15/01/2012 05:55:20 : INFO  : Run start: Sun Jan 15 05:55:19 GMT 2012
15/01/2012 05:55:23 : INFO  : Initialised job
15/01/2012 05:55:23 : INFO  : Renaming log file 'phyre2_20120115_055519.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/3e24117744b4e7d2/phyre_20120115_055519.log'
15/01/2012 05:55:24 : INFO  : Initialised job:
Sequence
>batch____
MTPVKVWQERVEIPTYETGPQDIHPMFLENRVYQGSSGAVYPYGVTDTLSEQKTLKSWQA
VWLENDYIKVMILPELGGRVHRAWDKVKQRDFVYHNEVIKPALVGLLGPWISGGIEFNWP
QHHRPTTFMPVDFTLEAHEDGAQTVWVGETEPMHGLQVMTGFTLRPDRAALEIASRVYNG
NATPRHFLWWANPAVKGGEGHQSVFPPDVTAVFDHGKRAVSAFPIATGTYYKVDYSAGVD
ISRYKNVPVPTSYMAEKSQYDFVGAWCHDEDGGLLHVANHHIAPGKKQWSWGHSEFGQAW
DKSLTDNNGPYIELMTGIFADNQPDFTWLDAYEEKRFEQYFLPYHSLGMVQNASRDAVIK
LQRSKRGIEWGLYAISPLNGYRLAIREIGKCNALLDDAVALMPATAIQGVLHGINPERLT
IELSDADGNIVLSYQEHQPQALPLPDVAKAPLAAQDITSTDEAWFIGQHLEQYHHASRSP
FDYYLRGVALDPLDYRCNLALAMLEYNRADFPQAVAYATQALKRAHALNKNPQCGQASLI
RASAYERQGQYQQAEEDFWRAVWSGNSKAGGYYGLARLAARNGNFDAGLDFCQQSLRACP
TNQEVLCLHNLLLVLSGRQDNARVQREKLLRDYPLNATLWWLNWFDGRSESALAQWRGLC
QGRDVNALMTAGQLINWGMPTLAAEMLNALDCQRTLPLYLQASLLPKAERGELVAKAIDV
FPQFVRFPNTLEEVAALESIEECWFARHLLACFYYNKRSYNKAIAFWQRCVEMSPEFADG
WRGLAIHAWNKQHDYELAARYLDNAYQLAPQDARLLFERDLLDKLSGATPEKRLARLENN
LEIALKRDDMTAELLNLWHLTGQADKAADILATRKFHPWEGGEGKVTSQFILNQLLRAWQ
HLDARQPQQACELLHAALHYPENLSEGRLPGQTDNDIWFWQAICANAQGDETEATRCLRL
AATGDRTINIHSYYNDQPVDYLFWQGMALRLLGEQQTAQQLFSEMKQWAQEMAKTSIEAD
FFAVSQPDLLSLYGDLQQQHKEKCLMVAMLASAGLGEVAQYESARAELTAINPAWPKAAL
FTTVMPFIFNRVH

15/01/2012 05:55:25 : INFO  : Checked sequence
15/01/2012 05:55:26 : INFO  : Finding homologues with PSI-BLAST
15/01/2012 05:55:27 : INFO  : PSI-BLAST 3 iterations
15/01/2012 05:59:48 : INFO  : PSI-BLAST 5 iterations
15/01/2012 06:11:04 : INFO  : Finished PSI-BLAST
15/01/2012 06:11:06 : INFO  : Running Buildali to generate a3m file
15/01/2012 08:21:49 : INFO  : Converting to HMM
15/01/2012 08:23:25 : INFO  : Calibrating HMM
15/01/2012 08:24:08 : INFO  : Searching HMM database
15/01/2012 08:48:03 : INFO  : Finished buildali
15/01/2012 08:48:04 : INFO  : Predicting secondary structure
15/01/2012 08:48:09 : INFO  : Predicted secondary structure (PSI-Pred)
15/01/2012 08:48:10 : INFO  : Predicting Disordered regions
15/01/2012 08:48:13 : INFO  : Predicted Disorder (Disopred)
15/01/2012 08:48:14 : INFO  : Running memsat_svm check
15/01/2012 08:53:44 : INFO  : Globular protein
15/01/2012 08:53:45 : INFO  : Predicted Transmembrane (memsat_svm) ID '3e24117744b4e7d2'
15/01/2012 08:53:45 : INFO  : Initialising fold library search
15/01/2012 08:53:47 : INFO  : Initialised search input
15/01/2012 08:53:48 : INFO  : Building Ensemble models
15/01/2012 08:53:51 : INFO  : Building hh.c2xpiA_.model.1.pdb
15/01/2012 08:54:01 : INFO  : Building hh.d1w3ba_.model.2.pdb
15/01/2012 08:54:08 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/3e24117744b4e7d2/hh.d1w3ba_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/3e24117744b4e7d2/d1w3ba_.2.pdb
