Phyre 2 Results for P0ADN2

Phyre Home | Retrieve Phyre Job Id

Email | l.a.kelley@imperial.ac.uk
Description | P0ADN2
Date | Thu Jan 5 11:21:25 GMT 2012
Unique Job ID | 3d423dd00147618d

Summary |

Top model
Image coloured by rainbow N → C terminus
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Model (left) based on template d1b74a1
Top template information
Fold:ATC-like Superfamily:Aspartate/glutamate racemase Family:Aspartate/glutamate racemase
Confidence and coverage
Confidence: | 41.0% | Coverage: | 9%
10 residues ( 9% of your sequence) have been modelled with 41.0% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | A | E | S | F | T | T | T | N | R | Y | F | D | N | K | H | Y | P | R | G | F | S | R | H | G | D | F | T | I | K | E | A | Q | L | L | E | R | H | G | Y | A | F | N | E | L | D | L | G | K | R | E | P | V | T | E | E | E | K | L | F
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Disorder |  | ? | ? |  |  |  |  | ? | ? | ? | ? | ? |  | ? |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | .
Sequence |  | V | A | V | C | R | G | E | R | E | P | V | T | E | A | E | R | V | W | S | K | Y | M | T | R | I | K | R | P | K | R | F | H | T | L | S | G | G | K | P | Q | V | E | G | A | E | D | Y | T | D | S | D | D
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| d1b74a1 |

### PDB 1b74 chain A domain 1

Region: 11 - 20
Aligned: 10
Modelled: 10
Confidence: 41.0%
Identity: 30%
Fold: ATC-like
Superfamily: Aspartate/glutamate racemase
Family: Aspartate/glutamate racemase

Phyre2
2 |
| c2z7bA_ |

### PDB 2z7b chain A

Region: 36 - 87
Aligned: 47
Modelled: 52
Confidence: 39.1%
Identity: 15%
PDB header:lyase
Chain: A: PDB Molecule:mlr6791 protein;
PDBTitle: crystal structure of mesorhizobium loti 3-hydroxy-2-methylpyridine-4,2 5-dicarboxylate decarboxylase

Phyre2
3 |
| c3e0dA_ |

### PDB 3e0d chain A

Region: 25 - 78
Aligned: 47
Modelled: 54
Confidence: 30.7%
Identity: 28%
PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase iii subunit alpha;
PDBTitle: insights into the replisome from the crystral structure of2 the ternary complex of the eubacterial dna polymerase iii3 alpha-subunit

Phyre2
4 |
| d2efva1 |

### PDB 2efv chain A domain 1

Region: 16 - 47
Aligned: 32
Modelled: 32
Confidence: 28.8%
Identity: 22%
Fold: Ribbon-helix-helix
Superfamily: Ribbon-helix-helix
Family: MJ0366-like

Phyre2
5 |
| c2jfnA_ |

### PDB 2jfn chain A

Region: 11 - 20
Aligned: 10
Modelled: 10
Confidence: 25.8%
Identity: 50%
PDB header:isomerase
Chain: A: PDB Molecule:glutamate racemase;
PDBTitle: crystal structure of escherichia coli glutamate racemase2 in complex with l-glutamate and activator udp-murnac-ala

Phyre2
6 |
| c2ohoA_ |

### PDB 2oho chain A

Region: 11 - 20
Aligned: 10
Modelled: 10
Confidence: 23.4%
Identity: 30%
PDB header:isomerase
Chain: A: PDB Molecule:glutamate racemase;
PDBTitle: structural basis for glutamate racemase inhibitor

Phyre2
7 |
| d1or7c_ |

### PDB 1or7 chain C

Region: 41 - 81
Aligned: 32
Modelled: 41
Confidence: 23.4%
Identity: 19%
Fold: N-terminal, cytoplasmic domain of anti-sigmaE factor RseA
Superfamily: N-terminal, cytoplasmic domain of anti-sigmaE factor RseA
Family: N-terminal, cytoplasmic domain of anti-sigmaE factor RseA

