Phyre 2 alignment of P42601 with c3a0bl_

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Job Description | P42601
Confidence | 6.23% | Date | Thu Jan 5 12:01:46 GMT 2012
Rank | 20 | Aligned Residues | 25
% Identity | 32% | Template | c3a0bl_
PDB info | PDB header:electron transport | Chain: L: PDB Molecule:photosystem ii reaction center protein l; | PDBTitle: crystal structure of br-substituted photosystem ii complex
Resolution | 3.70 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 105 | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | S | V | P | A | A | L | Q | R | R | V | L | V | Y | G | V | L | G | A | I | V | L | R | T | I | M
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | R | Q | P | V | E | L | N | R | T | S | L | Y | L | G | L | L | L | I | L | V | L | A | L | L | F
Template Known Secondary structure |  |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 5007 | . | . | 5010 | . | . | . | . | . | . | . | . | . | 5020 | . | . | . | . | . | . | . | . | . | 5030 | .

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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