SGR 311 >UniRef50_C6JI84 Pseudouridine synthase n=2 Tax=Fusobacterium RepID=C6JI84_FUSVA Length = 236 Score = 261 bits (667), Expect = 2e-68, Method: Composition-based stats. Identities = 89/236 (37%), Positives = 142/236 (60%), Gaps = 6/236 (2%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREA 64 +R+NKY++ GI SRRE D+ IE+G++ +NG++AT G +V D + + G+ IE + Sbjct: 2 EEMRINKYLASLGIASRREVDKMIEEGSIKINGEKATPGIKVSDKDEIYIRGKKIE-KHT 60 Query: 65 EDLVLIALNKPVGIVSTT-EDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLV 123 E V LNKP+ ++S++ +D R +VD +N +R+FPIGRLD ++ GLI LTN G+L Sbjct: 61 EKKVYYILNKPLEVLSSSKDDRGRKTVVDLINCKERIFPIGRLDYNTSGLIILTNDGELF 120 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKV----KKEAPFVFRI 179 N+I+ + KEY V V I E + + GV + +T V +++ + Sbjct: 121 NRIIHPKAEIFKEYYVKVLGEIKENNVELLKNGVELDDGITLPANVRILRREKGKTELLV 180 Query: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 + +G NRQ+RRM + + V L R +I N+SL + LGE+R+LT+DE+ L+ L Sbjct: 181 AIREGRNRQVRRMMDKINHPVITLRREKIGNLSLGNLKLGEYRELTNDEINYLYSL 236 >UniRef50_A0PYR9 Pseudouridine synthase n=9 Tax=Clostridium RepID=A0PYR9_CLONN Length = 229 Score = 260 bits (666), Expect = 3e-68, Method: Composition-based stats. Identities = 112/230 (48%), Positives = 153/230 (66%), Gaps = 3/230 (1%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAED 66 +R+NK +S GICSR+EA+R IEQ + +NGK G V+ D + ++ + I+P + Sbjct: 1 MRINKLLSNYGICSRKEANRIIEQNRIIVNGKLCIPGQWVEESDEILLDNKRIKP---KK 57 Query: 67 LVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNKI 126 V I LNKPVGI T+ + NI+DFVN+ +FP+GRLDK S+GLI LTN G+L NKI Sbjct: 58 KVYILLNKPVGITCTSSKDIKANIIDFVNYRDYIFPVGRLDKKSEGLIILTNDGELSNKI 117 Query: 127 LRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQGLN 186 L + N HEKEY+V VDKP +EFI MS GV + G T+ C V++ F+I L QGLN Sbjct: 118 LESENMHEKEYVVKVDKPFDDEFIENMSKGVQLKGVKTRTCIVRRIDECTFKIILTQGLN 177 Query: 187 RQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLI 236 RQIR+M FGY V KL+R RIMN+ + GI +G +R T+DEL ++ ++ Sbjct: 178 RQIRKMTRAFGYTVVKLKRIRIMNLKIDGIDIGSFRHFTEDELNNIRVMV 227 >UniRef50_Q24V73 Pseudouridine synthase n=3 Tax=Bacteria RepID=Q24V73_DESHY Length = 257 Score = 260 bits (666), Expect = 3e-68, Method: Composition-based stats. Identities = 76/245 (31%), Positives = 135/245 (55%), Gaps = 11/245 (4%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEP 61 P RL K ++++GI SRR A+ I QG V +NG+ T+G +V D + V+G+L+ Sbjct: 12 PRQEERLQKVLAQAGIASRRHAEEIILQGRVKVNGEVIRTLGTKVVSTDRIVVDGRLLSI 71 Query: 62 REAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTNH 119 + D L+KP G +++ D + R +++ + +RV+P+GRLD D+ GL+ LTN Sbjct: 72 PQN-DYAYYLLHKPTGYITSVTDPQGRKTVMELMPKIPRRVYPVGRLDYDTSGLLLLTND 130 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPF---- 175 GDL ++++ EK Y V V + I E+ ++ + GV + T ++++ +P Sbjct: 131 GDLAHRLMHPSYGVEKTYRVEVGEKIPEQALKRLEKGVLLEDGKTAPARIREVSPKGRGS 190 Query: 176 --VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDL 232 + IT+ +G NRQ+RRM + G+ + L+R R + L + G +R L+ E+ L Sbjct: 191 LPTYEITIHEGRNRQVRRMFKAVGFPLSTLKRLRFGPLELDPSLAPGAFRTLSKTEIQHL 250 Query: 233 FKLIE 237 + ++ Sbjct: 251 RRAVK 255 >UniRef50_D1Y0J0 Pseudouridine synthase n=1 Tax=Prevotella bivia JCVIHMP010 RepID=D1Y0J0_9BACT Length = 555 Score = 260 bits (665), Expect = 4e-68, Method: Composition-based stats. Identities = 80/238 (33%), Positives = 131/238 (55%), Gaps = 10/238 (4%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEP 61 P +RLNK+++ +G+CSRREAD +I G V +NG+ +G ++ D VK +L+ Sbjct: 316 PTEPLRLNKFLANAGVCSRREADDFILAGQVTVNGEVINELGTKILRTDEVKFQDKLVSL 375 Query: 62 REAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH--SKRVFPIGRLDKDSQGLIFLTN 118 E V + LNKP V+T++D + R ++D V +R++P+GRLD+++ G++ TN Sbjct: 376 ---EKKVYVLLNKPKDYVTTSDDPQQRKTVMDLVKDACPERIYPVGRLDRNTTGVLLFTN 432 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAP---F 175 GDL +K+ +K Y V +DKPIT ++ +S G+ + K ++ P Sbjct: 433 DGDLASKLTHPKFLKKKVYHVFLDKPITANELQKISDGIELEDGEIKADAIEYANPEDQA 492 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF 233 I + G NR +RR+ E GY V KL+R ++ + G+WR LT+ E+ L Sbjct: 493 QVGIEIHSGKNRIVRRIFESLGYRVVKLDRVMFAGLTKKNVRRGDWRFLTEKEVEMLR 550 >UniRef50_C7MNA2 Pseudouridine synthase n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MNA2_CRYCD Length = 296 Score = 260 bits (665), Expect = 4e-68, Method: Composition-based stats. Identities = 75/250 (30%), Positives = 127/250 (50%), Gaps = 11/250 (4%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKP-GDVVKVNGQLIEP 61 D +RL K+++ +G+ SRR ++R I G V +NG T +G +V P D V V+G ++ Sbjct: 47 DFPLRLQKFLARAGVASRRGSERLISAGRVAVNGIVITELGTKVDPLVDEVCVDGAIVT- 105 Query: 62 REAEDLVLIALNKPVGIVSTTED-GERDNIVDFVN--HSKRVFPIGRLDKDSQGLIFLTN 118 V +ALNKP GI++T +D R + D + +FPIGRLD+D+ GL+ + Sbjct: 106 -WGAPAVTLALNKPAGIITTMKDLRGRRCVADIMPTEQYPGLFPIGRLDQDTTGLLLFST 164 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAP---- 174 G+L N +L + K Y T++ I + + +++G+ + +T +V Sbjct: 165 DGNLGNALLHPSHGVSKVYRATIEGSIGQAALEQLASGILLDDGMTAPARVSVVQAGKKH 224 Query: 175 FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFK 234 V + L +G Q++RMC+ G+ V KL R + L+G+ G +R L EL L+ Sbjct: 225 SVIELELHEGRKHQVKRMCQAVGHPVVKLHRASFGPIDLAGLATGAYRRLEGAELSVLYN 284 Query: 235 LIENSSSEVK 244 + + Sbjct: 285 AAGLCCPDDE 294 >UniRef50_A5TWE7 Pseudouridine synthase n=10 Tax=Fusobacterium RepID=A5TWE7_FUSNP Length = 234 Score = 260 bits (665), Expect = 4e-68, Method: Composition-based stats. Identities = 83/234 (35%), Positives = 137/234 (58%), Gaps = 5/234 (2%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAED 66 +R+NK++S GI SRR D+YIE+G + +NG AT G + D + ++G+ I+ E+ Sbjct: 1 MRINKFLSTLGIASRRAIDKYIEEGRITVNGNTATTGMDINENDNIFIDGKKIKTSINEE 60 Query: 67 LVLIALNKPVGIVSTT-EDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNK 125 V LNKP+ ++S++ +D R +VD + KR+FPIGRLD + GLI LTN G+L N+ Sbjct: 61 KVYFMLNKPLEVLSSSSDDRGRKTVVDLIKTDKRIFPIGRLDYMTSGLILLTNDGELFNR 120 Query: 126 ILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK----KEAPFVFRITL 181 ++ ++ K+Y + + + +E I + GV + T K+ + I++ Sbjct: 121 VVHPKSEIYKKYYIKILGELKKEEIDELKKGVLLDDGKTLPAKISGIKYDKNKTSMFISI 180 Query: 182 VQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 +G NRQIRRM E F Y+V L R +I ++L +P G++R+LT E+ L+ + Sbjct: 181 REGRNRQIRRMIEKFEYKVLMLRREKIGELALGDLPEGKYRELTKQEVEYLYSI 234 >UniRef50_B8G2X0 Pseudouridine synthase n=3 Tax=Bacteria RepID=B8G2X0_CHLAD Length = 567 Score = 259 bits (663), Expect = 7e-68, Method: Composition-based stats. Identities = 101/281 (35%), Positives = 142/281 (50%), Gaps = 20/281 (7%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVK-PGDVVKVNGQLIEPR 62 S RL K ++ +GI SRR+ + I G V +NG+ T G +V D V V+GQ + R Sbjct: 2 SPERLQKVLASAGIASRRDCEELIAAGRVTVNGRVVTVPGTRVDLEHDEVLVDGQPL--R 59 Query: 63 EAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGD 121 I L+KP G+VST ED R +VD V+ RVFP+GRLD DS+GLI LT+ G+ Sbjct: 60 MPAKRTYIMLHKPAGVVSTAEDPHGRPTVVDLVDVPARVFPVGRLDLDSEGLILLTDDGE 119 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPF----VF 177 L + + EKEY V +D+ +T + +R GV + G +T V+ Sbjct: 120 LAYALTHPSFEVEKEYRVLLDRALTPDALRSWRNGVLLEGEMTAPAWVELLETTPEGVWV 179 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIE 237 RI L +G RQIR + + GYEV++L R R + L +P WR LTD+E+ L + Sbjct: 180 RIVLREGRKRQIRAVAKLLGYEVRRLVRVREGPLQLGDLPPRAWRHLTDEEVAALRAHVS 239 Query: 238 ----------NSSSEVKPKA-KAKPKTAGIKRPVVKMEKTA 267 S+ VK +A KP AG PV + Sbjct: 240 VRRSLADVPTRSTDVVKSRALDEKPHRAGDSAPVTRQRSEH 280 >UniRef50_UPI0001693918 pseudouridylate synthase n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001693918 Length = 249 Score = 259 bits (663), Expect = 8e-68, Method: Composition-based stats. Identities = 80/251 (31%), Positives = 132/251 (52%), Gaps = 13/251 (5%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPG-DVVKVNGQLIEPRE 63 RL K ++ +G+ SRR+ + I G V +N K T+G +V P DV+KV+G+ I+ Sbjct: 2 EERLQKVLAAAGVASRRKCEEIILAGRVEVNDKVVSTLGVKVNPHQDVIKVDGRAIQ--- 58 Query: 64 AEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTNHGD 121 ++ + I NKP G++++ D E R + DF+ +RV+P+GRLD D++GL+ LTN G+ Sbjct: 59 NQEKIYILFNKPKGVITSVSDPEGRRVVGDFLKGIKERVYPVGRLDYDTEGLLILTNDGE 118 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA------PF 175 N + + K Y TV + + GV + +T +V+ Sbjct: 119 FANMVTHPRHHVSKTYHATVKGVPHGSVLEKLREGVKLEDGMTAPAEVEYHDIDPDKKQS 178 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 V IT+ +G NRQ+RRM E GY V +L+R + ++ L G+P G++R + +E+ L Sbjct: 179 VISITIYEGKNRQVRRMFEAVGYPVTRLKRVKFGSIPLVGLPRGKFRRMRKEEVQALLNE 238 Query: 236 IENSSSEVKPK 246 S K + Sbjct: 239 ASQSHKVQKGQ 249 >UniRef50_B2RK43 Pseudouridine synthase n=1 Tax=Porphyromonas gingivalis ATCC 33277 RepID=B2RK43_PORG3 Length = 439 Score = 259 bits (662), Expect = 9e-68, Method: Composition-based stats. Identities = 80/238 (33%), Positives = 137/238 (57%), Gaps = 10/238 (4%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEP 61 P+ +RLNK++S +G+CSRREAD IE+G + +NG+ T +G ++ D V + +E Sbjct: 200 PNEPIRLNKFLSNAGVCSRREADLLIEKGEITVNGEVVTELGRRITRQDEVIYKDKRVEI 259 Query: 62 REAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH--SKRVFPIGRLDKDSQGLIFLTN 118 E V + LNKP V+T++D E R ++D V + +R++P+GRLD+++ G++ +TN Sbjct: 260 ---ESKVYVLLNKPKNCVTTSDDPECRTTVMDIVRYACPERIYPVGRLDRNTTGVLLITN 316 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVT---KKCKVKKEAPF 175 GDL +K+ +K Y V ++K ++ E ++ ++ GV + VK++ Sbjct: 317 DGDLASKLTHPSFKKKKIYHVWLNKDVSIEDMQKIADGVELDDGEIHADAISYVKEDDLS 376 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF 233 I + G NR +RR+ EH GY V KL+R ++ +P G+WR L + E+ +L Sbjct: 377 QVGIEIHSGRNRIVRRLFEHLGYRVVKLDRVYFAGLTKKNLPRGKWRYLNEQEVNNLR 434 >UniRef50_B3U4L2 Pseudouridine synthase n=3 Tax=Bacteria RepID=B3U4L2_9BACT Length = 420 Score = 259 bits (662), Expect = 9e-68, Method: Composition-based stats. Identities = 99/293 (33%), Positives = 150/293 (51%), Gaps = 14/293 (4%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEPREA 64 VRL K I+ +G+ SRR+A+ I G V +NG +G +V P D VKV+G+ + R A Sbjct: 3 VRLQKLIAGTGLASRRKAEELITSGRVTINGSVVKELGTKVDPARDHVKVDGKHL--RAA 60 Query: 65 EDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTNHGDL 122 + V + LNKP ++ST +D E R + D ++ + RVFP+GRLD DS+GL+ LTNHGDL Sbjct: 61 QPYVYLILNKPKNVMSTLDDPEGRPTVKDLLHGVTVRVFPVGRLDFDSEGLMLLTNHGDL 120 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKK----EAPFVFR 178 +L K YL+ V + + I + GV + T KVKK E+ Sbjct: 121 AQALLHPRYHVPKTYLIKVKGVLDDAKIEALERGVKLEDGFTAPAKVKKVSRAESNSWLE 180 Query: 179 ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIEN 238 +T+ +G Q++RM E G+ V KL R R+ + L + E+R LTD E L +L+E+ Sbjct: 181 VTIHEGRKHQVKRMVEAVGHSVIKLVRVRMGPLLLGDLAPREYRFLTDREANRLRELVED 240 Query: 239 SSSEV-KPKAKAKPKTAG---IKRPVVKMEKTAEKGGRPASNGKRFTSPGRKK 287 + +P+ A K P E+ GR + + P ++ Sbjct: 241 RVARAERPELDASGKPTRWMPPTEPAPPRPPKPERSGRGPKSQRSERGPRSQR 293 >UniRef50_C8WXC0 Pseudouridine synthase n=3 Tax=Firmicutes RepID=C8WXC0_ALIAD Length = 273 Score = 259 bits (662), Expect = 1e-67, Method: Composition-based stats. Identities = 86/271 (31%), Positives = 137/271 (50%), Gaps = 15/271 (5%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEPREAE 65 RL K ++ +G+ SRR+ + I G V ++G+ T +G +V P + V+G IE E Sbjct: 3 RLQKVLAHAGVASRRKCEELILAGRVSVDGEIVTQLGAKVDPSRQRIAVDGVPIEL---E 59 Query: 66 DLVLIALNKPVGIVSTTEDG-ERDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTNHGDLV 123 V++ LNKPV +ST D R ++ + +RV+P+GRLD D+ GL+ TN G+L Sbjct: 60 QPVVLVLNKPVAYLSTVSDPLGRRTVMQLLPPIRERVYPVGRLDYDTSGLLLFTNDGELT 119 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK-------KEAPFV 176 ++L + EK Y V+V + E R + GV + VT KV+ ++ V Sbjct: 120 QRLLHPSREIEKVYRVSVRGIVDRETRRALMEGVELEDGVTAPAKVEVLRQADREDGVAV 179 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLI 236 + + +G NRQ+RRM E G V +L+R VSL + GEWR LT +E + L++ Sbjct: 180 VHLAIHEGRNRQVRRMFERLGLPVLRLKRIAFGPVSLGHLKTGEWRALTQEEWVALYQAA 239 Query: 237 ENSSSE-VKPKAKAKPKTAGIKRPVVKMEKT 266 + +P +P G R + + Sbjct: 240 GMTPPPYRRPTISREPARKGAARASARDHGS 270 >UniRef50_A4J3M3 Pseudouridine synthase n=167 Tax=Bacteria RepID=A4J3M3_DESRM Length = 309 Score = 258 bits (661), Expect = 1e-67, Method: Composition-based stats. Identities = 96/302 (31%), Positives = 155/302 (51%), Gaps = 19/302 (6%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKP-GDVVKVNGQLIEPRE 63 RL K ++++G+ SRR ++ I G V +NGK T +G +V P D ++V G+ + P E Sbjct: 2 EERLQKILAKAGVASRRHSEELIISGQVKVNGKTVTEMGLKVDPTKDKIEVKGKPLPPLE 61 Query: 64 AEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHSK-RVFPIGRLDKDSQGLIFLTNHGD 121 + V + +NKP G V+T D +R +VD + + RV+P+GRLD DS+GL+ LTN G+ Sbjct: 62 KK--VYLLMNKPRGYVTTLSDERDRKTVVDLLKGVEQRVYPVGRLDYDSEGLLLLTNDGE 119 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK----KEAPFVF 177 L + + +K YL VD E ++ M+ G+ + T V+ + + Sbjct: 120 LTQALTHPKHKVKKTYLAKVDGIPETEELKAMAKGLVLEDGPTAPADVRLAGTGDNRALL 179 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLI- 236 I++ +G NRQ+RRMCEH GY+V +L RTRI + L + GE R LT EL +L L+ Sbjct: 180 EISIHEGRNRQVRRMCEHIGYKVLRLRRTRIGTLELGSLKSGEVRALTKKELRELASLVG 239 Query: 237 --------ENSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKK 288 + ++ K K + IK V + + + ++ T G+ K Sbjct: 240 LKQNYNDMQLTTEVQKKKPSPCGRVGRIKGKVSEQKSNRSAKSKVNEFFEKGTLRGKNSK 299 Query: 289 GR 290 + Sbjct: 300 SK 301 >UniRef50_B5YJH7 Pseudouridine synthase n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YJH7_THEYD Length = 237 Score = 258 bits (660), Expect = 2e-67, Method: Composition-based stats. Identities = 88/234 (37%), Positives = 131/234 (55%), Gaps = 9/234 (3%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPG-DVVKVNGQLIEPREAED 66 RL K +S+ GI SRR A+ I++G V +NG+ A IG + P D +KV+G+L+ + E Sbjct: 4 RLQKILSDYGIASRRHAEELIKEGRVTVNGQIAVIGQKADPEKDYIKVDGKLL--IKPEP 61 Query: 67 LVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSK-RVFPIGRLDKDSQGLIFLTNHGDLVN 124 V A KP +++ D + R I DF+ K R++P+GRLD DS+GL+ LTN G+L Sbjct: 62 KVYYAFYKPRKVITALLDPQGRPTIRDFIKGIKFRIYPVGRLDFDSEGLLLLTNDGELAY 121 Query: 125 KILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKV----KKEAPFVFRIT 180 K++ + EK Y+V VD + E I + G+ I G + V K +A +IT Sbjct: 122 KVMHPSSQIEKTYMVKVDGIVEPETIEKLRKGIKIEGKLAVPVSVHLVKKLKANSWIKIT 181 Query: 181 LVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFK 234 L +G RQIR+M E G+ V +L R I V L + G+ R LT +E+ L + Sbjct: 182 LHEGRKRQIRKMLERVGHPVIRLIRIAIDGVKLGDLKPGQLRPLTKEEIEKLRR 235 >UniRef50_Q31H34 Pseudouridine synthase n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31H34_THICR Length = 261 Score = 258 bits (659), Expect = 2e-67, Method: Composition-based stats. Identities = 102/234 (43%), Positives = 150/234 (64%), Gaps = 2/234 (0%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREA 64 SS+RLNK IS++G+ S+++AD +I Q V +NG+ A++G +V D V ++G+ + + Sbjct: 30 SSMRLNKLISQAGLGSKKQADAWIMQNRVTVNGQVASVGQKVNQHDQVLLDGRPVA--WS 87 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVN 124 +++L+A +KPVG+V T + +N+V + +GRLDK S+GL+ LTN GDL N Sbjct: 88 SEVLLMAYHKPVGVVCTHDLSVANNLVVSTGLMQHFSAMGRLDKASEGLMILTNQGDLTN 147 Query: 125 KILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQG 184 IL+ G HEKEY V VD+P+TE F+ M GV I+G VT+ C+++ FRI L QG Sbjct: 148 HILQPGFAHEKEYWVEVDQPLTEYFLTNMQQGVEIMGQVTRPCEIEATGEHCFRIVLTQG 207 Query: 185 LNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIEN 238 LN+QIRRMC+ GY V +L+R RI V L +P+ R+L D E L +LI Sbjct: 208 LNKQIRRMCKSLGYRVLRLQRVRIAQVWLDDLPVNTLRELNDVEKSGLQRLIPR 261 >UniRef50_B0N6F1 Pseudouridine synthase n=3 Tax=Bacteria RepID=B0N6F1_9FIRM Length = 241 Score = 258 bits (659), Expect = 2e-67, Method: Composition-based stats. Identities = 88/238 (36%), Positives = 133/238 (55%), Gaps = 12/238 (5%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREAED 66 RL K I+ SG SRR+A+ I QG V +NGK T +G +VK GD++ V G+ + E+ Sbjct: 3 RLQKAIAASGYTSRRKAEDLIVQGKVEVNGKVVTELGTKVKQGDLITVEGKPLV---GEN 59 Query: 67 LVLIALNKPVGIVSTTEDG-ERDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTNHGDLVN 124 V KP G V T +D +R I D+ +R++P+GRLD D+ GLI ++N G+ N Sbjct: 60 KVYYVFYKPKGCVCTLDDEFDRPIITDYFTEVKERIYPVGRLDFDTTGLIIMSNDGEFAN 119 Query: 125 KILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK------KEAPFVFR 178 I+ + EK Y V++ IT + + GV + G T CK+K + + + Sbjct: 120 MIMHPRSHLEKIYEVSIKGLITGPTLNKLEKGVYLEGVKTLPCKIKVVDKDTEHKTTMLK 179 Query: 179 ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLI 236 I LV+G NRQ+++M E G+ VK+L R I ++L G+ G +R L E+ DL KL+ Sbjct: 180 IKLVEGKNRQVKKMFESVGHPVKRLHRVSIGGINLKGLTPGRYRILKPQEVKDLKKLV 237 >UniRef50_A6LIA0 Pseudouridine synthase n=23 Tax=Bacteroidales RepID=A6LIA0_PARD8 Length = 495 Score = 257 bits (658), Expect = 2e-67, Method: Composition-based stats. Identities = 78/238 (32%), Positives = 132/238 (55%), Gaps = 10/238 (4%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEP 61 P+ +RLNK++S +G+CSRREAD +I++G V +N T +G ++ DVV N + ++ Sbjct: 256 PNEPIRLNKFLSNAGVCSRREADEFIQKGAVKVNDVVVTELGTKITRQDVVTFNEKPVQI 315 Query: 62 REAEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHS--KRVFPIGRLDKDSQGLIFLTN 118 E V I LNKP V+T++D ER ++D V ++ +R++P+GRLD+++ G++ LTN Sbjct: 316 ---ESKVYIVLNKPKNCVTTSDDPQERLTVMDLVKNACQERIYPVGRLDRNTTGVLLLTN 372 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVT---KKCKVKKEAPF 175 GDL +K+ +K Y V +DK + E + ++ G+ + ++ Sbjct: 373 DGDLASKLTHPSFKKKKIYHVWLDKNVAIEDMEKIANGLELEDGEIHADAISYASEDDKS 432 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF 233 I + G NR +RR+ E GY V KL+R ++ + G+WR L + E+ L Sbjct: 433 QVGIEIHSGRNRIVRRIFESLGYHVTKLDRVYFAGLTKKNLGRGKWRYLNEREVNALR 490 >UniRef50_B9KC52 Pseudouridine synthase n=1 Tax=Thermotoga neapolitana DSM 4359 RepID=B9KC52_THENN Length = 240 Score = 257 bits (658), Expect = 3e-67, Method: Composition-based stats. Identities = 76/231 (32%), Positives = 132/231 (57%), Gaps = 6/231 (2%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEPREAE 65 +RL++Y+S GI +R+E I+ G V +N + ++ DVVKV+G++I+ E Sbjct: 1 MRLDRYLSNRGIGTRKEVRALIKHGRVTVNDRTVLDPAYKLSDKDVVKVDGKVIDLPEK- 59 Query: 66 DLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNK 125 V I KP G V++T D + I++F+ K +FP+GRLDKD++GL+ +TN G+ ++ Sbjct: 60 --VYILFYKPAGYVTSTRDPHSETIMEFLPDIKGIFPVGRLDKDAEGLLLVTNDGEFAHR 117 Query: 126 ILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCK-VKKEAPFVFRITLVQG 184 ++ EKEY+V V+ ITE+ + + GV + K K V+K + +I + +G Sbjct: 118 VISPRWKVEKEYVVKVEGEITEDKLEKLRRGVSLRDGFFAKAKHVEKISNDTVKIVITEG 177 Query: 185 LNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDLFK 234 Q++RM G + L+R RI + L + GE+R L+++E+ +F+ Sbjct: 178 KYHQVKRMMAAVGLKTIHLKRVRIGGLRLPQEMKPGEYRFLSEEEVRQVFE 228 >UniRef50_C7M7R0 Pseudouridine synthase n=4 Tax=Bacteroidetes RepID=C7M7R0_CAPOD Length = 387 Score = 257 bits (657), Expect = 3e-67, Method: Composition-based stats. Identities = 86/238 (36%), Positives = 136/238 (57%), Gaps = 10/238 (4%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKR-ATIGDQVKPGDVVKVNGQLIEPRE 63 + VRLNKYI+++GICSRR AD YI GNV +NG+ T+G +VKP D V+ +G+L+ Sbjct: 152 AEVRLNKYIADAGICSRRNADMYISAGNVTVNGEVMTTLGYRVKPTDEVRFDGKLLS--- 208 Query: 64 AEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHS--KRVFPIGRLDKDSQGLIFLTNHG 120 +E I LNKP G ++TT D R ++D V ++ R+ P+GRLD+ + GL+ LTN G Sbjct: 209 SEKKEYILLNKPKGFITTTNDEKGRKTVMDLVANATNVRILPVGRLDRATTGLLLLTNDG 268 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA---PFVF 177 +L K+ + K Y V +D+ + + + G+ + + + ++ Sbjct: 269 ELTKKLTHPTHGVRKIYHVILDRKLDYKDFMKVQDGLELEDGLIEVDEISYVNDKPKNEI 328 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 I + G NR +RR+ EH GY+V+KL+R ++ +P G WR LT E+I+L + Sbjct: 329 GIKIHSGRNRIVRRIFEHLGYQVEKLDRVVFAGLTKKDLPRGHWRRLTQQEVINLRNM 386 >UniRef50_C3JBA6 Pseudouridine synthase n=2 Tax=Bacteria RepID=C3JBA6_9PORP Length = 459 Score = 257 bits (657), Expect = 4e-67, Method: Composition-based stats. Identities = 82/239 (34%), Positives = 139/239 (58%), Gaps = 10/239 (4%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEP 61 P + +RLNK+++ SG+CSRR AD+ I G+V +NG+ T +G V D + V+G+ + Sbjct: 220 PKTPLRLNKFLASSGVCSRRVADQLIVDGHVSVNGEIVTQLGKHVTREDFISVDGKPVSI 279 Query: 62 REAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHS--KRVFPIGRLDKDSQGLIFLTN 118 E + + LNKP V+T+ D E R +D V ++ +R++P+GRLD+++ GL+ LTN Sbjct: 280 ---EKKIYVLLNKPRNCVTTSSDPEKRLTAIDLVRNACNERIYPVGRLDRNTTGLLLLTN 336 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPF--- 175 GDL K++ + +K Y VT+DKP++ E ++ +++G+ + + Sbjct: 337 DGDLAAKLMHPKYEKKKIYQVTLDKPVSVEHMQQIASGIELEDGEIHADAISYVDENNLA 396 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFK 234 + I + G NR +RR+ +H GY V KL+R ++ +P G WR LT+DE+ +L Sbjct: 397 IVGIEIHSGRNRIVRRIFKHLGYRVYKLDRVYFAGLTKKDLPRGRWRYLTEDEVRNLRH 455 >UniRef50_Q0AX41 Pseudouridine synthase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AX41_SYNWW Length = 239 Score = 256 bits (655), Expect = 5e-67, Method: Composition-based stats. Identities = 86/242 (35%), Positives = 138/242 (57%), Gaps = 10/242 (4%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREAE 65 +RL KY++ESGI SRR+A+R I QG V +N K T + +KPGD V+ G++I E Sbjct: 1 MRLAKYLAESGISSRRQAERLITQGKVKVNDKTITELAFTLKPGDRVEFAGKII---EQT 57 Query: 66 DLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTNHGDLV 123 D + + L+KP G +S+ D + R ++D ++ + RVFP+GRLD D++GL+ L+N G+ Sbjct: 58 DKIYLLLHKPAGYISSLADPQGRPRVIDLLSAVNTRVFPVGRLDYDTEGLLLLSNDGEFS 117 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK----KEAPFVFRI 179 N + K+Y V + + IR + GV + +T +V+ K+ + + Sbjct: 118 NLMTHPRYLIPKKYEAWVQGLVKPDTIRQLEQGVALEDGITAPARVRLLSSKKGQSLLEL 177 Query: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENS 239 + +G RQI+RMC G+ V KL+RT + ++L G+P G++R LT E+ L L S Sbjct: 178 EIHEGKKRQIKRMCLAVGHRVTKLKRTALAFLTLEGVPRGQFRFLTASEVESLIMLARQS 237 Query: 240 SS 241 Sbjct: 238 GK 239 >UniRef50_C0FY58 Pseudouridine synthase n=3 Tax=Clostridiales RepID=C0FY58_9FIRM Length = 261 Score = 256 bits (654), Expect = 8e-67, Method: Composition-based stats. Identities = 71/239 (29%), Positives = 123/239 (51%), Gaps = 12/239 (5%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIG-DQVKP-GDVVKVNGQLIEP 61 + +RL+K+++E G+ +R E + ++ + +NG+ T +V P D + G+ + Sbjct: 22 NELMRLDKFLTEMGLGTRSEVKKILKTKQITVNGEIVTKPETKVAPENDQISYKGEPVTY 81 Query: 62 REAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKR--VFPIGRLDKDSQGLIFLTNH 119 E E KP G V+ TED ++D++ + R +FP+GRLD D++GL+ +TN Sbjct: 82 CEYE---YYLFYKPAGCVTATEDQLHKTVMDYLTDTVRSDLFPVGRLDIDTEGLLLITND 138 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI-LGTVTKKCK---VKKEAPF 175 G L + +L EK Y +D +TE+ + GV I +TK K +K E Sbjct: 139 GALAHDLLSPAKHVEKTYYAVIDGVVTEKDVNSFENGVDIGEEKLTKPGKLRILKSEPES 198 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDELIDLF 233 +T+ +G Q++RM E G +V L+R + + L + GE+R LT++E+ L Sbjct: 199 EIELTITEGRFHQVKRMFEAVGKKVLYLKRISMGPLQLTDDLKPGEYRPLTEEEITALK 257 >UniRef50_D1C7P2 Pseudouridine synthase n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C7P2_SPHTD Length = 337 Score = 255 bits (653), Expect = 9e-67, Method: Composition-based stats. Identities = 97/282 (34%), Positives = 149/282 (52%), Gaps = 12/282 (4%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPG-DVVKVNGQLIEPREAE 65 RL + ++ G+ SRR+A+ I G V ++G+ +G +V P ++V+G+ + P E Sbjct: 3 RLQRVLAAHGVASRRKAEELITAGRVTVDGQVVRELGVRVDPERQEIRVDGKRLRP---E 59 Query: 66 DLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVN 124 I LNKP G ++T D R ++D V +RV P GRLD+ + GL+ LTN GDL+ Sbjct: 60 RRRYIMLNKPPGYITTVSDERGRRTVMDLVQVPERVVPAGRLDRPTAGLLLLTNDGDLLF 119 Query: 125 KILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK----KEAPFVFRIT 180 +I + EKEY V VD E + + GV + G +V+ +EA V RI Sbjct: 120 RITHPRYELEKEYEVLVDGHPPPEVLDQLRRGVTVDGERVVPDQVRPLRIEEAGTVLRIV 179 Query: 181 LVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLI--EN 238 + +G NR +RRM + GY V KL RTRI + + G+PLG WRDLT E++ L + + + Sbjct: 180 IHEGRNRIVRRMMDRVGYPVLKLTRTRIGPIHVRGVPLGAWRDLTPGEVMQLLEAVGLDP 239 Query: 239 SSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRF 280 +S+ + G +R + +G RPA +G R Sbjct: 240 ASAGRPLPEPGRRSDPGERRGEPRRSGPTRRGERPAPSGARP 281 >UniRef50_Q65HX7 Pseudouridine synthase n=5 Tax=Firmicutes RepID=Q65HX7_BACLD Length = 244 Score = 255 bits (651), Expect = 1e-66, Method: Composition-based stats. Identities = 88/243 (36%), Positives = 137/243 (56%), Gaps = 12/243 (4%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEPREAED 66 RL K I+ +GI SRR+A+ I++G V +NGK +G +V D ++VNG + E+E+ Sbjct: 3 RLQKVIAHAGIASRRKAEELIKEGRVTVNGKTVRELGVKVSSSDRIEVNGVQL---ESEE 59 Query: 67 LVLIALNKPVGIVST-TEDGERDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTNHGDLVN 124 V L KP G++S +D R + DF +R++PIGRLD D+ GL+ LTN GD N Sbjct: 60 PVYFLLYKPRGVISAVKDDKGRKVVTDFFTEVEERIYPIGRLDYDTSGLLLLTNDGDFAN 119 Query: 125 KILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKV------KKEAPFVFR 178 K++ + K Y+ + +E ++ + GV + T KV KK+ + + Sbjct: 120 KLMHPKYEINKTYVAKLKGIPLKENLKKLERGVRLEDGKTAPAKVKLLSLDKKKQTSIVQ 179 Query: 179 ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIEN 238 IT+ +G NRQ+RRM E G+EV KL+R ++L+G+ GE R+LT E+ L L E+ Sbjct: 180 ITIHEGRNRQVRRMFEAIGHEVLKLKREEYAFLNLAGLKTGEKRELTPHEVKRLRALAEH 239 Query: 239 SSS 241 + Sbjct: 240 GKA 242 >UniRef50_C9KIR7 Pseudouridine synthase n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KIR7_9FIRM Length = 250 Score = 255 bits (651), Expect = 2e-66, Method: Composition-based stats. Identities = 86/250 (34%), Positives = 141/250 (56%), Gaps = 18/250 (7%) Query: 1 MLPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDV-VKVNGQL 58 M+ + RL K IS++GI SRR A++ I +G V ++G+ +G +V P + V+G+ Sbjct: 1 MMQEE--RLQKIISQAGIASRRAAEKMILEGRVRVDGQVVRELGTKVDPAAHTILVDGKK 58 Query: 59 IEPREAEDLVLIALNKPVGIVSTT-EDGERDNIVDFVNH-SKRVFPIGRLDKDSQGLIFL 116 I E V + LNKP G +ST +D R ++D + +RV+P+GRLD +++GL+ + Sbjct: 59 IAGEEQ--HVYLLLNKPKGYLSTAKDDRGRRTVLDLLPEVRERVYPVGRLDNNTEGLLLI 116 Query: 117 TNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKV----KKE 172 TN G L+N +L + EK Y V +TEE ++ + G+ + +T KV ++E Sbjct: 117 TNDGALMNGLLHPRFEVEKTYHAGVTGKLTEEKLQMLRDGLLLEDGMTAPAKVSLLPERE 176 Query: 173 APFVFR------ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTD 226 R IT+ +G NRQ+RRM G +VK L+R R ++L G+ G+ R LT+ Sbjct: 177 PGERVRGLTRAAITIHEGRNRQVRRMFAAVGCDVKSLKRVRFAGLTLKGVARGQHRALTE 236 Query: 227 DELIDLFKLI 236 +E+ L++L Sbjct: 237 EEVSSLYRLA 246 >UniRef50_A8SYF2 Pseudouridine synthase n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8SYF2_9FIRM Length = 239 Score = 254 bits (650), Expect = 2e-66, Method: Composition-based stats. Identities = 71/242 (29%), Positives = 121/242 (50%), Gaps = 15/242 (6%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGD-QVKPG-DVVKVNGQLIEPREA 64 +RL+K++ E I SR + +YI++G V +NG A D ++ D +K NG+ + Sbjct: 1 MRLDKFLVEMNIGSRSQVKQYIKKGMVSVNGTNAASSDMKINEDTDTIKYNGKQLCY--- 57 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVN--HSKRVFPIGRLDKDSQGLIFLTNHGDL 122 LNKP G VS T+D ++D +N ++K +FP+GRLD D++GL+ +TN G L Sbjct: 58 SKYRYFLLNKPAGCVSATKDNVHQTVIDLLNGENTKDLFPVGRLDLDTEGLLIITNDGRL 117 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI-LGTVTKKCKVKKE------APF 175 + +L + K Y +D + ++ I G+ I T T +K Sbjct: 118 AHHLLSPAHHIAKTYYADIDGYVDDQTISLFKQGIDIGDDTPTLPASLKIIEADRSTGSS 177 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDELIDLFK 234 +T+ +G Q++RM + V L+R + N+ + +P G +R+LT +E+ L Sbjct: 178 RIELTITEGRFHQVKRMFQAVNMSVTFLKRISMGNLHIADDLPTGSYRELTPEEVSALSH 237 Query: 235 LI 236 I Sbjct: 238 TI 239 >UniRef50_C1XV14 Pseudouridine synthase n=2 Tax=Meiothermus RepID=C1XV14_9DEIN Length = 369 Score = 254 bits (649), Expect = 3e-66, Method: Composition-based stats. Identities = 88/281 (31%), Positives = 139/281 (49%), Gaps = 6/281 (2%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAED 66 +RL ++++ +G+ SRR+A+ I +G V +N + A IG V DVV ++G+ + R E Sbjct: 1 MRLQQFLARAGVASRRKAEDLIREGRVTINDQIAGIGSSVSESDVVCLDGERV--RLPEK 58 Query: 67 LVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNK 125 V+IAL+KPVG+ +T D + V + P+GRLDKDS+GL+ LTN GDL K Sbjct: 59 KVVIALHKPVGVTTTKSDPHAERTVYQLVPDVPGLHPVGRLDKDSEGLLLLTNDGDLTLK 118 Query: 126 ILRAGNDHEKEYLVTVD-KPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQG 184 + K Y ++E R + GV + + + + + RI + +G Sbjct: 119 LTHPRYGVRKVYRAWCKHGRVSEADCRRLVEGVALDDGLAQALEAEPTQEG-ARIVMAEG 177 Query: 185 LNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSSSEVK 244 R++RRM GY V +L R ++ + L + GEWR LT +E+ L + + Sbjct: 178 KKREVRRMLGRLGYPVTRLVRLQVGPIKLGKLNPGEWRYLTPEEIGLLQGQKPLKPRKKE 237 Query: 245 PKAKAKPKTAGIKRPVVKMEKTAEKGGR-PASNGKRFTSPG 284 AKAKP +R + K + + A R SPG Sbjct: 238 GWAKAKPAKFAQQREESRAIKPPSRTEQGRAGFTVRTKSPG 278 >UniRef50_D0MIA1 Pseudouridine synthase n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MIA1_RHOM4 Length = 268 Score = 253 bits (647), Expect = 5e-66, Method: Composition-based stats. Identities = 82/247 (33%), Positives = 138/247 (55%), Gaps = 10/247 (4%) Query: 5 SSVRLNKYISESGIC-SRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPRE 63 S +RLN+Y++ +G+C SRR+AD I G V +NG+ A +G +V P D+V+VNG + P+ Sbjct: 8 SLIRLNRYLARAGVCPSRRKADELIASGQVRVNGQVAQLGMRVGPDDIVEVNGVRVVPQT 67 Query: 64 AEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHSKR----VFPIGRLDKDSQGLIFLTN 118 + I +NKP ++T +D R ++D +N +FP+GRLD+++ G++ LTN Sbjct: 68 QA--LYILMNKPHDTITTCDDERGRRTVLDLINLPPEQKNGLFPVGRLDRNTTGVLLLTN 125 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKE--APFV 176 G+L N+++ EK Y+ +P+ E + GV + + +V P Sbjct: 126 DGELANRLMHPRYRVEKIYVARTARPVKPEEAEQLRRGVQLEDGPARAVQVAVNPADPHE 185 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLI 236 + + +G NRQ+RRM E G+EV +L+RT ++ G+ G+WR LTD E+ L++L Sbjct: 186 IALMIYEGRNRQVRRMLEAIGHEVVQLKRTHYAGLTTKGVRPGKWRRLTDAEVRRLYRLA 245 Query: 237 ENSSSEV 243 + Sbjct: 246 GLKPPKT 252 >UniRef50_P0AA45 Ribosomal small subunit pseudouridine synthase A n=156 Tax=Gammaproteobacteria RepID=RSUA_ECO57 Length = 231 Score = 253 bits (647), Expect = 5e-66, Method: Composition-based stats. Identities = 64/231 (27%), Positives = 116/231 (50%), Gaps = 8/231 (3%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREAE 65 +RL+K+I++ SR A R I V ++G+ ++ P V +G + + Sbjct: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 Query: 66 DLVLIALNKPVGIVSTTEDGERDNIVDFVNHSK--RVFPIGRLDKDSQGLIFLTNHGDLV 123 LNKP G V +T+D + ++ F++ ++ GRLD D+ GL+ +T+ G Sbjct: 61 R--YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGT--VTKKCKVKKEAPFVFRITL 181 ++I + EK YLVT++ P+ ++ + GV + +TK ++ P R+T+ Sbjct: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTI 178 Query: 182 VQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELID 231 +G Q++RM G V +L R RI ++L + GE+R LT++E+ Sbjct: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIAS 229 >UniRef50_D0U645 Pseudouridine synthase n=1 Tax=uncultured actinobacterium RepID=D0U645_9ACTN Length = 237 Score = 253 bits (646), Expect = 6e-66, Method: Composition-based stats. Identities = 86/237 (36%), Positives = 132/237 (55%), Gaps = 6/237 (2%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPG-DVVKVNGQLIEPR 62 + +RLNK I+++GI SRR AD IE G V +NG +G + P D V V+G+ I Sbjct: 2 AQMRLNKIIADAGITSRRGADELIEDGRVAVNGIIVREMGSKFDPEMDKVMVDGETITRT 61 Query: 63 EAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVN-HSKRVFPIGRLDKDSQGLIFLTNHG 120 + +AL+KP G++ST D E R ++ DF++ +R+F +GRLDKDS+GLI LTN G Sbjct: 62 LTKS--YLALHKPKGVLSTMFDPEGRPSLDDFIDLRKERLFHVGRLDKDSEGLILLTNDG 119 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRIT 180 DL + EK Y++ D + + + GV + + + K+ +P ++ Sbjct: 120 DLTFRATHPSFGLEKTYIIEFDGILPTGVDKVLLKGVELEDGMGRVLTFKQLSPKWIEVS 179 Query: 181 LVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIE 237 + +G IRR+ E G V +L RT+ +SL P G WRDL D EL++L K ++ Sbjct: 180 IHEGRYHIIRRLMEAVGVNVLRLIRTKFGPISLGDTPEGRWRDLNDGELMNLRKALD 236 >UniRef50_C7H5G4 Pseudouridine synthase n=8 Tax=Clostridiales RepID=C7H5G4_9FIRM Length = 294 Score = 253 bits (646), Expect = 7e-66, Method: Composition-based stats. Identities = 93/282 (32%), Positives = 144/282 (51%), Gaps = 14/282 (4%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPG-DVVKVNGQLIEPRE 63 + R+ K ++E G+CSRR A++ I +G V +NG +GD++ P DV+ V+ + I ++ Sbjct: 19 AEERIQKIMAEQGLCSRRAAEQIIAEGRVKVNGHPVKVGDKMDPNRDVLHVDDERIYIQK 78 Query: 64 AEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTNHGD 121 + L +AL KP G V+T D R +++ V+ R++P+GRLDKDS+GL+ +TN G Sbjct: 79 NQQLYYLALYKPRGYVTTASDELGRKTVMELVSDIPARLYPVGRLDKDSEGLLLMTNDGA 138 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPIL-GTVTKKCKV----KKEAPFV 176 + K Y VTV E I MS+GV + GT T C + + V Sbjct: 139 FAQAVTHPSGGISKLYRVTVQPRADESQILKMSSGVVLDDGTKTMPCAINVVTDEPGRTV 198 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLI 236 +TL +G NR+IRRMCE G EV +L+R V L + G +R+LT E+ L Sbjct: 199 MEMTLKEGKNREIRRMCEAVGLEVVRLKRNAEGVVKLGMLKPGTYRELTKAEVSGLR--- 255 Query: 237 ENSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGK 278 ++ K +A+ + K + + G PA K Sbjct: 256 ---AAAAKGRAQTRSAALQSKAAARRPKGPVGSGNAPAKRRK 294 >UniRef50_P35159 Ribosomal large subunit pseudouridine synthase B n=200 Tax=Bacteria RepID=RLUB_BACSU Length = 244 Score = 253 bits (646), Expect = 7e-66, Method: Composition-based stats. Identities = 84/243 (34%), Positives = 137/243 (56%), Gaps = 12/243 (4%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREAED 66 RL K I+ +G+ SRR+A+ I++G V +NGK T +G +V D ++VNG + E E+ Sbjct: 3 RLQKVIAHAGVASRRKAEELIKEGKVKVNGKVVTELGVKVTGSDQIEVNGLKV---EREE 59 Query: 67 LVLIALNKPVGIVSTT-EDGERDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTNHGDLVN 124 V L KP G++S +D R + DF + +R++PIGRLD D+ GL+ LTN G+ N Sbjct: 60 PVYFLLYKPRGVISAAQDDKGRKVVTDFFKNIPQRIYPIGRLDYDTSGLLLLTNDGEFAN 119 Query: 125 KILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKV------KKEAPFVFR 178 K++ + +K Y+ V +E +R + G+ + T K KK+ + + Sbjct: 120 KLMHPKYEIDKTYVAKVKGIPPKELLRKLERGIRLEEGKTAPAKAKLLSLDKKKQTSIIQ 179 Query: 179 ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIEN 238 +T+ +G NRQ+RRM E G+EV KL+R ++L G+ G+ R+LT E+ L L ++ Sbjct: 180 LTIHEGRNRQVRRMFEAIGHEVIKLKREEYAFLNLRGLHTGDARELTPHEVKRLRALADH 239 Query: 239 SSS 241 + Sbjct: 240 GKN 242 >UniRef50_C8NZC3 Pseudouridine synthase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZC3_ERYRH Length = 246 Score = 253 bits (646), Expect = 7e-66, Method: Composition-based stats. Identities = 88/237 (37%), Positives = 133/237 (56%), Gaps = 10/237 (4%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNG-KRATIGDQVKPGDVVKVNGQLIEPRE 63 +++RL K+I+ SG CSRR+A+ I +G V +NG K G +V D V VNG LI E Sbjct: 5 NNIRLQKFIAMSGYCSRRKAEVLINEGKVKVNGIKVTEQGLKVSTEDRVMVNGILINVEE 64 Query: 64 AEDLVLIALNKPVGIVST-TEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDL 122 + V LNKP GIVS+ +D +R+++VD V + RVFP+GRLD+++ G + LTN GD Sbjct: 65 KK--VYYILNKPRGIVSSANDDKDRESVVDLVPNDIRVFPVGRLDRETTGALILTNDGDF 122 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKK------EAPFV 176 + D K Y V+V ++ E + G+ I G K ++ + + Sbjct: 123 AYYMTHPKFDLSKIYRVSVRGRLSYEVTNSLKEGITIEGVEYKGVEISRVKYDAAKDKTQ 182 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF 233 F ITL +G NRQIR++ HFG V KL R +I + + + +G++R+L E+ L Sbjct: 183 FSITLHEGKNRQIRKIFAHFGLPVLKLHRYQIGYLDIDELKIGQYRELKPFEVKKLL 239 >UniRef50_A2RP35 Pseudouridine synthase n=172 Tax=Firmicutes RepID=A2RP35_LACLM Length = 328 Score = 252 bits (645), Expect = 8e-66, Method: Composition-based stats. Identities = 75/251 (29%), Positives = 131/251 (52%), Gaps = 20/251 (7%) Query: 1 MLPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIG-DQVKPG-DVVKVNGQL 58 + + +RL+K+++ESG+ SR E +++G V + G+ G QV V +GQ+ Sbjct: 81 LCYNKGMRLDKFLAESGLGSRSEVKVLLKKGRVTVAGEIQRDGRFQVDKNSRQVAFDGQI 140 Query: 59 IEPREAEDLVLIALNKPVGIVSTTEDGERDNIVDFV---NHSKRVFPIGRLDKDSQGLIF 115 ++ +E LNKP G+VS T+D +V + + K +FP+GRLDK+++GL+ Sbjct: 141 LDYQE---YYYYLLNKPQGVVSATKDNVFKTVVQLLSEKDFRKDIFPVGRLDKNTEGLLI 197 Query: 116 LTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI-LGTVTKKCKVKKEAP 174 LTN G L + + + EKEY +D +T+E I + G+ + G + ++ E Sbjct: 198 LTNDGALGHDLTQPKKHVEKEYFARIDGKVTDEIINKFAEGLTLKNGEKARPGELFVEKT 257 Query: 175 FV----------FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRD 223 + R+ + +G Q++RM E V L+R R+ N++L + LG +R Sbjct: 258 YKGDSQSGWVSEIRVIIHEGKFHQVKRMFEAVEMYVLYLKRIRMGNLALDSDLALGAYRP 317 Query: 224 LTDDELIDLFK 234 LT +E+ +L K Sbjct: 318 LTIEEIENLKK 328 >UniRef50_C6VXU0 Pseudouridine synthase n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VXU0_DYAFD Length = 555 Score = 252 bits (644), Expect = 1e-65, Method: Composition-based stats. Identities = 96/238 (40%), Positives = 143/238 (60%), Gaps = 9/238 (3%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPRE 63 +RLN+YI+ +GICSRREAD I G + +NGK T +G +V+P DVVK + + P Sbjct: 321 DEIRLNRYIANAGICSRREADDLISSGQISVNGKIVTEMGYKVRPTDVVKYGKKALNP-- 378 Query: 64 AEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH--SKRVFPIGRLDKDSQGLIFLTNHG 120 E +V I +NKP ++TT+D E R ++D + S+RV+P+GRLD+++ GL+ LTN G Sbjct: 379 -EKMVYILINKPKDYITTTDDPEERKTVLDIIAGACSERVYPVGRLDRNTTGLLLLTNDG 437 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAP--FVFR 178 +L K+ + +K Y +DKPIT E + AGV + + +V P V Sbjct: 438 ELAEKLTHPSSGIKKIYQAELDKPITTEDFEQLKAGVELEDGFIRPDEVGLVTPDAQVVG 497 Query: 179 ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLI 236 + + G NR +RRM EH GYEV+KL+RT ++ +P G+WR LT+ E+I L L+ Sbjct: 498 LEIHSGRNRIVRRMFEHLGYEVQKLDRTVFAGLNKKDLPRGKWRFLTEKEVIKLKFLL 555 >UniRef50_A3CPQ5 Pseudouridine synthase n=3 Tax=Firmicutes RepID=A3CPQ5_STRSV Length = 242 Score = 252 bits (644), Expect = 1e-65, Method: Composition-based stats. Identities = 85/245 (34%), Positives = 143/245 (58%), Gaps = 12/245 (4%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEPREAE 65 +R+NKYI+ +GI SRR+A+ I QG V +NG+ + VK GD V+V GQ I E Sbjct: 1 MRINKYIAHAGIASRRKAEELIRQGKVSINGQVVRELATNVKSGDRVEVEGQPI---YNE 57 Query: 66 DLVLIALNKPVGIVST-TEDGERDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTNHGDLV 123 + V LNKP G++S+ ++D R +V+ + +R++P+GRLD D+ G++ LTN GD Sbjct: 58 EKVYYLLNKPRGVISSVSDDKGRKTVVELLPQVKERIYPVGRLDWDTSGILILTNDGDFT 117 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKC--KVKKEAP----FVF 177 ++++ N+ +K Y+ V +E +R ++ G+ I G TK ++ K P V Sbjct: 118 DEMIHPRNEIDKVYVARVKGLANKEVLRPLTRGIEIEGRKTKPAVYEIIKVDPAKNRSVV 177 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIE 237 ++T+ +G N Q+++M + G +V KL RTR ++ L+G+ GE+R L+ E+ L L Sbjct: 178 QLTIHEGRNHQVKKMFQAVGLQVDKLSRTRFGHLDLTGLKPGEYRKLSKKEVSQLHTLAV 237 Query: 238 NSSSE 242 + + Sbjct: 238 TKTKK 242 >UniRef50_A9NFY3 Pseudouridine synthase n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NFY3_ACHLI Length = 236 Score = 252 bits (644), Expect = 1e-65, Method: Composition-based stats. Identities = 114/232 (49%), Positives = 151/232 (65%), Gaps = 8/232 (3%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAED 66 +RLN YIS++G+ SRR AD IE G + +NG A +G Q+ DVV ++ +IEP E+ Sbjct: 1 MRLNLYISKTGVASRRGADSLIEHGRIKVNGVTAVLGMQITKNDVVTLDNNIIEPL--EE 58 Query: 67 LVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNKI 126 I LNKPVGIVSTT N++ F+N +++FP+GRLDKDS GLI LTN G +VNKI Sbjct: 59 KFYILLNKPVGIVSTTNTAISGNMITFMNFKEKIFPVGRLDKDSHGLILLTNDGSIVNKI 118 Query: 127 LRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTV------TKKCKVKKEAPFVFRIT 180 LR N H+KEY VT++KP + FI M++GV I V T +K F +T Sbjct: 119 LRVENGHDKEYHVTLNKPYDDYFIETMTSGVEIYNPVAHEKQMTMPSILKPLDERTFSLT 178 Query: 181 LVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDL 232 + QGLNRQIRRM + GY V+ LER RIM+++L +P+G WR LT DEL +L Sbjct: 179 IRQGLNRQIRRMADSLGYRVESLERVRIMHLTLGDLPVGYWRYLTSDELKEL 230 >UniRef50_C6Y027 Pseudouridine synthase n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6Y027_PEDHD Length = 472 Score = 252 bits (643), Expect = 1e-65, Method: Composition-based stats. Identities = 86/242 (35%), Positives = 139/242 (57%), Gaps = 11/242 (4%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKP-GDVVKVNGQLIEP 61 D +RLN+YIS SGICSRR+AD IE G V +NG+ +G ++ P D V+ NG+L++ Sbjct: 234 DGLIRLNRYISNSGICSRRKADELIEAGVVSVNGEVVSELGHKIDPVKDQVRYNGELLK- 292 Query: 62 REAEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHS--KRVFPIGRLDKDSQGLIFLTN 118 E + + LNKP ++TT+D ER ++ V + +R++P+GRLD+++ GL+ +TN Sbjct: 293 --REKKIYVLLNKPKDYITTTDDPQERRTVMQLVEKASRERIYPVGRLDRNTTGLLLMTN 350 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKK---EAPF 175 GDL +K+ N K Y V + + +++ + + G+ + + K V + Sbjct: 351 DGDLADKLSHPKNGITKIYHVELSRSLSQGDLNKIQFGLELEDGIIKPDSVSYVTGGSKR 410 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 I + G NR +RR+ EH GY+V KL+R N++ +P G WR L + ELI + L Sbjct: 411 EVGIQIHSGKNRIVRRIFEHLGYDVVKLDRVVYGNLTKKDLPRGRWRYLEEHELIQIKHL 470 Query: 236 IE 237 I+ Sbjct: 471 IK 472 >UniRef50_C7GZ55 Pseudouridine synthase n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZ55_9FIRM Length = 250 Score = 252 bits (643), Expect = 1e-65, Method: Composition-based stats. Identities = 90/252 (35%), Positives = 133/252 (52%), Gaps = 25/252 (9%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEPREAE 65 +R+NKYI++ GICSRR+AD I++G V + G G V V+ ++G+ IE + + Sbjct: 1 MRINKYIAKCGICSRRKADELIKEGRVTVGGIPLLECGVNVDEDAVIAIDGRPIEIQ--K 58 Query: 66 DLVLIALNKPVGIVSTTEDG-ERDNIVDFV-NHSKRVFPIGRLDKDSQGLIFLTNHGDLV 123 V IA+NKP G V T D R + D + + +R+F IGRLDKDS+GLI LTN GDL Sbjct: 59 KTVYIAMNKPCGYVCTVSDELGRRTVYDLLTDIDERLFTIGRLDKDSEGLILLTNDGDLA 118 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTV----------------TKKC 167 K+L EK Y V V I+ +S G+ I + TK Sbjct: 119 QKLLSPKRKIEKNYEVVVRGVPGANDIKKLSGGITIDVEISQTKQNKPVKSIVKYHTKPA 178 Query: 168 KV----KKEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRD 223 K+ +K+ + + +G RQIR+M + G+EV KL+R + + L + GE+R Sbjct: 179 KIFEIGQKQGDMKLSMIIKEGKKRQIRKMFDVIGHEVIKLKRVKFAGIELGDLRPGEFRH 238 Query: 224 LTDDELIDLFKL 235 L++DE+ L L Sbjct: 239 LSEDEVRSLCSL 250 >UniRef50_D2QMI8 RNA-binding S4 domain protein n=16 Tax=Bacteroidetes RepID=D2QMI8_9SPHI Length = 638 Score = 252 bits (643), Expect = 1e-65, Method: Composition-based stats. Identities = 91/236 (38%), Positives = 140/236 (59%), Gaps = 9/236 (3%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPR 62 D + RLN++I+ SG+CSRREAD I G++ +NGK T +G +VK GD VK +++ P Sbjct: 402 DGTTRLNRFIANSGVCSRREADELIAHGDISVNGKIVTEMGYKVKEGDTVKYGTKVLNP- 460 Query: 63 EAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHS--KRVFPIGRLDKDSQGLIFLTNH 119 E V + LNKP ++TTED E R +++ V + R++P+GRLD+++ GL+ +TN Sbjct: 461 --ERFVYVLLNKPKDYITTTEDPEERKTVMELVADAGKFRMYPVGRLDRNTTGLLLITND 518 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAP--FVF 177 G+L +K+ N+ K Y V +DKPIT+E + G+ + K + P +V Sbjct: 519 GELADKLTHPSNNIRKIYQVELDKPITDEHFEAIKKGIELEDGPIKPDAISIVTPDAYVV 578 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF 233 I + G NR +RR+ E FGYEV KL+RT ++ +P G+WR L E++ L Sbjct: 579 GIEIHSGRNRIVRRIFESFGYEVTKLDRTTYAGLTKKELPRGKWRFLDPKEVVKLK 634 >UniRef50_C2D7I2 Pseudouridine synthase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D7I2_9ACTN Length = 285 Score = 252 bits (643), Expect = 1e-65, Method: Composition-based stats. Identities = 71/264 (26%), Positives = 132/264 (50%), Gaps = 31/264 (11%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPG-DVVKVNGQLIEPRE 63 ++RL ++++ +G+ SRR +++ I G V +NGK+ +G +V P D V V+G+ E Sbjct: 24 TMRLQRFLARAGVASRRGSEKLISAGRVCVNGKQVRVLGTKVMPQYDHVTVDGK--EYVL 81 Query: 64 AEDLVLIALNKPVGIVSTTEDGER-DNIVDFVN--HSKRVFPIGRLDKDSQGLIFLTNHG 120 D V + LNKP +++T D + V +FP+GRLD D+ G++ T +G Sbjct: 82 GNDHVYLLLNKPSQVLTTMSDPFGFPCVASLVPCDDYPGLFPVGRLDSDTTGVLLFTTNG 141 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKE-------- 172 ++ N++L + K Y+ ++ +T ++ +S G+ + +T C ++ Sbjct: 142 NMGNRLLHPSHHVWKTYVALIEGKLTSSQMQKLSQGIMLEDGMTSPCFIRTITQDEPCTH 201 Query: 173 ---------------APFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGI 216 A + + + +G N Q++RM + G+ V KL R + + L + I Sbjct: 202 LDKNHSLFDDMRLNAASSLCELKIHEGRNHQVKRMLQEIGHPVIKLHRFQFGPLCLNAQI 261 Query: 217 PLGEWRDLTDDELIDLFKLIENSS 240 PLG WR T E+ DL + E+++ Sbjct: 262 PLGSWRMCTQQEIHDLETVCEDNT 285 >UniRef50_UPI0001BCEF2E pseudouridine synthase n=1 Tax=Selenomonas noxia ATCC 43541 RepID=UPI0001BCEF2E Length = 296 Score = 252 bits (643), Expect = 1e-65, Method: Composition-based stats. Identities = 83/297 (27%), Positives = 142/297 (47%), Gaps = 17/297 (5%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKP-GDVVKVNGQLIEPRE 63 RL K +S +G+ SRR A+ I G V ++G T +G + P + V+ + I Sbjct: 2 EERLQKILSNAGVASRRAAEDLIRAGRVAVDGVAVTELGRKFDPANHTITVDSKPIHSD- 60 Query: 64 AEDLVLIALNKPVGIVST-TEDGERDNIVDFVNHSK-RVFPIGRLDKDSQGLIFLTNHGD 121 E I LNKP G +ST +D R ++D + R++P+GRLD D++G++ +TN G Sbjct: 61 -EKRFYILLNKPRGYLSTARDDRGRKTVLDLLPDFPARLYPVGRLDADTEGVLLITNDGA 119 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK----KEAPFVF 177 + +L + +K Y V P+TE + + G+ + +T K++ + V Sbjct: 120 ITQGLLHPRFEIDKVYHAEVAGPVTEGGLTRLRRGILLEDGMTASAKLRILRADKGYTVV 179 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIE 237 + +G NRQ+RRM G V L R R ++L G+ G +R LT DE+ +L + Sbjct: 180 ETIIHEGRNRQVRRMFAAIGCRVCALRRVRFAMLTLRGLSCGSFRHLTRDEIHELRIIAG 239 Query: 238 NSSSEVKPKAKAKP-------KTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKK 287 SSE + +P ++ G++R + A + +GKR +++ Sbjct: 240 VMSSEEDCRRGCRPSGHDGSGRSRGMRRARPAPREDAACRPQDDDHGKRPLQRHKRR 296 >UniRef50_Q12AB3 Pseudouridine synthase n=8 Tax=Proteobacteria RepID=Q12AB3_POLSJ Length = 544 Score = 252 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 79/290 (27%), Positives = 147/290 (50%), Gaps = 11/290 (3%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPR-E 63 + +L+K ++++G+ SR E ++ I +G + +N + A IG +++ GD VKVNG+ I R + Sbjct: 95 ETPKLHKVLAQAGLGSRLEMEQLILEGRISVNAEPAHIGQRIQFGDTVKVNGKPIRVRID 154 Query: 64 AEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH--SKRVFPIGRLDKDSQGLIFLTNHG 120 +IA +KP G V T +D + R + + + +GRLD +++GL+ LT+ G Sbjct: 155 PPPPRVIAYHKPSGEVVTHDDPQNRPTVFRRLPKLFQGKWQSVGRLDLNTEGLLLLTSSG 214 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK----KEAPFV 176 +L NK++ E+EY V V ++ E + + GV + V + ++ + A Sbjct: 215 ELANKLMHPRFGLEREYAVRVLGALSNEEKKRLLEGVTLDDGVAQFSSIEAGGGEGANCW 274 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDLFKL 235 +R+T+ +G NR++RRM E G+ V +L R R + L G+ G + +L + ++ L Sbjct: 275 YRVTISEGRNREVRRMFEAVGHAVSRLIRIRYGAMLLPRGLKRGAFVELDERDIWALTNA 334 Query: 236 IENSSSEVKPKAKAK--PKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSP 283 + S S P+ K G + + + + R + R +P Sbjct: 335 VTRSESRADPRGAPKHPGHVRGDEGGEFRPGRGPRRNERSRGDRGRLPAP 384 >UniRef50_B4U4Q4 Pseudouridine synthase n=15 Tax=Lactobacillales RepID=B4U4Q4_STREM Length = 266 Score = 252 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 83/239 (34%), Positives = 141/239 (58%), Gaps = 12/239 (5%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREAE 65 +R+NKYI+ +G+ SRR+A+ I++G V LNG+ T + VK GD+V++ G I E Sbjct: 27 MRINKYIAHAGVASRRKAEELIKRGLVTLNGQVVTDLATTVKSGDLVEIEGSPI---YNE 83 Query: 66 DLVLIALNKPVGIVST-TEDGERDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTNHGDLV 123 + V LNKP G++S+ ++D R ++D + +R++P+GRLD D+ GL+ LTN GD Sbjct: 84 EKVYYLLNKPRGVISSVSDDKGRQTVIDLLPQVKERIYPVGRLDWDTSGLLILTNDGDFT 143 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK------KEAPFVF 177 +K++ N+ +K YL V +T+E +R ++ GV I G TK + + + + Sbjct: 144 DKMIHPRNEIDKVYLARVKGVVTKESLRPLTRGVVIDGKKTKPARYRIIRVEPDKNRSIV 203 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLI 236 +T+ +G + Q+++M E G+ V KL RT+ ++ + G+ GE R L+ E+ L L Sbjct: 204 ELTIHEGRHHQVKKMFEAVGHLVDKLSRTQFGSLDVRGLKPGEARRLSKKEVSQLHHLA 262 >UniRef50_O67444 Uncharacterized RNA pseudouridine synthase aq_1464 n=4 Tax=Bacteria RepID=Y1464_AQUAE Length = 249 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 78/250 (31%), Positives = 136/250 (54%), Gaps = 12/250 (4%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPG-DVVKVNGQLIEPRE 63 VR+NK++SE+G+ SRR+A++ I +G V +NG+ ++G +V P D+V+V+G+ ++P Sbjct: 3 EVRINKFLSEAGVASRRKAEKLILEGRVKVNGEVVRSLGVKVNPEVDIVEVDGKPVKP-- 60 Query: 64 AEDLVLIALNKPVGIVST--TEDGERDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTNHG 120 + I LNKP ++ R I + + +RVFP+GRLD +++GL+ LTN G Sbjct: 61 -QRKRYIILNKPCCYLTQLGRSPDGRKTIEELIKDIPERVFPVGRLDYNTEGLLILTNDG 119 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK----KEAPFV 176 +L N+IL K YL V+ + ++ ++ M G+ + K ++ + + Sbjct: 120 ELANRILHPRYKLPKVYLALVEGKVDQKTLKRMKQGIELEDGFAKPDNIRIVRYEGKNTL 179 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLI 236 IT +G ++R FG++VK+L+R I + L + G+WR+L EL LFK + Sbjct: 180 LEITFHEGRKHLVKRFLGAFGHKVKRLKRIAIGPIKLGKLSPGKWRELNQGELAQLFKAV 239 Query: 237 ENSSSEVKPK 246 K + Sbjct: 240 GLKYVPRKRR 249 >UniRef50_B4D966 Pseudouridine synthase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D966_9BACT Length = 237 Score = 251 bits (641), Expect = 2e-65, Method: Composition-based stats. Identities = 88/240 (36%), Positives = 130/240 (54%), Gaps = 6/240 (2%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREAE 65 +RLN++++ +G+ SRR + I G V +NG+ T + QV P D VKV +L+ E Sbjct: 1 MRLNRFLASAGLGSRRGVEELITSGQVRINGQVVTDLSTQVGPTDAVKVGSRLLR---TE 57 Query: 66 DLVLIALNKPVGIVSTTEDG-ERDNIVDFVN-HSKRVFPIGRLDKDSQGLIFLTNHGDLV 123 + + LNKP G V T D +R I D + + RV+ +GRLDKDS+GL+ +TN GDL Sbjct: 58 QKITVLLNKPAGYVCTASDERDRKTIFDLLPANWPRVYHVGRLDKDSEGLLLVTNDGDLS 117 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQ 183 + EKEY V +DKP + + G I+G K +V+ P +TL Q Sbjct: 118 LALTHPRYKIEKEYEVLLDKPFNPQDREKLLKGFHIIGGRAKAERVEILNPTHLSLTLTQ 177 Query: 184 GLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSSSEV 243 G+ RQIR M GYEV++L R R+ + + + GEWR LT E+ L + S+ + Sbjct: 178 GIKRQIRLMLYDLGYEVERLARIRLGPLKIGEMRPGEWRLLTSKEIAALKGPAQPSAPKA 237 >UniRef50_C7NDY8 Pseudouridine synthase n=5 Tax=Fusobacteriaceae RepID=C7NDY8_LEPBD Length = 228 Score = 250 bits (640), Expect = 3e-65, Method: Composition-based stats. Identities = 87/230 (37%), Positives = 131/230 (56%), Gaps = 3/230 (1%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAED 66 +RLNK+I+E+G CSRR+AD I +G V +N A IG VKP DVV+++G+ ++ Sbjct: 1 MRLNKFIAETGFCSRRKADELINEGRVTVNKHEAIIGMDVKPEDVVRIDGERVKL--NTR 58 Query: 67 LVLIALNKPVGIVSTTEDG-ERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNK 125 LNKP ++ + ED R VDF+ R+F GRLD ++GLI ++N G++ N Sbjct: 59 YEYYILNKPKRVLCSNEDKFGRRLAVDFIKSRARLFTYGRLDFMTEGLIIISNDGEVYNH 118 Query: 126 ILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQGL 185 ++ K Y+ V + I ++ I + GV I G T KVKK RI + +G Sbjct: 119 VMHPRKKLYKSYIAKVSREIEDKDIEALQHGVVIDGKRTAPAKVKKIDKKELRIAIFEGR 178 Query: 186 NRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 NRQIR+M E GY V L+R ++ ++L + +GE+R L +DE+ L L Sbjct: 179 NRQIRKMLETLGYNVNSLKRIKVGELTLGNLQVGEYRALNEDEIKYLKSL 228 >UniRef50_Q7UUP0 Pseudouridine synthase n=1 Tax=Rhodopirellula baltica RepID=Q7UUP0_RHOBA Length = 395 Score = 250 bits (640), Expect = 3e-65, Method: Composition-based stats. Identities = 99/283 (34%), Positives = 149/283 (52%), Gaps = 14/283 (4%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEPREAE 65 R+N+ ++ +G SRR+ + I +G V ++G+ T +G V P V+V+G + P + Sbjct: 26 RINQLLASAGFGSRRQCEELIREGRVDVDGETITELGTTVDPDLQKVRVDGNYLRP---Q 82 Query: 66 DLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVN 124 LV +NKPVGIV+T D R ++D V ++RVFP+GRLD S+GLI LTN GDL Sbjct: 83 KLVYYVVNKPVGIVTTNRDPRGRPRVIDLVPPTERVFPVGRLDISSEGLILLTNDGDLAQ 142 Query: 125 KILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK----KEAPFVFRIT 180 K+ +K Y V V + E ++ M G+ I + + K + I Sbjct: 143 KLAHPKFGIQKVYRVVVAGEVRGETMKKMREGIYIAEGLVQVDGAKIIKARTKATEMEIR 202 Query: 181 LVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSS 240 L +G NR+IRR+ FG++V++L R I + L +P G +R LT DE+ L + I+ + Sbjct: 203 LKEGKNREIRRILARFGHKVQQLRRVAIGPLKLGDVPRGAYRKLTRDEVDKLRRSIDAAE 262 Query: 241 SEVKPKAKAKP--KTAGIKRPVVKMEKTAEK--GGRPASNGKR 279 K A+P K + +RP A K GGRPA G R Sbjct: 263 KAAKTAPPARPASKQSIKRRPGGASRNVAAKGTGGRPAFKGGR 305 >UniRef50_UPI00016C3D27 ribosomal large subunit pseudouridine synthase B n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3D27 Length = 271 Score = 250 bits (639), Expect = 4e-65, Method: Composition-based stats. Identities = 87/272 (31%), Positives = 138/272 (50%), Gaps = 12/272 (4%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDV-VKVNGQLIEPREAE 65 RLNKY++ +G+ SRR D+ I G V +NG + T +G ++ P + V+ Q + AE Sbjct: 3 RLNKYLAHAGVGSRRHCDKLISAGRVKVNGVKVTELGLKIDPSAHQIAVDDQPVR---AE 59 Query: 66 DLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHSK-RVFPIGRLDKDSQGLIFLTNHGDLV 123 LV A+NKPVG + T D R VD + H + RV+ +GRLD+ S GL+ +TN GDL Sbjct: 60 KLVYWAVNKPVGHLCTNHDPAGRPRAVDLLPHVEQRVYTVGRLDEGSDGLLLMTNDGDLA 119 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKK----EAPFVFRI 179 + K Y V V T++ ++ + GV + + K+ R+ Sbjct: 120 QGLTHPRYGVPKMYFVLVAGRPTDDDLQKLMDGVWLSDGKVRAKSAKRIKAQGNGTWVRV 179 Query: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENS 239 L +G NR+IRRM FG++V +L+R I V L +P G+ R ++D+EL L + + Sbjct: 180 VLTEGKNREIRRMLAKFGHKVMRLKRVAIGPVKLDKLPKGKARRISDEELKALKAFVTRA 239 Query: 240 SSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGG 271 ++ A+ K G K ++ + G Sbjct: 240 RQKI-TAARLKAADGGRKTSQDAPKRPRKTDG 270 >UniRef50_B1XJP9 Pseudouridine synthase n=3 Tax=Chroococcales RepID=B1XJP9_SYNP2 Length = 259 Score = 250 bits (638), Expect = 5e-65, Method: Composition-based stats. Identities = 78/238 (32%), Positives = 112/238 (47%), Gaps = 10/238 (4%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKP-GDVVKVNGQLIEPREA 64 + R+ K ++ GI SRR A++ I G V LNGK +GDQ P GD + V+G+ ++ E Sbjct: 2 AERVQKILARWGIASRRGAEKLILAGRVTLNGKPVQLGDQADPEGDRLCVDGKPLKATER 61 Query: 65 EDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHSKR----VFPIGRLDKDSQGLIFLTNH 119 ++KP G+VST D R ++D + R + PIGRLD S G + LTN Sbjct: 62 PRHYYYLIHKPKGVVSTCADPKGRSTVLDLLPPPLRQGKGIHPIGRLDAQSTGALLLTND 121 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKK----CKVKKEAPF 175 G+ + K Y V + + E + GV + T K + Sbjct: 122 GNFTLALTHPRYHIPKTYRVWLKGKVPEHVLDQWRQGVMLGDRRTLPTQIHLKTITQDKT 181 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF 233 I L +G NRQIRR+ E G+ V KL R I N+ L + G+ R LT E+ L Sbjct: 182 CIDIMLTEGRNRQIRRVAEQLGFPVVKLHRLAIGNLHLGDLQRGQARPLTKAEIKQLR 239 >UniRef50_C0QWY7 Pseudouridine synthase n=2 Tax=Brachyspira RepID=C0QWY7_BRAHW Length = 229 Score = 249 bits (637), Expect = 6e-65, Method: Composition-based stats. Identities = 87/230 (37%), Positives = 127/230 (55%), Gaps = 6/230 (2%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREAE 65 +RLNKYI+ + SRREADR I+ GNV +NG T QV D ++ + + + E Sbjct: 1 MRLNKYIASLNLASRREADRLIQNGNVKVNGIINTNPATQVDENDKIECSIE----QYKE 56 Query: 66 DLVLIALNKPVGIVSTTEDGERDNIVDFVN-HSKRVFPIGRLDKDSQGLIFLTNHGDLVN 124 + + I LNKP G V ++ E I + + ++P+GRLDKDS GLI TN G Sbjct: 57 NKIYIKLNKPRGYVVSSNKNEGKPIYNLIKKDFDNIYPVGRLDKDSSGLILFTNDGVFAK 116 Query: 125 KILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQG 184 +I+ + EKEY V VD I + ++ + G+ + G K KVK+ F I L +G Sbjct: 117 QIIGENTNCEKEYYVRVDDNIPDGALQKLEYGISLDGQKLKPAKVKRVNKNSFHIILTEG 176 Query: 185 LNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFK 234 NRQIRRMC+ G+EV L+R RI + L + G ++ LT +E+ + K Sbjct: 177 KNRQIRRMCQKVGFEVIILKRLRISGILLEDLKEGTFKSLTKEEIESILK 226 >UniRef50_A3ESK0 Pseudouridine synthase n=4 Tax=Bacteria RepID=A3ESK0_9BACT Length = 616 Score = 249 bits (637), Expect = 6e-65, Method: Composition-based stats. Identities = 90/290 (31%), Positives = 139/290 (47%), Gaps = 10/290 (3%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIE 60 D +RL K ++ G+ SRR A+ I G V +NG T G +V P D V V+G+ + Sbjct: 14 EDGLIRLQKLLAHRGLASRRNAEEMIRGGLVKVNGIVVTVPGTKVHPETDRVTVDGKTV- 72 Query: 61 PREAEDLVLIALNKPVGIVSTTEDGERDN-IVDFVNHSKRVFPIGRLDKDSQGLIFLTNH 119 P E E L KP GIVST D + + DF + +GRLD S+G++ LTN+ Sbjct: 73 PVEPEPF-LFLFYKPKGIVSTLHDPDEKTTLKDFFPQINPLIHVGRLDIQSEGVLLLTNN 131 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAG-VPILGTVTKKCKVKKE----AP 174 GDL +IL + + YLV V + E + + +G V + G + ++++E Sbjct: 132 GDLAQRILHPRYEIPRTYLVKVQGVVKPEHLDRLRSGKVRLDGRPVQPLELEQERLTETN 191 Query: 175 FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFK 234 +RITL +G NR++RR+ + Y V KL R N+ L+G+ GE+R +T +E+ L Sbjct: 192 SWYRITLTEGRNREVRRLFDALHYFVLKLTRIAFGNLDLAGLEPGEYRLVTPEEIALLLS 251 Query: 235 LIENSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPG 284 E P + P+ P + R S + F+ P Sbjct: 252 GARWKRKESIPPPERSPRKPNPATPSSPDFRRHSFRSRTTSPDRTFSGPA 301 >UniRef50_Q1J0B9 Pseudouridine synthase n=5 Tax=Deinococci RepID=Q1J0B9_DEIGD Length = 253 Score = 249 bits (637), Expect = 7e-65, Method: Composition-based stats. Identities = 79/240 (32%), Positives = 119/240 (49%), Gaps = 3/240 (1%) Query: 2 LPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEP 61 + + RL K ++ +G+ SRR A+ I G V +NG+ AT+G V P D V+V+G+LIE Sbjct: 1 MTEGGERLQKRLARAGVASRRAAEDLITAGRVTVNGQIATLGRTVMPDDEVRVDGRLIEA 60 Query: 62 REAEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHG 120 E V L KP G V+T D R N++ + + P+GRLDKDS+GL+ LT G Sbjct: 61 PAQES-VTFLLYKPAGYVTTARDEYGRRNVLSAMPPIPGLHPVGRLDKDSEGLLLLTTDG 119 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRIT 180 L + HEK Y +R + G+ + + + +T Sbjct: 120 QLTLTLTHPRYGHEKAYRAWTAGQPVAAELRVLETGIELADGPARALSARPARGGAL-VT 178 Query: 181 LVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSS 240 L +G NRQ+RRM + GY V +L R R+ + L + GE+R L+ +L DL + Sbjct: 179 LTEGRNRQVRRMLDAIGYPVHRLLRYRVGGLWLGDLEPGEYRLLSPRDLHDLLHPAQVPR 238 >UniRef50_B9KY92 Pseudouridine synthase n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KY92_THERP Length = 282 Score = 249 bits (637), Expect = 7e-65, Method: Composition-based stats. Identities = 87/271 (32%), Positives = 139/271 (51%), Gaps = 10/271 (3%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPG-DVVKVNGQLIEPR 62 + RL + ++ G+ SRR+A+ I G V ++G +G +V P + V+G+ P Sbjct: 6 TEQRLQRVLAAHGVASRRKAEELILAGRVTVDGVVVRELGRKVDPERQEICVDGK---PL 62 Query: 63 EAEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGD 121 +E I L+KPVG ++TT D R ++D V +RV P+GRLD+DS GL+ LTN GD Sbjct: 63 HSEPRRYIVLHKPVGYITTTADEYGRKTVLDLVQVPERVVPVGRLDRDSSGLLLLTNDGD 122 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK----KEAPFVF 177 L+ +I + EKEY V VD E + GVP+ G + +++ + V+ Sbjct: 123 LIYRITHPRYELEKEYEVLVDGFPPPEVEEALRRGVPVDGRPVRIRRLEAIRVEPQGTVY 182 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIE 237 R+ + +G NR IRR+ E GY V +L+R R+ + L +P G WRDLT E+ L + + Sbjct: 183 RVVIHEGRNRIIRRVFERVGYPVLRLQRVRVGPLRLGDLPPGRWRDLTASEVAALRRAVG 242 Query: 238 NSSSEVKPKAKAKPKTAGIKRPVVKMEKTAE 268 + + G P + ++ Sbjct: 243 LPEFPEGAVGRERKARGGRGMPARRGDRRPS 273 >UniRef50_C4XEA6 Pseudouridine synthase n=1 Tax=Mycoplasma fermentans PG18 RepID=C4XEA6_MYCFE Length = 269 Score = 249 bits (637), Expect = 8e-65, Method: Composition-based stats. Identities = 79/243 (32%), Positives = 137/243 (56%), Gaps = 3/243 (1%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREA 64 +R+ K I+++G CSRR+A+ YIE+ V +NGK +GD+ D +K+N QLI ++ Sbjct: 26 ELIRVQKLIAQTGYCSRRKAEEYIEKKLVKVNGKIVQLGDKASENDEIKINNQLISLQKP 85 Query: 65 EDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLV 123 V LNKP +ST +D R +VD +N+S+R+ P+GRLD D+ G + LTN +++ Sbjct: 86 N-FVYFLLNKPKKTISTVKDPKGRKTVVDLINYSERIAPVGRLDYDTTGALLLTNDWEMI 144 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQ 183 NK+ + + Y V +D P++ + + ++AG+ + G +K+ V + + +TL Sbjct: 145 NKLTHPKYEILRTYRVRIDSPLSLKEFKLINAGLIVNGKFSKQI-VDQVDTKSYLVTLHV 203 Query: 184 GLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSSSEV 243 G I+ + + +EV L+R N+++ +P G +R LT E+ DL LI ++ Sbjct: 204 GSYHHIKELFKALNHEVINLKRVSFANLTVEKMPEGSYRTLTLKEIKDLKVLISLQEKKL 263 Query: 244 KPK 246 K Sbjct: 264 CQK 266 >UniRef50_C2MA52 Pseudouridine synthase n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2MA52_9PORP Length = 472 Score = 249 bits (636), Expect = 1e-64, Method: Composition-based stats. Identities = 83/243 (34%), Positives = 131/243 (53%), Gaps = 10/243 (4%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEPRE 63 +RLNK++S SG+CSRR AD+YI G V +NG +G QV P D V V+ + + Sbjct: 204 EPIRLNKFLSNSGLCSRRTADQYIAAGRVKVNGAVVSELGSQVLPTDQVMVDDKPVTL-- 261 Query: 64 AEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHS--KRVFPIGRLDKDSQGLIFLTNHG 120 E V + LNKP V+T D E R ++D V+++ +R++PIGRLD+++ G++ LTN G Sbjct: 262 -EAKVYVLLNKPKNCVTTLTDPEGRRTVMDLVHNACTERIYPIGRLDRNTTGILLLTNDG 320 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVT---KKCKVKKEAPFVF 177 DL +++ +K Y V +DK +T E ++ ++ G + + + Sbjct: 321 DLAVRLMHPAFRKKKIYEVALDKEVTVEHMQMIAHGFELEDGEIHADAISYITGQTHDKV 380 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIE 237 I + G NR +RR+ EH GY V L+R ++ +P G WR LT +E+ L I+ Sbjct: 381 GIEIHSGRNRIVRRIFEHLGYRVVHLDRVYYAGLTKKDLPRGRWRYLTPEEVRYLRMGIK 440 Query: 238 NSS 240 Sbjct: 441 EQE 443 >UniRef50_Q8ZGM2 Ribosomal small subunit pseudouridine synthase A n=134 Tax=Gammaproteobacteria RepID=RSUA_YERPE Length = 235 Score = 249 bits (636), Expect = 1e-64, Method: Composition-based stats. Identities = 63/231 (27%), Positives = 119/231 (51%), Gaps = 8/231 (3%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGD-QVKPGDVVKVNGQLIEPREAE 65 +RL+K++S+ SR R + V ++G+ G ++ P V+ +G ++ Sbjct: 1 MRLDKFLSQQLGVSRALVARELRAKRVTIDGEVVKSGAIKLTPEQDVRFDGNPLQQMVGP 60 Query: 66 DLVLIALNKPVGIVSTTEDGERDNIVDFVNHS--KRVFPIGRLDKDSQGLIFLTNHGDLV 123 LNKP G V +TED + ++ F++ ++ GRLD D+ GL+ +T+ G Sbjct: 61 R--YFMLNKPQGYVCSTEDPDHPTVLYFLDEPVAYKLHAAGRLDIDTTGLVLMTDDGQWS 118 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGT--VTKKCKVKKEAPFVFRITL 181 +++ + EK YLVT++ P++++ + + GV + +TK ++ P R+T+ Sbjct: 119 HRVTSPRHHCEKTYLVTLEHPLSDDTAQQFADGVQLYNEKSLTKPAQLDVIEPQRVRLTI 178 Query: 182 VQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDELID 231 +G Q++RM G V +L R RI +++L + GE+R LT +E+ Sbjct: 179 SEGRYHQVKRMFAAVGNRVIELHRERIGDITLDDDLAPGEYRPLTTEEIAS 229 >UniRef50_B2V6W2 Pseudouridine synthase n=5 Tax=Bacteria RepID=B2V6W2_SULSY Length = 244 Score = 248 bits (635), Expect = 1e-64, Method: Composition-based stats. Identities = 76/244 (31%), Positives = 126/244 (51%), Gaps = 16/244 (6%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKP-GDVVKVNGQLIEPREA 64 +RL+K++S G SR + + I++G V +N + + P D V++ + I +E Sbjct: 1 MRLDKFLSNQGFGSRSQVQKLIKKGFVKVNDEIVKDPSYHIDPMKDKVELEDEEILYKEN 60 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDF---VNHSKRVFPIGRLDKDSQGLIFLTNHGD 121 LNKP G ++ TED E ++D + + ++FP+GRLD D++GL+ LT G Sbjct: 61 ---HYFMLNKPAGYITATEDEEYPTVLDLFSDLPIASKLFPVGRLDIDTEGLLILTTDGQ 117 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITE-EFIRGMSAGVPILGTV--TKKCKVKKEA----P 174 +++ + EKEY V+ I+ +F + G+ + TK KVK Sbjct: 118 FGHRLSHPKWNIEKEYYAIVEGDISNIDFSESENKGIYLKKEKYQTKPFKVKVLNTSKDK 177 Query: 175 FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDLF 233 ITL +G ++R+ + GY V L+R RI N+ L + GE+R+LT+ E+ DL Sbjct: 178 SEILITLTEGKYHIVKRIMQELGYPVLYLKRIRIGNLKLDEDLLPGEFRELTEKEIKDLK 237 Query: 234 KLIE 237 KLI+ Sbjct: 238 KLIK 241 >UniRef50_A4SY81 Pseudouridine synthase n=5 Tax=Proteobacteria RepID=A4SY81_POLSQ Length = 587 Score = 248 bits (635), Expect = 1e-64, Method: Composition-based stats. Identities = 71/265 (26%), Positives = 135/265 (50%), Gaps = 9/265 (3%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPR-EA 64 +V+L+K +++ G+ SRR+ + I QG V +NG A IG ++ P D V++NG+ + + + Sbjct: 196 TVKLHKVLADVGMGSRRDMEDLIIQGRVSVNGLPAHIGQRIGPTDQVRINGKPVHRKIQT 255 Query: 65 EDLVLIALNKPVG-IVSTTEDGERDNIVDFVNHSK--RVFPIGRLDKDSQGLIFLTNHGD 121 + +I +KP G IVS ++ R + D + + R +GRLD +++GL+ T G+ Sbjct: 256 KPPRVIMYHKPAGEIVSQSDPEGRPTVFDRLPKPRQGRWIAVGRLDFNTEGLLLFTTSGE 315 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK----KEAPFVF 177 L N+++ E+EY V + +++E + +G+ + K ++ + A + Sbjct: 316 LANRLMHPRYGVEREYAVRILGDLSQENTALLKSGITLDDGQAKFLRLAMGGGEGANRWY 375 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSG-IPLGEWRDLTDDELIDLFKLI 236 + L +G NR++RRM E G+ V +L RTR L + G+W ++ + +L K Sbjct: 376 HVALSEGRNREVRRMFEAVGHTVSRLIRTRYGIFLLPPRLRRGKWEEIEAGGIYNLMKSA 435 Query: 237 ENSSSEVKPKAKAKPKTAGIKRPVV 261 + K ++ +RP Sbjct: 436 GLKMPQPSDKGRSPNPNNRDRRPAG 460 >UniRef50_A3HY40 Pseudouridine synthase n=1 Tax=Algoriphagus sp. PR1 RepID=A3HY40_9SPHI Length = 434 Score = 248 bits (634), Expect = 1e-64, Method: Composition-based stats. Identities = 86/237 (36%), Positives = 131/237 (55%), Gaps = 9/237 (3%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEP 61 D+ RLNKYI+ SGICSRREAD I +G V +NGK T +G +V D V G+ I P Sbjct: 198 EDTLFRLNKYIANSGICSRREADDLIAKGLVSVNGKVVTELGLKVSKFDRVVYQGKKINP 257 Query: 62 REAEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHS--KRVFPIGRLDKDSQGLIFLTN 118 E V + LNKP ++TT+D ER ++ V ++ +R+FP+GRLD+++ GL+ TN Sbjct: 258 ---EKPVYVLLNKPKDFITTTDDPLERKTVMALVGNACEERIFPVGRLDRNTTGLLLFTN 314 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTK--KCKVKKEAPFV 176 G+L K+ N +K Y VT+DKP+T + + G+ + + +V + Sbjct: 315 DGELAAKLSHPSNQIKKIYQVTLDKPLTHNDEKDILEGLTLEDGEVEVDDMQVLSVDRKI 374 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF 233 + + G NR +RR+ H GYEV L+R + + G +R L++ E+I L Sbjct: 375 LGLEIHVGKNRIVRRIFAHLGYEVTALDRVMYAGLDKKDLKRGNYRFLSEQEVIKLK 431 >UniRef50_C4XSY8 Pseudouridine synthase n=11 Tax=Desulfovibrionales RepID=C4XSY8_DESMR Length = 322 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 95/295 (32%), Positives = 145/295 (49%), Gaps = 18/295 (6%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEPREAE 65 R+NK ++ +G+CSRR AD I G V +NG T G ++ P D + V+G + E Sbjct: 10 RINKALASAGVCSRRHADDLIAAGRVTVNGAVVTEAGLRIDPARDALAVDGAPVNL-APE 68 Query: 66 DLVLIALNKPVGIVSTTEDGE-RDNIVDFVN---HSKRVFPIGRLDKDSQGLIFLTNHGD 121 + +AL+K G+V+T D E R + D + KR+FP+GRLD S+GL+ LT G+ Sbjct: 69 IPITLALHKKPGVVTTASDPEGRPTVFDGLPEVWRGKRLFPVGRLDFFSEGLLLLTTDGE 128 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI-LGTVTKKCKVKK-----EAPF 175 L ++ K Y VTV +T + + M+ G+ + G + + Sbjct: 129 LALRLTHPRWHVPKRYRVTVRGQVTPDMLGTMARGMRLAEGERLAPVAARVVEGPAQDRS 188 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 + + L QG+NRQIRRMC G V +L R V+L +PLG R+LT EL L + Sbjct: 189 ILEMELHQGVNRQIRRMCRDLGLTVLRLARVSQGPVALGDLPLGACRELTPAELATLRQS 248 Query: 236 IENSSSEVKPKAKAKPKTA-GIKRPVVKMEKTAEKGGRP----ASNGKRFTSPGR 285 + ++V P TA G + + + + GG+ AS G+ T P R Sbjct: 249 VGLDDADVAPAPPRPRPTAEGDTKRPPRPARPPQAGGKRPATKASGGETETGPRR 303 >UniRef50_Q01SF5 Pseudouridine synthase n=3 Tax=Bacteria RepID=Q01SF5_SOLUE Length = 249 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 89/249 (35%), Positives = 143/249 (57%), Gaps = 9/249 (3%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEPR 62 + RL K +S++G+ SRR+A++ +++G V +NG T +G + D +KV+G+L++ Sbjct: 2 AEERLQKILSQAGVSSRRQAEKLMQEGRVTVNGSVITELGSKADLDRDHIKVDGRLLK-- 59 Query: 63 EAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTNHG 120 + + IALNKP G V+T D E R+ ++D ++ +RV+P+GRLD S+GL+ LTN G Sbjct: 60 APKHQIYIALNKPKGTVTTVHDPEGRETVMDLLHRVKERVYPVGRLDYHSEGLLLLTNDG 119 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA---PFVF 177 +L N I+ A EK Y+V V +T E GVP+ G T +K + + Sbjct: 120 ELANSIMSAATHLEKTYVVKVTGTLTAEQEEKFRTGVPLSGRRTLPAGLKLLSRAENPWY 179 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIE 237 + L +G N QIR M HFG V+KL+R RI + L + G +R L ++++ L + I+ Sbjct: 180 EVKLTEGRNNQIRMMFRHFGKLVEKLKRVRIGPIELGTLKTGAFRYLDEEDVAKLKRAIQ 239 Query: 238 NSSSEVKPK 246 SS + K Sbjct: 240 RSSQKPAKK 248 >UniRef50_A4BW35 Pseudouridine synthase n=3 Tax=Flavobacteriaceae RepID=A4BW35_9FLAO Length = 305 Score = 248 bits (633), Expect = 2e-64, Method: Composition-based stats. Identities = 86/240 (35%), Positives = 139/240 (57%), Gaps = 10/240 (4%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEP 61 + +RLNKYI+ SG+CSRREAD YIE G+V +NG T +G +V+P DVV+ +G I P Sbjct: 68 ESTGIRLNKYIANSGVCSRREADTYIEHGSVEVNGNLVTEMGYKVQPDDVVRFDGTGITP 127 Query: 62 REAEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHS--KRVFPIGRLDKDSQGLIFLTN 118 + + I LNKP ++T +D R ++D ++++ +R++P+GRLD+++ GL+ TN Sbjct: 128 EQKK---YILLNKPKNYITTMDDDRGRKTVMDLISNATKERIYPVGRLDRNTTGLLLFTN 184 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGT---VTKKCKVKKEAPF 175 G+L K+ +D K Y ++DK + + + + V I G + V + Sbjct: 185 DGELAKKLTHPKHDVRKLYHASLDKKLELKDLEKLRGEVLIEGKKVFIDAVSYVDGQPKS 244 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 I + G NR +R++ EH GY+V KL+R ++ +P G WR+LT+ EL +L L Sbjct: 245 EVGIEIHSGRNRIVRKIFEHLGYKVSKLDRVIFAELTKRNLPRGRWRELTNQELSNLQML 304 >UniRef50_A4J9G8 Pseudouridine synthase n=47 Tax=Bacteria RepID=A4J9G8_DESRM Length = 249 Score = 248 bits (633), Expect = 2e-64, Method: Composition-based stats. Identities = 75/245 (30%), Positives = 130/245 (53%), Gaps = 13/245 (5%) Query: 1 MLPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPG-DVVKVNGQL 58 M + +RL++ ++ G+ +R+E + I+ V +NG+ A G + P D ++V G++ Sbjct: 1 MAENEKLRLDRLLNHMGLGTRKEIKKLIKAKQVMVNGELAMDPGLHIFPQRDHIEVQGEV 60 Query: 59 IEPREAEDLVLIALNKPVGIVSTTEDGERDNIVDFVN---HSKRVFPIGRLDKDSQGLIF 115 IE RE + + LNKP ++S TED ++D ++ HS FP+GRLDKD++GL+ Sbjct: 61 IEYRE---YIYLMLNKPQDVLSATEDASDKVVIDLLDPTYHSFNPFPVGRLDKDTEGLLL 