Phyre2
8 |
| c1or7C_ |

### PDB 1or7 chain C

Region: 41 - 81
Aligned: 32
Modelled: 41
Confidence: 23.4%
Identity: 19%
PDB header:transcription
Chain: C: PDB Molecule:sigma-e factor negative regulatory protein;
PDBTitle: crystal structure of escherichia coli sigmae with the cytoplasmic2 domain of its anti-sigma rsea

Phyre2
9 |
| c2jfoB_ |

### PDB 2jfo chain B

Region: 11 - 20
Aligned: 10
Modelled: 10
Confidence: 22.7%
Identity: 30%
PDB header:isomerase
Chain: B: PDB Molecule:glutamate racemase;
PDBTitle: crystal structure of enterococcus faecalis glutamate2 racemase in complex with d- and l-glutamate

Phyre2
10 |
| c3pt8B_ |

### PDB 3pt8 chain B

Region: 17 - 85
Aligned: 69
Modelled: 69
Confidence: 21.1%
Identity: 9%
PDB header:oxygen transport
Chain: B: PDB Molecule:hemoglobin iii;
PDBTitle: structure of hbii-iii-cn from lucina pectinata at ph 5.0

Phyre2
11 |
| c2qdjA_ |

### PDB 2qdj chain A

Region: 56 - 83
Aligned: 28
Modelled: 28
Confidence: 20.1%
Identity: 32%
PDB header:antitumor protein
Chain: A: PDB Molecule:retinoblastoma-associated protein;
PDBTitle: crystal structure of the retinoblastoma protein n-domain2 provides insight into tumor suppression, ligand3 interaction and holoprotein architecture

Phyre2
12 |
| c3outC_ |

### PDB 3out chain C

Region: 11 - 20
Aligned: 10
Modelled: 10
Confidence: 19.8%
Identity: 30%
PDB header:isomerase
Chain: C: PDB Molecule:glutamate racemase;
PDBTitle: crystal structure of glutamate racemase from francisella tularensis2 subsp. tularensis schu s4 in complex with d-glutamate.

Phyre2
13 |
| c2jfzB_ |

### PDB 2jfz chain B

Region: 11 - 20
Aligned: 10
Modelled: 10
Confidence: 19.7%
Identity: 40%
PDB header:isomerase
Chain: B: PDB Molecule:glutamate racemase;
PDBTitle: crystal structure of helicobacter pylori glutamate racemase2 in complex with d-glutamate and an inhibitor

Phyre2
14 |
| c3hfrA_ |

### PDB 3hfr chain A

Region: 11 - 20
Aligned: 10
Modelled: 10
Confidence: 17.4%
Identity: 30%
PDB header:isomerase
Chain: A: PDB Molecule:glutamate racemase;
PDBTitle: crystal structure of glutamate racemase from listeria monocytogenes

Phyre2
15 |
| c2jfqA_ |

### PDB 2jfq chain A

Region: 11 - 20
Aligned: 10
Modelled: 10
Confidence: 17.2%
Identity: 30%
PDB header:isomerase
Chain: A: PDB Molecule:glutamate racemase;
PDBTitle: crystal structure of staphylococcus aureus glutamate2 racemase in complex with d-glutamate

Phyre2
16 |
| c2dwuA_ |

### PDB 2dwu chain A

Region: 11 - 20
Aligned: 10
Modelled: 10
Confidence: 16.9%
Identity: 40%
PDB header:isomerase
Chain: A: PDB Molecule:glutamate racemase;
PDBTitle: crystal structure of glutamate racemase isoform race1 from bacillus2 anthracis

Phyre2
17 |
| c2gzmB_ |

### PDB 2gzm chain B

Region: 11 - 20
Aligned: 10
Modelled: 10
Confidence: 16.7%
Identity: 30%
PDB header:isomerase
Chain: B: PDB Molecule:glutamate racemase;
PDBTitle: crystal structure of the glutamate racemase from bacillus2 anthracis

