Phyre 2 alignment of P42601 with c1r7gA_

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Job Description | P42601
Confidence | 1.66% | Date | Thu Jan 5 12:01:46 GMT 2012
Rank | 72 | Aligned Residues | 27
% Identity | 33% | Template | c1r7gA_
PDB info | PDB header:membrane protein | Chain: A: PDB Molecule:genome polyprotein; | PDBTitle: nmr structure of the membrane anchor domain (1-31) of the2 nonstructural protein 5a (ns5a) of hepatitis c virus3 (minimized average structure, sample in 100mm dpc)
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

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Query Sequence |  | G | S | W | L | I | S | Q | F | D | W | I | L | Y | I | F | G | A | F | L | L | F | T | G | V | K | M | A
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | G | S | W | L | R | D | I | W | D | W | I | C | E | V | L | S | D | F | K | T | W | L | K | A | K | L | M
Template Known Secondary structure |  | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | S |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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