117 Query: 116 LTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGT-VTKKCK---VKK 171 LTN+G L +++L K Y V +TEE + + GV + T + ++ Sbjct: 118 LTNNGKLAHQLLSPKKHVPKTYYALVQGLVTEEDVAAFARGVELDDGYRTLPGQLKIIRS 177 Query: 172 EAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELI 230 +T+ +G Q++RM E G V L+R + + L + GE+R+LTD+E+ Sbjct: 178 APQSEIELTIYEGKYHQVKRMFEAVGKRVIYLKRLSMGPLVLDNNLKPGEYRELTDEEIA 237 Query: 231 DLFKL 235 L + Sbjct: 238 LLQEA 242 >UniRef50_Q3MC44 Pseudouridine synthase n=21 Tax=Cyanobacteria RepID=Q3MC44_ANAVT Length = 288 Score = 247 bits (632), Expect = 2e-64, Method: Composition-based stats. Identities = 87/265 (32%), Positives = 133/265 (50%), Gaps = 15/265 (5%) Query: 2 LPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPG-DVVKVNGQLIE 60 L + RL K +++ GI SRREA+ I + V +NG A +G +V P D++ V+G+ + Sbjct: 24 LSNMEARLQKVLAQWGIASRREAEEMIRRSRVQINGTLAELGQKVNPERDIITVDGKSVS 83 Query: 61 PREAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSKR----VFPIGRLDKDSQGLIF 115 + L + LNKP G+VST D + R ++D + R + P+GRLD S G + Sbjct: 84 AQRHHRLTYLLLNKPTGVVSTCYDPQGRKTVLDLLPEELRKGSGLHPVGRLDAYSTGALI 143 Query: 116 LTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAP- 174 LTN GDL K+ ++ K Y + V E ++ GV + G T+K KV Sbjct: 144 LTNDGDLTFKLTHPSHNIPKTYQILVKGHPPEAVLKMWREGVLLDGRKTRKAKVSLLESL 203 Query: 175 ---FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSG-----IPLGEWRDLTD 226 I L +G NRQIRR+ E GY V KL RT I ++ L + G +R L D Sbjct: 204 AEKSRLEIVLQEGRNRQIRRVAEQLGYPVIKLHRTAIGSIQLQTSKQPLLRAGNYRILRD 263 Query: 227 DELIDLFKLIENSSSEVKPKAKAKP 251 DE+ L + +++ ++ +P Sbjct: 264 DEIRSLQEQLKHIPTQRIKVQNPQP 288 >UniRef50_Q6G8H4 Pseudouridine synthase n=61 Tax=Firmicutes RepID=Q6G8H4_STAAS Length = 231 Score = 247 bits (632), Expect = 3e-64, Method: Composition-based stats. Identities = 68/231 (29%), Positives = 119/231 (51%), Gaps = 8/231 (3%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKP-GDVVKVNGQLIEPREA 64 +R++K+++ G+ +R E + +++G V +N + ++P D + V G+LIE E Sbjct: 1 MRIDKFLANMGVGTRNEVKQLLKKGLVNVNEQVIKSPKTHIEPENDKITVRGELIEYIEN 60 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRV--FPIGRLDKDSQGLIFLTNHGDL 122 V I LNKP +S TED ++D + + + F +GRLDKD++GL+ +TN GD Sbjct: 61 ---VYIMLNKPKDYISATEDHHSKTVIDLIPEYQHLNIFTVGRLDKDTEGLLLITNDGDF 117 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLV 182 ++++ K+Y V PITE+ I+ GV + K + +T+ Sbjct: 118 NHELMSPNKHVSKKYEVISANPITEDDIQAFKEGVTLSDGKVKPAILTYIDNQTSHVTIY 177 Query: 183 QGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDL 232 +G Q++RM EV L R +I ++ L + GE+R LT+++ L Sbjct: 178 EGKYHQVKRMFHSIQNEVLHLRRIKIADLELDSNLDSGEYRLLTENDFDKL 228 >UniRef50_C4V2S0 Pseudouridine synthase n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V2S0_9FIRM Length = 290 Score = 247 bits (632), Expect = 3e-64, Method: Composition-based stats. Identities = 83/293 (28%), Positives = 133/293 (45%), Gaps = 24/293 (8%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDV-VKVNGQLIEPRE 63 RL K IS +G SRR A+ I G V ++G T +G + + V+G I R Sbjct: 2 EERLQKIISNAGAASRRAAEALIRAGRVTVDGLPVTALGGKYDAARHEIAVDGTPI--RR 59 Query: 64 AEDLVLIALNKPVGIVSTT-EDGERDNIVDFVNHSK-RVFPIGRLDKDSQGLIFLTNHGD 121 E I L+KP G +ST +D R ++D + H R++P+GRLD D++GL+ +TN G Sbjct: 60 NERRFYILLHKPRGCLSTAYDDRGRRTVLDLLPHFPARLYPVGRLDADTEGLLIITNDGA 119 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKV----KKEAPFVF 177 + +L + +K Y V +TE+ + + G+ + T ++ ++ V Sbjct: 120 MTQGLLHPRFEIDKVYRAEVTGNVTEDGLTALRNGILLDDGRTAPARLRVLHREGERTVV 179 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIE 237 + +G RQ+RRM G V++L R R ++L G+ G +R LT DE+ +L K+ Sbjct: 180 ETIIHEGRKRQVRRMFAAIGCRVQRLCRVRFAMLTLDGVSCGSFRHLTSDEIHELKKIAG 239 Query: 238 NSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKGR 290 S + + GGR S + P RK R Sbjct: 240 VMHSGEDSRR--------------RRGSCGNDGGRCGSGTRGQCDPARKDAAR 278 >UniRef50_C8PSZ6 Ribosomal large subunit pseudouridine synthase B n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PSZ6_9SPIO Length = 252 Score = 247 bits (632), Expect = 3e-64, Method: Composition-based stats. Identities = 82/240 (34%), Positives = 119/240 (49%), Gaps = 6/240 (2%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREA 64 +RL Y++ +G+ SRR ++ IE+G V +NG T +G +V GD V +G+ + P Sbjct: 14 EMRLQVYLAHAGVASRRACEKIIEEGRVSVNGTVVTGMGSKVCAGDTVLFDGKPVHPE-- 71 Query: 65 EDLVLIALNKPVGIVSTTEDG-ERDNIVDFVN--HSKRVFPIGRLDKDSQGLIFLTNHGD 121 + LNKP G V T D R D + +S+R++ IGRLD S G I TN GD Sbjct: 72 ARKCYVLLNKPAGFVCTLSDEKGRPTAADLLKEAYSERLYNIGRLDMFSSGAILFTNDGD 131 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITL 181 KI EKEY++ + E + G+ + G K RI L Sbjct: 132 FAAKIEHPSAQIEKEYVIETTQDFPPELLTRFERGIRVDGIFYKCRSAAAVNRRKLRIVL 191 Query: 182 VQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSSS 241 V+G NR+IRR+ + F +K+L R RI N+ L + GE+RDLT E L L + + Sbjct: 192 VEGKNREIRRVLDSFNCTIKRLVRVRIGNLELGTLKAGEFRDLTVQERQALLGLAAQNDN 251 >UniRef50_Q9HZ55 Ribosomal large subunit pseudouridine synthase B n=67 Tax=Gammaproteobacteria RepID=RLUB_PSEAE Length = 386 Score = 247 bits (631), Expect = 3e-64, Method: Composition-based stats. Identities = 83/301 (27%), Positives = 143/301 (47%), Gaps = 16/301 (5%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAE 65 +L K ++ G+ SRR+ + +I +G V +NG A++G +V D + V+G LI EA Sbjct: 13 GEKLQKVLARLGVGSRRDVEVWIAEGRVNVNGSVASLGQRVDSHDAITVDGHLIRREEAA 72 Query: 66 DLV--LIALNKPVGIVSTTEDGE-RDNIVDFVNHSK--RVFPIGRLDKDSQGLIFLTNHG 120 + V ++ NKP G V T +D E R I D + + R +GRLD ++ GL+ T G Sbjct: 73 ESVRRVLIYNKPEGEVCTRDDPEGRPTIFDRLPRLRTGRWINVGRLDINTTGLLLFTTDG 132 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA-----PF 175 +L N+++ + ++EY V V +TEE I + GV + K +++ Sbjct: 133 ELANRLMHPSYEMDREYAVRVRGEVTEEMIERLLNGVMLEDGPAKFSDIQQAPGGEGFNH 192 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDELIDL-- 232 + +++G NR++RR+ E G V +L+R R V L S + +G +R++ E+ L Sbjct: 193 WYHCVVMEGRNREVRRLWESQGLVVSRLKRVRFGPVFLTSELTMGRYREMDQREIDILSE 252 Query: 233 ---FKLIENSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKG 289 K + K + KA+ + RP+ + E+ R + R Sbjct: 253 EVGLKPVALPGMTTKAREKAERQQRKQARPLARSERPEAGRKRAPRREDGENAARRAPAS 312 Query: 290 R 290 R Sbjct: 313 R 313 >UniRef50_C4FUC8 Pseudouridine synthase n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FUC8_9FIRM Length = 243 Score = 247 bits (631), Expect = 3e-64, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 120/238 (50%), Gaps = 15/238 (6%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIG-DQVKPG-DVVKVNGQLIEPREA 64 +R+ KY++++G SR++ + + Q V +N + + G QV PG D V V GQL+ Sbjct: 1 MRIEKYLADTGWGSRKDIKQLLAQKIVTINDQVCSKGGTQVTPGSDCVAVGGQLVPY--- 57 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKR---VFPIGRLDKDSQGLIFLTNHGD 121 + LNKP GI+S TED ++D++ + +FP+GRLD D+ GL+ LTN+G Sbjct: 58 QRYHYYLLNKPEGILSATEDRHHQTVIDWLGEGYQHLDLFPVGRLDIDTTGLLLLTNNGQ 117 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK------KEAPF 175 L +++L +K Y T+ + + I AG+ + + ++ + Sbjct: 118 LAHQLLSPKKKVDKTYTATIRGLVDQADIAAFEAGLDLGDFTSLPAELTVLSQDVDQGTS 177 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDL 232 ++ + +G Q++RM + G EV L R + + L + G+WR LT+ E L Sbjct: 178 QIQVIIQEGKFHQVKRMFQAVGKEVLSLHRLAMGPLRLESDLAHGQWRSLTEQEAQAL 235 >UniRef50_B3QY10 Pseudouridine synthase n=10 Tax=Chlorobiaceae RepID=B3QY10_CHLT3 Length = 297 Score = 247 bits (630), Expect = 4e-64, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 133/247 (53%), Gaps = 8/247 (3%) Query: 2 LPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKP-GDVVKVNGQLI 59 + D +RLNK+I+ G SRR+AD IEQG V +NGK +G +V D V VNG+ + Sbjct: 38 INDPIIRLNKFIALCGEASRRKADEMIEQGEVMVNGKVVMELGYKVDRRADEVVVNGKKL 97 Query: 60 EPREAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTN 118 E + I LNKP +V+T+ D + R +V+ V RVFP+GRLD+D+ G++ LTN Sbjct: 98 H--ENTQKIYILLNKPKDVVTTSSDEKSRKTVVELVGLKDRVFPVGRLDRDTTGVLLLTN 155 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPIL--GTVTKKCKVKKEAP-F 175 GDL ++ +K+Y+ T+DK IT ++ + G + G C + + Sbjct: 156 DGDLTYRLTHPTFGVQKQYVATLDKKITSVDLQNIKKGFRLKDTGEKVSPCNARILDDGY 215 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 + + +G N QI RM FGY VKKL R + + + GEWR LT E+ L+K Sbjct: 216 TIWVAIHEGKNHQIHRMFWSFGYNVKKLVRVAYGGLEVGTMRRGEWRFLTQLEVSKLYKQ 275 Query: 236 IENSSSE 242 ++ + Sbjct: 276 VQLEGKQ 282 >UniRef50_C4Z9Y4 Pseudouridine synthase n=16 Tax=Bacteria RepID=C4Z9Y4_EUBR3 Length = 250 Score = 247 bits (630), Expect = 4e-64, Method: Composition-based stats. Identities = 71/240 (29%), Positives = 121/240 (50%), Gaps = 12/240 (5%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVK-PGDVVKVNGQLIEPR 62 + +RL+K++SE G+ +R E + I+ G + +NG A +V D V VNG++++ + Sbjct: 10 NMIRLDKFLSEMGLGTRSEVKKLIKTGQIAINGTVAAKPETKVDTDADEVSVNGRIVKYQ 69 Query: 63 EAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKR--VFPIGRLDKDSQGLIFLTNHG 120 E NKP G VS T D D ++D++ + +FP+GRLD D++GL+ +TN G Sbjct: 70 RYE---YYLFNKPSGCVSATCDNVHDTVMDYITDAVHDDLFPVGRLDIDTEGLLLITNDG 126 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI-LGTVTKKCKV---KKEAPFV 176 L +++L K Y +D +T + I G+ I TK ++ K + Sbjct: 127 ALSHELLSPSKHVAKTYYARIDGEVTLDDIIRFKEGIDIGEEKPTKPAELVIKKSGSVSE 186 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDELIDLFKL 235 +T+ +G Q++RM E G V L+R + + L + G +R LT E L ++ Sbjct: 187 IELTITEGKFHQVKRMFEALGKRVIYLKRISMGPLKLPDDLKTGTYRALTQAETDMLMQI 246 >UniRef50_C8WAL4 Pseudouridine synthase n=7 Tax=Coriobacteriaceae RepID=C8WAL4_ATOPD Length = 279 Score = 247 bits (630), Expect = 5e-64, Method: Composition-based stats. Identities = 74/273 (27%), Positives = 126/273 (46%), Gaps = 29/273 (10%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREA 64 +RL ++++ +G+ SRR ++R + G V +NG+ T +G +V P V + A Sbjct: 8 PMRLQRFLARAGVASRRGSERLMTSGRVTVNGQVVTELGSKVDPLVDVV-AVDGVVCSIA 66 Query: 65 EDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHS--KRVFPIGRLDKDSQGLIFLTNHGD 121 E V + LNKP G ++T +D + R IVD V +FP+GRLD D+ GL+F T G Sbjct: 67 EKPVYLMLNKPAGYLTTMKDPQGRPTIVDMVPTDTYPGLFPVGRLDMDTTGLLFFTTDGQ 126 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK----------- 170 + ++L K Y+ V TEE + + G+ + +V+ Sbjct: 127 MAQELLHPSKHVWKHYVAHVVGTPTEEQLNRLREGIELEDGPAAPAEVEIISDDVKMKNL 186 Query: 171 -----------KEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLG 219 E + +T+ +G Q+++M + V L R + L+ + G Sbjct: 187 LAPQGLGKTGGGEPNALVSVTIREGRKHQVKKMLLAIHHRVLALHRDTFGPLHLTRVKEG 246 Query: 220 EWRDLTDDELIDLFKLI--ENSSSEVKPKAKAK 250 EWR LT++E+ L + I E +S + P +K Sbjct: 247 EWRLLTEEEVTALERTIGREPGTSPIMPLNTSK 279 >UniRef50_A5IXL5 Pseudouridine synthase n=3 Tax=Mycoplasma RepID=A5IXL5_MYCAP Length = 246 Score = 247 bits (630), Expect = 5e-64, Method: Composition-based stats. Identities = 78/244 (31%), Positives = 145/244 (59%), Gaps = 3/244 (1%) Query: 2 LPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEP 61 +P+ VR+ K I++SG+ SRR+A++ I +G VF+NG +++IGD+ D +KVNG++I Sbjct: 1 MPE-LVRVQKLIAQSGLMSRRDAEKMISKGLVFVNGIKSSIGDKASMNDEIKVNGKIINL 59 Query: 62 REAEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHG 120 + LNKP ++T++D R ++D +N S+R+ P+GRLD+++ G++ LT Sbjct: 60 TKNTVFKYYLLNKPKNTITTSKDPKGRHTVIDLINTSERIVPVGRLDRNTTGVLLLTTDY 119 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRIT 180 +LVNK+ + E+ Y +D P+T + R ++AG+ I G ++ + V + + I+ Sbjct: 120 ELVNKLTHPKYEIERVYRARIDSPLTLKEFRELNAGIEIDGKMSYQI-VDQVDTKSYLIS 178 Query: 181 LVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSS 240 L G ++++ E G+ V L+R N+++ +P G +R+LT E+ +L L+E Sbjct: 179 LHVGSYHHVKKLFEKIGHSVLTLKRVSYANLTVDKLPEGMYRELTIKEVKNLKLLVEQQE 238 Query: 241 SEVK 244 ++ Sbjct: 239 KKLC 242 >UniRef50_A5V220 Pseudouridine synthase n=5 Tax=Bacteria RepID=A5V220_ROSS1 Length = 624 Score = 247 bits (630), Expect = 5e-64, Method: Composition-based stats. Identities = 91/287 (31%), Positives = 146/287 (50%), Gaps = 9/287 (3%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKP-GDVVKVNGQLIEPR 62 S+ RL K ++ +GI SRR+ + YI G V +NGK G +V P D + V+G+ I Sbjct: 2 SAERLQKVLASAGIASRRDCEEYIAAGRVMVNGKVVRIPGTRVDPEHDEILVDGRPIGKI 61 Query: 63 EAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGD 121 + L+KP G+VSTT+D + R ++D VN +R+FP+GRLD DS+GL+ LT+ G+ Sbjct: 62 HHRT--YVMLHKPAGVVSTTDDPQGRPTVIDLVNLEQRLFPVGRLDYDSEGLLLLTDDGE 119 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPF----VF 177 L K+ EKEY V +++ + +R GV + G T V+ Sbjct: 120 LTQKLTHPSYQVEKEYRVLLNEAPSPAALRAWRTGVELDGVKTAPAWVELIERTPDGAWV 179 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIE 237 R+ L +G RQIR + GYEV++L R R ++L +P G WR LTD+E+ L + E Sbjct: 180 RVILHEGRKRQIREVARVLGYEVRRLIRVREGPLTLGDLPSGTWRFLTDEEVDMLREHAE 239 Query: 238 NSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPG 284 +++ + + + + + + + R G + T Sbjct: 240 RNAAVAEAEQPRRREQGETQVSGGRRLRRITPSARLLQKGDQVTDTT 286 >UniRef50_Q2S2G3 Pseudouridine synthase n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S2G3_SALRD Length = 249 Score = 246 bits (629), Expect = 5e-64, Method: Composition-based stats. Identities = 77/242 (31%), Positives = 135/242 (55%), Gaps = 12/242 (4%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEPRE 63 +R+NKYI+ +G+CSRR+AD +EQG V ++G+R G V+ G V V+G+ + P E Sbjct: 9 EGMRINKYIAHAGVCSRRDADDLVEQGRVHIDGERVDQHGTCVREGQTVTVDGEEVYPLE 68 Query: 64 AEDLVLIALNKPVGIVSTTEDG-ERDNIVDFV----NHSKRVFPIGRLDKDSQGLIFLTN 118 E + LNKP +STT+D +R ++D + ++ +FP+GRLD+++ G++ ++N Sbjct: 69 FE---YLLLNKPKDTISTTDDPKDRRTVLDAIGVPEDNPSGLFPVGRLDRNTTGVLLVSN 125 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFV-- 176 GDL ++++ + K Y V V + + + GV + +V P Sbjct: 126 DGDLAHRLMHPRYEIPKIYYVRVQDDVKPHQLDQLKRGVELSDGAAAADQVAYLDPQRKT 185 Query: 177 -FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 + L +G NRQIRRM E G+ + +LER + ++ + GEWR L +E+ +L++ Sbjct: 186 DIALELHEGRNRQIRRMMEALGHTIVQLERAKYATLTTGRLQRGEWRRLEPEEVRELYQR 245 Query: 236 IE 237 ++ Sbjct: 246 VD 247 >UniRef50_A5WGV6 Pseudouridine synthase n=7 Tax=Moraxellaceae RepID=A5WGV6_PSYWF Length = 345 Score = 246 bits (629), Expect = 7e-64, Method: Composition-based stats. Identities = 83/296 (28%), Positives = 153/296 (51%), Gaps = 13/296 (4%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPR-- 62 + +L K ++ G+ SRR+ + I+ G V +N K A+IGD+V+ GD ++V+G+LI+ + Sbjct: 41 GTEKLQKALARMGLGSRRQMEEVIKAGRVSINQKPASIGDRVEQGDEIRVDGRLIKYKSE 100 Query: 63 EAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH--SKRVFPIGRLDKDSQGLIFLTNH 119 + ++A KP G + + D E R + + + R +GRLD +S GL+ TN Sbjct: 101 REKRRRVLAYYKPEGEICSANDPEGRTTVFERLPKLTHDRWIMVGRLDINSTGLLLFTND 160 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA----PF 175 G+L ++++ N+ +EY V + +T E +R ++ GV + + K +K+ Sbjct: 161 GELAHRLMHPSNEIVREYAVRILGELTPEMMRNLTDGVMLEDGLAKFEDIKQGGGEGVNK 220 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDELIDLFK 234 + + L +G NR++RR+ E G +V +L RT +V L + G + +L ++ L Sbjct: 221 WYHVKLKEGRNREVRRLIESQGLKVSRLLRTSYGSVDLPKELRTGRFIELDRKDIHRLID 280 Query: 235 LIENSSSE---VKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKK 287 L+ E V KAK K + K + +T+ + GR +++ + TS R + Sbjct: 281 LVGIRPREDMGVHGKAKEKKERFQKKPMKARTIRTSSRSGRASTSTGKNTSATRGR 336 >UniRef50_C9RK28 Pseudouridine synthase n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RK28_FIBSS Length = 243 Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 75/242 (30%), Positives = 125/242 (51%), Gaps = 11/242 (4%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKP-GDVVKVNGQLIEPREA 64 +R+NKYIS SG SRR AD + G V +NG+ + +G QV D V V+G+L++ Sbjct: 1 MRINKYISLSGFASRRAADELVADGRVQVNGETISDLGHQVDETKDQVTVDGKLLKLPTN 60 Query: 65 EDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSKRVF-PIGRLDKDSQGLIFLTNHGDL 122 + +I +KP G V T +D + R + D++ F +GRLD S+GL+ T+ G+L Sbjct: 61 KKTKVIMFHKPAGCVCTKDDPQGRRTVYDYLPPGYHNFKYVGRLDLQSRGLLLFTDDGEL 120 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK-------KEAPF 175 + ++ + + Y V +P++E + + GV I + + Sbjct: 121 LYRLTHPSFEVPRSYYVWTTRPLSESAAQRLVDGVDIRDPEDPDAQEEIAFATDVYLENG 180 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 + L++G NR+IRRM GYE++ L+R + L +P GE+R+LT +EL L + Sbjct: 181 FAELVLIEGKNREIRRMMRAIGYEIRDLKRVSYCQIQLGDLPAGEFRELTPNELNKLRQA 240 Query: 236 IE 237 + Sbjct: 241 VH 242 >UniRef50_C4ZJR2 Pseudouridine synthase n=2 Tax=Betaproteobacteria RepID=C4ZJR2_THASP Length = 379 Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 81/273 (29%), Positives = 142/273 (52%), Gaps = 17/273 (6%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREA 64 RL K ++++G+ SRRE + ++ G + +NG A++G ++ PGD VKVNG+L+ R Sbjct: 115 EPERLQKVLAQAGVASRREIEEWVVAGRISVNGLPASLGQKIGPGDRVKVNGKLVPLRFT 174 Query: 65 ED-LVLIALNKPVGIVSTTEDGE-RDNIVDFVN--HSKRVFPIGRLDKDSQGLIFLTNHG 120 + ++ +KP G + + +D E R + + + R +GRLD ++ GL+ TN G Sbjct: 175 QRSPRVLIYHKPEGEIVSRDDPEGRPTVFERLPILRKGRWLAVGRLDFNTSGLLLFTNDG 234 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKE----APFV 176 DL NK++ + E+EY V + +TEE ++ ++ G+ + K ++ E A Sbjct: 235 DLANKLMHPRYELEREYAVRILGELTEEQVKSLTDGIQLEDGPAKFNLLRDEGGEGANHW 294 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDELIDLFKL 235 +R+T+ +G NR++RRM E G V +L R R +V L + + G W ++ + E L L Sbjct: 295 YRVTISEGRNREVRRMFEAVGLTVSRLMRVRYGSVELPARLKRGMWMEMPEAEACALAGL 354 Query: 236 IENSSSEVKPKAKAKPKTAGIKRPVVKMEKTAE 268 P +++ + KRPV A Sbjct: 355 --------PPPQQSRQQDLRDKRPVKLHRTQAR 379 >UniRef50_A1ZI67 Pseudouridine synthase n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZI67_9SPHI Length = 391 Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 85/235 (36%), Positives = 138/235 (58%), Gaps = 9/235 (3%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPRE 63 +RLN++IS SG+CSRREAD+ IE G + +NGK T +G QV P D VK +L++ Sbjct: 157 EKMRLNRFISNSGVCSRREADKLIEMGMISVNGKVITEMGFQVSPTDTVKYGKRLLK--- 213 Query: 64 AEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHS--KRVFPIGRLDKDSQGLIFLTNHG 120 E V + LNKP ++TT D +R ++D + +S +R++P+GRLD+++ GL+ TN G Sbjct: 214 REKFVYVLLNKPKDFITTTNDPQDRKTVMDLIKNSCDERIYPVGRLDRNTTGLLLFTNDG 273 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAP--FVFR 178 ++ K+ +D +K Y V +DKP+ +E + ++ GV + ++ P + Sbjct: 274 EVAKKLSHPSHDVKKVYQVELDKPLKDEDLDSIAEGVILEDGYAAVDEIAILNPERTLVG 333 Query: 179 ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF 233 + + G NR +RR+ H YEV KL+RT ++ I G+WR L++ E+I L Sbjct: 334 VEIHIGRNRIVRRIFNHLDYEVVKLDRTMYAGLNKKNIDRGDWRYLSEKEVIRLK 388 >UniRef50_C3BQR1 Pseudouridine synthase n=3 Tax=Bacillus RepID=C3BQR1_9BACI Length = 203 Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 102/202 (50%), Positives = 137/202 (67%), Gaps = 1/202 (0%) Query: 35 LNGKRATIGDQVKPGDVVKVNGQLIEPREAEDLVLIALNKPVGIVSTTEDGERDNIVDFV 94 +NG+ G V D+V ++G+ IE +E ++ + IA +KPVGI T D NI++++ Sbjct: 3 INGEVCKHGTIVTENDIVMIDGKTIE-KEDKEKIYIAFHKPVGITCTAADHIDGNIIEYI 61 Query: 95 NHSKRVFPIGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMS 154 NH +R+FP+GRLDK S+GLI LTN G + N+IL +HEKEY+VTVDKP T+ FI GMS Sbjct: 62 NHPERIFPVGRLDKASEGLILLTNDGRIANQILHGDYEHEKEYIVTVDKPFTDWFIDGMS 121 Query: 155 AGVPILGTVTKKCKVKKEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS 214 GV I +TK+CKV + FRI L QG+NRQIRRM FGY V KL+R RIMN+ L Sbjct: 122 RGVKIKDGITKQCKVTRVNSSTFRIILTQGMNRQIRRMSRAFGYTVTKLKRVRIMNIKLD 181 Query: 215 GIPLGEWRDLTDDELIDLFKLI 236 G+ GEWR++T EL +L K + Sbjct: 182 GLEAGEWRNVTVQELQELLKQL 203 >UniRef50_Q55578 Uncharacterized RNA pseudouridine synthase slr0361 n=21 Tax=Cyanobacteria RepID=Y361_SYNY3 Length = 249 Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 74/245 (30%), Positives = 124/245 (50%), Gaps = 14/245 (5%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPG-DVVKVNGQLIEPREA 64 + R+ K +S+ GI SRR A+ I G V +NGK A +GD+ P D + V+G+ I+ Sbjct: 2 AERIQKLLSQWGIASRRHAEEMILAGRVSVNGKVANLGDKADPQQDFLSVDGKQIKADNR 61 Query: 65 EDLVLIALNKPVGIVSTTEDG-ERDNIVDFVN----HSKRVFPIGRLDKDSQGLIFLTNH 119 + + +NKP ++ST +D R ++D + K + P+GRLD++S G + LTN Sbjct: 62 PRDIYLLVNKPRDVLSTCDDPRGRKTVLDLLPQDLQRGKGLHPVGRLDRNSTGALLLTND 121 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFV--- 176 G+L ++ K Y V ++ ++E + +G+ + G T ++ + Sbjct: 122 GELTLRLTHPRYHLPKTYDVWLEGNPSDEDLEKWRSGMMLDGKKTLPATLEVISENKDQI 181 Query: 177 -FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSG----IPLGEWRDLTDDELID 231 +TL +G NRQIRR+ E G V KL R I + L + G++R L+ E+ Sbjct: 182 HLLVTLTEGRNRQIRRLAEELGLTVLKLHRRTIGPLQLHTRGKVLGSGQFRFLSPAEIRL 241 Query: 232 LFKLI 236 L K + Sbjct: 242 LKKQV 246 >UniRef50_Q3B289 Pseudouridine synthase n=2 Tax=Chlorobium/Pelodictyon group RepID=Q3B289_PELLD Length = 250 Score = 245 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 78/243 (32%), Positives = 137/243 (56%), Gaps = 7/243 (2%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPG-DVVKVNGQLIE 60 + +VR+N+Y++ GI SRR AD+ + +G V +NG A G +V PG D V V+G Sbjct: 9 QNEAVRINRYLAMCGIASRRAADQMVLEGRVTINGVLASEPGVKVVPGKDEVIVDGSKFA 68 Query: 61 PREAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNH 119 E + I NKP +++T+ D R+ ++DF++ ++RV+P+GRLD+ + G++ LTN Sbjct: 69 QPEGRK-IYILFNKPRNVITTSSDERNREMVLDFIDVNERVYPVGRLDRKTTGVLLLTND 127 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPIL--GTVTKKCKVK-KEAPFV 176 G L NK++ ++ +KEY+ +D P + + ++ G+ + G C+ K Sbjct: 128 GMLANKLMHPSSNVKKEYIAVLDAPFPQASLPLLTGGMRLSDTGEKVSPCQAKIMGDGSQ 187 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLI 236 I++ +G N Q+RRM + G+EV +L+R +++ + G+WR LT E+ L L Sbjct: 188 VWISIHEGKNHQVRRMFKTLGFEVTRLDRPTYAGLTVGDLRRGQWRHLTRTEVQQLRHLA 247 Query: 237 ENS 239 + Sbjct: 248 GSP 250 >UniRef50_Q3IDR5 Pseudouridine synthase n=3 Tax=Alteromonadales RepID=Q3IDR5_PSEHT Length = 229 Score = 244 bits (624), Expect = 2e-63, Method: Composition-based stats. Identities = 90/229 (39%), Positives = 137/229 (59%), Gaps = 4/229 (1%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREA 64 + +RL KYI+ +G+CSR++A R I++G V +N + A D V D + VNGQ+I+ Sbjct: 3 TKIRLAKYIAHAGVCSRKQASRLIDEGAVIVNNRPANHIDHVDEQDQITVNGQIIK--GT 60 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVN 124 +L+ A +KPVGI + + ++ + RV+PIGRLDKDS+GL+ LTN G+L N Sbjct: 61 AELIYFAYHKPVGIDCKLDQNDPASLYHHLPTITRVYPIGRLDKDSRGLLILTNDGELCN 120 Query: 125 KILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQG 184 +++ K YLV+V+K I EF M+AGVP+ +T C V+K A F I L QG Sbjct: 121 QLIHPDFHQPKRYLVSVNKSIDAEFCTKMAAGVPVDKQITLPCSVEKIADKQFSIILKQG 180 Query: 185 LNRQIRRMCEHFGYEVKKLERTRIMNVSLS--GIPLGEWRDLTDDELID 231 LNRQIR+M + GY+V L R +I ++L + G++ + ++I Sbjct: 181 LNRQIRKMAHYCGYKVIDLYREQISELTLQTLNLAQGQYIAINKSDIIK 229 >UniRef50_Q11YT0 Pseudouridine synthase n=9 Tax=Bacteroidetes RepID=Q11YT0_CYTH3 Length = 562 Score = 244 bits (624), Expect = 2e-63, Method: Composition-based stats. Identities = 94/239 (39%), Positives = 139/239 (58%), Gaps = 11/239 (4%) Query: 3 PDS-SVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIE 60 PDS +RLNKYIS SGICSRREAD+ I +G V +NG T +G +VKPGD VK N +++ Sbjct: 324 PDSFEIRLNKYISNSGICSRREADQLIIEGTVKVNGIVVTELGYKVKPGDSVKYNNKVLN 383 Query: 61 PREAEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHS--KRVFPIGRLDKDSQGLIFLT 117 P E V + LNKP ++T ED +R ++ V ++ +R++P+GRLD+++ GL+ T Sbjct: 384 P---EKSVYVLLNKPKDFITTMEDENDRKTVMQLVANATKERIYPVGRLDRNTTGLLLFT 440 Query: 118 NHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAG-VPILGTVTKKCKVKKEAPF- 175 N G+L K+ N +K Y V +DKPIT E + G + + K + +P Sbjct: 441 NDGELAQKLTHPSNKVKKIYEVELDKPITAEDFDKIVDGKIHLFDGPVKVDEAAIISPSK 500 Query: 176 -VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF 233 + I + +G NR +RR+ E GY+V KL+R ++ IP G WR LT E+ + Sbjct: 501 KIIGIEIHEGRNRIVRRIFESLGYDVLKLDRVMYAGLTKKNIPRGSWRYLTATEVNKIK 559 >UniRef50_Q31GA0 Pseudouridine synthase n=2 Tax=Gammaproteobacteria RepID=Q31GA0_THICR Length = 317 Score = 244 bits (624), Expect = 2e-63, Method: Composition-based stats. Identities = 86/300 (28%), Positives = 146/300 (48%), Gaps = 17/300 (5%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIE--PR 62 + +L K ++ G SRRE ++ I QG V +NGK AT+GD+ P D +KVN QL++ Sbjct: 16 AGEKLQKILARGGFGSRREVEKLISQGLVKVNGKVATLGDRAFPTDTLKVNDQLVKETRL 75 Query: 63 EAEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNH--SKRVFPIGRLDKDSQGLIFLTNH 119 E + +I NKP G V + +D R+ I + + R +GRLD ++ GL+ LTN+ Sbjct: 76 EKQPTQVILYNKPEGQVCSRKDEKGRETIFTSLPRIINSRWISVGRLDINTSGLLILTNN 135 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTK-------KCKVKKE 172 G+L N+++ + E+EY V V +++E + + GV + K + + Sbjct: 136 GELANRLMHPSYEMEREYSVRVFGEVSDEILDRLKKGVKLEDGFAKFESIGKIPQQEEDS 195 Query: 173 APFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELID 231 +R+ + +G NR++RR+ E G +V +L RTR SL + G+ LT ++ Sbjct: 196 INQWYRVVIKEGRNREVRRIWESQGVQVSRLVRTRYGQFSLPRNLRRGKSEPLTWKQINQ 255 Query: 232 LFKLIENSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEK-GGRPASNGKRFTSPGRKKKGR 290 L K ++ P+ + A K+ + + +K GR K K K + Sbjct: 256 LLKSVDLPEE---PRPDLRNNPAKAKKMAARHAEPFKKETGRVKYKEKGENHREEKSKPK 312 >UniRef50_A5EVQ2 Pseudouridine synthase n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EVQ2_DICNV Length = 266 Score = 244 bits (623), Expect = 3e-63, Method: Composition-based stats. Identities = 73/261 (27%), Positives = 133/261 (50%), Gaps = 16/261 (6%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQL--IEP 61 D + R+ KY++ G+ SRR+ + +I++G + ++G+ A +G ++ + + ++G+ I Sbjct: 6 DDAQRIQKYLAARGVGSRRQIETWIKEGRLKVDGRVAELGQKISGNERLSLDGKPLRIAV 65 Query: 62 REAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSK--RVFPIGRLDKDSQGLIFLTN 118 +++ +KP G + T +D E R ++ + R IGRLD ++ GL+ TN Sbjct: 66 EHKNPHMILMYHKPAGEICTRKDPEGRVSVFQHLPKISHGRWVAIGRLDLNTSGLLLFTN 125 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTK-----KCKVKKEA 173 G L N+++ + E+EY V V +TEE + + G+P+ + + K E Sbjct: 126 DGALANQLMHPSAEIEREYWVRVAGEVTEEMLTALRQGIPLDDGLARFTEICPLKTLHED 185 Query: 174 PFV----FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDE 228 F +TL +G NR++RR+ E G +V +L+R R +SL + G R LT E Sbjct: 186 DTQFNRYFSVTLKEGRNREVRRLWEAVGCKVSRLKRIRYGTISLPPSLSAGRHRLLTAGE 245 Query: 229 LIDLFKLI-ENSSSEVKPKAK 248 L L+ E + + PK + Sbjct: 246 QASLISLVSEKNRRDNSPKPR 266 >UniRef50_Q8X4Q8 Ribosomal large subunit pseudouridine synthase B n=117 Tax=Bacteria RepID=RLUB_ECO57 Length = 290 Score = 244 bits (623), Expect = 3e-63, Method: Composition-based stats. Identities = 87/288 (30%), Positives = 148/288 (51%), Gaps = 18/288 (6%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQV--KPGDVVKVNGQLIEPRE 63 S +L K ++ +G SRRE + IE G V ++GK A +GD+V PG ++++G LI RE Sbjct: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 Query: 64 AEDLV--LIALNKPVGIVSTTEDGE-RDNIVDFVNHSK--RVFPIGRLDKDSQGLIFLTN 118 + + + ++A KP G + T D E R + D + + R +GRLD ++ GL+ T Sbjct: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK----KEAP 174 G+L N+++ + E+EY V V + + +R +S GV + +K + Sbjct: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 Query: 175 FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDELIDLF 233 + +TL +G NR++RR+ E G +V +L R R ++ L G+P G W +L + L Sbjct: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 Query: 234 KLI----ENSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNG 277 +L+ E SS K + + K I+R V + + + GGR + Sbjct: 242 ELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVS--GGRRSGGR 287 >UniRef50_Q4AAG8 Pseudouridine synthase n=6 Tax=Mycoplasma RepID=Q4AAG8_MYCHJ Length = 240 Score = 244 bits (623), Expect = 3e-63, Method: Composition-based stats. Identities = 77/237 (32%), Positives = 137/237 (57%), Gaps = 3/237 (1%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAE 65 +R+NK++SE G+CSRR++++ I QG + +N + A IG + DV++++ Q I + Sbjct: 3 KIRINKFLSEMGVCSRRQSEKLILQGRIKINNETAKIGQIISQNDVIELDQQKIT--KKP 60 Query: 66 DLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVN 124 + ALNKP +++ D E R I++F + ++ +FP+GRLD + GLI +TN G N Sbjct: 61 PIFWYALNKPKNYITSRFDPENRPTIMEFFSKNEYLFPVGRLDFQTTGLILITNDGKTTN 120 Query: 125 KILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQG 184 K+L + E+ YLV D ++++ IR ++ L +V K+KK + + +T+ QG Sbjct: 121 KLLHPSSKIERTYLVKTDFSLSDKEIRFLNDNKIQLDSVKSIQKIKKCSSRTYLVTVWQG 180 Query: 185 LNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSSS 241 N I+++ +V KL+R N+ L I G++R LT+ E+ L ++N++ Sbjct: 181 SNHHIKKLFLSISKKVLKLKRVSFANIKLDNISEGKYRKLTNQEIKSLENQVKNTTR 237 >UniRef50_C8QZD4 Pseudouridine synthase n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QZD4_9DELT Length = 240 Score = 243 bits (622), Expect = 4e-63, Method: Composition-based stats. Identities = 70/237 (29%), Positives = 122/237 (51%), Gaps = 10/237 (4%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPG-DVVKVNGQLIEPRE 63 + RL K+++ +GI SRR+A+ YI QG V ++G+ +G + P V +GQ + P Sbjct: 2 AERLQKFLARAGIASRRKAEEYIAQGRVQVDGRPVAQMGLTIDPERQQVTFDGQPVLP-- 59 Query: 64 AEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHS-KRVFPIGRLDKDSQGLIFLTNHGD 121 + + LNKP G V+T D + R + +N R+FP+GRLD D++G + LTN G+ Sbjct: 60 PSRKLTVLLNKPAGYVTTMADPQGRPIVTSLINEPGLRLFPVGRLDLDTEGALLLTNDGE 119 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKK----EAPFVF 177 L IL + Y TV E ++ + G+ + G T ++++ + Sbjct: 120 LAQNILHPSRQINRTYHATVKGRPNREALQQLRRGIMLEGRRTWPARIRELRRNQESTTL 179 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFK 234 + + +G RQ+R+M + V +L+R + L +P G +R L+ ++L LF+ Sbjct: 180 EVIIHEGRKRQVRKMFAAINHPVLQLKRVAYGGLRLGSLPTGRYRRLSPEDLQLLFR 236 >UniRef50_C6X4T2 Pseudouridine synthase n=2 Tax=Flavobacteriaceae RepID=C6X4T2_FLAB3 Length = 371 Score = 243 bits (622), Expect = 4e-63, Method: Composition-based stats. Identities = 90/241 (37%), Positives = 136/241 (56%), Gaps = 10/241 (4%) Query: 2 LPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIE 60 +P ++RLNKYI+ SGICSRREAD I QG V +NG T +G QV+ D V +GQ I Sbjct: 134 VPKETIRLNKYIANSGICSRREADELITQGLVQVNGAVVTEMGYQVQKTDKVIFDGQGIT 193 Query: 61 PREAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH--SKRVFPIGRLDKDSQGLIFLT 117 P E V + LNKP G +STT+D + R ++D V + RVFP+GRLD+ + G+I LT Sbjct: 194 P---EKPVYVLLNKPKGYISTTKDEKARKTVMDLVANASPYRVFPVGRLDRSTTGVILLT 250 Query: 118 NHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTK---KCKVKKEAP 174 N G + K+ + +K Y VT+D+ + + ++ GV + V + ++ + Sbjct: 251 NDGHMTKKLTHPSFNMKKIYHVTLDRKLDRADLNAIAEGVRLEEGVAEVDSISYIEGKPK 310 Query: 175 FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFK 234 I + G NR +RR+ + GYEV+ L+R ++ I G WR LT+ E+ +L Sbjct: 311 NEVGIEIHIGWNRVVRRIFQRLGYEVEALDRVMFAGLTKKNIKRGHWRILTELEVNNLKM 370 Query: 235 L 235 + Sbjct: 371 M 371 >UniRef50_A8S8D3 Pseudouridine synthase n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8S8D3_9FIRM Length = 233 Score = 243 bits (622), Expect = 4e-63, Method: Composition-based stats. Identities = 84/236 (35%), Positives = 129/236 (54%), Gaps = 11/236 (4%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGD-QVKPGDVVKVNGQLIEPREAE 65 +RL+KY++E+ C+R EA + +G V +NG GD Q+K D V V+G L+ + Sbjct: 1 MRLDKYLAETAQCTRSEAKTMLAKGRVQVNGAVCKKGDTQLKDTDTVAVDGALLTY---Q 57 Query: 66 DLVLIALNKPVGIVSTTEDGERDNIVDFVNHS---KRVFPIGRLDKDSQGLIFLTNHGDL 122 V + LNKP G+VS + D +VD V + + +FP GRLDK S G + LT+ G Sbjct: 58 KFVYLMLNKPEGVVSASTDKRDTTVVDLVGDAYPRRELFPAGRLDKTSTGFVLLTDDGGF 117 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI-LGTVTKKCKVKKEAP--FVFRI 179 + IL + K Y VT+D P+T+E G +AGV + GT +V +P R+ Sbjct: 118 AHDILSPRHHVSKTYTVTIDTPLTQEMCTGFAAGVTLADGTALSPAEVTALSPDGLTVRV 177 Query: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSG-IPLGEWRDLTDDELIDLFK 234 L QG+ QI+RM +G V L R I ++L + G+WR+L+D+E+ + + Sbjct: 178 VLRQGVYHQIKRMFGVYGAGVNALHREAIGGLALDAQLAPGQWRELSDEEVAKITR 233 >UniRef50_A9KNY1 Pseudouridine synthase n=3 Tax=Firmicutes RepID=A9KNY1_CLOPH Length = 240 Score = 243 bits (621), Expect = 5e-63, Method: Composition-based stats. Identities = 74/237 (31%), Positives = 132/237 (55%), Gaps = 9/237 (3%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIG-DQVKP-GDVVKVNGQLIEP 61 +S +RL+KY+++ + +R E + I +G V +NG T +V D + V+ + + Sbjct: 5 NSMLRLDKYLADLSVGTRTEVKQMIRKGRVMVNGNTETSPETKVDSNHDKIFVDSRELSY 64 Query: 62 REAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKR--VFPIGRLDKDSQGLIFLTNH 119 E LNKP G+VS + D ++ +VD ++ +KR +FP+GRLDKD++GL+ +TN Sbjct: 65 VTLE---YFMLNKPAGVVSASNDKKQTTVVDLIDEAKRKDLFPVGRLDKDTEGLLIITND 121 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTK-KCKVKKEAPFVFR 178 GDL +++L +K Y + P+ +E +AG+ I T K+++ + Sbjct: 122 GDLAHQLLSPKKHVDKVYFAKLRDPLKKEDEEAFAAGLKIDEEFTALPAKLERISEQEAY 181 Query: 179 ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSG-IPLGEWRDLTDDELIDLFK 234 +T+ +G QI+RM E EV L+R + ++ L + LGE+R+LT++E+ L + Sbjct: 182 VTIREGKFHQIKRMFEATRNEVIYLKRISMGSLVLDESLSLGEYRELTEEEIEALRE 238 >UniRef50_A3ZQL4 Pseudouridine synthase n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZQL4_9PLAN Length = 517 Score = 243 bits (621), Expect = 6e-63, Method: Composition-based stats. Identities = 86/295 (29%), Positives = 140/295 (47%), Gaps = 15/295 (5%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKP-GDVVKVNGQLIE 60 P RL+K ++ +GI SRR+ + I++G V ++GK T +G +V P + V+GQ ++ Sbjct: 13 PLRLERLHKVLAFAGIDSRRKCEALIQEGRVEVDGKFVTELGMKVDPEHQEILVDGQRLK 72 Query: 61 PREAEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNH 119 V LNKP G++ST D R ++D V R+F IGRLD+ S+GLI +TN Sbjct: 73 FG---KRVYYMLNKPPGVLSTNFDPAGRTRVIDMVPQDVRLFTIGRLDRASEGLIVVTND 129 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKV----KKEAPF 175 G+L N++ + EK Y V V + I + GV + + V K + Sbjct: 130 GELANRLAHPRYEIEKTYRVEVAGHPEPDAITFVRRGVHLAEGFVQPVSVVMKRKNKQST 189 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 + L +G NR+IRR+ G++V +L+R + + L +P G +R+L E L Sbjct: 190 TLEVILDEGKNREIRRLMAKIGHKVLRLKRIAMGPLRLGEMPEGAFRELKSAETKALRDA 249 Query: 236 IENSSSEVKPKAKAKPKTAGIKR-----PVVKMEKTAEKGGRPASNGKRFTSPGR 285 + K K + + +R P K G +P G + + G+ Sbjct: 250 AFGVGAGKPKKPKPRKSSTPGEREGPIFPETKTIAKGRAGAKPTETGAKSRATGK 304 >UniRef50_A6C4P7 Pseudouridine synthase n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C4P7_9PLAN Length = 352 Score = 243 bits (620), Expect = 6e-63, Method: Composition-based stats. Identities = 94/303 (31%), Positives = 146/303 (48%), Gaps = 26/303 (8%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEPREA 64 +RL K+++ +G+ SRR + YIE G V ++G T +G ++ P ++V+G+ + Sbjct: 23 IRLQKFLAATGLGSRRHCEEYIETGRVSVDGDVITELGAKIDPETQFIEVDGERVRL--- 79 Query: 65 EDLVLIALNKPVGIVSTTEDG-ERDNIVDFVN-HSKRVFPIGRLDKDSQGLIFLTNHGDL 122 + LNKP G + T D R +VD +R+F +GRLD++S+GLI +TN G+L Sbjct: 80 QPRRYYLLNKPSGFLCTNNDPAGRRRVVDLFPNDGQRLFTVGRLDENSEGLILVTNDGEL 139 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK----KEAPFVFR 178 ++ + Y V V E + + GV V + +K + Sbjct: 140 AQRLAHPRYRVARTYHVQVVGNPPREKLDELRKGVRFKEGVFRVSGLKYLKKQGKSAFLE 199 Query: 179 ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIEN 238 +TL +G NR+IRRM G++V +L R R ++L + GE R L+D EL L +L+ Sbjct: 200 LTLHEGQNREIRRMMARIGHKVIQLVRIRFGPLNLGKLKTGESRRLSDTELKKLRQLLNE 259 Query: 239 SSSEV----KPKAKAKP-KTAGIKRPVVKM--EKTAEKG--------GRPASNGKRFTSP 283 S K K A P KT ++ V K E+ A G G + GKR S Sbjct: 260 KHSPDIRHRKGKKNAAPAKTRAPRKSVGKRSGERGAAAGKSVSERISGGKKTGGKRSVST 319 Query: 284 GRK 286 GRK Sbjct: 320 GRK 322 >UniRef50_Q2NIZ3 Pseudouridine synthase n=5 Tax=Candidatus Phytoplasma RepID=Q2NIZ3_AYWBP Length = 245 Score = 243 bits (620), Expect = 7e-63, Method: Composition-based stats. Identities = 67/240 (27%), Positives = 122/240 (50%), Gaps = 15/240 (6%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEPREAED 66 RL K ++ + + SRR+A+ I + + +NGK +G +V D++ ++ + I Sbjct: 3 RLQKVLAYANVASRRKAEILILEKRIKVNGKIISELGTKVSSSDIITLDDKPIT---KAT 59 Query: 67 LVLIALNKPVGIVSTTEDGE-RDNIVDFVNHS--KRVFPIGRLDKDSQGLIFLTNHGDLV 123 LNKP G +ST +D + R ++D + + +R++PIGRLD ++ GL+ +TN GDL Sbjct: 60 YSYFLLNKPNGFLSTAKDKKNRPTVLDLIEEASIQRLYPIGRLDFNTTGLLLITNDGDLT 119 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCK--------VKKEAPF 175 K+ KEY V ++ + ++ + G+ I CK + Sbjct: 120 QKLTHPSFCIPKEYHVKINACLQKKDLSTFCKGIIIDKKYLAVCKEIDILKISYMPKPST 179 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 ++ + +G NRQ+R+M + GY+V KL+R R +++ + +G +R L E+ L L Sbjct: 180 WLKLVITEGKNRQVRKMMQALGYQVLKLKRYRYSFLTIENLTIGAYRPLKIHEIKKLKTL 239 >UniRef50_C1F236 Pseudouridine synthase n=8 Tax=Bacteria RepID=C1F236_ACIC5 Length = 406 Score = 243 bits (620), Expect = 7e-63, Method: Composition-based stats. Identities = 91/282 (32%), Positives = 144/282 (51%), Gaps = 21/282 (7%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKP-GDVVKVNGQLIE 60 P RL K ++ +G+ SRR+A+ I G V +NG+ T +G + D ++V+G+L++ Sbjct: 20 PRGGERLQKILASAGVASRRKAEELILAGRVQVNGQVVTEMGFKADAASDHIRVDGKLLQ 79 Query: 61 PREAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFV----NHSKRVFPIGRLDKDSQGLIF 115 E L LNKP G V+T D E R +++F +R++P+GRLD S+GL+ Sbjct: 80 --GPEKLRYFMLNKPKGYVTTVSDPEGRHTVMEFFHGRGKGGERLYPVGRLDYASEGLLL 137 Query: 116 LTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGT-------VTKKC- 167 +TN G L N + +A + EK YLV V TEE + + AG+ I +T Sbjct: 138 MTNDGALANTLTKASSHVEKVYLVKVSGRPTEEQLEQIRAGIMIDRGRPGEGRVMTAPAG 197 Query: 168 --KVKKEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLT 225 V+ F +TL++G NR+IR+M E G+ V+K+ R + L + GE R+L Sbjct: 198 VRMVRDAENPWFELTLIEGRNREIRKMFEETGHFVEKIRRIGYGPLVL-DVEPGEVRELN 256 Query: 226 DDELIDLFKLIENSSSEVKPKAKAKPKTAGIKRPVVKMEKTA 267 +E+ L + + + KPKA K K + K+A Sbjct: 257 PEEVDSLRRAAQRKRAP-KPKAATKTKRLTMLPKAKPARKSA 297 >UniRef50_D2R7V9 Pseudouridine synthase n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R7V9_9PLAN Length = 811 Score = 243 bits (620), Expect = 7e-63, Method: Composition-based stats. Identities = 83/271 (30%), Positives = 133/271 (49%), Gaps = 10/271 (3%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKP-GDVVKVNGQLIEPRE 63 + RL K ++ +GI SRR+ + I +G V ++GK T +G +V P ++V+G+ + Sbjct: 33 AERLQKVLAAAGIGSRRDCEELITEGRVDVDGKVVTELGTRVDPVKQTIRVDGEALR--- 89 Query: 64 AEDLVLIALNKPVGIVSTTED-GERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDL 122 + +NKP G+V+T D R ++D V +RVF +GRLD+ S+GLI +TN G+ Sbjct: 90 KPQRLYFVVNKPEGVVTTNYDQAGRTRVIDLVPTDERVFAVGRLDRASEGLIIVTNDGEF 149 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTK----KCKVKKEAPFVFR 178 N++ K YLV V + + + G+ + K + K + + Sbjct: 150 ANRVTHPRYGVTKTYLVRVAGEASTAELAKLRRGIHLSDGFCKVDAIQVKRRHKQSTDMV 209 Query: 179 ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIEN 238 I L +G NR+IRR+ G++V KL+R + ++ L +PLG WR L E+ L Sbjct: 210 IQLSEGKNREIRRILARIGHKVLKLKRLAVGSLKLGELPLGAWRWLDKQEIERLLSEARL 269 Query: 239 SSSEVKPKAKAKPKTAGIKRPVVKMEKTAEK 269 E K A TA K K K+A Sbjct: 270 RRKENKKGKSATATTADGKAAPKKPAKSAGA 300 >UniRef50_A4CJ52 Pseudouridine synthase n=5 Tax=cellular organisms RepID=A4CJ52_9FLAO Length = 303 Score = 242 bits (619), Expect = 9e-63, Method: Composition-based stats. Identities = 82/234 (35%), Positives = 133/234 (56%), Gaps = 10/234 (4%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREAE 65 +RLNKYI+ +GICSRREAD YI GNV +NGK T +G +V+P D V+ +G+L++ E Sbjct: 70 IRLNKYIANAGICSRREADTYIAAGNVTVNGKTITEMGYKVQPTDEVRFDGRLLQRERKE 129 Query: 66 DLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHSK--RVFPIGRLDKDSQGLIFLTNHGDL 122 + LNKP ++TT D R +++ ++ + R+ P+GRLD+++ GL+ TN G+L Sbjct: 130 ---YVLLNKPRNFITTTRDEKGRRTVMELISRASNARLVPVGRLDRNTTGLLLFTNDGEL 186 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCK---VKKEAPFVFRI 179 K+ + K Y V +DK + + G+ + + + + + + Sbjct: 187 AKKLTHPKHGVRKIYHVELDKTFKSADLGKLREGLELEDGRIEVDEASYIDGASKKEVGV 246 Query: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF 233 L G NR +RR+ EH GY+V KL+R + ++ +P G WR LT+ E+I+L Sbjct: 247 ELHSGRNRIVRRIFEHLGYQVVKLDRVVLAGLTKKDLPRGHWRHLTEQEVINLR 300 >UniRef50_Q87NB7 Ribosomal large subunit pseudouridine synthase B n=17 Tax=Bacteria RepID=RLUB_VIBPA Length = 312 Score = 242 bits (618), Expect = 1e-62, Method: Composition-based stats. Identities = 81/305 (26%), Positives = 153/305 (50%), Gaps = 26/305 (8%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQV-KPGDVVKVNGQLIEPREA 64 S +L K ++ +G SRRE + I+ G V +NG A +G+++ VV+++G ++ + Sbjct: 2 SEKLQKVLARAGHGSRREIESLIKSGRVSVNGVVAKLGERLEDESSVVRIDGHIVSAKVQ 61 Query: 65 EDLV--LIALNKPVGIVSTTEDGE-RDNIVDFVN--HSKRVFPIGRLDKDSQGLIFLTNH 119 E+++ ++A KP G + T D E R + D + R +GRLD ++ GL+ T Sbjct: 62 EEVICRVLAYYKPEGELCTRHDPEGRRTVFDRLPKIRGSRWISVGRLDANTSGLLLFTTD 121 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA----PF 175 G+L N+++ E+EYLV V +TE+ +R + GV + + + V Sbjct: 122 GELANRLMHPSRQVEREYLVRVFGEVTEQKVRNLVKGVELEDGLARFEDVVYAGGEGMNH 181 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDLFK 234 F + + +G NR++RR+ E V +L+R R ++ L +P G W +L E+ L + Sbjct: 182 TFYVVINEGRNREVRRLWESQECTVSRLKRVRYGDIFLDKKLPRGGWMELDLKEVNYLRE 241 Query: 235 LIE---------NSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGR 285 L+E + S + + + + ++ I+R V + E+ R +++ R +P R Sbjct: 242 LVELRPEKETMLDLSKDNTSRKRERARSQKIRRAVKRHEE------RVSTSKGRSNNPAR 295 Query: 286 KKKGR 290 +K + Sbjct: 296 RKPKK 300 >UniRef50_B9MRL6 Pseudouridine synthase n=2 Tax=Clostridia RepID=B9MRL6_ANATD Length = 233 Score = 242 bits (618), Expect = 1e-62, Method: Composition-based stats. Identities = 61/229 (26%), Positives = 121/229 (52%), Gaps = 10/229 (4%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGK-RATIGDQVKPG-DVVKVNGQLIEPREA 64 +RL+K+++ G SR + + I +G V +NGK + ++ P D+++V+G++ + + Sbjct: 1 MRLDKFLTHCGFGSRSQVKKLIREGIVTVNGKQIVEVDFKINPEEDIIEVDGRVAKFSKQ 60 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNHS---KRVFPIGRLDKDSQGLIFLTNHGD 121 + I +NKP G V + E+ + ++ + + +GRLDKD++GL+ +T+ G+ Sbjct: 61 ---IYIMMNKPKGYVCSNEELASLTVFSLISDDLKYRDLHTVGRLDKDAEGLLIITDDGE 117 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGT-VTKKCKVKKEAPFVFRIT 180 ++++ EKEYLV ++K + EE + G+ + T K ++ Sbjct: 118 YTHRVISPKKRIEKEYLVRLEKEVDEEKLNEFENGIILDDGYKTLPAKYTIIDSTTVKLC 177 Query: 181 LVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDE 228 + +G Q++RM E G +V L+R RI ++L + GE+R + +E Sbjct: 178 IYEGKYHQVKRMFEAIGNKVVDLKRLRIGGLNLDQSLKPGEYRVMKVEE 226 >UniRef50_Q1D5Q2 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q1D5Q2_MYXXD Length = 745 Score = 242 bits (617), Expect = 1e-62, Method: Composition-based stats. Identities = 79/272 (29%), Positives = 132/272 (48%), Gaps = 19/272 (6%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEPR 62 ++ RL KY++ +G+ SRR A+ I G V +N K T +G +V+PG D+V V+G L+ P Sbjct: 2 AAERLQKYLARAGVASRRHAEELITAGRVAVNNKTVTELGSRVEPGTDLVTVDGTLVTP- 60 Query: 63 EAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHS-KRVFPIGRLDKDSQGLIFLTNHG 120 ++ L KPVG+V+T D + R + ++V + KR+FP+GRLD D++G + T+ G Sbjct: 61 -PDESSYFLLYKPVGVVTTLSDPQGRPTVANYVEETGKRLFPVGRLDYDAEGALLFTDDG 119 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKK----EAPFV 176 L +K+ + YL V + + GV + + V E Sbjct: 120 ALAHKLTHPSFQVPRTYLAKVKGAPDTATLDKLRGGVRLEDGMATPVSVSVFEAAERNTW 179 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLI 236 +I + +G I+R+C G+ V +L R V + G+ GE R L E+ +L + Sbjct: 180 LKIVVAEGRPHLIKRLCAAVGHPVVRLFRPSYAGVGVEGLRPGELRPLKTSEV-ELLNAV 238 Query: 237 ENSSSEVKPKAKAKPKTAGIKRPVVKMEKTAE 268 + KA P T ++ P + + A Sbjct: 239 SD--------GKAAPPTGELRLPPRRHGRAAP 262 >UniRef50_P45104 Ribosomal large subunit pseudouridine synthase B n=177 Tax=Gammaproteobacteria RepID=RLUB_HAEIN Length = 357 Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats. Identities = 75/284 (26%), Positives = 141/284 (49%), Gaps = 16/284 (5%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVK--PGDVVKVNGQLIEPR 62 +L K ++ +G SRRE + I G V + GK AT+GD++ G V+++GQ+I Sbjct: 74 EGEKLQKVLARAGQGSRREIETMIAAGRVSVEGKIATLGDRIDVHSGVKVRIDGQIINLS 133 Query: 63 EAEDLV--LIALNKPVGIVSTTEDGE-RDNIVDFVNH--SKRVFPIGRLDKDSQGLIFLT 117 + + ++ KP G + T D E R + D + R +GRLD ++ GL+ T Sbjct: 134 HTQKEICRVLMYYKPEGELCTRSDPEGRATVFDRLPRLTGSRWIAVGRLDINTSGLLLFT 193 Query: 118 NHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK----KEA 173 G+L N+++ + E+EY V V + + + + GV + + ++K Sbjct: 194 TDGELANRLMHPSREVEREYSVRVFGQVDDAMLARLRKGVQLEDGLANFKEIKFTGGVGI 253 Query: 174 PFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDELIDL 232 + +TL++G NR++RR+ E G +V +L R R N+ L G+P G W ++ + + L Sbjct: 254 NQWYDVTLMEGRNREVRRLWESQGIQVSRLIRIRYGNIKLMKGLPRGGWEEMDLENVNYL 313 Query: 233 FKLI----ENSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGR 272 +L+ E + +A +PK+ I++ V + + ++ + Sbjct: 314 RELVGLPAETETKLDVKQASRRPKSGQIRKAVKRYSEMNKRYKK 357 >UniRef50_Q1LLR3 Pseudouridine synthase n=15 Tax=Proteobacteria RepID=Q1LLR3_RALME Length = 631 Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats. Identities = 77/293 (26%), Positives = 136/293 (46%), Gaps = 13/293 (4%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPR- 62 D + +L+K ++E G+ SRRE + I QG V +NG A IG ++ P D V+VNG+LI + Sbjct: 232 DDAPKLHKVLAEGGLGSRREMEELILQGRVSVNGLPAHIGQRILPTDQVRVNGKLIHRKV 291 Query: 63 EAEDLVLIALNKPVG-IVSTTEDGERDNIVDFVNHSK--RVFPIGRLDKDSQGLIFLTNH 119 + ++ +KP G IVS ++ R + D + K + +GRLD +++GL+ T Sbjct: 292 TTKPPRVLLYHKPSGEIVSQSDPEGRPTVFDSLPRIKNGKWVAVGRLDFNTEGLLIFTTS 351 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA----PF 175 GD+ N+ + E+EY V + E + + G+ + ++ Sbjct: 352 GDIANRFMHPRYGVEREYAVRTLGELAEADRQRLLHGIQLDDGEANFLRIADGGGEGVNQ 411 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDLFK 234 + + L +G NR++RRM E G V +L RTR L G+ G W++L ++ L Sbjct: 412 WYHVALTEGRNREVRRMFEAVGLTVSRLIRTRYGQFLLPRGLKRGRWQELDPTDVRGLMA 471 Query: 235 LIENSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKK 287 I + P +A+ G+ + + ++ + P +K Sbjct: 472 NIGLKA----PSKEAQSGGKGVTKVGGRKQREEAALAGMPMHTGMDGLPRYEK 520 >UniRef50_A0L6G3 Pseudouridine synthase n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L6G3_MAGSM Length = 332 Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats. Identities = 82/258 (31%), Positives = 137/258 (53%), Gaps = 16/258 (6%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPRE 63 + RL K+++E G+CSRRE + +I++G V +NG+ T +G +V D V V+GQL+ P+ Sbjct: 68 EAPRLQKWLAEQGLCSRREGEVWIQEGRVSINGEVVTELGVKVAKRDRVAVDGQLVTPQR 127 Query: 64 AEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH--SKRVFPIGRLDKDSQGLIFLTNHG 120 + D I L+KP I+ T D + R I D + + S R+ +GRLD +S+GLI LT+ G Sbjct: 128 SRDTA-IILHKPKSIICTRSDPQGRRTIFDLIENHGSSRLITVGRLDINSEGLIILTSDG 186 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSA-GVPILGTVTKKCKV------KKEA 173 L + ++ + + Y V + + + GV + T ++ ++ Sbjct: 187 QLAHGLMHPSREVPRVYRVKTHGILLASQLEQIRTVGVRLEDGPTGPLEIVLDRGREQGN 246 Query: 174 PFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF 233 + ITL +G NR++RR+ +HFG +V +L R +SL + G WR +T DE L Sbjct: 247 NSWYTITLREGRNREVRRIFDHFGLQVARLLRVGYGGISLGNLEPGAWRPVTVDEWNMLQ 306 Query: 234 KL----IENSSSEVKPKA 247 K+ I S++ P+ Sbjct: 307 KISKRPIPGESAQAIPER 324 >UniRef50_UPI0001BC345F ribosomal large subunit pseudouridine synthase F n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=UPI0001BC345F Length = 240 Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats. Identities = 102/240 (42%), Positives = 152/240 (63%), Gaps = 8/240 (3%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREA 64 +R+NKYIS+SG+CSRR AD+ I +G+V +NG A G +V D+V+++ +I Sbjct: 2 EEIRINKYISKSGVCSRRAADKLINEGHVTINGVVAETGSKVTEKDIVRIDDDIINLI-- 59 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVN 124 +D+ + A KPVG +S+ D + I F+ +FP+GRLDKDS+GL+ +TN G+L+N Sbjct: 60 KDIKVYAFYKPVGYISSLSDEQGTGIASFLPQGMGLFPVGRLDKDSEGLMLITNDGNLMN 119 Query: 125 KILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGT------VTKKCKVKKEAPFVFR 178 +IL A N HEKEY+VT + +F+ M+ GVPI +T CK + F+ Sbjct: 120 EILNASNGHEKEYIVTTRQKFNNDFLVKMAKGVPITNRATGKKIITAPCKTEALEDNSFK 179 Query: 179 ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIEN 238 IT++QGLNRQIRRMC +F +V L+R RIMN+ L + GE ++L+ ELI L +++E Sbjct: 180 ITIIQGLNRQIRRMCGYFDIDVVSLKRVRIMNIMLGNMRPGELKELSQSELIKLRRMLEK 239 >UniRef50_C3X1E1 Pseudouridine synthase n=2 Tax=Oxalobacter formigenes RepID=C3X1E1_OXAFO Length = 510 Score = 241 bits (615), Expect = 2e-62, Method: Composition-based stats. Identities = 81/299 (27%), Positives = 155/299 (51%), Gaps = 11/299 (3%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPR 62 D + +L+K ++++G+ SRR+ + I G V +NG+ A IG ++ P D V++NG+LI+ + Sbjct: 170 EDDAPKLHKVLADAGLGSRRDMEELIVAGRVSVNGEPAHIGQRILPTDQVRLNGKLIQRK 229 Query: 63 EAEDL-VLIALNKPVGIVSTTEDGE-RDNIVDFVN--HSKRVFPIGRLDKDSQGLIFLTN 118 A+ L ++ +KP G + + +D E R ++ D + + + +GRLD +++GL+ TN Sbjct: 230 IAKSLPRVLTYHKPAGEIVSRDDPEKRPSVFDRLPLLKNSKWLAVGRLDFNTEGLLLFTN 289 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA----P 174 GDL N+++ + E+EY V + E + + AGV + + + K+ Sbjct: 290 SGDLANRLMHPRYNIEREYAVRTLGELEEGMRQKLLAGVDLGDGIGQFSKIVDGGGEGVN 349 Query: 175 FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDLF 233 +R+T+ +G NR++RRM E G V +L RTR V LS + G W +L ++ + +L Sbjct: 350 KWYRVTIGEGRNREVRRMFEAVGLTVSRLIRTRYGAVVLSQSLKRGRWDELEENAVRNLL 409 Query: 234 KL--IENSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKGR 290 +L ++N + +G K + + + + ++ + G+K R Sbjct: 410 RLSGLDNKDDKKTQGKTRSRNASGQYPDFPKSQSLSIRELQLQGQHQKKSPGGQKGSPR 468 >UniRef50_C6BUF1 RNA-binding S4 domain protein n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BUF1_DESAD Length = 251 Score = 241 bits (615), Expect = 3e-62, Method: Composition-based stats. Identities = 86/246 (34%), Positives = 140/246 (56%), Gaps = 12/246 (4%) Query: 1 MLPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPG-DVVKVNGQL 58 M +++RLNKYI+ +GI SRR AD +++G V +NG+ A + G QV P D V+VNG+L Sbjct: 1 MTEKTTIRLNKYIASAGIASRRGADELVQKGKVKVNGELADSPGIQVDPDNDRVEVNGKL 60 Query: 59 IEPREAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH---SKRVFPIGRLDKDSQGLI 114 ++ E + I L+K + V+T +D + R ++D + ++RVFP+GRLD S+G++ Sbjct: 61 VQHDEKSKDLYILLHKTIETVTTAKDPQGRKTVLDLLPPDVINRRVFPVGRLDFYSEGML 120 Query: 115 FLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPIL--GTVTKKCKVKKE 172 LT G+L N++ K Y VT+ ++E+ + M G+ + G + K+K Sbjct: 121 LLTTDGELCNRMTHPKWHLPKIYHVTIRGKLSEKELSVMQNGMYLEDKGELLAPVKIKAI 180 Query: 173 AP----FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDE 228 + + + L QG+NRQIRRM F + +L+R R + L + G+WR+L+ E Sbjct: 181 SEVGETTKYEMELRQGINRQIRRMFGEFDKTILRLKRVRQGRIELGALKPGKWRELSAKE 240 Query: 229 LIDLFK 234 L L K Sbjct: 241 LTLLKK 246 >UniRef50_C8WGQ8 Pseudouridine synthase n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WGQ8_EGGLE Length = 282 Score = 240 bits (614), Expect = 4e-62, Method: Composition-based stats. Identities = 75/275 (27%), Positives = 122/275 (44%), Gaps = 42/275 (15%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKP-GDVVKVNGQLIEPRE 63 +RL K+++ +G SRR ++ + G V +NGK T +G +V P D V V+G ++ R Sbjct: 10 PMRLQKFLARAGAASRRGSENLMTAGRVTVNGKVVTELGSKVDPLVDEVAVDGAVV--RL 67 Query: 64 AEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVN--HSKRVFPIGRLDKDSQGLIFLTNHG 120 A+ V I L+KP G V+T D + R + + V +FPIGRLD D+ GL+ + G Sbjct: 68 ADGPVTIMLHKPAGFVTTMSDPQGRRTVAELVPTERYPGLFPIGRLDFDTTGLLLFSTDG 127 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAP------ 174 +L N +L + K YL V+ TE + + G+ + T+ V+ Sbjct: 128 ELGNGLLHPKHHVTKRYLACVEGRPTERDLALLRRGIELDDGPTQPADVRVVEGGAARHA 187 Query: 175 -----------------------------FVFRITLVQGLNRQIRRMCEHFGYEVKKLER 205 + R+ + +G RQ++RM G+ V L R Sbjct: 188 ERLLEIPAAVPPRSSKEYAAVCEGRATRRSIVRLGIREGRKRQVKRMLAAVGHPVLALHR 247 Query: 206 TRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSS 240 + L +P G WR L +E+ L + I + Sbjct: 248 DSFGPLELGDLPRGAWRALDAEEVAALHQAIGRAE 282 >UniRef50_A5TW76 Pseudouridine synthase n=11 Tax=Fusobacterium RepID=A5TW76_FUSNP Length = 226 Score = 240 bits (613), Expect = 5e-62, Method: Composition-based stats. Identities = 65/229 (28%), Positives = 124/229 (54%), Gaps = 8/229 (3%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNG-KRATIGDQVKPG-DVVKVNGQLIEPREA 64 +RL+K++ E GI SR+E + I + +NG + D + D+++ NG+ +E +E Sbjct: 1 MRLDKFLVECGIGSRKEVKKLISNDEITVNGFNDISAKDNIDENSDIIEYNGEKLEYKE- 59 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNH---SKRVFPIGRLDKDSQGLIFLTNHGD 121 +NK G ++ TED + + ++D + K + P+GRLDKD++GL+ TN G Sbjct: 60 --FRYYIMNKKAGYITATEDFKENTVMDLLPEWVIRKDLAPVGRLDKDTEGLLLFTNDGK 117 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITL 181 L +++L N +K Y + ++ I ++ I + GV I +T+ KV+K + +T+ Sbjct: 118 LNHRLLSPKNHIDKVYYIEIENNILDKDILKLEQGVDIGNYITQPAKVEKISDNKIYLTI 177 Query: 182 VQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELI 230 +G Q+++M E +V L+R + L + LGE +++ +++I Sbjct: 178 KEGKFHQVKKMLEAVNNKVCYLKRVSFGKLKLDDLALGEVKEVNLEDII 226 >UniRef50_A1WE21 Pseudouridine synthase n=1 Tax=Verminephrobacter eiseniae EF01-2 RepID=A1WE21_VEREI Length = 520 Score = 240 bits (612), Expect = 5e-62, Method: Composition-based stats. Identities = 76/295 (25%), Positives = 146/295 (49%), Gaps = 12/295 (4%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPR-E 63 + +L+K ++++G+ SR E ++ I +G + +N + A IG +++ GD VKVNG+ I R + Sbjct: 169 ETPKLHKVLAQAGLGSRLEMEQLILEGRISVNNEPAHIGQRIQFGDQVKVNGKPIRYRID 228 Query: 64 AEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH--SKRVFPIGRLDKDSQGLIFLTNHG 120 +IA +KPVG V + +D R + + + +GRLD +++GL+ LT+ G Sbjct: 229 PPPARVIAYHKPVGEVVSHDDPHNRPTVFRRLPRLVQGKWQSVGRLDLNTEGLLLLTSSG 288 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK----KEAPFV 176 +L N+++ E+EY V V ++ E + + GV + + ++ + A Sbjct: 289 ELANQLMHPRFGLEREYAVRVLGALSNEEKQKLLDGVRLDDGIASFGTIEDGGGEGANCW 348 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDLFKL 235 +R+T+ +G NR++RRM E G+ V +L R R + L G+ G W +L + ++ L + Sbjct: 349 YRVTIAEGRNREVRRMLEAVGHAVSRLIRIRYGAMVLPRGLKRGTWLELDERDIRALAQA 408 Query: 236 IENSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKGR 290 + + + P A + + G R + + + R + R Sbjct: 409 AGARAPALSTR---TPTDARAGKQRERSGPPMGNGPRRGRSPQGPAAGARAQNPR 460 >UniRef50_D2MQD6 Pseudouridylate synthase n=1 Tax=Bulleidia extructa W1219 RepID=D2MQD6_9FIRM Length = 231 Score = 240 bits (612), Expect = 6e-62, Method: Composition-based stats. Identities = 67/232 (28%), Positives = 123/232 (53%), Gaps = 6/232 (2%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPG-DVVKVNGQLIEPREA 64 +RL++ ++ + + SR + ++ G V +NGK A V P DV++++ ++++ + Sbjct: 1 MRLDRVLANASVGSRTQVKNMVKNGRVSVNGKIALASSMMVDPNQDVIRIDDEILQYAKY 60 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVN 124 + + L KP G +S TE +++ V + K +FP GRLDKD++GL+ +TN G L + Sbjct: 61 Q---YLMLYKPAGYISATEGRYDPTVLELVPNYKGLFPCGRLDKDTEGLLLMTNDGRLAH 117 Query: 125 KILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQG 184 +L EKEY V P+++E + + G+ K K+K I L +G Sbjct: 118 NLLSPKKHVEKEYYVEHQLPLSQEDVLCIERGIRYKNITYKGAKLKILDDLQCTIILQEG 177 Query: 185 LNRQIRRMCEHFGYEVKKLERTRIMNVSLSG-IPLGEWRDLTDDELIDLFKL 235 +I+ + +V L+R R+ N+ L + GE+R L+++E+ DL +L Sbjct: 178 KYHEIKNIFLAIDNKVTYLKRIRMKNLILDETLKKGEYRPLSEEEIGDLKQL 229 >UniRef50_C1ZE67 Pseudouridine synthase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZE67_PLALI Length = 554 Score = 239 bits (611), Expect = 7e-62, Method: Composition-based stats. Identities = 78/293 (26%), Positives = 133/293 (45%), Gaps = 16/293 (5%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVK-PGDVVKVNGQLIEPR 62 + RL K ++ +G SRR + YIE G V ++G A +G +V V V+G+ + Sbjct: 35 AGERLQKVLASAGYGSRRACEEYIEMGRVTIDGVVAKELGVRVDLSRQKVAVDGEKLR-- 92 Query: 63 EAEDLVLIALNKPVGIVSTTEDG-ERDNIVD-FVNHSKRVFPIGRLDKDSQGLIFLTNHG 120 E+ +KP G++ T D R ++D F + R+F +GRLD ++GL+ +TN G Sbjct: 93 -VEEKRYFLFHKPAGVLCTNSDPAGRTRVIDCFPPNVGRLFTVGRLDDGTEGLLIVTNDG 151 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKV----KKEAPFV 176 DL ++ + Y V + E I + G+ + V + + V Sbjct: 152 DLAERLTHPKFGIPRIYRAVVAGNPSTEAINQLLEGLYFAEGRFRMSSVNRVKSQGSATV 211 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLI 236 IT+ +G NR+IRR+ G++V KL+RT + L + G R L+++EL L +I Sbjct: 212 LEITMREGQNREIRRLLARVGHKVMKLKRTHFGPIKLGDLERGAHRKLSEEELSKLQDVI 271 Query: 237 ENSSSEVKPKAKAKPKTAGIKRPVVKMEKTA-----EKGGRPASNGKRFTSPG 284 E P+ + + AG + + + G P + +R P Sbjct: 272 TGKWKEPAPRKPQRTRDAGKATSAGGVTRASSSRAGSAGATPRARLERTALPA 324 >UniRef50_Q1MQ05 Pseudouridine synthase n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MQ05_LAWIP Length = 270 Score = 239 bits (611), Expect = 7e-62, Method: Composition-based stats. Identities = 80/247 (32%), Positives = 141/247 (57%), Gaps = 14/247 (5%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEPR 62 +S+R+NK ++ +G+CSRR D+YI G V +NGK T G + P D++ ++G+ ++ + Sbjct: 22 TSIRINKALANAGVCSRRNVDKYILNGEVTINGKSVTQPGIYIHPDKDIIALHGRRVDIQ 81 Query: 63 -EAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHS---KRVFPIGRLDKDSQGLIFLT 117 + + +++ KP+ ++S+ +D + R ++DF+ R++P+GRLD S+GL+ +T Sbjct: 82 LKNKKYYYLSMYKPIKVISSVKDPQNRLTVLDFIPFPWKNYRLYPVGRLDFFSEGLLLIT 141 Query: 118 NHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI-LGTVTKKCKVKKEAP-- 174 N G+L ++ K Y V + + I ++ +S G+ + GT KV+ + Sbjct: 142 NDGELTQRLTHPRYHISKVYHVLIRERILNTTLKNISKGITLSDGTKLPPAKVRVLSSIT 201 Query: 175 ----FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELI 230 ITL QG+NRQIRRMC+ G + KL R + N++LS + GE R L +DE+ Sbjct: 202 ETNTTWLEITLQQGINRQIRRMCKELGLTILKLIRVKQGNINLSNLQPGEVRPLKNDEIK 261 Query: 231 DLFKLIE 237 L K ++ Sbjct: 262 LLKKNVQ 268 >UniRef50_C7I043 Pseudouridine synthase n=4 Tax=Proteobacteria RepID=C7I043_THIIN Length = 562 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 70/257 (27%), Positives = 131/257 (50%), Gaps = 9/257 (3%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPR- 62 + + +L+K +++SG+ SRRE + I G V +NG+ A +G ++ P D ++VNG++I+ R Sbjct: 169 EDAPKLHKVLAQSGVGSRREMEDLILAGRVSVNGEPAHLGQRILPTDQIRVNGKIIKRRL 228 Query: 63 EAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSK--RVFPIGRLDKDSQGLIFLTNH 119 ++A +KP G V + +D E R + + + + +GRLD +++GL+ T Sbjct: 229 RPAQARVLAYHKPTGEVVSFKDPEGRPTVFQHLPKLQGAKWTAVGRLDINTEGLLLFTTS 288 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK----KEAPF 175 GDL N+++ E+EY V V + + GV + + ++ + A Sbjct: 289 GDLANRLMHPSYGAEREYAVRVLGELDAAARDELLEGVQLGDGPARFLSLEEAGGEGANR 348 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDELIDLFK 234 +R+ + +G NR++RRM E G V +L R R +V L +G+ G++ +L + L Sbjct: 349 WWRVVISEGRNREVRRMFEAVGLTVSRLIRVRYASVVLPAGLRRGDFVELDKSLVQALQG 408 Query: 235 LIENSSSEVKPKAKAKP 251 + S + +P Sbjct: 409 RSGEAPSGAGDRPARRP 425 >UniRef50_B1C6T1 Pseudouridine synthase n=2 Tax=Clostridiales RepID=B1C6T1_9FIRM Length = 238 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 82/239 (34%), Positives = 132/239 (55%), Gaps = 10/239 (4%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVK-PGDVVKVNGQLIEP 61 + +R+NKY++ G+ SRR+ + I +G V +NG+ +G + D+VKV G+ + Sbjct: 2 EEKMRINKYLASCGVASRRKCEEIISRGKVTVNGEVVRELGTIINVEKDLVKVYGKEVSL 61 Query: 62 REAEDLVLIALNKPVGIVSTTE-DGERDNIVDFVNHSK-RVFPIGRLDKDSQGLIFLTNH 119 + V LNKP G++S ++ + +VD + + R+FP+GRLDKD+ GLI LTN Sbjct: 62 DTKK--VYYMLNKPQGVISASKSKYGEETVVDLLGKKEHRLFPVGRLDKDTTGLIILTND 119 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA----PF 175 GD K+ + EK Y V + + + + GV I G T + KV+ Sbjct: 120 GDFAYKLTHPKYEKEKTYEALVKGKVDSKSLDKLKQGVVIDGKKTSRAKVRLVKMIGVNS 179 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFK 234 + ITL++G RQ+++MCE G++V KL RT +SL + +GE+R LT +E+ L K Sbjct: 180 LVEITLIEGRKRQVKKMCEKVGHKVIKLNRTMENGLSLGDLEIGEYRKLTKNEVSKLLK 238 >UniRef50_C7LZX4 Pseudouridine synthase n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LZX4_ACIFD Length = 254 Score = 238 bits (609), Expect = 1e-61, Method: Composition-based stats. Identities = 90/241 (37%), Positives = 129/241 (53%), Gaps = 4/241 (1%) Query: 2 LPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPG-DVVKVNGQLIE 60 + SV+++ ++ +G SRR + I G V +NG+ ATIG +V+PG D V+ +G I Sbjct: 1 MSAESVKVHVLLARAGCGSRRVLEDAIRDGRVRINGEVATIGARVRPGVDRVEFDGLEIA 60 Query: 61 PREAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNH 119 E + LNKP G+VS+ D E R + V + RV+P+GRLD DS+GL+ LTN Sbjct: 61 TEEQRE--YWLLNKPRGVVSSVVDPEGRPTVRSLVATTSRVYPVGRLDVDSEGLLILTND 118 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRI 179 G L ++ KEYLV VD+P+ R + GV + G + + V P + RI Sbjct: 119 GPLTYQLTHPRFHVPKEYLVWVDRPVPRRLGRELREGVEVDGELLRASSVGTVGPRLVRI 178 Query: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENS 239 L +G NRQIRRM G V++L R RI + +P G R L EL L + I + Sbjct: 179 VLTEGRNRQIRRMVGAVGLSVERLVRVRIGPLVDPHLPPGVARRLEPRELARLRRAIGAA 238 Query: 240 S 240 S Sbjct: 239 S 239 >UniRef50_B0S1L0 Pseudouridine synthase n=2 Tax=Finegoldia magna RepID=B0S1L0_FINM2 Length = 242 Score = 238 bits (609), Expect = 1e-61, Method: Composition-based stats. Identities = 82/234 (35%), Positives = 131/234 (55%), Gaps = 9/234 (3%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEPREAE 65 +R+NK+I++SG CSRR AD I+ V++NG + QV D+V+V G+ I + E Sbjct: 1 MRINKFIAQSGYCSRRNADELIKNSKVYVNGTILLDLSYQVNDTDIVEVEGKKINLK--E 58 Query: 66 DLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVN 124 D + IA+NKP+G ST +D +VD + RV+P+GRLDKDS GL+ LTN G+ Sbjct: 59 DKIYIAINKPIGYASTVKDKFADKKVVDLIKSDTRVYPVGRLDKDSHGLLILTNDGEFTY 118 Query: 125 KILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK----KEAPFVFRIT 180 ++ +H+K Y V V + I+ + G+ + G KK K++ + +R+T Sbjct: 119 ELTHPKFEHKKIYEVLVKGKPNKTEIKQLKDGILLDGYKLKKSKIEFIENVKNDTKYRVT 178 Query: 181 LVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSG-IPLGEWRDLTDDELIDLF 233 + +G NRQIRRM + + V L+R +I N + + GE++ L +L + Sbjct: 179 IFEGRNRQIRRMFDFINHPVLDLKRVQIGNYKMENSLKSGEYKLLKSKDLDLIR 232 >UniRef50_D0LG91 Pseudouridine synthase n=3 Tax=Bacteria RepID=D0LG91_HALO1 Length = 553 Score = 238 bits (609), Expect = 1e-61, Method: Composition-based stats. Identities = 87/251 (34%), Positives = 137/251 (54%), Gaps = 13/251 (5%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEP 61 D ++RL +Y+S+ G+ +RR+A+ I G V +NG+R T +G +V PG D V V G+ + P Sbjct: 2 DEAIRLQRYLSQCGVAARRKAEELITSGVVSVNGQRVTELGTKVVPGRDRVSVRGEAVYP 61 Query: 62 REAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTNH 119 E + LNKP G ++ D E R ++++++ RV P+GRLD S+G++ LTN Sbjct: 62 EEP---FYVLLNKPKGCLTAVTDPENRPTVMEYLHGLPARVVPVGRLDFYSEGVLLLTND 118 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI-LGTVTKKCKVKKEAPF--- 175 GDL ++ + EK Y V V +TE + + GV + GTVT+ ++ Sbjct: 119 GDLSARLQSPRHHVEKTYHVKVRDQVTERHLEVLRQGVRLEDGTVTRPAQIDMLGGTKSR 178 Query: 176 --VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF 233 ITL +G +RQI RM GY V KL+R ++ G+ +G+ R+LT E+ DL Sbjct: 179 HDWLVITLTEGKSRQIHRMLGVLGYTVMKLQRVAFGGLTFHGLRVGDARELTQAEVNDLR 238 Query: 234 KLIENSSSEVK 244 +L+ V Sbjct: 239 ELVGLPKDTVA 249 >UniRef50_D1PIW4 Pseudouridine synthase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIW4_9FIRM Length = 237 Score = 238 bits (609), Expect = 1e-61, Method: Composition-based stats. Identities = 86/236 (36%), Positives = 128/236 (54%), Gaps = 9/236 (3%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGD-QVKPGDVVKVNGQLIEPREAE 65 +RL+KY+SE +R E+ + I +G V +NG D QV + V+G + + Sbjct: 2 MRLDKYLSERTGLTRSESRKAITKGRVAVNGMVCRKADTQVAEDAAIAVDGTPLAGS-YQ 60 Query: 66 DLVLIALNKPVGIVSTTEDGERDNIVDFV--NHSKR-VFPIGRLDKDSQGLIFLTNHGDL 122 V I LNKP G+VS + D +VD V + +R +FP GRLDK S G + LT+ G L Sbjct: 61 KYVYIMLNKPEGVVSASRDKRDTTVVDLVAADFPRRALFPAGRLDKTSTGFVLLTDDGAL 120 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVT-KKCKVKK--EAPFVFRI 179 + +L + +K+YLVT+D P+T+ G +AGV + T + + E P V ++ Sbjct: 121 AHDLLSPAHHVDKQYLVTLDTPLTDAMRAGFAAGVTLADGETMAPAEAEPAGEDPCVVKV 180 Query: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDLFK 234 TL QG+ QI+RM +G V L R I V+L + G+WR+LT +EL L K Sbjct: 181 TLHQGVYHQIKRMFGVYGAGVNALHRYAIGGVALDAALAPGQWRELTAEELALLQK 236 >UniRef50_B0B8U9 Pseudouridine synthase n=10 Tax=Chlamydiales RepID=B0B8U9_CHLT2 Length = 241 Score = 238 bits (609), Expect = 1e-61, Method: Composition-based stats. Identities = 81/232 (34%), Positives = 131/232 (56%), Gaps = 8/232 (3%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEPR 62 + VRLNK+++ +G+ SRR+ D I G+V +NG+ AT V D V+V GQ I Sbjct: 2 AKVRLNKFLASAGVASRRKCDEIIFAGSVTVNGRVATGPFVTVDEEFDSVEVGGQRIG-- 59 Query: 63 EAEDLVLIALNKPVGIVSTTED--GERDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTNH 119 AE V ++KP+G + ++E ++D ++H R+F +GRLDK++ GLI +TN Sbjct: 60 -AEKKVYFMVHKPLGYLCSSERKFPGSKLVIDLLSHCPYRLFTVGRLDKETSGLILVTND 118 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRI 179 G+ N+++ KEYL+ V + +T + + AG I G V + VKK +I Sbjct: 119 GEFANRVIHPSFGITKEYLLKVSRDVTARDLETLMAGTVIDGKVVRPVSVKKVRRGTIKI 178 Query: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELID 231 + +G +IR E G ++ +L+R RI ++ L G+P G++R+LTD EL Sbjct: 179 IVNEGKKHEIRLFAEAAGLQLLELKRIRIGSLVLGGLPYGKYRELTDSELDS 230 >UniRef50_A0JV58 Pseudouridine synthase n=37 Tax=Actinobacteridae RepID=A0JV58_ARTS2 Length = 406 Score = 238 bits (608), Expect = 1e-61, Method: Composition-based stats. Identities = 77/241 (31%), Positives = 123/241 (51%), Gaps = 11/241 (4%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEPR 62 +RL K ++ +G+ SRR + I +G V ++GK T +G +V P V+ V+G I+ Sbjct: 166 DGIRLQKVMASAGVASRRVCEEMISEGRVEVDGKVVTELGVRVDPKTAVIHVDGLRIQLD 225 Query: 63 EAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVN--HSKRVFPIGRLDKDSQGLIFLTNH 119 E++V + NKP G+VST ED + R I DFV H +R+F +GRLD ++GL+ LTN Sbjct: 226 --ENMVYMVFNKPKGVVSTMEDPDGRPCISDFVRNTHGERLFHVGRLDVATEGLLLLTND 283 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPF---- 175 G+L N++ + K YLV V P + + AGV + + K Sbjct: 284 GELANRLTHPSYEVPKTYLVQVRGPFPQGIGAQLKAGVELEDGMASVDSFKLVDSTPGHV 343 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 + + L G NR +RR+ + G+ V +L R ++ + L G R+L E+ L Sbjct: 344 LIEVVLHSGKNRIVRRLFDAVGFPVLRLVRVKVGPIGLGDQRQGSIRNLGKQEVGHLLAS 403 Query: 236 I 236 + Sbjct: 404 V 404 >UniRef50_C8NNL7 Pseudouridine synthase n=8 Tax=Corynebacterium RepID=C8NNL7_COREF Length = 329 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 79/244 (32%), Positives = 127/244 (52%), Gaps = 13/244 (5%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATI-GDQVKPG-DVVKVNGQLIEPR 62 +RL K ++++G+ SRR A+ I+ G V +NG+ T G +V P DV++V+G I Sbjct: 87 EGIRLQKVLAQAGVASRRHAEILIDNGRVEVNGRIVTTQGTRVNPNSDVIRVDGVRINI- 145 Query: 63 EAEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHS----KRVFPIGRLDKDSQGLIFLT 117 EDL LNKP G+ ST D R + D V+ +R+F +GRLD D++GL+ LT Sbjct: 146 -NEDLEYFVLNKPRGMHSTMSDDLGRPCVGDLVSEKTASGQRLFHVGRLDADTEGLLLLT 204 Query: 118 NHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKK----EA 173 N G+L N+++ + K YL TV + + G+ + K V+ + Sbjct: 205 NDGELANRLMHPKYEVRKTYLATVRGEAGPNLVTTLRKGIELEDGPAKADYVQIIDTFQG 264 Query: 174 PFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF 233 + R+ + +G +RRM + G+ V++L RT++ V L G R L EL L+ Sbjct: 265 KSLIRLEIHEGRKHIVRRMLDEAGFPVERLVRTKLHTVQLGEQKPGSLRALNASELASLY 324 Query: 234 KLIE 237 K++E Sbjct: 325 KVVE 328 >UniRef50_C1DTU8 Pseudouridine synthase n=5 Tax=Bacteria RepID=C1DTU8_SULAA Length = 247 Score = 238 bits (607), Expect = 2e-61, Method: Composition-based stats. Identities = 82/237 (34%), Positives = 136/237 (57%), Gaps = 13/237 (5%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEPREAE 65 RLNKYI++SGICSRR+AD I +G V +NGK +G ++ P DVV+V G++++P E Sbjct: 3 RLNKYIAKSGICSRRKADELILEGKVKVNGKTVKNLGLKIDPKKDVVEVEGKIVKP--TE 60 Query: 66 DLVLIALNKPVGIVST--TEDGERDNIVDFVNH---SKRVFPIGRLDKDSQGLIFLTNHG 120 + +A+ KPVG +S + R + DF+N ++FP+GRLD +S+GL+ LTN G Sbjct: 61 KKIYLAIYKPVGYLSAVGKDRFGRKTLTDFLNELKIPYKLFPVGRLDYNSEGLLILTNDG 120 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK----KEAPFV 176 + NK+ N+ +K Y V V +++E ++ M G + K K+K +E Sbjct: 121 EFANKVAHPRNEIKKVYKVKVAGEVSQETLKKMEEGTILEDGFFKPDKIKMLKREEDGTW 180 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF 233 + + G R IRR + FG+ VK+L R +I ++ + + ++R L++ E+ + Sbjct: 181 LLVEIHSGKKRIIRRFMDSFGHRVKRLIRVKIGSIDIGNLKPFDYRYLSEKEIRSIL 237 >UniRef50_D0SB72 Pseudouridine synthase n=5 Tax=Acinetobacter RepID=D0SB72_ACIJO Length = 368 Score = 238 bits (607), Expect = 2e-61, Method: Composition-based stats. Identities = 78/309 (25%), Positives = 148/309 (47%), Gaps = 24/309 (7%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAE 65 S +L K ++ G+ SRR + I G V +NG+ A +G++++PGD ++++G+ + + + Sbjct: 2 SEKLQKVLARVGLGSRRYMEEVIAAGRVSVNGQVAQVGERIEPGDELRIDGRKVSFQIED 61 Query: 66 --DLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH--SKRVFPIGRLDKDSQGLIFLTNHG 120 ++ KP G + + D E R + D + + R +GRLD +S GL+ TN G Sbjct: 62 EIRRRVLIYYKPEGEICSRNDPESRPTVFDQLPAIANDRWVMVGRLDINSTGLLLFTNDG 121 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA----PFV 176 +L N+++ N+ E+EY V V +T + M GV + K + Sbjct: 122 ELANRLMHPSNEVEREYAVRVMGEVTPQIKNNMLKGVVLDDGPAKFESFSEIGGEGINRW 181 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDLFKL 235 +++ + +G NR++RR+ E G +V +L RTR V L + G W +L +++ +L K Sbjct: 182 YQVVVKEGRNREVRRIFESQGLKVSRLLRTRYGTVILPRELRTGRWMELDKNDIDNLTKA 241 Query: 236 IE--------------NSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFT 281 +E + ++ K A + +++ E ++ +PA N +R Sbjct: 242 VELKPRQGTGLYGMAKRRTERMQEKPMAARRGGFLRQQRRDNEDEGQQQAKPAFNRERRE 301 Query: 282 SPGRKKKGR 290 +P + R Sbjct: 302 NPNGHSQRR 310 >UniRef50_Q2NSN0 Pseudouridine synthase n=7 Tax=Gammaproteobacteria RepID=Q2NSN0_SODGM Length = 235 Score = 237 bits (606), Expect = 2e-61, Method: Composition-based stats. Identities = 67/230 (29%), Positives = 116/230 (50%), Gaps = 8/230 (3%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIG-DQVKPGDVVKVNGQLIEPREAE 65 +RL+K++S+ SR R + V ++G+ G Q++P V+ +G L+ Sbjct: 1 MRLDKFLSQQLGVSRALVARELRAKRVTVDGEIIKQGAFQLRPEHQVRFDGNLLHQILTA 60 Query: 66 DLVLIALNKPVGIVSTTEDGERDNIVDFVNHS--KRVFPIGRLDKDSQGLIFLTNHGDLV 123 LNKP G V +T+D + I+ F++ ++ GRLD D+ GL+ LT+ G Sbjct: 61 R--YFMLNKPQGYVCSTDDPDHPTILYFIDEPVPDKLHAAGRLDIDTTGLVLLTDDGQWS 118 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGT--VTKKCKVKKEAPFVFRITL 181 ++ + EK+YLVT+++P+ E +AG+ + G T+ ++ +P R+T+ Sbjct: 119 YRLTSPRHHCEKDYLVTLEQPLAAEITAQFAAGILLRGEKLPTRPARLATLSPLKVRLTI 178 Query: 182 VQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSG-IPLGEWRDLTDDELI 230 +G Q++RM G V L R RI + L + GE+R LT E+ Sbjct: 179 SEGRYHQVKRMFAAVGNRVVALHRERIGAIVLDAHLQPGEYRALTAGEVA 228 >UniRef50_D1AL84 Pseudouridine synthase n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AL84_SEBTE Length = 233 Score = 237 bits (606), Expect = 3e-61, Method: Composition-based stats. Identities = 72/235 (30%), Positives = 124/235 (52%), Gaps = 9/235 (3%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIG-DQVKPG-DVVKVNGQLIEPREA 64 +R++K+++ SGI +R+E +++ + +N + T + D V +G+ IE +E Sbjct: 1 MRIDKFLANSGIGTRKEVKELLKKKRISVNDEVVTEAKTHIDEDNDFVAFDGKRIEFKE- 59 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNHS---KRVFPIGRLDKDSQGLIFLTNHGD 121 + I LNKP ++S T+D ++D + +FP+GRLDKD++GL+ LTN G Sbjct: 60 --FLYIMLNKPQDVISATDDERHRTVLDLLEEPLTKVGLFPVGRLDKDTEGLLVLTNDGK 117 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITL 181 + +++L K Y V + K +++E + GV + TK KV+ I + Sbjct: 118 MAHELLSPKKHVPKRYYVELKKTLSKEEAAILENGVELETFTTKPAKVEFITEDKVYIII 177 Query: 182 VQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDLFKL 235 +G Q++RM + G V L+RT + N+ L + GE+R+LT DEL L L Sbjct: 178 SEGKYHQVKRMFKCVGNRVLFLKRTGMGNLGLDENLAPGEYRELTSDELEQLQGL 232 >UniRef50_A4QE19 Pseudouridine synthase n=13 Tax=Corynebacterineae RepID=A4QE19_CORGB Length = 320 Score = 237 bits (605), Expect = 3e-61, Method: Composition-based stats. Identities = 80/244 (32%), Positives = 128/244 (52%), Gaps = 13/244 (5%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATI-GDQVKPG-DVVKVNGQLIEPR 62 VRL K ++++G+ SRR A+ I+QG V +N + T G +V P DV++V+G I Sbjct: 78 DGVRLQKVLAQAGVASRRHAEILIDQGRVEVNDRIVTTQGVRVNPNNDVIRVDGVRIHI- 136 Query: 63 EAEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHS----KRVFPIGRLDKDSQGLIFLT 117 EDL LNKP G+ ST D R + D V+ +R+F +GRLD D++GL+ LT Sbjct: 137 -NEDLEYFVLNKPRGMHSTMSDELGRPCVGDLVSEKTASGQRLFHVGRLDADTEGLLLLT 195 Query: 118 NHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKK----EA 173 N G+L N+++ + K YL TV T + + + GV + K + + Sbjct: 196 NDGELANRLMHPKYEVSKTYLATVRGEATNKLVSALRDGVELEDGPAKADFAQIIDVFQG 255 Query: 174 PFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF 233 + RI + +G +RR+ + G+ V++L RT++ V L G R L EL L+ Sbjct: 256 KSLLRIEIHEGRKHIVRRLFDELGFPVERLVRTKLHTVQLGDQKPGSLRALNSSELTSLY 315 Query: 234 KLIE 237 K+++ Sbjct: 316 KVVQ 319 >UniRef50_D2RB61 Pseudouridylate synthase n=2 Tax=Gardnerella vaginalis RepID=D2RB61_GARVA Length = 284 Score = 237 bits (605), Expect = 4e-61, Method: Composition-based stats. Identities = 76/242 (31%), Positives = 128/242 (52%), Gaps = 11/242 (4%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEP 61 ++++RL K ++E+G SRR+ + I G V ++ + T +G +V P V+V+G ++ Sbjct: 43 NNAIRLQKLLAEAGFGSRRKCEEIILDGRVEVDDELVTTLGTRVDPKRQKVRVDGSRVKF 102 Query: 62 REAEDLVLIALNKPVGIVSTTEDG-ERDNIVDFV-NHSKRVFPIGRLDKDSQGLIFLTNH 119 LV +AL+KP ++S +D R + D V + +R+F +GRLD DS+GLI +TN Sbjct: 103 --NTKLVTLALHKPKRVLSAMDDPKGRFTLRDIVGDKYERIFHMGRLDYDSEGLILMTND 160 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGM-SAGVPILGTVTK----KCKVKKEAP 174 G+L ++ + EK Y+ TV+ I R + S GV + K + Sbjct: 161 GELSQHVMHPKYEVEKTYIATVEGKINGMVCRRLVSQGVNLEDGWIKLDRCAIIDQNHDT 220 Query: 175 FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFK 234 + +I L G NR +RR+ G+ VK+L RT+I + L + G +R L+ E+ L K Sbjct: 221 TMVKIVLHSGKNRIVRRIFGAVGFPVKRLVRTQIGPIKLGDLKAGSYRVLSQTEVRSLSK 280 Query: 235 LI 236 + Sbjct: 281 EV 282 >UniRef50_C0D9T3 Pseudouridine synthase n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D9T3_9CLOT Length = 300 Score = 237 bits (605), Expect = 4e-61, Method: Composition-based stats. Identities = 117/304 (38%), Positives = 164/304 (53%), Gaps = 46/304 (15%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEP---- 61 RLNK +S G+CSRREADR IE G V ++G A +G +V+ V G+++ Sbjct: 3 EERLNKLLSAMGVCSRREADRLIESGKVLVDGVPAKMGQKVRMDQTVVCRGKVVGRGEAA 62 Query: 62 ---------------------------------REAEDLVLIALNKPVGIVSTTEDGER- 87 + VL+A+NKP G+V T D ++ Sbjct: 63 AGAGNGKTARRVGSGRADGTAAQDARPASLPRSMKKPRPVLLAVNKPKGVVCTASDKDKA 122 Query: 88 DNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITE 147 NIVD + + RV+ +GRLDKDS+GL+ +TN GDLVNKI+R+GN HEKEY V VD+P+T Sbjct: 123 PNIVDMIQYPVRVYYVGRLDKDSEGLVLMTNQGDLVNKIMRSGNAHEKEYQVVVDRPVTA 182 Query: 148 EFIRGMSAGVPI--LGTVTKKCKVKKEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLER 205 EF+ M GV + L T CKV+K F I L QGLNRQIRRMCE G V+ L+R Sbjct: 183 EFLARMEKGVRLKELDRTTLPCKVRKTGDKRFSIVLTQGLNRQIRRMCEACGCHVRSLKR 242 Query: 206 TRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSSSEVKPKAKAKPKTAGIKRPVVKMEK 265 R+MN+ L + GE+R + E + KL+E+S++ + A + P+ +ME Sbjct: 243 VRVMNICLGDLKSGEYRQVEGAEYREFMKLLEHSTNLSFRQQNA------ARGPINRMEN 296 Query: 266 TAEK 269 + Sbjct: 297 ENGR 300 >UniRef50_Q6SI36 Pseudouridine synthase n=1 Tax=uncultured marine bacterium 105 RepID=Q6SI36_9BACT Length = 255 Score = 237 bits (605), Expect = 4e-61, Method: Composition-based stats. Identities = 86/255 (33%), Positives = 137/255 (53%), Gaps = 14/255 (5%) Query: 2 LPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLI 59 +P VRL K ++ +GI SRR A+R IE G V +NG+ T +G + P D ++V+G+ + Sbjct: 1 MPSPKVRLQKVLASAGISSRRAAERLIEVGRVTVNGRSVTKLGAKADPDLDDIRVDGRKV 60 Query: 60 EPREAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFV-NHSKRVFPIGRLDKDSQGLIFLT 117 + + + + KP G V+T D E R I++ + N + V+P+GRLD DS+GL+ LT Sbjct: 61 K--TGRPRIYLLVCKPRGYVTTRFDPEGRRTILNLISNVREYVYPVGRLDYDSEGLVILT 118 Query: 118 NHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVT--------KKCKV 169 N G L ++ E+ Y V V ++ I + GV I G T ++ K Sbjct: 119 NDGTLAARLTHPRYGVERVYEVRVRGVPSQAAIDSLRHGVLINGRRTASSSVKFLRRLKA 178 Query: 170 KKEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDEL 229 K + R+ + +G NRQ+R+MCE G+ V +L RT+I + S + +G+ R LT E+ Sbjct: 179 KSSENALLRVAIREGRNRQVRKMCEAIGHPVIRLRRTQIGPLRDSSLKVGKHRLLTTSEV 238 Query: 230 IDLFKLIENSSSEVK 244 L + E S + K Sbjct: 239 AALMRASEVSHPQDK 253 >UniRef50_C5CXG1 Pseudouridine synthase n=4 Tax=Comamonadaceae RepID=C5CXG1_VARPS Length = 604 Score = 237 bits (604), Expect = 4e-61, Method: Composition-based stats. Identities = 77/289 (26%), Positives = 147/289 (50%), Gaps = 12/289 (4%) Query: 1 MLPDS-SVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLI 59 +LP++ S +L+K ++++G+ SR E + I QG + +N + A IG +++ GD VK+NG+ I Sbjct: 191 LLPEADSPKLHKVLAQAGLGSRLEMEALILQGRISVNNEPAHIGQRIQYGDQVKINGKPI 250 Query: 60 EPR-EAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSK--RVFPIGRLDKDSQGLIF 115 R +IA +KPVG V T +D + R + + + + +GRLD +++GL+ Sbjct: 251 RYRIAPPPPRVIAYHKPVGEVVTHDDPQNRPTVFRKLPRLQQGKWQSVGRLDLNTEGLLL 310 Query: 116 LTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKV----KK 171 ++ GDL N+++ E+EY V V + E + + GV + + + + + Sbjct: 311 FSSSGDLANQLMHPRFGLEREYAVRVLGALNAEEKKKLLEGVRLDDGMAQFGTIEEGGGE 370 Query: 172 EAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELI 230 + +R+T+ +G NR++RR+ E G+ V +L R R + L G+ G W +L + ++ Sbjct: 371 GSNHWYRVTISEGRNREVRRLFESVGHAVSRLIRIRYGAMVLPRGLKRGAWMELDERDIS 430 Query: 231 DLFKLIENSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKR 279 LF+ + +P + + +G R A G++ Sbjct: 431 ALFQA--SGGGAPRPPQQQRGPGQEGAGGGRNGRNKKRRGNRNAGGGQQ 477 >UniRef50_Q042N1 Pseudouridine synthase n=3 Tax=Lactobacillus gasseri RepID=Q042N1_LACGA Length = 245 Score = 237 bits (604), Expect = 5e-61, Method: Composition-based stats. Identities = 69/239 (28%), Positives = 118/239 (49%), Gaps = 15/239 (6%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIG-DQVKPGDVVKVNGQLIEPR 62 D +R++KY++ + SR+E I++ V +NG+ TI QVK D+V V+G I + Sbjct: 10 DIEMRIDKYLANMNVGSRKEVHSLIKKKVVTVNGELVTIPKQQVKETDLVAVDGNKIAYQ 69 Query: 63 EAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKR---VFPIGRLDKDSQGLIFLTNH 119 + LNKP G++S TED + ++ + R + P+GRLDKD+ GL+ LTN Sbjct: 70 Q---YHYFLLNKPKGVISATEDRSQQTVISLLKTKDRYQGIAPVGRLDKDTTGLLLLTND 126 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI-LGTVTKKCKVK------KE 172 G L +++L K Y + E + + G+ + GT K K+K Sbjct: 127 GALAHELLAPNKHVAKVYRAKIAGVPDPETAKKFAQGLILGDGTKLKPAKLKILKQDQDN 186 Query: 173 APFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDELI 230 I + +G QI+RM G +V +L+R + + L + + GE++++ E+ Sbjct: 187 NLSQIEIQIQEGKYHQIKRMFGAVGMKVLELDRVSMGKLHLPADLKRGEYKEIDLAEIK 245 >UniRef50_C0W3E8 Pseudouridine synthase n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W3E8_9ACTO Length = 325 Score = 237 bits (604), Expect = 5e-61, Method: Composition-based stats. Identities = 68/252 (26%), Positives = 127/252 (50%), Gaps = 22/252 (8%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEPR 62 + RL K ++ +G+ SRR + I G V ++G T G +V P ++V+G + Sbjct: 74 TGERLQKVLAHAGVASRRACEEIIAAGRVSVDGVVVTEPGVRVDPSRQEIRVDGSRV--L 131 Query: 63 EAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFV-------------NHSKRVFPIGRLDK 108 D++ + L+KP G+V+T ED + R + D S R+ +GRLD Sbjct: 132 TDPDVITVLLHKPAGVVTTMEDPQGRPTVADLAEQFISEHRTELEHPESVRLVHVGRLDT 191 Query: 109 DSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCK 168 +++GL+ L+N GDL ++++ + K Y+ V+ + R + G+ + + + + Sbjct: 192 ETEGLLLLSNDGDLAHRLMHPSFEISKTYVAIVEGQVEGWVPRKLRRGIELDDGLAQADR 251 Query: 169 VKKE----APFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDL 224 V + + + ITL G NR +RRM + G+ V +L RT++ + + G+ G+ R L Sbjct: 252 VVVKDAGPSGSIVEITLHSGKNRIVRRMLDAVGHPVTRLARTKLGPLGIGGLRPGQMRRL 311 Query: 225 TDDELIDLFKLI 236 T +E+ L + + Sbjct: 312 TGEEITALQQEV 323 >UniRef50_A7HJ83 RNA-binding S4 domain protein n=3 Tax=Thermotogaceae RepID=A7HJ83_FERNB Length = 245 Score = 236 bits (603), Expect = 6e-61, Method: Composition-based stats. Identities = 75/232 (32%), Positives = 136/232 (58%), Gaps = 10/232 (4%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGD-QVKPGDVVKVNGQLIEPREA 64 S+RL+K++S + I +R E + I++G V +N + D VK D+++++G IEP + Sbjct: 14 SIRLDKFLSNAHIGTRNEVKKIIKEGRVSVNFEIIRNPDFHVKLDDIIELDGNRIEPHKN 73 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSK--RVFPIGRLDKDSQGLIFLTNHGDL 122 V I +KP G VSTT D E ++++ ++H + GRLDKD +GL+ LTN G+ Sbjct: 74 ---VYIIFHKPSGFVSTTSDRE-PSVLNLIDHPYLNELHIAGRLDKDVEGLLILTNDGEF 129 Query: 123 VNKILRAGNDHEKEYLVTVDK--PITEEFIRGMSAGVPIL-GTVTKKCKVKKEAPFVFRI 179 + ++ EKEY + + +T+ ++ +S G+ + GT T K++K + + + Sbjct: 130 THNLISPKKHIEKEYWIYTKENVEVTQNMVKMVSEGIELEKGTKTLPGKIRKVSEKIISL 189 Query: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELID 231 T+V+G Q+++MC G E +K+ R RI N++L G+ G+W++L+ +E+ Sbjct: 190 TIVEGKYHQVKKMCISLGIEWEKIVRVRIGNLTLEGLEKGKWKELSKEEISK 241 >UniRef50_A1K7C2 Pseudouridine synthase n=1 Tax=Azoarcus sp. BH72 RepID=A1K7C2_AZOSB Length = 356 Score = 236 bits (603), Expect = 6e-61, Method: Composition-based stats. Identities = 75/268 (27%), Positives = 131/268 (48%), Gaps = 18/268 (6%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREA 64 RL K ++++G+ SRRE + + G + +NG A++G ++ PGD VK+NG+LI R + Sbjct: 89 EPERLQKVLAQAGVASRREIEELVVAGRISVNGLPASLGQKIGPGDRVKLNGKLIPLRFS 148 Query: 65 ED-LVLIALNKPVGIVSTTEDGE-RDNIVDFVN--HSKRVFPIGRLDKDSQGLIFLTNHG 120 + ++ +KP G + + +D E R + + + R +GRLD ++ GL+ TN G Sbjct: 149 QRSPRVLVYHKPEGEIVSRDDPEGRPTVFERLPLLRKGRWLAVGRLDFNTSGLLLFTNDG 208 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA----PFV 176 DL N+++ + +EY V + +TEE + + G+ + + + Sbjct: 209 DLANRLMHPRYELTREYAVRLLGQLTEEQGQSLVDGIQLEDGPARFLSLVDAGGEGVNHW 268 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDELIDLFKL 235 +R+TL +G NR++RRM E G V +L R R V L + + G W +L + + L L Sbjct: 269 YRVTLAEGRNREVRRMFEAVGLTVSRLMRVRYGPVELPARLKRGMWMELPEADACALAGL 328 Query: 236 IENSSSEVKPKAKAKPKTAGIKRPVVKM 263 P + P G +R Sbjct: 329 ---------PPPRVDPSARGARREKAPR 347 >UniRef50_C8P302 Pseudouridine synthase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P302_ERYRH Length = 229 Score = 236 bits (603), Expect = 6e-61, Method: Composition-based stats. Identities = 55/232 (23%), Positives = 113/232 (48%), Gaps = 7/232 (3%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVK--PGDVVKVNGQLIEPREA 64 +RL+K+++ +G +R++ +++G V +N V D V V G+ + Sbjct: 1 MRLDKFLAHNGFGTRKDVKILVKKGMVTVNHDVVRDAGMVLNLEKDEVFVKGESVSY--- 57 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKR-VFPIGRLDKDSQGLIFLTNHGDLV 123 + + +NKP G + ++++ + R + +GRLD D++GL+ +TN G Sbjct: 58 QKDIYFMMNKPAGYICEHNPEMYPSVLELIESYHRDLVFVGRLDADTEGLLLITNDGQFS 117 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQ 183 +++ + ++ K+Y V +DKP F + G+ + + K +V+ +T+ + Sbjct: 118 HRVAHSKSNVHKQYYVELDKPFDLRFCEELEKGMMLGDELLKPAQVEVVGERAIHLTIGE 177 Query: 184 GLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDLFK 234 G Q++RM EV L+R +I + L + G +RDL+++E+ K Sbjct: 178 GKYHQVKRMMHACDNEVTYLKRIKIGALELDSSLQPGAYRDLSEEEINLFIK 229 >UniRef50_UPI0001C337CA ribosomal large subunit pseudouridine synthase B n=1 Tax=cyanobacterium UCYN-A RepID=UPI0001C337CA Length = 254 Score = 236 bits (603), Expect = 7e-61, Method: Composition-based stats. Identities = 75/241 (31%), Positives = 125/241 (51%), Gaps = 15/241 (6%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKP-GDVVKVNGQLIEPREAED 66 R+ K +S+ GI SRR A+ I + + LNG+ +GD+ P D+++++G++I+ + Sbjct: 4 RVQKILSQLGIASRRHAEILILEKRLKLNGQIVLLGDKADPNHDLLELDGKIIKSHKKTQ 63 Query: 67 LVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSKR----VFPIGRLDKDSQGLIFLTNHGD 121 L I +NKPVGI+ + +D + R ++D + + R + P+GRLD +S G + LTN G+ Sbjct: 64 LFYILVNKPVGIICSCKDSQNRSIVMDLLPSNLRKGMGIHPVGRLDMNSSGALLLTNDGN 123 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFV----F 177 L ++ K Y V V T+ ++ GV + G T ++ Sbjct: 124 LTLRLTHPRYHLPKIYEVLVRGNFTQAILKDWRQGVVLDGKKTLPAYLEVINNNRQYTNL 183 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-----SGIPLGEWRDLTDDELIDL 232 +I L +G NR IRR+ + F +V KL RT I +SL + LG +R L+ E+ L Sbjct: 184 KIILTEGKNRHIRRIAQKFELDVIKLHRTAIGPISLSTSKVDNVKLGHYRLLSSSEINTL 243 Query: 233 F 233 Sbjct: 244 K 244 >UniRef50_C7H4Z6 Pseudouridine synthase n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H4Z6_9FIRM Length = 235 Score = 236 bits (602), Expect = 7e-61, Method: Composition-based stats. Identities = 81/234 (34%), Positives = 128/234 (54%), Gaps = 11/234 (4%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGD-QVKPGDVVKVNGQLIEPREAE 65 +RL+KY++E+ C+R EA + +G V +NG GD Q++ GD V V+G + R+ Sbjct: 1 MRLDKYLAETAQCTRSEAKTLLNRGRVTVNGAVCKKGDTQLREGDSVAVDGAPLAYRQ-- 58 Query: 66 DLVLIALNKPVGIVSTTEDGERDNIVDFVNHS---KRVFPIGRLDKDSQGLIFLTNHGDL 122 V + LNKP G+VS + D +VD + + + +FP+GRLDK S G + LT+ G Sbjct: 59 -FVYLMLNKPEGVVSASTDKRDTTVVDLIGDAYPRRELFPVGRLDKTSTGFVLLTDDGGF 117 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI-LGTVTKKCKVKKEAP--FVFRI 179 ++IL K Y V +D P+TEE RG + GV + GT +V+ P ++ Sbjct: 118 AHEILAPKRHVSKTYTVVIDTPLTEEMRRGFAEGVTLADGTALSPAEVEALTPDGLTVKV 177 Query: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSG-IPLGEWRDLTDDELIDL 232 L QG+ QI+RM +G V L R I ++L + G+WR+L+ +E+ + Sbjct: 178 RLRQGVYHQIKRMFGVYGAGVNALHRDAIGGLALDPALAPGQWRELSAEEVTAI 231 >UniRef50_Q2LSY4 Pseudouridine synthase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LSY4_SYNAS Length = 251 Score = 236 bits (602), Expect = 8e-61, Method: Composition-based stats. Identities = 72/251 (28%), Positives = 121/251 (48%), Gaps = 10/251 (3%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVK-PGDVVKVNGQLIEPRE 63 RL K ++ SG+ SRR+A+ I +G V +N + +G + D ++V+G+LI Sbjct: 2 EERLQKILARSGVASRRKAEEMIREGRVSVNSEIVRELGSKADIERDEIRVDGKLI--CA 59 Query: 64 AEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTNHGD 121 E V + LNKP G V+ D + R ++ + R+FP+GRLD DS+GL+ LTN G Sbjct: 60 EETKVYVMLNKPRGYVTALSDPQKRPLVIHLLPELGVRLFPVGRLDYDSEGLLLLTNDGG 119 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKE----APFVF 177 ++ K Y V + + + G+ + +V E Sbjct: 120 FAQRVQHPRYRISKTYRVKISGRLNAAEFNRLQKGLELEDGKFAPDEVALEEINPKSSWL 179 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIE 237 + + +G NR IRR E G+EV +L RT + ++ L + G++R L E+ L + Sbjct: 180 TMKISEGRNRVIRRAFEQLGHEVLRLIRTAVADLHLGNLREGDYRLLKGWEVQQLLTPRK 239 Query: 238 NSSSEVKPKAK 248 S S++ P+ + Sbjct: 240 RSGSKILPEKE 250 >UniRef50_A6G735 Pseudouridine synthase n=2 Tax=Bacteria RepID=A6G735_9DELT Length = 300 Score = 236 bits (602), Expect = 8e-61, Method: Composition-based stats. Identities = 85/275 (30%), Positives = 143/275 (52%), Gaps = 16/275 (5%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPG-DVVKVNGQLIEPR 62 VRL K+++ +G+ SRR+A+ I G V +NG+ +G +V P D V V G+ I+ Sbjct: 29 DGVRLQKFMASAGVASRRKAEELITAGVVRVNGQVVRELGTRVFPERDRVTVRGEPIQ-- 86 Query: 63 EAEDLVLIALNKPVGIVSTT----EDGERDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLT 117 AE V LNKP G+VS+ ++ R ++ ++ S+R++P+GRLD S+G++ LT Sbjct: 87 -AESKVYYVLNKPDGVVSSAAGSVDERGRPTVISLLHGVSERLYPVGRLDFHSRGVLLLT 145 Query: 118 NHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGT-VTKK-----CKVKK 171 N G L + + K Y V +TEE + + GV + +T+ + Sbjct: 146 NDGGLAEALTHPRHGVVKTYHVKFQGKLTEEQEQLLRDGVELDDGAITRPVAELFAFRET 205 Query: 172 EAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELID 231 ++I + +GLNRQIRRM E G+ V KL R I +++ G+P GE+R L E+ Sbjct: 206 ATNVWYQIGIREGLNRQIRRMGEAIGHPVLKLIRVAIGDITADGVPEGEFRALNATEVGQ 265 Query: 232 LFKLIENSSSEVKPKAKAKPKTAGIKRPVVKMEKT 266 L ++ + + ++ + G +R K +K+ Sbjct: 266 LLANVKLAPEGRRGRSGGAGRPRGGQRDRPKAKKS 300 >UniRef50_D1N1S2 Pseudouridine synthase n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N1S2_9BACT Length = 241 Score = 236 bits (602), Expect = 9e-61, Method: Composition-based stats. Identities = 86/234 (36%), Positives = 122/234 (52%), Gaps = 6/234 (2%) Query: 1 MLPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLI 59 M D+ RL K +S +GI SRR A I+ G V +NG+ G +V PGD V+ +G + Sbjct: 1 MENDNRERLVKILSAAGIASRRGAGDLIKAGRVTVNGETVFEPGFRVAPGDRVEYDGVPV 60 Query: 60 EPREAEDLVLIALNKPVGIVSTTEDGERD-NIVDFVNHSK--RVFPIGRLDKDSQGLIFL 116 E V I LNKP G V T D D VD + + R+F GRLDKDS+GLI Sbjct: 61 --LAEERKVYIMLNKPRGYVCTNADPHADLKAVDLIRLTPPLRLFSAGRLDKDSEGLILF 118 Query: 117 TNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFV 176 +N GD V ++ ++ K Y V V + + M GV G + K V + Sbjct: 119 SNDGDYVARLTHPRHEILKVYQVRVRREFKPAELEQMRRGVLERGELLKVHAVSRCGDCT 178 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELI 230 + ITL +G NR+IRR+ G ++L+R +I + L G+P+G WR+LT E+ Sbjct: 179 YLITLNEGKNREIRRLTAALGSPTRRLKRLQIGALRLGGLPVGNWRELTPAEIA 232 >UniRef50_B3DRY9 Pseudouridine synthase n=7 Tax=Bifidobacterium RepID=B3DRY9_BIFLD Length = 256 Score = 236 bits (602), Expect = 9e-61, Method: Composition-based stats. Identities = 75/241 (31%), Positives = 129/241 (53%), Gaps = 11/241 (4%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEPR 62 +S+RL K ++++G SRR+ + I +G V ++G+ T +G +V P V+V+G + R Sbjct: 16 NSIRLQKLLAQAGFGSRRKCEDMITEGRVEVDGELVTELGTRVDPHKQQVRVDGSRV--R 73 Query: 63 EAEDLVLIALNKPVGIVSTTEDG-ERDNIVDFV-NHSKRVFPIGRLDKDSQGLIFLTNHG 120 + V +ALNKP ++S +D R + D V + +R+F +GRLD DS+GLI +TN G Sbjct: 74 VNPNHVTLALNKPRKVLSAMDDPKGRYTLRDIVGDKYERIFHMGRLDYDSEGLILMTNDG 133 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGM-SAGVPILGTVTK----KCKVKKEAPF 175 +L ++ + EK Y+ T++ I+ R + + GV + K Sbjct: 134 ELSQHVMHPKYEVEKTYVATLEGKISGTVCRRLVTTGVQLDDGWIKLDHCAIIDSSRDHT 193 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 + ++ L G NR +RR+ G+ VK+L RT+I + L + G +R L+ E+ L K Sbjct: 194 MVKVVLHSGKNRIVRRIFGSIGFPVKRLVRTQIGPIKLGDLKPGSYRVLSQTEVRSLSKE 253 Query: 236 I 236 + Sbjct: 254 V 254 >UniRef50_B6EJI1 Pseudouridine synthase n=8 Tax=Gammaproteobacteria RepID=B6EJI1_ALISL Length = 354 Score = 235 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 78/300 (26%), Positives = 151/300 (50%), Gaps = 23/300 (7%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDV-VKVNGQLIEPREA 64 S +L K ++ +G+ SRRE + I+ G V ++G++A +GD+++ D ++++G ++ +E+ Sbjct: 2 SEKLQKVLARAGLGSRRELETMIQAGRVSIDGQKAKLGDRLENVDARIRIDGHVVSVKES 61 Query: 65 EDLV--LIALNKPVGIVSTTEDGE-RDNIVDFVNHSK--RVFPIGRLDKDSQGLIFLTNH 119 D++ ++A +KP G + T D E R + D + K R +GRLD ++ GL+ T Sbjct: 62 TDVICRVLAYHKPEGELCTRHDPEGRRTVFDRLPKIKDSRWVSVGRLDANTAGLLLFTTD 121 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA----PF 175 G+L N+++ E+EY+ + I ++ ++ + GV + + V Sbjct: 122 GELANRLMHPSRKVEREYMCRIFGDINDKMVKNLVTGVKLEDGEARFEDVMYAGGEGMNH 181 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSG-IPLGEWRDLTDDELIDLFK 234 F + + +G NR++RR+ + G V +L+R R ++ L +P G W +L E+ L Sbjct: 182 TFYVVINEGRNREVRRLWDSQGVTVSRLKRVRYGDIFLEKALPRGGWMELELKEVNYLRD 241 Query: 235 LIENSSS-------EVKPKAKAKPKTAGIKRPVVKM-----EKTAEKGGRPASNGKRFTS 282 ++E + + + +AK K+ I+R V + E GGR N K+ Sbjct: 242 MVELPHEKESLLDVDKESRKRAKSKSQKIRRAVKRHDERTTEDRNTAGGRRGRNNKKPVG 301 >UniRef50_Q2W4E4 Pseudouridine synthase n=20 Tax=cellular organisms RepID=Q2W4E4_MAGSA Length = 247 Score = 235 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 65/235 (27%), Positives = 115/235 (48%), Gaps = 14/235 (5%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFL-NGKRATIGDQVKPGDVVKVNGQLIEPRE 63 + +RL + I+ G S+R+ I+ G V L +G G + D ++V+G+ ++P Sbjct: 13 TDMRLIRLIANLGYGSQRDVKAMIKAGRVTLADGTVLDDGTKA-AHDDIRVDGEPLDP-- 69 Query: 64 AEDLVLIALNKPVGIVSTTEDGERDNIVDFVN-----HSKRVFPIGRLDKDSQGLIFLTN 118 +++ L+KP G +T D R + + + + V P+GRLD+DS GL+ LT+ Sbjct: 70 -PPGLVLMLHKPEGYTCSTSDPGR-IVYELLPERFMHRNPIVAPVGRLDRDSTGLLLLTD 127 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI---LGTVTKKCKVKKEAPF 175 G L ++I K Y VT+ +P++ E ++G + T ++ P Sbjct: 128 DGPLAHRITSPKRHVPKTYEVTLARPLSGEEGAVFASGTLMLRSESTPLAPAELVVSGPQ 187 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELI 230 RIT+ +G Q++RM G V++L R I + L + G+WR L+ E+ Sbjct: 188 TARITITEGRYHQVKRMFAAVGNHVERLHRAAIGGLDLGDLAEGQWRPLSPAEIA 242 >UniRef50_Q140U9 Pseudouridine synthase n=80 Tax=Proteobacteria RepID=Q140U9_BURXL Length = 633 Score = 235 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 75/260 (28%), Positives = 137/260 (52%), Gaps = 10/260 (3%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPRE 63 D + +L+K ++E+G+ SRR+ + I G V +NG+ A IG ++ P D V++NG+ ++ + Sbjct: 214 DDAPKLHKVLAEAGMGSRRDMEELIVAGRVSVNGEPAHIGQRIMPTDQVRINGKPVKRKL 273 Query: 64 A-EDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSK--RVFPIGRLDKDSQGLIFLTNH 119 A + ++ +KP G + + D E R ++ D + K + +GRLD +++GL+ LT Sbjct: 274 ASKPPRVLLYHKPTGEIVSHADPEGRPSVFDKLPPMKTAKWLAVGRLDFNTEGLLMLTTS 333 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK----KEAPF 175 GDL N+ + E+EY V V + E + + GV + +++ + Sbjct: 334 GDLANRFMHPRYSVEREYAVRVVGELAEGMRQKLLHGVELDDGPANFLRIRDGGGEGTNH 393 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDELIDLFK 234 + + L +G NR++RRM E G V +L RTR +SL G+ G W +L D+++ L Sbjct: 394 WYHVALAEGRNREVRRMFEAAGLMVSRLIRTRHGPISLPKGLKRGRWEELEDNQVRALMA 453 Query: 235 LIE-NSSSEVKPKAKAKPKT 253 + + +E + A P+ Sbjct: 454 SVGLKAPTEERGSRNAAPER 473 >UniRef50_A3JIZ1 Pseudouridine synthase n=1 Tax=Marinobacter sp. ELB17 RepID=A3JIZ1_9ALTE Length = 367 Score = 235 bits (600), Expect = 1e-60, Method: Composition-based stats. Identities = 78/312 (25%), Positives = 149/312 (47%), Gaps = 26/312 (8%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREA 64 R+ K ++ +G+ SRRE + +++ G + +NGK T G + DV +++G+ +E A Sbjct: 55 GPERIQKLLARAGVGSRREIEGWMDAGRLLVNGKPVTPGQKATVSDVFELDGKRLEVAAA 114 Query: 65 EDLV--LIALNKPVGIVSTTEDGE-RDNIVDFVNHSK--RVFPIGRLDKDSQGLIFLTNH 119 +++ ++ NKP G V+T +D E R + D + + R IGRLD ++ GL+ T Sbjct: 115 AEVLRRVLIYNKPEGEVTTRKDPEGRPTVFDRLPRLREHRWISIGRLDLNTTGLVMFTTD 174 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA----PF 175 G+L N+++ ++ ++EY V + + + I + GV + K + Sbjct: 175 GELANRLMHPSSEIDREYAVRIFGEVDDAMIERLRTGVTLEDGEAKFSDISAAGGTGMNR 234 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSG-IPLGEWRDLTDDELIDLFK 234 F +TL++G NR++RR+ E G V +L+R R ++ L + +G+W +L + L + Sbjct: 235 WFHVTLLEGRNREVRRLWESQGVRVSRLKRVRYGSIFLPSRLTVGKWEELDQKAVDLLSR 294 Query: 235 LI------------ENSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRP----ASNGK 278 + + ++++ + + KA P T R + +G R S + Sbjct: 295 TVGLAKMAVPQQTPDEAAAQARQQRKAAPVTNRSNRAASSPGSKSGQGARKWAVADSKPQ 354 Query: 279 RFTSPGRKKKGR 290 R R K R Sbjct: 355 RSGGKARNDKPR 366 >UniRef50_Q1GFA6 Pseudouridine synthase n=3 Tax=Rhodobacteraceae RepID=Q1GFA6_SILST Length = 422 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 92/295 (31%), Positives = 133/295 (45%), Gaps = 18/295 (6%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEPREAED 66 R+ K +S +G+ SRREA+R I +G V +NGK + V D + V+G + EAE Sbjct: 63 RIAKVLSRAGVASRREAERMIAEGRVAVNGKVIDSPALNVTNLDRIVVDGNPLP--EAEA 120 Query: 67 LVLIALNKPVGIVSTTEDG-ERDNIVDFVNHS-KRVFPIGRLDKDSQGLIFLTNHGDLVN 124 L KP G+V+TT D R I D + RV +GRLD +S+GL+ LTN G + Sbjct: 121 PRLWLYYKPNGLVTTTSDEKGRKTIFDALPEDLPRVMTVGRLDLNSEGLLLLTNDGGVKR 180 Query: 125 KILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKV----KKEAPFVFRIT 180 ++ + Y V ++ + + GV I G + + ++ A I Sbjct: 181 QLELPSTGWLRRYRVRINGRPQDHEFDVLRKGVVIDGERFQPMTISLDRQQGANAWLTIG 240 Query: 181 LVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSS 240 L +G NR+IRR E GY V +L R L + GE +L + D L ++ Sbjct: 241 LREGKNREIRRAMEEVGYPVNRLLRISYGPFQLGTLKEGEVEELRPRVVRDQLGL---AA 297 Query: 241 SEVKPKAKAKPKTAGIKRPVVKMEKTAEKG-----GRPASNGKRFTSPGRKKKGR 290 E +AK KP G + P KTA KG RP G GR G+ Sbjct: 298 PEGDGEAKKKPTRPG-RGPRNPGAKTAGKGIGAPNARPTGKGAVKAPEGRVFSGK 351 >UniRef50_D1R854 Pseudouridine synthase n=4 Tax=Chlamydiales RepID=D1R854_9CHLA Length = 261 Score = 234 bits (598), Expect = 2e-60, Method: Composition-based stats. Identities = 71/236 (30%), Positives = 124/236 (52%), Gaps = 5/236 (2%) Query: 2 LPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQ-VKPGDVVKVNGQLIE 60 + + RL+K ++ +G+ SRR + I G V +NG+ + V DV+ GQ + Sbjct: 28 MDKTKQRLSKVMAAAGVASRRACEMLIFDGCVTVNGEVTLVPQTLVDENDVITCKGQSVG 87 Query: 61 PREAEDLVLIALNKPVGIVSTTED-GERDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTN 118 + ++ V LNKP+G + + + + ++D + +R+F +GRLDKD+ GLI +TN Sbjct: 88 --KKQNKVYYILNKPIGYICSNKRNKDSKIVLDLFDTVEERLFTVGRLDKDTSGLIIVTN 145 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFR 178 G N+++ + KEYLV ++ + E + +S+G + T + +V K + Sbjct: 146 DGHFANRVIHPSANIHKEYLVKTNEEVEAEHLSALSSGTLVEKTFVRPIRVSKVRRGTLK 205 Query: 179 ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFK 234 IT+ +G R+IR + E V +L R RI + L + GEWR++T E LF+ Sbjct: 206 ITIAEGKKREIRLLMESAKLPVLELTRIRIGGLHLGPLQPGEWREMTAREQTLLFE 261 >UniRef50_Q49YI4 Pseudouridine synthase n=2 Tax=Staphylococcus RepID=Q49YI4_STAS1 Length = 232 Score = 234 bits (598), Expect = 2e-60, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 120/232 (51%), Gaps = 9/232 (3%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEPREA 64 +RL+K++S G+ +R E + +++ V ++ K T Q+ P ++VKVN Q I+ Sbjct: 1 MRLDKFLSNMGVGTRTEVKQRLKKKQVTIDDKVETSPKKQINPELEIVKVNDQKIDFV-- 58 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSK--RVFPIGRLDKDSQGLIFLTNHGDL 122 + V + LNKP +S T D + ++D + + +FP+GRLDKD++GL+ +TN G Sbjct: 59 -NKVYLMLNKPKDYISATTDEQHKTVLDLIEDYRYLDLFPVGRLDKDTEGLLLITNDGQF 117 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAP-FVFRITL 181 ++++ G K Y V K IT+ I G+ + + K K+ + +T+ Sbjct: 118 NHELMSPGKHVAKTYEVISQKNITKNDINAFKVGIELNEGLAKPAKLVQGDELNKSFVTI 177 Query: 182 VQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSG-IPLGEWRDLTDDELIDL 232 +G Q++RM EV L+R RI ++ L + GE+R LT + L Sbjct: 178 YEGRYHQVKRMFHAIDNEVLALKRIRIGDLQLDSTLASGEYRHLTQQDFKLL 229 >UniRef50_Q3J464 Pseudouridine synthase n=15 Tax=Bacteria RepID=Q3J464_RHOS4 Length = 508 Score = 234 bits (598), Expect = 2e-60, Method: Composition-based stats. Identities = 81/295 (27%), Positives = 129/295 (43%), Gaps = 11/295 (3%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEPRE 63 R+ K +S +GI SRR+A+R IE G + +NG+ + V P D + V+GQ + P Sbjct: 6 DGERIAKVLSRAGIASRRDAERMIELGRIAVNGRTIDSPALNVGPKDRITVDGQPLAP-- 63 Query: 64 AEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHS-KRVFPIGRLDKDSQGLIFLTNHGD 121 E L KP G+V++ D R+ + D + RV +GRLD +S+GL+ LTN G+ Sbjct: 64 PEPARLWLYYKPEGLVTSASDEKGRETVFDHLPEGMPRVMSVGRLDLNSEGLLLLTNDGE 123 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK----KEAPFVF 177 L ++ ++Y V V T+ + + G+ + G + V + A Sbjct: 124 LKRRLELPSTGWLRKYRVRVKGNPTDADLEPLRKGITVEGESFQPMTVSLDRVQGANAWL 183 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIE 237 + L +G NR+IRR G V +L R L+ + G ++ L D L Sbjct: 184 TVGLREGKNREIRRAMSALGLTVNRLIRVSYGPFRLNELEPGMVEEVRPKILRDQLGLDP 243 Query: 238 NSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEK--GGRPASNGKRFTSPGRKKKGR 290 ++ E +P KP+ A + A G RPA S + R Sbjct: 244 HADGEARPARGRKPEGAARPARSEGAARPARAEGGARPARAEGAARSERTARPPR 298 >UniRef50_B2HUK5 Pseudouridine synthase n=9 Tax=Gammaproteobacteria RepID=B2HUK5_ACIBC Length = 307 Score = 234 bits (597), Expect = 3e-60, Method: Composition-based stats. Identities = 73/296 (24%), Positives = 141/296 (47%), Gaps = 12/296 (4%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAE 65 S +L K ++ G+ SRR + I G V +NG+ A +G++++PGD ++++G+ ++ + + Sbjct: 2 SEKLQKVLARIGLGSRRYMEEVIAAGRVSVNGRIAQVGERIEPGDELRIDGRKVQFQIED 61 Query: 66 --DLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH--SKRVFPIGRLDKDSQGLIFLTNHG 120 ++ KP G + + D E R + D + + R +GRLD +S GL+ TN G Sbjct: 62 EIRRRVLIYYKPEGEICSRNDPEKRPTVFDHLPQIANDRWVMVGRLDINSTGLLLFTNDG 121 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA----PFV 176 +L N+++ N+ E+EY V V +T + + M GV + K + Sbjct: 122 ELANRLMHPSNEIEREYAVRVMGEVTPQLRQNMVNGVELEDGPAKFESFSEIGGEGINRW 181 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDLFKL 235 +++ + +G NR++RR+ E G +V +L RTR V L + G W +L ++ +L K Sbjct: 182 YQVVVKEGRNREVRRIFESQGLKVSRLLRTRYGTVILPRELRTGRWMELDKTDIDNLAKS 241 Query: 236 IENSSSEVKP--KAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKG 289 +E + + ++P+ + R + + G ++K Sbjct: 242 VELKPRQGTGLFGMAKRRTERMTEKPMAARRGGYLRQQRRDDEKEAPANTGNQRKS 297 >UniRef50_C5WHE9 Pseudouridine synthase n=3 Tax=Lactobacillales RepID=C5WHE9_STRDG Length = 245 Score = 233 bits (596), Expect = 4e-60, Method: Composition-based stats. Identities = 72/237 (30%), Positives = 123/237 (51%), Gaps = 11/237 (4%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAE 65 ++RL+K++ E+G+ SR + +++ + +N + T +V+ + V L +P E Sbjct: 2 TMRLDKFLVETGVGSRSQVKSLLKKKAILVNQEVETSP-KVQINEHKDVVTYLGKPLTYE 60 Query: 66 DLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKR---VFPIGRLDKDSQGLIFLTNHGDL 122 V LNKP G +S T+D + ++D ++ + R VFP+GRLDKD++GL+ LTN+G L Sbjct: 61 AFVYYILNKPAGFLSATKDRAQATVIDLLDETARQKDVFPVGRLDKDTRGLLLLTNNGQL 120 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAP------FV 176 + +L KEYL V +T+ + G+ + K++ V Sbjct: 121 AHDLLSPKKHVTKEYLAKVAGIMTDADKDDFAKGISLKDHQCLPAKLEVLDKDLSQETCV 180 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDL 232 IT+ +G Q++RM G EV +L+R + + L G+ G++R LT DEL L Sbjct: 181 VSITIQEGKFHQVKRMVAACGKEVLELQRLSMGPLRLDPGLAEGDFRRLTSDELQSL 237 >UniRef50_A6LUE3 Pseudouridine synthase n=3 Tax=Clostridium RepID=A6LUE3_CLOB8 Length = 281 Score = 233 bits (596), Expect = 4e-60, Method: Composition-based stats. Identities = 103/280 (36%), Positives = 146/280 (52%), Gaps = 55/280 (19%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAED 66 +R+NK S GICSR+E +R IE+ + +NG+ G V D + +G+ I E Sbjct: 1 MRINKLFSNYGICSRKETNRLIEEKRIIINGRYCVEGQWVNDSDEIIFDGKPISTVEK-- 58 Query: 67 LVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNKI 126 V I LNKPVGI T E+ DNI+ ++ + +FP+GRLDKDSQGLI +TN G++ N+I Sbjct: 59 -VYIVLNKPVGITCTAENKVSDNIISYMKYPHYIFPVGRLDKDSQGLILMTNDGEVANRI 117 Query: 127 LRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILG------------------------- 161 L + N HEKEYLV V+K +EF++ MS GV I G Sbjct: 118 LESDNMHEKEYLVQVNKNFDDEFLKRMSNGVEITGNKSSGVRRISDKLGLYKKIEDKEIL 177 Query: 162 ---------------------------TVTKKCKVKKEAPFVFRITLVQGLNRQIRRMCE 194 T+ C+V++ F+I L QG+N+QIR+M Sbjct: 178 LGEEDPGDSSIVQLKELKNIEREQNKFVKTRPCQVERVDDNTFKIILTQGMNKQIRKMSG 237 Query: 195 HFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFK 234 GY+V KLER RIMN+ L+ + G+WR L ++E+ L Sbjct: 238 ALGYKVIKLERIRIMNIKLNDLETGKWRYLEENEMKSLKN 277 >UniRef50_UPI0001BC54DC ribosomal large subunit pseudouridine synthase B n=3 Tax=Fusobacterium RepID=UPI0001BC54DC Length = 239 Score = 233 bits (596), Expect = 4e-60, Method: Composition-based stats. Identities = 87/239 (36%), Positives = 135/239 (56%), Gaps = 6/239 (2%) Query: 2 LPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEP 61 + ++ +R+NK+++ G+ SRR+ D +IE+G + +NG AT G +V D + VNG+ Sbjct: 1 MEENKIRINKFLASKGLASRRQVDLWIEEGRISVNGSLATSGQKVSEEDDIVVNGKS-IS 59 Query: 62 REAEDLVLIALNKPVGIVST-TEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHG 120 ++ + V L K ++S +D R +VD V R+FP+GRLD + GLI LTN G Sbjct: 60 QKKQKKVYYLLYKEEEVLSAVKDDRGRRTVVDCVLSPYRIFPVGRLDYRTSGLILLTNDG 119 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKK---CKVKKE-APFV 176 DL N+++ + K Y V +T+E ++ + GV + T KVK E Sbjct: 120 DLFNRMMHPRAEIFKSYEVLAKGHLTKEQLKTLEEGVELEEGKTLAALIAKVKYEKGNTF 179 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 F I++ +G NRQIRRM E G V +L RT+I +SL G+ LGE+R L + E+ L+ L Sbjct: 180 FEISIREGKNRQIRRMVEAVGSRVYRLRRTKIGKLSLDGLSLGEYRALEEKEIEYLYSL 238 >UniRef50_A6DMJ6 Pseudouridine synthase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DMJ6_9BACT Length = 239 Score = 233 bits (596), Expect = 5e-60, Method: Composition-based stats. Identities = 73/234 (31%), Positives = 117/234 (50%), Gaps = 11/234 (4%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIG--DQVKPGDVVKVNGQLIEPR 62 + +RL+K I++ +R EA R ++ G V +N +G DVV +G+++E R Sbjct: 6 AKIRLDKMIAKCTDLTRSEATRALKNGFVKVNDIPQKVGKSTIDLANDVVTFDGEVLEYR 65 Query: 63 EAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNH---SKRVFPIGRLDKDSQGLIFLTNH 119 E + LNKP G V +D ++D + S+ F GRLD D+ GL+ LT+ Sbjct: 66 ET---IYFMLNKPKGYVCAAKDERLKTVLDLLPPALASREPFSCGRLDIDTTGLVILTDD 122 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILG--TVTKKCKVKKEAPFVF 177 G + I EK YLV +++E +R + GV + G +T K++K + Sbjct: 123 GTWAHGITSPKRKCEKSYLVGSVSELSDEDMRNLEQGVYLDGDDKITAPAKIEKIDEKTY 182 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDELI 230 R+ + +G Q++RM E VK L R +I +SL + G WRDLT +E+ Sbjct: 183 RLKITEGRYHQVKRMFEAVDNMVKSLHREQIGGLSLDDDLDEGNWRDLTAEEVK 236 >UniRef50_A9GX03 Pseudouridine synthase n=2 Tax=Bacteria RepID=A9GX03_SORC5 Length = 399 Score = 233 bits (595), Expect = 5e-60, Method: Composition-based stats. Identities = 90/314 (28%), Positives = 149/314 (47%), Gaps = 32/314 (10%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVK-PGDVVKVNGQLIEPRE 63 RL K I+ +G+ SRR ++ I G V +NG+ T +G + D ++V+G+ + Sbjct: 2 EERLQKIIARAGVASRRASEELILAGRVRVNGRVVTELGLKADRQKDRIEVDGKRLV--- 58 Query: 64 AEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHS-KRVFPIGRLDKDSQGLIFLTNHGD 121 +E V +AL+KP +VST D E R + D V + R++P+GRLD + G++ +TN GD Sbjct: 59 SEAPVYVALHKPRNVVSTLRDPEGRPTVADHVRGTGARLYPVGRLDFATSGILLMTNDGD 118 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK----KEAPFVF 177 N +L K Y++ V ++++ + G+ + VT + + + Sbjct: 119 FANALLHPRGGVPKTYVLKVQGVMSDDDLTPWREGIRLEDGVTLPAEARLLRHEGDKTWL 178 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLI- 236 +TL +G N+QIRRM E G+ V +L RT VS G+ GEWR LT DEL+ + + Sbjct: 179 EVTLREGRNQQIRRMGEATGWPVMRLARTTFAGVSSEGLRPGEWRALTVDELLHIREAFG 238 Query: 237 -------------------ENSSSEVKPKAKAKPKTAGIKRPVVKMEK-TAEKGGRPASN 276 ++S + AKA P+ + A+ R +N Sbjct: 239 VPKRIRGAVMGASSGPVDHRRTASSARSGAKASPRPTQEAAGAAARSRGPAQPRVRSRAN 298 Query: 277 GKRFTSPGRKKKGR 290 ++PG+ GR Sbjct: 299 ADAPSAPGQGPAGR 312 >UniRef50_Q688C2 Pseudouridine synthase n=1 Tax=Mycoplasma mobile RepID=Q688C2_MYCMO Length = 235 Score = 233 bits (595), Expect = 6e-60, Method: Composition-based stats. Identities = 80/237 (33%), Positives = 131/237 (55%), Gaps = 5/237 (2%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREA 64 +R+ K IS++GI SRR A+ I + V +NG A IGD+ DV+ V+ ++I Sbjct: 2 EKIRIQKLISQAGISSRRAAEDLILKKRVKINGVIAKIGDKASLEDVILVDEKVIS---K 58 Query: 65 EDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHSK-RVFPIGRLDKDSQGLIFLTNHGDL 122 E+ V LNKP +V+T +D R I DF++ K ++FP+GRLD D+ G+I LTN G+ Sbjct: 59 EEKVYYLLNKPKNVVTTLKDNFNRSIITDFIDEKKYKIFPVGRLDYDTTGIIILTNDGET 118 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLV 182 NK+L + + Y V +DK ++ E I+ +++ L + +V K + + ++I L Sbjct: 119 ANKLLHPKYEIPRIYEVIIDKELSLEEIKYLNSQEVFLNSKKSFQEVSKISNYKYKIKLH 178 Query: 183 QGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENS 239 QG I+++ E G +VK L RT +L + +G +R L E+ L ++N Sbjct: 179 QGSYHHIKKLFEIVGKKVKDLNRTEYAFFNLENLSIGNYRKLNKHEIDRLLNFVKNK 235 >UniRef50_Q3AVD5 Pseudouridine synthase n=3 Tax=Cyanobacteria RepID=Q3AVD5_SYNS9 Length = 247 Score = 233 bits (595), Expect = 6e-60, Method: Composition-based stats. Identities = 75/246 (30%), Positives = 134/246 (54%), Gaps = 12/246 (4%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPG-DVVKVNGQLIEPREAED 66 RL K ++ +G+CSRR + +++ G V ++G+ A++GDQ P +++V+G + ++ Sbjct: 5 RLQKLMAAAGLCSRRRGEDWLQAGRVTVDGRVASLGDQADPNSQLIEVDG--VPLISVQE 62 Query: 67 LVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSKR--VFPIGRLDKDSQGLIFLTNHGDLV 123 + LNKPVG++ + D + R ++D + H +R + P+GRLD DS+G + LT+ G+L Sbjct: 63 PRVFLLNKPVGVICSCRDPQGRATVLDCLPHQERSGLHPVGRLDADSRGALLLTDQGELT 122 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKV----KKEAPFVFRI 179 ++ +H K Y V V + + +R G+ + G +T+ +V + A + + Sbjct: 123 LRLTHPRYNHAKTYRVLVRGIPSSQALRRWRDGLLLDGRLTRPARVHCLRSRGASSLLEV 182 Query: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENS 239 L +G NRQIRR+ E G+ V L+R I + L + G WR L E + L+ N+ Sbjct: 183 ELKEGRNRQIRRVAELLGHPVIDLQRVAIDGIRLDDLAEGCWRRLDAREWSTI--LVGNA 240 Query: 240 SSEVKP 245 + P Sbjct: 241 PRSMDP 246 >UniRef50_C2KPR0 Pseudouridine synthase n=3 Tax=Mobiluncus RepID=C2KPR0_9ACTO Length = 278 Score = 233 bits (594), Expect = 6e-60, Method: Composition-based stats. Identities = 82/242 (33%), Positives = 131/242 (54%), Gaps = 9/242 (3%) Query: 2 LPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIE 60 +P+ VRL K +S++G+ SRR ++ I++G V ++G+ T +G +V P + VNGQ I Sbjct: 37 IPEEPVRLQKLLSQAGVASRRASEDLIKRGRVQVDGETVTEMGLKVLPSARITVNGQRIH 96 Query: 61 PREAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTN 118 A L + A NKPVG VST + + R + D+ +RVF +GRLD + GLI LTN Sbjct: 97 TDAA--LQVWAFNKPVGTVSTMQPEDDRPCLGDWATKLPQRVFHVGRLDVATAGLILLTN 154 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK----KEAP 174 +GDL N+++ + K Y+ V + + + GV + VTK K + Sbjct: 155 NGDLANRLVHPRYEVPKTYVAMVQGQVKPGLGKVLRRGVELEDGVTKVDTFKLVEVRRGS 214 Query: 175 FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFK 234 + ++TL G NR +RR+ G+ V L RT I + L + G +R LT +L+ L + Sbjct: 215 SIVQLTLHSGKNRVVRRLLSEVGHPVSALTRTAIGTLRLGDLKEGHFRLLTGSDLVKLQE 274 Query: 235 LI 236 ++ Sbjct: 275 MV 276 >UniRef50_Q1Q1Q0 Pseudouridine synthase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1Q0_9BACT Length = 260 Score = 233 bits (594), Expect = 7e-60, Method: Composition-based stats. Identities = 86/260 (33%), Positives = 137/260 (52%), Gaps = 12/260 (4%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEPREAE 65 RL K ++ +GI SRRE + I G V ++G+R T +G V G V+ +G I P E Sbjct: 4 RLQKVLASAGIGSRRECENVILAGRVTVDGERVTALGATVDAGKSVIYCDGMPIRP---E 60 Query: 66 DLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHSK-RVFPIGRLDKDSQGLIFLTNHGDLV 123 + LNKP + T D R +D + + K R++ IGRLDK S+GLI +TN G+L Sbjct: 61 AKIYYLLNKPKDCLCTNYDELNRLRAIDIIKNVKQRLYTIGRLDKQSEGLIIITNDGELS 120 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKE----APFVFRI 179 NK+ + K Y + +D ++ E I + +GV + T+ ++KK F + Sbjct: 121 NKLSHPKYEVNKTYFIEIDGYLSNETITALQSGVWLAFGKTQPVRIKKMHRSFKKSRFEM 180 Query: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENS 239 L +G NR+IRRM G++V+ L R +I ++ + +G++R LT+ E+ L+ + E Sbjct: 181 ILCEGKNREIRRMLADHGHKVRTLRRIKIGSLCDPDLKVGKYRKLTEQEIKSLYSMTEKK 240 Query: 240 SSEVK-PKAKAKPKTAGIKR 258 E K K + TA K+ Sbjct: 241 PIEKKSGKQRYDTVTASKKK 260 >UniRef50_B0VG32 Pseudouridine synthase n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VG32_9BACT Length = 279 Score = 233 bits (594), Expect = 7e-60, Method: Composition-based stats. Identities = 77/238 (32%), Positives = 125/238 (52%), Gaps = 10/238 (4%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEPRE 63 ++RLN+Y+++ G+ SRR+ + +I G + +NG + Q+ PG D V ++G+ I+P Sbjct: 39 TLRLNRYLADCGLGSRRKVEEFITTGRIAVNGNLVQDLSRQIIPGKDKVTLDGKPIQP-- 96 Query: 64 AEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHS-KRVFPIGRLDKDSQGLIFLTNHGD 121 A++ + LNKP G V + D R + + K++ GRLDK+S+GL+F TN Sbjct: 97 AKEKFYLILNKPRGYVVSQNDELGRKTVYSLLPPKGKQLAYAGRLDKESEGLLFFTNDTA 156 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKC----KVKKEAPFVF 177 L+N + N EK Y V +++P+ + + GV I G T K K Sbjct: 157 LINLLTHPKNKVEKVYRVDINRPLNNMELNMLRKGVEIEGGKTLPAGIFVKSKNANGMTL 216 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 +I + +G RQIR+M E G +V L+R + + L +P+G WR L E+ L L Sbjct: 217 KIVITEGRKRQIRQMIEAVGAKVTYLKRLQFGPLKLKDLPVGRWRLLEPGEVKALLSL 274 >UniRef50_B3PMD0 Pseudouridine synthase n=2 Tax=Mycoplasma RepID=B3PMD0_MYCA5 Length = 251 Score = 232 bits (593), Expect = 8e-60, Method: Composition-based stats. Identities = 62/234 (26%), Positives = 124/234 (52%), Gaps = 3/234 (1%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPRE 63 + ++++ K IS+ G CSRR+A+ I+Q + +N + AT+G +V D + ++G+ + + Sbjct: 9 EKTIKIQKAISQVGYCSRRQAEELIKQKRIKINHQVATLGQRVLADDQIFIDGKKLNIKP 68 Query: 64 AEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDL 122 + + NKP + T +D E R I +++ + + +GRLD +S G+I +TN GD Sbjct: 69 PK--FYLVFNKPKNTICTLKDPEKRKTIYEYMGLKEYAYSVGRLDFNSTGIILVTNDGDF 126 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLV 182 N I + ++ Y V ++K ++E +++ IL + K APF + ++L Sbjct: 127 ANLIAHPSANIKRVYEVVLEKELSEGDFNYLNSNKVILNGKKSSQSLSKLAPFKYSVSLY 186 Query: 183 QGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLI 236 +G N ++ + VK+L R ++ + + +G+ R L++ E+ +L L Sbjct: 187 EGRNHHVKNLFLLVNNYVKELHRVSYGPITDANLKIGKTRHLSESEVQNLKTLA 240 >UniRef50_Q04F57 Pseudouridine synthase n=2 Tax=Oenococcus oeni RepID=Q04F57_OENOB Length = 237 Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats. Identities = 64/235 (27%), Positives = 120/235 (51%), Gaps = 11/235 (4%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREAED 66 RL K I+++G+ SRR+A+ I G V +NGK T +G +V D+V V+ + I E Sbjct: 6 RLQKRIAQAGVASRRKAEEMIVNGQVKVNGKIITKLGKKVSSDDIVYVDNKKINE---ES 62 Query: 67 LVLIALNKPVGIVSTTED-GERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNK 125 LNKP G VS+ + ++++ + R+F +GRLD+D+ G++ LTN G+L K Sbjct: 63 FEYYLLNKPAGYVSSNRSYPNQPSVIELIKTKTRIFSVGRLDQDTTGVLLLTNDGELTQK 122 Query: 126 ILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK------KEAPFVFRI 179 + + ++ Y V + E+ I ++ + G + + K + I Sbjct: 123 LTHPKHRIKRTYAAWVKGIVNEDEIEQLTKPIRFDGEIYFPQAARILKVDQKRQESLIEI 182 Query: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFK 234 T+ +G N +I+++ + G+ V KL R +++ + G+ R L++ E+ + + Sbjct: 183 TIAEGKNHEIKKILDFIGHPVIKLNRDMFDGITIGNLKKGQHRALSEQEVEKIKR 237 >UniRef50_Q38VQ0 Pseudouridine synthase n=6 Tax=Lactobacillus RepID=Q38VQ0_LACSS Length = 239 Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats. Identities = 61/243 (25%), Positives = 115/243 (47%), Gaps = 15/243 (6%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIG-DQVKPGDVVKVNGQLIEPREAE 65 +R+++++S + +R+ ++ G V + K QV P VV V+ + I + Sbjct: 1 MRIDRFLSHMNVGTRKTLKPLLKAGRVRVADKVIKEAKYQVTPETVVYVDDEPIRY---Q 57 Query: 66 DLVLIALNKPVGIVSTTEDGERDNIVDFV---NHSKRVFPIGRLDKDSQGLIFLTNHGDL 122 LNKP G++S T D + ++D ++ + +FP+GRLDKD+ GL+ +TN GDL Sbjct: 58 TNFYWLLNKPAGVISATTDPQ-KTVMDLFAPADYREDLFPVGRLDKDTTGLLLITNDGDL 116 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKE------APFV 176 + +L K Y + +T +AG+ + + ++ + Sbjct: 117 AHDLLSPKKHVAKTYRAKIAGVVTAADQAQFAAGLKLRDFDAQPAQLTILRTDTARQESL 176 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDELIDLFKL 235 + + +G Q++RM G EV LER ++ +SL + + G++R LT E+ L + Sbjct: 177 IEVEIHEGKFHQVKRMFHAVGKEVLTLERIKMGPLSLPADLKRGQYRALTTTEIDALQRA 236 Query: 236 IEN 238 + Sbjct: 237 TQK 239 >UniRef50_B6W7S5 Pseudouridine synthase n=2 Tax=Anaerococcus RepID=B6W7S5_9FIRM Length = 231 Score = 232 bits (592), Expect = 1e-59, Method: Composition-based stats. Identities = 84/234 (35%), Positives = 133/234 (56%), Gaps = 8/234 (3%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREAE 65 +R+NKYI+++G+ SRR+++ YI++G VF+NGK+ + QVK D VKV G+L+E +E Sbjct: 1 MRINKYIAKAGLASRRKSEEYIKKGLVFVNGKKLDDLSYQVKENDQVKVMGKLLEIKEK- 59 Query: 66 DLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVN 124 LNKP+G +S+ D + ++ V R F GRLDKDS GL+ +TN G + N Sbjct: 60 --FYYKLNKPIGFISSNYDPHNKKDLNSLVKIDHRFFCAGRLDKDSHGLMLITNDGKITN 117 Query: 125 KILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI---LGTVTKKCKVKKEAPFVFRITL 181 K++ EK Y+V VDK + ++ G+ + T K + E ++ + + Sbjct: 118 KLIHPSKKIEKTYIVKVDKLLNKDDEALFRKGIKLSVNEKTSDAKINLIDENSKIYEVII 177 Query: 182 VQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 QG NRQ+RRM +FG +V L+R +I + L + G+++ L EL L L Sbjct: 178 HQGFNRQVRRMFLYFGSKVIDLKRIKIGQIELGKLEDGKYKKLNKKELEYLESL 231 >UniRef50_A1U6Q2 Pseudouridine synthase n=4 Tax=Gammaproteobacteria RepID=A1U6Q2_MARAV Length = 231 Score = 232 bits (592), Expect = 1e-59, Method: Composition-based stats. Identities = 65/231 (28%), Positives = 116/231 (50%), Gaps = 9/231 (3%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIG-DQVKPGDVVKVNGQLIEPREAE 65 +RL++Y+S SR+EA + + G V ++G+ QV+ V ++G+ + P Sbjct: 1 MRLDQYLSNGTELSRKEAKKVVSAGRVKVDGETCRQANRQVEAEQSVHLDGKPVNP---P 57 Query: 66 DLVLIALNKPVGIVSTTEDGERDNIVDFVNH--SKRVFPIGRLDKDSQGLIFLTNHGDLV 123 + + ++KP G++S T D + +D + + RV GRLDKD+ GL+ LT+ G Sbjct: 58 GDIYLMMHKPAGVLSATTDSSQPTALDLLPRGLASRVHIAGRLDKDTTGLLLLTSDGQWS 117 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTV--TKKCKVKKEAPFVFRITL 181 + + + K Y V + + I E+ R + GV + G T+ +V+ + +T+ Sbjct: 118 HAVTSPRRECRKSYRVWLAEAIPEQACRALEKGVMLNGETTETRPAEVRVHNNQLIDLTI 177 Query: 182 VQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSG-IPLGEWRDLTDDELID 231 +G Q++RM G V+ L R RI ++ L + GE+R LT E+ Sbjct: 178 GEGRYHQVKRMLAAVGNRVEALHRFRIGSIELDDKLAPGEFRALTYQEIRS 228 >UniRef50_C2KV26 Pseudouridylate synthase n=1 Tax=Oribacterium sinus F0268 RepID=C2KV26_9FIRM Length = 239 Score = 232 bits (592), Expect = 1e-59, Method: Composition-based stats. Identities = 76/239 (31%), Positives = 126/239 (52%), Gaps = 13/239 (5%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREAE 65 +RL+KY+S+ G+ SR R I +G V +NG+ +V+PG+ V EP E Sbjct: 1 MRLDKYLSDMGVESRSVLKREIRKGLVKINGEIVKDPSMEVQPGNSEIVYKD--EPIHYE 58 Query: 66 DLVLIALNKPVGIVSTTEDGERDNIVDFV--NHSKRVFPIGRLDKDSQGLIFLTNHGDLV 123 + +NKPVG++S+TED ++ ++D H K +FP+GRLDKDS+GL+ + N G L Sbjct: 59 EFSYYMMNKPVGVLSSTEDRKQKTVLDLFSDKHRKDLFPVGRLDKDSEGLLLIMNDGALA 118 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPIL-GTVTKKCKVK----KEAPFVFR 178 +K+L EK+YLV + I+EE + + G+ + K + E Sbjct: 119 HKLLSPKMHIEKKYLVEIPGKISEEELDRLRQGIQYDTDLIAMPAKARCLSSTEEGSRVE 178 Query: 179 ITLVQGLNRQIRRMCEHF--GYEVKKLERTRIMNVSLSG-IPLGEWRDLTDDELIDLFK 234 + +++G QI++M Y V KL+R + + L + GE+R L+++E+ L Sbjct: 179 VIIMEGKFHQIKKMFLALSTDYVVTKLQRLSMGPLHLDPALAPGEYRKLSEEEVQALKN 237 >UniRef50_Q1J642 Pseudouridine synthase n=51 Tax=Streptococcus RepID=Q1J642_STRPF Length = 244 Score = 232 bits (592), Expect = 1e-59, Method: Composition-based stats. Identities = 70/245 (28%), Positives = 124/245 (50%), Gaps = 15/245 (6%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIG-DQVKP-GDVVKVNGQLIEPREA 64 +RL+K++ +G+ +R + +++ +F+N K T + D+V G + Sbjct: 2 MRLDKFLVATGVGTRSQVKLLLKKKAIFVNQKVETSAKAHIDEYKDLVTYQGTPLVY--- 58 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKR---VFPIGRLDKDSQGLIFLTNHGD 121 E V LNKP G VS T+D ++ +++ ++ + R VFP+GRLDKD++GL+ LTN+G Sbjct: 59 ESFVYYLLNKPSGYVSATQDRQQATVMELLDDTARQKTVFPVGRLDKDTRGLLLLTNNGQ 118 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK------KEAPF 175 L + +L KEYL V +TE + G+ + ++ ++ Sbjct: 119 LAHDLLSPKKHVTKEYLAKVAGIMTEADKDYFARGISLKDHQCLPAHLEVLASDLQQQTS 178 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDLFK 234 + +IT+ +G Q++RM G EV L+R + + L + GE+R LT +EL L Sbjct: 179 LVKITIQEGKFHQVKRMVAACGKEVLDLQRLSMGPLKLDPSLAEGEFRRLTPEELQSLAP 238 Query: 235 LIENS 239 ++S Sbjct: 239 YCQSS 243 >UniRef50_Q47QM5 Pseudouridine synthase n=3 Tax=Actinomycetales RepID=Q47QM5_THEFY Length = 375 Score = 232 bits (591), Expect = 1e-59, Method: Composition-based stats. Identities = 76/243 (31%), Positives = 121/243 (49%), Gaps = 13/243 (5%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATI-GDQVKPG-DVVKVNGQLIEPR 62 +RL K ++++G+ SRR + I G V ++G+ G +V P ++V+G + Sbjct: 133 GGIRLQKALAQAGVASRRACEELIAAGRVSVDGQIVRRFGARVDPEKSEIRVDGMRV--V 190 Query: 63 EAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFV----NHSKRVFPIGRLDKDSQGLIFLT 117 +++L ALNKP G+VST D E R I D+ +R+F +GRLD D++GLI LT Sbjct: 191 TSQNLRYYALNKPRGVVSTMFDPEGRPTIGDYAAQIGPIEERLFHVGRLDTDTEGLILLT 250 Query: 118 NHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPF-- 175 N G+L N++ K YL V P+ + IR + GV + K + Sbjct: 251 NDGELANRLTHPRYKVTKTYLAKVPGPVPRDVIRQIRKGVELDDGFVKVDSFRVIDNIEP 310 Query: 176 --VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF 233 + I L +G +RR+ + G+ V L RT+I V L+ + G R LT E+ +L+ Sbjct: 311 KALVEIRLHEGRKHIVRRLMKAVGHPVSDLARTQIGPVGLNNLKSGTIRALTSQEVSELY 370 Query: 234 KLI 236 Sbjct: 371 TAA 373 >UniRef50_A7HC79 Pseudouridine synthase n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HC79_ANADF Length = 354 Score = 232 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 77/294 (26%), Positives = 136/294 (46%), Gaps = 10/294 (3%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEPR 62 VRL KY++E+G+ SRR+A+ I G V +N + T +G +V P D+V V+G+L+ Sbjct: 10 DGVRLQKYLAEAGVASRRKAEELILAGRVKVNARAVTVLGSKVDPARDLVTVDGRLVS-- 67 Query: 63 EAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTNHG 120 +E L KP G V+T D E R ++++ +RVF +GRLD D++G + T+ G Sbjct: 68 RSETRSYYLLYKPPGCVTTASDPEGRPTALEYLRGVKERVFSVGRLDFDAEGAVLFTDDG 127 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKV----KKEAPFV 176 +L N++ H + YLV V + + AGV + + + + E Sbjct: 128 ELANRLAHPRYGHRRTYLVKVRGEPPPAALERLVAGVRLEDGPARALEAVPHERAERNVW 187 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLI 236 R+ + +G ++R+CE G +V++L R +++ G+ G++R L E+ L + Sbjct: 188 IRVVVGEGRFHLVKRLCEAVGLQVQRLYRPEFGGITVEGLRPGQFRPLAPVEVRALKTAV 247 Query: 237 ENSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKGR 290 + + P+ A R G+ G++ R Sbjct: 248 GLAGGAPAVAPRELPRAARRHGHGPPAPPELAPARREGERGEPGRREGKELPPR 301 >UniRef50_B9XS61 Pseudouridine synthase n=1 Tax=bacterium Ellin514 RepID=B9XS61_9BACT Length = 235 Score = 232 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 76/235 (32%), Positives = 125/235 (53%), Gaps = 11/235 (4%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKP-GDVVKVNGQLIEPREA 64 VRL K+++E+G+ SRR ++R I G V +NG +G +V P D + ++G P Sbjct: 2 VRLQKFLAEAGVASRRASERIILGGRVSVNGDTVRELGTKVDPIHDSIALDG---APLRL 58 Query: 65 EDLVLIALNKPVGIVSTT-EDGERDNIVDFVN-HSKRVFPIGRLDKDSQGLIFLTNHGDL 122 + + +ALNKP G V + +D +R I D + ++ +GRLD DS+GLIFLTN G+ Sbjct: 59 KRKLYVALNKPRGYVCSRKDDRKRKVIGDLLPAEWDNLYSVGRLDSDSEGLIFLTNDGEF 118 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK----KEAPFVFR 178 + K+YL TV+ + +E ++ G+ G K + + + + + Sbjct: 119 SLHLTHPRYRVLKKYLATVEGRVEQEMLQRFKHGIVHEGEKLKVDRARTLSVQNSTSLVE 178 Query: 179 ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF 233 + L +G NR+IRR+ E G V +L R +I + L + G+WR LT+ E+ L Sbjct: 179 LELTEGKNREIRRLFESQGLTVSRLVRMQIGKIKLGELRSGKWRMLTEAEIKSLL 233 >UniRef50_B8DUD9 Pseudouridine synthase n=8 Tax=Bifidobacterium RepID=B8DUD9_BIFA0 Length = 257 Score = 231 bits (590), Expect = 2e-59, Method: Composition-based stats. Identities = 76/241 (31%), Positives = 126/241 (52%), Gaps = 11/241 (4%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEPR 62 +RL K ++++G SRR+ + I G V ++G+ T +G +V P V+V+G I R Sbjct: 17 DGIRLQKLLAQAGFGSRRKCEEMITDGRVEVDGELVTELGTRVDPKRQQVRVDGSRI--R 74 Query: 63 EAEDLVLIALNKPVGIVSTTEDG-ERDNIVDFV-NHSKRVFPIGRLDKDSQGLIFLTNHG 120 + +ALNKP ++ST +D R + D V + +R+F +GRLD DS+GLI +TN G Sbjct: 75 LNPRHITLALNKPRKVLSTMDDPKGRYTLRDIVGDKYERIFHMGRLDYDSEGLILMTNDG 134 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGM-SAGVPILGTVTKKCKVKKEAP----F 175 +L ++ + EK Y+ T++ ++ R + GV + K Sbjct: 135 ELSQHVMHPKYEVEKTYIATLEGHMSGTVCRRLVRTGVQLDDGWIKLDHCSIIDSNRDQT 194 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 + ++ L G NR +RR+ G+ VK+L RT+I + L I G +R L+ DE+ L K Sbjct: 195 IVKVVLHSGRNRIVRRIFGAIGFPVKRLVRTQIGPIKLGDIKSGSYRVLSQDEVRALSKE 254 Query: 236 I 236 + Sbjct: 255 V 255 >UniRef50_Q5F8V3 Pseudouridine synthase n=21 Tax=Proteobacteria RepID=Q5F8V3_NEIG1 Length = 350 Score = 231 bits (590), Expect = 2e-59, Method: Composition-based stats. Identities = 78/255 (30%), Positives = 130/255 (50%), Gaps = 10/255 (3%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREA 64 RL K ++ SG+ SRRE + +I G V +NGK A +GD+V P D V V G +I+ + A Sbjct: 96 EPERLQKVLAASGVGSRREMEEWINNGWVTVNGKTAQLGDKVTPDDHVTVKGSIIKLKWA 155 Query: 65 EDL-VLIALNKPVGIVSTTEDGE-RDNIVDFVNH--SKRVFPIGRLDKDSQGLIFLTNHG 120 + L +I K G + + +D + R +I D + S R IGRLD ++ GL+ LT G Sbjct: 156 DRLPRIILYYKQEGEIVSRDDPQGRVSIFDRLPQAASSRWVAIGRLDINTSGLLILTTSG 215 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGM-SAGVPILGTVTKKCKV----KKEAPF 175 +LV + + E+EY V V +T E +R + GV + + K ++ + A Sbjct: 216 ELVQRFAHPSFEVEREYAVRVLGGLTTEQMRSLTEEGVMLEDGLAKVERIYEQGGEGANK 275 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSG-IPLGEWRDLTDDELIDLFK 234 + I + +G NR++RR+ E G V +L R + L + G++ +L E+ ++ K Sbjct: 276 WYNIVIKEGRNREVRRIFESQGLTVSRLVRVAFGPIGLPNRLKRGQFYELNPAEVANILK 335 Query: 235 LIENSSSEVKPKAKA 249 + + + KA Sbjct: 336 WADMLLPGERRRKKA 350 >UniRef50_Q1YVK2 Pseudouridine synthase n=3 Tax=Gammaproteobacteria RepID=Q1YVK2_9GAMM Length = 235 Score = 231 bits (590), Expect = 2e-59, Method: Composition-based stats. Identities = 67/233 (28%), Positives = 119/233 (51%), Gaps = 9/233 (3%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIG-DQVKPGDVVKVNGQLIEPREAE 65 +RL+KYIS + SR E RYI+ G+V ++ ++A G +V + + + G I E Sbjct: 2 LRLDKYISNATDLSRVEVKRYIKYGDVTIDDEKAINGAQKVSGDETICIEGSAISFAENR 61 Query: 66 DLVLIALNKPVGIVSTTEDGERDNIVDFV--NHSKRVFPIGRLDKDSQGLIFLTNHGDLV 123 LNKP G+VS T+D +D + + S + GRLD D+ GL+ +T+ G Sbjct: 62 ---YFMLNKPAGVVSATKDSNNSTALDLIFEHRSDELQIAGRLDIDTTGLLLITDDGQWN 118 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGT--VTKKCKVKKEAPFVFRITL 181 +++ +D +K Y VT+ PIT ++ ++ GV + G +++ +++ Sbjct: 119 HRLTSPRSDCQKIYRVTLGIPITPDYAEKLANGVWLKGEKHPCLPATMEQIDDETVLLSI 178 Query: 182 VQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSG-IPLGEWRDLTDDELIDLF 233 +G Q++RM G V+ L RT++ + L + G++R LTD E+ + Sbjct: 179 AEGKYHQVKRMFAALGNHVEALHRTQVGGIILDESLEPGDYRALTDAEVASIM 231 >UniRef50_C7PP04 Pseudouridine synthase n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PP04_CHIPD Length = 516 Score = 231 bits (589), Expect = 3e-59, Method: Composition-based stats. Identities = 83/240 (34%), Positives = 136/240 (56%), Gaps = 11/240 (4%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPRE 63 + LNKYI+ SG+CSRR+A ++++G V +NG+ T +V D V +N + I + Sbjct: 278 GEMPLNKYIAHSGLCSRRKAVDFVKEGKVTVNGELITEPAFKVTAKDEVAINNRKINIQ- 336 Query: 64 AEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHS----KRVFPIGRLDKDSQGLIFLTN 118 ++LV I LNKP G ++TT+D E R +++ + + +RV+P+GRLD+++ GL+ LTN Sbjct: 337 -KNLVYILLNKPKGYITTTDDPEGRKTVMELIQDATTEEQRVYPVGRLDRNTSGLLLLTN 395 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKC---KVKKEAPF 175 G+L K+ ++ +K Y V ++KP+T+ + GV + V V+ Sbjct: 396 DGELAQKLAHPKHNIKKIYHVGLNKPLTKAHFENILQGVTLEDGVANVDALGYVEAGDKT 455 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 I + G NR +RR+ EH YEV+KL+R ++ I G+WR LT+ E+I L Sbjct: 456 QVGIEIHSGKNRIVRRIFEHLEYEVEKLDRVTYAGLTKKNINRGKWRFLTEKEIILLKHF 515 >UniRef50_A3UFV9 Pseudouridine synthase n=1 Tax=Oceanicaulis alexandrii HTCC2633 RepID=A3UFV9_9RHOB Length = 354 Score = 231 bits (589), Expect = 3e-59, Method: Composition-based stats. Identities = 80/287 (27%), Positives = 135/287 (47%), Gaps = 15/287 (5%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEP 61 + R+ K ++ +GI SRREA+R IE+G V +NG+ T +V GD V+V+G+ I Sbjct: 13 EEGGERIAKVLAHAGIASRREAERLIEKGRVSVNGEILRTPAFKVMAGDDVRVDGESIGQ 72 Query: 62 REAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSK-RVFPIGRLDKDSQGLIFLTNH 119 R + +KPVG+++T D + RD + + RV +GRLD +S+GL+ LTN Sbjct: 73 RPPTR--VWRYHKPVGLLTTHSDPQGRDTVFQTLPQDMGRVISVGRLDLNSEGLLLLTND 130 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKV----KKEAPF 175 G+L + + Y V +++ + + G + G V +V + A Sbjct: 131 GELARVLELPSTGWTRRYRVRAYGNASDKALAELENGTVVDGVVYGPVEVTVDRRTGANV 190 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRD----LTDDELID 231 + + +G NR++R++ + G V +L R L + GE + + D+L Sbjct: 191 WLTVGIKEGKNREVRKVLQSVGLTVNRLMRVAYGPFQLGSLKRGEISESKLSVLRDQLGK 250 Query: 232 LFKLIENSSSEVKPKAKAKPKT-AGIKRPVVKMEKTAEKGGRPASNG 277 L+ L + +KP AKP T G + K + +K G G Sbjct: 251 LYPLDTDGL-PLKPGETAKPDTRTGTAKAKPKANRPHQKSGGKPRAG 296 >UniRef50_A5CX60 Pseudouridine synthase n=1 Tax=Candidatus Vesicomyosocius okutanii HA RepID=A5CX60_VESOH Length = 241 Score = 230 bits (588), Expect = 3e-59, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 128/238 (53%), Gaps = 8/238 (3%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREA--E 65 RL K I+ +G SRR +R IEQG + +N K A IGD+ + +VK++G+ I + Sbjct: 4 RLQKLIANAGYGSRRWVERLIEQGRIEVNNKIAIIGDKTEITSLVKIDGRKINLSRYVEQ 63 Query: 66 DLVLIALNKPVGIVST-TEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVN 124 + +I LNK G++ + +D R ++ + R +GRLD ++ GL+ +TN+GDL N Sbjct: 64 ETKVIILNKQAGVICSNRDDKGRKSVYSLLPKESRWIMVGRLDLNTSGLLLVTNNGDLAN 123 Query: 125 KILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK----KEAPFVFRIT 180 K++ ++ ++EY V V + + ++ ++ GV +K ++ K A +++ Sbjct: 124 KLMHPSSEIDREYAVRVLGQVKNKDLKKLTQGVVFDDGFSKFNQITFSGGKGANRWYKVV 183 Query: 181 LVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDELIDLFKLIE 237 L +G R++RR+ E G++V +L R R + L + ++ L ++ LF +E Sbjct: 184 LREGKKREVRRLWEVLGFKVSRLIRIRFGEIRLPDNLKANQYDYLKTVQIKLLFNAVE 241 >UniRef50_C9LMF3 Ribosomal small subunit pseudouridine synthase A n=1 Tax=Dialister invisus DSM 15470 RepID=C9LMF3_9FIRM Length = 277 Score = 230 bits (588), Expect = 3e-59, Method: Composition-based stats. Identities = 71/263 (26%), Positives = 116/263 (44%), Gaps = 34/263 (12%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEP 61 + +RL+K++S+ + +R E R I +G V +NG++ T G V D + G+ + Sbjct: 14 EEDVMRLDKFLSDMNMGTRTELKRDIRKGAVQVNGEKITDPGFMVNENDEIIFAGEPVPY 73 Query: 62 REAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKR--VFPIGRLDKDSQGLIFLTNH 119 E LNKP G+++ TED + ++DF +R + P+GRLDKD+ GL+ +TN Sbjct: 74 FRYE---YYMLNKPAGVITATEDRYQKTVLDFFGERRRKDLSPVGRLDKDTVGLLLVTND 130 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVT--------------- 164 G +++L +KEY +D + E G+ + T Sbjct: 131 GGFHHRLLSPKKHIDKEYYARIDGRVDEADREKFEKGIYVDEIFTALPAKLMIDGYRENA 190 Query: 165 ------------KKCKVKKEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVS 212 + R+ + +G QI+RM G EV L+R RI +V Sbjct: 191 LESDFMDLANSRAPKSALENGVSEIRVVVQEGKFHQIKRMFHALGKEVIYLKRIRIGSVV 250 Query: 213 LS-GIPLGEWRDLTDDELIDLFK 234 L + G +R LT E+ L K Sbjct: 251 LDPTLEEGTYRRLTAGEVAALEK 273 >UniRef50_A6GNL7 Pseudouridine synthase n=2 Tax=Betaproteobacteria RepID=A6GNL7_9BURK Length = 458 Score = 230 bits (588), Expect = 3e-59, Method: Composition-based stats. Identities = 64/235 (27%), Positives = 129/235 (54%), Gaps = 9/235 (3%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPR 62 P+ + +L+K +++SG+ SRRE + I G V +N + A +G +V P D V+VNG+LI+ + Sbjct: 65 PELAPKLHKVLADSGMGSRREMEELIVAGRVSVNAEPAHLGQRVLPTDQVRVNGKLIQRK 124 Query: 63 -EAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH--SKRVFPIGRLDKDSQGLIFLTN 118 +++ ++ +KP G + + +D + R + + + + +GRLD +++GL+ T+ Sbjct: 125 NKSKPPRVLIYHKPAGEIVSMDDPQGRTTVFQKLPKISNGKWIAVGRLDFNTEGLLLFTS 184 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK----KEAP 174 G+L N+++ + ++EY V + ++EE + + G+ + K V + A Sbjct: 185 SGELANRLMHPRYEVQREYAVRILGELSEEQRQQLLTGIQLEDGPAKFLYVDAAGGEGAN 244 Query: 175 FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDE 228 +++ L +G NR++RRM E V +L RTR ++ + S + G ++ E Sbjct: 245 RWYKVGLKEGRNREVRRMFEACNLTVSRLIRTRFGDIMMPSTLKRGRHMEMEALE 299 >UniRef50_A9ITY6 Pseudouridine synthase n=6 Tax=Betaproteobacteria RepID=A9ITY6_BORPD Length = 588 Score = 230 bits (588), Expect = 4e-59, Method: Composition-based stats. Identities = 77/290 (26%), Positives = 140/290 (48%), Gaps = 15/290 (5%) Query: 4 DSSV-RLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLI-EP 61 D+++ +L+K ++++GI SRRE + I G V +NG+ A IG +V P D V+VNG+ + P Sbjct: 119 DAAMPKLHKVLADAGIGSRREMEELITAGRVSVNGEPAHIGQRVAPSDQVRVNGKPVARP 178 Query: 62 REAEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVN--HSKRVFPIGRLDKDSQGLIFLTN 118 + +I +KP G + + +D R ++ + + + +GRLD +++GL+ T Sbjct: 179 NTKKPPRVILYHKPAGEIVSHDDPGGRASVFARLPKLRTGKWLSVGRLDLNTEGLLIFTT 238 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK----KEAP 174 GD+ N+I+ E+EY V V + + + + G+ + + + Sbjct: 239 SGDMANRIMHPRYGTEREYAVRVLGEMDDATRKSLVEGIELEDGQAAFGALDYLGGDGSN 298 Query: 175 FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDLF 233 +R+TL +G NR++RRM E G V +L RTR ++ L + G W +L + L Sbjct: 299 RWYRVTLQEGRNREVRRMFESVGVTVSRLIRTRFGDLVLPRTLRRGRWEELDSSLVTALM 358 Query: 234 ---KLIENSSSEVKPKAKAKPKTAGIKRPV--VKMEKTAEKGGRPASNGK 278 L+ + + +P++ P M++ G R GK Sbjct: 359 VQLGLLRDDDDADGGRNARQPRSHDSALPPGFGTMDRNGMNGARIGRRGK 408 >UniRef50_Q1H048 Pseudouridine synthase n=4 Tax=Betaproteobacteria RepID=Q1H048_METFK Length = 383 Score = 230 bits (587), Expect = 4e-59, Method: Composition-based stats. Identities = 74/289 (25%), Positives = 138/289 (47%), Gaps = 12/289 (4%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIE-PREAED 66 RL+K ++ +G SRRE + I G + +NGK A +G V P DVV+++ + + P E E Sbjct: 30 RLHKLLALAGFGSRREMETLIASGRITINGKTAEVGASVVPSDVVRLDSRPLRLPFEPEL 89 Query: 67 LVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSK--RVFPIGRLDKDSQGLIFLTNHGDLV 123 ++ +KP G + + +D E R ++ D + + + IGRLD ++ GL+ T G+L Sbjct: 90 PQVLLYHKPEGEIVSHDDPENRASVFDKLPRIRNGKWIAIGRLDMNTSGLLIFTTSGELA 149 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKE----APFVFRI 179 N+ + + E+EY V + +TE + ++ G+ + ++ + A + + Sbjct: 150 NRFMHPRYEVEREYAVRIFGELTEGEMAQLTYGIELDDGPANFDSIRPQGGEGANHWYEV 209 Query: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSG-IPLGEWRDLTDDELIDLFKLIEN 238 L +G NR++RR+ E F V +L R R V+L + G+ L E+ L + E Sbjct: 210 ILREGRNREVRRLFEAFQKPVSRLIRVRFGPVNLPPRLKRGQMIHLGAKEVTALLEWAEL 269 Query: 239 SSSEVKPK---AKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPG 284 + + P+ + K K + P + + + + +R T Sbjct: 270 AVPKAVPRQLSPREKEKLGKVFTPKARKSRFDPEAHLESRGPRRVTKAR 318 >UniRef50_O32068 Uncharacterized RNA pseudouridine synthase ytzG n=68 Tax=Bacteria RepID=YTZG_BACSU Length = 239 Score = 230 bits (587), Expect = 5e-59, Method: Composition-based stats. Identities = 74/227 (32%), Positives = 118/227 (51%), Gaps = 14/227 (6%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEPREA 64 +RL+K ++ SG SR+E ++ G V ++GK A + + V P V V G+ ++ RE Sbjct: 1 MRLDKLLANSGYGSRKEVKAVVKAGAVMIDGKPAKDVKEHVDPDTQEVTVYGEPVDYRE- 59 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSK---RVFPIGRLDKDSQGLIFLTNHGD 121 + + +NKP G++S TED + +VD + + FP GRLDKD++G + LTN G Sbjct: 60 --FIYLMMNKPQGVLSATEDSRQQTVVDLLTPEEMRFEPFPAGRLDKDTEGFLLLTNDGQ 117 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGT-VTKKCKVK----KEAPFV 176 L +++L K Y V + I+ E I + GV I G TK K + V Sbjct: 118 LAHRLLSPKKHVPKTYEVHLKSQISREDISDLETGVYIEGGYKTKPAKAEIKTNDSGNTV 177 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSG-IPLGEWR 222 +T+ +G Q+++M + G EV L+R + VSL + GE+R Sbjct: 178 IYLTITEGKYHQVKQMAKAVGNEVVYLKRLSMGRVSLDPALAPGEYR 224 >UniRef50_Q0AS26 Pseudouridine synthase n=1 Tax=Maricaulis maris MCS10 RepID=Q0AS26_MARMM Length = 372 Score = 230 bits (586), Expect = 5e-59, Method: Composition-based stats. Identities = 80/289 (27%), Positives = 132/289 (45%), Gaps = 9/289 (3%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEPR 62 D+S R+ K+++ +G+ SRRE +R IE G V ++GK T +V + ++V+G+ IEP Sbjct: 6 DTSERIAKFLARAGVASRREVERMIEGGRVKVDGKTLDTPAFKVTGSEHIEVDGKRIEPP 65 Query: 63 EAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHS-KRVFPIGRLDKDSQGLIFLTNHG 120 A L +KP G+V+T D E R+ + D + RV IGRLD S+GL+ LTN G Sbjct: 66 AATK--LWRYHKPDGLVTTHADPEGRETVFDAIPKDIGRVISIGRLDLTSEGLLLLTNDG 123 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKE----APFV 176 L + + Y I+E ++ + AGV + G +V+ E + Sbjct: 124 ALARALELPSTGWTRRYRARAFGSISESALKILRAGVTVEGIKYGPMEVEVERETGSNIW 183 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLI 236 + + +G NR++R+ + G V +L R L + GE + + L D + Sbjct: 184 LEVGIREGKNREVRKALDAVGLRVNRLIRIAYGPFQLGQLEKGEIKSVPSRVLHDQCGHL 243 Query: 237 ENSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGR 285 + +A AKP+ A + + G R + P R Sbjct: 244 IDMGDTPTGQAIAKPRPANRAARKPGQKPDGKPGQRAMGGPGQPGLPKR 292 >UniRef50_UPI0001C37AA4 16s pseudouridylate synthase n=2 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37AA4 Length = 255 Score = 230 bits (586), Expect = 6e-59, Method: Composition-based stats. Identities = 75/240 (31%), Positives = 122/240 (50%), Gaps = 12/240 (5%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGD-QVKPG-DVVKVNGQLIEPREA 64 +RL+K+ISE +R + +G+V +NG D ++ G D V V G I + Sbjct: 4 IRLDKFISERTEYTRSQIKSLCAKGSVTVNGSPVKRSDTKIDTGADDVTVCGNAIS---S 60 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVN---HSKRVFPIGRLDKDSQGLIFLTNHGD 121 E I LNKP G VS+T+D + + ++ V SK +FP GRLDKDS G + +T+ G Sbjct: 61 ERFRYILLNKPKGYVSSTDDKDGETVIKLVPPEMRSKGLFPAGRLDKDSTGALLITDDGA 120 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI-LGTVTKKCKVKK--EAPFVFR 178 L ++I N K Y + +P +E++ + G+ + G CKV+K A + Sbjct: 121 LAHRICSPNNHISKIYAAELSRPFEQEYVEKFAKGIVLANGEACSPCKVQKAENADNLAF 180 Query: 179 ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDELIDLFKLIE 237 + L +G+ Q++RM G V+ L+R I + L +PLG+ L ++ +F I+ Sbjct: 181 VELHEGMYHQVKRMFAAVGNHVENLKRISIGGLILPKDLPLGKCMYLLPKDIEQMFTKID 240 >UniRef50_Q2SRP5 Ribosomal large subunit pseudouridine synthase B n=3 Tax=Mollicutes RepID=Q2SRP5_MYCCT Length = 252 Score = 230 bits (586), Expect = 6e-59, Method: Composition-based stats. Identities = 63/251 (25%), Positives = 116/251 (46%), Gaps = 10/251 (3%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEPRE 63 S RL K IS G CSRR A++ I + V +N + +G ++ P + ++ +L+ Sbjct: 2 SLERLQKVISSRGYCSRRTAEKLILENRVKVNNQIINKLGVKIDPKAEIIIDNKLVTSDS 61 Query: 64 AEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTNHGD 121 KP +++T D + R + D+ + RV+P+GRLD D GL+ +TN G+ Sbjct: 62 NNQKYYYLFYKPRLVLTTMYDPKKRKTVADYFKDLNHRVYPVGRLDYDVSGLLIMTNDGE 121 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPF------ 175 L N I+ + K Y + ++ + + GV I K K + Sbjct: 122 LSNFIMHPKYEFLKTYQGLCQGQVNKQQVNQLIKGVYIDNNYLTKAYSSKLIKYDKLKNV 181 Query: 176 -VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFK 234 + +T+ +G +++M E ++ KL+RTRI + + + G++R+L E+ L+ Sbjct: 182 SIVELTINEGKKHHVKKMFESIQAQLLKLKRTRIEFLEIDNLKPGQYRELKVHEIKKLYG 241 Query: 235 LIENSSSEVKP 245 + + K Sbjct: 242 IYHSLKQNNKK 252 >UniRef50_C6VP86 Pseudouridine synthase n=4 Tax=Lactobacillaceae RepID=C6VP86_LACPJ Length = 246 Score = 229 bits (585), Expect = 7e-59, Method: Composition-based stats. Identities = 67/240 (27%), Positives = 118/240 (49%), Gaps = 16/240 (6%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIG-DQVKPG-DVVKVNGQLIEPREA 64 +R++K++ I +R + R I+ G++ NG+ G Q+ PG D V ++ + ++ Sbjct: 1 MRVDKFLHAMRIGTRTQVRRLIKDGHITANGEPVISGKQQINPGSDTVFLDDVQVRYQQ- 59 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFV---NHSKRVFPIGRLDKDSQGLIFLTNHGD 121 +NKPVG+++ T D ++D + +FP+GRLDKD++G++ +TN G Sbjct: 60 --YFYYVMNKPVGVITATTDSAAKTVMDLFNTTDFRDDLFPVGRLDKDTEGILVITNDGA 117 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI-LGTVTKKCKV------KKEAP 174 L + +L + K Y V IT + + G+ + GT + + + E Sbjct: 118 LSHDLLSPNHHVTKVYEAEVTGEITAAQLANFNDGITLKDGTELQPAQAEIVQFHEIENF 177 Query: 175 FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDLF 233 RI + +G Q++RM G V L R + +++L G+ G +R LTDDEL L Sbjct: 178 TTIRIMIHEGKYHQVKRMVGTLGERVVGLRRIKFGSLTLPVGLLAGNYRALTDDELTALK 237 >UniRef50_C6XB83 RNA-binding S4 domain protein n=2 Tax=Methylophilaceae RepID=C6XB83_METSD Length = 455 Score = 229 bits (585), Expect = 7e-59, Method: Composition-based stats. Identities = 86/239 (35%), Positives = 129/239 (53%), Gaps = 20/239 (8%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEPREAED 66 RL+K ++E G+CSRREAD +I G V +NG+ +G +V+P ++V+ + + + Sbjct: 217 RLSKRMAELGLCSRREADEWIVNGWVRVNGQVVDELGSRVEPDANIEVSKE--AEKHQSE 274 Query: 67 LVLIALNKPVGIVS-TTEDGERDNIVDFVNHS----------------KRVFPIGRLDKD 109 +V I L+KPVG VS EDG +V + K + P GRLD D Sbjct: 275 IVTILLHKPVGYVSGQAEDGYEPAVVLVHPDNHWAEDPVQKEFRRGFLKGLAPAGRLDID 334 Query: 110 SQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKV 169 S GL+ LT G + +++ + EKEYLV V+ +++E +R ++ G+ + G K KV Sbjct: 335 STGLLVLTQDGRVARQLIGEDSQTEKEYLVRVEGTLSDEGLRKLNHGLSLDGVQLKPAKV 394 Query: 170 KKEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDE 228 + R L +G RQIRRMCE G V L+R RI +V+L +P G+WR L E Sbjct: 395 SWQNEDQLRFVLREGRKRQIRRMCELVGLHVVGLKRVRIGSVALGKLPPGQWRYLRPGE 453 >UniRef50_D0J9Y2 Pseudouridine synthase n=1 Tax=Blattabacterium sp. (Periplaneta americana) str. BPLAN RepID=D0J9Y2_BLASP Length = 255 Score = 229 bits (585), Expect = 8e-59, Method: Composition-based stats. Identities = 75/232 (32%), Positives = 125/232 (53%), Gaps = 8/232 (3%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATI-GDQVKPGDVVKVNGQLIEP 61 + +RLN Y+S +GI SRREAD+ I+ G + +NGK T G V DV+K +G I+ Sbjct: 12 EEKFIRLNHYLSNAGITSRREADKLIQSGLIEVNGKIVTKFGTVVHKNDVIKFHGSRIK- 70 Query: 62 REAEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHSK--RVFPIGRLDKDSQGLIFLTN 118 + + I LNKP G +++T D R +++ + + + R++P+GRLD+ + G++ LTN Sbjct: 71 --NKKKIYILLNKPKGYITSTRDPFNRKTVMNLIPNFQNYRIYPVGRLDRLTTGVLLLTN 128 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAG-VPILGTVTKKCKVKKEAPFVF 177 G + K+ +K YLV ++K I + + + G + + K + K A + Sbjct: 129 DGFITEKLTHPKYKIQKIYLVVLNKTIHYQDLDKIRQGKIYLNEGRVKIDFLHKYAKNIV 188 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDEL 229 +I L G NR IRR+ + Y+V KLER + + +G W L+ E+ Sbjct: 189 KIGLHIGWNRVIRRIFKKLTYQVIKLERIHFGGFTNKNLKIGSWCFLSKQEV 240 >UniRef50_D1B9Q8 Pseudouridine synthase n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B9Q8_THEAS Length = 234 Score = 229 bits (585), Expect = 9e-59, Method: Composition-based stats. Identities = 77/217 (35%), Positives = 117/217 (53%), Gaps = 7/217 (3%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREAE 65 +RLN+Y++ G+ SRR+ + I G V LNG + +G +V+ GD V+V+G + P Sbjct: 1 MRLNQYLARCGLGSRRKVEALIVTGRVKLNGLVVSDLGCRVEEGDHVEVDGCSVHPL--- 57 Query: 66 DLVLIALNKPVGIVSTTEDGERDNIVDFVN---HSKRVFPIGRLDKDSQGLIFLTNHGDL 122 D + I +NKP G+V ED ++D + + R FP+GRLDK+SQGL+ LTN GD Sbjct: 58 DKIYIVMNKPRGVVCAVEDRRYRTVLDLLPPQIRALRPFPVGRLDKESQGLLILTNDGDF 117 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLV 182 + IL K Y VTVD+ + E + + GV G + + V P R+ + Sbjct: 118 CDAILHPRRGIIKTYEVTVDRDVPSESLDRLKGGVWSDGEILEPLMVSLMGPRTVRVDIQ 177 Query: 183 QGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLG 219 +G R++RRM G++V L R RI + L + G Sbjct: 178 EGKKREVRRMMAALGFKVLSLLRRRIGKMELRRLRAG 214 >UniRef50_B9ZS86 Pseudouridine synthase n=2 Tax=Chromatiales RepID=B9ZS86_9GAMM Length = 318 Score = 229 bits (584), Expect = 9e-59, Method: Composition-based stats. Identities = 82/286 (28%), Positives = 136/286 (47%), Gaps = 12/286 (4%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAE 65 S R+ K ++ G+ SRRE + +IE+G V +N + A +GDQV P DV++V G++I E Sbjct: 2 SERVQKVLAARGLGSRREIEGWIERGEVKVNQRTAKLGDQVGPNDVIRVRGRVIHMAEHA 61 Query: 66 DLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSK--RVFPIGRLDKDSQGLIFLTNHGDL 122 + +KPVG + + D E R + + K R +GRLD ++ GL+ T G+L Sbjct: 62 HR-WLVYHKPVGEICSRSDPEGRKPVFASLPRLKGQRWVAVGRLDLNTSGLLLFTTDGEL 120 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKK----EAPFVFR 178 N+++ + E+EY V V + ++ R + GV + + +++ A F Sbjct: 121 ANRLMHPSHSLEREYAVRVLGEVPDDTRRMLLEGVELEDGPARFDVLEERGGDGANHWFH 180 Query: 179 ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDLFKLIE 237 + + +G NR +RR+ + G V +L R R V L G+ G RDL E+ L++ +E Sbjct: 181 VVVSEGRNRLVRRLWDAVGVTVSRLIRVRYGPVVLGRGLKTGASRDLEVREVEALYEAVE 240 Query: 238 NSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSP 283 E + + RP K G R+TS Sbjct: 241 LPVPESIRERGRRRGPGRNTRPARGKRG---KSGGRVREADRWTST 283 >UniRef50_A8G0B7 Pseudouridine synthase n=19 Tax=Shewanella RepID=A8G0B7_SHESH Length = 261 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 84/238 (35%), Positives = 131/238 (55%), Gaps = 11/238 (4%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVK---------PGDVVKVNG 56 +RL KY++ +G+CSRR A RYI G + + G++A D V +++ +G Sbjct: 22 KIRLAKYLALTGLCSRRAATRYIRDGLIMIEGRQANHIDTVTLIESPDGLICKELLLFDG 81 Query: 57 QLIEPREAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFL 116 +E E + LNK VG + D+++ + S R++P+GRLDKDS+GL+ L Sbjct: 82 MAVEGIEPKQ--YRMLNKCVGTDCRLLPDDSDSLLHLLPASPRLYPVGRLDKDSRGLLLL 139 Query: 117 TNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFV 176 TN G+L ++ H K Y V VD+P +EF++ M+ GV T C + + + Sbjct: 140 TNDGELTQHLMHPDFGHTKTYRVRVDRPYGDEFLQKMAQGVSYRDVTTLPCTMTRLSEDQ 199 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFK 234 F I L QGLNRQIRRM + G++V L+R +I + L + GE R+LT +E+ L + Sbjct: 200 FEIVLTQGLNRQIRRMSQALGFKVIDLKRVKIQTLMLEDLNEGEMRELTVEEIDKLKQ 257 >UniRef50_A0LG30 Pseudouridine synthase n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LG30_SYNFM Length = 250 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 81/246 (32%), Positives = 120/246 (48%), Gaps = 10/246 (4%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEPR 62 + VRL K ++++GI SRR A+ I QG V +NG T +G +V P D + V+ + Sbjct: 2 TKVRLQKVLAQAGIASRRGAEEVIRQGRVVVNGIVVTELGVKVDPHADRITVD--RVTIA 59 Query: 63 EAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHS-KRVFPIGRLDKDSQGLIFLTNHG 120 E V + L KP V+T D + R + DFV + R+FP+GRLD D++GL+ LTN G Sbjct: 60 MVESRVYLLLFKPRCCVTTARDPQGRKTVFDFVPDAGARLFPVGRLDFDAEGLLLLTNDG 119 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA----PFV 176 L N++ K Y V T + + GV + +T +V Sbjct: 120 LLANRLQHPRYGVTKTYEVAAMGHPTPAALDRLRTGVMLEEGMTAPAEVTVIGSSPRSTR 179 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLI 236 RI L QG NRQI+RM E G+ V ++R + L + G R L E+ L+KL+ Sbjct: 180 LRIVLHQGWNRQIKRMGEAVGHPVLSIKRVAFGPLKLGSLKPGGSRHLKSGEVELLYKLV 239 Query: 237 ENSSSE 242 + Sbjct: 240 HLDKEQ 245 >UniRef50_D2B9T7 Pseudouridine synthase n=18 Tax=Actinobacteria (class) RepID=D2B9T7_STRRD Length = 621 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 76/243 (31%), Positives = 127/243 (52%), Gaps = 11/243 (4%) Query: 2 LPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATI-GDQVKP-GDVVKVNGQLI 59 +PD VRL K ++++G+ SRR + I G V ++G+ G +V P V+ V+G+ + Sbjct: 380 VPD-GVRLQKVLAQAGVASRRACEDMIGDGRVTVDGQVVRRFGARVDPAKQVIHVDGKRL 438 Query: 60 EPREAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFV-NHSKRVFPIGRLDKDSQGLIFLT 117 DLV +A+NKP+G+VST D + R ++ DFV + ++R+F +GRLD +++GLI LT Sbjct: 439 PTM--PDLVYLAINKPIGVVSTMSDPDGRPSLADFVADRTERLFHVGRLDTETEGLILLT 496 Query: 118 NHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKV----KKEA 173 N G+L N++ +K+Y V I + R + G+ + + K + Sbjct: 497 NDGELANRLTHPSYGVQKKYWAKVPGRIERDLGRRLKKGIELEDGIAKADSFTLVQEHGQ 556 Query: 174 PFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF 233 + + L +G +RRM E G+ V L R V L + G R LT E+ +L+ Sbjct: 557 QALVEVVLHEGRKHIVRRMLEEVGHPVIDLARIEFGPVKLGRLKPGTVRALTVKEVGELY 616 Query: 234 KLI 236 + Sbjct: 617 AAV 619 >UniRef50_Q0F269 Pseudouridine synthase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F269_9PROT Length = 289 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 78/251 (31%), Positives = 124/251 (49%), Gaps = 11/251 (4%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEP 61 P + R+N+Y++ G+CSRREADR+I+ G V +NG+ G VK GD V V+ +L+EP Sbjct: 39 PGNPERINRYLAHCGLCSRREADRWIQAGRVSINGQLIEAPGVIVKSGDTVMVDDKLVEP 98 Query: 62 REAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHG 120 ++ I NKP G + + D + R I DF++ + V IGRLD D++GL+ LT+ G Sbjct: 99 QQGHT--YILYNKPKGQLCSRLDKKKRPLIYDFIDVAPNVQSIGRLDMDTEGLLMLTDDG 156 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKK------CKVKKEAP 174 L + +EY V + E + + G +G + Sbjct: 157 ALTRALTHPAAKVPREYRARVAGIVELETLAKLRRGGMDIGRGDTSDAWEVTVDSESAGH 216 Query: 175 FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDLF 233 I +++G R++RR E G+ V++L RTR + L +P G WR L E+ L Sbjct: 217 TWLNIIILRGRWREVRRTLEECGHPVRRLMRTRFGPIKLDEDMPKGTWRALNRGEIRKLR 276 Query: 234 KLIENSSSEVK 244 + N ++ Sbjct: 277 DRVINPDAKTD 287 >UniRef50_B4RM91 Pseudouridine synthase n=8 Tax=Betaproteobacteria RepID=B4RM91_NEIG2 Length = 416 Score = 228 bits (583), Expect = 1e-58, Method: Composition-based stats. Identities = 78/255 (30%), Positives = 130/255 (50%), Gaps = 10/255 (3%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREA 64 RL K ++ SG+ SRRE + +I G V +NGK A +GD+V P D V V G +I+ + A Sbjct: 162 EPERLQKVLAASGVGSRREMEEWINNGWVTVNGKTAQLGDKVTPDDHVTVKGSIIKLKWA 221 Query: 65 EDL-VLIALNKPVGIVSTTEDGE-RDNIVDFVNH--SKRVFPIGRLDKDSQGLIFLTNHG 120 + L +I K G + + +D + R +I D + S R IGRLD ++ GL+ LT G Sbjct: 222 DRLPRIILYYKQEGEIVSRDDPQGRVSIFDRLPQAASSRWVAIGRLDINTSGLLILTTSG 281 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGM-SAGVPILGTVTKKCKV----KKEAPF 175 +LV + + E+EY V V +T E +R + GV + + K ++ + A Sbjct: 282 ELVQRFAHPSFEVEREYAVRVLGGLTTEQMRSLTEEGVMLEDGLAKVERIYEQGGEGANK 341 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSG-IPLGEWRDLTDDELIDLFK 234 + I + +G NR++RR+ E G V +L R + L + G++ +L E+ ++ K Sbjct: 342 WYNIVIKEGRNREVRRIFESQGLTVSRLVRVAFGPIGLPNRLKRGQFYELNPAEVANILK 401 Query: 235 LIENSSSEVKPKAKA 249 + + + KA Sbjct: 402 WADMLLPGERRRKKA 416 >UniRef50_C7NBL1 Pseudouridine synthase n=3 Tax=Leptotrichia RepID=C7NBL1_LEPBD Length = 252 Score = 228 bits (583), Expect = 1e-58, Method: Composition-based stats. Identities = 75/255 (29%), Positives = 125/255 (49%), Gaps = 30/255 (11%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGD-QVKPG-DVVKVNGQLIEPREA 64 +RL+K+++ SGI +R+E ++ V +N G V D+VK ++I Sbjct: 1 MRLDKFLANSGIGTRKEVKEILKNKKVSVNNVFVKDGKIHVDEEKDIVKYENKIINY--- 57 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKR---VFPIGRLDKDSQGLIFLTNHGD 121 + V I +NKP G++S TED ++D +N R +FP+GRLD D++GLI LTN G Sbjct: 58 KPFVYIMMNKPAGVISATEDSHHKTVIDLLNDEYRTYDIFPVGRLDIDTEGLILLTNDGI 117 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI-LGTVTKKCKVKKEAPF----- 175 L + +L +K+Y V + K ++E+ I+ + G+ + +TK KV+ Sbjct: 118 LSHNLLSPKKHVDKKYYVKITKSLSEDDIKTLENGIKLEENFITKNAKVEIICNNSEKES 177 Query: 176 ---------------VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIM-NVSLSGIPLG 219 IT+ +G Q++RM + G EV L+R ++ + + LG Sbjct: 178 EDFDFGENENNKNENSVYITISEGKFHQVKRMFKAVGNEVLYLKRVKMGNLLLDENLELG 237 Query: 220 EWRDLTDDELIDLFK 234 +R+LT EL L Sbjct: 238 GYRELTQKELNGLRN 252 >UniRef50_B0RHF4 Pseudouridine synthase n=3 Tax=Actinobacteria (class) RepID=B0RHF4_CLAMS Length = 291 Score = 228 bits (583), Expect = 1e-58, Method: Composition-based stats. Identities = 77/251 (30%), Positives = 127/251 (50%), Gaps = 10/251 (3%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIE 60 P + VRL K ++ +G+ SRR + I G V +NG+ T G ++ P D V V+ Q ++ Sbjct: 21 PVAGVRLQKVMAAAGVASRRVCEDMIAAGRVTVNGETVTEPGRRIDPDVDEVAVDDQAVQ 80 Query: 61 PREAEDLVLIALNKPVGIVSTTED--GERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTN 118 ++ + LNKPVGI S+ D G D +R+F +GRLD ++ GL+ LTN Sbjct: 81 LDTSKR--YLMLNKPVGIYSSLRDERGRPDLREFTEEFEERLFNVGRLDAETSGLLILTN 138 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAP---- 174 GDL + + K Y+ V +T + I+ ++ GV + + + + + Sbjct: 139 DGDLAHVLAHPSFGVLKTYIAKVTGRVTPQTIQRLTQGVDLEDGPIQADRARILSGGGDQ 198 Query: 175 FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFK 234 + ITL G NR +RRM + G+ V++L R + + L + +G RDLT DEL L Sbjct: 199 TLVEITLHSGRNRIVRRMLDEVGHPVEELVRRQFGPLHLGSLGVGRVRDLTSDELGQLLT 258 Query: 235 LIENSSSEVKP 245 + + ++ P Sbjct: 259 ISREARAQAGP 269 >UniRef50_A6DF49 Pseudouridine synthase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DF49_9BACT Length = 236 Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats. Identities = 77/237 (32%), Positives = 129/237 (54%), Gaps = 11/237 (4%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVK-PGDVVKVNGQLIEPREA 64 +R+ K+I+ G+CSRR+A+ + +G++ +N R T + QV D V+ + + Sbjct: 1 MRIAKFIAACGVCSRRKAEELVNEGHITINNHRVTELSTQVDVDNDEVRYRRKPLVL--- 57 Query: 65 EDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLV 123 E + LNKPVG V T +D +D + R++ +GRLDK S+GLI LTN GDL Sbjct: 58 EKKLYYLLNKPVGYVCTNDDPFAEKKAIDLLPDKGRLYTVGRLDKPSEGLIVLTNDGDLA 117 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGM-SAGVPILGTVTK--KCKVKKEAP--FVFR 178 + + EK+Y VTV ++++ + + G+ G + ++KK+ P ++ Sbjct: 118 KIMTHPSFELEKKYRVTVKGRVSQKKLDYLVRDGLTFEGVNYRVLDARIKKQVPGGYMIN 177 Query: 179 ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 TL +G NR+IR++C+ +VK+L R I ++L +P G WR +T E+ L L Sbjct: 178 FTLNEGKNREIRKICQSLDLQVKRLRRYEIAGIALGKLPPGAWRPMTQSEVRFLKSL 234 >UniRef50_A8U325 Pseudouridine synthase n=1 Tax=alpha proteobacterium BAL199 RepID=A8U325_9PROT Length = 387 Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats. Identities = 88/295 (29%), Positives = 136/295 (46%), Gaps = 14/295 (4%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPRE 63 S R++K ++ +G+CSRR+A+R+I +G V ++G T V V+ V+ + + E Sbjct: 7 GSERISKRLARAGLCSRRDAERWIAEGRVKVDGVMLTSPAVNVDDDSVILVDEKPLP--E 64 Query: 64 AEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHS-KRVFPIGRLDKDSQGLIFLTNHGD 121 E L +KP G+V++ D E R + D + RV +GRLD DS+GL+ LTN G Sbjct: 65 IEPPRLWRYHKPDGLVTSNRDPEGRSTVFDRLPKDLPRVVTVGRLDIDSEGLLLLTNDGG 124 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKE----APFVF 177 L + + Y V V P+ E + + GV I G +V + Sbjct: 125 LARYLELPSTGWVRRYRVRVFGPLDEAKLDNLKKGVRIEGVEYGPIEVTIDKATRTNSWL 184 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIE 237 + L +G NR+IRR+ EH G V +L RT L +P G ++ L D L + Sbjct: 185 TVALREGKNREIRRVMEHVGLTVSRLIRTTYGPFQLGEVPPGGVEEIKRRVLKDQLGLAK 244 Query: 238 NSSSEVKPKAKAKPKTAGIKRPVVKME--KTAEKGGRPASNGKRFTSPGRKKKGR 290 S AKAKP+ G + P + + K R +S GR ++ R Sbjct: 245 GDDS---GHAKAKPERTGTQPPGRRPGTLRLRSKPTDIEVESDRPSSGGRVQRTR 296 >UniRef50_A8SIK9 Pseudouridine synthase n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SIK9_9FIRM Length = 235 Score = 228 bits (581), Expect = 2e-58, Method: Composition-based stats. Identities = 68/237 (28%), Positives = 120/237 (50%), Gaps = 11/237 (4%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVK-PGDVVKVNGQLIEPRE 63 +R+++++ GI SR E +Y++ V LNGK QV D + + +++ +E Sbjct: 2 KIRIDRFLCHMGIGSRSEIKKYLKTCRVKLNGKFEKNSNTQVDIEKDEILFDDEIVIYKE 61 Query: 64 AEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSK---RVFPIGRLDKDSQGLIFLTNHG 120 + LNKP +S T D + ++D + +FP+GRLD D+ G + LTN G Sbjct: 62 ---FTYLMLNKPKDFISATFDTKLPTVLDLLEFPYSNMELFPVGRLDIDTTGFLILTNDG 118 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI--LGTVTKKCKVKKEAPFVFR 178 + K+Y VT+ I E I + G+ T+ KV+K + Sbjct: 119 KFSYNVTNPKKKVNKKYFVTLRDEIISEQIEKLENGIYFEKEDFTTENAKVEKISEKEIN 178 Query: 179 ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSG-IPLGEWRDLTDDELIDLFK 234 +T+ +G Q++RM E+ EV +L++ I N++L + LGE+R++T+ EL ++F+ Sbjct: 179 LTISEGKFHQVKRMLEYVENEVVELKKVCIGNLNLDDSLKLGEYREITNSELEEIFR 235 >UniRef50_UPI0001BC42E2 ribosomal small subunit pseudouridine synthase A n=3 Tax=Fusobacterium RepID=UPI0001BC42E2 Length = 235 Score = 228 bits (581), Expect = 2e-58, Method: Composition-based stats. Identities = 61/230 (26%), Positives = 115/230 (50%), Gaps = 8/230 (3%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQ--VKPGDVVKVNGQLIEPREA 64 +R++K++ E G+ SR+E ++ + +NG T + + D V + + +E Sbjct: 1 MRIDKFLVECGVGSRKEVKELLKSRKIRVNGLFITSPKENIEEEKDEVYYGEKKLSYQE- 59 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNH---SKRVFPIGRLDKDSQGLIFLTNHGD 121 L+K G V+ ED ++D + K + P+GRLDKD++GL+ TN G Sbjct: 60 --FRYYILHKKAGYVTALEDSREATVMDLLPEWVIKKDLAPVGRLDKDTEGLLLFTNDGK 117 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITL 181 L +++L + +K Y +++ ITEE + + GV I T K +K +T+ Sbjct: 118 LNHRLLSPKSHVDKTYHASLECDITEEALEKLREGVMIGEYKTLPAKAEKLEDRKIALTI 177 Query: 182 VQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELID 231 +G Q+++M E G +V L+R + L + LGE ++++ +++I Sbjct: 178 REGKFHQVKKMLEAVGNKVIYLKRISFGKLVLGDLELGEVKEVSLEDIIS 227 >UniRef50_Q15Q67 Pseudouridine synthase n=2 Tax=Bacteria RepID=Q15Q67_PSEA6 Length = 241 Score = 227 bits (580), Expect = 3e-58, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 119/227 (52%), Gaps = 12/227 (5%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREAED 66 RL++ +S G CSR+EA ++ V + G+ A +V P V+V+G+ ++ A D Sbjct: 15 RLDQLLSNLGYCSRKEARYLLKGKRVTVKGEFAKSPALKVDP-ATVRVDGEALD---APD 70 Query: 67 LVLIALNKPVGIVSTTEDGERDNIVDFVN-----HSKRVFPIGRLDKDSQGLIFLTNHGD 121 +L+ LNKP+G V + ++ E I D + + ++ +GRLDKD+ GLI +T+ Sbjct: 71 GILVMLNKPLGYVCSHDNNEGMRIYDLLPERWEFRNPKIVSVGRLDKDTSGLILVTDDTK 130 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTK--KCKVKKEAPFVFRI 179 LV+++ + +K Y V+VD P+ + I + GV + + K++ + V + Sbjct: 131 LVHQLTSPKHHVDKVYQVSVDCPLQSDIIDSFAKGVVLGEGAEQCLPAKIEIVSENVANV 190 Query: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTD 226 TL +G Q+RRM GY V+ L R++ L + GEW+ + Sbjct: 191 TLNEGKYHQVRRMFAACGYHVEALHRSQFGQYRLQDLAQGEWQTVAP 237 >UniRef50_B0SBU8 Pseudouridine synthase n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SBU8_LEPBA Length = 243 Score = 227 bits (579), Expect = 4e-58, Method: Composition-based stats. Identities = 68/242 (28%), Positives = 117/242 (48%), Gaps = 12/242 (4%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPRE 63 + RL+K + G +R + + I QGNV +NG G ++ D+V + + +E Sbjct: 2 AKERLDKVLGNYGFGTRSDVKKEIYQGNVKVNGLVVKDPGYKITLTDIVVYYDETLNRKE 61 Query: 64 AEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKR---VFPIGRLDKDSQGLIFLTNHG 120 +NK ++ TED ++D+++ R +FPIGRLDK+++GL+ T G Sbjct: 62 ---FYYFMMNKAPDCITATEDPREKTVMDYLSERHRNMNLFPIGRLDKETEGLLLFTTDG 118 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGT-VTKKCKV---KKEAPFV 176 L + + EKEY + P+T I +G+ + T ++ P + Sbjct: 119 TLAHYYTSPKHFVEKEYYAEISAPVTAFDISQFESGITLDDGYKTLPARLAIPDPSNPHI 178 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDLFKL 235 + L +G RQIRRM + G EV+ L+R ++ N+ L + +G +R+LT+ E L Sbjct: 179 ATVWLREGKYRQIRRMFQSLGKEVQYLKRVKMGNLELDRDLEVGSYRELTEAEEKILKTK 238 Query: 236 IE 237 I Sbjct: 239 IP 240 >UniRef50_Q9I5J6 Ribosomal small subunit pseudouridine synthase A n=25 Tax=Gammaproteobacteria RepID=RSUA_PSEAE Length = 230 Score = 227 bits (578), Expect = 5e-58, Method: Composition-based stats. Identities = 64/229 (27%), Positives = 118/229 (51%), Gaps = 8/229 (3%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQ-VKPGDVVKVNGQLIEPREAE 65 +RL+++++ SRR+A I G++ ++G+ G V+ V+++ +L++ + Sbjct: 1 MRLDRFLANLPELSRRDAQMLIAGGHLRVDGQVVRDGTHEVRVFSRVELDERLLQ--AGK 58 Query: 66 DLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKR--VFPIGRLDKDSQGLIFLTNHGDLV 123 L+KP+G VS T D + ++D R + GRLD ++ GL+ LTN G Sbjct: 59 PARYYMLHKPMGCVSATRDPQHPTVLDLFPEDLRDDLHIGGRLDYNTTGLMLLTNDGQWS 118 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGV--PILGTVTKKCKVKKEAPFVFRITL 181 ++ G+ +K Y V + PI + ++ +AG+ VT +++ P R+TL Sbjct: 119 RRLTLPGSRRDKVYYVETEAPIDQRYVDAFAAGLHFRFEDLVTLPAQLEPIGPRCARLTL 178 Query: 182 VQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSG-IPLGEWRDLTDDEL 229 +G Q++RM HF +V +L R R+ ++ L +P G WR L +E+ Sbjct: 179 HEGRYHQVKRMFGHFDNKVLRLHRERMGDICLDPQLPPGAWRPLNAEEI 227 >UniRef50_A1S9T3 Pseudouridine synthase n=1 Tax=Shewanella amazonensis SB2B RepID=A1S9T3_SHEAM Length = 254 Score = 227 bits (578), Expect = 5e-58, Method: Composition-based stats. Identities = 81/246 (32%), Positives = 130/246 (52%), Gaps = 12/246 (4%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAEDL 67 RL KY++E+G+ SRR A R IE G V ++G++A+ D+V + V V+G + P +A+ Sbjct: 11 RLCKYLAEAGVASRRGASRLIETGRVCIDGQQASHSDRVFDSNRVTVDGAPLCPAQAKA- 69 Query: 68 VLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNKIL 127 +KPVGI + +++ + R+FP GRLDKDS+GL+ LTN G+L +++ Sbjct: 70 -YFLYHKPVGIDCRLRAEDPHSLIHCLPGDLRLFPAGRLDKDSRGLLLLTNDGELTQRLM 128 Query: 128 RAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKV----------KKEAPFVF 177 H+K YL+T++K + I ++AG T+ C V + P Sbjct: 129 HPDFHHQKGYLITLNKAPQPDDIAAIAAGFDYGEGPTRPCVVEAAIDCGYATEDGNPRKL 188 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIE 237 R+ L +G RQIRR+ GY V L R I +++ + GE R LT EL L + ++ Sbjct: 189 RMRLTEGKKRQIRRLWRARGYRVLDLLRESIQQLNIGKLEQGEIRSLTASELRQLKRTLD 248 Query: 238 NSSSEV 243 + + Sbjct: 249 LPNEQD 254 >UniRef50_Q11U12 Pseudouridine synthase n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11U12_CYTH3 Length = 281 Score = 227 bits (578), Expect = 5e-58, Method: Composition-based stats. Identities = 87/230 (37%), Positives = 133/230 (57%), Gaps = 2/230 (0%) Query: 2 LPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEP 61 LP + + +N+++ + S+ +A + + VF+NG +A + V D + VNG++++ Sbjct: 54 LPYTFMNINEFLIKRFHISKDKASNMVLENQVFINGVKALQRNDVLKSDHIVVNGEVLQ- 112 Query: 62 REAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGD 121 E + A KP GI T +N++ + + V+P+GRLDK+S+GL+ LTN G Sbjct: 113 -EGRNFTYYAYYKPRGIECTLNAAIENNLLHTLPFGEHVYPVGRLDKESEGLLLLTNDGK 171 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITL 181 L I + N EKEYLV VDKP+T+E + +S+G+ I+G T+ +V FRI L Sbjct: 172 LYKDIAFSDNFKEKEYLVEVDKPLTDEAVEQLSSGIVIMGQKTRPARVSMVTEHSFRIIL 231 Query: 182 VQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELID 231 QGLNRQIRRMC YEV L+R RI ++ L + G +R LT E+ D Sbjct: 232 TQGLNRQIRRMCYKLRYEVTMLKRIRITSIELGDLKPGAYRVLTRAEIFD 281 >UniRef50_Q21JF0 Pseudouridine synthase n=2 Tax=Gammaproteobacteria RepID=Q21JF0_SACD2 Length = 242 Score = 227 bits (578), Expect = 5e-58, Method: Composition-based stats. Identities = 66/244 (27%), Positives = 118/244 (48%), Gaps = 21/244 (8%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREAE 65 +RL+K+I+ + SR E R I+ V ++ K T V + V+++G++IE + Sbjct: 1 MRLDKFIANNSSYSRTEVKRLIKNKTVCVDKKITTDPSFTVTNLNTVRIDGEIIEAIKP- 59 Query: 66 DLVLIALNKPVGIVSTTEDGERDNIVDFVN--------------HSKRVFPIGRLDKDSQ 111 + I LNKP G V +D +VD + ++ + GRLD D+ Sbjct: 60 --LYIMLNKPTGYVCANKDNIHSPVVDLITEQHARQSDQTPPKYRAQSLQIAGRLDVDTT 117 Query: 112 GLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTV--TKKCKV 169 GL+ LT++G+ +++ K Y V ++KP+ + I+ +S GV + G T V Sbjct: 118 GLVLLTDNGEWNHRVTSPNKACFKRYRVKLEKPLDDAAIKLLSEGVMLHGEKAATLPATV 177 Query: 170 KKEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDE 228 + + +++ +G Q++RM G V KL R I + L + G+WR LT++E Sbjct: 178 ELISNTEVLLSIQEGRFHQVKRMFVKVGTCVVKLHREAIGAIELDTNLKPGQWRHLTNEE 237 Query: 229 LIDL 232 + + Sbjct: 238 IEAI 241 >UniRef50_D0J8G4 Pseudouridine synthase, Rsu n=96 Tax=Bacteria RepID=D0J8G4_COMTE Length = 642 Score = 226 bits (577), Expect = 6e-58, Method: Composition-based stats. Identities = 91/250 (36%), Positives = 132/250 (52%), Gaps = 28/250 (11%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREA 64 +VR+NK I++ G+CSRREAD ++E G V +NG+ AT+G V PGD ++++ + E ++ Sbjct: 393 GAVRINKRIADMGMCSRREADEWVENGWVTVNGEVATMGQNVVPGDRIEIDQKAQERQDQ 452 Query: 65 EDLVLIALNKPVGIVS-TTEDGERDNIVDFVNHS----------------KRVFPIGRLD 107 + V I LNKP+G VS EDG +V N + K + P GRLD Sbjct: 453 Q--VTILLNKPMGYVSGQAEDGHEPAVVLITNENRWNEDRSKTRFNFSQLKGLAPCGRLD 510 Query: 108 KDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTV---------DKPITEEFIRGMSAGVP 158 DS GL+ LT G + +I+ ++ +KEYLV V EE + + G+ Sbjct: 511 IDSVGLLVLTQDGRVARQIIGEDSEVDKEYLVRVTFGDRDVDVQSVFPEEKLALLRHGLS 570 Query: 159 ILGTVTKKCKVKKEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPL 218 + K +V + P R L +G RQIRRMCE G +V L+R RI V+L +P Sbjct: 571 LDEQPLKPAQVDWQNPEQLRFVLTEGKKRQIRRMCEQVGLKVVGLKRIRIGGVTLGNLPT 630 Query: 219 GEWRDLTDDE 228 G+WR L E Sbjct: 631 GQWRYLAPHE 640 >UniRef50_A6LLC7 RNA-binding S4 domain protein n=1 Tax=Thermosipho melanesiensis BI429 RepID=A6LLC7_THEM4 Length = 230 Score = 226 bits (576), Expect = 8e-58, Method: Composition-based stats. Identities = 80/225 (35%), Positives = 123/225 (54%), Gaps = 10/225 (4%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGD-QVKPGDVVKVNGQLIEPREAE 65 +RL+K++S + + SR+E R I+ G V +NG+ T D +VK D+V VN I P Sbjct: 1 MRLDKFLSNAKVGSRKEVKRLIKFGIVKINGEIITNVDFKVKENDIVTVNNTPITPYHN- 59 Query: 66 DLVLIALNKPVGIVSTTEDGERDNIVDFVNHS--KRVFPIGRLDKDSQGLIFLTNHGDLV 123 V I NKP G S+ + ER NI +F++H + + GRLDKD +GL+ +TN G Sbjct: 60 --VYIIFNKPTGYTSSKSEFER-NIFEFIDHPYVENLHIAGRLDKDVEGLLLITNDGIFT 116 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI-LGTVTKKCKVKKEAPFVFRITLV 182 +KI + EKEY+V VDK I++E I+ G+ + GT K +K+ IT+ Sbjct: 117 HKITSPKSKIEKEYIVKVDKEISDEMIQKAKDGIVLKNGTRFKPAIIKRLKDNFISITIT 176 Query: 183 QGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSG--IPLGEWRDLT 225 +G +I+ + + G KK+ER RI + L + GEW ++ Sbjct: 177 EGKYHEIKLIVKFLGLSYKKIERIRIGKLKLEDFNLKRGEWSEID 221 >UniRef50_B1ZYG8 Pseudouridine synthase n=3 Tax=Verrucomicrobia RepID=B1ZYG8_OPITP Length = 266 Score = 226 bits (576), Expect = 9e-58, Method: Composition-based stats. Identities = 83/256 (32%), Positives = 131/256 (51%), Gaps = 12/256 (4%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPG-DVVKVNGQLIEPRE 63 +RL KY++++G+CSRR A+ I G V++NG A +G +V PG D V G+ + Sbjct: 5 EPIRLQKYLADAGVCSRRAAEALIASGEVWVNGAPAQVGQKVTPGVDRVTTGGKPVRT-T 63 Query: 64 AEDLVLIALNKPVGIVSTTEDGERD-NIVDFVNH---SKRVFPIGRLDKDSQGLIFLTNH 119 A+ V +A++KP G+V T ED I + R F GRLDKDS+GL+ LT Sbjct: 64 AQPRVTLAMHKPRGLVCTNEDPHNPETIFSVLPREFAKLRFFCAGRLDKDSEGLVILTTD 123 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFV--- 176 GDL ++++ N K Y VT++KP + + + GV G K + P V Sbjct: 124 GDLAHRLMHPSNLVVKRYHVTLEKPFPAKRLPLLVKGVIAQGERLKVERAALINPSVSHE 183 Query: 177 ---FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF 233 + + G R+IR + GY VK+L R +I L GIPL + ++ E+ LF Sbjct: 184 ATNLDVHMHHGKKREIRLLFTELGYPVKRLRRYQIGGFRLKGIPLRAMKKMSPAEIESLF 243 Query: 234 KLIENSSSEVKPKAKA 249 ++ + ++ A++ Sbjct: 244 RVPRTPHAAIEVTAES 259 >UniRef50_C9YDN9 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YDN9_9BURK Length = 282 Score = 226 bits (576), Expect = 9e-58, Method: Composition-based stats. Identities = 86/282 (30%), Positives = 128/282 (45%), Gaps = 62/282 (21%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAED 66 +RLNK +++ G+ SRREAD +I +G V +NGK A +G QV P ++++ Q + + Sbjct: 1 MRLNKRMADLGMASRREADEWIAKGWVKVNGKVAEMGMQVLPDVRIEIDKQAQGQQANQ- 59 Query: 67 LVLIALNKPVGIVSTTEDGERDNIVDFVNHSKR-----------------VFPIGRLDKD 109 V I LNKP+GIVS + + + + R + P GRLD D Sbjct: 60 -VTILLNKPLGIVSGQAEDGHEPAIKLIQPQNRWRDDNARFFFHGSQLKSLVPAGRLDID 118 Query: 110 SQGLIFLTNHGDLVNKILRAGNDHEKEYLVTV---------------------------- 141 S GL+ LT G + +++ + EKEYLV V Sbjct: 119 STGLLVLTQDGRVARQLIGEDSVMEKEYLVRVAYTGVENPGAANSPAATYPALAGRGKPQ 178 Query: 142 -------DKPIT--------EEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQGLN 186 D P+T E ++ + G+ + K KV+ + P R L +G Sbjct: 179 QLIRLDDDDPVTSDVQSVFPPEKLQLLRHGLILDDQRLKPAKVEWQNPEQLRFVLTEGKK 238 Query: 187 RQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDE 228 RQIRRMCE G +V L+R R+ V L +P+G+WR L E Sbjct: 239 RQIRRMCELVGLKVVGLKRVRVGKVMLGNLPVGQWRYLLPHE 280 >UniRef50_Q73PC4 Pseudouridine synthase n=1 Tax=Treponema denticola RepID=Q73PC4_TREDE Length = 234 Score = 225 bits (575), Expect = 1e-57, Method: Composition-based stats. Identities = 77/233 (33%), Positives = 122/233 (52%), Gaps = 6/233 (2%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPRE 63 +RL Y++ G+ SRR ++ I G V ++GK T +G +V + + ++G+ I P Sbjct: 3 DEIRLQVYLARCGVASRRASENLILNGRVSVDGKIITELGIKVSGKEKICLDGKQIFPEA 62 Query: 64 AEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVN--HSKRVFPIGRLDKDSQGLIFLTNHG 120 + I LNKP G V + D +R + +++R++ IGRLD S G I TN G Sbjct: 63 EKR--YILLNKPEGYVCSLADEKDRPIAASLLKDTYTERLYNIGRLDMLSGGAILFTNDG 120 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRIT 180 D K+ ++ EKEY V +E ++ GV I G K ++ + RI Sbjct: 121 DFSAKVEHPSSEIEKEYEVITVFEYPDEILQKFLRGVRIEGVFYKALSAERISKNKMRIV 180 Query: 181 LVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF 233 L++G NR+IRR+ + F ++KKL R RI V L+ +P G+ R LT +E+ L Sbjct: 181 LIEGKNREIRRVLKFFNIKIKKLTRVRIGCVYLADLPSGKHRPLTSEEIKGLL 233 >UniRef50_B1X5I1 Pseudouridine synthase, Rsu n=1 Tax=Paulinella chromatophora RepID=B1X5I1_PAUCH Length = 242 Score = 225 bits (575), Expect = 1e-57, Method: Composition-based stats. Identities = 75/234 (32%), Positives = 126/234 (53%), Gaps = 12/234 (5%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQ-VKPGDVVKVNGQLIEPREAED 66 RL K I+ SG CSRR+A++ + QG V +NG A +GD+ + D ++++G+ I R ++ Sbjct: 5 RLQKLIAISGFCSRRQAEKLLIQGQVRVNGLLAHLGDRAISHVDTIEIDGKPI--RLPDN 62 Query: 67 LVLIALNKPVGIVSTTEDGE-RDNIVDFVNHS----KRVFPIGRLDKDSQGLIFLTNHGD 121 V + +NKP G++S+ +D + R I+D + S +++ PIGRLD +S+G + LT G Sbjct: 63 HVTLLINKPTGVISSCQDPQGRPTILDLIPQSILQNRKLHPIGRLDSNSRGALILTTDGS 122 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKV----KKEAPFVF 177 L + H+K Y V V+ + I+ G+ + +T + ++ K+ + Sbjct: 123 LTMNLSHPRYSHDKAYKVWVEGRPSSSVIKIWQQGIFLDKKMTSRVELKILCKRVTSTLL 182 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELID 231 I + +G RQIRR G+ V L+R I ++ L +P G WR L EL Sbjct: 183 EIVMKEGRKRQIRRTATFLGHPVIDLQRIGIASIRLGSLPEGRWRKLNSYELSA 236 >UniRef50_C0BLA3 Pseudouridine synthase n=1 Tax=Flavobacteria bacterium MS024-3C RepID=C0BLA3_9BACT Length = 334 Score = 225 bits (575), Expect = 1e-57, Method: Composition-based stats. Identities = 77/237 (32%), Positives = 128/237 (54%), Gaps = 10/237 (4%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGK-RATIGDQVKPGDVVKVNGQLIEPR 62 D+S+RLN+YIS SG+CSRREAD +I G++ +NGK +G +V DVV +G ++ P Sbjct: 98 DNSIRLNRYISNSGVCSRREADIFIAAGSIKVNGKAVVEMGYKVALSDVVSFDGVVLNP- 156 Query: 63 EAEDLVLIALNKPVGIVSTTEDGERD-NIVDFVNHS--KRVFPIGRLDKDSQGLIFLTNH 119 E I LNKP S+ D + + + V ++ ++ P+GRLDK + GL+ TN Sbjct: 157 --EKRAYILLNKPKDFDSSATDASQPKSALGLVANATKSKIKPVGRLDKSASGLLLFTND 214 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTK---KCKVKKEAPFV 176 G+L K+ + N K Y T+ K + + + + G+ + + ++ Sbjct: 215 GELQTKLTKPKNGFRKIYHATLSKSLKADDLEKVRKGIVLEDGPVRVHEISNIEGSPATE 274 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF 233 I ++ N I+R+ +H GYE+ KL+R ++ +P G+WR LT+ E+I+L Sbjct: 275 VGIEILSAKNNIIKRLFDHLGYELIKLDRVVYAGLTKKDLPRGQWRTLTEQEIINLK 331 >UniRef50_B0MSS4 Pseudouridine synthase n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MSS4_9BACT Length = 451 Score = 225 bits (574), Expect = 1e-57, Method: Composition-based stats. Identities = 87/237 (36%), Positives = 135/237 (56%), Gaps = 9/237 (3%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATI-GDQVKPGDVVKVNGQLIEP 61 P +RLN++I++SGICSRREAD +I+ G V +NG T G +V+P D VK N + Sbjct: 213 PTGEIRLNRFIAQSGICSRREADDFIQAGLVTVNGVVVTTLGTKVQPTDEVKFNDSRV-- 270 Query: 62 REAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHS--KRVFPIGRLDKDSQGLIFLTN 118 E E V + LNKP G V++ +D +++ V + +R++P+GRLDK+S GL+ TN Sbjct: 271 -EGEKKVYLVLNKPKGYVTSLDDPHADKTVMELVKDACTERIYPVGRLDKNSVGLLLFTN 329 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK--KEAPFV 176 GDL ++ +K Y V++DKP+T+ + ++ G+ + ++ KE Sbjct: 330 DGDLTRQLTHPSFQKKKIYQVSLDKPLTKADMEQIAQGITLEDGEIYADEIAYVKEDKTE 389 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF 233 I + G NR +RR+ EH GY VKKL+R +S + G+WR LT +E+ L Sbjct: 390 VGIEIHSGRNRIVRRIFEHLGYAVKKLDRVYYAGLSKKNLKRGQWRFLTREEVQRLK 446 >UniRef50_Q4A5Z2 Pseudouridine synthase n=2 Tax=Mycoplasma synoviae 53 RepID=Q4A5Z2_MYCS5 Length = 234 Score = 225 bits (574), Expect = 1e-57, Method: Composition-based stats. Identities = 69/235 (29%), Positives = 117/235 (49%), Gaps = 8/235 (3%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPG-DVVKVNGQLIEPREA 64 +R+ K+I++S + +R E + I +G V +N + P D + + G L+E R Sbjct: 2 KIRIEKFIADSTLYTRNEIKKLISKGLVKVNDLIIKKSQSIDPKLDKIYLEGILLEAR-- 59 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNHS----KRVFPIGRLDKDSQGLIFLTNHG 120 E+ I +NKP G + D + + + + K F IGRLD D++GL+ +TN G Sbjct: 60 EEFSYIMMNKPAGYICANFDWNKQVVFELLLDLEMNLKDFFTIGRLDIDTEGLLIITNDG 119 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRIT 180 L + +L K Y V +DKP+ + + + I KK + + + IT Sbjct: 120 KLSHNLLSPKKHIPKTYYVELDKPLEKNIKELLEKELLIDEIKYKKSILNNISNNKWEIT 179 Query: 181 LVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDLFK 234 + +G QI+ + HFGY+V L+R ++ N+SL + GE++ LT +EL L Sbjct: 180 IFEGKFHQIKIIFAHFGYKVTYLKRIKMNNLSLDENLKPGEYKFLTKEELDLLKN 234 >UniRef50_C1DA59 Pseudouridine synthase n=6 Tax=Betaproteobacteria RepID=C1DA59_LARHH Length = 703 Score = 225 bits (574), Expect = 1e-57, Method: Composition-based stats. Identities = 73/241 (30%), Positives = 129/241 (53%), Gaps = 11/241 (4%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREA 64 + +RL K ++ +G+ SRR+ D + G V +NG A +G +V+PGD V+V+ + + R Sbjct: 451 NEMRLQKALALAGLGSRRDMDELVAAGRVSINGAVAELGARVRPGDKVRVDSKPVLIRWP 510 Query: 65 EDL-VLIALNKPVGIVSTTEDGE-RDNIVDFVNHSK--RVFPIGRLDKDSQGLIFLTNHG 120 + L +I +K G + T +D E R + D + ++ + IGRLD ++ GL+ T G Sbjct: 511 DRLPRVIVYHKQEGEIVTRDDPEGRTTVFDRLPQTRSSKWVAIGRLDVNTSGLLIFTTSG 570 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA------P 174 DL N++ + E+EY V V +T E ++ +AGV + ++++ Sbjct: 571 DLANRMTHPSFEVEREYAVRVLGKLTPEQMKETTAGVQLDDGPASFQFIREDDDKEDSVN 630 Query: 175 FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSG-IPLGEWRDLTDDELIDLF 233 +R+ + +G NR++RRM EHFG V +L R R V+L + G++ +L + E+ L Sbjct: 631 HWYRVGIREGRNREVRRMFEHFGLTVSRLMRVRFGIVTLPSRLKRGQFYELNELEVSKLM 690 Query: 234 K 234 Sbjct: 691 H 691 >UniRef50_A0M7H0 Ribosomal large subunit pseudouridine synthase F n=4 Tax=Flavobacteriales RepID=A0M7H0_GRAFK Length = 295 Score = 225 bits (573), Expect = 2e-57, Method: Composition-based stats. Identities = 82/239 (34%), Positives = 131/239 (54%), Gaps = 10/239 (4%) Query: 1 MLPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLI 59 + +RLNKYI+ SG+CSRR+AD YI GNV +NGK T +G +VK D V+ +G+ + Sbjct: 57 LTNSDGIRLNKYIANSGVCSRRDADMYIAAGNVTVNGKSITEMGYRVKLEDDVRFDGRRL 116 Query: 60 EPREAEDLVLIALNKPVGI-VSTTEDGERDNIVDFVNH--SKRVFPIGRLDKDSQGLIFL 116 P + E I LNKP G V+ + +++ V S +V P+G+LD ++GL+ Sbjct: 117 NPEKPE---YILLNKPAGFFVTGNPEKGGKTVMELVARTTSAKVSPVGKLDNQAKGLLLF 173 Query: 117 TNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGT---VTKKCKVKKEA 173 TN G L K+ + N + Y VT++K +T+E + G+ GV I G+ +T ++ + Sbjct: 174 TNDGTLAKKLAKPKNGIRQIYQVTLNKNLTKEDLEGIEKGVYIEGSKVLITSISFIEDKP 233 Query: 174 PFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDL 232 I L + R+ + GYEV+ L+R ++ +P G R+LT E+I+L Sbjct: 234 HNEVGIELYSIKEHIVTRIFKSLGYEVESLDRVVFGGLTKKDLPRGRHRNLTKQEVINL 292 >UniRef50_A8U4V7 Pseudouridine synthase n=10 Tax=Lactobacillales RepID=A8U4V7_9LACT Length = 239 Score = 224 bits (572), Expect = 2e-57, Method: Composition-based stats. Identities = 70/238 (29%), Positives = 121/238 (50%), Gaps = 14/238 (5%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGD-QVKPG-DVVKVNGQLIEPREA 64 +RL+K + E+G SRR R ++ V +NG+ + V P V V G I+ Sbjct: 1 MRLDKLLFETGFGSRRTVKRLLKSKQVQVNGQTIMVDSLNVDPQLQEVTVAGVPIDY--- 57 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKR---VFPIGRLDKDSQGLIFLTNHGD 121 + V L+KP G+VS D ++D + S+R +FP+GRLDKD++GL+ LTN+G Sbjct: 58 QPHVYYMLHKPAGVVSAVSDAVNQTVIDLIEPSQRVPGLFPVGRLDKDTEGLLLLTNNGQ 117 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVT-KKCKV----KKEAPFV 176 L ++L + K Y V V++ +T++ +AG+ G V K ++ + + Sbjct: 118 LGYQLLIPKKEVTKCYEVVVNERVTDDDQLAFTAGIVFDGGVICKPAQLTILSQSDTESR 177 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSG-IPLGEWRDLTDDELIDLF 233 + + +G Q+++M G +V L+R + + L + LG +R L +EL+ L Sbjct: 178 VLLEISEGKFHQVKKMFLSVGKKVIYLKRLSMGPLQLDKTLSLGSYRPLHAEELVALK 235 >UniRef50_B4RA72 Pseudouridine synthase n=4 Tax=Caulobacteraceae RepID=B4RA72_PHEZH Length = 521 Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats. Identities = 72/294 (24%), Positives = 136/294 (46%), Gaps = 19/294 (6%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKR-ATIGDQVKPGDVVKVNGQLIEPRE 63 R+ K ++ SG+ SRR+ +R I +G V +NG+ T +V+PGD++ V+G ++ E Sbjct: 149 GGERIAKLLARSGVGSRRDVERLIAEGRVAINGQVLTTPAVKVEPGDILTVDGAVVG--E 206 Query: 64 AEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHS-KRVFPIGRLDKDSQGLIFLTNHGD 121 E + + +KPVG+V+T +D + R + + + R+ +GRLD +S+GL+ LTN G Sbjct: 207 PEPVRVFRYHKPVGLVTTHKDPQGRPTVFEALPEGLPRLISVGRLDLNSEGLLLLTNDGG 266 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK--------KEA 173 L + + Y IT+E + + G+ + G + + + A Sbjct: 267 LARALELPATGVVRRYRARAHGRITQERLDTLKDGITVEGVRYGAIEARLDKAKEGHQGA 326 Query: 174 PFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF 233 +TL +G NR++RR+ E G +V +L R +L + +GE ++ + + Sbjct: 327 NLWLTVTLQEGKNREVRRVLEALGLKVNRLIRLSYGPFALGTLDVGEIEEVGPRVIREQL 386 Query: 234 KLIENSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKK 287 + + P+ K + P K + + + R +P +K Sbjct: 387 E------GHIPPENMPKGDRPQYRSPARKSRRAQAESRQAELVPPRPEAPAKKA 434 >UniRef50_B6BUN1 Pseudouridine synthase n=1 Tax=beta proteobacterium KB13 RepID=B6BUN1_9PROT Length = 257 Score = 224 bits (571), Expect = 3e-57, Method: Composition-based stats. Identities = 69/243 (28%), Positives = 121/243 (49%), Gaps = 10/243 (4%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPRE 63 + R+ K+++ G+ SRR + I+Q + +N K +G V +++ +NG+ I + Sbjct: 12 NKKERIQKFLANMGMGSRRSIEELIKQKKITVNQKPIDLGHMVYGNEIIHINGRRIYFKN 71 Query: 64 AEDL--VLIALNKPVGIVSTTEDGER-DNIVDFVNHSK--RVFPIGRLDKDSQGLIFLTN 118 AE LI +KP G + + D + + + K + IGRLD ++ GL+ +TN Sbjct: 72 AEKRESRLIIYHKPEGEIVSHSDPKHQKTVFQKLPKVKNGKWISIGRLDINTSGLLLITN 131 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK----KEAP 174 G L N ++ ++EY V + +TEE I + GV + V + + A Sbjct: 132 DGKLANHMMHPSQQIDREYSVRILGEVTEEIINNIRKGVKLDDGVAHVDTFEHTGGEGAN 191 Query: 175 FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSG-IPLGEWRDLTDDELIDLF 233 FRI L +G NR+IRR+ E +V +L RTR ++L + G++ +L L +F Sbjct: 192 QWFRIILKEGRNREIRRLVESQNLKVSRLIRTRYGPLNLPSHLKRGQFMELEKKNLEKIF 251 Query: 234 KLI 236 K++ Sbjct: 252 KML 254 >UniRef50_B2TQQ1 Pseudouridine synthase n=8 Tax=Clostridium RepID=B2TQQ1_CLOBB Length = 264 Score = 223 bits (570), Expect = 4e-57, Method: Composition-based stats. Identities = 65/256 (25%), Positives = 116/256 (45%), Gaps = 28/256 (10%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAED 66 +RL+K+++ES + R+ YI+ G V +NG+ T + + + L + Sbjct: 1 MRLDKFLAESAVGRRKIVRTYIKDGMVKVNGEIITEPS-IDINEKLDDVEYLEKKVVHTG 59 Query: 67 LVLIALNKPVGIVSTTEDGERDNIVDFVNHSKR-VFPIGRLDKDSQGLIFLTNHGDLVNK 125 V NKP G ++ T+D + D+ + VF +GRLDKD++GL+ LTN G+ +K Sbjct: 60 KVYYMFNKPSGCITATKDNIHRTVFDYFDEDMNGVFHVGRLDKDTEGLLLLTNDGEFEHK 119 Query: 126 ILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI--LGTVTKKCKVKKEAPFVF------ 177 ++ EK Y + +E + + GV I +TK K+ + Sbjct: 120 VMHPEKHVEKTYFFWALGSLDDEDKKQLQEGVFIGSNEALTKPAKIDIHKSGSYIEFKEE 179 Query: 178 -----------------RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSG-IPLG 219 +T+ +G Q++RM + G V L+R I + L + +G Sbjct: 180 IPINSLKNKDHQPVVSGYLTISEGQKHQVKRMLKAVGCYVIYLKRISIGGLKLDESLKMG 239 Query: 220 EWRDLTDDELIDLFKL 235 ++RDLT E+ +F++ Sbjct: 240 DYRDLTKKEIKRIFEI 255 >UniRef50_C6HYA4 Pseudouridine synthase n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HYA4_9BACT Length = 638 Score = 223 bits (570), Expect = 4e-57, Method: Composition-based stats. Identities = 85/295 (28%), Positives = 141/295 (47%), Gaps = 10/295 (3%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPR 62 D +RL+K ++ G+ SRR++++ I G+V ++G+ T G +V P V + PR Sbjct: 23 DGRLRLHKILAHRGVASRRKSEQLIAAGSVTVDGEVVTEPGTRVDPKHQVILVDGRPLPR 82 Query: 63 EAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGD 121 E E L KP G+VST D E R + D+ + IGRLD ++G + LTN+GD Sbjct: 83 EPETF-LFLFYKPKGVVSTLFDPEGRPTLRDYFPGIDPLLHIGRLDFQTEGALLLTNNGD 141 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAG-VPILGTVTKKCKVKKE----APFV 176 L +IL + + YLV + ++ + M+ G + + G ++ E Sbjct: 142 LSQRILHPRFEIPRTYLVKIQGGMSPAHLERMARGEIRLDGRPVVPLELVPERQTSTNAW 201 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFK-- 234 +RITL +G NR++RR+ E Y V KL RT ++L+G+ GE+R +T E L Sbjct: 202 YRITLTEGRNREVRRLFETLNYFVLKLVRTAFGPLTLAGLEPGEYRTVTPHETELLLAGT 261 Query: 235 LIENSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKG 289 ++ + + + G R + EK G+ + +R T +G Sbjct: 262 RPQSLPKNLDSRFSRRDDDGGAPRSEGRRSGREEKVGQGSREPRRTTGKSAAPRG 316 >UniRef50_Q2K4S3 Pseudouridine synthase n=10 Tax=Rhizobiaceae RepID=Q2K4S3_RHIEC Length = 312 Score = 223 bits (570), Expect = 4e-57, Method: Composition-based stats. Identities = 74/237 (31%), Positives = 119/237 (50%), Gaps = 12/237 (5%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGD-QVK-PGDVVKVNGQLIEPREA 64 V L + +S+ G CSR +A+R I + V ++G+ + V + V+G +I A Sbjct: 70 VTLPRALSKLGYCSRTQAERLIAESRVAVDGRTVSDASAWVDLSTARISVDGLVIA---A 126 Query: 65 EDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHS--KRVFPIGRLDKDSQGLIFLTNHGD 121 E + + LNKP G+V+T +D E R + D + + + P+GRLDK S+GL+ TN + Sbjct: 127 EAKIYLMLNKPRGLVTTRQDPEGRPTVYDCLKNFDIPHLSPVGRLDKASEGLLLFTNDTE 186 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKK----EAPFVF 177 +L K Y V +D+ + +E I M++G+ G + ++ + Sbjct: 187 FAQTLLDPLTHVTKTYHVQIDRLMDDEEIAAMTSGIRHDGELLTAAATRRLRQGDRNSWI 246 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFK 234 + L +G NRQIRRM E G E +L R I + L +P G R LT+ EL L + Sbjct: 247 EVELDEGRNRQIRRMLEALGAECLRLVRVAIGGLELGELPKGAVRALTEGELQGLRR 303 >UniRef50_A1K3P0 Pseudouridylate synthase n=3 Tax=Betaproteobacteria RepID=A1K3P0_AZOSB Length = 500 Score = 223 bits (570), Expect = 4e-57, Method: Composition-based stats. Identities = 86/242 (35%), Positives = 126/242 (52%), Gaps = 19/242 (7%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEPRE 63 S VRL+K +++ GICSRREAD IE+G VF++G+R +G ++ P V + + + Sbjct: 260 SGVRLSKVMADRGICSRREADELIERGWVFVDGRRVSELGTRIDPDARVVLAPE--AKKA 317 Query: 64 AEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHS----------------KRVFPIGRLD 107 V I L+KPVG VS + + V + K + P GRLD Sbjct: 318 QAQRVTILLHKPVGYVSGQPEPGYEPAVTLIGGDNQFDRDVAQRFHPSQLKGLAPAGRLD 377 Query: 108 KDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKC 167 DS GL+ LT G + +++ + EKEYLV V+ + ++ + ++ G+ + + Sbjct: 378 IDSTGLLVLTQDGRIARQLIGDDSKVEKEYLVRVEGELVDDGLALLNHGLSLDDKPLRPA 437 Query: 168 KVKKEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDD 227 KV+ R L +G RQIRRMCE G V L+R RI V L +PLGEWR L DD Sbjct: 438 KVEWINEDQLRFVLKEGRKRQIRRMCELVGLRVVGLKRVRIGRVKLGDLPLGEWRYLRDD 497 Query: 228 EL 229 E+ Sbjct: 498 EV 499 >UniRef50_A6WK95 Pseudouridine synthase n=12 Tax=Gammaproteobacteria RepID=A6WK95_SHEB8 Length = 256 Score = 223 bits (569), Expect = 5e-57, Method: Composition-based stats. Identities = 66/232 (28%), Positives = 112/232 (48%), Gaps = 9/232 (3%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRATIGD-QVKPGDVVKVNGQLIEPREAED 66 RL++Y+ R+ + G V ++G D QV ++++ +++ A Sbjct: 28 RLDRYLCTQLHTHRKAVRELLLSGRVRVDGLIVKDMDRQVDEFSHIQLDEHILQ---ANA 84 Query: 67 LVLIALNKPVGIVSTTEDGERDNIVDFVNHSKR--VFPIGRLDKDSQGLIFLTNHGDLVN 124 V + L+KP+G+VS T+D + ++D ++ R + GRLD +S GL+ LTN + Sbjct: 85 PVYVMLHKPIGVVSATKDIQHKTVIDLLDCEARDELHIAGRLDLNSSGLLLLTNDSRWSD 144 Query: 125 KILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVP--ILGTVTKKCKVKKEAPFVFRITLV 182 ++ + +K Y VT+ PITEE+I + G+ T+ K+ A V +TL Sbjct: 145 ALMSPTHKVDKVYRVTLANPITEEYIAAFAEGMYFGFEDITTQPAKLVILADNVAEVTLH 204 Query: 183 QGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDLF 233 +G QI+RM F V L R I ++ L + GE R LT E+ + Sbjct: 205 EGKYHQIKRMFGRFRNPVVGLHRLSIGDIVLDEKLAPGESRALTAAEVASIR 256 >UniRef50_B1KQS3 Pseudouridine synthase n=20 Tax=Gammaproteobacteria RepID=B1KQS3_SHEWM Length = 239 Score = 223 bits (569), Expect = 6e-57, Method: Composition-based stats. Identities = 63/239 (26%), Positives = 113/239 (47%), Gaps = 16/239 (6%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGK-RATIGDQVKPGDVVKVNGQLIEPREAE 65 +RL+K++ +S +R EA I G V +NG+ + QV + +++ G + A Sbjct: 1 MRLDKFLCKSTQLTRHEACELILAGKVLVNGESVVSPSAQVHENNHIRLEGG--QRLTAR 58 Query: 66 DLVLIALNKPVGIVSTTEDGERDNIVDFVN--HSKRVFPIGRLDKDSQGLIFLTNHGDLV 123 I L+KP +S+ DG+ ++ +F+N H+ + GRLD D+ GL+ +T+ G Sbjct: 59 ASRYIMLHKPADTLSSNVDGDHPSVFNFINLEHTSELHIAGRLDADTTGLLLITDDGRWS 118 Query: 124 NKILRAGNDHEKEYLV--------TVDKPITEEFIRGMSAGVPILGT--VTKKCKVKKEA 173 + EK Y V + I E G+ + G +T K++ + Sbjct: 119 FNVFNPKYHCEKVYRVYLRDSIEGEIAGEIDAELKARFKQGLDLQGEQALTLPAKLEFVS 178 Query: 174 PFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDL 232 P +T+ +G Q++RM G V L R ++ + L +P+G+WR LT +E+ + Sbjct: 179 PKEVLLTITEGRYHQMKRMFARVGNRVNALHREQVGKIKL-DMPVGQWRYLTREEIDSI 236 >UniRef50_A3JEU2 Pseudouridine synthase n=2 Tax=Marinobacter RepID=A3JEU2_9ALTE Length = 250 Score = 223 bits (569), Expect = 6e-57, Method: Composition-based stats. Identities = 65/236 (27%), Positives = 110/236 (46%), Gaps = 8/236 (3%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGD-QVKPGDVVKVNGQLIEPRE 63 S+++L++ +S SR++A+ I G V++N D V V VNG+ ++ Sbjct: 14 SAMKLSRIVSNQPDISRKQANWLIATGQVYVNDLSCRTADADVDEFAAVSVNGKTLQQGH 73 Query: 64 AEDLVLIALNKPVGIVSTTEDGERDNIVDFVNH--SKRVFPIGRLDKDSQGLIFLTNHGD 121 I L+KP G +S TED ++ + S+ + GRLD+ + GL+ LTN+G Sbjct: 74 CAH--YIMLHKPAGYLSATEDDTHPTVLQLLPPGLSQCLHIAGRLDRATTGLMILTNNGT 131 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGT--VTKKCKVKKEAPFVFRI 179 ++ G K Y VT PI + + + G+ T ++ P + R+ Sbjct: 132 WSRQLTLPGMGIAKVYRVTTAYPIGPDTPQRFAEGIWFEYEQLTTAPATLELLEPTLARL 191 Query: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDELIDLFK 234 T+ +G Q++RM G V L R +I ++ L S + G +R LT E L + Sbjct: 192 TIYEGRYHQVKRMFHAVGNRVIALHREQIGHLQLNSDLAEGNFRMLTGSETEGLNR 247 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q83IR6 Ribosomal large subunit pseudouridine synthase F... 359 9e-98 UniRef50_Q8Z1V3 Ribosomal large subunit pseudouridine synthase F... 317 3e-85 UniRef50_Q7MMX9 Pseudouridine synthase n=43 Tax=Vibrionaceae Rep... 298 1e-79 UniRef50_C7ICF2 Pseudouridine synthase n=1 Tax=Clostridium papyr... 295 1e-78 UniRef50_C7PFL3 Pseudouridine synthase n=3 Tax=Bacteria RepID=C7... 289 9e-77 UniRef50_C6J9Y4 Pseudouridine synthase n=2 Tax=Clostridiales Rep... 285 2e-75 UniRef50_B3E7C4 Pseudouridine synthase n=6 Tax=Desulfuromonadale... 284 2e-75 UniRef50_C9L6I1 Pseudouridine synthase n=1 Tax=Blautia hansenii ... 284 3e-75 UniRef50_A4J3M3 Pseudouridine synthase n=167 Tax=Bacteria RepID=... 281 2e-74 UniRef50_Q21MN5 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q2... 281 2e-74 UniRef50_A9KPL1 Pseudouridine synthase n=63 Tax=Bacteria RepID=A... 280 3e-74 UniRef50_B0TFD8 Pseudouridine synthase n=18 Tax=Bacteria RepID=B... 280 5e-74 UniRef50_A6EPE0 Pseudouridine synthase n=1 Tax=unidentified euba... 279 1e-73 UniRef50_C7MNA2 Pseudouridine synthase n=1 Tax=Cryptobacterium c... 277 2e-73 UniRef50_Q3IC94 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q3... 275 2e-72 UniRef50_UPI000196BAD7 hypothetical protein CATMIT_00510 n=1 Tax... 275 2e-72 UniRef50_B2A4P2 Pseudouridine synthase n=2 Tax=Clostridia RepID=... 274 3e-72 UniRef50_UPI0001693918 pseudouridylate synthase n=1 Tax=Paenibac... 273 5e-72 UniRef50_D1CFA0 Pseudouridine synthase n=1 Tax=Thermobaculum ter... 273 5e-72 UniRef50_C7M7R0 Pseudouridine synthase n=4 Tax=Bacteroidetes Rep... 272 1e-71 UniRef50_A5IKF7 Pseudouridine synthase n=5 Tax=Thermotogaceae Re... 271 1e-71 UniRef50_Q24V73 Pseudouridine synthase n=3 Tax=Bacteria RepID=Q2... 271 1e-71 UniRef50_A8SLU4 Pseudouridine synthase n=1 Tax=Parvimonas micra ... 271 2e-71 UniRef50_C6JI84 Pseudouridine synthase n=2 Tax=Fusobacterium Rep... 271 2e-71 UniRef50_C8WXC0 Pseudouridine synthase n=3 Tax=Firmicutes RepID=... 271 2e-71 UniRef50_B3U4L2 Pseudouridine synthase n=3 Tax=Bacteria RepID=B3... 271 2e-71 UniRef50_B8G2X0 Pseudouridine synthase n=3 Tax=Bacteria RepID=B8... 271 3e-71 UniRef50_B2V6W2 Pseudouridine synthase n=5 Tax=Bacteria RepID=B2... 271 3e-71 UniRef50_A5TWE7 Pseudouridine synthase n=10 Tax=Fusobacterium Re... 270 4e-71 UniRef50_Q0AX41 Pseudouridine synthase n=1 Tax=Syntrophomonas wo... 270 5e-71 UniRef50_B0N6F1 Pseudouridine synthase n=3 Tax=Bacteria RepID=B0... 270 6e-71 UniRef50_C5EVC9 Pseudouridine synthase n=6 Tax=Clostridiales Rep... 269 8e-71 UniRef50_C0FY58 Pseudouridine synthase n=3 Tax=Clostridiales Rep... 268 1e-70 UniRef50_D1Y0J0 Pseudouridine synthase n=1 Tax=Prevotella bivia ... 268 1e-70 UniRef50_B9KC52 Pseudouridine synthase n=1 Tax=Thermotoga neapol... 268 2e-70 UniRef50_A6LIA0 Pseudouridine synthase n=23 Tax=Bacteroidales Re... 268 2e-70 UniRef50_A8ZRV1 Pseudouridine synthase n=3 Tax=Desulfobacteracea... 268 2e-70 UniRef50_O67444 Uncharacterized RNA pseudouridine synthase aq_14... 267 2e-70 UniRef50_Q65HX7 Pseudouridine synthase n=5 Tax=Firmicutes RepID=... 267 3e-70 UniRef50_C3JBA6 Pseudouridine synthase n=2 Tax=Bacteria RepID=C3... 267 3e-70 UniRef50_B2RK43 Pseudouridine synthase n=1 Tax=Porphyromonas gin... 267 4e-70 UniRef50_B5YJH7 Pseudouridine synthase n=1 Tax=Thermodesulfovibr... 266 4e-70 UniRef50_C2D7I2 Pseudouridine synthase n=1 Tax=Atopobium vaginae... 266 6e-70 UniRef50_C9KIR7 Pseudouridine synthase n=1 Tax=Mitsuokella multa... 266 7e-70 UniRef50_C7H5G4 Pseudouridine synthase n=8 Tax=Clostridiales Rep... 266 8e-70 UniRef50_C1XV14 Pseudouridine synthase n=2 Tax=Meiothermus RepID... 265 9e-70 UniRef50_B1XJP9 Pseudouridine synthase n=3 Tax=Chroococcales Rep... 265 1e-69 UniRef50_A3ESK0 Pseudouridine synthase n=4 Tax=Bacteria RepID=A3... 265 2e-69 UniRef50_D1C7P2 Pseudouridine synthase n=1 Tax=Sphaerobacter the... 265 2e-69 UniRef50_A8SYF2 Pseudouridine synthase n=1 Tax=Coprococcus eutac... 265 2e-69 UniRef50_P35159 Ribosomal large subunit pseudouridine synthase B... 264 2e-69 UniRef50_A5ZYR1 Pseudouridine synthase n=2 Tax=Clostridiales Rep... 264 2e-69 UniRef50_A2RP35 Pseudouridine synthase n=172 Tax=Firmicutes RepI... 264 2e-69 UniRef50_C8NZC3 Pseudouridine synthase n=1 Tax=Erysipelothrix rh... 264 3e-69 UniRef50_UPI0001BCEF2E pseudouridine synthase n=1 Tax=Selenomona... 264 3e-69 UniRef50_Q12AB3 Pseudouridine synthase n=8 Tax=Proteobacteria Re... 264 3e-69 UniRef50_B4U4Q4 Pseudouridine synthase n=15 Tax=Lactobacillales ... 263 4e-69 UniRef50_C8P160 Pseudouridine synthase n=1 Tax=Erysipelothrix rh... 263 6e-69 UniRef50_B4D966 Pseudouridine synthase n=1 Tax=Chthoniobacter fl... 263 7e-69 UniRef50_P0AA45 Ribosomal small subunit pseudouridine synthase A... 263 7e-69 UniRef50_Q6G8H4 Pseudouridine synthase n=61 Tax=Firmicutes RepID... 263 7e-69 UniRef50_B9KY92 Pseudouridine synthase n=1 Tax=Thermomicrobium r... 263 7e-69 UniRef50_A0PYR9 Pseudouridine synthase n=9 Tax=Clostridium RepID... 262 1e-68 UniRef50_A3CPQ5 Pseudouridine synthase n=3 Tax=Firmicutes RepID=... 262 1e-68 UniRef50_C6VXU0 Pseudouridine synthase n=1 Tax=Dyadobacter ferme... 261 1e-68 UniRef50_C2MA52 Pseudouridine synthase n=1 Tax=Porphyromonas uen... 261 2e-68 UniRef50_A5V220 Pseudouridine synthase n=5 Tax=Bacteria RepID=A5... 261 2e-68 UniRef50_UPI00016C3D27 ribosomal large subunit pseudouridine syn... 261 2e-68 UniRef50_A1WE21 Pseudouridine synthase n=1 Tax=Verminephrobacter... 260 3e-68 UniRef50_Q8ZGM2 Ribosomal small subunit pseudouridine synthase A... 260 3e-68 UniRef50_C4Z9Y4 Pseudouridine synthase n=16 Tax=Bacteria RepID=C... 260 3e-68 UniRef50_Q3MC44 Pseudouridine synthase n=21 Tax=Cyanobacteria Re... 260 4e-68 UniRef50_C4V2S0 Pseudouridine synthase n=1 Tax=Selenomonas flueg... 260 4e-68 UniRef50_A4BW35 Pseudouridine synthase n=3 Tax=Flavobacteriaceae... 260 6e-68 UniRef50_A4J9G8 Pseudouridine synthase n=47 Tax=Bacteria RepID=A... 259 7e-68 UniRef50_Q1J0B9 Pseudouridine synthase n=5 Tax=Deinococci RepID=... 259 7e-68 UniRef50_C6Y027 Pseudouridine synthase n=1 Tax=Pedobacter hepari... 259 8e-68 UniRef50_B3QY10 Pseudouridine synthase n=10 Tax=Chlorobiaceae Re... 259 1e-67 UniRef50_A3ZQL4 Pseudouridine synthase n=1 Tax=Blastopirellula m... 258 1e-67 UniRef50_A4SY81 Pseudouridine synthase n=5 Tax=Proteobacteria Re... 258 1e-67 UniRef50_C4XSY8 Pseudouridine synthase n=11 Tax=Desulfovibrional... 258 2e-67 UniRef50_A3HY40 Pseudouridine synthase n=1 Tax=Algoriphagus sp. ... 258 2e-67 UniRef50_Q2S2G3 Pseudouridine synthase n=1 Tax=Salinibacter rube... 257 3e-67 UniRef50_D0U645 Pseudouridine synthase n=1 Tax=uncultured actino... 257 3e-67 UniRef50_Q2NIZ3 Pseudouridine synthase n=5 Tax=Candidatus Phytop... 257 3e-67 UniRef50_D0MIA1 Pseudouridine synthase n=1 Tax=Rhodothermus mari... 257 3e-67 UniRef50_C4XEA6 Pseudouridine synthase n=1 Tax=Mycoplasma fermen... 257 4e-67 UniRef50_Q9HZ55 Ribosomal large subunit pseudouridine synthase B... 257 4e-67 UniRef50_C8QZD4 Pseudouridine synthase n=1 Tax=Desulfurivibrio a... 256 4e-67 UniRef50_D2QMI8 RNA-binding S4 domain protein n=16 Tax=Bacteroid... 256 7e-67 UniRef50_Q55578 Uncharacterized RNA pseudouridine synthase slr03... 256 7e-67 UniRef50_C7NDY8 Pseudouridine synthase n=5 Tax=Fusobacteriaceae ... 256 7e-67 UniRef50_C7GZ55 Pseudouridine synthase n=1 Tax=Eubacterium saphe... 256 7e-67 UniRef50_C4FUC8 Pseudouridine synthase n=1 Tax=Catonella morbi A... 256 8e-67 UniRef50_C6X4T2 Pseudouridine synthase n=2 Tax=Flavobacteriaceae... 256 8e-67 UniRef50_Q01SF5 Pseudouridine synthase n=3 Tax=Bacteria RepID=Q0... 256 8e-67 UniRef50_B1C6T1 Pseudouridine synthase n=2 Tax=Clostridiales Rep... 256 9e-67 UniRef50_C0QWY7 Pseudouridine synthase n=2 Tax=Brachyspira RepID... 255 1e-66 UniRef50_C8NNL7 Pseudouridine synthase n=8 Tax=Corynebacterium R... 255 1e-66 UniRef50_C4ZJR2 Pseudouridine synthase n=2 Tax=Betaproteobacteri... 255 1e-66 UniRef50_A9NFY3 Pseudouridine synthase n=1 Tax=Acholeplasma laid... 255 1e-66 UniRef50_C8WAL4 Pseudouridine synthase n=7 Tax=Coriobacteriaceae... 254 2e-66 UniRef50_Q1D5Q2 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q1... 254 2e-66 UniRef50_A9KNY1 Pseudouridine synthase n=3 Tax=Firmicutes RepID=... 254 2e-66 UniRef50_A1ZI67 Pseudouridine synthase n=1 Tax=Microscilla marin... 254 3e-66 UniRef50_A4CJ52 Pseudouridine synthase n=5 Tax=cellular organism... 254 3e-66 UniRef50_Q31GA0 Pseudouridine synthase n=2 Tax=Gammaproteobacter... 254 3e-66 UniRef50_Q31H34 Pseudouridine synthase n=1 Tax=Thiomicrospira cr... 254 3e-66 UniRef50_C8PSZ6 Ribosomal large subunit pseudouridine synthase B... 253 4e-66 UniRef50_C1ZE67 Pseudouridine synthase n=1 Tax=Planctomyces limn... 253 4e-66 UniRef50_Q7UUP0 Pseudouridine synthase n=1 Tax=Rhodopirellula ba... 253 4e-66 UniRef50_A4QE19 Pseudouridine synthase n=13 Tax=Corynebacterinea... 253 5e-66 UniRef50_A0JV58 Pseudouridine synthase n=37 Tax=Actinobacteridae... 253 5e-66 UniRef50_Q11YT0 Pseudouridine synthase n=9 Tax=Bacteroidetes Rep... 253 6e-66 UniRef50_B0S1L0 Pseudouridine synthase n=2 Tax=Finegoldia magna ... 253 6e-66 UniRef50_C8WGQ8 Pseudouridine synthase n=1 Tax=Eggerthella lenta... 253 6e-66 UniRef50_B9MRL6 Pseudouridine synthase n=2 Tax=Clostridia RepID=... 253 6e-66 UniRef50_C1F236 Pseudouridine synthase n=8 Tax=Bacteria RepID=C1... 253 7e-66 UniRef50_Q3B289 Pseudouridine synthase n=2 Tax=Chlorobium/Pelodi... 252 8e-66 UniRef50_Q1GFA6 Pseudouridine synthase n=3 Tax=Rhodobacteraceae ... 252 8e-66 UniRef50_A6C4P7 Pseudouridine synthase n=1 Tax=Planctomyces mari... 252 9e-66 UniRef50_A3JIZ1 Pseudouridine synthase n=1 Tax=Marinobacter sp. ... 252 9e-66 UniRef50_Q1LLR3 Pseudouridine synthase n=15 Tax=Proteobacteria R... 252 1e-65 UniRef50_A0L6G3 Pseudouridine synthase n=1 Tax=Magnetococcus sp.... 252 1e-65 UniRef50_C1DTU8 Pseudouridine synthase n=5 Tax=Bacteria RepID=C1... 251 1e-65 UniRef50_C6BUF1 RNA-binding S4 domain protein n=1 Tax=Desulfovib... 251 2e-65 UniRef50_P45104 Ribosomal large subunit pseudouridine synthase B... 251 2e-65 UniRef50_A5IXL5 Pseudouridine synthase n=3 Tax=Mycoplasma RepID=... 251 2e-65 UniRef50_C0W3E8 Pseudouridine synthase n=1 Tax=Actinomyces uroge... 251 2e-65 UniRef50_C3X1E1 Pseudouridine synthase n=2 Tax=Oxalobacter formi... 251 2e-65 UniRef50_A5EVQ2 Pseudouridine synthase n=1 Tax=Dichelobacter nod... 250 4e-65 UniRef50_C9RK28 Pseudouridine synthase n=1 Tax=Fibrobacter succi... 250 4e-65 UniRef50_Q1MQ05 Pseudouridine synthase n=1 Tax=Lawsonia intracel... 250 4e-65 UniRef50_A9GX03 Pseudouridine synthase n=2 Tax=Bacteria RepID=A9... 250 5e-65 UniRef50_Q04F57 Pseudouridine synthase n=2 Tax=Oenococcus oeni R... 250 6e-65 UniRef50_Q2LSY4 Pseudouridine synthase n=1 Tax=Syntrophus acidit... 250 7e-65 UniRef50_D0SB72 Pseudouridine synthase n=5 Tax=Acinetobacter Rep... 249 7e-65 UniRef50_Q3J464 Pseudouridine synthase n=15 Tax=Bacteria RepID=Q... 249 8e-65 UniRef50_D2R7V9 Pseudouridine synthase n=1 Tax=Pirellula staleyi... 248 1e-64 UniRef50_A6G735 Pseudouridine synthase n=2 Tax=Bacteria RepID=A6... 248 1e-64 UniRef50_D2RB61 Pseudouridylate synthase n=2 Tax=Gardnerella vag... 248 2e-64 UniRef50_Q8X4Q8 Ribosomal large subunit pseudouridine synthase B... 248 2e-64 UniRef50_D1N1S2 Pseudouridine synthase n=1 Tax=Victivallis vaden... 248 2e-64 UniRef50_Q3IDR5 Pseudouridine synthase n=3 Tax=Alteromonadales R... 248 2e-64 UniRef50_UPI0001C337CA ribosomal large subunit pseudouridine syn... 248 2e-64 UniRef50_A5WGV6 Pseudouridine synthase n=7 Tax=Moraxellaceae Rep... 247 3e-64 UniRef50_B2HUK5 Pseudouridine synthase n=9 Tax=Gammaproteobacter... 247 3e-64 UniRef50_C7I043 Pseudouridine synthase n=4 Tax=Proteobacteria Re... 247 4e-64 UniRef50_C3BQR1 Pseudouridine synthase n=3 Tax=Bacillus RepID=C3... 246 5e-64 UniRef50_B3DRY9 Pseudouridine synthase n=7 Tax=Bifidobacterium R... 246 5e-64 UniRef50_D0LG91 Pseudouridine synthase n=3 Tax=Bacteria RepID=D0... 246 5e-64 UniRef50_Q38VQ0 Pseudouridine synthase n=6 Tax=Lactobacillus Rep... 246 5e-64 UniRef50_Q042N1 Pseudouridine synthase n=3 Tax=Lactobacillus gas... 246 5e-64 UniRef50_A8S8D3 Pseudouridine synthase n=1 Tax=Faecalibacterium ... 246 9e-64 UniRef50_D1R854 Pseudouridine synthase n=4 Tax=Chlamydiales RepI... 246 1e-63 UniRef50_C5CXG1 Pseudouridine synthase n=4 Tax=Comamonadaceae Re... 245 1e-63 UniRef50_D2MQD6 Pseudouridylate synthase n=1 Tax=Bulleidia extru... 245 1e-63 UniRef50_Q1H048 Pseudouridine synthase n=4 Tax=Betaproteobacteri... 245 1e-63 UniRef50_Q1J642 Pseudouridine synthase n=51 Tax=Streptococcus Re... 245 1e-63 UniRef50_Q4AAG8 Pseudouridine synthase n=6 Tax=Mycoplasma RepID=... 245 1e-63 UniRef50_Q0AS26 Pseudouridine synthase n=1 Tax=Maricaulis maris ... 245 1e-63 UniRef50_Q47QM5 Pseudouridine synthase n=3 Tax=Actinomycetales R... 245 1e-63 UniRef50_B0B8U9 Pseudouridine synthase n=10 Tax=Chlamydiales Rep... 245 1e-63 UniRef50_C7LZX4 Pseudouridine synthase n=1 Tax=Acidimicrobium fe... 245 1e-63 UniRef50_C8P302 Pseudouridine synthase n=1 Tax=Erysipelothrix rh... 245 2e-63 UniRef50_D1AL84 Pseudouridine synthase n=1 Tax=Sebaldella termit... 245 2e-63 UniRef50_C5WHE9 Pseudouridine synthase n=3 Tax=Lactobacillales R... 245 2e-63 UniRef50_C9LMF3 Ribosomal small subunit pseudouridine synthase A... 245 2e-63 UniRef50_A7HC79 Pseudouridine synthase n=1 Tax=Anaeromyxobacter ... 244 2e-63 UniRef50_C2KPR0 Pseudouridine synthase n=3 Tax=Mobiluncus RepID=... 244 2e-63 UniRef50_A8U325 Pseudouridine synthase n=1 Tax=alpha proteobacte... 244 2e-63 UniRef50_Q140U9 Pseudouridine synthase n=80 Tax=Proteobacteria R... 244 3e-63 UniRef50_C2KV26 Pseudouridylate synthase n=1 Tax=Oribacterium si... 244 3e-63 UniRef50_B0VG32 Pseudouridine synthase n=1 Tax=Candidatus Cloaca... 244 3e-63 UniRef50_UPI0001BC345F ribosomal large subunit pseudouridine syn... 244 3e-63 UniRef50_A5TW76 Pseudouridine synthase n=11 Tax=Fusobacterium Re... 244 4e-63 UniRef50_UPI0001C37AA4 16s pseudouridylate synthase n=2 Tax=Rumi... 244 4e-63 UniRef50_A1U6Q2 Pseudouridine synthase n=4 Tax=Gammaproteobacter... 243 4e-63 UniRef50_A1K7C2 Pseudouridine synthase n=1 Tax=Azoarcus sp. BH72... 243 5e-63 UniRef50_D1PIW4 Pseudouridine synthase n=1 Tax=Subdoligranulum v... 243 5e-63 UniRef50_Q87NB7 Ribosomal large subunit pseudouridine synthase B... 243 7e-63 UniRef50_B9XS61 Pseudouridine synthase n=1 Tax=bacterium Ellin51... 242 8e-63 UniRef50_D0J9Y2 Pseudouridine synthase n=1 Tax=Blattabacterium s... 242 8e-63 UniRef50_B8DUD9 Pseudouridine synthase n=8 Tax=Bifidobacterium R... 242 9e-63 UniRef50_Q6SI36 Pseudouridine synthase n=1 Tax=uncultured marine... 242 9e-63 UniRef50_Q3AVD5 Pseudouridine synthase n=3 Tax=Cyanobacteria Rep... 242 9e-63 UniRef50_C0D9T3 Pseudouridine synthase n=1 Tax=Clostridium aspar... 242 1e-62 UniRef50_Q49YI4 Pseudouridine synthase n=2 Tax=Staphylococcus Re... 242 1e-62 UniRef50_Q2W4E4 Pseudouridine synthase n=20 Tax=cellular organis... 242 1e-62 UniRef50_Q1YVK2 Pseudouridine synthase n=3 Tax=Gammaproteobacter... 242 1e-62 UniRef50_A9ITY6 Pseudouridine synthase n=6 Tax=Betaproteobacteri... 241 1e-62 UniRef50_A6GNL7 Pseudouridine synthase n=2 Tax=Betaproteobacteri... 241 2e-62 UniRef50_C7H4Z6 Pseudouridine synthase n=1 Tax=Faecalibacterium ... 241 2e-62 UniRef50_B6IXC3 Pseudouridine synthase n=2 Tax=Alphaproteobacter... 241 2e-62 UniRef50_Q688C2 Pseudouridine synthase n=1 Tax=Mycoplasma mobile... 241 2e-62 UniRef50_Q4A5Z2 Pseudouridine synthase n=2 Tax=Mycoplasma synovi... 241 3e-62 UniRef50_Q2NSN0 Pseudouridine synthase n=7 Tax=Gammaproteobacter... 241 3e-62 UniRef50_A7HJ83 RNA-binding S4 domain protein n=3 Tax=Thermotoga... 241 3e-62 UniRef50_C6VP86 Pseudouridine synthase n=4 Tax=Lactobacillaceae ... 241 3e-62 UniRef50_B0RHF4 Pseudouridine synthase n=3 Tax=Actinobacteria (c... 240 4e-62 UniRef50_A6DMJ6 Pseudouridine synthase n=1 Tax=Lentisphaera aran... 240 4e-62 UniRef50_Q15Q67 Pseudouridine synthase n=2 Tax=Bacteria RepID=Q1... 240 4e-62 UniRef50_C7PP04 Pseudouridine synthase n=1 Tax=Chitinophaga pine... 240 5e-62 UniRef50_B9ZS86 Pseudouridine synthase n=2 Tax=Chromatiales RepI... 240 5e-62 UniRef50_D2B9T7 Pseudouridine synthase n=18 Tax=Actinobacteria (... 240 5e-62 UniRef50_Q2SRP5 Ribosomal large subunit pseudouridine synthase B... 240 5e-62 UniRef50_UPI0001BC54DC ribosomal large subunit pseudouridine syn... 240 6e-62 UniRef50_Q1Q1Q0 Pseudouridine synthase n=1 Tax=Candidatus Kuenen... 240 6e-62 UniRef50_B4RA72 Pseudouridine synthase n=4 Tax=Caulobacteraceae ... 240 6e-62 UniRef50_B6W7S5 Pseudouridine synthase n=2 Tax=Anaerococcus RepI... 240 7e-62 UniRef50_A3UFV9 Pseudouridine synthase n=1 Tax=Oceanicaulis alex... 240 7e-62 UniRef50_A6LUE3 Pseudouridine synthase n=3 Tax=Clostridium RepID... 238 1e-61 UniRef50_C0BLA3 Pseudouridine synthase n=1 Tax=Flavobacteria bac... 238 1e-61 UniRef50_A6DF49 Pseudouridine synthase n=1 Tax=Lentisphaera aran... 238 1e-61 UniRef50_B0SBU8 Pseudouridine synthase n=2 Tax=Leptospira biflex... 238 1e-61 UniRef50_A0LG30 Pseudouridine synthase n=1 Tax=Syntrophobacter f... 238 2e-61 UniRef50_O32068 Uncharacterized RNA pseudouridine synthase ytzG ... 238 2e-61 UniRef50_Q9I5J6 Ribosomal small subunit pseudouridine synthase A... 238 2e-61 UniRef50_Q5F8V3 Pseudouridine synthase n=21 Tax=Proteobacteria R... 238 2e-61 UniRef50_C6HYA4 Pseudouridine synthase n=1 Tax=Leptospirillum fe... 238 2e-61 UniRef50_Q0F269 Pseudouridine synthase n=1 Tax=Mariprofundus fer... 237 3e-61 UniRef50_UPI0001BC42E2 ribosomal small subunit pseudouridine syn... 237 4e-61 UniRef50_D1B9Q8 Pseudouridine synthase n=1 Tax=Thermanaerovibrio... 237 4e-61 UniRef50_C7NBL1 Pseudouridine synthase n=3 Tax=Leptotrichia RepI... 237 4e-61 UniRef50_A5CX60 Pseudouridine synthase n=1 Tax=Candidatus Vesico... 237 4e-61 UniRef50_B3PMD0 Pseudouridine synthase n=2 Tax=Mycoplasma RepID=... 236 4e-61 UniRef50_Q21JF0 Pseudouridine synthase n=2 Tax=Gammaproteobacter... 236 6e-61 UniRef50_A1UU09 Pseudouridine synthase n=4 Tax=Bartonella RepID=... 236 7e-61 UniRef50_A8U4V7 Pseudouridine synthase n=10 Tax=Lactobacillales ... 236 7e-61 UniRef50_Q5SLZ5 Pseudouridine synthase n=4 Tax=Bacteria RepID=Q5... 236 9e-61 UniRef50_A3JEU2 Pseudouridine synthase n=2 Tax=Marinobacter RepI... 236 9e-61 UniRef50_B6BUN1 Pseudouridine synthase n=1 Tax=beta proteobacter... 236 9e-61 UniRef50_A5KLG0 Pseudouridine synthase n=8 Tax=Bacteria RepID=A5... 235 1e-60 UniRef50_B1M661 Pseudouridine synthase n=2 Tax=Alphaproteobacter... 235 1e-60 UniRef50_B1KQS3 Pseudouridine synthase n=20 Tax=Gammaproteobacte... 235 1e-60 UniRef50_B4RM91 Pseudouridine synthase n=8 Tax=Betaproteobacteri... 235 1e-60 UniRef50_B6EJI1 Pseudouridine synthase n=8 Tax=Gammaproteobacter... 235 2e-60 UniRef50_B1ZYG8 Pseudouridine synthase n=3 Tax=Verrucomicrobia R... 235 2e-60 UniRef50_A8SIK9 Pseudouridine synthase n=1 Tax=Parvimonas micra ... 234 2e-60 UniRef50_C1XNC4 Pseudouridine synthase n=1 Tax=Meiothermus ruber... 234 3e-60 UniRef50_A9AXM1 Pseudouridine synthase n=3 Tax=Bacteria RepID=A9... 234 3e-60 UniRef50_Q01Z61 Pseudouridine synthase n=1 Tax=Candidatus Soliba... 234 3e-60 UniRef50_A1S9T3 Pseudouridine synthase n=1 Tax=Shewanella amazon... 234 4e-60 UniRef50_C6XB83 RNA-binding S4 domain protein n=2 Tax=Methylophi... 234 4e-60 UniRef50_B2IHU4 Pseudouridine synthase n=1 Tax=Beijerinckia indi... 233 4e-60 UniRef50_C0EB54 Pseudouridine synthase n=1 Tax=Clostridium methy... 233 4e-60 UniRef50_A6LLC7 RNA-binding S4 domain protein n=1 Tax=Thermosiph... 233 5e-60 UniRef50_A8G0B7 Pseudouridine synthase n=19 Tax=Shewanella RepID... 233 5e-60 UniRef50_A0M7H0 Ribosomal large subunit pseudouridine synthase F... 233 5e-60 UniRef50_A6WK95 Pseudouridine synthase n=12 Tax=Gammaproteobacte... 