15/01/2012 08:54:10 : INFO  : Building hh.d2ooea1.model.3.pdb
15/01/2012 08:54:17 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/3e24117744b4e7d2/hh.d2ooea1.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/3e24117744b4e7d2/d2ooea1.5.pdb
15/01/2012 08:54:20 : INFO  : Building hh.c3nreB_.model.4.pdb
15/01/2012 08:54:26 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/3e24117744b4e7d2/hh.c3nreB_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/3e24117744b4e7d2/c3nreB_.54.pdb
15/01/2012 08:54:29 : INFO  : Building hh.c3mwxA_.model.5.pdb
15/01/2012 08:54:36 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/3e24117744b4e7d2/hh.c3mwxA_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/3e24117744b4e7d2/c3mwxA_.70.pdb
15/01/2012 08:54:38 : INFO  : Building hh.c3os7B_.model.6.pdb
15/01/2012 08:54:45 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/3e24117744b4e7d2/hh.c3os7B_.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/3e24117744b4e7d2/c3os7B_.73.pdb
15/01/2012 08:54:47 : INFO  : Building hh.c3os7D_.model.7.pdb
15/01/2012 08:54:54 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/3e24117744b4e7d2/hh.c3os7D_.model.7.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/3e24117744b4e7d2/c3os7D_.77.pdb
15/01/2012 08:54:58 : INFO  : Building hh.c3q1nA_.model.8.pdb
15/01/2012 08:55:05 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/3e24117744b4e7d2/hh.c3q1nA_.model.8.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/3e24117744b4e7d2/c3q1nA_.81.pdb
15/01/2012 08:55:08 : INFO  : Building c2xpiA_.1.pdb
15/01/2012 08:55:16 : INFO  : Building d1w3ba_.2.pdb
15/01/2012 08:55:24 : INFO  : Building c3fp4A_.3.pdb
15/01/2012 08:55:32 : INFO  : Building c2gw1A_.4.pdb
15/01/2012 08:55:41 : INFO  : Building d2ooea1.5.pdb
15/01/2012 08:55:49 : INFO  : Building c2y4tA_.6.pdb
15/01/2012 08:55:58 : INFO  : Building c3iegB_.7.pdb
15/01/2012 08:56:05 : INFO  : Building c3hymB_.8.pdb
15/01/2012 08:56:14 : INFO  : Building d1qsaa1.9.pdb
15/01/2012 08:56:22 : INFO  : Building c1fchB_.10.pdb
15/01/2012 08:56:30 : INFO  : Building d1fcha_.11.pdb
15/01/2012 08:56:38 : INFO  : Building c2uy1A_.12.pdb
15/01/2012 08:56:46 : INFO  : Building c3pe3D_.13.pdb
15/01/2012 08:56:56 : INFO  : Building d1dcea1.14.pdb
15/01/2012 08:57:06 : INFO  : Building c1xi4D_.15.pdb
15/01/2012 08:57:18 : INFO  : Building c1tnoI_.16.pdb
15/01/2012 08:57:27 : INFO  : Building d2h6fa1.17.pdb
15/01/2012 08:57:35 : INFO  : Building d1d8da_.18.pdb
15/01/2012 08:57:43 : INFO  : Building d1hz4a_.19.pdb
15/01/2012 08:57:51 : INFO  : Building c3cvpA_.20.pdb
15/01/2012 08:59:24 : INFO  : Finished HH model building
15/01/2012 08:59:25 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
15/01/2012 09:00:19 : INFO  : html domain output complete ID '3e24117744b4e7d2'
15/01/2012 11:09:29 : INFO  : Run end  : Sun Jan 15 11:09:29 GMT 2012