Phyre2
18 |
| c1b74A_ |

### PDB 1b74 chain A

Region: 11 - 20
Aligned: 10
Modelled: 10
Confidence: 16.7%
Identity: 30%
PDB header:isomerase
Chain: A: PDB Molecule:glutamate racemase;
PDBTitle: glutamate racemase from aquifex pyrophilus

Phyre2
19 |
| d1pl8a2 |

### PDB 1pl8 chain A domain 2

Region: 28 - 52
Aligned: 25
Modelled: 25
Confidence: 16.6%
Identity: 20%
Fold: NAD(P)-binding Rossmann-fold domains
Superfamily: NAD(P)-binding Rossmann-fold domains
Family: Alcohol dehydrogenase-like, C-terminal domain

Phyre2
20 |
| c1zuwA_ |

### PDB 1zuw chain A

Region: 11 - 20
Aligned: 10
Modelled: 10
Confidence: 15.5%
Identity: 40%
PDB header:isomerase
Chain: A: PDB Molecule:glutamate racemase 1;
PDBTitle: crystal structure of b.subtilis glutamate racemase (race) with d-glu

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d1b74a1 |
|  | 41.0 | 30 | Fold:ATC-like Superfamily:Aspartate/glutamate racemase Family:Aspartate/glutamate racemase
2 | c2z7bA_ |
|  | 39.1 | 15 | PDB header:lyase Chain: A: PDB Molecule:mlr6791 protein; PDBTitle: crystal structure of mesorhizobium loti 3-hydroxy-2-methylpyridine-4,2 5-dicarboxylate decarboxylase
3 | c3e0dA_ |
|  | 30.7 | 28 | PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase iii subunit alpha; PDBTitle: insights into the replisome from the crystral structure of2 the ternary complex of the eubacterial dna polymerase iii3 alpha-subunit
4 | d2efva1 |
|  | 28.8 | 22 | Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:MJ0366-like
5 | c2jfnA_ |
|  | 25.8 | 50 | PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of escherichia coli glutamate racemase2 in complex with l-glutamate and activator udp-murnac-ala
6 | c2ohoA_ |
|  | 23.4 | 30 | PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: structural basis for glutamate racemase inhibitor
7 | d1or7c_ |
|  | 23.4 | 19 | Fold:N-terminal, cytoplasmic domain of anti-sigmaE factor RseA Superfamily:N-terminal, cytoplasmic domain of anti-sigmaE factor RseA Family:N-terminal, cytoplasmic domain of anti-sigmaE factor RseA
8 | c1or7C_ |
|  | 23.4 | 19 | PDB header:transcription Chain: C: PDB Molecule:sigma-e factor negative regulatory protein; PDBTitle: crystal structure of escherichia coli sigmae with the cytoplasmic2 domain of its anti-sigma rsea
9 | c2jfoB_ |
|  | 22.7 | 30 | PDB header:isomerase Chain: B: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of enterococcus faecalis glutamate2 racemase in complex with d- and l-glutamate
10 | c3pt8B_ |
|  | 21.1 | 9 | PDB header:oxygen transport Chain: B: PDB Molecule:hemoglobin iii; PDBTitle: structure of hbii-iii-cn from lucina pectinata at ph 5.0
11 | c2qdjA_ |
|  | 20.1 | 32 | PDB header:antitumor protein Chain: A: PDB Molecule:retinoblastoma-associated protein; PDBTitle: crystal structure of the retinoblastoma protein n-domain2 provides insight into tumor suppression, ligand3 interaction and holoprotein architecture
12 | c3outC_ |
|  | 19.8 | 30 | PDB header:isomerase Chain: C: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of glutamate racemase from francisella tularensis2 subsp. tularensis schu s4 in complex with d-glutamate.
13 | c2jfzB_ |
|  | 19.7 | 40 | PDB header:isomerase Chain: B: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of helicobacter pylori glutamate racemase2 in complex with d-glutamate and an inhibitor
14 | c3hfrA_ |
|  | 17.4 | 30 | PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of glutamate racemase from listeria monocytogenes
15 | c2jfqA_ |