233 6e-60 Sequences not found previously or not previously below threshold: >UniRef50_Q83IR6 Ribosomal large subunit pseudouridine synthase F n=90 Tax=Bacteria RepID=RLUF_SHIFL Length = 290 Score = 359 bits (921), Expect = 9e-98, Method: Composition-based stats. Identities = 286/290 (98%), Positives = 288/290 (99%) Query: 1 MLPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIE 60 MLPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGD+VKVNGQLIE Sbjct: 1 MLPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDIVKVNGQLIE 60 Query: 61 PREAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHG 120 PREAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHG Sbjct: 61 PREAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHG 120 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRIT 180 DLVNKILRAGNDHEKEYLVTVDKPIT+EFIRGM AGVPILGTVTKKCKVKKEAPFVFRIT Sbjct: 121 DLVNKILRAGNDHEKEYLVTVDKPITDEFIRGMGAGVPILGTVTKKCKVKKEAPFVFRIT 180 Query: 181 LVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSS 240 LVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSS Sbjct: 181 LVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSS 240 Query: 241 SEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKGR 290 SE KPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKGR Sbjct: 241 SEAKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKGR 290 >UniRef50_Q8Z1V3 Ribosomal large subunit pseudouridine synthase F n=235 Tax=Bacteria RepID=RLUF_SALTI Length = 289 Score = 317 bits (812), Expect = 3e-85, Method: Composition-based stats. Identities = 266/290 (91%), Positives = 277/290 (95%), Gaps = 1/290 (0%) Query: 1 MLPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIE 60 ML D+S RLNKYISESGICSRREADR+IEQGNVF+NGKRA IGDQV GDVVKVNG+LIE Sbjct: 1 MLTDTSTRLNKYISESGICSRREADRFIEQGNVFINGKRAAIGDQVVAGDVVKVNGRLIE 60 Query: 61 PREAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHG 120 PREA+DLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKR+FPIGRLDKDSQGLIFLTNHG Sbjct: 61 PREADDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRIFPIGRLDKDSQGLIFLTNHG 120 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRIT 180 DLVNKILRAGNDHEKEYLVTVDKPIT+EFIRGM AGVPILGTVTKKCKVKKEAPFVFRIT Sbjct: 121 DLVNKILRAGNDHEKEYLVTVDKPITDEFIRGMGAGVPILGTVTKKCKVKKEAPFVFRIT 180 Query: 181 LVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSS 240 LVQGLNRQIRRMCE+FGYEV KLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIE SS Sbjct: 181 LVQGLNRQIRRMCEYFGYEVTKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIEGSS 240 Query: 241 SEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKGR 290 SE KPKAKAKPKTAGIKRPVV +EK+ EK RPAS+GKRFTSPGRKKKGR Sbjct: 241 SEAKPKAKAKPKTAGIKRPVVAIEKSNEK-ARPASSGKRFTSPGRKKKGR 289 >UniRef50_Q7MMX9 Pseudouridine synthase n=43 Tax=Vibrionaceae RepID=Q7MMX9_VIBVY Length = 347 Score = 298 bits (765), Expect = 1e-79, Method: Composition-based stats. Identities = 157/296 (53%), Positives = 192/296 (64%), Gaps = 9/296 (3%) Query: 1 MLPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIE 60 M D++ RLNKYISE+G CSRREAD+ IEQG V +NGK+ +G +V PGD V V+G+ + Sbjct: 1 MSQDNAKRLNKYISETGFCSRREADKLIEQGRVTINGKQPEMGTKVLPGDDVCVDGKPVA 60 Query: 61 PREAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHG 120 + E V IALNKP GI TTE NIVDF+ H KR+FPIGRLDK S GLIFLTN G Sbjct: 61 AK--EKPVYIALNKPTGITCTTERNIPGNIVDFIGHKKRIFPIGRLDKPSDGLIFLTNDG 118 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRIT 180 D+VNKILRAGN HEKEY+V VDKPIT EFI+ MS+GV IL TVT CKV +E F FRI Sbjct: 119 DIVNKILRAGNHHEKEYVVRVDKPITPEFIKAMSSGVNILDTVTLPCKVTQETKFSFRIV 178 Query: 181 LVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLI---- 236 L QGLNRQIRRMCE GYEV KL R RIMN+SL GIP G+WR LTDDE+ ++ + Sbjct: 179 LTQGLNRQIRRMCEALGYEVFKLRRVRIMNISLDGIPNGKWRYLTDDEVTEILAMCEGSV 238 Query: 237 ---ENSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKG 289 E S + K + K A + + + + + + K + + Sbjct: 239 GTEEASRVDAKGRRIRKATDAKLFDSREENQTSTARRNQKQRTFKGNNADEFRHAP 294 >UniRef50_C7ICF2 Pseudouridine synthase n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7ICF2_9CLOT Length = 235 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 86/236 (36%), Positives = 135/236 (57%), Gaps = 9/236 (3%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPRE 63 S +RL KY++ +G+ SRR+A+ I+QG V +N +G V DVV V+G+ + E Sbjct: 2 SEIRLQKYLAHAGVASRRKAEEMIKQGRVAVNNVIIENMGATVTCNDVVTVDGKPVTTEE 61 Query: 64 AEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHS-KRVFPIGRLDKDSQGLIFLTNHGD 121 A+ V I LNKPVG VST++D R ++D V + KR++P+GRLD D+ GLI LTN GD Sbjct: 62 AK--VYIMLNKPVGYVSTSKDQFGRPAVIDLVKDAGKRLYPVGRLDYDTSGLILLTNDGD 119 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA----PFVF 177 ++ ++ K Y + + I G+ I T + + + Sbjct: 120 FTYRLTHPKHEVNKVYEAVISGFPDKNEITRFETGLKIDDYQTSPAEFEVLNKKGINTLV 179 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF 233 RIT+ +G NRQ+R+MCE G++V L+R +I ++L +P G+WR L+D+E+ L+ Sbjct: 180 RITIHEGKNRQVRKMCEAIGHKVLTLKRIQIGPIALENLPEGKWRHLSDNEVKILY 235 >UniRef50_C7PFL3 Pseudouridine synthase n=3 Tax=Bacteria RepID=C7PFL3_CHIPD Length = 389 Score = 289 bits (740), Expect = 9e-77, Method: Composition-based stats. Identities = 144/287 (50%), Positives = 192/287 (66%), Gaps = 2/287 (0%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPRE 63 D S+ LNK+IS++G CSRREAD I G V LN + A +G++ KPGD V+V+G LI + Sbjct: 2 DQSISLNKFISDTGYCSRREADNLITSGRVLLNDRPAALGNRYKPGDTVEVDGSLITAAK 61 Query: 64 AEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLV 123 E V +ALNKP GI +TTE +DNI+ FVN+ +R+FPIGRLDKDS+GLIFLTN GD++ Sbjct: 62 KEKRVYLALNKPPGITTTTELHIKDNIISFVNYPQRIFPIGRLDKDSEGLIFLTNDGDII 121 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQ 183 NKILRA N+HEKEY+V V+KPI F+ MS GVPIL T T CKV+ FRITL Q Sbjct: 122 NKILRAANNHEKEYVVRVNKPIDTNFLHQMSQGVPILDTRTLPCKVQMTGRQTFRITLTQ 181 Query: 184 GLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSSSEV 243 GLNRQIRRMCE+ GY V L+R RIMNV L +PLG+WR L++ E+ + + + +S+ Sbjct: 182 GLNRQIRRMCEYLGYTVVGLQRVRIMNVRLDKLPLGKWRYLSEAEIAFIKESVADSTKVS 241 Query: 244 --KPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKK 288 + A+ KTA + + +PA+ KR +P + ++ Sbjct: 242 GESKPSGARRKTAKPVEEKEHLRTGSTPKNKPATGHKRVAAPAKHRE 288 >UniRef50_C6J9Y4 Pseudouridine synthase n=2 Tax=Clostridiales RepID=C6J9Y4_9FIRM Length = 323 Score = 285 bits (729), Expect = 2e-75, Method: Composition-based stats. Identities = 132/286 (46%), Positives = 183/286 (63%), Gaps = 3/286 (1%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPRE 63 D +R+NKY+SE+GICSRREADR IE+G + +NGK+A G +V D + + + + Sbjct: 11 DEKIRINKYLSEAGICSRREADRMIEEGRITVNGKKAESGQKVSLEDEICADNIPVH--K 68 Query: 64 AEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDL 122 E VL+ NKP GIV +T+ + + D++++ RV+P+GRLDK+SQGL+ LTN GDL Sbjct: 69 NEKKVLLLFNKPRGIVCSTKQQFDETTVTDYLDYPLRVYPVGRLDKESQGLLLLTNEGDL 128 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLV 182 VNKI+RAGN HEKEY VTV+KP+ EF+R MS GVP+L TVT+ C+V + FRI L Sbjct: 129 VNKIMRAGNYHEKEYFVTVNKPVDREFVRRMSKGVPVLDTVTRPCRVVQTGECSFRIILT 188 Query: 183 QGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSSSE 242 QGLNRQIRRMC + GYEV+KL+R RIMN++L GI GE+R++T E +L L+E+S+SE Sbjct: 189 QGLNRQIRRMCRYLGYEVQKLKRIRIMNLTLDGIREGEYREITAQEWEELNHLLESSTSE 248 Query: 243 VKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKK 288 + + + K + G R R + Sbjct: 249 TVIRTGEQNGNSSDHANERAGAKAGQGSKGVLPAGYRDHKQQRVRS 294 >UniRef50_B3E7C4 Pseudouridine synthase n=6 Tax=Desulfuromonadales RepID=B3E7C4_GEOLS Length = 274 Score = 284 bits (728), Expect = 2e-75, Method: Composition-based stats. Identities = 88/270 (32%), Positives = 144/270 (53%), Gaps = 16/270 (5%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKP-GDVVKVNGQLIEPREA 64 RL K IS +GI SRR A+ I G V +NG+ T +G + P D++ ++GQ ++P A Sbjct: 3 ERLQKIISAAGITSRRAAEEMILAGRVTVNGQVVTELGSKADPAKDLIALDGQPVKP--A 60 Query: 65 EDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHS-KRVFPIGRLDKDSQGLIFLTNHGDL 122 E + L+KP G V++ +D R + + V +R+FP+GRLD +S+GL+ LTN G Sbjct: 61 ETFYYVLLHKPAGYVTSLKDPQGRQLVTELVKDVGERLFPVGRLDYNSEGLLLLTNDGAW 120 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK----KEAPFVFR 178 N+++ + +KEY V V I + I+ ++ GV + T V+ ++ Sbjct: 121 ANRLMHPRHQVDKEYHVRVRGKIDPQQIKKLADGVELEDGPTGATTVRLLKNDQSNDWLS 180 Query: 179 ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDL------ 232 +T+ +G NRQ+RRMC G V +L R R N++L G+ GE+R L+ +E L Sbjct: 181 VTIREGRNRQVRRMCAAVGLFVVRLRRIRYGNLTLGGLQPGEYRLLSREEAQALDAPPPV 240 Query: 233 FKLIENSSSEVKPKAKAKPKTAGIKRPVVK 262 + + ++ VK + +T G + P K Sbjct: 241 KQREQRMAAPVKSSTTPQSQTPGKRPPRRK 270 >UniRef50_C9L6I1 Pseudouridine synthase n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L6I1_RUMHA Length = 271 Score = 284 bits (727), Expect = 3e-75, Method: Composition-based stats. Identities = 133/284 (46%), Positives = 189/284 (66%), Gaps = 21/284 (7%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAED 66 +RLNKY+S++G+CSRREADR IE+ V ++GK A G QV+ +KV+G+ I+ E Sbjct: 1 MRLNKYLSDAGVCSRREADRLIEEKRVLVDGKPAVQGMQVEDFQEIKVDGKAIKRE--EK 58 Query: 67 LVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNKI 126 VL+ +KP GI T + N++ ++N+ RV+ GRLDKDS+GL+ LTN G+LVN+I Sbjct: 59 KVLLVFHKPKGIECTANPNVKKNVISYINYPIRVYYAGRLDKDSEGLLLLTNQGELVNQI 118 Query: 127 LRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQGLN 186 ++AG+ HEKEYLVTVDKP+TEEF++ M GVP+LGT+T+KCKV+KE+ VFRITL QGLN Sbjct: 119 MKAGSYHEKEYLVTVDKPVTEEFLQSMREGVPVLGTITRKCKVEKESEKVFRITLTQGLN 178 Query: 187 RQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSSSEVKPK 246 RQIRRMC + GYEV KL+R RIMN+ L +P+G +R+ T +EL +L + I Sbjct: 179 RQIRRMCNYLGYEVVKLKRIRIMNIELGNLPIGSYREATKEELDELKRQISE-------- 230 Query: 247 AKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKGR 290 + + E KG +P N ++ +P + +K + Sbjct: 231 -----------KAEKRQETDFHKGKKPVKNAGKYRNPSKVRKQK 263 >UniRef50_A4J3M3 Pseudouridine synthase n=167 Tax=Bacteria RepID=A4J3M3_DESRM Length = 309 Score = 281 bits (720), Expect = 2e-74, Method: Composition-based stats. Identities = 96/302 (31%), Positives = 153/302 (50%), Gaps = 19/302 (6%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKP-GDVVKVNGQLIEPRE 63 RL K ++++G+ SRR ++ I G V +NGK T +G +V P D ++V G+ + P Sbjct: 2 EERLQKILAKAGVASRRHSEELIISGQVKVNGKTVTEMGLKVDPTKDKIEVKGKPLPPL- 60 Query: 64 AEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHSK-RVFPIGRLDKDSQGLIFLTNHGD 121 E V + +NKP G V+T D +R +VD + + RV+P+GRLD DS+GL+ LTN G+ Sbjct: 61 -EKKVYLLMNKPRGYVTTLSDERDRKTVVDLLKGVEQRVYPVGRLDYDSEGLLLLTNDGE 119 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKE----APFVF 177 L + + +K YL VD E ++ M+ G+ + T V+ + Sbjct: 120 LTQALTHPKHKVKKTYLAKVDGIPETEELKAMAKGLVLEDGPTAPADVRLAGTGDNRALL 179 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLI- 236 I++ +G NRQ+RRMCEH GY+V +L RTRI + L + GE R LT EL +L L+ Sbjct: 180 EISIHEGRNRQVRRMCEHIGYKVLRLRRTRIGTLELGSLKSGEVRALTKKELRELASLVG 239 Query: 237 --------ENSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKK 288 + ++ K K + IK V + + + ++ T G+ K Sbjct: 240 LKQNYNDMQLTTEVQKKKPSPCGRVGRIKGKVSEQKSNRSAKSKVNEFFEKGTLRGKNSK 299 Query: 289 GR 290 + Sbjct: 300 SK 301 >UniRef50_Q21MN5 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q21MN5_SACD2 Length = 324 Score = 281 bits (719), Expect = 2e-74, Method: Composition-based stats. Identities = 139/296 (46%), Positives = 181/296 (61%), Gaps = 6/296 (2%) Query: 1 MLPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIE 60 M DS+VRLNK+IS+SG CSRREAD+ I V +NG +G V+ GDVV V+ Q + Sbjct: 1 MTFDSAVRLNKFISDSGHCSRREADKLIASDRVKINGLLPELGAVVESGDVVTVDDQPLR 60 Query: 61 P--REAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTN 118 + D + IA NKP GI TT+ + NIVD ++H +R+FPIGRLDK S+GLI LT+ Sbjct: 61 ASAADKTDRIYIAYNKPFGITCTTDQTVKGNIVDAIDHDERIFPIGRLDKPSEGLILLTS 120 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFR 178 GD+VNKILRA N H+KEY+VTV+K + F MS G+PILGT+TK CKV+ F+ Sbjct: 121 DGDIVNKILRAENAHDKEYIVTVNKNLAPNFAEKMSRGLPILGTITKPCKVRVIGKTTFK 180 Query: 179 ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIEN 238 I L QGLNRQIRRMC++ GY+VK+L RTRIMN+ L + G+WR LT EL L K Sbjct: 181 IILTQGLNRQIRRMCDYLGYDVKQLVRTRIMNIELGKLKPGQWRRLTKVELDLLTKATSQ 240 Query: 239 SSSEVKPKAKAK----PKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKGR 290 SS A AK P + K++K + + + T R K + Sbjct: 241 SSKTAIKGANAKSSASPTATKPRVAKPKVKKEPKDLDKHGRPKNKSTGVKRGAKSK 296 >UniRef50_A9KPL1 Pseudouridine synthase n=63 Tax=Bacteria RepID=A9KPL1_CLOPH Length = 477 Score = 280 bits (718), Expect = 3e-74, Method: Composition-based stats. Identities = 146/297 (49%), Positives = 193/297 (64%), Gaps = 14/297 (4%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPRE 63 + +VR+NKY+SESGICSRREAD I +G V ++G+ A +G +V PG V + + + Sbjct: 16 EKAVRINKYLSESGICSRREADTRIAKGEVTIDGEVAVMGSKVLPGQKVVLGKKEVSRE- 74 Query: 64 AEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLV 123 E +VLIA +KP GIV TTE E DNI+D++ +S+R++PIGRLDKDS+GLIFLTN+GD+V Sbjct: 75 -EKMVLIAFHKPKGIVCTTEKREPDNIIDYIKYSQRIYPIGRLDKDSEGLIFLTNNGDIV 133 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQ 183 NKILRAGN HEKEY+VTV+KPIT F++GM+ GVPIL TVTK C ++ FRI L Q Sbjct: 134 NKILRAGNHHEKEYIVTVNKPITAAFLKGMAGGVPILDTVTKPCTLEAIDKVTFRIILTQ 193 Query: 184 GLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSSSEV 243 GLNRQIRRMCEHF Y+V KL R RIMNV+L + +G +R+LTD EL + + IE S++E Sbjct: 194 GLNRQIRRMCEHFDYKVTKLVRIRIMNVNLGRLKVGGYRNLTDKELEGIKEQIELSNNEA 253 Query: 244 ------------KPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKK 288 + KT G K + + KR + K + Sbjct: 254 LNLEPDDEFPIERVNVANIAKTHGNNVATGKRRTKDKYFAEKKDDKKRSDATRNKAE 310 >UniRef50_B0TFD8 Pseudouridine synthase n=18 Tax=Bacteria RepID=B0TFD8_HELMI Length = 333 Score = 280 bits (716), Expect = 5e-74, Method: Composition-based stats. Identities = 90/301 (29%), Positives = 147/301 (48%), Gaps = 14/301 (4%) Query: 2 LPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVK-PGDVVKVNGQLI 59 + +VRL K ++ G+ SRREA+ I G V +NG G +V DV++V+G+++ Sbjct: 1 MDSQTVRLQKLLAAHGVASRREAEAMIRAGRVRINGTVVREQGVRVDGARDVIEVDGRIL 60 Query: 60 EPREAEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLT 117 + REA + AL KP G+V+T +D R ++ ++ ++RV+P+GRLD+D++GL+ LT Sbjct: 61 KRREA--PLYYALYKPRGVVTTCKDPQGRQTVIGLLSGVNERVYPVGRLDRDTEGLLLLT 118 Query: 118 NHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKV----KKEA 173 N G L ++ EK Y + ++ ++ ++ GV + VT +V ++ Sbjct: 119 NDGQLAFRLTHPRFGVEKTYRARLRGDVSAGALKALAEGVQLEDGVTAPAQVRLLRREGD 178 Query: 174 PFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF 233 I + +G RQIRRM + G+ V LER ++L + GE R LT EL L Sbjct: 179 ATWIEIKIHEGRKRQIRRMGDAIGHPVIDLERIAFGPITLGKLKPGEVRPLTSAELRALK 238 Query: 234 KLIENSSS----EVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKG 289 + + + A+P V K A KG G R S G +G Sbjct: 239 SAAGMKEATAHGRDERRQTARPSRTAATAKVASAHKDAGKGVFKGLKGLREASNGGDGRG 298 Query: 290 R 290 + Sbjct: 299 K 299 >UniRef50_A6EPE0 Pseudouridine synthase n=1 Tax=unidentified eubacterium SCB49 RepID=A6EPE0_9BACT Length = 291 Score = 279 bits (714), Expect = 1e-73, Method: Composition-based stats. Identities = 143/269 (53%), Positives = 182/269 (67%), Gaps = 8/269 (2%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAEDL 67 RLNK IS+SG CSRR+AD+ IE+G V LNG ++GD+ P DV+ V G LI E +L Sbjct: 9 RLNKAISDSGYCSRRQADKLIEEGKVTLNGNPVSLGDRAMPDDVIHVEGNLIT--ENNNL 66 Query: 68 VLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNKIL 127 V I LNKPVGI TT+ N+VD+++H +R+F +GRLDK S+GL+ +TN GD+VNKIL Sbjct: 67 VYIILNKPVGITCTTDLRVEGNVVDYIDHKERIFHVGRLDKPSEGLLLMTNDGDIVNKIL 126 Query: 128 RAGNDHEKEYLVTVDKPITEEFIRGMSAGVPIL--GTVTKKCKVKKEAPFVFRITLVQGL 185 RAGN HEKEY V VD+PIT EFIR M G+P+ T TKKC V++ + FVFRI LVQGL Sbjct: 127 RAGNSHEKEYFVKVDRPITTEFIRRMGNGIPLEELETTTKKCFVEQVSRFVFRIILVQGL 186 Query: 186 NRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSSS---- 241 NRQIRRMCE+ YEV +L+R RIMN+ L +P GEWRDLT +EL L + S + Sbjct: 187 NRQIRRMCEYLDYEVMELKRERIMNIELGDLPYGEWRDLTKEELQGLKDAVAKSENDSFI 246 Query: 242 EVKPKAKAKPKTAGIKRPVVKMEKTAEKG 270 + + K KA PKT R + E + Sbjct: 247 DREEKRKAAPKTGDANRNRPRNEAPKRES 275 >UniRef50_C7MNA2 Pseudouridine synthase n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MNA2_CRYCD Length = 296 Score = 277 bits (710), Expect = 2e-73, Method: Composition-based stats. Identities = 75/250 (30%), Positives = 128/250 (51%), Gaps = 11/250 (4%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEP 61 D +RL K+++ +G+ SRR ++R I G V +NG T +G +V P D V V+G ++ Sbjct: 47 DFPLRLQKFLARAGVASRRGSERLISAGRVAVNGIVITELGTKVDPLVDEVCVDGAIVT- 105 Query: 62 REAEDLVLIALNKPVGIVSTTED-GERDNIVDFVN--HSKRVFPIGRLDKDSQGLIFLTN 118 V +ALNKP GI++T +D R + D + +FPIGRLD+D+ GL+ + Sbjct: 106 -WGAPAVTLALNKPAGIITTMKDLRGRRCVADIMPTEQYPGLFPIGRLDQDTTGLLLFST 164 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKK----EAP 174 G+L N +L + K Y T++ I + + +++G+ + +T +V + Sbjct: 165 DGNLGNALLHPSHGVSKVYRATIEGSIGQAALEQLASGILLDDGMTAPARVSVVQAGKKH 224 Query: 175 FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFK 234 V + L +G Q++RMC+ G+ V KL R + L+G+ G +R L EL L+ Sbjct: 225 SVIELELHEGRKHQVKRMCQAVGHPVVKLHRASFGPIDLAGLATGAYRRLEGAELSVLYN 284 Query: 235 LIENSSSEVK 244 + + Sbjct: 285 AAGLCCPDDE 294 >UniRef50_Q3IC94 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q3IC94_PSEHT Length = 327 Score = 275 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 145/306 (47%), Positives = 189/306 (61%), Gaps = 25/306 (8%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAEDL 67 RLNK+IS++G CSRREAD+YIE G V +NG R +G +V DVV V+G+ ++ Sbjct: 6 RLNKFISDTGFCSRREADKYIEDGRVTVNGIRPEMGVKVSSTDVVLVDGKTLKAI--PKR 63 Query: 68 VLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNKIL 127 V IA NKPVGI TTE + NIV VN+ R+FPIGRLD+ S+GLIFLTN GD+VNKIL Sbjct: 64 VYIAYNKPVGITCTTERKIQSNIVKAVNYPDRIFPIGRLDRPSEGLIFLTNEGDIVNKIL 123 Query: 128 RAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQGLNR 187 RAGN+HEKEY+VTVDKP+ +F+ M GVPIL T+TKKCKV + F I L QGLNR Sbjct: 124 RAGNNHEKEYVVTVDKPLNRQFVAKMGNGVPILDTITKKCKVTQTGAQQFTIILTQGLNR 183 Query: 188 QIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSSS------ 241 QIRRMCE+ GYEV L+R RIMNV+L G+ +G+WR LT+ E+ + I +S Sbjct: 184 QIRRMCEYLGYEVVTLKRVRIMNVTLKGLKVGQWRHLTEQEMAIINNSISDSGKTQEHSV 243 Query: 242 --------EVKPKAKAKPKTAGIKRPV---------VKMEKTAEKGGRPASNGKRFTSPG 284 + P+A AKP+ K+ + E+T E+ + + S Sbjct: 244 YDEANALQQQSPQAVAKPQKTSDKKRDFQGENPKRFNQGERTEERKKERSKTPYQKRSTT 303 Query: 285 RKKKGR 290 K + Sbjct: 304 YVGKPK 309 >UniRef50_UPI000196BAD7 hypothetical protein CATMIT_00510 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196BAD7 Length = 247 Score = 275 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 83/239 (34%), Positives = 127/239 (53%), Gaps = 12/239 (5%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREA 64 RL K I++SG SRR+A+ I+QG V +NG+ T +G +V D + VNG+LI Sbjct: 2 EERLQKVIAQSGYTSRRKAEELIQQGKVTVNGEVVTVLGTKVTKKDTICVNGKLIN---K 58 Query: 65 EDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTNHGDL 122 ED V KP V T D R + D+ ++RV+P+GRLD D+ G +F+TN G+ Sbjct: 59 EDKVYYLFYKPEKCVCTMSDEHDRTCVADYFADSNERVYPVGRLDYDTTGALFMTNDGEF 118 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKV------KKEAPFV 176 N I+ + EK Y V+V +T+ + G+ + G T C++ ++ + Sbjct: 119 ANLIMHPSSHLEKVYEVSVKGLLTKAEKNQLEKGIYLEGVKTLPCEIAITGNDEEHGTTM 178 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 I LV+G NRQI++M E G+ VK+L R I + L G+ G +R L E+ L + Sbjct: 179 LLIRLVEGKNRQIKKMFEEVGHPVKRLRRIMIGPIDLKGLTPGTYRRLKPHEVNVLRTM 237 >UniRef50_B2A4P2 Pseudouridine synthase n=2 Tax=Clostridia RepID=B2A4P2_NATTJ Length = 238 Score = 274 bits (701), Expect = 3e-72, Method: Composition-based stats. Identities = 84/240 (35%), Positives = 139/240 (57%), Gaps = 7/240 (2%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEPREA 64 +RL K++S +GI SRR+++ I+QG V +NG+ T +G ++ P D VKV+G+ I Sbjct: 1 MRLQKFMSRAGIASRRKSEELIQQGRVTVNGQVITRLGTKINPDTDTVKVDGEPITQE-- 58 Query: 65 EDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLV 123 E V I LNKP +++ +D R ++D + +RV+P+GRLD DS+GL+ LTN G+L Sbjct: 59 ESNVYIMLNKPKDYITSKDDPQGRKTVMDLIQVKERVYPVGRLDYDSRGLVLLTNDGELA 118 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA--PFVFRITL 181 N+++ + K Y+V VDK ++ + + G+ + + K V+ + +I L Sbjct: 119 NRLMHPKYNIPKTYMVKVDKLPLQDKLDNLVNGIYLEEGLCKADHVEILDTKNNILKIIL 178 Query: 182 VQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSSS 241 +G RQIRRM G EVK L+R + ++L + G +R LT DE+ ++ KL + + Sbjct: 179 SEGRKRQIRRMLASLGIEVKDLKRDSLGTLTLKDLSEGNYRKLTKDEIDNIKKLAGLTDN 238 >UniRef50_UPI0001693918 pseudouridylate synthase n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001693918 Length = 249 Score = 273 bits (699), Expect = 5e-72, Method: Composition-based stats. Identities = 80/251 (31%), Positives = 132/251 (52%), Gaps = 13/251 (5%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPG-DVVKVNGQLIEPRE 63 RL K ++ +G+ SRR+ + I G V +N K T+G +V P DV+KV+G+ I+ Sbjct: 2 EERLQKVLAAAGVASRRKCEEIILAGRVEVNDKVVSTLGVKVNPHQDVIKVDGRAIQ--- 58 Query: 64 AEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTNHGD 121 ++ + I NKP G++++ D E R + DF+ +RV+P+GRLD D++GL+ LTN G+ Sbjct: 59 NQEKIYILFNKPKGVITSVSDPEGRRVVGDFLKGIKERVYPVGRLDYDTEGLLILTNDGE 118 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA------PF 175 N + + K Y TV + + GV + +T +V+ Sbjct: 119 FANMVTHPRHHVSKTYHATVKGVPHGSVLEKLREGVKLEDGMTAPAEVEYHDIDPDKKQS 178 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 V IT+ +G NRQ+RRM E GY V +L+R + ++ L G+P G++R + +E+ L Sbjct: 179 VISITIYEGKNRQVRRMFEAVGYPVTRLKRVKFGSIPLVGLPRGKFRRMRKEEVQALLNE 238 Query: 236 IENSSSEVKPK 246 S K + Sbjct: 239 ASQSHKVQKGQ 249 >UniRef50_D1CFA0 Pseudouridine synthase n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CFA0_THET1 Length = 253 Score = 273 bits (699), Expect = 5e-72, Method: Composition-based stats. Identities = 82/244 (33%), Positives = 135/244 (55%), Gaps = 8/244 (3%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEPR 62 + +RL+K +++ G+ SRR A+R I +G V +NG+ T G P D ++V+G+L+ R Sbjct: 2 NEPIRLHKLLAQMGVASRRAAERMIAEGRVSVNGRIVNTPGAMASPEDEIRVDGKLV--R 59 Query: 63 EAEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGD 121 + + I LNKP G++ST +D R ++D + S RV+P+GRLDKDS+GL+ LTN G+ Sbjct: 60 QQPKMRYILLNKPAGVLSTAKDERGRKTVIDLLGQSNRVYPVGRLDKDSEGLMLLTNDGE 119 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKE----APFVF 177 L +I K+Y+V V+ ++ ++ + GV + +K K Sbjct: 120 LAQRITHPRYGVHKQYMVEVEGYFSDRSLQDLLQGVELEDGFSKPLDAKIISRSRDKSKL 179 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIE 237 IT+ +G RQ+RR GY+VK+L R + +SL + GE+R+L+D E L + Sbjct: 180 LITMGEGRKRQVRRTLAALGYKVKRLTRVALGPLSLGNLKPGEYRELSDQEAKWLRSQLG 239 Query: 238 NSSS 241 + Sbjct: 240 LTPE 243 >UniRef50_C7M7R0 Pseudouridine synthase n=4 Tax=Bacteroidetes RepID=C7M7R0_CAPOD Length = 387 Score = 272 bits (696), Expect = 1e-71, Method: Composition-based stats. Identities = 86/238 (36%), Positives = 136/238 (57%), Gaps = 10/238 (4%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPRE 63 + VRLNKYI+++GICSRR AD YI GNV +NG+ T +G +VKP D V+ +G+L+ + Sbjct: 152 AEVRLNKYIADAGICSRRNADMYISAGNVTVNGEVMTTLGYRVKPTDEVRFDGKLLSSEK 211 Query: 64 AEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNH--SKRVFPIGRLDKDSQGLIFLTNHG 120 E I LNKP G ++TT D R ++D V + + R+ P+GRLD+ + GL+ LTN G Sbjct: 212 KE---YILLNKPKGFITTTNDEKGRKTVMDLVANATNVRILPVGRLDRATTGLLLLTNDG 268 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA---PFVF 177 +L K+ + K Y V +D+ + + + G+ + + + ++ Sbjct: 269 ELTKKLTHPTHGVRKIYHVILDRKLDYKDFMKVQDGLELEDGLIEVDEISYVNDKPKNEI 328 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 I + G NR +RR+ EH GY+V+KL+R ++ +P G WR LT E+I+L + Sbjct: 329 GIKIHSGRNRIVRRIFEHLGYQVEKLDRVVFAGLTKKDLPRGHWRRLTQQEVINLRNM 386 >UniRef50_A5IKF7 Pseudouridine synthase n=5 Tax=Thermotogaceae RepID=A5IKF7_THEP1 Length = 239 Score = 271 bits (695), Expect = 1e-71, Method: Composition-based stats. Identities = 78/241 (32%), Positives = 136/241 (56%), Gaps = 6/241 (2%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEPREAE 65 +RL++Y+S SG+ +R+E + I+QG V +NG+ G V DVV ++G+ + Sbjct: 1 MRLDRYLSNSGVGTRKEVKKLIKQGRVTVNGRVVLDPGHSVSENDVVVLDGETVN---FH 57 Query: 66 DLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNK 125 V I +KP G V++T+D + I++F+ K +FP+GRLDKD++GL+ +T+ GD ++ Sbjct: 58 RKVYILFHKPSGYVTSTKDPHSETIMEFLPPLKGIFPVGRLDKDAEGLLIITSDGDFAHR 117 Query: 126 ILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCK-VKKEAPFVFRITLVQG 184 ++ EKEY+V V+ +TE+ I + GV + K K V+K + +I + +G Sbjct: 118 VISPKWSVEKEYIVKVEGEVTEDKIEKLKNGVTLRDGFFAKAKCVEKLSNDTLKIVITEG 177 Query: 185 LNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDELIDLFKLIENSSSEV 243 QI+RM G L+RTRI + L + GE+R L+++E+ +F+ + Sbjct: 178 KYHQIKRMTVAVGLRTVHLKRTRIGRLVLPEDMKPGEYRFLSEEEVKKVFEREDQKEDTP 237 Query: 244 K 244 + Sbjct: 238 R 238 >UniRef50_Q24V73 Pseudouridine synthase n=3 Tax=Bacteria RepID=Q24V73_DESHY Length = 257 Score = 271 bits (695), Expect = 1e-71, Method: Composition-based stats. Identities = 76/246 (30%), Positives = 134/246 (54%), Gaps = 11/246 (4%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEP 61 P RL K ++++GI SRR A+ I QG V +NG+ T+G +V D + V+G+L+ Sbjct: 12 PRQEERLQKVLAQAGIASRRHAEEIILQGRVKVNGEVIRTLGTKVVSTDRIVVDGRLLSI 71 Query: 62 REAEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTNH 119 + D L+KP G +++ D R +++ + +RV+P+GRLD D+ GL+ LTN Sbjct: 72 PQN-DYAYYLLHKPTGYITSVTDPQGRKTVMELMPKIPRRVYPVGRLDYDTSGLLLLTND 130 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPF---- 175 GDL ++++ EK Y V V + I E+ ++ + GV + T ++++ +P Sbjct: 131 GDLAHRLMHPSYGVEKTYRVEVGEKIPEQALKRLEKGVLLEDGKTAPARIREVSPKGRGS 190 Query: 176 --VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDL 232 + IT+ +G NRQ+RRM + G+ + L+R R + L + G +R L+ E+ L Sbjct: 191 LPTYEITIHEGRNRQVRRMFKAVGFPLSTLKRLRFGPLELDPSLAPGAFRTLSKTEIQHL 250 Query: 233 FKLIEN 238 + ++ Sbjct: 251 RRAVKL 256 >UniRef50_A8SLU4 Pseudouridine synthase n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SLU4_9FIRM Length = 230 Score = 271 bits (694), Expect = 2e-71, Method: Composition-based stats. Identities = 89/232 (38%), Positives = 141/232 (60%), Gaps = 5/232 (2%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAED 66 +R+NK+I+ SG CSRR AD +EQG VF+NGK AT G + D V V G+ I+ EA+ Sbjct: 1 MRINKFIANSGYCSRRNADLLLEQGKVFVNGKLATKGIDISENDEVLVEGKKIKLEEAKK 60 Query: 67 LVLIALNKPVGIVSTTEDG-ERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNK 125 LNKP+G ST + + ++D ++ +R++P+GRLDKDS GL+ LTN GDL + Sbjct: 61 --YYLLNKPIGYSSTAKAQFQEKIVLDLIDSKERIYPVGRLDKDSFGLLLLTNDGDLAFR 118 Query: 126 ILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA--PFVFRITLVQ 183 + ++ EKEY+V VDK + E ++ +S+G+ + G +T+K + + + ++ L + Sbjct: 119 LTHPSHNVEKEYIVKVDKTLKESDLKKLSSGIMLEGKITRKARFEMLDFKSNIVKVFLKE 178 Query: 184 GLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 G NRQIR+M + Y V LER + L + +G +R+L+ +E+ L L Sbjct: 179 GRNRQIRKMFKTLDYNVISLERIAFGKIKLGKLKVGNYRELSKEEIEYLRSL 230 >UniRef50_C6JI84 Pseudouridine synthase n=2 Tax=Fusobacterium RepID=C6JI84_FUSVA Length = 236 Score = 271 bits (694), Expect = 2e-71, Method: Composition-based stats. Identities = 89/236 (37%), Positives = 140/236 (59%), Gaps = 6/236 (2%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREA 64 +R+NKY++ GI SRRE D+ IE+G++ +NG++AT G +V D + + G+ IE + Sbjct: 2 EEMRINKYLASLGIASRREVDKMIEEGSIKINGEKATPGIKVSDKDEIYIRGKKIE-KHT 60 Query: 65 EDLVLIALNKPVGIVSTT-EDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLV 123 E V LNKP+ ++S++ +D R +VD +N +R+FPIGRLD ++ GLI LTN G+L Sbjct: 61 EKKVYYILNKPLEVLSSSKDDRGRKTVVDLINCKERIFPIGRLDYNTSGLIILTNDGELF 120 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKE----APFVFRI 179 N+I+ + KEY V V I E + + GV + +T V+ + Sbjct: 121 NRIIHPKAEIFKEYYVKVLGEIKENNVELLKNGVELDDGITLPANVRILRREKGKTELLV 180 Query: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 + +G NRQ+RRM + + V L R +I N+SL + LGE+R+LT+DE+ L+ L Sbjct: 181 AIREGRNRQVRRMMDKINHPVITLRREKIGNLSLGNLKLGEYRELTNDEINYLYSL 236 >UniRef50_C8WXC0 Pseudouridine synthase n=3 Tax=Firmicutes RepID=C8WXC0_ALIAD Length = 273 Score = 271 bits (693), Expect = 2e-71, Method: Composition-based stats. Identities = 83/275 (30%), Positives = 134/275 (48%), Gaps = 14/275 (5%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEPREA 64 RL K ++ +G+ SRR+ + I G V ++G+ T +G +V P + V+G IE Sbjct: 2 ERLQKVLAHAGVASRRKCEELILAGRVSVDGEIVTQLGAKVDPSRQRIAVDGVPIEL--- 58 Query: 65 EDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTNHGDL 122 E V++ LNKPV +ST D R ++ + +RV+P+GRLD D+ GL+ TN G+L Sbjct: 59 EQPVVLVLNKPVAYLSTVSDPLGRRTVMQLLPPIRERVYPVGRLDYDTSGLLLFTNDGEL 118 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKE-------APF 175 ++L + EK Y V+V + E R + GV + VT KV+ Sbjct: 119 TQRLLHPSREIEKVYRVSVRGIVDRETRRALMEGVELEDGVTAPAKVEVLRQADREDGVA 178 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 V + + +G NRQ+RRM E G V +L+R VSL + GEWR LT +E + L++ Sbjct: 179 VVHLAIHEGRNRQVRRMFERLGLPVLRLKRIAFGPVSLGHLKTGEWRALTQEEWVALYQA 238 Query: 236 IENSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKG 270 + + ++ + + +G Sbjct: 239 AGMTPPPYRRPTISREPARKGAARASARDHGSRRG 273 >UniRef50_B3U4L2 Pseudouridine synthase n=3 Tax=Bacteria RepID=B3U4L2_9BACT Length = 420 Score = 271 bits (693), Expect = 2e-71, Method: Composition-based stats. Identities = 100/293 (34%), Positives = 147/293 (50%), Gaps = 11/293 (3%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEPREA 64 VRL K I+ +G+ SRR+A+ I G V +NG +G +V P D VKV+G+ + R A Sbjct: 3 VRLQKLIAGTGLASRRKAEELITSGRVTINGSVVKELGTKVDPARDHVKVDGKHL--RAA 60 Query: 65 EDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTNHGDL 122 + V + LNKP ++ST +D E R + D ++ + RVFP+GRLD DS+GL+ LTNHGDL Sbjct: 61 QPYVYLILNKPKNVMSTLDDPEGRPTVKDLLHGVTVRVFPVGRLDFDSEGLMLLTNHGDL 120 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKK----EAPFVFR 178 +L K YL+ V + + I + GV + T KVKK E+ Sbjct: 121 AQALLHPRYHVPKTYLIKVKGVLDDAKIEALERGVKLEDGFTAPAKVKKVSRAESNSWLE 180 Query: 179 ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIEN 238 +T+ +G Q++RM E G+ V KL R R+ + L + E+R LTD E L +L+E+ Sbjct: 181 VTIHEGRKHQVKRMVEAVGHSVIKLVRVRMGPLLLGDLAPREYRFLTDREANRLRELVED 240 Query: 239 SSSEV-KPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKGR 290 + +P+ A K P K R K S + R Sbjct: 241 RVARAERPELDASGKPTRWMPPTEPAPPRPPKPERSGRGPKSQRSERGPRSQR 293 >UniRef50_B8G2X0 Pseudouridine synthase n=3 Tax=Bacteria RepID=B8G2X0_CHLAD Length = 567 Score = 271 bits (693), Expect = 3e-71, Method: Composition-based stats. Identities = 98/298 (32%), Positives = 142/298 (47%), Gaps = 20/298 (6%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVK-PGDVVKVNGQLIEPR 62 S RL K ++ +GI SRR+ + I G V +NG+ T G +V D V V+GQ + R Sbjct: 2 SPERLQKVLASAGIASRRDCEELIAAGRVTVNGRVVTVPGTRVDLEHDEVLVDGQPL--R 59 Query: 63 EAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGD 121 I L+KP G+VST ED R +VD V+ RVFP+GRLD DS+GLI LT+ G+ Sbjct: 60 MPAKRTYIMLHKPAGVVSTAEDPHGRPTVVDLVDVPARVFPVGRLDLDSEGLILLTDDGE 119 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPF----VF 177 L + + EKEY V +D+ +T + +R GV + G +T V+ Sbjct: 120 LAYALTHPSFEVEKEYRVLLDRALTPDALRSWRNGVLLEGEMTAPAWVELLETTPEGVWV 179 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIE 237 RI L +G RQIR + + GYEV++L R R + L +P WR LTD+E+ L + Sbjct: 180 RIVLREGRKRQIRAVAKLLGYEVRRLVRVREGPLQLGDLPPRAWRHLTDEEVAALRAHVS 239 Query: 238 NSSSEVKPKAKA-----------KPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPG 284 S ++ KP AG PV + + + + Sbjct: 240 VRRSLADVPTRSTDVVKSRALDEKPHRAGDSAPVTRQRSEHSERRSSDRSRREQRDER 297 >UniRef50_B2V6W2 Pseudouridine synthase n=5 Tax=Bacteria RepID=B2V6W2_SULSY Length = 244 Score = 271 bits (693), Expect = 3e-71, Method: Composition-based stats. Identities = 75/244 (30%), Positives = 126/244 (51%), Gaps = 16/244 (6%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKP-GDVVKVNGQLIEPREA 64 +RL+K++S G SR + + I++G V +N + + P D V++ + I Sbjct: 1 MRLDKFLSNQGFGSRSQVQKLIKKGFVKVNDEIVKDPSYHIDPMKDKVELEDEEI---LY 57 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDF---VNHSKRVFPIGRLDKDSQGLIFLTNHGD 121 ++ LNKP G ++ TED E ++D + + ++FP+GRLD D++GL+ LT G Sbjct: 58 KENHYFMLNKPAGYITATEDEEYPTVLDLFSDLPIASKLFPVGRLDIDTEGLLILTTDGQ 117 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITE-EFIRGMSAGVPILGTV--TKKCKVKKE----AP 174 +++ + EKEY V+ I+ +F + G+ + TK KVK Sbjct: 118 FGHRLSHPKWNIEKEYYAIVEGDISNIDFSESENKGIYLKKEKYQTKPFKVKVLNTSKDK 177 Query: 175 FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDLF 233 ITL +G ++R+ + GY V L+R RI N+ L + GE+R+LT+ E+ DL Sbjct: 178 SEILITLTEGKYHIVKRIMQELGYPVLYLKRIRIGNLKLDEDLLPGEFRELTEKEIKDLK 237 Query: 234 KLIE 237 KLI+ Sbjct: 238 KLIK 241 >UniRef50_A5TWE7 Pseudouridine synthase n=10 Tax=Fusobacterium RepID=A5TWE7_FUSNP Length = 234 Score = 270 bits (692), Expect = 4e-71, Method: Composition-based stats. Identities = 83/234 (35%), Positives = 136/234 (58%), Gaps = 5/234 (2%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAED 66 +R+NK++S GI SRR D+YIE+G + +NG AT G + D + ++G+ I+ E+ Sbjct: 1 MRINKFLSTLGIASRRAIDKYIEEGRITVNGNTATTGMDINENDNIFIDGKKIKTSINEE 60 Query: 67 LVLIALNKPVGIVSTT-EDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNK 125 V LNKP+ ++S++ +D R +VD + KR+FPIGRLD + GLI LTN G+L N+ Sbjct: 61 KVYFMLNKPLEVLSSSSDDRGRKTVVDLIKTDKRIFPIGRLDYMTSGLILLTNDGELFNR 120 Query: 126 ILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKE----APFVFRITL 181 ++ ++ K+Y + + + +E I + GV + T K+ I++ Sbjct: 121 VVHPKSEIYKKYYIKILGELKKEEIDELKKGVLLDDGKTLPAKISGIKYDKNKTSMFISI 180 Query: 182 VQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 +G NRQIRRM E F Y+V L R +I ++L +P G++R+LT E+ L+ + Sbjct: 181 REGRNRQIRRMIEKFEYKVLMLRREKIGELALGDLPEGKYRELTKQEVEYLYSI 234 >UniRef50_Q0AX41 Pseudouridine synthase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AX41_SYNWW Length = 239 Score = 270 bits (691), Expect = 5e-71, Method: Composition-based stats. Identities = 85/242 (35%), Positives = 135/242 (55%), Gaps = 10/242 (4%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREAE 65 +RL KY++ESGI SRR+A+R I QG V +N K T + +KPGD V+ G++I E Sbjct: 1 MRLAKYLAESGISSRRQAERLITQGKVKVNDKTITELAFTLKPGDRVEFAGKII---EQT 57 Query: 66 DLVLIALNKPVGIVSTTEDG-ERDNIVDFV-NHSKRVFPIGRLDKDSQGLIFLTNHGDLV 123 D + + L+KP G +S+ D R ++D + + RVFP+GRLD D++GL+ L+N G+ Sbjct: 58 DKIYLLLHKPAGYISSLADPQGRPRVIDLLSAVNTRVFPVGRLDYDTEGLLLLSNDGEFS 117 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAP----FVFRI 179 N + K+Y V + + IR + GV + +T +V+ + + + Sbjct: 118 NLMTHPRYLIPKKYEAWVQGLVKPDTIRQLEQGVALEDGITAPARVRLLSSKKGQSLLEL 177 Query: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENS 239 + +G RQI+RMC G+ V KL+RT + ++L G+P G++R LT E+ L L S Sbjct: 178 EIHEGKKRQIKRMCLAVGHRVTKLKRTALAFLTLEGVPRGQFRFLTASEVESLIMLARQS 237 Query: 240 SS 241 Sbjct: 238 GK 239 >UniRef50_B0N6F1 Pseudouridine synthase n=3 Tax=Bacteria RepID=B0N6F1_9FIRM Length = 241 Score = 270 bits (690), Expect = 6e-71, Method: Composition-based stats. Identities = 88/239 (36%), Positives = 132/239 (55%), Gaps = 12/239 (5%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREAE 65 RL K I+ SG SRR+A+ I QG V +NGK T +G +VK GD++ V G+ + E Sbjct: 2 ERLQKAIAASGYTSRRKAEDLIVQGKVEVNGKVVTELGTKVKQGDLITVEGKPLV---GE 58 Query: 66 DLVLIALNKPVGIVSTTEDG-ERDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTNHGDLV 123 + V KP G V T +D +R I D+ +R++P+GRLD D+ GLI ++N G+ Sbjct: 59 NKVYYVFYKPKGCVCTLDDEFDRPIITDYFTEVKERIYPVGRLDFDTTGLIIMSNDGEFA 118 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAP------FVF 177 N I+ + EK Y V++ IT + + GV + G T CK+K + Sbjct: 119 NMIMHPRSHLEKIYEVSIKGLITGPTLNKLEKGVYLEGVKTLPCKIKVVDKDTEHKTTML 178 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLI 236 +I LV+G NRQ+++M E G+ VK+L R I ++L G+ G +R L E+ DL KL+ Sbjct: 179 KIKLVEGKNRQVKKMFESVGHPVKRLHRVSIGGINLKGLTPGRYRILKPQEVKDLKKLV 237 >UniRef50_C5EVC9 Pseudouridine synthase n=6 Tax=Clostridiales RepID=C5EVC9_9FIRM Length = 294 Score = 269 bits (688), Expect = 8e-71, Method: Composition-based stats. Identities = 120/258 (46%), Positives = 173/258 (67%), Gaps = 8/258 (3%) Query: 9 LNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEP-----RE 63 LNK++S+ G+CSRREADR IE G V+++G A +G +VKPG V +G + Sbjct: 36 LNKWLSQMGVCSRREADRLIEAGKVWVDGSPAAMGQKVKPGQKVVCDGVPVNGGSGADSR 95 Query: 64 AEDLVLIALNKPVGIVSTTEDGERD-NIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDL 122 VL+ +NKP GIV TT D +R NIV+++++ +R++P+GRLDKDS+GL+ +TN GDL Sbjct: 96 KPKPVLLVVNKPRGIVCTTSDKDRAMNIVEYLDYPERIYPVGRLDKDSEGLLLMTNQGDL 155 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPIL--GTVTKKCKVKKEAPFVFRIT 180 VNKI+R+GN HEKEY+VTVD+P+T++ + M+ G+ + TVT+ CKVK+ F I Sbjct: 156 VNKIMRSGNAHEKEYIVTVDRPLTDDAMDRMAKGIYLRELETVTRPCKVKRVDGKTFSII 215 Query: 181 LVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSS 240 L QGLNRQIRRMCE G V++L R RIMN+ L G+ G R++ +E +L +L+ +SS Sbjct: 216 LTQGLNRQIRRMCEACGCHVERLVRVRIMNIRLDGLETGASREVGQEEYRELMRLLRDSS 275 Query: 241 SEVKPKAKAKPKTAGIKR 258 S + +A P A + Sbjct: 276 SLPGGRGRAVPHKARTVK 293 >UniRef50_C0FY58 Pseudouridine synthase n=3 Tax=Clostridiales RepID=C0FY58_9FIRM Length = 261 Score = 268 bits (687), Expect = 1e-70, Method: Composition-based stats. Identities = 70/239 (29%), Positives = 123/239 (51%), Gaps = 12/239 (5%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKP-GDVVKVNGQLIEP 61 + +RL+K+++E G+ +R E + ++ + +NG+ T +V P D + G+ + Sbjct: 22 NELMRLDKFLTEMGLGTRSEVKKILKTKQITVNGEIVTKPETKVAPENDQISYKGEPVTY 81 Query: 62 REAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKR--VFPIGRLDKDSQGLIFLTNH 119 E E KP G V+ TED ++D++ + R +FP+GRLD D++GL+ +TN Sbjct: 82 CEYE---YYLFYKPAGCVTATEDQLHKTVMDYLTDTVRSDLFPVGRLDIDTEGLLLITND 138 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI-LGTVTKKCKVKK---EAPF 175 G L + +L EK Y +D +TE+ + GV I +TK K++ E Sbjct: 139 GALAHDLLSPAKHVEKTYYAVIDGVVTEKDVNSFENGVDIGEEKLTKPGKLRILKSEPES 198 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDELIDLF 233 +T+ +G Q++RM E G +V L+R + + L + GE+R LT++E+ L Sbjct: 199 EIELTITEGRFHQVKRMFEAVGKKVLYLKRISMGPLQLTDDLKPGEYRPLTEEEITALK 257 >UniRef50_D1Y0J0 Pseudouridine synthase n=1 Tax=Prevotella bivia JCVIHMP010 RepID=D1Y0J0_9BACT Length = 555 Score = 268 bits (687), Expect = 1e-70, Method: Composition-based stats. Identities = 80/238 (33%), Positives = 131/238 (55%), Gaps = 10/238 (4%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEP 61 P +RLNK+++ +G+CSRREAD +I G V +NG+ +G ++ D VK +L+ Sbjct: 316 PTEPLRLNKFLANAGVCSRREADDFILAGQVTVNGEVINELGTKILRTDEVKFQDKLVSL 375 Query: 62 REAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH--SKRVFPIGRLDKDSQGLIFLTN 118 E V + LNKP V+T++D + R ++D V +R++P+GRLD+++ G++ TN Sbjct: 376 ---EKKVYVLLNKPKDYVTTSDDPQQRKTVMDLVKDACPERIYPVGRLDRNTTGVLLFTN 432 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAP---F 175 GDL +K+ +K Y V +DKPIT ++ +S G+ + K ++ P Sbjct: 433 DGDLASKLTHPKFLKKKVYHVFLDKPITANELQKISDGIELEDGEIKADAIEYANPEDQA 492 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF 233 I + G NR +RR+ E GY V KL+R ++ + G+WR LT+ E+ L Sbjct: 493 QVGIEIHSGKNRIVRRIFESLGYRVVKLDRVMFAGLTKKNVRRGDWRFLTEKEVEMLR 550 >UniRef50_B9KC52 Pseudouridine synthase n=1 Tax=Thermotoga neapolitana DSM 4359 RepID=B9KC52_THENN Length = 240 Score = 268 bits (686), Expect = 2e-70, Method: Composition-based stats. Identities = 76/231 (32%), Positives = 132/231 (57%), Gaps = 6/231 (2%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEPREAE 65 +RL++Y+S GI +R+E I+ G V +N + ++ DVVKV+G++I+ E Sbjct: 1 MRLDRYLSNRGIGTRKEVRALIKHGRVTVNDRTVLDPAYKLSDKDVVKVDGKVIDLPE-- 58 Query: 66 DLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNK 125 V I KP G V++T D + I++F+ K +FP+GRLDKD++GL+ +TN G+ ++ Sbjct: 59 -KVYILFYKPAGYVTSTRDPHSETIMEFLPDIKGIFPVGRLDKDAEGLLLVTNDGEFAHR 117 Query: 126 ILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCK-VKKEAPFVFRITLVQG 184 ++ EKEY+V V+ ITE+ + + GV + K K V+K + +I + +G Sbjct: 118 VISPRWKVEKEYVVKVEGEITEDKLEKLRRGVSLRDGFFAKAKHVEKISNDTVKIVITEG 177 Query: 185 LNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDLFK 234 Q++RM G + L+R RI + L + GE+R L+++E+ +F+ Sbjct: 178 KYHQVKRMMAAVGLKTIHLKRVRIGGLRLPQEMKPGEYRFLSEEEVRQVFE 228 >UniRef50_A6LIA0 Pseudouridine synthase n=23 Tax=Bacteroidales RepID=A6LIA0_PARD8 Length = 495 Score = 268 bits (686), Expect = 2e-70, Method: Composition-based stats. Identities = 78/238 (32%), Positives = 132/238 (55%), Gaps = 10/238 (4%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEP 61 P+ +RLNK++S +G+CSRREAD +I++G V +N T +G ++ DVV N + ++ Sbjct: 256 PNEPIRLNKFLSNAGVCSRREADEFIQKGAVKVNDVVVTELGTKITRQDVVTFNEKPVQI 315 Query: 62 REAEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHS--KRVFPIGRLDKDSQGLIFLTN 118 E V I LNKP V+T++D ER ++D V ++ +R++P+GRLD+++ G++ LTN Sbjct: 316 ---ESKVYIVLNKPKNCVTTSDDPQERLTVMDLVKNACQERIYPVGRLDRNTTGVLLLTN 372 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVT---KKCKVKKEAPF 175 GDL +K+ +K Y V +DK + E + ++ G+ + ++ Sbjct: 373 DGDLASKLTHPSFKKKKIYHVWLDKNVAIEDMEKIANGLELEDGEIHADAISYASEDDKS 432 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF 233 I + G NR +RR+ E GY V KL+R ++ + G+WR L + E+ L Sbjct: 433 QVGIEIHSGRNRIVRRIFESLGYHVTKLDRVYFAGLTKKNLGRGKWRYLNEREVNALR 490 >UniRef50_A8ZRV1 Pseudouridine synthase n=3 Tax=Desulfobacteraceae RepID=A8ZRV1_DESOH Length = 241 Score = 268 bits (685), Expect = 2e-70, Method: Composition-based stats. Identities = 93/233 (39%), Positives = 134/233 (57%), Gaps = 4/233 (1%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEPR 62 +RL K++S +G+CSRR A+ YI +G V +NG+ T +G +V P D V +G + Sbjct: 8 GQIRLQKFLSGAGVCSRRRAEVYIAEGRVAVNGQVVTELGTKVDPESDDVMFDGHRVTL- 66 Query: 63 EAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDL 122 AE V IALNKP G V++ + +++ V +RVFP+GRLDK S GL+ +T+ G L Sbjct: 67 -AESHVYIALNKPPGYVTSCLQKQETTVMELVAVDQRVFPVGRLDKPSCGLLLMTSDGGL 125 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLV 182 ++ DHEKEY V D+P+++ + M G+ I G T+ KVK+ + F I L Sbjct: 126 HQRLSHPSFDHEKEYDVACDRPVSDADLDAMRRGMVITGRKTRPAKVKRLSDRRFLIILQ 185 Query: 183 QGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 +G NRQIRRM E G V L R RI ++ L + G WR LT++E L Sbjct: 186 EGRNRQIRRMAEMLGNRVVLLRRIRIAHIHLGDLAEGRWRYLTEEEKKALLHQ 238 >UniRef50_O67444 Uncharacterized RNA pseudouridine synthase aq_1464 n=4 Tax=Bacteria RepID=Y1464_AQUAE Length = 249 Score = 267 bits (684), Expect = 2e-70, Method: Composition-based stats. Identities = 79/255 (30%), Positives = 136/255 (53%), Gaps = 15/255 (5%) Query: 1 MLPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQL 58 M+ VR+NK++SE+G+ SRR+A++ I +G V +NG+ +G +V P D+V+V+G+ Sbjct: 1 MME---VRINKFLSEAGVASRRKAEKLILEGRVKVNGEVVRSLGVKVNPEVDIVEVDGKP 57 Query: 59 IEPREAEDLVLIALNKPVGIVST--TEDGERDNIVDFVNH-SKRVFPIGRLDKDSQGLIF 115 ++P + I LNKP ++ R I + + +RVFP+GRLD +++GL+ Sbjct: 58 VKP---QRKRYIILNKPCCYLTQLGRSPDGRKTIEELIKDIPERVFPVGRLDYNTEGLLI 114 Query: 116 LTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKK---- 171 LTN G+L N+IL K YL V+ + ++ ++ M G+ + K ++ Sbjct: 115 LTNDGELANRILHPRYKLPKVYLALVEGKVDQKTLKRMKQGIELEDGFAKPDNIRIVRYE 174 Query: 172 EAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELID 231 + IT +G ++R FG++VK+L+R I + L + G+WR+L EL Sbjct: 175 GKNTLLEITFHEGRKHLVKRFLGAFGHKVKRLKRIAIGPIKLGKLSPGKWRELNQGELAQ 234 Query: 232 LFKLIENSSSEVKPK 246 LFK + K + Sbjct: 235 LFKAVGLKYVPRKRR 249 >UniRef50_Q65HX7 Pseudouridine synthase n=5 Tax=Firmicutes RepID=Q65HX7_BACLD Length = 244 Score = 267 bits (684), Expect = 3e-70, Method: Composition-based stats. Identities = 87/245 (35%), Positives = 136/245 (55%), Gaps = 12/245 (4%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEPREAE 65 RL K I+ +GI SRR+A+ I++G V +NGK +G +V D ++VNG + E+E Sbjct: 2 ERLQKVIAHAGIASRRKAEELIKEGRVTVNGKTVRELGVKVSSSDRIEVNGVQL---ESE 58 Query: 66 DLVLIALNKPVGIVST-TEDGERDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTNHGDLV 123 + V L KP G++S +D R + DF +R++PIGRLD D+ GL+ LTN GD Sbjct: 59 EPVYFLLYKPRGVISAVKDDKGRKVVTDFFTEVEERIYPIGRLDYDTSGLLLLTNDGDFA 118 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA------PFVF 177 NK++ + K Y+ + +E ++ + GV + T KVK + + Sbjct: 119 NKLMHPKYEINKTYVAKLKGIPLKENLKKLERGVRLEDGKTAPAKVKLLSLDKKKQTSIV 178 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIE 237 +IT+ +G NRQ+RRM E G+EV KL+R ++L+G+ GE R+LT E+ L L E Sbjct: 179 QITIHEGRNRQVRRMFEAIGHEVLKLKREEYAFLNLAGLKTGEKRELTPHEVKRLRALAE 238 Query: 238 NSSSE 242 + + Sbjct: 239 HGKAA 243 >UniRef50_C3JBA6 Pseudouridine synthase n=2 Tax=Bacteria RepID=C3JBA6_9PORP Length = 459 Score = 267 bits (684), Expect = 3e-70, Method: Composition-based stats. Identities = 82/239 (34%), Positives = 139/239 (58%), Gaps = 10/239 (4%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEP 61 P + +RLNK+++ SG+CSRR AD+ I G+V +NG+ T +G V D + V+G+ + Sbjct: 220 PKTPLRLNKFLASSGVCSRRVADQLIVDGHVSVNGEIVTQLGKHVTREDFISVDGKPVSI 279 Query: 62 REAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH--SKRVFPIGRLDKDSQGLIFLTN 118 E + + LNKP V+T+ D E R +D V + ++R++P+GRLD+++ GL+ LTN Sbjct: 280 ---EKKIYVLLNKPRNCVTTSSDPEKRLTAIDLVRNACNERIYPVGRLDRNTTGLLLLTN 336 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPF--- 175 GDL K++ + +K Y VT+DKP++ E ++ +++G+ + + Sbjct: 337 DGDLAAKLMHPKYEKKKIYQVTLDKPVSVEHMQQIASGIELEDGEIHADAISYVDENNLA 396 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFK 234 + I + G NR +RR+ +H GY V KL+R ++ +P G WR LT+DE+ +L Sbjct: 397 IVGIEIHSGRNRIVRRIFKHLGYRVYKLDRVYFAGLTKKDLPRGRWRYLTEDEVRNLRH 455 >UniRef50_B2RK43 Pseudouridine synthase n=1 Tax=Porphyromonas gingivalis ATCC 33277 RepID=B2RK43_PORG3 Length = 439 Score = 267 bits (683), Expect = 4e-70, Method: Composition-based stats. Identities = 80/238 (33%), Positives = 137/238 (57%), Gaps = 10/238 (4%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEP 61 P+ +RLNK++S +G+CSRREAD IE+G + +NG+ T +G ++ D V + +E Sbjct: 200 PNEPIRLNKFLSNAGVCSRREADLLIEKGEITVNGEVVTELGRRITRQDEVIYKDKRVEI 259 Query: 62 REAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH--SKRVFPIGRLDKDSQGLIFLTN 118 E V + LNKP V+T++D E R ++D V + +R++P+GRLD+++ G++ +TN Sbjct: 260 ---ESKVYVLLNKPKNCVTTSDDPECRTTVMDIVRYACPERIYPVGRLDRNTTGVLLITN 316 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVT---KKCKVKKEAPF 175 GDL +K+ +K Y V ++K ++ E ++ ++ GV + VK++ Sbjct: 317 DGDLASKLTHPSFKKKKIYHVWLNKDVSIEDMQKIADGVELDDGEIHADAISYVKEDDLS 376 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF 233 I + G NR +RR+ EH GY V KL+R ++ +P G+WR L + E+ +L Sbjct: 377 QVGIEIHSGRNRIVRRLFEHLGYRVVKLDRVYFAGLTKKNLPRGKWRYLNEQEVNNLR 434 >UniRef50_B5YJH7 Pseudouridine synthase n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YJH7_THEYD Length = 237 Score = 266 bits (682), Expect = 4e-70, Method: Composition-based stats. Identities = 88/235 (37%), Positives = 130/235 (55%), Gaps = 9/235 (3%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPG-DVVKVNGQLIEPREAE 65 RL K +S+ GI SRR A+ I++G V +NG+ A IG + P D +KV+G+L+ + E Sbjct: 3 ERLQKILSDYGIASRRHAEELIKEGRVTVNGQIAVIGQKADPEKDYIKVDGKLL--IKPE 60 Query: 66 DLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHSK-RVFPIGRLDKDSQGLIFLTNHGDLV 123 V A KP +++ D R I DF+ K R++P+GRLD DS+GL+ LTN G+L Sbjct: 61 PKVYYAFYKPRKVITALLDPQGRPTIRDFIKGIKFRIYPVGRLDFDSEGLLLLTNDGELA 120 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKV----KKEAPFVFRI 179 K++ + EK Y+V VD + E I + G+ I G + V K +A +I Sbjct: 121 YKVMHPSSQIEKTYMVKVDGIVEPETIEKLRKGIKIEGKLAVPVSVHLVKKLKANSWIKI 180 Query: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFK 234 TL +G RQIR+M E G+ V +L R I V L + G+ R LT +E+ L + Sbjct: 181 TLHEGRKRQIRKMLERVGHPVIRLIRIAIDGVKLGDLKPGQLRPLTKEEIEKLRR 235 >UniRef50_C2D7I2 Pseudouridine synthase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D7I2_9ACTN Length = 285 Score = 266 bits (681), Expect = 6e-70, Method: Composition-based stats. Identities = 71/264 (26%), Positives = 132/264 (50%), Gaps = 31/264 (11%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEPRE 63 ++RL ++++ +G+ SRR +++ I G V +NGK+ +G +V P D V V+G+ E Sbjct: 24 TMRLQRFLARAGVASRRGSEKLISAGRVCVNGKQVRVLGTKVMPQYDHVTVDGK--EYVL 81 Query: 64 AEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVN--HSKRVFPIGRLDKDSQGLIFLTNHG 120 D V + LNKP +++T D + V +FP+GRLD D+ G++ T +G Sbjct: 82 GNDHVYLLLNKPSQVLTTMSDPFGFPCVASLVPCDDYPGLFPVGRLDSDTTGVLLFTTNG 141 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKE-------- 172 ++ N++L + K Y+ ++ +T ++ +S G+ + +T C ++ Sbjct: 142 NMGNRLLHPSHHVWKTYVALIEGKLTSSQMQKLSQGIMLEDGMTSPCFIRTITQDEPCTH 201 Query: 173 ---------------APFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGI 216 A + + + +G N Q++RM + G+ V KL R + + L + I Sbjct: 202 LDKNHSLFDDMRLNAASSLCELKIHEGRNHQVKRMLQEIGHPVIKLHRFQFGPLCLNAQI 261 Query: 217 PLGEWRDLTDDELIDLFKLIENSS 240 PLG WR T E+ DL + E+++ Sbjct: 262 PLGSWRMCTQQEIHDLETVCEDNT 285 >UniRef50_C9KIR7 Pseudouridine synthase n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KIR7_9FIRM Length = 250 Score = 266 bits (680), Expect = 7e-70, Method: Composition-based stats. Identities = 84/251 (33%), Positives = 137/251 (54%), Gaps = 18/251 (7%) Query: 1 MLPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDV-VKVNGQL 58 M+ + RL K IS++GI SRR A++ I +G V ++G+ +G +V P + V+G+ Sbjct: 1 MMQEE--RLQKIISQAGIASRRAAEKMILEGRVRVDGQVVRELGTKVDPAAHTILVDGKK 58 Query: 59 IEPREAEDLVLIALNKPVGIVSTT-EDGERDNIVDFVNH-SKRVFPIGRLDKDSQGLIFL 116 I E V + LNKP G +ST +D R ++D + +RV+P+GRLD +++GL+ + Sbjct: 59 IAGE--EQHVYLLLNKPKGYLSTAKDDRGRRTVLDLLPEVRERVYPVGRLDNNTEGLLLI 116 Query: 117 TNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAP-- 174 TN G L+N +L + EK Y V +TEE ++ + G+ + +T KV Sbjct: 117 TNDGALMNGLLHPRFEVEKTYHAGVTGKLTEEKLQMLRDGLLLEDGMTAPAKVSLLPERE 176 Query: 175 --------FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTD 226 IT+ +G NRQ+RRM G +VK L+R R ++L G+ G+ R LT+ Sbjct: 177 PGERVRGLTRAAITIHEGRNRQVRRMFAAVGCDVKSLKRVRFAGLTLKGVARGQHRALTE 236 Query: 227 DELIDLFKLIE 237 +E+ L++L Sbjct: 237 EEVSSLYRLAG 247 >UniRef50_C7H5G4 Pseudouridine synthase n=8 Tax=Clostridiales RepID=C7H5G4_9FIRM Length = 294 Score = 266 bits (680), Expect = 8e-70, Method: Composition-based stats. Identities = 91/282 (32%), Positives = 141/282 (50%), Gaps = 14/282 (4%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPG-DVVKVNGQLIEPRE 63 + R+ K ++E G+CSRR A++ I +G V +NG +GD++ P DV+ V+ + I ++ Sbjct: 19 AEERIQKIMAEQGLCSRRAAEQIIAEGRVKVNGHPVKVGDKMDPNRDVLHVDDERIYIQK 78 Query: 64 AEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHSK-RVFPIGRLDKDSQGLIFLTNHGD 121 + L +AL KP G V+T D R +++ V+ R++P+GRLDKDS+GL+ +TN G Sbjct: 79 NQQLYYLALYKPRGYVTTASDELGRKTVMELVSDIPARLYPVGRLDKDSEGLLLMTNDGA 138 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGT-VTKKCKVKKE----APFV 176 + K Y VTV E I MS+GV + T C + V Sbjct: 139 FAQAVTHPSGGISKLYRVTVQPRADESQILKMSSGVVLDDGTKTMPCAINVVTDEPGRTV 198 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLI 236 +TL +G NR+IRRMCE G EV +L+R V L + G +R+LT E+ L Sbjct: 199 MEMTLKEGKNREIRRMCEAVGLEVVRLKRNAEGVVKLGMLKPGTYRELTKAEVSGLR--- 255 Query: 237 ENSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGK 278 ++ K +A+ + K + + G PA K Sbjct: 256 ---AAAAKGRAQTRSAALQSKAAARRPKGPVGSGNAPAKRRK 294 >UniRef50_C1XV14 Pseudouridine synthase n=2 Tax=Meiothermus RepID=C1XV14_9DEIN Length = 369 Score = 265 bits (679), Expect = 9e-70, Method: Composition-based stats. Identities = 88/281 (31%), Positives = 139/281 (49%), Gaps = 6/281 (2%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAED 66 +RL ++++ +G+ SRR+A+ I +G V +N + A IG V DVV ++G+ + R E Sbjct: 1 MRLQQFLARAGVASRRKAEDLIREGRVTINDQIAGIGSSVSESDVVCLDGERV--RLPEK 58 Query: 67 LVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNK 125 V+IAL+KPVG+ +T D + V + P+GRLDKDS+GL+ LTN GDL K Sbjct: 59 KVVIALHKPVGVTTTKSDPHAERTVYQLVPDVPGLHPVGRLDKDSEGLLLLTNDGDLTLK 118 Query: 126 ILRAGNDHEKEYLVTV-DKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQG 184 + K Y ++E R + GV + + + + + RI + +G Sbjct: 119 LTHPRYGVRKVYRAWCKHGRVSEADCRRLVEGVALDDGLAQALEAEPTQEG-ARIVMAEG 177 Query: 185 LNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSSSEVK 244 R++RRM GY V +L R ++ + L + GEWR LT +E+ L + + Sbjct: 178 KKREVRRMLGRLGYPVTRLVRLQVGPIKLGKLNPGEWRYLTPEEIGLLQGQKPLKPRKKE 237 Query: 245 PKAKAKPKTAGIKRPVVKMEKTAEKGGR-PASNGKRFTSPG 284 AKAKP +R + K + + A R SPG Sbjct: 238 GWAKAKPAKFAQQREESRAIKPPSRTEQGRAGFTVRTKSPG 278 >UniRef50_B1XJP9 Pseudouridine synthase n=3 Tax=Chroococcales RepID=B1XJP9_SYNP2 Length = 259 Score = 265 bits (679), Expect = 1e-69, Method: Composition-based stats. Identities = 77/240 (32%), Positives = 113/240 (47%), Gaps = 10/240 (4%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKP-GDVVKVNGQLIEPREA 64 + R+ K ++ GI SRR A++ I G V LNGK +GDQ P GD + V+G+ ++ E Sbjct: 2 AERVQKILARWGIASRRGAEKLILAGRVTLNGKPVQLGDQADPEGDRLCVDGKPLKATER 61 Query: 65 EDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHSKR----VFPIGRLDKDSQGLIFLTNH 119 ++KP G+VST D R ++D + R + PIGRLD S G + LTN Sbjct: 62 PRHYYYLIHKPKGVVSTCADPKGRSTVLDLLPPPLRQGKGIHPIGRLDAQSTGALLLTND 121 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKK----EAPF 175 G+ + K Y V + + E + GV + T ++ + Sbjct: 122 GNFTLALTHPRYHIPKTYRVWLKGKVPEHVLDQWRQGVMLGDRRTLPTQIHLKTITQDKT 181 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 I L +G NRQIRR+ E G+ V KL R I N+ L + G+ R LT E+ L Sbjct: 182 CIDIMLTEGRNRQIRRVAEQLGFPVVKLHRLAIGNLHLGDLQRGQARPLTKAEIKQLRSQ 241 >UniRef50_A3ESK0 Pseudouridine synthase n=4 Tax=Bacteria RepID=A3ESK0_9BACT Length = 616 Score = 265 bits (677), Expect = 2e-69, Method: Composition-based stats. Identities = 87/290 (30%), Positives = 137/290 (47%), Gaps = 10/290 (3%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIE 60 D +RL K ++ G+ SRR A+ I G V +NG T G +V P D V V+G+ + Sbjct: 14 EDGLIRLQKLLAHRGLASRRNAEEMIRGGLVKVNGIVVTVPGTKVHPETDRVTVDGKTVP 73 Query: 61 PREAEDLVLIALNKPVGIVSTTEDGERDN-IVDFVNHSKRVFPIGRLDKDSQGLIFLTNH 119 + L KP GIVST D + + DF + +GRLD S+G++ LTN+ Sbjct: 74 VE--PEPFLFLFYKPKGIVSTLHDPDEKTTLKDFFPQINPLIHVGRLDIQSEGVLLLTNN 131 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAG-VPILGTVTKKCKVKKE----AP 174 GDL +IL + + YLV V + E + + +G V + G + ++++E Sbjct: 132 GDLAQRILHPRYEIPRTYLVKVQGVVKPEHLDRLRSGKVRLDGRPVQPLELEQERLTETN 191 Query: 175 FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFK 234 +RITL +G NR++RR+ + Y V KL R N+ L+G+ GE+R +T +E+ L Sbjct: 192 SWYRITLTEGRNREVRRLFDALHYFVLKLTRIAFGNLDLAGLEPGEYRLVTPEEIALLLS 251 Query: 235 LIENSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPG 284 E P + P+ P + R S + F+ P Sbjct: 252 GARWKRKESIPPPERSPRKPNPATPSSPDFRRHSFRSRTTSPDRTFSGPA 301 >UniRef50_D1C7P2 Pseudouridine synthase n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C7P2_SPHTD Length = 337 Score = 265 bits (677), Expect = 2e-69, Method: Composition-based stats. Identities = 96/285 (33%), Positives = 147/285 (51%), Gaps = 12/285 (4%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPG-DVVKVNGQLIEPREA 64 RL + ++ G+ SRR+A+ I G V ++G+ +G +V P ++V+G+ + P Sbjct: 2 ERLQRVLAAHGVASRRKAEELITAGRVTVDGQVVRELGVRVDPERQEIRVDGKRLRP--- 58 Query: 65 EDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLV 123 E I LNKP G ++T D R ++D V +RV P GRLD+ + GL+ LTN GDL+ Sbjct: 59 ERRRYIMLNKPPGYITTVSDERGRRTVMDLVQVPERVVPAGRLDRPTAGLLLLTNDGDLL 118 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK----KEAPFVFRI 179 +I + EKEY V VD E + + GV + G +V+ +EA V RI Sbjct: 119 FRITHPRYELEKEYEVLVDGHPPPEVLDQLRRGVTVDGERVVPDQVRPLRIEEAGTVLRI 178 Query: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENS 239 + +G NR +RRM + GY V KL RTRI + + G+PLG WRDLT E++ L + + Sbjct: 179 VIHEGRNRIVRRMMDRVGYPVLKLTRTRIGPIHVRGVPLGAWRDLTPGEVMQLLEAVGLD 238 Query: 240 SSEVKPKAKA--KPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTS 282 + + G +R + +G RPA +G R + Sbjct: 239 PASAGRPLPEPGRRSDPGERRGEPRRSGPTRRGERPAPSGARPPA 283 >UniRef50_A8SYF2 Pseudouridine synthase n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8SYF2_9FIRM Length = 239 Score = 265 bits (677), Expect = 2e-69, Method: Composition-based stats. Identities = 70/242 (28%), Positives = 120/242 (49%), Gaps = 15/242 (6%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGK-RATIGDQVKPG-DVVKVNGQLIEPREA 64 +RL+K++ E I SR + +YI++G V +NG A+ ++ D +K NG+ + + Sbjct: 1 MRLDKFLVEMNIGSRSQVKQYIKKGMVSVNGTNAASSDMKINEDTDTIKYNGKQLCYSKY 60 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNHS--KRVFPIGRLDKDSQGLIFLTNHGDL 122 LNKP G VS T+D ++D +N K +FP+GRLD D++GL+ +TN G L Sbjct: 61 ---RYFLLNKPAGCVSATKDNVHQTVIDLLNGENTKDLFPVGRLDLDTEGLLIITNDGRL 117 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI-LGTVTKKCKVKKE------APF 175 + +L + K Y +D + ++ I G+ I T T +K Sbjct: 118 AHHLLSPAHHIAKTYYADIDGYVDDQTISLFKQGIDIGDDTPTLPASLKIIEADRSTGSS 177 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDELIDLFK 234 +T+ +G Q++RM + V L+R + N+ + +P G +R+LT +E+ L Sbjct: 178 RIELTITEGRFHQVKRMFQAVNMSVTFLKRISMGNLHIADDLPTGSYRELTPEEVSALSH 237 Query: 235 LI 236 I Sbjct: 238 TI 239 >UniRef50_P35159 Ribosomal large subunit pseudouridine synthase B n=200 Tax=Bacteria RepID=RLUB_BACSU Length = 244 Score = 264 bits (676), Expect = 2e-69, Method: Composition-based stats. Identities = 83/245 (33%), Positives = 136/245 (55%), Gaps = 12/245 (4%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREAE 65 RL K I+ +G+ SRR+A+ I++G V +NGK T +G +V D ++VNG + E E Sbjct: 2 ERLQKVIAHAGVASRRKAEELIKEGKVKVNGKVVTELGVKVTGSDQIEVNGLKV---ERE 58 Query: 66 DLVLIALNKPVGIVST-TEDGERDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTNHGDLV 123 + V L KP G++S +D R + DF + +R++PIGRLD D+ GL+ LTN G+ Sbjct: 59 EPVYFLLYKPRGVISAAQDDKGRKVVTDFFKNIPQRIYPIGRLDYDTSGLLLLTNDGEFA 118 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA------PFVF 177 NK++ + +K Y+ V +E +R + G+ + T K K + + Sbjct: 119 NKLMHPKYEIDKTYVAKVKGIPPKELLRKLERGIRLEEGKTAPAKAKLLSLDKKKQTSII 178 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIE 237 ++T+ +G NRQ+RRM E G+EV KL+R ++L G+ G+ R+LT E+ L L + Sbjct: 179 QLTIHEGRNRQVRRMFEAIGHEVIKLKREEYAFLNLRGLHTGDARELTPHEVKRLRALAD 238 Query: 238 NSSSE 242 + + Sbjct: 239 HGKNA 243 >UniRef50_A5ZYR1 Pseudouridine synthase n=2 Tax=Clostridiales RepID=A5ZYR1_9FIRM Length = 315 Score = 264 bits (676), Expect = 2e-69, Method: Composition-based stats. Identities = 128/295 (43%), Positives = 182/295 (61%), Gaps = 8/295 (2%) Query: 2 LPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEP 61 +++R+NKY+S +G+CSRREAD+ + G V + GK G+++ V ++G+ ++ Sbjct: 8 TDQTTIRINKYLSAAGVCSRREADQLTDAGRVTVAGKEIGTGERIPADAEVFLDGRPVKA 67 Query: 62 REAEDLVLIALNKPVGIVSTTE-DGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHG 120 + VL+ KP GIV +T+ + + +F+++ RV+P+GRLDKDS+GL+ LTN G Sbjct: 68 ETRQ--VLLLFYKPRGIVCSTKKQRQETTVTEFLDYPVRVYPVGRLDKDSEGLLLLTNQG 125 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRIT 180 DLVN+I+RAGN HEKEY VTVDK ITE FIR MS+GVPILGTVT+ C V K F I Sbjct: 126 DLVNRIMRAGNYHEKEYEVTVDKKITETFIRKMSSGVPILGTVTRPCTVYKTGDKSFSII 185 Query: 181 LVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSS 240 L QGLNRQIRRMCE+ GY V L+R RIMN++L G+ GE+R++ DE L +LI +SS Sbjct: 186 LTQGLNRQIRRMCEYLGYHVCTLKRIRIMNLTLDGLKCGEYREICGDEWKKLNELIRDSS 245 Query: 241 SEVKPK-----AKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKGR 290 SE + K +T + GRP + ++ + G+ Sbjct: 246 SETVIRTGGQHGKISGRTNKRTGAEAERSGKGILSGRPGDHEQQRVRRTVRSTGK 300 >UniRef50_A2RP35 Pseudouridine synthase n=172 Tax=Firmicutes RepID=A2RP35_LACLM Length = 328 Score = 264 bits (676), Expect = 2e-69, Method: Composition-based stats. Identities = 75/251 (29%), Positives = 130/251 (51%), Gaps = 20/251 (7%) Query: 1 MLPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIG-DQVKPGDV-VKVNGQL 58 + + +RL+K+++ESG+ SR E +++G V + G+ G QV V +GQ+ Sbjct: 81 LCYNKGMRLDKFLAESGLGSRSEVKVLLKKGRVTVAGEIQRDGRFQVDKNSRQVAFDGQI 140 Query: 59 IEPREAEDLVLIALNKPVGIVSTTEDGERDNIVDFV---NHSKRVFPIGRLDKDSQGLIF 115 ++ +E LNKP G+VS T+D +V + + K +FP+GRLDK+++GL+ Sbjct: 141 LDYQEY---YYYLLNKPQGVVSATKDNVFKTVVQLLSEKDFRKDIFPVGRLDKNTEGLLI 197 Query: 116 LTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI-LGTVTKKCKVKKEAP 174 LTN G L + + + EKEY +D +T+E I + G+ + G + ++ E Sbjct: 198 LTNDGALGHDLTQPKKHVEKEYFARIDGKVTDEIINKFAEGLTLKNGEKARPGELFVEKT 257 Query: 175 ----------FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRD 223 R+ + +G Q++RM E V L+R R+ N++L + LG +R Sbjct: 258 YKGDSQSGWVSEIRVIIHEGKFHQVKRMFEAVEMYVLYLKRIRMGNLALDSDLALGAYRP 317 Query: 224 LTDDELIDLFK 234 LT +E+ +L K Sbjct: 318 LTIEEIENLKK 328 >UniRef50_C8NZC3 Pseudouridine synthase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZC3_ERYRH Length = 246 Score = 264 bits (675), Expect = 3e-69, Method: Composition-based stats. Identities = 88/235 (37%), Positives = 130/235 (55%), Gaps = 10/235 (4%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNG-KRATIGDQVKPGDVVKVNGQLIEPREAE 65 +RL K+I+ SG CSRR+A+ I +G V +NG K G +V D V VNG LI E Sbjct: 7 IRLQKFIAMSGYCSRRKAEVLINEGKVKVNGIKVTEQGLKVSTEDRVMVNGILINVE--E 64 Query: 66 DLVLIALNKPVGIVST-TEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVN 124 V LNKP GIVS+ +D +R+++VD V + RVFP+GRLD+++ G + LTN GD Sbjct: 65 KKVYYILNKPRGIVSSANDDKDRESVVDLVPNDIRVFPVGRLDRETTGALILTNDGDFAY 124 Query: 125 KILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKK------EAPFVFR 178 + D K Y V+V ++ E + G+ I G K ++ + + F Sbjct: 125 YMTHPKFDLSKIYRVSVRGRLSYEVTNSLKEGITIEGVEYKGVEISRVKYDAAKDKTQFS 184 Query: 179 ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF 233 ITL +G NRQIR++ HFG V KL R +I + + + +G++R+L E+ L Sbjct: 185 ITLHEGKNRQIRKIFAHFGLPVLKLHRYQIGYLDIDELKIGQYRELKPFEVKKLL 239 >UniRef50_UPI0001BCEF2E pseudouridine synthase n=1 Tax=Selenomonas noxia ATCC 43541 RepID=UPI0001BCEF2E Length = 296 Score = 264 bits (675), Expect = 3e-69, Method: Composition-based stats. Identities = 83/297 (27%), Positives = 141/297 (47%), Gaps = 17/297 (5%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKP-GDVVKVNGQLIEPRE 63 RL K +S +G+ SRR A+ I G V ++G T +G + P + V+ + I Sbjct: 2 EERLQKILSNAGVASRRAAEDLIRAGRVAVDGVAVTELGRKFDPANHTITVDSKPIHSD- 60 Query: 64 AEDLVLIALNKPVGIVST-TEDGERDNIVDFVNHSK-RVFPIGRLDKDSQGLIFLTNHGD 121 E I LNKP G +ST +D R ++D + R++P+GRLD D++G++ +TN G Sbjct: 61 -EKRFYILLNKPRGYLSTARDDRGRKTVLDLLPDFPARLYPVGRLDADTEGVLLITNDGA 119 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKE----APFVF 177 + +L + +K Y V P+TE + + G+ + +T K++ V Sbjct: 120 ITQGLLHPRFEIDKVYHAEVAGPVTEGGLTRLRRGILLEDGMTASAKLRILRADKGYTVV 179 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIE 237 + +G NRQ+RRM G V L R R ++L G+ G +R LT DE+ +L + Sbjct: 180 ETIIHEGRNRQVRRMFAAIGCRVCALRRVRFAMLTLRGLSCGSFRHLTRDEIHELRIIAG 239 Query: 238 NSSSEVKPKAKAKP-------KTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKK 287 SSE + +P ++ G++R + A + +GKR +++ Sbjct: 240 VMSSEEDCRRGCRPSGHDGSGRSRGMRRARPAPREDAACRPQDDDHGKRPLQRHKRR 296 >UniRef50_Q12AB3 Pseudouridine synthase n=8 Tax=Proteobacteria RepID=Q12AB3_POLSJ Length = 544 Score = 264 bits (675), Expect = 3e-69, Method: Composition-based stats. Identities = 79/295 (26%), Positives = 148/295 (50%), Gaps = 11/295 (3%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPR-E 63 + +L+K ++++G+ SR E ++ I +G + +N + A IG +++ GD VKVNG+ I R + Sbjct: 95 ETPKLHKVLAQAGLGSRLEMEQLILEGRISVNAEPAHIGQRIQFGDTVKVNGKPIRVRID 154 Query: 64 AEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSK--RVFPIGRLDKDSQGLIFLTNHG 120 +IA +KP G V T +D + R + + + +GRLD +++GL+ LT+ G Sbjct: 155 PPPPRVIAYHKPSGEVVTHDDPQNRPTVFRRLPKLFQGKWQSVGRLDLNTEGLLLLTSSG 214 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK----KEAPFV 176 +L NK++ E+EY V V ++ E + + GV + V + ++ + A Sbjct: 215 ELANKLMHPRFGLEREYAVRVLGALSNEEKKRLLEGVTLDDGVAQFSSIEAGGGEGANCW 274 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDLFKL 235 +R+T+ +G NR++RRM E G+ V +L R R + L G+ G + +L + ++ L Sbjct: 275 YRVTISEGRNREVRRMFEAVGHAVSRLIRIRYGAMLLPRGLKRGAFVELDERDIWALTNA 334 Query: 236 IENSSSEVKPKAKAKPKT--AGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKK 288 + S S P+ K G + + + + R + R +P + Sbjct: 335 VTRSESRADPRGAPKHPGHVRGDEGGEFRPGRGPRRNERSRGDRGRLPAPESGQA 389 >UniRef50_B4U4Q4 Pseudouridine synthase n=15 Tax=Lactobacillales RepID=B4U4Q4_STREM Length = 266 Score = 263 bits (674), Expect = 4e-69, Method: Composition-based stats. Identities = 83/240 (34%), Positives = 140/240 (58%), Gaps = 12/240 (5%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREAE 65 +R+NKYI+ +G+ SRR+A+ I++G V LNG+ T + VK GD+V++ G I E Sbjct: 27 MRINKYIAHAGVASRRKAEELIKRGLVTLNGQVVTDLATTVKSGDLVEIEGSPI---YNE 83 Query: 66 DLVLIALNKPVGIVST-TEDGERDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTNHGDLV 123 + V LNKP G++S+ ++D R ++D + +R++P+GRLD D+ GL+ LTN GD Sbjct: 84 EKVYYLLNKPRGVISSVSDDKGRQTVIDLLPQVKERIYPVGRLDWDTSGLLILTNDGDFT 143 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKE------APFVF 177 +K++ N+ +K YL V +T+E +R ++ GV I G TK + + + Sbjct: 144 DKMIHPRNEIDKVYLARVKGVVTKESLRPLTRGVVIDGKKTKPARYRIIRVEPDKNRSIV 203 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIE 237 +T+ +G + Q+++M E G+ V KL RT+ ++ + G+ GE R L+ E+ L L Sbjct: 204 ELTIHEGRHHQVKKMFEAVGHLVDKLSRTQFGSLDVRGLKPGEARRLSKKEVSQLHHLAS 263 >UniRef50_C8P160 Pseudouridine synthase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P160_ERYRH Length = 262 Score = 263 bits (673), Expect = 6e-69, Method: Composition-based stats. Identities = 124/239 (51%), Positives = 159/239 (66%), Gaps = 8/239 (3%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREA 64 S+RLNKYIS+SG CSRR+ADR+I +G V ++G AT+G QV PG V V G + + Sbjct: 24 ESLRLNKYISDSGYCSRRQADRFIAEGVVAIDGVTATVGQQVLPGQRVTVEGNHVTIDD- 82 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVN 124 + V IALNKP GI TT+ NI DF+N+ K +FPIGRLDKDS GLI LTN GD+VN Sbjct: 83 -EKVYIALNKPRGITCTTDGAIEGNISDFMNYPKMIFPIGRLDKDSSGLILLTNDGDIVN 141 Query: 125 KILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILG------TVTKKCKVKKEAPFVFR 178 KILR H+KEY+V+V+K I E+FI MS GV I VT V++ AP FR Sbjct: 142 KILREEYGHDKEYIVSVNKTIDEDFITKMSKGVEIYNQQTHRMQVTNPSDVEQVAPKTFR 201 Query: 179 ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIE 237 I L QGLNRQIRRM + G++V L R RIMN++L + +GEWR L+ EL ++ + I+ Sbjct: 202 IVLNQGLNRQIRRMTKALGFKVTTLNRVRIMNINLGDLKVGEWRYLSVHELEEMNRRIQ 260 >UniRef50_B4D966 Pseudouridine synthase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D966_9BACT Length = 237 Score = 263 bits (672), Expect = 7e-69, Method: Composition-based stats. Identities = 88/240 (36%), Positives = 130/240 (54%), Gaps = 6/240 (2%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREAE 65 +RLN++++ +G+ SRR + I G V +NG+ T + QV P D VKV +L+ E Sbjct: 1 MRLNRFLASAGLGSRRGVEELITSGQVRINGQVVTDLSTQVGPTDAVKVGSRLLRT---E 57 Query: 66 DLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHS-KRVFPIGRLDKDSQGLIFLTNHGDLV 123 + + LNKP G V T D +R I D + + RV+ +GRLDKDS+GL+ +TN GDL Sbjct: 58 QKITVLLNKPAGYVCTASDERDRKTIFDLLPANWPRVYHVGRLDKDSEGLLLVTNDGDLS 117 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQ 183 + EKEY V +DKP + + G I+G K +V+ P +TL Q Sbjct: 118 LALTHPRYKIEKEYEVLLDKPFNPQDREKLLKGFHIIGGRAKAERVEILNPTHLSLTLTQ 177 Query: 184 GLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSSSEV 243 G+ RQIR M GYEV++L R R+ + + + GEWR LT E+ L + S+ + Sbjct: 178 GIKRQIRLMLYDLGYEVERLARIRLGPLKIGEMRPGEWRLLTSKEIAALKGPAQPSAPKA 237 >UniRef50_P0AA45 Ribosomal small subunit pseudouridine synthase A n=156 Tax=Gammaproteobacteria RepID=RSUA_ECO57 Length = 231 Score = 263 bits (672), Expect = 7e-69, Method: Composition-based stats. Identities = 64/231 (27%), Positives = 115/231 (49%), Gaps = 8/231 (3%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREAE 65 +RL+K+I++ SR A R I V ++G+ ++ P V +G + + Sbjct: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHG- 59 Query: 66 DLVLIALNKPVGIVSTTEDGERDNIVDFVNHSK--RVFPIGRLDKDSQGLIFLTNHGDLV 123 LNKP G V +T+D + ++ F++ ++ GRLD D+ GL+ +T+ G Sbjct: 60 -PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTV--TKKCKVKKEAPFVFRITL 181 ++I + EK YLVT++ P+ ++ + GV + TK ++ P R+T+ Sbjct: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTI 178 Query: 182 VQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELID 231 +G Q++RM G V +L R RI ++L + GE+R LT++E+ Sbjct: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIAS 229 >UniRef50_Q6G8H4 Pseudouridine synthase n=61 Tax=Firmicutes RepID=Q6G8H4_STAAS Length = 231 Score = 263 bits (672), Expect = 7e-69, Method: Composition-based stats. Identities = 68/231 (29%), Positives = 119/231 (51%), Gaps = 8/231 (3%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIG-DQVKP-GDVVKVNGQLIEPREA 64 +R++K+++ G+ +R E + +++G V +N + ++P D + V G+LIE E Sbjct: 1 MRIDKFLANMGVGTRNEVKQLLKKGLVNVNEQVIKSPKTHIEPENDKITVRGELIEYIEN 60 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRV--FPIGRLDKDSQGLIFLTNHGDL 122 V I LNKP +S TED ++D + + + F +GRLDKD++GL+ +TN GD Sbjct: 61 ---VYIMLNKPKDYISATEDHHSKTVIDLIPEYQHLNIFTVGRLDKDTEGLLLITNDGDF 117 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLV 182 ++++ K+Y V PITE+ I+ GV + K + +T+ Sbjct: 118 NHELMSPNKHVSKKYEVISANPITEDDIQAFKEGVTLSDGKVKPAILTYIDNQTSHVTIY 177 Query: 183 QGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDL 232 +G Q++RM EV L R +I ++ L + GE+R LT+++ L Sbjct: 178 EGKYHQVKRMFHSIQNEVLHLRRIKIADLELDSNLDSGEYRLLTENDFDKL 228 >UniRef50_B9KY92 Pseudouridine synthase n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KY92_THERP Length = 282 Score = 263 bits (672), Expect = 7e-69, Method: Composition-based stats. Identities = 86/280 (30%), Positives = 139/280 (49%), Gaps = 10/280 (3%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPG-DVVKVNGQLIEPR 62 + RL + ++ G+ SRR+A+ I G V ++G +G +V P + V+G+ + Sbjct: 6 TEQRLQRVLAAHGVASRRKAEELILAGRVTVDGVVVRELGRKVDPERQEICVDGKPL--- 62 Query: 63 EAEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGD 121 +E I L+KPVG ++TT D R ++D V +RV P+GRLD+DS GL+ LTN GD Sbjct: 63 HSEPRRYIVLHKPVGYITTTADEYGRKTVLDLVQVPERVVPVGRLDRDSSGLLLLTNDGD 122 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA----PFVF 177 L+ +I + EKEY V VD E + GVP+ G + +++ V+ Sbjct: 123 LIYRITHPRYELEKEYEVLVDGFPPPEVEEALRRGVPVDGRPVRIRRLEAIRVEPQGTVY 182 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIE 237 R+ + +G NR IRR+ E GY V +L+R R+ + L +P G WRDLT E+ L + + Sbjct: 183 RVVIHEGRNRIIRRVFERVGYPVLRLQRVRVGPLRLGDLPPGRWRDLTASEVAALRRAVG 242 Query: 238 NSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNG 277 + + G P + ++ + Sbjct: 243 LPEFPEGAVGRERKARGGRGMPARRGDRRPSGVRKEHRRR 282 >UniRef50_A0PYR9 Pseudouridine synthase n=9 Tax=Clostridium RepID=A0PYR9_CLONN Length = 229 Score = 262 bits (670), Expect = 1e-68, Method: Composition-based stats. Identities = 112/230 (48%), Positives = 153/230 (66%), Gaps = 3/230 (1%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAED 66 +R+NK +S GICSR+EA+R IEQ + +NGK G V+ D + ++ + I+P + Sbjct: 1 MRINKLLSNYGICSRKEANRIIEQNRIIVNGKLCIPGQWVEESDEILLDNKRIKP---KK 57 Query: 67 LVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNKI 126 V I LNKPVGI T+ + NI+DFVN+ +FP+GRLDK S+GLI LTN G+L NKI Sbjct: 58 KVYILLNKPVGITCTSSKDIKANIIDFVNYRDYIFPVGRLDKKSEGLIILTNDGELSNKI 117 Query: 127 LRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQGLN 186 L + N HEKEY+V VDKP +EFI MS GV + G T+ C V++ F+I L QGLN Sbjct: 118 LESENMHEKEYVVKVDKPFDDEFIENMSKGVQLKGVKTRTCIVRRIDECTFKIILTQGLN 177 Query: 187 RQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLI 236 RQIR+M FGY V KL+R RIMN+ + GI +G +R T+DEL ++ ++ Sbjct: 178 RQIRKMTRAFGYTVVKLKRIRIMNLKIDGIDIGSFRHFTEDELNNIRVMV 227 >UniRef50_A3CPQ5 Pseudouridine synthase n=3 Tax=Firmicutes RepID=A3CPQ5_STRSV Length = 242 Score = 262 bits (670), Expect = 1e-68, Method: Composition-based stats. Identities = 83/245 (33%), Positives = 140/245 (57%), Gaps = 12/245 (4%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEPREAE 65 +R+NKYI+ +GI SRR+A+ I QG V +NG+ + VK GD V+V GQ I E Sbjct: 1 MRINKYIAHAGIASRRKAEELIRQGKVSINGQVVRELATNVKSGDRVEVEGQPI---YNE 57 Query: 66 DLVLIALNKPVGIVST-TEDGERDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTNHGDLV 123 + V LNKP G++S+ ++D R +V+ + +R++P+GRLD D+ G++ LTN GD Sbjct: 58 EKVYYLLNKPRGVISSVSDDKGRKTVVELLPQVKERIYPVGRLDWDTSGILILTNDGDFT 117 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKE------APFVF 177 ++++ N+ +K Y+ V +E +R ++ G+ I G TK + V Sbjct: 118 DEMIHPRNEIDKVYVARVKGLANKEVLRPLTRGIEIEGRKTKPAVYEIIKVDPAKNRSVV 177 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIE 237 ++T+ +G N Q+++M + G +V KL RTR ++ L+G+ GE+R L+ E+ L L Sbjct: 178 QLTIHEGRNHQVKKMFQAVGLQVDKLSRTRFGHLDLTGLKPGEYRKLSKKEVSQLHTLAV 237 Query: 238 NSSSE 242 + + Sbjct: 238 TKTKK 242 >UniRef50_C6VXU0 Pseudouridine synthase n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VXU0_DYAFD Length = 555 Score = 261 bits (669), Expect = 1e-68, Method: Composition-based stats. Identities = 93/237 (39%), Positives = 140/237 (59%), Gaps = 9/237 (3%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEP 61 +RLN+YI+ +GICSRREAD I G + +NGK T +G +V+P DVVK + + P Sbjct: 319 ETDEIRLNRYIANAGICSRREADDLISSGQISVNGKIVTEMGYKVRPTDVVKYGKKALNP 378 Query: 62 REAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHS--KRVFPIGRLDKDSQGLIFLTN 118 E +V I +NKP ++TT+D E R ++D + + +RV+P+GRLD+++ GL+ LTN Sbjct: 379 ---EKMVYILINKPKDYITTTDDPEERKTVLDIIAGACSERVYPVGRLDRNTTGLLLLTN 435 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKE--APFV 176 G+L K+ + +K Y +DKPIT E + AGV + + +V V Sbjct: 436 DGELAEKLTHPSSGIKKIYQAELDKPITTEDFEQLKAGVELEDGFIRPDEVGLVTPDAQV 495 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF 233 + + G NR +RRM EH GYEV+KL+RT ++ +P G+WR LT+ E+I L Sbjct: 496 VGLEIHSGRNRIVRRMFEHLGYEVQKLDRTVFAGLNKKDLPRGKWRFLTEKEVIKLK 552 >UniRef50_C2MA52 Pseudouridine synthase n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2MA52_9PORP Length = 472 Score = 261 bits (668), Expect = 2e-68, Method: Composition-based stats. Identities = 83/243 (34%), Positives = 130/243 (53%), Gaps = 10/243 (4%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEPRE 63 +RLNK++S SG+CSRR AD+YI G V +NG +G QV P D V V+ + + Sbjct: 204 EPIRLNKFLSNSGLCSRRTADQYIAAGRVKVNGAVVSELGSQVLPTDQVMVDDKPVTL-- 261 Query: 64 AEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHS--KRVFPIGRLDKDSQGLIFLTNHG 120 E V + LNKP V+T D E R ++D V+++ +R++PIGRLD+++ G++ LTN G Sbjct: 262 -EAKVYVLLNKPKNCVTTLTDPEGRRTVMDLVHNACTERIYPIGRLDRNTTGILLLTNDG 320 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFV---F 177 DL +++ +K Y V +DK +T E ++ ++ G + + Sbjct: 321 DLAVRLMHPAFRKKKIYEVALDKEVTVEHMQMIAHGFELEDGEIHADAISYITGQTHDKV 380 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIE 237 I + G NR +RR+ EH GY V L+R ++ +P G WR LT +E+ L I+ Sbjct: 381 GIEIHSGRNRIVRRIFEHLGYRVVHLDRVYYAGLTKKDLPRGRWRYLTPEEVRYLRMGIK 440 Query: 238 NSS 240 Sbjct: 441 EQE 443 >UniRef50_A5V220 Pseudouridine synthase n=5 Tax=Bacteria RepID=A5V220_ROSS1 Length = 624 Score = 261 bits (668), Expect = 2e-68, Method: Composition-based stats. Identities = 91/287 (31%), Positives = 145/287 (50%), Gaps = 9/287 (3%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKP-GDVVKVNGQLIEPR 62 S+ RL K ++ +GI SRR+ + YI G V +NGK G +V P D + V+G+ I Sbjct: 2 SAERLQKVLASAGIASRRDCEEYIAAGRVMVNGKVVRIPGTRVDPEHDEILVDGRPIGKI 61 Query: 63 EAEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGD 121 + L+KP G+VSTT+D R ++D VN +R+FP+GRLD DS+GL+ LT+ G+ Sbjct: 62 HH--RTYVMLHKPAGVVSTTDDPQGRPTVIDLVNLEQRLFPVGRLDYDSEGLLLLTDDGE 119 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPF----VF 177 L K+ EKEY V +++ + +R GV + G T V+ Sbjct: 120 LTQKLTHPSYQVEKEYRVLLNEAPSPAALRAWRTGVELDGVKTAPAWVELIERTPDGAWV 179 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIE 237 R+ L +G RQIR + GYEV++L R R ++L +P G WR LTD+E+ L + E Sbjct: 180 RVILHEGRKRQIREVARVLGYEVRRLIRVREGPLTLGDLPSGTWRFLTDEEVDMLREHAE 239 Query: 238 NSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPG 284 +++ + + + + + + + R G + T Sbjct: 240 RNAAVAEAEQPRRREQGETQVSGGRRLRRITPSARLLQKGDQVTDTT 286 >UniRef50_UPI00016C3D27 ribosomal large subunit pseudouridine synthase B n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3D27 Length = 271 Score = 261 bits (667), Expect = 2e-68, Method: Composition-based stats. Identities = 87/273 (31%), Positives = 138/273 (50%), Gaps = 12/273 (4%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGD-VVKVNGQLIEPREA 64 RLNKY++ +G+ SRR D+ I G V +NG + T +G ++ P + V+ Q + A Sbjct: 2 ERLNKYLAHAGVGSRRHCDKLISAGRVKVNGVKVTELGLKIDPSAHQIAVDDQPVR---A 58 Query: 65 EDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHSK-RVFPIGRLDKDSQGLIFLTNHGDL 122 E LV A+NKPVG + T D R VD + H + RV+ +GRLD+ S GL+ +TN GDL Sbjct: 59 EKLVYWAVNKPVGHLCTNHDPAGRPRAVDLLPHVEQRVYTVGRLDEGSDGLLLMTNDGDL 118 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKE----APFVFR 178 + K Y V V T++ ++ + GV + + K+ R Sbjct: 119 AQGLTHPRYGVPKMYFVLVAGRPTDDDLQKLMDGVWLSDGKVRAKSAKRIKAQGNGTWVR 178 Query: 179 ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIEN 238 + L +G NR+IRRM FG++V +L+R I V L +P G+ R ++D+EL L + Sbjct: 179 VVLTEGKNREIRRMLAKFGHKVMRLKRVAIGPVKLDKLPKGKARRISDEELKALKAFVTR 238 Query: 239 SSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGG 271 + ++ A+ K G K ++ + G Sbjct: 239 ARQKI-TAARLKAADGGRKTSQDAPKRPRKTDG 270 >UniRef50_A1WE21 Pseudouridine synthase n=1 Tax=Verminephrobacter eiseniae EF01-2 RepID=A1WE21_VEREI Length = 520 Score = 260 bits (666), Expect = 3e-68, Method: Composition-based stats. Identities = 75/295 (25%), Positives = 144/295 (48%), Gaps = 12/295 (4%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPR-E 63 + +L+K ++++G+ SR E ++ I +G + +N + A IG +++ GD VKVNG+ I R + Sbjct: 169 ETPKLHKVLAQAGLGSRLEMEQLILEGRISVNNEPAHIGQRIQFGDQVKVNGKPIRYRID 228 Query: 64 AEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSK--RVFPIGRLDKDSQGLIFLTNHG 120 +IA +KPVG V + +D R + + + +GRLD +++GL+ LT+ G Sbjct: 229 PPPARVIAYHKPVGEVVSHDDPHNRPTVFRRLPRLVQGKWQSVGRLDLNTEGLLLLTSSG 288 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA----PFV 176 +L N+++ E+EY V V ++ E + + GV + + ++ Sbjct: 289 ELANQLMHPRFGLEREYAVRVLGALSNEEKQKLLDGVRLDDGIASFGTIEDGGGEGANCW 348 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDLFKL 235 +R+T+ +G NR++RRM E G+ V +L R R + L G+ G W +L + ++ L + Sbjct: 349 YRVTIAEGRNREVRRMLEAVGHAVSRLIRIRYGAMVLPRGLKRGTWLELDERDIRALAQA 408 Query: 236 IENSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKGR 290 + + + P A + + G R + + + R + R Sbjct: 409 AGARAPALSTRT---PTDARAGKQRERSGPPMGNGPRRGRSPQGPAAGARAQNPR 460 >UniRef50_Q8ZGM2 Ribosomal small subunit pseudouridine synthase A n=134 Tax=Gammaproteobacteria RepID=RSUA_YERPE Length = 235 Score = 260 bits (666), Expect = 3e-68, Method: Composition-based stats. Identities = 63/231 (27%), Positives = 118/231 (51%), Gaps = 8/231 (3%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGD-QVKPGDVVKVNGQLIEPREAE 65 +RL+K++S+ SR R + V ++G+ G ++ P V+ +G ++ Sbjct: 1 MRLDKFLSQQLGVSRALVARELRAKRVTIDGEVVKSGAIKLTPEQDVRFDGNPLQQMVG- 59 Query: 66 DLVLIALNKPVGIVSTTEDGERDNIVDFVNHS--KRVFPIGRLDKDSQGLIFLTNHGDLV 123 LNKP G V +TED + ++ F++ ++ GRLD D+ GL+ +T+ G Sbjct: 60 -PRYFMLNKPQGYVCSTEDPDHPTVLYFLDEPVAYKLHAAGRLDIDTTGLVLMTDDGQWS 118 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTV--TKKCKVKKEAPFVFRITL 181 +++ + EK YLVT++ P++++ + + GV + TK ++ P R+T+ Sbjct: 119 HRVTSPRHHCEKTYLVTLEHPLSDDTAQQFADGVQLYNEKSLTKPAQLDVIEPQRVRLTI 178 Query: 182 VQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDELID 231 +G Q++RM G V +L R RI +++L + GE+R LT +E+ Sbjct: 179 SEGRYHQVKRMFAAVGNRVIELHRERIGDITLDDDLAPGEYRPLTTEEIAS 229 >UniRef50_C4Z9Y4 Pseudouridine synthase n=16 Tax=Bacteria RepID=C4Z9Y4_EUBR3 Length = 250 Score = 260 bits (666), Expect = 3e-68, Method: Composition-based stats. Identities = 71/238 (29%), Positives = 120/238 (50%), Gaps = 12/238 (5%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPG-DVVKVNGQLIEPREA 64 +RL+K++SE G+ +R E + I+ G + +NG A +V D V VNG++++ + Sbjct: 12 IRLDKFLSEMGLGTRSEVKKLIKTGQIAINGTVAAKPETKVDTDADEVSVNGRIVKYQRY 71 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKR--VFPIGRLDKDSQGLIFLTNHGDL 122 E NKP G VS T D D ++D++ + +FP+GRLD D++GL+ +TN G L Sbjct: 72 E---YYLFNKPSGCVSATCDNVHDTVMDYITDAVHDDLFPVGRLDIDTEGLLLITNDGAL 128 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI-LGTVTKKCKV---KKEAPFVFR 178 +++L K Y +D +T + I G+ I TK ++ K + Sbjct: 129 SHELLSPSKHVAKTYYARIDGEVTLDDIIRFKEGIDIGEEKPTKPAELVIKKSGSVSEIE 188 Query: 179 ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDELIDLFKL 235 +T+ +G Q++RM E G V L+R + + L + G +R LT E L ++ Sbjct: 189 LTITEGKFHQVKRMFEALGKRVIYLKRISMGPLKLPDDLKTGTYRALTQAETDMLMQI 246 >UniRef50_Q3MC44 Pseudouridine synthase n=21 Tax=Cyanobacteria RepID=Q3MC44_ANAVT Length = 288 Score = 260 bits (666), Expect = 4e-68, Method: Composition-based stats. Identities = 86/259 (33%), Positives = 130/259 (50%), Gaps = 15/259 (5%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPG-DVVKVNGQLIEPREAED 66 RL K +++ GI SRREA+ I + V +NG A +G +V P D++ V+G+ + + Sbjct: 30 RLQKVLAQWGIASRREAEEMIRRSRVQINGTLAELGQKVNPERDIITVDGKSVSAQRHHR 89 Query: 67 LVLIALNKPVGIVSTTEDG-ERDNIVDFVNHSKR----VFPIGRLDKDSQGLIFLTNHGD 121 L + LNKP G+VST D R ++D + R + P+GRLD S G + LTN GD Sbjct: 90 LTYLLLNKPTGVVSTCYDPQGRKTVLDLLPEELRKGSGLHPVGRLDAYSTGALILTNDGD 149 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKE----APFVF 177 L K+ ++ K Y + V E ++ GV + G T+K KV Sbjct: 150 LTFKLTHPSHNIPKTYQILVKGHPPEAVLKMWREGVLLDGRKTRKAKVSLLESLAEKSRL 209 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSG-----IPLGEWRDLTDDELIDL 232 I L +G NRQIRR+ E GY V KL RT I ++ L + G +R L DDE+ L Sbjct: 210 EIVLQEGRNRQIRRVAEQLGYPVIKLHRTAIGSIQLQTSKQPLLRAGNYRILRDDEIRSL 269 Query: 233 FKLIENSSSEVKPKAKAKP 251 + +++ ++ +P Sbjct: 270 QEQLKHIPTQRIKVQNPQP 288 >UniRef50_C4V2S0 Pseudouridine synthase n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V2S0_9FIRM Length = 290 Score = 260 bits (665), Expect = 4e-68, Method: Composition-based stats. Identities = 83/293 (28%), Positives = 132/293 (45%), Gaps = 24/293 (8%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEPRE 63 RL K IS +G SRR A+ I G V ++G T +G + + V+G I R Sbjct: 2 EERLQKIISNAGAASRRAAEALIRAGRVTVDGLPVTALGGKYDAARHEIAVDGTPI--RR 59 Query: 64 AEDLVLIALNKPVGIVST-TEDGERDNIVDFVNHSK-RVFPIGRLDKDSQGLIFLTNHGD 121 E I L+KP G +ST +D R ++D + H R++P+GRLD D++GL+ +TN G Sbjct: 60 NERRFYILLHKPRGCLSTAYDDRGRRTVLDLLPHFPARLYPVGRLDADTEGLLIITNDGA 119 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKK----EAPFVF 177 + +L + +K Y V +TE+ + + G+ + T +++ V Sbjct: 120 MTQGLLHPRFEIDKVYRAEVTGNVTEDGLTALRNGILLDDGRTAPARLRVLHREGERTVV 179 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIE 237 + +G RQ+RRM G V++L R R ++L G+ G +R LT DE+ +L K+ Sbjct: 180 ETIIHEGRKRQVRRMFAAIGCRVQRLCRVRFAMLTLDGVSCGSFRHLTSDEIHELKKIAG 239 Query: 238 NSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKGR 290 S + + GGR S + P RK R Sbjct: 240 VMHSGEDSR--------------RRRGSCGNDGGRCGSGTRGQCDPARKDAAR 278 >UniRef50_A4BW35 Pseudouridine synthase n=3 Tax=Flavobacteriaceae RepID=A4BW35_9FLAO Length = 305 Score = 260 bits (664), Expect = 6e-68, Method: Composition-based stats. Identities = 87/240 (36%), Positives = 136/240 (56%), Gaps = 10/240 (4%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEP 61 + +RLNKYI+ SG+CSRREAD YIE G+V +NG T +G +V+P DVV+ +G I P Sbjct: 68 ESTGIRLNKYIANSGVCSRREADTYIEHGSVEVNGNLVTEMGYKVQPDDVVRFDGTGITP 127 Query: 62 REAEDLVLIALNKPVGIVSTTED-GERDNIVDFVNH--SKRVFPIGRLDKDSQGLIFLTN 118 E I LNKP ++T +D R ++D +++ +R++P+GRLD+++ GL+ TN Sbjct: 128 ---EQKKYILLNKPKNYITTMDDDRGRKTVMDLISNATKERIYPVGRLDRNTTGLLLFTN 184 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVT---KKCKVKKEAPF 175 G+L K+ +D K Y ++DK + + + + V I G V + Sbjct: 185 DGELAKKLTHPKHDVRKLYHASLDKKLELKDLEKLRGEVLIEGKKVFIDAVSYVDGQPKS 244 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 I + G NR +R++ EH GY+V KL+R ++ +P G WR+LT+ EL +L L Sbjct: 245 EVGIEIHSGRNRIVRKIFEHLGYKVSKLDRVIFAELTKRNLPRGRWRELTNQELSNLQML 304 >UniRef50_A4J9G8 Pseudouridine synthase n=47 Tax=Bacteria RepID=A4J9G8_DESRM Length = 249 Score = 259 bits (663), Expect = 7e-68, Method: Composition-based stats. Identities = 76/245 (31%), Positives = 130/245 (53%), Gaps = 13/245 (5%) Query: 1 MLPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPG-DVVKVNGQL 58 M + +RL++ ++ G+ +R+E + I+ V +NG+ A G + P D ++V G++ Sbjct: 1 MAENEKLRLDRLLNHMGLGTRKEIKKLIKAKQVMVNGELAMDPGLHIFPQRDHIEVQGEV 60 Query: 59 IEPREAEDLVLIALNKPVGIVSTTEDGERDNIVDFVN---HSKRVFPIGRLDKDSQGLIF 115 IE RE + + LNKP ++S TED ++D ++ HS FP+GRLDKD++GL+ Sbjct: 61 IEYREY---IYLMLNKPQDVLSATEDASDKVVIDLLDPTYHSFNPFPVGRLDKDTEGLLL 117 Query: 116 LTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGT-VTKKCKVKKEAP 174 LTN+G L +++L K Y V +TEE + + GV + T ++K Sbjct: 118 LTNNGKLAHQLLSPKKHVPKTYYALVQGLVTEEDVAAFARGVELDDGYRTLPGQLKIIRS 177 Query: 175 ---FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELI 230 +T+ +G Q++RM E G V L+R + + L + GE+R+LTD+E+ Sbjct: 178 APQSEIELTIYEGKYHQVKRMFEAVGKRVIYLKRLSMGPLVLDNNLKPGEYRELTDEEIA 237 Query: 231 DLFKL 235 L + Sbjct: 238 LLQEA 242 >UniRef50_Q1J0B9 Pseudouridine synthase n=5 Tax=Deinococci RepID=Q1J0B9_DEIGD Length = 253 Score = 259 bits (663), Expect = 7e-68, Method: Composition-based stats. Identities = 79/240 (32%), Positives = 121/240 (50%), Gaps = 3/240 (1%) Query: 2 LPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEP 61 + + RL K ++ +G+ SRR A+ I G V +NG+ AT+G V P D V+V+G+LIE Sbjct: 1 MTEGGERLQKRLARAGVASRRAAEDLITAGRVTVNGQIATLGRTVMPDDEVRVDGRLIEA 60 Query: 62 REAEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHG 120 A++ V L KP G V+T D R N++ + + P+GRLDKDS+GL+ LT G Sbjct: 61 P-AQESVTFLLYKPAGYVTTARDEYGRRNVLSAMPPIPGLHPVGRLDKDSEGLLLLTTDG 119 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRIT 180 L + HEK Y +R + G+ + + + +T Sbjct: 120 QLTLTLTHPRYGHEKAYRAWTAGQPVAAELRVLETGIELADGPARALSARPARGGAL-VT 178 Query: 181 LVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSS 240 L +G NRQ+RRM + GY V +L R R+ + L + GE+R L+ +L DL + Sbjct: 179 LTEGRNRQVRRMLDAIGYPVHRLLRYRVGGLWLGDLEPGEYRLLSPRDLHDLLHPAQVPR 238 >UniRef50_C6Y027 Pseudouridine synthase n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6Y027_PEDHD Length = 472 Score = 259 bits (662), Expect = 8e-68, Method: Composition-based stats. Identities = 86/243 (35%), Positives = 138/243 (56%), Gaps = 11/243 (4%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKP-GDVVKVNGQLIE 60 D +RLN+YIS SGICSRR+AD IE G V +NG+ +G ++ P D V+ NG+L++ Sbjct: 233 DDGLIRLNRYISNSGICSRRKADELIEAGVVSVNGEVVSELGHKIDPVKDQVRYNGELLK 292 Query: 61 PREAEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNH--SKRVFPIGRLDKDSQGLIFLT 117 E + + LNKP ++TT+D ER ++ V +R++P+GRLD+++ GL+ +T Sbjct: 293 R---EKKIYVLLNKPKDYITTTDDPQERRTVMQLVEKASRERIYPVGRLDRNTTGLLLMT 349 Query: 118 NHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKK---EAP 174 N GDL +K+ N K Y V + + +++ + + G+ + + K V + Sbjct: 350 NDGDLADKLSHPKNGITKIYHVELSRSLSQGDLNKIQFGLELEDGIIKPDSVSYVTGGSK 409 Query: 175 FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFK 234 I + G NR +RR+ EH GY+V KL+R N++ +P G WR L + ELI + Sbjct: 410 REVGIQIHSGKNRIVRRIFEHLGYDVVKLDRVVYGNLTKKDLPRGRWRYLEEHELIQIKH 469 Query: 235 LIE 237 LI+ Sbjct: 470 LIK 472 >UniRef50_B3QY10 Pseudouridine synthase n=10 Tax=Chlorobiaceae RepID=B3QY10_CHLT3 Length = 297 Score = 259 bits (662), Expect = 1e-67, Method: Composition-based stats. Identities = 89/254 (35%), Positives = 136/254 (53%), Gaps = 8/254 (3%) Query: 2 LPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKP-GDVVKVNGQLI 59 + D +RLNK+I+ G SRR+AD IEQG V +NGK +G +V D V VNG+ + Sbjct: 38 INDPIIRLNKFIALCGEASRRKADEMIEQGEVMVNGKVVMELGYKVDRRADEVVVNGKKL 97 Query: 60 EPREAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTN 118 E + I LNKP +V+T+ D + R +V+ V RVFP+GRLD+D+ G++ LTN Sbjct: 98 H--ENTQKIYILLNKPKDVVTTSSDEKSRKTVVELVGLKDRVFPVGRLDRDTTGVLLLTN 155 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPIL--GTVTKKCKVKKEAP-F 175 GDL ++ +K+Y+ T+DK IT ++ + G + G C + + Sbjct: 156 DGDLTYRLTHPTFGVQKQYVATLDKKITSVDLQNIKKGFRLKDTGEKVSPCNARILDDGY 215 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 + + +G N QI RM FGY VKKL R + + + GEWR LT E+ L+K Sbjct: 216 TIWVAIHEGKNHQIHRMFWSFGYNVKKLVRVAYGGLEVGTMRRGEWRFLTQLEVSKLYKQ 275 Query: 236 IENSSSEVKPKAKA 249 ++ + K ++ Sbjct: 276 VQLEGKQRIQKNQS 289 >UniRef50_A3ZQL4 Pseudouridine synthase n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZQL4_9PLAN Length = 517 Score = 258 bits (661), Expect = 1e-67, Method: Composition-based stats. Identities = 84/291 (28%), Positives = 136/291 (46%), Gaps = 15/291 (5%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKP-GDVVKVNGQLIEPREA 64 RL+K ++ +GI SRR+ + I++G V ++GK T +G +V P + V+GQ ++ Sbjct: 17 ERLHKVLAFAGIDSRRKCEALIQEGRVEVDGKFVTELGMKVDPEHQEILVDGQRLKFG-- 74 Query: 65 EDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLV 123 V LNKP G++ST D R ++D V R+F IGRLD+ S+GLI +TN G+L Sbjct: 75 -KRVYYMLNKPPGVLSTNFDPAGRTRVIDMVPQDVRLFTIGRLDRASEGLIVVTNDGELA 133 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKV----KKEAPFVFRI 179 N++ + EK Y V V + I + GV + + V K + + Sbjct: 134 NRLAHPRYEIEKTYRVEVAGHPEPDAITFVRRGVHLAEGFVQPVSVVMKRKNKQSTTLEV 193 Query: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL---- 235 L +G NR+IRR+ G++V +L+R + + L +P G +R+L E L Sbjct: 194 ILDEGKNREIRRLMAKIGHKVLRLKRIAMGPLRLGEMPEGAFRELKSAETKALRDAAFGV 253 Query: 236 -IENSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGR 285 K+ + G P K G +P G + + G+ Sbjct: 254 GAGKPKKPKPRKSSTPGEREGPIFPETKTIAKGRAGAKPTETGAKSRATGK 304 >UniRef50_A4SY81 Pseudouridine synthase n=5 Tax=Proteobacteria RepID=A4SY81_POLSQ Length = 587 Score = 258 bits (661), Expect = 1e-67, Method: Composition-based stats. Identities = 71/287 (24%), Positives = 137/287 (47%), Gaps = 9/287 (3%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPR-EA 64 +V+L+K +++ G+ SRR+ + I QG V +NG A IG ++ P D V++NG+ + + + Sbjct: 196 TVKLHKVLADVGMGSRRDMEDLIIQGRVSVNGLPAHIGQRIGPTDQVRINGKPVHRKIQT 255 Query: 65 EDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSK--RVFPIGRLDKDSQGLIFLTNHGD 121 + +I +KP G + + D E R + D + + R +GRLD +++GL+ T G+ Sbjct: 256 KPPRVIMYHKPAGEIVSQSDPEGRPTVFDRLPKPRQGRWIAVGRLDFNTEGLLLFTTSGE 315 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA----PFVF 177 L N+++ E+EY V + +++E + +G+ + K ++ + Sbjct: 316 LANRLMHPRYGVEREYAVRILGDLSQENTALLKSGITLDDGQAKFLRLAMGGGEGANRWY 375 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDELIDLFKLI 236 + L +G NR++RRM E G+ V +L RTR L + G+W ++ + +L K Sbjct: 376 HVALSEGRNREVRRMFEAVGHTVSRLIRTRYGIFLLPPRLRRGKWEEIEAGGIYNLMKSA 435 Query: 237 ENSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSP 283 + K ++ +RP + + + G R Sbjct: 436 GLKMPQPSDKGRSPNPNNRDRRPAGEDFQPDPMQTSVSYWGSRDALT 482 >UniRef50_C4XSY8 Pseudouridine synthase n=11 Tax=Desulfovibrionales RepID=C4XSY8_DESMR Length = 322 Score = 258 bits (660), Expect = 2e-67, Method: Composition-based stats. Identities = 95/299 (31%), Positives = 146/299 (48%), Gaps = 18/299 (6%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEPREAE 65 R+NK ++ +G+CSRR AD I G V +NG T G ++ P D + V+G + E Sbjct: 10 RINKALASAGVCSRRHADDLIAAGRVTVNGAVVTEAGLRIDPARDALAVDGAPVNLA-PE 68 Query: 66 DLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHS---KRVFPIGRLDKDSQGLIFLTNHGD 121 + +AL+K G+V+T D E R + D + KR+FP+GRLD S+GL+ LT G+ Sbjct: 69 IPITLALHKKPGVVTTASDPEGRPTVFDGLPEVWRGKRLFPVGRLDFFSEGLLLLTTDGE 128 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI-LGTVTKKCKVKK-----EAPF 175 L ++ K Y VTV +T + + M+ G+ + G + + Sbjct: 129 LALRLTHPRWHVPKRYRVTVRGQVTPDMLGTMARGMRLAEGERLAPVAARVVEGPAQDRS 188 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 + + L QG+NRQIRRMC G V +L R V+L +PLG R+LT EL L + Sbjct: 189 ILEMELHQGVNRQIRRMCRDLGLTVLRLARVSQGPVALGDLPLGACRELTPAELATLRQS 248 Query: 236 IENSSSEVKPKAKAKPKTA-GIKRPVVKMEKTAEKGGRP----ASNGKRFTSPGRKKKG 289 + ++V P TA G + + + + GG+ AS G+ T P R + Sbjct: 249 VGLDDADVAPAPPRPRPTAEGDTKRPPRPARPPQAGGKRPATKASGGETETGPRRDGQS 307 >UniRef50_A3HY40 Pseudouridine synthase n=1 Tax=Algoriphagus sp. PR1 RepID=A3HY40_9SPHI Length = 434 Score = 258 bits (659), Expect = 2e-67, Method: Composition-based stats. Identities = 86/240 (35%), Positives = 131/240 (54%), Gaps = 9/240 (3%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEP 61 D+ RLNKYI+ SGICSRREAD I +G V +NGK T +G +V D V G+ I P Sbjct: 198 EDTLFRLNKYIANSGICSRREADDLIAKGLVSVNGKVVTELGLKVSKFDRVVYQGKKINP 257 Query: 62 REAEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHS--KRVFPIGRLDKDSQGLIFLTN 118 E V + LNKP ++TT+D ER ++ V ++ +R+FP+GRLD+++ GL+ TN Sbjct: 258 ---EKPVYVLLNKPKDFITTTDDPLERKTVMALVGNACEERIFPVGRLDRNTTGLLLFTN 314 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKK--CKVKKEAPFV 176 G+L K+ N +K Y VT+DKP+T + + G+ + + +V + Sbjct: 315 DGELAAKLSHPSNQIKKIYQVTLDKPLTHNDEKDILEGLTLEDGEVEVDDMQVLSVDRKI 374 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLI 236 + + G NR +RR+ H GYEV L+R + + G +R L++ E+I L Sbjct: 375 LGLEIHVGKNRIVRRIFAHLGYEVTALDRVMYAGLDKKDLKRGNYRFLSEQEVIKLKYFA 434 >UniRef50_Q2S2G3 Pseudouridine synthase n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S2G3_SALRD Length = 249 Score = 257 bits (658), Expect = 3e-67, Method: Composition-based stats. Identities = 77/244 (31%), Positives = 135/244 (55%), Gaps = 12/244 (4%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPRE 63 +R+NKYI+ +G+CSRR+AD +EQG V ++G+R G V+ G V V+G+ + P E Sbjct: 9 EGMRINKYIAHAGVCSRRDADDLVEQGRVHIDGERVDQHGTCVREGQTVTVDGEEVYPLE 68 Query: 64 AEDLVLIALNKPVGIVSTTEDG-ERDNIVDFV----NHSKRVFPIGRLDKDSQGLIFLTN 118 E + LNKP +STT+D +R ++D + ++ +FP+GRLD+++ G++ ++N Sbjct: 69 FE---YLLLNKPKDTISTTDDPKDRRTVLDAIGVPEDNPSGLFPVGRLDRNTTGVLLVSN 125 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFV-- 176 GDL ++++ + K Y V V + + + GV + +V P Sbjct: 126 DGDLAHRLMHPRYEIPKIYYVRVQDDVKPHQLDQLKRGVELSDGAAAADQVAYLDPQRKT 185 Query: 177 -FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 + L +G NRQIRRM E G+ + +LER + ++ + GEWR L +E+ +L++ Sbjct: 186 DIALELHEGRNRQIRRMMEALGHTIVQLERAKYATLTTGRLQRGEWRRLEPEEVRELYQR 245 Query: 236 IENS 239 ++ Sbjct: 246 VDLQ 249 >UniRef50_D0U645 Pseudouridine synthase n=1 Tax=uncultured actinobacterium RepID=D0U645_9ACTN Length = 237 Score = 257 bits (657), Expect = 3e-67, Method: Composition-based stats. Identities = 86/238 (36%), Positives = 132/238 (55%), Gaps = 6/238 (2%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPG-DVVKVNGQLIEPR 62 + +RLNK I+++GI SRR AD IE G V +NG +G + P D V V+G+ I Sbjct: 2 AQMRLNKIIADAGITSRRGADELIEDGRVAVNGIIVREMGSKFDPEMDKVMVDGETITRT 61 Query: 63 EAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVN-HSKRVFPIGRLDKDSQGLIFLTNHG 120 + +AL+KP G++ST D E R ++ DF++ +R+F +GRLDKDS+GLI LTN G Sbjct: 62 LTKS--YLALHKPKGVLSTMFDPEGRPSLDDFIDLRKERLFHVGRLDKDSEGLILLTNDG 119 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRIT 180 DL + EK Y++ D + + + GV + + + K+ +P ++ Sbjct: 120 DLTFRATHPSFGLEKTYIIEFDGILPTGVDKVLLKGVELEDGMGRVLTFKQLSPKWIEVS 179 Query: 181 LVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIEN 238 + +G IRR+ E G V +L RT+ +SL P G WRDL D EL++L K ++ Sbjct: 180 IHEGRYHIIRRLMEAVGVNVLRLIRTKFGPISLGDTPEGRWRDLNDGELMNLRKALDL 237 >UniRef50_Q2NIZ3 Pseudouridine synthase n=5 Tax=Candidatus Phytoplasma RepID=Q2NIZ3_AYWBP Length = 245 Score = 257 bits (657), Expect = 3e-67, Method: Composition-based stats. Identities = 67/240 (27%), Positives = 121/240 (50%), Gaps = 15/240 (6%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEPREAED 66 RL K ++ + + SRR+A+ I + + +NGK +G +V D++ ++ + I Sbjct: 3 RLQKVLAYANVASRRKAEILILEKRIKVNGKIISELGTKVSSSDIITLDDKPITKATYS- 61 Query: 67 LVLIALNKPVGIVSTTEDG-ERDNIVDFVNHS--KRVFPIGRLDKDSQGLIFLTNHGDLV 123 LNKP G +ST +D R ++D + + +R++PIGRLD ++ GL+ +TN GDL Sbjct: 62 --YFLLNKPNGFLSTAKDKKNRPTVLDLIEEASIQRLYPIGRLDFNTTGLLLITNDGDLT 119 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCK--------VKKEAPF 175 K+ KEY V ++ + ++ + G+ I CK + Sbjct: 120 QKLTHPSFCIPKEYHVKINACLQKKDLSTFCKGIIIDKKYLAVCKEIDILKISYMPKPST 179 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 ++ + +G NRQ+R+M + GY+V KL+R R +++ + +G +R L E+ L L Sbjct: 180 WLKLVITEGKNRQVRKMMQALGYQVLKLKRYRYSFLTIENLTIGAYRPLKIHEIKKLKTL 239 >UniRef50_D0MIA1 Pseudouridine synthase n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MIA1_RHOM4 Length = 268 Score = 257 bits (657), Expect = 3e-67, Method: Composition-based stats. Identities = 81/245 (33%), Positives = 137/245 (55%), Gaps = 10/245 (4%) Query: 7 VRLNKYISESGIC-SRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAE 65 +RLN+Y++ +G+C SRR+AD I G V +NG+ A +G +V P D+V+VNG + P+ Sbjct: 10 IRLNRYLARAGVCPSRRKADELIASGQVRVNGQVAQLGMRVGPDDIVEVNGVRVVPQTQA 69 Query: 66 DLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHSK----RVFPIGRLDKDSQGLIFLTNHG 120 + I +NKP ++T +D R ++D +N +FP+GRLD+++ G++ LTN G Sbjct: 70 --LYILMNKPHDTITTCDDERGRRTVLDLINLPPEQKNGLFPVGRLDRNTTGVLLLTNDG 127 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKK--EAPFVFR 178 +L N+++ EK Y+ +P+ E + GV + + +V P Sbjct: 128 ELANRLMHPRYRVEKIYVARTARPVKPEEAEQLRRGVQLEDGPARAVQVAVNPADPHEIA 187 Query: 179 ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIEN 238 + + +G NRQ+RRM E G+EV +L+RT ++ G+ G+WR LTD E+ L++L Sbjct: 188 LMIYEGRNRQVRRMLEAIGHEVVQLKRTHYAGLTTKGVRPGKWRRLTDAEVRRLYRLAGL 247 Query: 239 SSSEV 243 + Sbjct: 248 KPPKT 252 >UniRef50_C4XEA6 Pseudouridine synthase n=1 Tax=Mycoplasma fermentans PG18 RepID=C4XEA6_MYCFE Length = 269 Score = 257 bits (657), Expect = 4e-67, Method: Composition-based stats. Identities = 79/244 (32%), Positives = 138/244 (56%), Gaps = 3/244 (1%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPRE 63 +R+ K I+++G CSRR+A+ YIE+ V +NGK +GD+ D +K+N QLI ++ Sbjct: 25 KELIRVQKLIAQTGYCSRRKAEEYIEKKLVKVNGKIVQLGDKASENDEIKINNQLISLQK 84 Query: 64 AEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDL 122 + V LNKP +ST +D R +VD +N+S+R+ P+GRLD D+ G + LTN ++ Sbjct: 85 P-NFVYFLLNKPKKTISTVKDPKGRKTVVDLINYSERIAPVGRLDYDTTGALLLTNDWEM 143 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLV 182 +NK+ + + Y V +D P++ + + ++AG+ + G +K+ V + + +TL Sbjct: 144 INKLTHPKYEILRTYRVRIDSPLSLKEFKLINAGLIVNGKFSKQI-VDQVDTKSYLVTLH 202 Query: 183 QGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSSSE 242 G I+ + + +EV L+R N+++ +P G +R LT E+ DL LI + Sbjct: 203 VGSYHHIKELFKALNHEVINLKRVSFANLTVEKMPEGSYRTLTLKEIKDLKVLISLQEKK 262 Query: 243 VKPK 246 + K Sbjct: 263 LCQK 266 >UniRef50_Q9HZ55 Ribosomal large subunit pseudouridine synthase B n=67 Tax=Gammaproteobacteria RepID=RLUB_PSEAE Length = 386 Score = 257 bits (657), Expect = 4e-67, Method: Composition-based stats. Identities = 82/301 (27%), Positives = 142/301 (47%), Gaps = 16/301 (5%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAE 65 +L K ++ G+ SRR+ + +I +G V +NG A++G +V D + V+G LI EA Sbjct: 13 GEKLQKVLARLGVGSRRDVEVWIAEGRVNVNGSVASLGQRVDSHDAITVDGHLIRREEAA 72 Query: 66 D--LVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSK--RVFPIGRLDKDSQGLIFLTNHG 120 + ++ NKP G V T +D E R I D + + R +GRLD ++ GL+ T G Sbjct: 73 ESVRRVLIYNKPEGEVCTRDDPEGRPTIFDRLPRLRTGRWINVGRLDINTTGLLLFTTDG 132 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA-----PF 175 +L N+++ + ++EY V V +TEE I + GV + K +++ Sbjct: 133 ELANRLMHPSYEMDREYAVRVRGEVTEEMIERLLNGVMLEDGPAKFSDIQQAPGGEGFNH 192 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDELIDL-- 232 + +++G NR++RR+ E G V +L+R R V L S + +G +R++ E+ L Sbjct: 193 WYHCVVMEGRNREVRRLWESQGLVVSRLKRVRFGPVFLTSELTMGRYREMDQREIDILSE 252 Query: 233 ---FKLIENSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKG 289 K + K + KA+ + RP+ + E+ R + R Sbjct: 253 EVGLKPVALPGMTTKAREKAERQQRKQARPLARSERPEAGRKRAPRREDGENAARRAPAS 312 Query: 290 R 290 R Sbjct: 313 R 313 >UniRef50_C8QZD4 Pseudouridine synthase n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QZD4_9DELT Length = 240 Score = 256 bits (656), Expect = 4e-67, Method: Composition-based stats. Identities = 70/238 (29%), Positives = 121/238 (50%), Gaps = 10/238 (4%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPG-DVVKVNGQLIEPRE 63 + RL K+++ +GI SRR+A+ YI QG V ++G+ +G + P V +GQ + P Sbjct: 2 AERLQKFLARAGIASRRKAEEYIAQGRVQVDGRPVAQMGLTIDPERQQVTFDGQPVLP-- 59 Query: 64 AEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHS-KRVFPIGRLDKDSQGLIFLTNHGD 121 + + LNKP G V+T D R + +N R+FP+GRLD D++G + LTN G+ Sbjct: 60 PSRKLTVLLNKPAGYVTTMADPQGRPIVTSLINEPGLRLFPVGRLDLDTEGALLLTNDGE 119 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKK----EAPFVF 177 L IL + Y TV E ++ + G+ + G T ++++ + Sbjct: 120 LAQNILHPSRQINRTYHATVKGRPNREALQQLRRGIMLEGRRTWPARIRELRRNQESTTL 179 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 + + +G RQ+R+M + V +L+R + L +P G +R L+ ++L LF+ Sbjct: 180 EVIIHEGRKRQVRKMFAAINHPVLQLKRVAYGGLRLGSLPTGRYRRLSPEDLQLLFRP 237 >UniRef50_D2QMI8 RNA-binding S4 domain protein n=16 Tax=Bacteroidetes RepID=D2QMI8_9SPHI Length = 638 Score = 256 bits (654), Expect = 7e-67, Method: Composition-based stats. Identities = 90/237 (37%), Positives = 138/237 (58%), Gaps = 9/237 (3%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEP 61 D + RLN++I+ SG+CSRREAD I G++ +NGK T +G +VK GD VK +++ P Sbjct: 401 NDGTTRLNRFIANSGVCSRREADELIAHGDISVNGKIVTEMGYKVKEGDTVKYGTKVLNP 460 Query: 62 REAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH--SKRVFPIGRLDKDSQGLIFLTN 118 E V + LNKP ++TTED E R +++ V R++P+GRLD+++ GL+ +TN Sbjct: 461 ---ERFVYVLLNKPKDYITTTEDPEERKTVMELVADAGKFRMYPVGRLDRNTTGLLLITN 517 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKE--APFV 176 G+L +K+ N+ K Y V +DKPIT+E + G+ + K + +V Sbjct: 518 DGELADKLTHPSNNIRKIYQVELDKPITDEHFEAIKKGIELEDGPIKPDAISIVTPDAYV 577 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF 233 I + G NR +RR+ E FGYEV KL+RT ++ +P G+WR L E++ L Sbjct: 578 VGIEIHSGRNRIVRRIFESFGYEVTKLDRTTYAGLTKKELPRGKWRFLDPKEVVKLK 634 >UniRef50_Q55578 Uncharacterized RNA pseudouridine synthase slr0361 n=21 Tax=Cyanobacteria RepID=Y361_SYNY3 Length = 249 Score = 256 bits (654), Expect = 7e-67, Method: Composition-based stats. Identities = 74/245 (30%), Positives = 124/245 (50%), Gaps = 14/245 (5%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPG-DVVKVNGQLIEPREA 64 + R+ K +S+ GI SRR A+ I G V +NGK A +GD+ P D + V+G+ I+ Sbjct: 2 AERIQKLLSQWGIASRRHAEEMILAGRVSVNGKVANLGDKADPQQDFLSVDGKQIKADNR 61 Query: 65 EDLVLIALNKPVGIVSTTEDG-ERDNIVDFVN----HSKRVFPIGRLDKDSQGLIFLTNH 119 + + +NKP ++ST +D R ++D + K + P+GRLD++S G + LTN Sbjct: 62 PRDIYLLVNKPRDVLSTCDDPRGRKTVLDLLPQDLQRGKGLHPVGRLDRNSTGALLLTND 121 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFV--- 176 G+L ++ K Y V ++ ++E + +G+ + G T ++ + Sbjct: 122 GELTLRLTHPRYHLPKTYDVWLEGNPSDEDLEKWRSGMMLDGKKTLPATLEVISENKDQI 181 Query: 177 -FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSG----IPLGEWRDLTDDELID 231 +TL +G NRQIRR+ E G V KL R I + L + G++R L+ E+ Sbjct: 182 HLLVTLTEGRNRQIRRLAEELGLTVLKLHRRTIGPLQLHTRGKVLGSGQFRFLSPAEIRL 241 Query: 232 LFKLI 236 L K + Sbjct: 242 LKKQV 246 >UniRef50_C7NDY8 Pseudouridine synthase n=5 Tax=Fusobacteriaceae RepID=C7NDY8_LEPBD Length = 228 Score = 256 bits (654), Expect = 7e-67, Method: Composition-based stats. Identities = 87/230 (37%), Positives = 131/230 (56%), Gaps = 3/230 (1%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAED 66 +RLNK+I+E+G CSRR+AD I +G V +N A IG VKP DVV+++G+ ++ Sbjct: 1 MRLNKFIAETGFCSRRKADELINEGRVTVNKHEAIIGMDVKPEDVVRIDGERVKL--NTR 58 Query: 67 LVLIALNKPVGIVSTTEDG-ERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNK 125 LNKP ++ + ED R VDF+ R+F GRLD ++GLI ++N G++ N Sbjct: 59 YEYYILNKPKRVLCSNEDKFGRRLAVDFIKSRARLFTYGRLDFMTEGLIIISNDGEVYNH 118 Query: 126 ILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQGL 185 ++ K Y+ V + I ++ I + GV I G T KVKK RI + +G Sbjct: 119 VMHPRKKLYKSYIAKVSREIEDKDIEALQHGVVIDGKRTAPAKVKKIDKKELRIAIFEGR 178 Query: 186 NRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 NRQIR+M E GY V L+R ++ ++L + +GE+R L +DE+ L L Sbjct: 179 NRQIRKMLETLGYNVNSLKRIKVGELTLGNLQVGEYRALNEDEIKYLKSL 228 >UniRef50_C7GZ55 Pseudouridine synthase n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZ55_9FIRM Length = 250 Score = 256 bits (654), Expect = 7e-67, Method: Composition-based stats. Identities = 90/252 (35%), Positives = 132/252 (52%), Gaps = 25/252 (9%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEPREAE 65 +R+NKYI++ GICSRR+AD I++G V + G G V V+ ++G+ IE + + Sbjct: 1 MRINKYIAKCGICSRRKADELIKEGRVTVGGIPLLECGVNVDEDAVIAIDGRPIEIQ--K 58 Query: 66 DLVLIALNKPVGIVSTTEDG-ERDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTNHGDLV 123 V IA+NKP G V T D R + D + +R+F IGRLDKDS+GLI LTN GDL Sbjct: 59 KTVYIAMNKPCGYVCTVSDELGRRTVYDLLTDIDERLFTIGRLDKDSEGLILLTNDGDLA 118 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTV----------------TKKC 167 K+L EK Y V V I+ +S G+ I + TK Sbjct: 119 QKLLSPKRKIEKNYEVVVRGVPGANDIKKLSGGITIDVEISQTKQNKPVKSIVKYHTKPA 178 Query: 168 KV----KKEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRD 223 K+ +K+ + + +G RQIR+M + G+EV KL+R + + L + GE+R Sbjct: 179 KIFEIGQKQGDMKLSMIIKEGKKRQIRKMFDVIGHEVIKLKRVKFAGIELGDLRPGEFRH 238 Query: 224 LTDDELIDLFKL 235 L++DE+ L L Sbjct: 239 LSEDEVRSLCSL 250 >UniRef50_C4FUC8 Pseudouridine synthase n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FUC8_9FIRM Length = 243 Score = 256 bits (654), Expect = 8e-67, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 120/238 (50%), Gaps = 15/238 (6%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIG-DQVKPG-DVVKVNGQLIEPREA 64 +R+ KY++++G SR++ + + Q V +N + + G QV PG D V V GQL+ Sbjct: 1 MRIEKYLADTGWGSRKDIKQLLAQKIVTINDQVCSKGGTQVTPGSDCVAVGGQLVP---Y 57 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKR---VFPIGRLDKDSQGLIFLTNHGD 121 + LNKP GI+S TED ++D++ + +FP+GRLD D+ GL+ LTN+G Sbjct: 58 QRYHYYLLNKPEGILSATEDRHHQTVIDWLGEGYQHLDLFPVGRLDIDTTGLLLLTNNGQ 117 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA------PF 175 L +++L +K Y T+ + + I AG+ + + ++ + Sbjct: 118 LAHQLLSPKKKVDKTYTATIRGLVDQADIAAFEAGLDLGDFTSLPAELTVLSQDVDQGTS 177 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDL 232 ++ + +G Q++RM + G EV L R + + L + G+WR LT+ E L Sbjct: 178 QIQVIIQEGKFHQVKRMFQAVGKEVLSLHRLAMGPLRLESDLAHGQWRSLTEQEAQAL 235 >UniRef50_C6X4T2 Pseudouridine synthase n=2 Tax=Flavobacteriaceae RepID=C6X4T2_FLAB3 Length = 371 Score = 256 bits (654), Expect = 8e-67, Method: Composition-based stats. Identities = 90/241 (37%), Positives = 135/241 (56%), Gaps = 10/241 (4%) Query: 2 LPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIE 60 +P ++RLNKYI+ SGICSRREAD I QG V +NG T +G QV+ D V +GQ I Sbjct: 134 VPKETIRLNKYIANSGICSRREADELITQGLVQVNGAVVTEMGYQVQKTDKVIFDGQGIT 193 Query: 61 PREAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH--SKRVFPIGRLDKDSQGLIFLT 117 P E V + LNKP G +STT+D + R ++D V + RVFP+GRLD+ + G+I LT Sbjct: 194 P---EKPVYVLLNKPKGYISTTKDEKARKTVMDLVANASPYRVFPVGRLDRSTTGVILLT 250 Query: 118 NHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVT---KKCKVKKEAP 174 N G + K+ + +K Y VT+D+ + + ++ GV + V ++ + Sbjct: 251 NDGHMTKKLTHPSFNMKKIYHVTLDRKLDRADLNAIAEGVRLEEGVAEVDSISYIEGKPK 310 Query: 175 FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFK 234 I + G NR +RR+ + GYEV+ L+R ++ I G WR LT+ E+ +L Sbjct: 311 NEVGIEIHIGWNRVVRRIFQRLGYEVEALDRVMFAGLTKKNIKRGHWRILTELEVNNLKM 370 Query: 235 L 235 + Sbjct: 371 M 371 >UniRef50_Q01SF5 Pseudouridine synthase n=3 Tax=Bacteria RepID=Q01SF5_SOLUE Length = 249 Score = 256 bits (654), Expect = 8e-67, Method: Composition-based stats. Identities = 89/249 (35%), Positives = 144/249 (57%), Gaps = 9/249 (3%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEPR 62 + RL K +S++G+ SRR+A++ +++G V +NG T +G + D +KV+G+L++ Sbjct: 2 AEERLQKILSQAGVSSRRQAEKLMQEGRVTVNGSVITELGSKADLDRDHIKVDGRLLKAP 61 Query: 63 EAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTNHG 120 + + + IALNKP G V+T D E R+ ++D ++ +RV+P+GRLD S+GL+ LTN G Sbjct: 62 KHQ--IYIALNKPKGTVTTVHDPEGRETVMDLLHRVKERVYPVGRLDYHSEGLLLLTNDG 119 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA---PFVF 177 +L N I+ A EK Y+V V +T E GVP+ G T +K + + Sbjct: 120 ELANSIMSAATHLEKTYVVKVTGTLTAEQEEKFRTGVPLSGRRTLPAGLKLLSRAENPWY 179 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIE 237 + L +G N QIR M HFG V+KL+R RI + L + G +R L ++++ L + I+ Sbjct: 180 EVKLTEGRNNQIRMMFRHFGKLVEKLKRVRIGPIELGTLKTGAFRYLDEEDVAKLKRAIQ 239 Query: 238 NSSSEVKPK 246 SS + K Sbjct: 240 RSSQKPAKK 248 >UniRef50_B1C6T1 Pseudouridine synthase n=2 Tax=Clostridiales RepID=B1C6T1_9FIRM Length = 238 Score = 256 bits (654), Expect = 9e-67, Method: Composition-based stats. Identities = 82/239 (34%), Positives = 131/239 (54%), Gaps = 10/239 (4%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVK-PGDVVKVNGQLIEP 61 + +R+NKY++ G+ SRR+ + I +G V +NG+ +G + D+VKV G+ + Sbjct: 2 EEKMRINKYLASCGVASRRKCEEIISRGKVTVNGEVVRELGTIINVEKDLVKVYGKEVSL 61 Query: 62 REAEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHSK-RVFPIGRLDKDSQGLIFLTNH 119 V LNKP G++S ++ + +VD + + R+FP+GRLDKD+ GLI LTN Sbjct: 62 DT--KKVYYMLNKPQGVISASKSKYGEETVVDLLGKKEHRLFPVGRLDKDTTGLIILTND 119 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA----PF 175 GD K+ + EK Y V + + + + GV I G T + KV+ Sbjct: 120 GDFAYKLTHPKYEKEKTYEALVKGKVDSKSLDKLKQGVVIDGKKTSRAKVRLVKMIGVNS 179 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFK 234 + ITL++G RQ+++MCE G++V KL RT +SL + +GE+R LT +E+ L K Sbjct: 180 LVEITLIEGRKRQVKKMCEKVGHKVIKLNRTMENGLSLGDLEIGEYRKLTKNEVSKLLK 238 >UniRef50_C0QWY7 Pseudouridine synthase n=2 Tax=Brachyspira RepID=C0QWY7_BRAHW Length = 229 Score = 255 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 87/230 (37%), Positives = 127/230 (55%), Gaps = 6/230 (2%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREAE 65 +RLNKYI+ + SRREADR I+ GNV +NG T QV D ++ + + + E Sbjct: 1 MRLNKYIASLNLASRREADRLIQNGNVKVNGIINTNPATQVDENDKIECSIE----QYKE 56 Query: 66 DLVLIALNKPVGIVSTTEDGERDNIVDFVN-HSKRVFPIGRLDKDSQGLIFLTNHGDLVN 124 + + I LNKP G V ++ E I + + ++P+GRLDKDS GLI TN G Sbjct: 57 NKIYIKLNKPRGYVVSSNKNEGKPIYNLIKKDFDNIYPVGRLDKDSSGLILFTNDGVFAK 116 Query: 125 KILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQG 184 +I+ + EKEY V VD I + ++ + G+ + G K KVK+ F I L +G Sbjct: 117 QIIGENTNCEKEYYVRVDDNIPDGALQKLEYGISLDGQKLKPAKVKRVNKNSFHIILTEG 176 Query: 185 LNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFK 234 NRQIRRMC+ G+EV L+R RI + L + G ++ LT +E+ + K Sbjct: 177 KNRQIRRMCQKVGFEVIILKRLRISGILLEDLKEGTFKSLTKEEIESILK 226 >UniRef50_C8NNL7 Pseudouridine synthase n=8 Tax=Corynebacterium RepID=C8NNL7_COREF Length = 329 Score = 255 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 79/245 (32%), Positives = 126/245 (51%), Gaps = 13/245 (5%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEPR 62 +RL K ++++G+ SRR A+ I+ G V +NG+ T G +V P DV++V+G I Sbjct: 87 EGIRLQKVLAQAGVASRRHAEILIDNGRVEVNGRIVTTQGTRVNPNSDVIRVDGVRINI- 145 Query: 63 EAEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHS----KRVFPIGRLDKDSQGLIFLT 117 EDL LNKP G+ ST D R + D V+ +R+F +GRLD D++GL+ LT Sbjct: 146 -NEDLEYFVLNKPRGMHSTMSDDLGRPCVGDLVSEKTASGQRLFHVGRLDADTEGLLLLT 204 Query: 118 NHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA---- 173 N G+L N+++ + K YL TV + + G+ + K V+ Sbjct: 205 NDGELANRLMHPKYEVRKTYLATVRGEAGPNLVTTLRKGIELEDGPAKADYVQIIDTFQG 264 Query: 174 PFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF 233 + R+ + +G +RRM + G+ V++L RT++ V L G R L EL L+ Sbjct: 265 KSLIRLEIHEGRKHIVRRMLDEAGFPVERLVRTKLHTVQLGEQKPGSLRALNASELASLY 324 Query: 234 KLIEN 238 K++E Sbjct: 325 KVVEL 329 >UniRef50_C4ZJR2 Pseudouridine synthase n=2 Tax=Betaproteobacteria RepID=C4ZJR2_THASP Length = 379 Score = 255 bits (652), Expect = 1e-66, Method: Composition-based stats. Identities = 79/273 (28%), Positives = 142/273 (52%), Gaps = 17/273 (6%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREA 64 RL K ++++G+ SRRE + ++ G + +NG A++G ++ PGD VKVNG+L+ R Sbjct: 115 EPERLQKVLAQAGVASRREIEEWVVAGRISVNGLPASLGQKIGPGDRVKVNGKLVPLRFT 174 Query: 65 ED-LVLIALNKPVGIVSTTEDGE-RDNIVDFVN--HSKRVFPIGRLDKDSQGLIFLTNHG 120 + ++ +KP G + + +D E R + + + R +GRLD ++ GL+ TN G Sbjct: 175 QRSPRVLIYHKPEGEIVSRDDPEGRPTVFERLPILRKGRWLAVGRLDFNTSGLLLFTNDG 234 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA----PFV 176 DL NK++ + E+EY V + +TEE ++ ++ G+ + K ++ E Sbjct: 235 DLANKLMHPRYELEREYAVRILGELTEEQVKSLTDGIQLEDGPAKFNLLRDEGGEGANHW 294 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDELIDLFKL 235 +R+T+ +G NR++RRM E G V +L R R +V L + + G W ++ + E L Sbjct: 295 YRVTISEGRNREVRRMFEAVGLTVSRLMRVRYGSVELPARLKRGMWMEMPEAEACAL--- 351 Query: 236 IENSSSEVKPKAKAKPKTAGIKRPVVKMEKTAE 268 + + P +++ + KRPV A Sbjct: 352 -----AGLPPPQQSRQQDLRDKRPVKLHRTQAR 379 >UniRef50_A9NFY3 Pseudouridine synthase n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NFY3_ACHLI Length = 236 Score = 255 bits (652), Expect = 1e-66, Method: Composition-based stats. Identities = 113/232 (48%), Positives = 151/232 (65%), Gaps = 8/232 (3%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAED 66 +RLN YIS++G+ SRR AD IE G + +NG A +G Q+ DVV ++ +IEP E+ Sbjct: 1 MRLNLYISKTGVASRRGADSLIEHGRIKVNGVTAVLGMQITKNDVVTLDNNIIEPL--EE 58 Query: 67 LVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNKI 126 I LNKPVGIVSTT N++ F+N +++FP+GRLDKDS GLI LTN G +VNKI Sbjct: 59 KFYILLNKPVGIVSTTNTAISGNMITFMNFKEKIFPVGRLDKDSHGLILLTNDGSIVNKI 118 Query: 127 LRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI------LGTVTKKCKVKKEAPFVFRIT 180 LR N H+KEY VT++KP + FI M++GV I +T +K F +T Sbjct: 119 LRVENGHDKEYHVTLNKPYDDYFIETMTSGVEIYNPVAHEKQMTMPSILKPLDERTFSLT 178 Query: 181 LVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDL 232 + QGLNRQIRRM + GY V+ LER RIM+++L +P+G WR LT DEL +L Sbjct: 179 IRQGLNRQIRRMADSLGYRVESLERVRIMHLTLGDLPVGYWRYLTSDELKEL 230 >UniRef50_C8WAL4 Pseudouridine synthase n=7 Tax=Coriobacteriaceae RepID=C8WAL4_ATOPD Length = 279 Score = 254 bits (650), Expect = 2e-66, Method: Composition-based stats. Identities = 70/268 (26%), Positives = 120/268 (44%), Gaps = 29/268 (10%) Query: 1 MLPDS--SVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQ 57 M + +RL ++++ +G+ SRR ++R + G V +NG+ T +G +V P V Sbjct: 1 MTEERIVPMRLQRFLARAGVASRRGSERLMTSGRVTVNGQVVTELGSKVDPLVD-VVAVD 59 Query: 58 LIEPREAEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNH--SKRVFPIGRLDKDSQGLI 114 + AE V + LNKP G ++T +D R IVD V +FP+GRLD D+ GL+ Sbjct: 60 GVVCSIAEKPVYLMLNKPAGYLTTMKDPQGRPTIVDMVPTDTYPGLFPVGRLDMDTTGLL 119 Query: 115 FLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA- 173 F T G + ++L K Y+ V TEE + + G+ + +V+ + Sbjct: 120 FFTTDGQMAQELLHPSKHVWKHYVAHVVGTPTEEQLNRLREGIELEDGPAAPAEVEIISD 179 Query: 174 ---------------------PFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVS 212 + +T+ +G Q+++M + V L R + Sbjct: 180 DVKMKNLLAPQGLGKTGGGEPNALVSVTIREGRKHQVKKMLLAIHHRVLALHRDTFGPLH 239 Query: 213 LSGIPLGEWRDLTDDELIDLFKLIENSS 240 L+ + GEWR LT++E+ L + I Sbjct: 240 LTRVKEGEWRLLTEEEVTALERTIGREP 267 >UniRef50_Q1D5Q2 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q1D5Q2_MYXXD Length = 745 Score = 254 bits (650), Expect = 2e-66, Method: Composition-based stats. Identities = 76/264 (28%), Positives = 128/264 (48%), Gaps = 10/264 (3%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEPR 62 ++ RL KY++ +G+ SRR A+ I G V +N K T +G +V+PG D+V V+G L+ P Sbjct: 2 AAERLQKYLARAGVASRRHAEELITAGRVAVNNKTVTELGSRVEPGTDLVTVDGTLVTP- 60 Query: 63 EAEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHS-KRVFPIGRLDKDSQGLIFLTNHG 120 ++ L KPVG+V+T D R + ++V + KR+FP+GRLD D++G + T+ G Sbjct: 61 -PDESSYFLLYKPVGVVTTLSDPQGRPTVANYVEETGKRLFPVGRLDYDAEGALLFTDDG 119 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKK----EAPFV 176 L +K+ + YL V + + GV + + V E Sbjct: 120 ALAHKLTHPSFQVPRTYLAKVKGAPDTATLDKLRGGVRLEDGMATPVSVSVFEAAERNTW 179 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLI 236 +I + +G I+R+C G+ V +L R V + G+ GE R L E+ L + Sbjct: 180 LKIVVAEGRPHLIKRLCAAVGHPVVRLFRPSYAGVGVEGLRPGELRPLKTSEVELLNAVS 239 Query: 237 ENSSSEVKPKAKAKPKTAGIKRPV 260 + ++ + + P+ G P Sbjct: 240 DGKAAPPTGELRLPPRRHGRAAPG 263 >UniRef50_A9KNY1 Pseudouridine synthase n=3 Tax=Firmicutes RepID=A9KNY1_CLOPH Length = 240 Score = 254 bits (650), Expect = 2e-66, Method: Composition-based stats. Identities = 74/237 (31%), Positives = 132/237 (55%), Gaps = 9/237 (3%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIG-DQVKPG-DVVKVNGQLIEP 61 +S +RL+KY+++ + +R E + I +G V +NG T +V D + V+ + + Sbjct: 5 NSMLRLDKYLADLSVGTRTEVKQMIRKGRVMVNGNTETSPETKVDSNHDKIFVDSRELSY 64 Query: 62 REAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKR--VFPIGRLDKDSQGLIFLTNH 119 E LNKP G+VS + D ++ +VD ++ +KR +FP+GRLDKD++GL+ +TN Sbjct: 65 VTLE---YFMLNKPAGVVSASNDKKQTTVVDLIDEAKRKDLFPVGRLDKDTEGLLIITND 121 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTK-KCKVKKEAPFVFR 178 GDL +++L +K Y + P+ +E +AG+ I T K+++ + Sbjct: 122 GDLAHQLLSPKKHVDKVYFAKLRDPLKKEDEEAFAAGLKIDEEFTALPAKLERISEQEAY 181 Query: 179 ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSG-IPLGEWRDLTDDELIDLFK 234 +T+ +G QI+RM E EV L+R + ++ L + LGE+R+LT++E+ L + Sbjct: 182 VTIREGKFHQIKRMFEATRNEVIYLKRISMGSLVLDESLSLGEYRELTEEEIEALRE 238 >UniRef50_A1ZI67 Pseudouridine synthase n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZI67_9SPHI Length = 391 Score = 254 bits (649), Expect = 3e-66, Method: Composition-based stats. Identities = 85/240 (35%), Positives = 138/240 (57%), Gaps = 9/240 (3%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEP 61 +RLN++IS SG+CSRREAD+ IE G + +NGK T +G QV P D VK +L++ Sbjct: 155 EPEKMRLNRFISNSGVCSRREADKLIEMGMISVNGKVITEMGFQVSPTDTVKYGKRLLKR 214 Query: 62 REAEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHS--KRVFPIGRLDKDSQGLIFLTN 118 E V + LNKP ++TT D +R ++D + +S +R++P+GRLD+++ GL+ TN Sbjct: 215 ---EKFVYVLLNKPKDFITTTNDPQDRKTVMDLIKNSCDERIYPVGRLDRNTTGLLLFTN 271 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAP--FV 176 G++ K+ +D +K Y V +DKP+ +E + ++ GV + ++ P + Sbjct: 272 DGEVAKKLSHPSHDVKKVYQVELDKPLKDEDLDSIAEGVILEDGYAAVDEIAILNPERTL 331 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLI 236 + + G NR +RR+ H YEV KL+RT ++ I G+WR L++ E+I L Sbjct: 332 VGVEIHIGRNRIVRRIFNHLDYEVVKLDRTMYAGLNKKNIDRGDWRYLSEKEVIRLKYFA 391 >UniRef50_A4CJ52 Pseudouridine synthase n=5 Tax=cellular organisms RepID=A4CJ52_9FLAO Length = 303 Score = 254 bits (649), Expect = 3e-66, Method: Composition-based stats. Identities = 82/234 (35%), Positives = 131/234 (55%), Gaps = 10/234 (4%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREAE 65 +RLNKYI+ +GICSRREAD YI GNV +NGK T +G +V+P D V+ +G+L++ E Sbjct: 70 IRLNKYIANAGICSRREADTYIAAGNVTVNGKTITEMGYKVQPTDEVRFDGRLLQR---E 126 Query: 66 DLVLIALNKPVGIVSTTEDG-ERDNIVDFVNH--SKRVFPIGRLDKDSQGLIFLTNHGDL 122 + LNKP ++TT D R +++ ++ + R+ P+GRLD+++ GL+ TN G+L Sbjct: 127 RKEYVLLNKPRNFITTTRDEKGRRTVMELISRASNARLVPVGRLDRNTTGLLLFTNDGEL 186 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA---PFVFRI 179 K+ + K Y V +DK + + G+ + + + + Sbjct: 187 AKKLTHPKHGVRKIYHVELDKTFKSADLGKLREGLELEDGRIEVDEASYIDGASKKEVGV 246 Query: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF 233 L G NR +RR+ EH GY+V KL+R + ++ +P G WR LT+ E+I+L Sbjct: 247 ELHSGRNRIVRRIFEHLGYQVVKLDRVVLAGLTKKDLPRGHWRHLTEQEVINLR 300 >UniRef50_Q31GA0 Pseudouridine synthase n=2 Tax=Gammaproteobacteria RepID=Q31GA0_THICR Length = 317 Score = 254 bits (649), Expect = 3e-66, Method: Composition-based stats. Identities = 86/300 (28%), Positives = 147/300 (49%), Gaps = 17/300 (5%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIE--PR 62 + +L K ++ G SRRE ++ I QG V +NGK AT+GD+ P D +KVN QL++ Sbjct: 16 AGEKLQKILARGGFGSRREVEKLISQGLVKVNGKVATLGDRAFPTDTLKVNDQLVKETRL 75 Query: 63 EAEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNH--SKRVFPIGRLDKDSQGLIFLTNH 119 E + +I NKP G V + +D R+ I + + R +GRLD ++ GL+ LTN+ Sbjct: 76 EKQPTQVILYNKPEGQVCSRKDEKGRETIFTSLPRIINSRWISVGRLDINTSGLLILTNN 135 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTK-------KCKVKKE 172 G+L N+++ + E+EY V V +++E + + GV + K + + Sbjct: 136 GELANRLMHPSYEMEREYSVRVFGEVSDEILDRLKKGVKLEDGFAKFESIGKIPQQEEDS 195 Query: 173 APFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELID 231 +R+ + +G NR++RR+ E G +V +L RTR SL + G+ LT ++ Sbjct: 196 INQWYRVVIKEGRNREVRRIWESQGVQVSRLVRTRYGQFSLPRNLRRGKSEPLTWKQINQ 255 Query: 232 LFKLIENSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEK-GGRPASNGKRFTSPGRKKKGR 290 L K ++ +P+ + A K+ + + +K GR K K K + Sbjct: 256 LLKSVDLPE---EPRPDLRNNPAKAKKMAARHAEPFKKETGRVKYKEKGENHREEKSKPK 312 >UniRef50_Q31H34 Pseudouridine synthase n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31H34_THICR Length = 261 Score = 254 bits (649), Expect = 3e-66, Method: Composition-based stats. Identities = 102/234 (43%), Positives = 150/234 (64%), Gaps = 2/234 (0%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREA 64 SS+RLNK IS++G+ S+++AD +I Q V +NG+ A++G +V D V ++G+ + + Sbjct: 30 SSMRLNKLISQAGLGSKKQADAWIMQNRVTVNGQVASVGQKVNQHDQVLLDGRPVA--WS 87 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVN 124 +++L+A +KPVG+V T + +N+V + +GRLDK S+GL+ LTN GDL N Sbjct: 88 SEVLLMAYHKPVGVVCTHDLSVANNLVVSTGLMQHFSAMGRLDKASEGLMILTNQGDLTN 147 Query: 125 KILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQG 184 IL+ G HEKEY V VD+P+TE F+ M GV I+G VT+ C+++ FRI L QG Sbjct: 148 HILQPGFAHEKEYWVEVDQPLTEYFLTNMQQGVEIMGQVTRPCEIEATGEHCFRIVLTQG 207 Query: 185 LNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIEN 238 LN+QIRRMC+ GY V +L+R RI V L +P+ R+L D E L +LI Sbjct: 208 LNKQIRRMCKSLGYRVLRLQRVRIAQVWLDDLPVNTLRELNDVEKSGLQRLIPR 261 >UniRef50_C8PSZ6 Ribosomal large subunit pseudouridine synthase B n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PSZ6_9SPIO Length = 252 Score = 253 bits (648), Expect = 4e-66, Method: Composition-based stats. Identities = 81/240 (33%), Positives = 118/240 (49%), Gaps = 6/240 (2%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREA 64 +RL Y++ +G+ SRR ++ IE+G V +NG T +G +V GD V +G+ + P Sbjct: 14 EMRLQVYLAHAGVASRRACEKIIEEGRVSVNGTVVTGMGSKVCAGDTVLFDGKPVHPE-- 71 Query: 65 EDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHS--KRVFPIGRLDKDSQGLIFLTNHGD 121 + LNKP G V T D R D + + +R++ IGRLD S G I TN GD Sbjct: 72 ARKCYVLLNKPAGFVCTLSDEKGRPTAADLLKEAYSERLYNIGRLDMFSSGAILFTNDGD 131 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITL 181 KI EKEY++ + E + G+ + G K RI L Sbjct: 132 FAAKIEHPSAQIEKEYVIETTQDFPPELLTRFERGIRVDGIFYKCRSAAAVNRRKLRIVL 191 Query: 182 VQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSSS 241 V+G NR+IRR+ + F +K+L R RI N+ L + GE+RDLT E L L + + Sbjct: 192 VEGKNREIRRVLDSFNCTIKRLVRVRIGNLELGTLKAGEFRDLTVQERQALLGLAAQNDN 251 >UniRef50_C1ZE67 Pseudouridine synthase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZE67_PLALI Length = 554 Score = 253 bits (648), Expect = 4e-66, Method: Composition-based stats. Identities = 77/298 (25%), Positives = 131/298 (43%), Gaps = 16/298 (5%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVK-PGDVVKVNGQLIEPR 62 + RL K ++ +G SRR + YIE G V ++G A +G +V V V+G+ + Sbjct: 35 AGERLQKVLASAGYGSRRACEEYIEMGRVTIDGVVAKELGVRVDLSRQKVAVDGEKLRV- 93 Query: 63 EAEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHSK-RVFPIGRLDKDSQGLIFLTNHG 120 E+ +KP G++ T D R ++D + R+F +GRLD ++GL+ +TN G Sbjct: 94 --EEKRYFLFHKPAGVLCTNSDPAGRTRVIDCFPPNVGRLFTVGRLDDGTEGLLIVTNDG 151 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKV----KKEAPFV 176 DL ++ + Y V + E I + G+ + V + + V Sbjct: 152 DLAERLTHPKFGIPRIYRAVVAGNPSTEAINQLLEGLYFAEGRFRMSSVNRVKSQGSATV 211 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLI 236 IT+ +G NR+IRR+ G++V KL+RT + L + G R L+++EL L +I Sbjct: 212 LEITMREGQNREIRRLLARVGHKVMKLKRTHFGPIKLGDLERGAHRKLSEEELSKLQDVI 271 Query: 237 ENSSSEVKPKAKAKPKTAGIKRPVVK-----MEKTAEKGGRPASNGKRFTSPGRKKKG 289 E P+ + + AG + G P + +R P + Sbjct: 272 TGKWKEPAPRKPQRTRDAGKATSAGGVTRASSSRAGSAGATPRARLERTALPATGLEP 329 >UniRef50_Q7UUP0 Pseudouridine synthase n=1 Tax=Rhodopirellula baltica RepID=Q7UUP0_RHOBA Length = 395 Score = 253 bits (648), Expect = 4e-66, Method: Composition-based stats. Identities = 93/290 (32%), Positives = 143/290 (49%), Gaps = 12/290 (4%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEPREAE 65 R+N+ ++ +G SRR+ + I +G V ++G+ T +G V P V+V+G + Sbjct: 26 RINQLLASAGFGSRRQCEELIREGRVDVDGETITELGTTVDPDLQKVRVDGN---YLRPQ 82 Query: 66 DLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVN 124 LV +NKPVGIV+T D R ++D V ++RVFP+GRLD S+GLI LTN GDL Sbjct: 83 KLVYYVVNKPVGIVTTNRDPRGRPRVIDLVPPTERVFPVGRLDISSEGLILLTNDGDLAQ 142 Query: 125 KILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAP----FVFRIT 180 K+ +K Y V V + E ++ M G+ I + + K I Sbjct: 143 KLAHPKFGIQKVYRVVVAGEVRGETMKKMREGIYIAEGLVQVDGAKIIKARTKATEMEIR 202 Query: 181 LVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSS 240 L +G NR+IRR+ FG++V++L R I + L +P G +R LT DE+ L + I+ + Sbjct: 203 LKEGKNREIRRILARFGHKVQQLRRVAIGPLKLGDVPRGAYRKLTRDEVDKLRRSIDAAE 262 Query: 241 SEVKPKAKAKPKTAGI--KRPVVKMEKTAEKGGRPASNGKRFTSPGRKKK 288 K A+P + +RP A KG K +K + Sbjct: 263 KAAKTAPPARPASKQSIKRRPGGASRNVAAKGTGGRPAFKGGRKAVKKSR 312 >UniRef50_A4QE19 Pseudouridine synthase n=13 Tax=Corynebacterineae RepID=A4QE19_CORGB Length = 320 Score = 253 bits (647), Expect = 5e-66, Method: Composition-based stats. Identities = 80/247 (32%), Positives = 127/247 (51%), Gaps = 13/247 (5%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIE 60 VRL K ++++G+ SRR A+ I+QG V +N + T G +V P DV++V+G I Sbjct: 76 DSDGVRLQKVLAQAGVASRRHAEILIDQGRVEVNDRIVTTQGVRVNPNNDVIRVDGVRIH 135 Query: 61 PREAEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHS----KRVFPIGRLDKDSQGLIF 115 EDL LNKP G+ ST D R + D V+ +R+F +GRLD D++GL+ Sbjct: 136 I--NEDLEYFVLNKPRGMHSTMSDELGRPCVGDLVSEKTASGQRLFHVGRLDADTEGLLL 193 Query: 116 LTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA-- 173 LTN G+L N+++ + K YL TV T + + + GV + K + Sbjct: 194 LTNDGELANRLMHPKYEVSKTYLATVRGEATNKLVSALRDGVELEDGPAKADFAQIIDVF 253 Query: 174 --PFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELID 231 + RI + +G +RR+ + G+ V++L RT++ V L G R L EL Sbjct: 254 QGKSLLRIEIHEGRKHIVRRLFDELGFPVERLVRTKLHTVQLGDQKPGSLRALNSSELTS 313 Query: 232 LFKLIEN 238 L+K+++ Sbjct: 314 LYKVVQL 320 >UniRef50_A0JV58 Pseudouridine synthase n=37 Tax=Actinobacteridae RepID=A0JV58_ARTS2 Length = 406 Score = 253 bits (647), Expect = 5e-66, Method: Composition-based stats. Identities = 78/247 (31%), Positives = 123/247 (49%), Gaps = 11/247 (4%) Query: 1 MLPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQL 58 M +RL K ++ +G+ SRR + I +G V ++GK T +G +V P V+ V+G Sbjct: 162 MHDADGIRLQKVMASAGVASRRVCEEMISEGRVEVDGKVVTELGVRVDPKTAVIHVDGLR 221 Query: 59 IEPREAEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVN--HSKRVFPIGRLDKDSQGLIF 115 I+ E++V + NKP G+VST ED R I DFV H +R+F +GRLD ++GL+ Sbjct: 222 IQLD--ENMVYMVFNKPKGVVSTMEDPDGRPCISDFVRNTHGERLFHVGRLDVATEGLLL 279 Query: 116 LTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPF 175 LTN G+L N++ + K YLV V P + + AGV + + K Sbjct: 280 LTNDGELANRLTHPSYEVPKTYLVQVRGPFPQGIGAQLKAGVELEDGMASVDSFKLVDST 339 Query: 176 ----VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELID 231 + + L G NR +RR+ + G+ V +L R ++ + L G R+L E+ Sbjct: 340 PGHVLIEVVLHSGKNRIVRRLFDAVGFPVLRLVRVKVGPIGLGDQRQGSIRNLGKQEVGH 399 Query: 232 LFKLIEN 238 L + Sbjct: 400 LLASVGL 406 >UniRef50_Q11YT0 Pseudouridine synthase n=9 Tax=Bacteroidetes RepID=Q11YT0_CYTH3 Length = 562 Score = 253 bits (647), Expect = 6e-66, Method: Composition-based stats. Identities = 91/235 (38%), Positives = 134/235 (57%), Gaps = 10/235 (4%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREA 64 +RLNKYIS SGICSRREAD+ I +G V +NG T +G +VKPGD VK N +++ P Sbjct: 328 EIRLNKYISNSGICSRREADQLIIEGTVKVNGIVVTELGYKVKPGDSVKYNNKVLNP--- 384 Query: 65 EDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNH--SKRVFPIGRLDKDSQGLIFLTNHGD 121 E V + LNKP ++T ED +R ++ V + +R++P+GRLD+++ GL+ TN G+ Sbjct: 385 EKSVYVLLNKPKDFITTMEDENDRKTVMQLVANATKERIYPVGRLDRNTTGLLLFTNDGE 444 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAG-VPILGTVTKKCKVKKEAPFV--FR 178 L K+ N +K Y V +DKPIT E + G + + K + +P Sbjct: 445 LAQKLTHPSNKVKKIYEVELDKPITAEDFDKIVDGKIHLFDGPVKVDEAAIISPSKKIIG 504 Query: 179 ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF 233 I + +G NR +RR+ E GY+V KL+R ++ IP G WR LT E+ + Sbjct: 505 IEIHEGRNRIVRRIFESLGYDVLKLDRVMYAGLTKKNIPRGSWRYLTATEVNKIK 559 >UniRef50_B0S1L0 Pseudouridine synthase n=2 Tax=Finegoldia magna RepID=B0S1L0_FINM2 Length = 242 Score = 253 bits (647), Expect = 6e-66, Method: Composition-based stats. Identities = 82/234 (35%), Positives = 130/234 (55%), Gaps = 9/234 (3%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEPREAE 65 +R+NK+I++SG CSRR AD I+ V++NG + QV D+V+V G+ I + E Sbjct: 1 MRINKFIAQSGYCSRRNADELIKNSKVYVNGTILLDLSYQVNDTDIVEVEGKKINLK--E 58 Query: 66 DLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVN 124 D + IA+NKP+G ST +D +VD + RV+P+GRLDKDS GL+ LTN G+ Sbjct: 59 DKIYIAINKPIGYASTVKDKFADKKVVDLIKSDTRVYPVGRLDKDSHGLLILTNDGEFTY 118 Query: 125 KILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAP----FVFRIT 180 ++ +H+K Y V V + I+ + G+ + G KK K++ +R+T Sbjct: 119 ELTHPKFEHKKIYEVLVKGKPNKTEIKQLKDGILLDGYKLKKSKIEFIENVKNDTKYRVT 178 Query: 181 LVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSG-IPLGEWRDLTDDELIDLF 233 + +G NRQIRRM + + V L+R +I N + + GE++ L +L + Sbjct: 179 IFEGRNRQIRRMFDFINHPVLDLKRVQIGNYKMENSLKSGEYKLLKSKDLDLIR 232 >UniRef50_C8WGQ8 Pseudouridine synthase n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WGQ8_EGGLE Length = 282 Score = 253 bits (646), Expect = 6e-66, Method: Composition-based stats. Identities = 75/275 (27%), Positives = 121/275 (44%), Gaps = 42/275 (15%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEPRE 63 +RL K+++ +G SRR ++ + G V +NGK T +G +V P D V V+G ++ R Sbjct: 10 PMRLQKFLARAGAASRRGSENLMTAGRVTVNGKVVTELGSKVDPLVDEVAVDGAVV--RL 67 Query: 64 AEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVN--HSKRVFPIGRLDKDSQGLIFLTNHG 120 A+ V I L+KP G V+T D R + + V +FPIGRLD D+ GL+ + G Sbjct: 68 ADGPVTIMLHKPAGFVTTMSDPQGRRTVAELVPTERYPGLFPIGRLDFDTTGLLLFSTDG 127 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA------- 173 +L N +L + K YL V+ TE + + G+ + T+ V+ Sbjct: 128 ELGNGLLHPKHHVTKRYLACVEGRPTERDLALLRRGIELDDGPTQPADVRVVEGGAARHA 187 Query: 174 ----------------------------PFVFRITLVQGLNRQIRRMCEHFGYEVKKLER 205 + R+ + +G RQ++RM G+ V L R Sbjct: 188 ERLLEIPAAVPPRSSKEYAAVCEGRATRRSIVRLGIREGRKRQVKRMLAAVGHPVLALHR 247 Query: 206 TRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSS 240 + L +P G WR L +E+ L + I + Sbjct: 248 DSFGPLELGDLPRGAWRALDAEEVAALHQAIGRAE 282 >UniRef50_B9MRL6 Pseudouridine synthase n=2 Tax=Clostridia RepID=B9MRL6_ANATD Length = 233 Score = 253 bits (646), Expect = 6e-66, Method: Composition-based stats. Identities = 61/229 (26%), Positives = 120/229 (52%), Gaps = 10/229 (4%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGK-RATIGDQVKPG-DVVKVNGQLIEPREA 64 +RL+K+++ G SR + + I +G V +NGK + ++ P D+++V+G++ + Sbjct: 1 MRLDKFLTHCGFGSRSQVKKLIREGIVTVNGKQIVEVDFKINPEEDIIEVDGRV---AKF 57 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNH---SKRVFPIGRLDKDSQGLIFLTNHGD 121 + I +NKP G V + E+ + ++ + + +GRLDKD++GL+ +T+ G+ Sbjct: 58 SKQIYIMMNKPKGYVCSNEELASLTVFSLISDDLKYRDLHTVGRLDKDAEGLLIITDDGE 117 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGT-VTKKCKVKKEAPFVFRIT 180 ++++ EKEYLV ++K + EE + G+ + T K ++ Sbjct: 118 YTHRVISPKKRIEKEYLVRLEKEVDEEKLNEFENGIILDDGYKTLPAKYTIIDSTTVKLC 177 Query: 181 LVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDE 228 + +G Q++RM E G +V L+R RI ++L + GE+R + +E Sbjct: 178 IYEGKYHQVKRMFEAIGNKVVDLKRLRIGGLNLDQSLKPGEYRVMKVEE 226 >UniRef50_C1F236 Pseudouridine synthase n=8 Tax=Bacteria RepID=C1F236_ACIC5 Length = 406 Score = 253 bits (646), Expect = 7e-66, Method: Composition-based stats. Identities = 91/283 (32%), Positives = 144/283 (50%), Gaps = 21/283 (7%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKP-GDVVKVNGQLIE 60 P RL K ++ +G+ SRR+A+ I G V +NG+ T +G + D ++V+G+L++ Sbjct: 20 PRGGERLQKILASAGVASRRKAEELILAGRVQVNGQVVTEMGFKADAASDHIRVDGKLLQ 79 Query: 61 PREAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHS----KRVFPIGRLDKDSQGLIF 115 E L LNKP G V+T D E R +++F + +R++P+GRLD S+GL+ Sbjct: 80 G--PEKLRYFMLNKPKGYVTTVSDPEGRHTVMEFFHGRGKGGERLYPVGRLDYASEGLLL 137 Query: 116 LTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTV-------TKKCK 168 +TN G L N + +A + EK YLV V TEE + + AG+ I T Sbjct: 138 MTNDGALANTLTKASSHVEKVYLVKVSGRPTEEQLEQIRAGIMIDRGRPGEGRVMTAPAG 197 Query: 169 VKKE---APFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLT 225 V+ F +TL++G NR+IR+M E G+ V+K+ R + L + GE R+L Sbjct: 198 VRMVRDAENPWFELTLIEGRNREIRKMFEETGHFVEKIRRIGYGPLVL-DVEPGEVRELN 256 Query: 226 DDELIDLFKLIENSSSEVKPKAKAKPKTAGIKRPVVKMEKTAE 268 +E+ L + + + KPKA K K + K+A Sbjct: 257 PEEVDSLRRAAQRKRAP-KPKAATKTKRLTMLPKAKPARKSAT 298 >UniRef50_Q3B289 Pseudouridine synthase n=2 Tax=Chlorobium/Pelodictyon group RepID=Q3B289_PELLD Length = 250 Score = 252 bits (645), Expect = 8e-66, Method: Composition-based stats. Identities = 78/243 (32%), Positives = 137/243 (56%), Gaps = 7/243 (2%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPG-DVVKVNGQLIE 60 + +VR+N+Y++ GI SRR AD+ + +G V +NG A G +V PG D V V+G Sbjct: 9 QNEAVRINRYLAMCGIASRRAADQMVLEGRVTINGVLASEPGVKVVPGKDEVIVDGSKFA 68 Query: 61 PREAEDLVLIALNKPVGIVSTTED-GERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNH 119 E + I NKP +++T+ D R+ ++DF++ ++RV+P+GRLD+ + G++ LTN Sbjct: 69 QPEG-RKIYILFNKPRNVITTSSDERNREMVLDFIDVNERVYPVGRLDRKTTGVLLLTND 127 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPIL--GTVTKKCKVKK-EAPFV 176 G L NK++ ++ +KEY+ +D P + + ++ G+ + G C+ K Sbjct: 128 GMLANKLMHPSSNVKKEYIAVLDAPFPQASLPLLTGGMRLSDTGEKVSPCQAKIMGDGSQ 187 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLI 236 I++ +G N Q+RRM + G+EV +L+R +++ + G+WR LT E+ L L Sbjct: 188 VWISIHEGKNHQVRRMFKTLGFEVTRLDRPTYAGLTVGDLRRGQWRHLTRTEVQQLRHLA 247 Query: 237 ENS 239 + Sbjct: 248 GSP 250 >UniRef50_Q1GFA6 Pseudouridine synthase n=3 Tax=Rhodobacteraceae RepID=Q1GFA6_SILST Length = 422 Score = 252 bits (645), Expect = 8e-66, Method: Composition-based stats. Identities = 83/291 (28%), Positives = 121/291 (41%), Gaps = 10/291 (3%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEPREAED 66 R+ K +S +G+ SRREA+R I +G V +NGK + V D + V+G + EAE Sbjct: 63 RIAKVLSRAGVASRREAERMIAEGRVAVNGKVIDSPALNVTNLDRIVVDGNPLP--EAEA 120 Query: 67 LVLIALNKPVGIVSTTEDG-ERDNIVDFVNHS-KRVFPIGRLDKDSQGLIFLTNHGDLVN 124 L KP G+V+TT D R I D + RV +GRLD +S+GL+ LTN G + Sbjct: 121 PRLWLYYKPNGLVTTTSDEKGRKTIFDALPEDLPRVMTVGRLDLNSEGLLLLTNDGGVKR 180 Query: 125 KILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK----KEAPFVFRIT 180 ++ + Y V ++ + + GV I G + + + A I Sbjct: 181 QLELPSTGWLRRYRVRINGRPQDHEFDVLRKGVVIDGERFQPMTISLDRQQGANAWLTIG 240 Query: 181 LVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL-IENS 239 L +G NR+IRR E GY V +L R L + GE +L + D L Sbjct: 241 LREGKNREIRRAMEEVGYPVNRLLRISYGPFQLGTLKEGEVEELRPRVVRDQLGLAAPEG 300 Query: 240 SSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKGR 290 E K K + + RP G GR G+ Sbjct: 301 DGEAKKKPTRPGRGPRNPGAKTAGKGIGAPNARPTGKGAVKAPEGRVFSGK 351 >UniRef50_A6C4P7 Pseudouridine synthase n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C4P7_9PLAN Length = 352 Score = 252 bits (645), Expect = 9e-66, Method: Composition-based stats. Identities = 87/299 (29%), Positives = 139/299 (46%), Gaps = 14/299 (4%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIE 60 +RL K+++ +G+ SRR + YIE G V ++G T +G ++ P ++V+G+ + Sbjct: 19 ESHLIRLQKFLAATGLGSRRHCEEYIETGRVSVDGDVITELGAKIDPETQFIEVDGERVR 78 Query: 61 PREAEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVN-HSKRVFPIGRLDKDSQGLIFLTN 118 + LNKP G + T D R +VD +R+F +GRLD++S+GLI +TN Sbjct: 79 L---QPRRYYLLNKPSGFLCTNNDPAGRRRVVDLFPNDGQRLFTVGRLDENSEGLILVTN 135 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPF--- 175 G+L ++ + Y V V E + + GV V + +K Sbjct: 136 DGELAQRLAHPRYRVARTYHVQVVGNPPREKLDELRKGVRFKEGVFRVSGLKYLKKQGKS 195 Query: 176 -VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFK 234 +TL +G NR+IRRM G++V +L R R ++L + GE R L+D EL L + Sbjct: 196 AFLELTLHEGQNREIRRMMARIGHKVIQLVRIRFGPLNLGKLKTGESRRLSDTELKKLRQ 255 Query: 235 LIENSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSP---GRKKKGR 290 L+ S K K A K + G R A+ GK + G+K G+ Sbjct: 256 LLNEKHSPDIRHRKGKKNAAPAKTRAPRKSVGKRSGERGAAAGKSVSERISGGKKTGGK 314 >UniRef50_A3JIZ1 Pseudouridine synthase n=1 Tax=Marinobacter sp. ELB17 RepID=A3JIZ1_9ALTE Length = 367 Score = 252 bits (645), Expect = 9e-66, Method: Composition-based stats. Identities = 78/312 (25%), Positives = 147/312 (47%), Gaps = 26/312 (8%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREA 64 R+ K ++ +G+ SRRE + +++ G + +NGK T G + DV +++G+ +E A Sbjct: 55 GPERIQKLLARAGVGSRREIEGWMDAGRLLVNGKPVTPGQKATVSDVFELDGKRLEVAAA 114 Query: 65 ED--LVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSK--RVFPIGRLDKDSQGLIFLTNH 119 + ++ NKP G V+T +D E R + D + + R IGRLD ++ GL+ T Sbjct: 115 AEVLRRVLIYNKPEGEVTTRKDPEGRPTVFDRLPRLREHRWISIGRLDLNTTGLVMFTTD 174 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA----PF 175 G+L N+++ ++ ++EY V + + + I + GV + K + Sbjct: 175 GELANRLMHPSSEIDREYAVRIFGEVDDAMIERLRTGVTLEDGEAKFSDISAAGGTGMNR 234 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSG-IPLGEWRDLTDDELIDLFK 234 F +TL++G NR++RR+ E G V +L+R R ++ L + +G+W +L + L + Sbjct: 235 WFHVTLLEGRNREVRRLWESQGVRVSRLKRVRYGSIFLPSRLTVGKWEELDQKAVDLLSR 294 Query: 235 LI------------ENSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRP----ASNGK 278 + + ++++ + + KA P T R + +G R S + Sbjct: 295 TVGLAKMAVPQQTPDEAAAQARQQRKAAPVTNRSNRAASSPGSKSGQGARKWAVADSKPQ 354 Query: 279 RFTSPGRKKKGR 290 R R K R Sbjct: 355 RSGGKARNDKPR 366 >UniRef50_Q1LLR3 Pseudouridine synthase n=15 Tax=Proteobacteria RepID=Q1LLR3_RALME Length = 631 Score = 252 bits (644), Expect = 1e-65, Method: Composition-based stats. Identities = 76/295 (25%), Positives = 135/295 (45%), Gaps = 13/295 (4%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPR 62 D + +L+K ++E G+ SRRE + I QG V +NG A IG ++ P D V+VNG+LI + Sbjct: 231 DDDAPKLHKVLAEGGLGSRREMEELILQGRVSVNGLPAHIGQRILPTDQVRVNGKLIHRK 290 Query: 63 -EAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSK--RVFPIGRLDKDSQGLIFLTN 118 + ++ +KP G + + D E R + D + K + +GRLD +++GL+ T Sbjct: 291 VTTKPPRVLLYHKPSGEIVSQSDPEGRPTVFDSLPRIKNGKWVAVGRLDFNTEGLLIFTT 350 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA----P 174 GD+ N+ + E+EY V + E + + G+ + ++ Sbjct: 351 SGDIANRFMHPRYGVEREYAVRTLGELAEADRQRLLHGIQLDDGEANFLRIADGGGEGVN 410 Query: 175 FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDLF 233 + + L +G NR++RRM E G V +L RTR L G+ G W++L ++ L Sbjct: 411 QWYHVALTEGRNREVRRMFEAVGLTVSRLIRTRYGQFLLPRGLKRGRWQELDPTDVRGLM 470 Query: 234 KLIENSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKK 288 I + P +A+ G+ + + ++ + P +K Sbjct: 471 ANIGLKA----PSKEAQSGGKGVTKVGGRKQREEAALAGMPMHTGMDGLPRYEKS 521 >UniRef50_A0L6G3 Pseudouridine synthase n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L6G3_MAGSM Length = 332 Score = 252 bits (644), Expect = 1e-65, Method: Composition-based stats. Identities = 80/263 (30%), Positives = 134/263 (50%), Gaps = 12/263 (4%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPRE 63 + RL K+++E G+CSRRE + +I++G V +NG+ T +G +V D V V+GQL+ P+ Sbjct: 68 EAPRLQKWLAEQGLCSRREGEVWIQEGRVSINGEVVTELGVKVAKRDRVAVDGQLVTPQR 127 Query: 64 AEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNH--SKRVFPIGRLDKDSQGLIFLTNHG 120 + D I L+KP I+ T D R I D + + S R+ +GRLD +S+GLI LT+ G Sbjct: 128 SRDTA-IILHKPKSIICTRSDPQGRRTIFDLIENHGSSRLITVGRLDINSEGLIILTSDG 186 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSA-GVPILGTVTKKCKV------KKEA 173 L + ++ + + Y V + + + GV + T ++ ++ Sbjct: 187 QLAHGLMHPSREVPRVYRVKTHGILLASQLEQIRTVGVRLEDGPTGPLEIVLDRGREQGN 246 Query: 174 PFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF 233 + ITL +G NR++RR+ +HFG +V +L R +SL + G WR +T DE L Sbjct: 247 NSWYTITLREGRNREVRRIFDHFGLQVARLLRVGYGGISLGNLEPGAWRPVTVDEWNMLQ 306 Query: 234 KLIENSSSEVKPKAKAKPKTAGI 256 K+ + +A + Sbjct: 307 KISKRPIPGESAQAIPERGGGQD 329 >UniRef50_C1DTU8 Pseudouridine synthase n=5 Tax=Bacteria RepID=C1DTU8_SULAA Length = 247 Score = 251 bits (643), Expect = 1e-65, Method: Composition-based stats. Identities = 82/248 (33%), Positives = 138/248 (55%), Gaps = 13/248 (5%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEPREA 64 RLNKYI++SGICSRR+AD I +G V +NGK +G ++ P DVV+V G++++P Sbjct: 2 ERLNKYIAKSGICSRRKADELILEGKVKVNGKTVKNLGLKIDPKKDVVEVEGKIVKPT-- 59 Query: 65 EDLVLIALNKPVGIVSTTEDG--ERDNIVDFVNH---SKRVFPIGRLDKDSQGLIFLTNH 119 E + +A+ KPVG +S R + DF+N ++FP+GRLD +S+GL+ LTN Sbjct: 60 EKKIYLAIYKPVGYLSAVGKDRFGRKTLTDFLNELKIPYKLFPVGRLDYNSEGLLILTND 119 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKV----KKEAPF 175 G+ NK+ N+ +K Y V V +++E ++ M G + K K+ ++E Sbjct: 120 GEFANKVAHPRNEIKKVYKVKVAGEVSQETLKKMEEGTILEDGFFKPDKIKMLKREEDGT 179 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 + + G R IRR + FG+ VK+L R +I ++ + + ++R L++ E+ + Sbjct: 180 WLLVEIHSGKKRIIRRFMDSFGHRVKRLIRVKIGSIDIGNLKPFDYRYLSEKEIRSILDE 239 Query: 236 IENSSSEV 243 +S + Sbjct: 240 KRDSFKQR 247 >UniRef50_C6BUF1 RNA-binding S4 domain protein n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BUF1_DESAD Length = 251 Score = 251 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 86/246 (34%), Positives = 139/246 (56%), Gaps = 12/246 (4%) Query: 1 MLPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKP-GDVVKVNGQL 58 M +++RLNKYI+ +GI SRR AD +++G V +NG+ A + G QV P D V+VNG+L Sbjct: 1 MTEKTTIRLNKYIASAGIASRRGADELVQKGKVKVNGELADSPGIQVDPDNDRVEVNGKL 60 Query: 59 IEPREAEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNH---SKRVFPIGRLDKDSQGLI 114 ++ E + I L+K + V+T +D R ++D + ++RVFP+GRLD S+G++ Sbjct: 61 VQHDEKSKDLYILLHKTIETVTTAKDPQGRKTVLDLLPPDVINRRVFPVGRLDFYSEGML 120 Query: 115 FLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPIL--GTVTKKCKVKKE 172 LT G+L N++ K Y VT+ ++E+ + M G+ + G + K+K Sbjct: 121 