Phyre 2 Results for P0ADN2

Email | l.a.kelley@imperial.ac.uk
Description | P0ADN2
Date | Thu Jan 5 11:21:25 GMT 2012
Unique Job ID | 3d423dd00147618d

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d1b74a1 |
|  | 41.0 | 30 | Fold:ATC-like Superfamily:Aspartate/glutamate racemase Family:Aspartate/glutamate racemase
2 | c2z7bA_ |
|  | 39.1 | 15 | PDB header:lyase Chain: A: PDB Molecule:mlr6791 protein; PDBTitle: crystal structure of mesorhizobium loti 3-hydroxy-2-methylpyridine-4,2 5-dicarboxylate decarboxylase
3 | c3e0dA_ |
|  | 30.7 | 28 | PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase iii subunit alpha; PDBTitle: insights into the replisome from the crystral structure of2 the ternary complex of the eubacterial dna polymerase iii3 alpha-subunit
4 | d2efva1 |
|  | 28.8 | 22 | Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:MJ0366-like
5 | c2jfnA_ |
|  | 25.8 | 50 | PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of escherichia coli glutamate racemase2 in complex with l-glutamate and activator udp-murnac-ala
6 | c2ohoA_ |
|  | 23.4 | 30 | PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: structural basis for glutamate racemase inhibitor
7 | d1or7c_ |
|  | 23.4 | 19 | Fold:N-terminal, cytoplasmic domain of anti-sigmaE factor RseA Superfamily:N-terminal, cytoplasmic domain of anti-sigmaE factor RseA Family:N-terminal, cytoplasmic domain of anti-sigmaE factor RseA
8 | c1or7C_ |
|  | 23.4 | 19 | PDB header:transcription Chain: C: PDB Molecule:sigma-e factor negative regulatory protein; PDBTitle: crystal structure of escherichia coli sigmae with the cytoplasmic2 domain of its anti-sigma rsea
9 | c2jfoB_ |
|  | 22.7 | 30 | PDB header:isomerase Chain: B: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of enterococcus faecalis glutamate2 racemase in complex with d- and l-glutamate
10 | c3pt8B_ |
|  | 21.1 | 9 | PDB header:oxygen transport Chain: B: PDB Molecule:hemoglobin iii; PDBTitle: structure of hbii-iii-cn from lucina pectinata at ph 5.0
11 | c2qdjA_ |
|  | 20.1 | 32 | PDB header:antitumor protein Chain: A: PDB Molecule:retinoblastoma-associated protein; PDBTitle: crystal structure of the retinoblastoma protein n-domain2 provides insight into tumor suppression, ligand3 interaction and holoprotein architecture
12 | c3outC_ |
|  | 19.8 | 30 | PDB header:isomerase Chain: C: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of glutamate racemase from francisella tularensis2 subsp. tularensis schu s4 in complex with d-glutamate.
13 | c2jfzB_ |
|  | 19.7 | 40 | PDB header:isomerase Chain: B: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of helicobacter pylori glutamate racemase2 in complex with d-glutamate and an inhibitor
14 | c3hfrA_ |
|  | 17.4 | 30 | PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of glutamate racemase from listeria monocytogenes
15 | c2jfqA_ |
|  | 17.2 | 30 | PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of staphylococcus aureus glutamate2 racemase in complex with d-glutamate
16 | c2dwuA_ |
|  | 16.9 | 40 | PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of glutamate racemase isoform race1 from bacillus2 anthracis
17 | c2gzmB_ |
|  | 16.7 | 30 | PDB header:isomerase Chain: B: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of the glutamate racemase from bacillus2 anthracis
18 | c1b74A_ |
|  | 16.7 | 30 | PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: glutamate racemase from aquifex pyrophilus
19 | d1pl8a2 |
|  | 16.6 | 20 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Alcohol dehydrogenase-like, C-terminal domain
20 | c1zuwA_ |
|  | 15.5 | 40 | PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase 1; PDBTitle: crystal structure of b.subtilis glutamate racemase (race) with d-glu
21 | d1uwya2 |
| not modelled | 14.5 | 16 | Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Pancreatic carboxypeptidases
22 | c2qfiB_ |
| not modelled | 14.4 | 9 | PDB header:transport protein Chain: B: PDB Molecule:ferrous-iron efflux pump fief; PDBTitle: structure of the zinc transporter yiip
23 | d1skza1 |
| not modelled | 14.0 | 50 | Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Leech antihemostatic proteins Family:Huristasin-like
24 | d2qfia2 |
| not modelled | 13.7 | 9 | Fold:Cation efflux protein transmembrane domain-like Superfamily:Cation efflux protein transmembrane domain-like Family:Cation efflux protein transmembrane domain-like
25 | c3ajfA_ |
