Phyre 2 Results for P0AEZ3

Phyre Home | Retrieve Phyre Job Id

Email | l.a.kelley@imperial.ac.uk
Description | P0AEZ3
Date | Thu Jan 5 11:24:41 GMT 2012
Unique Job ID | 3d2fc27cdb0a587b

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c3q9lB_
Top template information
PDB header:cell cycle, hydrolase Chain: B: PDB Molecule:septum site-determining protein mind; PDBTitle: the structure of the dimeric e.coli mind-atp complex
Confidence and coverage
Confidence: | 100.0% | Coverage: | 95%
257 residues ( 95% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | A | R | I | I | V | V | T | S | G | K | G | G | V | G | K | T | T | S | S | A | A | I | A | T | G | L | A | Q | K | G | K | K | T | V | V | I | D | F | D | I | G | L | R | N | L | D | L | I | M | G | C | E | R | R | V | V | Y | D | F
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | V | N | V | I | Q | G | D | A | T | L | N | Q | A | L | I | K | D | K | R | T | E | N | L | Y | I | L | P | A | S | Q | T | R | D | K | D | A | L | T | R | E | G | V | A | K | V | L | D | D | L | K | A | M | D | F | E | F | I | V | C | D
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  | ? |  |  |  | ? | ? |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | S | P | A | G | I | E | T | G | A | L | M | A | L | Y | F | A | D | E | A | I | I | T | T | N | P | E | V | S | S | V | R | D | S | D | R | I | L | G | I | L | A | S | K | S | R | R | A | E | N | G | E | E | P | I | K | E | H | L | L | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  | ? | ? | ? |  | ? |  |  | ? |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | T | R | Y | N | P | G | R | V | S | R | G | D | M | L | S | M | E | D | V | L | E | I | L | R | I | K | L | V | G | V | I | P | E | D | Q | S | V | L | R | A | S | N | Q | G | E | P | V | I | L | D | I | N | A | D | A | G | K | A | Y | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  | ? |  | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270
Sequence |  | D | T | V | E | R | L | L | G | E | E | R | P | F | R | F | I | E | E | E | K | K | G | F | L | K | R | L | F | G | G
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c3q9lB_ |

### PDB 3q9l chain B

Region: 2 - 258
Aligned: 257
Modelled: 257
Confidence: 100.0%
Identity: 100%
PDB header:cell cycle, hydrolase
Chain: B: PDB Molecule:septum site-determining protein mind;
PDBTitle: the structure of the dimeric e.coli mind-atp complex

Phyre2
2 |
| c3endA_ |

### PDB 3end chain A

Region: 2 - 269
Aligned: 255
Modelled: 268
Confidence: 100.0%
Identity: 18%
PDB header:oxidoreductase
Chain: A: PDB Molecule:light-independent protochlorophyllide reductase
PDBTitle: crystal structure of the l protein of rhodobacter2 sphaeroides light-independent protochlorophyllide3 reductase (bchl) with mgadp bound: a homologue of the4 nitrogenase fe protein

Phyre2
3 |
| d2afhe1 |

### PDB 2afh chain E domain 1

Region: 3 - 268
Aligned: 257
Modelled: 266
Confidence: 100.0%
Identity: 17%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nitrogenase iron protein-like

Phyre2
4 |
| d1g3qa_ |

### PDB 1g3q chain A

Region: 1 - 248
Aligned: 234
Modelled: 248
Confidence: 100.0%
Identity: 28%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nitrogenase iron protein-like

Phyre2
5 |
| d1iona_ |

### PDB 1ion chain A

Region: 1 - 249
Aligned: 235
Modelled: 244
Confidence: 100.0%
Identity: 28%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nitrogenase iron protein-like

Phyre2
6 |
| d1cp2a_ |

### PDB 1cp2 chain A

Region: 3 - 267
Aligned: 256
Modelled: 265
Confidence: 100.0%
Identity: 14%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nitrogenase iron protein-like