|  | 17.2 | 30 | PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of staphylococcus aureus glutamate2 racemase in complex with d-glutamate
16 | c2dwuA_ |
|  | 16.9 | 40 | PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of glutamate racemase isoform race1 from bacillus2 anthracis
17 | c2gzmB_ |
|  | 16.7 | 30 | PDB header:isomerase Chain: B: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of the glutamate racemase from bacillus2 anthracis
18 | c1b74A_ |
|  | 16.7 | 30 | PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: glutamate racemase from aquifex pyrophilus
19 | d1pl8a2 |
|  | 16.6 | 20 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Alcohol dehydrogenase-like, C-terminal domain
20 | c1zuwA_ |
|  | 15.5 | 40 | PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase 1; PDBTitle: crystal structure of b.subtilis glutamate racemase (race) with d-glu
21 | d1uwya2 |
| not modelled | 14.5 | 16 | Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Pancreatic carboxypeptidases
22 | c2qfiB_ |
| not modelled | 14.4 | 9 | PDB header:transport protein Chain: B: PDB Molecule:ferrous-iron efflux pump fief; PDBTitle: structure of the zinc transporter yiip
23 | d1skza1 |
| not modelled | 14.0 | 50 | Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Leech antihemostatic proteins Family:Huristasin-like
24 | d2qfia2 |
| not modelled | 13.7 | 9 | Fold:Cation efflux protein transmembrane domain-like Superfamily:Cation efflux protein transmembrane domain-like Family:Cation efflux protein transmembrane domain-like
25 | c3ajfA_ |
| not modelled | 11.4 | 19 | PDB header:viral protein Chain: A: PDB Molecule:non-structural protein 3; PDBTitle: structural insigths into dsrna binding and rna silencing suppression2 by ns3 protein of rice hoja blanca tenuivirus
26 | d1ckma1 |
| not modelled | 11.3 | 8 | Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:DNA ligase/mRNA capping enzyme postcatalytic domain
27 | c2kvsA_ |
| not modelled | 11.3 | 43 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein mw0776; PDBTitle: nmr solution structure of q7a1e8 protein from staphylococcus2 aureus: northeast structural genomics consortium target:3 zr215
28 | c3r6uA_ |
| not modelled | 10.9 | 7 | PDB header:transport protein Chain: A: PDB Molecule:choline-binding protein; PDBTitle: crystal structure of choline binding protein opubc from bacillus2 subtilis
29 | d2ea9a1 |
| not modelled | 9.6 | 31 | Fold:Profilin-like Superfamily:YeeU-like Family:YagB/YeeU/YfjZ-like
30 | c3d9oB_ |
| not modelled | 9.6 | 8 | PDB header:transcription Chain: B: PDB Molecule:rna-binding protein 16; PDBTitle: snapshots of the rna processing factor scaf8 bound to different2 phosphorylated forms of the carboxy-terminal domain of rna-polymerase3 ii
31 | c2bnlE_ |
| not modelled | 9.5 | 12 | PDB header:stress-response Chain: E: PDB Molecule:modulator protein rsbr; PDBTitle: the structure of the n-terminal domain of rsbr
32 | c3fp5A_ |
| not modelled | 9.4 | 9 | PDB header:lipid binding protein Chain: A: PDB Molecule:acyl-coa binding protein; PDBTitle: crystal structure of acbp from moniliophthora perniciosa
33 | c1vjqB_ |
| not modelled | 9.3 | 25 | PDB header:structural genomics, de novo protein Chain: B: PDB Molecule:designed protein; PDBTitle: designed protein based on backbone conformation of2 procarboxypeptidase-a (1aye) with sidechains chosen for maximal3 predicted stability.
34 | d2h28a1 |
| not modelled | 9.2 | 28 | Fold:Profilin-like Superfamily:YeeU-like Family:YagB/YeeU/YfjZ-like