| not modelled | 11.4 | 19 | PDB header:viral protein Chain: A: PDB Molecule:non-structural protein 3; PDBTitle: structural insigths into dsrna binding and rna silencing suppression2 by ns3 protein of rice hoja blanca tenuivirus
26 | d1ckma1 |
| not modelled | 11.3 | 8 | Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:DNA ligase/mRNA capping enzyme postcatalytic domain
27 | c2kvsA_ |
| not modelled | 11.3 | 43 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein mw0776; PDBTitle: nmr solution structure of q7a1e8 protein from staphylococcus2 aureus: northeast structural genomics consortium target:3 zr215
28 | c3r6uA_ |
| not modelled | 10.9 | 7 | PDB header:transport protein Chain: A: PDB Molecule:choline-binding protein; PDBTitle: crystal structure of choline binding protein opubc from bacillus2 subtilis
29 | d2ea9a1 |
| not modelled | 9.6 | 31 | Fold:Profilin-like Superfamily:YeeU-like Family:YagB/YeeU/YfjZ-like
30 | c3d9oB_ |
| not modelled | 9.6 | 8 | PDB header:transcription Chain: B: PDB Molecule:rna-binding protein 16; PDBTitle: snapshots of the rna processing factor scaf8 bound to different2 phosphorylated forms of the carboxy-terminal domain of rna-polymerase3 ii
31 | c2bnlE_ |
| not modelled | 9.5 | 12 | PDB header:stress-response Chain: E: PDB Molecule:modulator protein rsbr; PDBTitle: the structure of the n-terminal domain of rsbr
32 | c3fp5A_ |
| not modelled | 9.4 | 9 | PDB header:lipid binding protein Chain: A: PDB Molecule:acyl-coa binding protein; PDBTitle: crystal structure of acbp from moniliophthora perniciosa
33 | c1vjqB_ |
| not modelled | 9.3 | 25 | PDB header:structural genomics, de novo protein Chain: B: PDB Molecule:designed protein; PDBTitle: designed protein based on backbone conformation of2 procarboxypeptidase-a (1aye) with sidechains chosen for maximal3 predicted stability.
34 | d2h28a1 |
| not modelled | 9.2 | 28 | Fold:Profilin-like Superfamily:YeeU-like Family:YagB/YeeU/YfjZ-like
35 | c3dofB_ |
| not modelled | 8.8 | 5 | PDB header:signaling protein/hydrolase Chain: B: PDB Molecule:adp-ribosylation factor-like protein 2-binding PDBTitle: complex of arl2 and bart, crystal form 2
36 | c2hnhA_ |
| not modelled | 8.8 | 17 | PDB header:transferase Chain: A: PDB Molecule:dna polymerase iii alpha subunit; PDBTitle: crystal structure of the catalytic alpha subunit of e. coli2 replicative dna polymerase iii
37 | c2jzfA_ |
| not modelled | 8.7 | 50 | PDB header:viral protein Chain: A: PDB Molecule:replicase polyprotein 1ab; PDBTitle: nmr conformer closest to the mean coordinates of the domain 513-651 of2 the sars-cov nonstructural protein nsp3
38 | c2kqvA_ |
| not modelled | 8.4 | 13 | PDB header:viral protein Chain: A: PDB Molecule:non-structural protein 3; PDBTitle: sars coronavirus-unique domain (sud): three-domain molecular2 architecture in solution and rna binding. i: structure of the sud-m3 domain of sud-mc
39 | d2ixoa1 |
| not modelled | 8.4 | 27 | Fold:PTPA-like Superfamily:PTPA-like Family:PTPA-like
40 | d2fmma1 |
| not modelled | 8.2 | 71 | Fold:SH3-like barrel Superfamily:Chromo domain-like Family:Chromo domain
41 | c2i6oA_ |
| not modelled | 7.9 | 26 | PDB header:hydrolase Chain: A: PDB Molecule:sulfolobus solfataricus protein tyrosine PDBTitle: crystal structure of the complex of the archaeal sulfolobus2 ptp-fold phosphatase with phosphopeptides n-g-(p)y-k-n
42 | d1e3ja2 |
| not modelled | 7.9 | 16 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Alcohol dehydrogenase-like, C-terminal domain
43 | d1nb5i_ |
| not modelled | 7.4 | 20 | Fold:Cystatin-like Superfamily:Cystatin/monellin Family:Cystatins
44 | c2k0sA_ |
| not modelled | 7.0 | 5 | PDB header:structural protein Chain: A: PDB Molecule:adp-ribosylation factor-like protein 2-binding PDBTitle: solution nmr structure of protein bc066483
45 | d2inwa1 |
| not modelled | 7.0 | 28 | Fold:Profilin-like Superfamily:YeeU-like Family:YagB/YeeU/YfjZ-like
46 | d1nxza2 |
| not modelled | 6.8 | 27 | Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YggJ C-terminal domain-like
47 | c3sb1B_ |
| not modelled | 6.8 | 19 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hydrogenase expression protein; PDBTitle: hydrogenase expression protein huph from thiobacillus denitrificans2 atcc 25259
48 | c3s4oB_ |
| not modelled | 6.8 | 13 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein tyrosine phosphatase-like protein; PDBTitle: protein tyrosine phosphatase (putative) from leishmania major