Phyre2
7 |
| c3ea0B_ |

### PDB 3ea0 chain B

Region: 2 - 246
Aligned: 232
Modelled: 239
Confidence: 100.0%
Identity: 20%
PDB header:hydrolase
Chain: B: PDB Molecule:atpase, para family;
PDBTitle: crystal structure of para family atpase from chlorobium tepidum tls

Phyre2
8 |
| c2ozeA_ |

### PDB 2oze chain A

Region: 2 - 258
Aligned: 255
Modelled: 257
Confidence: 100.0%
Identity: 17%
PDB header:dna binding protein
Chain: A: PDB Molecule:orf delta';
PDBTitle: the crystal structure of delta protein of psm19035 from2 streptoccocus pyogenes

Phyre2
9 |
| d1hyqa_ |

### PDB 1hyq chain A

Region: 3 - 246
Aligned: 229
Modelled: 244
Confidence: 100.0%
Identity: 30%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nitrogenase iron protein-like

Phyre2
10 |
| c1hyqA_ |

### PDB 1hyq chain A

Region: 3 - 246
Aligned: 229
Modelled: 244
Confidence: 100.0%
Identity: 30%
PDB header:cell cycle
Chain: A: PDB Molecule:cell division inhibitor (mind-1);
PDBTitle: mind bacterial cell division regulator from a. fulgidus

Phyre2
11 |
| c3kjgB_ |

### PDB 3kjg chain B

Region: 5 - 249
Aligned: 228
Modelled: 237
Confidence: 100.0%
Identity: 21%
PDB header:hydrolase, metal binding protein
Chain: B: PDB Molecule:co dehydrogenase/acetyl-coa synthase complex, accessory
PDBTitle: adp-bound state of cooc1

Phyre2
12 |
| c3ez6B_ |

### PDB 3ez6 chain B

Region: 2 - 249
Aligned: 247
Modelled: 248
Confidence: 100.0%
Identity: 17%
PDB header:dna binding protein
Chain: B: PDB Molecule:plasmid partition protein a;
PDBTitle: structure of para-adp complex:tetragonal form

Phyre2
13 |
| c2bekB_ |

### PDB 2bek chain B

Region: 3 - 249
Aligned: 237
Modelled: 247
Confidence: 100.0%
Identity: 18%
PDB header:chromosome segregation
Chain: B: PDB Molecule:segregation protein;
PDBTitle: structure of the bacterial chromosome segregation protein2 soj

Phyre2
14 |
| c2ph1A_ |

### PDB 2ph1 chain A

Region: 2 - 232
Aligned: 228
Modelled: 231
Confidence: 100.0%
Identity: 15%
PDB header:ligand binding protein
Chain: A: PDB Molecule:nucleotide-binding protein;
PDBTitle: crystal structure of nucleotide-binding protein af2382 from2 archaeoglobus fulgidus, northeast structural genomics target gr165

Phyre2
15 |
| c2xj9B_ |

### PDB 2xj9 chain B

Region: 2 - 246
Aligned: 233
Modelled: 233
Confidence: 100.0%
Identity: 15%
PDB header:replication
Chain: B: PDB Molecule:mipz;
PDBTitle: dimer structure of the bacterial cell division regulator mipz

Phyre2
16 |
| c3fkqA_ |

### PDB 3fkq chain A

Region: 1 - 225
Aligned: 214
Modelled: 223
Confidence: 100.0%
Identity: 18%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ntrc-like two-domain protein;
PDBTitle: crystal structure of ntrc-like two-domain protein (rer070207001320)2 from eubacterium rectale at 2.10 a resolution

Phyre2
17 |
| c3ezfA_ |

### PDB 3ezf chain A

Region: 1 - 223
Aligned: 220
Modelled: 223
Confidence: 100.0%
Identity: 16%
PDB header:biosynthetic protein
Chain: A: PDB Molecule:para;
PDBTitle: partition protein