LLTTDGELCNRMTHPKWHLPKIYHVTIRGKLSEKELSVMQNGMYLEDKGELLAPVKIKAI 180 Query: 173 AP----FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDE 228 + + + L QG+NRQIRRM F + +L+R R + L + G+WR+L+ E Sbjct: 181 SEVGETTKYEMELRQGINRQIRRMFGEFDKTILRLKRVRQGRIELGALKPGKWRELSAKE 240 Query: 229 LIDLFK 234 L L K Sbjct: 241 LTLLKK 246 >UniRef50_P45104 Ribosomal large subunit pseudouridine synthase B n=177 Tax=Gammaproteobacteria RepID=RLUB_HAEIN Length = 357 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 74/284 (26%), Positives = 140/284 (49%), Gaps = 16/284 (5%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVK--PGDVVKVNGQLIEPR 62 +L K ++ +G SRRE + I G V + GK AT+GD++ G V+++GQ+I Sbjct: 74 EGEKLQKVLARAGQGSRREIETMIAAGRVSVEGKIATLGDRIDVHSGVKVRIDGQIINLS 133 Query: 63 EAEDLV--LIALNKPVGIVSTTEDGE-RDNIVDFVNHS--KRVFPIGRLDKDSQGLIFLT 117 + + ++ KP G + T D E R + D + R +GRLD ++ GL+ T Sbjct: 134 HTQKEICRVLMYYKPEGELCTRSDPEGRATVFDRLPRLTGSRWIAVGRLDINTSGLLLFT 193 Query: 118 NHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA---- 173 G+L N+++ + E+EY V V + + + + GV + + ++K Sbjct: 194 TDGELANRLMHPSREVEREYSVRVFGQVDDAMLARLRKGVQLEDGLANFKEIKFTGGVGI 253 Query: 174 PFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDELIDL 232 + +TL++G NR++RR+ E G +V +L R R N+ L G+P G W ++ + + L Sbjct: 254 NQWYDVTLMEGRNREVRRLWESQGIQVSRLIRIRYGNIKLMKGLPRGGWEEMDLENVNYL 313 Query: 233 FKLIENSSSE----VKPKAKAKPKTAGIKRPVVKMEKTAEKGGR 272 +L+ + +A +PK+ I++ V + + ++ + Sbjct: 314 RELVGLPAETETKLDVKQASRRPKSGQIRKAVKRYSEMNKRYKK 357 >UniRef50_A5IXL5 Pseudouridine synthase n=3 Tax=Mycoplasma RepID=A5IXL5_MYCAP Length = 246 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 77/241 (31%), Positives = 142/241 (58%), Gaps = 2/241 (0%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREA 64 VR+ K I++SG+ SRR+A++ I +G VF+NG +++IGD+ D +KVNG++I + Sbjct: 3 ELVRVQKLIAQSGLMSRRDAEKMISKGLVFVNGIKSSIGDKASMNDEIKVNGKIINLTKN 62 Query: 65 EDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLV 123 LNKP ++T++D R ++D +N S+R+ P+GRLD+++ G++ LT +LV Sbjct: 63 TVFKYYLLNKPKNTITTSKDPKGRHTVIDLINTSERIVPVGRLDRNTTGVLLLTTDYELV 122 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQ 183 NK+ + E+ Y +D P+T + R ++AG+ I G ++ + V + + I+L Sbjct: 123 NKLTHPKYEIERVYRARIDSPLTLKEFRELNAGIEIDGKMSYQI-VDQVDTKSYLISLHV 181 Query: 184 GLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSSSEV 243 G ++++ E G+ V L+R N+++ +P G +R+LT E+ +L L+E ++ Sbjct: 182 GSYHHVKKLFEKIGHSVLTLKRVSYANLTVDKLPEGMYRELTIKEVKNLKLLVEQQEKKL 241 Query: 244 K 244 Sbjct: 242 C 242 >UniRef50_C0W3E8 Pseudouridine synthase n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W3E8_9ACTO Length = 325 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 68/254 (26%), Positives = 125/254 (49%), Gaps = 22/254 (8%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEPR 62 + RL K ++ +G+ SRR + I G V ++G T G +V P ++V+G + Sbjct: 74 TGERLQKVLAHAGVASRRACEEIIAAGRVSVDGVVVTEPGVRVDPSRQEIRVDGSRV--L 131 Query: 63 EAEDLVLIALNKPVGIVSTTEDG-ERDNIVDFV-------------NHSKRVFPIGRLDK 108 D++ + L+KP G+V+T ED R + D S R+ +GRLD Sbjct: 132 TDPDVITVLLHKPAGVVTTMEDPQGRPTVADLAEQFISEHRTELEHPESVRLVHVGRLDT 191 Query: 109 DSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCK 168 +++GL+ L+N GDL ++++ + K Y+ V+ + R + G+ + + + + Sbjct: 192 ETEGLLLLSNDGDLAHRLMHPSFEISKTYVAIVEGQVEGWVPRKLRRGIELDDGLAQADR 251 Query: 169 VKKEAP----FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDL 224 V + + ITL G NR +RRM + G+ V +L RT++ + + G+ G+ R L Sbjct: 252 VVVKDAGPSGSIVEITLHSGKNRIVRRMLDAVGHPVTRLARTKLGPLGIGGLRPGQMRRL 311 Query: 225 TDDELIDLFKLIEN 238 T +E+ L + + Sbjct: 312 TGEEITALQQEVGL 325 >UniRef50_C3X1E1 Pseudouridine synthase n=2 Tax=Oxalobacter formigenes RepID=C3X1E1_OXAFO Length = 510 Score = 251 bits (641), Expect = 2e-65, Method: Composition-based stats. Identities = 80/299 (26%), Positives = 153/299 (51%), Gaps = 11/299 (3%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPR 62 D + +L+K ++++G+ SRR+ + I G V +NG+ A IG ++ P D V++NG+LI+ + Sbjct: 170 EDDAPKLHKVLADAGLGSRRDMEELIVAGRVSVNGEPAHIGQRILPTDQVRLNGKLIQRK 229 Query: 63 EAED-LVLIALNKPVGIVSTTEDGE-RDNIVDFVN--HSKRVFPIGRLDKDSQGLIFLTN 118 A+ ++ +KP G + + +D E R ++ D + + + +GRLD +++GL+ TN Sbjct: 230 IAKSLPRVLTYHKPAGEIVSRDDPEKRPSVFDRLPLLKNSKWLAVGRLDFNTEGLLLFTN 289 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA----P 174 GDL N+++ + E+EY V + E + + AGV + + + K+ Sbjct: 290 SGDLANRLMHPRYNIEREYAVRTLGELEEGMRQKLLAGVDLGDGIGQFSKIVDGGGEGVN 349 Query: 175 FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDLF 233 +R+T+ +G NR++RRM E G V +L RTR V LS + G W +L ++ + +L Sbjct: 350 KWYRVTIGEGRNREVRRMFEAVGLTVSRLIRTRYGAVVLSQSLKRGRWDELEENAVRNLL 409 Query: 234 KLIENSSSEVKPKA--KAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKGR 290 +L + + K +G K + + + + ++ + G+K R Sbjct: 410 RLSGLDNKDDKKTQGKTRSRNASGQYPDFPKSQSLSIRELQLQGQHQKKSPGGQKGSPR 468 >UniRef50_A5EVQ2 Pseudouridine synthase n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EVQ2_DICNV Length = 266 Score = 250 bits (639), Expect = 4e-65, Method: Composition-based stats. Identities = 71/262 (27%), Positives = 133/262 (50%), Gaps = 16/262 (6%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQL--IE 60 D + R+ KY++ G+ SRR+ + +I++G + ++G+ A +G ++ + + ++G+ I Sbjct: 5 NDDAQRIQKYLAARGVGSRRQIETWIKEGRLKVDGRVAELGQKISGNERLSLDGKPLRIA 64 Query: 61 PREAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSK--RVFPIGRLDKDSQGLIFLT 117 +++ +KP G + T +D E R ++ + R IGRLD ++ GL+ T Sbjct: 65 VEHKNPHMILMYHKPAGEICTRKDPEGRVSVFQHLPKISHGRWVAIGRLDLNTSGLLLFT 124 Query: 118 NHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA---- 173 N G L N+++ + E+EY V V +TEE + + G+P+ + + ++ Sbjct: 125 NDGALANQLMHPSAEIEREYWVRVAGEVTEEMLTALRQGIPLDDGLARFTEICPLKTLHE 184 Query: 174 -----PFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDD 227 F +TL +G NR++RR+ E G +V +L+R R +SL + G R LT Sbjct: 185 DDTQFNRYFSVTLKEGRNREVRRLWEAVGCKVSRLKRIRYGTISLPPSLSAGRHRLLTAG 244 Query: 228 ELIDLFKLI-ENSSSEVKPKAK 248 E L L+ E + + PK + Sbjct: 245 EQASLISLVSEKNRRDNSPKPR 266 >UniRef50_C9RK28 Pseudouridine synthase n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RK28_FIBSS Length = 243 Score = 250 bits (639), Expect = 4e-65, Method: Composition-based stats. Identities = 75/243 (30%), Positives = 122/243 (50%), Gaps = 11/243 (4%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKP-GDVVKVNGQLIEPREA 64 +R+NKYIS SG SRR AD + G V +NG+ + +G QV D V V+G+L++ Sbjct: 1 MRINKYISLSGFASRRAADELVADGRVQVNGETISDLGHQVDETKDQVTVDGKLLKLPTN 60 Query: 65 EDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHSKRVF-PIGRLDKDSQGLIFLTNHGDL 122 + +I +KP G V T +D R + D++ F +GRLD S+GL+ T+ G+L Sbjct: 61 KKTKVIMFHKPAGCVCTKDDPQGRRTVYDYLPPGYHNFKYVGRLDLQSRGLLLFTDDGEL 120 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILG-------TVTKKCKVKKEAPF 175 + ++ + + Y V +P++E + + GV I Sbjct: 121 LYRLTHPSFEVPRSYYVWTTRPLSESAAQRLVDGVDIRDPEDPDAQEEIAFATDVYLENG 180 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 + L++G NR+IRRM GYE++ L+R + L +P GE+R+LT +EL L + Sbjct: 181 FAELVLIEGKNREIRRMMRAIGYEIRDLKRVSYCQIQLGDLPAGEFRELTPNELNKLRQA 240 Query: 236 IEN 238 + Sbjct: 241 VHL 243 >UniRef50_Q1MQ05 Pseudouridine synthase n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MQ05_LAWIP Length = 270 Score = 250 bits (639), Expect = 4e-65, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 137/248 (55%), Gaps = 14/248 (5%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEPR 62 +S+R+NK ++ +G+CSRR D+YI G V +NGK T G + P D++ ++G+ ++ + Sbjct: 22 TSIRINKALANAGVCSRRNVDKYILNGEVTINGKSVTQPGIYIHPDKDIIALHGRRVDIQ 81 Query: 63 EAEDLVLIA-LNKPVGIVSTTEDGE-RDNIVDFVNHS---KRVFPIGRLDKDSQGLIFLT 117 + KP+ ++S+ +D + R ++DF+ R++P+GRLD S+GL+ +T Sbjct: 82 LKNKKYYYLSMYKPIKVISSVKDPQNRLTVLDFIPFPWKNYRLYPVGRLDFFSEGLLLIT 141 Query: 118 NHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI-LGTVTKKCKVKKEAP-- 174 N G+L ++ K Y V + + I ++ +S G+ + GT KV+ + Sbjct: 142 NDGELTQRLTHPRYHISKVYHVLIRERILNTTLKNISKGITLSDGTKLPPAKVRVLSSIT 201 Query: 175 ----FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELI 230 ITL QG+NRQIRRMC+ G + KL R + N++LS + GE R L +DE+ Sbjct: 202 ETNTTWLEITLQQGINRQIRRMCKELGLTILKLIRVKQGNINLSNLQPGEVRPLKNDEIK 261 Query: 231 DLFKLIEN 238 L K ++ Sbjct: 262 LLKKNVQL 269 >UniRef50_A9GX03 Pseudouridine synthase n=2 Tax=Bacteria RepID=A9GX03_SORC5 Length = 399 Score = 250 bits (639), Expect = 5e-65, Method: Composition-based stats. Identities = 88/314 (28%), Positives = 145/314 (46%), Gaps = 32/314 (10%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVK-PGDVVKVNGQLIEPRE 63 RL K I+ +G+ SRR ++ I G V +NG+ T +G + D ++V+G+ + Sbjct: 2 EERLQKIIARAGVASRRASEELILAGRVRVNGRVVTELGLKADRQKDRIEVDGKRLV--- 58 Query: 64 AEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHS-KRVFPIGRLDKDSQGLIFLTNHGD 121 +E V +AL+KP +VST D E R + D V + R++P+GRLD + G++ +TN GD Sbjct: 59 SEAPVYVALHKPRNVVSTLRDPEGRPTVADHVRGTGARLYPVGRLDFATSGILLMTNDGD 118 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK----KEAPFVF 177 N +L K Y++ V ++++ + G+ + VT + + + Sbjct: 119 FANALLHPRGGVPKTYVLKVQGVMSDDDLTPWREGIRLEDGVTLPAEARLLRHEGDKTWL 178 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLI- 236 +TL +G N+QIRRM E G+ V +L RT VS G+ GEWR LT DEL+ + + Sbjct: 179 EVTLREGRNQQIRRMGEATGWPVMRLARTTFAGVSSEGLRPGEWRALTVDELLHIREAFG 238 Query: 237 --------------------ENSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASN 276 +SS + T + A+ R +N Sbjct: 239 VPKRIRGAVMGASSGPVDHRRTASSARSGAKASPRPTQEAAGAAARSRGPAQPRVRSRAN 298 Query: 277 GKRFTSPGRKKKGR 290 ++PG+ GR Sbjct: 299 ADAPSAPGQGPAGR 312 >UniRef50_Q04F57 Pseudouridine synthase n=2 Tax=Oenococcus oeni RepID=Q04F57_OENOB Length = 237 Score = 250 bits (638), Expect = 6e-65, Method: Composition-based stats. Identities = 63/236 (26%), Positives = 119/236 (50%), Gaps = 11/236 (4%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREAE 65 RL K I+++G+ SRR+A+ I G V +NGK T +G +V D+V V+ + I E Sbjct: 5 ERLQKRIAQAGVASRRKAEEMIVNGQVKVNGKIITKLGKKVSSDDIVYVDNKKINEESFE 64 Query: 66 DLVLIALNKPVGIVSTTED-GERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVN 124 LNKP G VS+ + ++++ + R+F +GRLD+D+ G++ LTN G+L Sbjct: 65 ---YYLLNKPAGYVSSNRSYPNQPSVIELIKTKTRIFSVGRLDQDTTGVLLLTNDGELTQ 121 Query: 125 KILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA------PFVFR 178 K+ + ++ Y V + E+ I ++ + G + + + Sbjct: 122 KLTHPKHRIKRTYAAWVKGIVNEDEIEQLTKPIRFDGEIYFPQAARILKVDQKRQESLIE 181 Query: 179 ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFK 234 IT+ +G N +I+++ + G+ V KL R +++ + G+ R L++ E+ + + Sbjct: 182 ITIAEGKNHEIKKILDFIGHPVIKLNRDMFDGITIGNLKKGQHRALSEQEVEKIKR 237 >UniRef50_Q2LSY4 Pseudouridine synthase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LSY4_SYNAS Length = 251 Score = 250 bits (638), Expect = 7e-65, Method: Composition-based stats. Identities = 72/251 (28%), Positives = 121/251 (48%), Gaps = 10/251 (3%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPG-DVVKVNGQLIEPRE 63 RL K ++ SG+ SRR+A+ I +G V +N + +G + D ++V+G+LI Sbjct: 2 EERLQKILARSGVASRRKAEEMIREGRVSVNSEIVRELGSKADIERDEIRVDGKLICAE- 60 Query: 64 AEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHS-KRVFPIGRLDKDSQGLIFLTNHGD 121 E V + LNKP G V+ D + R ++ + R+FP+GRLD DS+GL+ LTN G Sbjct: 61 -ETKVYVMLNKPRGYVTALSDPQKRPLVIHLLPELGVRLFPVGRLDYDSEGLLLLTNDGG 119 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA----PFVF 177 ++ K Y V + + + G+ + +V E Sbjct: 120 FAQRVQHPRYRISKTYRVKISGRLNAAEFNRLQKGLELEDGKFAPDEVALEEINPKSSWL 179 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIE 237 + + +G NR IRR E G+EV +L RT + ++ L + G++R L E+ L + Sbjct: 180 TMKISEGRNRVIRRAFEQLGHEVLRLIRTAVADLHLGNLREGDYRLLKGWEVQQLLTPRK 239 Query: 238 NSSSEVKPKAK 248 S S++ P+ + Sbjct: 240 RSGSKILPEKE 250 >UniRef50_D0SB72 Pseudouridine synthase n=5 Tax=Acinetobacter RepID=D0SB72_ACIJO Length = 368 Score = 249 bits (637), Expect = 7e-65, Method: Composition-based stats. Identities = 78/309 (25%), Positives = 148/309 (47%), Gaps = 24/309 (7%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLI--EPRE 63 S +L K ++ G+ SRR + I G V +NG+ A +G++++PGD ++++G+ + + + Sbjct: 2 SEKLQKVLARVGLGSRRYMEEVIAAGRVSVNGQVAQVGERIEPGDELRIDGRKVSFQIED 61 Query: 64 AEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH--SKRVFPIGRLDKDSQGLIFLTNHG 120 ++ KP G + + D E R + D + + R +GRLD +S GL+ TN G Sbjct: 62 EIRRRVLIYYKPEGEICSRNDPESRPTVFDQLPAIANDRWVMVGRLDINSTGLLLFTNDG 121 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA----PFV 176 +L N+++ N+ E+EY V V +T + M GV + K + Sbjct: 122 ELANRLMHPSNEVEREYAVRVMGEVTPQIKNNMLKGVVLDDGPAKFESFSEIGGEGINRW 181 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDLFKL 235 +++ + +G NR++RR+ E G +V +L RTR V L + G W +L +++ +L K Sbjct: 182 YQVVVKEGRNREVRRIFESQGLKVSRLLRTRYGTVILPRELRTGRWMELDKNDIDNLTKA 241 Query: 236 IENSSSE--------------VKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFT 281 +E + ++ K A + +++ E ++ +PA N +R Sbjct: 242 VELKPRQGTGLYGMAKRRTERMQEKPMAARRGGFLRQQRRDNEDEGQQQAKPAFNRERRE 301 Query: 282 SPGRKKKGR 290 +P + R Sbjct: 302 NPNGHSQRR 310 >UniRef50_Q3J464 Pseudouridine synthase n=15 Tax=Bacteria RepID=Q3J464_RHOS4 Length = 508 Score = 249 bits (637), Expect = 8e-65, Method: Composition-based stats. Identities = 81/296 (27%), Positives = 129/296 (43%), Gaps = 11/296 (3%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEPR 62 R+ K +S +GI SRR+A+R IE G + +NG+ + V P D + V+GQ + P Sbjct: 5 KDGERIAKVLSRAGIASRRDAERMIELGRIAVNGRTIDSPALNVGPKDRITVDGQPLAP- 63 Query: 63 EAEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTNHG 120 E L KP G+V++ D R+ + D + RV +GRLD +S+GL+ LTN G Sbjct: 64 -PEPARLWLYYKPEGLVTSASDEKGRETVFDHLPEGMPRVMSVGRLDLNSEGLLLLTNDG 122 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK----KEAPFV 176 +L ++ ++Y V V T+ + + G+ + G + V + A Sbjct: 123 ELKRRLELPSTGWLRKYRVRVKGNPTDADLEPLRKGITVEGESFQPMTVSLDRVQGANAW 182 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLI 236 + L +G NR+IRR G V +L R L+ + G ++ L D L Sbjct: 183 LTVGLREGKNREIRRAMSALGLTVNRLIRVSYGPFRLNELEPGMVEEVRPKILRDQLGLD 242 Query: 237 ENSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEK--GGRPASNGKRFTSPGRKKKGR 290 ++ E +P KP+ A + A G RPA S + R Sbjct: 243 PHADGEARPARGRKPEGAARPARSEGAARPARAEGGARPARAEGAARSERTARPPR 298 >UniRef50_D2R7V9 Pseudouridine synthase n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R7V9_9PLAN Length = 811 Score = 248 bits (635), Expect = 1e-64, Method: Composition-based stats. Identities = 82/271 (30%), Positives = 132/271 (48%), Gaps = 10/271 (3%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKP-GDVVKVNGQLIEPRE 63 + RL K ++ +GI SRR+ + I +G V ++GK T +G +V P ++V+G+ + Sbjct: 33 AERLQKVLAAAGIGSRRDCEELITEGRVDVDGKVVTELGTRVDPVKQTIRVDGEALR--- 89 Query: 64 AEDLVLIALNKPVGIVSTTED-GERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDL 122 + +NKP G+V+T D R ++D V +RVF +GRLD+ S+GLI +TN G+ Sbjct: 90 KPQRLYFVVNKPEGVVTTNYDQAGRTRVIDLVPTDERVFAVGRLDRASEGLIIVTNDGEF 149 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFV----FR 178 N++ K YLV V + + + G+ + K ++ + Sbjct: 150 ANRVTHPRYGVTKTYLVRVAGEASTAELAKLRRGIHLSDGFCKVDAIQVKRRHKQSTDMV 209 Query: 179 ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIEN 238 I L +G NR+IRR+ G++V KL+R + ++ L +PLG WR L E+ L Sbjct: 210 IQLSEGKNREIRRILARIGHKVLKLKRLAVGSLKLGELPLGAWRWLDKQEIERLLSEARL 269 Query: 239 SSSEVKPKAKAKPKTAGIKRPVVKMEKTAEK 269 E K A TA K K K+A Sbjct: 270 RRKENKKGKSATATTADGKAAPKKPAKSAGA 300 >UniRef50_A6G735 Pseudouridine synthase n=2 Tax=Bacteria RepID=A6G735_9DELT Length = 300 Score = 248 bits (635), Expect = 1e-64, Method: Composition-based stats. Identities = 85/277 (30%), Positives = 143/277 (51%), Gaps = 16/277 (5%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPG-DVVKVNGQLIE 60 VRL K+++ +G+ SRR+A+ I G V +NG+ +G +V P D V V G+ I+ Sbjct: 27 QRDGVRLQKFMASAGVASRRKAEELITAGVVRVNGQVVRELGTRVFPERDRVTVRGEPIQ 86 Query: 61 PREAEDLVLIALNKPVGIVSTT----EDGERDNIVDFVNH-SKRVFPIGRLDKDSQGLIF 115 AE V LNKP G+VS+ ++ R ++ ++ S+R++P+GRLD S+G++ Sbjct: 87 ---AESKVYYVLNKPDGVVSSAAGSVDERGRPTVISLLHGVSERLYPVGRLDFHSRGVLL 143 Query: 116 LTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGT-VTKKCKV----- 169 LTN G L + + K Y V +TEE + + GV + +T+ Sbjct: 144 LTNDGGLAEALTHPRHGVVKTYHVKFQGKLTEEQEQLLRDGVELDDGAITRPVAELFAFR 203 Query: 170 KKEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDEL 229 + ++I + +GLNRQIRRM E G+ V KL R I +++ G+P GE+R L E+ Sbjct: 204 ETATNVWYQIGIREGLNRQIRRMGEAIGHPVLKLIRVAIGDITADGVPEGEFRALNATEV 263 Query: 230 IDLFKLIENSSSEVKPKAKAKPKTAGIKRPVVKMEKT 266 L ++ + + ++ + G +R K +K+ Sbjct: 264 GQLLANVKLAPEGRRGRSGGAGRPRGGQRDRPKAKKS 300 >UniRef50_D2RB61 Pseudouridylate synthase n=2 Tax=Gardnerella vaginalis RepID=D2RB61_GARVA Length = 284 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 76/245 (31%), Positives = 128/245 (52%), Gaps = 11/245 (4%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIE 60 ++++RL K ++E+G SRR+ + I G V ++ + T +G +V P V+V+G ++ Sbjct: 42 DNNAIRLQKLLAEAGFGSRRKCEEIILDGRVEVDDELVTTLGTRVDPKRQKVRVDGSRVK 101 Query: 61 PREAEDLVLIALNKPVGIVSTTEDG-ERDNIVDFV-NHSKRVFPIGRLDKDSQGLIFLTN 118 LV +AL+KP ++S +D R + D V + +R+F +GRLD DS+GLI +TN Sbjct: 102 F--NTKLVTLALHKPKRVLSAMDDPKGRFTLRDIVGDKYERIFHMGRLDYDSEGLILMTN 159 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGM-SAGVPILGTVTK----KCKVKKEA 173 G+L ++ + EK Y+ TV+ I R + S GV + K + Sbjct: 160 DGELSQHVMHPKYEVEKTYIATVEGKINGMVCRRLVSQGVNLEDGWIKLDRCAIIDQNHD 219 Query: 174 PFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF 233 + +I L G NR +RR+ G+ VK+L RT+I + L + G +R L+ E+ L Sbjct: 220 TTMVKIVLHSGKNRIVRRIFGAVGFPVKRLVRTQIGPIKLGDLKAGSYRVLSQTEVRSLS 279 Query: 234 KLIEN 238 K + Sbjct: 280 KEVGL 284 >UniRef50_Q8X4Q8 Ribosomal large subunit pseudouridine synthase B n=117 Tax=Bacteria RepID=RLUB_ECO57 Length = 290 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 82/289 (28%), Positives = 140/289 (48%), Gaps = 12/289 (4%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQV--KPGDVVKVNGQLIEPRE 63 S +L K ++ +G SRRE + IE G V ++GK A +GD+V PG ++++G LI RE Sbjct: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 Query: 64 AEDLV--LIALNKPVGIVSTTEDGE-RDNIVDFVNHSK--RVFPIGRLDKDSQGLIFLTN 118 + + + ++A KP G + T D E R + D + + R +GRLD ++ GL+ T Sbjct: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA----P 174 G+L N+++ + E+EY V V + + +R +S GV + +K Sbjct: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 Query: 175 FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDELIDLF 233 + +TL +G NR++RR+ E G +V +L R R ++ L G+P G W +L + L Sbjct: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 Query: 234 KLIENSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTS 282 +L+E A K + + + K + +G R Sbjct: 242 ELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRNNG 290 >UniRef50_D1N1S2 Pseudouridine synthase n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N1S2_9BACT Length = 241 Score = 248 bits (633), Expect = 2e-64, Method: Composition-based stats. Identities = 86/233 (36%), Positives = 121/233 (51%), Gaps = 6/233 (2%) Query: 1 MLPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLI 59 M D+ RL K +S +GI SRR A I+ G V +NG+ G +V PGD V+ +G + Sbjct: 1 MENDNRERLVKILSAAGIASRRGAGDLIKAGRVTVNGETVFEPGFRVAPGDRVEYDGVPV 60 Query: 60 EPREAEDLVLIALNKPVGIVSTTEDGERDN-IVDFVN--HSKRVFPIGRLDKDSQGLIFL 116 E V I LNKP G V T D D VD + R+F GRLDKDS+GLI Sbjct: 61 --LAEERKVYIMLNKPRGYVCTNADPHADLKAVDLIRLTPPLRLFSAGRLDKDSEGLILF 118 Query: 117 TNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFV 176 +N GD V ++ ++ K Y V V + + M GV G + K V + Sbjct: 119 SNDGDYVARLTHPRHEILKVYQVRVRREFKPAELEQMRRGVLERGELLKVHAVSRCGDCT 178 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDEL 229 + ITL +G NR+IRR+ G ++L+R +I + L G+P+G WR+LT E+ Sbjct: 179 YLITLNEGKNREIRRLTAALGSPTRRLKRLQIGALRLGGLPVGNWRELTPAEI 231 >UniRef50_Q3IDR5 Pseudouridine synthase n=3 Tax=Alteromonadales RepID=Q3IDR5_PSEHT Length = 229 Score = 248 bits (633), Expect = 2e-64, Method: Composition-based stats. Identities = 90/229 (39%), Positives = 137/229 (59%), Gaps = 4/229 (1%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREA 64 + +RL KYI+ +G+CSR++A R I++G V +N + A D V D + VNGQ+I+ Sbjct: 3 TKIRLAKYIAHAGVCSRKQASRLIDEGAVIVNNRPANHIDHVDEQDQITVNGQIIKGT-- 60 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVN 124 +L+ A +KPVGI + + ++ + RV+PIGRLDKDS+GL+ LTN G+L N Sbjct: 61 AELIYFAYHKPVGIDCKLDQNDPASLYHHLPTITRVYPIGRLDKDSRGLLILTNDGELCN 120 Query: 125 KILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQG 184 +++ K YLV+V+K I EF M+AGVP+ +T C V+K A F I L QG Sbjct: 121 QLIHPDFHQPKRYLVSVNKSIDAEFCTKMAAGVPVDKQITLPCSVEKIADKQFSIILKQG 180 Query: 185 LNRQIRRMCEHFGYEVKKLERTRIMNVSLS--GIPLGEWRDLTDDELID 231 LNRQIR+M + GY+V L R +I ++L + G++ + ++I Sbjct: 181 LNRQIRKMAHYCGYKVIDLYREQISELTLQTLNLAQGQYIAINKSDIIK 229 >UniRef50_UPI0001C337CA ribosomal large subunit pseudouridine synthase B n=1 Tax=cyanobacterium UCYN-A RepID=UPI0001C337CA Length = 254 Score = 248 bits (633), Expect = 2e-64, Method: Composition-based stats. Identities = 76/246 (30%), Positives = 127/246 (51%), Gaps = 15/246 (6%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPG-DVVKVNGQLIEPREAED 66 R+ K +S+ GI SRR A+ I + + LNG+ +GD+ P D+++++G++I+ + Sbjct: 4 RVQKILSQLGIASRRHAEILILEKRLKLNGQIVLLGDKADPNHDLLELDGKIIKSHKKTQ 63 Query: 67 LVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSKR----VFPIGRLDKDSQGLIFLTNHGD 121 L I +NKPVGI+ + +D + R ++D + + R + P+GRLD +S G + LTN G+ Sbjct: 64 LFYILVNKPVGIICSCKDSQNRSIVMDLLPSNLRKGMGIHPVGRLDMNSSGALLLTNDGN 123 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFV----F 177 L ++ K Y V V T+ ++ GV + G T ++ Sbjct: 124 LTLRLTHPRYHLPKIYEVLVRGNFTQAILKDWRQGVVLDGKKTLPAYLEVINNNRQYTNL 183 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-----SGIPLGEWRDLTDDELIDL 232 +I L +G NR IRR+ + F +V KL RT I +SL + LG +R L+ E+ L Sbjct: 184 KIILTEGKNRHIRRIAQKFELDVIKLHRTAIGPISLSTSKVDNVKLGHYRLLSSSEINTL 243 Query: 233 FKLIEN 238 L + Sbjct: 244 KYLTKL 249 >UniRef50_A5WGV6 Pseudouridine synthase n=7 Tax=Moraxellaceae RepID=A5WGV6_PSYWF Length = 345 Score = 247 bits (631), Expect = 3e-64, Method: Composition-based stats. Identities = 82/296 (27%), Positives = 152/296 (51%), Gaps = 13/296 (4%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPR-- 62 + +L K ++ G+ SRR+ + I+ G V +N K A+IGD+V+ GD ++V+G+LI+ + Sbjct: 41 GTEKLQKALARMGLGSRRQMEEVIKAGRVSINQKPASIGDRVEQGDEIRVDGRLIKYKSE 100 Query: 63 EAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHS--KRVFPIGRLDKDSQGLIFLTNH 119 + ++A KP G + + D E R + + + R +GRLD +S GL+ TN Sbjct: 101 REKRRRVLAYYKPEGEICSANDPEGRTTVFERLPKLTHDRWIMVGRLDINSTGLLLFTND 160 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA----PF 175 G+L ++++ N+ +EY V + +T E +R ++ GV + + K +K+ Sbjct: 161 GELAHRLMHPSNEIVREYAVRILGELTPEMMRNLTDGVMLEDGLAKFEDIKQGGGEGVNK 220 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDELIDLFK 234 + + L +G NR++RR+ E G +V +L RT +V L + G + +L ++ L Sbjct: 221 WYHVKLKEGRNREVRRLIESQGLKVSRLLRTSYGSVDLPKELRTGRFIELDRKDIHRLID 280 Query: 235 LIENSSSEVK---PKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKK 287 L+ E KAK K + K + +T+ + GR +++ + TS R + Sbjct: 281 LVGIRPREDMGVHGKAKEKKERFQKKPMKARTIRTSSRSGRASTSTGKNTSATRGR 336 >UniRef50_B2HUK5 Pseudouridine synthase n=9 Tax=Gammaproteobacteria RepID=B2HUK5_ACIBC Length = 307 Score = 247 bits (631), Expect = 3e-64, Method: Composition-based stats. Identities = 73/296 (24%), Positives = 141/296 (47%), Gaps = 12/296 (4%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAE 65 S +L K ++ G+ SRR + I G V +NG+ A +G++++PGD ++++G+ ++ + + Sbjct: 2 SEKLQKVLARIGLGSRRYMEEVIAAGRVSVNGRIAQVGERIEPGDELRIDGRKVQFQIED 61 Query: 66 --DLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH--SKRVFPIGRLDKDSQGLIFLTNHG 120 ++ KP G + + D E R + D + + R +GRLD +S GL+ TN G Sbjct: 62 EIRRRVLIYYKPEGEICSRNDPEKRPTVFDHLPQIANDRWVMVGRLDINSTGLLLFTNDG 121 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA----PFV 176 +L N+++ N+ E+EY V V +T + + M GV + K + Sbjct: 122 ELANRLMHPSNEIEREYAVRVMGEVTPQLRQNMVNGVELEDGPAKFESFSEIGGEGINRW 181 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDLFKL 235 +++ + +G NR++RR+ E G +V +L RTR V L + G W +L ++ +L K Sbjct: 182 YQVVVKEGRNREVRRIFESQGLKVSRLLRTRYGTVILPRELRTGRWMELDKTDIDNLAKS 241 Query: 236 IENSSSEVKP--KAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKG 289 +E + + ++P+ + R + + G ++K Sbjct: 242 VELKPRQGTGLFGMAKRRTERMTEKPMAARRGGYLRQQRRDDEKEAPANTGNQRKS 297 >UniRef50_C7I043 Pseudouridine synthase n=4 Tax=Proteobacteria RepID=C7I043_THIIN Length = 562 Score = 247 bits (631), Expect = 4e-64, Method: Composition-based stats. Identities = 70/267 (26%), Positives = 131/267 (49%), Gaps = 9/267 (3%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPR- 62 + + +L+K +++SG+ SRRE + I G V +NG+ A +G ++ P D ++VNG++I+ R Sbjct: 169 EDAPKLHKVLAQSGVGSRREMEDLILAGRVSVNGEPAHLGQRILPTDQIRVNGKIIKRRL 228 Query: 63 EAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSK--RVFPIGRLDKDSQGLIFLTNH 119 ++A +KP G V + +D E R + + + + +GRLD +++GL+ T Sbjct: 229 RPAQARVLAYHKPTGEVVSFKDPEGRPTVFQHLPKLQGAKWTAVGRLDINTEGLLLFTTS 288 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK----KEAPF 175 GDL N+++ E+EY V V + + GV + + ++ + A Sbjct: 289 GDLANRLMHPSYGAEREYAVRVLGELDAAARDELLEGVQLGDGPARFLSLEEAGGEGANR 348 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDELIDLFK 234 +R+ + +G NR++RRM E G V +L R R +V L +G+ G++ +L + L Sbjct: 349 WWRVVISEGRNREVRRMFEAVGLTVSRLIRVRYASVVLPAGLRRGDFVELDKSLVQALQG 408 Query: 235 LIENSSSEVKPKAKAKPKTAGIKRPVV 261 + S + +P Sbjct: 409 RSGEAPSGAGDRPARRPNGQNQGGRRN 435 >UniRef50_C3BQR1 Pseudouridine synthase n=3 Tax=Bacillus RepID=C3BQR1_9BACI Length = 203 Score = 246 bits (630), Expect = 5e-64, Method: Composition-based stats. Identities = 102/202 (50%), Positives = 135/202 (66%), Gaps = 1/202 (0%) Query: 35 LNGKRATIGDQVKPGDVVKVNGQLIEPREAEDLVLIALNKPVGIVSTTEDGERDNIVDFV 94 +NG+ G V D+V ++G+ IE + E + IA +KPVGI T D NI++++ Sbjct: 3 INGEVCKHGTIVTENDIVMIDGKTIEKEDKE-KIYIAFHKPVGITCTAADHIDGNIIEYI 61 Query: 95 NHSKRVFPIGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMS 154 NH +R+FP+GRLDK S+GLI LTN G + N+IL +HEKEY+VTVDKP T+ FI GMS Sbjct: 62 NHPERIFPVGRLDKASEGLILLTNDGRIANQILHGDYEHEKEYIVTVDKPFTDWFIDGMS 121 Query: 155 AGVPILGTVTKKCKVKKEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS 214 GV I +TK+CKV + FRI L QG+NRQIRRM FGY V KL+R RIMN+ L Sbjct: 122 RGVKIKDGITKQCKVTRVNSSTFRIILTQGMNRQIRRMSRAFGYTVTKLKRVRIMNIKLD 181 Query: 215 GIPLGEWRDLTDDELIDLFKLI 236 G+ GEWR++T EL +L K + Sbjct: 182 GLEAGEWRNVTVQELQELLKQL 203 >UniRef50_B3DRY9 Pseudouridine synthase n=7 Tax=Bifidobacterium RepID=B3DRY9_BIFLD Length = 256 Score = 246 bits (630), Expect = 5e-64, Method: Composition-based stats. Identities = 75/245 (30%), Positives = 129/245 (52%), Gaps = 11/245 (4%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIE 60 +S+RL K ++++G SRR+ + I +G V ++G+ T +G +V P V+V+G + Sbjct: 14 DSNSIRLQKLLAQAGFGSRRKCEDMITEGRVEVDGELVTELGTRVDPHKQQVRVDGSRV- 72 Query: 61 PREAEDLVLIALNKPVGIVSTTEDG-ERDNIVDFV-NHSKRVFPIGRLDKDSQGLIFLTN 118 R + V +ALNKP ++S +D R + D V + +R+F +GRLD DS+GLI +TN Sbjct: 73 -RVNPNHVTLALNKPRKVLSAMDDPKGRYTLRDIVGDKYERIFHMGRLDYDSEGLILMTN 131 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGM-SAGVPILGTVTK----KCKVKKEA 173 G+L ++ + EK Y+ T++ I+ R + + GV + K Sbjct: 132 DGELSQHVMHPKYEVEKTYVATLEGKISGTVCRRLVTTGVQLDDGWIKLDHCAIIDSSRD 191 Query: 174 PFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF 233 + ++ L G NR +RR+ G+ VK+L RT+I + L + G +R L+ E+ L Sbjct: 192 HTMVKVVLHSGKNRIVRRIFGSIGFPVKRLVRTQIGPIKLGDLKPGSYRVLSQTEVRSLS 251 Query: 234 KLIEN 238 K + Sbjct: 252 KEVGL 256 >UniRef50_D0LG91 Pseudouridine synthase n=3 Tax=Bacteria RepID=D0LG91_HALO1 Length = 553 Score = 246 bits (630), Expect = 5e-64, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 135/247 (54%), Gaps = 13/247 (5%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEP 61 D ++RL +Y+S+ G+ +RR+A+ I G V +NG+R T +G +V PG D V V G+ + P Sbjct: 2 DEAIRLQRYLSQCGVAARRKAEELITSGVVSVNGQRVTELGTKVVPGRDRVSVRGEAVYP 61 Query: 62 REAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSK-RVFPIGRLDKDSQGLIFLTNH 119 E+ + LNKP G ++ D E R ++++++ RV P+GRLD S+G++ LTN Sbjct: 62 ---EEPFYVLLNKPKGCLTAVTDPENRPTVMEYLHGLPARVVPVGRLDFYSEGVLLLTND 118 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGT-VTKKCKVKKEAPF--- 175 GDL ++ + EK Y V V +TE + + GV + VT+ ++ Sbjct: 119 GDLSARLQSPRHHVEKTYHVKVRDQVTERHLEVLRQGVRLEDGTVTRPAQIDMLGGTKSR 178 Query: 176 --VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF 233 ITL +G +RQI RM GY V KL+R ++ G+ +G+ R+LT E+ DL Sbjct: 179 HDWLVITLTEGKSRQIHRMLGVLGYTVMKLQRVAFGGLTFHGLRVGDARELTQAEVNDLR 238 Query: 234 KLIENSS 240 +L+ Sbjct: 239 ELVGLPK 245 >UniRef50_Q38VQ0 Pseudouridine synthase n=6 Tax=Lactobacillus RepID=Q38VQ0_LACSS Length = 239 Score = 246 bits (630), Expect = 5e-64, Method: Composition-based stats. Identities = 61/243 (25%), Positives = 115/243 (47%), Gaps = 15/243 (6%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIG-DQVKPGDVVKVNGQLIEPREAE 65 +R+++++S + +R+ ++ G V + K QV P VV V+ + I + Sbjct: 1 MRIDRFLSHMNVGTRKTLKPLLKAGRVRVADKVIKEAKYQVTPETVVYVDDEPIRYQTN- 59 Query: 66 DLVLIALNKPVGIVSTTEDGERDNIVDFV---NHSKRVFPIGRLDKDSQGLIFLTNHGDL 122 LNKP G++S T D + ++D ++ + +FP+GRLDKD+ GL+ +TN GDL Sbjct: 60 --FYWLLNKPAGVISATTDPQ-KTVMDLFAPADYREDLFPVGRLDKDTTGLLLITNDGDL 116 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA------PFV 176 + +L K Y + +T +AG+ + + ++ + Sbjct: 117 AHDLLSPKKHVAKTYRAKIAGVVTAADQAQFAAGLKLRDFDAQPAQLTILRTDTARQESL 176 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDELIDLFKL 235 + + +G Q++RM G EV LER ++ +SL + + G++R LT E+ L + Sbjct: 177 IEVEIHEGKFHQVKRMFHAVGKEVLTLERIKMGPLSLPADLKRGQYRALTTTEIDALQRA 236 Query: 236 IEN 238 + Sbjct: 237 TQK 239 >UniRef50_Q042N1 Pseudouridine synthase n=3 Tax=Lactobacillus gasseri RepID=Q042N1_LACGA Length = 245 Score = 246 bits (630), Expect = 5e-64, Method: Composition-based stats. Identities = 68/239 (28%), Positives = 117/239 (48%), Gaps = 15/239 (6%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPR 62 D +R++KY++ + SR+E I++ V +NG+ T QVK D+V V+G I + Sbjct: 10 DIEMRIDKYLANMNVGSRKEVHSLIKKKVVTVNGELVTIPKQQVKETDLVAVDGNKIAYQ 69 Query: 63 EAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKR---VFPIGRLDKDSQGLIFLTNH 119 + LNKP G++S TED + ++ + R + P+GRLDKD+ GL+ LTN Sbjct: 70 QY---HYFLLNKPKGVISATEDRSQQTVISLLKTKDRYQGIAPVGRLDKDTTGLLLLTND 126 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI-LGTVTKKCKVKKE------ 172 G L +++L K Y + E + + G+ + GT K K+K Sbjct: 127 GALAHELLAPNKHVAKVYRAKIAGVPDPETAKKFAQGLILGDGTKLKPAKLKILKQDQDN 186 Query: 173 APFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDELI 230 I + +G QI+RM G +V +L+R + + L + + GE++++ E+ Sbjct: 187 NLSQIEIQIQEGKYHQIKRMFGAVGMKVLELDRVSMGKLHLPADLKRGEYKEIDLAEIK 245 >UniRef50_A8S8D3 Pseudouridine synthase n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8S8D3_9FIRM Length = 233 Score = 246 bits (628), Expect = 9e-64, Method: Composition-based stats. Identities = 83/236 (35%), Positives = 127/236 (53%), Gaps = 11/236 (4%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIG-DQVKPGDVVKVNGQLIEPREAE 65 +RL+KY++E+ C+R EA + +G V +NG G Q+K D V V+G L+ + Sbjct: 1 MRLDKYLAETAQCTRSEAKTMLAKGRVQVNGAVCKKGDTQLKDTDTVAVDGALL---TYQ 57 Query: 66 DLVLIALNKPVGIVSTTEDGERDNIVDFVNH---SKRVFPIGRLDKDSQGLIFLTNHGDL 122 V + LNKP G+VS + D +VD V + +FP GRLDK S G + LT+ G Sbjct: 58 KFVYLMLNKPEGVVSASTDKRDTTVVDLVGDAYPRRELFPAGRLDKTSTGFVLLTDDGGF 117 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI-LGTVTKKCKVKKEAPF--VFRI 179 + IL + K Y VT+D P+T+E G +AGV + GT +V +P R+ Sbjct: 118 AHDILSPRHHVSKTYTVTIDTPLTQEMCTGFAAGVTLADGTALSPAEVTALSPDGLTVRV 177 Query: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDLFK 234 L QG+ QI+RM +G V L R I ++L + G+WR+L+D+E+ + + Sbjct: 178 VLRQGVYHQIKRMFGVYGAGVNALHREAIGGLALDAQLAPGQWRELSDEEVAKITR 233 >UniRef50_D1R854 Pseudouridine synthase n=4 Tax=Chlamydiales RepID=D1R854_9CHLA Length = 261 Score = 246 bits (628), Expect = 1e-63, Method: Composition-based stats. Identities = 71/236 (30%), Positives = 125/236 (52%), Gaps = 5/236 (2%) Query: 2 LPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQ-VKPGDVVKVNGQLIE 60 + + RL+K ++ +G+ SRR + I G V +NG+ + V DV+ GQ + Sbjct: 28 MDKTKQRLSKVMAAAGVASRRACEMLIFDGCVTVNGEVTLVPQTLVDENDVITCKGQSVG 87 Query: 61 PREAEDLVLIALNKPVGIVSTTE-DGERDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTN 118 + ++ V LNKP+G + + + + + ++D + +R+F +GRLDKD+ GLI +TN Sbjct: 88 --KKQNKVYYILNKPIGYICSNKRNKDSKIVLDLFDTVEERLFTVGRLDKDTSGLIIVTN 145 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFR 178 G N+++ + KEYLV ++ + E + +S+G + T + +V K + Sbjct: 146 DGHFANRVIHPSANIHKEYLVKTNEEVEAEHLSALSSGTLVEKTFVRPIRVSKVRRGTLK 205 Query: 179 ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFK 234 IT+ +G R+IR + E V +L R RI + L + GEWR++T E LF+ Sbjct: 206 ITIAEGKKREIRLLMESAKLPVLELTRIRIGGLHLGPLQPGEWREMTAREQTLLFE 261 >UniRef50_C5CXG1 Pseudouridine synthase n=4 Tax=Comamonadaceae RepID=C5CXG1_VARPS Length = 604 Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 76/292 (26%), Positives = 143/292 (48%), Gaps = 11/292 (3%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPR 62 S +L+K ++++G+ SR E + I QG + +N + A IG +++ GD VK+NG+ I R Sbjct: 194 EADSPKLHKVLAQAGLGSRLEMEALILQGRISVNNEPAHIGQRIQYGDQVKINGKPIRYR 253 Query: 63 -EAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSK--RVFPIGRLDKDSQGLIFLTN 118 +IA +KPVG V T +D + R + + + + +GRLD +++GL+ ++ Sbjct: 254 IAPPPPRVIAYHKPVGEVVTHDDPQNRPTVFRKLPRLQQGKWQSVGRLDLNTEGLLLFSS 313 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKV----KKEAP 174 GDL N+++ E+EY V V + E + + GV + + + + + + Sbjct: 314 SGDLANQLMHPRFGLEREYAVRVLGALNAEEKKKLLEGVRLDDGMAQFGTIEEGGGEGSN 373 Query: 175 FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDLF 233 +R+T+ +G NR++RR+ E G+ V +L R R + L G+ G W +L + ++ LF Sbjct: 374 HWYRVTISEGRNREVRRLFESVGHAVSRLIRIRYGAMVLPRGLKRGAWMELDERDISALF 433 Query: 234 KLIENSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGR 285 + + +P + + +G R A G++ R Sbjct: 434 QA--SGGGAPRPPQQQRGPGQEGAGGGRNGRNKKRRGNRNAGGGQQQPRDMR 483 >UniRef50_D2MQD6 Pseudouridylate synthase n=1 Tax=Bulleidia extructa W1219 RepID=D2MQD6_9FIRM Length = 231 Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 67/232 (28%), Positives = 123/232 (53%), Gaps = 6/232 (2%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPG-DVVKVNGQLIEPREA 64 +RL++ ++ + + SR + ++ G V +NGK A V P DV++++ ++++ + Sbjct: 1 MRLDRVLANASVGSRTQVKNMVKNGRVSVNGKIALASSMMVDPNQDVIRIDDEILQYAKY 60 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVN 124 + + L KP G +S TE +++ V + K +FP GRLDKD++GL+ +TN G L + Sbjct: 61 Q---YLMLYKPAGYISATEGRYDPTVLELVPNYKGLFPCGRLDKDTEGLLLMTNDGRLAH 117 Query: 125 KILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQG 184 +L EKEY V P+++E + + G+ K K+K I L +G Sbjct: 118 NLLSPKKHVEKEYYVEHQLPLSQEDVLCIERGIRYKNITYKGAKLKILDDLQCTIILQEG 177 Query: 185 LNRQIRRMCEHFGYEVKKLERTRIMNVSLSG-IPLGEWRDLTDDELIDLFKL 235 +I+ + +V L+R R+ N+ L + GE+R L+++E+ DL +L Sbjct: 178 KYHEIKNIFLAIDNKVTYLKRIRMKNLILDETLKKGEYRPLSEEEIGDLKQL 229 >UniRef50_Q1H048 Pseudouridine synthase n=4 Tax=Betaproteobacteria RepID=Q1H048_METFK Length = 383 Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 74/291 (25%), Positives = 138/291 (47%), Gaps = 12/291 (4%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIE-PREA 64 RL+K ++ +G SRRE + I G + +NGK A +G V P DVV+++ + + P E Sbjct: 28 PQRLHKLLALAGFGSRREMETLIASGRITINGKTAEVGASVVPSDVVRLDSRPLRLPFEP 87 Query: 65 EDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSK--RVFPIGRLDKDSQGLIFLTNHGD 121 E ++ +KP G + + +D E R ++ D + + + IGRLD ++ GL+ T G+ Sbjct: 88 ELPQVLLYHKPEGEIVSHDDPENRASVFDKLPRIRNGKWIAIGRLDMNTSGLLIFTTSGE 147 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK----KEAPFVF 177 L N+ + + E+EY V + +TE + ++ G+ + ++ + A + Sbjct: 148 LANRFMHPRYEVEREYAVRIFGELTEGEMAQLTYGIELDDGPANFDSIRPQGGEGANHWY 207 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDLFKLI 236 + L +G NR++RR+ E F V +L R R V+L + G+ L E+ L + Sbjct: 208 EVILREGRNREVRRLFEAFQKPVSRLIRVRFGPVNLPPRLKRGQMIHLGAKEVTALLEWA 267 Query: 237 ENSSSEVKPKA---KAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPG 284 E + + P+ + K K + P + + + + +R T Sbjct: 268 ELAVPKAVPRQLSPREKEKLGKVFTPKARKSRFDPEAHLESRGPRRVTKAR 318 >UniRef50_Q1J642 Pseudouridine synthase n=51 Tax=Streptococcus RepID=Q1J642_STRPF Length = 244 Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 70/238 (29%), Positives = 120/238 (50%), Gaps = 15/238 (6%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIG-DQVKP-GDVVKVNGQLIEPREA 64 +RL+K++ +G+ +R + +++ +F+N K T + D+V G + Sbjct: 2 MRLDKFLVATGVGTRSQVKLLLKKKAIFVNQKVETSAKAHIDEYKDLVTYQGTPLV---Y 58 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKR---VFPIGRLDKDSQGLIFLTNHGD 121 E V LNKP G VS T+D ++ +++ ++ + R VFP+GRLDKD++GL+ LTN+G Sbjct: 59 ESFVYYLLNKPSGYVSATQDRQQATVMELLDDTARQKTVFPVGRLDKDTRGLLLLTNNGQ 118 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAP------F 175 L + +L KEYL V +TE + G+ + ++ A Sbjct: 119 LAHDLLSPKKHVTKEYLAKVAGIMTEADKDYFARGISLKDHQCLPAHLEVLASDLQQQTS 178 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDL 232 + +IT+ +G Q++RM G EV L+R + + L + GE+R LT +EL L Sbjct: 179 LVKITIQEGKFHQVKRMVAACGKEVLDLQRLSMGPLKLDPSLAEGEFRRLTPEELQSL 236 >UniRef50_Q4AAG8 Pseudouridine synthase n=6 Tax=Mycoplasma RepID=Q4AAG8_MYCHJ Length = 240 Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 77/237 (32%), Positives = 137/237 (57%), Gaps = 3/237 (1%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAE 65 +R+NK++SE G+CSRR++++ I QG + +N + A IG + DV++++ Q I + Sbjct: 3 KIRINKFLSEMGVCSRRQSEKLILQGRIKINNETAKIGQIISQNDVIELDQQKIT--KKP 60 Query: 66 DLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVN 124 + ALNKP +++ D E R I++F + ++ +FP+GRLD + GLI +TN G N Sbjct: 61 PIFWYALNKPKNYITSRFDPENRPTIMEFFSKNEYLFPVGRLDFQTTGLILITNDGKTTN 120 Query: 125 KILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQG 184 K+L + E+ YLV D ++++ IR ++ L +V K+KK + + +T+ QG Sbjct: 121 KLLHPSSKIERTYLVKTDFSLSDKEIRFLNDNKIQLDSVKSIQKIKKCSSRTYLVTVWQG 180 Query: 185 LNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSSS 241 N I+++ +V KL+R N+ L I G++R LT+ E+ L ++N++ Sbjct: 181 SNHHIKKLFLSISKKVLKLKRVSFANIKLDNISEGKYRKLTNQEIKSLENQVKNTTR 237 >UniRef50_Q0AS26 Pseudouridine synthase n=1 Tax=Maricaulis maris MCS10 RepID=Q0AS26_MARMM Length = 372 Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 80/290 (27%), Positives = 132/290 (45%), Gaps = 9/290 (3%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEPR 62 D+S R+ K+++ +G+ SRRE +R IE G V ++GK T +V + ++V+G+ IEP Sbjct: 6 DTSERIAKFLARAGVASRREVERMIEGGRVKVDGKTLDTPAFKVTGSEHIEVDGKRIEPP 65 Query: 63 EAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVN-HSKRVFPIGRLDKDSQGLIFLTNHG 120 A L +KP G+V+T D E R+ + D + RV IGRLD S+GL+ LTN G Sbjct: 66 AATK--LWRYHKPDGLVTTHADPEGRETVFDAIPKDIGRVISIGRLDLTSEGLLLLTNDG 123 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPF----V 176 L + + Y I+E ++ + AGV + G +V+ E Sbjct: 124 ALARALELPSTGWTRRYRARAFGSISESALKILRAGVTVEGIKYGPMEVEVERETGSNIW 183 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLI 236 + + +G NR++R+ + G V +L R L + GE + + L D + Sbjct: 184 LEVGIREGKNREVRKALDAVGLRVNRLIRIAYGPFQLGQLEKGEIKSVPSRVLHDQCGHL 243 Query: 237 ENSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRK 286 + +A AKP+ A + + G R + P R+ Sbjct: 244 IDMGDTPTGQAIAKPRPANRAARKPGQKPDGKPGQRAMGGPGQPGLPKRE 293 >UniRef50_Q47QM5 Pseudouridine synthase n=3 Tax=Actinomycetales RepID=Q47QM5_THEFY Length = 375 Score = 245 bits (626), Expect = 1e-63, Method: Composition-based stats. Identities = 76/244 (31%), Positives = 121/244 (49%), Gaps = 13/244 (5%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATI-GDQVKPG-DVVKVNGQLIEPR 62 +RL K ++++G+ SRR + I G V ++G+ G +V P ++V+G + Sbjct: 133 GGIRLQKALAQAGVASRRACEELIAAGRVSVDGQIVRRFGARVDPEKSEIRVDGMRV--V 190 Query: 63 EAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFV----NHSKRVFPIGRLDKDSQGLIFLT 117 +++L ALNKP G+VST D E R I D+ +R+F +GRLD D++GLI LT Sbjct: 191 TSQNLRYYALNKPRGVVSTMFDPEGRPTIGDYAAQIGPIEERLFHVGRLDTDTEGLILLT 250 Query: 118 NHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAP--- 174 N G+L N++ K YL V P+ + IR + GV + K + Sbjct: 251 NDGELANRLTHPRYKVTKTYLAKVPGPVPRDVIRQIRKGVELDDGFVKVDSFRVIDNIEP 310 Query: 175 -FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF 233 + I L +G +RR+ + G+ V L RT+I V L+ + G R LT E+ +L+ Sbjct: 311 KALVEIRLHEGRKHIVRRLMKAVGHPVSDLARTQIGPVGLNNLKSGTIRALTSQEVSELY 370 Query: 234 KLIE 237 Sbjct: 371 TAAG 374 >UniRef50_B0B8U9 Pseudouridine synthase n=10 Tax=Chlamydiales RepID=B0B8U9_CHLT2 Length = 241 Score = 245 bits (626), Expect = 1e-63, Method: Composition-based stats. Identities = 81/232 (34%), Positives = 131/232 (56%), Gaps = 8/232 (3%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEPR 62 + VRLNK+++ +G+ SRR+ D I G+V +NG+ AT V D V+V GQ I Sbjct: 2 AKVRLNKFLASAGVASRRKCDEIIFAGSVTVNGRVATGPFVTVDEEFDSVEVGGQRI--- 58 Query: 63 EAEDLVLIALNKPVGIVSTTED--GERDNIVDFVNHSK-RVFPIGRLDKDSQGLIFLTNH 119 AE V ++KP+G + ++E ++D ++H R+F +GRLDK++ GLI +TN Sbjct: 59 GAEKKVYFMVHKPLGYLCSSERKFPGSKLVIDLLSHCPYRLFTVGRLDKETSGLILVTND 118 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRI 179 G+ N+++ KEYL+ V + +T + + AG I G V + VKK +I Sbjct: 119 GEFANRVIHPSFGITKEYLLKVSRDVTARDLETLMAGTVIDGKVVRPVSVKKVRRGTIKI 178 Query: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELID 231 + +G +IR E G ++ +L+R RI ++ L G+P G++R+LTD EL Sbjct: 179 IVNEGKKHEIRLFAEAAGLQLLELKRIRIGSLVLGGLPYGKYRELTDSELDS 230 >UniRef50_C7LZX4 Pseudouridine synthase n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LZX4_ACIFD Length = 254 Score = 245 bits (626), Expect = 1e-63, Method: Composition-based stats. Identities = 90/241 (37%), Positives = 129/241 (53%), Gaps = 4/241 (1%) Query: 2 LPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPG-DVVKVNGQLIE 60 + SV+++ ++ +G SRR + I G V +NG+ ATIG +V+PG D V+ +G +E Sbjct: 1 MSAESVKVHVLLARAGCGSRRVLEDAIRDGRVRINGEVATIGARVRPGVDRVEFDG--LE 58 Query: 61 PREAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNH 119 E LNKP G+VS+ D E R + V + RV+P+GRLD DS+GL+ LTN Sbjct: 59 IATEEQREYWLLNKPRGVVSSVVDPEGRPTVRSLVATTSRVYPVGRLDVDSEGLLILTND 118 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRI 179 G L ++ KEYLV VD+P+ R + GV + G + + V P + RI Sbjct: 119 GPLTYQLTHPRFHVPKEYLVWVDRPVPRRLGRELREGVEVDGELLRASSVGTVGPRLVRI 178 Query: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENS 239 L +G NRQIRRM G V++L R RI + +P G R L EL L + I + Sbjct: 179 VLTEGRNRQIRRMVGAVGLSVERLVRVRIGPLVDPHLPPGVARRLEPRELARLRRAIGAA 238 Query: 240 S 240 S Sbjct: 239 S 239 >UniRef50_C8P302 Pseudouridine synthase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P302_ERYRH Length = 229 Score = 245 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 55/232 (23%), Positives = 113/232 (48%), Gaps = 7/232 (3%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVK--PGDVVKVNGQLIEPREA 64 +RL+K+++ +G +R++ +++G V +N V D V V G+ + Sbjct: 1 MRLDKFLAHNGFGTRKDVKILVKKGMVTVNHDVVRDAGMVLNLEKDEVFVKGESVS---Y 57 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKR-VFPIGRLDKDSQGLIFLTNHGDLV 123 + + +NKP G + ++++ + R + +GRLD D++GL+ +TN G Sbjct: 58 QKDIYFMMNKPAGYICEHNPEMYPSVLELIESYHRDLVFVGRLDADTEGLLLITNDGQFS 117 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQ 183 +++ + ++ K+Y V +DKP F + G+ + + K +V+ +T+ + Sbjct: 118 HRVAHSKSNVHKQYYVELDKPFDLRFCEELEKGMMLGDELLKPAQVEVVGERAIHLTIGE 177 Query: 184 GLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDLFK 234 G Q++RM EV L+R +I + L + G +RDL+++E+ K Sbjct: 178 GKYHQVKRMMHACDNEVTYLKRIKIGALELDSSLQPGAYRDLSEEEINLFIK 229 >UniRef50_D1AL84 Pseudouridine synthase n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AL84_SEBTE Length = 233 Score = 245 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 71/235 (30%), Positives = 124/235 (52%), Gaps = 9/235 (3%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIG-DQVKP-GDVVKVNGQLIEPREA 64 +R++K+++ SGI +R+E +++ + +N + T + D V +G+ I E Sbjct: 1 MRIDKFLANSGIGTRKEVKELLKKKRISVNDEVVTEAKTHIDEDNDFVAFDGKRI---EF 57 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNHS---KRVFPIGRLDKDSQGLIFLTNHGD 121 ++ + I LNKP ++S T+D ++D + +FP+GRLDKD++GL+ LTN G Sbjct: 58 KEFLYIMLNKPQDVISATDDERHRTVLDLLEEPLTKVGLFPVGRLDKDTEGLLVLTNDGK 117 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITL 181 + +++L K Y V + K +++E + GV + TK KV+ I + Sbjct: 118 MAHELLSPKKHVPKRYYVELKKTLSKEEAAILENGVELETFTTKPAKVEFITEDKVYIII 177 Query: 182 VQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDLFKL 235 +G Q++RM + G V L+RT + N+ L + GE+R+LT DEL L L Sbjct: 178 SEGKYHQVKRMFKCVGNRVLFLKRTGMGNLGLDENLAPGEYRELTSDELEQLQGL 232 >UniRef50_C5WHE9 Pseudouridine synthase n=3 Tax=Lactobacillales RepID=C5WHE9_STRDG Length = 245 Score = 245 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 73/240 (30%), Positives = 124/240 (51%), Gaps = 17/240 (7%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPG---DVVKVNGQLIEPR 62 ++RL+K++ E+G+ SR + +++ + +N + T +V+ DVV G+ + Sbjct: 2 TMRLDKFLVETGVGSRSQVKSLLKKKAILVNQEVETSP-KVQINEHKDVVTYLGKPL--- 57 Query: 63 EAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKR---VFPIGRLDKDSQGLIFLTNH 119 E V LNKP G +S T+D + ++D ++ + R VFP+GRLDKD++GL+ LTN+ Sbjct: 58 TYEAFVYYILNKPAGFLSATKDRAQATVIDLLDETARQKDVFPVGRLDKDTRGLLLLTNN 117 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAP----- 174 G L + +L KEYL V +T+ + G+ + K++ Sbjct: 118 GQLAHDLLSPKKHVTKEYLAKVAGIMTDADKDDFAKGISLKDHQCLPAKLEVLDKDLSQE 177 Query: 175 -FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDL 232 V IT+ +G Q++RM G EV +L+R + + L G+ G++R LT DEL L Sbjct: 178 TCVVSITIQEGKFHQVKRMVAACGKEVLELQRLSMGPLRLDPGLAEGDFRRLTSDELQSL 237 >UniRef50_C9LMF3 Ribosomal small subunit pseudouridine synthase A n=1 Tax=Dialister invisus DSM 15470 RepID=C9LMF3_9FIRM Length = 277 Score = 245 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 72/263 (27%), Positives = 118/263 (44%), Gaps = 34/263 (12%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEP 61 + +RL+K++S+ + +R E R I +G V +NG++ T G V D + G+ + Sbjct: 14 EEDVMRLDKFLSDMNMGTRTELKRDIRKGAVQVNGEKITDPGFMVNENDEIIFAGEPVPY 73 Query: 62 REAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKR--VFPIGRLDKDSQGLIFLTNH 119 E LNKP G+++ TED + ++DF +R + P+GRLDKD+ GL+ +TN Sbjct: 74 FRYE---YYMLNKPAGVITATEDRYQKTVLDFFGERRRKDLSPVGRLDKDTVGLLLVTND 130 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTK-KCKVKKEAP---- 174 G +++L +KEY +D + E G+ + T K+ + Sbjct: 131 GGFHHRLLSPKKHIDKEYYARIDGRVDEADREKFEKGIYVDEIFTALPAKLMIDGYRENA 190 Query: 175 ----------------------FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVS 212 R+ + +G QI+RM G EV L+R RI +V Sbjct: 191 LESDFMDLANSRAPKSALENGVSEIRVVVQEGKFHQIKRMFHALGKEVIYLKRIRIGSVV 250 Query: 213 LS-GIPLGEWRDLTDDELIDLFK 234 L + G +R LT E+ L K Sbjct: 251 LDPTLEEGTYRRLTAGEVAALEK 273 >UniRef50_A7HC79 Pseudouridine synthase n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HC79_ANADF Length = 354 Score = 244 bits (624), Expect = 2e-63, Method: Composition-based stats. Identities = 77/294 (26%), Positives = 136/294 (46%), Gaps = 10/294 (3%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEPR 62 VRL KY++E+G+ SRR+A+ I G V +N + T +G +V P D+V V+G+L+ Sbjct: 10 DGVRLQKYLAEAGVASRRKAEELILAGRVKVNARAVTVLGSKVDPARDLVTVDGRLVS-- 67 Query: 63 EAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTNHG 120 +E L KP G V+T D E R ++++ +RVF +GRLD D++G + T+ G Sbjct: 68 RSETRSYYLLYKPPGCVTTASDPEGRPTALEYLRGVKERVFSVGRLDFDAEGAVLFTDDG 127 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKV----KKEAPFV 176 +L N++ H + YLV V + + AGV + + + + E Sbjct: 128 ELANRLAHPRYGHRRTYLVKVRGEPPPAALERLVAGVRLEDGPARALEAVPHERAERNVW 187 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLI 236 R+ + +G ++R+CE G +V++L R +++ G+ G++R L E+ L + Sbjct: 188 IRVVVGEGRFHLVKRLCEAVGLQVQRLYRPEFGGITVEGLRPGQFRPLAPVEVRALKTAV 247 Query: 237 ENSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKGR 290 + + P+ A R G+ G++ R Sbjct: 248 GLAGGAPAVAPRELPRAARRHGHGPPAPPELAPARREGERGEPGRREGKELPPR 301 >UniRef50_C2KPR0 Pseudouridine synthase n=3 Tax=Mobiluncus RepID=C2KPR0_9ACTO Length = 278 Score = 244 bits (624), Expect = 2e-63, Method: Composition-based stats. Identities = 82/244 (33%), Positives = 131/244 (53%), Gaps = 9/244 (3%) Query: 2 LPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIE 60 +P+ VRL K +S++G+ SRR ++ I++G V ++G+ T +G +V P + VNGQ I Sbjct: 37 IPEEPVRLQKLLSQAGVASRRASEDLIKRGRVQVDGETVTEMGLKVLPSARITVNGQRIH 96 Query: 61 PREAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTN 118 A L + A NKPVG VST + + R + D+ +RVF +GRLD + GLI LTN Sbjct: 97 TDAA--LQVWAFNKPVGTVSTMQPEDDRPCLGDWATKLPQRVFHVGRLDVATAGLILLTN 154 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK----KEAP 174 +GDL N+++ + K Y+ V + + + GV + VTK K + Sbjct: 155 NGDLANRLVHPRYEVPKTYVAMVQGQVKPGLGKVLRRGVELEDGVTKVDTFKLVEVRRGS 214 Query: 175 FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFK 234 + ++TL G NR +RR+ G+ V L RT I + L + G +R LT +L+ L + Sbjct: 215 SIVQLTLHSGKNRVVRRLLSEVGHPVSALTRTAIGTLRLGDLKEGHFRLLTGSDLVKLQE 274 Query: 235 LIEN 238 ++ Sbjct: 275 MVGL 278 >UniRef50_A8U325 Pseudouridine synthase n=1 Tax=alpha proteobacterium BAL199 RepID=A8U325_9PROT Length = 387 Score = 244 bits (624), Expect = 2e-63, Method: Composition-based stats. Identities = 85/295 (28%), Positives = 134/295 (45%), Gaps = 14/295 (4%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPRE 63 S R++K ++ +G+CSRR+A+R+I +G V ++G T V V+ V+ + + E Sbjct: 7 GSERISKRLARAGLCSRRDAERWIAEGRVKVDGVMLTSPAVNVDDDSVILVDEKPLP--E 64 Query: 64 AEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVN-HSKRVFPIGRLDKDSQGLIFLTNHGD 121 E L +KP G+V++ D E R + D + RV +GRLD DS+GL+ LTN G Sbjct: 65 IEPPRLWRYHKPDGLVTSNRDPEGRSTVFDRLPKDLPRVVTVGRLDIDSEGLLLLTNDGG 124 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKK----EAPFVF 177 L + + Y V V P+ E + + GV I G +V Sbjct: 125 LARYLELPSTGWVRRYRVRVFGPLDEAKLDNLKKGVRIEGVEYGPIEVTIDKATRTNSWL 184 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIE 237 + L +G NR+IRR+ EH G V +L RT L +P G ++ L + Sbjct: 185 TVALREGKNREIRRVMEHVGLTVSRLIRTTYGPFQLGEVPPGGVEEIKR---RVLKDQLG 241 Query: 238 NSSSEVKPKAKAKPKTAGIKRPVVKME--KTAEKGGRPASNGKRFTSPGRKKKGR 290 + + AKAKP+ G + P + + K R +S GR ++ R Sbjct: 242 LAKGDDSGHAKAKPERTGTQPPGRRPGTLRLRSKPTDIEVESDRPSSGGRVQRTR 296 >UniRef50_Q140U9 Pseudouridine synthase n=80 Tax=Proteobacteria RepID=Q140U9_BURXL Length = 633 Score = 244 bits (623), Expect = 3e-63, Method: Composition-based stats. Identities = 73/266 (27%), Positives = 134/266 (50%), Gaps = 9/266 (3%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPR 62 D + +L+K ++E+G+ SRR+ + I G V +NG+ A IG ++ P D V++NG+ ++ + Sbjct: 213 DDDAPKLHKVLAEAGMGSRRDMEELIVAGRVSVNGEPAHIGQRIMPTDQVRINGKPVKRK 272 Query: 63 EA-EDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSK--RVFPIGRLDKDSQGLIFLTN 118 A + ++ +KP G + + D E R ++ D + K + +GRLD +++GL+ LT Sbjct: 273 LASKPPRVLLYHKPTGEIVSHADPEGRPSVFDKLPPMKTAKWLAVGRLDFNTEGLLMLTT 332 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA----P 174 GDL N+ + E+EY V V + E + + GV + +++ Sbjct: 333 SGDLANRFMHPRYSVEREYAVRVVGELAEGMRQKLLHGVELDDGPANFLRIRDGGGEGTN 392 Query: 175 FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDELIDLF 233 + + L +G NR++RRM E G V +L RTR +SL G+ G W +L D+++ L Sbjct: 393 HWYHVALAEGRNREVRRMFEAAGLMVSRLIRTRHGPISLPKGLKRGRWEELEDNQVRALM 452 Query: 234 KLIENSSSEVKPKAKAKPKTAGIKRP 259 + + + ++ P Sbjct: 453 ASVGLKAPTEERGSRNAAPERKQPDP 478 >UniRef50_C2KV26 Pseudouridylate synthase n=1 Tax=Oribacterium sinus F0268 RepID=C2KV26_9FIRM Length = 239 Score = 244 bits (623), Expect = 3e-63, Method: Composition-based stats. Identities = 72/240 (30%), Positives = 126/240 (52%), Gaps = 15/240 (6%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGD-VVKVNGQLIEPREA 64 +RL+KY+S+ G+ SR R I +G V +NG+ +V+PG+ + + I Sbjct: 1 MRLDKYLSDMGVESRSVLKREIRKGLVKINGEIVKDPSMEVQPGNSEIVYKDEPI---HY 57 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKR--VFPIGRLDKDSQGLIFLTNHGDL 122 E+ +NKPVG++S+TED ++ ++D + R +FP+GRLDKDS+GL+ + N G L Sbjct: 58 EEFSYYMMNKPVGVLSSTEDRKQKTVLDLFSDKHRKDLFPVGRLDKDSEGLLLIMNDGAL 117 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPIL-GTVTKKCKVKKEAPF----VF 177 +K+L EK+YLV + I+EE + + G+ + K + + Sbjct: 118 AHKLLSPKMHIEKKYLVEIPGKISEEELDRLRQGIQYDTDLIAMPAKARCLSSTEEGSRV 177 Query: 178 RITLVQGLNRQIRRMCEHF--GYEVKKLERTRIMNVSLSG-IPLGEWRDLTDDELIDLFK 234 + +++G QI++M Y V KL+R + + L + GE+R L+++E+ L Sbjct: 178 EVIIMEGKFHQIKKMFLALSTDYVVTKLQRLSMGPLHLDPALAPGEYRKLSEEEVQALKN 237 >UniRef50_B0VG32 Pseudouridine synthase n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VG32_9BACT Length = 279 Score = 244 bits (623), Expect = 3e-63, Method: Composition-based stats. Identities = 75/242 (30%), Positives = 127/242 (52%), Gaps = 10/242 (4%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPG-DVVKVNGQLIEPRE 63 ++RLN+Y+++ G+ SRR+ + +I G + +NG + Q+ PG D V ++G+ I+P Sbjct: 39 TLRLNRYLADCGLGSRRKVEEFITTGRIAVNGNLVQDLSRQIIPGKDKVTLDGKPIQP-- 96 Query: 64 AEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHS-KRVFPIGRLDKDSQGLIFLTNHGD 121 A++ + LNKP G V + D R + + K++ GRLDK+S+GL+F TN Sbjct: 97 AKEKFYLILNKPRGYVVSQNDELGRKTVYSLLPPKGKQLAYAGRLDKESEGLLFFTNDTA 156 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPF----VF 177 L+N + N EK Y V +++P+ + + GV I G T + ++ Sbjct: 157 LINLLTHPKNKVEKVYRVDINRPLNNMELNMLRKGVEIEGGKTLPAGIFVKSKNANGMTL 216 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIE 237 +I + +G RQIR+M E G +V L+R + + L +P+G WR L E+ L L + Sbjct: 217 KIVITEGRKRQIRQMIEAVGAKVTYLKRLQFGPLKLKDLPVGRWRLLEPGEVKALLSLKK 276 Query: 238 NS 239 Sbjct: 277 EK 278 >UniRef50_UPI0001BC345F ribosomal large subunit pseudouridine synthase F n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=UPI0001BC345F Length = 240 Score = 244 bits (623), Expect = 3e-63, Method: Composition-based stats. Identities = 102/240 (42%), Positives = 152/240 (63%), Gaps = 8/240 (3%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREA 64 +R+NKYIS+SG+CSRR AD+ I +G+V +NG A G +V D+V+++ +I Sbjct: 2 EEIRINKYISKSGVCSRRAADKLINEGHVTINGVVAETGSKVTEKDIVRIDDDIINLI-- 59 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVN 124 +D+ + A KPVG +S+ D + I F+ +FP+GRLDKDS+GL+ +TN G+L+N Sbjct: 60 KDIKVYAFYKPVGYISSLSDEQGTGIASFLPQGMGLFPVGRLDKDSEGLMLITNDGNLMN 119 Query: 125 KILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGT------VTKKCKVKKEAPFVFR 178 +IL A N HEKEY+VT + +F+ M+ GVPI +T CK + F+ Sbjct: 120 EILNASNGHEKEYIVTTRQKFNNDFLVKMAKGVPITNRATGKKIITAPCKTEALEDNSFK 179 Query: 179 ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIEN 238 IT++QGLNRQIRRMC +F +V L+R RIMN+ L + GE ++L+ ELI L +++E Sbjct: 180 ITIIQGLNRQIRRMCGYFDIDVVSLKRVRIMNIMLGNMRPGELKELSQSELIKLRRMLEK 239 >UniRef50_A5TW76 Pseudouridine synthase n=11 Tax=Fusobacterium RepID=A5TW76_FUSNP Length = 226 Score = 244 bits (623), Expect = 4e-63, Method: Composition-based stats. Identities = 63/228 (27%), Positives = 123/228 (53%), Gaps = 8/228 (3%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNG-KRATIGDQVKPG-DVVKVNGQLIEPREA 64 +RL+K++ E GI SR+E + I + +NG + D + D+++ NG+ + E Sbjct: 1 MRLDKFLVECGIGSRKEVKKLISNDEITVNGFNDISAKDNIDENSDIIEYNGEKL---EY 57 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNH---SKRVFPIGRLDKDSQGLIFLTNHGD 121 ++ +NK G ++ TED + + ++D + K + P+GRLDKD++GL+ TN G Sbjct: 58 KEFRYYIMNKKAGYITATEDFKENTVMDLLPEWVIRKDLAPVGRLDKDTEGLLLFTNDGK 117 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITL 181 L +++L N +K Y + ++ I ++ I + GV I +T+ KV+K + +T+ Sbjct: 118 LNHRLLSPKNHIDKVYYIEIENNILDKDILKLEQGVDIGNYITQPAKVEKISDNKIYLTI 177 Query: 182 VQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDEL 229 +G Q+++M E +V L+R + L + LGE +++ +++ Sbjct: 178 KEGKFHQVKKMLEAVNNKVCYLKRVSFGKLKLDDLALGEVKEVNLEDI 225 >UniRef50_UPI0001C37AA4 16s pseudouridylate synthase n=2 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37AA4 Length = 255 Score = 244 bits (623), Expect = 4e-63, Method: Composition-based stats. Identities = 72/240 (30%), Positives = 119/240 (49%), Gaps = 12/240 (5%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIG-DQVKPG-DVVKVNGQLIEPREA 64 +RL+K+ISE +R + +G+V +NG ++ G D V V G I + Sbjct: 4 IRLDKFISERTEYTRSQIKSLCAKGSVTVNGSPVKRSDTKIDTGADDVTVCGNAIS---S 60 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKR---VFPIGRLDKDSQGLIFLTNHGD 121 E I LNKP G VS+T+D + + ++ V R +FP GRLDKDS G + +T+ G Sbjct: 61 ERFRYILLNKPKGYVSSTDDKDGETVIKLVPPEMRSKGLFPAGRLDKDSTGALLITDDGA 120 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI-LGTVTKKCKVKKEAP--FVFR 178 L ++I N K Y + +P +E++ + G+ + G CKV+K + Sbjct: 121 LAHRICSPNNHISKIYAAELSRPFEQEYVEKFAKGIVLANGEACSPCKVQKAENADNLAF 180 Query: 179 ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDELIDLFKLIE 237 + L +G+ Q++RM G V+ L+R I + L +PLG+ L ++ +F I+ Sbjct: 181 VELHEGMYHQVKRMFAAVGNHVENLKRISIGGLILPKDLPLGKCMYLLPKDIEQMFTKID 240 >UniRef50_A1U6Q2 Pseudouridine synthase n=4 Tax=Gammaproteobacteria RepID=A1U6Q2_MARAV Length = 231 Score = 243 bits (622), Expect = 4e-63, Method: Composition-based stats. Identities = 65/231 (28%), Positives = 116/231 (50%), Gaps = 9/231 (3%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIG-DQVKPGDVVKVNGQLIEPREAE 65 +RL++Y+S SR+EA + + G V ++G+ QV+ V ++G+ + P Sbjct: 1 MRLDQYLSNGTELSRKEAKKVVSAGRVKVDGETCRQANRQVEAEQSVHLDGKPVNPPG-- 58 Query: 66 DLVLIALNKPVGIVSTTEDGERDNIVDFVNH--SKRVFPIGRLDKDSQGLIFLTNHGDLV 123 + + ++KP G++S T D + +D + + RV GRLDKD+ GL+ LT+ G Sbjct: 59 -DIYLMMHKPAGVLSATTDSSQPTALDLLPRGLASRVHIAGRLDKDTTGLLLLTSDGQWS 117 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTV--TKKCKVKKEAPFVFRITL 181 + + + K Y V + + I E+ R + GV + G T+ +V+ + +T+ Sbjct: 118 HAVTSPRRECRKSYRVWLAEAIPEQACRALEKGVMLNGETTETRPAEVRVHNNQLIDLTI 177 Query: 182 VQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSG-IPLGEWRDLTDDELID 231 +G Q++RM G V+ L R RI ++ L + GE+R LT E+ Sbjct: 178 GEGRYHQVKRMLAAVGNRVEALHRFRIGSIELDDKLAPGEFRALTYQEIRS 228 >UniRef50_A1K7C2 Pseudouridine synthase n=1 Tax=Azoarcus sp. BH72 RepID=A1K7C2_AZOSB Length = 356 Score = 243 bits (621), Expect = 5e-63, Method: Composition-based stats. Identities = 72/269 (26%), Positives = 131/269 (48%), Gaps = 10/269 (3%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREA 64 RL K ++++G+ SRRE + + G + +NG A++G ++ PGD VK+NG+LI R + Sbjct: 89 EPERLQKVLAQAGVASRREIEELVVAGRISVNGLPASLGQKIGPGDRVKLNGKLIPLRFS 148 Query: 65 ED-LVLIALNKPVGIVSTTEDGE-RDNIVDFVN--HSKRVFPIGRLDKDSQGLIFLTNHG 120 + ++ +KP G + + +D E R + + + R +GRLD ++ GL+ TN G Sbjct: 149 QRSPRVLVYHKPEGEIVSRDDPEGRPTVFERLPLLRKGRWLAVGRLDFNTSGLLLFTNDG 208 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA----PFV 176 DL N+++ + +EY V + +TEE + + G+ + + + Sbjct: 209 DLANRLMHPRYELTREYAVRLLGQLTEEQGQSLVDGIQLEDGPARFLSLVDAGGEGVNHW 268 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDELIDLFKL 235 +R+TL +G NR++RRM E G V +L R R V L + + G W +L + + L L Sbjct: 269 YRVTLAEGRNREVRRMFEAVGLTVSRLMRVRYGPVELPARLKRGMWMELPEADACALAGL 328 Query: 236 IENSSSEVKPKAKAKPKTAGIKRPVVKME 264 + + + K + + Sbjct: 329 -PPPRVDPSARGARREKAPRLHHTLPHER 356 >UniRef50_D1PIW4 Pseudouridine synthase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIW4_9FIRM Length = 237 Score = 243 bits (621), Expect = 5e-63, Method: Composition-based stats. Identities = 85/236 (36%), Positives = 127/236 (53%), Gaps = 9/236 (3%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIG-DQVKPGDVVKVNGQLIEPREAE 65 +RL+KY+SE +R E+ + I +G V +NG QV + V+G + + Sbjct: 2 MRLDKYLSERTGLTRSESRKAITKGRVAVNGMVCRKADTQVAEDAAIAVDGTPLAG-SYQ 60 Query: 66 DLVLIALNKPVGIVSTTEDGERDNIVDFV--NHSKR-VFPIGRLDKDSQGLIFLTNHGDL 122 V I LNKP G+VS + D +VD V + +R +FP GRLDK S G + LT+ G L Sbjct: 61 KYVYIMLNKPEGVVSASRDKRDTTVVDLVAADFPRRALFPAGRLDKTSTGFVLLTDDGAL 120 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVT-KKCKVK--KEAPFVFRI 179 + +L + +K+YLVT+D P+T+ G +AGV + T + + E P V ++ Sbjct: 121 AHDLLSPAHHVDKQYLVTLDTPLTDAMRAGFAAGVTLADGETMAPAEAEPAGEDPCVVKV 180 Query: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDLFK 234 TL QG+ QI+RM +G V L R I V+L + G+WR+LT +EL L K Sbjct: 181 TLHQGVYHQIKRMFGVYGAGVNALHRYAIGGVALDAALAPGQWRELTAEELALLQK 236 >UniRef50_Q87NB7 Ribosomal large subunit pseudouridine synthase B n=17 Tax=Bacteria RepID=RLUB_VIBPA Length = 312 Score = 243 bits (620), Expect = 7e-63, Method: Composition-based stats. Identities = 80/305 (26%), Positives = 151/305 (49%), Gaps = 26/305 (8%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQV-KPGDVVKVNGQLIEPREA 64 S +L K ++ +G SRRE + I+ G V +NG A +G+++ VV+++G ++ + Sbjct: 2 SEKLQKVLARAGHGSRREIESLIKSGRVSVNGVVAKLGERLEDESSVVRIDGHIVSAKVQ 61 Query: 65 EDLV--LIALNKPVGIVSTTEDGE-RDNIVDFVNHSK--RVFPIGRLDKDSQGLIFLTNH 119 E+++ ++A KP G + T D E R + D + + R +GRLD ++ GL+ T Sbjct: 62 EEVICRVLAYYKPEGELCTRHDPEGRRTVFDRLPKIRGSRWISVGRLDANTSGLLLFTTD 121 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA----PF 175 G+L N+++ E+EYLV V +TE+ +R + GV + + + V Sbjct: 122 GELANRLMHPSRQVEREYLVRVFGEVTEQKVRNLVKGVELEDGLARFEDVVYAGGEGMNH 181 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDLFK 234 F + + +G NR++RR+ E V +L+R R ++ L +P G W +L E+ L + Sbjct: 182 TFYVVINEGRNREVRRLWESQECTVSRLKRVRYGDIFLDKKLPRGGWMELDLKEVNYLRE 241 Query: 235 LIENSS---------SEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGR 285 L+E + + + + ++ I+R V + E R +++ R +P R Sbjct: 242 LVELRPEKETMLDLSKDNTSRKRERARSQKIRRAVKRHE------ERVSTSKGRSNNPAR 295 Query: 286 KKKGR 290 +K + Sbjct: 296 RKPKK 300 >UniRef50_B9XS61 Pseudouridine synthase n=1 Tax=bacterium Ellin514 RepID=B9XS61_9BACT Length = 235 Score = 242 bits (619), Expect = 8e-63, Method: Composition-based stats. Identities = 75/237 (31%), Positives = 125/237 (52%), Gaps = 11/237 (4%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKP-GDVVKVNGQLIEPREA 64 VRL K+++E+G+ SRR ++R I G V +NG +G +V P D + ++G + Sbjct: 2 VRLQKFLAEAGVASRRASERIILGGRVSVNGDTVRELGTKVDPIHDSIALDGAPLRL--- 58 Query: 65 EDLVLIALNKPVGIVSTT-EDGERDNIVDFVN-HSKRVFPIGRLDKDSQGLIFLTNHGDL 122 + + +ALNKP G V + +D +R I D + ++ +GRLD DS+GLIFLTN G+ Sbjct: 59 KRKLYVALNKPRGYVCSRKDDRKRKVIGDLLPAEWDNLYSVGRLDSDSEGLIFLTNDGEF 118 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK----KEAPFVFR 178 + K+YL TV+ + +E ++ G+ G K + + + + + Sbjct: 119 SLHLTHPRYRVLKKYLATVEGRVEQEMLQRFKHGIVHEGEKLKVDRARTLSVQNSTSLVE 178 Query: 179 ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 + L +G NR+IRR+ E G V +L R +I + L + G+WR LT+ E+ L Sbjct: 179 LELTEGKNREIRRLFESQGLTVSRLVRMQIGKIKLGELRSGKWRMLTEAEIKSLLSQ 235 >UniRef50_D0J9Y2 Pseudouridine synthase n=1 Tax=Blattabacterium sp. (Periplaneta americana) str. BPLAN RepID=D0J9Y2_BLASP Length = 255 Score = 242 bits (619), Expect = 8e-63, Method: Composition-based stats. Identities = 75/233 (32%), Positives = 125/233 (53%), Gaps = 8/233 (3%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATI-GDQVKPGDVVKVNGQLIEP 61 + +RLN Y+S +GI SRREAD+ I+ G + +NGK T G V DV+K +G I+ Sbjct: 12 EEKFIRLNHYLSNAGITSRREADKLIQSGLIEVNGKIVTKFGTVVHKNDVIKFHGSRIK- 70 Query: 62 REAEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNH--SKRVFPIGRLDKDSQGLIFLTN 118 + + I LNKP G +++T D R +++ + + + R++P+GRLD+ + G++ LTN Sbjct: 71 --NKKKIYILLNKPKGYITSTRDPFNRKTVMNLIPNFQNYRIYPVGRLDRLTTGVLLLTN 128 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAG-VPILGTVTKKCKVKKEAPFVF 177 G + K+ +K YLV ++K I + + + G + + K + K A + Sbjct: 129 DGFITEKLTHPKYKIQKIYLVVLNKTIHYQDLDKIRQGKIYLNEGRVKIDFLHKYAKNIV 188 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELI 230 +I L G NR IRR+ + Y+V KLER + + +G W L+ E+ Sbjct: 189 KIGLHIGWNRVIRRIFKKLTYQVIKLERIHFGGFTNKNLKIGSWCFLSKQEVD 241 >UniRef50_B8DUD9 Pseudouridine synthase n=8 Tax=Bifidobacterium RepID=B8DUD9_BIFA0 Length = 257 Score = 242 bits (619), Expect = 9e-63, Method: Composition-based stats. Identities = 76/243 (31%), Positives = 126/243 (51%), Gaps = 11/243 (4%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEPR 62 +RL K ++++G SRR+ + I G V ++G+ T +G +V P V+V+G I R Sbjct: 17 DGIRLQKLLAQAGFGSRRKCEEMITDGRVEVDGELVTELGTRVDPKRQQVRVDGSRI--R 74 Query: 63 EAEDLVLIALNKPVGIVSTTEDG-ERDNIVDFV-NHSKRVFPIGRLDKDSQGLIFLTNHG 120 + +ALNKP ++ST +D R + D V + +R+F +GRLD DS+GLI +TN G Sbjct: 75 LNPRHITLALNKPRKVLSTMDDPKGRYTLRDIVGDKYERIFHMGRLDYDSEGLILMTNDG 134 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGM-SAGVPILGTVTKKCKVKKEAP----F 175 +L ++ + EK Y+ T++ ++ R + GV + K Sbjct: 135 ELSQHVMHPKYEVEKTYIATLEGHMSGTVCRRLVRTGVQLDDGWIKLDHCSIIDSNRDQT 194 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 + ++ L G NR +RR+ G+ VK+L RT+I + L I G +R L+ DE+ L K Sbjct: 195 IVKVVLHSGRNRIVRRIFGAIGFPVKRLVRTQIGPIKLGDIKSGSYRVLSQDEVRALSKE 254 Query: 236 IEN 238 + Sbjct: 255 VGL 257 >UniRef50_Q6SI36 Pseudouridine synthase n=1 Tax=uncultured marine bacterium 105 RepID=Q6SI36_9BACT Length = 255 Score = 242 bits (619), Expect = 9e-63, Method: Composition-based stats. Identities = 85/255 (33%), Positives = 136/255 (53%), Gaps = 14/255 (5%) Query: 2 LPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLI 59 +P VRL K ++ +GI SRR A+R IE G V +NG+ T +G + P D ++V+G+ + Sbjct: 1 MPSPKVRLQKVLASAGISSRRAAERLIEVGRVTVNGRSVTKLGAKADPDLDDIRVDGRKV 60 Query: 60 EPREAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSKR-VFPIGRLDKDSQGLIFLT 117 + + + + KP G V+T D E R I++ +++ + V+P+GRLD DS+GL+ LT Sbjct: 61 K--TGRPRIYLLVCKPRGYVTTRFDPEGRRTILNLISNVREYVYPVGRLDYDSEGLVILT 118 Query: 118 NHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKE----- 172 N G L ++ E+ Y V V ++ I + GV I G T VK Sbjct: 119 NDGTLAARLTHPRYGVERVYEVRVRGVPSQAAIDSLRHGVLINGRRTASSSVKFLRRLKA 178 Query: 173 ---APFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDEL 229 + R+ + +G NRQ+R+MCE G+ V +L RT+I + S + +G+ R LT E+ Sbjct: 179 KSSENALLRVAIREGRNRQVRKMCEAIGHPVIRLRRTQIGPLRDSSLKVGKHRLLTTSEV 238 Query: 230 IDLFKLIENSSSEVK 244 L + E S + K Sbjct: 239 AALMRASEVSHPQDK 253 >UniRef50_Q3AVD5 Pseudouridine synthase n=3 Tax=Cyanobacteria RepID=Q3AVD5_SYNS9 Length = 247 Score = 242 bits (619), Expect = 9e-63, Method: Composition-based stats. Identities = 75/246 (30%), Positives = 133/246 (54%), Gaps = 12/246 (4%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPG-DVVKVNGQLIEPREAED 66 RL K ++ +G+CSRR + +++ G V ++G+ A++GDQ P +++V+G + ++ Sbjct: 5 RLQKLMAAAGLCSRRRGEDWLQAGRVTVDGRVASLGDQADPNSQLIEVDGVPLISV--QE 62 Query: 67 LVLIALNKPVGIVSTTEDG-ERDNIVDFVNHSKR--VFPIGRLDKDSQGLIFLTNHGDLV 123 + LNKPVG++ + D R ++D + H +R + P+GRLD DS+G + LT+ G+L Sbjct: 63 PRVFLLNKPVGVICSCRDPQGRATVLDCLPHQERSGLHPVGRLDADSRGALLLTDQGELT 122 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKV----KKEAPFVFRI 179 ++ +H K Y V V + + +R G+ + G +T+ +V + A + + Sbjct: 123 LRLTHPRYNHAKTYRVLVRGIPSSQALRRWRDGLLLDGRLTRPARVHCLRSRGASSLLEV 182 Query: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENS 239 L +G NRQIRR+ E G+ V L+R I + L + G WR L E + L+ N+ Sbjct: 183 ELKEGRNRQIRRVAELLGHPVIDLQRVAIDGIRLDDLAEGCWRRLDAREWSTI--LVGNA 240 Query: 240 SSEVKP 245 + P Sbjct: 241 PRSMDP 246 >UniRef50_C0D9T3 Pseudouridine synthase n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D9T3_9CLOT Length = 300 Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats. Identities = 117/309 (37%), Positives = 166/309 (53%), Gaps = 49/309 (15%) Query: 1 MLPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIE 60 M+ + RLNK +S G+CSRREADR IE G V ++G A +G +V+ V G+++ Sbjct: 1 MMEE---RLNKLLSAMGVCSRREADRLIESGKVLVDGVPAKMGQKVRMDQTVVCRGKVVG 57 Query: 61 PR-------------------------------------EAEDLVLIALNKPVGIVSTTE 83 + VL+A+NKP G+V T Sbjct: 58 RGEAAAGAGNGKTARRVGSGRADGTAAQDARPASLPRSMKKPRPVLLAVNKPKGVVCTAS 117 Query: 84 DGER-DNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVD 142 D ++ NIVD + + RV+ +GRLDKDS+GL+ +TN GDLVNKI+R+GN HEKEY V VD Sbjct: 118 DKDKAPNIVDMIQYPVRVYYVGRLDKDSEGLVLMTNQGDLVNKIMRSGNAHEKEYQVVVD 177 Query: 143 KPITEEFIRGMSAGVPIL--GTVTKKCKVKKEAPFVFRITLVQGLNRQIRRMCEHFGYEV 200 +P+T EF+ M GV + T CKV+K F I L QGLNRQIRRMCE G V Sbjct: 178 RPVTAEFLARMEKGVRLKELDRTTLPCKVRKTGDKRFSIVLTQGLNRQIRRMCEACGCHV 237 Query: 201 KKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSSSEVKPKAKAKPKTAGIKRPV 260 + L+R R+MN+ L + GE+R + E + KL+E+S++ + A + P+ Sbjct: 238 RSLKRVRVMNICLGDLKSGEYRQVEGAEYREFMKLLEHSTNLSFRQQNA------ARGPI 291 Query: 261 VKMEKTAEK 269 +ME + Sbjct: 292 NRMENENGR 300 >UniRef50_Q49YI4 Pseudouridine synthase n=2 Tax=Staphylococcus RepID=Q49YI4_STAS1 Length = 232 Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats. Identities = 68/232 (29%), Positives = 119/232 (51%), Gaps = 9/232 (3%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQ-VKPG-DVVKVNGQLIEPREA 64 +RL+K++S G+ +R E + +++ V ++ K T + + P ++VKVN Q I+ Sbjct: 1 MRLDKFLSNMGVGTRTEVKQRLKKKQVTIDDKVETSPKKQINPELEIVKVNDQKIDFVN- 59 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSK--RVFPIGRLDKDSQGLIFLTNHGDL 122 V + LNKP +S T D + ++D + + +FP+GRLDKD++GL+ +TN G Sbjct: 60 --KVYLMLNKPKDYISATTDEQHKTVLDLIEDYRYLDLFPVGRLDKDTEGLLLITNDGQF 117 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAP-FVFRITL 181 ++++ G K Y V K IT+ I G+ + + K K+ + +T+ Sbjct: 118 