49 | d1hvxa1 |
| not modelled | 6.4 | 28 | Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:alpha-Amylases, C-terminal beta-sheet domain
50 | d2di0a1 |
| not modelled | 6.3 | 18 | Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:CUE domain
51 | c2wsc1_ |
| not modelled | 6.3 | 26 | PDB header:photosynthesis Chain: 1: PDB Molecule:at3g54890; PDBTitle: improved model of plant photosystem i
52 | d1eg3a2 |
| not modelled | 6.2 | 29 | Fold:EF Hand-like Superfamily:EF-hand Family:EF-hand modules in multidomain proteins
53 | d1dwka2 |
| not modelled | 6.2 | 23 | Fold:Cyanase C-terminal domain Superfamily:Cyanase C-terminal domain Family:Cyanase C-terminal domain
54 | c1uwyA_ |
| not modelled | 6.1 | 16 | PDB header:hydrolase Chain: A: PDB Molecule:carboxypeptidase m; PDBTitle: crystal structure of human carboxypeptidase m
55 | d1p16a1 |
| not modelled | 6.1 | 23 | Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:DNA ligase/mRNA capping enzyme postcatalytic domain
56 | d1k18a_ |
| not modelled | 6.0 | 60 | Fold:Zinc finger domain of DNA polymerase-alpha Superfamily:Zinc finger domain of DNA polymerase-alpha Family:Zinc finger domain of DNA polymerase-alpha
57 | c1hn3A_ |
| not modelled | 5.8 | 26 | PDB header:antitumor protein Chain: A: PDB Molecule:p19 arf protein; PDBTitle: solution structure of the n-terminal 37 amino acids of the2 mouse arf tumor suppressor protein
58 | c1ztoA_ |
| not modelled | 5.7 | 23 | PDB header:potassium channel Chain: A: PDB Molecule:potassium channel protein rck4; PDBTitle: inactivation gate of potassium channel rck4, nmr, 82 structures
59 | c3kw2A_ |
| not modelled | 5.7 | 33 | PDB header:transferase Chain: A: PDB Molecule:probable r-rna methyltransferase; PDBTitle: crystal structure of probable rrna-methyltransferase from2 porphyromonas gingivalis
60 | c1t8jA_ |
| not modelled | 5.6 | 50 | PDB header:de novo protein Chain: A: PDB Molecule:bba5; PDBTitle: nmr structure of bba5, a compact, independently folded bba2 motif
61 | d2fmla1 |
| not modelled | 5.5 | 75 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Nudix-associated domain
62 | c1y32A_ |
| not modelled | 5.5 | 100 | PDB header:unknown function Chain: A: PDB Molecule:humanin; PDBTitle: nmr structure of humanin in 30% tfe solution
63 | c2z0vA_ |
| not modelled | 5.4 | 15 | PDB header:endocytosis Chain: A: PDB Molecule:sh3-containing grb2-like protein 3; PDBTitle: crystal structure of bar domain of endophilin-iii
64 | d1r9ja3 |
| not modelled | 5.4 | 19 | Fold:TK C-terminal domain-like Superfamily:TK C-terminal domain-like Family:Transketolase C-terminal domain-like
65 | c1cpbB_ |
| not modelled | 5.4 | 20 | PDB header:hydrolase (c-terminal peptidase) Chain: B: PDB Molecule:carboxypeptidase b; PDBTitle: structure of carboxypeptidase b at 2.8 angstroms resolution
66 | c3entB_ |
| not modelled | 5.4 | 38 | PDB header:structural protein Chain: B: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of nitrollin, a betagamma-crystallin from2 nitrosospira multiformis-in alternate space group (p65)
67 | d2j7ja3 |
| not modelled | 5.4 | 20 | Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2
68 | c2egwB_ |
| not modelled | 5.3 | 40 | PDB header:rna methyltransferase Chain: B: PDB Molecule:upf0088 protein aq_165; PDBTitle: crystal structure of rrna methyltransferase with sah ligand
69 | c2bn8A_ |
| not modelled | 5.3 | 42 | PDB header:cell cycle protein Chain: A: PDB Molecule:cell division activator ceda; PDBTitle: solution structure and interactions of the e.coli cell2 division activator protein ceda
70 | c3ulxA_ |
| not modelled | 5.3 | 32 | PDB header:dna binding protein Chain: A: PDB Molecule:stress-induced transcription factor nac1; PDBTitle: crystal structural of the conserved domain of rice stress-responsive2 nac1
71 | d2ptfa1 |
| not modelled | 5.2 | 15 | Fold:Split barrel-like Superfamily:FMN-binding split barrel Family:MTH863-like
72 | c3aqoD_ |
| not modelled | 5.2 | 21 | PDB header:membrane protein Chain: D: PDB Molecule:probable secdf protein-export membrane protein; PDBTitle: structure and function of a membrane component secdf that enhances2 protein export
73 | d1ut7a_ |
| not modelled | 5.1 | 29 | Fold:NAC domain Superfamily:NAC domain Family:NAC domain
74 | c2boaB_ |
| not modelled | 5.1 | 20 | PDB header:hydrolase Chain: B: PDB Molecule:carboxypeptidase a4; PDBTitle: human procarboxypeptidase a4.