Phyre2
18 |
| c3k9gA_ |

### PDB 3k9g chain A

Region: 2 - 223
Aligned: 209
Modelled: 222
Confidence: 100.0%
Identity: 19%
PDB header:biosynthetic protein
Chain: A: PDB Molecule:pf-32 protein;
PDBTitle: crystal structure of a plasmid partition protein from borrelia2 burgdorferi at 2.25a resolution, iodide soak

Phyre2
19 |
| c3pg5A_ |

### PDB 3pg5 chain A

Region: 2 - 168
Aligned: 167
Modelled: 166
Confidence: 100.0%
Identity: 18%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of protein dip2308 from corynebacterium diphtheriae,2 northeast structural genomics consortium target cdr78

Phyre2
20 |
| c3cwqB_ |

### PDB 3cwq chain B

Region: 4 - 249
Aligned: 189
Modelled: 204
Confidence: 100.0%
Identity: 26%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:para family chromosome partitioning protein;
PDBTitle: crystal structure of chromosome partitioning protein (para) in complex2 with adp from synechocystis sp. northeast structural genomics3 consortium target sgr89

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c3q9lB_ |
|  | 100.0 | 100 | PDB header:cell cycle, hydrolase Chain: B: PDB Molecule:septum site-determining protein mind; PDBTitle: the structure of the dimeric e.coli mind-atp complex
2 | c3endA_ |
|  | 100.0 | 18 | PDB header:oxidoreductase Chain: A: PDB Molecule:light-independent protochlorophyllide reductase PDBTitle: crystal structure of the l protein of rhodobacter2 sphaeroides light-independent protochlorophyllide3 reductase (bchl) with mgadp bound: a homologue of the4 nitrogenase fe protein
3 | d2afhe1 |
|  | 100.0 | 17 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
4 | d1g3qa_ |
|  | 100.0 | 28 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
5 | d1iona_ |
|  | 100.0 | 28 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
6 | d1cp2a_ |
|  | 100.0 | 14 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
7 | c3ea0B_ |
|  | 100.0 | 20 | PDB header:hydrolase Chain: B: PDB Molecule:atpase, para family; PDBTitle: crystal structure of para family atpase from chlorobium tepidum tls
8 | c2ozeA_ |
|  | 100.0 | 17 | PDB header:dna binding protein Chain: A: PDB Molecule:orf delta'; PDBTitle: the crystal structure of delta protein of psm19035 from2 streptoccocus pyogenes
9 | d1hyqa_ |
|  | 100.0 | 30 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
10 | c1hyqA_ |
|  | 100.0 | 30 | PDB header:cell cycle Chain: A: PDB Molecule:cell division inhibitor (mind-1); PDBTitle: mind bacterial cell division regulator from a. fulgidus
11 | c3kjgB_ |
|  | 100.0 | 21 | PDB header:hydrolase, metal binding protein Chain: B: PDB Molecule:co dehydrogenase/acetyl-coa synthase complex, accessory PDBTitle: adp-bound state of cooc1
12 | c3ez6B_ |
|  | 100.0 | 17 | PDB header:dna binding protein Chain: B: PDB Molecule:plasmid partition protein a; PDBTitle: structure of para-adp complex:tetragonal form
13 | c2bekB_ |
|  | 100.0 | 18 | PDB header:chromosome segregation Chain: B: PDB Molecule:segregation protein; PDBTitle: structure of the bacterial chromosome segregation protein2 soj
14 | c2ph1A_ |
|  | 100.0 | 15 | PDB header:ligand binding protein Chain: A: PDB Molecule:nucleotide-binding protein; PDBTitle: crystal structure of nucleotide-binding protein af2382 from2 archaeoglobus fulgidus, northeast structural genomics target gr165
15 | c2xj9B_ |
|  | 100.0 | 15 | PDB header:replication Chain: B: PDB Molecule:mipz; PDBTitle: dimer structure of the bacterial cell division regulator mipz