35 | c3dofB_ |
| not modelled | 8.8 | 5 | PDB header:signaling protein/hydrolase Chain: B: PDB Molecule:adp-ribosylation factor-like protein 2-binding PDBTitle: complex of arl2 and bart, crystal form 2
36 | c2hnhA_ |
| not modelled | 8.8 | 17 | PDB header:transferase Chain: A: PDB Molecule:dna polymerase iii alpha subunit; PDBTitle: crystal structure of the catalytic alpha subunit of e. coli2 replicative dna polymerase iii
37 | c2jzfA_ |
| not modelled | 8.7 | 50 | PDB header:viral protein Chain: A: PDB Molecule:replicase polyprotein 1ab; PDBTitle: nmr conformer closest to the mean coordinates of the domain 513-651 of2 the sars-cov nonstructural protein nsp3
38 | c2kqvA_ |
| not modelled | 8.4 | 13 | PDB header:viral protein Chain: A: PDB Molecule:non-structural protein 3; PDBTitle: sars coronavirus-unique domain (sud): three-domain molecular2 architecture in solution and rna binding. i: structure of the sud-m3 domain of sud-mc
39 | d2ixoa1 |
| not modelled | 8.4 | 27 | Fold:PTPA-like Superfamily:PTPA-like Family:PTPA-like
40 | d2fmma1 |
| not modelled | 8.2 | 71 | Fold:SH3-like barrel Superfamily:Chromo domain-like Family:Chromo domain
41 | c2i6oA_ |
| not modelled | 7.9 | 26 | PDB header:hydrolase Chain: A: PDB Molecule:sulfolobus solfataricus protein tyrosine PDBTitle: crystal structure of the complex of the archaeal sulfolobus2 ptp-fold phosphatase with phosphopeptides n-g-(p)y-k-n
42 | d1e3ja2 |
| not modelled | 7.9 | 16 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Alcohol dehydrogenase-like, C-terminal domain
43 | d1nb5i_ |
| not modelled | 7.4 | 20 | Fold:Cystatin-like Superfamily:Cystatin/monellin Family:Cystatins
44 | c2k0sA_ |
| not modelled | 7.0 | 5 | PDB header:structural protein Chain: A: PDB Molecule:adp-ribosylation factor-like protein 2-binding PDBTitle: solution nmr structure of protein bc066483
45 | d2inwa1 |
| not modelled | 7.0 | 28 | Fold:Profilin-like Superfamily:YeeU-like Family:YagB/YeeU/YfjZ-like
46 | d1nxza2 |
| not modelled | 6.8 | 27 | Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YggJ C-terminal domain-like
47 | c3sb1B_ |
| not modelled | 6.8 | 19 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hydrogenase expression protein; PDBTitle: hydrogenase expression protein huph from thiobacillus denitrificans2 atcc 25259
48 | c3s4oB_ |
| not modelled | 6.8 | 13 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein tyrosine phosphatase-like protein; PDBTitle: protein tyrosine phosphatase (putative) from leishmania major
49 | d1hvxa1 |
| not modelled | 6.4 | 28 | Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:alpha-Amylases, C-terminal beta-sheet domain
50 | d2di0a1 |
| not modelled | 6.3 | 18 | Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:CUE domain
51 | c2wsc1_ |
| not modelled | 6.3 | 26 | PDB header:photosynthesis Chain: 1: PDB Molecule:at3g54890; PDBTitle: improved model of plant photosystem i
52 | d1eg3a2 |
| not modelled | 6.2 | 29 | Fold:EF Hand-like Superfamily:EF-hand Family:EF-hand modules in multidomain proteins
53 | d1dwka2 |
| not modelled | 6.2 | 23 | Fold:Cyanase C-terminal domain Superfamily:Cyanase C-terminal domain Family:Cyanase C-terminal domain
54 | c1uwyA_ |
| not modelled | 6.1 | 16 | PDB header:hydrolase Chain: A: PDB Molecule:carboxypeptidase m; PDBTitle: crystal structure of human carboxypeptidase m
55 | d1p16a1 |
| not modelled | 6.1 | 23 | Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:DNA ligase/mRNA capping enzyme postcatalytic domain