NHELMSPGKHVAKTYEVISQKNITKNDINAFKVGIELNEGLAKPAKLVQGDELNKSFVTI 177 Query: 182 VQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDL 232 +G Q++RM EV L+R RI ++ L + GE+R LT + L Sbjct: 178 YEGRYHQVKRMFHAIDNEVLALKRIRIGDLQLDSTLASGEYRHLTQQDFKLL 229 >UniRef50_Q2W4E4 Pseudouridine synthase n=20 Tax=cellular organisms RepID=Q2W4E4_MAGSA Length = 247 Score = 242 bits (618), Expect = 1e-62, Method: Composition-based stats. Identities = 65/234 (27%), Positives = 115/234 (49%), Gaps = 14/234 (5%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFL-NGKRATIGDQVKPGDVVKVNGQLIEPRE 63 + +RL + I+ G S+R+ I+ G V L +G G + D ++V+G+ ++P Sbjct: 13 TDMRLIRLIANLGYGSQRDVKAMIKAGRVTLADGTVLDDGTKA-AHDDIRVDGEPLDP-- 69 Query: 64 AEDLVLIALNKPVGIVSTTEDGERDNIVDFVN-----HSKRVFPIGRLDKDSQGLIFLTN 118 +++ L+KP G +T D R + + + + V P+GRLD+DS GL+ LT+ Sbjct: 70 -PPGLVLMLHKPEGYTCSTSDPGR-IVYELLPERFMHRNPIVAPVGRLDRDSTGLLLLTD 127 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAG---VPILGTVTKKCKVKKEAPF 175 G L ++I K Y VT+ +P++ E ++G + T ++ P Sbjct: 128 DGPLAHRITSPKRHVPKTYEVTLARPLSGEEGAVFASGTLMLRSESTPLAPAELVVSGPQ 187 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDEL 229 RIT+ +G Q++RM G V++L R I + L + G+WR L+ E+ Sbjct: 188 TARITITEGRYHQVKRMFAAVGNHVERLHRAAIGGLDLGDLAEGQWRPLSPAEI 241 >UniRef50_Q1YVK2 Pseudouridine synthase n=3 Tax=Gammaproteobacteria RepID=Q1YVK2_9GAMM Length = 235 Score = 242 bits (618), Expect = 1e-62, Method: Composition-based stats. Identities = 67/233 (28%), Positives = 119/233 (51%), Gaps = 9/233 (3%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIG-DQVKPGDVVKVNGQLIEPREAE 65 +RL+KYIS + SR E RYI+ G+V ++ ++A G +V + + + G I E Sbjct: 2 LRLDKYISNATDLSRVEVKRYIKYGDVTIDDEKAINGAQKVSGDETICIEGSAISFAEN- 60 Query: 66 DLVLIALNKPVGIVSTTEDGERDNIVDFV--NHSKRVFPIGRLDKDSQGLIFLTNHGDLV 123 LNKP G+VS T+D +D + + S + GRLD D+ GL+ +T+ G Sbjct: 61 --RYFMLNKPAGVVSATKDSNNSTALDLIFEHRSDELQIAGRLDIDTTGLLLITDDGQWN 118 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGT--VTKKCKVKKEAPFVFRITL 181 +++ +D +K Y VT+ PIT ++ ++ GV + G +++ +++ Sbjct: 119 HRLTSPRSDCQKIYRVTLGIPITPDYAEKLANGVWLKGEKHPCLPATMEQIDDETVLLSI 178 Query: 182 VQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSG-IPLGEWRDLTDDELIDLF 233 +G Q++RM G V+ L RT++ + L + G++R LTD E+ + Sbjct: 179 AEGKYHQVKRMFAALGNHVEALHRTQVGGIILDESLEPGDYRALTDAEVASIM 231 >UniRef50_A9ITY6 Pseudouridine synthase n=6 Tax=Betaproteobacteria RepID=A9ITY6_BORPD Length = 588 Score = 241 bits (617), Expect = 1e-62, Method: Composition-based stats. Identities = 76/296 (25%), Positives = 138/296 (46%), Gaps = 12/296 (4%) Query: 4 DSSV-RLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLI-EP 61 D+++ +L+K ++++GI SRRE + I G V +NG+ A IG +V P D V+VNG+ + P Sbjct: 119 DAAMPKLHKVLADAGIGSRREMEELITAGRVSVNGEPAHIGQRVAPSDQVRVNGKPVARP 178 Query: 62 REAEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHSK--RVFPIGRLDKDSQGLIFLTN 118 + +I +KP G + + +D R ++ + + + +GRLD +++GL+ T Sbjct: 179 NTKKPPRVILYHKPAGEIVSHDDPGGRASVFARLPKLRTGKWLSVGRLDLNTEGLLIFTT 238 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKK----EAP 174 GD+ N+I+ E+EY V V + + + + G+ + + + Sbjct: 239 SGDMANRIMHPRYGTEREYAVRVLGEMDDATRKSLVEGIELEDGQAAFGALDYLGGDGSN 298 Query: 175 FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDLF 233 +R+TL +G NR++RRM E G V +L RTR ++ L + G W +L + L Sbjct: 299 RWYRVTLQEGRNREVRRMFESVGVTVSRLIRTRFGDLVLPRTLRRGRWEELDSSLVTAL- 357 Query: 234 KLIENSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKG 289 +++ A + + R NG R G+ + G Sbjct: 358 -MVQLGLLRDDDDADGGRNARQPRSHDSALPPGFGTMDRNGMNGARIGRRGKLQGG 412 >UniRef50_A6GNL7 Pseudouridine synthase n=2 Tax=Betaproteobacteria RepID=A6GNL7_9BURK Length = 458 Score = 241 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 66/272 (24%), Positives = 133/272 (48%), Gaps = 9/272 (3%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPR 62 P+ + +L+K +++SG+ SRRE + I G V +N + A +G +V P D V+VNG+LI+ + Sbjct: 65 PELAPKLHKVLADSGMGSRREMEELIVAGRVSVNAEPAHLGQRVLPTDQVRVNGKLIQRK 124 Query: 63 EA-EDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNH--SKRVFPIGRLDKDSQGLIFLTN 118 + ++ +KP G + + +D R + + + + +GRLD +++GL+ T+ Sbjct: 125 NKSKPPRVLIYHKPAGEIVSMDDPQGRTTVFQKLPKISNGKWIAVGRLDFNTEGLLLFTS 184 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK----KEAP 174 G+L N+++ + ++EY V + ++EE + + G+ + K V + A Sbjct: 185 SGELANRLMHPRYEVQREYAVRILGELSEEQRQQLLTGIQLEDGPAKFLYVDAAGGEGAN 244 Query: 175 FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDLF 233 +++ L +G NR++RRM E V +L RTR ++ + + G ++ E + Sbjct: 245 RWYKVGLKEGRNREVRRMFEACNLTVSRLIRTRFGDIMMPSTLKRGRHMEMEALEAMSYM 304 Query: 234 KLIENSSSEVKPKAKAKPKTAGIKRPVVKMEK 265 + + E + + I K Sbjct: 305 QSLGLKVDESAQEGAIRRDKKNIGSKNNKRRN 336 >UniRef50_C7H4Z6 Pseudouridine synthase n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H4Z6_9FIRM Length = 235 Score = 241 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 80/234 (34%), Positives = 126/234 (53%), Gaps = 11/234 (4%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIG-DQVKPGDVVKVNGQLIEPREAE 65 +RL+KY++E+ C+R EA + +G V +NG G Q++ GD V V+G + R+ Sbjct: 1 MRLDKYLAETAQCTRSEAKTLLNRGRVTVNGAVCKKGDTQLREGDSVAVDGAPLAYRQ-- 58 Query: 66 DLVLIALNKPVGIVSTTEDGERDNIVDFVNH---SKRVFPIGRLDKDSQGLIFLTNHGDL 122 V + LNKP G+VS + D +VD + + +FP+GRLDK S G + LT+ G Sbjct: 59 -FVYLMLNKPEGVVSASTDKRDTTVVDLIGDAYPRRELFPVGRLDKTSTGFVLLTDDGGF 117 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI-LGTVTKKCKVKKEAPF--VFRI 179 ++IL K Y V +D P+TEE RG + GV + GT +V+ P ++ Sbjct: 118 AHEILAPKRHVSKTYTVVIDTPLTEEMRRGFAEGVTLADGTALSPAEVEALTPDGLTVKV 177 Query: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSG-IPLGEWRDLTDDELIDL 232 L QG+ QI+RM +G V L R I ++L + G+WR+L+ +E+ + Sbjct: 178 RLRQGVYHQIKRMFGVYGAGVNALHRDAIGGLALDPALAPGQWRELSAEEVTAI 231 >UniRef50_B6IXC3 Pseudouridine synthase n=2 Tax=Alphaproteobacteria RepID=B6IXC3_RHOCS Length = 551 Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats. Identities = 82/293 (27%), Positives = 128/293 (43%), Gaps = 12/293 (4%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEPRE 63 R++K +S +G+CSRR+A+R+I +G V +NG+ T V+PGD + V+GQ + E Sbjct: 29 GGERISKRLSRAGLCSRRDAERWIAEGRVSVNGRVLDTPAVTVRPGDRIVVDGQPVP--E 86 Query: 64 AEDLVLIALNKPVGIVSTTEDG-ERDNIVD-FVNHSKRVFPIGRLDKDSQGLIFLTNHGD 121 E + +KP G+V+T D R + D RV +GRLD S+GL+ LTN G Sbjct: 87 PEPTRVWRYHKPDGLVTTARDEKGRPTVFDNLPPELPRVVSVGRLDLTSEGLLLLTNDGA 146 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKV----KKEAPFVF 177 L + + Y V V E I ++ G+ I G + A Sbjct: 147 LARHLELPVTGWLRRYRVRVHGAPDEAQIAKLAQGIIIEGIEYGPIETVVDRSVGANTWL 206 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIE 237 ++L +G NR++RR+ EH G V +L R L + G+ ++ L + Sbjct: 207 TVSLREGRNREVRRVMEHLGLPVSRLIRVAYGPFQLGKLEPGQVEEVPR---RVLRDQLP 263 Query: 238 NSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKGR 290 + A AG R A + P S K +P R+ G+ Sbjct: 264 GFFAAEDAAAADGRPAAGPVRMRYDRLPRAARDAAPPSATKGGRAPAREAGGQ 316 >UniRef50_Q688C2 Pseudouridine synthase n=1 Tax=Mycoplasma mobile RepID=Q688C2_MYCMO Length = 235 Score = 241 bits (615), Expect = 2e-62, Method: Composition-based stats. Identities = 80/237 (33%), Positives = 131/237 (55%), Gaps = 5/237 (2%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREA 64 +R+ K IS++GI SRR A+ I + V +NG A IGD+ DV+ V+ ++I Sbjct: 2 EKIRIQKLISQAGISSRRAAEDLILKKRVKINGVIAKIGDKASLEDVILVDEKVIS---K 58 Query: 65 EDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHSK-RVFPIGRLDKDSQGLIFLTNHGDL 122 E+ V LNKP +V+T +D R I DF++ K ++FP+GRLD D+ G+I LTN G+ Sbjct: 59 EEKVYYLLNKPKNVVTTLKDNFNRSIITDFIDEKKYKIFPVGRLDYDTTGIIILTNDGET 118 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLV 182 NK+L + + Y V +DK ++ E I+ +++ L + +V K + + ++I L Sbjct: 119 ANKLLHPKYEIPRIYEVIIDKELSLEEIKYLNSQEVFLNSKKSFQEVSKISNYKYKIKLH 178 Query: 183 QGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENS 239 QG I+++ E G +VK L RT +L + +G +R L E+ L ++N Sbjct: 179 QGSYHHIKKLFEIVGKKVKDLNRTEYAFFNLENLSIGNYRKLNKHEIDRLLNFVKNK 235 >UniRef50_Q4A5Z2 Pseudouridine synthase n=2 Tax=Mycoplasma synoviae 53 RepID=Q4A5Z2_MYCS5 Length = 234 Score = 241 bits (615), Expect = 3e-62, Method: Composition-based stats. Identities = 68/235 (28%), Positives = 117/235 (49%), Gaps = 8/235 (3%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPG-DVVKVNGQLIEPREA 64 +R+ K+I++S + +R E + I +G V +N + P D + + G L+E R Sbjct: 2 KIRIEKFIADSTLYTRNEIKKLISKGLVKVNDLIIKKSQSIDPKLDKIYLEGILLEAR-- 59 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSK----RVFPIGRLDKDSQGLIFLTNHG 120 E+ I +NKP G + D + + + + + F IGRLD D++GL+ +TN G Sbjct: 60 EEFSYIMMNKPAGYICANFDWNKQVVFELLLDLEMNLKDFFTIGRLDIDTEGLLIITNDG 119 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRIT 180 L + +L K Y V +DKP+ + + + I KK + + + IT Sbjct: 120 KLSHNLLSPKKHIPKTYYVELDKPLEKNIKELLEKELLIDEIKYKKSILNNISNNKWEIT 179 Query: 181 LVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDLFK 234 + +G QI+ + HFGY+V L+R ++ N+SL + GE++ LT +EL L Sbjct: 180 IFEGKFHQIKIIFAHFGYKVTYLKRIKMNNLSLDENLKPGEYKFLTKEELDLLKN 234 >UniRef50_Q2NSN0 Pseudouridine synthase n=7 Tax=Gammaproteobacteria RepID=Q2NSN0_SODGM Length = 235 Score = 241 bits (615), Expect = 3e-62, Method: Composition-based stats. Identities = 67/229 (29%), Positives = 116/229 (50%), Gaps = 8/229 (3%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIG-DQVKPGDVVKVNGQLIEPREAE 65 +RL+K++S+ SR R + V ++G+ G Q++P V+ +G L+ Sbjct: 1 MRLDKFLSQQLGVSRALVARELRAKRVTVDGEIIKQGAFQLRPEHQVRFDGNLLHQILTA 60 Query: 66 DLVLIALNKPVGIVSTTEDGERDNIVDFVNHS--KRVFPIGRLDKDSQGLIFLTNHGDLV 123 LNKP G V +T+D + I+ F++ ++ GRLD D+ GL+ LT+ G Sbjct: 61 --RYFMLNKPQGYVCSTDDPDHPTILYFIDEPVPDKLHAAGRLDIDTTGLVLLTDDGQWS 118 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGT--VTKKCKVKKEAPFVFRITL 181 ++ + EK+YLVT+++P+ E +AG+ + G T+ ++ +P R+T+ Sbjct: 119 YRLTSPRHHCEKDYLVTLEQPLAAEITAQFAAGILLRGEKLPTRPARLATLSPLKVRLTI 178 Query: 182 VQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSG-IPLGEWRDLTDDEL 229 +G Q++RM G V L R RI + L + GE+R LT E+ Sbjct: 179 SEGRYHQVKRMFAAVGNRVVALHRERIGAIVLDAHLQPGEYRALTAGEV 227 >UniRef50_A7HJ83 RNA-binding S4 domain protein n=3 Tax=Thermotogaceae RepID=A7HJ83_FERNB Length = 245 Score = 241 bits (615), Expect = 3e-62, Method: Composition-based stats. Identities = 74/235 (31%), Positives = 135/235 (57%), Gaps = 10/235 (4%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEP 61 S+RL+K++S + I +R E + I++G V +N + VK D+++++G IEP Sbjct: 11 EIKSIRLDKFLSNAHIGTRNEVKKIIKEGRVSVNFEIIRNPDFHVKLDDIIELDGNRIEP 70 Query: 62 REAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSK--RVFPIGRLDKDSQGLIFLTNH 119 + V I +KP G VSTT D E ++++ ++H + GRLDKD +GL+ LTN Sbjct: 71 HKN---VYIIFHKPSGFVSTTSDRE-PSVLNLIDHPYLNELHIAGRLDKDVEGLLILTND 126 Query: 120 GDLVNKILRAGNDHEKEYLVTVDK--PITEEFIRGMSAGVPIL-GTVTKKCKVKKEAPFV 176 G+ + ++ EKEY + + +T+ ++ +S G+ + GT T K++K + + Sbjct: 127 GEFTHNLISPKKHIEKEYWIYTKENVEVTQNMVKMVSEGIELEKGTKTLPGKIRKVSEKI 186 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELID 231 +T+V+G Q+++MC G E +K+ R RI N++L G+ G+W++L+ +E+ Sbjct: 187 ISLTIVEGKYHQVKKMCISLGIEWEKIVRVRIGNLTLEGLEKGKWKELSKEEISK 241 >UniRef50_C6VP86 Pseudouridine synthase n=4 Tax=Lactobacillaceae RepID=C6VP86_LACPJ Length = 246 Score = 241 bits (615), Expect = 3e-62, Method: Composition-based stats. Identities = 67/240 (27%), Positives = 118/240 (49%), Gaps = 16/240 (6%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIG-DQVKPG-DVVKVNGQLIEPREA 64 +R++K++ I +R + R I+ G++ NG+ G Q+ PG D V ++ + ++ Sbjct: 1 MRVDKFLHAMRIGTRTQVRRLIKDGHITANGEPVISGKQQINPGSDTVFLDDVQVRYQQY 60 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFV---NHSKRVFPIGRLDKDSQGLIFLTNHGD 121 +NKPVG+++ T D ++D + +FP+GRLDKD++G++ +TN G Sbjct: 61 ---FYYVMNKPVGVITATTDSAAKTVMDLFNTTDFRDDLFPVGRLDKDTEGILVITNDGA 117 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI-LGTVTKKCKV------KKEAP 174 L + +L + K Y V IT + + G+ + GT + + + E Sbjct: 118 LSHDLLSPNHHVTKVYEAEVTGEITAAQLANFNDGITLKDGTELQPAQAEIVQFHEIENF 177 Query: 175 FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDLF 233 RI + +G Q++RM G V L R + +++L G+ G +R LTDDEL L Sbjct: 178 TTIRIMIHEGKYHQVKRMVGTLGERVVGLRRIKFGSLTLPVGLLAGNYRALTDDELTALK 237 >UniRef50_B0RHF4 Pseudouridine synthase n=3 Tax=Actinobacteria (class) RepID=B0RHF4_CLAMS Length = 291 Score = 240 bits (614), Expect = 4e-62, Method: Composition-based stats. Identities = 77/254 (30%), Positives = 126/254 (49%), Gaps = 10/254 (3%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIE 60 P + VRL K ++ +G+ SRR + I G V +NG+ T G ++ P D V V+ Q ++ Sbjct: 21 PVAGVRLQKVMAAAGVASRRVCEDMIAAGRVTVNGETVTEPGRRIDPDVDEVAVDDQAVQ 80 Query: 61 PREAEDLVLIALNKPVGIVSTTED--GERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTN 118 ++ + LNKPVGI S+ D G D +R+F +GRLD ++ GL+ LTN Sbjct: 81 LDTSK--RYLMLNKPVGIYSSLRDERGRPDLREFTEEFEERLFNVGRLDAETSGLLILTN 138 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKK----EAP 174 GDL + + K Y+ V +T + I+ ++ GV + + + + Sbjct: 139 DGDLAHVLAHPSFGVLKTYIAKVTGRVTPQTIQRLTQGVDLEDGPIQADRARILSGGGDQ 198 Query: 175 FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFK 234 + ITL G NR +RRM + G+ V++L R + + L + +G RDLT DEL L Sbjct: 199 TLVEITLHSGRNRIVRRMLDEVGHPVEELVRRQFGPLHLGSLGVGRVRDLTSDELGQLLT 258 Query: 235 LIENSSSEVKPKAK 248 + + ++ P Sbjct: 259 ISREARAQAGPANP 272 >UniRef50_A6DMJ6 Pseudouridine synthase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DMJ6_9BACT Length = 239 Score = 240 bits (613), Expect = 4e-62, Method: Composition-based stats. Identities = 72/235 (30%), Positives = 117/235 (49%), Gaps = 11/235 (4%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIG--DQVKPGDVVKVNGQLIEP 61 + +RL+K I++ +R EA R ++ G V +N +G DVV +G+++E Sbjct: 5 KAKIRLDKMIAKCTDLTRSEATRALKNGFVKVNDIPQKVGKSTIDLANDVVTFDGEVLEY 64 Query: 62 REAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHS---KRVFPIGRLDKDSQGLIFLTN 118 RE + LNKP G V +D ++D + + + F GRLD D+ GL+ LT+ Sbjct: 65 RE---TIYFMLNKPKGYVCAAKDERLKTVLDLLPPALASREPFSCGRLDIDTTGLVILTD 121 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILG--TVTKKCKVKKEAPFV 176 G + I EK YLV +++E +R + GV + G +T K++K Sbjct: 122 DGTWAHGITSPKRKCEKSYLVGSVSELSDEDMRNLEQGVYLDGDDKITAPAKIEKIDEKT 181 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDELI 230 +R+ + +G Q++RM E VK L R +I +SL + G WRDLT +E+ Sbjct: 182 YRLKITEGRYHQVKRMFEAVDNMVKSLHREQIGGLSLDDDLDEGNWRDLTAEEVK 236 >UniRef50_Q15Q67 Pseudouridine synthase n=2 Tax=Bacteria RepID=Q15Q67_PSEA6 Length = 241 Score = 240 bits (613), Expect = 4e-62, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 118/227 (51%), Gaps = 12/227 (5%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREAED 66 RL++ +S G CSR+EA ++ V + G+ A +V P V+V+G+ ++ A D Sbjct: 15 RLDQLLSNLGYCSRKEARYLLKGKRVTVKGEFAKSPALKVDP-ATVRVDGEALD---APD 70 Query: 67 LVLIALNKPVGIVSTTEDGERDNIVDFVN-----HSKRVFPIGRLDKDSQGLIFLTNHGD 121 +L+ LNKP+G V + ++ E I D + + ++ +GRLDKD+ GLI +T+ Sbjct: 71 GILVMLNKPLGYVCSHDNNEGMRIYDLLPERWEFRNPKIVSVGRLDKDTSGLILVTDDTK 130 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGT--VTKKCKVKKEAPFVFRI 179 LV+++ + +K Y V+VD P+ + I + GV + K++ + V + Sbjct: 131 LVHQLTSPKHHVDKVYQVSVDCPLQSDIIDSFAKGVVLGEGAEQCLPAKIEIVSENVANV 190 Query: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTD 226 TL +G Q+RRM GY V+ L R++ L + GEW+ + Sbjct: 191 TLNEGKYHQVRRMFAACGYHVEALHRSQFGQYRLQDLAQGEWQTVAP 237 >UniRef50_C7PP04 Pseudouridine synthase n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PP04_CHIPD Length = 516 Score = 240 bits (613), Expect = 5e-62, Method: Composition-based stats. Identities = 83/240 (34%), Positives = 135/240 (56%), Gaps = 11/240 (4%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPRE 63 + LNKYI+ SG+CSRR+A ++++G V +NG+ T +V D V +N + I ++ Sbjct: 278 GEMPLNKYIAHSGLCSRRKAVDFVKEGKVTVNGELITEPAFKVTAKDEVAINNRKINIQK 337 Query: 64 AEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHS----KRVFPIGRLDKDSQGLIFLTN 118 LV I LNKP G ++TT+D E R +++ + + +RV+P+GRLD+++ GL+ LTN Sbjct: 338 N--LVYILLNKPKGYITTTDDPEGRKTVMELIQDATTEEQRVYPVGRLDRNTSGLLLLTN 395 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKC---KVKKEAPF 175 G+L K+ ++ +K Y V ++KP+T+ + GV + V V+ Sbjct: 396 DGELAQKLAHPKHNIKKIYHVGLNKPLTKAHFENILQGVTLEDGVANVDALGYVEAGDKT 455 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 I + G NR +RR+ EH YEV+KL+R ++ I G+WR LT+ E+I L Sbjct: 456 QVGIEIHSGKNRIVRRIFEHLEYEVEKLDRVTYAGLTKKNINRGKWRFLTEKEIILLKHF 515 >UniRef50_B9ZS86 Pseudouridine synthase n=2 Tax=Chromatiales RepID=B9ZS86_9GAMM Length = 318 Score = 240 bits (613), Expect = 5e-62, Method: Composition-based stats. Identities = 79/279 (28%), Positives = 133/279 (47%), Gaps = 9/279 (3%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAE 65 S R+ K ++ G+ SRRE + +IE+G V +N + A +GDQV P DV++V G++I E Sbjct: 2 SERVQKVLAARGLGSRREIEGWIERGEVKVNQRTAKLGDQVGPNDVIRVRGRVIHMAEHA 61 Query: 66 DLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSK--RVFPIGRLDKDSQGLIFLTNHGDL 122 + +KPVG + + D E R + + K R +GRLD ++ GL+ T G+L Sbjct: 62 -HRWLVYHKPVGEICSRSDPEGRKPVFASLPRLKGQRWVAVGRLDLNTSGLLLFTTDGEL 120 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKK----EAPFVFR 178 N+++ + E+EY V V + ++ R + GV + + +++ A F Sbjct: 121 ANRLMHPSHSLEREYAVRVLGEVPDDTRRMLLEGVELEDGPARFDVLEERGGDGANHWFH 180 Query: 179 ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDLFKLIE 237 + + +G NR +RR+ + G V +L R R V L G+ G RDL E+ L++ +E Sbjct: 181 VVVSEGRNRLVRRLWDAVGVTVSRLIRVRYGPVVLGRGLKTGASRDLEVREVEALYEAVE 240 Query: 238 NSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASN 276 E + + RP + R A Sbjct: 241 LPVPESIRERGRRRGPGRNTRPARGKRGKSGGRVREADR 279 >UniRef50_D2B9T7 Pseudouridine synthase n=18 Tax=Actinobacteria (class) RepID=D2B9T7_STRRD Length = 621 Score = 240 bits (612), Expect = 5e-62, Method: Composition-based stats. Identities = 74/242 (30%), Positives = 122/242 (50%), Gaps = 10/242 (4%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATI-GDQVKP-GDVVKVNGQLIEPR 62 VRL K ++++G+ SRR + I G V ++G+ G +V P V+ V+G+ + Sbjct: 382 DGVRLQKVLAQAGVASRRACEDMIGDGRVTVDGQVVRRFGARVDPAKQVIHVDGKRLPTM 441 Query: 63 EAEDLVLIALNKPVGIVSTTEDG-ERDNIVDFV-NHSKRVFPIGRLDKDSQGLIFLTNHG 120 DLV +A+NKP+G+VST D R ++ DFV + ++R+F +GRLD +++GLI LTN G Sbjct: 442 --PDLVYLAINKPIGVVSTMSDPDGRPSLADFVADRTERLFHVGRLDTETEGLILLTNDG 499 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPF----V 176 +L N++ +K+Y V I + R + G+ + + K + Sbjct: 500 ELANRLTHPSYGVQKKYWAKVPGRIERDLGRRLKKGIELEDGIAKADSFTLVQEHGQQAL 559 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLI 236 + L +G +RRM E G+ V L R V L + G R LT E+ +L+ + Sbjct: 560 VEVVLHEGRKHIVRRMLEEVGHPVIDLARIEFGPVKLGRLKPGTVRALTVKEVGELYAAV 619 Query: 237 EN 238 Sbjct: 620 GL 621 >UniRef50_Q2SRP5 Ribosomal large subunit pseudouridine synthase B n=3 Tax=Mollicutes RepID=Q2SRP5_MYCCT Length = 252 Score = 240 bits (612), Expect = 5e-62, Method: Composition-based stats. Identities = 62/249 (24%), Positives = 114/249 (45%), Gaps = 10/249 (4%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEPREAE 65 RL K IS G CSRR A++ I + V +N + +G ++ P + ++ +L+ Sbjct: 4 ERLQKVISSRGYCSRRTAEKLILENRVKVNNQIINKLGVKIDPKAEIIIDNKLVTSDSNN 63 Query: 66 DLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTNHGDLV 123 KP +++T D + R + D+ + RV+P+GRLD D GL+ +TN G+L Sbjct: 64 QKYYYLFYKPRLVLTTMYDPKKRKTVADYFKDLNHRVYPVGRLDYDVSGLLIMTNDGELS 123 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKE-------APFV 176 N I+ + K Y + ++ + + GV I K K + Sbjct: 124 NFIMHPKYEFLKTYQGLCQGQVNKQQVNQLIKGVYIDNNYLTKAYSSKLIKYDKLKNVSI 183 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLI 236 +T+ +G +++M E ++ KL+RTRI + + + G++R+L E+ L+ + Sbjct: 184 VELTINEGKKHHVKKMFESIQAQLLKLKRTRIEFLEIDNLKPGQYRELKVHEIKKLYGIY 243 Query: 237 ENSSSEVKP 245 + K Sbjct: 244 HSLKQNNKK 252 >UniRef50_UPI0001BC54DC ribosomal large subunit pseudouridine synthase B n=3 Tax=Fusobacterium RepID=UPI0001BC54DC Length = 239 Score = 240 bits (612), Expect = 6e-62, Method: Composition-based stats. Identities = 84/239 (35%), Positives = 134/239 (56%), Gaps = 6/239 (2%) Query: 2 LPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEP 61 + ++ +R+NK+++ G+ SRR+ D +IE+G + +NG AT G +V D + VNG+ Sbjct: 1 MEENKIRINKFLASKGLASRRQVDLWIEEGRISVNGSLATSGQKVSEEDDIVVNGKS-IS 59 Query: 62 REAEDLVLIALNKPVGIVST-TEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHG 120 ++ + V L K ++S +D R +VD V R+FP+GRLD + GLI LTN G Sbjct: 60 QKKQKKVYYLLYKEEEVLSAVKDDRGRRTVVDCVLSPYRIFPVGRLDYRTSGLILLTNDG 119 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKK----EAPFV 176 DL N+++ + K Y V +T+E ++ + GV + T + K + Sbjct: 120 DLFNRMMHPRAEIFKSYEVLAKGHLTKEQLKTLEEGVELEEGKTLAALIAKVKYEKGNTF 179 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 F I++ +G NRQIRRM E G V +L RT+I +SL G+ LGE+R L + E+ L+ L Sbjct: 180 FEISIREGKNRQIRRMVEAVGSRVYRLRRTKIGKLSLDGLSLGEYRALEEKEIEYLYSL 238 >UniRef50_Q1Q1Q0 Pseudouridine synthase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1Q0_9BACT Length = 260 Score = 240 bits (612), Expect = 6e-62, Method: Composition-based stats. Identities = 82/260 (31%), Positives = 134/260 (51%), Gaps = 11/260 (4%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEPREA 64 RL K ++ +GI SRRE + I G V ++G+R T +G V G V+ +G I P Sbjct: 3 ERLQKVLASAGIGSRRECENVILAGRVTVDGERVTALGATVDAGKSVIYCDGMPIRP--- 59 Query: 65 EDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTNHGDL 122 E + LNKP + T D R +D + + +R++ IGRLDK S+GLI +TN G+L Sbjct: 60 EAKIYYLLNKPKDCLCTNYDELNRLRAIDIIKNVKQRLYTIGRLDKQSEGLIIITNDGEL 119 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKE----APFVFR 178 NK+ + K Y + +D ++ E I + +GV + T+ ++KK F Sbjct: 120 SNKLSHPKYEVNKTYFIEIDGYLSNETITALQSGVWLAFGKTQPVRIKKMHRSFKKSRFE 179 Query: 179 ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIEN 238 + L +G NR+IRRM G++V+ L R +I ++ + +G++R LT+ E+ L+ + E Sbjct: 180 MILCEGKNREIRRMLADHGHKVRTLRRIKIGSLCDPDLKVGKYRKLTEQEIKSLYSMTEK 239 Query: 239 SSSEVKPKAKAKPKTAGIKR 258 E K + K+ Sbjct: 240 KPIEKKSGKQRYDTVTASKK 259 >UniRef50_B4RA72 Pseudouridine synthase n=4 Tax=Caulobacteraceae RepID=B4RA72_PHEZH Length = 521 Score = 240 bits (612), Expect = 6e-62, Method: Composition-based stats. Identities = 72/297 (24%), Positives = 135/297 (45%), Gaps = 19/297 (6%) Query: 2 LPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIE 60 R+ K ++ SG+ SRR+ +R I +G V +NG+ T +V+PGD++ V+G ++ Sbjct: 146 TELGGERIAKLLARSGVGSRRDVERLIAEGRVAINGQVLTTPAVKVEPGDILTVDGAVVG 205 Query: 61 PREAEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTN 118 E E + + +KPVG+V+T +D R + + + R+ +GRLD +S+GL+ LTN Sbjct: 206 --EPEPVRVFRYHKPVGLVTTHKDPQGRPTVFEALPEGLPRLISVGRLDLNSEGLLLLTN 263 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK-------- 170 G L + + Y IT+E + + G+ + G + + Sbjct: 264 DGGLARALELPATGVVRRYRARAHGRITQERLDTLKDGITVEGVRYGAIEARLDKAKEGH 323 Query: 171 KEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELI 230 + A +TL +G NR++RR+ E G +V +L R +L + +GE ++ + Sbjct: 324 QGANLWLTVTLQEGKNREVRRVLEALGLKVNRLIRLSYGPFALGTLDVGEIEEVGPRVIR 383 Query: 231 DLFKLIENSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKK 287 + + + P+ K + P K + + + R +P +K Sbjct: 384 EQLE------GHIPPENMPKGDRPQYRSPARKSRRAQAESRQAELVPPRPEAPAKKA 434 >UniRef50_B6W7S5 Pseudouridine synthase n=2 Tax=Anaerococcus RepID=B6W7S5_9FIRM Length = 231 Score = 240 bits (612), Expect = 7e-62, Method: Composition-based stats. Identities = 83/234 (35%), Positives = 132/234 (56%), Gaps = 8/234 (3%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREAE 65 +R+NKYI+++G+ SRR+++ YI++G VF+NGK+ + QVK D VKV G+L+E +E Sbjct: 1 MRINKYIAKAGLASRRKSEEYIKKGLVFVNGKKLDDLSYQVKENDQVKVMGKLLEIKE-- 58 Query: 66 DLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVN 124 LNKP+G +S+ D + ++ V R F GRLDKDS GL+ +TN G + N Sbjct: 59 -KFYYKLNKPIGFISSNYDPHNKKDLNSLVKIDHRFFCAGRLDKDSHGLMLITNDGKITN 117 Query: 125 KILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPIL-GTVTKKCKVKKEAPF--VFRITL 181 K++ EK Y+V VDK + ++ G+ + T K+ ++ + + Sbjct: 118 KLIHPSKKIEKTYIVKVDKLLNKDDEALFRKGIKLSVNEKTSDAKINLIDENSKIYEVII 177 Query: 182 VQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 QG NRQ+RRM +FG +V L+R +I + L + G+++ L EL L L Sbjct: 178 HQGFNRQVRRMFLYFGSKVIDLKRIKIGQIELGKLEDGKYKKLNKKELEYLESL 231 >UniRef50_A3UFV9 Pseudouridine synthase n=1 Tax=Oceanicaulis alexandrii HTCC2633 RepID=A3UFV9_9RHOB Length = 354 Score = 240 bits (612), Expect = 7e-62, Method: Composition-based stats. Identities = 77/289 (26%), Positives = 132/289 (45%), Gaps = 19/289 (6%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEP 61 + R+ K ++ +GI SRREA+R IE+G V +NG+ T +V GD V+V+G+ I Sbjct: 13 EEGGERIAKVLAHAGIASRREAERLIEKGRVSVNGEILRTPAFKVMAGDDVRVDGESIGQ 72 Query: 62 REAEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVN-HSKRVFPIGRLDKDSQGLIFLTNH 119 R + +KPVG+++T D RD + + RV +GRLD +S+GL+ LTN Sbjct: 73 R--PPTRVWRYHKPVGLLTTHSDPQGRDTVFQTLPQDMGRVISVGRLDLNSEGLLLLTND 130 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKV----KKEAPF 175 G+L + + Y V +++ + + G + G V +V + A Sbjct: 131 GELARVLELPSTGWTRRYRVRAYGNASDKALAELENGTVVDGVVYGPVEVTVDRRTGANV 190 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 + + +G NR++R++ + G V +L R L + G ++++ +L L Sbjct: 191 WLTVGIKEGKNREVRKVLQSVGLTVNRLMRVAYGPFQLGSLKRG---EISESKLSVLRDQ 247 Query: 236 IENSSS------EVKPKAKAKPKT-AGIKRPVVKMEKTAEKGGRPASNG 277 + +KP AKP T G + K + +K G G Sbjct: 248 LGKLYPLDTDGLPLKPGETAKPDTRTGTAKAKPKANRPHQKSGGKPRAG 296 >UniRef50_A6LUE3 Pseudouridine synthase n=3 Tax=Clostridium RepID=A6LUE3_CLOB8 Length = 281 Score = 238 bits (609), Expect = 1e-61, Method: Composition-based stats. Identities = 103/280 (36%), Positives = 146/280 (52%), Gaps = 55/280 (19%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAED 66 +R+NK S GICSR+E +R IE+ + +NG+ G V D + +G+ I E Sbjct: 1 MRINKLFSNYGICSRKETNRLIEEKRIIINGRYCVEGQWVNDSDEIIFDGKPISTVE--- 57 Query: 67 LVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNKI 126 V I LNKPVGI T E+ DNI+ ++ + +FP+GRLDKDSQGLI +TN G++ N+I Sbjct: 58 KVYIVLNKPVGITCTAENKVSDNIISYMKYPHYIFPVGRLDKDSQGLILMTNDGEVANRI 117 Query: 127 LRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILG------------------------- 161 L + N HEKEYLV V+K +EF++ MS GV I G Sbjct: 118 LESDNMHEKEYLVQVNKNFDDEFLKRMSNGVEITGNKSSGVRRISDKLGLYKKIEDKEIL 177 Query: 162 ---------------------------TVTKKCKVKKEAPFVFRITLVQGLNRQIRRMCE 194 T+ C+V++ F+I L QG+N+QIR+M Sbjct: 178 LGEEDPGDSSIVQLKELKNIEREQNKFVKTRPCQVERVDDNTFKIILTQGMNKQIRKMSG 237 Query: 195 HFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFK 234 GY+V KLER RIMN+ L+ + G+WR L ++E+ L Sbjct: 238 ALGYKVIKLERIRIMNIKLNDLETGKWRYLEENEMKSLKN 277 >UniRef50_C0BLA3 Pseudouridine synthase n=1 Tax=Flavobacteria bacterium MS024-3C RepID=C0BLA3_9BACT Length = 334 Score = 238 bits (609), Expect = 1e-61, Method: Composition-based stats. Identities = 77/238 (32%), Positives = 127/238 (53%), Gaps = 10/238 (4%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGK-RATIGDQVKPGDVVKVNGQLIEP 61 D+S+RLN+YIS SG+CSRREAD +I G++ +NGK +G +V DVV +G ++ P Sbjct: 97 DDNSIRLNRYISNSGVCSRREADIFIAAGSIKVNGKAVVEMGYKVALSDVVSFDGVVLNP 156 Query: 62 REAEDLVLIALNKPVGIVSTTED-GERDNIVDFVNH--SKRVFPIGRLDKDSQGLIFLTN 118 E I LNKP S+ D + + + V + ++ P+GRLDK + GL+ TN Sbjct: 157 ---EKRAYILLNKPKDFDSSATDASQPKSALGLVANATKSKIKPVGRLDKSASGLLLFTN 213 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTK---KCKVKKEAPF 175 G+L K+ + N K Y T+ K + + + + G+ + + ++ Sbjct: 214 DGELQTKLTKPKNGFRKIYHATLSKSLKADDLEKVRKGIVLEDGPVRVHEISNIEGSPAT 273 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF 233 I ++ N I+R+ +H GYE+ KL+R ++ +P G+WR LT+ E+I+L Sbjct: 274 EVGIEILSAKNNIIKRLFDHLGYELIKLDRVVYAGLTKKDLPRGQWRTLTEQEIINLK 331 >UniRef50_A6DF49 Pseudouridine synthase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DF49_9BACT Length = 236 Score = 238 bits (609), Expect = 1e-61, Method: Composition-based stats. Identities = 74/237 (31%), Positives = 125/237 (52%), Gaps = 11/237 (4%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVK-PGDVVKVNGQLIEPREA 64 +R+ K+I+ G+CSRR+A+ + +G++ +N R T + QV D V+ + + Sbjct: 1 MRIAKFIAACGVCSRRKAEELVNEGHITINNHRVTELSTQVDVDNDEVRYRRKPLVL--- 57 Query: 65 EDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLV 123 E + LNKPVG V T +D +D + R++ +GRLDK S+GLI LTN GDL Sbjct: 58 EKKLYYLLNKPVGYVCTNDDPFAEKKAIDLLPDKGRLYTVGRLDKPSEGLIVLTNDGDLA 117 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGM-SAGVPILGTVTKKCKVKKE----APFVFR 178 + + EK+Y VTV ++++ + + G+ G + + + ++ Sbjct: 118 KIMTHPSFELEKKYRVTVKGRVSQKKLDYLVRDGLTFEGVNYRVLDARIKKQVPGGYMIN 177 Query: 179 ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 TL +G NR+IR++C+ +VK+L R I ++L +P G WR +T E+ L L Sbjct: 178 FTLNEGKNREIRKICQSLDLQVKRLRRYEIAGIALGKLPPGAWRPMTQSEVRFLKSL 234 >UniRef50_B0SBU8 Pseudouridine synthase n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SBU8_LEPBA Length = 243 Score = 238 bits (609), Expect = 1e-61, Method: Composition-based stats. Identities = 68/242 (28%), Positives = 117/242 (48%), Gaps = 12/242 (4%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPRE 63 + RL+K + G +R + + I QGNV +NG G ++ D+V + + +E Sbjct: 2 AKERLDKVLGNYGFGTRSDVKKEIYQGNVKVNGLVVKDPGYKITLTDIVVYYDETLNRKE 61 Query: 64 AEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKR---VFPIGRLDKDSQGLIFLTNHG 120 +NK ++ TED ++D+++ R +FPIGRLDK+++GL+ T G Sbjct: 62 ---FYYFMMNKAPDCITATEDPREKTVMDYLSERHRNMNLFPIGRLDKETEGLLLFTTDG 118 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGT-VTKKCKVKKEAPF---V 176 L + + EKEY + P+T I +G+ + T ++ P + Sbjct: 119 TLAHYYTSPKHFVEKEYYAEISAPVTAFDISQFESGITLDDGYKTLPARLAIPDPSNPHI 178 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDLFKL 235 + L +G RQIRRM + G EV+ L+R ++ N+ L + +G +R+LT+ E L Sbjct: 179 ATVWLREGKYRQIRRMFQSLGKEVQYLKRVKMGNLELDRDLEVGSYRELTEAEEKILKTK 238 Query: 236 IE 237 I Sbjct: 239 IP 240 >UniRef50_A0LG30 Pseudouridine synthase n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LG30_SYNFM Length = 250 Score = 238 bits (609), Expect = 2e-61, Method: Composition-based stats. Identities = 81/247 (32%), Positives = 119/247 (48%), Gaps = 10/247 (4%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPG-DVVKVNGQLIEPR 62 + VRL K ++++GI SRR A+ I QG V +NG T +G +V P D + V+ + Sbjct: 2 TKVRLQKVLAQAGIASRRGAEEVIRQGRVVVNGIVVTELGVKVDPHADRITVD--RVTIA 59 Query: 63 EAEDLVLIALNKPVGIVSTTEDG-ERDNIVDFVNHS-KRVFPIGRLDKDSQGLIFLTNHG 120 E V + L KP V+T D R + DFV + R+FP+GRLD D++GL+ LTN G Sbjct: 60 MVESRVYLLLFKPRCCVTTARDPQGRKTVFDFVPDAGARLFPVGRLDFDAEGLLLLTNDG 119 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA----PFV 176 L N++ K Y V T + + GV + +T +V Sbjct: 120 LLANRLQHPRYGVTKTYEVAAMGHPTPAALDRLRTGVMLEEGMTAPAEVTVIGSSPRSTR 179 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLI 236 RI L QG NRQI+RM E G+ V ++R + L + G R L E+ L+KL+ Sbjct: 180 LRIVLHQGWNRQIKRMGEAVGHPVLSIKRVAFGPLKLGSLKPGGSRHLKSGEVELLYKLV 239 Query: 237 ENSSSEV 243 + Sbjct: 240 HLDKEQR 246 >UniRef50_O32068 Uncharacterized RNA pseudouridine synthase ytzG n=68 Tax=Bacteria RepID=YTZG_BACSU Length = 239 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 74/227 (32%), Positives = 118/227 (51%), Gaps = 14/227 (6%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATI-GDQVKPG-DVVKVNGQLIEPREA 64 +RL+K ++ SG SR+E ++ G V ++GK A + V P V V G+ ++ RE Sbjct: 1 MRLDKLLANSGYGSRKEVKAVVKAGAVMIDGKPAKDVKEHVDPDTQEVTVYGEPVDYRE- 59 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSK---RVFPIGRLDKDSQGLIFLTNHGD 121 + + +NKP G++S TED + +VD + + FP GRLDKD++G + LTN G Sbjct: 60 --FIYLMMNKPQGVLSATEDSRQQTVVDLLTPEEMRFEPFPAGRLDKDTEGFLLLTNDGQ 117 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGT-VTKKCKVKKE----APFV 176 L +++L K Y V + I+ E I + GV I G TK K + + V Sbjct: 118 LAHRLLSPKKHVPKTYEVHLKSQISREDISDLETGVYIEGGYKTKPAKAEIKTNDSGNTV 177 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSG-IPLGEWR 222 +T+ +G Q+++M + G EV L+R + VSL + GE+R Sbjct: 178 IYLTITEGKYHQVKQMAKAVGNEVVYLKRLSMGRVSLDPALAPGEYR 224 >UniRef50_Q9I5J6 Ribosomal small subunit pseudouridine synthase A n=25 Tax=Gammaproteobacteria RepID=RSUA_PSEAE Length = 230 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 64/229 (27%), Positives = 118/229 (51%), Gaps = 8/229 (3%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQ-VKPGDVVKVNGQLIEPREAE 65 +RL+++++ SRR+A I G++ ++G+ G V+ V+++ +L++ + Sbjct: 1 MRLDRFLANLPELSRRDAQMLIAGGHLRVDGQVVRDGTHEVRVFSRVELDERLLQAGKPA 60 Query: 66 DLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKR--VFPIGRLDKDSQGLIFLTNHGDLV 123 L+KP+G VS T D + ++D R + GRLD ++ GL+ LTN G Sbjct: 61 --RYYMLHKPMGCVSATRDPQHPTVLDLFPEDLRDDLHIGGRLDYNTTGLMLLTNDGQWS 118 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGV--PILGTVTKKCKVKKEAPFVFRITL 181 ++ G+ +K Y V + PI + ++ +AG+ VT +++ P R+TL Sbjct: 119 RRLTLPGSRRDKVYYVETEAPIDQRYVDAFAAGLHFRFEDLVTLPAQLEPIGPRCARLTL 178 Query: 182 VQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSG-IPLGEWRDLTDDEL 229 +G Q++RM HF +V +L R R+ ++ L +P G WR L +E+ Sbjct: 179 HEGRYHQVKRMFGHFDNKVLRLHRERMGDICLDPQLPPGAWRPLNAEEI 227 >UniRef50_Q5F8V3 Pseudouridine synthase n=21 Tax=Proteobacteria RepID=Q5F8V3_NEIG1 Length = 350 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 76/255 (29%), Positives = 128/255 (50%), Gaps = 10/255 (3%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREA 64 RL K ++ SG+ SRRE + +I G V +NGK A +GD+V P D V V G +I+ + A Sbjct: 96 EPERLQKVLAASGVGSRREMEEWINNGWVTVNGKTAQLGDKVTPDDHVTVKGSIIKLKWA 155 Query: 65 ED-LVLIALNKPVGIVSTTEDG-ERDNIVDFVNHS--KRVFPIGRLDKDSQGLIFLTNHG 120 + +I K G + + +D R +I D + + R IGRLD ++ GL+ LT G Sbjct: 156 DRLPRIILYYKQEGEIVSRDDPQGRVSIFDRLPQAASSRWVAIGRLDINTSGLLILTTSG 215 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGM-SAGVPILGTVTKKCKV----KKEAPF 175 +LV + + E+EY V V +T E +R + GV + + K ++ + A Sbjct: 216 ELVQRFAHPSFEVEREYAVRVLGGLTTEQMRSLTEEGVMLEDGLAKVERIYEQGGEGANK 275 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSG-IPLGEWRDLTDDELIDLFK 234 + I + +G NR++RR+ E G V +L R + L + G++ +L E+ ++ K Sbjct: 276 WYNIVIKEGRNREVRRIFESQGLTVSRLVRVAFGPIGLPNRLKRGQFYELNPAEVANILK 335 Query: 235 LIENSSSEVKPKAKA 249 + + + KA Sbjct: 336 WADMLLPGERRRKKA 350 >UniRef50_C6HYA4 Pseudouridine synthase n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HYA4_9BACT Length = 638 Score = 238 bits (607), Expect = 2e-61, Method: Composition-based stats. Identities = 86/296 (29%), Positives = 146/296 (49%), Gaps = 12/296 (4%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKP-GDVVKVNGQLIEP 61 D +RL+K ++ G+ SRR++++ I G+V ++G+ T G +V P V+ V+G+ + P Sbjct: 23 DGRLRLHKILAHRGVASRRKSEQLIAAGSVTVDGEVVTEPGTRVDPKHQVILVDGRPL-P 81 Query: 62 REAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHG 120 RE E L KP G+VST D E R + D+ + IGRLD ++G + LTN+G Sbjct: 82 REPETF-LFLFYKPKGVVSTLFDPEGRPTLRDYFPGIDPLLHIGRLDFQTEGALLLTNNG 140 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAG-VPILGTVTKKCKV----KKEAPF 175 DL +IL + + YLV + ++ + M+ G + + G ++ + Sbjct: 141 DLSQRILHPRFEIPRTYLVKIQGGMSPAHLERMARGEIRLDGRPVVPLELVPERQTSTNA 200 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFK- 234 +RITL +G NR++RR+ E Y V KL RT ++L+G+ GE+R +T E L Sbjct: 201 WYRITLTEGRNREVRRLFETLNYFVLKLVRTAFGPLTLAGLEPGEYRTVTPHETELLLAG 260 Query: 235 -LIENSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKG 289 ++ + + + G R + EK G+ + +R T +G Sbjct: 261 TRPQSLPKNLDSRFSRRDDDGGAPRSEGRRSGREEKVGQGSREPRRTTGKSAAPRG 316 >UniRef50_Q0F269 Pseudouridine synthase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F269_9PROT Length = 289 Score = 237 bits (606), Expect = 3e-61, Method: Composition-based stats. Identities = 79/251 (31%), Positives = 125/251 (49%), Gaps = 11/251 (4%) Query: 3 PDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEP 61 P + R+N+Y++ G+CSRREADR+I+ G V +NG+ G VK GD V V+ +L+EP Sbjct: 39 PGNPERINRYLAHCGLCSRREADRWIQAGRVSINGQLIEAPGVIVKSGDTVMVDDKLVEP 98 Query: 62 REAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHG 120 + + I NKP G + + D + R I DF++ + V IGRLD D++GL+ LT+ G Sbjct: 99 Q--QGHTYILYNKPKGQLCSRLDKKKRPLIYDFIDVAPNVQSIGRLDMDTEGLLMLTDDG 156 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSA-GVPILGTVTKKC-----KVKKEAP 174 L + +EY V + E + + G+ I T + Sbjct: 157 ALTRALTHPAAKVPREYRARVAGIVELETLAKLRRGGMDIGRGDTSDAWEVTVDSESAGH 216 Query: 175 FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDLF 233 I +++G R++RR E G+ V++L RTR + L +P G WR L E+ L Sbjct: 217 TWLNIIILRGRWREVRRTLEECGHPVRRLMRTRFGPIKLDEDMPKGTWRALNRGEIRKLR 276 Query: 234 KLIENSSSEVK 244 + N ++ Sbjct: 277 DRVINPDAKTD 287 >UniRef50_UPI0001BC42E2 ribosomal small subunit pseudouridine synthase A n=3 Tax=Fusobacterium RepID=UPI0001BC42E2 Length = 235 Score = 237 bits (605), Expect = 4e-61, Method: Composition-based stats. Identities = 60/230 (26%), Positives = 115/230 (50%), Gaps = 8/230 (3%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQ--VKPGDVVKVNGQLIEPREA 64 +R++K++ E G+ SR+E ++ + +NG T + + D V + + Sbjct: 1 MRIDKFLVECGVGSRKEVKELLKSRKIRVNGLFITSPKENIEEEKDEVYYGEKKLS---Y 57 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNH---SKRVFPIGRLDKDSQGLIFLTNHGD 121 ++ L+K G V+ ED ++D + K + P+GRLDKD++GL+ TN G Sbjct: 58 QEFRYYILHKKAGYVTALEDSREATVMDLLPEWVIKKDLAPVGRLDKDTEGLLLFTNDGK 117 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITL 181 L +++L + +K Y +++ ITEE + + GV I T K +K +T+ Sbjct: 118 LNHRLLSPKSHVDKTYHASLECDITEEALEKLREGVMIGEYKTLPAKAEKLEDRKIALTI 177 Query: 182 VQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELID 231 +G Q+++M E G +V L+R + L + LGE ++++ +++I Sbjct: 178 REGKFHQVKKMLEAVGNKVIYLKRISFGKLVLGDLELGEVKEVSLEDIIS 227 >UniRef50_D1B9Q8 Pseudouridine synthase n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B9Q8_THEAS Length = 234 Score = 237 bits (605), Expect = 4e-61, Method: Composition-based stats. Identities = 78/227 (34%), Positives = 121/227 (53%), Gaps = 7/227 (3%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREAE 65 +RLN+Y++ G+ SRR+ + I G V LNG + +G +V+ GD V+V+G + P Sbjct: 1 MRLNQYLARCGLGSRRKVEALIVTGRVKLNGLVVSDLGCRVEEGDHVEVDGCSVHPL--- 57 Query: 66 DLVLIALNKPVGIVSTTEDGERDNIVDFVN---HSKRVFPIGRLDKDSQGLIFLTNHGDL 122 D + I +NKP G+V ED ++D + + R FP+GRLDK+SQGL+ LTN GD Sbjct: 58 DKIYIVMNKPRGVVCAVEDRRYRTVLDLLPPQIRALRPFPVGRLDKESQGLLILTNDGDF 117 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLV 182 + IL K Y VTVD+ + E + + GV G + + V P R+ + Sbjct: 118 CDAILHPRRGIIKTYEVTVDRDVPSESLDRLKGGVWSDGEILEPLMVSLMGPRTVRVDIQ 177 Query: 183 QGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDEL 229 +G R++RRM G++V L R RI + L + G + D++ Sbjct: 178 EGKKREVRRMMAALGFKVLSLLRRRIGKMELRRLRAGGICLFSVDDI 224 >UniRef50_C7NBL1 Pseudouridine synthase n=3 Tax=Leptotrichia RepID=C7NBL1_LEPBD Length = 252 Score = 237 bits (605), Expect = 4e-61, Method: Composition-based stats. Identities = 75/255 (29%), Positives = 125/255 (49%), Gaps = 30/255 (11%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIG-DQVKPG-DVVKVNGQLIEPREA 64 +RL+K+++ SGI +R+E ++ V +N G V D+VK ++I Sbjct: 1 MRLDKFLANSGIGTRKEVKEILKNKKVSVNNVFVKDGKIHVDEEKDIVKYENKIIN---Y 57 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKR---VFPIGRLDKDSQGLIFLTNHGD 121 + V I +NKP G++S TED ++D +N R +FP+GRLD D++GLI LTN G Sbjct: 58 KPFVYIMMNKPAGVISATEDSHHKTVIDLLNDEYRTYDIFPVGRLDIDTEGLILLTNDGI 117 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI-LGTVTKKCKVKKEAPF----- 175 L + +L +K+Y V + K ++E+ I+ + G+ + +TK KV+ Sbjct: 118 LSHNLLSPKKHVDKKYYVKITKSLSEDDIKTLENGIKLEENFITKNAKVEIICNNSEKES 177 Query: 176 ---------------VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIM-NVSLSGIPLG 219 IT+ +G Q++RM + G EV L+R ++ + + LG Sbjct: 178 EDFDFGENENNKNENSVYITISEGKFHQVKRMFKAVGNEVLYLKRVKMGNLLLDENLELG 237 Query: 220 EWRDLTDDELIDLFK 234 +R+LT EL L Sbjct: 238 GYRELTQKELNGLRN 252 >UniRef50_A5CX60 Pseudouridine synthase n=1 Tax=Candidatus Vesicomyosocius okutanii HA RepID=A5CX60_VESOH Length = 241 Score = 237 bits (605), Expect = 4e-61, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 128/238 (53%), Gaps = 8/238 (3%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREA--E 65 RL K I+ +G SRR +R IEQG + +N K A IGD+ + +VK++G+ I + Sbjct: 4 RLQKLIANAGYGSRRWVERLIEQGRIEVNNKIAIIGDKTEITSLVKIDGRKINLSRYVEQ 63 Query: 66 DLVLIALNKPVGIVST-TEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVN 124 + +I LNK G++ + +D R ++ + R +GRLD ++ GL+ +TN+GDL N Sbjct: 64 ETKVIILNKQAGVICSNRDDKGRKSVYSLLPKESRWIMVGRLDLNTSGLLLVTNNGDLAN 123 Query: 125 KILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK----KEAPFVFRIT 180 K++ ++ ++EY V V + + ++ ++ GV +K ++ K A +++ Sbjct: 124 KLMHPSSEIDREYAVRVLGQVKNKDLKKLTQGVVFDDGFSKFNQITFSGGKGANRWYKVV 183 Query: 181 LVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDELIDLFKLIE 237 L +G R++RR+ E G++V +L R R + L + ++ L ++ LF +E Sbjct: 184 LREGKKREVRRLWEVLGFKVSRLIRIRFGEIRLPDNLKANQYDYLKTVQIKLLFNAVE 241 >UniRef50_B3PMD0 Pseudouridine synthase n=2 Tax=Mycoplasma RepID=B3PMD0_MYCA5 Length = 251 Score = 236 bits (604), Expect = 4e-61, Method: Composition-based stats. Identities = 62/234 (26%), Positives = 123/234 (52%), Gaps = 3/234 (1%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPRE 63 + ++++ K IS+ G CSRR+A+ I+Q + +N + AT+G +V D + ++G+ + + Sbjct: 9 EKTIKIQKAISQVGYCSRRQAEELIKQKRIKINHQVATLGQRVLADDQIFIDGKKLNIK- 67 Query: 64 AEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDL 122 + NKP + T +D E R I +++ + + +GRLD +S G+I +TN GD Sbjct: 68 -PPKFYLVFNKPKNTICTLKDPEKRKTIYEYMGLKEYAYSVGRLDFNSTGIILVTNDGDF 126 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFVFRITLV 182 N I + ++ Y V ++K ++E +++ IL + K APF + ++L Sbjct: 127 ANLIAHPSANIKRVYEVVLEKELSEGDFNYLNSNKVILNGKKSSQSLSKLAPFKYSVSLY 186 Query: 183 QGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLI 236 +G N ++ + VK+L R ++ + + +G+ R L++ E+ +L L Sbjct: 187 EGRNHHVKNLFLLVNNYVKELHRVSYGPITDANLKIGKTRHLSESEVQNLKTLA 240 >UniRef50_Q21JF0 Pseudouridine synthase n=2 Tax=Gammaproteobacteria RepID=Q21JF0_SACD2 Length = 242 Score = 236 bits (603), Expect = 6e-61, Method: Composition-based stats. Identities = 68/244 (27%), Positives = 117/244 (47%), Gaps = 21/244 (8%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREAE 65 +RL+K+I+ + SR E R I+ V ++ K T V + V+++G++I EA Sbjct: 1 MRLDKFIANNSSYSRTEVKRLIKNKTVCVDKKITTDPSFTVTNLNTVRIDGEII---EAI 57 Query: 66 DLVLIALNKPVGIVSTTEDGERDNIVDFV-----------NHSKR---VFPIGRLDKDSQ 111 + I LNKP G V +D +VD + R + GRLD D+ Sbjct: 58 KPLYIMLNKPTGYVCANKDNIHSPVVDLITEQHARQSDQTPPKYRAQSLQIAGRLDVDTT 117 Query: 112 GLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTV--TKKCKV 169 GL+ LT++G+ +++ K Y V ++KP+ + I+ +S GV + G T V Sbjct: 118 GLVLLTDNGEWNHRVTSPNKACFKRYRVKLEKPLDDAAIKLLSEGVMLHGEKAATLPATV 177 Query: 170 KKEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDE 228 + + +++ +G Q++RM G V KL R I + L + G+WR LT++E Sbjct: 178 ELISNTEVLLSIQEGRFHQVKRMFVKVGTCVVKLHREAIGAIELDTNLKPGQWRHLTNEE 237 Query: 229 LIDL 232 + + Sbjct: 238 IEAI 241 >UniRef50_A1UU09 Pseudouridine synthase n=4 Tax=Bartonella RepID=A1UU09_BARBK Length = 499 Score = 236 bits (603), Expect = 7e-61, Method: Composition-based stats. Identities = 66/236 (27%), Positives = 103/236 (43%), Gaps = 9/236 (3%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGD-QVKPGDVVKVNGQLIEPRE 63 S R+ K ++ +GI SRR+A+ I G + +NG T V P D + V+ I P Sbjct: 43 DSERIAKRLARAGIASRRDAEMMIIAGRIAVNGTVVTTPVLNVIPSDHITVDEIPIPPI- 101 Query: 64 AEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVN-HSKRVFPIGRLDKDSQGLIFLTNHGD 121 E L +KP G+V+T D E R + D + RV +GRLD +++GL+ LTN G Sbjct: 102 -ERTRLWLYHKPSGLVTTNRDPEGRPTVFDNLPKEMPRVVSVGRLDINTEGLLLLTNDGG 160 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKV----KKEAPFVF 177 L + ++Y V I + + + G+ I G ++ + Sbjct: 161 LARVLELPLTGWVRKYRVRAHGKIKQSELDKLKNGIAIDGIFYGSIDASIDREQGSNVWL 220 Query: 178 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF 233 + L +G NR+I+ G V +L R LS + G R+L L D Sbjct: 221 SVALREGKNREIKNFLGALGLSVNRLIRVSYGPFQLSDLEEGAVRELKGRTLRDQL 276 >UniRef50_A8U4V7 Pseudouridine synthase n=10 Tax=Lactobacillales RepID=A8U4V7_9LACT Length = 239 Score = 236 bits (603), Expect = 7e-61, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 119/238 (50%), Gaps = 14/238 (5%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPG-DVVKVNGQLIEPREA 64 +RL+K + E+G SRR R ++ V +NG+ V P V V G I+ Sbjct: 1 MRLDKLLFETGFGSRRTVKRLLKSKQVQVNGQTIMVDSLNVDPQLQEVTVAGVPID---Y 57 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKR---VFPIGRLDKDSQGLIFLTNHGD 121 + V L+KP G+VS D ++D + S+R +FP+GRLDKD++GL+ LTN+G Sbjct: 58 QPHVYYMLHKPAGVVSAVSDAVNQTVIDLIEPSQRVPGLFPVGRLDKDTEGLLLLTNNGQ 117 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGT-VTKKCKVKKEA----PFV 176 L ++L + K Y V V++ +T++ +AG+ G + K ++ + Sbjct: 118 LGYQLLIPKKEVTKCYEVVVNERVTDDDQLAFTAGIVFDGGVICKPAQLTILSQSDTESR 177 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSG-IPLGEWRDLTDDELIDLF 233 + + +G Q+++M G +V L+R + + L + LG +R L +EL+ L Sbjct: 178 VLLEISEGKFHQVKKMFLSVGKKVIYLKRLSMGPLQLDKTLSLGSYRPLHAEELVALK 235 >UniRef50_Q5SLZ5 Pseudouridine synthase n=4 Tax=Bacteria RepID=Q5SLZ5_THET8 Length = 243 Score = 236 bits (602), Expect = 9e-61, Method: Composition-based stats. Identities = 65/243 (26%), Positives = 120/243 (49%), Gaps = 9/243 (3%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREA 64 RL+K ++ G+ SR+E R + QG V + G+ G +V G ++V G+ +E R Sbjct: 3 GERLDKVLARLGLGSRKEVARLVRQGKVRVLGQVVKDPGFRVPEGAALEVEGRPLEVR-- 60 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSK--RVFPIGRLDKDSQGLIFLTNHGDL 122 + + L+KP G V++ +G ++ + + P+GRLDKD++GL+ T G L Sbjct: 61 -RHLHVLLHKPPGFVTSRTEG--PSVYALLQGFPTRDLSPVGRLDKDAEGLLLFTTDGLL 117 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK-KEAPFVFRITL 181 ++++ + K YLV +++P+ + G+ + G T ++ E P + L Sbjct: 118 LHRLTHPRHKVAKRYLVHLERPVGPKDQEAFREGILLDGKKTLPAELTPLEDPTWAEVVL 177 Query: 182 VQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSSS 241 +G QI+RM G V +L+R + + L +P G+ R LT+ E L+ + Sbjct: 178 KEGRFHQIKRMFRARGNRVLRLKRLALGPLELGDLPPGKARPLTEAEEKALYAAVGLGGE 237 Query: 242 EVK 244 + + Sbjct: 238 DPE 240 >UniRef50_A3JEU2 Pseudouridine synthase n=2 Tax=Marinobacter RepID=A3JEU2_9ALTE Length = 250 Score = 236 bits (602), Expect = 9e-61, Method: Composition-based stats. Identities = 65/236 (27%), Positives = 110/236 (46%), Gaps = 8/236 (3%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGD-QVKPGDVVKVNGQLIEPRE 63 S+++L++ +S SR++A+ I G V++N D V V VNG+ ++ Sbjct: 14 SAMKLSRIVSNQPDISRKQANWLIATGQVYVNDLSCRTADADVDEFAAVSVNGKTLQQGH 73 Query: 64 AEDLVLIALNKPVGIVSTTEDGERDNIVDFVNH--SKRVFPIGRLDKDSQGLIFLTNHGD 121 I L+KP G +S TED ++ + S+ + GRLD+ + GL+ LTN+G Sbjct: 74 CA--HYIMLHKPAGYLSATEDDTHPTVLQLLPPGLSQCLHIAGRLDRATTGLMILTNNGT 131 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGT--VTKKCKVKKEAPFVFRI 179 ++ G K Y VT PI + + + G+ T ++ P + R+ Sbjct: 132 WSRQLTLPGMGIAKVYRVTTAYPIGPDTPQRFAEGIWFEYEQLTTAPATLELLEPTLARL 191 Query: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDELIDLFK 234 T+ +G Q++RM G V L R +I ++ L S + G +R LT E L + Sbjct: 192 TIYEGRYHQVKRMFHAVGNRVIALHREQIGHLQLNSDLAEGNFRMLTGSETEGLNR 247 >UniRef50_B6BUN1 Pseudouridine synthase n=1 Tax=beta proteobacterium KB13 RepID=B6BUN1_9PROT Length = 257 Score = 236 bits (602), Expect = 9e-61, Method: Composition-based stats. Identities = 70/246 (28%), Positives = 122/246 (49%), Gaps = 10/246 (4%) Query: 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPRE 63 + R+ K+++ G+ SRR + I+Q + +N K +G V +++ +NG+ I + Sbjct: 12 NKKERIQKFLANMGMGSRRSIEELIKQKKITVNQKPIDLGHMVYGNEIIHINGRRIYFKN 71 Query: 64 AEDL--VLIALNKPVGIVSTTEDGER-DNIVDFVNHSK--RVFPIGRLDKDSQGLIFLTN 118 AE LI +KP G + + D + + + K + IGRLD ++ GL+ +TN Sbjct: 72 AEKRESRLIIYHKPEGEIVSHSDPKHQKTVFQKLPKVKNGKWISIGRLDINTSGLLLITN 131 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK----KEAP 174 G L N ++ ++EY V + +TEE I + GV + V + + A Sbjct: 132 DGKLANHMMHPSQQIDREYSVRILGEVTEEIINNIRKGVKLDDGVAHVDTFEHTGGEGAN 191 Query: 175 FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSG-IPLGEWRDLTDDELIDLF 233 FRI L +G NR+IRR+ E +V +L RTR ++L + G++ +L L +F Sbjct: 192 QWFRIILKEGRNREIRRLVESQNLKVSRLIRTRYGPLNLPSHLKRGQFMELEKKNLEKIF 251 Query: 234 KLIENS 239 K++ S Sbjct: 252 KMLGMS 257 >UniRef50_A5KLG0 Pseudouridine synthase n=8 Tax=Bacteria RepID=A5KLG0_9FIRM Length = 261 Score = 235 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 74/262 (28%), Positives = 123/262 (46%), Gaps = 38/262 (14%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIG-DQVK-PGDVVKVNGQLIEPRE 63 +RL+KY++E G +R + + I +G+V +NG+ A +V D + G+ I Sbjct: 2 KLRLDKYLTEMGCGTRSQVKKEILKGSVSVNGEIAKKAERKVDTEKDEIIFKGEKIFYAG 61 Query: 64 AEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKR--VFPIGRLDKDSQGLIFLTNHGD 121 E LNKP G+VS TED + ++D + SKR +FP GRLDKD++GL+ +TN G Sbjct: 62 YE---YFMLNKPAGVVSATEDKKERTVIDLIKESKRKDLFPAGRLDKDTEGLLLITNDGQ 118 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI-LGTVTKKCKVKKEA------- 173 L +++L +K Y + +TEE +R GV I T ++ + Sbjct: 119 LAHRLLSPKKHVDKIYYAKIKGIVTEEDVRLFEKGVHIGDEKPTMPAALEILSVQKERRK 178 Query: 174 ----------------------PFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNV 211 +T+ +G Q++RM G EV L+R + + Sbjct: 179 EKIKEQKILPETKNETDEKEDGYSEIYLTIKEGRFHQVKRMFRAVGKEVVYLKRIQFGTL 238 Query: 212 SLS-GIPLGEWRDLTDDELIDL 232 +L + G++R LT++E+ L Sbjct: 239 TLDPSLKPGQYRKLTEEEVEQL 260 >UniRef50_B1M661 Pseudouridine synthase n=2 Tax=Alphaproteobacteria RepID=B1M661_METRJ Length = 601 Score = 235 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 72/288 (25%), Positives = 123/288 (42%), Gaps = 11/288 (3%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQ-VKPGDVVKVNGQLIEPREA 64 R+ K ++ +GI SRR+A+ I G V +NG+ T + V D + ++G+ + R Sbjct: 85 GERIAKAMARAGIASRRDAETMIVAGRVSVNGETLTSPARNVTENDRILIDGEPMPSR-- 142 Query: 65 EDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHS-KRVFPIGRLDKDSQGLIFLTNHGDL 122 E L +KP G+V+T D E R + D + RV +GRLD +++GL+ LTN G L Sbjct: 143 ERSRLWIFHKPRGVVTTARDPEGRQTVFDVLPEDLPRVVAVGRLDINTEGLLLLTNDGGL 202 Query: 123 VNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVK----KEAPFVFR 178 I + Y V + + ++ GV I G + + Sbjct: 203 AKVIAHPDTGWLRRYRVRAHGDTDQAQLDRLAKGVTIDGMEYGPVEATLDRVQGDNVWLT 262 Query: 179 ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDL--FKLI 236 + L +G NR+++R+ EH G V +L R L + +G ++ L D L Sbjct: 263 LGLREGKNREVKRILEHLGLSVNRLIRLSFGPFQLGDLEVGLVEEVRTRVLKDQLGKSLA 322 Query: 237 ENSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPG 284 E + + + G RP + K+A+ + + +P Sbjct: 323 EQAGVDFDSPVREPIAPFGGTRPADRDAKSAQPAPARRNAARPAPAPR 370 >UniRef50_B1KQS3 Pseudouridine synthase n=20 Tax=Gammaproteobacteria RepID=B1KQS3_SHEWM Length = 239 Score = 235 bits (600), Expect = 1e-60, Method: Composition-based stats. Identities = 63/239 (26%), Positives = 113/239 (47%), Gaps = 16/239 (6%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGK-RATIGDQVKPGDVVKVNGQLIEPREAE 65 +RL+K++ +S +R EA I G V +NG+ + QV + +++ G + A Sbjct: 1 MRLDKFLCKSTQLTRHEACELILAGKVLVNGESVVSPSAQVHENNHIRLEG--GQRLTAR 58 Query: 66 DLVLIALNKPVGIVSTTEDGERDNIVDFVN--HSKRVFPIGRLDKDSQGLIFLTNHGDLV 123 I L+KP +S+ DG+ ++ +F+N H+ + GRLD D+ GL+ +T+ G Sbjct: 59 ASRYIMLHKPADTLSSNVDGDHPSVFNFINLEHTSELHIAGRLDADTTGLLLITDDGRWS 118 Query: 124 NKILRAGNDHEKEYLV--------TVDKPITEEFIRGMSAGVPILGT--VTKKCKVKKEA 173 + EK Y V + I E G+ + G +T K++ + Sbjct: 119 FNVFNPKYHCEKVYRVYLRDSIEGEIAGEIDAELKARFKQGLDLQGEQALTLPAKLEFVS 178 Query: 174 PFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDL 232 P +T+ +G Q++RM G V L R ++ + L +P+G+WR LT +E+ + Sbjct: 179 PKEVLLTITEGRYHQMKRMFARVGNRVNALHREQVGKIKL-DMPVGQWRYLTREEIDSI 236 >UniRef50_B4RM91 Pseudouridine synthase n=8 Tax=Betaproteobacteria RepID=B4RM91_NEIG2 Length = 416 Score = 235 bits (600), Expect = 1e-60, Method: Composition-based stats. Identities = 76/255 (29%), Positives = 128/255 (50%), Gaps = 10/255 (3%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREA 64 RL K ++ SG+ SRRE + +I G V +NGK A +GD+V P D V V G +I+ + A Sbjct: 162 EPERLQKVLAASGVGSRREMEEWINNGWVTVNGKTAQLGDKVTPDDHVTVKGSIIKLKWA 221 Query: 65 ED-LVLIALNKPVGIVSTTEDG-ERDNIVDFVNHS--KRVFPIGRLDKDSQGLIFLTNHG 120 + +I K G + + +D R +I D + + R IGRLD ++ GL+ LT G Sbjct: 222 DRLPRIILYYKQEGEIVSRDDPQGRVSIFDRLPQAASSRWVAIGRLDINTSGLLILTTSG 281 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGM-SAGVPILGTVTKKCKV----KKEAPF 175 +LV + + E+EY V V +T E +R + GV + + K ++ + A Sbjct: 282 ELVQRFAHPSFEVEREYAVRVLGGLTTEQMRSLTEEGVMLEDGLAKVERIYEQGGEGANK 341 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSG-IPLGEWRDLTDDELIDLFK 234 + I + +G NR++RR+ E G V +L R + L + G++ +L E+ ++ K Sbjct: 342 WYNIVIKEGRNREVRRIFESQGLTVSRLVRVAFGPIGLPNRLKRGQFYELNPAEVANILK 401 Query: 235 LIENSSSEVKPKAKA 249 + + + KA Sbjct: 402 WADMLLPGERRRKKA 416 >UniRef50_B6EJI1 Pseudouridine synthase n=8 Tax=Gammaproteobacteria RepID=B6EJI1_ALISL Length = 354 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 78/302 (25%), Positives = 151/302 (50%), Gaps = 23/302 (7%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGD-VVKVNGQLIEPREA 64 S +L K ++ +G+ SRRE + I+ G V ++G++A +GD+++ D ++++G ++ +E+ Sbjct: 2 SEKLQKVLARAGLGSRRELETMIQAGRVSIDGQKAKLGDRLENVDARIRIDGHVVSVKES 61 Query: 65 EDLV--LIALNKPVGIVSTTEDGE-RDNIVDFVNHSK--RVFPIGRLDKDSQGLIFLTNH 119 D++ ++A +KP G + T D E R + D + K R +GRLD ++ GL+ T Sbjct: 62 TDVICRVLAYHKPEGELCTRHDPEGRRTVFDRLPKIKDSRWVSVGRLDANTAGLLLFTTD 121 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA----PF 175 G+L N+++ E+EY+ + I ++ ++ + GV + + V Sbjct: 122 GELANRLMHPSRKVEREYMCRIFGDINDKMVKNLVTGVKLEDGEARFEDVMYAGGEGMNH 181 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSG-IPLGEWRDLTDDELIDLFK 234 F + + +G NR++RR+ + G V +L+R R ++ L +P G W +L E+ L Sbjct: 182 TFYVVINEGRNREVRRLWDSQGVTVSRLKRVRYGDIFLEKALPRGGWMELELKEVNYLRD 241 Query: 235 LIENSSSEV-------KPKAKAKPKTAGIKRPVVKM-----EKTAEKGGRPASNGKRFTS 282 ++E + + + +AK K+ I+R V + E GGR N K+ Sbjct: 242 MVELPHEKESLLDVDKESRKRAKSKSQKIRRAVKRHDERTTEDRNTAGGRRGRNNKKPVG 301 Query: 283 PG 284 Sbjct: 302 GS 303 >UniRef50_B1ZYG8 Pseudouridine synthase n=3 Tax=Verrucomicrobia RepID=B1ZYG8_OPITP Length = 266 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 83/256 (32%), Positives = 131/256 (51%), Gaps = 12/256 (4%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPG-DVVKVNGQLIEPRE 63 +RL KY++++G+CSRR A+ I G V++NG A +G +V PG D V G+ + Sbjct: 5 EPIRLQKYLADAGVCSRRAAEALIASGEVWVNGAPAQVGQKVTPGVDRVTTGGKPVRT-T 63 Query: 64 AEDLVLIALNKPVGIVSTTEDGERD-NIVDFVNH---SKRVFPIGRLDKDSQGLIFLTNH 119 A+ V +A++KP G+V T ED I + R F GRLDKDS+GL+ LT Sbjct: 64 AQPRVTLAMHKPRGLVCTNEDPHNPETIFSVLPREFAKLRFFCAGRLDKDSEGLVILTTD 123 Query: 120 GDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFV--- 176 GDL ++++ N K Y VT++KP + + + GV G K + P V Sbjct: 124 GDLAHRLMHPSNLVVKRYHVTLEKPFPAKRLPLLVKGVIAQGERLKVERAALINPSVSHE 183 Query: 177 ---FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF 233 + + G R+IR + GY VK+L R +I L GIPL + ++ E+ LF Sbjct: 184 ATNLDVHMHHGKKREIRLLFTELGYPVKRLRRYQIGGFRLKGIPLRAMKKMSPAEIESLF 243 Query: 234 KLIENSSSEVKPKAKA 249 ++ + ++ A++ Sbjct: 244 RVPRTPHAAIEVTAES 259 >UniRef50_A8SIK9 Pseudouridine synthase n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SIK9_9FIRM Length = 235 Score = 234 bits (599), Expect = 2e-60, Method: Composition-based stats. Identities = 68/237 (28%), Positives = 120/237 (50%), Gaps = 11/237 (4%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVK-PGDVVKVNGQLIEPRE 63 +R+++++ GI SR E +Y++ V LNGK QV D + + +++ +E Sbjct: 2 KIRIDRFLCHMGIGSRSEIKKYLKTCRVKLNGKFEKNSNTQVDIEKDEILFDDEIVIYKE 61 Query: 64 AEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSK---RVFPIGRLDKDSQGLIFLTNHG 120 + LNKP +S T D + ++D + +FP+GRLD D+ G + LTN G Sbjct: 62 FT---YLMLNKPKDFISATFDTKLPTVLDLLEFPYSNMELFPVGRLDIDTTGFLILTNDG 118 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI--LGTVTKKCKVKKEAPFVFR 178 + K+Y VT+ I E I + G+ T+ KV+K + Sbjct: 119 KFSYNVTNPKKKVNKKYFVTLRDEIISEQIEKLENGIYFEKEDFTTENAKVEKISEKEIN 178 Query: 179 ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSG-IPLGEWRDLTDDELIDLFK 234 +T+ +G Q++RM E+ EV +L++ I N++L + LGE+R++T+ EL ++F+ Sbjct: 179 LTISEGKFHQVKRMLEYVENEVVELKKVCIGNLNLDDSLKLGEYREITNSELEEIFR 235 >UniRef50_C1XNC4 Pseudouridine synthase n=1 Tax=Meiothermus ruber DSM 1279 RepID=C1XNC4_MEIRU Length = 257 Score = 234 bits (597), Expect = 3e-60, Method: Composition-based stats. Identities = 64/242 (26%), Positives = 111/242 (45%), Gaps = 11/242 (4%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGD-VVKVNGQLIEPREA 64 RL+K + G+ SR+E R G + +NGK G + P ++V G+ + Sbjct: 19 ERLDKVLGHLGVGSRKEIHRLARAGLITINGKIVADAGFKFDPSQAHIEVAGEPLV---Y 75 Query: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNH---SKRVFPIGRLDKDSQGLIFLTNHGD 121 + + LNKP G +++T+D I + P+GRLDKD++GL+ LT G+ Sbjct: 76 QKFFYLLLNKPAGYITSTKDPSGTPITALLPEEFWRNDWMPVGRLDKDTEGLLLLTTDGE 135 Query: 122 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAG-VPILGTVTKKCKVKKE-APFVFRI 179 L++++ K Y V + P T E + +AG + + G + ++ P + Sbjct: 136 LLHRLTHPRWKVTKRYYVELASPATPEDVAVFAAGTLELEGEPLQPAELYLGPDPRKVEL 195 Query: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIM-NVSLSGIPLGEWRDLTDDELIDLFKLIEN 238 L +G Q++RM G +V L+R +P G R LT DE+ L++++ Sbjct: 196 VLREGRFHQVKRMFAARGNQVTYLKRLAFGPLQLPPNLPPGASRQLTPDEIKALYEVVGL 255 Query: 239 SS 240 Sbjct: 256 PG 257 >UniRef50_A9AXM1 Pseudouridine synthase n=3 Tax=Bacteria RepID=A9AXM1_HERA2 Length = 728 Score = 234 bits (597), Expect = 3e-60, Method: Composition-based stats. Identities = 83/280 (29%), Positives = 145/280 (51%), Gaps = 9/280 (3%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPG-DVVKVNGQLIEPREA 64 RL+K+++ +G+ SRR + + G V +NG+ +G Q+ P D ++V+G+ I P Sbjct: 2 ERLHKFLARAGVDSRRACEELMLAGRVSVNGRVQRELGTQIDPDKDDIRVDGEQITP--P 59 Query: 65 EDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLV 123 +L + L+KP +++T D E R + D V R+FP+GRLD DS+GL+ LT+ GDL Sbjct: 60 TELHYVLLHKPSSVMTTLHDPEGRQTVADLVKSHNRLFPVGRLDYDSEGLLLLTDDGDLT 119 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAP----FVFRI 179 ++ + EKEY +++ + E +R GV + T ++ R+ Sbjct: 120 FRLTHPSFEVEKEYQALLNQTPSVEQLREWRNGVELDDGKTAPAWIELLNETADGTWVRV 179 Query: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENS 239 + +G NRQIRR+ E G EV++L R R ++L + G+WR LT E+ L + S Sbjct: 180 VIHEGRNRQIRRVAEALGLEVRRLIRLREGPLTLGELQAGQWRALTPTEIDRLRMHGKQS 239 Query: 240 SSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKR 279 + + + + +R V +++++ + R A R Sbjct: 240 KAWTPVRPQENAEGGKPRRQVRRIDRSGQLVERRADVEPR 279 >UniRef50_Q01Z61 Pseudouridine synthase n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01Z61_SOLUE Length = 264 Score = 234 bits (597), Expect = 3e-60, Method: Composition-based stats. Identities = 77/249 (30%), Positives = 120/249 (48%), Gaps = 11/249 (4%) Query: 9 LNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKP-GDVVKVNGQLIEPREAED 66 L + S++G SR +A ++I G V +NGK V P D V + G+ ++ A Sbjct: 16 LERVFSKAGAGSRTDARKWISGGKVRVNGKVVLNPDHWVDPDHDKVTLEGKPLK---AAT 72 Query: 67 LVLIALNKPVGIVSTTEDGE-RDNIVDFVNHS-KRVFPIGRLDKDSQGLIFLTNHGDLVN 124 I L KP G ++T D E R + + K + P+GRLD D+ GL+ LTN D Sbjct: 73 KSYILLYKPKGYLTTYRDPEGRPTVYALLGDVGKWLSPVGRLDLDTSGLLVLTNDNDFAE 132 Query: 125 KILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEA----PFVFRIT 180 +I + K Y + +++E I + AGV + T+ +VK+ +T Sbjct: 133 RITNPEHKVPKTYQIKAATVLSDEQIERLRAGVELSDGPTRPAEVKRLRDGPKHTFLEMT 192 Query: 181 LVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSS 240 + +G NRQ+RRM E +V KL RT I V + +P+G+WR+LT DE+ +L + Sbjct: 193 ITEGRNRQVRRMLEAVESKVSKLVRTAIGPVRIGELPIGKWRNLTADEVHELRGQAAKKA 252 Query: 241 SEVKPKAKA 249 S Sbjct: 253 SGPARDKNR 261 >UniRef50_A1S9T3 Pseudouridine synthase n=1 Tax=Shewanella amazonensis SB2B RepID=A1S9T3_SHEAM Length = 254 Score = 234 bits (597), Expect = 4e-60, Method: Composition-based stats. Identities = 81/248 (32%), Positives = 130/248 (52%), Gaps = 12/248 (4%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAE 65 RL KY++E+G+ SRR A R IE G V ++G++A+ D+V + V V+G + P +A+ Sbjct: 9 GTRLCKYLAEAGVASRRGASRLIETGRVCIDGQQASHSDRVFDSNRVTVDGAPLCPAQAK 68 Query: 66 DLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNK 125 +KPVGI + +++ + R+FP GRLDKDS+GL+ LTN G+L + Sbjct: 69 A--YFLYHKPVGIDCRLRAEDPHSLIHCLPGDLRLFPAGRLDKDSRGLLLLTNDGELTQR 126 Query: 126 ILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKV----------KKEAPF 175 ++ H+K YL+T++K + I ++AG T+ C V + P Sbjct: 127 LMHPDFHHQKGYLITLNKAPQPDDIAAIAAGFDYGEGPTRPCVVEAAIDCGYATEDGNPR 186 Query: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 R+ L +G RQIRR+ GY V L R I +++ + GE R LT EL L + Sbjct: 187 KLRMRLTEGKKRQIRRLWRARGYRVLDLLRESIQQLNIGKLEQGEIRSLTASELRQLKRT 246 Query: 236 IENSSSEV 243 ++ + + Sbjct: 247 LDLPNEQD 254 >UniRef50_C6XB83 RNA-binding S4 domain protein n=2 Tax=Methylophilaceae RepID=C6XB83_METSD Length = 455 Score = 234 bits (597), Expect = 4e-60, Method: Composition-based stats. Identities = 86/239 (35%), Positives = 129/239 (53%), Gaps = 20/239 (8%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEPREAED 66 RL+K ++E G+CSRREAD +I G V +NG+ +G +V+P ++V+ + + + Sbjct: 217 RLSKRMAELGLCSRREADEWIVNGWVRVNGQVVDELGSRVEPDANIEVSKEA--EKHQSE 274 Query: 67 LVLIALNKPVGIVS-TTEDGERDNIVDFVNHS----------------KRVFPIGRLDKD 109 +V I L+KPVG VS EDG +V + K + P GRLD D Sbjct: 275 IVTILLHKPVGYVSGQAEDGYEPAVVLVHPDNHWAEDPVQKEFRRGFLKGLAPAGRLDID 334 Query: 110 SQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKV 169 S GL+ LT G + +++ + EKEYLV V+ +++E +R ++ G+ + G K KV Sbjct: 335 STGLLVLTQDGRVARQLIGEDSQTEKEYLVRVEGTLSDEGLRKLNHGLSLDGVQLKPAKV 394 Query: 170 KKEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDE 228 + R L +G RQIRRMCE G V L+R RI +V+L +P G+WR L E Sbjct: 395 SWQNEDQLRFVLREGRKRQIRRMCELVGLHVVGLKRVRIGSVALGKLPPGQWRYLRPGE 453 >UniRef50_B2IHU4 Pseudouridine synthase n=1 Tax=Beijerinckia indica subsp. indica ATCC 9039 RepID=B2IHU4_BEII9 Length = 528 Score = 233 bits (596), Expect = 4e-60, Method: Composition-based stats. Identities = 77/313 (24%), Positives = 127/313 (40%), Gaps = 30/313 (9%) Query: 5 SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPRE 63 R+ K ++ +G+CSRR+A+ +I +G V +NG T G V DV+ V+G+ + R Sbjct: 88 EPQRIAKVMARAGLCSRRDAEAWIAEGRVSVNGTVLTQPGVSVSDEDVILVDGEKLAARG 147 Query: 64 AEDLVLIALNKPVGIVSTTEDGE-RDNIVDFV----NHSKRVFPIGRLDKDSQGLIFLTN 118 L +KP G+V+T D E R + D++ RV IGRLD +++GL+ LTN Sbjct: 148 HT--RLFLFHKPRGLVTTNHDPEGRPTVFDYLHERHPDMPRVLSIGRLDINTEGLLLLTN 205 Query: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKV----KKEAP 174 G L + + Y V + + + G+ I G +V ++ A Sbjct: 206 DGGLSRLLELPTTGWVRRYRVRAKGTTDQAVLDQLRQGITIDGIHYAGMEVTFDREQGAN 265 Query: 175 FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFK 234 ++L +G NR+++R+ E G EV +L R L +P G+ ++ L D Sbjct: 266 SWLTLSLREGKNREVKRVLEQIGLEVNRLIRLSFGPFQLGDLPEGDVTEVRTRVLRDQLG 325 Query: 235 L---------------IENSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKR 279 + + K KT + V K A + + Sbjct: 326 PSLAAAAGVDWTRHDEDAAEPAAPERARKTPSKTRTEGKSVTKSHGAAPRPSSRTFTKDK 385 Query: 280 FTS---PGRKKKG 289 P R K Sbjct: 386 PREDEHPARTAKP 398 >UniRef50_C0EB54 Pseudouridine synthase n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EB54_9CLOT Length = 248 Score = 233 bits (596), Expect = 4e-60, Method: Composition-based stats. Identities = 67/238 (28%), Positives = 121/238 (50%), Gaps = 13/238 (5%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGD-QVKP-GDVVKVNGQLIEPRE 63 +R++K++S I +R +A + G V +NG D +V P GD ++V+G++ Sbjct: 2 KIRIDKFLSTQAIATRSQAKEMLRAGRVLVNGTPVKAADLKVDPEGDEIRVDGRV---YG 58 Query: 64 AEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKR---VFPIGRLDKDSQGLIFLTNHG 120 ++ + + LNKP G+VS T+D ++D V R +FP GRLD+D+ G + +T+ G Sbjct: 59 YQEHLYLMLNKPQGVVSATDDKVHRTVLDLVPPELRRRGLFPAGRLDRDTVGFVLITDDG 118 Query: 121 DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI-LGTVTKKCKVKKEAPF---V 176 + + IL + K Y +D PI E + ++ GV + GT + ++ + Sbjct: 119 EFAHNILSPRHHVPKTYEAGLDGPIGENELSVLAQGVVLGDGTKCRPAELTVLQSGERPL 178 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDLF 233 +I +V+G QI+RM G V L+RT+I ++L + G+ ++ L + Sbjct: 179 IQIVIVEGRYHQIKRMFAAVGRRVLTLKRTKIGGLALDPSLKEGDCIAISPSNLEKIQ 236 >UniRef50_A6LLC7 RNA-binding S4 domain protein n=1 Tax=Thermosipho melanesiensis BI429 RepID=A6LLC7_THEM4 Length = 230 Score = 233 bits (596), Expect = 5e-60, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 123/225 (54%), Gaps = 10/225 (4%) Query: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREAE 65 +RL+K++S + + SR+E R I+ G V +NG+ T + +VK D+V VN I P Sbjct: 1 MRLDKFLSNAKVGSRKEVKRLIKFGIVKINGEIITNVDFKVKENDIVTVNNTPITPYHN- 59 Query: 66 DLVLIALNKPVGIVSTTEDGERDNIVDFVNHS--KRVFPIGRLDKDSQGLIFLTNHGDLV 123 V I NKP G S+ + ER NI +F++H + + GRLDKD +GL+ +TN G Sbjct: 60 --VYIIFNKPTGYTSSKSEFER-NIFEFIDHPYVENLHIAGRLDKDVEGLLLITNDGIFT 116 Query: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPI-LGTVTKKCKVKKEAPFVFRITLV 182 +KI + EKEY+V VDK I++E I+ G+ + GT K +K+ IT+ Sbjct: 117 HKITSPKSKIEKEYIVKVDKEISDEMIQKAKDGIVLKNGTRFKPAIIKRLKDNFISITIT 176 Query: 183 QGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSG--IPLGEWRDLT 225 +G +I+ + + G KK+ER RI + L + GEW ++ Sbjct: 177 EGKYHEIKLIVKFLGLSYKKIERIRIGKLKLEDFNLKRGEWSEID 221 >UniRef50_A8G0B7 Pseudouridine synthase n=19 Tax=Shewanella RepID=A8G0B7_SHESH Length = 261 Score = 233 bits (596), Expect = 5e-60, Method: Composition-based stats. Identities = 84/238 (35%), Positives = 131/238 (55%), Gaps = 11/238 (4%) Query: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVK---------PGDVVKVNG 56 +RL KY++ +G+CSRR A RYI G + + G++A D V +++ +G Sbjct: 22 KIRLAKYLALTGLCSRRAATRYIRDGLIMIEGRQANHIDTVTLIESPDGLICKELLLFDG 81 Query: 57 QLIEPREAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFL 116 +E E + LNK VG + D+++ + S R++P+GRLDKDS+GL+ L Sbjct: 82 MAVEGIEPKQ--YRMLNKCVGTDCRLLPDDSDSLLHLLPASPRLYPVGRLDKDSRGLLLL 139 Query: 117 TNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAPFV 176 TN G+L ++ H K Y V VD+P +EF++ M+ GV T C + + + Sbjct: 140 TNDGELTQHLMHPDFGHTKTYRVRVDRPYGDEFLQKMAQGVSYRDVTTLPCTMTRLSEDQ 199 Query: 177 FRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFK 234 F I L QGLNRQIRRM + G++V L+R +I + L + GE R+LT +E+ L + Sbjct: 200 FEIVLTQGLNRQIRRMSQALGFKVIDLKRVKIQTLMLEDLNEGEMRELTVEEIDKLKQ 257 >UniRef50_A0M7H0 Ribosomal large subunit pseudouridine synthase F n=4 Tax=Flavobacteriales RepID=A0M7H0_GRAFK Length = 295 Score = 233 bits (595), Expect = 5e-60, Method: Composition-based stats. Identities = 82/239 (34%), Positives = 130/239 (54%), Gaps = 10/239 (4%) Query: 1 MLPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLI 59 + +RLNKYI+ SG+CSRR+AD YI GNV +NGK T +G +VK D V+ +G+ + Sbjct: 57 LTNSDGIRLNKYIANSGVCSRRDADMYIAAGNVTVNGKSITEMGYRVKLEDDVRFDGRRL 116 Query: 60 EPREAEDLVLIALNKPVGI-VSTTEDGERDNIVDFVNH--SKRVFPIGRLDKDSQGLIFL 116 P + E I LNKP G V+ + +++ V S +V P+G+LD ++GL+ Sbjct: 117 NPEKPE---YILLNKPAGFFVTGNPEKGGKTVMELVARTTSAKVSPVGKLDNQAKGLLLF 173 Query: 117 TNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTV---TKKCKVKKEA 173 TN G L K+ + N + Y VT++K +T+E + G+ GV I G+ T ++ + Sbjct: 174 TNDGTLAKKLAKPKNGIRQIYQVTLNKNLTKEDLEGIEKGVYIEGSKVLITSISFIEDKP 233 Query: 174 PFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDL 232 I L + R+ + GYEV+ L+R ++ +P G R+LT E+I+L Sbjct: 234 HNEVGIELYSIKEHIVTRIFKSLGYEVESLDRVVFGGLTKKDLPRGRHRNLTKQEVINL 292 >UniRef50_A6WK95 Pseudouridine synthase n=12 Tax=Gammaproteobacteria RepID=A6WK95_SHEB8 Length = 256 Score = 233 bits (595), Expect = 6e-60, Method: Composition-based stats. Identities = 65/232 (28%), Positives = 112/232 (48%), Gaps = 9/232 (3%) Query: 8 RLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREAED 66 RL++Y+ R+ + G V ++G + QV ++++ +++ A Sbjct: 28 RLDRYLCTQLHTHRKAVRELLLSGRVRVDGLIVKDMDRQVDEFSHIQLDEHILQ---ANA 84 Query: 67 LVLIALNKPVGIVSTTEDGERDNIVDFVNHSKR--VFPIGRLDKDSQGLIFLTNHGDLVN 124 V + L+KP+G+VS T+D + ++D ++ R + GRLD +S GL+ LTN + Sbjct: 85 PVYVMLHKPIGVVSATKDIQHKTVIDLLDCEARDELHIAGRLDLNSSGLLLLTNDSRWSD 144 Query: 125 KILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVP--ILGTVTKKCKVKKEAPFVFRITLV 182 ++ + +K Y VT+ PITEE+I + G+ T+ K+ A V +TL Sbjct: 145 ALMSPTHKVDKVYRVTLANPITEEYIAAFAEGMYFGFEDITTQPAKLVILADNVAEVTLH 204 Query: 183 QGLNRQIRRMCEHFGYEVKKLERTRIMNVSLS-GIPLGEWRDLTDDELIDLF 233 +G QI+RM F V L R I ++ L + GE R LT E+ + Sbjct: 205 EGKYHQIKRMFGRFRNPVVGLHRLSIGDIVLDEKLAPGESRALTAAEVASIR 256 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.311 0.170 0.494 Lambda K H 0.267 0.0519 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,018,010,677 Number of Sequences: 3077464 Number of extensions: 104527496 Number of successful extensions: 402425 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 1985 Number of HSP's successfully gapped in prelim test: 2231 Number of HSP's that attempted gapping in prelim test: 389867 Number of HSP's gapped (non-prelim): 5724 length of query: 290 length of database: 1,040,396,356 effective HSP length: 127 effective length of query: 163 effective length of database: 649,558,428 effective search space: 105878023764 effective search space used: 105878023764 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.0 bits) S2: 93 (40.1 bits)