16 | c3fkqA_ |
|  | 100.0 | 18 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ntrc-like two-domain protein; PDBTitle: crystal structure of ntrc-like two-domain protein (rer070207001320)2 from eubacterium rectale at 2.10 a resolution
17 | c3ezfA_ |
|  | 100.0 | 16 | PDB header:biosynthetic protein Chain: A: PDB Molecule:para; PDBTitle: partition protein
18 | c3k9gA_ |
|  | 100.0 | 19 | PDB header:biosynthetic protein Chain: A: PDB Molecule:pf-32 protein; PDBTitle: crystal structure of a plasmid partition protein from borrelia2 burgdorferi at 2.25a resolution, iodide soak
19 | c3pg5A_ |
|  | 100.0 | 18 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of protein dip2308 from corynebacterium diphtheriae,2 northeast structural genomics consortium target cdr78
20 | c3cwqB_ |
|  | 100.0 | 26 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:para family chromosome partitioning protein; PDBTitle: crystal structure of chromosome partitioning protein (para) in complex2 with adp from synechocystis sp. northeast structural genomics3 consortium target sgr89
21 | c3zq6D_ |
| not modelled | 99.9 | 22 | PDB header:hydrolase Chain: D: PDB Molecule:putative arsenical pump-driving atpase; PDBTitle: adp-alf4 complex of m. therm. trc40
22 | c3cioA_ |
| not modelled | 99.9 | 13 | PDB header:signaling protein, transferase Chain: A: PDB Molecule:tyrosine-protein kinase etk; PDBTitle: the kinase domain of escherichia coli tyrosine kinase etk
23 | c2wooC_ |
| not modelled | 99.9 | 21 | PDB header:hydrolase Chain: C: PDB Molecule:atpase get3; PDBTitle: nucleotide-free form of s. pombe get3
24 | c3la6P_ |
| not modelled | 99.9 | 13 | PDB header:transferase Chain: P: PDB Molecule:tyrosine-protein kinase wzc; PDBTitle: octameric kinase domain of the e. coli tyrosine kinase wzc with bound2 adp
25 | d1byia_ |
| not modelled | 99.9 | 13 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
26 | c2wojD_ |
| not modelled | 99.9 | 19 | PDB header:hydrolase Chain: D: PDB Molecule:atpase get3; PDBTitle: adp-alf4 complex of s. cerevisiae get3
27 | c2vedA_ |
| not modelled | 99.9 | 18 | PDB header:transferase Chain: A: PDB Molecule:membrane protein capa1, protein tyrosine kinase; PDBTitle: crystal structure of the chimerical mutant capabk55m2 protein
28 | c3ug7D_ |
| not modelled | 99.9 | 25 | PDB header:hydrolase Chain: D: PDB Molecule:arsenical pump-driving atpase; PDBTitle: crystal structure of get3 from methanocaldococcus jannaschii
29 | c3of5A_ |
| not modelled | 99.9 | 11 | PDB header:ligase Chain: A: PDB Molecule:dethiobiotin synthetase; PDBTitle: crystal structure of a dethiobiotin synthetase from francisella2 tularensis subsp. tularensis schu s4
30 | c3ibgF_ |
| not modelled | 99.9 | 24 | PDB header:hydrolase Chain: F: PDB Molecule:atpase, subunit of the get complex; PDBTitle: crystal structure of aspergillus fumigatus get3 with bound2 adp
31 | d1ihua1 |
| not modelled | 99.9 | 20 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
32 | d1ihua2 |
| not modelled | 99.9 | 17 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
33 | c2qmoA_ |
| not modelled | 99.9 | 10 | PDB header:ligase Chain: A: PDB Molecule:dethiobiotin synthetase; PDBTitle: crystal structure of dethiobiotin synthetase (biod) from helicobacter2 pylori
34 | c3io3A_ |
| not modelled | 99.9 | 21 | PDB header:chaperone Chain: A: PDB Molecule:deha2d07832p; PDBTitle: get3 with adp from d. hansenii in closed form