56 | d1k18a_ |
| not modelled | 6.0 | 60 | Fold:Zinc finger domain of DNA polymerase-alpha Superfamily:Zinc finger domain of DNA polymerase-alpha Family:Zinc finger domain of DNA polymerase-alpha
57 | c1hn3A_ |
| not modelled | 5.8 | 26 | PDB header:antitumor protein Chain: A: PDB Molecule:p19 arf protein; PDBTitle: solution structure of the n-terminal 37 amino acids of the2 mouse arf tumor suppressor protein
58 | c1ztoA_ |
| not modelled | 5.7 | 23 | PDB header:potassium channel Chain: A: PDB Molecule:potassium channel protein rck4; PDBTitle: inactivation gate of potassium channel rck4, nmr, 82 structures
59 | c3kw2A_ |
| not modelled | 5.7 | 33 | PDB header:transferase Chain: A: PDB Molecule:probable r-rna methyltransferase; PDBTitle: crystal structure of probable rrna-methyltransferase from2 porphyromonas gingivalis
60 | c1t8jA_ |
| not modelled | 5.6 | 50 | PDB header:de novo protein Chain: A: PDB Molecule:bba5; PDBTitle: nmr structure of bba5, a compact, independently folded bba2 motif
61 | d2fmla1 |
| not modelled | 5.5 | 75 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Nudix-associated domain
62 | c1y32A_ |
| not modelled | 5.5 | 100 | PDB header:unknown function Chain: A: PDB Molecule:humanin; PDBTitle: nmr structure of humanin in 30% tfe solution
63 | c2z0vA_ |
| not modelled | 5.4 | 15 | PDB header:endocytosis Chain: A: PDB Molecule:sh3-containing grb2-like protein 3; PDBTitle: crystal structure of bar domain of endophilin-iii
64 | d1r9ja3 |
| not modelled | 5.4 | 19 | Fold:TK C-terminal domain-like Superfamily:TK C-terminal domain-like Family:Transketolase C-terminal domain-like
65 | c1cpbB_ |
| not modelled | 5.4 | 20 | PDB header:hydrolase (c-terminal peptidase) Chain: B: PDB Molecule:carboxypeptidase b; PDBTitle: structure of carboxypeptidase b at 2.8 angstroms resolution
66 | c3entB_ |
| not modelled | 5.4 | 38 | PDB header:structural protein Chain: B: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of nitrollin, a betagamma-crystallin from2 nitrosospira multiformis-in alternate space group (p65)
67 | d2j7ja3 |
| not modelled | 5.4 | 20 | Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2
68 | c2egwB_ |
| not modelled | 5.3 | 40 | PDB header:rna methyltransferase Chain: B: PDB Molecule:upf0088 protein aq_165; PDBTitle: crystal structure of rrna methyltransferase with sah ligand
69 | c2bn8A_ |
| not modelled | 5.3 | 42 | PDB header:cell cycle protein Chain: A: PDB Molecule:cell division activator ceda; PDBTitle: solution structure and interactions of the e.coli cell2 division activator protein ceda
70 | c3ulxA_ |
| not modelled | 5.3 | 32 | PDB header:dna binding protein Chain: A: PDB Molecule:stress-induced transcription factor nac1; PDBTitle: crystal structural of the conserved domain of rice stress-responsive2 nac1
71 | d2ptfa1 |
| not modelled | 5.2 | 15 | Fold:Split barrel-like Superfamily:FMN-binding split barrel Family:MTH863-like
72 | c3aqoD_ |
| not modelled | 5.2 | 21 | PDB header:membrane protein Chain: D: PDB Molecule:probable secdf protein-export membrane protein; PDBTitle: structure and function of a membrane component secdf that enhances2 protein export
73 | d1ut7a_ |
| not modelled | 5.1 | 29 | Fold:NAC domain Superfamily:NAC domain Family:NAC domain
74 | c2boaB_ |
| not modelled | 5.1 | 20 | PDB header:hydrolase Chain: B: PDB Molecule:carboxypeptidase a4; PDBTitle: human procarboxypeptidase a4.

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0