35 | c1ii0A_ |
| not modelled | 99.9 | 21 | PDB header:hydrolase Chain: A: PDB Molecule:arsenical pump-driving atpase; PDBTitle: crystal structure of the escherichia coli arsenite-translocating2 atpase
36 | c3igfB_ |
| not modelled | 99.9 | 17 | PDB header:atp binding protein Chain: B: PDB Molecule:all4481 protein; PDBTitle: crystal structure of the all4481 protein from nostoc sp. pcc 7120,2 northeast structural genomics consortium target nsr300
37 | c3fmfA_ |
| not modelled | 99.8 | 18 | PDB header:ligase Chain: A: PDB Molecule:dethiobiotin synthetase; PDBTitle: crystal structure of mycobacterium tuberculosis dethiobiotin2 synthetase complexed with 7,8 diaminopelargonic acid carbamate
38 | c2qy9A_ |
| not modelled | 99.4 | 16 | PDB header:protein transport Chain: A: PDB Molecule:cell division protein ftsy; PDBTitle: structure of the ng+1 construct of the e. coli srp receptor2 ftsy
39 | c1zu4A_ |
| not modelled | 99.3 | 17 | PDB header:protein transport Chain: A: PDB Molecule:ftsy; PDBTitle: crystal structure of ftsy from mycoplasma mycoides- space2 group p21212
40 | c1vmaA_ |
| not modelled | 99.3 | 16 | PDB header:protein transport Chain: A: PDB Molecule:cell division protein ftsy; PDBTitle: crystal structure of cell division protein ftsy (tm0570) from2 thermotoga maritima at 1.60 a resolution
41 | c2cnwF_ |
| not modelled | 99.3 | 16 | PDB header:signal recognition Chain: F: PDB Molecule:cell division protein ftsy; PDBTitle: gdpalf4 complex of the srp gtpases ffh and ftsy
42 | c3dm5A_ |
| not modelled | 99.3 | 16 | PDB header:rna binding protein, transport protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus.
43 | c2og2A_ |
| not modelled | 99.3 | 18 | PDB header:protein transport Chain: A: PDB Molecule:putative signal recognition particle receptor; PDBTitle: crystal structure of chloroplast ftsy from arabidopsis2 thaliana
44 | c2j7pA_ |
| not modelled | 99.2 | 14 | PDB header:signal recognition Chain: A: PDB Molecule:signal recognition particle protein; PDBTitle: gmppnp-stabilized ng domain complex of the srp gtpases ffh2 and ftsy
45 | c3b9qA_ |
| not modelled | 99.2 | 20 | PDB header:protein transport Chain: A: PDB Molecule:chloroplast srp receptor homolog, alpha subunit PDBTitle: the crystal structure of cpftsy from arabidopsis thaliana
46 | c2j37W_ |
| not modelled | 99.2 | 15 | PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs
47 | c2yhsA_ |
| not modelled | 99.1 | 15 | PDB header:cell cycle Chain: A: PDB Molecule:cell division protein ftsy; PDBTitle: structure of the e. coli srp receptor ftsy
48 | c2iy3A_ |
| not modelled | 99.1 | 17 | PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome
49 | c3dmdA_ |
| not modelled | 99.0 | 16 | PDB header:transport protein Chain: A: PDB Molecule:signal recognition particle receptor; PDBTitle: structures and conformations in solution of the signal recognition2 particle receptor from the archaeon pyrococcus furiosus
50 | c2v3cC_ |
| not modelled | 99.0 | 16 | PDB header:signaling protein Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii
51 | c1qzwC_ |
| not modelled | 99.0 | 18 | PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication
52 | c2j289_ |
| not modelled | 98.8 | 15 | PDB header:ribosome Chain: 9: PDB Molecule:signal recognition particle 54; PDBTitle: model of e. coli srp bound to 70s rncs
53 | d1qzxa3 |
| not modelled | 98.4 | 24 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
54 | c2px0D_ |
| not modelled | 98.3 | 25 | PDB header:biosynthetic protein Chain: D: PDB Molecule:flagellar biosynthesis protein flhf; PDBTitle: crystal structure of flhf complexed with gmppnp/mg(2+)
55 | d1vmaa2 |
| not modelled | 98.1 | 29 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
56 | d2qm8a1 |
| not modelled | 98.0 | 18 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
57 | d1okkd2 |
| not modelled | 97.9 | 29 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
58 | d2qy9a2 |
| not modelled | 97.9 | 27 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
59 | c2f1rA_ |
| not modelled | 97.8 | 10 | PDB header:biosynthetic protein Chain: A: PDB Molecule:molybdopterin-guanine dinucleotide biosynthesis PDBTitle: crystal structure of molybdopterin-guanine biosynthesis2 protein b (mobb)
60 | c2npiB_ |
| not modelled | 97.8 | 18 | PDB header:transcription Chain: B: PDB Molecule:protein clp1; PDBTitle: clp1-atp-pcf11 complex
61 | c1j8yF_ |
| not modelled | 97.8 | 15 | PDB header:signaling protein Chain: F: PDB Molecule:signal recognition 54 kda protein; PDBTitle: signal recognition particle conserved gtpase domain from a.2 ambivalens t112a mutant
62 | c2recB_ |
| not modelled | 97.8 | 28 | PDB header:helicase PDB COMPND:
63 | d1j8yf2 |
| not modelled | 97.7 | 18 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
64 | c1xp8A_ |
| not modelled | 97.7 | 27 | PDB header:dna binding protein Chain: A: PDB Molecule:reca protein; PDBTitle: "deinococcus radiodurans reca in complex with atp-gamma-s"
65 | d1xjca_ |
| not modelled | 97.6 | 11 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
66 | d1ls1a2 |
| not modelled | 97.6 | 23 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
67 | c3tr5C_ |
| not modelled | 97.5 | 17 | PDB header:translation Chain: C: PDB Molecule:peptide chain release factor 3; PDBTitle: structure of a peptide chain release factor 3 (prfc) from coxiella2 burnetii
68 | c2h5eB_ |
| not modelled | 97.4 | 18 | PDB header:translation Chain: B: PDB Molecule:peptide chain release factor rf-3; PDBTitle: crystal structure of e.coli polypeptide release factor rf3
69 | c3bgwD_ |
| not modelled | 97.3 | 13 | PDB header:replication Chain: D: PDB Molecule:dnab-like replicative helicase; PDBTitle: the structure of a dnab-like replicative helicase and its interactions2 with primase
70 | d1nija1 |
| not modelled | 97.3 | 23 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
71 | c1xnjB_ |
| not modelled | 97.3 | 28 | PDB header:transferase Chain: B: PDB Molecule:bifunctional 3'-phosphoadenosine 5'-phosphosulfate PDBTitle: aps complex of human paps synthetase 1
72 | c3hr8A_ |
| not modelled | 97.2 | 24 | PDB header:recombination Chain: A: PDB Molecule:protein reca; PDBTitle: crystal structure of thermotoga maritima reca
73 | d1u94a1 |
| not modelled | 97.2 | 31 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain)
74 | d1np6a_ |
| not modelled | 97.2 | 21 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
75 | d1mo6a1 |
| not modelled | 97.2 | 26 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain)
76 | c2zroA_ |
| not modelled | 97.2 | 24 | PDB header:hydrolase Chain: A: PDB Molecule:protein reca; PDBTitle: msreca adp form iv
77 | c2q6tB_ |
| not modelled | 97.1 | 18 | PDB header:hydrolase Chain: B: PDB Molecule:dnab replication fork helicase; PDBTitle: crystal structure of the thermus aquaticus dnab monomer
78 | d1ubea1 |
| not modelled | 97.1 | 26 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain)
79 | c3cm0A_ |
| not modelled | 97.1 | 27 | PDB header:transferase Chain: A: PDB Molecule:adenylate kinase; PDBTitle: crystal structure of adenylate kinase from thermus2 thermophilus hb8
80 | c2wwwB_ |
| not modelled | 97.0 | 20 | PDB header:transport protein Chain: B: PDB Molecule:methylmalonic aciduria type a protein, PDBTitle: crystal structure of methylmalonic acidemia type a protein
81 | d1xp8a1 |
| not modelled | 97.0 | 31 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain)
82 | c2w0mA_ |
| not modelled | 97.0 | 24 | PDB header:unknown function Chain: A: PDB Molecule:sso2452; PDBTitle: crystal structure of sso2452 from sulfolobus solfataricus2 p2
83 | d1rz3a_ |
| not modelled | 97.0 | 25 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Phosphoribulokinase/pantothenate kinase
84 | c3bh0A_ |
| not modelled | 96.9 | 16 | PDB header:replication Chain: A: PDB Molecule:dnab-like replicative helicase; PDBTitle: atpase domain of g40p
85 | c3nxsA_ |
| not modelled | 96.9 | 22 | PDB header:transport protein Chain: A: PDB Molecule:lao/ao transport system atpase; PDBTitle: crystal structure of lao/ao transport system from mycobacterium2 smegmatis bound to gdp
86 | d1yrba1 |
| not modelled | 96.9 | 18 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
87 | c2vyeA_ |
| not modelled | 96.8 | 18 | PDB header:hydrolase Chain: A: PDB Molecule:replicative dna helicase; PDBTitle: crystal structure of the dnac-ssdna complex
88 | d1tf7a2 |
| not modelled | 96.8 | 21 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain)
89 | d1x6va3 |
| not modelled | 96.7 | 34 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Adenosine-5'phosphosulfate kinase (APS kinase)
90 | c3tqcB_ |
| not modelled | 96.7 | 33 | PDB header:transferase Chain: B: PDB Molecule:pantothenate kinase; PDBTitle: structure of the pantothenate kinase (coaa) from coxiella burnetii
91 | c3cmvG_ |
| not modelled | 96.7 | 29 | PDB header:recombination Chain: G: PDB Molecule:protein reca; PDBTitle: mechanism of homologous recombination from the reca-2 ssdna/dsdna structures
92 | c2gksB_ |
| not modelled | 96.7 | 32 | PDB header:transferase Chain: B: PDB Molecule:bifunctional sat/aps kinase; PDBTitle: crystal structure of the bi-functional atp sulfurylase-aps kinase from2 aquifex aeolicus, a chemolithotrophic thermophile
93 | c2ztsB_ |
| not modelled | 96.7 | 29 | PDB header:atp-binding protein Chain: B: PDB Molecule:putative uncharacterized protein ph0186; PDBTitle: crystal structure of kaic-like protein ph0186 from2 hyperthermophilic archaea pyrococcus horikoshii ot3
94 | d1odfa_ |
| not modelled | 96.7 | 39 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Phosphoribulokinase/pantothenate kinase
95 | c2dr3A_ |
| not modelled | 96.6 | 15 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0273 protein ph0284; PDBTitle: crystal structure of reca superfamily atpase ph0284 from pyrococcus2 horikoshii ot3
96 | d1sq5a_ |
| not modelled | 96.6 | 28 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Phosphoribulokinase/pantothenate kinase
97 | c3cr8C_ |
| not modelled | 96.6 | 32 | PDB header:transferase Chain: C: PDB Molecule:sulfate adenylyltranferase, adenylylsulfate PDBTitle: hexameric aps kinase from thiobacillus denitrificans
98 | d1ki9a_ |
| not modelled | 96.6 | 31 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
99 | d2p67a1 |
| not modelled | 96.6 | 22 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
100 | c2yvuA_ |
| not modelled | 96.6 | 35 | PDB header:transferase Chain: A: PDB Molecule:probable adenylyl-sulfate kinase; PDBTitle: crystal structure of ape1195
101 | d1jjva_ |
| not modelled | 96.6 | 43 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
102 | c1u9iA_ |
| not modelled | 96.6 | 17 | PDB header:circadian clock protein Chain: A: PDB Molecule:kaic; PDBTitle: crystal structure of circadian clock protein kaic with phosphorylation2 sites
103 | d1nlfa_ |
| not modelled | 96.6 | 17 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain)
104 | c1znyA_ |
| not modelled | 96.6 | 35 | PDB header:transferase Chain: A: PDB Molecule:guanylate kinase; PDBTitle: crystal structure of mycobacterium tuberculosis guanylate kinase in2 complex with gdp
105 | c2gesA_ |
| not modelled | 96.5 | 31 | PDB header:transferase Chain: A: PDB Molecule:pantothenate kinase; PDBTitle: pantothenate kinase from mycobacterium tuberculosis (mtpank) in2 complex with a coenzyme a derivative, form-i (rt)
106 | d1tf7a1 |
| not modelled | 96.5 | 29 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain)
107 | c3akcA_ |
| not modelled | 96.4 | 27 | PDB header:transferase Chain: A: PDB Molecule:cytidylate kinase; PDBTitle: crystal structure of cmp kinase in complex with cdp and adp from2 thermus thermophilus hb8
108 | d1nn5a_ |
| not modelled | 96.4 | 25 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
109 | c3lv8A_ |
| not modelled | 96.4 | 29 | PDB header:transferase Chain: A: PDB Molecule:thymidylate kinase; PDBTitle: 1.8 angstrom resolution crystal structure of a thymidylate kinase2 (tmk) from vibrio cholerae o1 biovar eltor str. n16961 in complex3 with tmp, thymidine-5'-diphosphate and adp
110 | d4tmka_ |
| not modelled | 96.4 | 31 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
111 | c2wwiC_ |
| not modelled | 96.4 | 21 | PDB header:transferase Chain: C: PDB Molecule:thymidilate kinase, putative; PDBTitle: plasmodium falciparum thymidylate kinase in complex with2 aztmp and adp
112 | c3c8uA_ |
| not modelled | 96.3 | 35 | PDB header:transferase Chain: A: PDB Molecule:fructokinase; PDBTitle: crystal structure of putative fructose transport system kinase2 (yp_612366.1) from silicibacter sp. tm1040 at 1.95 a resolution
113 | c1ly1A_ |
| not modelled | 96.2 | 34 | PDB header:transferase Chain: A: PDB Molecule:polynucleotide kinase; PDBTitle: structure and mechanism of t4 polynucleotide kinase
114 | d1ly1a_ |
| not modelled | 96.2 | 34 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
115 | d1znwa1 |
| not modelled | 96.2 | 35 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
116 | d1k6ma1 |
| not modelled | 96.2 | 26 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
117 | d1nksa_ |
| not modelled | 96.2 | 37 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
118 | c3asyB_ |
| not modelled | 96.2 | 33 | PDB header:transferase Chain: B: PDB Molecule:uridine kinase; PDBTitle: ligand-free structure of uridine kinase from thermus thermophilus hb8
119 | d1eg7a_ |
| not modelled | 96.2 | 33 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
120 | c1fnnB_ |
| not modelled | 96.2 | 21 | PDB header:cell cycle Chain: B: PDB Molecule:cell division control protein 6; PDBTitle: crystal structure of cdc6p from pyrobaculum aerophilum

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0